Citrus Sinensis ID: 006111

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410-------420-------430-------440-------450-------460-------470-------480-------490-------500-------510-------520-------530-------540-------550-------560-------570-------580-------590-------600-------610-------620-------630-------640-------650-------660
Protein Sequence
MKIFAAQVEEGKEGKDGKPSVGPVYRNLLASNGFPSVDSDLNTAWDIFSMSVQKYPGNRMLGWRPFVDGKFGPYVWKTYKEVYEEVLQIVSALRASGAEPGCRVGIYGANCPQWVEAMEACNALSLICVPLYDTLGPGAVNFILDHAEIDFVFVQDKKVKELLSPDCRSAQRLRVMVCFTSLTAEQKEMAVQTGIKPYSWDEFLHLGKVNEMEILPPQPFNICTIMYTSGTSGDPKGVVLTHETIATFVSGVDLFLDQFEDKMTVDDVYLSFLPLAHILDRVIEEYFFRRGASVGYYHGDLNALRDDLMELKPTLLAGVPRVFEKIHEGIKKALEELRPLRRRIFDALYKYKLAWMNMGYKQREASPLADLLAFRKVKARLGGRLRLVISGGAPLSTEVEEFLRVTCCAFLVQGYGLTETCGPTTVCFPDEMCMVGTAGPVSVYSELRLEEVPEMGYSPLDDPPCGEVCVRGKTLFSGYYKNPDLTRESIIDGWFHTGDIGQILPNGVVKIIDRKKNLIKISQGEYVALEYLENVYCVAPIIEDIWVYGDSLKSMLVAVVVPCEEDTKKWAYSNGHAGSFLELCSLVQLQNYILSELKNAAERNKLRGFEHIKGVILDPRPFDMERDLVTATLKKKRNKLLIYYQVEIDQLYEKLAPGRR
Secondary Structure (PSIPRED)
ccEEEEEccccccccccccccccccccccccccccccccccccHHHHHHHHHHHccccccEEEEEcccccccccEEEEHHHHHHHHHHHHHHHHHcccccccEEEEEccccHHHHHHHHHHHHccccEEEccccccHHHHHHHHHHccccEEEEccHHHHHHHcccccccccEEEEEEcccccHHHHHHHHHcccEEEEHHHHHHHcccccccccccccccEEEEEEcccccccccHHHHcHHHHHHHHHHHHHcccccccccccccEEEEEcHHHHHHHHHHHHHHHHHccEEEEccccHHHHHHHHHHHcccEEcccHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHcccccccccHHHHHHHHHHHHHHccccEEEEEEccccccHHHHHHHHHHHccccEEEcccccccccccccccccccccccccccccccEEEEEEcccccccccccccccEEEEccccccHHcccccccccccccccccccccEEEEcccccEEEEcccccHHHcccccEEccHHHHHHHHccccccEEEEEEEccccEEEEEEEccHHHHHHHHHHccccccHHHHHccHHHHHHHHHHHHHHHHHcccccccEEEEEEEcccccccccccccccccccHHHHHHHHHHHHHHHHHHHccccc
Secondary Structure Prediction (SSPRO)
ccEEEEEEcccccccccccccccEEcccccccccccccccHHHHHHHHHHHHHHccccccccEEEccccccccEEEEEHHHHHHHHHHHHHHHHHcccccccEEEEEEcccHHHHHHHHHHHHccEEEEEccccccHHHHHHHEccccEEEEEEccHHHHHHHHHHHcccccEEEEEEEccccHHHHHHHHHcccEEEEHHHHHHHcccccccccccccccEEEEEEEccccccccEEEEccHHHHHHHHHHHHHHHHccccccHccEEEEHHHHHHHHHHHHHHHHHHcccEEEEccccHHHHHHHHHHccccccHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHcccccccccHHHHHHHHHHHHHHcccEEEEEEEccccccHHHHHHHHHHHccEEEEccccccccccEEEEccccccccccccccccccEEEEEEcccccccccccccccEEEEEcccEEEcccccHHHHHHHHHcccccccccccEccccEEEEEEccccEEEEccccEEccHHHHHEEEccccccEEEEEccccccEEEEEEcccHHHHHHHHHHccccccHHHHHccHHHHHHHHHHHHHHHHHccccccHEEEEEEEcccccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHcccc
Coil and Loop (DISEMBL)
MKIFAAQVeegkegkdgkpsvgpvyrnllasngfpsvdsdlntaWDIFSMSVQkypgnrmlgwrpfvdgkfgpyVWKTYKEVYEEVLQIVSALRAsgaepgcrvgiygancPQWVEAMEACNALSLICvplydtlgpgavnfILDHAEIDFVFVQDKKVkellspdcrsaqRLRVMVCFTSLTAEQKEMAVqtgikpyswdeflhlgkvnemeilppqpfnictimytsgtsgdpkgvvLTHETIATFVSGVDLFLDQfedkmtvddvylSFLPLAHILDRVIEEYFFRRGasvgyyhgdLNALRDDLMELKptllagvpRVFEKIHEGIKKALEELRPLRRRIFDALYKYKLAWMNMgykqreasplADLLAFRKVKARLGGRLRlvisggaplstEVEEFLRVTCCAFLVqgygltetcgpttvcfpdemcmvgtagpvsvyselrleevpemgysplddppcgevcvrgktlfsgyyknpdltresiidgwfhtgdigqilpngVVKIIDRKKNLIKISQGEYVALEYLENVYCVAPIIEDIWVYGDSLKSMLVAVVVPceedtkkwaysnghagSFLELCSLVQLQNYILSELKNAAERNKlrgfehikgvildprpfdmERDLVTATLKKKRNKLLIYYQVEIDQLYEKLAPGRR
Flexible Loop (DISEMBL)
MKIFAAqveegkegkdgkpsvGPVYRNLLASNGFPSVDSDLNTAWDIFSMSVQKYPGNRMLGWRPFVDGKFGPYVWKTYKEVYEEVLQIVSALRASGAEPGCRVGIYGANCPQWVEAMEACNALSLICVPLYDTLGPGAVNFILDHAEIDFVFVQDKKVKEllspdcrsaqrlRVMVCFTSLTAEQKEMAVQTGIKPYSWDEFLHLGKVNEMEILPPQPFNICTIMYTSGTSGDPKGVVLTHETIATFVSGVDLFLDQFEDKMTVDDVYLSFLPLAHILDRVIEEYFFRRGASVGYYHGDLNALRDDLMELKPTLLAGVPRVFEKIHEGIKKaleelrplrRRIFDALYKYKLAWMNMGYKQREASPLADLLAFRKVKARLGGRLRLVISGGAPLSTEVEEFLRVTCCAFLVQGYGLTETCGPTTVCFPDEMCMVGTAGPVSVYSELRLEEVPEmgysplddppcgEVCVRGKTLFSGYYKNPDLTRESIIDGWFHTGDIGQILPNGVVKIIDRKKNLIKISQGEYVALEYLENVYCVAPIIEDIWVYGDSLKSMLVAVVVPCEEDTKKWAYSNGHAGSFLELCSLVQLQNYILSELKNAAERnklrgfehikgvildprpfdMERDLVTATLKKKRNKLLIYYQVEIdqlyeklapgrr
Low Complexity Region (SEG)
MKIFAAQVEEGKEGKDGKPSVGPVYRNLLASNGFPSVDSDLNTAWDIFSMSVQKYPGNRMLGWRPFVDGKFGPYVWKTYKEVYEEVLQIVSALRASGAEPGCRVGIYGANCPQWVEAMEACNALSLICVPLYDTLGPGAVNFILDHAEIDFVFVQDKKVKELLSPDCRSAQRLRVMVCFTSLTAEQKEMAVQTGIKPYSWDEFLHLGKVNEMEILPPQPFNICTIMYTSGTSGDPKGVVLTHETIATFVSGVDLFLDQFEDKMTVDDVYLSFLPLAHILDRVIEEYFFRRGASVGYYHGDLNALRDDLMELKPTLLAGVPRVFEKIHEGIKKALEELRPLRRRIFDALYKYKLAWMNMGYKQREASPLADLLAFRKVKARLGGRLRLVISGGAPLSTEVEEFLRVTCCAFLVQGYGLTETCGPTTVCFPDEMCMVGTAGPVSVYSELRLEEVPEMGYSPLDDPPCGEVCVRGKTLFSGYYKNPDLTRESIIDGWFHTGDIGQILPNGVVKIIDRKKNLIKISQGEYVALEYLENVYCVAPIIEDIWVYGDSLKSMLVAVVVPCEEDTKKWAYSNGHAGSFLELCSLVQLQNYILSELKNAAERNKLRGFEHIKGVILDPRPFDMERDLVTATLKKKRNKLLIYYQVEIDQLYEKLAPGRR
Disordered region (IsUnstruct)
***********************VYRNLLASNGFPSVDSDLNTAWDIFSMSVQKYPGNRMLGWRPFVDGKFGPYVWKTYKEVYEEVLQIVSALRASGAEPGCRVGIYGANCPQWVEAMEACNALSLICVPLYDTLGPGAVNFILDHAEIDFVFVQDKKVKELLSPDCRSAQRLRVMVCFTSLTAEQKEMAVQTGIKPYSWDEFLHLGKVNEMEILPPQPFNICTIMYTSGTSGDPKGVVLTHETIATFVSGVDLFLDQFEDKMTVDDVYLSFLPLAHILDRVIEEYFFRRGASVGYYHGDLNALRDDLMELKPTLLAGVPRVFEKIHEGIKKALEELRPLRRRIFDALYKYKLAWMNMGYKQREASPLADLLAFRKVKARLGGRLRLVISGGAPLSTEVEEFLRVTCCAFLVQGYGLTETCGPTTVCFPDEMCMVGTAGPVSVYSELRLEEVPEMGYSPLDDPPCGEVCVRGKTLFSGYYKNPDLTRESIIDGWFHTGDIGQILPNGVVKIIDRKKNLIKISQGEYVALEYLENVYCVAPIIEDIWVYGDSLKSMLVAVVVPCEEDTKKWAYSNGHAGSFLELCSLVQLQNYILSELKNAAERNKLRGFEHIKGVILDPRPFDMERDLVTATLKKKRNKLLIYYQVEIDQLYE*******
Disordered Region (DISOPRED)
*KIFAAQ****************VYRNLLASNGFPSVDSDLNTAWDIFSMSVQKYPGNRMLGWRPFVDGKFGPYVWKTYKEVYEEVLQIVSALRASGAEPGCRVGIYGANCPQWVEAMEACNALSLICVPLYDTLGPGAVNFILDHAEIDFVFVQDKKVKELLSPDCRSAQRLRVMVCFTSLTAEQKEMAVQTGIKPYSWDEFLHL**********PQPFNICTIMYTSGTSGDPKGVVLTHETIATFVSGVDLFLDQFEDKMTVDDVYLSFLPLAHILDRVIEEYFFRRGASVGYYHGDLNALRDDLMELKPTLLAGVPRVFEKIHEGIKKALEELRPLRRRIFDALYKYKLAWMNMGYKQREASPLADLLAFRKVKARLGGRLRLVISGGAPLSTEVEEFLRVTCCAFLVQGYGLTETCGPTTVCFPDEMCMVGTAGPVSVYSELRLEEVPEMGYSPLDDPPCGEVCVRGKTLFSGYYKNPDLTRESIIDGWFHTGDIGQILPNGVVKIIDRKKNLIKISQGEYVALEYLENVYCVAPIIEDIWVYGDSLKSMLVAVVVPCEEDTKKWAYSNGHAGSFLELCSLVQLQNYILSELKNAAERNKLRGFEHIKGVILDPRPFDMERDLVTATLKKKRNKLLIYYQVEIDQL**K******
Disordered Region (DISEMBL)
*****************KPSVGPVYRNLLASNGFPSVDSDLNTAWDIFSMSVQKYPGNRMLGWRPFVDGKFGPYVWKTYKEVYEEVLQIVSALRASGAEPGCRVGIYGANCPQWVEAMEACNALSLICVPLYDTLGPGAVNFILDHAEIDFVFVQDKKVKELLSPDCRSAQRLRVMVCFTSLTAEQKEMAVQTGIKPYSWDEFLHLGKVNEMEILPPQPFNICTIMYTSGTSGDPKGVVLTHETIATFVSGVDLFLDQFEDKMTVDDVYLSFLPLAHILDRVIEEYFFRRGASVGYYHGDLNALRDDLMELKPTLLAGVPRVFEKIHEGIKKALEELRPLRRRIFDALYKYKLAWMNMGYKQREASPLADLLAFRKVKARLGGRLRLVISGGAPLSTEVEEFLRVTCCAFLVQGYGLTETCGPTTVCFPDEMCMVGTAGPVSVYSELRLEEVPEMGYSPLDDPPCGEVCVRGKTLFSGYYKNPDLTRESIIDGWFHTGDIGQILPNGVVKIIDRKKNLIKISQGEYVALEYLENVYCVAPIIEDIWVYGDSLKSMLVAVVVPCEEDTKKWAYSNGHAGSFLELCSLVQLQNYILSELKNAAERNKLRGFEHIKGVILDPRPFDMERDLVTATLKKKRNKLLIYYQVEIDQLYEKLAPGRR
Disordered Region (DISPRO)
*KIFAAQVEEGKEGKDGKPSVGPVYRNLLASNGFPSVDSDLNTAWDIFSMSVQKYPGNRMLGWRPFVDGKFGPYVWKTYKEVYEEVLQIVSALRASGAEPGCRVGIYGANCPQWVEAMEACNALSLICVPLYDTLGPGAVNFILDHAEIDFVFVQDKKVKELLSPDCRSAQRLRVMVCFTSLTAEQKEMAVQTGIKPYSWDEFLHLGKVNEMEILPPQPFNICTIMYTSGTSGDPKGVVLTHETIATFVSGVDLFLDQFEDKMTVDDVYLSFLPLAHILDRVIEEYFFRRGASVGYYHGDLNALRDDLMELKPTLLAGVPRVFEKIHEGIKKALEELRPLRRRIFDALYKYKLAWMNMGYKQREASPLADLLAFRKVKARLGGRLRLVISGGAPLSTEVEEFLRVTCCAFLVQGYGLTETCGPTTVCFPDEMCMVGTAGPVSVYSELRLEEVPEMGYSPLDDPPCGEVCVRGKTLFSGYYKNPDLTRESIIDGWFHTGDIGQILPNGVVKIIDRKKNLIKISQGEYVALEYLENVYCVAPIIEDIWVYGDSLKSMLVAVVVPCEEDTKKWAYSNGHAGSFLELCSLVQLQNYILSELKNAAERNKLRGFEHIKGVILDPRPFDMERDLVTATLKKKRNKLLIYYQVEIDQLYEKLAP***
Transmembrane Helix (TMHMM)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooohhhhhhhhhhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (MEMSAT_SVM)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (Phobius)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MKIFAAQVEEGKEGKDGKPSVGPVYRNLLASNGFPSVDSDLNTAWDIFSMSVQKYPGNRMLGWRPFVDGKFGPYVWKTYKEVYEEVLQIVSALRASGAEPGCRVGIYGANCPQWVEAMEACNALSLICVPLYDTLGPGAVNFILDHAEIDFVFVQDKKVKELLSPDCRSAQRLRVMVCFTSLTAEQKEMAVQTGIKPYSWDEFLHLGKVNEMEILPPQPFNICTIMYTSGTSGDPKGVVLTHETIATFVSGVDLFLDQFEDKMTVDDVYLSFLPLAHILDRVIEEYFFRRGASVGYYHGDLNALRDDLMELKPTLLAGVPRVFEKIHEGIKKALEELRPLRRRIFDALYKYKLAWMNMGYKQREASPLADLLAFRKVKARLGGRLRLVISGGAPLSTEVEEFLRVTCCAFLVQGYGLTETCGPTTVCFPDEMCMVGTAGPVSVYSELRLEEVPEMGYSPLDDPPCGEVCVRGKTLFSGYYKNPDLTRESIIDGWFHTGDIGQILPNGVVKIIDRKKNLIKISQGEYVALEYLENVYCVAPIIEDIWVYGDSLKSMLVAVVVPCEEDTKKWAYSNGHAGSFLELCSLVQLQNYILSELKNAAERNKLRGFEHIKGVILDPRPFDMERDLVTATLKKKRNKLLIYYQVEIDQLYEKLAPGRR
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	660	2.2.26 [Sep-21-2011]
O22898	660	Long chain acyl-CoA synth	yes	no	0.993	0.993	0.693	0.0
Q9T0A0	666	Long chain acyl-CoA synth	no	no	0.990	0.981	0.509	0.0
Q9T009	666	Long chain acyl-CoA synth	no	no	0.996	0.987	0.503	0.0
Q9C7W4	665	Long chain acyl-CoA synth	no	no	0.986	0.978	0.506	0.0
Q9XIA9	665	Long chain acyl-CoA synth	no	no	0.980	0.972	0.471	1e-176
Q8LPS1	701	Long chain acyl-CoA synth	no	no	0.916	0.863	0.406	1e-117
Q8LKS5	700	Long chain acyl-CoA synth	no	no	0.915	0.862	0.390	1e-116
Q1ZXQ4	673	Fatty acyl-CoA synthetase	yes	no	0.971	0.952	0.350	1e-113
Q55DR6	667	Fatty acyl-CoA synthetase	no	no	0.913	0.904	0.373	1e-110
Q9ULC5	683	Long-chain-fatty-acid--Co	yes	no	0.913	0.882	0.358	1e-107

>sp|O22898|LACS1_ARATH Long chain acyl-CoA synthetase 1 OS=Arabidopsis thaliana GN=LACS1 PE=2 SV=1

 Score =  977 bits (2525), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 455/656 (69%), Positives = 549/656 (83%)

Query: 1   MKIFAAQVEEGKEGKDGKPSVGPVYRNLLASNGFPSVDSDLNTAWDIFSMSVQKYPGNRM 60
           MK FAA+VEEG +G DGKPSVGPVYRNLL+  GFP +DS++ TAWDIFS SV+K+P N M
Sbjct: 1   MKSFAAKVEEGVKGIDGKPSVGPVYRNLLSEKGFPPIDSEITTAWDIFSKSVEKFPDNNM 60

Query: 61  LGWRPFVDGKFGPYVWKTYKEVYEEVLQIVSALRASGAEPGCRVGIYGANCPQWVEAMEA 120
           LGWR  VD K GPY+WKTYKEVYEEVLQI SALRA+GAEPG RVGIYG NCPQW+ AMEA
Sbjct: 61  LGWRRIVDEKVGPYMWKTYKEVYEEVLQIGSALRAAGAEPGSRVGIYGVNCPQWIIAMEA 120

Query: 121 CNALSLICVPLYDTLGPGAVNFILDHAEIDFVFVQDKKVKELLSPDCRSAQRLRVMVCFT 180
           C A +LICVPLYDTLG GAV++I++HAEIDFVFVQD K+K LL PDC+ A+RL+ +V FT
Sbjct: 121 CAAHTLICVPLYDTLGSGAVDYIVEHAEIDFVFVQDTKIKGLLEPDCKCAKRLKAIVSFT 180

Query: 181 SLTAEQKEMAVQTGIKPYSWDEFLHLGKVNEMEILPPQPFNICTIMYTSGTSGDPKGVVL 240
           +++ E    A + G+K YSW +FLH+G+    +  PP+ FNICTIMYTSGTSGDPKGVVL
Sbjct: 181 NVSDELSHKASEIGVKTYSWIDFLHMGREKPEDTNPPKAFNICTIMYTSGTSGDPKGVVL 240

Query: 241 THETIATFVSGVDLFLDQFEDKMTVDDVYLSFLPLAHILDRVIEEYFFRRGASVGYYHGD 300
           TH+ +ATFV G+DL++DQFEDKMT DDVYLSFLPLAHILDR+ EEYFFR+GASVGYYHG+
Sbjct: 241 THQAVATFVVGMDLYMDQFEDKMTHDDVYLSFLPLAHILDRMNEEYFFRKGASVGYYHGN 300

Query: 301 LNALRDDLMELKPTLLAGVPRVFEKIHEGIKKALEELRPLRRRIFDALYKYKLAWMNMGY 360
           LN LRDD+ ELKPT LAGVPRVFE+IHEGI+KAL+EL P RR IF+ALYK+KLAW+N GY
Sbjct: 301 LNVLRDDIQELKPTYLAGVPRVFERIHEGIQKALQELNPRRRFIFNALYKHKLAWLNRGY 360

Query: 361 KQREASPLADLLAFRKVKARLGGRLRLVISGGAPLSTEVEEFLRVTCCAFLVQGYGLTET 420
              +ASP+AD +AFRK++ +LGGR+RL++SGGAPLS E+EEFLRVTCC F+VQGYGLTET
Sbjct: 361 SHSKASPMADFIAFRKIRDKLGGRIRLLVSGGAPLSPEIEEFLRVTCCCFVVQGYGLTET 420

Query: 421 CGPTTVCFPDEMCMVGTAGPVSVYSELRLEEVPEMGYSPLDDPPCGEVCVRGKTLFSGYY 480
            G T + FPDEMCM+GT G  +VY+E+RLEEV EMGY PL + P GE+C+RG+ +FSGYY
Sbjct: 421 LGGTALGFPDEMCMLGTVGIPAVYNEIRLEEVSEMGYDPLGENPAGEICIRGQCMFSGYY 480

Query: 481 KNPDLTRESIIDGWFHTGDIGQILPNGVVKIIDRKKNLIKISQGEYVALEYLENVYCVAP 540
           KNP+LT E + DGWFHTGDIG+ILPNGV+KIIDRKKNLIK+SQGEYVALE+LEN++    
Sbjct: 481 KNPELTEEVMKDGWFHTGDIGEILPNGVLKIIDRKKNLIKLSQGEYVALEHLENIFGQNS 540

Query: 541 IIEDIWVYGDSLKSMLVAVVVPCEEDTKKWAYSNGHAGSFLELCSLVQLQNYILSELKNA 600
           +++DIWVYGDS KSMLVAVVVP  E   +WA   G    F ELCS  +L+ +I+SELK+ 
Sbjct: 541 VVQDIWVYGDSFKSMLVAVVVPNPETVNRWAKDLGFTKPFEELCSFPELKEHIISELKST 600

Query: 601 AERNKLRGFEHIKGVILDPRPFDMERDLVTATLKKKRNKLLIYYQVEIDQLYEKLA 656
           AE+NKLR FE+IK V ++ +PFD+ERDLVTATLK +RN LL YYQV+ID++Y KLA
Sbjct: 601 AEKNKLRKFEYIKAVTVETKPFDVERDLVTATLKNRRNNLLKYYQVQIDEMYRKLA 656

Activation of long-chain fatty acids for both synthesis of cellular lipids, and degradation via beta-oxidation. Acts in both the wax and cutin pathways. Preferentially uses palmitate, palmitoleate, linoleate and eicosenoate. Seems to have a specific activity against very long-chain fatty acid (VLCFA) class with acids longer than 24 carbons (C(24)).
Arabidopsis thaliana (taxid: 3702)
EC: 6EC: .EC: 2EC: .EC: 1EC: .EC: 3

>sp|Q9T0A0|LACS4_ARATH Long chain acyl-CoA synthetase 4 OS=Arabidopsis thaliana GN=LACS4 PE=2 SV=1

 Score =  704 bits (1818), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 333/654 (50%), Positives = 459/654 (70%)

Query: 2   KIFAAQVEEGKEGKDGKPSVGPVYRNLLASNGFPSVDSDLNTAWDIFSMSVQKYPGNRML 61
           K +  QVEEGKEG DG+PSVGPVYR++ A +GFP     +++ WD+F MSV+KYP N ML
Sbjct: 5   KKYIFQVEEGKEGSDGRPSVGPVYRSIFAKDGFPDPIEGMDSCWDVFRMSVEKYPNNPML 64

Query: 62  GWRPFVDGKFGPYVWKTYKEVYEEVLQIVSALRASGAEPGCRVGIYGANCPQWVEAMEAC 121
           G R  VDGK G YVW+TY+EVY+ V+++ ++LR+ G +   + GIYGAN P+W+ +MEAC
Sbjct: 65  GRREIVDGKPGKYVWQTYQEVYDIVMKLGNSLRSVGVKDEAKCGIYGANSPEWIISMEAC 124

Query: 122 NALSLICVPLYDTLGPGAVNFILDHAEIDFVFVQDKKVKELLSPDCRSAQRLRVMVCFTS 181
           NA  L CVPLYDTLG  AV FI+ H+E+  VFV++KK+ EL      S + ++ +V F  
Sbjct: 125 NAHGLYCVPLYDTLGADAVEFIISHSEVSIVFVEEKKISELFKTCPNSTEYMKTVVSFGG 184

Query: 182 LTAEQKEMAVQTGIKPYSWDEFLHLGKVNEMEILPPQPFNICTIMYTSGTSGDPKGVVLT 241
           ++ EQKE A   G+  Y+WDEFL LG+  + ++   +  +ICTIMYTSGT+GDPKGV+++
Sbjct: 185 VSREQKEEAETFGLVIYAWDEFLKLGEGKQYDLPIKKKSDICTIMYTSGTTGDPKGVMIS 244

Query: 242 HETIATFVSGVDLFLDQFEDKMTVDDVYLSFLPLAHILDRVIEEYFFRRGASVGYYHGDL 301
           +E+I T ++GV   L    + +TV DVYLS+LPLAHI DRVIEE F + GA++G++ GD+
Sbjct: 245 NESIVTLIAGVIRLLKSANEALTVKDVYLSYLPLAHIFDRVIEECFIQHGAAIGFWRGDV 304

Query: 302 NALRDDLMELKPTLLAGVPRVFEKIHEGIKKALEELRPLRRRIFDALYKYKLAWMNMGYK 361
             L +DL ELKPT+   VPRV ++++ G++K L +   L++ IFD+ + YK  +M  G  
Sbjct: 305 KLLIEDLAELKPTIFCAVPRVLDRVYSGLQKKLSDGGFLKKFIFDSAFSYKFGYMKKGQS 364

Query: 362 QREASPLADLLAFRKVKARLGGRLRLVISGGAPLSTEVEEFLRVTCCAFLVQGYGLTETC 421
             EASPL D L F KVK  LGG +R+++SG APL++ VE FLRV  C  ++QGYGLTE+C
Sbjct: 365 HVEASPLFDKLVFSKVKQGLGGNVRIILSGAAPLASHVESFLRVVACCHVLQGYGLTESC 424

Query: 422 GPTTVCFPDEMCMVGTAGPVSVYSELRLEEVPEMGYSPLDDPPCGEVCVRGKTLFSGYYK 481
             T V  PDE+ M+GT GP     ++RLE VPEM Y  L     GE+C+RGKTLFSGYYK
Sbjct: 425 AGTFVSLPDELGMLGTVGPPVPNVDIRLESVPEMEYDALASTARGEICIRGKTLFSGYYK 484

Query: 482 NPDLTRESIIDGWFHTGDIGQILPNGVVKIIDRKKNLIKISQGEYVALEYLENVYCVAPI 541
             DLT+E +IDGW HTGD+G+  P+G +KIIDRKKN+ K+SQGEYVA+E +EN+Y     
Sbjct: 485 REDLTKEVLIDGWLHTGDVGEWQPDGSMKIIDRKKNIFKLSQGEYVAVENIENIYGEVQA 544

Query: 542 IEDIWVYGDSLKSMLVAVVVPCEEDTKKWAYSNGHAGSFLELCSLVQLQNYILSELKNAA 601
           ++ +WVYG+S +S L+A+  P +   ++WA  NG +G +  LC   + + +IL EL   A
Sbjct: 545 VDSVWVYGNSFESFLIAIANPNQHILERWAAENGVSGDYDALCQNEKAKEFILGELVKMA 604

Query: 602 ERNKLRGFEHIKGVILDPRPFDMERDLVTATLKKKRNKLLIYYQVEIDQLYEKL 655
           +  K++GFE IK + LDP PFDMERDL+T T KKKR +LL YYQ  ID++Y+ +
Sbjct: 605 KEKKMKGFEIIKAIHLDPVPFDMERDLLTPTFKKKRPQLLKYYQSVIDEMYKTI 658

Activation of long-chain fatty acids for both synthesis of cellular lipids, and degradation via beta-oxidation. Preferentially uses palmitate, palmitoleate, oleate and linoleate.

Arabidopsis thaliana (taxid: 3702)

EC: 6

EC: .

EC: 2

EC: .

EC: 1

EC: .

EC: 3

>sp|Q9T009|LACS5_ARATH Long chain acyl-CoA synthetase 5 OS=Arabidopsis thaliana GN=LACS5 PE=2 SV=1

 Score =  692 bits (1785), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 333/662 (50%), Positives = 447/662 (67%), Gaps = 4/662 (0%)

Query: 2   KIFAAQVEEGKEGKDGKPSVGPVYRNLLASNGFPSVDSDLNTAWDIFSMSVQKYPGNRML 61
           K F  +VE  KE  DG PSVGPVYR+  A NGFP+    + + WDIF  +V+KYP NRML
Sbjct: 5   KRFIFEVEAAKEATDGNPSVGPVYRSTFAQNGFPNPIDGIQSCWDIFRTAVEKYPNNRML 64

Query: 62  GWRPFVDGKFGPYVWKTYKEVYEEVLQIVSALRASGAEPGCRVGIYGANCPQWVEAMEAC 121
           G R   +GK G YVWKTYKEVY+ V+++ ++LR+ G + G + GIYG NC +W+ +MEAC
Sbjct: 65  GRREISNGKAGKYVWKTYKEVYDIVIKLGNSLRSCGIKEGEKCGIYGINCCEWIISMEAC 124

Query: 122 NALSLICVPLYDTLGPGAVNFILDHAEIDFVFVQDKKVKELLSPDCRSAQRLRVMVCFTS 181
           NA  L CVPLYDTLG GAV FI+ HAE+   FV++KK+ EL      S + ++ +V F  
Sbjct: 125 NAHGLYCVPLYDTLGAGAVEFIISHAEVSIAFVEEKKIPELFKTCPNSTKYMKTVVSFGG 184

Query: 182 LTAEQKEMAVQTGIKPYSWDEFLHLGKVNEMEILPPQPFNICTIMYTSGTSGDPKGVVLT 241
           +  EQKE A + G+  +SWDEFL LG+  + E+   +P +ICTIMYTSGT+GDPKGV+++
Sbjct: 185 VKPEQKEEAEKLGLVIHSWDEFLKLGEGKQYELPIKKPSDICTIMYTSGTTGDPKGVMIS 244

Query: 242 HETIATFVSGVDLFLDQFEDKMTVDDVYLSFLPLAHILDRVIEEYFFRRGASVGYYHGDL 301
           +E+I T  +GV  FL      ++  DVY+S+LPLAH+ DR IEE   + G S+G++ GD+
Sbjct: 245 NESIVTITTGVMHFLGNVNASLSEKDVYISYLPLAHVFDRAIEECIIQVGGSIGFWRGDV 304

Query: 302 NALRDDLMELKPTLLAGVPRVFEKIHEGIKKALEELRPLRRRIFDALYKYKLAWMNMGYK 361
             L +DL ELKP++   VPRV ++++ G+++ L      ++++FD  + YK   M  G  
Sbjct: 305 KLLIEDLGELKPSIFCAVPRVLDRVYTGLQQKLSGGGFFKKKVFDVAFSYKFGNMKKGQS 364

Query: 362 QREASPLADLLAFRKVKARLGGRLRLVISGGAPLSTEVEEFLRVTCCAFLVQGYGLTETC 421
              ASP  D L F KVK  LGG +R+++SG APL++ +E FLRV  C  ++QGYGLTE+C
Sbjct: 365 HVAASPFCDKLVFNKVKQGLGGNVRIILSGAAPLASHIESFLRVVACCNVLQGYGLTESC 424

Query: 422 GPTTVCFPDEMCMVGTAGPVSVYSELRLEEVPEMGYSPLDDPPCGEVCVRGKTLFSGYYK 481
             T   FPDE+ M+GT GP     ++RLE VPEM Y  L   P GE+C+RGKTLFSGYYK
Sbjct: 425 AGTFATFPDELDMLGTVGPPVPNVDIRLESVPEMNYDALGSTPRGEICIRGKTLFSGYYK 484

Query: 482 NPDLTRESIIDGWFHTGDIGQILPNGVVKIIDRKKNLIKISQGEYVALEYLENVYCVAPI 541
             DLT+E  IDGW HTGD+G+  PNG +KIIDRKKN+ K++QGEYVA+E LENVY    +
Sbjct: 485 REDLTKEVFIDGWLHTGDVGEWQPNGSMKIIDRKKNIFKLAQGEYVAVENLENVYSQVEV 544

Query: 542 IEDIWVYGDSLKSMLVAVVVPCEEDTKKWAYSNGHAGSFLELCSLVQLQNYILSELKNAA 601
           IE IWVYG+S +S LVA+  P ++  ++WA  NG  G F  +C   + + +IL EL   A
Sbjct: 545 IESIWVYGNSFESFLVAIANPAQQTLERWAVENGVNGDFNSICQNAKAKAFILGELVKTA 604

Query: 602 ERNKLRGFEHIKGVILDPRPFDMERDLVTATLKKKRNKLLIYYQVEIDQLY----EKLAP 657
           + NKL+GFE IK V L+P  FDMERDL+T T KKKR +LL YYQ  I ++Y    E LA 
Sbjct: 605 KENKLKGFEIIKDVHLEPVAFDMERDLLTPTYKKKRPQLLKYYQNVIHEMYKTTKESLAS 664

Query: 658 GR 659
           G+
Sbjct: 665 GQ 666

Activation of long-chain fatty acids for both synthesis of cellular lipids, and degradation via beta-oxidation. Preferentially uses palmitate, palmitoleate, oleate and linoleate.

Arabidopsis thaliana (taxid: 3702)

EC: 6

EC: .

EC: 2

EC: .

EC: 1

EC: .

EC: 3

>sp|Q9C7W4|LACS3_ARATH Long chain acyl-CoA synthetase 3 OS=Arabidopsis thaliana GN=LACS3 PE=2 SV=1

 Score =  682 bits (1760), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 330/652 (50%), Positives = 449/652 (68%), Gaps = 1/652 (0%)

Query: 4   FAAQVEEGKEGKDG-KPSVGPVYRNLLASNGFPSVDSDLNTAWDIFSMSVQKYPGNRMLG 62
           +  +VE+GK+G DG  PSVGPVYR++ A +GFP    DL +AWDIF +SV+K P N MLG
Sbjct: 6   YIVEVEKGKQGVDGGSPSVGPVYRSIYAKDGFPEPPDDLVSAWDIFRLSVEKSPNNPMLG 65

Query: 63  WRPFVDGKFGPYVWKTYKEVYEEVLQIVSALRASGAEPGCRVGIYGANCPQWVEAMEACN 122
            R  VDGK G YVW+TYKEV+  V+++ +++R  G   G + GIYGAN P+W+ +MEACN
Sbjct: 66  RREIVDGKAGKYVWQTYKEVHNVVIKLGNSIRTIGVGKGDKCGIYGANSPEWIISMEACN 125

Query: 123 ALSLICVPLYDTLGPGAVNFILDHAEIDFVFVQDKKVKELLSPDCRSAQRLRVMVCFTSL 182
           A  L CVPLYDTLG GA+ FI+ HAE+   F ++ K+ ELL    +S + L+ +V F  +
Sbjct: 126 AHGLYCVPLYDTLGAGAIEFIICHAEVSLAFAEENKISELLKTAPKSTKYLKYIVSFGEV 185

Query: 183 TAEQKEMAVQTGIKPYSWDEFLHLGKVNEMEILPPQPFNICTIMYTSGTSGDPKGVVLTH 242
           T  Q+  A +  +  YSWD+FL LG+    E+   +  ++CTIMYTSGT+GDPKGV+LT+
Sbjct: 186 TNNQRVEAERHRLTIYSWDQFLKLGEGKHYELPEKRRSDVCTIMYTSGTTGDPKGVLLTN 245

Query: 243 ETIATFVSGVDLFLDQFEDKMTVDDVYLSFLPLAHILDRVIEEYFFRRGASVGYYHGDLN 302
           E+I   + GV   L   ++++T  DVYLS+LPLAHI DRVIEE      AS+G++ GD+ 
Sbjct: 246 ESIIHLLEGVKKLLKTIDEELTSKDVYLSYLPLAHIFDRVIEELCIYEAASIGFWRGDVK 305

Query: 303 ALRDDLMELKPTLLAGVPRVFEKIHEGIKKALEELRPLRRRIFDALYKYKLAWMNMGYKQ 362
            L +D+  LKPT+   VPRV E+I+ G+++ L +   +++++F+  +KYK   M  G   
Sbjct: 306 ILIEDIAALKPTVFCAVPRVLERIYTGLQQKLSDGGFVKKKLFNFAFKYKHKNMEKGQPH 365

Query: 363 REASPLADLLAFRKVKARLGGRLRLVISGGAPLSTEVEEFLRVTCCAFLVQGYGLTETCG 422
            +ASP+AD + F+KVK  LGG +RL++SG APL+  +E FLRV  CA ++QGYGLTE+CG
Sbjct: 366 EQASPIADKIVFKKVKEGLGGNVRLILSGAAPLAAHIESFLRVVACAHVLQGYGLTESCG 425

Query: 423 PTTVCFPDEMCMVGTAGPVSVYSELRLEEVPEMGYSPLDDPPCGEVCVRGKTLFSGYYKN 482
            T V  P+E+ M+GT GP     ++RLE VPEMGY  L   P GE+C+RGKTLFSGYYK 
Sbjct: 426 GTFVSIPNELSMLGTVGPPVPNVDIRLESVPEMGYDALASNPRGEICIRGKTLFSGYYKR 485

Query: 483 PDLTRESIIDGWFHTGDIGQILPNGVVKIIDRKKNLIKISQGEYVALEYLENVYCVAPII 542
            DLT+E  IDGW HTGD+G+  P+G +KIIDRKKN+ K+SQGEYVA+E LEN+Y     I
Sbjct: 486 EDLTQEVFIDGWLHTGDVGEWQPDGAMKIIDRKKNIFKLSQGEYVAVENLENIYSHVAAI 545

Query: 543 EDIWVYGDSLKSMLVAVVVPCEEDTKKWAYSNGHAGSFLELCSLVQLQNYILSELKNAAE 602
           E IWVYG+S +S LVAVV P +   + WA  +  +G F  +C   + + ++L E    A+
Sbjct: 546 ESIWVYGNSYESYLVAVVCPSKIQIEHWAKEHKVSGDFESICRNQKTKEFVLGEFNRVAK 605

Query: 603 RNKLRGFEHIKGVILDPRPFDMERDLVTATLKKKRNKLLIYYQVEIDQLYEK 654
             KL+GFE IKGV LD  PFDMERDL+T + K KR +LL YYQ EID++Y+K
Sbjct: 606 DKKLKGFELIKGVHLDTVPFDMERDLITPSYKMKRPQLLKYYQKEIDEMYKK 657

Activation of long-chain fatty acids for both synthesis of cellular lipids, and degradation via beta-oxidation. Preferentially uses palmitate, palmitoleate, oleate and linoleate.

Arabidopsis thaliana (taxid: 3702)

EC: 6

EC: .

EC: 2

EC: .

EC: 1

EC: .

EC: 3

>sp|Q9XIA9|LACS2_ARATH Long chain acyl-CoA synthetase 2 OS=Arabidopsis thaliana GN=LACS2 PE=2 SV=1

 Score =  619 bits (1597), Expect = e-176,   Method: Compositional matrix adjust.
 Identities = 306/649 (47%), Positives = 420/649 (64%), Gaps = 2/649 (0%)

Query: 8   VEEGKEGKDGKPSVGPVYRNLLASNGFPSVDSDLNTAWDIFSMSVQKYPGNRMLGWRPFV 67
           VEEG+      PS GPVYR   A +G   + +D+++ W  FS +V+KYP  +MLG R   
Sbjct: 11  VEEGRPATAEHPSAGPVYRCKYAKDGLLDLPTDIDSPWQFFSEAVKKYPNEQMLGQRVTT 70

Query: 68  DGKFGPYVWKTYKEVYEEVLQIVSALRASGAEPGCRVGIYGANCPQWVEAMEACNALSLI 127
           D K GPY W TYKE ++  ++I SA+R+ G +PG   GIYGANCP+W+ AMEAC +  + 
Sbjct: 71  DSKVGPYTWITYKEAHDAAIRIGSAIRSRGVDPGHCCGIYGANCPEWIIAMEACMSQGIT 130

Query: 128 CVPLYDTLGPGAVNFILDHAEIDFVFVQDKKVKELLSPDCRSAQRLRVMVCFTSLTAEQK 187
            VPLYD+LG  AV FI++HAE+  VFVQ+K V  +LS     +  L+ +V F  +++ QK
Sbjct: 131 YVPLYDSLGVNAVEFIINHAEVSLVFVQEKTVSSILSCQKGCSSNLKTIVSFGEVSSTQK 190

Query: 188 EMAVQTGIKPYSWDEFLHLGKVNEMEILPPQPFNICTIMYTSGTSGDPKGVVLTHETIAT 247
           E A    +  +SW+EF  +G ++E  +   +  +ICTIMYTSGT+G+PKGV+L +  I+ 
Sbjct: 191 EEAKNQCVSLFSWNEFSLMGNLDEANLPRKRKTDICTIMYTSGTTGEPKGVILNNAAISV 250

Query: 248 FVSGVDLFLDQFEDKMTVDDVYLSFLPLAHILDRVIEEYFFRRGASVGYYHGDLNALRDD 307
            V  +D  L+  +      DV+ S+LPLAH  D+V+E YF  RG+SVGY+ GD+  L DD
Sbjct: 251 QVLSIDKMLEVTDRSCDTSDVFFSYLPLAHCYDQVMEIYFLSRGSSVGYWRGDIRYLMDD 310

Query: 308 LMELKPTLLAGVPRVFEKIHEGIKKALEELRPLRRRIFDALYKYKLAWMNMGYKQREASP 367
           +  LKPT+  GVPRV++K++ GI + +     +R+++FD  Y YKL  M  G+ Q EASP
Sbjct: 311 VQALKPTVFCGVPRVYDKLYAGIMQKISASGLIRKKLFDFAYNYKLGNMRKGFSQEEASP 370

Query: 368 LADLLAFRKVKARLGGRLRLVISGGAPLSTEVEEFLRVTCCAFLVQGYGLTETCGPTTVC 427
             D L F K+K  LGGR  +++SG APL   VEEFLR+   + L QGYGLTE+CG +   
Sbjct: 371 RLDRLMFDKIKEALGGRAHMLLSGAAPLPRHVEEFLRIIPASNLSQGYGLTESCGGSFTT 430

Query: 428 FPDEMCMVGTAGPVSVYSELRLEEVPEMGYSPLD-DPPCGEVCVRGKTLFSGYYKNPDLT 486
                 MVGT G      E RL  VPEMGY     D P GE+C+RG ++FSGY+K  DLT
Sbjct: 431 LAGVFSMVGTVGVPMPTVEARLVSVPEMGYDAFSADVPRGEICLRGNSMFSGYHKRQDLT 490

Query: 487 RESIIDGWFHTGDIGQILPNGVVKIIDRKKNLIKISQGEYVALEYLENVYCVAPIIEDIW 546
            + +IDGWFHTGDIG+   +G +KIIDRKKN+ K+SQGEYVA+E LEN Y   P+I  IW
Sbjct: 491 DQVLIDGWFHTGDIGEWQEDGSMKIIDRKKNIFKLSQGEYVAVENLENTYSRCPLIAQIW 550

Query: 547 VYGDSLKSMLVAVVVPCEEDTKKWAYSNGHA-GSFLELCSLVQLQNYILSELKNAAERNK 605
           VYG+S +S LV VVVP  +  + WA  N  +   F  LC  ++ Q Y L EL + A++ +
Sbjct: 551 VYGNSFESFLVGVVVPDRKAIEDWAKLNYQSPNDFESLCQNLKAQKYFLDELNSTAKQYQ 610

Query: 606 LRGFEHIKGVILDPRPFDMERDLVTATLKKKRNKLLIYYQVEIDQLYEK 654
           L+GFE +K + L+P PFD+ERDL+T T K KR +LL +Y+  +DQLY +
Sbjct: 611 LKGFEMLKAIHLEPNPFDIERDLITPTFKLKRPQLLQHYKGIVDQLYSE 659

Activation of long-chain fatty acids for both synthesis of cellular lipids, and degradation via beta-oxidation. Acts in the cutin pathway. Preferentially uses palmitate, palmitoleate, oleate and linoleate. Required for repression of lateral root formation through its role in cutin biosynthesis and subsequent aerial tissues permeability.

Arabidopsis thaliana (taxid: 3702)

EC: 6

EC: .

EC: 2

EC: .

EC: 1

EC: .

EC: 3

>sp|Q8LPS1|LACS6_ARATH Long chain acyl-CoA synthetase 6, peroxisomal OS=Arabidopsis thaliana GN=LACS6 PE=1 SV=1

 Score =  423 bits (1087), Expect = e-117,   Method: Compositional matrix adjust.
 Identities = 253/622 (40%), Positives = 347/622 (55%), Gaps = 17/622 (2%)

Query: 40  DLNTAWDIFSMSVQKYPGNRMLGWRPFVDGKFGPYVWKTYKEVYEEVLQIVSALRASGAE 99
           D+ T  D F  +V  +   + LG R  VDG  G Y W TY E       + S L   G  
Sbjct: 82  DIATLHDNFEHAVHDFRDYKYLGTRVRVDGTVGDYKWMTYGEAGTARTALGSGLVHHGIP 141

Query: 100 PGCRVGIYGANCPQWVEAMEACNALSLICVPLYDTLGPGAVNFILDHAEIDFVFVQDKKV 159
            G  VGIY  N P+W+    AC++ S + VPLYDTLGP AV FI++HA +  +F   + +
Sbjct: 142 MGSSVGIYFINRPEWLIVDHACSSYSYVSVPLYDTLGPDAVKFIVNHATVQAIFCVAETL 201

Query: 160 KELLSPDCRSAQRLRVMVCFTSLTAEQKEMAVQT-GIKPYSWDEFLHLGKVNEMEILPPQ 218
             LLS  C S      +V       E       + G+K  S+   L+ G+ N     PP+
Sbjct: 202 NSLLS--CLSEMPSVRLVVVVGGLIESLPSLPSSSGVKVVSYSVLLNQGRSNPQRFFPPK 259

Query: 219 PFNICTIMYTSGTSGDPKGVVLTHETIATFVSGVDLFLDQFEDKMTVDDVYLSFLPLAHI 278
           P ++ TI YTSGT+G PKGVVLTH  +   V+G       F  K    DVY+S+LPLAHI
Sbjct: 260 PDDVATICYTSGTTGTPKGVVLTHANLIANVAGS-----SFSVKFFSSDVYISYLPLAHI 314

Query: 279 LDRVIEEYFFRRGASVGYYHGDLNALRDDLMELKPTLLAGVPRVFEKIHEGIKKALEELR 338
            +R  +      G +VG+Y GD   L DDL  L+PT+ + VPR++ +I+ GI  A++   
Sbjct: 315 YERANQILTVYFGVAVGFYQGDNMKLLDDLAALRPTVFSSVPRLYNRIYAGIINAVKTSG 374

Query: 339 PLRRRIFDALYKYKLAWMNMGYKQREASPLADLLAFRKVKARLGGRLRLVISGGAPLSTE 398
            L+ R+F+A Y  K   +  G   + ASP+ D L F K+K RLGGR+R + SG +PLS E
Sbjct: 375 GLKERLFNAAYNAKKQALLNG---KSASPIWDRLVFNKIKDRLGGRVRFMTSGASPLSPE 431

Query: 399 VEEFLRVTCCAFLVQGYGLTETCGPTTVCFPDEM-CMVGTAGPVSVYSELRLEEVPEMGY 457
           V EFL+V     + +GYG+TET     +   DE   + G  G  +   E++L +VPEM Y
Sbjct: 432 VMEFLKVCFGGRVTEGYGMTETS--CVISGMDEGDNLTGHVGSPNPACEVKLVDVPEMNY 489

Query: 458 SPLDDP-PCGEVCVRGKTLFSGYYKNPDLTRESII-DGWFHTGDIGQILPNGVVKIIDRK 515
           +  D P P GE+CVRG  +F+GYYK+   T+E I  DGW HTGDIG  LP G +KIIDRK
Sbjct: 490 TSADQPHPRGEICVRGPIIFTGYYKDEIQTKEVIDEDGWLHTGDIGLWLPGGRLKIIDRK 549

Query: 516 KNLIKISQGEYVALEYLENVYCVAPIIEDIWVYGDSLKSMLVAVVVPCEEDTKKWAYSNG 575
           KN+ K++QGEY+A E +ENVY     +   ++YGDS  S LVAVV    +  K WA S G
Sbjct: 550 KNIFKLAQGEYIAPEKIENVYAKCKFVGQCFIYGDSFNSSLVAVVSVDPDVLKSWAASEG 609

Query: 576 -HAGSFLELCSLVQLQNYILSELKNAAERNKLRGFEHIKGVILDPRPFDMERDLVTATLK 634
              G   ELC+  +++  +LS++       +LRGFE  K V L   PF +E  L+T T K
Sbjct: 610 IKGGDLRELCNNPRVKAAVLSDMDTVGREAQLRGFEFAKAVTLVLEPFTLENGLLTPTFK 669

Query: 635 KKRNKLLIYYQVEIDQLYEKLA 656
            KR +   Y+   I  +Y++L 
Sbjct: 670 IKRPQAKEYFAEAITNMYKELG 691

Activation of long-chain fatty acids for both synthesis of cellular lipids, and degradation via beta-oxidation. Preferentially uses palmitate, palmitoleate, oleate, linoleate and eicosenoate. Might play a regulatory role both in fatty acid import into glyoxysomes and in fatty acid beta-oxidation. Displays redundant function with LACS7 into the seed development process.

Arabidopsis thaliana (taxid: 3702)

EC: 6

EC: .

EC: 2

EC: .

EC: 1

EC: .

EC: 3

>sp|Q8LKS5|LACS7_ARATH Long chain acyl-CoA synthetase 7, peroxisomal OS=Arabidopsis thaliana GN=LACS7 PE=1 SV=2

 Score =  419 bits (1077), Expect = e-116,   Method: Compositional matrix adjust.
 Identities = 243/623 (39%), Positives = 349/623 (56%), Gaps = 19/623 (3%)

Query: 40  DLNTAWDIFSMSVQKYPGNRMLGWRPFVDGKFGPYVWKTYKEVYEEVLQIVSALRASGAE 99
           ++ T  D F  +V+ Y  N+ LG R   DG  G Y W TY E   E   I S L   G  
Sbjct: 82  EIGTLHDNFVHAVETYAENKYLGTRVRSDGTIGEYSWMTYGEAASERQAIGSGLLFHGVN 141

Query: 100 PGCRVGIYGANCPQWVEAMEACNALSLICVPLYDTLGPGAVNFILDHAEIDFVFVQDKKV 159
            G  VG+Y  N P+W+    AC A S + VPLYDTLGP AV F+++HA +  +F   + +
Sbjct: 142 QGDCVGLYFINRPEWLVVDHACAAYSFVSVPLYDTLGPDAVKFVVNHANLQAIFCVPQTL 201

Query: 160 KELLSPDCRSAQRLRVMVCFTSLTAEQKEMAVQTGIKPYSWDEFLHLGKVNEMEILPPQP 219
             LLS        +R++V           +   TG+   S+ + L  G+ +     PP+P
Sbjct: 202 NILLS-FLAEIPSIRLIVVVGGADEHLPSLPRGTGVTIVSYQKLLSQGRSSLHPFSPPKP 260

Query: 220 FNICTIMYTSGTSGDPKGVVLTHETIATFVSGVDLFLDQFEDKMTVDDVYLSFLPLAHIL 279
            +I TI YTSGT+G PKGVVLTH  +   V+G  +     E +    DVY+S+LPLAHI 
Sbjct: 261 EDIATICYTSGTTGTPKGVVLTHGNLIANVAGSSV-----EAEFFPSDVYISYLPLAHIY 315

Query: 280 DRVIEEYFFRRGASVGYYHGDLNALRDDLMELKPTLLAGVPRVFEKIHEGIKKALEELRP 339
           +R  +      G +VG+Y GD+  L DD   L+PT+   VPR++ +I++GI  A++    
Sbjct: 316 ERANQIMGVYGGVAVGFYQGDVFKLMDDFAVLRPTIFCSVPRLYNRIYDGITSAVKSSGV 375

Query: 340 LRRRIFDALYKYKLAWMNMGYKQREASPLADLLAFRKVKARLGGRLRLVISGGAPLSTEV 399
           +++R+F+  Y  K   +  G   R  S   D L F K+K +LGGR+R + SG +PLS +V
Sbjct: 376 VKKRLFEIAYNSKKQAIING---RTPSAFWDKLVFNKIKEKLGGRVRFMGSGASPLSPDV 432

Query: 400 EEFLRVTCCAFLVQGYGLTETCGPTTVCFPDEMCMVGTAGPVSVYSELRLEEVPEMGYSP 459
            +FLR+     + +GYG+TET    +    D   + G  G  +   E++L +VPEM Y+ 
Sbjct: 433 MDFLRICFGCSVREGYGMTETSCVIS-AMDDGDNLSGHVGSPNPACEVKLVDVPEMNYTS 491

Query: 460 LDDP-PCGEVCVRGKTLFSGYYKNPDLTRESII-DGWFHTGDIGQILPNGVVKIIDRKKN 517
            D P P GE+CVRG  +F GYYK+ + TRE +  DGW HTGDIG  LP G +KIIDRKKN
Sbjct: 492 DDQPYPRGEICVRGPIIFKGYYKDEEQTREILDGDGWLHTGDIGLWLPGGRLKIIDRKKN 551

Query: 518 LIKISQGEYVALEYLENVYCVAPIIEDIWVYGDSLKSMLVAVVVPCEEDTKKWAYSNG-- 575
           + K++QGEY+A E +ENVY     +   +++GDS  S LVA+V    E  K WA S G  
Sbjct: 552 IFKLAQGEYIAPEKIENVYTKCRFVSQCFIHGDSFNSSLVAIVSVDPEVMKDWAASEGIK 611

Query: 576 --HAGSFLELCSLVQLQNYILSELKNAAERNKLRGFEHIKGVILDPRPFDMERDLVTATL 633
             H G   +LC+  +++  +L+E+ +     +LRGFE  K V L P PF +E  L+T T 
Sbjct: 612 YEHLG---QLCNDPRVRKTVLAEMDDLGREAQLRGFEFAKAVTLVPEPFTLENGLLTPTF 668

Query: 634 KKKRNKLLIYYQVEIDQLYEKLA 656
           K KR +   Y+   I ++Y ++A
Sbjct: 669 KIKRPQAKAYFAEAISKMYAEIA 691

Activation of long-chain fatty acids for both synthesis of cellular lipids, and degradation via beta-oxidation. Preferentially uses palmitate, palmitoleate, oleate, linoleate and eicosenoate. Displays redundant function with LACS7 into the seed development process.

Arabidopsis thaliana (taxid: 3702)

EC: 6

EC: .

EC: 2

EC: .

EC: 1

EC: .

EC: 3

>sp|Q1ZXQ4|FCSB_DICDI Fatty acyl-CoA synthetase B OS=Dictyostelium discoideum GN=fcsB PE=2 SV=1

 Score =  410 bits (1054), Expect = e-113,   Method: Compositional matrix adjust.
 Identities = 230/657 (35%), Positives = 367/657 (55%), Gaps = 16/657 (2%)

Query: 4   FAAQVEEGKEGKDGKPSVGPVYRNLLASNGFPSV--DSDLNTAWDIFSMSVQKYPGNRML 61
           +   VE G++ ++G    G + RN   ++   S   D ++ T +D    S +KY   +  
Sbjct: 27  YGQTVEIGEKPENG----GRIRRNSACADHLISFLEDDEIYTLYDSLVKSCKKYGERKCF 82

Query: 62  GWRPF-VDGKFGPYVWKTYKEVYEEVLQIVSALRASGAEPGCRVGIYGANCPQWVEAMEA 120
           G R    +G  G + W +Y    E    I   L   G +P  +VGI+  N  +W+    A
Sbjct: 83  GERKKDSNGNLGKFEWISYNTYLERCEYIQQGLCELGLKPKSKVGIFSKNRLEWLIVHSA 142

Query: 121 CNALSLICVPLYDTLGPGAVNFILDHAEIDFVFVQDKKVKELLSPDCRSAQRLRVMVCFT 180
               S   V  Y+TLG  +++++ +HAEI   F   + +++ L    +  + L+ ++CF 
Sbjct: 143 SFIQSYCVVSFYETLGVESLSYVTEHAEIGLAFCSAETLQKTLDI-AKGVKVLKTIICFD 201

Query: 181 SLTAEQKEMAVQTGIKPYSWDEFLHLGK--VNEMEILPPQPFNICTIMYTSGTSGDPKGV 238
           S+  E   +A + G+  Y++DE +  GK    + +  PP P  + TIMYTSGT+G PKGV
Sbjct: 202 SIDKEHYNIAKELGVTLYTYDEIMKKGKEANGKHKHTPPTPDTLSTIMYTSGTTGPPKGV 261

Query: 239 VLTHETIATFVSGVDLFLDQFEDKMTVDDVYLSFLPLAHILDRVIEEYFFRRGASVGYYH 298
           ++TH+ + + V  V  F+  ++      DV+ S+LP AH+L+RV+    F  GA++G + 
Sbjct: 262 MITHKNLTSVVCAVSDFIKVYDT-----DVHYSYLPYAHVLERVVILAAFHFGAAIGIFS 316

Query: 299 GDLNALRDDLMELKPTLLAGVPRVFEKIHEGIKKALEELRPLRRRIFDALYKYKLAWMNM 358
           GD++ +  ++  L PTL  GVPRVFE+I   + K + +   L R +F+  Y  K   +  
Sbjct: 317 GDISNILVEVKLLSPTLFIGVPRVFERIKTNVFKEISKKPALLRTLFNGAYNLKYLSIQH 376

Query: 359 GYKQREASPLADLLAFRKVKARLGGRLRLVISGGAPLSTEVEEFLRVTCCAFLVQGYGLT 418
           G+K      + DL+ F K+K  LGG++R+++SG APLS + E FLRV  C  ++QGYG +
Sbjct: 377 GFKLPIIEKVLDLVFFSKIKQALGGKVRVILSGSAPLSFDTEVFLRVVMCCCVLQGYGAS 436

Query: 419 ETCGPTTVCFPDEMCMVGTAGPVSVYSELRLEEVPEMGYSPLDDPPCGEVCVRGKTLFSG 478
           E CG       D+   VGT GP    +E++L +VPE+GY    +   GEVC+RG ++ SG
Sbjct: 437 EGCGGDACKRLDDES-VGTIGPPFASNEIKLVDVPELGYDSNGEVQTGEVCLRGPSISSG 495

Query: 479 YYKNPDLTRESIIDGWFHTGDIGQILPNGVVKIIDRKKNLIKISQGEYVALEYLENVYCV 538
           YYK+ + TRE   DGWFHTGDIG+   +G + I+DRKKN+ K+SQGEYVA+E +E +   
Sbjct: 496 YYKDEEKTREEFKDGWFHTGDIGRWNRDGSLSIVDRKKNIFKLSQGEYVAVEKIETIVVK 555

Query: 539 APIIEDIWVYGDSLKSMLVAVVVPCEEDTKKWAYSNGHAGSFLELCSLVQLQNYILSELK 598
           +  +E + +YGDS KS ++A++ P  E   +WA S        E+C        +L ++ 
Sbjct: 556 SEYVEQVCIYGDSQKSCVIAIIHPHPESCSEWAGSKKTDKDIKEICKNQDFIKVVLDDII 615

Query: 599 NAAERNKLRGFEHIKGVILDPRPFDMERDLVTATLKKKRNKLLIYYQVEIDQLYEKL 655
              +++ L GFE  K + L P  F  + +L+T + K KR+++  Y++ EI +LY KL
Sbjct: 616 KNCKKSGLHGFEIPKAIHLTPEAFSDQNNLLTPSFKLKRHEIKKYFEDEIKKLYSKL 672

Long chain fatty acid acyl-CoA synthetases catalyze the formation of a thiester bond between a free fatty acid and coenzyme A during fatty acid metabolic process.

Dictyostelium discoideum (taxid: 44689)

EC: 6

EC: .

EC: 2

EC: .

EC: 1

EC: .

EC: 3

>sp|Q55DR6|FCSA_DICDI Fatty acyl-CoA synthetase A OS=Dictyostelium discoideum GN=fcsA PE=1 SV=1

 Score =  399 bits (1025), Expect = e-110,   Method: Compositional matrix adjust.
 Identities = 233/624 (37%), Positives = 350/624 (56%), Gaps = 21/624 (3%)

Query: 36  SVDSDLNTAWDIFSMSVQKYPGNRMLGWRPFV-DGKFGPYVWKTYKEVYEEVLQIVSALR 94
           S D    T +D++   + K   +  LG R  + DGK G Y W +YK+       I SAL 
Sbjct: 48  SPDGKTFTLYDVYR--INKDSDSNFLGIRELLADGKRGDYKWISYKQACIRANNIGSALV 105

Query: 95  ASGAEPGCRVGIYGANCPQWVEAMEACNALSLICVPLYDTLGPGAVNFILDHAEIDFVFV 154
             G   G R+GI+  N P+WV +  A    SL+ V LY TLG  A+ ++++H+EI  +  
Sbjct: 106 QLGLNKGDRIGIFSINRPEWVLSDMAAMNHSLVPVALYATLGANAIEYVVNHSEISVLLC 165

Query: 155 QDKKVKELLSPDCRSAQRLRVMVCFTSL-TAEQKEMAVQTGIKPYSWDEFLHLGKVNEME 213
           + K V+++LS        ++ +V +  L  A   +      +K Y   +F  LG+ N  +
Sbjct: 166 EGKNVEKILS---MPGTTIKTIVSYDPLPQATLDKFKDNENVKLYLLSDFEKLGEQNPAQ 222

Query: 214 ILPPQPFNICTIMYTSGTSGDPKGVVLTHETIATFVSGVDLFLDQFEDKMTVDDVYLSFL 273
              P P ++CT++YTSG++G+PKGV+LTH  + + V+G +         +  +DV++S+L
Sbjct: 223 HEVPSPEDLCTLLYTSGSTGNPKGVMLTHTNMVSEVAGANFS----PAGVIPEDVHMSYL 278

Query: 274 PLAHILDRVIEEYFFRRGASVGYYHGDLNALRDDLMELKPTLLAGVPRVFEKIHEGIKKA 333
           PLAH  +R +       G  +G++ G +  L +D+  L+PT L G PRV++++H+ +   
Sbjct: 279 PLAHSFERAVVSLMCYVGGQIGFFSGLIPELFNDIQVLRPTFLCGAPRVWQRLHDKLWFT 338

Query: 334 LEELRPLRRRIFDALYKYKLAWMNMGYKQREASPLADLLAFRKVKARLGGRLRLVISGGA 393
           +     L++ +F+     K + + +G      +P+ D L F K K RLGGR++ ++SG A
Sbjct: 339 VNNDSWLKKFLFNWGLNSKQSALRLG----STTPIWDKLVFSKTKDRLGGRVKFILSGSA 394

Query: 394 PLSTEVEEFLRVTCCAFLVQGYGLTETCGPTTVCFPDEMCMVGTAGPVSVYSELRLEEVP 453
           PL  ++ EFLR   C  +V GYGL+E  G  +V +P++   VG  GP     E++L +VP
Sbjct: 395 PLDPKLAEFLRACFCCPVVSGYGLSENVGGASVAYPEDN-NVGHVGPPLSACEMKLIDVP 453

Query: 454 EMGYSPLDDP-PCGEVCVRGKTLFSGYYKNPDLTRESII-DGWFHTGDIGQILPNGVVKI 511
           EM Y   D P P GEVC+RG  +F GY+K+P+ T+E +  DGWFHTGDIG+   NG + I
Sbjct: 454 EMNYFSTDKPCPRGEVCIRGFNVFKGYFKDPEKTKEDLKEDGWFHTGDIGRWNENGTLSI 513

Query: 512 IDRKKNLIKISQGEYVALEYLENVYCVAPIIEDIWVYGDSLKSMLVAVVVPCEEDTKKW- 570
           IDRKKN+ K+SQGEYVA EYLE+V+  +P    ++VYGDSL S LV VVVP  E  +K  
Sbjct: 514 IDRKKNIFKLSQGEYVAAEYLESVFVRSPFASQVFVYGDSLNSFLVGVVVPDFEVVQKLF 573

Query: 571 --AYSNGHAGSFLELCSLVQLQNYILSELKNAAERNKLRGFEHIKGVILDPRPFDMERDL 628
              Y      +   L    +L   ILS     A   KL GFE +K + ++  PF  E +L
Sbjct: 574 ASKYPELDVSNHATLAKSKELYKEILSSFDACAAEAKLHGFEKLKHIYVEHEPFTEENNL 633

Query: 629 VTATLKKKRNKLLIYYQVEIDQLY 652
           +T + K KR +L   YQ  ID LY
Sbjct: 634 LTPSFKPKRPQLKERYQTIIDTLY 657

Long chain fatty acid acyl-CoA synthetases catalyze the formation of a thiester bond between a free fatty acid and coenzyme A during fatty acid metabolic process. May mediate fatty acid retrieval from the lumen of endosomes into the cytoplasm.

Dictyostelium discoideum (taxid: 44689)

EC: 6

EC: .

EC: 2

EC: .

EC: 1

EC: .

EC: 3

>sp|Q9ULC5|ACSL5_HUMAN Long-chain-fatty-acid--CoA ligase 5 OS=Homo sapiens GN=ACSL5 PE=1 SV=1

 Score =  390 bits (1003), Expect = e-107,   Method: Compositional matrix adjust.
 Identities = 224/624 (35%), Positives = 353/624 (56%), Gaps = 21/624 (3%)

Query: 39  SDLNTAWDIFSMSVQKYPGNRMLGWRPFVDGKFGPYVWKTYKEVYEEVLQIVSALRASG- 97
           SD  T +++F   +        LG+R        PY W +YK+V +    + S L   G 
Sbjct: 72  SDAKTMYEVFQRGLAVSDNGPCLGYRK----PNQPYRWLSYKQVSDRAEYLGSCLLHKGY 127

Query: 98  -AEPGCRVGIYGANCPQWVEAMEACNALSLICVPLYDTLGPGAVNFILDHAEIDFVFVQD 156
            + P   VGI+  N P+W+ +  AC   S++ VPLYDTLGP A+  I++ A+I  V    
Sbjct: 128 KSSPDQFVGIFAQNRPEWIISELACYTYSMVAVPLYDTLGPEAIVHIVNKADIAMVICDT 187

Query: 157 KKVKELLSPDCRSA--QRLRVMVCFTSLTAEQKEMAVQTGIKPYSWDEFLHLGKVNEMEI 214
            +   +L  +        L+V++       + K+   ++GI+  S  +  +LGK +  + 
Sbjct: 188 PQKALVLIGNVEKGFTPSLKVIILMDPFDDDLKQRGEKSGIEILSLYDAENLGKEHFRKP 247

Query: 215 LPPQPFNICTIMYTSGTSGDPKGVVLTHETIATFVSGVDLFLDQFEDKM--TVDDVYLSF 272
           +PP P ++  I +TSGT+GDPKG ++TH+ I   VS    FL   E     T DDV +S+
Sbjct: 248 VPPSPEDLSVICFTSGTTGDPKGAMITHQNI---VSNAAAFLKCVEHAYEPTPDDVAISY 304

Query: 273 LPLAHILDRVIEEYFFRRGASVGYYHGDLNALRDDLMELKPTLLAGVPRVFEKIHEGIKK 332
           LPLAH+ +R+++   +  GA VG++ GD+  L DD+  LKPTL   VPR+  +I++ ++ 
Sbjct: 305 LPLAHMFERIVQAVVYSCGARVGFFQGDIRLLADDMKTLKPTLFPAVPRLLNRIYDKVQN 364

Query: 333 ALEELRPLRRRIFDALYKYKLAWMNMGYKQREASPLADLLAFRKVKARLGGRLRLVISGG 392
             E   PL++ +       K   +  G  + ++    D L F K++  LGGR+R++++G 
Sbjct: 365 --EAKTPLKKFLLKLAVSSKFKELQKGIIRHDS--FWDKLIFAKIQDSLGGRVRVIVTGA 420

Query: 393 APLSTEVEEFLRVTCCAFLVQGYGLTETCGPTTVCFPDEMCMVGTAGPVSVYSELRLEEV 452
           AP+ST V  F R      + + YG TE  G  T   P +        P++  + ++LE+V
Sbjct: 421 APMSTSVMTFFRAAMGCQVYEAYGQTECTGGCTFTLPGDWTSGHVGVPLAC-NYVKLEDV 479

Query: 453 PEMGYSPLDDPPCGEVCVRGKTLFSGYYKNPDLTRESI-IDGWFHTGDIGQILPNGVVKI 511
            +M Y  +++   GEVC++G  +F GY K+P+ T+E++  DGW HTGDIG+ LPNG +KI
Sbjct: 480 ADMNYFTVNNE--GEVCIKGTNVFKGYLKDPEKTQEALDSDGWLHTGDIGRWLPNGTLKI 537

Query: 512 IDRKKNLIKISQGEYVALEYLENVYCVAPIIEDIWVYGDSLKSMLVAVVVPCEEDTKKWA 571
           IDRKKN+ K++QGEY+A E +EN+Y  +  +  I+V+G+SL+S LV VVVP  +    +A
Sbjct: 538 IDRKKNIFKLAQGEYIAPEKIENIYNRSQPVLQIFVHGESLRSSLVGVVVPDTDVLPSFA 597

Query: 572 YSNGHAGSFLELCSLVQLQNYILSELKNAAERNKLRGFEHIKGVILDPRPFDMERDLVTA 631
              G  GSF ELC    ++  IL +L+   + + L+ FE +K + L P PF +E  L+T 
Sbjct: 598 AKLGVKGSFEELCQNQVVREAILEDLQKIGKESGLKTFEQVKAIFLHPEPFSIENGLLTP 657

Query: 632 TLKKKRNKLLIYYQVEIDQLYEKL 655
           TLK KR +L  Y++ +ID LYE +
Sbjct: 658 TLKAKRGELSKYFRTQIDSLYEHI 681

Acyl-CoA synthetases (ACSL) activate long-chain fatty acids for both synthesis of cellular lipids, and degradation via beta-oxidation. ACSL5 may activate fatty acids from exogenous sources for the synthesis of triacylglycerol destined for intracellular storage (By similarity). Utilizes a wide range of saturated fatty acids with a preference for C16-C18 unsaturated fatty acids (By similarity). It was suggested that it may also stimulate fatty acid oxidation (By similarity). At the villus tip of the crypt-villus axis of the small intestine may sensitize epithelial cells to apoptosis specifically triggered by the death ligand TRAIL. May have a role in the survival of glioma cells.

Homo sapiens (taxid: 9606)

EC: 6

EC: .

EC: 2

EC: .

EC: 1

EC: .

EC: 3

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	660
255548375	660	long-chain-fatty-acid CoA ligase, putati	0.998	0.998	0.793	0.0
224068616	665	predicted protein [Populus trichocarpa]	0.998	0.990	0.780	0.0
225437622	662	PREDICTED: long chain acyl-CoA synthetas	1.0	0.996	0.769	0.0
356505647	662	PREDICTED: long chain acyl-CoA synthetas	0.993	0.990	0.768	0.0
356572815	662	PREDICTED: long chain acyl-CoA synthetas	0.992	0.989	0.764	0.0
357511417	668	Annotation was added to scaffolds in Nov	0.990	0.979	0.740	0.0
356534712	660	PREDICTED: long chain acyl-CoA synthetas	0.993	0.993	0.754	0.0
356499773	660	PREDICTED: long chain acyl-CoA synthetas	0.992	0.992	0.758	0.0
449518374	660	PREDICTED: long chain acyl-CoA synthetas	0.992	0.992	0.740	0.0
357442179	686	Annotation was added to scaffolds in Nov	0.990	0.953	0.707	0.0

>gi|255548375|ref|XP_002515244.1| long-chain-fatty-acid CoA ligase, putative [Ricinus communis] gi|223545724|gb|EEF47228.1| long-chain-fatty-acid CoA ligase, putative [Ricinus communis]

 Score = 1102 bits (2850), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 523/659 (79%), Positives = 584/659 (88%)

Query: 1   MKIFAAQVEEGKEGKDGKPSVGPVYRNLLASNGFPSVDSDLNTAWDIFSMSVQKYPGNRM 60
           MK+FA +VEEG+EGKDG PSVGPVYRN+L+ N FP+ D D++TAWD+FS+SV+KYP N+M
Sbjct: 1   MKVFAVEVEEGREGKDGNPSVGPVYRNVLSKNEFPAPDCDMDTAWDLFSVSVKKYPENKM 60

Query: 61  LGWRPFVDGKFGPYVWKTYKEVYEEVLQIVSALRASGAEPGCRVGIYGANCPQWVEAMEA 120
           LGWR FV+GK GPYVWKTYKEVYEEVLQI SALRASGAEPGCRVGIYG+NCPQW+ AMEA
Sbjct: 61  LGWRKFVNGKVGPYVWKTYKEVYEEVLQIGSALRASGAEPGCRVGIYGSNCPQWIVAMEA 120

Query: 121 CNALSLICVPLYDTLGPGAVNFILDHAEIDFVFVQDKKVKELLSPDCRSAQRLRVMVCFT 180
           C+A SL+CVPLYDTLGP AVNFI+DHAEIDF FVQDKKVKELL+PDC SA RL+ +VCFT
Sbjct: 121 CSAHSLVCVPLYDTLGPNAVNFIVDHAEIDFAFVQDKKVKELLNPDCGSASRLKTVVCFT 180

Query: 181 SLTAEQKEMAVQTGIKPYSWDEFLHLGKVNEMEILPPQPFNICTIMYTSGTSGDPKGVVL 240
           SLT E+K+ A Q  IKPYSW+EFL LGK N  E  PP PF+ICTIMYTSGTSGDPKGVVL
Sbjct: 181 SLTEEEKDKAEQIQIKPYSWEEFLRLGKENPSETSPPHPFSICTIMYTSGTSGDPKGVVL 240

Query: 241 THETIATFVSGVDLFLDQFEDKMTVDDVYLSFLPLAHILDRVIEEYFFRRGASVGYYHGD 300
           THE + +F+  VDLF++QFEDKMTVDDVYLSFLPLAHILDR+IEEYFFR+GA+VGYYHGD
Sbjct: 241 THEAVMSFLRSVDLFMEQFEDKMTVDDVYLSFLPLAHILDRMIEEYFFRKGAAVGYYHGD 300

Query: 301 LNALRDDLMELKPTLLAGVPRVFEKIHEGIKKALEELRPLRRRIFDALYKYKLAWMNMGY 360
           LNAL+DDLMELKPT LAGVPRVFEKIHEGIKKALEEL P+RRRIFDALYKYKL WMN+GY
Sbjct: 301 LNALKDDLMELKPTFLAGVPRVFEKIHEGIKKALEELNPVRRRIFDALYKYKLYWMNLGY 360

Query: 361 KQREASPLADLLAFRKVKARLGGRLRLVISGGAPLSTEVEEFLRVTCCAFLVQGYGLTET 420
           KQ+ ASPLADLLAFRKVKA+LGGRLRL+ISG APLSTEVEEFLRVTCCAF+VQGYGLTET
Sbjct: 361 KQKYASPLADLLAFRKVKAKLGGRLRLIISGAAPLSTEVEEFLRVTCCAFVVQGYGLTET 420

Query: 421 CGPTTVCFPDEMCMVGTAGPVSVYSELRLEEVPEMGYSPLDDPPCGEVCVRGKTLFSGYY 480
           CGP T+ FPDEMCM+G  G V V +ELRLEEVPEMGY+PL +PP GE+CVRGKTLFSGYY
Sbjct: 421 CGPVTIGFPDEMCMMGAVGAVCVCNELRLEEVPEMGYNPLGNPPRGEICVRGKTLFSGYY 480

Query: 481 KNPDLTRESIIDGWFHTGDIGQILPNGVVKIIDRKKNLIKISQGEYVALEYLENVYCVAP 540
           KNP+LTRE + DGWFHTGDIG+I PNGVVKIIDRKK+LIK+SQGEY+ALEYLENVY + P
Sbjct: 481 KNPELTRECMKDGWFHTGDIGEIHPNGVVKIIDRKKHLIKLSQGEYIALEYLENVYSITP 540

Query: 541 IIEDIWVYGDSLKSMLVAVVVPCEEDTKKWAYSNGHAGSFLELCSLVQLQNYILSELKNA 600
           I+EDIWVYGDS K ML+AVV   EE+TKKWAY NG   SF  LCSL QL  Y+LSELK+ 
Sbjct: 541 IVEDIWVYGDSSKPMLIAVVALNEENTKKWAYLNGFLDSFSALCSLDQLHEYVLSELKST 600

Query: 601 AERNKLRGFEHIKGVILDPRPFDMERDLVTATLKKKRNKLLIYYQVEIDQLYEKLAPGR 659
           AERNKLRGFE IKG IL+ RPFDMERDLVTATLKKKRNKLL YYQ+EIDQLY+ L   R
Sbjct: 601 AERNKLRGFERIKGAILESRPFDMERDLVTATLKKKRNKLLSYYQLEIDQLYKTLGGKR 659

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224068616|ref|XP_002302784.1| predicted protein [Populus trichocarpa] gi|222844510|gb|EEE82057.1| predicted protein [Populus trichocarpa]

 Score = 1095 bits (2833), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 517/662 (78%), Positives = 586/662 (88%), Gaps = 3/662 (0%)

Query: 1   MKIFAAQVEEGKEGKDGKPSVGPVYRNLLASNGFPSVDSDLNTAWDIFSMSVQKYPGNRM 60
           +K FAAQVEEG+EGKDGKPSVGPVYRNLL+   +P +D D+ T+WDIFS S +KYP  +M
Sbjct: 3   LKAFAAQVEEGREGKDGKPSVGPVYRNLLSKKEYPPLDRDVTTSWDIFSSSAKKYPEYKM 62

Query: 61  LGWRPFVDGKFGPYVWKTYKEVYEEVLQIVSALRASGAEPGCRVGIYGANCPQWVEAMEA 120
           LGWR FVDGK GPYVWKTYKEVY+EVLQI SALRASGAEPG RVGIYG+NCPQW+EAMEA
Sbjct: 63  LGWRKFVDGKVGPYVWKTYKEVYDEVLQISSALRASGAEPGYRVGIYGSNCPQWIEAMEA 122

Query: 121 CNALSLICVPLYDTLGPGAVNFILDHAEIDFVFVQDKKVKELLSPDCRSAQRLRVMVCFT 180
           CNA SL+CVPLYDT+GP AVNFI+DHAEIDFVFVQDKKVKELL PDC SAQRL+ +VCFT
Sbjct: 123 CNAQSLVCVPLYDTIGPRAVNFIIDHAEIDFVFVQDKKVKELLDPDCASAQRLKAIVCFT 182

Query: 181 SLTAEQKEMAVQTGIKPYSWDEFLHLGKVNEMEILPPQPFNICTIMYTSGTSGDPKGVVL 240
           SLT E+K+ A Q GIK YSW+E+L +GK N  EI PPQP +ICTIMYTSGTSGDPKGVV+
Sbjct: 183 SLTEEEKDRAAQMGIKSYSWEEYLCMGKENPSEIFPPQPLSICTIMYTSGTSGDPKGVVI 242

Query: 241 THETIATFVSGVDLFLDQFEDKMTVDDVYLSFLPLAHILDRVIEEYFFRRGASVGYYHGD 300
            HET+A FV G+DLF++QFEDKMT DDVYLSFLPLAH+LDR+IEEYFFR+GASVGYYHGD
Sbjct: 243 LHETVAAFVRGIDLFMEQFEDKMTTDDVYLSFLPLAHVLDRMIEEYFFRKGASVGYYHGD 302

Query: 301 LNALRDDLMELKPTLLAGVPRVFEKIHEGIK---KALEELRPLRRRIFDALYKYKLAWMN 357
           LNALRDDLMELKPT LAGVPRVFEKI EG++   KAL+EL PLRR IFD LY+YKL WMN
Sbjct: 303 LNALRDDLMELKPTCLAGVPRVFEKIQEGMEIPIKALQELSPLRRNIFDVLYRYKLGWMN 362

Query: 358 MGYKQREASPLADLLAFRKVKARLGGRLRLVISGGAPLSTEVEEFLRVTCCAFLVQGYGL 417
            GY+Q+ ASPLADLLAFRKVKA+LGGRLRL+I GGA LSTEVEEFLRVT CAF++QGYGL
Sbjct: 363 RGYRQKYASPLADLLAFRKVKAKLGGRLRLIICGGASLSTEVEEFLRVTSCAFVIQGYGL 422

Query: 418 TETCGPTTVCFPDEMCMVGTAGPVSVYSELRLEEVPEMGYSPLDDPPCGEVCVRGKTLFS 477
           TE+CGP T+ FPDEMCM+GT G V+VY++L LEEVPEMGY PL +PPCGE+C+RGKTLFS
Sbjct: 423 TESCGPATMAFPDEMCMLGTVGAVAVYNDLCLEEVPEMGYDPLGNPPCGEICLRGKTLFS 482

Query: 478 GYYKNPDLTRESIIDGWFHTGDIGQILPNGVVKIIDRKKNLIKISQGEYVALEYLENVYC 537
           GYYKNP+LTRES+ DGWFHTGDIG+ILPNGVVKIIDRKKNLIK+SQGEY+A+EYLENVY 
Sbjct: 483 GYYKNPELTRESMKDGWFHTGDIGEILPNGVVKIIDRKKNLIKLSQGEYIAIEYLENVYN 542

Query: 538 VAPIIEDIWVYGDSLKSMLVAVVVPCEEDTKKWAYSNGHAGSFLELCSLVQLQNYILSEL 597
             PI+EDIW+YGDS KSMLVAVVV  EE+TK WAY NGH GSF ELCSL QLQ  +LSEL
Sbjct: 543 NTPIVEDIWIYGDSCKSMLVAVVVLHEENTKSWAYLNGHMGSFTELCSLHQLQKLVLSEL 602

Query: 598 KNAAERNKLRGFEHIKGVILDPRPFDMERDLVTATLKKKRNKLLIYYQVEIDQLYEKLAP 657
           K  AERNKL+GFEHIKGVIL+  PFD+E+DLVTATLKKKRNKL+ +Y+VEID+LY+KLA 
Sbjct: 603 KTTAERNKLKGFEHIKGVILESCPFDIEKDLVTATLKKKRNKLVSHYRVEIDELYQKLAE 662

Query: 658 GR 659
           GR
Sbjct: 663 GR 664

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|225437622|ref|XP_002278345.1| PREDICTED: long chain acyl-CoA synthetase 1 [Vitis vinifera] gi|297744008|emb|CBI36978.3| unnamed protein product [Vitis vinifera]

 Score = 1086 bits (2809), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 508/660 (76%), Positives = 579/660 (87%)

Query: 1   MKIFAAQVEEGKEGKDGKPSVGPVYRNLLASNGFPSVDSDLNTAWDIFSMSVQKYPGNRM 60
           MK FA QVE G+EG+DGKPSVGPVYRN LA +GFP +DS+LNTAWD   +S +KYPGNRM
Sbjct: 1   MKTFAVQVENGREGRDGKPSVGPVYRNFLAKSGFPPMDSNLNTAWDNLRISSEKYPGNRM 60

Query: 61  LGWRPFVDGKFGPYVWKTYKEVYEEVLQIVSALRASGAEPGCRVGIYGANCPQWVEAMEA 120
           LGWR FV GK GPY WKTY+EVYEE+L I SAL+ASGA+PG RVGIYG+NCPQW+ AMEA
Sbjct: 61  LGWREFVGGKLGPYKWKTYREVYEEILHIGSALQASGAQPGSRVGIYGSNCPQWIVAMEA 120

Query: 121 CNALSLICVPLYDTLGPGAVNFILDHAEIDFVFVQDKKVKELLSPDCRSAQRLRVMVCFT 180
           C+A SLICVPLYDTLGPGAV++I+DHAE+DFVFVQDKKVKELL+PDCRSA+RL++MVCFT
Sbjct: 121 CSAYSLICVPLYDTLGPGAVDYIIDHAEVDFVFVQDKKVKELLNPDCRSAKRLKLMVCFT 180

Query: 181 SLTAEQKEMAVQTGIKPYSWDEFLHLGKVNEMEILPPQPFNICTIMYTSGTSGDPKGVVL 240
           S T EQK+ A   GIKPYSWDEFLH+GK N  E+ PPQP +ICTIMYTSGTSGDPKGVVL
Sbjct: 181 SPTEEQKDKAADIGIKPYSWDEFLHMGKENPSEVFPPQPLDICTIMYTSGTSGDPKGVVL 240

Query: 241 THETIATFVSGVDLFLDQFEDKMTVDDVYLSFLPLAHILDRVIEEYFFRRGASVGYYHGD 300
           THE + T V GVD+F++QFEDKMTVDDVYLSFLPLAHILDR+IEEYFF +GASVGYYHGD
Sbjct: 241 THENVTTIVRGVDIFMEQFEDKMTVDDVYLSFLPLAHILDRIIEEYFFHKGASVGYYHGD 300

Query: 301 LNALRDDLMELKPTLLAGVPRVFEKIHEGIKKALEELRPLRRRIFDALYKYKLAWMNMGY 360
           +NALR+DLMELKPTL AGVPRVFE++HEGIKKA++EL P+RRRIF  LYKYKL+WMN GY
Sbjct: 301 MNALREDLMELKPTLFAGVPRVFERVHEGIKKAVQELNPIRRRIFGVLYKYKLSWMNSGY 360

Query: 361 KQREASPLADLLAFRKVKARLGGRLRLVISGGAPLSTEVEEFLRVTCCAFLVQGYGLTET 420
           K REASPLADLLAFRKVKARLGGR+RL+ISGGAPLSTEVEEFLRVT CAFL QGYGLTET
Sbjct: 361 KHREASPLADLLAFRKVKARLGGRVRLIISGGAPLSTEVEEFLRVTSCAFLTQGYGLTET 420

Query: 421 CGPTTVCFPDEMCMVGTAGPVSVYSELRLEEVPEMGYSPLDDPPCGEVCVRGKTLFSGYY 480
           CG T++ FPDEM M+GT G VSVYSELRLEEVPEMGY P  DPP GE+CVRGKT+F+GY+
Sbjct: 421 CGLTSIGFPDEMSMIGTVGAVSVYSELRLEEVPEMGYDPFGDPPRGEICVRGKTIFAGYH 480

Query: 481 KNPDLTRESIIDGWFHTGDIGQILPNGVVKIIDRKKNLIKISQGEYVALEYLENVYCVAP 540
           KNP+LT ESI DGWFHTGDIG++LPNGV+KIIDRKKNL+K+SQGEYVA+EYLE VY  A 
Sbjct: 481 KNPELTLESIRDGWFHTGDIGEMLPNGVLKIIDRKKNLVKLSQGEYVAVEYLEKVYGTAD 540

Query: 541 IIEDIWVYGDSLKSMLVAVVVPCEEDTKKWAYSNGHAGSFLELCSLVQLQNYILSELKNA 600
           I+EDIWVYG+S KSMLVAVVVP EE+TKKWA  NGH GS  ELCSL  L +Y+LSELK A
Sbjct: 541 IVEDIWVYGNSFKSMLVAVVVPHEENTKKWADLNGHKGSLSELCSLNLLHSYVLSELKAA 600

Query: 601 AERNKLRGFEHIKGVILDPRPFDMERDLVTATLKKKRNKLLIYYQVEIDQLYEKLAPGRR 660
           AE +KLRGFEHIKGVIL+ R F+ E+DLVT TLKK+R+K+L +YQ +ID+LY  L  GR 
Sbjct: 601 AELSKLRGFEHIKGVILEARLFEAEQDLVTPTLKKRRDKMLKHYQAKIDELYANLGEGRH 660

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356505647|ref|XP_003521601.1| PREDICTED: long chain acyl-CoA synthetase 1-like [Glycine max]

 Score = 1080 bits (2794), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 504/656 (76%), Positives = 578/656 (88%)

Query: 1   MKIFAAQVEEGKEGKDGKPSVGPVYRNLLASNGFPSVDSDLNTAWDIFSMSVQKYPGNRM 60
           MK FAA+VEEG+EG +G+ S+GPVYRNLL+ N FP +D DL+TAWDIFSM+V+KYP NRM
Sbjct: 1   MKSFAAKVEEGREGINGELSIGPVYRNLLSKNQFPPLDPDLSTAWDIFSMAVKKYPKNRM 60

Query: 61  LGWRPFVDGKFGPYVWKTYKEVYEEVLQIVSALRASGAEPGCRVGIYGANCPQWVEAMEA 120
           LGWR FVD K GPYVWKTYKEVY+EVL I SALRASGAE G ++GIYGANCPQW+ AMEA
Sbjct: 61  LGWREFVDAKIGPYVWKTYKEVYDEVLHIGSALRASGAELGSKIGIYGANCPQWIVAMEA 120

Query: 121 CNALSLICVPLYDTLGPGAVNFILDHAEIDFVFVQDKKVKELLSPDCRSAQRLRVMVCFT 180
           C A SL+CVPLYDTLGPGAVNFI+DH E+DFVFVQD+KV  LL+PDC+SAQRL+ MV FT
Sbjct: 121 CCAHSLVCVPLYDTLGPGAVNFIIDHGELDFVFVQDRKVIHLLNPDCKSAQRLKAMVSFT 180

Query: 181 SLTAEQKEMAVQTGIKPYSWDEFLHLGKVNEMEILPPQPFNICTIMYTSGTSGDPKGVVL 240
           SLT E+K+ A+  GIKPYSW EFLH+GK N   I  PQP NICTIMYTSGTSGDPKGVVL
Sbjct: 181 SLTEEEKDKAISIGIKPYSWQEFLHMGKENPSNISAPQPNNICTIMYTSGTSGDPKGVVL 240

Query: 241 THETIATFVSGVDLFLDQFEDKMTVDDVYLSFLPLAHILDRVIEEYFFRRGASVGYYHGD 300
           THE IATFV G+DLF++QFEDKMTV+DVYLSFLPLAHILDR IEEYFF +GASVGYYHGD
Sbjct: 241 THENIATFVRGMDLFMEQFEDKMTVEDVYLSFLPLAHILDRTIEEYFFHKGASVGYYHGD 300

Query: 301 LNALRDDLMELKPTLLAGVPRVFEKIHEGIKKALEELRPLRRRIFDALYKYKLAWMNMGY 360
           LNALRDDLMELKPTL AGVPRVFEK+HEGIKKA+EEL P+RRR+F  LYK+KL WMN GY
Sbjct: 301 LNALRDDLMELKPTLFAGVPRVFEKVHEGIKKAVEELNPVRRRVFGMLYKHKLGWMNKGY 360

Query: 361 KQREASPLADLLAFRKVKARLGGRLRLVISGGAPLSTEVEEFLRVTCCAFLVQGYGLTET 420
           K   ASPLADLLAFRKVKARLGGR+RL+ISGGAPLS+EVEEFLRVT CAF+ QGYGLTET
Sbjct: 361 KHCNASPLADLLAFRKVKARLGGRVRLIISGGAPLSSEVEEFLRVTSCAFVCQGYGLTET 420

Query: 421 CGPTTVCFPDEMCMVGTAGPVSVYSELRLEEVPEMGYSPLDDPPCGEVCVRGKTLFSGYY 480
           CG TT+ +PDEMCM+GT GPVSVY+E+RLEEVPEMGY+PL  P CGE+C+RGKT+F+GYY
Sbjct: 421 CGSTTLAYPDEMCMLGTVGPVSVYNEMRLEEVPEMGYNPLGSPSCGEICLRGKTVFTGYY 480

Query: 481 KNPDLTRESIIDGWFHTGDIGQILPNGVVKIIDRKKNLIKISQGEYVALEYLENVYCVAP 540
           KNP+LTRE+I DGWFHTGDI ++ PNGVVKIIDRKKNLIK+SQGEY+ALE+LENVY + P
Sbjct: 481 KNPELTREAIKDGWFHTGDIAEVQPNGVVKIIDRKKNLIKLSQGEYIALEHLENVYGITP 540

Query: 541 IIEDIWVYGDSLKSMLVAVVVPCEEDTKKWAYSNGHAGSFLELCSLVQLQNYILSELKNA 600
           I+ED+WVYG+S KS LVAVVVP EE TKKWA+SNGH   F +LCSL QL+ ++LSELK  
Sbjct: 541 IVEDVWVYGNSFKSALVAVVVPNEEITKKWAFSNGHIAPFSKLCSLDQLKKHVLSELKVT 600

Query: 601 AERNKLRGFEHIKGVILDPRPFDMERDLVTATLKKKRNKLLIYYQVEIDQLYEKLA 656
           AERNKL+GFE+IKGVILDP+PFDMERDLVT+T+KK+RN +L YYQVEID +Y  L+
Sbjct: 601 AERNKLKGFEYIKGVILDPQPFDMERDLVTSTMKKRRNNMLKYYQVEIDDVYRSLS 656

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356572815|ref|XP_003554561.1| PREDICTED: long chain acyl-CoA synthetase 1-like [Glycine max]

 Score = 1074 bits (2777), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 501/655 (76%), Positives = 576/655 (87%)

Query: 1   MKIFAAQVEEGKEGKDGKPSVGPVYRNLLASNGFPSVDSDLNTAWDIFSMSVQKYPGNRM 60
           MK FA +VEEG+EG +G+ S+GPVYRNLL+ N FP +D DL+TAWDIFSM+V+KY  NRM
Sbjct: 1   MKGFAVKVEEGREGTNGELSIGPVYRNLLSKNEFPPLDPDLSTAWDIFSMAVKKYRKNRM 60

Query: 61  LGWRPFVDGKFGPYVWKTYKEVYEEVLQIVSALRASGAEPGCRVGIYGANCPQWVEAMEA 120
           LGWR FVDGK GPYVWKTY+EVY+EVL I SALRASGAEPG R+GIYGANCPQW+ AMEA
Sbjct: 61  LGWREFVDGKIGPYVWKTYEEVYDEVLHIGSALRASGAEPGSRIGIYGANCPQWIVAMEA 120

Query: 121 CNALSLICVPLYDTLGPGAVNFILDHAEIDFVFVQDKKVKELLSPDCRSAQRLRVMVCFT 180
           C A +LICVPLYDTLGPGAVNFI+DH E+DFVFVQDKKV  LL+PDC+SAQRL+ MV FT
Sbjct: 121 CCAHNLICVPLYDTLGPGAVNFIIDHGELDFVFVQDKKVIHLLNPDCKSAQRLKAMVSFT 180

Query: 181 SLTAEQKEMAVQTGIKPYSWDEFLHLGKVNEMEILPPQPFNICTIMYTSGTSGDPKGVVL 240
           SLT E+K+ A+  GIKPYSW+EFLH+GK N   I PPQP +ICTIMYTSGTSGDPKGVVL
Sbjct: 181 SLTEEEKDKAIAIGIKPYSWEEFLHMGKENPSNISPPQPNSICTIMYTSGTSGDPKGVVL 240

Query: 241 THETIATFVSGVDLFLDQFEDKMTVDDVYLSFLPLAHILDRVIEEYFFRRGASVGYYHGD 300
           THE I  FV G+DLF++QFEDKMTV+DVYLSFLPLAHILDR IEEYFF +GASVGYYHGD
Sbjct: 241 THENITVFVRGMDLFMEQFEDKMTVEDVYLSFLPLAHILDRTIEEYFFHKGASVGYYHGD 300

Query: 301 LNALRDDLMELKPTLLAGVPRVFEKIHEGIKKALEELRPLRRRIFDALYKYKLAWMNMGY 360
           LNALRDDLMELKPTL AGVPRVFEK+HEGIKKA+EEL P+RRR+F  LYK+KL WMN GY
Sbjct: 301 LNALRDDLMELKPTLFAGVPRVFEKVHEGIKKAVEELNPVRRRVFGMLYKHKLGWMNKGY 360

Query: 361 KQREASPLADLLAFRKVKARLGGRLRLVISGGAPLSTEVEEFLRVTCCAFLVQGYGLTET 420
           K   ASPLADLLAFRKVKARLGGR+RL+ISGGAPLS+EVEEFLRVT CAF+ QGYGLTET
Sbjct: 361 KHCNASPLADLLAFRKVKARLGGRVRLIISGGAPLSSEVEEFLRVTSCAFVCQGYGLTET 420

Query: 421 CGPTTVCFPDEMCMVGTAGPVSVYSELRLEEVPEMGYSPLDDPPCGEVCVRGKTLFSGYY 480
           CG TT+ +PDEMCM+GT GPVS+Y+E+RLEEVPEMGY+PL  P CGE+C+RGKT+F+GYY
Sbjct: 421 CGSTTLAYPDEMCMLGTVGPVSIYNEMRLEEVPEMGYNPLGSPSCGEICLRGKTVFTGYY 480

Query: 481 KNPDLTRESIIDGWFHTGDIGQILPNGVVKIIDRKKNLIKISQGEYVALEYLENVYCVAP 540
           KNP+LTRE+I DGWFHTGDI ++  NG VKIIDRKKNLIK+SQGEY+ALE+LENVY + P
Sbjct: 481 KNPELTREAIKDGWFHTGDIAEVQLNGAVKIIDRKKNLIKLSQGEYIALEHLENVYGITP 540

Query: 541 IIEDIWVYGDSLKSMLVAVVVPCEEDTKKWAYSNGHAGSFLELCSLVQLQNYILSELKNA 600
           I+ED+WVYG+S KS LVAVVVP EE TKKWA+SNGH   F +LCSL QL+ ++LSELK  
Sbjct: 541 IVEDVWVYGNSFKSALVAVVVPNEETTKKWAFSNGHMAPFSKLCSLDQLKKHVLSELKMT 600

Query: 601 AERNKLRGFEHIKGVILDPRPFDMERDLVTATLKKKRNKLLIYYQVEIDQLYEKL 655
           AERNKL+GFE+IKGVILDP+PFDMERDLVT+T+KK+RN +L YYQVEID+LY  L
Sbjct: 601 AERNKLKGFEYIKGVILDPQPFDMERDLVTSTMKKRRNNMLKYYQVEIDELYRSL 655

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|357511417|ref|XP_003625997.1| Annotation was added to scaffolds in November 2011~Long-chain-fatty-acid-CoA ligase [Medicago truncatula] gi|355501012|gb|AES82215.1| Annotation was added to scaffolds in November 2011~Long-chain-fatty-acid-CoA ligase [Medicago truncatula]

 Score = 1050 bits (2714), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 489/660 (74%), Positives = 571/660 (86%), Gaps = 6/660 (0%)

Query: 1   MKIFAAQVEEGKEGKDGKPSVGPVYRNLLASNGFPSVDSDLNTAWDIFSMSVQKYPGNRM 60
           MK FAA+VEEG+EGK+GK SVGPVYRNLLA + FP  D DL TAWDIFS++ +KYP NRM
Sbjct: 1   MKSFAAKVEEGREGKNGKLSVGPVYRNLLAKDQFPPSDPDLTTAWDIFSVAAKKYPQNRM 60

Query: 61  LGWRPFVDGKFGPYVWKTYKEVYEEVLQIVSALRASGAEPGCRVGIYGANCPQWVEAMEA 120
           LGWR FVDGKFG YVWKTYK+VY+EV+ I SALRASGA+ G R+G+YG+NCPQW+ AMEA
Sbjct: 61  LGWREFVDGKFGSYVWKTYKQVYDEVMHIGSALRASGAQHGSRIGVYGSNCPQWIVAMEA 120

Query: 121 CNALSLICVPLYDTLGPGAVNFILDHAEIDFVFVQDKKVKELLSPDCRSAQRLRVMVCFT 180
           C A SL+CVPLYDTLGPGAVNFI+DHAE+DFVFVQDKKV +LLSPDC+SA RL+ +VCFT
Sbjct: 121 CCAHSLVCVPLYDTLGPGAVNFIIDHAEVDFVFVQDKKVMQLLSPDCKSASRLKAIVCFT 180

Query: 181 SLTAEQKEMAVQTGIKPYSWDEFLHLGKVNEMEILPPQPFNICTIMYTSGTSGDPKGVVL 240
            LT E+K+ A   G+KPYSW+EFL +GK     I PPQ  +ICTIMYTSGTSGDP+GVVL
Sbjct: 181 KLTNEEKDKATSIGVKPYSWEEFLQMGKETPSTISPPQAHDICTIMYTSGTSGDPQGVVL 240

Query: 241 THETIATFVSGVDLFLDQFEDKMTVDDVYLSFLPLAHILDRVIEEYFFRRGASVGYYHG- 299
           THE I  FV G+D+F++QFEDKMTV+DVYLSFLPLAHILDR IEEYFF +GASVGYYHG 
Sbjct: 241 THENITYFVRGMDIFMEQFEDKMTVEDVYLSFLPLAHILDRTIEEYFFHKGASVGYYHGV 300

Query: 300 -----DLNALRDDLMELKPTLLAGVPRVFEKIHEGIKKALEELRPLRRRIFDALYKYKLA 354
                DL ALRDDLMELKPTL AGVPRVFEK++EGIKKA+EEL P+RR +F  LYK KL 
Sbjct: 301 YSIIHDLTALRDDLMELKPTLFAGVPRVFEKVYEGIKKAVEELNPVRRTVFGMLYKRKLG 360

Query: 355 WMNMGYKQREASPLADLLAFRKVKARLGGRLRLVISGGAPLSTEVEEFLRVTCCAFLVQG 414
           WM  GYK   ASP ADLLAFRKVKARLGGR+RL+I+GGAPLS+E+EEFLRVT  AF+ QG
Sbjct: 361 WMKKGYKHCNASPFADLLAFRKVKARLGGRVRLIITGGAPLSSEIEEFLRVTSGAFVCQG 420

Query: 415 YGLTETCGPTTVCFPDEMCMVGTAGPVSVYSELRLEEVPEMGYSPLDDPPCGEVCVRGKT 474
           YGLTETCG TT+ FPDEMCM+GT GPVS+Y+E++LEEVPEMGY+PL +P CGE+C+RGK+
Sbjct: 421 YGLTETCGSTTLAFPDEMCMLGTVGPVSIYNEIQLEEVPEMGYNPLGNPSCGEICLRGKS 480

Query: 475 LFSGYYKNPDLTRESIIDGWFHTGDIGQILPNGVVKIIDRKKNLIKISQGEYVALEYLEN 534
           +FSGY+KNP+LT+ESI+DGWFHTGDIG++ PNGVVKIIDRKKNLIK+SQGEY+ALEYLEN
Sbjct: 481 VFSGYHKNPELTKESIVDGWFHTGDIGEMQPNGVVKIIDRKKNLIKLSQGEYIALEYLEN 540

Query: 535 VYCVAPIIEDIWVYGDSLKSMLVAVVVPCEEDTKKWAYSNGHAGSFLELCSLVQLQNYIL 594
           VY + PI+ED+WVYG+S KS+LVAVVVP EE TKKWAY+NG  GSF ELCSL + + Y+L
Sbjct: 541 VYGITPIVEDVWVYGNSFKSVLVAVVVPNEEITKKWAYTNGFVGSFSELCSLDEFKKYVL 600

Query: 595 SELKNAAERNKLRGFEHIKGVILDPRPFDMERDLVTATLKKKRNKLLIYYQVEIDQLYEK 654
           SELK  AERNKL+GFE IKGVILDP PFDMERDLVTATLKK+RN +L YYQVEID++Y++
Sbjct: 601 SELKLTAERNKLKGFEQIKGVILDPHPFDMERDLVTATLKKRRNNMLKYYQVEIDEVYQR 660

Source: Medicago truncatula

Species: Medicago truncatula

Genus: Medicago

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356534712|ref|XP_003535896.1| PREDICTED: long chain acyl-CoA synthetase 1-like [Glycine max]

 Score = 1045 bits (2702), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 495/656 (75%), Positives = 570/656 (86%)

Query: 1   MKIFAAQVEEGKEGKDGKPSVGPVYRNLLASNGFPSVDSDLNTAWDIFSMSVQKYPGNRM 60
           MK F+ +VEEG+EGK+G  SVGPVYRNLL+ N FP +D D +T WDIF +SV+ +P NRM
Sbjct: 1   MKAFSVKVEEGREGKNGNLSVGPVYRNLLSENEFPPMDPDFSTTWDIFCVSVKNHPNNRM 60

Query: 61  LGWRPFVDGKFGPYVWKTYKEVYEEVLQIVSALRASGAEPGCRVGIYGANCPQWVEAMEA 120
           LG R  VDGK GPYVWKTYKEVY+EVL + SALRASG+EPG ++GIYG+NCP+W+ AME 
Sbjct: 61  LGKRKIVDGKIGPYVWKTYKEVYDEVLHMSSALRASGSEPGTKIGIYGSNCPEWIVAMEV 120

Query: 121 CNALSLICVPLYDTLGPGAVNFILDHAEIDFVFVQDKKVKELLSPDCRSAQRLRVMVCFT 180
           C+A S ICVPLYDTLGPGAVNFI+DHAE+DFVFVQDKKVKELL+P+C+S++RL+ MVCFT
Sbjct: 121 CSAQSFICVPLYDTLGPGAVNFIIDHAEVDFVFVQDKKVKELLNPECKSSKRLKAMVCFT 180

Query: 181 SLTAEQKEMAVQTGIKPYSWDEFLHLGKVNEMEILPPQPFNICTIMYTSGTSGDPKGVVL 240
           +LT E+K  A   GIKPYSW EFLHLGK N     PPQ  +ICTIMYTSGTSGDPKGVVL
Sbjct: 181 TLTEEEKAKATAIGIKPYSWHEFLHLGKENPKSTFPPQAHDICTIMYTSGTSGDPKGVVL 240

Query: 241 THETIATFVSGVDLFLDQFEDKMTVDDVYLSFLPLAHILDRVIEEYFFRRGASVGYYHGD 300
           T+E +   V G+DLF++QFEDKMTVDDVYLSFLPLAHILDR IEEYFFR+GASVGYYHGD
Sbjct: 241 TYENVTALVRGMDLFMEQFEDKMTVDDVYLSFLPLAHILDRTIEEYFFRKGASVGYYHGD 300

Query: 301 LNALRDDLMELKPTLLAGVPRVFEKIHEGIKKALEELRPLRRRIFDALYKYKLAWMNMGY 360
           LNALRDDLMELKPTL AGVPRVFEK++EGIKKA+EEL P+RR +F  LY YKL WM  GY
Sbjct: 301 LNALRDDLMELKPTLFAGVPRVFEKVYEGIKKAVEELNPVRRTVFGMLYNYKLGWMKKGY 360

Query: 361 KQREASPLADLLAFRKVKARLGGRLRLVISGGAPLSTEVEEFLRVTCCAFLVQGYGLTET 420
           K REAS LADLLAFRKVKARLGGR+RL+ISGGA LS EVEEFLRVT CAF+ QGYGLTET
Sbjct: 361 KHREASRLADLLAFRKVKARLGGRVRLIISGGAALSPEVEEFLRVTTCAFVCQGYGLTET 420

Query: 421 CGPTTVCFPDEMCMVGTAGPVSVYSELRLEEVPEMGYSPLDDPPCGEVCVRGKTLFSGYY 480
           CGPTT+ FPDEMCM+GT G VS+Y+E++LEEVPEMGY+PL+ PPCGE+CVRGKT+F+ YY
Sbjct: 421 CGPTTLGFPDEMCMLGTVGAVSIYNEIKLEEVPEMGYNPLETPPCGEICVRGKTVFTAYY 480

Query: 481 KNPDLTRESIIDGWFHTGDIGQILPNGVVKIIDRKKNLIKISQGEYVALEYLENVYCVAP 540
           KNP+LT+E+I DGWFHTGDIG++LPNGV+KIIDRKKNL+K+SQGEY+ALE+LENVY + P
Sbjct: 481 KNPELTKEAIKDGWFHTGDIGEMLPNGVIKIIDRKKNLVKLSQGEYIALEHLENVYGITP 540

Query: 541 IIEDIWVYGDSLKSMLVAVVVPCEEDTKKWAYSNGHAGSFLELCSLVQLQNYILSELKNA 600
           I+EDIWVYG+S KSMLVAVVVP EE   KWAYSNGH  SF +LCSL QL+ Y+LSELK  
Sbjct: 541 IVEDIWVYGNSFKSMLVAVVVPNEEFANKWAYSNGHIASFPKLCSLDQLKKYVLSELKLT 600

Query: 601 AERNKLRGFEHIKGVILDPRPFDMERDLVTATLKKKRNKLLIYYQVEIDQLYEKLA 656
           AERNKLRGFEHIKGVIL+P  FDMERDLVTATLKKKRNKLL YYQVEID++Y+ L 
Sbjct: 601 AERNKLRGFEHIKGVILEPHEFDMERDLVTATLKKKRNKLLKYYQVEIDEIYQSLT 656

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356499773|ref|XP_003518711.1| PREDICTED: long chain acyl-CoA synthetase 1-like [Glycine max]

 Score = 1043 bits (2697), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 497/655 (75%), Positives = 570/655 (87%)

Query: 1   MKIFAAQVEEGKEGKDGKPSVGPVYRNLLASNGFPSVDSDLNTAWDIFSMSVQKYPGNRM 60
           MK F+ +VEEG+EGK+G  SVGPVYRNLL+ N FP +D D +T WDIF +SV+ +P NRM
Sbjct: 1   MKAFSVKVEEGREGKNGNLSVGPVYRNLLSENEFPPMDPDFSTTWDIFCVSVKNHPNNRM 60

Query: 61  LGWRPFVDGKFGPYVWKTYKEVYEEVLQIVSALRASGAEPGCRVGIYGANCPQWVEAMEA 120
           LG R  VD K GPYVWKTYKEVY+EVL + SALRASGAEPG ++GIYG+NCP+W+ AMEA
Sbjct: 61  LGKRKIVDEKIGPYVWKTYKEVYDEVLHMSSALRASGAEPGTKIGIYGSNCPEWIVAMEA 120

Query: 121 CNALSLICVPLYDTLGPGAVNFILDHAEIDFVFVQDKKVKELLSPDCRSAQRLRVMVCFT 180
           C+A S +CVPLYDTLGPGAVNFI+DHAE+DFVFVQDKKVKELL+P+C+S++RL+ MVCFT
Sbjct: 121 CSAQSFVCVPLYDTLGPGAVNFIIDHAEVDFVFVQDKKVKELLNPECKSSKRLKAMVCFT 180

Query: 181 SLTAEQKEMAVQTGIKPYSWDEFLHLGKVNEMEILPPQPFNICTIMYTSGTSGDPKGVVL 240
           SLT E+K  A   GIKPYSW +FLHLGK N     PPQ  +ICTIMYTSGTSGDPKGVVL
Sbjct: 181 SLTEEEKAKATAIGIKPYSWHDFLHLGKENPKSTFPPQAHDICTIMYTSGTSGDPKGVVL 240

Query: 241 THETIATFVSGVDLFLDQFEDKMTVDDVYLSFLPLAHILDRVIEEYFFRRGASVGYYHGD 300
           T+E +   V G+DLF++QFEDKMTVDDVYLSFLPLAHILDR IEEYFFR+GASVGYYHGD
Sbjct: 241 TNENVTALVRGMDLFMEQFEDKMTVDDVYLSFLPLAHILDRTIEEYFFRKGASVGYYHGD 300

Query: 301 LNALRDDLMELKPTLLAGVPRVFEKIHEGIKKALEELRPLRRRIFDALYKYKLAWMNMGY 360
           LNALRDDLMELKPTL AGVPRVFEK++EGIKKA+EEL P+RR +F  LY YKL WM  GY
Sbjct: 301 LNALRDDLMELKPTLFAGVPRVFEKVYEGIKKAVEELNPVRRTVFGMLYNYKLGWMKKGY 360

Query: 361 KQREASPLADLLAFRKVKARLGGRLRLVISGGAPLSTEVEEFLRVTCCAFLVQGYGLTET 420
           K R+AS LADLLAFRKVKARLGGR+RL+ISGGA LS EVEEFLRVT CAF+ QGYGLTET
Sbjct: 361 KHRQASRLADLLAFRKVKARLGGRVRLIISGGAALSPEVEEFLRVTTCAFVCQGYGLTET 420

Query: 421 CGPTTVCFPDEMCMVGTAGPVSVYSELRLEEVPEMGYSPLDDPPCGEVCVRGKTLFSGYY 480
           CGPTT+ FPDEMCM+GT G VS+Y+E+ LEEVPEMGY+PL+ PPCGE+CVRGKT+F+GYY
Sbjct: 421 CGPTTLGFPDEMCMLGTVGAVSIYNEIMLEEVPEMGYNPLETPPCGEICVRGKTVFTGYY 480

Query: 481 KNPDLTRESIIDGWFHTGDIGQILPNGVVKIIDRKKNLIKISQGEYVALEYLENVYCVAP 540
           KNP+LT+E+I DGWFHTGDIG++LPNGV+KIIDRKKNL+K+SQGEY+ALE+LENVY V P
Sbjct: 481 KNPELTKEAIKDGWFHTGDIGEMLPNGVIKIIDRKKNLVKLSQGEYIALEHLENVYGVTP 540

Query: 541 IIEDIWVYGDSLKSMLVAVVVPCEEDTKKWAYSNGHAGSFLELCSLVQLQNYILSELKNA 600
           I+EDIWVYG+S KSMLVAVVVP EE   KWAYSNGH  SF  LCSL QL+ Y+LSELK  
Sbjct: 541 IVEDIWVYGNSFKSMLVAVVVPNEEVANKWAYSNGHIASFPILCSLDQLKKYVLSELKLT 600

Query: 601 AERNKLRGFEHIKGVILDPRPFDMERDLVTATLKKKRNKLLIYYQVEIDQLYEKL 655
           AERNKLRGFEHIKGVIL+P+ FDMERDLVTATLKKKRNKLL YYQVEID+LY+ L
Sbjct: 601 AERNKLRGFEHIKGVILEPQEFDMERDLVTATLKKKRNKLLKYYQVEIDELYQSL 655

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449518374|ref|XP_004166217.1| PREDICTED: long chain acyl-CoA synthetase 1-like [Cucumis sativus]

 Score = 1023 bits (2644), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 486/656 (74%), Positives = 564/656 (85%), Gaps = 1/656 (0%)

Query: 1   MKIFAAQVEEGKEGKDGKPSVGPVYRNLLASNGFPSVDSDLNTAWDIFSMSVQKYPGNRM 60
           MK F+ +VEEG+EGKDGKPSVGPVYRN+LA   FPS   DL+T+WD+FS+S  KY   RM
Sbjct: 1   MKRFSVKVEEGREGKDGKPSVGPVYRNVLAEKEFPSPYEDLSTSWDLFSVSANKYAERRM 60

Query: 61  LGWRPFVDGKFGPYVWKTYKEVYEEVLQIVSALRASGAEPGCRVGIYGANCPQWVEAMEA 120
           LGWR FVDGK GPY+WKTYKEVY +VL I SALRA GAEPG R+GIYGANCPQW+ AMEA
Sbjct: 61  LGWRKFVDGKPGPYIWKTYKEVYGDVLNIGSALRAIGAEPGSRIGIYGANCPQWIVAMEA 120

Query: 121 CNALSLICVPLYDTLGPGAVNFILDHAEIDFVFVQDKKVKELLSPDCRSAQRLRVMVCFT 180
           CNA SLICVPLYDTLG GAVNFI+DHAEID VF+QDKK KELL+  C   +RL+V +CFT
Sbjct: 121 CNAHSLICVPLYDTLGHGAVNFIIDHAEIDIVFIQDKKAKELLNSGCTIPERLKVFICFT 180

Query: 181 SLTAEQKEMAVQTGIKPYSWDEFLHL-GKVNEMEILPPQPFNICTIMYTSGTSGDPKGVV 239
           SL  E+K  A   G+KPYSWDEFL L  K N  EI PP+P +ICTIMYTSGTSG PKGVV
Sbjct: 181 SLKEEEKISATNNGMKPYSWDEFLRLVRKENPSEISPPRPLDICTIMYTSGTSGTPKGVV 240

Query: 240 LTHETIATFVSGVDLFLDQFEDKMTVDDVYLSFLPLAHILDRVIEEYFFRRGASVGYYHG 299
           LT ETI TF+ GVD+ ++QFEDKMT DDVYLSFLPLAHILDR +EEYFFR+GASVGYYHG
Sbjct: 241 LTQETITTFIRGVDIQMEQFEDKMTEDDVYLSFLPLAHILDRTVEEYFFRKGASVGYYHG 300

Query: 300 DLNALRDDLMELKPTLLAGVPRVFEKIHEGIKKALEELRPLRRRIFDALYKYKLAWMNMG 359
           DL+A++DDLMELKPTLL GVPRVFEKIHEGIK+A++ L P+RR+ FD LYKYKL+WMN G
Sbjct: 301 DLDAIKDDLMELKPTLLVGVPRVFEKIHEGIKQAVQVLNPVRRKAFDLLYKYKLSWMNSG 360

Query: 360 YKQREASPLADLLAFRKVKARLGGRLRLVISGGAPLSTEVEEFLRVTCCAFLVQGYGLTE 419
           YKQ++ASPLADLLAFRKVKARLGGRLRL+ISGGA LSTEVEEFLRVTCCAF VQGYGLTE
Sbjct: 361 YKQKDASPLADLLAFRKVKARLGGRLRLIISGGAALSTEVEEFLRVTCCAFFVQGYGLTE 420

Query: 420 TCGPTTVCFPDEMCMVGTAGPVSVYSELRLEEVPEMGYSPLDDPPCGEVCVRGKTLFSGY 479
           TCGPTT+ FPDEMCM+G  G V++++EL LEEVP+MGY+PL D PCGE+CVRGKT+F+ Y
Sbjct: 421 TCGPTTIGFPDEMCMLGNVGGVTLFNELCLEEVPDMGYNPLGDRPCGEICVRGKTVFTEY 480

Query: 480 YKNPDLTRESIIDGWFHTGDIGQILPNGVVKIIDRKKNLIKISQGEYVALEYLENVYCVA 539
           YK+P+LT+ESI DGWFHTGDIG++ PNGVVKIIDRKKNLIK+SQGEY+ALEYLENVY + 
Sbjct: 481 YKDPELTKESIKDGWFHTGDIGEMFPNGVVKIIDRKKNLIKLSQGEYIALEYLENVYSIT 540

Query: 540 PIIEDIWVYGDSLKSMLVAVVVPCEEDTKKWAYSNGHAGSFLELCSLVQLQNYILSELKN 599
           PI+EDIW+YG+S KSMLVAVVV  EE+TKKWA SNG   SF ELC L QL++Y+LSEL +
Sbjct: 541 PIVEDIWIYGNSFKSMLVAVVVLHEENTKKWANSNGFLCSFSELCPLEQLRHYVLSELTS 600

Query: 600 AAERNKLRGFEHIKGVILDPRPFDMERDLVTATLKKKRNKLLIYYQVEIDQLYEKL 655
            AERNKL+ FE+IKGV+L+ RPFD+E+DLVTATLKKKRN LL +Y+V+I+  Y+ L
Sbjct: 601 TAERNKLKRFEYIKGVVLELRPFDIEKDLVTATLKKKRNNLLKHYEVQINAEYKNL 656

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|357442179|ref|XP_003591367.1| Annotation was added to scaffolds in November 2011~Long chain fatty acid-CoA ligase [Medicago truncatula] gi|355480415|gb|AES61618.1| Annotation was added to scaffolds in November 2011~Long chain fatty acid-CoA ligase [Medicago truncatula]

 Score =  988 bits (2553), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 467/660 (70%), Positives = 554/660 (83%), Gaps = 6/660 (0%)

Query: 1   MKIFAAQVEEGKEGKDGKPSVGPVYRNLLASNGFPSVDSDLNTAWDIFSMSVQKYPGNRM 60
           MK F+ +VEEGKEGK+G  SVGPVYRNLL+ N FP +D D  +AWDIFS SV+K+P NRM
Sbjct: 23  MKSFSVKVEEGKEGKNGMLSVGPVYRNLLSQNEFPPMDPDFTSAWDIFSTSVKKHPQNRM 82

Query: 61  LGWRPFVDGKFGPYVWKTYKEVYEEVLQIVSALRASGAEPGCRVGIYGANCPQWVEAMEA 120
           LGWR  VDGK GPYVWKTYKE Y+EVLQI SAL+A GA+ G ++GIYG+NCPQW+ AMEA
Sbjct: 83  LGWRKIVDGKIGPYVWKTYKEAYDEVLQIASALKACGAKSGSKIGIYGSNCPQWIIAMEA 142

Query: 121 CNALSLICVPLYDTLGPGAVNFILDHAEIDFVFVQDKKVKELLSPDCRSAQRLRVMVCFT 180
           C+A + ICVPLYDTLG GA+NFI+DHAEID+VFVQDKKVKELL+ DC+S++RL+ +V FT
Sbjct: 143 CSAQNFICVPLYDTLGSGAINFIIDHAEIDYVFVQDKKVKELLNADCKSSKRLKAIVGFT 202

Query: 181 SLTAEQKEMAVQTGIKPYSWDEFLHLGKVNEMEILPPQPFNICTIMYTSGTSGDPKGVVL 240
           SLT E+K+ A   GIKPY+W++F+  GK N   I PP   +ICTIMYTSGTSGDPKGVVL
Sbjct: 203 SLTEEEKDEATNAGIKPYTWNQFVQKGKENPSSINPPLAHDICTIMYTSGTSGDPKGVVL 262

Query: 241 THETIATFVSGVDLFLDQFEDK-MTVDDVYLSFLPLAHILDRVIEEYFFRRGASVGYYHG 299
           THE +   V G+DLF++QFEDK MTVDDVYLSFLPLAHILDR IEEYFFR GASVGYYHG
Sbjct: 263 THENVLALVRGMDLFMEQFEDKVMTVDDVYLSFLPLAHILDRCIEEYFFRNGASVGYYHG 322

Query: 300 DLNALRDDLMELKPTLLAGVPRVFEKIHEGIKKALEELRPLRRRIFDALYK--YKLAWMN 357
           DLNAL +DL ELKPTL AGVPRVFEK++EG+    E     +    ++ +     L WMN
Sbjct: 323 DLNALLEDLSELKPTLFAGVPRVFEKVYEGMVTYQESSGTTKSSEENSFWHALQLLGWMN 382

Query: 358 MGYKQREASPLADLLAFRK-VKARLGGRLRLVISGGAPLSTEVEEFLRVTCCAFLVQGYG 416
            GY QREAS LADLLAFRK VKARLGGR+RL+ISGGA LS+E+EEFLRVT CAF+ QGYG
Sbjct: 383 KGYTQREASRLADLLAFRKVVKARLGGRVRLIISGGAALSSEIEEFLRVTTCAFVCQGYG 442

Query: 417 LTETCGPTTVCFPDEMCMVGTAGPVSVYSELRLEEVPEMGYSPLDDPPCGEVCVRGKTLF 476
           LTETCGPTT+ FPDEMCM+G  G V+V++ELRLEEVP+MGY+PL  PPCGE+CVRGK++F
Sbjct: 443 LTETCGPTTLTFPDEMCMLGNVGVVTVFNELRLEEVPDMGYNPLGTPPCGEICVRGKSVF 502

Query: 477 SGYYKNPDLTRESIIDGWFHTGDIGQILPNGVVKIIDRKKNLIKISQGEYVALEYLENVY 536
           +GY+KNP+LT+E+IIDGWFHTGDIG++LPNG+++IIDRKKNL+K+SQGEY+ALEYLENVY
Sbjct: 503 TGYHKNPELTKEAIIDGWFHTGDIGEMLPNGIIRIIDRKKNLVKLSQGEYIALEYLENVY 562

Query: 537 CVAPIIEDIWVYGDSLKSMLVAVVVPCEEDTKKWAYSNGHAGSFLELCSLVQLQNYILSE 596
            + PI+EDIWVYG+S KSMLVAVVVP E+ T KWAY+NGH  SF +LCSL QL+ Y+LSE
Sbjct: 563 TITPIVEDIWVYGNSFKSMLVAVVVPNEDVTNKWAYANGHISSFSKLCSLDQLKKYVLSE 622

Query: 597 LKNAAERNKLRGFEHIKGVILDPRPFDMERDLVTATLKKKRNKLLIYYQVEIDQLYEKLA 656
           LK+ A RNK  GFEHIKGVILDP PFDMERDLVTATLKKKRN +L YY+V+ID+LY+ L 
Sbjct: 623 LKSTAVRNK--GFEHIKGVILDPLPFDMERDLVTATLKKKRNNMLKYYKVDIDELYKSLT 680

Source: Medicago truncatula

Species: Medicago truncatula

Genus: Medicago

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	660
TAIR|locus:2065195	660	LACS1 "AT2G47240" [Arabidopsis	0.993	0.993	0.693	2.1e-258
TAIR|locus:2138141	666	LACS4 "long-chain acyl-CoA syn	0.990	0.981	0.509	1e-185
TAIR|locus:2136148	666	AT4G11030 [Arabidopsis thalian	0.996	0.987	0.503	2.3e-181
TAIR|locus:2014265	665	LACS3 "long-chain acyl-CoA syn	0.986	0.978	0.506	9e-180
TAIR|locus:2010177	665	LACS2 "long-chain acyl-CoA syn	0.980	0.972	0.471	3.5e-162
TAIR|locus:2083013	701	LACS6 "AT3G05970" [Arabidopsis	0.918	0.864	0.411	2.2e-114
TAIR|locus:2143661	700	LACS7 "AT5G27600" [Arabidopsis	0.925	0.872	0.390	1e-109
DICTYBASE|DDB_G0269474	673	fcsB "fatty acyl-CoA synthetas	0.968	0.949	0.353	4.9e-108
DICTYBASE|DDB_G0269242	667	fcsA "long-chain-fatty-acid-Co	0.910	0.901	0.378	1.6e-104
FB|FBgn0036821	704	CG3961 [Drosophila melanogaste	0.924	0.866	0.362	1.6e-104

TAIR|locus:2065195 LACS1 "AT2G47240" [Arabidopsis thaliana (taxid:3702)]

 Score = 2487 (880.5 bits), Expect = 2.1e-258, P = 2.1e-258
 Identities = 455/656 (69%), Positives = 549/656 (83%)

Query:     1 MKIFAAQVEEGKEGKDGKPSVGPVYRNLLASNGFPSVDSDLNTAWDIFSMSVQKYPGNRM 60
             MK FAA+VEEG +G DGKPSVGPVYRNLL+  GFP +DS++ TAWDIFS SV+K+P N M
Sbjct:     1 MKSFAAKVEEGVKGIDGKPSVGPVYRNLLSEKGFPPIDSEITTAWDIFSKSVEKFPDNNM 60

Query:    61 LGWRPFVDGKFGPYVWKTYKEVYEEVLQIVSALRASGAEPGCRVGIYGANCPQWVEAMEA 120
             LGWR  VD K GPY+WKTYKEVYEEVLQI SALRA+GAEPG RVGIYG NCPQW+ AMEA
Sbjct:    61 LGWRRIVDEKVGPYMWKTYKEVYEEVLQIGSALRAAGAEPGSRVGIYGVNCPQWIIAMEA 120

Query:   121 CNALSLICVPLYDTLGPGAVNFILDHAEIDFVFVQDKKVKELLSPDCRSAQRLRVMVCFT 180
             C A +LICVPLYDTLG GAV++I++HAEIDFVFVQD K+K LL PDC+ A+RL+ +V FT
Sbjct:   121 CAAHTLICVPLYDTLGSGAVDYIVEHAEIDFVFVQDTKIKGLLEPDCKCAKRLKAIVSFT 180

Query:   181 SLTAEQKEMAVQTGIKPYSWDEFLHLGKVNEMEILPPQPFNICTIMYTSGTSGDPKGVVL 240
             +++ E    A + G+K YSW +FLH+G+    +  PP+ FNICTIMYTSGTSGDPKGVVL
Sbjct:   181 NVSDELSHKASEIGVKTYSWIDFLHMGREKPEDTNPPKAFNICTIMYTSGTSGDPKGVVL 240

Query:   241 THETIATFVSGVDLFLDQFEDKMTVDDVYLSFLPLAHILDRVIEEYFFRRGASVGYYHGD 300
             TH+ +ATFV G+DL++DQFEDKMT DDVYLSFLPLAHILDR+ EEYFFR+GASVGYYHG+
Sbjct:   241 THQAVATFVVGMDLYMDQFEDKMTHDDVYLSFLPLAHILDRMNEEYFFRKGASVGYYHGN 300

Query:   301 LNALRDDLMELKPTLLAGVPRVFEKIHEGIKKALEELRPLRRRIFDALYKYKLAWMNMGY 360
             LN LRDD+ ELKPT LAGVPRVFE+IHEGI+KAL+EL P RR IF+ALYK+KLAW+N GY
Sbjct:   301 LNVLRDDIQELKPTYLAGVPRVFERIHEGIQKALQELNPRRRFIFNALYKHKLAWLNRGY 360

Query:   361 KQREASPLADLLAFRKVKARLGGRLRLVISGGAPLSTEVEEFLRVTCCAFLVQGYGLTET 420
                +ASP+AD +AFRK++ +LGGR+RL++SGGAPLS E+EEFLRVTCC F+VQGYGLTET
Sbjct:   361 SHSKASPMADFIAFRKIRDKLGGRIRLLVSGGAPLSPEIEEFLRVTCCCFVVQGYGLTET 420

Query:   421 CGPTTVCFPDEMCMVGTAGPVSVYSELRLEEVPEMGYSPLDDPPCGEVCVRGKTLFSGYY 480
              G T + FPDEMCM+GT G  +VY+E+RLEEV EMGY PL + P GE+C+RG+ +FSGYY
Sbjct:   421 LGGTALGFPDEMCMLGTVGIPAVYNEIRLEEVSEMGYDPLGENPAGEICIRGQCMFSGYY 480

Query:   481 KNPDLTRESIIDGWFHTGDIGQILPNGVVKIIDRKKNLIKISQGEYVALEYLENVYCVAP 540
             KNP+LT E + DGWFHTGDIG+ILPNGV+KIIDRKKNLIK+SQGEYVALE+LEN++    
Sbjct:   481 KNPELTEEVMKDGWFHTGDIGEILPNGVLKIIDRKKNLIKLSQGEYVALEHLENIFGQNS 540

Query:   541 IIEDIWVYGDSLKSMLVAVVVPCEEDTKKWAYSNGHAGSFLELCSLVQLQNYILSELKNA 600
             +++DIWVYGDS KSMLVAVVVP  E   +WA   G    F ELCS  +L+ +I+SELK+ 
Sbjct:   541 VVQDIWVYGDSFKSMLVAVVVPNPETVNRWAKDLGFTKPFEELCSFPELKEHIISELKST 600

Query:   601 AERNKLRGFEHIKGVILDPRPFDMERDLVTATLKKKRNKLLIYYQVEIDQLYEKLA 656
             AE+NKLR FE+IK V ++ +PFD+ERDLVTATLK +RN LL YYQV+ID++Y KLA
Sbjct:   601 AEKNKLRKFEYIKAVTVETKPFDVERDLVTATLKNRRNNLLKYYQVQIDEMYRKLA 656

GO:0001676 "long-chain fatty acid metabolic process" evidence=ISS;IDA

GO:0003824 "catalytic activity" evidence=IEA

GO:0004467 "long-chain fatty acid-CoA ligase activity" evidence=ISS;IDA

GO:0005634 "nucleus" evidence=ISM

GO:0006633 "fatty acid biosynthetic process" evidence=ISS

GO:0006631 "fatty acid metabolic process" evidence=TAS

GO:0010025 "wax biosynthetic process" evidence=IMP

GO:0010143 "cutin biosynthetic process" evidence=IMP

GO:0031957 "very long-chain fatty acid-CoA ligase activity" evidence=IDA

GO:0005783 "endoplasmic reticulum" evidence=IDA

GO:0009627 "systemic acquired resistance" evidence=RCA

GO:0010103 "stomatal complex morphogenesis" evidence=RCA

GO:0034976 "response to endoplasmic reticulum stress" evidence=RCA

TAIR|locus:2138141 LACS4 "long-chain acyl-CoA synthetase 4" [Arabidopsis thaliana (taxid:3702)]

 Score = 1801 (639.0 bits), Expect = 1.0e-185, P = 1.0e-185
 Identities = 333/654 (50%), Positives = 459/654 (70%)

Query:     2 KIFAAQVEEGKEGKDGKPSVGPVYRNLLASNGFPSVDSDLNTAWDIFSMSVQKYPGNRML 61
             K +  QVEEGKEG DG+PSVGPVYR++ A +GFP     +++ WD+F MSV+KYP N ML
Sbjct:     5 KKYIFQVEEGKEGSDGRPSVGPVYRSIFAKDGFPDPIEGMDSCWDVFRMSVEKYPNNPML 64

Query:    62 GWRPFVDGKFGPYVWKTYKEVYEEVLQIVSALRASGAEPGCRVGIYGANCPQWVEAMEAC 121
             G R  VDGK G YVW+TY+EVY+ V+++ ++LR+ G +   + GIYGAN P+W+ +MEAC
Sbjct:    65 GRREIVDGKPGKYVWQTYQEVYDIVMKLGNSLRSVGVKDEAKCGIYGANSPEWIISMEAC 124

Query:   122 NALSLICVPLYDTLGPGAVNFILDHAEIDFVFVQDKKVKELLSPDCRSAQRLRVMVCFTS 181
             NA  L CVPLYDTLG  AV FI+ H+E+  VFV++KK+ EL      S + ++ +V F  
Sbjct:   125 NAHGLYCVPLYDTLGADAVEFIISHSEVSIVFVEEKKISELFKTCPNSTEYMKTVVSFGG 184

Query:   182 LTAEQKEMAVQTGIKPYSWDEFLHLGKVNEMEILPPQPFNICTIMYTSGTSGDPKGVVLT 241
             ++ EQKE A   G+  Y+WDEFL LG+  + ++   +  +ICTIMYTSGT+GDPKGV+++
Sbjct:   185 VSREQKEEAETFGLVIYAWDEFLKLGEGKQYDLPIKKKSDICTIMYTSGTTGDPKGVMIS 244

Query:   242 HETIATFVSGVDLFLDQFEDKMTVDDVYLSFLPLAHILDRVIEEYFFRRGASVGYYHGDL 301
             +E+I T ++GV   L    + +TV DVYLS+LPLAHI DRVIEE F + GA++G++ GD+
Sbjct:   245 NESIVTLIAGVIRLLKSANEALTVKDVYLSYLPLAHIFDRVIEECFIQHGAAIGFWRGDV 304

Query:   302 NALRDDLMELKPTLLAGVPRVFEKIHEGIKKALEELRPLRRRIFDALYKYKLAWMNMGYK 361
               L +DL ELKPT+   VPRV ++++ G++K L +   L++ IFD+ + YK  +M  G  
Sbjct:   305 KLLIEDLAELKPTIFCAVPRVLDRVYSGLQKKLSDGGFLKKFIFDSAFSYKFGYMKKGQS 364

Query:   362 QREASPLADLLAFRKVKARLGGRLRLVISGGAPLSTEVEEFLRVTCCAFLVQGYGLTETC 421
               EASPL D L F KVK  LGG +R+++SG APL++ VE FLRV  C  ++QGYGLTE+C
Sbjct:   365 HVEASPLFDKLVFSKVKQGLGGNVRIILSGAAPLASHVESFLRVVACCHVLQGYGLTESC 424

Query:   422 GPTTVCFPDEMCMVGTAGPVSVYSELRLEEVPEMGYSPLDDPPCGEVCVRGKTLFSGYYK 481
               T V  PDE+ M+GT GP     ++RLE VPEM Y  L     GE+C+RGKTLFSGYYK
Sbjct:   425 AGTFVSLPDELGMLGTVGPPVPNVDIRLESVPEMEYDALASTARGEICIRGKTLFSGYYK 484

Query:   482 NPDLTRESIIDGWFHTGDIGQILPNGVVKIIDRKKNLIKISQGEYVALEYLENVYCVAPI 541
               DLT+E +IDGW HTGD+G+  P+G +KIIDRKKN+ K+SQGEYVA+E +EN+Y     
Sbjct:   485 REDLTKEVLIDGWLHTGDVGEWQPDGSMKIIDRKKNIFKLSQGEYVAVENIENIYGEVQA 544

Query:   542 IEDIWVYGDSLKSMLVAVVVPCEEDTKKWAYSNGHAGSFLELCSLVQLQNYILSELKNAA 601
             ++ +WVYG+S +S L+A+  P +   ++WA  NG +G +  LC   + + +IL EL   A
Sbjct:   545 VDSVWVYGNSFESFLIAIANPNQHILERWAAENGVSGDYDALCQNEKAKEFILGELVKMA 604

Query:   602 ERNKLRGFEHIKGVILDPRPFDMERDLVTATLKKKRNKLLIYYQVEIDQLYEKL 655
             +  K++GFE IK + LDP PFDMERDL+T T KKKR +LL YYQ  ID++Y+ +
Sbjct:   605 KEKKMKGFEIIKAIHLDPVPFDMERDLLTPTFKKKRPQLLKYYQSVIDEMYKTI 658

GO:0003824 "catalytic activity" evidence=IEA

GO:0005634 "nucleus" evidence=ISM

GO:0001676 "long-chain fatty acid metabolic process" evidence=RCA;IDA

GO:0004467 "long-chain fatty acid-CoA ligase activity" evidence=IDA

GO:0006631 "fatty acid metabolic process" evidence=TAS

GO:0005886 "plasma membrane" evidence=IDA

GO:0005829 "cytosol" evidence=RCA

GO:0005794 "Golgi apparatus" evidence=IDA

GO:0002213 "defense response to insect" evidence=RCA

GO:0006633 "fatty acid biosynthetic process" evidence=RCA;TAS

GO:0009611 "response to wounding" evidence=RCA

GO:0009805 "coumarin biosynthetic process" evidence=RCA

TAIR|locus:2136148 AT4G11030 [Arabidopsis thaliana (taxid:3702)]

 Score = 1760 (624.6 bits), Expect = 2.3e-181, P = 2.3e-181
 Identities = 333/662 (50%), Positives = 447/662 (67%)

Query:     2 KIFAAQVEEGKEGKDGKPSVGPVYRNLLASNGFPSVDSDLNTAWDIFSMSVQKYPGNRML 61
             K F  +VE  KE  DG PSVGPVYR+  A NGFP+    + + WDIF  +V+KYP NRML
Sbjct:     5 KRFIFEVEAAKEATDGNPSVGPVYRSTFAQNGFPNPIDGIQSCWDIFRTAVEKYPNNRML 64

Query:    62 GWRPFVDGKFGPYVWKTYKEVYEEVLQIVSALRASGAEPGCRVGIYGANCPQWVEAMEAC 121
             G R   +GK G YVWKTYKEVY+ V+++ ++LR+ G + G + GIYG NC +W+ +MEAC
Sbjct:    65 GRREISNGKAGKYVWKTYKEVYDIVIKLGNSLRSCGIKEGEKCGIYGINCCEWIISMEAC 124

Query:   122 NALSLICVPLYDTLGPGAVNFILDHAEIDFVFVQDKKVKELLSPDCRSAQRLRVMVCFTS 181
             NA  L CVPLYDTLG GAV FI+ HAE+   FV++KK+ EL      S + ++ +V F  
Sbjct:   125 NAHGLYCVPLYDTLGAGAVEFIISHAEVSIAFVEEKKIPELFKTCPNSTKYMKTVVSFGG 184

Query:   182 LTAEQKEMAVQTGIKPYSWDEFLHLGKVNEMEILPPQPFNICTIMYTSGTSGDPKGVVLT 241
             +  EQKE A + G+  +SWDEFL LG+  + E+   +P +ICTIMYTSGT+GDPKGV+++
Sbjct:   185 VKPEQKEEAEKLGLVIHSWDEFLKLGEGKQYELPIKKPSDICTIMYTSGTTGDPKGVMIS 244

Query:   242 HETIATFVSGVDLFLDQFEDKMTVDDVYLSFLPLAHILDRVIEEYFFRRGASVGYYHGDL 301
             +E+I T  +GV  FL      ++  DVY+S+LPLAH+ DR IEE   + G S+G++ GD+
Sbjct:   245 NESIVTITTGVMHFLGNVNASLSEKDVYISYLPLAHVFDRAIEECIIQVGGSIGFWRGDV 304

Query:   302 NALRDDLMELKPTLLAGVPRVFEKIHEGIKKALEELRPLRRRIFDALYKYKLAWMNMGYK 361
               L +DL ELKP++   VPRV ++++ G+++ L      ++++FD  + YK   M  G  
Sbjct:   305 KLLIEDLGELKPSIFCAVPRVLDRVYTGLQQKLSGGGFFKKKVFDVAFSYKFGNMKKGQS 364

Query:   362 QREASPLADLLAFRKVKARLGGRLRLVISGGAPLSTEVEEFLRVTCCAFLVQGYGLTETC 421
                ASP  D L F KVK  LGG +R+++SG APL++ +E FLRV  C  ++QGYGLTE+C
Sbjct:   365 HVAASPFCDKLVFNKVKQGLGGNVRIILSGAAPLASHIESFLRVVACCNVLQGYGLTESC 424

Query:   422 GPTTVCFPDEMCMVGTAGPVSVYSELRLEEVPEMGYSPLDDPPCGEVCVRGKTLFSGYYK 481
               T   FPDE+ M+GT GP     ++RLE VPEM Y  L   P GE+C+RGKTLFSGYYK
Sbjct:   425 AGTFATFPDELDMLGTVGPPVPNVDIRLESVPEMNYDALGSTPRGEICIRGKTLFSGYYK 484

Query:   482 NPDLTRESIIDGWFHTGDIGQILPNGVVKIIDRKKNLIKISQGEYVALEYLENVYCVAPI 541
               DLT+E  IDGW HTGD+G+  PNG +KIIDRKKN+ K++QGEYVA+E LENVY    +
Sbjct:   485 REDLTKEVFIDGWLHTGDVGEWQPNGSMKIIDRKKNIFKLAQGEYVAVENLENVYSQVEV 544

Query:   542 IEDIWVYGDSLKSMLVAVVVPCEEDTKKWAYSNGHAGSFLELCSLVQLQNYILSELKNAA 601
             IE IWVYG+S +S LVA+  P ++  ++WA  NG  G F  +C   + + +IL EL   A
Sbjct:   545 IESIWVYGNSFESFLVAIANPAQQTLERWAVENGVNGDFNSICQNAKAKAFILGELVKTA 604

Query:   602 ERNKLRGFEHIKGVILDPRPFDMERDLVTATLKKKRNKLLIYYQVEIDQLY----EKLAP 657
             + NKL+GFE IK V L+P  FDMERDL+T T KKKR +LL YYQ  I ++Y    E LA 
Sbjct:   605 KENKLKGFEIIKDVHLEPVAFDMERDLLTPTYKKKRPQLLKYYQNVIHEMYKTTKESLAS 664

Query:   658 GR 659
             G+
Sbjct:   665 GQ 666

GO:0003824 "catalytic activity" evidence=IEA

GO:0005634 "nucleus" evidence=ISM

GO:0001676 "long-chain fatty acid metabolic process" evidence=RCA;IDA

GO:0004467 "long-chain fatty acid-CoA ligase activity" evidence=IDA

GO:0006631 "fatty acid metabolic process" evidence=TAS

GO:0002213 "defense response to insect" evidence=RCA

GO:0006633 "fatty acid biosynthetic process" evidence=RCA;TAS

TAIR|locus:2014265 LACS3 "long-chain acyl-CoA synthetase 3" [Arabidopsis thaliana (taxid:3702)]

 Score = 1745 (619.3 bits), Expect = 9.0e-180, P = 9.0e-180
 Identities = 330/652 (50%), Positives = 449/652 (68%)

Query:     4 FAAQVEEGKEGKDG-KPSVGPVYRNLLASNGFPSVDSDLNTAWDIFSMSVQKYPGNRMLG 62
             +  +VE+GK+G DG  PSVGPVYR++ A +GFP    DL +AWDIF +SV+K P N MLG
Sbjct:     6 YIVEVEKGKQGVDGGSPSVGPVYRSIYAKDGFPEPPDDLVSAWDIFRLSVEKSPNNPMLG 65

Query:    63 WRPFVDGKFGPYVWKTYKEVYEEVLQIVSALRASGAEPGCRVGIYGANCPQWVEAMEACN 122
              R  VDGK G YVW+TYKEV+  V+++ +++R  G   G + GIYGAN P+W+ +MEACN
Sbjct:    66 RREIVDGKAGKYVWQTYKEVHNVVIKLGNSIRTIGVGKGDKCGIYGANSPEWIISMEACN 125

Query:   123 ALSLICVPLYDTLGPGAVNFILDHAEIDFVFVQDKKVKELLSPDCRSAQRLRVMVCFTSL 182
             A  L CVPLYDTLG GA+ FI+ HAE+   F ++ K+ ELL    +S + L+ +V F  +
Sbjct:   126 AHGLYCVPLYDTLGAGAIEFIICHAEVSLAFAEENKISELLKTAPKSTKYLKYIVSFGEV 185

Query:   183 TAEQKEMAVQTGIKPYSWDEFLHLGKVNEMEILPPQPFNICTIMYTSGTSGDPKGVVLTH 242
             T  Q+  A +  +  YSWD+FL LG+    E+   +  ++CTIMYTSGT+GDPKGV+LT+
Sbjct:   186 TNNQRVEAERHRLTIYSWDQFLKLGEGKHYELPEKRRSDVCTIMYTSGTTGDPKGVLLTN 245

Query:   243 ETIATFVSGVDLFLDQFEDKMTVDDVYLSFLPLAHILDRVIEEYFFRRGASVGYYHGDLN 302
             E+I   + GV   L   ++++T  DVYLS+LPLAHI DRVIEE      AS+G++ GD+ 
Sbjct:   246 ESIIHLLEGVKKLLKTIDEELTSKDVYLSYLPLAHIFDRVIEELCIYEAASIGFWRGDVK 305

Query:   303 ALRDDLMELKPTLLAGVPRVFEKIHEGIKKALEELRPLRRRIFDALYKYKLAWMNMGYKQ 362
              L +D+  LKPT+   VPRV E+I+ G+++ L +   +++++F+  +KYK   M  G   
Sbjct:   306 ILIEDIAALKPTVFCAVPRVLERIYTGLQQKLSDGGFVKKKLFNFAFKYKHKNMEKGQPH 365

Query:   363 REASPLADLLAFRKVKARLGGRLRLVISGGAPLSTEVEEFLRVTCCAFLVQGYGLTETCG 422
              +ASP+AD + F+KVK  LGG +RL++SG APL+  +E FLRV  CA ++QGYGLTE+CG
Sbjct:   366 EQASPIADKIVFKKVKEGLGGNVRLILSGAAPLAAHIESFLRVVACAHVLQGYGLTESCG 425

Query:   423 PTTVCFPDEMCMVGTAGPVSVYSELRLEEVPEMGYSPLDDPPCGEVCVRGKTLFSGYYKN 482
              T V  P+E+ M+GT GP     ++RLE VPEMGY  L   P GE+C+RGKTLFSGYYK 
Sbjct:   426 GTFVSIPNELSMLGTVGPPVPNVDIRLESVPEMGYDALASNPRGEICIRGKTLFSGYYKR 485

Query:   483 PDLTRESIIDGWFHTGDIGQILPNGVVKIIDRKKNLIKISQGEYVALEYLENVYCVAPII 542
              DLT+E  IDGW HTGD+G+  P+G +KIIDRKKN+ K+SQGEYVA+E LEN+Y     I
Sbjct:   486 EDLTQEVFIDGWLHTGDVGEWQPDGAMKIIDRKKNIFKLSQGEYVAVENLENIYSHVAAI 545

Query:   543 EDIWVYGDSLKSMLVAVVVPCEEDTKKWAYSNGHAGSFLELCSLVQLQNYILSELKNAAE 602
             E IWVYG+S +S LVAVV P +   + WA  +  +G F  +C   + + ++L E    A+
Sbjct:   546 ESIWVYGNSYESYLVAVVCPSKIQIEHWAKEHKVSGDFESICRNQKTKEFVLGEFNRVAK 605

Query:   603 RNKLRGFEHIKGVILDPRPFDMERDLVTATLKKKRNKLLIYYQVEIDQLYEK 654
               KL+GFE IKGV LD  PFDMERDL+T + K KR +LL YYQ EID++Y+K
Sbjct:   606 DKKLKGFELIKGVHLDTVPFDMERDLITPSYKMKRPQLLKYYQKEIDEMYKK 657

GO:0003824 "catalytic activity" evidence=IEA

GO:0005634 "nucleus" evidence=ISM

GO:0001676 "long-chain fatty acid metabolic process" evidence=RCA;IDA

GO:0004467 "long-chain fatty acid-CoA ligase activity" evidence=IDA

GO:0006631 "fatty acid metabolic process" evidence=TAS

GO:0002213 "defense response to insect" evidence=RCA

GO:0006633 "fatty acid biosynthetic process" evidence=RCA;TAS

GO:0005783 "endoplasmic reticulum" evidence=IDA

TAIR|locus:2010177 LACS2 "long-chain acyl-CoA synthetase 2" [Arabidopsis thaliana (taxid:3702)]

 Score = 1579 (560.9 bits), Expect = 3.5e-162, P = 3.5e-162
 Identities = 306/649 (47%), Positives = 420/649 (64%)

Query:     8 VEEGKEGKDGKPSVGPVYRNLLASNGFPSVDSDLNTAWDIFSMSVQKYPGNRMLGWRPFV 67
             VEEG+      PS GPVYR   A +G   + +D+++ W  FS +V+KYP  +MLG R   
Sbjct:    11 VEEGRPATAEHPSAGPVYRCKYAKDGLLDLPTDIDSPWQFFSEAVKKYPNEQMLGQRVTT 70

Query:    68 DGKFGPYVWKTYKEVYEEVLQIVSALRASGAEPGCRVGIYGANCPQWVEAMEACNALSLI 127
             D K GPY W TYKE ++  ++I SA+R+ G +PG   GIYGANCP+W+ AMEAC +  + 
Sbjct:    71 DSKVGPYTWITYKEAHDAAIRIGSAIRSRGVDPGHCCGIYGANCPEWIIAMEACMSQGIT 130

Query:   128 CVPLYDTLGPGAVNFILDHAEIDFVFVQDKKVKELLSPDCRSAQRLRVMVCFTSLTAEQK 187
              VPLYD+LG  AV FI++HAE+  VFVQ+K V  +LS     +  L+ +V F  +++ QK
Sbjct:   131 YVPLYDSLGVNAVEFIINHAEVSLVFVQEKTVSSILSCQKGCSSNLKTIVSFGEVSSTQK 190

Query:   188 EMAVQTGIKPYSWDEFLHLGKVNEMEILPPQPFNICTIMYTSGTSGDPKGVVLTHETIAT 247
             E A    +  +SW+EF  +G ++E  +   +  +ICTIMYTSGT+G+PKGV+L +  I+ 
Sbjct:   191 EEAKNQCVSLFSWNEFSLMGNLDEANLPRKRKTDICTIMYTSGTTGEPKGVILNNAAISV 250

Query:   248 FVSGVDLFLDQFEDKMTVDDVYLSFLPLAHILDRVIEEYFFRRGASVGYYHGDLNALRDD 307
              V  +D  L+  +      DV+ S+LPLAH  D+V+E YF  RG+SVGY+ GD+  L DD
Sbjct:   251 QVLSIDKMLEVTDRSCDTSDVFFSYLPLAHCYDQVMEIYFLSRGSSVGYWRGDIRYLMDD 310

Query:   308 LMELKPTLLAGVPRVFEKIHEGIKKALEELRPLRRRIFDALYKYKLAWMNMGYKQREASP 367
             +  LKPT+  GVPRV++K++ GI + +     +R+++FD  Y YKL  M  G+ Q EASP
Sbjct:   311 VQALKPTVFCGVPRVYDKLYAGIMQKISASGLIRKKLFDFAYNYKLGNMRKGFSQEEASP 370

Query:   368 LADLLAFRKVKARLGGRLRLVISGGAPLSTEVEEFLRVTCCAFLVQGYGLTETCGPTTVC 427
               D L F K+K  LGGR  +++SG APL   VEEFLR+   + L QGYGLTE+CG +   
Sbjct:   371 RLDRLMFDKIKEALGGRAHMLLSGAAPLPRHVEEFLRIIPASNLSQGYGLTESCGGSFTT 430

Query:   428 FPDEMCMVGTAGPVSVYSELRLEEVPEMGYSPLD-DPPCGEVCVRGKTLFSGYYKNPDLT 486
                   MVGT G      E RL  VPEMGY     D P GE+C+RG ++FSGY+K  DLT
Sbjct:   431 LAGVFSMVGTVGVPMPTVEARLVSVPEMGYDAFSADVPRGEICLRGNSMFSGYHKRQDLT 490

Query:   487 RESIIDGWFHTGDIGQILPNGVVKIIDRKKNLIKISQGEYVALEYLENVYCVAPIIEDIW 546
              + +IDGWFHTGDIG+   +G +KIIDRKKN+ K+SQGEYVA+E LEN Y   P+I  IW
Sbjct:   491 DQVLIDGWFHTGDIGEWQEDGSMKIIDRKKNIFKLSQGEYVAVENLENTYSRCPLIAQIW 550

Query:   547 VYGDSLKSMLVAVVVPCEEDTKKWAYSNGHA-GSFLELCSLVQLQNYILSELKNAAERNK 605
             VYG+S +S LV VVVP  +  + WA  N  +   F  LC  ++ Q Y L EL + A++ +
Sbjct:   551 VYGNSFESFLVGVVVPDRKAIEDWAKLNYQSPNDFESLCQNLKAQKYFLDELNSTAKQYQ 610

Query:   606 LRGFEHIKGVILDPRPFDMERDLVTATLKKKRNKLLIYYQVEIDQLYEK 654
             L+GFE +K + L+P PFD+ERDL+T T K KR +LL +Y+  +DQLY +
Sbjct:   611 LKGFEMLKAIHLEPNPFDIERDLITPTFKLKRPQLLQHYKGIVDQLYSE 659

GO:0003824 "catalytic activity" evidence=IEA

GO:0005634 "nucleus" evidence=ISM

GO:0001676 "long-chain fatty acid metabolic process" evidence=RCA;IDA

GO:0004467 "long-chain fatty acid-CoA ligase activity" evidence=IDA

GO:0006631 "fatty acid metabolic process" evidence=TAS

GO:0010143 "cutin biosynthetic process" evidence=IMP

GO:0050832 "defense response to fungus" evidence=IMP

GO:0010311 "lateral root formation" evidence=IMP

GO:0010025 "wax biosynthetic process" evidence=IGI

GO:0031957 "very long-chain fatty acid-CoA ligase activity" evidence=IDA

GO:0005783 "endoplasmic reticulum" evidence=IDA

GO:0009506 "plasmodesma" evidence=IDA

GO:0002213 "defense response to insect" evidence=RCA

GO:0006633 "fatty acid biosynthetic process" evidence=RCA;TAS

TAIR|locus:2083013 LACS6 "AT3G05970" [Arabidopsis thaliana (taxid:3702)]

 Score = 1128 (402.1 bits), Expect = 2.2e-114, P = 2.2e-114
 Identities = 259/630 (41%), Positives = 358/630 (56%)

Query:    34 FPSVDSDLNTAWDIFSMSVQKYPGNRMLGWRPFVDGKFGPYVWKTYKEVYEEVLQIVSAL 93
             FP    D+ T  D F  +V  +   + LG R  VDG  G Y W TY E       + S L
Sbjct:    77 FPD-HPDIATLHDNFEHAVHDFRDYKYLGTRVRVDGTVGDYKWMTYGEAGTARTALGSGL 135

Query:    94 RASGAEPGCRVGIYGANCPQWVEAMEACNALSLICVPLYDTLGPGAVNFILDHAEIDFVF 153
                G   G  VGIY  N P+W+    AC++ S + VPLYDTLGP AV FI++HA +  +F
Sbjct:   136 VHHGIPMGSSVGIYFINRPEWLIVDHACSSYSYVSVPLYDTLGPDAVKFIVNHATVQAIF 195

Query:   154 VQDKKVKELLSPDCRSAQ-RLRVMVCFTSLTAEQKEMAVQTGIKPYSWDEFLHLGKVNEM 212
                + +  LLS  C S    +R++V    L      +   +G+K  S+   L+ G+ N  
Sbjct:   196 CVAETLNSLLS--CLSEMPSVRLVVVVGGLIESLPSLPSSSGVKVVSYSVLLNQGRSNPQ 253

Query:   213 EILPPQPFNICTIMYTSGTSGDPKGVVLTHETIATFVSGVDLFLDQFEDKMTVDDVYLSF 272
                PP+P ++ TI YTSGT+G PKGVVLTH  +   V+G       F  K    DVY+S+
Sbjct:   254 RFFPPKPDDVATICYTSGTTGTPKGVVLTHANLIANVAG-----SSFSVKFFSSDVYISY 308

Query:   273 LPLAHILDR---VIEEYFFRRGASVGYYHGDLNALRDDLMELKPTLLAGVPRVFEKIHEG 329
             LPLAHI +R   ++  YF   G +VG+Y GD   L DDL  L+PT+ + VPR++ +I+ G
Sbjct:   309 LPLAHIYERANQILTVYF---GVAVGFYQGDNMKLLDDLAALRPTVFSSVPRLYNRIYAG 365

Query:   330 IKKALEELRPLRRRIFDALYKYKLAWMNMGYKQREASPLADLLAFRKVKARLGGRLRLVI 389
             I  A++    L+ R+F+A Y  K   +  G   + ASP+ D L F K+K RLGGR+R + 
Sbjct:   366 IINAVKTSGGLKERLFNAAYNAKKQALLNG---KSASPIWDRLVFNKIKDRLGGRVRFMT 422

Query:   390 SGGAPLSTEVEEFLRVTCCAFLVQGYGLTET-CGPTTVCFPDEMCMVGTAGPVSVYSELR 448
             SG +PLS EV EFL+V     + +GYG+TET C  + +   D +   G  G  +   E++
Sbjct:   423 SGASPLSPEVMEFLKVCFGGRVTEGYGMTETSCVISGMDEGDNL--TGHVGSPNPACEVK 480

Query:   449 LEEVPEMGYSPLDDP-PCGEVCVRGKTLFSGYYKNPDLTRESII-DGWFHTGDIGQILPN 506
             L +VPEM Y+  D P P GE+CVRG  +F+GYYK+   T+E I  DGW HTGDIG  LP 
Sbjct:   481 LVDVPEMNYTSADQPHPRGEICVRGPIIFTGYYKDEIQTKEVIDEDGWLHTGDIGLWLPG 540

Query:   507 GVVKIIDRKKNLIKISQGEYVALEYLENVYCVAPIIEDIWVYGDSLKSMLVAVVVPCEED 566
             G +KIIDRKKN+ K++QGEY+A E +ENVY     +   ++YGDS  S LVAVV    + 
Sbjct:   541 GRLKIIDRKKNIFKLAQGEYIAPEKIENVYAKCKFVGQCFIYGDSFNSSLVAVVSVDPDV 600

Query:   567 TKKWAYSNGHAGSFL-ELCSLVQLQNYILSELKNAAERNKLRGFEHIKGVILDPRPFDME 625
              K WA S G  G  L ELC+  +++  +LS++       +LRGFE  K V L   PF +E
Sbjct:   601 LKSWAASEGIKGGDLRELCNNPRVKAAVLSDMDTVGREAQLRGFEFAKAVTLVLEPFTLE 660

Query:   626 RDLVTATLKKKRNKLLIYYQVEIDQLYEKL 655
               L+T T K KR +   Y+   I  +Y++L
Sbjct:   661 NGLLTPTFKIKRPQAKEYFAEAITNMYKEL 690

GO:0001676 "long-chain fatty acid metabolic process" evidence=RCA;IDA;TAS

GO:0003824 "catalytic activity" evidence=IEA

GO:0009507 "chloroplast" evidence=ISM

GO:0004467 "long-chain fatty acid-CoA ligase activity" evidence=IDA;TAS

GO:0006631 "fatty acid metabolic process" evidence=TAS

GO:0005777 "peroxisome" evidence=IDA

GO:0010193 "response to ozone" evidence=IEP

GO:0016020 "membrane" evidence=IDA

GO:0002213 "defense response to insect" evidence=RCA

GO:0006633 "fatty acid biosynthetic process" evidence=RCA

GO:0006635 "fatty acid beta-oxidation" evidence=RCA

TAIR|locus:2143661 LACS7 "AT5G27600" [Arabidopsis thaliana (taxid:3702)]

 Score = 1084 (386.6 bits), Expect = 1.0e-109, P = 1.0e-109
 Identities = 245/627 (39%), Positives = 352/627 (56%)

Query:    34 FPSVDSDLNTAWDIFSMSVQKYPGNRMLGWRPFVDGKFGPYVWKTYKEVYEEVLQIVSAL 93
             FP    ++ T  D F  +V+ Y  N+ LG R   DG  G Y W TY E   E   I S L
Sbjct:    77 FPD-HPEIGTLHDNFVHAVETYAENKYLGTRVRSDGTIGEYSWMTYGEAASERQAIGSGL 135

Query:    94 RASGAEPGCRVGIYGANCPQWVEAMEACNALSLICVPLYDTLGPGAVNFILDHAEIDFVF 153
                G   G  VG+Y  N P+W+    AC A S + VPLYDTLGP AV F+++HA +  +F
Sbjct:   136 LFHGVNQGDCVGLYFINRPEWLVVDHACAAYSFVSVPLYDTLGPDAVKFVVNHANLQAIF 195

Query:   154 VQDKKVKELLSPDCRSAQRLRVMVCFTSLTAEQKEMAVQTGIKPYSWDEFLHLGKVNEME 213
                + +  LLS        +R++V           +   TG+   S+ + L  G+ +   
Sbjct:   196 CVPQTLNILLS-FLAEIPSIRLIVVVGGADEHLPSLPRGTGVTIVSYQKLLSQGRSSLHP 254

Query:   214 ILPPQPFNICTIMYTSGTSGDPKGVVLTHETIATFVSGVDLFLDQFEDKMTVDDVYLSFL 273
               PP+P +I TI YTSGT+G PKGVVLTH  +   V+G  +  + F       DVY+S+L
Sbjct:   255 FSPPKPEDIATICYTSGTTGTPKGVVLTHGNLIANVAGSSVEAEFFPS-----DVYISYL 309

Query:   274 PLAHILDRVIEEYFFRRGASVGYYHGDLNALRDDLMELKPTLLAGVPRVFEKIHEGIKKA 333
             PLAHI +R  +      G +VG+Y GD+  L DD   L+PT+   VPR++ +I++GI  A
Sbjct:   310 PLAHIYERANQIMGVYGGVAVGFYQGDVFKLMDDFAVLRPTIFCSVPRLYNRIYDGITSA 369

Query:   334 LEELRPLRRRIFDALYKYKLAWMNMGYKQREASPLADLLAFRKVKARLGGRLRLVISGGA 393
             ++    +++R+F+  Y  K   +  G   R  S   D L F K+K +LGGR+R + SG +
Sbjct:   370 VKSSGVVKKRLFEIAYNSKKQAIING---RTPSAFWDKLVFNKIKEKLGGRVRFMGSGAS 426

Query:   394 PLSTEVEEFLRVTCCAFLVQGYGLTET-CGPTTVCFPDEMCMVGTAGPVSVYSELRLEEV 452
             PLS +V +FLR+     + +GYG+TET C  + +   D +   G  G  +   E++L +V
Sbjct:   427 PLSPDVMDFLRICFGCSVREGYGMTETSCVISAMDDGDNLS--GHVGSPNPACEVKLVDV 484

Query:   453 PEMGYSPLDDP-PCGEVCVRGKTLFSGYYKNPDLTRESII-DGWFHTGDIGQILPNGVVK 510
             PEM Y+  D P P GE+CVRG  +F GYYK+ + TRE +  DGW HTGDIG  LP G +K
Sbjct:   485 PEMNYTSDDQPYPRGEICVRGPIIFKGYYKDEEQTREILDGDGWLHTGDIGLWLPGGRLK 544

Query:   511 IIDRKKNLIKISQGEYVALEYLENVYCVAPIIEDIWVYGDSLKSMLVAVVVPCEEDTKKW 570
             IIDRKKN+ K++QGEY+A E +ENVY     +   +++GDS  S LVA+V    E  K W
Sbjct:   545 IIDRKKNIFKLAQGEYIAPEKIENVYTKCRFVSQCFIHGDSFNSSLVAIVSVDPEVMKDW 604

Query:   571 AYSNGHAGSFL-ELCSLVQLQNYILSELKNAAERNKLRGFEHIKGVILDPRPFDMERDLV 629
             A S G     L +LC+  +++  +L+E+ +     +LRGFE  K V L P PF +E  L+
Sbjct:   605 AASEGIKYEHLGQLCNDPRVRKTVLAEMDDLGREAQLRGFEFAKAVTLVPEPFTLENGLL 664

Query:   630 TATLKKKRNKLLIYYQVEIDQLYEKLA 656
             T T K KR +   Y+   I ++Y ++A
Sbjct:   665 TPTFKIKRPQAKAYFAEAISKMYAEIA 691

GO:0001676 "long-chain fatty acid metabolic process" evidence=IDA;TAS

GO:0003824 "catalytic activity" evidence=IEA

GO:0005634 "nucleus" evidence=ISM

GO:0004467 "long-chain fatty acid-CoA ligase activity" evidence=IDA;TAS

GO:0006631 "fatty acid metabolic process" evidence=TAS

GO:0005777 "peroxisome" evidence=IDA;TAS

GO:0005515 "protein binding" evidence=IPI

GO:0009651 "response to salt stress" evidence=IEP

GO:0010193 "response to ozone" evidence=IEP

GO:0000278 "mitotic cell cycle" evidence=RCA

GO:0006396 "RNA processing" evidence=RCA

GO:0006635 "fatty acid beta-oxidation" evidence=RCA

GO:0007031 "peroxisome organization" evidence=RCA

GO:0009610 "response to symbiotic fungus" evidence=RCA

DICTYBASE|DDB_G0269474 fcsB "fatty acyl-CoA synthetase" [Dictyostelium discoideum (taxid:44689)]

 Score = 1068 (381.0 bits), Expect = 4.9e-108, P = 4.9e-108
 Identities = 233/659 (35%), Positives = 369/659 (55%)

Query:     4 FAAQVEEGKEGKDGKPSVGPVYRNLLASNGFPSV--DSDLNTAWDIFSMSVQKYPGNRML 61
             +   VE G++ ++G    G + RN   ++   S   D ++ T +D    S +KY   +  
Sbjct:    27 YGQTVEIGEKPENG----GRIRRNSACADHLISFLEDDEIYTLYDSLVKSCKKYGERKCF 82

Query:    62 GWRPF-VDGKFGPYVWKTYKEVYEEVLQIVSALRASGAEPGCRVGIYGANCPQWVEAMEA 120
             G R    +G  G + W +Y    E    I   L   G +P  +VGI+  N  +W+    A
Sbjct:    83 GERKKDSNGNLGKFEWISYNTYLERCEYIQQGLCELGLKPKSKVGIFSKNRLEWLIVHSA 142

Query:   121 CNALSLICVPLYDTLGPGAVNFILDHAEIDFVFVQDKKVKELLSPDCRSAQRLRVMVCFT 180
                 S   V  Y+TLG  +++++ +HAEI   F   + +++ L    +  + L+ ++CF 
Sbjct:   143 SFIQSYCVVSFYETLGVESLSYVTEHAEIGLAFCSAETLQKTLDI-AKGVKVLKTIICFD 201

Query:   181 SLTAEQKEMAVQTGIKPYSWDEFLHLGK-VN-EMEILPPQPFNICTIMYTSGTSGDPKGV 238
             S+  E   +A + G+  Y++DE +  GK  N + +  PP P  + TIMYTSGT+G PKGV
Sbjct:   202 SIDKEHYNIAKELGVTLYTYDEIMKKGKEANGKHKHTPPTPDTLSTIMYTSGTTGPPKGV 261

Query:   239 VLTHETIATFVSGVDLFLDQFEDKMTVDDVYLSFLPLAHILDRVIEEYFFRRGASVGYYH 298
             ++TH+ + + V  V  F+  ++      DV+ S+LP AH+L+RV+    F  GA++G + 
Sbjct:   262 MITHKNLTSVVCAVSDFIKVYDT-----DVHYSYLPYAHVLERVVILAAFHFGAAIGIFS 316

Query:   299 GDLNALRDDLMELKPTLLAGVPRVFEKIHEGIKKALEELRPLRRRIFDALYKYKLAWMNM 358
             GD++ +  ++  L PTL  GVPRVFE+I   + K + +   L R +F+  Y  K   +  
Sbjct:   317 GDISNILVEVKLLSPTLFIGVPRVFERIKTNVFKEISKKPALLRTLFNGAYNLKYLSIQH 376

Query:   359 GYKQREASPLADLLAFRKVKARLGGRLRLVISGGAPLSTEVEEFLRVTCCAFLVQGYGLT 418
             G+K      + DL+ F K+K  LGG++R+++SG APLS + E FLRV  C  ++QGYG +
Sbjct:   377 GFKLPIIEKVLDLVFFSKIKQALGGKVRVILSGSAPLSFDTEVFLRVVMCCCVLQGYGAS 436

Query:   419 ETCGPTTVC--FPDEMCMVGTAGPVSVYSELRLEEVPEMGYSPLDDPPCGEVCVRGKTLF 476
             E CG    C    DE   VGT GP    +E++L +VPE+GY    +   GEVC+RG ++ 
Sbjct:   437 EGCGGDA-CKRLDDES--VGTIGPPFASNEIKLVDVPELGYDSNGEVQTGEVCLRGPSIS 493

Query:   477 SGYYKNPDLTRESIIDGWFHTGDIGQILPNGVVKIIDRKKNLIKISQGEYVALEYLENVY 536
             SGYYK+ + TRE   DGWFHTGDIG+   +G + I+DRKKN+ K+SQGEYVA+E +E + 
Sbjct:   494 SGYYKDEEKTREEFKDGWFHTGDIGRWNRDGSLSIVDRKKNIFKLSQGEYVAVEKIETIV 553

Query:   537 CVAPIIEDIWVYGDSLKSMLVAVVVPCEEDTKKWAYSNGHAGSFLELCSLVQLQNYILSE 596
               +  +E + +YGDS KS ++A++ P  E   +WA S        E+C        +L +
Sbjct:   554 VKSEYVEQVCIYGDSQKSCVIAIIHPHPESCSEWAGSKKTDKDIKEICKNQDFIKVVLDD 613

Query:   597 LKNAAERNKLRGFEHIKGVILDPRPFDMERDLVTATLKKKRNKLLIYYQVEIDQLYEKL 655
             +    +++ L GFE  K + L P  F  + +L+T + K KR+++  Y++ EI +LY KL
Sbjct:   614 IIKNCKKSGLHGFEIPKAIHLTPEAFSDQNNLLTPSFKLKRHEIKKYFEDEIKKLYSKL 672

GO:0006631 "fatty acid metabolic process" evidence=IEA;ISS

GO:0004467 "long-chain fatty acid-CoA ligase activity" evidence=IEA;ISS

GO:0001676 "long-chain fatty acid metabolic process" evidence=IEA;ISS

GO:0008152 "metabolic process" evidence=IEA

GO:0003824 "catalytic activity" evidence=IEA

GO:0016874 "ligase activity" evidence=IEA

GO:0006629 "lipid metabolic process" evidence=IEA

GO:0005783 "endoplasmic reticulum" evidence=IEA

GO:0005524 "ATP binding" evidence=IEA

GO:0000166 "nucleotide binding" evidence=IEA

GO:0044351 "macropinocytosis" evidence=RCA

DICTYBASE|DDB_G0269242 fcsA "long-chain-fatty-acid-CoA ligase" [Dictyostelium discoideum (taxid:44689)]

 Score = 1035 (369.4 bits), Expect = 1.6e-104, P = 1.6e-104
 Identities = 237/626 (37%), Positives = 355/626 (56%)

Query:    36 SVDSDLNTAWDIFSMSVQKYPGNRMLGWRPFV-DGKFGPYVWKTYKEVYEEVLQIVSALR 94
             S D    T +D++   + K   +  LG R  + DGK G Y W +YK+       I SAL 
Sbjct:    48 SPDGKTFTLYDVYR--INKDSDSNFLGIRELLADGKRGDYKWISYKQACIRANNIGSALV 105

Query:    95 ASGAEPGCRVGIYGANCPQWVEA-MEACNALSLICVPLYDTLGPGAVNFILDHAEIDFVF 153
               G   G R+GI+  N P+WV + M A N  SL+ V LY TLG  A+ ++++H+EI  + 
Sbjct:   106 QLGLNKGDRIGIFSINRPEWVLSDMAAMNH-SLVPVALYATLGANAIEYVVNHSEISVLL 164

Query:   154 VQDKKVKELLSPDCRSAQRLRVMVCFTSLT-AEQKEMAVQTGIKPYSWDEFLHLGKVNEM 212
              + K V+++LS        ++ +V +  L  A   +      +K Y   +F  LG+ N  
Sbjct:   165 CEGKNVEKILS---MPGTTIKTIVSYDPLPQATLDKFKDNENVKLYLLSDFEKLGEQNPA 221

Query:   213 EILPPQPFNICTIMYTSGTSGDPKGVVLTHETIATFVSGVDLFLDQFEDKMTV-DDVYLS 271
             +   P P ++CT++YTSG++G+PKGV+LTH  + + V+G +     F     + +DV++S
Sbjct:   222 QHEVPSPEDLCTLLYTSGSTGNPKGVMLTHTNMVSEVAGAN-----FSPAGVIPEDVHMS 276

Query:   272 FLPLAHILDRVIEEYFFRRGASVGYYHGDLNALRDDLMELKPTLLAGVPRVFEKIHEGIK 331
             +LPLAH  +R +       G  +G++ G +  L +D+  L+PT L G PRV++++H+ + 
Sbjct:   277 YLPLAHSFERAVVSLMCYVGGQIGFFSGLIPELFNDIQVLRPTFLCGAPRVWQRLHDKLW 336

Query:   332 KALEELRPLRRRIFDALYKYKLAWMNMGYKQREASPLADLLAFRKVKARLGGRLRLVISG 391
               +     L++ +F+     K + + +G      +P+ D L F K K RLGGR++ ++SG
Sbjct:   337 FTVNNDSWLKKFLFNWGLNSKQSALRLG----STTPIWDKLVFSKTKDRLGGRVKFILSG 392

Query:   392 GAPLSTEVEEFLRVTCCAFLVQGYGLTETCGPTTVCFPDEMCMVGTAGPVSVYSELRLEE 451
              APL  ++ EFLR   C  +V GYGL+E  G  +V +P++   VG  GP     E++L +
Sbjct:   393 SAPLDPKLAEFLRACFCCPVVSGYGLSENVGGASVAYPEDN-NVGHVGPPLSACEMKLID 451

Query:   452 VPEMGYSPLDDP-PCGEVCVRGKTLFSGYYKNPDLTRESII-DGWFHTGDIGQILPNGVV 509
             VPEM Y   D P P GEVC+RG  +F GY+K+P+ T+E +  DGWFHTGDIG+   NG +
Sbjct:   452 VPEMNYFSTDKPCPRGEVCIRGFNVFKGYFKDPEKTKEDLKEDGWFHTGDIGRWNENGTL 511

Query:   510 KIIDRKKNLIKISQGEYVALEYLENVYCVAPIIEDIWVYGDSLKSMLVAVVVPCEEDTKK 569
              IIDRKKN+ K+SQGEYVA EYLE+V+  +P    ++VYGDSL S LV VVVP  E  +K
Sbjct:   512 SIIDRKKNIFKLSQGEYVAAEYLESVFVRSPFASQVFVYGDSLNSFLVGVVVPDFEVVQK 571

Query:   570 -WA--YSNGHAGSFLELCSLVQLQNYILSELKNAAERNKLRGFEHIKGVILDPRPFDMER 626
              +A  Y      +   L    +L   ILS     A   KL GFE +K + ++  PF  E 
Sbjct:   572 LFASKYPELDVSNHATLAKSKELYKEILSSFDACAAEAKLHGFEKLKHIYVEHEPFTEEN 631

Query:   627 DLVTATLKKKRNKLLIYYQVEIDQLY 652
             +L+T + K KR +L   YQ  ID LY
Sbjct:   632 NLLTPSFKPKRPQLKERYQTIIDTLY 657

GO:0045335 "phagocytic vesicle" evidence=IDA

GO:0005769 "early endosome" evidence=IDA

GO:0010009 "external side of endosome membrane" evidence=IDA

GO:0006631 "fatty acid metabolic process" evidence=IEA;IMP

GO:0005737 "cytoplasm" evidence=IDA

GO:0004467 "long-chain fatty acid-CoA ligase activity" evidence=IEA;TAS

GO:0001676 "long-chain fatty acid metabolic process" evidence=IEA;TAS

GO:0008152 "metabolic process" evidence=IEA

GO:0003824 "catalytic activity" evidence=IEA

GO:0016874 "ligase activity" evidence=IEA

GO:0016020 "membrane" evidence=IEA

GO:0006629 "lipid metabolic process" evidence=IEA

GO:0005768 "endosome" evidence=IEA

GO:0005524 "ATP binding" evidence=IEA

GO:0000166 "nucleotide binding" evidence=IEA

GO:0010008 "endosome membrane" evidence=IEA

GO:0044351 "macropinocytosis" evidence=RCA

FB|FBgn0036821 CG3961 [Drosophila melanogaster (taxid:7227)]

 Score = 1035 (369.4 bits), Expect = 1.6e-104, P = 1.6e-104
 Identities = 229/632 (36%), Positives = 355/632 (56%)

Query:    30 ASNG-FPS-VDSDLNTAWDIFSMSVQKYPGNRMLGWRPFVDGKFGPYVWKTYKEVYEEVL 87
             + NG F S +  ++ T +  F            LGWR  +     PY W  Y E      
Sbjct:    88 SKNGKFVSYITENVRTLYQTFREGAYASNNGPCLGWRETLTS---PYQWINYDEALLRAK 144

Query:    88 QIVSALRASGAEPGCRVGIYGANCPQWVEAMEACNALSLICVPLYDTLGPGAVNFILDHA 147
                + + A GA P   +GIY  N P+W+   + C + SL+ VPLYDTLGP A  FI+   
Sbjct:   145 NFGAGMLALGARPKQLIGIYSQNRPEWILYEQGCYSFSLVVVPLYDTLGPDACAFIIRQT 204

Query:   148 EIDFVFVQDK-KVKELLSPDCRSAQRLRVMVCFTSLTAEQKEMAVQTGIKPYSWDEFLHL 206
             ++  V V+D  K   LL    RS   L+++V    +     E A   GI+ +S+ +   L
Sbjct:   205 DMQVVIVEDDGKAAMLLEKAPRS---LKIIVAIKPIRQTTLERARSRGIQIFSFIDVEKL 261

Query:   207 G-KVNEMEILPPQPFNICTIMYTSGTSGDPKGVVLTHETIATFVSGV-DLFLDQFEDKMT 264
             G K N  E+ PP   ++CT+ YTSGT+G+PKGV+LTH  +   V+GV  + L   + ++ 
Sbjct:   262 GAKGNHPEV-PPTAEDLCTVCYTSGTTGNPKGVMLTHGNV---VAGVCSVILQMGDHRIR 317

Query:   265 VDDVYLSFLPLAHILDRVIEEYFFRRGASVGYYHGDLNALRDDLMELKPTLLAGVPRVFE 324
               DV +SFLPLAH+ +R  E   +  G  VG+Y GD+  L +DL  LKPT++  VPR+  
Sbjct:   318 AGDVMVSFLPLAHMFERCCENGMYYVGGCVGFYSGDIKELTNDLKMLKPTVMPAVPRLLN 377

Query:   325 KIHEGIKKALEELRPLRRRIFDALYKYKLAWMNMGYKQREASPLADLLAFRKVKARLGGR 384
             ++++ I+  +     L+R +F+   + K   +  G  +R      D L F+KV    GG 
Sbjct:   378 RVYDKIQNDISA-SGLKRGLFNMAMRAKEKEIARGVLRRNGC--WDKLVFKKVHQAFGGN 434

Query:   385 LRLVISGGAPLSTEVEEFLRVTCCAFLVQGYGLTETCGPTTVCFPDEMCMVGTAGPVSVY 444
             LRL++ G APL+  V  F+R      +++GYG TE  G  T+    +        PVS  
Sbjct:   435 LRLMVVGSAPLAGNVLTFMRCALGCLVLEGYGQTECTGAITLTVQGDHVPNHVGPPVSC- 493

Query:   445 SELRLEEVPEMGYSPLDDPPCGEVCVRGKTLFSGYYKNPDLTRESI-IDGWFHTGDIGQI 503
             + ++L +VPEM Y    +   GEVCVRG  +F GYYK+P+ T E+I  +GW HTGD+G  
Sbjct:   494 NAVKLVDVPEMEY--FANQNTGEVCVRGSNVFHGYYKDPEKTAEAIDSEGWHHTGDVGMW 551

Query:   504 LPNGVVKIIDRKKNLIKISQGEYVALEYLENVYCVAPIIEDIWVYGDSLKSMLVAVVVPC 563
             LPNG ++IIDR+K++ K+SQGEY+  E +EN+Y ++  +  ++VYG+SLKS ++AVVVP 
Sbjct:   552 LPNGTLRIIDRRKHIFKLSQGEYIVPEKIENIYTLSQYVNQVYVYGESLKSCIIAVVVPD 611

Query:   564 EEDTKKWAYSNGHAGSFLELCSLVQLQNYILSELKNAAERNKLRGFEHIKGVILDPRPFD 623
              +  K+WA  N   G+   LC+   ++  I++++ N  +++ L+ FE +K + L P PF 
Sbjct:   612 TDVLKQWATENNVRGTLSVLCNNKNVKELIMNDMLNWGKQSGLKSFEQVKDIYLHPDPFS 671

Query:   624 MERDLVTATLKKKRNKLLIYYQVEIDQLYEKL 655
             ++  L+T T K KR +L  Y++ +++ +Y+ L
Sbjct:   672 VQNGLLTPTFKAKRPQLKSYFKPQLEDMYKHL 703

GO:0004467 "long-chain fatty acid-CoA ligase activity" evidence=ISS

GO:0008152 "metabolic process" evidence=IEA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

ID	Name	Annotated EC number	Identity	Query coverage	Hit coverage	RBH(Q2H)	RBH(H2Q)
O88813	ACSL5_RAT	6, ., 2, ., 1, ., 3	0.3472	0.9166	0.8857	yes	no
P41216	ACSL1_MOUSE	6, ., 2, ., 1, ., 3	0.3611	0.9121	0.8612	yes	no
O22898	LACS1_ARATH	6, ., 2, ., 1, ., 3	0.6935	0.9939	0.9939	yes	no
P30624	LCF1_YEAST	6, ., 2, ., 1, ., 3	0.3002	0.9106	0.8585	yes	no
Q1ZXQ4	FCSB_DICDI	6, ., 2, ., 1, ., 3	0.3500	0.9712	0.9524	yes	no
Q9ULC5	ACSL5_HUMAN	6, ., 2, ., 1, ., 3	0.3589	0.9136	0.8828	yes	no

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

Prediction Level	EC number	Confidence of Prediction
3rd Layer	6.2.1	0.976
3rd Layer	6.2.1.3	0.991

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Your Input:
	GSVIVG00028146001	SubName- Full=Chromosome chr7 scaffold_42, whole genome shotgun sequence; (669 aa)
		(Vitis vinifera)
Predicted Functional Partners:
	GSVIVG00018681001	SubName- Full=Chromosome chr12 scaffold_18, whole genome shotgun sequence; (691 aa)						•			0.900
	GSVIVG00038876001	SubName- Full=Chromosome chr8 scaffold_99, whole genome shotgun sequence; (448 aa)						•			0.899
	GSVIVG00033040001	SubName- Full=Chromosome chr5 scaffold_64, whole genome shotgun sequence; (428 aa)						•			0.899
	GSVIVG00009919001	SubName- Full=Chromosome undetermined scaffold_1671, whole genome shotgun sequence; Flags- Frag [...] (148 aa)						•			0.899
	GSVIVG00009515001	SubName- Full=Chromosome undetermined scaffold_237, whole genome shotgun sequence; (398 aa)						•			0.899
	GSVIVG00025319001	SubName- Full=Chromosome chr8 scaffold_34, whole genome shotgun sequence; (830 aa)						•			0.800
	GSVIVG00019100001	SubName- Full=Chromosome chr15 scaffold_19, whole genome shotgun sequence; (338 aa)						•			0.800
	GSVIVG00009528001	SubName- Full=Chromosome undetermined scaffold_237, whole genome shotgun sequence; (256 aa)						•			0.800

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	660
PLN02430	660	PLN02430, PLN02430, long-chain-fatty-acid-CoA liga	0.0
PLN02861	660	PLN02861, PLN02861, long-chain-fatty-acid-CoA liga	0.0
PLN02614	666	PLN02614, PLN02614, long-chain acyl-CoA synthetase	0.0
cd05927	539	cd05927, LC-FACS_euk, Eukaryotic long-chain fatty	0.0
PLN02736	651	PLN02736, PLN02736, long-chain acyl-CoA synthetase	0.0
COG1022	613	COG1022, FAA1, Long-chain acyl-CoA synthetases (AM	1e-154
cd05907	456	cd05907, VL_LC_FACS_like, Long-chain fatty acid Co	1e-119
PLN02387	696	PLN02387, PLN02387, long-chain-fatty-acid-CoA liga	1e-114
PTZ00216	700	PTZ00216, PTZ00216, acyl-CoA synthetase; Provision	1e-104
pfam00501	412	pfam00501, AMP-binding, AMP-binding enzyme	8e-88
cd05932	504	cd05932, LC_FACS_bac, Bacterial long-chain fatty a	3e-86
COG0318	534	COG0318, CaiC, Acyl-CoA synthetases (AMP-forming)/	4e-77
cd05933	594	cd05933, ACSBG_like, Bubblegum-like very long-chai	7e-75
cd05936	468	cd05936, FC-FACS_FadD_like, Prokaryotic long-chain	2e-55
PRK06187	521	PRK06187, PRK06187, long-chain-fatty-acid--CoA lig	2e-55
PTZ00342	746	PTZ00342, PTZ00342, acyl-CoA synthetase; Provision	5e-53
cd05911	487	cd05911, Firefly_Luc_like, Firefly luciferase of l	3e-47
cd05903	437	cd05903, CHC_CoA_lg, Cyclohexanecarboxylate-CoA li	1e-44
cd04433	338	cd04433, AFD_class_I, Adenylate forming domain, Cl	5e-44
PRK07656	513	PRK07656, PRK07656, long-chain-fatty-acid--CoA lig	1e-43
cd12119	517	cd12119, ttLC_FACS_AlkK_like, Fatty acyl-CoA synth	5e-41
cd05912	407	cd05912, OSB_CoA_lg, O-succinylbenzoate-CoA ligase	7e-40
cd05904	504	cd05904, 4CL, 4-Coumarate-CoA Ligase (4CL)	1e-39
cd05917	347	cd05917, FACL_like_2, Uncharacterized subfamily of	1e-37
cd05941	430	cd05941, MCS, Malonyl-CoA synthetase (MCS)	4e-37
cd05929	342	cd05929, BACL_like, Bacterial Bile acid CoA ligase	3e-35
cd05935	430	cd05935, LC_FACS_like, Putative long-chain fatty a	2e-32
TIGR01923	436	TIGR01923, menE, O-succinylbenzoate-CoA ligase	6e-32
COG0365	528	COG0365, Acs, Acyl-coenzyme A synthetases/AMP-(fat	7e-32
PRK06839	496	PRK06839, PRK06839, acyl-CoA synthetase; Validated	1e-31
PRK05605	573	PRK05605, PRK05605, long-chain-fatty-acid--CoA lig	2e-31
cd05934	421	cd05934, FACL_DitJ_like, Uncharacterized subfamily	6e-31
PRK07786	542	PRK07786, PRK07786, long-chain-fatty-acid--CoA lig	2e-27
PRK12583	558	PRK12583, PRK12583, acyl-CoA synthetase; Provision	1e-26
cd05926	345	cd05926, FACL_fum10p_like, Subfamily of fatty acid	4e-26
TIGR01733	409	TIGR01733, AA-adenyl-dom, amino acid adenylation d	5e-26
PLN02246	537	PLN02246, PLN02246, 4-coumarate--CoA ligase	8e-25
cd05906	560	cd05906, A_NRPS_TubE_like, The adenylation domain	1e-24
PRK07787	471	PRK07787, PRK07787, acyl-CoA synthetase; Validated	1e-23
cd12118	520	cd12118, ttLC_FACS_AEE21_like, Fatty acyl-CoA synt	4e-23
PLN02860	563	PLN02860, PLN02860, o-succinylbenzoate-CoA ligase	5e-22
TIGR03205	541	TIGR03205, pimA, dicarboxylate--CoA ligase PimA	6e-22
PRK13295	547	PRK13295, PRK13295, cyclohexanecarboxylate-CoA lig	7e-22
PRK07059	557	PRK07059, PRK07059, Long-chain-fatty-acid--CoA lig	3e-21
PRK06710	563	PRK06710, PRK06710, long-chain-fatty-acid--CoA lig	3e-21
cd05945	447	cd05945, DltA, D-alanine:D-alanyl carrier protein	8e-21
PRK05677	562	PRK05677, PRK05677, long-chain-fatty-acid--CoA lig	9e-21
PRK06155	542	PRK06155, PRK06155, crotonobetaine/carnitine-CoA l	3e-20
PRK06087	547	PRK06087, PRK06087, short chain acyl-CoA synthetas	4e-20
PRK08162	545	PRK08162, PRK08162, acyl-CoA synthetase; Validated	2e-19
PRK12492	562	PRK12492, PRK12492, long-chain-fatty-acid--CoA lig	2e-19
cd05944	359	cd05944, FACL_like_4, Uncharacterized subfamily of	4e-19
PRK08316	523	PRK08316, PRK08316, acyl-CoA synthetase; Validated	6e-19
cd05959	506	cd05959, BCL_4HBCL, Benzoate CoA ligase (BCL) and	2e-18
cd12118	520	cd12118, ttLC_FACS_AEE21_like, Fatty acyl-CoA synt	3e-18
COG1020	642	COG1020, EntF, Non-ribosomal peptide synthetase mo	3e-18
PRK08751	560	PRK08751, PRK08751, putative long-chain fatty acyl	6e-18
PRK03640	483	PRK03640, PRK03640, O-succinylbenzoic acid--CoA li	6e-18
cd05919	436	cd05919, BCL_like, Benzoate CoA ligase (BCL) and s	6e-18
cd05920	483	cd05920, 23DHB-AMP_lg, 2,3-dihydroxybenzoate-AMP l	1e-17
TIGR03098	517	TIGR03098, ligase_PEP_1, acyl-CoA ligase (AMP-form	1e-17
PLN02479	567	PLN02479, PLN02479, acetate-CoA ligase	2e-17
PRK06145	497	PRK06145, PRK06145, acyl-CoA synthetase; Validated	2e-17
cd05909	489	cd05909, AAS_C, C-terminal domain of the acyl-acyl	2e-17
PRK08974	560	PRK08974, PRK08974, long-chain-fatty-acid--CoA lig	2e-17
cd05922	350	cd05922, FACL_like_6, Uncharacterized subfamily of	2e-17
PRK07514	504	PRK07514, PRK07514, malonyl-CoA synthase; Validate	3e-17
PTZ00297	1452	PTZ00297, PTZ00297, pantothenate kinase; Provision	1e-16
cd05908	499	cd05908, A_NRPS_MycA_like, The adenylation domain	1e-16
PRK06018	542	PRK06018, PRK06018, putative acyl-CoA synthetase;	1e-16
PLN03102	579	PLN03102, PLN03102, acyl-activating enzyme; Provis	2e-16
PRK07529	632	PRK07529, PRK07529, AMP-binding domain protein; Va	3e-16
cd05931	547	cd05931, FAAL, Fatty acyl-AMP ligase (FAAL)	3e-16
cd05918	447	cd05918, A_NRPS_SidN3_like, The adenylation (A) do	3e-16
cd05972	430	cd05972, MACS_like, Medium-chain acyl-CoA syntheta	5e-16
cd05930	445	cd05930, A_NRPS, The adenylation domain of nonribo	6e-16
PRK07470	528	PRK07470, PRK07470, acyl-CoA synthetase; Validated	8e-16
PLN02330	546	PLN02330, PLN02330, 4-coumarate--CoA ligase-like 1	3e-15
PRK08008	517	PRK08008, caiC, putative crotonobetaine/carnitine-	4e-15
PRK06334	539	PRK06334, PRK06334, long chain fatty acid--[acyl-c	8e-15
TIGR03208	538	TIGR03208, cyc_hxne_CoA_lg, cyclohexanecarboxylate	8e-15
PRK05852	534	PRK05852, PRK05852, acyl-CoA synthetase; Validated	1e-14
cd05921	559	cd05921, FCS, Feruloyl-CoA synthetase (FCS)	2e-14
PRK06178	567	PRK06178, PRK06178, acyl-CoA synthetase; Validated	3e-14
PRK08316	523	PRK08316, PRK08316, acyl-CoA synthetase; Validated	4e-14
cd05971	439	cd05971, MACS_like_3, Uncharacterized subfamily of	5e-14
PLN02574	560	PLN02574, PLN02574, 4-coumarate--CoA ligase-like	7e-14
PRK08314	546	PRK08314, PRK08314, long-chain-fatty-acid--CoA lig	7e-14
PRK03640	483	PRK03640, PRK03640, O-succinylbenzoic acid--CoA li	3e-13
cd05914	448	cd05914, FACL_like_3, Uncharacterized subfamily of	4e-13
cd05968	474	cd05968, AACS_like, Uncharacterized acyl-CoA synth	5e-13
PRK08314	546	PRK08314, PRK08314, long-chain-fatty-acid--CoA lig	3e-12
PRK08315	559	PRK08315, PRK08315, AMP-binding domain protein; Va	3e-12
PRK06188	524	PRK06188, PRK06188, acyl-CoA synthetase; Validated	7e-12
PRK08315	559	PRK08315, PRK08315, AMP-binding domain protein; Va	1e-11
cd05973	440	cd05973, MACS_like_2, Uncharacterized subfamily of	1e-11
PRK09088	488	PRK09088, PRK09088, acyl-CoA synthetase; Validated	5e-11
PRK06164	540	PRK06164, PRK06164, acyl-CoA synthetase; Validated	7e-11
PRK06814	1140	PRK06814, PRK06814, acylglycerophosphoethanolamine	8e-11
PRK08162	545	PRK08162, PRK08162, acyl-CoA synthetase; Validated	1e-10
PRK07867	529	PRK07867, PRK07867, acyl-CoA synthetase; Validated	1e-10
cd12117	474	cd12117, A_NRPS_Srf_like, The adenylation domain o	1e-10
PRK12467	3956	PRK12467, PRK12467, peptide synthase; Provisional	2e-10
TIGR02262	508	TIGR02262, benz_CoA_lig, benzoate-CoA ligase famil	3e-10
PRK08180	614	PRK08180, PRK08180, feruloyl-CoA synthase; Reviewe	4e-10
PRK08633	1146	PRK08633, PRK08633, 2-acyl-glycerophospho-ethanola	4e-10
cd12116	438	cd12116, A_NRPS_Ta1_like, The adenylation domain o	5e-10
PRK07008	539	PRK07008, PRK07008, long-chain-fatty-acid--CoA lig	9e-10
cd05914	448	cd05914, FACL_like_3, Uncharacterized subfamily of	2e-09
cd05923	495	cd05923, CBAL, 4-Chlorobenzoate-CoA ligase (CBAL)	2e-09
TIGR02275	526	TIGR02275, DHB_AMP_lig, 2,3-dihydroxybenzoate-AMP	6e-09
cd12114	476	cd12114, A_NRPS_TlmIV_like, The adenylation domain	9e-09
PRK07798	533	PRK07798, PRK07798, acyl-CoA synthetase; Validated	9e-09
PRK06188	524	PRK06188, PRK06188, acyl-CoA synthetase; Validated	1e-08
cd12114	476	cd12114, A_NRPS_TlmIV_like, The adenylation domain	1e-08
cd05915	509	cd05915, ttLC_FACS_like, Fatty acyl-CoA synthetase	2e-08
PRK12316	5163	PRK12316, PRK12316, peptide synthase; Provisional	2e-08
PRK07470	528	PRK07470, PRK07470, acyl-CoA synthetase; Validated	3e-08
PRK12316	5163	PRK12316, PRK12316, peptide synthase; Provisional	4e-08
PRK09029	458	PRK09029, PRK09029, O-succinylbenzoic acid--CoA li	4e-08
cd12117	474	cd12117, A_NRPS_Srf_like, The adenylation domain o	5e-08
PRK12316	5163	PRK12316, PRK12316, peptide synthase; Provisional	5e-08
COG1021	542	COG1021, EntE, Peptide arylation enzymes [Secondar	5e-08
PRK05620	576	PRK05620, PRK05620, long-chain-fatty-acid--CoA lig	6e-08
PRK12582	624	PRK12582, PRK12582, acyl-CoA synthetase; Provision	9e-08
cd05970	537	cd05970, MACS_AAE_MA_like, Medium-chain acyl-CoA s	1e-07
cd05934	421	cd05934, FACL_DitJ_like, Uncharacterized subfamily	2e-07
PLN02574	560	PLN02574, PLN02574, 4-coumarate--CoA ligase-like	2e-07
PRK09192	579	PRK09192, PRK09192, acyl-CoA synthetase; Validated	2e-07
cd05969	443	cd05969, MACS_like_4, Uncharacterized subfamily of	2e-07
PRK05851	525	PRK05851, PRK05851, long-chain-fatty-acid--[acyl-c	3e-07
PRK09088	488	PRK09088, PRK09088, acyl-CoA synthetase; Validated	4e-07
PRK12467	3956	PRK12467, PRK12467, peptide synthase; Provisional	5e-07
PRK05620	576	PRK05620, PRK05620, long-chain-fatty-acid--CoA lig	5e-07
PRK06178	567	PRK06178, PRK06178, acyl-CoA synthetase; Validated	7e-07
PRK08043	718	PRK08043, PRK08043, bifunctional acyl-[acyl carrie	1e-06
PRK13388	540	PRK13388, PRK13388, acyl-CoA synthetase; Provision	2e-06
PRK12406	509	PRK12406, PRK12406, long-chain-fatty-acid--CoA lig	2e-06
PRK07008	539	PRK07008, PRK07008, long-chain-fatty-acid--CoA lig	3e-06
cd05943	616	cd05943, AACS, Acetoacetyl-CoA synthetase (acetoac	3e-06
cd05910	455	cd05910, FACL_like_1, Uncharacterized subfamily of	3e-06
PRK07824	358	PRK07824, PRK07824, O-succinylbenzoic acid--CoA li	3e-06
PLN02479	567	PLN02479, PLN02479, acetate-CoA ligase	5e-06
PRK09192	579	PRK09192, PRK09192, acyl-CoA synthetase; Validated	6e-06
cd05967	607	cd05967, PrpE, Propionyl-CoA synthetase (PrpE)	6e-06
PRK07445	452	PRK07445, PRK07445, O-succinylbenzoic acid--CoA li	6e-06
PRK08008	517	PRK08008, caiC, putative crotonobetaine/carnitine-	7e-06
cd05974	433	cd05974, MACS_like_1, Uncharacterized subfamily of	7e-06
cd05909	489	cd05909, AAS_C, C-terminal domain of the acyl-acyl	8e-06
PRK08276	502	PRK08276, PRK08276, long-chain-fatty-acid--CoA lig	8e-06
PRK12467	3956	PRK12467, PRK12467, peptide synthase; Provisional	2e-05
PRK05857	540	PRK05857, PRK05857, acyl-CoA synthetase; Validated	3e-05
cd05924	365	cd05924, FACL_like_5, Uncharacterized subfamily of	3e-05
cd05919	436	cd05919, BCL_like, Benzoate CoA ligase (BCL) and s	4e-05
cd05958	487	cd05958, ABCL, 2-aminobenzoate-CoA ligase (ABCL)	5e-05
PRK07788	549	PRK07788, PRK07788, acyl-CoA synthetase; Validated	7e-05
PRK07798	533	PRK07798, PRK07798, acyl-CoA synthetase; Validated	8e-05
PRK06145	497	PRK06145, PRK06145, acyl-CoA synthetase; Validated	1e-04
PRK08633	1146	PRK08633, PRK08633, 2-acyl-glycerophospho-ethanola	1e-04
PRK08276	502	PRK08276, PRK08276, long-chain-fatty-acid--CoA lig	1e-04
PRK03584	655	PRK03584, PRK03584, acetoacetyl-CoA synthetase; Pr	1e-04
PRK07638	487	PRK07638, PRK07638, acyl-CoA synthetase; Validated	1e-04
PRK08043	718	PRK08043, PRK08043, bifunctional acyl-[acyl carrie	2e-04
PRK13391	511	PRK13391, PRK13391, acyl-CoA synthetase; Provision	2e-04
cd12116	438	cd12116, A_NRPS_Ta1_like, The adenylation domain o	4e-04
PRK10946	536	PRK10946, entE, enterobactin synthase subunit E; P	4e-04
TIGR02316	628	TIGR02316, propion_prpE, propionate--CoA ligase	4e-04
PRK09274	552	PRK09274, PRK09274, peptide synthase; Provisional	4e-04
cd05923	495	cd05923, CBAL, 4-Chlorobenzoate-CoA ligase (CBAL)	5e-04
PRK09029	458	PRK09029, PRK09029, O-succinylbenzoic acid--CoA li	5e-04
PRK12406	509	PRK12406, PRK12406, long-chain-fatty-acid--CoA lig	5e-04
PRK07768	545	PRK07768, PRK07768, long-chain-fatty-acid--CoA lig	5e-04
PRK13391	511	PRK13391, PRK13391, acyl-CoA synthetase; Provision	6e-04
TIGR01217	652	TIGR01217, ac_ac_CoA_syn, acetoacetyl-CoA synthase	6e-04
cd05940	444	cd05940, FATP_FACS, Fatty acid transport proteins	7e-04
cd12116	438	cd12116, A_NRPS_Ta1_like, The adenylation domain o	0.001
PRK10252	1296	PRK10252, entF, enterobactin synthase subunit F; P	0.001
cd05966	602	cd05966, ACS, Acetyl-CoA synthetase (also known as	0.001
PRK13390	501	PRK13390, PRK13390, acyl-CoA synthetase; Provision	0.001
cd05972	430	cd05972, MACS_like, Medium-chain acyl-CoA syntheta	0.002
cd05971	439	cd05971, MACS_like_3, Uncharacterized subfamily of	0.002
cd05940	444	cd05940, FATP_FACS, Fatty acid transport proteins	0.002
cd05937	468	cd05937, FATP_chFAT1_like, Uncharacterized subfami	0.002
PRK07769	631	PRK07769, PRK07769, long-chain-fatty-acid--CoA lig	0.002
PRK05691	4334	PRK05691, PRK05691, peptide synthase; Validated	0.002
cd05945	447	cd05945, DltA, D-alanine:D-alanyl carrier protein	0.003
PRK05852	534	PRK05852, PRK05852, acyl-CoA synthetase; Validated	0.003
PRK12316	5163	PRK12316, PRK12316, peptide synthase; Provisional	0.004
PRK00174	637	PRK00174, PRK00174, acetyl-CoA synthetase; Provisi	0.004
PLN03052	728	PLN03052, PLN03052, acetate--CoA ligase; Provision	0.004

>gnl|CDD|178049 PLN02430, PLN02430, long-chain-fatty-acid-CoA ligase

 Score = 1309 bits (3390), Expect = 0.0
 Identities = 518/659 (78%), Positives = 584/659 (88%)

Query: 1   MKIFAAQVEEGKEGKDGKPSVGPVYRNLLASNGFPSVDSDLNTAWDIFSMSVQKYPGNRM 60
           MK FAAQVEEG +GKDGKPSVGPVYRNLL+  GFP +DSD+ TAWDIFS SV+KYP N+M
Sbjct: 1   MKSFAAQVEEGVKGKDGKPSVGPVYRNLLSKKGFPPIDSDITTAWDIFSKSVEKYPDNKM 60

Query: 61  LGWRPFVDGKFGPYVWKTYKEVYEEVLQIVSALRASGAEPGCRVGIYGANCPQWVEAMEA 120
           LGWR  VDGK GPY+WKTYKEVYEEVLQI SALRASGAEPG RVGIYG+NCPQW+ AMEA
Sbjct: 61  LGWRRIVDGKVGPYMWKTYKEVYEEVLQIGSALRASGAEPGSRVGIYGSNCPQWIVAMEA 120

Query: 121 CNALSLICVPLYDTLGPGAVNFILDHAEIDFVFVQDKKVKELLSPDCRSAQRLRVMVCFT 180
           C A SLICVPLYDTLGPGAV++I+DHAEIDFVFVQDKK+KELL PDC+SA+RL+ +V FT
Sbjct: 121 CAAHSLICVPLYDTLGPGAVDYIVDHAEIDFVFVQDKKIKELLEPDCKSAKRLKAIVSFT 180

Query: 181 SLTAEQKEMAVQTGIKPYSWDEFLHLGKVNEMEILPPQPFNICTIMYTSGTSGDPKGVVL 240
           S+T E+ + A Q G+K YSW +FLH+GK N  E  PP+P +ICTIMYTSGTSGDPKGVVL
Sbjct: 181 SVTEEESDKASQIGVKTYSWIDFLHMGKENPSETNPPKPLDICTIMYTSGTSGDPKGVVL 240

Query: 241 THETIATFVSGVDLFLDQFEDKMTVDDVYLSFLPLAHILDRVIEEYFFRRGASVGYYHGD 300
           THE +ATFV GVDLF++QFEDKMT DDVYLSFLPLAHILDR+IEEYFFR+GASVGYYHGD
Sbjct: 241 THEAVATFVRGVDLFMEQFEDKMTHDDVYLSFLPLAHILDRMIEEYFFRKGASVGYYHGD 300

Query: 301 LNALRDDLMELKPTLLAGVPRVFEKIHEGIKKALEELRPLRRRIFDALYKYKLAWMNMGY 360
           LNALRDDLMELKPTLLAGVPRVFE+IHEGI+KAL+EL P RR IF+ALYKYKLAWMN GY
Sbjct: 301 LNALRDDLMELKPTLLAGVPRVFERIHEGIQKALQELNPRRRLIFNALYKYKLAWMNRGY 360

Query: 361 KQREASPLADLLAFRKVKARLGGRLRLVISGGAPLSTEVEEFLRVTCCAFLVQGYGLTET 420
             ++ASP+AD LAFRKVKA+LGGRLRL+ISGGAPLSTE+EEFLRVT CAF+VQGYGLTET
Sbjct: 361 SHKKASPMADFLAFRKVKAKLGGRLRLLISGGAPLSTEIEEFLRVTSCAFVVQGYGLTET 420

Query: 421 CGPTTVCFPDEMCMVGTAGPVSVYSELRLEEVPEMGYSPLDDPPCGEVCVRGKTLFSGYY 480
            GPTT+ FPDEMCM+GT G  +VY+ELRLEEVPEMGY PL +PP GE+CVRGK LFSGYY
Sbjct: 421 LGPTTLGFPDEMCMLGTVGAPAVYNELRLEEVPEMGYDPLGEPPRGEICVRGKCLFSGYY 480

Query: 481 KNPDLTRESIIDGWFHTGDIGQILPNGVVKIIDRKKNLIKISQGEYVALEYLENVYCVAP 540
           KNP+LT E + DGWFHTGDIG+ILPNGV+KIIDRKKNLIK+SQGEYVALEYLENVY   P
Sbjct: 481 KNPELTEEVMKDGWFHTGDIGEILPNGVLKIIDRKKNLIKLSQGEYVALEYLENVYGQNP 540

Query: 541 IIEDIWVYGDSLKSMLVAVVVPCEEDTKKWAYSNGHAGSFLELCSLVQLQNYILSELKNA 600
           I+EDIWVYGDS KSMLVAVVVP EE+T KWA  NG  GSF ELCSL +L+ +ILSELK+ 
Sbjct: 541 IVEDIWVYGDSFKSMLVAVVVPNEENTNKWAKDNGFTGSFEELCSLPELKEHILSELKST 600

Query: 601 AERNKLRGFEHIKGVILDPRPFDMERDLVTATLKKKRNKLLIYYQVEIDQLYEKLAPGR 659
           AE+NKLRGFE+IKGVIL+ +PFD+ERDLVTATLKK+RN LL YYQVEID++Y KLA  R
Sbjct: 601 AEKNKLRGFEYIKGVILETKPFDVERDLVTATLKKRRNNLLKYYQVEIDEMYRKLAEKR 659

Length = 660

>gnl|CDD|178452 PLN02861, PLN02861, long-chain-fatty-acid-CoA ligase

 Score =  775 bits (2002), Expect = 0.0
 Identities = 334/654 (51%), Positives = 442/654 (67%), Gaps = 5/654 (0%)

Query: 1   MKIFAAQVEEGKEGKDGKPSVGPVYRNLLASNGFPSVDSDLNTAWDIFSMSVQKYPGNRM 60
            + +  +VEE +    GKPS GPVYR++ A +G   + +D+++ W  FS +V+KYP N+M
Sbjct: 2   AETYTVKVEESRPATGGKPSAGPVYRSIYAKDGLLDLPADIDSPWQFFSDAVKKYPNNQM 61

Query: 61  LGWRPFVDGKFGPYVWKTYKEVYEEVLQIVSALRASGAEPGCRVGIYGANCPQWVEAMEA 120
           LG R   D K GPYVW TYKEVY+  ++I SA+R+ G  PG R GIYG+NCP+W+ AMEA
Sbjct: 62  LGRRQVTDSKVGPYVWLTYKEVYDAAIRIGSAIRSRGVNPGDRCGIYGSNCPEWIIAMEA 121

Query: 121 CNALSLICVPLYDTLGPGAVNFILDHAEIDFVFVQDKKVKELLS--PDCRSAQRLRVMVC 178
           CN+  +  VPLYDTLG  AV FI++HAE+   FVQ+ K+  +LS  P C S   L+ +V 
Sbjct: 122 CNSQGITYVPLYDTLGANAVEFIINHAEVSIAFVQESKISSILSCLPKCSS--NLKTIVS 179

Query: 179 FTSLTAEQKEMAVQTGIKPYSWDEFLHLGKVNEMEILPPQPFNICTIMYTSGTSGDPKGV 238
           F  +++EQKE A + G+  +SW+EF  +G ++  E+ P Q  +ICTIMYTSGT+G+PKGV
Sbjct: 180 FGDVSSEQKEEAEELGVSCFSWEEFSLMGSLD-CELPPKQKTDICTIMYTSGTTGEPKGV 238

Query: 239 VLTHETIATFVSGVDLFLDQFEDKMTVDDVYLSFLPLAHILDRVIEEYFFRRGASVGYYH 298
           +LT+  I   V   D  L   +   T +D Y S+LPLAH+ D+VIE Y   +GAS+G++ 
Sbjct: 239 ILTNRAIIAEVLSTDHLLKVTDRVATEEDSYFSYLPLAHVYDQVIETYCISKGASIGFWQ 298

Query: 299 GDLNALRDDLMELKPTLLAGVPRVFEKIHEGIKKALEELRPLRRRIFDALYKYKLAWMNM 358
           GD+  L +D+  LKPT+  GVPRV+++I+ GI + +     LR+++FD  Y YKL  +  
Sbjct: 299 GDIRYLMEDVQALKPTIFCGVPRVYDRIYTGIMQKISSGGMLRKKLFDFAYNYKLGNLRK 358

Query: 359 GYKQREASPLADLLAFRKVKARLGGRLRLVISGGAPLSTEVEEFLRVTCCAFLVQGYGLT 418
           G KQ EASP  D L F K+K  LGGR+RL++SG APL   VEEFLRVT C+ L QGYGLT
Sbjct: 359 GLKQEEASPRLDRLVFDKIKEGLGGRVRLLLSGAAPLPRHVEEFLRVTSCSVLSQGYGLT 418

Query: 419 ETCGPTTVCFPDEMCMVGTAGPVSVYSELRLEEVPEMGYSPLDDPPCGEVCVRGKTLFSG 478
           E+CG       +   MVGT G      E RLE VPEMGY  L D P GE+C+RG TLFSG
Sbjct: 419 ESCGGCFTSIANVFSMVGTVGVPMTTIEARLESVPEMGYDALSDVPRGEICLRGNTLFSG 478

Query: 479 YYKNPDLTRESIIDGWFHTGDIGQILPNGVVKIIDRKKNLIKISQGEYVALEYLENVYCV 538
           Y+K  DLT E +IDGWFHTGDIG+  PNG +KIIDRKKN+ K+SQGEYVA+E LEN Y  
Sbjct: 479 YHKRQDLTEEVLIDGWFHTGDIGEWQPNGAMKIIDRKKNIFKLSQGEYVAVENLENTYSR 538

Query: 539 APIIEDIWVYGDSLKSMLVAVVVPCEEDTKKWAYSNGHAGSFLELCSLVQLQNYILSELK 598
            P+I  IWVYG+S +S LVAVVVP  +  + WA +N   G F  LC  ++ + YIL EL 
Sbjct: 539 CPLIASIWVYGNSFESFLVAVVVPDRQALEDWAANNNKTGDFKSLCKNLKARKYILDELN 598

Query: 599 NAAERNKLRGFEHIKGVILDPRPFDMERDLVTATLKKKRNKLLIYYQVEIDQLY 652
           +  ++ +LRGFE +K + L+P PFD+ERDL+T T K KR +LL YY+  IDQLY
Sbjct: 599 STGKKLQLRGFEMLKAIHLEPNPFDIERDLITPTFKLKRPQLLKYYKDCIDQLY 652

Length = 660

>gnl|CDD|166255 PLN02614, PLN02614, long-chain acyl-CoA synthetase

 Score =  748 bits (1932), Expect = 0.0
 Identities = 341/661 (51%), Positives = 463/661 (70%), Gaps = 4/661 (0%)

Query: 2   KIFAAQVEEGKEGKDGKPSVGPVYRNLLASNGFPSVDSDLNTAWDIFSMSVQKYPGNRML 61
           K F  QVEEGKEG DG+PSVGPVYR++ A +GFP+    +++ WD+F MSV+KYP N ML
Sbjct: 5   KKFIFQVEEGKEGSDGRPSVGPVYRSIFAKDGFPNPIEGMDSCWDVFRMSVEKYPNNPML 64

Query: 62  GWRPFVDGKFGPYVWKTYKEVYEEVLQIVSALRASGAEPGCRVGIYGANCPQWVEAMEAC 121
           G R  VDGK G YVW+TY+EVY+ V+++ ++LR+ G +   + GIYGAN P+W+ +MEAC
Sbjct: 65  GRREIVDGKPGKYVWQTYQEVYDIVIKLGNSLRSVGVKDEAKCGIYGANSPEWIISMEAC 124

Query: 122 NALSLICVPLYDTLGPGAVNFILDHAEIDFVFVQDKKVKELLSPDCRSAQRLRVMVCFTS 181
           NA  L CVPLYDTLG GAV FI+ H+E+  VFV++KK+ EL      S + ++ +V F  
Sbjct: 125 NAHGLYCVPLYDTLGAGAVEFIISHSEVSIVFVEEKKISELFKTCPNSTEYMKTVVSFGG 184

Query: 182 LTAEQKEMAVQTGIKPYSWDEFLHLGKVNEMEILPPQPFNICTIMYTSGTSGDPKGVVLT 241
           ++ EQKE A   G+  Y+WDEFL LG+  + ++   +  +ICTIMYTSGT+GDPKGV+++
Sbjct: 185 VSREQKEEAETFGLVIYAWDEFLKLGEGKQYDLPIKKKSDICTIMYTSGTTGDPKGVMIS 244

Query: 242 HETIATFVSGVDLFLDQFEDKMTVDDVYLSFLPLAHILDRVIEEYFFRRGASVGYYHGDL 301
           +E+I T ++GV   L      +TV DVYLS+LPLAHI DRVIEE F + GA++G++ GD+
Sbjct: 245 NESIVTLIAGVIRLLKSANAALTVKDVYLSYLPLAHIFDRVIEECFIQHGAAIGFWRGDV 304

Query: 302 NALRDDLMELKPTLLAGVPRVFEKIHEGIKKALEELRPLRRRIFDALYKYKLAWMNMGYK 361
             L +DL ELKPT+   VPRV ++++ G++K L +   L++ +FD+ + YK   M  G  
Sbjct: 305 KLLIEDLGELKPTIFCAVPRVLDRVYSGLQKKLSDGGFLKKFVFDSAFSYKFGNMKKGQS 364

Query: 362 QREASPLADLLAFRKVKARLGGRLRLVISGGAPLSTEVEEFLRVTCCAFLVQGYGLTETC 421
             EASPL D L F KVK  LGG +R+++SG APL++ VE FLRV  C  ++QGYGLTE+C
Sbjct: 365 HVEASPLCDKLVFNKVKQGLGGNVRIILSGAAPLASHVESFLRVVACCHVLQGYGLTESC 424

Query: 422 GPTTVCFPDEMCMVGTAGPVSVYSELRLEEVPEMGYSPLDDPPCGEVCVRGKTLFSGYYK 481
             T V  PDE+ M+GT GP     ++RLE VPEM Y  L   P GE+C+RGKTLFSGYYK
Sbjct: 425 AGTFVSLPDELDMLGTVGPPVPNVDIRLESVPEMEYDALASTPRGEICIRGKTLFSGYYK 484

Query: 482 NPDLTRESIIDGWFHTGDIGQILPNGVVKIIDRKKNLIKISQGEYVALEYLENVYCVAPI 541
             DLT+E +IDGW HTGD+G+  PNG +KIIDRKKN+ K+SQGEYVA+E +EN+Y     
Sbjct: 485 REDLTKEVLIDGWLHTGDVGEWQPNGSMKIIDRKKNIFKLSQGEYVAVENIENIYGEVQA 544

Query: 542 IEDIWVYGDSLKSMLVAVVVPCEEDTKKWAYSNGHAGSFLELCSLVQLQNYILSELKNAA 601
           ++ +WVYG+S +S LVA+  P ++  ++WA  NG +G +  LC   + + +IL EL   A
Sbjct: 545 VDSVWVYGNSFESFLVAIANPNQQILERWAAENGVSGDYNALCQNEKAKEFILGELVKMA 604

Query: 602 ERNKLRGFEHIKGVILDPRPFDMERDLVTATLKKKRNKLLIYYQVEIDQLY----EKLAP 657
           +  K++GFE IK + LDP PFDMERDL+T T KKKR +LL YYQ  ID++Y    EKLA 
Sbjct: 605 KEKKMKGFEIIKAIHLDPVPFDMERDLLTPTFKKKRPQLLKYYQSVIDEMYKTTNEKLAS 664

Query: 658 G 658
            
Sbjct: 665 R 665

Length = 666

>gnl|CDD|213293 cd05927, LC-FACS_euk, Eukaryotic long-chain fatty acid CoA synthetase (LC-FACS)

 Score =  738 bits (1909), Expect = 0.0
 Identities = 275/583 (47%), Positives = 365/583 (62%), Gaps = 46/583 (7%)

Query: 72  GPYVWKTYKEVYEEVLQIVSALRASGAEPGCRVGIYGANCPQWVEAMEACNALSLICVPL 131
           GPY W +YKEV E  L I S LRA G +PG ++GI+  N P+W+   +AC + SL+ VPL
Sbjct: 1   GPYEWISYKEVEERALNIGSGLRALGLKPGDKIGIFAENRPEWIITEQACFSQSLVIVPL 60

Query: 132 YDTLGPGAVNFILDHAEIDFVFVQDKKVKELLSPDCRSAQRLRVMVCFTSLTAEQKEMAV 191
           YDTLG  A+ +IL+  EI  VF    KV                                
Sbjct: 61  YDTLGEEAIEYILNETEISIVFCDAVKV-------------------------------- 88

Query: 192 QTGIKPYSWDEFLHLGKVNEMEILPPQPFNICTIMYTSGTSGDPKGVVLTHETIATFVSG 251
                 YS++E   LGK N++   PP+P ++ TIMYTSGT+G+PKGV+LTH  I   V+G
Sbjct: 89  ------YSFEELEELGKKNKVPPTPPKPEDLATIMYTSGTTGNPKGVMLTHGNIVAGVAG 142

Query: 252 VDLFLDQFEDKMTVDDVYLSFLPLAHILDRVIEEYFFRRGASVGYYHGDLNALRDDLMEL 311
           ++  + +F   +   DVY+S+LPLAHI +RV+E      G  +GYY GD   L+ D+ EL
Sbjct: 143 INKIVPEF---IGPTDVYISYLPLAHIFERVVENVCLYIGGRIGYYSGDTRGLKGDIKEL 199

Query: 312 KPTLLAGVPRVFEKIHEGIKKALEELRPLRRRIFDALYKYKLAWMNMGYKQREASPLADL 371
           KPT+  GVPRV ++I++GI   +     L+R +F+  Y YKLA +  G     ASPL D 
Sbjct: 200 KPTVFVGVPRVLDRIYKGILAKVNAKGGLKRTLFNFAYNYKLAALRRG--HGYASPLWDK 257

Query: 372 LAFRKVKARLGGRLRLVISGGAPLSTEVEEFLRVTCCAFLVQGYGLTETCGPTTVCFPDE 431
           L F+K+KA LGGR+RL++SGGAPLS + +EFLRV     ++QGYGLTETC   T+  P +
Sbjct: 258 LVFKKIKAALGGRVRLMLSGGAPLSPDTQEFLRVALGCPVLQGYGLTETCAGGTLSDPGD 317

Query: 432 MCMVGTAGPVSVYSELRLEEVPEMGYSPLDDPPCGEVCVRGKTLFSGYYKNPDLTRESI- 490
               G  GP     E++L +VPEMGY   DDPP GE+C+RG  +F GYYKNP+ T E+  
Sbjct: 318 TT-TGHVGPPLPCCEIKLVDVPEMGYFAKDDPPRGEICIRGPNVFKGYYKNPEKTAEAFD 376

Query: 491 IDGWFHTGDIGQILPNGVVKIIDRKKNLIKISQGEYVALEYLENVYCVAPIIEDIWVYGD 550
            DGWFHTGDIG+ LP+G +KIIDRKKNL K+SQGEYVALE LEN+Y  +P+++ I VYGD
Sbjct: 377 EDGWFHTGDIGEWLPDGTLKIIDRKKNLFKLSQGEYVALEKLENIYKSSPLVDQICVYGD 436

Query: 551 SLKSMLVAVVVPCEEDTKKWAYSNGHA-GSFLELCSLVQLQNYILSELKNAAERNKLRGF 609
           SLKS LVA+VVP E+  +KWA  NG   G F ELC+  +L+  IL +L    + N L+GF
Sbjct: 437 SLKSFLVAIVVPDEDVLEKWAAENGGGGGDFEELCNNKKLKKAILKDLNEIGKENGLKGF 496

Query: 610 EHIKGVILDPRPFDMERDLVTATLKKKRNKLLIYYQVEIDQLY 652
           E +K + L P PF  E  L+T T K KR +L   Y+ EID++Y
Sbjct: 497 EIVKAIHLTPEPFTPENGLLTPTFKLKRPQLKKRYKKEIDEMY 539

The members of this family are eukaryotic fatty acid CoA synthetases that activate fatty acids with chain lengths of 12 to 20. LC-FACS catalyzes the formation of fatty acyl-CoA in a two-step reaction: the formation of a fatty acyl-AMP molecule as an intermediate, and the formation of a fatty acyl-CoA. This is a required step before free fatty acids can participate in most catabolic and anabolic reactions. Organisms tend to have multiple isoforms of LC-FACS genes with multiple splice variants. For example, nine genes are found in Arabidopsis and six genes are expressed in mammalian cells. Length = 539

>gnl|CDD|178337 PLN02736, PLN02736, long-chain acyl-CoA synthetase

 Score =  545 bits (1406), Expect = 0.0
 Identities = 258/643 (40%), Positives = 365/643 (56%), Gaps = 24/643 (3%)

Query: 24  VYRNLLAS----NGFPSVDSDLNTAWDIFSMSVQKYPGNRMLGWRPFVDGKFGPYVWKTY 79
           VYR+  +     + FP    ++ T  D F  +V+ +   + LG R  VDG  G Y W TY
Sbjct: 23  VYRSARSPLKLVSRFPDHP-EIGTLHDNFVYAVETFRDYKYLGTRIRVDGTVGEYKWMTY 81

Query: 80  KEVYEEVLQIVSALRASGAEPGCRVGIYGANCPQWVEAMEACNALSLICVPLYDTLGPGA 139
            E       I S L   G   G  VG+Y  N P+W+    AC+A S + VPLYDTLGP A
Sbjct: 82  GEAGTARTAIGSGLVQHGIPKGACVGLYFINRPEWLIVDHACSAYSYVSVPLYDTLGPDA 141

Query: 140 VNFILDHAEIDFVFVQDKKVKELLS--PDCRSAQRLRVMVCFTSLTAEQKEMAVQTGIKP 197
           V FI++HAE+  +F   + +  LLS   +  S   +R++V           +   TG++ 
Sbjct: 142 VKFIVNHAEVAAIFCVPQTLNTLLSCLSEIPS---VRLIVVVGGADEPLPSLPSGTGVEI 198

Query: 198 YSWDEFLHLGKVNEMEILPPQPFNICTIMYTSGTSGDPKGVVLTHETIATFVSGVDLFLD 257
            ++ + L  G+ +     PP+P ++ TI YTSGT+G PKGVVLTH  +   V+G  L   
Sbjct: 199 VTYSKLLAQGRSSPQPFRPPKPEDVATICYTSGTTGTPKGVVLTHGNLIANVAGSSLSTK 258

Query: 258 QFEDKMTVDDVYLSFLPLAHILDRVIEEYFFRRGASVGYYHGDLNALRDDLMELKPTLLA 317
            +       DV++S+LPLAHI +RV +      G +VG+Y GD   L DDL  L+PT+  
Sbjct: 259 FY-----PSDVHISYLPLAHIYERVNQIVMLHYGVAVGFYQGDNLKLMDDLAALRPTIFC 313

Query: 318 GVPRVFEKIHEGIKKALEELRPLRRRIFDALYKYKLAWMNMGYKQREASPLADLLAFRKV 377
            VPR++ +I++GI  A++E   L+ R+F+A Y  K   +  G   +  SP+ D L F K+
Sbjct: 314 SVPRLYNRIYDGITNAVKESGGLKERLFNAAYNAKKQALENG---KNPSPMWDRLVFNKI 370

Query: 378 KARLGGRLRLVISGGAPLSTEVEEFLRVTCCAFLVQGYGLTET-CGPTTVCFPDEMCMVG 436
           KA+LGGR+R + SG +PLS +V EFLR+     +++GYG+TET C  + +   D +   G
Sbjct: 371 KAKLGGRVRFMSSGASPLSPDVMEFLRICFGGRVLEGYGMTETSCVISGMDEGDNLS--G 428

Query: 437 TAGPVSVYSELRLEEVPEMGYSPLDDP-PCGEVCVRGKTLFSGYYKNPDLTRESI-IDGW 494
             G  +   E++L +VPEM Y+  D P P GE+CVRG  +F GYYK+   TRE I  DGW
Sbjct: 429 HVGSPNPACEVKLVDVPEMNYTSEDQPYPRGEICVRGPIIFKGYYKDEVQTREVIDEDGW 488

Query: 495 FHTGDIGQILPNGVVKIIDRKKNLIKISQGEYVALEYLENVYCVAPIIEDIWVYGDSLKS 554
            HTGDIG  LP G +KIIDRKKN+ K++QGEY+A E +ENVY     +   +VYGDSL S
Sbjct: 489 LHTGDIGLWLPGGRLKIIDRKKNIFKLAQGEYIAPEKIENVYAKCKFVAQCFVYGDSLNS 548

Query: 555 MLVAVVVPCEEDTKKWAYSNGH-AGSFLELCSLVQLQNYILSELKNAAERNKLRGFEHIK 613
            LVAVVV   E  K WA S G       +LC+  +++  +L+++       +LRGFE  K
Sbjct: 549 SLVAVVVVDPEVLKAWAASEGIKYEDLKQLCNDPRVRAAVLADMDAVGREAQLRGFEFAK 608

Query: 614 GVILDPRPFDMERDLVTATLKKKRNKLLIYYQVEIDQLYEKLA 656
            V L P PF +E  L+T T K KR +   Y+   I  +Y +LA
Sbjct: 609 AVTLVPEPFTVENGLLTPTFKVKRPQAKAYFAKAISDMYAELA 651

Length = 651

>gnl|CDD|223953 COG1022, FAA1, Long-chain acyl-CoA synthetases (AMP-forming) [Lipid metabolism]

 Score =  458 bits (1180), Expect = e-154
 Identities = 214/599 (35%), Positives = 316/599 (52%), Gaps = 46/599 (7%)

Query: 72  GPYVWKTYKEVYEEVLQIVSALRASGAEPGCRVGIYGANCPQWVEAMEACNALSLICVPL 131
           G +   TY+E+YE V  + S L + G   G RV I+ AN P+W  A  A  AL  + VP+
Sbjct: 41  GGWEAITYRELYERVRALASGLLSLGIPAGDRVAIFAANRPEWAIADLAILALGAVSVPI 100

Query: 132 YDTLGPGAVNFILDHAEIDFVFVQD----KKVKELLSPDCRSAQRLRVMVCFTSLTAEQK 187
           Y T  P  + +IL+ +E   +FV++      V  +L  DC     L V++       E K
Sbjct: 101 YSTSTPEQLAYILNESESKVIFVENQELLDLVLPVLE-DCPKVVDLIVIIDLVREAVEAK 159

Query: 188 EMAVQTGIKPYSWDEFLHLGKVNEM----EILPPQPFNICTIMYTSGTSGDPKGVVLTHE 243
            +     +     DE + L  ++       I PP+P ++ TI+YTSGT+G PKGV+LTH 
Sbjct: 160 AL-----VLEVFPDEGISLFLIDSAGLEGRIAPPKPDDLATIIYTSGTTGTPKGVMLTHR 214

Query: 244 TIATFVSGVDLFLDQFEDKMTVDDVYLSFLPLAHILDRVIE-EYFFRRGASVGYYHGDLN 302
            +   V+G+D  L          D  LSFLPLAHI +R  E       G +V +   D  
Sbjct: 215 NLLAQVAGIDEVLPPI----GPGDRVLSFLPLAHIFERAFEGGLALYGGVTVLFK-EDPR 269

Query: 303 ALRDDLMELKPTLLAGVPRVFEKIHEGIKKALEELRPLRRRIFDALYKYKLAWMNM---G 359
            L +DL E++PT++ GVPRV+EK+++GI + + +   +RR++F    K     ++    G
Sbjct: 270 TLLEDLKEVRPTVMIGVPRVWEKVYKGIMEKVAKAPAVRRKLFRWALKVAYKKISRALLG 329

Query: 360 YKQREASPLADLLAFRKVKARLGGRLRLVISGGAPLSTEVEEFLR-VTCCAFLVQGYGLT 418
                   +AD L FRK++  LGGR+R  +SGGAPLS E+  F R +     +++GYGLT
Sbjct: 330 GGPLSWLLVADRLVFRKIRDALGGRIRYALSGGAPLSPELLHFFRSLGIP--ILEGYGLT 387

Query: 419 ETCGPTTVCFPDEMCMVGTAGPVSVYSELRLEEVPEMGYSPLDDPPCGEVCVRGKTLFSG 478
           ET    +V  PD   ++GT G      E+++ +              GE+ VRG  +  G
Sbjct: 388 ETSAVVSVNPPDRF-VLGTVGKPLPGIEVKIADD-------------GEILVRGPNVMKG 433

Query: 479 YYKNPDLTRESII-DGWFHTGDIGQILPNGVVKIIDRKKNLIKISQGEYVALEYLENVYC 537
           YYKNP+ T E+   DGWF TGD+G++  +G + I  RKK LIK+S G+ +A E +E+   
Sbjct: 434 YYKNPEATAEAFTEDGWFRTGDLGELDEDGYLVITGRKKELIKLSNGKNIAPEPIESKLA 493

Query: 538 VAPIIEDIWVYGDSLKSMLVAVVVPCEEDTKKWAYSNGHA--GSFLELCSLVQLQNYILS 595
            +P+IE I V GD  K  LVA++VP  +  +KWA S       S  EL    +L   IL 
Sbjct: 494 KSPLIEQICVVGDD-KKFLVALIVPDFDALEKWAESLNKVISASREELARDPKLLKLILP 552

Query: 596 ELKNAAERNKLRGFEHIKGVILDPRPFDMERDLVTATLKKKRNKLLIYYQVEIDQLYEK 654
            +       +L GFE IK  +L P+ F  E   +T TLK KR+ +L  Y+ EI+ +Y +
Sbjct: 553 RVNKGN--KRLFGFEQIKKFVLLPKEFTPENGELTPTLKLKRHVILDRYKDEIEAVYSR 609

Length = 613

>gnl|CDD|213275 cd05907, VL_LC_FACS_like, Long-chain fatty acid CoA synthetases and Bubblegum-like very long-chain fatty acid CoA synthetases

 Score =  363 bits (933), Expect = e-119
 Identities = 178/575 (30%), Positives = 263/575 (45%), Gaps = 125/575 (21%)

Query: 72  GPYVWKTYKEVYEEVLQIVSALRASGAEPGCRVGIYGANCPQWVEAMEACNALSLICVPL 131
           G +   T+ E+ E V ++ + L A G +PG RV I   N P+WV A  A  A   + VP+
Sbjct: 1   GIWQTITWAELAERVRRLAAGLIALGVKPGDRVAILAENRPEWVIADLAILAAGAVPVPI 60

Query: 132 YDTLGPGAVNFILDHAEIDFVFVQDKKVKELLSPDCRSAQRLRVMVCFTSLTAEQKEMAV 191
           Y T  P  V +IL+ +    VFV+DK       PD      L  ++ +TS T        
Sbjct: 61  YPTSSPEEVAYILNDSGARVVFVEDK-------PD-----DLATLI-YTSGT-------- 99

Query: 192 QTGIKPYSWDEFLHLGKVNEMEILPPQPFNICTIMYTSGTSGDPKGVVLTHETIATFVSG 251
            TG                                       +PKGV+LTH  +    + 
Sbjct: 100 -TG---------------------------------------NPKGVMLTHRNLLAQAAA 119

Query: 252 VDLFLDQFEDKMTVDDVYLSFLPLAHILDRVIEEYF-FRRGASVGYYHGDLNALRDDLME 310
           +   +      ++  D  LSFLPLAH+ ++ + EY     GA V  +      L +DL E
Sbjct: 120 LLEVIP-----LSPGDRVLSFLPLAHVFEQRLGEYLPLSSGARV-NFAESPETLLEDLRE 173

Query: 311 LKPTLLAGVPRVFEKIHEGIKKALEELRPLRRRIFDALYKYKLAWMNMGYKQREASPLAD 370
           ++PT+   VPRV+EKI+ GI+  +    PL+R++F                         
Sbjct: 174 VRPTVFFAVPRVWEKIYAGIEAKVAAAGPLKRKLFRW----------------------- 210

Query: 371 LLAFRKVKARLGGRLRLVISGGAPLSTEVEEFLR---VTCCAFLVQGYGLTETCGPTTVC 427
                   A  GGRLR  +SGGAPL  EV EF R   +     +++GYGLTET G  TV 
Sbjct: 211 --------ALGGGRLRFAVSGGAPLPPEVLEFFRALGIP----ILEGYGLTETSGVATVN 258

Query: 428 FPDEMCMVGTAGPVSVYSELRLEEVPEMGYSPLDDPPCGEVCVRGKTLFSGYYKNPDLTR 487
            P ++ + GT G      E+R+ E              GE+ VRG  +  GYYKNP+ T 
Sbjct: 259 RPGDIRI-GTVGKPLPGVEVRIAED-------------GEILVRGPNVMKGYYKNPEATA 304

Query: 488 ESII-DGWFHTGDIGQILPNGVVKIIDRKKNLIKISQGEYVALEYLENVYCVAPIIEDIW 546
           E++  DGW HTGDIG++  +G + I DRKK+LI  + G+ +A + +EN    +P I    
Sbjct: 305 EALDEDGWLHTGDIGRLDEDGFLVITDRKKDLIVTAGGKNIAPQPIENALKASPYISQAV 364

Query: 547 VYGDSLKSMLVAVVVPCEEDTKKWAYSNG-HAGSFLELCSLVQLQNYILSELKNAAERNK 605
           V GD     L A++V   E  +KWA  +G    ++ +L    +++  I  E+   A    
Sbjct: 365 VVGDDRPY-LTALIVLDPEALEKWAEQHGLPFTTYADLAEDPEVRALIRKEV-EEANARL 422

Query: 606 LRGFEHIKGVILDPRPFDMERDLVTATLKKKRNKL 640
            R  E IK  +L P+ F +E   +T T+K +R  +
Sbjct: 423 AR-VEQIKKFVLLPKEFSIEDGELTPTMKLRRRVV 456

This family includes long-chain fatty acid (C12-C20) CoA synthetases and Bubblegum-like very long-chain (>C20) fatty acid CoA synthetases. FACS catalyzes the formation of fatty acyl-CoA in a two-step reaction: the formation of a fatty acyl-AMP molecule as an intermediate, and the formation of a fatty acyl-CoA. Eukaryotes generally have multiple isoforms of LC-FACS genes with multiple splice variants. For example, nine genes are found in Arabidopsis and six genes are expressed in mammalian cells. Drosophila melanogaster mutant bubblegum (BGM) have elevated levels of very-long-chain fatty acids (VLCFA) caused by a defective gene later named bubblegum. The human homolog (hsBG) of bubblegum has been characterized as a very long chain fatty acid CoA synthetase that functions specifically in the brain; hsBG may play a central role in brain VLCFA metabolism and myelinogenesis. Free fatty acids must be "activated" to their CoA thioesters before participating in most catabolic and anabolic reactions. Length = 456

>gnl|CDD|215217 PLN02387, PLN02387, long-chain-fatty-acid-CoA ligase family protein

 Score =  358 bits (921), Expect = e-114
 Identities = 225/662 (33%), Positives = 338/662 (51%), Gaps = 64/662 (9%)

Query: 41  LNTAWD-------IFSMSVQKYPGNRMLGWRPFV--------DGK------FGPYVWKTY 79
           + T W+       +F  S +KY   R+LG R  +        DG+       G Y W TY
Sbjct: 50  VETPWEGATTLAALFEQSCKKYSDKRLLGTRKLISREFETSSDGRKFEKLHLGEYEWITY 109

Query: 80  KEVYEEVLQIVSALRASGAEPGCRVGIYGANCPQWVEAMEACNALSLICVPLYDTLGPGA 139
            +V+E V    S L A G     RV I+     +W+ A++ C   ++  V +Y +LG  A
Sbjct: 110 GQVFERVCNFASGLVALGHNKEERVAIFADTRAEWLIALQGCFRQNITVVTIYASLGEEA 169

Query: 140 VNFILDHAEIDFVFVQDKKVKELLSPDCRSAQRLRVMVCFTSLTAEQKEMAVQTG-IKPY 198
           +   L+  E+  V    K++K+L+    +     RV +       +       +      
Sbjct: 170 LCHSLNETEVTTVICDSKQLKKLIDISSQLETVKRV-IYMDDEGVDSDSSLSGSSNWTVS 228

Query: 199 SWDEFLHLGKVNEMEILPPQPFNICTIMYTSGTSGDPKGVVLTHETIATFVSGVDLFLDQ 258
           S+ E   LGK N ++   P P +I  IMYTSG++G PKGV++TH  I   V+GV      
Sbjct: 229 SFSEVEKLGKENPVDPDLPSPNDIAVIMYTSGSTGLPKGVMMTHGNIVATVAGV------ 282

Query: 259 FEDKMTV------DDVYLSFLPLAHILDRVIEEYFFRRGASVGYYHGDLNALRD------ 306
               MTV      +DVYL++LPLAHIL+   E      GA++GY  G    L D      
Sbjct: 283 ----MTVVPKLGKNDVYLAYLPLAHILELAAESVMAAVGAAIGY--GSPLTLTDTSNKIK 336

Query: 307 -----DLMELKPTLLAGVPRVFEKIHEGIKKALEELRPLRRRIFDALYKYKLAWMN---M 358
                D   LKPTL+  VP + +++ +G++K ++    L +++FD  YK +LA +     
Sbjct: 337 KGTKGDASALKPTLMTAVPAILDRVRDGVRKKVDAKGGLAKKLFDIAYKRRLAAIEGSWF 396

Query: 359 GYKQREASPLADLLAFRKVKARLGGRLRLVISGGAPLSTEVEEFLRVTCCAFLVQGYGLT 418
           G    E   L D L F+K++A LGGR+R ++SGGAPLS + + F+ +   A + QGYGLT
Sbjct: 397 GAWGLEKL-LWDALVFKKIRAVLGGRIRFMLSGGAPLSGDTQRFINICLGAPIGQGYGLT 455

Query: 419 ETCGPTTVCFPDEMCMVGTAGPVSVYSELRLEEVPEMGYSPLDDP-PCGEVCVRGKTLFS 477
           ETC   T    D+   VG  GP      ++L    E GY   D P P GE+ + G ++  
Sbjct: 456 ETCAGATFSEWDDTS-VGRVGPPLPCCYVKLVSWEEGGYLISDKPMPRGEIVIGGPSVTL 514

Query: 478 GYYKNPDLTRESI-IDG----WFHTGDIGQILPNGVVKIIDRKKNLIKISQGEYVALEYL 532
           GY+KN + T E   +D     WF+TGDIGQ  P+G ++IIDRKK+++K+  GEYV+L  +
Sbjct: 515 GYFKNQEKTDEVYKVDERGMRWFYTGDIGQFHPDGCLEIIDRKKDIVKLQHGEYVSLGKV 574

Query: 533 ENVYCVAPIIEDIWVYGDSLKSMLVAVVVPCEEDTKKWAYSNGHA-GSFLELCSLVQLQN 591
           E    V+P +++I V+ D   S  VA+VVP ++  +KWA   G    +F ELC   +   
Sbjct: 575 EAALSVSPYVDNIMVHADPFHSYCVALVVPSQQALEKWAKKAGIDYSNFAELCEKEEAVK 634

Query: 592 YILSELKNAAERNKLRGFEHIKGVILDPRPFDMERDLVTATLKKKRNKLLIYYQVEIDQL 651
            +   L  AA+  +L  FE    + L P P+  E  LVTA LK KR ++   ++ ++ +L
Sbjct: 635 EVQQSLSKAAKAARLEKFEIPAKIKLLPEPWTPESGLVTAALKLKREQIRKKFKDDLKKL 694

Query: 652 YE 653
           YE
Sbjct: 695 YE 696

Length = 696

>gnl|CDD|240316 PTZ00216, PTZ00216, acyl-CoA synthetase; Provisional

 Score =  331 bits (852), Expect = e-104
 Identities = 183/602 (30%), Positives = 281/602 (46%), Gaps = 50/602 (8%)

Query: 78  TYKEVYEEVLQIVSALRASGAEPGCRVGIYGANCPQWVEAMEACNALSLICVPLYDTLGP 137
           TY E++E ++     L   G   G  V IY     +W+ ++    + S++   +Y  LG 
Sbjct: 123 TYAELWERIVNFGRGLAELGLTKGSNVAIYEETRWEWLASIYGIWSQSMVAATVYANLGE 182

Query: 138 GAVNFILDHAEIDFVFVQDKKVKELLS-------PDCRSAQRLRVMVCFTSLTAEQKEMA 190
            A+ + L   E   +    K V  LL        P+         ++   SL A      
Sbjct: 183 DALAYALRETECKAIVCNGKNVPNLLRLMKSGGMPNT-------TIIYLDSLPASVDTEG 235

Query: 191 VQTGIKPYSWDEFLHLGKVNEMEILPPQPFN---ICTIMYTSGTSGDPKGVVLTHETIAT 247
            +      +W + +  G           P N   +  IMYTSGT+GDPKGV+ TH ++  
Sbjct: 236 CRL----VAWTDVVAKGHSAGSHHPLNIPENNDDLALIMYTSGTTGDPKGVMHTHGSLTA 291

Query: 248 FVSGVDLFLDQFEDKMTVDDVYLSFLPLAHILDRVIEEYFFRRGASVGYYHGDLNALRD- 306
            +  ++  L+        D+ Y S+LPLAHI++  +   F  RGA +G+  G    L D 
Sbjct: 292 GILALEDRLNDLIGPPEEDETYCSYLPLAHIMEFGVTNIFLARGALIGF--GSPRTLTDT 349

Query: 307 ------DLMELKPTLLAGVPRVFEKIHEGIKKALEELRP----LRRRIFDALYKYKLAWM 356
                 DL E +P  L GVPR+F+     IKKA+E   P    L+RR+FD  Y+ +L  +
Sbjct: 350 FARPHGDLTEFRPVFLIGVPRIFDT----IKKAVEAKLPPVGSLKRRVFDHAYQSRLRAL 405

Query: 357 NMGYKQREASPLADLLAFRKVKARLGGRLRLVISGGAPLSTEVEEFLRVTCCAFLVQGYG 416
             G      +P  +   F   +A LGGR+R ++SGG PLS   +EF+ V     ++QG+G
Sbjct: 406 KEGKD----TPYWNEKVFSAPRAVLGGRVRAMLSGGGPLSAATQEFVNV-VFGMVIQGWG 460

Query: 417 LTETCGPTTVCFPDEMCMVGTAGPVSVYSELRLEEVPEMGYSPLDDP-PCGEVCVRGKTL 475
           LTET     +    ++      G +    E++L +  E  Y   D P P GE+ +RG  L
Sbjct: 461 LTETVCCGGIQRTGDL-EPNAVGQLLKGVEMKLLDTEE--YKHTDTPEPRGEILLRGPFL 517

Query: 476 FSGYYKNPDLTRESII-DGWFHTGDIGQILPNGVVKIIDRKKNLIKISQGEYVALEYLEN 534
           F GYYK  +LTRE +  DGWFHTGD+G I  NG ++II R K L K   GEY+ALE LE 
Sbjct: 518 FKGYYKQEELTREVLDEDGWFHTGDVGSIAANGTLRIIGRVKALAKNCLGEYIALEALEA 577

Query: 535 VYCVAPII--EDIWVYGDSLKSMLVAVVVPCEEDTKKWAYSNGHAGSFLELCSLVQLQNY 592
           +Y    ++    + V     +S + A+V+  E     +A  +G  G +  +    + Q  
Sbjct: 578 LYGQNELVVPNGVCVLVHPARSYICALVLTDEAKAMAFAKEHGIEGEYPAILKDPEFQKK 637

Query: 593 ILSELKNAAERNKLRGFEHIKGVILDPRPFDMERDLVTATLKKKRNKLLIYYQVEIDQLY 652
               L+  A     + FE ++ V +    +  E  ++TA +K KR  +   Y   I +L+
Sbjct: 638 ATESLQETARAAGRKSFEIVRHVRVLSDEWTPENGVLTAAMKLKRRVIDERYADLIKELF 697

Query: 653 EK 654
             
Sbjct: 698 AD 699

Length = 700

>gnl|CDD|215954 pfam00501, AMP-binding, AMP-binding enzyme

 Score =  279 bits (717), Expect = 8e-88
 Identities = 125/478 (26%), Positives = 194/478 (40%), Gaps = 74/478 (15%)

Query: 78  TYKEVYEEVLQIVSALRASGAEPGCRVGIYGANCPQWVEAMEACNALSLICVPLYDTLGP 137
           TY+E+ E   ++ +ALRA G  PG RV I   N P+WV A+ A        VPL  +L  
Sbjct: 1   TYRELDERANRLAAALRALGVGPGDRVAILLPNSPEWVVAILAVLKAGAAYVPLDPSLPA 60

Query: 138 GAVNFILDHAEIDFVFVQDKKVKELLSPDCRSAQRLRVMVCFTSLTAEQKEMAVQTGIKP 197
             + +IL+ +E   +   D+ + +LL    +    L +++                G   
Sbjct: 61  ERLAYILEDSEAKVLITDDELLPKLLEVLLKLLVLLALIIVGD------------DGEGL 108

Query: 198 YSWDEFLHLGKVNEMEILPPQPFNICTIMYTSGTSGDPKGVVLTHETIATFVSGVDLFLD 257
              D+ L  G   E    P  P ++  I+YTSGT+G PKGV+LTH  +    +G+     
Sbjct: 109 DLLDDELLAGASAEPPAPPVDPDDLAYIIYTSGTTGKPKGVMLTHRNLLALAAGLAERF- 167

Query: 258 QFEDKMTVDDVYLSFLPLAHILDRVIEEYFFRRGASVGYYHG---DLNALRDDLMELKPT 314
                +T  D  L  LPL               G ++        D   L D + + K T
Sbjct: 168 ----GLTPGDRVLLLLPLHFDGSVWEIFGPLLAGGTLVLVPKFTLDPARLLDLIEKYKVT 223

Query: 315 LLAGVPRVFEKIHEGIKKALEELRPLRRRIFDALYKYKLAWMNMGYKQREASPLADLLAF 374
           +L GVP +   + +  ++   +L                                     
Sbjct: 224 VLYGVPTLLRLLLKAPEEKKYDLS------------------------------------ 247

Query: 375 RKVKARLGGRLRLVISGGAPLSTEV-EEFLRVTCCAFLVQGYGLTETCGPTTVCFPDEMC 433
                     LRLV+SGG PL  E+            LV GYG TET    T   P +  
Sbjct: 248 ---------SLRLVLSGGEPLPPELLRRLRERFGGVPLVNGYGPTETTVVATANLPGDPE 298

Query: 434 M-VGTAGPVSVYSELRLEEVPEMGYSPLDDPPCGEVCVRGKTLFSGYYKNPDLTRESII- 491
           +  G+ G       + ++ + E G  P+     GE+C+RG  +  GY  +P+LT E  + 
Sbjct: 299 VKPGSIGR--PLPGVEVKVLDEEG-EPVPPGEVGELCIRGPGVARGYLNDPELTAERFVE 355

Query: 492 DGWF--HTGDIGQILPNGVVKIIDRKKNLIKISQGEYVALEYLENVYCVAPIIEDIWV 547
           DGW    TGD+G+   +G ++I+ RK + +KI  GE +    +E V    P + +  V
Sbjct: 356 DGWGMYRTGDLGRWDEDGYLEILGRKDDQVKIR-GERIEPGEIEAVLLEHPGVAEAAV 412

Length = 412

>gnl|CDD|213298 cd05932, LC_FACS_bac, Bacterial long-chain fatty acid CoA synthetase (LC-FACS), including Marinobacter hydrocarbonoclasticus isoprenoid Coenzyme A synthetase

 Score =  278 bits (714), Expect = 3e-86
 Identities = 170/592 (28%), Positives = 263/592 (44%), Gaps = 111/592 (18%)

Query: 68  DGKFGPYVWKTYKEVYEEVLQIVSALRASGAEPGCRVGIYGANCPQWVEAMEACNALSLI 127
            G++  Y   T+ +V ++  +I +AL++ G EPG R+ I   NC +W+ A  A      +
Sbjct: 1   GGQWHEY---TWAQVADQARRIAAALQSLGLEPGDRIAILSKNCAEWIIADLAIWMAGHV 57

Query: 128 CVPLYDTLGPGAVNFILDHAEIDFVFV----QDKKVKELLSPD--CRSAQRLRVMVCFTS 181
            VPLY TL    + ++L+H++   +FV        +K  +              +     
Sbjct: 58  SVPLYPTLTAETIRYVLEHSDAKALFVGKLDDWDAMKAGVPEGLPTIILFPYSTLKDH-- 115

Query: 182 LTAEQKEMAVQTGIKPYSWDEFLHLGKVNEMEILPPQPF--NICTIMYTSGTSGDPKGVV 239
                           Y WD+ L      E     P P   ++ TI+YTSGT+G PKGV+
Sbjct: 116 ----------------YKWDDLL---AATEPLQGRPLPEPEDLATIVYTSGTTGQPKGVM 156

Query: 240 LTHETIATFVSGVDLFLDQFEDKMTVDDVYLSFLPLAHILDRVIEEY-FFRRGASVGYYH 298
           L+    A    G    +      +T +D  LS+LPLAHI +RVI E      GA V ++ 
Sbjct: 157 LSFGAFAFAAQGTIEII-----GLTPNDRLLSYLPLAHIAERVIVEGGSLYSGAEV-FFV 210

Query: 299 GDLNALRDDLMELKPTLLAGVPRVFEKIHEGI-----KKALEELRPLRRRIFDALYKYKL 353
             L+    DL   +PT+   VPR++ K  +GI      + L  L  L+  I  +L K   
Sbjct: 211 ESLDTFAADLQRARPTVFFSVPRLWTKFQQGILAKLPPEKLNLL--LKIPILSSLVK--- 265

Query: 354 AWMNMGYKQREASPLADLLAFRKVKARLG-GRLRLVISGGAPLSTEVEEFLR---VTCCA 409
                                +K+   LG  + RL  SG AP+   +  + R   +    
Sbjct: 266 ---------------------KKILKGLGLDQARLAGSGAAPMPPALIAWYRKLGLP--- 301

Query: 410 FLVQGYGLTETCGPTTVCFPDEMCMVGTAGPVSVYSELRLEEVPEMGYSPLDDPPCGEVC 469
            + +GYG+TE    +T+ +P +   +GT G      EL++ E              GE+ 
Sbjct: 302 -ICEGYGMTENFAYSTLNYPGDR-RIGTVGKPIPGVELKISED-------------GEIL 346

Query: 470 VRGKTLFSGYYKNPDLTRESI-IDGWFHTGDIGQILPNGVVKIIDRKKNLIKISQGEYVA 528
           +R   L SGYYK+P+ T E+   DGW HTGD G+I  +G +KI  R K L K S+G+YVA
Sbjct: 347 IRSPGLMSGYYKDPEKTAEAFTEDGWLHTGDKGEIDEDGFLKITGRVKELFKTSKGKYVA 406

Query: 529 LEYLENVYCVAPIIEDIWVYGDSLKSMLVAVVVPCEEDTKKWAYSNGHAGSFLELCSLVQ 588
              +EN+    P +E + V G  L    VA+VV  E        ++      +E  SL Q
Sbjct: 407 PAPIENLLSANPHVEQVCVVGSGLPQP-VALVVLSEA-------ADPLEREEVE-ESLQQ 457

Query: 589 LQNYILSELKNAAERNKLRGFEHIKGVILDPRPFDMERDLVTATLKKKRNKL 640
               + SEL++          E +  +++    + +E  L+T TLK KRN +
Sbjct: 458 TLAKVNSELES---------HERLSALVVVKEAWTVENGLLTPTLKIKRNVV 500

The members of this family are bacterial long-chain fatty acid CoA synthetase. Marinobacter hydrocarbonoclasticus isoprenoid Coenzyme A synthetase in this family is involved in the synthesis of isoprenoid wax ester storage compounds when grown on phytol as the sole carbon source. LC-FACS catalyzes the formation of fatty acyl-CoA in a two-step reaction: the formation of a fatty acyl-AMP molecule as an intermediate, and the formation of a fatty acyl-CoA. Free fatty acids must be "activated" to their CoA thioesters before participating in most catabolic and anabolic reactions. Length = 504

>gnl|CDD|223395 COG0318, CaiC, Acyl-CoA synthetases (AMP-forming)/AMP-acid ligases II [Lipid metabolism / Secondary metabolites biosynthesis, transport, and catabolism]

 Score =  255 bits (653), Expect = 4e-77
 Identities = 136/497 (27%), Positives = 204/497 (41%), Gaps = 76/497 (15%)

Query: 78  TYKEVYEEVLQIVSALRASGAEPGCRVGIYGANCPQWVEAMEACNALSLICVPLYDTLGP 137
           TY+E+     ++ +AL+A G +PG RV I   N P+++ A  A      + VPL   L P
Sbjct: 40  TYRELDRRANRLAAALQALGVKPGDRVAILLPNSPEFLIAFLAALRAGAVAVPLNPRLTP 99

Query: 138 GAVNFILDHAEIDFVFVQD--KKVKELLSPDCRSAQRLRVMVCFTSLTAEQKEMAVQTGI 195
             + +IL+ A    +        + E ++        + ++                   
Sbjct: 100 RELAYILNDAGAKVLITSAEFAALLEAVAEALPVVLVVLLVG-------------DADDR 146

Query: 196 KPYSWDEFLHLGKVNEMEILPPQPFNICTIMYTSGTSGDPKGVVLTHETIATFVSGVDLF 255
            P + +     G   + +  P  P ++  ++YTSGT+G PKGVVLTH  +   ++     
Sbjct: 147 LPITLEALAAEGPGPDADARPVDPDDLAFLLYTSGTTGLPKGVVLTHRNL---LANAAGI 203

Query: 256 LDQFEDKMTVDDVYLSFLPLAHILDRVIEEYFFRRGASVGYYHGDLNALRDDLMELKPTL 315
                  +T DDV LS+LPL HI            G  VG     L A           L
Sbjct: 204 AAALGGGLTPDDVVLSWLPLFHIF-----------GLIVG-----LLAP----------L 237

Query: 316 LAGVPRVFEKIHEGIKKALEELRPLRRRIFDALYKYKLAWM----NMGYKQREASPLADL 371
           L G   V           L         +   + KYK+  +        +      L D 
Sbjct: 238 LGGGTLVL----------LSPEPFDPEEVLWLIEKYKVTVLSGVPTFLRE------LLDN 281

Query: 372 LAFRKVKARLGGRLRLVISGGAPLSTEV-EEFLRVTCCAFLVQGYGLTETCGPTTVCFPD 430
                    L   LRLV+SGGAPL  E+ E F        +++GYGLTET    T+  PD
Sbjct: 282 PEKDDDD--LSSSLRLVLSGGAPLPPELLERFEERFGPIAILEGYGLTETSPVVTINPPD 339

Query: 431 EMC-MVGTAGPVSVYSELRLEEVPEMGYSPLDDPPCGEVCVRGKTLFSGYYKNPDLTRES 489
           ++    G+ G      E+R+  V   G   L     GE+ VRG  +  GY+  P+ T E+
Sbjct: 340 DLLAKPGSVGRPLPGVEVRI--VDPDGGEVLPGEV-GEIWVRGPNVMKGYWNRPEATAEA 396

Query: 490 II-DGWFHTGDIGQILPNGVVKIIDRKKNLIKISQGEYVALEYLENVYCVAPIIEDIWVY 548
              DGW  TGD+G +  +G + I+ R K+LI    GE +  E +E V    P + +  V 
Sbjct: 397 FDEDGWLRTGDLGYVDEDGYLYIVGRLKDLIISG-GENIYPEEIEAVLAEHPAVAEAAVV 455

Query: 549 G---DSLKSMLVAVVVP 562
           G   +     +VAVVV 
Sbjct: 456 GVPDERWGERVVAVVVL 472

Length = 534

>gnl|CDD|213299 cd05933, ACSBG_like, Bubblegum-like very long-chain fatty acid CoA synthetase (VL-FACS)

 Score =  251 bits (642), Expect = 7e-75
 Identities = 178/621 (28%), Positives = 272/621 (43%), Gaps = 82/621 (13%)

Query: 78  TYKEVYEEVLQIVSALRASGAEPGCRVGIYGANCPQWV-EAMEACNALSLICVPLYDTLG 136
           TYK+ YE   Q   A    G E    VGI G N P+W   A+ A  A   I V +Y T  
Sbjct: 10  TYKQYYEACRQAAKAFLKLGLERFHSVGILGFNSPEWFIAAVGAIFAGG-IAVGIYTTNS 68

Query: 137 PGAVNFILDHAEIDFVFVQDKKVKELLSPDCRSAQRLRVMVCFTSLTAEQKEMAVQTGIK 196
           P A  ++ + +E + + V + K  + +         L+ ++ +     ++KE        
Sbjct: 69  PEACQYVAETSEANILVVDNAKQLQKILAIQDQLPHLKAIIQY-REPLKEKE------PN 121

Query: 197 PYSWDEFLHLGK----VNEMEILPPQ-PFNICTIMYTSGTSGDPKGVVLTHETIATFVSG 251
            YSW EF+ LG+         I+  Q P   CT++YTSGT+G PKGV+L+H+ I      
Sbjct: 122 LYSWKEFMELGRSIPDEQLDAIIESQKPNQCCTLIYTSGTTGMPKGVMLSHDNITWTAKA 181

Query: 252 VDLFLDQFEDKMTVDDVYLSFLPLAHILDRVIEEYFFRRGASVG--YYHGDLNALRDDLM 309
               +D         +  +S+LPL+HI  ++++ +      SVG   Y    +AL+  L+
Sbjct: 182 AVKHMDLRTVG---QESVVSYLPLSHIAAQILDIWL---PISVGGCVYFAQPDALKGTLV 235

Query: 310 ----ELKPTLLAGVPRVFEKIHEGIKKALEELRPLRRRIF----DALYKYKLAWMNMGYK 361
               E++PT   GVPRV+EKI E +K    +   L+R+I         +  L  M     
Sbjct: 236 KTLREVRPTAFMGVPRVWEKIQERMKAVGAKSTGLKRKIASWAKGVGLETNLKLMGGESP 295

Query: 362 QREASPLADLLAFRKVKARLG-GRLRLVISGGAPLSTEVEEFLRVTCCAFL------VQG 414
                 LA  L F+KV+  LG  R +   +G AP+S E  EF       FL      ++ 
Sbjct: 296 PPMCFRLAKKLVFKKVRKALGLDRCQKFFTGAAPISRETLEF-------FLSLNIPIMEL 348

Query: 415 YGLTETCGPTTVCFPDEMCMVGTAGPVSVYSELRLEEVPEMGYSPLDDPPCGEVCVRGKT 474
           YG++ET GP TV  P     + + G      E ++      G         GE+C+ G+ 
Sbjct: 349 YGMSETSGPHTVSNPQNY-RLLSCGKALPGCETKIHNPDADGI--------GEICIWGRH 399

Query: 475 LFSGYYKNPDLTRESI-IDGWFHTGDIGQILPNGVVKIIDRKKNLIKISQGEYVALEYLE 533
           +F GY    + T E+I  DGW H+GD+G +  +G + I  R K LI  + GE V    +E
Sbjct: 400 VFMGYLNMEEKTEEAIDEDGWLHSGDLGFLDDDGFLYITGRIKELIITAGGENVPPVPIE 459

Query: 534 N-VYCVAPIIEDIWVYGDSLKSMLVAVVVPCEEDTKKWAYSNGHAGSFL-----ELCSLV 587
             V    PII +  + GD  K + + + + CE D +      G     L     E C L+
Sbjct: 460 EAVKKELPIISNAMLVGDKRKFLSMLLTLKCEVDPE-----TGEPLDNLTEEAIEFCRLL 514

Query: 588 QLQNYILSEL----------------KNAAERNKLRGFEHIKGVILDPRPFDMERDLVTA 631
                 +SE+                K   +       +  K VIL  + F +    +  
Sbjct: 515 GSHATTVSEILAGKDPLVYEAIEEGIKRVNKEAISNAQKVQKWVIL-EKDFSVPGGELGP 573

Query: 632 TLKKKRNKLLIYYQVEIDQLY 652
           T+K KR  +   Y+ EID+LY
Sbjct: 574 TMKLKRPVVAKKYKDEIDKLY 594

This family of very long-chain fatty acid CoA synthetase is named bubblegum because Drosophila melanogaster mutant bubblegum (BGM) has elevated levels of very-long-chain fatty acids (VLCFA) caused by a defective gene of this family. The human homolog (hsBG) has been characterized as a very long chain fatty acid CoA synthetase that functions specifically in the brain; hsBG may play a central role in brain VLCFA metabolism and myelinogenesis. VL-FACS is involved in the first reaction step of very long chain fatty acid degradation. It catalyzes the formation of fatty acyl-CoA in a two-step reaction: the formation of a fatty acyl-AMP molecule as an intermediate, and the formation of a fatty acyl-CoA. Free fatty acids must be "activated" to their CoA thioesters before participating in most catabolic and anabolic reactions. Length = 594

>gnl|CDD|213302 cd05936, FC-FACS_FadD_like, Prokaryotic long-chain fatty acid CoA synthetases similar to Escherichia coli FadD

 Score =  195 bits (498), Expect = 2e-55
 Identities = 125/489 (25%), Positives = 185/489 (37%), Gaps = 125/489 (25%)

Query: 46  DIFSMSVQKYPGNRMLGWRPFVDGKFGPYVWKTYKEVYEEVLQIVSALRASGAEPGCRVG 105
           D+   + +++P    L    F   K       TY E+ E   +  + L+  G + G RV 
Sbjct: 3   DLLERAARRFPDRPAL---TFFGRKL------TYAELDELSDRFAAYLQQLGVKKGDRVA 53

Query: 106 IYGANCPQWVEAMEACNALSLICVPLYDTLGPGAVNFILDHAEIDFVFVQDKKVKELLSP 165
           +   NCPQ+  A         + VP         VN +    E++     D   K     
Sbjct: 54  LMLPNCPQFPIAYFGILKAGAVVVP---------VNPLYTPRELEHQL-NDSGAK----- 98

Query: 166 DCRSAQRLRVMVCFTSLTAEQKEMAVQTGIKPYSWDEFLHLGKVNEMEILPPQPFNICTI 225
                    V++   S        A+ +G                    +   P ++  +
Sbjct: 99  ---------VLIVAISFED-----ALASGAPLP--------------LPVELSPDDLAVL 130

Query: 226 MYTSGTSGDPKGVVLTHETIATFVSGVDLFLDQFEDKMTVDDVYLSFLPLAHILDRVIEE 285
            YT GT+G PKG +LTH  +   V+ V       +D    +D +L+ LPL HI       
Sbjct: 131 QYTGGTTGVPKGAMLTHRNL---VANVQQIAAWVKDLREGEDRFLTALPLFHI------- 180

Query: 286 YFFRRGASVGYYHGDLNAL----RD-DLMEL----KPTLLAGVPRVFEKIHEGIKKALEE 336
           +       +G   G  N L    R  ++++     + T+  GVP                
Sbjct: 181 FGLTVNMLLGLRLGATNVLVPNFRPINVLKEIKRYRFTIFPGVP---------------- 224

Query: 337 LRPLRRRIFDALYKYKLAWMNMGYKQREASPLADLLAFRKVKARLGGRLRLVISGGAPLS 396
                      LY                     LL   + K      LRL ISGGAPL 
Sbjct: 225 ----------TLYNA-------------------LLNHPEFKKYDFSSLRLCISGGAPLP 255

Query: 397 TEV-EEFLRVTCCAFLVQGYGLTETCGPTTVCFPDEMCMVGTAG-PV-SVYSELRLEEVP 453
            EV E F   T    LV+GYGLTET   TTV   D     G+ G P+     ++  +E  
Sbjct: 256 VEVAERFEEKTGAP-LVEGYGLTETSPVTTVNPLDGERKPGSIGLPLPGTEVKIVDDEGN 314

Query: 454 EMGYSPLDDPPCGEVCVRGKTLFSGYYKNPDLTRESIIDGWFHTGDIGQILPNGVVKIID 513
           E+   P  +   GE+ VRG  +  GY+  P+ T E + DGW  TGDIG +  +G   I+D
Sbjct: 315 EL---PPGEV--GELVVRGPQVMKGYWNRPEETAEVLTDGWLRTGDIGYMDEDGYFYIVD 369

Query: 514 RKKNLIKIS 522
           RKK++I + 
Sbjct: 370 RKKDMIIVG 378

This subfamily of the AMP-forming adenylation family contains Escherichia coli FadD and similar prokaryotic fatty acid CoA synthetases. FadD was characterized as a long-chain fatty acid CoA synthetase. The gene fadD is regulated by the fatty acid regulatory protein FadR. Fatty acid CoA synthetase catalyzes the formation of fatty acyl-CoA in a two-step reaction: the formation of a fatty acyl-AMP molecule as an intermediate, followed by the formation of a fatty acyl-CoA. This is a required step before free fatty acids can participate in most catabolic and anabolic reactions. Length = 468

>gnl|CDD|235730 PRK06187, PRK06187, long-chain-fatty-acid--CoA ligase; Validated

 Score =  196 bits (501), Expect = 2e-55
 Identities = 138/524 (26%), Positives = 200/524 (38%), Gaps = 119/524 (22%)

Query: 78  TYKEVYEEVLQIVSALRASGAEPGCRVGIYGANCPQWVEAMEACNALSLICVPLYDTLGP 137
           TY E+ E V ++ +ALRA G + G RV ++  N  +++EA  A   +  +  P+   L P
Sbjct: 33  TYAELDERVNRLANALRALGVKKGDRVAVFDWNSHEYLEAYFAVPKIGAVLHPINIRLKP 92

Query: 138 GAVNFILDHAEIDFVFVQDKKVKELLSPDCRSAQRLRVMVCFTSLTAEQKEMAVQTGIKP 197
             + +IL+ AE   V V  + V  L      +A   ++    T +       A     + 
Sbjct: 93  EEIAYILNDAEDRVVLVDSEFVPLL------AAILPQLPTVRTVIVEGDGPAA-PLAPEV 145

Query: 198 YSWDEFLHLGKVNEMEILPPQPFN---ICTIMYTSGTSGDPKGVVLTHETIATFVSGVDL 254
             ++E L        +       +      ++YTSGT+G PKGVVL+H            
Sbjct: 146 GEYEELL----AAASDTFDFPDIDENDAAAMLYTSGTTGHPKGVVLSH---RNLFLHSLA 198

Query: 255 FLDQFEDKMTVDDVYLSFLPLAHILDRVIEEYFFRRGAS-VGY---YHG---------DL 301
                  K++ DDVYL  +P+ H+             A  + Y     G         D 
Sbjct: 199 VCAWL--KLSRDDVYLVIVPMFHV------------HAWGLPYLALMAGAKQVIPRRFDP 244

Query: 302 NALRDDLMELKPTLLAGVPRVFEKIHEGIKKALEELRPLRRRIFDALYKYKLAWMNMGYK 361
             L D +   + T    VP +                                   M  K
Sbjct: 245 ENLLDLIETERVTFFFAVPTI---------------------------------WQMLLK 271

Query: 362 QREASPLADLLAFRKVKARLGGRLRLVISGGAPLSTE-VEEFLRVTCCAFLVQGYGLTET 420
              A    D              LRLVI GGA L    + EF         VQGYG+TET
Sbjct: 272 APRAYF-VDF-----------SSLRLVIYGGAALPPALLREFKEKFGIDL-VQGYGMTET 318

Query: 421 CGPTTVCFPDE--------MCMVGTAGPVSVYSELRL-----EEVPEMGYSPLDDPPCGE 467
               +V  P++            G   P  V  E R+     +E+P  G         GE
Sbjct: 319 SPVVSVLPPEDQLPGQWTKRRSAGRPLP-GV--EARIVDDDGDELPPDGGEV------GE 369

Query: 468 VCVRGKTLFSGYYKNPDLTRESIIDGWFHTGDIGQILPNGVVKIIDRKKNLIKISQGEYV 527
           + VRG  L  GY+  P+ T E+I  GW HTGD+G I  +G + I DR K++I IS GE +
Sbjct: 370 IIVRGPWLMQGYWNRPEATAETIDGGWLHTGDVGYIDEDGYLYITDRIKDVI-ISGGENI 428

Query: 528 -ALEYLENVYCVAPIIEDIWVYG---DSLKSMLVAVVVPCEEDT 567
              E LE+     P + ++ V G   +      VAVVV     T
Sbjct: 429 YPRE-LEDALYGHPAVAEVAVIGVPDEKWGERPVAVVVLKPGAT 471

Length = 521

>gnl|CDD|240370 PTZ00342, PTZ00342, acyl-CoA synthetase; Provisional

 Score =  194 bits (495), Expect = 5e-53
 Identities = 124/368 (33%), Positives = 188/368 (51%), Gaps = 16/368 (4%)

Query: 187 KEMAVQTGIKPYSWDEFLHLGKVNEMEILPPQPFNICTIMYTSGTSGDPKGVVLTHETIA 246
           KE A + GI    +D+     K    +I    P  I +I+YTSGTSG PKGV+L+++ + 
Sbjct: 272 KEKAKKLGISIILFDDMTK-NKTTNYKIQNEDPDFITSIVYTSGTSGKPKGVMLSNKNLY 330

Query: 247 TFVSGVDLFLDQFEDKMTVDDVYLSFLPLAHILDRVIEEYFFRRGASVGYYHGDLNALRD 306
             V  V L       K      +LS+LP++HI +RVI    F  G ++  +  D+N    
Sbjct: 331 NTV--VPLCKHSIFKKYNPKT-HLSYLPISHIYERVIAYLSFMLGGTINIWSKDINYFSK 387

Query: 307 DLMELKPTLLAGVPRVFEKIHEGIKKALEELRPLRRRIFDALYKYKLAWMNMGYKQREAS 366
           D+   K  +LAGVP+VF +I+  I   +  L PL+R +   +   + +  N G+ +    
Sbjct: 388 DIYNSKGNILAGVPKVFNRIYTNIMTEINNLPPLKRFLVKKILSLRKSNNNGGFSKF--- 444

Query: 367 PLADLLAF-RKVKARLGGRLRLVISGGAPLSTEVEEFLRVTCCAFLVQGYGLTETCGPTT 425
            L  +     K+K ++   L ++++GG  LS ++ E L V       QGYGLTET GP  
Sbjct: 445 -LEGITHISSKIKDKVNPNLEVILNGGGKLSPKIAEELSVLLNVNYYQGYGLTETTGPIF 503

Query: 426 VCFPDEMCMVGTAGPVS--VYSELRLEEVPEMGYSPLDDPPCGEVCVRGKTLFSGYYKNP 483
           V   D+       GP+S     ++R  E     Y   D  P GE+ ++  ++FSGY+   
Sbjct: 504 VQHADDNNTESIGGPISPNTKYKVRTWET----YKATDTLPKGELLIKSDSIFSGYFLEK 559

Query: 484 DLTRESII-DGWFHTGDIGQILPNGVVKIIDRKKNLIKISQGEYVALEYLENVYCVAPII 542
           + T+ +   DG+F TGDI QI  NG +  +DR K L+K+SQGEY+  + L N+Y     I
Sbjct: 560 EQTKNAFTEDGYFKTGDIVQINKNGSLTFLDRSKGLVKLSQGEYIETDMLNNLYSQISFI 619

Query: 543 EDIWVYGD 550
               VYGD
Sbjct: 620 NFCVVYGD 627

Length = 746

>gnl|CDD|213279 cd05911, Firefly_Luc_like, Firefly luciferase of light emitting insects and 4-Coumarate-CoA Ligase (4CL)

 Score =  173 bits (441), Expect = 3e-47
 Identities = 128/516 (24%), Positives = 203/516 (39%), Gaps = 93/516 (18%)

Query: 78  TYKEVYEEVLQIVSALRASGAEPGCRVGIYGANCPQWVEAMEACNALSLICVPLYDTLGP 137
           T+ ++ ++ L++   LR  G + G  V +   N  ++      C A   I      +  P
Sbjct: 12  TFADLLKKALRLAKGLRKLGLKQGDVVALISPNSIEFPPVFLGCLAAGGIVSAANPSYTP 71

Query: 138 GAVNFILDHAEIDFVFVQDKKVKELLSPDCRSAQRLRVMVCFTSLTAEQKEMAVQTGIKP 197
             +   L  ++   +F  D    + +    +    +  ++   S        A    ++ 
Sbjct: 72  DELAHQLKISKPKLIFC-DPDELDKVKEAAKELGPVVRIIVLDS--------APDGVLRI 122

Query: 198 YSWDEFLHLGKVNEMEILPPQPFN----ICTIMYTSGTSGDPKGVVLTHETIATFVSGVD 253
               E        E E  P    +       ++Y+SGT+G PKGV+L+H+ I   ++ + 
Sbjct: 123 EDLLEPRLGA---EDEFRPTPLIDGKDDTAALLYSSGTTGLPKGVMLSHKNI---IANLS 176

Query: 254 LFLDQF-EDKMTVDDVYLSFLPLAHILDRVIEEYFFRRGASVGYYHGDLNALRDDLMELK 312
              D    +  + +DV L+FLP  H                +                  
Sbjct: 177 QVQDTLKGNPDSSNDVVLTFLPFYHA-------------YGLTTTLA------------- 210

Query: 313 PTLLAGVPRVFEKIHEGIKKALEELRPLRRRIFDALY-----KYKLAWMNMGYKQREASP 367
            +LL G   +                    +     +     KYK+  + +        P
Sbjct: 211 -SLLCGATVIIM-----------------PKFDSETFLKLIEKYKVTSLFL------VPP 246

Query: 368 LADLLAFRKV--KARLGGRLRLVISGGAPLSTEVEEFLRV-TCCAFLVQGYGLTETCGPT 424
           +A  LA   +  K  L   LR++ SG APLS E++E LR       + QGYG+TET   T
Sbjct: 247 IAVALAKSPLVDKYDLSS-LRVIFSGAAPLSKELQEELRKRFPNTTIKQGYGMTETGPAT 305

Query: 425 TVCFPDEMCMVGTAGPVSVYSELRLEEVPEMGYSPLDDPPCGEVCVRGKTLFSGYYKNPD 484
           T+  P +    G+ G +    E ++  V E G   L     GE+CV+G  +  GY  NP+
Sbjct: 306 TLTPPGD-EKPGSVGRLVPNVEAKI--VDEDGGKSLGPNERGELCVKGPQIMKGYLNNPE 362

Query: 485 LTRESII-DGWFHTGDIGQILPNGVVKIIDRKKNLIKISQGEYVALEYLENVYCVAPIIE 543
            T+E+I  DGW HTGDIG    +G   I+DRKK LIK  +G  V    LE V    P + 
Sbjct: 363 ATKETIDEDGWLHTGDIGYFDEDGNFYIVDRKKELIKY-KGYQVPPAELEAVLLEHPKVA 421

Query: 544 DIWVYG--DSLKSML-VAVVVP------CEEDTKKW 570
           D  V G  D +   L  A VV        E++ K +
Sbjct: 422 DAAVIGIPDEVAGELPRAYVVLKPGSKLTEQEVKDY 457

This family contains two functionally unique groups of proteins; one group is insect firefly luciferases and the other is plant 4-coumarate:coenzyme A ligases. However, they share significant sequence similarity in spite of their functional diversity. Luciferase catalyzes the production of light in the presence of MgATP, molecular oxygen, and luciferin. In the first step, luciferin is activated by acylation of its carboxylate group with ATP, resulting in an enzyme-bound luciferyl adenylate. In the second step, luciferyl adenylate reacts with molecular oxygen, producing an enzyme-bound excited state product (Luc=O*) and releasing AMP. This excited-state product then decays to the ground state (Luc=O), emitting a quantum of visible light. 4-coumarate:coenzyme A ligase is a key enzyme in the phenylpropanoid metabolic pathway for monolignol and flavonoid biosynthesis. It catalyzes the synthesis of hydroxycinnamate-CoA thioesters in a two-step reaction, involving the formation of hydroxycinnamate-AMP anhydride and then the nucleophilic substitution of AMP by CoA. The phenylpropanoid pathway is one of the most important secondary metabolism pathways in plants and hydroxycinnamate-CoA thioesters are the precursors of lignin and other important phenylpropanoids. Length = 487

>gnl|CDD|213271 cd05903, CHC_CoA_lg, Cyclohexanecarboxylate-CoA ligase (also called cyclohex-1-ene-1-carboxylate:CoA ligase)

 Score =  164 bits (418), Expect = 1e-44
 Identities = 131/498 (26%), Positives = 197/498 (39%), Gaps = 126/498 (25%)

Query: 78  TYKEVYEEVLQIVSALRASGAEPGCRVGIYGANCPQWVEAMEACNALSLICVPLYDTLGP 137
           TY E+ +   ++ +AL   G  PG  V     N  ++V    AC  +  +  P+      
Sbjct: 3   TYGELDDAADRLAAALAELGVRPGDVVAFQLPNWWEFVVVYLACARIGAVINPIVPIYRE 62

Query: 138 GAVNFILDHAEIDFVFVQDKKVKELLSPDCRSAQRLRVMVCFTSLTAEQKEMAVQTGIKP 197
             + FIL  A                        R RV+                    P
Sbjct: 63  RELGFILRQA------------------------RARVLFV------------------P 80

Query: 198 YSWDEFLHLGKVNEMEILPPQPFNICTIMYTSGTSGDPKGVVLTHETI-ATFVSGVDLFL 256
             +  F +             P ++  ++YTSGT+G+PKGV+ TH T+ A   S V+   
Sbjct: 81  DEFRGFDYAA----------MPDDVALLLYTSGTTGEPKGVMHTHNTLLAEVRSYVERL- 129

Query: 257 DQFEDKMTVDDVYLSFLPLAHILDRVIEEYFFRRGASVGYYHGDLNALRDDLMELKPTLL 316
                 +T DDV L   PLAHI                G+ +G         +EL   LL
Sbjct: 130 -----GLTPDDVVLMPSPLAHI---------------TGFLYG---------LEL--PLL 158

Query: 317 AGVPRVFEKIHEGIKKALEELRPLRRRIFDALYKYKLAWMNMGYKQREASP-LADLLAFR 375
            G   V            +   P   R  + + ++ + +  MG     A+P LADLLA  
Sbjct: 159 LGATVVL----------QDRWDP--ARALELIREHGVTFT-MG-----ATPFLADLLAAA 200

Query: 376 KVKARLGGRLRLVISGGAPLSTE-VEEFLRVTCCAFLVQGYGLTETCGPTTVCFPD--EM 432
                    LR+ + GGAP+  E             +V+ YG+TE     TV  PD  + 
Sbjct: 201 DAAGPDLPSLRVFLCGGAPVPRELARRAAEALGAK-VVRAYGMTE-VPLVTVGTPDDPDD 258

Query: 433 CMVGTAGPVSVYSELRL-----EEVPEMGYSPLDDPPCGEVCVRGKTLFSGYYKNPDLTR 487
               T G      E+R+      +VP     P ++   GE+ VRG  LF GY   PD T 
Sbjct: 259 KRAATDGRPVPGVEVRIVDDDGNDVP-----PGEE---GELQVRGPQLFLGYLDPPDNTE 310

Query: 488 ESIIDGWFHTGDIGQILPNGVVKIIDRKKNLIKISQGEYVALEYLENVYCVAPIIEDIWV 547
               DGWF TGD+G++  +G ++I  RKK++I I  GE ++   +E++    P + ++ V
Sbjct: 311 AFTDDGWFRTGDLGRLDADGYLRITGRKKDII-IRGGENISAREIEDLLLRHPAVAEVAV 369

Query: 548 YG---DSLKSMLVAVVVP 562
                + L   + AVVVP
Sbjct: 370 VAMPDERLGERVCAVVVP 387

Cyclohexanecarboxylate-CoA ligase activates the aliphatic ring compound, cyclohexanecarboxylate, for degradation. It catalyzes the synthesis of cyclohexanecarboxylate-CoA thioesters in a two-step reaction involving the formation of cyclohexanecarboxylate-AMP anhydride, followed by the nucleophilic substitution of AMP by CoA. Length = 437

>gnl|CDD|213270 cd04433, AFD_class_I, Adenylate forming domain, Class I

 Score =  160 bits (407), Expect = 5e-44
 Identities = 105/355 (29%), Positives = 150/355 (42%), Gaps = 63/355 (17%)

Query: 221 NICTIMYTSGTSGDPKGVVLTHETIATFVSGVDLFLDQFEDKMTVDDVYLSFLPLAHILD 280
           +   I+YTSGT+G PKGVVL+H      ++             T  DV LS LPL H++ 
Sbjct: 1   DPAFILYTSGTTGKPKGVVLSH---RNLLANAQALAQAIGL--TEGDVLLSVLPLFHVVG 55

Query: 281 RVIEEYF-FRRGASVGYYHGDLNALR--DDLMELKPTLLAGVPRVFEKIHEGIKKALEEL 337
                      G +V  Y G    L   + + + + T+L GVP +++ +           
Sbjct: 56  GGSGLLGALLAGGTVVLYEGFPFPLSFLELIEQYRVTVLFGVPTLYDAL----------A 105

Query: 338 RPLRRRIFDALYKYKLAWMNMGYKQREASPLADLLAFRKVKARLGGRLRLVISGGAPLST 397
           +    R       Y L+                              LRL+ISGG PLS 
Sbjct: 106 KAAEDR------GYDLS-----------------------------SLRLLISGGEPLSP 130

Query: 398 EV-EEFLRVTCCAFLVQGYGLTETCGPTTVCFPDEMCMVGTAGPVSVYSELRLEEVPEMG 456
           E+ E F        +++GYGLTET   T+     E+   GT G      E+R+  V E G
Sbjct: 131 ELLERFEERPGAP-ILEGYGLTETSVVTSTNPDSELKKPGTVGRPVPGVEVRV--VDEEG 187

Query: 457 YSPLDDPPCGEVCVRGKTLFSGYYKNPDLTRESII-DGWFHTGDIGQILPNGVVKIIDRK 515
             PL     GE+ VRG  +  GY+ NP  T  +   DGW+ TGD+G +   G + I  R 
Sbjct: 188 -KPLPPGEVGELVVRGPWVMKGYWNNPPETTAAATEDGWYRTGDLGYLDEEGYLYITGRS 246

Query: 516 KNLIKISQGEYVALEYLENVYCVAPIIEDIWVYG--DSLKS-MLVAVVVPCEEDT 567
           K+LIK+  GE V    +E+V    P + +  V G  D  +   +VA VV      
Sbjct: 247 KDLIKVG-GENVYPAEVESVLLQHPAVAEAAVVGVPDEDRGERIVAFVVLRPGAD 300

This family includes acyl- and aryl-CoA ligases, as well as the adenylation domain of nonribosomal peptide synthetases and firefly luciferases. The adenylate-forming enzymes catalyze an ATP-dependent two-step reaction to first activate a carboxylate substrate as an adenylate and then transfer the carboxylate to the pantetheine group of either coenzyme A or an acyl-carrier protein. The active site of the domain is located at the interface of a large N-terminal subdomain and a smaller C-terminal subdomain. Length = 338

>gnl|CDD|236072 PRK07656, PRK07656, long-chain-fatty-acid--CoA ligase; Validated

 Score =  163 bits (415), Expect = 1e-43
 Identities = 119/462 (25%), Positives = 179/462 (38%), Gaps = 95/462 (20%)

Query: 78  TYKEVYEEVLQIVSALRASGAEPGCRVGIYGANCPQWVEAMEACNALSLICVPLYDTLGP 137
           TY E+   V +  +AL A G   G RV I+  N P WV A         + VPL      
Sbjct: 32  TYAELNARVRRAAAALAALGIGKGDRVAIWAPNSPHWVIAALGALKAGAVVVPLNTRYTA 91

Query: 138 GAVNFILDHAEIDFVFVQDKKVKELLSPDCRSAQRLRVMVCFTSLTAEQKEMAVQTGIKP 197
               +IL   +   +FV        L  D  +  RL  +        E+         K 
Sbjct: 92  DEAAYILARGDAKALFVLG----LFLGVDYSATTRLPALEHVVICETEE---DDPHTEKM 144

Query: 198 YSWDEFLHLGKVNEMEILPPQPFNICTIMYTSGTSGDPKGVVLTHETIATFVSGVDLFLD 257
            ++ +FL  G   E       P ++  I++TSGT+G PKG +LTH  + +  +    +L 
Sbjct: 145 KTFTDFLAAGDPAERA-PEVDPDDVADILFTSGTTGRPKGAMLTHRQLLSNAADWAEYLG 203

Query: 258 QFEDKMTVDDVYLSFLPLAHILDRVIEEYF---------FRRGASVGYYHGDLNALRDDL 308
                +T  D YL+  P  H+        F           RGA++       +   D++
Sbjct: 204 -----LTEGDRYLAANPFFHV--------FGYKAGVNAPLMRGATI-LPLPVFDP--DEV 247

Query: 309 MEL----KPTLLAGVPRVFEKIHEGIKKALEELRPLRRRIFDALYKYKLAWMNMGYKQRE 364
             L    + T+L G P                           +Y   L      +  R 
Sbjct: 248 FRLIETERITVLPGPP--------------------------TMYNSLLQ-----HPDRS 276

Query: 365 ASPLADLLAFRKVKARLGGRLRLVISGGA----PLSTEVEEFLRVTCCAFLVQGYGLTET 420
           A  L+ L              RL ++G A     L    E  L V     ++ GYGL+E 
Sbjct: 277 AEDLSSL--------------RLAVTGAASMPVALLERFESELGV---DIVLTGYGLSEA 319

Query: 421 CGPTTVCFPDE--MCMVGTAGPVSVYSELRLEEVPEMGYSPLDDPPCGEVCVRGKTLFSG 478
            G TT    D+    + GT G      E ++  V E+G   +     GE+ VRG  +  G
Sbjct: 320 SGVTTFNRLDDDRKTVAGTIGTAIAGVENKI--VNELG-EEVPVGEVGELLVRGPNVMKG 376

Query: 479 YYKNPDLTRESI-IDGWFHTGDIGQILPNGVVKIIDRKKNLI 519
           YY +P+ T  +I  DGW HTGD+G++   G + I+DRKK++ 
Sbjct: 377 YYDDPEATAAAIDADGWLHTGDLGRLDEEGYLYIVDRKKDMF 418

Length = 513

>gnl|CDD|213327 cd12119, ttLC_FACS_AlkK_like, Fatty acyl-CoA synthetases similar to LC-FACS from Thermus thermophiles

 Score =  156 bits (397), Expect = 5e-41
 Identities = 121/497 (24%), Positives = 190/497 (38%), Gaps = 114/497 (22%)

Query: 72  GPYVWKTYKEVYEEVLQIVSALRASGAEPGCRVGIYGANCPQWVEAMEACNALSLICVPL 131
           G     TY + Y  V ++ +AL + G +PG RV     N  + +E   A   +  +   L
Sbjct: 21  GSIHRYTYADFYRRVRRLANALESLGVKPGDRVATLAWNTHRHLELYFAVPGMGAVLHTL 80

Query: 132 YDTLGPGAVNFILDHAEIDFVFVQDKKVKELLSPDCRSAQRLRVMVCFTSLTAEQKEMAV 191
              L P  + +I++HAE   +FV D     LL      A RL  +           +M  
Sbjct: 81  NPRLSPEQIAYIINHAEDKVIFV-DDDFLPLLE---AIAPRLPTVKAVVVYDDA--DMPE 134

Query: 192 QTGIKPYSWDEFLHLGKVNEMEILPPQPFN-ICTIMYTSGTSGDPKGVVLTHETIA--TF 248
            +    Y+++E L   + +     P    N    + YTSGT+G+PKGVV +H ++   T 
Sbjct: 135 TSLPNVYAYEELL--EEESPEYEWPELDENTAAGLCYTSGTTGNPKGVVYSHRSLVLHTL 192

Query: 249 VSGVDLFLDQFEDKMTVDDVYLSFLPLAHILDRVIEEYFFRRGASVGYY----------- 297
            S +   L      ++  D  L  +P+ H+               + Y            
Sbjct: 193 ASALPDSLG-----LSESDTVLPVVPMFHVN-----------AWGLPYAATMVGAKLVLP 236

Query: 298 --HGDLNALRDDLMELKPTLLAGVPRVFEKIHEGIKKALEELRPLRRRIFDALYKYKLAW 355
             + D  +L D + E K T+ AGVP +                                W
Sbjct: 237 GRYLDPASLLDLIEEEKVTVSAGVPTI--------------------------------W 264

Query: 356 MNMGYKQREASPLADLLAFRKVKARLGGRLRLVISGGAPLSTEVEEFLR--VTCCAFLVQ 413
           + +            L         L    R+V+ G A   + +E+     V     ++ 
Sbjct: 265 LGL------------LNYLEANGKDLSSLRRVVVGGSALPRSLIEKLEERGVE----VIH 308

Query: 414 GYGLTETCGPTTVCFPDEMCMVG-----------TAGPVSVYSELRL-----EEVPEMGY 457
            +G+TET    TV       +V              G      ELR+      E+P  G 
Sbjct: 309 AWGMTETSPLGTVSRLKPH-LVDLPEEEKLELRAKQGRPVPGVELRIVDDEGNELPWDGK 367

Query: 458 SPLDDPPCGEVCVRGKTLFSGYYKNPDLTRESIIDGWFHTGDIGQILPNGVVKIIDRKKN 517
           +       GE+ VRG  +   YYK+P+ T E   DGWF TGD+  I  +G ++I DR K+
Sbjct: 368 TV------GELVVRGPWVTGSYYKDPEKTEELTRDGWFRTGDVAVIDEDGYIQITDRAKD 421

Query: 518 LIKISQGEYVALEYLEN 534
           +IK S GE+++   LEN
Sbjct: 422 VIK-SGGEWISSVELEN 437

This family includes fatty acyl-CoA synthetases that can activate medium-chain to long-chain fatty acids. They catalyze the ATP-dependent acylation of fatty acids in a two-step reaction. The carboxylate substrate first reacts with ATP to form an acyl-adenylate intermediate, which then reacts with CoA to produce an acyl-CoA ester. The fatty acyl-CoA synthetases are responsible for fatty acid degradation as well as physiological regulation of cellular functions via the production of fatty acyl-CoA esters. The fatty acyl-CoA synthetase from Thermus thermophiles in this family was shown catalyzing the long-chain fatty acid, myristoyl acid, while another member in this family, the AlkK protein identified from Pseudomonas oleovorans, targets medium chain fatty acids. This family also includes uncharacterized FACS proteins. Length = 517

>gnl|CDD|213280 cd05912, OSB_CoA_lg, O-succinylbenzoate-CoA ligase (also known as O-succinylbenzoate-CoA synthase, OSB-CoA synthetase, or MenE)

 Score =  150 bits (382), Expect = 7e-40
 Identities = 99/367 (26%), Positives = 139/367 (37%), Gaps = 84/367 (22%)

Query: 212 MEILPPQPFNICTIMYTSGTSGDPKGVVLTHETIATFVSGVDLFLDQFEDKMTVDDVYLS 271
           +  L P      TI++TSG++G PK VV T         G    L      +T DD +L 
Sbjct: 69  LADLQPDLDRPATIIFTSGSTGKPKAVVHTWGNHLASARGSAENL-----GLTPDDNWLL 123

Query: 272 FLPLAH-----ILDRVIEEYFFRRGASVGYYHGDLNALRDDLMELKPTLLAGVPRVFEKI 326
            LPL H     I+ R         GA V     D  A+ + L     T ++ VP      
Sbjct: 124 SLPLFHVSGLAIVMRS----LLAGGALVLPDKFDAEAIAEALENHGVTHISLVP------ 173

Query: 327 HEGIKKALEELRPLRRRIFDALYKYKLAWMNMGYKQREASPLADLLAFRKVKARLGGRLR 386
                          +R+ +                  A  L+               LR
Sbjct: 174 ------------TQLQRLLE---------------SLGARWLS--------------SLR 192

Query: 387 LVISGGAPLSTEVEEFLRVTCCAF---LVQGYGLTETCGP-TTVCFPDEMCMVGTAGPVS 442
            V+ GGAP+       L          L   YG+TET     T+   D +  +G+ G   
Sbjct: 193 AVLLGGAPIPPS----LLEQARQRGIPLYPTYGMTETASQVATLKPDDFLAKLGSVGKPL 248

Query: 443 VYSELRLEEVPEMGYSPLDDPPCGEVCVRGKTLFSGYYKNPDLTRESIIDGWFHTGDIGQ 502
              ELR+    +           GE+ VRG +LF GY     LT     DGWFHTGD+G 
Sbjct: 249 PGRELRIVNPQD-----------GEILVRGPSLFLGYLPQGGLTPPLDEDGWFHTGDLGY 297

Query: 503 ILPNGVVKIIDRKKNLIKISQGEYVALEYLENVYCVAPIIEDIWVYG---DSLKSMLVAV 559
           +   G + ++ R+ +LI IS GE +  E +E V    P +E+  V G   D      VA 
Sbjct: 298 LDAEGYLYVLGRRDDLI-ISGGENIYPEEIEAVLLQHPAVEEAAVVGVPDDEWGQRPVAF 356

Query: 560 VVPCEED 566
           VVP ++ 
Sbjct: 357 VVPNDDP 363

O-succinylbenzoic acid-CoA synthase catalyzes the coenzyme A (CoA)- and ATP-dependent conversion of o-succinylbenzoic acid to o-succinylbenzoyl-CoA. The reaction is the fourth step of the biosynthesis pathway of menaquinone (vitamin K2). In certain bacteria, menaquinone is used during fumarate reduction in anaerobic respiration. In cyanobacteria, the product of the menaquinone pathway is phylloquinone (2-methyl-3-phytyl-1,4-naphthoquinone), a molecule used exclusively as an electron transfer cofactor in Photosystem 1. In green sulfur bacteria and heliobacteria, menaquinones are used as loosely bound secondary electron acceptors in the photosynthetic reaction center. Length = 407

>gnl|CDD|213272 cd05904, 4CL, 4-Coumarate-CoA Ligase (4CL)

 Score =  152 bits (386), Expect = 1e-39
 Identities = 102/364 (28%), Positives = 155/364 (42%), Gaps = 81/364 (22%)

Query: 216 PPQPF----NICTIMYTSGTSGDPKGVVLTHETIATFVSGVDLFLDQFEDKMTVDDVYLS 271
           PP       ++  + Y+SGT+G  KGV+LTH      ++ V   +         +DV L 
Sbjct: 150 PPVVVIKQDDVAALPYSSGTTGRSKGVMLTH---RNLIANVAQLVAGEGPNFDREDVTLC 206

Query: 272 FLPLAHILDRVIEEYFFRRGASVGYYHGDLNALRDDLMELKPTLLAGVPRVFEKIHEGIK 331
            LP+ HI                   +G L  +   L+ L  T++  +PR F+       
Sbjct: 207 VLPMFHI-------------------YG-LTVILLALLRLGATVVV-MPR-FD------- 237

Query: 332 KALEELRPLRRRIFDALYKYKLAWMNMGYKQREASPLADLLAFRKVKARLGGR-----LR 386
             LE+          A+ KYK+  +          P+   +    VK  +  +     L+
Sbjct: 238 --LEKF-------LAAIEKYKVTHL----------PVVPPIVLALVKHPIVDKYDLSSLK 278

Query: 387 LVISGGAPLSTEVEE-FLRVTCCAFLVQGYGLTETCGPTTVCFPDE-MCMVGTAGPVSVY 444
            + SG APL  E+ E F        L QGYG+TE+   TT+C   E     G+ G +   
Sbjct: 279 QIGSGAAPLGKELAEAFRARFPGVELGQGYGMTESSPVTTMCPVPEKDPKPGSVGRLVPN 338

Query: 445 SELRLEEVPEMGYSPLDDPPCGEVCVRGKTLFSGYYKNPDLTRESII-DGWFHTGDIGQI 503
            E ++ + PE G   L     GE+ VRG  +  GY  NP+ T E+I  DGW HTGD+G  
Sbjct: 339 VEAKIVD-PETG-ESLPPNQPGELWVRGPQVMKGYLNNPEATAETIDKDGWLHTGDLGYF 396

Query: 504 LPNGVVKIIDRKKNLIKISQGEYVALEYLENVYCVAPI-IEDIWVYGDSLKSMLVAVVVP 562
             +G + I+DR K LIK     Y         + VAP  +E + +   S   +  A V+P
Sbjct: 397 DEDGYLFIVDRLKELIK-----Y-------KGFQVAPAELEALLL---SHPEIADAAVIP 441

Query: 563 CEED 566
             ++
Sbjct: 442 YPDE 445

4-Coumarate:coenzyme A ligase is a key enzyme in the phenylpropanoid metabolic pathway for monolignol and flavonoid biosynthesis. It catalyzes the synthesis of hydroxycinnamate-CoA thioesters in a two-step reaction, involving the formation of hydroxycinnamate-AMP anhydride and the nucleophilic substitution of AMP by CoA. The phenylpropanoid pathway is one of the most important secondary metabolism pathways in plants and hydroxycinnamate-CoA thioesters are the precursors of lignin and other important phenylpropanoids. Length = 504

>gnl|CDD|213284 cd05917, FACL_like_2, Uncharacterized subfamily of fatty acid CoA ligase (FACL)

 Score =  143 bits (362), Expect = 1e-37
 Identities = 93/375 (24%), Positives = 148/375 (39%), Gaps = 89/375 (23%)

Query: 222 ICTIMYTSGTSGDPKGVVLTHETIATFVSGVDLFLDQFEDKMTVDDVYLSFLPLAHILDR 281
              I YTSGT+G PKG +LTH  +   ++       +    +T  D  L  +PL H+   
Sbjct: 4   PALIQYTSGTTGRPKGAMLTHRNV---LNNGYSIARRL--GLTEGDRTLVPVPLFHV--- 55

Query: 282 VIEEYF---------FRRGASVGYYHGDLNALR--DDLMELKPTLLAGVPRVFEKIHEGI 330
                F            GA++       +       +   + T L GVP +F       
Sbjct: 56  -----FGLVLGVLASLTAGATL-VLMEKFDPGAALRLIERERITALHGVPTMF------- 102

Query: 331 KKALEELRPLRRRIFDALYKYKLAWMNMGYKQREASPL-ADLLAFRKVKARLGGRLRLVI 389
              +  L       FD      L     G      +P+  +L+  R+++           
Sbjct: 103 ---IALLEHPDFDKFDL---SSLRTGISG-----GAPVPPELV--RRIREEFP------- 142

Query: 390 SGGAPLSTEVEEFLRVTCCAFLVQGYGLTETCGPTTVCFPDEMCM--VGTAGPVSVYSEL 447
                              A +  GYG+TET G  T    D+      GT G      E+
Sbjct: 143 ------------------MAEITTGYGMTETSGVGTQTSGDDPYEDRPGTVGRPLPGVEV 184

Query: 448 RLEEVPEMGYSPLDDPPCGEVCVRGKTLFSGYYKNPDLTRESII-DGWFHTGDIGQILPN 506
           ++ + P+ G  P  +   GE+CVRG ++  GYY +P+ T E+I  DGW HTGD+G +  +
Sbjct: 185 KIVD-PDGGEVPPGEV--GEICVRGYSVMKGYYNDPEATAEAIDADGWLHTGDLGYMDED 241

Query: 507 GVVKIIDRKKNLIKISQGEYVA-LEYLENVYCVAPIIEDIWVYG---DSLKSMLVAVVVP 562
           G ++I+ R K++I I  GE +   E +E      P + +  V G   + L  ++ A VV 
Sbjct: 242 GYLRIVGRIKDMI-IRGGENIYPAE-IEEALLTHPAVAEAAVVGVPDERLGEVVAAFVVL 299

Query: 563 ------CEEDTKKWA 571
                  EE+   + 
Sbjct: 300 KPGATLTEEELIAFC 314

Fatty acyl-CoA ligases catalyze the ATP-dependent activation of fatty acids in a two-step reaction. The carboxylate substrate first reacts with ATP to form an acyl-adenylate intermediate, which then reacts with CoA to produce an acyl-CoA ester. This is a required step before free fatty acids can participate in most catabolic and anabolic reactions. Length = 347

>gnl|CDD|213307 cd05941, MCS, Malonyl-CoA synthetase (MCS)

 Score =  143 bits (363), Expect = 4e-37
 Identities = 133/503 (26%), Positives = 185/503 (36%), Gaps = 147/503 (29%)

Query: 78  TYKEVYEEVLQIVSALRASGAEPGCRVGIYGANCPQWVEAMEACNALSLICVPLYDTLGP 137
           TY E+     ++  AL A G  PG RV +      ++V    A      + VPL  +   
Sbjct: 13  TYGELDARSGRLAKALLALGLLPGDRVAVLAPKSAEYVVLYLAIWRAGGVAVPLNPSYPA 72

Query: 138 GAVNFILDHAEIDFVFVQDKKVKELLSPDCRSAQRLRVMVCFTSLTAEQKEMAVQTGIKP 197
                    AE+ +  + D +   L+ P          ++ +TS                
Sbjct: 73  ---------AELAY-ILSDSQPSLLVDP---------ALIIYTS---------------- 97

Query: 198 YSWDEFLHLGKVNEMEILPPQPFNICTIMYTSGTSGDPKGVVLTHETIATFVSGVDLFLD 257
                                           GT+G PKGVVLTH  +A   +     ++
Sbjct: 98  --------------------------------GTTGRPKGVVLTHGNLA---ANARALVE 122

Query: 258 QFEDKMTVDDVYLSFLPLAHILDRVIEEYFFRRGASVGYYHGDLNALRDDLMELKPTLLA 317
            +  + T  DV L  LPL H+                   HG  NAL          L A
Sbjct: 123 AW--RWTASDVLLHALPLHHV-------------------HGLFNALH-------CPLWA 154

Query: 318 GVPRVFEKIHEGIKKALEELRPLRRRIFDALYKYKLAWMN-----MG----YKQREASPL 368
           G    F                L R  FD   +  L  +      MG    Y +     L
Sbjct: 155 GASVEF----------------LPR--FDPQERDALRLLPRITVFMGVPTIYTR-----L 191

Query: 369 ADLLAFRKVKARLGGRLRLVISGGAPLSTEV-EEFLRVTCCAFLVQGYGLTETCGPTTVC 427
            +   F    A     LRL +SG A L   V E +   T    L++ YG+TET G     
Sbjct: 192 LEHYEFDDAAAAAARNLRLFVSGSAALPVPVLERWEERT-GHTLLERYGMTET-GMALSN 249

Query: 428 FPDEMCMVGTAG-PV-SVYSELRLEEVPEMGYSPLDDPPCGEVCVRGKTLFSGYYKNPDL 485
             D     GT G P+  V  E+R+  V E G  PL     GE+ VRG  +FS Y+  P+ 
Sbjct: 250 PLDGERRPGTVGLPLPGV--EVRI--VDEDGGEPLAAGEVGEIQVRGPNVFSEYWNKPEA 305

Query: 486 TRESII-DGWFHTGDIGQILPNGVVKIIDRKKNLIKISQGEY--VALEYLENVYCVAPII 542
           T E+   DGWF TGD+G +  +G  +I+ RK + I I  G Y   ALE +E      P +
Sbjct: 306 TAEAFTEDGWFKTGDVGVVDEDGYYRILGRKSDDI-IKSGGYKVSALE-IEEALLEHPGV 363

Query: 543 EDIWVYG---DSLKSMLVAVVVP 562
            ++ V G         +VAVVVP
Sbjct: 364 AEVAVIGVPDPDWGEAVVAVVVP 386

MCS catalyzes the formation of malonyl-CoA in a two-step reaction consisting of the adenylation of malonate with ATP, followed by malonyl transfer from malonyl-AMP to CoA. Malonic acid and its derivatives are the building blocks of polyketides and malonyl-CoA serves as the substrate of polyketide synthases. Malonyl-CoA synthetase has broad substrate tolerance and can activate a variety of malonyl acid derivatives. MCS may play an important role in biosynthesis of polyketides, the important secondary metabolites with therapeutic and agrochemical utility. Length = 430

>gnl|CDD|213295 cd05929, BACL_like, Bacterial Bile acid CoA ligases and similar proteins

 Score =  136 bits (344), Expect = 3e-35
 Identities = 93/331 (28%), Positives = 137/331 (41%), Gaps = 92/331 (27%)

Query: 222 ICTIMYTSGTSGDPKGVVLTHETIATFVSGVDLFLDQFEDKMTVDDVYLSFLPLAHILDR 281
              I+YTSGT+G PKGV+LTH  +          +D     ++  DVYL   PL      
Sbjct: 3   PALILYTSGTTGRPKGVMLTHRNLLANAVNALAGVD-----LSPGDVYLLAAPL------ 51

Query: 282 VIEEYFFRRGASVGYYHGDLNALRDDLMELKPTLLAGVPRVFEKIHEGIKKALEELRPLR 341
                          YH            L P L AG   V           + +  P  
Sbjct: 52  ---------------YHAAGGLF------LLPALAAGGTVVL----------MPKFDP-- 78

Query: 342 RRIFDALYKYKL-------AWMNMGYKQREASPLADLLAFRKVKARLGGRLRLVISGGAP 394
             + D + ++++                     L  L  F +        LRL+I G AP
Sbjct: 79  EAVLDLIERHRVTHTFLVPTMFQR---------LLRLPDFARYD---LSSLRLIIYGAAP 126

Query: 395 LSTEVEEFLRVTCCAFLVQGYGLTETCGPTTVCFPDEMCM--VGTAGPVSVYSELRL--- 449
           +  E++  +        VQGYG+TET GPTT     E  +  +G+ G      E+R+   
Sbjct: 127 MPAELKRAMIEWFGPVFVQGYGMTET-GPTTTLLSPEDWLRKLGSVGRPVPGVEVRIVDE 185

Query: 450 --EEVP--EMGYSPLDDPPCGEVCVRGKTLFSGYYKNPDLTRESIIDGWFHTGDIGQILP 505
              E+P  E+G          E+ VRG  + +GY+  P+ T E++ DGW HTGD+G +  
Sbjct: 186 DGRELPPGEVG----------EIVVRGPAVMAGYWNRPEATAEALRDGWLHTGDLGYLDE 235

Query: 506 NGVVKIIDRKKNLIKISQGEYVALEYLENVY 536
           +G + I+DRKK++I IS G        EN+Y
Sbjct: 236 DGYLYIVDRKKDMI-ISGG--------ENIY 257

Bile acid-Coenzyme A ligase catalyzes the formation of bile acid-CoA conjugates in a two-step reaction: the formation of a bile acid-AMP molecule as an intermediate, followed by the formation of a bile acid-CoA. This ligase requires a bile acid with a free carboxyl group, ATP, Mg2+, and CoA for synthesis of the final bile acid-CoA conjugate. The bile acid-CoA ligation is believed to be the initial step in the bile acid 7alpha-dehydroxylation pathway in the intestinal bacterium Eubacterium sp. Length = 342

>gnl|CDD|213301 cd05935, LC_FACS_like, Putative long-chain fatty acid CoA ligase

 Score =  130 bits (328), Expect = 2e-32
 Identities = 129/511 (25%), Positives = 190/511 (37%), Gaps = 132/511 (25%)

Query: 78  TYKEVYEEVLQIVSALRASGAEPGCRVGIYGANCPQWVEAMEACNALSLICVPLYDTLGP 137
           TY E+ E V ++   L+  G   G RV +Y  N PQ+V A  A      + VP+      
Sbjct: 3   TYAELLELVDRLAGLLQEKGVRKGDRVALYMQNSPQFVIAYYAILRAGAVVVPVNPMNRE 62

Query: 138 GAVNFILDHAEIDFVFVQDKKVKELLSPDCRSAQRLRVMVCFTSLTAEQKEMAVQTGIKP 197
             +  IL+ +                          RV++  + L               
Sbjct: 63  AELEHILNDSG------------------------ARVLIVGSEL--------------- 83

Query: 198 YSWDEFLHLGKVNEMEILPPQPFNICTIMYTSGTSGDPKGVVLTHET-IATFVSGVDLFL 256
                       +++ ++P          YTSGT+G PKG + TH T +AT  +      
Sbjct: 84  ------------DDVAVIP----------YTSGTTGLPKGCMHTHRTVLATAAASAAWSG 121

Query: 257 DQFEDKMTVDDVYLSFLPLAHILDRVIEEYFFRRGASVGYYHGDLNALRDDLMELKPTLL 316
                 +T D V L+FLPL H+                G     +NA           + 
Sbjct: 122 ------LTPDSVLLAFLPLFHV---------------AGMQGS-MNA----------PIY 149

Query: 317 AGVPRVFEKIHEGIKKALEELRPLRRRIFDALYKYKL-AWMNMGYKQREASPLADLLAFR 375
            G   V               R  R     A+ +Y++  W N+       + + DLLA  
Sbjct: 150 TGATLVLLT------------RWDREAAARAIERYRVTHWTNI------VTMVVDLLAHP 191

Query: 376 KVKARLGGRLRLVISGGAPLSTEVEEFLRVTCCAFLVQGYGLTETCGPTTVCFPDEMCMV 435
           +        L++V  GGA L   V E L+        +GYGLTET   T    PD     
Sbjct: 192 RFADYDLSSLKVVGGGGAALPPAVAERLKALTGLLYEEGYGLTETHTCTHFNPPDRPKPQ 251

Query: 436 GTAGPVSVYSELRLEEVPEMGYSPLDDPPCGEVCVRGKTLFSGYYKNPDLTRESII---- 491
               PV   ++ R+ + PE G   L     GE+ VRG  +F GY+  P+ T ES I    
Sbjct: 252 CLGIPVF-GTDARVID-PETG-EELPPGEEGEIVVRGPQVFKGYWNRPEATAESFIELDG 308

Query: 492 DGWFHTGDIGQILPNGVVKIIDRKKNLIKISQGEYVALEYLENVYCVAPIIEDIWVYG-- 549
             +F TGD+G I   G    +DR K +I +S G  V    +E +    P + ++ V G  
Sbjct: 309 KRFFRTGDLGYIDEEGYFFFLDRVKRMINVS-GYKVWPAEVEALLYQHPAVLEVCVIGRP 367

Query: 550 DSLKSMLV-AVVVP--------CEEDTKKWA 571
           D  +  +V A VV          EED  +W 
Sbjct: 368 DPRRGEVVKAFVVLKPDYRGKVTEEDIIEWC 398

The members of this family are putative long-chain fatty acyl-CoA synthetases, which catalyze the ATP-dependent activation of fatty acids in a two-step reaction. The carboxylate substrate first reacts with ATP to form an acyl-adenylate intermediate, which then reacts with CoA to produce an acyl-CoA ester. Fatty acyl-CoA synthetases are responsible for fatty acid degradation as well as physiological regulation of cellular functions via the production of fatty acyl-CoA esters. Length = 430

>gnl|CDD|162605 TIGR01923, menE, O-succinylbenzoate-CoA ligase

 Score =  128 bits (324), Expect = 6e-32
 Identities = 108/499 (21%), Positives = 173/499 (34%), Gaps = 128/499 (25%)

Query: 78  TYKEVYEEVLQIVSALRASGAEPGCRVGIYGANCPQWVEAMEACNALSLICVPLYDTLGP 137
           T++++  E   +  AL+A G   G RV + G N  + V  + AC  L      L   L  
Sbjct: 1   TWQDLDCEAAHLAKALKAQGIRSGSRVALVGQNSIEMVLLLHACLLLGAEIAMLNTRLTE 60

Query: 138 GAVNFILDHAEIDFVFVQDKKVKELLSPDCRSAQRLRVMVCFTSLTAEQKEMAVQTGIKP 197
                 L+  ++  +       ++    D  S  R+            +     +T +  
Sbjct: 61  NERTNQLEDLDVQLLLTDSLLEEKDFQAD--SLDRI------------EAAGRYETSLSA 106

Query: 198 YSWDEFLHLGKVNEMEILPPQPFNICTIMYTSGTSGDPKGVVLTHETIATFVSGVDLFLD 257
               +                   I T+M+TSGT+G PK V  T         G    L 
Sbjct: 107 SFNMD------------------QIATLMFTSGTTGKPKAVPHTFRNHYASAVGSKENL- 147

Query: 258 QFEDKMTVDDVYLSFLPLAHILDRVIEEYFFR---RGASVGYYHGDLNALRDDLMELKPT 314
                 T DD +L  LPL HI    I    FR    GA++       N L + +   + T
Sbjct: 148 ----GFTEDDNWLLSLPLYHISGLSI---LFRWLIEGATL-RIVDKFNQLLEMIANERVT 199

Query: 315 LLAGVPRVFEKIHEGIKKALEELRPLRRRIFDALYKYKLAWMNMGYKQREASPLADLLAF 374
            ++ VP                               +L  +                  
Sbjct: 200 HISLVPT------------------------------QLNRL------------------ 211

Query: 375 RKVKARLGG-RLRLVISGGAPLSTEVEEF---LRVTCCAFLVQGYGLTETCGPTTVC-FP 429
             +        LR ++ GG+ +   + E      +     +   YG+TETC  + V    
Sbjct: 212 --LDEGGHNENLRKILLGGSAIPAPLIEEAQQYGLP----IYLSYGMTETC--SQVTTAT 263

Query: 430 DEMCM-VGTAGPVSVYSELRLEEVPEMGYSPLDDPPCGEVCVRGKTLFSGYYKNPDLTRE 488
            EM       G      E++++   + G+        GE+ V+G  L  GY    +LT  
Sbjct: 264 PEMLHARPDVGRPLAGREIKIKVDNKEGH--------GEIMVKGANLMKGYLYQGELTPA 315

Query: 489 SIIDGWFHTGDIGQILPNGVVKIIDRKKNLIKISQGEYVALEYLENVYCVAPIIEDIWVY 548
               GWF+TGDIG++   G + ++ R+ +LI IS G        EN+Y     IE + +Y
Sbjct: 316 FEQQGWFNTGDIGELDGEGFLYVLGRRDDLI-ISGG--------ENIYPEE--IETV-LY 363

Query: 549 GDSLKSMLVAVVVPCEEDT 567
                 +  AVVVP  +  
Sbjct: 364 --QHPGIQEAVVVPKPDAE 380

This model represents an enzyme, O-succinylbenzoate-CoA ligase, which is involved in the fourth step of the menaquinone biosynthesis pathway. O-succinylbenzoate-CoA ligase, together with menB - naphtoate synthase, take 2-succinylbenzoate and convert it into 1,4-di-hydroxy-2- naphtoate [Biosynthesis of cofactors, prosthetic groups, and carriers, Menaquinone and ubiquinone]. Length = 436

>gnl|CDD|223442 COG0365, Acs, Acyl-coenzyme A synthetases/AMP-(fatty) acid ligases [Lipid metabolism]

 Score =  130 bits (328), Expect = 7e-32
 Identities = 110/543 (20%), Positives = 187/543 (34%), Gaps = 100/543 (18%)

Query: 41  LNTAWDIFSMSVQKYPGNRMLGWRPFVDGKFGPYVWKTYKEVYEEVLQIVSALRASGAEP 100
           LN A +     ++    +       F           TY ++  EV ++ +AL+  G   
Sbjct: 8   LNLALNALDRHLEADRPDDTAII--FDGEDGLFREL-TYGDLRREVARLANALKDLGGVK 64

Query: 101 GCRVGIYGANCPQWVEAMEACNALSLICVPLYDTLGPGAVNFILDHAEIDFVFVQDKKVK 160
           G RV IY  N P+ V A+ A   +  I   +   L   AV   +       +   D    
Sbjct: 65  GDRVAIYMPNSPEAVIALLATARIGAIPAVVSPGLSAEAVADRIADLGPKVLIADD---- 120

Query: 161 ELLSPDCRSAQRLRVMVCFTSLTAEQKEMAVQTGIKPYSWDEFLHLGKVNEMEILPPQPF 220
                   + +  + +              V        +DE +        E    +P 
Sbjct: 121 -------GTFRNGKEIA-LLEDADAVLSSVVVVPRLGLWYDEAVE----KASEKFEFEPL 168

Query: 221 N---ICTIMYTSGTSGDPKGVVLTHETIATFVSGVDLFLDQFEDKMTVDDVYLSFLPLAH 277
                  ++YTSGT+G PKG+V +H                 +      D + +      
Sbjct: 169 PADDPLFLLYTSGTTGKPKGIVHSHGGYLVEHRLT--AKFHGDLLP--GDRFWNSSDPGW 224

Query: 278 ILDRVIEEYFFRRGASVGYYHGDLNALRDDLMELKPTLLAGVPRVFEKIHEGIKKALEEL 337
           I                G ++   + L            +G   V    ++G      E 
Sbjct: 225 I---------------YGLWYSVFSPL-----------ASGATTVL---YDGRPFYSPE- 254

Query: 338 RPLRRRIFDALYKYKLAWMNMGYKQREASP--LADLLAFRKVKARLGGRLRLVISGGAPL 395
                R+++AL KYK+            SP  L  L+     +      LR++ S G PL
Sbjct: 255 -----RLWEALEKYKVT-------IFGTSPTFLRRLMKLGLGEPYDLSSLRVLGSAGEPL 302

Query: 396 STEV-EEFLRVTCCAFLVQGYGLTETCGPTTVCFPDEMCMVGTAGPVSVYSELRLEEVPE 454
           + E  E F       +++  YG TET        P      G++G            +P 
Sbjct: 303 NPEAFEWFYSALGV-WILDIYGQTETGMGFIAGRPP--VKNGSSG------------LPL 347

Query: 455 MGYSP--LDD--PPC----GEVCVRGKT--LFSGYYKNPDLTRESIIDGWFHTGDIGQIL 504
            GY+   +DD   P     GE+ VR     +   Y+ +P+  +E+    W+ TGD  +  
Sbjct: 348 PGYAVRRVDDEGNPVPPGVGELVVRLPWPGMALTYWNDPERYKEAYFGRWYRTGDWAERD 407

Query: 505 PNGVVKIIDRKKNLIKISQGEYVALEYLENVYCVAPIIEDIWVYG--DSLK-SMLVAVVV 561
            +G   +  R  ++IK+S G+ +    +E+V    P + +  V G  D  K  +++A VV
Sbjct: 408 EDGYFWLHGRSDDVIKVS-GKRIGPLEIESVLLAHPAVAEAAVVGVPDPGKGQIVLAFVV 466

Query: 562 PCE 564
              
Sbjct: 467 LAA 469

Length = 528

>gnl|CDD|168698 PRK06839, PRK06839, acyl-CoA synthetase; Validated

 Score =  128 bits (324), Expect = 1e-31
 Identities = 124/481 (25%), Positives = 193/481 (40%), Gaps = 92/481 (19%)

Query: 78  TYKEVYEEVLQIVSALRAS-GAEPGCRVGIYGANCPQWVEAMEACNALSLICVPLYDTLG 136
           TYK+++E V ++ + L      + G R+ I   N  +++  + A   +  I VPL   L 
Sbjct: 29  TYKQLHEYVSKVAAYLIYELNVKKGERIAILSQNSLEYIVLLFAIAKVECIAVPLNIRLT 88

Query: 137 PGAVNFILDHAEIDFVFVQDKKVKELLSPDCRSAQRLRVMVCFTSLTAEQKEMAVQTGIK 196
              + F L  +    +FV+       LS    S   ++ ++  TSL   + E        
Sbjct: 89  ENELIFQLKDSGTTVLFVEKTFQNMALSMQKVSY--VQRVISITSLK--EIEDRKIDNFV 144

Query: 197 PYSWDEFLHLGKVNEMEILPPQPFNICTIMYTSGTSGDPKGVVLTHETIATFVSGVDLFL 256
             +                    F IC   YTSGT+G PKG VLT E +  F + ++   
Sbjct: 145 EKNESA----------------SFIIC---YTSGTTGKPKGAVLTQENM--FWNALN--- 180

Query: 257 DQFEDKMTVDDVYLSFLPLAHILDRVIEEYFFRRGASVGYYHGDLNALRDDLMELKPTLL 316
           + F   +T+ D  +  LPL HI                    G +      L    PTL 
Sbjct: 181 NTFAIDLTMHDRSIVLLPLFHI--------------------GGIG-----LFAF-PTLF 214

Query: 317 AG----VPRVFEKIHEGIKKALEELRPLRRRIFDALYKYKLAWMNMGYKQREASPLADLL 372
           AG    VPR FE       KAL  +   +  +   +     A +N            +  
Sbjct: 215 AGGVIIVPRKFEP-----TKALSMIEKHKVTVVMGVPTIHQALIN--------CSKFETT 261

Query: 373 AFRKVKARLGGRLRLVISGGAPLSTE-VEEFLRVTCCAFLV-QGYGLTETCGPTTVCFPD 430
             + V        R   +GGAP   E + EF+      FL  QG+G+TET  PT     +
Sbjct: 262 NLQSV--------RWFYNGGAPCPEELMREFIDR---GFLFGQGFGMTET-SPTVFMLSE 309

Query: 431 EMCM--VGTAGPVSVYSELRLEEVPEMGYSPLDDPPCGEVCVRGKTLFSGYYKNPDLTRE 488
           E     VG+ G   ++ +  L +        + +   GE+ +RG  +   Y+  PD T E
Sbjct: 310 EDARRKVGSIGKPVLFCDYELID-ENKNKVEVGE--VGELLIRGPNVMKEYWNRPDATEE 366

Query: 489 SIIDGWFHTGDIGQILPNGVVKIIDRKKNLIKISQGEYVALEYLENVYCVAPIIEDIWVY 548
           +I DGW  TGD+ ++  +G V I+ RKK +I IS GE +    +E V      + ++ V 
Sbjct: 367 TIQDGWLCTGDLARVDEDGFVYIVGRKKEMI-ISGGENIYPLEVEQVINKLSDVYEVAVV 425

Query: 549 G 549
           G
Sbjct: 426 G 426

Length = 496

>gnl|CDD|235531 PRK05605, PRK05605, long-chain-fatty-acid--CoA ligase; Validated

 Score =  129 bits (326), Expect = 2e-31
 Identities = 155/588 (26%), Positives = 235/588 (39%), Gaps = 126/588 (21%)

Query: 35  PSVDSDLNTAWDIFSMSVQKYPGNRMLGWRPFVDGKFGPYVWKTYKEVYEEVLQIVSALR 94
             +D    T  D++  +V ++        RP +D  FG     TY E+ ++V +  + LR
Sbjct: 25  HDLDYGDTTLVDLYDNAVARFGD------RPALD-FFGATT--TYAELGKQVRRAAAGLR 75

Query: 95  ASGAEPGCRVGIYGANCPQWVEAMEACNALSLICV---PLYDT---LGPGAVNFILDH-A 147
           A G  PG RV I   NCPQ + A  A   L  + V   PLY       P       DH A
Sbjct: 76  ALGVRPGDRVAIVLPNCPQHIVAFYAVLRLGAVVVEHNPLYTAHELEHPFE-----DHGA 130

Query: 148 EIDFVF----------VQDKKVKELLSPDCRSA----QRLRVMVCFTSLTAEQKEMAVQT 193
            +  V+           +   ++ ++S +  +A    QRL + +   +L   +  +   T
Sbjct: 131 RVAIVWDKVAPTVERLRRTTPLETIVSVNMIAAMPLLQRLALRLPIPALRKARAAL---T 187

Query: 194 GIKP--YSWDEFLHLGKVNEMEILP---PQPFNICTIMYTSGTSGDPKGVVLTHETI-AT 247
           G  P    W+  +      +   +    P P ++  I+YTSGT+G PKG  LTH  + A 
Sbjct: 188 GPAPGTVPWETLVDAAIGGDGSDVSHPRPTPDDVALILYTSGTTGKPKGAQLTHRNLFAN 247

Query: 248 FVSG---VDLFLDQFEDKMTVDDVYLSFLPLAHI--LDRVIEEYFFRRGASVGYYHGDLN 302
              G   V    D         +  L+ LP+ H   L   +       G  V     D++
Sbjct: 248 AAQGKAWVPGLGDG-------PERVLAALPMFHAYGLTLCLTLAVSIGGELVLLPAPDID 300

Query: 303 ALRDDLMELKPTLLAGVPRVFEKIHEGIKKALEELRPLRRRIFDALYKYKLAWMNMGYKQ 362
            + D + +  PT L GVP ++EKI    + A E    L                      
Sbjct: 301 LILDAMKKHPPTWLPGVPPLYEKI---AEAAEERGVDLSG-------------------- 337

Query: 363 REASPLADLLAFRKVKARLGGRLRLVISGGAPLSTE-VEEFLRVTCCAFLVQGYGLTETC 421
                                 +R   SG   L    VE + ++T    LV+GYGLTET 
Sbjct: 338 ----------------------VRNAFSGAMALPVSTVELWEKLTG-GLLVEGYGLTET- 373

Query: 422 GPTTVCFPDEMCMVGT---AGPVSV---YSELRLEEVPEMGYSPLDDPPCGEVCVRGKTL 475
            P  V  P     +      G V V    +E+R+ + PE     + D   GE+ VRG  +
Sbjct: 374 SPIIVGNP-----MSDDRRPGYVGVPFPDTEVRIVD-PEDPDETMPDGEEGELLVRGPQV 427

Query: 476 FSGYYKNPDLTRESIIDGWFHTGDIGQILPNGVVKIIDRKKNLIKISQGEYVALEYLENV 535
           F GY+  P+ T +S +DGWF TGD+  +  +G ++I+DR K LI I+ G  V    +E V
Sbjct: 428 FKGYWNRPEETAKSFLDGWFRTGDVVVMEEDGFIRIVDRIKELI-ITGGFNVYPAEVEEV 486

Query: 536 YCVAPIIEDIWVYG---DSLKSMLVAVVVPC------EEDTKKWAYSN 574
               P +ED  V G   +     +VA VV         E  + +   +
Sbjct: 487 LREHPGVEDAAVVGLPREDGSEEVVAAVVLEPGAALDPEGLRAYCREH 534

Length = 573

>gnl|CDD|213300 cd05934, FACL_DitJ_like, Uncharacterized subfamily of fatty acid CoA ligase (FACL)

 Score =  125 bits (316), Expect = 6e-31
 Identities = 95/371 (25%), Positives = 133/371 (35%), Gaps = 98/371 (26%)

Query: 222 ICTIMYTSGTSGDPKGVVLTHETIATFVSGVDLFLDQFEDKMTVDDVYLSFLPLAHILDR 281
              I+YTSGT+G PKGV+LTH   A  +    L        +  DDV L+ LPL HI   
Sbjct: 83  TAAILYTSGTTGPPKGVLLTH---AQLLFAARLAARLLG--LRPDDVLLTPLPLFHI--- 134

Query: 282 VIEEYFFRRGASVGYYHGDLNALRDDLMELKPTLLAGVPRVFEKIHEGIKKALEELRPLR 341
                               NA       +   LL G   V           L       
Sbjct: 135 --------------------NAQ---AYSVYAALLVGATLVL----------LPRFSA-- 159

Query: 342 RRIFDALYKYKLAW-------MNMGYKQREASPLADLLAFRKVKARLGGRLRLVISGGAP 394
            R +D + K+             +  KQ  +    D              LR V     P
Sbjct: 160 SRFWDQVRKHGATVFNLLGAMAAILMKQPPSPDDRD------------HPLRFVFGAPLP 207

Query: 395 LSTEVEEFLRVTCCAF---LVQGYGLTETCGPTTVCFPDEMCMVGTAGPVSVYSELRL-- 449
            +     F       F   LV+GYG+TET  P     P +    G+ G      E+R+  
Sbjct: 208 -AAIWPAFEE----RFGVKLVEGYGMTETGVPIIA--PGDPAPPGSCGRPRPGVEVRIVD 260

Query: 450 ---EEVPEMGYSPLDDPPCGEVCVR---GKTLFSGYYKNPDLTRESIIDGWFHTGDIGQI 503
               EVP            GE+ VR      +F GYY  P+ T ++  +GWFHTGD G+ 
Sbjct: 261 EDGREVP-------PGEV-GELVVRPRRPWAMFKGYYGMPEATAKAWRNGWFHTGDRGRR 312

Query: 504 LPNGVVKIIDRKKNLIKISQGEYVALEYLENVYCVAPIIEDIWVYGDSLKS-------ML 556
             +G +  +DRKK+ I+   GE ++   +E      P + +  V    + S         
Sbjct: 313 DEDGFLYFVDRKKDAIRRR-GENISSYEVEAAILAHPAVAEAAVVA--VPSELGEDEVKA 369

Query: 557 VAVVVPCEEDT 567
           V V+ P E   
Sbjct: 370 VVVLRPGETLD 380

Fatty acyl-CoA ligases catalyze the ATP-dependent activation of fatty acids in a two-step reaction. The carboxylate substrate first reacts with ATP to form an acyl-adenylate intermediate, which then reacts with CoA to produce an acyl-CoA ester. This is a required step before free fatty acids can participate in most catabolic and anabolic reactions. Members of this family include DitJ from Pseudomonas and similar proteins. Length = 421

>gnl|CDD|169098 PRK07786, PRK07786, long-chain-fatty-acid--CoA ligase; Validated

 Score =  116 bits (293), Expect = 2e-27
 Identities = 132/513 (25%), Positives = 200/513 (38%), Gaps = 114/513 (22%)

Query: 78  TYKEVYEEVLQIVSALRASGAEPGCRVGIYGANCPQWVEAMEACNALSLICVPLYDTLGP 137
           T++E+ + V  +  AL   G   G RV I   N  ++VE++ A N L  I VP+   L P
Sbjct: 44  TWRELDDRVAALAGALSRRGVGFGDRVLILMLNRTEFVESVLAANMLGAIAVPVNFRLTP 103

Query: 138 GAVNFILDHAEIDFVFVQDKKVKELLSPDCRSAQRLRVMVCFTSLTAEQKEMAVQTGIKP 197
             + F++       V  +       ++   R    L   V     +++            
Sbjct: 104 PEIAFLVSDCGAHVVVTEA--ALAPVATAVRDIVPLLSTVVVAGGSSD------------ 149

Query: 198 YSWDEFLHLGKVNEMEILPPQPFNI-----CTIMYTSGTSGDPKGVVLTHETIAT----- 247
              D  L    +         P +I       IMYTSGT+G PKG VLTH  +       
Sbjct: 150 ---DSVLGYEDLLAEAGPAHAPVDIPNDSPALIMYTSGTTGRPKGAVLTHANLTGQAMTC 206

Query: 248 -FVSGVDLFLDQFEDKMTVDDVYLSFLPLAHILDRVIEEYFFRRGASVGYYHGDLNALRD 306
              +G D             DV    +PL HI             A +G           
Sbjct: 207 LRTNGAD----------INSDVGFVGVPLFHI-------------AGIG----------- 232

Query: 307 DLMELKPTLLAGVPRVFEKIHEGIKKALEELRPLRRRIFDALYKYKLAWMNMGYKQREAS 366
               + P LL G P V   I+      L    P   ++ D L   K+  + +   Q +A 
Sbjct: 233 ---SMLPGLLLGAPTV---IY-----PLGAFDP--GQLLDVLEAEKVTGIFLVPAQWQA- 278

Query: 367 PLADLLAFRKVKARLGGRLRLVISGGAPLSTEVEEFLRVTCCAF----LVQGYGLTETCG 422
               + A ++ + R    LR++  G AP S  +   LR     F    ++  +G TE   
Sbjct: 279 ----VCAEQQARPR-DLALRVLSWGAAPASDTL---LRQMAATFPEAQILAAFGQTEM-S 329

Query: 423 PTTVCF---PDEMCMVGTAGPVSVYSELRLEEVPEMGYSPLDD-----PP--CGEVCVRG 472
           P T C     D +  +G+ G V          +P +    +D+     P    GE+  R 
Sbjct: 330 PVT-CMLLGEDAIRKLGSVGKV----------IPTVAARVVDENMNDVPVGEVGEIVYRA 378

Query: 473 KTLFSGYYKNPDLTRESIIDGWFHTGDIGQILPNGVVKIIDRKKNLIKISQGEYVALEYL 532
            TL SGY+ NP+ T E+   GWFH+GD+ +    G V ++DRKK++I IS GE +    +
Sbjct: 379 PTLMSGYWNNPEATAEAFAGGWFHSGDLVRQDEEGYVWVVDRKKDMI-ISGGENIYCAEV 437

Query: 533 ENVYCVAPIIEDIWVYG---DSLKSMLVAVVVP 562
           ENV    P I ++ V G   +    + VAV   
Sbjct: 438 ENVLASHPDIVEVAVIGRADEKWGEVPVAVAAV 470

Length = 542

>gnl|CDD|237145 PRK12583, PRK12583, acyl-CoA synthetase; Provisional

 Score =  114 bits (287), Expect = 1e-26
 Identities = 141/547 (25%), Positives = 205/547 (37%), Gaps = 124/547 (22%)

Query: 78  TYKEVYEEVLQIVSALRASGAEPGCRVGIYGANCPQWVEAMEACNALSLICVPLYDTLGP 137
           T++++ + V ++   L A G +PG RVGI+  NC +W+    A   +  I V +      
Sbjct: 47  TWRQLADAVDRLARGLLALGVQPGDRVGIWAPNCAEWLLTQFATARIGAILVNINPAYRA 106

Query: 138 GAVNFILDHAEIDFVFVQDK--------KVKELLSPDCRSAQ----------RLRVMVCF 179
             + + L  + + +V   D          ++ELL P     Q           LR +V  
Sbjct: 107 SELEYALGQSGVRWVICADAFKTSDYHAMLQELL-PGLAEGQPGALACERLPELRGVVSL 165

Query: 180 TSLTAEQKEMAVQTGIKPYSWDEFLHLGKVNEMEIL--------PPQPFNICTIMYTSGT 231
               A               W E    G+    E L           P NI    YTSGT
Sbjct: 166 AP--APPPGFLA--------WHELQARGETVSREALAERQASLDRDDPINI---QYTSGT 212

Query: 232 SGDPKGVVLTHETIAT--FVSGVDLFLDQFEDKMTVDDVYLSFLPLAHILDRVIEEYF-F 288
           +G PKG  L+H  I    +     L L +  D++ V       +PL H    V+      
Sbjct: 213 TGFPKGATLSHHNILNNGYFVAESLGLTE-HDRLCVP------VPLYHCFGMVLANLGCM 265

Query: 289 RRGASVGY--YHGDLNALRDDLMELKPTLLAGVPRVFEKIHEGIKKALEELRPLRRRIFD 346
             GA + Y     D  A    + E + T L GVP +F          + EL   +R  FD
Sbjct: 266 TVGACLVYPNEAFDPLATLQAVEEERCTALYGVPTMF----------IAELDHPQRGNFD 315

Query: 347 ALYKYKLAWMNMGYKQREASPLADLLAFRKVKARLGGRLRLVISGGAPLSTEVEEFLRVT 406
                                                 LR  I  GAP   EV    RV 
Sbjct: 316 L-----------------------------------SSLRTGIMAGAPCPIEVMR--RVM 338

Query: 407 C---CAFLVQGYGLTETCGPTTVCFPDEMC--MVGTAGPVSVYSELRLEEVPEMGYSPLD 461
                A +   YG+TET   +      +     V T G    + E+++ + P+    P  
Sbjct: 339 DEMHMAEVQIAYGMTETSPVSLQTTAADDLERRVETVGRTQPHLEVKVVD-PDGATVPRG 397

Query: 462 DPPCGEVCVRGKTLFSGYYKNPDLTRESII-DGWFHTGDIGQILPNGVVKIIDRKKNLIK 520
           +   GE+C RG ++  GY+ NP+ T ESI  DGW HTGD+  +   G V+I+ R K++I 
Sbjct: 398 E--IGELCTRGYSVMKGYWNNPEATAESIDEDGWMHTGDLATMDEQGYVRIVGRSKDMI- 454

Query: 521 ISQGEYVALEYLENVYCVAPIIEDIWVYGDSLKSMLVAVVVPCE---EDTKKWA-YSNGH 576
           I  GE +    +E      P + D+ V+G           VP E   E+   W     GH
Sbjct: 455 IRGGENIYPREIEEFLFTHPAVADVQVFG-----------VPDEKYGEEIVAWVRLHPGH 503

Query: 577 AGSFLEL 583
           A S  EL
Sbjct: 504 AASEEEL 510

Length = 558

>gnl|CDD|213292 cd05926, FACL_fum10p_like, Subfamily of fatty acid CoA ligase (FACL) similar to Fum10p of Gibberella moniliformis

 Score =  109 bits (275), Expect = 4e-26
 Identities = 96/363 (26%), Positives = 143/363 (39%), Gaps = 85/363 (23%)

Query: 225 IMYTSGTSGDPKGVVLTHETIATFVSGVDLFLDQFEDKMTVDDVYLSFLPLAHILDRVIE 284
           I++TSGT+G PKGV LTH+ +      +         K+T  D  L+ +PL HI      
Sbjct: 7   ILHTSGTTGRPKGVPLTHKNLLASARNI-----AKSHKLTPSDRCLNVMPLFHI------ 55

Query: 285 EYFFRRGASVGYYHGDLNALRDDLMELKPTLLAG----VPRVFEKIHEGIKKALEELRPL 340
                        HG + +L         TLLAG     P  F                 
Sbjct: 56  -------------HGLIVSLL-------ATLLAGGSVVCPPKFSA--------------- 80

Query: 341 RRRIFDALYKYKLAWMNMGYKQREASP--LADLLAFRKVKARLG-GRLRLVISGGAPLST 397
             + +D + KY++ W +       A P     LL   K        RLR + S  APL  
Sbjct: 81  -SKFWDDIAKYRVTWYS-------AVPTIHQILLKTAKPNPGKPPPRLRFIRSASAPLPP 132

Query: 398 EV----EEFLRVTCCAFLVQGYGLTETCGPTTVCFPDEMCM--VGTAGPVSVYSELRLEE 451
            V    E+   V     +++ YG+TE         P    +   G+ G  +        E
Sbjct: 133 AVLDRLEKRFGVP----VLEAYGMTEAAHQIA-SNPLPPLVRKPGSVGRPAG------VE 181

Query: 452 VPEMG--YSPLDDPPCGEVCVRGKTLFSGYYKNPDLTRESIIDGWFHTGDIGQILPNGVV 509
           V  +     PL     GE+ +RG  + +GY  NP+  RE+  DGWF TGD+G +  +G +
Sbjct: 182 VAILDDDGRPLPPGQEGEIVIRGPNVTAGYLNNPEANREAFRDGWFRTGDLGYLDEDGYL 241

Query: 510 KIIDRKKNLIKISQGEYVALEYLENVYCVAPIIEDIWVYG---DSLKSMLVAVVVPCEED 566
            +  R K LI    GE ++   +E V    P + +  V+G   +     + A VV    D
Sbjct: 242 FLTGRIKELINRG-GEKISPREVEEVLLRHPAVAEAVVFGVPDELYGEEVAAAVVL-RAD 299

Query: 567 TKK 569
           +K 
Sbjct: 300 SKV 302

FACL catalyzes the formation of fatty acyl-CoA in a two-step reaction: the formation of a fatty acyl-AMP molecule as an intermediate, followed by the formation of a fatty acyl-CoA. This is a required step before free fatty acids can participate in most catabolic and anabolic reactions. Fum10p is a fatty acid CoA ligase involved in the synthesis of fumonisin, a polyketide mycotoxin, in Gibberella moniliformis. Length = 345

>gnl|CDD|233550 TIGR01733, AA-adenyl-dom, amino acid adenylation domain

 Score =  110 bits (278), Expect = 5e-26
 Identities = 110/477 (23%), Positives = 165/477 (34%), Gaps = 126/477 (26%)

Query: 78  TYKEVYEEVLQIVSALRAS-GAEPGCRVGIYGANCPQWVEAMEACNALSLICVPLYDTLG 136
           TY+E+ E   ++   LRA+ G  PG RV +      + V A+ A        VPL D   
Sbjct: 1   TYRELDERANRLARHLRAAGGVGPGDRVAVLLERSAELVVAILAVLKAGAAYVPL-DPAY 59

Query: 137 PGA-VNFILDHAEIDFVFVQDKKVKELLSPDCRSAQRLRVMVCFTSLTAEQKEMAVQTGI 195
           P   + FIL+ A    +         L          L   +   +L             
Sbjct: 60  PAERLAFILEDAGARLLLTDSALASRL--AGLVLPVILLDPLELAALDDAPAPPPPDA-- 115

Query: 196 KPYSWDEFLHLGKVNEMEILPPQPFNICTIMYTSGTSGDPKGVVLTHETIATFVSGVDLF 255
                               P  P ++  ++YTSG++G PKGVV+TH ++   ++ +   
Sbjct: 116 --------------------PSGPDDLAYVIYTSGSTGRPKGVVVTHRSLVNLLAWLARR 155

Query: 256 LDQFEDKMTVDDVYLSFLPLAHILDRVIEEYFFRRGASVGYYHGDLNALRDDLMELKPTL 315
                  +  DD  L F  L+   D           ASV               E+   L
Sbjct: 156 YG-----LDPDDRVLQFASLSF--D-----------ASV--------------EEIFGAL 183

Query: 316 LAG-----VPRVFEKIHEGIKKALEELRPLRRRIFDALYKYKLAWMNMGYKQREASP-LA 369
           LAG      P              +E R     +   + ++ +  +N        +P L 
Sbjct: 184 LAGATLVVPPE-------------DEERDDAALLAALIAEHPVTVLN-------LTPSLL 223

Query: 370 DLLAFRKVKARLGGRLRLVISGGAPLSTE-VEEFLRVTCCAFLVQGYGLTETCGPTTVCF 428
            LLA     A     LRLVI GG  L+   V+ +      A L+  YG TET   T    
Sbjct: 224 ALLAAALPPALAS--LRLVILGGEALTPALVDRWRARGPGARLINLYGPTET---TVWS- 277

Query: 429 PDEMCMVGTAGPVSVYSELRLEEVPEMGYSPLDDPPC---------------GEVCVRGK 473
                   TA  V      R   VP +G  PL +                  GE+ + G 
Sbjct: 278 --------TATLVDPDDAPRESPVP-IGR-PLANTRLYVLDDDLRPVPVGVVGELYIGGP 327

Query: 474 TLFSGYYKNPDLTRESIIDGWF---------HTGDIGQILPNGVVKIIDRKKNLIKI 521
            +  GY   P+LT E  +   F          TGD+ + LP+G ++ + R  + +KI
Sbjct: 328 GVARGYLNRPELTAERFVPDPFAGGDGARLYRTGDLVRYLPDGNLEFLGRIDDQVKI 384

This model represents a domain responsible for the specific recognition of amino acids and activation as adenylyl amino acids. The reaction catalyzed is aa + ATP -> aa-AMP + PPi. These domains are usually found as components of multi-domain non-ribosomal peptide synthetases and are usually called "A-domains" in that context (for a review, see ). A-domains are almost invariably followed by "T-domains" (thiolation domains, pfam00550) to which the amino acid adenylate is transferred as a thiol-ester to a bound pantetheine cofactor with the release of AMP (these are also called peptide carrier proteins, or PCPs. When the A-domain does not represent the first module (corresponding to the first amino acid in the product molecule) it is usually preceded by a "C-domain" (condensation domain, pfam00668) which catalyzes the ligation of two amino acid thiol-esters from neighboring modules. This domain is a subset of the AMP-binding domain found in Pfam (pfam00501) which also hits substrate--CoA ligases and luciferases. Sequences scoring in between trusted and noise for this model may be ambiguous as to whether they activate amino acids or other molecules lacking an alpha amino group. Length = 409

>gnl|CDD|215137 PLN02246, PLN02246, 4-coumarate--CoA ligase

 Score =  108 bits (272), Expect = 8e-25
 Identities = 114/365 (31%), Positives = 157/365 (43%), Gaps = 104/365 (28%)

Query: 227 YTSGTSGDPKGVVLTHETIATFVSG-VD-----LFLDQFEDKMTVDDVYLSFLPLAHI-- 278
           Y+SGT+G PKGV+LTH+ + T V+  VD     L+          DDV L  LP+ HI  
Sbjct: 186 YSSGTTGLPKGVMLTHKGLVTSVAQQVDGENPNLY-------FHSDDVILCVLPMFHIYS 238

Query: 279 LDRVIEEYFFRRGASVGYYHGDLNALRDDLMELKPTLLAGVPRVFE--KIHEGIKKALEE 336
           L+ V+                 L  LR     +   +L  +   FE   + E I++    
Sbjct: 239 LNSVL-----------------LCGLR-----VGAAIL--IMPKFEIGALLELIQRHKVT 274

Query: 337 LRPLRRRIFDALYKYKLAWMNMGYKQREASPLA---DLLAFRKVKARLGGRLRLVISGGA 393
           + P    I  A+ K               SP+    DL + R V            SG A
Sbjct: 275 IAPFVPPIVLAIAK---------------SPVVEKYDLSSIRMVL-----------SGAA 308

Query: 394 PLSTEVEEFLRVTC-CAFLVQGYGLTETCGPTTVCFPDEMCMV----------GTAGPVS 442
           PL  E+E+  R     A L QGYG+TE  GP        MC+           G+ G V 
Sbjct: 309 PLGKELEDAFRAKLPNAVLGQGYGMTEA-GPVL-----AMCLAFAKEPFPVKSGSCGTVV 362

Query: 443 VYSELRLEEVPEMGYSPLDDPPCGEVCVRGKTLFSGYYKNPDLTRESI-IDGWFHTGDIG 501
             +EL++ + PE G S L     GE+C+RG  +  GY  +P+ T  +I  DGW HTGDIG
Sbjct: 363 RNAELKIVD-PETGAS-LPRNQPGEICIRGPQIMKGYLNDPEATANTIDKDGWLHTGDIG 420

Query: 502 QILPNGVVKIIDRKKNLIKISQGEYVALEYLENVYCVAPIIEDIWVYGDSLKSMLVAVVV 561
            I  +  + I+DR K LIK  +G  VA   LE +    P I D             A VV
Sbjct: 421 YIDDDDELFIVDRLKELIKY-KGFQVAPAELEALLISHPSIAD-------------AAVV 466

Query: 562 PCEED 566
           P +++
Sbjct: 467 PMKDE 471

Length = 537

>gnl|CDD|213274 cd05906, A_NRPS_TubE_like, The adenylation domain (A domain) of a family of nonribosomal peptide synthetases (NRPSs) synthesizing toxins and antitumor agents

 Score =  108 bits (271), Expect = 1e-24
 Identities = 122/511 (23%), Positives = 197/511 (38%), Gaps = 107/511 (20%)

Query: 72  GPYVWKTYKEVYEEVLQIVSALRASGAEPGCRVGIYGANCPQWVEAMEACNALSLICVPL 131
           G   +++Y E+ EE  +I++ LRA G +PG  V +       +V A  AC     + VP+
Sbjct: 35  GSEEFQSYAELLEEAERILAGLRALGLKPGDSVILQLERNEDFVTAFWACVLGGFVPVPV 94

Query: 132 YDTLGPGAVNFILDHAEIDFVFVQDKKVKELL-SPDCRSAQRLRVMVCFTSLTAEQKEMA 190
                         + E +    + + + ELL SP   +   L   +      A  + + 
Sbjct: 95  ----AVPPT-----YDEPNAAVAKLRNIWELLGSPVILTDAALVAALAGLRTRAGLEALR 145

Query: 191 VQTGIKPYSWDEFLHLGKVNEMEILPPQPFNICTIMYTSGTSGDPKGVVLTHETIATFVS 250
           V    +  S      L         P +P +   ++ TSG++G PK VVLTH  I     
Sbjct: 146 VLAIEELRSAPPDAPL--------HPARPDDPALLLLTSGSTGVPKCVVLTHRNI----- 192

Query: 251 GVDLFLDQFEDKMTV-----DDVYLSFLPLAHILDRVIEEYFFRRGASVGYYHGDLNALR 305
                L +    + V     DDV L+++PL H+               +   H     LR
Sbjct: 193 -----LARSAGTVQVNGFTPDDVSLNWMPLDHV-------------GGIVMLH-----LR 229

Query: 306 DDLMELKPTLLAGVPRVFEKIHEGIKKALEELRPLRRRIFDALYKYKLA--WM-NMGYKQ 362
           D            V    ++IH      L +  PLR    D + +Y++   W  N  +  
Sbjct: 230 D------------VYLGCQQIHVPTDYILAD--PLR--WLDLIDRYRVTITWAPNFAFAL 273

Query: 363 REASPLADLLAFRKVKARLGGRLRLVISGGAPLSTEV-EEFLRVTC-----CAFLVQGYG 416
                L D L   + ++     LR +I+ G  +  +    FL +          +   +G
Sbjct: 274 -----LNDALERIEDRSWDLSSLRYIINAGEAVVAKTIRRFLELLAPYGLPADAIRPAFG 328

Query: 417 LTETCGPTTVC--FPDEMCMVGTA-----GPVSVYSELRLEEVP--EMGY---------- 457
           ++ETC   T    F       G       GP+   +    E V   E+G           
Sbjct: 329 MSETCSGVTYSRGFRTGPDTGGVLVDSLTGPLRFAAADHPEAVTFVELGRPIPGVAIRIV 388

Query: 458 ----SPLDDPPCGEVCVRGKTLFSGYYKNPDLTRESII-DGWFHTGDIGQILPNGVVKII 512
               + L +   G + VRG T+ SGYY+NP+   E+   DGWF TGD+G +  +G + I 
Sbjct: 389 DEDGALLPEGEVGRLQVRGPTVTSGYYRNPEANAEAFTEDGWFRTGDLGFL-HDGRLTIT 447

Query: 513 DRKKNLIKISQGEYVALEYLENVYCVAPIIE 543
            R+K++I I+   Y   E +E      P +E
Sbjct: 448 GREKDMIIINGVNYYNHE-IEAAVEQVPGVE 477

The adenylation (A) domain of NRPS recognizes a specific amino acid or hydroxy acid and activates it as an (amino)-acyl adenylate by hydrolysis of ATP. The activated acyl moiety then forms a thioester to the enzyme-bound cofactor phosphopantetheine of a peptidyl carrier protein domain. This family includes NRPSs that synthesize toxins and antitumor agents; for example, TubE for Tubulysine, CrpA for cryptophycin, TdiA for terrequinone A, KtzG for kutzneride, and Vlm1/Vlm2 for Valinomycin. Nonribosomal peptide synthetases are large multifunctional enzymes which synthesize many therapeutically useful peptides. NRPS has a distinct modular structure in which each module is responsible for the recognition, activation, and, in some cases, modification of a single amino acid residue of the final peptide product. The modules can be subdivided into domains that catalyze specific biochemical reactions. Length = 560

>gnl|CDD|236096 PRK07787, PRK07787, acyl-CoA synthetase; Validated

 Score =  104 bits (261), Expect = 1e-23
 Identities = 110/370 (29%), Positives = 142/370 (38%), Gaps = 90/370 (24%)

Query: 217 PQPFNICTIMYTSGTSGDPKGVVLTHETIATFVSGVDLFLDQFEDKMTVDDVYLSFLPLA 276
           P P     I+YTSGT+G PKGVVL+   IA     +D   + ++   T DDV +  LPL 
Sbjct: 125 PDPDAPALIVYTSGTTGPPKGVVLSRRAIAA---DLDALAEAWQ--WTADDVLVHGLPLF 179

Query: 277 HILDRVIEEY-FFRRGASV---------GYYHGDLNALRDDLMELKPTLLAGVPRVFEKI 326
           H+   V+      R G             Y            +    TL  GVP V+ +I
Sbjct: 180 HVHGLVLGVLGPLRIGNRFVHTGRPTPEAYAQA---------LSEGGTLYFGVPTVWSRI 230

Query: 327 HEGIKKALEELRPLRRRIFDALYKYKLAWMNMGYKQREASPLADLLAFRKVKARLGGRLR 386
                   E  R LR                                     ARL     
Sbjct: 231 AA----DPEAARALRG------------------------------------ARL----- 245

Query: 387 LVISGGAPLSTEVEEFLRVTCCAFLVQGYGLTETCGPTTVCFPDEMCMVGTAGPVSVYSE 446
           LV SG A L   V + L        V+ YG+TET   T     D     G  G      E
Sbjct: 246 LV-SGSAALPVPVFDRLAALTGHRPVERYGMTETL-ITLSTRADGERRPGWVGLPLAGVE 303

Query: 447 LRLEEVPEMGYS-PLDDPPCGEVCVRGKTLFSGYYKNPDLTRESII-DGWFHTGDIGQIL 504
            RL  V E G   P D    GE+ VRG TLF GY   PD T  +   DGWF TGD+  + 
Sbjct: 304 TRL--VDEDGGPVPHDGETVGELQVRGPTLFDGYLNRPDATAAAFTADGWFRTGDVAVVD 361

Query: 505 PNGVVKIIDRKK-NLIK-----ISQGEYVALEYLENVYCVAPIIEDIWVYG---DSLKSM 555
           P+G+ +I+ R+  +LIK     I  GE      +E      P + +  V G   D L   
Sbjct: 362 PDGMHRIVGRESTDLIKSGGYRIGAGE------IETALLGHPGVREAAVVGVPDDDLGQR 415

Query: 556 LVAVVVPCEE 565
           +VA VV  ++
Sbjct: 416 IVAYVVGADD 425

Length = 471

>gnl|CDD|213326 cd12118, ttLC_FACS_AEE21_like, Fatty acyl-CoA synthetases similar to LC-FACS from Thermus thermophiles and Arabidopsis

 Score =  103 bits (258), Expect = 4e-23
 Identities = 72/214 (33%), Positives = 103/214 (48%), Gaps = 38/214 (17%)

Query: 343 RIFDALYKYKLAWMNMGYKQREASP-----LADLLAFRKVKARLGGRLRLVISGGAPLST 397
            I+D + K+K+  +         +P     LA+  A    K  L   +R V++ GAP   
Sbjct: 246 AIYDLIEKHKVTHLC-------GAPTVLNMLAN--APEADKLPLPRPVR-VMTAGAPPPP 295

Query: 398 EVEEFLRVTCCAF-LVQGYGLTETCGPTTVCFP-DEMCMVGTAGPVSVYSELR------- 448
            V    ++    F +   YGLTET GP TVC    E      A P    + L+       
Sbjct: 296 AV--IKKMEELGFEVTHVYGLTETYGPITVCEWKPEW----DALPAEERARLKARQGVRY 349

Query: 449 --LEEV----PEMGYS-PLDDPPCGEVCVRGKTLFSGYYKNPDLTRESIIDGWFHTGDIG 501
             LEEV    PE     P D    GE+ +RG T+  GYYKNP+ T E+   GWFH+GD+ 
Sbjct: 350 VGLEEVDVVDPETMKDVPRDGKTIGEIVMRGNTVMKGYYKNPEATEEAFAGGWFHSGDLA 409

Query: 502 QILPNGVVKIIDRKKNLIKISQGEYVALEYLENV 535
            + P+G ++I DR K++I IS GE ++   +E V
Sbjct: 410 VVHPDGYIEIKDRSKDII-ISGGENISSIEVEGV 442

This family includes fatty acyl-CoA synthetases that can activate medium to long-chain fatty acids. These enzymes catalyze the ATP-dependent acylation of fatty acids in a two-step reaction. The carboxylate substrate first reacts with ATP to form an acyl-adenylate intermediate, which then reacts with CoA to produce an acyl-CoA ester. Fatty acyl-CoA synthetases are responsible for fatty acid degradation as well as physiological regulation of cellular functions via the production of fatty acyl-CoA esters. The fatty acyl-CoA synthetase from Thermus thermophiles in this family has been shown to catalyze the long-chain fatty acid, myristoyl acid. Also included in this family are acyl activating enzymes from Arabidopsis, which contains a large number of proteins from this family with up to 63 different genes, many of which are uncharacterized. Length = 520

>gnl|CDD|215464 PLN02860, PLN02860, o-succinylbenzoate-CoA ligase

 Score = 99.9 bits (249), Expect = 5e-22
 Identities = 141/640 (22%), Positives = 214/640 (33%), Gaps = 176/640 (27%)

Query: 57  GNRMLGWRPFVDGKFGPYVWKTYKEVYEEVLQIVSALRASGAEPGCRVGIYGANCPQWVE 116
           GNR      FVDG                VL + + L   G   G  V I   N   ++E
Sbjct: 29  GNRRRTGHEFVDG----------------VLSLAAGLLRLGLRNGDVVAIAALNSDLYLE 72

Query: 117 AMEACNALSLICVPLYDTLGPGAVNFILDHAEIDF--------VFVQDKKVK----ELLS 164
            + A      I  PL         N+     E           + V D+       EL +
Sbjct: 73  WLLAVACAGGIVAPL---------NYRWSFEEAKSAMLLVRPVMLVTDETCSSWYEELQN 123

Query: 165 PDCRSAQRLRVMVCFTS-------LTAEQKEMAVQTGIKP----YSWDEFLHLGKVNEME 213
               S    +V +   S        +    EM  Q  +      Y+W             
Sbjct: 124 DRLPSL-MWQVFLESPSSSVFIFLNSFLTTEMLKQRALGTTELDYAW------------- 169

Query: 214 ILPPQPFNICTIMYTSGTSGDPKGVVLTHETIATFVSGVDLFLDQFEDKMTV-----DDV 268
                P +   I +TSGT+G PKGV ++H  +            Q   K+ +     DDV
Sbjct: 170 ----APDDAVLICFTSGTTGRPKGVTISHSALIV----------QSLAKIAIVGYGEDDV 215

Query: 269 YLSFLPLAHILDRVIEEYFFRRGASVGYYHGDLNALRDDLMELKPTLLAGVPRVFEKIHE 328
           YL   PL HI                    G L++    LM        G   V      
Sbjct: 216 YLHTAPLCHI--------------------GGLSSALAMLM-------VGACHVL----- 243

Query: 329 GIKKALEELRPLRRRIFDALYKYKLAWMNMGYKQREASPL-------ADLLAF-RKVKAR 380
            + K            FDA    K A   +  KQ   + +       ADL++  RK    
Sbjct: 244 -LPK------------FDA----KAALQAI--KQHNVTSMITVPAMMADLISLTRKSMTW 284

Query: 381 LGGR-LRLVISGGAPLSTE-VEEFLRVTCCAFLVQGYGLTETCGPTTVCFPDEMCMVGTA 438
                +R +++GG  LS+  + +  ++   A L   YG+TE C   T     +  +    
Sbjct: 285 KVFPSVRKILNGGGSLSSRLLPDAKKLFPNAKLFSAYGMTEACSSLTFMTLHDPTLESPK 344

Query: 439 GPVSVYSELRLEEVP--------------EMGYSPLDDPPCGEVCVRGKTLFSGYYKNPD 484
             +   ++ +   V               E+     +    G +  RG  +  GY+    
Sbjct: 345 QTLQTVNQTKSSSVHQPQGVCVGKPAPHVELKIGLDESSRVGRILTRGPHVMLGYWGQNS 404

Query: 485 LTRESII-DGWFHTGDIGQILPNGVVKIIDRKKNLIKISQGEYVALEYLENVYCVAPIIE 543
            T   +  DGW  TGDIG I   G + +I R  + IK + GE V  E +E V    P + 
Sbjct: 405 ETASVLSNDGWLDTGDIGWIDKAGNLWLIGRSNDRIK-TGGENVYPEEVEAVLSQHPGVA 463

Query: 544 DIWVYGDSLKSMLVAVVVPCEEDTKKWAYSN---GHAGSFLELCSLVQLQNYILSELKNA 600
            + V G    S L  +VV C      W +S+    +A   L L S           L++ 
Sbjct: 464 SVVVVG-VPDSRLTEMVVACVRLRDGWIWSDNEKENAKKNLTLSS---------ETLRHH 513

Query: 601 AERNKLRGFEHIKGVILDPRPFDMERDLVTATLKKKRNKL 640
                L  F+  K  +   +PF      +T T K +R+++
Sbjct: 514 CREKNLSRFKIPKLFVQWRKPFP-----LTTTGKIRRDEV 548

Length = 563

>gnl|CDD|132249 TIGR03205, pimA, dicarboxylate--CoA ligase PimA

 Score = 99.6 bits (248), Expect = 6e-22
 Identities = 102/342 (29%), Positives = 150/342 (43%), Gaps = 67/342 (19%)

Query: 219 PFNICTIMYTSGTSGDPKGVVLTHETIATFVSGVDLFLDQFEDKMTVDDVY--LSFLPLA 276
           P ++  + YT GT+G PKG +LTH  + + VS  D++      + T  DV   +  LPL 
Sbjct: 191 PDDVALLQYTGGTTGLPKGAMLTHGNLTSAVSIYDVW--GKPSRATRGDVERVICVLPLF 248

Query: 277 HILD-RVIEEYFFRRGASVGYYHG-DLNALRDDLMELKPTLLAGVPRVFEKIHEGIKKAL 334
           HI    VI     RRG  +  +   D+ A+  D+ E + T+  GVP ++         AL
Sbjct: 249 HIYALTVILLRSLRRGDLISLHQRFDVAAVFRDIEEKRATVFPGVPTMW--------IAL 300

Query: 335 EELRPLRRRIFDALYKYKLAWMNMGYKQREASPLADLLAFRKVKARLGGRLRLVISGGAP 394
                L +R   +L                              A +G       SGGAP
Sbjct: 301 ANDPSLEKRDLSSL------------------------------ATIG-------SGGAP 323

Query: 395 LSTEVEEFLRVTCCAFLVQGYGLTETCGPTTVCFPDEMCMVGTAGPVSVYSELRLEEVPE 454
           L  EV  F        L  G+G+TETC P T   P+     G   P S+   L L  + E
Sbjct: 324 LPVEVANFFERKTGLKLKSGWGMTETCSPGTGHPPE-----GPDKPGSI--GLMLPGI-E 375

Query: 455 MGYSPLDDP----PCGEVC---VRGKTLFSGYYKNPDLTRESIIDGWFHTGDIGQILPNG 507
           +    LDDP    P GEV    +RG  +  GY+  P+ + E+ +   F TGDIG +  +G
Sbjct: 376 LDVVSLDDPTKVLPPGEVGELRIRGPNVTRGYWNRPEESAEAFVGDRFLTGDIGYMDTDG 435

Query: 508 VVKIIDRKKNLIKISQGEYVALEYLENVYCVAPIIEDIWVYG 549
              ++DRKK++I IS G  V  + +E      P ++++ V G
Sbjct: 436 YFFLVDRKKDMI-ISGGFNVYPQMIEQAIYEHPGVQEVIVIG 476

PimA, a member of a large family of acyl-CoA ligases, is found in a characteristic operon pimFABCDE for the metabolism of pimelate and related compounds. It is found, so far, in Bradyrhizobium japonicum and several strains of Rhodopseudomonas palustris. PimA from R. palustris was shown to be active as a CoA ligase for C(7) to C(14) dicarboxylates and fatty acids. Length = 541

>gnl|CDD|171961 PRK13295, PRK13295, cyclohexanecarboxylate-CoA ligase; Reviewed

 Score = 99.4 bits (248), Expect = 7e-22
 Identities = 132/503 (26%), Positives = 198/503 (39%), Gaps = 87/503 (17%)

Query: 78  TYKEVYEEVLQIVSALRASGAEPGCRVGIYGANCPQWVEAMEACNALSLICVPLYDTLGP 137
           TY+E+   V ++   L   G   G  V     N  ++     AC+ +  +  PL      
Sbjct: 57  TYRELAALVDRVAVGLARLGVGRGDVVSCQLPNWWEFTVLYLACSRIGAVLNPLMPIFRE 116

Query: 138 GAVNFILDHAEIDFVFVQDKKVKELLSPDCRSAQRLRVMVCFTSLTAEQKEMAVQTGIKP 197
             ++F+L HAE   V V  K  +         A+RLR            + + V  G   
Sbjct: 117 RELSFMLKHAESK-VLVVPKTFRGFDHA--AMARRLR------PELPALRHVVVVGGDGA 167

Query: 198 YSWDEFLHLGKVNEME-----ILP---PQPFNICTIMYTSGTSGDPKGVVLTHET----I 245
            S++  L +    E E     IL    P P ++  ++YTSGT+G+PKGV+ T  T    I
Sbjct: 168 DSFEALL-ITPAWEQEPDAPAILARLRPGPDDVTQLIYTSGTTGEPKGVMHTANTLMANI 226

Query: 246 ATFVSGVDLFLDQFEDKMTVDDVYLSFLPLAHILDRVIEEYFFRRGASVGYYHGDLNALR 305
             +   + L           DDV L   P+AH                 G+ +G      
Sbjct: 227 VPYAERLGL---------GADDVILMASPMAHQ---------------TGFMYG------ 256

Query: 306 DDLMELKPTLLAGVPRVFEKIHEGIKKALEELRPLRRRIFDALYKYKLAWMNMGYKQREA 365
              + + P +L G   V + I +   +A E +R              + +  M      +
Sbjct: 257 ---LMM-PVML-GATAVLQDIWD-PARAAELIRTEG-----------VTFT-MA-----S 293

Query: 366 SP-LADLLAFRKVKARLGGRLRLVISGGAPLSTEVEEFLRVTCCAFLVQGYGLTETCGPT 424
           +P L DL    K   R    LR  +  GAP+   + E  R    A +V  +G+TE    T
Sbjct: 294 TPFLTDLTRAVKESGRPVSSLRTFLCAGAPIPGALVERARAALGAKIVSAWGMTENGAVT 353

Query: 425 TVCF--PDEMCMVGTAGPVSVYSELRLEEVPEMGYSPLDDPPCGEVCVRGKTLFSGYYKN 482
                 PDE     T G      E+R   V +   +PL     G + VRG + F GY K 
Sbjct: 354 LTKLDDPDER-ASTTDGCPLPGVEVR---VVDADGAPLPAGQIGRLQVRGCSNFGGYLKR 409

Query: 483 PDLTRESIIDGWFHTGDIGQILPNGVVKIIDRKKNLIKISQGEYVALEYLENVYCVAPII 542
           P L      DGWF TGD+ +I  +G ++I  R K++I I  GE + +  +E +    P I
Sbjct: 410 PQLNGTDA-DGWFDTGDLARIDADGYIRISGRSKDVI-IRGGENIPVVEIEALLYRHPAI 467

Query: 543 EDIWV--YGDS-LKSMLVAVVVP 562
             + +  Y D  L     A VVP
Sbjct: 468 AQVAIVAYPDERLGERACAFVVP 490

Length = 547

>gnl|CDD|235923 PRK07059, PRK07059, Long-chain-fatty-acid--CoA ligase; Validated

 Score = 97.8 bits (244), Expect = 3e-21
 Identities = 92/313 (29%), Positives = 139/313 (44%), Gaps = 54/313 (17%)

Query: 216 PPQPFNICTIMYTSGTSGDPKGVVLTHETIATFVSGVDLFLDQFEDKMTVDD--VYLSFL 273
              P ++  + YT GT+G  KG  L H  I   V  ++ +L    +K    D   ++  L
Sbjct: 200 KLGPDDVAFLQYTGGTTGVSKGATLLHRNIVANVLQMEAWLQPAFEKKPRPDQLNFVCAL 259

Query: 274 PLAHILDRVIEEYFFRRGASVGYYHGDLNALRDDLMELKPTLLAGVPRVFEKIHEGIKKA 333
           PL HI    +          +G   G  N            +L   PR        I   
Sbjct: 260 PLYHIFALTV-------CGLLGMRTGGRN------------ILIPNPR-------DIPGF 293

Query: 334 LEELRPLRRRIFDALYKYKLAWMNMGYKQREASPLADLLAFRKVKARLGGRLRLVISGGA 393
           ++EL+  +  IF A+     A +N        +P  D L F K+    GG       G A
Sbjct: 294 IKELKKYQVHIFPAVNTLYNALLN--------NPDFDKLDFSKLIVANGG-------GMA 338

Query: 394 PLSTEVEEFLRVTCCAFLVQGYGLTETCGPTTVCFP-DEMCMVGTAG-PV-SVYSELRLE 450
                 E +L +T C  + +GYGL+ET  P   C P D     GT G P+ S    +R +
Sbjct: 339 VQRPVAERWLEMTGCP-ITEGYGLSET-SPVATCNPVDATEFSGTIGLPLPSTEVSIRDD 396

Query: 451 EVPEMGYSPLDDPPCGEVCVRGKTLFSGYYKNPDLTRESII-DGWFHTGDIGQILPNGVV 509
           +  ++   PL +P  GE+C+RG  + +GY+  PD T + +  DG+F TGD+G +   G  
Sbjct: 397 DGNDL---PLGEP--GEICIRGPQVMAGYWNRPDETAKVMTADGFFRTGDVGVMDERGYT 451

Query: 510 KIIDRKKNLIKIS 522
           KI+DRKK++I +S
Sbjct: 452 KIVDRKKDMILVS 464

Length = 557

>gnl|CDD|180666 PRK06710, PRK06710, long-chain-fatty-acid--CoA ligase; Validated

 Score = 97.8 bits (243), Expect = 3e-21
 Identities = 134/514 (26%), Positives = 207/514 (40%), Gaps = 82/514 (15%)

Query: 78  TYKEVYEEVLQIVSALRASGAEPGCRVGIYGANCPQWVEAMEACNALSLICV---PLYD- 133
           T+   +++V +  + L+  G E G RV I   NCPQ V           I V   PLY  
Sbjct: 51  TFSVFHDKVKRFANYLQKLGVEKGDRVAIMLPNCPQAVIGYYGTLLAGGIVVQTNPLYTE 110

Query: 134 -----TLGPGAVNFILDHAEIDFVFVQDKKVKELLSPDCRSAQRLRVMVCFTS------L 182
                 L       IL    +D VF +   V+     +     R+   + F        +
Sbjct: 111 RELEYQLHDSGAKVILC---LDLVFPRVTNVQSATKIEHVIVTRIADFLPFPKNLLYPFV 167

Query: 183 TAEQKEMAVQTGIKPYSWDEFLHLGKVNEMEI-----LPPQPFN-ICTIMYTSGTSGDPK 236
             +Q  + V+      S  E +HL    E E+     +P  P N +  + YT GT+G PK
Sbjct: 168 QKKQSNLVVKV-----SESETIHLWNSVEKEVNTGVEVPCDPENDLALLQYTGGTTGFPK 222

Query: 237 GVVLTHETIATFVSGVDLFLDQFEDKMTVDDVYLSFLPLAHILDRVIEEYFFRRGASVGY 296
           GV+LTH+ +   VS   + +    +    ++V L  LP  H+                  
Sbjct: 223 GVMLTHKNL---VSNTLMGVQWLYNCKEGEEVVLGVLPFFHV------------------ 261

Query: 297 YHGDLNALRDDLMELKPTLLAGVPRV-FEKIHEGIKKALEELRPLRRRIFDALYKYKLAW 355
            +G    +   +M+    +L  +P+   + + E IKK    L P    I+ AL       
Sbjct: 262 -YGMTAVMNLSIMQGYKMVL--IPKFDMKMVFEAIKKHKVTLFPGAPTIYIALLN----- 313

Query: 356 MNMGYKQREASPLADLLAFRKVKARLGGRLRLVISGGAPLSTEVEEFLRVTCCAFLVQGY 415
                     SPL        +K      +R  ISG APL  EV+E         LV+GY
Sbjct: 314 ----------SPL--------LKEYDISSIRACISGSAPLPVEVQEKFETVTGGKLVEGY 355

Query: 416 GLTETCGPTTVCFPDEMCMVGTAGPVSVYSELRLEEVPEMGYSPLDDPPCGEVCVRGKTL 475
           GLTE+   T   F  E  + G+ G     +E  +  + E G   L     GE+ V+G  +
Sbjct: 356 GLTESSPVTHSNFLWEKRVPGSIGVPWPDTEAMIMSL-ETG-EALPPGEIGEIVVKGPQI 413

Query: 476 FSGYYKNPDLTRESIIDGWFHTGDIGQILPNGVVKIIDRKKNLIKISQGEYVALEYLENV 535
             GY+  P+ T   + DGW HTGD+G +  +G   + DRKK++I ++ G  V    +E V
Sbjct: 414 MKGYWNKPEETAAVLQDGWLHTGDVGYMDEDGFFYVKDRKKDMI-VASGFNVYPREVEEV 472

Query: 536 YCVAPIIEDIWVYG--DSLKSMLVAVVVPCEEDT 567
                 ++++   G  D  +   V   V  +E T
Sbjct: 473 LYEHEKVQEVVTIGVPDPYRGETVKAFVVLKEGT 506

Length = 563

>gnl|CDD|213310 cd05945, DltA, D-alanine:D-alanyl carrier protein ligase (DltA)

 Score = 95.3 bits (238), Expect = 8e-21
 Identities = 87/366 (23%), Positives = 144/366 (39%), Gaps = 76/366 (20%)

Query: 225 IMYTSGTSGDPKGVVLTHETIATFVSGVDLFLDQFEDKMTVDDVYLSFLPLAHILDRVIE 284
           I++TSG++G PKGV ++H  +A+F+  +    D     +T  DV+ +  P          
Sbjct: 102 ILFTSGSTGKPKGVQISHANLASFLDWMVEDFD-----LTEGDVFSNQAPF--------- 147

Query: 285 EYFFRRGASVGYYHGDLNALRDDLMELKPTLLAG-----VPRVFEKIHEGIKKALEELRP 339
             F            DL+     + +L P L +G     +P+      E I   L     
Sbjct: 148 -SF------------DLS-----VFDLFPALASGATLYVIPK------EQIADPLA---- 179

Query: 340 LRRRIFDALYKYKLA-WMNMGYKQREASPLADLLAFRKVKARLGGRLRLVISGGAPLSTE 398
               +F+ L ++ L  W+++       S  + LL  R++       LR  +  G  L  +
Sbjct: 180 ----LFEFLKEHGLTVWVSV------PSFASLLLLSRELNPESLPSLRTFLFCGEVLPKK 229

Query: 399 -VEEFLRVTCCAFLVQGYGLTETCGPTT-VCFPDEMCMVGTAGPV---SVYSELRLEEVP 453
             +   R    A ++  YG TE     T      E   +    P+        LR   + 
Sbjct: 230 LAKALRRRFPNARIINLYGPTEATVAVTAYEVTPEP--LSRNEPLPIGYPKPGLRALILD 287

Query: 454 EMGYSPLDDPPCGEVCVRGKTLFSGYYKNPDLTRESIID----GWFHTGDIGQILPNGVV 509
           E G  P+     GE+ + G  +  GY  NP+ T ++        W+ TGD+  +  +G++
Sbjct: 288 EDG-RPVPPGEEGELVIAGPQVSPGYLNNPEKTAKAFFQDEGQRWYRTGDLVYLEDDGLL 346

Query: 510 KIIDRKKNLIKISQGEYVALEYLENVYCVAPIIED---IWVYGDSLKSMLVAVVVPCE-- 564
             + RK   IK+  G  + LE +E      P +E+   + V        LVA VV  E  
Sbjct: 347 VYLGRKDFQIKL-HGYRIELEEIEAALRALPGVEEAVVLPVPKGEKVVRLVAFVVGKEGA 405

Query: 565 EDTKKW 570
            DTK  
Sbjct: 406 LDTKAL 411

DltA belongs to the class I AMP-forming adenylation domain superfamily, which also includes acetyl-CoA synthetase, luciferase, and the adenylation domains of non-ribosomal synthetases. It catalyzes the two-step activation reaction of D-alanine: the formation of a substrate-AMP molecule as an intermediate, and then the transfer of the amino acid adenylate to teichoic acid in the biosynthesis of lipoteichoic acid (LTA) and wall teichoic acid (WTA) in gram-positive bacteria. Length = 447

>gnl|CDD|168170 PRK05677, PRK05677, long-chain-fatty-acid--CoA ligase; Validated

 Score = 96.0 bits (239), Expect = 9e-21
 Identities = 98/329 (29%), Positives = 145/329 (44%), Gaps = 58/329 (17%)

Query: 217 PQPFNICTIMYTSGTSGDPKGVVLTHET-IATFVSGVDLFLDQFEDKMTVDDVYLSFLPL 275
           PQ  ++  + YT GT+G  KG +LTH   +A  +    L      +     ++ ++ LPL
Sbjct: 204 PQADDVAVLQYTGGTTGVAKGAMLTHRNLVANMLQCRALMGSNLNEGC---EILIAPLPL 260

Query: 276 AHILDRVIEEYFFRRGASVGYYHGDLNALRDDLMELKPTLLAGVPRVFEKIHEGIKKALE 335
            HI       Y F          G+ N L  +            PR    +       ++
Sbjct: 261 YHI-------YAFTFHCMAMMLIGNHNILISN------------PRDLPAM-------VK 294

Query: 336 ELRPLRRRIFDALYKYKLAWMNMGYKQREASPLADLLAFRKVKARLGGRLRLVISGGAPL 395
           EL   +   F  L    +A  N      EA        FRK+       L+L +SGG  L
Sbjct: 295 ELGKWKFSGFVGLNTLFVALCN-----NEA--------FRKLDF---SALKLTLSGGMAL 338

Query: 396 STEV-EEFLRVTCCAFLVQGYGLTETCGPTTVCFPDEMCMVGTAG-PV-SVYSELRLEEV 452
                E +  VT CA   +GYG+TET  P     P +   VGT G PV S   ++  ++ 
Sbjct: 339 QLATAERWKEVTGCAIC-EGYGMTET-SPVVSVNPSQAIQVGTIGIPVPSTLCKVIDDDG 396

Query: 453 PEMGYSPLDDPPCGEVCVRGKTLFSGYYKNPDLTRESI-IDGWFHTGDIGQILPNGVVKI 511
            E+   PL +   GE+CV+G  +  GY++ P+ T E +  DGW  TGDI  I  +G ++I
Sbjct: 397 NEL---PLGEV--GELCVKGPQVMKGYWQRPEATDEILDSDGWLKTGDIALIQEDGYMRI 451

Query: 512 IDRKKNLIKISQGEYVALEYLENVYCVAP 540
           +DRKK++I +S G  V    LE+V    P
Sbjct: 452 VDRKKDMILVS-GFNVYPNELEDVLAALP 479

Length = 562

>gnl|CDD|235719 PRK06155, PRK06155, crotonobetaine/carnitine-CoA ligase; Provisional

 Score = 94.4 bits (235), Expect = 3e-20
 Identities = 126/524 (24%), Positives = 189/524 (36%), Gaps = 95/524 (18%)

Query: 59  RMLGWRPFVDGKFGPYVWKTYKEVYEEVLQIVSALRASGAEPGCRVGIYGANCPQWVEAM 118
                RP +   FG   W TY E          AL A+G + G RV +   N  ++++  
Sbjct: 32  ERYPDRPLL--VFGGTRW-TYAEAARAAAAAAHALAAAGVKRGDRVALMCGNRIEFLDVF 88

Query: 119 EACNALSLICVPLYDTLGPGAVNFILDHAEIDFVFVQDKKVKELLSPDCRSAQRLRVMVC 178
             C  L  I VP+   L    +  IL ++    + V+   +  L + D        V   
Sbjct: 89  LGCAWLGAIAVPINTALRGPQLEHILRNSGARLLVVEAALLAALEAADPGDLPLPAVW-- 146

Query: 179 FTSLTAEQKEMAVQTGIKPYSWDEFLHLGKVNEMEILPP---QPFNICTIMYTSGTSGDP 235
              L      ++V  G   +S      L         P    QP +   I+YTSGT+G  
Sbjct: 147 ---LLDAPASVSVPAG---WSTAPLPPLD-----APAPAAAVQPGDTAAILYTSGTTGPS 195

Query: 236 KGVVLTHETIATFV-----SGVDLFLDQFEDKMTVDDVYLSFLPLAHILDRVIEEYFFRR 290
           KGV   H   A F      S  DL +         DDV  + LPL H             
Sbjct: 196 KGVCCPH---AQFYWWGRNSAEDLEI-------GADDVLYTTLPLFHT------------ 233

Query: 291 GASVGYYHGDLNALRDDLMELKPTLLAGVPRVFEKIHEGIKKALEELRPLRRRIFDALYK 350
                      NAL          LLAG   V E             R      + A+ +
Sbjct: 234 -----------NALN----AFFQALLAGATYVLEP------------RFSASGFWPAVRR 266

Query: 351 YKLAWMNMGYKQREASPLADLLAFRKVKARLGGRLRLVISGGAPLSTEVEEFLRVTCCAF 410
           +      + Y       +  LL+    ++    R+R+ +  G P +     F R      
Sbjct: 267 HG---ATVTYLLGAMVSI--LLSQPARESDRAHRVRVALGPGVP-AALHAAF-RERFGVD 319

Query: 411 LVQGYGLTETCGPTTVCFPDEMCMVGTAGPVSVYSELRLEEVPEMGYSPLDDPPCGEVCV 470
           L+ GYG TET     V    +    G+ G ++   E R+  V E     L D   GE+ +
Sbjct: 320 LLDGYGSTETNFVIAVTHGSQ--RPGSMGRLAPGFEARV--VDEHD-QELPDGEPGELLL 374

Query: 471 RGKTLF---SGYYKNPDLTRESIIDGWFHTGDIGQILPNGVVKIIDRKKNLIKISQGEYV 527
           R    F   +GY+  P+ T E+  + WFHTGD      +G  + +DR K+ I+  +GE +
Sbjct: 375 RADEPFAFATGYFGMPEKTVEAWRNLWFHTGDRVVRDADGWFRFVDRIKDAIR-RRGENI 433

Query: 528 ALEYLENVYCVAPIIEDIWVYGDSLKSML----VAVVVPCEEDT 567
           +   +E V    P +    V+   + S L    V   V   + T
Sbjct: 434 SSFEVEQVLLSHPAVAAAAVF--PVPSELGEDEVMAAVVLRDGT 475

Length = 542

>gnl|CDD|180393 PRK06087, PRK06087, short chain acyl-CoA synthetase; Reviewed

 Score = 94.0 bits (234), Expect = 4e-20
 Identities = 93/364 (25%), Positives = 142/364 (39%), Gaps = 94/364 (25%)

Query: 225 IMYTSGTSGDPKGVVLTHETI----ATFVSGVDLFLDQFEDKMTVDDVYLSFLPLAHILD 280
           +++TSGT G PKGV+LTH  I      + + ++L         T  DV++   PL H   
Sbjct: 192 VLFTSGTEGLPKGVMLTHNNILASERAYCARLNL---------TWQDVFMMPAPLGH--- 239

Query: 281 RVIEEYFFRRGASVGYYHGDLNALRDDLMELKPTLLAGVPRVFEKIHEGIKKALEELRPL 340
                       + G+ HG           +    L G   V   I       L  L   
Sbjct: 240 ------------ATGFLHG-----------VTAPFLIGARSVLLDIFTP-DACLALLE-- 273

Query: 341 RRRIFDALYKYKLAWMNMGYKQREASP-LADLL-AFRKVKARLGGRLRLVISGGAPLSTE 398
                    + +   M +G     A+P + DLL    K  A L   LR  + GG  +  +
Sbjct: 274 ---------QQRCTCM-LG-----ATPFIYDLLNLLEKQPADLSA-LRFFLCGGTTIPKK 317

Query: 399 VEEFLRVTCC----AFLVQGYGLTETCGPTTVCFPDEMC--MVGTAG------PVSVYSE 446
           V        C      L+  YG TE+  P  V   D+     + T G       + V  E
Sbjct: 318 V-----ARECQQRGIKLLSVYGSTESS-PHAVVNLDDPLSRFMHTDGYAAAGVEIKVVDE 371

Query: 447 LRLEEVPEMGYSPLDDPPC-GEVCVRGKTLFSGYYKNPDLTRESI-IDGWFHTGDIGQIL 504
            R + +P         P C GE   RG  +F GY   P+LT  ++  +GW+++GD+ ++ 
Sbjct: 372 AR-KTLP---------PGCEGEEASRGPNVFMGYLDEPELTARALDEEGWYYSGDLCRMD 421

Query: 505 PNGVVKIIDRKKNLIKISQGEYVALEYLENVYCVAPIIEDIWVYG---DSLKSMLVAVVV 561
             G +KI  RKK++I +  GE ++   +E++    P I D  V     + L     A VV
Sbjct: 422 EAGYIKITGRKKDII-VRGGENISSREVEDILLQHPKIHDACVVAMPDERLGERSCAYVV 480

Query: 562 PCEE 565
               
Sbjct: 481 LKAP 484

Length = 547

>gnl|CDD|236169 PRK08162, PRK08162, acyl-CoA synthetase; Validated

 Score = 91.9 bits (229), Expect = 2e-19
 Identities = 49/128 (38%), Positives = 62/128 (48%), Gaps = 24/128 (18%)

Query: 415 YGLTETCGPTTVC--------FPDE-----MCMVGTAGP----VSVYSELRLEEVPEMGY 457
           YGLTET GP TVC         P +         G   P    V+V     ++ VP    
Sbjct: 327 YGLTETYGPATVCAWQPEWDALPLDERAQLKARQGVRYPLQEGVTVLDPDTMQPVPA--- 383

Query: 458 SPLDDPPCGEVCVRGKTLFSGYYKNPDLTRESIIDGWFHTGDIGQILPNGVVKIIDRKKN 517
              D    GE+  RG  +  GY KNP  T E+   GWFHTGD+  + P+G +KI DR K+
Sbjct: 384 ---DGETIGEIMFRGNIVMKGYLKNPKATEEAFAGGWFHTGDLAVLHPDGYIKIKDRSKD 440

Query: 518 LIKISQGE 525
           +I IS GE
Sbjct: 441 II-ISGGE 447

Length = 545

>gnl|CDD|171539 PRK12492, PRK12492, long-chain-fatty-acid--CoA ligase; Provisional

 Score = 92.2 bits (229), Expect = 2e-19
 Identities = 97/341 (28%), Positives = 145/341 (42%), Gaps = 73/341 (21%)

Query: 199 SWDEFLHLGKVNEMEILPPQPFNICTIMYTSGTSGDPKGVVLTHETIATFVSGVDLFLDQ 258
            + + L  G+   ++ +P    +I  + YT GT+G  KG +LTH  +   +  V   L Q
Sbjct: 186 PFKQALRQGRGLSLKPVPVGLDDIAVLQYTGGTTGLAKGAMLTHGNLVANMLQVRACLSQ 245

Query: 259 F-EDKMTV----DDVYLSFLPLAHILDRVIEEYFFRRGASVGYYHGDLNALRDDLMELKP 313
              D   +     +V ++ LPL HI       Y F          G+ N L  +      
Sbjct: 246 LGPDGQPLMKEGQEVMIAPLPLYHI-------YAFTANCMCMMVSGNHNVLITN------ 292

Query: 314 TLLAGVPRVFEKIHEGIKKALEELRPLRRRIFDALYKYKLAWMNM-GYKQREASPLADLL 372
                 PR        I   ++EL   R      L    +A M+  G+K  + S      
Sbjct: 293 ------PR-------DIPGFIKELGKWRFSALLGLNTLFVALMDHPGFKDLDFS------ 333

Query: 373 AFRKVKARLGGRLRLVISGGAPL-STEVEEFLRVTCCAFLVQGYGLTETCGPTTVCFP-D 430
                       L+L  SGG  L     E + ++T C  +V+GYGLTET  P     P  
Sbjct: 334 -----------ALKLTNSGGTALVKATAERWEQLTGCT-IVEGYGLTET-SPVASTNPYG 380

Query: 431 EMCMVGTAG-PVSVYSELRLEEVPEMGYSPLDDPPC-------GEVCVRGKTLFSGYYKN 482
           E+  +GT G PV           P      +DD          GE+C++G  +  GY++ 
Sbjct: 381 ELARLGTVGIPV-----------PGTALKVIDDDGNELPLGERGELCIKGPQVMKGYWQQ 429

Query: 483 PDLTRESI-IDGWFHTGDIGQILPNGVVKIIDRKKNLIKIS 522
           P+ T E++  +GWF TGDI  I P+G V+I+DRKK+LI +S
Sbjct: 430 PEATAEALDAEGWFKTGDIAVIDPDGFVRIVDRKKDLIIVS 470

Length = 562

>gnl|CDD|213309 cd05944, FACL_like_4, Uncharacterized subfamily of fatty acid CoA ligase (FACL)

 Score = 89.3 bits (222), Expect = 4e-19
 Identities = 76/314 (24%), Positives = 120/314 (38%), Gaps = 73/314 (23%)

Query: 222 ICTIMYTSGTSGDPKGVVLTHETIATFVSGVDLFLDQFEDKMTVDDVYLSFLPLAHI--- 278
           +    +T GT+G PK    +H           L        +   DV L+ LPL H+   
Sbjct: 4   LAAYFHTGGTTGAPKLARHSHRNEVANAWMAALLSG-----LGPGDVLLNGLPLFHVGGA 58

Query: 279 LDRVIEEYFFRRGASV------GYYHGDLNALRDDLMEL----KPTLLAGVPRVFEKIHE 328
           +   +      RGA+V      G+ +    A+  +  ++    + TLL+ VP V      
Sbjct: 59  IVTGLAP--LARGATVVLPTPSGFRN---PAVVANFWKIVERYRVTLLSAVPTV------ 107

Query: 329 GIKKALEELRPLRRRIFDALYKYKLAWMNMGYKQREASPLADLLAFRKVKARLGGRLRLV 388
                                                  LA LL      A +   LR  
Sbjct: 108 ---------------------------------------LAALLQVPLGDADIS-SLRYA 127

Query: 389 ISGGAPLSTEV-EEFLRVTCCAFLVQGYGLTETCGPTTVCFPDEMCMVGTAGPVSVYSEL 447
           ++G APL  EV   F  VT    +V+GYG+TE  G + +         G+ G    Y+ +
Sbjct: 128 LTGAAPLPVEVARRFEAVTGVP-VVEGYGMTEGTGVSAINPRGGPRRPGSVGLRLPYTRV 186

Query: 448 RLEEVPEMGYSPLDDPP--CGEVCVRGKTLFSGYYKNPDLTRESIIDGWFHTGDIGQILP 505
           R+ ++   G    D  P   G + +RG  +F GY  +       + DGW +TGD+G+I  
Sbjct: 187 RVAKLDAGGALGRDCAPGEVGVLAIRGPNVFPGYLNDAHNAGARLEDGWLNTGDLGRIDA 246

Query: 506 NGVVKIIDRKKNLI 519
           +G + +  R K+LI
Sbjct: 247 DGYLWLTGRAKDLI 260

Fatty acyl-CoA ligases catalyze the ATP-dependent activation of fatty acids in a two-step reaction. The carboxylate substrate first reacts with ATP to form an acyl-adenylate intermediate, which then reacts with CoA to produce an acyl-CoA ester. This is a required step before free fatty acids can participate in most catabolic and anabolic reactions. Length = 359

>gnl|CDD|181381 PRK08316, PRK08316, acyl-CoA synthetase; Validated

 Score = 90.0 bits (224), Expect = 6e-19
 Identities = 65/242 (26%), Positives = 93/242 (38%), Gaps = 35/242 (14%)

Query: 42  NTAWDIFSMSVQKYPGNRMLGWRPFVDGKFGPYVWKTYKEVYEEVLQIVSALRASGAEPG 101
            T  DI   S ++YP    L         FG   W TY E+   V ++ +AL   G + G
Sbjct: 11  QTIGDILRRSARRYPDKTAL--------VFGDRSW-TYAELDAAVNRVAAALLDLGLKKG 61

Query: 102 CRVGIYGANCPQWVEAMEACNALSLICVPLYDTLGPGAVNFILDHAEIDFVFVQDKKVKE 161
            RV   G N   +     AC     + VP+   L    + +ILDH+      V       
Sbjct: 62  DRVAALGHNSDAYALLWLACARAGAVHVPVNFMLTGEELAYILDHSGARAFLVDPA---- 117

Query: 162 LLSPDCRSAQRLRVMVCFTSLTAEQKEMAVQTGIKPYSWDEFLHLGKVNEMEILPPQPF- 220
            L+P   +A  L  +            + +     P  W +F    +   +    P    
Sbjct: 118 -LAPTAEAALALLPVDTLIL------SLVLGGREAPGGWLDFADWAEAGSVA--EPDVEL 168

Query: 221 ---NICTIMYTSGTSGDPKGVVLTHET-IATFVSG-VDLFLDQFEDKMTVDDVYLSFLPL 275
              ++  I+YTSGT   PKG +LTH   IA +VS  V          M+ DD+ L  LPL
Sbjct: 169 ADDDLAQILYTSGTESLPKGAMLTHRALIAEYVSCIVAG-------DMSADDIPLHALPL 221

Query: 276 AH 277
            H
Sbjct: 222 YH 223

Length = 523

>gnl|CDD|213312 cd05959, BCL_4HBCL, Benzoate CoA ligase (BCL) and 4-Hydroxybenzoate-Coenzyme A Ligase (4-HBA-CoA ligase)

 Score = 88.5 bits (220), Expect = 2e-18
 Identities = 114/499 (22%), Positives = 185/499 (37%), Gaps = 79/499 (15%)

Query: 78  TYKEVYEEVLQIVSALRASGAEPGCRVGIYGANCPQWVEAMEACNALSLICVPLYDTLGP 137
           TY E+ EEV +  +ALR  G E   RV +   + P++  A      +  + VP+   L P
Sbjct: 32  TYGELQEEVNRWGNALRELGIERENRVLLILLDTPEFPTAFWGAIKIGAVPVPINTLLTP 91

Query: 138 GAVNFILDHAEIDFVFVQDKKVKELLSPDCRSAQRLRVMVCFTSLTAEQKEMAVQTGIKP 197
               + L+ +    + +  +++ E+L P  +    LR ++            A       
Sbjct: 92  DDYRYYLNDSRARVLVI-SEELWEVLKPALQKDPHLRHVIVVGGAGPGALSYA------- 143

Query: 198 YSWDEFLHLGKVNEMEILPPQPFNICTIMYTSGTSGDPKGVVLTHETIATFVSGVDLFLD 257
               + +      E+E       ++   +Y+SG++G PKGVV  H  +       + +  
Sbjct: 144 ----QLIA-TAAEELEAAATSADDMAFWLYSSGSTGRPKGVVHLHHDMLVTA---EAYAK 195

Query: 258 QFEDKMTVDDVYLSF--LPLAHILDRVIEEYF-FRRGASVGYYHGDLNALR--DDLMELK 312
                +T DDV  S   L  A+ L   +  YF    GA+                +   K
Sbjct: 196 NVL-GITEDDVVFSAAKLFFAYGLGNGL--YFPLSVGATTVLMPERPTPDAVFATIERYK 252

Query: 313 PTLLAGVPRVFEKIHEGIKKALEELRPLRRRIFDALYKYKLAWMNMGYKQREASPLADLL 372
           PT+  GVP                           LY                   A +L
Sbjct: 253 PTVFFGVP--------------------------TLY-------------------AAML 267

Query: 373 AFRKVKARLGGRLRLVISGGAPLSTEVEEFLRVTCCAFLVQGYGLTETCGPTTVCFPDEM 432
           A  +   R    LRL +S G  L  E+    +      ++ G G TE         P   
Sbjct: 268 AAPEKPERDLSSLRLCVSAGEALPAEIGYRWKELFGLEILDGIGSTEMLHIFLSNRPGA- 326

Query: 433 CMVGTAG-PVSVYSELRLEEVPEMGYSPLDDPPCGEVCVRGKTLFSGYYKNPDLTRESII 491
              GT+G PV  Y E++L  V E G   + D   GE+ VRG +  +GY+   + TRE+ +
Sbjct: 327 VKYGTSGKPVPGY-EVKL--VDEDG-EEVADGEIGELWVRGDSSAAGYWNRREKTRETFV 382

Query: 492 DGWFHTGDIGQILPNGVVKIIDRKKNLIKISQGEYVALEYLENVYCVAPIIEDIWVYGDS 551
             W  TGD      +G      R  +++K+S G +V+   +E+     P + +  V G  
Sbjct: 383 GEWTRTGDKYYRDEDGYYWYCGRSDDMLKVS-GIWVSPFEVEDALLQHPAVLEAAVVGAE 441

Query: 552 LKSMLV---AVVVPCEEDT 567
            +  L    A VV  +   
Sbjct: 442 DEDGLTKPKAFVVLKDGYQ 460

Benzoate CoA ligase and 4-hydroxybenzoate-coenzyme A ligase catalyze the first activating step for benzoate and 4-hydroxybenzoate catabolic pathways, respectively. Although these two enzymes share very high sequence homology, they have their own substrate preference. The reaction proceeds via a two-step process; the first ATP-dependent step forms the substrate-AMP intermediate, while the second step forms the acyl-CoA ester, releasing the AMP. Aromatic compounds represent the second most abundant class of organic carbon compounds after carbohydrates. Some bacteria can use benzoic acid or benzenoid compounds as the sole source of carbon and energy through degradation. Benzoate CoA ligase and 4-hydroxybenzoate-Coenzyme A ligase are key enzymes of this process. Length = 506

>gnl|CDD|213326 cd12118, ttLC_FACS_AEE21_like, Fatty acyl-CoA synthetases similar to LC-FACS from Thermus thermophiles and Arabidopsis

 Score = 88.1 bits (219), Expect = 3e-18
 Identities = 56/203 (27%), Positives = 88/203 (43%), Gaps = 17/203 (8%)

Query: 78  TYKEVYEEVLQIVSALRASGAEPGCRVGIYGANCPQWVEAMEACNALSLICVPLYDTLGP 137
           TY+E Y+   ++ SAL   G   G  V +   N P  +EA         + VPL   L  
Sbjct: 31  TYRETYDRCRRLASALSKLGIGKGDVVAVLAPNTPAMLEAHFGVPMAGAVLVPLNTRLDA 90

Query: 138 GAVNFILDHAEIDFVFVQDKKVKELLSPDCRSAQ---RLRVMVCFTSLTAEQKEMAVQTG 194
             + FIL+H+E   +FV D++   L             +   +   S  AE  E      
Sbjct: 91  DDIAFILNHSEAKVLFV-DQEFLSLAEEALALLSTKEIIDTEIIVISPAAEDSEE----- 144

Query: 195 IKPYSWDEFLHLGKVNEMEILPPQPFNICTIMYTSGTSGDPKGVVLTHETIATFVSGVDL 254
                +++ L  G  + + I P   ++  ++ YTSGT+G+PKGVV TH     +++ +  
Sbjct: 145 ---GDYEDLLAGGDPDPLPIPPDDEWDPISLNYTSGTTGNPKGVVYTHR--GAYLNALGN 199

Query: 255 FLDQFEDKMTVDDVYLSFLPLAH 277
            +   E  M    VYL  LP+ H
Sbjct: 200 VI---EWGMPDRPVYLWTLPMFH 219

This family includes fatty acyl-CoA synthetases that can activate medium to long-chain fatty acids. These enzymes catalyze the ATP-dependent acylation of fatty acids in a two-step reaction. The carboxylate substrate first reacts with ATP to form an acyl-adenylate intermediate, which then reacts with CoA to produce an acyl-CoA ester. Fatty acyl-CoA synthetases are responsible for fatty acid degradation as well as physiological regulation of cellular functions via the production of fatty acyl-CoA esters. The fatty acyl-CoA synthetase from Thermus thermophiles in this family has been shown to catalyze the long-chain fatty acid, myristoyl acid. Also included in this family are acyl activating enzymes from Arabidopsis, which contains a large number of proteins from this family with up to 63 different genes, many of which are uncharacterized. Length = 520

>gnl|CDD|223951 COG1020, EntF, Non-ribosomal peptide synthetase modules and related proteins [Secondary metabolites biosynthesis, transport, and catabolism]

 Score = 88.5 bits (219), Expect = 3e-18
 Identities = 93/455 (20%), Positives = 152/455 (33%), Gaps = 95/455 (20%)

Query: 78  TYKEVYEEVLQIVSALRASGAEPGCRVGIYGANCPQWVEAMEACNALSLICVPLYDTLGP 137
           TY E+     ++   L + G  PG  V I      + V A+ A        VPL      
Sbjct: 254 TYAELDARANRLARLLISLGVGPGETVAILADRSLELVVALLAVLKAGAAYVPLDPLYPA 313

Query: 138 GAVNFILDHAEIDFVFVQDKKVKELLSPDCRSAQRLRVMVCFTSLTAEQKEMAVQTGIKP 197
             + +IL+ +    +  Q       L  D      L                A+   +  
Sbjct: 314 ERLAYILEDSRPTLLLTQ-----AHLRVDDVGLPGL----------------ALDDALSE 352

Query: 198 YSWDEFLHLGKVNEMEILPPQPFNICTIMYTSGTSGDPKGVVLTHETIATFVSGVDLFLD 257
               + +    + +          +  I+YTSG++G PKGV + H  +A  ++       
Sbjct: 353 IPDTDPIPQALLGD---------ALAYIIYTSGSTGQPKGVRIEHRALANLLNDAG---A 400

Query: 258 QFEDKMTVDDVYLSFLPLAHILDRVIEEYFFRR--GASV----GYYHGDLNALRDDLMEL 311
           +F   +  DD  L+   L+   D  + E F     GA +         D  AL + L   
Sbjct: 401 RFG--LDADDRVLALASLS--FDASVFEIFGALLEGARLVLAPALLQVDPAALLELLEAQ 456

Query: 312 KPTLLAGVPRVFEKIHEGIKKALEELRPLRRRIFDALYKYKLAWMNMGYKQREASPLADL 371
             T+L  VP                                   + +         L   
Sbjct: 457 GITVLLLVP---------------------------------LLLRL---------LLLA 474

Query: 372 LAFRKVKARLGGRLRLVISGGAPLSTEVEEFLRVTCC--AFLVQGYGLTETCGPTTVCFP 429
                + +    RLR ++SGG  L   + + L         L+  YG TE     T+  P
Sbjct: 475 ALAPDLISPCE-RLRQLLSGGEALPLALVQRLLQLAALARRLLNLYGPTEA----TLDAP 529

Query: 430 DEMCMVGTAGPVSVYSELRLEEVPEM--GYSPLDDPPCGEVCVRGKTLFSGYYKNPDLTR 487
                      V +   +   ++  +  G  PL     GE+ + G  L  GY   PDLT 
Sbjct: 530 SFPISAELESRVPIGRPVANTQLYILDQGLRPLPLGVPGELYIAGLGLALGYLNRPDLTA 589

Query: 488 ES-IIDGWFHTGDIGQILPNGVVKIIDRKKNLIKI 521
           E  I    + TGD+ + L +G ++ + RK + +KI
Sbjct: 590 ERFIALRLYRTGDLARPLADGALEYLGRKDSQVKI 624

Length = 642

>gnl|CDD|181546 PRK08751, PRK08751, putative long-chain fatty acyl CoA ligase; Provisional

 Score = 87.2 bits (216), Expect = 6e-18
 Identities = 98/370 (26%), Positives = 153/370 (41%), Gaps = 63/370 (17%)

Query: 202 EFLHLGKVNEMEILPPQPFNICTIMYTSGTSGDPKGVVLTHETIATFVSGVDLFLDQFED 261
           E L LG+ + M  L  +P +I  + YT GT+G  KG +LTH  +   +     +L     
Sbjct: 190 EALALGRKHSMPTLQIEPDDIAFLQYTGGTTGVAKGAMLTHRNLVANMQQAHQWLAGTGK 249

Query: 262 KMTVDDVYLSFLPLAHILDRVIEEYFFRRGASVGYYHGDLNALRDDLMELKPTLLAGVPR 321
                +V ++ LPL HI         F +        G  N L  +            PR
Sbjct: 250 LEEGCEVVITALPLYHIFALTANGLVFMK-------IGGCNHLISN------------PR 290

Query: 322 VFEKIHEGIKKALEELRPLRRRIFDALYKYKLAWMNMGYKQREASPLADLLAFRKVKARL 381
                   +   ++EL+  R   F  +        N  +     +P  D + F  +K  L
Sbjct: 291 -------DMPGFVKELKKTRFTAFTGV--------NTLFNGLLNTPGFDQIDFSSLKMTL 335

Query: 382 GGRLRLVISGGAPLSTEVEEFLRVTCCAFLVQGYGLTETCGPTTVCFPDEMCMVGTAGPV 441
           GG       G A   +  E + +VT    LV+ YGLTET  P     P  + +    G +
Sbjct: 336 GG-------GMAVQRSVAERWKQVTGLT-LVEAYGLTET-SPAACINP--LTLKEYNGSI 384

Query: 442 SVYSELRLEEVPEMGYSPLDDP-------PCGEVCVRGKTLFSGYYKNPDLTRESI-IDG 493
            +        +P       DD          GE+C++G  +  GY+K P+ T + +  DG
Sbjct: 385 GL-------PIPSTDACIKDDAGTVLAIGEIGELCIKGPQVMKGYWKRPEETAKVMDADG 437

Query: 494 WFHTGDIGQILPNGVVKIIDRKKNLIKISQGEYVALEYLENVYCVAPIIEDIWVYG--DS 551
           W HTGDI ++   G V I+DRKK++I +S G  V    +E+V  + P + ++   G  D 
Sbjct: 438 WLHTGDIARMDEQGFVYIVDRKKDMILVS-GFNVYPNEIEDVIAMMPGVLEVAAVGVPDE 496

Query: 552 LKSMLVAVVV 561
               +V VV+
Sbjct: 497 KSGEIVKVVI 506

Length = 560

>gnl|CDD|235146 PRK03640, PRK03640, O-succinylbenzoic acid--CoA ligase; Provisional

 Score = 86.9 bits (216), Expect = 6e-18
 Identities = 48/145 (33%), Positives = 71/145 (48%), Gaps = 16/145 (11%)

Query: 411 LVQGYGLTETCGP-TTVCFPDEMCMVGTAGPVSVYSELRLEEVPEMGYSPLDDPPC---- 465
           + Q YG+TET     T+   D +  +G+AG      EL++E+         D        
Sbjct: 281 VYQSYGMTETASQIVTLSPEDALTKLGSAGKPLFPCELKIEK---------DGVVVPPFE 331

Query: 466 -GEVCVRGKTLFSGYYKNPDLTRESIIDGWFHTGDIGQILPNGVVKIIDRKKNLIKISQG 524
            GE+ V+G  +  GY    D TRE+  DGWF TGDIG +   G + ++DR+ +LI IS G
Sbjct: 332 EGEIVVKGPNVTKGYLNREDATRETFQDGWFKTGDIGYLDEEGFLYVLDRRSDLI-ISGG 390

Query: 525 EYVALEYLENVYCVAPIIEDIWVYG 549
           E +    +E V    P + +  V G
Sbjct: 391 ENIYPAEIEEVLLSHPGVAEAGVVG 415

Length = 483

>gnl|CDD|213286 cd05919, BCL_like, Benzoate CoA ligase (BCL) and similar adenylate forming enzymes

 Score = 86.2 bits (214), Expect = 6e-18
 Identities = 91/357 (25%), Positives = 129/357 (36%), Gaps = 80/357 (22%)

Query: 222 ICTIMYTSGTSGDPKGVVLTHETIATFVSGVDLFLDQFEDK---MTVDDVYLS----FL- 273
           I   +YTSGT+G PKGV+  H    TF        + F  +   +   D   S    F  
Sbjct: 93  IAYWLYTSGTTGKPKGVMHRHRDPLTFA-------EAFARELLGLQPGDRIFSSSKLFFA 145

Query: 274 -PLAHILDRVIEEYF-FRRGASVGYYHG--DLNALRDDLMELKPTLLAGVPRVFEKIHEG 329
             L + L       F    GAS     G     A+ D L   +PT+L GVP ++      
Sbjct: 146 YGLGNSL------LFPLFSGASAVLLPGWPTPEAVLDLLARHRPTVLFGVPALY------ 193

Query: 330 IKKALEELRPLRRRIFDALYKYKLAWMNMGYKQREASPLADLLAFRKVKARLGGRLRLVI 389
                                                    LL      A L   +RL +
Sbjct: 194 ---------------------------------------RALLESGAGSAPLFRSVRLCV 214

Query: 390 SGGAPLSTEVEEFLRVTCCAFLVQGYGLTETCGPTTVCFPDEMCMVGTAG-PVSVYSELR 448
           S G  L   + E         ++ G G TE         P      GT G PV  Y E R
Sbjct: 215 SAGEALPAGLAERWAEATGIEILDGIGSTEVLHIFISNRPGAA-RPGTTGRPVPGY-EAR 272

Query: 449 LEEVPEMGYSPLDDPPCGEVCVRGKTLFSGYYKNPDLTRESIIDGWFHTGDIGQILPNGV 508
           L  V E G         G++ VRG +L  GY+  P+ T+ ++ DGW  TGD      +G 
Sbjct: 273 L--VDESGREVPAGTV-GDLWVRGPSLAPGYWNLPEKTQRTLRDGWLRTGDRFSRDADGW 329

Query: 509 VKIIDRKKNLIKISQGEYVALEYLENVYCVAPIIED---IWVYGDSLKSMLVAVVVP 562
            +   R  ++IK+S G++V+   +E      P + +   + V  +     L A VVP
Sbjct: 330 YRYQGRADDMIKVS-GQWVSPLEVEAALGEHPAVAEAAVVAVPDEDGLVRLKAFVVP 385

This family contains benzoate CoA ligase (BCL) and related ligases that catalyze the acylation of benzoate derivatives, 2-aminobenzoate and 4-hydroxybenzoate. Aromatic compounds represent the second most abundant class of organic carbon compounds after carbohydrates. Xenobiotic aromatic compounds are also a major class of man-made pollutants. Some bacteria use benzoate as the sole source of carbon and energy through benzoate degradation. Benzoate degradation starts with its activation to benzoyl-CoA by benzoate CoA ligase. The reaction catalyzed by benzoate CoA ligase proceeds via a two-step process; the first ATP-dependent step forms an acyl-AMP intermediate, and the second step forms the acyl-CoA ester with release of the AMP. Length = 436

>gnl|CDD|213287 cd05920, 23DHB-AMP_lg, 2,3-dihydroxybenzoate-AMP ligase

 Score = 85.7 bits (213), Expect = 1e-17
 Identities = 49/164 (29%), Positives = 78/164 (47%), Gaps = 26/164 (15%)

Query: 384 RLRLVISGGAPLSTEVEEFLRVTCCAFLVQGYGLTETCGPTTVCF-----PDEMCMVGTA 438
            LR++  GGAPLS E+   +       L Q +G+ E  G   V +     P ++ M  T 
Sbjct: 256 SLRVIQVGGAPLSPELARRVEERLGCPLQQVFGMAE--G--LVNYTRLDDPPDVIM-RTQ 310

Query: 439 G-PVSVYSELRL-----EEVPEMGYSPLDDPPCGEVCVRGKTLFSGYYKNPDLTRESII- 491
           G P+S   E+R+     E VP            GE+  RG     GYY+ P+    +   
Sbjct: 311 GRPISPADEIRIVDDQGEPVPPGEV--------GELLTRGPYTIRGYYRAPEHNARAFTD 362

Query: 492 DGWFHTGDIGQILPNGVVKIIDRKKNLIKISQGEYVALEYLENV 535
           DG++ TGD+ +I  +G  +++ R K+ I    GE ++ E +EN+
Sbjct: 363 DGFYRTGDLVRIDADGYYRVVGRIKDQI-NRGGEKISPEEIENL 405

2,3-dihydroxybenzoate-AMP ligase activates 2,3-dihydroxybenzoate (DHB) by ligation of AMP from ATP with the release of pyrophosphate. However, it can also catalyze the ATP-PPi exchange for 2,3-DHB analogs, such as salicyclic acid (o-hydrobenzoate), as well as 2,4-DHB and 2,5-DHB, but with less efficiency. Proteins in this family are the stand-alone adenylation components of non-ribosomal peptide synthases (NRPSs) involved in the biosynthesis of siderophores, which are low molecular weight iron-chelating compounds synthesized by many bacteria to aid in the acquisition of this vital trace elements. In Escherichia coli, the 2,3-dihydroxybenzoate-AMP ligase is called EntE, the adenylation component of the enterobactin NRPS system. Length = 483

>gnl|CDD|211788 TIGR03098, ligase_PEP_1, acyl-CoA ligase (AMP-forming), exosortase A-associated

 Score = 86.0 bits (213), Expect = 1e-17
 Identities = 128/515 (24%), Positives = 193/515 (37%), Gaps = 104/515 (20%)

Query: 78  TYKEVYEEVLQIVSALRASGAEPGCRVGIYGANCPQWVEAMEACNALSLICVPLYDTLGP 137
           TY  + E VL + S LR  G   G RV IY     + V AM        + VP+   L  
Sbjct: 27  TYAALSERVLALASGLRGLGLARGERVAIYLDKRLETVTAMFGAALAGGVFVPINPLLKA 86

Query: 138 GAVNFILDHAEIDFVFVQDKKVKELLSPDCRSAQRLRVMVCFTSLTAEQKEMAVQTGIKP 197
             V  IL    +  + V   +  +LL P       LR ++         +      G +P
Sbjct: 87  EQVAHILADCNVR-LLVTSSERLDLLHPALPGCHDLRTLIIVGDPAHASEGHP---GEEP 142

Query: 198 YSWDEFLHLGKVNEMEILPPQPF---NICTIMYTSGTSGDPKGVVLTHETIATFVSGVDL 254
            SW + L LG        PP P    ++  I+YTSG++G PKGVVL+H  +      V  
Sbjct: 143 ASWPKLLALGDA-----DPPHPVIDSDMAAILYTSGSTGRPKGVVLSHRNLVAGAQSVAT 197

Query: 255 FLDQFEDKMTVDDVYLSFLPLAHILDRVIEEYFFRRGASVGYYHGDLNALRDDLMELKPT 314
           +L+        DD  L+ LPL+        +Y F +  +  +Y G    L D L+     
Sbjct: 198 YLE-----NRPDDRLLAVLPLSF-------DYGFNQ-LTTAFYVGATVVLHDYLL----- 239

Query: 315 LLAGVPR-VFEKI-HEGIKKALEELRPLRRRIFDALYKYKLAWMNMGYKQREASPLADLL 372
                PR V + +   GI   L  + PL  ++       +L W           P +   
Sbjct: 240 -----PRDVLKALEKHGI-TGLAAVPPLWAQLA------QLDW-----------PESAAP 276

Query: 373 AFRKVKARLGGRL-RLVISGGAPLSTEVEEFLRVTCCAFLVQGYGLTETCGPTTVCFPDE 431
           + R +    GG + R  +S           FL           YGLTE    T +  P+E
Sbjct: 277 SLRYL-TNSGGAMPRATLSRLRSFLPNARLFLM----------YGLTEAFRSTYLP-PEE 324

Query: 432 M----CMVGTAGP---VSVYSELRLEEVPEMGYSPLDDPPCGEVCVRGKTLFSGYYKNPD 484
           +      +G A P   V V  E   E  P            GE+  RG  +  GY+ +P+
Sbjct: 325 VDRRPDSIGKAIPNAEVLVLREDGSECAPG---------EEGELVHRGALVAMGYWNDPE 375

Query: 485 LTRESI--------------IDGWFHTGDIGQILPNGVVKIIDRKKNLIKISQGEYVALE 530
            T E                +  W  +GD  +    G +  + R+  +IK S G  V+  
Sbjct: 376 KTAERFRPLPPFPGELHLPELAVW--SGDTVRRDEEGFLYFVGRRDEMIKTS-GYRVSPT 432

Query: 531 YLENVYCVAPIIEDIWVYG---DSLKSMLVAVVVP 562
            +E V     ++ +   +G    +L   +V VV P
Sbjct: 433 EVEEVAYATGLVAEAVAFGVPDPTLGQAIVLVVTP 467

This group of proteins contains an AMP-binding domain (pfam00501) associated with acyl CoA-ligases. These proteins are generally found in genomes containing the exosortase/PEP-CTERM protein expoert system , specifically the type 1 variant of this system described by the Genome Property GenProp0652. When found in this context they are invariably present next to a decarboxylase enzyme. A number of sequences from Burkholderia species also hit this model, but the genomic context is obviously different. The hypothesis of a constant substrate for this family is only strong where the exosortase context is present. Length = 517

>gnl|CDD|178097 PLN02479, PLN02479, acetate-CoA ligase

 Score = 85.7 bits (212), Expect = 2e-17
 Identities = 58/168 (34%), Positives = 81/168 (48%), Gaps = 22/168 (13%)

Query: 390 SGGAP----LSTEVEEFLRVTCCAFLVQGYGLTETCGPTTVCF---------PDEMCMVG 436
           +G AP    L    E+  RVT        YGL+ET GP+TVC          P+E   + 
Sbjct: 318 AGAAPPPSVLFAMSEKGFRVT------HTYGLSETYGPSTVCAWKPEWDSLPPEEQARLN 371

Query: 437 TAGPVSVYSELRLEEV--PEMGYSPLDDPPCGEVCVRGKTLFSGYYKNPDLTRESIIDGW 494
               V       L+ V    M   P D    GE+ +RG  +  GY KNP    E+  +GW
Sbjct: 372 ARQGVRYIGLEGLDVVDTKTMKPVPADGKTMGEIVMRGNMVMKGYLKNPKANEEAFANGW 431

Query: 495 FHTGDIGQILPNGVVKIIDRKKNLIKISQGEYVALEYLENVYCVAPII 542
           FH+GD+G   P+G ++I DR K++I IS GE ++   +ENV    P +
Sbjct: 432 FHSGDLGVKHPDGYIEIKDRSKDII-ISGGENISSLEVENVVYTHPAV 478

Length = 567

>gnl|CDD|102207 PRK06145, PRK06145, acyl-CoA synthetase; Validated

 Score = 85.3 bits (211), Expect = 2e-17
 Identities = 60/184 (32%), Positives = 93/184 (50%), Gaps = 9/184 (4%)

Query: 383 GRLRLVISGGAPL-STEVEEFLRVTCCAFLVQGYGLTETC-GPTTVCFPDEMCMVGTAGP 440
             L   I GG     + + +F RV   A  +  YGLTETC G T +    E+  +G+ G 
Sbjct: 264 DSLAWCIGGGEKTPESRIRDFTRVFTRARYIDAYGLTETCSGDTLMEAGREIEKIGSTGR 323

Query: 441 VSVYSELRLEEVPEMGYSPLDDPPCGEVCVRGKTLFSGYYKNPDLTRESIIDGWFHTGDI 500
              + E+R+ +     + P +    GE+C+RG  +  GY+K+P+ T E+    WF +GD+
Sbjct: 324 ALAHVEIRIAD-GAGRWLPPNMK--GEICMRGPKVTKGYWKDPEKTAEAFYGDWFRSGDV 380

Query: 501 GQILPNGVVKIIDRKKNLIKISQGEYVALEYLENVYCVAPIIEDIWVYG---DSLKSMLV 557
           G +   G + + DRKK++I IS GE +A   +E V    P + +  V G   D     + 
Sbjct: 381 GYLDEEGFLYLTDRKKDMI-ISGGENIASSEVERVIYELPEVAEAAVIGVHDDRWGERIT 439

Query: 558 AVVV 561
           AVVV
Sbjct: 440 AVVV 443

Length = 497

>gnl|CDD|213277 cd05909, AAS_C, C-terminal domain of the acyl-acyl carrier protein synthetase (also called 2-acylglycerophosphoethanolamine acyltransferase, Aas)

 Score = 85.0 bits (211), Expect = 2e-17
 Identities = 57/184 (30%), Positives = 82/184 (44%), Gaps = 16/184 (8%)

Query: 384 RLRLVISGGAPLSTEVEEFLRVTCCAFLVQGYGLTETCGPTTVCFPDEMCMVGTAGPVSV 443
            LRLV++G   L     E         +++GYG TE     +V  P      GT G    
Sbjct: 260 SLRLVVAGAEKLPEATRELFEEKFGIRILEGYGATECSPVISVNTPMGNK-PGTVGRPLP 318

Query: 444 YSELRLEEVPEMGYSPLDDPPCGEVCVRGKTLFSGYYKNPDLTRESII--DGWFHTGDIG 501
             E+R+       +  L     G + VRG  + SGY  N + T E  +  DGW+ TGDIG
Sbjct: 319 GIEVRIVSPE--THEELPIGEGGLLLVRGPNVMSGYLNNEEKTSEVEVLGDGWYDTGDIG 376

Query: 502 QILPNGVVKIIDRKKNLIKISQGEYVALEYLENVYCVAPIIEDIWVYGDSLKSMLVAVVV 561
           +I  +G + I+ R K   KI  GE V+L  +E       ++ +I        S+  AV V
Sbjct: 377 KIDEDGFLTIVGRLKRFAKIG-GEMVSLTAVEE------LLSEIL----PEDSLHAAVEV 425

Query: 562 PCEE 565
           P E+
Sbjct: 426 PDEK 429

Acyl-acyl carrier protein synthase (Aas) is a membrane protein responsible for a minor pathway of incorporating exogenous fatty acids into membrane phospholipids. Its in vitro activity is characterized by the ligation of free fatty acids between 8 and 18 carbons in length to the acyl carrier protein sulfydryl group (ACP-SH) in the presence of ATP and Mg2+. However, its in vivo function is as a 2-acylglycerophosphoethanolamine (2-acyl-GPE) acyltransferase. The reaction occurs in two steps: the acyl chain is first esterified to acyl carrier protein (ACP) via a thioester bond, followed by a second step where the acyl chain is transferred to a 2-acyllysophospholipid, thus completing the transacylation reaction. This model represents the C-terminal domain of the enzyme, which belongs to the class I adenylate-forming enzyme family, including acyl-CoA synthetases. Length = 489

>gnl|CDD|236359 PRK08974, PRK08974, long-chain-fatty-acid--CoA ligase; Validated

 Score = 85.5 bits (212), Expect = 2e-17
 Identities = 52/143 (36%), Positives = 81/143 (56%), Gaps = 11/143 (7%)

Query: 384 RLRLVISGGAPLSTEV-EEFLRVTCCAFLVQGYGLTETCGPTTVCFP-DEMCMVGTAG-P 440
            L+L + GG  +   V E ++++T   +L++GYGLTE C P     P D     G+ G P
Sbjct: 326 SLKLSVGGGMAVQQAVAERWVKLTGQ-YLLEGYGLTE-CSPLVSVNPYDLDYYSGSIGLP 383

Query: 441 V-SVYSELRLEEVPEMGYSPLDDPPCGEVCVRGKTLFSGYYKNPDLTRESIIDGWFHTGD 499
           V S   +L  ++  E+   P  +P  GE+ V+G  +  GY++ P+ T E I DGW  TGD
Sbjct: 384 VPSTEIKLVDDDGNEV---PPGEP--GELWVKGPQVMLGYWQRPEATDEVIKDGWLATGD 438

Query: 500 IGQILPNGVVKIIDRKKNLIKIS 522
           I  +   G ++I+DRKK++I +S
Sbjct: 439 IAVMDEEGFLRIVDRKKDMILVS 461

Length = 560

>gnl|CDD|213289 cd05922, FACL_like_6, Uncharacterized subfamily of fatty acid CoA ligase (FACL)

 Score = 83.4 bits (207), Expect = 2e-17
 Identities = 89/379 (23%), Positives = 149/379 (39%), Gaps = 106/379 (27%)

Query: 221 NICTIMYTSGTSGDPKGVVLTHETIATFVSGVDLFLDQFEDKMTVDDVYLSFLPLAHILD 280
           ++  I+YTSG++G+PKGV+L+H  +      +  +L+     +T DD  L+ LP +    
Sbjct: 3   DLAAIIYTSGSTGEPKGVMLSHRNLTAGARSIAQYLE-----LTEDDRILAVLPFSF--- 54

Query: 281 RVIEEY-------FFRRGASV------GYYHGDLNALRDDLMELKPTLLAGVPRVFEKIH 327
               +Y        FR G ++       +    L  L  +    + T  AGVP  + +  
Sbjct: 55  ----DYGLSQLLTAFRVGGTLVLESRFAFPRDVLKHLAKE----RITGFAGVPTTWAQ-- 104

Query: 328 EGIKKALEELRPLRRRIFDALYKYKLAWMNMGYKQREASPLADLLAFRKVKARLGGRLRL 387
                 L  L PL R  F +L                                     R 
Sbjct: 105 ------LLRLDPLAREDFPSL-------------------------------------RY 121

Query: 388 VISGGAPLSTE-VEEFLRVTCCAFLVQGYGLTETCGPTTVCFPDE----MCMVGTAGPVS 442
           + + G  L  + + +  R    A L   YGLTE    +T   P+E       +G A P  
Sbjct: 122 LTNAGGALPAKTILQLRRAFPDAKLFSMYGLTE-AFRSTYLPPEELDRRPDSIGKAIP-- 178

Query: 443 VYSELRLEEVPEMGYSPLDDPPC-----GEVCVRGKTLFSGYYKNPDLTRESII------ 491
              EL + +         D   C     GE+  RG  +  GY+ +P+ T E +       
Sbjct: 179 -NVELWVVDE--------DGNRCAPGEVGELVHRGANVMKGYWNDPEATAERLRPGPLPG 229

Query: 492 DGWFHTGDIGQILPNGVVKIIDRKKNLIKISQGEYVALEYLENVYCVAPIIEDIWVYG-- 549
           +   +TGD+ ++   G +  + RK ++IK ++G  V+   +E V C  P++ +  V G  
Sbjct: 230 EIVLYTGDLVRMDEEGYLYFVGRKDDMIK-TRGYRVSPTEIEEVICAHPLVAEAAVIGVP 288

Query: 550 -DSLKSMLVAVVVPCEEDT 567
              L   +VAVVV  + ++
Sbjct: 289 DPLLGQAIVAVVVSADGES 307

Fatty acyl-CoA ligases catalyze the ATP-dependent activation of fatty acids in a two-step reaction. The carboxylate substrate first reacts with ATP to form an acyl-adenylate intermediate, which then reacts with CoA to produce an acyl-CoA ester. This is a required step before free fatty acids can participate in most catabolic and anabolic reactions. Length = 350

>gnl|CDD|181011 PRK07514, PRK07514, malonyl-CoA synthase; Validated

 Score = 84.9 bits (211), Expect = 3e-17
 Identities = 137/513 (26%), Positives = 191/513 (37%), Gaps = 159/513 (30%)

Query: 64  RPFVDGKFGPYVWKTYKEVYEEVLQIVSALRASGAEPGCRVGIYGANCPQWVEAMEACNA 123
            PF++   G     TY ++     ++ + L A G +PG RV +     P   EA+    A
Sbjct: 18  APFIETPDGLRY--TYGDLDAASARLANLLVALGVKPGDRVAVQVEKSP---EAL----A 68

Query: 124 LSLICV-------PLYDTLGPGAVNFILDHAEIDFVFVQDKKVKELLSPDCRSAQRLRVM 176
           L L  +       PL        +++ +  AE   + V D      LS     A      
Sbjct: 69  LYLATLRAGAVFLPLNTAYTLAELDYFIGDAEPA-LVVCDPANFAWLSK---IAAAAGAP 124

Query: 177 VCFT-------SLTAEQKEMAVQTGIKPYSWDEFLHLGKVNEMEILPPQPFNICTIMYTS 229
              T       SL                  D+F         E +P    ++  I+YTS
Sbjct: 125 HVETLDADGTGSLLEAAAAAP----------DDF---------ETVPRGADDLAAILYTS 165

Query: 230 GTSGDPKGVVLTHETIAT-FVSGVDLFLDQFEDKMTVDDVYLSFLPLAHILDRVIEEYFF 288
           GT+G  KG +L+H  + +  ++ VD +      + T DDV +  LP+ H           
Sbjct: 166 GTTGRSKGAMLSHGNLLSNALTLVDYW------RFTPDDVLIHALPIFHT---------- 209

Query: 289 RRGASVGYYHGDLNALRDDLMELKPTLLAGVPRVFEKIHEGIKKALEELRPLRRRIFDAL 348
                    HG   A           LLAG   +F                L +  FD  
Sbjct: 210 ---------HGLFVAT-------NVALLAGASMIF----------------LPK--FDP- 234

Query: 349 YKYKLAWMN-----MG----YKQREASPLADLLAFRKVKARLGGRLRLVISGGAPLSTEV 399
               LA M      MG    Y +    P        +  A     +RL ISG APL  E 
Sbjct: 235 -DAVLALMPRATVMMGVPTFYTRLLQEP-----RLTREAAA---HMRLFISGSAPLLAET 285

Query: 400 -EEFLRVTCCAFLVQGYGLTETCGPT-----------TVCFPDEMCMVGTAGPVSVYSEL 447
             EF   T  A L + YG+TET   T           TV FP    + G          L
Sbjct: 286 HREFQERTGHAIL-ERYGMTETNMNTSNPYDGERRAGTVGFP----LPGV--------SL 332

Query: 448 RLEEVPEMGYSPLDDPPCGEVC---VRGKTLFSGYYKNPDLTRESI-IDGWFHTGDIGQI 503
           R+ + PE G + L   P GE+    V+G  +F GY++ P+ T E    DG+F TGD+G+I
Sbjct: 333 RVTD-PETG-AEL---PPGEIGMIEVKGPNVFKGYWRMPEKTAEEFRADGFFITGDLGKI 387

Query: 504 LPNGVVKIIDRKKNLIKISQGEYVALEYLENVY 536
              G V I+ R K+LI IS G Y       NVY
Sbjct: 388 DERGYVHIVGRGKDLI-ISGG-Y-------NVY 411

Length = 504

>gnl|CDD|140318 PTZ00297, PTZ00297, pantothenate kinase; Provisional

 Score = 84.5 bits (209), Expect = 1e-16
 Identities = 128/638 (20%), Positives = 236/638 (36%), Gaps = 80/638 (12%)

Query: 42   NTAWDIFSMSVQKYPGNRMLGWRPFVDGKFGPYVWKTYKEVYEEVLQIVSALRASGAEPG 101
             +  +++  SV ++   R LG       + G   W TY  V     ++ S L A G  PG
Sbjct: 427  RSLGEMWERSVTRHSTFRCLG----QTSESGESEWLTYGTVDARARELGSGLLALGVRPG 482

Query: 102  CRVGIYGANCPQWVEAMEACNALSLICVPLYDTLGPG-AVNFILDHAEIDFVFVQDKKVK 160
              +G+        V    AC       +PL   +G G  +  ++D  +I  VF     V 
Sbjct: 483  DVIGVDCEASRNIVILEVACALYGFTTLPL---VGKGSTMRTLIDEHKIKVVFADRNSVA 539

Query: 161  ELLSPDCRSAQRLRVMVCFTSLTAEQKEMAVQ-TGIKPYSWDEFLHLGKVNEMEILPPQP 219
             +L+  CRS ++L  +V   S   E      +   I    ++     G+   +  +P + 
Sbjct: 540  AILT--CRS-RKLETVVYTHSFYDEDDHAVARDLNITLIPYEFVEQKGR---LCPVPLKE 593

Query: 220  FNICTIMYT-------SGTSGDPKGVVLTHETIATFVS---GVDLFLDQFEDKMTVDDVY 269
                  ++T       S +      V +TH  +   +S      +    F+  + V    
Sbjct: 594  HVTTDTVFTYVVDNTTSASGDGLAVVRVTHADVLRDISTLVMTGVLPSSFKKHLMV---- 649

Query: 270  LSFLPLAHILDRVIEEYFFRRGASVGYYHGDLNALRDDLMELKPTLLAGVPRVFEKIHEG 329
              F P A + +RV     F  G++V     D   L+   ++ +PT+L   P +F      
Sbjct: 650  -HFTPFAMLFNRVFVLGLFAHGSAVATV--DAAHLQRAFVKFQPTILVAAPSLFSTSRLQ 706

Query: 330  IKKALEELRPLRRRIFDALYKYKLAWMNMGYKQREASPLADLLAFRKVKARLGGRLRLVI 389
            + +A E    +   +F+  ++ +   +N+    R  S L   + FR  +  LGG +  ++
Sbjct: 707  LSRANERYSAVYSWLFERAFQLRSRLINI---HRRDSSLLRFIFFRATQELLGGCVEKIV 763

Query: 390  --SGGAPLSTEVEEFLRVTCCAFLVQGYGLTETCGPTTVCFPDEMCMVGTAGPVSVYSEL 447
                    S  + E + V C    ++      + G   V      C+ GT  P S+  +L
Sbjct: 764  LCVSEESTSFSLLEHISV-CYVPCLREVFFLPSEG---VF-----CVDGTPAP-SLQVDL 813

Query: 448  RLEEVPEMGYSPLDDPPCGEVCVRGKTLFSGYYKNPDLTRESIIDGWFHTGDIGQILPNG 507
                       P D+P  G     G+ + +   K        I   W    D        
Sbjct: 814  E----------PFDEPSDGAGI--GQLVLA--KKGEPRRTLPIAAQW--KRD-------R 850

Query: 508  VVKIIDRKKNLIKISQGEYVALEYLENVYCVAPIIEDIWVYGDSLKSMLVAVVVPCEEDT 567
             ++++     ++     EYV    LE ++  +  + DI++Y D  +  ++A+V P   DT
Sbjct: 851  TLRLLGPPLGILLPVAYEYVIAAELERIFSQSRYVNDIFLYADPSRP-IIAIVSP-NRDT 908

Query: 568  K--KW--AYSNGHAGSFLELCSLVQLQNY----ILSELKNAAERNKLRGFEHIKGVILDP 619
               +W  ++  G  G         +L  Y    + ++    A+ N L      + V L P
Sbjct: 909  VEFEWRQSHCMGEGGGPARQLGWTELVAYASSLLTADFACIAKENGLHPSNVPEYVHLHP 968

Query: 620  RPFDMERDLVTATLKKKRNKLLIYYQVEIDQLYEKLAP 657
              F      +T   K +R+ +  Y+   I++ Y  +  
Sbjct: 969  HAFKDHSTFLTPYGKIRRDAVHSYFSSVIERFYSDVET 1006

Length = 1452

>gnl|CDD|213276 cd05908, A_NRPS_MycA_like, The adenylation domain of nonribosomal peptide synthetases (NRPS) similar to mycosubtilin synthase subunit A (MycA)

 Score = 82.7 bits (205), Expect = 1e-16
 Identities = 88/345 (25%), Positives = 137/345 (39%), Gaps = 111/345 (32%)

Query: 225 IMYTSGTSGDPKGVVLTHETIATFVSGVDLFLDQFEDKMTVDDVYLSFLPLAHILDRVIE 284
           I ++SG++G+PKGV+LTH+ + T +  +         ++T +DV+LS++PL H       
Sbjct: 111 IQFSSGSTGEPKGVILTHKNLLTNIEAIIEAA-----EITSEDVFLSWMPLTH------- 158

Query: 285 EYFFRRGASVGYYHGDLNALRDDLME-LKPTLLAGVPRVFEKIHEGIKKALEELRPLRRR 343
                    +G     L      + + L PT      R+F +            RPL   
Sbjct: 159 --------DMGLIGFHLTPTALGINQYLMPT------RLFIR------------RPL--L 190

Query: 344 IFDALYKYKLAWM---NMGYKQ------REASPLADLLAFRKVKARLGGRLRLVISGGAP 394
             D   +++   +   N GYK        E     DL + R           L+ +G  P
Sbjct: 191 WLDKASQHRATILSSPNFGYKYLLKHFKTEKIIDWDLSSVR-----------LIFNGAEP 239

Query: 395 LSTEV-EEF--------LRVTCCAFLVQGYGLTETCGPTTVCFP---------------- 429
           +S ++ EEF        LR      +   YGL E      V FP                
Sbjct: 240 ISADLCEEFLEKMAPFGLRPNA---MYPVYGLAEAT--LAVSFPKPGEPFKTVCLDRNHL 294

Query: 430 --------------DEMCMVGTAGPVSVYSELRLEEVPEMGYSPLDDPPCGEVCVRGKTL 475
                         D +  V    P+    E+R+  V + G   L D   G + ++G  +
Sbjct: 295 KVGVKIIEIDPKNSDAISFVEVGSPID-GCEIRI--VDDAGEV-LPDRTIGHIQIKGDNV 350

Query: 476 FSGYYKNPDLTRESII-DGWFHTGDIGQILPNGVVKIIDRKKNLI 519
            SGYY NP+ T++SI  DGW  TGD+G +  NG + I  R K++I
Sbjct: 351 TSGYYNNPEATKKSITPDGWLKTGDLGFLR-NGRLVITGRAKDII 394

The adenylation (A) domain of NRPS recognizes a specific amino acid or hydroxy acid and activates it as (amino)-acyl adenylate by hydrolysis of ATP. The activated acyl moiety then forms thioester to the enzyme-bound cofactor phosphopantetheine of a peptidyl carrier protein domain. This family includes NRPS similar to mycosubtilin synthase subunit A (MycA). Mycosubtilin, which is characterized by a beta-amino fatty acid moiety linked to the circular heptapeptide Asn-Tyr-Asn-Gln-Pro-Ser-Asn, belongs to the iturin family of lipopeptide antibiotics. The mycosubtilin synthase subunit A (MycA) combines functional domains derived from peptide synthetases, amino transferases, and fatty acid synthases. Nonribosomal peptide synthetases are large multifunction enzymes that synthesize many therapeutically useful peptides. NRPS has a distinct modular structure in which each module is responsible for the recognition, activation, and, in some cases, modification of a single amino acid residue of the final peptide product. The modules can be subdivided into domains that catalyze specific biochemical reactions. Length = 499

>gnl|CDD|235673 PRK06018, PRK06018, putative acyl-CoA synthetase; Provisional

 Score = 82.9 bits (205), Expect = 1e-16
 Identities = 126/529 (23%), Positives = 188/529 (35%), Gaps = 177/529 (33%)

Query: 72  GPYVWKTYKEVYEEVLQIVSALRASGAEPGCRVGIYGANCPQWVEAMEACNALSLICVPL 131
           GP V  TY ++++  L++  AL   G + G RV     N  + +EA      +  IC  +
Sbjct: 35  GPIVRTTYAQIHDRALKVSQALDRDGIKLGDRVATIAWNTWRHLEAWYGIMGIGAICHTV 94

Query: 132 YDTLGPGAVNFILDHAE-----IDFVFVQDKKVKELLSPDCRSAQRLRVM---------- 176
              L P  + +I++HAE      D  FV    + E ++    S +R  V+          
Sbjct: 95  NPRLFPEQIAWIINHAEDRVVITDLTFV---PILEKIADKLPSVERYVVLTDAAHMPQTT 151

Query: 177 ----VCFTSLTAEQKEMAVQTGIKPYSWDEFLHLGKVNEMEILPPQPFNICTIMYTSGTS 232
               V +    AE            ++W  F                     + YTSGT+
Sbjct: 152 LKNAVAYEEWIAEAD--------GDFAWKTF--------------DENTAAGMCYTSGTT 189

Query: 233 GDPKGVVLTHET---IATFVSGVDLFLDQFEDKMTVDDVYLSFLPLAHI----------- 278
           GDPKGV+ +H +    A   +  D          +  D  L  +PL H            
Sbjct: 190 GDPKGVLYSHRSNVLHALMANNGDAL------GTSAADTMLPVVPLFHANSWGIAFSAPS 243

Query: 279 -----------LDRVIEEYFFRRGASVGYYHGDLNALRDDLMEL----KPTLLAGVPRVF 323
                      LD          GASV               EL    K T  AGVP V+
Sbjct: 244 MGTKLVMPGAKLD----------GASV--------------YELLDTEKVTFTAGVPTVW 279

Query: 324 EKIHEGIKKALEELRPLR----------RRIFDALYKYKL----AW-MNMGYKQREASPL 368
             + + ++K   +L  L+          R +  A     +    AW M       E SPL
Sbjct: 280 LMLLQYMEKEGLKLPHLKMVVCGGSAMPRSMIKAFEDMGVEVRHAWGMT------EMSPL 333

Query: 369 ADLLAFRKVKARLGGRLRLVISGGAPLSTEVEEFLRVTCCAFLVQGYGLTETCGPTTVCF 428
             L A +   ++L G  RL +                       QGY       P  V  
Sbjct: 334 GTLAALKPPFSKLPGDARLDV--------------------LQKQGYP------PFGV-- 365

Query: 429 PDEMCMVGTAGPVSVYSELRLEEVPEMGYSPLDDPPCGEVCVRGKTLFSGYYKNPDLTRE 488
             EM +   AG          +E+P       D    G + VRG  + + YY+       
Sbjct: 366 --EMKITDDAG----------KELPW------DGKTFGRLKVRGPAVAAAYYRVDG---- 403

Query: 489 SIID--GWFHTGDIGQILPNGVVKIIDRKKNLIKISQGEYVALEYLENV 535
            I+D  G+F TGD+  I   G ++I DR K++IK S GE+++   LEN+
Sbjct: 404 EILDDDGFFDTGDVATIDAYGYMRITDRSKDVIK-SGGEWISSIDLENL 451

Length = 542

>gnl|CDD|215576 PLN03102, PLN03102, acyl-activating enzyme; Provisional

 Score = 82.4 bits (203), Expect = 2e-16
 Identities = 61/197 (30%), Positives = 91/197 (46%), Gaps = 44/197 (22%)

Query: 388 VISGGAP----LSTEVEEFLRVTCCAFLV-QGYGLTETCGPTTVC--------FPDEMCM 434
           V++GG+P    L  +V+         F V   YGLTE  GP   C         P+   M
Sbjct: 305 VLTGGSPPPAALVKKVQRL------GFQVMHAYGLTEATGPVLFCEWQDEWNRLPENQQM 358

Query: 435 ---------VGTAGPVSVYSELRLEEVPEMGYSPLDDPPCGEVCVRGKTLFSGYYKNPDL 485
                    +     V V ++   E VP       D    GE+ ++G ++  GY KNP  
Sbjct: 359 ELKARQGVSILGLADVDVKNKETQESVPR------DGKTMGEIVIKGSSIMKGYLKNPKA 412

Query: 486 TRESIIDGWFHTGDIGQILPNGVVKIIDRKKNLIKISQGEYVALEYLENVYCVAPIIEDI 545
           T E+   GW +TGD+G I P+G V+I DR K++I IS GE ++   +ENV         +
Sbjct: 413 TSEAFKHGWLNTGDVGVIHPDGHVEIKDRSKDII-ISGGENISSVEVENV---------L 462

Query: 546 WVYGDSLKSMLVAVVVP 562
           + Y   L++ +VA+  P
Sbjct: 463 YKYPKVLETAVVAMPHP 479

Length = 579

>gnl|CDD|236043 PRK07529, PRK07529, AMP-binding domain protein; Validated

 Score = 82.3 bits (204), Expect = 3e-16
 Identities = 83/312 (26%), Positives = 114/312 (36%), Gaps = 81/312 (25%)

Query: 228 TSGTSGDPKGVVLTH--ETIATFVSGVDLFLDQFEDKMTVDDVYLSFLPLAHILDR-VIE 284
           T GT+G PK    TH  E    ++  + L L          D     LPL H+    V  
Sbjct: 221 TGGTTGMPKLAQHTHGNEVANAWLGALLLGLGP-------GDTVFCGLPLFHVNALLVTG 273

Query: 285 EYFFRRGASV------GYYHGDLNALRDDLMEL----KPTLLAGVPRVFEKIHEGIKKAL 334
                RGA V      GY       +  +  ++    +   L+GVP V            
Sbjct: 274 LAPLARGAHVVLATPQGYRG---PGVIANFWKIVERYRINFLSGVPTV------------ 318

Query: 335 EELRPLRRRIFDALYKYKLAWMNMGYKQREASPLADLLAFRKVKARLGGRLRLVISGGAP 394
                                             A LL    V       LR  + G AP
Sbjct: 319 ---------------------------------YAALLQ-VPVDGHDISSLRYALCGAAP 344

Query: 395 LSTEV-EEFLRVTCCAFLVQGYGLTE-TCGPTTVCFPDEMCMVGTAGPVSVYSELRLEEV 452
           L  EV   F   T    +V+GYGLTE TC  ++V  PD    +G+ G    Y  +R+  +
Sbjct: 345 LPVEVFRRFEAATGVR-IVEGYGLTEATCV-SSVNPPDGERRIGSVGLRLPYQRVRVVIL 402

Query: 453 PEMGYSPLDDPP--CGEVCVRGKTLFSGYY---KNPDLTRESIIDGWFHTGDIGQILPNG 507
            + G    D      G +C+ G  +FSGY     N  L  E   DGW +TGD+G+I  +G
Sbjct: 403 DDAGRYLRDCAVDEVGVLCIAGPNVFSGYLEAAHNKGLWLE---DGWLNTGDLGRIDADG 459

Query: 508 VVKIIDRKKNLI 519
              +  R K+LI
Sbjct: 460 YFWLTGRAKDLI 471

Length = 632

>gnl|CDD|213297 cd05931, FAAL, Fatty acyl-AMP ligase (FAAL)

 Score = 81.9 bits (203), Expect = 3e-16
 Identities = 124/508 (24%), Positives = 177/508 (34%), Gaps = 150/508 (29%)

Query: 78  TYKEVYEEVLQIVSALRASGAEPGCRVGIYGANCPQWVEAMEACNALSLICVPLYDTLGP 137
           TY E+      I + L+A G  PG RV +       +V A   C     I VP       
Sbjct: 25  TYAELDRRARAIAARLQALG-APGDRVLLLAPPGLDFVAAFFGCLYAGAIAVPAPPPRRL 83

Query: 138 GA----VNFILDHAEIDFVFVQDKKVKELLSPDCRSAQRLRVMVCFTSLTAEQKEMAVQT 193
           G     +  IL  A    V      V   L     +   L +++      A     A+  
Sbjct: 84  GRHLARLAAILADAGARAVLT-TSAVLAALRAALAAPAALLLLLIAADDLA-----ALAA 137

Query: 194 GIKPYSWDEFLHLGKVNEMEILPPQPFNICTIMYTSGTSGDPKGVVLTHETIATFVSGVD 253
                 W               PP P +I  + YTSG++G PKGV++TH  +   ++ + 
Sbjct: 138 A----DW------------RPPPPDPDDIAFLQYTSGSTGAPKGVMVTHGNL---LANLR 178

Query: 254 LFLDQFEDKMTVDDVYLSFLPLAHILDRVIEEYFFRRGASVGYYHGDLNALRDDL----M 309
                F   +  DDV +S+LPL                     YH        D+     
Sbjct: 179 AIARAFG--LDPDDVGVSWLPL---------------------YH--------DMGLIGG 207

Query: 310 ELKPTLLAGVPRVFEKIHEGIKKALEELRP---LRR--RIFDALYKYKLAWM---NMGYK 361
            L+P L AG P V              + P   LRR  R  +A+ +Y+       N  Y 
Sbjct: 208 LLQP-LYAGFPVVL-------------MSPLAFLRRPLRWLEAISRYRATVSGAPNFAY- 252

Query: 362 QREASPLADLLAFRKVK-ARLGG----RLRLVISGGAPLSTE-VEEFLRVTCCAFLVQG- 414
                   DL   R+V+  +L G      R+  +G  P+  + +E F       F   G 
Sbjct: 253 --------DLCV-RRVRDEQLAGLDLSSWRVAFNGAEPVRADTLERFAE----RFAPAGF 299

Query: 415 --------YGLTETC----------GPTTVCFPDEMCMVGTAGP-----------VSVYS 445
                   YGL E            GP  +    +    G A             VS   
Sbjct: 300 RPEAFLPCYGLAEATLAVSGGPPGAGPVVLRVDRDALARGGAAVAAADGAAARELVSCGR 359

Query: 446 ELRLEEV----PEMGYSPLDDPPCGEVCVRGKTLFSGYYKNPDLTRESII-------DGW 494
            L   EV    PE    PL D   GE+ VRG ++ +GY+  P+ T E+          GW
Sbjct: 360 PLPGHEVRIVDPE-TRRPLPDGEVGEIWVRGPSVAAGYWNRPEATAETFGARLATDEGGW 418

Query: 495 FHTGDIGQILPNGVVKIIDRKKNLIKIS 522
             TGD+G  L +G + +  R K+LI I 
Sbjct: 419 LRTGDLG-FLHDGELYVTGRLKDLIIIR 445

FAAL belongs to the class I adenylate forming enzyme family and is homologous to fatty acyl-coenzyme A (CoA) ligases (FACLs). However, FAALs produce only the acyl adenylate and are unable to perform the thioester-forming reaction, while FACLs perform a two-step catalytic reaction; AMP ligation followed by CoA ligation using ATP and CoA as cofactors. FAALs have insertion motifs between the N-terminal and C-terminal subdomains that distinguish them from the FACLs. This insertion motif precludes the binding of CoA, thus preventing CoA ligation. It has been suggested that the acyl adenylates serve as substrates for multifunctional polyketide synthases to permit synthesis of complex lipids such as phthiocerol dimycocerosate, sulfolipids, mycolic acids, and mycobactin. Length = 547

>gnl|CDD|213285 cd05918, A_NRPS_SidN3_like, The adenylation (A) domain of siderophore-synthesizing nonribosomal peptide synthetases (NRPS)

 Score = 81.1 bits (201), Expect = 3e-16
 Identities = 76/325 (23%), Positives = 113/325 (34%), Gaps = 91/325 (28%)

Query: 218 QPFNICTIMYTSGTSGDPKGVVLTHETIATFVSGVDLFLDQFEDKMTVDDVYLSFLPLAH 277
            P +   ++YTSG++G PKGVV+TH  I  F+                 D  L F  +A 
Sbjct: 97  SPDDPAYVIYTSGSTGKPKGVVITHRNICNFL---RAEGAILGI--RPGDRVLQFASIA- 150

Query: 278 ILDRVIEEYFFRRGASVGYYHGDLNALRDDLMELKPTLLAG---VPRVFEKIHEGIKKAL 334
             D  I E F                          TLLAG   V    E   E + + L
Sbjct: 151 -FDVSILEIFT-------------------------TLLAGGTLVIPPEELRLEDLAEFL 184

Query: 335 EELRPLRRRIFDALYKYKLAWMNMGYKQREASP-LADLLAFRKVKARLGGRLRLVISGGA 393
             LR                  ++       +P L  LL    V       LR +I GG 
Sbjct: 185 NRLRV--------------TVAHL-------TPSLLALLDPEDVP-----SLRTLILGGE 218

Query: 394 PLSTEVEEFLRVTCCAFLVQGYGLTETC--GPTTVCFPDEMCMVGTAGPVSVYSELRLEE 451
                + +         L+  YG TE       +   P +   +G   P+  Y+   L  
Sbjct: 219 ACPQALVDRWSKPRR--LLNTYGPTEATVTATASRLTPGKPVNIG--RPLPNYTCWVL-- 272

Query: 452 VPEMGYSPLDDPPC-----GEVCVRGKTLFSGYYKNPDLTRESII------DGW----FH 496
                  P  +P       GE+C+ G  +  GY   P+LT E  I      +      + 
Sbjct: 273 ------DPDLEPLVPIGAVGELCIGGPGVARGYLNRPELTAEKFIPDPFWLNNPGGRIYR 326

Query: 497 TGDIGQILPNGVVKIIDRKKNLIKI 521
           TGD+ + L +G ++ + RK + +KI
Sbjct: 327 TGDLVRYLEDGSLEFLGRKDDQVKI 351

The adenylation (A) domain of NRPS recognizes a specific amino acid or hydroxy acid and activates it as an (amino) acyl adenylate by hydrolysis of ATP. The activated acyl moiety then forms a thioester to the enzyme-bound cofactor phosphopantetheine of a peptidyl carrier protein domain. This family of siderophore-synthesizing NRPS includes the third adenylation domain of SidN from the endophytic fungus Neotyphodium lolii, ferrichrome siderophore synthetase, HC-toxin synthetase, and enniatin synthase. NRPSs are large multifunctional enzymes which synthesize many therapeutically useful peptides. These natural products include antibiotics, immunosuppressants, plant and animal toxins, and enzyme inhibitors. NRPS has a distinct modular structure in which each module is responsible for the recognition, activation, and in some cases, modification of a single amino acid residue of the final peptide product. The modules can be subdivided into domains that catalyze specific biochemical reactions. Length = 447

>gnl|CDD|213319 cd05972, MACS_like, Medium-chain acyl-CoA synthetase (MACS or ACSM)

 Score = 80.5 bits (199), Expect = 5e-16
 Identities = 79/319 (24%), Positives = 116/319 (36%), Gaps = 83/319 (26%)

Query: 222 ICTIMYTSGTSGDPKGVVLTHETIATFVSGVDLFLDQFEDKM--TVDD------VYLSFL 273
              + +TSGT+G PK V+ TH      +     +LD   D +  T+ D       + S  
Sbjct: 83  PALLYFTSGTTGLPKMVLHTHSYPLGHLVTGAYWLDLRPDDLHWTIADPGWAKGAWSSLF 142

Query: 274 -PLAHILDRVIEEYFFRRGASVGYYHGD-LNALR--DDLMELKPTLLAGVPRVFEKIHEG 329
            P                GA+V  YHG   +A R  + L     T     P  +      
Sbjct: 143 APWLL-------------GAAVFVYHGRRFDAERTLELLERYGVTTFCAPPTAY------ 183

Query: 330 IKKALEELRPLRRRIFDALYKYKLAWMNMGYKQREASPLADLLAFRKVKARLGGRLRLVI 389
                   R L ++                          DL ++          LR V+
Sbjct: 184 --------RMLLQQ--------------------------DLSSYDF------SHLRHVV 203

Query: 390 SGGAPLSTEVEEFLRVTCCAFLVQGYGLTETCGPTTVCFPDEMCMVGTAG-PVSVYSELR 448
           S G PL+ EV ++ R      +  GYG TET G     FP      G+ G P   Y   R
Sbjct: 204 SAGEPLNPEVIDWWRAATGLPIRDGYGQTET-GLLVANFPGMEVKPGSMGRPAPGY---R 259

Query: 449 LEEVPEMG-YSPLDDPPCGEVCVRGKT----LFSGYYKNPDLTRESIIDGWFHTGDIGQI 503
           +  + + G   P  +   G++ VR K     LF GY K+P+ T  +I   W+ TGD    
Sbjct: 260 VAIIDDEGNELPPGEE--GDIAVRVKPRPPGLFRGYLKDPEKTEATIRGDWYLTGDRAIK 317

Query: 504 LPNGVVKIIDRKKNLIKIS 522
             +G    + R  ++IK S
Sbjct: 318 DEDGYFWFVGRADDVIKSS 336

MACS catalyzes the two-step activation of medium chain fatty acids (containing 4-12 carbons). The carboxylate substrate first reacts with ATP to form an acyl-adenylate intermediate, which then reacts with CoA to produce an acyl-CoA ester. The acyl-CoA is a key intermediate in many important biosynthetic and catabolic processes. Length = 430

>gnl|CDD|213296 cd05930, A_NRPS, The adenylation domain of nonribosomal peptide synthetases (NRPS)

 Score = 80.2 bits (199), Expect = 6e-16
 Identities = 77/330 (23%), Positives = 118/330 (35%), Gaps = 91/330 (27%)

Query: 218 QPFNICTIMYTSGTSGDPKGVVLTHETIATFVSGVDLFLDQFEDKMTVDDVYLSFLPLAH 277
            P ++  ++YTSG++G PKGV++ H  +   ++      +++   +T  D  L F   + 
Sbjct: 91  DPDDLAYVIYTSGSTGRPKGVMVEHRGLVNLLAW---LQERYG--LTAGDRVLQFASFSF 145

Query: 278 ILDRVIEEYF--FRRGASVGYY------HGDLNALRDDLMELKPTLLAGVPRVFEKIHEG 329
             D  + E F     GA++           D  AL + L E + T+L  VP +   +   
Sbjct: 146 --DASVWEIFPPLLSGATL--VLAPPEVLRDPEALAELLREHRITVLHLVPSLLRAL--- 198

Query: 330 IKKALEELRPLRRRIFDALYKYKLAWMNMGYKQREASPLADLLAFRKVKARLGGRLRLVI 389
               L+ L P                                             LRLVI
Sbjct: 199 ----LDALEPAALP----------------------------------------SLRLVI 214

Query: 390 SGGAPLSTE-VEEFLRVTCCAFLVQGYGLTETCGPTTVC------FPDEMCMVGTAGP-V 441
            GG  L  E V  +  +   A LV  YG TET    T               +G      
Sbjct: 215 VGGEALPAELVRRWRELFPGARLVNAYGPTETTVDVTYHEVDPDDLDGGSVPIGRPIANT 274

Query: 442 SVY--SELRLEEVPEMGYSPLDDPPCGEVCVRGKTLFSGYYKNPDLTRESIIDGWFH--- 496
            VY   E  L  VP            GE+ + G  +  GY   P+LT E  +   F    
Sbjct: 275 RVYVLDE-DLRPVPVGV--------PGELYIGGAGVARGYLNRPELTAERFVPDPFGGPG 325

Query: 497 -----TGDIGQILPNGVVKIIDRKKNLIKI 521
                TGD+ + LP+G ++ + R  + +KI
Sbjct: 326 ERLYRTGDLARWLPDGNLEFLGRADDQVKI 355

The adenylation (A) domain of NRPS recognizes a specific amino acid or hydroxy acid and activates it as an (amino) acyl adenylate by hydrolysis of ATP. The activated acyl moiety then forms a thioester bond to the enzyme-bound cofactor phosphopantetheine of a peptidyl carrier protein domain. NRPSs are large multifunctional enzymes which synthesize many therapeutically useful peptides in bacteria and fungi via a template-directed, nucleic acid independent nonribosomal mechanism. These natural products include antibiotics, immunosuppressants, plant and animal toxins, and enzyme inhibitors. NRPS has a distinct modular structure in which each module is responsible for the recognition, activation, and in some cases, modification of a single amino acid residue of the final peptide product. The modules can be subdivided into domains that catalyze specific biochemical reactions. Length = 445

>gnl|CDD|180988 PRK07470, PRK07470, acyl-CoA synthetase; Validated

 Score = 80.5 bits (199), Expect = 8e-16
 Identities = 54/166 (32%), Positives = 70/166 (42%), Gaps = 33/166 (19%)

Query: 385 LRLVISGGAPLSTEVEEFLRVTCCAFLVQGYGLTETCGPTTVCFP-------DEMCMVGT 437
           LR VI  GAP+    ++         LVQ +GL E  G  TV  P            +GT
Sbjct: 282 LRYVIYAGAPMYRADQKRALAKLGKVLVQYFGLGEVTGNITVLPPALHDAEDGPDARIGT 341

Query: 438 AGPVSVYSELRLEEVPEMGYSPLDD-----PP--CGEVCVRGKTLFSGYYKNPDLTRESI 490
            G           E   M     DD     PP   GE+CV G  +F+GYY NP+   ++ 
Sbjct: 342 CG----------FERTGMEVQIQDDEGRELPPGETGEICVIGPAVFAGYYNNPEANAKAF 391

Query: 491 IDGWFHTGDIGQILPNGVVKIIDRKKNLIKISQGEYVALEYLENVY 536
            DGWF TGD+G +   G + I  R  ++  IS G         NVY
Sbjct: 392 RDGWFRTGDLGHLDARGFLYITGRASDMY-ISGG--------SNVY 428

Length = 528

>gnl|CDD|215189 PLN02330, PLN02330, 4-coumarate--CoA ligase-like 1

 Score = 78.9 bits (194), Expect = 3e-15
 Identities = 64/171 (37%), Positives = 87/171 (50%), Gaps = 11/171 (6%)

Query: 384 RLRLVISGGAPLSTEVEEFLRVTCCAFLVQ-GYGLTE-TCGPTTVCFPDEMCMVGTAGPV 441
           +L+ +++  APL+ E+            VQ  YGLTE +C   T   P++    G A   
Sbjct: 304 KLQAIMTAAAPLAPELLTAFEAKFPGVQVQEAYGLTEHSCITLTHGDPEKG--HGIAKKN 361

Query: 442 SVYSELRLEEV----PEMGYSPLDDPPCGEVCVRGKTLFSGYYKNPDLTRESI-IDGWFH 496
           SV   L   EV    P+ G S   + P GE+CVR + +  GYY N + T  +I  DGW H
Sbjct: 362 SVGFILPNLEVKFIDPDTGRSLPKNTP-GELCVRSQCVMQGYYNNKEETDRTIDEDGWLH 420

Query: 497 TGDIGQILPNGVVKIIDRKKNLIKISQGEYVALEYLENVYCVAPIIEDIWV 547
           TGDIG I  +G + I+DR K LIK  +G  VA   LE +    P +ED  V
Sbjct: 421 TGDIGYIDDDGDIFIVDRIKELIKY-KGFQVAPAELEAILLTHPSVEDAAV 470

Length = 546

>gnl|CDD|181195 PRK08008, caiC, putative crotonobetaine/carnitine-CoA ligase; Validated

 Score = 78.2 bits (193), Expect = 4e-15
 Identities = 43/106 (40%), Positives = 60/106 (56%), Gaps = 8/106 (7%)

Query: 466 GEVCVRG---KTLFSGYYKNPDLTRESII-DGWFHTGDIGQILPNGVVKIIDRKKNLIKI 521
           GE+C++G   KT+F  YY +P  T + +  DGW HTGD G +   G    +DR+ N+IK 
Sbjct: 367 GEICIKGVPGKTIFKEYYLDPKATAKVLEADGWLHTGDTGYVDEEGFFYFVDRRCNMIKR 426

Query: 522 SQGEYVALEYLENVYCVAPIIEDIWVYG--DSLKSMLV-AVVVPCE 564
             GE V+   LEN+    P I+DI V G  DS++   + A VV  E
Sbjct: 427 G-GENVSCVELENIIATHPKIQDIVVVGIKDSIRDEAIKAFVVLNE 471

Length = 517

>gnl|CDD|180533 PRK06334, PRK06334, long chain fatty acid--[acyl-carrier-protein] ligase; Validated

 Score = 77.2 bits (190), Expect = 8e-15
 Identities = 99/354 (27%), Positives = 138/354 (38%), Gaps = 84/354 (23%)

Query: 197 PYSWDEFLHLGKVNEMEILPPQPFNICTIMYTSGTSGDPKGVVLTHETIATFVSGVDLFL 256
           P+ W   +    V++ +     P ++  I++TSGT   PKGV LTH   A  ++     L
Sbjct: 167 PFEW--LMRWFGVSDKD-----PEDVAVILFTSGTEKLPKGVPLTH---ANLLANQRACL 216

Query: 257 DQFEDKMTVDDVYLSFLPLAHILDRVIEEYFFRRGASVGYYHGDLNALRDDLMELKPTLL 316
             F  K   DDV +SFLP  H        Y F                      L P LL
Sbjct: 217 KFFSPKE--DDVMMSFLPPFH-------AYGFNSCT------------------LFP-LL 248

Query: 317 AGVPRVF-------EKIHEGIKKALEELRPLRRRIFDALYKYKLAWMNMGYKQREASPLA 369
           +GVP VF       +KI E I +A           FD +       +    KQ    P  
Sbjct: 249 SGVPVVFAYNPLYPKKIVEMIDEAKVTFLGSTPVFFDYI-------LKTAKKQESCLP-- 299

Query: 370 DLLAFRKVKARLGGRLRLVISGGAPLSTEV-EEFLRVTCCAFLVQGYGLTETCGP----T 424
                          LR V+ GG      + +E L+      L QGYG TE C P     
Sbjct: 300 --------------SLRFVVIGGDAFKDSLYQEALKTFPHIQLRQGYGTTE-CSPVITIN 344

Query: 425 TVCFPDEMCMVGTAGPVSVYSELRLEEVPEMGYSPLDDPPCGEVCVRGKTLFSGYYKNPD 484
           TV  P     VG   P+     + +  V E    P+     G V  RG +LFSGY    D
Sbjct: 345 TVNSPKHESCVGM--PIR---GMDVLIVSEETKVPVSSGETGLVLTRGTSLFSGYLGE-D 398

Query: 485 LTRESII---DGWFHTGDIGQILPNGVVKIIDRKKNLIKISQGEYVALEYLENV 535
             +  +    + W+ TGD+G +  +G + +  R    +KI   E V+LE LE++
Sbjct: 399 FGQGFVELGGETWYVTGDLGYVDRHGELFLKGRLSRFVKIG-AEMVSLEALESI 451

Length = 539

>gnl|CDD|132252 TIGR03208, cyc_hxne_CoA_lg, cyclohexanecarboxylate-CoA ligase

 Score = 77.3 bits (190), Expect = 8e-15
 Identities = 116/499 (23%), Positives = 186/499 (37%), Gaps = 79/499 (15%)

Query: 78  TYKEVYEEVLQIVSALRASGAEPGCRVGIYGANCPQWVEAMEACNALSLICVPLYDTLGP 137
           +Y+E+   V +I   L   G   G  V     N  ++     AC  +  +  PL      
Sbjct: 55  SYRELDCRVDRIAVGLARLGVGRGDVVSFQLPNRWEFTALYLACARIGAVLNPLMPIFRE 114

Query: 138 GAVNFILDHAEIDFVFVQDKKVKEL--------LSPDCRSAQRLRVMVCFTSLTAEQKEM 189
             ++F+L+HA+   VFV     +          L         LR +V       +  + 
Sbjct: 115 RELSFMLNHADSK-VFVVPSVFRGFDHAAMARELQSK---LPALRQVVVIDGDGDDSFDR 170

Query: 190 AVQTGIKPYSWDEFLHLGKVNEMEILPPQPFNICTIMYTSGTSGDPKGVVLTHETIATFV 249
            + T  +  + D    L          P P ++  ++YTSGT+G+PKGV+ T  T+    
Sbjct: 171 VLMTPERDDTPDAAAILAGPR------PSPDDVTQLIYTSGTTGEPKGVMHTANTL---F 221

Query: 250 SGVDLFLDQFEDKMTVDDVYLSFLPLAHILDRVIEEYFFRRGASVGYYHGDLNALRDDLM 309
           S +  + ++ E  +   DV L   P+AH                 G+ +G        LM
Sbjct: 222 SNIHPYAERLE--LGGGDVILMASPMAHQ---------------TGFMYG--------LM 256

Query: 310 ELKPTLLAGVPRVFEKIHEGIKKALEELRPLRRRIFDALYKYKLAWMNMGYKQREASPLA 369
              P +L     V + I    + A E +R                   + +       L 
Sbjct: 257 --MPLIL-NATAVLQDIWNPAR-AAELIRETG----------------VTFTMASTPFLT 296

Query: 370 DLLAFRKVKARLGGRLRLVISGGAPLSTEVEEFLRVTCCAFLVQGYGLTETCGPTTVCFP 429
           DL    K        L   +  GAP+   + E       A +V  +G+TE  G  TV  P
Sbjct: 297 DLCRAVKESGAPVPSLFTFLCAGAPIPGILVERAWELLGALIVSAWGMTE-NGAVTVTEP 355

Query: 430 D---EMCMVGTAGPVSVYSELRLEEVPEMGYSPLDDPPCGEVCVRGKTLFSGYYKNPDLT 486
           D   E        P+    E+++ +      S  +    G + VRG + F GY K P L 
Sbjct: 356 DDALEKASTTDGRPLPGV-EVKVIDANGAKLSQGE---TGRLLVRGCSNFGGYLKRPHLN 411

Query: 487 RESIIDGWFHTGDIGQILPNGVVKIIDRKKNLIKISQGEYVALEYLENVYCVAPIIEDIW 546
                +GWF TGD+      G ++I  R K++I I  GE + +  +EN+    P +  + 
Sbjct: 412 STDA-EGWFDTGDLAFQDAEGYIRINGRSKDVI-IRGGENIPVVEIENLLYQHPAVAQVA 469

Query: 547 VYG---DSLKSMLVAVVVP 562
           +     + L     AVVVP
Sbjct: 470 IVAYPDERLGERACAVVVP 488

Members of this protein family are cyclohexanecarboxylate-CoA ligase. This enzyme prepares the aliphatic ring compound, cyclohexanecarboxylate, for dehydrogenation and then degradation by a pathway also used in benzoyl-CoA degradation in Rhodopseudomonas palustris. Length = 538

>gnl|CDD|235625 PRK05852, PRK05852, acyl-CoA synthetase; Validated

 Score = 76.8 bits (189), Expect = 1e-14
 Identities = 60/187 (32%), Positives = 86/187 (45%), Gaps = 9/187 (4%)

Query: 385 LRLVISGGAPLSTEVEEFLRVTCCAFLVQGYGLTETCGPTTVC----FPDEMCMVGTAGP 440
           LR + S  APL+ E  + L+    A +V  +G+TE     T             V + G 
Sbjct: 297 LRFIRSCSAPLTAETAQALQTEFAAPVVCAFGMTEATHQVTTTQIEGIGQTENPVVSTGL 356

Query: 441 VSVYSELRLEEVPEMGYSPLDDPPCGEVCVRGKTLFSGYYKNPDLTRESIIDGWFHTGDI 500
           V   +  ++  V   G  PL     GEV +RG T+  GY  +P +T  +  DGW  TGD+
Sbjct: 357 VGRSTGAQIRIVGSDG-LPLPAGAVGEVWLRGTTVVRGYLGDPTITAANFTDGWLRTGDL 415

Query: 501 GQILPNGVVKIIDRKKNLIKISQGEYVALEYLENVYCVAPIIEDIWVYG--DSLKSMLV- 557
           G +   G + I  R K LI    GE ++ E +E V    P + +  V+G  D L    V 
Sbjct: 416 GSLSAAGDLSIRGRIKELINRG-GEKISPERVEGVLASHPNVMEAAVFGVPDQLYGEAVA 474

Query: 558 AVVVPCE 564
           AV+VP E
Sbjct: 475 AVIVPRE 481

Length = 534

>gnl|CDD|213288 cd05921, FCS, Feruloyl-CoA synthetase (FCS)

 Score = 75.7 bits (187), Expect = 2e-14
 Identities = 72/301 (23%), Positives = 115/301 (38%), Gaps = 94/301 (31%)

Query: 225 IMYTSGTSGDPKGVVLTHETIATFVSGVDLFLDQFEDKMTVDDVYLSFLPLAH------I 278
            ++TSG++G PK V+ TH  +    + +        ++     V + +LP  H       
Sbjct: 169 YLFTSGSTGLPKAVINTHRMLCANQAMIAQCWPFLTEE---PPVLVDWLPWNHTFGGNHN 225

Query: 279 LDRVIEE---YFFRRGASV-GYYHGDLNALRDDLMELKPTLLAGVPRVFEKIHEGIKKAL 334
            + V+      +   G  V G +   L  LR    E+ PT+   VP+ FE + +    AL
Sbjct: 226 FNMVLYNGGTLYIDDGKPVPGLFEETLRNLR----EVSPTVYFNVPKGFEMLVD----AL 277

Query: 335 EELRPLRRRIFDALYKYKLAWMNMGYKQREASPLADLLAFRKVKARLGGRLRLVISGGAP 394
           E    LRRR F                                      RLRL+   GA 
Sbjct: 278 ERDAALRRRFF-------------------------------------KRLRLLFYAGAA 300

Query: 395 LSTEVEEFL----------RVTCCAFLVQGYGLTETCGPTTVC-FPDEMCMVGTAGPVSV 443
           L  +V + L          R+   +    G G TET    T   +P +      +G + +
Sbjct: 301 LPQDVWDRLQALAVRTTGERIPMTS----GLGATETAPTATFVHWPTDR-----SGVIGL 351

Query: 444 YS---ELRLEEVPEMG-YSPLDDPPCGEVCVRGKTLFSGYYKNPDLTRESI-IDGWFHTG 498
            +   EL+L  VP  G           EV V+G  +  GY+++P+LT E+   +G++  G
Sbjct: 352 PAPGTELKL--VPNGGKL---------EVRVKGPNVTPGYWRDPELTAEAFDEEGFYRIG 400

Query: 499 D 499
           D
Sbjct: 401 D 401

Feruloyl-CoA synthetase is an essential enzyme in the feruloyl acid degradation pathway and enables some proteobacteria to grow on media containing feruloyl acid as the sole carbon source. It catalyzes the transfer of CoA to the carboxyl group of ferulic acid, which then forms feruloyl-CoA in the presence of ATP and Mg2. The resulting feruloyl-CoA is further degraded to vanillin and acetyl-CoA. Feruloyl-CoA synthetase (FCS) is a subfamily of the adenylate-forming enzymes superfamily. Length = 559

>gnl|CDD|235724 PRK06178, PRK06178, acyl-CoA synthetase; Validated

 Score = 75.8 bits (187), Expect = 3e-14
 Identities = 24/57 (42%), Positives = 38/57 (66%)

Query: 466 GEVCVRGKTLFSGYYKNPDLTRESIIDGWFHTGDIGQILPNGVVKIIDRKKNLIKIS 522
           GE+ VR  +L  GY+  P+ T E++ DGW HTGDIG+I   G +  + R+K ++K++
Sbjct: 415 GEIVVRTPSLLKGYWNKPEATAEALRDGWLHTGDIGKIDEQGFLHYLGRRKEMLKVN 471

Length = 567

>gnl|CDD|181381 PRK08316, PRK08316, acyl-CoA synthetase; Validated

 Score = 75.0 bits (185), Expect = 4e-14
 Identities = 43/123 (34%), Positives = 64/123 (52%), Gaps = 21/123 (17%)

Query: 415 YGLTETCGPT-TVCFPDE-MCMVGTAGPVSVYSELRL-----EEVP--EMGYSPLDDPPC 465
           YG TE   P  TV  P+E +   G+AG   +  E R+      +V   E+G         
Sbjct: 319 YGQTEI-APLATVLGPEEHLRRPGSAGRPVLNVETRVVDDDGNDVAPGEVG--------- 368

Query: 466 GEVCVRGKTLFSGYYKNPDLTRESIIDGWFHTGDIGQILPNGVVKIIDRKKNLIKISQGE 525
            E+  R   L  GY+ +P+ T E+   GWFH+GD+G +   G + ++DRKK++IK + GE
Sbjct: 369 -EIVHRSPQLMLGYWDDPEKTAEAFRGGWFHSGDLGVMDEEGYITVVDRKKDMIK-TGGE 426

Query: 526 YVA 528
            VA
Sbjct: 427 NVA 429

Length = 523

>gnl|CDD|213318 cd05971, MACS_like_3, Uncharacterized subfamily of medium-chain acyl-CoA synthetase (MACS)

 Score = 74.3 bits (183), Expect = 5e-14
 Identities = 92/354 (25%), Positives = 133/354 (37%), Gaps = 69/354 (19%)

Query: 225 IMYTSGTSGDPKGVVLTHETIATFVSGVDLFLDQFEDKMTVDDVYLSFLPLAHILDRVIE 284
           ++YTSGT+G PKG +  H  +   + GV+L+ +         DV+ +    A I      
Sbjct: 93  LIYTSGTTGPPKGALHGHRVLLGHLPGVELYFELA---PRPGDVFWTPADWAWI------ 143

Query: 285 EYFFRRGASVGYYHGDLNALRDDLMELKPTLLAGVPRVFEKIHEGIKKALEELRPLRRRI 344
                              L D L+   P L  GVP V                  R + 
Sbjct: 144 -----------------GGLLDVLL---PALYFGVPVV----------------AYRMQR 167

Query: 345 FDALYKYKLAWMNMGYKQREA--SPLADLLAFRKV---KARLGGRLRLVISGGAPLSTEV 399
           FD   +   A M   Y    A   P A L   R+V   +AR   RLR V SGG  L  E+
Sbjct: 168 FDP--ERAFALMRR-YGVTNAFLPPTA-LKMMRRVGSERARYDLRLRAVASGGESLGEEL 223

Query: 400 EEFLRVTCCAFLVQGYGLTETCGPTTVC---FPDEMCMVGTAGPVSVYSELRLEEVPEMG 456
            E+ R      + + YG TE       C    P     +G   P        +  V + G
Sbjct: 224 LEWARDELGLTVNEFYGQTEANLVVGNCAALGPARPGSMGKPVPGH-----EVAVVDDAG 278

Query: 457 YSPLDDPPCGEVCVR--GKTLFSGYYKNPDLTRESIIDGWFHTGDIGQILPNGVVKIIDR 514
             P+     GE+ V+     +F GY+ NP+ T       W  TGD+G+   +G +    R
Sbjct: 279 -RPVPPGEVGEIAVKRPDPVMFLGYWNNPEATAAKFAGDWLLTGDLGRRDADGYLWFKGR 337

Query: 515 KKNLIKISQGEYVALEYLENVYCVAPIIEDIWVYG--DSLKSMLV-AVVVPCEE 565
             ++IK S G  +    +E      P + +  V G  D  +  +V A VV  E 
Sbjct: 338 ADDVIK-SSGYRIGPAEIEECLLKHPAVLEAAVVGVPDPERGEIVKAFVVLAEG 390

MACS catalyzes the two-step activation of medium chain fatty acids (containing 4-12 carbons). The carboxylate substrate first reacts with ATP to form an acyl-adenylate intermediate, which then reacts with CoA to produce an acyl-CoA ester. MACS enzymes are localized to mitochondria. Length = 439

>gnl|CDD|215312 PLN02574, PLN02574, 4-coumarate--CoA ligase-like

 Score = 74.5 bits (183), Expect = 7e-14
 Identities = 60/181 (33%), Positives = 85/181 (46%), Gaps = 28/181 (15%)

Query: 383 GRLRLVISGGAPLSTE-VEEFLRVTCCAFLVQGYGLTETCGPTTVCFPDEMCMVGTAG-- 439
             L+ V  G APLS + +++F++       +QGYG+TE+              VGT G  
Sbjct: 319 KSLKQVSCGAAPLSGKFIQDFVQTLPHVDFIQGYGMTESTA------------VGTRGFN 366

Query: 440 --PVSVYSELRLEEVPEMGYSPLD------DPP--CGEVCVRGKTLFSGYYKNPDLTRES 489
              +S YS + L   P M    +D       PP  CGE+ ++G  +  GY  NP  T+ +
Sbjct: 367 TEKLSKYSSVGLL-APNMQAKVVDWSTGCLLPPGNCGELWIQGPGVMKGYLNNPKATQST 425

Query: 490 II-DGWFHTGDIGQILPNGVVKIIDRKKNLIKISQGEYVALEYLENVYCVAPIIEDIWVY 548
           I  DGW  TGDI     +G + I+DR K +IK  +G  +A   LE V    P I D  V 
Sbjct: 426 IDKDGWLRTGDIAYFDEDGYLYIVDRLKEIIKY-KGFQIAPADLEAVLISHPEIIDAAVT 484

Query: 549 G 549
            
Sbjct: 485 A 485

Length = 560

>gnl|CDD|236235 PRK08314, PRK08314, long-chain-fatty-acid--CoA ligase; Validated

 Score = 74.2 bits (183), Expect = 7e-14
 Identities = 55/223 (24%), Positives = 85/223 (38%), Gaps = 36/223 (16%)

Query: 78  TYKEVYEEVLQIVSAL-RASGAEPGCRVGIYGANCPQWVEAMEACNALSLICVPLYDTLG 136
           +Y+E+ EE  ++   L +  G   G RV +Y  N PQ+V A  A    + + VP+     
Sbjct: 37  SYRELLEEAERLAGYLQQECGVRKGDRVLLYMQNSPQFVIAYYAILRANAVVVPVNPMNR 96

Query: 137 PGAVNFILDHAEIDFVFV-QD--KKVKELLSPDCRSAQRLRVMVCFTSLTAEQKEMAVQT 193
              +   +  +      V  +   KV   +        RLR ++           +  + 
Sbjct: 97  EEELAHYVTDSGARVAIVGSELAPKVAPAVG-----NLRLRHVIV----AQYSDYLPAEP 147

Query: 194 GIKPYSW-------DEFLHLGKVNEMEIL-----PP----QPFNICTIMYTSGTSGDPKG 237
            I   +W             G V   E L     PP     P ++  + YTSGT+G PKG
Sbjct: 148 EIAVPAWLRAEPPLQALAPGGVVAWKEALAAGLAPPPHTAGPDDLAVLPYTSGTTGVPKG 207

Query: 238 VVLTHETI-ATFVSGVDLFLDQFEDKMTVDDVYLSFLPLAHIL 279
            + TH T+ A  V  V           T + V L+ LPL H+ 
Sbjct: 208 CMHTHRTVMANAVGSVLWS------NSTPESVVLAVLPLFHVT 244

Length = 546

>gnl|CDD|235146 PRK03640, PRK03640, O-succinylbenzoic acid--CoA ligase; Provisional

 Score = 71.9 bits (177), Expect = 3e-13
 Identities = 54/202 (26%), Positives = 83/202 (41%), Gaps = 35/202 (17%)

Query: 77  KTYKEVYEEVLQIVSALRASGAEPGCRVGIYGANCPQWVEAMEACNALSLICVPLYDTLG 136
            T+ E++E V+ +   L A G + G RV +   N  + +  + A   L  + V L   L 
Sbjct: 28  VTFMELHEAVVSVAGKLAALGVKKGDRVALLMKNGMEMILVIHALQQLGAVAVLLNTRLS 87

Query: 137 PGAVNFILDHAEIDFVFVQDKKVKELLSPDCRSAQRLRVMVCFTSLTAEQKEMAVQTGIK 196
              + + LD AE+  +   D    + L P           V F  L    KE       +
Sbjct: 88  REELLWQLDDAEVKCLITDDDFEAK-LIPGIS--------VKFAELMNGPKE--EAEIQE 136

Query: 197 PYSWDEFLHLGKVNEMEILPPQPFNICTIMYTSGTSGDPKGVVLTHETIATFVSGVDLFL 256
            +  DE                   + TIMYTSGT+G PKGV+ T+     + S V   L
Sbjct: 137 EFDLDE-------------------VATIMYTSGTTGKPKGVIQTYGN--HWWSAVGSAL 175

Query: 257 DQFEDKMTVDDVYLSFLPLAHI 278
           +     +T DD +L+ +P+ HI
Sbjct: 176 NL---GLTEDDCWLAAVPIFHI 194

Length = 483

>gnl|CDD|213282 cd05914, FACL_like_3, Uncharacterized subfamily of fatty acid CoA ligase (FACL)

 Score = 71.5 bits (176), Expect = 4e-13
 Identities = 59/195 (30%), Positives = 90/195 (46%), Gaps = 28/195 (14%)

Query: 371 LLAFRKVKARLGGRLRLVISGGAPLSTEVEE---FLRVTCCAFLVQGYGLTETCGPTTVC 427
           L+A  +        LR V  GGA +S  + +    L +     + +GYGL+E     ++ 
Sbjct: 225 LVAAVEQGPLPPESLRFVAVGGARVSPSLLQRARALGLP----VYEGYGLSECASVVSLN 280

Query: 428 FPDEMCMVGTAGPVSVYSELRLEEVPEMGYSPLDDPPCGEVCVRGKTLFSGYYKNPDLTR 487
            P      G+ G    + ++ +            D   GE+ VRG +L  GY   P  T 
Sbjct: 281 TPGAD-RPGSVGKPLPHVQVSIAN----------D---GEILVRG-SLMLGYLGEPPAT- 324

Query: 488 ESIIDGWFHTGDIGQILPNGVVKIIDRKKNLIKISQGEYVALEYLENVYCVAPIIEDIWV 547
               D W+ TGD+G +   G + I  RKKNLI  S G  V+ E++E+    AP I    V
Sbjct: 325 ----DDWWATGDLGHLDEEGYLYINGRKKNLIITSFGRNVSPEWVESELQQAPAIAQAVV 380

Query: 548 YGDSLKSMLVAVVVP 562
           +GD+ +  LVA++VP
Sbjct: 381 FGDA-QPFLVALIVP 394

Fatty acyl-CoA ligases catalyze the ATP-dependent activation of fatty acids in a two-step reaction. The carboxylate substrate first reacts with ATP to form an acyl-adenylate intermediate, which then reacts with CoA to produce an acyl-CoA ester. This is a required step before free fatty acids can participate in most catabolic and anabolic reactions. Length = 448

>gnl|CDD|213315 cd05968, AACS_like, Uncharacterized acyl-CoA synthetase subfamily similar to Acetoacetyl-CoA synthetase

 Score = 71.5 bits (176), Expect = 5e-13
 Identities = 48/165 (29%), Positives = 62/165 (37%), Gaps = 51/165 (30%)

Query: 78  TYKEVYEEVLQIVSALRASGAEPGCRVGIYGANCPQWVEAMEACNALSLICVPLYDTLGP 137
           TY E+  EV ++ S L A G   G RVGIY    P+ V A+ A   +  I VP++   GP
Sbjct: 9   TYSELAREVNRLASGLAALGLGKGDRVGIYMPMIPEAVVALLAIAKIGAIAVPIFSGFGP 68

Query: 138 GAVNFILDHAEIDFVFVQDKKVKELLSPDCRSAQRLRVMVCFTSLTAEQKEMAVQTGIKP 197
            AV   L  AE   +   D                                         
Sbjct: 69  DAVATRLQDAEAKVLITADG---------------------------------------- 88

Query: 198 YSWDEFLHLGKVNEMEILPPQPFNICTIMYTSGTSGDPKGVVLTH 242
                FL  GK  +++  P        I+YTSGT+G PKG V TH
Sbjct: 89  -----FLRRGKRVDLKDDP------AMIIYTSGTTGKPKGTVHTH 122

This uncharacterized acyl-CoA synthetase family is highly homologous to acetoacetyl-CoA synthetase. However, the proteins in this family exist in only bacteria and archaea. AACS is a cytosolic ligase that specifically activates acetoacetate to its coenzyme A ester by a two-step reaction. Acetoacetate first reacts with ATP to form an acyl-adenylate intermediate, which then reacts with CoA to produce an acyl-CoA ester. This is the first step of the mevalonate pathway of isoprenoid biosynthesis via isopentenyl diphosphate. Isoprenoids are a large class of compounds found in all living organisms. Length = 474

>gnl|CDD|236235 PRK08314, PRK08314, long-chain-fatty-acid--CoA ligase; Validated

 Score = 69.2 bits (170), Expect = 3e-12
 Identities = 56/168 (33%), Positives = 75/168 (44%), Gaps = 29/168 (17%)

Query: 370 DLLAFRKVKARLGGRLRLVISGGAPLSTEVEEFLRVTCCAFLVQGYGLTETCGPTTVCFP 429
           D LA   +  R    LR +  GGA +   V E L+       V+GYGLTET   T    P
Sbjct: 292 DFLASPGLAERDLSSLRYIGGGGAAMPEAVAERLKELTGLDYVEGYGLTETMAQTHSNPP 351

Query: 430 DE---MCM-VGTAG-------PVSVYSELRLEEVPEMGYSPLDDPPCGEVCVRGKTLFSG 478
           D     C+ + T G       P +      LEE+P            GE+ V G  +F G
Sbjct: 352 DRPKLQCLGIPTFGVDARVIDPET------LEELP--------PGEVGEIVVHGPQVFKG 397

Query: 479 YYKNPDLTRESII--DG--WFHTGDIGQILPNGVVKIIDRKKNLIKIS 522
           Y+  P+ T E+ I  DG  +F TGD+G++   G   I DR K +I  S
Sbjct: 398 YWNRPEATAEAFIEIDGKRFFRTGDLGRMDEEGYFFITDRLKRMINAS 445

Length = 546

>gnl|CDD|236236 PRK08315, PRK08315, AMP-binding domain protein; Validated

 Score = 69.5 bits (171), Expect = 3e-12
 Identities = 52/191 (27%), Positives = 77/191 (40%), Gaps = 34/191 (17%)

Query: 78  TYKEVYEEVLQIVSALRASGAEPGCRVGIYGANCPQWVEAMEACNALSLICV---PLYDT 134
           TY+E  EEV  +   L A G E G RVGI+  N P+WV    A   +  I V   P Y  
Sbjct: 45  TYREFNEEVDALAKGLLALGIEKGDRVGIWAPNVPEWVLTQFATAKIGAILVTINPAYRL 104

Query: 135 LGPGAVNFILDHAEIDFVFVQDK--------KVKELLSPDCRSAQRLRVMVCFTSLTAEQ 186
                + + L+ +    +   D          + EL  P+  + +  +       L + +
Sbjct: 105 ---SELEYALNQSGCKALIAADGFKDSDYVAMLYELA-PELATCEPGQ-------LQSAR 153

Query: 187 K---EMAVQTGIKP----YSWDEFLHLGKVNEMEILPP-----QPFNICTIMYTSGTSGD 234
                  +  G +      ++DE L LG+  +   L        P +   I YTSGT+G 
Sbjct: 154 LPELRRVIFLGDEKHPGMLNFDELLALGRAVDDAELAARQATLDPDDPINIQYTSGTTGF 213

Query: 235 PKGVVLTHETI 245
           PKG  LTH  I
Sbjct: 214 PKGATLTHRNI 224

Length = 559

>gnl|CDD|235731 PRK06188, PRK06188, acyl-CoA synthetase; Validated

 Score = 67.7 bits (166), Expect = 7e-12
 Identities = 53/201 (26%), Positives = 84/201 (41%), Gaps = 36/201 (17%)

Query: 385 LRLVISGGAPLS-TEVEEFLRVTCCAFLVQGYGLTETCGPTTVCFPDEMC-----MVGTA 438
           L  V  G +P+S   + E +      F  Q YG TE     T     +        + + 
Sbjct: 283 LETVYYGASPMSPVRLAEAIERFGPIF-AQYYGQTEAPMVITYLRKRDHDPDDPKRLTSC 341

Query: 439 GPVSVYSELRL-----EEVPEMGYSPLDDPPCGEVCVRGKTLFSGYYKNPDLTRESIIDG 493
           G  +    + L      EV         +   GE+CVRG  +  GY+  P+ T E+  DG
Sbjct: 342 GRPTPGLRVALLDEDGREVA------QGEV--GEICVRGPLVMDGYWNRPEETAEAFRDG 393

Query: 494 WFHTGDIGQILPNGVVKIIDRKKNLIKISQGEYVALEYLENVY---------CVAPIIED 544
           W HTGD+ +   +G   I+DRKK++I ++ G  V    +E+V           V  + ++
Sbjct: 394 WLHTGDVAREDEDGFYYIVDRKKDMI-VTGGFNVFPREVEDVLAEHPAVAQVAVIGVPDE 452

Query: 545 IWVYGDSLKSMLVAVVVPCEE 565
            W  G+++     AVVV    
Sbjct: 453 KW--GEAVT----AVVVLRPG 467

Length = 524

>gnl|CDD|236236 PRK08315, PRK08315, AMP-binding domain protein; Validated

 Score = 67.5 bits (166), Expect = 1e-11
 Identities = 29/72 (40%), Positives = 42/72 (58%), Gaps = 10/72 (13%)

Query: 466 GEVCVRGKTLFSGYYKNPDLTRESI-IDGWFHTGDIGQILPNGVVKIIDRKKNLIKISQG 524
           GE+C RG ++  GY+ +P+ T E+I  DGW HTGD+  +   G V I+ R K++I I  G
Sbjct: 399 GELCTRGYSVMKGYWNDPEKTAEAIDADGWMHTGDLAVMDEEGYVNIVGRIKDMI-IRGG 457

Query: 525 EYVALEYLENVY 536
                   EN+Y
Sbjct: 458 --------ENIY 461

Length = 559

>gnl|CDD|213320 cd05973, MACS_like_2, Uncharacterized subfamily of medium-chain acyl-CoA synthetase (MACS)

 Score = 67.1 bits (164), Expect = 1e-11
 Identities = 99/395 (25%), Positives = 151/395 (38%), Gaps = 94/395 (23%)

Query: 215 LPPQPFNICTIMYTSGTSGDPKGVVLTHETIATFVSGVDLFLDQFEDKMTVDDVYLSFLP 274
           L    F     MYTSGT+G PKGV +    +A F + +   +D     +  DDV+ +   
Sbjct: 86  LDDDLF---AQMYTSGTTGLPKGVPVPLNALAAFYAYMRYAID-----LRDDDVFWN--- 134

Query: 275 LAHILDRVIEEYFFRRGASVGYYHGDLNALRDDLMELKPTLLAGVPRVFEKIHEGIKKAL 334
                            A  G+ +G   A+        P L  G+  VF    EG   A 
Sbjct: 135 ----------------IADPGWAYGLYYAI------TGP-LAMGITTVF---LEGGFTA- 167

Query: 335 EELRPLRRRIFDALYKYKLAWMNMGYKQREASPLADLLAFRKVKA-------RLGGRLRL 387
                     +D L +  +   N        SP A    +R + A       R+  +LR+
Sbjct: 168 -------ENTYDVLERLGVT--NFAG-----SPTA----YRMLMAAGADAAARIKLKLRV 209

Query: 388 VISGGAPLSTEVEEFLRVTCCAFLVQGYGLTETCGPTTVCFPDEMCMVGTAG----PVSV 443
             S G PL+ EV  + +      +   YG TET     V     +     AG    P+  
Sbjct: 210 ASSAGEPLNPEVVRWFQANLGVTIHDHYGQTET--GMPVGNHHALAHEVRAGSMGLPLPG 267

Query: 444 YSELRLEEVPEMGYSPLDDPPCGEVCVRGKT----LFSGYYKNPDLTRESIIDGWFHTGD 499
           Y    L++  +    PL D   G++ +   +     FSGY+ +P+ T E I   W+ TGD
Sbjct: 268 YRIAVLDDDGQ----PLADGEPGQLAIDVASSPLLWFSGYWDDPEKTAELIAGRWYVTGD 323

Query: 500 IGQILPNGVVKIIDRKKNLIKISQGEYVALEYLENVYCVAPIIEDIWVYG--DSLKSMLV 557
           + +   +G    I R  ++I IS G  +    +E+     P + +  V G  D L+  +V
Sbjct: 324 LVERDEDGYFWFIGRADDVI-ISAGYRIGPFDVESALLEHPAVAEAAVVGVPDPLRGEIV 382

Query: 558 -AVVVPCEEDTKKWAYSNGHAGS---FLELCSLVQ 588
            A VV             G+AGS     EL   V+
Sbjct: 383 KAFVV----------LKEGYAGSDELAEELQLFVK 407

MACS catalyzes the two-step activation of medium chain fatty acids (containing 4-12 carbons). The carboxylate substrate first reacts with ATP to form an acyl-adenylate intermediate, which then reacts with CoA to produce an acyl-CoA ester. MACS enzymes are localized to mitochondria. Length = 440

>gnl|CDD|181644 PRK09088, PRK09088, acyl-CoA synthetase; Validated

 Score = 65.2 bits (159), Expect = 5e-11
 Identities = 51/180 (28%), Positives = 83/180 (46%), Gaps = 28/180 (15%)

Query: 383 GRLRLVISGGAPLSTE-----VEEFLRVTCCAFLVQGYGLTETCGPTTVCFPDEMCMV-- 435
             L  + +GGAP + E     +++ + +        G+G++E    T      +  ++  
Sbjct: 252 RHLTALFTGGAPHAAEDILGWLDDGIPMVD------GFGMSE--AGTVFGMSVDCDVIRA 303

Query: 436 --GTAGPVSVYSELRLEEVPEMGYSPLDDPPCG---EVCVRGKTLFSGYYKNPDLTRESI 490
             G AG  +   + R+  V + G    +D P G   E+ +RG  L  GY++ P  T  + 
Sbjct: 304 KAGAAGIPTPTVQTRV--VDDQG----NDCPAGVPGELLLRGPNLSPGYWRRPQATARAF 357

Query: 491 I-DGWFHTGDIGQILPNGVVKIIDRKKNLIKISQGEYVALEYLENVYCVAPIIEDIWVYG 549
             DGWF TGDI +   +G   ++DRKK++  IS GE V    +E V    P I +  V G
Sbjct: 358 TGDGWFRTGDIARRDADGFFWVVDRKKDMF-ISGGENVYPAEIEAVLADHPGIRECAVVG 416

Length = 488

>gnl|CDD|235722 PRK06164, PRK06164, acyl-CoA synthetase; Validated

 Score = 64.8 bits (158), Expect = 7e-11
 Identities = 93/460 (20%), Positives = 140/460 (30%), Gaps = 106/460 (23%)

Query: 78  TYKEVYEEVLQIVSALRASGAEPGCRVGIYGANCPQWVEAMEACNALSLICVPLYDTLGP 137
           +  E+   V ++ + L A G   G RV ++  NC +WV    AC  L    + +      
Sbjct: 37  SRAELRALVDRLAAWLAAQGVRRGDRVAVWLPNCIEWVVLFLACARLGATVIAVNTRYRS 96

Query: 138 GAVNFILDHAEIDFVFVQDK-------KVKELLSPDCRSAQRLRVMVCFTSLTAEQKEMA 190
             V  IL      ++ V           +   + PD     R   +V   +         
Sbjct: 97  HEVAHILGRGRARWLVVWPGFKGIDFAAILAAVPPDALPPLRAIAVVDDAADATPAPAPG 156

Query: 191 VQTGIKPYSWDEFLHLGKVNEMEILPPQPFNICTIMYT-SGTSGDPKGV------VLTHE 243
            +  +        L                +   +++T SGT+  PK V      +L H 
Sbjct: 157 ARVQLFA------LPDPAPPAAAGERAADPDAGALLFTTSGTTSGPKLVLHRQATLLRHA 210

Query: 244 TIATFVSGVDLFLDQFEDKMTVDDVYLSFLPLAHILDRVIEEYFFRRGASVGYYHGDLNA 303
                  G D              V L+ LP                G   G+       
Sbjct: 211 RAIARAYGYD-----------PGAVLLAALPFC--------------GV-FGF------- 237

Query: 304 LRDDLMELKPTLLAGVPRVFEKIHEGIK--KALEELR--------PLRRRIFDALYKYKL 353
                  L   L  G P V E + +  +  +AL   R         + RRI D       
Sbjct: 238 -----STLLGALAGGAPLVCEPVFDAARTARALRRHRVTHTFGNDEMLRRILDTA----- 287

Query: 354 AWMNMGYKQREASPLADLLAFRKVKARLGGRLRLVISGGAPL-----STEVEEFLRVTCC 408
                   +R   P A L  F      LG    L  + G PL     S+EV+  +     
Sbjct: 288 -------GERADFPSARLFGFASFAPALGELAALARARGVPLTGLYGSSEVQALV----- 335

Query: 409 AFLVQGYGLTETCGPTTVCFPDEMCMVGTAGPVSVYSELRLEEVPEMGYSPLDDPPCGEV 468
                         P T      +      G      E R+        + L D   GE+
Sbjct: 336 -----------ALQPATDPVSVRI----EGGGRPASPEARVRARDPQDGALLPDGESGEI 380

Query: 469 CVRGKTLFSGYYKNPDLTRESII-DGWFHTGDIGQILPNG 507
            +R  +L  GY  NPD T  ++  DG+F TGD+G    +G
Sbjct: 381 EIRAPSLMRGYLDNPDATARALTDDGYFRTGDLGYTRGDG 420

Length = 540

>gnl|CDD|235865 PRK06814, PRK06814, acylglycerophosphoethanolamine acyltransferase; Provisional

 Score = 65.0 bits (159), Expect = 8e-11
 Identities = 56/195 (28%), Positives = 80/195 (41%), Gaps = 42/195 (21%)

Query: 385  LRLVISGGAPLSTEVEEF------LRVTCCAFLVQGYGLTETCGPTTVCFPDEMCMVGTA 438
            LR V +G   +  E  +       +R+      ++GYG+TET  P            GT 
Sbjct: 909  LRYVFAGAEKVKEETRQTWMEKFGIRI------LEGYGVTET-APVIALNTPMHNKAGTV 961

Query: 439  GPVSVYSELRLEEVP--EMGYSPLDDPPCGEVCVRGKTLFSGYYK--NPDLTRESIIDGW 494
            G +    E RLE VP  + G         G + VRG  +  GY +  NP    E   DGW
Sbjct: 962  GRLLPGIEYRLEPVPGIDEG---------GRLFVRGPNVMLGYLRAENPG-VLEPPADGW 1011

Query: 495  FHTGDIGQILPNGVVKIIDRKKNLIKISQGEYVALEYLENVYCVAPIIEDIWVYGDSLKS 554
            + TGDI  I   G + I  R K   KI+ GE ++L  +E       +  ++W        
Sbjct: 1012 YDTGDIVTIDEEGFITIKGRAKRFAKIA-GEMISLAAVEE------LAAELWPDALH--- 1061

Query: 555  MLVAVVVPCEEDTKK 569
               AV +P   D +K
Sbjct: 1062 --AAVSIP---DARK 1071

Length = 1140

>gnl|CDD|236169 PRK08162, PRK08162, acyl-CoA synthetase; Validated

 Score = 63.8 bits (156), Expect = 1e-10
 Identities = 48/212 (22%), Positives = 73/212 (34%), Gaps = 28/212 (13%)

Query: 75  VWKTYKEVYEEVLQIVSALRASGAEPGCRVGIYGANCPQWVEAMEACNALSLICVPLYDT 134
             +T+ E Y    ++ SAL   G   G  V +   N P  VEA         +   L   
Sbjct: 42  RRRTWAETYARCRRLASALARRGIGRGDTVAVLLPNIPAMVEAHFGVPMAGAVLNTLNTR 101

Query: 135 LGPGAVNFILDHAEIDFVFVQDKKVKELLSPDCRSAQRLRVMVCFTSLTAEQK------- 187
           L   ++ F+L H E   + V D +  E+           + +V                 
Sbjct: 102 LDAASIAFMLRHGEAKVLIV-DTEFAEVAREALALLPGPKPLVIDVDDPEYPGGRFIGAL 160

Query: 188 --EMAVQTGIKPYSWDEFLHLGKVNEMEILPPQPFNICTIMYTSGTSGDPKGVVLTHETI 245
             E  + +G   ++W              LP   ++   + YTSGT+G+PKGVV  H   
Sbjct: 161 DYEAFLASGDPDFAW-------------TLPADEWDAIALNYTSGTTGNPKGVVYHHRGA 207

Query: 246 ATFVSGVDLFLDQFEDKMTVDDVYLSFLPLAH 277
                      +     M    VYL  LP+ H
Sbjct: 208 YLNALS-----NILAWGMPKHPVYLWTLPMFH 234

Length = 545

>gnl|CDD|236120 PRK07867, PRK07867, acyl-CoA synthetase; Validated

 Score = 64.3 bits (157), Expect = 1e-10
 Identities = 89/365 (24%), Positives = 136/365 (37%), Gaps = 75/365 (20%)

Query: 200 WDEFLHLGKVNEMEILPPQPFNICTIMYTSGTSGDPKGVVLTHETIATFVSGVDLFLDQF 259
           W + L   +  E       P ++  +++TSGTSGDPK V  TH  +A   +GV L   +F
Sbjct: 132 WADELAAHRDAEPPFRVADPDDLFMLIFTSGTSGDPKAVRCTHRKVA--SAGVML-AQRF 188

Query: 260 EDKMTVDDV-YLSFLPLAHILDRVIEEYFFRRGASVGYYHGDLNALRDDLMELKPTLLAG 318
              +  DDV Y+S +PL                     +H   NA+   +      L AG
Sbjct: 189 G--LGPDDVCYVS-MPL---------------------FHS--NAV---MAGWAVALAAG 219

Query: 319 VPRVFEKIHEGIKKALEELRPLRRRIFDA------LYKYKLAWMNMGYKQREASPLADLL 372
                                LRR+ F A      + +Y   + N   K     PL+ +L
Sbjct: 220 ASIA-----------------LRRK-FSASGFLPDVRRYGATYANYVGK-----PLSYVL 256

Query: 373 AFRKVKARLGGRLRLVISG-GAPLSTEVEEFLRVTCCAFLVQGYGLTETCGPTTVCFPD- 430
           A  +        LR+V    GAP   ++  F R   C  +V G+G TE  G      PD 
Sbjct: 257 ATPERPDDADNPLRIVYGNEGAP--GDIARFARRFGCV-VVDGFGSTEG-GVAITRTPDT 312

Query: 431 -EMCMVGTAGPVSVYSELRLEEVP----EMGYSPLDDPPCGE-VCVRGKTLFSGYYKNPD 484
               +      V++       E P      G     D   GE V   G   F GYY +P+
Sbjct: 313 PPGALGPLPPGVAIVDPDTGTECPPAEDADGRLLNADEAIGELVNTAGPGGFEGYYNDPE 372

Query: 485 LTRESIIDGWFHTGDIGQILPNGVVKIIDRKKNLIKISQGEYVALEYLENVYCVAPIIED 544
              E +  G + +GD+     +G      R  + +++  GE +    +E +    P   +
Sbjct: 373 ADAERMRGGVYWSGDLAYRDADGYAYFAGRLGDWMRVD-GENLGTAPIERILLRYPDATE 431

Query: 545 IWVYG 549
           + VY 
Sbjct: 432 VAVYA 436

Length = 529

>gnl|CDD|213325 cd12117, A_NRPS_Srf_like, The adenylation domain of nonribosomal peptide synthetases (NRPS), including Bacillus subtilis termination module Surfactin (SrfA-C)

 Score = 64.1 bits (157), Expect = 1e-10
 Identities = 38/199 (19%), Positives = 64/199 (32%), Gaps = 35/199 (17%)

Query: 78  TYKEVYEEVLQIVSALRASGAEPGCRVGIYGANCPQWVEAMEACNALSLICVPLYDTLGP 137
           TY E+ E   ++   LRA G  PG  V +     P+ V A+ A        VPL      
Sbjct: 14  TYAELNERANRLARRLRARGVGPGDVVALLLERSPELVVAILAILKAGAAYVPLDPAYPA 73

Query: 138 GAVNFILDHAEIDFVFVQDKKVKELLSPDCRSAQRLRVMVCFTSLTAEQKEMAVQTGIKP 197
             + F+L+ +    +   +                   +V        +           
Sbjct: 74  ERLAFMLEDSGARVLLTDESLAPLA-------RADQLPLVILEEELDAEDAGPPA----- 121

Query: 198 YSWDEFLHLGKVNEMEILPPQPFNICTIMYTSGTSGDPKGVVLTHETIATFVSGVDLFLD 257
                                  ++  +MYTSG++G PKGV + H  +   V   + ++ 
Sbjct: 122 -----------------PAVDADDLAYVMYTSGSTGRPKGVAVPHRGVVRLVRNTN-YIA 163

Query: 258 QFEDKMTVDDVYLSFLPLA 276
                   DD +L   PL+
Sbjct: 164 LDP-----DDRFLQLSPLS 177

The adenylation (A) domain of NRPS recognizes a specific amino acid or hydroxy acid and activates it as an (amino) acyl adenylate by hydrolysis of ATP. The activated acyl moiety then forms a thioester to the enzyme-bound cofactor phosphopantetheine of a peptidyl carrier protein domain. NRPSs are large multifunctional enzymes which synthesize many therapeutically useful peptides in bacteria and fungi via a template-directed, nucleic acid independent nonribosomal mechanism. These natural products include antibiotics, immunosuppressants, plant and animal toxins, and enzyme inhibitors. NRPS has a distinct modular structure in which each module is responsible for the recognition, activation, and, in some cases, modification of a single amino acid residue of the final peptide product. The modules can be subdivided into domains that catalyze specific biochemical reactions. This family includes the adenylation domain of the Bacillus subtilis termination module (Surfactin domain, SrfA-C) which recognizes a specific amino acid building block, which is then activated and transferred to the terminal thiol of the 4'-phosphopantetheine (Ppan) arm of the downstream peptidyl carrier protein (PCP) domain. Length = 474

>gnl|CDD|237108 PRK12467, PRK12467, peptide synthase; Provisional

 Score = 64.0 bits (156), Expect = 2e-10
 Identities = 112/520 (21%), Positives = 177/520 (34%), Gaps = 133/520 (25%)

Query: 78  TYKEVYEEVLQIVSALRASGAEPGCRVGIYGANCPQWVEAMEACNALSLICVPLYDTLGP 137
           +Y E+  +  ++   L A+G  P   VGI      + V  + A        VPL      
Sbjct: 539 SYAELNRQANRLAHVLIAAGVGPDVLVGIAVERSIEMVVGLLAVLKAGGAYVPLDPEYPQ 598

Query: 138 GAVNFILDHAEIDFVFVQDKKVKELLSPDCRSAQRLRVMVCFTSLTAEQKEMAVQTGIKP 197
             + ++LD + +  +  Q   + +L  P       LR +     L      +   +G  P
Sbjct: 599 DRLAYMLDDSGVRLLLTQSHLLAQLPVPA-----GLRSLC----LDEPADLLCGYSGHNP 649

Query: 198 YSWDEFLHLGKVNEMEILPPQPFNICTIMYTSGTSGDPKGVVLTHETIATFVSGVDLFLD 257
                            +   P N+  ++YTSG++G PKGV ++H  +A +V  +   L 
Sbjct: 650 E----------------VALDPDNLAYVIYTSGSTGQPKGVAISHGALANYVCVIAERLQ 693

Query: 258 QFEDKMTVDDVYLSFLPLAHILDRVIEEYF--FRRGASV---GY-YHGDLNALRDDLMEL 311
                +  DD  L     A   D  + E F     GA++         D  A    + + 
Sbjct: 694 -----LAADDSMLMVSTFA--FDLGVTELFGALASGATLHLLPPDCARDAEAFAALMADQ 746

Query: 312 KPTLLAGVPRVFEKIHEGIKKALEELRPLRRRIFDALYKYKLAWMNMGYKQREASPLADL 371
             T+L  VP   + + +     +   RP R  +                   EA  + DL
Sbjct: 747 GVTVLKIVPSHLQALLQA--SRVALPRPQRALVCGG----------------EALQV-DL 787

Query: 372 LAFRKVKARLGGRLRLVISGGAPLSTEVEEFLRVTCCAFLVQGYGLTETCGPTTVCFPDE 431
           LA R      G R                          L+  YG TE    TTV     
Sbjct: 788 LA-RVRALGPGAR--------------------------LINHYGPTE----TTV----- 811

Query: 432 MCMVGTAGPVSVYSELRLEEVPEMGYSPLDDP--------------PC-----GEVCVRG 472
                         EL  EE    G  P+  P              P      GE+ + G
Sbjct: 812 ---------GVSTYELSDEERD-FGNVPIGQPLANLGLYILDHYLNPVPVGVVGELYIGG 861

Query: 473 KTLFSGYYKNPDLTRESII------DG--WFHTGDIGQILPNGVVKIIDRKKNLIKISQG 524
             L  GY++ P LT E  +      DG   + TGD+ +   +GV++ + R  + +KI +G
Sbjct: 862 AGLARGYHRRPALTAERFVPDPFGADGGRLYRTGDLARYRADGVIEYLGRMDHQVKI-RG 920

Query: 525 EYVALEYLENVYCVAPIIEDIWV--YGDSLKSMLVAVVVP 562
             + L  +E      P + +  V          LVA +VP
Sbjct: 921 FRIELGEIEARLLAQPGVREAVVLAQPGDAGLQLVAYLVP 960

Length = 3956

>gnl|CDD|233803 TIGR02262, benz_CoA_lig, benzoate-CoA ligase family

 Score = 62.9 bits (153), Expect = 3e-10
 Identities = 105/458 (22%), Positives = 167/458 (36%), Gaps = 78/458 (17%)

Query: 78  TYKEVYEEVLQIVSALRASGAEPGCRVGIYGANCPQWVEAMEACNALSLICVPLYDTLGP 137
           +Y E+  +V ++ +ALR  G +   RV +   +   +  A        ++ V L   L  
Sbjct: 32  SYGELEAQVRRLGAALRRLGVKREERVLLLMLDGVDFPIAFLGAIRAGIVPVALNTLLTA 91

Query: 138 GAVNFILDHAEIDFVFVQDKKVKELLSPDCRSAQRLRVMVCFTSLTAEQKEMAVQTGIKP 197
               ++L+ +    VFV   ++  ++      +  L   V      A + ++A       
Sbjct: 92  DDYAYMLEDSRARVVFVS-GELLPVIKAALGKSPHLEHRVVVGRPEAGEVQLA------- 143

Query: 198 YSWDEFLHLGKVNEMEILPPQPFNICTIMYTSGTSGDPKGVVLTHETI---ATFVSGVDL 254
               E L      + +    Q  +    +Y+SG++G PKGVV TH      A   +   L
Sbjct: 144 ----ELLATE-SEQFKPAATQADDPAFWLYSSGSTGMPKGVVHTHSNPYWTAELYARNTL 198

Query: 255 FLDQFEDKMTVDDVYLSFLPLAHILDRVIEEYFFRRGASVGYYHGDLNALRDDLMELKPT 314
            + +       DDV  S   L           FF  G          NAL         T
Sbjct: 199 GIRE-------DDVVFSAAKL-----------FFAYGLG--------NAL---------T 223

Query: 315 LLAGVPRVFEKIHEGIKKALEELRPLRRRIFDALYKYK---LAWMNMGYKQREASPLADL 371
               V         G    L   RP    +FD L +++      +   Y        A +
Sbjct: 224 FPMSV---------GATTVLMGERPTPDAVFDRLRRHQPTIFYGVPTLY--------AAM 266

Query: 372 LAFRKVKARLGGRLRLVISGGAPLSTEVEEFLRVTCCAFLVQGYGLTETCGPTTVCFPDE 431
           LA   + A    RLRL  S G  L  EV +  +      +V G G TE         P +
Sbjct: 267 LADPNLPAEDQVRLRLCTSAGEALPAEVGQRWQARFGVDIVDGIGSTEMLHIFLSNLPGD 326

Query: 432 MCMVGTAG-PVSVYSELRLEEVPEMGYSPLDDPPCGEVCVRGKTLFSGYYKNPDLTRESI 490
           +   GT+G PV  Y   RL  V + G       P GE+ + G +  + Y+ N   TR++ 
Sbjct: 327 V-RYGTSGKPVPGY---RLRLVGDGGQDVAAGEP-GELLISGPSSATMYWNNRAKTRDTF 381

Query: 491 IDGWFHTGDIGQILPNGVVKIIDRKKNLIKISQGEYVA 528
              W  +GD      +G      R  +++K+S G YV+
Sbjct: 382 QGEWTRSGDKYVRNDDGSYTYAGRTDDMLKVS-GIYVS 418

Characterized members of this protein family include benzoate-CoA ligase, 4-hydroxybenzoate-CoA ligase, 2-aminobenzoate-CoA ligase, etc. Members are related to fatty acid and acetate CoA ligases. Length = 508

>gnl|CDD|236175 PRK08180, PRK08180, feruloyl-CoA synthase; Reviewed

 Score = 62.6 bits (153), Expect = 4e-10
 Identities = 69/302 (22%), Positives = 108/302 (35%), Gaps = 96/302 (31%)

Query: 225 IMYTSGTSGDPKGVVLTHETIATFVSGVDLFLDQFEDKMTVDDVYLSFLPLAH------I 278
            ++TSG++G PK V+ TH  +      +        ++     V + +LP  H       
Sbjct: 214 FLFTSGSTGLPKAVINTHRMLCANQQMLAQTFPFLAEE---PPVLVDWLPWNHTFGGNHN 270

Query: 279 LDRVIEEYFFRRGASVGYYHGD---LNALRD----DLMELKPTLLAGVPRVFEKIHEGIK 331
           L  V+       G +   Y  D        D    +L E+ PT+   VP+ +E     + 
Sbjct: 271 LGIVL-----YNGGT--LYIDDGKPTPGGFDETLRNLREISPTVYFNVPKGWE----MLV 319

Query: 332 KALEELRPLRRRIFDALYKYKLAWMNMGYKQREASPLADLLAFRKVKARLGGRLRLVISG 391
            ALE    LRRR F                                      RL+L+   
Sbjct: 320 PALERDAALRRRFF-------------------------------------SRLKLLFYA 342

Query: 392 GAPLSTEVEEFL----------RVTCCAFLVQGYGLTETCGPTTVC-FPDEMCMVGTAGP 440
           GA LS +V + L          R+        G G+TET    T    P        AG 
Sbjct: 343 GAALSQDVWDRLDRVAEATCGERIRMMT----GLGMTETAPSATFTTGPLSR-----AGN 393

Query: 441 VSVYSELRLEEVP--EMGYSPLDDPPCGEVCVRGKTLFSGYYKNPDLTRESIID-GWFHT 497
           + +         P  E+   P+      EV V+G  +  GY++ P+LT E+  + G++ +
Sbjct: 394 IGL-------PAPGCEVKLVPVGGKL--EVRVKGPNVTPGYWRAPELTAEAFDEEGYYRS 444

Query: 498 GD 499
           GD
Sbjct: 445 GD 446

Length = 614

>gnl|CDD|236315 PRK08633, PRK08633, 2-acyl-glycerophospho-ethanolamine acyltransferase; Validated

 Score = 63.0 bits (154), Expect = 4e-10
 Identities = 53/173 (30%), Positives = 74/173 (42%), Gaps = 38/173 (21%)

Query: 385  LRLVISGGAPLSTEVEEFLRVTCCAF-------LVQGYGLTETCGPTTVCFPDEMC---- 433
            LRLV++G   L  EV +       AF       +++GYG TET    +V  PD +     
Sbjct: 900  LRLVVAGAEKLKPEVAD-------AFEEKFGIRILEGYGATETSPVASVNLPDVLAADFK 952

Query: 434  --------MVGTAGP-VSVYSELRLEEVPEMGYSPLDDPPCGEVCVRGKTLFSGYYKNPD 484
                     VG   P V+V    R+  V    +  L     G + + G  +  GY  +P+
Sbjct: 953  RQTGSKEGSVGMPLPGVAV----RI--VDPETFEELPPGEDGLILIGGPQVMKGYLGDPE 1006

Query: 485  LTRESIID----GWFHTGDIGQILPNGVVKIIDRKKNLIKISQGEYVALEYLE 533
             T E I D    GW+ TGD G +  +G + I DR     KI  GE V L  +E
Sbjct: 1007 KTAEVIKDIDGIGWYVTGDKGHLDEDGFLTITDRYSRFAKIG-GEMVPLGAVE 1058

Length = 1146

>gnl|CDD|213324 cd12116, A_NRPS_Ta1_like, The adenylation domain of nonribosomal peptide synthetases (NRPS), including salinosporamide A polyketide synthase

 Score = 61.8 bits (151), Expect = 5e-10
 Identities = 54/202 (26%), Positives = 79/202 (39%), Gaps = 31/202 (15%)

Query: 383 GRLRL-VISGGAPLSTEVEEFLRVTCCAFLVQGYGLTETCGPTTVCFPDEMCMVGTAG-P 440
           GR  L  + GG  L  ++ E L  T    L   YG TET   +T           T G P
Sbjct: 205 GRESLTALCGGEALPRDLAERLLSTGAE-LWNMYGPTETTIWSTCARVTAADGPVTIGRP 263

Query: 441 V---SVY---SELRLEEVPEMGYSPLDDPPCGEVCVRGKTLFSGYYKNPDLTRESIIDG- 493
           +    VY    +L+   VP  G         GE+ + G  +  GY   P+LT E  +   
Sbjct: 264 IANTQVYVLDEDLQP--VPP-GV-------PGELYIGGDGVARGYLGRPELTAERFVPDP 313

Query: 494 -------WFHTGDIGQILPNGVVKIIDRKKNLIKISQGEYVALEYLENVYCVAPIIEDIW 546
                   + TGD+ +  P+G ++ + R  + +KI +G  + L  +E      P + D  
Sbjct: 314 FDDPGGRLYRTGDLVRWRPDGRLEYLGRADDQVKI-RGFRIELGEIEAALRAHPGVADAV 372

Query: 547 VY---GDSLKSMLVAVVVPCEE 565
           V           LVA VVP   
Sbjct: 373 VVVREEGPGDQRLVAYVVPKAG 394

The adenylation (A) domain of NRPS recognizes a specific amino acid or hydroxy acid and activates it as an (amino) acyl adenylate by hydrolysis of ATP. The activated acyl moiety then forms a thioester to the enzyme-bound cofactor phosphopantetheine of a peptidyl carrier protein domain. NRPSs are large multifunctional enzymes which synthesize many therapeutically useful peptides in bacteria and fungi via a template-directed, nucleic acid independent nonribosomal mechanism. These natural products include antibiotics, immunosuppressants, plant and animal toxins, and enzyme inhibitors. NRPS has a distinct modular structure in which each module is responsible for the recognition, activation, and in some cases, modification of a single amino acid residue of the final peptide product. The modules can be subdivided into domains that catalyze specific biochemical reactions. This family includes the myxovirescin (TA) antibiotic biosynthetic gene in Myxococcus xanthus; TA production plays a role in predation. It also includes the salinosporamide A polyketide synthase which is involved in the biosynthesis of salinosporamide A, a marine microbial metabolite whose chlorine atom is crucial for potent proteasome inhibition and anticancer activity. Length = 438

>gnl|CDD|235908 PRK07008, PRK07008, long-chain-fatty-acid--CoA ligase; Validated

 Score = 61.3 bits (149), Expect = 9e-10
 Identities = 28/77 (36%), Positives = 45/77 (58%), Gaps = 4/77 (5%)

Query: 459 PLDDPPCGEVCVRGKTLFSGYYKNPDLTRESIIDGWFHTGDIGQILPNGVVKIIDRKKNL 518
           P D    G++ VRG  +   Y++        ++DGWF TGD+  I  +G ++I DR K++
Sbjct: 378 PWDGKAFGDLQVRGPWVIDRYFRGDA---SPLVDGWFPTGDVATIDADGFMQITDRSKDV 434

Query: 519 IKISQGEYVALEYLENV 535
           IK S GE+++   +ENV
Sbjct: 435 IK-SGGEWISSIDIENV 450

Length = 539

>gnl|CDD|213282 cd05914, FACL_like_3, Uncharacterized subfamily of fatty acid CoA ligase (FACL)

 Score = 59.6 bits (145), Expect = 2e-09
 Identities = 52/218 (23%), Positives = 83/218 (38%), Gaps = 40/218 (18%)

Query: 78  TYKEVYEEVLQIVSALRASGAEPGCRVGIYGANCPQWVEAMEACNALSLICVPLYDTLGP 137
           +Y+++++EV  +   LRA G +   R+ +   N   WV A  AC    ++C+P+      
Sbjct: 4   SYQQLWQEVDLLAEQLRALGVK---RIALALDNSIDWVIADLACLQAGIVCIPIPHFFSA 60

Query: 138 GAVNFILDHAEIDFVFVQDKKVKELLSPDCRSAQRLRVMVCFTSLTAEQKEMAVQTGIKP 197
                +L+ A  D +   D        PD  SA                      T    
Sbjct: 61  QQTQHLLNDAGADLLISDD--------PDAASALH--------------------TPFAT 92

Query: 198 YSWDEFLHLGKVNEMEILPPQPFNICTIMYTSGTSGDPKGVVLTHETIATFVSGVDLFLD 257
              D ++ L            P     I YTSG++G PKGV L+   + T    V   L 
Sbjct: 93  LGEDLYIALRPSAN---PVELPAGTAKITYTSGSTGQPKGVCLSAAALET----VAQSLA 145

Query: 258 QFEDKMTVDDVYLSFLPLAHILDRVIEEYF-FRRGASV 294
           +    +   + +L  LPLA +L+ +   Y     GA+V
Sbjct: 146 EAIA-ILEPERHLCLLPLATLLENIAGVYAPLLMGATV 182

Fatty acyl-CoA ligases catalyze the ATP-dependent activation of fatty acids in a two-step reaction. The carboxylate substrate first reacts with ATP to form an acyl-adenylate intermediate, which then reacts with CoA to produce an acyl-CoA ester. This is a required step before free fatty acids can participate in most catabolic and anabolic reactions. Length = 448

>gnl|CDD|213290 cd05923, CBAL, 4-Chlorobenzoate-CoA ligase (CBAL)

 Score = 60.3 bits (146), Expect = 2e-09
 Identities = 54/187 (28%), Positives = 81/187 (43%), Gaps = 9/187 (4%)

Query: 385 LRLVISGGAPLSTEVEEFLRVTCCAFLVQGYGLTETCGPTTVCFPDEMCMVGTAGPVSVY 444
           L  V   GA +   V E +        V  YG TE      +  P      GT      +
Sbjct: 271 LEHVTFAGATMPDAVLERVNQHLPGEKVNIYGTTEAMNSLYMRDPRT----GTEMRPGFF 326

Query: 445 SELRLEEVPEMGYSPLDDPPCGEVCV-RGKTLFSGYYKNPDLTRESIIDGWFHTGDIGQI 503
           SE+R+  +       L +   GE+ V      F+GY   P  T E + DGW+ T D+  +
Sbjct: 327 SEVRIVRIGGSPDEALPNGEEGELVVAAADATFTGYLNQPQATAEKLQDGWYRTSDVAVV 386

Query: 504 LPNGVVKIIDRKKNLIKISQGEYVALEYLENVYCVAPIIEDIWVYG---DSLKSMLVAVV 560
            P+G V+I+ R  ++I IS GE +    +E V   AP + ++ V G   +     + A V
Sbjct: 387 DPSGTVRILGRVDDMI-ISGGENIHPSEVERVLGRAPGVTEVVVIGLPDERWGQSVTACV 445

Query: 561 VPCEEDT 567
           VP E +T
Sbjct: 446 VPREGET 452

CBAL catalyzes the conversion of 4-chlorobenzoate (4-CB) to 4-chlorobenzoyl-coenzyme A (4-CB-CoA) by the two-step adenylation and thioester-forming reactions. 4-Chlorobenzoate (4-CBA) is an environmental pollutant derived from microbial breakdown of aromatic pollutants, such as polychlorinated biphenyls (PCBs), DDT, and certain herbicides. The 4-CBA degrading pathway converts 4-CBA to the metabolite 4-hydroxybezoate (4-HBA), allowing some soil-dwelling microbes to utilize 4-CBA as an alternate carbon source. This pathway consists of three chemical steps catalyzed by 4-CBA-CoA ligase, 4-CBA-CoA dehalogenase, and 4HBA-CoA thioesterase in sequential reactions. Length = 495

>gnl|CDD|233807 TIGR02275, DHB_AMP_lig, 2,3-dihydroxybenzoate-AMP ligase

 Score = 58.6 bits (142), Expect = 6e-09
 Identities = 46/166 (27%), Positives = 77/166 (46%), Gaps = 14/166 (8%)

Query: 385 LRLVISGGAPLSTEVEEFLRVTCCAFLVQGYGLTETCGPTTVCF-----PDEMCMVGTAG 439
           L+L+  GGA  S      +       L Q +G+ E      V +     P E+       
Sbjct: 300 LKLLQVGGAKFSAAAARRVPAVFGCQLQQVFGMAEG----LVNYTRLDDPAEIIFTTQGR 355

Query: 440 PVSVYSELRLEEVPEMGYSPLDDPPCGEVCVRGKTLFSGYYKNPDLTRESI-IDGWFHTG 498
           P+S   E+R+  V + G +P+     G +  RG   F GYYK P+    +   +G+++TG
Sbjct: 356 PMSPDDEVRV--VDDHG-NPVAPGETGMLLTRGPYTFRGYYKAPEHNAAAFDAEGFYYTG 412

Query: 499 DIGQILPNGVVKIIDRKKNLIKISQGEYVALEYLENVYCVAPIIED 544
           D+ ++ P G + ++ R K+ I    GE +A E +EN+    P + D
Sbjct: 413 DLVRLTPEGYIVVVGRAKDQIN-RGGEKIAAEEIENLLLAHPAVHD 457

Proteins in this family belong to the AMP-binding enzyme family (pfam00501). Members activate 2,3-dihydroxybenzoate (DHB) by ligation of AMP from ATP with the release of pyrophosphate; many are involved in synthesis of siderophores such as enterobactin, vibriobactin, vulnibactin, etc. The most closely related proteine believed to differ in function activates salicylate rather than DHB [Transport and binding proteins, Cations and iron carrying compounds]. Length = 526

>gnl|CDD|213322 cd12114, A_NRPS_TlmIV_like, The adenylation domain of nonribosomal peptide synthetases (NRPS), including Streptoalloteichus tallysomycin biosynthesis genes

 Score = 58.0 bits (141), Expect = 9e-09
 Identities = 33/123 (26%), Positives = 53/123 (43%), Gaps = 8/123 (6%)

Query: 466 GEVCVRGKTLFSGYYKNPDLTRESIIDG-----WFHTGDIGQILPNGVVKIIDRKKNLIK 520
           GE+ + G  +  GY+ +P+LT E  I        + TGD+G+  P+G ++ + R  + +K
Sbjct: 327 GELYIGGVGVALGYWGDPELTAERFITHRTGERLYRTGDLGRYRPDGTIEFLGRADHQVK 386

Query: 521 ISQGEYVALEYLENVYCVAPIIED--IWVYGDSLKSMLVAVVVPCEEDTKKWAYSNGHAG 578
           I  G  V L  +E      P ++   + V GD     L A VV  +      A       
Sbjct: 387 IR-GYRVELGEIEAALARHPGVQRAVVVVVGDGGAKALAAFVVAEDGAAVDAAVLRAALA 445

Query: 579 SFL 581
             L
Sbjct: 446 ELL 448

The adenylation (A) domain of NRPS recognizes a specific amino acid or hydroxy acid and activates it as an (amino) acyl adenylate by hydrolysis of ATP. The activated acyl moiety then forms a thioester to the enzyme-bound cofactor phosphopantetheine of a peptidyl carrier protein domain. NRPSs are large multifunctional enzymes which synthesize many therapeutically useful peptides in bacteria and fungi via a template-directed, nucleic acid independent nonribosomal mechanism. These natural products include antibiotics, immunosuppressants, plant and animal toxins, and enzyme inhibitors. NRPS has a distinct modular structure in which each module is responsible for the recognition, activation, and in some cases, modification of a single amino acid residue of the final peptide product. The modules can be subdivided into domains that catalyze specific biochemical reactions. This family includes the TLM biosynthetic gene cluster from Streptoalloteichus that consists of nine NRPS genes; the N-terminal module of TlmVI (NRPS-5) and the starter module of BlmVI (NRPS-5) are comprised of the acyl CoA ligase (AL) and acyl carrier protein (ACP)-like domains, which are thought to be involved in the biosynthesis of the beta-aminoalaninamide moiety. Length = 476

>gnl|CDD|236100 PRK07798, PRK07798, acyl-CoA synthetase; Validated

 Score = 58.0 bits (141), Expect = 9e-09
 Identities = 47/196 (23%), Positives = 80/196 (40%), Gaps = 26/196 (13%)

Query: 78  TYKEVYEEVLQIVSALRASGAEPGCRVGIYGANCPQWVEAMEACNALSLICVPLYDTLGP 137
           TY E+ E   ++   L A G  PG  VGIY  N  ++VEAM        + V +      
Sbjct: 30  TYAELEERANRLAHYLIAQGLGPGDHVGIYARNRIEYVEAMLGAFKARAVPVNVNYRYVE 89

Query: 138 GAVNFILDHAEIDFVFVQDK---KVKELLSPDCRSAQRLRVMVCFTSLTAEQKEMAVQTG 194
             + ++LD ++   +  + +   +V E+L        +LR +V     +       +  G
Sbjct: 90  DELRYLLDDSDAVALVYEREFAPRVAEVLP----RLPKLRTLVVVEDGSGN----DLLPG 141

Query: 195 IKPYSWDEFLHLGKVNEMEILPPQPFNICTIMYTSGTSGDPKGVVLTHETIATFVSGVDL 254
              Y  ++ L  G   E +     P ++  ++YT GT+G PKGV+   E         D+
Sbjct: 142 AVDY--EDALAAGS-PERDFGERSPDDL-YLLYTGGTTGMPKGVMWRQE---------DI 188

Query: 255 FLDQFE--DKMTVDDV 268
           F       D  T + +
Sbjct: 189 FRVLLGGRDFATGEPI 204

Length = 533

>gnl|CDD|235731 PRK06188, PRK06188, acyl-CoA synthetase; Validated

 Score = 57.7 bits (140), Expect = 1e-08
 Identities = 45/186 (24%), Positives = 74/186 (39%), Gaps = 43/186 (23%)

Query: 78  TYKEVYEEVLQIVSALRASGAEPGCRVGIYGANCPQWVEAMEACNALSLICVPLYDTLGP 137
           TY ++ + + + + A  A G   G  V +   N P+ + A+ A     L    L+    P
Sbjct: 39  TYGQLADRISRYIQAFEALGLGTGDAVALLSLNRPEVLMAIGAAQLAGLRRTALH----P 94

Query: 138 -GAVNFILDHAEIDFVFVQDKKVKELLSPDCRSAQRLRVMVCFTSLTAEQKEMAVQTGIK 196
            G+++   DHA +    ++D  +  L+       +R   ++            A    +K
Sbjct: 95  LGSLD---DHAYV----LEDAGISTLIVDPAPFVERALALL------------ARVPSLK 135

Query: 197 PYSWDEFLHLGKVNEMEIL-------PPQPF-------NICTIMYTSGTSGDPKGVVLTH 242
                  L LG V +   L        P P        +I  + YT GT+G PKGV+ TH
Sbjct: 136 -----HVLTLGPVPDGVDLLAAAAKFGPAPLVAAALPPDIAGLAYTGGTTGKPKGVMGTH 190

Query: 243 ETIATF 248
            +IAT 
Sbjct: 191 RSIATM 196

Length = 524

>gnl|CDD|213322 cd12114, A_NRPS_TlmIV_like, The adenylation domain of nonribosomal peptide synthetases (NRPS), including Streptoalloteichus tallysomycin biosynthesis genes

 Score = 57.6 bits (140), Expect = 1e-08
 Identities = 34/165 (20%), Positives = 54/165 (32%), Gaps = 30/165 (18%)

Query: 78  TYKEVYEEVLQIVSALRASGAEPGCRVGIYGANCPQWVEAMEACNALSLICVPLYDTLGP 137
           TY E+      I +ALRA+G  PG  V +      + + A+          VP+      
Sbjct: 14  TYGELARRANAIAAALRAAGVAPGDLVAVVMPKGWEQIVAVLGILLAGAAYVPIDPDQPA 73

Query: 138 GAVNFILDHAEIDFVFVQDKKVKELLSPDCRSAQRLRVMVCFTSLTAEQKEMAVQTGIKP 197
                IL  A    V       +         A  L V+                     
Sbjct: 74  ERRAAILARAGARAVLTDPGLAQP------EEAPDLLVVAD------------------- 108

Query: 198 YSWDEFLHLGKVNEMEILPPQPFNICTIMYTSGTSGDPKGVVLTH 242
              D                 P ++  +++TSG++G+PKGV++TH
Sbjct: 109 ---DAAAAESP--APPPPRVDPDDLAYVIFTSGSTGEPKGVMITH 148

The adenylation (A) domain of NRPS recognizes a specific amino acid or hydroxy acid and activates it as an (amino) acyl adenylate by hydrolysis of ATP. The activated acyl moiety then forms a thioester to the enzyme-bound cofactor phosphopantetheine of a peptidyl carrier protein domain. NRPSs are large multifunctional enzymes which synthesize many therapeutically useful peptides in bacteria and fungi via a template-directed, nucleic acid independent nonribosomal mechanism. These natural products include antibiotics, immunosuppressants, plant and animal toxins, and enzyme inhibitors. NRPS has a distinct modular structure in which each module is responsible for the recognition, activation, and in some cases, modification of a single amino acid residue of the final peptide product. The modules can be subdivided into domains that catalyze specific biochemical reactions. This family includes the TLM biosynthetic gene cluster from Streptoalloteichus that consists of nine NRPS genes; the N-terminal module of TlmVI (NRPS-5) and the starter module of BlmVI (NRPS-5) are comprised of the acyl CoA ligase (AL) and acyl carrier protein (ACP)-like domains, which are thought to be involved in the biosynthesis of the beta-aminoalaninamide moiety. Length = 476

>gnl|CDD|213283 cd05915, ttLC_FACS_like, Fatty acyl-CoA synthetases similar to LC-FACS from Thermus thermophiles

 Score = 57.1 bits (137), Expect = 2e-08
 Identities = 95/489 (19%), Positives = 152/489 (31%), Gaps = 87/489 (17%)

Query: 78  TYKEVYEEVLQIVSALRASGAEPGCRVGIYGANCPQWVEA-MEACNALSLICVPLYDTLG 136
           TY EVY+   +++  LRA G   G RV   G N  + +EA        +++       L 
Sbjct: 26  TYAEVYQRARRLMGGLRALGVGVGDRVATLGFNHFRHLEAYFAVPGMGAVLHT-ANPRLS 84

Query: 137 PGAVNFILDHAEIDFVFVQDKKVKELLSPDCRSAQRLRVMVCFTSLTAEQKEMAVQTGIK 196
           P  + +IL+HAE   +         LL            +          +        K
Sbjct: 85  PKEIAYILNHAEDKVLLFD----PNLLPL---VEAIRGELKTVQHFVVMDE--------K 129

Query: 197 PYSWDEFLHLGKVNEMEILPPQPFNICTIMYTSGTSGDPKGVVLTHETIATFVSGVDLFL 256
                         E + +       C + YT+GT+G PKGVV +H  +        L  
Sbjct: 130 APEGYLAYEEALGEEADPVRVPERAACGMAYTTGTTGLPKGVVYSHRALVLHSLAASLVD 189

Query: 257 DQFEDKMTVDDVYLSFLPLAHILDRVIEEYFFRRGASVGYYHGDLNALR---------DD 307
                +     V L  +P+ H+         +    +                     + 
Sbjct: 190 GTALSEKD---VVLPVVPMFHVNAWC---LPY----AATLVGAKQVLPGPRLDPASLVEL 239

Query: 308 LMELKPTLLAGVPRVFEKI---HEGIKKALEELRPLRRRIFDALYKYKLAWMNMGYKQRE 364
                 T  AGVP V+  +    E                     K     +  G     
Sbjct: 240 FDGEGVTFTAGVPTVWLALADYLESTGHR---------------LKTLRRLVVGG----- 279

Query: 365 ASPLADLLAFRKVKARLGGRLRLVISGGAPLSTEVEEFLRVTCCAFLVQGYGLTETC--G 422
           ++    L+A  +        + +    G    TE                  +       
Sbjct: 280 SAAPRSLIARFER-----MGVEVRQGYGL---TET---------------SPVVVQNFVK 316

Query: 423 PTTVCFPDEMCM-VGTAGPVSVYSELRLEEVPEMGYSPLDDPPCGEVCVRGKTLFSGYYK 481
                  +E  + +     + +          E    P D    GEV ++G  +  GYY 
Sbjct: 317 SHLESLSEEEKLTLKAKTGLPIPLVRLRVADEEGRPVPKDGKALGEVQLKGPWITGGYYG 376

Query: 482 NPDLTR-ESIIDGWFHTGDIGQILPNGVVKIIDRKKNLIKISQGEYVALEYLENVYCVAP 540
           N + TR     DG+F TGDI      G V+I DR K+LIK   GE+++   LEN     P
Sbjct: 377 NEEATRSALTPDGFFRTGDIAVWDEEGYVEIKDRLKDLIKSG-GEWISSVDLENALMGHP 435

Query: 541 IIEDIWVYG 549
            +++  V  
Sbjct: 436 KVKEAAVVA 444

This family includes fatty acyl-CoA synthetases that can activate medium-chain to long-chain fatty acids. They catalyze the ATP-dependent acylation of fatty acids in a two-step reaction. The carboxylate substrate first reacts with ATP to form an acyl-adenylate intermediate, which then reacts with CoA to produce an acyl-CoA ester. Fatty acyl-CoA synthetases are responsible for fatty acid degradation as well as physiological regulation of cellular functions via the production of fatty acyl-CoA esters. The fatty acyl-CoA synthetase from Thermus thermophiles in this family has been shown to catalyze the long-chain fatty acid, myristoyl acid, while another member in this family, the AlkK protein identified in Pseudomonas oleovorans, targets medium chain fatty acids. This family also includes an uncharacterized subgroup of FACS. Length = 509

>gnl|CDD|237054 PRK12316, PRK12316, peptide synthase; Provisional

 Score = 57.3 bits (138), Expect = 2e-08
 Identities = 106/468 (22%), Positives = 166/468 (35%), Gaps = 112/468 (23%)

Query: 78   TYKEVYEEVLQIVSALRASGAEPGCRVGIYGANCPQWVEAMEACNALSLICVPLYDTLGP 137
            TY E+     ++  AL A G  P   VGI          AME   +  ++ V L   L  
Sbjct: 4578 TYAELNRRANRLAHALIARGVGPEVLVGI----------AME--RSAEMM-VGLLAVLKA 4624

Query: 138  GAVNFILDHAEIDF------VFVQDKKVKELLSPDCRSAQRLRVMVCFTSLTAEQKEMAV 191
            G     LD    ++        ++D     LL+      QRL +     SL  ++ E   
Sbjct: 4625 GGAYVPLD---PEYPRERLAYMMEDSGAALLLT-QSHLLQRLPIPDGLASLALDRDE--- 4677

Query: 192  QTGIKPYSWDEFLHLGKVNEMEILPPQPFNICTIMYTSGTSGDPKGVVLTHETIATFVSG 251
                    W+     G       +   P N+  ++YTSG++G PKGV ++H +    V+ 
Sbjct: 4678 -------DWE-----GFPAHDPAVRLHPDNLAYVIYTSGSTGRPKGVAVSHGS---LVNH 4722

Query: 252  VDLFLDQFEDKMTVDDVYLSFLPLAHILDRVIEEYF--FRRGASVGYYHGDLNALRDDLM 309
            +    +++E  +T DD  L F+  +   D   E  +     GASV         +RDD +
Sbjct: 4723 LHATGERYE--LTPDDRVLQFMSFS--FDGSHEGLYHPLINGASV--------VIRDDSL 4770

Query: 310  ELKPTLLAGVPRVFEKIHEGIKKALEELRPLRRRIFDALYKYKLAWMNMGYKQREASPLA 369
                 L A       +IHE           +   +F  +Y  +LA          A    
Sbjct: 4771 WDPERLYA-------EIHE---------HRVTVLVFPPVYLQQLA--------EHAERDG 4806

Query: 370  DLLAFRKVKARLGGRLRLVISGGAPLSTEVEEFLRVTCCAFLVQGYGLTET--------C 421
            +  + R               G A      +   R     +L  GYG TET         
Sbjct: 4807 EPPSLRVY----------CFGGEAVAQASYDLAWRALKPVYLFNGYGPTETTVTVLLWKA 4856

Query: 422  GPTTVCFPDEMCMVGTAGPVSVYSELRLEEVPEMGYSPLDDPPCGEVCVRGKTLFSGYYK 481
                 C    M +    G  S Y       V +   +PL     GE+ + G+ +  GY +
Sbjct: 4857 RDGDACGAAYMPIGTPLGNRSGY-------VLDGQLNPLPVGVAGELYLGGEGVARGYLE 4909

Query: 482  NPDLTRESIIDGWF--------HTGDIGQILPNGVVKIIDRKKNLIKI 521
             P LT E  +   F         TGD+ +   +GV+  + R  + +KI
Sbjct: 4910 RPALTAERFVPDPFGAPGGRLYRTGDLARYRADGVIDYLGRVDHQVKI 4957

Length = 5163

>gnl|CDD|180988 PRK07470, PRK07470, acyl-CoA synthetase; Validated

 Score = 56.6 bits (137), Expect = 3e-08
 Identities = 55/222 (24%), Positives = 81/222 (36%), Gaps = 49/222 (22%)

Query: 72  GPYVWKTYKEVYEEVLQIVSALRASGAEPGCRVGIYGANCPQWVEAMEACNALSLICVPL 131
           G   W T++E+   V  + +AL A G   G R+ ++  NC Q  E+M A   L  + VP 
Sbjct: 29  GDRSW-TWREIDARVDALAAALAARGVRKGDRILVHSRNCNQMFESMFAAFRLGAVWVP- 86

Query: 132 YDTLGPGAVNFILDHAEIDFVFVQDKKVKELLSPDCRSAQRLRVMVCFTSL--------- 182
                    NF     E+ ++                 A   R M+C             
Sbjct: 87  --------TNFRQTPDEVAYL---------------AEASGARAMICHADFPEHAAAVRA 123

Query: 183 TAEQKEMAVQTGIKPY--SWDEFL--HLG-KVNEMEILPPQPFNICTIMYTSGTSGDPKG 237
            +      V  G       ++  +  HLG +V    +    P   C   +TSGT+G PK 
Sbjct: 124 ASPDLTHVVAIGGARAGLDYEALVARHLGARVANAAVDHDDP---CWFFFTSGTTGRPKA 180

Query: 238 VVLTHETIATFVSG--VDLFLDQFEDKMTVDDVYLSFLPLAH 277
            VLTH  +A  ++    DL         T  D  L   PL+H
Sbjct: 181 AVLTHGQMAFVITNHLADLMPG-----TTEQDASLVVAPLSH 217

Length = 528

>gnl|CDD|237054 PRK12316, PRK12316, peptide synthase; Provisional

 Score = 56.5 bits (136), Expect = 4e-08
 Identities = 78/361 (21%), Positives = 129/361 (35%), Gaps = 69/361 (19%)

Query: 219  PFNICTIMYTSGTSGDPKGVVLTHETIATFVSGVDLFLDQFEDKMTVDDVYLSFLPLAHI 278
            P N+  ++YTSG++G PKGV + H  ++  +  +          + V D  L F   +  
Sbjct: 3195 PENLAYVIYTSGSTGKPKGVGIRHSALSNHLCWMQQAYG-----LGVGDRVLQFTTFS-- 3247

Query: 279  LDRVIEEYF--FRRGASVGYYHGDLNALRDDLMELKPTLLAGVPRVFEKIHEGIKKALEE 336
             D  +EE F     GA V         L        P LL  +                 
Sbjct: 3248 FDVFVEELFWPLMSGARV--------VLAGPEDWRDPALLVEL----------------- 3282

Query: 337  LRPLRRRIFDALYKYKLAWMNMGYKQREASPLADLLAFRKVKARLGGRLRLVISGGAPLS 396
               +     D L+ Y                        +  A     L+ ++ GG  L 
Sbjct: 3283 ---INSEGVDVLHAYPSMLQA---------------FLEEEDAHRCTSLKRIVCGGEALP 3324

Query: 397  TEVEEFLRVTCCAFLVQGYGLTETCGPTTVCFPDEMCMVGTAGPVSVYSEL--RLEEVPE 454
             ++++  +V     L   YG TE     T+      C+      V +   +  R   + +
Sbjct: 3325 ADLQQ--QVFAGLPLYNLYGPTEA----TITVTHWQCVEEGKDAVPIGRPIANRACYILD 3378

Query: 455  MGYSPLDDPPCGEVCVRGKTLFSGYYKNPDLTRESIIDGWF-------HTGDIGQILPNG 507
                P+     GE+ + G+ L  GY+  P LT E  +   F        TGD+ +   +G
Sbjct: 3379 GSLEPVPVGALGELYLGGEGLARGYHNRPGLTAERFVPDPFVPGERLYRTGDLARYRADG 3438

Query: 508  VVKIIDRKKNLIKISQGEYVALEYLENVYCVAPIIEDIWVYGDSLKSMLVAVVVPCEEDT 567
            V++ I R  + +KI +G  + L  +E      P + +  V     +  LVA VVP +E  
Sbjct: 3439 VIEYIGRVDHQVKI-RGFRIELGEIEARLLEHPWVREAVVLAVDGRQ-LVAYVVPEDEAG 3496

Query: 568  K 568
             
Sbjct: 3497 D 3497

Length = 5163

>gnl|CDD|236363 PRK09029, PRK09029, O-succinylbenzoic acid--CoA ligase; Provisional

 Score = 55.6 bits (135), Expect = 4e-08
 Identities = 50/160 (31%), Positives = 73/160 (45%), Gaps = 38/160 (23%)

Query: 385 LRLVISGGAPLSTEVEEFLR---VTC-CAFLVQGYGLTETCGPTTVCFP--DEMCMVGTA 438
           L+ V+ GGA +  E+ E      + C C     GYGLTE    +TVC    D +  VG+ 
Sbjct: 242 LKAVLLGGAAIPVELTEQAEQQGIRCWC-----GYGLTEMA--STVCAKRADGLAGVGSP 294

Query: 439 GPVSVYSELRLEEVPEMGYSPLDDPPCGEVCVRGKTLFSGYYKNP---DLTRESIIDGWF 495
            P     E++L +              GE+ +RG +L  GY++      L  +   +GWF
Sbjct: 295 LP---GREVKLVD--------------GEIWLRGASLALGYWRQGQLVPLVND---EGWF 334

Query: 496 HTGDIGQILPNGVVKIIDRKKNLIKISQGEYVALEYLENV 535
            T D G+   NG + I+ R  NL   S GE +  E +E V
Sbjct: 335 ATRDRGEWQ-NGELTILGRLDNLF-FSGGEGIQPEEIERV 372

Length = 458

>gnl|CDD|213325 cd12117, A_NRPS_Srf_like, The adenylation domain of nonribosomal peptide synthetases (NRPS), including Bacillus subtilis termination module Surfactin (SrfA-C)

 Score = 55.6 bits (135), Expect = 5e-08
 Identities = 52/208 (25%), Positives = 77/208 (37%), Gaps = 40/208 (19%)

Query: 385 LRLVISGGAPLSTE-VEEFLRVTCCAFLVQGYGLTETCGPTT--VCFP-DEMCMVGTAGP 440
           LR ++ GG  LS   V   L       L+ GYG TE    TT   C     +     + P
Sbjct: 242 LRQLLVGGDVLSPAHVRRVLAACPGLRLINGYGPTEN---TTFSTCHVITRLDEAADSIP 298

Query: 441 V-------SVY---SELRLEEVPEMGYSPLDDPPCGEVCVRGKTLFSGYYKNPDLTRESI 490
           +       +VY    E +   +   G          E+ V G  L  GY   P+LT E  
Sbjct: 299 IGRPIPNTTVYILDEEGQPVPIGVPG----------ELYVGGDGLALGYLNRPELTAERF 348

Query: 491 ID-----G--WFHTGDIGQILPNGVVKIIDRKKNLIKISQGEYVALEYLENVYCVAPIIE 543
           +      G   + TGD+ +  P+G ++ + R    +KI +G  + L  +E      P + 
Sbjct: 349 VPDPFGPGERLYRTGDLARWRPDGNIEFLGRIDRQVKI-RGFRIELGEIEQALLQHPGVR 407

Query: 544 DIWV----YGDSLKSMLVAVVVPCEEDT 567
           +  V         K  LVA VV      
Sbjct: 408 EAAVLVREDAAGDKR-LVAYVVARGALD 434

The adenylation (A) domain of NRPS recognizes a specific amino acid or hydroxy acid and activates it as an (amino) acyl adenylate by hydrolysis of ATP. The activated acyl moiety then forms a thioester to the enzyme-bound cofactor phosphopantetheine of a peptidyl carrier protein domain. NRPSs are large multifunctional enzymes which synthesize many therapeutically useful peptides in bacteria and fungi via a template-directed, nucleic acid independent nonribosomal mechanism. These natural products include antibiotics, immunosuppressants, plant and animal toxins, and enzyme inhibitors. NRPS has a distinct modular structure in which each module is responsible for the recognition, activation, and, in some cases, modification of a single amino acid residue of the final peptide product. The modules can be subdivided into domains that catalyze specific biochemical reactions. This family includes the adenylation domain of the Bacillus subtilis termination module (Surfactin domain, SrfA-C) which recognizes a specific amino acid building block, which is then activated and transferred to the terminal thiol of the 4'-phosphopantetheine (Ppan) arm of the downstream peptidyl carrier protein (PCP) domain. Length = 474

>gnl|CDD|237054 PRK12316, PRK12316, peptide synthase; Provisional

 Score = 56.5 bits (136), Expect = 5e-08
 Identities = 70/317 (22%), Positives = 116/317 (36%), Gaps = 66/317 (20%)

Query: 219  PFNICTIMYTSGTSGDPKGVVLTHETIATFVSGVDLFLDQFEDKMTVDDVYLSFLPLAHI 278
              N+  ++YTSG++G PKGV ++H  +                +++  D  L F+  +  
Sbjct: 2145 GENLAYVIYTSGSTGLPKGVAVSHGALVAHCQAA-----GERYELSPADCELQFMSFS-- 2197

Query: 279  LDRVIEEYF--FRRGASVGYYHGDLNALRDDLMELKPTLLAGVPRVFEKIHEGIKKALEE 336
             D   E++F     GA V         +RDD +     L   + R       G+      
Sbjct: 2198 FDGAHEQWFHPLLNGARV--------LIRDDELWDPEQLYDEMER------HGVTIL--- 2240

Query: 337  LRPLRRRIFDALYKYKLAWMNMGYKQREASPLADLLAFRKVKARLGGRLRLVISGGAPLS 396
                    F  +Y  +LA     + +R+  P A               +R+   GG  + 
Sbjct: 2241 -------DFPPVYLQQLA----EHAERDGRPPA---------------VRVYCFGGEAVP 2274

Query: 397  TE-VEEFLRVTCCAFLVQGYGLTETCGPTTV--CFPDEMCMVGTAG-PVSVYSELRLEEV 452
               +          +L  GYG TE      +  C P + C  G A  P+      R   +
Sbjct: 2275 AASLRLAWEALRPVYLFNGYGPTEAVVTPLLWKCRPQDPC--GAAYVPIGRALGNRRAYI 2332

Query: 453  PEMGYSPLDDPPCGEVCVRGKTLFSGYYKNPDLTRESIIDGWF--------HTGDIGQIL 504
             +   + L     GE+ + G+ L  GY   P LT E  +   F         TGD+ +  
Sbjct: 2333 LDADLNLLAPGMAGELYLGGEGLARGYLNRPGLTAERFVPDPFSASGERLYRTGDLARYR 2392

Query: 505  PNGVVKIIDRKKNLIKI 521
             +GVV+ + R  + +KI
Sbjct: 2393 ADGVVEYLGRIDHQVKI 2409

Length = 5163

>gnl|CDD|223952 COG1021, EntE, Peptide arylation enzymes [Secondary metabolites biosynthesis, transport, and catabolism]

 Score = 55.9 bits (135), Expect = 5e-08
 Identities = 56/196 (28%), Positives = 90/196 (45%), Gaps = 23/196 (11%)

Query: 385 LRLVISGGAPLSTEVEEFLRVTCCAFLVQGYGLTETCGPTTVCF-----PDEMCMVGTAG 439
           LRL+  GGA LS  +   +       L Q +G+ E      V +     P E+ ++ T G
Sbjct: 307 LRLLQVGGARLSATLARRVPAVLGCQLQQVFGMAEG----LVNYTRLDDPPEI-IIHTQG 361

Query: 440 -PVSVYSELRLEEVPEMGYSPLDDPPCGEVCVRGKTLFSGYYKNPDLTRESI-IDGWFHT 497
            P+S   E+R+  V   G +P+     GE+  RG     GYY+ P+    +   DG++ +
Sbjct: 362 RPLSPDDEVRV--VDADG-NPVAPGEVGELLTRGPYTIRGYYRAPEHNARAFDADGFYRS 418

Query: 498 GDIGQILPNGVVKIIDRKKNLIKISQGEYVALEYLENVYCVAPIIEDIWVYG--DSL--- 552
           GD+ +  P+G + +  R K+ I    GE +A E +EN+    P + D  +    D L   
Sbjct: 419 GDLVRRDPDGYLVVEGRVKDQIN-RGGEKIAAEEVENLLLRHPAVHDAALVAMPDELLGE 477

Query: 553 KSMLVAVVVPCEEDTK 568
           KS   A +V  E   +
Sbjct: 478 KS--CAFIVVKEPPLR 491

Length = 542

>gnl|CDD|180167 PRK05620, PRK05620, long-chain-fatty-acid--CoA ligase; Validated

 Score = 55.6 bits (134), Expect = 6e-08
 Identities = 53/205 (25%), Positives = 89/205 (43%), Gaps = 10/205 (4%)

Query: 78  TYKEVYEEVLQIVSALRAS-GAEPGCRVGIYGANCPQWVEAMEACNALSLICVPLYDTLG 136
           T+  +      +  AL    G     RVG    NC + +E + A   +  +  PL   L 
Sbjct: 40  TFAAIGARAAALAHALHDELGITGDQRVGSMMYNCAEHLEVLFAVACMGAVFNPLNKQLM 99

Query: 137 PGAVNFILDHAEIDFVFVQDKKVKELLSPDCRSAQRLRVMVCFTSLTAEQKEMAVQTGIK 196
              +  I++HAE D V V D ++ E L    +    +R +V      A+     +  GIK
Sbjct: 100 NDQIVHIINHAE-DEVIVADPRLAEQLGEILKECPCVRAVVFIGPSDADSAAAHMPEGIK 158

Query: 197 PYSWDEFLHLGKVNEMEILPPQP-FNICTIMYTSGTSGDPKGVVLTHETIATFVSGVDLF 255
            YS++  L  G+    +  P         I Y++GT+G PKGVV +H   + ++  + L 
Sbjct: 159 VYSYEALLD-GRSTVYD-WPELDETTAAAICYSTGTTGAPKGVVYSHR--SLYLQSLSLR 214

Query: 256 -LDQFEDKMTVDDVYLSFLPLAHIL 279
             D     +T  + +L  +P+ H+L
Sbjct: 215 TTDSL--AVTHGESFLCCVPIYHVL 237

Length = 576

>gnl|CDD|237144 PRK12582, PRK12582, acyl-CoA synthetase; Provisional

 Score = 55.1 bits (133), Expect = 9e-08
 Identities = 83/351 (23%), Positives = 134/351 (38%), Gaps = 87/351 (24%)

Query: 225 IMYTSGTSGDPKGVVLTHETIATFVSGVDLFLDQFEDKMTVDDVYLSFLPLAHI------ 278
            ++TSG++G PK V+ T   +   ++  +       +      V L ++P  H       
Sbjct: 225 YLFTSGSTGMPKAVINTQRMMCANIAMQEQLRP--REPDPPPPVSLDWMPWNHTMGGNAN 282

Query: 279 LDRVIEE---YFFRRGASV-GYYHGDLNALRDDLMELKPTLLAGVPRVFEKIHEGIKKAL 334
            + ++      +   G  + G +   +  LR    E+ PT+   VP  +  + E    A+
Sbjct: 283 FNGLLWGGGTLYIDDGKPLPGMFEETIRNLR----EISPTVYGNVPAGYAMLAE----AM 334

Query: 335 EELRPLRRRIFDALYKYKLAWMNMGYKQREASPLADLLAFRKVKARLGGRLRLVISGGAP 394
           E+   LRR  F                                       LRL+  GGA 
Sbjct: 335 EKDDALRRSFFK-------------------------------------NLRLMAYGGAT 357

Query: 395 LSTEVEEFLRVTCCA------FLVQGYGLTETCGPTTVCFPDEMCMVGTAGPVSVYSELR 448
           LS ++ E ++               GYG TET  PTT     +   VG  G      EL+
Sbjct: 358 LSDDLYERMQALAVRTTGHRIPFYTGYGATET-APTTTGTHWDTERVGLIGLPLPGVELK 416

Query: 449 LEEVPEMGYSPLDDPPCG---EVCVRGKTLFSGYYKNPDLTRESII-DGWFHTGDIGQIL 504
           L              P G   EV V+G  +  GY+K+P+LT  +   +G++  GD  + +
Sbjct: 417 L-------------APVGDKYEVRVKGPNVTPGYHKDPELTAAAFDEEGFYRLGDAARFV 463

Query: 505 -PNGVVK--IID-RKKNLIKISQGEYVALEYL--ENVYCVAPIIEDIWVYG 549
            P+   K  I D R     K+S G +V++  L  + V   +P+I D  V G
Sbjct: 464 DPDDPEKGLIFDGRVAEDFKLSTGTWVSVGTLRPDAVAACSPVIHDAVVAG 514

Length = 624

>gnl|CDD|213317 cd05970, MACS_AAE_MA_like, Medium-chain acyl-CoA synthetase (MACS) of AAE_MA like

 Score = 54.7 bits (132), Expect = 1e-07
 Identities = 47/148 (31%), Positives = 70/148 (47%), Gaps = 19/148 (12%)

Query: 385 LRLVISGGAPLSTEV-EEFLRVTCCAFLVQGYGLTETCGPTTVCFPDEMCMV---GTAG- 439
           LR   + G PL+ EV   F   T    L++G+G TET    T+       M    G+ G 
Sbjct: 303 LRYCTTAGEPLNPEVFNTFKEKTGIK-LMEGFGQTET----TLTIATFPWMEPKPGSMGK 357

Query: 440 PVSVYSELRLEEVPEMGYSPLDDPPCGEVCVR---GKT--LFSGYYKNPDLTRESIIDGW 494
           P   Y    ++ +   G    +    GE+ +R   GK   LF GYY++P+ T E   DG+
Sbjct: 358 PSPGYD---IDIIDPDG-KSCEVGEEGEIVIRTSDGKPLGLFMGYYRDPERTAEVWHDGY 413

Query: 495 FHTGDIGQILPNGVVKIIDRKKNLIKIS 522
           +HTGD   +  +G +  + R  +LIK S
Sbjct: 414 YHTGDTAWMDEDGYLWFVGRADDLIKSS 441

MACS catalyzes the two-step activation of medium chain fatty acids (containing 4-12 carbons). The carboxylate substrate first reacts with ATP to form an acyl-adenylate intermediate, which then reacts with CoA to produce an acyl-CoA ester. This family of MACS enzymes is found in archaea and bacteria. It is represented by the acyl-adenylating enzyme from Methanosarcina acetivorans (AAE_MA). AAE_MA is most active with propionate, butyrate, and the branched analogs: 2-methyl-propionate, butyrate, and pentanoate. The specific activity is weaker for smaller or larger acids. Length = 537

>gnl|CDD|213300 cd05934, FACL_DitJ_like, Uncharacterized subfamily of fatty acid CoA ligase (FACL)

 Score = 53.3 bits (129), Expect = 2e-07
 Identities = 27/77 (35%), Positives = 40/77 (51%)

Query: 78  TYKEVYEEVLQIVSALRASGAEPGCRVGIYGANCPQWVEAMEACNALSLICVPLYDTLGP 137
           TY E+ E V ++ + L A G  PG RV +   NCP+++ A  A N L  + VP+   L  
Sbjct: 5   TYAELAERVNRLAAGLLALGVRPGDRVALMLDNCPEFLRAWFALNKLGAVAVPINTALRG 64

Query: 138 GAVNFILDHAEIDFVFV 154
             +  ILDH+    + V
Sbjct: 65  EELAHILDHSGARLIVV 81

Fatty acyl-CoA ligases catalyze the ATP-dependent activation of fatty acids in a two-step reaction. The carboxylate substrate first reacts with ATP to form an acyl-adenylate intermediate, which then reacts with CoA to produce an acyl-CoA ester. This is a required step before free fatty acids can participate in most catabolic and anabolic reactions. Members of this family include DitJ from Pseudomonas and similar proteins. Length = 421

>gnl|CDD|215312 PLN02574, PLN02574, 4-coumarate--CoA ligase-like

 Score = 53.7 bits (129), Expect = 2e-07
 Identities = 27/62 (43%), Positives = 40/62 (64%), Gaps = 8/62 (12%)

Query: 221 NICTIMYTSGTSGDPKGVVLTHETIATFVSGVDLFL----DQFEDKMTVDDVYLSFLPLA 276
           ++  IMY+SGT+G  KGVVLTH      ++ V+LF+     Q+E   + D+VYL+ LP+ 
Sbjct: 199 DVAAIMYSSGTTGASKGVVLTHR---NLIAMVELFVRFEASQYEYPGS-DNVYLAALPMF 254

Query: 277 HI 278
           HI
Sbjct: 255 HI 256

Length = 560

>gnl|CDD|236403 PRK09192, PRK09192, acyl-CoA synthetase; Validated

 Score = 53.9 bits (130), Expect = 2e-07
 Identities = 26/64 (40%), Positives = 38/64 (59%), Gaps = 1/64 (1%)

Query: 458 SPLDDPPCGEVCVRGKTLFSGYYKNPDLTRESIIDGWFHTGDIGQILPNGVVKIIDRKKN 517
            PL +   G +CVRG +L SGY+++ +       DGW  TGD+G +L +G + I  R K+
Sbjct: 404 MPLPERVVGHICVRGPSLMSGYFRDEESQDVLAADGWLDTGDLGYLL-DGYLYITGRAKD 462

Query: 518 LIKI 521
           LI I
Sbjct: 463 LIII 466

Length = 579

>gnl|CDD|213316 cd05969, MACS_like_4, Uncharacterized subfamily of Acetyl-CoA synthetase like family (ACS)

 Score = 53.6 bits (129), Expect = 2e-07
 Identities = 91/459 (19%), Positives = 144/459 (31%), Gaps = 125/459 (27%)

Query: 78  TYKEVYEEVLQIVSALRASGAEPGCRVGIYGANCPQWVEAMEACNALSLICVPLYDTLGP 137
           +Y+E+ E   +  + L + G   G RV       P+   A      L  +  PL+   GP
Sbjct: 2   SYQELKELSARFANVLASLGVGKGERVFTLLPRSPELYVAALGTLKLGAVYGPLFSAFGP 61

Query: 138 GAVNFILDHAEIDFVFVQDKKVKELLSPDCRSAQRLRVMVCFTSLTAEQKEMAVQTGIKP 197
                I D  E+                        +V++    L    +    +     
Sbjct: 62  EP---IRDRLEL---------------------GEAKVLITTPEL---YERTDPEDPA-- 92

Query: 198 YSWDEFLHLGKVNEMEILPPQPFNICTIMYTSGTSGDPKGVVLTHETIATFVSGVDLFLD 257
                 LH                     +TSGT+G PKGV+  H  +    +     LD
Sbjct: 93  -----LLH---------------------FTSGTTGKPKGVLHVHRAVVAHYATARYVLD 126

Query: 258 QFEDKM---TVDD------VYLSFLPLAHILDRVIEEYFFRRGASVGYYHGDLNALR--D 306
              D +   T D        Y    PL +             G ++    G+ +A R   
Sbjct: 127 LRPDDVYWCTADPGWVTGTSYGIIAPLLN-------------GVTLVVDEGEFDAERWYG 173

Query: 307 DLMELKPTLLAGVPRVFEKIHEGIKKALEELRPLRRRIFDALYKYKLAWMNMGYKQREAS 366
            L E K T+    P                LR L R   +   +Y L             
Sbjct: 174 ILEEEKVTVWYTAPTA--------------LRMLMRAGPELAARYDL------------- 206

Query: 367 PLADLLAFRKVKARLGGRLRLVISGGAPLSTEVEEFLRVTCCAFLVQGYGLTETCGPTTV 426
                             LR + S G PL+ EV  +        +   +  TET      
Sbjct: 207 ----------------SSLRHIASVGEPLNPEVVVWGEKVLGMPIHDTWWQTETGAIMIA 250

Query: 427 CFPDEMCMVGTAGPVSVYSELRLEEVPEMGYSPLDDP-PCGEVCVRG--KTLFSGYYKNP 483
            +P      G+ G      E  + E    G +P+  P   GE+ ++    ++F GY  N 
Sbjct: 251 NYPGIPVKPGSMGRPLPGIEAAVIERDGDGLTPVTGPGQVGELALKPGWPSMFRGYLGNE 310

Query: 484 DLTRESIIDGWFHTGDIGQILPNGVVKIIDRKKNLIKIS 522
           +    S +DGW+ TGD+     +G    + R  ++IK +
Sbjct: 311 ERYASSFVDGWYLTGDLAYRDEDGYFWFVGRADDVIKTA 349

This family is most similar to acetyl-CoA synthetase. Acetyl-CoA synthetase (ACS) catalyzes the formation of acetyl-CoA from acetate, CoA, and ATP. Synthesis of acetyl-CoA is carried out in a two-step reaction. In the first step, the enzyme catalyzes the synthesis of acetyl-AMP intermediate from acetate and ATP. In the second step, acetyl-AMP reacts with CoA to produce acetyl-CoA. This enzyme is only present in bacteria. Length = 443

>gnl|CDD|180289 PRK05851, PRK05851, long-chain-fatty-acid--[acyl-carrier-protein] ligase; Validated

 Score = 53.2 bits (128), Expect = 3e-07
 Identities = 41/158 (25%), Positives = 66/158 (41%), Gaps = 23/158 (14%)

Query: 383 GRLRLVISGGAPLSTE-VEEFLRVTC-----CAFLVQGYGLTETCGPTTVCFP------D 430
           G LR+ ++GG P+  +  E F                 YGL E+    TV  P      D
Sbjct: 272 GALRVALNGGEPVDCDGFERFATAMAPFGFDAGAAAPSYGLAESTCAVTVPVPGIGLRVD 331

Query: 431 EMCMVGTAGP--VSVYSE----LRLEEVPEMGYSPLDDPPCGEVCVRGKTLFSGYYKNPD 484
           E+     +G    +V       + +   P  G + +     GE+ +RG ++ SGY     
Sbjct: 332 EVTTDDGSGARRHAVLGNPIPGMEVRISPGDGAAGVAGREIGEIEIRGASMMSGYLGQAP 391

Query: 485 LTRESIIDGWFHTGDIGQILPNGVVKIIDRKKNLIKIS 522
           +      D WF TGD+G ++  G+V +  R K LI ++
Sbjct: 392 IDP----DDWFPTGDLGYLVDGGLV-VCGRAKELITVA 424

Length = 525

>gnl|CDD|181644 PRK09088, PRK09088, acyl-CoA synthetase; Validated

 Score = 52.5 bits (126), Expect = 4e-07
 Identities = 45/164 (27%), Positives = 71/164 (43%), Gaps = 31/164 (18%)

Query: 78  TYKEVYEEVLQIVSALRASGAEPGCRVGIYGANCPQWVEAMEACNALSLICVPLYDTLGP 137
           TY E+   V ++ + LR  G   G R+ +   N    V    AC  +  I VPL      
Sbjct: 24  TYAELDALVGRLAAVLRRRGCVDGERLAVLARNSVWLVALHFACARVGAIYVPL------ 77

Query: 138 GAVNFILDHAEIDFVFVQDKKVKELLSPDCRSAQRLRVMVCFTSLTAEQKEMAVQTGIKP 197
              N+ L  +E+D   +QD + + LL  D  +A R   +    +  A     A++    P
Sbjct: 78  ---NWRLSASELD-ALLQDAEPRLLLGDDAVAAGRT-DVEDLAAFIASAD--ALEPADTP 130

Query: 198 YSWDEFLHLGKVNEMEILPPQPFNICTIMYTSGTSGDPKGVVLT 241
                            +PP+  ++  I++TSGTSG PKGV+L+
Sbjct: 131 S----------------IPPERVSL--ILFTSGTSGQPKGVMLS 156

Length = 488

>gnl|CDD|237108 PRK12467, PRK12467, peptide synthase; Provisional

 Score = 53.2 bits (128), Expect = 5e-07
 Identities = 68/324 (20%), Positives = 111/324 (34%), Gaps = 79/324 (24%)

Query: 218  QPFNICTIMYTSGTSGDPKGVVLTHETIATFVSGVDLFLDQFEDKMTVDDVYLSFLPLAH 277
               N+  ++YTSG++G PKGV + H  +A  +  +         ++  +D  L F+  + 
Sbjct: 3235 MGENLAYVIYTSGSTGKPKGVGVRHGALANHLCWI-----AEAYELDANDRVLLFMSFS- 3288

Query: 278  ILDRVIEEYFFRRGASVGYYHGDLNALRDDLMELKPTLLAGVPRVFEKIHEGIKKALEEL 337
              D   E +                           TL+ G   V   + +      EEL
Sbjct: 3289 -FDGAQERFL-------------------------WTLICGGCLV---VRDNDLWDPEEL 3319

Query: 338  RPL--RRRIFDALYKYKLAWMNMGYKQREASPLADLLAFRKVKARLGGRLRLVISGGAPL 395
                   RI  A +                + L                L + + GG  +
Sbjct: 3320 WQAIHAHRISIACFP--------------PAYLQQFAEDAGGAD--CASLDIYVFGGEAV 3363

Query: 396  ST-EVEEFLRVTCCAFLVQGYGLTET--------CGPTTVCFPDEMCMVGTAGPVSVYS- 445
                 E+  R      L  GYG TE         CG   VC      +       S+Y  
Sbjct: 3364 PPAAFEQVKRKLKPRGLTNGYGPTEAVVTVTLWKCGGDAVCEAPYAPIGRPVAGRSIYVL 3423

Query: 446  ELRLEEVPEMGYSPLDDPPCGEVCVRGKTLFSGYYKNPDLTRESIIDGWFH--------T 497
            + +L  VP +G +       GE+ + G  L  GY++ P LT E  +   F         T
Sbjct: 3424 DGQLNPVP-VGVA-------GELYIGGVGLARGYHQRPSLTAERFVADPFSGSGGRLYRT 3475

Query: 498  GDIGQILPNGVVKIIDRKKNLIKI 521
            GD+ +   +GV++ + R  + +KI
Sbjct: 3476 GDLARYRADGVIEYLGRIDHQVKI 3499

Length = 3956

>gnl|CDD|180167 PRK05620, PRK05620, long-chain-fatty-acid--CoA ligase; Validated

 Score = 52.5 bits (126), Expect = 5e-07
 Identities = 31/101 (30%), Positives = 47/101 (46%), Gaps = 18/101 (17%)

Query: 466 GEVCVRGKTLFSGYYKNP-----------------DLTRESIIDGWFHTGDIGQILPNGV 508
           GE+ VRG  + + YY +P                 D       DGW  TGD+G +  +G 
Sbjct: 386 GEIQVRGNWVTASYYHSPTEEGGGAASTFRGEDVEDANDRFTADGWLRTGDVGSVTRDGF 445

Query: 509 VKIIDRKKNLIKISQGEYVALEYLENVYCVAPIIEDIWVYG 549
           + I DR +++I+ S GE++    LEN    AP + +  V G
Sbjct: 446 LTIHDRARDVIR-SGGEWIYSAQLENYIMAAPEVVECAVIG 485

Length = 576

>gnl|CDD|235724 PRK06178, PRK06178, acyl-CoA synthetase; Validated

 Score = 52.0 bits (125), Expect = 7e-07
 Identities = 52/212 (24%), Positives = 78/212 (36%), Gaps = 25/212 (11%)

Query: 78  TYKEVYEEVLQIVSALRASGAEPGCRVGIYGANCPQWVEAMEACNALSLICVPLYDTLGP 137
           TY E+ E   +  + LR  G   G RV ++  NCPQ+         L  + VP+      
Sbjct: 60  TYAELDELSDRFAALLRQRGVGAGDRVAVFLPNCPQFHIVFFGILKLGAVHVPVSPLFRE 119

Query: 138 GAVNFILDHAEIDFVFVQDKKVKELLSPDCRSAQRLRVMVCFTSL--------TAEQKEM 189
             +++ L+ A  + +   D+     +    R+   LR  V  TSL        T    + 
Sbjct: 120 HELSYELNDAGAEVLLALDQLAP--VVEQVRAETSLR-HVIVTSLADVLPAEPTLPLPDS 176

Query: 190 AVQTGIKPYSWDEFL-HLGKVNEMEILP-PQPFNICTIMYTSGTSGDPKGVVLTHE---- 243
                +      + L  L        LP P    +  + YT GT+G PKG   T      
Sbjct: 177 LRAPRLAAAGAIDLLPALRACTAPVPLPPPALDALAALNYTGGTTGMPKGCEHTQRDMVY 236

Query: 244 TIATFVSGVDLFLDQFEDKMTVDDVYLSFLPL 275
           T A     V +   +       D V+LSFLP 
Sbjct: 237 TAAAAY-AVAVVGGE-------DSVFLSFLPE 260

Length = 567

>gnl|CDD|181207 PRK08043, PRK08043, bifunctional acyl-[acyl carrier protein] synthetase/2-acylglycerophosphoethanolamine acyltransferase; Validated

 Score = 51.6 bits (124), Expect = 1e-06
 Identities = 48/168 (28%), Positives = 72/168 (42%), Gaps = 35/168 (20%)

Query: 384 RLRLVISGGAPLSTEVEEF------LRVTCCAFLVQGYGLTETCGPTTVCFPDEMCMVGT 437
           RLR V++G   L    ++       LR+      ++GYG+TE C P            GT
Sbjct: 480 RLRYVVAGAEKLQESTKQLWQDKFGLRI------LEGYGVTE-CAPVVSINVPMAAKPGT 532

Query: 438 AGPVSVYSELRLEEVP--EMGYSPLDDPPCGEVCVRGKTLFSGYYK--NPDLTRESIID- 492
            G +    + RL  VP  E G         G + ++G  + +GY +   P +      + 
Sbjct: 533 VGRILPGMDARLLSVPGIEQG---------GRLQLKGPNIMNGYLRVEKPGVLEVPTAEN 583

Query: 493 -------GWFHTGDIGQILPNGVVKIIDRKKNLIKISQGEYVALEYLE 533
                  GW+ TGDI +    G V+I  R K   KI+ GE V+LE +E
Sbjct: 584 ARGEMERGWYDTGDIVRFDEQGFVQIQGRAKRFAKIA-GEMVSLEMVE 630

Length = 718

>gnl|CDD|237374 PRK13388, PRK13388, acyl-CoA synthetase; Provisional

 Score = 50.8 bits (122), Expect = 2e-06
 Identities = 40/160 (25%), Positives = 63/160 (39%), Gaps = 15/160 (9%)

Query: 400 EEFLRVTCCAFLVQGYGLTETCGPTTVCFPDEMCMVGTAGP----VSVYSELRLEEVP-- 453
            EF R   C  +  GYG +E          +     G+ G     V++Y+   L E    
Sbjct: 281 AEFSRRFGCQ-VEDGYGSSEGAVIVV---REPGTPPGSIGRGAPGVAIYNPETLTECAVA 336

Query: 454 ---EMGYSPLDDPPCGE-VCVRGKTLFSGYYKNPDLTRESIIDGWFHTGDIGQILPNGVV 509
                G     D   GE V   G   F GYY NP+ T E +  G + +GD+     +G +
Sbjct: 337 RFDAHGALLNADEAIGELVNTAGAGFFEGYYNNPEATAERMRHGMYWSGDLAYRDADGWI 396

Query: 510 KIIDRKKNLIKISQGEYVALEYLENVYCVAPIIEDIWVYG 549
               R  + +++  GE ++   +E +    P I  + VY 
Sbjct: 397 YFAGRTADWMRVD-GENLSAAPIERILLRHPAINRVAVYA 435

Length = 540

>gnl|CDD|183506 PRK12406, PRK12406, long-chain-fatty-acid--CoA ligase; Provisional

 Score = 50.5 bits (121), Expect = 2e-06
 Identities = 55/184 (29%), Positives = 87/184 (47%), Gaps = 12/184 (6%)

Query: 385 LRLVISGGAPLSTEVEEFLRVTCCAFLVQGYGLTETCGPTTVCFPDE-MCMVGTAGPVSV 443
           LR VI   AP   +V+  +       + + YG TE+ G  T    ++ +   GT G  + 
Sbjct: 273 LRHVIHAAAPCPADVKRAMIEWWGPVIYEYYGSTES-GAVTFATSEDALSHPGTVGKAAP 331

Query: 444 YSELRLEEVPEMGYSPLDDPPCGEVCVR--GKTLFSGYYKNPDLTRESIIDGWFHTGDIG 501
            +ELR   V E G  PL     GE+  R  G   F+ Y+  P+   E    G+  +GD+G
Sbjct: 332 GAELRF--VDEDG-RPLPQGEIGEIYSRIAGNPDFT-YHNKPEKRAEIDRGGFITSGDVG 387

Query: 502 QILPNGVVKIIDRKKNLIKISQGEYVALEYLENVYCVAPIIEDIWVYG--DS-LKSMLVA 558
            +  +G + + DRK++++ IS G  +    +E V    P + D  V+G  D+     L+A
Sbjct: 388 YLDADGYLFLCDRKRDMV-ISGGVNIYPAEIEAVLHAVPGVHDCAVFGIPDAEFGEALMA 446

Query: 559 VVVP 562
           VV P
Sbjct: 447 VVEP 450

Length = 509

>gnl|CDD|235908 PRK07008, PRK07008, long-chain-fatty-acid--CoA ligase; Validated

 Score = 49.7 bits (119), Expect = 3e-06
 Identities = 49/177 (27%), Positives = 75/177 (42%), Gaps = 31/177 (17%)

Query: 78  TYKEVYEEVLQIVSALRASGAEPGCRVGIYGANCPQWVEAMEACNALSLICVPLYDTLGP 137
           TY++      Q+  AL A G EPG RVG    N  + +EA    +    +C  +   L P
Sbjct: 41  TYRDCERRAKQLAQALAALGVEPGDRVGTLAWNGYRHLEAYYGVSGSGAVCHTINPRLFP 100

Query: 138 GAVNFILDHAE-----IDFVFVQDKKVKELLSPDCRSAQRLRVMVCFTSLTAEQKEM--- 189
             + +I++HAE      D  F+    + + L+P C + +    M     L A    +   
Sbjct: 101 EQIAYIVNHAEDRYVLFDLTFL---PLVDALAPQCPNVKGWVAMTDAAHLPAGSTPLLCY 157

Query: 190 ----AVQTGIKPYSWDEFLHLGKVNEMEILPPQPFNICTIMYTSGTSGDPKGVVLTH 242
                 Q G   Y W  F      +E      Q  ++C   YTSGT+G+PKG + +H
Sbjct: 158 ETLVGAQDG--DYDWPRF------DEN-----QASSLC---YTSGTTGNPKGALYSH 198

Length = 539

>gnl|CDD|213308 cd05943, AACS, Acetoacetyl-CoA synthetase (acetoacetate-CoA ligase, AACS)

 Score = 50.3 bits (121), Expect = 3e-06
 Identities = 48/188 (25%), Positives = 73/188 (38%), Gaps = 40/188 (21%)

Query: 78  TYKEVYEEVLQIVSALRASGAEPGCRVGIYGANCPQWVEAMEACNALSLI---CVPLYDT 134
           ++ E+  +V ++ +ALR  G +PG RV  Y  N P+ V AM A  ++  I   C P    
Sbjct: 88  SWAELRSQVARLAAALRDLGVKPGDRVAGYLPNVPEAVIAMLATASIGAIWSSCSP---D 144

Query: 135 LGPGAVNFILDHAE---------IDFVFVQDK------KVKELLS--PDCRSAQRLRVMV 177
            G  AV   LD            +D      K      K+ E++   P       L  +V
Sbjct: 145 FGVEAV---LDRFGQIEPKVLFAVDGYVYNGKEHDRREKIAEIVKGLPS------LEAVV 195

Query: 178 CFTSLTAEQKEMAVQTGIKPYSWDEFLHLGKVNEMEIL--PPQPFN-ICTIMYTSGTSGD 234
               L++       Q     +S    L     +    L     PF+    I+Y+SGT+G 
Sbjct: 196 VVPYLSS-----DAQPAALKFSALTLLWSLAGDRAAPLEFERLPFDHPLWILYSSGTTGL 250

Query: 235 PKGVVLTH 242
           PK +V   
Sbjct: 251 PKCIVHGA 258

AACS is a cytosolic ligase that specifically activates acetoacetate to its coenzyme A ester by a two-step reaction. Acetoacetate first reacts with ATP to form an acyl-adenylate intermediate, which then reacts with CoA to produce an acyl-CoA ester. This is the first step of the mevalonate pathway of isoprenoid biosynthesis via isopentenyl diphosphate. Isoprenoids are a large class of compounds found in all living organisms. AACS is widely distributed in bacteria, archaea and eukaryotes. In bacteria, AACS is known to exhibit an important role in the metabolism of poly-b-hydroxybutyrate, an intracellular reserve of organic carbon and chemical energy by some microorganisms. In mammals, AACS influences the rate of ketone body utilization for the formation of physiologically important fatty acids and cholesterol. Length = 616

>gnl|CDD|213278 cd05910, FACL_like_1, Uncharacterized subfamily of fatty acid CoA ligase (FACL)

 Score = 49.7 bits (119), Expect = 3e-06
 Identities = 78/372 (20%), Positives = 114/372 (30%), Gaps = 95/372 (25%)

Query: 225 IMYTSGTSGDPKGVVLTHETIATFVSGVDLFLDQFEDKMTVDDVYLSFLPLAHILD---- 280
           I++TSG++G PKGVV TH    TF + +D     +   +   D  L+  P   +      
Sbjct: 90  ILFTSGSTGPPKGVVYTHR---TFAAQIDALRSLYG--IREGDRDLAAFPPFALFGPALG 144

Query: 281 --RVIEEYFFRRGASV--GYYHGDLNALRDDLMELKPTLLAGVPRVFEKIHEGIKKALEE 336
              VI        A++        +  +    +   P LL  V R  E+        L  
Sbjct: 145 VTTVIPAMDPTAPAALDPAKLAQAIREIGASCVFGSPALLKNVARYCEE----NGIQLPS 200

Query: 337 LR-----------PLRRRIFDALYKYKLAWMNMGYKQREASPLADLLAFRKVKARLGGRL 385
           LR            L RR    L           Y   EA P+A +              
Sbjct: 201 LRRVLSAGAPVPPDLLRRFVANLMPEAEIHTP--YGATEALPVASI------------EG 246

Query: 386 RLVISGGAPLSTEVEEFLRVTCCAFLVQGYGLTETCGPTTVCFPDEMCMVGTAGPVSVYS 445
           R V++     S E  E     C    V G               D   +    GP++ + 
Sbjct: 247 REVLAE----SAEPPEAGAGVCVGHPVPGI--------------DVRIIPIDDGPIASWD 288

Query: 446 ---ELRLEEVPEMGYSPLDDPPCGEVCVRGKTLFSGYYKNPDLTRESIID----GWFHTG 498
              EL   EV             GE+ V G  +   YY  P+ T+ + I      W   G
Sbjct: 289 DDIELPPGEV-------------GEIIVSGPHVTREYYNRPEATKLAKISDGNRIWHRMG 335

Query: 499 DIGQILPNGVVKIIDRKKNLIKISQGEY------VALEYLENVYCVA--PIIEDIWVYGD 550
           D+G     G +    RK + ++ + G                V   A   +       G 
Sbjct: 336 DLGYFDDQGRLWFCGRKAHRVETAGGTLFTVPVEQVFNRHPGVRRSALVGV-------GK 388

Query: 551 SLKSMLVAVVVP 562
                 V VV P
Sbjct: 389 PGTQAPVLVVEP 400

Fatty acyl-CoA ligases catalyze the ATP-dependent activation of fatty acids in a two-step reaction. The carboxylate substrate first reacts with ATP to form an acyl-adenylate intermediate, which then reacts with CoA to produce an acyl-CoA ester. This is a required step before free fatty acids can participate in most catabolic and anabolic reactions. Length = 455

>gnl|CDD|236108 PRK07824, PRK07824, O-succinylbenzoic acid--CoA ligase; Provisional

 Score = 49.3 bits (118), Expect = 3e-06
 Identities = 48/181 (26%), Positives = 75/181 (41%), Gaps = 38/181 (20%)

Query: 388 VISGGAPLSTEVEEF---LRVTCCAFLVQGYGLTETCGPTTVCFPDEMCMVGTAGPVSVY 444
           V+ GG P    V +      +     +V+ YG++ET G    C  D + + G        
Sbjct: 156 VLVGGGPAPAPVLDAAAAAGIN----VVRTYGMSETSGG---CVYDGVPLDGV------- 201

Query: 445 SELRLEEVPEMGYSPLDDPPCGEVCVRGKTLFSGYYKNPDLTRESIIDGWFHTGDIGQIL 504
             +R+E+              G + + G TL  GY +NP         GWF T D+G  L
Sbjct: 202 -RVRVED--------------GRIALGGPTLAKGY-RNPVDPDPFAEPGWFRTDDLG-AL 244

Query: 505 PNGVVKIIDRKKNLIKISQGEYVALEYLENVYCVAPIIEDIWVYG---DSLKSMLVAVVV 561
            +GV+ ++ R  + I  + G  V  + +E      P + D  V+G   D L   +VA VV
Sbjct: 245 DDGVLTVLGRADDAIS-TGGLTVLPQVVEAALATHPAVADCAVFGLPDDRLGQRVVAAVV 303

Query: 562 P 562
            
Sbjct: 304 G 304

Length = 358

>gnl|CDD|178097 PLN02479, PLN02479, acetate-CoA ligase

 Score = 49.5 bits (118), Expect = 5e-06
 Identities = 52/210 (24%), Positives = 88/210 (41%), Gaps = 19/210 (9%)

Query: 78  TYKEVYEEVLQIVSALRASGAEPGCRVGIYGANCPQWVEA---MEACNALSLICVPLYDT 134
           T+ + Y+   ++ SAL      PG  V +   N P   EA   +    A+ + CV +   
Sbjct: 47  TWAQTYQRCRRLASALAKRSIGPGSTVAVIAPNIPAMYEAHFGVPMAGAV-VNCVNI--R 103

Query: 135 LGPGAVNFILDHAEIDFVFVQDK------KVKELLSPDCRSAQRLRVMVCFTSLTAEQKE 188
           L    + F+L+H++ + V V  +      +  ++L+   +S+ +  +++     T + K 
Sbjct: 104 LNAPTIAFLLEHSKSEVVMVDQEFFTLAEEALKILAEKKKSSFKPPLLIVIGDPTCDPKS 163

Query: 189 MAVQTGIKPYSWDEFLHLGKVNEMEILPPQ-PFNICTIMYTSGTSGDPKGVVLTHETIAT 247
           +    G     +++FL  G   E    PP   +    + YTSGT+  PKGVVL H     
Sbjct: 164 LQYALGKGAIEYEKFLETGD-PEFAWKPPADEWQSIALGYTSGTTASPKGVVLHHRGAYL 222

Query: 248 FVSGVDLFLDQFEDKMTVDDVYLSFLPLAH 277
                 L        M    VYL  LP+ H
Sbjct: 223 MALSNALIWG-----MNEGAVYLWTLPMFH 247

Length = 567

>gnl|CDD|236403 PRK09192, PRK09192, acyl-CoA synthetase; Validated

 Score = 49.2 bits (118), Expect = 6e-06
 Identities = 46/206 (22%), Positives = 77/206 (37%), Gaps = 35/206 (16%)

Query: 79  YKEVYEEVLQIVSALRASGAEPGCRVGIYGANCPQWVEAMEACNALSLICVPLYDTLGPG 138
           Y+ +          L A G +PG RV +       +VEA  AC    L+ VPL     P 
Sbjct: 52  YQTLRARAEAGARRLLALGLKPGDRVALIAETDGDFVEAFFACQYAGLVPVPL-----PL 106

Query: 139 AVNFILDHAEIDFVFVQDKKVKELLSPDCRSAQRLRVMVCFTSLTAEQKEMA-----VQT 193
            + F    + I        +++ +L+    SAQ        T    E             
Sbjct: 107 PMGFGGRESYIA-------QLRGMLA----SAQ---PAAIITP--DELLPWVNEATHGNP 150

Query: 194 GIKPYSWDEFLHLGKVNEMEILPPQPFNICTIMYTSGTSGDPKGVVLTHETIATFVSGVD 253
            +   S   F       ++ +  P P +I  + Y+SG++  P+GV++TH  +   +  + 
Sbjct: 151 LLHVLSHAWF-KALPEADVALPRPTPDDIAYLQYSSGSTRFPRGVIITHRALMANLRAIS 209

Query: 254 LFLDQFEDKMTV--DDVYLSFLPLAH 277
                  D + V   D  +S+LP  H
Sbjct: 210 H------DGLKVRPGDRCVSWLPFYH 229

Length = 579

>gnl|CDD|213314 cd05967, PrpE, Propionyl-CoA synthetase (PrpE)

 Score = 48.8 bits (117), Expect = 6e-06
 Identities = 48/175 (27%), Positives = 73/175 (41%), Gaps = 23/175 (13%)

Query: 78  TYKEVYEEVLQIVSALRASGAEPGCRVGIYGANCPQWVEAMEACNALSLICVPLYDTLGP 137
           TY E+Y+EV ++   LR  G   G RV IY    P+ V AM AC  +  I   ++     
Sbjct: 75  TYAELYDEVSRLAGVLRKLGVVKGDRVIIYMPMIPEAVIAMLACARIGAIHSVVFGGFAS 134

Query: 138 GAVNFILDHAE------IDFVFVQDKKV--KELLSPDCRSAQR--LRVMVCFTSLTAEQK 187
             +   +D A+        F     + V  K LL      +Q    +V++    L   Q 
Sbjct: 135 KELASRIDDAKPKLIVTASFGIEPGRVVPYKPLLDKALELSQHKPHKVLI----LNRGQV 190

Query: 188 EMAVQTGIKPYSWDEFLHLGKVNEMEILPPQPF---NICTIMYTSGTSGDPKGVV 239
              ++ G +   W E +      +   +   P    +   I+YTSGT+G PKGVV
Sbjct: 191 PAPLKPG-RDLDWAELMA-----KARPVDCVPVESTDPLYILYTSGTTGKPKGVV 239

PrpE catalyzes the first step of the 2-methylcitric acid cycle for propionate catabolism. It activates propionate to propionyl-CoA in a two-step reaction, which proceeds through a propionyl-AMP intermediate and requires ATP and Mg2+. In Salmonella enterica, the PrpE protein is required for growth of S. enterica on propionate and can substitute for the acetyl-CoA synthetase (Acs) enzyme during growth on acetate. PrpE can also activate acetate, 3HP, and butyrate to their corresponding CoA-thioesters, although with less efficiency. Length = 607

>gnl|CDD|236019 PRK07445, PRK07445, O-succinylbenzoic acid--CoA ligase; Reviewed

 Score = 48.8 bits (117), Expect = 6e-06
 Identities = 47/191 (24%), Positives = 77/191 (40%), Gaps = 36/191 (18%)

Query: 383 GRLRLVISGGAP-----LSTEVEEFLRVTCCAFLVQGYGLTETCGPTTVCFPDEMCMVGT 437
            + R ++ GGAP     L    +  LR+         YG+TET        PD+      
Sbjct: 230 AQFRTILLGGAPAWPSLLEQARQLQLRLAPT------YGMTETASQIATLKPDDF----L 279

Query: 438 AGPVSVYSEL---RLEEVPEMGYSPLDDPPCGEVCVRGKTLFSGYYKNPDLTRESIIDGW 494
           AG  S    L   ++          +     G + ++ ++L  GYY  P +  +S   G 
Sbjct: 280 AGNNSSGQVLPHAQIT---------IPANQTGNITIQAQSLALGYY--PQI-LDS--QGI 325

Query: 495 FHTGDIGQILPNGVVKIIDRKKNLIKISQGEYVALEYLENVYCVAPIIEDIWVYG--DSL 552
           F T D+G +   G + I+ R    I I+ GE V    +E       +++D+ V G  D  
Sbjct: 326 FETDDLGYLDAQGYLHILGRNSQKI-ITGGENVYPAEVEAAILATGLVQDVCVLGLPDPH 384

Query: 553 -KSMLVAVVVP 562
              ++ A+ VP
Sbjct: 385 WGEVVTAIYVP 395

Length = 452

>gnl|CDD|181195 PRK08008, caiC, putative crotonobetaine/carnitine-CoA ligase; Validated

 Score = 48.9 bits (117), Expect = 7e-06
 Identities = 44/204 (21%), Positives = 79/204 (38%), Gaps = 19/204 (9%)

Query: 78  TYKEVYEEVLQIVSALRASGAEPGCRVGIYGANCPQWVEAMEACNALSLICVPLYDTLGP 137
           +Y E+ EE+ +  +   + G   G +V ++  NCP+++        +  I VP+   L  
Sbjct: 39  SYLELNEEINRTANLFYSLGIRKGDKVALHLDNCPEFIFCWFGLAKIGAIMVPINARLLR 98

Query: 138 GAVNFILDHAEIDFVFVQDKKVKELLSPDCRSAQRLRVMVCFTSLTAEQKEMAVQTGIKP 197
               +IL +++   +    +            A  LR  +C T +     +         
Sbjct: 99  EESAWILQNSQASLLVTSAQFYPMYRQIQQEDATPLR-HICLTRVALPADDGVS------ 151

Query: 198 YSWDEFLHLGKVNEMEILPPQPFNICTIMYTSGTSGDPKGVVLTHETIATFVSGVDLFLD 257
            S+ +             P    +   I++TSGT+  PKGVV+TH  +         F  
Sbjct: 152 -SFTQLKAQQPATLCYAPPLSTDDTAEILFTSGTTSRPKGVVITHYNL--------RFAG 202

Query: 258 QFED---KMTVDDVYLSFLPLAHI 278
            +      +  DDVYL+ +P  HI
Sbjct: 203 YYSAWQCALRDDDVYLTVMPAFHI 226

Length = 517

>gnl|CDD|213321 cd05974, MACS_like_1, Uncharacterized subfamily of medium-chain acyl-CoA synthetase (MACS)

 Score = 48.5 bits (116), Expect = 7e-06
 Identities = 42/169 (24%), Positives = 61/169 (36%), Gaps = 36/169 (21%)

Query: 368 LADLLAFRKVKARLGGRLRLVISGGAPLSTEVEEFLRVTCCAFLVQGYGLTETCGPTTVC 427
             DL  +         RLR  +S G PL+ EV E ++      +  GYG TET       
Sbjct: 191 QQDLAQYDV-------RLREAVSAGEPLNPEVIERVKKAWGLTIRDGYGQTET------- 236

Query: 428 FPDEMCMVGT--AGPVSVYSELRLEEVPEMGY-----SPLDDPPC---GEVCV----RGK 473
                 M+G      V   S  R    P  GY                GE+ +    R  
Sbjct: 237 ----TAMIGNSPGQKVKPGSMGR----PLPGYRVVLLDDEGKEIPVTEGEIALDLGDRPI 288

Query: 474 TLFSGYYKNPDLTRESIIDGWFHTGDIGQILPNGVVKIIDRKKNLIKIS 522
            L  GY  +P+ T  +   G++ TGD      +G +  + R  ++ K S
Sbjct: 289 GLMLGYMGDPEKTAAAFRGGYYRTGDKAYRDEDGYLWFVGRADDVFKSS 337

MACS catalyzes the two-step activation of medium chain fatty acids (containing 4-12 carbons). The carboxylate substrate first reacts with ATP to form an acyl-adenylate intermediate, which then reacts with CoA to produce an acyl-CoA ester. MACS enzymes are localized to mitochondria. Length = 433

>gnl|CDD|213277 cd05909, AAS_C, C-terminal domain of the acyl-acyl carrier protein synthetase (also called 2-acylglycerophosphoethanolamine acyltransferase, Aas)

 Score = 48.4 bits (116), Expect = 8e-06
 Identities = 22/64 (34%), Positives = 33/64 (51%), Gaps = 9/64 (14%)

Query: 216 PPQPFNICTIMYTSGTSGDPKGVVLTHETIATFVSGVDLFLDQFEDKMTV--DDVYLSFL 273
             +P +   I++TSG+ G PKGVVL+H  +   +       DQ    + +  +DV L  L
Sbjct: 141 GAKPDDPAVILFTSGSEGLPKGVVLSHRNLLANI-------DQIAAVIDLNTEDVLLGAL 193

Query: 274 PLAH 277
           PL H
Sbjct: 194 PLFH 197

Acyl-acyl carrier protein synthase (Aas) is a membrane protein responsible for a minor pathway of incorporating exogenous fatty acids into membrane phospholipids. Its in vitro activity is characterized by the ligation of free fatty acids between 8 and 18 carbons in length to the acyl carrier protein sulfydryl group (ACP-SH) in the presence of ATP and Mg2+. However, its in vivo function is as a 2-acylglycerophosphoethanolamine (2-acyl-GPE) acyltransferase. The reaction occurs in two steps: the acyl chain is first esterified to acyl carrier protein (ACP) via a thioester bond, followed by a second step where the acyl chain is transferred to a 2-acyllysophospholipid, thus completing the transacylation reaction. This model represents the C-terminal domain of the enzyme, which belongs to the class I adenylate-forming enzyme family, including acyl-CoA synthetases. Length = 489

>gnl|CDD|236215 PRK08276, PRK08276, long-chain-fatty-acid--CoA ligase; Validated

 Score = 48.7 bits (117), Expect = 8e-06
 Identities = 51/204 (25%), Positives = 74/204 (36%), Gaps = 22/204 (10%)

Query: 78  TYKEVYEEVLQIVSALRASGAEPGCRVGIYGANCPQWVEAMEACNALSLICVPLYDTLGP 137
           TY E+     ++   LRA G   G  V I   N P++ E   A     L   P       
Sbjct: 13  TYGELEARSNRLAHGLRALGLREGDVVAILLENNPEFFEVYWAARRSGLYYTP------- 65

Query: 138 GAVNFILDHAEIDFVFVQDKKVKELL-SPDCRSAQRLRVMVCFTSLTAEQKEMAVQTGIK 196
             +N+ L  AEI ++ V D   K L+ S           +            + V   + 
Sbjct: 66  --INWHLTAAEIAYI-VDDSGAKVLIVSAALADT--AAELAAELPAGVPL-LLVVAGPVP 119

Query: 197 PY-SWDEFLHLGKVNEMEILPPQPFNICTIMYTSGTSGDPKGVV--LTHETIATFVSGVD 253
            + S++E L       +            ++Y+SGT+G PKG+   L          G+ 
Sbjct: 120 GFRSYEEALAAQPDTPIADETAG----ADMLYSSGTTGRPKGIKRPLPGLDPDE-APGMM 174

Query: 254 LFLDQFEDKMTVDDVYLSFLPLAH 277
           L L  F      D VYLS  PL H
Sbjct: 175 LALLGFGMYGGPDSVYLSPAPLYH 198

Length = 502

>gnl|CDD|237108 PRK12467, PRK12467, peptide synthase; Provisional

 Score = 47.8 bits (114), Expect = 2e-05
 Identities = 69/327 (21%), Positives = 115/327 (35%), Gaps = 75/327 (22%)

Query: 214  ILPPQPFNICTIMYTSGTSGDPKGVVLTHETIATFVSGVDLFLDQFEDKMTVDDVYLSFL 273
             +   P N+  ++YTSG++G PKG    H  +   V+ +    + ++  ++  DV L F 
Sbjct: 1712 AVNLAPQNLAYVIYTSGSTGRPKGAGNRHGAL---VNRLCATQEAYQ--LSAADVVLQFT 1766

Query: 274  PLAHILDRVIEEYFFR--RGASV----GYYHGDLNALRDDLMELKPTLLAGVPRVFEKIH 327
              A   D  + E F+    GA +       H D   L   +   + T L  VP + +++ 
Sbjct: 1767 SFA--FDVSVWELFWPLINGARLVIAPPGAHRDPEQLIQLIERQQVTTLHFVPSMLQQLL 1824

Query: 328  EGIKKALEELRPLRRRIFDALYKYKLAWMNMGYKQREASPLADLLAFRKVKARLGGRLRL 387
            + + + +E    LRR +                   EA  +    A R    RL      
Sbjct: 1825 Q-MDEQVEHPLSLRRVVCGG----------------EALEVE---ALRPWLERLPDT--- 1861

Query: 388  VISGGAPLSTEVEEFLRVTCCAFLVQGYGLTETC-----GPTTVCFPDEMCMVGTAGPVS 442
                                   L   YG TET              +    V    P++
Sbjct: 1862 ----------------------GLFNLYGPTETAVDVTHWTCRRKDLEGRDSVPIGQPIA 1899

Query: 443  VYSELRLEEVPEMGYSPLDDPPCGEVCVRGKTLFSGYYKNPDLTRESIIDGWF------- 495
              S   L+       +P+     GE+ + G  L  GY   P LT E  +   F       
Sbjct: 1900 NLSTYILDA----SLNPVPIGVAGELYLGGVGLARGYLNRPALTAERFVADPFGTVGSRL 1955

Query: 496  -HTGDIGQILPNGVVKIIDRKKNLIKI 521
              TGD+ +   +GV++ + R  + +KI
Sbjct: 1956 YRTGDLARYRADGVIEYLGRIDHQVKI 1982

Length = 3956

>gnl|CDD|180293 PRK05857, PRK05857, acyl-CoA synthetase; Validated

 Score = 46.9 bits (111), Expect = 3e-05
 Identities = 48/158 (30%), Positives = 64/158 (40%), Gaps = 23/158 (14%)

Query: 385 LRLVISGGAPLSTEVEEFLRVTCCAFLVQGYGLTETCGPTTVCFPD--------EMCMVG 436
           LRLV  GG+        F+  T      Q YGL+ET G T +C P         E   VG
Sbjct: 288 LRLVGYGGSRAIAADVRFIEATGVR-TAQVYGLSET-GCTALCLPTDDGSIVKIEAGAVG 345

Query: 437 TAGP-VSVYSELRLEEVPEMGYSPL-----DDPPCGEVCVRGKTLFSGYYKNPDLTRESI 490
              P V VY           G  P           G + ++      GY+ NP+ T E +
Sbjct: 346 RPYPGVDVYLA------ATDGIGPTAPGAGPSASFGTLWIKSPANMLGYWNNPERTAEVL 399

Query: 491 IDGWFHTGDIGQILPNGVVKIIDRKKNLIKISQGEYVA 528
           IDGW +TGD+ +   +G   I  R   +I I  G  +A
Sbjct: 400 IDGWVNTGDLLERREDGFFYIKGRSSEMI-ICGGVNIA 436

Length = 540

>gnl|CDD|213291 cd05924, FACL_like_5, Uncharacterized subfamily of fatty acid CoA ligase (FACL)

 Score = 46.1 bits (110), Expect = 3e-05
 Identities = 51/191 (26%), Positives = 76/191 (39%), Gaps = 25/191 (13%)

Query: 384 RLRLVISGGAPLSTEV-EEFLRVTCCAFLVQGYGLTET--CGPTTVCFPDEMCMVGTA-- 438
            LR + S GA  S EV +  L +     LV   G +ET   G +            T   
Sbjct: 136 SLRAISSSGAMWSPEVKQGLLELLPNLALVDALGASETGGGGSSVSRAGGA---SATGKF 192

Query: 439 --GPVSVYSELRLEEVPEMGYSPLDDPPCGEVCVRGKTLFSGYYKNPDLTRESI--IDG- 493
             GP +V  +    EVP            G +   G+    GYYK+P+ T ++   IDG 
Sbjct: 193 ELGPDTVVLDEDGSEVPP------GSGEVGWIARGGRVPL-GYYKDPEKTAKTFREIDGV 245

Query: 494 -WFHTGDIGQILPNGVVKIIDRKKNLIKISQGEYVALEYLENVYCVAPIIEDIWVYG--- 549
            +   GD  ++  +G + ++ R    I  + GE V  E +E      P + D  V G   
Sbjct: 246 RYAVPGDFARVEADGTITLLGRGSVCIN-TGGEKVFPEEVEEALKAHPDVADALVVGVPD 304

Query: 550 DSLKSMLVAVV 560
           +     +VAVV
Sbjct: 305 ERWGQRVVAVV 315

Fatty acyl-CoA ligases catalyze the ATP-dependent activation of fatty acids in a two-step reaction. The carboxylate substrate first reacts with ATP to form an acyl-adenylate intermediate, which then reacts with CoA to produce an acyl-CoA ester. This is a required step before free fatty acids can participate in most catabolic and anabolic reactions. Length = 365

>gnl|CDD|213286 cd05919, BCL_like, Benzoate CoA ligase (BCL) and similar adenylate forming enzymes

 Score = 46.2 bits (110), Expect = 4e-05
 Identities = 23/71 (32%), Positives = 35/71 (49%)

Query: 78  TYKEVYEEVLQIVSALRASGAEPGCRVGIYGANCPQWVEAMEACNALSLICVPLYDTLGP 137
           TY+E+++   +  + LRA G  PG RV +   + P+ V A  AC     + V L   L P
Sbjct: 12  TYRELHDLANRFANVLRALGVSPGDRVLLLLPDSPELVAAFLACLKAGAVAVALNPLLTP 71

Query: 138 GAVNFILDHAE 148
             +  ILD + 
Sbjct: 72  QDLEHILDDSG 82

This family contains benzoate CoA ligase (BCL) and related ligases that catalyze the acylation of benzoate derivatives, 2-aminobenzoate and 4-hydroxybenzoate. Aromatic compounds represent the second most abundant class of organic carbon compounds after carbohydrates. Xenobiotic aromatic compounds are also a major class of man-made pollutants. Some bacteria use benzoate as the sole source of carbon and energy through benzoate degradation. Benzoate degradation starts with its activation to benzoyl-CoA by benzoate CoA ligase. The reaction catalyzed by benzoate CoA ligase proceeds via a two-step process; the first ATP-dependent step forms an acyl-AMP intermediate, and the second step forms the acyl-CoA ester with release of the AMP. Length = 436

>gnl|CDD|213311 cd05958, ABCL, 2-aminobenzoate-CoA ligase (ABCL)

 Score = 45.9 bits (109), Expect = 5e-05
 Identities = 117/556 (21%), Positives = 188/556 (33%), Gaps = 145/556 (26%)

Query: 19  PSVGPVYRNLLASNGFPSVDSDLNTAWDIFSMSVQKYPGNRMLGWRPFVDGKFGPYVWKT 78
           P   P +   L    +P     LN A ++    V    GNR          +     W T
Sbjct: 14  PEQWPEFTFDLPQFQYPER---LNCAAELLDRHVHNGRGNR-------PCFRTFEETW-T 62

Query: 79  YKEVYEEVLQIVSALRAS-GAEPGCRVGIYGANCPQ----WVEAMEACNALSLICVPLYD 133
           Y+++ +   +I   L    G  PG RV +  AN P     W+  ++A      I V    
Sbjct: 63  YQDLLDRANRIAHVLVEDLGVVPGNRVLLRSANTPMLVACWLAVLKA----GAIVVTTMP 118

Query: 134 TLGPGAVNFILDHAEIDFVFVQDKKVKELLSPDCRSAQRLRVMVCFTSLTAEQKEMAVQT 193
            L    +  I+D A I                           +C   LTA         
Sbjct: 119 LLRAKELTTIVDKARITHA------------------------LCDKRLTAAD------- 147

Query: 194 GIKPYSWDEFLHLGKVNEMEILPPQPFNICTIMYTSGTSGDPKGVVLTHETIATFVSGVD 253
                                      ++  I +TSGT+G PKG +  H  I   ++  D
Sbjct: 148 ---------------------------DVALIGFTSGTTGLPKGTMHFHRDI---LAICD 177

Query: 254 LFLDQFEDKMTVDDVYLSFLPLAHILDRVIEEYFFRRGASVGY--YHGDLNALRDDLMEL 311
            F  +   + T DDV++   PLA         + F  G  V +    G    L       
Sbjct: 178 AF-PRHVLQPTPDDVFIGSPPLA---------FTFGLGGLVLFPLRFGASAVL------- 220

Query: 312 KPTLLAGVPRVFEKIHEGIKKALEELRPLRRRIFDALYKYKLAWMNMGYKQREASPLADL 371
                                 LE+  P    +  A+ +++   +         +P A  
Sbjct: 221 ----------------------LEQATP--PLLLKAIQEHRATILF-------TAPTAYR 249

Query: 372 LAFRKVKARLGGRLRLVISGGAPLSTEV-EEFLRVTCCAFLVQGYGLTETCGPTTVCFPD 430
               KVKA     LR  +S G  L  +V +++   T    ++ G G TE      +   +
Sbjct: 250 AMLIKVKAFDISSLRKCVSAGETLPAKVWQDWYERTGLK-IIDGIGATEML-HIFISANE 307

Query: 431 EMCMVGTAG-PVSVYSELRLEEVPEMGYSPLDDPPCGEVCVRGKTLFSGYYKNPDLTRES 489
           E    G  G PV  Y    +++      + +     G + VRG T     Y + +  +E 
Sbjct: 308 ENAKPGATGKPVPGYEARIVDD----QGNEVPRGEAGRLAVRGPT--GCRYLDDERQQEY 361

Query: 490 IIDGWFHTGDIGQILPNGVVKIIDRKKNLIKISQGEYVALEYLENVYCVAPIIEDIWVYG 549
           + DGW  TGDI +   +G    + R  ++I +S G  +A   +E+     P + +  V G
Sbjct: 362 VRDGWNVTGDIFRQDEDGYFHYVARSDDMI-VSAGYNIAAPEVEDALLTHPDVAECAVIG 420

Query: 550 --DSLKSMLV-AVVVP 562
             D  +  +V A +V 
Sbjct: 421 VPDEERGQIVCAHIVL 436

ABCL catalyzes the initial step in the 2-aminobenzoate aerobic degradation pathway by activating 2-aminobenzoate to 2-aminobenzoyl-CoA. The reaction is carried out via a two-step process; the first step is ATP-dependent and forms a 2-aminobenzoyl-AMP intermediate, and the second step forms the 2-aminobenzoyl-CoA ester and releases the AMP. 2-Aminobenzoyl-CoA is further converted to 2-amino-5-oxo-cyclohex-1-ene-1-carbonyl-CoA catalyzed by 2-aminobenzoyl-CoA monooxygenase/reductase. ABCL has been purified from cells aerobically grown with 2-aminobenzoate as sole carbon, energy, and nitrogen source, and has been characterized as a monomer. Length = 487

>gnl|CDD|236097 PRK07788, PRK07788, acyl-CoA synthetase; Validated

 Score = 45.7 bits (109), Expect = 7e-05
 Identities = 104/496 (20%), Positives = 160/496 (32%), Gaps = 147/496 (29%)

Query: 78  TYKEVYEEVLQIVSALRASGAEPGCRVGIYGANCPQWVEAMEACNALSLICVPLYDTLGP 137
           TY E+ E+   +   L A G   G  V +   N   +V A+ A   +    + L      
Sbjct: 76  TYAELDEQSNALARGLLALGVRAGDGVAVLARNHRGFVLALYAAGKVGARIILLNTGFSG 135

Query: 138 GAVNFILDHAEIDFVFVQDKKVKELLSPDCRSAQRLRVMVCFTSLTAEQKEMAVQTGIKP 197
             +  +     +    V D +  +LLS       RLR                       
Sbjct: 136 PQLAEVAAREGVK-ALVYDDEFTDLLSALPPDLGRLRAWGGNPDDDEPSGS--------- 185

Query: 198 YSWDEFLHLGKVNEMEILP--PQPFNICTIMYTSGTSGDPKGVVLTHETIATFVSGVDLF 255
            + +    L   +    LP  P+P  I  ++ TSGT+G PKG      +           
Sbjct: 186 -TDETLDDLIAGSSTAPLPKPPKPGGI--VILTSGTTGTPKGAPRPEPS----------- 231

Query: 256 LDQFEDKMTVDDVYLSFLPLAHILDRVIEEYFFRRGASV----------GYYHGDLNALR 305
                             PLA +L RV     FR G +           G+ H  L    
Sbjct: 232 ---------------PLAPLAGLLSRVP----FRAGETTLLPAPMFHATGWAHLTLA--- 269

Query: 306 DDLMELKPTLLAGVPRVFEKIHEGIKKALEELRPLRRRIFDA------LYKYKLAWMNMG 359
              M L  T+      V                   RR FD       + K+K   +   
Sbjct: 270 ---MALGSTV------VL------------------RRRFDPEATLEDIAKHKATAL--- 299

Query: 360 YKQREASP-----LADLLAFRKVKARLG-GRLRLVISGGAPLSTEV-----EEFLRVTCC 408
                  P     + DL    +V A+     L+++   G+ LS E+     E F  V   
Sbjct: 300 ----VVVPVMLSRILDLGP--EVLAKYDTSSLKIIFVSGSALSPELATRALEAFGPVLY- 352

Query: 409 AFLVQGYGLTETCGPTTVCFPDEMCMV-GTAGPVSVYSELRLEEVPEMGYSPLDD----- 462
                 YG TE     T+  P+++    GT G       +++          LD+     
Sbjct: 353 ----NLYGSTE-VAFATIATPEDLAEAPGTVGRPPKGVTVKI----------LDENGNEV 397

Query: 463 PP--CGEVCVRGKTLFSGYYKNPDLTRESIIDGWFHTGDIGQILPNGVVKIIDRKKNLIK 520
           P    G + V     F GY    D   + IIDG   +GD+G    +G++ +  R  ++I 
Sbjct: 398 PRGVVGRIFVGNGFPFEGYTDGRD---KQIIDGLLSSGDVGYFDEDGLLFVDGRDDDMI- 453

Query: 521 ISQGEYVALEYLENVY 536
           +S G        ENV+
Sbjct: 454 VSGG--------ENVF 461

Length = 549

>gnl|CDD|236100 PRK07798, PRK07798, acyl-CoA synthetase; Validated

 Score = 45.3 bits (108), Expect = 8e-05
 Identities = 58/211 (27%), Positives = 78/211 (36%), Gaps = 24/211 (11%)

Query: 365 ASPLADLLAFRKVKARLGGRLRLVISGGAPLSTEV-EEFLRVTCCAFLVQGYGLTET--C 421
           A PL D  A           L  + SGGA  S  V E  L +     L    G +ET   
Sbjct: 280 ARPLLD--ALEARGPYDLSSLFAIASGGALFSPSVKEALLELLPNVVLTDSIGSSETGFG 337

Query: 422 GPTTVCF--PDEMCMVGTAGP-VSVYSELRLEEVPEMGYSPLDDPPCGEVCVRGKTLFSG 478
           G  TV            T GP   V  E      P            G +  RG  +  G
Sbjct: 338 GSGTVAKGAVHTGGPRFTIGPRTVVLDEDGNPVEP-------GSGEIGWIARRGH-IPLG 389

Query: 479 YYKNPDLTRES--IIDG--WFHTGDIGQILPNGVVKIIDRKKNLIKISQGEYVALEYLEN 534
           YYK+P+ T E+   IDG  +   GD  ++  +G + ++ R    I  + GE V  E +E 
Sbjct: 390 YYKDPEKTAETFPTIDGVRYAIPGDRARVEADGTITLLGRGSVCIN-TGGEKVFPEEVEE 448

Query: 535 VYCVAPIIEDIWVYG---DSLKSMLVAVVVP 562
                P + D  V G   +     +VAVV  
Sbjct: 449 ALKAHPDVADALVVGVPDERWGQEVVAVVQL 479

Length = 533

>gnl|CDD|102207 PRK06145, PRK06145, acyl-CoA synthetase; Validated

 Score = 44.5 bits (105), Expect = 1e-04
 Identities = 36/169 (21%), Positives = 64/169 (37%), Gaps = 22/169 (13%)

Query: 78  TYKEVYEEVLQIVSALRASGAEPGCRVGIYGANCPQWVEAMEACNALSLICVPLYDTLGP 137
           +Y E ++ +LQ    L A G   G  V +   N   ++E   A + L  + +P+   L  
Sbjct: 29  SYAEFHQRILQAAGMLHARGIGQGDVVALLMKNSAAFLELAFAASYLGAVFLPINYRLAA 88

Query: 138 GAVNFILDHAEIDFVFVQDKKVKELLSPDCRSAQRLRVMVCFTSLTAEQKEMAVQTGIKP 197
             V +IL  A    + V ++                     F ++ A +    V      
Sbjct: 89  DEVAYILGDAGAKLLLVDEE---------------------FDAIVALETPKIV-IDAAA 126

Query: 198 YSWDEFLHLGKVNEMEILPPQPFNICTIMYTSGTSGDPKGVVLTHETIA 246
            +    L  G +         P ++  +MYTSGT+  PKGV+ ++  + 
Sbjct: 127 QADSRRLAQGGLEIPPQAAVAPTDLVRLMYTSGTTDRPKGVMHSYGNLH 175

Length = 497

>gnl|CDD|236315 PRK08633, PRK08633, 2-acyl-glycerophospho-ethanolamine acyltransferase; Validated

 Score = 44.9 bits (107), Expect = 1e-04
 Identities = 21/62 (33%), Positives = 34/62 (54%), Gaps = 5/62 (8%)

Query: 216 PPQPFNICTIMYTSGTSGDPKGVVLTHETIATFVSGVDLFLDQFEDKMTVDDVYLSFLPL 275
             +P +  TI+++SG+ G+PKGV+L+H  I + +  +          +  DDV LS LP 
Sbjct: 778 TFKPDDTATIIFSSGSEGEPKGVMLSHHNILSNIEQISDVF-----NLRNDDVILSSLPF 832

Query: 276 AH 277
            H
Sbjct: 833 FH 834

Length = 1146

>gnl|CDD|236215 PRK08276, PRK08276, long-chain-fatty-acid--CoA ligase; Validated

 Score = 44.9 bits (107), Expect = 1e-04
 Identities = 51/191 (26%), Positives = 87/191 (45%), Gaps = 27/191 (14%)

Query: 385 LRLVISGGAPLSTEVEEFLRVTCCAFLVQGYGLTETCGPTTVCFPDEMCMVGTAGPVSVY 444
           LR+ I   AP   EV+  +       + + Y  +E  G T +   D +   G+ G  +V 
Sbjct: 264 LRVAIHAAAPCPVEVKRAMIDWWGPIIHEYYASSEGGGVTVITSEDWLAHPGSVGK-AVL 322

Query: 445 SELRL-----EEVP--EMG--YSPLDDPPCGEVCVRGKTLFSGYYKNPDLTRESIID-GW 494
            E+R+      E+P  E+G  Y  +D  P           F  Y+ +P+ T  +    GW
Sbjct: 323 GEVRILDEDGNELPPGEIGTVYFEMDGYP-----------FE-YHNDPEKTAAARNPHGW 370

Query: 495 FHTGDIGQILPNGVVKIIDRKKNLIKISQGEYVALEYLENVYCVAPIIEDIWVYG---DS 551
              GD+G +  +G + + DRK ++I IS G  +  + +EN+    P + D+ V+G   + 
Sbjct: 371 VTVGDVGYLDEDGYLYLTDRKSDMI-ISGGVNIYPQEIENLLVTHPKVADVAVFGVPDEE 429

Query: 552 LKSMLVAVVVP 562
           +   + AVV P
Sbjct: 430 MGERVKAVVQP 440

Length = 502

>gnl|CDD|235134 PRK03584, PRK03584, acetoacetyl-CoA synthetase; Provisional

 Score = 45.2 bits (108), Expect = 1e-04
 Identities = 56/187 (29%), Positives = 81/187 (43%), Gaps = 39/187 (20%)

Query: 78  TYKEVYEEVLQIVSALRASGAEPGCRVGIYGANCPQWVEAMEACNALSLI---CVPLYDT 134
           ++ E+  +V  + +ALRA G  PG RV  Y  N P+ V AM A  +L  I   C P +  
Sbjct: 116 SWAELRRQVAALAAALRALGVGPGDRVAAYLPNIPETVVAMLATASLGAIWSSCSPDF-- 173

Query: 135 LGPGAVNFILDH-AEI--------DFVFVQDK------KVKELLS--PDCRSAQRLRVMV 177
            G   V   LD   +I        D      K      KV EL +  P   S + + V+V
Sbjct: 174 -GVQGV---LDRFGQIEPKVLIAVDGYRYGGKAFDRRAKVAELRAALP---SLEHV-VVV 225

Query: 178 CFTSLTAEQKEMAVQTGIKPYSWDEFLHLGKVNEMEILPPQPFN--ICTIMYTSGTSGDP 235
            +          A         W++FL   +  E+E   P PF+  +  I+Y+SGT+G P
Sbjct: 226 PYL-----GPAAAAAALPGALLWEDFLAPAEAAELEFE-PVPFDHPLW-ILYSSGTTGLP 278

Query: 236 KGVVLTH 242
           K +V  H
Sbjct: 279 KCIVHGH 285

Length = 655

>gnl|CDD|236071 PRK07638, PRK07638, acyl-CoA synthetase; Validated

 Score = 44.8 bits (106), Expect = 1e-04
 Identities = 28/84 (33%), Positives = 41/84 (48%), Gaps = 1/84 (1%)

Query: 466 GEVCVRGKTLFSGYYKNPDLTRESIIDGWFHTGDIGQILPNGVVKIIDRKKNLIKISQGE 525
           G V V+    F GY     L RE   DGW    D+G     G + I+ R+KN+I +  G 
Sbjct: 334 GTVYVKSPQFFMGYIIGGVLARELNADGWMTVRDVGYEDEEGFIYIVGREKNMI-LFGGI 392

Query: 526 YVALEYLENVYCVAPIIEDIWVYG 549
            +  E +E+V    P +++I V G
Sbjct: 393 NIFPEEIESVLHEHPAVDEIVVIG 416

Length = 487

>gnl|CDD|181207 PRK08043, PRK08043, bifunctional acyl-[acyl carrier protein] synthetase/2-acylglycerophosphoethanolamine acyltransferase; Validated

 Score = 44.3 bits (105), Expect = 2e-04
 Identities = 22/64 (34%), Positives = 35/64 (54%), Gaps = 5/64 (7%)

Query: 214 ILPPQPFNICTIMYTSGTSGDPKGVVLTHETIATFVSGVDLFLDQFEDKMTVDDVYLSFL 273
            +  QP +   I++TSG+ G PKGVV +H+++   V  +    D      T +D ++S L
Sbjct: 359 QVKQQPEDAALILFTSGSEGHPKGVVHSHKSLLANVEQIKTIAD-----FTPNDRFMSAL 413

Query: 274 PLAH 277
           PL H
Sbjct: 414 PLFH 417

Length = 718

>gnl|CDD|184022 PRK13391, PRK13391, acyl-CoA synthetase; Provisional

 Score = 44.3 bits (105), Expect = 2e-04
 Identities = 48/208 (23%), Positives = 73/208 (35%), Gaps = 30/208 (14%)

Query: 78  TYKEVYEEVLQIVSALRASGAEPGCRVGIYGANCPQWVEAMEACNALSLICVPLYDTLGP 137
           TY+E+ E   ++    R+ G + G  V I+  N  +++E   A     L    +   L P
Sbjct: 26  TYRELDERSNRLAHLFRSLGLKRGDHVAIFMENNLRYLEVCWAAERSGLYYTCVNSHLTP 85

Query: 138 GAVNFILDH--AEIDFVFVQDKKVKELLSPDCRSAQRLRVMVCFTSLTAEQKEMAVQTGI 195
               +I+D   A           V   L   C    R R+++                G 
Sbjct: 86  AEAAYIVDDSGARALITSAAKLDVARALLKQC-PGVRHRLVL---------DGDGELEGF 135

Query: 196 KPYSWDEFLHLGKVNEMEILPPQPFN---ICTIM-YTSGTSGDPKGVV--LTHETIATFV 249
             Y+            +  LP  P     + T M Y+SGT+G PKG+   L  +   T +
Sbjct: 136 VGYA----------EAVAGLPATPIADESLGTDMLYSSGTTGRPKGIKRPLPEQPPDTPL 185

Query: 250 SGVDLFLDQFEDKMTVDDVYLSFLPLAH 277
                    +      D VYLS  PL H
Sbjct: 186 PLTAFLQRLW--GFRSDMVYLSPAPLYH 211

Length = 511

>gnl|CDD|213324 cd12116, A_NRPS_Ta1_like, The adenylation domain of nonribosomal peptide synthetases (NRPS), including salinosporamide A polyketide synthase

 Score = 42.9 bits (102), Expect = 4e-04
 Identities = 22/71 (30%), Positives = 33/71 (46%)

Query: 78  TYKEVYEEVLQIVSALRASGAEPGCRVGIYGANCPQWVEAMEACNALSLICVPLYDTLGP 137
           +Y E+ E   Q+ + LRA G  PG RVG+        V A+ A        VPL  +   
Sbjct: 14  SYAELDERSNQLAARLRALGVGPGDRVGVLLERSADLVAALLAILKAGAAYVPLDPSYPA 73

Query: 138 GAVNFILDHAE 148
             + ++L+ AE
Sbjct: 74  ERLQYMLEDAE 84

The adenylation (A) domain of NRPS recognizes a specific amino acid or hydroxy acid and activates it as an (amino) acyl adenylate by hydrolysis of ATP. The activated acyl moiety then forms a thioester to the enzyme-bound cofactor phosphopantetheine of a peptidyl carrier protein domain. NRPSs are large multifunctional enzymes which synthesize many therapeutically useful peptides in bacteria and fungi via a template-directed, nucleic acid independent nonribosomal mechanism. These natural products include antibiotics, immunosuppressants, plant and animal toxins, and enzyme inhibitors. NRPS has a distinct modular structure in which each module is responsible for the recognition, activation, and in some cases, modification of a single amino acid residue of the final peptide product. The modules can be subdivided into domains that catalyze specific biochemical reactions. This family includes the myxovirescin (TA) antibiotic biosynthetic gene in Myxococcus xanthus; TA production plays a role in predation. It also includes the salinosporamide A polyketide synthase which is involved in the biosynthesis of salinosporamide A, a marine microbial metabolite whose chlorine atom is crucial for potent proteasome inhibition and anticancer activity. Length = 438

>gnl|CDD|236803 PRK10946, entE, enterobactin synthase subunit E; Provisional

 Score = 43.1 bits (102), Expect = 4e-04
 Identities = 46/159 (28%), Positives = 73/159 (45%), Gaps = 20/159 (12%)

Query: 385 LRLVISGGAPLSTEVEEFLRVTC---CAFLVQGYGLTETCGPTTVCF-----PDEMCMVG 436
           L+L+  GGA LS  +    R+     C  L Q +G+ E      V +      DE     
Sbjct: 302 LKLLQVGGARLSETLAR--RIPAELGCQ-LQQVFGMAEG----LVNYTRLDDSDERIFTT 354

Query: 437 TAGPVSVYSELRLEEVPEMGYSPLDDPPCGEVCVRGKTLFSGYYKNPDLTRESI-IDGWF 495
              P+S   E+    V +   +PL     G +  RG   F GYYK+P     +   +G++
Sbjct: 355 QGRPMSPDDEVW---VADADGNPLPQGEVGRLMTRGPYTFRGYYKSPQHNASAFDANGFY 411

Query: 496 HTGDIGQILPNGVVKIIDRKKNLIKISQGEYVALEYLEN 534
            +GD+  I P+G + ++ R+K+ I    GE +A E +EN
Sbjct: 412 CSGDLVSIDPDGYITVVGREKDQIN-RGGEKIAAEEIEN 449

Length = 536

>gnl|CDD|131369 TIGR02316, propion_prpE, propionate--CoA ligase

 Score = 43.4 bits (102), Expect = 4e-04
 Identities = 50/179 (27%), Positives = 69/179 (38%), Gaps = 31/179 (17%)

Query: 78  TYKEVYEEVLQIVSALRASGAEPGCRVGIYGANCPQWVEAMEACNALSLICVPLYDTLGP 137
           TY++++ EV    SALRA G   G RV IY     + V AM AC  +  I   ++     
Sbjct: 85  TYRQLHREVNVFASALRALGVGRGDRVLIYMPMIAEAVFAMLACARIGAIHSVVFGGFAS 144

Query: 138 GAVNFILDHAEIDFVFVQDK-----KV---KELLSPDCRSAQRLRVMVCFTSLTAEQKEM 189
            ++   +D A    +   D      KV   K LL      AQ     V           +
Sbjct: 145 HSLALRIDDATPKLIVSADAGMRGGKVIPYKPLLDAAIAEAQHPPPHV-----------L 193

Query: 190 AVQTGIKP----------YSWDEFLHLGKVNEMEILPPQPFNICTIMYTSGTSGDPKGV 238
            V  G+ P          Y+     H      +E L  +      I+YTSGT+G PKGV
Sbjct: 194 LVDRGLAPMRLIPGRDVDYAALRTQHEDAQVPVEWL--ESNEPSYILYTSGTTGKPKGV 250

This family contains one of three readily separable clades of proteins in the group of acetate and propionate--CoA ligases. Characterized members of this family act on propionate. From propionyl-CoA, there is a cyclic degradation pathway: it is ligated by PrpC to the TCA cycle intermediate oxaloacetate, acted upon further by PrpD and an aconitase, then cleaved by PrpB to pyruvate and the TCA cycle intermediate succinate. Length = 628

>gnl|CDD|236443 PRK09274, PRK09274, peptide synthase; Provisional

 Score = 43.0 bits (102), Expect = 4e-04
 Identities = 43/158 (27%), Positives = 56/158 (35%), Gaps = 60/158 (37%)

Query: 385 LRLVISGGAPLSTEVEEFLRVTCCAFLVQG------YGLTETCGPTTVCFPDEM------ 432
           LR VIS GAP+   V E  R    A L         YG TE   P +     E+      
Sbjct: 290 LRRVISAGAPVPIAVIERFR----AMLPPDAEILTPYGATE-ALPISSIESREILFATRA 344

Query: 433 --------CMVG-------------TAGPVSVYSE-LRLE--EVPEMGYSPLDDPPCGEV 468
                   C VG             +  P+  + + LRL   E+             GE+
Sbjct: 345 ATDNGAGIC-VGRPVDGVEVRIIAISDAPIPEWDDALRLATGEI-------------GEI 390

Query: 469 CVRGKTLFSGYYKNPDLTRES-IIDG----WFHTGDIG 501
            V G  +   YY  P+ TR + I DG    W   GD+G
Sbjct: 391 VVAGPMVTRSYYNRPEATRLAKIPDGQGDVWHRMGDLG 428

Length = 552

>gnl|CDD|213290 cd05923, CBAL, 4-Chlorobenzoate-CoA ligase (CBAL)

 Score = 42.5 bits (100), Expect = 5e-04
 Identities = 49/203 (24%), Positives = 78/203 (38%), Gaps = 25/203 (12%)

Query: 78  TYKEVYEEVLQIVSALRASGAEPGCRVGIYGANCPQWVEAMEACNALSLICVPLYDTLGP 137
           TY E+   V  + + L A G  P  RV +   N    V A+ A + L  +         P
Sbjct: 30  TYSELRARVEGVAARLHARGVRPQQRVAVVAPNSVDAVIALLALHRLGAV---------P 80

Query: 138 GAVNFILDHAEIDFVFVQDKKVKELLSPDCRSAQRLRVMVCFTSLTAEQKEMAVQTGIKP 197
             +N  L  AEI  +  + +    +++ D +    +        + A      V  G  P
Sbjct: 81  ALMNPRLKPAEIAELIKRGEMTAAVIAVDAQVMDAIFQSGSGVRVLALGDL--VGLGE-P 137

Query: 198 YSWDEFLHLGKVNEMEILPPQPFNICTIMYTSGTSGDPKGVVLTHETIATFVSGVDLFL- 256
            S    +        E  P +P     + YTSGT+G PKG V+      + V    LF+ 
Sbjct: 138 ESAGPPI--------EDPPREPEQPAFVFYTSGTTGLPKGAVIPQRAAESRV----LFMS 185

Query: 257 DQFEDKMTVDDVYLSFLPLAHIL 279
            Q   +    +V L  +PL H++
Sbjct: 186 TQAGLRHGRHNVVLGLMPLYHVI 208

CBAL catalyzes the conversion of 4-chlorobenzoate (4-CB) to 4-chlorobenzoyl-coenzyme A (4-CB-CoA) by the two-step adenylation and thioester-forming reactions. 4-Chlorobenzoate (4-CBA) is an environmental pollutant derived from microbial breakdown of aromatic pollutants, such as polychlorinated biphenyls (PCBs), DDT, and certain herbicides. The 4-CBA degrading pathway converts 4-CBA to the metabolite 4-hydroxybezoate (4-HBA), allowing some soil-dwelling microbes to utilize 4-CBA as an alternate carbon source. This pathway consists of three chemical steps catalyzed by 4-CBA-CoA ligase, 4-CBA-CoA dehalogenase, and 4HBA-CoA thioesterase in sequential reactions. Length = 495

>gnl|CDD|236363 PRK09029, PRK09029, O-succinylbenzoic acid--CoA ligase; Provisional

 Score = 42.6 bits (101), Expect = 5e-04
 Identities = 51/209 (24%), Positives = 77/209 (36%), Gaps = 47/209 (22%)

Query: 72  GPYVWKTYKEVYEEVLQIVSALRASGAEPGCRVGIYGANCPQWVEAMEACNALSLICVPL 131
              V  T++++   + Q+ +     G   G  V + G N P+ + A  A        +PL
Sbjct: 25  NDEVL-TWQQLCARIDQLAAGFAQQGVVEGSGVALRGKNSPETLLAYLALLQCGARVLPL 83

Query: 132 YDTLGPGAVNFILDHAEIDFVFVQDKKVKELLSPDCRSAQRLRVMVCFTSLTAEQKEMAV 191
              L    +  +L    +DF  V        L  +            F++LT+       
Sbjct: 84  NPQLPQPLLEELLPSLTLDFALV--------LEGENT----------FSALTS------- 118

Query: 192 QTGIKPYSWDEFLHLGKVNEMEILPPQPFNICTIMYTSGTSGDPKGVVLTHETIATFVS- 250
                       LHL  V     +  QP  + T+  TSG++G PK  V T +  A   S 
Sbjct: 119 ------------LHLQLVEGAHAVAWQPQRLATMTLTSGSTGLPKAAVHTAQ--AHLASA 164

Query: 251 -GVDLFLDQFEDKMTVDDVYLSFLPLAHI 278
            GV L L  F    T  D +L  LPL H+
Sbjct: 165 EGV-LSLMPF----TAQDSWLLSLPLFHV 188

Length = 458

>gnl|CDD|183506 PRK12406, PRK12406, long-chain-fatty-acid--CoA ligase; Provisional

 Score = 42.8 bits (101), Expect = 5e-04
 Identities = 42/173 (24%), Positives = 69/173 (39%), Gaps = 25/173 (14%)

Query: 77  KTYKEVYEEVLQIVSALRASGAEPGCRVGIYGANCPQWVEAMEACNALSLICVPLYDTLG 136
           +++ E+ +   +    L A G  PG  V +   N   + EA  A   L    VP      
Sbjct: 12  RSFDELAQRAARAAGGLAALGVRPGDCVALLMRNDFAFFEAAYAAMRLGAYAVP------ 65

Query: 137 PGAVNFILDHAEIDFVFVQDKKVKELLS-PDCRSAQRLRVMVCFTSLTAEQ-KEMAVQTG 194
              VN+     EI ++  +D   + L++  D        +    T L+     E+A    
Sbjct: 66  ---VNWHFKPEEIAYIL-EDSGARVLIAHADLLHGLASALPAGVTVLSVPTPPEIAAAYR 121

Query: 195 IKPYS---------WDEFLHLGKVNEMEILPPQPFNICTIMYTSGTSGDPKGV 238
           I P           W+ +L   +  +   +P QP ++   +YTSGT+G PKGV
Sbjct: 122 ISPALLTPPAGAIDWEGWLAQQEPYDGPPVP-QPQSM---IYTSGTTGHPKGV 170

Length = 509

>gnl|CDD|236091 PRK07768, PRK07768, long-chain-fatty-acid--CoA ligase; Validated

 Score = 42.7 bits (101), Expect = 5e-04
 Identities = 42/172 (24%), Positives = 65/172 (37%), Gaps = 46/172 (26%)

Query: 385 LRLVISGGAPLS-TEVEEF--------LRVTCCAFLVQGYGLTET--------CG-PTTV 426
           LR  ++G  P+   +VE+         LR      ++  YG+ E         CG    V
Sbjct: 278 LRFALNGAEPIDPADVEDLLDAGARFGLRPEA---ILPAYGMAEATLAVSFSPCGAGLVV 334

Query: 427 CF--PDEMCMVGTAGPVSV------------YSELRLEEVPEMGYSPLDDPPCGEVCVRG 472
                D +  +  A P +                L +  V E G   L     G + +RG
Sbjct: 335 DEVDADLLAALRRAVPATKGNTRRLATLGPPLPGLEVRVVDEDG-QVLPPRGVGVIELRG 393

Query: 473 KTLFSGYYKNPDLTRESII-----DGWFHTGDIGQILPNGVVKIIDRKKNLI 519
           +++  GY     LT +  I     DGW  TGD+G +   G V +  R K++I
Sbjct: 394 ESVTPGY-----LTMDGFIPAQDADGWLDTGDLGYLTEEGEVVVCGRVKDVI 440

Length = 545

>gnl|CDD|184022 PRK13391, PRK13391, acyl-CoA synthetase; Provisional

 Score = 42.8 bits (101), Expect = 6e-04
 Identities = 47/183 (25%), Positives = 77/183 (42%), Gaps = 11/183 (6%)

Query: 385 LRLVISGGAPLSTEVEEFLRVTCCAFLVQGYGLTETCGPTTVCFPDEMCMVGTAGPVSVY 444
           L + I   AP   +V+E +       + + Y  TE  G T     + +   GT G   ++
Sbjct: 277 LEVAIHAAAPCPPQVKEQMIDWWGPIIHEYYAATEGLGFTACDSEEWLAHPGTVGRA-MF 335

Query: 445 SELRLEEVPEMGYSPLDDPPCGEVCVRGKTLFSGYYKNPDLTRESIID--GWFHTGDIGQ 502
            +L + +  +    P  +P  G +   G   F  Y  +P  T E+      W   GDIG 
Sbjct: 336 GDLHILD-DDGAELPPGEP--GTIWFEGGRPFE-YLNDPAKTAEARHPDGTWSTVGDIGY 391

Query: 503 ILPNGVVKIIDRKKNLIKISQGEYVALEYLENVYCVAPIIEDIWVYG---DSLKSMLVAV 559
           +  +G + + DR   +I IS G  +  +  EN+    P + D  V+G   + L   + AV
Sbjct: 392 VDEDGYLYLTDRAAFMI-ISGGVNIYPQEAENLLITHPKVADAAVFGVPNEDLGEEVKAV 450

Query: 560 VVP 562
           V P
Sbjct: 451 VQP 453

Length = 511

>gnl|CDD|233316 TIGR01217, ac_ac_CoA_syn, acetoacetyl-CoA synthase

 Score = 42.6 bits (100), Expect = 6e-04
 Identities = 46/177 (25%), Positives = 73/177 (41%), Gaps = 24/177 (13%)

Query: 78  TYKEVYEEVLQIVSALRASGAEPGCRVGIYGANCPQWVEAMEACNALSLI---CVPLYDT 134
           T+ E+  +V  + +ALRA G  PG RV  Y  N PQ V AM A  ++  I   C P +  
Sbjct: 116 TWAELRRQVASLAAALRALGVRPGDRVSGYLPNIPQAVVAMLATASVGAIWSSCSPDF-- 173

Query: 135 LGPGAVNFILD---HAEIDFVFVQD--------KKVKELLSPDCRSAQRLRVMVCFTSLT 183
                   +LD     E   +F  D           ++ ++   +    LR +V    L 
Sbjct: 174 ----GARGVLDRFQQIEPKLLFTVDGYRYNGKEHDRRDKVAEVRKELPTLRAVVHIPYLG 229

Query: 184 AEQKEMAVQTGIKPYSWDEFLHLGKVNEMEILPPQPF-NICTIMYTSGTSGDPKGVV 239
             + E     G      ++F    +  E+      PF +   I+++SGT+G PK +V
Sbjct: 230 PRETEAPKIDG--ALDLEDFTAAAQAAELV-FEQLPFDHPLWILFSSGTTGLPKCIV 283

This enzyme catalyzes the first step of the mevalonate pathway of IPP biosynthesis. Most bacteria do not use this pathway, but rather the deoxyxylulose pathway [Central intermediary metabolism, Other]. Length = 652

>gnl|CDD|213306 cd05940, FATP_FACS, Fatty acid transport proteins (FATP) play dual roles as fatty acid transporters and its activation enzymes

 Score = 42.2 bits (100), Expect = 7e-04
 Identities = 39/185 (21%), Positives = 70/185 (37%), Gaps = 27/185 (14%)

Query: 384 RLRLVISGGAPLSTEV-EEFLRVTCCAFLVQGYGLTETCGPTTVCFPDEMCMVGTAGPVS 442
            LR +I  G  L  ++ +EF        +V+ YG TE      +   +     G  G + 
Sbjct: 197 PLRKII--GNGLRPDIWDEFKERFGVPRIVEFYGSTE-GNVGFINLFN---KPGAVGRLP 250

Query: 443 VYSELRLEEVPEMGYSPLDDPP--C--------GEVCVRGKTL--FSGYYKNPDLTRESI 490
             + + + +       P+ D    C        G +         F GY  +    ++ +
Sbjct: 251 -PAAIAVVKYDVETEEPIRDANGFCIKVPPGEVGLLLGEITDRNPFDGYTDDEATEKKIL 309

Query: 491 I------DGWFHTGDIGQILPNGVVKIIDRKKNLIKISQGEYVALEYLENVYCVAPIIED 544
                  D +F+TGD+ +    G    +DR  +  +  +GE V+   +E V    P +E+
Sbjct: 310 RDVFKKGDAYFNTGDLVRRDGFGYFYFVDRLGDTFRW-KGENVSTTEVEEVLAKHPGVEE 368

Query: 545 IWVYG 549
             VYG
Sbjct: 369 ANVYG 373

Fatty acid transport protein (FATP) transports long-chain or very-long-chain fatty acids across the plasma membrane. FATPs also have fatty acid CoA synthetase activity, thus playing dual roles as fatty acid transporters and its activation enzymes. At least five copies of FATPs are identified in mammalian cells. This family also includes prokaryotic FATPs. FATPs are the key players in the trafficking of exogenous fatty acids into the cell and in intracellular fatty acid homeostasis. Length = 444

>gnl|CDD|213324 cd12116, A_NRPS_Ta1_like, The adenylation domain of nonribosomal peptide synthetases (NRPS), including salinosporamide A polyketide synthase

 Score = 41.4 bits (98), Expect = 0.001
 Identities = 16/64 (25%), Positives = 27/64 (42%), Gaps = 18/64 (28%)

Query: 225 IMYTSGTSGDPKGVVLTHETIATFVSGVDLFLDQFEDKMTVDDVYLS------------- 271
           ++YTSG++G PKGV ++H  +  F+  +          +   D  L+             
Sbjct: 98  VIYTSGSTGKPKGVEVSHRALVNFLLSM-----ARRPGLGASDRLLAVTTISFDISVLEL 152

Query: 272 FLPL 275
            LPL
Sbjct: 153 LLPL 156

The adenylation (A) domain of NRPS recognizes a specific amino acid or hydroxy acid and activates it as an (amino) acyl adenylate by hydrolysis of ATP. The activated acyl moiety then forms a thioester to the enzyme-bound cofactor phosphopantetheine of a peptidyl carrier protein domain. NRPSs are large multifunctional enzymes which synthesize many therapeutically useful peptides in bacteria and fungi via a template-directed, nucleic acid independent nonribosomal mechanism. These natural products include antibiotics, immunosuppressants, plant and animal toxins, and enzyme inhibitors. NRPS has a distinct modular structure in which each module is responsible for the recognition, activation, and in some cases, modification of a single amino acid residue of the final peptide product. The modules can be subdivided into domains that catalyze specific biochemical reactions. This family includes the myxovirescin (TA) antibiotic biosynthetic gene in Myxococcus xanthus; TA production plays a role in predation. It also includes the salinosporamide A polyketide synthase which is involved in the biosynthesis of salinosporamide A, a marine microbial metabolite whose chlorine atom is crucial for potent proteasome inhibition and anticancer activity. Length = 438

>gnl|CDD|236668 PRK10252, entF, enterobactin synthase subunit F; Provisional

 Score = 42.3 bits (100), Expect = 0.001
 Identities = 38/174 (21%), Positives = 66/174 (37%), Gaps = 41/174 (23%)

Query: 78  TYKEVYEEVLQIVSALRASGAEPGCRVGIYGANCPQWVEAMEACNALSLICVPLYDTLGP 137
           +Y+E+ E+V+ + + LR  G +PG  V +     P+ V        L+L    L+  +  
Sbjct: 485 SYREMREQVVALANLLRERGVKPGDSVAV---ALPRSVF-------LTLA---LHAIVEA 531

Query: 138 GAVNFILDHAEIDFVFVQDKKVKELLSPDCRSAQRLRVM------VCFTSLTAEQKEMAV 191
           GA    LD                   PD     RL++M          +   +    A 
Sbjct: 532 GAAWLPLDTGY----------------PD----DRLKMMLEDARPSLLITTADQLPRFAD 571

Query: 192 QTGIKPYSWDEFLHLGKVNEMEILPPQPFNICTIMYTSGTSGDPKGVVLTHETI 245
              +    ++  L       +     QP +   I++TSG++G PKGV++    I
Sbjct: 572 VPDLTSLCYNAPLAPQGAAPL--QLSQPHHTAYIIFTSGSTGRPKGVMVGQTAI 623

Length = 1296

>gnl|CDD|213313 cd05966, ACS, Acetyl-CoA synthetase (also known as acetate-CoA ligase and acetyl-activating enzyme)

 Score = 41.8 bits (99), Expect = 0.001
 Identities = 18/44 (40%), Positives = 26/44 (59%)

Query: 78  TYKEVYEEVLQIVSALRASGAEPGCRVGIYGANCPQWVEAMEAC 121
           TY+E+Y EV +  + L++ G + G RV IY    P+   AM AC
Sbjct: 80  TYRELYREVCRFANVLKSLGVKKGDRVAIYMPMIPELPIAMLAC 123

Acetyl-CoA synthetase (ACS) catalyzes the formation of acetyl-CoA from acetate, CoA, and ATP. Synthesis of acetyl-CoA is carried out in a two-step reaction. In the first step, the enzyme catalyzes the synthesis of acetyl-AMP intermediate from acetate and ATP. In the second step, acetyl-AMP reacts with CoA to produce acetyl-CoA. This enzyme is widely present in all living organisms. The activity of this enzyme is crucial for maintaining the required levels of acetyl-CoA, a key intermediate in many important biosynthetic and catabolic processes. Acetyl-CoA is used in the biosynthesis of glucose, fatty acids, and cholesterol. It can also be used in the production of energy in the citric acid cycle. Eukaryotes typically have two isoforms of acetyl-CoA synthetase, a cytosolic form involved in biosynthetic processes and a mitochondrial form primarily involved in energy generation. Length = 602

>gnl|CDD|139538 PRK13390, PRK13390, acyl-CoA synthetase; Provisional

 Score = 41.1 bits (96), Expect = 0.001
 Identities = 44/172 (25%), Positives = 73/172 (42%), Gaps = 16/172 (9%)

Query: 385 LRLVISGGAPLSTEVEEFLRVTCCAFLVQGYGLTETCGPTTVCFPDEMCMVGTAGPVSVY 444
           LR VI   AP   +V+  +       + + Y  TE  G T +  PD +   G+ G  SV 
Sbjct: 272 LRAVIHAAAPCPVDVKHAMIDWLGPIVYEYYSSTEAHGMTFIDSPDWLAHPGSVGR-SVL 330

Query: 445 SELRLEEVPEMGYSPLDDPPCGEVCV----RGKTLFSGYYKNPDLTRESIIDG---WFHT 497
            +L + +         ++ P G +      R +  F  Y  +P+ T  +       W   
Sbjct: 331 GDLHICD------DDGNELPAGRIGTVYFERDRLPFR-YLNDPEKTAAAQHPAHPFWTTV 383

Query: 498 GDIGQILPNGVVKIIDRKKNLIKISQGEYVALEYLENVYCVAPIIEDIWVYG 549
           GD+G +  +G + + DRK  +I IS G  +  +  EN   + P + D+ V G
Sbjct: 384 GDLGSVDEDGYLYLADRKSFMI-ISGGVNIYPQETENALTMHPAVHDVAVIG 434

Length = 501

>gnl|CDD|213319 cd05972, MACS_like, Medium-chain acyl-CoA synthetase (MACS or ACSM)

 Score = 40.8 bits (96), Expect = 0.002
 Identities = 24/117 (20%), Positives = 42/117 (35%), Gaps = 15/117 (12%)

Query: 77  KTYKEVYEEVLQIVSALRASGAEPGCRVGIYGANCPQWVEAMEACNALSLICVPLYDTLG 136
            T+ E+ EE  +  + L+  G   G RV +     P+    +  C  L  + +P    LG
Sbjct: 1   WTFAELKEESDRAANFLKDLGVGRGDRVAVLLPRVPELWAVILGCIKLGAVFIPGTTQLG 60

Query: 137 PGAVNFILDHAEIDFVFVQDKKVKELLSPDCRSAQRLRVMVCFTSLTAEQKEMAVQT 193
           P  + + L+ A    +                       ++ FTS T    +M + T
Sbjct: 61  PKDIRYRLERAGARAIVTSADDP---------------ALLYFTSGTTGLPKMVLHT 102

MACS catalyzes the two-step activation of medium chain fatty acids (containing 4-12 carbons). The carboxylate substrate first reacts with ATP to form an acyl-adenylate intermediate, which then reacts with CoA to produce an acyl-CoA ester. The acyl-CoA is a key intermediate in many important biosynthetic and catabolic processes. Length = 430

>gnl|CDD|213318 cd05971, MACS_like_3, Uncharacterized subfamily of medium-chain acyl-CoA synthetase (MACS)

 Score = 40.8 bits (96), Expect = 0.002
 Identities = 23/71 (32%), Positives = 34/71 (47%)

Query: 78  TYKEVYEEVLQIVSALRASGAEPGCRVGIYGANCPQWVEAMEACNALSLICVPLYDTLGP 137
           T+ ++ +   ++ +ALR  G E G RVG+Y    P+   A  A   L  + VPL    GP
Sbjct: 8   TFGQLKDASNRLANALRELGVERGDRVGVYLPQSPETAIAHLAVYKLGAVSVPLSVLFGP 67

Query: 138 GAVNFILDHAE 148
            AV   L  + 
Sbjct: 68  DAVEHRLRDSG 78

MACS catalyzes the two-step activation of medium chain fatty acids (containing 4-12 carbons). The carboxylate substrate first reacts with ATP to form an acyl-adenylate intermediate, which then reacts with CoA to produce an acyl-CoA ester. MACS enzymes are localized to mitochondria. Length = 439

>gnl|CDD|213306 cd05940, FATP_FACS, Fatty acid transport proteins (FATP) play dual roles as fatty acid transporters and its activation enzymes

 Score = 40.7 bits (96), Expect = 0.002
 Identities = 20/58 (34%), Positives = 25/58 (43%), Gaps = 9/58 (15%)

Query: 222 ICTIMYTSGTSGDPKGVVLTHE--TIATFVSGVDLFLDQFEDKMTVDDVYLSFLPLAH 277
               +YTSGT+G PK  +++H     A  V G    L         DDV    LPL H
Sbjct: 83  PAFYIYTSGTTGLPKAAIMSHRRWLRAGAVFGGLGLLKP-------DDVLYLCLPLYH 133

Fatty acid transport protein (FATP) transports long-chain or very-long-chain fatty acids across the plasma membrane. FATPs also have fatty acid CoA synthetase activity, thus playing dual roles as fatty acid transporters and its activation enzymes. At least five copies of FATPs are identified in mammalian cells. This family also includes prokaryotic FATPs. FATPs are the key players in the trafficking of exogenous fatty acids into the cell and in intracellular fatty acid homeostasis. Length = 444

>gnl|CDD|213303 cd05937, FATP_chFAT1_like, Uncharacterized subfamily of bifunctional fatty acid transporter/very-long-chain acyl-CoA synthetase in fungi

 Score = 41.3 bits (97), Expect = 0.002
 Identities = 28/102 (27%), Positives = 47/102 (46%), Gaps = 14/102 (13%)

Query: 459 PLDDPPCGEVCVR----GKTLFSGYYKNPDLTRESII-------DGWFHTGDIGQILPNG 507
           P+ +P  GE+  R     + LF GY KN D T   ++       D W+ TGD+ +   +G
Sbjct: 295 PVGEP--GEMLGRVRFKNRELFQGYLKNEDATESKLLRDVFRKGDIWYRTGDLLRQDADG 352

Query: 508 VVKIIDRKKNLIKISQGEYVALEYLENVYCVAPIIEDIWVYG 549
               +DR  +  +  + E V+   + +V    P + +  VYG
Sbjct: 353 RWYFLDRLGDTFRW-KSENVSTGEVADVLGAIPSVAEANVYG 393

Fatty acid transport protein (FATP) transports long-chain or very-long-chain fatty acids across the plasma membrane. FATPs also have fatty acid CoA synthetase activity, thus playing dual roles as fatty acid transporters and its activation enzymes. FATPs are the key players in the trafficking of exogenous fatty acids into the cell and in intracellular fatty acid homeostasis. Members of this family are fungal FATPs, including FAT1 from Cochliobolus heterostrophus. Length = 468

>gnl|CDD|181109 PRK07769, PRK07769, long-chain-fatty-acid--CoA ligase; Validated

 Score = 40.9 bits (96), Expect = 0.002
 Identities = 54/199 (27%), Positives = 78/199 (39%), Gaps = 45/199 (22%)

Query: 93  LRASGA------EPGCRVGIYGANCPQWVE-------AMEACNALSLICVPLYDTLGPGA 139
            RA GA      +PG RV I     PQ ++       A+ A      I VPL+D   PG 
Sbjct: 65  NRAVGARLQQVTKPGDRVAIL---APQNLDYLIAFFGALYAGR----IAVPLFDPAEPGH 117

Query: 140 VNFILDHAEIDFVFVQDKKVKELLSPDCRSAQRLRVMVCFTSLTAEQKEMAVQTGIKPYS 199
           V  +  HA +D     D     +L+    SA+ +R    F +  A+++   +     P  
Sbjct: 118 VGRL--HAVLD-----DCTPSAILTTT-DSAEGVRKF--FRARPAKERPRVIAVDAVPDE 167

Query: 200 WDEFLHLGKVNEMEILP-PQPFNICTIMYTSGTSGDPKGVVLTHETIATFVSGVDLFLDQ 258
                    V    + P      I  + YTSG++  P GV +TH  + T V  V   L+ 
Sbjct: 168 ---------VGATWVPPEANEDTIAYLQYTSGSTRIPAGVQITHLNLPTNVLQVIDALEG 218

Query: 259 FEDKMTVDDVYLSFLPLAH 277
            E    V     S+LP  H
Sbjct: 219 QEGDRGV-----SWLPFFH 232

Length = 631

>gnl|CDD|235564 PRK05691, PRK05691, peptide synthase; Validated

 Score = 41.3 bits (97), Expect = 0.002
 Identities = 52/209 (24%), Positives = 81/209 (38%), Gaps = 39/209 (18%)

Query: 78  TYKEVYEEVLQIVSALRASGAEPGCRVGIYGANCPQWVEAMEACNALSLICVPLYDTLGP 137
           +Y+++      I +AL+A  A  G R  +   + P +V A   C    +I VP Y    P
Sbjct: 42  SYRDLDLRARTIAAALQAR-ASFGDRAVLLFPSGPDYVAAFFGCLYAGVIAVPAYP---P 97

Query: 138 GAVN--------FILDHAEIDFVFVQDKKVKELLSPDCRSAQRLRVMVCFTSLTAEQKEM 189
            +           I+  AE   +         LL  +  +A     ++C  +L     E 
Sbjct: 98  ESARRHHQERLLSIIADAEPRLLLTVADLRDSLLQMEELAAANAPELLCVDTLDPALAE- 156

Query: 190 AVQTGIKPYSWDEFLHLGKVNEMEILPP-QPFNICTIMYTSGTSGDPKGVVLTHETIATF 248
                    +W E             P  QP +I  + YTSG++  PKGV ++H      
Sbjct: 157 ---------AWQE-------------PALQPDDIAFLQYTSGSTALPKGVQVSH---GNL 191

Query: 249 VSGVDLFLDQFEDKMTVDDVYLSFLPLAH 277
           V+   L    F   +  DDV +S+LPL H
Sbjct: 192 VANEQLIRHGFGIDLNPDDVIVSWLPLYH 220

Length = 4334

>gnl|CDD|213310 cd05945, DltA, D-alanine:D-alanyl carrier protein ligase (DltA)

 Score = 40.3 bits (95), Expect = 0.003
 Identities = 15/44 (34%), Positives = 21/44 (47%)

Query: 78  TYKEVYEEVLQIVSALRASGAEPGCRVGIYGANCPQWVEAMEAC 121
           TY E+ E   ++ + L A G   G  V +YG   P    A+ AC
Sbjct: 18  TYAELKERADRLAARLLALGGRAGDPVAVYGHKSPDAYAAILAC 61

DltA belongs to the class I AMP-forming adenylation domain superfamily, which also includes acetyl-CoA synthetase, luciferase, and the adenylation domains of non-ribosomal synthetases. It catalyzes the two-step activation reaction of D-alanine: the formation of a substrate-AMP molecule as an intermediate, and then the transfer of the amino acid adenylate to teichoic acid in the biosynthesis of lipoteichoic acid (LTA) and wall teichoic acid (WTA) in gram-positive bacteria. Length = 447

>gnl|CDD|235625 PRK05852, PRK05852, acyl-CoA synthetase; Validated

 Score = 40.3 bits (94), Expect = 0.003
 Identities = 43/179 (24%), Positives = 67/179 (37%), Gaps = 19/179 (10%)

Query: 78  TYKEVYEEVLQIVSALRASGAEPGCRVGIYGANCPQWVEAMEACNALSLICVPLYDTLGP 137
           +Y+++   V  +   L  SG  PG RV +   +  ++V A+ A +   L+ VPL D   P
Sbjct: 45  SYRDLARLVDDLAGQLTRSGLLPGDRVALRMGSNAEFVVALLAASRADLVVVPL-DPALP 103

Query: 138 GAVNFILDHAEIDFVFVQDKKVKELLSPDCRSAQRLRVMVCFTSLTAEQKEMAVQTGIKP 197
            A   +   A    V + D        P  R+    R      ++  +         +  
Sbjct: 104 IAEQRVRSQAAGARVVLIDA-----DGPHDRAEPTTRWWPLTVNVGGDSGPSGGTLSV-- 156

Query: 198 YSWDEFLHLGKVNEMEILPPQPFNI----CTIMYTSGTSGDPKGVVLTHETIATFVSGV 252
                  HL    E       P  +      IM+T GT+G PK V  TH  IA+ V  +
Sbjct: 157 -------HLDAATEPTPATSTPEGLRPDDAMIMFTGGTTGLPKMVPWTHANIASSVRAI 208

Length = 534

>gnl|CDD|237054 PRK12316, PRK12316, peptide synthase; Provisional

 Score = 40.3 bits (94), Expect = 0.004
 Identities = 41/172 (23%), Positives = 64/172 (37%), Gaps = 25/172 (14%)

Query: 78  TYKEVYEEVLQIVSALRASGAEPGCRVGIYGANCPQWVEAMEACNALSLICVPLYDTLGP 137
            Y E+     ++  AL   G  P   VG+      + V A+ A        VPL D   P
Sbjct: 538 DYAELNRRANRLAHALIERGVGPDVLVGVAMERSIEMVVALLAILKAGGAYVPL-DPEYP 596

Query: 138 GAVNFILDHAEIDFVFVQDKKVKELLSPDCRSAQRLRVMVCFTSLTAEQKEMAVQTGIKP 197
                    AE     ++D  V+ LLS           +     L A  + + +    +P
Sbjct: 597 ---------AERLAYMLEDSGVQLLLSQ--------SHLGRKLPLAAGVQVLDLD---RP 636

Query: 198 YSWDEFLHLGKVNEMEILPPQPFNICTIMYTSGTSGDPKGVVLTHETIATFV 249
            +W E    G   E       P N+  ++YTSG++G PKG    H  ++  +
Sbjct: 637 AAWLE----GYSEENPGTELNPENLAYVIYTSGSTGKPKGAGNRHRALSNRL 684

Length = 5163

>gnl|CDD|234677 PRK00174, PRK00174, acetyl-CoA synthetase; Provisional

 Score = 40.1 bits (95), Expect = 0.004
 Identities = 18/44 (40%), Positives = 27/44 (61%)

Query: 78  TYKEVYEEVLQIVSALRASGAEPGCRVGIYGANCPQWVEAMEAC 121
           TY+E++ EV +  +AL++ G + G RV IY    P+   AM AC
Sbjct: 100 TYRELHREVCRFANALKSLGVKKGDRVAIYMPMIPEAAVAMLAC 143

Length = 637

>gnl|CDD|215553 PLN03052, PLN03052, acetate--CoA ligase; Provisional

 Score = 40.1 bits (94), Expect = 0.004
 Identities = 50/179 (27%), Positives = 84/179 (46%), Gaps = 20/179 (11%)

Query: 78  TYKEVYEEVLQIVSALRASGAEPGCRVGIYGANCPQWVEAMEACNALSL---ICVPLYDT 134
           T  E+  +V ++ +AL A G E G  + I   + P  V A+    A+ L   + V + D+
Sbjct: 210 TLSELRSQVSRVANALDALGFEKGDAIAI---DMPMNVHAVIIYLAIILAGCVVVSIADS 266

Query: 135 LGPGAVNFILDHAEIDFVFVQDKKV---KEL-LSPDCRSAQRLRVMVCFTSLTAEQKEMA 190
             P  +   L  ++   +F QD  V   K + L      A+  + +V    L A+ K + 
Sbjct: 267 FAPSEIATRLKISKAKAIFTQDVIVRGGKSIPLYSRVVEAKAPKAIV----LPADGKSVR 322

Query: 191 VQTGIKPYSWDEFL----HLGKVNEMEILPPQPFNICT-IMYTSGTSGDPKGVVLTHET 244
           V+      SWD+FL     L + +E + +  QP    T I+++SGT+G+PK +  T  T
Sbjct: 323 VKLREGDMSWDDFLARANGLRRPDEYKAVE-QPVEAFTNILFSSGTTGEPKAIPWTQLT 380

Length = 728

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	660
PLN02614	666	long-chain acyl-CoA synthetase	100.0
PLN02430	660	long-chain-fatty-acid-CoA ligase	100.0
KOG1256	691	consensus Long-chain acyl-CoA synthetases (AMP-for	100.0
PLN02861	660	long-chain-fatty-acid-CoA ligase	100.0
PLN02736	651	long-chain acyl-CoA synthetase	100.0
PLN02387	696	long-chain-fatty-acid-CoA ligase family protein	100.0
PTZ00342	746	acyl-CoA synthetase; Provisional	100.0
KOG1180	678	consensus Acyl-CoA synthetase [Lipid transport and	100.0
PTZ00216	700	acyl-CoA synthetase; Provisional	100.0
COG1022	613	FAA1 Long-chain acyl-CoA synthetases (AMP-forming)	100.0
KOG1176	537	consensus Acyl-CoA synthetase [Lipid transport and	100.0
KOG1177	596	consensus Long chain fatty acid acyl-CoA ligase [L	100.0
COG0365	528	Acs Acyl-coenzyme A synthetases/AMP-(fatty) acid l	100.0
COG0318	534	CaiC Acyl-CoA synthetases (AMP-forming)/AMP-acid l	100.0
PRK08180	614	feruloyl-CoA synthase; Reviewed	100.0
PTZ00237	647	acetyl-CoA synthetase; Provisional	100.0
PRK12582	624	acyl-CoA synthetase; Provisional	100.0
PLN02860	563	o-succinylbenzoate-CoA ligase	100.0
PLN02654	666	acetate-CoA ligase	100.0
TIGR02316	628	propion_prpE propionate--CoA ligase. This family c	100.0
PRK06334	539	long chain fatty acid--[acyl-carrier-protein] liga	100.0
TIGR02188	625	Ac_CoA_lig_AcsA acetate--CoA ligase. This model de	100.0
PRK07788	549	acyl-CoA synthetase; Validated	100.0
PRK07529	632	AMP-binding domain protein; Validated	100.0
PRK00174	637	acetyl-CoA synthetase; Provisional	100.0
PRK04319	570	acetyl-CoA synthetase; Provisional	100.0
COG1021	542	EntE Peptide arylation enzymes [Secondary metaboli	100.0
PRK13295	547	cyclohexanecarboxylate-CoA ligase; Reviewed	100.0
PRK05857	540	acyl-CoA synthetase; Validated	100.0
PRK10524	629	prpE propionyl-CoA synthetase; Provisional	100.0
PRK03584	655	acetoacetyl-CoA synthetase; Provisional	100.0
PRK09274	552	peptide synthase; Provisional	100.0
TIGR01217	652	ac_ac_CoA_syn acetoacetyl-CoA synthase. This enzym	100.0
PLN02574	560	4-coumarate--CoA ligase-like	100.0
PRK05677	562	long-chain-fatty-acid--CoA ligase; Validated	100.0
PRK03640	483	O-succinylbenzoic acid--CoA ligase; Provisional	100.0
PRK05605	573	long-chain-fatty-acid--CoA ligase; Validated	100.0
PLN03052	728	acetate--CoA ligase; Provisional	100.0
PLN02246	537	4-coumarate--CoA ligase	100.0
PRK08314	546	long-chain-fatty-acid--CoA ligase; Validated	100.0
PRK06839	496	acyl-CoA synthetase; Validated	100.0
PRK13382	537	acyl-CoA synthetase; Provisional	100.0
PRK05620	576	long-chain-fatty-acid--CoA ligase; Validated	100.0
PRK07656	513	long-chain-fatty-acid--CoA ligase; Validated	100.0
PRK05852	534	acyl-CoA synthetase; Validated	100.0
PRK07638	487	acyl-CoA synthetase; Validated	100.0
PRK06155	542	crotonobetaine/carnitine-CoA ligase; Provisional	100.0
PRK07008	539	long-chain-fatty-acid--CoA ligase; Validated	100.0
PLN03102	579	acyl-activating enzyme; Provisional	100.0
PRK06187	521	long-chain-fatty-acid--CoA ligase; Validated	100.0
PRK08008	517	caiC putative crotonobetaine/carnitine-CoA ligase;	100.0
PRK06060	705	acyl-CoA synthetase; Validated	100.0
TIGR03443	1389	alpha_am_amid L-aminoadipate-semialdehyde dehydrog	100.0
PRK08316	523	acyl-CoA synthetase; Validated	100.0
TIGR03208	538	cyc_hxne_CoA_lg cyclohexanecarboxylate-CoA ligase.	100.0
PRK07769	631	long-chain-fatty-acid--CoA ligase; Validated	100.0
PRK07786	542	long-chain-fatty-acid--CoA ligase; Validated	100.0
TIGR02275	527	DHB_AMP_lig 2,3-dihydroxybenzoate-AMP ligase. Prot	100.0
PRK07470	528	acyl-CoA synthetase; Validated	100.0
PRK08043	718	bifunctional acyl-[acyl carrier protein] synthetas	100.0
PRK06087	547	short chain acyl-CoA synthetase; Reviewed	100.0
PLN02330	546	4-coumarate--CoA ligase-like 1	100.0
PRK06145	497	acyl-CoA synthetase; Validated	100.0
PRK12583	558	acyl-CoA synthetase; Provisional	100.0
PRK07514	504	malonyl-CoA synthase; Validated	100.0
PRK06188	524	acyl-CoA synthetase; Validated	100.0
PRK12476	612	putative fatty-acid--CoA ligase; Provisional	100.0
PTZ00297	1452	pantothenate kinase; Provisional	100.0
PRK10946	536	entE enterobactin synthase subunit E; Provisional	100.0
PRK08315	559	AMP-binding domain protein; Validated	100.0
PRK08633	1146	2-acyl-glycerophospho-ethanolamine acyltransferase	100.0
PRK06018	542	putative acyl-CoA synthetase; Provisional	100.0
PRK05851	525	long-chain-fatty-acid--[acyl-carrier-protein] liga	100.0
TIGR03098	515	ligase_PEP_1 acyl-CoA ligase (AMP-forming), exosor	100.0
PRK12492	562	long-chain-fatty-acid--CoA ligase; Provisional	100.0
PRK06164	540	acyl-CoA synthetase; Validated	100.0
PRK07867	529	acyl-CoA synthetase; Validated	100.0
PLN02479	567	acetate-CoA ligase	100.0
PRK12467	3956	peptide synthase; Provisional	100.0
PRK08279	600	long-chain-acyl-CoA synthetase; Validated	100.0
PRK07059	557	Long-chain-fatty-acid--CoA ligase; Validated	100.0
PRK09088	488	acyl-CoA synthetase; Validated	100.0
PRK13388	540	acyl-CoA synthetase; Provisional	100.0
TIGR03205	541	pimA dicarboxylate--CoA ligase PimA. PimA, a membe	100.0
TIGR01734	502	D-ala-DACP-lig D-alanine--poly(phosphoribitol) lig	100.0
KOG1175	626	consensus Acyl-CoA synthetase [Lipid transport and	100.0
PRK06710	563	long-chain-fatty-acid--CoA ligase; Validated	100.0
TIGR02262	508	benz_CoA_lig benzoate-CoA ligase family. Character	100.0
PRK06178	567	acyl-CoA synthetase; Validated	100.0
PRK10252	1296	entF enterobactin synthase subunit F; Provisional	100.0
PRK08751	560	putative long-chain fatty acyl CoA ligase; Provisi	100.0
PRK12467	3956	peptide synthase; Provisional	100.0
PRK12316	5163	peptide synthase; Provisional	100.0
PRK13383	516	acyl-CoA synthetase; Provisional	100.0
PRK07445	452	O-succinylbenzoic acid--CoA ligase; Reviewed	100.0
PRK07787	471	acyl-CoA synthetase; Validated	100.0
PRK04813	503	D-alanine--poly(phosphoribitol) ligase subunit 1;	100.0
PRK08974	560	long-chain-fatty-acid--CoA ligase; Validated	100.0
PRK12316	5163	peptide synthase; Provisional	100.0
PRK13390	501	acyl-CoA synthetase; Provisional	100.0
PRK09029	458	O-succinylbenzoic acid--CoA ligase; Provisional	100.0
PRK06814	1140	acylglycerophosphoethanolamine acyltransferase; Pr	100.0
PRK08162	545	acyl-CoA synthetase; Validated	100.0
PRK05691	4334	peptide synthase; Validated	100.0
PRK09192	579	acyl-CoA synthetase; Validated	100.0
PRK13391	511	acyl-CoA synthetase; Provisional	100.0
PRK07798	533	acyl-CoA synthetase; Validated	100.0
PLN03051	499	acyl-activating enzyme; Provisional	100.0
PRK08276	502	long-chain-fatty-acid--CoA ligase; Validated	100.0
PRK05850	578	acyl-CoA synthetase; Validated	100.0
PRK05691	4334	peptide synthase; Validated	100.0
PRK12406	509	long-chain-fatty-acid--CoA ligase; Provisional	100.0
PRK07868	994	acyl-CoA synthetase; Validated	100.0
TIGR01923	436	menE O-succinylbenzoate-CoA ligase. This model rep	100.0
PRK07768	545	long-chain-fatty-acid--CoA ligase; Validated	100.0
PRK08308	414	acyl-CoA synthetase; Validated	100.0
PF00501	417	AMP-binding: AMP-binding enzyme; InterPro: IPR0008	100.0
KOG1179	649	consensus Very long-chain acyl-CoA synthetase/fatt	100.0
TIGR01733	408	AA-adenyl-dom amino acid adenylation domain. This	100.0
PRK07824	358	O-succinylbenzoic acid--CoA ligase; Provisional	100.0
COG1020	642	EntF Non-ribosomal peptide synthetase modules and	100.0
KOG3628	1363	consensus Predicted AMP-binding protein [General f	100.0
TIGR02372	386	4_coum_CoA_lig 4-coumarate--CoA ligase, photoactiv	100.0
TIGR02155	422	PA_CoA_ligase phenylacetate-CoA ligase. Phenylacet	100.0
KOG1178	1032	consensus Non-ribosomal peptide synthetase/alpha-a	99.97
TIGR03335	445	F390_ftsA coenzyme F390 synthetase. This enzyme, c	99.95
TIGR03089	227	conserved hypothetical protein TIGR03089. This pro	99.93
COG1541	438	PaaK Coenzyme F390 synthetase [Coenzyme metabolism	99.91
KOG3628	1363	consensus Predicted AMP-binding protein [General f	99.89
PRK09188	365	serine/threonine protein kinase; Provisional	99.76
TIGR02304	430	aden_form_hyp probable adenylate-forming enzyme. M	99.71
PF04443	365	LuxE: Acyl-protein synthetase, LuxE; InterPro: IPR	98.98
PF13193	73	AMP-binding_C: AMP-binding enzyme C-terminal domai	98.82
PF03321	528	GH3: GH3 auxin-responsive promoter; InterPro: IPR0	98.4
PLN02249	597	indole-3-acetic acid-amido synthetase	97.83
PLN02247	606	indole-3-acetic acid-amido synthetase	97.76
PLN02620	612	indole-3-acetic acid-amido synthetase	97.6
PF14535	96	AMP-binding_C_2: AMP-binding enzyme C-terminal dom	96.83
COG1541	438	PaaK Coenzyme F390 synthetase [Coenzyme metabolism	93.21

>PLN02614 long-chain acyl-CoA synthetase

Probab=100.00  E-value=3.3e-87  Score=751.27  Aligned_cols=655  Identities=51%  Similarity=0.926  Sum_probs=543.0

Q ss_pred             cccccccccCCCCCCCCCCCCCceeccccCCCCCCCCCCCCcHHHHHHHHHHhCCCCCceeeeccccCCCCCceEEeHHH
Q 006111            2 KIFAAQVEEGKEGKDGKPSVGPVYRNLLASNGFPSVDSDLNTAWDIFSMSVQKYPGNRMLGWRPFVDGKFGPYVWKTYKE   81 (660)
Q Consensus         2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ti~~~l~~~a~~~pd~~a~~~~~~~d~~~~~~~~~Ty~q   81 (660)
                      |-|-.++++++++.+..|.++++||+.....+++..+..+.|+.++|+++++++||++|+.+....++..+.++++||+|
T Consensus         5 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~~~l~~~a~~~pd~~al~~~~~~~~~~~~~~~~Ty~e   84 (666)
T PLN02614          5 KKFIFQVEEGKEGSDGRPSVGPVYRSIFAKDGFPNPIEGMDSCWDVFRMSVEKYPNNPMLGRREIVDGKPGKYVWQTYQE   84 (666)
T ss_pred             ceeEEEecccccCCCCCCCCCCcccCcccccccCCCCCCCCcHHHHHHHHHHhCCCCCeEEEecccCCCCCCcEEeEHHH
Confidence            45667999999999999999999999988888776667788999999999999999999986411022234567799999


Q ss_pred             HHHHHHHHHHHHHHcCCCCCCEEEEEeCCchhHHHHHHHHHhCCCeEEecCCCCChhHHHHHHhcccceEEEEccchhhh
Q 006111           82 VYEEVLQIVSALRASGAEPGCRVGIYGANCPQWVEAMEACNALSLICVPLYDTLGPGAVNFILDHAEIDFVFVQDKKVKE  161 (660)
Q Consensus        82 l~~~v~~lA~~L~~~Gl~~gd~V~l~~~n~~e~~~~~lA~~~~G~~~vpl~~~~~~~~l~~~l~~~~~~~ii~~~~~~~~  161 (660)
                      |.++++++|++|.+.|+++||+|+|+++|+++|++++|||+++|++++|+++.++.+++.++|++++++++|++.+....
T Consensus        85 l~~~v~~lA~~L~~~Gv~~Gd~Vai~~~n~~e~~~~~lA~~~~Gav~vpl~~~~~~~~l~~il~~~~~~~vi~~~~~~~~  164 (666)
T PLN02614         85 VYDIVIKLGNSLRSVGVKDEAKCGIYGANSPEWIISMEACNAHGLYCVPLYDTLGAGAVEFIISHSEVSIVFVEEKKISE  164 (666)
T ss_pred             HHHHHHHHHHHHHHcCCCCCCEEEEEcCCCHHHHHHHHHHHHcCCEEEEecCCCCHHHHHHHHhccCCCEEEECHHHHHH
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999998876554


Q ss_pred             hhccccccccCccEEEEecCCcHHHHHHHhhCCcceeeHHHHHhcCccCCccCCCCCCCceEEEEecCCCCCCCceeeec
Q 006111          162 LLSPDCRSAQRLRVMVCFTSLTAEQKEMAVQTGIKPYSWDEFLHLGKVNEMEILPPQPFNICTIMYTSGTSGDPKGVVLT  241 (660)
Q Consensus       162 ~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~TSGTTG~pK~v~~t  241 (660)
                      +..........+..++.++.............+....++.++...............++|+++|+|||||||.||||++|
T Consensus       165 ~~~~~~~~~~~l~~vi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~a~I~yTSGTTG~PKGV~lt  244 (666)
T PLN02614        165 LFKTCPNSTEYMKTVVSFGGVSREQKEEAETFGLVIYAWDEFLKLGEGKQYDLPIKKKSDICTIMYTSGTTGDPKGVMIS  244 (666)
T ss_pred             HHHhcccccccceEEEEeCCCChHHhhhhhhcCcEEEEHHHHHhhcccCCCCCCCCCCCceEEEEEcCCCCCCCcEEEEe
Confidence            43322211123556666654221111011111233467777765442222222334679999999999999999999999


Q ss_pred             chhHHHHhhhhhhhcccccCCCCCCcEEEEecChhHHHHHHHHHHHhhcCcEEEEecCChhhHHHHhhhhcCeEEEechH
Q 006111          242 HETIATFVSGVDLFLDQFEDKMTVDDVYLSFLPLAHILDRVIEEYFFRRGASVGYYHGDLNALRDDLMELKPTLLAGVPR  321 (660)
Q Consensus       242 h~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~pl~~~~g~~~~l~~l~~G~~~v~~~~~~~~~~~~i~~~~~t~~~~~p~  321 (660)
                      |+++.+.+......+.....++..+|++++++|++|.++......+++.|+++++.++++..+++.|++++||+++++|.
T Consensus       245 h~nl~~~~~~~~~~~~~~~~~~~~~d~~l~~lPl~H~~~~~~~~~~l~~G~~v~~~~~~~~~~~~~i~~~~~T~~~~vP~  324 (666)
T PLN02614        245 NESIVTLIAGVIRLLKSANAALTVKDVYLSYLPLAHIFDRVIEECFIQHGAAIGFWRGDVKLLIEDLGELKPTIFCAVPR  324 (666)
T ss_pred             cHHHHHHHHHHHhhccccccCCCCCcEEEEeccHHHHHHHHHHHHHHHhCCEEEEeCCCHHHHHHHHHHhCCeEEEecHH
Confidence            99999887665433211112467899999999999999987666678899999988778999999999999999999999


Q ss_pred             HHHHHHHHHHHHHHhhchHHHHHHHHHHHHHHHHHhhCCCCCCcchhhhHHHHHHHHHHhCCcEeEEEEccCCCCHHHHH
Q 006111          322 VFEKIHEGIKKALEELRPLRRRIFDALYKYKLAWMNMGYKQREASPLADLLAFRKVKARLGGRLRLVISGGAPLSTEVEE  401 (660)
Q Consensus       322 ~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lr~i~~~G~~l~~~~~~  401 (660)
                      +++.+.............+.+.++.++.+.+...+..|.......+..+.+.++++++.+++++|.+++||+++++.+. 
T Consensus       325 ~~~~l~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lg~~lr~~~~Gga~l~~~~~-  403 (666)
T PLN02614        325 VLDRVYSGLQKKLSDGGFLKKFVFDSAFSYKFGNMKKGQSHVEASPLCDKLVFNKVKQGLGGNVRIILSGAAPLASHVE-  403 (666)
T ss_pred             HHHHHHHHHHHHHhccCHHHHHHHHHHHHHHHHHHHcCCCCcccchHHHHHHHHHHHHHhCCcEEEEEEcCCCCCHHHH-
Confidence            9999988776666666666667777776666555555544555667788888999999998999999999999998764 


Q ss_pred             HHHHhc-CCceeeecCCCCCCCceecccCCCccccCccCCCccCeeEEeeecCCCCCCCCCCCCCceEEEccCCcccccC
Q 006111          402 FLRVTC-CAFLVQGYGLTETCGPTTVCFPDEMCMVGTAGPVSVYSELRLEEVPEMGYSPLDDPPCGEVCVRGKTLFSGYY  480 (660)
Q Consensus       402 ~~~~~~-~~~v~~~YG~tE~~~~~~~~~~~~~~~~~~~G~~~~~~~v~ivd~~~~~~~~~~~~~~Gei~v~g~~~~~gy~  480 (660)
                      .|.+.+ +++++++||+||+++..+.....+....+++|+|+|+++++|+|+++++..+++.|+.|||+|+||+++.|||
T Consensus       404 ~~~~~~~~~~i~~~YG~TE~~~~~~~~~~~~~~~~gsvG~p~pg~evki~d~~~~~~~~~~~g~~GEl~vrGp~v~~GY~  483 (666)
T PLN02614        404 SFLRVVACCHVLQGYGLTESCAGTFVSLPDELDMLGTVGPPVPNVDIRLESVPEMEYDALASTPRGEICIRGKTLFSGYY  483 (666)
T ss_pred             HHHHHhcCCCEEeeCchHhhhhheeeeccccCCcCCcccCcCCceEEEEeeecccCcccCCCCCCceEEEcCCccccccc
Confidence            455555 5899999999999876555444333345899999999999999855544445667789999999999999999


Q ss_pred             CCchhhhhcccCCccccCceEEECCCCcEEEEeccCCeeEcCCCeeecchhHHHHHhcCcCcceEEEEecCCCCeEEEEE
Q 006111          481 KNPDLTRESIIDGWFHTGDIGQILPNGVVKIIDRKKNLIKISQGEYVALEYLENVYCVAPIIEDIWVYGDSLKSMLVAVV  560 (660)
Q Consensus       481 ~~~~~~~~~~~~g~~~TGDl~~~~~~G~l~~~GR~~d~i~~~~G~~v~~~~iE~~l~~~p~V~~~~V~~~~~~~~~~a~v  560 (660)
                      ++++.|.+.|.||||+|||+|++|+||+|+++||.||+||+++|++|+|.+||++|.+||.|.+|+|+|.+.+..++|+|
T Consensus       484 ~~pe~T~~~f~dGw~~TGDlg~~d~dG~l~i~gR~kd~ik~~~G~~V~p~eIE~~l~~~p~V~~~~V~g~~~~~~l~alv  563 (666)
T PLN02614        484 KREDLTKEVLIDGWLHTGDVGEWQPNGSMKIIDRKKNIFKLSQGEYVAVENIENIYGEVQAVDSVWVYGNSFESFLVAIA  563 (666)
T ss_pred             CCHHHhhhhhccCCcccceEEEEcCCCCEEEEEcchhceecCCCeeecHHHHHHHHhcCCCeeEEEEEecCCcceEEEEE
Confidence            99999999999999999999999999999999999999997689999999999999999999999999988778999999


Q ss_pred             EcChhhHHHHHHHCCCCCcHHHHhccHHHHHHHHHHHHHHHHhCCCCCceeeeEEEEecCCCCCCCCccccccccchHHH
Q 006111          561 VPCEEDTKKWAYSNGHAGSFLELCSLVQLQNYILSELKNAAERNKLRGFEHIKGVILDPRPFDMERDLVTATLKKKRNKL  640 (660)
Q Consensus       561 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~l~~~~~p~~i~~~~~~~~~~~~P~t~~GKv~R~~l  640 (660)
                      +++.+....|+..++...+..+++.++++.+.+.+++.+..++..|+.|.+++.|.+++++|+++...+||++|++|+.+
T Consensus       564 v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~e~i~~~~l~~~~f~~~ng~lTpt~K~kR~~i  643 (666)
T PLN02614        564 NPNQQILERWAAENGVSGDYNALCQNEKAKEFILGELVKMAKEKKMKGFEIIKAIHLDPVPFDMERDLLTPTFKKKRPQL  643 (666)
T ss_pred             eCCHHHHHHHHHhcCCCcCHHHHhcCHHHHHHHHHHHHHHHHHcCCCCcceeeEEEEeCCCCCCcCCcCCHhhhhhHHHH
Confidence            99999999999988876678888999999999999999887778899999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHhhhcC
Q 006111          641 LIYYQVEIDQLYEKLAP  657 (660)
Q Consensus       641 ~~~~~~~i~~~y~~~~~  657 (660)
                      .+.|+++|++||.+.++
T Consensus       644 ~~~y~~~i~~ly~~~~~  660 (666)
T PLN02614        644 LKYYQSVIDEMYKTTNE  660 (666)
T ss_pred             HHHHHHHHHHHHHhhhh
Confidence            99999999999997654

>PLN02430 long-chain-fatty-acid-CoA ligase

Probab=100.00  E-value=6.8e-86  Score=739.87  Aligned_cols=659  Identities=79%  Similarity=1.305  Sum_probs=561.4

Q ss_pred             CcccccccccCCCCCCCCCCCCCceeccccCCCCCCCCCCCCcHHHHHHHHHHhCCCCCceeeeccccCCCCCceEEeHH
Q 006111            1 MKIFAAQVEEGKEGKDGKPSVGPVYRNLLASNGFPSVDSDLNTAWDIFSMSVQKYPGNRMLGWRPFVDGKFGPYVWKTYK   80 (660)
Q Consensus         1 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ti~~~l~~~a~~~pd~~a~~~~~~~d~~~~~~~~~Ty~   80 (660)
                      ||-++.++.+..++++++|.++++||+......++..++.++|+.++|.+.++++|+++|+.+....++..+.+..+||+
T Consensus         1 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~~~~~~~~~~~p~~~al~~~~~~~~~~~~~~~~Ty~   80 (660)
T PLN02430          1 MKSFAAQVEEGVKGKDGKPSVGPVYRNLLSKKGFPPIDSDITTAWDIFSKSVEKYPDNKMLGWRRIVDGKVGPYMWKTYK   80 (660)
T ss_pred             CCceeeeecccCCCCCCCCCCCCccccccccccccCCCCCCCCHHHHHHHHHHhCCCCceEEEEecCCCCCCCcEEEEHH
Confidence            78899999988888889999999999988777776677899999999999999999999997641112334566778999


Q ss_pred             HHHHHHHHHHHHHHHcCCCCCCEEEEEeCCchhHHHHHHHHHhCCCeEEecCCCCChhHHHHHHhcccceEEEEccchhh
Q 006111           81 EVYEEVLQIVSALRASGAEPGCRVGIYGANCPQWVEAMEACNALSLICVPLYDTLGPGAVNFILDHAEIDFVFVQDKKVK  160 (660)
Q Consensus        81 ql~~~v~~lA~~L~~~Gl~~gd~V~l~~~n~~e~~~~~lA~~~~G~~~vpl~~~~~~~~l~~~l~~~~~~~ii~~~~~~~  160 (660)
                      |+.++++++|.+|.+.|+++||+|+|+++|+++|++++|||+++|++++|+++.++.+++.++++.++++++|+++....
T Consensus        81 el~~~v~~lA~~L~~~Gv~~gd~V~i~~~n~~ew~~~~lA~~~~G~v~vpl~~~~~~~~l~~il~~~~~~~v~~~~~~~~  160 (660)
T PLN02430         81 EVYEEVLQIGSALRASGAEPGSRVGIYGSNCPQWIVAMEACAAHSLICVPLYDTLGPGAVDYIVDHAEIDFVFVQDKKIK  160 (660)
T ss_pred             HHHHHHHHHHHHHHHcCCCCCCEEEEEcCCCHHHHHHHHHHHHcCCeEEEeccCCCHHHHHHHHhccCCCEEEECHHHHH
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999876543


Q ss_pred             hhhccccccccCccEEEEecCCcHHHHHHHhhCCcceeeHHHHHhcCccCCccCCCCCCCceEEEEecCCCCCCCceeee
Q 006111          161 ELLSPDCRSAQRLRVMVCFTSLTAEQKEMAVQTGIKPYSWDEFLHLGKVNEMEILPPQPFNICTIMYTSGTSGDPKGVVL  240 (660)
Q Consensus       161 ~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~TSGTTG~pK~v~~  240 (660)
                      ............+..++.++.............+....+|.++...+........+..++|+++|+|||||||.||||++
T Consensus       161 ~~~~~~~~~~~~l~~ii~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~a~iiyTSGTTG~PKGV~l  240 (660)
T PLN02430        161 ELLEPDCKSAKRLKAIVSFTSVTEEESDKASQIGVKTYSWIDFLHMGKENPSETNPPKPLDICTIMYTSGTSGDPKGVVL  240 (660)
T ss_pred             HHHhhhcccCCCceEEEEECCCChHHhhhhhcCCcEEEEHHHHHHhhccCCCCCCCcCcCceEEEEECCCCCCCCCEEEe
Confidence            33322222234566777776543221111112233456788887655332222334468999999999999999999999


Q ss_pred             cchhHHHHhhhhhhhcccccCCCCCCcEEEEecChhHHHHHHHHHHHhhcCcEEEEecCChhhHHHHhhhhcCeEEEech
Q 006111          241 THETIATFVSGVDLFLDQFEDKMTVDDVYLSFLPLAHILDRVIEEYFFRRGASVGYYHGDLNALRDDLMELKPTLLAGVP  320 (660)
Q Consensus       241 th~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~pl~~~~g~~~~l~~l~~G~~~v~~~~~~~~~~~~i~~~~~t~~~~~p  320 (660)
                      ||+++.+.+.............+..+|++++++|++|.++....+.+++.|+++++...++..+++.+++++||++.++|
T Consensus       241 th~~~~~~~~~~~~~~~~~~~~~~~~d~~ls~lPl~H~~~~~~~~~~l~~G~~i~~~~~~~~~l~~~l~~~~pt~~~~vP  320 (660)
T PLN02430        241 THEAVATFVRGVDLFMEQFEDKMTHDDVYLSFLPLAHILDRMIEEYFFRKGASVGYYHGDLNALRDDLMELKPTLLAGVP  320 (660)
T ss_pred             ecHHHHHHHHHHHhhccccccCCCCCCEEEEeCcHHHHHHHHHHHHHHHcCCEEEEeCCChhhHHHHHHHhCCcEEEecH
Confidence            99999987766433221112246788999999999999998877777899999988877889999999999999999999


Q ss_pred             HHHHHHHHHHHHHHHhhchHHHHHHHHHHHHHHHHHhhCCCCCCcchhhhHHHHHHHHHHhCCcEeEEEEccCCCCHHHH
Q 006111          321 RVFEKIHEGIKKALEELRPLRRRIFDALYKYKLAWMNMGYKQREASPLADLLAFRKVKARLGGRLRLVISGGAPLSTEVE  400 (660)
Q Consensus       321 ~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lr~i~~~G~~l~~~~~  400 (660)
                      .+|+.+.+..........+..+.+++++...+...++.+.......+.++.+.+.+++..+++++|.+++||+++++++.
T Consensus       321 ~~~~~l~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~l~~~~i~~~~G~~lr~~~~gga~l~~~~~  400 (660)
T PLN02430        321 RVFERIHEGIQKALQELNPRRRLIFNALYKYKLAWMNRGYSHKKASPMADFLAFRKVKAKLGGRLRLLISGGAPLSTEIE  400 (660)
T ss_pred             HHHHHHHHHHHHHHhccCHHHHHHHHHHHHHHHHHHhcCCCCCCcchhHHHHHHHHHHHHhCCeEEEEEECCCCCCHHHH
Confidence            99999999888877777888888999999888888887766556677888889999999999999999999999999987


Q ss_pred             HHHHHhcCCceeeecCCCCCCCceecccCCCccccCccCCCccCeeEEeeecCCCCCCCCCCCCCceEEEccCCcccccC
Q 006111          401 EFLRVTCCAFLVQGYGLTETCGPTTVCFPDEMCMVGTAGPVSVYSELRLEEVPEMGYSPLDDPPCGEVCVRGKTLFSGYY  480 (660)
Q Consensus       401 ~~~~~~~~~~v~~~YG~tE~~~~~~~~~~~~~~~~~~~G~~~~~~~v~ivd~~~~~~~~~~~~~~Gei~v~g~~~~~gy~  480 (660)
                      +.++...+++++++||+||+++.++.....+....+++|.|.++++++++++++.+..+.+.++.|||+|+||+++.||+
T Consensus       401 ~~~~~~~~~~i~~~YG~TE~~~~~~~~~~~~~~~~gsvG~p~~~~evki~d~~~~g~~~~~~~~~GEi~vrg~~v~~GY~  480 (660)
T PLN02430        401 EFLRVTSCAFVVQGYGLTETLGPTTLGFPDEMCMLGTVGAPAVYNELRLEEVPEMGYDPLGEPPRGEICVRGKCLFSGYY  480 (660)
T ss_pred             HHHHHhcCCCeeeecchhhhhhceEeeccccCCCCCCccCCCCceEEEEEEcCCcCcccCCCCCcceEEecCCCcccccc
Confidence            76665545789999999999987776655444446899999999999999866655556666678999999999999999


Q ss_pred             CCchhhhhcccCCccccCceEEECCCCcEEEEeccCCeeEcCCCeeecchhHHHHHhcCcCcceEEEEecCCCCeEEEEE
Q 006111          481 KNPDLTRESIIDGWFHTGDIGQILPNGVVKIIDRKKNLIKISQGEYVALEYLENVYCVAPIIEDIWVYGDSLKSMLVAVV  560 (660)
Q Consensus       481 ~~~~~~~~~~~~g~~~TGDl~~~~~~G~l~~~GR~~d~i~~~~G~~v~~~~iE~~l~~~p~V~~~~V~~~~~~~~~~a~v  560 (660)
                      ++++.+.+.|.+|||+|||+|++|+||+|++.||.+|+|++++|++|+|.+||++|.+||.|.+|+|+|....+.++|+|
T Consensus       481 ~~~e~t~~~~~dGw~~TGDig~~d~dG~l~i~gR~kd~ik~~~G~~V~p~~IE~~l~~~p~V~~~~V~G~~~~~~~~A~v  560 (660)
T PLN02430        481 KNPELTEEVMKDGWFHTGDIGEILPNGVLKIIDRKKNLIKLSQGEYVALEYLENVYGQNPIVEDIWVYGDSFKSMLVAVV  560 (660)
T ss_pred             CChHHhhhhhhccceeccceEEECCCCcEEEEEcccccEEcCCCcEEchHHHHHHHhcCCCeeEEEEEecCCcceEEEEE
Confidence            99999999999999999999999999999999999999998789999999999999999999999999976667999999


Q ss_pred             EcChhhHHHHHHHCCCCCcHHHHhccHHHHHHHHHHHHHHHHhCCCCCceeeeEEEEecCCCCCCCCccccccccchHHH
Q 006111          561 VPCEEDTKKWAYSNGHAGSFLELCSLVQLQNYILSELKNAAERNKLRGFEHIKGVILDPRPFDMERDLVTATLKKKRNKL  640 (660)
Q Consensus       561 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~l~~~~~p~~i~~~~~~~~~~~~P~t~~GKv~R~~l  640 (660)
                      +++++....|....+...+..+++.++++.+.+.+++.+.+++..|+.|++++.|.++++||+++...+|+++|++|+.+
T Consensus       561 v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~i~~~~~~~~l~~~e~i~~~~l~~~~~~~~~g~lT~t~K~~R~~i  640 (660)
T PLN02430        561 VPNEENTNKWAKDNGFTGSFEELCSLPELKEHILSELKSTAEKNKLRGFEYIKGVILETKPFDVERDLVTATLKKRRNNL  640 (660)
T ss_pred             EcCHHHHHHHHHhCCCCCCHHHHhcCHHHHHHHHHHHHHHHHHhCCCCceeeeEEEEECCCCCCcCCcCChhhhhhhHHH
Confidence            99999999999888776678888999999999999999998777899999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHhhhcCCC
Q 006111          641 LIYYQVEIDQLYEKLAPGR  659 (660)
Q Consensus       641 ~~~~~~~i~~~y~~~~~~~  659 (660)
                      .+.|+++|++||.+..+++
T Consensus       641 ~~~y~~~i~~ly~~~~~~~  659 (660)
T PLN02430        641 LKYYQVEIDEMYRKLAEKR  659 (660)
T ss_pred             HHHHHHHHHHHHHhhhhcc
Confidence            9999999999999887754

>KOG1256 consensus Long-chain acyl-CoA synthetases (AMP-forming) [Lipid transport and metabolism]

Probab=100.00  E-value=3e-86  Score=691.46  Aligned_cols=629  Identities=46%  Similarity=0.765  Sum_probs=573.9

Q ss_pred             Cceecccc--CCCCCCCCCCCCcHHHHHHHHHHhCCCCCceeeeccccCCCCCceEEeHHHHHHHHHHHHHHHHHcCCCC
Q 006111           23 PVYRNLLA--SNGFPSVDSDLNTAWDIFSMSVQKYPGNRMLGWRPFVDGKFGPYVWKTYKEVYEEVLQIVSALRASGAEP  100 (660)
Q Consensus        23 ~~~~~~~~--~~~~~~~~~~~~ti~~~l~~~a~~~pd~~a~~~~~~~d~~~~~~~~~Ty~ql~~~v~~lA~~L~~~Gl~~  100 (660)
                      ++||+.-.  +.+++-.+....|+++.|.+.+..+|+.+++......+ ..++|+.+||+|+++++..++..|++.|+++
T Consensus        54 ~~~~s~~~~~~~~~~~~~~~~~T~~~~f~~~~~~~~~~p~LG~r~~~~-~~~~~~~~tY~q~~e~~~~~~~~l~~lG~~~  132 (691)
T KOG1256|consen   54 GSRRSAVLPREELFSCPFDGPLTLYEGFRRSVEKSGNGPMLGTRVIVD-GKGPYEWLTYKQVYERAENLGSGLRKLGVKE  132 (691)
T ss_pred             CceeeeeccCCCCCCCCCCCcccHHHHhhcchhccCCCCceeEEeccc-CCCCcEEEEHHHHHHHHHHHHHHHHHhCCCC
Confidence            89998888  67777788999999999999999999999999884333 5688999999999999999999999999999


Q ss_pred             CCEEEEEeCCchhHHHHHHHHHhCCCeEEecCCCCChhHHHHHHhcccceEEEEc-cchhhhhhccccc-cccCccEEEE
Q 006111          101 GCRVGIYGANCPQWVEAMEACNALSLICVPLYDTLGPGAVNFILDHAEIDFVFVQ-DKKVKELLSPDCR-SAQRLRVMVC  178 (660)
Q Consensus       101 gd~V~l~~~n~~e~~~~~lA~~~~G~~~vpl~~~~~~~~l~~~l~~~~~~~ii~~-~~~~~~~~~~~~~-~~~~~~~i~~  178 (660)
                      ++.|+|++-|++||+++.+||...|.++|||..+++++.+.++++.+.+.++|++ +.....+.+.... ..+.++.++.
T Consensus       133 ~~~VGIy~~N~pEWiis~~a~~~~~~v~VplYdTlg~ea~~~Ii~~~e~~iv~vd~~~k~~~ll~~~~~~~~~~LK~iI~  212 (691)
T KOG1256|consen  133 DSKVGIYAFNRPEWIISEMACYAYSLVNVPLYDTLGAEAVHYIINHAEISIVFVDNAKKAEKLLEIKENDSLPSLKAIIQ  212 (691)
T ss_pred             CceEEEeccCChhhHHhHHHHHhcCCEEeecccCCCHHHHHHHHHhcceeEEEEeCHHHHHHHHhhcccccCccceeEEE
Confidence            9999999999999999999999999999999999999999999999999999999 5556666665554 4678999999


Q ss_pred             ecCCcHHHHHHHhhCCcceeeHHHHHhcCccCCccC-CCCCCCceEEEEecCCCCCCCceeeecchhHHHHhhhhhhhcc
Q 006111          179 FTSLTAEQKEMAVQTGIKPYSWDEFLHLGKVNEMEI-LPPQPFNICTIMYTSGTSGDPKGVVLTHETIATFVSGVDLFLD  257 (660)
Q Consensus       179 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~i~~TSGTTG~pK~v~~th~~l~~~~~~~~~~~~  257 (660)
                      ++.............+....+|.++.+.+....... .++.|+|.|.|+|||||||.||||++||+|+.+.+........
T Consensus       213 ~~~~~~~~~~~~~~~gv~v~S~~e~~~lG~~~~~~~~~~p~p~d~atI~yTSGTTG~PKGVMLTH~Niv~~v~~~~~~~~  292 (691)
T KOG1256|consen  213 LDEPSDELKEKAENNGVEVYSWDEFEELGKKNQRKPRVPPKPDDLATICYTSGTTGNPKGVMLTHRNIVSDVAGIFFLSA  292 (691)
T ss_pred             ecCCchhhhhhhhcCCeEEEEHHHHHhhcccccCCCCCCCCccceEEEEEcCCCCCCCceEEEeccceeehhhhhhhhhh
Confidence            999988888888888899999999999997655555 4889999999999999999999999999999997654333222


Q ss_pred             cccC-CCCCCcEEEEecChhHHHHHHHHHHHhhcCcEEEEecCChhhHHHHhhhhcCeEEEechHHHHHHHHHHHHHHHh
Q 006111          258 QFED-KMTVDDVYLSFLPLAHILDRVIEEYFFRRGASVGYYHGDLNALRDDLMELKPTLLAGVPRVFEKIHEGIKKALEE  336 (660)
Q Consensus       258 ~~~~-~~~~~~~~l~~~pl~~~~g~~~~l~~l~~G~~~v~~~~~~~~~~~~i~~~~~t~~~~~p~~~~~l~~~~~~~~~~  336 (660)
                      .... .....|++++++||.|++........++.|+.+.+.++|+..+.+.|+..+||.+.++|.+|+++.+.+.+...+
T Consensus       293 ~~~~~~~~~~dv~lSyLPLAHi~er~~~~~~~~~G~~IgF~~gD~~~l~~dlk~lkPT~f~~VPRVl~riye~I~~~~~~  372 (691)
T KOG1256|consen  293 AENAKATVGDDVYLSYLPLAHIFERVVELYTFYIGAKIGFARGDILKLTDDLKELKPTVFPGVPRVLERIYEGIQKQVQK  372 (691)
T ss_pred             cccccccccCceEEEeCcHHHHHHHHHHHhHhhcccEEEEecCChHHHHHHHHHhCCcEEeccHhHHHHHHHHHHHHHhc
Confidence            2211 233479999999999999999888888999999999999999999999999999999999999999999999999


Q ss_pred             hchHHHHHHHHHHHHHH-HHHhhCCCCCCcchhhhHHHHHHHHHHhCCcEeEEEEccCCCCHHHHHHHHHhcCCceeeec
Q 006111          337 LRPLRRRIFDALYKYKL-AWMNMGYKQREASPLADLLAFRKVKARLGGRLRLVISGGAPLSTEVEEFLRVTCCAFLVQGY  415 (660)
Q Consensus       337 ~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lr~i~~~G~~l~~~~~~~~~~~~~~~v~~~Y  415 (660)
                      ...+++.++++++..+. ..++.|-... ..+++|++.|.++++.+|+++|.+++|++++++++...++..+|+.|+++|
T Consensus       373 sgflkr~l~~~A~~~k~~~~~~~G~~~~-~~~~~D~lVf~KI~~~LGg~vr~~~sGaAPls~ev~~F~r~~~g~~v~eGY  451 (691)
T KOG1256|consen  373 SGFLKRKLFNFAMAYKLEHRLMKGKSRS-RDRFADKLVFHKIKQSLGGNVRLIISGAAPLSPEVLTFFRAALGCRVLEGY  451 (691)
T ss_pred             chHHHHHHHHHHHHHHHHHHhhCCCCcc-cchHHHHHHHHHHHHHhcCceeEEEecCCCCCHHHHHHHHHhcCceeeecc
Confidence            99999999999998887 4477774443 789999999999999999999999999999999999999999999999999


Q ss_pred             CCCCCCCceecccCCCccccCccCCCccCeeEEeeecCCCCCCCCCCCCCceEEEccCCcccccCCCchhhhhcc-cCCc
Q 006111          416 GLTETCGPTTVCFPDEMCMVGTAGPVSVYSELRLEEVPEMGYSPLDDPPCGEVCVRGKTLFSGYYKNPDLTRESI-IDGW  494 (660)
Q Consensus       416 G~tE~~~~~~~~~~~~~~~~~~~G~~~~~~~v~ivd~~~~~~~~~~~~~~Gei~v~g~~~~~gy~~~~~~~~~~~-~~g~  494 (660)
                      |+|||++.++....++. ..+++|.|+|+++++++|+++-+....+.  .|||||||+.++.||++||+.|.+++ .|||
T Consensus       452 GlTEts~g~~~~~~~d~-~lgsvG~p~p~~~vKL~dvpe~ny~a~~~--~GEIcirG~~Vf~GYyK~p~~T~e~ideDGW  528 (691)
T KOG1256|consen  452 GLTETSAGTTLTLPGDN-VLGSVGPPVPGNEVKLVDVPEMNYDADGS--KGEICVRGPNVFMGYYKDPEKTAEAIDEDGW  528 (691)
T ss_pred             cccccCCceEeccCCCC-CCCCcCCcccCceEEEechHHhCcCcCCC--cceEEEecchhceeccCChHHHhhhhccccc
Confidence            99999977777777666 55999999999999999999888777763  79999999999999999999999999 9999


Q ss_pred             cccCceEEECCCCcEEEEeccCCeeEcCCCeeecchhHHHHHhcCcCcceEEEEecCCCCeEEEEEEcChhhHHHHHHHC
Q 006111          495 FHTGDIGQILPNGVVKIIDRKKNLIKISQGEYVALEYLENVYCVAPIIEDIWVYGDSLKSMLVAVVVPCEEDTKKWAYSN  574 (660)
Q Consensus       495 ~~TGDl~~~~~~G~l~~~GR~~d~i~~~~G~~v~~~~iE~~l~~~p~V~~~~V~~~~~~~~~~a~v~~~~~~~~~~~~~~  574 (660)
                      ++|||+|+++++|.|++.||+++++|+++|++|.|+.||++..+.+.|.+.+|.|...+..++|+|+++++..+.|+..+
T Consensus       529 LhTGDiG~~~p~G~l~IidRkK~ifklaqGEyVaPe~IEniy~~~~~V~qi~V~g~s~~~~LvaiVvpd~e~~~~~a~~~  608 (691)
T KOG1256|consen  529 LHTGDIGEWDPNGTLKIIDRKKNIFKLAQGEYVAPEKIENIYKRSLPVQQIFVLGDSLRSFLVAIVVPDPEVLKSWAAKD  608 (691)
T ss_pred             cccccceeECCCccEEEEecccceEEcCCCCccChHHHHHHHhcCCceEEEEEECCcchhcEEEEEecChhhchhhHHHc
Confidence            99999999999999999999999999999999999999999999999999999999888999999999999999999976


Q ss_pred             CCCCcHHHHhccHHHHHHHHHHHHHHHHhCCCCCceeeeEEEEecCCCCCCCCccccccccchHHHHHHHHHHHHHHHhh
Q 006111          575 GHAGSFLELCSLVQLQNYILSELKNAAERNKLRGFEHIKGVILDPRPFDMERDLVTATLKKKRNKLLIYYQVEIDQLYEK  654 (660)
Q Consensus       575 ~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~l~~~~~p~~i~~~~~~~~~~~~P~t~~GKv~R~~l~~~~~~~i~~~y~~  654 (660)
                      +...++.++|.+.++.+.+.+++.+..++..|..+...+.|.+.++||+++..-+||+-|++|..+.++|+++||+||+.
T Consensus       609 ~~~~~~eelc~n~~~k~~vl~el~~~~~~~~l~~fe~vk~v~l~~~~FsienglltPTlK~KR~~l~~~yk~~Id~mY~~  688 (691)
T KOG1256|consen  609 GVKGTFEELCRNLDVKEAVLSELVKVGKENGLKGFEQVKKVHLLPDPFSIENGLLTPTLKIKRPQLLKYYKKQIDELYKE  688 (691)
T ss_pred             cCchhHHHHhcChhhHHHHHHHHHHHHhhhhccChhhEeeEEEecccccccCCccchhhhhhhHHHHHHHHHHHHHHHhh
Confidence            77889999999999999999999999888899999999999999999999999999999999999999999999999997


Q ss_pred             hc
Q 006111          655 LA  656 (660)
Q Consensus       655 ~~  656 (660)
                      ..
T Consensus       689 ~~  690 (691)
T KOG1256|consen  689 IK  690 (691)
T ss_pred             cc
Confidence            54

>PLN02861 long-chain-fatty-acid-CoA ligase

Probab=100.00  E-value=1.6e-84  Score=730.33  Aligned_cols=649  Identities=50%  Similarity=0.900  Sum_probs=540.8

Q ss_pred             cccccCCCCCCCCCCCCCceeccccCCCCCCCCCCCCcHHHHHHHHHHhCCCCCceeeeccccCCCCCceEEeHHHHHHH
Q 006111            6 AQVEEGKEGKDGKPSVGPVYRNLLASNGFPSVDSDLNTAWDIFSMSVQKYPGNRMLGWRPFVDGKFGPYVWKTYKEVYEE   85 (660)
Q Consensus         6 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ti~~~l~~~a~~~pd~~a~~~~~~~d~~~~~~~~~Ty~ql~~~   85 (660)
                      ..+||---+++.+|.++++||+......+...++...|+.++|.+.++++|+++|+......++..++++++||+||.++
T Consensus         7 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~~~l~~~~~~~p~~~al~~~~~~~~~~g~~~~~Ty~el~~~   86 (660)
T PLN02861          7 VKVEESRPATGGKPSAGPVYRSIYAKDGLLDLPADIDSPWQFFSDAVKKYPNNQMLGRRQVTDSKVGPYVWLTYKEVYDA   86 (660)
T ss_pred             eeeccCCCCCCCCCCCCCcccccccccccccCCCCCCCHHHHHHHHHHhCCCCCeEEEEecCCCCCCCceEEEHHHHHHH
Confidence            34667777888999999999999888888777888899999999999999999999753111333456788999999999


Q ss_pred             HHHHHHHHHHcCCCCCCEEEEEeCCchhHHHHHHHHHhCCCeEEecCCCCChhHHHHHHhcccceEEEEccchhhhhhcc
Q 006111           86 VLQIVSALRASGAEPGCRVGIYGANCPQWVEAMEACNALSLICVPLYDTLGPGAVNFILDHAEIDFVFVQDKKVKELLSP  165 (660)
Q Consensus        86 v~~lA~~L~~~Gl~~gd~V~l~~~n~~e~~~~~lA~~~~G~~~vpl~~~~~~~~l~~~l~~~~~~~ii~~~~~~~~~~~~  165 (660)
                      ++++|++|.+.|+++||+|+|+++|+++|++++|||+++|++++|+++.++.+++.++|++++++++|++......+...
T Consensus        87 v~~lA~~L~~~Gv~~gd~Vai~~~n~~e~~~~~lA~~~~G~v~vpl~~~~~~~~l~~il~~s~~~~v~~~~~~~~~~~~~  166 (660)
T PLN02861         87 AIRIGSAIRSRGVNPGDRCGIYGSNCPEWIIAMEACNSQGITYVPLYDTLGANAVEFIINHAEVSIAFVQESKISSILSC  166 (660)
T ss_pred             HHHHHHHHHHcCCCCCCEEEEEcCCCHHHHHHHHHHHHcCCeEEEecCCCCHHHHHHHHHcCCCCEEEECHHHHHHHHHh
Confidence            99999999999999999999999999999999999999999999999999999999999999999999987765544332


Q ss_pred             ccccccCccEEEEecCCcHHHHHHHhhCCcceeeHHHHHhcCccCCccCCCCCCCceEEEEecCCCCCCCceeeecchhH
Q 006111          166 DCRSAQRLRVMVCFTSLTAEQKEMAVQTGIKPYSWDEFLHLGKVNEMEILPPQPFNICTIMYTSGTSGDPKGVVLTHETI  245 (660)
Q Consensus       166 ~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~TSGTTG~pK~v~~th~~l  245 (660)
                      .......++.++.+++............+....+|.++...... .....+..++|+++|+|||||||.||||++||+++
T Consensus       167 ~~~~~~~l~~ii~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~dd~a~i~yTSGTTG~PKGV~lth~~l  245 (660)
T PLN02861        167 LPKCSSNLKTIVSFGDVSSEQKEEAEELGVSCFSWEEFSLMGSL-DCELPPKQKTDICTIMYTSGTTGEPKGVILTNRAI  245 (660)
T ss_pred             hhhCCCCCEEEEEECCCChhhhhhhhcCCcEEEEHHHHHHhCcc-cCCCCccCCCceEEEEecCCCCCCCCEEEEecHHH
Confidence            22111235667766543221111111122334577777654422 12223456899999999999999999999999999


Q ss_pred             HHHhhhhhhhcccccCCCCCCcEEEEecChhHHHHHHHHHHHhhcCcEEEEecCChhhHHHHhhhhcCeEEEechHHHHH
Q 006111          246 ATFVSGVDLFLDQFEDKMTVDDVYLSFLPLAHILDRVIEEYFFRRGASVGYYHGDLNALRDDLMELKPTLLAGVPRVFEK  325 (660)
Q Consensus       246 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~pl~~~~g~~~~l~~l~~G~~~v~~~~~~~~~~~~i~~~~~t~~~~~p~~~~~  325 (660)
                      +..+......+......+..+|++++++|++|++++...+.+++.|+++++...++..+++.|++++||+++++|.+++.
T Consensus       246 ~~~~~~~~~~~~~~~~~~~~~d~~l~~lPl~H~~~~~~~~~~l~~G~~v~~~~~~~~~~~~~i~~~~~T~~~~vP~~~~~  325 (660)
T PLN02861        246 IAEVLSTDHLLKVTDRVATEEDSYFSYLPLAHVYDQVIETYCISKGASIGFWQGDIRYLMEDVQALKPTIFCGVPRVYDR  325 (660)
T ss_pred             HHHHHHHHhccccccccCCCCCEEEEECcHHHHHHHHHHHHHHHhCCEEEEeCCCHHHHHHHHHHhCCcEEeechHHHHH
Confidence            98876654433111112567899999999999999877666899999999887789999999999999999999999999


Q ss_pred             HHHHHHHHHHhhchHHHHHHHHHHHHHHHHHhhCCCCCCcchhhhHHHHHHHHHHhCCcEeEEEEccCCCCHHHHHHHHH
Q 006111          326 IHEGIKKALEELRPLRRRIFDALYKYKLAWMNMGYKQREASPLADLLAFRKVKARLGGRLRLVISGGAPLSTEVEEFLRV  405 (660)
Q Consensus       326 l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lr~i~~~G~~l~~~~~~~~~~  405 (660)
                      |.+...........+.+.+++++...+...++.+.......+.++.+.++++++.+++++|.+++||+++++++.+ |.+
T Consensus       326 l~~~~~~~~~~~~~~~~~l~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~lg~~lr~~~~Ggapl~~~~~~-~~~  404 (660)
T PLN02861        326 IYTGIMQKISSGGMLRKKLFDFAYNYKLGNLRKGLKQEEASPRLDRLVFDKIKEGLGGRVRLLLSGAAPLPRHVEE-FLR  404 (660)
T ss_pred             HHHHHHHHHhccCHHHHHHHHHHHHHHHHHHhcCCCCcCccHhHHHHHHHHHHHHhCCcEEEEEECCCCCCHHHHH-HHH
Confidence            9988877777777788888888888777766666555555677888899999999999999999999999999865 555


Q ss_pred             hcC-CceeeecCCCCCCCceecccCCCccccCccCCCccCeeEEeeecCCCCCCCCCCCCCceEEEccCCcccccCCCch
Q 006111          406 TCC-AFLVQGYGLTETCGPTTVCFPDEMCMVGTAGPVSVYSELRLEEVPEMGYSPLDDPPCGEVCVRGKTLFSGYYKNPD  484 (660)
Q Consensus       406 ~~~-~~v~~~YG~tE~~~~~~~~~~~~~~~~~~~G~~~~~~~v~ivd~~~~~~~~~~~~~~Gei~v~g~~~~~gy~~~~~  484 (660)
                      .++ ..++++||+||+++.++..........+++|+|+++++++++|+++.+......++.|||+|+||+++.||+++++
T Consensus       405 ~~~~~~l~~~YG~TE~~~~~~~~~~~~~~~~gsvG~p~p~~ev~i~d~~~~g~~~~~~~~~GEi~vrGp~v~~GY~~~pe  484 (660)
T PLN02861        405 VTSCSVLSQGYGLTESCGGCFTSIANVFSMVGTVGVPMTTIEARLESVPEMGYDALSDVPRGEICLRGNTLFSGYHKRQD  484 (660)
T ss_pred             HHcCCCeeEecchhhhhhceeecccccCCCCCCccCccCceEEEEEEccccCcccCCCCCceeEEEcCCcccccccCCHH
Confidence            566 4799999999998766554433333458999999999999998544443333344679999999999999999999


Q ss_pred             hhhhcccCCccccCceEEECCCCcEEEEeccCCeeEcCCCeeecchhHHHHHhcCcCcceEEEEecCCCCeEEEEEEcCh
Q 006111          485 LTRESIIDGWFHTGDIGQILPNGVVKIIDRKKNLIKISQGEYVALEYLENVYCVAPIIEDIWVYGDSLKSMLVAVVVPCE  564 (660)
Q Consensus       485 ~~~~~~~~g~~~TGDl~~~~~~G~l~~~GR~~d~i~~~~G~~v~~~~iE~~l~~~p~V~~~~V~~~~~~~~~~a~v~~~~  564 (660)
                      .+.+.|.||||+|||+|++|+||+|+++||+||+|++++|++|+|.+||++|.+||.|.+|+|+|.+.++.++|+|++..
T Consensus       485 ~T~~~f~dGw~~TGDlg~~d~dG~l~i~GR~kd~Ik~~~G~~I~p~eIE~~l~~~p~V~~a~V~G~~~~~~~~A~vv~~~  564 (660)
T PLN02861        485 LTEEVLIDGWFHTGDIGEWQPNGAMKIIDRKKNIFKLSQGEYVAVENLENTYSRCPLIASIWVYGNSFESFLVAVVVPDR  564 (660)
T ss_pred             HHHhhhhccCcccCceEEECCCCcEEEEeccccceEcCCCeEEcHHHHHHHHhcCCCeeEEEEEecCCcceeEEEEEcCH
Confidence            99999999999999999999999999999999999977899999999999999999999999999886779999999999


Q ss_pred             hhHHHHHHHCCCCCcHHHHhccHHHHHHHHHHHHHHHHhCCCCCceeeeEEEEecCCCCCCCCccccccccchHHHHHHH
Q 006111          565 EDTKKWAYSNGHAGSFLELCSLVQLQNYILSELKNAAERNKLRGFEHIKGVILDPRPFDMERDLVTATLKKKRNKLLIYY  644 (660)
Q Consensus       565 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~l~~~~~p~~i~~~~~~~~~~~~P~t~~GKv~R~~l~~~~  644 (660)
                      +....|....+....+.+++.+.+....+.+++.+.+++..|+.|.+++.+.++++||+++..++|+++|++|+++++.|
T Consensus       565 ~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~e~i~~~~l~~~~ft~~ng~lT~t~K~~R~~i~~~y  644 (660)
T PLN02861        565 QALEDWAANNNKTGDFKSLCKNLKARKYILDELNSTGKKLQLRGFEMLKAIHLEPNPFDIERDLITPTFKLKRPQLLKYY  644 (660)
T ss_pred             HHHHHHHHHcCCCCCHHHHhcCHHHHHHHHHHHHHHHHHcCCCCcceeeEEEEeCCCCCcccCcCCHHHhhhHHHHHHHH
Confidence            98888888776655678888888899999999999988778999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHhhhc
Q 006111          645 QVEIDQLYEKLA  656 (660)
Q Consensus       645 ~~~i~~~y~~~~  656 (660)
                      +++|++||....
T Consensus       645 ~~~I~~lY~~~~  656 (660)
T PLN02861        645 KDCIDQLYSEAK  656 (660)
T ss_pred             HHHHHHHHHhhh
Confidence            999999998643

>PLN02736 long-chain acyl-CoA synthetase

Probab=100.00  E-value=1.5e-82  Score=715.84  Aligned_cols=631  Identities=40%  Similarity=0.663  Sum_probs=529.5

Q ss_pred             CCCCCCCCCceeccccCCCCCC---CCCCCCcHHHHHHHHHHhCCCCCceeeeccccCCCCCceEEeHHHHHHHHHHHHH
Q 006111           15 KDGKPSVGPVYRNLLASNGFPS---VDSDLNTAWDIFSMSVQKYPGNRMLGWRPFVDGKFGPYVWKTYKEVYEEVLQIVS   91 (660)
Q Consensus        15 ~~~~~~~~~~~~~~~~~~~~~~---~~~~~~ti~~~l~~~a~~~pd~~a~~~~~~~d~~~~~~~~~Ty~ql~~~v~~lA~   91 (660)
                      .-.+.+.+.+||+...+.++-+   .+....++.++|+.+++++|+++|+......++..+.++.+||+||.++++++|+
T Consensus        14 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~tl~~~l~~~a~~~p~~~al~~~~~~~~~~~~~~~lTy~el~~~v~~lA~   93 (651)
T PLN02736         14 EKLQTGKWNVYRSARSPLKLVSRFPDHPEIGTLHDNFVYAVETFRDYKYLGTRIRVDGTVGEYKWMTYGEAGTARTAIGS   93 (651)
T ss_pred             CCCCCCCCCeecCccccccccccCCCCCCCCCHHHHHHHHHHhCCCCCeEEEEecCCCCCCCcEEEEHHHHHHHHHHHHH
Confidence            3456778899998776655533   3556779999999999999999999542000333456788999999999999999


Q ss_pred             HHHHcCCCCCCEEEEEeCCchhHHHHHHHHHhCCCeEEecCCCCChhHHHHHHhcccceEEEEccchhhhhhcccccccc
Q 006111           92 ALRASGAEPGCRVGIYGANCPQWVEAMEACNALSLICVPLYDTLGPGAVNFILDHAEIDFVFVQDKKVKELLSPDCRSAQ  171 (660)
Q Consensus        92 ~L~~~Gl~~gd~V~l~~~n~~e~~~~~lA~~~~G~~~vpl~~~~~~~~l~~~l~~~~~~~ii~~~~~~~~~~~~~~~~~~  171 (660)
                      +|.+.|+++||+|+|+++|+++++++++||+++|++++|+++.++.+++.++|+.++++++|++.+....+..... ..+
T Consensus        94 ~L~~~Gv~~gd~Vai~~~n~~e~~~~~lA~~~~G~v~vpl~~~~~~~~l~~il~~~~~~~l~~~~~~~~~~~~~~~-~~~  172 (651)
T PLN02736         94 GLVQHGIPKGACVGLYFINRPEWLIVDHACSAYSYVSVPLYDTLGPDAVKFIVNHAEVAAIFCVPQTLNTLLSCLS-EIP  172 (651)
T ss_pred             HHHHhCCCCCCEEEEEcCCCHHHHHHHHHHHHcCCeEEEeecCCCHHHHHHHHhccCCCEEEECHHHHHHHHHHhh-cCC
Confidence            9999999999999999999999999999999999999999999999999999999999999999877665544322 334


Q ss_pred             CccEEEEecCCcHHHHHHHhhCCcceeeHHHHHhcCccCCccCCCCCCCceEEEEecCCCCCCCceeeecchhHHHHhhh
Q 006111          172 RLRVMVCFTSLTAEQKEMAVQTGIKPYSWDEFLHLGKVNEMEILPPQPFNICTIMYTSGTSGDPKGVVLTHETIATFVSG  251 (660)
Q Consensus       172 ~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~TSGTTG~pK~v~~th~~l~~~~~~  251 (660)
                      .++.++..+.............+....+|.++...............++++++|+|||||||.||||++||++++..+..
T Consensus       173 ~l~~ii~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dd~a~IlyTSGTTG~PKGV~lsh~~l~~~~~~  252 (651)
T PLN02736        173 SVRLIVVVGGADEPLPSLPSGTGVEIVTYSKLLAQGRSSPQPFRPPKPEDVATICYTSGTTGTPKGVVLTHGNLIANVAG  252 (651)
T ss_pred             CceEEEEECCCchhhhhhhccCCcEEEEHHHHHHhcccCCCCCCCCCccceEEEEEcCCCCCCCcEEEEecHHHHHHHHH
Confidence            56666666532221111111123445678887765432222233457899999999999999999999999999998887


Q ss_pred             hhhhcccccCCCCCCcEEEEecChhHHHHHHHHHHHhhcCcEEEEecCChhhHHHHhhhhcCeEEEechHHHHHHHHHHH
Q 006111          252 VDLFLDQFEDKMTVDDVYLSFLPLAHILDRVIEEYFFRRGASVGYYHGDLNALRDDLMELKPTLLAGVPRVFEKIHEGIK  331 (660)
Q Consensus       252 ~~~~~~~~~~~~~~~~~~l~~~pl~~~~g~~~~l~~l~~G~~~v~~~~~~~~~~~~i~~~~~t~~~~~p~~~~~l~~~~~  331 (660)
                      ....+     ++..+|++++++|++|.+++...+.+++.|+++++.+.++..+++.|+++++|+++++|.+++.+.+...
T Consensus       253 ~~~~~-----~~~~~d~~l~~lPl~h~~~~~~~~~~l~~G~~i~~~~~~~~~~~~~i~~~~~t~~~~vP~~~~~l~~~~~  327 (651)
T PLN02736        253 SSLST-----KFYPSDVHISYLPLAHIYERVNQIVMLHYGVAVGFYQGDNLKLMDDLAALRPTIFCSVPRLYNRIYDGIT  327 (651)
T ss_pred             HHhcc-----CCCCCCEEEEeCCHHHHHHHHHHHHHHHcCCEEEEeCCCHHHHHHHHHHhCCcEEecchHHHHHHHHHHH
Confidence            76665     7788999999999999999988888899999999988888999999999999999999999999999888


Q ss_pred             HHHHhhchHHHHHHHHHHHHHHHHHhhCCCCCCcchhhhHHHHHHHHHHhCCcEeEEEEccCCCCHHHHHHHHHhcCCce
Q 006111          332 KALEELRPLRRRIFDALYKYKLAWMNMGYKQREASPLADLLAFRKVKARLGGRLRLVISGGAPLSTEVEEFLRVTCCAFL  411 (660)
Q Consensus       332 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lr~i~~~G~~l~~~~~~~~~~~~~~~v  411 (660)
                      ........+.+.++.+++..+...+..+.   ...+.++.+.+++++..+++++|.+++||+++++++.+++.+.+|+++
T Consensus       328 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~lg~~lr~~~~gGa~l~~~~~~~~~~~~g~~~  404 (651)
T PLN02736        328 NAVKESGGLKERLFNAAYNAKKQALENGK---NPSPMWDRLVFNKIKAKLGGRVRFMSSGASPLSPDVMEFLRICFGGRV  404 (651)
T ss_pred             HHHhcccHHHHHHHHHHHHHHHHHHHcCC---CCCchHHHHHHHHHHHHhcCcEEEEEeCCCCCCHHHHHHHHHHhCCCe
Confidence            77777788888888887766655444442   233466777888888888889999999999999999999998889999


Q ss_pred             eeecCCCCCCCceecccCCCccccCccCCCccCeeEEeeecCCCCCC-CCCCCCCceEEEccCCcccccCCCchhhhhcc
Q 006111          412 VQGYGLTETCGPTTVCFPDEMCMVGTAGPVSVYSELRLEEVPEMGYS-PLDDPPCGEVCVRGKTLFSGYYKNPDLTRESI  490 (660)
Q Consensus       412 ~~~YG~tE~~~~~~~~~~~~~~~~~~~G~~~~~~~v~ivd~~~~~~~-~~~~~~~Gei~v~g~~~~~gy~~~~~~~~~~~  490 (660)
                      +++||+||+++.++...... ...+++|+|+|+++++|+|.+++... ....++.|||+|+||+++.||+++++.+.+.|
T Consensus       405 ~~~YG~TE~~~~~~~~~~~~-~~~~~vG~p~pg~~v~i~d~~~~~~~~~~~~~~~GEl~vrgp~v~~GY~~~~~~t~~~~  483 (651)
T PLN02736        405 LEGYGMTETSCVISGMDEGD-NLSGHVGSPNPACEVKLVDVPEMNYTSEDQPYPRGEICVRGPIIFKGYYKDEVQTREVI  483 (651)
T ss_pred             EEEechHHhchheeccCCCC-CCCCccCCccCceEEEEEEccccCcccCCCCCCCceEEecCCccccccccCHHHHHhhh
Confidence            99999999987766555433 34489999999999999983332211 11122469999999999999999999999999


Q ss_pred             -cCCccccCceEEECCCCcEEEEeccCCeeEcCCCeeecchhHHHHHhcCcCcceEEEEecCCCCeEEEEEEcChhhHHH
Q 006111          491 -IDGWFHTGDIGQILPNGVVKIIDRKKNLIKISQGEYVALEYLENVYCVAPIIEDIWVYGDSLKSMLVAVVVPCEEDTKK  569 (660)
Q Consensus       491 -~~g~~~TGDl~~~~~~G~l~~~GR~~d~i~~~~G~~v~~~~iE~~l~~~p~V~~~~V~~~~~~~~~~a~v~~~~~~~~~  569 (660)
                       .||||+|||+|++|+||.|+++||.||+|++++|++|+|.+||++|.+||.|.+|+|+|....+.++|+|+++++....
T Consensus       484 ~~dgw~~TGDlg~~d~dG~l~i~GR~kd~ik~~~G~~V~p~eIE~~l~~~p~V~~a~V~g~~~~~~~~A~vv~~~~~~~~  563 (651)
T PLN02736        484 DEDGWLHTGDIGLWLPGGRLKIIDRKKNIFKLAQGEYIAPEKIENVYAKCKFVAQCFVYGDSLNSSLVAVVVVDPEVLKA  563 (651)
T ss_pred             ccCCCeeccceEEEcCCCcEEEEEechhheEcCCCcEechHHHHHHHhcCCCeeEEEEEecCCCceeEEEEEeCHHHHHH
Confidence             6999999999999999999999999999997689999999999999999999999999976667999999999998888


Q ss_pred             HHHHCCC-CCcHHHHhccHHHHHHHHHHHHHHHHhCCCCCceeeeEEEEecCCCCCCCCccccccccchHHHHHHHHHHH
Q 006111          570 WAYSNGH-AGSFLELCSLVQLQNYILSELKNAAERNKLRGFEHIKGVILDPRPFDMERDLVTATLKKKRNKLLIYYQVEI  648 (660)
Q Consensus       570 ~~~~~~~-~~~~~~~~~~~~~~~~~~~~l~~~~~~~~l~~~~~p~~i~~~~~~~~~~~~P~t~~GKv~R~~l~~~~~~~i  648 (660)
                      |....+. ..++.+++.++++++.+.+.|.+.+++..|+.|++|+.|.+++++|+++..++|++||++|++++++|.++|
T Consensus       564 ~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~lT~~~Ki~R~~i~~~~~~~i  643 (651)
T PLN02736        564 WAASEGIKYEDLKQLCNDPRVRAAVLADMDAVGREAQLRGFEFAKAVTLVPEPFTVENGLLTPTFKVKRPQAKAYFAKAI  643 (651)
T ss_pred             HHHHcCCCccCHHHHhcCHHHHHHHHHHHHHHHHhcCCCcceeeeEEEEeCCCCcCCCCcCChhhhhhHHHHHHHHHHHH
Confidence            8877776 577899999999999999999999887789999999999999999999999999999999999999999999


Q ss_pred             HHHHhhh
Q 006111          649 DQLYEKL  655 (660)
Q Consensus       649 ~~~y~~~  655 (660)
                      ++||...
T Consensus       644 ~~~y~~~  650 (651)
T PLN02736        644 SDMYAEL  650 (651)
T ss_pred             HHHHhhc
Confidence            9999764

>PLN02387 long-chain-fatty-acid-CoA ligase family protein

Probab=100.00  E-value=3.9e-79  Score=689.33  Aligned_cols=627  Identities=35%  Similarity=0.579  Sum_probs=517.3

Q ss_pred             CCCceeccccCCCCCCCCCCCCcHHHHHHHHHHhCCCCCceeeeccc--------cC------CCCCceEEeHHHHHHHH
Q 006111           21 VGPVYRNLLASNGFPSVDSDLNTAWDIFSMSVQKYPGNRMLGWRPFV--------DG------KFGPYVWKTYKEVYEEV   86 (660)
Q Consensus        21 ~~~~~~~~~~~~~~~~~~~~~~ti~~~l~~~a~~~pd~~a~~~~~~~--------d~------~~~~~~~~Ty~ql~~~v   86 (660)
                      ++.+||+...+.-.....+...|+.++|++.++++||++|+......        ++      ..++|+.+||+||.+++
T Consensus        37 ~~~~~r~~~~~~~~~~~~~~~~t~~~l~~~~~~~~pd~~al~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~Ty~el~~~v  116 (696)
T PLN02387         37 PGYAIRNARFPELVETPWEGATTLAALFEQSCKKYSDKRLLGTRKLISREFETSSDGRKFEKLHLGEYEWITYGQVFERV  116 (696)
T ss_pred             CCCceecCccccccccCCCCCCCHHHHHHHHHHHCCCCceEEEecccccccccccCCcccccccCCCcEEEEHHHHHHHH
Confidence            33459999966333334467889999999999999999999542110        11      12567889999999999


Q ss_pred             HHHHHHHHHcCCCCCCEEEEEeCCchhHHHHHHHHHhCCCeEEecCCCCChhHHHHHHhcccceEEEEccchhhhhhccc
Q 006111           87 LQIVSALRASGAEPGCRVGIYGANCPQWVEAMEACNALSLICVPLYDTLGPGAVNFILDHAEIDFVFVQDKKVKELLSPD  166 (660)
Q Consensus        87 ~~lA~~L~~~Gl~~gd~V~l~~~n~~e~~~~~lA~~~~G~~~vpl~~~~~~~~l~~~l~~~~~~~ii~~~~~~~~~~~~~  166 (660)
                      +++|++|.+.|+++||+|+|+++|+++|+++++||+++|++++|+++.++.+++.++|++++++++|++.+....+....
T Consensus       117 ~~lA~~L~~lG~~~gd~Vai~~~n~~e~~~~~lA~~~~G~v~vpl~~~~~~~~l~~il~~s~~~~li~~~~~~~~l~~~~  196 (696)
T PLN02387        117 CNFASGLVALGHNKEERVAIFADTRAEWLIALQGCFRQNITVVTIYASLGEEALCHSLNETEVTTVICDSKQLKKLIDIS  196 (696)
T ss_pred             HHHHHHHHHhCCCCCCEEEEEcCCCHHHHHHHHHHHHcCCeEEEecCCCCHHHHHHHHHccCCCEEEECHHHHHHHHHHh
Confidence            99999999999999999999999999999999999999999999999999999999999999999999987766554432


Q ss_pred             cccccCccEEEEecCCcHHHHHH-HhhCCcceeeHHHHHhcCccCCccCCCCCCCceEEEEecCCCCCCCceeeecchhH
Q 006111          167 CRSAQRLRVMVCFTSLTAEQKEM-AVQTGIKPYSWDEFLHLGKVNEMEILPPQPFNICTIMYTSGTSGDPKGVVLTHETI  245 (660)
Q Consensus       167 ~~~~~~~~~i~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~TSGTTG~pK~v~~th~~l  245 (660)
                       ...+.+..++.+++........ .........+|.++...+...........++|+++|+|||||||.||||++||+++
T Consensus       197 -~~~~~l~~ii~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dd~a~I~yTSGTTG~PKGV~lth~~l  275 (696)
T PLN02387        197 -SQLETVKRVIYMDDEGVDSDSSLSGSSNWTVSSFSEVEKLGKENPVDPDLPSPNDIAVIMYTSGSTGLPKGVMMTHGNI  275 (696)
T ss_pred             -hccCCceEEEEECCCCchhhhhhhccCCcEEEEHHHHHHhhccCCCCCCCCCccceEEEEecCCCCCCCCEEEEEcHHH
Confidence             2345667788877543211110 01123345678877765533332333456899999999999999999999999999


Q ss_pred             HHHhhhhhhhcccccCCCCCCcEEEEecChhHHHHHHHHHHHhhcCcEEEEecC----C-----hhhHHHHhhhhcCeEE
Q 006111          246 ATFVSGVDLFLDQFEDKMTVDDVYLSFLPLAHILDRVIEEYFFRRGASVGYYHG----D-----LNALRDDLMELKPTLL  316 (660)
Q Consensus       246 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~pl~~~~g~~~~l~~l~~G~~~v~~~~----~-----~~~~~~~i~~~~~t~~  316 (660)
                      ++.+......+    ..+..+|++++++|++|++++...+.+++.|+++.+...    +     +..++..+++++||++
T Consensus       276 ~~~~~~~~~~~----~~~~~~d~~l~~lPl~Hi~~~~~~~~~~~~g~~i~~g~~~~l~~~~~~~~~~~~~~i~~~~pT~~  351 (696)
T PLN02387        276 VATVAGVMTVV----PKLGKNDVYLAYLPLAHILELAAESVMAAVGAAIGYGSPLTLTDTSNKIKKGTKGDASALKPTLM  351 (696)
T ss_pred             HHHHHHHHhhc----CCCCCCCEEEEECcHHHHHHHHHHHHHHHhCCEEEECChhhhcccccccccCchhhHHHhCCcEE
Confidence            98887654432    146788999999999999998877667777887765432    1     2345678999999999


Q ss_pred             EechHHHHHHHHHHHHHHHhhchHHHHHHHHHHHHHHHHHhhCCC--CCCcchhhhHHHHHHHHHHhCCcEeEEEEccCC
Q 006111          317 AGVPRVFEKIHEGIKKALEELRPLRRRIFDALYKYKLAWMNMGYK--QREASPLADLLAFRKVKARLGGRLRLVISGGAP  394 (660)
Q Consensus       317 ~~~p~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~lr~i~~~G~~  394 (660)
                      +++|.+++++.+...........+.+.++..+...+...+...+.  ....+.+++.+.+.+++..+++++|.+++||++
T Consensus       352 ~~vP~~l~~l~~~~~~~~~~~~~~~~~l~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lg~~lr~i~~GGap  431 (696)
T PLN02387        352 TAVPAILDRVRDGVRKKVDAKGGLAKKLFDIAYKRRLAAIEGSWFGAWGLEKLLWDALVFKKIRAVLGGRIRFMLSGGAP  431 (696)
T ss_pred             EehhHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHhccCCcccccccchhhHHHHHHHHHHHhCCcEEEEEEcCCC
Confidence            999999999998877666666777777888777666554432110  123567889999999999999999999999999


Q ss_pred             CCHHHHHHHHHhcCCceeeecCCCCCCCceecccCCCccccCccCCCccCeeEEeeecCCCCCCCC-CCCCCceEEEccC
Q 006111          395 LSTEVEEFLRVTCCAFLVQGYGLTETCGPTTVCFPDEMCMVGTAGPVSVYSELRLEEVPEMGYSPL-DDPPCGEVCVRGK  473 (660)
Q Consensus       395 l~~~~~~~~~~~~~~~v~~~YG~tE~~~~~~~~~~~~~~~~~~~G~~~~~~~v~ivd~~~~~~~~~-~~~~~Gei~v~g~  473 (660)
                      +++++.+.++..+|++++++||+||+++.++.....+. ..+++|.|+++++++|+|.++++.... ..++.|||+|+||
T Consensus       432 l~~~~~~~~~~~~g~~v~~~YG~TEt~~~~~~~~~~~~-~~gsvG~p~p~~evkivd~~~~~~~~~~~~~p~GEi~vrGp  510 (696)
T PLN02387        432 LSGDTQRFINICLGAPIGQGYGLTETCAGATFSEWDDT-SVGRVGPPLPCCYVKLVSWEEGGYLISDKPMPRGEIVIGGP  510 (696)
T ss_pred             CCHHHHHHHHHHcCCCeeEeechhhcccceeecCcccC-CCCccCCCCCceEEEEeeccccCcccCCCCCCCceEEeccC
Confidence            99999988887789999999999999887766554433 348999999999999999555543322 2335799999999


Q ss_pred             CcccccCCCchhhhhccc---CC--ccccCceEEECCCCcEEEEeccCCeeEcCCCeeecchhHHHHHhcCcCcceEEEE
Q 006111          474 TLFSGYYKNPDLTRESII---DG--WFHTGDIGQILPNGVVKIIDRKKNLIKISQGEYVALEYLENVYCVAPIIEDIWVY  548 (660)
Q Consensus       474 ~~~~gy~~~~~~~~~~~~---~g--~~~TGDl~~~~~~G~l~~~GR~~d~i~~~~G~~v~~~~iE~~l~~~p~V~~~~V~  548 (660)
                      +++.||+++++.+.+.|.   +|  ||+|||+|++|+||+|++.||.||+||+++|++|+|.+||++|.+||.|.+|+|+
T Consensus       511 ~v~~GY~~~pe~T~~~f~~d~~G~~W~~TGDig~~d~dG~l~i~gR~kd~ik~~~Ge~I~p~eIE~~l~~~p~V~~~~V~  590 (696)
T PLN02387        511 SVTLGYFKNQEKTDEVYKVDERGMRWFYTGDIGQFHPDGCLEIIDRKKDIVKLQHGEYVSLGKVEAALSVSPYVDNIMVH  590 (696)
T ss_pred             cccchhcCCHHHHhhhhccccCCCceeecCceEEECCCCcEEEEEcccceEECCCCeEEchHHHHHHHhcCCCeeEEEEE
Confidence            999999999999999982   35  9999999999999999999999999998679999999999999999999999999


Q ss_pred             ecCCCCeEEEEEEcChhhHHHHHHHCCC-CCcHHHHhccHHHHHHHHHHHHHHHHhCCCCCceeeeEEEEecCCCCCCCC
Q 006111          549 GDSLKSMLVAVVVPCEEDTKKWAYSNGH-AGSFLELCSLVQLQNYILSELKNAAERNKLRGFEHIKGVILDPRPFDMERD  627 (660)
Q Consensus       549 ~~~~~~~~~a~v~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~l~~~~~~~~l~~~~~p~~i~~~~~~~~~~~~  627 (660)
                      |.+....++|+|+++++....|+...+. ..++.+++.++++.+.+.+.+.+..++.+|+.|++|+.|.++++||+++..
T Consensus       591 g~~~~~~~~a~vv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~e~~~~i~l~~~~~t~~~g  670 (696)
T PLN02387        591 ADPFHSYCVALVVPSQQALEKWAKKAGIDYSNFAELCEKEEAVKEVQQSLSKAAKAARLEKFEIPAKIKLLPEPWTPESG  670 (696)
T ss_pred             ecCCcceEEEEEEeCHHHHHHHHHHcCCCCCCHHHHhcCHHHHHHHHHHHHHHHHHcCCCCcceeeEEEEECCCCCCCCC
Confidence            9887788999999999999999988877 467899999999999999999999887899999999999999999999999


Q ss_pred             ccccccccchHHHHHHHHHHHHHHHh
Q 006111          628 LVTATLKKKRNKLLIYYQVEIDQLYE  653 (660)
Q Consensus       628 P~t~~GKv~R~~l~~~~~~~i~~~y~  653 (660)
                      -+||++|++|+.+.+.|+++|++||.
T Consensus       671 ~lT~t~K~~R~~i~~~y~~~i~~ly~  696 (696)
T PLN02387        671 LVTAALKLKREQIRKKFKDDLKKLYE  696 (696)
T ss_pred             cCChhhhhhhHHHHHHHHHHHHHHhC
Confidence            99999999999999999999999994

>PTZ00342 acyl-CoA synthetase; Provisional

Probab=100.00  E-value=7.3e-79  Score=681.29  Aligned_cols=615  Identities=25%  Similarity=0.389  Sum_probs=500.2

Q ss_pred             CCCCceeccccCCCCCCCCCCCCcHHHHHHHHHHhCCCCCceeeeccccCCCCCceEEeHHHHHHHHHHHHHHHHHc---
Q 006111           20 SVGPVYRNLLASNGFPSVDSDLNTAWDIFSMSVQKYPGNRMLGWRPFVDGKFGPYVWKTYKEVYEEVLQIVSALRAS---   96 (660)
Q Consensus        20 ~~~~~~~~~~~~~~~~~~~~~~~ti~~~l~~~a~~~pd~~a~~~~~~~d~~~~~~~~~Ty~ql~~~v~~lA~~L~~~---   96 (660)
                      .++++||.......  +......||.++|.++++++|+++|+++.   + .+..++++||+||.+++.++|++|.+.   
T Consensus        41 ~~~~~~~~~~~~~~--~~~~~~~~l~~~l~~~~~~~p~~~Al~~~---~-~g~~~~~~Ty~el~~~v~~~A~~L~~~~~~  114 (746)
T PTZ00342         41 NESSVYCMKDHKKK--SSLYVYKHIMKLLLEKYKLNNNKIAIVEH---S-CGEPQNYITYGNFFKKVLSFSHSLNTYEGK  114 (746)
T ss_pred             CCCCceecCchhhc--ccccccchHHHHHHHHHhhcCCceeEecc---C-CCCCceeeeHHHHHHHHHHHHHHHHHHhhc
Confidence            44559998887776  33455889999999999999999999864   2 223468999999999999999999974   


Q ss_pred             CCCCC-----------CEEEEEeCCchhHHHHHHHHHhCCCeEEecCCCCChhHHHHHHhcccceEEEEccchhhhhhcc
Q 006111           97 GAEPG-----------CRVGIYGANCPQWVEAMEACNALSLICVPLYDTLGPGAVNFILDHAEIDFVFVQDKKVKELLSP  165 (660)
Q Consensus        97 Gl~~g-----------d~V~l~~~n~~e~~~~~lA~~~~G~~~vpl~~~~~~~~l~~~l~~~~~~~ii~~~~~~~~~~~~  165 (660)
                      |+++|           |+|+|+++|+++|+++.+||+++|++.+|+++.++.+++.++|++++++++|++.+....+.+.
T Consensus       115 Gv~~g~~~~~~~~g~~d~V~i~~~N~~ew~~~~lA~~~~Gav~Vpl~~~~~~~el~~il~~s~~~~lv~~~~~~~~l~~~  194 (746)
T PTZ00342        115 GIPEKKYNEEQNNGKFKLLGLYGSNSINWLVADLACMLSGVTTLVMHSKFSIDVIVDILNETKLEWLCLDLDLVEGLLER  194 (746)
T ss_pred             CCCcCccccccccccccEEEEEcCCCHHHHHHHHHHHHcCCeEEEecCCCCHHHHHHHHhcCCCCEEEEcHHHHHHHHHh
Confidence            99999           9999999999999999999999999999999999999999999999999999987776665443


Q ss_pred             ccccccCccEEEEecCCcHH-------------------HH-----------------------------------HH--
Q 006111          166 DCRSAQRLRVMVCFTSLTAE-------------------QK-----------------------------------EM--  189 (660)
Q Consensus       166 ~~~~~~~~~~i~~~~~~~~~-------------------~~-----------------------------------~~--  189 (660)
                      . ...+.++.++.++.....                   ..                                   ..  
T Consensus       195 ~-~~~~~l~~ii~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~  273 (746)
T PTZ00342        195 K-NELPHLKKLIILDTLIKSKEININKEEKNNGSNVNNNGNKNNKEEQKGNDLSNELEDISLGPLEYDKEKLEKIKDLKE  273 (746)
T ss_pred             h-ccCCCceEEEEECCCCcccccccccccccccccccccccccccccccccccccccccccccccccchhhhhhhHHHHH
Confidence            2 234567777777652110                   00                                   00  


Q ss_pred             -HhhCCcceeeHHHHHhcCccCCccCCCCCCCceEEEEecCCCCCCCceeeecchhHHHHhhhhhhhcccccCCCCCCcE
Q 006111          190 -AVQTGIKPYSWDEFLHLGKVNEMEILPPQPFNICTIMYTSGTSGDPKGVVLTHETIATFVSGVDLFLDQFEDKMTVDDV  268 (660)
Q Consensus       190 -~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~TSGTTG~pK~v~~th~~l~~~~~~~~~~~~~~~~~~~~~~~  268 (660)
                       ....+.....|.++.... .......+..++|+++|+|||||||.||||++||+++++.+.......   .......++
T Consensus       274 ~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~dd~a~IiYTSGTTG~PKGVmlTH~nl~~~~~~~~~~~---~~~~~~~d~  349 (746)
T PTZ00342        274 KAKKLGISIILFDDMTKNK-TTNYKIQNEDPDFITSIVYTSGTSGKPKGVMLSNKNLYNTVVPLCKHS---IFKKYNPKT  349 (746)
T ss_pred             HhhcCCCEEEEHHHHHhhc-ccCCCCCCCCccceEEEEEcCCCCCCCCEEEEccHHHHHHHHHHhhcc---cccCCCCCe
Confidence             001112233444444332 111223345689999999999999999999999999998876543221   001234589


Q ss_pred             EEEecChhHHHHHHHHHHHhhcCcEEEEecCChhhHHHHhhhhcCeEEEechHHHHHHHHHHHHHHHhhchHHHHHHHHH
Q 006111          269 YLSFLPLAHILDRVIEEYFFRRGASVGYYHGDLNALRDDLMELKPTLLAGVPRVFEKIHEGIKKALEELRPLRRRIFDAL  348 (660)
Q Consensus       269 ~l~~~pl~~~~g~~~~l~~l~~G~~~v~~~~~~~~~~~~i~~~~~t~~~~~p~~~~~l~~~~~~~~~~~~~~~~~~~~~~  348 (660)
                      +++++|++|++++...+.+++.|+++++.+.++..+++.|++++||+++++|.+|++|.+.........+.+.+.+++++
T Consensus       350 ~ls~LPL~Hi~~~~~~~~~l~~G~~i~~~~~~~~~l~~di~~~~pT~~~~VP~v~~~i~~~i~~~~~~~~~~~~~~~~~a  429 (746)
T PTZ00342        350 HLSYLPISHIYERVIAYLSFMLGGTINIWSKDINYFSKDIYNSKGNILAGVPKVFNRIYTNIMTEINNLPPLKRFLVKKI  429 (746)
T ss_pred             EEEeCcHHHHHHHHHHHHHHHcCCEEEEeCCCHHHHHHHHHHhCCcEEEchHHHHHHHHHHHHHHHhhcCHHHHHHHHHH
Confidence            99999999999998778889999999998778999999999999999999999999999887777777777777788888


Q ss_pred             HHHHHHHHhhCCCCCCcchhhhHH--HHHHHHHHhCCcEeEEEEccCCCCHHHHHHHHHhcCCceeeecCCCCCCCceec
Q 006111          349 YKYKLAWMNMGYKQREASPLADLL--AFRKVKARLGGRLRLVISGGAPLSTEVEEFLRVTCCAFLVQGYGLTETCGPTTV  426 (660)
Q Consensus       349 ~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~lr~i~~~G~~l~~~~~~~~~~~~~~~v~~~YG~tE~~~~~~~  426 (660)
                      ...+..... |.    ..++++.+  .++++++.+++++|.+++||+++++++.+.|+..+|++++++||+||+++..+.
T Consensus       430 ~~~~~~~~~-~~----~~~~~~~~~~v~~kir~~lg~~lr~~~sGGapl~~~~~~~~~~~~g~~i~~gYGlTEt~~~~~~  504 (746)
T PTZ00342        430 LSLRKSNNN-GG----FSKFLEGITHISSKIKDKVNPNLEVILNGGGKLSPKIAEELSVLLNVNYYQGYGLTETTGPIFV  504 (746)
T ss_pred             HHHHHHhhc-CC----cchHHHHHHHHHHHHHHhhCCCeEEEEEcCCCCCHHHHHHHHHhcCCCEEEeeccCcccceeee
Confidence            766655322 21    23344443  478889999999999999999999999999998889999999999999877766


Q ss_pred             ccCCCccccCccCCCc-cCeeEEeeecCCCCCCCCCCCCCceEEEccCCcccccCCCchhhhhcc-cCCccccCceEEEC
Q 006111          427 CFPDEMCMVGTAGPVS-VYSELRLEEVPEMGYSPLDDPPCGEVCVRGKTLFSGYYKNPDLTRESI-IDGWFHTGDIGQIL  504 (660)
Q Consensus       427 ~~~~~~~~~~~~G~~~-~~~~v~ivd~~~~~~~~~~~~~~Gei~v~g~~~~~gy~~~~~~~~~~~-~~g~~~TGDl~~~~  504 (660)
                      ..... ...+++|.|+ |+++++++|.++...  .+.++.|||+++||.++.|||++++.|++.| .||||+|||+|++|
T Consensus       505 ~~~~~-~~~gsvG~p~~pg~e~ki~d~~~~~~--~~~~~~GEl~vrGp~v~~GY~~~pe~T~~~f~~dGW~~TGDig~~d  581 (746)
T PTZ00342        505 QHADD-NNTESIGGPISPNTKYKVRTWETYKA--TDTLPKGELLIKSDSIFSGYFLEKEQTKNAFTEDGYFKTGDIVQIN  581 (746)
T ss_pred             ccCCC-CCcccccCcCCCcEEEEEeccccccc--CCCCCceEEEEecCcccccccCChhhhhhhcCcCCcccCCcEEEEC
Confidence            55443 3458999998 999999998433221  1233579999999999999999999999999 69999999999999


Q ss_pred             CCCcEEEEeccCCeeEcCCCeeecchhHHHHHhcCcCcceEEEEecCCCCeEEEEEEcChhhHHHHHHHCC------C-C
Q 006111          505 PNGVVKIIDRKKNLIKISQGEYVALEYLENVYCVAPIIEDIWVYGDSLKSMLVAVVVPCEEDTKKWAYSNG------H-A  577 (660)
Q Consensus       505 ~~G~l~~~GR~~d~i~~~~G~~v~~~~iE~~l~~~p~V~~~~V~~~~~~~~~~a~v~~~~~~~~~~~~~~~------~-~  577 (660)
                      +||+|+++||++|+|++++|++|+|.+||++|.+||.|.+|+|+|......++|+|+++.+....|+...+      . .
T Consensus       582 ~dG~l~i~gR~kdlIkls~Ge~I~p~eIE~~l~~~p~V~~~~VvG~~~~~~~~Alvv~d~~~~~~~a~~~~~~~~~~i~~  661 (746)
T PTZ00342        582 KNGSLTFLDRSKGLVKLSQGEYIETDMLNNLYSQISFINFCVVYGDDSMDGPLAIISVDKYLLFKCLKDDNMLESTGINE  661 (746)
T ss_pred             CCCeEEEEccCCCeEEeCCCEEEchHHHHHHHhcCCCccEEEEEccCCccccEEEEECCHHHHHHHHHhcCCccccccCc
Confidence            99999999999999998789999999999999999999999999987677999999999999999987643      2 2


Q ss_pred             CcHHH-----HhccHHHHHHHHHHHHHHHHhCCCCCceeeeEEEEecCCCCCCCCccccccccchHHHHHHHH---HHHH
Q 006111          578 GSFLE-----LCSLVQLQNYILSELKNAAERNKLRGFEHIKGVILDPRPFDMERDLVTATLKKKRNKLLIYYQ---VEID  649 (660)
Q Consensus       578 ~~~~~-----~~~~~~~~~~~~~~l~~~~~~~~l~~~~~p~~i~~~~~~~~~~~~P~t~~GKv~R~~l~~~~~---~~i~  649 (660)
                      .++.+     .+.+.++.+.+.+++.+..++..|+.|.+++.|.+++++|+++. -+||+.|++|+.+.+.|+   +.|+
T Consensus       662 ~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~e~i~~~~l~~~~~t~~~-~lTpt~KlkR~~v~~~y~~~i~~i~  740 (746)
T PTZ00342        662 KNYLEKLTDETINNNIYVDYVKGKMLEVYKKTNLNRYNIINDIYLTSKVWDTNN-YLTPTFKVKRFYVFKDYAFFIDQVK  740 (746)
T ss_pred             ccHHHHhhhhhhccHHHHHHHHHHHHHHHHHhCCccceeeeeEEEecCCCCCCC-ccChhhhhhHHHHHHHHHHHHHHHH
Confidence            33444     34556789999999999977779999999999999999999976 699999999999999999   6777


Q ss_pred             HHHhh
Q 006111          650 QLYEK  654 (660)
Q Consensus       650 ~~y~~  654 (660)
                      +||.+
T Consensus       741 ~~y~~  745 (746)
T PTZ00342        741 KIYKN  745 (746)
T ss_pred             HHhcC
Confidence            77764

>KOG1180 consensus Acyl-CoA synthetase [Lipid transport and metabolism]

Probab=100.00  E-value=1.8e-79  Score=610.65  Aligned_cols=629  Identities=37%  Similarity=0.655  Sum_probs=561.4

Q ss_pred             CCCCCCCceeccccCCCCCCCCC-CCCcHHHHHHHHHHhCCCCCceeeecc--------ccCC------CCCceEEeHHH
Q 006111           17 GKPSVGPVYRNLLASNGFPSVDS-DLNTAWDIFSMSVQKYPGNRMLGWRPF--------VDGK------FGPYVWKTYKE   81 (660)
Q Consensus        17 ~~~~~~~~~~~~~~~~~~~~~~~-~~~ti~~~l~~~a~~~pd~~a~~~~~~--------~d~~------~~~~~~~Ty~q   81 (660)
                      +.+.++.+|||..+..|+-+.+. ...|+.++|++.++++.++.++-..++        +|++      -+++..+||.|
T Consensus        15 ~n~~e~~p~Rnv~~~~~L~~~~~~g~~Tl~~~~~~~~~k~g~~~~mGtR~li~~h~ek~~dGK~f~k~~Lg~Y~w~sy~e   94 (678)
T KOG1180|consen   15 ANEHETAPYRNVRSFDGLVSPPNPGASTLYELFEECVKKFGKKDAMGTRELIKEHEEKQVDGKTFEKYELGDYKWMSYNE   94 (678)
T ss_pred             CCCCCCccccccccCCCccCCCCCCcccHHHHHHHHHHhcCCCccccHHHHHHHHhhccCCCeEEEEEeccceeeecHHH
Confidence            35678999999998887776554 478999999999999999999976533        2332      34567899999


Q ss_pred             HHHHHHHHHHHHHHcCCCCCCE-EEEEeCCchhHHHHHHHHHhCCCeEEecCCCCChhHHHHHHhcccceEEEEccchhh
Q 006111           82 VYEEVLQIVSALRASGAEPGCR-VGIYGANCPQWVEAMEACNALSLICVPLYDTLGPGAVNFILDHAEIDFVFVQDKKVK  160 (660)
Q Consensus        82 l~~~v~~lA~~L~~~Gl~~gd~-V~l~~~n~~e~~~~~lA~~~~G~~~vpl~~~~~~~~l~~~l~~~~~~~ii~~~~~~~  160 (660)
                      +..++..+|++|.+.|++++++ ++|+++.+.+|+++++||++.+..+|.+..++..+.+.+-|++++++.+|++.+...
T Consensus        95 v~~~~~~~gsGL~~lG~k~~e~k~~iFa~TraeWm~ta~gC~~q~ipvVT~Y~TLGeeal~hsl~Et~~~~i~T~~~LL~  174 (678)
T KOG1180|consen   95 VYERVHNFGSGLVKLGLKPKETKIAIFAETRAEWMITAQGCFSQNIPVVTAYATLGEEALIHSLNETESTAIFTDSELLP  174 (678)
T ss_pred             HHHHHHHHHHHHHHhCCCCCCCeEEEEecchHHHHHHHHHHHhcCCeEEEEehhcChhhhhhhhccccceEEEeCHHHHH
Confidence            9999999999999999997777 999999999999999999999999999999999999999999999999999999988


Q ss_pred             hhhccccccccCccEEEEecCCc----HHHHHHHhhCCcceeeHHHHHhcCccCCccCCCCCCCceEEEEecCCCCCCCc
Q 006111          161 ELLSPDCRSAQRLRVMVCFTSLT----AEQKEMAVQTGIKPYSWDEFLHLGKVNEMEILPPQPFNICTIMYTSGTSGDPK  236 (660)
Q Consensus       161 ~~~~~~~~~~~~~~~i~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~TSGTTG~pK  236 (660)
                      .+...+ .....++.+|.++..+    .+........+..+.+++++.+.++....+..++.|+|+|+|||||||||.||
T Consensus       175 kl~~~l-~~~~~vk~II~~d~id~~~~~~~v~~i~~p~i~i~Sf~~v~~lG~~~~~~~~~P~p~Dia~IMYTSGSTG~PK  253 (678)
T KOG1180|consen  175 KLKAPL-KQAKTVKHIIYFDPIDYDAAKDDVNSIVRPDIKIISFDDVEKLGKENEIPPHPPKPSDIACIMYTSGSTGLPK  253 (678)
T ss_pred             HHHHHH-hccCceeEEEEecCCCCccchhhhhhhccCCeEEEEHHHHHhhCCcCCCCCCCCCCCceEEEEEcCCCCCCCc
Confidence            665444 3568899999999532    22222223467899999999999987766666778999999999999999999


Q ss_pred             eeeecchhHHHHhhhhhhhcccccCCCCCCcEEEEecChhHHHHHHHHHHHhhcCcEEEEecC-Chh----hH----HHH
Q 006111          237 GVVLTHETIATFVSGVDLFLDQFEDKMTVDDVYLSFLPLAHILDRVIEEYFFRRGASVGYYHG-DLN----AL----RDD  307 (660)
Q Consensus       237 ~v~~th~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~pl~~~~g~~~~l~~l~~G~~~v~~~~-~~~----~~----~~~  307 (660)
                      ||+++|+|+++.+........    .+++.|+++.++||.|++.+.+-+.+++.|+.+-..+. +..    .+    -..
T Consensus       254 GVml~H~NiVA~~~G~~~~v~----~lg~~D~yi~yLPLAHIlEl~aE~~~ft~G~~iGY~S~~TLtdts~ki~kg~kGD  329 (678)
T KOG1180|consen  254 GVMLTHSNIVAGVTGVGENVP----ELGPKDRYIAYLPLAHILELTAELVCFTWGGRIGYSSPLTLTDTSSKIKKGCKGD  329 (678)
T ss_pred             eEEEecccHHhhhhhhcccCc----ccCCCceEEEechHHHHHHHHHHHHHHhhCCEeecCCcceecccchhhccCCcCc
Confidence            999999999999988765442    68899999999999999999999999999999987654 111    11    123


Q ss_pred             hhhhcCeEEEechHHHHHHHHHHHHHHHhhchHHHHHHHHHHHHHHHHHhhCCCCCCcchhhhHHHHHHHHHHhCCcEeE
Q 006111          308 LMELKPTLLAGVPRVFEKIHEGIKKALEELRPLRRRIFDALYKYKLAWMNMGYKQREASPLADLLAFRKVKARLGGRLRL  387 (660)
Q Consensus       308 i~~~~~t~~~~~p~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lr~  387 (660)
                      +...|||+|.++|.+|+++-+...+.....+.+.+.+|..++..+...++.   .....++++.+.|.+++..+|.+||.
T Consensus       330 ~~~lkPTiM~~VpAV~drVrKgVl~kV~~~~~~~k~lF~~aY~~K~~~~~~---~g~~s~~ld~lVFkKIr~~lGG~lR~  406 (678)
T KOG1180|consen  330 LTELKPTIMAAVPAVMDRVRKGVLSKVNAMPGLQKKLFWTAYERKLSLIER---NGPGSPLLDALVFKKIRALLGGNLRY  406 (678)
T ss_pred             cccccchhhhhhHHHHHHHHHHHHHHHhhchHHHHHHHHHHHHHHHHHHhc---cCCchhhHHHHHHHHHHHHhCCceEE
Confidence            457899999999999999999999999999999999999999877776662   13457799999999999999999999


Q ss_pred             EEEccCCCCHHHHHHHHHhcCCceeeecCCCCCCCceecccCCCccccCccCCCccCeeEEeeecCCCCCCCCCCCCCce
Q 006111          388 VISGGAPLSTEVEEFLRVTCCAFLVQGYGLTETCGPTTVCFPDEMCMVGTAGPVSVYSELRLEEVPEMGYSPLDDPPCGE  467 (660)
Q Consensus       388 i~~~G~~l~~~~~~~~~~~~~~~v~~~YG~tE~~~~~~~~~~~~~~~~~~~G~~~~~~~v~ivd~~~~~~~~~~~~~~Ge  467 (660)
                      +++||++++++..+.+.--+.+|+.++||.||++...+.....+... +.+|.|++.++++++|.++++....+....||
T Consensus       407 ~LsGGapLS~dtQrF~nic~C~Pv~qGYGLTEtca~~tv~e~~d~~~-g~vG~pl~c~eiKLvdw~EgGY~~~~~PPrGE  485 (678)
T KOG1180|consen  407 ILSGGAPLSPDTQRFMNICFCCPVLQGYGLTETCAAATVLEPEDFST-GRVGAPLPCCEIKLVDWEEGGYFAKNKPPRGE  485 (678)
T ss_pred             EEeCCCCCCHHHHHHHHHhccccccccccccchhcccEecChhhccc-ccccCCccceEEEEEEhhhcCccCCCCCCCce
Confidence            99999999999999888877999999999999999988887776665 89999999999999999999988877667899


Q ss_pred             EEEccCCcccccCCCchhhhhcc--cCC--ccccCceEEECCCCcEEEEeccCCeeEcCCCeeecchhHHHHHhcCcCcc
Q 006111          468 VCVRGKTLFSGYYKNPDLTRESI--IDG--WFHTGDIGQILPNGVVKIIDRKKNLIKISQGEYVALEYLENVYCVAPIIE  543 (660)
Q Consensus       468 i~v~g~~~~~gy~~~~~~~~~~~--~~g--~~~TGDl~~~~~~G~l~~~GR~~d~i~~~~G~~v~~~~iE~~l~~~p~V~  543 (660)
                      ||++|+.+..||+++++.|.+.|  .||  ||+|||+|++.+||+|.+.+|++|++|+.+|+.|+++-+|++++..|.|.
T Consensus       486 I~i~G~~vt~gY~kn~ekT~e~ft~~~G~~WF~TGDIGe~~pdG~LkIIDRKKdLVKlq~GEYIsL~KvEa~l~s~p~V~  565 (678)
T KOG1180|consen  486 ILIGGPNVTMGYYKNEEKTKEDFTVEDGQRWFRTGDIGEFHPDGCLKIIDRKKDLVKLQNGEYISLGKVEAALRSSPYVD  565 (678)
T ss_pred             EEecCCccChhhhCChhhhhhhceecCCcEEEeccccceecCCCcEEEeechhhhhhhcccceeehHHHHHHHhcCcchh
Confidence            99999999999999999999999  489  99999999999999999999999999999999999999999999999999


Q ss_pred             eEEEEecCCCCeEEEEEEcChhhHHHHHHHCCC-CCcHHHHhccHHHHHHHHHHHHHHHHhCCCCCceeeeEEEEecCCC
Q 006111          544 DIWVYGDSLKSMLVAVVVPCEEDTKKWAYSNGH-AGSFLELCSLVQLQNYILSELKNAAERNKLRGFEHIKGVILDPRPF  622 (660)
Q Consensus       544 ~~~V~~~~~~~~~~a~v~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~l~~~~~~~~l~~~~~p~~i~~~~~~~  622 (660)
                      ..+|++......++++||+++.....++...+. ..++.++|.+.++.+.+.++|.++.++++|..+.+|..|++.++||
T Consensus       566 NICvyAd~~~s~~VaiVVPn~~~lt~lA~k~Gi~~~~~e~lc~d~k~~~~v~k~L~~~ak~~~L~~iEip~~I~l~~e~W  645 (678)
T KOG1180|consen  566 NICVYADSNKSKPVAIVVPNQKHLTKLAEKAGISGSTWEELCEDKKVVKAVLKELIEAAKSQKLERIEIPAKIVLSPEPW  645 (678)
T ss_pred             heEEecccccceeEEEEcCCchHHHHHHHHcCCChhhHHHHhccHHHHHHHHHHHHHHHHhcccccccccceeEecCCCc
Confidence            999999988889999999999999999999999 4589999999999999999999999889999999999999999999


Q ss_pred             CCCCCccccccccchHHHHHHHHHHHHHHHhh
Q 006111          623 DMERDLVTATLKKKRNKLLIYYQVEIDQLYEK  654 (660)
Q Consensus       623 ~~~~~P~t~~GKv~R~~l~~~~~~~i~~~y~~  654 (660)
                      +.++.-+|+.-|+.|+.++..|+++||++|++
T Consensus       646 TPenGlvT~A~KLKRk~I~~~~k~ei~~~Y~~  677 (678)
T KOG1180|consen  646 TPENGLVTAALKLKRKEILAAYKKEIDRLYKE  677 (678)
T ss_pred             CCCccccHHHHHhhHHHHHHHHHHHHHHHhcc
Confidence            99999999999999999999999999999985

>PTZ00216 acyl-CoA synthetase; Provisional

Probab=100.00  E-value=1.1e-76  Score=671.07  Aligned_cols=623  Identities=30%  Similarity=0.488  Sum_probs=505.9

Q ss_pred             CCCCCceeccccCC----CCCCCCCCCCcHHHHHHHHHHhCCCCCceeeecc----------ccCC--------CCCceE
Q 006111           19 PSVGPVYRNLLASN----GFPSVDSDLNTAWDIFSMSVQKYPGNRMLGWRPF----------VDGK--------FGPYVW   76 (660)
Q Consensus        19 ~~~~~~~~~~~~~~----~~~~~~~~~~ti~~~l~~~a~~~pd~~a~~~~~~----------~d~~--------~~~~~~   76 (660)
                      +..+++||......    .+.....+..|+.++|.++++++||++|+.+...          .++.        .+++++
T Consensus        42 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~~~~~~~~~~~p~~~a~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  121 (700)
T PTZ00216         42 ENASAIYRIAGVTDEEHERLRNEWYYGPNFLQRLERICKERGDRRALAYRPVERVEKEVVKDADGKERTMEVTHFNETRY  121 (700)
T ss_pred             CCCCCcccCcccccchhcccccccCCCCCHHHHHHHHHHhCCCCCeEEEeccccccccccccCCCccccccccccCCceE
Confidence            34688998765333    2222233567999999999999999999987510          0111        124689


Q ss_pred             EeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEeCCchhHHHHHHHHHhCCCeEEecCCCCChhHHHHHHhcccceEEEEcc
Q 006111           77 KTYKEVYEEVLQIVSALRASGAEPGCRVGIYGANCPQWVEAMEACNALSLICVPLYDTLGPGAVNFILDHAEIDFVFVQD  156 (660)
Q Consensus        77 ~Ty~ql~~~v~~lA~~L~~~Gl~~gd~V~l~~~n~~e~~~~~lA~~~~G~~~vpl~~~~~~~~l~~~l~~~~~~~ii~~~  156 (660)
                      +||+||.++++++|++|.+.|+++||+|+|+++|+++|+++++||+++|++++|+++.++.+++.++|++++++++|++.
T Consensus       122 lTy~el~~~~~~lA~~L~~~Gv~~gd~V~i~~~n~~e~~~~~lA~~~~G~v~vpl~~~~~~~~l~~il~~s~~~~lv~~~  201 (700)
T PTZ00216        122 ITYAELWERIVNFGRGLAELGLTKGSNVAIYEETRWEWLASIYGIWSQSMVAATVYANLGEDALAYALRETECKAIVCNG  201 (700)
T ss_pred             eEHHHHHHHHHHHHHHHHHhCCCCCCEEEEEcCCCHHHHHHHHHHHHcCCeEEeeCCCCCHHHHHhhhhccCccEEEECH
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999988


Q ss_pred             chhhhhhccccccccCccEEEEecCCcHHHHHHHhhCCcceeeHHHHHhcCc--cC-CccCCCCCCCceEEEEecCCCCC
Q 006111          157 KKVKELLSPDCRSAQRLRVMVCFTSLTAEQKEMAVQTGIKPYSWDEFLHLGK--VN-EMEILPPQPFNICTIMYTSGTSG  233 (660)
Q Consensus       157 ~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~-~~~~~~~~~~~~~~i~~TSGTTG  233 (660)
                      .....+.............++++++....    ....+....+|.++...+.  .. .....+..++|+++|+|||||||
T Consensus       202 ~~~~~l~~~~~~~~~~~~~ii~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~a~iiyTSGTTG  277 (700)
T PTZ00216        202 KNVPNLLRLMKSGGMPNTTIIYLDSLPAS----VDTEGCRLVAWTDVVAKGHSAGSHHPLNIPENNDDLALIMYTSGTTG  277 (700)
T ss_pred             HHHHHHHHhhhhccCCceEEEEECCCccc----cccCCceEEEHHHHHHhCCccccccccCCCCCcccEEEEEEeCCCCC
Confidence            76654433222111112245555543211    0112345668888876542  11 11123446899999999999999


Q ss_pred             CCceeeecchhHHHHhhhhhhhcccccCCCCCCcEEEEecChhHHHHHHHHHHHhhcCcEEEEecCChhhHHH-------
Q 006111          234 DPKGVVLTHETIATFVSGVDLFLDQFEDKMTVDDVYLSFLPLAHILDRVIEEYFFRRGASVGYYHGDLNALRD-------  306 (660)
Q Consensus       234 ~pK~v~~th~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~pl~~~~g~~~~l~~l~~G~~~v~~~~~~~~~~~-------  306 (660)
                      .||||++||+++++.+..+...+......+..++++++++|++|.+++......++.|+++++.  ++..+.+       
T Consensus       278 ~PKGV~lth~nl~~~~~~~~~~~~~~~~~~~~~d~~ls~lPl~H~~~~~~~~~~l~~G~~v~~~--~~~~l~~~~~~~~~  355 (700)
T PTZ00216        278 DPKGVMHTHGSLTAGILALEDRLNDLIGPPEEDETYCSYLPLAHIMEFGVTNIFLARGALIGFG--SPRTLTDTFARPHG  355 (700)
T ss_pred             cCcEEEEEhHHHHHHHHHHHhhcccccCCCCCCCEEEEEChHHHHHHHHHHHHHHHcCCEEEEC--CHHHhhhhhccccc
Confidence            9999999999999887765543311111246789999999999999987766667888877663  4555554       


Q ss_pred             HhhhhcCeEEEechHHHHHHHHHHHHHHHhhchHHHHHHHHHHHHHHHHHhhCCCCCCcchhhhHHHHHHHHHHhCCcEe
Q 006111          307 DLMELKPTLLAGVPRVFEKIHEGIKKALEELRPLRRRIFDALYKYKLAWMNMGYKQREASPLADLLAFRKVKARLGGRLR  386 (660)
Q Consensus       307 ~i~~~~~t~~~~~p~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lr  386 (660)
                      .+++++||++.++|.+|+.+.+...........+.+.++..+...+...+..|.    ..+.++.+.++.++..+++++|
T Consensus       356 ~l~~~~pT~~~~vP~~~~~l~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~----~~~~~~~~v~~~~~~~~g~~lr  431 (700)
T PTZ00216        356 DLTEFRPVFLIGVPRIFDTIKKAVEAKLPPVGSLKRRVFDHAYQSRLRALKEGK----DTPYWNEKVFSAPRAVLGGRVR  431 (700)
T ss_pred             hHHHcCCcEEEechHHHHHHHHHHHHHHhccCHHHHHHHHHHHHHHHHHHHcCC----CCchHHHHHHHHHHHHhCCcEE
Confidence            688999999999999999999888777777777778888888777766555442    3457788889999999999999


Q ss_pred             EEEEccCCCCHHHHHHHHHhcCCceeeecCCCCCCCceecccCCCccccCccCCCccCeeEEeeecCCCCCCCCCCCCCc
Q 006111          387 LVISGGAPLSTEVEEFLRVTCCAFLVQGYGLTETCGPTTVCFPDEMCMVGTAGPVSVYSELRLEEVPEMGYSPLDDPPCG  466 (660)
Q Consensus       387 ~i~~~G~~l~~~~~~~~~~~~~~~v~~~YG~tE~~~~~~~~~~~~~~~~~~~G~~~~~~~v~ivd~~~~~~~~~~~~~~G  466 (660)
                      .+++||+++++++.++++..++ +++++||+||+++..+....+.. ..+++|+|+++++++|+| +++.......++.|
T Consensus       432 ~i~~GGa~l~~~~~~~~~~~~~-~l~~~YG~TEt~~~~~~~~~~~~-~~~svG~p~~g~evkI~d-~~~~~~~~~~~~~G  508 (700)
T PTZ00216        432 AMLSGGGPLSAATQEFVNVVFG-MVIQGWGLTETVCCGGIQRTGDL-EPNAVGQLLKGVEMKLLD-TEEYKHTDTPEPRG  508 (700)
T ss_pred             EEEECCCCCCHHHHHHHHHHhh-hHhhccCcccccccccccCCCCC-CCCCcCCcCCCeEEEEee-chhhccCCCCCCCc
Confidence            9999999999999988887778 99999999999877665544433 348999999999999999 44432233344679


Q ss_pred             eEEEccCCcccccCCCchhhhhcc-cCCccccCceEEECCCCcEEEEeccCCeeEcCCCeeecchhHHHHHhcCcCcce-
Q 006111          467 EVCVRGKTLFSGYYKNPDLTRESI-IDGWFHTGDIGQILPNGVVKIIDRKKNLIKISQGEYVALEYLENVYCVAPIIED-  544 (660)
Q Consensus       467 ei~v~g~~~~~gy~~~~~~~~~~~-~~g~~~TGDl~~~~~~G~l~~~GR~~d~i~~~~G~~v~~~~iE~~l~~~p~V~~-  544 (660)
                      ||+|+||+++.||+++++.+.+.| .+|||+|||+|++|+||+|+++||.||+||.++|++|+|.+||+++.+||.|.+ 
T Consensus       509 EL~vrG~~v~~GY~~~pe~T~~~f~~dGw~~TGDig~~d~dG~l~i~GR~kd~ik~~~G~~I~p~eIE~~l~~~p~V~~~  588 (700)
T PTZ00216        509 EILLRGPFLFKGYYKQEELTREVLDEDGWFHTGDVGSIAANGTLRIIGRVKALAKNCLGEYIALEALEALYGQNELVVPN  588 (700)
T ss_pred             eEEEcCCcccchhcCChhHhhhhccccCCeeccceEEEcCCCcEEEEEehHhheecCCCceeccHHHHHHHhcCcCcccc
Confidence            999999999999999999999999 799999999999999999999999999998558999999999999999999997 


Q ss_pred             -EEEEecCCCCeEEEEEEcChhhHHHHHHHCCCCCcHHHHhccHHHHHHHHHHHHHHHHhCCCCCceeeeEEEEecCCCC
Q 006111          545 -IWVYGDSLKSMLVAVVVPCEEDTKKWAYSNGHAGSFLELCSLVQLQNYILSELKNAAERNKLRGFEHIKGVILDPRPFD  623 (660)
Q Consensus       545 -~~V~~~~~~~~~~a~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~l~~~~~p~~i~~~~~~~~  623 (660)
                       ++|+..++...++|+|+++.+....|+...+....+.+++.++++.+.+.+++.+..++..+..|..++.|.+++++|+
T Consensus       589 ~~~v~~~~~~~~l~a~vv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~e~i~~~~~~~~~f~  668 (700)
T PTZ00216        589 GVCVLVHPARSYICALVLTDEAKAMAFAKEHGIEGEYPAILKDPEFQKKATESLQETARAAGRKSFEIVRHVRVLSDEWT  668 (700)
T ss_pred             eEEEEEecCCceEEEEEecCHHHHHHHHHHcCCCCCHHHHhcCHHHHHHHHHHHHHHHHhcCCCCceeEeEEEEECCCCC
Confidence             4555556678999999999999999988887766788999999999999999999988789999999999999999999


Q ss_pred             CCCCccccccccchHHHHHHHHHHHHHHHhh
Q 006111          624 MERDLVTATLKKKRNKLLIYYQVEIDQLYEK  654 (660)
Q Consensus       624 ~~~~P~t~~GKv~R~~l~~~~~~~i~~~y~~  654 (660)
                      ++...+|+++|++|+++++.|+++|++||..
T Consensus       669 ~~~g~lT~t~K~~R~~i~~~y~~~i~~ly~~  699 (700)
T PTZ00216        669 PENGVLTAAMKLKRRVIDERYADLIKELFAD  699 (700)
T ss_pred             CCCCCCChhhccchHHHHHHHHHHHHHHhcC
Confidence            9999999999999999999999999999974

>COG1022 FAA1 Long-chain acyl-CoA synthetases (AMP-forming) [Lipid metabolism]

Probab=100.00  E-value=4.4e-76  Score=626.42  Aligned_cols=584  Identities=36%  Similarity=0.586  Sum_probs=492.8

Q ss_pred             CCCCCcHHHHHHHHHHhCCCCCceeeeccccCCCCCceEEeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEeCCchhHHHH
Q 006111           38 DSDLNTAWDIFSMSVQKYPGNRMLGWRPFVDGKFGPYVWKTYKEVYEEVLQIVSALRASGAEPGCRVGIYGANCPQWVEA  117 (660)
Q Consensus        38 ~~~~~ti~~~l~~~a~~~pd~~a~~~~~~~d~~~~~~~~~Ty~ql~~~v~~lA~~L~~~Gl~~gd~V~l~~~n~~e~~~~  117 (660)
                      .....++...+.++++.+|+.+++...     ..+.++.+||+|+.+++.++|.+|+..|+..||+|+|++.|+++|+++
T Consensus        12 ~~~~~~~~~~~~~~~~~~~~~~a~~~~-----~~~~~~~~ty~e~~~~v~~~a~gL~~lg~~~gdrvai~a~nr~eW~i~   86 (613)
T COG1022          12 VAEIHTLPKRLAERVKDRPDGVALMYK-----ELGGWEAITYRELYERVRALASGLLSLGIPAGDRVAIFAANRPEWAIA   86 (613)
T ss_pred             hhhcccHHHHHHHHhhcCCcceeEeee-----cCCcceEeeHHHHHHHHHHHHHHHHhcCCCCCCEEEEEeCCCHHHHHH
Confidence            344588999999999999998888865     367789999999999999999999999997799999999999999999


Q ss_pred             HHHHHhCCCeEEecCCCCChhHHHHHHhcccceEEEEccchhhhhhccccccccCccEEEEecCCcHHHHHHHhhCCcce
Q 006111          118 MEACNALSLICVPLYDTLGPGAVNFILDHAEIDFVFVQDKKVKELLSPDCRSAQRLRVMVCFTSLTAEQKEMAVQTGIKP  197 (660)
Q Consensus       118 ~lA~~~~G~~~vpl~~~~~~~~l~~~l~~~~~~~ii~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~  197 (660)
                      .+||+.+|++.||+.+..+++++.++|++++++++|++...............+.........+.      .........
T Consensus        87 d~a~~~~g~v~Vp~y~t~~~~~~~~iL~~se~~~i~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~  160 (613)
T COG1022          87 DLAILALGAVSVPIYSTSTPEQLAYILNESESKVIFVENQELLDLVLPVLEDCPKVVDLIVIIDL------VREAVEAKA  160 (613)
T ss_pred             HHHHHHcCCeEEecCCCCCHHHHHHHHhcCCceEEEecchHHHHHHHhhhccccchhhhhhhhhh------hhhccchhh
Confidence            99999999999999999999999999999999999999976554444333322221111111110      000000000


Q ss_pred             eeHHHHHh--------cCccCCccCCCCCCCceEEEEecCCCCCCCceeeecchhHHHHhhhhhhhcccccCC-CCCCcE
Q 006111          198 YSWDEFLH--------LGKVNEMEILPPQPFNICTIMYTSGTSGDPKGVVLTHETIATFVSGVDLFLDQFEDK-MTVDDV  268 (660)
Q Consensus       198 ~~~~~~~~--------~~~~~~~~~~~~~~~~~~~i~~TSGTTG~pK~v~~th~~l~~~~~~~~~~~~~~~~~-~~~~~~  268 (660)
                      ..+..+..        ..........+..++|.|.|+|||||||.||||++||+|+++++..+...+     . ..++|+
T Consensus       161 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dDlatiiYTSGTTG~PKGVmLth~N~~~~v~~~~~~~-----~~~~~~d~  235 (613)
T COG1022         161 LVLEVFPDEGISLFLIDSAGLEGRIAPPKPDDLATIIYTSGTTGTPKGVMLTHRNLLAQVAGIDEVL-----PPIGPGDR  235 (613)
T ss_pred             ccccccccccchhhhhcccccccccCCCCccceEEEEEcCCCCCCCceEEEehHHHHHHHHHHHhhC-----CCCCCCcE
Confidence            11111000        000111222467899999999999999999999999999999999998877     5 889999


Q ss_pred             EEEecChhHHHHHHHH-HHHhhcCcEEEEecCChhhHHHHhhhhcCeEEEechHHHHHHHHHHHHHHHhhchHHHHHHHH
Q 006111          269 YLSFLPLAHILDRVIE-EYFFRRGASVGYYHGDLNALRDDLMELKPTLLAGVPRVFEKIHEGIKKALEELRPLRRRIFDA  347 (660)
Q Consensus       269 ~l~~~pl~~~~g~~~~-l~~l~~G~~~v~~~~~~~~~~~~i~~~~~t~~~~~p~~~~~l~~~~~~~~~~~~~~~~~~~~~  347 (660)
                      +++++|+.|++...+. ...++.|.+ ++...++..++..+++++||+++++|.+|+.+.+.+.++..+.+..++.++.+
T Consensus       236 ~LsfLPlaHi~Er~~~~~~~~~~g~~-~~~~~~~~~~~~dl~~~rPt~m~~VPRvwE~i~~~I~~kv~~~~~~~~~if~~  314 (613)
T COG1022         236 VLSFLPLAHIFERAFEGGLALYGGVT-VLFKEDPRTLLEDLKEVRPTVMIGVPRVWEKVYKGIMEKVAKAPAVRRKLFRW  314 (613)
T ss_pred             EEEeCcHHHHHHHHHHHHHHhhcceE-EEecCCHHHHHHHHHHhCCeEEeechHHHHHHHHHHHHHHHhcchhHHHHHHH
Confidence            9999999999999874 344444444 44444999999999999999999999999999999999999999988889999


Q ss_pred             HHHHHHHHHh---hCCCCCCcchhhhHHHHHHHHHHhCCcEeEEEEccCCCCHHHHHHHHHhcCCceeeecCCCCCCCce
Q 006111          348 LYKYKLAWMN---MGYKQREASPLADLLAFRKVKARLGGRLRLVISGGAPLSTEVEEFLRVTCCAFLVQGYGLTETCGPT  424 (660)
Q Consensus       348 ~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~lr~i~~~G~~l~~~~~~~~~~~~~~~v~~~YG~tE~~~~~  424 (660)
                      ++........   .+..........+++.|+++++.+|.++|++++||+++++++...++.. |+++.++||+||++..+
T Consensus       315 a~~~~~~~~~~~~~~~~~~~~~~~~d~LVf~Kir~~lGgri~~~~sGGa~l~~~~~~f~~~l-Gi~i~eGYGlTEts~~~  393 (613)
T COG1022         315 ALKVAYKKISRALLGGGPLSWLLVADRLVFRKIRDALGGRIRYALSGGAPLSPELLHFFRSL-GIPILEGYGLTETSAVV  393 (613)
T ss_pred             HHHHHHHHHHhhhcccCCcchhhhhhHHHHHHHHHHhCCcEEEEEecCCcCCHHHHHHHHHc-CCCeEEEecccccccce
Confidence            9877643222   1111111222388999999999999999999999999999999999975 89999999999999999


Q ss_pred             ecccCCCccccCccCCCccCeeEEeeecCCCCCCCCCCCCCceEEEccCCcccccCCCchhhhhcc-cCCccccCceEEE
Q 006111          425 TVCFPDEMCMVGTAGPVSVYSELRLEEVPEMGYSPLDDPPCGEVCVRGKTLFSGYYKNPDLTRESI-IDGWFHTGDIGQI  503 (660)
Q Consensus       425 ~~~~~~~~~~~~~~G~~~~~~~v~ivd~~~~~~~~~~~~~~Gei~v~g~~~~~gy~~~~~~~~~~~-~~g~~~TGDl~~~  503 (660)
                      ++++++.... +++|.|+|+++++|+|             .|||+||||.++.|||++|+.|+++| .||||+|||+|.+
T Consensus       394 ~v~~~~~~~~-gtvG~p~p~~evKI~d-------------~GEilVRG~~Vm~GYyk~pe~Taeaf~~DGWf~TGDlg~~  459 (613)
T COG1022         394 SVNPPDRFVL-GTVGKPLPGIEVKIAD-------------DGEILVRGPNVMKGYYKNPEATAEAFTEDGWFRTGDLGEL  459 (613)
T ss_pred             EEccccCccc-CCcCCcCCCceEEEcc-------------CceEEEecchhcchhcCChHHHhhhccccCCcccCceeEE
Confidence            9998877766 9999999999999999             59999999999999999999999999 6999999999999


Q ss_pred             CCCCcEEEEeccCCeeEcCCCeeecchhHHHHHhcCcCcceEEEEecCCCCeEEEEEEcChhhHHHHHHHCCC--CCcHH
Q 006111          504 LPNGVVKIIDRKKNLIKISQGEYVALEYLENVYCVAPIIEDIWVYGDSLKSMLVAVVVPCEEDTKKWAYSNGH--AGSFL  581 (660)
Q Consensus       504 ~~~G~l~~~GR~~d~i~~~~G~~v~~~~iE~~l~~~p~V~~~~V~~~~~~~~~~a~v~~~~~~~~~~~~~~~~--~~~~~  581 (660)
                      |++|+|++.||++|+|+.++|++|.|+.||..+.++|.|.+++|+| .+...++|+|++..+....|+.....  ..+..
T Consensus       460 d~~g~L~i~gRkK~~i~l~~GknIaP~~IE~~l~~~~~I~qi~vvg-~~k~~~~AlIvp~~~~l~~~a~~~~~~~~~~~~  538 (613)
T COG1022         460 DEDGYLVITGRKKELIKLSNGKNIAPEPIESKLAKSPLIEQICVVG-DDKKFLVALIVPDFDALEKWAESLNKVISASRE  538 (613)
T ss_pred             cCCCcEEEeecccceEECCCCcccChHHHHHHHhcCCCeeEEEEEe-cCCcceEEEEeCCHHHHHHHHHhccccccCCHH
Confidence            9999999999999999999999999999999999999999999999 66789999999999999999888764  46788


Q ss_pred             HHhccHHHHHHHHHHHHHHHHhCCCCCceeeeEEEEecCCCCCCCCccccccccchHHHHHHHHHHHHHHHhhhc
Q 006111          582 ELCSLVQLQNYILSELKNAAERNKLRGFEHIKGVILDPRPFDMERDLVTATLKKKRNKLLIYYQVEIDQLYEKLA  656 (660)
Q Consensus       582 ~~~~~~~~~~~~~~~l~~~~~~~~l~~~~~p~~i~~~~~~~~~~~~P~t~~GKv~R~~l~~~~~~~i~~~y~~~~  656 (660)
                      +++.+.++.+.+..++.....  .+..+..+..+.++..+|+.+..-.|++-|++|+.+.+.|.++|+.+|.+..
T Consensus       539 ~l~~~~~l~~~~~~~i~~~~~--~~~~~E~i~~~~~~~~~~t~~~~~~t~t~klkR~~i~~~~~~~i~~~y~~~~  611 (613)
T COG1022         539 ELARDPKLLKLILPRVNKGNK--RLFGFEQIKKFVLLPKEFTPENGELTPTLKLKRHVILDRYKDEIEAVYSRQS  611 (613)
T ss_pred             HHhhCHHHHHHHHHHHHHHhh--cccchhhhheeeecccccccccCccccchhhhHHHHHHhhhhHHHHHhhccc
Confidence            999999999999999988876  4588899999999999999899999999999999999999999999998653

>KOG1176 consensus Acyl-CoA synthetase [Lipid transport and metabolism]

Probab=100.00  E-value=2.8e-75  Score=616.03  Aligned_cols=506  Identities=27%  Similarity=0.352  Sum_probs=411.0

Q ss_pred             cHHHHHHHHHHhCCCCCceeeeccccCCCCCceEEeHHHHHHHHHHHHHHHHHcC--CCCCCEEEEEeCCchhHHHHHHH
Q 006111           43 TAWDIFSMSVQKYPGNRMLGWRPFVDGKFGPYVWKTYKEVYEEVLQIVSALRASG--AEPGCRVGIYGANCPQWVEAMEA  120 (660)
Q Consensus        43 ti~~~l~~~a~~~pd~~a~~~~~~~d~~~~~~~~~Ty~ql~~~v~~lA~~L~~~G--l~~gd~V~l~~~n~~e~~~~~lA  120 (660)
                      .+..+.+.......+.+.+++.   +..   -+.+||.|+++++.++|.+|.+.|  +++||+|++++||+++++++++|
T Consensus        18 ~~~~l~~~~~~~~~~~~~~i~~---~~~---g~~~T~~e~~~~~~r~A~~L~~~~~~i~~gDvV~i~~pNs~~~~~~~la   91 (537)
T KOG1176|consen   18 PITFLGRPAFVYLDRNTSLVYQ---DSD---GRELTYSELHDRCRRLASALSELGLGIKKGDVVGILAPNTPEFVELALA   91 (537)
T ss_pred             ccccccccccccccCcceEEEe---cCC---CcEEcHHHHHHHHHHHHHHHHhcCCCCCCCCEEEEEcCCCHHHHHHHHH
Confidence            3444444333333344777776   321   158999999999999999999875  89999999999999999999999


Q ss_pred             HHhCCCeEEecCCCCChhHHHHHHhcccceEEEEccchhhhhhccccccccCccEEEEecCCcHHHHHHHhhCCcceee-
Q 006111          121 CNALSLICVPLYDTLGPGAVNFILDHAEIDFVFVQDKKVKELLSPDCRSAQRLRVMVCFTSLTAEQKEMAVQTGIKPYS-  199 (660)
Q Consensus       121 ~~~~G~~~vpl~~~~~~~~l~~~l~~~~~~~ii~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~-  199 (660)
                      |+.+|+++.++||.+.+.++..+++.++++++|++......+.+......   ..++++.......   .........+ 
T Consensus        92 ~~~~Ga~~~~~Np~~~~~ei~~~~~~s~~kiif~d~~~~~~i~~~~~~~~---~~i~~l~~~~~~~---~~~~~~~~~~~  165 (537)
T KOG1176|consen   92 VPMAGAVLNPLNPRLTASEIAKQLKDSKPKLIFVDEDFYDKISEATSKLA---LKIIVLTGDEGVI---SISDLVEDLDA  165 (537)
T ss_pred             HHHcCccccccCcccCHHHHHHHHHhcCCeEEEEcCchHHHHHHHHhhcC---CceEEEecccCcc---ccccccccccc
Confidence            99999999999999999999999999999999999998887755443221   3344444320000   0000001111 


Q ss_pred             HHHHHhcCccCCccCCCCCCCceEEEEecCCCCCCCceeeecchhHHHHhhhhhhhcccccCCCCCCcEEEEecChhHHH
Q 006111          200 WDEFLHLGKVNEMEILPPQPFNICTIMYTSGTSGDPKGVVLTHETIATFVSGVDLFLDQFEDKMTVDDVYLSFLPLAHIL  279 (660)
Q Consensus       200 ~~~~~~~~~~~~~~~~~~~~~~~~~i~~TSGTTG~pK~v~~th~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~pl~~~~  279 (660)
                      +..+........  ..+...+|++.++|||||||.||||.+||++++....+.....     .+...++.++.+|++|.+
T Consensus       166 ~~~~~~~~~~~~--~~~~~~dd~~~il~SSGTTg~PKgV~lsHr~~~~~~~~~~~~~-----~~~~~~v~l~~lPl~H~~  238 (537)
T KOG1176|consen  166 FEDLMPEGLPDG--IRPVSEDDTAAILYSSGTTGLPKGVVLSHRNLIANTLSIKIGW-----ELTSDDVYLCTLPLFHIY  238 (537)
T ss_pred             hhhccccCCCcc--cccCCCCCeEEEecCCCCCCCCceEEEecHHHHHHHHHhhhcc-----cCCCCceEEEechHHHHh
Confidence            333333322222  5566779999999999999999999999999998877655544     677799999999999999


Q ss_pred             HHHHHHHH-hhcCcEEEEecC-ChhhHHHHhhhhcCeEEEechHHHHHHHHHHHHHHHhhchHHHHHHHHHHHHHHHHHh
Q 006111          280 DRVIEEYF-FRRGASVGYYHG-DLNALRDDLMELKPTLLAGVPRVFEKIHEGIKKALEELRPLRRRIFDALYKYKLAWMN  357 (660)
Q Consensus       280 g~~~~l~~-l~~G~~~v~~~~-~~~~~~~~i~~~~~t~~~~~p~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  357 (660)
                      |+...+.+ +..|.++++... ++..+++.|++|++|+++++|.++..|++.                            
T Consensus       239 Gl~~~~~~~~~~~~~ii~~~~f~~~~~~~~i~kykvt~~~~vP~~~~~l~~~----------------------------  290 (537)
T KOG1176|consen  239 GLITLLLSLLAGGTTIICLRKFDAELFLDLIEKYKVTHLFLVPPVLNMLAKS----------------------------  290 (537)
T ss_pred             HHHHHHHHHHhCCceEEECCCCCHHHHHHHHHHhCEEEEEcChHHHHHHhcC----------------------------
Confidence            99987775 555666666665 999999999999999999999999998763                            


Q ss_pred             hCCCCCCcchhhhHHHHHHHHHHhCCcEeEEEEccCCCCHHHHHHHHHhcC-CceeeecCCCCCCCceecccCCCccccC
Q 006111          358 MGYKQREASPLADLLAFRKVKARLGGRLRLVISGGAPLSTEVEEFLRVTCC-AFLVQGYGLTETCGPTTVCFPDEMCMVG  436 (660)
Q Consensus       358 ~~~~~~~~~~~~~~~~~~~~~~~~~~~lr~i~~~G~~l~~~~~~~~~~~~~-~~v~~~YG~tE~~~~~~~~~~~~~~~~~  436 (660)
                               +...++++        ++++.+.+||+++++++.+.+.+.++ ..+.++||+||+++.++.+.......++
T Consensus       291 ---------p~~~~~~l--------~sl~~v~~gga~~~~~~~~~~~~~l~~~~v~q~YGmTE~~~~~~~~~~~~e~k~~  353 (537)
T KOG1176|consen  291 ---------PIVKKYDL--------SSLRSVLSGGAPLSPATLEKVKERLPNVTVIQGYGMTEAGGLITSNDWGPERKPG  353 (537)
T ss_pred             ---------CccCcccC--------CccEEEEecCCCCCHHHHHHHHHhCCCceEEEeeccccccCceeecCCCccCccc
Confidence                     22333334        49999999999999999999999998 8999999999999888888766656679


Q ss_pred             ccCCCccCeeEEeeecCCCCCCCCCCCCCceEEEccCCcccccCCCchhhhhcccC-CccccCceEEECCCCcEEEEecc
Q 006111          437 TAGPVSVYSELRLEEVPEMGYSPLDDPPCGEVCVRGKTLFSGYYKNPDLTRESIID-GWFHTGDIGQILPNGVVKIIDRK  515 (660)
Q Consensus       437 ~~G~~~~~~~v~ivd~~~~~~~~~~~~~~Gei~v~g~~~~~gy~~~~~~~~~~~~~-g~~~TGDl~~~~~~G~l~~~GR~  515 (660)
                      ++|.++++..+++.+ +.|.  .++.++.||||++|+.++.||++||+.|++.|.+ |||+|||+|++|+||+||+++|+
T Consensus       354 svG~~~~g~~~~v~~-e~g~--~l~~~~~GEI~vrg~~imkGY~~NpeaT~~~~~~~GW~~TGDiGy~D~DG~l~IvdR~  430 (537)
T KOG1176|consen  354 SVGRLLPGVRVKVLD-ETGV--SLGPNQTGEICVRGPQVMKGYLKNPEATKEAFDDDGWFHTGDLGYFDEDGYLYIVDRS  430 (537)
T ss_pred             ccCccccceEEEeeC-CCCC--CCCCCCceEEEEECcccchhhcCChHHHHhhcccCCccccCceEEEcCCCeEEEecch
Confidence            999999988888887 5555  4455578999999999999999999999999955 99999999999999999999999


Q ss_pred             CCeeEcCCCeeecchhHHHHHhcCcCcceEEEEecCCC---CeEEEEEEcChhhHHHHHHHCCCCCcHHHHhccHHHHHH
Q 006111          516 KNLIKISQGEYVALEYLENVYCVAPIIEDIWVYGDSLK---SMLVAVVVPCEEDTKKWAYSNGHAGSFLELCSLVQLQNY  592 (660)
Q Consensus       516 ~d~i~~~~G~~v~~~~iE~~l~~~p~V~~~~V~~~~~~---~~~~a~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  592 (660)
                      +|+||. +|++|+|.|||++|.+||.|.||+|+|.+|+   +.++|+|+++++.        .+                
T Consensus       431 KdlIk~-~G~qv~P~EiE~vL~~hP~V~eaaVvgipDe~~Ge~p~A~VV~k~g~--------~l----------------  485 (537)
T KOG1176|consen  431 KDLIKY-GGEQVSPAEIEAVLLTHPDVLEAAVVGIPDEVWGETPAAFVVLKKGS--------TL----------------  485 (537)
T ss_pred             hhheee-CCEEeCHHHHHHHHHhCCCccEEEEEcccccccCCcceEEEEecCCC--------cC----------------
Confidence            999997 8999999999999999999999999999876   5999999999854        11                


Q ss_pred             HHHHHHHHHHhCCCCCceeeeEEEEecCCCCCCCCccccccccchHHHHHHHHHH
Q 006111          593 ILSELKNAAERNKLRGFEHIKGVILDPRPFDMERDLVTATLKKKRNKLLIYYQVE  647 (660)
Q Consensus       593 ~~~~l~~~~~~~~l~~~~~p~~i~~~~~~~~~~~~P~t~~GKv~R~~l~~~~~~~  647 (660)
                      -.++|.++++ ++|++|++|+.++|+++      +|+|++||++|+.|+++|.+.
T Consensus       486 te~di~~~v~-k~l~~y~~~~~V~Fvd~------lPKs~~GKi~R~~lr~~~~~~  533 (537)
T KOG1176|consen  486 TEKDIIEYVR-KKLPAYKLPGGVVFVDE------LPKTPNGKILRRKLRDIAKKL  533 (537)
T ss_pred             CHHHHHHHHH-hhCChhhccCeEEEecc------CCCCCcchHHHHHHHHHHHhc
Confidence            1345566665 78999999999999854      589999999999999998763

>KOG1177 consensus Long chain fatty acid acyl-CoA ligase [Lipid transport and metabolism]

Probab=100.00  E-value=1.1e-74  Score=567.19  Aligned_cols=519  Identities=23%  Similarity=0.297  Sum_probs=440.6

Q ss_pred             CCCCCCCCCCCCcHHHHHHHHHHhCCCCCceeeeccccCCCCCceEEeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEeCC
Q 006111           31 SNGFPSVDSDLNTAWDIFSMSVQKYPGNRMLGWRPFVDGKFGPYVWKTYKEVYEEVLQIVSALRASGAEPGCRVGIYGAN  110 (660)
Q Consensus        31 ~~~~~~~~~~~~ti~~~l~~~a~~~pd~~a~~~~~~~d~~~~~~~~~Ty~ql~~~v~~lA~~L~~~Gl~~gd~V~l~~~n  110 (660)
                      -+|....|-...|+.++++-.+++-||+.|+++..  .+     .++||+|+.+.++++|++|...|+++||||++..||
T Consensus        39 ~~g~~~ipl~~~Tigq~l~~~t~~v~dkea~Vf~~--eg-----~R~Tf~~~~~ev~slAaGll~lGL~kGDrVgvwgpN  111 (596)
T KOG1177|consen   39 VHGCSQIPLDSETIGQLLETTTERVPDKEAAVFDH--EG-----IRLTFSEFVSEVESLAAGLLSLGLKKGDRVGVWGPN  111 (596)
T ss_pred             cCCCCCCCcccccHHHHHHHHhhccCcceEEEEee--cc-----chhhHHHHHHHHHHHHhhHHhhcCCCCCEEEEecCC
Confidence            34555678889999999999999999999999871  22     469999999999999999999999999999999999


Q ss_pred             chhHHHHHHHHHhCCCeEEecCCCCChhHHHHHHhcccceEEEEccchhh-----hhhcc------------ccccccCc
Q 006111          111 CPQWVEAMEACNALSLICVPLYDTLGPGAVNFILDHAEIDFVFVQDKKVK-----ELLSP------------DCRSAQRL  173 (660)
Q Consensus       111 ~~e~~~~~lA~~~~G~~~vpl~~~~~~~~l~~~l~~~~~~~ii~~~~~~~-----~~~~~------------~~~~~~~~  173 (660)
                      +.+|+.++|||.++|.+.+++||.+...+++..|++.+++++|+...+-.     .+++.            -.+.++.+
T Consensus       112 ~~~w~l~~lA~A~AG~v~v~~NP~Yq~~elr~~L~k~~~k~l~~p~~~k~~ny~~~l~~icPEv~~~~~G~lkS~~lp~l  191 (596)
T KOG1177|consen  112 SYEWVLCQLACARAGLVLVNLNPAYQSEELRYVLKKVGCKALFAPPQFKTQNYYETLLEICPEVMRGDPGQLKSELLPEL  191 (596)
T ss_pred             hHHHHHHHHHHHHhceEEeccCcccccHHHHHHHhhcCeEEEEccchhhhchHHHHHHHhhHHhhcCCCccccccccccc
Confidence            99999999999999999999999999999999999999999999774321     11111            11244667


Q ss_pred             cEEEEecCCcHHHHHHHhhCCcceeeHHHHHhcCccCCc-----cCCCCCCCceEEEEecCCCCCCCceeeecchhHHHH
Q 006111          174 RVMVCFTSLTAEQKEMAVQTGIKPYSWDEFLHLGKVNEM-----EILPPQPFNICTIMYTSGTSGDPKGVVLTHETIATF  248 (660)
Q Consensus       174 ~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~i~~TSGTTG~pK~v~~th~~l~~~  248 (660)
                      .+++..++..+         -.+...+++++.....+..     ......|||++.|.|||||||.||++.+||.+++++
T Consensus       192 thvi~~~ed~~---------~~Ga~~~sev~~~~s~~~~a~l~~~~k~~~pdd~~niQFTSGTTG~PKgatLsH~~~~Nn  262 (596)
T KOG1177|consen  192 THVILADEDHP---------LPGAFLLSEVLKAASKEERAKLADMSKWLSPDDAVNIQFTSGTTGAPKGATLSHYNFLNN  262 (596)
T ss_pred             eEEEecCCCCc---------CCCceehHHHHHhcchHHHHHHHhhhhhcCCCCceEEEeccCCCCCCcceeeehhhhhhh
Confidence            77777763221         2235567777766644221     123457899999999999999999999999999999


Q ss_pred             hhhhhhhcccccCCCCCCcEEEEecChhHHHHHHH-HHHHhhcCcEEEEecC--ChhhHHHHhhhhcCeEEEechHHHHH
Q 006111          249 VSGVDLFLDQFEDKMTVDDVYLSFLPLAHILDRVI-EEYFFRRGASVGYYHG--DLNALRDDLMELKPTLLAGVPRVFEK  325 (660)
Q Consensus       249 ~~~~~~~~~~~~~~~~~~~~~l~~~pl~~~~g~~~-~l~~l~~G~~~v~~~~--~~~~~~~~i~~~~~t~~~~~p~~~~~  325 (660)
                      .......+     ++...+++.+..|++|.+|... ++.++..|++++++..  ++.+.+++|.++++|.++++|+++..
T Consensus       263 a~~vg~r~-----g~~e~~~i~~~~Pl~H~~G~~~~~ma~l~~gat~Vfp~~~f~~k~alqai~~ekcT~l~gtPtM~~D  337 (596)
T KOG1177|consen  263 ARAVGARA-----GYNEKHRICIPNPLYHCFGCVLGVMAALMHGATIVFPAPSFDPKDALQAISNEKCTTLYGTPTMFVD  337 (596)
T ss_pred             HHHHHHHh-----CcCcceEEEecCchHHHHHHHHHHHHHHHhCcEEEeeCCCCChHHHHHHHHhhceEEEecChHHHHH
Confidence            99988887     8888999999999999999765 7888999999999765  99999999999999999999999999


Q ss_pred             HHHHHHHHHHhhchHHHHHHHHHHHHHHHHHhhCCCCCCcchhhhHHHHHHHHHHhCCcEeEEEEccCCCCHHHHHHHHH
Q 006111          326 IHEGIKKALEELRPLRRRIFDALYKYKLAWMNMGYKQREASPLADLLAFRKVKARLGGRLRLVISGGAPLSTEVEEFLRV  405 (660)
Q Consensus       326 l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lr~i~~~G~~l~~~~~~~~~~  405 (660)
                      |++.                                     +....+++        +++|.++.||+++++++++.+..
T Consensus       338 lln~-------------------------------------~~~~~~~~--------s~lr~~vigGa~~s~eLlk~iv~  372 (596)
T KOG1177|consen  338 LLNI-------------------------------------PQKQQVDL--------SSLRKGVIGGAPVSPELLKLIVN  372 (596)
T ss_pred             Hhcc-------------------------------------hhhccCch--------hhhhhheeCCCCCCHHHHHHHHH
Confidence            8753                                     22233334        38999999999999999999988


Q ss_pred             hcCC-ceeeecCCCCCCCceecccCCC--ccccCccCCCccCeeEEeeecCCCCCCCCCCCCCceEEEccCCcccccCCC
Q 006111          406 TCCA-FLVQGYGLTETCGPTTVCFPDE--MCMVGTAGPVSVYSELRLEEVPEMGYSPLDDPPCGEVCVRGKTLFSGYYKN  482 (660)
Q Consensus       406 ~~~~-~v~~~YG~tE~~~~~~~~~~~~--~~~~~~~G~~~~~~~v~ivd~~~~~~~~~~~~~~Gei~v~g~~~~~gy~~~  482 (660)
                      ..+. .+...||+||++...+....++  .....++|..+++.+..++| .++...+.+  ..||||+||++.+.|||++
T Consensus       373 ~~~m~~i~v~YG~TEts~v~~~~~~~D~~~~~~ksVG~~m~h~Ea~iv~-~~g~~v~~~--~~Gel~iRGY~tMl~Ywg~  449 (596)
T KOG1177|consen  373 QMNMKDIAVAYGLTETSPVLFMSLLGDPPEERIKSVGHLMDHYEAAIVD-KDGSEVPLG--TKGELLIRGYSTMLGYWGE  449 (596)
T ss_pred             hhCceeeEEEeeccccCcceeeecCCCCHHHHHhhhhhccccccccccc-CCCCccccC--CCceEEEEechhheeecCC
Confidence            7764 4778999999998887776655  33447999999999999999 777766665  5799999999999999999


Q ss_pred             chhhhhcc-cCCccccCceEEECCCCcEEEEeccCCeeEcCCCeeecchhHHHHHhcCcCcceEEEEecCCC---CeEEE
Q 006111          483 PDLTRESI-IDGWFHTGDIGQILPNGVVKIIDRKKNLIKISQGEYVALEYLENVYCVAPIIEDIWVYGDSLK---SMLVA  558 (660)
Q Consensus       483 ~~~~~~~~-~~g~~~TGDl~~~~~~G~l~~~GR~~d~i~~~~G~~v~~~~iE~~l~~~p~V~~~~V~~~~~~---~~~~a  558 (660)
                      ++.+.+.. .|.||+|||+|.+|++|.++++||.+|+|+ ++|++|+|.|||+.|.+||.|.++.|+|++|+   +.++|
T Consensus       450 ~~kT~eti~~drW~~TGDi~~m~enG~i~iVGRskdmI~-rGGENVyP~ElE~fL~~hp~V~~a~VVGV~D~R~GE~VCA  528 (596)
T KOG1177|consen  450 EEKTKETIGNDRWYDTGDIAVMDENGTIEIVGRSKDMII-RGGENVYPTELEDFLNKHPLVKEAHVVGVPDERLGEEVCA  528 (596)
T ss_pred             cccchhhcccccceecCceEEEcCCCcEEEEEcccCeEE-eCCcccChHHHHHHHhhCCCeeeEEEEccCCCcccceEEE
Confidence            99998887 899999999999999999999999999998 69999999999999999999999999999876   48999


Q ss_pred             EEEcChhhHHHHHHHCCCCCcHHHHhccHHHHHHHHHHHHHHHHhCCCCCceeeeEEEEecCCCCCCCCccccccccchH
Q 006111          559 VVVPCEEDTKKWAYSNGHAGSFLELCSLVQLQNYILSELKNAAERNKLRGFEHIKGVILDPRPFDMERDLVTATLKKKRN  638 (660)
Q Consensus       559 ~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~l~~~~~p~~i~~~~~~~~~~~~P~t~~GKv~R~  638 (660)
                      +|-+..+...                      ....++|+.+|+ .++.+|++|++|+++++      ||+|.+|||+|-
T Consensus       529 ~vRLqe~~e~----------------------~~t~E~lKa~Ck-~klaHFKiPky~vf~~~------FPlT~tGKIqKF  579 (596)
T KOG1177|consen  529 CVRLQEGAEG----------------------KTTAETLKAMCK-GKLAHFKIPKYFVFVDE------FPLTTTGKIQKF  579 (596)
T ss_pred             EEEeeccccc----------------------cccHHHHHHHHh-cccccccCCcEEEEecc------CcccccccchhH
Confidence            9999886410                      134577888887 77999999999999855      589999999999


Q ss_pred             HHHHHHHHHH
Q 006111          639 KLLIYYQVEI  648 (660)
Q Consensus       639 ~l~~~~~~~i  648 (660)
                      +++++++.++
T Consensus       580 eir~~~k~~l  589 (596)
T KOG1177|consen  580 EIREMSKGHL  589 (596)
T ss_pred             HHHHHHHhhc
Confidence            9999998655

>COG0365 Acs Acyl-coenzyme A synthetases/AMP-(fatty) acid ligases [Lipid metabolism]

Probab=100.00  E-value=2.8e-72  Score=589.73  Aligned_cols=500  Identities=21%  Similarity=0.229  Sum_probs=411.3

Q ss_pred             CCcHHHHHHHHHHh-CCCCCceeeeccccCCCCCceEEeHHHHHHHHHHHHHHHHH-cCCCCCCEEEEEeCCchhHHHHH
Q 006111           41 LNTAWDIFSMSVQK-YPGNRMLGWRPFVDGKFGPYVWKTYKEVYEEVLQIVSALRA-SGAEPGCRVGIYGANCPQWVEAM  118 (660)
Q Consensus        41 ~~ti~~~l~~~a~~-~pd~~a~~~~~~~d~~~~~~~~~Ty~ql~~~v~~lA~~L~~-~Gl~~gd~V~l~~~n~~e~~~~~  118 (660)
                      .|--.++++++.+. .+|++|+++.   +..++. +++||+||++.++++|+.|++ .|+ +||||++++|+.+|.++++
T Consensus         8 lN~~~n~~dr~~~~~~~~~~aii~~---~e~~~~-~~~Ty~~L~~~v~r~A~~L~~~~gv-kGDrV~iymp~~pe~~~a~   82 (528)
T COG0365           8 LNLALNALDRHLEADRPDDTAIIFD---GEDGLF-RELTYGDLRREVARLANALKDLGGV-KGDRVAIYMPNSPEAVIAL   82 (528)
T ss_pred             eechhhhhhhhhhccCCCceEEEEE---cCCCCc-eEEEHHHHHHHHHHHHHHHHHhCCC-CCCEEEEEcCCCHHHHHHH
Confidence            44445567777763 5789999998   544444 899999999999999999987 578 9999999999999999999


Q ss_pred             HHHHhCCCeEEecCCCCChhHHHHHHhcccceEEEEccchhhhhhcccccccc--CccEEEEecCCcHHHHHHHhhCCcc
Q 006111          119 EACNALSLICVPLYDTLGPGAVNFILDHAEIDFVFVQDKKVKELLSPDCRSAQ--RLRVMVCFTSLTAEQKEMAVQTGIK  196 (660)
Q Consensus       119 lA~~~~G~~~vpl~~~~~~~~l~~~l~~~~~~~ii~~~~~~~~~~~~~~~~~~--~~~~i~~~~~~~~~~~~~~~~~~~~  196 (660)
                      |||+++|++.+|+.+.++++.+...+++++++++|+++...............  .+..+++.....             
T Consensus        83 LA~~riGAI~~~vf~~f~~~al~~Ri~d~~~k~vit~d~~~~~gk~~~~~~~~~~~~~~~iv~~r~~-------------  149 (528)
T COG0365          83 LATARIGAIPAVVSPGLSAEAVADRIADLGPKVLIADDGTFRNGKEIALLEDADAVLSSVVVVPRLG-------------  149 (528)
T ss_pred             HHHHHcCCEEeecccCCCHHHHHHHHHccCCCEEEEecccccccccccchhHHHHhhcceEEecccc-------------
Confidence            99999999999999999999999999999999999988766544321111000  000022322211             


Q ss_pred             eeeHHHHHhcCccCCccCCCCCCCceEEEEecCCCCCCCceeeecchhHHHHhhhhhh-hcccccCCCCCCcEEEEecCh
Q 006111          197 PYSWDEFLHLGKVNEMEILPPQPFNICTIMYTSGTSGDPKGVVLTHETIATFVSGVDL-FLDQFEDKMTVDDVYLSFLPL  275 (660)
Q Consensus       197 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~TSGTTG~pK~v~~th~~l~~~~~~~~~-~~~~~~~~~~~~~~~l~~~pl  275 (660)
                       .+|.++.... .......+..++|+++++|||||||+||+|+++|..++..+..... .+     .+.++|++++..++
T Consensus       150 -~~~~~~~~~~-~~~~~~~~~~~~dpl~ilYTSGTTG~PKgv~H~~gg~l~~~~~~~~~~~-----~~~~~Dv~w~~ad~  222 (528)
T COG0365         150 -LWYDEAVEKA-SEKFEFEPLPADDPLFLLYTSGTTGKPKGIVHSHGGYLVEHRLTAKFHG-----DLLPGDRFWNSSDP  222 (528)
T ss_pred             -ccHHHHhhcc-CCCCCccccCCCCeEEEEeCCCCCCCCceEEEeCchHHHHHHHHHHHhh-----CCCCCCEEEeCCCc
Confidence             4667666554 2333344588999999999999999999999999988777765443 44     67799999999999


Q ss_pred             hHHHHHHH-HHHHhhcCcEEEEecC----ChhhHHHHhhhhcCeEEEechHHHHHHHHHHHHHHHhhchHHHHHHHHHHH
Q 006111          276 AHILDRVI-EEYFFRRGASVGYYHG----DLNALRDDLMELKPTLLAGVPRVFEKIHEGIKKALEELRPLRRRIFDALYK  350 (660)
Q Consensus       276 ~~~~g~~~-~l~~l~~G~~~v~~~~----~~~~~~~~i~~~~~t~~~~~p~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~  350 (660)
                      .|.+|... ++.++..|++++++.+    ++..+++.|+++++|.+++.|+.++.|.+...                   
T Consensus       223 GW~~g~~~~v~~pL~~Gat~~~~eg~p~~~~~~~~~~ie~~~vt~~~tsPT~~R~l~~~g~-------------------  283 (528)
T COG0365         223 GWIYGLWYSVFSPLASGATTVLYDGRPFYSPERLWEALEKYKVTIFGTSPTFLRRLMKLGL-------------------  283 (528)
T ss_pred             hhhhCchHHHHHHHhcCCeEEEeCCCCCCCHHHHHHHHHHhCCceEeeCHHHHHHHHhcCC-------------------
Confidence            99999987 7888999999999976    38899999999999999999999999875311                   


Q ss_pred             HHHHHHhhCCCCCCcchhhhHHHHHHHHHHhCCcEeEEEEccCCCCHHHHHHHHHhcCCceeeecCCCCCCCceecccCC
Q 006111          351 YKLAWMNMGYKQREASPLADLLAFRKVKARLGGRLRLVISGGAPLSTEVEEFLRVTCCAFLVQGYGLTETCGPTTVCFPD  430 (660)
Q Consensus       351 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lr~i~~~G~~l~~~~~~~~~~~~~~~v~~~YG~tE~~~~~~~~~~~  430 (660)
                                        .+++++        ++||.+.+.||+|+++.++++.+.+|++|.+.||+||+++....... 
T Consensus       284 ------------------~~~~dl--------ssLr~~~SaGEPLnpe~~~w~~~~~g~~i~d~~gqTEtg~~~~~~~~-  336 (528)
T COG0365         284 ------------------GEPYDL--------SSLRVLGSAGEPLNPEAFEWFYSALGVWILDIYGQTETGMGFIAGRP-  336 (528)
T ss_pred             ------------------cccccc--------hhheeeeccCCCCCHHHHHHHHHHhCCCEeccccccccCccccCCCC-
Confidence                              223334        49999999999999999999999999999999999999966555544 


Q ss_pred             CccccCccCCCccCeeEEeeecCCCCCCCCCCCCCceEEEccC--CcccccCCCchhhhhcccCCccccCceEEECCCCc
Q 006111          431 EMCMVGTAGPVSVYSELRLEEVPEMGYSPLDDPPCGEVCVRGK--TLFSGYYKNPDLTRESIIDGWFHTGDIGQILPNGV  508 (660)
Q Consensus       431 ~~~~~~~~G~~~~~~~v~ivd~~~~~~~~~~~~~~Gei~v~g~--~~~~gy~~~~~~~~~~~~~g~~~TGDl~~~~~~G~  508 (660)
                       ...+++.|.|+||+++.++| ++++  +++.++ |+|+++.|  +++.+||+|++...+.|-++||.|||.+++|+||+
T Consensus       337 -~~~~g~~g~p~pG~~~~vvd-d~g~--~~~~~~-G~Lvi~~~~p~~~~~~w~d~er~~~~y~~~~y~tGD~~~~DedGy  411 (528)
T COG0365         337 -PVKNGSSGLPLPGYAVRRVD-DEGN--PVPPGV-GELVVRLPWPGMALTYWNDPERYKEAYFGRWYRTGDWAERDEDGY  411 (528)
T ss_pred             -CcCCCCCCCCCCCceeEEEC-CCCC--cCCCCc-eEEEEeCCCchhhhhhhCCHHHHHHHHhhceeecCceeEEccCCC
Confidence             33336669999999999999 7755  344446 99999986  89999999999999988666999999999999999


Q ss_pred             EEEEeccCCeeEcCCCeeecchhHHHHHhcCcCcceEEEEecCCC---CeEEEEEEcChhhHHHHHHHCCCCCcHHHHhc
Q 006111          509 VKIIDRKKNLIKISQGEYVALEYLENVYCVAPIIEDIWVYGDSLK---SMLVAVVVPCEEDTKKWAYSNGHAGSFLELCS  585 (660)
Q Consensus       509 l~~~GR~~d~i~~~~G~~v~~~~iE~~l~~~p~V~~~~V~~~~~~---~~~~a~v~~~~~~~~~~~~~~~~~~~~~~~~~  585 (660)
                      +++.||.||+|++ .|+++.+.|||++|.+||.|.||+|+|.+++   +.+.|||+++++..                  
T Consensus       412 ~~i~GR~DDvI~v-sG~Rig~~EvE~~l~~hP~VaEaAvVg~pd~~kg~~v~afVvL~~g~~------------------  472 (528)
T COG0365         412 FWLHGRSDDVIKV-SGKRIGPLEIESVLLAHPAVAEAAVVGVPDPGKGQIVLAFVVLAAGVE------------------  472 (528)
T ss_pred             EEEEeeccceEec-cCeeccHHHHHHHHHhCcceeeeEEEeccCCCCCcEEEEEEEecCCCC------------------
Confidence            9999999999997 7999999999999999999999999999875   47999999999751                  


Q ss_pred             cHHHHHHHHHHHHHHHHhCCCCCceeeeEEEEecCCCCCCCCccccccccchHHHHHHHHH
Q 006111          586 LVQLQNYILSELKNAAERNKLRGFEHIKGVILDPRPFDMERDLVTATLKKKRNKLLIYYQV  646 (660)
Q Consensus       586 ~~~~~~~~~~~l~~~~~~~~l~~~~~p~~i~~~~~~~~~~~~P~t~~GKv~R~~l~~~~~~  646 (660)
                      ..    .+.++|+++.++... ++..|+.|.|+++      +|+|.||||.|+.||+.+.+
T Consensus       473 ~~----~L~~ei~~~vr~~~~-~~~~p~~i~fv~~------LPkT~sGKI~R~~lr~~~~~  522 (528)
T COG0365         473 PN----ELAEEIRRHVARNIG-PHAIPRKIRFVDE------LPKTASGKIQRRLLRKILHK  522 (528)
T ss_pred             hH----HHHHHHHHHHHhccC-cccCCceEEEecC------CCCCCcccHHHHHHHHHHhh
Confidence            11    666777777764444 4999999999854      48999999999999988874

>COG0318 CaiC Acyl-CoA synthetases (AMP-forming)/AMP-acid ligases II [Lipid metabolism / Secondary metabolites biosynthesis, transport, and catabolism]

Probab=100.00  E-value=2.9e-71  Score=607.55  Aligned_cols=508  Identities=28%  Similarity=0.395  Sum_probs=417.7

Q ss_pred             CCCCCcHHHHHHHHHHhCCCCCceeeeccccCCCCCceEEeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEeCCchhHHHH
Q 006111           38 DSDLNTAWDIFSMSVQKYPGNRMLGWRPFVDGKFGPYVWKTYKEVYEEVLQIVSALRASGAEPGCRVGIYGANCPQWVEA  117 (660)
Q Consensus        38 ~~~~~ti~~~l~~~a~~~pd~~a~~~~~~~d~~~~~~~~~Ty~ql~~~v~~lA~~L~~~Gl~~gd~V~l~~~n~~e~~~~  117 (660)
                      ...+.++.+.|.+++.++|+++|+.+.   +...    ++||+||.++++++|..|++.|+++||+|+|+++|+++++++
T Consensus         7 ~~~~~~~~~~l~~~a~~~~~~~a~~~~---~~~~----~~Ty~el~~~~~~~A~~L~~~~v~~gdrVail~~N~~e~~~~   79 (534)
T COG0318           7 MTAELTLASLLERAARRNPDRPALIFL---GRGG----RLTYRELDRRANRLAAALQALGVKPGDRVAILLPNSPEFLIA   79 (534)
T ss_pred             ccccccHHHHHHHHHHhCCCceEEEEc---CCCc----eeeHHHHHHHHHHHHHHHHHcCCCCCCEEEEECCCCHHHHHH
Confidence            445689999999999999999999987   4321    599999999999999999999999999999999999999999


Q ss_pred             HHHHHhCCCeEEecCCCCChhHHHHHHhcccceEEEEccchhhhhhccccccccCccEEEEecCCcHHHHHHHhhCCcce
Q 006111          118 MEACNALSLICVPLYDTLGPGAVNFILDHAEIDFVFVQDKKVKELLSPDCRSAQRLRVMVCFTSLTAEQKEMAVQTGIKP  197 (660)
Q Consensus       118 ~lA~~~~G~~~vpl~~~~~~~~l~~~l~~~~~~~ii~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~  197 (660)
                      +|||+++|++++|+||.+...++.++++.+++++++++......... ..........+........           ..
T Consensus        80 ~~a~~~~Gav~vpln~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~-----------~~  147 (534)
T COG0318          80 FLAALRAGAVAVPLNPRLTPRELAYILNDAGAKVLITSAEFAALLEA-VAEALPVVLVVLLVGDADD-----------RL  147 (534)
T ss_pred             HHHHHhcCEEEeecCcccCHHHHHHHHHhcCCeEEEEcccchhHHHH-HhccCCcceEEEecccccc-----------cc
Confidence            99999999999999999999999999999999999999873332222 2111122222222221110           00


Q ss_pred             -eeHHHHHhcCccCCccCCCCCCCceEEEEecCCCCCCCceeeecchhHHHHhhhhhhhcccccCC--CCCCcEEEEecC
Q 006111          198 -YSWDEFLHLGKVNEMEILPPQPFNICTIMYTSGTSGDPKGVVLTHETIATFVSGVDLFLDQFEDK--MTVDDVYLSFLP  274 (660)
Q Consensus       198 -~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~TSGTTG~pK~v~~th~~l~~~~~~~~~~~~~~~~~--~~~~~~~l~~~p  274 (660)
                       .++..................++++++++|||||||.||+|++||++++.+...+...+     .  ++..|++++++|
T Consensus       148 ~~~~~~~~~~~~~~~~~~~~~~~~d~a~i~yTSGTTG~PKgv~~th~~~~~~~~~~~~~~-----~~~~~~~d~~l~~lP  222 (534)
T COG0318         148 PITLEALAAEGPGPDADARPVDPDDLAFLLYTSGTTGLPKGVVLTHRNLLANAAGIAAAL-----GGGLTPDDVVLSWLP  222 (534)
T ss_pred             cccHHHHhhccCCcccccCCCCCCCEEEEEeCCCCCCCCCEeEEecHhHHHHHHHHHHHh-----cccCCCCceEEEecC
Confidence             13444433222222222336799999999999999999999999999999988887777     6  889999999999


Q ss_pred             hhHHHHHHHHHHH-hhcCcEEEEec---CChhhHHHHhhhhcCeEEEechHHHHHHHHHHHHHHHhhchHHHHHHHHHHH
Q 006111          275 LAHILDRVIEEYF-FRRGASVGYYH---GDLNALRDDLMELKPTLLAGVPRVFEKIHEGIKKALEELRPLRRRIFDALYK  350 (660)
Q Consensus       275 l~~~~g~~~~l~~-l~~G~~~v~~~---~~~~~~~~~i~~~~~t~~~~~p~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~  350 (660)
                      ++|.+|+...+.+ ++.|+++++.+   +++..++..+.++++|+++++|+++..++.......                
T Consensus       223 l~H~~Gl~~~~~~~~~~G~~~v~~~~~~f~~~~~~~~i~~~~~t~~~~vPt~~~~ll~~~~~~~----------------  286 (534)
T COG0318         223 LFHIFGLIVGLLAPLLGGGTLVLLSPEPFDPEEVLWLIEKYKVTVLSGVPTFLRELLDNPEKDD----------------  286 (534)
T ss_pred             hHHHHHHHHHHHHHHHcCCEEEeCCCCCcCHHHHHHHHHHhcceEEecchHHHHHHHhCCccCc----------------
Confidence            9999999986555 99999999987   389999999999999999999999999876432211                


Q ss_pred             HHHHHHhhCCCCCCcchhhhHHHHHHHHHHhCCcEeEEEEccCCCCHHHHHHHHHhcC-CceeeecCCCCCCCceecccC
Q 006111          351 YKLAWMNMGYKQREASPLADLLAFRKVKARLGGRLRLVISGGAPLSTEVEEFLRVTCC-AFLVQGYGLTETCGPTTVCFP  429 (660)
Q Consensus       351 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lr~i~~~G~~l~~~~~~~~~~~~~-~~v~~~YG~tE~~~~~~~~~~  429 (660)
                                           .+++       +++|.+++||+++++++.+.+.+.++ ..+++.||+||++..++....
T Consensus       287 ---------------------~~~~-------~~lr~~~~gg~~~~~~~~~~~~~~~~~~~i~~~YG~TE~~~~~~~~~~  338 (534)
T COG0318         287 ---------------------DDLS-------SSLRLVLSGGAPLPPELLERFEERFGPIAILEGYGLTETSPVVTINPP  338 (534)
T ss_pred             ---------------------cccc-------cceEEEEecCCcCCHHHHHHHHHHhCCCceEEeecccccCceeecCCC
Confidence                                 1111       13999999999999999999999997 579999999999988887777


Q ss_pred             CC-ccccCccCCCccCeeEEeeecCCCCCCCCCCCCCceEEEccCCcccccCCCchhhhhcccC-CccccCceEEECCCC
Q 006111          430 DE-MCMVGTAGPVSVYSELRLEEVPEMGYSPLDDPPCGEVCVRGKTLFSGYYKNPDLTRESIID-GWFHTGDIGQILPNG  507 (660)
Q Consensus       430 ~~-~~~~~~~G~~~~~~~v~ivd~~~~~~~~~~~~~~Gei~v~g~~~~~gy~~~~~~~~~~~~~-g~~~TGDl~~~~~~G  507 (660)
                      .. ....+++|.|+|+++++|+| ++++ .+.+ |+.|||||+||+++.||+++++.+.+.|.+ |||+|||+|++|++|
T Consensus       339 ~~~~~~~~~~G~~~pg~~v~Ivd-~~~~-~~~p-g~vGei~irgp~v~~GY~~~pe~t~~~f~~~gW~~TGDlg~~d~~G  415 (534)
T COG0318         339 DDLLAKPGSVGRPLPGVEVRIVD-PDGG-EVLP-GEVGEIWVRGPNVMKGYWNRPEATAEAFDEDGWLRTGDLGYVDEDG  415 (534)
T ss_pred             chhhhcCCcccccCCCcEEEEEe-CCCC-ccCC-CCceEEEEECchhhhhhcCChHHHHHhhccCCeeeecceEEEcCCc
Confidence            66 33557889999999999999 6665 2332 679999999999999999999999998865 999999999999999


Q ss_pred             cEEEEeccCCeeEcCCCeeecchhHHHHHhcCcCcceEEEEecCCC---CeEEEEEEcChhhHHHHHHHCCCCCcHHHHh
Q 006111          508 VVKIIDRKKNLIKISQGEYVALEYLENVYCVAPIIEDIWVYGDSLK---SMLVAVVVPCEEDTKKWAYSNGHAGSFLELC  584 (660)
Q Consensus       508 ~l~~~GR~~d~i~~~~G~~v~~~~iE~~l~~~p~V~~~~V~~~~~~---~~~~a~v~~~~~~~~~~~~~~~~~~~~~~~~  584 (660)
                      ++++.||.+|+|+. +|++|+|.+||+++.+||.|.+|+|+|.+++   +.++|+|+++++..                 
T Consensus       416 ~l~i~gR~kd~I~~-gG~ni~p~eiE~~l~~~~~V~~aavvgvpd~~~Ge~~~a~v~~~~~~~-----------------  477 (534)
T COG0318         416 YLYIVGRLKDLIIS-GGENIYPEEIEAVLAEHPAVAEAAVVGVPDERWGERVVAVVVLKPGGD-----------------  477 (534)
T ss_pred             cEEEEeccceEEEe-CCeEECHHHHHHHHHhCCCcceEEEEeCCCCccCceEEEEEEEcCCCC-----------------
Confidence            99999999999995 8999999999999999999999999998865   59999999997530                 


Q ss_pred             ccHHHHHHHHHHHHHHHHhCCCCCceeeeEEEEecCCCCCCCCccccccccchHHHHHHHHH
Q 006111          585 SLVQLQNYILSELKNAAERNKLRGFEHIKGVILDPRPFDMERDLVTATLKKKRNKLLIYYQV  646 (660)
Q Consensus       585 ~~~~~~~~~~~~l~~~~~~~~l~~~~~p~~i~~~~~~~~~~~~P~t~~GKv~R~~l~~~~~~  646 (660)
                           .....++|.++++ ..++.|++|+.|.++      +++|+|++||++|+.|++++..
T Consensus       478 -----~~~~~~~i~~~~~-~~l~~~~~P~~v~~v------~~lP~t~sGKi~r~~lr~~~~~  527 (534)
T COG0318         478 -----AELTAEELRAFLR-KRLALYKVPRIVVFV------DELPRTASGKIDRRALREEYRA  527 (534)
T ss_pred             -----CCCCHHHHHHHHH-hhhhcccCCeEEEEe------CCCCCCCchhhhHHHHHHHHHh
Confidence                 0002344455554 578999999999997      4568999999999999999987

>PRK08180 feruloyl-CoA synthase; Reviewed

Probab=100.00  E-value=8.8e-68  Score=592.23  Aligned_cols=540  Identities=20%  Similarity=0.258  Sum_probs=426.6

Q ss_pred             CCcHHHHHHHHHHhCCCCCceeeeccccCCCCCceEEeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEeCCchhHHHHHHH
Q 006111           41 LNTAWDIFSMSVQKYPGNRMLGWRPFVDGKFGPYVWKTYKEVYEEVLQIVSALRASGAEPGCRVGIYGANCPQWVEAMEA  120 (660)
Q Consensus        41 ~~ti~~~l~~~a~~~pd~~a~~~~~~~d~~~~~~~~~Ty~ql~~~v~~lA~~L~~~Gl~~gd~V~l~~~n~~e~~~~~lA  120 (660)
                      ..++.+.|+++++++|+++|+++.   + ..+.++++||+||.++++++|.+|.+.|+++||+|+++++|++++++++||
T Consensus        38 ~~~l~~~l~~~a~~~p~~~a~~~~---~-~~~~~~~~Ty~el~~~v~~~A~~L~~~Gv~~gd~Vai~~~n~~e~~~~~lA  113 (614)
T PRK08180         38 PRRLTDRLVHWAQEAPDRVFLAER---G-ADGGWRRLTYAEALERVRAIAQALLDRGLSAERPLMILSGNSIEHALLALA  113 (614)
T ss_pred             CccHHHHHHHHHHHCCCCceeeec---c-CCCceeEeeHHHHHHHHHHHHHHHHHcCCCCCCEEEEecCCCHHHHHHHHH
Confidence            478999999999999999999864   2 233467899999999999999999999999999999999999999999999


Q ss_pred             HHhCCCeEEecCCCCC-----hhHHHHHHhcccceEEEEccch-hhhhhccccccccCccEEEEecCCcHHHHHHHhhCC
Q 006111          121 CNALSLICVPLYDTLG-----PGAVNFILDHAEIDFVFVQDKK-VKELLSPDCRSAQRLRVMVCFTSLTAEQKEMAVQTG  194 (660)
Q Consensus       121 ~~~~G~~~vpl~~~~~-----~~~l~~~l~~~~~~~ii~~~~~-~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~  194 (660)
                      |+++|++++|+++.++     .+++.++++.++++++|+++.. ..........  ... .++..+....         .
T Consensus       114 ~~~~Gav~vpl~~~~~~~~~~~~~l~~~l~~~~~~~li~~~~~~~~~~~~~~~~--~~~-~~i~~~~~~~---------~  181 (614)
T PRK08180        114 AMYAGVPYAPVSPAYSLVSQDFGKLRHVLELLTPGLVFADDGAAFARALAAVVP--ADV-EVVAVRGAVP---------G  181 (614)
T ss_pred             HHHcCCeEeeeccccccccCCHHHHHHHHhcCCCcEEEEcCHHHHHHHHhhhcc--CCc-eEEEecCCCC---------C
Confidence            9999999999999998     7899999999999999998642 1111111111  111 2222221100         0


Q ss_pred             cceeeHHHHHhcCccCC--ccCCCCCCCceEEEEecCCCCCCCceeeecchhHHHHhhhhhhhcccccCCCC--CCcEEE
Q 006111          195 IKPYSWDEFLHLGKVNE--MEILPPQPFNICTIMYTSGTSGDPKGVVLTHETIATFVSGVDLFLDQFEDKMT--VDDVYL  270 (660)
Q Consensus       195 ~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~i~~TSGTTG~pK~v~~th~~l~~~~~~~~~~~~~~~~~~~--~~~~~l  270 (660)
                      ....+|.++........  .......++++++|+|||||||.||+|++||+++.+.+......+     +..  .+++++
T Consensus       182 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~a~ilyTSGTTG~PKgV~~sh~~l~~~~~~~~~~~-----~~~~~~~~~~l  256 (614)
T PRK08180        182 RAATPFAALLATPPTAAVDAAHAAVGPDTIAKFLFTSGSTGLPKAVINTHRMLCANQQMLAQTF-----PFLAEEPPVLV  256 (614)
T ss_pred             cccccHHHHhccccccchhhhccCCCcCceEEEEECCCCCCCCCEEEeehHHHHHHHHHHHhhc-----cccCCCCcEEE
Confidence            01234555554321111  111234679999999999999999999999999998887765554     332  568999


Q ss_pred             EecChhHHHHHHH-HHHHhhcCcEEEEecC-----ChhhHHHHhhhhcCeEEEechHHHHHHHHHHHHHHHhhchHHHHH
Q 006111          271 SFLPLAHILDRVI-EEYFFRRGASVGYYHG-----DLNALRDDLMELKPTLLAGVPRVFEKIHEGIKKALEELRPLRRRI  344 (660)
Q Consensus       271 ~~~pl~~~~g~~~-~l~~l~~G~~~v~~~~-----~~~~~~~~i~~~~~t~~~~~p~~~~~l~~~~~~~~~~~~~~~~~~  344 (660)
                      +++|++|.+++.. .+.+++.|+++++.+.     .+..+++.++++++|+++++|.++..|++.......         
T Consensus       257 ~~lPl~h~~g~~~~~~~~l~~G~~v~~~~~~~~~~~~~~~l~~i~~~~~t~~~~vP~~~~~l~~~~~~~~~---------  327 (614)
T PRK08180        257 DWLPWNHTFGGNHNLGIVLYNGGTLYIDDGKPTPGGFDETLRNLREISPTVYFNVPKGWEMLVPALERDAA---------  327 (614)
T ss_pred             EecchHHHhhHHHHHHHHHhcCCEEEEeCCCccchhHHHHHHHHHHhCCcEEechHHHHHHHHHHHHhchh---------
Confidence            9999999999865 5677999999998753     345788899999999999999999998764332110         


Q ss_pred             HHHHHHHHHHHHhhCCCCCCcchhhhHHHHHHHHHHhCCcEeEEEEccCCCCHHHHHHHHHh----cC--CceeeecCCC
Q 006111          345 FDALYKYKLAWMNMGYKQREASPLADLLAFRKVKARLGGRLRLVISGGAPLSTEVEEFLRVT----CC--AFLVQGYGLT  418 (660)
Q Consensus       345 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lr~i~~~G~~l~~~~~~~~~~~----~~--~~v~~~YG~t  418 (660)
                                              .        ....+++||.+++||+++++++.+.+.+.    +|  +++++.||+|
T Consensus       328 ------------------------~--------~~~~~~~lr~v~~gGa~l~~~~~~~~~~~~~~~~g~~~~l~~~YG~T  375 (614)
T PRK08180        328 ------------------------L--------RRRFFSRLKLLFYAGAALSQDVWDRLDRVAEATCGERIRMMTGLGMT  375 (614)
T ss_pred             ------------------------h--------hhhhccceeEEEEccCCCCHHHHHHHHHHHHhhcCCCceeeeeeccc
Confidence                                    0        11122599999999999999999998874    33  6799999999


Q ss_pred             CCCCceecccCCCccccCccCCCccCeeEEeeecCCCCCCCCCCCCCceEEEccCCcccccCCCchhhhhcc-cCCcccc
Q 006111          419 ETCGPTTVCFPDEMCMVGTAGPVSVYSELRLEEVPEMGYSPLDDPPCGEVCVRGKTLFSGYYKNPDLTRESI-IDGWFHT  497 (660)
Q Consensus       419 E~~~~~~~~~~~~~~~~~~~G~~~~~~~v~ivd~~~~~~~~~~~~~~Gei~v~g~~~~~gy~~~~~~~~~~~-~~g~~~T  497 (660)
                      |++.+++...... ..++++|+|++|+++++++ +         +..|||+|+||+++.||+++++.+.+.| .+|||+|
T Consensus       376 E~~~~~~~~~~~~-~~~~svG~p~pg~~v~i~d-~---------~~~GEi~vrg~~v~~GY~~~p~~t~~~~~~dgw~~T  444 (614)
T PRK08180        376 ETAPSATFTTGPL-SRAGNIGLPAPGCEVKLVP-V---------GGKLEVRVKGPNVTPGYWRAPELTAEAFDEEGYYRS  444 (614)
T ss_pred             ccCCceEeccccc-CCCCcccCccCCcEEEEec-C---------CCCcEEEEecCccchhhcCChhHhHhhcccCCceec
Confidence            9987766544333 3458999999999999998 3         2369999999999999999999999999 6899999


Q ss_pred             CceEEE----CCCCcEEEEeccCCeeEcCCCeeec--chhHHHHHhcCcCcceEEEEecCCCCeEEEEEEcChhhHHHHH
Q 006111          498 GDIGQI----LPNGVVKIIDRKKNLIKISQGEYVA--LEYLENVYCVAPIIEDIWVYGDSLKSMLVAVVVPCEEDTKKWA  571 (660)
Q Consensus       498 GDl~~~----~~~G~l~~~GR~~d~i~~~~G~~v~--~~~iE~~l~~~p~V~~~~V~~~~~~~~~~a~v~~~~~~~~~~~  571 (660)
                      ||+|++    |++|.|+++||.+|+|++++|++|+  |.|+|.++.+||.|.+|+|+|.++ +.+.|+|+++++....+.
T Consensus       445 GDlg~~~~~~d~~g~l~i~GR~~d~i~~~~G~~i~~~p~Eie~~l~~~p~V~~a~V~g~~~-~~~~a~V~~~~~~~~~~~  523 (614)
T PRK08180        445 GDAVRFVDPADPERGLMFDGRIAEDFKLSSGTWVSVGPLRARAVSAGAPLVQDVVITGHDR-DEIGLLVFPNLDACRRLA  523 (614)
T ss_pred             cceEEecCCcCCCCceEEecchhhhEEcCCCcEecchhhhHHHHhhcCchhheEEEEcCCC-CceEEEEEcCHHHHHHHH
Confidence            999999    4689999999999999877899777  778889999999999999999884 467899999987655554


Q ss_pred             HHCCCCCcHHHHhccHHHHHHHHHHHHHHHHhCCCCCceeeeEEEEecCCCCCCCCccccccccchHHHHHHHHHHHHHH
Q 006111          572 YSNGHAGSFLELCSLVQLQNYILSELKNAAERNKLRGFEHIKGVILDPRPFDMERDLVTATLKKKRNKLLIYYQVEIDQL  651 (660)
Q Consensus       572 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~l~~~~~p~~i~~~~~~~~~~~~P~t~~GKv~R~~l~~~~~~~i~~~  651 (660)
                      ... ...+..+.++..++.+++++.|.++.. ...+.+.+|+++.+++++|......+|++||++|+++.+.|+++|++|
T Consensus       524 ~~~-~~~~~~~~~~~~~l~~~~~~~l~~~~~-~~~~~~~~p~~~~~~~~~p~~~~gk~t~~~~~~R~~~~~~y~~~i~~l  601 (614)
T PRK08180        524 GLL-ADASLAEVLAHPAVRAAFRERLARLNA-QATGSSTRVARALLLDEPPSLDAGEITDKGYINQRAVLARRAALVEAL  601 (614)
T ss_pred             hhc-ccCCHHHHhcCHHHHHHHHHHHHHHHh-hccccHhheeEEEEecCCCCCccCccCccccccHHHHHHHhHHHHHHH
Confidence            332 122233445677899999999988876 445566799999999888888888999999999999999999999999


Q ss_pred             Hhhhc
Q 006111          652 YEKLA  656 (660)
Q Consensus       652 y~~~~  656 (660)
                      |....
T Consensus       602 Y~~~~  606 (614)
T PRK08180        602 YADEP  606 (614)
T ss_pred             hCCCC
Confidence            98543

>PTZ00237 acetyl-CoA synthetase; Provisional

Probab=100.00  E-value=9.6e-69  Score=601.10  Aligned_cols=533  Identities=17%  Similarity=0.214  Sum_probs=405.8

Q ss_pred             CCCCCcHHHHHHHHHHh--CCCCCceeeeccccCCCCCceEEeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEeCCchhHH
Q 006111           38 DSDLNTAWDIFSMSVQK--YPGNRMLGWRPFVDGKFGPYVWKTYKEVYEEVLQIVSALRASGAEPGCRVGIYGANCPQWV  115 (660)
Q Consensus        38 ~~~~~ti~~~l~~~a~~--~pd~~a~~~~~~~d~~~~~~~~~Ty~ql~~~v~~lA~~L~~~Gl~~gd~V~l~~~n~~e~~  115 (660)
                      ....|+..++|+++++.  +|+++|+++.   ...++..+++||+||.++++++|++|++.|+++||+|+++++|+++++
T Consensus        55 ~~~~n~~~~~l~~~~~~~~~~~~~A~~~~---~~~~~~~~~~Ty~eL~~~v~~lA~~L~~~Gv~~GDrV~i~~~n~~e~~  131 (647)
T PTZ00237         55 GGELNTCYNVLDIHVKNPLKRDQDALIYE---CPYLKKTIKLTYYQLYEKVCEFSRVLLNLNISKNDNVLIYMANTLEPL  131 (647)
T ss_pred             CCeeeHHHHHHHHhhcccCCCCceEEEEE---cCCCCceEEEEHHHHHHHHHHHHHHHHHcCCCCCCEEEEECCCCHHHH
Confidence            34467788888888765  7999999875   332333578999999999999999999999999999999999999999


Q ss_pred             HHHHHHHhCCCeEEecCCCCChhHHHHHHhcccceEEEEccch---------hhhhhccccccccCccEEEEecCCc---
Q 006111          116 EAMEACNALSLICVPLYDTLGPGAVNFILDHAEIDFVFVQDKK---------VKELLSPDCRSAQRLRVMVCFTSLT---  183 (660)
Q Consensus       116 ~~~lA~~~~G~~~vpl~~~~~~~~l~~~l~~~~~~~ii~~~~~---------~~~~~~~~~~~~~~~~~i~~~~~~~---  183 (660)
                      +++|||+++|++++|+++.++.+++..+|++++++++|+++..         ...+.+...........++......   
T Consensus       132 ~~~lA~~~~Gav~vpl~~~~~~~~l~~~l~~~~~~~li~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vi~~~~~~~~~  211 (647)
T PTZ00237        132 IAMLSCARIGATHCVLFDGYSVKSLIDRIETITPKLIITTNYGILNDEIITFTPNLKEAIELSTFKPSNVITLFRNDITS  211 (647)
T ss_pred             HHHHHHHHhCcEEEeeCCCCCHHHHHHHHHhcCCCEEEEcccceeCCceechHHHHHHHHhcccCCCCEEEEEEcCCccc
Confidence            9999999999999999999999999999999999999997632         1111111110000123344331110   


Q ss_pred             HHHHHH--HhhCCcceeeHHHHHhcCc----cCCccCCCCCCCceEEEEecCCCCCCCceeeecchh-HHHHhhhhhhhc
Q 006111          184 AEQKEM--AVQTGIKPYSWDEFLHLGK----VNEMEILPPQPFNICTIMYTSGTSGDPKGVVLTHET-IATFVSGVDLFL  256 (660)
Q Consensus       184 ~~~~~~--~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~i~~TSGTTG~pK~v~~th~~-l~~~~~~~~~~~  256 (660)
                      ......  ..........|.+++....    .......+..++++++|+|||||||.||+|+++|.+ +......+...+
T Consensus       212 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~IlyTSGTTG~PKgV~~sh~~~l~~~~~~~~~~~  291 (647)
T PTZ00237        212 ESDLKKIETIPTIPNTLSWYDEIKKIKENNQSPFYEYVPVESSHPLYILYTSGTTGNSKAVVRSNGPHLVGLKYYWRSII  291 (647)
T ss_pred             ccccccccccCCCcccccHHHHHhhhccccCCCCCCceeeCCCCcEEEEEcCCCCCCCCeEEEcCcHHHHHHHHHHHHhc
Confidence            000000  0000011235666654321    111123345789999999999999999999999998 443332223233


Q ss_pred             ccccCCCCCCcEEEEecChhHHHHHHHHHHHhhcCcEEEEecCC-------hhhHHHHhhhhcCeEEEechHHHHHHHHH
Q 006111          257 DQFEDKMTVDDVYLSFLPLAHILDRVIEEYFFRRGASVGYYHGD-------LNALRDDLMELKPTLLAGVPRVFEKIHEG  329 (660)
Q Consensus       257 ~~~~~~~~~~~~~l~~~pl~~~~g~~~~l~~l~~G~~~v~~~~~-------~~~~~~~i~~~~~t~~~~~p~~~~~l~~~  329 (660)
                           ....++++++..|+.|..+...++.+++.|+++++.+++       +..+++.|+++++|+++++|++++.|.+.
T Consensus       292 -----~~~~~d~~~~~~~~~w~~~~~~~~~~l~~G~t~v~~~~~~~~p~~~~~~~~~~i~~~~vt~~~~~P~~~~~l~~~  366 (647)
T PTZ00237        292 -----EKDIPTVVFSHSSIGWVSFHGFLYGSLSLGNTFVMFEGGIIKNKHIEDDLWNTIEKHKVTHTLTLPKTIRYLIKT  366 (647)
T ss_pred             -----CCCCCcEEEEcCCCceEeeHHHHHHHHhCCcEEEEeCCCCCCCCCchHHHHHHHHHhCeEEEEeCHHHHHHHHhh
Confidence                 566789999999999987666678889999999998752       57899999999999999999999988653


Q ss_pred             HHHHHHhhchHHHHHHHHHHHHHHHHHhhCCCCCCcchhhhHHHHHHHHHHhCCcEeEEEEccCCCCHHHHHHHHHhcCC
Q 006111          330 IKKALEELRPLRRRIFDALYKYKLAWMNMGYKQREASPLADLLAFRKVKARLGGRLRLVISGGAPLSTEVEEFLRVTCCA  409 (660)
Q Consensus       330 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lr~i~~~G~~l~~~~~~~~~~~~~~  409 (660)
                      .....                                .....+++        ++||.++++|+++++++.+++++.+|+
T Consensus       367 ~~~~~--------------------------------~~~~~~~l--------~~Lr~i~~~G~~l~~~~~~~~~~~~g~  406 (647)
T PTZ00237        367 DPEAT--------------------------------IIRSKYDL--------SNLKEIWCGGEVIEESIPEYIENKLKI  406 (647)
T ss_pred             Ccccc--------------------------------ccccccCc--------chheEEEecCccCCHHHHHHHHHhcCC
Confidence            11000                                00011112        489999999999999999999999999


Q ss_pred             ceeeecCCCCCCCceecccCCCccccCccCCCccCeeEEeeecCCCCCCCCCCCCCceEEEccC---CcccccCCCchhh
Q 006111          410 FLVQGYGLTETCGPTTVCFPDEMCMVGTAGPVSVYSELRLEEVPEMGYSPLDDPPCGEVCVRGK---TLFSGYYKNPDLT  486 (660)
Q Consensus       410 ~v~~~YG~tE~~~~~~~~~~~~~~~~~~~G~~~~~~~v~ivd~~~~~~~~~~~~~~Gei~v~g~---~~~~gy~~~~~~~  486 (660)
                      ++++.||+||+++.++..........+++|.|+++++++|+| +++..+  +.|+.|||++++|   +++.|||++++.+
T Consensus       407 ~i~~~yG~TE~~~~~~~~~~~~~~~~~s~G~p~~g~~~~i~d-~~g~~~--~~ge~GEl~v~~p~~p~~~~gy~~~~~~~  483 (647)
T PTZ00237        407 KSSRGYGQTEIGITYLYCYGHINIPYNATGVPSIFIKPSILS-EDGKEL--NVNEIGEVAFKLPMPPSFATTFYKNDEKF  483 (647)
T ss_pred             CEEeeechHHhChhhhccCCCCCCCCCCCccCcCCceEEEEC-CCCCCC--CCCCceEEEEeccCCchhhCceeCCHHHH
Confidence            999999999998765543332223347999999999999999 666544  4568999999986   7899999999998


Q ss_pred             hhccc--CCccccCceEEECCCCcEEEEeccCCeeEcCCCeeecchhHHHHHhcCcCcceEEEEecCCC---CeEEEEEE
Q 006111          487 RESII--DGWFHTGDIGQILPNGVVKIIDRKKNLIKISQGEYVALEYLENVYCVAPIIEDIWVYGDSLK---SMLVAVVV  561 (660)
Q Consensus       487 ~~~~~--~g~~~TGDl~~~~~~G~l~~~GR~~d~i~~~~G~~v~~~~iE~~l~~~p~V~~~~V~~~~~~---~~~~a~v~  561 (660)
                      .+.|.  +|||+|||+|++|++|+++++||+||+|++ +|++|+|.+||++|.+||.|.||+|+|.+++   +.++|+|+
T Consensus       484 ~~~f~~~~g~~~TGDlg~~d~dG~l~i~GR~dd~i~~-~G~rI~p~eIE~~l~~~p~V~eaavvg~~~~~~g~~~~a~Vv  562 (647)
T PTZ00237        484 KQLFSKFPGYYNSGDLGFKDENGYYTIVSRSDDQIKI-SGNKVQLNTIETSILKHPLVLECCSIGIYDPDCYNVPIGLLV  562 (647)
T ss_pred             HHHHhCCCCEEECCcEEEECCCCeEEEEeccCCEEEE-CCEEeCHHHHHHHHHhCCCceeeEEEeeEcCCCCCEEEEEEE
Confidence            88773  799999999999999999999999999997 7999999999999999999999999998864   58899999


Q ss_pred             cChhhHHHHHHHCCCCCcHHHHhccHHHHHHHHHHHHHHHHhCCCCCceeeeEEEEecCCCCCCCCccccccccchHHHH
Q 006111          562 PCEEDTKKWAYSNGHAGSFLELCSLVQLQNYILSELKNAAERNKLRGFEHIKGVILDPRPFDMERDLVTATLKKKRNKLL  641 (660)
Q Consensus       562 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~l~~~~~p~~i~~~~~~~~~~~~P~t~~GKv~R~~l~  641 (660)
                      ++++..       +..       .+   .+.+.++|+++++ .+|+.|++|+.|+++++      +|+|++||++|+.|+
T Consensus       563 ~~~~~~-------~~~-------~~---~~~l~~~i~~~~~-~~l~~~~~P~~i~~v~~------lP~T~sGKi~R~~Lr  618 (647)
T PTZ00237        563 LKQDQS-------NQS-------ID---LNKLKNEINNIIT-QDIESLAVLRKIIIVNQ------LPKTKTGKIPRQIIS  618 (647)
T ss_pred             eccCcc-------ccC-------CC---HHHHHHHHHHHHH-hhcCccccCcEEEEcCC------CCCCCCccEeHHHHH
Confidence            885320       000       00   1234566667765 68999999999999744      589999999999999


Q ss_pred             HHHHH
Q 006111          642 IYYQV  646 (660)
Q Consensus       642 ~~~~~  646 (660)
                      +++..
T Consensus       619 ~~~~~  623 (647)
T PTZ00237        619 KFLND  623 (647)
T ss_pred             HHHcC
Confidence            98753

>PRK12582 acyl-CoA synthetase; Provisional

Probab=100.00  E-value=4.4e-67  Score=587.70  Aligned_cols=564  Identities=21%  Similarity=0.251  Sum_probs=436.7

Q ss_pred             CCCCCCCCCCceeccc----cCCCCCCCCCCCCcHHHHHHHHHHhCCCCCceeeeccccCCCCCceEEeHHHHHHHHHHH
Q 006111           14 GKDGKPSVGPVYRNLL----ASNGFPSVDSDLNTAWDIFSMSVQKYPGNRMLGWRPFVDGKFGPYVWKTYKEVYEEVLQI   89 (660)
Q Consensus        14 ~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~ti~~~l~~~a~~~pd~~a~~~~~~~d~~~~~~~~~Ty~ql~~~v~~l   89 (660)
                      +-..+|...+.+|...    ...++|.. ....++.+.|+++++++||++|+++.   +...+.++++||+||.++++++
T Consensus        18 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~l~~~l~~~a~~~pd~~a~~~~---~~~~~~~~~~Ty~el~~~v~~l   93 (624)
T PRK12582         18 PLNWKPPDISVERRADGSIVIKSRHPLG-PYPRSIPHLLAKWAAEAPDRPWLAQR---EPGHGQWRKVTYGEAKRAVDAL   93 (624)
T ss_pred             ccccCCCceEEEEcCCceEEEecCCCCC-CcccCHHHHHHHHHHHCCCchheecc---cCCCCceEEeEHHHHHHHHHHH
Confidence            3345666677777642    22333333 33568999999999999999999875   3323557899999999999999


Q ss_pred             HHHHHHcCCCCCCEEEEEeCCchhHHHHHHHHHhCCCeEEecCCCCCh-----hHHHHHHhcccceEEEEccch-hhhhh
Q 006111           90 VSALRASGAEPGCRVGIYGANCPQWVEAMEACNALSLICVPLYDTLGP-----GAVNFILDHAEIDFVFVQDKK-VKELL  163 (660)
Q Consensus        90 A~~L~~~Gl~~gd~V~l~~~n~~e~~~~~lA~~~~G~~~vpl~~~~~~-----~~l~~~l~~~~~~~ii~~~~~-~~~~~  163 (660)
                      |++|.+.|+++||+|+++++|++++++++|||+++|++++|++|.++.     +++.++++.++++++|+++.. .....
T Consensus        94 A~~L~~~Gv~~gd~V~i~~~n~~e~~~~~lA~~~~G~v~vpl~p~~~~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~  173 (624)
T PRK12582         94 AQALLDLGLDPGRPVMILSGNSIEHALMTLAAMQAGVPAAPVSPAYSLMSHDHAKLKHLFDLVKPRVVFAQSGAPFARAL  173 (624)
T ss_pred             HHHHHHcCCCCCCEEEEecCCCHHHHHHHHHHHHcCCeEeeccCccccccCCHHHHHHHHHhcCCcEEEecCHHHHHHHH
Confidence            999999999999999999999999999999999999999999999885     899999999999999998642 12111


Q ss_pred             ccccccccCccEEEEecCCcHHHHHHHhhCCcceeeHHHHHhcCccCC--ccCCCCCCCceEEEEecCCCCCCCceeeec
Q 006111          164 SPDCRSAQRLRVMVCFTSLTAEQKEMAVQTGIKPYSWDEFLHLGKVNE--MEILPPQPFNICTIMYTSGTSGDPKGVVLT  241 (660)
Q Consensus       164 ~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~i~~TSGTTG~pK~v~~t  241 (660)
                      .....  ... .++..+....         ......+.++........  .......++++++|+|||||||.||+|++|
T Consensus       174 ~~~~~--~~~-~~i~~~~~~~---------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~a~i~yTSGTTG~PKgV~~t  241 (624)
T PRK12582        174 AALDL--LDV-TVVHVTGPGE---------GIASIAFADLAATPPTAAVAAAIAAITPDTVAKYLFTSGSTGMPKAVINT  241 (624)
T ss_pred             Hhhhh--cCc-eEEEEcCCCc---------ccccccHHHHhhcCCcchhhhhhccCCCCceEEEEEcCCCCCCCceEEee
Confidence            11111  112 2333322110         011234555443321110  111234678999999999999999999999


Q ss_pred             chhHHHHhhhhhhhcccccCCCC---CCcEEEEecChhHHHHHHH-HHHHhhcCcEEEEecC--C---hhhHHHHhhhhc
Q 006111          242 HETIATFVSGVDLFLDQFEDKMT---VDDVYLSFLPLAHILDRVI-EEYFFRRGASVGYYHG--D---LNALRDDLMELK  312 (660)
Q Consensus       242 h~~l~~~~~~~~~~~~~~~~~~~---~~~~~l~~~pl~~~~g~~~-~l~~l~~G~~~v~~~~--~---~~~~~~~i~~~~  312 (660)
                      |+++...+.......     ...   ..++++.++|++|.+|+.. ++.+++.|+++++.+.  +   ...+++.+++++
T Consensus       242 h~~l~~~~~~~~~~~-----~~~~~~~~~~~l~~lPl~h~~g~~~~~~~~l~~G~tvvl~~~~~~~~~~~~~~~~i~~~~  316 (624)
T PRK12582        242 QRMMCANIAMQEQLR-----PREPDPPPPVSLDWMPWNHTMGGNANFNGLLWGGGTLYIDDGKPLPGMFEETIRNLREIS  316 (624)
T ss_pred             HHHHHHHHHHHHHhc-----cccCCCCCceEEEechHHHHHhHHHHHHHHHhCceEEEEcCCCcccchHHHHHHHHHhcC
Confidence            999988776654333     222   3579999999999999876 4567899999988753  2   345677888999


Q ss_pred             CeEEEechHHHHHHHHHHHHHHHhhchHHHHHHHHHHHHHHHHHhhCCCCCCcchhhhHHHHHHHHHHhCCcEeEEEEcc
Q 006111          313 PTLLAGVPRVFEKIHEGIKKALEELRPLRRRIFDALYKYKLAWMNMGYKQREASPLADLLAFRKVKARLGGRLRLVISGG  392 (660)
Q Consensus       313 ~t~~~~~p~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lr~i~~~G  392 (660)
                      +|+++++|.++..|.+.....                                 +.....++        ++||.+++||
T Consensus       317 ~t~~~~vP~~~~~l~~~~~~~---------------------------------~~~~~~~~--------~slr~i~~gG  355 (624)
T PRK12582        317 PTVYGNVPAGYAMLAEAMEKD---------------------------------DALRRSFF--------KNLRLMAYGG  355 (624)
T ss_pred             CeEEeccCHHHHHHHHHHhhC---------------------------------HHHHHHHh--------hheeEEEecC
Confidence            999999999999886543211                                 11111112        4899999999


Q ss_pred             CCCCHHHHHHHHHhc------CCceeeecCCCCCCCceecccCCCccccCccCCCccCeeEEeeecCCCCCCCCCCCCCc
Q 006111          393 APLSTEVEEFLRVTC------CAFLVQGYGLTETCGPTTVCFPDEMCMVGTAGPVSVYSELRLEEVPEMGYSPLDDPPCG  466 (660)
Q Consensus       393 ~~l~~~~~~~~~~~~------~~~v~~~YG~tE~~~~~~~~~~~~~~~~~~~G~~~~~~~v~ivd~~~~~~~~~~~~~~G  466 (660)
                      +++++++.+.+.+.+      +++++++||+||++.+++...... ...+++|+|++|+++++++          .|+.|
T Consensus       356 a~l~~~~~~~~~~~~~~~~g~~~~l~~~YG~TE~~~~~~~~~~~~-~~~~svG~p~pg~~v~i~~----------~G~~G  424 (624)
T PRK12582        356 ATLSDDLYERMQALAVRTTGHRIPFYTGYGATETAPTTTGTHWDT-ERVGLIGLPLPGVELKLAP----------VGDKY  424 (624)
T ss_pred             CCCCHHHHHHHHHHHHhhcCCCceEEeccccccccceeecccCCC-CCCCCCCcCCCCcEEEEcc----------CCCce
Confidence            999999999998753      368999999999987665333222 3458999999999999976          34689


Q ss_pred             eEEEccCCcccccCCCchhhhhcc-cCCccccCceEEE-C---CCCcEEEEeccCCeeEcCCCeeecchhHH--HHHhcC
Q 006111          467 EVCVRGKTLFSGYYKNPDLTRESI-IDGWFHTGDIGQI-L---PNGVVKIIDRKKNLIKISQGEYVALEYLE--NVYCVA  539 (660)
Q Consensus       467 ei~v~g~~~~~gy~~~~~~~~~~~-~~g~~~TGDl~~~-~---~~G~l~~~GR~~d~i~~~~G~~v~~~~iE--~~l~~~  539 (660)
                      ||+|+|++++.||+++++.+.+.| .+|||+|||+|++ |   ++|+|+++||.||+|++++|++|+|.+||  .++.+|
T Consensus       425 El~vrg~~v~~GY~~~p~~t~~~f~~dgw~~TGDlg~~~d~~~~~g~l~i~GR~~d~i~~~~G~~i~p~~iE~e~~l~~~  504 (624)
T PRK12582        425 EVRVKGPNVTPGYHKDPELTAAAFDEEGFYRLGDAARFVDPDDPEKGLIFDGRVAEDFKLSTGTWVSVGTLRPDAVAACS  504 (624)
T ss_pred             EEEEECCcccccccCCccchhhhcCccCCccccceEEecCCcCCCCceEEeccchhhEecCCCcEechHHHHHHHHHhcC
Confidence            999999999999999999999999 7899999999998 4   46999999999999998789999998885  677899


Q ss_pred             cCcceEEEEecCCCCeEEEEEEcChhhHHHHHHHCCCCCcHHHHhccHHHHHHHHHHHHHHHHhCCCCCce-eeeEEEEe
Q 006111          540 PIIEDIWVYGDSLKSMLVAVVVPCEEDTKKWAYSNGHAGSFLELCSLVQLQNYILSELKNAAERNKLRGFE-HIKGVILD  618 (660)
Q Consensus       540 p~V~~~~V~~~~~~~~~~a~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~l~~~~-~p~~i~~~  618 (660)
                      |.|.+|+|+|.+ ...+.++|++.......+....+.  ...+.++..++.+++++.|.+++.  .++.+. +|+.+.++
T Consensus       505 p~V~~a~VvG~~-~~~~g~lv~p~~~~~~~~~~~~~~--~~~~~~~~~~l~~~~~~~l~~~~~--~~~~~~~~~~~~~~~  579 (624)
T PRK12582        505 PVIHDAVVAGQD-RAFIGLLAWPNPAACRQLAGDPDA--APEDVVKHPAVLAILREGLSAHNA--EAGGSSSRIARALLM  579 (624)
T ss_pred             cchheEEEEcCC-CCcEEEEEecCHHHHHHHHhcCCC--CHHHHhcCHHHHHHHHHHHHHHHh--hcCCChhheEEEEEe
Confidence            999999999986 567788888887765444332221  233445677899999999988875  688898 99999999


Q ss_pred             cCCCCCCCCccccccccchHHHHHHHHHHHHHHHhhh
Q 006111          619 PRPFDMERDLVTATLKKKRNKLLIYYQVEIDQLYEKL  655 (660)
Q Consensus       619 ~~~~~~~~~P~t~~GKv~R~~l~~~~~~~i~~~y~~~  655 (660)
                      +++|+.+..++|++||++|+++.++|+++||+||...
T Consensus       580 ~~~~~~~~g~~t~~~~~~R~~~~~~y~~~i~~ly~~~  616 (624)
T PRK12582        580 TEPPSIDAGEITDKGYINQRAVLERRAALVERLYAEP  616 (624)
T ss_pred             CCCCCccCCcCCccccccHHHHHHHHHHHHHHHhcCC
Confidence            9999888999999999999999999999999999854

>PLN02860 o-succinylbenzoate-CoA ligase

Probab=100.00  E-value=1e-67  Score=586.86  Aligned_cols=526  Identities=20%  Similarity=0.171  Sum_probs=406.3

Q ss_pred             CCcHHHHHHHHHHhCCCCCceeeeccccCCCCCceEEeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEeCCchhHHHHHHH
Q 006111           41 LNTAWDIFSMSVQKYPGNRMLGWRPFVDGKFGPYVWKTYKEVYEEVLQIVSALRASGAEPGCRVGIYGANCPQWVEAMEA  120 (660)
Q Consensus        41 ~~ti~~~l~~~a~~~pd~~a~~~~~~~d~~~~~~~~~Ty~ql~~~v~~lA~~L~~~Gl~~gd~V~l~~~n~~e~~~~~lA  120 (660)
                      .-++.++|++.++++|+++|+++.   +      +++||+||.++++++|.+|.+.|+++||+|+++++|+++++++++|
T Consensus         6 ~~~~~~~~~~~~~~~p~~~a~~~~---~------~~~Ty~el~~~~~~la~~L~~~Gv~~gd~V~v~~~n~~~~~~~~la   76 (563)
T PLN02860          6 QAHICQCLTRLATLRGNAVVTISG---N------RRRTGHEFVDGVLSLAAGLLRLGLRNGDVVAIAALNSDLYLEWLLA   76 (563)
T ss_pred             hhHHHHHHHHHHHhcCCceEEecC---C------ceeeHHHHHHHHHHHHHHHHHhCCCCCCEEEEEcCCCHHHHHHHHH
Confidence            468999999999999999999754   3      4799999999999999999999999999999999999999999999


Q ss_pred             HHhCCCeEEecCCCCChhHHHHHHhcccceEEEEccchhhhhhccccccccCccEEEEecCCcHHHHHHHhhCCcceeeH
Q 006111          121 CNALSLICVPLYDTLGPGAVNFILDHAEIDFVFVQDKKVKELLSPDCRSAQRLRVMVCFTSLTAEQKEMAVQTGIKPYSW  200 (660)
Q Consensus       121 ~~~~G~~~vpl~~~~~~~~l~~~l~~~~~~~ii~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~  200 (660)
                      |+++|++++|+++.++.+++..+++.+++++++++...............+.+..++..++......    ........+
T Consensus        77 ~~~~Gav~vpl~~~~~~~~l~~~l~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~----~~~~~~~~~  152 (563)
T PLN02860         77 VACAGGIVAPLNYRWSFEEAKSAMLLVRPVMLVTDETCSSWYEELQNDRLPSLMWQVFLESPSSSVF----IFLNSFLTT  152 (563)
T ss_pred             HhhccEEEEeCCcccCHHHHHHHHHhcCceEEEEecccchHHHHHhhccCCceeEEEEecCcccccc----cchhhcccc
Confidence            9999999999999999999999999999999999876432221111112223333333332110000    000001111


Q ss_pred             HHHHhcCccCCccCCCCCCCceEEEEecCCCCCCCceeeecchhHHHHhhhhhhhcccccCCCCCCcEEEEecChhHHHH
Q 006111          201 DEFLHLGKVNEMEILPPQPFNICTIMYTSGTSGDPKGVVLTHETIATFVSGVDLFLDQFEDKMTVDDVYLSFLPLAHILD  280 (660)
Q Consensus       201 ~~~~~~~~~~~~~~~~~~~~~~~~i~~TSGTTG~pK~v~~th~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~pl~~~~g  280 (660)
                      +++...............++++++++|||||||.||+|.++|+++..........+     ++..+|+++..+|++|.++
T Consensus       153 ~~~~~~~~~~~~~~~~~~~~~~a~i~~TSGTTG~PKgV~~s~~~~~~~~~~~~~~~-----~~~~~d~~l~~~pl~h~~g  227 (563)
T PLN02860        153 EMLKQRALGTTELDYAWAPDDAVLICFTSGTTGRPKGVTISHSALIVQSLAKIAIV-----GYGEDDVYLHTAPLCHIGG  227 (563)
T ss_pred             chhccCccccccccCCCCCCCeEEEEecCCCCCCCceEEeehHHHHHHHHHHHhhc-----CCCCCCEEEEecCchhhcc
Confidence            11111110111111234678999999999999999999999999987776655555     7888999999999999999


Q ss_pred             HHHHHHHhhcCcEEEEecC-ChhhHHHHhhhhcCeEEEechHHHHHHHHHHHHHHHhhchHHHHHHHHHHHHHHHHHhhC
Q 006111          281 RVIEEYFFRRGASVGYYHG-DLNALRDDLMELKPTLLAGVPRVFEKIHEGIKKALEELRPLRRRIFDALYKYKLAWMNMG  359 (660)
Q Consensus       281 ~~~~l~~l~~G~~~v~~~~-~~~~~~~~i~~~~~t~~~~~p~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  359 (660)
                      +...+.++..|+++++.+. ++..+++.|+++++|+++++|.++..|.+.......                        
T Consensus       228 ~~~~~~~l~~G~~~v~~~~~~~~~~~~~i~~~~vt~~~~~P~~~~~l~~~~~~~~~------------------------  283 (563)
T PLN02860        228 LSSALAMLMVGACHVLLPKFDAKAALQAIKQHNVTSMITVPAMMADLISLTRKSMT------------------------  283 (563)
T ss_pred             HHHHHHHHHcCceEEecCCCCHHHHHHHHHHhCCeeEEeChHHHHHHHHhhhhhhc------------------------
Confidence            8878888999999988875 999999999999999999999999988754321100                        


Q ss_pred             CCCCCcchhhhHHHHHHHHHHhCCcEeEEEEccCCCCHHHHHHHHHhc-CCceeeecCCCCCCCceecccCCC-------
Q 006111          360 YKQREASPLADLLAFRKVKARLGGRLRLVISGGAPLSTEVEEFLRVTC-CAFLVQGYGLTETCGPTTVCFPDE-------  431 (660)
Q Consensus       360 ~~~~~~~~~~~~~~~~~~~~~~~~~lr~i~~~G~~l~~~~~~~~~~~~-~~~v~~~YG~tE~~~~~~~~~~~~-------  431 (660)
                                         ....+++|.+++||+++++.+.+.+++.+ +.++++.||+||+++.++......       
T Consensus       284 -------------------~~~~~~lr~~~~gG~~l~~~~~~~~~~~~~~~~~~~~YG~TE~~~~~~~~~~~~~~~~~~~  344 (563)
T PLN02860        284 -------------------WKVFPSVRKILNGGGSLSSRLLPDAKKLFPNAKLFSAYGMTEACSSLTFMTLHDPTLESPK  344 (563)
T ss_pred             -------------------cccccceeEEEeCCCcCCHHHHHHHHHhcCCCceecCCCccccCcccccccccccccccch
Confidence                               00114899999999999999999999988 789999999999986554322111       


Q ss_pred             ---------------ccccCccCCCccCeeEEeeecCCCCCCCCCCCCCceEEEccCCcccccCCCchhhhhcc-cCCcc
Q 006111          432 ---------------MCMVGTAGPVSVYSELRLEEVPEMGYSPLDDPPCGEVCVRGKTLFSGYYKNPDLTRESI-IDGWF  495 (660)
Q Consensus       432 ---------------~~~~~~~G~~~~~~~v~ivd~~~~~~~~~~~~~~Gei~v~g~~~~~gy~~~~~~~~~~~-~~g~~  495 (660)
                                     .....++|+|++++++++++ ++       .++.|||+++|+.++.||+++++.+.+.| .+|||
T Consensus       345 ~~~~~~~~~~~~~~~~~~~~~vG~p~~~~~v~i~~-~~-------~g~~Gel~v~g~~~~~GY~~~~~~t~~~~~~~g~~  416 (563)
T PLN02860        345 QTLQTVNQTKSSSVHQPQGVCVGKPAPHVELKIGL-DE-------SSRVGRILTRGPHVMLGYWGQNSETASVLSNDGWL  416 (563)
T ss_pred             hhhhhhcccccccccccCCcccCCccCCcEEEEec-CC-------CCceeEEEEecCcccccccCCccccchhccCCCeE
Confidence                           11123789999999999998 44       35789999999999999999999998888 78999


Q ss_pred             ccCceEEECCCCcEEEEeccCCeeEcCCCeeecchhHHHHHhcCcCcceEEEEecCCC---CeEEEEEEcChhhHHHHHH
Q 006111          496 HTGDIGQILPNGVVKIIDRKKNLIKISQGEYVALEYLENVYCVAPIIEDIWVYGDSLK---SMLVAVVVPCEEDTKKWAY  572 (660)
Q Consensus       496 ~TGDl~~~~~~G~l~~~GR~~d~i~~~~G~~v~~~~iE~~l~~~p~V~~~~V~~~~~~---~~~~a~v~~~~~~~~~~~~  572 (660)
                      +|||+|++|++|.+++.||.+|+|++ +|++|+|.+||++|.+||+|.+|+|++.++.   +.++|+|++.++....  .
T Consensus       417 ~TGDl~~~d~dG~l~~~GR~~d~i~~-~G~~v~p~eIE~~l~~~p~V~~~~v~~~~~~~~~~~~~a~v~~~~~~~~~--~  493 (563)
T PLN02860        417 DTGDIGWIDKAGNLWLIGRSNDRIKT-GGENVYPEEVEAVLSQHPGVASVVVVGVPDSRLTEMVVACVRLRDGWIWS--D  493 (563)
T ss_pred             EccceEEEcCCCCEEEeecccceeEE-CCEEccHHHHHHHHHhCCCcceeEEEEEecCcCCceEEEEEEECCccccc--c
Confidence            99999999999999999999999997 8999999999999999999999999997654   5899999988652100  0


Q ss_pred             HCCCCCcHHHHhccHHHHHHHHHHHHHHHHhCCCCCceeeeEEEEecCCCCCCCCccccccccchHHHHHHHHHHHHHH
Q 006111          573 SNGHAGSFLELCSLVQLQNYILSELKNAAERNKLRGFEHIKGVILDPRPFDMERDLVTATLKKKRNKLLIYYQVEIDQL  651 (660)
Q Consensus       573 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~l~~~~~p~~i~~~~~~~~~~~~P~t~~GKv~R~~l~~~~~~~i~~~  651 (660)
                      .   ..  ..   .........+.|.+++++..|+.|++|+.++++.     +.+|+|++||++|++|++++.++++.+
T Consensus       494 ~---~~--~~---~~~~~~~~~~~l~~~~~~~~L~~~~~P~~~~~~~-----~~lP~t~~GKi~r~~L~~~~~~~~~~~  559 (563)
T PLN02860        494 N---EK--EN---AKKNLTLSSETLRHHCREKNLSRFKIPKLFVQWR-----KPFPLTTTGKIRRDEVRREVLSHLQSL  559 (563)
T ss_pred             c---cc--hh---hcccccccHHHHHHHHhhCcccccccceEEEEEe-----cCCCCCcccchhHHHHHHHHHHHHhcc
Confidence            0   00  00   0000011234566666544699999999988763     335899999999999999998877654

>PLN02654 acetate-CoA ligase

Probab=100.00  E-value=1.3e-67  Score=593.78  Aligned_cols=527  Identities=17%  Similarity=0.162  Sum_probs=408.3

Q ss_pred             CCCCC-CCcHHHHHHHHHH-hCCCCCceeeeccccCCCCCceEEeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEeCCchh
Q 006111           36 SVDSD-LNTAWDIFSMSVQ-KYPGNRMLGWRPFVDGKFGPYVWKTYKEVYEEVLQIVSALRASGAEPGCRVGIYGANCPQ  113 (660)
Q Consensus        36 ~~~~~-~~ti~~~l~~~a~-~~pd~~a~~~~~~~d~~~~~~~~~Ty~ql~~~v~~lA~~L~~~Gl~~gd~V~l~~~n~~e  113 (660)
                      +.+.. .|...++|+++++ .+|+++|+++.   ....+..+++||+||.+++.++|++|++.|+++||+|+++++|+++
T Consensus        81 wf~g~~~N~~~~~l~~~~~~~~~~~~Al~~~---~~~~~~~~~~Ty~eL~~~v~~lA~~L~~~Gv~~GdrV~i~~pn~~e  157 (666)
T PLN02654         81 WFKGGKTNICYNCLDRNVEAGNGDKIAIYWE---GNEPGFDASLTYSELLDRVCQLANYLKDVGVKKGDAVVIYLPMLME  157 (666)
T ss_pred             ccCCCEeeHHHHHHHHhhccCCCCCEEEEEE---cCCCCceEEEeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEcCCCHH
Confidence            44444 4555788887776 48999999875   3334445789999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHhCCCeEEecCCCCChhHHHHHHhcccceEEEEccchhhhhh---------cccccc---ccCccEEEEecC
Q 006111          114 WVEAMEACNALSLICVPLYDTLGPGAVNFILDHAEIDFVFVQDKKVKELL---------SPDCRS---AQRLRVMVCFTS  181 (660)
Q Consensus       114 ~~~~~lA~~~~G~~~vpl~~~~~~~~l~~~l~~~~~~~ii~~~~~~~~~~---------~~~~~~---~~~~~~i~~~~~  181 (660)
                      +++++|||+++|++++|+++.++.+++..+|+.++++++|+++.......         ......   ......++..+.
T Consensus       158 ~v~a~lA~~~~Gav~vpv~~~~~~~~l~~~l~~~~~~~li~~~~~~~~~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  237 (666)
T PLN02654        158 LPIAMLACARIGAVHSVVFAGFSAESLAQRIVDCKPKVVITCNAVKRGPKTINLKDIVDAALDESAKNGVSVGICLTYEN  237 (666)
T ss_pred             HHHHHHHHHHcCCEEEecCCCCCHHHHHHHHHhcCceEEEEcCccccCCcccchHHHHHHHHHhccccCCCccEEEEecc
Confidence            99999999999999999999999999999999999999999876432110         000000   011112222221


Q ss_pred             CcHHHHHHHhhCCcceeeHHHHHhcCccCCccCCCCCCCceEEEEecCCCCCCCceeeecchhHHHHh-hhhhhhccccc
Q 006111          182 LTAEQKEMAVQTGIKPYSWDEFLHLGKVNEMEILPPQPFNICTIMYTSGTSGDPKGVVLTHETIATFV-SGVDLFLDQFE  260 (660)
Q Consensus       182 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~TSGTTG~pK~v~~th~~l~~~~-~~~~~~~~~~~  260 (660)
                      ..................|+++.... ....+.....++|+++|+|||||||.||||+++|.+++... ..+...+    
T Consensus       238 ~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~d~~~ilyTSGTTG~PKgVv~sh~~~~~~~~~~~~~~~----  312 (666)
T PLN02654        238 QLAMKREDTKWQEGRDVWWQDVVPNY-PTKCEVEWVDAEDPLFLLYTSGSTGKPKGVLHTTGGYMVYTATTFKYAF----  312 (666)
T ss_pred             cccccccccccccCCcccHHHHhhcC-CCCCCceecCCCCceEEEecCCCCCCCceEEecccHHHHHHHHHHHHhc----
Confidence            10000000000000122355554322 11122334578999999999999999999999999986543 3344444    


Q ss_pred             CCCCCCcEEEEecChhHHHHHHH-HHHHhhcCcEEEEecC-----ChhhHHHHhhhhcCeEEEechHHHHHHHHHHHHHH
Q 006111          261 DKMTVDDVYLSFLPLAHILDRVI-EEYFFRRGASVGYYHG-----DLNALRDDLMELKPTLLAGVPRVFEKIHEGIKKAL  334 (660)
Q Consensus       261 ~~~~~~~~~l~~~pl~~~~g~~~-~l~~l~~G~~~v~~~~-----~~~~~~~~i~~~~~t~~~~~p~~~~~l~~~~~~~~  334 (660)
                       ++.++|++++..|+.|.+++.. ++.+++.|++++++++     ++..+++.|+++++|+++++|++++.|.+..... 
T Consensus       313 -~~~~~d~~~~~~~~~~~~g~~~~~~~~L~~G~tvvl~~~~~~~~~~~~~~~~i~~~~vt~~~~~P~~~~~l~~~~~~~-  390 (666)
T PLN02654        313 -DYKPTDVYWCTADCGWITGHSYVTYGPMLNGATVLVFEGAPNYPDSGRCWDIVDKYKVTIFYTAPTLVRSLMRDGDEY-  390 (666)
T ss_pred             -CCCCCcEEEEcCCchhhhhhHHHHHHHHHcCceEEEECCCCCCCCHHHHHHHHHHhCCeEEEeCHHHHHHHHhhCccc-
Confidence             7889999999999999998765 6778999999999863     6899999999999999999999999886532110 


Q ss_pred             HhhchHHHHHHHHHHHHHHHHHhhCCCCCCcchhhhHHHHHHHHHHhCCcEeEEEEccCCCCHHHHHHHHHhcC---Cce
Q 006111          335 EELRPLRRRIFDALYKYKLAWMNMGYKQREASPLADLLAFRKVKARLGGRLRLVISGGAPLSTEVEEFLRVTCC---AFL  411 (660)
Q Consensus       335 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lr~i~~~G~~l~~~~~~~~~~~~~---~~v  411 (660)
                                                        ....++        ++||.++++|+++++++.+++.+.+|   +++
T Consensus       391 ----------------------------------~~~~~l--------~~Lr~i~~~Ge~l~~~~~~~~~~~~g~~~~~i  428 (666)
T PLN02654        391 ----------------------------------VTRHSR--------KSLRVLGSVGEPINPSAWRWFFNVVGDSRCPI  428 (666)
T ss_pred             ----------------------------------cccCCh--------hheeEEEEecCCCCHHHHHHHHHHhCCCCCce
Confidence                                              011122        48999999999999999999999887   789


Q ss_pred             eeecCCCCCCCceecccCCC-ccccCccCCCccCeeEEeeecCCCCCCCCCCCCCceEEEcc--CCcccccCCCchhhhh
Q 006111          412 VQGYGLTETCGPTTVCFPDE-MCMVGTAGPVSVYSELRLEEVPEMGYSPLDDPPCGEVCVRG--KTLFSGYYKNPDLTRE  488 (660)
Q Consensus       412 ~~~YG~tE~~~~~~~~~~~~-~~~~~~~G~~~~~~~v~ivd~~~~~~~~~~~~~~Gei~v~g--~~~~~gy~~~~~~~~~  488 (660)
                      .+.||+||+++......... ...++++|.|++|++++|+| +++..+  ..++.|||++++  |+++.|||++++.+..
T Consensus       429 ~~~yg~TE~g~~~~~~~~~~~~~~~gs~G~p~~g~~v~i~d-~~g~~~--~~~~~Gel~v~~~~p~~~~gy~~~~~~~~~  505 (666)
T PLN02654        429 SDTWWQTETGGFMITPLPGAWPQKPGSATFPFFGVQPVIVD-EKGKEI--EGECSGYLCVKKSWPGAFRTLYGDHERYET  505 (666)
T ss_pred             eccccccccCCeeeccCCCCCCCCCCccCCCCCCceEEEEC-CCCCCC--CCCCceEEEEcCCCchhhhhhcCChHHHHH
Confidence            99999999987766544322 34568999999999999999 776644  445689999999  7899999999988877


Q ss_pred             cc---cCCccccCceEEECCCCcEEEEeccCCeeEcCCCeeecchhHHHHHhcCcCcceEEEEecCCC---CeEEEEEEc
Q 006111          489 SI---IDGWFHTGDIGQILPNGVVKIIDRKKNLIKISQGEYVALEYLENVYCVAPIIEDIWVYGDSLK---SMLVAVVVP  562 (660)
Q Consensus       489 ~~---~~g~~~TGDl~~~~~~G~l~~~GR~~d~i~~~~G~~v~~~~iE~~l~~~p~V~~~~V~~~~~~---~~~~a~v~~  562 (660)
                      .+   .+|||+|||+|++|+||.++++||.||+|++ +|++|+|.|||++|.+||+|.+|+|++.+++   +.++|+|++
T Consensus       506 ~~~~~~~g~~~TGD~~~~d~dG~l~i~GR~dd~I~~-~G~ri~p~EIE~~l~~~p~V~eaaVvg~~d~~~ge~~~a~Vvl  584 (666)
T PLN02654        506 TYFKPFAGYYFSGDGCSRDKDGYYWLTGRVDDVINV-SGHRIGTAEVESALVSHPQCAEAAVVGIEHEVKGQGIYAFVTL  584 (666)
T ss_pred             hhhhcCCCEEEeCceEEECCCCcEEEeeeccCeEEe-CCEEECHHHHHHHHHhCCCeeeEEEEeeEcCCCCeEEEEEEEE
Confidence            65   3899999999999999999999999999997 7999999999999999999999999998765   489999999


Q ss_pred             ChhhHHHHHHHCCCCCcHHHHhccHHHHHHHHHHHHHHHHhCCCCCceeeeEEEEecCCCCCCCCccccccccchHHHHH
Q 006111          563 CEEDTKKWAYSNGHAGSFLELCSLVQLQNYILSELKNAAERNKLRGFEHIKGVILDPRPFDMERDLVTATLKKKRNKLLI  642 (660)
Q Consensus       563 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~l~~~~~p~~i~~~~~~~~~~~~P~t~~GKv~R~~l~~  642 (660)
                      +++..                 ..    ..+.++|+++++ ..|+.|++|+.|++++      .+|+|.+||++|+.|++
T Consensus       585 ~~~~~-----------------~~----~~l~~~l~~~~~-~~L~~~~~P~~i~~v~------~lP~T~sGKi~r~~l~~  636 (666)
T PLN02654        585 VEGVP-----------------YS----EELRKSLILTVR-NQIGAFAAPDKIHWAP------GLPKTRSGKIMRRILRK  636 (666)
T ss_pred             CCCCC-----------------CC----HHHHHHHHHHHH-HhCCCCcCCCEEEECC------CCCCCCCcCchHHHHHH
Confidence            87530                 11    234455666665 7899999999999874      45899999999999998


Q ss_pred             HHHH
Q 006111          643 YYQV  646 (660)
Q Consensus       643 ~~~~  646 (660)
                      .+.+
T Consensus       637 ~~~~  640 (666)
T PLN02654        637 IASR  640 (666)
T ss_pred             HHcC
Confidence            8754

>TIGR02316 propion_prpE propionate--CoA ligase

Probab=100.00  E-value=1.2e-66  Score=584.74  Aligned_cols=526  Identities=16%  Similarity=0.144  Sum_probs=406.3

Q ss_pred             CCCCcHHHHHHHHHHhCCCCCceeeeccccCCCCCceEEeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEeCCchhHHHHH
Q 006111           39 SDLNTAWDIFSMSVQKYPGNRMLGWRPFVDGKFGPYVWKTYKEVYEEVLQIVSALRASGAEPGCRVGIYGANCPQWVEAM  118 (660)
Q Consensus        39 ~~~~ti~~~l~~~a~~~pd~~a~~~~~~~d~~~~~~~~~Ty~ql~~~v~~lA~~L~~~Gl~~gd~V~l~~~n~~e~~~~~  118 (660)
                      ...|.+.++|+++++.+|+++|+++.   +...+..+++||+||.+++.++|++|++.|+++||+|+++++|++++++++
T Consensus        49 ~~~n~~~~~l~~~~~~~p~~~Al~~~---~~~~~~~~~~Ty~eL~~~v~~lA~~L~~~Gv~~Gd~V~i~~~n~~e~v~~~  125 (628)
T TIGR02316        49 GRTNLCHNALDRHLDERGEQLALVTV---SSETGQERTLTYRQLHREVNVFASALRALGVGRGDRVLIYMPMIAEAVFAM  125 (628)
T ss_pred             CEeeHHHHHHHHHhCcCCCCeEEEEE---cCCCCceEEEeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEcCCCHHHHHHH
Confidence            44566788999888899999999885   333344578999999999999999999999999999999999999999999


Q ss_pred             HHHHhCCCeEEecCCCCChhHHHHHHhcccceEEEEccchhh---------hhhccccccccCccEEEEecCCcHHHHHH
Q 006111          119 EACNALSLICVPLYDTLGPGAVNFILDHAEIDFVFVQDKKVK---------ELLSPDCRSAQRLRVMVCFTSLTAEQKEM  189 (660)
Q Consensus       119 lA~~~~G~~~vpl~~~~~~~~l~~~l~~~~~~~ii~~~~~~~---------~~~~~~~~~~~~~~~i~~~~~~~~~~~~~  189 (660)
                      |||+++|++++|+++.++.+++..+|+.++++++|+++....         .+.............++.++......   
T Consensus       126 lA~~~~Gav~vpl~~~~~~~~l~~~l~~~~~~~li~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vi~~~~~~~~~---  202 (628)
T TIGR02316       126 LACARIGAIHSVVFGGFASHSLALRIDDATPKLIVSADAGMRGGKVIPYKPLLDAAIAEAQHPPPHVLLVDRGLAPM---  202 (628)
T ss_pred             HHHHHhCCEEEecCCCCCHHHHHHHHHhcCceEEEECCccccCCcccccHHHHHHHHHhcCCCCCEEEEEeCCCCCc---
Confidence            999999999999999999999999999999999999865321         11111111112234455554321000   


Q ss_pred             HhhCCcceeeHHHHHhcCccCCccCCCCCCCceEEEEecCCCCCCCceeeecchhHHHHh-hhhhhhcccccCCCCCCcE
Q 006111          190 AVQTGIKPYSWDEFLHLGKVNEMEILPPQPFNICTIMYTSGTSGDPKGVVLTHETIATFV-SGVDLFLDQFEDKMTVDDV  268 (660)
Q Consensus       190 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~TSGTTG~pK~v~~th~~l~~~~-~~~~~~~~~~~~~~~~~~~  268 (660)
                       ........+|.++.........+.....++++++|+|||||||.||||+++|.+++... ......+     ++..+|+
T Consensus       203 -~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~ilyTSGTTG~PKgV~~sh~~~~~~~~~~~~~~~-----~~~~~d~  276 (628)
T TIGR02316       203 -RLIPGRDVDYAALRTQHEDAQVPVEWLESNEPSYILYTSGTTGKPKGVQRDVGGYAVALALSMWAIF-----GIRAGQV  276 (628)
T ss_pred             -CcccCccccHHHHhhccccCCCCceecCCCCcEEEEECCCCCCCCceEEECCcHHHHHHHHHHHHhc-----CCCCCcE
Confidence             00001123455555432211222233567999999999999999999999999986443 3333444     7788999


Q ss_pred             EEEecChhHHHHHHH-HHHHhhcCcEEEEecC-----ChhhHHHHhhhhcCeEEEechHHHHHHHHHHHHHHHhhchHHH
Q 006111          269 YLSFLPLAHILDRVI-EEYFFRRGASVGYYHG-----DLNALRDDLMELKPTLLAGVPRVFEKIHEGIKKALEELRPLRR  342 (660)
Q Consensus       269 ~l~~~pl~~~~g~~~-~l~~l~~G~~~v~~~~-----~~~~~~~~i~~~~~t~~~~~p~~~~~l~~~~~~~~~~~~~~~~  342 (660)
                      +++..|+.|..++.. ++.+++.|+++++.++     ++..+++.|+++++|+++++|++++.|.+.....         
T Consensus       277 ~~~~~~~~~~~g~~~~~~~~L~~G~~~v~~~~~~~~~~~~~~~~~i~~~~vt~~~~~P~~~~~l~~~~~~~---------  347 (628)
T TIGR02316       277 MFSASDVGWVVGHSYIVYAPLLAGAATVLYEGLPTNPDPGVWWSIVERYGVRTMFSAPTAIRVLKKQDAAW---------  347 (628)
T ss_pred             EEEcCCCCeeehhhHHHHHHHhccceEEEeCCCCCCCCHHHHHHHHHHhCCeEEEeCHHHHHHHHhcCCcc---------
Confidence            999999999988754 6778999999999863     6889999999999999999999998875421100         


Q ss_pred             HHHHHHHHHHHHHHhhCCCCCCcchhhhHHHHHHHHHHhCCcEeEEEEccCCCCHHHHHHHHHhcCCceeeecCCCCCCC
Q 006111          343 RIFDALYKYKLAWMNMGYKQREASPLADLLAFRKVKARLGGRLRLVISGGAPLSTEVEEFLRVTCCAFLVQGYGLTETCG  422 (660)
Q Consensus       343 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lr~i~~~G~~l~~~~~~~~~~~~~~~v~~~YG~tE~~~  422 (660)
                                                ....++        ++||.+++||+++++++.+++.+.+|.++++.||+||++.
T Consensus       348 --------------------------~~~~~l--------~~lr~~~~gGe~l~~~~~~~~~~~~~~~~~~~yG~TE~~~  393 (628)
T TIGR02316       348 --------------------------LRKHDL--------SSLHWLFLAGEPLDEPTAHWITDGLGKPVIDNYWQTETGW  393 (628)
T ss_pred             --------------------------cccCCc--------cceeEEEEecCCCCHHHHHHHHHHhCCCEEecccccccCc
Confidence                                      011111        4999999999999999999999989999999999999986


Q ss_pred             ceecccCC---CccccCccCCCccCeeEEeeecC-CCCCCCCCCCCCceEEEccC---CcccccCCCchhhhhcc----c
Q 006111          423 PTTVCFPD---EMCMVGTAGPVSVYSELRLEEVP-EMGYSPLDDPPCGEVCVRGK---TLFSGYYKNPDLTRESI----I  491 (660)
Q Consensus       423 ~~~~~~~~---~~~~~~~~G~~~~~~~v~ivd~~-~~~~~~~~~~~~Gei~v~g~---~~~~gy~~~~~~~~~~~----~  491 (660)
                      .++....+   .....+++|.|+++++++|+| + ++.  +++.++.|||+++||   +.+.||++++..+.+.+    .
T Consensus       394 ~~~~~~~~~~~~~~~~gs~G~p~~g~~v~i~d-~~~g~--~~~~g~~Gel~v~gp~~~g~~~~~~~~~~~~~~~~~~~~~  470 (628)
T TIGR02316       394 PVLAIMPGLDLKPVKLGSPGLPMYGYHLRVLD-EATGR--PCGPNEKGVLTVVPPLPPGCLSTVWGDDARFLKTYWSHFK  470 (628)
T ss_pred             eeecCCCCCCcCCCCCCCcccCcCCceEEEEE-CCCCC--CCCCCCcEEEEEecCCCccccccccCChHHHHHhhhhcCC
Confidence            54433322   123347899999999999999 5 444  345568999999998   56789999987766543    5


Q ss_pred             CCccccCceEEECCCCcEEEEeccCCeeEcCCCeeecchhHHHHHhcCcCcceEEEEecCCC---CeEEEEEEcChhhHH
Q 006111          492 DGWFHTGDIGQILPNGVVKIIDRKKNLIKISQGEYVALEYLENVYCVAPIIEDIWVYGDSLK---SMLVAVVVPCEEDTK  568 (660)
Q Consensus       492 ~g~~~TGDl~~~~~~G~l~~~GR~~d~i~~~~G~~v~~~~iE~~l~~~p~V~~~~V~~~~~~---~~~~a~v~~~~~~~~  568 (660)
                      ++||+|||+|++|+||.++++||.||+||+ +|++|+|.|||++|.+||+|.||+|++.+++   +.++++|+++++.. 
T Consensus       471 ~~~~~TGD~g~~d~dG~l~i~GR~dd~ik~-~G~rv~~~eIE~~l~~~p~V~ea~Vvg~~d~~~g~~~~~~vv~~~~~~-  548 (628)
T TIGR02316       471 RPLYSSFDWGIRDEDGYTFILGRTDDVINV-AGHRLGTREIEESVSSHPSVAEVAVVGVHDELKGQVAVVFAILKESDS-  548 (628)
T ss_pred             CCEEECCceEEEcCCCcEEEEEcCcceEEe-CCEEeCHHHHHHHHHhCCCcceEEEEeeecCCCCeEEEEEEEEcCCcc-
Confidence            779999999999999999999999999997 7999999999999999999999999998765   48899998876420 


Q ss_pred             HHHHHCCCCCcHHHHhccHHHHHHHHHHHHHHHHhCCCCCceeeeEEEEecCCCCCCCCccccccccchHHHHHHHHH
Q 006111          569 KWAYSNGHAGSFLELCSLVQLQNYILSELKNAAERNKLRGFEHIKGVILDPRPFDMERDLVTATLKKKRNKLLIYYQV  646 (660)
Q Consensus       569 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~l~~~~~p~~i~~~~~~~~~~~~P~t~~GKv~R~~l~~~~~~  646 (660)
                             .        .+......+.++|+++++ .+|+.|++|+.|++++      .+|+|++||++|+.|++.++.
T Consensus       549 -------~--------~~~~~~~~~~~~i~~~~~-~~L~~~~~P~~v~~v~------~lP~t~sGKi~r~~L~~~~~~  604 (628)
T TIGR02316       549 -------A--------GDAHDPHAVETGMMDCVV-RQLGAVARPARVYFVA------ALPKTRSGKLLRRSIQALAEG  604 (628)
T ss_pred             -------c--------ccccchHHHHHHHHHHHH-HhcCCCcCCCEEEEcC------CCCCCCchHHHHHHHHHHHcC
Confidence                   0        000011234456666665 7899999999999874      458999999999999987643

This family contains one of three readily separable clades of proteins in the group of acetate and propionate--CoA ligases. Characterized members of this family act on propionate. From propionyl-CoA, there is a cyclic degradation pathway: it is ligated by PrpC to the TCA cycle intermediate oxaloacetate, acted upon further by PrpD and an aconitase, then cleaved by PrpB to pyruvate and the TCA cycle intermediate succinate.

>PRK06334 long chain fatty acid--[acyl-carrier-protein] ligase; Validated

Probab=100.00  E-value=1.9e-66  Score=572.38  Aligned_cols=496  Identities=21%  Similarity=0.190  Sum_probs=389.7

Q ss_pred             CCcHHHHHHHHHHhCCCCCceeeeccccCCCCCceEEeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEeCCchhHHHHHHH
Q 006111           41 LNTAWDIFSMSVQKYPGNRMLGWRPFVDGKFGPYVWKTYKEVYEEVLQIVSALRASGAEPGCRVGIYGANCPQWVEAMEA  120 (660)
Q Consensus        41 ~~ti~~~l~~~a~~~pd~~a~~~~~~~d~~~~~~~~~Ty~ql~~~v~~lA~~L~~~Gl~~gd~V~l~~~n~~e~~~~~lA  120 (660)
                      .+++.+.|.+.++++|+++|+.+.   +.     +++||+||.++++++|..|.+   .+||+|+++++|++++++++||
T Consensus        18 ~~~~~~~~~~~~~~~p~~~a~~~~---~~-----~~~Ty~el~~~~~~lA~~L~~---~~gd~Val~~~n~~e~~~~~lA   86 (539)
T PRK06334         18 GKTVLESFLKLCSEMTTATVCWDE---QL-----GKLSYNQVRKAVIALATKVSK---YPDQHIGIMMPASAGAYIAYFA   86 (539)
T ss_pred             CCcHHHHHHHHHHhCCCceEEEeC---CC-----CcccHHHHHHHHHHHHHHHhh---ccCCeEEEEcCCchHHHHHHHH
Confidence            378999999999999999998754   32     479999999999999999987   3899999999999999999999


Q ss_pred             HHhCCCeEEecCCCCChhHHHHHHhcccceEEEEccchhhhhhccccccccCccEEEEecCCcHHHHHHHhhCCcceeeH
Q 006111          121 CNALSLICVPLYDTLGPGAVNFILDHAEIDFVFVQDKKVKELLSPDCRSAQRLRVMVCFTSLTAEQKEMAVQTGIKPYSW  200 (660)
Q Consensus       121 ~~~~G~~~vpl~~~~~~~~l~~~l~~~~~~~ii~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~  200 (660)
                      |+++|++++|+++.++.+++..+|+.++++++|++......+.+...........++..++....            ..+
T Consensus        87 ~~~~G~v~vpl~~~~~~~~l~~~l~~~~~~~ii~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~------------~~~  154 (539)
T PRK06334         87 TLLSGKIPVMINWSQGLREVTACANLVGVTHVLTSKQLMQHLAQTHGEDAEYPFSLIYMEEVRKE------------LSF  154 (539)
T ss_pred             HHhcCCeeEecCcccchHHHHHHHHHcCCCEEEehHHHHHHHhhhhhccccccccEEEEehhhhh------------ccH
Confidence            99999999999999999999999999999999998776554432111000001123333321100            000


Q ss_pred             HHHHhcC-----cc----CCccCCCCCCCceEEEEecCCCCCCCceeeecchhHHHHhhhhhhhcccccCCCCCCcEEEE
Q 006111          201 DEFLHLG-----KV----NEMEILPPQPFNICTIMYTSGTSGDPKGVVLTHETIATFVSGVDLFLDQFEDKMTVDDVYLS  271 (660)
Q Consensus       201 ~~~~~~~-----~~----~~~~~~~~~~~~~~~i~~TSGTTG~pK~v~~th~~l~~~~~~~~~~~~~~~~~~~~~~~~l~  271 (660)
                      .+.....     ..    .........++++++|+|||||||.||+|.+||+++..........+     ++..+|++++
T Consensus       155 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~a~i~~TSGTTG~PKgV~~th~~l~~~~~~~~~~~-----~~~~~d~~l~  229 (539)
T PRK06334        155 WEKCRIGIYMSIPFEWLMRWFGVSDKDPEDVAVILFTSGTEKLPKGVPLTHANLLANQRACLKFF-----SPKEDDVMMS  229 (539)
T ss_pred             HHhhhhhhhhcCCchhhhhcccCCCCCcCCEEEEEECCCCCCCCCEEEEcHHHHHHHHHHHHHhc-----CCCCCceEEE
Confidence            0000000     00    00012235679999999999999999999999999998877665555     6788999999


Q ss_pred             ecChhHHHHHHH-HHHHhhcCcEEEEecC--ChhhHHHHhhhhcCeEEEechHHHHHHHHHHHHHHHhhchHHHHHHHHH
Q 006111          272 FLPLAHILDRVI-EEYFFRRGASVGYYHG--DLNALRDDLMELKPTLLAGVPRVFEKIHEGIKKALEELRPLRRRIFDAL  348 (660)
Q Consensus       272 ~~pl~~~~g~~~-~l~~l~~G~~~v~~~~--~~~~~~~~i~~~~~t~~~~~p~~~~~l~~~~~~~~~~~~~~~~~~~~~~  348 (660)
                      ++|++|.+++.. .+.++..|+++++...  ++..+++.|+++++|+++++|++++.|++......              
T Consensus       230 ~~p~~h~~g~~~~~~~~l~~G~~vv~~~~~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~--------------  295 (539)
T PRK06334        230 FLPPFHAYGFNSCTLFPLLSGVPVVFAYNPLYPKKIVEMIDEAKVTFLGSTPVFFDYILKTAKKQE--------------  295 (539)
T ss_pred             ecchHhhhhhHHHHHHHHHcCCeEEEecCCCCHHHHHHHHHHhCCcEEEecHHHHHHHHHhhhhcc--------------
Confidence            999999999875 5777999999988753  89999999999999999999999999876432110              


Q ss_pred             HHHHHHHHhhCCCCCCcchhhhHHHHHHHHHHhCCcEeEEEEccCCCCHHHHHHHHHhc-CCceeeecCCCCCCCceecc
Q 006111          349 YKYKLAWMNMGYKQREASPLADLLAFRKVKARLGGRLRLVISGGAPLSTEVEEFLRVTC-CAFLVQGYGLTETCGPTTVC  427 (660)
Q Consensus       349 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lr~i~~~G~~l~~~~~~~~~~~~-~~~v~~~YG~tE~~~~~~~~  427 (660)
                                                     ...++||.+++||+++++++.+++.+.+ ++.+++.||+||++.+++..
T Consensus       296 -------------------------------~~~~~lr~i~~gG~~l~~~~~~~~~~~~~~~~i~~~YG~TE~~~~~~~~  344 (539)
T PRK06334        296 -------------------------------SCLPSLRFVVIGGDAFKDSLYQEALKTFPHIQLRQGYGTTECSPVITIN  344 (539)
T ss_pred             -------------------------------cccccccEEEECCccCCHHHHHHHHHHCCCCeEEecccccccCceEEec
Confidence                                           0114899999999999999999999888 68999999999999877665


Q ss_pred             cCCCccccCccCCCccCeeEEeeecCCCCCCCCCCCCCceEEEccCCcccccCCCchhhhhcc--cCCccccCceEEECC
Q 006111          428 FPDEMCMVGTAGPVSVYSELRLEEVPEMGYSPLDDPPCGEVCVRGKTLFSGYYKNPDLTRESI--IDGWFHTGDIGQILP  505 (660)
Q Consensus       428 ~~~~~~~~~~~G~~~~~~~v~ivd~~~~~~~~~~~~~~Gei~v~g~~~~~gy~~~~~~~~~~~--~~g~~~TGDl~~~~~  505 (660)
                      ........+++|+|+++++++|+| ++++ .+++.|+.|||+|+|++++.||+++++.+....  .+|||+|||+|++|+
T Consensus       345 ~~~~~~~~~~vG~p~~g~~v~i~d-~~~~-~~~~~g~~Gel~v~g~~~~~GY~~~~~~~~~~~~~~~~w~~TGD~g~~d~  422 (539)
T PRK06334        345 TVNSPKHESCVGMPIRGMDVLIVS-EETK-VPVSSGETGLVLTRGTSLFSGYLGEDFGQGFVELGGETWYVTGDLGYVDR  422 (539)
T ss_pred             cCCCCCCCCcCceecCCCEEEEEc-CCCC-ccCCCCceEEEEEecCcccccccCCcccccceeeCCceeEECCCEEEECC
Confidence            444333446899999999999998 5433 455667899999999999999999987654322  367999999999999


Q ss_pred             CCcEEEEeccCCeeEcCCCeeecchhHHHHHhcCcCcce------EEEEecCCCC-eEEEEEEcChhhHHHHHHHCCCCC
Q 006111          506 NGVVKIIDRKKNLIKISQGEYVALEYLENVYCVAPIIED------IWVYGDSLKS-MLVAVVVPCEEDTKKWAYSNGHAG  578 (660)
Q Consensus       506 ~G~l~~~GR~~d~i~~~~G~~v~~~~iE~~l~~~p~V~~------~~V~~~~~~~-~~~a~v~~~~~~~~~~~~~~~~~~  578 (660)
                      +|.+++.||.+|+||+ +|++|+|.|||++|.+||+|.+      ++|++.++.. .++++++...              
T Consensus       423 ~G~l~~~GR~~d~ik~-~G~~v~p~eIE~~l~~~~~v~~~~~~~~~~v~~~~~~~~~~~~~~~~~~--------------  487 (539)
T PRK06334        423 HGELFLKGRLSRFVKI-GAEMVSLEALESILMEGFGQNAADHAGPLVVCGLPGEKVRLCLFTTFPT--------------  487 (539)
T ss_pred             CCeEEEEeccCCeEEE-CCEEECHHHHHHHHHHccCCccccccCceEEEcCCCCceEEEEEEeccC--------------
Confidence            9999999999999997 8999999999999999999998      7888887554 4445554321              


Q ss_pred             cHHHHhccHHHHHHHHHHHHHHHHhCCCCCceeeeEEEEecCCCCCCCCccccccccchHHHHHHHHH
Q 006111          579 SFLELCSLVQLQNYILSELKNAAERNKLRGFEHIKGVILDPRPFDMERDLVTATLKKKRNKLLIYYQV  646 (660)
Q Consensus       579 ~~~~~~~~~~~~~~~~~~l~~~~~~~~l~~~~~p~~i~~~~~~~~~~~~P~t~~GKv~R~~l~~~~~~  646 (660)
                            +        .+++++++++..++.|+.|+.+.+++      .+|+|++||++|++|++....
T Consensus       488 ------~--------~~~~~~~l~~~~~~~~~~P~~i~~v~------~lP~t~~GKi~r~~L~~~~~~  535 (539)
T PRK06334        488 ------S--------ISEVNDILKNSKTSSILKISYHHQVE------SIPMLGTGKPDYCSLNALAKS  535 (539)
T ss_pred             ------C--------hHHHHHHHHhcCCcccccchheeeec------ccccccCCcccHHHHHHHHHH
Confidence                  1        12344444434578999999988864      468999999999999987554

>TIGR02188 Ac_CoA_lig_AcsA acetate--CoA ligase

Probab=100.00  E-value=2.4e-66  Score=583.01  Aligned_cols=520  Identities=17%  Similarity=0.198  Sum_probs=411.3

Q ss_pred             CCCCcHHHHHHHHHHhCCCCCceeeeccccCCCCCceEEeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEeCCchhHHHHH
Q 006111           39 SDLNTAWDIFSMSVQKYPGNRMLGWRPFVDGKFGPYVWKTYKEVYEEVLQIVSALRASGAEPGCRVGIYGANCPQWVEAM  118 (660)
Q Consensus        39 ~~~~ti~~~l~~~a~~~pd~~a~~~~~~~d~~~~~~~~~Ty~ql~~~v~~lA~~L~~~Gl~~gd~V~l~~~n~~e~~~~~  118 (660)
                      ...|...++|+++++++|+++|+++.   +...+..+++||+||.+++.++|++|++.|+++||+|+++++|++++++++
T Consensus        54 ~~~n~~~~~l~~~~~~~p~~~Al~~~---~~~~~~~~~~Ty~eL~~~v~~lA~~L~~~Gv~~gd~V~i~~~n~~e~~~~~  130 (625)
T TIGR02188        54 GELNVSYNCVDRHLEARPDKVAIIWE---GDEPGEVRKITYRELHREVCRFANVLKSLGVKKGDRVAIYMPMIPEAAIAM  130 (625)
T ss_pred             CEEEHHHHHHHHhhccCCCCeEEEEE---cCCCCceEEEEHHHHHHHHHHHHHHHHHcCCCCCCEEEEECCCCHHHHHHH
Confidence            34567788888889999999999986   433455679999999999999999999999999999999999999999999


Q ss_pred             HHHHhCCCeEEecCCCCChhHHHHHHhcccceEEEEccchhh---------hhhcccccccc-CccEEEEecCCcHHHHH
Q 006111          119 EACNALSLICVPLYDTLGPGAVNFILDHAEIDFVFVQDKKVK---------ELLSPDCRSAQ-RLRVMVCFTSLTAEQKE  188 (660)
Q Consensus       119 lA~~~~G~~~vpl~~~~~~~~l~~~l~~~~~~~ii~~~~~~~---------~~~~~~~~~~~-~~~~i~~~~~~~~~~~~  188 (660)
                      |||+++|++++|+++.++.+++..+++.++++++|+++....         .+.+.. ...+ .+..++.++...... .
T Consensus       131 lA~~~~Gav~v~i~~~~~~~~l~~~l~~~~~~~li~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~-~  208 (625)
T TIGR02188       131 LACARIGAIHSVVFGGFSAEALADRINDAGAKLVITADEGLRGGKVIPLKAIVDEAL-EKCPVSVEHVLVVRRTGNPV-P  208 (625)
T ss_pred             HHHHHhCCEEeccCCCCCHHHHHHHHHhcCCCEEEEcCccccCCcccchHHHHHHHH-HhCCCCccEEEEEcCCCCCc-C
Confidence            999999999999999999999999999999999999875321         111111 1112 344455544321100 0


Q ss_pred             HHhhCCcceeeHHHHHhcCccCCccCCCCCCCceEEEEecCCCCCCCceeeecchhHHHHhhh-hhhhcccccCCCCCCc
Q 006111          189 MAVQTGIKPYSWDEFLHLGKVNEMEILPPQPFNICTIMYTSGTSGDPKGVVLTHETIATFVSG-VDLFLDQFEDKMTVDD  267 (660)
Q Consensus       189 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~TSGTTG~pK~v~~th~~l~~~~~~-~~~~~~~~~~~~~~~~  267 (660)
                         ........|.++.... ..........++++++|+|||||||.||+|+++|.+++..... ....+     ++..+|
T Consensus       209 ---~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~a~il~TSGTTG~PKgV~~s~~~~~~~~~~~~~~~~-----~~~~~d  279 (625)
T TIGR02188       209 ---WVEGRDVWWHDLMAKA-SAYCEPEPMDSEDPLFILYTSGSTGKPKGVLHTTGGYLLYAAMTMKYVF-----DIKDGD  279 (625)
T ss_pred             ---ccccccccHHHHHhhc-CCCCCceecCCCCceEEEecCCCCCCCCeEEECccHhHHHHHHHHHhcc-----CCCCCc
Confidence               0001123455555432 1222333457789999999999999999999999998755433 22233     678899


Q ss_pred             EEEEecChhHHHHHHH-HHHHhhcCcEEEEecC-----ChhhHHHHhhhhcCeEEEechHHHHHHHHHHHHHHHhhchHH
Q 006111          268 VYLSFLPLAHILDRVI-EEYFFRRGASVGYYHG-----DLNALRDDLMELKPTLLAGVPRVFEKIHEGIKKALEELRPLR  341 (660)
Q Consensus       268 ~~l~~~pl~~~~g~~~-~l~~l~~G~~~v~~~~-----~~~~~~~~i~~~~~t~~~~~p~~~~~l~~~~~~~~~~~~~~~  341 (660)
                      ++++..|++|..+... ++.++..|+++++.++     ++..+++.|+++++|+++++|++++.|.+.....        
T Consensus       280 ~~~~~~~~~~~~g~~~~~~~~l~~G~t~vl~~~~~~~~~~~~~~~~i~~~~vt~~~~~P~~~~~l~~~~~~~--------  351 (625)
T TIGR02188       280 IFWCTADVGWITGHSYIVYGPLANGATTVMFEGTPTYPDPGRFWEIIEKHKVTIFYTAPTAIRALMRLGDEW--------  351 (625)
T ss_pred             EEEECCCchhhhccHHHHHHHHHcCCeEEEECCCCCCCChhHHHHHHHHhCCeEEEeCHHHHHHHHhcCCcc--------
Confidence            9999999999988764 6778999999999853     6899999999999999999999999886532110        


Q ss_pred             HHHHHHHHHHHHHHHhhCCCCCCcchhhhHHHHHHHHHHhCCcEeEEEEccCCCCHHHHHHHHHhcC---CceeeecCCC
Q 006111          342 RRIFDALYKYKLAWMNMGYKQREASPLADLLAFRKVKARLGGRLRLVISGGAPLSTEVEEFLRVTCC---AFLVQGYGLT  418 (660)
Q Consensus       342 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lr~i~~~G~~l~~~~~~~~~~~~~---~~v~~~YG~t  418 (660)
                                                 .+..+        +++||.++++|+++++++.+++.+.++   +++++.||+|
T Consensus       352 ---------------------------~~~~~--------l~~lr~i~~~G~~l~~~~~~~~~~~~~~~~~~i~~~yG~T  396 (625)
T TIGR02188       352 ---------------------------VKKHD--------LSSLRLLGSVGEPINPEAWMWYYKVVGKERCPIVDTWWQT  396 (625)
T ss_pred             ---------------------------cccCC--------ccceeEEEEecCCCCHHHHHHHHHHcCCCCCceEeccccc
Confidence                                       01111        148999999999999999999998875   7899999999


Q ss_pred             CCCCceecccCC-CccccCccCCCccCeeEEeeecCCCCCCCCCCCCCceEEEcc--CCcccccCCCchhhhhcc---cC
Q 006111          419 ETCGPTTVCFPD-EMCMVGTAGPVSVYSELRLEEVPEMGYSPLDDPPCGEVCVRG--KTLFSGYYKNPDLTRESI---ID  492 (660)
Q Consensus       419 E~~~~~~~~~~~-~~~~~~~~G~~~~~~~v~ivd~~~~~~~~~~~~~~Gei~v~g--~~~~~gy~~~~~~~~~~~---~~  492 (660)
                      |+++.++..... ....++++|+|++|++++|+| +++..++ +.++.|||+|+|  |+++.|||++++.+...+   .+
T Consensus       397 E~~~~~~~~~~~~~~~~~~~~G~p~~g~~~~i~d-~~g~~~~-~~g~~GeL~v~~p~p~~~~gy~~~~~~~~~~~~~~~~  474 (625)
T TIGR02188       397 ETGGIMITPLPGATPTKPGSATLPFFGIEPAVVD-EEGNPVE-GPGEGGYLVIKQPWPGMLRTIYGDHERFVDTYFSPFP  474 (625)
T ss_pred             ccCCceeecCCCCCCcCCCcccCCcCCceEEEEC-CCCCCCC-CCCCeEEEEEccCCCcccccccCChHHHHHHHhccCC
Confidence            999876654333 233458999999999999999 7766443 256899999999  689999999998777765   48


Q ss_pred             CccccCceEEECCCCcEEEEeccCCeeEcCCCeeecchhHHHHHhcCcCcceEEEEecCCC---CeEEEEEEcChhhHHH
Q 006111          493 GWFHTGDIGQILPNGVVKIIDRKKNLIKISQGEYVALEYLENVYCVAPIIEDIWVYGDSLK---SMLVAVVVPCEEDTKK  569 (660)
Q Consensus       493 g~~~TGDl~~~~~~G~l~~~GR~~d~i~~~~G~~v~~~~iE~~l~~~p~V~~~~V~~~~~~---~~~~a~v~~~~~~~~~  569 (660)
                      |||+|||+|++|++|.++++||.||+|++ +|++|+|.+||++|.+||+|.||+|++.+++   +.++|+|++.++..  
T Consensus       475 g~~~TGDl~~~d~dG~l~i~GR~dd~i~~-~G~ri~p~eIE~~l~~~p~V~e~~vvg~~~~~~g~~~~a~vv~~~~~~--  551 (625)
T TIGR02188       475 GYYFTGDGARRDKDGYIWITGRVDDVINV-SGHRLGTAEIESALVSHPAVAEAAVVGIPDDIKGQAIYAFVTLKDGYE--  551 (625)
T ss_pred             CEEECCceEEEcCCCcEEEEecccCEEEe-CCEEECHHHHHHHHHhCCCcceEEEEeeEcCCCCeEEEEEEEeCCCCC--
Confidence            99999999999999999999999999997 7999999999999999999999999997654   48899999887531  


Q ss_pred             HHHHCCCCCcHHHHhccHHHHHHHHHHHHHHHHhCCCCCceeeeEEEEecCCCCCCCCccccccccchHHHHHHHHH
Q 006111          570 WAYSNGHAGSFLELCSLVQLQNYILSELKNAAERNKLRGFEHIKGVILDPRPFDMERDLVTATLKKKRNKLLIYYQV  646 (660)
Q Consensus       570 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~l~~~~~p~~i~~~~~~~~~~~~P~t~~GKv~R~~l~~~~~~  646 (660)
                                     ...    .+.++|+++++ ..|+.+++|+.|+++      +.+|+|++||++|+.|++.+..
T Consensus       552 ---------------~~~----~~~~~l~~~~~-~~l~~~~~P~~i~~v------~~lP~t~sGKi~r~~l~~~~~~  602 (625)
T TIGR02188       552 ---------------PDD----ELRKELRKHVR-KEIGPIAKPDKIRFV------PGLPKTRSGKIMRRLLRKIAAG  602 (625)
T ss_pred             ---------------CCH----HHHHHHHHHHH-hhcCCCccCcEEEEC------CCCCCCCCccchHHHHHHHHcC
Confidence                           111    23455666665 689999999999987      4468999999999999988754

This model describes acetate-CoA ligase (EC 6.2.1.1), also called acetyl-CoA synthetase and acetyl-activating enzyme. It catalyzes the reaction ATP + acetate + CoA = AMP + diphosphate + acetyl-CoA and belongs to the family of AMP-binding enzymes described by Pfam model pfam00501.

>PRK07788 acyl-CoA synthetase; Validated

Probab=100.00  E-value=2.1e-66  Score=575.49  Aligned_cols=496  Identities=20%  Similarity=0.188  Sum_probs=403.7

Q ss_pred             CcHHHHHHHHHHhCCCCCceeeeccccCCCCCceEEeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEeCCchhHHHHHHHH
Q 006111           42 NTAWDIFSMSVQKYPGNRMLGWRPFVDGKFGPYVWKTYKEVYEEVLQIVSALRASGAEPGCRVGIYGANCPQWVEAMEAC  121 (660)
Q Consensus        42 ~ti~~~l~~~a~~~pd~~a~~~~~~~d~~~~~~~~~Ty~ql~~~v~~lA~~L~~~Gl~~gd~V~l~~~n~~e~~~~~lA~  121 (660)
                      .++.++|++.++++||++|+++.   +      +++||+||.++++++|++|.+.|+++||+|+++++|++++++++|||
T Consensus        49 ~~~~~~~~~~a~~~pd~~Al~~~---~------~~~Ty~el~~~~~~la~~L~~~gi~~gd~V~i~~~n~~~~~~~~la~  119 (549)
T PRK07788         49 GPFAGLVAHAARRAPDRAALIDE---R------GTLTYAELDEQSNALARGLLALGVRAGDGVAVLARNHRGFVLALYAA  119 (549)
T ss_pred             chHHHHHHHHHHHCCCceEEEEC---C------CceeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEcCCCHHHHHHHHHH
Confidence            48999999999999999999865   3      47999999999999999999999999999999999999999999999


Q ss_pred             HhCCCeEEecCCCCChhHHHHHHhcccceEEEEccchhhhhhccccccccCccEEEEecCCcHHHHHHHhhCCcceeeHH
Q 006111          122 NALSLICVPLYDTLGPGAVNFILDHAEIDFVFVQDKKVKELLSPDCRSAQRLRVMVCFTSLTAEQKEMAVQTGIKPYSWD  201 (660)
Q Consensus       122 ~~~G~~~vpl~~~~~~~~l~~~l~~~~~~~ii~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~  201 (660)
                      +++|++++|+++.++.+++..+++.++++++|++.+....+... ......+..+........       .......+++
T Consensus       120 ~~~G~~~v~l~~~~~~~~l~~~l~~~~~~~ii~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~-------~~~~~~~~~~  191 (549)
T PRK07788        120 GKVGARIILLNTGFSGPQLAEVAAREGVKALVYDDEFTDLLSAL-PPDLGRLRAWGGNPDDDE-------PSGSTDETLD  191 (549)
T ss_pred             HhcCCEEEEeCCCCCHHHHHHHHHhcCCcEEEECchhHHHHHhh-ccccccceEEEEecCccc-------cCCcCcccHH
Confidence            99999999999999999999999999999999998766554332 112222222222111100       0112344666


Q ss_pred             HHHhcCccCCccCCCCCCCceEEEEecCCCCCCCceeeecchhHHHHhhhhhhhcccccCCCCCCcEEEEecChhHHHHH
Q 006111          202 EFLHLGKVNEMEILPPQPFNICTIMYTSGTSGDPKGVVLTHETIATFVSGVDLFLDQFEDKMTVDDVYLSFLPLAHILDR  281 (660)
Q Consensus       202 ~~~~~~~~~~~~~~~~~~~~~~~i~~TSGTTG~pK~v~~th~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~pl~~~~g~  281 (660)
                      ++......   ...+...+++++++|||||||.||+|.++|+++...+......+     ++..+++++..+|++|.+|+
T Consensus       192 ~~~~~~~~---~~~~~~~~~~~~i~~TSGTTG~PKgv~~s~~~~~~~~~~~~~~~-----~~~~~d~~~~~~p~~~~~g~  263 (549)
T PRK07788        192 DLIAGSST---APLPKPPKPGGIVILTSGTTGTPKGAPRPEPSPLAPLAGLLSRV-----PFRAGETTLLPAPMFHATGW  263 (549)
T ss_pred             HHhcCCCC---CCCCCCCCCCcEEEECCCCCCCCCEEeccCccHHHHHHHHHhhC-----CCCcCCeEEEccchHHHHHH
Confidence            66643321   12233467889999999999999999999999998877766655     67888999999999999999


Q ss_pred             HHHHHHhhcCcEEEEecC-ChhhHHHHhhhhcCeEEEechHHHHHHHHHHHHHHHhhchHHHHHHHHHHHHHHHHHhhCC
Q 006111          282 VIEEYFFRRGASVGYYHG-DLNALRDDLMELKPTLLAGVPRVFEKIHEGIKKALEELRPLRRRIFDALYKYKLAWMNMGY  360 (660)
Q Consensus       282 ~~~l~~l~~G~~~v~~~~-~~~~~~~~i~~~~~t~~~~~p~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  360 (660)
                      ...+.++..|+++++... ++..+++.++++++|+++++|+++..+.+.......                         
T Consensus       264 ~~~~~~l~~G~~~v~~~~~~~~~~~~~i~~~~vt~~~~~P~~~~~l~~~~~~~~~-------------------------  318 (549)
T PRK07788        264 AHLTLAMALGSTVVLRRRFDPEATLEDIAKHKATALVVVPVMLSRILDLGPEVLA-------------------------  318 (549)
T ss_pred             HHHHHHHHhCCEEEECCCCCHHHHHHHHHHhCCcEEEEHHHHHHHHHhCcccccC-------------------------
Confidence            877788999999988765 999999999999999999999999988653221000                         


Q ss_pred             CCCCcchhhhHHHHHHHHHHhCCcEeEEEEccCCCCHHHHHHHHHhcCCceeeecCCCCCCCceecccCCCccccCccCC
Q 006111          361 KQREASPLADLLAFRKVKARLGGRLRLVISGGAPLSTEVEEFLRVTCCAFLVQGYGLTETCGPTTVCFPDEMCMVGTAGP  440 (660)
Q Consensus       361 ~~~~~~~~~~~~~~~~~~~~~~~~lr~i~~~G~~l~~~~~~~~~~~~~~~v~~~YG~tE~~~~~~~~~~~~~~~~~~~G~  440 (660)
                                ..        ..++||.+++||+++++++.+.+.+.++..+++.||+||++..+..........++++|.
T Consensus       319 ----------~~--------~~~~lr~i~~gG~~l~~~~~~~~~~~~~~~l~~~YG~TE~~~~~~~~~~~~~~~~~~vG~  380 (549)
T PRK07788        319 ----------KY--------DTSSLKIIFVSGSALSPELATRALEAFGPVLYNLYGSTEVAFATIATPEDLAEAPGTVGR  380 (549)
T ss_pred             ----------CC--------CCCceeEEEEeCCCCCHHHHHHHHHHhCccceeccCcchhchhhccChhhhhhcCCCccc
Confidence                      00        014899999999999999999999999999999999999987655444333334578999


Q ss_pred             CccCeeEEeeecCCCCCCCCCCCCCceEEEccCCcccccCCCchhhhhcccCCccccCceEEECCCCcEEEEeccCCeeE
Q 006111          441 VSVYSELRLEEVPEMGYSPLDDPPCGEVCVRGKTLFSGYYKNPDLTRESIIDGWFHTGDIGQILPNGVVKIIDRKKNLIK  520 (660)
Q Consensus       441 ~~~~~~v~ivd~~~~~~~~~~~~~~Gei~v~g~~~~~gy~~~~~~~~~~~~~g~~~TGDl~~~~~~G~l~~~GR~~d~i~  520 (660)
                      |+++++++++| +++..+  +.|+.|||+|+|+.++.||++++..   ...+|||+|||+|++|++|.+++.||.||+|+
T Consensus       381 ~~~~~~~~i~d-~~~~~~--~~g~~Gel~v~g~~~~~gY~~~~~~---~~~~g~~~TGDl~~~~~~g~l~~~GR~dd~i~  454 (549)
T PRK07788        381 PPKGVTVKILD-ENGNEV--PRGVVGRIFVGNGFPFEGYTDGRDK---QIIDGLLSSGDVGYFDEDGLLFVDGRDDDMIV  454 (549)
T ss_pred             CCCCcEEEEEC-CCcCCC--CCCCeEEEEEeCCCccccccCCCcc---cccCCceecCceEEEcCCCCEEEeccCcceEE
Confidence            99999999999 766544  4468999999999999999998765   34589999999999999999999999999999


Q ss_pred             cCCCeeecchhHHHHHhcCcCcceEEEEecCCC---CeEEEEEEcChhhHHHHHHHCCCCCcHHHHhccHHHHHHHHHHH
Q 006111          521 ISQGEYVALEYLENVYCVAPIIEDIWVYGDSLK---SMLVAVVVPCEEDTKKWAYSNGHAGSFLELCSLVQLQNYILSEL  597 (660)
Q Consensus       521 ~~~G~~v~~~~iE~~l~~~p~V~~~~V~~~~~~---~~~~a~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l  597 (660)
                      + +|++|+|.+||++|.+||+|.+|+|++.+++   +.++|+|+++++..        .        .        .++|
T Consensus       455 ~-~G~~v~p~eIE~~l~~~~~V~~~~v~~~~~~~~g~~~~a~vv~~~~~~--------~--------~--------~~~l  509 (549)
T PRK07788        455 S-GGENVFPAEVEDLLAGHPDVVEAAVIGVDDEEFGQRLRAFVVKAPGAA--------L--------D--------EDAI  509 (549)
T ss_pred             E-CCEEECHHHHHHHHHhCCCeeEEEEECCcCcccccEEEEEEEeCCCCC--------C--------C--------HHHH
Confidence            6 8999999999999999999999999997755   47899999876420        0        1        1344


Q ss_pred             HHHHHhCCCCCceeeeEEEEecCCCCCCCCccccccccchHHHHHH
Q 006111          598 KNAAERNKLRGFEHIKGVILDPRPFDMERDLVTATLKKKRNKLLIY  643 (660)
Q Consensus       598 ~~~~~~~~l~~~~~p~~i~~~~~~~~~~~~P~t~~GKv~R~~l~~~  643 (660)
                      +++++ .+||.|++|..|++++      ++|+|++||++|++|+++
T Consensus       510 ~~~~~-~~l~~~~~P~~i~~v~------~lP~t~~GKi~r~~L~~~  548 (549)
T PRK07788        510 KDYVR-DNLARYKVPRDVVFLD------ELPRNPTGKVLKRELREM  548 (549)
T ss_pred             HHHHH-HhhhcCCCCcEEEEeC------CCCCCCCcCEeHHHhhcc
Confidence            45554 6789999999999874      468999999999999753

>PRK07529 AMP-binding domain protein; Validated

Probab=100.00  E-value=1.1e-65  Score=576.29  Aligned_cols=520  Identities=22%  Similarity=0.238  Sum_probs=406.1

Q ss_pred             CCcHHHHHHHHHHhCCCCCceeeeccccCCCCCceEEeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEeCCchhHHHHHHH
Q 006111           41 LNTAWDIFSMSVQKYPGNRMLGWRPFVDGKFGPYVWKTYKEVYEEVLQIVSALRASGAEPGCRVGIYGANCPQWVEAMEA  120 (660)
Q Consensus        41 ~~ti~~~l~~~a~~~pd~~a~~~~~~~d~~~~~~~~~Ty~ql~~~v~~lA~~L~~~Gl~~gd~V~l~~~n~~e~~~~~lA  120 (660)
                      ..|+.++|...++++|+++|+++... ++.....+++||+||.+++.++|+.|++.|+++||+|+++++|++++++++||
T Consensus        24 ~~t~~~~l~~~a~~~p~~~Al~~~~~-~~~~~~~~~~Ty~eL~~~v~~~A~~L~~~Gi~~gd~V~i~~~n~~e~~~~~lA  102 (632)
T PRK07529         24 PASTYELLSRAAARHPDAPALSFLLD-ADPLDRPETWTYAELLADVTRTANLLHSLGVGPGDVVAFLLPNLPETHFALWG  102 (632)
T ss_pred             CCCHHHHHHHHHHHCCCCceEEeecc-cCCCCCCceeEHHHHHHHHHHHHHHHHHcCCCCCCEEEEECCCCHHHHHHHHH
Confidence            46899999999999999999987411 11112347899999999999999999999999999999999999999999999


Q ss_pred             HHhCCCeEEecCCCCChhHHHHHHhcccceEEEEccchh-----hhhhccccccccCccEEEEecCCcHH--HHHHHh--
Q 006111          121 CNALSLICVPLYDTLGPGAVNFILDHAEIDFVFVQDKKV-----KELLSPDCRSAQRLRVMVCFTSLTAE--QKEMAV--  191 (660)
Q Consensus       121 ~~~~G~~~vpl~~~~~~~~l~~~l~~~~~~~ii~~~~~~-----~~~~~~~~~~~~~~~~i~~~~~~~~~--~~~~~~--  191 (660)
                      |+++| +++|+++.++.+++..+++.++++++|++....     ..+.... ...+.+..++..+.....  ...+..  
T Consensus       103 ~~~~G-i~~pi~~~~~~~~i~~~l~~~~~~~li~~~~~~~~~~~~~~~~~~-~~~~~~~~v~~~~~~~~~~~~~~~~~~~  180 (632)
T PRK07529        103 GEAAG-IANPINPLLEPEQIAELLRAAGAKVLVTLGPFPGTDIWQKVAEVL-AALPELRTVVEVDLARYLPGPKRLAVPL  180 (632)
T ss_pred             HHHhC-EEEeCCCcCCHHHHHHHHHhcCCcEEEEeCCCCCchHHHHHHHHH-hcCCcceeEEEecCcccccccccccccc
Confidence            99999 579999999999999999999999999986532     1111111 122344555555432100  000000  


Q ss_pred             ---hCCcceeeHHHHHhcCccCC-ccCCCCCCCceEEEEecCCCCCCCceeeecchhHHHHhhhhhhhcccccCCCCCCc
Q 006111          192 ---QTGIKPYSWDEFLHLGKVNE-MEILPPQPFNICTIMYTSGTSGDPKGVVLTHETIATFVSGVDLFLDQFEDKMTVDD  267 (660)
Q Consensus       192 ---~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~i~~TSGTTG~pK~v~~th~~l~~~~~~~~~~~~~~~~~~~~~~  267 (660)
                         .......++.+.+....... .......++++++++|||||||.||+|.+||++++..+......+     ++..++
T Consensus       181 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~a~i~~TSGTTG~PK~v~~sh~~l~~~~~~~~~~~-----~~~~~d  255 (632)
T PRK07529        181 IRRKAHARILDFDAELARQPGDRLFSGRPIGPDDVAAYFHTGGTTGMPKLAQHTHGNEVANAWLGALLL-----GLGPGD  255 (632)
T ss_pred             cccccccccCCHHHHHhcCCCccccccCCCCcCceEEEEECCCccCcCCEEEEcHHHHHHHHHHHHHhc-----CCCCCC
Confidence               01122345555554432221 122334679999999999999999999999999998877666555     678899


Q ss_pred             EEEEecChhHHHHHHH-HHHHhhcCcEEEEecC----C---hhhHHHHhhhhcCeEEEechHHHHHHHHHHHHHHHhhch
Q 006111          268 VYLSFLPLAHILDRVI-EEYFFRRGASVGYYHG----D---LNALRDDLMELKPTLLAGVPRVFEKIHEGIKKALEELRP  339 (660)
Q Consensus       268 ~~l~~~pl~~~~g~~~-~l~~l~~G~~~v~~~~----~---~~~~~~~i~~~~~t~~~~~p~~~~~l~~~~~~~~~~~~~  339 (660)
                      ++++.+|++|.+++.. .+.+++.|+++++.+.    +   ...+++.++++++|++.++|+++..|.+....       
T Consensus       256 ~~l~~~pl~h~~~~~~~~~~~l~~G~~vv~~~~~~~~~~~~~~~~~~~i~~~~vt~~~~~P~~~~~l~~~~~~-------  328 (632)
T PRK07529        256 TVFCGLPLFHVNALLVTGLAPLARGAHVVLATPQGYRGPGVIANFWKIVERYRINFLSGVPTVYAALLQVPVD-------  328 (632)
T ss_pred             EEEEecCchhhhHHHHHHHHHHHCCCEEEecCccccCcchHHHHHHHHHHHhCCeEEEeHHHHHHHHHhCccc-------
Confidence            9999999999998875 6777999999998753    2   35788999999999999999999988642100       


Q ss_pred             HHHHHHHHHHHHHHHHHhhCCCCCCcchhhhHHHHHHHHHHhCCcEeEEEEccCCCCHHHHHHHHHhcCCceeeecCCCC
Q 006111          340 LRRRIFDALYKYKLAWMNMGYKQREASPLADLLAFRKVKARLGGRLRLVISGGAPLSTEVEEFLRVTCCAFLVQGYGLTE  419 (660)
Q Consensus       340 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lr~i~~~G~~l~~~~~~~~~~~~~~~v~~~YG~tE  419 (660)
                                                     ..+        .++||.+++||+++++++.+.+++.+|+++++.||+||
T Consensus       329 -------------------------------~~~--------~~slr~v~~gg~~l~~~l~~~~~~~~g~~l~~~YG~TE  369 (632)
T PRK07529        329 -------------------------------GHD--------ISSLRYALCGAAPLPVEVFRRFEAATGVRIVEGYGLTE  369 (632)
T ss_pred             -------------------------------CCC--------ccceEEEEEcCCCCCHHHHHHHHHHhCCcEeeeecccc
Confidence                                           001        14899999999999999999999999999999999999


Q ss_pred             CCCceecccCCCccccCccCCCccCeeEEeeecCCCCC--CCCCCCCCceEEEccCCcccccCCCchhhhhcc-cCCccc
Q 006111          420 TCGPTTVCFPDEMCMVGTAGPVSVYSELRLEEVPEMGY--SPLDDPPCGEVCVRGKTLFSGYYKNPDLTRESI-IDGWFH  496 (660)
Q Consensus       420 ~~~~~~~~~~~~~~~~~~~G~~~~~~~v~ivd~~~~~~--~~~~~~~~Gei~v~g~~~~~gy~~~~~~~~~~~-~~g~~~  496 (660)
                      ++.+++.++.......+++|.|+++++++++..++++.  .+++.|+.|||+|+||+++.||++++. +...| .+|||+
T Consensus       370 ~~~~~~~~~~~~~~~~~svG~~~p~~~v~i~~~d~~g~~~~~~~~g~~Gel~v~gp~v~~GY~~~~~-~~~~~~~~gw~~  448 (632)
T PRK07529        370 ATCVSSVNPPDGERRIGSVGLRLPYQRVRVVILDDAGRYLRDCAVDEVGVLCIAGPNVFSGYLEAAH-NKGLWLEDGWLN  448 (632)
T ss_pred             cCcccccCCccccccCCCcccccCCceEEEEEcCCCCcccccCCCCCceEEEEECCCccccccCCcc-ccccccCCCceE
Confidence            99877766554444568999999999999975333331  456677899999999999999998754 44555 789999


Q ss_pred             cCceEEECCCCcEEEEeccCCeeEcCCCeeecchhHHHHHhcCcCcceEEEEecCCC---CeEEEEEEcChhhHHHHHHH
Q 006111          497 TGDIGQILPNGVVKIIDRKKNLIKISQGEYVALEYLENVYCVAPIIEDIWVYGDSLK---SMLVAVVVPCEEDTKKWAYS  573 (660)
Q Consensus       497 TGDl~~~~~~G~l~~~GR~~d~i~~~~G~~v~~~~iE~~l~~~p~V~~~~V~~~~~~---~~~~a~v~~~~~~~~~~~~~  573 (660)
                      |||+|++|+||.+++.||.||+|++ +|++|+|.+||+.|.+||+|.+|+|++.++.   +.++|+|++.++..      
T Consensus       449 TGDlg~~d~dG~l~i~GR~~d~i~~-~G~~i~p~eIE~~l~~~p~V~~a~vvg~~d~~~ge~~~a~v~l~~~~~------  521 (632)
T PRK07529        449 TGDLGRIDADGYFWLTGRAKDLIIR-GGHNIDPAAIEEALLRHPAVALAAAVGRPDAHAGELPVAYVQLKPGAS------  521 (632)
T ss_pred             cCcEEEEcCCceEEEEecccCEEEe-CCEEECHHHHHHHHHhCCCeeEEEEEeccCCCCCceeEEEEEEcCCCC------
Confidence            9999999999999999999999996 8999999999999999999999999997654   48899999887530      


Q ss_pred             CCCCCcHHHHhccHHHHHHHHHHHHHHHHhCCCC-CceeeeEEEEecCCCCCCCCccccccccchHHHHHHHHHH
Q 006111          574 NGHAGSFLELCSLVQLQNYILSELKNAAERNKLR-GFEHIKGVILDPRPFDMERDLVTATLKKKRNKLLIYYQVE  647 (660)
Q Consensus       574 ~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~l~-~~~~p~~i~~~~~~~~~~~~P~t~~GKv~R~~l~~~~~~~  647 (660)
                        .        ..        ++|.++++ .+++ .+++|+.|.+++      .+|+|++||++|++|++++..+
T Consensus       522 --~--------~~--------~~l~~~~~-~~l~~~~~~P~~i~~v~------~lP~t~~GKi~r~~Lr~~~~~~  571 (632)
T PRK07529        522 --A--------TE--------AELLAFAR-DHIAERAAVPKHVRILD------ALPKTAVGKIFKPALRRDAIRR  571 (632)
T ss_pred             --C--------CH--------HHHHHHHH-HhcchhccCCcEEEEec------CCCCCCCCcccHHHHHHHHHHH
Confidence              0        11        23334443 4554 578999999874      4689999999999999988553

>PRK00174 acetyl-CoA synthetase; Provisional

Probab=100.00  E-value=1.1e-65  Score=578.47  Aligned_cols=518  Identities=18%  Similarity=0.209  Sum_probs=407.8

Q ss_pred             CCCcHHHHHHHHHHhCCCCCceeeeccccCCCCCceEEeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEeCCchhHHHHHH
Q 006111           40 DLNTAWDIFSMSVQKYPGNRMLGWRPFVDGKFGPYVWKTYKEVYEEVLQIVSALRASGAEPGCRVGIYGANCPQWVEAME  119 (660)
Q Consensus        40 ~~~ti~~~l~~~a~~~pd~~a~~~~~~~d~~~~~~~~~Ty~ql~~~v~~lA~~L~~~Gl~~gd~V~l~~~n~~e~~~~~l  119 (660)
                      ..|...++|+++++++|+++|+++.   +..++..+++||+||.+++.++|++|.+.|+++||+|+++++|++++++++|
T Consensus        65 ~~n~~~~~l~~~~~~~p~~~Al~~~---~~~~~~~~~lTy~eL~~~v~~lA~~L~~~Gv~~gd~V~i~~~n~~e~~~~~l  141 (637)
T PRK00174         65 ELNVSYNCLDRHLKTRGDKVAIIWE---GDDPGDSRKITYRELHREVCRFANALKSLGVKKGDRVAIYMPMIPEAAVAML  141 (637)
T ss_pred             EeEHHHHHHHHhhccCCCCeEEEEE---CCCCCceEEEEHHHHHHHHHHHHHHHHHcCCCCCCEEEEEcCCCHHHHHHHH
Confidence            3455678888889999999999986   4333345789999999999999999999999999999999999999999999


Q ss_pred             HHHhCCCeEEecCCCCChhHHHHHHhcccceEEEEccchhh---------hhhccccccccCccEEEEecCCcHHHHHHH
Q 006111          120 ACNALSLICVPLYDTLGPGAVNFILDHAEIDFVFVQDKKVK---------ELLSPDCRSAQRLRVMVCFTSLTAEQKEMA  190 (660)
Q Consensus       120 A~~~~G~~~vpl~~~~~~~~l~~~l~~~~~~~ii~~~~~~~---------~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~  190 (660)
                      ||+++|++++|+++.++.+++..+++.++++++|+++....         .+.+.. ...+.+..++..+......    
T Consensus       142 A~~~~Gav~v~l~~~~~~~~l~~~l~~~~~~~li~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~----  216 (637)
T PRK00174        142 ACARIGAVHSVVFGGFSAEALADRIIDAGAKLVITADEGVRGGKPIPLKANVDEAL-ANCPSVEKVIVVRRTGGDV----  216 (637)
T ss_pred             HHHHcCCEEEecCCCCCHHHHHHHHHhcCCcEEEEcCccccCCcccchHHHHHHHH-HhCCCccEEEEEcCCCCCc----
Confidence            99999999999999999999999999999999999875421         111111 1123344555544321100    


Q ss_pred             hhCCcceeeHHHHHhcCccCCccCCCCCCCceEEEEecCCCCCCCceeeecchhHHHHhhh-hhhhcccccCCCCCCcEE
Q 006111          191 VQTGIKPYSWDEFLHLGKVNEMEILPPQPFNICTIMYTSGTSGDPKGVVLTHETIATFVSG-VDLFLDQFEDKMTVDDVY  269 (660)
Q Consensus       191 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~TSGTTG~pK~v~~th~~l~~~~~~-~~~~~~~~~~~~~~~~~~  269 (660)
                      .........|.++.... ....+.....++++++|+|||||||.||+|+++|++++..+.. ....+     ++..+|++
T Consensus       217 ~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~d~a~i~~TSGTTG~PKgV~~s~~~~~~~~~~~~~~~~-----~~~~~d~~  290 (637)
T PRK00174        217 DWVEGRDLWWHELVAGA-SDECEPEPMDAEDPLFILYTSGSTGKPKGVLHTTGGYLVYAAMTMKYVF-----DYKDGDVY  290 (637)
T ss_pred             CcCCCCcccHHHHHhhc-CCCCCccccCCCCcEEEEECCCCCCCCceEEeCcchhHHHHHHHHHhcc-----CCCCCcEE
Confidence            00001123455555432 2222334456789999999999999999999999998765443 22233     67788999


Q ss_pred             EEecChhHHHHHHH-HHHHhhcCcEEEEecC-----ChhhHHHHhhhhcCeEEEechHHHHHHHHHHHHHHHhhchHHHH
Q 006111          270 LSFLPLAHILDRVI-EEYFFRRGASVGYYHG-----DLNALRDDLMELKPTLLAGVPRVFEKIHEGIKKALEELRPLRRR  343 (660)
Q Consensus       270 l~~~pl~~~~g~~~-~l~~l~~G~~~v~~~~-----~~~~~~~~i~~~~~t~~~~~p~~~~~l~~~~~~~~~~~~~~~~~  343 (660)
                      ++..|++|..++.. ++.+++.|+++++.+.     ++..+++.|+++++|++.++|++++.|.+......         
T Consensus       291 ~~~~~~~~~~~~~~~~~~~l~~G~~~v~~~~~~~~~~~~~~~~~i~~~~vt~~~~~P~~~~~l~~~~~~~~---------  361 (637)
T PRK00174        291 WCTADVGWVTGHSYIVYGPLANGATTLMFEGVPNYPDPGRFWEVIDKHKVTIFYTAPTAIRALMKEGDEHP---------  361 (637)
T ss_pred             EEcCCchHhhhhHHHHHHHHHcCCEEEEECCCCCCCChHHHHHHHHhcCCeEEeecHHHHHHHHhcCCccc---------
Confidence            99999999988764 6778999999998753     68999999999999999999999998865321100         


Q ss_pred             HHHHHHHHHHHHHhhCCCCCCcchhhhHHHHHHHHHHhCCcEeEEEEccCCCCHHHHHHHHHhcC---CceeeecCCCCC
Q 006111          344 IFDALYKYKLAWMNMGYKQREASPLADLLAFRKVKARLGGRLRLVISGGAPLSTEVEEFLRVTCC---AFLVQGYGLTET  420 (660)
Q Consensus       344 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lr~i~~~G~~l~~~~~~~~~~~~~---~~v~~~YG~tE~  420 (660)
                                                ...        .+++||.++++|+++++++.+++.+.++   +++++.||+||+
T Consensus       362 --------------------------~~~--------~~~~lr~i~~~Ge~l~~~~~~~~~~~~~~~~~~i~~~YG~TE~  407 (637)
T PRK00174        362 --------------------------KKY--------DLSSLRLLGSVGEPINPEAWEWYYKVVGGERCPIVDTWWQTET  407 (637)
T ss_pred             --------------------------ccC--------CccceeEEEEeCCCCCHHHHHHHHHHhCCCCCceEeccccccc
Confidence                                      001        1148999999999999999999998875   789999999999


Q ss_pred             CCceecccCCC-ccccCccCCCccCeeEEeeecCCCCCCCCCCCCCceEEEcc--CCcccccCCCchhhhhcc---cCCc
Q 006111          421 CGPTTVCFPDE-MCMVGTAGPVSVYSELRLEEVPEMGYSPLDDPPCGEVCVRG--KTLFSGYYKNPDLTRESI---IDGW  494 (660)
Q Consensus       421 ~~~~~~~~~~~-~~~~~~~G~~~~~~~v~ivd~~~~~~~~~~~~~~Gei~v~g--~~~~~gy~~~~~~~~~~~---~~g~  494 (660)
                      ++.++....+. ....+++|.|++|++++|+| +++..+  +.|+.|||+|+|  |+++.||+++++.+.+.+   .+||
T Consensus       408 ~~~~~~~~~~~~~~~~~~vG~p~~g~~~~i~d-~~g~~~--~~g~~Gel~v~g~~p~~~~gy~~~~~~~~~~~~~~~~g~  484 (637)
T PRK00174        408 GGIMITPLPGATPLKPGSATRPLPGIQPAVVD-EEGNPL--EGGEGGNLVIKDPWPGMMRTIYGDHERFVKTYFSTFKGM  484 (637)
T ss_pred             CCceEecCCCCCCcCCCcccCCCCCceEEEEC-CCCCCC--CCCCcEEEEEcCCCCcccccccCCHHHHHHhhhcCCCCE
Confidence            98765443322 23457899999999999999 776644  456899999999  689999999998877665   4899


Q ss_pred             cccCceEEECCCCcEEEEeccCCeeEcCCCeeecchhHHHHHhcCcCcceEEEEecCCC---CeEEEEEEcChhhHHHHH
Q 006111          495 FHTGDIGQILPNGVVKIIDRKKNLIKISQGEYVALEYLENVYCVAPIIEDIWVYGDSLK---SMLVAVVVPCEEDTKKWA  571 (660)
Q Consensus       495 ~~TGDl~~~~~~G~l~~~GR~~d~i~~~~G~~v~~~~iE~~l~~~p~V~~~~V~~~~~~---~~~~a~v~~~~~~~~~~~  571 (660)
                      |+|||+|++|++|+++++||.||+|++ +|++|+|.+||++|.+||+|.+|+|++.+++   +.++|+|++.++..    
T Consensus       485 ~~TGDl~~~d~dG~l~~~GR~dd~ik~-~G~~v~p~eIE~~l~~~~~V~~~~Vvg~~~~~~g~~~~a~vv~~~~~~----  559 (637)
T PRK00174        485 YFTGDGARRDEDGYYWITGRVDDVLNV-SGHRLGTAEIESALVAHPKVAEAAVVGRPDDIKGQGIYAFVTLKGGEE----  559 (637)
T ss_pred             EECCceEEEcCCCcEEEEEecccEEEe-CCEEECHHHHHHHHHhCCCcceEEEEeeEcCCCCeEEEEEEEECCCCC----
Confidence            999999999999999999999999997 7999999999999999999999999997654   48999999887530    


Q ss_pred             HHCCCCCcHHHHhccHHHHHHHHHHHHHHHHhCCCCCceeeeEEEEecCCCCCCCCccccccccchHHHHHHHHH
Q 006111          572 YSNGHAGSFLELCSLVQLQNYILSELKNAAERNKLRGFEHIKGVILDPRPFDMERDLVTATLKKKRNKLLIYYQV  646 (660)
Q Consensus       572 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~l~~~~~p~~i~~~~~~~~~~~~P~t~~GKv~R~~l~~~~~~  646 (660)
                                   ..    ..+.++|+++++ ..|+.|++|..|+++      +.+|+|++||++|++|++.+..
T Consensus       560 -------------~~----~~~~~~l~~~l~-~~l~~~~~P~~i~~v------~~lP~t~~GKi~R~~L~~~~~~  610 (637)
T PRK00174        560 -------------PS----DELRKELRNWVR-KEIGPIAKPDVIQFA------PGLPKTRSGKIMRRILRKIAEG  610 (637)
T ss_pred             -------------CC----HHHHHHHHHHHH-hhcCCccCCCEEEEc------CCCCCCCCcchHHHHHHHHHcC
Confidence                         01    223345556655 689999999999987      4468999999999999988654

>PRK04319 acetyl-CoA synthetase; Provisional

Probab=100.00  E-value=1.2e-65  Score=571.34  Aligned_cols=509  Identities=18%  Similarity=0.206  Sum_probs=415.6

Q ss_pred             CCCcHHHHHHHHHH-hCCCCCceeeeccccCCCCCceEEeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEeCCchhHHHHH
Q 006111           40 DLNTAWDIFSMSVQ-KYPGNRMLGWRPFVDGKFGPYVWKTYKEVYEEVLQIVSALRASGAEPGCRVGIYGANCPQWVEAM  118 (660)
Q Consensus        40 ~~~ti~~~l~~~a~-~~pd~~a~~~~~~~d~~~~~~~~~Ty~ql~~~v~~lA~~L~~~Gl~~gd~V~l~~~n~~e~~~~~  118 (660)
                      .++.+.+++++++. .+|+++|+.+.   +..  ..+++||+||.++++++|.+|.+.|+++||+|+++++|++++++++
T Consensus        41 ~~~~~~~~~~~~~~~~~~~~~a~~~~---~~~--~~~~~Ty~el~~~v~~~A~~L~~~gv~~gd~V~i~~~n~~~~~~~~  115 (570)
T PRK04319         41 KVNIAYEAIDRHADGGRKDKVALRYL---DAS--RKEKYTYKELKELSNKFANVLKELGVEKGDRVFIFMPRIPELYFAL  115 (570)
T ss_pred             ceeHHHHHHHHhhccCCCCceEEEEE---CCC--CceeecHHHHHHHHHHHHHHHHHhCCCCCCEEEEECCCCHHHHHHH
Confidence            46777789998887 58999999876   432  3368999999999999999999999999999999999999999999


Q ss_pred             HHHHhCCCeEEecCCCCChhHHHHHHhcccceEEEEccchhhhhhccccccccCccEEEEecCCcHHHHHHHhhCCccee
Q 006111          119 EACNALSLICVPLYDTLGPGAVNFILDHAEIDFVFVQDKKVKELLSPDCRSAQRLRVMVCFTSLTAEQKEMAVQTGIKPY  198 (660)
Q Consensus       119 lA~~~~G~~~vpl~~~~~~~~l~~~l~~~~~~~ii~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~  198 (660)
                      |||+++|++++|+++.++.+++..+++.++++++|++..........   ..+....++..++...        ......
T Consensus       116 la~~~~G~v~vpl~~~~~~~~l~~~l~~~~~~~ii~~~~~~~~~~~~---~~~~~~~~~~~~~~~~--------~~~~~~  184 (570)
T PRK04319        116 LGALKNGAIVGPLFEAFMEEAVRDRLEDSEAKVLITTPALLERKPAD---DLPSLKHVLLVGEDVE--------EGPGTL  184 (570)
T ss_pred             HHHHHcCcEEcccccccCHHHHHHHHHccCCcEEEEChhhhhccchh---cCCCceEEEEECCCcC--------CCcCcc
Confidence            99999999999999999999999999999999999988765543221   2234445555543211        011223


Q ss_pred             eHHHHHhcCccCCccCCCCCCCceEEEEecCCCCCCCceeeecchhHHHHhhhhhhhcccccCCCCCCcEEEEecChhHH
Q 006111          199 SWDEFLHLGKVNEMEILPPQPFNICTIMYTSGTSGDPKGVVLTHETIATFVSGVDLFLDQFEDKMTVDDVYLSFLPLAHI  278 (660)
Q Consensus       199 ~~~~~~~~~~~~~~~~~~~~~~~~~~i~~TSGTTG~pK~v~~th~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~pl~~~  278 (660)
                      ++.++..... ......+..++++++++|||||||.||+|.++|+++...+......+     ++..+|++++..|++|.
T Consensus       185 ~~~~~~~~~~-~~~~~~~~~~~~~a~i~~TSGTTG~PKgV~~s~~~l~~~~~~~~~~~-----~~~~~d~~~~~~~~~~~  258 (570)
T PRK04319        185 DFNALMEQAS-DEFDIEWTDREDGAILHYTSGSTGKPKGVLHVHNAMLQHYQTGKYVL-----DLHEDDVYWCTADPGWV  258 (570)
T ss_pred             CHHHHHhhcC-CcCCccccCCCCCEEEEeCCCCCCCCCEEEEecHHHHHHHHHHHHhc-----CCCCCceEEecCChHHh
Confidence            5555554432 22223345678999999999999999999999999998877766655     78889999999999999


Q ss_pred             HHHHH-HHHHhhcCcEEEEecC--ChhhHHHHhhhhcCeEEEechHHHHHHHHHHHHHHHhhchHHHHHHHHHHHHHHHH
Q 006111          279 LDRVI-EEYFFRRGASVGYYHG--DLNALRDDLMELKPTLLAGVPRVFEKIHEGIKKALEELRPLRRRIFDALYKYKLAW  355 (660)
Q Consensus       279 ~g~~~-~l~~l~~G~~~v~~~~--~~~~~~~~i~~~~~t~~~~~p~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  355 (660)
                      +|+.. ++.++..|+++++...  ++..+++.|+++++|+++++|.+++.+.+.....                      
T Consensus       259 ~g~~~~~~~~l~~G~~~v~~~~~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~----------------------  316 (570)
T PRK04319        259 TGTSYGIFAPWLNGATNVIDGGRFSPERWYRILEDYKVTVWYTAPTAIRMLMGAGDDL----------------------  316 (570)
T ss_pred             hCchHHHHHHHhcCceEEEECCCCCHHHHHHHHHHcCCeEEEeCHHHHHHHHhcCCcc----------------------
Confidence            88765 6778999999988764  8999999999999999999999999886421100                      


Q ss_pred             HhhCCCCCCcchhhhHHHHHHHHHHhCCcEeEEEEccCCCCHHHHHHHHHhcCCceeeecCCCCCCCceecccCCCcccc
Q 006111          356 MNMGYKQREASPLADLLAFRKVKARLGGRLRLVISGGAPLSTEVEEFLRVTCCAFLVQGYGLTETCGPTTVCFPDEMCMV  435 (660)
Q Consensus       356 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lr~i~~~G~~l~~~~~~~~~~~~~~~v~~~YG~tE~~~~~~~~~~~~~~~~  435 (660)
                                   ....++        ++||.+++||+++++++.+++.+.+|.++++.||+||++..++.........+
T Consensus       317 -------------~~~~~~--------~~lr~~~~gG~~l~~~~~~~~~~~~g~~i~~~YG~tE~~~~~~~~~~~~~~~~  375 (570)
T PRK04319        317 -------------VKKYDL--------SSLRHILSVGEPLNPEVVRWGMKVFGLPIHDNWWMTETGGIMIANYPAMDIKP  375 (570)
T ss_pred             -------------cccCCc--------ccceEEEEcccCCCHHHHHHHHHHhCCCeEeceeecccCCEEEecCCCCCCCC
Confidence                         000111        48999999999999999999999899999999999999987655444333445


Q ss_pred             CccCCCccCeeEEeeecCCCCCCCCCCCCCceEEEcc--CCcccccCCCchhhhhcccCCccccCceEEECCCCcEEEEe
Q 006111          436 GTAGPVSVYSELRLEEVPEMGYSPLDDPPCGEVCVRG--KTLFSGYYKNPDLTRESIIDGWFHTGDIGQILPNGVVKIID  513 (660)
Q Consensus       436 ~~~G~~~~~~~v~ivd~~~~~~~~~~~~~~Gei~v~g--~~~~~gy~~~~~~~~~~~~~g~~~TGDl~~~~~~G~l~~~G  513 (660)
                      +++|.|+++++++|+| +++...  +.|+.|||+++|  |.++.||++++..+.+.|.+|||+|||+|+++++|.++++|
T Consensus       376 ~~~G~p~~g~~~~i~d-~~~~~~--~~g~~Gel~i~~~~~~~~~GY~~~~~~~~~~~~~gw~~TGDl~~~~~~g~l~~~G  452 (570)
T PRK04319        376 GSMGKPLPGIEAAIVD-DQGNEL--PPNRMGNLAIKKGWPSMMRGIWNNPEKYESYFAGDWYVSGDSAYMDEDGYFWFQG  452 (570)
T ss_pred             CcCcCCCCCCEEEEEC-CCCCCC--CCCCceEEEEcCCCChHHhHhcCCHHHhhhhhcCCceEeCcEEEECCCeeEEEEe
Confidence            8999999999999999 666644  566899999997  89999999999999999999999999999999999999999


Q ss_pred             ccCCeeEcCCCeeecchhHHHHHhcCcCcceEEEEecCCC---CeEEEEEEcChhhHHHHHHHCCCCCcHHHHhccHHHH
Q 006111          514 RKKNLIKISQGEYVALEYLENVYCVAPIIEDIWVYGDSLK---SMLVAVVVPCEEDTKKWAYSNGHAGSFLELCSLVQLQ  590 (660)
Q Consensus       514 R~~d~i~~~~G~~v~~~~iE~~l~~~p~V~~~~V~~~~~~---~~~~a~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  590 (660)
                      |.+|+|++ +|++|+|.+||+.|.+||.|.+++|++.+++   +.++++|++.++..                 ...   
T Consensus       453 R~~d~i~~-~G~~i~p~eIE~~l~~~~~V~~~~v~g~~~~~~g~~~~a~v~~~~~~~-----------------~~~---  511 (570)
T PRK04319        453 RVDDVIKT-SGERVGPFEVESKLMEHPAVAEAGVIGKPDPVRGEIIKAFVALRPGYE-----------------PSE---  511 (570)
T ss_pred             cCCCEEEE-CCEEECHHHHHHHHhhCCCeeecceecccCcCCceEEEEEEEECCCCC-----------------CCH---
Confidence            99999997 8999999999999999999999999997754   48888888876430                 111   


Q ss_pred             HHHHHHHHHHHHhCCCCCceeeeEEEEecCCCCCCCCccccccccchHHHHHHHH
Q 006111          591 NYILSELKNAAERNKLRGFEHIKGVILDPRPFDMERDLVTATLKKKRNKLLIYYQ  645 (660)
Q Consensus       591 ~~~~~~l~~~~~~~~l~~~~~p~~i~~~~~~~~~~~~P~t~~GKv~R~~l~~~~~  645 (660)
                       .+.++|.++++ .+|+.|++|+.|+++      +.+|+|++||++|++|+++..
T Consensus       512 -~~~~~l~~~~~-~~l~~~~~P~~i~~v------~~iP~t~~GKv~r~~L~~~~~  558 (570)
T PRK04319        512 -ELKEEIRGFVK-KGLGAHAAPREIEFK------DKLPKTRSGKIMRRVLKAWEL  558 (570)
T ss_pred             -HHHHHHHHHHH-HhcccccCCcEEEEe------CCCCCCCchhhhHHHHHHHHh
Confidence             23345555555 689999999999987      446899999999999998753

>COG1021 EntE Peptide arylation enzymes [Secondary metabolites biosynthesis, transport, and catabolism]

Probab=100.00  E-value=8.9e-67  Score=499.90  Aligned_cols=501  Identities=20%  Similarity=0.192  Sum_probs=426.6

Q ss_pred             CCcHHHHHHHHHHhCCCCCceeeeccccCCCCCceEEeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEeCCchhHHHHHHH
Q 006111           41 LNTAWDIFSMSVQKYPGNRMLGWRPFVDGKFGPYVWKTYKEVYEEVLQIVSALRASGAEPGCRVGIYGANCPQWVEAMEA  120 (660)
Q Consensus        41 ~~ti~~~l~~~a~~~pd~~a~~~~~~~d~~~~~~~~~Ty~ql~~~v~~lA~~L~~~Gl~~gd~V~l~~~n~~e~~~~~lA  120 (660)
                      ..++.++|..+|+++||++|+++.   +      +++||++|.++++++|++|++.|+++||+|.+.+||..++++++||
T Consensus        27 d~~l~d~L~~~A~~~pdriAv~d~---~------~~~sY~eLdqr~d~LAa~l~~lGi~~Gd~vlvQLpN~~ef~~~~FA   97 (542)
T COG1021          27 DRTLTDILTDHAARYPDRIAVIDG---E------RRLSYAELDQRADRLAAGLRRLGIKPGDTVLVQLPNVAEFYITFFA   97 (542)
T ss_pred             CCcHHHHHHHHHhhcCCceEEecC---c------ccccHHHHHHHHHHHHHHHHhcCCCCCCEEEEECCchHHHHHHHHH
Confidence            578999999999999999999975   3      4799999999999999999999999999999999999999999999


Q ss_pred             HHhCCCeEEecCCCCChhHHHHHHhcccceEEEEccchhh----hhhccccccccCccEEEEecCCcHHHHHHHhhCCcc
Q 006111          121 CNALSLICVPLYDTLGPGAVNFILDHAEIDFVFVQDKKVK----ELLSPDCRSAQRLRVMVCFTSLTAEQKEMAVQTGIK  196 (660)
Q Consensus       121 ~~~~G~~~vpl~~~~~~~~l~~~l~~~~~~~ii~~~~~~~----~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~  196 (660)
                      ++++|+.+|.--|.....+|..+.+.+.++.+|.+.....    .+........+.++++++.++....           
T Consensus        98 LlrlGv~PVlALpsHr~~Ei~~f~~~~e~~~~i~~~~~~gFd~~~~ar~~~a~~~tlr~v~v~ge~~~~-----------  166 (542)
T COG1021          98 LLRLGVAPVLALPSHRASELGAFASQIEAALLIVARQHSGFDYRPFARELVAKHPTLRHVIVAGEAEHP-----------  166 (542)
T ss_pred             HHHcCcchhhccchhhHHHHHHHHHhhcchheeechhhcccCcHHHHHHHHhhCCcceEEEEccCCCCc-----------
Confidence            9999999999999999999999999999999999875432    2223333455777888887554211           


Q ss_pred             eeeHHHHHhcCccCCccCCCCCCCceEEEEecCCCCCCCceeeecchhHHHHhhhhhhhcccccCCCCCCcEEEEecChh
Q 006111          197 PYSWDEFLHLGKVNEMEILPPQPFNICTIMYTSGTSGDPKGVVLTHETIATFVSGVDLFLDQFEDKMTVDDVYLSFLPLA  276 (660)
Q Consensus       197 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~TSGTTG~pK~v~~th~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~pl~  276 (660)
                      ...+..+... .....+..+.++++++++..+.||||.||-|..||.....++..-.+.+     +++..+++++.+|..
T Consensus       167 ~~~~~~~~~~-a~~~~~a~~~~~~~vA~fqLSGGTTGtPKLIPRtH~DY~Ysv~aSaEiC-----~~~~~tvyL~~LP~A  240 (542)
T COG1021         167 SVLEAALCHP-AGLFTPAPPADAGEVAFFQLSGGTTGTPKLIPRTHNDYYYSVRASAEIC-----GFDQQTVYLCALPAA  240 (542)
T ss_pred             chhhhhhhCc-cccCCcCCCCCCCceEEEEecCCCCCCCccccccccceeeeeeehhhhh-----CcCccceEEEecccc
Confidence            1122222222 2344455677889999999999999999999999999999998888888     899999999999999


Q ss_pred             HHHHHHH--HHHHhhcCcEEEEecC-ChhhHHHHhhhhcCeEEEechHHHHHHHHHHHHHHHhhchHHHHHHHHHHHHHH
Q 006111          277 HILDRVI--EEYFFRRGASVGYYHG-DLNALRDDLMELKPTLLAGVPRVFEKIHEGIKKALEELRPLRRRIFDALYKYKL  353 (660)
Q Consensus       277 ~~~g~~~--~l~~l~~G~~~v~~~~-~~~~~~~~i~~~~~t~~~~~p~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~  353 (660)
                      |.+.+..  .+..+++|+++|+.+. ++..-...|+++++|+...+|.....+++..+.                     
T Consensus       241 HNfplssPG~LGv~~agG~VVla~~psp~~~F~lIerh~Vt~tALVPpla~LWlqa~e~---------------------  299 (542)
T COG1021         241 HNFPLSSPGALGVFLAGGTVVLAPDPSPELCFPLIERHGVTVTALVPPLASLWLQAAEW---------------------  299 (542)
T ss_pred             cCCCCCCcchhheeeeccEEEECCCCCHHHHHHHHHHhccceEEeccHHHHHHHHhhhc---------------------
Confidence            9998875  6788999999999886 999999999999999999999999888765443                     


Q ss_pred             HHHhhCCCCCCcchhhhHHHHHHHHHHhCCcEeEEEEccCCCCHHHHHHHHHhcCCceeeecCCCCCCCceecccCCCcc
Q 006111          354 AWMNMGYKQREASPLADLLAFRKVKARLGGRLRLVISGGAPLSTEVEEFLRVTCCAFLVQGYGLTETCGPTTVCFPDEMC  433 (660)
Q Consensus       354 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lr~i~~~G~~l~~~~~~~~~~~~~~~v~~~YG~tE~~~~~~~~~~~~~~  433 (660)
                                      ...++        +|||.+-+||+.+++++.+++...+||.+-+.+||.|.-...+...+....
T Consensus       300 ----------------~~~~L--------sSLrllQVGGarl~~~~Arrv~~~lgC~LQQVFGMAEGLvnyTRLDDp~E~  355 (542)
T COG1021         300 ----------------ERADL--------SSLRLLQVGGARLSATLARRVPAVLGCQLQQVFGMAEGLVNYTRLDDPPEI  355 (542)
T ss_pred             ----------------ccCCc--------hheeEEeecCcccCHHHHhhchhhhCchHHHHhhhhhhhhcccccCCchHh
Confidence                            22223        499999999999999999999999999999999999977666555444444


Q ss_pred             ccCccCCCc-cCeeEEeeecCCCCCCCCCCCCCceEEEccCCcccccCCCchhhhhcc-cCCccccCceEEECCCCcEEE
Q 006111          434 MVGTAGPVS-VYSELRLEEVPEMGYSPLDDPPCGEVCVRGKTLFSGYYKNPDLTRESI-IDGWFHTGDIGQILPNGVVKI  511 (660)
Q Consensus       434 ~~~~~G~~~-~~~~v~ivd~~~~~~~~~~~~~~Gei~v~g~~~~~gy~~~~~~~~~~~-~~g~~~TGDl~~~~~~G~l~~  511 (660)
                      ...+-|+|+ |.-+++|+| .+|+  ++++||.|+|..+||+.++|||+.+..+.++| .+|||+|||+.++|+||++.+
T Consensus       356 i~~TQGrPlsP~DEvrvvD-~dg~--pv~pGE~G~LltRGPYTirGYyrap~HNa~aF~a~GFYrsGD~V~~~~dGyl~V  432 (542)
T COG1021         356 IIHTQGRPLSPDDEVRVVD-ADGN--PVAPGEVGELLTRGPYTIRGYYRAPEHNARAFDADGFYRSGDLVRRDPDGYLVV  432 (542)
T ss_pred             eeecCCCcCCCcceeEEec-CCCC--CCCCCCcceeeecCCeeeeeeccCchhhhhccCcCCceecCceeEecCCceEEE
Confidence            456778886 578999999 7776  56667999999999999999999999999999 999999999999999999999


Q ss_pred             EeccCCeeEcCCCeeecchhHHHHHhcCcCcceEEEEecCCC---CeEEEEEEcChhhHHHHHHHCCCCCcHHHHhccHH
Q 006111          512 IDRKKNLIKISQGEYVALEYLENVYCVAPIIEDIWVYGDSLK---SMLVAVVVPCEEDTKKWAYSNGHAGSFLELCSLVQ  588 (660)
Q Consensus       512 ~GR~~d~i~~~~G~~v~~~~iE~~l~~~p~V~~~~V~~~~~~---~~~~a~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~  588 (660)
                      .||.||+|+ |+|++|..+|||+.|..||.|.+|++++-+|+   +..+|+|+.++...                 ... 
T Consensus       433 ~GR~KDQIN-RgGEKIAAeEvEn~LL~HP~V~~AAlVampDelLGEksCAfiv~~~~~~-----------------~~~-  493 (542)
T COG1021         433 EGRVKDQIN-RGGEKIAAEEVENLLLRHPAVHDAALVAMPDELLGEKSCAFIVVKEPPL-----------------RAA-  493 (542)
T ss_pred             Eeeehhhhc-cccchhhHHHHHHHHhhCchhhhhhhhcCchhhcCcceeEEEEecCCCC-----------------CHH-
Confidence            999999999 79999999999999999999999999998765   69999999998631                 223 


Q ss_pred             HHHHHHHHHHHHHHhCCCCCceeeeEEEEecCCCCCCCCccccccccchHHHHHHHHHH
Q 006111          589 LQNYILSELKNAAERNKLRGFEHIKGVILDPRPFDMERDLVTATLKKKRNKLLIYYQVE  647 (660)
Q Consensus       589 ~~~~~~~~l~~~~~~~~l~~~~~p~~i~~~~~~~~~~~~P~t~~GKv~R~~l~~~~~~~  647 (660)
                             +|++++.+..+..|++|+.|.++      +++|.|+-|||+|++|++++...
T Consensus       494 -------qlr~~L~~~GlAa~K~PDrie~v------~~~P~T~VGKIdKk~Lr~~l~~~  539 (542)
T COG1021         494 -------QLRRFLRERGLAAFKLPDRIEFV------DSLPLTAVGKIDKKALRRRLASR  539 (542)
T ss_pred             -------HHHHHHHHcchhhhcCCcceeec------ccCCCcccccccHHHHHHHhhhh
Confidence                   33444447789999999999997      55699999999999999887643

>PRK13295 cyclohexanecarboxylate-CoA ligase; Reviewed

Probab=100.00  E-value=2.2e-64  Score=558.75  Aligned_cols=504  Identities=23%  Similarity=0.253  Sum_probs=408.1

Q ss_pred             CcHHHHHHHHHHhCCCCCceeeeccccCCCCCceEEeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEeCCchhHHHHHHHH
Q 006111           42 NTAWDIFSMSVQKYPGNRMLGWRPFVDGKFGPYVWKTYKEVYEEVLQIVSALRASGAEPGCRVGIYGANCPQWVEAMEAC  121 (660)
Q Consensus        42 ~ti~~~l~~~a~~~pd~~a~~~~~~~d~~~~~~~~~Ty~ql~~~v~~lA~~L~~~Gl~~gd~V~l~~~n~~e~~~~~lA~  121 (660)
                      .++.+.|++.++.+|+++|+++.   +...+.++++||.||.++++++|++|.+.|+++||+|+++++|++++++++|||
T Consensus        24 ~~l~~~l~~~a~~~p~~~A~~~~---~~~~~~~~~~Ty~el~~~~~~~a~~L~~~g~~~g~~Val~~~n~~e~~~~~la~  100 (547)
T PRK13295         24 RTINDDLDACVASCPDKTAVTAV---RLGTGAPRRFTYRELAALVDRVAVGLARLGVGRGDVVSCQLPNWWEFTVLYLAC  100 (547)
T ss_pred             CCHHHHHHHHHHHCCCceEEEec---CCCccccceeeHHHHHHHHHHHHHHHHHhCCCCCCEEEEECCCChHHHHHHHHH
Confidence            57999999999999999999876   433445679999999999999999999999999999999999999999999999


Q ss_pred             HhCCCeEEecCCCCChhHHHHHHhcccceEEEEccchhh----hhhccccccccCccEEEEecCCcHHHHHHHhhCCcce
Q 006111          122 NALSLICVPLYDTLGPGAVNFILDHAEIDFVFVQDKKVK----ELLSPDCRSAQRLRVMVCFTSLTAEQKEMAVQTGIKP  197 (660)
Q Consensus       122 ~~~G~~~vpl~~~~~~~~l~~~l~~~~~~~ii~~~~~~~----~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~  197 (660)
                      +++|++++|++|.++.+++..+++.++++++|+++....    ............+..++.++...             .
T Consensus       101 ~~~G~~~vpl~~~~~~~~l~~~l~~~~~~~li~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------------~  167 (547)
T PRK13295        101 SRIGAVLNPLMPIFRERELSFMLKHAESKVLVVPKTFRGFDHAAMARRLRPELPALRHVVVVGGDG-------------A  167 (547)
T ss_pred             HhcCcEEeccccccCHHHHHHHHHhcCceEEEEeccccCcchHHHHHHHhhhCCCcceEEEecCCC-------------c
Confidence            999999999999999999999999999999999876421    11111111223444555554321             1


Q ss_pred             eeHHHHHhcCcc-------CCccCCCCCCCceEEEEecCCCCCCCceeeecchhHHHHhhhhhhhcccccCCCCCCcEEE
Q 006111          198 YSWDEFLHLGKV-------NEMEILPPQPFNICTIMYTSGTSGDPKGVVLTHETIATFVSGVDLFLDQFEDKMTVDDVYL  270 (660)
Q Consensus       198 ~~~~~~~~~~~~-------~~~~~~~~~~~~~~~i~~TSGTTG~pK~v~~th~~l~~~~~~~~~~~~~~~~~~~~~~~~l  270 (660)
                      .++.++......       .........++++++++|||||||.||+|+++|.++...+......+     ++..+++++
T Consensus       168 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~i~~TSGTTG~PK~v~~s~~~l~~~~~~~~~~~-----~~~~~~~~l  242 (547)
T PRK13295        168 DSFEALLITPAWEQEPDAPAILARLRPGPDDVTQLIYTSGTTGEPKGVMHTANTLMANIVPYAERL-----GLGADDVIL  242 (547)
T ss_pred             cCHHHHhhCCccccccccccccccCCCCCcceeEEEeCCCCCCCCCEEEeccHHHHHHHHHHHHHh-----CCCCCCeEE
Confidence            133333321100       01112234678999999999999999999999999998888766666     788899999


Q ss_pred             EecChhHHHHHHH-HHHHhhcCcEEEEecC-ChhhHHHHhhhhcCeEEEechHHHHHHHHHHHHHHHhhchHHHHHHHHH
Q 006111          271 SFLPLAHILDRVI-EEYFFRRGASVGYYHG-DLNALRDDLMELKPTLLAGVPRVFEKIHEGIKKALEELRPLRRRIFDAL  348 (660)
Q Consensus       271 ~~~pl~~~~g~~~-~l~~l~~G~~~v~~~~-~~~~~~~~i~~~~~t~~~~~p~~~~~l~~~~~~~~~~~~~~~~~~~~~~  348 (660)
                      +.+|++|..++.. .+.+++.|+++++.+. ++..+++.++++++|++.++|.++..+........              
T Consensus       243 ~~~p~~h~~g~~~~~~~~l~~G~~~~~~~~~~~~~~~~~l~~~~vt~~~~~p~~~~~l~~~~~~~~--------------  308 (547)
T PRK13295        243 MASPMAHQTGFMYGLMMPVMLGATAVLQDIWDPARAAELIRTEGVTFTMASTPFLTDLTRAVKESG--------------  308 (547)
T ss_pred             EecCchhhhhHHHHHHHHHHcCCeEEeCCCCCHHHHHHHHHHcCCcEEEecHHHHHHHHhcccccC--------------
Confidence            9999999998765 6778999999998876 89999999999999999999999988865321100              


Q ss_pred             HHHHHHHHhhCCCCCCcchhhhHHHHHHHHHHhCCcEeEEEEccCCCCHHHHHHHHHhcCCceeeecCCCCCCCceeccc
Q 006111          349 YKYKLAWMNMGYKQREASPLADLLAFRKVKARLGGRLRLVISGGAPLSTEVEEFLRVTCCAFLVQGYGLTETCGPTTVCF  428 (660)
Q Consensus       349 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lr~i~~~G~~l~~~~~~~~~~~~~~~v~~~YG~tE~~~~~~~~~  428 (660)
                                             .        ..+++|.+++||+++++++.+.+.+.+++++++.||+||++.+.+...
T Consensus       309 -----------------------~--------~~~~l~~~~~~G~~l~~~~~~~~~~~~~~~~~~~YG~TE~~~~~~~~~  357 (547)
T PRK13295        309 -----------------------R--------PVSSLRTFLCAGAPIPGALVERARAALGAKIVSAWGMTENGAVTLTKL  357 (547)
T ss_pred             -----------------------C--------CcccceEEEEecCCCCHHHHHHHHHHhCCCeEEeccCCCCCCeeeccC
Confidence                                   0        114899999999999999999999989999999999999988766554


Q ss_pred             CCC-ccccCccCCCccCeeEEeeecCCCCCCCCCCCCCceEEEccCCcccccCCCchhhhhcccCCccccCceEEECCCC
Q 006111          429 PDE-MCMVGTAGPVSVYSELRLEEVPEMGYSPLDDPPCGEVCVRGKTLFSGYYKNPDLTRESIIDGWFHTGDIGQILPNG  507 (660)
Q Consensus       429 ~~~-~~~~~~~G~~~~~~~v~ivd~~~~~~~~~~~~~~Gei~v~g~~~~~gy~~~~~~~~~~~~~g~~~TGDl~~~~~~G  507 (660)
                      ... .....++|.|+++++++|+| +++.  ++..|+.|||+|+|++++.||+++++.+... .+|||+|||+|+++++|
T Consensus       358 ~~~~~~~~~~~G~~~~~~~v~i~d-~~~~--~~~~g~~Gel~v~g~~~~~gY~~~~~~t~~~-~~g~~~TGD~~~~~~~g  433 (547)
T PRK13295        358 DDPDERASTTDGCPLPGVEVRVVD-ADGA--PLPAGQIGRLQVRGCSNFGGYLKRPQLNGTD-ADGWFDTGDLARIDADG  433 (547)
T ss_pred             CCcchhccCccccccCCcEEEEEC-CCCC--CCCCCCCCeEEEEcCcccccccCCccccccC-CCCCeecceEEEEcCCc
Confidence            322 22346889999999999999 6655  4455689999999999999999999887766 68999999999999999


Q ss_pred             cEEEEeccCCeeEcCCCeeecchhHHHHHhcCcCcceEEEEecCCC---CeEEEEEEcChhhHHHHHHHCCCCCcHHHHh
Q 006111          508 VVKIIDRKKNLIKISQGEYVALEYLENVYCVAPIIEDIWVYGDSLK---SMLVAVVVPCEEDTKKWAYSNGHAGSFLELC  584 (660)
Q Consensus       508 ~l~~~GR~~d~i~~~~G~~v~~~~iE~~l~~~p~V~~~~V~~~~~~---~~~~a~v~~~~~~~~~~~~~~~~~~~~~~~~  584 (660)
                      ++++.||.+|+|++ +|.+|+|.+||++|.+|++|.+++|++.++.   +.++++|++.++..          .      
T Consensus       434 ~l~~~gR~~~~i~~-~G~~v~p~~IE~~l~~~~~v~~~~v~~~~~~~~g~~~~~~v~~~~~~~----------~------  496 (547)
T PRK13295        434 YIRISGRSKDVIIR-GGENIPVVEIEALLYRHPAIAQVAIVAYPDERLGERACAFVVPRPGQS----------L------  496 (547)
T ss_pred             eEEEEeccCCeEEE-CCEEECHHHHHHHHHhCCCeeeEEEEeeecCCCCcEEEEEEEeCCCCC----------C------
Confidence            99999999999997 8999999999999999999999999997644   47889998876420          0      


Q ss_pred             ccHHHHHHHHHHHHHHHHhCCCCCceeeeEEEEecCCCCCCCCccccccccchHHHHHHHHH
Q 006111          585 SLVQLQNYILSELKNAAERNKLRGFEHIKGVILDPRPFDMERDLVTATLKKKRNKLLIYYQV  646 (660)
Q Consensus       585 ~~~~~~~~~~~~l~~~~~~~~l~~~~~p~~i~~~~~~~~~~~~P~t~~GKv~R~~l~~~~~~  646 (660)
                      .        .+++.+++.+..++.|++|..+++++      .+|+|++||++|++|++++++
T Consensus       497 ~--------~~~l~~~~~~~~l~~~~~P~~i~~v~------~lP~t~sgK~~r~~L~~~~~~  544 (547)
T PRK13295        497 D--------FEEMVEFLKAQKVAKQYIPERLVVRD------ALPRTPSGKIQKFRLREMLRG  544 (547)
T ss_pred             C--------HHHHHHHHHhccCccccCCcEEEEec------cCCCCCCccccHHHHHHHHhc
Confidence            0        12344444445799999999999874      468999999999999987754

>PRK05857 acyl-CoA synthetase; Validated

Probab=100.00  E-value=1.5e-64  Score=558.53  Aligned_cols=516  Identities=19%  Similarity=0.162  Sum_probs=398.6

Q ss_pred             CCCCCCCCCcHHHHHHHHHHhCCCCCceeeeccccCCCCCceEEeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEeCCchh
Q 006111           34 FPSVDSDLNTAWDIFSMSVQKYPGNRMLGWRPFVDGKFGPYVWKTYKEVYEEVLQIVSALRASGAEPGCRVGIYGANCPQ  113 (660)
Q Consensus        34 ~~~~~~~~~ti~~~l~~~a~~~pd~~a~~~~~~~d~~~~~~~~~Ty~ql~~~v~~lA~~L~~~Gl~~gd~V~l~~~n~~e  113 (660)
                      +..++..+.++.+.|.+.|+++|+++|+++.   ++.    +++||+||.++++++|+.|.+.|+++||+|+++++|+++
T Consensus         6 ~~~~~~~~~~~~~~l~~~a~~~p~~~a~~~~---~~~----~~~Ty~el~~~~~~~a~~L~~~g~~~g~~V~i~~~~~~e   78 (540)
T PRK05857          6 FQAMPQLPSTVLDRVFEQARQQPEAIALRRC---DGT----SALRYRELVAEVGGLAADLRAQSVSRGSRVLVISDNGPE   78 (540)
T ss_pred             ccccccCCcchHHHHHHHHhhCCCcEEEeec---CCC----ceeeHHHHHHHHHHHHHHHHHhCcCCCCEEEEEcCCCHH
Confidence            4467778889999999999999999999865   432    579999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHhCCCeEEecCCCCChhHHHHHHhcccceEEEEccchhhhhhccccccccCccEEEEecCCcHHHHHHHhhC
Q 006111          114 WVEAMEACNALSLICVPLYDTLGPGAVNFILDHAEIDFVFVQDKKVKELLSPDCRSAQRLRVMVCFTSLTAEQKEMAVQT  193 (660)
Q Consensus       114 ~~~~~lA~~~~G~~~vpl~~~~~~~~l~~~l~~~~~~~ii~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~  193 (660)
                      +++++|||+++|++++|+++.++.+++..+++.++++++|+++...... ..+........ ++..+.....        
T Consensus        79 ~~~~~lA~~~~G~v~v~l~~~~~~~~l~~~~~~~~~~~ii~~~~~~~~~-~~~~~~~~~~~-~~~~~~~~~~--------  148 (540)
T PRK05857         79 TYLSVLACAKLGAIAVMADGNLPIAAIERFCQITDPAAALVAPGSKMAS-SAVPEALHSIP-VIAVDIAAVT--------  148 (540)
T ss_pred             HHHHHHHHHHcCeEEEecCccCCHHHHHHHHHhcCCceEEEeccchhcc-ccccccccccc-eeEeeccccc--------
Confidence            9999999999999999999999999999999999999999987653211 11111111111 2222211100        


Q ss_pred             CcceeeHHHHHhcCccCCccCCCCCCCceEEEEecCCCCCCCceeeecchhHHHHhhhhhhhcccccCCCCCCcEEEEec
Q 006111          194 GIKPYSWDEFLHLGKVNEMEILPPQPFNICTIMYTSGTSGDPKGVVLTHETIATFVSGVDLFLDQFEDKMTVDDVYLSFL  273 (660)
Q Consensus       194 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~TSGTTG~pK~v~~th~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~  273 (660)
                      .    .+......  ..........++++++++|||||||.||+|.++|+++.+......... ........++++++.+
T Consensus       149 ~----~~~~~~~~--~~~~~~~~~~~~~~a~i~~TSGTTG~PKgV~~sh~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~  221 (540)
T PRK05857        149 R----ESEHSLDA--ASLAGNADQGSEDPLAMIFTSGTTGEPKAVLLANRTFFAVPDILQKEG-LNWVTWVVGETTYSPL  221 (540)
T ss_pred             c----cccccccc--cccccccCCCCCCeEEEEeCCCCCCCCCeEEEechhhhhhhHHhhhcc-ccccccccCceeeecC
Confidence            0    00000000  001112334678999999999999999999999999987654322110 0001345678999999


Q ss_pred             ChhHHHHHHHHHHHhhcCcEEEEecCChhhHHHHhhhhcCeEEEechHHHHHHHHHHHHHHHhhchHHHHHHHHHHHHHH
Q 006111          274 PLAHILDRVIEEYFFRRGASVGYYHGDLNALRDDLMELKPTLLAGVPRVFEKIHEGIKKALEELRPLRRRIFDALYKYKL  353 (660)
Q Consensus       274 pl~~~~g~~~~l~~l~~G~~~v~~~~~~~~~~~~i~~~~~t~~~~~p~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~  353 (660)
                      |++|..++...+.+++.|+++++.+.++..+++.|+++++|+++++|.+++.+.+......                   
T Consensus       222 p~~h~~~l~~~~~~l~~G~~~v~~~~~~~~~~~~i~~~~it~~~~~P~~~~~l~~~~~~~~-------------------  282 (540)
T PRK05857        222 PATHIGGLWWILTCLMHGGLCVTGGENTTSLLEILTTNAVATTCLVPTLLSKLVSELKSAN-------------------  282 (540)
T ss_pred             CccccchHHHHHHHhhcceeEEecCCChhHHHHHHHhcCcceEEeChHHHHHHHhccccCC-------------------
Confidence            9999999887788899999987765688999999999999999999999998865321100                   


Q ss_pred             HHHhhCCCCCCcchhhhHHHHHHHHHHhCCcEeEEEEccCCCCHHHHHHHHHhcCCceeeecCCCCCCCceecccCCC--
Q 006111          354 AWMNMGYKQREASPLADLLAFRKVKARLGGRLRLVISGGAPLSTEVEEFLRVTCCAFLVQGYGLTETCGPTTVCFPDE--  431 (660)
Q Consensus       354 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lr~i~~~G~~l~~~~~~~~~~~~~~~v~~~YG~tE~~~~~~~~~~~~--  431 (660)
                                        .        ..+++|.+++||++++....+++ +.+|+++++.||+||++......+...  
T Consensus       283 ------------------~--------~~~~lr~~~~gG~~~~~~~~~~~-~~~g~~i~~~YG~TE~~~~~~~~~~~~~~  335 (540)
T PRK05857        283 ------------------A--------TVPSLRLVGYGGSRAIAADVRFI-EATGVRTAQVYGLSETGCTALCLPTDDGS  335 (540)
T ss_pred             ------------------C--------cCccceEEEEcCccCCchhHHHH-HHhCCeeecccCCCcCCceeeeccccccc
Confidence                              0        11489999999999998877644 467999999999999986544333221  


Q ss_pred             --ccccCccCCCccCeeEEeeecCCCCCCC----CCCCCCceEEEccCCcccccCCCchhhhhcccCCccccCceEEECC
Q 006111          432 --MCMVGTAGPVSVYSELRLEEVPEMGYSP----LDDPPCGEVCVRGKTLFSGYYKNPDLTRESIIDGWFHTGDIGQILP  505 (660)
Q Consensus       432 --~~~~~~~G~~~~~~~v~ivd~~~~~~~~----~~~~~~Gei~v~g~~~~~gy~~~~~~~~~~~~~g~~~TGDl~~~~~  505 (660)
                        ....+++|+|++|++++|++ +++....    .+.++.|||+|+|+.++.||+++++.+.+.|.+|||+|||+|++|+
T Consensus       336 ~~~~~~~~~G~~~~g~~v~i~d-~~~~~~~~~~~~~~~~~Gel~v~g~~~~~GY~~~~~~t~~~~~~g~~~TGDlg~~d~  414 (540)
T PRK05857        336 IVKIEAGAVGRPYPGVDVYLAA-TDGIGPTAPGAGPSASFGTLWIKSPANMLGYWNNPERTAEVLIDGWVNTGDLLERRE  414 (540)
T ss_pred             ccccccCCcCcccCCcEEEEEC-ccccCccccccCCCCCcceEEEeCcchhhhhhCCccchhhhcCCCceeccceEEEcC
Confidence              12347899999999999998 6554221    1346789999999999999999999999999999999999999999


Q ss_pred             CCcEEEEeccCCeeEcCCCeeecchhHHHHHhcCcCcceEEEEecCCC---CeEEEEEEcChhhHHHHHHHCCCCCcHHH
Q 006111          506 NGVVKIIDRKKNLIKISQGEYVALEYLENVYCVAPIIEDIWVYGDSLK---SMLVAVVVPCEEDTKKWAYSNGHAGSFLE  582 (660)
Q Consensus       506 ~G~l~~~GR~~d~i~~~~G~~v~~~~iE~~l~~~p~V~~~~V~~~~~~---~~~~a~v~~~~~~~~~~~~~~~~~~~~~~  582 (660)
                      +|++++.||.+|+|++ +|.+|+|.+||++|..||+|.+|+|++.++.   +.++++++..+..                
T Consensus       415 ~g~l~~~GR~~~~ik~-~G~~v~p~eIE~~l~~~~~V~~~~v~~~~~~~~~~~~~~~vv~~~~~----------------  477 (540)
T PRK05857        415 DGFFYIKGRSSEMIIC-GGVNIAPDEVDRIAEGVSGVREAACYEIPDEEFGALVGLAVVASAEL----------------  477 (540)
T ss_pred             CceEEEeccccccEec-CCEEECHHHHHHHHHhCCCeeEEEEEecCccccccceEEEEEeCCCC----------------
Confidence            9999999999999997 8999999999999999999999999997754   3666666665431                


Q ss_pred             HhccHHHHHHHHHHHHHHHHhCCCCCceeeeEEEEecCCCCCCCCccccccccchHHHHHHHHHH
Q 006111          583 LCSLVQLQNYILSELKNAAERNKLRGFEHIKGVILDPRPFDMERDLVTATLKKKRNKLLIYYQVE  647 (660)
Q Consensus       583 ~~~~~~~~~~~~~~l~~~~~~~~l~~~~~p~~i~~~~~~~~~~~~P~t~~GKv~R~~l~~~~~~~  647 (660)
                         +....+.+.+.+.+.++ ..+++|++|+.+.+++      .+|+|++||++|++|++.+.+.
T Consensus       478 ---~~~~~~~l~~~~~~~~~-~~l~~~~~P~~v~~~~------~iP~t~~GKi~r~~l~~~~~~~  532 (540)
T PRK05857        478 ---DESAARALKHTIAARFR-RESEPMARPSTIVIVT------DIPRTQSGKVMRASLAAAATAD  532 (540)
T ss_pred             ---ChhhHHHHHHHHHHHHH-hhhccccCCeEEEEhh------cCCCCCCcceeHHHHHHhhhhc
Confidence               11112334455555554 6799999999999874      4589999999999999888754

>PRK10524 prpE propionyl-CoA synthetase; Provisional

Probab=100.00  E-value=2.1e-64  Score=567.83  Aligned_cols=524  Identities=16%  Similarity=0.153  Sum_probs=404.2

Q ss_pred             CCcHHHHHHHHHHhCCCCCceeeeccccCCCCCceEEeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEeCCchhHHHHHHH
Q 006111           41 LNTAWDIFSMSVQKYPGNRMLGWRPFVDGKFGPYVWKTYKEVYEEVLQIVSALRASGAEPGCRVGIYGANCPQWVEAMEA  120 (660)
Q Consensus        41 ~~ti~~~l~~~a~~~pd~~a~~~~~~~d~~~~~~~~~Ty~ql~~~v~~lA~~L~~~Gl~~gd~V~l~~~n~~e~~~~~lA  120 (660)
                      .|...++|+++++.+|+++|+++.   +..++..+.+||+||.++++++|++|.+.|+++||+|+++++|++++++++||
T Consensus        52 ~n~~~~~l~~~~~~~p~~~A~~~~---~~~~~~~~~~Ty~eL~~~v~~lA~~L~~~Gv~~gd~V~i~~~n~~e~~~~~lA  128 (629)
T PRK10524         52 TNLCHNAVDRHLAKRPEQLALIAV---STETDEERTYTFRQLHDEVNRMAAMLRSLGVQRGDRVLIYMPMIAEAAFAMLA  128 (629)
T ss_pred             eeHHHHHHHHhhccCCCCeEEEEE---cCCCCceEEEeHHHHHHHHHHHHHHHHHcCCCCCCEEEEECCCCHHHHHHHHH
Confidence            455688898888899999999885   33334457899999999999999999999999999999999999999999999


Q ss_pred             HHhCCCeEEecCCCCChhHHHHHHhcccceEEEEccchh---------hhhhccccccccCccEEEEecCCcHHHHHHHh
Q 006111          121 CNALSLICVPLYDTLGPGAVNFILDHAEIDFVFVQDKKV---------KELLSPDCRSAQRLRVMVCFTSLTAEQKEMAV  191 (660)
Q Consensus       121 ~~~~G~~~vpl~~~~~~~~l~~~l~~~~~~~ii~~~~~~---------~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~  191 (660)
                      |+++|++++|+++.++.+++..+|++++++++|+++...         ..+.+...........++.++......    .
T Consensus       129 ~~~~Gav~v~~~~~~~~~~l~~~l~~~~~~~li~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vi~~~~~~~~~----~  204 (629)
T PRK10524        129 CARIGAIHSVVFGGFASHSLAARIDDAKPVLIVSADAGSRGGKVVPYKPLLDEAIALAQHKPRHVLLVDRGLAPM----A  204 (629)
T ss_pred             HHHhCcEEEeeCCCCCHHHHHHHHHhcCCcEEEEccCcccCCcccccHHHHHHHHHhcCCCCCEEEEEeCCCCCc----C
Confidence            999999999999999999999999999999999976432         111111111111233444444211000    0


Q ss_pred             hCCcceeeHHHHHhcCccCCccCCCCCCCceEEEEecCCCCCCCceeeecchhHHHHhhh-hhhhcccccCCCCCCcEEE
Q 006111          192 QTGIKPYSWDEFLHLGKVNEMEILPPQPFNICTIMYTSGTSGDPKGVVLTHETIATFVSG-VDLFLDQFEDKMTVDDVYL  270 (660)
Q Consensus       192 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~TSGTTG~pK~v~~th~~l~~~~~~-~~~~~~~~~~~~~~~~~~l  270 (660)
                      ........+.++.........+.....++++++++|||||||.||+|+++|.+++..... +...+     ++..+|+++
T Consensus       205 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~a~il~TSGTTG~PKgV~~~~~~~~~~~~~~~~~~~-----~~~~~d~~~  279 (629)
T PRK10524        205 RVAGRDVDYATLRAQHLGARVPVEWLESNEPSYILYTSGTTGKPKGVQRDTGGYAVALATSMDTIF-----GGKAGETFF  279 (629)
T ss_pred             cccCCcccHHHHHhcCCCCCCCceeeCCCCceEEEeecCCCCCCceEEECCcHHHHHHHHHHHHhc-----CCCCCCEEE
Confidence            000112345555443222222223346789999999999999999999999987654433 33333     678899999


Q ss_pred             EecChhHHHHHHH-HHHHhhcCcEEEEecC-----ChhhHHHHhhhhcCeEEEechHHHHHHHHHHHHHHHhhchHHHHH
Q 006111          271 SFLPLAHILDRVI-EEYFFRRGASVGYYHG-----DLNALRDDLMELKPTLLAGVPRVFEKIHEGIKKALEELRPLRRRI  344 (660)
Q Consensus       271 ~~~pl~~~~g~~~-~l~~l~~G~~~v~~~~-----~~~~~~~~i~~~~~t~~~~~p~~~~~l~~~~~~~~~~~~~~~~~~  344 (660)
                      +..|+.|..++.. ++.+++.|+++++.++     ++..+++.|+++++|+++++|++++.|.+....            
T Consensus       280 ~~~~~~~~~~~~~~~~~~l~~G~~~v~~~g~~~~~~~~~~~~~i~~~~vt~~~~~P~~~~~l~~~~~~------------  347 (629)
T PRK10524        280 CASDIGWVVGHSYIVYAPLLAGMATIMYEGLPTRPDAGIWWRIVEKYKVNRMFSAPTAIRVLKKQDPA------------  347 (629)
T ss_pred             EcCCCCeeccchHHHHHHHhCCCEEEEECCCCCCCChHHHHHHHHHcCceEEEeCHHHHHHHHhcCcc------------
Confidence            9999999887654 6778999999998763     678999999999999999999999887542110            


Q ss_pred             HHHHHHHHHHHHhhCCCCCCcchhhhHHHHHHHHHHhCCcEeEEEEccCCCCHHHHHHHHHhcCCceeeecCCCCCCCce
Q 006111          345 FDALYKYKLAWMNMGYKQREASPLADLLAFRKVKARLGGRLRLVISGGAPLSTEVEEFLRVTCCAFLVQGYGLTETCGPT  424 (660)
Q Consensus       345 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lr~i~~~G~~l~~~~~~~~~~~~~~~v~~~YG~tE~~~~~  424 (660)
                                             .....++        ++||.+++||+++++++.+++.+.+++++++.||+||++..+
T Consensus       348 -----------------------~~~~~~l--------~~lr~i~~~Ge~l~~~~~~~~~~~~~~~v~~~YG~TE~~~~~  396 (629)
T PRK10524        348 -----------------------LLRKHDL--------SSLRALFLAGEPLDEPTASWISEALGVPVIDNYWQTETGWPI  396 (629)
T ss_pred             -----------------------cccccCh--------hheeEEEEeCCCCCHHHHHHHHHhcCCCeEeccccccccchh
Confidence                                   0011112        489999999999999999999999999999999999998543


Q ss_pred             ecccCC---CccccCccCCCccCeeEEeeecC-CCCCCCCCCCCCceEEEccC---CcccccCCCchhhhhcc----cCC
Q 006111          425 TVCFPD---EMCMVGTAGPVSVYSELRLEEVP-EMGYSPLDDPPCGEVCVRGK---TLFSGYYKNPDLTRESI----IDG  493 (660)
Q Consensus       425 ~~~~~~---~~~~~~~~G~~~~~~~v~ivd~~-~~~~~~~~~~~~Gei~v~g~---~~~~gy~~~~~~~~~~~----~~g  493 (660)
                      ......   .....+++|.|+++++++|+| + ++..  ++.|+.|||+++||   +++.+|+++++...+.+    .+|
T Consensus       397 ~~~~~~~~~~~~~~~~~G~p~~g~~~~i~d-~~~g~~--~~~g~~Gel~i~gp~~~~~~~~~~~~~~~~~~~~~~~~~~~  473 (629)
T PRK10524        397 LAIARGVEDRPTRLGSPGVPMYGYNVKLLN-EVTGEP--CGPNEKGVLVIEGPLPPGCMQTVWGDDDRFVKTYWSLFGRQ  473 (629)
T ss_pred             hcCCCCcccCcCCCCCcccCcCCceEEEEe-CCCCCC--CCCCCcEEEEEcCCCChhhcCCccCChHHHHHhhhccCCCc
Confidence            322221   123357899999999999999 6 5543  45668999999998   57889999987766543    468


Q ss_pred             ccccCceEEECCCCcEEEEeccCCeeEcCCCeeecchhHHHHHhcCcCcceEEEEecCCC---CeEEEEEEcChhhHHHH
Q 006111          494 WFHTGDIGQILPNGVVKIIDRKKNLIKISQGEYVALEYLENVYCVAPIIEDIWVYGDSLK---SMLVAVVVPCEEDTKKW  570 (660)
Q Consensus       494 ~~~TGDl~~~~~~G~l~~~GR~~d~i~~~~G~~v~~~~iE~~l~~~p~V~~~~V~~~~~~---~~~~a~v~~~~~~~~~~  570 (660)
                      ||+|||+|++|+||.++++||.||+|++ +|++|+|.+||++|.+||+|.+|+|++.+++   +.++++|+++++..   
T Consensus       474 ~~~TGDl~~~d~dG~l~i~GR~dd~i~~-~G~ri~p~eIE~~l~~~p~V~e~~vvg~~d~~~g~~~~~~vv~~~~~~---  549 (629)
T PRK10524        474 VYSTFDWGIRDADGYYFILGRTDDVINV-AGHRLGTREIEESISSHPAVAEVAVVGVKDALKGQVAVAFVVPKDSDS---  549 (629)
T ss_pred             EEEcCCcEEEcCCCcEEEEEEecCeEEe-CCEEeCHHHHHHHHHhCCCcceEEEEccccCCCCeEEEEEEEECCCCc---
Confidence            9999999999999999999999999997 7999999999999999999999999998765   48899999876421   


Q ss_pred             HHHCCCCCcHHHHhccHHHHHHHHHHHHHHHHhCCCCCceeeeEEEEecCCCCCCCCccccccccchHHHHHHHHH
Q 006111          571 AYSNGHAGSFLELCSLVQLQNYILSELKNAAERNKLRGFEHIKGVILDPRPFDMERDLVTATLKKKRNKLLIYYQV  646 (660)
Q Consensus       571 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~l~~~~~p~~i~~~~~~~~~~~~P~t~~GKv~R~~l~~~~~~  646 (660)
                           .        .+.+....+.++|+++++ ..|+.|++|..|++++      .+|+|++||++|+.|++.+..
T Consensus       550 -----~--------~~~~~~~~~~~~i~~~~~-~~l~~~~~P~~i~~v~------~lP~T~sGKi~R~~L~~~~~~  605 (629)
T PRK10524        550 -----L--------ADREARLALEKEIMALVD-SQLGAVARPARVWFVS------ALPKTRSGKLLRRAIQAIAEG  605 (629)
T ss_pred             -----c--------ccccchHHHHHHHHHHHH-hhcCCCcCCCEEEEcC------CCCCCCCcchHHHHHHHHHcC
Confidence                 0        111223345566666665 7899999999999874      468999999999999987643

>PRK03584 acetoacetyl-CoA synthetase; Provisional

Probab=100.00  E-value=3.9e-64  Score=567.50  Aligned_cols=518  Identities=20%  Similarity=0.184  Sum_probs=399.1

Q ss_pred             CCCCCCCcHHHHHHHHHHhCCCCCceeeeccccCCCCCceEEeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEeCCchhHH
Q 006111           36 SVDSDLNTAWDIFSMSVQKYPGNRMLGWRPFVDGKFGPYVWKTYKEVYEEVLQIVSALRASGAEPGCRVGIYGANCPQWV  115 (660)
Q Consensus        36 ~~~~~~~ti~~~l~~~a~~~pd~~a~~~~~~~d~~~~~~~~~Ty~ql~~~v~~lA~~L~~~Gl~~gd~V~l~~~n~~e~~  115 (660)
                      +.+...-|+.+.+..+  .+|+++|+++.   + ..+..+++||+||.+++.++|+.|++.|+++||+|+++++|+++++
T Consensus        80 wf~~~~~n~~~~~~~~--~~~~~~Al~~~---~-~~~~~~~~Ty~eL~~~v~~lA~~L~~~Gv~~gd~V~i~~~n~~e~v  153 (655)
T PRK03584         80 WFPGARLNYAENLLRH--RRDDRPAIIFR---G-EDGPRRELSWAELRRQVAALAAALRALGVGPGDRVAAYLPNIPETV  153 (655)
T ss_pred             eCCCCEeeHHHHhhcc--CCCCCeEEEEE---C-CCCceEEEeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEcCCCHHHH
Confidence            5555556666655543  58999999986   3 3445689999999999999999999999999999999999999999


Q ss_pred             HHHHHHHhCCCeEEecCCCCChhHHHHHHhcccceEEEEccchhh---------hhhccccccccCccEEEEecCCcHHH
Q 006111          116 EAMEACNALSLICVPLYDTLGPGAVNFILDHAEIDFVFVQDKKVK---------ELLSPDCRSAQRLRVMVCFTSLTAEQ  186 (660)
Q Consensus       116 ~~~lA~~~~G~~~vpl~~~~~~~~l~~~l~~~~~~~ii~~~~~~~---------~~~~~~~~~~~~~~~i~~~~~~~~~~  186 (660)
                      +++|||+++|++++|+++.++.+++..+|+.++++++|+++....         .+.+ .......+..++.++......
T Consensus       154 ~~~lA~~~~Gav~v~l~~~~~~~~l~~~l~~~~~~~li~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~i~~~~~~~~~  232 (655)
T PRK03584        154 VAMLATASLGAIWSSCSPDFGVQGVLDRFGQIEPKVLIAVDGYRYGGKAFDRRAKVAE-LRAALPSLEHVVVVPYLGPAA  232 (655)
T ss_pred             HHHHHHHHcCcEEEeeCCCCCHHHHHHHHHHcCCcEEEEccccccCCcccchHHHHHH-HHhcCCCccEEEEEecCCCcc
Confidence            999999999999999999999999999999999999999875321         1111 111223334455444221000


Q ss_pred             HHHHhhCCcceeeHHHHHhcCccCCccCCCCCCCceEEEEecCCCCCCCceeeecchhHHHH-hhhhhhhcccccCCCCC
Q 006111          187 KEMAVQTGIKPYSWDEFLHLGKVNEMEILPPQPFNICTIMYTSGTSGDPKGVVLTHETIATF-VSGVDLFLDQFEDKMTV  265 (660)
Q Consensus       187 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~TSGTTG~pK~v~~th~~l~~~-~~~~~~~~~~~~~~~~~  265 (660)
                         ..........|.++...............++++++|+|||||||.||||++||.+++.. +......+     ++..
T Consensus       233 ---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~ilyTSGTTG~PKgV~~sh~~~~~~~~~~~~~~~-----~~~~  304 (655)
T PRK03584        233 ---AAAALPGALLWEDFLAPAEAAELEFEPVPFDHPLWILYSSGTTGLPKCIVHGHGGILLEHLKELGLHC-----DLGP  304 (655)
T ss_pred             ---cccccCCcccHHHHhhccccCCCCceecCCCCcEEEEecCCCCCCCceEEECccHHHHHHHHHHHHhc-----CCCC
Confidence               00011123456666552222222234556799999999999999999999999987543 44444444     7888


Q ss_pred             CcEEEEecChhHHHHHHHHHHHhhcCcEEEEecC-----ChhhHHHHhhhhcCeEEEechHHHHHHHHHHHHHHHhhchH
Q 006111          266 DDVYLSFLPLAHILDRVIEEYFFRRGASVGYYHG-----DLNALRDDLMELKPTLLAGVPRVFEKIHEGIKKALEELRPL  340 (660)
Q Consensus       266 ~~~~l~~~pl~~~~g~~~~l~~l~~G~~~v~~~~-----~~~~~~~~i~~~~~t~~~~~p~~~~~l~~~~~~~~~~~~~~  340 (660)
                      +|++++..++.|..+. ..+.+++.|+++++.++     ++..+++.++++++|++.++|+++..+.+...         
T Consensus       305 ~d~~~~~~~~~~~~~~-~~~~~L~~G~t~vl~~~~~~~~~~~~~~~~i~~~~vt~~~~~P~~~~~l~~~~~---------  374 (655)
T PRK03584        305 GDRFFWYTTCGWMMWN-WLVSGLLVGATLVLYDGSPFYPDPNVLWDLAAEEGVTVFGTSAKYLDACEKAGL---------  374 (655)
T ss_pred             CCEEEEcCCchHHhHH-HHHHHHHcCCEEEEeCCCCCCCCHHHHHHHHHHHCCEEEEcCHHHHHHHHhcCC---------
Confidence            9999999999887543 35678999999999753     78999999999999999999999988754200         


Q ss_pred             HHHHHHHHHHHHHHHHhhCCCCCCcchhhhHHHHHHHHHHhCCcEeEEEEccCCCCHHHHHHHHHhc--CCceeeecCCC
Q 006111          341 RRRIFDALYKYKLAWMNMGYKQREASPLADLLAFRKVKARLGGRLRLVISGGAPLSTEVEEFLRVTC--CAFLVQGYGLT  418 (660)
Q Consensus       341 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lr~i~~~G~~l~~~~~~~~~~~~--~~~v~~~YG~t  418 (660)
                                               .+ ....++        ++||.+++||+++++++.+++.+.+  +..+++.||+|
T Consensus       375 -------------------------~~-~~~~~l--------~sLr~i~~~Ge~l~~~~~~~~~~~~~~~~~~~~~yG~T  420 (655)
T PRK03584        375 -------------------------VP-GETHDL--------SALRTIGSTGSPLPPEGFDWVYEHVKADVWLASISGGT  420 (655)
T ss_pred             -------------------------Cc-cccCCh--------hheEEEEEecCCCCHHHHHHHHHHhCCCceEEeccChH
Confidence                                     00 001122        4899999999999999999999887  47899999999


Q ss_pred             CCCCceecccCCCccccCccCCCccCeeEEeeecCCCCCCCCCCCCCceEEEccC--CcccccCCCchhhh--hc-c--c
Q 006111          419 ETCGPTTVCFPDEMCMVGTAGPVSVYSELRLEEVPEMGYSPLDDPPCGEVCVRGK--TLFSGYYKNPDLTR--ES-I--I  491 (660)
Q Consensus       419 E~~~~~~~~~~~~~~~~~~~G~~~~~~~v~ivd~~~~~~~~~~~~~~Gei~v~g~--~~~~gy~~~~~~~~--~~-~--~  491 (660)
                      |+++.+...........+++|.|++|++++|+| +++..+   .++.|||+|+||  +++.||+++++.++  .. |  .
T Consensus       421 E~~~~~~~~~~~~~~~~g~~g~p~~g~~~~ivd-~~g~~~---~g~~GeL~v~gp~p~~~~gy~~~~~~~~~~~~~~~~~  496 (655)
T PRK03584        421 DICSCFVGGNPLLPVYRGEIQCRGLGMAVEAWD-EDGRPV---VGEVGELVCTKPFPSMPLGFWNDPDGSRYRDAYFDTF  496 (655)
T ss_pred             hhhcccccCCCCCCcCCCccCCCcCCceeEEEC-CCCCCC---CCCceEEEEccCCCCCcceeeCCCccchHHHhhhccC
Confidence            987654433322233458899999999999999 776644   468999999996  78999999987543  22 2  2


Q ss_pred             CCccccCceEEECCCCcEEEEeccCCeeEcCCCeeecchhHHHHHhcCcCcceEEEEecCCC---CeEEEEEEcChhhHH
Q 006111          492 DGWFHTGDIGQILPNGVVKIIDRKKNLIKISQGEYVALEYLENVYCVAPIIEDIWVYGDSLK---SMLVAVVVPCEEDTK  568 (660)
Q Consensus       492 ~g~~~TGDl~~~~~~G~l~~~GR~~d~i~~~~G~~v~~~~iE~~l~~~p~V~~~~V~~~~~~---~~~~a~v~~~~~~~~  568 (660)
                      +|||+|||+|++|+||.++++||.||+|++ +|++|+|.|||++|.+||.|.+|+|++.+++   +.++++|+++++.. 
T Consensus       497 ~g~~~TGDl~~~d~dG~l~i~GR~dd~Ik~-~G~rI~p~EIE~~l~~~p~V~ea~vvg~~~~~~g~~~~a~vv~~~~~~-  574 (655)
T PRK03584        497 PGVWRHGDWIEITEHGGVVIYGRSDATLNR-GGVRIGTAEIYRQVEALPEVLDSLVIGQEWPDGDVRMPLFVVLAEGVT-  574 (655)
T ss_pred             CCEeecCCeEEECCCCeEEEEeeccCeeec-CcEEECHHHHHHHHHhCCCcceEEEEeeEcCCCCEEEEEEEEECCCCC-
Confidence            689999999999999999999999999996 8999999999999999999999999997763   48999999886520 


Q ss_pred             HHHHHCCCCCcHHHHhccHHHHHHHHHHHHHHHHhCCCCCceeeeEEEEecCCCCCCCCccccccccchHHHHHHHH
Q 006111          569 KWAYSNGHAGSFLELCSLVQLQNYILSELKNAAERNKLRGFEHIKGVILDPRPFDMERDLVTATLKKKRNKLLIYYQ  645 (660)
Q Consensus       569 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~l~~~~~p~~i~~~~~~~~~~~~P~t~~GKv~R~~l~~~~~  645 (660)
                                      .+    ..+.++|+++++ .+|+.|++|..|++++      .+|+|++||++|+.|++.+.
T Consensus       575 ----------------~~----~~~~~~l~~~~~-~~L~~~~~P~~i~~v~------~lP~t~sGKi~r~~lr~~~~  624 (655)
T PRK03584        575 ----------------LD----DALRARIRTTIR-TNLSPRHVPDKIIAVP------DIPRTLSGKKVELPVKKLLH  624 (655)
T ss_pred             ----------------Cc----HHHHHHHHHHHH-hhCCCCcCCCEEEECC------CCCCCCCccchHHHHHHHHc
Confidence                            11    223445556655 7899999999999874      46899999999999998874

>PRK09274 peptide synthase; Provisional

Probab=100.00  E-value=7.4e-64  Score=555.66  Aligned_cols=506  Identities=20%  Similarity=0.193  Sum_probs=391.7

Q ss_pred             CCCcHHHHHHHHHHhCCCCCceeeeccccCCC----CCceEEeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEeCCchhHH
Q 006111           40 DLNTAWDIFSMSVQKYPGNRMLGWRPFVDGKF----GPYVWKTYKEVYEEVLQIVSALRASGAEPGCRVGIYGANCPQWV  115 (660)
Q Consensus        40 ~~~ti~~~l~~~a~~~pd~~a~~~~~~~d~~~----~~~~~~Ty~ql~~~v~~lA~~L~~~Gl~~gd~V~l~~~n~~e~~  115 (660)
                      ...++.+.|...++++|+++|+++.   ++.+    ..++++||+||.++++++|++|.+.|+++||+|+++++|+++++
T Consensus         4 ~~~~~~~~l~~~a~~~p~~~a~~~~---~~~~~~~~~~~~~~Ty~~l~~~~~~~A~~L~~~g~~~gd~V~~~~~n~~~~~   80 (552)
T PRK09274          4 SMANIARHLPRAAQERPDQLAVAVP---GGRGADGKLAYDELSFAELDARSDAIAHGLNAAGIGRGMRAVLMVTPSLEFF   80 (552)
T ss_pred             hhhhHHHHHHHHHHhCCCcceEEec---cCCCCccccccCcccHHHHHHHHHHHHHHHHHcCCCCCCEEEEEeCCcHHHH
Confidence            3467889999999999999999875   3311    22457999999999999999999999999999999999999999


Q ss_pred             HHHHHHHhCCCeEEecCCCCChhHHHHHHhcccceEEEEccc--hhhhhhccccccccCccEEEEecCCcHHHHHHHhhC
Q 006111          116 EAMEACNALSLICVPLYDTLGPGAVNFILDHAEIDFVFVQDK--KVKELLSPDCRSAQRLRVMVCFTSLTAEQKEMAVQT  193 (660)
Q Consensus       116 ~~~lA~~~~G~~~vpl~~~~~~~~l~~~l~~~~~~~ii~~~~--~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~  193 (660)
                      +++|||+++|++++|++|.++.+++..+++.++++++|++..  ....+....   ......++.++...          
T Consensus        81 ~~~la~~~~G~~~v~l~~~~~~~~l~~~l~~~~~~~~i~~~~~~~~~~~~~~~---~~~~~~~i~~~~~~----------  147 (552)
T PRK09274         81 ALTFALFKAGAVPVLVDPGMGIKNLKQCLAEAQPDAFIGIPKAHLARRLFGWG---KPSVRRLVTVGGRL----------  147 (552)
T ss_pred             HHHHHHHHcCeEEEEcCCCccHHHHHHHHHhcCCCEEEeccHHHHHHHHhccC---ccchhheecccccc----------
Confidence            999999999999999999999999999999999999998752  222111110   01122233222110          


Q ss_pred             CcceeeHHHHHhcCccCCccCCCCCCCceEEEEecCCCCCCCceeeecchhHHHHhhhhhhhcccccCCCCCCcEEEEec
Q 006111          194 GIKPYSWDEFLHLGKVNEMEILPPQPFNICTIMYTSGTSGDPKGVVLTHETIATFVSGVDLFLDQFEDKMTVDDVYLSFL  273 (660)
Q Consensus       194 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~TSGTTG~pK~v~~th~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~  273 (660)
                      ......+.++...............++++++++|||||||.||+|+++|+++...+......+     ++..+++.++.+
T Consensus       148 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~i~~TSGTTG~PK~v~~s~~~l~~~~~~~~~~~-----~~~~~~~~~~~~  222 (552)
T PRK09274        148 LWGGTTLATLLRDGAAAPFPMADLAPDDMAAILFTSGSTGTPKGVVYTHGMFEAQIEALREDY-----GIEPGEIDLPTF  222 (552)
T ss_pred             ccCCccHHHhcccCccccCCCCCCCCCCeEEEEECCCCCCCCceEEecHHHHHHHHHHHHHHh-----CCCCCceeeecc
Confidence            001123444432211122222345678999999999999999999999999999888777666     788899999999


Q ss_pred             ChhHHHHHHHHHHHhhcCcEEEEec--------CChhhHHHHhhhhcCeEEEechHHHHHHHHHHHHHHHhhchHHHHHH
Q 006111          274 PLAHILDRVIEEYFFRRGASVGYYH--------GDLNALRDDLMELKPTLLAGVPRVFEKIHEGIKKALEELRPLRRRIF  345 (660)
Q Consensus       274 pl~~~~g~~~~l~~l~~G~~~v~~~--------~~~~~~~~~i~~~~~t~~~~~p~~~~~l~~~~~~~~~~~~~~~~~~~  345 (660)
                      |++|.+++       ..|+++++..        .++..+++.|+++++|+++++|++++.|.+......           
T Consensus       223 pl~~~~~~-------~~g~~~~~~~~~~~~~~~~~~~~~~~~i~~~~vt~~~~~P~~~~~l~~~~~~~~-----------  284 (552)
T PRK09274        223 PLFALFGP-------ALGMTSVIPDMDPTRPATVDPAKLFAAIERYGVTNLFGSPALLERLGRYGEANG-----------  284 (552)
T ss_pred             CHHHhhhh-------hhCCeEEecCcccccccccCHHHHHHHHHHcCCeEEeccHHHHHHHHHHhhhcC-----------
Confidence            99876543       4577776653        278999999999999999999999999876432110           


Q ss_pred             HHHHHHHHHHHhhCCCCCCcchhhhHHHHHHHHHHhCCcEeEEEEccCCCCHHHHHHHHHhc--CCceeeecCCCCCCCc
Q 006111          346 DALYKYKLAWMNMGYKQREASPLADLLAFRKVKARLGGRLRLVISGGAPLSTEVEEFLRVTC--CAFLVQGYGLTETCGP  423 (660)
Q Consensus       346 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lr~i~~~G~~l~~~~~~~~~~~~--~~~v~~~YG~tE~~~~  423 (660)
                                                        ...+++|.+++||+++++++.+.+.+.+  |+++++.||+||++++
T Consensus       285 ----------------------------------~~~~~lr~~~~gG~~~~~~~~~~~~~~~~~~~~~~~~YG~TE~~~~  330 (552)
T PRK09274        285 ----------------------------------IKLPSLRRVISAGAPVPIAVIERFRAMLPPDAEILTPYGATEALPI  330 (552)
T ss_pred             ----------------------------------CCCchhhEEEecCCcCCHHHHHHHHHHcCCCceEEcccccccccee
Confidence                                              0114899999999999999999999988  4699999999999876


Q ss_pred             eecccCC---------CccccCccCCCccCeeEEeeecCCC-------CCCCCCCCCCceEEEccCCcccccCCCchhhh
Q 006111          424 TTVCFPD---------EMCMVGTAGPVSVYSELRLEEVPEM-------GYSPLDDPPCGEVCVRGKTLFSGYYKNPDLTR  487 (660)
Q Consensus       424 ~~~~~~~---------~~~~~~~~G~~~~~~~v~ivd~~~~-------~~~~~~~~~~Gei~v~g~~~~~gy~~~~~~~~  487 (660)
                      ++.....         ......++|+|+++++++|+| +++       ...+++.|+.|||+|+|++++.||+++++.+.
T Consensus       331 ~~~~~~~~~~~~~~~~~~~~~~~vG~~~~~~~~~ivd-~~~~~~~~~~~~~~~~~g~~Gel~v~g~~~~~GY~~~~~~t~  409 (552)
T PRK09274        331 SSIESREILFATRAATDNGAGICVGRPVDGVEVRIIA-ISDAPIPEWDDALRLATGEIGEIVVAGPMVTRSYYNRPEATR  409 (552)
T ss_pred             EeecchhhhccccccccCCCCcccCccCCCceEEEEe-ccccccccccccccCCCCCeeEEEEecCcccccccCChHHhh
Confidence            6543321         111224789999999999998 432       22455677899999999999999999999988


Q ss_pred             hcc---cCC--ccccCceEEECCCCcEEEEeccCCeeEcCCCeeecchhHHHHHhcCcCcceEEEEecCCC--CeEEEEE
Q 006111          488 ESI---IDG--WFHTGDIGQILPNGVVKIIDRKKNLIKISQGEYVALEYLENVYCVAPIIEDIWVYGDSLK--SMLVAVV  560 (660)
Q Consensus       488 ~~~---~~g--~~~TGDl~~~~~~G~l~~~GR~~d~i~~~~G~~v~~~~iE~~l~~~p~V~~~~V~~~~~~--~~~~a~v  560 (660)
                      ..|   .+|  ||+|||+|++|++|+|+++||.+|+|++ +|++|+|.+||++|.+||+|.+|+|++.+++  +.++++|
T Consensus       410 ~~~~~~~~g~~w~~TGDlg~~d~dG~l~~~GR~~d~i~~-~G~~v~p~eIE~~l~~~p~V~~~~v~~~~~~~~~~~~~~v  488 (552)
T PRK09274        410 LAKIPDGQGDVWHRMGDLGYLDAQGRLWFCGRKAHRVET-AGGTLYTIPCERIFNTHPGVKRSALVGVGVPGAQRPVLCV  488 (552)
T ss_pred             hhhcccCCCCcEEEcCCEEEEccCCcEEEEeccCCeEEE-CCEEECcHHHHHHHHhCcccceeEEEEeCCCCCceEEEEE
Confidence            776   356  9999999999999999999999999997 8999999999999999999999999987654  3788888


Q ss_pred             EcChhhHHHHHHHCCCCCcHHHHhccHHHHHHHHHHHHHHHHhCCCCCceeeeEEEEecCCCCCCCCccc--cccccchH
Q 006111          561 VPCEEDTKKWAYSNGHAGSFLELCSLVQLQNYILSELKNAAERNKLRGFEHIKGVILDPRPFDMERDLVT--ATLKKKRN  638 (660)
Q Consensus       561 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~l~~~~~p~~i~~~~~~~~~~~~P~t--~~GKv~R~  638 (660)
                      ++.++..        .        ...+    +.+.+++++.  .++.+..|..+.++      +.||+|  ++||++|+
T Consensus       489 ~~~~~~~--------~--------~~~~----l~~~l~~~l~--~~~~~~~~~~~~~~------~~lP~t~~~~GKi~r~  540 (552)
T PRK09274        489 ELEPGVA--------C--------SKSA----LYQELRALAA--AHPHTAGIERFLIH------PSFPVDIRHNAKIFRE  540 (552)
T ss_pred             EccCccc--------c--------chHH----HhhhhHHHHH--hcCCCcceeEEecc------CCCCccccccccccHH
Confidence            8876531        0        1122    3344444443  33566778888876      446899  79999999


Q ss_pred             HHHHHHHHHH
Q 006111          639 KLLIYYQVEI  648 (660)
Q Consensus       639 ~l~~~~~~~i  648 (660)
                      +|++++++.+
T Consensus       541 ~L~~~~~~~~  550 (552)
T PRK09274        541 KLAVWAAKQL  550 (552)
T ss_pred             HHHHHHHHhh
Confidence            9999987754

>TIGR01217 ac_ac_CoA_syn acetoacetyl-CoA synthase

Probab=100.00  E-value=5.9e-64  Score=563.40  Aligned_cols=518  Identities=19%  Similarity=0.161  Sum_probs=392.8

Q ss_pred             CCCCCCCcHHHHHHHHHHhCCCCCceeeeccccCCCCCceEEeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEeCCchhHH
Q 006111           36 SVDSDLNTAWDIFSMSVQKYPGNRMLGWRPFVDGKFGPYVWKTYKEVYEEVLQIVSALRASGAEPGCRVGIYGANCPQWV  115 (660)
Q Consensus        36 ~~~~~~~ti~~~l~~~a~~~pd~~a~~~~~~~d~~~~~~~~~Ty~ql~~~v~~lA~~L~~~Gl~~gd~V~l~~~n~~e~~  115 (660)
                      +.+...-|+.+.+..   ++++++|+++.   + +.+..+++||+||.+++.++|+.|++.|+++||+|+++++|+++++
T Consensus        81 wf~~~~~n~~~~~~~---~~~~~~a~~~~---~-~~~~~~~~Ty~eL~~~v~~lA~~L~~~Gv~~GdrV~i~~~n~~e~~  153 (652)
T TIGR01217        81 WFPGARLNYAENLLR---AAGTEPALLYV---D-ETHEPAPVTWAELRRQVASLAAALRALGVRPGDRVSGYLPNIPQAV  153 (652)
T ss_pred             ECCCCeeeHHHHHhc---cCCCCeEEEEE---C-CCCCeeEEeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEcCCCHHHH
Confidence            555555666665553   35789999886   3 3445678999999999999999999999999999999999999999


Q ss_pred             HHHHHHHhCCCeEEecCCCCChhHHHHHHhcccceEEEEccchh---------hhhhccccccccCccEEEEecCCcHHH
Q 006111          116 EAMEACNALSLICVPLYDTLGPGAVNFILDHAEIDFVFVQDKKV---------KELLSPDCRSAQRLRVMVCFTSLTAEQ  186 (660)
Q Consensus       116 ~~~lA~~~~G~~~vpl~~~~~~~~l~~~l~~~~~~~ii~~~~~~---------~~~~~~~~~~~~~~~~i~~~~~~~~~~  186 (660)
                      +++|||+++|++++|+++.++.+++..+|+.++++++|+++...         ..+.+.. ...+.+..++.+.......
T Consensus       154 ~~~lA~~~~Gav~vp~~~~~~~~~l~~~l~~~~~k~li~~~~~~~~~k~~~~~~~~~~~~-~~~~~~~~~i~~~~~~~~~  232 (652)
T TIGR01217       154 VAMLATASVGAIWSSCSPDFGARGVLDRFQQIEPKLLFTVDGYRYNGKEHDRRDKVAEVR-KELPTLRAVVHIPYLGPRE  232 (652)
T ss_pred             HHHHHHHHhCeEEEecCCCCCHHHHHHHHHhcCCcEEEEccccccCCcccchHHHHHHHH-hcCCCccEEEEEeCCCCcc
Confidence            99999999999999999999999999999999999999987542         1111111 1223444555543211000


Q ss_pred             HHHHhhCCcceeeHHHHHhcCccCCccCCCCCCCceEEEEecCCCCCCCceeeecchhHHHH-hhhhhhhcccccCCCCC
Q 006111          187 KEMAVQTGIKPYSWDEFLHLGKVNEMEILPPQPFNICTIMYTSGTSGDPKGVVLTHETIATF-VSGVDLFLDQFEDKMTV  265 (660)
Q Consensus       187 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~TSGTTG~pK~v~~th~~l~~~-~~~~~~~~~~~~~~~~~  265 (660)
                      ..  ........+|+++...............++++++|+|||||||.||||+++|.+++.. .......+     ++.+
T Consensus       233 ~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~ilyTSGTTG~PKgV~~sh~~~~~~~~~~~~~~~-----~~~~  305 (652)
T TIGR01217       233 TE--APKIDGALDLEDFTAAAQAAELVFEQLPFDHPLWILFSSGTTGLPKCIVHSAGGTLVQHLKEHGLHC-----DLGP  305 (652)
T ss_pred             cc--cccccCcccHHHHHhcccCCCCCceecCCCCCEEEEEcCCCCCCCCeEEecccHHHHHHHHHHHhcc-----CCCC
Confidence            00  0000123456666544211122223456789999999999999999999999986543 33333334     7888


Q ss_pred             CcEEEEecChhHHHHHHHHHHHhhcCcEEEEecC-----ChhhHHHHhhhhcCeEEEechHHHHHHHHHHHHHHHhhchH
Q 006111          266 DDVYLSFLPLAHILDRVIEEYFFRRGASVGYYHG-----DLNALRDDLMELKPTLLAGVPRVFEKIHEGIKKALEELRPL  340 (660)
Q Consensus       266 ~~~~l~~~pl~~~~g~~~~l~~l~~G~~~v~~~~-----~~~~~~~~i~~~~~t~~~~~p~~~~~l~~~~~~~~~~~~~~  340 (660)
                      +|++++..|+.|..+ ..++.+++.|++++++++     ++..+++.++++++|++..+|.++..+.+...         
T Consensus       306 ~d~~~~~~~~~~~~~-~~~~~~l~~G~t~vl~~g~~~~~~~~~~~~~i~~~~vt~~~~~p~~~~~l~~~~~---------  375 (652)
T TIGR01217       306 GDRLFYYTTTGWMMW-NWLVSGLATGATLVLYDGSPGFPATNVLWDIAERTGATLFGTSAKYVMACRKAGV---------  375 (652)
T ss_pred             CcEEEEeCCcchhhh-HHHHHHHhcCcEEEEECCCCCCCCchHHHHHHHHhCCeEEecCHHHHHHHHhcCC---------
Confidence            999999999999754 334578999999999863     67899999999999999877777665532100         


Q ss_pred             HHHHHHHHHHHHHHHHhhCCCCCCcchhhhHHHHHHHHHHhCCcEeEEEEccCCCCHHHHHHHHHhcC--CceeeecCCC
Q 006111          341 RRRIFDALYKYKLAWMNMGYKQREASPLADLLAFRKVKARLGGRLRLVISGGAPLSTEVEEFLRVTCC--AFLVQGYGLT  418 (660)
Q Consensus       341 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lr~i~~~G~~l~~~~~~~~~~~~~--~~v~~~YG~t  418 (660)
                                               .+ ....++        ++||.+++||+++++++.+++.+.++  ..+.+.||+|
T Consensus       376 -------------------------~~-~~~~~l--------~sLr~i~~gGe~l~~~~~~~~~~~~~~~~~~~~~yG~T  421 (652)
T TIGR01217       376 -------------------------HP-ARTHDL--------SALQCVASTGSPLPPDGFRWVYDEIKADVWLASISGGT  421 (652)
T ss_pred             -------------------------Cc-cccCCh--------hheeEEEeecCCCCHHHHHHHHHHhCCCceEEeccCHH
Confidence                                     00 011122        49999999999999999999988875  4577899999


Q ss_pred             CCCCceecccCCCccccCccCCCccCeeEEeeecCCCCCCCCCCCCCceEEEccC--CcccccCCCchhhh--hc-c--c
Q 006111          419 ETCGPTTVCFPDEMCMVGTAGPVSVYSELRLEEVPEMGYSPLDDPPCGEVCVRGK--TLFSGYYKNPDLTR--ES-I--I  491 (660)
Q Consensus       419 E~~~~~~~~~~~~~~~~~~~G~~~~~~~v~ivd~~~~~~~~~~~~~~Gei~v~g~--~~~~gy~~~~~~~~--~~-~--~  491 (660)
                      |+++.............+++|.|.+|++++++| +++..+   .|+.|||+++||  +++.|||++++.+.  .. |  .
T Consensus       422 E~~~~~~~~~~~~~~~~g~~g~p~~g~~v~ivd-~~g~~~---~g~~GEl~v~gp~p~~~~gy~~~~~~t~~~~~~~~~~  497 (652)
T TIGR01217       422 DICSCFAGANPTLPVHIGEIQAPGLGTAVQSWD-PEGKPV---TGEVGELVCTNPMPSMPIRFWNDPDGSKYRDAYFDTY  497 (652)
T ss_pred             HHhccccCCCCCCCCcCCccCCCcCCCceEEEC-CCCCCC---CCCccEEEEecCCCccccceeCCCccchhHHhhhcCC
Confidence            975443332222233447899999999999999 777654   368999999996  68999999987654  22 2  2


Q ss_pred             CCccccCceEEECCCCcEEEEeccCCeeEcCCCeeecchhHHHHHhcCcCcceEEEEecCCC---CeEEEEEEcChhhHH
Q 006111          492 DGWFHTGDIGQILPNGVVKIIDRKKNLIKISQGEYVALEYLENVYCVAPIIEDIWVYGDSLK---SMLVAVVVPCEEDTK  568 (660)
Q Consensus       492 ~g~~~TGDl~~~~~~G~l~~~GR~~d~i~~~~G~~v~~~~iE~~l~~~p~V~~~~V~~~~~~---~~~~a~v~~~~~~~~  568 (660)
                      +|||+|||+|++|+||+|+++||.||+|++ +|++|+|.|||++|.+||+|.||+|++.+++   +.++|+|++.++.. 
T Consensus       498 ~g~~~tGDlg~~d~dG~l~i~GR~dd~I~~-~G~ri~p~EIE~~l~~~p~V~eaavvg~~~~~~ge~~~afVv~~~~~~-  575 (652)
T TIGR01217       498 PGVWRHGDWITLTPRGGIVIHGRSDSTLNP-QGVRMGSAEIYNAVERLDEVRESLCIGQEQPDGGYRVVLFVHLAPGAT-  575 (652)
T ss_pred             CCEEEcCCcEEECCCCcEEEEecccCeEec-CCEEcCHHHHHHHHHhCCCcceEEEEeeecCCCCEEEEEEEEECCCCC-
Confidence            789999999999999999999999999996 8999999999999999999999999998764   48999999887530 


Q ss_pred             HHHHHCCCCCcHHHHhccHHHHHHHHHHHHHHHHhCCCCCceeeeEEEEecCCCCCCCCccccccccchHHHHHHHH
Q 006111          569 KWAYSNGHAGSFLELCSLVQLQNYILSELKNAAERNKLRGFEHIKGVILDPRPFDMERDLVTATLKKKRNKLLIYYQ  645 (660)
Q Consensus       569 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~l~~~~~p~~i~~~~~~~~~~~~P~t~~GKv~R~~l~~~~~  645 (660)
                                      ..    ..+.++|+++++ .+|+.|++|+.|++++      .+|+|++||++|+.|++.+.
T Consensus       576 ----------------~~----~~~~~~l~~~~~-~~l~~~~~P~~i~~v~------~lP~T~sGKi~r~~Lr~~~~  625 (652)
T TIGR01217       576 ----------------LD----DALLDRIKRTIR-AGLSPRHVPDEIIEVP------GIPHTLTGKRVEVAVKRVLQ  625 (652)
T ss_pred             ----------------CC----HHHHHHHHHHHH-hhCCCCcCCCEEEECC------CCCCCCCccChHHHHHHHHc
Confidence                            11    223455666665 7899999999999874      46899999999999998874

This enzyme catalyzes the first step of the mevalonate pathway of IPP biosynthesis. Most bacteria do not use this pathway, but rather the deoxyxylulose pathway.

>PLN02574 4-coumarate--CoA ligase-like

Probab=100.00  E-value=1.2e-63  Score=553.71  Aligned_cols=503  Identities=23%  Similarity=0.264  Sum_probs=392.6

Q ss_pred             HHHHHHHHHHhCCCCCceeeeccccCCCCCceEEeHHHHHHHHHHHHHHHHH-cCCCCCCEEEEEeCCchhHHHHHHHHH
Q 006111           44 AWDIFSMSVQKYPGNRMLGWRPFVDGKFGPYVWKTYKEVYEEVLQIVSALRA-SGAEPGCRVGIYGANCPQWVEAMEACN  122 (660)
Q Consensus        44 i~~~l~~~a~~~pd~~a~~~~~~~d~~~~~~~~~Ty~ql~~~v~~lA~~L~~-~Gl~~gd~V~l~~~n~~e~~~~~lA~~  122 (660)
                      +..+|.+  +.+|+++|+++.   +..    .++||.||.++++++|++|.+ .|+++||+|+++++|++++++++|||+
T Consensus        43 ~~~l~~~--~~~~~~~a~~~~---~~~----~~~Ty~el~~~~~~lA~~L~~~~G~~~gd~V~i~~~n~~~~~~~~la~~  113 (560)
T PLN02574         43 VSFIFSH--HNHNGDTALIDS---STG----FSISYSELQPLVKSMAAGLYHVMGVRQGDVVLLLLPNSVYFPVIFLAVL  113 (560)
T ss_pred             HHHHhcC--cccCCCCEEEEC---CCC----CcccHHHHHHHHHHHHHHHHHHhCCCCCCEEEEECCCcchHHHHHHHHH
Confidence            3444544  678999999864   321    369999999999999999998 899999999999999999999999999


Q ss_pred             hCCCeEEecCCCCChhHHHHHHhcccceEEEEccchhhhhhccccccccCccEEEEecCCcHHHHHHHhhCCcceeeHHH
Q 006111          123 ALSLICVPLYDTLGPGAVNFILDHAEIDFVFVQDKKVKELLSPDCRSAQRLRVMVCFTSLTAEQKEMAVQTGIKPYSWDE  202 (660)
Q Consensus       123 ~~G~~~vpl~~~~~~~~l~~~l~~~~~~~ii~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~  202 (660)
                      ++|++++|++|.++.+++..+++.+++++++++.+....+...      ... ++.++.....     .........+.+
T Consensus       114 ~~G~v~v~l~p~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~------~~~-~~~~~~~~~~-----~~~~~~~~~~~~  181 (560)
T PLN02574        114 SLGGIVTTMNPSSSLGEIKKRVVDCSVGLAFTSPENVEKLSPL------GVP-VIGVPENYDF-----DSKRIEFPKFYE  181 (560)
T ss_pred             HhCeEEeCcCcccCHHHHHHHHHhcCCEEEEECHHHHHHHHhc------CCc-EEecCccccc-----ccCccCcccHHH
Confidence            9999999999999999999999999999999998765544321      111 2222111000     000011223444


Q ss_pred             HHhcCccCCccCCCCCCCceEEEEecCCCCCCCceeeecchhHHHHhhhhhhhcccccCCCCCCcEEEEecChhHHHHHH
Q 006111          203 FLHLGKVNEMEILPPQPFNICTIMYTSGTSGDPKGVVLTHETIATFVSGVDLFLDQFEDKMTVDDVYLSFLPLAHILDRV  282 (660)
Q Consensus       203 ~~~~~~~~~~~~~~~~~~~~~~i~~TSGTTG~pK~v~~th~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~pl~~~~g~~  282 (660)
                      +..... .........++++++++|||||||.||+|++||+++...+..+..............++++..+|++|.+|+.
T Consensus       182 ~~~~~~-~~~~~~~~~~~~~a~i~~TSGTTG~PKgV~~sh~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~pl~h~~g~~  260 (560)
T PLN02574        182 LIKEDF-DFVPKPVIKQDDVAAIMYSSGTTGASKGVVLTHRNLIAMVELFVRFEASQYEYPGSDNVYLAALPMFHIYGLS  260 (560)
T ss_pred             HhhcCC-cccccCCCCcCCEEEEEcCCCccCCCcEEEEeHHHHHHHHHHHHhccccccccCCCCcEEEEecchHHHHHHH
Confidence            443321 1222334467899999999999999999999999998877655332111111223568899999999999987


Q ss_pred             H-HHHHhhcCcEEEEecC-ChhhHHHHhhhhcCeEEEechHHHHHHHHHHHHHHHhhchHHHHHHHHHHHHHHHHHhhCC
Q 006111          283 I-EEYFFRRGASVGYYHG-DLNALRDDLMELKPTLLAGVPRVFEKIHEGIKKALEELRPLRRRIFDALYKYKLAWMNMGY  360 (660)
Q Consensus       283 ~-~l~~l~~G~~~v~~~~-~~~~~~~~i~~~~~t~~~~~p~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  360 (660)
                      . ++.++..|+++++.+. ++..+++.|+++++|+++++|+++..|.+.....                           
T Consensus       261 ~~~~~~l~~G~~~v~~~~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~---------------------------  313 (560)
T PLN02574        261 LFVVGLLSLGSTIVVMRRFDASDMVKVIDRFKVTHFPVVPPILMALTKKAKGV---------------------------  313 (560)
T ss_pred             HHHHHHHhcCCEEEEecCCCHHHHHHHHHHcCCeEEecCCHHHHHHHhCcccc---------------------------
Confidence            6 4556788999988876 9999999999999999999999999886532110                           


Q ss_pred             CCCCcchhhhHHHHHHHHHHhCCcEeEEEEccCCCCHHHHHHHHHhc-CCceeeecCCCCCCCceecccCC-CccccCcc
Q 006111          361 KQREASPLADLLAFRKVKARLGGRLRLVISGGAPLSTEVEEFLRVTC-CAFLVQGYGLTETCGPTTVCFPD-EMCMVGTA  438 (660)
Q Consensus       361 ~~~~~~~~~~~~~~~~~~~~~~~~lr~i~~~G~~l~~~~~~~~~~~~-~~~v~~~YG~tE~~~~~~~~~~~-~~~~~~~~  438 (660)
                               ...        ..+++|.+++||+++++++.+.+.+.+ ++.+++.||+||++.+.+..... .....+++
T Consensus       314 ---------~~~--------~~~~lr~~~~gg~~l~~~~~~~~~~~~~~~~v~~~YG~tE~~~~~~~~~~~~~~~~~~~v  376 (560)
T PLN02574        314 ---------CGE--------VLKSLKQVSCGAAPLSGKFIQDFVQTLPHVDFIQGYGMTESTAVGTRGFNTEKLSKYSSV  376 (560)
T ss_pred             ---------ccC--------ccccceEEEEecccCCHHHHHHHHHHCCCCcEEecccccccCceeecCCCccccCCCCce
Confidence                     000        114899999999999999999998887 68999999999998765533222 22345799


Q ss_pred             CCCccCeeEEeeecCCCCCCCCCCCCCceEEEccCCcccccCCCchhhhhcc-cCCccccCceEEECCCCcEEEEeccCC
Q 006111          439 GPVSVYSELRLEEVPEMGYSPLDDPPCGEVCVRGKTLFSGYYKNPDLTRESI-IDGWFHTGDIGQILPNGVVKIIDRKKN  517 (660)
Q Consensus       439 G~~~~~~~v~ivd~~~~~~~~~~~~~~Gei~v~g~~~~~gy~~~~~~~~~~~-~~g~~~TGDl~~~~~~G~l~~~GR~~d  517 (660)
                      |.++++++++|+| ++++ .+++.|+.|||||+|++++.||+++++.+.+.| .+|||+|||+|++|++|.+++.||.+|
T Consensus       377 G~~~~~~~v~i~d-~~~g-~~~~~g~~Gei~v~g~~~~~GY~~~~~~t~~~~~~~g~~~TGDlg~~~~~G~l~i~GR~~d  454 (560)
T PLN02574        377 GLLAPNMQAKVVD-WSTG-CLLPPGNCGELWIQGPGVMKGYLNNPKATQSTIDKDGWLRTGDIAYFDEDGYLYIVDRLKE  454 (560)
T ss_pred             eeeCCCcEEEEEe-CCCC-cCCCCCCCeEEEEECcchhhhhcCChhHhhhhccCCCCcccceEEEEECCCeEEEEecchh
Confidence            9999999999999 4443 355567899999999999999999999998888 699999999999999999999999999


Q ss_pred             eeEcCCCeeecchhHHHHHhcCcCcceEEEEecCCC---CeEEEEEEcChhhHHHHHHHCCCCCcHHHHhccHHHHHHHH
Q 006111          518 LIKISQGEYVALEYLENVYCVAPIIEDIWVYGDSLK---SMLVAVVVPCEEDTKKWAYSNGHAGSFLELCSLVQLQNYIL  594 (660)
Q Consensus       518 ~i~~~~G~~v~~~~iE~~l~~~p~V~~~~V~~~~~~---~~~~a~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  594 (660)
                      +|++ +|++|+|.+||++|.+||+|.|++|++.++.   +.++++|+..++.        ..        .        .
T Consensus       455 ~i~~-~G~~v~~~eiE~~l~~~~~V~~~~v~~~~~~~~g~~~~a~v~~~~~~--------~~--------~--------~  509 (560)
T PLN02574        455 IIKY-KGFQIAPADLEAVLISHPEIIDAAVTAVPDKECGEIPVAFVVRRQGS--------TL--------S--------Q  509 (560)
T ss_pred             heEE-CCEEECHHHHHHHHHhCCCcceEEEEccccCCCCcceEEEEEeCCCC--------CC--------C--------H
Confidence            9997 7999999999999999999999999997654   4788888877542        00        1        1


Q ss_pred             HHHHHHHHhCCCCCceeeeEEEEecCCCCCCCCccccccccchHHHHHHHHH
Q 006111          595 SELKNAAERNKLRGFEHIKGVILDPRPFDMERDLVTATLKKKRNKLLIYYQV  646 (660)
Q Consensus       595 ~~l~~~~~~~~l~~~~~p~~i~~~~~~~~~~~~P~t~~GKv~R~~l~~~~~~  646 (660)
                      ++|.++++ .+|+.|++|+.+.+++      .+|+|++||++|+.|++++.+
T Consensus       510 ~~l~~~~~-~~l~~~~~p~~v~~v~------~iP~t~~GKi~r~~L~~~~~~  554 (560)
T PLN02574        510 EAVINYVA-KQVAPYKKVRKVVFVQ------SIPKSPAGKILRRELKRSLTN  554 (560)
T ss_pred             HHHHHHHH-HhccCcccCcEEEEee------ccCCCCcchhhHHHHHHHHhh
Confidence            23444444 6799999999888874      468999999999999988754

>PRK05677 long-chain-fatty-acid--CoA ligase; Validated

Probab=100.00  E-value=4e-63  Score=550.21  Aligned_cols=515  Identities=21%  Similarity=0.268  Sum_probs=400.1

Q ss_pred             CCCCCcHHHHHHHHHHhCCCCCceeeeccccCCCCCceEEeHHHHHHHHHHHHHHHHH-cCCCCCCEEEEEeCCchhHHH
Q 006111           38 DSDLNTAWDIFSMSVQKYPGNRMLGWRPFVDGKFGPYVWKTYKEVYEEVLQIVSALRA-SGAEPGCRVGIYGANCPQWVE  116 (660)
Q Consensus        38 ~~~~~ti~~~l~~~a~~~pd~~a~~~~~~~d~~~~~~~~~Ty~ql~~~v~~lA~~L~~-~Gl~~gd~V~l~~~n~~e~~~  116 (660)
                      +..+.|+.+.|++.++++|+++|+++.    +     +.+||.||.++++++|++|.+ .|+++||+|+++++|++++++
T Consensus        20 ~~~~~~~~~~l~~~a~~~p~~~al~~~----~-----~~~Ty~el~~~~~~la~~L~~~~gi~~gd~Vai~~~n~~~~~~   90 (562)
T PRK05677         20 PDEYPNIQAVLKQSCQRFADKPAFSNL----G-----KTLTYGELYKLSGAFAAWLQQHTDLKPGDRIAVQLPNVLQYPV   90 (562)
T ss_pred             CCccCcHHHHHHHHHHhCCCCeeEEEC----C-----ceeeHHHHHHHHHHHHHHHHHhcCCCCCCEEEEECCCCHHHHH
Confidence            334468999999999999999999864    2     479999999999999999997 599999999999999999999


Q ss_pred             HHHHHHhCCCeEEecCCCCChhHHHHHHhcccceEEEEccchhhhhhccccccccCccEEEEecCCc--HHHHHHHh---
Q 006111          117 AMEACNALSLICVPLYDTLGPGAVNFILDHAEIDFVFVQDKKVKELLSPDCRSAQRLRVMVCFTSLT--AEQKEMAV---  191 (660)
Q Consensus       117 ~~lA~~~~G~~~vpl~~~~~~~~l~~~l~~~~~~~ii~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~--~~~~~~~~---  191 (660)
                      ++|||+++|++++|++|.++.+++..+++.++++++|++......+.+... . .....++..+...  +.......   
T Consensus        91 ~~la~~~~Ga~~v~l~~~~~~~~l~~~l~~~~~~~ii~~~~~~~~~~~~~~-~-~~~~~~~~~~~~~~~~~~~~~~~~~~  168 (562)
T PRK05677         91 AVFGAMRAGLIVVNTNPLYTAREMEHQFNDSGAKALVCLANMAHLAEKVLP-K-TGVKHVIVTEVADMLPPLKRLLINAV  168 (562)
T ss_pred             HHHHHHHcCeEEeecCCCCCHHHHHHHHhccCceEEEEecchhhhHHHhhh-c-cCcceeEEecccccccchhhhhcccc
Confidence            999999999999999999999999999999999999998765543322111 1 1122222221100  00000000   


Q ss_pred             ----------hCCcceeeHHHHHhcCccCCccCCCCCCCceEEEEecCCCCCCCceeeecchhHHHHhhhhhhhcccccC
Q 006111          192 ----------QTGIKPYSWDEFLHLGKVNEMEILPPQPFNICTIMYTSGTSGDPKGVVLTHETIATFVSGVDLFLDQFED  261 (660)
Q Consensus       192 ----------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~TSGTTG~pK~v~~th~~l~~~~~~~~~~~~~~~~  261 (660)
                                ........+.+.+..............++++++++|||||||.||+|+++|.++..........+.   .
T Consensus       169 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~a~i~~TSGTTG~PKgv~~s~~~l~~~~~~~~~~~~---~  245 (562)
T PRK05677        169 VKHVKKMVPAYHLPQAVKFNDALAKGAGQPVTEANPQADDVAVLQYTGGTTGVAKGAMLTHRNLVANMLQCRALMG---S  245 (562)
T ss_pred             hhhccccccccCCcccccHHHHHhcCCCCCCCCCCCCccCEEEEEeCCCCCCCCcEEEEehhHHHHHHHHHHHHhc---c
Confidence                      000112234444433322222233456799999999999999999999999999877655443331   1


Q ss_pred             CCC-CCcEEEEecChhHHHHHHH-HHHHhhcCcEEEEecC--ChhhHHHHhhhhcCeEEEechHHHHHHHHHHHHHHHhh
Q 006111          262 KMT-VDDVYLSFLPLAHILDRVI-EEYFFRRGASVGYYHG--DLNALRDDLMELKPTLLAGVPRVFEKIHEGIKKALEEL  337 (660)
Q Consensus       262 ~~~-~~~~~l~~~pl~~~~g~~~-~l~~l~~G~~~v~~~~--~~~~~~~~i~~~~~t~~~~~p~~~~~l~~~~~~~~~~~  337 (660)
                      .+. ..+++++.+|++|.+++.. ++..+..|++.++.+.  ++..+++.|+++++|+++++|+++..+.....      
T Consensus       246 ~~~~~~~~~~~~~pl~h~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~i~~~~~t~~~~~p~~~~~l~~~~~------  319 (562)
T PRK05677        246 NLNEGCEILIAPLPLYHIYAFTFHCMAMMLIGNHNILISNPRDLPAMVKELGKWKFSGFVGLNTLFVALCNNEA------  319 (562)
T ss_pred             CCCCCccEEEEcCcHHHHHHHHHHHHHHHHcCCeEEEecCcccHHHHHHHHHHcCceEEecHHHHHHHHHhCcc------
Confidence            233 3478899999999999875 5566778888776653  88899999999999999999999988754210      


Q ss_pred             chHHHHHHHHHHHHHHHHHhhCCCCCCcchhhhHHHHHHHHHHhCCcEeEEEEccCCCCHHHHHHHHHhcCCceeeecCC
Q 006111          338 RPLRRRIFDALYKYKLAWMNMGYKQREASPLADLLAFRKVKARLGGRLRLVISGGAPLSTEVEEFLRVTCCAFLVQGYGL  417 (660)
Q Consensus       338 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lr~i~~~G~~l~~~~~~~~~~~~~~~v~~~YG~  417 (660)
                                                     ....++        +++|.+++||+++++++.+.|.+.+|+++++.||+
T Consensus       320 -------------------------------~~~~~~--------~~lr~v~~gG~~~~~~~~~~~~~~~~~~v~~~YG~  360 (562)
T PRK05677        320 -------------------------------FRKLDF--------SALKLTLSGGMALQLATAERWKEVTGCAICEGYGM  360 (562)
T ss_pred             -------------------------------cccCCh--------hhceEEEEcCccCCHHHHHHHHHHcCCCeeccCCc
Confidence                                           000111        38999999999999999999999899999999999


Q ss_pred             CCCCCceecccCCCccccCccCCCccCeeEEeeecCCCCCCCCCCCCCceEEEccCCcccccCCCchhhhhcc-cCCccc
Q 006111          418 TETCGPTTVCFPDEMCMVGTAGPVSVYSELRLEEVPEMGYSPLDDPPCGEVCVRGKTLFSGYYKNPDLTRESI-IDGWFH  496 (660)
Q Consensus       418 tE~~~~~~~~~~~~~~~~~~~G~~~~~~~v~ivd~~~~~~~~~~~~~~Gei~v~g~~~~~gy~~~~~~~~~~~-~~g~~~  496 (660)
                      ||++.++....... ..++++|.|+++++++++| +++..  ++.|+.|||+++|+.++.||+++++.+.+.| .+|||+
T Consensus       361 tE~~~~~~~~~~~~-~~~~~vG~~~~~~~v~i~d-~~~~~--~~~g~~Gel~v~g~~~~~gY~~~~~~t~~~~~~~g~~~  436 (562)
T PRK05677        361 TETSPVVSVNPSQA-IQVGTIGIPVPSTLCKVID-DDGNE--LPLGEVGELCVKGPQVMKGYWQRPEATDEILDSDGWLK  436 (562)
T ss_pred             cccCcceeecCccC-CCCCccCccCCCCEEEEEC-CCCCC--CCCCCCeEEEEecCccchhhcCCchhhhhccCCCCccc
Confidence            99988776655432 2347899999999999999 66654  4556899999999999999999999999998 589999


Q ss_pred             cCceEEECCCCcEEEEeccCCeeEcCCCeeecchhHHHHHhcCcCcceEEEEecCCC---CeEEEEEEcChhhHHHHHHH
Q 006111          497 TGDIGQILPNGVVKIIDRKKNLIKISQGEYVALEYLENVYCVAPIIEDIWVYGDSLK---SMLVAVVVPCEEDTKKWAYS  573 (660)
Q Consensus       497 TGDl~~~~~~G~l~~~GR~~d~i~~~~G~~v~~~~iE~~l~~~p~V~~~~V~~~~~~---~~~~a~v~~~~~~~~~~~~~  573 (660)
                      |||+|++|++|.+++.||.+|+|++ +|++|+|.+||+.|.+||+|.+++|++.++.   +.+++++++.++.       
T Consensus       437 TGDlg~~~~~G~l~i~GR~~d~i~~-~G~~i~p~eiE~~l~~~~~v~~~~v~g~~~~~~g~~~~~~v~~~~~~-------  508 (562)
T PRK05677        437 TGDIALIQEDGYMRIVDRKKDMILV-SGFNVYPNELEDVLAALPGVLQCAAIGVPDEKSGEAIKVFVVVKPGE-------  508 (562)
T ss_pred             ccceEEECCCCcEEEEecCcCeEEe-CCEEECHHHHHHHHHhCCCccEEEEEeccCccCCceEEEEEEeCCCC-------
Confidence            9999999999999999999999997 7999999999999999999999999997754   4778888766532       


Q ss_pred             CCCCCcHHHHhccHHHHHHHHHHHHHHHHhCCCCCceeeeEEEEecCCCCCCCCccccccccchHHHHHHHHHH
Q 006111          574 NGHAGSFLELCSLVQLQNYILSELKNAAERNKLRGFEHIKGVILDPRPFDMERDLVTATLKKKRNKLLIYYQVE  647 (660)
Q Consensus       574 ~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~l~~~~~p~~i~~~~~~~~~~~~P~t~~GKv~R~~l~~~~~~~  647 (660)
                       +.        ..        +++.++++ ..|++|++|..|.+++      .+|+|++||++|++|++++.++
T Consensus       509 -~~--------~~--------~~l~~~~~-~~l~~~~~P~~i~~v~------~iP~t~sGKi~r~~L~~~~~~~  558 (562)
T PRK05677        509 -TL--------TK--------EQVMEHMR-ANLTGYKVPKAVEFRD------ELPTTNVGKILRRELRDEELKK  558 (562)
T ss_pred             -CC--------CH--------HHHHHHHH-HhhhhccCCcEEEEec------cCCCCCcccccHHHHHHHHHHh
Confidence             00        11        23334443 6788999999999874      4689999999999999877554

>PRK03640 O-succinylbenzoic acid--CoA ligase; Provisional

Probab=100.00  E-value=4.7e-63  Score=540.68  Aligned_cols=477  Identities=26%  Similarity=0.321  Sum_probs=398.3

Q ss_pred             CCcHHHHHHHHHHhCCCCCceeeeccccCCCCCceEEeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEeCCchhHHHHHHH
Q 006111           41 LNTAWDIFSMSVQKYPGNRMLGWRPFVDGKFGPYVWKTYKEVYEEVLQIVSALRASGAEPGCRVGIYGANCPQWVEAMEA  120 (660)
Q Consensus        41 ~~ti~~~l~~~a~~~pd~~a~~~~~~~d~~~~~~~~~Ty~ql~~~v~~lA~~L~~~Gl~~gd~V~l~~~n~~e~~~~~lA  120 (660)
                      |.++.+.|.+++.++||++|+.+.   +      +.+||.||.++++++|..|.+.|+++||+|+++++|++++++++||
T Consensus         1 ~~~~~~~l~~~a~~~p~~~a~~~~---~------~~~Ty~el~~~~~~~a~~L~~~g~~~~~~v~i~~~~~~~~~~~~la   71 (483)
T PRK03640          1 METMPNWLKQRAFLTPDRTAIEFE---E------KKVTFMELHEAVVSVAGKLAALGVKKGDRVALLMKNGMEMILVIHA   71 (483)
T ss_pred             CCcHHHHHHHHHHhCCCceEEEeC---C------eeeeHHHHHHHHHHHHHHHHHcCCCCCCEEEEECCCCHHHHHHHHH
Confidence            578999999999999999999865   3      5899999999999999999999999999999999999999999999


Q ss_pred             HHhCCCeEEecCCCCChhHHHHHHhcccceEEEEccchhhhhhccccccccCccEEEEecCCcHHHHHHHhhCCcceeeH
Q 006111          121 CNALSLICVPLYDTLGPGAVNFILDHAEIDFVFVQDKKVKELLSPDCRSAQRLRVMVCFTSLTAEQKEMAVQTGIKPYSW  200 (660)
Q Consensus       121 ~~~~G~~~vpl~~~~~~~~l~~~l~~~~~~~ii~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~  200 (660)
                      |+++|++++|+++..+.+++..+++.+++++++++...........                              ...+
T Consensus        72 ~~~~G~~~v~i~~~~~~~~~~~~~~~~~~~~vi~~~~~~~~~~~~~------------------------------~~~~  121 (483)
T PRK03640         72 LQQLGAVAVLLNTRLSREELLWQLDDAEVKCLITDDDFEAKLIPGI------------------------------SVKF  121 (483)
T ss_pred             HHhCCcEEEecCcCCCHHHHHHHHHhCCCCEEEEcchhhHHHhhhc------------------------------cccH
Confidence            9999999999999999999999999999999999876544321100                              0113


Q ss_pred             HHHHhcCccCCccCCCCCCCceEEEEecCCCCCCCceeeecchhHHHHhhhhhhhcccccCCCCCCcEEEEecChhHHHH
Q 006111          201 DEFLHLGKVNEMEILPPQPFNICTIMYTSGTSGDPKGVVLTHETIATFVSGVDLFLDQFEDKMTVDDVYLSFLPLAHILD  280 (660)
Q Consensus       201 ~~~~~~~~~~~~~~~~~~~~~~~~i~~TSGTTG~pK~v~~th~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~pl~~~~g  280 (660)
                      .++...............++++++++|||||||.||+|.+||.++...+......+     ++..++++++.+|++|.++
T Consensus       122 ~~~~~~~~~~~~~~~~~~~~~~a~i~~TSGtTG~PK~v~~s~~~~~~~~~~~~~~~-----~~~~~d~~l~~~p~~~~~g  196 (483)
T PRK03640        122 AELMNGPKEEAEIQEEFDLDEVATIMYTSGTTGKPKGVIQTYGNHWWSAVGSALNL-----GLTEDDCWLAAVPIFHISG  196 (483)
T ss_pred             HHHhhcccccCCCCCCCCCCCeEEEEeCCCcCCCCcEEEEecHHHHHHHHHHHHhc-----CCCcCcEEEEecCHHHHHH
Confidence            33332221222223345678999999999999999999999999988776665555     7889999999999999999


Q ss_pred             HHHHHHHhhcCcEEEEecC-ChhhHHHHhhhhcCeEEEechHHHHHHHHHHHHHHHhhchHHHHHHHHHHHHHHHHHhhC
Q 006111          281 RVIEEYFFRRGASVGYYHG-DLNALRDDLMELKPTLLAGVPRVFEKIHEGIKKALEELRPLRRRIFDALYKYKLAWMNMG  359 (660)
Q Consensus       281 ~~~~l~~l~~G~~~v~~~~-~~~~~~~~i~~~~~t~~~~~p~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  359 (660)
                      +...+.++..|+++++.+. ++..+++.++++++|++.++|+++..+.+.....                          
T Consensus       197 ~~~~~~~l~~G~~~~~~~~~~~~~~~~~i~~~~~t~l~~~P~~~~~l~~~~~~~--------------------------  250 (483)
T PRK03640        197 LSILMRSVIYGMRVVLVEKFDAEKINKLLQTGGVTIISVVSTMLQRLLERLGEG--------------------------  250 (483)
T ss_pred             HHHHHHHHhcCCEEEecCCCCHHHHHHHHHHhCCcEEEeHHHHHHHHHhCcCcc--------------------------
Confidence            8888888999999999886 9999999999999999999999999886432110                          


Q ss_pred             CCCCCcchhhhHHHHHHHHHHhCCcEeEEEEccCCCCHHHHHHHHHhcCCceeeecCCCCCCCceecccCC-CccccCcc
Q 006111          360 YKQREASPLADLLAFRKVKARLGGRLRLVISGGAPLSTEVEEFLRVTCCAFLVQGYGLTETCGPTTVCFPD-EMCMVGTA  438 (660)
Q Consensus       360 ~~~~~~~~~~~~~~~~~~~~~~~~~lr~i~~~G~~l~~~~~~~~~~~~~~~v~~~YG~tE~~~~~~~~~~~-~~~~~~~~  438 (660)
                                          ...+++|.+++||+++++.+.+.+++. ++++++.||+||++..++..... .....+++
T Consensus       251 --------------------~~~~~lr~~~~~g~~~~~~~~~~~~~~-~~~~~~~YG~tE~~~~~~~~~~~~~~~~~~~v  309 (483)
T PRK03640        251 --------------------TYPSSFRCMLLGGGPAPKPLLEQCKEK-GIPVYQSYGMTETASQIVTLSPEDALTKLGSA  309 (483)
T ss_pred             --------------------ccCCcceEEEEcCCCCCHHHHHHHHHh-CCCeeeeeccCcccccccccCcccccccCCCc
Confidence                                011389999999999999999988874 99999999999988654433332 34455899


Q ss_pred             CCCccCeeEEeeecCCCCCCCCCCCCCceEEEccCCcccccCCCchhhhhcccCCccccCceEEECCCCcEEEEeccCCe
Q 006111          439 GPVSVYSELRLEEVPEMGYSPLDDPPCGEVCVRGKTLFSGYYKNPDLTRESIIDGWFHTGDIGQILPNGVVKIIDRKKNL  518 (660)
Q Consensus       439 G~~~~~~~v~ivd~~~~~~~~~~~~~~Gei~v~g~~~~~gy~~~~~~~~~~~~~g~~~TGDl~~~~~~G~l~~~GR~~d~  518 (660)
                      |+|++++++++.+ +.   .+++.++.|||+++||+++.||+++++.+...|.+|||+|||++++++||.+++.||++|+
T Consensus       310 G~p~~~~~~~i~~-~~---~~~~~g~~Gel~v~g~~~~~gy~~~~~~~~~~~~~~~~~tGDl~~~~~~g~l~~~GR~~~~  385 (483)
T PRK03640        310 GKPLFPCELKIEK-DG---VVVPPFEEGEIVVKGPNVTKGYLNREDATRETFQDGWFKTGDIGYLDEEGFLYVLDRRSDL  385 (483)
T ss_pred             ccccCCcEEEEec-CC---CcCCCCCceEEEEECcchhhhhcCCHHHHHHHHhcCCeeccceEEEcCCCCEEEeecccCe
Confidence            9999999999998 43   3555678999999999999999999999999999999999999999999999999999999


Q ss_pred             eEcCCCeeecchhHHHHHhcCcCcceEEEEecCCC---CeEEEEEEcChhhHHHHHHHCCCCCcHHHHhccHHHHHHHHH
Q 006111          519 IKISQGEYVALEYLENVYCVAPIIEDIWVYGDSLK---SMLVAVVVPCEEDTKKWAYSNGHAGSFLELCSLVQLQNYILS  595 (660)
Q Consensus       519 i~~~~G~~v~~~~iE~~l~~~p~V~~~~V~~~~~~---~~~~a~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  595 (660)
                      +++ +|.+|++.+||+.+.++|+|.+++|++.+++   ..++++++.....                  ..        +
T Consensus       386 i~~-~G~~v~~~~ie~~i~~~~~v~~~~v~~~~~~~~~~~~~~~~~~~~~~------------------~~--------~  438 (483)
T PRK03640        386 IIS-GGENIYPAEIEEVLLSHPGVAEAGVVGVPDDKWGQVPVAFVVKSGEV------------------TE--------E  438 (483)
T ss_pred             EEe-CCEEECHHHHHHHHHhCCCeeEEEEEeCCCcccCCceEEEEEeCCCC------------------CH--------H
Confidence            996 8999999999999999999999999987654   3677777755421                  11        2


Q ss_pred             HHHHHHHhCCCCCceeeeEEEEecCCCCCCCCccccccccchHHHHHHHHH
Q 006111          596 ELKNAAERNKLRGFEHIKGVILDPRPFDMERDLVTATLKKKRNKLLIYYQV  646 (660)
Q Consensus       596 ~l~~~~~~~~l~~~~~p~~i~~~~~~~~~~~~P~t~~GKv~R~~l~~~~~~  646 (660)
                      +++++++ ..|++|++|..|++++      .+|+|++||++|++|++++++
T Consensus       439 ~l~~~~~-~~l~~~~~p~~i~~~~------~iP~t~~gK~~r~~l~~~~~~  482 (483)
T PRK03640        439 ELRHFCE-EKLAKYKVPKRFYFVE------ELPRNASGKLLRHELKQLVEE  482 (483)
T ss_pred             HHHHHHH-HhccCCCCCcEEEEeC------CCCCCCccceeHHHHHHHHhh
Confidence            3344443 6789999999999874      458999999999999998864

>PRK05605 long-chain-fatty-acid--CoA ligase; Validated

Probab=100.00  E-value=6.6e-63  Score=550.31  Aligned_cols=517  Identities=25%  Similarity=0.328  Sum_probs=410.0

Q ss_pred             CCcHHHHHHHHHHhCCCCCceeeeccccCCCCCceEEeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEeCCchhHHHHHHH
Q 006111           41 LNTAWDIFSMSVQKYPGNRMLGWRPFVDGKFGPYVWKTYKEVYEEVLQIVSALRASGAEPGCRVGIYGANCPQWVEAMEA  120 (660)
Q Consensus        41 ~~ti~~~l~~~a~~~pd~~a~~~~~~~d~~~~~~~~~Ty~ql~~~v~~lA~~L~~~Gl~~gd~V~l~~~n~~e~~~~~lA  120 (660)
                      ..++.++|+++++++|+++|+.+.   +      +.+||.||+++++++|.+|.+.|+++||+|+++++|+++++++++|
T Consensus        31 ~~~l~~~~~~~~~~~p~~~a~~~~---~------~~~Ty~ql~~~~~~~A~~L~~~gi~~gd~V~l~~~n~~~~~~~~lA  101 (573)
T PRK05605         31 DTTLVDLYDNAVARFGDRPALDFF---G------ATTTYAELGKQVRRAAAGLRALGVRPGDRVAIVLPNCPQHIVAFYA  101 (573)
T ss_pred             cCCHHHHHHHHHHHCCCCeEEEeC---C------CcccHHHHHHHHHHHHHHHHHhCCCCCCEEEEECCCCHHHHHHHHH
Confidence            348999999999999999999875   3      4799999999999999999999999999999999999999999999


Q ss_pred             HHhCCCeEEecCCCCChhHHHHHHhcccceEEEEccchhhhhhccccccccCccEEEEecCCcHH--HHH----------
Q 006111          121 CNALSLICVPLYDTLGPGAVNFILDHAEIDFVFVQDKKVKELLSPDCRSAQRLRVMVCFTSLTAE--QKE----------  188 (660)
Q Consensus       121 ~~~~G~~~vpl~~~~~~~~l~~~l~~~~~~~ii~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~--~~~----------  188 (660)
                      |+++|++++|++|.++.+++..+++.++++++|+++.....+.+....  .....++..+.....  ...          
T Consensus       102 ~~~~G~~~v~l~~~~~~~~l~~~l~~~~~~~ii~~~~~~~~~~~~~~~--~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~  179 (573)
T PRK05605        102 VLRLGAVVVEHNPLYTAHELEHPFEDHGARVAIVWDKVAPTVERLRRT--TPLETIVSVNMIAAMPLLQRLALRLPIPAL  179 (573)
T ss_pred             HHhcCcEEeecCcCCCHHHHHHHHhccCCcEEEechhhHHHHHhhhhc--cccceeEeeecccccccccccccccccccc
Confidence            999999999999999999999999999999999988765544222111  112223222210000  000          


Q ss_pred             -----HHhhCCcceeeHHHHHhcCccC---CccCCCCCCCceEEEEecCCCCCCCceeeecchhHHHHhhhhhhhccccc
Q 006111          189 -----MAVQTGIKPYSWDEFLHLGKVN---EMEILPPQPFNICTIMYTSGTSGDPKGVVLTHETIATFVSGVDLFLDQFE  260 (660)
Q Consensus       189 -----~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~i~~TSGTTG~pK~v~~th~~l~~~~~~~~~~~~~~~  260 (660)
                           ..........+|.++.......   ........++++++++|||||||.||+|.+||+++...+......+..  
T Consensus       180 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~i~~TSGTTG~PK~v~~s~~~l~~~~~~~~~~~~~--  257 (573)
T PRK05605        180 RKARAALTGPAPGTVPWETLVDAAIGGDGSDVSHPRPTPDDVALILYTSGTTGKPKGAQLTHRNLFANAAQGKAWVPG--  257 (573)
T ss_pred             cccccccccCCCcceeHHHHhhccccccccccCCCCCCCCCEEEEEcCCCCCCCCcEEEEecHHHHHHHHHHHhhccc--
Confidence                 0000011234566655432111   012233567899999999999999999999999998777654333210  


Q ss_pred             CCCCCCcEEEEecChhHHHHHHH-HHHHhhcCcEEEEecC-ChhhHHHHhhhhcCeEEEechHHHHHHHHHHHHHHHhhc
Q 006111          261 DKMTVDDVYLSFLPLAHILDRVI-EEYFFRRGASVGYYHG-DLNALRDDLMELKPTLLAGVPRVFEKIHEGIKKALEELR  338 (660)
Q Consensus       261 ~~~~~~~~~l~~~pl~~~~g~~~-~l~~l~~G~~~v~~~~-~~~~~~~~i~~~~~t~~~~~p~~~~~l~~~~~~~~~~~~  338 (660)
                       ....++++++.+|++|.+|+.. .+.+++.|+++++.+. ++..+++.++++++|++.++|.+++.|.+......    
T Consensus       258 -~~~~~~~~~~~~p~~~~~g~~~~~~~~l~~g~~~~~~~~~~~~~~~~~l~~~~~t~~~~~P~~~~~l~~~~~~~~----  332 (573)
T PRK05605        258 -LGDGPERVLAALPMFHAYGLTLCLTLAVSIGGELVLLPAPDIDLILDAMKKHPPTWLPGVPPLYEKIAEAAEERG----  332 (573)
T ss_pred             -cCCCCcEEEEecChHHHHHHHHHHHHHHHcCCEEEEeCCCCHHHHHHHHHHhCCEEEEchHHHHHHHHhCccccC----
Confidence             1234789999999999999876 5567899999988876 99999999999999999999999998875322110    


Q ss_pred             hHHHHHHHHHHHHHHHHHhhCCCCCCcchhhhHHHHHHHHHHhCCcEeEEEEccCCCCHHHHHHHHHhcCCceeeecCCC
Q 006111          339 PLRRRIFDALYKYKLAWMNMGYKQREASPLADLLAFRKVKARLGGRLRLVISGGAPLSTEVEEFLRVTCCAFLVQGYGLT  418 (660)
Q Consensus       339 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lr~i~~~G~~l~~~~~~~~~~~~~~~v~~~YG~t  418 (660)
                                                       .++        +++|.+++||+++++++.+.+.+.++.++++.||+|
T Consensus       333 ---------------------------------~~~--------~~lr~i~~gg~~l~~~~~~~~~~~~~~~i~~~YG~T  371 (573)
T PRK05605        333 ---------------------------------VDL--------SGVRNAFSGAMALPVSTVELWEKLTGGLLVEGYGLT  371 (573)
T ss_pred             ---------------------------------CCc--------hhccEEEECCCcCCHHHHHHHHHHhCCCeecccccc
Confidence                                             011        389999999999999999999988899999999999


Q ss_pred             CCCCceecccCCCccccCccCCCccCeeEEeeecCCCCCCCCCCCCCceEEEccCCcccccCCCchhhhhcccCCccccC
Q 006111          419 ETCGPTTVCFPDEMCMVGTAGPVSVYSELRLEEVPEMGYSPLDDPPCGEVCVRGKTLFSGYYKNPDLTRESIIDGWFHTG  498 (660)
Q Consensus       419 E~~~~~~~~~~~~~~~~~~~G~~~~~~~v~ivd~~~~~~~~~~~~~~Gei~v~g~~~~~gy~~~~~~~~~~~~~g~~~TG  498 (660)
                      |++++++.........++++|.|++++.++|+| +++...+++.++.|||+++|+.++.||++++..+.+.|.+|||+||
T Consensus       372 E~~~~~~~~~~~~~~~~~~~G~~~~~~~~~i~d-~~~~~~~~~~g~~Gel~v~~~~~~~gy~~~~~~~~~~~~~g~~~TG  450 (573)
T PRK05605        372 ETSPIIVGNPMSDDRRPGYVGVPFPDTEVRIVD-PEDPDETMPDGEEGELLVRGPQVFKGYWNRPEETAKSFLDGWFRTG  450 (573)
T ss_pred             hhchhhhcCCcccCCcCCccccCCCCCEEEEEc-CCCCCccCCCCCeeEEEEecCchhhhhcCChhHhhhcccCCCcccC
Confidence            999887766544444457999999999999999 6553345566789999999999999999999999999988999999


Q ss_pred             ceEEECCCCcEEEEeccCCeeEcCCCeeecchhHHHHHhcCcCcceEEEEecCCC---CeEEEEEEcChhhHHHHHHHCC
Q 006111          499 DIGQILPNGVVKIIDRKKNLIKISQGEYVALEYLENVYCVAPIIEDIWVYGDSLK---SMLVAVVVPCEEDTKKWAYSNG  575 (660)
Q Consensus       499 Dl~~~~~~G~l~~~GR~~d~i~~~~G~~v~~~~iE~~l~~~p~V~~~~V~~~~~~---~~~~a~v~~~~~~~~~~~~~~~  575 (660)
                      |+|+++++|.+++.||.+|+|+. +|++|+|.+||+++.+|+.|.+++|++.++.   +.++++|++.++..        
T Consensus       451 D~~~~~~~g~l~i~gR~dd~i~~-~G~~v~p~eIE~~l~~~~~i~~~~v~~~~~~~~~~~~~~~vv~~~~~~--------  521 (573)
T PRK05605        451 DVVVMEEDGFIRIVDRIKELIIT-GGFNVYPAEVEEVLREHPGVEDAAVVGLPREDGSEEVVAAVVLEPGAA--------  521 (573)
T ss_pred             CEEEEcCCCcEEEEeccccceee-CCEEECHHHHHHHHHhCcccceEEEEeeecccCCeEEEEEEEECCCCC--------
Confidence            99999999999999999999996 8999999999999999999999999986543   58888888876420        


Q ss_pred             CCCcHHHHhccHHHHHHHHHHHHHHHHhCCCCCceeeeEEEEecCCCCCCCCccccccccchHHHHHHHHHHHH
Q 006111          576 HAGSFLELCSLVQLQNYILSELKNAAERNKLRGFEHIKGVILDPRPFDMERDLVTATLKKKRNKLLIYYQVEID  649 (660)
Q Consensus       576 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~l~~~~~p~~i~~~~~~~~~~~~P~t~~GKv~R~~l~~~~~~~i~  649 (660)
                      .        .        .++|+++++ ..|+.+++|..|+++      +.+|+|.+||++|++|++++.+++.
T Consensus       522 ~--------~--------~~~l~~~~~-~~l~~~~~p~~i~~~------~~iP~t~~GKi~r~~L~~~~~~~~~  572 (573)
T PRK05605        522 L--------D--------PEGLRAYCR-EHLTRYKVPRRFYHV------DELPRDQLGKVRRREVREELLEKLG  572 (573)
T ss_pred             C--------C--------HHHHHHHHH-HhCccccCCcEEEEe------ccCCCCCcccccHHHHHHHHHHHhc
Confidence            0        1        133444444 678899999998886      3468999999999999999877653

>PLN03052 acetate--CoA ligase; Provisional

Probab=100.00  E-value=8.1e-63  Score=556.13  Aligned_cols=525  Identities=19%  Similarity=0.152  Sum_probs=394.3

Q ss_pred             CCCCCCCcHH-HHHHHHHHhCCCCCceeeeccccCC--CCCceEEeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEeCCch
Q 006111           36 SVDSDLNTAW-DIFSMSVQKYPGNRMLGWRPFVDGK--FGPYVWKTYKEVYEEVLQIVSALRASGAEPGCRVGIYGANCP  112 (660)
Q Consensus        36 ~~~~~~~ti~-~~l~~~a~~~pd~~a~~~~~~~d~~--~~~~~~~Ty~ql~~~v~~lA~~L~~~Gl~~gd~V~l~~~n~~  112 (660)
                      +.+...-|+. .+|+++++++|+++|+++.   +..  +++++++||+||.+++.++|+.|++.|+++||+|+++++|++
T Consensus       168 wf~g~~ln~~~~~l~~~~~~~pd~~Ai~~~---~e~~~~~~~~~~Ty~eL~~~v~~lA~~L~~~Gv~~GdrVai~~pn~~  244 (728)
T PLN03052        168 WLPGAVLNVAECCLTPKPSKTDDSIAIIWR---DEGSDDLPVNRMTLSELRSQVSRVANALDALGFEKGDAIAIDMPMNV  244 (728)
T ss_pred             ECCCCEeEHHHHHHHHHhccCCCCeEEEEE---CCCCCCCceEEeeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEeCCCH
Confidence            5666655554 4666666678999999987   421  235678999999999999999999999999999999999999


Q ss_pred             hHHHHHHHHHhCCCeEEecCCCCChhHHHHHHhcccceEEEEccchhhhh-----hccccccccCccEEEEecCCcHHHH
Q 006111          113 QWVEAMEACNALSLICVPLYDTLGPGAVNFILDHAEIDFVFVQDKKVKEL-----LSPDCRSAQRLRVMVCFTSLTAEQK  187 (660)
Q Consensus       113 e~~~~~lA~~~~G~~~vpl~~~~~~~~l~~~l~~~~~~~ii~~~~~~~~~-----~~~~~~~~~~~~~i~~~~~~~~~~~  187 (660)
                      ++++++|||+++|++++|++|.++.+++..+++.++++++|+++.....-     .+.......  ..++++....... 
T Consensus       245 e~via~LA~~~~Gav~vpi~p~~~~~~l~~rl~~~~~k~lit~d~~~~~gk~~~~~~~~~~~~~--~~~iv~~~~~~~~-  321 (728)
T PLN03052        245 HAVIIYLAIILAGCVVVSIADSFAPSEIATRLKISKAKAIFTQDVIVRGGKSIPLYSRVVEAKA--PKAIVLPADGKSV-  321 (728)
T ss_pred             HHHHHHHHHHHcCCEEEeeCCCCCHHHHHHHHHhcCceEEEEcCccccCCcccchHHHHHHhcC--CcEEEEeCCCCcc-
Confidence            99999999999999999999999999999999999999999987543110     000000001  1122222111000 


Q ss_pred             HHHhhCCcceeeHHHHHhcCccC----CccCCCCCCCceEEEEecCCCCCCCceeeecchhHHHHhhhhhhhcccccCCC
Q 006111          188 EMAVQTGIKPYSWDEFLHLGKVN----EMEILPPQPFNICTIMYTSGTSGDPKGVVLTHETIATFVSGVDLFLDQFEDKM  263 (660)
Q Consensus       188 ~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~i~~TSGTTG~pK~v~~th~~l~~~~~~~~~~~~~~~~~~  263 (660)
                      .  ........+|.+++......    ........++++++|+|||||||.||+|+++|.+++.........+     ++
T Consensus       322 ~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~a~IlyTSGTTG~PKgVv~sh~~~l~~~~~~~~~~-----~l  394 (728)
T PLN03052        322 R--VKLREGDMSWDDFLARANGLRRPDEYKAVEQPVEAFTNILFSSGTTGEPKAIPWTQLTPLRAAADAWAHL-----DI  394 (728)
T ss_pred             c--cccccCCccHHHHHhccccccccccccccccCCCCcEEEEecCCCCCCCceEEECchHHHHHHHHHHHhc-----CC
Confidence            0  00001134577766442111    1111223568999999999999999999999998877665544444     77


Q ss_pred             CCCcEEEEecChhHHHHHHHHHHHhhcCcEEEEecC--ChhhHHHHhhhhcCeEEEechHHHHHHHHHHHHHHHhhchHH
Q 006111          264 TVDDVYLSFLPLAHILDRVIEEYFFRRGASVGYYHG--DLNALRDDLMELKPTLLAGVPRVFEKIHEGIKKALEELRPLR  341 (660)
Q Consensus       264 ~~~~~~l~~~pl~~~~g~~~~l~~l~~G~~~v~~~~--~~~~~~~~i~~~~~t~~~~~p~~~~~l~~~~~~~~~~~~~~~  341 (660)
                      ..+|++++..|+.|.++....+.+|..|++++++++  ++..+++.++++++|++.++|++++.+.+..           
T Consensus       395 ~~~d~~~~~~~l~w~~g~~~v~~~L~~Gat~vl~~g~p~~~~~~~~i~~~~vT~l~~~Pt~l~~l~~~~-----------  463 (728)
T PLN03052        395 RKGDIVCWPTNLGWMMGPWLVYASLLNGATLALYNGSPLGRGFAKFVQDAKVTMLGTVPSIVKTWKNTN-----------  463 (728)
T ss_pred             CCCcEEEECCCcHHHhHHHHHHHHHHhCCEEEEeCCCCCCChHHHHHHHHCCCEEEECHHHHHHHHhcC-----------
Confidence            889999999999999998777788999999999975  5678999999999999999999998875421           


Q ss_pred             HHHHHHHHHHHHHHHhhCCCCCCcchhhhHHHHHHHHHHhCCcEeEEEEccCCCCHHHHHHHHHhcC-CceeeecCCCCC
Q 006111          342 RRIFDALYKYKLAWMNMGYKQREASPLADLLAFRKVKARLGGRLRLVISGGAPLSTEVEEFLRVTCC-AFLVQGYGLTET  420 (660)
Q Consensus       342 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lr~i~~~G~~l~~~~~~~~~~~~~-~~v~~~YG~tE~  420 (660)
                                                ..+..++        ++||.++++|++++++...++.+.++ .++++.||+||+
T Consensus       464 --------------------------~~~~~dl--------ssLr~i~s~Ge~l~~~~~~~~~~~~~~~~i~~~yG~TE~  509 (728)
T PLN03052        464 --------------------------CMAGLDW--------SSIRCFGSTGEASSVDDYLWLMSRAGYKPIIEYCGGTEL  509 (728)
T ss_pred             --------------------------CcccCCh--------hheeEEEecCCCCCHHHHHHHHHhcCCCCeEeeccChhh
Confidence                                      0011223        38999999999999999888887765 579999999999


Q ss_pred             CCceecccCCCccccCccCCCccCeeEEeeecCCCCCCCCCCCCCceEEEccCC--cccccCCCchhhhhccc-----CC
Q 006111          421 CGPTTVCFPDEMCMVGTAGPVSVYSELRLEEVPEMGYSPLDDPPCGEVCVRGKT--LFSGYYKNPDLTRESII-----DG  493 (660)
Q Consensus       421 ~~~~~~~~~~~~~~~~~~G~~~~~~~v~ivd~~~~~~~~~~~~~~Gei~v~g~~--~~~gy~~~~~~~~~~~~-----~g  493 (660)
                      ++.+..........++++|.|++|++++|+| ++++.++.+..+.|||+++++.  ...+|+++.. ...-|.     .|
T Consensus       510 ~~~~~~~~~~~~~~~g~~g~p~~g~~v~v~d-~~g~~v~~g~~~~GEL~v~~~~~~~~~~~~~~~~-~~~yf~~~p~~~g  587 (728)
T PLN03052        510 GGGFVTGSLLQPQAFAAFSTPAMGCKLFILD-DSGNPYPDDAPCTGELALFPLMFGASSTLLNADH-YKVYFKGMPVFNG  587 (728)
T ss_pred             CcccccCCCCCCCCCCccccCCCCceEEEEC-CCCCCCCCCCCceEEEEEeCCCCCCCccccCchh-hhhhhhcCCCCCC
Confidence            8755433322233457899999999999999 7777655433246999998653  3356676542 222231     23


Q ss_pred             --ccccCceEEECCCCcEEEEeccCCeeEcCCCeeecchhHHHHHh-cCcCcceEEEEecCCC----CeEEEEEEcC--h
Q 006111          494 --WFHTGDIGQILPNGVVKIIDRKKNLIKISQGEYVALEYLENVYC-VAPIIEDIWVYGDSLK----SMLVAVVVPC--E  564 (660)
Q Consensus       494 --~~~TGDl~~~~~~G~l~~~GR~~d~i~~~~G~~v~~~~iE~~l~-~~p~V~~~~V~~~~~~----~~~~a~v~~~--~  564 (660)
                        ||+|||++++|++|.++++||.||+|++ +|.+|+|.|||++|. .||.|.||+|++.+++    +.++++|+++  +
T Consensus       588 ~~~~~tGDl~~~d~dG~l~i~GR~Dd~I~~-~G~rI~~~EIE~~l~~~~p~V~eaaVvg~~d~~~g~e~~~afVvl~~~~  666 (728)
T PLN03052        588 KILRRHGDIFERTSGGYYRAHGRADDTMNL-GGIKVSSVEIERVCNAADESVLETAAIGVPPPGGGPEQLVIAAVLKDPP  666 (728)
T ss_pred             CEEEecCceEEECCCCeEEEEecCCCEEee-CCEEeCHHHHHHHHHhcCCCcceEEEEeeecCCCCcEEEEEEEEEecCC
Confidence              9999999999999999999999999997 899999999999994 8999999999997654    4799999987  3


Q ss_pred             hhHHHHHHHCCCCCcHHHHhccHHHHHHHHHHHHHHHHhCCCCCceeeeEEEEecCCCCCCCCccccccccchHHHHHHH
Q 006111          565 EDTKKWAYSNGHAGSFLELCSLVQLQNYILSELKNAAERNKLRGFEHIKGVILDPRPFDMERDLVTATLKKKRNKLLIYY  644 (660)
Q Consensus       565 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~l~~~~~p~~i~~~~~~~~~~~~P~t~~GKv~R~~l~~~~  644 (660)
                      +.        ..        +..++.+    .+++.++ ..|+++.+|+.|++++      .+|+|.+||++|+.|++.+
T Consensus       667 g~--------~~--------~~~~L~~----~i~~~i~-~~l~~~~~p~~i~~v~------~lP~T~sGKi~Rr~Lr~~~  719 (728)
T PLN03052        667 GS--------NP--------DLNELKK----IFNSAIQ-KKLNPLFKVSAVVIVP------SFPRTASNKVMRRVLRQQL  719 (728)
T ss_pred             CC--------CC--------CHHHHHH----HHHHHHH-hhcCCccCCCEEEEcC------CCCCCCchHHHHHHHHHHH
Confidence            21        00        1133444    4444443 6788889999888874      4689999999999999988


Q ss_pred             HHHH
Q 006111          645 QVEI  648 (660)
Q Consensus       645 ~~~i  648 (660)
                      .+..
T Consensus       720 ~~~~  723 (728)
T PLN03052        720 AQEL  723 (728)
T ss_pred             Hhhh
Confidence            7765

>PLN02246 4-coumarate--CoA ligase

Probab=100.00  E-value=1.2e-62  Score=543.99  Aligned_cols=505  Identities=26%  Similarity=0.325  Sum_probs=404.8

Q ss_pred             CCCCcHHHHHHHHHHhCCCCCceeeeccccCCCCCceEEeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEeCCchhHHHHH
Q 006111           39 SDLNTAWDIFSMSVQKYPGNRMLGWRPFVDGKFGPYVWKTYKEVYEEVLQIVSALRASGAEPGCRVGIYGANCPQWVEAM  118 (660)
Q Consensus        39 ~~~~ti~~~l~~~a~~~pd~~a~~~~~~~d~~~~~~~~~Ty~ql~~~v~~lA~~L~~~Gl~~gd~V~l~~~n~~e~~~~~  118 (660)
                      .+..++.+++..+++++|+++|+++.   +..    +++||.||.++++++|.+|.+.|+++||+|+++++|++++++++
T Consensus        20 ~~~~~~~~~l~~~~~~~~~~~a~~~~---~~~----~~~ty~el~~~~~~la~~L~~~g~~~gd~V~i~~~~~~~~~~~~   92 (537)
T PLN02246         20 PNHLPLHDYCFERLSEFSDRPCLIDG---ATG----RVYTYADVELLSRRVAAGLHKLGIRQGDVVMLLLPNCPEFVLAF   92 (537)
T ss_pred             CCCCcHHHHHHHHHHhCCCCeEEEec---CCC----ceeeHHHHHHHHHHHHHHHHHhCCCCCCEEEEECCCChHHHHHH
Confidence            44568999999999999999999864   211    57999999999999999999999999999999999999999999


Q ss_pred             HHHHhCCCeEEecCCCCChhHHHHHHhcccceEEEEccchhhhhhccccccccCccEEEEecCCcHHHHHHHhhCCccee
Q 006111          119 EACNALSLICVPLYDTLGPGAVNFILDHAEIDFVFVQDKKVKELLSPDCRSAQRLRVMVCFTSLTAEQKEMAVQTGIKPY  198 (660)
Q Consensus       119 lA~~~~G~~~vpl~~~~~~~~l~~~l~~~~~~~ii~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~  198 (660)
                      |||+++|++++|+++.++.+++..+++.++++++|++......+..... . ... .++.++...           ....
T Consensus        93 la~~~~G~~~v~l~~~~~~~~l~~~l~~~~~~~li~~~~~~~~~~~~~~-~-~~~-~~i~~~~~~-----------~~~~  158 (537)
T PLN02246         93 LGASRRGAVTTTANPFYTPAEIAKQAKASGAKLIITQSCYVDKLKGLAE-D-DGV-TVVTIDDPP-----------EGCL  158 (537)
T ss_pred             HHHHHcCEEEecCCCCCCHHHHHHHHHhcCCcEEEEccchHHHHHHHhh-c-CCc-eEEEeCCCC-----------CCce
Confidence            9999999999999999999999999999999999998876655433221 0 111 344443321           1123


Q ss_pred             eHHHHHhcCccCCccCCCCCCCceEEEEecCCCCCCCceeeecchhHHHHhhhhhhhcccccCCCCCCcEEEEecChhHH
Q 006111          199 SWDEFLHLGKVNEMEILPPQPFNICTIMYTSGTSGDPKGVVLTHETIATFVSGVDLFLDQFEDKMTVDDVYLSFLPLAHI  278 (660)
Q Consensus       199 ~~~~~~~~~~~~~~~~~~~~~~~~~~i~~TSGTTG~pK~v~~th~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~pl~~~  278 (660)
                      .+.++.... ....+.....++++++++|||||||.||+|+++|+++...+........ ....+..+|++++.+|++|.
T Consensus       159 ~~~~~~~~~-~~~~~~~~~~~~~~~~i~~TSGtTG~PKgv~~s~~~l~~~~~~~~~~~~-~~~~~~~~d~~l~~~pl~~~  236 (537)
T PLN02246        159 HFSELTQAD-ENELPEVEISPDDVVALPYSSGTTGLPKGVMLTHKGLVTSVAQQVDGEN-PNLYFHSDDVILCVLPMFHI  236 (537)
T ss_pred             eHHHHhcCC-CCCCCCCCCCccCEEEEEeCCCCCCCCceEEEeHHHHHHHHHHHhhccc-cccCCCCCcEEEEeechHHH
Confidence            444444322 1122233456789999999999999999999999999887665432110 01267889999999999999


Q ss_pred             HHHHH-HHHHhhcCcEEEEecC-ChhhHHHHhhhhcCeEEEechHHHHHHHHHHHHHHHhhchHHHHHHHHHHHHHHHHH
Q 006111          279 LDRVI-EEYFFRRGASVGYYHG-DLNALRDDLMELKPTLLAGVPRVFEKIHEGIKKALEELRPLRRRIFDALYKYKLAWM  356 (660)
Q Consensus       279 ~g~~~-~l~~l~~G~~~v~~~~-~~~~~~~~i~~~~~t~~~~~p~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  356 (660)
                      +++.. ++.++..|+++++.+. ++..+++.|+++++|+++++|.++..|.+....                        
T Consensus       237 ~~~~~~~~~~l~~G~~~~~~~~~~~~~~~~~i~~~~~t~~~~~p~~~~~l~~~~~~------------------------  292 (537)
T PLN02246        237 YSLNSVLLCGLRVGAAILIMPKFEIGALLELIQRHKVTIAPFVPPIVLAIAKSPVV------------------------  292 (537)
T ss_pred             HHHHHHHHHHHhcCCEEEEeCCCCHHHHHHHHHHhCceEEEcchHHHHHHhcCccc------------------------
Confidence            99865 5667999999999886 899999999999999999999999887542110                        


Q ss_pred             hhCCCCCCcchhhhHHHHHHHHHHhCCcEeEEEEccCCCCHHHHHHHHHhc-CCceeeecCCCCCCCceecccC----CC
Q 006111          357 NMGYKQREASPLADLLAFRKVKARLGGRLRLVISGGAPLSTEVEEFLRVTC-CAFLVQGYGLTETCGPTTVCFP----DE  431 (660)
Q Consensus       357 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~lr~i~~~G~~l~~~~~~~~~~~~-~~~v~~~YG~tE~~~~~~~~~~----~~  431 (660)
                                   ...++        +++|.+++||+++++++.+.+.+.+ +..+++.||+||++.+++.+..    ..
T Consensus       293 -------------~~~~~--------~~lr~~~~gg~~l~~~~~~~~~~~~~~~~~~~~YG~tE~~~~~~~~~~~~~~~~  351 (537)
T PLN02246        293 -------------EKYDL--------SSIRMVLSGAAPLGKELEDAFRAKLPNAVLGQGYGMTEAGPVLAMCLAFAKEPF  351 (537)
T ss_pred             -------------cccCc--------cceeEEEEecCcCCHHHHHHHHHHcCCCeEeccccccccCcccccccccCCCCc
Confidence                         00011        3899999999999999999999988 6789999999999876554321    11


Q ss_pred             ccccCccCCCccCeeEEeeecCCCCCCCCCCCCCceEEEccCCcccccCCCchhhhhcc-cCCccccCceEEECCCCcEE
Q 006111          432 MCMVGTAGPVSVYSELRLEEVPEMGYSPLDDPPCGEVCVRGKTLFSGYYKNPDLTRESI-IDGWFHTGDIGQILPNGVVK  510 (660)
Q Consensus       432 ~~~~~~~G~~~~~~~v~ivd~~~~~~~~~~~~~~Gei~v~g~~~~~gy~~~~~~~~~~~-~~g~~~TGDl~~~~~~G~l~  510 (660)
                      ....+++|+|+++++++++| ++++ .+++.|+.|||+++|+.++.||+++++.+...| .+|||+|||+|+++++|.++
T Consensus       352 ~~~~~~~G~~~~~~~~~i~d-~~~~-~~~~~g~~Gel~v~g~~~~~GY~~~~~~~~~~~~~~~~~~TGD~~~~~~~g~l~  429 (537)
T PLN02246        352 PVKSGSCGTVVRNAELKIVD-PETG-ASLPRNQPGEICIRGPQIMKGYLNDPEATANTIDKDGWLHTGDIGYIDDDDELF  429 (537)
T ss_pred             cccCCccccccCCcEEEEec-CCCC-CcCCCCCceEEEEECCchhccccCCchhhhhcccCCCCeeecceEEEeCCCeEE
Confidence            22347899999999999998 5433 345567899999999999999999999998888 68999999999999999999


Q ss_pred             EEeccCCeeEcCCCeeecchhHHHHHhcCcCcceEEEEecCCC---CeEEEEEEcChhhHHHHHHHCCCCCcHHHHhccH
Q 006111          511 IIDRKKNLIKISQGEYVALEYLENVYCVAPIIEDIWVYGDSLK---SMLVAVVVPCEEDTKKWAYSNGHAGSFLELCSLV  587 (660)
Q Consensus       511 ~~GR~~d~i~~~~G~~v~~~~iE~~l~~~p~V~~~~V~~~~~~---~~~~a~v~~~~~~~~~~~~~~~~~~~~~~~~~~~  587 (660)
                      +.||.+|+|+. +|++|+|.+||+.|.+||+|.+|+|++.++.   +.++++++..++..        .        .  
T Consensus       430 ~~GR~dd~i~~-~G~~i~~~eIE~~l~~~~~v~~~~v~~~~~~~~~~~~~~~v~~~~~~~--------~--------~--  490 (537)
T PLN02246        430 IVDRLKELIKY-KGFQVAPAELEALLISHPSIADAAVVPMKDEVAGEVPVAFVVRSNGSE--------I--------T--  490 (537)
T ss_pred             EEecccceEEE-CCEEECcHHHHHHHHhCCCeeEEEEEcccCccCCceeEEEEEeCCCCC--------C--------C--
Confidence            99999999997 7999999999999999999999999997654   47888888776420        0        1  


Q ss_pred             HHHHHHHHHHHHHHHhCCCCCceeeeEEEEecCCCCCCCCccccccccchHHHHHHHH
Q 006111          588 QLQNYILSELKNAAERNKLRGFEHIKGVILDPRPFDMERDLVTATLKKKRNKLLIYYQ  645 (660)
Q Consensus       588 ~~~~~~~~~l~~~~~~~~l~~~~~p~~i~~~~~~~~~~~~P~t~~GKv~R~~l~~~~~  645 (660)
                            .++|+++++ ..|+.|+.|..|.++      +.+|+|++||++|++|++++.
T Consensus       491 ------~~~l~~~l~-~~l~~~~~p~~i~~~------~~~P~t~~GKi~r~~L~~~~~  535 (537)
T PLN02246        491 ------EDEIKQFVA-KQVVFYKRIHKVFFV------DSIPKAPSGKILRKDLRAKLA  535 (537)
T ss_pred             ------HHHHHHHHH-hhCcCccccceEEEe------ccCCCCCcchhhHHHHHHHHh
Confidence                  123444444 679999999999887      446899999999999998874

>PRK08314 long-chain-fatty-acid--CoA ligase; Validated

Probab=100.00  E-value=1.1e-62  Score=545.97  Aligned_cols=512  Identities=24%  Similarity=0.292  Sum_probs=409.4

Q ss_pred             CCCCcHHHHHHHHHHhCCCCCceeeeccccCCCCCceEEeHHHHHHHHHHHHHHHHHc-CCCCCCEEEEEeCCchhHHHH
Q 006111           39 SDLNTAWDIFSMSVQKYPGNRMLGWRPFVDGKFGPYVWKTYKEVYEEVLQIVSALRAS-GAEPGCRVGIYGANCPQWVEA  117 (660)
Q Consensus        39 ~~~~ti~~~l~~~a~~~pd~~a~~~~~~~d~~~~~~~~~Ty~ql~~~v~~lA~~L~~~-Gl~~gd~V~l~~~n~~e~~~~  117 (660)
                      .+..++.++|.+.++++|+++|+++.   +      +++||+||.+++.++|..|.+. |+++||+|+++++|+++++++
T Consensus         7 ~~~~tl~~~l~~~a~~~~~~~a~~~~---~------~~~Ty~~l~~~v~~~a~~L~~~~g~~~g~~V~i~~~~~~~~~~~   77 (546)
T PRK08314          7 LPETSLFHNLEVSARRYPDKTAIVFY---G------RAISYRELLEEAERLAGYLQQECGVRKGDRVLLYMQNSPQFVIA   77 (546)
T ss_pred             CCCCCHHHHHHHHHHHcCCCcceeec---C------ceecHHHHHHHHHHHHHHHHHhhCCCCCCEEEEECCCChHHHHH
Confidence            44568999999999999999999876   4      4799999999999999999999 999999999999999999999


Q ss_pred             HHHHHhCCCeEEecCCCCChhHHHHHHhcccceEEEEccchhhhhhccccccccCccEEEEecCCcH--HH-----HHHH
Q 006111          118 MEACNALSLICVPLYDTLGPGAVNFILDHAEIDFVFVQDKKVKELLSPDCRSAQRLRVMVCFTSLTA--EQ-----KEMA  190 (660)
Q Consensus       118 ~lA~~~~G~~~vpl~~~~~~~~l~~~l~~~~~~~ii~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~--~~-----~~~~  190 (660)
                      +|||+++|++++|+++..+.+++..+++.++++++|++......+.......  .+..++.......  ..     ..+.
T Consensus        78 ~lA~~~~G~~~v~l~~~~~~~~l~~~l~~~~~~~ii~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~  155 (546)
T PRK08314         78 YYAILRANAVVVPVNPMNREEELAHYVTDSGARVAIVGSELAPKVAPAVGNL--RLRHVIVAQYSDYLPAEPEIAVPAWL  155 (546)
T ss_pred             HHHHHHcCcEEeecCcCcCHHHHHHHHHhCCCeEEEEccchhhhHHHHhhcc--CcceEEEecchhhcccccccCccccc
Confidence            9999999999999999999999999999999999999987766553322111  1222322210000  00     0000


Q ss_pred             -------hhCCcceeeHHHHHhcCccCCccCCCCCCCceEEEEecCCCCCCCceeeecchhHHHHhhhhhhhcccccCCC
Q 006111          191 -------VQTGIKPYSWDEFLHLGKVNEMEILPPQPFNICTIMYTSGTSGDPKGVVLTHETIATFVSGVDLFLDQFEDKM  263 (660)
Q Consensus       191 -------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~TSGTTG~pK~v~~th~~l~~~~~~~~~~~~~~~~~~  263 (660)
                             ...+.....|.++.....  ........++++++++|||||||.||+|.++|++++..+......+     ++
T Consensus       156 ~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~a~i~~TSGtTG~PK~v~~s~~~l~~~~~~~~~~~-----~~  228 (546)
T PRK08314        156 RAEPPLQALAPGGVVAWKEALAAGL--APPPHTAGPDDLAVLPYTSGTTGVPKGCMHTHRTVMANAVGSVLWS-----NS  228 (546)
T ss_pred             ccccccccccccccccHHHHhcccC--CCCCCCCCCCCeEEEEeCCCCCCCCcEEEEecHHHHHHHHHHHHhh-----CC
Confidence                   000112334555543321  1223345778999999999999999999999999999888776666     78


Q ss_pred             CCCcEEEEecChhHHHHHHH-HHHHhhcCcEEEEecC-ChhhHHHHhhhhcCeEEEechHHHHHHHHHHHHHHHhhchHH
Q 006111          264 TVDDVYLSFLPLAHILDRVI-EEYFFRRGASVGYYHG-DLNALRDDLMELKPTLLAGVPRVFEKIHEGIKKALEELRPLR  341 (660)
Q Consensus       264 ~~~~~~l~~~pl~~~~g~~~-~l~~l~~G~~~v~~~~-~~~~~~~~i~~~~~t~~~~~p~~~~~l~~~~~~~~~~~~~~~  341 (660)
                      ..+|++++.+|++|.+|+.. ++.++..|+++++.+. ++..+++.++++++|++.++|.++..+.....          
T Consensus       229 ~~~d~~l~~~p~~~~~g~~~~~~~~l~~G~~i~~~~~~~~~~~~~~i~~~~~t~~~~~p~~~~~ll~~~~----------  298 (546)
T PRK08314        229 TPESVVLAVLPLFHVTGMVHSMNAPIYAGATVVLMPRWDREAAARLIERYRVTHWTNIPTMVVDFLASPG----------  298 (546)
T ss_pred             CCCceEEEEcCchHHHHHHHHHHHHHHcCCeEEecCCCCHHHHHHHHHHhcCceecccHHHHHHHHhCCC----------
Confidence            89999999999999999865 5678999999999886 88999999999999999999999887754210          


Q ss_pred             HHHHHHHHHHHHHHHhhCCCCCCcchhhhHHHHHHHHHHhCCcEeEEEEccCCCCHHHHHHHHHhcCCceeeecCCCCCC
Q 006111          342 RRIFDALYKYKLAWMNMGYKQREASPLADLLAFRKVKARLGGRLRLVISGGAPLSTEVEEFLRVTCCAFLVQGYGLTETC  421 (660)
Q Consensus       342 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lr~i~~~G~~l~~~~~~~~~~~~~~~v~~~YG~tE~~  421 (660)
                                                 ....++        +++|.+++||+++++++.+++.+.++.++++.||+||++
T Consensus       299 ---------------------------~~~~~~--------~~l~~~~~gG~~~~~~~~~~~~~~~~~~~~~~YG~tE~~  343 (546)
T PRK08314        299 ---------------------------LAERDL--------SSLRYIGGGGAAMPEAVAERLKELTGLDYVEGYGLTETM  343 (546)
T ss_pred             ---------------------------ccccCc--------hhhheeeeccccCCHHHHHHHHHHcCCcEEecccccccc
Confidence                                       111112        378999999999999999999998899999999999999


Q ss_pred             CceecccCCCccccCccCCCccCeeEEeeecCCCCCCCCCCCCCceEEEccCCcccccCCCchhhhhccc--C--Ccccc
Q 006111          422 GPTTVCFPDEMCMVGTAGPVSVYSELRLEEVPEMGYSPLDDPPCGEVCVRGKTLFSGYYKNPDLTRESII--D--GWFHT  497 (660)
Q Consensus       422 ~~~~~~~~~~~~~~~~~G~~~~~~~v~ivd~~~~~~~~~~~~~~Gei~v~g~~~~~gy~~~~~~~~~~~~--~--g~~~T  497 (660)
                      ........... ..+++|.|+++++++++| ++.+ ..++.++.|||+|+|++++.||+++++.+.+.|.  +  +||+|
T Consensus       344 ~~~~~~~~~~~-~~~~~G~~~~g~~~~i~d-~~~~-~~~~~g~~Gel~v~g~~~~~gY~~~~~~t~~~f~~~~~~~~~~T  420 (546)
T PRK08314        344 AQTHSNPPDRP-KLQCLGIPTFGVDARVID-PETL-EELPPGEVGEIVVHGPQVFKGYWNRPEATAEAFIEIDGKRFFRT  420 (546)
T ss_pred             cceecCCCcCC-CCCccCcccCCeEEEEEe-CCCC-cCCCCCCceEEEEECCchhccccCChhHhhhhhhhcCCCceEec
Confidence            87665544332 347899999999999999 5433 3344567899999999999999999999988872  3  49999


Q ss_pred             CceEEECCCCcEEEEeccCCeeEcCCCeeecchhHHHHHhcCcCcceEEEEecCCC---CeEEEEEEcChhhHHHHHHHC
Q 006111          498 GDIGQILPNGVVKIIDRKKNLIKISQGEYVALEYLENVYCVAPIIEDIWVYGDSLK---SMLVAVVVPCEEDTKKWAYSN  574 (660)
Q Consensus       498 GDl~~~~~~G~l~~~GR~~d~i~~~~G~~v~~~~iE~~l~~~p~V~~~~V~~~~~~---~~~~a~v~~~~~~~~~~~~~~  574 (660)
                      ||+|+++++|.+++.||.||+|++ +|++|+|.+||++|.++|+|.+++|++.++.   +.++++|+++++..       
T Consensus       421 GDl~~~~~~g~l~~~GR~~d~i~~-~G~~v~~~eIE~~i~~~~~v~~~~v~~~~~~~~~~~~~a~v~~~~~~~-------  492 (546)
T PRK08314        421 GDLGRMDEEGYFFITDRLKRMINA-SGFKVWPAEVENLLYKHPAIQEACVIATPDPRRGETVKAVVVLRPEAR-------  492 (546)
T ss_pred             CCEEEEcCCCcEEEEecchhhEEe-CCEEECHHHHHHHHHhCcchheEEEEeCCCcccCceeEEEEEECCCCC-------
Confidence            999999999999999999999997 7999999999999999999999999987654   47899999876531       


Q ss_pred             CCCCcHHHHhccHHHHHHHHHHHHHHHHhCCCCCceeeeEEEEecCCCCCCCCccccccccchHHHHHHHHH
Q 006111          575 GHAGSFLELCSLVQLQNYILSELKNAAERNKLRGFEHIKGVILDPRPFDMERDLVTATLKKKRNKLLIYYQV  646 (660)
Q Consensus       575 ~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~l~~~~~p~~i~~~~~~~~~~~~P~t~~GKv~R~~l~~~~~~  646 (660)
                         ..+    .        .++++++++ .+|+.|++|+.+.+++      .+|+|++||++|++|++....
T Consensus       493 ---~~~----~--------~~~l~~~~~-~~l~~~~~P~~~~~v~------~iP~t~~GKv~r~~L~~~~~~  542 (546)
T PRK08314        493 ---GKT----T--------EEEIIAWAR-EHMAAYKYPRIVEFVD------SLPKSGSGKILWRQLQEQEKA  542 (546)
T ss_pred             ---CCC----C--------HHHHHHHHH-HhcccCCCCcEEEEec------CCCCCCccceeHHHHHHHHhh
Confidence               000    0        134455554 6899999999999974      458999999999999876544

>PRK06839 acyl-CoA synthetase; Validated

Probab=100.00  E-value=7.7e-63  Score=540.99  Aligned_cols=487  Identities=22%  Similarity=0.254  Sum_probs=398.8

Q ss_pred             CCcHHHHHHHHHHhCCCCCceeeeccccCCCCCceEEeHHHHHHHHHHHHHHHHH-cCCCCCCEEEEEeCCchhHHHHHH
Q 006111           41 LNTAWDIFSMSVQKYPGNRMLGWRPFVDGKFGPYVWKTYKEVYEEVLQIVSALRA-SGAEPGCRVGIYGANCPQWVEAME  119 (660)
Q Consensus        41 ~~ti~~~l~~~a~~~pd~~a~~~~~~~d~~~~~~~~~Ty~ql~~~v~~lA~~L~~-~Gl~~gd~V~l~~~n~~e~~~~~l  119 (660)
                      +..+.+.|+++|+++||++|+++.    +     +.+||.||.++++++|+.|++ .|+++||+|+++++|+++++++++
T Consensus         1 ~~~~~~~~~~~a~~~p~~~a~~~~----~-----~~~ty~~l~~~~~~la~~L~~~~g~~~~~~V~i~~~~~~~~~~~~l   71 (496)
T PRK06839          1 MQGIAYWIEKRAYLHPDRIAIITE----E-----EEMTYKQLHEYVSKVAAYLIYELNVKKGERIAILSQNSLEYIVLLF   71 (496)
T ss_pred             CccHHHHHHHHHHHCCCCeEEEEC----C-----ceEEHHHHHHHHHHHHHHHHHhcCCCCCCEEEEECCCCHHHHHHHH
Confidence            356889999999999999999864    3     589999999999999999985 699999999999999999999999


Q ss_pred             HHHhCCCeEEecCCCCChhHHHHHHhcccceEEEEccchhhhhhccccccccCccEEEEecCCcHHHHHHHhhCCcceee
Q 006111          120 ACNALSLICVPLYDTLGPGAVNFILDHAEIDFVFVQDKKVKELLSPDCRSAQRLRVMVCFTSLTAEQKEMAVQTGIKPYS  199 (660)
Q Consensus       120 A~~~~G~~~vpl~~~~~~~~l~~~l~~~~~~~ii~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~  199 (660)
                      ||+++|++++|+++.++.+++..+++.+++++++++......+..... . .....++.+.+                  
T Consensus        72 a~~~~G~~~~~~~~~~~~~~~~~~l~~~~~~~i~~~~~~~~~~~~~~~-~-~~~~~~~~~~~------------------  131 (496)
T PRK06839         72 AIAKVECIAVPLNIRLTENELIFQLKDSGTTVLFVEKTFQNMALSMQK-V-SYVQRVISITS------------------  131 (496)
T ss_pred             HHHhcCcEEEecCcccCHHHHHHHHHhcCceEEEEcHHHHHHHHHhhh-c-cCcceEEEecc------------------
Confidence            999999999999999999999999999999999998876554322111 1 11222333321                  


Q ss_pred             HHHHHhcCccCCccCCCCCCCceEEEEecCCCCCCCceeeecchhHHHHhhhhhhhcccccCCCCCCcEEEEecChhHHH
Q 006111          200 WDEFLHLGKVNEMEILPPQPFNICTIMYTSGTSGDPKGVVLTHETIATFVSGVDLFLDQFEDKMTVDDVYLSFLPLAHIL  279 (660)
Q Consensus       200 ~~~~~~~~~~~~~~~~~~~~~~~~~i~~TSGTTG~pK~v~~th~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~pl~~~~  279 (660)
                      +.++....   .....+..++++++++|||||||.||+|.++|.++..........+     ++..+++++..+|++|.+
T Consensus       132 ~~~~~~~~---~~~~~~~~~~~~~~i~~TSGTTG~PK~v~~s~~~l~~~~~~~~~~~-----~~~~~d~~l~~~p~~~~~  203 (496)
T PRK06839        132 LKEIEDRK---IDNFVEKNESASFIICYTSGTTGKPKGAVLTQENMFWNALNNTFAI-----DLTMHDRSIVLLPLFHIG  203 (496)
T ss_pred             hHhhhccC---CCCCCCCCCCCcEEEEeCCCCCCCCcEEEEEhHHHHHHHHHHHHHc-----CCCCCCeEEEeeCCcchh
Confidence            22222111   1122344668999999999999999999999999876655544444     678899999999999999


Q ss_pred             HHHH-HHHHhhcCcEEEEecC-ChhhHHHHhhhhcCeEEEechHHHHHHHHHHHHHHHhhchHHHHHHHHHHHHHHHHHh
Q 006111          280 DRVI-EEYFFRRGASVGYYHG-DLNALRDDLMELKPTLLAGVPRVFEKIHEGIKKALEELRPLRRRIFDALYKYKLAWMN  357 (660)
Q Consensus       280 g~~~-~l~~l~~G~~~v~~~~-~~~~~~~~i~~~~~t~~~~~p~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  357 (660)
                      |+.. .+.++..|+++++.+. ++..+++.++++++|++.++|.+++.+.......                        
T Consensus       204 g~~~~~~~~l~~g~~~~~~~~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~------------------------  259 (496)
T PRK06839        204 GIGLFAFPTLFAGGVIIVPRKFEPTKALSMIEKHKVTVVMGVPTIHQALINCSKFE------------------------  259 (496)
T ss_pred             hHHHHHHHHHhcCcEEEEccCCCHHHHHHHHHhhCCeEEEehHHHHHHHHhCcccc------------------------
Confidence            8876 4667999999988766 9999999999999999999999999886532110                        


Q ss_pred             hCCCCCCcchhhhHHHHHHHHHHhCCcEeEEEEccCCCCHHHHHHHHHhcCCceeeecCCCCCCCceecccCC-CccccC
Q 006111          358 MGYKQREASPLADLLAFRKVKARLGGRLRLVISGGAPLSTEVEEFLRVTCCAFLVQGYGLTETCGPTTVCFPD-EMCMVG  436 (660)
Q Consensus       358 ~~~~~~~~~~~~~~~~~~~~~~~~~~~lr~i~~~G~~l~~~~~~~~~~~~~~~v~~~YG~tE~~~~~~~~~~~-~~~~~~  436 (660)
                                   ..        ..+++|.+++||+++++++.+.+.+. |+++.+.||+||++..++..... .....+
T Consensus       260 -------------~~--------~~~~lr~~~~gG~~~~~~~~~~~~~~-g~~~~~~YG~tE~~~~~~~~~~~~~~~~~~  317 (496)
T PRK06839        260 -------------TT--------NLQSVRWFYNGGAPCPEELMREFIDR-GFLFGQGFGMTETSPTVFMLSEEDARRKVG  317 (496)
T ss_pred             -------------cC--------CCcccceEEECCCCCCHHHHHHHHHh-CCeeEeeccCCCCCcceEecccccccccCC
Confidence                         00        11489999999999999999999886 99999999999999765544332 234458


Q ss_pred             ccCCCccCeeEEeeecCCCCCCCCCCCCCceEEEccCCcccccCCCchhhhhcccCCccccCceEEECCCCcEEEEeccC
Q 006111          437 TAGPVSVYSELRLEEVPEMGYSPLDDPPCGEVCVRGKTLFSGYYKNPDLTRESIIDGWFHTGDIGQILPNGVVKIIDRKK  516 (660)
Q Consensus       437 ~~G~~~~~~~v~ivd~~~~~~~~~~~~~~Gei~v~g~~~~~gy~~~~~~~~~~~~~g~~~TGDl~~~~~~G~l~~~GR~~  516 (660)
                      ++|.|+++++++|+| +++..  ++.|+.|||+|+|+.++.||+++++.+...+.+|||+|||+|+++++|.+++.||.+
T Consensus       318 ~~G~p~~~~~~~i~d-~~~~~--~~~g~~Gel~v~~~~~~~gy~~~~~~~~~~~~~g~~~TGDl~~~~~~g~~~~~GR~~  394 (496)
T PRK06839        318 SIGKPVLFCDYELID-ENKNK--VEVGEVGELLIRGPNVMKEYWNRPDATEETIQDGWLCTGDLARVDEDGFVYIVGRKK  394 (496)
T ss_pred             CCcccCCCceEEEEC-CCcCC--CCCCCceEEEEECCCcchhhcCChHHHHHHHcCCCeeecceEEEcCCCcEEEecccc
Confidence            999999999999999 77765  556689999999999999999999999988899999999999999999999999999


Q ss_pred             CeeEcCCCeeecchhHHHHHhcCcCcceEEEEecCCC---CeEEEEEEcChhhHHHHHHHCCCCCcHHHHhccHHHHHHH
Q 006111          517 NLIKISQGEYVALEYLENVYCVAPIIEDIWVYGDSLK---SMLVAVVVPCEEDTKKWAYSNGHAGSFLELCSLVQLQNYI  593 (660)
Q Consensus       517 d~i~~~~G~~v~~~~iE~~l~~~p~V~~~~V~~~~~~---~~~~a~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  593 (660)
                      |+|+. +|.+|+|.+||+.|.++|+|.+|+|++.++.   +.++++|+++++..        .        .        
T Consensus       395 d~i~~-~G~~v~p~~iE~~l~~~~~v~~~~v~~~~~~~~g~~~~~~v~~~~~~~--------~--------~--------  449 (496)
T PRK06839        395 EMIIS-GGENIYPLEVEQVINKLSDVYEVAVVGRQHVKWGEIPIAFIVKKSSSV--------L--------I--------  449 (496)
T ss_pred             ceEEE-CCEEECHHHHHHHHHhCCCeeEEEEEeccccccCceEEEEEEECCCCC--------C--------C--------
Confidence            99996 8999999999999999999999999997654   37889999876420        0        1        


Q ss_pred             HHHHHHHHHhCCCCCceeeeEEEEecCCCCCCCCccccccccchHHHHHHHH
Q 006111          594 LSELKNAAERNKLRGFEHIKGVILDPRPFDMERDLVTATLKKKRNKLLIYYQ  645 (660)
Q Consensus       594 ~~~l~~~~~~~~l~~~~~p~~i~~~~~~~~~~~~P~t~~GKv~R~~l~~~~~  645 (660)
                      .++|+++++ ..|+.|++|..+++++      .+|+|++||++|++|+++.+
T Consensus       450 ~~~l~~~~~-~~l~~~~~P~~~~~v~------~~P~t~~GKi~r~~l~~~~~  494 (496)
T PRK06839        450 EKDVIEHCR-LFLAKYKIPKEIVFLK------ELPKNATGKIQKAQLVNQLK  494 (496)
T ss_pred             HHHHHHHHH-hhCcCCCCCcEEEEec------cCCCCccccccHHHHHHHhh
Confidence            123444444 6799999999999874      45899999999999997654

>PRK13382 acyl-CoA synthetase; Provisional

Probab=100.00  E-value=6.7e-63  Score=545.04  Aligned_cols=490  Identities=20%  Similarity=0.186  Sum_probs=394.7

Q ss_pred             CcHHHHHHHHHHhCCCCCceeeeccccCCCCCceEEeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEeCCchhHHHHHHHH
Q 006111           42 NTAWDIFSMSVQKYPGNRMLGWRPFVDGKFGPYVWKTYKEVYEEVLQIVSALRASGAEPGCRVGIYGANCPQWVEAMEAC  121 (660)
Q Consensus        42 ~ti~~~l~~~a~~~pd~~a~~~~~~~d~~~~~~~~~Ty~ql~~~v~~lA~~L~~~Gl~~gd~V~l~~~n~~e~~~~~lA~  121 (660)
                      .++.+.|.++++++||++|++..   +      +.+||.||.++++++|.+|.+.|+++||+|+++++|++++++++|||
T Consensus        43 ~~~~~~l~~~a~~~p~~~a~~~~---~------~~~Ty~el~~~~~~~A~~L~~~g~~~g~~V~i~~~n~~~~~~~~lA~  113 (537)
T PRK13382         43 MGPTSGFAIAAQRCPDRPGLIDE---L------GTLTWRELDERSDALAAALQALPIGEPRVVGIMCRNHRGFVEALLAA  113 (537)
T ss_pred             CCHHHHHHHHHHhCCCCeEEEeC---C------CeecHHHHHHHHHHHHHHHHHcCCCCCCEEEEEecCcHHHHHHHHHH
Confidence            57999999999999999999864   3      47999999999999999999999999999999999999999999999


Q ss_pred             HhCCCeEEecCCCCChhHHHHHHhcccceEEEEccchhhhhhccccccccCccEEEEecCCcHHHHHHHhhCCcceeeHH
Q 006111          122 NALSLICVPLYDTLGPGAVNFILDHAEIDFVFVQDKKVKELLSPDCRSAQRLRVMVCFTSLTAEQKEMAVQTGIKPYSWD  201 (660)
Q Consensus       122 ~~~G~~~vpl~~~~~~~~l~~~l~~~~~~~ii~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~  201 (660)
                      +++|++++|+++.++.+++.++++.++++++|++......+..... ..+....++...+..            ....++
T Consensus       114 ~~~G~~~vpl~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~------------~~~~~~  180 (537)
T PRK13382        114 NRIGADILLLNTSFAGPALAEVVTREGVDTVIYDEEFSATVDRALA-DCPQATRIVAWTDED------------HDLTVE  180 (537)
T ss_pred             HHcCcEEEecCcccCHHHHHHHHHhcCCCEEEEchhhHHHHHHHHh-hccccceEEEecCCc------------ccccHH
Confidence            9999999999999999999999999999999998876554432211 112222233332211            012333


Q ss_pred             HHHhcCccCCccCCCCCCCceEEEEecCCCCCCCceeeecchhHHHHhhhhhhhcccccCCCCCCcEEEEecChhHHHHH
Q 006111          202 EFLHLGKVNEMEILPPQPFNICTIMYTSGTSGDPKGVVLTHETIATFVSGVDLFLDQFEDKMTVDDVYLSFLPLAHILDR  281 (660)
Q Consensus       202 ~~~~~~~~~~~~~~~~~~~~~~~i~~TSGTTG~pK~v~~th~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~pl~~~~g~  281 (660)
                      .+......   ......+++.++++|||||||.||+|.++|.++......+...+     .+..+++++...|++|.+++
T Consensus       181 ~~~~~~~~---~~~~~~~~~~~~il~TSGTTG~PKgv~~s~~~~~~~~~~~~~~~-----~~~~~~~~l~~~p~~~~~g~  252 (537)
T PRK13382        181 VLIAAHAG---QRPEPTGRKGRVILLTSGTTGTPKGARRSGPGGIGTLKAILDRT-----PWRAEEPTVIVAPMFHAWGF  252 (537)
T ss_pred             HHhhccCc---CCCCCCCCCCeEEEECCCCCCCCCEEEeccchHHHHHHHHHHhh-----CCCCCCeEEEecChHhhhHH
Confidence            33332211   11123468899999999999999999999998887777665555     67788999999999999998


Q ss_pred             HHHHHHhhcCcEEEEecC-ChhhHHHHhhhhcCeEEEechHHHHHHHHHHHHHHHhhchHHHHHHHHHHHHHHHHHhhCC
Q 006111          282 VIEEYFFRRGASVGYYHG-DLNALRDDLMELKPTLLAGVPRVFEKIHEGIKKALEELRPLRRRIFDALYKYKLAWMNMGY  360 (660)
Q Consensus       282 ~~~l~~l~~G~~~v~~~~-~~~~~~~~i~~~~~t~~~~~p~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  360 (660)
                      ...+.++..|+++++... ++..+++.|+++++|++.++|+++..+.+......                          
T Consensus       253 ~~~~~~l~~g~~~~~~~~~~~~~~~~~i~~~~vt~~~~~P~~~~~l~~~~~~~~--------------------------  306 (537)
T PRK13382        253 SQLVLAASLACTIVTRRRFDPEATLDLIDRHRATGLAVVPVMFDRIMDLPAEVR--------------------------  306 (537)
T ss_pred             HHHHHHHhcCcEEEECCCcCHHHHHHHHHHhCCEEEEehHHHHHHHHcCCchhc--------------------------
Confidence            777888999999888765 89999999999999999999999998865211100                          


Q ss_pred             CCCCcchhhhHHHHHHHHHHhCCcEeEEEEccCCCCHHHHHHHHHhcCCceeeecCCCCCCCceecccCCCccccCccCC
Q 006111          361 KQREASPLADLLAFRKVKARLGGRLRLVISGGAPLSTEVEEFLRVTCCAFLVQGYGLTETCGPTTVCFPDEMCMVGTAGP  440 (660)
Q Consensus       361 ~~~~~~~~~~~~~~~~~~~~~~~~lr~i~~~G~~l~~~~~~~~~~~~~~~v~~~YG~tE~~~~~~~~~~~~~~~~~~~G~  440 (660)
                               +..+        .+++|.+++||+++++++.+.|.+.++.++++.||+||++.+++.++......++++|.
T Consensus       307 ---------~~~~--------~~~lr~i~~gG~~l~~~~~~~~~~~~~~~i~~~YG~TE~~~~~~~~~~~~~~~~~~vG~  369 (537)
T PRK13382        307 ---------NRYS--------GRSLRFAAASGSRMRPDVVIAFMDQFGDVIYNNYNATEAGMIATATPADLRAAPDTAGR  369 (537)
T ss_pred             ---------ccCC--------ccceeEEEEcCCCCCHHHHHHHHHHcCCcEEecccccccCcceecChhHhccCCCCccc
Confidence                     0001        13899999999999999999999999999999999999998776554333344589999


Q ss_pred             CccCeeEEeeecCCCCCCCCCCCCCceEEEccCCcccccCCCchhhhhcccCCccccCceEEECCCCcEEEEeccCCeeE
Q 006111          441 VSVYSELRLEEVPEMGYSPLDDPPCGEVCVRGKTLFSGYYKNPDLTRESIIDGWFHTGDIGQILPNGVVKIIDRKKNLIK  520 (660)
Q Consensus       441 ~~~~~~v~ivd~~~~~~~~~~~~~~Gei~v~g~~~~~gy~~~~~~~~~~~~~g~~~TGDl~~~~~~G~l~~~GR~~d~i~  520 (660)
                      |+++++++++| +++..  ++.|+.|||+++|++++.||+  +..+. .|.+|||+|||+++++++|++++.||.+|+|+
T Consensus       370 p~~~~~~~i~d-~~~~~--~~~g~~GEl~v~g~~~~~gY~--~~~~~-~~~~g~~~TGDl~~~~~~g~l~~~GR~dd~ik  443 (537)
T PRK13382        370 PAEGTEIRILD-QDFRE--VPTGEVGTIFVRNDTQFDGYT--SGSTK-DFHDGFMASGDVGYLDENGRLFVVGRDDEMIV  443 (537)
T ss_pred             cCcCcEEEEEC-CCCCC--CCCCCeeEEEEEcCCcccCcc--ccchh-hccCCCEeeCceEEEeCCCcEEEeccccceeE
Confidence            99999999999 66654  445679999999999999998  33333 35689999999999999999999999999999


Q ss_pred             cCCCeeecchhHHHHHhcCcCcceEEEEecCCC---CeEEEEEEcChhhHHHHHHHCCCCCcHHHHhccHHHHHHHHHHH
Q 006111          521 ISQGEYVALEYLENVYCVAPIIEDIWVYGDSLK---SMLVAVVVPCEEDTKKWAYSNGHAGSFLELCSLVQLQNYILSEL  597 (660)
Q Consensus       521 ~~~G~~v~~~~iE~~l~~~p~V~~~~V~~~~~~---~~~~a~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l  597 (660)
                      . +|++|+|.+||+.|.+||+|.+|+|++.++.   +.++++|++.++..                        ...+++
T Consensus       444 ~-~G~~v~~~eIE~~l~~~~~V~~~~v~~~~~~~~g~~~~a~vv~~~~~~------------------------~~~~~l  498 (537)
T PRK13382        444 S-GGENVYPIEVEKTLATHPDVAEAAVIGVDDEQYGQRLAAFVVLKPGAS------------------------ATPETL  498 (537)
T ss_pred             E-CCEEECHHHHHHHHHhCCCEeeEEEEccCccccCCEEEEEEEECCCCC------------------------CCHHHH
Confidence            6 8999999999999999999999999997754   46889998876420                        001334


Q ss_pred             HHHHHhCCCCCceeeeEEEEecCCCCCCCCccccccccchHHHHH
Q 006111          598 KNAAERNKLRGFEHIKGVILDPRPFDMERDLVTATLKKKRNKLLI  642 (660)
Q Consensus       598 ~~~~~~~~l~~~~~p~~i~~~~~~~~~~~~P~t~~GKv~R~~l~~  642 (660)
                      +++++ ..|+.|++|..+.+++      .+|+|++||++|++|++
T Consensus       499 ~~~l~-~~l~~~~~P~~i~~v~------~lP~t~~gK~~r~~L~~  536 (537)
T PRK13382        499 KQHVR-DNLANYKVPRDIVVLD------ELPRGATGKILRRELQA  536 (537)
T ss_pred             HHHHH-HhccCCCCCcEEEEec------cCCCCCCCCCcHHhhCC
Confidence            44444 6899999999999874      45899999999999864

>PRK05620 long-chain-fatty-acid--CoA ligase; Validated

Probab=100.00  E-value=7.8e-63  Score=549.55  Aligned_cols=518  Identities=21%  Similarity=0.261  Sum_probs=409.9

Q ss_pred             CCcHHHHHHHHHHhCCCCCceeeeccccCCCCCceEEeHHHHHHHHHHHHHHHHH-cCCCCCCEEEEEeCCchhHHHHHH
Q 006111           41 LNTAWDIFSMSVQKYPGNRMLGWRPFVDGKFGPYVWKTYKEVYEEVLQIVSALRA-SGAEPGCRVGIYGANCPQWVEAME  119 (660)
Q Consensus        41 ~~ti~~~l~~~a~~~pd~~a~~~~~~~d~~~~~~~~~Ty~ql~~~v~~lA~~L~~-~Gl~~gd~V~l~~~n~~e~~~~~l  119 (660)
                      ..|+.++|++++..+|+++|+++.   +.   +++.+||.||.+++.++|.+|.+ .|+++||+|+++++|+++++++++
T Consensus         9 ~~~~~~~l~~~a~~~~~~~a~~~~---~~---~~~~~Ty~el~~~~~~la~~L~~~~g~~~gd~V~~~~~n~~e~~~~~l   82 (576)
T PRK05620          9 PLSLTRILEYGSTVHGDTTVTTWG---GA---EQEQTTFAAIGARAAALAHALHDELGITGDQRVGSMMYNCAEHLEVLF   82 (576)
T ss_pred             CCcHHHHHHHHHHhCCCceEEEEc---CC---ceEEEeHHHHHHHHHHHHHHHHHhcCCCCCCEEEEEeCCCHHHHHHHH
Confidence            368999999999999999999875   22   24789999999999999999986 799999999999999999999999


Q ss_pred             HHHhCCCeEEecCCCCChhHHHHHHhcccceEEEEccchhhhhhccccccccCccEEEEecCCcHHHHHHHhhCCcceee
Q 006111          120 ACNALSLICVPLYDTLGPGAVNFILDHAEIDFVFVQDKKVKELLSPDCRSAQRLRVMVCFTSLTAEQKEMAVQTGIKPYS  199 (660)
Q Consensus       120 A~~~~G~~~vpl~~~~~~~~l~~~l~~~~~~~ii~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~  199 (660)
                      ||+++|++++|+++..+.+++..+++.++++++|++......+.+... .......++..+..................+
T Consensus        83 A~~~~G~~~v~l~~~~~~~~l~~~l~~~~~~~~i~~~~~~~~~~~~~~-~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~  161 (576)
T PRK05620         83 AVACMGAVFNPLNKQLMNDQIVHIINHAEDEVIVADPRLAEQLGEILK-ECPCVRAVVFIGPSDADSAAAHMPEGIKVYS  161 (576)
T ss_pred             HHHhcCCEEeecccccCHHHHHHHHhccCCcEEEEChhhHHHHHHHHh-hCccccEEEEecCcccccchhcccccccccc
Confidence            999999999999999999999999999999999999876655433222 2334444555443211111111111223456


Q ss_pred             HHHHHhcCccCCccCCCCCCCceEEEEecCCCCCCCceeeecchhHHHHhhhhh--hhcccccCCCCCCcEEEEecChhH
Q 006111          200 WDEFLHLGKVNEMEILPPQPFNICTIMYTSGTSGDPKGVVLTHETIATFVSGVD--LFLDQFEDKMTVDDVYLSFLPLAH  277 (660)
Q Consensus       200 ~~~~~~~~~~~~~~~~~~~~~~~~~i~~TSGTTG~pK~v~~th~~l~~~~~~~~--~~~~~~~~~~~~~~~~l~~~pl~~  277 (660)
                      |.++.+.. ..........++++++++|||||||.||+|.++|+++........  ..+     .+..++++++.+|++|
T Consensus       162 ~~~l~~~~-~~~~~~~~~~~~~~a~i~~TSGTTG~PKgv~~s~~~l~~~~~~~~~~~~~-----~~~~~~~~l~~~pl~h  235 (576)
T PRK05620        162 YEALLDGR-STVYDWPELDETTAAAICYSTGTTGAPKGVVYSHRSLYLQSLSLRTTDSL-----AVTHGESFLCCVPIYH  235 (576)
T ss_pred             HHHHhhcC-CCcCCCCCCCccceeEEEECCCCCCCCceEEEEcHHHHHHHHHhhhhhhc-----CCCCCCeEEEeCChHH
Confidence            77777543 222223345678999999999999999999999999865544322  123     6788999999999999


Q ss_pred             HHHHHHHHHHhhcCcEEEEecC--ChhhHHHHhhhhcCeEEEechHHHHHHHHHHHHHHHhhchHHHHHHHHHHHHHHHH
Q 006111          278 ILDRVIEEYFFRRGASVGYYHG--DLNALRDDLMELKPTLLAGVPRVFEKIHEGIKKALEELRPLRRRIFDALYKYKLAW  355 (660)
Q Consensus       278 ~~g~~~~l~~l~~G~~~v~~~~--~~~~~~~~i~~~~~t~~~~~p~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  355 (660)
                      .+++...+.++..|+++++.+.  ++..+++.++++++|+++++|.++..++........                    
T Consensus       236 ~~g~~~~~~~l~~g~~~~~~~~~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~--------------------  295 (576)
T PRK05620        236 VLSWGVPLAAFMSGTPLVFPGPDLSAPTLAKIIATAMPRVAHGVPTLWIQLMVHYLKNPP--------------------  295 (576)
T ss_pred             hhhhHHHHHHHhcCceEEecCCCCCHHHHHHHHHHhcCceeeecCHHHHHHHHHhhccCc--------------------
Confidence            9998888888999999988753  899999999999999999999999887653211000                    


Q ss_pred             HhhCCCCCCcchhhhHHHHHHHHHHhCCcEeEEEEccCCCCHHHHHHHHHhcCCceeeecCCCCCCCceecccCCC----
Q 006111          356 MNMGYKQREASPLADLLAFRKVKARLGGRLRLVISGGAPLSTEVEEFLRVTCCAFLVQGYGLTETCGPTTVCFPDE----  431 (660)
Q Consensus       356 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lr~i~~~G~~l~~~~~~~~~~~~~~~v~~~YG~tE~~~~~~~~~~~~----  431 (660)
                                               ..+++|.+++||+.+++.+.+.|++.+|+++++.||+||++..++......    
T Consensus       296 -------------------------~~~~l~~~~~gG~~~~~~~~~~~~~~~~~~~~~~YG~tE~~~~~~~~~~~~~~~~  350 (576)
T PRK05620        296 -------------------------ERMSLQEIYVGGSAVPPILIKAWEERYGVDVVHVWGMTETSPVGTVARPPSGVSG  350 (576)
T ss_pred             -------------------------ccCceeEEEEcCCCCCHHHHHHHHHHhCCceeeeccccccccceeeeccCCcccc
Confidence                                     003799999999999999999999989999999999999998765543221    


Q ss_pred             ---ccccCccCCCccCeeEEeeecCCCCCCCCCCCCCceEEEccCCcccccCCCchhh----------------hhcc-c
Q 006111          432 ---MCMVGTAGPVSVYSELRLEEVPEMGYSPLDDPPCGEVCVRGKTLFSGYYKNPDLT----------------RESI-I  491 (660)
Q Consensus       432 ---~~~~~~~G~~~~~~~v~ivd~~~~~~~~~~~~~~Gei~v~g~~~~~gy~~~~~~~----------------~~~~-~  491 (660)
                         .....++|++.+++++++++ + +...+...++.|||+++|+.++.||++++..+                ...| .
T Consensus       351 ~~~~~~~~~~G~~~~~~~~~i~~-~-g~~~~~~~~~~Gel~v~g~~~~~gY~~~~~~t~~~~~~~f~~~~~~~~~~~~~~  428 (576)
T PRK05620        351 EARWAYRVSQGRFPASLEYRIVN-D-GQVMESTDRNEGEIQVRGNWVTASYYHSPTEEGGGAASTFRGEDVEDANDRFTA  428 (576)
T ss_pred             ccccccccccCCcCCceeEEEec-C-CccccCCCCCceEEEEEcCcccccccCCccccccccccccccccchhhhccccc
Confidence               11235789999999999998 5 55444444578999999999999999998877                2234 5


Q ss_pred             CCccccCceEEECCCCcEEEEeccCCeeEcCCCeeecchhHHHHHhcCcCcceEEEEecCCC---CeEEEEEEcChhhHH
Q 006111          492 DGWFHTGDIGQILPNGVVKIIDRKKNLIKISQGEYVALEYLENVYCVAPIIEDIWVYGDSLK---SMLVAVVVPCEEDTK  568 (660)
Q Consensus       492 ~g~~~TGDl~~~~~~G~l~~~GR~~d~i~~~~G~~v~~~~iE~~l~~~p~V~~~~V~~~~~~---~~~~a~v~~~~~~~~  568 (660)
                      +|||+|||++++++||.+++.||.+|+|+. +|.+|+|.+||++|.+||.|.+|+|++.++.   +.+++++++.++.. 
T Consensus       429 ~g~~~TGD~~~~~~dg~l~~~GR~~d~i~~-~G~~i~~~eIE~~l~~~p~v~~~~vv~~~~~~~g~~~~a~v~~~~~~~-  506 (576)
T PRK05620        429 DGWLRTGDVGSVTRDGFLTIHDRARDVIRS-GGEWIYSAQLENYIMAAPEVVECAVIGYPDDKWGERPLAVTVLAPGIE-  506 (576)
T ss_pred             CCcEecCceEEEcCCceEEEEechhhhhhc-CCEEEcHHHHHHHHhcCCCceEEEEEeccCCCcCceeEEEEEecCCCC-
Confidence            789999999999999999999999999995 8999999999999999999999999997764   37888888776431 


Q ss_pred             HHHHHCCCCCcHHHHhccHHHHHHHHHHHHHHHHhCCCCCceeeeEEEEecCCCCCCCCccccccccchHHHHHHHHHH
Q 006111          569 KWAYSNGHAGSFLELCSLVQLQNYILSELKNAAERNKLRGFEHIKGVILDPRPFDMERDLVTATLKKKRNKLLIYYQVE  647 (660)
Q Consensus       569 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~l~~~~~p~~i~~~~~~~~~~~~P~t~~GKv~R~~l~~~~~~~  647 (660)
                                       ..   ....++|+++++ .+|++|++|+.|++++      .+|+|++||++|++|++++++.
T Consensus       507 -----------------~~---~~~~~~l~~~l~-~~L~~~~~P~~i~~v~------~~P~t~~GKv~r~~L~~~~~~~  558 (576)
T PRK05620        507 -----------------PT---RETAERLRDQLR-DRLPNWMLPEYWTFVD------EIDKTSVGKFDKKDLRQHLADG  558 (576)
T ss_pred             -----------------cc---cccHHHHHHHHH-hhCccccCCeEEEEec------cCCCCCcccCcHHHHHHHHhcC
Confidence                             00   011244555554 7899999999999874      4589999999999999999864

>PRK07656 long-chain-fatty-acid--CoA ligase; Validated

Probab=100.00  E-value=1.1e-62  Score=542.32  Aligned_cols=502  Identities=24%  Similarity=0.329  Sum_probs=413.6

Q ss_pred             CCCCcHHHHHHHHHHhCCCCCceeeeccccCCCCCceEEeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEeCCchhHHHHH
Q 006111           39 SDLNTAWDIFSMSVQKYPGNRMLGWRPFVDGKFGPYVWKTYKEVYEEVLQIVSALRASGAEPGCRVGIYGANCPQWVEAM  118 (660)
Q Consensus        39 ~~~~ti~~~l~~~a~~~pd~~a~~~~~~~d~~~~~~~~~Ty~ql~~~v~~lA~~L~~~Gl~~gd~V~l~~~n~~e~~~~~  118 (660)
                      .++.++.+.|+..++.+|+++|+.+.   +      +++||.||.+.+.++|..|.+.|+++||+|+++++|++++++++
T Consensus         2 ~~~~~i~~~l~~~~~~~~~~~a~~~~---~------~~~Ty~~l~~~~~~~a~~L~~~gv~~g~~V~l~~~~~~~~~~~~   72 (513)
T PRK07656          2 NEWMTLPELLARAARRFGDKEAYVFG---D------QRLTYAELNARVRRAAAALAALGIGKGDRVAIWAPNSPHWVIAA   72 (513)
T ss_pred             CccccHHHHHHHHHHHCCCCeEEEeC---C------CceeHHHHHHHHHHHHHHHHHcCCCCCCEEEEECCCChHHHHHH
Confidence            45789999999999999999999875   3      47999999999999999999999999999999999999999999


Q ss_pred             HHHHhCCCeEEecCCCCChhHHHHHHhcccceEEEEccchhhhhhccccccccCccEEEEecCCcHHHHHHHhhCCccee
Q 006111          119 EACNALSLICVPLYDTLGPGAVNFILDHAEIDFVFVQDKKVKELLSPDCRSAQRLRVMVCFTSLTAEQKEMAVQTGIKPY  198 (660)
Q Consensus       119 lA~~~~G~~~vpl~~~~~~~~l~~~l~~~~~~~ii~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~  198 (660)
                      +||+++|++++|+++..+.+.+..+++.++++++++++.......... ........++........      .......
T Consensus        73 la~~~~G~~~v~l~~~~~~~~~~~~l~~~~~~~ii~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~------~~~~~~~  145 (513)
T PRK07656         73 LGALKAGAVVVPLNTRYTADEAAYILARGDAKALFVLGLFLGVDYSAT-TRLPALEHVVICETEEDD------PHTEKMK  145 (513)
T ss_pred             HHHHhcCeEEEecCcccCHHHHHHHHhhcCceEEEEchhhHHHHHHHH-hccCCccEEEEEcCcccc------cCccccc
Confidence            999999999999999999999999999999999999987665443322 222334444444332110      0001224


Q ss_pred             eHHHHHhcCccCCccCCCCCCCceEEEEecCCCCCCCceeeecchhHHHHhhhhhhhcccccCCCCCCcEEEEecChhHH
Q 006111          199 SWDEFLHLGKVNEMEILPPQPFNICTIMYTSGTSGDPKGVVLTHETIATFVSGVDLFLDQFEDKMTVDDVYLSFLPLAHI  278 (660)
Q Consensus       199 ~~~~~~~~~~~~~~~~~~~~~~~~~~i~~TSGTTG~pK~v~~th~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~pl~~~  278 (660)
                      +|.++...... ........++++++++|||||||.||+|.++|.++...+..+...+     ++..++++++.+|++|.
T Consensus       146 ~~~~~~~~~~~-~~~~~~~~~~~~a~i~~TSGtTG~PK~v~~s~~~l~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~  219 (513)
T PRK07656        146 TFTDFLAAGDP-AERAPEVDPDDVADILFTSGTTGRPKGAMLTHRQLLSNAADWAEYL-----GLTEGDRYLAANPFFHV  219 (513)
T ss_pred             cHHHHHhcCCC-CCCcCCCCCCceEEEEeCCCCCCCCCEEEEecHHHHHHHHHHHHhh-----CCCCCCeEEEccchHHH
Confidence            56666654321 2233456789999999999999999999999999998888877766     78899999999999999


Q ss_pred             HHHHH-HHHHhhcCcEEEEecC-ChhhHHHHhhhhcCeEEEechHHHHHHHHHHHHHHHhhchHHHHHHHHHHHHHHHHH
Q 006111          279 LDRVI-EEYFFRRGASVGYYHG-DLNALRDDLMELKPTLLAGVPRVFEKIHEGIKKALEELRPLRRRIFDALYKYKLAWM  356 (660)
Q Consensus       279 ~g~~~-~l~~l~~G~~~v~~~~-~~~~~~~~i~~~~~t~~~~~p~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  356 (660)
                      +++.. .+.+++.|+++++.+. ++..+++.|+++++|+++++|.++..+.+......                      
T Consensus       220 ~~~~~~~~~~l~~G~~~~~~~~~~~~~~~~~i~~~~~t~~~~~p~~~~~l~~~~~~~~----------------------  277 (513)
T PRK07656        220 FGYKAGVNAPLMRGATILPLPVFDPDEVFRLIETERITVLPGPPTMYNSLLQHPDRSA----------------------  277 (513)
T ss_pred             HHHHHHHHHHHHcCceEEecCcCCHHHHHHHHHHhCCeEEechHHHHHHHHcCCCcCC----------------------
Confidence            99876 6777999999988765 89999999999999999999999998875321110                      


Q ss_pred             hhCCCCCCcchhhhHHHHHHHHHHhCCcEeEEEEccCCCCHHHHHHHHHhcCC-ceeeecCCCCCCCceecccCCCccc-
Q 006111          357 NMGYKQREASPLADLLAFRKVKARLGGRLRLVISGGAPLSTEVEEFLRVTCCA-FLVQGYGLTETCGPTTVCFPDEMCM-  434 (660)
Q Consensus       357 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~lr~i~~~G~~l~~~~~~~~~~~~~~-~v~~~YG~tE~~~~~~~~~~~~~~~-  434 (660)
                                     ..        .+++|.+++||+++++++.+.+.+.++. ++++.||+||++++++.+....... 
T Consensus       278 ---------------~~--------~~~l~~v~~~g~~~~~~~~~~~~~~~~~~~~~~~YG~tE~~~~~~~~~~~~~~~~  334 (513)
T PRK07656        278 ---------------ED--------LSSLRLAVTGAASMPVALLERFESELGVDIVLTGYGLSEASGVTTFNRLDDDRKT  334 (513)
T ss_pred             ---------------CC--------ccceeeEEecCCCCCHHHHHHHHHHcCCCceEeEEccccCCCceeecCccccccc
Confidence                           01        1489999999999999999999999988 8999999999988887766544322 


Q ss_pred             -cCccCCCccCeeEEeeecCCCCCCCCCCCCCceEEEccCCcccccCCCchhhhhccc-CCccccCceEEECCCCcEEEE
Q 006111          435 -VGTAGPVSVYSELRLEEVPEMGYSPLDDPPCGEVCVRGKTLFSGYYKNPDLTRESII-DGWFHTGDIGQILPNGVVKII  512 (660)
Q Consensus       435 -~~~~G~~~~~~~v~ivd~~~~~~~~~~~~~~Gei~v~g~~~~~gy~~~~~~~~~~~~-~g~~~TGDl~~~~~~G~l~~~  512 (660)
                       .+++|.|+++++++++| +++..  ++.|+.|||+++|+.++.||++++..+...+. +|||+|||+|+++++|.++++
T Consensus       335 ~~~~vG~~~~~~~~~i~d-~~~~~--~~~g~~Gel~v~~~~~~~gy~~~~~~~~~~~~~~~~~~tGDl~~~~~~g~~~~~  411 (513)
T PRK07656        335 VAGTIGTAIAGVENKIVN-ELGEE--VPVGEVGELLVRGPNVMKGYYDDPEATAAAIDADGWLHTGDLGRLDEEGYLYIV  411 (513)
T ss_pred             cCCCccccCCCcEEEEEC-CCCCC--CCCCCceEEEEEcchhhhhhcCCHHHHhhhhccCCceeccceEEEcCCeeEEEE
Confidence             58999999999999999 66654  44567999999999999999999999888884 999999999999999999999


Q ss_pred             eccCCeeEcCCCeeecchhHHHHHhcCcCcceEEEEecCCC---CeEEEEEEcChhhHHHHHHHCCCCCcHHHHhccHHH
Q 006111          513 DRKKNLIKISQGEYVALEYLENVYCVAPIIEDIWVYGDSLK---SMLVAVVVPCEEDTKKWAYSNGHAGSFLELCSLVQL  589 (660)
Q Consensus       513 GR~~d~i~~~~G~~v~~~~iE~~l~~~p~V~~~~V~~~~~~---~~~~a~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  589 (660)
                      ||.+|+|++ +|.+++|.+||+.|.++++|.+++|++.++.   +.++++|+.+.+.        ..        .    
T Consensus       412 GR~~d~i~~-~G~~v~~~~iE~~l~~~~~i~~~~v~~~~~~~~g~~~~~~v~~~~~~--------~~--------~----  470 (513)
T PRK07656        412 DRKKDMFIV-GGFNVYPAEVEEVLYEHPAVAEAAVIGVPDERLGEVGKAYVVLKPGA--------EL--------T----  470 (513)
T ss_pred             ecccceEEe-CCEEeCHHHHHHHHHhCCCeeEEEEEecCCcccCceEEEEEEECCCC--------CC--------C----
Confidence            999999997 8999999999999999999999999986644   4778888876422        00        1    


Q ss_pred             HHHHHHHHHHHHHhCCCCCceeeeEEEEecCCCCCCCCccccccccchHHHHH
Q 006111          590 QNYILSELKNAAERNKLRGFEHIKGVILDPRPFDMERDLVTATLKKKRNKLLI  642 (660)
Q Consensus       590 ~~~~~~~l~~~~~~~~l~~~~~p~~i~~~~~~~~~~~~P~t~~GKv~R~~l~~  642 (660)
                          .+++.++++ ..||.+.+|..+.+++      .+|+|++||++|++|++
T Consensus       471 ----~~~l~~~~~-~~l~~~~~p~~i~~v~------~iP~t~~gK~~r~~l~~  512 (513)
T PRK07656        471 ----EEELIAYCR-EHLAKYKVPRSIEFLD------ELPKNATGKVLKRALRE  512 (513)
T ss_pred             ----HHHHHHHHH-hhcccccCCCEEEEec------CCCCCCccceeHHHHhc
Confidence                123444443 6799999999999874      46899999999999875

>PRK05852 acyl-CoA synthetase; Validated

Probab=100.00  E-value=5.9e-63  Score=545.95  Aligned_cols=507  Identities=23%  Similarity=0.282  Sum_probs=395.5

Q ss_pred             CCCCCcHHHHHHHHHHhCCCCCceeeeccccCCCCCceEEeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEeCCchhHHHH
Q 006111           38 DSDLNTAWDIFSMSVQKYPGNRMLGWRPFVDGKFGPYVWKTYKEVYEEVLQIVSALRASGAEPGCRVGIYGANCPQWVEA  117 (660)
Q Consensus        38 ~~~~~ti~~~l~~~a~~~pd~~a~~~~~~~d~~~~~~~~~Ty~ql~~~v~~lA~~L~~~Gl~~gd~V~l~~~n~~e~~~~  117 (660)
                      -+.-.++.++|+++++++|+++|+++.   ++.    +.+||.||.++++++|++|.+.|+++||+|+++++|+++++++
T Consensus        12 ~~~~~~l~~~l~~~a~~~p~~~ai~~~---~~~----~~~Ty~~l~~~~~~~a~~L~~~gv~~gd~V~i~~~n~~~~~~~   84 (534)
T PRK05852         12 SDFGPRIADLVEVAATRLPEAPALVVT---ADR----IAISYRDLARLVDDLAGQLTRSGLLPGDRVALRMGSNAEFVVA   84 (534)
T ss_pred             hhhcccHHHHHHHHHHhCCCCcEEEec---CCC----CcccHHHHHHHHHHHHHHHHhcCCCCCCEEEEECCCcHHHHHH
Confidence            344578999999999999999999875   331    4799999999999999999999999999999999999999999


Q ss_pred             HHHHHhCCCeEEecCCCCChhHHHHHHhcccceEEEEccchhhhhhccccccccCccEEEEecCCcHHHHHHHhhCCcce
Q 006111          118 MEACNALSLICVPLYDTLGPGAVNFILDHAEIDFVFVQDKKVKELLSPDCRSAQRLRVMVCFTSLTAEQKEMAVQTGIKP  197 (660)
Q Consensus       118 ~lA~~~~G~~~vpl~~~~~~~~l~~~l~~~~~~~ii~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~  197 (660)
                      +|||+++|++++|+++.++.+++..+|+.++++++|++............   ......+.+......      ......
T Consensus        85 ~lA~~~~G~~~v~l~~~~~~~~l~~~l~~~~~~~ii~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~------~~~~~~  155 (534)
T PRK05852         85 LLAASRADLVVVPLDPALPIAEQRVRSQAAGARVVLIDADGPHDRAEPTT---RWWPLTVNVGGDSGP------SGGTLS  155 (534)
T ss_pred             HHHHHHcCcEEeecCCCCCcHHHHHHHHhCCCCEEEEcCCCcchhccccc---cccceeeeecccccc------cccccc
Confidence            99999999999999999999999999999999999998753321111000   001111111110000      000000


Q ss_pred             eeHHHHHhcCccCCccCCCCCCCceEEEEecCCCCCCCceeeecchhHHHHhhhhhhhcccccCCCCCCcEEEEecChhH
Q 006111          198 YSWDEFLHLGKVNEMEILPPQPFNICTIMYTSGTSGDPKGVVLTHETIATFVSGVDLFLDQFEDKMTVDDVYLSFLPLAH  277 (660)
Q Consensus       198 ~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~TSGTTG~pK~v~~th~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~pl~~  277 (660)
                      ..+......  ...........++.++++|||||||.||+|.++|+++...+......+     ++..+|++++.+|++|
T Consensus       156 ~~~~~~~~~--~~~~~~~~~~~~~~a~il~TSGTTG~PKgv~~~~~~~~~~~~~~~~~~-----~~~~~d~~~~~~p~~~  228 (534)
T PRK05852        156 VHLDAATEP--TPATSTPEGLRPDDAMIMFTGGTTGLPKMVPWTHANIASSVRAIITGY-----RLSPRDATVAVMPLYH  228 (534)
T ss_pred             cccccccCC--CccccccCCCCCCceEEEeCCCCCCCCcEEEecHHHHHHHHHHHHHHh-----CCCCcceEEEecCcch
Confidence            000000000  000111122357889999999999999999999999998888777666     7889999999999999


Q ss_pred             HHHHHH-HHHHhhcCcEEEEecC---ChhhHHHHhhhhcCeEEEechHHHHHHHHHHHHHHHhhchHHHHHHHHHHHHHH
Q 006111          278 ILDRVI-EEYFFRRGASVGYYHG---DLNALRDDLMELKPTLLAGVPRVFEKIHEGIKKALEELRPLRRRIFDALYKYKL  353 (660)
Q Consensus       278 ~~g~~~-~l~~l~~G~~~v~~~~---~~~~~~~~i~~~~~t~~~~~p~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~  353 (660)
                      .+++.. ++.+++.|+++++...   ++..+++.|+++++|+++++|.++..|.+.......                  
T Consensus       229 ~~g~~~~~~~~l~~g~~~~~~~~~~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~------------------  290 (534)
T PRK05852        229 GHGLIAALLATLASGGAVLLPARGRFSAHTFWDDIKAVGATWYTAVPTIHQILLERAATEPS------------------  290 (534)
T ss_pred             hHHHHHHHHHHHhcCCeEEeCCCcCcCHHHHHHHHHHcCCcEEEcChHHHHHHHhhcccccc------------------
Confidence            999876 5667888998887542   788999999999999999999999988654221100                  


Q ss_pred             HHHhhCCCCCCcchhhhHHHHHHHHHHhCCcEeEEEEccCCCCHHHHHHHHHhcCCceeeecCCCCCCCceecccCC---
Q 006111          354 AWMNMGYKQREASPLADLLAFRKVKARLGGRLRLVISGGAPLSTEVEEFLRVTCCAFLVQGYGLTETCGPTTVCFPD---  430 (660)
Q Consensus       354 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lr~i~~~G~~l~~~~~~~~~~~~~~~v~~~YG~tE~~~~~~~~~~~---  430 (660)
                                               ....+++|.++++|+++++.+.+.+.+.++.++++.||+||++..++.....   
T Consensus       291 -------------------------~~~~~~lr~i~~~G~~~~~~~~~~~~~~~~~~v~~~YG~tE~~~~~~~~~~~~~~  345 (534)
T PRK05852        291 -------------------------GRKPAALRFIRSCSAPLTAETAQALQTEFAAPVVCAFGMTEATHQVTTTQIEGIG  345 (534)
T ss_pred             -------------------------cccCCCeeEEEECCCCCCHHHHHHHHHHhCCChhhccCccccchhhhcCCccccc
Confidence                                     0011489999999999999999999999999999999999999776654321   


Q ss_pred             ----CccccCccCCCccCeeEEeeecCCCCCCCCCCCCCceEEEccCCcccccCCCchhhhhcccCCccccCceEEECCC
Q 006111          431 ----EMCMVGTAGPVSVYSELRLEEVPEMGYSPLDDPPCGEVCVRGKTLFSGYYKNPDLTRESIIDGWFHTGDIGQILPN  506 (660)
Q Consensus       431 ----~~~~~~~~G~~~~~~~v~ivd~~~~~~~~~~~~~~Gei~v~g~~~~~gy~~~~~~~~~~~~~g~~~TGDl~~~~~~  506 (660)
                          .....+..|+ .++++++++| +++..  ++.++.|||+|+|+.++.||+++++.+.+.|.+|||+|||+|++|+|
T Consensus       346 ~~~~~~~~~g~~g~-~~g~~~~i~d-~~g~~--~~~g~~Gel~v~g~~v~~gY~~~~~~t~~~~~~g~~~TGD~~~~d~d  421 (534)
T PRK05852        346 QTENPVVSTGLVGR-STGAQIRIVG-SDGLP--LPAGAVGEVWLRGTTVVRGYLGDPTITAANFTDGWLRTGDLGSLSAA  421 (534)
T ss_pred             cccCcccccccCCC-CCCCeEEEEC-CCCCC--CCCCCceEEEEecCcccchhcCCcccchhhhcCCCcccCceEEEeCC
Confidence                1112234444 6999999999 77654  45568999999999999999999999999999999999999999999


Q ss_pred             CcEEEEeccCCeeEcCCCeeecchhHHHHHhcCcCcceEEEEecCCC---CeEEEEEEcChhhHHHHHHHCCCCCcHHHH
Q 006111          507 GVVKIIDRKKNLIKISQGEYVALEYLENVYCVAPIIEDIWVYGDSLK---SMLVAVVVPCEEDTKKWAYSNGHAGSFLEL  583 (660)
Q Consensus       507 G~l~~~GR~~d~i~~~~G~~v~~~~iE~~l~~~p~V~~~~V~~~~~~---~~~~a~v~~~~~~~~~~~~~~~~~~~~~~~  583 (660)
                      |++++.||.+|+|+. +|.+|+|.+||++|.+||+|.+|+|++.++.   +.++++|++.+...        .       
T Consensus       422 G~l~~~gR~~d~i~~-~G~~v~~~~iE~~l~~~~~V~~~~v~g~~~~~~g~~~~~~vv~~~~~~--------~-------  485 (534)
T PRK05852        422 GDLSIRGRIKELINR-GGEKISPERVEGVLASHPNVMEAAVFGVPDQLYGEAVAAVIVPRESAP--------P-------  485 (534)
T ss_pred             CcEEEEecchhhEEE-CCEEECHHHHHHHHHhCCCeeeEEEEecCCcCcCceEEEEEEECCCCC--------C-------
Confidence            999999999999996 8999999999999999999999999998764   46888888755320        0       


Q ss_pred             hccHHHHHHHHHHHHHHHHhCCCCCceeeeEEEEecCCCCCCCCccccccccchHHHHHHHHH
Q 006111          584 CSLVQLQNYILSELKNAAERNKLRGFEHIKGVILDPRPFDMERDLVTATLKKKRNKLLIYYQV  646 (660)
Q Consensus       584 ~~~~~~~~~~~~~l~~~~~~~~l~~~~~p~~i~~~~~~~~~~~~P~t~~GKv~R~~l~~~~~~  646 (660)
                       .        .++|.++++ .+||.|++|+.+.+++      .+|+|++||++|++|+++|..
T Consensus       486 -~--------~~~i~~~~~-~~l~~~~~P~~i~~v~------~iP~t~~GKi~r~~L~~~~~~  532 (534)
T PRK05852        486 -T--------AEELVQFCR-ERLAAFEIPASFQEAS------GLPHTAKGSLDRRAVAEQFGH  532 (534)
T ss_pred             -C--------HHHHHHHHH-HhcccccCCeEEEEhh------hcCCCCCccccHHHHHHHhcc
Confidence             1        123444444 6789999999999874      458999999999999998854

>PRK07638 acyl-CoA synthetase; Validated

Probab=100.00  E-value=2e-62  Score=535.76  Aligned_cols=476  Identities=19%  Similarity=0.198  Sum_probs=390.7

Q ss_pred             CcHHHHHHHHHHhCCCCCceeeeccccCCCCCceEEeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEeCCchhHHHHHHHH
Q 006111           42 NTAWDIFSMSVQKYPGNRMLGWRPFVDGKFGPYVWKTYKEVYEEVLQIVSALRASGAEPGCRVGIYGANCPQWVEAMEAC  121 (660)
Q Consensus        42 ~ti~~~l~~~a~~~pd~~a~~~~~~~d~~~~~~~~~Ty~ql~~~v~~lA~~L~~~Gl~~gd~V~l~~~n~~e~~~~~lA~  121 (660)
                      +++.+.|+++++++||++|+.+.   +      .++||.||.+++.++|..|.+.|. +||+|+|+++|++++++++|||
T Consensus         1 ~~~~~~~~~~a~~~p~~~a~~~~---~------~~~Ty~~l~~~~~~~a~~L~~~~~-~~~~v~i~~~~~~~~~~~~la~   70 (487)
T PRK07638          1 MGITKEYKKHASLQPNKIAIKEN---D------RVLTYKDWFESVCKVANWLNEKES-KNKTIAILLENRIEFLQLFAGA   70 (487)
T ss_pred             CChHHHHHHHHHhCCCCeEEecC---C------cEeeHHHHHHHHHHHHHHHHHhCC-CCCEEEEEcCCCHHHHHHHHHH
Confidence            36889999999999999999865   3      489999999999999999999884 8999999999999999999999


Q ss_pred             HhCCCeEEecCCCCChhHHHHHHhcccceEEEEccchhhhhhccccccccCccEEEEecCCcHHHHHHHhhCCcceeeHH
Q 006111          122 NALSLICVPLYDTLGPGAVNFILDHAEIDFVFVQDKKVKELLSPDCRSAQRLRVMVCFTSLTAEQKEMAVQTGIKPYSWD  201 (660)
Q Consensus       122 ~~~G~~~vpl~~~~~~~~l~~~l~~~~~~~ii~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~  201 (660)
                      +++|++++|+++.++.+++..+++.++++++|++......+...      . ..++..+.                  +.
T Consensus        71 ~~~G~~~v~l~~~~~~~~~~~~~~~~~~~~vi~~~~~~~~~~~~------~-~~~~~~~~------------------~~  125 (487)
T PRK07638         71 AMAGWTCVPLDIKWKQDELKERLAISNADMIVTERYKLNDLPDE------E-GRVIEIDE------------------WK  125 (487)
T ss_pred             HHcCeEEEecCccCCHHHHHHHHHhCCCCEEEEecccccchhhc------c-ceEEEehh------------------hh
Confidence            99999999999999999999999999999999988654433210      0 11222221                  11


Q ss_pred             HHHhcCccCCccCCCCCCCceEEEEecCCCCCCCceeeecchhHHHHhhhhhhhcccccCCCCCCcEEEEecChhHHHHH
Q 006111          202 EFLHLGKVNEMEILPPQPFNICTIMYTSGTSGDPKGVVLTHETIATFVSGVDLFLDQFEDKMTVDDVYLSFLPLAHILDR  281 (660)
Q Consensus       202 ~~~~~~~~~~~~~~~~~~~~~~~i~~TSGTTG~pK~v~~th~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~pl~~~~g~  281 (660)
                      +..... ...........+++++|+|||||||.||+|+++|+++...+......+     ++..+|+++...|++|..++
T Consensus       126 ~~~~~~-~~~~~~~~~~~~~~a~i~~TSGtTG~PKgv~~s~~~~~~~~~~~~~~~-----~~~~~d~~~~~~~l~~~~~l  199 (487)
T PRK07638        126 RMIEKY-LPTYAPIENVQNAPFYMGFTSGSTGKPKAFLRAQQSWLHSFDCNVHDF-----HMKREDSVLIAGTLVHSLFL  199 (487)
T ss_pred             hhhhhc-cccccccccCCCCcEEEEeCCCCCCCCcEEEEecHHHHHHHHHHHHhc-----CcCCCCEEEEeecchHHHHH
Confidence            111111 011111122356789999999999999999999999988887766655     78899999999999998887


Q ss_pred             HHHHHHhhcCcEEEEecC-ChhhHHHHhhhhcCeEEEechHHHHHHHHHHHHHHHhhchHHHHHHHHHHHHHHHHHhhCC
Q 006111          282 VIEEYFFRRGASVGYYHG-DLNALRDDLMELKPTLLAGVPRVFEKIHEGIKKALEELRPLRRRIFDALYKYKLAWMNMGY  360 (660)
Q Consensus       282 ~~~l~~l~~G~~~v~~~~-~~~~~~~~i~~~~~t~~~~~p~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  360 (660)
                      ...+.+++.|+++++.+. ++..+++.|+++++|+++++|+++..+.+...                             
T Consensus       200 ~~~~~~l~~g~~~~~~~~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~-----------------------------  250 (487)
T PRK07638        200 YGAISTLYVGQTVHLMRKFIPNQVLDKLETENISVMYTVPTMLESLYKENR-----------------------------  250 (487)
T ss_pred             HHHHHHHccCcEEEEcCCCCHHHHHHHHHHcCCeEEEeCcHHHHHHHhCcC-----------------------------
Confidence            777888999999998876 89999999999999999999999998865300                             


Q ss_pred             CCCCcchhhhHHHHHHHHHHhCCcEeEEEEccCCCCHHHHHHHHHhc-CCceeeecCCCCCCCceecccCCCccccCccC
Q 006111          361 KQREASPLADLLAFRKVKARLGGRLRLVISGGAPLSTEVEEFLRVTC-CAFLVQGYGLTETCGPTTVCFPDEMCMVGTAG  439 (660)
Q Consensus       361 ~~~~~~~~~~~~~~~~~~~~~~~~lr~i~~~G~~l~~~~~~~~~~~~-~~~v~~~YG~tE~~~~~~~~~~~~~~~~~~~G  439 (660)
                                          ...+.+.++++|+.++.++.+++.+.+ ++.+++.||+||++.++............++|
T Consensus       251 --------------------~~~~~~~~~~~G~~l~~~~~~~~~~~~~~~~~~~~YG~tE~~~~~~~~~~~~~~~~~~~G  310 (487)
T PRK07638        251 --------------------VIENKMKIISSGAKWEAEAKEKIKNIFPYAKLYEFYGASELSFVTALVDEESERRPNSVG  310 (487)
T ss_pred             --------------------cCCceeEEEEcCCCCCHHHHHHHHHHcCCCeEEEEecCCccCceEEecccccCCCCCCCC
Confidence                                002556678899999999999999988 78899999999999877665543344557999


Q ss_pred             CCccCeeEEeeecCCCCCCCCCCCCCceEEEccCCcccccCCCchhhhhcccCCccccCceEEECCCCcEEEEeccCCee
Q 006111          440 PVSVYSELRLEEVPEMGYSPLDDPPCGEVCVRGKTLFSGYYKNPDLTRESIIDGWFHTGDIGQILPNGVVKIIDRKKNLI  519 (660)
Q Consensus       440 ~~~~~~~v~ivd~~~~~~~~~~~~~~Gei~v~g~~~~~gy~~~~~~~~~~~~~g~~~TGDl~~~~~~G~l~~~GR~~d~i  519 (660)
                      .|+++++++|+| +++..  ++.|+.|||+|+|+.++.||++++..+...+.+|||+|||+|++|++|++++.||.+|+|
T Consensus       311 ~~~~~~~~~i~d-~~g~~--~~~g~~Gel~v~~~~~~~gy~~~~~~~~~~~~~g~~~TGDl~~~d~~g~l~i~GR~~d~i  387 (487)
T PRK07638        311 RPFHNVQVRICN-EAGEE--VQKGEIGTVYVKSPQFFMGYIIGGVLARELNADGWMTVRDVGYEDEEGFIYIVGREKNMI  387 (487)
T ss_pred             cccCCcEEEEEC-CCCCC--CCCCCCeEEEEecccceeeecCCHHHHhhhccCCcEecCccEeEcCCCeEEEEecCCCeE
Confidence            999999999999 66654  456689999999999999999999888877789999999999999999999999999999


Q ss_pred             EcCCCeeecchhHHHHHhcCcCcceEEEEecCCC---CeEEEEEEcChhhHHHHHHHCCCCCcHHHHhccHHHHHHHHHH
Q 006111          520 KISQGEYVALEYLENVYCVAPIIEDIWVYGDSLK---SMLVAVVVPCEEDTKKWAYSNGHAGSFLELCSLVQLQNYILSE  596 (660)
Q Consensus       520 ~~~~G~~v~~~~iE~~l~~~p~V~~~~V~~~~~~---~~~~a~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  596 (660)
                      ++ +|.+|+|.+||++|.+||+|.+|+|++.+++   +.++++|+...                    .        .++
T Consensus       388 ~~-~G~~v~~~eiE~~l~~~~~v~~~~v~~~~~~~~g~~~~~~v~~~~--------------------~--------~~~  438 (487)
T PRK07638        388 LF-GGINIFPEEIESVLHEHPAVDEIVVIGVPDSYWGEKPVAIIKGSA--------------------T--------KQQ  438 (487)
T ss_pred             Ee-CCEEECHHHHHHHHHhCCCeeeEEEEecCchhcCCeeEEEEECCC--------------------C--------HHH
Confidence            97 8999999999999999999999999998765   46777776422                    1        122


Q ss_pred             HHHHHHhCCCCCceeeeEEEEecCCCCCCCCccccccccchHHHHHHHHH
Q 006111          597 LKNAAERNKLRGFEHIKGVILDPRPFDMERDLVTATLKKKRNKLLIYYQV  646 (660)
Q Consensus       597 l~~~~~~~~l~~~~~p~~i~~~~~~~~~~~~P~t~~GKv~R~~l~~~~~~  646 (660)
                      ++++++ ..++.|++|..+++++      .+|+|++||++|++|++++++
T Consensus       439 l~~~~~-~~l~~~~~p~~i~~v~------~iP~t~~GKv~r~~L~~~~~~  481 (487)
T PRK07638        439 LKSFCL-QRLSSFKIPKEWHFVD------EIPYTNSGKIARMEAKSWIEN  481 (487)
T ss_pred             HHHHHH-HHhhcccCCcEEEEec------ccCCCCcccccHHHHHHHHhc
Confidence            333333 5678999999999874      458999999999999877654

>PRK06155 crotonobetaine/carnitine-CoA ligase; Provisional

Probab=100.00  E-value=3e-62  Score=540.15  Aligned_cols=501  Identities=21%  Similarity=0.225  Sum_probs=403.4

Q ss_pred             CCCCCCCcHHHHHHHHHHhCCCCCceeeeccccCCCCCceEEeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEeCCchhHH
Q 006111           36 SVDSDLNTAWDIFSMSVQKYPGNRMLGWRPFVDGKFGPYVWKTYKEVYEEVLQIVSALRASGAEPGCRVGIYGANCPQWV  115 (660)
Q Consensus        36 ~~~~~~~ti~~~l~~~a~~~pd~~a~~~~~~~d~~~~~~~~~Ty~ql~~~v~~lA~~L~~~Gl~~gd~V~l~~~n~~e~~  115 (660)
                      ..|...+++.++|+++++++||++|+++.   +      .++||.||.+++.++|..|.+.|+++|++|+++++|+++++
T Consensus        15 ~~~~~~~~l~~~l~~~a~~~p~~~a~~~~---~------~~~Ty~el~~~v~~la~~L~~~gi~~g~~V~v~~~n~~~~~   85 (542)
T PRK06155         15 PLPPSERTLPAMLARQAERYPDRPLLVFG---G------TRWTYAEAARAAAAAAHALAAAGVKRGDRVALMCGNRIEFL   85 (542)
T ss_pred             cCCccccCHHHHHHHHHHHCCCCeEEEeC---C------ccccHHHHHHHHHHHHHHHHHcCCCCCCEEEEECCCChHHH
Confidence            34556788999999999999999999865   3      47999999999999999999999999999999999999999


Q ss_pred             HHHHHHHhCCCeEEecCCCCChhHHHHHHhcccceEEEEccchhhhhhccccccccCccEEEEecCCcHHHHHHHhhCCc
Q 006111          116 EAMEACNALSLICVPLYDTLGPGAVNFILDHAEIDFVFVQDKKVKELLSPDCRSAQRLRVMVCFTSLTAEQKEMAVQTGI  195 (660)
Q Consensus       116 ~~~lA~~~~G~~~vpl~~~~~~~~l~~~l~~~~~~~ii~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~  195 (660)
                      +++|||+++|++++|+++.++.+++..+++.+++++++++.+....+..... .......++.++.....         .
T Consensus        86 ~~~lA~~~~G~~~vpl~~~~~~~~l~~~l~~~~~~~l~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~---------~  155 (542)
T PRK06155         86 DVFLGCAWLGAIAVPINTALRGPQLEHILRNSGARLLVVEAALLAALEAADP-GDLPLPAVWLLDAPASV---------S  155 (542)
T ss_pred             HHHHHHHHhCCEEEEeccccCHHHHHHHHHhcCceEEEEChhhHHHHHHhcc-cccCcceEEEecCcccc---------c
Confidence            9999999999999999999999999999999999999999877665533221 11223445555432110         0


Q ss_pred             ceeeHHHHHhcCccCCccCCCCCCCceEEEEecCCCCCCCceeeecchhHHHHhhhhhhhcccccCCCCCCcEEEEecCh
Q 006111          196 KPYSWDEFLHLGKVNEMEILPPQPFNICTIMYTSGTSGDPKGVVLTHETIATFVSGVDLFLDQFEDKMTVDDVYLSFLPL  275 (660)
Q Consensus       196 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~TSGTTG~pK~v~~th~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~pl  275 (660)
                      ....|..................++++++++|||||||.||+|.++|.++..........+     ++..++++++.+|+
T Consensus       156 ~~~~~~~~~~~~~~~~~~~~~~~~~~~a~il~TSGTTG~PK~V~~t~~~~~~~~~~~~~~~-----~~~~~~~~l~~~pl  230 (542)
T PRK06155        156 VPAGWSTAPLPPLDAPAPAAAVQPGDTAAILYTSGTTGPSKGVCCPHAQFYWWGRNSAEDL-----EIGADDVLYTTLPL  230 (542)
T ss_pred             cccccchhhhcccCCCCCCCCCCCCCeEEEEECCCCCCCCcEEEEEHHHHHHHHHHHHHhc-----CCCCCCEEEEecCH
Confidence            0001111100000111122344678999999999999999999999999988777666555     78899999999999


Q ss_pred             hHHHHHHHHHHHhhcCcEEEEecC-ChhhHHHHhhhhcCeEEEechHHHHHHHHHHHHHHHhhchHHHHHHHHHHHHHHH
Q 006111          276 AHILDRVIEEYFFRRGASVGYYHG-DLNALRDDLMELKPTLLAGVPRVFEKIHEGIKKALEELRPLRRRIFDALYKYKLA  354 (660)
Q Consensus       276 ~~~~g~~~~l~~l~~G~~~v~~~~-~~~~~~~~i~~~~~t~~~~~p~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~  354 (660)
                      +|..++...+.+++.|+++++.+. ++..++..|+++++|+++++|+++..|.+......                    
T Consensus       231 ~~~~~~~~~~~~l~~G~~~~~~~~~~~~~~~~~l~~~~~t~~~~~p~~~~~l~~~~~~~~--------------------  290 (542)
T PRK06155        231 FHTNALNAFFQALLAGATYVLEPRFSASGFWPAVRRHGATVTYLLGAMVSILLSQPARES--------------------  290 (542)
T ss_pred             HHHHHHHHHHHHHHcCceEEeeCCCCHHHHHHHHHHhCCcEEEchHHHHHHHHcCcCccc--------------------
Confidence            999998878888999999988876 89999999999999999999999887764311100                    


Q ss_pred             HHhhCCCCCCcchhhhHHHHHHHHHHhCCcEeEEEEccCCCCHHHHHHHHHhcCCceeeecCCCCCCCceecccCCCccc
Q 006111          355 WMNMGYKQREASPLADLLAFRKVKARLGGRLRLVISGGAPLSTEVEEFLRVTCCAFLVQGYGLTETCGPTTVCFPDEMCM  434 (660)
Q Consensus       355 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lr~i~~~G~~l~~~~~~~~~~~~~~~v~~~YG~tE~~~~~~~~~~~~~~~  434 (660)
                                               ...+++|.++.+|  +++.+.+.+++.+++++++.||+||++..+.....  ...
T Consensus       291 -------------------------~~~~~l~~~~~g~--~~~~~~~~~~~~~~~~v~~~YG~tE~~~~~~~~~~--~~~  341 (542)
T PRK06155        291 -------------------------DRAHRVRVALGPG--VPAALHAAFRERFGVDLLDGYGSTETNFVIAVTHG--SQR  341 (542)
T ss_pred             -------------------------cccCceEEEEEcC--CCHHHHHHHHHHcCCCEEeeecccccCccccCCCC--CCC
Confidence                                     0114788877665  57889999999899999999999999987665432  234


Q ss_pred             cCccCCCccCeeEEeeecCCCCCCCCCCCCCceEEEccC---CcccccCCCchhhhhcccCCccccCceEEECCCCcEEE
Q 006111          435 VGTAGPVSVYSELRLEEVPEMGYSPLDDPPCGEVCVRGK---TLFSGYYKNPDLTRESIIDGWFHTGDIGQILPNGVVKI  511 (660)
Q Consensus       435 ~~~~G~~~~~~~v~ivd~~~~~~~~~~~~~~Gei~v~g~---~~~~gy~~~~~~~~~~~~~g~~~TGDl~~~~~~G~l~~  511 (660)
                      .+++|.++++++++|+| +++..  ++.|+.|||+++|+   +++.||+++++.+...|.++||+|||+|+++++|.+++
T Consensus       342 ~~~vG~~~~~~~~~i~d-~~~~~--~~~g~~Gei~v~~~~~~~~~~GY~~~~~~~~~~~~~~~~~TGD~~~~~~dG~l~i  418 (542)
T PRK06155        342 PGSMGRLAPGFEARVVD-EHDQE--LPDGEPGELLLRADEPFAFATGYFGMPEKTVEAWRNLWFHTGDRVVRDADGWFRF  418 (542)
T ss_pred             CCCcCccCCCceEEEEC-CCCCC--CCCCCceEEEEecCCccccchhhcCCHHHHHHhhcCCcEeccceEEEcCCceEEE
Confidence            47899999999999998 66554  44557999999998   68999999999999889999999999999999999999


Q ss_pred             EeccCCeeEcCCCeeecchhHHHHHhcCcCcceEEEEecCCC---CeEEEEEEcChhhHHHHHHHCCCCCcHHHHhccHH
Q 006111          512 IDRKKNLIKISQGEYVALEYLENVYCVAPIIEDIWVYGDSLK---SMLVAVVVPCEEDTKKWAYSNGHAGSFLELCSLVQ  588 (660)
Q Consensus       512 ~GR~~d~i~~~~G~~v~~~~iE~~l~~~p~V~~~~V~~~~~~---~~~~a~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~  588 (660)
                      .||.+|+|++ +|.+|+|.+||++|.+||+|.+|+|++.+++   +.+.+++++..+..          .      +   
T Consensus       419 ~GR~~d~i~~-~G~~v~p~eIE~~l~~~~~V~~~~v~~v~~~~~~~~~~~~v~~~~~~~----------~------~---  478 (542)
T PRK06155        419 VDRIKDAIRR-RGENISSFEVEQVLLSHPAVAAAAVFPVPSELGEDEVMAAVVLRDGTA----------L------E---  478 (542)
T ss_pred             EecCCCEEEe-CCEEECHHHHHHHHHhCCCeeEEEEEeecccccCceEEEEEEECCCCC----------C------C---
Confidence            9999999996 8999999999999999999999999987754   46777887765420          0      1   


Q ss_pred             HHHHHHHHHHHHHHhCCCCCceeeeEEEEecCCCCCCCCccccccccchHHHHHHH
Q 006111          589 LQNYILSELKNAAERNKLRGFEHIKGVILDPRPFDMERDLVTATLKKKRNKLLIYY  644 (660)
Q Consensus       589 ~~~~~~~~l~~~~~~~~l~~~~~p~~i~~~~~~~~~~~~P~t~~GKv~R~~l~~~~  644 (660)
                           ..+++++++ .+|+.|++|..|.+++      .+|+|++||++|++|++++
T Consensus       479 -----~~~~~~~~~-~~l~~~~~P~~i~~~~------~iP~t~~GKi~r~~l~~~~  522 (542)
T PRK06155        479 -----PVALVRHCE-PRLAYFAVPRYVEFVA------ALPKTENGKVQKFVLREQG  522 (542)
T ss_pred             -----HHHHHHHHH-hhCcCccCCcEEEEec------cCCCCcccceeHHHHHhhc
Confidence                 123444444 6789999999999874      4689999999999999876

>PRK07008 long-chain-fatty-acid--CoA ligase; Validated

Probab=100.00  E-value=3.9e-62  Score=539.50  Aligned_cols=509  Identities=21%  Similarity=0.277  Sum_probs=403.6

Q ss_pred             CCCcHHHHHHHHHHhCCCCCceeeeccccCCCCCceEEeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEeCCchhHHHHHH
Q 006111           40 DLNTAWDIFSMSVQKYPGNRMLGWRPFVDGKFGPYVWKTYKEVYEEVLQIVSALRASGAEPGCRVGIYGANCPQWVEAME  119 (660)
Q Consensus        40 ~~~ti~~~l~~~a~~~pd~~a~~~~~~~d~~~~~~~~~Ty~ql~~~v~~lA~~L~~~Gl~~gd~V~l~~~n~~e~~~~~l  119 (660)
                      ...++.++|++.++++|+.+++.+.     ..+.++.+||.||.++++++|.+|.+.|+++||+|+++++|+++++++++
T Consensus         8 ~~~~~~~~l~~~~~~~~~~~~~~~~-----~~~~~~~~Ty~el~~~~~~~a~~L~~~g~~~~d~v~i~~~~~~~~~~~~l   82 (539)
T PRK07008          8 MPLLISSLIAHAARHAGDTEIVSRR-----VEGDIHRYTYRDCERRAKQLAQALAALGVEPGDRVGTLAWNGYRHLEAYY   82 (539)
T ss_pred             CCCCHHHHHHHHHhhCCCceEEEee-----ccCcceEeeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEcCCcHHHHHHHH
Confidence            3467999999999999998887653     12235689999999999999999999999999999999999999999999


Q ss_pred             HHHhCCCeEEecCCCCChhHHHHHHhcccceEEEEccchhhhhhccccccccCccEEEEecCCcHHHHHHHhhCCcceee
Q 006111          120 ACNALSLICVPLYDTLGPGAVNFILDHAEIDFVFVQDKKVKELLSPDCRSAQRLRVMVCFTSLTAEQKEMAVQTGIKPYS  199 (660)
Q Consensus       120 A~~~~G~~~vpl~~~~~~~~l~~~l~~~~~~~ii~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~  199 (660)
                      ||+++|++++|+++.++.+++..+++.+++++++++.+....+.+.. .....+..++...+....     ........+
T Consensus        83 a~~~~G~~~v~l~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~-----~~~~~~~~~  156 (539)
T PRK07008         83 GVSGSGAVCHTINPRLFPEQIAYIVNHAEDRYVLFDLTFLPLVDALA-PQCPNVKGWVAMTDAAHL-----PAGSTPLLC  156 (539)
T ss_pred             HHHhcCcEEeecccccCHHHHHHHHhccCCcEEEEcchhHHHHHHHH-hhCCCceEEEEEccCCcc-----ccCCccccc
Confidence            99999999999999999999999999999999999987665443221 122334444444332110     001122445


Q ss_pred             HHHHHhcCccCCccCCCCCCCceEEEEecCCCCCCCceeeecchhHHHHhh--hhhhhcccccCCCCCCcEEEEecChhH
Q 006111          200 WDEFLHLGKVNEMEILPPQPFNICTIMYTSGTSGDPKGVVLTHETIATFVS--GVDLFLDQFEDKMTVDDVYLSFLPLAH  277 (660)
Q Consensus       200 ~~~~~~~~~~~~~~~~~~~~~~~~~i~~TSGTTG~pK~v~~th~~l~~~~~--~~~~~~~~~~~~~~~~~~~l~~~pl~~  277 (660)
                      ++++...... ........++++++++|||||||.||+|++||++++....  .+...+     ++..+|+++..+|++|
T Consensus       157 ~~~l~~~~~~-~~~~~~~~~~~~~~i~~TSGTTG~PK~v~~s~~~~~~~~~~~~~~~~~-----~~~~~d~~l~~~p~~h  230 (539)
T PRK07008        157 YETLVGAQDG-DYDWPRFDENQASSLCYTSGTTGNPKGALYSHRSTVLHAYGAALPDAM-----GLSARDAVLPVVPMFH  230 (539)
T ss_pred             HHHHhcccCC-CcCcccCCcccceEEEECCCCCCCCcEEEEecHHHHHHHHHhhccccc-----CCCCCceEEecCchHH
Confidence            6666543321 1122345678999999999999999999999999864322  222233     6778999999999999


Q ss_pred             HHHHHHHHHHhhcCcEEEEecC--ChhhHHHHhhhhcCeEEEechHHHHHHHHHHHHHHHhhchHHHHHHHHHHHHHHHH
Q 006111          278 ILDRVIEEYFFRRGASVGYYHG--DLNALRDDLMELKPTLLAGVPRVFEKIHEGIKKALEELRPLRRRIFDALYKYKLAW  355 (660)
Q Consensus       278 ~~g~~~~l~~l~~G~~~v~~~~--~~~~~~~~i~~~~~t~~~~~p~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  355 (660)
                      ..++...+.++..|+++++.+.  ++..+++.++++++|++.++|+++..+++.....                      
T Consensus       231 ~~~~~~~~~~l~~G~~~~~~~~~~~~~~~~~~l~~~~vt~~~~~P~~~~~l~~~~~~~----------------------  288 (539)
T PRK07008        231 VNAWGLPYSAPLTGAKLVLPGPDLDGKSLYELIEAERVTFSAGVPTVWLGLLNHMREA----------------------  288 (539)
T ss_pred             hhhHHHHHHHHhcCceEEEecCCcCHHHHHHHHHHcCCEEEEechHHHHHHHhccccc----------------------
Confidence            8887777778899999998754  8899999999999999999999999887532211                      


Q ss_pred             HhhCCCCCCcchhhhHHHHHHHHHHhCCcEeEEEEccCCCCHHHHHHHHHhcCCceeeecCCCCCCCceecccCCC----
Q 006111          356 MNMGYKQREASPLADLLAFRKVKARLGGRLRLVISGGAPLSTEVEEFLRVTCCAFLVQGYGLTETCGPTTVCFPDE----  431 (660)
Q Consensus       356 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lr~i~~~G~~l~~~~~~~~~~~~~~~v~~~YG~tE~~~~~~~~~~~~----  431 (660)
                                     ..++        +++|.++++|+++++.+.+.+.+.++.++++.||+||++..++.+....    
T Consensus       289 ---------------~~~~--------~~l~~~~~~G~~l~~~~~~~~~~~~~~~l~~~YG~tE~~~~~~~~~~~~~~~~  345 (539)
T PRK07008        289 ---------------GLRF--------STLRRTVIGGSACPPAMIRTFEDEYGVEVIHAWGMTEMSPLGTLCKLKWKHSQ  345 (539)
T ss_pred             ---------------CCCc--------ccceEEEEcCCCCCHHHHHHHHHHhCCceecccccccccccceeccccccccc
Confidence                           0011        4899999999999999999999989999999999999997655432110    


Q ss_pred             ------ccccCccCCCccCeeEEeeecCCCCCCCCCCCCCceEEEccCCcccccCCCchhhhhcccCCccccCceEEECC
Q 006111          432 ------MCMVGTAGPVSVYSELRLEEVPEMGYSPLDDPPCGEVCVRGKTLFSGYYKNPDLTRESIIDGWFHTGDIGQILP  505 (660)
Q Consensus       432 ------~~~~~~~G~~~~~~~v~ivd~~~~~~~~~~~~~~Gei~v~g~~~~~gy~~~~~~~~~~~~~g~~~TGDl~~~~~  505 (660)
                            .....++|.|+++++++|+| +++..++.+.++.|||+++|+.++.||++++.   ..+.+|||+|||+|++|+
T Consensus       346 ~~~~~~~~~~~~~G~p~pg~~~~i~d-~~~~~~~~~~~~~Gei~v~g~~~~~gy~~~~~---~~~~~g~~~TGD~~~~~~  421 (539)
T PRK07008        346 LPLDEQRKLLEKQGRVIYGVDMKIVG-DDGRELPWDGKAFGDLQVRGPWVIDRYFRGDA---SPLVDGWFPTGDVATIDA  421 (539)
T ss_pred             CCchhhhhhcccCCccccceEEEEEC-CCCCccCCCCCcceEEEEeCCccchhhcCChh---hhhcCCCcccCceEEEcC
Confidence                  11236789999999999999 77766665555689999999999999999873   345689999999999999


Q ss_pred             CCcEEEEeccCCeeEcCCCeeecchhHHHHHhcCcCcceEEEEecCCC---CeEEEEEEcChhhHHHHHHHCCCCCcHHH
Q 006111          506 NGVVKIIDRKKNLIKISQGEYVALEYLENVYCVAPIIEDIWVYGDSLK---SMLVAVVVPCEEDTKKWAYSNGHAGSFLE  582 (660)
Q Consensus       506 ~G~l~~~GR~~d~i~~~~G~~v~~~~iE~~l~~~p~V~~~~V~~~~~~---~~~~a~v~~~~~~~~~~~~~~~~~~~~~~  582 (660)
                      ||.+++.||.+|+|+. +|.+|+|.+||+++..||.|.+++|++.++.   +.++++|+..++..        .      
T Consensus       422 dg~l~~~GR~~d~i~~-~G~~v~p~eIE~~l~~~p~v~~~~v~~~~~~~~~~~~~~~v~~~~~~~--------~------  486 (539)
T PRK07008        422 DGFMQITDRSKDVIKS-GGEWISSIDIENVAVAHPAVAEAACIACAHPKWDERPLLVVVKRPGAE--------V------  486 (539)
T ss_pred             CCcEEEeecccCEEEe-CCeEEcHHHHHHHHHhCCceeEEEEEecCCchhccceEEEEEeCCCCc--------c------
Confidence            9999999999999996 8999999999999999999999999997754   46778877765420        0      


Q ss_pred             HhccHHHHHHHHHHHHHHHHhCCCCCceeeeEEEEecCCCCCCCCccccccccchHHHHHHHHH
Q 006111          583 LCSLVQLQNYILSELKNAAERNKLRGFEHIKGVILDPRPFDMERDLVTATLKKKRNKLLIYYQV  646 (660)
Q Consensus       583 ~~~~~~~~~~~~~~l~~~~~~~~l~~~~~p~~i~~~~~~~~~~~~P~t~~GKv~R~~l~~~~~~  646 (660)
                        .        .+++.++++ .++++|++|+.|.++      +.+|+|++||++|++|++++++
T Consensus       487 --~--------~~~l~~~~~-~~l~~~~~P~~i~~v------~~lP~t~sgKi~r~~l~~~~~~  533 (539)
T PRK07008        487 --T--------REELLAFYE-GKVAKWWIPDDVVFV------DAIPHTATGKLQKLKLREQFRD  533 (539)
T ss_pred             --C--------HHHHHHHHH-hhcccccCCeEEEEe------cCCCCCCccceeHHHHHHHHHh
Confidence              1        234555554 678999999999987      4468999999999999988865

>PLN03102 acyl-activating enzyme; Provisional

Probab=100.00  E-value=4.1e-62  Score=542.66  Aligned_cols=522  Identities=21%  Similarity=0.249  Sum_probs=391.6

Q ss_pred             CcHHHHHHHHHHhCCCCCceeeeccccCCCCCceEEeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEeCCchhHHHHHHHH
Q 006111           42 NTAWDIFSMSVQKYPGNRMLGWRPFVDGKFGPYVWKTYKEVYEEVLQIVSALRASGAEPGCRVGIYGANCPQWVEAMEAC  121 (660)
Q Consensus        42 ~ti~~~l~~~a~~~pd~~a~~~~~~~d~~~~~~~~~Ty~ql~~~v~~lA~~L~~~Gl~~gd~V~l~~~n~~e~~~~~lA~  121 (660)
                      .|+.+.|...++++|+++|+.+.   +      .++||+||.++++++|++|.+.|+++||+|+|+++|++++++++|||
T Consensus        14 ~~~~~~l~~~~~~~p~~~Al~~~---~------~~~Ty~eL~~~~~~~a~~L~~~Gl~~gd~Vai~~~n~~e~~~~~la~   84 (579)
T PLN03102         14 LTPITFLKRASECYPNRTSIIYG---K------TRFTWPQTYDRCCRLAASLISLNITKNDVVSVLAPNTPAMYEMHFAV   84 (579)
T ss_pred             ccHHHHHHHHHHhCCCCeEEEEC---C------cEEEHHHHHHHHHHHHHHHHHcCCCCCCEEEEEcCCcHHHHHHHHHH
Confidence            57899999999999999999875   3      47999999999999999999999999999999999999999999999


Q ss_pred             HhCCCeEEecCCCCChhHHHHHHhcccceEEEEccchhhhhhcccccccc-----CccEEEEecCCcHHHHHHHhhCCcc
Q 006111          122 NALSLICVPLYDTLGPGAVNFILDHAEIDFVFVQDKKVKELLSPDCRSAQ-----RLRVMVCFTSLTAEQKEMAVQTGIK  196 (660)
Q Consensus       122 ~~~G~~~vpl~~~~~~~~l~~~l~~~~~~~ii~~~~~~~~~~~~~~~~~~-----~~~~i~~~~~~~~~~~~~~~~~~~~  196 (660)
                      +++|++++|+++.++.+++.++|+.++++++|++.+....+.+.... ..     ....++.++......     .....
T Consensus        85 ~~~G~~~vpl~~~~~~~~l~~~l~~~~~~~ii~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~-----~~~~~  158 (579)
T PLN03102         85 PMAGAVLNPINTRLDATSIAAILRHAKPKILFVDRSFEPLAREVLHL-LSSEDSNLNLPVIFIHEIDFPK-----RPSSE  158 (579)
T ss_pred             HhcCcEEeeccccCCHHHHHHHHhccCCeEEEEChhhHHHHHHHHhh-ccccccccCceEEEeccccccc-----CCccc
Confidence            99999999999999999999999999999999988766544322111 00     011233333211000     00011


Q ss_pred             eeeHHHHHhcCccCCcc----CCCCCCCceEEEEecCCCCCCCceeeecchhHHHHhhhhhhhcccccCCCCCCcEEEEe
Q 006111          197 PYSWDEFLHLGKVNEME----ILPPQPFNICTIMYTSGTSGDPKGVVLTHETIATFVSGVDLFLDQFEDKMTVDDVYLSF  272 (660)
Q Consensus       197 ~~~~~~~~~~~~~~~~~----~~~~~~~~~~~i~~TSGTTG~pK~v~~th~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~  272 (660)
                      ..++.++..........    .....++++++|+|||||||.||+|+++|+++...........     .+...++++..
T Consensus       159 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~il~TSGTTG~PK~v~~s~~~~~~~~~~~~~~~-----~~~~~~~~l~~  233 (579)
T PLN03102        159 ELDYECLIQRGEPTPSLVARMFRIQDEHDPISLNYTSGTTADPKGVVISHRGAYLSTLSAIIGW-----EMGTCPVYLWT  233 (579)
T ss_pred             ccCHHHHHhccCCCCcccccccccCCCCCcEEEEeCCcCCCCCCEEEEecHHHHHHHHHHHhhc-----CCCCCCeEEec
Confidence            23455554432211111    1134578999999999999999999999999754433322222     45667889999


Q ss_pred             cChhHHHHHHHHHHHhhcCcEEEEecC-ChhhHHHHhhhhcCeEEEechHHHHHHHHHHHHHHHhhchHHHHHHHHHHHH
Q 006111          273 LPLAHILDRVIEEYFFRRGASVGYYHG-DLNALRDDLMELKPTLLAGVPRVFEKIHEGIKKALEELRPLRRRIFDALYKY  351 (660)
Q Consensus       273 ~pl~~~~g~~~~l~~l~~G~~~v~~~~-~~~~~~~~i~~~~~t~~~~~p~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~  351 (660)
                      +|++|..++...+.++..|+++++.+. ++..+++.|+++++|+++++|+++..|.+......                 
T Consensus       234 ~pl~h~~g~~~~~~~~~~g~~~v~~~~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~-----------------  296 (579)
T PLN03102        234 LPMFHCNGWTFTWGTAARGGTSVCMRHVTAPEIYKNIEMHNVTHMCCVPTVFNILLKGNSLDL-----------------  296 (579)
T ss_pred             CChhhhcchhHHHHHHHhcCcEEeeccCChHHHHHHHHHcCCeEEEeChHHHHHHHhCccccc-----------------
Confidence            999999988777778888988887765 88899999999999999999999998865311000                 


Q ss_pred             HHHHHhhCCCCCCcchhhhHHHHHHHHHHhCCcEeEEEEccCCCCHHHHHHHHHhcCCceeeecCCCCCCCceecccCCC
Q 006111          352 KLAWMNMGYKQREASPLADLLAFRKVKARLGGRLRLVISGGAPLSTEVEEFLRVTCCAFLVQGYGLTETCGPTTVCFPDE  431 (660)
Q Consensus       352 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lr~i~~~G~~l~~~~~~~~~~~~~~~v~~~YG~tE~~~~~~~~~~~~  431 (660)
                                          .        ..++++.+++||+++++.+.+++++ +|+++++.||+||+++.++......
T Consensus       297 --------------------~--------~~~~~~~~~~gg~~~~~~~~~~~~~-~g~~i~~~YG~tE~~~~~~~~~~~~  347 (579)
T PLN03102        297 --------------------S--------PRSGPVHVLTGGSPPPAALVKKVQR-LGFQVMHAYGLTEATGPVLFCEWQD  347 (579)
T ss_pred             --------------------C--------CcccceEEEECCCCCCHHHHHHHHH-cCCeEEeecCccccCcccccccccc
Confidence                                0        0026788999999999999998876 5999999999999986544321100


Q ss_pred             -------------ccccCccCCCccCeeEEeeecCCCCCCCCCCCCCceEEEccCCcccccCCCchhhhhcccCCccccC
Q 006111          432 -------------MCMVGTAGPVSVYSELRLEEVPEMGYSPLDDPPCGEVCVRGKTLFSGYYKNPDLTRESIIDGWFHTG  498 (660)
Q Consensus       432 -------------~~~~~~~G~~~~~~~v~ivd~~~~~~~~~~~~~~Gei~v~g~~~~~gy~~~~~~~~~~~~~g~~~TG  498 (660)
                                   ....+..+.++++  +.+++.+.+..++.+.++.|||+|+|+.++.||+++++.+.+.|.+|||+||
T Consensus       348 ~~~~~~~~~~~~~~~~~g~~~~~~~~--v~i~~~~~~~~v~~~~~~~GEl~v~g~~~~~GY~~~~~~t~~~f~~gw~~TG  425 (579)
T PLN03102        348 EWNRLPENQQMELKARQGVSILGLAD--VDVKNKETQESVPRDGKTMGEIVIKGSSIMKGYLKNPKATSEAFKHGWLNTG  425 (579)
T ss_pred             ccccCCcccccccccCCCcccccccc--eEEeccccccccCCCCCCceEEEEECcchhhhhcCChhhhHhhhccCceecC
Confidence                         0112333344444  4455522333333333467999999999999999999999999999999999


Q ss_pred             ceEEECCCCcEEEEeccCCeeEcCCCeeecchhHHHHHhcCcCcceEEEEecCCC---CeEEEEEEcChhhHHHHHHHCC
Q 006111          499 DIGQILPNGVVKIIDRKKNLIKISQGEYVALEYLENVYCVAPIIEDIWVYGDSLK---SMLVAVVVPCEEDTKKWAYSNG  575 (660)
Q Consensus       499 Dl~~~~~~G~l~~~GR~~d~i~~~~G~~v~~~~iE~~l~~~p~V~~~~V~~~~~~---~~~~a~v~~~~~~~~~~~~~~~  575 (660)
                      |+|++|+||++++.||.+|+|+. +|++|+|.+||+.|.+||.|.+|+|++.+++   +.++|+|++.++....      
T Consensus       426 Dlg~~d~dG~l~i~GR~~d~i~~-~G~~v~p~eIE~~l~~~p~V~~a~vv~~~~~~~~~~~~a~v~~~~~~~~~------  498 (579)
T PLN03102        426 DVGVIHPDGHVEIKDRSKDIIIS-GGENISSVEVENVLYKYPKVLETAVVAMPHPTWGETPCAFVVLEKGETTK------  498 (579)
T ss_pred             ceEEEcCCCeEEEEeccCcEEEE-CCEEECHHHHHHHHHhCCCcceeEEEeccCccccceeEEEEEecCccccc------
Confidence            99999999999999999999996 8999999999999999999999999998765   4899999887653110      


Q ss_pred             CCCcHHHHhccHHHHHHHHHHHHHHHHhCCCCCceeeeEEEEecCCCCCCCCccccccccchHHHHHHHHH-HHHHHHh
Q 006111          576 HAGSFLELCSLVQLQNYILSELKNAAERNKLRGFEHIKGVILDPRPFDMERDLVTATLKKKRNKLLIYYQV-EIDQLYE  653 (660)
Q Consensus       576 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~l~~~~~p~~i~~~~~~~~~~~~P~t~~GKv~R~~l~~~~~~-~i~~~y~  653 (660)
                       ...+.+...       -..+++++++ ..||+|++|..+++++      .+|+|++||++|++|++++++ ..++-|.
T Consensus       499 -~~~~~~~~~-------~~~~l~~~~~-~~L~~~~~P~~i~~~~------~~P~t~~gKi~r~~L~~~~~~~~~~~~~~  562 (579)
T PLN03102        499 -EDRVDKLVT-------RERDLIEYCR-ENLPHFMCPRKVVFLQ------ELPKNGNGKILKPKLRDIAKGLVVEDEDN  562 (579)
T ss_pred             -ccccccccc-------cHHHHHHHHH-hhcccccCCeEEEEcc------cCCCCCcccccHHHHHHHHHHhhhHHHHH
Confidence             000000000       0234555554 6799999999999874      458999999999999999866 4444444

>PRK06187 long-chain-fatty-acid--CoA ligase; Validated

Probab=100.00  E-value=4.1e-62  Score=538.82  Aligned_cols=507  Identities=28%  Similarity=0.350  Sum_probs=421.2

Q ss_pred             CCCcHHHHHHHHHHhCCCCCceeeeccccCCCCCceEEeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEeCCchhHHHHHH
Q 006111           40 DLNTAWDIFSMSVQKYPGNRMLGWRPFVDGKFGPYVWKTYKEVYEEVLQIVSALRASGAEPGCRVGIYGANCPQWVEAME  119 (660)
Q Consensus        40 ~~~ti~~~l~~~a~~~pd~~a~~~~~~~d~~~~~~~~~Ty~ql~~~v~~lA~~L~~~Gl~~gd~V~l~~~n~~e~~~~~l  119 (660)
                      ...++.++|.++++.+|+++|+.+.   +      +.+||+||+++++++|+.|.+.|+++|++|+++++|++++++++|
T Consensus         4 ~~~~l~~~l~~~~~~~p~~~a~~~~---~------~~~Ty~~l~~~~~~~a~~L~~~g~~~~~~V~l~~~~~~~~~~~~l   74 (521)
T PRK06187          4 YPLTIGRILRHGARKHPDKEAVYFD---G------RRTTYAELDERVNRLANALRALGVKKGDRVAVFDWNSHEYLEAYF   74 (521)
T ss_pred             ccCCHHHHHHHHHHHCCCceEEEeC---C------ceEcHHHHHHHHHHHHHHHHHcCCCCCCEEEEECCCCHHHHHHHH
Confidence            4578999999999999999999876   4      359999999999999999999999999999999999999999999


Q ss_pred             HHHhCCCeEEecCCCCChhHHHHHHhcccceEEEEccchhhhhhccccccccCccEEEEecCCcHHHHHHHhhCCcceee
Q 006111          120 ACNALSLICVPLYDTLGPGAVNFILDHAEIDFVFVQDKKVKELLSPDCRSAQRLRVMVCFTSLTAEQKEMAVQTGIKPYS  199 (660)
Q Consensus       120 A~~~~G~~~vpl~~~~~~~~l~~~l~~~~~~~ii~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~  199 (660)
                      ||+++|++++|+++.++.+++..+++.+++++++++......+.+.. ........++..++....      ........
T Consensus        75 a~~~~G~~~v~~~~~~~~~~~~~~i~~~~~~~i~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~------~~~~~~~~  147 (521)
T PRK06187         75 AVPKIGAVLHPINIRLKPEEIAYILNDAEDRVVLVDSEFVPLLAAIL-PQLPTVRTVIVEGDGPAA------PLAPEVGE  147 (521)
T ss_pred             HHHHcCeEEEecccCCCHHHHHHHHHhcCCeEEEEcchHHHHHHHHh-hccCCccEEEEecCcccc------cccccccc
Confidence            99999999999999999999999999999999999988766553322 223344455555443210      11122345


Q ss_pred             HHHHHhcCccCCccCCCCCCCceEEEEecCCCCCCCceeeecchhHHHHhhhhhhhcccccCCCCCCcEEEEecChhHHH
Q 006111          200 WDEFLHLGKVNEMEILPPQPFNICTIMYTSGTSGDPKGVVLTHETIATFVSGVDLFLDQFEDKMTVDDVYLSFLPLAHIL  279 (660)
Q Consensus       200 ~~~~~~~~~~~~~~~~~~~~~~~~~i~~TSGTTG~pK~v~~th~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~pl~~~~  279 (660)
                      +.++...... ........++++++++|||||||.||+|.+||.++...+......+     ++..++++++.+|++|.+
T Consensus       148 ~~~~~~~~~~-~~~~~~~~~~~~~~i~~TSGtTG~PK~v~~t~~~l~~~~~~~~~~~-----~~~~~d~~~~~~~~~~~~  221 (521)
T PRK06187        148 YEELLAAASD-TFDFPDIDENDAAAMLYTSGTTGHPKGVVLSHRNLFLHSLAVCAWL-----KLSRDDVYLVIVPMFHVH  221 (521)
T ss_pred             HHHHhhcCCc-cCCCCCCCccceEEEEECCCCCCCCceEEeehHHHHHHHHHHHHhh-----CCCCCCEEEEeCCchHHh
Confidence            5555544321 2223345678999999999999999999999999998888877666     889999999999999999


Q ss_pred             HHHHHHHHhhcCcEEEEecC-ChhhHHHHhhhhcCeEEEechHHHHHHHHHHHHHHHhhchHHHHHHHHHHHHHHHHHhh
Q 006111          280 DRVIEEYFFRRGASVGYYHG-DLNALRDDLMELKPTLLAGVPRVFEKIHEGIKKALEELRPLRRRIFDALYKYKLAWMNM  358 (660)
Q Consensus       280 g~~~~l~~l~~G~~~v~~~~-~~~~~~~~i~~~~~t~~~~~p~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  358 (660)
                      ++...+.++..|+++++.+. ++..+++.++++++|.++++|++++.+.+.....                         
T Consensus       222 ~~~~~~~~l~~G~~~v~~~~~~~~~~~~~l~~~~~t~l~~~p~~~~~l~~~~~~~-------------------------  276 (521)
T PRK06187        222 AWGLPYLALMAGAKQVIPRRFDPENLLDLIETERVTFFFAVPTIWQMLLKAPRAY-------------------------  276 (521)
T ss_pred             hHHHHHHHHHhCCEEEecCCCCHHHHHHHHHHhCCeEEEchHHHHHHHHcCcCCC-------------------------
Confidence            98887779999999999876 8999999999999999999999999886543210                         


Q ss_pred             CCCCCCcchhhhHHHHHHHHHHhCCcEeEEEEccCCCCHHHHHHHHHhcCCceeeecCCCCCCCceecccCCCc-----c
Q 006111          359 GYKQREASPLADLLAFRKVKARLGGRLRLVISGGAPLSTEVEEFLRVTCCAFLVQGYGLTETCGPTTVCFPDEM-----C  433 (660)
Q Consensus       359 ~~~~~~~~~~~~~~~~~~~~~~~~~~lr~i~~~G~~l~~~~~~~~~~~~~~~v~~~YG~tE~~~~~~~~~~~~~-----~  433 (660)
                                  ..+        .+++|.+++||+++++++.+.+.+.+++++++.||+||++.++........     .
T Consensus       277 ------------~~~--------~~~l~~v~~~Ge~l~~~~~~~~~~~~~~~v~~~YG~tE~~~~~~~~~~~~~~~~~~~  336 (521)
T PRK06187        277 ------------FVD--------FSSLRLVIYGGAALPPALLREFKEKFGIDLVQGYGMTETSPVVSVLPPEDQLPGQWT  336 (521)
T ss_pred             ------------ccC--------cchhhEEEEcCcCCCHHHHHHHHHHhCcchheeeccCccCcccccCCcccccccccc
Confidence                        011        148999999999999999999999889999999999999987766554333     2


Q ss_pred             ccCccCCCccCeeEEeeecCCCCCCCCCCCCCceEEEccCCcccccCCCchhhhhcccCCccccCceEEECCCCcEEEEe
Q 006111          434 MVGTAGPVSVYSELRLEEVPEMGYSPLDDPPCGEVCVRGKTLFSGYYKNPDLTRESIIDGWFHTGDIGQILPNGVVKIID  513 (660)
Q Consensus       434 ~~~~~G~~~~~~~v~ivd~~~~~~~~~~~~~~Gei~v~g~~~~~gy~~~~~~~~~~~~~g~~~TGDl~~~~~~G~l~~~G  513 (660)
                      ..+++|.|++++.++|+| +++..++.+.++.|||+++|+.++.||+++++.+.+.|.+|||+|||+++++++|.+++.|
T Consensus       337 ~~~~~G~~~~~~~~~i~~-~~~~~~~~~~g~~Gel~v~~~~~~~~y~~~~~~~~~~~~~~~~~tGD~~~~~~~g~~~~~G  415 (521)
T PRK06187        337 KRRSAGRPLPGVEARIVD-DDGDELPPDGGEVGEIIVRGPWLMQGYWNRPEATAETIDGGWLHTGDVGYIDEDGYLYITD  415 (521)
T ss_pred             cCCccccccCCeEEEEEC-CCCCCCCCCCCCeeEEEEECcchhhhhcCCHHHHHHHhhCCceeccceEEEcCCCCEEEee
Confidence            558999999999999999 7777565544789999999999999999999999999999999999999999999999999


Q ss_pred             ccCCeeEcCCCeeecchhHHHHHhcCcCcceEEEEecCCC---CeEEEEEEcChhhHHHHHHHCCCCCcHHHHhccHHHH
Q 006111          514 RKKNLIKISQGEYVALEYLENVYCVAPIIEDIWVYGDSLK---SMLVAVVVPCEEDTKKWAYSNGHAGSFLELCSLVQLQ  590 (660)
Q Consensus       514 R~~d~i~~~~G~~v~~~~iE~~l~~~p~V~~~~V~~~~~~---~~~~a~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  590 (660)
                      |.+|+|++ +|.+++|.+||+.|.++++|.+|+|++.++.   +.+++++++.++..          .      +     
T Consensus       416 R~~~~i~~-~G~~v~~~~IE~~l~~~~~v~~~~v~~~~~~~~~~~~~~~v~~~~~~~----------~------~-----  473 (521)
T PRK06187        416 RIKDVIIS-GGENIYPRELEDALYGHPAVAEVAVIGVPDEKWGERPVAVVVLKPGAT----------L------D-----  473 (521)
T ss_pred             cccceEEc-CCeEECHHHHHHHHHhCCCceEEEEEeccCCCcCceEEEEEEECCCCC----------C------C-----
Confidence            99999997 8999999999999999999999999986543   48888888776420          0      1     


Q ss_pred             HHHHHHHHHHHHhCCCCCceeeeEEEEecCCCCCCCCccccccccchHHHHHHHHH
Q 006111          591 NYILSELKNAAERNKLRGFEHIKGVILDPRPFDMERDLVTATLKKKRNKLLIYYQV  646 (660)
Q Consensus       591 ~~~~~~l~~~~~~~~l~~~~~p~~i~~~~~~~~~~~~P~t~~GKv~R~~l~~~~~~  646 (660)
                         .+.++++++ ..+++|.+|..+++++      .+|+|++||++|++|+++|++
T Consensus       474 ---~~~l~~~l~-~~l~~~~~p~~i~~v~------~~P~t~~gK~~r~~l~~~~~~  519 (521)
T PRK06187        474 ---AKELRAFLR-GRLAKFKLPKRIAFVD------ELPRTSVGKILKRVLREQYAE  519 (521)
T ss_pred             ---HHHHHHHHH-HhccCCCCceEEEEcc------CCCCCCCCCeeHHHHHHHHhc
Confidence               122333333 6789999999999874      468999999999999999864

>PRK08008 caiC putative crotonobetaine/carnitine-CoA ligase; Validated

Probab=100.00  E-value=2.8e-62  Score=538.95  Aligned_cols=503  Identities=23%  Similarity=0.272  Sum_probs=401.0

Q ss_pred             CCcHHHHHHHHHHhCCCCCceeeeccccCCCCCceEEeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEeCCchhHHHHHHH
Q 006111           41 LNTAWDIFSMSVQKYPGNRMLGWRPFVDGKFGPYVWKTYKEVYEEVLQIVSALRASGAEPGCRVGIYGANCPQWVEAMEA  120 (660)
Q Consensus        41 ~~ti~~~l~~~a~~~pd~~a~~~~~~~d~~~~~~~~~Ty~ql~~~v~~lA~~L~~~Gl~~gd~V~l~~~n~~e~~~~~lA  120 (660)
                      .+++.++|+++++++|+++|+.+.   + ..++++++||.||.++++++|..|.+.|+++||+|+++++|++++++++||
T Consensus         6 ~~~l~~~~~~~a~~~p~~~a~~~~---~-~~~~~~~~ty~~l~~~v~~la~~L~~~g~~~~~~v~i~~~n~~~~~~~~la   81 (517)
T PRK08008          6 GQHLRQMWDDLADVYGHKTALIFE---S-SGGVVRRYSYLELNEEINRTANLFYSLGIRKGDKVALHLDNCPEFIFCWFG   81 (517)
T ss_pred             cccHHHHHHHHHHHCCCceEEEcc---c-CCCccceeeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEcCCCHHHHHHHHH
Confidence            478999999999999999999886   4 234567899999999999999999999999999999999999999999999


Q ss_pred             HHhCCCeEEecCCCCChhHHHHHHhcccceEEEEccchhhhhhccccccccCccEEEEecCCcHHHHHHHhhCCcceeeH
Q 006111          121 CNALSLICVPLYDTLGPGAVNFILDHAEIDFVFVQDKKVKELLSPDCRSAQRLRVMVCFTSLTAEQKEMAVQTGIKPYSW  200 (660)
Q Consensus       121 ~~~~G~~~vpl~~~~~~~~l~~~l~~~~~~~ii~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~  200 (660)
                      |+++|++++|+++..+.+++..+++.++++++|++......+.+...........++..+....        ......++
T Consensus        82 ~~~~G~~~v~l~~~~~~~~l~~~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--------~~~~~~~~  153 (517)
T PRK08008         82 LAKIGAIMVPINARLLREESAWILQNSQASLLVTSAQFYPMYRQIQQEDATPLRHICLTRVALP--------ADDGVSSF  153 (517)
T ss_pred             HHHcCeEEEEcCcccCHHHHHHHHHhcCceEEEEecchhHHHHHHHhhccccCcEEEEecCCCc--------ccccccCH
Confidence            9999999999999999999999999999999999987765544332222233444554443211        00112344


Q ss_pred             HHHHhcCccCCccCCCCCCCceEEEEecCCCCCCCceeeecchhHHHHhhhhhhhcccccCCCCCCcEEEEecChhHHHH
Q 006111          201 DEFLHLGKVNEMEILPPQPFNICTIMYTSGTSGDPKGVVLTHETIATFVSGVDLFLDQFEDKMTVDDVYLSFLPLAHILD  280 (660)
Q Consensus       201 ~~~~~~~~~~~~~~~~~~~~~~~~i~~TSGTTG~pK~v~~th~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~pl~~~~g  280 (660)
                      .++............+..++++++++|||||||.||+|.+||.++...........     .+..++++++.+|++|..+
T Consensus       154 ~~~~~~~~~~~~~~~~~~~~~~a~i~~TSGtTG~PK~v~~t~~~l~~~~~~~~~~~-----~~~~~~~~~~~~p~~~~~~  228 (517)
T PRK08008        154 TQLKAQQPATLCYAPPLSTDDTAEILFTSGTTSRPKGVVITHYNLRFAGYYSAWQC-----ALRDDDVYLTVMPAFHIDC  228 (517)
T ss_pred             HHHhccCCccccccCCCCCCCeEEEEECCCCCCCCcEEEEehHHHHHHHHHHhhhc-----CCCCCCeEEEecCcHHHHH
Confidence            44433322111222345678999999999999999999999999986543322222     5678899999999999877


Q ss_pred             HHH-HHHHhhcCcEEEEecC-ChhhHHHHhhhhcCeEEEechHHHHHHHHHHHHHHHhhchHHHHHHHHHHHHHHHHHhh
Q 006111          281 RVI-EEYFFRRGASVGYYHG-DLNALRDDLMELKPTLLAGVPRVFEKIHEGIKKALEELRPLRRRIFDALYKYKLAWMNM  358 (660)
Q Consensus       281 ~~~-~l~~l~~G~~~v~~~~-~~~~~~~~i~~~~~t~~~~~p~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  358 (660)
                      ... ++.+++.|+++++.+. ++..+++.++++++|++.++|.+++.+........                        
T Consensus       229 ~~~~~~~~l~~G~~~~~~~~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~------------------------  284 (517)
T PRK08008        229 QCTAAMAAFSAGATFVLLEKYSARAFWGQVCKYRATITECIPMMIRTLMVQPPSAN------------------------  284 (517)
T ss_pred             HHHHHHHHHhcCcEEEEccccCHHHHHHHHHHcCCcEEechHHHHHHHHhCCCccc------------------------
Confidence            665 6677889999999876 89999999999999999999999988753211000                        


Q ss_pred             CCCCCCcchhhhHHHHHHHHHHhCCcEeEEEEccCCCCHHHHHHHHHhcCCceeeecCCCCCCCceecccCCCccccCcc
Q 006111          359 GYKQREASPLADLLAFRKVKARLGGRLRLVISGGAPLSTEVEEFLRVTCCAFLVQGYGLTETCGPTTVCFPDEMCMVGTA  438 (660)
Q Consensus       359 ~~~~~~~~~~~~~~~~~~~~~~~~~~lr~i~~~G~~l~~~~~~~~~~~~~~~v~~~YG~tE~~~~~~~~~~~~~~~~~~~  438 (660)
                                .           ...+++.+.++ ..+++.....+.+.+++++++.||+||++..+...........+++
T Consensus       285 ----------~-----------~~~~l~~~~~~-~~~~~~~~~~~~~~~~~~~~~~YG~tE~~~~~~~~~~~~~~~~~~~  342 (517)
T PRK08008        285 ----------D-----------RQHCLREVMFY-LNLSDQEKDAFEERFGVRLLTSYGMTETIVGIIGDRPGDKRRWPSI  342 (517)
T ss_pred             ----------c-----------ccccceeeEEe-cCCCHHHHHHHHHHhCCeEEeeccccccccccccCCccccccCCcc
Confidence                      0           00267777665 4788999999988899999999999999876665544444455789


Q ss_pred             CCCccCeeEEeeecCCCCCCCCCCCCCceEEEcc---CCcccccCCCchhhhhcc-cCCccccCceEEECCCCcEEEEec
Q 006111          439 GPVSVYSELRLEEVPEMGYSPLDDPPCGEVCVRG---KTLFSGYYKNPDLTRESI-IDGWFHTGDIGQILPNGVVKIIDR  514 (660)
Q Consensus       439 G~~~~~~~v~ivd~~~~~~~~~~~~~~Gei~v~g---~~~~~gy~~~~~~~~~~~-~~g~~~TGDl~~~~~~G~l~~~GR  514 (660)
                      |.|+++++++++| +++.  +++.|+.||||++|   ++++.||+++++.+.+.| .+|||+|||+|++|++|.+++.||
T Consensus       343 G~~~~g~~~~i~d-~~~~--~~~~g~~Gel~v~g~~~~~~~~gy~~~~~~~~~~~~~~g~~~TGDl~~~~~~g~~~~~GR  419 (517)
T PRK08008        343 GRPGFCYEAEIRD-DHNR--PLPAGEIGEICIKGVPGKTIFKEYYLDPKATAKVLEADGWLHTGDTGYVDEEGFFYFVDR  419 (517)
T ss_pred             ccCCCCcEEEEEC-CCCC--CCCCCCcceEEEeCCCCcchhhhHhCChHHHhhcccCCCCeeccceEEECCCCcEEEeec
Confidence            9999999999999 6665  44456799999998   689999999999999988 689999999999999999999999


Q ss_pred             cCCeeEcCCCeeecchhHHHHHhcCcCcceEEEEecCCC---CeEEEEEEcChhhHHHHHHHCCCCCcHHHHhccHHHHH
Q 006111          515 KKNLIKISQGEYVALEYLENVYCVAPIIEDIWVYGDSLK---SMLVAVVVPCEEDTKKWAYSNGHAGSFLELCSLVQLQN  591 (660)
Q Consensus       515 ~~d~i~~~~G~~v~~~~iE~~l~~~p~V~~~~V~~~~~~---~~~~a~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  591 (660)
                      .+|+|++ +|++|+|.+||++|.+||.|.+|+|++.++.   +.+.++|+++.+..        .        .      
T Consensus       420 ~~d~i~~-~G~~i~p~~iE~~l~~~~~v~~~~v~g~~~~~~~~~~~~~v~~~~~~~--------~--------~------  476 (517)
T PRK08008        420 RCNMIKR-GGENVSCVELENIIATHPKIQDIVVVGIKDSIRDEAIKAFVVLNEGET--------L--------S------  476 (517)
T ss_pred             ccceEEe-CCEEECHHHHHHHHHhCCceeeEEEEccCCCCCCceEEEEEEECCCCC--------C--------C------
Confidence            9999996 7999999999999999999999999997754   47889999876420        0        1      


Q ss_pred             HHHHHHHHHHHhCCCCCceeeeEEEEecCCCCCCCCccccccccchHHHH
Q 006111          592 YILSELKNAAERNKLRGFEHIKGVILDPRPFDMERDLVTATLKKKRNKLL  641 (660)
Q Consensus       592 ~~~~~l~~~~~~~~l~~~~~p~~i~~~~~~~~~~~~P~t~~GKv~R~~l~  641 (660)
                        .+++.++++ .++++|++|..+.++      +.+|+|++||++|+.|+
T Consensus       477 --~~~l~~~~~-~~l~~~~~P~~~~~v------~~iP~t~~gK~~r~~l~  517 (517)
T PRK08008        477 --EEEFFAFCE-QNMAKFKVPSYLEIR------KDLPRNCSGKIIKKNLK  517 (517)
T ss_pred             --HHHHHHHHH-hhcccccCCcEEEEe------ccCCCCCccceehhhcC
Confidence              123444444 678999999998887      44689999999999874

>PRK06060 acyl-CoA synthetase; Validated

Probab=100.00  E-value=1.6e-62  Score=558.60  Aligned_cols=477  Identities=21%  Similarity=0.198  Sum_probs=385.8

Q ss_pred             CcHHHHHHHHHHh--CCCCCceeeeccccCCCCCceEEeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEeCCchhHHHHHH
Q 006111           42 NTAWDIFSMSVQK--YPGNRMLGWRPFVDGKFGPYVWKTYKEVYEEVLQIVSALRASGAEPGCRVGIYGANCPQWVEAME  119 (660)
Q Consensus        42 ~ti~~~l~~~a~~--~pd~~a~~~~~~~d~~~~~~~~~Ty~ql~~~v~~lA~~L~~~Gl~~gd~V~l~~~n~~e~~~~~l  119 (660)
                      .|+.+.|...+.+  +||++|++..          ..+||+||+++++++|++|.+.|+++||+|+++++|++++++++|
T Consensus         4 ~~~~~~~~~~a~~~~~pd~~a~~~~----------~~~Ty~eL~~~~~~lA~~L~~~g~~~g~~V~i~~~~~~~~~~~~l   73 (705)
T PRK06060          4 GNLAGLLAEQASEAGWYDRPAFYAA----------DVVTHGQIHDGAARLGEVLRNRGLSSGDRVLLCLPDSPDLVQLLL   73 (705)
T ss_pred             cCHHHHHHHHHhhccCCCceEEEec----------CceeHHHHHHHHHHHHHHHHHcCCCCCCEEEEECCCCHHHHHHHH
Confidence            4788999988886  7999999743          259999999999999999999999999999999999999999999


Q ss_pred             HHHhCCCeEEecCCCCChhHHHHHHhcccceEEEEccchhhhhhccccccccCccEEEEecCCcHHHHHHHhhCCcceee
Q 006111          120 ACNALSLICVPLYDTLGPGAVNFILDHAEIDFVFVQDKKVKELLSPDCRSAQRLRVMVCFTSLTAEQKEMAVQTGIKPYS  199 (660)
Q Consensus       120 A~~~~G~~~vpl~~~~~~~~l~~~l~~~~~~~ii~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~  199 (660)
                      ||+++|++++|++|.++.+++..+++.++++++|++......+...         .++                     .
T Consensus        74 a~~~aG~~~vpi~p~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~---------~~~---------------------~  123 (705)
T PRK06060         74 ACLARGVMAFLANPELHRDDHALAARNTEPALVVTSDALRDRFQPS---------RVA---------------------E  123 (705)
T ss_pred             HHHHhCcEEEecCCCCCHHHHHHHHhcCCCcEEEEchHHhhhhccc---------ccc---------------------h
Confidence            9999999999999999999999999999999999987654432110         000                     0


Q ss_pred             HHHHHhcC-ccCCccCCCCCCCceEEEEecCCCCCCCceeeecchhHHHHhhhhh-hhcccccCCCCCCcEEEEecChhH
Q 006111          200 WDEFLHLG-KVNEMEILPPQPFNICTIMYTSGTSGDPKGVVLTHETIATFVSGVD-LFLDQFEDKMTVDDVYLSFLPLAH  277 (660)
Q Consensus       200 ~~~~~~~~-~~~~~~~~~~~~~~~~~i~~TSGTTG~pK~v~~th~~l~~~~~~~~-~~~~~~~~~~~~~~~~l~~~pl~~  277 (660)
                      ..++.... ........+..++++++++|||||||.||+|.++|+++.+.+..+. ..+     ++..++++++..|++|
T Consensus       124 ~~~~~~~~~~~~~~~~~~~~~~~~a~il~TSGSTG~PKgV~~sh~~~~~~~~~~~~~~~-----~~~~~d~~l~~~~~~~  198 (705)
T PRK06060        124 AAELMSEAARVAPGGYEPMGGDALAYATYTSGTTGPPKAAIHRHADPLTFVDAMCRKAL-----RLTPEDTGLCSARMYF  198 (705)
T ss_pred             hhhhhhhccccCCCCCCCCCCCCeEEEEECCCCCCCCcEEEEccccHHHHHHHHHHHhh-----CCCCcceeEEeccchh
Confidence            00111100 0011112234578999999999999999999999999988776543 234     6788899999999999


Q ss_pred             HHHHHH-HHHHhhcCcEEEEecC--ChhhHHHHhhhhcCeEEEechHHHHHHHHHHHHHHHhhchHHHHHHHHHHHHHHH
Q 006111          278 ILDRVI-EEYFFRRGASVGYYHG--DLNALRDDLMELKPTLLAGVPRVFEKIHEGIKKALEELRPLRRRIFDALYKYKLA  354 (660)
Q Consensus       278 ~~g~~~-~l~~l~~G~~~v~~~~--~~~~~~~~i~~~~~t~~~~~p~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~  354 (660)
                      .+++.. ++.+++.|+++++.+.  ++..+...+.++++|+++++|+++..+.+....                      
T Consensus       199 ~~~~~~~~~~~l~~G~~~v~~~~~~~~~~~~~~i~~~~~t~~~~~P~~l~~l~~~~~~----------------------  256 (705)
T PRK06060        199 AYGLGNSVWFPLATGGSAVINSAPVTPEAAAILSARFGPSVLYGVPNFFARVIDSCSP----------------------  256 (705)
T ss_pred             hcchhHHHHHHHhcCCEEEEeCCCCCHHHHHHHHHhcCCeEEeeHHHHHHHHHHhccc----------------------
Confidence            888754 6777999999998864  788889999999999999999999887642110                      


Q ss_pred             HHhhCCCCCCcchhhhHHHHHHHHHHhCCcEeEEEEccCCCCHHHHHHHHHhc-CCceeeecCCCCCCCceecccCCCcc
Q 006111          355 WMNMGYKQREASPLADLLAFRKVKARLGGRLRLVISGGAPLSTEVEEFLRVTC-CAFLVQGYGLTETCGPTTVCFPDEMC  433 (660)
Q Consensus       355 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lr~i~~~G~~l~~~~~~~~~~~~-~~~v~~~YG~tE~~~~~~~~~~~~~~  433 (660)
                                               ...+++|.+++||+++++++.+.+.+.+ ++++++.||+||++..+....... .
T Consensus       257 -------------------------~~~~slr~i~~gGe~l~~~~~~~~~~~~~~~~~~~~YG~tE~~~~~~~~~~~~-~  310 (705)
T PRK06060        257 -------------------------DSFRSLRCVVSAGEALELGLAERLMEFFGGIPILDGIGSTEVGQTFVSNRVDE-W  310 (705)
T ss_pred             -------------------------ccccceeEEEEecCcCCHHHHHHHHHHcCCCceEeeeeccccCceEEeccCCC-C
Confidence                                     0014899999999999999999999888 589999999999987654443222 2


Q ss_pred             ccCccCCCccCeeEEeeecCCCCCCCCCCCCCceEEEccCCcccccCCCchhhhhcccCCccccCceEEECCCCcEEEEe
Q 006111          434 MVGTAGPVSVYSELRLEEVPEMGYSPLDDPPCGEVCVRGKTLFSGYYKNPDLTRESIIDGWFHTGDIGQILPNGVVKIID  513 (660)
Q Consensus       434 ~~~~~G~~~~~~~v~ivd~~~~~~~~~~~~~~Gei~v~g~~~~~gy~~~~~~~~~~~~~g~~~TGDl~~~~~~G~l~~~G  513 (660)
                      ..+++|+|+++++++|+| +++.  +++.|+.|||||+|++++.||+++++.+..  .+|||+|||+|++++||++++.|
T Consensus       311 ~~~~iG~p~~~~~v~i~d-~~g~--~~~~g~~GEl~i~g~~v~~GY~~~~~~~~~--~~~~~~TGDl~~~~~dG~l~~~G  385 (705)
T PRK06060        311 RLGTLGRVLPPYEIRVVA-PDGT--TAGPGVEGDLWVRGPAIAKGYWNRPDSPVA--NEGWLDTRDRVCIDSDGWVTYRC  385 (705)
T ss_pred             CcCcccccCCCcEEEEEC-CCCC--CCCCCCceEEEEccchhhhhhhCCCccccc--CCCcEECCeeEEECCCceEEEec
Confidence            347899999999999999 6665  445668999999999999999999876432  57999999999999999999999


Q ss_pred             ccCCeeEcCCCeeecchhHHHHHhcCcCcceEEEEecCCC---CeEEEEEEcChhhHHHHHHHCCCCCcHHHHhccHHHH
Q 006111          514 RKKNLIKISQGEYVALEYLENVYCVAPIIEDIWVYGDSLK---SMLVAVVVPCEEDTKKWAYSNGHAGSFLELCSLVQLQ  590 (660)
Q Consensus       514 R~~d~i~~~~G~~v~~~~iE~~l~~~p~V~~~~V~~~~~~---~~~~a~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  590 (660)
                      |.||+||+ +|++|+|.+||+.|.+||.|.+|+|++.++.   +.++++|++..+..                 .+.+  
T Consensus       386 R~dd~ik~-~G~~v~~~eIE~~l~~~~~V~~a~vv~~~~~~~~~~~~a~vv~~~~~~-----------------~~~~--  445 (705)
T PRK06060        386 RADDTEVI-GGVNVDPREVERLIIEDEAVAEAAVVAVRESTGASTLQAFLVATSGAT-----------------IDGS--  445 (705)
T ss_pred             ccCceEEE-CCEEECHHHHHHHHHhCCCeeEEEEEeecCccCCeeEEEEEEeccccC-----------------cChH--
Confidence            99999997 7999999999999999999999999987654   47889988765420                 0111  


Q ss_pred             HHHHHHHHHHHHhCCCCCceeeeEEEEecCCCCCCCCccccccccchHHHHHHHH
Q 006111          591 NYILSELKNAAERNKLRGFEHIKGVILDPRPFDMERDLVTATLKKKRNKLLIYYQ  645 (660)
Q Consensus       591 ~~~~~~l~~~~~~~~l~~~~~p~~i~~~~~~~~~~~~P~t~~GKv~R~~l~~~~~  645 (660)
                        ..++++++++ .+||.|++|..|++++      .+|+|++||++|++|++.+.
T Consensus       446 --~~~~i~~~l~-~~L~~~~~P~~i~~v~------~iP~t~~GKidr~~L~~~~~  491 (705)
T PRK06060        446 --VMRDLHRGLL-NRLSAFKVPHRFAVVD------RLPRTPNGKLVRGALRKQSP  491 (705)
T ss_pred             --HHHHHHHHHH-HhCCCCcCCcEEEEee------cCCCCcchhhHHHHHHhhcc
Confidence              1234444554 6899999999999874      46899999999999998764

>TIGR03443 alpha_am_amid L-aminoadipate-semialdehyde dehydrogenase

Probab=100.00  E-value=5.8e-63  Score=602.62  Aligned_cols=538  Identities=17%  Similarity=0.132  Sum_probs=403.5

Q ss_pred             CCcHHHHHHHHHHhCCCCCceeeeccccCC---CCCceEEeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEeCCchhHHHH
Q 006111           41 LNTAWDIFSMSVQKYPGNRMLGWRPFVDGK---FGPYVWKTYKEVYEEVLQIVSALRASGAEPGCRVGIYGANCPQWVEA  117 (660)
Q Consensus        41 ~~ti~~~l~~~a~~~pd~~a~~~~~~~d~~---~~~~~~~Ty~ql~~~v~~lA~~L~~~Gl~~gd~V~l~~~n~~e~~~~  117 (660)
                      ..++.++|+++++++|+++|+++.   +..   ....+++||+||.++++++|++|.+.|+++||+|+++++|+++++++
T Consensus       235 ~~~l~~~~~~~a~~~pd~~A~~~~---~~~~~~~~~~~~lTY~eL~~~~~~lA~~L~~~gv~~g~~V~i~~~~~~~~i~~  311 (1389)
T TIGR03443       235 RGAIHDIFADNAEKHPDRTCVVET---PSFLDPSSKTRSFTYKQINEASNILAHYLLKTGIKRGDVVMIYAYRGVDLVVA  311 (1389)
T ss_pred             cCcHHHHHHHHHHhCCCCeEEEec---cccccccCCCceeeHHHHHHHHHHHHHHHHHhCCCCCCEEEEEecCCHHHHHH
Confidence            368999999999999999999864   211   12346899999999999999999999999999999999999999999


Q ss_pred             HHHHHhCCCeEEecCCCCChhHHHHHHhcccceEEEEccchh---hhhhccccccc---cCccEEEEecCCcHHHHHHHh
Q 006111          118 MEACNALSLICVPLYDTLGPGAVNFILDHAEIDFVFVQDKKV---KELLSPDCRSA---QRLRVMVCFTSLTAEQKEMAV  191 (660)
Q Consensus       118 ~lA~~~~G~~~vpl~~~~~~~~l~~~l~~~~~~~ii~~~~~~---~~~~~~~~~~~---~~~~~i~~~~~~~~~~~~~~~  191 (660)
                      +|||+++|++++|++|.++.+++..+++.++++++|++....   ..+........   .....+...+....       
T Consensus       312 ~lA~l~~G~~~vpldp~~p~~~~~~~l~~~~~~~li~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------  384 (1389)
T TIGR03443       312 VMGVLKAGATFSVIDPAYPPARQTIYLSVAKPRALIVIEKAGTLDQLVRDYIDKELELRTEIPALALQDDGSL-------  384 (1389)
T ss_pred             HHHHHhhCcEEeccCCCCcHHHHHHHHHhcCCCEEEEeccccccchhhhhhhhcccccccccceEEecccccc-------
Confidence            999999999999999999999999999999999999876421   11100000000   01111111110000       


Q ss_pred             hCCcceeeHHHHHhcCc--cCCccCCCCCCCceEEEEecCCCCCCCceeeecchhHHHHhhhhhhhcccccCCCCCCcEE
Q 006111          192 QTGIKPYSWDEFLHLGK--VNEMEILPPQPFNICTIMYTSGTSGDPKGVVLTHETIATFVSGVDLFLDQFEDKMTVDDVY  269 (660)
Q Consensus       192 ~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~i~~TSGTTG~pK~v~~th~~l~~~~~~~~~~~~~~~~~~~~~~~~  269 (660)
                      ..........+......  ..........++++++|+|||||||.||||+++|+++.+.+..+...+     ++..++++
T Consensus       385 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~a~ii~TSGSTG~PKgV~~sh~~l~~~~~~~~~~~-----~~~~~d~~  459 (1389)
T TIGR03443       385 VGGSLEGGETDVLAPYQALKDTPTGVVVGPDSNPTLSFTSGSEGIPKGVLGRHFSLAYYFPWMAKRF-----GLSENDKF  459 (1389)
T ss_pred             cccccccccccccccccccccCCCCCcCCCCCceEEEECCCCCCCCCEEEeccHHHHHHHHHHHHhc-----CCCCCCEE
Confidence            00000000000000000  001112234678999999999999999999999999999988877766     78899999


Q ss_pred             EEecChhHHHHHHHHHHHhhcCcEEEEecC----ChhhHHHHhhhhcCeEEEechHHHHHHHHHHHHHHHhhchHHHHHH
Q 006111          270 LSFLPLAHILDRVIEEYFFRRGASVGYYHG----DLNALRDDLMELKPTLLAGVPRVFEKIHEGIKKALEELRPLRRRIF  345 (660)
Q Consensus       270 l~~~pl~~~~g~~~~l~~l~~G~~~v~~~~----~~~~~~~~i~~~~~t~~~~~p~~~~~l~~~~~~~~~~~~~~~~~~~  345 (660)
                      +...|++|..++..++.+++.|+++++.+.    ++..+++.|+++++|+++++|++++.|......             
T Consensus       460 ~~~~~~~~d~~~~~i~~~L~~G~~l~~~~~~~~~~~~~l~~~i~~~~vt~~~~~Ps~~~~l~~~~~~-------------  526 (1389)
T TIGR03443       460 TMLSGIAHDPIQRDMFTPLFLGAQLLVPTADDIGTPGRLAEWMAKYGATVTHLTPAMGQLLSAQATT-------------  526 (1389)
T ss_pred             EEecCceecchHHHHHHHHhCCCEEEEcChhhccCHHHHHHHHHHhCCeEEEeCHHHHHHHHhcccc-------------
Confidence            999999999888888999999999998764    678999999999999999999999887531100             


Q ss_pred             HHHHHHHHHHHhhCCCCCCcchhhhHHHHHHHHHHhCCcEeEEEEccCCCCHHHHHHHHHhc-CCceeeecCCCCCCCce
Q 006111          346 DALYKYKLAWMNMGYKQREASPLADLLAFRKVKARLGGRLRLVISGGAPLSTEVEEFLRVTC-CAFLVQGYGLTETCGPT  424 (660)
Q Consensus       346 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lr~i~~~G~~l~~~~~~~~~~~~-~~~v~~~YG~tE~~~~~  424 (660)
                                                         ..+++|.+++||+++++...+.+.+.. ++.+++.||+||++..+
T Consensus       527 -----------------------------------~~~~lr~~~~gGe~l~~~~~~~~~~~~~~~~l~n~YG~TE~~~~~  571 (1389)
T TIGR03443       527 -----------------------------------PIPSLHHAFFVGDILTKRDCLRLQTLAENVCIVNMYGTTETQRAV  571 (1389)
T ss_pred             -----------------------------------cCCCccEEEEecccCCHHHHHHHHHhCCCCEEEECccCCccceeE
Confidence                                               014899999999999999999888765 78999999999998776


Q ss_pred             ecccCCC----------ccccCccCCCccCeeEEeeecCCCCCCCCCCCCCceEEEccCCcccccCCCchhhhhccc---
Q 006111          425 TVCFPDE----------MCMVGTAGPVSVYSELRLEEVPEMGYSPLDDPPCGEVCVRGKTLFSGYYKNPDLTRESII---  491 (660)
Q Consensus       425 ~~~~~~~----------~~~~~~~G~~~~~~~v~ivd~~~~~~~~~~~~~~Gei~v~g~~~~~gy~~~~~~~~~~~~---  491 (660)
                      +......          .....++|.|+++++++|+| +++...+++.|+.|||+|+||+++.||+++++.+.+.|.   
T Consensus       572 ~~~~~~~~~~~~~~~~~~~~~~~~G~~~~~~~~~ivd-~~~~~~~~~~G~~GEL~i~G~~v~~GY~~~p~~t~~~f~~~~  650 (1389)
T TIGR03443       572 SYFEIPSRSSDSTFLKNLKDVMPAGKGMKNVQLLVVN-RNDRTQTCGVGEVGEIYVRAGGLAEGYLGLPELNAEKFVNNW  650 (1389)
T ss_pred             EEEEccccccccchhhcccCcCcCCCccCCCEEEEEC-CccCCCcCCCCCceEEEecccccchhcCCChhHhhhhccCCc
Confidence            6433211          01235789999999999999 666556677789999999999999999999999998872   


Q ss_pred             --------------------------CCccccCceEEECCCCcEEEEeccCCeeEcCCCeeecchhHHHHHhcCcCcceE
Q 006111          492 --------------------------DGWFHTGDIGQILPNGVVKIIDRKKNLIKISQGEYVALEYLENVYCVAPIIEDI  545 (660)
Q Consensus       492 --------------------------~g~~~TGDl~~~~~~G~l~~~GR~~d~i~~~~G~~v~~~~iE~~l~~~p~V~~~  545 (660)
                                                ++||+|||+|++++||.|+++||.||+||+ +|++|+|.|||++|.+||.|.+|
T Consensus       651 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~y~TGDlg~~~~dG~l~~~GR~dd~Iki-~G~rI~p~eIE~~l~~~p~V~~a  729 (1389)
T TIGR03443       651 FVDPSHWIDLDKENNKPEREFWLGPRDRLYRTGDLGRYLPDGNVECCGRADDQVKI-RGFRIELGEIDTHLSQHPLVREN  729 (1389)
T ss_pred             ccCcccccccccccccccccccCCCccceeecCCceeEcCCCCEEEecccCCEEEe-CcEEecHHHHHHHHHhCcchhee
Confidence                                      479999999999999999999999999997 89999999999999999999999


Q ss_pred             EEEecCCC---CeEEEEEEcChhhH--HHHHHHCCCCCcHHHHhccHHHHHHHHHHHHHHHHhCCCCCceeeeEEEEecC
Q 006111          546 WVYGDSLK---SMLVAVVVPCEEDT--KKWAYSNGHAGSFLELCSLVQLQNYILSELKNAAERNKLRGFEHIKGVILDPR  620 (660)
Q Consensus       546 ~V~~~~~~---~~~~a~v~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~l~~~~~p~~i~~~~~  620 (660)
                      +|++.+++   ..++|+|++..+..  ..+........................++++++++ .+||.|++|..++++  
T Consensus       730 ~v~~~~~~~~~~~lva~vv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~-~~Lp~y~~P~~~~~~--  806 (1389)
T TIGR03443       730 VTLVRRDKDEEPTLVSYIVPQDKSDELEEFKSEVDDEESSDPVVKGLIKYRKLIKDIREYLK-KKLPSYAIPTVIVPL--  806 (1389)
T ss_pred             EEEEeeCCCCCeEEEEEEeccCccccccccccccccccccccchhhhhhhhhhHHHHHHHHH-hhCCcccCCceEEEc--
Confidence            99875433   48999999863210  00000000000000000001111233456666665 789999999988876  


Q ss_pred             CCCCCCCccccccccchHHHHHHHHHHHHH
Q 006111          621 PFDMERDLVTATLKKKRNKLLIYYQVEIDQ  650 (660)
Q Consensus       621 ~~~~~~~P~t~~GKv~R~~l~~~~~~~i~~  650 (660)
                          +.+|+|++||++|++|++.+..+++.
T Consensus       807 ----~~lP~t~~GKidr~~L~~~~~~~~~~  832 (1389)
T TIGR03443       807 ----KKLPLNPNGKVDKPALPFPDTAQLAA  832 (1389)
T ss_pred             ----ccCCCCCCccccHhhcCCCchhhhhh
Confidence                44689999999999998665555543

Members of this protein family are L-aminoadipate-semialdehyde dehydrogenase (EC 1.2.1.31), product of the LYS2 gene. It is also called alpha-aminoadipate reductase. In fungi, lysine is synthesized via aminoadipate. Currently, all members of this family are fungal.

>PRK08316 acyl-CoA synthetase; Validated

Probab=100.00  E-value=4.5e-62  Score=538.66  Aligned_cols=506  Identities=25%  Similarity=0.298  Sum_probs=410.9

Q ss_pred             CCcHHHHHHHHHHhCCCCCceeeeccccCCCCCceEEeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEeCCchhHHHHHHH
Q 006111           41 LNTAWDIFSMSVQKYPGNRMLGWRPFVDGKFGPYVWKTYKEVYEEVLQIVSALRASGAEPGCRVGIYGANCPQWVEAMEA  120 (660)
Q Consensus        41 ~~ti~~~l~~~a~~~pd~~a~~~~~~~d~~~~~~~~~Ty~ql~~~v~~lA~~L~~~Gl~~gd~V~l~~~n~~e~~~~~lA  120 (660)
                      .+++.++|...++++|+++|+.+.   +      +.+||.||.+++.++|..|.+.|+++||+|+++++|+++++++++|
T Consensus        10 ~~~l~~~l~~~a~~~~~~~a~~~~---~------~~~Ty~~l~~~~~~~a~~L~~~gi~~~~~V~l~~~~~~~~~~~~~a   80 (523)
T PRK08316         10 RQTIGDILRRSARRYPDKTALVFG---D------RSWTYAELDAAVNRVAAALLDLGLKKGDRVAALGHNSDAYALLWLA   80 (523)
T ss_pred             CCCHHHHHHHHHHHCCCCeEEEEC---C------ceeeHHHHHHHHHHHHHHHHHcCCCCCCEEEEECCCCHHHHHHHHH
Confidence            478999999999999999999876   4      5799999999999999999999999999999999999999999999


Q ss_pred             HHhCCCeEEecCCCCChhHHHHHHhcccceEEEEccchhhhhhccccccccCccEEEEecCCcHHHHHHHhhCCcceeeH
Q 006111          121 CNALSLICVPLYDTLGPGAVNFILDHAEIDFVFVQDKKVKELLSPDCRSAQRLRVMVCFTSLTAEQKEMAVQTGIKPYSW  200 (660)
Q Consensus       121 ~~~~G~~~vpl~~~~~~~~l~~~l~~~~~~~ii~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~  200 (660)
                      |+++|++++|+++..+.+++..+++.++++++|++......+.+...........+.......        ........+
T Consensus        81 ~~~~G~~~v~l~~~~~~~~i~~~l~~~~~~~ii~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--------~~~~~~~~~  152 (523)
T PRK08316         81 CARAGAVHVPVNFMLTGEELAYILDHSGARAFLVDPALAPTAEAALALLPVDTLILSLVLGGR--------EAPGGWLDF  152 (523)
T ss_pred             HHhcCcEEEecccccCHHHHHHHHHhCCCCEEEEccchHHHHHHHhhhcCccceeeeeccccc--------ccccchhhH
Confidence            999999999999999999999999999999999998876655332211100000010000000        001122344


Q ss_pred             HHHHhcCccCCccCCCCCCCceEEEEecCCCCCCCceeeecchhHHHHhhhhhhhcccccCCCCCCcEEEEecChhHHHH
Q 006111          201 DEFLHLGKVNEMEILPPQPFNICTIMYTSGTSGDPKGVVLTHETIATFVSGVDLFLDQFEDKMTVDDVYLSFLPLAHILD  280 (660)
Q Consensus       201 ~~~~~~~~~~~~~~~~~~~~~~~~i~~TSGTTG~pK~v~~th~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~pl~~~~g  280 (660)
                      .++..... ..........+++++++|||||||.||+|.+||.++...+......+     ++..+++++..+|++|..+
T Consensus       153 ~~~~~~~~-~~~~~~~~~~~~~a~i~~TSGtTG~PK~v~~s~~~l~~~~~~~~~~~-----~~~~~~~~~~~~p~~h~~g  226 (523)
T PRK08316        153 ADWAEAGS-VAEPDVELADDDLAQILYTSGTESLPKGAMLTHRALIAEYVSCIVAG-----DMSADDIPLHALPLYHCAQ  226 (523)
T ss_pred             HHHHhcCC-CccCccCCCCCCeEEEEeCCCCCCCCcEEEEecHHHHHHHHHHHHHh-----CCCCCceEEEccCCchhhh
Confidence            44443321 12233456788999999999999999999999999998877766666     7889999999999999998


Q ss_pred             HHH-HHHHhhcCcEEEEecC-ChhhHHHHhhhhcCeEEEechHHHHHHHHHHHHHHHhhchHHHHHHHHHHHHHHHHHhh
Q 006111          281 RVI-EEYFFRRGASVGYYHG-DLNALRDDLMELKPTLLAGVPRVFEKIHEGIKKALEELRPLRRRIFDALYKYKLAWMNM  358 (660)
Q Consensus       281 ~~~-~l~~l~~G~~~v~~~~-~~~~~~~~i~~~~~t~~~~~p~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  358 (660)
                      +.. .+.+++.|+++++.+. ++..+++.++++++|+++++|.++..+.+....                          
T Consensus       227 ~~~~~~~~~~~G~~~~~~~~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~--------------------------  280 (523)
T PRK08316        227 LDVFLGPYLYVGATNVILDAPDPELILRTIEAERITSFFAPPTVWISLLRHPDF--------------------------  280 (523)
T ss_pred             HHHHHHHHHhcCceEEEecCCCHHHHHHHHHHhCCeEEEeCHHHHHHHHcCccc--------------------------
Confidence            876 4456889999999865 999999999999999999999999887642110                          


Q ss_pred             CCCCCCcchhhhHHHHHHHHHHhCCcEeEEEEccCCCCHHHHHHHHHhc-CCceeeecCCCCCCCceecccCCC-ccccC
Q 006111          359 GYKQREASPLADLLAFRKVKARLGGRLRLVISGGAPLSTEVEEFLRVTC-CAFLVQGYGLTETCGPTTVCFPDE-MCMVG  436 (660)
Q Consensus       359 ~~~~~~~~~~~~~~~~~~~~~~~~~~lr~i~~~G~~l~~~~~~~~~~~~-~~~v~~~YG~tE~~~~~~~~~~~~-~~~~~  436 (660)
                                 ...++        +++|.+++||+.++.++.+.+++.+ ++++++.||+||++.+++...... ....+
T Consensus       281 -----------~~~~~--------~~l~~~~~gg~~~~~~~~~~~~~~~~~~~~~~~YG~tE~~~~~~~~~~~~~~~~~~  341 (523)
T PRK08316        281 -----------DTRDL--------SSLRKGYYGASIMPVEVLKELRERLPGLRFYNCYGQTEIAPLATVLGPEEHLRRPG  341 (523)
T ss_pred             -----------ccCCc--------ccceEEEEcCCcCCHHHHHHHHHHcCCCceeeeecccccCccccccCccccccccC
Confidence                       11111        3899999999999999999999987 789999999999998776654332 33457


Q ss_pred             ccCCCccCeeEEeeecCCCCCCCCCCCCCceEEEccCCcccccCCCchhhhhcccCCccccCceEEECCCCcEEEEeccC
Q 006111          437 TAGPVSVYSELRLEEVPEMGYSPLDDPPCGEVCVRGKTLFSGYYKNPDLTRESIIDGWFHTGDIGQILPNGVVKIIDRKK  516 (660)
Q Consensus       437 ~~G~~~~~~~v~ivd~~~~~~~~~~~~~~Gei~v~g~~~~~gy~~~~~~~~~~~~~g~~~TGDl~~~~~~G~l~~~GR~~  516 (660)
                      ++|.|+++++++|+| +++..  +..|+.|||+++|+.++.||++++..+.+.|.+|||+|||+|+++++|.+++.||.+
T Consensus       342 ~~G~~~~~~~~~i~~-~~~~~--~~~g~~Gei~v~~~~~~~~y~~~~~~~~~~~~~~~~~TGDl~~~~~~g~l~i~gR~~  418 (523)
T PRK08316        342 SAGRPVLNVETRVVD-DDGND--VAPGEVGEIVHRSPQLMLGYWDDPEKTAEAFRGGWFHSGDLGVMDEEGYITVVDRKK  418 (523)
T ss_pred             CcccCCCCcEEEEEc-CCCCC--CCCCCcceEEEECCchhhhhcCCHHHHHHHhhCCCeeccceEEEcCCceEEEecccc
Confidence            999999999999999 66654  444689999999999999999999999999999999999999999999999999999


Q ss_pred             CeeEcCCCeeecchhHHHHHhcCcCcceEEEEecCCC---CeEEEEEEcChhhHHHHHHHCCCCCcHHHHhccHHHHHHH
Q 006111          517 NLIKISQGEYVALEYLENVYCVAPIIEDIWVYGDSLK---SMLVAVVVPCEEDTKKWAYSNGHAGSFLELCSLVQLQNYI  593 (660)
Q Consensus       517 d~i~~~~G~~v~~~~iE~~l~~~p~V~~~~V~~~~~~---~~~~a~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  593 (660)
                      |+|++ +|.+|+|.+||+.|.++++|.+|+|++.+++   +.++++++++++.          ..      .        
T Consensus       419 ~~i~~-~G~~i~~~~iE~~l~~~~~v~~~~v~~~~~~~~~~~~~~~v~~~~~~----------~~------~--------  473 (523)
T PRK08316        419 DMIKT-GGENVASREVEEALYTHPAVAEVAVIGLPDPKWIEAVTAVVVPKAGA----------TV------T--------  473 (523)
T ss_pred             cEEEe-CCeEECHHHHHHHHHhCCChheEeEecccCcccCCeEEEEEEECCCC----------CC------C--------
Confidence            99997 8999999999999999999999999997654   4788888887642          00      1        


Q ss_pred             HHHHHHHHHhCCCCCceeeeEEEEecCCCCCCCCccccccccchHHHHHHHHHHHH
Q 006111          594 LSELKNAAERNKLRGFEHIKGVILDPRPFDMERDLVTATLKKKRNKLLIYYQVEID  649 (660)
Q Consensus       594 ~~~l~~~~~~~~l~~~~~p~~i~~~~~~~~~~~~P~t~~GKv~R~~l~~~~~~~i~  649 (660)
                      .+.+.++++ .+|+.|++|..+++++      .+|+|++||++|++|+++|.+.++
T Consensus       474 ~~~l~~~~~-~~l~~~~~p~~i~~v~------~~p~t~~gKi~r~~l~~~~~~~~~  522 (523)
T PRK08316        474 EDELIAHCR-ARLAGFKVPKRVIFVD------ELPRNPSGKILKRELRERYAGAFT  522 (523)
T ss_pred             HHHHHHHHH-HhcccCCCCcEEEEec------CCCCCCccceeHHHHHHHHHhhcc
Confidence            122333333 5789999999999874      358999999999999999988765

>TIGR03208 cyc_hxne_CoA_lg cyclohexanecarboxylate-CoA ligase

Probab=100.00  E-value=7.1e-62  Score=537.85  Aligned_cols=499  Identities=21%  Similarity=0.229  Sum_probs=398.1

Q ss_pred             CcHHHHHHHHHHhCCCCCceeeeccccCCCCCceEEeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEeCCchhHHHHHHHH
Q 006111           42 NTAWDIFSMSVQKYPGNRMLGWRPFVDGKFGPYVWKTYKEVYEEVLQIVSALRASGAEPGCRVGIYGANCPQWVEAMEAC  121 (660)
Q Consensus        42 ~ti~~~l~~~a~~~pd~~a~~~~~~~d~~~~~~~~~Ty~ql~~~v~~lA~~L~~~Gl~~gd~V~l~~~n~~e~~~~~lA~  121 (660)
                      .++.+.|+..++.+|+++|+++.   +...+..+.+||.||.+++.++|.+|.+.|+++||+|+++++|++++++++|||
T Consensus        22 ~~~~~~~~~~~~~~p~~~a~~~~---~~~~~~~~~~Ty~eL~~~~~~~a~~L~~~g~~~g~~V~i~~~~~~~~~~~~la~   98 (538)
T TIGR03208        22 RTINDHFDAAVANCPDKPALTAY---RDGHGAVRRFSYRELDCRVDRIAVGLARLGVGRGDVVSFQLPNRWEFTALYLAC   98 (538)
T ss_pred             CcHHHHHHHHHHHCCCceEEEee---cccCCCcceecHHHHHHHHHHHHHHHHHcCCCCCCEEEEECCCCHHHHHHHHHH
Confidence            47999999999999999999864   222233568999999999999999999999999999999999999999999999


Q ss_pred             HhCCCeEEecCCCCChhHHHHHHhcccceEEEEccchhh----hhhccccccccCccEEEEecCCcHHHHHHHhhCCcce
Q 006111          122 NALSLICVPLYDTLGPGAVNFILDHAEIDFVFVQDKKVK----ELLSPDCRSAQRLRVMVCFTSLTAEQKEMAVQTGIKP  197 (660)
Q Consensus       122 ~~~G~~~vpl~~~~~~~~l~~~l~~~~~~~ii~~~~~~~----~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~  197 (660)
                      +++|++++|+++.++.+++.++++.++++++++++....    ...............++..+....             
T Consensus        99 ~~~G~~~v~l~~~~~~~~l~~~l~~~~~~~li~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------------  165 (538)
T TIGR03208        99 ARIGAVLNPLMPIFRERELSFMLNHADSKVFVVPSVFRGFDHAAMARELQSKLPALRQVVVIDGDGD-------------  165 (538)
T ss_pred             HhcCEEEeccCcccCHHHHHHHHHhcCCeEEEEccccccccHHHHHHHHhccCCcceEEEEecCCCC-------------
Confidence            999999999999999999999999999999999876421    011111112233344555443211             


Q ss_pred             eeHHHHHhcCccCC-------ccCCCCCCCceEEEEecCCCCCCCceeeecchhHHHHhhhhhhhcccccCCCCCCcEEE
Q 006111          198 YSWDEFLHLGKVNE-------MEILPPQPFNICTIMYTSGTSGDPKGVVLTHETIATFVSGVDLFLDQFEDKMTVDDVYL  270 (660)
Q Consensus       198 ~~~~~~~~~~~~~~-------~~~~~~~~~~~~~i~~TSGTTG~pK~v~~th~~l~~~~~~~~~~~~~~~~~~~~~~~~l  270 (660)
                      ..+..++.......       .......++++++++|||||||.||+|+++|+++...+......+     ++..+++++
T Consensus       166 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~i~~TSGtTG~PK~v~~s~~~~~~~~~~~~~~~-----~~~~~d~~l  240 (538)
T TIGR03208       166 DSFDRVLMTPERDDTPDAAAILAGPRPSPDDVTQLIYTSGTTGEPKGVMHTANTLFSNIHPYAERL-----ELGGGDVIL  240 (538)
T ss_pred             cCHHHHhhccccccccccccccccCCCCCCCeEEEEECCCCCCCCcEEEeehHHHHHHHHHHHhhc-----CCCCCCeEE
Confidence            12333322111000       111235679999999999999999999999999998888776666     778899999


Q ss_pred             EecChhHHHHHHH-HHHHhhcCcEEEEecC-ChhhHHHHhhhhcCeEEEechHHHHHHHHHHHHHHHhhchHHHHHHHHH
Q 006111          271 SFLPLAHILDRVI-EEYFFRRGASVGYYHG-DLNALRDDLMELKPTLLAGVPRVFEKIHEGIKKALEELRPLRRRIFDAL  348 (660)
Q Consensus       271 ~~~pl~~~~g~~~-~l~~l~~G~~~v~~~~-~~~~~~~~i~~~~~t~~~~~p~~~~~l~~~~~~~~~~~~~~~~~~~~~~  348 (660)
                      +.+|++|..++.. .+.+++.|+++++.+. ++..+++.++++++|++.++|.++..+........              
T Consensus       241 ~~~pl~h~~g~~~~~~~~l~~g~~~~~~~~~~~~~~~~~l~~~~vt~~~~~p~~~~~l~~~~~~~~--------------  306 (538)
T TIGR03208       241 MASPMAHQTGFMYGLMMPLILNATAVLQDIWNPARAAELIRETGVTFTMASTPFLTDLCRAVKESG--------------  306 (538)
T ss_pred             EeCCchhHHHHHHHHHHHHHcCCEEEecCccCHHHHHHHHHHhCCeEEecCHHHHHHHHhchhccC--------------
Confidence            9999999988765 6777999999988776 89999999999999999999999988764321110              


Q ss_pred             HHHHHHHHhhCCCCCCcchhhhHHHHHHHHHHhCCcEeEEEEccCCCCHHHHHHHHHhcCCceeeecCCCCCCCceeccc
Q 006111          349 YKYKLAWMNMGYKQREASPLADLLAFRKVKARLGGRLRLVISGGAPLSTEVEEFLRVTCCAFLVQGYGLTETCGPTTVCF  428 (660)
Q Consensus       349 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lr~i~~~G~~l~~~~~~~~~~~~~~~v~~~YG~tE~~~~~~~~~  428 (660)
                                                     ...+++|.+++||+++++.+.+.+.+.+|+++++.||+||++.+.+...
T Consensus       307 -------------------------------~~~~~l~~~~~gG~~~~~~~~~~~~~~~~~~~~~~YG~tE~~~~~~~~~  355 (538)
T TIGR03208       307 -------------------------------APVPSLFTFLCAGAPIPGILVERAWELLGALIVSAWGMTENGAVTVTEP  355 (538)
T ss_pred             -------------------------------CCCCcceEEEEcCCCCCHHHHHHHHHHcCCeEEeeeccCcCCCccccCc
Confidence                                           0114899999999999999999999889999999999999988766554


Q ss_pred             CCC-ccccCccCCCccCeeEEeeecCCCCCCCCCCCCCceEEEccCCcccccCCCchhhhhcccCCccccCceEEECCCC
Q 006111          429 PDE-MCMVGTAGPVSVYSELRLEEVPEMGYSPLDDPPCGEVCVRGKTLFSGYYKNPDLTRESIIDGWFHTGDIGQILPNG  507 (660)
Q Consensus       429 ~~~-~~~~~~~G~~~~~~~v~ivd~~~~~~~~~~~~~~Gei~v~g~~~~~gy~~~~~~~~~~~~~g~~~TGDl~~~~~~G  507 (660)
                      ... .....++|+|++++++++++ +++..  +..|+.|||+++|+.++.||+++++.+.. ..+|||+|||+|++|++|
T Consensus       356 ~~~~~~~~~~~G~~~~g~~v~i~~-~~~~~--~~~g~~Gel~v~g~~~~~gy~~~~~~~~~-~~~~~~~TGD~~~~~~~g  431 (538)
T TIGR03208       356 DDALEKASTTDGRPLPGVEVKVID-ANGAK--LSQGETGRLLVRGCSNFGGYLKRPHLNST-DAEGWFDTGDLAFQDAEG  431 (538)
T ss_pred             ccchhhccCcccccCCCCEEEEEC-CCCCC--CcCCCCcEEEEecCcccccccCCcccccc-cCCCceeccceEEECCCC
Confidence            332 12235789999999999999 66553  45568999999999999999999877642 368999999999999999


Q ss_pred             cEEEEeccCCeeEcCCCeeecchhHHHHHhcCcCcceEEEEecCCC---CeEEEEEEcChhhHHHHHHHCCCCCcHHHHh
Q 006111          508 VVKIIDRKKNLIKISQGEYVALEYLENVYCVAPIIEDIWVYGDSLK---SMLVAVVVPCEEDTKKWAYSNGHAGSFLELC  584 (660)
Q Consensus       508 ~l~~~GR~~d~i~~~~G~~v~~~~iE~~l~~~p~V~~~~V~~~~~~---~~~~a~v~~~~~~~~~~~~~~~~~~~~~~~~  584 (660)
                      .++++||.+|+|++ +|++|+|.+||++|.+||+|.+++|++.++.   +.++++|++..+.        ..        
T Consensus       432 ~l~~~gR~~~~i~~-~G~~v~p~eIE~~l~~~~~v~~~~v~~~~~~~~g~~~~a~v~~~~~~--------~~--------  494 (538)
T TIGR03208       432 YIRINGRSKDVIIR-GGENIPVVEIENLLYQHPAVAQVAIVAYPDERLGERACAVVVPKPGC--------TL--------  494 (538)
T ss_pred             cEEEEeccCceEEE-CCEEECHHHHHHHHhcCcceeeEEEEeccCCCCCceEEEEEEECCCC--------CC--------
Confidence            99999999999996 8999999999999999999999999997654   4788888887542        00        


Q ss_pred             ccHHHHHHHHHHHHHHHHhCCCCCceeeeEEEEecCCCCCCCCccccccccchHHHH
Q 006111          585 SLVQLQNYILSELKNAAERNKLRGFEHIKGVILDPRPFDMERDLVTATLKKKRNKLL  641 (660)
Q Consensus       585 ~~~~~~~~~~~~l~~~~~~~~l~~~~~p~~i~~~~~~~~~~~~P~t~~GKv~R~~l~  641 (660)
                      .        .+.+.+++++.+++.|++|..+++++      .+|+|++||++|++|+
T Consensus       495 ~--------~~~l~~~~~~~~l~~~~~P~~i~~v~------~iP~t~~gKv~r~~L~  537 (538)
T TIGR03208       495 D--------FAAMVAFLKAQKVALQYIPERLEVVD------ALPATPAGKIQKFRLR  537 (538)
T ss_pred             C--------HHHHHHHHHhcchhhccCCcEEEEec------cCCCCCccccchHhhc
Confidence            1        12233444334788999999988874      4589999999999986

Members of this protein family are cyclohexanecarboxylate-CoA ligase. This enzyme prepares the aliphatic ring compound, cyclohexanecarboxylate, for dehydrogenation and then degradation by a pathway also used in benzoyl-CoA degradation in Rhodopseudomonas palustris.

>PRK07769 long-chain-fatty-acid--CoA ligase; Validated

Probab=100.00  E-value=2.1e-62  Score=551.31  Aligned_cols=513  Identities=18%  Similarity=0.154  Sum_probs=388.7

Q ss_pred             CCCCCcHHHHHHHHHHhCCCCCceeeeccccC---CCCCceEEeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEeCCchhH
Q 006111           38 DSDLNTAWDIFSMSVQKYPGNRMLGWRPFVDG---KFGPYVWKTYKEVYEEVLQIVSALRASGAEPGCRVGIYGANCPQW  114 (660)
Q Consensus        38 ~~~~~ti~~~l~~~a~~~pd~~a~~~~~~~d~---~~~~~~~~Ty~ql~~~v~~lA~~L~~~Gl~~gd~V~l~~~n~~e~  114 (660)
                      ++...++.++|+++++++|+++|+++.   +.   ..+.++.+||+||.++++++|++|.+. +++||+|+++++|++++
T Consensus        17 ~~~~~~l~~~l~~~a~~~~~~~a~~~~---~~~~~~~~~~~~~Ty~el~~~v~~lA~~L~~~-~~~gd~V~i~~~n~~e~   92 (631)
T PRK07769         17 FPPNTNLVRHVERWAKVRGDKLAYRFL---DFSTERDGVARDLTWSQFGARNRAVGARLQQV-TKPGDRVAILAPQNLDY   92 (631)
T ss_pred             ccccCCHHHHHHHHHHhCCCCeEEEEe---ccCCCCCCceeEeeHHHHHHHHHHHHHHHHHh-cCCCCEEEEEcCCChHH
Confidence            444578999999999999999999875   31   223457899999999999999999987 89999999999999999


Q ss_pred             HHHHHHHHhCCCeEEec-CCCCC--hhHHHHHHhcccceEEEEccchhhhhhcccccccc--CccEEEEecCCcHHHHHH
Q 006111          115 VEAMEACNALSLICVPL-YDTLG--PGAVNFILDHAEIDFVFVQDKKVKELLSPDCRSAQ--RLRVMVCFTSLTAEQKEM  189 (660)
Q Consensus       115 ~~~~lA~~~~G~~~vpl-~~~~~--~~~l~~~l~~~~~~~ii~~~~~~~~~~~~~~~~~~--~~~~i~~~~~~~~~~~~~  189 (660)
                      ++++|||+++|++++|+ ++..+  .+++..+++.++++++|++......+..... ..+  ....++.++....     
T Consensus        93 ~~~~lA~~~~G~v~vpl~~~~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~-----  166 (631)
T PRK07769         93 LIAFFGALYAGRIAVPLFDPAEPGHVGRLHAVLDDCTPSAILTTTDSAEGVRKFFR-ARPAKERPRVIAVDAVPD-----  166 (631)
T ss_pred             HHHHHHHHHcCCEEEeeCCCCccchHHHHHHHHHhCCCCEEEEChHHHHHHHHHHh-hccccccceEEEcccccc-----
Confidence            99999999999999999 45554  5789999999999999998876543322111 011  1112332221100     


Q ss_pred             HhhCCcceeeHHHHHhcCccCCccCCCCCCCceEEEEecCCCCCCCceeeecchhHHHHhhhhhhhcccccCCCCCCcEE
Q 006111          190 AVQTGIKPYSWDEFLHLGKVNEMEILPPQPFNICTIMYTSGTSGDPKGVVLTHETIATFVSGVDLFLDQFEDKMTVDDVY  269 (660)
Q Consensus       190 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~TSGTTG~pK~v~~th~~l~~~~~~~~~~~~~~~~~~~~~~~~  269 (660)
                                   ..    .......+..++++++|+|||||||.||+|++||+++...+......+     ++..++++
T Consensus       167 -------------~~----~~~~~~~~~~~~d~a~i~~TSGTTG~PKgV~~sh~~l~~~~~~~~~~~-----~~~~~d~~  224 (631)
T PRK07769        167 -------------EV----GATWVPPEANEDTIAYLQYTSGSTRIPAGVQITHLNLPTNVLQVIDAL-----EGQEGDRG  224 (631)
T ss_pred             -------------cc----ccccCCCCCCCCCeEEEEeCCCCCCCCcEEEEcHHHHHHHHHHHHHHc-----CCCCcceE
Confidence                         00    001111234678999999999999999999999999998877766655     77889999


Q ss_pred             EEecChhHHHHHHHHHHHhhcCcEEEEecC-----ChhhHHHHhhhhcC---eEEEechHHHHHHHHHHHHHHHhhchHH
Q 006111          270 LSFLPLAHILDRVIEEYFFRRGASVGYYHG-----DLNALRDDLMELKP---TLLAGVPRVFEKIHEGIKKALEELRPLR  341 (660)
Q Consensus       270 l~~~pl~~~~g~~~~l~~l~~G~~~v~~~~-----~~~~~~~~i~~~~~---t~~~~~p~~~~~l~~~~~~~~~~~~~~~  341 (660)
                      ++++|++|.+|+...+.+++.|+++++.+.     ++..+++.+.++++   +++.++|.++..+.......        
T Consensus       225 l~~~Pl~h~~gl~~~~~~~~~G~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~p~~~~~l~~~~~~~--------  296 (631)
T PRK07769        225 VSWLPFFHDMGLITVLLPALLGHYITFMSPAAFVRRPGRWIRELARKPGGTGGTFSAAPNFAFEHAAARGLP--------  296 (631)
T ss_pred             EEeCCCcCchhhHHHHHHHhhCCeEEEEChHHHHhCHHHHHHHHHhhccccCceEeeCCchHHHHHHhhccc--------
Confidence            999999999999887778888999988752     78889999999886   78999999887664311000        


Q ss_pred             HHHHHHHHHHHHHHHhhCCCCCCcchhhhHHHHHHHHHHhCCcEeEEEEccCCCCHHHHHHHHHhc---CC---ceeeec
Q 006111          342 RRIFDALYKYKLAWMNMGYKQREASPLADLLAFRKVKARLGGRLRLVISGGAPLSTEVEEFLRVTC---CA---FLVQGY  415 (660)
Q Consensus       342 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lr~i~~~G~~l~~~~~~~~~~~~---~~---~v~~~Y  415 (660)
                                              .......++        +++|.+++||+++++++.++|.+.+   |.   .++++|
T Consensus       297 ------------------------~~~~~~~~l--------~~lr~~~~gg~~l~~~~~~~~~~~~~~~g~~~~~i~~~Y  344 (631)
T PRK07769        297 ------------------------KDGEPPLDL--------SNVKGLLNGSEPVSPASMRKFNEAFAPYGLPPTAIKPSY  344 (631)
T ss_pred             ------------------------hhcccCcch--------hheeeEEeccCCCCHHHHHHHHHHHhhcCCChhhccccc
Confidence                                    000001122        4899999999999999999999887   33   599999


Q ss_pred             CCCCCCCceecccCCCc--------------------------cccCccCCCccCeeEEeeecCCCCCCCCCCCCCceEE
Q 006111          416 GLTETCGPTTVCFPDEM--------------------------CMVGTAGPVSVYSELRLEEVPEMGYSPLDDPPCGEVC  469 (660)
Q Consensus       416 G~tE~~~~~~~~~~~~~--------------------------~~~~~~G~~~~~~~v~ivd~~~~~~~~~~~~~~Gei~  469 (660)
                      |+||++..++..+....                          ....++|+|+++.+++|+| ++++ .+++.|+.||||
T Consensus       345 G~TE~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~s~G~~~~~~~~~ivd-~~~g-~~~~~ge~GEl~  422 (631)
T PRK07769        345 GMAEATLFVSTTPMDEEPTVIYVDRDELNAGRFVEVPADAPNAVAQVSAGKVGVSEWAVIVD-PETA-SELPDGQIGEIW  422 (631)
T ss_pred             chhhheeEEeccCCCCCceEEEEcHHHHhCCCeEecCCCCCCceeEEeCCCcCCCcEEEEEc-CCCC-cCCCCCCEEEEE
Confidence            99999876654432210                          0124789999999999998 4433 344567899999


Q ss_pred             EccCCcccccCCCchhhhhccc------------------CCccccCceEEECCCCcEEEEeccCCeeEcCCCeeecchh
Q 006111          470 VRGKTLFSGYYKNPDLTRESII------------------DGWFHTGDIGQILPNGVVKIIDRKKNLIKISQGEYVALEY  531 (660)
Q Consensus       470 v~g~~~~~gy~~~~~~~~~~~~------------------~g~~~TGDl~~~~~~G~l~~~GR~~d~i~~~~G~~v~~~~  531 (660)
                      |+||+++.||+++++.+.+.|.                  +|||+|||+|+++ +|+|+++||.||+||+ +|++|+|.|
T Consensus       423 v~gp~v~~GY~~~~~~t~~~f~~~~~~~~~~~~~~~~~~~~gw~~TGDlg~~~-dG~l~i~GR~~d~Ik~-~G~~V~p~e  500 (631)
T PRK07769        423 LHGNNIGTGYWGKPEETAATFQNILKSRLSESHAEGAPDDALWVRTGDYGVYF-DGELYITGRVKDLVII-DGRNHYPQD  500 (631)
T ss_pred             ecCCCccccccCChhHHHHHHhhhcccccccccccCcccCCCeeeccccccEE-CCEEEEEcccccEEEE-CCeeeCHHH
Confidence            9999999999999999988884                  3899999999995 9999999999999997 899999999


Q ss_pred             HHHHHhc-CcCcce--EEEEecCC----------------------CCeEEEEEEcChhhHHHHHHHCCCCCcHHHHhcc
Q 006111          532 LENVYCV-APIIED--IWVYGDSL----------------------KSMLVAVVVPCEEDTKKWAYSNGHAGSFLELCSL  586 (660)
Q Consensus       532 iE~~l~~-~p~V~~--~~V~~~~~----------------------~~~~~a~v~~~~~~~~~~~~~~~~~~~~~~~~~~  586 (660)
                      ||++|.+ ||.|.+  |+|++.++                      .+.++|+|++.++..       ..        ..
T Consensus       501 IE~~l~~~~p~v~~~~~av~~v~d~~~~~~~~~~~~~~~~~~~~~~ge~~~a~v~~~~~~~-------~~--------~~  565 (631)
T PRK07769        501 LEYTAQEATKALRTGYVAAFSVPANQLPQVVFDDSHAGLKFDPEDTSEQLVIVAERAPGAH-------KL--------DP  565 (631)
T ss_pred             HHHHHHhccccccCCcEEEEEecccccccccccccccccccccCCCCccEEEEEEecCccc-------cc--------cH
Confidence            9999986 899998  89998776                      247888888876420       00        11


Q ss_pred             HHHHHHHHHHHHHHHHhCCCCC-ce-eeeEEEEecCCCCCCCCccccccccchHHHHHHHHH-HHHHHHhh
Q 006111          587 VQLQNYILSELKNAAERNKLRG-FE-HIKGVILDPRPFDMERDLVTATLKKKRNKLLIYYQV-EIDQLYEK  654 (660)
Q Consensus       587 ~~~~~~~~~~l~~~~~~~~l~~-~~-~p~~i~~~~~~~~~~~~P~t~~GKv~R~~l~~~~~~-~i~~~y~~  654 (660)
                      .++.+++++         .|+. |+ .|+.+.+++.    +.||+|++||++|++|++.|.+ .+..-|.+
T Consensus       566 ~~l~~~~~~---------~l~~~~~~~p~~~~~v~~----~~lP~t~~GKi~r~~l~~~~~~~~~~~~~~~  623 (631)
T PRK07769        566 QPIADDIRA---------AIAVRHGVTVRDVLLVPA----GSIPRTSSGKIARRACRAAYLDGSLRSGYGQ  623 (631)
T ss_pred             HHHHHHHHH---------HHHHHcCCCccEEEEECC----CccccCCCcHHHHHHHHHHHHcCCCccccCC
Confidence            233333333         3442 44 4777888742    3478999999999999998753 44444444

>PRK07786 long-chain-fatty-acid--CoA ligase; Validated

Probab=100.00  E-value=8.2e-62  Score=537.56  Aligned_cols=503  Identities=25%  Similarity=0.273  Sum_probs=410.5

Q ss_pred             CCCcHHHHHHHHHHhCCCCCceeeeccccCCCCCceEEeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEeCCchhHHHHHH
Q 006111           40 DLNTAWDIFSMSVQKYPGNRMLGWRPFVDGKFGPYVWKTYKEVYEEVLQIVSALRASGAEPGCRVGIYGANCPQWVEAME  119 (660)
Q Consensus        40 ~~~ti~~~l~~~a~~~pd~~a~~~~~~~d~~~~~~~~~Ty~ql~~~v~~lA~~L~~~Gl~~gd~V~l~~~n~~e~~~~~l  119 (660)
                      .-+|+.+.+..++.++|+++|+.+.   +      +.+||.||.++++++|.+|.+.|+++||+|+++++|+++++++++
T Consensus        15 ~~~n~~~~~~~~a~~~~~~~a~~~~---~------~~~ty~~l~~~~~~~a~~L~~~g~~~g~~V~i~~~~~~~~~~~~~   85 (542)
T PRK07786         15 RRQNWVNQLARHALMQPDAPALRFL---G------NTTTWRELDDRVAALAGALSRRGVGFGDRVLILMLNRTEFVESVL   85 (542)
T ss_pred             cccCHHHHHHHHHHHCCCCeEEEeC---C------CcccHHHHHHHHHHHHHHHHHcCCCCCCEEEEECCCCHHHHHHHH
Confidence            3588999999999999999999875   3      479999999999999999999999999999999999999999999


Q ss_pred             HHHhCCCeEEecCCCCChhHHHHHHhcccceEEEEccchhhhhhccccccccCccEEEEecCCcHHHHHHHhhCCcceee
Q 006111          120 ACNALSLICVPLYDTLGPGAVNFILDHAEIDFVFVQDKKVKELLSPDCRSAQRLRVMVCFTSLTAEQKEMAVQTGIKPYS  199 (660)
Q Consensus       120 A~~~~G~~~vpl~~~~~~~~l~~~l~~~~~~~ii~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~  199 (660)
                      ||+++|++++|+++..+.+++..+++.+++++++++......+.. .....+....++...+...          ....+
T Consensus        86 a~~~~G~~~vpl~~~~~~~~~~~~l~~~~~~~ii~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~----------~~~~~  154 (542)
T PRK07786         86 AANMLGAIAVPVNFRLTPPEIAFLVSDCGAHVVVTEAALAPVATA-VRDIVPLLSTVVVAGGSSD----------DSVLG  154 (542)
T ss_pred             HHHHcCeEEEEcCccCCHHHHHHHHHhCCCcEEEEccchHHHHHH-hhhccCccceEEEecCCCc----------ccccC
Confidence            999999999999999999999999999999999998876554322 1222233444555443211          11234


Q ss_pred             HHHHHhcCccCCccCCCCCCCceEEEEecCCCCCCCceeeecchhHHHHhhhhhhhcccccCCC-CCCcEEEEecChhHH
Q 006111          200 WDEFLHLGKVNEMEILPPQPFNICTIMYTSGTSGDPKGVVLTHETIATFVSGVDLFLDQFEDKM-TVDDVYLSFLPLAHI  278 (660)
Q Consensus       200 ~~~~~~~~~~~~~~~~~~~~~~~~~i~~TSGTTG~pK~v~~th~~l~~~~~~~~~~~~~~~~~~-~~~~~~l~~~pl~~~  278 (660)
                      +.++...... .........+++++++|||||||.||+|.++|+++...+......+     ++ ..++++++..|++|.
T Consensus       155 ~~~~~~~~~~-~~~~~~~~~~~~a~i~~TSGTTG~PK~v~~s~~~l~~~~~~~~~~~-----~~~~~~~~~~~~~p~~~~  228 (542)
T PRK07786        155 YEDLLAEAGP-AHAPVDIPNDSPALIMYTSGTTGRPKGAVLTHANLTGQAMTCLRTN-----GADINSDVGFVGVPLFHI  228 (542)
T ss_pred             HHHHhhccCC-CCCCCCCCCCCeEEEEeCCCCCccchhhhhhHHHHHHHHHHHHHhc-----CCCCCCceEEEecchHHH
Confidence            5555443322 1222345567899999999999999999999999988887765555     44 567899999999999


Q ss_pred             HHHHHHHHHhhcCcEEEEecC---ChhhHHHHhhhhcCeEEEechHHHHHHHHHHHHHHHhhchHHHHHHHHHHHHHHHH
Q 006111          279 LDRVIEEYFFRRGASVGYYHG---DLNALRDDLMELKPTLLAGVPRVFEKIHEGIKKALEELRPLRRRIFDALYKYKLAW  355 (660)
Q Consensus       279 ~g~~~~l~~l~~G~~~v~~~~---~~~~~~~~i~~~~~t~~~~~p~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  355 (660)
                      +|+...+.++..|+++++.+.   ++..+++.|+++++|.++++|+++..+........                     
T Consensus       229 ~g~~~~~~~l~~G~~~v~~~~~~~~~~~~~~~i~~~~~t~~~~~P~~l~~l~~~~~~~~---------------------  287 (542)
T PRK07786        229 AGIGSMLPGLLLGAPTVIYPLGAFDPGQLLDVLEAEKVTGIFLVPAQWQAVCAEQQARP---------------------  287 (542)
T ss_pred             HHHHHHHHHHHccCEEEEccCCCcCHHHHHHHHHHcCCeEEEehHHHHHHHHhCcccCc---------------------
Confidence            998778888999999998652   89999999999999999999999998865321100                     


Q ss_pred             HhhCCCCCCcchhhhHHHHHHHHHHhCCcEeEEEEccCCCCHHHHHHHHHhc-CCceeeecCCCCCCCceecccCCC-cc
Q 006111          356 MNMGYKQREASPLADLLAFRKVKARLGGRLRLVISGGAPLSTEVEEFLRVTC-CAFLVQGYGLTETCGPTTVCFPDE-MC  433 (660)
Q Consensus       356 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lr~i~~~G~~l~~~~~~~~~~~~-~~~v~~~YG~tE~~~~~~~~~~~~-~~  433 (660)
                                               ...++|.+++||+++++++.+.+.+.+ +.++++.||+||++.+.+...... ..
T Consensus       288 -------------------------~~~~lr~i~~gg~~~~~~~~~~~~~~~~~~~l~~~YG~tE~~~~~~~~~~~~~~~  342 (542)
T PRK07786        288 -------------------------RDLALRVLSWGAAPASDTLLRQMAATFPEAQILAAFGQTEMSPVTCMLLGEDAIR  342 (542)
T ss_pred             -------------------------cCcceEEEEECCCCCCHHHHHHHHHHcCCCeEEeeecccccccceEecCcccccc
Confidence                                     002689999999999999999999988 789999999999997766543322 23


Q ss_pred             ccCccCCCccCeeEEeeecCCCCCCCCCCCCCceEEEccCCcccccCCCchhhhhcccCCccccCceEEECCCCcEEEEe
Q 006111          434 MVGTAGPVSVYSELRLEEVPEMGYSPLDDPPCGEVCVRGKTLFSGYYKNPDLTRESIIDGWFHTGDIGQILPNGVVKIID  513 (660)
Q Consensus       434 ~~~~~G~~~~~~~v~ivd~~~~~~~~~~~~~~Gei~v~g~~~~~gy~~~~~~~~~~~~~g~~~TGDl~~~~~~G~l~~~G  513 (660)
                      ..+++|.|++++.++|+| +++..  ++.++.|||+++|+.++.||+++++.+...|.+|||+|||+++++++|.+++.|
T Consensus       343 ~~~~~G~~~~~~~~~i~d-~~~~~--~~~g~~Gel~v~g~~~~~gy~~~~~~~~~~f~~~~~~TGDl~~~~~~g~~~i~G  419 (542)
T PRK07786        343 KLGSVGKVIPTVAARVVD-ENMND--VPVGEVGEIVYRAPTLMSGYWNNPEATAEAFAGGWFHSGDLVRQDEEGYVWVVD  419 (542)
T ss_pred             cCCCccccCCCceEEEEC-CCCCC--CcCCCceEEEEEChhhhhhhcCCHHHHHHHhhCCcccccceEEEcCCceEEEEe
Confidence            457899999999999999 66654  445689999999999999999999999999999999999999999999999999


Q ss_pred             ccCCeeEcCCCeeecchhHHHHHhcCcCcceEEEEecCCC---CeEEEEEEcChhhHHHHHHHCCCCCcHHHHhccHHHH
Q 006111          514 RKKNLIKISQGEYVALEYLENVYCVAPIIEDIWVYGDSLK---SMLVAVVVPCEEDTKKWAYSNGHAGSFLELCSLVQLQ  590 (660)
Q Consensus       514 R~~d~i~~~~G~~v~~~~iE~~l~~~p~V~~~~V~~~~~~---~~~~a~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  590 (660)
                      |.+|+|++ +|.+|++.+||+.|.+||.|.+|+|++.++.   +.+++++++..+..         .             
T Consensus       420 R~~d~i~~-~G~~v~~~eiE~~l~~~~~v~~~~v~~~~~~~~~~~~~~~v~~~~~~~---------~-------------  476 (542)
T PRK07786        420 RKKDMIIS-GGENIYCAEVENVLASHPDIVEVAVIGRADEKWGEVPVAVAAVRNDDA---------A-------------  476 (542)
T ss_pred             cccceEEe-CCEEECHHHHHHHHHhCCCccEEEEEeccCcccCceEEEEEEECCCCC---------C-------------
Confidence            99999997 8999999999999999999999999987644   47788888765320         0             


Q ss_pred             HHHHHHHHHHHHhCCCCCceeeeEEEEecCCCCCCCCccccccccchHHHHHHHHHHH
Q 006111          591 NYILSELKNAAERNKLRGFEHIKGVILDPRPFDMERDLVTATLKKKRNKLLIYYQVEI  648 (660)
Q Consensus       591 ~~~~~~l~~~~~~~~l~~~~~p~~i~~~~~~~~~~~~P~t~~GKv~R~~l~~~~~~~i  648 (660)
                       ...+++.++++ .+++.|++|..+.+++      .+|+|++||++|++|+++|.+..
T Consensus       477 -~~~~~l~~~l~-~~l~~~~~P~~i~~v~------~iP~t~~GKv~r~~L~~~~~~~~  526 (542)
T PRK07786        477 -LTLEDLAEFLT-DRLARYKHPKALEIVD------ALPRNPAGKVLKTELRERYGACV  526 (542)
T ss_pred             -CCHHHHHHHHH-hhccCCCCCCEEEEec------cCCCCCcccccHHHHHHHHHhhh
Confidence             00123444444 6799999999999874      46899999999999998887643

>TIGR02275 DHB_AMP_lig 2,3-dihydroxybenzoate-AMP ligase

Probab=100.00  E-value=8.1e-62  Score=535.98  Aligned_cols=494  Identities=18%  Similarity=0.171  Sum_probs=395.1

Q ss_pred             CCcHHHHHHHHHHhCCCCCceeeeccccCCCCCceEEeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEeCCchhHHHHHHH
Q 006111           41 LNTAWDIFSMSVQKYPGNRMLGWRPFVDGKFGPYVWKTYKEVYEEVLQIVSALRASGAEPGCRVGIYGANCPQWVEAMEA  120 (660)
Q Consensus        41 ~~ti~~~l~~~a~~~pd~~a~~~~~~~d~~~~~~~~~Ty~ql~~~v~~lA~~L~~~Gl~~gd~V~l~~~n~~e~~~~~lA  120 (660)
                      ..++.++|+++++++|+++|+++.   +      +++||.||.++++++|..|.+.|+++||+|+++++|++++++++||
T Consensus        22 ~~~l~~~~~~~a~~~p~~~a~~~~---~------~~~Ty~el~~~~~~~a~~L~~~g~~~g~~V~i~~~~~~~~~~~~la   92 (527)
T TIGR02275        22 DKPLTDILRDQAARYPDAIAIICG---N------RQWSYRELDQRADNLAAGLTKLGIGQGDTAVVQLPNIAEFYIVFFA   92 (527)
T ss_pred             CCcHHHHHHHHHHHCCCceEEEeC---C------ceecHHHHHHHHHHHHHHHHHcCCCCCCEEEEECCCcHHHHHHHHH
Confidence            457999999999999999999864   2      5899999999999999999999999999999999999999999999


Q ss_pred             HHhCCCeEEecCCCCChhHHHHHHhcccceEEEEccchhhh----hhccccccccCccEEEEecCCcHHHHHHHhhCCcc
Q 006111          121 CNALSLICVPLYDTLGPGAVNFILDHAEIDFVFVQDKKVKE----LLSPDCRSAQRLRVMVCFTSLTAEQKEMAVQTGIK  196 (660)
Q Consensus       121 ~~~~G~~~vpl~~~~~~~~l~~~l~~~~~~~ii~~~~~~~~----~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~  196 (660)
                      |+++|++++++++..+.+++..+++.+++++++++......    .........+....++.......            
T Consensus        93 ~~~~G~~~v~~~~~~~~~~~~~~l~~~~~~~li~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------------  160 (527)
T TIGR02275        93 LLKLGIAPVLALFSHRKSELTAYAQQIEPALYIIDRAHSLFDYDAFARQLQSKLPTLRNIIVAGQTRV------------  160 (527)
T ss_pred             HHHcCeEEeccccccCHHHHHHHHHhcCCcEEEEcCcccccchHHHHHHHHhhCCcceEEEEecCCCC------------
Confidence            99999999999999999999999999999999998754211    11111111122333333322100            


Q ss_pred             eeeHHHHHhcCccCCccCCCCCCCceEEEEecCCCCCCCceeeecchhHHHHhhhhhhhcccccCCCCCCcEEEEecChh
Q 006111          197 PYSWDEFLHLGKVNEMEILPPQPFNICTIMYTSGTSGDPKGVVLTHETIATFVSGVDLFLDQFEDKMTVDDVYLSFLPLA  276 (660)
Q Consensus       197 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~TSGTTG~pK~v~~th~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~pl~  276 (660)
                      ........... ..........++++++++|||||||.||+|.+||.++...+......+     .++.++++++.+|++
T Consensus       161 ~~~~~~~~~~~-~~~~~~~~~~~~~~a~i~~TSGTTG~PKgv~~s~~~~~~~~~~~~~~~-----~~~~~d~~l~~~P~~  234 (527)
T TIGR02275       161 EAELFLWLESP-AEPVKFPPTKSDEVAFFQLSGGSTGTPKLIPRTHNDYYYSVRRSVEIC-----WLTQQTRYLCALPAA  234 (527)
T ss_pred             cchhhHHhhCc-CccccCCCCCCCccEEEEeCCCCCCCCceeeeehHHHHHHHHHHHhhc-----CCCcCCEEEECCChH
Confidence            00011111111 111122345678999999999999999999999999998887766655     788899999999999


Q ss_pred             HHHHHHH--HHHHhhcCcEEEEecC-ChhhHHHHhhhhcCeEEEechHHHHHHHHHHHHHHHhhchHHHHHHHHHHHHHH
Q 006111          277 HILDRVI--EEYFFRRGASVGYYHG-DLNALRDDLMELKPTLLAGVPRVFEKIHEGIKKALEELRPLRRRIFDALYKYKL  353 (660)
Q Consensus       277 ~~~g~~~--~l~~l~~G~~~v~~~~-~~~~~~~~i~~~~~t~~~~~p~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~  353 (660)
                      |.+++..  .+.++..|+++++.+. ++..++..++++++|+++++|.+++.+.+......                   
T Consensus       235 h~~~~~~~~~~~~l~~G~~~v~~~~~~~~~~~~~i~~~~~t~~~~~p~~~~~l~~~~~~~~-------------------  295 (527)
T TIGR02275       235 HNYPLSSPGALGVFYAGGCVVLAPDPSPTDCFPLIERHKVTVTALVPPAVALWMQAASKSR-------------------  295 (527)
T ss_pred             hhhhhhHHHHHHHHhcCCeEEECCCCCHHHHHHHHHHhCCeEEEecHHHHHHHHhCccccC-------------------
Confidence            9998764  5677899999988765 89999999999999999999999988765322110                   


Q ss_pred             HHHhhCCCCCCcchhhhHHHHHHHHHHhCCcEeEEEEccCCCCHHHHHHHHHhcCCceeeecCCCCCCCceecccCCCcc
Q 006111          354 AWMNMGYKQREASPLADLLAFRKVKARLGGRLRLVISGGAPLSTEVEEFLRVTCCAFLVQGYGLTETCGPTTVCFPDEMC  433 (660)
Q Consensus       354 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lr~i~~~G~~l~~~~~~~~~~~~~~~v~~~YG~tE~~~~~~~~~~~~~~  433 (660)
                                        .+        .+++|.+++||+++++++.+.+.+.+|.++++.||+||++............
T Consensus       296 ------------------~~--------~~~lr~~~~gG~~l~~~~~~~~~~~~g~~~~~~YG~tE~~~~~~~~~~~~~~  349 (527)
T TIGR02275       296 ------------------YD--------LSSLKLLQVGGAKFSEAAARRVPAVFGCQLQQVFGMAEGLVNYTRLDDPAEI  349 (527)
T ss_pred             ------------------CC--------ccceEEEEEcCCCCCHHHHHHHHHHhCCeEEeeeccCccCccccCCCCcccc
Confidence                              00        1489999999999999999999998999999999999976544322222223


Q ss_pred             ccCccCCCc-cCeeEEeeecCCCCCCCCCCCCCceEEEccCCcccccCCCchhhhhcc-cCCccccCceEEECCCCcEEE
Q 006111          434 MVGTAGPVS-VYSELRLEEVPEMGYSPLDDPPCGEVCVRGKTLFSGYYKNPDLTRESI-IDGWFHTGDIGQILPNGVVKI  511 (660)
Q Consensus       434 ~~~~~G~~~-~~~~v~ivd~~~~~~~~~~~~~~Gei~v~g~~~~~gy~~~~~~~~~~~-~~g~~~TGDl~~~~~~G~l~~  511 (660)
                      ..+++|.|+ ++++++++| +++..  ...|+.|||+++|+.++.||+++++.+...| .+|||+|||+|+++++|++++
T Consensus       350 ~~~~~G~~~~~~~~v~i~d-~~g~~--~~~g~~Gei~v~g~~~~~gY~~~~~~~~~~~~~dg~~~TGDl~~~~~~g~l~~  426 (527)
T TIGR02275       350 IFTTQGRPMSPDDEVRVVD-DHGNP--VAPGETGMLLTRGPYTFRGYYKAPEHNAAAFDAEGFYYTGDLVRLTPEGYIVV  426 (527)
T ss_pred             ccccCCCCCCCCceEEEEC-CCCCC--CCCCCceEEEecCCccchhhcCChhHhHhhcCcCCCEEcCceEEEcCCccEEE
Confidence            346889999 488999998 66653  4456899999999999999999999998888 789999999999999999999


Q ss_pred             EeccCCeeEcCCCeeecchhHHHHHhcCcCcceEEEEecCCC---CeEEEEEEcChhhHHHHHHHCCCCCcHHHHhccHH
Q 006111          512 IDRKKNLIKISQGEYVALEYLENVYCVAPIIEDIWVYGDSLK---SMLVAVVVPCEEDTKKWAYSNGHAGSFLELCSLVQ  588 (660)
Q Consensus       512 ~GR~~d~i~~~~G~~v~~~~iE~~l~~~p~V~~~~V~~~~~~---~~~~a~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~  588 (660)
                      .||.+|+|++ +|++|+|.+||++|.+||+|.+|+|++.++.   +.++++|++.++..                 .   
T Consensus       427 ~gR~~d~i~~-~G~~v~~~eiE~~l~~~~~v~~~~v~~~~~~~~~~~~~a~vv~~~~~~-----------------~---  485 (527)
T TIGR02275       427 VGRAKDQINR-GGEKIAAEEIENLLLAHPAVHDAALVSMPDELLGEKSCAFIVVRDPAL-----------------K---  485 (527)
T ss_pred             Eecccceeec-CCEEECHHHHHHHHHhCCCceEEEEEecCCcccccEEEEEEEECCCCC-----------------C---
Confidence            9999999996 8999999999999999999999999998765   47888888765420                 1   


Q ss_pred             HHHHHHHHHHHHHHhCCCCCceeeeEEEEecCCCCCCCCccccccccchHHHH
Q 006111          589 LQNYILSELKNAAERNKLRGFEHIKGVILDPRPFDMERDLVTATLKKKRNKLL  641 (660)
Q Consensus       589 ~~~~~~~~l~~~~~~~~l~~~~~p~~i~~~~~~~~~~~~P~t~~GKv~R~~l~  641 (660)
                           .++|++++++..++.|++|..+.+++      .+|+|++||++|++|+
T Consensus       486 -----~~~l~~~l~~~~l~~~~~P~~i~~v~------~iP~t~sGKv~r~~L~  527 (527)
T TIGR02275       486 -----AAQLRRFLRERGLAEYKLPDRVEFID------SLPLTAVGKIDKKALR  527 (527)
T ss_pred             -----HHHHHHHHHhCCCccccCCCEEEEec------cCCCCCccceeHHhcC
Confidence                 13455555444699999999999874      4689999999999874

Proteins in this family belong to the AMP-binding enzyme family (pfam00501). Members activate 2,3-dihydroxybenzoate (DHB) by ligation of AMP from ATP with the release of pyrophosphate; many are involved in synthesis of siderophores such as enterobactin, vibriobactin, vulnibactin, etc. The most closely related proteine believed to differ in function activates salicylate rather than DHB.

>PRK07470 acyl-CoA synthetase; Validated

Probab=100.00  E-value=8.3e-62  Score=536.49  Aligned_cols=501  Identities=23%  Similarity=0.286  Sum_probs=400.0

Q ss_pred             CCCcHHHHHHHHHHhCCCCCceeeeccccCCCCCceEEeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEeCCchhHHHHHH
Q 006111           40 DLNTAWDIFSMSVQKYPGNRMLGWRPFVDGKFGPYVWKTYKEVYEEVLQIVSALRASGAEPGCRVGIYGANCPQWVEAME  119 (660)
Q Consensus        40 ~~~ti~~~l~~~a~~~pd~~a~~~~~~~d~~~~~~~~~Ty~ql~~~v~~lA~~L~~~Gl~~gd~V~l~~~n~~e~~~~~l  119 (660)
                      ...|+.++|...++++|+++|+.+.   +      +++||.||.+++.++|..|.+.|+++||+|+++++|+++++++++
T Consensus         5 ~~~~~~~~~~~~a~~~p~~~a~~~~---~------~~~Ty~el~~~~~~~a~~L~~~g~~~g~~v~i~~~~~~~~~~~~l   75 (528)
T PRK07470          5 RVMNLAHFLRQAARRFPDRIALVWG---D------RSWTWREIDARVDALAAALAARGVRKGDRILVHSRNCNQMFESMF   75 (528)
T ss_pred             cCCCHHHHHHHHHHHCCCceEEEEC---C------ccccHHHHHHHHHHHHHHHHHhCCCCCCEEEEEcCCCHHHHHHHH
Confidence            4578999999999999999999865   3      479999999999999999999999999999999999999999999


Q ss_pred             HHHhCCCeEEecCCCCChhHHHHHHhcccceEEEEccchhhhhhccccccccCccEEEEecCCcHHHHHHHhhCCcceee
Q 006111          120 ACNALSLICVPLYDTLGPGAVNFILDHAEIDFVFVQDKKVKELLSPDCRSAQRLRVMVCFTSLTAEQKEMAVQTGIKPYS  199 (660)
Q Consensus       120 A~~~~G~~~vpl~~~~~~~~l~~~l~~~~~~~ii~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~  199 (660)
                      ||+++|++++|+++..+.+++..+++.++++.++++.......... .........++.+.....            ..+
T Consensus        76 A~~~~G~~~v~l~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~------------~~~  142 (528)
T PRK07470         76 AAFRLGAVWVPTNFRQTPDEVAYLAEASGARAMICHADFPEHAAAV-RAASPDLTHVVAIGGARA------------GLD  142 (528)
T ss_pred             HHHhCCeEEEecCccCCHHHHHHHHHhcCceEEEEcchhHHHHHHH-HhhCCcCceEEEeCCCcc------------ccc
Confidence            9999999999999999999999999999999999998754433211 111122334444433210            124


Q ss_pred             HHHHHhcCccCCccCCCCCCCceEEEEecCCCCCCCceeeecchhHHHHhhhhhhhcccccCCCCCCcEEEEecChhHHH
Q 006111          200 WDEFLHLGKVNEMEILPPQPFNICTIMYTSGTSGDPKGVVLTHETIATFVSGVDLFLDQFEDKMTVDDVYLSFLPLAHIL  279 (660)
Q Consensus       200 ~~~~~~~~~~~~~~~~~~~~~~~~~i~~TSGTTG~pK~v~~th~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~pl~~~~  279 (660)
                      +.++...............++++++|+|||||||.||+|.++|+++...+......+   ..+....|+++..+|++|.+
T Consensus       143 ~~~~~~~~~~~~~~~~~~~~~~~a~i~~TSGTTG~PK~v~~s~~~l~~~~~~~~~~~---~~~~~~~d~~l~~~p~~~~~  219 (528)
T PRK07470        143 YEALVARHLGARVANAAVDHDDPCWFFFTSGTTGRPKAAVLTHGQMAFVITNHLADL---MPGTTEQDASLVVAPLSHGA  219 (528)
T ss_pred             HHHHHhcCCCCCCCcccCCCCCeEEEEeCCCCCCCCcEEEEehhhHHHHHHHHHHHh---ccCCCcccEEEEeccchhHH
Confidence            555544332222223345678999999999999999999999999976554322211   11456789999999999999


Q ss_pred             HHHHHHHHhhcCcEEEEecC---ChhhHHHHhhhhcCeEEEechHHHHHHHHHHHHHHHhhchHHHHHHHHHHHHHHHHH
Q 006111          280 DRVIEEYFFRRGASVGYYHG---DLNALRDDLMELKPTLLAGVPRVFEKIHEGIKKALEELRPLRRRIFDALYKYKLAWM  356 (660)
Q Consensus       280 g~~~~l~~l~~G~~~v~~~~---~~~~~~~~i~~~~~t~~~~~p~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  356 (660)
                      ++...+ .++.|++.++.+.   ++..+++.|+++++|++.++|++++.+.+....                        
T Consensus       220 ~~~~~~-~~~~g~~~~~~~~~~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~------------------------  274 (528)
T PRK07470        220 GIHQLC-QVARGAATVLLPSERFDPAEVWALVERHRVTNLFTVPTILKMLVEHPAV------------------------  274 (528)
T ss_pred             HHHHHH-HHhcCceEEEecccCcCHHHHHHHHHhcCCeEEechHHHHHHHHhCcCc------------------------
Confidence            886544 5677777776653   889999999999999999999999987642110                        


Q ss_pred             hhCCCCCCcchhhhHHHHHHHHHHhCCcEeEEEEccCCCCHHHHHHHHHhcCCceeeecCCCCCCCceecccCC------
Q 006111          357 NMGYKQREASPLADLLAFRKVKARLGGRLRLVISGGAPLSTEVEEFLRVTCCAFLVQGYGLTETCGPTTVCFPD------  430 (660)
Q Consensus       357 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~lr~i~~~G~~l~~~~~~~~~~~~~~~v~~~YG~tE~~~~~~~~~~~------  430 (660)
                                   +..        ..+++|.+++||+++++...+.+.+.+|.++++.||+||+++.++.....      
T Consensus       275 -------------~~~--------~~~~lr~~~~gG~~l~~~~~~~~~~~~g~~~~~~YG~TE~~~~~~~~~~~~~~~~~  333 (528)
T PRK07470        275 -------------DRY--------DHSSLRYVIYAGAPMYRADQKRALAKLGKVLVQYFGLGEVTGNITVLPPALHDAED  333 (528)
T ss_pred             -------------CCC--------CCcceEEEEEcCCCCCHHHHHHHHHHhCcHHHHhCCCcccCCceeecchhhccccc
Confidence                         000        11489999999999999999999888899999999999998876654321      


Q ss_pred             -CccccCccCCCccCeeEEeeecCCCCCCCCCCCCCceEEEccCCcccccCCCchhhhhcccCCccccCceEEECCCCcE
Q 006111          431 -EMCMVGTAGPVSVYSELRLEEVPEMGYSPLDDPPCGEVCVRGKTLFSGYYKNPDLTRESIIDGWFHTGDIGQILPNGVV  509 (660)
Q Consensus       431 -~~~~~~~~G~~~~~~~v~ivd~~~~~~~~~~~~~~Gei~v~g~~~~~gy~~~~~~~~~~~~~g~~~TGDl~~~~~~G~l  509 (660)
                       .....+++|.|+++++++++| +++..  ++.|+.|||+++|+.++.||+++++.+...|.+|||+|||+|+++++|++
T Consensus       334 ~~~~~~~~~G~~~~g~~~~i~d-~~~~~--~~~g~~Gel~i~~~~~~~gy~~~~~~~~~~~~~~~~~TGDl~~~~~~g~l  410 (528)
T PRK07470        334 GPDARIGTCGFERTGMEVQIQD-DEGRE--LPPGETGEICVIGPAVFAGYYNNPEANAKAFRDGWFRTGDLGHLDARGFL  410 (528)
T ss_pred             cccceeeccCcccCCcEEEEEC-CCCCC--CCCCCceEEEEeCCccchhhcCCHHHHHhhhcCCcEecceeEEEccCCeE
Confidence             122347899999999999999 66654  45568999999999999999999999998899999999999999999999


Q ss_pred             EEEeccCCeeEcCCCeeecchhHHHHHhcCcCcceEEEEecCCC---CeEEEEEEcChhhHHHHHHHCCCCCcHHHHhcc
Q 006111          510 KIIDRKKNLIKISQGEYVALEYLENVYCVAPIIEDIWVYGDSLK---SMLVAVVVPCEEDTKKWAYSNGHAGSFLELCSL  586 (660)
Q Consensus       510 ~~~GR~~d~i~~~~G~~v~~~~iE~~l~~~p~V~~~~V~~~~~~---~~~~a~v~~~~~~~~~~~~~~~~~~~~~~~~~~  586 (660)
                      ++.||.+|+|++ +|++|+|.+||..|.++|.|.+|+|++.+++   +.++++++..++..        .        +.
T Consensus       411 ~~~GR~dd~i~~-~G~~v~~~~IE~~l~~~~~v~~~~v~~~~~~~~~~~~~~~~~~~~~~~--------~--------~~  473 (528)
T PRK07470        411 YITGRASDMYIS-GGSNVYPREIEEKLLTHPAVSEVAVLGVPDPVWGEVGVAVCVARDGAP--------V--------DE  473 (528)
T ss_pred             EEeCCccceEEe-CCEEECHHHHHHHHHhCCCceEEEEEeccCcccCceeEEEEEECCCCC--------C--------CH
Confidence            999999999997 8999999999999999999999999997754   36778888765420        0        11


Q ss_pred             HHHHHHHHHHHHHHHHhCCCCCceeeeEEEEecCCCCCCCCccccccccchHHHHHHHHH
Q 006111          587 VQLQNYILSELKNAAERNKLRGFEHIKGVILDPRPFDMERDLVTATLKKKRNKLLIYYQV  646 (660)
Q Consensus       587 ~~~~~~~~~~l~~~~~~~~l~~~~~p~~i~~~~~~~~~~~~P~t~~GKv~R~~l~~~~~~  646 (660)
                              +.++++++ ..||.|.+|..++++      +.+|+|++||++|+.|++++++
T Consensus       474 --------~~~~~~l~-~~l~~~~~P~~~~~~------~~iP~t~~GKi~r~~l~~~~~~  518 (528)
T PRK07470        474 --------AELLAWLD-GKVARYKLPKRFFFW------DALPKSGYGKITKKMVREELEE  518 (528)
T ss_pred             --------HHHHHHHH-HhhhcCCCCcEEEEe------ccCCCCCcccccHHHHHHHHHh
Confidence                    23334443 678999999998886      4468999999999999988865

>PRK08043 bifunctional acyl-[acyl carrier protein] synthetase/2-acylglycerophosphoethanolamine acyltransferase; Validated

Probab=100.00  E-value=6e-62  Score=554.11  Aligned_cols=489  Identities=20%  Similarity=0.258  Sum_probs=380.1

Q ss_pred             CCcHHHHHHHHHHhCCC-CCceeeeccccCCCCCceEEeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEeCCchhHHHHHH
Q 006111           41 LNTAWDIFSMSVQKYPG-NRMLGWRPFVDGKFGPYVWKTYKEVYEEVLQIVSALRASGAEPGCRVGIYGANCPQWVEAME  119 (660)
Q Consensus        41 ~~ti~~~l~~~a~~~pd-~~a~~~~~~~d~~~~~~~~~Ty~ql~~~v~~lA~~L~~~Gl~~gd~V~l~~~n~~e~~~~~l  119 (660)
                      ..|+.+.|...++++|+ ++|+...   +     ++++||+||.++++++|++|.+. +++||+|+++++|++++++++|
T Consensus       203 ~~t~~~~l~~~~~~~p~~~~a~~~~---~-----~~~~Ty~el~~~~~~lA~~L~~~-~~~gd~Val~~~n~~e~~~~~l  273 (718)
T PRK08043        203 RETLYEALLSAQYRYGAGKPCIEDV---N-----FTPDSYRKLLKKTLFVGRILEKY-SVEGERIGLMLPNATISAAVIF  273 (718)
T ss_pred             CCCHHHHHHHHHHHhCCCCcceEcC---C-----CCcccHHHHHHHHHHHHHHHHHh-cCCCceEEEEcCCcHHHHHHHH
Confidence            46899999999999998 5777532   1     25799999999999999999887 5999999999999999999999


Q ss_pred             HHHhCCCeEEecCCCCChhHHHHHHhcccceEEEEccchhhhhhc-cccccccCccEEEEecCCcHHHHHHHhhCCccee
Q 006111          120 ACNALSLICVPLYDTLGPGAVNFILDHAEIDFVFVQDKKVKELLS-PDCRSAQRLRVMVCFTSLTAEQKEMAVQTGIKPY  198 (660)
Q Consensus       120 A~~~~G~~~vpl~~~~~~~~l~~~l~~~~~~~ii~~~~~~~~~~~-~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~  198 (660)
                      ||+++|++++|+++.++.+++.+++++++++++|++.+....... .......... ++.+++...            ..
T Consensus       274 A~~~~G~v~vpl~~~~~~~~l~~~l~~s~~~~vi~~~~~~~~~~~~~~~~~~~~~~-~i~~~~~~~------------~~  340 (718)
T PRK08043        274 GASLRRRIPAMMNYTAGVKGLTSAITAAEIKTIFTSRQFLDKGKLWHLPEQLTQVR-WVYLEDLKD------------DV  340 (718)
T ss_pred             HHHHcCCcccccccCcCHHHHHHHHHHcCCcEEEEcHHHHhhccCCChhhhhcccc-EEEhhhhhh------------hc
Confidence            999999999999999999999999999999999998775442110 0111111111 222221100            00


Q ss_pred             eHHHH----HhcCccCCccCCCCCCCceEEEEecCCCCCCCceeeecchhHHHHhhhhhhhcccccCCCCCCcEEEEecC
Q 006111          199 SWDEF----LHLGKVNEMEILPPQPFNICTIMYTSGTSGDPKGVVLTHETIATFVSGVDLFLDQFEDKMTVDDVYLSFLP  274 (660)
Q Consensus       199 ~~~~~----~~~~~~~~~~~~~~~~~~~~~i~~TSGTTG~pK~v~~th~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~p  274 (660)
                      .+...    .... ..........++|+++++|||||||.||+|++||+++.+.+......+     ++..+|++++.+|
T Consensus       341 ~~~~~~~~~~~~~-~~~~~~~~~~~~d~a~i~~TSGTTG~PKgv~~sh~~l~~~~~~~~~~~-----~~~~~d~~l~~~P  414 (718)
T PRK08043        341 TTADKLWIFAHLL-MPRLAQVKQQPEDAALILFTSGSEGHPKGVVHSHKSLLANVEQIKTIA-----DFTPNDRFMSALP  414 (718)
T ss_pred             chhHHHHHHHHHh-CCccccCCCCCCCeEEEEECCCCCCCCCEEEEcHHHHHHHHHHHHHhh-----CCCccCeEEEcCc
Confidence            01000    0000 001111234679999999999999999999999999998887766655     7889999999999


Q ss_pred             hhHHHHHHH-HHHHhhcCcEEEEecC--ChhhHHHHhhhhcCeEEEechHHHHHHHHHHHHHHHhhchHHHHHHHHHHHH
Q 006111          275 LAHILDRVI-EEYFFRRGASVGYYHG--DLNALRDDLMELKPTLLAGVPRVFEKIHEGIKKALEELRPLRRRIFDALYKY  351 (660)
Q Consensus       275 l~~~~g~~~-~l~~l~~G~~~v~~~~--~~~~~~~~i~~~~~t~~~~~p~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~  351 (660)
                      ++|.+++.. ++.++..|+++++.+.  ++..+++.+.++++|+++++|+++..+.+..                     
T Consensus       415 l~h~~g~~~~~~~~l~~G~~vv~~~~~~~~~~~~~~i~~~~vt~~~~~p~~~~~l~~~~---------------------  473 (718)
T PRK08043        415 LFHSFGLTVGLFTPLLTGAEVFLYPSPLHYRIVPELVYDRNCTVLFGTSTFLGNYARFA---------------------  473 (718)
T ss_pred             chhhhhhHHHHHHHHHcCCEEEEeCCcccHHHHHHHHHhcCCeEEEchHHHHHHhhhhc---------------------
Confidence            999999876 6677999999998864  6678889999999999999999887654310                     


Q ss_pred             HHHHHhhCCCCCCcchhhhHHHHHHHHHHhCCcEeEEEEccCCCCHHHHHHHHHhcCCceeeecCCCCCCCceecccCCC
Q 006111          352 KLAWMNMGYKQREASPLADLLAFRKVKARLGGRLRLVISGGAPLSTEVEEFLRVTCCAFLVQGYGLTETCGPTTVCFPDE  431 (660)
Q Consensus       352 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lr~i~~~G~~l~~~~~~~~~~~~~~~v~~~YG~tE~~~~~~~~~~~~  431 (660)
                                        +..++        ++||.+++||+++++++.+.+++.+|++++++||+||++..++......
T Consensus       474 ------------------~~~~~--------~~lr~i~~gg~~l~~~~~~~~~~~~g~~l~~~YG~TE~~~~~~~~~~~~  527 (718)
T PRK08043        474 ------------------NPYDF--------ARLRYVVAGAEKLQESTKQLWQDKFGLRILEGYGVTECAPVVSINVPMA  527 (718)
T ss_pred             ------------------Ccccc--------cceEEEEEeCccCCHHHHHHHHHHcCCCeecccCcccccceEEecCCcc
Confidence                              00111        4899999999999999999999989999999999999987766544322


Q ss_pred             ccccCccCCCccCeeEEeeecCCCCCCCCCCCCCceEEEccCCcccccCCC--chh-------hhhc-ccCCccccCceE
Q 006111          432 MCMVGTAGPVSVYSELRLEEVPEMGYSPLDDPPCGEVCVRGKTLFSGYYKN--PDL-------TRES-IIDGWFHTGDIG  501 (660)
Q Consensus       432 ~~~~~~~G~~~~~~~v~ivd~~~~~~~~~~~~~~Gei~v~g~~~~~gy~~~--~~~-------~~~~-~~~g~~~TGDl~  501 (660)
                       ...+++|+|+++++++++| +++.      ++.|||+++|++++.||+++  ++.       +... +.+|||+|||+|
T Consensus       528 -~~~~svG~p~pg~~~~i~d-~~~~------~~~Gel~v~g~~v~~GY~~~e~~~~~~~~~~~~~~~~~~~gw~~TGDlg  599 (718)
T PRK08043        528 -AKPGTVGRILPGMDARLLS-VPGI------EQGGRLQLKGPNIMNGYLRVEKPGVLEVPTAENARGEMERGWYDTGDIV  599 (718)
T ss_pred             -cCCCCCCCcCCCCeeEEec-CCCC------CCceEEEEecCCccccccCCCCcccccccccccccccccCCeEecCCEE
Confidence             3458999999999999998 4432      34699999999999999983  332       2222 257999999999


Q ss_pred             EECCCCcEEEEeccCCeeEcCCCeeecchhHHHHHhcCcCcceEEEEecCCC---CeEEEEEEcChhhHHHHHHHCCCCC
Q 006111          502 QILPNGVVKIIDRKKNLIKISQGEYVALEYLENVYCVAPIIEDIWVYGDSLK---SMLVAVVVPCEEDTKKWAYSNGHAG  578 (660)
Q Consensus       502 ~~~~~G~l~~~GR~~d~i~~~~G~~v~~~~iE~~l~~~p~V~~~~V~~~~~~---~~~~a~v~~~~~~~~~~~~~~~~~~  578 (660)
                      ++|+||++++.||.+|+|++ +|++|+|.+||+++.+|+.+.+++|++.+++   +.+++++.. ...            
T Consensus       600 ~~d~dG~l~i~GR~~d~I~~-~G~~V~p~eIE~~l~~~~~~~~~avv~~~~~~~ge~~v~~~~~-~~~------------  665 (718)
T PRK08043        600 RFDEQGFVQIQGRAKRFAKI-AGEMVSLEMVEQLALGVSPDKQHATAIKSDASKGEALVLFTTD-SEL------------  665 (718)
T ss_pred             EEcCCCcEEEEecCCCeeEe-CcEEcCHHHHHHHHHhCCccceEEEEEccCCCCCceEEEEEcC-ccc------------
Confidence            99999999999999999997 7999999999999999998888888886654   356655531 110            


Q ss_pred             cHHHHhccHHHHHHHHHHHHHHHHhCCCCCceeeeEEEEecCCCCCCCCccccccccchHHHHHHHHH
Q 006111          579 SFLELCSLVQLQNYILSELKNAAERNKLRGFEHIKGVILDPRPFDMERDLVTATLKKKRNKLLIYYQV  646 (660)
Q Consensus       579 ~~~~~~~~~~~~~~~~~~l~~~~~~~~l~~~~~p~~i~~~~~~~~~~~~P~t~~GKv~R~~l~~~~~~  646 (660)
                            +        .+++++++++..|+.|++|+.+.++++      +|+|++||++|++|++++.+
T Consensus       666 ------~--------~~~l~~~~~~~~l~~~~vP~~i~~v~~------lP~t~~GKi~r~~L~~~~~~  713 (718)
T PRK08043        666 ------T--------REKLQQYAREHGVPELAVPRDIRYLKQ------LPLLGSGKPDFVTLKSMVDE  713 (718)
T ss_pred             ------C--------HHHHHHHHHhcCCCcccCCceEEEecc------cCcCCCCCcCHHHHHHHHhc
Confidence                  1        123555555445999999999999744      58999999999999987654

>PRK06087 short chain acyl-CoA synthetase; Reviewed

Probab=100.00  E-value=3.1e-61  Score=534.06  Aligned_cols=506  Identities=21%  Similarity=0.257  Sum_probs=405.1

Q ss_pred             CcHHHHHHHHHHhCCCCCceeeeccccCCCCCceEEeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEeCCchhHHHHHHHH
Q 006111           42 NTAWDIFSMSVQKYPGNRMLGWRPFVDGKFGPYVWKTYKEVYEEVLQIVSALRASGAEPGCRVGIYGANCPQWVEAMEAC  121 (660)
Q Consensus        42 ~ti~~~l~~~a~~~pd~~a~~~~~~~d~~~~~~~~~Ty~ql~~~v~~lA~~L~~~Gl~~gd~V~l~~~n~~e~~~~~lA~  121 (660)
                      .++.++|+..++++||++|+++.   ++     +++||+||+++++++|++|++.|+++||+|+++++|+++++++++||
T Consensus        23 ~~l~~~~~~~~~~~pd~~a~~~~---~~-----~~~Ty~~l~~~v~~la~~l~~~G~~~gd~V~i~~~n~~~~~~~~lA~   94 (547)
T PRK06087         23 ASLADYWQQTARAMPDKIAVVDN---HG-----ASYTYSALDHAASRLANWLLAKGIEPGDRVAFQLPGWCEFTIIYLAC   94 (547)
T ss_pred             CCHHHHHHHHHHHCCCceEEEcC---CC-----CEEEHHHHHHHHHHHHHHHHHcCCCCCCEEEEECCCCHHHHHHHHHH
Confidence            57999999999999999999865   43     47999999999999999999999999999999999999999999999


Q ss_pred             HhCCCeEEecCCCCChhHHHHHHhcccceEEEEccchh-----hhhhccccccccCccEEEEecCCcHHHHHHHhhCCcc
Q 006111          122 NALSLICVPLYDTLGPGAVNFILDHAEIDFVFVQDKKV-----KELLSPDCRSAQRLRVMVCFTSLTAEQKEMAVQTGIK  196 (660)
Q Consensus       122 ~~~G~~~vpl~~~~~~~~l~~~l~~~~~~~ii~~~~~~-----~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~  196 (660)
                      +++|++++|+++..+.+++..+++.++++++++++...     ..+.. ..........++..+.....         ..
T Consensus        95 ~~~G~~~v~l~~~~~~~~l~~~l~~~~~~~l~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~---------~~  164 (547)
T PRK06087         95 LKVGAVSVPLLPSWREAELVWVLNKCQAKMFFAPTLFKQTRPVDLILP-LQNQLPQLQQIVGVDKLAPA---------TS  164 (547)
T ss_pred             HHcCcEEeccchhcCHHHHHHHHHhcCCeEEEEecccccccHHHHHHH-HHhhCCCCcEEEEeCCcCCC---------cC
Confidence            99999999999999999999999999999999976421     11111 11122334445555432210         01


Q ss_pred             eeeHHHHHhcCccCCccCCCCCCCceEEEEecCCCCCCCceeeecchhHHHHhhhhhhhcccccCCCCCCcEEEEecChh
Q 006111          197 PYSWDEFLHLGKVNEMEILPPQPFNICTIMYTSGTSGDPKGVVLTHETIATFVSGVDLFLDQFEDKMTVDDVYLSFLPLA  276 (660)
Q Consensus       197 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~TSGTTG~pK~v~~th~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~pl~  276 (660)
                      ..++.++....... ........+++++|+|||||||.||+|.+||.++......+...+     ++..++++++.+|++
T Consensus       165 ~~~~~~~~~~~~~~-~~~~~~~~~d~a~i~~TSGTTG~PK~v~~t~~~l~~~~~~~~~~~-----~~~~~d~~l~~~pl~  238 (547)
T PRK06087        165 SLSLSQIIADYEPL-TTAITTHGDELAAVLFTSGTEGLPKGVMLTHNNILASERAYCARL-----NLTWQDVFMMPAPLG  238 (547)
T ss_pred             ccCHHHHhccCCcc-cCCCCCCCCCeEEEEeCCCCCCCCcEEEEecHHHHHHHHHHHHhc-----CCCCCCeEEEecchH
Confidence            12344444332111 122345678999999999999999999999999988877766555     788999999999999


Q ss_pred             HHHHHHH-HHHHhhcCcEEEEecC-ChhhHHHHhhhhcCeEEEechHHHHHHHHHHHHHHHhhchHHHHHHHHHHHHHHH
Q 006111          277 HILDRVI-EEYFFRRGASVGYYHG-DLNALRDDLMELKPTLLAGVPRVFEKIHEGIKKALEELRPLRRRIFDALYKYKLA  354 (660)
Q Consensus       277 ~~~g~~~-~l~~l~~G~~~v~~~~-~~~~~~~~i~~~~~t~~~~~p~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~  354 (660)
                      |.+++.. .+.+++.|+++++.+. ++..+++.|.++++|+++++|..+..++......                     
T Consensus       239 h~~g~~~~~~~~l~~g~~~~~~~~~~~~~~~~~i~~~~~t~~~~~~~~~~~~l~~~~~~---------------------  297 (547)
T PRK06087        239 HATGFLHGVTAPFLIGARSVLLDIFTPDACLALLEQQRCTCMLGATPFIYDLLNLLEKQ---------------------  297 (547)
T ss_pred             HHHHHHHHHHHHHhcCCEEEecCCCCHHHHHHHHHHcCCCEEeccHHHHHHHHhccccC---------------------
Confidence            9999765 5667889999998876 8999999999999999999887776665421110                     


Q ss_pred             HHhhCCCCCCcchhhhHHHHHHHHHHhCCcEeEEEEccCCCCHHHHHHHHHhcCCceeeecCCCCCCCceecccCCC-cc
Q 006111          355 WMNMGYKQREASPLADLLAFRKVKARLGGRLRLVISGGAPLSTEVEEFLRVTCCAFLVQGYGLTETCGPTTVCFPDE-MC  433 (660)
Q Consensus       355 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lr~i~~~G~~l~~~~~~~~~~~~~~~v~~~YG~tE~~~~~~~~~~~~-~~  433 (660)
                                      .        ..++++|.+++||+++++++.+.+.+. |+++++.||+||++...+...... ..
T Consensus       298 ----------------~--------~~~~~lr~i~~gG~~~~~~~~~~~~~~-~~~l~~~YG~TE~~~~~~~~~~~~~~~  352 (547)
T PRK06087        298 ----------------P--------ADLSALRFFLCGGTTIPKKVARECQQR-GIKLLSVYGSTESSPHAVVNLDDPLSR  352 (547)
T ss_pred             ----------------C--------CCCCCeEEEEEcCCCCCHHHHHHHHHc-CCcEEEEecccccCCccccCCCcchhh
Confidence                            0        011489999999999999999888765 999999999999998766544332 22


Q ss_pred             ccCccCCCccCeeEEeeecCCCCCCCCCCCCCceEEEccCCcccccCCCchhhhhcc-cCCccccCceEEECCCCcEEEE
Q 006111          434 MVGTAGPVSVYSELRLEEVPEMGYSPLDDPPCGEVCVRGKTLFSGYYKNPDLTRESI-IDGWFHTGDIGQILPNGVVKII  512 (660)
Q Consensus       434 ~~~~~G~~~~~~~v~ivd~~~~~~~~~~~~~~Gei~v~g~~~~~gy~~~~~~~~~~~-~~g~~~TGDl~~~~~~G~l~~~  512 (660)
                      ..+++|.|++++.++++| +++..  ++.|+.|||+++|+.++.||+++++.+...| .+|||+|||++++|++|.+++.
T Consensus       353 ~~~~~G~~~~~~~~~i~d-~~~~~--~~~g~~Gel~v~g~~~~~gy~~~~~~~~~~~~~~g~~~TGDl~~~~~~g~l~i~  429 (547)
T PRK06087        353 FMHTDGYAAAGVEIKVVD-EARKT--LPPGCEGEEASRGPNVFMGYLDEPELTARALDEEGWYYSGDLCRMDEAGYIKIT  429 (547)
T ss_pred             cCCcCCccCCCceEEEEc-CCCCC--CcCCCcceEEEecccccccccCCHHHHHHHhCCCCCcCcCceEEECCCCCEEEE
Confidence            336789999999999999 66654  4566899999999999999999999988888 6899999999999999999999


Q ss_pred             eccCCeeEcCCCeeecchhHHHHHhcCcCcceEEEEecCCC---CeEEEEEEcChhhHHHHHHHCCCCCcHHHHhccHHH
Q 006111          513 DRKKNLIKISQGEYVALEYLENVYCVAPIIEDIWVYGDSLK---SMLVAVVVPCEEDTKKWAYSNGHAGSFLELCSLVQL  589 (660)
Q Consensus       513 GR~~d~i~~~~G~~v~~~~iE~~l~~~p~V~~~~V~~~~~~---~~~~a~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  589 (660)
                      ||.+|+|+. +|.+|+|.+||+.|.++|+|.+++|++.+++   +.+++++++.....         ..      .    
T Consensus       430 GR~~d~i~~-~G~~v~p~~iE~~l~~~~~v~~~~v~~~~~~~~g~~~~~~v~~~~~~~---------~~------~----  489 (547)
T PRK06087        430 GRKKDIIVR-GGENISSREVEDILLQHPKIHDACVVAMPDERLGERSCAYVVLKAPHH---------SL------T----  489 (547)
T ss_pred             ecchhhhhc-CCEEECHHHHHHHHHhCCCeeEEEEEecCCCCcCceEEEEEEECCCCC---------CC------C----
Confidence            999999996 8999999999999999999999999997644   47888888765210         00      0    


Q ss_pred             HHHHHHHHHHHHHhCCCCCceeeeEEEEecCCCCCCCCccccccccchHHHHHHHHHHHHH
Q 006111          590 QNYILSELKNAAERNKLRGFEHIKGVILDPRPFDMERDLVTATLKKKRNKLLIYYQVEIDQ  650 (660)
Q Consensus       590 ~~~~~~~l~~~~~~~~l~~~~~p~~i~~~~~~~~~~~~P~t~~GKv~R~~l~~~~~~~i~~  650 (660)
                          .+++.+++++..++.|++|..|.+++      .||+|.+||++|++|++++.+++..
T Consensus       490 ----~~~~~~~~~~~~l~~~~~P~~i~~v~------~iP~t~sGK~~r~~l~~~~~~~~~~  540 (547)
T PRK06087        490 ----LEEVVAFFSRKRVAKYKYPEHIVVID------KLPRTASGKIQKFLLRKDIMRRLTQ  540 (547)
T ss_pred             ----HHHHHHHHHhccccccCCCeEEEEec------cCCCCCCCcCcHHHHHHHHHHHhhh
Confidence                12333443346899999999999974      4689999999999999998887643

>PLN02330 4-coumarate--CoA ligase-like 1

Probab=100.00  E-value=2.5e-61  Score=534.13  Aligned_cols=517  Identities=22%  Similarity=0.253  Sum_probs=404.8

Q ss_pred             CceeccccCCCCCCCCCCCCcHHHHHHHHHHhCCCCCceeeeccccCCCCCceEEeHHHHHHHHHHHHHHHHHcCCCCCC
Q 006111           23 PVYRNLLASNGFPSVDSDLNTAWDIFSMSVQKYPGNRMLGWRPFVDGKFGPYVWKTYKEVYEEVLQIVSALRASGAEPGC  102 (660)
Q Consensus        23 ~~~~~~~~~~~~~~~~~~~~ti~~~l~~~a~~~pd~~a~~~~~~~d~~~~~~~~~Ty~ql~~~v~~lA~~L~~~Gl~~gd  102 (660)
                      .+||+......    .+...|+.+.|.++++++|+++|+.+.   .+.    +.+||.||.+++.++|..|.+.|+++||
T Consensus        13 ~~~~~~~~~~~----~~~~~~~~~~l~~~a~~~p~~~a~~~~---~~~----~~~Ty~~l~~~~~~la~~L~~~g~~~g~   81 (546)
T PLN02330         13 HIFRSRYPSVP----VPDKLTLPDFVLQDAELYADKVAFVEA---VTG----KAVTYGEVVRDTRRFAKALRSLGLRKGQ   81 (546)
T ss_pred             eeeccCCCCCC----CCCCCcHHHHHhhhhhcCCCccEEEec---CCC----CcccHHHHHHHHHHHHHHHHHhCCCCCC
Confidence            45665543331    234688999999999999999999764   211    4799999999999999999999999999


Q ss_pred             EEEEEeCCchhHHHHHHHHHhCCCeEEecCCCCChhHHHHHHhcccceEEEEccchhhhhhccccccccCccEEEEecCC
Q 006111          103 RVGIYGANCPQWVEAMEACNALSLICVPLYDTLGPGAVNFILDHAEIDFVFVQDKKVKELLSPDCRSAQRLRVMVCFTSL  182 (660)
Q Consensus       103 ~V~l~~~n~~e~~~~~lA~~~~G~~~vpl~~~~~~~~l~~~l~~~~~~~ii~~~~~~~~~~~~~~~~~~~~~~i~~~~~~  182 (660)
                      +|+++++|++++++++|||+++|++++|+++..+.+++..+++.++++++++++.....+....      . .++.++..
T Consensus        82 ~V~i~~~~~~~~~~~~lA~~~~G~~~vpl~~~~~~~~l~~~l~~~~~~~~i~~~~~~~~~~~~~------~-~~i~~~~~  154 (546)
T PLN02330         82 VVVVVLPNVAEYGIVALGIMAAGGVFSGANPTALESEIKKQAEAAGAKLIVTNDTNYGKVKGLG------L-PVIVLGEE  154 (546)
T ss_pred             EEEEECCCchHHHHHHHHHHHhCcEeccCCccCCHHHHHHHHHhcCCeEEEEccchhhhHhhcC------C-cEEEecCC
Confidence            9999999999999999999999999999999999999999999999999999988766553211      1 12333221


Q ss_pred             cHHHHHHHhhCCcceeeHHHHHhcCccCC--ccCCCCCCCceEEEEecCCCCCCCceeeecchhHHHHhhhhhhhccccc
Q 006111          183 TAEQKEMAVQTGIKPYSWDEFLHLGKVNE--MEILPPQPFNICTIMYTSGTSGDPKGVVLTHETIATFVSGVDLFLDQFE  260 (660)
Q Consensus       183 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~i~~TSGTTG~pK~v~~th~~l~~~~~~~~~~~~~~~  260 (660)
                      .          ......|.++........  .......++++++++|||||||.||+|.++|+++...+.......   .
T Consensus       155 ~----------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~il~TSGTTG~PKgv~~s~~~l~~~~~~~~~~~---~  221 (546)
T PLN02330        155 K----------IEGAVNWKELLEAADRAGDTSDNEEILQTDLCALPFSSGTTGISKGVMLTHRNLVANLCSSLFSV---G  221 (546)
T ss_pred             C----------CCCcccHHHHHhhccccCcccccccCCcccEEEEEeCCCCcCCCcEEEEehHHHHHHHHHHhhcc---C
Confidence            1          011234666654432211  112334578999999999999999999999999987654321111   1


Q ss_pred             CCCCCCcEEEEecChhHHHHHHH-HHHHhhcCcEEEEecC-ChhhHHHHhhhhcCeEEEechHHHHHHHHHHHHHHHhhc
Q 006111          261 DKMTVDDVYLSFLPLAHILDRVI-EEYFFRRGASVGYYHG-DLNALRDDLMELKPTLLAGVPRVFEKIHEGIKKALEELR  338 (660)
Q Consensus       261 ~~~~~~~~~l~~~pl~~~~g~~~-~l~~l~~G~~~v~~~~-~~~~~~~~i~~~~~t~~~~~p~~~~~l~~~~~~~~~~~~  338 (660)
                      ......++.+.++|++|.+++.. ++.++..|+++++.+. ++..+++.++++++|++.++|+++..+.....       
T Consensus       222 ~~~~~~~~~~~~~p~~h~~g~~~~~~~~l~~g~~~~~~~~~~~~~~~~~i~~~~vt~~~~~P~~~~~l~~~~~-------  294 (546)
T PLN02330        222 PEMIGQVVTLGLIPFFHIYGITGICCATLRNKGKVVVMSRFELRTFLNALITQEVSFAPIVPPIILNLVKNPI-------  294 (546)
T ss_pred             ccccCceEEEEecChHHHHHHHHHHHHHhhcCCEEEEecccCHHHHHHHHHHcCCeeeecCCHHHHHHHhCcc-------
Confidence            12234578999999999998875 5677899999988876 99999999999999999999999988764211       


Q ss_pred             hHHHHHHHHHHHHHHHHHhhCCCCCCcchhhhHHHHHHHHHHhCCcEeEEEEccCCCCHHHHHHHHHhc-CCceeeecCC
Q 006111          339 PLRRRIFDALYKYKLAWMNMGYKQREASPLADLLAFRKVKARLGGRLRLVISGGAPLSTEVEEFLRVTC-CAFLVQGYGL  417 (660)
Q Consensus       339 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lr~i~~~G~~l~~~~~~~~~~~~-~~~v~~~YG~  417 (660)
                                                    ...+++..      .++|.+++||+++++++.+++.+.+ ++++++.||+
T Consensus       295 ------------------------------~~~~~~~~------~~l~~i~~~g~~l~~~~~~~~~~~~~~~~~~~~YG~  338 (546)
T PLN02330        295 ------------------------------VEEFDLSK------LKLQAIMTAAAPLAPELLTAFEAKFPGVQVQEAYGL  338 (546)
T ss_pred             ------------------------------ccccccch------heeeeEEEcCCcCCHHHHHHHHHHcCCCeEEecccc
Confidence                                          00111110      1589999999999999999999988 8999999999


Q ss_pred             CCCCCceecccCCC----ccccCccCCCccCeeEEeeecCCCCCCCCCCCCCceEEEccCCcccccCCCchhhhhcc-cC
Q 006111          418 TETCGPTTVCFPDE----MCMVGTAGPVSVYSELRLEEVPEMGYSPLDDPPCGEVCVRGKTLFSGYYKNPDLTRESI-ID  492 (660)
Q Consensus       418 tE~~~~~~~~~~~~----~~~~~~~G~~~~~~~v~ivd~~~~~~~~~~~~~~Gei~v~g~~~~~gy~~~~~~~~~~~-~~  492 (660)
                      ||++.+........    ....+++|.|+++++++++| ++++ .+++.|+.|||+|+|+.++.||++++..+.+.+ .+
T Consensus       339 tE~~~~~~~~~~~~~~~~~~~~~~vG~~~~~~~v~i~d-~~~~-~~~p~g~~Gel~v~g~~~~~gy~~~~~~~~~~~~~~  416 (546)
T PLN02330        339 TEHSCITLTHGDPEKGHGIAKKNSVGFILPNLEVKFID-PDTG-RSLPKNTPGELCVRSQCVMQGYYNNKEETDRTIDED  416 (546)
T ss_pred             cccccceecCCCccccccccccCccccccCCcEEEEEe-CCCC-ccCCCCCceEEEEecchhhhhhccCccchhhhccCC
Confidence            99986654332111    12346899999999999998 4433 345566899999999999999999999888877 68


Q ss_pred             CccccCceEEECCCCcEEEEeccCCeeEcCCCeeecchhHHHHHhcCcCcceEEEEecCCC---CeEEEEEEcChhhHHH
Q 006111          493 GWFHTGDIGQILPNGVVKIIDRKKNLIKISQGEYVALEYLENVYCVAPIIEDIWVYGDSLK---SMLVAVVVPCEEDTKK  569 (660)
Q Consensus       493 g~~~TGDl~~~~~~G~l~~~GR~~d~i~~~~G~~v~~~~iE~~l~~~p~V~~~~V~~~~~~---~~~~a~v~~~~~~~~~  569 (660)
                      |||+|||+|++++||.+++.||.+|+|++ +|++|+|.+||++|.++|.|.+|+|++.++.   +.++++|++.++..  
T Consensus       417 g~~~TGD~~~~~~dG~l~~~GR~~d~i~~-~G~~v~~~~iE~~l~~~~~v~~~~v~~~~~~~~g~~~~a~v~~~~~~~--  493 (546)
T PLN02330        417 GWLHTGDIGYIDDDGDIFIVDRIKELIKY-KGFQVAPAELEAILLTHPSVEDAAVVPLPDEEAGEIPAACVVINPKAK--  493 (546)
T ss_pred             CceecccEEEEeCCCcEEEEechHHhhhc-CCEEECHHHHHHHHHhCCchheEEEEeccccccCceeEEEEEECCCCC--
Confidence            99999999999999999999999999997 7999999999999999999999999997643   47888888876420  


Q ss_pred             HHHHCCCCCcHHHHhccHHHHHHHHHHHHHHHHhCCCCCceeeeEEEEecCCCCCCCCccccccccchHHHHHHHHHH
Q 006111          570 WAYSNGHAGSFLELCSLVQLQNYILSELKNAAERNKLRGFEHIKGVILDPRPFDMERDLVTATLKKKRNKLLIYYQVE  647 (660)
Q Consensus       570 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~l~~~~~p~~i~~~~~~~~~~~~P~t~~GKv~R~~l~~~~~~~  647 (660)
                              .      .        .++|.++++ ..|+.|++|+.+.+++      .+|+|++||++|++|++++...
T Consensus       494 --------~------~--------~~~l~~~~~-~~l~~~~~p~~~~~v~------~iP~t~~GK~~r~~L~~~~~~~  542 (546)
T PLN02330        494 --------E------S--------EEDILNFVA-ANVAHYKKVRVVQFVD------SIPKSLSGKIMRRLLKEKMLSI  542 (546)
T ss_pred             --------C------C--------HHHHHHHHH-HhcccccCceEEEEec------cCCCCCCcceeHHHHHHHHHhh
Confidence                    0      1        123344443 6799999999888874      4589999999999999988653

>PRK06145 acyl-CoA synthetase; Validated

Probab=100.00  E-value=4.6e-61  Score=526.79  Aligned_cols=489  Identities=22%  Similarity=0.299  Sum_probs=397.3

Q ss_pred             CCcHHHHHHHHHHhCCCCCceeeeccccCCCCCceEEeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEeCCchhHHHHHHH
Q 006111           41 LNTAWDIFSMSVQKYPGNRMLGWRPFVDGKFGPYVWKTYKEVYEEVLQIVSALRASGAEPGCRVGIYGANCPQWVEAMEA  120 (660)
Q Consensus        41 ~~ti~~~l~~~a~~~pd~~a~~~~~~~d~~~~~~~~~Ty~ql~~~v~~lA~~L~~~Gl~~gd~V~l~~~n~~e~~~~~lA  120 (660)
                      |.++.++|.++++++|+++|+++.   +      +.+||.||.+++.++|.+|.+.|+++|++|+++++|++++++++||
T Consensus         1 ~~~~~~~~~~~~~~~~~~~a~~~~---~------~~~ty~el~~~v~~~a~~L~~~g~~~~~~v~i~~~~~~~~~~~~la   71 (497)
T PRK06145          1 MFNLSASIAFHARRTPDRAALVYR---D------QEISYAEFHQRILQAAGMLHARGIGQGDVVALLMKNSAAFLELAFA   71 (497)
T ss_pred             CccHHHHHHHHHHHCCCceEEEEC---C------cceeHHHHHHHHHHHHHHHHHcCCCCCCEEEEECCCCHHHHHHHHH
Confidence            578899999999999999999875   3      4799999999999999999999999999999999999999999999


Q ss_pred             HHhCCCeEEecCCCCChhHHHHHHhcccceEEEEccchhhhhhccccccccCccEEEEecCCcHHHHHHHhhCCcceeeH
Q 006111          121 CNALSLICVPLYDTLGPGAVNFILDHAEIDFVFVQDKKVKELLSPDCRSAQRLRVMVCFTSLTAEQKEMAVQTGIKPYSW  200 (660)
Q Consensus       121 ~~~~G~~~vpl~~~~~~~~l~~~l~~~~~~~ii~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~  200 (660)
                      |+++|++++|+++..+.+++..+++.+++++++++.+.......      .  ...+.++....             ..+
T Consensus        72 ~~~~G~~~v~l~~~~~~~~~~~~l~~~~~~~~i~~~~~~~~~~~------~--~~~~~~~~~~~-------------~~~  130 (497)
T PRK06145         72 ASYLGAVFLPINYRLAADEVAYILGDAGAKLLLVDEEFDAIVAL------E--TPKIVIDAAAQ-------------ADS  130 (497)
T ss_pred             HHhcCcEEEecccccCHHHHHHHHHhcCCcEEEEccchhhhhhc------c--cceEEecCccc-------------chh
Confidence            99999999999999999999999999999999998765433210      0  11222221110             001


Q ss_pred             HHHHhcCccCCccCCCCCCCceEEEEecCCCCCCCceeeecchhHHHHhhhhhhhcccccCCCCCCcEEEEecChhHHHH
Q 006111          201 DEFLHLGKVNEMEILPPQPFNICTIMYTSGTSGDPKGVVLTHETIATFVSGVDLFLDQFEDKMTVDDVYLSFLPLAHILD  280 (660)
Q Consensus       201 ~~~~~~~~~~~~~~~~~~~~~~~~i~~TSGTTG~pK~v~~th~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~pl~~~~g  280 (660)
                      ..+.. ............++++++++|||||||.||+|.++|.++...+......+     ++..+++++...|++|.++
T Consensus       131 ~~~~~-~~~~~~~~~~~~~~~~a~i~~TSGTTG~PK~v~~s~~~~~~~~~~~~~~~-----~~~~~~~~~~~~p~~~~~~  204 (497)
T PRK06145        131 RRLAQ-GGLEIPPQAAVAPTDLVRLMYTSGTTDRPKGVMHSYGNLHWKSIDHVIAL-----GLTASERLLVVGPLYHVGA  204 (497)
T ss_pred             HHHhc-cCCCCCCCCCCCccceEEEEeCCCCCCCCcEEEEecHHHHHHHHHHHHhh-----CCCCCcEEEEecCchhHhH
Confidence            11111 10111112245678999999999999999999999999987665544444     6888999999999999998


Q ss_pred             HHH-HHHHhhcCcEEEEecC-ChhhHHHHhhhhcCeEEEechHHHHHHHHHHHHHHHhhchHHHHHHHHHHHHHHHHHhh
Q 006111          281 RVI-EEYFFRRGASVGYYHG-DLNALRDDLMELKPTLLAGVPRVFEKIHEGIKKALEELRPLRRRIFDALYKYKLAWMNM  358 (660)
Q Consensus       281 ~~~-~l~~l~~G~~~v~~~~-~~~~~~~~i~~~~~t~~~~~p~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  358 (660)
                      +.. .+.+++.|+++++.+. ++..+++.++++++|++.++|+++..++.....                          
T Consensus       205 ~~~~~~~~l~~g~~~~~~~~~~~~~~~~~i~~~~~t~~~~~P~~~~~ll~~~~~--------------------------  258 (497)
T PRK06145        205 FDLPGIAVLWVGGTLRIHREFDPEAVLAAIERHRLTCAWMAPVMLSRVLTVPDR--------------------------  258 (497)
T ss_pred             HHHHHHHHHhccCEEEECCcCCHHHHHHHHHHhCCeEEEehHHHHHHHHcCCCc--------------------------
Confidence            875 4667899999988776 999999999999999999999999888642110                          


Q ss_pred             CCCCCCcchhhhHHHHHHHHHHhCCcEeEEEEccCCCCHHHHHHHHHhc-CCceeeecCCCCCCCceecccCCC-ccccC
Q 006111          359 GYKQREASPLADLLAFRKVKARLGGRLRLVISGGAPLSTEVEEFLRVTC-CAFLVQGYGLTETCGPTTVCFPDE-MCMVG  436 (660)
Q Consensus       359 ~~~~~~~~~~~~~~~~~~~~~~~~~~lr~i~~~G~~l~~~~~~~~~~~~-~~~v~~~YG~tE~~~~~~~~~~~~-~~~~~  436 (660)
                                 ...++        +++|.+++||+++++.+.+.+.+.+ +.++++.||+||++..++....+. ....+
T Consensus       259 -----------~~~~~--------~~l~~~~~gG~~~~~~~~~~~~~~~~~~~v~~~YG~tE~~~~~~~~~~~~~~~~~~  319 (497)
T PRK06145        259 -----------DRFDL--------DSLAWCIGGGEKTPESRIRDFTRVFTRARYIDAYGLTETCSGDTLMEAGREIEKIG  319 (497)
T ss_pred             -----------ccccc--------ccceEEEecCCCCCHHHHHHHHHHcCCCceEEeecCcccCCcceeccCccccccCC
Confidence                       00111        3889999999999999999999888 678999999999998766544332 23447


Q ss_pred             ccCCCccCeeEEeeecCCCCCCCCCCCCCceEEEccCCcccccCCCchhhhhcccCCccccCceEEECCCCcEEEEeccC
Q 006111          437 TAGPVSVYSELRLEEVPEMGYSPLDDPPCGEVCVRGKTLFSGYYKNPDLTRESIIDGWFHTGDIGQILPNGVVKIIDRKK  516 (660)
Q Consensus       437 ~~G~~~~~~~v~ivd~~~~~~~~~~~~~~Gei~v~g~~~~~gy~~~~~~~~~~~~~g~~~TGDl~~~~~~G~l~~~GR~~  516 (660)
                      ++|.|++++++++++ +++..  ++.++.|||+++|+.++.||++++..+.+.|.++||+|||+|+++.+|.++++||.+
T Consensus       320 ~~G~~~~~~~~~i~~-~~~~~--~~~~~~Gel~v~g~~~~~Gy~~~~~~~~~~~~~~~~~TGDl~~~~~~g~l~~~GR~~  396 (497)
T PRK06145        320 STGRALAHVEIRIAD-GAGRW--LPPNMKGEICMRGPKVTKGYWKDPEKTAEAFYGDWFRSGDVGYLDEEGFLYLTDRKK  396 (497)
T ss_pred             CcccCCCCceEEEEC-CCCCC--CCCCCceEEEEECcchhhhhcCChHHHHHHHhCCCeeccceEEEcCCCcEEEecccc
Confidence            899999999999999 66654  445689999999999999999999999999999999999999999999999999999


Q ss_pred             CeeEcCCCeeecchhHHHHHhcCcCcceEEEEecCCC---CeEEEEEEcChhhHHHHHHHCCCCCcHHHHhccHHHHHHH
Q 006111          517 NLIKISQGEYVALEYLENVYCVAPIIEDIWVYGDSLK---SMLVAVVVPCEEDTKKWAYSNGHAGSFLELCSLVQLQNYI  593 (660)
Q Consensus       517 d~i~~~~G~~v~~~~iE~~l~~~p~V~~~~V~~~~~~---~~~~a~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  593 (660)
                      |+|++ +|++++|.+||+.|.++|+|.+++|++.++.   +.+++++++.+...        .        .        
T Consensus       397 ~~i~~-~G~~v~~~~IE~~l~~~~~v~~~~v~~~~~~~~~~~~~~~v~~~~~~~--------~--------~--------  451 (497)
T PRK06145        397 DMIIS-GGENIASSEVERVIYELPEVAEAAVIGVHDDRWGERITAVVVLNPGAT--------L--------T--------  451 (497)
T ss_pred             ceEEe-CCeEECHHHHHHHHHhCCCeeEEEEEecCCCccCceEEEEEEECCCCC--------C--------C--------
Confidence            99996 8999999999999999999999999997654   47888888875320        0        1        


Q ss_pred             HHHHHHHHHhCCCCCceeeeEEEEecCCCCCCCCccccccccchHHHHHHHH
Q 006111          594 LSELKNAAERNKLRGFEHIKGVILDPRPFDMERDLVTATLKKKRNKLLIYYQ  645 (660)
Q Consensus       594 ~~~l~~~~~~~~l~~~~~p~~i~~~~~~~~~~~~P~t~~GKv~R~~l~~~~~  645 (660)
                      .++|.++++ .+|++|++|..+.++      +.+|+|++||++|++|+++++
T Consensus       452 ~~~l~~~~~-~~l~~~~~p~~i~~v------~~iP~t~~GKi~r~~l~~~~~  496 (497)
T PRK06145        452 LEALDRHCR-QRLASFKVPRQLKVR------DELPRNPSGKVLKRVLRDELN  496 (497)
T ss_pred             HHHHHHHHH-HhhhcCCCCCEEEEe------ccCCCCCcccccHHHHHHHhc
Confidence            123444444 678899999998887      446899999999999998764

>PRK12583 acyl-CoA synthetase; Provisional

Probab=100.00  E-value=7.7e-61  Score=532.79  Aligned_cols=509  Identities=26%  Similarity=0.343  Sum_probs=405.0

Q ss_pred             CCCCCcHHHHHHHHHHhCCCCCceeeeccccCCCCCceEEeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEeCCchhHHHH
Q 006111           38 DSDLNTAWDIFSMSVQKYPGNRMLGWRPFVDGKFGPYVWKTYKEVYEEVLQIVSALRASGAEPGCRVGIYGANCPQWVEA  117 (660)
Q Consensus        38 ~~~~~ti~~~l~~~a~~~pd~~a~~~~~~~d~~~~~~~~~Ty~ql~~~v~~lA~~L~~~Gl~~gd~V~l~~~n~~e~~~~  117 (660)
                      +....++.++|.+.++++|+++|+++.   +..    +.+||.||.+++.++|.+|.+.|+++||+|+++++|+++++++
T Consensus        14 ~~~~~~l~~~l~~~~~~~p~~~a~~~~---~~~----~~~Ty~~l~~~~~~~a~~L~~~gi~~g~~V~i~~~~~~~~~~~   86 (558)
T PRK12583         14 PLLTQTIGDAFDATVARFPDREALVVR---HQA----LRYTWRQLADAVDRLARGLLALGVQPGDRVGIWAPNCAEWLLT   86 (558)
T ss_pred             CcccCcHHHHHHHHHHHCCCCeEEEec---CCC----cEecHHHHHHHHHHHHHHHHHhCCCCCCEEEEECCCChHHHHH
Confidence            344568999999999999999999875   332    5799999999999999999999999999999999999999999


Q ss_pred             HHHHHhCCCeEEecCCCCChhHHHHHHhcccceEEEEccchhh-----hhhccc------------cccccCccEEEEec
Q 006111          118 MEACNALSLICVPLYDTLGPGAVNFILDHAEIDFVFVQDKKVK-----ELLSPD------------CRSAQRLRVMVCFT  180 (660)
Q Consensus       118 ~lA~~~~G~~~vpl~~~~~~~~l~~~l~~~~~~~ii~~~~~~~-----~~~~~~------------~~~~~~~~~i~~~~  180 (660)
                      +|||+++|++++|+++.++.+++..+++.++++++|+++....     .+....            ....+.+..++..+
T Consensus        87 ~~a~~~~G~~~v~l~~~~~~~~~~~~l~~~~~~~ii~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  166 (558)
T PRK12583         87 QFATARIGAILVNINPAYRASELEYALGQSGVRWVICADAFKTSDYHAMLQELLPGLAEGQPGALACERLPELRGVVSLA  166 (558)
T ss_pred             HHHHHhhCCEEEecCCCCCHHHHHHHHHhcCCcEEEEeccccccchhHHHHHHhhhhccccccccccccCCcceEEEEec
Confidence            9999999999999999999999999999999999999764321     110000            00111222233332


Q ss_pred             CCcHHHHHHHhhCCcceeeHHHHHhcCccC-----CccCCCCCCCceEEEEecCCCCCCCceeeecchhHHHHhhhhhhh
Q 006111          181 SLTAEQKEMAVQTGIKPYSWDEFLHLGKVN-----EMEILPPQPFNICTIMYTSGTSGDPKGVVLTHETIATFVSGVDLF  255 (660)
Q Consensus       181 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~i~~TSGTTG~pK~v~~th~~l~~~~~~~~~~  255 (660)
                      ....          .....|.++.......     ........++++++++|||||||.||+|.++|+++.+.+......
T Consensus       167 ~~~~----------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~i~~TSGsTG~PK~v~~s~~~l~~~~~~~~~~  236 (558)
T PRK12583        167 PAPP----------PGFLAWHELQARGETVSREALAERQASLDRDDPINIQYTSGTTGFPKGATLSHHNILNNGYFVAES  236 (558)
T ss_pred             CCCC----------ccccchHhhhhcccccccccccccccccCCCCcEEEEECCCCCCCCceEEeeHHHHHHHHHHHHHH
Confidence            2111          1122344443322110     111223467889999999999999999999999998888877666


Q ss_pred             cccccCCCCCCcEEEEecChhHHHHHHH-HHHHhhcCcEEEEecC--ChhhHHHHhhhhcCeEEEechHHHHHHHHHHHH
Q 006111          256 LDQFEDKMTVDDVYLSFLPLAHILDRVI-EEYFFRRGASVGYYHG--DLNALRDDLMELKPTLLAGVPRVFEKIHEGIKK  332 (660)
Q Consensus       256 ~~~~~~~~~~~~~~l~~~pl~~~~g~~~-~l~~l~~G~~~v~~~~--~~~~~~~~i~~~~~t~~~~~p~~~~~l~~~~~~  332 (660)
                      +     ++..+|++++.+|++|.+|... .+.+++.|+++++...  ++..+++.+.++++|+++++|+++..+......
T Consensus       237 ~-----~~~~~d~~~~~~p~~~~~g~~~~~~~~l~~g~~v~~~~~~~~~~~~~~~i~~~~~t~l~~~P~~~~~l~~~~~~  311 (558)
T PRK12583        237 L-----GLTEHDRLCVPVPLYHCFGMVLANLGCMTVGACLVYPNEAFDPLATLQAVEEERCTALYGVPTMFIAELDHPQR  311 (558)
T ss_pred             h-----CCCCCCeEEEecCchhhhhHHHHHHHHHhcCceEEeecCCCCHHHHHHHHHHcCCeEEeccHHHHHHHHccccc
Confidence            6     7888999999999999999876 5667889999887653  889999999999999999999998776532110


Q ss_pred             HHHhhchHHHHHHHHHHHHHHHHHhhCCCCCCcchhhhHHHHHHHHHHhCCcEeEEEEccCCCCHHHHHHHHHhcC-Cce
Q 006111          333 ALEELRPLRRRIFDALYKYKLAWMNMGYKQREASPLADLLAFRKVKARLGGRLRLVISGGAPLSTEVEEFLRVTCC-AFL  411 (660)
Q Consensus       333 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lr~i~~~G~~l~~~~~~~~~~~~~-~~v  411 (660)
                                                           ...++        +++|.+++||+++++++.+++.+.++ ..+
T Consensus       312 -------------------------------------~~~~~--------~~lr~i~~~G~~~~~~~~~~~~~~~~~~~i  346 (558)
T PRK12583        312 -------------------------------------GNFDL--------SSLRTGIMAGAPCPIEVMRRVMDEMHMAEV  346 (558)
T ss_pred             -------------------------------------cCCCc--------hhheEEEecCCCCCHHHHHHHHHHcCCcce
Confidence                                                 00111        38999999999999999999988886 479


Q ss_pred             eeecCCCCCCCceecccCCC--ccccCccCCCccCeeEEeeecCCCCCCCCCCCCCceEEEccCCcccccCCCchhhhhc
Q 006111          412 VQGYGLTETCGPTTVCFPDE--MCMVGTAGPVSVYSELRLEEVPEMGYSPLDDPPCGEVCVRGKTLFSGYYKNPDLTRES  489 (660)
Q Consensus       412 ~~~YG~tE~~~~~~~~~~~~--~~~~~~~G~~~~~~~v~ivd~~~~~~~~~~~~~~Gei~v~g~~~~~gy~~~~~~~~~~  489 (660)
                      ++.||+||++.+++......  .....++|.|++++.++++| +++.  +++.|+.|||+++|+.++.||++++..+...
T Consensus       347 ~~~YG~tE~~~~~~~~~~~~~~~~~~~~vG~p~~~~~~~i~d-~~~~--~~~~g~~Gel~v~g~~~~~gy~~~~~~~~~~  423 (558)
T PRK12583        347 QIAYGMTETSPVSLQTTAADDLERRVETVGRTQPHLEVKVVD-PDGA--TVPRGEIGELCTRGYSVMKGYWNNPEATAES  423 (558)
T ss_pred             eccccccccccceeccCcccccccccCCCCccCCCCeEEEEC-CCCC--CCCCCCeeEEEEEeCccchhhcCChHHHHhh
Confidence            99999999998876654322  23347899999999999999 6643  4556689999999999999999999999888


Q ss_pred             c-cCCccccCceEEECCCCcEEEEeccCCeeEcCCCeeecchhHHHHHhcCcCcceEEEEecCCC---CeEEEEEEcChh
Q 006111          490 I-IDGWFHTGDIGQILPNGVVKIIDRKKNLIKISQGEYVALEYLENVYCVAPIIEDIWVYGDSLK---SMLVAVVVPCEE  565 (660)
Q Consensus       490 ~-~~g~~~TGDl~~~~~~G~l~~~GR~~d~i~~~~G~~v~~~~iE~~l~~~p~V~~~~V~~~~~~---~~~~a~v~~~~~  565 (660)
                      | .+|||+|||+|+++++|++++.||.+|+|++ +|.+|+|.+||+.|.+||+|.+|+|++.++.   +.+++++++.++
T Consensus       424 ~~~~~~~~TGDl~~~~~dg~l~i~GR~~~~i~~-~G~~v~~~~IE~~l~~~~~v~~~~v~~~~~~~~~~~~~~~v~~~~~  502 (558)
T PRK12583        424 IDEDGWMHTGDLATMDEQGYVRIVGRSKDMIIR-GGENIYPREIEEFLFTHPAVADVQVFGVPDEKYGEEIVAWVRLHPG  502 (558)
T ss_pred             cCCCCCeeccceEEECCCccEEEEecccceeEE-CCEEeCHHHHHHHHHhCCCeeEEEEEeeecCCCCcEEEEEEEECCC
Confidence            8 8999999999999999999999999999996 8999999999999999999999999997654   478888887654


Q ss_pred             hHHHHHHHCCCCCcHHHHhccHHHHHHHHHHHHHHHHhCCCCCceeeeEEEEecCCCCCCCCccccccccchHHHHHHHH
Q 006111          566 DTKKWAYSNGHAGSFLELCSLVQLQNYILSELKNAAERNKLRGFEHIKGVILDPRPFDMERDLVTATLKKKRNKLLIYYQ  645 (660)
Q Consensus       566 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~l~~~~~p~~i~~~~~~~~~~~~P~t~~GKv~R~~l~~~~~  645 (660)
                      ..        .        .        .++++++++ .+||.|++|..+++++      .+|+|++||++|++|++++.
T Consensus       503 ~~--------~--------~--------~~~i~~~~~-~~L~~~~~P~~i~~v~------~lP~t~sGK~~r~~L~~~~~  551 (558)
T PRK12583        503 HA--------A--------S--------EEELREFCK-ARIAHFKVPRYFRFVD------EFPMTVTGKVQKFRMREISI  551 (558)
T ss_pred             CC--------C--------C--------HHHHHHHHH-hhcccCcCCcEEEEec------cCCCCCCCCccHHHHHHHHH
Confidence            20        0        0        123444444 6899999999999874      46899999999999999876


Q ss_pred             HHH
Q 006111          646 VEI  648 (660)
Q Consensus       646 ~~i  648 (660)
                      +++
T Consensus       552 ~~~  554 (558)
T PRK12583        552 EEL  554 (558)
T ss_pred             hhc
Confidence            654

>PRK07514 malonyl-CoA synthase; Validated

Probab=100.00  E-value=1.2e-60  Score=524.69  Aligned_cols=495  Identities=24%  Similarity=0.316  Sum_probs=400.4

Q ss_pred             CCcHHHHHHHHHHhCCCCCceeeeccccCCCCCceEEeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEeCCchhHHHHHHH
Q 006111           41 LNTAWDIFSMSVQKYPGNRMLGWRPFVDGKFGPYVWKTYKEVYEEVLQIVSALRASGAEPGCRVGIYGANCPQWVEAMEA  120 (660)
Q Consensus        41 ~~ti~~~l~~~a~~~pd~~a~~~~~~~d~~~~~~~~~Ty~ql~~~v~~lA~~L~~~Gl~~gd~V~l~~~n~~e~~~~~lA  120 (660)
                      .+++.+++..++ .+|+++|+...   ++     +.+||.||.++++++|.+|.+.|+++||+|+++++|+++++++++|
T Consensus         2 ~~~l~~~~~~~~-~~~~~~a~~~~---~~-----~~~Ty~eL~~~~~~la~~L~~~g~~~gd~v~i~~~~~~e~~v~~la   72 (504)
T PRK07514          2 NNNLFDALRAAF-ADRDAPFIETP---DG-----LRYTYGDLDAASARLANLLVALGVKPGDRVAVQVEKSPEALALYLA   72 (504)
T ss_pred             CccHHHHHHHHh-hCCCCeEEEeC---CC-----CEEcHHHHHHHHHHHHHHHHHcCCCCCCEEEEECCCCHHHHHHHHH
Confidence            468999999999 99999999764   44     5899999999999999999999999999999999999999999999


Q ss_pred             HHhCCCeEEecCCCCChhHHHHHHhcccceEEEEccchhhhhhccccccccCccEEEEecCCcHHHHHHHhhCCcceeeH
Q 006111          121 CNALSLICVPLYDTLGPGAVNFILDHAEIDFVFVQDKKVKELLSPDCRSAQRLRVMVCFTSLTAEQKEMAVQTGIKPYSW  200 (660)
Q Consensus       121 ~~~~G~~~vpl~~~~~~~~l~~~l~~~~~~~ii~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~  200 (660)
                      |+++|++++|+++..+.+++..+++.++++++++++.....+......  .....++.++....             ..+
T Consensus        73 ~~~~G~~~v~l~~~~~~~~~~~~l~~~~~~~ii~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~-------------~~~  137 (504)
T PRK07514         73 TLRAGAVFLPLNTAYTLAELDYFIGDAEPALVVCDPANFAWLSKIAAA--AGAPHVETLDADGT-------------GSL  137 (504)
T ss_pred             HHHcCcEEEECCCCCCHHHHHHHHHhCCCcEEEEccchhHHHHHhhhc--cCCceEEEecCCCc-------------ccH
Confidence            999999999999999999999999999999999998766544322111  11222333332111             011


Q ss_pred             HHHHhcCccCCccCCCCCCCceEEEEecCCCCCCCceeeecchhHHHHhhhhhhhcccccCCCCCCcEEEEecChhHHHH
Q 006111          201 DEFLHLGKVNEMEILPPQPFNICTIMYTSGTSGDPKGVVLTHETIATFVSGVDLFLDQFEDKMTVDDVYLSFLPLAHILD  280 (660)
Q Consensus       201 ~~~~~~~~~~~~~~~~~~~~~~~~i~~TSGTTG~pK~v~~th~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~pl~~~~g  280 (660)
                      .+..... ..........++++++++|||||||.||+|.+||+++...+......+     ++..++++++.+|++|..+
T Consensus       138 ~~~~~~~-~~~~~~~~~~~~~~a~i~~TSGtTG~PK~v~~s~~~l~~~~~~~~~~~-----~~~~~d~~l~~~p~~~~~g  211 (504)
T PRK07514        138 LEAAAAA-PDDFETVPRGADDLAAILYTSGTTGRSKGAMLSHGNLLSNALTLVDYW-----RFTPDDVLIHALPIFHTHG  211 (504)
T ss_pred             HHhhhhc-CcccCcccCCCCCeEEEEECCCCCCCCcEEEEecHHHHHHHHHHHHHh-----CCCCccEEEEecchHHHHH
Confidence            2211111 111122345679999999999999999999999999999887766655     7888999999999999999


Q ss_pred             HHH-HHHHhhcCcEEEEecC-ChhhHHHHhhhhcCeEEEechHHHHHHHHHHHHHHHhhchHHHHHHHHHHHHHHHHHhh
Q 006111          281 RVI-EEYFFRRGASVGYYHG-DLNALRDDLMELKPTLLAGVPRVFEKIHEGIKKALEELRPLRRRIFDALYKYKLAWMNM  358 (660)
Q Consensus       281 ~~~-~l~~l~~G~~~v~~~~-~~~~~~~~i~~~~~t~~~~~p~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  358 (660)
                      +.. .+.+++.|+++++.+. ++..+++.+  .++|++.++|.++..++....                           
T Consensus       212 ~~~~~~~~l~~G~~~~~~~~~~~~~~~~~i--~~~t~~~~~P~~~~~l~~~~~---------------------------  262 (504)
T PRK07514        212 LFVATNVALLAGASMIFLPKFDPDAVLALM--PRATVMMGVPTFYTRLLQEPR---------------------------  262 (504)
T ss_pred             HHHHHHHHHhcCcEEEECCCCCHHHHHHHH--HhheeeecHHHHHHHHHcCCC---------------------------
Confidence            875 5677999999998876 899999998  479999999999988764210                           


Q ss_pred             CCCCCCcchhhhHHHHHHHHHHhCCcEeEEEEccCCCCHHHHHHHHHhcCCceeeecCCCCCCCceecccCCCccccCcc
Q 006111          359 GYKQREASPLADLLAFRKVKARLGGRLRLVISGGAPLSTEVEEFLRVTCCAFLVQGYGLTETCGPTTVCFPDEMCMVGTA  438 (660)
Q Consensus       359 ~~~~~~~~~~~~~~~~~~~~~~~~~~lr~i~~~G~~l~~~~~~~~~~~~~~~v~~~YG~tE~~~~~~~~~~~~~~~~~~~  438 (660)
                                .+...        .+++|.+++||+++++++.+.+.+.++.++++.||+||++......... ....+++
T Consensus       263 ----------~~~~~--------~~~lr~~~~gg~~~~~~~~~~~~~~~~~~~~~~YG~tE~~~~~~~~~~~-~~~~~~~  323 (504)
T PRK07514        263 ----------LTREA--------AAHMRLFISGSAPLLAETHREFQERTGHAILERYGMTETNMNTSNPYDG-ERRAGTV  323 (504)
T ss_pred             ----------CCccc--------ccceeeEEecCCCCCHHHHHHHHHHhCCcceeecccccccccccCCccc-cccCccc
Confidence                      00011        1489999999999999999999999999999999999998665433322 2334789


Q ss_pred             CCCccCeeEEeeecCCCCCCCCCCCCCceEEEccCCcccccCCCchhhhhcc-cCCccccCceEEECCCCcEEEEeccCC
Q 006111          439 GPVSVYSELRLEEVPEMGYSPLDDPPCGEVCVRGKTLFSGYYKNPDLTRESI-IDGWFHTGDIGQILPNGVVKIIDRKKN  517 (660)
Q Consensus       439 G~~~~~~~v~ivd~~~~~~~~~~~~~~Gei~v~g~~~~~gy~~~~~~~~~~~-~~g~~~TGDl~~~~~~G~l~~~GR~~d  517 (660)
                      |.|+++++++++| ++++ .+++.|+.|||+++|++++.||++++..+.+.| .+|||+|||+++++++|.+++.||.+|
T Consensus       324 G~~~~~~~v~i~d-~~~~-~~~~~g~~Gel~i~~~~~~~gy~~~~~~~~~~~~~~~~~~TGDl~~~~~~g~~~~~GR~~~  401 (504)
T PRK07514        324 GFPLPGVSLRVTD-PETG-AELPPGEIGMIEVKGPNVFKGYWRMPEKTAEEFRADGFFITGDLGKIDERGYVHIVGRGKD  401 (504)
T ss_pred             ccCCCCcEEEEEE-CCCC-CCCCCCCceEEEEecCCccccccCCchhhhhhcccCCCeeecceEEEcCCccEEEeccccc
Confidence            9999999999999 5544 345567899999999999999999999999988 589999999999999999999999999


Q ss_pred             eeEcCCCeeecchhHHHHHhcCcCcceEEEEecCCC---CeEEEEEEcChhhHHHHHHHCCCCCcHHHHhccHHHHHHHH
Q 006111          518 LIKISQGEYVALEYLENVYCVAPIIEDIWVYGDSLK---SMLVAVVVPCEEDTKKWAYSNGHAGSFLELCSLVQLQNYIL  594 (660)
Q Consensus       518 ~i~~~~G~~v~~~~iE~~l~~~p~V~~~~V~~~~~~---~~~~a~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  594 (660)
                      +|++ +|.+|+|.+||+++.++++|.+++|++.+++   +.++++++..++..          .      .        .
T Consensus       402 ~i~~-~G~~i~~~~IE~~l~~~~~v~~~~v~~~~~~~~~~~~~~~~~~~~~~~----------~------~--------~  456 (504)
T PRK07514        402 LIIS-GGYNVYPKEVEGEIDELPGVVESAVIGVPHPDFGEGVTAVVVPKPGAA----------L------D--------E  456 (504)
T ss_pred             eEEe-CCeEECHHHHHHHHHhCCCeeEEEEEeCCCCCcCceEEEEEEECCCCC----------C------C--------H
Confidence            9996 8999999999999999999999999997654   46888888876420          0      1        1


Q ss_pred             HHHHHHHHhCCCCCceeeeEEEEecCCCCCCCCccccccccchHHHHHHHHHH
Q 006111          595 SELKNAAERNKLRGFEHIKGVILDPRPFDMERDLVTATLKKKRNKLLIYYQVE  647 (660)
Q Consensus       595 ~~l~~~~~~~~l~~~~~p~~i~~~~~~~~~~~~P~t~~GKv~R~~l~~~~~~~  647 (660)
                      +++.++++ .+|++|++|..+++++      .+|+|++||++|++|+++|++.
T Consensus       457 ~~l~~~~~-~~l~~~~~p~~i~~v~------~~p~t~~gK~~r~~l~~~~~~~  502 (504)
T PRK07514        457 AAILAALK-GRLARFKQPKRVFFVD------ELPRNTMGKVQKNLLREQYADL  502 (504)
T ss_pred             HHHHHHHH-hhcccCCCCcEEEEec------cCCCCCCcceeHHHHHHHHHhh
Confidence            23334443 5689999999999874      3589999999999999888764

>PRK06188 acyl-CoA synthetase; Validated

Probab=100.00  E-value=8.2e-61  Score=528.03  Aligned_cols=497  Identities=23%  Similarity=0.235  Sum_probs=402.4

Q ss_pred             CCcHHHHHHHHHHhCCCCCceeeeccccCCCCCceEEeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEeCCchhHHHHHHH
Q 006111           41 LNTAWDIFSMSVQKYPGNRMLGWRPFVDGKFGPYVWKTYKEVYEEVLQIVSALRASGAEPGCRVGIYGANCPQWVEAMEA  120 (660)
Q Consensus        41 ~~ti~~~l~~~a~~~pd~~a~~~~~~~d~~~~~~~~~Ty~ql~~~v~~lA~~L~~~Gl~~gd~V~l~~~n~~e~~~~~lA  120 (660)
                      ..|+.++|.++++++|+++|+++.   +      +.+||.||.++++++|..|.+.|+++|++|+++++|+++++++++|
T Consensus        11 ~~~~~~~~~~~~~~~~~~~a~~~~---~------~~~Ty~~l~~~~~~~a~~L~~~gv~~~~~V~i~~~~~~~~~~~~la   81 (524)
T PRK06188         11 GATYGHLLVSALKRYPDRPALVLG---D------TRLTYGQLADRISRYIQAFEALGLGTGDAVALLSLNRPEVLMAIGA   81 (524)
T ss_pred             CccHHHHHHHHHHHCCCCeEEEEC---C------CcccHHHHHHHHHHHHHHHHHcCCCCCCEEEEECCCCHHHHHHHHH
Confidence            468999999999999999999875   3      4799999999999999999999999999999999999999999999


Q ss_pred             HHhCCCeEEecCCCCChhHHHHHHhcccceEEEEccch-hhhhhccccccccCccEEEEecCCcHHHHHHHhhCCcceee
Q 006111          121 CNALSLICVPLYDTLGPGAVNFILDHAEIDFVFVQDKK-VKELLSPDCRSAQRLRVMVCFTSLTAEQKEMAVQTGIKPYS  199 (660)
Q Consensus       121 ~~~~G~~~vpl~~~~~~~~l~~~l~~~~~~~ii~~~~~-~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~  199 (660)
                      |+++|++++|++|..+.+++..+++.++++.+++++.. ...... ..........++.+.......            .
T Consensus        82 ~~~~G~~~v~l~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~------------~  148 (524)
T PRK06188         82 AQLAGLRRTALHPLGSLDDHAYVLEDAGISTLIVDPAPFVERALA-LLARVPSLKHVLTLGPVPDGV------------D  148 (524)
T ss_pred             HHHhCCEEEecccCCCHHHHHHHHHhcCceEEEEecchhhHHHHH-HhhhcCCceEEEEeCCccchh------------h
Confidence            99999999999999999999999999999999998763 222211 111223334455444322100            0


Q ss_pred             HHHHHhcCccCCccCCCCCCCceEEEEecCCCCCCCceeeecchhHHHHhhhhhhhcccccCCCCCCcEEEEecChhHHH
Q 006111          200 WDEFLHLGKVNEMEILPPQPFNICTIMYTSGTSGDPKGVVLTHETIATFVSGVDLFLDQFEDKMTVDDVYLSFLPLAHIL  279 (660)
Q Consensus       200 ~~~~~~~~~~~~~~~~~~~~~~~~~i~~TSGTTG~pK~v~~th~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~pl~~~~  279 (660)
                      ..+..... ..........++++++++|||||||.||+|.++|.++...+......+     ++..++++++.+|++|.+
T Consensus       149 ~~~~~~~~-~~~~~~~~~~~~~~a~i~~TSGtTG~pk~v~~s~~~l~~~~~~~~~~~-----~~~~~~~~l~~~pl~~~~  222 (524)
T PRK06188        149 LLAAAAKF-GPAPLVAAALPPDIAGLAYTGGTTGKPKGVMGTHRSIATMAQIQLAEW-----EWPADPRFLMCTPLSHAG  222 (524)
T ss_pred             HHHhhhcc-CcccccccCCCCCeEEEEeCCCCCCCCceeeeehHHHHHHHHHHHhhc-----CCCcCcEEEEecCchhhh
Confidence            00011000 011111223456699999999999999999999999999888877666     788899999999999988


Q ss_pred             HHHHHHHHhhcCcEEEEecC-ChhhHHHHhhhhcCeEEEechHHHHHHHHHHHHHHHhhchHHHHHHHHHHHHHHHHHhh
Q 006111          280 DRVIEEYFFRRGASVGYYHG-DLNALRDDLMELKPTLLAGVPRVFEKIHEGIKKALEELRPLRRRIFDALYKYKLAWMNM  358 (660)
Q Consensus       280 g~~~~l~~l~~G~~~v~~~~-~~~~~~~~i~~~~~t~~~~~p~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  358 (660)
                      ++. .+.+++.|+++++.+. ++..+++.++++++|+++++|+++..+++.....                         
T Consensus       223 g~~-~~~~l~~G~~~~~~~~~~~~~~~~~i~~~~~t~~~~~P~~l~~l~~~~~~~-------------------------  276 (524)
T PRK06188        223 GAF-FLPTLLRGGTVIVLAKFDPAEVLRAIEEQRITATFLVPTMIYALLDHPDLR-------------------------  276 (524)
T ss_pred             hHH-HHHHHHcCCEEEEcCCCCHHHHHHHHHHhCCEEEEehHHHHHHHHhCcCcc-------------------------
Confidence            864 4667889999999886 8999999999999999999999998886531110                         


Q ss_pred             CCCCCCcchhhhHHHHHHHHHHhCCcEeEEEEccCCCCHHHHHHHHHhcCCceeeecCCCCCCCceecccCCC-----cc
Q 006111          359 GYKQREASPLADLLAFRKVKARLGGRLRLVISGGAPLSTEVEEFLRVTCCAFLVQGYGLTETCGPTTVCFPDE-----MC  433 (660)
Q Consensus       359 ~~~~~~~~~~~~~~~~~~~~~~~~~~lr~i~~~G~~l~~~~~~~~~~~~~~~v~~~YG~tE~~~~~~~~~~~~-----~~  433 (660)
                                  ..+        ++++|.+++||++++++....+.+.++..+++.||+||++..++......     ..
T Consensus       277 ------------~~~--------l~~lr~~~~gg~~~~~~~~~~~~~~~~~~~~~~YG~tE~~~~~~~~~~~~~~~~~~~  336 (524)
T PRK06188        277 ------------TRD--------LSSLETVYYGASPMSPVRLAEAIERFGPIFAQYYGQTEAPMVITYLRKRDHDPDDPK  336 (524)
T ss_pred             ------------CCC--------CcceeEEEEcCCCCCHHHHHHHHHHhCchhhheeCccccCCceeecCchhccccccc
Confidence                        001        14899999999999999988888888999999999999977666543321     23


Q ss_pred             ccCccCCCccCeeEEeeecCCCCCCCCCCCCCceEEEccCCcccccCCCchhhhhcccCCccccCceEEECCCCcEEEEe
Q 006111          434 MVGTAGPVSVYSELRLEEVPEMGYSPLDDPPCGEVCVRGKTLFSGYYKNPDLTRESIIDGWFHTGDIGQILPNGVVKIID  513 (660)
Q Consensus       434 ~~~~~G~~~~~~~v~ivd~~~~~~~~~~~~~~Gei~v~g~~~~~gy~~~~~~~~~~~~~g~~~TGDl~~~~~~G~l~~~G  513 (660)
                      ...++|.|++++++++++ +++..  ++.|+.|||+++|+.++.||++++..+...|.+|||+|||+|+++++|.+++.|
T Consensus       337 ~~~~~G~p~~g~~v~i~~-~~~~~--~~~g~~Gel~v~~~~~~~gy~~~~~~~~~~~~~g~~~TGDl~~~~~~g~~~~~G  413 (524)
T PRK06188        337 RLTSCGRPTPGLRVALLD-EDGRE--VAQGEVGEICVRGPLVMDGYWNRPEETAEAFRDGWLHTGDVAREDEDGFYYIVD  413 (524)
T ss_pred             cCCccccccCCcEEEEEc-CCCCC--CCCCCeeEEEEECcchhhhhcCChHHhhhhhcCCceeecceEEEcCCccEEEEe
Confidence            447899999999999999 66554  455689999999999999999999999999999999999999999999999999


Q ss_pred             ccCCeeEcCCCeeecchhHHHHHhcCcCcceEEEEecCCC---CeEEEEEEcChhhHHHHHHHCCCCCcHHHHhccHHHH
Q 006111          514 RKKNLIKISQGEYVALEYLENVYCVAPIIEDIWVYGDSLK---SMLVAVVVPCEEDTKKWAYSNGHAGSFLELCSLVQLQ  590 (660)
Q Consensus       514 R~~d~i~~~~G~~v~~~~iE~~l~~~p~V~~~~V~~~~~~---~~~~a~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  590 (660)
                      |.+|+|++ +|++|+|.+||++|.+||+|.+++|++.+++   +.++++++++++..          .      .     
T Consensus       414 R~~~~i~~-~G~~i~~~~IE~~l~~~~~v~~~~v~~~~~~~~~~~~~~~v~~~~~~~----------~------~-----  471 (524)
T PRK06188        414 RKKDMIVT-GGFNVFPREVEDVLAEHPAVAQVAVIGVPDEKWGEAVTAVVVLRPGAA----------V------D-----  471 (524)
T ss_pred             ccccceec-CCEEECHHHHHHHHHhCCCeeEEEEEeccCCCcCceEEEEEEECCCCC----------C------C-----
Confidence            99999996 8999999999999999999999999997654   47888888876420          0      1     


Q ss_pred             HHHHHHHHHHHHhCCCCCceeeeEEEEecCCCCCCCCccccccccchHHHHHHHHH
Q 006111          591 NYILSELKNAAERNKLRGFEHIKGVILDPRPFDMERDLVTATLKKKRNKLLIYYQV  646 (660)
Q Consensus       591 ~~~~~~l~~~~~~~~l~~~~~p~~i~~~~~~~~~~~~P~t~~GKv~R~~l~~~~~~  646 (660)
                         .++|+++++ ..++.|.+|..|++++      .+|+|++||++|++|+++|.+
T Consensus       472 ---~~~l~~~~~-~~l~~~~~p~~i~~v~------~~P~t~~gKi~r~~L~~~~~~  517 (524)
T PRK06188        472 ---AAELQAHVK-ERKGSVHAPKQVDFVD------SLPLTALGKPDKKALRARYWE  517 (524)
T ss_pred             ---HHHHHHHHH-HhcccCCCCcEEEEec------CCCCCccccccHHHHHHHHHh
Confidence               123444443 6788999999999874      468999999999999999854

>PRK12476 putative fatty-acid--CoA ligase; Provisional

Probab=100.00  E-value=5.5e-61  Score=537.55  Aligned_cols=501  Identities=18%  Similarity=0.209  Sum_probs=378.0

Q ss_pred             CCCcHHHHHHHHHHhCCCCCceeeeccccC---CCCCceEEeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEeCCchhHHH
Q 006111           40 DLNTAWDIFSMSVQKYPGNRMLGWRPFVDG---KFGPYVWKTYKEVYEEVLQIVSALRASGAEPGCRVGIYGANCPQWVE  116 (660)
Q Consensus        40 ~~~ti~~~l~~~a~~~pd~~a~~~~~~~d~---~~~~~~~~Ty~ql~~~v~~lA~~L~~~Gl~~gd~V~l~~~n~~e~~~  116 (660)
                      ...|+.++|+++++++|+++|+++.   +.   ..+.++.+||+||.++++++|++|.+. +++||+|+++++|++++++
T Consensus        32 ~~~~~~~~~~~~~~~~~~~~a~~~~---~~~~~~~g~~~~~Ty~el~~~~~~lA~~L~~~-~~~gd~V~l~~~n~~e~~~  107 (612)
T PRK12476         32 PGTTLISLIERNIANVGDTVAYRYL---DHSHSAAGCAVELTWTQLGVRLRAVGARLQQV-AGPGDRVAILAPQGIDYVA  107 (612)
T ss_pred             ccCcHHHHHHHHHHhCCCceEEEEE---ccCCCCCCcceEEeHHHHHHHHHHHHHHHHHh-cCCCCEEEEECCCChhHHH
Confidence            3478999999999999999999875   32   123456899999999999999999986 9999999999999999999


Q ss_pred             HHHHHHhCCCeEEec-CCCCC--hhHHHHHHhcccceEEEEccchhhhhhcccccccc--CccEEEEecCCcHHHHHHHh
Q 006111          117 AMEACNALSLICVPL-YDTLG--PGAVNFILDHAEIDFVFVQDKKVKELLSPDCRSAQ--RLRVMVCFTSLTAEQKEMAV  191 (660)
Q Consensus       117 ~~lA~~~~G~~~vpl-~~~~~--~~~l~~~l~~~~~~~ii~~~~~~~~~~~~~~~~~~--~~~~i~~~~~~~~~~~~~~~  191 (660)
                      ++|||+++|++++|+ ++.++  .+++.++++.++++++|++......+.+... ...  ....++.+++...       
T Consensus       108 ~~lA~~~aG~v~vpl~~~~~~~~~~~l~~~l~~~~~~~li~~~~~~~~~~~~~~-~~~~~~~~~~i~~~~~~~-------  179 (612)
T PRK12476        108 GFFAAIKAGTIAVPLFAPELPGHAERLDTALRDAEPTVVLTTTAAAEAVEGFLR-NLPRLRRPRVIAIDAIPD-------  179 (612)
T ss_pred             HHHHHHHcCceeEecCCCCcchhHHHHHHHHHhCCCCEEEEcHHHHHHHHHHHh-hcccccCceEEEeccccc-------
Confidence            999999999999999 57766  7899999999999999998876554322111 111  1123333332110       


Q ss_pred             hCCcceeeHHHHHhcCccCCccCCCCCCCceEEEEecCCCCCCCceeeecchhHHHHhhhhhhhcccccCC-CCCCcEEE
Q 006111          192 QTGIKPYSWDEFLHLGKVNEMEILPPQPFNICTIMYTSGTSGDPKGVVLTHETIATFVSGVDLFLDQFEDK-MTVDDVYL  270 (660)
Q Consensus       192 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~TSGTTG~pK~v~~th~~l~~~~~~~~~~~~~~~~~-~~~~~~~l  270 (660)
                                    .. ..........++++++|+|||||||.||+|+++|+++.+.+......+     + +..+++++
T Consensus       180 --------------~~-~~~~~~~~~~~~d~a~i~yTSGTTG~PKgV~~sh~~l~~~~~~~~~~~-----~~~~~~~~~l  239 (612)
T PRK12476        180 --------------SA-GESFVPVELDTDDVSHLQYTSGSTRPPVGVEITHRAVGTNLVQMILSI-----DLLDRNTHGV  239 (612)
T ss_pred             --------------cc-cccccCCCCCCCceEEEEeCCCCCCCCceEEeeHHHHHHHHHHHHHHh-----ccCCCCceEE
Confidence                          00 011112234678999999999999999999999999987766655444     5 67889999


Q ss_pred             EecChhHHHHHHHHHHHhhcCcEEEEecC-----ChhhHHHHhh--hhcCeEEEechHHHHHHHHHHHHHHHhhchHHHH
Q 006111          271 SFLPLAHILDRVIEEYFFRRGASVGYYHG-----DLNALRDDLM--ELKPTLLAGVPRVFEKIHEGIKKALEELRPLRRR  343 (660)
Q Consensus       271 ~~~pl~~~~g~~~~l~~l~~G~~~v~~~~-----~~~~~~~~i~--~~~~t~~~~~p~~~~~l~~~~~~~~~~~~~~~~~  343 (660)
                      +++|++|.+|+...+.+++.|+++++...     ++..+++.++  ++++++++++|+++..+........         
T Consensus       240 ~~~Pl~h~~g~~~~~~~~~~gg~~~~~~~~~~~~~p~~~~~~i~~~~~~~t~~~~~P~~~~~l~~~~~~~~---------  310 (612)
T PRK12476        240 SWLPLYHDMGLSMIGFPAVYGGHSTLMSPTAFVRRPQRWIKALSEGSRTGRVVTAAPNFAYEWAAQRGLPA---------  310 (612)
T ss_pred             EeCCcccccchHHHHHHHhcCCeEEEECHHHHHHHHHHHHHHHhhhccCCeEEEeCCcHHHHHHHHhcChh---------
Confidence            99999999998776666555666555532     7889999995  5899999999999887764210000         


Q ss_pred             HHHHHHHHHHHHHhhCCCCCCcchhhhHHHHHHHHHHhCCcEeEEEEccCCCCHHHHHHHHHhc---CC---ceeeecCC
Q 006111          344 IFDALYKYKLAWMNMGYKQREASPLADLLAFRKVKARLGGRLRLVISGGAPLSTEVEEFLRVTC---CA---FLVQGYGL  417 (660)
Q Consensus       344 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lr~i~~~G~~l~~~~~~~~~~~~---~~---~v~~~YG~  417 (660)
                                              ....+++        +++| +++||+++++++.+.|.+.+   |+   .+++.||+
T Consensus       311 ------------------------~~~~~~l--------~~lr-~~~gg~~~~~~~~~~~~~~~~~~g~~~~~~~~~YG~  357 (612)
T PRK12476        311 ------------------------EGDDIDL--------SNVV-LIIGSEPVSIDAVTTFNKAFAPYGLPRTAFKPSYGI  357 (612)
T ss_pred             ------------------------hhcCcch--------hHhe-EEecccCCCHHHHHHHHHHHHhcCCCccccccccch
Confidence                                    0001112        3889 99999999999999998877   44   48999999


Q ss_pred             CCCCCceecccCCCc--------------------------cccCccCCCccCeeEEeeecCC-CCCCCCCCCCCceEEE
Q 006111          418 TETCGPTTVCFPDEM--------------------------CMVGTAGPVSVYSELRLEEVPE-MGYSPLDDPPCGEVCV  470 (660)
Q Consensus       418 tE~~~~~~~~~~~~~--------------------------~~~~~~G~~~~~~~v~ivd~~~-~~~~~~~~~~~Gei~v  470 (660)
                      ||++..++.......                          ...+++|+|+++++++|+| ++ +..  ++.|+.||||+
T Consensus       358 TE~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~G~~~~g~~v~ivd-~~~g~~--~~~g~~GEl~v  434 (612)
T PRK12476        358 AEATLFVATIAPDAEPSVVYLDREQLGAGRAVRVAADAPNAVAHVSCGQVARSQWAVIVD-PDTGAE--LPDGEVGEIWL  434 (612)
T ss_pred             hhhheeeeccCCCCCceEEEEcHHHhhCCCeeecCCCCCCcceeEeCCCcCCCCEEEEEe-CCCCcC--CCCCCEEEEEE
Confidence            999866543321100                          0125789999999999999 66 543  45568999999


Q ss_pred             ccCCcccccCCCchhhhhccc-------------------CCccccCceEEECCCCcEEEEeccCCeeEcCCCeeecchh
Q 006111          471 RGKTLFSGYYKNPDLTRESII-------------------DGWFHTGDIGQILPNGVVKIIDRKKNLIKISQGEYVALEY  531 (660)
Q Consensus       471 ~g~~~~~gy~~~~~~~~~~~~-------------------~g~~~TGDl~~~~~~G~l~~~GR~~d~i~~~~G~~v~~~~  531 (660)
                      +|++++.||+++++.+.+.|.                   ++||+|||+|+++ ||+|+++||+||+|++ +|++|+|.+
T Consensus       435 ~g~~v~~GY~~~~~~t~~~f~~~~~~~~~~g~~~~~~~~~~~w~~TGDlg~~~-dG~l~i~GR~~d~I~~-~G~~I~p~e  512 (612)
T PRK12476        435 HGDNIGRGYWGRPEETERTFGAKLQSRLAEGSHADGAADDGTWLRTGDLGVYL-DGELYITGRIADLIVI-DGRNHYPQD  512 (612)
T ss_pred             cCCcccccccCChHHHHHHHhhhhccccccccccccccCCCCeeeccccceeE-CCEEEEEeccCcEEEE-CCcccCHHH
Confidence            999999999999999988873                   2499999999985 9999999999999997 899999999


Q ss_pred             HHHHHh-cCcCcce--EEEEecCCC--CeEEEEEEcChhhHHHHHHHCCCCCcHHHHhccHHHHHHHHHHHHHHHHhCCC
Q 006111          532 LENVYC-VAPIIED--IWVYGDSLK--SMLVAVVVPCEEDTKKWAYSNGHAGSFLELCSLVQLQNYILSELKNAAERNKL  606 (660)
Q Consensus       532 iE~~l~-~~p~V~~--~~V~~~~~~--~~~~a~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~l  606 (660)
                      ||++|. .||.|.+  |+|++.+++  +.++++|++.++...       .        ...++.+++.+.+..       
T Consensus       513 IE~~l~~~~p~V~~~~v~v~~~~~~~~~~~~~~v~~~~~~~~-------~--------~~~~l~~~~~~~l~~-------  570 (612)
T PRK12476        513 IEATVAEASPMVRRGYVTAFTVPAEDNERLVIVAERAAGTSR-------A--------DPAPAIDAIRAAVSR-------  570 (612)
T ss_pred             HHHHHHHhcccccCCcEEEEEecCCCcceEEEEEEecCCccc-------c--------cHHHHHHHHHHHHHH-------
Confidence            999997 5899999  777776644  588888888764200       0        112333333433321       


Q ss_pred             CCcee-eeEEEEecCCCCCCCCccccccccchHHHHHHHHH
Q 006111          607 RGFEH-IKGVILDPRPFDMERDLVTATLKKKRNKLLIYYQV  646 (660)
Q Consensus       607 ~~~~~-p~~i~~~~~~~~~~~~P~t~~GKv~R~~l~~~~~~  646 (660)
                       .|++ |+.+.+++.    +.||+|++||++|++|+++|.+
T Consensus       571 -~~~~~p~~v~~v~~----~~lP~t~~GKi~r~~L~~~~~~  606 (612)
T PRK12476        571 -RHGLAVADVRLVPA----GAIPRTTSGKLARRACRAQYLD  606 (612)
T ss_pred             -hhCCcceEEEEECC----CCcCcCCchHHHHHHHHHHHHc
Confidence             2455 577888742    3468999999999999998754

>PTZ00297 pantothenate kinase; Provisional

Probab=100.00  E-value=2.3e-59  Score=542.84  Aligned_cols=566  Identities=19%  Similarity=0.297  Sum_probs=449.5

Q ss_pred             CCCCcHHHHHHHHHHhCCCCCceeeeccccCCCCCceEEeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEeCCchhHHHHH
Q 006111           39 SDLNTAWDIFSMSVQKYPGNRMLGWRPFVDGKFGPYVWKTYKEVYEEVLQIVSALRASGAEPGCRVGIYGANCPQWVEAM  118 (660)
Q Consensus        39 ~~~~ti~~~l~~~a~~~pd~~a~~~~~~~d~~~~~~~~~Ty~ql~~~v~~lA~~L~~~Gl~~gd~V~l~~~n~~e~~~~~  118 (660)
                      +...|+.++|.+.++++|+++|+...   . ..++++++||+|+.+++.++|++|.+.|+++||+|+|+++|+++|+++.
T Consensus       424 ~~~~Tl~dll~~~a~~~pd~~al~~~---~-~~g~~~~lTY~El~~~V~~lAa~L~~lGV~~GDrVaIls~N~~Ewvia~  499 (1452)
T PTZ00297        424 AGVRSLGEMWERSVTRHSTFRCLGQT---S-ESGESEWLTYGTVDARARELGSGLLALGVRPGDVIGVDCEASRNIVILE  499 (1452)
T ss_pred             ccCCCHHHHHHHHHHHCCCCeEEEEe---c-cCCCceEEEHHHHHHHHHHHHHHHHHcCCCCCCEEEEEcCCCHHHHHHH
Confidence            44569999999999999999998642   1 1244678999999999999999999999999999999999999999999


Q ss_pred             HHHHhCCCeEEecCCCCChhHHHHHHhcccceEEEEccchhhhhhccccccccCccEEEEecCCcH-HHHHHHhhCCcce
Q 006111          119 EACNALSLICVPLYDTLGPGAVNFILDHAEIDFVFVQDKKVKELLSPDCRSAQRLRVMVCFTSLTA-EQKEMAVQTGIKP  197 (660)
Q Consensus       119 lA~~~~G~~~vpl~~~~~~~~l~~~l~~~~~~~ii~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~-~~~~~~~~~~~~~  197 (660)
                      +||+++|++++|+++.  .+++.+++++++++++|++.+....+.+...   ..++.++++++... .........+...
T Consensus       500 lA~~~~GaV~VPly~t--~~eL~yIL~~S~akvVfv~~~~l~kl~~i~~---~~Lr~IIv~d~~~~~~~~~~~~~~~i~~  574 (1452)
T PTZ00297        500 VACALYGFTTLPLVGK--GSTMRTLIDEHKIKVVFADRNSVAAILTCRS---RKLETVVYTHSFYDEDDHAVARDLNITL  574 (1452)
T ss_pred             HHHHHcCCEEEeCCCC--HHHHHHHHHhcCCcEEEEchhHHHHHHhhcc---cCCcEEEEECCCcccccccccccCCcce
Confidence            9999999999999753  6789999999999999999887776654322   36788888864211 0000001113346


Q ss_pred             eeHHHHHhcCccCCc-cCCCCCCCceEEEEe---cCCCCCCCceeeecchhHHHHhhhhhhhcccccCCCCCCcEEEEec
Q 006111          198 YSWDEFLHLGKVNEM-EILPPQPFNICTIMY---TSGTSGDPKGVVLTHETIATFVSGVDLFLDQFEDKMTVDDVYLSFL  273 (660)
Q Consensus       198 ~~~~~~~~~~~~~~~-~~~~~~~~~~~~i~~---TSGTTG~pK~v~~th~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~  273 (660)
                      .+|+++...+..... ......++|++.|+|   ||||||.||||++||+++++.+........  ......+|++++++
T Consensus       575 ~s~~~ll~~G~~~~~~~~~~~~~dDlatIiYtSyTSGTTG~PKGVmLTH~Nlla~~~~~~~~~~--~~~~~~~D~~Ls~L  652 (1452)
T PTZ00297        575 IPYEFVEQKGRLCPVPLKEHVTTDTVFTYVVDNTTSASGDGLAVVRVTHADVLRDISTLVMTGV--LPSSFKKHLMVHFT  652 (1452)
T ss_pred             eeHHHHHhcCcccCccccCCCCcccEEEEEecCCCCCCCcCCcEEEEeHHHHHHHHHHHhhhcc--ccCCCCCCEEEEec
Confidence            789999887632121 123347889999996   999999999999999999999887643210  01345789999999


Q ss_pred             ChhHHHHHHHHHHHhhcCcEEEEecCChhhHHHHhhhhcCeEEEechHHHHHHHHHHHHHHHhhchHHHHHHHHHHHHHH
Q 006111          274 PLAHILDRVIEEYFFRRGASVGYYHGDLNALRDDLMELKPTLLAGVPRVFEKIHEGIKKALEELRPLRRRIFDALYKYKL  353 (660)
Q Consensus       274 pl~~~~g~~~~l~~l~~G~~~v~~~~~~~~~~~~i~~~~~t~~~~~p~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~  353 (660)
                      |++|+++....+.+++.|+++...  ++..+++.|++++||+++++|.+|+++.+.+.+.......+.+++++++...+.
T Consensus       653 PLaHI~er~~~~~~l~~G~~I~~~--d~~~lledL~~~rPTv~~~VPrv~ekI~~~i~~~~~~~~~~~~~lf~~A~~~k~  730 (1452)
T PTZ00297        653 PFAMLFNRVFVLGLFAHGSAVATV--DAAHLQRAFVKFQPTILVAAPSLFSTSRLQLSRANERYSAVYSWLFERAFQLRS  730 (1452)
T ss_pred             hHHHHHHHHHHHHHHHcCCEEEeC--CHHHHHHHHHHHCCEEEEecHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHH
Confidence            999999977777789999998753  789999999999999999999999999988888777777888999999988776


Q ss_pred             HHHhhCCCCCCcchhhhHHHHHHHHHHhCCcEeEEEEccC--CCCHHHHHHHHHhcCCceeeecCCCCCCCceecccCCC
Q 006111          354 AWMNMGYKQREASPLADLLAFRKVKARLGGRLRLVISGGA--PLSTEVEEFLRVTCCAFLVQGYGLTETCGPTTVCFPDE  431 (660)
Q Consensus       354 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lr~i~~~G~--~l~~~~~~~~~~~~~~~v~~~YG~tE~~~~~~~~~~~~  431 (660)
                      ...+.|   ....++++.+.|+++++.+|.++|.+++||+  +++..+..      ++++..+||+||+.   +.+..+.
T Consensus       731 ~~~~~g---~~~~~l~d~LVf~kir~~lGGrlr~~isGga~~~l~~~l~~------~i~i~~g~glTE~~---~~~~~~~  798 (1452)
T PTZ00297        731 RLINIH---RRDSSLLRFIFFRATQELLGGCVEKIVLCVSEESTSFSLLE------HISVCYVPCLREVF---FLPSEGV  798 (1452)
T ss_pred             HHHhcC---CCCcHHHHHHHHHHHHHHhcCCeEEEEECCCccccChHHhC------CceEEEecceEEee---eecCCCC
Confidence            555544   3456689999999999999999999999983  44433322      67789999999943   3333333


Q ss_pred             ccccCccCCCccCeeEEeeecCCCCCCCCCCCCCceEEEccCCcccccCCCchhhhhcccCCccccCceEEECCCCcEEE
Q 006111          432 MCMVGTAGPVSVYSELRLEEVPEMGYSPLDDPPCGEVCVRGKTLFSGYYKNPDLTRESIIDGWFHTGDIGQILPNGVVKI  511 (660)
Q Consensus       432 ~~~~~~~G~~~~~~~v~ivd~~~~~~~~~~~~~~Gei~v~g~~~~~gy~~~~~~~~~~~~~g~~~TGDl~~~~~~G~l~~  511 (660)
                      ..   ..|.|+|++++++.++++.+..    +..|||++++       .++++.|.+. .+||+         +||+|++
T Consensus       799 ~~---~~G~PlpgvEvKI~~~~E~~~~----~~~GEIlvr~-------~kdpe~T~e~-~~gW~---------~dG~L~I  854 (1452)
T PTZ00297        799 FC---VDGTPAPSLQVDLEPFDEPSDG----AGIGQLVLAK-------KGEPRRTLPI-AAQWK---------RDRTLRL  854 (1452)
T ss_pred             cc---cCCeecCceEEEEcccccccCC----CCCCeEEEEE-------CCChHHHHHh-hCcCc---------cCCeEEE
Confidence            22   2399999999999985443321    2369999964       5788888874 36664         6899999


Q ss_pred             EeccCCeeEcCCCeeecchhHHHHHhcCcCcceEEEEecCCCCeEEEEEEcChhhHH-HHHHHCCCCC--------cHHH
Q 006111          512 IDRKKNLIKISQGEYVALEYLENVYCVAPIIEDIWVYGDSLKSMLVAVVVPCEEDTK-KWAYSNGHAG--------SFLE  582 (660)
Q Consensus       512 ~GR~~d~i~~~~G~~v~~~~iE~~l~~~p~V~~~~V~~~~~~~~~~a~v~~~~~~~~-~~~~~~~~~~--------~~~~  582 (660)
                      .||++|+||.++|++|+|+.||+.+.++|.|.+++|+|.+.+. ++|+|+++.+... .|+..++.+.        ...+
T Consensus       855 idRkKdlikls~GEyVaP~~IE~~l~~sp~I~qi~V~Gd~~k~-lvALVvpd~e~l~~~wa~~~gi~~~~~~~~~~~~~e  933 (1452)
T PTZ00297        855 LGPPLGILLPVAYEYVIAAELERIFSQSRYVNDIFLYADPSRP-IIAIVSPNRDTVEFEWRQSHCMGEGGGPARQLGWTE  933 (1452)
T ss_pred             EeccccceECCCCcEEcHHHHHHHHhcCCCccEEEEEecCCCc-eEEEEEeCHHHHHHHHHHHcCCCccccccccCCHHH
Confidence            9999999999999999999999999999999999999987544 9999999999998 9998887631        3444


Q ss_pred             HhccHHHHHHHHHHHHHHHHhCCCCCceeeeEEEEecCCCCCCCCccccccccchHHHHHHHHHHHHHHHhhhc
Q 006111          583 LCSLVQLQNYILSELKNAAERNKLRGFEHIKGVILDPRPFDMERDLVTATLKKKRNKLLIYYQVEIDQLYEKLA  656 (660)
Q Consensus       583 ~~~~~~~~~~~~~~l~~~~~~~~l~~~~~p~~i~~~~~~~~~~~~P~t~~GKv~R~~l~~~~~~~i~~~y~~~~  656 (660)
                      ++.+  ..+.+.+.+.+..+...+..+++++.+.++++||+++..-+||+.|++|+.+.+.|+++|++||.+.+
T Consensus       934 l~~~--~~~~v~~~i~~V~~~n~l~~~ei~k~~~Ll~~~Ft~enGlLTPTlKlKR~~I~~kY~~~Ie~LY~~~~ 1005 (1452)
T PTZ00297        934 LVAY--ASSLLTADFACIAKENGLHPSNVPEYVHLHPHAFKDHSTFLTPYGKIRRDAVHSYFSSVIERFYSDVE 1005 (1452)
T ss_pred             HHHh--HHHHHHHHHHHHHHHhCcCccceeeEEEEeCCCCCCCCCcCChhhhhhHHHHHHHHHHHHHHHhcccc
Confidence            4421  22344444444444456888999999999999999999999999999999999999999999999653

>PRK10946 entE enterobactin synthase subunit E; Provisional

Probab=100.00  E-value=1.5e-60  Score=526.61  Aligned_cols=498  Identities=19%  Similarity=0.200  Sum_probs=398.1

Q ss_pred             CCcHHHHHHHHHHhCCCCCceeeeccccCCCCCceEEeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEeCCchhHHHHHHH
Q 006111           41 LNTAWDIFSMSVQKYPGNRMLGWRPFVDGKFGPYVWKTYKEVYEEVLQIVSALRASGAEPGCRVGIYGANCPQWVEAMEA  120 (660)
Q Consensus        41 ~~ti~~~l~~~a~~~pd~~a~~~~~~~d~~~~~~~~~Ty~ql~~~v~~lA~~L~~~Gl~~gd~V~l~~~n~~e~~~~~lA  120 (660)
                      +.++.++|+.+++  |+++|+++.   +      +.+||.||.+++.++|..|.+.|+++|++|+++++|+++++++++|
T Consensus        24 ~~~~~~~~~~~a~--p~~~a~~~~---~------~~~Ty~el~~~~~~la~~L~~~g~~~g~~V~v~~~n~~~~~~~~la   92 (536)
T PRK10946         24 DLPLTDILTRHAA--SDAIAVICG---E------RQFSYRELNQASDNLACSLRRQGIKPGDTALVQLGNVAEFYITFFA   92 (536)
T ss_pred             CccHHHHHHHhhC--CCCeEEEeC---C------CcccHHHHHHHHHHHHHHHHHcCCCCCCEEEEECCChHHHHHHHHH
Confidence            4689999998887  999999865   3      4799999999999999999999999999999999999999999999


Q ss_pred             HHhCCCeEEecCCCCChhHHHHHHhcccceEEEEccchh----hhhhccccccccCccEEEEecCCcHHHHHHHhhCCcc
Q 006111          121 CNALSLICVPLYDTLGPGAVNFILDHAEIDFVFVQDKKV----KELLSPDCRSAQRLRVMVCFTSLTAEQKEMAVQTGIK  196 (660)
Q Consensus       121 ~~~~G~~~vpl~~~~~~~~l~~~l~~~~~~~ii~~~~~~----~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~  196 (660)
                      |+++|++++++.+.....++..+++.+++++++++....    ....+......+....++..+..             .
T Consensus        93 ~~~~G~v~v~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~-------------~  159 (536)
T PRK10946         93 LLKLGVAPVNALFSHQRSELNAYASQIEPALLIADRQHALFSDDDFLNTLVAEHSSLRVVLLLNDD-------------G  159 (536)
T ss_pred             HHHcCeEEecCCccccHHHHHHHHhhcCCCEEEEeccccccchHHHHHHHHhhCCCceEEEEecCC-------------C
Confidence            999999888777777788899999999999999986431    11111111122233334333221             1


Q ss_pred             eeeHHHHHhcCccCCccCCCCCCCceEEEEecCCCCCCCceeeecchhHHHHhhhhhhhcccccCCCCCCcEEEEecChh
Q 006111          197 PYSWDEFLHLGKVNEMEILPPQPFNICTIMYTSGTSGDPKGVVLTHETIATFVSGVDLFLDQFEDKMTVDDVYLSFLPLA  276 (660)
Q Consensus       197 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~TSGTTG~pK~v~~th~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~pl~  276 (660)
                      ...+.++..... ......+..++++++++|||||||.||+|++||+++...+......+     ++..++++++.+|++
T Consensus       160 ~~~~~~~~~~~~-~~~~~~~~~~~~~a~i~~TSGTTG~PKgV~~s~~~l~~~~~~~~~~~-----~~~~~~~~l~~~p~~  233 (536)
T PRK10946        160 EHSLDDAINHPA-EDFTATPSPADEVAFFQLSGGSTGTPKLIPRTHNDYYYSVRRSVEIC-----GFTPQTRYLCALPAA  233 (536)
T ss_pred             CccHHHHhhCcc-cccccCCCCCCCeEEEEeCCCCCCCCcEEEEehHHHHHHHHHHHHhc-----CCCCCceEEEecCcc
Confidence            122333333321 11223345678999999999999999999999999999888766666     788899999999999


Q ss_pred             HHHHHHH--HHHHhhcCcEEEEecC-ChhhHHHHhhhhcCeEEEechHHHHHHHHHHHHHHHhhchHHHHHHHHHHHHHH
Q 006111          277 HILDRVI--EEYFFRRGASVGYYHG-DLNALRDDLMELKPTLLAGVPRVFEKIHEGIKKALEELRPLRRRIFDALYKYKL  353 (660)
Q Consensus       277 ~~~g~~~--~l~~l~~G~~~v~~~~-~~~~~~~~i~~~~~t~~~~~p~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~  353 (660)
                      |.+++..  .+.+++.|+++++.+. ++..+++.++++++|++.++|.++..+++........                 
T Consensus       234 h~~~~~~~~~~~~l~~g~~~~~~~~~~~~~~~~~l~~~~~t~~~~~p~~~~~l~~~~~~~~~~-----------------  296 (536)
T PRK10946        234 HNYPMSSPGALGVFLAGGTVVLAPDPSATLCFPLIEKHQVNVTALVPPAVSLWLQAIAEGGSR-----------------  296 (536)
T ss_pred             ccccchhhhHHHHhhcCcEEEECCCCCHHHHHHHHHHhCCcEEEeChHHHHHHHhhhcccCcc-----------------
Confidence            9888764  5677999999988765 8889999999999999999999999887643211000                 


Q ss_pred             HHHhhCCCCCCcchhhhHHHHHHHHHHhCCcEeEEEEccCCCCHHHHHHHHHhcCCceeeecCCCCCCCceecccCCCcc
Q 006111          354 AWMNMGYKQREASPLADLLAFRKVKARLGGRLRLVISGGAPLSTEVEEFLRVTCCAFLVQGYGLTETCGPTTVCFPDEMC  433 (660)
Q Consensus       354 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lr~i~~~G~~l~~~~~~~~~~~~~~~v~~~YG~tE~~~~~~~~~~~~~~  433 (660)
                                                ...+++|.+++||+++++.+.+.+.+.+|+++++.||+||++............
T Consensus       297 --------------------------~~~~~l~~v~~gg~~l~~~~~~~~~~~~g~~~~~~YG~tE~~~~~~~~~~~~~~  350 (536)
T PRK10946        297 --------------------------AQLASLKLLQVGGARLSETLARRIPAELGCQLQQVFGMAEGLVNYTRLDDSDER  350 (536)
T ss_pred             --------------------------ccccceeEEEECCCCCCHHHHHHHHHhcCCeEEEeecccccceeeecCCCcccc
Confidence                                      001489999999999999999999998999999999999976544322222233


Q ss_pred             ccCccCCCc-cCeeEEeeecCCCCCCCCCCCCCceEEEccCCcccccCCCchhhhhcc-cCCccccCceEEECCCCcEEE
Q 006111          434 MVGTAGPVS-VYSELRLEEVPEMGYSPLDDPPCGEVCVRGKTLFSGYYKNPDLTRESI-IDGWFHTGDIGQILPNGVVKI  511 (660)
Q Consensus       434 ~~~~~G~~~-~~~~v~ivd~~~~~~~~~~~~~~Gei~v~g~~~~~gy~~~~~~~~~~~-~~g~~~TGDl~~~~~~G~l~~  511 (660)
                      ..+++|.|+ +++.++++| +++.  ++..|+.|||+++|+.++.||+++++.+.+.| .+|||+|||+|++|++|.+++
T Consensus       351 ~~~~~G~p~~~~~~v~i~d-~~~~--~~~~g~~Gel~v~g~~~~~GY~~~~~~t~~~~~~d~~~~TGDl~~~d~~G~l~~  427 (536)
T PRK10946        351 IFTTQGRPMSPDDEVWVAD-ADGN--PLPQGEVGRLMTRGPYTFRGYYKSPQHNASAFDANGFYCSGDLVSIDPDGYITV  427 (536)
T ss_pred             ccccCCcccCCCceEEEEC-CCCC--CCCCCCccEEEEecCccchhhcCCcccchhhcccCCceecCceEEECCCCcEEE
Confidence            447899998 799999998 6665  44567899999999999999999999999988 789999999999999999999


Q ss_pred             EeccCCeeEcCCCeeecchhHHHHHhcCcCcceEEEEecCCC---CeEEEEEEcChhhHHHHHHHCCCCCcHHHHhccHH
Q 006111          512 IDRKKNLIKISQGEYVALEYLENVYCVAPIIEDIWVYGDSLK---SMLVAVVVPCEEDTKKWAYSNGHAGSFLELCSLVQ  588 (660)
Q Consensus       512 ~GR~~d~i~~~~G~~v~~~~iE~~l~~~p~V~~~~V~~~~~~---~~~~a~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~  588 (660)
                      .||.+|+|++ +|++++|.+||+.|.+||+|.+++|++.++.   +.+++++++.++.                  ..  
T Consensus       428 ~gR~~d~i~~-~G~~v~~~eiE~~l~~~~~v~~~~v~~~~~~~~g~~~~a~vv~~~~~------------------~~--  486 (536)
T PRK10946        428 VGREKDQINR-GGEKIAAEEIENLLLRHPAVIHAALVSMEDELMGEKSCAFLVVKEPL------------------KA--  486 (536)
T ss_pred             eccccceeec-CCEEEcHHHHHHHHHhCCCcceEEEEcCCCcccCceEEEEEEeCCCC------------------CH--
Confidence            9999999996 8999999999999999999999999987754   4778888876532                  11  


Q ss_pred             HHHHHHHHHHHHHHhCCCCCceeeeEEEEecCCCCCCCCccccccccchHHHHHHHHHH
Q 006111          589 LQNYILSELKNAAERNKLRGFEHIKGVILDPRPFDMERDLVTATLKKKRNKLLIYYQVE  647 (660)
Q Consensus       589 ~~~~~~~~l~~~~~~~~l~~~~~p~~i~~~~~~~~~~~~P~t~~GKv~R~~l~~~~~~~  647 (660)
                            .++++++++..+++|++|..+.+++      .+|+|++||++|++|++++...
T Consensus       487 ------~~l~~~~~~~~l~~~~~P~~~~~~~------~iP~t~~GKv~r~~L~~~~~~~  533 (536)
T PRK10946        487 ------VQLRRFLREQGIAEFKLPDRVECVD------SLPLTAVGKVDKKQLRQWLASR  533 (536)
T ss_pred             ------HHHHHHHHhCCccccccCcEEEEec------cCCCCCCCcccHHHHHHHHHhh
Confidence                  2344444434599999999999874      4589999999999999887664

>PRK08315 AMP-binding domain protein; Validated

Probab=100.00  E-value=1.4e-60  Score=530.66  Aligned_cols=511  Identities=26%  Similarity=0.336  Sum_probs=406.8

Q ss_pred             CCCCCCCcHHHHHHHHHHhCCCCCceeeeccccCCCCCceEEeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEeCCchhHH
Q 006111           36 SVDSDLNTAWDIFSMSVQKYPGNRMLGWRPFVDGKFGPYVWKTYKEVYEEVLQIVSALRASGAEPGCRVGIYGANCPQWV  115 (660)
Q Consensus        36 ~~~~~~~ti~~~l~~~a~~~pd~~a~~~~~~~d~~~~~~~~~Ty~ql~~~v~~lA~~L~~~Gl~~gd~V~l~~~n~~e~~  115 (660)
                      .++....+|.++|.+.++++|+++|+++.   ++.    +.+||+||.++++++|..|.+.|+++||+|+++++|+++++
T Consensus        10 ~~~~~~~~l~~~l~~~~~~~~~~~ai~~~---~~~----~~~Ty~~l~~~~~~~a~~L~~~gi~~g~~V~i~~~~~~~~~   82 (559)
T PRK08315         10 DVPLLEQTIGQLLDRTAARYPDREALVYR---DQG----LRWTYREFNEEVDALAKGLLALGIEKGDRVGIWAPNVPEWV   82 (559)
T ss_pred             cCChhhccHHHHHHHHHHHCCCCeEEEEc---CCC----eEEcHHHHHHHHHHHHHHHHHcCCCCCCEEEEECCCChHHH
Confidence            44455578999999999999999999875   332    57999999999999999999999999999999999999999


Q ss_pred             HHHHHHHhCCCeEEecCCCCChhHHHHHHhcccceEEEEccchhhh-----hhcccc------------ccccCccEEEE
Q 006111          116 EAMEACNALSLICVPLYDTLGPGAVNFILDHAEIDFVFVQDKKVKE-----LLSPDC------------RSAQRLRVMVC  178 (660)
Q Consensus       116 ~~~lA~~~~G~~~vpl~~~~~~~~l~~~l~~~~~~~ii~~~~~~~~-----~~~~~~------------~~~~~~~~i~~  178 (660)
                      +++|||+++|++++|++|..+.+++..+++.++++++|++......     +.+...            ...+....++.
T Consensus        83 ~~~la~~~~G~~~v~l~~~~~~~~~~~~l~~~~~~~ii~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  162 (559)
T PRK08315         83 LTQFATAKIGAILVTINPAYRLSELEYALNQSGCKALIAADGFKDSDYVAMLYELAPELATCEPGQLQSARLPELRRVIF  162 (559)
T ss_pred             HHHHHHHHhCeEEEecCccCCHHHHHHHHHhcCCCEEEEeccccccchHHHHHHhhhhhhcccccccccccCCCceeEEe
Confidence            9999999999999999999999999999999999999998754211     100000            00012223333


Q ss_pred             ecCCcHHHHHHHhhCCcceeeHHHHHhcCccC-----CccCCCCCCCceEEEEecCCCCCCCceeeecchhHHHHhhhhh
Q 006111          179 FTSLTAEQKEMAVQTGIKPYSWDEFLHLGKVN-----EMEILPPQPFNICTIMYTSGTSGDPKGVVLTHETIATFVSGVD  253 (660)
Q Consensus       179 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~i~~TSGTTG~pK~v~~th~~l~~~~~~~~  253 (660)
                      .+...          ......+.++.......     ........++++++++|||||||.||+|.+||.++...+....
T Consensus       163 ~~~~~----------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~i~~TSGtTG~PK~v~~s~~~l~~~~~~~~  232 (559)
T PRK08315        163 LGDEK----------HPGMLNFDELLALGRAVDDAELAARQATLDPDDPINIQYTSGTTGFPKGATLTHRNILNNGYFIG  232 (559)
T ss_pred             ecccC----------CcccccHHHHHhhccccccccccchhccCCCCCcEEEEEcCCCCCCcceEEeeHHHHHHHHHHHH
Confidence            33211          01123444444322110     1112234678899999999999999999999999998888777


Q ss_pred             hhcccccCCCCCCcEEEEecChhHHHHHHH-HHHHhhcCcEEEEecC--ChhhHHHHhhhhcCeEEEechHHHHHHHHHH
Q 006111          254 LFLDQFEDKMTVDDVYLSFLPLAHILDRVI-EEYFFRRGASVGYYHG--DLNALRDDLMELKPTLLAGVPRVFEKIHEGI  330 (660)
Q Consensus       254 ~~~~~~~~~~~~~~~~l~~~pl~~~~g~~~-~l~~l~~G~~~v~~~~--~~~~~~~~i~~~~~t~~~~~p~~~~~l~~~~  330 (660)
                      ..+     ++..+++++..+|++|.+++.. .+.++..|+++++...  ++..+++.+.++++|+++++|+++..+....
T Consensus       233 ~~~-----~~~~~d~~~~~~p~~~~~g~~~~~~~~l~~g~~~~~~~~~~~~~~~~~~l~~~~~t~~~~~P~~~~~~~~~~  307 (559)
T PRK08315        233 EAM-----KLTEEDRLCIPVPLYHCFGMVLGNLACVTHGATMVYPGEGFDPLATLAAVEEERCTALYGVPTMFIAELDHP  307 (559)
T ss_pred             Hhc-----CCCCCceEEEecCcHHHHHHHHHHHHHHhccceEEEecCCCCHHHHHHHHHHcCCeEEecchHHHHHHHhCc
Confidence            666     7889999999999999999876 5677999999986543  8999999999999999999999998765421


Q ss_pred             HHHHHhhchHHHHHHHHHHHHHHHHHhhCCCCCCcchhhhHHHHHHHHHHhCCcEeEEEEccCCCCHHHHHHHHHhcCCc
Q 006111          331 KKALEELRPLRRRIFDALYKYKLAWMNMGYKQREASPLADLLAFRKVKARLGGRLRLVISGGAPLSTEVEEFLRVTCCAF  410 (660)
Q Consensus       331 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lr~i~~~G~~l~~~~~~~~~~~~~~~  410 (660)
                      ..                                     +..++        +++|.++++|++++..+.+.+.+.++..
T Consensus       308 ~~-------------------------------------~~~~~--------~~lr~~~~~G~~~~~~~~~~~~~~~~~~  342 (559)
T PRK08315        308 DF-------------------------------------ARFDL--------SSLRTGIMAGSPCPIEVMKRVIDKMHMS  342 (559)
T ss_pred             cc-------------------------------------CCCCc--------hhhheeEecCCCCCHHHHHHHHHHcCCc
Confidence            10                                     00111        3899999999999999999999888754


Q ss_pred             -eeeecCCCCCCCceecccCCC--ccccCccCCCccCeeEEeeecCC-CCCCCCCCCCCceEEEccCCcccccCCCchhh
Q 006111          411 -LVQGYGLTETCGPTTVCFPDE--MCMVGTAGPVSVYSELRLEEVPE-MGYSPLDDPPCGEVCVRGKTLFSGYYKNPDLT  486 (660)
Q Consensus       411 -v~~~YG~tE~~~~~~~~~~~~--~~~~~~~G~~~~~~~v~ivd~~~-~~~~~~~~~~~Gei~v~g~~~~~gy~~~~~~~  486 (660)
                       +++.||+||++.+++......  .....++|.|+++++++++| ++ +.  +++.|+.|||+|+|+.++.||++++..+
T Consensus       343 ~l~~~YG~tE~~~~~~~~~~~~~~~~~~~~vG~p~~~~~v~i~d-~~~~~--~~~~g~~GEl~v~g~~~~~gy~~~~~~~  419 (559)
T PRK08315        343 EVTIAYGMTETSPVSTQTRTDDPLEKRVTTVGRALPHLEVKIVD-PETGE--TVPRGEQGELCTRGYSVMKGYWNDPEKT  419 (559)
T ss_pred             ceeEEEcccccccceeecCcccchhhccCCCCccCCCcEEEEEc-CccCC--cCCCCCceEEEEECchhhhhhcCChhHH
Confidence             999999999998766554332  23357999999999999999 65 54  3456689999999999999999999999


Q ss_pred             hhcc-cCCccccCceEEECCCCcEEEEeccCCeeEcCCCeeecchhHHHHHhcCcCcceEEEEecCCC---CeEEEEEEc
Q 006111          487 RESI-IDGWFHTGDIGQILPNGVVKIIDRKKNLIKISQGEYVALEYLENVYCVAPIIEDIWVYGDSLK---SMLVAVVVP  562 (660)
Q Consensus       487 ~~~~-~~g~~~TGDl~~~~~~G~l~~~GR~~d~i~~~~G~~v~~~~iE~~l~~~p~V~~~~V~~~~~~---~~~~a~v~~  562 (660)
                      ...| .++||+|||+|+++++|.++++||.+|+|++ +|.+|++.+||++|.++|+|.+++|++.+++   +.++++|++
T Consensus       420 ~~~~~~~~~~~TGD~~~~~~dg~~~~~GR~d~~i~~-~G~~v~~~eIE~~l~~~~~v~~~~v~~~~~~~~~~~~~~~v~~  498 (559)
T PRK08315        420 AEAIDADGWMHTGDLAVMDEEGYVNIVGRIKDMIIR-GGENIYPREIEEFLYTHPKIQDVQVVGVPDEKYGEEVCAWIIL  498 (559)
T ss_pred             hhcCCCCCCEEccceEEEcCCceEEEEeeccceEEE-CCEEEcHHHHHHHHHhCCCceEEEEEecCCCCCCeEEEEEEEe
Confidence            8888 7899999999999999999999999999996 8999999999999999999999999997654   467888887


Q ss_pred             ChhhHHHHHHHCCCCCcHHHHhccHHHHHHHHHHHHHHHHhCCCCCceeeeEEEEecCCCCCCCCccccccccchHHHHH
Q 006111          563 CEEDTKKWAYSNGHAGSFLELCSLVQLQNYILSELKNAAERNKLRGFEHIKGVILDPRPFDMERDLVTATLKKKRNKLLI  642 (660)
Q Consensus       563 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~l~~~~~p~~i~~~~~~~~~~~~P~t~~GKv~R~~l~~  642 (660)
                      ..+..        .        .        .+++++++. ..||.|++|..+.++      +.+|+|++||++|.+|++
T Consensus       499 ~~~~~--------~--------~--------~~~l~~~l~-~~l~~~~~P~~i~~v------~~lP~t~~GK~~r~~L~~  547 (559)
T PRK08315        499 RPGAT--------L--------T--------EEDVRDFCR-GKIAHYKIPRYIRFV------DEFPMTVTGKIQKFKMRE  547 (559)
T ss_pred             CCCCC--------C--------C--------HHHHHHHHH-hhcccccCCcEEEEc------ccCCCCCCCceeHHHHHH
Confidence            65420        0        1        123334443 678999999999987      446999999999999998


Q ss_pred             HHHHHH
Q 006111          643 YYQVEI  648 (660)
Q Consensus       643 ~~~~~i  648 (660)
                      ++...+
T Consensus       548 ~~~~~~  553 (559)
T PRK08315        548 MMIEEL  553 (559)
T ss_pred             HHHhhh
Confidence            876644

>PRK08633 2-acyl-glycerophospho-ethanolamine acyltransferase; Validated

Probab=100.00  E-value=1.1e-60  Score=575.20  Aligned_cols=509  Identities=23%  Similarity=0.239  Sum_probs=404.7

Q ss_pred             CCCCCCCcHHHHHHHHHHhCCCCCceeeeccccCCCCCceEEeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEeCCchhHH
Q 006111           36 SVDSDLNTAWDIFSMSVQKYPGNRMLGWRPFVDGKFGPYVWKTYKEVYEEVLQIVSALRASGAEPGCRVGIYGANCPQWV  115 (660)
Q Consensus        36 ~~~~~~~ti~~~l~~~a~~~pd~~a~~~~~~~d~~~~~~~~~Ty~ql~~~v~~lA~~L~~~Gl~~gd~V~l~~~n~~e~~  115 (660)
                      ..+...+++.+.|+++++++|+++|+++.   ++     +++||+||.++++++|+.|.+ ++++||+|+++++|+++++
T Consensus       609 ~~~~~~~~l~~~~~~~a~~~p~~~a~~~~---~~-----~~~Ty~el~~~~~~~a~~L~~-~~~~g~~V~i~~~n~~~~~  679 (1146)
T PRK08633        609 SRKEALPPLAEAWIDTAKRNWSRLAVADS---TG-----GELSYGKALTGALALARLLKR-ELKDEENVGILLPPSVAGA  679 (1146)
T ss_pred             hhcCCCCCHHHHHHHHHHhcCCCcEEEcC---CC-----CcCcHHHHHHHHHHHHHHHHH-hCCCCCeEEEECCCchHHH
Confidence            34566788999999999999999999854   33     479999999999999999987 5899999999999999999


Q ss_pred             HHHHHHHhCCCeEEecCCCCChhHHHHHHhcccceEEEEccchhhhhhcccc-ccccCccEEEEecCCcHHHHHHHhhCC
Q 006111          116 EAMEACNALSLICVPLYDTLGPGAVNFILDHAEIDFVFVQDKKVKELLSPDC-RSAQRLRVMVCFTSLTAEQKEMAVQTG  194 (660)
Q Consensus       116 ~~~lA~~~~G~~~vpl~~~~~~~~l~~~l~~~~~~~ii~~~~~~~~~~~~~~-~~~~~~~~i~~~~~~~~~~~~~~~~~~  194 (660)
                      ++++||+++|++++|+++..+.+++.+++++++++++++++.....+.+... ........++..++.....        
T Consensus       680 ~~~la~~~~G~v~v~l~~~~~~~~~~~~l~~~~~~~vi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--------  751 (1146)
T PRK08633        680 LANLALLLAGKVPVNLNYTASEAALKSAIEQAQIKTVITSRKFLEKLKNKGFDLELPENVKVIYLEDLKAKI--------  751 (1146)
T ss_pred             HHHHHHHHcCCEEEEeCCCcCHHHHHHHHHHcCCCEEEEcHHHHHHHhccCCchhcccCceEEEeehhcccc--------
Confidence            9999999999999999999999999999999999999999877665532110 0112222344433321100        


Q ss_pred             cceeeHHHHHhcCccC-----CccCCCCCCCceEEEEecCCCCCCCceeeecchhHHHHhhhhhhhcccccCCCCCCcEE
Q 006111          195 IKPYSWDEFLHLGKVN-----EMEILPPQPFNICTIMYTSGTSGDPKGVVLTHETIATFVSGVDLFLDQFEDKMTVDDVY  269 (660)
Q Consensus       195 ~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~i~~TSGTTG~pK~v~~th~~l~~~~~~~~~~~~~~~~~~~~~~~~  269 (660)
                      .....+.+........     ........++|+++++|||||||.||+|.+||+++...+......+     ++..+|++
T Consensus       752 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~i~~TSGTTG~PKgv~~s~~~~~~~~~~~~~~~-----~~~~~d~~  826 (1146)
T PRK08633        752 SKVDKLTALLAARLLPARLLKRLYGPTFKPDDTATIIFSSGSEGEPKGVMLSHHNILSNIEQISDVF-----NLRNDDVI  826 (1146)
T ss_pred             chhHHHHHHHHhccCCHHHHHhhccCCCCCCCEEEEEECCCCCCCCceEEechHHHHHHHHHHHHhc-----CCCCCCEE
Confidence            0000111111110000     0001345679999999999999999999999999999888776666     78889999


Q ss_pred             EEecChhHHHHHHH-HHHHhhcCcEEEEecC--ChhhHHHHhhhhcCeEEEechHHHHHHHHHHHHHHHhhchHHHHHHH
Q 006111          270 LSFLPLAHILDRVI-EEYFFRRGASVGYYHG--DLNALRDDLMELKPTLLAGVPRVFEKIHEGIKKALEELRPLRRRIFD  346 (660)
Q Consensus       270 l~~~pl~~~~g~~~-~l~~l~~G~~~v~~~~--~~~~~~~~i~~~~~t~~~~~p~~~~~l~~~~~~~~~~~~~~~~~~~~  346 (660)
                      ++.+|++|.+++.. .+.++..|+++++.+.  ++..+++.++++++|++.++|++++.+.+....              
T Consensus       827 l~~~p~~h~~g~~~~~~~~l~~g~~~v~~~~~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~--------------  892 (1146)
T PRK08633        827 LSSLPFFHSFGLTVTLWLPLLEGIKVVYHPDPTDALGIAKLVAKHRATILLGTPTFLRLYLRNKKL--------------  892 (1146)
T ss_pred             EEcCcHHHHHhHHHHHHHHHHCCCEEEEeCCCCCHHHHHHHHHHcCCeEEEecHHHHHHHHhcccc--------------
Confidence            99999999999876 6778999999988764  889999999999999999999999887652110              


Q ss_pred             HHHHHHHHHHhhCCCCCCcchhhhHHHHHHHHHHhCCcEeEEEEccCCCCHHHHHHHHHhcCCceeeecCCCCCCCceec
Q 006111          347 ALYKYKLAWMNMGYKQREASPLADLLAFRKVKARLGGRLRLVISGGAPLSTEVEEFLRVTCCAFLVQGYGLTETCGPTTV  426 (660)
Q Consensus       347 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lr~i~~~G~~l~~~~~~~~~~~~~~~v~~~YG~tE~~~~~~~  426 (660)
                                             +..+        .+++|.+++||+++++++.+.+++.+|+++++.||+||++.+++.
T Consensus       893 -----------------------~~~~--------~~~lr~~~~gg~~~~~~~~~~~~~~~g~~~~~~YG~tE~~~~~~~  941 (1146)
T PRK08633        893 -----------------------HPLM--------FASLRLVVAGAEKLKPEVADAFEEKFGIRILEGYGATETSPVASV  941 (1146)
T ss_pred             -----------------------Cccc--------CCCeeeEEEcCCcCCHHHHHHHHHHhCCCeecccccccCcceEEE
Confidence                                   0111        148999999999999999999999999999999999999887765


Q ss_pred             ccCCC---------ccccCccCCCccCeeEEeeecCCCCCCCCCCCCCceEEEccCCcccccCCCchhhhhcccC----C
Q 006111          427 CFPDE---------MCMVGTAGPVSVYSELRLEEVPEMGYSPLDDPPCGEVCVRGKTLFSGYYKNPDLTRESIID----G  493 (660)
Q Consensus       427 ~~~~~---------~~~~~~~G~~~~~~~v~ivd~~~~~~~~~~~~~~Gei~v~g~~~~~gy~~~~~~~~~~~~~----g  493 (660)
                      .....         ....+++|+|+|+++++|+| ++++ .+++.|+.|||+++|+.++.||+++++.+.+.|.+    |
T Consensus       942 ~~~~~~~~~~~~~~~~~~~~vG~p~~~~~v~i~d-~~~~-~~~~~g~~Gel~v~g~~~~~gY~~~~~~t~~~~~~~~~~~ 1019 (1146)
T PRK08633        942 NLPDVLAADFKRQTGSKEGSVGMPLPGVAVRIVD-PETF-EELPPGEDGLILIGGPQVMKGYLGDPEKTAEVIKDIDGIG 1019 (1146)
T ss_pred             ecCcccccccccccCCCCCCccccCCCCEEEEEc-CCCC-ccCCCCCceEEEEcCCCccccccCCccchHHHhhcCCCCC
Confidence            43221         12357899999999999999 5433 34556789999999999999999999999988877    9


Q ss_pred             ccccCceEEECCCCcEEEEeccCCeeEcCCCeeecchhHHHHHhcCc--CcceEEEEecCCC---CeEEEEEEcChhhHH
Q 006111          494 WFHTGDIGQILPNGVVKIIDRKKNLIKISQGEYVALEYLENVYCVAP--IIEDIWVYGDSLK---SMLVAVVVPCEEDTK  568 (660)
Q Consensus       494 ~~~TGDl~~~~~~G~l~~~GR~~d~i~~~~G~~v~~~~iE~~l~~~p--~V~~~~V~~~~~~---~~~~a~v~~~~~~~~  568 (660)
                      ||+|||+|++|+||++++.||.||+|++ +|++|+|.|||++|.+||  .+.+|+|++.+++   +.++++++....   
T Consensus      1020 ~~~TGD~~~~~~~g~l~~~gR~~d~i~~-~G~~v~~~eiE~~l~~~~~~~~~~~~v~~~~~~~~g~~~~~~v~~~~~--- 1095 (1146)
T PRK08633       1020 WYVTGDKGHLDEDGFLTITDRYSRFAKI-GGEMVPLGAVEEELAKALGGEEVVFAVTAVPDEKKGEKLVVLHTCGAE--- 1095 (1146)
T ss_pred             eEECCCEEEEcCCceEEEEecccchhhh-CcEEECHHHHHHHHHhccCCCCceEEEEeccCCCCCcEEEEEEecCcc---
Confidence            9999999999999999999999999997 899999999999999999  5668999987765   377888776321   


Q ss_pred             HHHHHCCCCCcHHHHhccHHHHHHHHHHHHHHHHhCCCCCceeeeEEEEecCCCCCCCCccccccccchHHHHHHHHHH
Q 006111          569 KWAYSNGHAGSFLELCSLVQLQNYILSELKNAAERNKLRGFEHIKGVILDPRPFDMERDLVTATLKKKRNKLLIYYQVE  647 (660)
Q Consensus       569 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~l~~~~~p~~i~~~~~~~~~~~~P~t~~GKv~R~~l~~~~~~~  647 (660)
                                      .        .+++++++.+..+|.|++|..+++++      ++|+|++||++|++|++...+.
T Consensus      1096 ----------------~--------~~~l~~~~~~~~l~~~~~P~~i~~~~------~iP~t~~GKi~r~~L~~~~~~~ 1144 (1146)
T PRK08633       1096 ----------------D--------VEELKRAIKESGLPNLWKPSRYFKVE------ALPLLGSGKLDLKGLKELALAL 1144 (1146)
T ss_pred             ----------------C--------HHHHHHHHHhcCCCcccCCcEEEEec------CcCCCCCCCCcHHHHHHHHHHh
Confidence                            1        12333333346799999999988874      4689999999999999876654

>PRK06018 putative acyl-CoA synthetase; Provisional

Probab=100.00  E-value=2.2e-60  Score=526.10  Aligned_cols=507  Identities=22%  Similarity=0.251  Sum_probs=398.4

Q ss_pred             CcHHHHHHHHHHhCCCCCceeeeccccCCCCCceEEeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEeCCchhHHHHHHHH
Q 006111           42 NTAWDIFSMSVQKYPGNRMLGWRPFVDGKFGPYVWKTYKEVYEEVLQIVSALRASGAEPGCRVGIYGANCPQWVEAMEAC  121 (660)
Q Consensus        42 ~ti~~~l~~~a~~~pd~~a~~~~~~~d~~~~~~~~~Ty~ql~~~v~~lA~~L~~~Gl~~gd~V~l~~~n~~e~~~~~lA~  121 (660)
                      .++.++|+++++++||+++++..   .  .+..+++||+||.++++++|++|.+.|+++||+|+++++|++++++++|||
T Consensus        10 ~~~~~~~~~~a~~~~~~~~~~~~---~--~~~~~~~Ty~el~~~v~~la~~L~~~g~~~gd~v~i~~~~~~~~~~~~la~   84 (542)
T PRK06018         10 LLCHRIIDHAARIHGNREVVTRS---V--EGPIVRTTYAQIHDRALKVSQALDRDGIKLGDRVATIAWNTWRHLEAWYGI   84 (542)
T ss_pred             CCHHHHHHHHHHhCCCceEEEee---c--cCCceEEEHHHHHHHHHHHHHHHHHcCCCCCCEEEEEcCCchHHHHHHHHH
Confidence            48999999999999999999853   1  123578999999999999999999999999999999999999999999999


Q ss_pred             HhCCCeEEecCCCCChhHHHHHHhcccceEEEEccchhhhhhccccccccCccEEEEecCCcHHHHHHHhhCCcceeeHH
Q 006111          122 NALSLICVPLYDTLGPGAVNFILDHAEIDFVFVQDKKVKELLSPDCRSAQRLRVMVCFTSLTAEQKEMAVQTGIKPYSWD  201 (660)
Q Consensus       122 ~~~G~~~vpl~~~~~~~~l~~~l~~~~~~~ii~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~  201 (660)
                      +++|++++|+++.++.+++..+++.+++++++++......+.+... .......++...+....    ..........+.
T Consensus        85 ~~~G~~~v~l~~~~~~~~l~~~l~~~~~~~i~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~  159 (542)
T PRK06018         85 MGIGAICHTVNPRLFPEQIAWIINHAEDRVVITDLTFVPILEKIAD-KLPSVERYVVLTDAAHM----PQTTLKNAVAYE  159 (542)
T ss_pred             HhcCeEeeccccccCHHHHHHHHhccCCCEEEEccccHHHHHHHHh-hCCCccEEEEecccccc----cccCccccccHH
Confidence            9999999999999999999999999999999999877665543222 22333444444322100    000001223455


Q ss_pred             HHHhcCccCCccCCCCCCCceEEEEecCCCCCCCceeeecchhHH-HHh-hhhhhhcccccCCCCCCcEEEEecChhHHH
Q 006111          202 EFLHLGKVNEMEILPPQPFNICTIMYTSGTSGDPKGVVLTHETIA-TFV-SGVDLFLDQFEDKMTVDDVYLSFLPLAHIL  279 (660)
Q Consensus       202 ~~~~~~~~~~~~~~~~~~~~~~~i~~TSGTTG~pK~v~~th~~l~-~~~-~~~~~~~~~~~~~~~~~~~~l~~~pl~~~~  279 (660)
                      ++...... ........++++++++|||||||.||+|.+||++.+ ... ......+     ++..+|+++...|++|.+
T Consensus       160 ~~~~~~~~-~~~~~~~~~~~~~~i~~TSGTTG~PKgv~~s~~~~~~~~~~~~~~~~~-----~~~~~d~~~~~~p~~h~~  233 (542)
T PRK06018        160 EWIAEADG-DFAWKTFDENTAAGMCYTSGTTGDPKGVLYSHRSNVLHALMANNGDAL-----GTSAADTMLPVVPLFHAN  233 (542)
T ss_pred             HHhccCCc-ccCcccCCccceeeEEecCCCCCCCcEEEEechhHHHHHHHHhhhhhc-----CCCCCCEEEEecCHHHHh
Confidence            55544321 122234567889999999999999999999999743 222 2222233     678899999999999999


Q ss_pred             HHHHHHHHhhcCcEEEEecC--ChhhHHHHhhhhcCeEEEechHHHHHHHHHHHHHHHhhchHHHHHHHHHHHHHHHHHh
Q 006111          280 DRVIEEYFFRRGASVGYYHG--DLNALRDDLMELKPTLLAGVPRVFEKIHEGIKKALEELRPLRRRIFDALYKYKLAWMN  357 (660)
Q Consensus       280 g~~~~l~~l~~G~~~v~~~~--~~~~~~~~i~~~~~t~~~~~p~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  357 (660)
                      ++...+.++..|+++++...  ++..+++.++++++|+++++|+++..+.+......                       
T Consensus       234 ~~~~~~~~~~~g~~~v~~~~~~~~~~~~~~l~~~~~t~~~~~p~~~~~l~~~~~~~~-----------------------  290 (542)
T PRK06018        234 SWGIAFSAPSMGTKLVMPGAKLDGASVYELLDTEKVTFTAGVPTVWLMLLQYMEKEG-----------------------  290 (542)
T ss_pred             hhHHHHhhhhcCceEEccCcCCCHHHHHHHHHhcCCceeecCcHHHHHHHhcccccC-----------------------
Confidence            88877778899999988653  78899999999999999999999998875332110                       


Q ss_pred             hCCCCCCcchhhhHHHHHHHHHHhCCcEeEEEEccCCCCHHHHHHHHHhcCCceeeecCCCCCCCceecccCCC------
Q 006111          358 MGYKQREASPLADLLAFRKVKARLGGRLRLVISGGAPLSTEVEEFLRVTCCAFLVQGYGLTETCGPTTVCFPDE------  431 (660)
Q Consensus       358 ~~~~~~~~~~~~~~~~~~~~~~~~~~~lr~i~~~G~~l~~~~~~~~~~~~~~~v~~~YG~tE~~~~~~~~~~~~------  431 (660)
                                    .+        .+++|.++++|+++++++.+.|++ ++.++++.||+||++.+++.+....      
T Consensus       291 --------------~~--------~~~lr~~~~~G~~l~~~~~~~~~~-~~~~~~~~YG~tE~~~~~~~~~~~~~~~~~~  347 (542)
T PRK06018        291 --------------LK--------LPHLKMVVCGGSAMPRSMIKAFED-MGVEVRHAWGMTEMSPLGTLAALKPPFSKLP  347 (542)
T ss_pred             --------------CC--------cccceEEEEcCCCCCHHHHHHHHH-hCCCeEeeecccccCcccccccCccccccCC
Confidence                          00        138999999999999999999999 8999999999999998765442111      


Q ss_pred             ----ccccCccCCCccCeeEEeeecCCCCCCCCCCCCCceEEEccCCcccccCCCchhhhhcc-cCCccccCceEEECCC
Q 006111          432 ----MCMVGTAGPVSVYSELRLEEVPEMGYSPLDDPPCGEVCVRGKTLFSGYYKNPDLTRESI-IDGWFHTGDIGQILPN  506 (660)
Q Consensus       432 ----~~~~~~~G~~~~~~~v~ivd~~~~~~~~~~~~~~Gei~v~g~~~~~gy~~~~~~~~~~~-~~g~~~TGDl~~~~~~  506 (660)
                          .....++|.|.++++++|+| +++...+.+.+..|||+++|++++.||+++.   ...+ .+|||+|||+++++++
T Consensus       348 ~~~~~~~~~~~G~~~~g~~i~v~d-~~~~~~~~~~~~~Gel~i~g~~~~~gy~~~~---~~~~~~~~~~~TGDl~~~~~~  423 (542)
T PRK06018        348 GDARLDVLQKQGYPPFGVEMKITD-DAGKELPWDGKTFGRLKVRGPAVAAAYYRVD---GEILDDDGFFDTGDVATIDAY  423 (542)
T ss_pred             chhhhhccccCCCCCCCcEEEEEC-CCCCCCCCCCCceeEEEEecCCcchhhhcCc---ccEecCCcEEEcCCEEEEcCC
Confidence                01235789999999999999 7777666655568999999999999999842   2233 6899999999999999


Q ss_pred             CcEEEEeccCCeeEcCCCeeecchhHHHHHhcCcCcceEEEEecCCC---CeEEEEEEcChhhHHHHHHHCCCCCcHHHH
Q 006111          507 GVVKIIDRKKNLIKISQGEYVALEYLENVYCVAPIIEDIWVYGDSLK---SMLVAVVVPCEEDTKKWAYSNGHAGSFLEL  583 (660)
Q Consensus       507 G~l~~~GR~~d~i~~~~G~~v~~~~iE~~l~~~p~V~~~~V~~~~~~---~~~~a~v~~~~~~~~~~~~~~~~~~~~~~~  583 (660)
                      |.+++.||.+|+|++ +|.+++|.+||+.+.+||+|.+|+|++.++.   +.+.++|++.++..        .       
T Consensus       424 g~~~~~GR~~d~i~~-~G~~v~~~eIE~~l~~~~~v~~~~v~~~~~~~~~~~~~~~v~~~~~~~--------~-------  487 (542)
T PRK06018        424 GYMRITDRSKDVIKS-GGEWISSIDLENLAVGHPKVAEAAVIGVYHPKWDERPLLIVQLKPGET--------A-------  487 (542)
T ss_pred             ccEEEEecCCCeEEE-CCEEECHHHHHHHHHhCCcceeEEEEeccCCCcCceeEEEEEeCCCCC--------C-------
Confidence            999999999999996 8999999999999999999999999997654   47788887765420        0       


Q ss_pred             hccHHHHHHHHHHHHHHHHhCCCCCceeeeEEEEecCCCCCCCCccccccccchHHHHHHHHH
Q 006111          584 CSLVQLQNYILSELKNAAERNKLRGFEHIKGVILDPRPFDMERDLVTATLKKKRNKLLIYYQV  646 (660)
Q Consensus       584 ~~~~~~~~~~~~~l~~~~~~~~l~~~~~p~~i~~~~~~~~~~~~P~t~~GKv~R~~l~~~~~~  646 (660)
                       .        .+++.++++ .+++.|.+|..+.+++      .+|+|++||++|++|+++|.+
T Consensus       488 -~--------~~~l~~~~~-~~l~~~~~P~~i~~v~------~iP~t~~GKi~r~~L~~~~~~  534 (542)
T PRK06018        488 -T--------REEILKYMD-GKIAKWWMPDDVAFVD------AIPHTATGKILKTALREQFKD  534 (542)
T ss_pred             -C--------HHHHHHHHH-hhCccccCCcEEEEec------cCCCCCcchhhHHHHHHHHhc
Confidence             1        123444443 6789999999999874      468999999999999988765

>PRK05851 long-chain-fatty-acid--[acyl-carrier-protein] ligase; Validated

Probab=100.00  E-value=3.2e-61  Score=530.18  Aligned_cols=485  Identities=18%  Similarity=0.192  Sum_probs=364.1

Q ss_pred             CCcHHHHHHHHHHhCCCCCceeeeccccCCCCCceEEeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEeCCchhHHHHHHH
Q 006111           41 LNTAWDIFSMSVQKYPGNRMLGWRPFVDGKFGPYVWKTYKEVYEEVLQIVSALRASGAEPGCRVGIYGANCPQWVEAMEA  120 (660)
Q Consensus        41 ~~ti~~~l~~~a~~~pd~~a~~~~~~~d~~~~~~~~~Ty~ql~~~v~~lA~~L~~~Gl~~gd~V~l~~~n~~e~~~~~lA  120 (660)
                      ||-+.+.|+..++++|+++|+++.   +  ++.++++||+||.++++++|.+|.+.  ++||+|+++++|++++++++||
T Consensus         1 ~~~~~~~l~~~~~~~~~~~a~~~~---~--~~~~~~~ty~el~~~~~~lA~~L~~~--~~g~~V~l~~~~~~e~~~~~la   73 (525)
T PRK05851          1 MNELAAALSDAMTASGRDLVVLDR---E--SGLWRRHPWPEVHGRAENVAARLLDR--DRPGAVGLVGEPTVELVAAIQG   73 (525)
T ss_pred             CchHHHHHHHHhcCCCCceEEeCC---C--CCcceeecHHHHHHHHHHHHHHHHhc--CCCCeEEEEcCCCHHHHHHHHH
Confidence            455899999999999999999865   3  34578999999999999999999987  7999999999999999999999


Q ss_pred             HHhCCCeEEecCCC--------CChhHHHHHHhcccceEEEEccchhhhhhccccccccCccEEEEecCCcHHHHHHHhh
Q 006111          121 CNALSLICVPLYDT--------LGPGAVNFILDHAEIDFVFVQDKKVKELLSPDCRSAQRLRVMVCFTSLTAEQKEMAVQ  192 (660)
Q Consensus       121 ~~~~G~~~vpl~~~--------~~~~~l~~~l~~~~~~~ii~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~  192 (660)
                      |+++|++++ +++.        ...+++..+++.++++++|++......+....    ..    +.+.+           
T Consensus        74 ~~~~G~~~~-~~~~~~~~~~~~~~~~~~~~~l~~~~~~~vi~~~~~~~~~~~~~----~~----~~~~~-----------  133 (525)
T PRK05851         74 AWLAGAAVS-ILPGPVRGADDGRWADATLTRFAGIGVRTVLSHGSHLERLRAVD----SS----VTVHD-----------  133 (525)
T ss_pred             HHHcCCCCc-CCCCCCCccchhhHHHHHHHHHHhcCCCEEEeCHHHHHHHHHhh----cc----ccccc-----------
Confidence            999999865 3332        12245556789999999999876554332211    00    00000           


Q ss_pred             CCcceeeHHHHHhcCccCCccCCCCCCCceEEEEecCCCCCCCceeeecchhHHHHhhhhhhhcccccCCCC-CCcEEEE
Q 006111          193 TGIKPYSWDEFLHLGKVNEMEILPPQPFNICTIMYTSGTSGDPKGVVLTHETIATFVSGVDLFLDQFEDKMT-VDDVYLS  271 (660)
Q Consensus       193 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~TSGTTG~pK~v~~th~~l~~~~~~~~~~~~~~~~~~~-~~~~~l~  271 (660)
                             +......  ..........++++++|+|||||||.||+|++||+++.+.+..+...+     ++. .+|++++
T Consensus       134 -------~~~~~~~--~~~~~~~~~~~~d~a~i~~TSGTTG~PKgV~~th~~~~~~~~~~~~~~-----~~~~~~d~~l~  199 (525)
T PRK05851        134 -------LATAAHT--NRSASLTPPDSGGPAVLQGTAGSTGTPRTAILSPGAVLSNLRGLNARV-----GLDAATDVGCS  199 (525)
T ss_pred             -------ccccccc--cccccCCCCCCCCeEEEEeCCCCCCCCcEEEecHHHHHHHHHHHHHHh-----CCCCCCCeEEE
Confidence                   0000000  000111234678999999999999999999999999999888777666     677 8999999


Q ss_pred             ecChhHHHHHHHHHHHhhcCcEEEEecC-----ChhhHHHHhhhhcCeEEEechHHHHHHHHHHHHHHHhhchHHHHHHH
Q 006111          272 FLPLAHILDRVIEEYFFRRGASVGYYHG-----DLNALRDDLMELKPTLLAGVPRVFEKIHEGIKKALEELRPLRRRIFD  346 (660)
Q Consensus       272 ~~pl~~~~g~~~~l~~l~~G~~~v~~~~-----~~~~~~~~i~~~~~t~~~~~p~~~~~l~~~~~~~~~~~~~~~~~~~~  346 (660)
                      ++|++|.+++...+.+++.|+++++.+.     ++..+++.+.++++|++..+|.++..+.+....              
T Consensus       200 ~~pl~h~~g~~~~~~~l~~G~~~~~~~~~~~~~~~~~~~~~i~~~~~t~~~~p~~~~~~l~~~~~~--------------  265 (525)
T PRK05851        200 WLPLYHDMGLAFLLTAALAGAPLWLAPTTAFSASPFRWLSWLSDSRATLTAAPNFAYNLIGKYARR--------------  265 (525)
T ss_pred             cCCCccCccHHHHHHHHHcCCeEEEcCHHHHHHCHHHHHHHHHHhCCeEEeCCcHHHHHHHHhhcc--------------
Confidence            9999999999878888999999998762     577899999999999886655554444321100              


Q ss_pred             HHHHHHHHHHhhCCCCCCcchhhhHHHHHHHHHHhCCcEeEEEEccCCCCHHHHHHHHHh---cCC---ceeeecCCCCC
Q 006111          347 ALYKYKLAWMNMGYKQREASPLADLLAFRKVKARLGGRLRLVISGGAPLSTEVEEFLRVT---CCA---FLVQGYGLTET  420 (660)
Q Consensus       347 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lr~i~~~G~~l~~~~~~~~~~~---~~~---~v~~~YG~tE~  420 (660)
                                            ....++        +++|.+++||+++++++.++|.+.   +|.   .+++.||+||+
T Consensus       266 ----------------------~~~~~l--------~~lr~~~~gG~~l~~~~~~~~~~~~~~~g~~~~~~~~~YG~TE~  315 (525)
T PRK05851        266 ----------------------VSDVDL--------GALRVALNGGEPVDCDGFERFATAMAPFGFDAGAAAPSYGLAES  315 (525)
T ss_pred             ----------------------ccCCCH--------HHhheeEeccccCCHHHHHHHHHHHhhcCCChhhcccccchhhh
Confidence                                  000111        389999999999999999988764   354   49999999999


Q ss_pred             CCceecccCC--------------CccccCccCCCccCeeEEeeecCCCCCCCCCCCCCceEEEccCCcccccCCCchhh
Q 006111          421 CGPTTVCFPD--------------EMCMVGTAGPVSVYSELRLEEVPEMGYSPLDDPPCGEVCVRGKTLFSGYYKNPDLT  486 (660)
Q Consensus       421 ~~~~~~~~~~--------------~~~~~~~~G~~~~~~~v~ivd~~~~~~~~~~~~~~Gei~v~g~~~~~gy~~~~~~~  486 (660)
                      +..++.....              .....+++|+|++|++++|+| +++. .+++.|+.|||+++|++++.||++++..+
T Consensus       316 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vG~p~~g~~v~i~d-~~~~-~~~~~g~~GEl~v~g~~~~~GY~~~~~~~  393 (525)
T PRK05851        316 TCAVTVPVPGIGLRVDEVTTDDGSGARRHAVLGNPIPGMEVRISP-GDGA-AGVAGREIGEIEIRGASMMSGYLGQAPID  393 (525)
T ss_pred             ceEEEecCCCCCceeeeeccccCcccceeeeecCCCCCcEEEEEC-CCCC-ccCCCCCeEEEEEecCchhhccccCCccC
Confidence            8766543221              012336899999999999998 5554 33456689999999999999999988643


Q ss_pred             hhcccCCccccCceEEECCCCcEEEEeccCCeeEcCCCeeecchhHHHHHhcCcCcceEEEEecCCC---CeEEEEEEcC
Q 006111          487 RESIIDGWFHTGDIGQILPNGVVKIIDRKKNLIKISQGEYVALEYLENVYCVAPIIEDIWVYGDSLK---SMLVAVVVPC  563 (660)
Q Consensus       487 ~~~~~~g~~~TGDl~~~~~~G~l~~~GR~~d~i~~~~G~~v~~~~iE~~l~~~p~V~~~~V~~~~~~---~~~~a~v~~~  563 (660)
                          .+|||+|||+|+++ +|.|+++||.||+|++ +|++|+|.+||++|.+||+|.+|+|++.+++   +.+.++|+..
T Consensus       394 ----~~~~~~TGDl~~~~-~G~l~~~GR~dd~i~~-~G~~v~p~eIE~~l~~~p~V~~~~vv~~~~~~~~~~~~~~v~~~  467 (525)
T PRK05851        394 ----PDDWFPTGDLGYLV-DGGLVVCGRAKELITV-AGRNIFPTEIERVAAQVRGVREGAVVAVGTGEGSARPGLVIAAE  467 (525)
T ss_pred             ----CCCceeccceEEEE-CCEEEEEeecCCEEEE-CCEEeCHHHHHHHHHhCCCcccceEEEEEecCCCCceeEEEEEE
Confidence                47899999999996 8999999999999997 8999999999999999999999999986543   2455555443


Q ss_pred             hhhHHHHHHHCCCCCcHHHHhccHHHHHHHHHHHHHHHHhCCCCCceeeeEEEEecCCCCCCCCccccccccchHHHHHH
Q 006111          564 EEDTKKWAYSNGHAGSFLELCSLVQLQNYILSELKNAAERNKLRGFEHIKGVILDPRPFDMERDLVTATLKKKRNKLLIY  643 (660)
Q Consensus       564 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~l~~~~~p~~i~~~~~~~~~~~~P~t~~GKv~R~~l~~~  643 (660)
                      ...         .        +..++.+++.+.|.++     +  +++|+.+++++.    +.+|+|++||++|++|++.
T Consensus       468 ~~~---------~--------~~~~~~~~~~~~l~~~-----l--~~~P~~~~~v~~----~~lP~t~~GKi~r~~L~~~  519 (525)
T PRK05851        468 FRG---------P--------DEAGARSEVVQRVASE-----C--GVVPSDVVFVAP----GSLPRTSSGKLRRLAVKRS  519 (525)
T ss_pred             ecC---------c--------chHHHHHHHHHHHHHH-----h--CCCccEEEEECC----CCcCcCcchHHHHHHHHHH
Confidence            110         0        1122333444433222     2  278888988851    2468999999999999987


Q ss_pred             HHH
Q 006111          644 YQV  646 (660)
Q Consensus       644 ~~~  646 (660)
                      ++.
T Consensus       520 ~~~  522 (525)
T PRK05851        520 LEA  522 (525)
T ss_pred             HHh
Confidence            754

>TIGR03098 ligase_PEP_1 acyl-CoA ligase (AMP-forming), exosortase system type 1 associated

Probab=100.00  E-value=1.8e-60  Score=524.67  Aligned_cols=497  Identities=23%  Similarity=0.250  Sum_probs=402.4

Q ss_pred             cHHHHHHHHHHhCCCCCceeeeccccCCCCCceEEeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEeCCchhHHHHHHHHH
Q 006111           43 TAWDIFSMSVQKYPGNRMLGWRPFVDGKFGPYVWKTYKEVYEEVLQIVSALRASGAEPGCRVGIYGANCPQWVEAMEACN  122 (660)
Q Consensus        43 ti~~~l~~~a~~~pd~~a~~~~~~~d~~~~~~~~~Ty~ql~~~v~~lA~~L~~~Gl~~gd~V~l~~~n~~e~~~~~lA~~  122 (660)
                      ++.++|...++++|+++|+.+.   +      +++||+||.+++.++|++|.+.|+.+||+|+++++|++++++++|||+
T Consensus         1 ~~~~~~~~~~~~~p~~~a~~~~---~------~~~ty~~l~~~v~~~a~~l~~~g~~~~~~V~i~~~n~~~~~~~~lA~~   71 (515)
T TIGR03098         1 LLHHLLEDAAARLPDATALVHH---D------RTLTYAALSERVLALASGLRGLGLARGERVAIYLDKRLETVTAMFGAA   71 (515)
T ss_pred             CHHHHHHHHHHHCCCCeEEEEC---C------ceeeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEcCCCHHHHHHHHHHH
Confidence            4789999999999999999875   3      479999999999999999999999999999999999999999999999


Q ss_pred             hCCCeEEecCCCCChhHHHHHHhcccceEEEEccchhhhhhccccccccCccEEEEecCCcHHHHHHHhhCCcceeeHHH
Q 006111          123 ALSLICVPLYDTLGPGAVNFILDHAEIDFVFVQDKKVKELLSPDCRSAQRLRVMVCFTSLTAEQKEMAVQTGIKPYSWDE  202 (660)
Q Consensus       123 ~~G~~~vpl~~~~~~~~l~~~l~~~~~~~ii~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~  202 (660)
                      ++|++++|+++..+.+++..+++.++++++|++......+..... .......++.+++.....     ........|.+
T Consensus        72 ~~G~~~v~l~~~~~~~~~~~~l~~~~~~~~i~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~  145 (515)
T TIGR03098        72 LAGGVFVPINPLLKAEQVAHILADCNVRLLVTSSERLDLLHPALP-GCHDLRTLILVGEPAHAS-----EGGGESPSWPK  145 (515)
T ss_pred             hcCEEEEeCCCCCCHHHHHHHHHcCCCeEEEEccchhhhhHhhhh-cccccceEEEecCccccc-----CCccccccHHH
Confidence            999999999999999999999999999999998876654433222 122334454444322100     01122335665


Q ss_pred             HHhcCccCCccCCCCCCCceEEEEecCCCCCCCceeeecchhHHHHhhhhhhhcccccCCCCCCcEEEEecChhHHHHHH
Q 006111          203 FLHLGKVNEMEILPPQPFNICTIMYTSGTSGDPKGVVLTHETIATFVSGVDLFLDQFEDKMTVDDVYLSFLPLAHILDRV  282 (660)
Q Consensus       203 ~~~~~~~~~~~~~~~~~~~~~~i~~TSGTTG~pK~v~~th~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~pl~~~~g~~  282 (660)
                      +.....  .....+...+++++++|||||||.||+|.+||.++...+......+     .+..+|++++.+|++|.+++.
T Consensus       146 ~~~~~~--~~~~~~~~~~~~~~i~~TSGTTG~PK~v~~t~~~l~~~~~~~~~~~-----~~~~~d~~l~~~p~~~~~~~~  218 (515)
T TIGR03098       146 LLALGD--ADPPHPVIDSDMAAILYTSGSTGRPKGVVLSHRNLVAGAQSVATYL-----ENRPDDRLLAVLPLSFDYGFN  218 (515)
T ss_pred             hhcccc--ccccCCCCcCCeEEEEECCCCCCCCceEEEecHHHHHHHHHHHHHh-----CCCcccEEEEECchhhHhHHH
Confidence            554321  1122334568999999999999999999999999998887776665     688899999999999999988


Q ss_pred             HHHHHhhcCcEEEEecC-ChhhHHHHhhhhcCeEEEechHHHHHHHHHHHHHHHhhchHHHHHHHHHHHHHHHHHhhCCC
Q 006111          283 IEEYFFRRGASVGYYHG-DLNALRDDLMELKPTLLAGVPRVFEKIHEGIKKALEELRPLRRRIFDALYKYKLAWMNMGYK  361 (660)
Q Consensus       283 ~~l~~l~~G~~~v~~~~-~~~~~~~~i~~~~~t~~~~~p~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  361 (660)
                      ..+.++..|+++++.+. ++..+++.++++++|++.++|+++..|.+....                             
T Consensus       219 ~~~~~l~~G~~~~~~~~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~-----------------------------  269 (515)
T TIGR03098       219 QLTTAFYVGATVVLHDYLLPRDVLKALEKHGITGLAAVPPLWAQLAQLDWP-----------------------------  269 (515)
T ss_pred             HHHHHHHcCCEEEEcCCCCHHHHHHHHHHcCCceEecChHHHHHHHhcccC-----------------------------
Confidence            88889999999998876 899999999999999999999999887542100                             


Q ss_pred             CCCcchhhhHHHHHHHHHHhCCcEeEEEEccCCCCHHHHHHHHHhc-CCceeeecCCCCCCCceecccCCCccccCccCC
Q 006111          362 QREASPLADLLAFRKVKARLGGRLRLVISGGAPLSTEVEEFLRVTC-CAFLVQGYGLTETCGPTTVCFPDEMCMVGTAGP  440 (660)
Q Consensus       362 ~~~~~~~~~~~~~~~~~~~~~~~lr~i~~~G~~l~~~~~~~~~~~~-~~~v~~~YG~tE~~~~~~~~~~~~~~~~~~~G~  440 (660)
                          .             ...+++|.++++|+++++++.+.+++.+ +..+++.||+||++..............+++|.
T Consensus       270 ----~-------------~~~~~l~~~~~~g~~l~~~~~~~~~~~~~~~~~~~~YG~tE~~~~~~~~~~~~~~~~~~vG~  332 (515)
T TIGR03098       270 ----E-------------SAAPSLRYLTNSGGAMPRATLSRLRSFLPNARLFLMYGLTEAFRSTYLPPEEVDRRPDSIGK  332 (515)
T ss_pred             ----C-------------CCccceEEEEecCCcCCHHHHHHHHHHCCCCeEeeeeccccccceEecccccccCCCCCcce
Confidence                0             0114899999999999999999999988 688999999999987655443333344589999


Q ss_pred             CccCeeEEeeecCCCCCCCCCCCCCceEEEccCCcccccCCCchhhhhccc------------CCccccCceEEECCCCc
Q 006111          441 VSVYSELRLEEVPEMGYSPLDDPPCGEVCVRGKTLFSGYYKNPDLTRESII------------DGWFHTGDIGQILPNGV  508 (660)
Q Consensus       441 ~~~~~~v~ivd~~~~~~~~~~~~~~Gei~v~g~~~~~gy~~~~~~~~~~~~------------~g~~~TGDl~~~~~~G~  508 (660)
                      |++++++++++ +++..  ++.++.|||+++|+.++.||++++..+...|.            ++||+|||+|+++++|.
T Consensus       333 ~~~~~~~~i~~-~~~~~--~~~~~~Gel~v~g~~~~~gy~~~~~~~~~~~~~~~~~~~~~~~~~~~~~TGD~~~~~~~g~  409 (515)
T TIGR03098       333 AIPNAEVLVLR-EDGSE--CAPGEEGELVHRGALVAMGYWNDPEKTAERFRPLPPRPGELHLPELAVWSGDTVRRDEEGF  409 (515)
T ss_pred             ecCCCEEEEEC-CCCCC--CCCCCceEEEEcCchhhccccCCchhhhhhhhccCCccccccccccceeccceEEEcCCce
Confidence            99999999999 66554  34568999999999999999999988876652            34899999999999999


Q ss_pred             EEEEeccCCeeEcCCCeeecchhHHHHHhcCcCcceEEEEecCCC---CeEEEEEEcChhhHHHHHHHCCCCCcHHHHhc
Q 006111          509 VKIIDRKKNLIKISQGEYVALEYLENVYCVAPIIEDIWVYGDSLK---SMLVAVVVPCEEDTKKWAYSNGHAGSFLELCS  585 (660)
Q Consensus       509 l~~~GR~~d~i~~~~G~~v~~~~iE~~l~~~p~V~~~~V~~~~~~---~~~~a~v~~~~~~~~~~~~~~~~~~~~~~~~~  585 (660)
                      +++.||.+|+|++ +|.+|+|.+||++|.+||.|.+|+|++.+++   +.++++++...+..          .      .
T Consensus       410 l~~~GR~~d~i~~-~G~~v~~~eiE~~l~~~~~v~~~~v~~~~~~~~g~~~~~~~~~~~~~~----------~------~  472 (515)
T TIGR03098       410 LYFVGRRDEMIKT-SGYRVSPTEVEEVAYATGLVAEAVAFGVPDPTLGQAIVLVVTPPGGEE----------L------D  472 (515)
T ss_pred             EEEEeccccceec-CCEEeCHHHHHHHHhcCCCeeEEEEEeccCcccCceEEEEEEeCCCCC----------C------C
Confidence            9999999999997 7999999999999999999999999997654   47788877654320          0      1


Q ss_pred             cHHHHHHHHHHHHHHHHhCCCCCceeeeEEEEecCCCCCCCCccccccccchHHHHH
Q 006111          586 LVQLQNYILSELKNAAERNKLRGFEHIKGVILDPRPFDMERDLVTATLKKKRNKLLI  642 (660)
Q Consensus       586 ~~~~~~~~~~~l~~~~~~~~l~~~~~p~~i~~~~~~~~~~~~P~t~~GKv~R~~l~~  642 (660)
                              .++++++++ ++|+.+++|..+++++      .+|+|++||++|++|++
T Consensus       473 --------~~~l~~~l~-~~l~~~~~p~~i~~v~------~iP~t~~GK~~r~~L~~  514 (515)
T TIGR03098       473 --------RAALLAECR-ARLPNYMVPALIHVRQ------ALPRNANGKIDRKALAA  514 (515)
T ss_pred             --------HHHHHHHHH-hhCccccCCCEEEEec------cCCCCCCCCCcHHHhcc
Confidence                    123444443 6789999999999874      35899999999999864

This group of proteins contains an AMP-binding domain (pfam00501) associated with acyl CoA-ligases. These proteins are generally found in genomes containing the exosortase/PEP-CTERM protein expoert system, specifically the type 1 variant of this system described by the Genome Property GenProp0652. When found in this context they are invariably present next to a decarboxylase enzyme. A number of sequences from Burkholderia species also hit this model, but the genomic context is obviously different. The hypothesis of a constant substrate for this family is only strong where the exosortase context is present.

>PRK12492 long-chain-fatty-acid--CoA ligase; Provisional

Probab=100.00  E-value=2.4e-60  Score=527.94  Aligned_cols=511  Identities=23%  Similarity=0.306  Sum_probs=393.6

Q ss_pred             CCcHHHHHHHHHHhCCCCCceeeeccccCCCCCceEEeHHHHHHHHHHHHHHHHHc-CCCCCCEEEEEeCCchhHHHHHH
Q 006111           41 LNTAWDIFSMSVQKYPGNRMLGWRPFVDGKFGPYVWKTYKEVYEEVLQIVSALRAS-GAEPGCRVGIYGANCPQWVEAME  119 (660)
Q Consensus        41 ~~ti~~~l~~~a~~~pd~~a~~~~~~~d~~~~~~~~~Ty~ql~~~v~~lA~~L~~~-Gl~~gd~V~l~~~n~~e~~~~~l  119 (660)
                      ..++.+.|.++++++|+++|+.+.    +     +.+||.||.++++++|.+|.+. |+++||+|+++++|++++++++|
T Consensus        23 ~~~~~~~l~~~~~~~p~~~a~~~~----~-----~~~Ty~~l~~~~~~~a~~L~~~~gi~~gd~V~i~~~n~~e~~~~~l   93 (562)
T PRK12492         23 YKSVVEVFERSCKKFADRPAFSNL----G-----VTLSYAELERHSAAFAAYLQQHTDLVPGDRIAVQMPNVLQYPIAVF   93 (562)
T ss_pred             cCcHHHHHHHHHHhCCCCeeEecC----C-----ceeeHHHHHHHHHHHHHHHHHhcCCCCCCEEEEECCCCHHHHHHHH
Confidence            468999999999999999999764    2     4799999999999999999985 99999999999999999999999


Q ss_pred             HHHhCCCeEEecCCCCChhHHHHHHhcccceEEEEccchhhhhhccccccccCccEEEEec--CCcHHHHHH--------
Q 006111          120 ACNALSLICVPLYDTLGPGAVNFILDHAEIDFVFVQDKKVKELLSPDCRSAQRLRVMVCFT--SLTAEQKEM--------  189 (660)
Q Consensus       120 A~~~~G~~~vpl~~~~~~~~l~~~l~~~~~~~ii~~~~~~~~~~~~~~~~~~~~~~i~~~~--~~~~~~~~~--------  189 (660)
                      ||+++|++++|+++.++.+++..+++.++++++++++............  .....++...  +.......+        
T Consensus        94 a~~~~G~v~v~~~~~~~~~~l~~~l~~~~~~~~i~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  171 (562)
T PRK12492         94 GALRAGLIVVNTNPLYTAREMRHQFKDSGARALVYLNMFGKLVQEVLPD--TGIEYLIEAKMGDLLPAAKGWLVNTVVDK  171 (562)
T ss_pred             HHHHcCeEEeccCccCCHHHHHHHHhccCceEEEeccccchHHHHhhhc--cCceEEEeechhhccccccchhccccccc
Confidence            9999999999999999999999999999999999987544333221110  0001111000  000000000        


Q ss_pred             -----HhhCCcceeeHHHHHhcCccCCccCCCCCCCceEEEEecCCCCCCCceeeecchhHHHHhhhhhhhcccccC---
Q 006111          190 -----AVQTGIKPYSWDEFLHLGKVNEMEILPPQPFNICTIMYTSGTSGDPKGVVLTHETIATFVSGVDLFLDQFED---  261 (660)
Q Consensus       190 -----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~TSGTTG~pK~v~~th~~l~~~~~~~~~~~~~~~~---  261 (660)
                           .........+|.++............+...+++++|+|||||||.||+|+++|+++...+......+.....   
T Consensus       172 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~i~~TSGTTG~PKgv~~s~~~l~~~~~~~~~~~~~~~~~~~  251 (562)
T PRK12492        172 VKKMVPAYHLPQAVPFKQALRQGRGLSLKPVPVGLDDIAVLQYTGGTTGLAKGAMLTHGNLVANMLQVRACLSQLGPDGQ  251 (562)
T ss_pred             ccccccccCCcccccHHHHHhccCCCCCCCCCCCcCCeEEEEeCCCCCCCCceEEEechhHHHHHHHHHHHHhccccccc
Confidence                 000001123455554433222222234567899999999999999999999999998776655443321110   


Q ss_pred             -CCCC-CcEEEEecChhHHHHHHH-HHHHhhcCcEEEEecC--ChhhHHHHhhhhcCeEEEechHHHHHHHHHHHHHHHh
Q 006111          262 -KMTV-DDVYLSFLPLAHILDRVI-EEYFFRRGASVGYYHG--DLNALRDDLMELKPTLLAGVPRVFEKIHEGIKKALEE  336 (660)
Q Consensus       262 -~~~~-~~~~l~~~pl~~~~g~~~-~l~~l~~G~~~v~~~~--~~~~~~~~i~~~~~t~~~~~p~~~~~l~~~~~~~~~~  336 (660)
                       .... .++++..+|++|.+++.. ++..+..|.+.++...  ++..++..++++++|+++++|+++..+.+...     
T Consensus       252 ~~~~~~~~~~~~~~pl~~~~g~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~i~~~~~t~~~~~p~~~~~l~~~~~-----  326 (562)
T PRK12492        252 PLMKEGQEVMIAPLPLYHIYAFTANCMCMMVSGNHNVLITNPRDIPGFIKELGKWRFSALLGLNTLFVALMDHPG-----  326 (562)
T ss_pred             ccccCCCeEEEEecchHHHHHHHHHHHHHhhcCceEEEecCCcCHHHHHHHHHHhCCceeeCcHHHHHHHHhCcC-----
Confidence             0222 357789999999999875 4555778887766543  88999999999999999999999988764211     


Q ss_pred             hchHHHHHHHHHHHHHHHHHhhCCCCCCcchhhhHHHHHHHHHHhCCcEeEEEEccCCCCHHHHHHHHHhcCCceeeecC
Q 006111          337 LRPLRRRIFDALYKYKLAWMNMGYKQREASPLADLLAFRKVKARLGGRLRLVISGGAPLSTEVEEFLRVTCCAFLVQGYG  416 (660)
Q Consensus       337 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lr~i~~~G~~l~~~~~~~~~~~~~~~v~~~YG  416 (660)
                                                      ....++        +++|.+++||+++++.+.+.|.+.+++++++.||
T Consensus       327 --------------------------------~~~~~~--------~~lr~~~~gG~~~~~~~~~~~~~~~~~~~~~~YG  366 (562)
T PRK12492        327 --------------------------------FKDLDF--------SALKLTNSGGTALVKATAERWEQLTGCTIVEGYG  366 (562)
T ss_pred             --------------------------------cccccc--------cceeEEEeccccCCHHHHHHHHHHhCCceeeccC
Confidence                                            001111        4899999999999999999999988999999999


Q ss_pred             CCCCCCceecccCCCccccCccCCCccCeeEEeeecCCCCCCCCCCCCCceEEEccCCcccccCCCchhhhhcc-cCCcc
Q 006111          417 LTETCGPTTVCFPDEMCMVGTAGPVSVYSELRLEEVPEMGYSPLDDPPCGEVCVRGKTLFSGYYKNPDLTRESI-IDGWF  495 (660)
Q Consensus       417 ~tE~~~~~~~~~~~~~~~~~~~G~~~~~~~v~ivd~~~~~~~~~~~~~~Gei~v~g~~~~~gy~~~~~~~~~~~-~~g~~  495 (660)
                      +||++.+++..........+++|.|+++++++|+| +++..  +..|+.|||+++|+.++.||+++++.+.+.| .+|||
T Consensus       367 ~tE~~~~~~~~~~~~~~~~~~~G~p~~~~~v~ivd-~~~~~--~~~g~~Gel~v~g~~~~~gY~~~~~~t~~~~~~~g~~  443 (562)
T PRK12492        367 LTETSPVASTNPYGELARLGTVGIPVPGTALKVID-DDGNE--LPLGERGELCIKGPQVMKGYWQQPEATAEALDAEGWF  443 (562)
T ss_pred             ccccCceeeecCCcccccCCccceecCCCEEEEEC-CCCCC--CCCCCceEEEEeCCccccccccCchhhhhcccCCCce
Confidence            99999877665544433457899999999999999 76654  4456799999999999999999999999888 68999


Q ss_pred             ccCceEEECCCCcEEEEeccCCeeEcCCCeeecchhHHHHHhcCcCcceEEEEecCCC---CeEEEEEEcChhhHHHHHH
Q 006111          496 HTGDIGQILPNGVVKIIDRKKNLIKISQGEYVALEYLENVYCVAPIIEDIWVYGDSLK---SMLVAVVVPCEEDTKKWAY  572 (660)
Q Consensus       496 ~TGDl~~~~~~G~l~~~GR~~d~i~~~~G~~v~~~~iE~~l~~~p~V~~~~V~~~~~~---~~~~a~v~~~~~~~~~~~~  572 (660)
                      +|||+|+++++|.+++.||.+|+|++ +|++|+|.+||+.|.+||.|.+|+|++.++.   +.+++++++.+..      
T Consensus       444 ~TGD~g~~~~~G~l~i~GR~~~~i~~-~G~~i~~~eIE~~l~~~~~v~~~~v~~~~~~~~~~~~~~~v~~~~~~------  516 (562)
T PRK12492        444 KTGDIAVIDPDGFVRIVDRKKDLIIV-SGFNVYPNEIEDVVMAHPKVANCAAIGVPDERSGEAVKLFVVARDPG------  516 (562)
T ss_pred             ecCcEEEECCCCeEEEecccCCeEEE-CCEEECHHHHHHHHHhCCCeeEEEEEeccCCCCCceEEEEEEeCCCC------
Confidence            99999999999999999999999997 7999999999999999999999999997654   4677787765421      


Q ss_pred             HCCCCCcHHHHhccHHHHHHHHHHHHHHHHhCCCCCceeeeEEEEecCCCCCCCCccccccccchHHHHHH
Q 006111          573 SNGHAGSFLELCSLVQLQNYILSELKNAAERNKLRGFEHIKGVILDPRPFDMERDLVTATLKKKRNKLLIY  643 (660)
Q Consensus       573 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~l~~~~~p~~i~~~~~~~~~~~~P~t~~GKv~R~~l~~~  643 (660)
                         .        .        .+++++++. .+|+.|.+|..+.+++      .+|+|++||++|++|++.
T Consensus       517 ---~--------~--------~~~i~~~~~-~~l~~~~~P~~i~~~~------~~P~t~~GK~~r~~L~~~  561 (562)
T PRK12492        517 ---L--------S--------VEELKAYCK-ENFTGYKVPKHIVLRD------SLPMTPVGKILRRELRDI  561 (562)
T ss_pred             ---C--------C--------HHHHHHHHH-HhcccccCCcEEEEec------cCCCCCCCceeHHHHHhh
Confidence               0        1        123444443 6789999999999874      458999999999999864

>PRK06164 acyl-CoA synthetase; Validated

Probab=100.00  E-value=3.5e-60  Score=525.03  Aligned_cols=508  Identities=20%  Similarity=0.223  Sum_probs=396.8

Q ss_pred             CCcHHHHHHHHHHhCCCCCceeeeccccCCCCCceEEeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEeCCchhHHHHHHH
Q 006111           41 LNTAWDIFSMSVQKYPGNRMLGWRPFVDGKFGPYVWKTYKEVYEEVLQIVSALRASGAEPGCRVGIYGANCPQWVEAMEA  120 (660)
Q Consensus        41 ~~ti~~~l~~~a~~~pd~~a~~~~~~~d~~~~~~~~~Ty~ql~~~v~~lA~~L~~~Gl~~gd~V~l~~~n~~e~~~~~lA  120 (660)
                      ..++.++|.+.++++|+++|++..   +      +++||+||.+++.++|..|.+.|+++||+|+++++|++++++++||
T Consensus         9 ~~~l~~~l~~~a~~~p~~~a~~~~---~------~~~Ty~~L~~~~~~~a~~L~~~g~~~g~~V~i~~~n~~~~~~~~la   79 (540)
T PRK06164          9 ADTLASLLDAHARARPDAVALIDE---D------RPLSRAELRALVDRLAAWLAAQGVRRGDRVAVWLPNCIEWVVLFLA   79 (540)
T ss_pred             CCCHHHHHHHHHHhCCCCeEEecC---C------CcccHHHHHHHHHHHHHHHHHhCCCCCCEEEEEcCCcHHHHHHHHH
Confidence            458999999999999999999854   2      4799999999999999999999999999999999999999999999


Q ss_pred             HHhCCCeEEecCCCCChhHHHHHHhcccceEEEEccchhh-----hhhccccccccCccEEEEecCCcHHHHHHHhhCCc
Q 006111          121 CNALSLICVPLYDTLGPGAVNFILDHAEIDFVFVQDKKVK-----ELLSPDCRSAQRLRVMVCFTSLTAEQKEMAVQTGI  195 (660)
Q Consensus       121 ~~~~G~~~vpl~~~~~~~~l~~~l~~~~~~~ii~~~~~~~-----~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~  195 (660)
                      |+++|++++|+++..+.+++..+++.++++++|++.+...     .+.............++.++......      ...
T Consensus        80 ~~~~G~~~v~l~~~~~~~~l~~~i~~~~~~~ii~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~~~  153 (540)
T PRK06164         80 CARLGATVIAVNTRYRSHEVAHILGRGRARWLVVWPGFKGIDFAAILAAVPPDALPPLRAIAVVDDAADAT------PAP  153 (540)
T ss_pred             HHHhCcEEEecCCCCCcHHHHHHHHhcCccEEEEccccccccHHHHhhcccccccCCcceEEEeccCcccC------CCC
Confidence            9999999999999999999999999999999999876421     11111111122334455444211000      000


Q ss_pred             ceeeHHHHHhcCccCCc---cCCCCCCCceEEEEecCCCCCCCceeeecchhHHHHhhhhhhhcccccCCCCCCcEEEEe
Q 006111          196 KPYSWDEFLHLGKVNEM---EILPPQPFNICTIMYTSGTSGDPKGVVLTHETIATFVSGVDLFLDQFEDKMTVDDVYLSF  272 (660)
Q Consensus       196 ~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~i~~TSGTTG~pK~v~~th~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~  272 (660)
                      ....+.++.........   ......++++++++|||||||.||+|.++|+++...+..+...+     ++..++++++.
T Consensus       154 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~TSGtTG~pK~v~~s~~~l~~~~~~~~~~~-----~~~~~~~~l~~  228 (540)
T PRK06164        154 APGARVQLFALPDPAPPAAAGERAADPDAGALLFTTSGTTSGPKLVLHRQATLLRHARAIARAY-----GYDPGAVLLAA  228 (540)
T ss_pred             CcccccccccccccCCcccccccCCCCCceEEEEECCCCCCCCcEEEEehHHHHHHHHHHHHhc-----CCCCCCEEEEc
Confidence            00011111111100000   01233568999999999999999999999999999888877777     78899999999


Q ss_pred             cChhHHHHHHHHHHHhhcCcEEEEecC-ChhhHHHHhhhhcCeEEEechHHHHHHHHHHHHHHHhhchHHHHHHHHHHHH
Q 006111          273 LPLAHILDRVIEEYFFRRGASVGYYHG-DLNALRDDLMELKPTLLAGVPRVFEKIHEGIKKALEELRPLRRRIFDALYKY  351 (660)
Q Consensus       273 ~pl~~~~g~~~~l~~l~~G~~~v~~~~-~~~~~~~~i~~~~~t~~~~~p~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~  351 (660)
                      +|++|.+|+...+.++..|+++++.+. ++..+++.|+++++|+++++|.++..+.+... .                  
T Consensus       229 ~p~~~~~g~~~~~~~l~~G~~~~~~~~~~~~~~~~~l~~~~~t~~~~~p~~l~~l~~~~~-~------------------  289 (540)
T PRK06164        229 LPFCGVFGFSTLLGALAGGAPLVCEPVFDAARTARALRRHRVTHTFGNDEMLRRILDTAG-E------------------  289 (540)
T ss_pred             CCchhHHHHHHHHHHHhcCceEEecCCCCHHHHHHHHHHhCCeeecCCHHHHHHHHHhhc-c------------------
Confidence            999999999888888999999988876 89999999999999999999999998876410 0                  


Q ss_pred             HHHHHhhCCCCCCcchhhhHHHHHHHHHHhCCcEeEEEEcc-CCCCHHHHHHHHHhcCCceeeecCCCCCCCceecccCC
Q 006111          352 KLAWMNMGYKQREASPLADLLAFRKVKARLGGRLRLVISGG-APLSTEVEEFLRVTCCAFLVQGYGLTETCGPTTVCFPD  430 (660)
Q Consensus       352 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lr~i~~~G-~~l~~~~~~~~~~~~~~~v~~~YG~tE~~~~~~~~~~~  430 (660)
                                         ..        ..++++.+.++| ......+.+++... |+++++.||+||++.+++.....
T Consensus       290 -------------------~~--------~~~~l~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~YG~tE~~~~~~~~~~~  341 (540)
T PRK06164        290 -------------------RA--------DFPSARLFGFASFAPALGELAALARAR-GVPLTGLYGSSEVQALVALQPAT  341 (540)
T ss_pred             -------------------cC--------CCcceeeeeeccCCcchHHHHHHHhhc-CCceecceeeccccceeeccCCC
Confidence                               00        113788877665 55666677777665 89999999999999876655432


Q ss_pred             C--ccccCccCCCc-cCeeEEeeecCCCCCCCCCCCCCceEEEccCCcccccCCCchhhhhcc-cCCccccCceEEECCC
Q 006111          431 E--MCMVGTAGPVS-VYSELRLEEVPEMGYSPLDDPPCGEVCVRGKTLFSGYYKNPDLTRESI-IDGWFHTGDIGQILPN  506 (660)
Q Consensus       431 ~--~~~~~~~G~~~-~~~~v~ivd~~~~~~~~~~~~~~Gei~v~g~~~~~gy~~~~~~~~~~~-~~g~~~TGDl~~~~~~  506 (660)
                      .  .....+.|.++ +++.++++| ++++ .+++.|+.|||||+|++++.||+++++.+...| .+|||+|||+|++|++
T Consensus       342 ~~~~~~~~~~g~~~~~~~~~~i~d-~~~~-~~~~~g~~Gel~v~g~~~~~gY~~~~~~t~~~~~~~~~~~TGDl~~~~~~  419 (540)
T PRK06164        342 DPVSVRIEGGGRPASPEARVRARD-PQDG-ALLPDGESGEIEIRAPSLMRGYLDNPDATARALTDDGYFRTGDLGYTRGD  419 (540)
T ss_pred             CCCcceeccCccccCCCeEEEEec-CCCC-cCCCCCCeeEEEEecccccccccCCchhhhhcccCCCceecCCeEEEcCC
Confidence            2  12224567665 799999999 5444 345667899999999999999999999999988 6899999999999999


Q ss_pred             CcEEEEeccCCeeEcCCCeeecchhHHHHHhcCcCcceEEEEecCCC--CeEEEEEEcChhhHHHHHHHCCCCCcHHHHh
Q 006111          507 GVVKIIDRKKNLIKISQGEYVALEYLENVYCVAPIIEDIWVYGDSLK--SMLVAVVVPCEEDTKKWAYSNGHAGSFLELC  584 (660)
Q Consensus       507 G~l~~~GR~~d~i~~~~G~~v~~~~iE~~l~~~p~V~~~~V~~~~~~--~~~~a~v~~~~~~~~~~~~~~~~~~~~~~~~  584 (660)
                      |.+++.||.+|+|++ +|++|+|.+||+.|.+||+|.+++|++.+..  ..+++++++.++..        .        
T Consensus       420 g~l~~~GR~~~~i~~-~G~~i~p~eIE~~l~~~~~v~~~~v~~~~~~~~~~~~~~vv~~~~~~--------~--------  482 (540)
T PRK06164        420 GQFVYQTRMGDSLRL-GGFLVNPAEIEHALEALPGVAAAQVVGATRDGKTVPVAFVIPTDGAS--------P--------  482 (540)
T ss_pred             ceEEEEeecCCeEEE-CCEEcCHHHHHHHHHhCCCceeEEEEecCCCCceeEEEEEEeCCCCC--------C--------
Confidence            999999999999997 7999999999999999999999999986532  47888888866420        0        


Q ss_pred             ccHHHHHHHHHHHHHHHHhCCCCCceeeeEEEEecCCCCCCCCcccccc---ccchHHHHHHHHHHHH
Q 006111          585 SLVQLQNYILSELKNAAERNKLRGFEHIKGVILDPRPFDMERDLVTATL---KKKRNKLLIYYQVEID  649 (660)
Q Consensus       585 ~~~~~~~~~~~~l~~~~~~~~l~~~~~p~~i~~~~~~~~~~~~P~t~~G---Kv~R~~l~~~~~~~i~  649 (660)
                      .        .+++.++++ .+||.|++|+.+.+++      .+|+|++|   |++|++|++++++.+.
T Consensus       483 ~--------~~~l~~~~~-~~l~~~~~P~~i~~~~------~~P~t~~g~~~Ki~r~~L~~~~~~~~~  535 (540)
T PRK06164        483 D--------EAGLMAACR-EALAGFKVPARVQVVE------AFPVTESANGAKIQKHRLREMAQARLA  535 (540)
T ss_pred             C--------HHHHHHHHH-hhcccCcCCcEEEEec------CCCCCCCCccccccHHHHHHHHHHhhh
Confidence            1        123444444 6799999999988874      46899999   9999999988765543

>PRK07867 acyl-CoA synthetase; Validated

Probab=100.00  E-value=6.1e-60  Score=519.86  Aligned_cols=485  Identities=19%  Similarity=0.218  Sum_probs=384.2

Q ss_pred             CCCCcHHHHHHHHHHhCCCCCceeeeccccCCCCCceEEeHHHHHHHHHHHHHHHHHc-CCCCCCEEEEEeCCchhHHHH
Q 006111           39 SDLNTAWDIFSMSVQKYPGNRMLGWRPFVDGKFGPYVWKTYKEVYEEVLQIVSALRAS-GAEPGCRVGIYGANCPQWVEA  117 (660)
Q Consensus        39 ~~~~ti~~~l~~~a~~~pd~~a~~~~~~~d~~~~~~~~~Ty~ql~~~v~~lA~~L~~~-Gl~~gd~V~l~~~n~~e~~~~  117 (660)
                      ++..++.+.|...+.  ++++++++.    +     +++||.||.++++++|.+|++. |+++|++|+++++|+++++++
T Consensus         2 ~~~~~~~~~l~~~a~--~~~~a~~~~----~-----~~~Ty~el~~~v~~lA~~L~~~~~~~~~~~V~i~~~n~~~~~~~   70 (529)
T PRK07867          2 SSAPTVAELLLPLAE--DDDRGLYFE----D-----SFTSWREHIRGSAARAAALRARLDPTRPPHVGVLLDNTPEFSLL   70 (529)
T ss_pred             CccccHHHHHHHhcc--cCCceEEEC----C-----cEEeHHHHHHHHHHHHHHHHHhhCCCCCCEEEEECCCCHHHHHH
Confidence            345689999988775  789998865    3     5899999999999999999997 899999999999999999999


Q ss_pred             HHHHHhCCCeEEecCCCCChhHHHHHHhcccceEEEEccchhhhhhccccccccCccEEEEecCCcHHHHHHHhhCCcce
Q 006111          118 MEACNALSLICVPLYDTLGPGAVNFILDHAEIDFVFVQDKKVKELLSPDCRSAQRLRVMVCFTSLTAEQKEMAVQTGIKP  197 (660)
Q Consensus       118 ~lA~~~~G~~~vpl~~~~~~~~l~~~l~~~~~~~ii~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~  197 (660)
                      ++||+++|++++|+++.++.+++..+++.++++++|+++.....+....    ... .++..+.                
T Consensus        71 ~lA~~~~G~~~v~l~~~~~~~~l~~~l~~~~~~~li~~~~~~~~~~~~~----~~~-~~~~~~~----------------  129 (529)
T PRK07867         71 LGAAALSGIVPVGLNPTRRGAALARDIAHADCQLVLTESAHAELLDGLD----PGV-RVINVDS----------------  129 (529)
T ss_pred             HHHHHhcCCEEEEecCCCChHHHHHHHHhCCCeEEEECHhHHHHHHhhc----cCc-eEEEecc----------------
Confidence            9999999999999999999999999999999999999987765432211    111 1222221                


Q ss_pred             eeHHHHHhcCccCCccCCCCCCCceEEEEecCCCCCCCceeeecchhHHHHhhhhhhhcccccCCCCCCcEEEEecChhH
Q 006111          198 YSWDEFLHLGKVNEMEILPPQPFNICTIMYTSGTSGDPKGVVLTHETIATFVSGVDLFLDQFEDKMTVDDVYLSFLPLAH  277 (660)
Q Consensus       198 ~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~TSGTTG~pK~v~~th~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~pl~~  277 (660)
                      ..|.+++..............++++++++|||||||.||+|+++|+++......+...+     ++..+|+++..+|++|
T Consensus       130 ~~~~~~l~~~~~~~~~~~~~~~~~~~~i~~TSGTTG~PKgv~~s~~~l~~~~~~~~~~~-----~~~~~d~~l~~~pl~~  204 (529)
T PRK07867        130 PAWADELAAHRDAEPPFRVADPDDLFMLIFTSGTSGDPKAVRCTHRKVASAGVMLAQRF-----GLGPDDVCYVSMPLFH  204 (529)
T ss_pred             ccHHHHhcccCCCCCCcccCCccceEEEEECCCCCCCCcEEEecHHHHHHHHHHHHHhh-----CCCcccEEEEecchhH
Confidence            12333333221111222345679999999999999999999999999988887776666     7888999999999999


Q ss_pred             HHHHHH-HHHHhhcCcEEEEecC-ChhhHHHHhhhhcCeEEEechHHHHHHHHHHHHHHHhhchHHHHHHHHHHHHHHHH
Q 006111          278 ILDRVI-EEYFFRRGASVGYYHG-DLNALRDDLMELKPTLLAGVPRVFEKIHEGIKKALEELRPLRRRIFDALYKYKLAW  355 (660)
Q Consensus       278 ~~g~~~-~l~~l~~G~~~v~~~~-~~~~~~~~i~~~~~t~~~~~p~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  355 (660)
                      .+++.. .+.++..|+++++.+. ++..+++.++++++|++.++|+.+..++......                      
T Consensus       205 ~~~~~~~~~~~l~~G~~~~~~~~~~~~~~~~~i~~~~vt~~~~~p~~~~~ll~~~~~~----------------------  262 (529)
T PRK07867        205 SNAVMAGWAVALAAGASIALRRKFSASGFLPDVRRYGATYANYVGKPLSYVLATPERP----------------------  262 (529)
T ss_pred             HHHHHHHHHHHHhcCceEEecCCCCHHHHHHHHHHhCCeEEeccHHHHHHHHhCCCcc----------------------
Confidence            998876 4567889999988765 8999999999999999999999988775421100                      


Q ss_pred             HhhCCCCCCcchhhhHHHHHHHHHHhCCcEeEEEEccCCCCHHHHHHHHHhcCCceeeecCCCCCCCceecccCCCcccc
Q 006111          356 MNMGYKQREASPLADLLAFRKVKARLGGRLRLVISGGAPLSTEVEEFLRVTCCAFLVQGYGLTETCGPTTVCFPDEMCMV  435 (660)
Q Consensus       356 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lr~i~~~G~~l~~~~~~~~~~~~~~~v~~~YG~tE~~~~~~~~~~~~~~~~  435 (660)
                                 .            ...+++|. ++||+.+++.. ..+.+.+|+++++.||+||+++.+...+.   ...
T Consensus       263 -----------~------------~~~~~lr~-~~gg~~~~~~~-~~~~~~~g~~l~~~YG~TE~~~~~~~~~~---~~~  314 (529)
T PRK07867        263 -----------D------------DADNPLRI-VYGNEGAPGDI-ARFARRFGCVVVDGFGSTEGGVAITRTPD---TPP  314 (529)
T ss_pred             -----------c------------ccccceEE-EecCCCChHHH-HHHHHHhCCcEEEeecccccccccccCCC---CCC
Confidence                       0            00136774 56888887765 56666779999999999999876553322   233


Q ss_pred             CccCCCccCeeEEeeecCCCCCCCCCCCC------------CceEEE-ccCCcccccCCCchhhhhcccCCccccCceEE
Q 006111          436 GTAGPVSVYSELRLEEVPEMGYSPLDDPP------------CGEVCV-RGKTLFSGYYKNPDLTRESIIDGWFHTGDIGQ  502 (660)
Q Consensus       436 ~~~G~~~~~~~v~ivd~~~~~~~~~~~~~------------~Gei~v-~g~~~~~gy~~~~~~~~~~~~~g~~~TGDl~~  502 (660)
                      +++|.++++  +++++.+.+..  +..++            .|||++ +|++++.||+++++.+...|.+|||+|||+|+
T Consensus       315 ~~~g~~~~~--~~i~~~~~~~~--~~~g~~~~~~~~~~~~~~Gel~i~~g~~~~~gy~~~~~~~~~~~~~g~~~TGD~~~  390 (529)
T PRK07867        315 GALGPLPPG--VAIVDPDTGTE--CPPAEDADGRLLNADEAIGELVNTAGPGGFEGYYNDPEADAERMRGGVYWSGDLAY  390 (529)
T ss_pred             CCcCCCCCC--EEEEECCCCCC--CCCCccccccccccCCcceEEEEecCCcccccccCChHhhhhhhcCCeEeeccEEE
Confidence            789999998  67777233333  33344            899999 99999999999999999999999999999999


Q ss_pred             ECCCCcEEEEeccCCeeEcCCCeeecchhHHHHHhcCcCcceEEEEecCCC---CeEEEEEEcChhhHHHHHHHCCCCCc
Q 006111          503 ILPNGVVKIIDRKKNLIKISQGEYVALEYLENVYCVAPIIEDIWVYGDSLK---SMLVAVVVPCEEDTKKWAYSNGHAGS  579 (660)
Q Consensus       503 ~~~~G~l~~~GR~~d~i~~~~G~~v~~~~iE~~l~~~p~V~~~~V~~~~~~---~~~~a~v~~~~~~~~~~~~~~~~~~~  579 (660)
                      ++++|.+++.||.+|+|++ +|++|+|.+||++|.+||+|.+|+|++.+++   +.+++++++.++..        .   
T Consensus       391 ~~~~g~l~~~GR~~d~i~~-~G~~v~p~eIE~~l~~~p~V~~~~V~g~~~~~~g~~~~a~vv~~~~~~--------~---  458 (529)
T PRK07867        391 RDADGYAYFAGRLGDWMRV-DGENLGTAPIERILLRYPDATEVAVYAVPDPVVGDQVMAALVLAPGAK--------F---  458 (529)
T ss_pred             EeCCCcEEEeccccCeEEE-CCEEeCHHHHHHHHHhCCCeeEEEEEeccCCCCCeeEEEEEEECCCCC--------C---
Confidence            9999999999999999997 8999999999999999999999999998754   47888888876420        0   


Q ss_pred             HHHHhccHHHHHHHHHHHHHHHHh-CCCCCceeeeEEEEecCCCCCCCCccccccccchHHHHHHHH
Q 006111          580 FLELCSLVQLQNYILSELKNAAER-NKLRGFEHIKGVILDPRPFDMERDLVTATLKKKRNKLLIYYQ  645 (660)
Q Consensus       580 ~~~~~~~~~~~~~~~~~l~~~~~~-~~l~~~~~p~~i~~~~~~~~~~~~P~t~~GKv~R~~l~~~~~  645 (660)
                           +.        ++++++++. ..|+.|++|..+.++      +.+|+|++||++|++|+++..
T Consensus       459 -----~~--------~~l~~~~~~~~~l~~~~~P~~i~~~------~~iP~t~~GKv~r~~L~~~~~  506 (529)
T PRK07867        459 -----DP--------DAFAEFLAAQPDLGPKQWPSYVRVC------AELPRTATFKVLKRQLSAEGV  506 (529)
T ss_pred             -----CH--------HHHHHHHHhhccCCcccCCeEEEEe------eccCCCCCcceeHHHHHHhcC
Confidence                 11        122223322 369999999999987      446899999999999998764

>PLN02479 acetate-CoA ligase

Probab=100.00  E-value=5.9e-60  Score=525.06  Aligned_cols=518  Identities=23%  Similarity=0.291  Sum_probs=390.9

Q ss_pred             CcHHHHHHHHHHhCCCCCceeeeccccCCCCCceEEeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEeCCchhHHHHHHHH
Q 006111           42 NTAWDIFSMSVQKYPGNRMLGWRPFVDGKFGPYVWKTYKEVYEEVLQIVSALRASGAEPGCRVGIYGANCPQWVEAMEAC  121 (660)
Q Consensus        42 ~ti~~~l~~~a~~~pd~~a~~~~~~~d~~~~~~~~~Ty~ql~~~v~~lA~~L~~~Gl~~gd~V~l~~~n~~e~~~~~lA~  121 (660)
                      .++...|...+..+|+++|+.+.   .      .++||.||.++++++|..|.+.|+++||+|+++++|+++++++++||
T Consensus        20 ~~~~~~~~~~~~~~p~~~a~~~~---~------~~~ty~eL~~~~~~lA~~L~~~g~~~gd~V~i~~~n~~~~~~~~la~   90 (567)
T PLN02479         20 LTPLWFLERAAVVHPTRKSVVHG---S------VRYTWAQTYQRCRRLASALAKRSIGPGSTVAVIAPNIPAMYEAHFGV   90 (567)
T ss_pred             cCHHHHHHHHHhhCCCceEEEEC---C------ceeeHHHHHHHHHHHHHHHHHcCCCCCCEEEEECCCcHHHHHHHHHH
Confidence            45889999999999999999864   2      47999999999999999999999999999999999999999999999


Q ss_pred             HhCCCeEEecCCCCChhHHHHHHhcccceEEEEccchhhhhhccccc------cccCccEEEEecCCcHHHHHHHhhCCc
Q 006111          122 NALSLICVPLYDTLGPGAVNFILDHAEIDFVFVQDKKVKELLSPDCR------SAQRLRVMVCFTSLTAEQKEMAVQTGI  195 (660)
Q Consensus       122 ~~~G~~~vpl~~~~~~~~l~~~l~~~~~~~ii~~~~~~~~~~~~~~~------~~~~~~~i~~~~~~~~~~~~~~~~~~~  195 (660)
                      +++|++++|+++.++.+++..+++.++++++|+++.......+....      .......++.+................
T Consensus        91 ~~~G~v~v~l~~~~~~~~l~~~l~~~~~~~ii~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  170 (567)
T PLN02479         91 PMAGAVVNCVNIRLNAPTIAFLLEHSKSEVVMVDQEFFTLAEEALKILAEKKKSSFKPPLLIVIGDPTCDPKSLQYALGK  170 (567)
T ss_pred             HhCCcEEEEeccccCHHHHHHHHhhcCceEEEEchhhhhHHHHHHHHHhhcccccCCCceEEEecCCcCCcccccccccc
Confidence            99999999999999999999999999999999988765433221110      001112233332211000000000111


Q ss_pred             ceeeHHHHHhcCccCCccCCCCCCCceEEEEecCCCCCCCceeeecchhHHHHhhhhhhhcccccCCCCCCcEEEEecCh
Q 006111          196 KPYSWDEFLHLGKVNEMEILPPQPFNICTIMYTSGTSGDPKGVVLTHETIATFVSGVDLFLDQFEDKMTVDDVYLSFLPL  275 (660)
Q Consensus       196 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~TSGTTG~pK~v~~th~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~pl  275 (660)
                      ....|.++................+++++++|||||||.||+|.+||+++..........+     ++..+++++..+|+
T Consensus       171 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~yTSGTTG~PKgV~~sh~~~~~~~~~~~~~~-----~~~~~~~~~~~~p~  245 (567)
T PLN02479        171 GAIEYEKFLETGDPEFAWKPPADEWQSIALGYTSGTTASPKGVVLHHRGAYLMALSNALIW-----GMNEGAVYLWTLPM  245 (567)
T ss_pred             CcccHHHHHhccccccccCCCCCcccceEEEECCCCCCCCcEEEeccHHHHHHHHHHHhhc-----CCCCCCEEEEecch
Confidence            2334566554321111111222345678899999999999999999999876555443333     67788999999999


Q ss_pred             hHHHHHHHHHH-HhhcCcEEEEecCChhhHHHHhhhhcCeEEEechHHHHHHHHHHHHHHHhhchHHHHHHHHHHHHHHH
Q 006111          276 AHILDRVIEEY-FFRRGASVGYYHGDLNALRDDLMELKPTLLAGVPRVFEKIHEGIKKALEELRPLRRRIFDALYKYKLA  354 (660)
Q Consensus       276 ~~~~g~~~~l~-~l~~G~~~v~~~~~~~~~~~~i~~~~~t~~~~~p~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~  354 (660)
                      +|.+++...+. .++.|.++++...++..+++.++++++|+++++|.++..|.+.......                   
T Consensus       246 ~h~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~l~~~~~t~~~~~P~~~~~l~~~~~~~~~-------------------  306 (567)
T PLN02479        246 FHCNGWCFTWTLAALCGTNICLRQVTAKAIYSAIANYGVTHFCAAPVVLNTIVNAPKSETI-------------------  306 (567)
T ss_pred             hhhhhHHHHHHHHhhcCceEeccCCCHHHHHHHHHHcCCeEEEecHHHHHHHHhhhhhccc-------------------
Confidence            99998776543 4666776666555999999999999999999999999988653211000                   


Q ss_pred             HHhhCCCCCCcchhhhHHHHHHHHHHhCCcEeEEEEccCCCCHHHHHHHHHhcCCceeeecCCCCCCCceecccC-----
Q 006111          355 WMNMGYKQREASPLADLLAFRKVKARLGGRLRLVISGGAPLSTEVEEFLRVTCCAFLVQGYGLTETCGPTTVCFP-----  429 (660)
Q Consensus       355 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lr~i~~~G~~l~~~~~~~~~~~~~~~v~~~YG~tE~~~~~~~~~~-----  429 (660)
                                               ...++++.++++|+++++.+.+.+.+. +.++++.||+||+++.++....     
T Consensus       307 -------------------------~~~~~l~~~~~~G~~~~~~~~~~~~~~-~~~~~~~yG~tE~~~~~~~~~~~~~~~  360 (567)
T PLN02479        307 -------------------------LPLPRVVHVMTAGAAPPPSVLFAMSEK-GFRVTHTYGLSETYGPSTVCAWKPEWD  360 (567)
T ss_pred             -------------------------ccccceeEEEEcCCCCCHHHHHHHHhc-CCceecccccccccccccceecccccc
Confidence                                     001488999999999999999998875 8899999999999654433210     


Q ss_pred             -----CCccccCccCCCccCee-EEeeecCCCCCCCCCCCCCceEEEccCCcccccCCCchhhhhcccCCccccCceEEE
Q 006111          430 -----DEMCMVGTAGPVSVYSE-LRLEEVPEMGYSPLDDPPCGEVCVRGKTLFSGYYKNPDLTRESIIDGWFHTGDIGQI  503 (660)
Q Consensus       430 -----~~~~~~~~~G~~~~~~~-v~ivd~~~~~~~~~~~~~~Gei~v~g~~~~~gy~~~~~~~~~~~~~g~~~TGDl~~~  503 (660)
                           .......+.|.+.+++. +++++.+.+..++.+.++.|||+++|++++.||+++++.+.+.|.+|||+|||+|++
T Consensus       361 ~~~~~~~~~~~~~~g~~~~g~~~~~i~d~~~~~~~~~~g~~~GEl~v~g~~~~~GY~~~~~~t~~~~~~g~~~TGDl~~~  440 (567)
T PLN02479        361 SLPPEEQARLNARQGVRYIGLEGLDVVDTKTMKPVPADGKTMGEIVMRGNMVMKGYLKNPKANEEAFANGWFHSGDLGVK  440 (567)
T ss_pred             ccCcccccccccccCCCcCCcCceeEEcCCCCcccCCCCCCceEEEEeccchhhhhhcCcccccchhcCCceecceeEEE
Confidence                 00111135677778875 788873334434443346799999999999999999999999999999999999999


Q ss_pred             CCCCcEEEEeccCCeeEcCCCeeecchhHHHHHhcCcCcceEEEEecCCC---CeEEEEEEcChhhHHHHHHHCCCCCcH
Q 006111          504 LPNGVVKIIDRKKNLIKISQGEYVALEYLENVYCVAPIIEDIWVYGDSLK---SMLVAVVVPCEEDTKKWAYSNGHAGSF  580 (660)
Q Consensus       504 ~~~G~l~~~GR~~d~i~~~~G~~v~~~~iE~~l~~~p~V~~~~V~~~~~~---~~~~a~v~~~~~~~~~~~~~~~~~~~~  580 (660)
                      |++|+++++||.+|+|++ +|++|+|.+||.+|.+||.|.+|+|++.++.   +.+++++++..+..             
T Consensus       441 ~~~g~l~~~GR~~d~i~~-~G~~v~~~eIE~~l~~~~~v~~~~v~~~~~~~~~~~~~~~v~~~~~~~-------------  506 (567)
T PLN02479        441 HPDGYIEIKDRSKDIIIS-GGENISSLEVENVVYTHPAVLEASVVARPDERWGESPCAFVTLKPGVD-------------  506 (567)
T ss_pred             cCCccEEEeccccceEEe-CCEEEcHHHHHHHHHhCcccceeeEEeccchhcCceeEEEEEecCccc-------------
Confidence            999999999999999996 8999999999999999999999999997654   47889988876531             


Q ss_pred             HHHhccHHHHHHHHHHHHHHHHhCCCCCceeeeEEEEecCCCCCCCCccccccccchHHHHHHHHH
Q 006111          581 LELCSLVQLQNYILSELKNAAERNKLRGFEHIKGVILDPRPFDMERDLVTATLKKKRNKLLIYYQV  646 (660)
Q Consensus       581 ~~~~~~~~~~~~~~~~l~~~~~~~~l~~~~~p~~i~~~~~~~~~~~~P~t~~GKv~R~~l~~~~~~  646 (660)
                           .. ..+...++|.++++ .+||.|.+|+.+.+.+       +|+|++||++|++|++.+..
T Consensus       507 -----~~-~~~~~~~~l~~~~~-~~l~~~~~P~~~~~~~-------iP~t~~gKv~r~~L~~~~~~  558 (567)
T PLN02479        507 -----KS-DEAALAEDIMKFCR-ERLPAYWVPKSVVFGP-------LPKTATGKIQKHVLRAKAKE  558 (567)
T ss_pred             -----cc-chhhhHHHHHHHHH-hhcccccCCceEEecc-------CCCCCccCeeHHHHHHHHHh
Confidence                 00 01223345666665 6899999999887532       58999999999999876543

>PRK12467 peptide synthase; Provisional

Probab=100.00  E-value=5.8e-61  Score=621.76  Aligned_cols=483  Identities=19%  Similarity=0.231  Sum_probs=403.0

Q ss_pred             CCCCcHHHHHHHHHHhCCCCCceeeeccccCCCCCceEEeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEeCCchhHHHHH
Q 006111           39 SDLNTAWDIFSMSVQKYPGNRMLGWRPFVDGKFGPYVWKTYKEVYEEVLQIVSALRASGAEPGCRVGIYGANCPQWVEAM  118 (660)
Q Consensus        39 ~~~~ti~~~l~~~a~~~pd~~a~~~~~~~d~~~~~~~~~Ty~ql~~~v~~lA~~L~~~Gl~~gd~V~l~~~n~~e~~~~~  118 (660)
                      +...++.++|+.+++++||++|+++.   +      +++||+||.++++++|..|.+.|+++|++|+++++|++++++++
T Consensus      3092 ~~~~~~~~l~~~~a~~~p~~~Av~~~---~------~~lTY~eL~~~a~~lA~~L~~~gv~~g~~V~l~~~~s~~~vv~~ 3162 (3956)
T PRK12467       3092 PSERLVHQLIEAQVARTPEAPALVFG---D------QQLSYAELNRRANRLAHRLIAIGVGPDVLVGVAVERSVEMIVAL 3162 (3956)
T ss_pred             CccccHHHHHHHHHHhCCCcceEeeC---C------cccCHHHHHHHHHHHHHHHHHcCCCCCCeEEEEeCCCHHHHHHH
Confidence            34579999999999999999999986   4      47999999999999999999999999999999999999999999


Q ss_pred             HHHHhCCCeEEecCCCCChhHHHHHHhcccceEEEEccchhhhhhccccccccCccEEEEecCCcHHHHHHHhhCCccee
Q 006111          119 EACNALSLICVPLYDTLGPGAVNFILDHAEIDFVFVQDKKVKELLSPDCRSAQRLRVMVCFTSLTAEQKEMAVQTGIKPY  198 (660)
Q Consensus       119 lA~~~~G~~~vpl~~~~~~~~l~~~l~~~~~~~ii~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~  198 (660)
                      |||+++|++++|++|.++.+++..+++.++++++|++......+...      ....++.++...               
T Consensus      3163 lavl~aGa~~vpld~~~p~~rl~~il~~~~~~~vlt~~~~~~~~~~~------~~~~~~~~~~~~--------------- 3221 (3956)
T PRK12467       3163 LAVLKAGGAYVPLDPEYPRERLAYMIEDSGVKLLLTQAHLLEQLPAP------AGDTALTLDRLD--------------- 3221 (3956)
T ss_pred             HHHHhhCcEeecCCCCChHHHHHHHHhCCCCcEEEechhhhhhcccc------cCCceeeecchh---------------
Confidence            99999999999999999999999999999999999987765433111      011122222110               


Q ss_pred             eHHHHHhcCccCCccCCCCCCCceEEEEecCCCCCCCceeeecchhHHHHhhhhhhhcccccCCCCCCcEEEEecChhHH
Q 006111          199 SWDEFLHLGKVNEMEILPPQPFNICTIMYTSGTSGDPKGVVLTHETIATFVSGVDLFLDQFEDKMTVDDVYLSFLPLAHI  278 (660)
Q Consensus       199 ~~~~~~~~~~~~~~~~~~~~~~~~~~i~~TSGTTG~pK~v~~th~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~pl~~~  278 (660)
                            ........+.....++++++|+|||||||.||||+++|+++.+.+......+     +++.+|+++.+.|++|.
T Consensus      3222 ------~~~~~~~~~~~~~~~~~~a~ii~TSGSTG~PKgV~~~h~~l~~~~~~~~~~~-----~~~~~d~~l~~~~~~fd 3290 (3956)
T PRK12467       3222 ------LNGYSENNPSTRVMGENLAYVIYTSGSTGKPKGVGVRHGALANHLCWIAEAY-----ELDANDRVLLFMSFSFD 3290 (3956)
T ss_pred             ------hcccCCCCCcccCCCCceEEEEEccCCCCCcceeeehhHHHHHHHHHHHHhc-----CCCcCCEEEEecCccHh
Confidence                  0011112223345789999999999999999999999999999999888777     88999999999999999


Q ss_pred             HHHHHHHHHhhcCcEEEEecC---ChhhHHHHhhhhcCeEEEechHHHHHHHHHHHHHHHhhchHHHHHHHHHHHHHHHH
Q 006111          279 LDRVIEEYFFRRGASVGYYHG---DLNALRDDLMELKPTLLAGVPRVFEKIHEGIKKALEELRPLRRRIFDALYKYKLAW  355 (660)
Q Consensus       279 ~g~~~~l~~l~~G~~~v~~~~---~~~~~~~~i~~~~~t~~~~~p~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  355 (660)
                      .+...++.+++.|+++++.+.   ++..+++.|.++++|++.++|+++..+.+....                       
T Consensus      3291 ~~~~~~~~~L~~G~~l~i~~~~~~~~~~l~~~i~~~~vt~~~~~Ps~l~~l~~~~~~----------------------- 3347 (3956)
T PRK12467       3291 GAQERFLWTLICGGCLVVRDNDLWDPEELWQAIHAHRISIACFPPAYLQQFAEDAGG----------------------- 3347 (3956)
T ss_pred             HHHHHHHHHHhCCCEEEECCcccCCHHHHHHHHHHcCCEEEEcCHHHHHHHHhcccc-----------------------
Confidence            988888999999999999874   789999999999999999999999887642110                       


Q ss_pred             HhhCCCCCCcchhhhHHHHHHHHHHhCCcEeEEEEccCCCCHHHHHHHHHhc-CCceeeecCCCCCCCceecccCCCc--
Q 006111          356 MNMGYKQREASPLADLLAFRKVKARLGGRLRLVISGGAPLSTEVEEFLRVTC-CAFLVQGYGLTETCGPTTVCFPDEM--  432 (660)
Q Consensus       356 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lr~i~~~G~~l~~~~~~~~~~~~-~~~v~~~YG~tE~~~~~~~~~~~~~--  432 (660)
                                              ...++||.+++|||++++++.+.|.+.+ ++.++++||+||++..++.......  
T Consensus      3348 ------------------------~~~~~lr~~~~gGe~~~~~~~~~~~~~~~~~~l~n~YG~TE~~~~~~~~~~~~~~~ 3403 (3956)
T PRK12467       3348 ------------------------ADCASLDIYVFGGEAVPPAAFEQVKRKLKPRGLTNGYGPTEAVVTVTLWKCGGDAV 3403 (3956)
T ss_pred             ------------------------cCCCCceEEEEecCCCCHHHHHHHHHhCCCCEEEeCcccchhEeeeEEEecccccc
Confidence                                    0114899999999999999999998876 6789999999999987765433221  


Q ss_pred             --cccCccCCCccCeeEEeeecCCCCCCCCCCCCCceEEEccCCcccccCCCchhhhhcc-cCC-------ccccCceEE
Q 006111          433 --CMVGTAGPVSVYSELRLEEVPEMGYSPLDDPPCGEVCVRGKTLFSGYYKNPDLTRESI-IDG-------WFHTGDIGQ  502 (660)
Q Consensus       433 --~~~~~~G~~~~~~~v~ivd~~~~~~~~~~~~~~Gei~v~g~~~~~gy~~~~~~~~~~~-~~g-------~~~TGDl~~  502 (660)
                        ....++|+|++|++++|+| +++.  +++.|+.|||+|+|+++++||+++++.|.++| .++       ||+|||+|+
T Consensus      3404 ~~~~~~~iG~p~~~~~~~v~d-~~~~--~vp~G~~GEL~i~G~~v~~GY~~~~~~T~~~F~~~p~~~~g~r~yrTGDl~~ 3480 (3956)
T PRK12467       3404 CEAPYAPIGRPVAGRSIYVLD-GQLN--PVPVGVAGELYIGGVGLARGYHQRPSLTAERFVADPFSGSGGRLYRTGDLAR 3480 (3956)
T ss_pred             cCCCCCCCccccCCCEEEEEC-CCCC--CCCCCCCceEEEcchhhhhhccCCcccchhhccCCCCCCCCceeeccchhhe
Confidence              1236899999999999998 6665  45566899999999999999999999999999 443       699999999


Q ss_pred             ECCCCcEEEEeccCCeeEcCCCeeecchhHHHHHhcCcCcceEEEEecCC--CCeEEEEEEcChhhHHHHHHHCCCCCcH
Q 006111          503 ILPNGVVKIIDRKKNLIKISQGEYVALEYLENVYCVAPIIEDIWVYGDSL--KSMLVAVVVPCEEDTKKWAYSNGHAGSF  580 (660)
Q Consensus       503 ~~~~G~l~~~GR~~d~i~~~~G~~v~~~~iE~~l~~~p~V~~~~V~~~~~--~~~~~a~v~~~~~~~~~~~~~~~~~~~~  580 (660)
                      +++||.|+++||+||+||+ +|++|+|.|||++|.+||+|.+|+|++...  .+.++|+|+...+..             
T Consensus      3481 ~~~dG~l~~~GR~d~~iki-~G~rIe~~EIE~~l~~~p~V~~a~v~~~~~~~~~~lva~v~~~~~~~------------- 3546 (3956)
T PRK12467       3481 YRADGVIEYLGRIDHQVKI-RGFRIELGEIEARLLQHPSVREAVVLARDGAGGKQLVAYVVPADPQG------------- 3546 (3956)
T ss_pred             ecCCCcEEEeccccceEee-ceEeecHHHHHHHHhhCcccceEEEEEecCCCCcEEEEEEeCCCCCc-------------
Confidence            9999999999999999998 799999999999999999999999997543  358999999876320             


Q ss_pred             HHHhccHHHHHHHHHHHHHHHHhCCCCCceeeeEEEEecCCCCCCCCccccccccchHHHHHHH
Q 006111          581 LELCSLVQLQNYILSELKNAAERNKLRGFEHIKGVILDPRPFDMERDLVTATLKKKRNKLLIYY  644 (660)
Q Consensus       581 ~~~~~~~~~~~~~~~~l~~~~~~~~l~~~~~p~~i~~~~~~~~~~~~P~t~~GKv~R~~l~~~~  644 (660)
                                 ...+.++++++ ..||.|++|..|+++      +.+|+|++||++|++|.+.+
T Consensus      3547 -----------~~~~~l~~~l~-~~Lp~y~vP~~~~~l------~~lP~t~~GKidR~~L~~~~ 3592 (3956)
T PRK12467       3547 -----------DWRETLRDHLA-ASLPDYMVPAQLLVL------AAMPLGPNGKVDRKALPDPD 3592 (3956)
T ss_pred             -----------ccHHHHHHHHh-ccCChhhCCCeeeee------ccCCCCCCCccchhhcCCCC
Confidence                       01234555554 789999999999886      44699999999999998654

>PRK08279 long-chain-acyl-CoA synthetase; Validated

Probab=100.00  E-value=2.8e-60  Score=531.56  Aligned_cols=502  Identities=20%  Similarity=0.237  Sum_probs=385.9

Q ss_pred             CCCCCCCcHHHHHHHHHHhCCCCCceeeeccccCCCCCceEEeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEeCCchhHH
Q 006111           36 SVDSDLNTAWDIFSMSVQKYPGNRMLGWRPFVDGKFGPYVWKTYKEVYEEVLQIVSALRASGAEPGCRVGIYGANCPQWV  115 (660)
Q Consensus        36 ~~~~~~~ti~~~l~~~a~~~pd~~a~~~~~~~d~~~~~~~~~Ty~ql~~~v~~lA~~L~~~Gl~~gd~V~l~~~n~~e~~  115 (660)
                      ..+....++.+.|.++++++|+++|+++.   +      +++||+||.++++++|.+|.+.|+++||+|+++++|+++++
T Consensus        31 ~~~~~~~tl~~~l~~~a~~~p~~~Ai~~~---~------~~~Ty~eL~~~~~~la~~L~~~g~~~gd~V~i~~~n~~~~v  101 (600)
T PRK08279         31 ITPDSKRSLGDVFEEAAARHPDRPALLFE---D------QSISYAELNARANRYAHWAAARGVGKGDVVALLMENRPEYL  101 (600)
T ss_pred             cCCCCcccHHHHHHHHHHhCCCCcEEEeC---C------CcccHHHHHHHHHHHHHHHHhcCCCCCCEEEEECCCCHHHH
Confidence            45566789999999999999999999875   3      47999999999999999999999999999999999999999


Q ss_pred             HHHHHHHhCCCeEEecCCCCChhHHHHHHhcccceEEEEccchhhhhhccccccccCccEEEEecCCcHHHHHHHhhCCc
Q 006111          116 EAMEACNALSLICVPLYDTLGPGAVNFILDHAEIDFVFVQDKKVKELLSPDCRSAQRLRVMVCFTSLTAEQKEMAVQTGI  195 (660)
Q Consensus       116 ~~~lA~~~~G~~~vpl~~~~~~~~l~~~l~~~~~~~ii~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~  195 (660)
                      +++|||+++|++++|+++.++.+++..+++.++++++|++.+....+.+... .......++..++....          
T Consensus       102 ~~~lA~~~~G~~~v~l~~~~~~~~l~~~l~~~~~~~li~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~----------  170 (600)
T PRK08279        102 AAWLGLAKLGAVVALLNTQQRGAVLAHSLNLVDAKHLIVGEELVEAFEEARA-DLARPPRLWVAGGDTLD----------  170 (600)
T ss_pred             HHHHHHHhcCcEEeecCCCCCHHHHHHHHHhcCCCEEEEChHHHHHHHHHhh-hhcccceEEEecCcccc----------
Confidence            9999999999999999999999999999999999999999876665433221 11122223332221100          


Q ss_pred             ceeeHHHHHhcCccC----CccCCCCCCCceEEEEecCCCCCCCceeeecchhHHHHhhhhhhhcccccCCCCCCcEEEE
Q 006111          196 KPYSWDEFLHLGKVN----EMEILPPQPFNICTIMYTSGTSGDPKGVVLTHETIATFVSGVDLFLDQFEDKMTVDDVYLS  271 (660)
Q Consensus       196 ~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~i~~TSGTTG~pK~v~~th~~l~~~~~~~~~~~~~~~~~~~~~~~~l~  271 (660)
                      ....|.++.......    ........++++++|+|||||||.||+|.+||+++.+.+..+...+     ++..++++++
T Consensus       171 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~il~TSGTTG~PKgV~~sh~~l~~~~~~~~~~~-----~l~~~d~~l~  245 (600)
T PRK08279        171 DPEGYEDLAAAAAGAPTTNPASRSGVTAKDTAFYIYTSGTTGLPKAAVMSHMRWLKAMGGFGGLL-----RLTPDDVLYC  245 (600)
T ss_pred             ccccHHHHhhhcccCCccCCCcccCCCccccEEEEEcCCCCCCCcEEEEeHHHHHHHHHHHHHhc-----CCCCCcEEEE
Confidence            011233333221111    1122344678999999999999999999999999999998877666     7889999999


Q ss_pred             ecChhHHHHHHHH-HHHhhcCcEEEEecC-ChhhHHHHhhhhcCeEEEechHHHHHHHHHHHHHHHhhchHHHHHHHHHH
Q 006111          272 FLPLAHILDRVIE-EYFFRRGASVGYYHG-DLNALRDDLMELKPTLLAGVPRVFEKIHEGIKKALEELRPLRRRIFDALY  349 (660)
Q Consensus       272 ~~pl~~~~g~~~~-l~~l~~G~~~v~~~~-~~~~~~~~i~~~~~t~~~~~p~~~~~l~~~~~~~~~~~~~~~~~~~~~~~  349 (660)
                      .+|++|.+++... +.++..|+++++.+. ++..+++.++++++|++.++|++++.+.........              
T Consensus       246 ~~pl~h~~g~~~~~~~~l~~G~~~v~~~~~~~~~~~~~i~~~~~t~~~~~p~l~~~l~~~~~~~~~--------------  311 (600)
T PRK08279        246 CLPLYHNTGGTVAWSSVLAAGATLALRRKFSASRFWDDVRRYRATAFQYIGELCRYLLNQPPKPTD--------------  311 (600)
T ss_pred             ecCchhhhhHHHHHHHHHhcCcEEEEcCCCCHHHHHHHHHHhcceEEeehHHHHHHHHhCCCCccc--------------
Confidence            9999999998865 455788888888776 899999999999999999999999887642110000              


Q ss_pred             HHHHHHHhhCCCCCCcchhhhHHHHHHHHHHhCCcEeEEEEccCCCCHHHHHHHHHhcCC-ceeeecCCCCCCCceeccc
Q 006111          350 KYKLAWMNMGYKQREASPLADLLAFRKVKARLGGRLRLVISGGAPLSTEVEEFLRVTCCA-FLVQGYGLTETCGPTTVCF  428 (660)
Q Consensus       350 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lr~i~~~G~~l~~~~~~~~~~~~~~-~v~~~YG~tE~~~~~~~~~  428 (660)
                                                     ...++|.+  +|+.+++++.+.|.+.++. .+++.||+||++..+... 
T Consensus       312 -------------------------------~~~~l~~~--~g~~l~~~~~~~~~~~~~~~~l~~~YG~tE~~~~~~~~-  357 (600)
T PRK08279        312 -------------------------------RDHRLRLM--IGNGLRPDIWDEFQQRFGIPRILEFYAASEGNVGFINV-  357 (600)
T ss_pred             -------------------------------cCcceeEE--ecCCCCHHHHHHHHHHhCcceeeeeecccccceeeccc-
Confidence                                           01266654  4778999999999998876 599999999998644322 


Q ss_pred             CCCccccCccCCCcc----CeeE---------EeeecCCCCCCCCCCCCCceEE--EccCCcccccCCCchhhhhcc---
Q 006111          429 PDEMCMVGTAGPVSV----YSEL---------RLEEVPEMGYSPLDDPPCGEVC--VRGKTLFSGYYKNPDLTRESI---  490 (660)
Q Consensus       429 ~~~~~~~~~~G~~~~----~~~v---------~ivd~~~~~~~~~~~~~~Gei~--v~g~~~~~gy~~~~~~~~~~~---  490 (660)
                         ....+++|.+.+    +..+         .+.+ .++....++.++.|||+  +.|+.++.|| +++..+.+.|   
T Consensus       358 ---~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~i~~-~~~~~~~~~~g~~Gel~~~i~~~~~~~GY-~~~~~t~~~~~~~  432 (600)
T PRK08279        358 ---FNFDGTVGRVPLWLAHPYAIVKYDVDTGEPVRD-ADGRCIKVKPGEVGLLIGRITDRGPFDGY-TDPEASEKKILRD  432 (600)
T ss_pred             ---CCCCcccccccccccccceeeeeccCcCceeeC-CCCccccCCCCCceeEEEEecCccccccc-CCchhhHHHHhhc
Confidence               122356676544    2222         2333 33333455667899998  7899999999 8888877765   


Q ss_pred             ----cCCccccCceEEECCCCcEEEEeccCCeeEcCCCeeecchhHHHHHhcCcCcceEEEEecCCC----CeEEEEEEc
Q 006111          491 ----IDGWFHTGDIGQILPNGVVKIIDRKKNLIKISQGEYVALEYLENVYCVAPIIEDIWVYGDSLK----SMLVAVVVP  562 (660)
Q Consensus       491 ----~~g~~~TGDl~~~~~~G~l~~~GR~~d~i~~~~G~~v~~~~iE~~l~~~p~V~~~~V~~~~~~----~~~~a~v~~  562 (660)
                          .++||+|||+|++|+||++++.||.||+|++ +|++|+|.+||++|.+||+|.+|+|++.+++    ...+++++.
T Consensus       433 ~~~~~~~~~~TGDlg~~~~dG~l~~~GR~~d~ik~-~G~~i~p~eIE~~l~~~p~V~~a~v~gv~~~~~~~~~~~~~vv~  511 (600)
T PRK08279        433 VFKKGDAWFNTGDLMRDDGFGHAQFVDRLGDTFRW-KGENVATTEVENALSGFPGVEEAVVYGVEVPGTDGRAGMAAIVL  511 (600)
T ss_pred             ccCCCCceEeecceEEEcCCccEEEecccCCeEEE-CCcccCHHHHHHHHhcCCCcceEEEEEeecCCCCCccceeEEEe
Confidence                2579999999999999999999999999997 8999999999999999999999999986532    345555555


Q ss_pred             ChhhHHHHHHHCCCCCcHHHHhccHHHHHHHHHHHHHHHHhCCCCCceeeeEEEEecCCCCCCCCccccccccchHHHHH
Q 006111          563 CEEDTKKWAYSNGHAGSFLELCSLVQLQNYILSELKNAAERNKLRGFEHIKGVILDPRPFDMERDLVTATLKKKRNKLLI  642 (660)
Q Consensus       563 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~l~~~~~p~~i~~~~~~~~~~~~P~t~~GKv~R~~l~~  642 (660)
                      .++.        ..        .        .++++++++ .+||.|++|..|++++      .+|+|++||++|++|++
T Consensus       512 ~~~~--------~~--------~--------~~~l~~~l~-~~L~~~~~P~~i~~v~------~lP~t~~GKi~r~~L~~  560 (600)
T PRK08279        512 ADGA--------EF--------D--------LAALAAHLY-ERLPAYAVPLFVRLVP------ELETTGTFKYRKVDLRK  560 (600)
T ss_pred             cCCc--------cC--------C--------HHHHHHHHH-hhCccccCCeEEEeec------CCCCCcchhhhHHHHhh
Confidence            4321        00        1        134445554 6799999999999874      46899999999999998


Q ss_pred             HHHHH
Q 006111          643 YYQVE  647 (660)
Q Consensus       643 ~~~~~  647 (660)
                      ++.+.
T Consensus       561 ~~~~~  565 (600)
T PRK08279        561 EGFDP  565 (600)
T ss_pred             cCCCc
Confidence            77554

>PRK07059 Long-chain-fatty-acid--CoA ligase; Validated

Probab=100.00  E-value=1.5e-59  Score=521.45  Aligned_cols=514  Identities=22%  Similarity=0.282  Sum_probs=396.8

Q ss_pred             CCCCCcHHHHHHHHHHhCCCCCceeeeccccCCCCCceEEeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEeCCchhHHHH
Q 006111           38 DSDLNTAWDIFSMSVQKYPGNRMLGWRPFVDGKFGPYVWKTYKEVYEEVLQIVSALRASGAEPGCRVGIYGANCPQWVEA  117 (660)
Q Consensus        38 ~~~~~ti~~~l~~~a~~~pd~~a~~~~~~~d~~~~~~~~~Ty~ql~~~v~~lA~~L~~~Gl~~gd~V~l~~~n~~e~~~~  117 (660)
                      +...+++.+.|..+++++|+++|+++.   +      +.+||.||.++++++|..|.+.|+++||+|+++++|+++++++
T Consensus        19 ~~~~~~i~~~l~~~a~~~p~~~a~~~~---~------~~lTy~~l~~~~~~~a~~L~~~gi~~gd~V~i~~~n~~~~~~~   89 (557)
T PRK07059         19 ASQYPSLADLLEESFRQYADRPAFICM---G------KAITYGELDELSRALAAWLQSRGLAKGARVAIMMPNVLQYPVA   89 (557)
T ss_pred             CCCCCCHHHHHHHHHHHcCCCceEEEc---C------ceeeHHHHHHHHHHHHHHHHHhCCCCCCEEEEECCCCHHHHHH
Confidence            445678999999999999999999875   3      4799999999999999999999999999999999999999999


Q ss_pred             HHHHHhCCCeEEecCCCCChhHHHHHHhcccceEEEEccchhhhhhccccccccCccEEEEecCCcHHH--H---H----
Q 006111          118 MEACNALSLICVPLYDTLGPGAVNFILDHAEIDFVFVQDKKVKELLSPDCRSAQRLRVMVCFTSLTAEQ--K---E----  188 (660)
Q Consensus       118 ~lA~~~~G~~~vpl~~~~~~~~l~~~l~~~~~~~ii~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~--~---~----  188 (660)
                      +|||+++|++++|++|.++.+++..+++.++++++|+++.....+..... . .....++.........  .   .    
T Consensus        90 ~la~~~~G~~~v~v~~~~~~~~~~~~~~~~~~~~vi~~~~~~~~~~~~~~-~-~~~~~~~~~~~~~~~~~~~~~~~~~~~  167 (557)
T PRK07059         90 IAAVLRAGYVVVNVNPLYTPRELEHQLKDSGAEAIVVLENFATTVQQVLA-K-TAVKHVVVASMGDLLGFKGHIVNFVVR  167 (557)
T ss_pred             HHHHHhcCeEEeccCcccCHHHHHHHHHccCceEEEEchhhHHHHHHhhc-c-cCCceeEEecccccccccccccccccc
Confidence            99999999999999999999999999999999999998766543322211 1 1122222211000000  0   0    


Q ss_pred             -HH----hhCCcceeeHHHHHhcCccCCccCCCCCCCceEEEEecCCCCCCCceeeecchhHHHHhhhhhhhccc-ccCC
Q 006111          189 -MA----VQTGIKPYSWDEFLHLGKVNEMEILPPQPFNICTIMYTSGTSGDPKGVVLTHETIATFVSGVDLFLDQ-FEDK  262 (660)
Q Consensus       189 -~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~TSGTTG~pK~v~~th~~l~~~~~~~~~~~~~-~~~~  262 (660)
                       ..    .........+.++...............++++++|+|||||||.||+|.++|.++...+......+.. ....
T Consensus       168 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~il~TSGTTG~PK~v~~s~~~l~~~~~~~~~~~~~~~~~~  247 (557)
T PRK07059        168 RVKKMVPAWSLPGHVRFNDALAEGARQTFKPVKLGPDDVAFLQYTGGTTGVSKGATLLHRNIVANVLQMEAWLQPAFEKK  247 (557)
T ss_pred             cccccccccCCCCcccHHHHhhccCCCCCCCCCCCcCceEEEEeCCCCCCCCcEEEeecHHHHHHHHHHhhhhccccccc
Confidence             00    00001123344444433222222344578899999999999999999999999998766543332211 0001


Q ss_pred             -CCCCcEEEEecChhHHHHHHH-HHHHhhcCcEEEEecC--ChhhHHHHhhhhcCeEEEechHHHHHHHHHHHHHHHhhc
Q 006111          263 -MTVDDVYLSFLPLAHILDRVI-EEYFFRRGASVGYYHG--DLNALRDDLMELKPTLLAGVPRVFEKIHEGIKKALEELR  338 (660)
Q Consensus       263 -~~~~~~~l~~~pl~~~~g~~~-~l~~l~~G~~~v~~~~--~~~~~~~~i~~~~~t~~~~~p~~~~~l~~~~~~~~~~~~  338 (660)
                       ......+++.+|++|.+++.. .+.++..|++.++.+.  ++..+++.++++++|.+.++|.++..+.....       
T Consensus       248 ~~~~~~~~~~~~pl~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~i~~~~vt~~~~~p~~~~~l~~~~~-------  320 (557)
T PRK07059        248 PRPDQLNFVCALPLYHIFALTVCGLLGMRTGGRNILIPNPRDIPGFIKELKKYQVHIFPAVNTLYNALLNNPD-------  320 (557)
T ss_pred             CCCCCcEEEEeCCcHHHHHHHHHHHHHHhhcceEEEecCCcCHHHHHHHHHHhCCeeeecCHHHHHHHHcCcC-------
Confidence             113457788999999988764 5667888888777654  78899999999999999999999988764211       


Q ss_pred             hHHHHHHHHHHHHHHHHHhhCCCCCCcchhhhHHHHHHHHHHhCCcEeEEEEccCCCCHHHHHHHHHhcCCceeeecCCC
Q 006111          339 PLRRRIFDALYKYKLAWMNMGYKQREASPLADLLAFRKVKARLGGRLRLVISGGAPLSTEVEEFLRVTCCAFLVQGYGLT  418 (660)
Q Consensus       339 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lr~i~~~G~~l~~~~~~~~~~~~~~~v~~~YG~t  418 (660)
                                                    ....++        +++|.++.||+++++.+.+.|.+.+++++++.||+|
T Consensus       321 ------------------------------~~~~~~--------~~l~~~~~gg~~~~~~~~~~~~~~~~~~~~~~YG~t  362 (557)
T PRK07059        321 ------------------------------FDKLDF--------SKLIVANGGGMAVQRPVAERWLEMTGCPITEGYGLS  362 (557)
T ss_pred             ------------------------------cCcCCc--------hhheEEEeccccCCHHHHHHHHHHhCCCeeeccccc
Confidence                                          011112        388999999999999999999998999999999999


Q ss_pred             CCCCceecccCCCccccCccCCCccCeeEEeeecCCCCCCCCCCCCCceEEEccCCcccccCCCchhhhhcc-cCCcccc
Q 006111          419 ETCGPTTVCFPDEMCMVGTAGPVSVYSELRLEEVPEMGYSPLDDPPCGEVCVRGKTLFSGYYKNPDLTRESI-IDGWFHT  497 (660)
Q Consensus       419 E~~~~~~~~~~~~~~~~~~~G~~~~~~~v~ivd~~~~~~~~~~~~~~Gei~v~g~~~~~gy~~~~~~~~~~~-~~g~~~T  497 (660)
                      |++.+++.........++++|.|+++++++++| +++.  +++.|+.|||+++|+.++.||+++++.+.+.| .+|||+|
T Consensus       363 E~~~~~~~~~~~~~~~~~~vG~p~~g~~v~i~d-~~~~--~~~~g~~Gel~v~g~~~~~gY~~~~~~~~~~~~~~g~~~T  439 (557)
T PRK07059        363 ETSPVATCNPVDATEFSGTIGLPLPSTEVSIRD-DDGN--DLPLGEPGEICIRGPQVMAGYWNRPDETAKVMTADGFFRT  439 (557)
T ss_pred             cccchhhcCCCCCCCcCCcccCccCCcEEEEEC-CCCC--CCCCCCceEEEEeCCccchhhhcCHHHHhhhcccCCceec
Confidence            999877665544334457999999999999999 6665  34456799999999999999999999998888 7899999


Q ss_pred             CceEEECCCCcEEEEeccCCeeEcCCCeeecchhHHHHHhcCcCcceEEEEecCCC---CeEEEEEEcChhhHHHHHHHC
Q 006111          498 GDIGQILPNGVVKIIDRKKNLIKISQGEYVALEYLENVYCVAPIIEDIWVYGDSLK---SMLVAVVVPCEEDTKKWAYSN  574 (660)
Q Consensus       498 GDl~~~~~~G~l~~~GR~~d~i~~~~G~~v~~~~iE~~l~~~p~V~~~~V~~~~~~---~~~~a~v~~~~~~~~~~~~~~  574 (660)
                      ||+|+++++|.+++.||.+|+|++ +|++|+|.+||++|.+||+|.+++|++.++.   +.++++++..+..        
T Consensus       440 GDl~~~~~~g~~~~~GR~~~~i~~-~G~~i~p~~iE~~l~~~~~V~~~~v~~~~~~~~ge~~~~~v~~~~~~--------  510 (557)
T PRK07059        440 GDVGVMDERGYTKIVDRKKDMILV-SGFNVYPNEIEEVVASHPGVLEVAAVGVPDEHSGEAVKLFVVKKDPA--------  510 (557)
T ss_pred             CcEEEEcCCCcEEEecccccceEE-CCEEEcHHHHHHHHHhCCceeEEEEEecccCCCCeeEEEEEEeCCCC--------
Confidence            999999999999999999999997 7999999999999999999999999986543   4677777765421        


Q ss_pred             CCCCcHHHHhccHHHHHHHHHHHHHHHHhCCCCCceeeeEEEEecCCCCCCCCccccccccchHHHHHH
Q 006111          575 GHAGSFLELCSLVQLQNYILSELKNAAERNKLRGFEHIKGVILDPRPFDMERDLVTATLKKKRNKLLIY  643 (660)
Q Consensus       575 ~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~l~~~~~p~~i~~~~~~~~~~~~P~t~~GKv~R~~l~~~  643 (660)
                       .        .        .+++.+++. ..|+.|.+|..+.++      +.+|+|++||++|+.|+++
T Consensus       511 -~--------~--------~~~l~~~~~-~~l~~~~~P~~i~~v------~~~P~t~~GK~~r~~L~~~  555 (557)
T PRK07059        511 -L--------T--------EEDVKAFCK-ERLTNYKRPKFVEFR------TELPKTNVGKILRRELRDG  555 (557)
T ss_pred             -C--------C--------HHHHHHHHH-HhcccccCCcEEEEe------ccCCCCcccceeHHHHHhh
Confidence             0        1        123344443 578899999999987      4468999999999999864

>PRK09088 acyl-CoA synthetase; Validated

Probab=100.00  E-value=6.7e-60  Score=516.25  Aligned_cols=473  Identities=23%  Similarity=0.276  Sum_probs=379.1

Q ss_pred             HHHHHhCCCCCceeeeccccCCCCCceEEeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEeCCchhHHHHHHHHHhCCCeE
Q 006111           49 SMSVQKYPGNRMLGWRPFVDGKFGPYVWKTYKEVYEEVLQIVSALRASGAEPGCRVGIYGANCPQWVEAMEACNALSLIC  128 (660)
Q Consensus        49 ~~~a~~~pd~~a~~~~~~~d~~~~~~~~~Ty~ql~~~v~~lA~~L~~~Gl~~gd~V~l~~~n~~e~~~~~lA~~~~G~~~  128 (660)
                      +.++..+||++|+.+.  .++     ..+||.||.+++.++|.+|.+.|+++||+|+++++|++++++++|||+++|+++
T Consensus         2 ~~~a~~~p~~~a~~~~--~~~-----~~~ty~~l~~~v~~~a~~l~~~g~~~~~~v~i~~~~~~~~~~~~la~~~~G~~~   74 (488)
T PRK09088          2 AFHARLQPQRLAAVDL--ALG-----RRWTYAELDALVGRLAAVLRRRGCVDGERLAVLARNSVWLVALHFACARVGAIY   74 (488)
T ss_pred             chhhhhCCCceEEEec--CCC-----cEEEHHHHHHHHHHHHHHHHHcCCCCCCEEEEECCCCHHHHHHHHHHHHcCeEE
Confidence            4577889999999763  022     589999999999999999999999999999999999999999999999999999


Q ss_pred             EecCCCCChhHHHHHHhcccceEEEEccchhhhhhccccccccCccEEEEecCCcHHHHHHHhhCCcceeeHHHHHhcCc
Q 006111          129 VPLYDTLGPGAVNFILDHAEIDFVFVQDKKVKELLSPDCRSAQRLRVMVCFTSLTAEQKEMAVQTGIKPYSWDEFLHLGK  208 (660)
Q Consensus       129 vpl~~~~~~~~l~~~l~~~~~~~ii~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  208 (660)
                      +|+++..+.+++..+++.++++++|+++.......           ..                     ..++++.....
T Consensus        75 v~~~~~~~~~~~~~~~~~~~~~~ii~~~~~~~~~~-----------~~---------------------~~~~~~~~~~~  122 (488)
T PRK09088         75 VPLNWRLSASELDALLQDAEPRLLLGDDAVAAGRT-----------DV---------------------EDLAAFIASAD  122 (488)
T ss_pred             EeeCccCCHHHHHHHHHhCCCCEEEEcchhhcccc-----------cc---------------------cchhhhhhhcc
Confidence            99999999999999999999999999865432100           00                     01111111110


Q ss_pred             -cCCccCCCCCCCceEEEEecCCCCCCCceeeecchhHHHHhhhhhhhcccccCCCCCCcEEEEecChhHHHHHHH-HHH
Q 006111          209 -VNEMEILPPQPFNICTIMYTSGTSGDPKGVVLTHETIATFVSGVDLFLDQFEDKMTVDDVYLSFLPLAHILDRVI-EEY  286 (660)
Q Consensus       209 -~~~~~~~~~~~~~~~~i~~TSGTTG~pK~v~~th~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~pl~~~~g~~~-~l~  286 (660)
                       ..........++++++++|||||||.||+|.++|+++...+..+....     .+..++++++.+|++|.+++.. +..
T Consensus       123 ~~~~~~~~~~~~~~~~~i~~TSGTTG~PK~v~~s~~~l~~~~~~~~~~~-----~~~~~d~~l~~~pl~~~~g~~~~~~~  197 (488)
T PRK09088        123 ALEPADTPSIPPERVSLILFTSGTSGQPKGVMLSERNLQQTAHNFGVLG-----RVDAHSSFLCDAPMFHIIGLITSVRP  197 (488)
T ss_pred             ccccccCCCCCCCCceEEEeCCCCCCCCcEEEEehHHHHHHHHHHHHhh-----CCCCCcEEEEecchHHHHHHHHHHHH
Confidence             011112234568899999999999999999999999988777665554     6778999999999999999886 556


Q ss_pred             HhhcCcEEEEecC-ChhhHHHHhh--hhcCeEEEechHHHHHHHHHHHHHHHhhchHHHHHHHHHHHHHHHHHhhCCCCC
Q 006111          287 FFRRGASVGYYHG-DLNALRDDLM--ELKPTLLAGVPRVFEKIHEGIKKALEELRPLRRRIFDALYKYKLAWMNMGYKQR  363 (660)
Q Consensus       287 ~l~~G~~~v~~~~-~~~~~~~~i~--~~~~t~~~~~p~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  363 (660)
                      ++..|+++++.+. ++..++..+.  ++++|+++++|.++..+.+...                                
T Consensus       198 ~l~~g~~~~~~~~~~~~~~~~~~~~~~~~~t~~~~~P~~~~~l~~~~~--------------------------------  245 (488)
T PRK09088        198 VLAVGGSILVSNGFEPKRTLGRLGDPALGITHYFCVPQMAQAFRAQPG--------------------------------  245 (488)
T ss_pred             HHhcCCEEEEcCCCCHHHHHHHHHhhccCCcEEeeHHHHHHHHHhCcC--------------------------------
Confidence            6888999988765 7888888886  4899999999999988754210                                


Q ss_pred             CcchhhhHHHHHHHHHHhCCcEeEEEEccCCCCHHHHHHHHHhcCCceeeecCCCCCCCceecccCC--CccccCccCCC
Q 006111          364 EASPLADLLAFRKVKARLGGRLRLVISGGAPLSTEVEEFLRVTCCAFLVQGYGLTETCGPTTVCFPD--EMCMVGTAGPV  441 (660)
Q Consensus       364 ~~~~~~~~~~~~~~~~~~~~~lr~i~~~G~~l~~~~~~~~~~~~~~~v~~~YG~tE~~~~~~~~~~~--~~~~~~~~G~~  441 (660)
                           .+...+        +++|.+++||++++....+.+.+. |+++++.||+||++.........  .....+++|.|
T Consensus       246 -----~~~~~~--------~~l~~~~~gG~~~~~~~~~~~~~~-g~~v~~~YG~TE~~~~~~~~~~~~~~~~~~~~vG~~  311 (488)
T PRK09088        246 -----FDAAAL--------RHLTALFTGGAPHAAEDILGWLDD-GIPMVDGFGMSEAGTVFGMSVDCDVIRAKAGAAGIP  311 (488)
T ss_pred             -----cCcccc--------ccceEEEecCCCCCHHHHHHHHHh-CCceeeeecccccccccccCCCcccccccCCccccC
Confidence                 000011        389999999999999988887764 89999999999998765432211  12234789999


Q ss_pred             ccCeeEEeeecCCCCCCCCCCCCCceEEEccCCcccccCCCchhhhhcc-cCCccccCceEEECCCCcEEEEeccCCeeE
Q 006111          442 SVYSELRLEEVPEMGYSPLDDPPCGEVCVRGKTLFSGYYKNPDLTRESI-IDGWFHTGDIGQILPNGVVKIIDRKKNLIK  520 (660)
Q Consensus       442 ~~~~~v~ivd~~~~~~~~~~~~~~Gei~v~g~~~~~gy~~~~~~~~~~~-~~g~~~TGDl~~~~~~G~l~~~GR~~d~i~  520 (660)
                      +++++++|+| +++..  ++.++.|||+|+|++++.||++++..+.+.| .+|||+|||+|++|++|.+++.||.+|+|+
T Consensus       312 ~~~~~~~i~d-~~~~~--~~~g~~Gel~v~~~~~~~gY~~~~~~~~~~~~~~g~~~TGDl~~~~~~g~l~i~GR~~d~i~  388 (488)
T PRK09088        312 TPTVQTRVVD-DQGND--CPAGVPGELLLRGPNLSPGYWRRPQATARAFTGDGWFRTGDIARRDADGFFWVVDRKKDMFI  388 (488)
T ss_pred             CCCcEEEEEC-CCCCC--CcCCCceEEEEECCccchhhcCChhhhhhhhcCCCCeeecceEEEcCCCcEEEeccccceEE
Confidence            9999999998 66553  4456899999999999999999999988888 689999999999999999999999999999


Q ss_pred             cCCCeeecchhHHHHHhcCcCcceEEEEecCCC---CeEEEEEEcChhhHHHHHHHCCCCCcHHHHhccHHHHHHHHHHH
Q 006111          521 ISQGEYVALEYLENVYCVAPIIEDIWVYGDSLK---SMLVAVVVPCEEDTKKWAYSNGHAGSFLELCSLVQLQNYILSEL  597 (660)
Q Consensus       521 ~~~G~~v~~~~iE~~l~~~p~V~~~~V~~~~~~---~~~~a~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l  597 (660)
                      + +|.+++|.+||++|.++|.|.+++|++.+++   +..+++|++.++..          .      .        .+++
T Consensus       389 ~-~G~~i~~~~iE~~l~~~~~v~~~~v~~~~~~~~g~~~~~~v~~~~~~~----------~------~--------~~~l  443 (488)
T PRK09088        389 S-GGENVYPAEIEAVLADHPGIRECAVVGMADAQWGEVGYLAIVPADGAP----------L------D--------LERI  443 (488)
T ss_pred             e-CCEEECHHHHHHHHHhCCCcceEEEEeCCCccCCceeEEEEEECCCCC----------C------C--------HHHH
Confidence            6 8999999999999999999999999997653   46788888775420          0      0        1234


Q ss_pred             HHHHHhCCCCCceeeeEEEEecCCCCCCCCccccccccchHHHHHHHHH
Q 006111          598 KNAAERNKLRGFEHIKGVILDPRPFDMERDLVTATLKKKRNKLLIYYQV  646 (660)
Q Consensus       598 ~~~~~~~~l~~~~~p~~i~~~~~~~~~~~~P~t~~GKv~R~~l~~~~~~  646 (660)
                      .++++ ..++.|++|..|.++      +.+|+|++||++|++|++++.+
T Consensus       444 ~~~~~-~~l~~~~~p~~i~~~------~~iP~t~~gKi~r~~l~~~~~~  485 (488)
T PRK09088        444 RSHLS-TRLAKYKVPKHLRLV------DALPRTASGKLQKARLRDALAA  485 (488)
T ss_pred             HHHHH-hhCcCCCCCCEEEEc------ccCCCCCCCceeHHHHHHHHHh
Confidence            44444 578899999999887      4468999999999999988765

>PRK13388 acyl-CoA synthetase; Provisional

Probab=100.00  E-value=8.1e-60  Score=520.54  Aligned_cols=483  Identities=19%  Similarity=0.197  Sum_probs=378.3

Q ss_pred             CcHHHHHHHHHHhCCCCCceeeeccccCCCCCceEEeHHHHHHHHHHHHHHHHHcCC-CCCCEEEEEeCCchhHHHHHHH
Q 006111           42 NTAWDIFSMSVQKYPGNRMLGWRPFVDGKFGPYVWKTYKEVYEEVLQIVSALRASGA-EPGCRVGIYGANCPQWVEAMEA  120 (660)
Q Consensus        42 ~ti~~~l~~~a~~~pd~~a~~~~~~~d~~~~~~~~~Ty~ql~~~v~~lA~~L~~~Gl-~~gd~V~l~~~n~~e~~~~~lA  120 (660)
                      .|+.++|..++  +|+++|+++.   +      .++||.||.++++++|..|.+.|+ ++||+|+++++|+++++++++|
T Consensus         3 ~~~~~~l~~~~--~p~~~Al~~~---~------~~lTy~el~~~~~~la~~L~~~g~~~~~~~V~i~~~n~~~~v~~~lA   71 (540)
T PRK13388          3 DTIAQLLRDRA--GDDTIAVRYG---D------RTWTWREVLAEAAARAAALIALADPDRPLHVGVLLGNTPEMLFWLAA   71 (540)
T ss_pred             hhHHHHHHhhc--cCCceEEEEC---C------ceeeHHHHHHHHHHHHHHHHHhcCCCCCCEEEEECCCCcHHHHHHHH
Confidence            57888888754  7999999865   3      479999999999999999999999 8999999999999999999999


Q ss_pred             HHhCCCeEEecCCCCChhHHHHHHhcccceEEEEccchhhhhhccccccccCccEEEEecCCcHHHHHHHhhCCcceeeH
Q 006111          121 CNALSLICVPLYDTLGPGAVNFILDHAEIDFVFVQDKKVKELLSPDCRSAQRLRVMVCFTSLTAEQKEMAVQTGIKPYSW  200 (660)
Q Consensus       121 ~~~~G~~~vpl~~~~~~~~l~~~l~~~~~~~ii~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~  200 (660)
                      |+++|++++|++|.++.+++..+++.++++++|++.+....+.+..   .+... ++..+..                .+
T Consensus        72 ~~~~Ga~~v~l~p~~~~~~l~~~l~~~~~~~~i~~~~~~~~~~~~~---~~~~~-~i~~~~~----------------~~  131 (540)
T PRK13388         72 AALGGYVLVGLNTTRRGAALAADIRRADCQLLVTDAEHRPLLDGLD---LPGVR-VLDVDTP----------------AY  131 (540)
T ss_pred             HHhCCCEEEEecccCChHHHHHHHHhcCCCEEEEChhhhHHHHhhc---ccCce-EEEccch----------------hh
Confidence            9999999999999999999999999999999999887665442211   11222 2222211                12


Q ss_pred             HHHHhcCccCCccCCCCCCCceEEEEecCCCCCCCceeeecchhHHHHhhhhhhhcccccCCCCCCcEEEEecChhHHHH
Q 006111          201 DEFLHLGKVNEMEILPPQPFNICTIMYTSGTSGDPKGVVLTHETIATFVSGVDLFLDQFEDKMTVDDVYLSFLPLAHILD  280 (660)
Q Consensus       201 ~~~~~~~~~~~~~~~~~~~~~~~~i~~TSGTTG~pK~v~~th~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~pl~~~~g  280 (660)
                      .++..... ...+.....++++++++|||||||.||+|.++|+++..........+     ++..+|+++..+|++|.++
T Consensus       132 ~~~~~~~~-~~~~~~~~~~~~~a~i~~TSGTTG~PKgv~~s~~~~~~~~~~~~~~~-----~~~~~d~~l~~~p~~~~~~  205 (540)
T PRK13388        132 AELVAAAG-ALTPHREVDAMDPFMLIFTSGTTGAPKAVRCSHGRLAFAGRALTERF-----GLTRDDVCYVSMPLFHSNA  205 (540)
T ss_pred             hhhhcccc-CcCCCCCCCCCCeEEEEECCCCCCCCCEEEecHHHHHHHHHHHHHHh-----CCCCCCEEEEeeCchhhcc
Confidence            22322111 11122235679999999999999999999999999988777766666     7888999999999999988


Q ss_pred             HHHH-HHHhhcCcEEEEecC-ChhhHHHHhhhhcCeEEEechHHHHHHHHHHHHHHHhhchHHHHHHHHHHHHHHHHHhh
Q 006111          281 RVIE-EYFFRRGASVGYYHG-DLNALRDDLMELKPTLLAGVPRVFEKIHEGIKKALEELRPLRRRIFDALYKYKLAWMNM  358 (660)
Q Consensus       281 ~~~~-l~~l~~G~~~v~~~~-~~~~~~~~i~~~~~t~~~~~p~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  358 (660)
                      +... +.++..|+++++.+. ++..+++.++++++|++..+|..+..+......                          
T Consensus       206 ~~~~~~~~l~~G~~~v~~~~~~~~~~~~~i~~~~vt~~~~~p~~l~~l~~~~~~--------------------------  259 (540)
T PRK13388        206 VMAGWAPAVASGAAVALPAKFSASGFLDDVRRYGATYFNYVGKPLAYILATPER--------------------------  259 (540)
T ss_pred             hHHHHHHHHHcCcEEEECCCCCHHHHHHHHHHhCCeEEEehHHHHHHHHhCCCC--------------------------
Confidence            8764 456889999988765 899999999999999999999998876532100                          


Q ss_pred             CCCCCCcchhhhHHHHHHHHHHhCCcEeEEEEccCCCCHHHHHHHHHhcCCceeeecCCCCCCCceecccCCCccccCcc
Q 006111          359 GYKQREASPLADLLAFRKVKARLGGRLRLVISGGAPLSTEVEEFLRVTCCAFLVQGYGLTETCGPTTVCFPDEMCMVGTA  438 (660)
Q Consensus       359 ~~~~~~~~~~~~~~~~~~~~~~~~~~lr~i~~~G~~l~~~~~~~~~~~~~~~v~~~YG~tE~~~~~~~~~~~~~~~~~~~  438 (660)
                              +  .         ....+++.+ + |+.+++.....+.+.+++++++.||+||++.++.....   ...+++
T Consensus       260 --------~--~---------~~~~~l~~~-~-G~~~~~~~~~~~~~~~~~~l~~~YG~tE~~~~~~~~~~---~~~~~v  315 (540)
T PRK13388        260 --------P--D---------DADNPLRVA-F-GNEASPRDIAEFSRRFGCQVEDGYGSSEGAVIVVREPG---TPPGSI  315 (540)
T ss_pred             --------c--c---------ccccceEEE-E-CCCCCHHHHHHHHHHhCCceecccccccccceeecCCC---CCCCCC
Confidence                    0  0         000256643 3 66678888888888889999999999999877654321   234789


Q ss_pred             CCCccCeeEE-----------eeecCCCCCCCCCCCCCceEEEc-cCCcccccCCCchhhhhcccCCccccCceEEECCC
Q 006111          439 GPVSVYSELR-----------LEEVPEMGYSPLDDPPCGEVCVR-GKTLFSGYYKNPDLTRESIIDGWFHTGDIGQILPN  506 (660)
Q Consensus       439 G~~~~~~~v~-----------ivd~~~~~~~~~~~~~~Gei~v~-g~~~~~gy~~~~~~~~~~~~~g~~~TGDl~~~~~~  506 (660)
                      |.|++++++.           ++| +++. .....++.|||+++ |++++.||++++..+.+.|.+|||+|||+|++|++
T Consensus       316 G~p~~g~~i~~~~~~~~~~~~~~d-~~g~-~~~~~~~~GEl~v~~g~~~~~gY~~~~~~t~~~~~~g~~~TGD~~~~~~d  393 (540)
T PRK13388        316 GRGAPGVAIYNPETLTECAVARFD-AHGA-LLNADEAIGELVNTAGAGFFEGYYNNPEATAERMRHGMYWSGDLAYRDAD  393 (540)
T ss_pred             CCCCCCcEEEcCCCCccccceecc-Cccc-cccCCCcceEEEEecCCcccccccCChHHHHHHhhcCceeccceEEEcCC
Confidence            9999997653           222 2222 11133568999998 99999999999999999998999999999999999


Q ss_pred             CcEEEEeccCCeeEcCCCeeecchhHHHHHhcCcCcceEEEEecCCC---CeEEEEEEcChhhHHHHHHHCCCCCcHHHH
Q 006111          507 GVVKIIDRKKNLIKISQGEYVALEYLENVYCVAPIIEDIWVYGDSLK---SMLVAVVVPCEEDTKKWAYSNGHAGSFLEL  583 (660)
Q Consensus       507 G~l~~~GR~~d~i~~~~G~~v~~~~iE~~l~~~p~V~~~~V~~~~~~---~~~~a~v~~~~~~~~~~~~~~~~~~~~~~~  583 (660)
                      |.+++.||.+|+|++ +|++|+|.+||++|.+||+|.+|+|++.++.   +.+++++++.++..        .       
T Consensus       394 g~l~i~GR~~d~i~~-~G~~v~p~eIE~~l~~~~~V~~~~v~g~~~~~~g~~~~~~v~~~~~~~--------~-------  457 (540)
T PRK13388        394 GWIYFAGRTADWMRV-DGENLSAAPIERILLRHPAINRVAVYAVPDERVGDQVMAALVLRDGAT--------F-------  457 (540)
T ss_pred             CcEEEeccCCceEEE-CCEEeCHHHHHHHHHhCCCceEEEEEEccCCCCCceeEEEEEECCCCc--------C-------
Confidence            999999999999997 8999999999999999999999999997754   36777787765420        0       


Q ss_pred             hccHHHHHHHHHHHHHHHHh-CCCCCceeeeEEEEecCCCCCCCCccccccccchHHHHHHH
Q 006111          584 CSLVQLQNYILSELKNAAER-NKLRGFEHIKGVILDPRPFDMERDLVTATLKKKRNKLLIYY  644 (660)
Q Consensus       584 ~~~~~~~~~~~~~l~~~~~~-~~l~~~~~p~~i~~~~~~~~~~~~P~t~~GKv~R~~l~~~~  644 (660)
                       ..        ++++++++. ..|+.|++|..+.++      +.+|+|++||++|++|+++.
T Consensus       458 -~~--------~~l~~~l~~~~~l~~~~~P~~~~~v------~~iP~t~~GKv~R~~L~~~~  504 (540)
T PRK13388        458 -DP--------DAFAAFLAAQPDLGTKAWPRYVRIA------ADLPSTATNKVLKRELIAQG  504 (540)
T ss_pred             -CH--------HHHHHHHHhhccCCcccCCcEEEEe------ccCCCCCcceeeHHhHHHhc
Confidence             11        122222221 369999999999886      44689999999999998865

>TIGR03205 pimA dicarboxylate--CoA ligase PimA

Probab=100.00  E-value=1.6e-59  Score=519.41  Aligned_cols=515  Identities=24%  Similarity=0.277  Sum_probs=395.2

Q ss_pred             CCCCCcHHHHHHHHHHhCCCCCceeeeccccCCCCCceEEeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEeCCchhHHHH
Q 006111           38 DSDLNTAWDIFSMSVQKYPGNRMLGWRPFVDGKFGPYVWKTYKEVYEEVLQIVSALRASGAEPGCRVGIYGANCPQWVEA  117 (660)
Q Consensus        38 ~~~~~ti~~~l~~~a~~~pd~~a~~~~~~~d~~~~~~~~~Ty~ql~~~v~~lA~~L~~~Gl~~gd~V~l~~~n~~e~~~~  117 (660)
                      +..+.++.+.|+++++.+|+++|+.+.   +      +++||.||.++++++|.+|.+.|+++||+|+++++|+++++++
T Consensus        17 ~~~~~~~~~~~~~~~~~~p~~~a~~~~---~------~~~ty~el~~~~~~~a~~L~~~gi~~g~~V~i~~~~~~~~~~~   87 (541)
T TIGR03205        17 TIARGTLPDLLSKAAADYGPRPALEFR---D------RPITYTELEAMAETAAAALLRAGYGKDASVALYLGNTPDHPIN   87 (541)
T ss_pred             CCCCCCHHHHHHHHHHHcCCCceEEEC---C------cEeeHHHHHHHHHHHHHHHHHcCCCCCCEEEEECCCChHHHHH
Confidence            345668999999999999999999865   3      4799999999999999999999999999999999999999999


Q ss_pred             HHHHHhCCCeEEecCCCCChhHHHHHHhcccceEEEEccchh--hhhhccccccccCccEEEEecCCcHHHHH---HHhh
Q 006111          118 MEACNALSLICVPLYDTLGPGAVNFILDHAEIDFVFVQDKKV--KELLSPDCRSAQRLRVMVCFTSLTAEQKE---MAVQ  192 (660)
Q Consensus       118 ~lA~~~~G~~~vpl~~~~~~~~l~~~l~~~~~~~ii~~~~~~--~~~~~~~~~~~~~~~~i~~~~~~~~~~~~---~~~~  192 (660)
                      ++||+++|++++|++|..+.+++..+++.++++++|+++...  ....+....  .....++..+........   ....
T Consensus        88 ~la~~~~G~~~v~l~~~~~~~~l~~~i~~~~~~~vi~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~  165 (541)
T TIGR03205        88 FFGALKAGARVVHLSPLDGERALSHKLSDSGARLLITSDLAALLPMALKFLEK--GLLDRLIVCEDDNWGKVGTPQAPIP  165 (541)
T ss_pred             HHHHHhcCeEEEecCCCCCHHHHHHHHhhcCceEEEEeCchhhhHHHHHhhhc--ccceEEEEecccccccccccccccC
Confidence            999999999999999999999999999999999999986321  111111110  112223332221100000   0000


Q ss_pred             CCcceeeHHHHHhcCccCCccCCCCCCCceEEEEecCCCCCCCceeeecchhHHHHhhhhhhhcccccCCCCCCcEEEEe
Q 006111          193 TGIKPYSWDEFLHLGKVNEMEILPPQPFNICTIMYTSGTSGDPKGVVLTHETIATFVSGVDLFLDQFEDKMTVDDVYLSF  272 (660)
Q Consensus       193 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~TSGTTG~pK~v~~th~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~  272 (660)
                      ......++.++..... .........++++++++|||||||.||+|+++|+++.....................+++++.
T Consensus       166 ~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~i~~TSGTTG~PK~v~~s~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~  244 (541)
T TIGR03205       166 ADPRIVTYADFVKGAA-APAEWPAVTPDDVALLQYTGGTTGLPKGAMLTHGNLTSAVSIYDVWGKPSRATRGDVERVICV  244 (541)
T ss_pred             CCcccccHHHHHhcCC-CCCCCCCCCccCeEEEEECCCCCCCCcEEEEeHHHHHHHHHHHHhhcccccccCCCCceEEEe
Confidence            1112344565554321 112223456789999999999999999999999998765542211100001123345789999


Q ss_pred             cChhHHHHHHH-HHHHhhcCcEEEEecC-ChhhHHHHhhhhcCeEEEechHHHHHHHHHHHHHHHhhchHHHHHHHHHHH
Q 006111          273 LPLAHILDRVI-EEYFFRRGASVGYYHG-DLNALRDDLMELKPTLLAGVPRVFEKIHEGIKKALEELRPLRRRIFDALYK  350 (660)
Q Consensus       273 ~pl~~~~g~~~-~l~~l~~G~~~v~~~~-~~~~~~~~i~~~~~t~~~~~p~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~  350 (660)
                      +|++|.+++.. .+.+++.|+++++... ++..+++.|.++++|++.++|+++..+.+...                   
T Consensus       245 ~p~~~~~~~~~~~~~~l~~g~~~~~~~~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~-------------------  305 (541)
T TIGR03205       245 LPLFHIYALTVILLRSLRRGDLISLHQRFDVAAVFRDIEEKRATVFPGVPTMWIALANDPS-------------------  305 (541)
T ss_pred             ccHHHHHHHHHHHHHHHhcCCEEEecCCCCHHHHHHHHHHcCCeEeechHHHHHHHHhCcc-------------------
Confidence            99999988776 5667889999888765 89999999999999999999999988754210                   


Q ss_pred             HHHHHHhhCCCCCCcchhhhHHHHHHHHHHhCCcEeEEEEccCCCCHHHHHHHHHhcCCceeeecCCCCCCCceecccCC
Q 006111          351 YKLAWMNMGYKQREASPLADLLAFRKVKARLGGRLRLVISGGAPLSTEVEEFLRVTCCAFLVQGYGLTETCGPTTVCFPD  430 (660)
Q Consensus       351 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lr~i~~~G~~l~~~~~~~~~~~~~~~v~~~YG~tE~~~~~~~~~~~  430 (660)
                                        ....++        +++|.++.||+++++++.+++.+.++.++++.||+||++..++.....
T Consensus       306 ------------------~~~~~~--------~~l~~i~~gg~~~~~~~~~~~~~~~~~~~~~~YG~TE~~~~~~~~~~~  359 (541)
T TIGR03205       306 ------------------LEKRDL--------SSLATIGSGGAPLPVEVANFFERKTGLKLKSGWGMTETCSPGTGHPPE  359 (541)
T ss_pred             ------------------ccccCc--------cccceEEEccccCCHHHHHHHHHHhCCCeecccccccCCcccccCCCC
Confidence                              000011        389999999999999999999988899999999999999877665443


Q ss_pred             CccccCccCCCccCeeEEeeecCCCCCCCCCCCCCceEEEccCCcccccCCCchhhhhcccCCccccCceEEECCCCcEE
Q 006111          431 EMCMVGTAGPVSVYSELRLEEVPEMGYSPLDDPPCGEVCVRGKTLFSGYYKNPDLTRESIIDGWFHTGDIGQILPNGVVK  510 (660)
Q Consensus       431 ~~~~~~~~G~~~~~~~v~ivd~~~~~~~~~~~~~~Gei~v~g~~~~~gy~~~~~~~~~~~~~g~~~TGDl~~~~~~G~l~  510 (660)
                      .....+++|.+++++.+++++.+++ ..++..++.|||+++|++++.||++++..+.+.|.++||+|||+++++++|+++
T Consensus       360 ~~~~~~~~G~~~~~~~~~v~~~d~~-~~~~~~g~~Gel~v~~~~~~~gy~~~~~~~~~~~~~~~~~TGD~~~~~~~g~l~  438 (541)
T TIGR03205       360 GPDKPGSIGLMLPGIELDVVSLDDP-TKVLPPGEVGELRIRGPNVTRGYWNRPEESAEAFVGDRFLTGDIGYMDTDGYFF  438 (541)
T ss_pred             CCCCCCCcceeccCceeEEEecCCC-CccCCCCCeeEEEEecCCccccccCChhhhHhhhccCCcccCceEEEcCCceEE
Confidence            3334478999999999998762222 234556789999999999999999999999999989999999999999999999


Q ss_pred             EEeccCCeeEcCCCeeecchhHHHHHhcCcCcceEEEEecCCC---CeEEEEEEcChhhHHHHHHHCCCCCcHHHHhccH
Q 006111          511 IIDRKKNLIKISQGEYVALEYLENVYCVAPIIEDIWVYGDSLK---SMLVAVVVPCEEDTKKWAYSNGHAGSFLELCSLV  587 (660)
Q Consensus       511 ~~GR~~d~i~~~~G~~v~~~~iE~~l~~~p~V~~~~V~~~~~~---~~~~a~v~~~~~~~~~~~~~~~~~~~~~~~~~~~  587 (660)
                      +.||.+|+|++ +|++|+|.+||+.+.+|+.|.+++|++.+++   +.+++++++.++..         ..      .  
T Consensus       439 i~GR~~~~i~~-~G~~i~~~eIE~~l~~~~~v~~~~v~~~~~~~~~~~~~~~v~~~~~~~---------~~------~--  500 (541)
T TIGR03205       439 LVDRKKDMIIS-GGFNVYPQMIEQAIYEHPGVQEVIVIGIPDQYRGEAAKAFVKLRPGAK---------PF------S--  500 (541)
T ss_pred             EEccccCeEEE-CCEEECHHHHHHHHHhCCCeeeEEEEecCCcccCceEEEEEEECCCCC---------cC------C--
Confidence            99999999996 8999999999999999999999999987644   47888888775420         00      0  


Q ss_pred             HHHHHHHHHHHHHHHhCCCCCceeeeEEEEecCCCCCCCCccccccccchHHHH
Q 006111          588 QLQNYILSELKNAAERNKLRGFEHIKGVILDPRPFDMERDLVTATLKKKRNKLL  641 (660)
Q Consensus       588 ~~~~~~~~~l~~~~~~~~l~~~~~p~~i~~~~~~~~~~~~P~t~~GKv~R~~l~  641 (660)
                            .+++.++++ +.|+.|++|..|.++++      +|+|++||++|++|+
T Consensus       501 ------~~~l~~~~~-~~l~~~~~P~~i~~~~~------iP~t~~gK~~r~~l~  541 (541)
T TIGR03205       501 ------LDELRAFLA-GKLGKHELPVAVEFVDE------LPRTPVGKLSRHELR  541 (541)
T ss_pred             ------HHHHHHHHH-hhcccccCCcEEEEecc------CCCCcccceeHhhcC
Confidence                  123444444 67999999999999743      589999999999873

PimA, a member of a large family of acyl-CoA ligases, is found in a characteristic operon pimFABCDE for the metabolism of pimelate and related compounds. It is found, so far, in Bradyrhizobium japonicum and several strains of Rhodopseudomonas palustris. PimA from R. palustris was shown to be active as a CoA ligase for C(7) to C(14) dicarboxylates and fatty acids.

>TIGR01734 D-ala-DACP-lig D-alanine--poly(phosphoribitol) ligase, subunit 1

Probab=100.00  E-value=7.2e-60  Score=518.17  Aligned_cols=484  Identities=18%  Similarity=0.202  Sum_probs=389.6

Q ss_pred             cHHHHHHHHHHhCCCCCceeeeccccCCCCCceEEeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEeCCchhHHHHHHHHH
Q 006111           43 TAWDIFSMSVQKYPGNRMLGWRPFVDGKFGPYVWKTYKEVYEEVLQIVSALRASGAEPGCRVGIYGANCPQWVEAMEACN  122 (660)
Q Consensus        43 ti~~~l~~~a~~~pd~~a~~~~~~~d~~~~~~~~~Ty~ql~~~v~~lA~~L~~~Gl~~gd~V~l~~~n~~e~~~~~lA~~  122 (660)
                      ++.+.|.+.++.+|+++|+...   +      +++||.||.+++.++|..|.+.|+++||+|+++++|+.++++++|||+
T Consensus         1 ~~~~~l~~~a~~~p~~~a~~~~---~------~~~ty~el~~~~~~~a~~L~~~g~~~~~~V~i~~~~~~~~~~~~la~~   71 (502)
T TIGR01734         1 KLIEAIQAFAETYPQTIAYRYQ---G------QELTYQQLKEQSDRLAAFIQKRILPKKSPIIVYGHMEPHMLVAFLGSI   71 (502)
T ss_pred             CHHHHHHHHHHHCCCceEEEcC---C------cEEeHHHHHHHHHHHHHHHHHhCCCCCCeEEEEeCCCHHHHHHHHHHH
Confidence            5789999999999999999764   3      489999999999999999999999999999999999999999999999


Q ss_pred             hCCCeEEecCCCCChhHHHHHHhcccceEEEEccchhhhhhccccccccCccEEEEecCCcHHHHHHHhhCCcceeeHHH
Q 006111          123 ALSLICVPLYDTLGPGAVNFILDHAEIDFVFVQDKKVKELLSPDCRSAQRLRVMVCFTSLTAEQKEMAVQTGIKPYSWDE  202 (660)
Q Consensus       123 ~~G~~~vpl~~~~~~~~l~~~l~~~~~~~ii~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~  202 (660)
                      ++|++++|+++.++.+++..+++..++++++++.........        .. ++.++.                  ...
T Consensus        72 ~~G~~~v~~~~~~~~~~~~~~~~~~~~~~ii~~~~~~~~~~~--------~~-~~~~~~------------------~~~  124 (502)
T TIGR01734        72 KSGHAYIPVDTSIPSERIEMIIEAAGPELVIHTAELSIDAVG--------TQ-IITLSA------------------LEQ  124 (502)
T ss_pred             HhCCEEeCCCCcChHHHHHHHHHhcCCCEEEecccccccccC--------Cc-eEEchH------------------hhh
Confidence            999999999999999999999999999999998765332211        11 111111                  011


Q ss_pred             HHhcCccCCccCCCCCCCceEEEEecCCCCCCCceeeecchhHHHHhhhhhhhcccccCCCCCCcEEEEecChhHHHHHH
Q 006111          203 FLHLGKVNEMEILPPQPFNICTIMYTSGTSGDPKGVVLTHETIATFVSGVDLFLDQFEDKMTVDDVYLSFLPLAHILDRV  282 (660)
Q Consensus       203 ~~~~~~~~~~~~~~~~~~~~~~i~~TSGTTG~pK~v~~th~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~pl~~~~g~~  282 (660)
                      +.... ..........++++++++|||||||.||+|.++|+++..........+     +...+++++...|++|..++.
T Consensus       125 ~~~~~-~~~~~~~~~~~~~~~~il~TSGTTG~PK~v~~s~~~~~~~~~~~~~~~-----~~~~~~~~l~~~p~~~~~~~~  198 (502)
T TIGR01734       125 AETSG-GPVSFDHAVKGDDNYYIIYTSGSTGNPKGVQISHDNLVSFTNWMLADF-----PLSEGKQFLNQAPFSFDLSVM  198 (502)
T ss_pred             hhhhc-CCccccccCCCCCeEEEEECCCCCCCCCEEEEecHHHHHHHHHHHHhC-----CCCCCceEEeecCceechhHH
Confidence            11111 111112234678999999999999999999999999998887766655     778899999999999999888


Q ss_pred             HHHHHhhcCcEEEEecC----ChhhHHHHhhhhcCeEEEechHHHHHHHHHHHHHHHhhchHHHHHHHHHHHHHHHHHhh
Q 006111          283 IEEYFFRRGASVGYYHG----DLNALRDDLMELKPTLLAGVPRVFEKIHEGIKKALEELRPLRRRIFDALYKYKLAWMNM  358 (660)
Q Consensus       283 ~~l~~l~~G~~~v~~~~----~~~~~~~~i~~~~~t~~~~~p~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  358 (660)
                      ..+.++..|+++++.+.    ++..+++.+.+++++.+.++|.++..+......                          
T Consensus       199 ~~~~~l~~G~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~p~~~~~~l~~~~~--------------------------  252 (502)
T TIGR01734       199 DLYPCLASGGTLHCLDKDITNNFKLLFEELPKTGLNVWVSTPSFVDMCLLDPNF--------------------------  252 (502)
T ss_pred             HHHHHHHCCCEEEEcCHHHhcCHHHHHHHHHHcCCeEEEEChhHHHHHHhcccc--------------------------
Confidence            78889999999998764    788999999999999999999998776432110                          


Q ss_pred             CCCCCCcchhhhHHHHHHHHHHhCCcEeEEEEccCCCCHHHHHHHHHhc-CCceeeecCCCCCCCceecccCC----Ccc
Q 006111          359 GYKQREASPLADLLAFRKVKARLGGRLRLVISGGAPLSTEVEEFLRVTC-CAFLVQGYGLTETCGPTTVCFPD----EMC  433 (660)
Q Consensus       359 ~~~~~~~~~~~~~~~~~~~~~~~~~~lr~i~~~G~~l~~~~~~~~~~~~-~~~v~~~YG~tE~~~~~~~~~~~----~~~  433 (660)
                                 ..        ...++++.++++|++++..+.+.+.+.+ ++.+++.||+||+++.++.....    ...
T Consensus       253 -----------~~--------~~~~~l~~~~~~G~~~~~~~~~~~~~~~~~~~~~~~yG~tE~~~~~~~~~~~~~~~~~~  313 (502)
T TIGR01734       253 -----------NQ--------ENYPHLTHFLFCGEELPVKTAKALLERFPKATIYNTYGPTEATVAVTSVKITQEILDQY  313 (502)
T ss_pred             -----------cc--------ccCCcccEEEEcCCcCCHHHHHHHHHHCCCcEEEeCccCCcceEEEEEEEccccccccC
Confidence                       00        0114899999999999999999998887 78999999999998655433221    122


Q ss_pred             ccCccCCCccCeeEEeeecCCCCCCCCCCCCCceEEEccCCcccccCCCchhhhhccc--C--CccccCceEEECCCCcE
Q 006111          434 MVGTAGPVSVYSELRLEEVPEMGYSPLDDPPCGEVCVRGKTLFSGYYKNPDLTRESII--D--GWFHTGDIGQILPNGVV  509 (660)
Q Consensus       434 ~~~~~G~~~~~~~v~ivd~~~~~~~~~~~~~~Gei~v~g~~~~~gy~~~~~~~~~~~~--~--g~~~TGDl~~~~~~G~l  509 (660)
                      ...++|.+.++++++|++ +++.  +++.|+.|||+++|+.++.||+++++.+...|.  +  +||+|||+|++|++ ++
T Consensus       314 ~~~~vg~~~~~~~~~i~~-~~~~--~~~~g~~Gel~v~g~~~~~gy~~~~~~~~~~~~~~~~~~~~~TGDlg~~~~~-~l  389 (502)
T TIGR01734       314 PRLPIGFAKPDMNLFIMD-EEGE--PLPEGEKGEIVIVGPSVSKGYLNNPEKTAEAFFSHEGQPAYRTGDAGTITDG-QL  389 (502)
T ss_pred             CccccccccCCCEEEEEC-CCCC--CCCCCCeeEEEEccccccccccCCcccchHhheeCCCcEEEECCCEEEEECC-EE
Confidence            335799999999999999 6654  344568999999999999999999998888762  3  59999999999866 99


Q ss_pred             EEEeccCCeeEcCCCeeecchhHHHHHhcCcCcceEEEEecC--C--CCeEEEEEEcChhhHHHHHHHCCCCCcHHHHhc
Q 006111          510 KIIDRKKNLIKISQGEYVALEYLENVYCVAPIIEDIWVYGDS--L--KSMLVAVVVPCEEDTKKWAYSNGHAGSFLELCS  585 (660)
Q Consensus       510 ~~~GR~~d~i~~~~G~~v~~~~iE~~l~~~p~V~~~~V~~~~--~--~~~~~a~v~~~~~~~~~~~~~~~~~~~~~~~~~  585 (660)
                      +++||.+|+|++ +|++|+|.+||+.+.++|.|.+|+|++..  .  .+.++++|++......                .
T Consensus       390 ~i~GR~~d~i~~-~G~~v~~~~IE~~l~~~~~v~~~~vv~~~~~~~~~~~~~~~v~~~~~~~~----------------~  452 (502)
T TIGR01734       390 FYQGRLDFQIKL-HGYRIELEDIEFNLRQSSYIESAVVVPKYNKDHKVEYLIAAIVPETEDFE----------------K  452 (502)
T ss_pred             EEeccccCeEEE-CcEEeCHHHHHHHHHcCCCccEEEEEEEEcCCCCceEEEEEEEecccccc----------------c
Confidence            999999999997 89999999999999999999999999843  2  2478888888764310                1


Q ss_pred             cHHHHHHHHHHHHHHHHhCCCCCceeeeEEEEecCCCCCCCCccccccccchHHHHHHHH
Q 006111          586 LVQLQNYILSELKNAAERNKLRGFEHIKGVILDPRPFDMERDLVTATLKKKRNKLLIYYQ  645 (660)
Q Consensus       586 ~~~~~~~~~~~l~~~~~~~~l~~~~~p~~i~~~~~~~~~~~~P~t~~GKv~R~~l~~~~~  645 (660)
                      ..    .+.+++++.++ +.|+.|.+|+.+++++      .+|+|++||++|++|++++.
T Consensus       453 ~~----~~~~~i~~~~~-~~l~~~~~P~~~~~v~------~lP~t~~gKv~r~~l~~~~~  501 (502)
T TIGR01734       453 EF----QLTKAIKKELK-KSLPAYMIPRKFIYRD------QLPLTANGKIDRKALAEEVN  501 (502)
T ss_pred             ch----hhHHHHHHHHh-hhChhhcCCcEEEEcc------ccCCCCCCcccHHHHHHhhc
Confidence            11    22234444444 6899999999999874      45899999999999998764

This model represents the enzyme (also called D-alanine-D-alanyl carrier protein ligase) which activates D-alanine as an adenylate via the reaction D-ala + ATP - D-ala-AMP + PPi, and further catalyzes the condensation of the amino acid adenylate with the D-alanyl carrier protein (D-ala-ACP). The D-alanine is then further transferred to teichoic acid in the biosynthesis of lipoteichoic acid (LTA) and wall teichoic acid (WTA) in gram positive bacteria, both polysacchatides.

>KOG1175 consensus Acyl-CoA synthetase [Lipid transport and metabolism]

Probab=100.00  E-value=1.7e-60  Score=500.40  Aligned_cols=516  Identities=20%  Similarity=0.214  Sum_probs=417.5

Q ss_pred             CCCCCCCcHHHHHHHHH-H-hCCCCCceeeeccccCCCCCceEEeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEeCCchh
Q 006111           36 SVDSDLNTAWDIFSMSV-Q-KYPGNRMLGWRPFVDGKFGPYVWKTYKEVYEEVLQIVSALRASGAEPGCRVGIYGANCPQ  113 (660)
Q Consensus        36 ~~~~~~~ti~~~l~~~a-~-~~pd~~a~~~~~~~d~~~~~~~~~Ty~ql~~~v~~lA~~L~~~Gl~~gd~V~l~~~n~~e  113 (660)
                      +++..+.++.+.+..+. . ..++.+++++.   +..++....+||.|+.+++.++|..|.+.|+++||+|++++|+.++
T Consensus        57 w~~g~~ln~~~n~~~~~~~~~~~~~~a~~~~---~~~~~~~~~~t~~el~~~v~~~a~~l~~~g~~kGD~V~~~mPm~~e  133 (626)
T KOG1175|consen   57 WFPGAFLNACYNCLDRHIKEKGGDKVAIIFE---GNEGGDTEVWTYKELLDQVVRLANVLRKCGLKKGDTVAIYMPMIPE  133 (626)
T ss_pred             ccccchhhhhHhhhhhhhhhcCCCCcEEEEE---ecCCCceEEEEHHHHHHHHHHHHHHHHhcCCCCCcEEEEeccCChH
Confidence            67778888777765544 2 35899999887   4455555569999999999999999998899999999999999999


Q ss_pred             HHHHHHHHHhCCCeEEecCCCCChhHHHHHHhcccceEEEEccchhhhhhcccccc-----c--------cCccEEEEec
Q 006111          114 WVEAMEACNALSLICVPLYDTLGPGAVNFILDHAEIDFVFVQDKKVKELLSPDCRS-----A--------QRLRVMVCFT  180 (660)
Q Consensus       114 ~~~~~lA~~~~G~~~vpl~~~~~~~~l~~~l~~~~~~~ii~~~~~~~~~~~~~~~~-----~--------~~~~~i~~~~  180 (660)
                      ++++++||.++|++.+++-...++.++...++.++++++|+.+.............     +        .....+++..
T Consensus       134 ~~ia~lA~~r~Gai~~~v~~~fs~~~l~~Rl~~~~~k~i~t~d~~~~~~k~i~~~~~~~~a~~~~~~~~~~~~~~~~~~~  213 (626)
T KOG1175|consen  134 AVIAMLACARIGAIHSSVFAGFSAKELLDRLQDSKAKVIITQDVVARGGKSINLKCIVLEALLLVSDKSRPVWLDLIVSR  213 (626)
T ss_pred             HHHHHHHHhhcCeEEEEeeccCCHHHHHHHHHhcCCCEEEEEeeeccCCCccchhhhHHHHhhcccccccccceeeEEec
Confidence            99999999999999999999999999999999999999999886443221111000     0        0011111111


Q ss_pred             CCcHHHHHHHhhCCcceeeHHHHHhcCccCCccCCCCCCCceEEEEecCCCCCCCceeeecchhH-HHHhhhhhhhcccc
Q 006111          181 SLTAEQKEMAVQTGIKPYSWDEFLHLGKVNEMEILPPQPFNICTIMYTSGTSGDPKGVVLTHETI-ATFVSGVDLFLDQF  259 (660)
Q Consensus       181 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~TSGTTG~pK~v~~th~~l-~~~~~~~~~~~~~~  259 (660)
                      ..             ....|+++.... ....++.+.+.+|+.+|+|||||||.||++.+++... +..+......+   
T Consensus       214 ~~-------------~d~~~~~~~~~a-~~~~~~~~~~~edpl~IlfTSGtTg~PK~v~ht~~g~ll~~~~~~~~~~---  276 (626)
T KOG1175|consen  214 RN-------------RDLFWSLELKKA-SPEHPCVPVKAEDPLFILFTSGTTGKPKGVIHTTGGYLLGAALTSRYHF---  276 (626)
T ss_pred             cc-------------ccccHHHHhhhc-CCCCCceecCccCceEEEecCCCCCCCCceeeccCcchHHHhhhcceec---
Confidence            10             123566555544 3334477889999999999999999999999987754 44555555555   


Q ss_pred             cCCCCCCcEEEEecChhHHHHHHH-HHHHhhcCcEEEEecC---ChhhHHHHhhhhcCeEEEechHHHHHHHHHHHHHHH
Q 006111          260 EDKMTVDDVYLSFLPLAHILDRVI-EEYFFRRGASVGYYHG---DLNALRDDLMELKPTLLAGVPRVFEKIHEGIKKALE  335 (660)
Q Consensus       260 ~~~~~~~~~~l~~~pl~~~~g~~~-~l~~l~~G~~~v~~~~---~~~~~~~~i~~~~~t~~~~~p~~~~~l~~~~~~~~~  335 (660)
                        +++++|++++...+.|+.+... .+.+++.|+++++++.   ++..+++.+.++++|++++.|+.++.+.+.......
T Consensus       277 --d~q~~dv~~~~~d~GWi~g~~~~~~gpl~~Ga~~vl~~g~p~~~~~~~~~v~k~~it~l~t~pt~~r~l~~~~~~~~~  354 (626)
T KOG1175|consen  277 --DLQPSDVLWCASDLGWITGHSYVLYGPLLNGATVVLYEGPPFDPGRIWKILDKYKVTVLYTAPTAYRLLRRLGQEDVT  354 (626)
T ss_pred             --cCCCcceEEEecccCeeeccchhhhhhhhcCcEEEEEcCCCCChhhhhhhHhhcceEEEEeccHHHHHHHHhcccccc
Confidence              8999999999999999999887 5668999999999975   789999999999999999999999987553222111


Q ss_pred             hhchHHHHHHHHHHHHHHHHHhhCCCCCCcchhhhHHHHHHHHHHhCCcEeEEEEccCCCCHHHHHHHHHhcCC-ceeee
Q 006111          336 ELRPLRRRIFDALYKYKLAWMNMGYKQREASPLADLLAFRKVKARLGGRLRLVISGGAPLSTEVEEFLRVTCCA-FLVQG  414 (660)
Q Consensus       336 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lr~i~~~G~~l~~~~~~~~~~~~~~-~v~~~  414 (660)
                                                         ..++        ++||++.++||+++++...++.+.++. +|++.
T Consensus       355 -----------------------------------~~~~--------~sLk~~~S~Gepi~~~~~ew~~~~~~~~pv~e~  391 (626)
T KOG1175|consen  355 -----------------------------------SYSL--------KSLRTCGSVGEPINPEAWEWWKRVTGLDPIYET  391 (626)
T ss_pred             -----------------------------------cccc--------ceEEEEeecCccCCcchHHHHHHhcCccchhhc
Confidence                                               1111        289999999999999999999999987 79999


Q ss_pred             cCCCCCCCceecccCCC-ccccCccCCCccCeeEEeeecCCCCCCCCCCCCCceEEEcc--C-CcccccCCCchhhhhcc
Q 006111          415 YGLTETCGPTTVCFPDE-MCMVGTAGPVSVYSELRLEEVPEMGYSPLDDPPCGEVCVRG--K-TLFSGYYKNPDLTRESI  490 (660)
Q Consensus       415 YG~tE~~~~~~~~~~~~-~~~~~~~G~~~~~~~v~ivd~~~~~~~~~~~~~~Gei~v~g--~-~~~~gy~~~~~~~~~~~  490 (660)
                      ||+||+|+.+..+..+. ...+++.+.|.+|+.+.|.| +++...+... +.|+|+++.  | +.+++|++|++.-...+
T Consensus       392 ~~qtEtG~~~i~~~~g~~p~~pg~~~~p~~g~~v~i~d-e~g~~~~~~~-~~G~l~~~~~~P~~~~r~~~~n~erf~~~y  469 (626)
T KOG1175|consen  392 YGQTETGGICITPKPGKLPIKPGSAGKPFPGYDVQILD-ENGNELPPST-GNGELRLKPPWPPGMFRTLWGNHERFRAAY  469 (626)
T ss_pred             eeeeccCceeeeccCCCCCcCccccCCCCCCcceEEEC-CCCCCcCCCC-ceeEEEEeCCCCccccccccCCHHHhhhhh
Confidence            99999999999888877 67779999999999999999 7666555544 789999997  3 77899999998444443


Q ss_pred             ---cCCccccCceEEECCCCcEEEEeccCCeeEcCCCeeecchhHHHHHhcCcCcceEEEEecCCC---CeEEEEEEcCh
Q 006111          491 ---IDGWFHTGDIGQILPNGVVKIIDRKKNLIKISQGEYVALEYLENVYCVAPIIEDIWVYGDSLK---SMLVAVVVPCE  564 (660)
Q Consensus       491 ---~~g~~~TGDl~~~~~~G~l~~~GR~~d~i~~~~G~~v~~~~iE~~l~~~p~V~~~~V~~~~~~---~~~~a~v~~~~  564 (660)
                         ..|||.|||.+++|+||++++.||.||+|++ +|.++++.|||+++.+||.|.|++|+|.+++   +.+.|||++.+
T Consensus       470 f~k~pg~y~tGD~~~rd~dGY~~i~GR~DDviNv-sGhRigtaEIE~al~~hp~VaEsAvVg~p~~~~ge~v~aFvvl~~  548 (626)
T KOG1175|consen  470 FKKFPGYYFTGDGGRRDEDGYYWILGRVDDVINV-SGHRIGTAEIESALVEHPAVAESAVVGSPDPIKGEVVLAFVVLKS  548 (626)
T ss_pred             cccCCceEEecCceEEcCCceEEEEecccccccc-cceeecHHHHHHHHhhCcchhheeeecCCCCCCCeEEEEEEEEcC
Confidence               3899999999999999999999999999997 7999999999999999999999999998765   59999999998


Q ss_pred             hhHHHHHHHCCCCCcHHHHhccHHHHHHHHHHHHHHHHhCCCCCceeeeEEEEecCCCCCCCCccccccccchHHHHHHH
Q 006111          565 EDTKKWAYSNGHAGSFLELCSLVQLQNYILSELKNAAERNKLRGFEHIKGVILDPRPFDMERDLVTATLKKKRNKLLIYY  644 (660)
Q Consensus       565 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~l~~~~~p~~i~~~~~~~~~~~~P~t~~GKv~R~~l~~~~  644 (660)
                      +..                 ...    .+.++|+.+.+ ..+.++..|+.|.+++.      +|+|.+||+.|+.||+..
T Consensus       549 g~~-----------------~~~----~L~kel~~~VR-~~igp~a~P~~I~~v~~------LPkTrSGKimRr~lrki~  600 (626)
T KOG1175|consen  549 GSH-----------------DPE----QLTKELVKHVR-SVIGPYAVPRLIVFVPG------LPKTRSGKIMRRALRKIA  600 (626)
T ss_pred             CCC-----------------ChH----HHHHHHHHHHH-hhcCcccccceeEecCC------CCccccchhHHHHHHHHh
Confidence            741                 233    44445555554 78899999999999854      489999999999999877


Q ss_pred             HHH
Q 006111          645 QVE  647 (660)
Q Consensus       645 ~~~  647 (660)
                      ..+
T Consensus       601 ~g~  603 (626)
T KOG1175|consen  601 SGK  603 (626)
T ss_pred             ccC
Confidence            554

>PRK06710 long-chain-fatty-acid--CoA ligase; Validated

Probab=100.00  E-value=2e-59  Score=521.23  Aligned_cols=512  Identities=23%  Similarity=0.296  Sum_probs=392.5

Q ss_pred             CCCcHHHHHHHHHHhCCCCCceeeeccccCCCCCceEEeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEeCCchhHHHHHH
Q 006111           40 DLNTAWDIFSMSVQKYPGNRMLGWRPFVDGKFGPYVWKTYKEVYEEVLQIVSALRASGAEPGCRVGIYGANCPQWVEAME  119 (660)
Q Consensus        40 ~~~ti~~~l~~~a~~~pd~~a~~~~~~~d~~~~~~~~~Ty~ql~~~v~~lA~~L~~~Gl~~gd~V~l~~~n~~e~~~~~l  119 (660)
                      ..+++.+.|...++.+|+++|+++.   +      +.+||.||.+++.++|.+|.+.|+++||+|+++++|++++++++|
T Consensus        22 ~~~~~~~~~~~~a~~~p~~~a~~~~---~------~~~ty~eL~~~~~~la~~L~~~gv~~gd~V~i~~~~~~~~~~~~l   92 (563)
T PRK06710         22 DIQPLHKYVEQMASRYPEKKALHFL---G------KDITFSVFHDKVKRFANYLQKLGVEKGDRVAIMLPNCPQAVIGYY   92 (563)
T ss_pred             CcccHHHHHHHHHHHCCCceEEEec---C------eeecHHHHHHHHHHHHHHHHHcCCCCCCEEEEECCCChHHHHHHH
Confidence            3478999999999999999999875   3      579999999999999999999999999999999999999999999


Q ss_pred             HHHhCCCeEEecCCCCChhHHHHHHhcccceEEEEccchhhhhhccccccccCccEEEEec--CCcHH-HH---HHHh--
Q 006111          120 ACNALSLICVPLYDTLGPGAVNFILDHAEIDFVFVQDKKVKELLSPDCRSAQRLRVMVCFT--SLTAE-QK---EMAV--  191 (660)
Q Consensus       120 A~~~~G~~~vpl~~~~~~~~l~~~l~~~~~~~ii~~~~~~~~~~~~~~~~~~~~~~i~~~~--~~~~~-~~---~~~~--  191 (660)
                      ||+++|++++|++|..+.+++..+++.++++++++++...........  ......++...  ..... ..   ....  
T Consensus        93 A~~~~G~~~vpi~p~~~~~~l~~~l~~~~~~~ii~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  170 (563)
T PRK06710         93 GTLLAGGIVVQTNPLYTERELEYQLHDSGAKVILCLDLVFPRVTNVQS--ATKIEHVIVTRIADFLPFPKNLLYPFVQKK  170 (563)
T ss_pred             HHHHcCeEEeccCcccCHHHHHHHHhccCCeEEEEeccchhhhhccch--hhccceeEEeccccccccccccccchhhcc
Confidence            999999999999999999999999999999999998765443322110  01111121110  00000 00   0000  


Q ss_pred             --------hCCcceeeHHHHHhcCccCCccCCCCCCCceEEEEecCCCCCCCceeeecchhHHHHhhhhhhhcccccCCC
Q 006111          192 --------QTGIKPYSWDEFLHLGKVNEMEILPPQPFNICTIMYTSGTSGDPKGVVLTHETIATFVSGVDLFLDQFEDKM  263 (660)
Q Consensus       192 --------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~TSGTTG~pK~v~~th~~l~~~~~~~~~~~~~~~~~~  263 (660)
                              ........|..+.... ..........++++++++|||||||.||+|.++|+++..........+    ...
T Consensus       171 ~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~a~i~~TSGTTG~PK~v~~s~~~l~~~~~~~~~~~----~~~  245 (563)
T PRK06710        171 QSNLVVKVSESETIHLWNSVEKEV-NTGVEVPCDPENDLALLQYTGGTTGFPKGVMLTHKNLVSNTLMGVQWL----YNC  245 (563)
T ss_pred             cccccccccccchhhhhhhhhhcc-ccccccccCCCCCEEEEEcCCCCCCCCceEEEehHHHHHHHHHHHhhc----cCC
Confidence                    0000000122221111 011111122457899999999999999999999999975543322211    022


Q ss_pred             -CCCcEEEEecChhHHHHHHH-HHHHhhcCcEEEEecC-ChhhHHHHhhhhcCeEEEechHHHHHHHHHHHHHHHhhchH
Q 006111          264 -TVDDVYLSFLPLAHILDRVI-EEYFFRRGASVGYYHG-DLNALRDDLMELKPTLLAGVPRVFEKIHEGIKKALEELRPL  340 (660)
Q Consensus       264 -~~~~~~l~~~pl~~~~g~~~-~l~~l~~G~~~v~~~~-~~~~~~~~i~~~~~t~~~~~p~~~~~l~~~~~~~~~~~~~~  340 (660)
                       ..++++++++|++|.+++.. .+.+++.|+++++.+. ++..+++.|+++++|++.++|+++..+.+...         
T Consensus       246 ~~~~~~~l~~~p~~~~~g~~~~~~~~l~~G~~~~~~~~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~---------  316 (563)
T PRK06710        246 KEGEEVVLGVLPFFHVYGMTAVMNLSIMQGYKMVLIPKFDMKMVFEAIKKHKVTLFPGAPTIYIALLNSPL---------  316 (563)
T ss_pred             CCCCceEEEeCchHHHHHHHHHHHHHHHcCCeEEEcCCCCHHHHHHHHHHcCCeEEeccHHHHHHHHcCCc---------
Confidence             34568899999999998865 4567889999988765 89999999999999999999999988754210         


Q ss_pred             HHHHHHHHHHHHHHHHhhCCCCCCcchhhhHHHHHHHHHHhCCcEeEEEEccCCCCHHHHHHHHHhcCCceeeecCCCCC
Q 006111          341 RRRIFDALYKYKLAWMNMGYKQREASPLADLLAFRKVKARLGGRLRLVISGGAPLSTEVEEFLRVTCCAFLVQGYGLTET  420 (660)
Q Consensus       341 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lr~i~~~G~~l~~~~~~~~~~~~~~~v~~~YG~tE~  420 (660)
                                                  ....++        +++|.+++||+++++++.+++.+.++.++++.||+||+
T Consensus       317 ----------------------------~~~~~~--------~~lr~v~~gg~~~~~~~~~~~~~~~~~~~~~~YG~tE~  360 (563)
T PRK06710        317 ----------------------------LKEYDI--------SSIRACISGSAPLPVEVQEKFETVTGGKLVEGYGLTES  360 (563)
T ss_pred             ----------------------------cccCCh--------hhhhheeeCCCcCCHHHHHHHHHhhCCCEecccccccC
Confidence                                        001111        38899999999999999999999889999999999999


Q ss_pred             CCceecccCCCccccCccCCCccCeeEEeeecCCCCCCCCCCCCCceEEEccCCcccccCCCchhhhhcccCCccccCce
Q 006111          421 CGPTTVCFPDEMCMVGTAGPVSVYSELRLEEVPEMGYSPLDDPPCGEVCVRGKTLFSGYYKNPDLTRESIIDGWFHTGDI  500 (660)
Q Consensus       421 ~~~~~~~~~~~~~~~~~~G~~~~~~~v~ivd~~~~~~~~~~~~~~Gei~v~g~~~~~gy~~~~~~~~~~~~~g~~~TGDl  500 (660)
                      +.++..........++++|.+++++.+++++ ++++ .+++.|+.|||+++|+.++.||+++++.+...|.+|||+|||+
T Consensus       361 ~~~~~~~~~~~~~~~~~~G~~~~~~~~~i~~-~~~~-~~~~~g~~Gel~v~g~~~~~gY~~~~~~~~~~~~~g~~~TGD~  438 (563)
T PRK06710        361 SPVTHSNFLWEKRVPGSIGVPWPDTEAMIMS-LETG-EALPPGEIGEIVVKGPQIMKGYWNKPEETAAVLQDGWLHTGDV  438 (563)
T ss_pred             ccccccCcccccccCCccCCCCCCCeEEEEE-CCCC-ccCCCCCceEEEEecCccchhhhCChHHHhhhcccCcccccce
Confidence            9865544332333347899999999999998 4433 3455668999999999999999999999999899999999999


Q ss_pred             EEECCCCcEEEEeccCCeeEcCCCeeecchhHHHHHhcCcCcceEEEEecCCC---CeEEEEEEcChhhHHHHHHHCCCC
Q 006111          501 GQILPNGVVKIIDRKKNLIKISQGEYVALEYLENVYCVAPIIEDIWVYGDSLK---SMLVAVVVPCEEDTKKWAYSNGHA  577 (660)
Q Consensus       501 ~~~~~~G~l~~~GR~~d~i~~~~G~~v~~~~iE~~l~~~p~V~~~~V~~~~~~---~~~~a~v~~~~~~~~~~~~~~~~~  577 (660)
                      ++++++|.+++.||.+|+|++ +|.+|+|.+||+.|.+||.|.+|+|++.++.   +.++++++..++..        . 
T Consensus       439 ~~~~~~g~~~~~GR~dd~i~~-~G~~v~p~eiE~~l~~~~~v~~~~v~~~~~~~~g~~~~~~v~~~~~~~--------~-  508 (563)
T PRK06710        439 GYMDEDGFFYVKDRKKDMIVA-SGFNVYPREVEEVLYEHEKVQEVVTIGVPDPYRGETVKAFVVLKEGTE--------C-  508 (563)
T ss_pred             EEEcCCCcEEEeeccccEEEE-CCEEECHHHHHHHHHhCcceeeEEEEccccCCcCceeEEEEEECCCCC--------C-
Confidence            999999999999999999997 7999999999999999999999999997653   47888888776420        0 


Q ss_pred             CcHHHHhccHHHHHHHHHHHHHHHHhCCCCCceeeeEEEEecCCCCCCCCccccccccchHHHHHHHHH
Q 006111          578 GSFLELCSLVQLQNYILSELKNAAERNKLRGFEHIKGVILDPRPFDMERDLVTATLKKKRNKLLIYYQV  646 (660)
Q Consensus       578 ~~~~~~~~~~~~~~~~~~~l~~~~~~~~l~~~~~p~~i~~~~~~~~~~~~P~t~~GKv~R~~l~~~~~~  646 (660)
                             .        .++++++++ .+++.|++|..+.++      +.+|+|++||++|++|++++..
T Consensus       509 -------~--------~~~l~~~~~-~~l~~~~~P~~~~~v------~~iP~t~~GKi~r~~L~~~~~~  555 (563)
T PRK06710        509 -------S--------EEELNQFAR-KYLAAYKVPKVYEFR------DELPKTTVGKILRRVLIEEEKR  555 (563)
T ss_pred             -------C--------HHHHHHHHH-HhcccccCCcEEEEc------ccCCCCccchhhHHHHHHHHhh
Confidence                   1        123444444 679999999988886      4468999999999999887754

>TIGR02262 benz_CoA_lig benzoate-CoA ligase family

Probab=100.00  E-value=2.6e-59  Score=514.05  Aligned_cols=498  Identities=22%  Similarity=0.213  Sum_probs=400.5

Q ss_pred             CCcHHHHHHHH-HHhCCCCCceeeeccccCCCCCceEEeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEeCCchhHHHHHH
Q 006111           41 LNTAWDIFSMS-VQKYPGNRMLGWRPFVDGKFGPYVWKTYKEVYEEVLQIVSALRASGAEPGCRVGIYGANCPQWVEAME  119 (660)
Q Consensus        41 ~~ti~~~l~~~-a~~~pd~~a~~~~~~~d~~~~~~~~~Ty~ql~~~v~~lA~~L~~~Gl~~gd~V~l~~~n~~e~~~~~l  119 (660)
                      .|+..++++++ ++.+||++|++..   +      ..+||.||.++++++|.+|.+.|+++|++|+++++|+++++++++
T Consensus         3 ~~~~~~~~~~~~~~~~p~~~a~~~~---~------~~~ty~~l~~~~~~~a~~L~~~g~~~g~~v~l~~~~~~~~~~~~~   73 (508)
T TIGR02262         3 YNAAEDLLDRNVVEGRGGKTAFIDD---I------SSLSYGELEAQVRRLGAALRRLGVKREERVLLLMLDGVDFPIAFL   73 (508)
T ss_pred             chHHHHHHHHHHhcccCCceEEEeC---C------ceeeHHHHHHHHHHHHHHHHHcCCCCCCEEEEECCCCHHHHHHHH
Confidence            46778888887 6779999999754   3      479999999999999999999999999999999999999999999


Q ss_pred             HHHhCCCeEEecCCCCChhHHHHHHhcccceEEEEccchhhhhhccccccccCccEEEEecCCcHHHHHHHhhCCcceee
Q 006111          120 ACNALSLICVPLYDTLGPGAVNFILDHAEIDFVFVQDKKVKELLSPDCRSAQRLRVMVCFTSLTAEQKEMAVQTGIKPYS  199 (660)
Q Consensus       120 A~~~~G~~~vpl~~~~~~~~l~~~l~~~~~~~ii~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~  199 (660)
                      ||+++|++++|+++.++.+++..+++.++++++|++......+.+.. ...+....++..+....           ....
T Consensus        74 a~~~~G~~~v~l~~~~~~~~l~~~~~~~~~~~~i~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~-----------~~~~  141 (508)
T TIGR02262        74 GAIRAGIVPVALNTLLTADDYAYMLEDSRARVVFVSGELLPVIKAAL-GKSPHLEHRVVVGRPEA-----------GEVQ  141 (508)
T ss_pred             HHHHcCcEEeeccCCCCHHHHHHHHHhcCCeEEEEchhhHHHHHHHH-hcCCCccEEEEeCCCCc-----------cccc
Confidence            99999999999999999999999999999999999987665543322 12233444554443211           1123


Q ss_pred             HHHHHhcCccCCccCCCCCCCceEEEEecCCCCCCCceeeecchhHHHHhhh-hhhhcccccCCCCCCcEEEEecChhHH
Q 006111          200 WDEFLHLGKVNEMEILPPQPFNICTIMYTSGTSGDPKGVVLTHETIATFVSG-VDLFLDQFEDKMTVDDVYLSFLPLAHI  278 (660)
Q Consensus       200 ~~~~~~~~~~~~~~~~~~~~~~~~~i~~TSGTTG~pK~v~~th~~l~~~~~~-~~~~~~~~~~~~~~~~~~l~~~pl~~~  278 (660)
                      +.++..... .........++++++++|||||||.||+|.++|+++...+.. ....+     ++..+++++..+|++|.
T Consensus       142 ~~~~~~~~~-~~~~~~~~~~~~~a~i~~TSGTTG~PK~v~~s~~~~~~~~~~~~~~~~-----~~~~~d~~l~~~p~~~~  215 (508)
T TIGR02262       142 LAELLATES-EQFKPAATQADDPAFWLYSSGSTGMPKGVVHTHSNPYWTAELYARNTL-----GIREDDVVFSAAKLFFA  215 (508)
T ss_pred             HHHHhhcCC-CccCCCCCCCCCcEEEEeCCCCCCCCcEEEEechhHHHHHHHHhHHhc-----CCCCCCEEEEcCchHHH
Confidence            444433221 122223456789999999999999999999999999887655 23333     67889999999999999


Q ss_pred             HHHHH-HHHHhhcCcEEEEecC--ChhhHHHHhhhhcCeEEEechHHHHHHHHHHHHHHHhhchHHHHHHHHHHHHHHHH
Q 006111          279 LDRVI-EEYFFRRGASVGYYHG--DLNALRDDLMELKPTLLAGVPRVFEKIHEGIKKALEELRPLRRRIFDALYKYKLAW  355 (660)
Q Consensus       279 ~g~~~-~l~~l~~G~~~v~~~~--~~~~~~~~i~~~~~t~~~~~p~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  355 (660)
                      +++.. ++.++..|+++++.+.  ++..+++.|+++++|.++++|.++..+......                       
T Consensus       216 ~~~~~~~~~~l~~G~~~~~~~~~~~~~~~~~~i~~~~~t~~~~~P~~~~~~~~~~~~-----------------------  272 (508)
T TIGR02262       216 YGLGNALTFPMSVGATTVLMGERPTPDAVFDRLRRHQPTIFYGVPTLYAAMLADPNL-----------------------  272 (508)
T ss_pred             HHHHHHHHHHHHcCceEEEeCCCCCHHHHHHHHHHHCCcEEecchHHHHHHhcCccc-----------------------
Confidence            98865 5667889999988764  789999999999999999999988776432100                       


Q ss_pred             HhhCCCCCCcchhhhHHHHHHHHHHhCCcEeEEEEccCCCCHHHHHHHHHhcCCceeeecCCCCCCCceecccCCCcccc
Q 006111          356 MNMGYKQREASPLADLLAFRKVKARLGGRLRLVISGGAPLSTEVEEFLRVTCCAFLVQGYGLTETCGPTTVCFPDEMCMV  435 (660)
Q Consensus       356 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lr~i~~~G~~l~~~~~~~~~~~~~~~v~~~YG~tE~~~~~~~~~~~~~~~~  435 (660)
                                    .        ...++++|.++++|+++++++.+.|.+.+++++++.||+||++.++..+.... ...
T Consensus       273 --------------~--------~~~~~~l~~~~~~G~~l~~~~~~~~~~~~~~~v~~~YG~tE~~~~~~~~~~~~-~~~  329 (508)
T TIGR02262       273 --------------P--------AEDQVRLRLCTSAGEALPAEVGQRWQARFGVDIVDGIGSTEMLHIFLSNLPGD-VRY  329 (508)
T ss_pred             --------------c--------ccccccceeEEEcCCCCCHHHHHHHHHHhCCchhhCccccccCceeecCCccC-CCC
Confidence                          0        00114899999999999999999999999999999999999998766544332 234


Q ss_pred             CccCCCccCeeEEeeecCCCCCCCCCCCCCceEEEccCCcccccCCCchhhhhcccCCccccCceEEECCCCcEEEEecc
Q 006111          436 GTAGPVSVYSELRLEEVPEMGYSPLDDPPCGEVCVRGKTLFSGYYKNPDLTRESIIDGWFHTGDIGQILPNGVVKIIDRK  515 (660)
Q Consensus       436 ~~~G~~~~~~~v~ivd~~~~~~~~~~~~~~Gei~v~g~~~~~gy~~~~~~~~~~~~~g~~~TGDl~~~~~~G~l~~~GR~  515 (660)
                      +++|.|+++++++++| +++.  +++.++.|||+++|+.++.||+++++.+...|.++||+|||+++++++|.++++||.
T Consensus       330 ~~~G~~~~g~~v~i~d-~~~~--~~~~g~~Gel~i~~~~~~~gY~~~~~~~~~~~~~~~~~TGD~~~~~~~g~~~~~gR~  406 (508)
T TIGR02262       330 GTSGKPVPGYRLRLVG-DGGQ--DVAAGEPGELLISGPSSATMYWNNRAKTRDTFQGEWTRSGDKYVRNDDGSYTYAGRT  406 (508)
T ss_pred             CCcCCCCCCcEEEEEC-CCCC--CCCCCCeeEEEEecCccccccCCCHHHhHhhhhcCceeccceEEEcCCccEEEeccc
Confidence            7899999999999999 6665  445568999999999999999999999999899999999999999999999999999


Q ss_pred             CCeeEcCCCeeecchhHHHHHhcCcCcceEEEEecCCC---CeEEEEEEcChhhHHHHHHHCCCCCcHHHHhccHHHHHH
Q 006111          516 KNLIKISQGEYVALEYLENVYCVAPIIEDIWVYGDSLK---SMLVAVVVPCEEDTKKWAYSNGHAGSFLELCSLVQLQNY  592 (660)
Q Consensus       516 ~d~i~~~~G~~v~~~~iE~~l~~~p~V~~~~V~~~~~~---~~~~a~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  592 (660)
                      +|+|++ +|.+++|.+||+.|.+||+|.++++++.++.   +.+.+++++.++..                 .    ...
T Consensus       407 ~d~i~~-~G~~v~~~~ie~~l~~~~~v~~~~~~~~~~~~~~~~~~~~v~~~~~~~-----------------~----~~~  464 (508)
T TIGR02262       407 DDMLKV-SGIYVSPFEIESALIQHPAVLEAAVVGVEDEDGLIKPKAFIVLRPGQD-----------------I----DTA  464 (508)
T ss_pred             cceeee-CCEEECHHHHHHHHHhCCCeeEEEEEeccccCCCceeEEEEEeCCCCc-----------------c----ccc
Confidence            999997 7999999999999999999999999996543   37778888776430                 0    011


Q ss_pred             HHHHHHHHHHhCCCCCceeeeEEEEecCCCCCCCCccccccccchHHHHHH
Q 006111          593 ILSELKNAAERNKLRGFEHIKGVILDPRPFDMERDLVTATLKKKRNKLLIY  643 (660)
Q Consensus       593 ~~~~l~~~~~~~~l~~~~~p~~i~~~~~~~~~~~~P~t~~GKv~R~~l~~~  643 (660)
                      +.+++.++++ ..|+.|++|..+.+++      .+|+|++||++|++|+++
T Consensus       465 ~~~~i~~~~~-~~l~~~~~p~~i~~~~------~iP~t~~gKi~r~~l~~~  508 (508)
T TIGR02262       465 LETELKEHVK-DRLAPYKYPRWIVFVD------DLPKTATGKIQRFKLREG  508 (508)
T ss_pred             cHHHHHHHHH-HhcccCCCCceEEEec------CCCCCCCCcEehhhccCC
Confidence            2334555554 6799999999888874      458999999999998753

Characterized members of this protein family include benzoate-CoA ligase, 4-hydroxybenzoate-CoA ligase, 2-aminobenzoate-CoA ligase, etc. Members are related to fatty acid and acetate CoA ligases.

>PRK06178 acyl-CoA synthetase; Validated

Probab=100.00  E-value=6.5e-59  Score=517.55  Aligned_cols=515  Identities=20%  Similarity=0.245  Sum_probs=394.8

Q ss_pred             CCCCCcHHHHHHHHHHhCCCCCceeeeccccCCCCCceEEeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEeCCchhHHHH
Q 006111           38 DSDLNTAWDIFSMSVQKYPGNRMLGWRPFVDGKFGPYVWKTYKEVYEEVLQIVSALRASGAEPGCRVGIYGANCPQWVEA  117 (660)
Q Consensus        38 ~~~~~ti~~~l~~~a~~~pd~~a~~~~~~~d~~~~~~~~~Ty~ql~~~v~~lA~~L~~~Gl~~gd~V~l~~~n~~e~~~~  117 (660)
                      +..-.++.++|+++++.+|+++|+.+.   +      +.+||.||.+++.++|.+|.+.|+++||+|+++++|+++++++
T Consensus        29 ~~~~~~l~~~l~~~a~~~p~~~al~~~---~------~~~Ty~~l~~~~~~la~~L~~~g~~~g~~V~i~~~n~~~~~~~   99 (567)
T PRK06178         29 PHGERPLTEYLRAWARERPQRPAIIFY---G------HVITYAELDELSDRFAALLRQRGVGAGDRVAVFLPNCPQFHIV   99 (567)
T ss_pred             CcCcccHHHHHHHHHHHCCCceEEEEC---C------ceeeHHHHHHHHHHHHHHHHHcCCCCCCEEEEECCCCcHHHHH
Confidence            444568999999999999999999875   3      4799999999999999999999999999999999999999999


Q ss_pred             HHHHHhCCCeEEecCCCCChhHHHHHHhcccceEEEEccchhhhhhccccccccCccEEEEecCCcH--HHHHHHhh---
Q 006111          118 MEACNALSLICVPLYDTLGPGAVNFILDHAEIDFVFVQDKKVKELLSPDCRSAQRLRVMVCFTSLTA--EQKEMAVQ---  192 (660)
Q Consensus       118 ~lA~~~~G~~~vpl~~~~~~~~l~~~l~~~~~~~ii~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~--~~~~~~~~---  192 (660)
                      ++||+++|++++|++|..+..++..+++.++++++++++.....+.+....  .....++.......  ........   
T Consensus       100 ~lA~~~~G~~~v~l~p~~~~~~~~~~l~~~~~~~ii~~~~~~~~l~~~~~~--~~~~~i~~~~~~~~~~~~~~~~~~~~~  177 (567)
T PRK06178        100 FFGILKLGAVHVPVSPLFREHELSYELNDAGAEVLLALDQLAPVVEQVRAE--TSLRHVIVTSLADVLPAEPTLPLPDSL  177 (567)
T ss_pred             HHHHHHhCeEEeecCCCCCHHHHHHHHHhcCCcEEEEccchHHHHHHhhcc--CCcceEEEecccccccccccccccccc
Confidence            999999999999999999999999999999999999998876655432211  12223332221100  00000000   


Q ss_pred             --CCcceeeHHHHHhcCc--cCCccCCCCCCCceEEEEecCCCCCCCceeeecchhHHHHhhhhhhhcccccCCCCCCcE
Q 006111          193 --TGIKPYSWDEFLHLGK--VNEMEILPPQPFNICTIMYTSGTSGDPKGVVLTHETIATFVSGVDLFLDQFEDKMTVDDV  268 (660)
Q Consensus       193 --~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~i~~TSGTTG~pK~v~~th~~l~~~~~~~~~~~~~~~~~~~~~~~  268 (660)
                        .......+.++.....  ..........++++++++|||||||.||+|.+||.++...+.......    ..+..+++
T Consensus       178 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~i~~TSGTTG~PK~v~~t~~~~~~~~~~~~~~~----~~~~~~d~  253 (567)
T PRK06178        178 RAPRLAAAGAIDLLPALRACTAPVPLPPPALDALAALNYTGGTTGMPKGCEHTQRDMVYTAAAAYAVA----VVGGEDSV  253 (567)
T ss_pred             ccccccccccccHHHHhhccccccccCCCCCCCeEEEEeCCCCCCCCceEEeccHHHHHHHHHHHHHh----ccCCCCcE
Confidence              0000011222222111  111122345679999999999999999999999999887655443221    15778999


Q ss_pred             EEEecChhHHHHHHH-HHHHhhcCcEEEEecC-ChhhHHHHhhhhcCeEEEechHHHHHHHHHHHHHHHhhchHHHHHHH
Q 006111          269 YLSFLPLAHILDRVI-EEYFFRRGASVGYYHG-DLNALRDDLMELKPTLLAGVPRVFEKIHEGIKKALEELRPLRRRIFD  346 (660)
Q Consensus       269 ~l~~~pl~~~~g~~~-~l~~l~~G~~~v~~~~-~~~~~~~~i~~~~~t~~~~~p~~~~~l~~~~~~~~~~~~~~~~~~~~  346 (660)
                      ++.++|++|.+|+.. ++.+++.|+++++.+. ++..++..++++++|.++++|..+..+.....               
T Consensus       254 ~l~~~p~~~~~g~~~~~~~~l~~G~~~~l~~~~~~~~~~~~i~~~~~t~~~~~~~~~~~l~~~~~---------------  318 (567)
T PRK06178        254 FLSFLPEFWIAGENFGLLFPLFSGATLVLLARWDAVAFMAAVERYRVTRTVMLVDNAVELMDHPR---------------  318 (567)
T ss_pred             EEEecchHHHHHHHHHHHHHHHcCceEEEeCCCCHHHHHHHHHHhCCeEEeccHHHHHHHHhCCC---------------
Confidence            999999999999865 6777999999999886 89999999999999999999998877653210               


Q ss_pred             HHHHHHHHHHhhCCCCCCcchhhhHHHHHHHHHHhCCcEeEEE--EccCCCCHHHHHHHHHhcCCceee-ecCCCCCCCc
Q 006111          347 ALYKYKLAWMNMGYKQREASPLADLLAFRKVKARLGGRLRLVI--SGGAPLSTEVEEFLRVTCCAFLVQ-GYGLTETCGP  423 (660)
Q Consensus       347 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lr~i~--~~G~~l~~~~~~~~~~~~~~~v~~-~YG~tE~~~~  423 (660)
                                            ....++        ++++.+.  +.++.+++++.+.+++.+|..++. .||+||++..
T Consensus       319 ----------------------~~~~~l--------~~l~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~YG~tE~~~~  368 (567)
T PRK06178        319 ----------------------FAEYDL--------SSLRQVRVVSFVKKLNPDYRQRWRALTGSVLAEAAWGMTETHTC  368 (567)
T ss_pred             ----------------------CCCCCc--------chheeeeeccccccCCHHHHHHHHHHhCCccccccccccccccc
Confidence                                  000111        2566654  446899999999999988877775 7999999876


Q ss_pred             eecccC---CC---ccccCccCCCccCeeEEeeecCCCCCCCCCCCCCceEEEccCCcccccCCCchhhhhcccCCcccc
Q 006111          424 TTVCFP---DE---MCMVGTAGPVSVYSELRLEEVPEMGYSPLDDPPCGEVCVRGKTLFSGYYKNPDLTRESIIDGWFHT  497 (660)
Q Consensus       424 ~~~~~~---~~---~~~~~~~G~~~~~~~v~ivd~~~~~~~~~~~~~~Gei~v~g~~~~~gy~~~~~~~~~~~~~g~~~T  497 (660)
                      +.....   ..   ...++++|.|++|++++++| ++.+ .+++.|+.|||+++|++++.||+++++.+...|.+|||+|
T Consensus       369 ~~~~~~~~~~~~~~~~~~~~vG~p~~g~~v~v~d-~~~~-~~~~~g~~Gel~v~g~~v~~gY~~~~~~~~~~~~dg~~~T  446 (567)
T PRK06178        369 DTFTAGFQDDDFDLLSQPVFVGLPVPGTEFKICD-FETG-ELLPLGAEGEIVVRTPSLLKGYWNKPEATAEALRDGWLHT  446 (567)
T ss_pred             ceeccccccCccccccCCcccccccCCcEEEEEc-CCCC-CcCCCCCceEEEEECCcccccccCChhhhhhcccCCceee
Confidence            544321   11   12346799999999999998 4432 3345568999999999999999999999998889999999


Q ss_pred             CceEEECCCCcEEEEeccCCeeEcCCCeeecchhHHHHHhcCcCcceEEEEecCCC---CeEEEEEEcChhhHHHHHHHC
Q 006111          498 GDIGQILPNGVVKIIDRKKNLIKISQGEYVALEYLENVYCVAPIIEDIWVYGDSLK---SMLVAVVVPCEEDTKKWAYSN  574 (660)
Q Consensus       498 GDl~~~~~~G~l~~~GR~~d~i~~~~G~~v~~~~iE~~l~~~p~V~~~~V~~~~~~---~~~~a~v~~~~~~~~~~~~~~  574 (660)
                      ||+|+++++|+++++||.+|+|++ +|.+++|.+||+++.++|+|.+++|++.++.   +.++++|++.++..       
T Consensus       447 GDl~~~~~~g~l~i~GR~~d~i~~-~G~~i~~~eiE~~l~~~~~v~~~~v~~~~~~~~g~~~~~~v~~~~~~~-------  518 (567)
T PRK06178        447 GDIGKIDEQGFLHYLGRRKEMLKV-NGMSVFPSEVEALLGQHPAVLGSAVVGRPDPDKGQVPVAFVQLKPGAD-------  518 (567)
T ss_pred             cceEEEecCCeEEEEecccccEEE-CCEEECHHHHHHHHHhCCCeeEEEEEcCcCcccCcceEEEEEeCCCCc-------
Confidence            999999999999999999999997 8999999999999999999999999986644   47888888875420       


Q ss_pred             CCCCcHHHHhccHHHHHHHHHHHHHHHHhCCCCCceeeeEEEEecCCCCCCCCccccccccchHHHHHHHHHH
Q 006111          575 GHAGSFLELCSLVQLQNYILSELKNAAERNKLRGFEHIKGVILDPRPFDMERDLVTATLKKKRNKLLIYYQVE  647 (660)
Q Consensus       575 ~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~l~~~~~p~~i~~~~~~~~~~~~P~t~~GKv~R~~l~~~~~~~  647 (660)
                         .      .        .++|+++++ .+++.|.+|. +.++      +.+|+|++||++|++|+++++++
T Consensus       519 ---~------~--------~~~l~~~~~-~~l~~~~~p~-i~~v------~~iP~t~~GKv~r~~l~~~~~~~  566 (567)
T PRK06178        519 ---L------T--------AAALQAWCR-ENMAVYKVPE-IRIV------DALPMTATGKVRKQDLQALAEEL  566 (567)
T ss_pred             ---C------C--------HHHHHHHHH-hcCcccCCce-EEEe------ccCCCCCccceeHHHHHHHHHhh
Confidence               0      1        123444444 6789999996 6655      44689999999999999888653

>PRK10252 entF enterobactin synthase subunit F; Provisional

Probab=100.00  E-value=1.2e-59  Score=571.84  Aligned_cols=481  Identities=20%  Similarity=0.228  Sum_probs=394.8

Q ss_pred             CCcHHHHHHHHHHhCCCCCceeeeccccCCCCCceEEeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEeCCchhHHHHHHH
Q 006111           41 LNTAWDIFSMSVQKYPGNRMLGWRPFVDGKFGPYVWKTYKEVYEEVLQIVSALRASGAEPGCRVGIYGANCPQWVEAMEA  120 (660)
Q Consensus        41 ~~ti~~~l~~~a~~~pd~~a~~~~~~~d~~~~~~~~~Ty~ql~~~v~~lA~~L~~~Gl~~gd~V~l~~~n~~e~~~~~lA  120 (660)
                      ..++.++|..+++++|+++|+++.   +      +.+||+||.++++++|+.|.+.|+++||+|+++++|++++++++||
T Consensus       457 ~~~l~~~~~~~~~~~p~~~Al~~~---~------~~~Ty~eL~~~~~~la~~L~~~g~~~g~~V~l~~~~~~~~i~~~la  527 (1296)
T PRK10252        457 ETTLSALVAQQAAKTPDAPALADA---R------YQFSYREMREQVVALANLLRERGVKPGDSVAVALPRSVFLTLALHA  527 (1296)
T ss_pred             cCCHHHHHHHHHHhCCCCeEEEcC---C------CcEeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEeCCCHHHHHHHHH
Confidence            468999999999999999999875   3      4799999999999999999999999999999999999999999999


Q ss_pred             HHhCCCeEEecCCCCChhHHHHHHhcccceEEEEccchhhhhhccccccccCccEEEEecCCcHHHHHHHhhCCcceeeH
Q 006111          121 CNALSLICVPLYDTLGPGAVNFILDHAEIDFVFVQDKKVKELLSPDCRSAQRLRVMVCFTSLTAEQKEMAVQTGIKPYSW  200 (660)
Q Consensus       121 ~~~~G~~~vpl~~~~~~~~l~~~l~~~~~~~ii~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~  200 (660)
                      |+++|++++|++|.++.+++..+++.+++++++++......+...     ... .++..+.                   
T Consensus       528 ~~~~G~~~vpld~~~p~~~~~~~l~~~~~~~~i~~~~~~~~~~~~-----~~~-~~~~~~~-------------------  582 (1296)
T PRK10252        528 IVEAGAAWLPLDTGYPDDRLKMMLEDARPSLLITTADQLPRFADV-----PDL-TSLCYNA-------------------  582 (1296)
T ss_pred             HHHhCCEEEecCccCHHHHHHHHHHhCCCCEEEECcchhhhcccC-----CCc-eeeeccc-------------------
Confidence            999999999999999999999999999999999988765443211     011 1111110                   


Q ss_pred             HHHHhcCccCCccCCCCCCCceEEEEecCCCCCCCceeeecchhHHHHhhhhhhhcccccCCCCCCcEEEEecChhHHHH
Q 006111          201 DEFLHLGKVNEMEILPPQPFNICTIMYTSGTSGDPKGVVLTHETIATFVSGVDLFLDQFEDKMTVDDVYLSFLPLAHILD  280 (660)
Q Consensus       201 ~~~~~~~~~~~~~~~~~~~~~~~~i~~TSGTTG~pK~v~~th~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~pl~~~~g  280 (660)
                        ....  ....+.....++++++++|||||||.||||+++|+++.+.+......+     ++..++++++..|++|..+
T Consensus       583 --~~~~--~~~~~~~~~~~~~~a~i~~TSGSTG~PKgV~~~h~~l~~~~~~~~~~~-----~~~~~d~~l~~~~~~fd~~  653 (1296)
T PRK10252        583 --PLAP--QGAAPLQLSQPHHTAYIIFTSGSTGRPKGVMVGQTAIVNRLLWMQNHY-----PLTADDVVLQKTPCSFDVS  653 (1296)
T ss_pred             --cccc--ccCCCCCCCCCCCeEEEEECCCCCCCCCEEEeccHHHHHHHHHHHHhc-----CCCCCCEEEEeCCcchhhh
Confidence              0000  011112233678999999999999999999999999999998877777     8899999999999999988


Q ss_pred             HHHHHHHhhcCcEEEEecC----ChhhHHHHhhhhcCeEEEechHHHHHHHHHHHHHHHhhchHHHHHHHHHHHHHHHHH
Q 006111          281 RVIEEYFFRRGASVGYYHG----DLNALRDDLMELKPTLLAGVPRVFEKIHEGIKKALEELRPLRRRIFDALYKYKLAWM  356 (660)
Q Consensus       281 ~~~~l~~l~~G~~~v~~~~----~~~~~~~~i~~~~~t~~~~~p~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  356 (660)
                      +..++.++..|+++++.+.    ++..+.+.++++++|++.++|+++..+.+.......                     
T Consensus       654 ~~~~~~~l~~G~~l~~~~~~~~~~~~~~~~~i~~~~vt~~~~~Ps~l~~l~~~~~~~~~---------------------  712 (1296)
T PRK10252        654 VWEFFWPFIAGAKLVMAEPEAHRDPLAMQQFFAEYGVTTTHFVPSMLAAFVASLTPEGA---------------------  712 (1296)
T ss_pred             HHHHHHHHhCCCEEEECChhccCCHHHHHHHHHHcCCeEEEeCHHHHHHHHhhhccccc---------------------
Confidence            8888899999999999763    789999999999999999999999887653211100                     


Q ss_pred             hhCCCCCCcchhhhHHHHHHHHHHhCCcEeEEEEccCCCCHHHHHHHHHhcCCceeeecCCCCCCCceecccCCC-----
Q 006111          357 NMGYKQREASPLADLLAFRKVKARLGGRLRLVISGGAPLSTEVEEFLRVTCCAFLVQGYGLTETCGPTTVCFPDE-----  431 (660)
Q Consensus       357 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~lr~i~~~G~~l~~~~~~~~~~~~~~~v~~~YG~tE~~~~~~~~~~~~-----  431 (660)
                                            ....+++|.+++||+++++++.+.|.+.+++++++.||+||++..++......     
T Consensus       713 ----------------------~~~~~~lr~i~~gGe~l~~~~~~~~~~~~~~~l~n~YG~TE~~~~~~~~~~~~~~~~~  770 (1296)
T PRK10252        713 ----------------------RQSCASLRQVFCSGEALPADLCREWQQLTGAPLHNLYGPTEAAVDVSWYPAFGEELAA  770 (1296)
T ss_pred             ----------------------cccCCCccEEEEecCCCCHHHHHHHHhcCCCEEEeCCCcchhhheeeeeecccccccc
Confidence                                  00013899999999999999999999888999999999999998766544322     


Q ss_pred             -ccccCccCCCccCeeEEeeecCCCCCCCCCCCCCceEEEccCCcccccCCCchhhhhcc-c------CCccccCceEEE
Q 006111          432 -MCMVGTAGPVSVYSELRLEEVPEMGYSPLDDPPCGEVCVRGKTLFSGYYKNPDLTRESI-I------DGWFHTGDIGQI  503 (660)
Q Consensus       432 -~~~~~~~G~~~~~~~v~ivd~~~~~~~~~~~~~~Gei~v~g~~~~~gy~~~~~~~~~~~-~------~g~~~TGDl~~~  503 (660)
                       .....++|.|++++.++|+| +++..  ++.|+.|||+|+|++++.||+++++.+.+.| .      ++||+|||+|++
T Consensus       771 ~~~~~~~iG~p~~~~~~~i~d-~~~~~--~~~g~~Gel~i~g~~~~~GY~~~~~~t~~~f~~~~~~~~~~~y~TGDl~~~  847 (1296)
T PRK10252        771 VRGSSVPIGYPVWNTGLRILD-ARMRP--VPPGVAGDLYLTGIQLAQGYLGRPDLTASRFIADPFAPGERMYRTGDVARW  847 (1296)
T ss_pred             cCCCCCCcccccCCCEEEEEC-CCCCC--CCCCCceEEEecccccchhhCCCcccchhhcccCCCCCCCEEEecCceEEE
Confidence             22336799999999999999 66654  4556899999999999999999999999988 2      249999999999


Q ss_pred             CCCCcEEEEeccCCeeEcCCCeeecchhHHHHHhcCcCcceEEEEec-------C--CCCeEEEEEEcChhhHHHHHHHC
Q 006111          504 LPNGVVKIIDRKKNLIKISQGEYVALEYLENVYCVAPIIEDIWVYGD-------S--LKSMLVAVVVPCEEDTKKWAYSN  574 (660)
Q Consensus       504 ~~~G~l~~~GR~~d~i~~~~G~~v~~~~iE~~l~~~p~V~~~~V~~~-------~--~~~~~~a~v~~~~~~~~~~~~~~  574 (660)
                      ++||.++++||.||+||+ +|++|+|.+||++|.+||+|.+|+|+..       .  ....++++|+...+..       
T Consensus       848 ~~~G~l~~~GR~d~~ik~-~G~ri~~~eIE~~l~~~~~v~~a~v~~~~~~~~~~~~~~~~~lva~v~~~~~~~-------  919 (1296)
T PRK10252        848 LDDGAVEYLGRSDDQLKI-RGQRIELGEIDRAMQALPDVEQAVTHACVINQAAATGGDARQLVGYLVSQSGLP-------  919 (1296)
T ss_pred             cCCCcEEEecccCCeEEE-eeEEecHHHHHHHHHhCccccceEEEEEeccccccCCCCccEEEEEEEcCCCCC-------
Confidence            999999999999999998 7999999999999999999999987643       1  1137999999875420       


Q ss_pred             CCCCcHHHHhccHHHHHHHHHHHHHHHHhCCCCCceeeeEEEEecCCCCCCCCccccccccchHHHHH
Q 006111          575 GHAGSFLELCSLVQLQNYILSELKNAAERNKLRGFEHIKGVILDPRPFDMERDLVTATLKKKRNKLLI  642 (660)
Q Consensus       575 ~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~l~~~~~p~~i~~~~~~~~~~~~P~t~~GKv~R~~l~~  642 (660)
                       .        +        .++|+++++ .+||.|++|..++.+      +.+|+|++||++|++|.+
T Consensus       920 -~--------~--------~~~l~~~l~-~~Lp~~~~P~~~~~~------~~lP~t~~GKidr~~L~~  963 (1296)
T PRK10252        920 -L--------D--------TSALQAQLR-ERLPPHMVPVVLLQL------DQLPLSANGKLDRKALPL  963 (1296)
T ss_pred             -C--------C--------HHHHHHHHH-hhCchhcCCcEEEEe------cCCCCCCCcChhHHhcCC
Confidence             0        1        123444443 689999999999887      446899999999999965

>PRK08751 putative long-chain fatty acyl CoA ligase; Provisional

Probab=100.00  E-value=7e-59  Score=516.76  Aligned_cols=510  Identities=23%  Similarity=0.309  Sum_probs=393.2

Q ss_pred             CCcHHHHHHHHHHhCCCCCceeeeccccCCCCCceEEeHHHHHHHHHHHHHHHH-HcCCCCCCEEEEEeCCchhHHHHHH
Q 006111           41 LNTAWDIFSMSVQKYPGNRMLGWRPFVDGKFGPYVWKTYKEVYEEVLQIVSALR-ASGAEPGCRVGIYGANCPQWVEAME  119 (660)
Q Consensus        41 ~~ti~~~l~~~a~~~pd~~a~~~~~~~d~~~~~~~~~Ty~ql~~~v~~lA~~L~-~~Gl~~gd~V~l~~~n~~e~~~~~l  119 (660)
                      ..++.++|..+++++|+++|+++.    +     +.+||.||.+++.++|.+|. +.|+++||+|+++++|++++++++|
T Consensus        24 ~~~~~~~l~~~~~~~~~~~a~~~~----~-----~~~Ty~el~~~~~~la~~L~~~~g~~~g~~V~i~~~~~~~~~~~~l   94 (560)
T PRK08751         24 FRTVAEVFATSVAKFADRPAYHSF----G-----KTITYREADQLVEQFAAYLLGELQLKKGDRVALMMPNCLQYPIATF   94 (560)
T ss_pred             CCcHHHHHHHHHHhCCCCceEEEC----C-----ceeeHHHHHHHHHHHHHHHHHHhCCCCCCEEEEECCCCHHHHHHHH
Confidence            357999999999999999999865    3     58999999999999999997 6799999999999999999999999


Q ss_pred             HHHhCCCeEEecCCCCChhHHHHHHhcccceEEEEccchhhhhhccccccccCccEEEEecCCc--H-HHHH--------
Q 006111          120 ACNALSLICVPLYDTLGPGAVNFILDHAEIDFVFVQDKKVKELLSPDCRSAQRLRVMVCFTSLT--A-EQKE--------  188 (660)
Q Consensus       120 A~~~~G~~~vpl~~~~~~~~l~~~l~~~~~~~ii~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~--~-~~~~--------  188 (660)
                      ||+++|++++|++|.++.+++..+++.++++++++++.....+...... . ....++..+...  . ....        
T Consensus        95 A~~~~G~~~v~l~p~~~~~~~~~~l~~~~~~~vi~~~~~~~~~~~~~~~-~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~  172 (560)
T PRK08751         95 GVLRAGLTVVNVNPLYTPRELKHQLIDSGASVLVVIDNFGTTVQQVIAD-T-PVKQVITTGLGDMLGFPKAALVNFVVKY  172 (560)
T ss_pred             HHHHhCeEEeccCccCCHHHHHHHHHhcCCeEEEEcchhHHHHHHHhhC-C-CccEEEEechhhhcccccchhhhhhhhh
Confidence            9999999999999999999999999999999999988765544332211 1 122222211000  0 0000        


Q ss_pred             -H---HhhCCcceeeHHHHHhcCccCCccCCCCCCCceEEEEecCCCCCCCceeeecchhHHHHhhhhhhhcccccCCCC
Q 006111          189 -M---AVQTGIKPYSWDEFLHLGKVNEMEILPPQPFNICTIMYTSGTSGDPKGVVLTHETIATFVSGVDLFLDQFEDKMT  264 (660)
Q Consensus       189 -~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~TSGTTG~pK~v~~th~~l~~~~~~~~~~~~~~~~~~~  264 (660)
                       .   ..........+.+................++++++++|||||||.||+|.++|.++...+......+.... .+.
T Consensus       173 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~TSGTTG~PK~v~~s~~~l~~~~~~~~~~~~~~~-~~~  251 (560)
T PRK08751        173 VKKLVPEYRINGAIRFREALALGRKHSMPTLQIEPDDIAFLQYTGGTTGVAKGAMLTHRNLVANMQQAHQWLAGTG-KLE  251 (560)
T ss_pred             hhccccccCCCccccHHHHHhccCCCCCCCCCCCcccEEEEEcCCCCCCCCCEEEEccHHHHHHHHHHHHhhcccc-ccC
Confidence             0   00000111234444433322222233456789999999999999999999999999887766544431110 123


Q ss_pred             C-CcEEEEecChhHHHHHHH-HHHHhhcCcEEEEecC--ChhhHHHHhhhhcCeEEEechHHHHHHHHHHHHHHHhhchH
Q 006111          265 V-DDVYLSFLPLAHILDRVI-EEYFFRRGASVGYYHG--DLNALRDDLMELKPTLLAGVPRVFEKIHEGIKKALEELRPL  340 (660)
Q Consensus       265 ~-~~~~l~~~pl~~~~g~~~-~l~~l~~G~~~v~~~~--~~~~~~~~i~~~~~t~~~~~p~~~~~l~~~~~~~~~~~~~~  340 (660)
                      . .+++++.+|++|.+++.. .+.++..|+++++...  ++..+++.++++++|++.++|.++..+.+...         
T Consensus       252 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~i~~~~~t~~~~~p~~~~~l~~~~~---------  322 (560)
T PRK08751        252 EGCEVVITALPLYHIFALTANGLVFMKIGGCNHLISNPRDMPGFVKELKKTRFTAFTGVNTLFNGLLNTPG---------  322 (560)
T ss_pred             CCCceEEEecChHHHHHHHHhhhhHhhccceEEEecCcCCHHHHHHHHHhcceeEecChHHHHHHHHcCcC---------
Confidence            3 467788899999998865 4556777777766553  88999999999999999999999988764210         


Q ss_pred             HHHHHHHHHHHHHHHHhhCCCCCCcchhhhHHHHHHHHHHhCCcEeEEEEccCCCCHHHHHHHHHhcCCceeeecCCCCC
Q 006111          341 RRRIFDALYKYKLAWMNMGYKQREASPLADLLAFRKVKARLGGRLRLVISGGAPLSTEVEEFLRVTCCAFLVQGYGLTET  420 (660)
Q Consensus       341 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lr~i~~~G~~l~~~~~~~~~~~~~~~v~~~YG~tE~  420 (660)
                                                  .+..++        +++|.+++||+++++.+.+.|++.+|+++++.||+||+
T Consensus       323 ----------------------------~~~~~l--------~~lr~v~~gG~~~~~~~~~~~~~~~~~~~~~~YG~tE~  366 (560)
T PRK08751        323 ----------------------------FDQIDF--------SSLKMTLGGGMAVQRSVAERWKQVTGLTLVEAYGLTET  366 (560)
T ss_pred             ----------------------------cCCcch--------hhheeeeeCCCCCCHHHHHHHHHHhCCeEEEeeccccC
Confidence                                        111122        38999999999999999999999889999999999999


Q ss_pred             CCceecccCCCccccCccCCCccCeeEEeeecCCCCCCCCCCCCCceEEEccCCcccccCCCchhhhhcc-cCCccccCc
Q 006111          421 CGPTTVCFPDEMCMVGTAGPVSVYSELRLEEVPEMGYSPLDDPPCGEVCVRGKTLFSGYYKNPDLTRESI-IDGWFHTGD  499 (660)
Q Consensus       421 ~~~~~~~~~~~~~~~~~~G~~~~~~~v~ivd~~~~~~~~~~~~~~Gei~v~g~~~~~gy~~~~~~~~~~~-~~g~~~TGD  499 (660)
                      +..++.+........+++|.|+++++++++| +++..  ++.++.|||+++|+.++.||++++..+.+.| .+|||+|||
T Consensus       367 ~~~~~~~~~~~~~~~~~vG~~~~~~~v~i~d-~~~~~--~~~g~~Gel~v~~~~~~~gy~~~~~~~~~~~~~~g~~~TGD  443 (560)
T PRK08751        367 SPAACINPLTLKEYNGSIGLPIPSTDACIKD-DAGTV--LAIGEIGELCIKGPQVMKGYWKRPEETAKVMDADGWLHTGD  443 (560)
T ss_pred             CCceecccccccccCCCcCccCCCceEEEEC-CCCCC--CCCCCceEEEEecCccchhhcCChhhhhhccccCCCccccc
Confidence            9877665543334457899999999999999 66654  4456799999999999999999999998888 689999999


Q ss_pred             eEEECCCCcEEEEeccCCeeEcCCCeeecchhHHHHHhcCcCcceEEEEecCCC---CeEEEEEEcChhhHHHHHHHCCC
Q 006111          500 IGQILPNGVVKIIDRKKNLIKISQGEYVALEYLENVYCVAPIIEDIWVYGDSLK---SMLVAVVVPCEEDTKKWAYSNGH  576 (660)
Q Consensus       500 l~~~~~~G~l~~~GR~~d~i~~~~G~~v~~~~iE~~l~~~p~V~~~~V~~~~~~---~~~~a~v~~~~~~~~~~~~~~~~  576 (660)
                      +|+++++|.+++.||.+|+|++ +|.+|+|.+||+.|..||+|.+|+|++.++.   +.++++++.....          
T Consensus       444 ~~~~~~~g~l~i~GR~~d~i~~-~G~~v~p~eiE~~l~~~~~v~~~~v~~~~~~~~ge~~~~~v~~~~~~----------  512 (560)
T PRK08751        444 IARMDEQGFVYIVDRKKDMILV-SGFNVYPNEIEDVIAMMPGVLEVAAVGVPDEKSGEIVKVVIVKKDPA----------  512 (560)
T ss_pred             eEEEcCCceEEEEeechhheeE-CCEEEcHHHHHHHHHhCcCeeeeEEEecCCCCCCceEEEEEEcCCCC----------
Confidence            9999999999999999999997 7999999999999999999999999997654   3666666654321          


Q ss_pred             CCcHHHHhccHHHHHHHHHHHHHHHHhCCCCCceeeeEEEEecCCCCCCCCccccccccchHHHHHH
Q 006111          577 AGSFLELCSLVQLQNYILSELKNAAERNKLRGFEHIKGVILDPRPFDMERDLVTATLKKKRNKLLIY  643 (660)
Q Consensus       577 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~~l~~~~~p~~i~~~~~~~~~~~~P~t~~GKv~R~~l~~~  643 (660)
                       .      .        .++++++++ ..++.|++|..+.++      +.+|+|++||++|++|++.
T Consensus       513 -~------~--------~~~l~~~~~-~~l~~~~~P~~v~~v------~~lP~t~~gKv~r~~L~~~  557 (560)
T PRK08751        513 -L------T--------AEDVKAHAR-ANLTGYKQPRIIEFR------KELPKTNVGKILRRELRDA  557 (560)
T ss_pred             -C------C--------HHHHHHHHH-HhhhhccCCeEEEEh------hhCCCCccccccHHHHHHh
Confidence             0      1        112333333 568899999999987      4468999999999999865

>PRK12467 peptide synthase; Provisional

Probab=100.00  E-value=7.1e-60  Score=611.65  Aligned_cols=501  Identities=21%  Similarity=0.264  Sum_probs=406.5

Q ss_pred             CCCCCCCCCCCcHHHHHHHHHHhCCCCCceeeeccccCCCCCceEEeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEeCCc
Q 006111           32 NGFPSVDSDLNTAWDIFSMSVQKYPGNRMLGWRPFVDGKFGPYVWKTYKEVYEEVLQIVSALRASGAEPGCRVGIYGANC  111 (660)
Q Consensus        32 ~~~~~~~~~~~ti~~~l~~~a~~~pd~~a~~~~~~~d~~~~~~~~~Ty~ql~~~v~~lA~~L~~~Gl~~gd~V~l~~~n~  111 (660)
                      +..+..+....+++++|+.+++++||++|+++.   +      +++||+||.++++++|+.|.+.|+++|++|+++++|+
T Consensus       502 ~~~~~~~~~~~~~~~~~~~~a~~~pd~~Al~~~---~------~~lTY~eL~~~a~~lA~~L~~~Gv~~g~~V~i~~~~s  572 (3956)
T PRK12467        502 WNAPATEYAPDCVHQLIEAQARQHPERPALVFG---E------QVLSYAELNRQANRLAHVLIAAGVGPDVLVGIAVERS  572 (3956)
T ss_pred             cCCCCCCCCCCCHHHHHHHHHHHCCCCeEEEeC---C------ceEcHHHHHHHHHHHHHHHHHcCCCCCCEEEEEeCCC
Confidence            333333335678999999999999999999876   3      4899999999999999999999999999999999999


Q ss_pred             hhHHHHHHHHHhCCCeEEecCCCCChhHHHHHHhcccceEEEEccchhhhhhccccccccCccEEEEecCCcHHHHHHHh
Q 006111          112 PQWVEAMEACNALSLICVPLYDTLGPGAVNFILDHAEIDFVFVQDKKVKELLSPDCRSAQRLRVMVCFTSLTAEQKEMAV  191 (660)
Q Consensus       112 ~e~~~~~lA~~~~G~~~vpl~~~~~~~~l~~~l~~~~~~~ii~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~  191 (660)
                      +++++++|||+++|++++|++|.++.+++..+++++++++++++......+..     .... .++.++...        
T Consensus       573 ~~~vv~~lail~aG~~~vpld~~~p~~rl~~il~~~~~~~vl~~~~~~~~~~~-----~~~~-~~~~~~~~~--------  638 (3956)
T PRK12467        573 IEMVVGLLAVLKAGGAYVPLDPEYPQDRLAYMLDDSGVRLLLTQSHLLAQLPV-----PAGL-RSLCLDEPA--------  638 (3956)
T ss_pred             HHHHHHHHHHHHhCcEEeccCCCChHHHHHHHHHhcCCCEEEechhhhhhccc-----ccCc-cEEEecccc--------
Confidence            99999999999999999999999999999999999999999998854432210     0111 122222110        


Q ss_pred             hCCcceeeHHHHHhcCccCCccCCCCCCCceEEEEecCCCCCCCceeeecchhHHHHhhhhhhhcccccCCCCCCcEEEE
Q 006111          192 QTGIKPYSWDEFLHLGKVNEMEILPPQPFNICTIMYTSGTSGDPKGVVLTHETIATFVSGVDLFLDQFEDKMTVDDVYLS  271 (660)
Q Consensus       192 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~TSGTTG~pK~v~~th~~l~~~~~~~~~~~~~~~~~~~~~~~~l~  271 (660)
                                +..... ....+.....++++++|+|||||||.||||+++|+++.+.+......+     ++..+++++.
T Consensus       639 ----------~~~~~~-~~~~~~~~~~~~~~a~iiyTSGSTG~PKgV~~th~~l~~~~~~~~~~~-----~~~~~d~~l~  702 (3956)
T PRK12467        639 ----------DLLCGY-SGHNPEVALDPDNLAYVIYTSGSTGQPKGVAISHGALANYVCVIAERL-----QLAADDSMLM  702 (3956)
T ss_pred             ----------cccccc-CCCCCCCCCCCCCeEEEEECCCCCCCcCEEEEecHHHHHHHHHHHHhc-----CCCCCCEEEE
Confidence                      000000 111222345689999999999999999999999999999998887777     7889999999


Q ss_pred             ecChhHHHHHHHHHHHhhcCcEEEEecC----ChhhHHHHhhhhcCeEEEechHHHHHHHHHHHHHHHhhchHHHHHHHH
Q 006111          272 FLPLAHILDRVIEEYFFRRGASVGYYHG----DLNALRDDLMELKPTLLAGVPRVFEKIHEGIKKALEELRPLRRRIFDA  347 (660)
Q Consensus       272 ~~pl~~~~g~~~~l~~l~~G~~~v~~~~----~~~~~~~~i~~~~~t~~~~~p~~~~~l~~~~~~~~~~~~~~~~~~~~~  347 (660)
                      +.|++|..+...++.+++.|+++++.+.    ++..+++.|+++++|++.++|+++..+.+.....              
T Consensus       703 ~~~~~fd~~~~~~~~~L~~G~~lv~~~~~~~~~~~~l~~~i~~~~vt~~~~~Ps~~~~l~~~~~~~--------------  768 (3956)
T PRK12467        703 VSTFAFDLGVTELFGALASGATLHLLPPDCARDAEAFAALMADQGVTVLKIVPSHLQALLQASRVA--------------  768 (3956)
T ss_pred             ecCccHhHHHHHHHHHHhCCCEEEEcCccccCCHHHHHHHHHHcCCeEEEcCHHHHHHHHhhhccc--------------
Confidence            9999999998889999999999999874    7899999999999999999999999886532110              


Q ss_pred             HHHHHHHHHhhCCCCCCcchhhhHHHHHHHHHHhCCcEeEEEEccCCCCHHHHHHHHHhc-CCceeeecCCCCCCCceec
Q 006111          348 LYKYKLAWMNMGYKQREASPLADLLAFRKVKARLGGRLRLVISGGAPLSTEVEEFLRVTC-CAFLVQGYGLTETCGPTTV  426 (660)
Q Consensus       348 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lr~i~~~G~~l~~~~~~~~~~~~-~~~v~~~YG~tE~~~~~~~  426 (660)
                                                       ...++|.+++||+++++++.+.|.+.+ +++++|.||+||++..++.
T Consensus       769 ---------------------------------~~~~lr~i~~gGe~l~~~~~~~~~~~~~~~~l~n~YG~TE~~~~~~~  815 (3956)
T PRK12467        769 ---------------------------------LPRPQRALVCGGEALQVDLLARVRALGPGARLINHYGPTETTVGVST  815 (3956)
T ss_pred             ---------------------------------cCCcccEEEEEeecCCHHHHHHHHHhCCCCEEEeCcCCChhhhheee
Confidence                                             013679999999999999999998876 6899999999999987766


Q ss_pred             ccCCCcc---ccCccCCCccCeeEEeeecCCCCCCCCCCCCCceEEEccCCcccccCCCchhhhhccc-C-------Ccc
Q 006111          427 CFPDEMC---MVGTAGPVSVYSELRLEEVPEMGYSPLDDPPCGEVCVRGKTLFSGYYKNPDLTRESII-D-------GWF  495 (660)
Q Consensus       427 ~~~~~~~---~~~~~G~~~~~~~v~ivd~~~~~~~~~~~~~~Gei~v~g~~~~~gy~~~~~~~~~~~~-~-------g~~  495 (660)
                      .......   ...++|+|+++++++|+| +++..  ++.|+.|||+|+|++++.||+++++.+.+.|. +       +||
T Consensus       816 ~~~~~~~~~~~~~~iG~p~~~~~~~i~d-~~~~~--vp~G~~GEL~i~G~~v~~GYl~~p~~T~~~F~~~p~~~~g~r~y  892 (3956)
T PRK12467        816 YELSDEERDFGNVPIGQPLANLGLYILD-HYLNP--VPVGVVGELYIGGAGLARGYHRRPALTAERFVPDPFGADGGRLY  892 (3956)
T ss_pred             EecccccccCCCCcccCCcCCCEEEEEC-CCCCC--CCCCCceEEEecccccchhhcCCccccHhhCcCCCCCCCCceeE
Confidence            5432211   125799999999999999 66654  45568999999999999999999999999882 2       399


Q ss_pred             ccCceEEECCCCcEEEEeccCCeeEcCCCeeecchhHHHHHhcCcCcceEEEEecCC--CCeEEEEEEcChhhHHHHHHH
Q 006111          496 HTGDIGQILPNGVVKIIDRKKNLIKISQGEYVALEYLENVYCVAPIIEDIWVYGDSL--KSMLVAVVVPCEEDTKKWAYS  573 (660)
Q Consensus       496 ~TGDl~~~~~~G~l~~~GR~~d~i~~~~G~~v~~~~iE~~l~~~p~V~~~~V~~~~~--~~~~~a~v~~~~~~~~~~~~~  573 (660)
                      +|||+|++++||.++++||.||+||+ +|++|+|.+||+.|.+||+|.+|+|++.++  .+.++|++++.....      
T Consensus       893 rTGDl~~~~~dG~l~~~GR~d~~vki-~G~rI~~~eIE~~L~~~p~V~~a~v~~~~~~~~~~lva~vv~~~~~~------  965 (3956)
T PRK12467        893 RTGDLARYRADGVIEYLGRMDHQVKI-RGFRIELGEIEARLLAQPGVREAVVLAQPGDAGLQLVAYLVPAAVAD------  965 (3956)
T ss_pred             ecCceeEEcCCCcEEEeccccCeEEE-CCEecCHHHHHHHHHhCCCcceEEEEEEcCCCCcEEEEEEEeccccc------
Confidence            99999999999999999999999998 799999999999999999999999998543  348999998653210      


Q ss_pred             CCCCCcHHHHhccHHHHHHHHHHHHHHHHhCCCCCceeeeEEEEecCCCCCCCCccccccccchHHHHHHHHHHH
Q 006111          574 NGHAGSFLELCSLVQLQNYILSELKNAAERNKLRGFEHIKGVILDPRPFDMERDLVTATLKKKRNKLLIYYQVEI  648 (660)
Q Consensus       574 ~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~l~~~~~p~~i~~~~~~~~~~~~P~t~~GKv~R~~l~~~~~~~i  648 (660)
                       ..            ......++|+++++ ..||.|++|..+++++      .+|+|++||++|++|.+.+....
T Consensus       966 -~~------------~~~~~~~~l~~~l~-~~Lp~y~vP~~~~~l~------~lP~t~~GKidR~~L~~~~~~~~ 1020 (3956)
T PRK12467        966 -GA------------EHQATRDELKAQLR-QVLPDYMVPAHLLLLD------SLPLTPNGKLDRKALPKPDASAV 1020 (3956)
T ss_pred             -cc------------ccccCHHHHHHHHH-hhCchhcCCceEeeec------ccCCCCCCCcCHhhcCCcccccc
Confidence             00            00112234555554 7899999999999874      46899999999999987654433

>PRK12316 peptide synthase; Provisional

Probab=100.00  E-value=7e-60  Score=621.17  Aligned_cols=486  Identities=20%  Similarity=0.239  Sum_probs=400.5

Q ss_pred             CCCCCcHHHHHHHHHHhCCCCCceeeeccccCCCCCceEEeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEeCCchhHHHH
Q 006111           38 DSDLNTAWDIFSMSVQKYPGNRMLGWRPFVDGKFGPYVWKTYKEVYEEVLQIVSALRASGAEPGCRVGIYGANCPQWVEA  117 (660)
Q Consensus        38 ~~~~~ti~~~l~~~a~~~pd~~a~~~~~~~d~~~~~~~~~Ty~ql~~~v~~lA~~L~~~Gl~~gd~V~l~~~n~~e~~~~  117 (660)
                      .+...++++.|..+++++|+++|+++.   +      +++||+||.++++++|..|.+.|+++|++|+++++|+++++++
T Consensus      1999 ~~~~~~~~~~~~~~a~~~p~~~A~~~~---~------~~lTy~eL~~~a~~lA~~L~~~gv~~g~~V~l~~~~s~~~~~~ 2069 (5163)
T PRK12316       1999 YPRGPGVHQRIAEQAARAPEAIAVVFG---D------QHLSYAELDSRANRLAHRLRARGVGPEVRVAIAAERSFELVVA 2069 (5163)
T ss_pred             CCCCCCHHHHHHHHHHhCCCCeEEEcC---C------CeEcHHHHHHHHHHHHHHHHHcCCCCCCEEEEEeCCCHHHHHH
Confidence            344568999999999999999999876   4      4799999999999999999999999999999999999999999


Q ss_pred             HHHHHhCCCeEEecCCCCChhHHHHHHhcccceEEEEccchhhhhhccccccccCccEEEEecCCcHHHHHHHhhCCcce
Q 006111          118 MEACNALSLICVPLYDTLGPGAVNFILDHAEIDFVFVQDKKVKELLSPDCRSAQRLRVMVCFTSLTAEQKEMAVQTGIKP  197 (660)
Q Consensus       118 ~lA~~~~G~~~vpl~~~~~~~~l~~~l~~~~~~~ii~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~  197 (660)
                      +|||+++|++++|++|.++.+++..+++++++++++++......+...     ... ..+.++..               
T Consensus      2070 ~lAil~aGa~~vpld~~~p~~rl~~il~~~~~~~vl~~~~~~~~~~~~-----~~~-~~~~~~~~--------------- 2128 (5163)
T PRK12316       2070 LLAVLKAGGAYVPLDPNYPAERLAYMLEDSGAALLLTQRHLLERLPLP-----AGV-ARLPLDRD--------------- 2128 (5163)
T ss_pred             HHHHHhhceEEeecCCCCCHHHHHHHHHhcCCCEEEeChhhhhhcccc-----ccc-ceEeccch---------------
Confidence            999999999999999999999999999999999999988765433110     011 11111110               


Q ss_pred             eeHHHHHhcCccCCccCCCCCCCceEEEEecCCCCCCCceeeecchhHHHHhhhhhhhcccccCCCCCCcEEEEecChhH
Q 006111          198 YSWDEFLHLGKVNEMEILPPQPFNICTIMYTSGTSGDPKGVVLTHETIATFVSGVDLFLDQFEDKMTVDDVYLSFLPLAH  277 (660)
Q Consensus       198 ~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~TSGTTG~pK~v~~th~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~pl~~  277 (660)
                         ..+...  ....+.....++++++|+|||||||.||||+++|+++.+.+......+     +++.+++++.+.|++|
T Consensus      2129 ---~~~~~~--~~~~~~~~~~~~~~a~ii~TSGSTG~PKgV~~~h~~l~~~~~~~~~~~-----~~~~~d~~l~~~~~~f 2198 (5163)
T PRK12316       2129 ---AEWADY--PDTAPAVQLAGENLAYVIYTSGSTGLPKGVAVSHGALVAHCQAAGERY-----ELSPADCELQFMSFSF 2198 (5163)
T ss_pred             ---hhhhcc--CccCCCCCCCCCCeEEEEeCccCCCCCCEeEEccHHHHHHHHHHHHhc-----CCCCcceEEEecCchH
Confidence               000000  111223345789999999999999999999999999999998887777     8899999999999999


Q ss_pred             HHHHHHHHHHhhcCcEEEEecC---ChhhHHHHhhhhcCeEEEechHHHHHHHHHHHHHHHhhchHHHHHHHHHHHHHHH
Q 006111          278 ILDRVIEEYFFRRGASVGYYHG---DLNALRDDLMELKPTLLAGVPRVFEKIHEGIKKALEELRPLRRRIFDALYKYKLA  354 (660)
Q Consensus       278 ~~g~~~~l~~l~~G~~~v~~~~---~~~~~~~~i~~~~~t~~~~~p~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~  354 (660)
                      ..++..++.+++.|+++++.+.   ++..+++.|+++++|+++++|++++.+.+.....                     
T Consensus      2199 d~~~~~~~~~L~~G~~~~~~~~~~~~~~~~~~~i~~~~vt~~~~~P~~~~~l~~~~~~~--------------------- 2257 (5163)
T PRK12316       2199 DGAHEQWFHPLLNGARVLIRDDELWDPEQLYDEMERHGVTILDFPPVYLQQLAEHAERD--------------------- 2257 (5163)
T ss_pred             HHHHHHHHHHHhCCCEEEeCCcccCCHHHHHHHHHHcCCeEEEcChHHHHHHHhhhhcc---------------------
Confidence            9888888999999999977653   7889999999999999999999999886532110                     


Q ss_pred             HHhhCCCCCCcchhhhHHHHHHHHHHhCCcEeEEEEccCCCCHHHHHHHHHhc-CCceeeecCCCCCCCceecccCCCc-
Q 006111          355 WMNMGYKQREASPLADLLAFRKVKARLGGRLRLVISGGAPLSTEVEEFLRVTC-CAFLVQGYGLTETCGPTTVCFPDEM-  432 (660)
Q Consensus       355 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lr~i~~~G~~l~~~~~~~~~~~~-~~~v~~~YG~tE~~~~~~~~~~~~~-  432 (660)
                                               ...++||.+++||+++++++.+.|.+.+ +..++++||+||++..++....... 
T Consensus      2258 -------------------------~~~~~lr~~~~gGe~l~~~~~~~~~~~~~~~~l~n~YG~TE~~~~~~~~~~~~~~ 2312 (5163)
T PRK12316       2258 -------------------------GRPPAVRVYCFGGEAVPAASLRLAWEALRPVYLFNGYGPTEAVVTPLLWKCRPQD 2312 (5163)
T ss_pred             -------------------------cCCcceeEEEEecccCCHHHHHHHHHhCCCcEEEECccchhheeeeeeeeccccc
Confidence                                     0013899999999999999999998766 6789999999999877654332221 


Q ss_pred             c---ccCccCCCccCeeEEeeecCCCCCCCCCCCCCceEEEccCCcccccCCCchhhhhccc--------CCccccCceE
Q 006111          433 C---MVGTAGPVSVYSELRLEEVPEMGYSPLDDPPCGEVCVRGKTLFSGYYKNPDLTRESII--------DGWFHTGDIG  501 (660)
Q Consensus       433 ~---~~~~~G~~~~~~~v~ivd~~~~~~~~~~~~~~Gei~v~g~~~~~gy~~~~~~~~~~~~--------~g~~~TGDl~  501 (660)
                      .   ...++|+|+++++++|+| +++.  +++.|+.|||+|+|++++.||+++++.|.+.|.        ++||+|||+|
T Consensus      2313 ~~~~~~~~iG~p~~~~~~~i~d-~~~~--~vp~g~~GEl~i~G~~v~~GY~~~p~~T~~~f~~~~~~~~~~~~yrTGDl~ 2389 (5163)
T PRK12316       2313 PCGAAYVPIGRALGNRRAYILD-ADLN--LLAPGMAGELYLGGEGLARGYLNRPGLTAERFVPDPFSASGERLYRTGDLA 2389 (5163)
T ss_pred             ccCCCcCCcccccCCCEEEEEC-CCCC--CCCCCCeeEEEecchhhcccccCChhhhhhhccCCCCCCCCCeeEecccEE
Confidence            1   125799999999999999 6665  445668999999999999999999999999982        2599999999


Q ss_pred             EECCCCcEEEEeccCCeeEcCCCeeecchhHHHHHhcCcCcceEEEEecCCC--CeEEEEEEcChhhHHHHHHHCCCCCc
Q 006111          502 QILPNGVVKIIDRKKNLIKISQGEYVALEYLENVYCVAPIIEDIWVYGDSLK--SMLVAVVVPCEEDTKKWAYSNGHAGS  579 (660)
Q Consensus       502 ~~~~~G~l~~~GR~~d~i~~~~G~~v~~~~iE~~l~~~p~V~~~~V~~~~~~--~~~~a~v~~~~~~~~~~~~~~~~~~~  579 (660)
                      ++++||.|+++||+||+||+ +|++|+|.|||++|.+||+|.+|+|++.++.  +.++|+|++.++..            
T Consensus      2390 ~~~~dG~l~~~GR~d~~iki-~G~rie~~eIE~~l~~~~~v~~a~v~~~~~~~~~~l~a~v~~~~~~~------------ 2456 (5163)
T PRK12316       2390 RYRADGVVEYLGRIDHQVKI-RGFRIELGEIEARLQAHPAVREAVVVAQDGASGKQLVAYVVPDDAAE------------ 2456 (5163)
T ss_pred             EEcCCCcEEEecCCCCeEEE-cCccCChHHHHHHHhhCcccceEEEEEEecCCCeEEEEEEEecCCCc------------
Confidence            99999999999999999998 7999999999999999999999999986533  58999999876420            


Q ss_pred             HHHHhccHHHHHHHHHHHHHHHHhCCCCCceeeeEEEEecCCCCCCCCccccccccchHHHHHHH
Q 006111          580 FLELCSLVQLQNYILSELKNAAERNKLRGFEHIKGVILDPRPFDMERDLVTATLKKKRNKLLIYY  644 (660)
Q Consensus       580 ~~~~~~~~~~~~~~~~~l~~~~~~~~l~~~~~p~~i~~~~~~~~~~~~P~t~~GKv~R~~l~~~~  644 (660)
                                  ...++|+++++ ..||.|++|..++++      +.+|+|++||++|++|.+..
T Consensus      2457 ------------~~~~~l~~~l~-~~Lp~~~vP~~~~~l------~~lP~t~~GKidR~~L~~~~ 2502 (5163)
T PRK12316       2457 ------------DLLAELRAWLA-ARLPAYMVPAHWVVL------ERLPLNPNGKLDRKALPKPD 2502 (5163)
T ss_pred             ------------cCHHHHHHHHH-hhCchhcCcceEeee------cccCCCCCCccCHhhcCCCc
Confidence                        01234444554 789999999999886      45699999999999997654

>PRK13383 acyl-CoA synthetase; Provisional

Probab=100.00  E-value=9e-59  Score=510.41  Aligned_cols=477  Identities=21%  Similarity=0.226  Sum_probs=380.8

Q ss_pred             CCCcHHHHHHHHHHhCCCCCceeeeccccCCCCCceEEeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEeCCchhHHHHHH
Q 006111           40 DLNTAWDIFSMSVQKYPGNRMLGWRPFVDGKFGPYVWKTYKEVYEEVLQIVSALRASGAEPGCRVGIYGANCPQWVEAME  119 (660)
Q Consensus        40 ~~~ti~~~l~~~a~~~pd~~a~~~~~~~d~~~~~~~~~Ty~ql~~~v~~lA~~L~~~Gl~~gd~V~l~~~n~~e~~~~~l  119 (660)
                      ...++.+.|...++++|+++|+.+.   +      +.+||.||.++++++|++|.+.|+++||+|+++++|++++++++|
T Consensus        33 ~~~~~~~~~~~~a~~~p~~~a~~~~---~------~~lTy~el~~~~~~la~~L~~~gi~~g~~V~i~~~~~~~~~~~~l  103 (516)
T PRK13383         33 GGTNPYTLLAVTAARWPGRTAIIDD---D------GALSYRELQRATESLARRLTRDGVAPGRAVGVMCRNGRGFVTAVF  103 (516)
T ss_pred             cCCcHHHHHHHHHHHCCCCcEEEeC---C------CcEeHHHHHHHHHHHHHHHHhcCCCCCCEEEEECCCCHHHHHHHH
Confidence            3477899999999999999999864   3      379999999999999999999999999999999999999999999


Q ss_pred             HHHhCCCeEEecCCCCChhHHHHHHhcccceEEEEccchhhhhhccccccccCccEEEEecCCcHHHHHHHhhCCcceee
Q 006111          120 ACNALSLICVPLYDTLGPGAVNFILDHAEIDFVFVQDKKVKELLSPDCRSAQRLRVMVCFTSLTAEQKEMAVQTGIKPYS  199 (660)
Q Consensus       120 A~~~~G~~~vpl~~~~~~~~l~~~l~~~~~~~ii~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~  199 (660)
                      ||+++|++++|+++.++.+++..+++.++++.+++++.....+....       ..++.++....               
T Consensus       104 a~~~~G~v~vpl~~~~~~~~l~~~l~~~~~~~ii~~~~~~~~~~~~~-------~~~~~~~~~~~---------------  161 (516)
T PRK13383        104 AVGLLGADVVPISTEFRSDALAAALRAHHISTVVADNEFAERIAGAD-------DAVAVIDPATA---------------  161 (516)
T ss_pred             HHHHhCeEEEEcCccCCHHHHHHHHhcCCCCEEEEchhHHHHHHhhh-------cceEEeccchh---------------
Confidence            99999999999999999999999999999999999887655432211       11222221100               


Q ss_pred             HHHHHhcCccCCccCCCCCCCceEEEEecCCCCCCCceeeecchhHHHHh--hhhhhhcccccCCCCCCcEEEEecChhH
Q 006111          200 WDEFLHLGKVNEMEILPPQPFNICTIMYTSGTSGDPKGVVLTHETIATFV--SGVDLFLDQFEDKMTVDDVYLSFLPLAH  277 (660)
Q Consensus       200 ~~~~~~~~~~~~~~~~~~~~~~~~~i~~TSGTTG~pK~v~~th~~l~~~~--~~~~~~~~~~~~~~~~~~~~l~~~pl~~  277 (660)
                        ..  .    .....+...++.++++|||||||.||+|.++|.......  ......+     ++..+++++..+|++|
T Consensus       162 --~~--~----~~~~~p~~~~~~~~il~TSGTTG~PK~v~~s~~~~~~~~~~~~~~~~~-----~~~~~d~~~~~~pl~h  228 (516)
T PRK13383        162 --GA--E----ESGGRPAVAAPGRIVLLTSGTTGKPKGVPRAPQLRSAVGVWVTILDRT-----RLRTGSRISVAMPMFH  228 (516)
T ss_pred             --hh--h----cCCCCCCCCCCCcEEEECCCCCCCCCeeeecchhhhhhhhHHhHHhhh-----ccCCCCeEEEecCCcc
Confidence              00  0    000112234567899999999999999999997432111  1111222     6778999999999999


Q ss_pred             HHHHHHHHHHhhcCcEEEEecC-ChhhHHHHhhhhcCeEEEechHHHHHHHHHHHHHHHhhchHHHHHHHHHHHHHHHHH
Q 006111          278 ILDRVIEEYFFRRGASVGYYHG-DLNALRDDLMELKPTLLAGVPRVFEKIHEGIKKALEELRPLRRRIFDALYKYKLAWM  356 (660)
Q Consensus       278 ~~g~~~~l~~l~~G~~~v~~~~-~~~~~~~~i~~~~~t~~~~~p~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  356 (660)
                      .+|+...+.++..|+++++... ++..+++.++++++|.++++|.++..+.+.......                     
T Consensus       229 ~~g~~~~~~~l~~G~~~~~~~~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~---------------------  287 (516)
T PRK13383        229 GLGLGMLMLTIALGGTVLTHRHFDAEAALAQASLHRADAFTAVPVVLARILELPPRVRA---------------------  287 (516)
T ss_pred             hhhHHHHHHHHhcCCEEEECCCCCHHHHHHHHHHhCCcEEEecHHHHHHHHhccccccc---------------------
Confidence            9999877888999999987765 899999999999999999999999888643211000                     


Q ss_pred             hhCCCCCCcchhhhHHHHHHHHHHhCCcEeEEEEccCCCCHHHHHHHHHhcCCceeeecCCCCCCCceecccCCCccccC
Q 006111          357 NMGYKQREASPLADLLAFRKVKARLGGRLRLVISGGAPLSTEVEEFLRVTCCAFLVQGYGLTETCGPTTVCFPDEMCMVG  436 (660)
Q Consensus       357 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~lr~i~~~G~~l~~~~~~~~~~~~~~~v~~~YG~tE~~~~~~~~~~~~~~~~~  436 (660)
                                    .        ...+++|.+++||+++++++.+.|.+.++..+++.||+||++..+...........+
T Consensus       288 --------------~--------~~~~~lr~i~~gG~~l~~~~~~~~~~~~g~~v~~~YG~tE~~~~~~~~~~~~~~~~~  345 (516)
T PRK13383        288 --------------R--------NPLPQLRVVMSSGDRLDPTLGQRFMDTYGDILYNGYGSTEVGIGALATPADLRDAPE  345 (516)
T ss_pred             --------------c--------CCCCceEEEEECCCCCCHHHHHHHHHHcCchhhhcccccccccceeccccccccCCC
Confidence                          0        001489999999999999999999999999999999999998766555433334457


Q ss_pred             ccCCCccCeeEEeeecCCCCCCCCCCCCCceEEEccCCcccccCCCchhhhhcccCCccccCceEEECCCCcEEEEeccC
Q 006111          437 TAGPVSVYSELRLEEVPEMGYSPLDDPPCGEVCVRGKTLFSGYYKNPDLTRESIIDGWFHTGDIGQILPNGVVKIIDRKK  516 (660)
Q Consensus       437 ~~G~~~~~~~v~ivd~~~~~~~~~~~~~~Gei~v~g~~~~~gy~~~~~~~~~~~~~g~~~TGDl~~~~~~G~l~~~GR~~  516 (660)
                      ++|.|+++++++|+| +++.  +++.++.|||+++|+.++.||++++.   ..+.+|||+|||+|++|++|++++.||.+
T Consensus       346 ~~G~~~~~~~~~i~d-~~~~--~~~~g~~Gel~v~g~~~~~~Y~~~~~---~~~~~g~~~TGDl~~~d~~G~l~i~GR~~  419 (516)
T PRK13383        346 TVGKPVAGCPVRILD-RNNR--PVGPRVTGRIFVGGELAGTRYTDGGG---KAVVDGMTSTGDMGYLDNAGRLFIVGRED  419 (516)
T ss_pred             cccCCCCCcEEEEEC-CCCC--CCCCCCceEEEEecCcccccccCCch---hheecCceecceeEEEcCCccEEEecccc
Confidence            899999999999999 6654  44556899999999999999998753   33468999999999999999999999999


Q ss_pred             CeeEcCCCeeecchhHHHHHhcCcCcceEEEEecCCC---CeEEEEEEcChhhHHHHHHHCCCCCcHHHHhccHHHHHHH
Q 006111          517 NLIKISQGEYVALEYLENVYCVAPIIEDIWVYGDSLK---SMLVAVVVPCEEDTKKWAYSNGHAGSFLELCSLVQLQNYI  593 (660)
Q Consensus       517 d~i~~~~G~~v~~~~iE~~l~~~p~V~~~~V~~~~~~---~~~~a~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  593 (660)
                      |+|++ +|.+|+|.+||++|.+||.|.+++|++.++.   +.+.++|++.++..        .        .        
T Consensus       420 ~~i~~-~G~~v~~~eiE~~l~~~~~v~~~~vv~~~~~~~g~~~~~~v~~~~~~~--------~--------~--------  474 (516)
T PRK13383        420 DMIIS-GGENVYPRAVENALAAHPAVADNAVIGVPDERFGHRLAAFVVLHPGSG--------V--------D--------  474 (516)
T ss_pred             ceEEE-CCEEECHHHHHHHHHhCCCeeEEEEEeccccccCceEEEEEEECCCCC--------C--------C--------
Confidence            99997 8999999999999999999999999996643   47888888775420        0        0        


Q ss_pred             HHHHHHHHHhCCCCCceeeeEEEEecCCCCCCCCccccccccchHHHH
Q 006111          594 LSELKNAAERNKLRGFEHIKGVILDPRPFDMERDLVTATLKKKRNKLL  641 (660)
Q Consensus       594 ~~~l~~~~~~~~l~~~~~p~~i~~~~~~~~~~~~P~t~~GKv~R~~l~  641 (660)
                      .++++++++ .+++.|++|..+.+++      .+|+|++||++|++|.
T Consensus       475 ~~~l~~~~~-~~l~~~~~p~~i~~v~------~iP~t~~gKi~r~~L~  515 (516)
T PRK13383        475 AAQLRDYLK-DRVSRFEQPRDINIVS------SIPRNPTGKVLRKELP  515 (516)
T ss_pred             HHHHHHHHH-HhcccCCCCcEEEEeC------CCCCCCCCcCcHHHhC
Confidence            123444444 5688999999999874      4689999999999873

>PRK07445 O-succinylbenzoic acid--CoA ligase; Reviewed

Probab=100.00  E-value=3.6e-59  Score=502.03  Aligned_cols=426  Identities=20%  Similarity=0.224  Sum_probs=346.0

Q ss_pred             EEeHHHHHHHHHHHHHHHHHcCC-CCCCEEEEEeCCchhHHHHHHHHHhCCCeEEecCCCCChhHHHHHHhcccceEEEE
Q 006111           76 WKTYKEVYEEVLQIVSALRASGA-EPGCRVGIYGANCPQWVEAMEACNALSLICVPLYDTLGPGAVNFILDHAEIDFVFV  154 (660)
Q Consensus        76 ~~Ty~ql~~~v~~lA~~L~~~Gl-~~gd~V~l~~~n~~e~~~~~lA~~~~G~~~vpl~~~~~~~~l~~~l~~~~~~~ii~  154 (660)
                      -+.|+||.+++.++|++|.+.|+ ++|++|+++++|+++++++++||+++|++++|++|.++.+++.++++.++++++++
T Consensus        19 ~~~~~el~~~~~~~a~~L~~~g~~~~~~~V~i~~~n~~e~~~~~~A~~~~G~~~vpl~~~~~~~~~~~~~~~~~~~~~i~   98 (452)
T PRK07445         19 GYNSQRFYQLAQQLYLQLQQLATPRTPPKILLAESDPLQFLAAFLAAVAAGCPVFLANPHWGQQEWQQVLNLVQPDQIWG   98 (452)
T ss_pred             ecChHHHHHHHHHHHHHHHHhcCCCCCCeEEEecCCCHHHHHHHHHHHHhCcEEEeeccCCCHHHHHHHHHhcCCCEEEe
Confidence            37899999999999999999988 57999999999999999999999999999999999999999999999999999998


Q ss_pred             ccchhhhhhccccccccCccEEEEecCCcHHHHHHHhhCCcceeeHHHHHhcCccCCccCCCCCCCceEEEEecCCCCCC
Q 006111          155 QDKKVKELLSPDCRSAQRLRVMVCFTSLTAEQKEMAVQTGIKPYSWDEFLHLGKVNEMEILPPQPFNICTIMYTSGTSGD  234 (660)
Q Consensus       155 ~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~TSGTTG~  234 (660)
                      +.......                ....                          .  .......++++++++|||||||.
T Consensus        99 ~~~~~~~~----------------~~~~--------------------------~--~~~~~~~~~~~~~i~~TSGTTG~  134 (452)
T PRK07445         99 LDQLKLSH----------------PPPL--------------------------P--SQGILPNLETGWIMIPTGGSSGQ  134 (452)
T ss_pred             cCcccccc----------------CCCC--------------------------C--ccccCCCCCCcEEEEeCCCCCCC
Confidence            76532100                0000                          0  00112356899999999999999


Q ss_pred             CceeeecchhHHHHhhhhhhhcccccCCCCCCcEEEEecChhHHHHHHHHHHHhhcCcEEEEecC-ChhhHHHHhhhhcC
Q 006111          235 PKGVVLTHETIATFVSGVDLFLDQFEDKMTVDDVYLSFLPLAHILDRVIEEYFFRRGASVGYYHG-DLNALRDDLMELKP  313 (660)
Q Consensus       235 pK~v~~th~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~pl~~~~g~~~~l~~l~~G~~~v~~~~-~~~~~~~~i~~~~~  313 (660)
                      ||+|++||+++...+......+     ++.. ++.++++|++|.+|+...+.+++.|+++++.+. ..........++++
T Consensus       135 PKgV~~t~~~l~~~~~~~~~~~-----~~~~-~~~~~~~Pl~h~~g~~~~~~~l~~G~t~v~~~~~~~~~~~~~~~~~~~  208 (452)
T PRK07445        135 IRFAIHTWETLTASVQGFQRYF-----QLQQ-VNSFCVLPLYHVSGLMQFMRSFLTGGKLVILPYKRLKSGQELPPNPSD  208 (452)
T ss_pred             CcEEEechHHHHHHHHHHHHHh-----cCCC-CceEeccCchhhhhHHHHHHHHHcCCeEEEcChHhccchhhhhhhcCc
Confidence            9999999999988877666555     4444 467889999999999878888999999998864 23333344457889


Q ss_pred             eEEEechHHHHHHHHHHHHHHHhhchHHHHHHHHHHHHHHHHHhhCCCCCCcchhhhHHHHHHHHHHhCCcEeEEEEccC
Q 006111          314 TLLAGVPRVFEKIHEGIKKALEELRPLRRRIFDALYKYKLAWMNMGYKQREASPLADLLAFRKVKARLGGRLRLVISGGA  393 (660)
Q Consensus       314 t~~~~~p~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lr~i~~~G~  393 (660)
                      |+++++|++++.+.+....                                        .+        +++|.+++||+
T Consensus       209 t~~~~vP~~l~~l~~~~~~----------------------------------------~l--------~~l~~i~~gG~  240 (452)
T PRK07445        209 FFLSLVPTQLQRLLQLRPQ----------------------------------------WL--------AQFRTILLGGA  240 (452)
T ss_pred             eEEEehHHHHHHHHhhChh----------------------------------------hh--------hcceEEEECCc
Confidence            9999999999987641000                                        01        38999999999


Q ss_pred             CCCHHHHHHHHHhcCCceeeecCCCCCCCceecccCCC-ccccCccCCCccCeeEEeeecCCCCCCCCCCCCCceEEEcc
Q 006111          394 PLSTEVEEFLRVTCCAFLVQGYGLTETCGPTTVCFPDE-MCMVGTAGPVSVYSELRLEEVPEMGYSPLDDPPCGEVCVRG  472 (660)
Q Consensus       394 ~l~~~~~~~~~~~~~~~v~~~YG~tE~~~~~~~~~~~~-~~~~~~~G~~~~~~~v~ivd~~~~~~~~~~~~~~Gei~v~g  472 (660)
                      ++++++.+.+.+ +++++++.||+||++..++...... ....+++|+|+++++++|++           ++.|||+|+|
T Consensus       241 ~l~~~~~~~~~~-~~~~l~~~YG~TE~~~~~~~~~~~~~~~~~~~~G~~~p~~~v~i~~-----------g~~Gel~v~g  308 (452)
T PRK07445        241 PAWPSLLEQARQ-LQLRLAPTYGMTETASQIATLKPDDFLAGNNSSGQVLPHAQITIPA-----------NQTGNITIQA  308 (452)
T ss_pred             cCCHHHHHHHHh-cCCeEecCcchhhhcccccccCchhhccCCCcCCccCCCCeEEEcC-----------CCcceEEEeC
Confidence            999999988876 4899999999999986654433322 22347899999999999872           2479999999


Q ss_pred             CCcccccCCCchhhhhcccCCccccCceEEECCCCcEEEEeccCCeeEcCCCeeecchhHHHHHhcCcCcceEEEEecCC
Q 006111          473 KTLFSGYYKNPDLTRESIIDGWFHTGDIGQILPNGVVKIIDRKKNLIKISQGEYVALEYLENVYCVAPIIEDIWVYGDSL  552 (660)
Q Consensus       473 ~~~~~gy~~~~~~~~~~~~~g~~~TGDl~~~~~~G~l~~~GR~~d~i~~~~G~~v~~~~iE~~l~~~p~V~~~~V~~~~~  552 (660)
                      |.++.||+++...     .+|||+|||+|++|+||++++.||.||+|++ +|++|+|.+||++|.+||+|.+|+|++.++
T Consensus       309 ~~~~~gY~~~~~~-----~~g~~~TGDl~~~d~dG~l~~~GR~dd~I~~-~G~~V~p~eIE~~l~~~p~V~~a~V~g~~~  382 (452)
T PRK07445        309 QSLALGYYPQILD-----SQGIFETDDLGYLDAQGYLHILGRNSQKIIT-GGENVYPAEVEAAILATGLVQDVCVLGLPD  382 (452)
T ss_pred             CccchhhcCCccC-----CCCEEECCCEEEEcCCCCEEEEeecCCEEEE-CCEEECHHHHHHHHHhCCCcceEEEEeccC
Confidence            9999999986421     4799999999999999999999999999996 899999999999999999999999999876


Q ss_pred             C---CeEEEEEEcChhhHHHHHHHCCCCCcHHHHhccHHHHHHHHHHHHHHHHhCCCCCceeeeEEEEecCCCCCCCCcc
Q 006111          553 K---SMLVAVVVPCEEDTKKWAYSNGHAGSFLELCSLVQLQNYILSELKNAAERNKLRGFEHIKGVILDPRPFDMERDLV  629 (660)
Q Consensus       553 ~---~~~~a~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~l~~~~~p~~i~~~~~~~~~~~~P~  629 (660)
                      +   +.++|+++..++.                  .+       .++++++++ .+|+.|++|+.+++++      .+|+
T Consensus       383 ~~~g~~~~a~vv~~~~~------------------~~-------~~~l~~~~~-~~L~~~~~P~~i~~v~------~lP~  430 (452)
T PRK07445        383 PHWGEVVTAIYVPKDPS------------------IS-------LEELKTAIK-DQLSPFKQPKHWIPVP------QLPR  430 (452)
T ss_pred             cCCCcEEEEEEEeCCCC------------------CC-------HHHHHHHHH-HhCCcccCCeEEEEec------CCCC
Confidence            5   4788888876532                  00       123444444 6799999999999874      4589


Q ss_pred             ccccccchHHHHHHHHHHHH
Q 006111          630 TATLKKKRNKLLIYYQVEID  649 (660)
Q Consensus       630 t~~GKv~R~~l~~~~~~~i~  649 (660)
                      |++||++|++|+++|.++|+
T Consensus       431 t~~GKi~r~~L~~~~~~~~~  450 (452)
T PRK07445        431 NPQGKINRQQLQQIAVQRLG  450 (452)
T ss_pred             CCCcccCHHHHHHHHHHhhC
Confidence            99999999999999998874

>PRK07787 acyl-CoA synthetase; Validated

Probab=100.00  E-value=6e-59  Score=505.85  Aligned_cols=453  Identities=26%  Similarity=0.281  Sum_probs=370.0

Q ss_pred             HHhCCCCCceeeeccccCCCCCceEEeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEeCCchhHHHHHHHHHhCCCeEEec
Q 006111           52 VQKYPGNRMLGWRPFVDGKFGPYVWKTYKEVYEEVLQIVSALRASGAEPGCRVGIYGANCPQWVEAMEACNALSLICVPL  131 (660)
Q Consensus        52 a~~~pd~~a~~~~~~~d~~~~~~~~~Ty~ql~~~v~~lA~~L~~~Gl~~gd~V~l~~~n~~e~~~~~lA~~~~G~~~vpl  131 (660)
                      +...++++|++..   +      +++||+||.++++++|..|.     ++|+|+++++|++++++++|||+++|++++|+
T Consensus        10 ~~~~~~~~a~~~~---~------~~~Ty~el~~~~~~~a~~L~-----~~~~V~l~~~~~~~~~~~~la~~~~G~~~v~l   75 (471)
T PRK07787         10 AAAADIADAVRIG---G------RVLSRSDLAGAATAVAERVA-----GARRVAVLATPTLATVLAVVGALIAGVPVVPV   75 (471)
T ss_pred             hcccCCceEEEeC---C------cEEEHHHHHHHHHHHHHHhc-----cCCEEEEECCCCHHHHHHHHHHHhcCcEEeec
Confidence            4567889998765   3      58999999999999999996     47999999999999999999999999999999


Q ss_pred             CCCCChhHHHHHHhcccceEEEEccchhhhhhccccccccCccEEEEecCCcHHHHHHHhhCCcceeeHHHHHhcCccCC
Q 006111          132 YDTLGPGAVNFILDHAEIDFVFVQDKKVKELLSPDCRSAQRLRVMVCFTSLTAEQKEMAVQTGIKPYSWDEFLHLGKVNE  211 (660)
Q Consensus       132 ~~~~~~~~l~~~l~~~~~~~ii~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  211 (660)
                      ++..+.+++..+++.+++++++++.....          ..+........               ..++           
T Consensus        76 ~~~~~~~~l~~~l~~~~~~~il~~~~~~~----------~~~~~~~~~~~---------------~~~~-----------  119 (471)
T PRK07787         76 PPDSGVAERRHILADSGAQAWLGPAPDDP----------AGLPHVPVRLH---------------ARSW-----------  119 (471)
T ss_pred             CCCCChHHHHHHHHhcCCCEEEecCCccc----------ccccceeeecc---------------cccc-----------
Confidence            99999999999999999999999763110          00000000000               0000           


Q ss_pred             ccCCCCCCCceEEEEecCCCCCCCceeeecchhHHHHhhhhhhhcccccCCCCCCcEEEEecChhHHHHHHH-HHHHhhc
Q 006111          212 MEILPPQPFNICTIMYTSGTSGDPKGVVLTHETIATFVSGVDLFLDQFEDKMTVDDVYLSFLPLAHILDRVI-EEYFFRR  290 (660)
Q Consensus       212 ~~~~~~~~~~~~~i~~TSGTTG~pK~v~~th~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~pl~~~~g~~~-~l~~l~~  290 (660)
                      .......++++++++|||||||.||+|.++|+++...+..+...+     ++..++++++.+|++|..|+.. ++.+++.
T Consensus       120 ~~~~~~~~~~~a~i~~TSGTTG~PK~v~~t~~~l~~~~~~~~~~~-----~~~~~~~~~~~~p~~~~~g~~~~~~~~l~~  194 (471)
T PRK07787        120 HRYPEPDPDAPALIVYTSGTTGPPKGVVLSRRAIAADLDALAEAW-----QWTADDVLVHGLPLFHVHGLVLGVLGPLRI  194 (471)
T ss_pred             ccCCCCCCCceEEEEECCCCCCCCCEEEEeHHHHHHHHHHHHHhc-----CCCccceeEeccCCeeechhHHHHHHHHhc
Confidence            011124578999999999999999999999999999887776666     6788999999999999999886 6777999


Q ss_pred             CcEEEEecC-ChhhHHHHhhhhcCeEEEechHHHHHHHHHHHHHHHhhchHHHHHHHHHHHHHHHHHhhCCCCCCcchhh
Q 006111          291 GASVGYYHG-DLNALRDDLMELKPTLLAGVPRVFEKIHEGIKKALEELRPLRRRIFDALYKYKLAWMNMGYKQREASPLA  369 (660)
Q Consensus       291 G~~~v~~~~-~~~~~~~~i~~~~~t~~~~~p~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  369 (660)
                      |+++++.+. ++..+++.|+ +++|+++++|.++..+.+.....                                    
T Consensus       195 G~~~~~~~~~~~~~~~~~i~-~~~t~~~~~P~~~~~l~~~~~~~------------------------------------  237 (471)
T PRK07787        195 GNRFVHTGRPTPEAYAQALS-EGGTLYFGVPTVWSRIAADPEAA------------------------------------  237 (471)
T ss_pred             CCEEEecCCCCHHHHHHHHh-hCceEEEcchHHHHHHHhCcccc------------------------------------
Confidence            999988765 8999999999 99999999999998876421000                                    


Q ss_pred             hHHHHHHHHHHhCCcEeEEEEccCCCCHHHHHHHHHhcCCceeeecCCCCCCCceecccCCCccccCccCCCccCeeEEe
Q 006111          370 DLLAFRKVKARLGGRLRLVISGGAPLSTEVEEFLRVTCCAFLVQGYGLTETCGPTTVCFPDEMCMVGTAGPVSVYSELRL  449 (660)
Q Consensus       370 ~~~~~~~~~~~~~~~lr~i~~~G~~l~~~~~~~~~~~~~~~v~~~YG~tE~~~~~~~~~~~~~~~~~~~G~~~~~~~v~i  449 (660)
                                ...+++|.+++||+++++.+.+.|.+.++.++++.||+||++...+..... ...++++|.|+++++++|
T Consensus       238 ----------~~l~~l~~~~~gg~~~~~~~~~~~~~~~~~~~~~~YG~tE~~~~~~~~~~~-~~~~~~vG~~~~g~~~~i  306 (471)
T PRK07787        238 ----------RALRGARLLVSGSAALPVPVFDRLAALTGHRPVERYGMTETLITLSTRADG-ERRPGWVGLPLAGVETRL  306 (471)
T ss_pred             ----------ccccceeEEEECCCCCCHHHHHHHHHHcCCCeecccCccccCcceecCCCC-cccCCcccccCCCcEEEE
Confidence                      001389999999999999999999998899999999999998765544332 333478999999999999


Q ss_pred             eecCCCCCCCCCCCCCceEEEccCCcccccCCCchhhhhcc-cCCccccCceEEECCCCcEEEEecc-CCeeEcCCCeee
Q 006111          450 EEVPEMGYSPLDDPPCGEVCVRGKTLFSGYYKNPDLTRESI-IDGWFHTGDIGQILPNGVVKIIDRK-KNLIKISQGEYV  527 (660)
Q Consensus       450 vd~~~~~~~~~~~~~~Gei~v~g~~~~~gy~~~~~~~~~~~-~~g~~~TGDl~~~~~~G~l~~~GR~-~d~i~~~~G~~v  527 (660)
                      +| +++..++.+.++.|||+++|+.++.||+++++.+.+.| .+|||+|||+|++++||.++++||. +|+++. +|.+|
T Consensus       307 ~d-~~~~~~~~~~~~~Gei~v~g~~~~~gy~~~~~~t~~~~~~~~~~~TGDlg~~~~dg~l~~~GR~~d~~i~~-~G~~v  384 (471)
T PRK07787        307 VD-EDGGPVPHDGETVGELQVRGPTLFDGYLNRPDATAAAFTADGWFRTGDVAVVDPDGMHRIVGRESTDLIKS-GGYRI  384 (471)
T ss_pred             EC-CCCCCCCCCCCCceEEEEECcccchhhcCChhhchhcccCCCceecCceEEEcCCCCEEEeCCCCceeEee-CCEEE
Confidence            99 66665543333479999999999999999999999988 5899999999999999999999996 899996 89999


Q ss_pred             cchhHHHHHhcCcCcceEEEEecCCC---CeEEEEEEcChhhHHHHHHHCCCCCcHHHHhccHHHHHHHHHHHHHHHHhC
Q 006111          528 ALEYLENVYCVAPIIEDIWVYGDSLK---SMLVAVVVPCEEDTKKWAYSNGHAGSFLELCSLVQLQNYILSELKNAAERN  604 (660)
Q Consensus       528 ~~~~iE~~l~~~p~V~~~~V~~~~~~---~~~~a~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~  604 (660)
                      +|.+||++|.++|.|.+++|++.++.   +.++++|++..+.                  .        .+++.++++ +
T Consensus       385 ~~~eIE~~l~~~~~v~~~~v~~~~~~~~~~~~~a~v~~~~~~------------------~--------~~~l~~~l~-~  437 (471)
T PRK07787        385 GAGEIETALLGHPGVREAAVVGVPDDDLGQRIVAYVVGADDV------------------A--------ADELIDFVA-Q  437 (471)
T ss_pred             CHHHHHHHHHhCCCcceEEEEcccccccCeEEEEEEEeCCCC------------------C--------HHHHHHHHH-h
Confidence            99999999999999999999997754   4788888874321                  1        122334443 6


Q ss_pred             CCCCceeeeEEEEecCCCCCCCCccccccccchHHHHH
Q 006111          605 KLRGFEHIKGVILDPRPFDMERDLVTATLKKKRNKLLI  642 (660)
Q Consensus       605 ~l~~~~~p~~i~~~~~~~~~~~~P~t~~GKv~R~~l~~  642 (660)
                      .|++|++|..|+++      +.+|+|++||++|++|++
T Consensus       438 ~l~~~~~P~~i~~~------~~iP~~~~GKi~r~~L~~  469 (471)
T PRK07787        438 QLSVHKRPREVRFV------DALPRNAMGKVLKKQLLS  469 (471)
T ss_pred             hcccccCCcEEEEe------ccCCCCCCccccHHHhcc
Confidence            78999999998887      446899999999999975

>PRK04813 D-alanine--poly(phosphoribitol) ligase subunit 1; Provisional

Probab=100.00  E-value=1.5e-58  Score=507.96  Aligned_cols=484  Identities=18%  Similarity=0.194  Sum_probs=393.1

Q ss_pred             CCcHHHHHHHHHHhCCCCCceeeeccccCCCCCceEEeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEeCCchhHHHHHHH
Q 006111           41 LNTAWDIFSMSVQKYPGNRMLGWRPFVDGKFGPYVWKTYKEVYEEVLQIVSALRASGAEPGCRVGIYGANCPQWVEAMEA  120 (660)
Q Consensus        41 ~~ti~~~l~~~a~~~pd~~a~~~~~~~d~~~~~~~~~Ty~ql~~~v~~lA~~L~~~Gl~~gd~V~l~~~n~~e~~~~~lA  120 (660)
                      |+++.++|++++..+|+++++...   +      +++||.||.+++.++|..|.+.|+.+||+|+++++|+.++++++||
T Consensus         1 ~~~~~~~l~~~a~~~p~~~~~~~~---~------~~~t~~~l~~~~~~~a~~l~~~g~~~~~~v~~~~~~~~~~~~~~~a   71 (503)
T PRK04813          1 IMDIIETIEEFAQTQPDFPAYDYL---G------EKLTYGQLKEDSDALAAFIDSLKLPDKSPIIVFGHMSPEMLATFLG   71 (503)
T ss_pred             CchHHHHHHHHHHhCCCceEEEeC---C------cEEeHHHHHHHHHHHHHHHHHhCCCCCCEEEEEcCCCHHHHHHHHH
Confidence            467899999999999999998764   3      4799999999999999999999999999999999999999999999


Q ss_pred             HHhCCCeEEecCCCCChhHHHHHHhcccceEEEEccchhhhhhccccccccCccEEEEecCCcHHHHHHHhhCCcceeeH
Q 006111          121 CNALSLICVPLYDTLGPGAVNFILDHAEIDFVFVQDKKVKELLSPDCRSAQRLRVMVCFTSLTAEQKEMAVQTGIKPYSW  200 (660)
Q Consensus       121 ~~~~G~~~vpl~~~~~~~~l~~~l~~~~~~~ii~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~  200 (660)
                      |+++|++++|+++.++.+++..+++.+++++++++.......        ... ..                     ..+
T Consensus        72 ~~~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--------~~~-~~---------------------~~~  121 (503)
T PRK04813         72 AVKAGHAYIPVDVSSPAERIEMIIEVAKPSLIIATEELPLEI--------LGI-PV---------------------ITL  121 (503)
T ss_pred             HHHcCCEEecCCCCChHHHHHHHHHhcCCCEEEecccccccc--------cCC-cE---------------------Eeh
Confidence            999999999999999999999999999999999987641100        011 11                     111


Q ss_pred             HHHHhcC--ccCCccCCCCCCCceEEEEecCCCCCCCceeeecchhHHHHhhhhhhhcccccCCCCCCcEEEEecChhHH
Q 006111          201 DEFLHLG--KVNEMEILPPQPFNICTIMYTSGTSGDPKGVVLTHETIATFVSGVDLFLDQFEDKMTVDDVYLSFLPLAHI  278 (660)
Q Consensus       201 ~~~~~~~--~~~~~~~~~~~~~~~~~i~~TSGTTG~pK~v~~th~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~pl~~~  278 (660)
                      .++....  ...........++++++++|||||||.||+|.++|+++...+......+     .+..+++++...|++|.
T Consensus       122 ~~~~~~~~~~~~~~~~~~~~~~~~~~i~~TSGTTG~PK~v~~t~~~~~~~~~~~~~~~-----~~~~~~~~~~~~p~~~~  196 (503)
T PRK04813        122 DELKDIFATGNPYDFDHAVKGDDNYYIIFTSGTTGKPKGVQISHDNLVSFTNWMLEDF-----ALPEGPQFLNQAPYSFD  196 (503)
T ss_pred             HHhhhhhhccccccccccCCCCCcEEEEECCCCCCCCcEEEeehHHHHHHHHHHHHHc-----CCCcCceeeecCCcchh
Confidence            1111110  0111112345678899999999999999999999999998877766555     78889999999999999


Q ss_pred             HHHHHHHHHhhcCcEEEEecC----ChhhHHHHhhhhcCeEEEechHHHHHHHHHHHHHHHhhchHHHHHHHHHHHHHHH
Q 006111          279 LDRVIEEYFFRRGASVGYYHG----DLNALRDDLMELKPTLLAGVPRVFEKIHEGIKKALEELRPLRRRIFDALYKYKLA  354 (660)
Q Consensus       279 ~g~~~~l~~l~~G~~~v~~~~----~~~~~~~~i~~~~~t~~~~~p~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~  354 (660)
                      .++...+.++..|+++++.+.    ++..+++.+.++++|++.++|.+++.+.......                     
T Consensus       197 ~~~~~~~~~l~~g~~~v~~~~~~~~~~~~~~~~~~~~~~t~~~~~p~~~~~~~~~~~~~---------------------  255 (503)
T PRK04813        197 LSVMDLYPTLASGGTLVALPKDMTANFKQLFETLPQLPINVWVSTPSFADMCLLDPSFN---------------------  255 (503)
T ss_pred             HhHHHHHHHHhcCCEEEEcChhhhcCHHHHHHHHHHcCCeEEEeChHHHHHHHHhhccC---------------------
Confidence            988778888999999988874    7899999999999999999999998764321100                     


Q ss_pred             HHhhCCCCCCcchhhhHHHHHHHHHHhCCcEeEEEEccCCCCHHHHHHHHHhc-CCceeeecCCCCCCCceecccCCC--
Q 006111          355 WMNMGYKQREASPLADLLAFRKVKARLGGRLRLVISGGAPLSTEVEEFLRVTC-CAFLVQGYGLTETCGPTTVCFPDE--  431 (660)
Q Consensus       355 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lr~i~~~G~~l~~~~~~~~~~~~-~~~v~~~YG~tE~~~~~~~~~~~~--  431 (660)
                                              ....+++|.++++|+++++.+.+.+.+.+ +..+++.||+||++..++......  
T Consensus       256 ------------------------~~~~~~l~~i~~~G~~l~~~~~~~~~~~~~~~~~~~~yG~tE~~~~~~~~~~~~~~  311 (503)
T PRK04813        256 ------------------------EEHLPNLTHFLFCGEELPHKTAKKLLERFPSATIYNTYGPTEATVAVTSIEITDEM  311 (503)
T ss_pred             ------------------------cccCCCceEEEEecCcCCHHHHHHHHHHCCCceEEeCcccchheeEEEEEEecccc
Confidence                                    00114899999999999999999999988 788999999999987655433211  


Q ss_pred             --ccccCccCCCccCeeEEeeecCCCCCCCCCCCCCceEEEccCCcccccCCCchhhhhccc--CC--ccccCceEEECC
Q 006111          432 --MCMVGTAGPVSVYSELRLEEVPEMGYSPLDDPPCGEVCVRGKTLFSGYYKNPDLTRESII--DG--WFHTGDIGQILP  505 (660)
Q Consensus       432 --~~~~~~~G~~~~~~~v~ivd~~~~~~~~~~~~~~Gei~v~g~~~~~gy~~~~~~~~~~~~--~g--~~~TGDl~~~~~  505 (660)
                        .....++|.+.++++++|++ +++...  +.++.|||+++|+.++.||++++..+...|.  +|  ||+|||+|++ .
T Consensus       312 ~~~~~~~~~g~~~~~~~~~i~d-~~~~~~--~~g~~Gel~v~~~~~~~gy~~~~~~~~~~~~~~~g~~~~~tGD~~~~-~  387 (503)
T PRK04813        312 LDQYKRLPIGYAKPDSPLLIID-EEGTKL--PDGEQGEIVISGPSVSKGYLNNPEKTAEAFFTFDGQPAYHTGDAGYL-E  387 (503)
T ss_pred             cccCCCCcccccCCCCEEEEEC-CCCCCC--CCCCceEEEEeccccccccCCChhHhHHhhccCCCceeEECCceEEe-e
Confidence              23335799999999999999 666544  4567999999999999999999999988872  44  9999999999 8


Q ss_pred             CCcEEEEeccCCeeEcCCCeeecchhHHHHHhcCcCcceEEEEecCCC---CeEEEEEEcChhhHHHHHHHCCCCCcHHH
Q 006111          506 NGVVKIIDRKKNLIKISQGEYVALEYLENVYCVAPIIEDIWVYGDSLK---SMLVAVVVPCEEDTKKWAYSNGHAGSFLE  582 (660)
Q Consensus       506 ~G~l~~~GR~~d~i~~~~G~~v~~~~iE~~l~~~p~V~~~~V~~~~~~---~~~~a~v~~~~~~~~~~~~~~~~~~~~~~  582 (660)
                      +|++++.||.+|+|++ +|++++|.+||+.+.++|+|.+++|++.++.   +.+++++++.++..               
T Consensus       388 ~g~~~~~GR~~d~i~~-~G~~v~~~~iE~~l~~~~~v~~~~v~~~~~~~~~~~~~~~v~~~~~~~---------------  451 (503)
T PRK04813        388 DGLLFYQGRIDFQIKL-NGYRIELEEIEQNLRQSSYVESAVVVPYNKDHKVQYLIAYVVPKEEDF---------------  451 (503)
T ss_pred             CCeEEEeccccceEEE-CcEEeCHHHHHHHHHhCCCcceEEEEEeeCCCCccEEEEEEEeccccc---------------
Confidence            9999999999999997 8999999999999999999999999985533   47888888776420               


Q ss_pred             HhccHHHHHHHHHHHHHHHHhCCCCCceeeeEEEEecCCCCCCCCccccccccchHHHHHHHH
Q 006111          583 LCSLVQLQNYILSELKNAAERNKLRGFEHIKGVILDPRPFDMERDLVTATLKKKRNKLLIYYQ  645 (660)
Q Consensus       583 ~~~~~~~~~~~~~~l~~~~~~~~l~~~~~p~~i~~~~~~~~~~~~P~t~~GKv~R~~l~~~~~  645 (660)
                           +....+.+++++++. .+++.|.+|..+.+++      .+|+|++||++|++|++++.
T Consensus       452 -----~~~~~~~~~l~~~~~-~~l~~~~~P~~i~~~~------~~P~t~~gKv~r~~l~~~~~  502 (503)
T PRK04813        452 -----EREFELTKAIKKELK-ERLMEYMIPRKFIYRD------SLPLTPNGKIDRKALIEEVN  502 (503)
T ss_pred             -----cccchhHHHHHHHHH-hhCccccCCeEEEEec------cCCCCCCCCCcHHHHHHHhc
Confidence                 011123345555554 6799999999999874      46899999999999998875

>PRK08974 long-chain-fatty-acid--CoA ligase; Validated

Probab=100.00  E-value=2e-58  Score=512.90  Aligned_cols=515  Identities=22%  Similarity=0.281  Sum_probs=395.0

Q ss_pred             CCcHHHHHHHHHHhCCCCCceeeeccccCCCCCceEEeHHHHHHHHHHHHHHHHH-cCCCCCCEEEEEeCCchhHHHHHH
Q 006111           41 LNTAWDIFSMSVQKYPGNRMLGWRPFVDGKFGPYVWKTYKEVYEEVLQIVSALRA-SGAEPGCRVGIYGANCPQWVEAME  119 (660)
Q Consensus        41 ~~ti~~~l~~~a~~~pd~~a~~~~~~~d~~~~~~~~~Ty~ql~~~v~~lA~~L~~-~Gl~~gd~V~l~~~n~~e~~~~~l  119 (660)
                      +.++.++|+.+++++|+++|+.+.   +      +.+||.||.++++++|.+|.+ .|+++||+|+++++|++++++++|
T Consensus        22 ~~~l~~~l~~~a~~~p~~~a~~~~---~------~~lTy~~l~~~~~~la~~L~~~~g~~~g~~V~i~~~~~~~~~~~~l   92 (560)
T PRK08974         22 YQSLVDMFEQAVARYADQPAFINM---G------EVMTFRKLEERSRAFAAYLQNGLGLKKGDRVALMMPNLLQYPIALF   92 (560)
T ss_pred             cccHHHHHHHHHHhCCCCceEEEC---C------ccccHHHHHHHHHHHHHHHHHhcCCCCCCEEEEECCCCHHHHHHHH
Confidence            467999999999999999999864   2      479999999999999999984 799999999999999999999999


Q ss_pred             HHHhCCCeEEecCCCCChhHHHHHHhcccceEEEEccchhhhhhccccccccCccEEEEecCCcH--HHHHH--------
Q 006111          120 ACNALSLICVPLYDTLGPGAVNFILDHAEIDFVFVQDKKVKELLSPDCRSAQRLRVMVCFTSLTA--EQKEM--------  189 (660)
Q Consensus       120 A~~~~G~~~vpl~~~~~~~~l~~~l~~~~~~~ii~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~--~~~~~--------  189 (660)
                      ||+++|++++|++|.++.+++.++++.+++++++++......+.+... . .....++.......  .....        
T Consensus        93 A~~~~G~~~v~l~~~~~~~~~~~~l~~~~~~~ii~~~~~~~~~~~~~~-~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  170 (560)
T PRK08974         93 GILRAGMIVVNVNPLYTPRELEHQLNDSGAKAIVIVSNFAHTLEKVVF-K-TPVKHVILTRMGDQLSTAKGTLVNFVVKY  170 (560)
T ss_pred             HHHHcCcEEeccCccCCHHHHHHHHHhcCceEEEEeccccHHHHHHhh-h-cCcceEEEecccccccccccccccchhhh
Confidence            999999999999999999999999999999999998765443322111 0 11112221110000  00000        


Q ss_pred             -----HhhCCcceeeHHHHHhcCccCCccCCCCCCCceEEEEecCCCCCCCceeeecchhHHHHhhhhhhhcccccCCCC
Q 006111          190 -----AVQTGIKPYSWDEFLHLGKVNEMEILPPQPFNICTIMYTSGTSGDPKGVVLTHETIATFVSGVDLFLDQFEDKMT  264 (660)
Q Consensus       190 -----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~TSGTTG~pK~v~~th~~l~~~~~~~~~~~~~~~~~~~  264 (660)
                           .........++.+................++++++++|||||||.||+|.++|.++...+......+..  ....
T Consensus       171 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~i~~TSGtTG~PK~v~~t~~~l~~~~~~~~~~~~~--~~~~  248 (560)
T PRK08974        171 IKRLVPKYHLPDAISFRSALHKGRRMQYVKPELVPEDLAFLQYTGGTTGVAKGAMLTHRNMLANLEQAKAAYGP--LLHP  248 (560)
T ss_pred             cccccccccCCCcccHHHHhhccCCCCCCCCCCCCCCeEEEEECCCCCCCCcEEEEchHHHHHHHHHHHHhhcc--ccCC
Confidence                 000000111222222222111111223467899999999999999999999999998766544332210  0133


Q ss_pred             CCcEEEEecChhHHHHHHH-HHHHhhcCcEEEEecC--ChhhHHHHhhhhcCeEEEechHHHHHHHHHHHHHHHhhchHH
Q 006111          265 VDDVYLSFLPLAHILDRVI-EEYFFRRGASVGYYHG--DLNALRDDLMELKPTLLAGVPRVFEKIHEGIKKALEELRPLR  341 (660)
Q Consensus       265 ~~~~~l~~~pl~~~~g~~~-~l~~l~~G~~~v~~~~--~~~~~~~~i~~~~~t~~~~~p~~~~~l~~~~~~~~~~~~~~~  341 (660)
                      .++.++..+|++|.+++.. .+.++..|+++++...  ++..++..++++++|+++++|.++..+......         
T Consensus       249 ~~~~~~~~~p~~~~~~~~~~~~~~l~~g~~~~~~~~~~~~~~~~~~i~~~~~t~~~~~p~~~~~l~~~~~~---------  319 (560)
T PRK08974        249 GKELVVTALPLYHIFALTVNCLLFIELGGQNLLITNPRDIPGFVKELKKYPFTAITGVNTLFNALLNNEEF---------  319 (560)
T ss_pred             CccEEEEeCcHHHHHHHHHHHHHHhhcCCeEEEecCccCHHHHHHHHHhcCcceEcCcHHHHHHHHhCcCc---------
Confidence            4678889999999998765 5666888988777643  788999999999999999999999988642110         


Q ss_pred             HHHHHHHHHHHHHHHhhCCCCCCcchhhhHHHHHHHHHHhCCcEeEEEEccCCCCHHHHHHHHHhcCCceeeecCCCCCC
Q 006111          342 RRIFDALYKYKLAWMNMGYKQREASPLADLLAFRKVKARLGGRLRLVISGGAPLSTEVEEFLRVTCCAFLVQGYGLTETC  421 (660)
Q Consensus       342 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lr~i~~~G~~l~~~~~~~~~~~~~~~v~~~YG~tE~~  421 (660)
                                                  ...++        +++|.+++||+++++.+.+.|++.+|+++++.||+||++
T Consensus       320 ----------------------------~~~~~--------~~lr~~~~gg~~~~~~~~~~~~~~~g~~~~~~YG~tE~~  363 (560)
T PRK08974        320 ----------------------------QELDF--------SSLKLSVGGGMAVQQAVAERWVKLTGQYLLEGYGLTECS  363 (560)
T ss_pred             ----------------------------ccCCc--------cceeEEEecCccCCHHHHHHHHHHhCCcEEeeecccccC
Confidence                                        00111        389999999999999999999998899999999999999


Q ss_pred             CceecccCCCccccCccCCCccCeeEEeeecCCCCCCCCCCCCCceEEEccCCcccccCCCchhhhhcccCCccccCceE
Q 006111          422 GPTTVCFPDEMCMVGTAGPVSVYSELRLEEVPEMGYSPLDDPPCGEVCVRGKTLFSGYYKNPDLTRESIIDGWFHTGDIG  501 (660)
Q Consensus       422 ~~~~~~~~~~~~~~~~~G~~~~~~~v~ivd~~~~~~~~~~~~~~Gei~v~g~~~~~gy~~~~~~~~~~~~~g~~~TGDl~  501 (660)
                      ..++.+..+.....+++|.|++++++++++ +++.  .++.|+.|||+++|+.++.||+++++.+...|.+|||+|||++
T Consensus       364 ~~~~~~~~~~~~~~~~~G~~~~~~~~~i~~-~~~~--~~~~g~~Gel~v~g~~~~~gy~~~~~~~~~~~~~g~~~TGDl~  440 (560)
T PRK08974        364 PLVSVNPYDLDYYSGSIGLPVPSTEIKLVD-DDGN--EVPPGEPGELWVKGPQVMLGYWQRPEATDEVIKDGWLATGDIA  440 (560)
T ss_pred             ceeeccCCCCcccCCccccCcCCCEEEEEC-CCCC--CCCCCCceEEEEecCCcchhhcCChhhhhhhhhcCCcccCCEE
Confidence            887766554444457899999999999999 6654  4455689999999999999999999999888889999999999


Q ss_pred             EECCCCcEEEEeccCCeeEcCCCeeecchhHHHHHhcCcCcceEEEEecCCC---CeEEEEEEcChhhHHHHHHHCCCCC
Q 006111          502 QILPNGVVKIIDRKKNLIKISQGEYVALEYLENVYCVAPIIEDIWVYGDSLK---SMLVAVVVPCEEDTKKWAYSNGHAG  578 (660)
Q Consensus       502 ~~~~~G~l~~~GR~~d~i~~~~G~~v~~~~iE~~l~~~p~V~~~~V~~~~~~---~~~~a~v~~~~~~~~~~~~~~~~~~  578 (660)
                      +++++|.+++.||.+|+|++ +|.+++|.+||++|.+||+|.+++|++.++.   +.++++++..+..         .  
T Consensus       441 ~~~~~g~l~i~GR~~d~i~~-~G~~i~~~~IE~~l~~~~~v~~~~v~~~~~~~~g~~~~~~v~~~~~~---------~--  508 (560)
T PRK08974        441 VMDEEGFLRIVDRKKDMILV-SGFNVYPNEIEDVVMLHPKVLEVAAVGVPSEVSGEAVKIFVVKKDPS---------L--  508 (560)
T ss_pred             EEcCCceEEEEecccceEEe-CCEEECHHHHHHHHHhCCCeeEEEEEeeecCCcceEEEEEEECCCCC---------C--
Confidence            99999999999999999997 7999999999999999999999999987654   3566666544321         0  


Q ss_pred             cHHHHhccHHHHHHHHHHHHHHHHhCCCCCceeeeEEEEecCCCCCCCCccccccccchHHHHHHHHHHHH
Q 006111          579 SFLELCSLVQLQNYILSELKNAAERNKLRGFEHIKGVILDPRPFDMERDLVTATLKKKRNKLLIYYQVEID  649 (660)
Q Consensus       579 ~~~~~~~~~~~~~~~~~~l~~~~~~~~l~~~~~p~~i~~~~~~~~~~~~P~t~~GKv~R~~l~~~~~~~i~  649 (660)
                            .        .+++.+++. ..|+.|.+|..+.++      +.+|+|++||++|+.|++...+.++
T Consensus       509 ------~--------~~~l~~~l~-~~l~~~~~P~~~~~~------~~lP~t~~GK~~r~~l~~~~~~~~~  558 (560)
T PRK08974        509 ------T--------EEELITHCR-RHLTGYKVPKLVEFR------DELPKSNVGKILRRELRDEARAKVD  558 (560)
T ss_pred             ------C--------HHHHHHHHH-hhcccccCCcEEEEh------hhCCCCCCCcEeHHHHHHHHHhhhc
Confidence                  1        122333443 678899999999987      4458999999999999988876654

>PRK12316 peptide synthase; Provisional

Probab=100.00  E-value=1.4e-59  Score=618.35  Aligned_cols=483  Identities=20%  Similarity=0.206  Sum_probs=402.4

Q ss_pred             CCcHHHHHHHHHHhCCCCCceeeeccccCCCCCceEEeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEeCCchhHHHHHHH
Q 006111           41 LNTAWDIFSMSVQKYPGNRMLGWRPFVDGKFGPYVWKTYKEVYEEVLQIVSALRASGAEPGCRVGIYGANCPQWVEAMEA  120 (660)
Q Consensus        41 ~~ti~~~l~~~a~~~pd~~a~~~~~~~d~~~~~~~~~Ty~ql~~~v~~lA~~L~~~Gl~~gd~V~l~~~n~~e~~~~~lA  120 (660)
                      ..++.++|+++++++|+++|+++.   +      +++||+||.++++++|+.|.+.|+++|++|+++++|++++++++||
T Consensus       510 ~~~~~~~~~~~a~~~p~~~A~~~~---~------~~~TY~eL~~~~~~lA~~L~~~gv~~g~~V~l~~~~s~~~i~~~la  580 (5163)
T PRK12316        510 QRGVHRLFEEQVERTPEAPALAFG---E------ETLDYAELNRRANRLAHALIERGVGPDVLVGVAMERSIEMVVALLA  580 (5163)
T ss_pred             CCCHHHHHHHHHHHCCCCeEEEeC---C------ceEcHHHHHHHHHHHHHHHHHcCCCCCCEEEEEeCCCHHHHHHHHH
Confidence            468999999999999999999875   3      4899999999999999999999999999999999999999999999


Q ss_pred             HHhCCCeEEecCCCCChhHHHHHHhcccceEEEEccchhhhhhccccccccCccEEEEecCCcHHHHHHHhhCCcceeeH
Q 006111          121 CNALSLICVPLYDTLGPGAVNFILDHAEIDFVFVQDKKVKELLSPDCRSAQRLRVMVCFTSLTAEQKEMAVQTGIKPYSW  200 (660)
Q Consensus       121 ~~~~G~~~vpl~~~~~~~~l~~~l~~~~~~~ii~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~  200 (660)
                      |+++|++++|++|.++.+++..+++.++++++|++......+..      .....++.++....                
T Consensus       581 ~~~aG~~~vpld~~~p~~rl~~il~~~~~~~~l~~~~~~~~~~~------~~~~~~~~~~~~~~----------------  638 (5163)
T PRK12316        581 ILKAGGAYVPLDPEYPAERLAYMLEDSGVQLLLSQSHLGRKLPL------AAGVQVLDLDRPAA----------------  638 (5163)
T ss_pred             HHHcCCEEeccCccCcHHHHHHHHHhCCCCEEEEChhhhhhCCc------ccCceEEEecCcch----------------
Confidence            99999999999999999999999999999999998765443211      10112233322110                


Q ss_pred             HHHHhcCccCCccCCCCCCCceEEEEecCCCCCCCceeeecchhHHHHhhhhhhhcccccCCCCCCcEEEEecChhHHHH
Q 006111          201 DEFLHLGKVNEMEILPPQPFNICTIMYTSGTSGDPKGVVLTHETIATFVSGVDLFLDQFEDKMTVDDVYLSFLPLAHILD  280 (660)
Q Consensus       201 ~~~~~~~~~~~~~~~~~~~~~~~~i~~TSGTTG~pK~v~~th~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~pl~~~~g  280 (660)
                        ..... ....+.....++++++|+|||||||.||||+++|+++.+.+.+....+     ++..++++++.+|++|..+
T Consensus       639 --~~~~~-~~~~~~~~~~~~~~a~ii~TSGSTG~PKgV~~~h~~l~~~~~~~~~~~-----~~~~~d~~l~~~p~~fd~~  710 (5163)
T PRK12316        639 --WLEGY-SEENPGTELNPENLAYVIYTSGSTGKPKGAGNRHRALSNRLCWMQQAY-----GLGVGDTVLQKTPFSFDVS  710 (5163)
T ss_pred             --hhccC-CCCCCCCCCCCCCeEEEEECCCcCCCCCEeeEcCHHHHHHHHHHHHhc-----CCCCCCEEEeeCCeehHHH
Confidence              00000 112222345688999999999999999999999999999998887777     8889999999999999999


Q ss_pred             HHHHHHHhhcCcEEEEecC----ChhhHHHHhhhhcCeEEEechHHHHHHHHHHHHHHHhhchHHHHHHHHHHHHHHHHH
Q 006111          281 RVIEEYFFRRGASVGYYHG----DLNALRDDLMELKPTLLAGVPRVFEKIHEGIKKALEELRPLRRRIFDALYKYKLAWM  356 (660)
Q Consensus       281 ~~~~l~~l~~G~~~v~~~~----~~~~~~~~i~~~~~t~~~~~p~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  356 (660)
                      +..++.+++.|+++++.+.    ++..+++.|+++++|++.++|++++.|.+....                        
T Consensus       711 ~~~~~~~L~~G~~l~i~~~~~~~~~~~~~~~i~~~~vt~~~~~Ps~~~~l~~~~~~------------------------  766 (5163)
T PRK12316        711 VWEFFWPLMSGARLVVAAPGDHRDPAKLVELINREGVDTLHFVPSMLQAFLQDEDV------------------------  766 (5163)
T ss_pred             HHHHHHHHhCCCEEEECCccccCCHHHHHHHHHHcCCeEEEeCHHHHHHHHhcccc------------------------
Confidence            8888999999999999853    889999999999999999999999988642100                        


Q ss_pred             hhCCCCCCcchhhhHHHHHHHHHHhCCcEeEEEEccCCCCHHHHHHHHHhc-CCceeeecCCCCCCCceecccC-CCccc
Q 006111          357 NMGYKQREASPLADLLAFRKVKARLGGRLRLVISGGAPLSTEVEEFLRVTC-CAFLVQGYGLTETCGPTTVCFP-DEMCM  434 (660)
Q Consensus       357 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~lr~i~~~G~~l~~~~~~~~~~~~-~~~v~~~YG~tE~~~~~~~~~~-~~~~~  434 (660)
                                             ...+++|.+++||+++++++.+.+.+.+ ++++++.||+||++..++.... .....
T Consensus       767 -----------------------~~~~~l~~~~~gGe~l~~~~~~~~~~~~~~~~l~n~YG~TE~~~~~~~~~~~~~~~~  823 (5163)
T PRK12316        767 -----------------------ASCTSLRRIVCSGEALPADAQEQVFAKLPQAGLYNLYGPTEAAIDVTHWTCVEEGGD  823 (5163)
T ss_pred             -----------------------ccCCCccEEEEeeccCCHHHHHHHHHhCCCCeEEeCcCcChheeeeeEEecccccCC
Confidence                                   0014899999999999999999987655 7899999999999965544332 22233


Q ss_pred             cCccCCCccCeeEEeeecCCCCCCCCCCCCCceEEEccCCcccccCCCchhhhhccc-------CCccccCceEEECCCC
Q 006111          435 VGTAGPVSVYSELRLEEVPEMGYSPLDDPPCGEVCVRGKTLFSGYYKNPDLTRESII-------DGWFHTGDIGQILPNG  507 (660)
Q Consensus       435 ~~~~G~~~~~~~v~ivd~~~~~~~~~~~~~~Gei~v~g~~~~~gy~~~~~~~~~~~~-------~g~~~TGDl~~~~~~G  507 (660)
                      ..++|+|++|++++|+| +++.  +++.|+.|||+|+|++++.||+++++.+.+.|.       ++||+|||+|++++||
T Consensus       824 ~~~iG~p~~~~~~~i~d-~~~~--~~p~G~~GEl~i~G~~v~~GYl~~~~~t~~~f~~~~~~~~~~~y~TGDl~~~~~dG  900 (5163)
T PRK12316        824 SVPIGRPIANLACYILD-ANLE--PVPVGVLGELYLAGRGLARGYHGRPGLTAERFVPSPFVAGERMYRTGDLARYRADG  900 (5163)
T ss_pred             CCCCccccCCCEEEEEC-CCCC--CCCCCCceEEEecccccChhhCCChhhhhhhCCCCCCCCCCeeEecCccEEECCCC
Confidence            46899999999999999 7665  445668999999999999999999999999882       3499999999999999


Q ss_pred             cEEEEeccCCeeEcCCCeeecchhHHHHHhcCcCcceEEEEecCCCCeEEEEEEcChhhHHHHHHHCCCCCcHHHHhccH
Q 006111          508 VVKIIDRKKNLIKISQGEYVALEYLENVYCVAPIIEDIWVYGDSLKSMLVAVVVPCEEDTKKWAYSNGHAGSFLELCSLV  587 (660)
Q Consensus       508 ~l~~~GR~~d~i~~~~G~~v~~~~iE~~l~~~p~V~~~~V~~~~~~~~~~a~v~~~~~~~~~~~~~~~~~~~~~~~~~~~  587 (660)
                      .|+++||.||+||+ +|++|+|.|||++|.+||+|.+|+|++.+ .+.++|+|++.++.        ..           
T Consensus       901 ~l~~~GR~d~~ik~-~G~rI~~~EIE~~l~~~p~V~~a~V~~~~-~~~lva~vv~~~~~--------~~-----------  959 (5163)
T PRK12316        901 VIEYAGRIDHQVKL-RGLRIELGEIEARLLEHPWVREAAVLAVD-GKQLVGYVVLESEG--------GD-----------  959 (5163)
T ss_pred             CEEeecccCCEEEE-ceEEcChHHHHHHHHhCCCcceEEEEEcC-CCeEEEEEEccCCC--------CC-----------
Confidence            99999999999998 79999999999999999999999999987 77999999987642        00           


Q ss_pred             HHHHHHHHHHHHHHHhCCCCCceeeeEEEEecCCCCCCCCccccccccchHHHHHHHH
Q 006111          588 QLQNYILSELKNAAERNKLRGFEHIKGVILDPRPFDMERDLVTATLKKKRNKLLIYYQ  645 (660)
Q Consensus       588 ~~~~~~~~~l~~~~~~~~l~~~~~p~~i~~~~~~~~~~~~P~t~~GKv~R~~l~~~~~  645 (660)
                           ..+.++++++ .+||.|++|+.|+++      +.+|+|++||++|++|.+.+.
T Consensus       960 -----~~~~l~~~l~-~~Lp~y~vP~~i~~v------~~lP~t~~GKidr~~L~~~~~ 1005 (5163)
T PRK12316        960 -----WREALKAHLA-ASLPEYMVPAQWLAL------ERLPLTPNGKLDRKALPAPEA 1005 (5163)
T ss_pred             -----CHHHHHHHHH-hhCCCccCCCeEEEH------hhCCCCCCCChhHHhhcCccc
Confidence                 1234455554 789999999999987      446899999999999986543

>PRK13390 acyl-CoA synthetase; Provisional

Probab=100.00  E-value=8.6e-59  Score=509.05  Aligned_cols=484  Identities=18%  Similarity=0.189  Sum_probs=373.7

Q ss_pred             HHHHhCCCCCceeeeccccCCCCCceEEeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEeCCchhHHHHHHHHHhCCCeEE
Q 006111           50 MSVQKYPGNRMLGWRPFVDGKFGPYVWKTYKEVYEEVLQIVSALRASGAEPGCRVGIYGANCPQWVEAMEACNALSLICV  129 (660)
Q Consensus        50 ~~a~~~pd~~a~~~~~~~d~~~~~~~~~Ty~ql~~~v~~lA~~L~~~Gl~~gd~V~l~~~n~~e~~~~~lA~~~~G~~~v  129 (660)
                      .+|+++|+++|+.+.   +..    +++||+||.++++++|..|.+.|+++||+|+++++|++++++++|||+++|++++
T Consensus         5 ~~a~~~p~~~a~~~~---~~~----~~lTy~el~~~~~~la~~L~~~gv~~gd~V~i~~~n~~~~~~~~la~~~~Ga~~~   77 (501)
T PRK13390          5 THAQIAPDRPAVIVA---ETG----EQVSYRQLDDDSAALARVLYDAGLRTGDVVALLSDNSPEALVVLWAALRSGLYIT   77 (501)
T ss_pred             hhhhhCCCCcEEEec---CCC----eEeeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEeCCCHHHHHHHHHHHHhCCEEe
Confidence            467789999999864   321    5899999999999999999999999999999999999999999999999999999


Q ss_pred             ecCCCCChhHHHHHHhcccceEEEEccchhhhhhccccccccCccEEEEecCCcHHHHHHHhhCCcceeeHHHHHhcCcc
Q 006111          130 PLYDTLGPGAVNFILDHAEIDFVFVQDKKVKELLSPDCRSAQRLRVMVCFTSLTAEQKEMAVQTGIKPYSWDEFLHLGKV  209 (660)
Q Consensus       130 pl~~~~~~~~l~~~l~~~~~~~ii~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  209 (660)
                      |+++.++.+++..++..++++++++++........ ..   ......+.+.....           ....+.+.....  
T Consensus        78 ~l~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~-~~---~~~~~~~~~~~~~~-----------~~~~~~~~~~~~--  140 (501)
T PRK13390         78 AINHHLTAPEADYIVGDSGARVLVASAALDGLAAK-VG---ADLPLRLSFGGEID-----------GFGSFEAALAGA--  140 (501)
T ss_pred             ccccCCCHHHHHHHHHhcCCcEEEEcchhhhHHHH-hh---hccceEEEecCccc-----------ccccHHHHhccc--
Confidence            99999999999999999999999998754332211 10   01111111111000           011233322211  


Q ss_pred             CCccCCCCCCCceEEEEecCCCCCCCceeee--cchhHHHHhhh----hhhhcccccCCCCCCcEEEEecChhHHHHHHH
Q 006111          210 NEMEILPPQPFNICTIMYTSGTSGDPKGVVL--THETIATFVSG----VDLFLDQFEDKMTVDDVYLSFLPLAHILDRVI  283 (660)
Q Consensus       210 ~~~~~~~~~~~~~~~i~~TSGTTG~pK~v~~--th~~l~~~~~~----~~~~~~~~~~~~~~~~~~l~~~pl~~~~g~~~  283 (660)
                      .  + .....++.++|+|||||||.||+|++  +|.++......    ....+     .+..+++++..+|++|.+++..
T Consensus       141 ~--~-~~~~~~~~a~i~~TSGTTG~PKgV~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~p~~h~~~~~~  212 (501)
T PRK13390        141 G--P-RLTEQPCGAVMLYSSGTTGFPKGIQPDLPGRDVDAPGDPIVAIARAFY-----DISESDIYYSSAPIYHAAPLRW  212 (501)
T ss_pred             C--C-CCCCCcccEEEEeCCCCCCCCCEEEeeccccccccchhhhHhhHHHHh-----CCCCCCeEEecccchhhhHHHH
Confidence            0  0 01122357999999999999999996  45554432211    11122     6788999999999999998876


Q ss_pred             HHHHhhcCcEEEEecC-ChhhHHHHhhhhcCeEEEechHHHHHHHHHHHHHHHhhchHHHHHHHHHHHHHHHHHhhCCCC
Q 006111          284 EEYFFRRGASVGYYHG-DLNALRDDLMELKPTLLAGVPRVFEKIHEGIKKALEELRPLRRRIFDALYKYKLAWMNMGYKQ  362 (660)
Q Consensus       284 ~l~~l~~G~~~v~~~~-~~~~~~~~i~~~~~t~~~~~p~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  362 (660)
                      ....+..|+++++.+. ++..+++.|+++++|++.++|+++..+........                            
T Consensus       213 ~~~~~~~g~~~~~~~~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~----------------------------  264 (501)
T PRK13390        213 CSMVHALGGTVVLAKRFDAQATLGHVERYRITVTQMVPTMFVRLLKLDADVR----------------------------  264 (501)
T ss_pred             HHHHHhcCceEEEcCCcCHHHHHHHHHHcCCeEEEecHHHHHHHHhccchhc----------------------------
Confidence            5556778999988775 89999999999999999999999988764211100                            


Q ss_pred             CCcchhhhHHHHHHHHHHhCCcEeEEEEccCCCCHHHHHHHHHhcCCceeeecCCCCCCCceecccCCCccccCccCCCc
Q 006111          363 REASPLADLLAFRKVKARLGGRLRLVISGGAPLSTEVEEFLRVTCCAFLVQGYGLTETCGPTTVCFPDEMCMVGTAGPVS  442 (660)
Q Consensus       363 ~~~~~~~~~~~~~~~~~~~~~~lr~i~~~G~~l~~~~~~~~~~~~~~~v~~~YG~tE~~~~~~~~~~~~~~~~~~~G~~~  442 (660)
                             ...++        +++|.++++|+++++++.+.+.+.++.++++.||+||+++++...........+++|+|+
T Consensus       265 -------~~~~~--------~~l~~v~~~g~~~~~~~~~~~~~~~~~~~~~~YG~tE~~~~~~~~~~~~~~~~~~~G~~~  329 (501)
T PRK13390        265 -------TRYDV--------SSLRAVIHAAAPCPVDVKHAMIDWLGPIVYEYYSSTEAHGMTFIDSPDWLAHPGSVGRSV  329 (501)
T ss_pred             -------ccCCh--------hhhheEEEcCCCCCHHHHHHHHHhcCCceeeeecccccCceEEecchhhccCCCCcCCcc
Confidence                   00011        388999999999999999999998899999999999998765543322233447899999


Q ss_pred             cCeeEEeeecCCCCCCCCCCCCCceEEEccCCcccccCCCchhhhhccc---CCccccCceEEECCCCcEEEEeccCCee
Q 006111          443 VYSELRLEEVPEMGYSPLDDPPCGEVCVRGKTLFSGYYKNPDLTRESII---DGWFHTGDIGQILPNGVVKIIDRKKNLI  519 (660)
Q Consensus       443 ~~~~v~ivd~~~~~~~~~~~~~~Gei~v~g~~~~~gy~~~~~~~~~~~~---~g~~~TGDl~~~~~~G~l~~~GR~~d~i  519 (660)
                      ++ .++++| +++.  ++..|+.|||+++|++++.||+++++.+.+.|.   ++|++|||+|++|++|.+++.||.||+|
T Consensus       330 ~g-~~~i~d-~~~~--~~~~g~~Gel~v~~~~~~~gy~~~~~~t~~~~~~~~~~w~~tGDl~~~~~dg~l~~~gR~~~~i  405 (501)
T PRK13390        330 LG-DLHICD-DDGN--ELPAGRIGTVYFERDRLPFRYLNDPEKTAAAQHPAHPFWTTVGDLGSVDEDGYLYLADRKSFMI  405 (501)
T ss_pred             cc-eEEEEC-CCCC--CCCCCCceEEEEecCCccccccCChhhhHHhhccCCCceEEcCceEEECCCCeEEEeeccccce
Confidence            99 699998 6655  445678999999999999999999999988772   6899999999999999999999999999


Q ss_pred             EcCCCeeecchhHHHHHhcCcCcceEEEEecCCC---CeEEEEEEcChhhHHHHHHHCCCCCcHHHHhccHHHHHHHHHH
Q 006111          520 KISQGEYVALEYLENVYCVAPIIEDIWVYGDSLK---SMLVAVVVPCEEDTKKWAYSNGHAGSFLELCSLVQLQNYILSE  596 (660)
Q Consensus       520 ~~~~G~~v~~~~iE~~l~~~p~V~~~~V~~~~~~---~~~~a~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  596 (660)
                      ++ +|++|+|.+||++|.+||+|.+|+|++.+++   +.+++++++..+..                 ...    ...++
T Consensus       406 ~~-~G~~v~p~eIE~~l~~~~~v~~~~v~~~~~~~~~e~~~~~v~~~~~~~-----------------~~~----~~~~~  463 (501)
T PRK13390        406 IS-GGVNIYPQETENALTMHPAVHDVAVIGVPDPEMGEQVKAVIQLVEGIR-----------------GSD----ELARE  463 (501)
T ss_pred             eE-CCeeeCHHHHHHHHHhCCCeeEEEEEeccCcccCceeEEEEEecCCCC-----------------cch----hhHHH
Confidence            96 8999999999999999999999999998764   47888888765320                 011    12334


Q ss_pred             HHHHHHhCCCCCceeeeEEEEecCCCCCCCCccccccccchHHHH
Q 006111          597 LKNAAERNKLRGFEHIKGVILDPRPFDMERDLVTATLKKKRNKLL  641 (660)
Q Consensus       597 l~~~~~~~~l~~~~~p~~i~~~~~~~~~~~~P~t~~GKv~R~~l~  641 (660)
                      |.++++ .+|+.|++|..+++++      .+|+|++||++|++|+
T Consensus       464 l~~~~~-~~l~~~~~P~~~~~~~------~iP~t~~GKi~r~~L~  501 (501)
T PRK13390        464 LIDYTR-SRIAHYKAPRSVEFVD------ELPRTPTGKLVKGLLR  501 (501)
T ss_pred             HHHHHH-HhcccCCCCcEEEEec------cCCCCCccceehhhcC
Confidence            555555 6799999999999874      4689999999999874

>PRK09029 O-succinylbenzoic acid--CoA ligase; Provisional

Probab=100.00  E-value=1.6e-58  Score=500.83  Aligned_cols=450  Identities=25%  Similarity=0.297  Sum_probs=372.0

Q ss_pred             CCcHHHHH-HHHHHhCCCCCceeeeccccCCCCCceEEeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEeCCchhHHHHHH
Q 006111           41 LNTAWDIF-SMSVQKYPGNRMLGWRPFVDGKFGPYVWKTYKEVYEEVLQIVSALRASGAEPGCRVGIYGANCPQWVEAME  119 (660)
Q Consensus        41 ~~ti~~~l-~~~a~~~pd~~a~~~~~~~d~~~~~~~~~Ty~ql~~~v~~lA~~L~~~Gl~~gd~V~l~~~n~~e~~~~~l  119 (660)
                      |+++.+.. ..+++++|+++|+.+.   +      +.+||.||.++++++|..|.+.|+++||+|+++++|+++++++++
T Consensus         1 ~~~~~~~~~~~~a~~~~~~~a~~~~---~------~~~ty~el~~~~~~~a~~L~~~g~~~~~~v~l~~~~~~~~~~~~l   71 (458)
T PRK09029          1 MMIFSDWPWRHWAQVRPQAIALRLN---D------EVLTWQQLCARIDQLAAGFAQQGVVEGSGVALRGKNSPETLLAYL   71 (458)
T ss_pred             CchhhcChHHHHHHhCCCceeeecC---C------cceeHHHHHHHHHHHHHHHHHcCCCCCCEEEEecCCCHHHHHHHH
Confidence            45555665 5558899999999864   2      479999999999999999999999999999999999999999999


Q ss_pred             HHHhCCCeEEecCCCCChhHHHHHHhcccceEEEEccchhhhhhccccccccCccEEEEecCCcHHHHHHHhhCCcceee
Q 006111          120 ACNALSLICVPLYDTLGPGAVNFILDHAEIDFVFVQDKKVKELLSPDCRSAQRLRVMVCFTSLTAEQKEMAVQTGIKPYS  199 (660)
Q Consensus       120 A~~~~G~~~vpl~~~~~~~~l~~~l~~~~~~~ii~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~  199 (660)
                      ||+++|++++|+++..+.+++..+++++++++++++.+... +..        +...                      .
T Consensus        72 a~~~~G~~~v~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~-~~~--------~~~~----------------------~  120 (458)
T PRK09029         72 ALLQCGARVLPLNPQLPQPLLEELLPSLTLDFALVLEGENT-FSA--------LTSL----------------------H  120 (458)
T ss_pred             HHHHcCCEEeecCCCCCHHHHHHHHHhcCCCEEEEcCcccc-hhh--------cccc----------------------c
Confidence            99999999999999999999999999999999998776422 100        0000                      0


Q ss_pred             HHHHHhcCccCCccCCCCCCCceEEEEecCCCCCCCceeeecchhHHHHhhhhhhhcccccCCCCCCcEEEEecChhHHH
Q 006111          200 WDEFLHLGKVNEMEILPPQPFNICTIMYTSGTSGDPKGVVLTHETIATFVSGVDLFLDQFEDKMTVDDVYLSFLPLAHIL  279 (660)
Q Consensus       200 ~~~~~~~~~~~~~~~~~~~~~~~~~i~~TSGTTG~pK~v~~th~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~pl~~~~  279 (660)
                      +.     . ..........++++++++|||||||.||+|.+||++++..+......+     +...+++++..+|++|.+
T Consensus       121 ~~-----~-~~~~~~~~~~~~~~a~i~~TSGTTG~PKgv~~s~~~~~~~~~~~~~~~-----~~~~~~~~l~~~p~~h~~  189 (458)
T PRK09029        121 LQ-----L-VEGAHAVAWQPQRLATMTLTSGSTGLPKAAVHTAQAHLASAEGVLSLM-----PFTAQDSWLLSLPLFHVS  189 (458)
T ss_pred             cc-----c-ccccCcccCCCCCeEEEEECCCCCCCCCEEEEeHHHHHHHHHHHhhcC-----CCCccceEEEecCcHhhh
Confidence            00     0 011112344678999999999999999999999999999888776666     788899999999999999


Q ss_pred             HHHHHHHHhhcCcEEEEecCChhhHHHHhhhhcCeEEEechHHHHHHHHHHHHHHHhhchHHHHHHHHHHHHHHHHHhhC
Q 006111          280 DRVIEEYFFRRGASVGYYHGDLNALRDDLMELKPTLLAGVPRVFEKIHEGIKKALEELRPLRRRIFDALYKYKLAWMNMG  359 (660)
Q Consensus       280 g~~~~l~~l~~G~~~v~~~~~~~~~~~~i~~~~~t~~~~~p~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  359 (660)
                      |+...+.++..|+++++.+.  ..+...+  .++|.+..+|+++..+......                           
T Consensus       190 g~~~~~~~l~~G~~v~~~~~--~~~~~~i--~~~t~~~~~P~~~~~l~~~~~~---------------------------  238 (458)
T PRK09029        190 GQGIVWRWLYAGATLVVRDK--QPLEQAL--AGCTHASLVPTQLWRLLDNRSE---------------------------  238 (458)
T ss_pred             hhHHHHHHHhCCceEEeCCh--HHHHHHH--hhceeeecChHHHHHHHhcccc---------------------------
Confidence            98777778999999998763  5567776  4899999999999887542110                           


Q ss_pred             CCCCCcchhhhHHHHHHHHHHhCCcEeEEEEccCCCCHHHHHHHHHhcCCceeeecCCCCCCCceecccCCCccccCccC
Q 006111          360 YKQREASPLADLLAFRKVKARLGGRLRLVISGGAPLSTEVEEFLRVTCCAFLVQGYGLTETCGPTTVCFPDEMCMVGTAG  439 (660)
Q Consensus       360 ~~~~~~~~~~~~~~~~~~~~~~~~~lr~i~~~G~~l~~~~~~~~~~~~~~~v~~~YG~tE~~~~~~~~~~~~~~~~~~~G  439 (660)
                                            ..++|.+++||+++++.+.+.+.+. |.++++.||+||++...+.....   ...++|
T Consensus       239 ----------------------~~~l~~i~~gG~~~~~~~~~~~~~~-g~~~~~~YG~tE~~~~~~~~~~~---~~~~~G  292 (458)
T PRK09029        239 ----------------------PLSLKAVLLGGAAIPVELTEQAEQQ-GIRCWCGYGLTEMASTVCAKRAD---GLAGVG  292 (458)
T ss_pred             ----------------------CCcceEEEECCCCCCHHHHHHHHHc-CCcEeccccccccCcceeccCCC---CCCCCC
Confidence                                  0378999999999999999998864 99999999999998765543322   125699


Q ss_pred             CCccCeeEEeeecCCCCCCCCCCCCCceEEEccCCcccccCCCchhhhhcccCCccccCceEEECCCCcEEEEeccCCee
Q 006111          440 PVSVYSELRLEEVPEMGYSPLDDPPCGEVCVRGKTLFSGYYKNPDLTRESIIDGWFHTGDIGQILPNGVVKIIDRKKNLI  519 (660)
Q Consensus       440 ~~~~~~~v~ivd~~~~~~~~~~~~~~Gei~v~g~~~~~gy~~~~~~~~~~~~~g~~~TGDl~~~~~~G~l~~~GR~~d~i  519 (660)
                      .|++++++++++              |||+++|+.++.||+++++.+.....+|||+|||+|++| +|.+++.||.+|+|
T Consensus       293 ~~~~~~~~~i~~--------------gel~v~g~~~~~gY~~~~~~~~~~~~~~~~~TGD~~~~~-~g~l~~~gR~~d~i  357 (458)
T PRK09029        293 SPLPGREVKLVD--------------GEIWLRGASLALGYWRQGQLVPLVNDEGWFATRDRGEWQ-NGELTILGRLDNLF  357 (458)
T ss_pred             CCCCCCEEEEeC--------------CEEEEecCceeeeeecCccccccccCCCccCCCCcEEEe-CCEEEEecccccce
Confidence            999999999987              899999999999999998887665578999999999999 99999999999999


Q ss_pred             EcCCCeeecchhHHHHHhcCcCcceEEEEecCCC---CeEEEEEEcChhhHHHHHHHCCCCCcHHHHhccHHHHHHHHHH
Q 006111          520 KISQGEYVALEYLENVYCVAPIIEDIWVYGDSLK---SMLVAVVVPCEEDTKKWAYSNGHAGSFLELCSLVQLQNYILSE  596 (660)
Q Consensus       520 ~~~~G~~v~~~~iE~~l~~~p~V~~~~V~~~~~~---~~~~a~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  596 (660)
                      ++ +|.+|+|.+||++|++||.|.+|+|++.++.   +.++++|++....                  .        .++
T Consensus       358 ~~-~G~~v~p~eiE~~l~~~~~v~~~~v~~~~~~~~~~~~~a~v~~~~~~------------------~--------~~~  410 (458)
T PRK09029        358 FS-GGEGIQPEEIERVINQHPLVQQVFVVPVADAEFGQRPVAVVESDSEA------------------A--------VVN  410 (458)
T ss_pred             ee-CCEEeCHHHHHHHHhcCCCcceEEEEccCCcccCceEEEEEEcCccc------------------C--------HHH
Confidence            97 8999999999999999999999999998765   4788888876321                  1        234


Q ss_pred             HHHHHHhCCCCCceeeeEEEEecCCCCCCCCccccccccchHHHHHHHHHH
Q 006111          597 LKNAAERNKLRGFEHIKGVILDPRPFDMERDLVTATLKKKRNKLLIYYQVE  647 (660)
Q Consensus       597 l~~~~~~~~l~~~~~p~~i~~~~~~~~~~~~P~t~~GKv~R~~l~~~~~~~  647 (660)
                      |+++++ .+||.|++|..+.+++.      +|+|.+||++|+.|+++++..
T Consensus       411 l~~~~~-~~l~~~~~P~~~~~~~~------~p~t~~gKi~r~~L~~~~~~~  454 (458)
T PRK09029        411 LAEWLQ-DKLARFQQPVAYYLLPP------ELKNGGIKISRQALKEWVAQQ  454 (458)
T ss_pred             HHHHHH-hhchhccCCeEEEEecc------cccCcCCCcCHHHHHHHHHhc
Confidence            455554 68999999999998753      479999999999999888754

>PRK06814 acylglycerophosphoethanolamine acyltransferase; Provisional

Probab=100.00  E-value=3.9e-58  Score=550.84  Aligned_cols=498  Identities=18%  Similarity=0.165  Sum_probs=386.5

Q ss_pred             CCCCcHHHHHHHHHHhCC-CCCceeeeccccCCCCCceEEeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEeCCchhHHHH
Q 006111           39 SDLNTAWDIFSMSVQKYP-GNRMLGWRPFVDGKFGPYVWKTYKEVYEEVLQIVSALRASGAEPGCRVGIYGANCPQWVEA  117 (660)
Q Consensus        39 ~~~~ti~~~l~~~a~~~p-d~~a~~~~~~~d~~~~~~~~~Ty~ql~~~v~~lA~~L~~~Gl~~gd~V~l~~~n~~e~~~~  117 (660)
                      +...++.+.|.+.++++| ++.++.+.   ++     +++||+||.++++++|+.|++ |+++||+|+++++|+++++++
T Consensus       628 ~~~~~~~~~l~~~~~~~~~~~~ai~~~---~~-----~~~Ty~el~~~~~~lA~~L~~-g~~~gd~V~i~~~n~~~~~~~  698 (1140)
T PRK06814        628 DYDRTLFEALIEAAKIHGFKKLAVEDP---VN-----GPLTYRKLLTGAFVLGRKLKK-NTPPGENVGVMLPNANGAAVT  698 (1140)
T ss_pred             cccCCHHHHHHHHHHHcCCCCeEeECC---CC-----CccCHHHHHHHHHHHHHHHHh-cCCCCCeEEEEcCCchHHHHH
Confidence            345778888888888887 45666542   22     579999999999999999975 999999999999999999999


Q ss_pred             HHHHHhCCCeEEecCCCCChhHHHHHHhcccceEEEEccchhhhhh-ccccccccCccEEEEecCCcHHHHHHHhhCCcc
Q 006111          118 MEACNALSLICVPLYDTLGPGAVNFILDHAEIDFVFVQDKKVKELL-SPDCRSAQRLRVMVCFTSLTAEQKEMAVQTGIK  196 (660)
Q Consensus       118 ~lA~~~~G~~~vpl~~~~~~~~l~~~l~~~~~~~ii~~~~~~~~~~-~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~  196 (660)
                      ++||+++|++++|+|+..+.+++..++++++++++|+++....... ............++.+++....        ...
T Consensus       699 ~la~~~~G~v~v~l~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~--------~~~  770 (1140)
T PRK06814        699 FFALQSAGRVPAMINFSAGIANILSACKAAQVKTVLTSRAFIEKARLGPLIEALEFGIRIIYLEDVRAQ--------IGL  770 (1140)
T ss_pred             HHHHHHCCCEEEEcCCCCCHHHHHHHHHHcCCCEEEecHHHHhhhcchhHHHHhccCceEEEehHhhcc--------CCh
Confidence            9999999999999999999999999999999999999876543221 0000111122234444322100        000


Q ss_pred             eeeHHHHHhcCccCCccCCCCCCCceEEEEecCCCCCCCceeeecchhHHHHhhhhhhhcccccCCCCCCcEEEEecChh
Q 006111          197 PYSWDEFLHLGKVNEMEILPPQPFNICTIMYTSGTSGDPKGVVLTHETIATFVSGVDLFLDQFEDKMTVDDVYLSFLPLA  276 (660)
Q Consensus       197 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~TSGTTG~pK~v~~th~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~pl~  276 (660)
                      ...+.+..... ..........++|+++++|||||||.||+|.+||+++.+.+......+     ++..+|++++.+|++
T Consensus       771 ~~~~~~~~~~~-~~~~~~~~~~~~d~a~i~~TSGTTG~PKgv~~sh~~~~~~~~~~~~~~-----~~~~~d~~l~~~pl~  844 (1140)
T PRK06814        771 ADKIKGLLAGR-FPLVYFCNRDPDDPAVILFTSGSEGTPKGVVLSHRNLLANRAQVAARI-----DFSPEDKVFNALPVF  844 (1140)
T ss_pred             HHHHHHHhhcc-CCccccCCCCCCCcEEEEECCCccCCCcEEEecHHHHHHHHHHHHHhh-----CCCCcCEEEEecchH
Confidence            00011111111 011111135689999999999999999999999999998888777666     788999999999999


Q ss_pred             HHHHHHH-HHHHhhcCcEEEEecC--ChhhHHHHhhhhcCeEEEechHHHHHHHHHHHHHHHhhchHHHHHHHHHHHHHH
Q 006111          277 HILDRVI-EEYFFRRGASVGYYHG--DLNALRDDLMELKPTLLAGVPRVFEKIHEGIKKALEELRPLRRRIFDALYKYKL  353 (660)
Q Consensus       277 ~~~g~~~-~l~~l~~G~~~v~~~~--~~~~~~~~i~~~~~t~~~~~p~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~  353 (660)
                      |.+++.. .+.++..|+++++.+.  +...+.+.++++++|+++++|++++.+.+...                      
T Consensus       845 h~~g~~~~~~~~l~~G~~~~~~~~~~~~~~~~~~i~~~~~t~~~~~p~~l~~l~~~~~----------------------  902 (1140)
T PRK06814        845 HSFGLTGGLVLPLLSGVKVFLYPSPLHYRIIPELIYDTNATILFGTDTFLNGYARYAH----------------------  902 (1140)
T ss_pred             HHHHHHHHHHHHHHcCCEEEEecCcccHHHHHHHHHhcCCEEEEecHHHHHHHHhhcc----------------------
Confidence            9999854 6778999999998864  66778899999999999999999987754210                      


Q ss_pred             HHHhhCCCCCCcchhhhHHHHHHHHHHhCCcEeEEEEccCCCCHHHHHHHHHhcCCceeeecCCCCCCCceecccCCCcc
Q 006111          354 AWMNMGYKQREASPLADLLAFRKVKARLGGRLRLVISGGAPLSTEVEEFLRVTCCAFLVQGYGLTETCGPTTVCFPDEMC  433 (660)
Q Consensus       354 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lr~i~~~G~~l~~~~~~~~~~~~~~~v~~~YG~tE~~~~~~~~~~~~~~  433 (660)
                                       ..+        .+++|.+++||+++++++.+.+.+.+|+++++.||+||++..++...... .
T Consensus       903 -----------------~~~--------~~~lr~v~~gg~~l~~~~~~~~~~~~~~~~~~~YG~TE~~~~~~~~~~~~-~  956 (1140)
T PRK06814        903 -----------------PYD--------FRSLRYVFAGAEKVKEETRQTWMEKFGIRILEGYGVTETAPVIALNTPMH-N  956 (1140)
T ss_pred             -----------------ccc--------ccceeEEEEcCCcCCHHHHHHHHHHhCCcEEeccccccccceEEecCCCC-C
Confidence                             001        14899999999999999999999989999999999999998766554332 3


Q ss_pred             ccCccCCCccCeeEEeeecCCCCCCCCCCCCCceEEEccCCcccccCCCchhhh-hcccCCccccCceEEECCCCcEEEE
Q 006111          434 MVGTAGPVSVYSELRLEEVPEMGYSPLDDPPCGEVCVRGKTLFSGYYKNPDLTR-ESIIDGWFHTGDIGQILPNGVVKII  512 (660)
Q Consensus       434 ~~~~~G~~~~~~~v~ivd~~~~~~~~~~~~~~Gei~v~g~~~~~gy~~~~~~~~-~~~~~g~~~TGDl~~~~~~G~l~~~  512 (660)
                      ..+++|+|++++++++++ .++      .++.|||+++|++++.||++++.... ..+.+|||+|||+|++|+||++++.
T Consensus       957 ~~~~vG~p~~g~~~~~~~-~~~------~~~~Gel~v~g~~~~~gY~~~~~~~~~~~~~~g~~~TGDl~~~d~dG~l~~~ 1029 (1140)
T PRK06814        957 KAGTVGRLLPGIEYRLEP-VPG------IDEGGRLFVRGPNVMLGYLRAENPGVLEPPADGWYDTGDIVTIDEEGFITIK 1029 (1140)
T ss_pred             CCCcCCccCCCCeEEEee-cCC------CCCceEEEEeCCCcchhhcCCCCCCccccCCCCeEecCCEEEECCCCeEEEE
Confidence            347999999999999987 322      24679999999999999998764332 2236899999999999999999999


Q ss_pred             eccCCeeEcCCCeeecchhHHHHHhcCcCcceEEEEecCCC---CeEEEEEEcChhhHHHHHHHCCCCCcHHHHhccHHH
Q 006111          513 DRKKNLIKISQGEYVALEYLENVYCVAPIIEDIWVYGDSLK---SMLVAVVVPCEEDTKKWAYSNGHAGSFLELCSLVQL  589 (660)
Q Consensus       513 GR~~d~i~~~~G~~v~~~~iE~~l~~~p~V~~~~V~~~~~~---~~~~a~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  589 (660)
                      ||.||+|++ +|++|+|.+||++|.+|+.|.+|+|++.+++   +.+++++.. .+.                  +    
T Consensus      1030 GR~~d~i~~-~G~~v~~~eIE~~l~~~~~v~~~~vv~~~~~~~g~~~~~~~~~-~~~------------------~---- 1085 (1140)
T PRK06814       1030 GRAKRFAKI-AGEMISLAAVEELAAELWPDALHAAVSIPDARKGERIILLTTA-SDA------------------T---- 1085 (1140)
T ss_pred             ecccCeeee-CCEEECHHHHHHHHHhcCCcccEEEEEcccCCCCceEEEEEcC-CCc------------------C----
Confidence            999999997 8999999999999999999999999997654   355555432 211                  1    


Q ss_pred             HHHHHHHHHHHHHhCCCCCceeeeEEEEecCCCCCCCCccccccccchHHHHHHHHHHH
Q 006111          590 QNYILSELKNAAERNKLRGFEHIKGVILDPRPFDMERDLVTATLKKKRNKLLIYYQVEI  648 (660)
Q Consensus       590 ~~~~~~~l~~~~~~~~l~~~~~p~~i~~~~~~~~~~~~P~t~~GKv~R~~l~~~~~~~i  648 (660)
                          .+++.+++++..++.|++|+.+.+++      .+|+|++||++|++|++++.+.+
T Consensus      1086 ----~~~l~~~~~~~~l~~~~~P~~i~~v~------~lP~t~~GKi~r~~L~~~~~~~~ 1134 (1140)
T PRK06814       1086 ----RAAFLAHAKAAGASELMVPAEIITID------EIPLLGTGKIDYVAVTKLAEEAA 1134 (1140)
T ss_pred             ----HHHHHHHHHHcCCCcccCCcEEEEec------CcCCCCCCCCcHHHHHHHHHHhh
Confidence                13444455445799999999999874      46899999999999998877654

>PRK08162 acyl-CoA synthetase; Validated

Probab=100.00  E-value=1.3e-57  Score=505.03  Aligned_cols=508  Identities=24%  Similarity=0.274  Sum_probs=382.1

Q ss_pred             CcHHHHHHHHHHhCCCCCceeeeccccCCCCCceEEeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEeCCchhHHHHHHHH
Q 006111           42 NTAWDIFSMSVQKYPGNRMLGWRPFVDGKFGPYVWKTYKEVYEEVLQIVSALRASGAEPGCRVGIYGANCPQWVEAMEAC  121 (660)
Q Consensus        42 ~ti~~~l~~~a~~~pd~~a~~~~~~~d~~~~~~~~~Ty~ql~~~v~~lA~~L~~~Gl~~gd~V~l~~~n~~e~~~~~lA~  121 (660)
                      +++.+.|+..++.+|+++|+.+.   +      ..+||.||.+++.++|.+|.+.|+++||+|+++++|++++++++|||
T Consensus        18 ~~~~~~~~~~~~~~~~~~a~~~~---~------~~~ty~~L~~~~~~~a~~L~~~g~~~g~~v~i~~~~~~~~~~~~lA~   88 (545)
T PRK08162         18 LTPLSFLERAAEVYPDRPAVIHG---D------RRRTWAETYARCRRLASALARRGIGRGDTVAVLLPNIPAMVEAHFGV   88 (545)
T ss_pred             CCHHHHHHHHHHHCCCCeEEEEC---C------eEEEHHHHHHHHHHHHHHHHHhCCCCCCEEEEECCCchHHHHHHHHH
Confidence            67889999999999999999865   3      47999999999999999999999999999999999999999999999


Q ss_pred             HhCCCeEEecCCCCChhHHHHHHhcccceEEEEccchhhhhhccccccccCccEEEEecCCcHHHHHHHhhCCcceeeHH
Q 006111          122 NALSLICVPLYDTLGPGAVNFILDHAEIDFVFVQDKKVKELLSPDCRSAQRLRVMVCFTSLTAEQKEMAVQTGIKPYSWD  201 (660)
Q Consensus       122 ~~~G~~~vpl~~~~~~~~l~~~l~~~~~~~ii~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~  201 (660)
                      +++|++++|+++.++.+++..+++.++++.++++.+....+.+... ..+.. ..+.++.....   ..........++.
T Consensus        89 ~~~G~~~vpl~~~~~~~~~~~~l~~~~~~~i~~~~~~~~~~~~~~~-~~~~~-~~~~~~~~~~~---~~~~~~~~~~~~~  163 (545)
T PRK08162         89 PMAGAVLNTLNTRLDAASIAFMLRHGEAKVLIVDTEFAEVAREALA-LLPGP-KPLVIDVDDPE---YPGGRFIGALDYE  163 (545)
T ss_pred             HHhCcEEeccccccChHHHHHHHHhCCCeEEEEccchhhHHHHHHh-hCCCC-ceEEEecCccc---cccCCCcccccHH
Confidence            9999999999999999999999999999999999887655433221 11111 12222211100   0000111233455


Q ss_pred             HHHhcCccCCccCCCCCCCceEEEEecCCCCCCCceeeecchhHHHHhhhhhhhcccccCCCCCCcEEEEecChhHHHHH
Q 006111          202 EFLHLGKVNEMEILPPQPFNICTIMYTSGTSGDPKGVVLTHETIATFVSGVDLFLDQFEDKMTVDDVYLSFLPLAHILDR  281 (660)
Q Consensus       202 ~~~~~~~~~~~~~~~~~~~~~~~i~~TSGTTG~pK~v~~th~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~pl~~~~g~  281 (660)
                      ++............+...+++++++|||||||.||+|+++|+++..........+     .+..++++++.+|++|..++
T Consensus       164 ~~~~~~~~~~~~~~~~~~~~~~~i~~TSGTTG~PKgv~~t~~~~~~~~~~~~~~~-----~~~~~~~~l~~~pl~h~~~~  238 (545)
T PRK08162        164 AFLASGDPDFAWTLPADEWDAIALNYTSGTTGNPKGVVYHHRGAYLNALSNILAW-----GMPKHPVYLWTLPMFHCNGW  238 (545)
T ss_pred             HHhccCCccccccCCCCCCCeEEEEeCCCCCCCCcEEEEecHHHHHHHHHHHHhc-----CCCCCCeeEeccCcHhhhhH
Confidence            5554322111111223456899999999999999999999998766655443333     57788899999999999988


Q ss_pred             HHHHHHhhcCcEEEEec-CChhhHHHHhhhhcCeEEEechHHHHHHHHHHHHHHHhhchHHHHHHHHHHHHHHHHHhhCC
Q 006111          282 VIEEYFFRRGASVGYYH-GDLNALRDDLMELKPTLLAGVPRVFEKIHEGIKKALEELRPLRRRIFDALYKYKLAWMNMGY  360 (660)
Q Consensus       282 ~~~l~~l~~G~~~v~~~-~~~~~~~~~i~~~~~t~~~~~p~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  360 (660)
                      ...+...+.|++.++.. .++..+++.++++++|++.++|.++..|++.......                         
T Consensus       239 ~~~~~~~~~~g~~~~~~~~~~~~~~~~l~~~~~t~~~~~P~~~~~l~~~~~~~~~-------------------------  293 (545)
T PRK08162        239 CFPWTVAARAGTNVCLRKVDPKLIFDLIREHGVTHYCGAPIVLSALINAPAEWRA-------------------------  293 (545)
T ss_pred             HHHHHHHHHccEEEEeCCCCHHHHHHHHHHcCCeEEEechHHHHHHHhCcccccc-------------------------
Confidence            76544433444444444 4999999999999999999999999988653111000                         


Q ss_pred             CCCCcchhhhHHHHHHHHHHhCCcEeEEEEccCCCCHHHHHHHHHhcCCceeeecCCCCCCCceecccCCC---------
Q 006111          361 KQREASPLADLLAFRKVKARLGGRLRLVISGGAPLSTEVEEFLRVTCCAFLVQGYGLTETCGPTTVCFPDE---------  431 (660)
Q Consensus       361 ~~~~~~~~~~~~~~~~~~~~~~~~lr~i~~~G~~l~~~~~~~~~~~~~~~v~~~YG~tE~~~~~~~~~~~~---------  431 (660)
                                          ...+.+.++++|+.+++.+.+.+++ +++++++.||+||+++.+..+....         
T Consensus       294 --------------------~~~~~~~~~~~g~~~~~~~~~~~~~-~~~~~~~~YG~tE~~~~~~~~~~~~~~~~~~~~~  352 (545)
T PRK08162        294 --------------------GIDHPVHAMVAGAAPPAAVIAKMEE-IGFDLTHVYGLTETYGPATVCAWQPEWDALPLDE  352 (545)
T ss_pred             --------------------CCccceEEEECCCCCCHHHHHHHHH-hCCceeecccccccCcceeecccccccccCCccc
Confidence                                0014556788999999999998876 4899999999999976555432211         


Q ss_pred             -ccccCccCCCcc-CeeEEeeecCCCCCCCCCCCCCceEEEccCCcccccCCCchhhhhcccCCccccCceEEECCCCcE
Q 006111          432 -MCMVGTAGPVSV-YSELRLEEVPEMGYSPLDDPPCGEVCVRGKTLFSGYYKNPDLTRESIIDGWFHTGDIGQILPNGVV  509 (660)
Q Consensus       432 -~~~~~~~G~~~~-~~~v~ivd~~~~~~~~~~~~~~Gei~v~g~~~~~gy~~~~~~~~~~~~~g~~~TGDl~~~~~~G~l  509 (660)
                       .....+.|.+++ +..++++|.+++..++.+.++.|||+|+|+.++.||+++++.+...|.+|||+|||+|++|++|.+
T Consensus       353 ~~~~~~~~g~~~~~~~~~~i~d~~~~~~~~~~g~~~Gel~v~g~~~~~gY~~~~~~~~~~~~~g~~~TGDl~~~d~dg~l  432 (545)
T PRK08162        353 RAQLKARQGVRYPLQEGVTVLDPDTMQPVPADGETIGEIMFRGNIVMKGYLKNPKATEEAFAGGWFHTGDLAVLHPDGYI  432 (545)
T ss_pred             hhhccCCCCcccCCcceEEEEcCCCCcccCCCCCceeEEEEecCcchhhhcCChhhhHHHhhCCCcccCceEEEcCCccE
Confidence             011245566554 335778872233333332234799999999999999999999999999999999999999999999


Q ss_pred             EEEeccCCeeEcCCCeeecchhHHHHHhcCcCcceEEEEecCCC---CeEEEEEEcChhhHHHHHHHCCCCCcHHHHhcc
Q 006111          510 KIIDRKKNLIKISQGEYVALEYLENVYCVAPIIEDIWVYGDSLK---SMLVAVVVPCEEDTKKWAYSNGHAGSFLELCSL  586 (660)
Q Consensus       510 ~~~GR~~d~i~~~~G~~v~~~~iE~~l~~~p~V~~~~V~~~~~~---~~~~a~v~~~~~~~~~~~~~~~~~~~~~~~~~~  586 (660)
                      +++||.+|+|++ +|.+|+|.+||+.|.+||+|.+|+|++.++.   +.+++++++.++..          .      . 
T Consensus       433 ~~~GR~~~~i~~-~G~~v~~~eIE~~l~~~~~v~~~~vv~~~~~~~~~~~~~~v~~~~~~~----------~------~-  494 (545)
T PRK08162        433 KIKDRSKDIIIS-GGENISSIEVEDVLYRHPAVLVAAVVAKPDPKWGEVPCAFVELKDGAS----------A------T-  494 (545)
T ss_pred             EEEecccceEEe-CCEEECHHHHHHHHHhCCcccEEEEEeeeccccCceEEEEEEeCCCCC----------C------C-
Confidence            999999999996 8999999999999999999999999986543   47888888776420          0      1 


Q ss_pred             HHHHHHHHHHHHHHHHhCCCCCceeeeEEEEecCCCCCCCCccccccccchHHHHHHHHHH
Q 006111          587 VQLQNYILSELKNAAERNKLRGFEHIKGVILDPRPFDMERDLVTATLKKKRNKLLIYYQVE  647 (660)
Q Consensus       587 ~~~~~~~~~~l~~~~~~~~l~~~~~p~~i~~~~~~~~~~~~P~t~~GKv~R~~l~~~~~~~  647 (660)
                             .++++++++ ..|+.|++|..+++.       .+|+|++||++|+.|++++...
T Consensus       495 -------~~~l~~~~~-~~l~~~~~P~~~~~~-------~iP~t~~gK~~r~~l~~~~~~l  540 (545)
T PRK08162        495 -------EEEIIAHCR-EHLAGFKVPKAVVFG-------ELPKTSTGKIQKFVLREQAKSL  540 (545)
T ss_pred             -------HHHHHHHHH-HhcccccCCcEEEec-------ccCCCCCcCCcHHHHHHHHhhh
Confidence                   123444444 678999999988753       2579999999999999886553

>PRK05691 peptide synthase; Validated

Probab=100.00  E-value=7.5e-59  Score=607.59  Aligned_cols=489  Identities=18%  Similarity=0.159  Sum_probs=400.1

Q ss_pred             CCCcHHHHHHHHHHhCCCCCceeeeccccCCCCCceEEeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEeCCchhHHHHHH
Q 006111           40 DLNTAWDIFSMSVQKYPGNRMLGWRPFVDGKFGPYVWKTYKEVYEEVLQIVSALRASGAEPGCRVGIYGANCPQWVEAME  119 (660)
Q Consensus        40 ~~~ti~~~l~~~a~~~pd~~a~~~~~~~d~~~~~~~~~Ty~ql~~~v~~lA~~L~~~Gl~~gd~V~l~~~n~~e~~~~~l  119 (660)
                      ...++++.|.++++++||++|+++.   ++      ++||+||.++++++|+.|.+.|+++|++|+|++++++++++++|
T Consensus      3718 ~~~~~~~~~~~~~~~~p~~~Av~~~---~~------~~tY~eL~~~~~~la~~L~~~gv~~~~~V~v~~~~s~~~~v~~l 3788 (4334)
T PRK05691       3718 LEQSYVRLFEAQVAAHPQRIAASCL---DQ------QWSYAELNRAANRLGHALRAAGVGVDQPVALLAERGLDLLGMIV 3788 (4334)
T ss_pred             cccCHHHHHHHHHHhCCCceEEEcC---CC------cccHHHHHHHHHHHHHHHHHcCCCCCCEEEEEeCCCHHHHHHHH
Confidence            4569999999999999999999987   54      79999999999999999999999999999999999999999999


Q ss_pred             HHHhCCCeEEecCCCCChhHHHHHHhcccceEEEEccchhhhhhccccccc-cCccEEEEecCCcHHHHHHHhhCCccee
Q 006111          120 ACNALSLICVPLYDTLGPGAVNFILDHAEIDFVFVQDKKVKELLSPDCRSA-QRLRVMVCFTSLTAEQKEMAVQTGIKPY  198 (660)
Q Consensus       120 A~~~~G~~~vpl~~~~~~~~l~~~l~~~~~~~ii~~~~~~~~~~~~~~~~~-~~~~~i~~~~~~~~~~~~~~~~~~~~~~  198 (660)
                      ||+++|++++|++|.++.+++..+++++++++++++............... .....++..++                 
T Consensus      3789 avlkaG~a~vpld~~~p~~r~~~il~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----------------- 3851 (4334)
T PRK05691       3789 GSFKAGAGYLPLDPGLPAQRLQRIIELSRTPVLVCSAACREQARALLDELGCANRPRLLVWEE----------------- 3851 (4334)
T ss_pred             HHHhhCcEEeCCCCCChHHHHHHHHHhcCCCEEEecCcccchhhhhhcccccccccceeeecc-----------------
Confidence            999999999999999999999999999999999999875443221111000 00111111111                 


Q ss_pred             eHHHHHhcCccCCccCCCCCCCceEEEEecCCCCCCCceeeecchhHHHHhhhhhhhcccccCCCCCCcEEEEecChhHH
Q 006111          199 SWDEFLHLGKVNEMEILPPQPFNICTIMYTSGTSGDPKGVVLTHETIATFVSGVDLFLDQFEDKMTVDDVYLSFLPLAHI  278 (660)
Q Consensus       199 ~~~~~~~~~~~~~~~~~~~~~~~~~~i~~TSGTTG~pK~v~~th~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~pl~~~  278 (660)
                          ..........+.....+++.+||+|||||||.||||+++|+++++.+......+     +++++++++...++.+.
T Consensus      3852 ----~~~~~~~~~~~~~~~~~~~~ayvi~TSGSTG~PKGV~~~h~~~~~~~~~~~~~~-----~~~~~~~~~~~~s~~fd 3922 (4334)
T PRK05691       3852 ----VQAGEVASHNPGIYSGPDNLAYVIYTSGSTGLPKGVMVEQRGMLNNQLSKVPYL-----ALSEADVIAQTASQSFD 3922 (4334)
T ss_pred             ----cccccccccCCCCCCCCCceEEEEECCCCCCCCCEEEeehHHHHHHHHHHHHhc-----CCCccceEEEecCCchh
Confidence                100011111222345689999999999999999999999999999998887777     89999999999999999


Q ss_pred             HHHHHHHHHhhcCcEEEEecC----ChhhHHHHhhhhcCeEEEechHHHHHHHHHHHHHHHhhchHHHHHHHHHHHHHHH
Q 006111          279 LDRVIEEYFFRRGASVGYYHG----DLNALRDDLMELKPTLLAGVPRVFEKIHEGIKKALEELRPLRRRIFDALYKYKLA  354 (660)
Q Consensus       279 ~g~~~~l~~l~~G~~~v~~~~----~~~~~~~~i~~~~~t~~~~~p~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~  354 (660)
                      .+....+.++..|+++++++.    ++..+.+.++++++|++.++|+++..+......                      
T Consensus      3923 ~s~~~~~~~l~~G~~l~i~~~~~~~~~~~l~~~~~~~~vt~~~~~Ps~~~~l~~~~~~---------------------- 3980 (4334)
T PRK05691       3923 ISVWQFLAAPLFGARVEIVPNAIAHDPQGLLAHVQAQGITVLESVPSLIQGMLAEDRQ---------------------- 3980 (4334)
T ss_pred             HHHHHHHHHHhCCCEEEEcCccccCCHHHHHHHHHHcCCeEEEeCHHHHHHHHhhccc----------------------
Confidence            999889999999999999874    688999999999999999999999887542110                      


Q ss_pred             HHhhCCCCCCcchhhhHHHHHHHHHHhCCcEeEEEEccCCCCHHHHHHHHHhc-CCceeeecCCCCCCCceecccCCC--
Q 006111          355 WMNMGYKQREASPLADLLAFRKVKARLGGRLRLVISGGAPLSTEVEEFLRVTC-CAFLVQGYGLTETCGPTTVCFPDE--  431 (660)
Q Consensus       355 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lr~i~~~G~~l~~~~~~~~~~~~-~~~v~~~YG~tE~~~~~~~~~~~~--  431 (660)
                                                ..++||.+++|||++++++.+.|.+.+ ++.++|.||+||++..++......  
T Consensus      3981 --------------------------~~~~lr~~~~gGe~l~~~~~~~~~~~~~~~~l~n~YG~TE~t~~~~~~~~~~~~ 4034 (4334)
T PRK05691       3981 --------------------------ALDGLRWMLPTGEAMPPELARQWLQRYPQIGLVNAYGPAECSDDVAFFRVDLAS 4034 (4334)
T ss_pred             --------------------------cCCCceEEEecCCcCCHHHHHHHHHhCCCCeEEeCccCccceeEEEEEEccccc
Confidence                                      013899999999999999999887765 789999999999998776544322  


Q ss_pred             -ccccCccCCCccCeeEEeeecCCCCCCCCCCCCCceEEEccCCcccccCCCchhhhhccc--------CCccccCceEE
Q 006111          432 -MCMVGTAGPVSVYSELRLEEVPEMGYSPLDDPPCGEVCVRGKTLFSGYYKNPDLTRESII--------DGWFHTGDIGQ  502 (660)
Q Consensus       432 -~~~~~~~G~~~~~~~v~ivd~~~~~~~~~~~~~~Gei~v~g~~~~~gy~~~~~~~~~~~~--------~g~~~TGDl~~  502 (660)
                       .....++|+|++++.+.|+| +.+..+  +.|..|||+|+|+++++||+++++.|.++|.        ++||+|||+|+
T Consensus      4035 ~~~~~~~iG~p~~~~~~~v~d-~~~~~~--p~g~~GEL~i~G~~v~~GY~~~~~~t~~~f~~~p~~~~~~~~yrTGDl~~ 4111 (4334)
T PRK05691       4035 TRGSYLPIGSPTDNNRLYLLD-EALELV--PLGAVGELCVAGTGVGRGYVGDPLRTALAFVPHPFGAPGERLYRTGDLAR 4111 (4334)
T ss_pred             ccCCcCCCCCccCCCEEEEEC-CCCCCC--CCCCceEEEEecccccccccCCcccchhhcccCCCCCCCceeeccCccee
Confidence             11225799999999999998 665544  4557999999999999999999999999982        36999999999


Q ss_pred             ECCCCcEEEEeccCCeeEcCCCeeecchhHHHHHhcCcCcceEEEEecC--CCCeEEEEEEcChhhHHHHHHHCCCCCcH
Q 006111          503 ILPNGVVKIIDRKKNLIKISQGEYVALEYLENVYCVAPIIEDIWVYGDS--LKSMLVAVVVPCEEDTKKWAYSNGHAGSF  580 (660)
Q Consensus       503 ~~~~G~l~~~GR~~d~i~~~~G~~v~~~~iE~~l~~~p~V~~~~V~~~~--~~~~~~a~v~~~~~~~~~~~~~~~~~~~~  580 (660)
                      +++||.++++||.|++||+ +|++|++.|||+.|.++|+|.+|+|+...  ..+.++|+++......             
T Consensus      4112 ~~~dG~l~~~GR~d~qvki-~G~riel~eIE~~l~~~~~v~~a~v~~~~~~~~~~l~a~~~~~~~~~------------- 4177 (4334)
T PRK05691       4112 RRSDGVLEYVGRIDHQVKI-RGYRIELGEIEARLHEQAEVREAAVAVQEGVNGKHLVGYLVPHQTVL------------- 4177 (4334)
T ss_pred             ecCCCcEEEecccCCcEEe-ceEEecHHHHHHHHHhCCCccEEEEEEecCCCCcEEEEEEeCCcccc-------------
Confidence            9999999999999999998 79999999999999999999999987532  2358999998876420             


Q ss_pred             HHHhccHHHHHHHHHHHHHHHHhCCCCCceeeeEEEEecCCCCCCCCccccccccchHHHHHH
Q 006111          581 LELCSLVQLQNYILSELKNAAERNKLRGFEHIKGVILDPRPFDMERDLVTATLKKKRNKLLIY  643 (660)
Q Consensus       581 ~~~~~~~~~~~~~~~~l~~~~~~~~l~~~~~p~~i~~~~~~~~~~~~P~t~~GKv~R~~l~~~  643 (660)
                          ...+.    .+.|++.++ ..||.|++|..++.+      +.+|+|++||+||++|.+.
T Consensus      4178 ----~~~~~----~~~l~~~l~-~~Lp~ymvP~~~~~~------~~lP~t~~GKidr~~L~~~ 4225 (4334)
T PRK05691       4178 ----AQGAL----LERIKQRLR-AELPDYMVPLHWLWL------DRLPLNANGKLDRKALPAL 4225 (4334)
T ss_pred             ----cchHH----HHHHHHHHH-hhCChhhcCcceeec------ccCCCCCCCcccHhhcCCC
Confidence                11122    233444444 789999999999876      4468999999999999764

>PRK09192 acyl-CoA synthetase; Validated

Probab=100.00  E-value=3.2e-58  Score=512.47  Aligned_cols=504  Identities=21%  Similarity=0.245  Sum_probs=382.3

Q ss_pred             CCCCCCCCCCCcHHHHHHHHHHhCCCCCceeeeccccCCCCCceEEeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEeCCc
Q 006111           32 NGFPSVDSDLNTAWDIFSMSVQKYPGNRMLGWRPFVDGKFGPYVWKTYKEVYEEVLQIVSALRASGAEPGCRVGIYGANC  111 (660)
Q Consensus        32 ~~~~~~~~~~~ti~~~l~~~a~~~pd~~a~~~~~~~d~~~~~~~~~Ty~ql~~~v~~lA~~L~~~Gl~~gd~V~l~~~n~  111 (660)
                      +.+|-+.++++++.++|+..++++|+..++ .     .+++.++.+||.||+.++.++|.+|.+.|+++||+|+++++|+
T Consensus        11 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~-----~~~~~~~~~Ty~eL~~~~~~~a~~L~~~gi~~gd~V~l~~~n~   84 (579)
T PRK09192         11 SSLPRRYADFPTLVEALDYAALGEAGMNFY-D-----RRGQLEEALPYQTLRARAEAGARRLLALGLKPGDRVALIAETD   84 (579)
T ss_pred             ccccccccchhhHHHHHHHhhccCCceEEE-e-----cCCCEEEEecHHHHHHHHHHHHHHHHHhCCCCCCEEEEEcCCc
Confidence            345677788899999999999998865543 2     2333457899999999999999999999999999999999999


Q ss_pred             hhHHHHHHHHHhCCCeEEecCCCCC-------hhHHHHHHhcccceEEEEccchhhhhhccccccccCccEEEEecCCcH
Q 006111          112 PQWVEAMEACNALSLICVPLYDTLG-------PGAVNFILDHAEIDFVFVQDKKVKELLSPDCRSAQRLRVMVCFTSLTA  184 (660)
Q Consensus       112 ~e~~~~~lA~~~~G~~~vpl~~~~~-------~~~l~~~l~~~~~~~ii~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~  184 (660)
                      +++++++|||+++|++++|+++..+       .+++..+++.++++++|+++.....+..... .. .  .++       
T Consensus        85 ~~~~~~~lA~~~~G~~~v~i~~~~~~~~~~~~~~~l~~~i~~~~~~~il~~~~~~~~~~~~~~-~~-~--~~~-------  153 (579)
T PRK09192         85 GDFVEAFFACQYAGLVPVPLPLPMGFGGRESYIAQLRGMLASAQPAAIITPDELLPWVNEATH-GN-P--LLH-------  153 (579)
T ss_pred             hhHHHHHHHHHHcCCeeEeccCCcccccchHHHHHHHHHHHhcCCCEEEeChHHHHHHHHhhc-cc-c--ccc-------
Confidence            9999999999999999999986543       5789999999999999998876554433211 00 0  000       


Q ss_pred             HHHHHHhhCCcceeeHHHHHhcCccCCccCCCCCCCceEEEEecCCCCCCCceeeecchhHHHHhhhhhh-hcccccCCC
Q 006111          185 EQKEMAVQTGIKPYSWDEFLHLGKVNEMEILPPQPFNICTIMYTSGTSGDPKGVVLTHETIATFVSGVDL-FLDQFEDKM  263 (660)
Q Consensus       185 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~TSGTTG~pK~v~~th~~l~~~~~~~~~-~~~~~~~~~  263 (660)
                                  ..++.++.... ..........++++++++|||||||.||+|.++|++++..+..... .+     ++
T Consensus       154 ------------~~~~~~~~~~~-~~~~~~~~~~~~~~a~i~~TSGTTG~PKgv~~sh~~~~~~~~~~~~~~~-----~~  215 (579)
T PRK09192        154 ------------VLSHAWFKALP-EADVALPRPTPDDIAYLQYSSGSTRFPRGVIITHRALMANLRAISHDGL-----KV  215 (579)
T ss_pred             ------------eeehhhhcccC-CCccccCCCCCCCeEEEEecCCCCCCCceEEeeHHHHHHHHHHHHhhcc-----cC
Confidence                        11222222221 1111223356789999999999999999999999999988876655 44     78


Q ss_pred             CCCcEEEEecChhHHHHHHH-HHHHhhcCcEEEEecC-----ChhhHHHHhhhhcCeEEEechHHHHHHHHHHHHHHHhh
Q 006111          264 TVDDVYLSFLPLAHILDRVI-EEYFFRRGASVGYYHG-----DLNALRDDLMELKPTLLAGVPRVFEKIHEGIKKALEEL  337 (660)
Q Consensus       264 ~~~~~~l~~~pl~~~~g~~~-~l~~l~~G~~~v~~~~-----~~~~~~~~i~~~~~t~~~~~p~~~~~l~~~~~~~~~~~  337 (660)
                      ..+|+++.++|++|.+++.. ++.++..|+++++.+.     ++..+++.+.++++++++.+|..+..+.......    
T Consensus       216 ~~~d~~l~~~p~~h~~g~~~~~~~~l~~g~~~~~~~~~~~~~~~~~~~~~i~~~~~t~~~~~~~~~~l~~~~~~~~----  291 (579)
T PRK09192        216 RPGDRCVSWLPFYHDMGLVGFLLTPVATQLSVDYLPTRDFARRPLQWLDLISRNRGTISYSPPFGYELCARRVNSK----  291 (579)
T ss_pred             CCCCeEEEeCCCCCcchhHHHHHHHHHhCCeeEeeCHHHHHHCHHHHHHHHHhcCcEEEeCCcHHHHHHHHhhccc----
Confidence            88999999999999999876 4556888999877652     6889999999999998877665555543211000    


Q ss_pred             chHHHHHHHHHHHHHHHHHhhCCCCCCcchhhhHHHHHHHHHHhCCcEeEEEEccCCCCHHHHHHHHHhcC------Cce
Q 006111          338 RPLRRRIFDALYKYKLAWMNMGYKQREASPLADLLAFRKVKARLGGRLRLVISGGAPLSTEVEEFLRVTCC------AFL  411 (660)
Q Consensus       338 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lr~i~~~G~~l~~~~~~~~~~~~~------~~v  411 (660)
                                                    .....++        +++|.+++||+++++.+.+.+.+.++      ..+
T Consensus       292 ------------------------------~~~~~~l--------~~lr~~~~gG~~l~~~~~~~~~~~~~~~g~~~~~~  333 (579)
T PRK09192        292 ------------------------------DLAELDL--------SCWRVAGIGADMIRPDVLHQFAEAFAPAGFDDKAF  333 (579)
T ss_pred             ------------------------------cccccch--------hhhheeEecCccCCHHHHHHHHHHHHhcCCChhhc
Confidence                                          0011122        38999999999999999999888763      348


Q ss_pred             eeecCCCCCCCceecccCCCc---------------------------cccCccCCCccCeeEEeeecCCCCCCCCCCCC
Q 006111          412 VQGYGLTETCGPTTVCFPDEM---------------------------CMVGTAGPVSVYSELRLEEVPEMGYSPLDDPP  464 (660)
Q Consensus       412 ~~~YG~tE~~~~~~~~~~~~~---------------------------~~~~~~G~~~~~~~v~ivd~~~~~~~~~~~~~  464 (660)
                      ++.||+||+++.++.......                           ....++|.++++++++|+| +++..  +..++
T Consensus       334 ~~~yG~TE~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vG~~~p~~~v~i~d-~~~~~--~~~g~  410 (579)
T PRK09192        334 MPSYGLAEATLAVSFSPLGSGIVVEEVDRDRLEYQGKAVAPGAETRRVRTFVNCGKALPGHEIEIRN-EAGMP--LPERV  410 (579)
T ss_pred             ccccccccceeEEeccCCCCCceEEEEcHHHhcCCceeeccCCCCccceeEeecCCcCCCcEEEEEC-CCCCC--CCCCC
Confidence            999999999876654432110                           1125789999999999999 66554  34567


Q ss_pred             CceEEEccCCcccccCCCchhhhhcc-cCCccccCceEEECCCCcEEEEeccCCeeEcCCCeeecchhHHHHHhcCcCcc
Q 006111          465 CGEVCVRGKTLFSGYYKNPDLTRESI-IDGWFHTGDIGQILPNGVVKIIDRKKNLIKISQGEYVALEYLENVYCVAPIIE  543 (660)
Q Consensus       465 ~Gei~v~g~~~~~gy~~~~~~~~~~~-~~g~~~TGDl~~~~~~G~l~~~GR~~d~i~~~~G~~v~~~~iE~~l~~~p~V~  543 (660)
                      .|||+++|+.++.||+++ ..+.+.+ .+|||+|||+|++ ++|+++++||.+|+|++ +|++|+|.+||+.|.+||+|.
T Consensus       411 ~Gel~i~g~~~~~gY~~~-~~~~~~~~~dgw~~TGDlg~~-~~G~l~~~GR~dd~i~~-~G~~v~p~eIE~~l~~~p~V~  487 (579)
T PRK09192        411 VGHICVRGPSLMSGYFRD-EESQDVLAADGWLDTGDLGYL-LDGYLYITGRAKDLIII-NGRNIWPQDIEWIAEQEPELR  487 (579)
T ss_pred             EEEEEecCCchhhhhcCC-ccccccccCCceeeccceeeE-ECCEEEEEeccccEEEE-CCCccCHHHHHHHHHhcCCcc
Confidence            999999999999999999 5555555 7999999999999 89999999999999997 899999999999999999998


Q ss_pred             --eEEEEecCCC--CeEEEEEEcChhhHHHHHHHCCCCCcHHHHhccHHHHHHHHHHHHHHHHhCCCCCceeeeEEEEec
Q 006111          544 --DIWVYGDSLK--SMLVAVVVPCEEDTKKWAYSNGHAGSFLELCSLVQLQNYILSELKNAAERNKLRGFEHIKGVILDP  619 (660)
Q Consensus       544 --~~~V~~~~~~--~~~~a~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~l~~~~~p~~i~~~~  619 (660)
                        +|+|++.+++  ..++++++...+.                    ....+.+.+.+.+.+.    +.+.+|..+.+++
T Consensus       488 ~~~~~v~~~~~~~~~~~~~~v~~~~~~--------------------~~~~~~l~~~~~~~l~----~~~~~~~~i~~~~  543 (579)
T PRK09192        488 SGDAAAFSIAQENGEKIVLLVQCRISD--------------------EERRGQLIHALAALVR----SEFGVEAAVELVP  543 (579)
T ss_pred             CCcEEEEEeccCCCeeEEEEEEecCCC--------------------hHHHHHHHHHHHHHHH----HHhCCCceEEEeC
Confidence              8999886654  3677777765431                    1111222333322221    2356676777763


Q ss_pred             CCCCCCCCccccccccchHHHHHHHHH
Q 006111          620 RPFDMERDLVTATLKKKRNKLLIYYQV  646 (660)
Q Consensus       620 ~~~~~~~~P~t~~GKv~R~~l~~~~~~  646 (660)
                          .+.||+|++||++|++|+++|..
T Consensus       544 ----~~~lP~t~~GKv~R~~l~~~~~~  566 (579)
T PRK09192        544 ----PHSLPRTSSGKLSRAKAKKRYLS  566 (579)
T ss_pred             ----CCCcCCCCCcchhHHHHHHHHHc
Confidence                24579999999999999999865

>PRK13391 acyl-CoA synthetase; Provisional

Probab=100.00  E-value=2.4e-57  Score=498.63  Aligned_cols=495  Identities=20%  Similarity=0.181  Sum_probs=385.8

Q ss_pred             HHHHHhCCCCCceeeeccccCCCCCceEEeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEeCCchhHHHHHHHHHhCCCeE
Q 006111           49 SMSVQKYPGNRMLGWRPFVDGKFGPYVWKTYKEVYEEVLQIVSALRASGAEPGCRVGIYGANCPQWVEAMEACNALSLIC  128 (660)
Q Consensus        49 ~~~a~~~pd~~a~~~~~~~d~~~~~~~~~Ty~ql~~~v~~lA~~L~~~Gl~~gd~V~l~~~n~~e~~~~~lA~~~~G~~~  128 (660)
                      ...++++|+++|+++.   ++.    ..+||.||.+++.++|..|.+.|+++|++|+++++|++++++++|||+++|+++
T Consensus         4 ~~~a~~~p~~~a~~~~---~~~----~~~ty~~l~~~~~~la~~L~~~g~~~~~~V~v~~~~~~~~~~~~~a~~~~G~~~   76 (511)
T PRK13391          4 GIHAQTTPDKPAVIMA---STG----EVVTYRELDERSNRLAHLFRSLGLKRGDHVAIFMENNLRYLEVCWAAERSGLYY   76 (511)
T ss_pred             hhhHhhCCCceEEEec---CCC----CEeeHHHHHHHHHHHHHHHHHcCCCCCCEEEEECCCCHHHHHHHHHHHHhccEE
Confidence            4577889999999874   222    579999999999999999999999999999999999999999999999999999


Q ss_pred             EecCCCCChhHHHHHHhcccceEEEEccchhhhhhccccccccCccEEEEecCCcHHHHHHHhhCCcceeeHHHHHhcCc
Q 006111          129 VPLYDTLGPGAVNFILDHAEIDFVFVQDKKVKELLSPDCRSAQRLRVMVCFTSLTAEQKEMAVQTGIKPYSWDEFLHLGK  208 (660)
Q Consensus       129 vpl~~~~~~~~l~~~l~~~~~~~ii~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  208 (660)
                      +++++.++.+.+..+++.++++.++++........+... ........+.......         ......+.+..... 
T Consensus        77 ~~l~~~~~~~~l~~~l~~~~~~~li~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~---------~~~~~~~~~~~~~~-  145 (511)
T PRK13391         77 TCVNSHLTPAEAAYIVDDSGARALITSAAKLDVARALLK-QCPGVRHRLVLDGDGE---------LEGFVGYAEAVAGL-  145 (511)
T ss_pred             eccccccCHHHHHHHHhccCCcEEEEchhhHHHHHHHHh-cCCCceEEEEecCCCC---------CcccccHHHHhcCC-
Confidence            999999999999999999999999999876654432221 1222233333332110         01122333333211 


Q ss_pred             cCCccCCCCCCCceEEEEecCCCCCCCceeeec--chhHHHHh---hhhhhhcccccCCCCCCcEEEEecChhHHHHHHH
Q 006111          209 VNEMEILPPQPFNICTIMYTSGTSGDPKGVVLT--HETIATFV---SGVDLFLDQFEDKMTVDDVYLSFLPLAHILDRVI  283 (660)
Q Consensus       209 ~~~~~~~~~~~~~~~~i~~TSGTTG~pK~v~~t--h~~l~~~~---~~~~~~~~~~~~~~~~~~~~l~~~pl~~~~g~~~  283 (660)
                        + .......++.++++|||||||.||+|.++  |.++....   ......+     ++..+++++..+|++|..++..
T Consensus       146 --~-~~~~~~~~~~a~il~TSGtTG~PKgv~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~l~~~p~~h~~~~~~  217 (511)
T PRK13391        146 --P-ATPIADESLGTDMLYSSGTTGRPKGIKRPLPEQPPDTPLPLTAFLQRLW-----GFRSDMVYLSPAPLYHSAPQRA  217 (511)
T ss_pred             --C-CCCCCCcccccEEEECCCCCCCCCEEEEccccchhhhhhHHHHHHHHhc-----CCCCCCeEEEcCCHHHHHHHHH
Confidence              1 11112345678999999999999999954  65543322   2222333     6778899999999999998887


Q ss_pred             HHHHhhcCcEEEEecC-ChhhHHHHhhhhcCeEEEechHHHHHHHHHHHHHHHhhchHHHHHHHHHHHHHHHHHhhCCCC
Q 006111          284 EEYFFRRGASVGYYHG-DLNALRDDLMELKPTLLAGVPRVFEKIHEGIKKALEELRPLRRRIFDALYKYKLAWMNMGYKQ  362 (660)
Q Consensus       284 ~l~~l~~G~~~v~~~~-~~~~~~~~i~~~~~t~~~~~p~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  362 (660)
                      .+.++..|+++++.+. ++..+++.++++++|++.++|+++..+.+......                            
T Consensus       218 ~~~~~~~g~~~~~~~~~~~~~~~~~i~~~~~t~~~~~p~~~~~l~~~~~~~~----------------------------  269 (511)
T PRK13391        218 VMLVIRLGGTVIVMEHFDAEQYLALIEEYGVTHTQLVPTMFSRMLKLPEEVR----------------------------  269 (511)
T ss_pred             HHHHHHcCceEEECCCCCHHHHHHHHHHhCCeEEEehHHHHHHHHhCchhhc----------------------------
Confidence            7788999999998876 99999999999999999999999988764211100                            


Q ss_pred             CCcchhhhHHHHHHHHHHhCCcEeEEEEccCCCCHHHHHHHHHhcCCceeeecCCCCCCCceecccCCCccccCccCCCc
Q 006111          363 REASPLADLLAFRKVKARLGGRLRLVISGGAPLSTEVEEFLRVTCCAFLVQGYGLTETCGPTTVCFPDEMCMVGTAGPVS  442 (660)
Q Consensus       363 ~~~~~~~~~~~~~~~~~~~~~~lr~i~~~G~~l~~~~~~~~~~~~~~~v~~~YG~tE~~~~~~~~~~~~~~~~~~~G~~~  442 (660)
                             +..+        .+++|.+++||+++++++.+.+.+.+|..+++.||+||++.++...........+++|.|+
T Consensus       270 -------~~~~--------~~~l~~~~~gg~~~~~~~~~~~~~~~g~~v~~~YG~tE~~~~~~~~~~~~~~~~~~vG~~~  334 (511)
T PRK13391        270 -------DKYD--------LSSLEVAIHAAAPCPPQVKEQMIDWWGPIIHEYYAATEGLGFTACDSEEWLAHPGTVGRAM  334 (511)
T ss_pred             -------ccCC--------ccceeEEEEccCCCCHHHHHHHHHHcCCceeeeeccccccceEEecCccccccCCCcCCcc
Confidence                   0001        1489999999999999999999998899999999999999876554433334457999999


Q ss_pred             cCeeEEeeecCCCCCCCCCCCCCceEEEccCCcccccCCCchhhhhcc-c-CCccccCceEEECCCCcEEEEeccCCeeE
Q 006111          443 VYSELRLEEVPEMGYSPLDDPPCGEVCVRGKTLFSGYYKNPDLTRESI-I-DGWFHTGDIGQILPNGVVKIIDRKKNLIK  520 (660)
Q Consensus       443 ~~~~v~ivd~~~~~~~~~~~~~~Gei~v~g~~~~~gy~~~~~~~~~~~-~-~g~~~TGDl~~~~~~G~l~~~GR~~d~i~  520 (660)
                      ++ .++++| +++..  .+.|+.|||+++|+ ++.||+++++.+...| . ++||+|||+|+++++|.+++.||.+|+|+
T Consensus       335 ~g-~~~i~d-~~~~~--~~~g~~Gel~~~g~-~~~gy~~~~~~~~~~~~~~~~w~~TGD~g~~~~~g~l~~~gR~~~~i~  409 (511)
T PRK13391        335 FG-DLHILD-DDGAE--LPPGEPGTIWFEGG-RPFEYLNDPAKTAEARHPDGTWSTVGDIGYVDEDGYLYLTDRAAFMII  409 (511)
T ss_pred             cc-eEEEEC-CCCCC--CCCCCceEEEEecC-cceEEcCChhHhHHhhccCCCEEecCCEEEECCCccEEEeccCCCEEE
Confidence            99 688888 66543  34567999999999 8889999999988887 3 49999999999999999999999999999


Q ss_pred             cCCCeeecchhHHHHHhcCcCcceEEEEecCCC---CeEEEEEEcChhhHHHHHHHCCCCCcHHHHhccHHHHHHHHHHH
Q 006111          521 ISQGEYVALEYLENVYCVAPIIEDIWVYGDSLK---SMLVAVVVPCEEDTKKWAYSNGHAGSFLELCSLVQLQNYILSEL  597 (660)
Q Consensus       521 ~~~G~~v~~~~iE~~l~~~p~V~~~~V~~~~~~---~~~~a~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l  597 (660)
                      + +|.++++.+||++|.+||.|.+|+|++.++.   +.+++++++..+..                 ...+    +.++|
T Consensus       410 ~-~G~~v~~~eie~~l~~~~~v~~~~v~~~~~~~~g~~~~~~~~~~~~~~-----------------~~~~----~~~~l  467 (511)
T PRK13391        410 S-GGVNIYPQEAENLLITHPKVADAAVFGVPNEDLGEEVKAVVQPVDGVD-----------------PGPA----LAAEL  467 (511)
T ss_pred             e-CCEEECHHHHHHHHHhCCCcceEEEEecCCcccCceeEEEEEECCCCC-----------------cccc----hHHHH
Confidence            6 8999999999999999999999999987644   36778887765320                 0111    23445


Q ss_pred             HHHHHhCCCCCceeeeEEEEecCCCCCCCCccccccccchHHHHHHHHH
Q 006111          598 KNAAERNKLRGFEHIKGVILDPRPFDMERDLVTATLKKKRNKLLIYYQV  646 (660)
Q Consensus       598 ~~~~~~~~l~~~~~p~~i~~~~~~~~~~~~P~t~~GKv~R~~l~~~~~~  646 (660)
                      +++++ .++|.|++|..|.+++      ++|+|++||++|+.|++.|..
T Consensus       468 ~~~~~-~~l~~~~~P~~i~~~~------~~P~t~~gKv~r~~l~~~~~~  509 (511)
T PRK13391        468 IAFCR-QRLSRQKCPRSIDFED------ELPRLPTGKLYKRLLRDRYWG  509 (511)
T ss_pred             HHHHH-hhcccCcCCcEEEEee------cCCCCCccceeHHHHHHHhhc
Confidence            55555 7899999999999874      458999999999999998753

>PRK07798 acyl-CoA synthetase; Validated

Probab=100.00  E-value=4.1e-57  Score=500.37  Aligned_cols=505  Identities=20%  Similarity=0.205  Sum_probs=391.8

Q ss_pred             cHHHHHHHHHHhCCCCCceeeeccccCCCCCceEEeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEeCCchhHHHHHHHHH
Q 006111           43 TAWDIFSMSVQKYPGNRMLGWRPFVDGKFGPYVWKTYKEVYEEVLQIVSALRASGAEPGCRVGIYGANCPQWVEAMEACN  122 (660)
Q Consensus        43 ti~~~l~~~a~~~pd~~a~~~~~~~d~~~~~~~~~Ty~ql~~~v~~lA~~L~~~Gl~~gd~V~l~~~n~~e~~~~~lA~~  122 (660)
                      |+.++|++.++++||++|+.+.    +     +.+||.||.++++++|..|.+.|+++||+|+++++|++++++++|||+
T Consensus         4 ~l~~~~~~~a~~~p~~~a~~~~----~-----~~~ty~el~~~~~~la~~L~~~g~~~~~~v~v~~~n~~~~~~~~~a~~   74 (533)
T PRK07798          4 NIADLFEAVADAVPDRVALVCG----D-----RRLTYAELEERANRLAHYLIAQGLGPGDHVGIYARNRIEYVEAMLGAF   74 (533)
T ss_pred             cHHHHHHHHHHhCCCceEEEEC----C-----ceeeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEcCCCHHHHHHHHHHH
Confidence            7899999999999999999875    2     589999999999999999999999999999999999999999999999


Q ss_pred             hCCCeEEecCCCCChhHHHHHHhcccceEEEEccchhhhhhccccccccCccEEEEecCCcHHHHHHHhhCCcceeeHHH
Q 006111          123 ALSLICVPLYDTLGPGAVNFILDHAEIDFVFVQDKKVKELLSPDCRSAQRLRVMVCFTSLTAEQKEMAVQTGIKPYSWDE  202 (660)
Q Consensus       123 ~~G~~~vpl~~~~~~~~l~~~l~~~~~~~ii~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~  202 (660)
                      ++|++++|+++.++.+++..+++.+++++++++......+.+.. ....+...++.+++.....      ......++.+
T Consensus        75 ~~G~~~v~l~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~  147 (533)
T PRK07798         75 KARAVPVNVNYRYVEDELRYLLDDSDAVALVYEREFAPRVAEVL-PRLPKLRTLVVVEDGSGND------LLPGAVDYED  147 (533)
T ss_pred             hcCeEEEecCcCCCHHHHHHHHhhcCCCEEEEchhhHHHHHHHh-ccCCCccEEEEecCCcccc------cCCccccHHH
Confidence            99999999999999999999999999999999987666554432 2334455566665432110      0012345666


Q ss_pred             HHhcCccCCccCCCCCCCceEEEEecCCCCCCCceeeecchhHHHHhhhhhhhccc----ccCCC------CCCcEEEEe
Q 006111          203 FLHLGKVNEMEILPPQPFNICTIMYTSGTSGDPKGVVLTHETIATFVSGVDLFLDQ----FEDKM------TVDDVYLSF  272 (660)
Q Consensus       203 ~~~~~~~~~~~~~~~~~~~~~~i~~TSGTTG~pK~v~~th~~l~~~~~~~~~~~~~----~~~~~------~~~~~~l~~  272 (660)
                      ++......  .......++.++++|||||||.||+|+++|+++..........+..    ....+      ..+++++..
T Consensus       148 ~~~~~~~~--~~~~~~~~~~~~i~~TSGTTG~PK~v~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  225 (533)
T PRK07798        148 ALAAGSPE--RDFGERSPDDLYLLYTGGTTGMPKGVMWRQEDIFRVLLGGRDFATGEPIEDEEELAKRAAAGPGMRRFPA  225 (533)
T ss_pred             HHhccCCc--CCCCCCCCCceEEEECCCCCCCCcEEEEecHHHHHHHhhhhhhhcccchhhhhhhcccccCCCCceEEEe
Confidence            66543221  1111233455799999999999999999999987655443221100    00011      567899999


Q ss_pred             cChhHHHHHHHHHHHhhcCcEEEEec--C-ChhhHHHHhhhhcCeEEEechHHHHH-HHHHHHHHHHhhchHHHHHHHHH
Q 006111          273 LPLAHILDRVIEEYFFRRGASVGYYH--G-DLNALRDDLMELKPTLLAGVPRVFEK-IHEGIKKALEELRPLRRRIFDAL  348 (660)
Q Consensus       273 ~pl~~~~g~~~~l~~l~~G~~~v~~~--~-~~~~~~~~i~~~~~t~~~~~p~~~~~-l~~~~~~~~~~~~~~~~~~~~~~  348 (660)
                      +|++|..++...+.+++.|+++++.+  . ++..+++.++++++|+++++|..+.. +...+. ..              
T Consensus       226 ~pl~~~~~~~~~~~~l~~G~~~~~~~~~~~~~~~~~~~i~~~~~t~~~~~~~~~~~~l~~~~~-~~--------------  290 (533)
T PRK07798        226 PPLMHGAGQWAAFAALFSGQTVVLLPDVRFDADEVWRTIEREKVNVITIVGDAMARPLLDALE-AR--------------  290 (533)
T ss_pred             cchhhhhhHHHHHHHHhcCceEEEecCCCcCHHHHHHHHHHhCCeEEEechHHHHHHHHHHhc-cc--------------
Confidence            99999999988889999999999998  4 89999999999999999999876643 322111 00              


Q ss_pred             HHHHHHHHhhCCCCCCcchhhhHHHHHHHHHHhCCcEeEEEEccCCCCHHHHHHHHHhc-CCceeeecCCCCCCCceecc
Q 006111          349 YKYKLAWMNMGYKQREASPLADLLAFRKVKARLGGRLRLVISGGAPLSTEVEEFLRVTC-CAFLVQGYGLTETCGPTTVC  427 (660)
Q Consensus       349 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lr~i~~~G~~l~~~~~~~~~~~~-~~~v~~~YG~tE~~~~~~~~  427 (660)
                                                   .....+++|.+++||+++++++.+++.+.+ +..+++.||+||++......
T Consensus       291 -----------------------------~~~~~~~l~~i~~gG~~~~~~~~~~~~~~~~~~~~~~~YG~tE~~~~~~~~  341 (533)
T PRK07798        291 -----------------------------GPYDLSSLFAIASGGALFSPSVKEALLELLPNVVLTDSIGSSETGFGGSGT  341 (533)
T ss_pred             -----------------------------ccCCCCceEEEEECCCCCCHHHHHHHHHHcCCCeEEeeecccccccccccC
Confidence                                         001124899999999999999999999888 78999999999997665544


Q ss_pred             cCCCccccCccC--CCccCeeEEeeecCCCCCCCCCCCCCceEEEccCCcccccCCCchhhhhccc--C--CccccCceE
Q 006111          428 FPDEMCMVGTAG--PVSVYSELRLEEVPEMGYSPLDDPPCGEVCVRGKTLFSGYYKNPDLTRESII--D--GWFHTGDIG  501 (660)
Q Consensus       428 ~~~~~~~~~~~G--~~~~~~~v~ivd~~~~~~~~~~~~~~Gei~v~g~~~~~gy~~~~~~~~~~~~--~--g~~~TGDl~  501 (660)
                      .....   ...|  .+.++..+++++ +++...+.+....|+|+ +++.++.||++++..+.+.|.  +  +||+|||+|
T Consensus       342 ~~~~~---~~~g~~~~~~~~~~~i~~-~~~~~~~~g~~~~g~l~-~~~~~~~gy~~~~~~t~~~f~~~~~~~~~~TGD~~  416 (533)
T PRK07798        342 VAKGA---VHTGGPRFTIGPRTVVLD-EDGNPVEPGSGEIGWIA-RRGHIPLGYYKDPEKTAETFPTIDGVRYAIPGDRA  416 (533)
T ss_pred             CCCCC---ccCCCCccCCCceEEEEC-CCCCCCCCCCCCeeEEE-eecCccccccCChhhhHHhhccCCCCceEEcCcEE
Confidence            32222   2233  788899999999 77765544432226665 566899999999999988883  3  599999999


Q ss_pred             EECCCCcEEEEeccCCeeEcCCCeeecchhHHHHHhcCcCcceEEEEecCCC---CeEEEEEEcChhhHHHHHHHCCCCC
Q 006111          502 QILPNGVVKIIDRKKNLIKISQGEYVALEYLENVYCVAPIIEDIWVYGDSLK---SMLVAVVVPCEEDTKKWAYSNGHAG  578 (660)
Q Consensus       502 ~~~~~G~l~~~GR~~d~i~~~~G~~v~~~~iE~~l~~~p~V~~~~V~~~~~~---~~~~a~v~~~~~~~~~~~~~~~~~~  578 (660)
                      ++|++|.+++.||.+|+|+. +|++|+|.+||++|.++|.|.+|+|++.++.   +.+++++++.++..          .
T Consensus       417 ~~~~~g~l~~~GR~~~~i~~-~G~~v~~~eIE~~l~~~~~v~~~~v~~~~~~~~~~~~~~~v~~~~~~~----------~  485 (533)
T PRK07798        417 RVEADGTITLLGRGSVCINT-GGEKVFPEEVEEALKAHPDVADALVVGVPDERWGQEVVAVVQLREGAR----------P  485 (533)
T ss_pred             EEcCCCcEEEEccccceEec-CCEEeCHHHHHHHHHhCccceeEEEEeccCcccCceEEEEEEECCCCC----------C
Confidence            99999999999999999996 8999999999999999999999999987644   47888888775420          0


Q ss_pred             cHHHHhccHHHHHHHHHHHHHHHHhCCCCCceeeeEEEEecCCCCCCCCccccccccchHHHHHHHHH
Q 006111          579 SFLELCSLVQLQNYILSELKNAAERNKLRGFEHIKGVILDPRPFDMERDLVTATLKKKRNKLLIYYQV  646 (660)
Q Consensus       579 ~~~~~~~~~~~~~~~~~~l~~~~~~~~l~~~~~p~~i~~~~~~~~~~~~P~t~~GKv~R~~l~~~~~~  646 (660)
                            .        .++|+++++ .+|+.|.+|..+++++      .+|+|++||++|+.|+++.++
T Consensus       486 ------~--------~~~l~~~l~-~~l~~~~~P~~i~~~~------~iP~t~~GK~~~~~~~~~~~~  532 (533)
T PRK07798        486 ------D--------LAELRAHCR-SSLAGYKVPRAIWFVD------EVQRSPAGKADYRWAKEQAAE  532 (533)
T ss_pred             ------C--------HHHHHHHHh-hhcccCCCCeEEEEcc------cCCCCCcchhhHHHHhhhhcc
Confidence                  1        123444443 6789999999998864      468999999999999998765

>PLN03051 acyl-activating enzyme; Provisional

Probab=100.00  E-value=4.6e-58  Score=501.56  Aligned_cols=458  Identities=18%  Similarity=0.140  Sum_probs=334.2

Q ss_pred             eCCchhHHHHHHHHHhCCCeEEecCCCCChhHHHHHHhcccceEEEEccchh------hhhhccccccccCccEEEEecC
Q 006111          108 GANCPQWVEAMEACNALSLICVPLYDTLGPGAVNFILDHAEIDFVFVQDKKV------KELLSPDCRSAQRLRVMVCFTS  181 (660)
Q Consensus       108 ~~n~~e~~~~~lA~~~~G~~~vpl~~~~~~~~l~~~l~~~~~~~ii~~~~~~------~~~~~~~~~~~~~~~~i~~~~~  181 (660)
                      ++|++++++++|||+++|++++|+++.++.+++.++|+.++++++|+++...      ..+.+. ... .....++....
T Consensus         1 ~~n~~e~~~~~lA~~~~Gav~vpl~~~~~~~el~~~l~~~~~~~li~~~~~~~~~~~~~~~~~~-~~~-~~~~~i~~~~~   78 (499)
T PLN03051          1 MPMTVDAVIIYLAIVLAGCVVVSVADSFSAKEIATRLDISGAKGVFTQDVVLRGGRALPLYSKV-VEA-APAKAIVLPAA   78 (499)
T ss_pred             CCCcHHHHHHHHHHHHcCCEEEeeCCCCCHHHHHHHHHhcCceEEEecCceeeCCeeecchhhh-hhc-ccceEEEEecc
Confidence            5899999999999999999999999999999999999999999999986421      111111 001 11122222211


Q ss_pred             CcHHHHHHHhhCCcceeeHHHHHhcCcc------CCccCCCCCCCceEEEEecCCCCCCCceeeecchhHHHHhhhhhhh
Q 006111          182 LTAEQKEMAVQTGIKPYSWDEFLHLGKV------NEMEILPPQPFNICTIMYTSGTSGDPKGVVLTHETIATFVSGVDLF  255 (660)
Q Consensus       182 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~~~~~~i~~TSGTTG~pK~v~~th~~l~~~~~~~~~~  255 (660)
                      ....    .........+|.++......      .........++++++|+|||||||.||+|++||++++..+......
T Consensus        79 ~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~a~i~yTSGTTG~PKgV~~sh~~~~~~~~~~~~~  154 (499)
T PLN03051         79 GEPV----AVPLREQDLSWCDFLGVAAAQGSVGGNEYSPVYAPVESVTNILFSSGTTGEPKAIPWTHLSPLRCASDGWAH  154 (499)
T ss_pred             Cccc----CCccccCcccHHHHHhhhccccccccccCCcccCCccceEEEEeCCCCCCCCceEEEccchHHHHHHHHHHh
Confidence            1000    00000012245555422110      0111112356899999999999999999999999987765544444


Q ss_pred             cccccCCCCCCcEEEEecChhHHHHHHHHHHHhhcCcEEEEecC--ChhhHHHHhhhhcCeEEEechHHHHHHHHHHHHH
Q 006111          256 LDQFEDKMTVDDVYLSFLPLAHILDRVIEEYFFRRGASVGYYHG--DLNALRDDLMELKPTLLAGVPRVFEKIHEGIKKA  333 (660)
Q Consensus       256 ~~~~~~~~~~~~~~l~~~pl~~~~g~~~~l~~l~~G~~~v~~~~--~~~~~~~~i~~~~~t~~~~~p~~~~~l~~~~~~~  333 (660)
                      +     ++..+|++++.+|++|..++...+.+++.|+++++.+.  ++..+++.|+++++|+++++|+++..|.+.....
T Consensus       155 ~-----~~~~~d~~l~~~pl~h~~g~~~~~~~l~~G~t~v~~~~~~~~~~~~~~i~~~~vt~~~~vP~~~~~l~~~~~~~  229 (499)
T PLN03051        155 M-----DIQPGDVVCWPTNLGWMMGPWLLYSAFLNGATLALYGGAPLGRGFGKFVQDAGVTVLGLVPSIVKAWRHTGAFA  229 (499)
T ss_pred             c-----CCCCCCEEEEccCcceeeehHHHHHHHHcCCEEEecCCCCCcHHHHHHHHHhCCcEEEeCHHHHHHHHhcCccc
Confidence            4     67889999999999999887767778999999998863  7889999999999999999999999886421000


Q ss_pred             HHhhchHHHHHHHHHHHHHHHHHhhCCCCCCcchhhhHHHHHHHHHHhCCcEeEEEEccCCCCHHHHHHHHHhc--CCce
Q 006111          334 LEELRPLRRRIFDALYKYKLAWMNMGYKQREASPLADLLAFRKVKARLGGRLRLVISGGAPLSTEVEEFLRVTC--CAFL  411 (660)
Q Consensus       334 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lr~i~~~G~~l~~~~~~~~~~~~--~~~v  411 (660)
                                                         ....++        ++||.+++||+++++++.+++++.+  ++++
T Consensus       230 -----------------------------------~~~~~~--------~~Lr~i~~gG~~~~~~~~~~~~~~~~~~~~~  266 (499)
T PLN03051        230 -----------------------------------MEGLDW--------SKLRVFASTGEASAVDDVLWLSSVRGYYKPV  266 (499)
T ss_pred             -----------------------------------cccCCc--------hhheEEEecCCCCCHHHHHHHHHhcccccee
Confidence                                               000111        3899999999999999998887633  4789


Q ss_pred             eeecCCCCCCCceecccCCCccccCccCCCccCeeEEeeecCCCCCCCCCCCCCceEEEccCCc--ccccCCCchhhhhc
Q 006111          412 VQGYGLTETCGPTTVCFPDEMCMVGTAGPVSVYSELRLEEVPEMGYSPLDDPPCGEVCVRGKTL--FSGYYKNPDLTRES  489 (660)
Q Consensus       412 ~~~YG~tE~~~~~~~~~~~~~~~~~~~G~~~~~~~v~ivd~~~~~~~~~~~~~~Gei~v~g~~~--~~gy~~~~~~~~~~  489 (660)
                      ++.||+||++..+...........+++|.|.++++++|+| +++..++.+.++.|||+++||.+  +.||++++. + +.
T Consensus       267 ~~~YG~TE~~~~~~~~~~~~~~~~~~~G~p~~~~~~~ivd-~~g~~~~~g~~~~Gel~v~g~~~~~~~gy~~~~~-~-~~  343 (499)
T PLN03051        267 IEYCGGTELASGYISSTLLQPQAPGAFSTASLGTRFVLLN-DNGVPYPDDQPCVGEVALAPPMLGASDRLLNADH-D-KV  343 (499)
T ss_pred             EeeeccccccceeecccccCCCCCccccCCCCCceEEEEC-CCCCCCCCCCCcceEEEEecCcCCCCccccCCcc-c-ce
Confidence            9999999987544332222223347899999999999999 77776655544689999999976  589998653 3 33


Q ss_pred             ccCC----------ccccCceEEECCCCcEEEEeccCCeeEcCCCeeecchhHHHHHhc-CcCcceEEEEecCCC----C
Q 006111          490 IIDG----------WFHTGDIGQILPNGVVKIIDRKKNLIKISQGEYVALEYLENVYCV-APIIEDIWVYGDSLK----S  554 (660)
Q Consensus       490 ~~~g----------~~~TGDl~~~~~~G~l~~~GR~~d~i~~~~G~~v~~~~iE~~l~~-~p~V~~~~V~~~~~~----~  554 (660)
                      |.+|          ||+|||+|++|+||+|+++||.||+||+ +|++|+|.|||++|.+ ||+|.+|+|++.+++    +
T Consensus       344 ~~~g~~~~~~~~~~~~~TGDlg~~d~dG~l~~~gR~~d~ik~-~G~~v~p~EIE~~l~~~~p~V~~aavvg~~d~~~g~~  422 (499)
T PLN03051        344 YYKGMPMYGSKGMPLRRHGDIMKRTPGGYFCVQGRADDTMNL-GGIKTSSVEIERACDRAVAGIAETAAVGVAPPDGGPE  422 (499)
T ss_pred             eeecCCccccCCcceeecCCeEEECCCCcEEEEeccCCEEee-CCEECCHHHHHHHHHhcCCCcceEEEEEecCCCCCce
Confidence            4344          6899999999999999999999999996 8999999999999986 999999999997754    3


Q ss_pred             eEEEEE---EcChhhHHHHHHHCCCCCcHHHHhccHHHHHHHHHHHHHHHHhCCCCCceeeeEEEEecCCCCCCCCcccc
Q 006111          555 MLVAVV---VPCEEDTKKWAYSNGHAGSFLELCSLVQLQNYILSELKNAAERNKLRGFEHIKGVILDPRPFDMERDLVTA  631 (660)
Q Consensus       555 ~~~a~v---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~l~~~~~p~~i~~~~~~~~~~~~P~t~  631 (660)
                      .++|+|   +++++..       ..        ...++.+    .++++++ .+|+.|..|..|.++      +.+|+|+
T Consensus       423 ~~~a~v~~~v~~~~~~-------~~--------~~~~l~~----~~~~~l~-~~l~~~~~~~~i~~v------~~lP~t~  476 (499)
T PLN03051        423 LLVIFLVLGEEKKGFD-------QA--------RPEALQK----KFQEAIQ-TNLNPLFKVSRVKIV------PELPRNA  476 (499)
T ss_pred             EEEEEEEcceeccccc-------cc--------chHHHHH----HHHHHHH-hhcCCccCCceEEEc------CCCCCCC
Confidence            688888   6655320       00        1223333    3334433 568876666677776      4469999


Q ss_pred             ccccchHHHHHHHHHHHH
Q 006111          632 TLKKKRNKLLIYYQVEID  649 (660)
Q Consensus       632 ~GKv~R~~l~~~~~~~i~  649 (660)
                      +||++|++|++.+.+++.
T Consensus       477 ~GKi~r~~L~~~~~~~~~  494 (499)
T PLN03051        477 SNKLLRRVLRDQLKKELS  494 (499)
T ss_pred             CccHHHHHHHHHHHHhhc
Confidence            999999999998877654

>PRK08276 long-chain-fatty-acid--CoA ligase; Validated

Probab=100.00  E-value=5e-57  Score=495.35  Aligned_cols=482  Identities=21%  Similarity=0.234  Sum_probs=380.8

Q ss_pred             eEEeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEeCCchhHHHHHHHHHhCCCeEEecCCCCChhHHHHHHhcccceEEEE
Q 006111           75 VWKTYKEVYEEVLQIVSALRASGAEPGCRVGIYGANCPQWVEAMEACNALSLICVPLYDTLGPGAVNFILDHAEIDFVFV  154 (660)
Q Consensus        75 ~~~Ty~ql~~~v~~lA~~L~~~Gl~~gd~V~l~~~n~~e~~~~~lA~~~~G~~~vpl~~~~~~~~l~~~l~~~~~~~ii~  154 (660)
                      +.+||.||.+.++++|++|.+.|+++||+|+++++|++++++++|||+++|++++|+++.++.+++..+++.++++++++
T Consensus        10 ~~~ty~el~~~v~~~a~~L~~~g~~~~~~V~i~~~~~~~~~~~~la~~~~G~~~~~l~~~~~~~~~~~~~~~~~~~~ii~   89 (502)
T PRK08276         10 EVVTYGELEARSNRLAHGLRALGLREGDVVAILLENNPEFFEVYWAARRSGLYYTPINWHLTAAEIAYIVDDSGAKVLIV   89 (502)
T ss_pred             cEEEHHHHHHHHHHHHHHHHHhCCCCCCEEEEEeCCCHHHHHHHHHHHhcCcEEEecccccCHHHHHHHHhcCCCCEEEE
Confidence            68999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             ccchhhhhhcccccccc-CccEEEEecCCcHHHHHHHhhCCcceeeHHHHHhcCccCCccCCCCCCCceEEEEecCCCCC
Q 006111          155 QDKKVKELLSPDCRSAQ-RLRVMVCFTSLTAEQKEMAVQTGIKPYSWDEFLHLGKVNEMEILPPQPFNICTIMYTSGTSG  233 (660)
Q Consensus       155 ~~~~~~~~~~~~~~~~~-~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~TSGTTG  233 (660)
                      ++.....+.+... ... ....++......           .....|.+......    .......++.++++|||||||
T Consensus        90 ~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~-----------~~~~~~~~~~~~~~----~~~~~~~~~~a~i~~TSGtTG  153 (502)
T PRK08276         90 SAALADTAAELAA-ELPAGVPLLLVVAGPV-----------PGFRSYEEALAAQP----DTPIADETAGADMLYSSGTTG  153 (502)
T ss_pred             ccchhhHHHHHhh-hccccccEEEEeCCCC-----------CccccHHHHHhcCC----CCCCCCCCcceEEEECCCCCC
Confidence            9876655432221 112 334444432111           11223444433211    112235567899999999999


Q ss_pred             CCceeeecchhHHHHhh--hhhhhcccccCCCCCCcEEEEecChhHHHHHHHHHHHhhcCcEEEEecC-ChhhHHHHhhh
Q 006111          234 DPKGVVLTHETIATFVS--GVDLFLDQFEDKMTVDDVYLSFLPLAHILDRVIEEYFFRRGASVGYYHG-DLNALRDDLME  310 (660)
Q Consensus       234 ~pK~v~~th~~l~~~~~--~~~~~~~~~~~~~~~~~~~l~~~pl~~~~g~~~~l~~l~~G~~~v~~~~-~~~~~~~~i~~  310 (660)
                      .||+|.++|.++.....  ....... .......++++++..|++|..++...+.++..|+++++.+. ++..+++.+++
T Consensus       154 ~PK~v~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~l~~~p~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~i~~  232 (502)
T PRK08276        154 RPKGIKRPLPGLDPDEAPGMMLALLG-FGMYGGPDSVYLSPAPLYHTAPLRFGMSALALGGTVVVMEKFDAEEALALIER  232 (502)
T ss_pred             CCceEEEccCCcchhhhhHHhhhhhh-hcccCCCCCEEEEcCcHHHHHHHHHHHHHHhccceEEEcCCCCHHHHHHHHHH
Confidence            99999999887654332  1111110 01123577899999999999998887788999999988875 89999999999


Q ss_pred             hcCeEEEechHHHHHHHHHHHHHHHhhchHHHHHHHHHHHHHHHHHhhCCCCCCcchhhhHHHHHHHHHHhCCcEeEEEE
Q 006111          311 LKPTLLAGVPRVFEKIHEGIKKALEELRPLRRRIFDALYKYKLAWMNMGYKQREASPLADLLAFRKVKARLGGRLRLVIS  390 (660)
Q Consensus       311 ~~~t~~~~~p~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lr~i~~  390 (660)
                      +++|+++++|+++..+.+.....                                   ...+++        +++|.+++
T Consensus       233 ~~~t~~~~~P~~~~~l~~~~~~~-----------------------------------~~~~~~--------~~lr~i~~  269 (502)
T PRK08276        233 YRVTHSQLVPTMFVRMLKLPEEV-----------------------------------RARYDV--------SSLRVAIH  269 (502)
T ss_pred             hCCeEEEehHHHHHHHHhCcccc-----------------------------------CCCCCc--------ccceEEEe
Confidence            99999999999998886431110                                   011112        38999999


Q ss_pred             ccCCCCHHHHHHHHHhcCCceeeecCCCCCCCceecccCCCccccCccCCCccCeeEEeeecCCCCCCCCCCCCCceEEE
Q 006111          391 GGAPLSTEVEEFLRVTCCAFLVQGYGLTETCGPTTVCFPDEMCMVGTAGPVSVYSELRLEEVPEMGYSPLDDPPCGEVCV  470 (660)
Q Consensus       391 ~G~~l~~~~~~~~~~~~~~~v~~~YG~tE~~~~~~~~~~~~~~~~~~~G~~~~~~~v~ivd~~~~~~~~~~~~~~Gei~v  470 (660)
                      +|++++.++.+++.+.++..+++.||+||++.+++..........+++|.|+ ++.++++| +++.  +++.|+.|||++
T Consensus       270 ~g~~~~~~~~~~~~~~~~~~~~~~yG~tE~~~~~~~~~~~~~~~~~~~G~~~-~~~~~i~d-~~~~--~~~~g~~Gel~v  345 (502)
T PRK08276        270 AAAPCPVEVKRAMIDWWGPIIHEYYASSEGGGVTVITSEDWLAHPGSVGKAV-LGEVRILD-EDGN--ELPPGEIGTVYF  345 (502)
T ss_pred             cCCCCCHHHHHHHHHHhCcHhhhhcccccccceeEecCccccccCCCcceec-ccEEEEEC-CCCC--CCcCCCceEEEE
Confidence            9999999999999998899999999999999876655444334457899999 88999998 6655  444568999999


Q ss_pred             ccCCcccccCCCchhhhhcc-cCCccccCceEEECCCCcEEEEeccCCeeEcCCCeeecchhHHHHHhcCcCcceEEEEe
Q 006111          471 RGKTLFSGYYKNPDLTRESI-IDGWFHTGDIGQILPNGVVKIIDRKKNLIKISQGEYVALEYLENVYCVAPIIEDIWVYG  549 (660)
Q Consensus       471 ~g~~~~~gy~~~~~~~~~~~-~~g~~~TGDl~~~~~~G~l~~~GR~~d~i~~~~G~~v~~~~iE~~l~~~p~V~~~~V~~  549 (660)
                      +|+.++.||++++..+...+ .+|||+|||+|+++++|.+++.||.+|+|++ +|.+|++.+||.+|.+||+|.+|+|++
T Consensus       346 ~~~~~~~gy~~~~~~~~~~~~~~~~~~TGD~~~~~~~g~~~~~GR~~~~i~~-~G~~v~~~~iE~~i~~~~~v~~~~v~~  424 (502)
T PRK08276        346 EMDGYPFEYHNDPEKTAAARNPHGWVTVGDVGYLDEDGYLYLTDRKSDMIIS-GGVNIYPQEIENLLVTHPKVADVAVFG  424 (502)
T ss_pred             ECCCccchhcCCHHHHHHHhcCCCceeecceEEEcCCcCEEEeccCcceEEe-CCEEeCHHHHHHHHHhCCCcceEEEEe
Confidence            99999999999999999988 4599999999999999999999999999996 899999999999999999999999998


Q ss_pred             cCCC---CeEEEEEEcChhhHHHHHHHCCCCCcHHHHhccHHHHHHHHHHHHHHHHhCCCCCceeeeEEEEecCCCCCCC
Q 006111          550 DSLK---SMLVAVVVPCEEDTKKWAYSNGHAGSFLELCSLVQLQNYILSELKNAAERNKLRGFEHIKGVILDPRPFDMER  626 (660)
Q Consensus       550 ~~~~---~~~~a~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~l~~~~~p~~i~~~~~~~~~~~  626 (660)
                      ..++   +.++++|++.++..                 ...++.    +.+.+.++ .+|+.|+.|..+++++.      
T Consensus       425 ~~~~~~~~~~~~~v~~~~~~~-----------------~~~~~~----~~i~~~~~-~~l~~~~~p~~i~~~~~------  476 (502)
T PRK08276        425 VPDEEMGERVKAVVQPADGAD-----------------AGDALA----AELIAWLR-GRLAHYKCPRSIDFEDE------  476 (502)
T ss_pred             CCCcccCceEEEEEEECCCCC-----------------CChhhH----HHHHHHHH-hhccCCCCCcEEEEecC------
Confidence            7654   48999999876430                 112222    23444443 67899999999998744      


Q ss_pred             CccccccccchHHHHHHHHHHHH
Q 006111          627 DLVTATLKKKRNKLLIYYQVEID  649 (660)
Q Consensus       627 ~P~t~~GKv~R~~l~~~~~~~i~  649 (660)
                      +|+|++||++|++|++.|...-+
T Consensus       477 lP~t~~GKi~r~~L~~~~~~~~~  499 (502)
T PRK08276        477 LPRTPTGKLYKRRLRDRYWEGRQ  499 (502)
T ss_pred             CCCCcccchhHHHHHHHHHhhhh
Confidence            58999999999999999866543

>PRK05850 acyl-CoA synthetase; Validated

Probab=100.00  E-value=4.2e-57  Score=504.24  Aligned_cols=516  Identities=17%  Similarity=0.195  Sum_probs=372.9

Q ss_pred             cHHHHHHHHHHhCCCCCceeeeccccCC---CCCceEEeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEeCCchhHHHHHH
Q 006111           43 TAWDIFSMSVQKYPGNRMLGWRPFVDGK---FGPYVWKTYKEVYEEVLQIVSALRASGAEPGCRVGIYGANCPQWVEAME  119 (660)
Q Consensus        43 ti~~~l~~~a~~~pd~~a~~~~~~~d~~---~~~~~~~Ty~ql~~~v~~lA~~L~~~Gl~~gd~V~l~~~n~~e~~~~~l  119 (660)
                      ++.++|++++..+|+++|+++.   +..   .+..+++||.||.+++.++|++|.+.| .+||+|+++++|++++++++|
T Consensus         2 s~~~~l~~~a~~~p~~~a~~~~---~~~~~~~~~~~~lty~eL~~~v~~~A~~L~~~g-~~gd~V~l~~~n~~~~~~~~l   77 (578)
T PRK05850          2 SVPSLLRERASLQPDDAAFTFI---DYEQDPAGVAETLTWSQLYRRTLNVAEELRRHG-STGDRAVILAPQGLEYIVAFL   77 (578)
T ss_pred             cHHHHHHHHHhcCCCceEEEEE---ccCCCCCCceeeecHHHHHHHHHHHHHHHHHhC-CCCCEEEEEcCCcccHHHHHH
Confidence            6889999999999999999875   311   122468999999999999999999999 689999999999999999999


Q ss_pred             HHHhCCCeEEecCC---CCChhHHHHHHhcccceEEEEccchhhhhhcccccc-ccCccEEEEecCCcHHHHHHHhhCCc
Q 006111          120 ACNALSLICVPLYD---TLGPGAVNFILDHAEIDFVFVQDKKVKELLSPDCRS-AQRLRVMVCFTSLTAEQKEMAVQTGI  195 (660)
Q Consensus       120 A~~~~G~~~vpl~~---~~~~~~l~~~l~~~~~~~ii~~~~~~~~~~~~~~~~-~~~~~~i~~~~~~~~~~~~~~~~~~~  195 (660)
                      ||+++|++++|+++   ..+.+++.++|+.++++++++++.....+.+..... ......++..+..             
T Consensus        78 A~~~~G~v~vpl~~~~~~~~~~~l~~~l~~~~~~~il~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------------  144 (578)
T PRK05850         78 GALQAGLIAVPLSVPQGGAHDERVSAVLRDTSPSVVLTTSAVVDDVTEYVAPQPGQSAPPVIEVDLL-------------  144 (578)
T ss_pred             HHHHcCceEEecCCCCccchHHHHHHHHHhcCCCEEEEcHHHHHHHHHHHhhcccccccceEeeccc-------------
Confidence            99999999999997   457889999999999999999987665543211100 0011112221110             


Q ss_pred             ceeeHHHHHhcCccCCccCCCCCCCceEEEEecCCCCCCCceeeecchhHHHHhhhhhhh-cccccCCCCCCcEEEEecC
Q 006111          196 KPYSWDEFLHLGKVNEMEILPPQPFNICTIMYTSGTSGDPKGVVLTHETIATFVSGVDLF-LDQFEDKMTVDDVYLSFLP  274 (660)
Q Consensus       196 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~TSGTTG~pK~v~~th~~l~~~~~~~~~~-~~~~~~~~~~~~~~l~~~p  274 (660)
                            ++..   ..........++++++++|||||||.||+|.++|+++++.+...... +.........++++++++|
T Consensus       145 ------~~~~---~~~~~~~~~~~~d~a~i~~TSGTTG~PKgV~~sh~~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~p  215 (578)
T PRK05850        145 ------DLDS---PRGSDARPRDLPSTAYLQYTSGSTRTPAGVMVSHRNVIANFEQLMSDYFGDTGGVPPPDTTVVSWLP  215 (578)
T ss_pred             ------cccc---CCccccCCCCCCCeEEEEeCCCCCCCCceEEEeHHHHHHHHHHHHHhhccccccCCCCcceEEEECC
Confidence                  0000   00011223467899999999999999999999999998877654332 1111111456789999999


Q ss_pred             hhHHHHHHH-HHHHhhcCcEEEEecC-----ChhhHHHHhhhhcCeEEEechHHH-HHHHHHHHHHHHhhchHHHHHHHH
Q 006111          275 LAHILDRVI-EEYFFRRGASVGYYHG-----DLNALRDDLMELKPTLLAGVPRVF-EKIHEGIKKALEELRPLRRRIFDA  347 (660)
Q Consensus       275 l~~~~g~~~-~l~~l~~G~~~v~~~~-----~~~~~~~~i~~~~~t~~~~~p~~~-~~l~~~~~~~~~~~~~~~~~~~~~  347 (660)
                      ++|.+|+.. .+.+++.|+++++.+.     ++..+++.+.+++++++ .+|..+ ..+.......              
T Consensus       216 l~h~~g~~~~~~~~l~~G~~~~~~~~~~~~~~p~~~~~~i~~~~~~~~-~~p~~~~~~~~~~~~~~--------------  280 (578)
T PRK05850        216 FYHDMGLVLGVCAPILGGCPAVLTSPVAFLQRPARWMQLLASNPHAFS-AAPNFAFELAVRKTSDD--------------  280 (578)
T ss_pred             CCCCchhHHHHHHHHhcCCcEEEeCHHHHHHCHHHHHHHHHHcCCeEE-eCCcHHHHHHHHhcchh--------------
Confidence            999999876 6778999999998863     68999999999999865 455544 3332211000              


Q ss_pred             HHHHHHHHHhhCCCCCCcchhhhHHHHHHHHHHhCCcEeEEEEccCCCCHHHHHHHHHhcC------CceeeecCCCCCC
Q 006111          348 LYKYKLAWMNMGYKQREASPLADLLAFRKVKARLGGRLRLVISGGAPLSTEVEEFLRVTCC------AFLVQGYGLTETC  421 (660)
Q Consensus       348 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lr~i~~~G~~l~~~~~~~~~~~~~------~~v~~~YG~tE~~  421 (660)
                                          .....++        +++|.+++||+++++++.++|.+.++      ..+++.||+||++
T Consensus       281 --------------------~~~~~~~--------~~lr~~~~gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~YG~tE~~  332 (578)
T PRK05850        281 --------------------DMAGLDL--------GGVLGIISGSERVHPATLKRFADRFAPFNLRETAIRPSYGLAEAT  332 (578)
T ss_pred             --------------------hhcCcch--------hhheeEEECcCCCCHHHHHHHHHHHHhcCcCcccccCccchhhhh
Confidence                                0000111        38999999999999999999888762      3689999999987


Q ss_pred             CceecccCCCc------------------------cccCccCCCccCeeEEeeecCCCCCCCCCCCCCceEEEccCCccc
Q 006111          422 GPTTVCFPDEM------------------------CMVGTAGPVSVYSELRLEEVPEMGYSPLDDPPCGEVCVRGKTLFS  477 (660)
Q Consensus       422 ~~~~~~~~~~~------------------------~~~~~~G~~~~~~~v~ivd~~~~~~~~~~~~~~Gei~v~g~~~~~  477 (660)
                      ..+........                        ....++|.|. +.+++++| ++++ .+++.|+.|||||+|+.++.
T Consensus       333 ~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~g~~~~~~g~p~-~~~~~ivd-~~~~-~~~~~g~~Gel~v~g~~~~~  409 (578)
T PRK05850        333 VYVATREPGQPPESVRFDYEKLSAGHAKRCETGGGTPLVSYGSPR-SPTVRIVD-PDTC-IECPAGTVGEIWVHGDNVAA  409 (578)
T ss_pred             hheeccCCCCCceEEEECHHHHhCCceEecCCCCCceEEeccCCC-CCEEEEEc-CCCC-cCCCCCCEEEEEEecCcccc
Confidence            65443221100                        0011334443 57899998 5433 34566789999999999999


Q ss_pred             ccCCCchhhhhccc------------CCccccCceEEECCCCcEEEEeccCCeeEcCCCeeecchhHHHHHhcCcCcceE
Q 006111          478 GYYKNPDLTRESII------------DGWFHTGDIGQILPNGVVKIIDRKKNLIKISQGEYVALEYLENVYCVAPIIEDI  545 (660)
Q Consensus       478 gy~~~~~~~~~~~~------------~g~~~TGDl~~~~~~G~l~~~GR~~d~i~~~~G~~v~~~~iE~~l~~~p~V~~~  545 (660)
                      ||+++++.+.+.|.            +|||+|||+|+++ +|+|+++||.+|+|++ +|++|+|.+||++|.+||.+ +|
T Consensus       410 gY~~~~~~t~~~f~~~~~~~~~~~~~~~w~~TGDl~~~~-~G~l~~~GR~~d~i~~-~G~~i~p~eIE~~l~~~~~~-~~  486 (578)
T PRK05850        410 GYWQKPEETERTFGATLVDPSPGTPEGPWLRTGDLGFIS-EGELFIVGRIKDLLIV-DGRNHYPDDIEATIQEITGG-RV  486 (578)
T ss_pred             cccCChhhhHHHhhcccccccccCCCCCeeeccceeeEE-CCEEEEEcccccEEEE-CCeecCHHHHHHHHHHhcCC-cE
Confidence            99999999998883            4799999999997 9999999999999997 89999999999999999985 47


Q ss_pred             EEEecCCC--CeEEEEEEcChhhHHHHHHHCCCCCcHHHHhccHHHHHHHHHHHHHHHHhCCCCCceeeeEEEEecCCCC
Q 006111          546 WVYGDSLK--SMLVAVVVPCEEDTKKWAYSNGHAGSFLELCSLVQLQNYILSELKNAAERNKLRGFEHIKGVILDPRPFD  623 (660)
Q Consensus       546 ~V~~~~~~--~~~~a~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~l~~~~~p~~i~~~~~~~~  623 (660)
                      +|++.++.  +.++|+|++++...        ...      ........+++++.+.+. ..  .+..|..+.+++    
T Consensus       487 ~v~~v~~~~~~~~~a~v~~~~~~~--------~~~------~~~~~~~~l~~~v~~~l~-~~--~~~~~~~~~~~~----  545 (578)
T PRK05850        487 AAISVPDDGTEKLVAIIELKKRGD--------SDE------EAMDRLRTVKREVTSAIS-KS--HGLSVADLVLVA----  545 (578)
T ss_pred             EEEEecCCCceEEEEEEEeccccC--------cch------hhhhhHHHHHHHHHHHHH-HH--hCCCceEEEEeC----
Confidence            77776644  47899998876421        000      001123444555544333 11  123466666663    


Q ss_pred             CCCCccccccccchHHHHHHHHHHHHHHHhhhcC
Q 006111          624 MERDLVTATLKKKRNKLLIYYQVEIDQLYEKLAP  657 (660)
Q Consensus       624 ~~~~P~t~~GKv~R~~l~~~~~~~i~~~y~~~~~  657 (660)
                      .+.||+|++||++|++|+++|.+.   .|.+++.
T Consensus       546 ~~~iP~t~~GKi~R~~l~~~~~~~---~~~~~~~  576 (578)
T PRK05850        546 PGSIPITTSGKIRRAACVEQYRQD---EFTRLDA  576 (578)
T ss_pred             CCCcCCCCCchHHHHHHHHHHHcC---CcccccC
Confidence            256799999999999999998653   4665543

>PRK05691 peptide synthase; Validated

Probab=100.00  E-value=1e-57  Score=596.93  Aligned_cols=483  Identities=20%  Similarity=0.210  Sum_probs=398.2

Q ss_pred             CCCCCcHHHHHHHHHHhCCCCCceeeeccccCCCCCceEEeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEeCCchhHHHH
Q 006111           38 DSDLNTAWDIFSMSVQKYPGNRMLGWRPFVDGKFGPYVWKTYKEVYEEVLQIVSALRASGAEPGCRVGIYGANCPQWVEA  117 (660)
Q Consensus        38 ~~~~~ti~~~l~~~a~~~pd~~a~~~~~~~d~~~~~~~~~Ty~ql~~~v~~lA~~L~~~Gl~~gd~V~l~~~n~~e~~~~  117 (660)
                      +....++.++|+++++++|+++|+++.   +      .++||+||.++++++|++|.+.|+++|++|+++++++++++++
T Consensus      1127 ~~~~~~l~~~~~~~a~~~p~~~Al~~~---~------~~lTY~eL~~~~~~lA~~L~~~gv~~g~~V~i~~~~s~~~iv~ 1197 (4334)
T PRK05691       1127 APAQAWLPELLNEQARQTPERIALVWD---G------GSLDYAELHAQANRLAHYLRDKGVGPDVCVAIAAERSPQLLVG 1197 (4334)
T ss_pred             CCccCCHHHHHHHHHHhCCCCeEEEEC---C------ceEeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEeCCCHHHHHH
Confidence            344578999999999999999999876   4      3799999999999999999999999999999999999999999


Q ss_pred             HHHHHhCCCeEEecCCCCChhHHHHHHhcccceEEEEccchhhhhhccccccccCccEEEEecCCcHHHHHHHhhCCcce
Q 006111          118 MEACNALSLICVPLYDTLGPGAVNFILDHAEIDFVFVQDKKVKELLSPDCRSAQRLRVMVCFTSLTAEQKEMAVQTGIKP  197 (660)
Q Consensus       118 ~lA~~~~G~~~vpl~~~~~~~~l~~~l~~~~~~~ii~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~  197 (660)
                      +|||+++|++++|++|.++.+++..+++.++++++|++......+...     ... ..+..+...              
T Consensus      1198 ~lailkaG~~~vpld~~~p~~rl~~il~~~~~~~vi~~~~~~~~~~~~-----~~~-~~~~~~~~~-------------- 1257 (4334)
T PRK05691       1198 LLAILKAGGAYVPLDPDYPAERLAYMLADSGVELLLTQSHLLERLPQA-----EGV-SAIALDSLH-------------- 1257 (4334)
T ss_pred             HHHHHHhCCEEEecCcCChHHHHHHHHHhcCCCEEEecchhhhhcccc-----cCc-eEEeecccc--------------
Confidence            999999999999999999999999999999999999988765433111     000 111111110              


Q ss_pred             eeHHHHHhcCccCCccCCCCCCCceEEEEecCCCCCCCceeeecchhHHHHhhhhhhhcccccCCCCCCcEEEEecChhH
Q 006111          198 YSWDEFLHLGKVNEMEILPPQPFNICTIMYTSGTSGDPKGVVLTHETIATFVSGVDLFLDQFEDKMTVDDVYLSFLPLAH  277 (660)
Q Consensus       198 ~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~TSGTTG~pK~v~~th~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~pl~~  277 (660)
                        .     .......+.....++++++++|||||||.||||+++|+++.+.+......+     ++.++++++...|++|
T Consensus      1258 --~-----~~~~~~~~~~~~~~~~~a~ii~TSGSTG~PKgV~~~h~~l~~~~~~~~~~~-----~~~~~d~~l~~~~~~f 1325 (4334)
T PRK05691       1258 --L-----DSWPSQAPGLHLHGDNLAYVIYTSGSTGQPKGVGNTHAALAERLQWMQATY-----ALDDSDVLMQKAPISF 1325 (4334)
T ss_pred             --c-----cccCCCCCCCCCCCCCeEEEEEcCCCCCCCceeEeecHHHHHHHHHHHHhc-----CCCCCCEEEEeCCccH
Confidence              0     000111122234678999999999999999999999999999988877766     7899999999999999


Q ss_pred             HHHHHHHHHHhhcCcEEEEecC----ChhhHHHHhhhhcCeEEEechHHHHHHHHHHHHHHHhhchHHHHHHHHHHHHHH
Q 006111          278 ILDRVIEEYFFRRGASVGYYHG----DLNALRDDLMELKPTLLAGVPRVFEKIHEGIKKALEELRPLRRRIFDALYKYKL  353 (660)
Q Consensus       278 ~~g~~~~l~~l~~G~~~v~~~~----~~~~~~~~i~~~~~t~~~~~p~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~  353 (660)
                      ..++..++.++..|+++++.+.    ++..+++.|+++++|+++++|++++.+......                     
T Consensus      1326 d~s~~~~~~~L~~G~~l~i~~~~~~~~~~~l~~~i~~~~vt~~~~~Ps~l~~l~~~~~~--------------------- 1384 (4334)
T PRK05691       1326 DVSVWECFWPLITGCRLVLAGPGEHRDPQRIAELVQQYGVTTLHFVPPLLQLFIDEPLA--------------------- 1384 (4334)
T ss_pred             HHHHHHHHHHHhCCCEEEEcCccccCCHHHHHHHHHHcCCeEEECcHHHHHHHHhCccc---------------------
Confidence            9988888999999999999753    788999999999999999999999987542100                     


Q ss_pred             HHHhhCCCCCCcchhhhHHHHHHHHHHhCCcEeEEEEccCCCCHHHHHHHHHhc-CCceeeecCCCCCCCceecccC-CC
Q 006111          354 AWMNMGYKQREASPLADLLAFRKVKARLGGRLRLVISGGAPLSTEVEEFLRVTC-CAFLVQGYGLTETCGPTTVCFP-DE  431 (660)
Q Consensus       354 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lr~i~~~G~~l~~~~~~~~~~~~-~~~v~~~YG~tE~~~~~~~~~~-~~  431 (660)
                                                ...++||.+++||+++++++.+.|.+.+ ++.++|.||+||++..++.... ..
T Consensus      1385 --------------------------~~~~~lr~~~~gGe~l~~~~~~~~~~~~~~~~l~n~YG~TE~~~~~~~~~~~~~ 1438 (4334)
T PRK05691       1385 --------------------------AACTSLRRLFSGGEALPAELRNRVLQRLPQVQLHNRYGPTETAINVTHWQCQAE 1438 (4334)
T ss_pred             --------------------------ccCCcccEEEEeecCCCHHHHHHHHHhCCCcEEEeCCCcChheeeeeeeecccc
Confidence                                      0014899999999999999999998877 6899999999999877664322 22


Q ss_pred             ccccCccCCCccCeeEEeeecCCCCCCCCCCCCCceEEEccCCcccccCCCchhhhhcccC--------CccccCceEEE
Q 006111          432 MCMVGTAGPVSVYSELRLEEVPEMGYSPLDDPPCGEVCVRGKTLFSGYYKNPDLTRESIID--------GWFHTGDIGQI  503 (660)
Q Consensus       432 ~~~~~~~G~~~~~~~v~ivd~~~~~~~~~~~~~~Gei~v~g~~~~~gy~~~~~~~~~~~~~--------g~~~TGDl~~~  503 (660)
                      .....++|+|++++.++|+| +++..  ++.|+.|||+|+|++++.||+++++.+.+.|..        +||+|||+|++
T Consensus      1439 ~~~~~~iG~p~~~~~~~i~d-~~~~~--vp~G~~GEL~i~G~~v~~GYl~~p~~t~~~f~~~p~~~~~~r~yrTGDl~~~ 1515 (4334)
T PRK05691       1439 DGERSPIGRPLGNVLCRVLD-AELNL--LPPGVAGELCIGGAGLARGYLGRPALTAERFVPDPLGEDGARLYRTGDRARW 1515 (4334)
T ss_pred             cCCCCcccceeCCCEEEEEC-CCCCC--CCCCCceEEEecCcccchhhcCCccccHhhCCCCCCCCCCceEEEccceEEE
Confidence            23347899999999999999 66654  445689999999999999999999999998831        49999999999


Q ss_pred             CCCCcEEEEeccCCeeEcCCCeeecchhHHHHHhcCcCcceEEEEecCC--CCeEEEEEEcChhhHHHHHHHCCCCCcHH
Q 006111          504 LPNGVVKIIDRKKNLIKISQGEYVALEYLENVYCVAPIIEDIWVYGDSL--KSMLVAVVVPCEEDTKKWAYSNGHAGSFL  581 (660)
Q Consensus       504 ~~~G~l~~~GR~~d~i~~~~G~~v~~~~iE~~l~~~p~V~~~~V~~~~~--~~~~~a~v~~~~~~~~~~~~~~~~~~~~~  581 (660)
                      ++||.++++||+|++||+ +|++|+|.|||++|.+||+|.+|+|+....  ...++|+++...+..        .     
T Consensus      1516 ~~dG~l~~~GR~d~qiki-~G~rie~~eIE~~l~~~~~V~~a~v~~~~~~~~~~lva~~~~~~~~~--------~----- 1581 (4334)
T PRK05691       1516 NADGALEYLGRLDQQVKL-RGFRVEPEEIQARLLAQPGVAQAAVLVREGAAGAQLVGYYTGEAGQE--------A----- 1581 (4334)
T ss_pred             CCCCCEEEecccCcEEEE-CCEEcCHHHHHHHHHhCCCcceEEEEEeeCCCCCEEEEEEEeCCCCC--------C-----
Confidence            999999999999999998 799999999999999999999999987543  358899988765420        0     


Q ss_pred             HHhccHHHHHHHHHHHHHHHHhCCCCCceeeeEEEEecCCCCCCCCccccccccchHHHHHH
Q 006111          582 ELCSLVQLQNYILSELKNAAERNKLRGFEHIKGVILDPRPFDMERDLVTATLKKKRNKLLIY  643 (660)
Q Consensus       582 ~~~~~~~~~~~~~~~l~~~~~~~~l~~~~~p~~i~~~~~~~~~~~~P~t~~GKv~R~~l~~~  643 (660)
                         .        .++|+++++ ..||.|++|..++++      +.+|+|++||++|++|.+.
T Consensus      1582 ---~--------~~~l~~~l~-~~Lp~y~vP~~~~~~------~~lP~t~~GKidr~~L~~~ 1625 (4334)
T PRK05691       1582 ---E--------AERLKAALA-AELPEYMVPAQLIRL------DQMPLGPSGKLDRRALPEP 1625 (4334)
T ss_pred             ---C--------HHHHHHHHH-HhCccccCCcEEEEc------cccCCCCCCCcChhhcCcc
Confidence               0        124444554 789999999999986      4468999999999999653

>PRK12406 long-chain-fatty-acid--CoA ligase; Provisional

Probab=100.00  E-value=1.4e-56  Score=492.60  Aligned_cols=481  Identities=20%  Similarity=0.210  Sum_probs=376.2

Q ss_pred             eEEeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEeCCchhHHHHHHHHHhCCCeEEecCCCCChhHHHHHHhcccceEEEE
Q 006111           75 VWKTYKEVYEEVLQIVSALRASGAEPGCRVGIYGANCPQWVEAMEACNALSLICVPLYDTLGPGAVNFILDHAEIDFVFV  154 (660)
Q Consensus        75 ~~~Ty~ql~~~v~~lA~~L~~~Gl~~gd~V~l~~~n~~e~~~~~lA~~~~G~~~vpl~~~~~~~~l~~~l~~~~~~~ii~  154 (660)
                      +.+||.||.++++++|.+|.+.|+++||+|+++++|+++++++++||+++|++++|+++.++.+++..+++.++++++++
T Consensus        10 ~~~Ty~el~~~~~~la~~l~~~g~~~g~~V~v~~~~~~~~~~~~lA~~~~G~~~v~l~~~~~~~~~~~~l~~~~~~~i~~   89 (509)
T PRK12406         10 RRRSFDELAQRAARAAGGLAALGVRPGDCVALLMRNDFAFFEAAYAAMRLGAYAVPVNWHFKPEEIAYILEDSGARVLIA   89 (509)
T ss_pred             eeecHHHHHHHHHHHHHHHHHcCCCCCCEEEEEcCCCHHHHHHHHHHHHcCeEEEecCcccCHHHHHHHHhccCCcEEEE
Confidence            58999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             ccchhhhhhccccccccCccEEEEecCCcHHHHHHH-----hhCCcceeeHHHHHhcCccCCccCCCCCCCceEEEEecC
Q 006111          155 QDKKVKELLSPDCRSAQRLRVMVCFTSLTAEQKEMA-----VQTGIKPYSWDEFLHLGKVNEMEILPPQPFNICTIMYTS  229 (660)
Q Consensus       155 ~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~TS  229 (660)
                      +......+.+....    ...++.............     ........+|.++....    .......++++++++|||
T Consensus        90 ~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~a~i~~TS  161 (509)
T PRK12406         90 HADLLHGLASALPA----GVTVLSVPTPPEIAAAYRISPALLTPPAGAIDWEGWLAQQ----EPYDGPPVPQPQSMIYTS  161 (509)
T ss_pred             ccchhhhhhhhhhc----ccceeecccccccccccccccccccCCCCccCHHHHhccc----CccCCCCCCCceEEEECC
Confidence            88766544332211    111111111100000000     00011223455544322    112233568999999999


Q ss_pred             CCCCCCceeeecchhHHHH---hhhhhhhcccccCCCCCCcEEEEecChhHHHHHHHHHHHhhcCcEEEEecC-ChhhHH
Q 006111          230 GTSGDPKGVVLTHETIATF---VSGVDLFLDQFEDKMTVDDVYLSFLPLAHILDRVIEEYFFRRGASVGYYHG-DLNALR  305 (660)
Q Consensus       230 GTTG~pK~v~~th~~l~~~---~~~~~~~~~~~~~~~~~~~~~l~~~pl~~~~g~~~~l~~l~~G~~~v~~~~-~~~~~~  305 (660)
                      ||||.||+|.++|......   .......+     ++..+++++..+|++|..+....+.++..|+++++.+. ++..++
T Consensus       162 GtTG~PK~v~~s~~~~~~~~~~~~~~~~~~-----~~~~~~~~l~~~p~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~  236 (509)
T PRK12406        162 GTTGHPKGVRRAAPTPEQAAAAEQMRALIY-----GLKPGIRALLTGPLYHSAPNAYGLRAGRLGGVLVLQPRFDPEELL  236 (509)
T ss_pred             CCCCCCceEEEechhHHHHHHHHHhhhhhc-----CCCCCceEEEEeCCcccchHHHHHHHHhhheEEEEccCCCHHHHH
Confidence            9999999999877654333   33333334     67889999999999998887777777888999888776 899999


Q ss_pred             HHhhhhcCeEEEechHHHHHHHHHHHHHHHhhchHHHHHHHHHHHHHHHHHhhCCCCCCcchhhhHHHHHHHHHHhCCcE
Q 006111          306 DDLMELKPTLLAGVPRVFEKIHEGIKKALEELRPLRRRIFDALYKYKLAWMNMGYKQREASPLADLLAFRKVKARLGGRL  385 (660)
Q Consensus       306 ~~i~~~~~t~~~~~p~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l  385 (660)
                      +.++++++|+++++|.++..++.......                                   ...+        .+++
T Consensus       237 ~~l~~~~~t~~~~~P~~~~~l~~~~~~~~-----------------------------------~~~~--------~~~l  273 (509)
T PRK12406        237 QLIERHRITHMHMVPTMFIRLLKLPEEVR-----------------------------------AKYD--------VSSL  273 (509)
T ss_pred             HHHHHcCCeEEEccHHHHHHHHhCchhhc-----------------------------------ccCC--------CCce
Confidence            99999999999999999988864211100                                   0001        1489


Q ss_pred             eEEEEccCCCCHHHHHHHHHhcCCceeeecCCCCCCCceecccCCCccccCccCCCccCeeEEeeecCCCCCCCCCCCCC
Q 006111          386 RLVISGGAPLSTEVEEFLRVTCCAFLVQGYGLTETCGPTTVCFPDEMCMVGTAGPVSVYSELRLEEVPEMGYSPLDDPPC  465 (660)
Q Consensus       386 r~i~~~G~~l~~~~~~~~~~~~~~~v~~~YG~tE~~~~~~~~~~~~~~~~~~~G~~~~~~~v~ivd~~~~~~~~~~~~~~  465 (660)
                      |.+++||+++++++.+.+.+.++..+++.||+||++.+++.........++++|.++++++++++| +++..  +..++.
T Consensus       274 ~~v~~gg~~~~~~~~~~~~~~~~~~~~~~YG~tE~~~~~~~~~~~~~~~~~~~G~~~~~~~~~i~d-~~~~~--~~~g~~  350 (509)
T PRK12406        274 RHVIHAAAPCPADVKRAMIEWWGPVIYEYYGSTESGAVTFATSEDALSHPGTVGKAAPGAELRFVD-EDGRP--LPQGEI  350 (509)
T ss_pred             eEEEEcCCCCCHHHHHHHHHHcCCcEEeeccccccCceEecCcccccccCCCcCccCCCcEEEEEC-CCCCC--CCCCCc
Confidence            999999999999999999998999999999999999877655444444557899999999999999 66543  445679


Q ss_pred             ceEEEccCCccc-ccCCCchhhhhcccCCccccCceEEECCCCcEEEEeccCCeeEcCCCeeecchhHHHHHhcCcCcce
Q 006111          466 GEVCVRGKTLFS-GYYKNPDLTRESIIDGWFHTGDIGQILPNGVVKIIDRKKNLIKISQGEYVALEYLENVYCVAPIIED  544 (660)
Q Consensus       466 Gei~v~g~~~~~-gy~~~~~~~~~~~~~g~~~TGDl~~~~~~G~l~~~GR~~d~i~~~~G~~v~~~~iE~~l~~~p~V~~  544 (660)
                      |||+++|+.++. +|++++..+...+.+|||+|||+|++|++|.+++.||.+|+|++ +|.+|+|.+||+.|.++|+|.+
T Consensus       351 Gel~v~~~~~~~~~y~~~~~~~~~~~~~~~~~TGD~~~~~~~g~~~~~GR~~d~ik~-~G~~v~~~~IE~~l~~~~~v~~  429 (509)
T PRK12406        351 GEIYSRIAGNPDFTYHNKPEKRAEIDRGGFITSGDVGYLDADGYLFLCDRKRDMVIS-GGVNIYPAEIEAVLHAVPGVHD  429 (509)
T ss_pred             eEEEEECCccccccccCCchhcccccCCCCeEEccEEEEcCCceEEEeecccceEEE-CCEEECHHHHHHHHHhCCCeeE
Confidence            999999999875 89999988888788999999999999999999999999999996 8999999999999999999999


Q ss_pred             EEEEecCCC---CeEEEEEEcChhhHHHHHHHCCCCCcHHHHhccHHHHHHHHHHHHHHHHhCCCCCceeeeEEEEecCC
Q 006111          545 IWVYGDSLK---SMLVAVVVPCEEDTKKWAYSNGHAGSFLELCSLVQLQNYILSELKNAAERNKLRGFEHIKGVILDPRP  621 (660)
Q Consensus       545 ~~V~~~~~~---~~~~a~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~l~~~~~p~~i~~~~~~  621 (660)
                      |+|++.++.   +.++++|++.+..          ..      .        .+++++.++ ..+++|++|..+.++   
T Consensus       430 ~~v~~~~~~~~~~~~~~~v~~~~~~----------~~------~--------~~~l~~~l~-~~l~~~~~P~~i~~~---  481 (509)
T PRK12406        430 CAVFGIPDAEFGEALMAVVEPQPGA----------TL------D--------EADIRAQLK-ARLAGYKVPKHIEIM---  481 (509)
T ss_pred             EEEEeeeccccCceeEEEEEECCCC----------CC------C--------HHHHHHHHH-HhcccCCCCcEEEEe---
Confidence            999987654   4688888876532          00      1        123333333 678899999999886   


Q ss_pred             CCCCCCccccccccchHHHHHHHHH
Q 006111          622 FDMERDLVTATLKKKRNKLLIYYQV  646 (660)
Q Consensus       622 ~~~~~~P~t~~GKv~R~~l~~~~~~  646 (660)
                         +.+|+|++||++|++|++.|.+
T Consensus       482 ---~~iP~t~~GK~~r~~L~~~~~~  503 (509)
T PRK12406        482 ---AELPREDSGKIFKRRLRDPYWA  503 (509)
T ss_pred             ---ccCCCCCccchhHHHHHHHHHh
Confidence               4468999999999999987754

>PRK07868 acyl-CoA synthetase; Validated

Probab=100.00  E-value=1.4e-56  Score=521.64  Aligned_cols=491  Identities=15%  Similarity=0.117  Sum_probs=362.4

Q ss_pred             CCCCcHHHHHHHHHHhCCCCCceeeeccccCCCCCceEEeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEeCCchhHHHHH
Q 006111           39 SDLNTAWDIFSMSVQKYPGNRMLGWRPFVDGKFGPYVWKTYKEVYEEVLQIVSALRASGAEPGCRVGIYGANCPQWVEAM  118 (660)
Q Consensus        39 ~~~~ti~~~l~~~a~~~pd~~a~~~~~~~d~~~~~~~~~Ty~ql~~~v~~lA~~L~~~Gl~~gd~V~l~~~n~~e~~~~~  118 (660)
                      ....++.++|+++++++||++|+++.   +      +.+||+||.++++++|++|++.|+++||+|+|+++|++++++++
T Consensus       444 ~~~~sl~~ll~~~a~~~pd~~Al~~~---~------~~lTY~eL~~ra~rlA~~L~~~Gv~~Gd~VaI~~~n~~e~v~a~  514 (994)
T PRK07868        444 HTRISLGRIIAEQARDAPKGEFLLFD---G------RVHTYEAVNRRINNVVRGLIAVGVRQGDRVGVLMETRPSALVAI  514 (994)
T ss_pred             CCCccHHHHHHHHHHHCCCCeEEEeC---C------ceeeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEcCCCHHHHHHH
Confidence            45568999999999999999999875   3      47999999999999999999999999999999999999999999


Q ss_pred             HHHHhCCCeEEecCCCCChhHHHHHHhcccceEEEEccchhhhhhccccccccCccEEEEecCCcHHHHHHHhhCCccee
Q 006111          119 EACNALSLICVPLYDTLGPGAVNFILDHAEIDFVFVQDKKVKELLSPDCRSAQRLRVMVCFTSLTAEQKEMAVQTGIKPY  198 (660)
Q Consensus       119 lA~~~~G~~~vpl~~~~~~~~l~~~l~~~~~~~ii~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~  198 (660)
                      +||+++|++++|++|.   .++.++++.++++++|++......+...       ...+++++.......  .........
T Consensus       515 lA~~~aGav~vpl~p~---~~l~~il~~s~~~~li~~~~~~~~~~~~-------~~~iiv~~~~~~~~~--~~~~~~~~~  582 (994)
T PRK07868        515 AALSRLGAVAVLMPPD---TDLAAAVRLGGVTEIITDPTNLEAARQL-------PGRVLVLGGGESRDL--DLPDDADVI  582 (994)
T ss_pred             HHHHhcCCEEEEeCCc---hhHHHHHhccCCeEEEEChHHHHHHHhc-------CceEEEecCCccccc--cCCcchhhh
Confidence            9999999999999985   6789999999999999987766544221       123444432110000  000000001


Q ss_pred             eHHHHHhcCcc--CCccCCCCCCCceEEEEecCCCCCCCceeeecchhHHHHhhhhhhhcccccCCCCCCcEEEEecChh
Q 006111          199 SWDEFLHLGKV--NEMEILPPQPFNICTIMYTSGTSGDPKGVVLTHETIATFVSGVDLFLDQFEDKMTVDDVYLSFLPLA  276 (660)
Q Consensus       199 ~~~~~~~~~~~--~~~~~~~~~~~~~~~i~~TSGTTG~pK~v~~th~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~pl~  276 (660)
                      .+.++......  ......+..++++++|+|| ||||.||++.++|.++..........+     ++..+|++++.+|++
T Consensus       583 ~~~~~~~~~~~~~~~~~~~~~~~dd~a~IiyT-gStgtpKpk~vt~~~~~~~~~~~~~~~-----~l~~~d~~L~~~Pl~  656 (994)
T PRK07868        583 DMEKIDPDAVELPGWYRPNPGLARDLAFIAFS-TAGGELVAKQITNYRWALSAFGTASAA-----ALDRRDTVYCLTPLH  656 (994)
T ss_pred             hhhhcCcccccCCcccCCCCCCCCccEEEEEe-CCCCCcCcEEEehHHHHHHHHhhhhhc-----CCCCCCeEEEecChH
Confidence            11111000000  0001112236899999999 577777877778876654443333333     678899999999999


Q ss_pred             HHHHHHHHHHH-hhcCcEEEEecC-ChhhHHHHhhhhcCeEEEechHHHHHHHHHHHHHHHhhchHHHHHHHHHHHHHHH
Q 006111          277 HILDRVIEEYF-FRRGASVGYYHG-DLNALRDDLMELKPTLLAGVPRVFEKIHEGIKKALEELRPLRRRIFDALYKYKLA  354 (660)
Q Consensus       277 ~~~g~~~~l~~-l~~G~~~v~~~~-~~~~~~~~i~~~~~t~~~~~p~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~  354 (660)
                      |.+++...+.+ ++.|+++++.+. ++..+++.|+++++|+++++|+++..|.+....                      
T Consensus       657 h~~gl~~~l~~~l~gG~~vvl~~~~~~~~~~~~I~~~~vT~~~~~Ps~l~~L~~~~~~----------------------  714 (994)
T PRK07868        657 HESGLLVSLGGAVVGGSRIALSRGLDPDRFVQEVRQYGVTVVSYTWAMLREVVDDPAF----------------------  714 (994)
T ss_pred             HHhHHHHHHHHHhccceEEEecCCCCHHHHHHHHHHhCCcEEEeHHHHHHHHHhCcCC----------------------
Confidence            99999875554 555666666554 899999999999999999999999988642100                      


Q ss_pred             HHhhCCCCCCcchhhhHHHHHHHHHHhCCcEeEEEEccCCCCHHHHHHHHHhcC-CceeeecCCCCCCCceecccCCCcc
Q 006111          355 WMNMGYKQREASPLADLLAFRKVKARLGGRLRLVISGGAPLSTEVEEFLRVTCC-AFLVQGYGLTETCGPTTVCFPDEMC  433 (660)
Q Consensus       355 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lr~i~~~G~~l~~~~~~~~~~~~~-~~v~~~YG~tE~~~~~~~~~~~~~~  433 (660)
                                     ...+        .+++|.++  |+.+++++.+.+.+.++ +++++.||+||++...+.. .  ..
T Consensus       715 ---------------~~~~--------~~slr~~~--g~gl~~~l~~~~~~~~~~~~l~~~YG~TE~~~~~~~~-~--~~  766 (994)
T PRK07868        715 ---------------VLHG--------NHPVRLFI--GSGMPTGLWERVVEAFAPAHVVEFFATTDGQAVLANV-S--GA  766 (994)
T ss_pred             ---------------ccCC--------CCceEEEe--cCCCCHHHHHHHHHHhCchheeeeeeccccccccccc-C--CC
Confidence                           0000        13789776  33499999999999886 8899999999987654322 1  12


Q ss_pred             ccCccCCCccCe-eEEeeec----------CCCCCCCCCCCCCceEEEccCCcccccCCCchhh--hhcc--cCCccccC
Q 006111          434 MVGTAGPVSVYS-ELRLEEV----------PEMGYSPLDDPPCGEVCVRGKTLFSGYYKNPDLT--RESI--IDGWFHTG  498 (660)
Q Consensus       434 ~~~~~G~~~~~~-~v~ivd~----------~~~~~~~~~~~~~Gei~v~g~~~~~gy~~~~~~~--~~~~--~~g~~~TG  498 (660)
                      ..+++|+|++++ +++|+..          +++....++.|+.|||+++++..    + ++..+  +..|  .+|||+||
T Consensus       767 ~~~svG~p~pg~~~v~i~~~d~~~g~li~d~~G~~~~~~~ge~Gel~~~~~~~----~-~p~~t~~~~~~~~~dgw~~TG  841 (994)
T PRK07868        767 KIGSKGRPLPGAGRVELAAYDPEHDLILEDDRGFVRRAEVNEVGVLLARARGP----I-DPTASVKRGVFAPADTWISTE  841 (994)
T ss_pred             CCcccCCccCCCCceeEEEecCcCCceeecCCceEEEcCCCCceEEEEecCCC----C-ChhhhhHhcccccCCEEEecc
Confidence            347999999998 6766421          22211234567899999999864    3 33332  2234  37999999


Q ss_pred             ceEEECCCCcEEEEeccCCeeEcCCCeeecchhHHHHHhcCcCcceEEEEecCCC--CeEEEEEEcChhhHHHHHHHCCC
Q 006111          499 DIGQILPNGVVKIIDRKKNLIKISQGEYVALEYLENVYCVAPIIEDIWVYGDSLK--SMLVAVVVPCEEDTKKWAYSNGH  576 (660)
Q Consensus       499 Dl~~~~~~G~l~~~GR~~d~i~~~~G~~v~~~~iE~~l~~~p~V~~~~V~~~~~~--~~~~a~v~~~~~~~~~~~~~~~~  576 (660)
                      |+|++|+||+|+++||.||+||+ +|.+|+|.|||++|.+||.|.+|+|++.+++  +.++|+|+++++..        .
T Consensus       842 Dlg~~d~dG~l~~~GR~dd~Ik~-~G~~I~p~EIE~~L~~hp~V~~aaVvg~~d~~~~~~~a~Vv~~~~~~--------~  912 (994)
T PRK07868        842 YLFRRDDDGDYWLVDRRGSVIRT-ARGPVYTEPVTDALGRIGGVDLAVTYGVEVGGRQLAVAAVTLRPGAA--------I  912 (994)
T ss_pred             ceEEEcCCCCEEEeccCCCEEEe-CCceEcHHHHHHHHhcCCCeeEEEEEeecCCCCceEEEEEEeCCCCc--------C
Confidence            99999999999999999999997 7899999999999999999999999997765  47899999876420        0


Q ss_pred             CCcHHHHhccHHHHHHHHHHHHHHHHhCCCCCceeeeEEEEecCCCCCCCCccccccccchHHHHHHH
Q 006111          577 AGSFLELCSLVQLQNYILSELKNAAERNKLRGFEHIKGVILDPRPFDMERDLVTATLKKKRNKLLIYY  644 (660)
Q Consensus       577 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~~l~~~~~p~~i~~~~~~~~~~~~P~t~~GKv~R~~l~~~~  644 (660)
                              +        .++|+++++ . +|.|++|+.|++++      .+|+|++||++|++|+++-
T Consensus       913 --------~--------~~~L~~~l~-~-l~~y~vP~~i~~v~------~lP~T~sGKi~r~~L~~~~  956 (994)
T PRK07868        913 --------T--------AADLTEALA-S-LPVGLGPDIVHVVP------EIPLSATYRPTVSALRAAG  956 (994)
T ss_pred             --------C--------HHHHHHHHH-h-CCCCcCCeEEEEeC------CCCCCccccEehHHHHhcC
Confidence                    1        234555655 3 89999999999974      4589999999999998653

>TIGR01923 menE O-succinylbenzoate-CoA ligase

Probab=100.00  E-value=3.3e-56  Score=480.26  Aligned_cols=433  Identities=25%  Similarity=0.311  Sum_probs=355.0

Q ss_pred             eHHHHHHHHHHHHHHHHHcCCCCCCEEEEEeCCchhHHHHHHHHHhCCCeEEecCCCCChhHHHHHHhcccceEEEEccc
Q 006111           78 TYKEVYEEVLQIVSALRASGAEPGCRVGIYGANCPQWVEAMEACNALSLICVPLYDTLGPGAVNFILDHAEIDFVFVQDK  157 (660)
Q Consensus        78 Ty~ql~~~v~~lA~~L~~~Gl~~gd~V~l~~~n~~e~~~~~lA~~~~G~~~vpl~~~~~~~~l~~~l~~~~~~~ii~~~~  157 (660)
                      ||+||.++++++|..|.+.|+++||+|+++++|+++++++++||+++|++++|+++.++.+.+..+++.++++++++++.
T Consensus         1 Ty~~l~~~~~~~a~~l~~~g~~~gd~v~i~~~~~~~~~~~~la~~~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~   80 (436)
T TIGR01923         1 TWQDLDCEAAHLAKALKAQGIRSGSRVALVGQNSIEMVLLLHACLLLGAEIAMLNTRLTENERTNQLEDLDVQLLLTDSL   80 (436)
T ss_pred             CHHHHHHHHHHHHHHHHHhCCCCCCEEEEEcCCCHHHHHHHHHHHhcCcEEEecCcCCCHHHHHHHHHhcCCCEEEEcCc
Confidence            79999999999999999999999999999999999999999999999999999999999999999999999999999876


Q ss_pred             hhhhhhccccccccCccEEEEecCCcHHHHHHHhhCCcceeeHHHHHhcCccCCccCCCCCCCceEEEEecCCCCCCCce
Q 006111          158 KVKELLSPDCRSAQRLRVMVCFTSLTAEQKEMAVQTGIKPYSWDEFLHLGKVNEMEILPPQPFNICTIMYTSGTSGDPKG  237 (660)
Q Consensus       158 ~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~TSGTTG~pK~  237 (660)
                      .....              +..                  ..+..+................+++++++|||||||.||+
T Consensus        81 ~~~~~--------------~~~------------------~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~TSGtTG~PK~  128 (436)
T TIGR01923        81 LEEKD--------------FQA------------------DSLDRIEAAGRYETSLSASFNMDQIATLMFTSGTTGKPKA  128 (436)
T ss_pred             ccccc--------------eee------------------cchHhhhhcccccccccccCCcCceEEEEeCCCCCCCCcE
Confidence            32110              000                  0111111111111111233457899999999999999999


Q ss_pred             eeecchhHHHHhhhhhhhcccccCCCCCCcEEEEecChhHHHHHHHHHHHhhcCcEEEEecCChhhHHHHhhhhcCeEEE
Q 006111          238 VVLTHETIATFVSGVDLFLDQFEDKMTVDDVYLSFLPLAHILDRVIEEYFFRRGASVGYYHGDLNALRDDLMELKPTLLA  317 (660)
Q Consensus       238 v~~th~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~pl~~~~g~~~~l~~l~~G~~~v~~~~~~~~~~~~i~~~~~t~~~  317 (660)
                      |.++|+++...+......+     ++..+++++..+|++|..++...+.++..|+++++.+. ...+++.++++++|++.
T Consensus       129 v~~s~~~~~~~~~~~~~~~-----~~~~~d~~~~~~~~~~~~~~~~~~~~l~~g~~~~~~~~-~~~~~~~l~~~~~t~~~  202 (436)
T TIGR01923       129 VPHTFRNHYASAVGSKENL-----GFTEDDNWLLSLPLYHISGLSILFRWLIEGATLRIVDK-FNQLLEMIANERVTHIS  202 (436)
T ss_pred             EEEehHHHHHHHHHHHhhc-----CCCCCceEEEccCcHhHHHHHHHHHHHhcCceEEecch-HHHHHHHHHHhCCeEEE
Confidence            9999999999888877766     78899999999999999998878888999999998864 34999999999999999


Q ss_pred             echHHHHHHHHHHHHHHHhhchHHHHHHHHHHHHHHHHHhhCCCCCCcchhhhHHHHHHHHHHhCCcEeEEEEccCCCCH
Q 006111          318 GVPRVFEKIHEGIKKALEELRPLRRRIFDALYKYKLAWMNMGYKQREASPLADLLAFRKVKARLGGRLRLVISGGAPLST  397 (660)
Q Consensus       318 ~~p~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lr~i~~~G~~l~~  397 (660)
                      ++|+++..+.+....                                                 .+++|.++++|+++++
T Consensus       203 ~~P~~l~~l~~~~~~-------------------------------------------------~~~l~~~~~~G~~~~~  233 (436)
T TIGR01923       203 LVPTQLNRLLDEGGH-------------------------------------------------NENLRKILLGGSAIPA  233 (436)
T ss_pred             eHHHHHHHHHhCcCC-------------------------------------------------CCceEEEEECCCCCCH
Confidence            999999887642110                                                 0389999999999999


Q ss_pred             HHHHHHHHhcCCceeeecCCCCCCCceecccCCCccccCccCCCccCeeEEeeecCCCCCCCCCCCCCceEEEccCCccc
Q 006111          398 EVEEFLRVTCCAFLVQGYGLTETCGPTTVCFPDEMCMVGTAGPVSVYSELRLEEVPEMGYSPLDDPPCGEVCVRGKTLFS  477 (660)
Q Consensus       398 ~~~~~~~~~~~~~v~~~YG~tE~~~~~~~~~~~~~~~~~~~G~~~~~~~v~ivd~~~~~~~~~~~~~~Gei~v~g~~~~~  477 (660)
                      ++.+.+.. +|+.+++.||+||++...+...........++|.+++++++++.. ++.       ++.|||+++|+.++.
T Consensus       234 ~~~~~~~~-~~~~~~~~YG~tE~~~~~~~~~~~~~~~~~~~G~~~~~~~~~i~~-~~~-------~~~Gel~v~~~~~~~  304 (436)
T TIGR01923       234 PLIEEAQQ-YGLPIYLSYGMTETCSQVTTATPEMLHARPDVGRPLAGREIKIKV-DNK-------EGHGEIMVKGANLMK  304 (436)
T ss_pred             HHHHHHHH-hCCceeeEecCCccchhccCcCccccccccCCCccCCCcEEEEEe-CCC-------CCceEEEEECCccch
Confidence            99998876 599999999999998876654443322223589999999999854 222       157999999999999


Q ss_pred             ccCCCchhhhhcccCCccccCceEEECCCCcEEEEeccCCeeEcCCCeeecchhHHHHHhcCcCcceEEEEecCCC---C
Q 006111          478 GYYKNPDLTRESIIDGWFHTGDIGQILPNGVVKIIDRKKNLIKISQGEYVALEYLENVYCVAPIIEDIWVYGDSLK---S  554 (660)
Q Consensus       478 gy~~~~~~~~~~~~~g~~~TGDl~~~~~~G~l~~~GR~~d~i~~~~G~~v~~~~iE~~l~~~p~V~~~~V~~~~~~---~  554 (660)
                      ||++++..+...+.+|||+|||+++++.||.+++.||.+|+|++ +|.+|++.+||++|.++|.|.+++|++.++.   .
T Consensus       305 gy~~~~~~~~~~~~~~~~~TGD~~~~~~dg~~~~~GR~~d~i~~-~G~~v~~~~iE~~l~~~~~v~~~~v~~~~~~~~~~  383 (436)
T TIGR01923       305 GYLYQGELTPAFEQQGWFNTGDIGELDGEGFLYVLGRRDDLIIS-GGENIYPEEIETVLYQHPGIQEAVVVPKPDAEWGQ  383 (436)
T ss_pred             hhCCChhhhhhhhcCCCeeccceEEEcCCCCEEEeccccCeEEe-CCEeeCHHHHHHHHHhCCCeeEEEEeCCcchhcCC
Confidence            99998888877778899999999999999999999999999997 8999999999999999999999999987654   3


Q ss_pred             eEEEEEEcChhhHHHHHHHCCCCCcHHHHhccHHHHHHHHHHHHHHHHhCCCCCceeeeEEEEecCCCCCCCCccccccc
Q 006111          555 MLVAVVVPCEEDTKKWAYSNGHAGSFLELCSLVQLQNYILSELKNAAERNKLRGFEHIKGVILDPRPFDMERDLVTATLK  634 (660)
Q Consensus       555 ~~~a~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~l~~~~~p~~i~~~~~~~~~~~~P~t~~GK  634 (660)
                      .+++++++.++.                  +..        .+.++++ ..|+.|++|..+.++      +.||+|++||
T Consensus       384 ~~~~~v~~~~~~------------------~~~--------~l~~~l~-~~l~~~~~p~~i~~~------~~iP~t~~GK  430 (436)
T TIGR01923       384 VPVAYIVSESDI------------------SQA--------KLIAYLT-EKLAKYKVPIAFEKL------DELPYNASGK  430 (436)
T ss_pred             eeEEEEEECCCC------------------CHH--------HHHHHHH-HhhhCCCCCeEEEEe------cCCCCCCCCc
Confidence            677888776532                  112        2223332 578899999999886      4468999999


Q ss_pred             cchHHH
Q 006111          635 KKRNKL  640 (660)
Q Consensus       635 v~R~~l  640 (660)
                      ++|++|
T Consensus       431 ~~r~~L  436 (436)
T TIGR01923       431 ILRNQL  436 (436)
T ss_pred             eecccC
Confidence            999875

This model represents an enzyme, O-succinylbenzoate-CoA ligase, which is involved in the fourth step of the menaquinone biosynthesis pathway. O-succinylbenzoate-CoA ligase, together with menB - naphtoate synthase, take 2-succinylbenzoate and convert it into 1,4-di-hydroxy-2- naphtoate.

>PRK07768 long-chain-fatty-acid--CoA ligase; Validated

Probab=100.00  E-value=1.5e-55  Score=488.45  Aligned_cols=494  Identities=17%  Similarity=0.171  Sum_probs=372.0

Q ss_pred             CCcHHHHHHHHHHhCCCCCceeeeccccCCCCCceEEeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEeCCchhHHHHHHH
Q 006111           41 LNTAWDIFSMSVQKYPGNRMLGWRPFVDGKFGPYVWKTYKEVYEEVLQIVSALRASGAEPGCRVGIYGANCPQWVEAMEA  120 (660)
Q Consensus        41 ~~ti~~~l~~~a~~~pd~~a~~~~~~~d~~~~~~~~~Ty~ql~~~v~~lA~~L~~~Gl~~gd~V~l~~~n~~e~~~~~lA  120 (660)
                      |.++.+.+..+|...|+.+++...   ++    .+.+||.||+++++++|.+|.+.|+++||+|+++++|+++++++++|
T Consensus         1 ~~~~~~~~~~~~~~~~~~~~~~~~---~~----~~~~ty~el~~~v~~~a~~L~~~g~~~gd~V~l~~~~~~~~~~~~la   73 (545)
T PRK07768          1 MSRFTEKMYANARTSPRGMVTGEP---DA----PVRHTWGEVHERARRIAGGLAAAGVGPGDAVAVLAGAPVEIAPTAQG   73 (545)
T ss_pred             CchHHHHHHHHhhCCCcceEEecC---CC----ceEecHHHHHHHHHHHHHHHHHhCCCCCCEEEEECCCchHHHHHHHH
Confidence            467899999999999999988665   43    26899999999999999999999999999999999999999999999


Q ss_pred             HHhCCCeEEecCCCCChhHH-------HHHHhcccceEEEEccchhhhhhccccccccCccEEEEecCCcHHHHHHHhhC
Q 006111          121 CNALSLICVPLYDTLGPGAV-------NFILDHAEIDFVFVQDKKVKELLSPDCRSAQRLRVMVCFTSLTAEQKEMAVQT  193 (660)
Q Consensus       121 ~~~~G~~~vpl~~~~~~~~l-------~~~l~~~~~~~ii~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~  193 (660)
                      |+++|++++++++..+.+++       ..+++.++++.+++++........ ...                        .
T Consensus        74 ~~~~g~v~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~-~~~------------------------~  128 (545)
T PRK07768         74 LWMRGASLTMLHQPTPRTDLAVWAEDTLRVIGMIGAKAVVVGEPFLAAAPV-LEE------------------------K  128 (545)
T ss_pred             HHHcCccccccCCCCCcchhHHHHHHHHHHHHhCCCCEEEecchhhhhhhh-hcc------------------------c
Confidence            99999999999988876554       446777899999998765432211 000                        0


Q ss_pred             CcceeeHHHHHhcCccCCccCCCCCCCceEEEEecCCCCCCCceeeecchhHHHHhhhhhhhcccccCCCCCC-cEEEEe
Q 006111          194 GIKPYSWDEFLHLGKVNEMEILPPQPFNICTIMYTSGTSGDPKGVVLTHETIATFVSGVDLFLDQFEDKMTVD-DVYLSF  272 (660)
Q Consensus       194 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~TSGTTG~pK~v~~th~~l~~~~~~~~~~~~~~~~~~~~~-~~~l~~  272 (660)
                      .....++.++.....   .......++++++++|||||||.||+|+++|+++...+......+     ++..+ |++++.
T Consensus       129 ~~~~~~~~~l~~~~~---~~~~~~~~~~~a~i~~TSGtTG~PKgv~~s~~~~~~~~~~~~~~~-----~~~~~~d~~~~~  200 (545)
T PRK07768        129 GIRVLTVADLLAADP---IDPVETGEDDLALMQLTSGSTGSPKAVQITHGNLYANAEAMFVAA-----EFDVETDVMVSW  200 (545)
T ss_pred             CCceeehhhhcccCC---CCcCCCCCCCEEEEEeCCCCCCCCceEEEcHHHHHHHHHHHHHhc-----CCCCCCceeEEe
Confidence            111234444443221   122345679999999999999999999999999998887766655     66665 899999


Q ss_pred             cChhHHHHHHH-HHHHhhcCcEEEEecC-----ChhhHHHHhhhhcCeEEEechHHHHHHHHHHHHHHHhhchHHHHHHH
Q 006111          273 LPLAHILDRVI-EEYFFRRGASVGYYHG-----DLNALRDDLMELKPTLLAGVPRVFEKIHEGIKKALEELRPLRRRIFD  346 (660)
Q Consensus       273 ~pl~~~~g~~~-~l~~l~~G~~~v~~~~-----~~~~~~~~i~~~~~t~~~~~p~~~~~l~~~~~~~~~~~~~~~~~~~~  346 (660)
                      +|++|.+++.. ...++..|+++++.+.     ++..+.+.+++++++++.++|..+..+...+......          
T Consensus       201 ~p~~~~~g~~~~~~~~l~~g~~~v~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~l~~~~~~~~~~----------  270 (545)
T PRK07768        201 LPLFHDMGMVGFLTVPMYFGAELVKVTPMDFLRDPLLWAELISKYRGTMTAAPNFAYALLARRLRRQAKP----------  270 (545)
T ss_pred             CCCccchHHHHHHHHHHHCCceEEEeCHHHHHHhHHHHHHHHHHhCCEEEECchHHHHHHHHHHhccccc----------
Confidence            99999999876 5567999999988753     6778899999999999988888877665432111000          


Q ss_pred             HHHHHHHHHHhhCCCCCCcchhhhHHHHHHHHHHhCCcEeEEEEccCCCCHHHHHHHHHh---cCC---ceeeecCCCCC
Q 006111          347 ALYKYKLAWMNMGYKQREASPLADLLAFRKVKARLGGRLRLVISGGAPLSTEVEEFLRVT---CCA---FLVQGYGLTET  420 (660)
Q Consensus       347 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lr~i~~~G~~l~~~~~~~~~~~---~~~---~v~~~YG~tE~  420 (660)
                                             ...++        +++|.++++|+++++.+.+++.+.   +|.   .+++.||+||+
T Consensus       271 -----------------------~~~~~--------~~lr~~~~~g~~~~~~~~~~~~~~~~~~g~~~~~~~~~yG~tE~  319 (545)
T PRK07768        271 -----------------------GAFDL--------SSLRFALNGAEPIDPADVEDLLDAGARFGLRPEAILPAYGMAEA  319 (545)
T ss_pred             -----------------------cCCCc--------hheeeEEeccCCCCHHHHHHHHHHHHhcCCCccccccccccccc
Confidence                                   00111        389999999999999999998874   555   49999999999


Q ss_pred             CCceecccCCC-------------------------ccccCccCCCccCeeEEeeecCCCCCCCCCCCCCceEEEccCCc
Q 006111          421 CGPTTVCFPDE-------------------------MCMVGTAGPVSVYSELRLEEVPEMGYSPLDDPPCGEVCVRGKTL  475 (660)
Q Consensus       421 ~~~~~~~~~~~-------------------------~~~~~~~G~~~~~~~v~ivd~~~~~~~~~~~~~~Gei~v~g~~~  475 (660)
                      +..++....+.                         ....+++|+|++++++++++ +++..+  ..++.|||+++|+.+
T Consensus       320 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~g~~~~i~~-~~~~~~--~~g~~Gel~v~~~~~  396 (545)
T PRK07768        320 TLAVSFSPCGAGLVVDEVDADLLAALRRAVPATKGNTRRLATLGPPLPGLEVRVVD-EDGQVL--PPRGVGVIELRGESV  396 (545)
T ss_pred             ceEEEccCCCCCcceeeechhHhhccCceeccCCCCcceEEeccCCCCCCEEEEEC-CCCCCC--CCCCEEEEEEccCcc
Confidence            87655433221                         11336899999999999999 776544  456799999999999


Q ss_pred             ccccCCCchhhhhcccCCccccCceEEECCCCcEEEEeccCCeeEcCCCeeecchhHHHHHhcCcCcceEEEEecC--CC
Q 006111          476 FSGYYKNPDLTRESIIDGWFHTGDIGQILPNGVVKIIDRKKNLIKISQGEYVALEYLENVYCVAPIIEDIWVYGDS--LK  553 (660)
Q Consensus       476 ~~gy~~~~~~~~~~~~~g~~~TGDl~~~~~~G~l~~~GR~~d~i~~~~G~~v~~~~iE~~l~~~p~V~~~~V~~~~--~~  553 (660)
                      +.||++++......+.+|||+|||+|+++++|.++++||.+|+|++ +|.+|+|.+||+.|.+||+|.+++|++..  +.
T Consensus       397 ~~gy~~~~~~~~~~~~~g~~~TGDl~~~~~~g~l~~~GR~~d~i~~-~G~~v~~~eiE~~l~~~~~v~~~~vv~~~~~~~  475 (545)
T PRK07768        397 TPGYLTMDGFIPAQDADGWLDTGDLGYLTEEGEVVVCGRVKDVIIM-AGRNIYPTDIERAAARVEGVRPGNAVAVRLDAG  475 (545)
T ss_pred             cccccCCCCCcccccCCCeeeccceEEEecCCEEEEEccccceEEE-CCEecCHHHHHHHHHhCcccccceEEEEEecCC
Confidence            9999987655554457899999999999999999999999999997 79999999999999999999998776532  22


Q ss_pred             ---CeEEEEEEcChhhHHHHHHHCCCCCcHHHHhccHHHHHHHHHHHHHHHHhCCCCCceeeeEEEEecCCCCCCCCccc
Q 006111          554 ---SMLVAVVVPCEEDTKKWAYSNGHAGSFLELCSLVQLQNYILSELKNAAERNKLRGFEHIKGVILDPRPFDMERDLVT  630 (660)
Q Consensus       554 ---~~~~a~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~l~~~~~p~~i~~~~~~~~~~~~P~t  630 (660)
                         ...+++++.....                   .......+.+.+.+... ..+  ..+|..+.+++    .+.+|+|
T Consensus       476 ~~~~~~~~~v~~~~~~-------------------~~~~~~~l~~~~~~~l~-~~~--~~~p~~v~~v~----~~~lP~t  529 (545)
T PRK07768        476 HSREGFAVAVESNAFE-------------------DPAEVRRIRHQVAHEVV-AEV--GVRPRNVVVLG----PGSIPKT  529 (545)
T ss_pred             CCceEEEEEEEecccc-------------------cHHHHHHHHHHHHHHHH-HHh--CCCccEEEEeC----CCcCCCC
Confidence               2344444333221                   11111122333322222 111  14577787774    2457999


Q ss_pred             cccccchHHHHHHHH
Q 006111          631 ATLKKKRNKLLIYYQ  645 (660)
Q Consensus       631 ~~GKv~R~~l~~~~~  645 (660)
                      ++||++|+.|+++|.
T Consensus       530 ~~GKi~r~~l~~~~~  544 (545)
T PRK07768        530 PSGKLRRANAAELVT  544 (545)
T ss_pred             CchhHHHHHHHHhcC
Confidence            999999999998874

>PRK08308 acyl-CoA synthetase; Validated

Probab=100.00  E-value=3.3e-53  Score=452.77  Aligned_cols=396  Identities=16%  Similarity=0.110  Sum_probs=331.5

Q ss_pred             eEEeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEeCCchhHHHHHHHHHhCCCeEEecCCCCChhHHHHHHhcccceEEEE
Q 006111           75 VWKTYKEVYEEVLQIVSALRASGAEPGCRVGIYGANCPQWVEAMEACNALSLICVPLYDTLGPGAVNFILDHAEIDFVFV  154 (660)
Q Consensus        75 ~~~Ty~ql~~~v~~lA~~L~~~Gl~~gd~V~l~~~n~~e~~~~~lA~~~~G~~~vpl~~~~~~~~l~~~l~~~~~~~ii~  154 (660)
                      +++||+||.++++++|+.|. .|+++|++|+++++|+++++++++|++++|++++|+++..+.+.+..+++.++++++++
T Consensus         7 ~~~ty~el~~~~~~~a~~l~-~~~~~g~~V~i~~~~~~~~~~~~la~~~~G~~~v~l~~~~~~~~~~~~~~~~~~~~~i~   85 (414)
T PRK08308          7 EEYSKSDFDLRLQRYEEMEQ-FQEAAGNRFAVCLKDPFDIITLVFFLKEKGASVLPIHPDTPKEAAIRMAKRAGCHGLLY   85 (414)
T ss_pred             ceecHHHHHHHHHHHHHHHH-cCCCCCCEEEEECCCChHHHHHHHHHHHCCeEEEecCCCCCHHHHHHHHHhCCCCEEEe
Confidence            58999999999999999985 68999999999999999999999999999999999999999999999999999999998


Q ss_pred             ccchhhhhhccccccccCccEEEEecCCcHHHHHHHhhCCcceeeHHHHHhcCccCCccCCCCCCCceEEEEecCCCCCC
Q 006111          155 QDKKVKELLSPDCRSAQRLRVMVCFTSLTAEQKEMAVQTGIKPYSWDEFLHLGKVNEMEILPPQPFNICTIMYTSGTSGD  234 (660)
Q Consensus       155 ~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~TSGTTG~  234 (660)
                      ++....                  ..                                ......++++++++|||||||.
T Consensus        86 ~~~~~~------------------~~--------------------------------~~~~~~~~~~~~i~~TSGtTG~  115 (414)
T PRK08308         86 GESDFT------------------KL--------------------------------EAVNYLAEEPSLLQYSSGTTGE  115 (414)
T ss_pred             cCcccc------------------cc--------------------------------cCCCCCCCCceEEEECCCCCCC
Confidence            753110                  00                                0012356889999999999999


Q ss_pred             CceeeecchhHHHHhhhhhhhcccccCCCCCCcEEEEecChhHHHHHHH-HHHHhhcCcEEEEecC-ChhhHHHHhhhhc
Q 006111          235 PKGVVLTHETIATFVSGVDLFLDQFEDKMTVDDVYLSFLPLAHILDRVI-EEYFFRRGASVGYYHG-DLNALRDDLMELK  312 (660)
Q Consensus       235 pK~v~~th~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~pl~~~~g~~~-~l~~l~~G~~~v~~~~-~~~~~~~~i~~~~  312 (660)
                      ||+|.+||+++.+.+..+...+     ....+++++..+|++|.+|+.. .+.++..|+++++.+. ++..+++.+++++
T Consensus       116 PKgv~~s~~~l~~~~~~~~~~~-----~~~~~~~~~~~~p~~h~~g~~~~~~~~l~~G~~~~~~~~~~~~~~~~~l~~~~  190 (414)
T PRK08308        116 PKLIRRSWTEIDREIEAYNEAL-----NCEQDETPIVACPVTHSYGLICGVLAALTRGSKPVIITNKNPKFALNILRNTP  190 (414)
T ss_pred             CcEEEEehHhHHHHHHHHHHhh-----CCCcccEEEEecCcHHHHHHHHHHHHHHHcCCEEEecCCCCHHHHHHHHHHhC
Confidence            9999999999998888776666     6778899999999999999865 6778999999988876 8999999999999


Q ss_pred             CeEEEechHHHHHHHHHHHHHHHhhchHHHHHHHHHHHHHHHHHhhCCCCCCcchhhhHHHHHHHHHHhCCcEeEEEEcc
Q 006111          313 PTLLAGVPRVFEKIHEGIKKALEELRPLRRRIFDALYKYKLAWMNMGYKQREASPLADLLAFRKVKARLGGRLRLVISGG  392 (660)
Q Consensus       313 ~t~~~~~p~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lr~i~~~G  392 (660)
                      +|+++++|.++..+.+....                                                 ..+++.++++|
T Consensus       191 ~t~~~~~P~~~~~l~~~~~~-------------------------------------------------~~~l~~~~~~G  221 (414)
T PRK08308        191 QHILYAVPLMLHILGRLLPG-------------------------------------------------TFQFHAVMTSG  221 (414)
T ss_pred             CeEEEcCHHHHHHHHhcCCc-------------------------------------------------cccccEEEEcc
Confidence            99999999999888642110                                                 02678899999


Q ss_pred             CCCCHHHHHHHHHhcCCceeeecCCCCCCCceecccCCCccccCccCCCccCeeEEeeecCCCCCCCCCCCCCceEEEcc
Q 006111          393 APLSTEVEEFLRVTCCAFLVQGYGLTETCGPTTVCFPDEMCMVGTAGPVSVYSELRLEEVPEMGYSPLDDPPCGEVCVRG  472 (660)
Q Consensus       393 ~~l~~~~~~~~~~~~~~~v~~~YG~tE~~~~~~~~~~~~~~~~~~~G~~~~~~~v~ivd~~~~~~~~~~~~~~Gei~v~g  472 (660)
                      +++++++.+.+++. +.++++.||+||++.+.....   ....+++|+|++++++++.+ ++        ++.|||++++
T Consensus       222 ~~l~~~~~~~~~~~-~~~~~~~YG~tE~~~~~~~~~---~~~~~~~G~p~~~~~~~~~~-~~--------~~~gel~v~~  288 (414)
T PRK08308        222 TPLPEAWFYKLRER-TTYMMQQYGCSEAGCVSICPD---MKSHLDLGNPLPHVSVSAGS-DE--------NAPEEIVVKM  288 (414)
T ss_pred             CCCCHHHHHHHHHh-CChhhhccCccccCCeeecCC---CCCCCccCccCCCeEEEEec-CC--------CCCceEEEEc
Confidence            99999999999876 678999999999986543221   22347899999999999876 22        3479999975


Q ss_pred             CCcccccCCCchhhhhcccCCccccCceEEECCCCcEEEEeccCCeeEcCCCeeecchhHHHHHhcCcCcceEEEEecCC
Q 006111          473 KTLFSGYYKNPDLTRESIIDGWFHTGDIGQILPNGVVKIIDRKKNLIKISQGEYVALEYLENVYCVAPIIEDIWVYGDSL  552 (660)
Q Consensus       473 ~~~~~gy~~~~~~~~~~~~~g~~~TGDl~~~~~~G~l~~~GR~~d~i~~~~G~~v~~~~iE~~l~~~p~V~~~~V~~~~~  552 (660)
                      .                  ++||+|||+|++|++|++++.||.+|+|++ +|++|+|.+||++|.++|+|.+|+|++.++
T Consensus       289 ~------------------~~~~~TGDl~~~~~dg~l~~~GR~~~~ik~-~G~~v~p~eIE~~l~~~~~v~~a~v~~~~~  349 (414)
T PRK08308        289 G------------------DKEIFTKDLGYKSERGTLHFMGRMDDVINV-SGLNVYPIEVEDVMLRLPGVQEAVVYRGKD  349 (414)
T ss_pred             C------------------CceEECCceEEECCCccEEEecccCCeEEE-CCEEECHHHHHHHHHhCCCeeEEEEEeccC
Confidence            2                  579999999999999999999999999997 899999999999999999999999998765


Q ss_pred             C---CeEEEEEEcChhhHHHHHHHCCCCCcHHHHhccHHHHHHHHHHHHHHHHhCCCCCceeeeEEEEecCCCCCCCCcc
Q 006111          553 K---SMLVAVVVPCEEDTKKWAYSNGHAGSFLELCSLVQLQNYILSELKNAAERNKLRGFEHIKGVILDPRPFDMERDLV  629 (660)
Q Consensus       553 ~---~~~~a~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~l~~~~~p~~i~~~~~~~~~~~~P~  629 (660)
                      +   +.++++++.....                  +.        ++++++++ .+|+.|++|..+.++      +.+|+
T Consensus       350 ~~~~~~~~~~v~~~~~~------------------~~--------~~l~~~l~-~~l~~~~~P~~i~~v------~~iP~  396 (414)
T PRK08308        350 PVAGERVKAKVISHEEI------------------DP--------VQLREWCI-QHLAPYQVPHEIESV------TEIPK  396 (414)
T ss_pred             CCCCceEEEEEEeCCCC------------------CH--------HHHHHHHH-HhCccccCCcEEEEe------ccCCC
Confidence            4   4777787765421                  11        23334443 678999999999887      44689


Q ss_pred             ccccccchHHH
Q 006111          630 TATLKKKRNKL  640 (660)
Q Consensus       630 t~~GKv~R~~l  640 (660)
                      |++||++|+.|
T Consensus       397 t~~GKi~r~~~  407 (414)
T PRK08308        397 NANGKVSRKLL  407 (414)
T ss_pred             CCCcCeehhhh
Confidence            99999999954

>PF00501 AMP-binding: AMP-binding enzyme; InterPro: IPR000873 A number of prokaryotic and eukaryotic enzymes, which appear to act via an ATP-dependent covalent binding of AMP to their substrate, share a region of sequence similarity [, , ]

Probab=100.00  E-value=6.3e-54  Score=459.69  Aligned_cols=404  Identities=31%  Similarity=0.472  Sum_probs=314.6

Q ss_pred             HHHHHHhCCCCCceeeeccccCCCCCceEEeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEeCCchhHHHHHHHHHhCCCe
Q 006111           48 FSMSVQKYPGNRMLGWRPFVDGKFGPYVWKTYKEVYEEVLQIVSALRASGAEPGCRVGIYGANCPQWVEAMEACNALSLI  127 (660)
Q Consensus        48 l~~~a~~~pd~~a~~~~~~~d~~~~~~~~~Ty~ql~~~v~~lA~~L~~~Gl~~gd~V~l~~~n~~e~~~~~lA~~~~G~~  127 (660)
                      |+++|+++||++|+++.   ++     +++||+||+++++++|..|.+.|+++||+|+++++|+++++++++||+++|++
T Consensus         1 f~~~a~~~pd~~a~~~~---~~-----~~~Ty~~l~~~v~~la~~L~~~g~~~~~~V~i~~~n~~~~~~~~~A~~~~G~~   72 (417)
T PF00501_consen    1 FERQAQRYPDRIALIDD---EG-----RSLTYKQLYERVRKLAAALRKLGVKKGDRVAILLPNSIEFVVAFLACLRAGAI   72 (417)
T ss_dssp             HHHHHHHSTTSEEEEET---TT-----EEEEHHHHHHHHHHHHHHHHHTTSSTTSEEEEEESSSHHHHHHHHHHHHTT-E
T ss_pred             ChhHHhhCCCceEEEEC---CC-----EEEEHHHHHHHHHHHhhHHHHhCCCccccccccCCccceeeeeeccccccccc
Confidence            68999999999999971   23     79999999999999999999999999999999999999999999999999999


Q ss_pred             EEecCCCCChhHHHHHHhcccceEEEE----ccchhhhhhccccccccCccEEEEecCCcHHHHHHHhhCCcceeeHHHH
Q 006111          128 CVPLYDTLGPGAVNFILDHAEIDFVFV----QDKKVKELLSPDCRSAQRLRVMVCFTSLTAEQKEMAVQTGIKPYSWDEF  203 (660)
Q Consensus       128 ~vpl~~~~~~~~l~~~l~~~~~~~ii~----~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~  203 (660)
                      ++|++|.++.+++..+++.++++++|+    +......+.... ........++.++.....             ....+
T Consensus        73 ~v~l~~~~~~~~~~~~l~~~~~~~ii~~~~~d~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~-------------~~~~~  138 (417)
T PF00501_consen   73 PVPLDPSLSEDELRHILRQSGPKVIITSEAVDSEPLKKLKSIF-KQEDPSSSIIILDRDDLP-------------KKEAL  138 (417)
T ss_dssp             EEEEETTSSHHHHHHHHHHHTESEEEECHHHSCHHHHHHHHHH-TTSTTTEEEEEESHSSCT-------------TCHHH
T ss_pred             ccccccccccccccccccccceeEEEEeccccccccccchhhh-cccccccccccccccccc-------------ccccc
Confidence            999999999999999999999999997    222211121111 111233445555532210             00000


Q ss_pred             HhcCccCCccCCC-CCCCceEEEEecCCCCCCCceeeecchhHHHHhhhhhhhcccccCCCCCCcEEEEecChhHHHHH-
Q 006111          204 LHLGKVNEMEILP-PQPFNICTIMYTSGTSGDPKGVVLTHETIATFVSGVDLFLDQFEDKMTVDDVYLSFLPLAHILDR-  281 (660)
Q Consensus       204 ~~~~~~~~~~~~~-~~~~~~~~i~~TSGTTG~pK~v~~th~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~pl~~~~g~-  281 (660)
                      .......... .+ ..++++++++|||||||.||+|.++|+++++.+..+.  +... .+++  |++++.+|++|.+|+ 
T Consensus       139 ~~~~~~~~~~-~~~~~~~~~~~i~~TSGTTG~pK~v~~t~~~~~~~~~~~~--~~~~-~~~~--d~~l~~~p~~~~~g~~  212 (417)
T PF00501_consen  139 KSASLSDEPQ-SPEDSPDDPAFILFTSGTTGKPKGVVLTHRNLLAQARALA--LPEY-FGLG--DRILSFLPLSHIFGLI  212 (417)
T ss_dssp             HHHHHCHCSH-STTHTTTSEEEEEEESSSSSSEEEEEEEHHHHHHHHHHHH--HHHT-TTTT--TEEEESS-TTSHHHHH
T ss_pred             cccccccccc-cCCCCccceeEeeccccccccccccccccccccccccccc--cccc-cccC--ceEEeecccccccccc
Confidence            0000000000 00 0579999999999999999999999999999988765  1110 1333  599999999999999 


Q ss_pred             HHHHHHhhcCcEEEEecC-C---hhhHHHHhhhhcCeEEEechHHHHHHHHHHHHHHHhhchHHHHHHHHHHHHHHHHHh
Q 006111          282 VIEEYFFRRGASVGYYHG-D---LNALRDDLMELKPTLLAGVPRVFEKIHEGIKKALEELRPLRRRIFDALYKYKLAWMN  357 (660)
Q Consensus       282 ~~~l~~l~~G~~~v~~~~-~---~~~~~~~i~~~~~t~~~~~p~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  357 (660)
                      ...+.+++.|+++++.+. .   +..+++.++++++|+++++|.++..+++..... ...                    
T Consensus       213 ~~~~~~l~~G~~~~~~~~~~~~~~~~~~~~i~~~~~t~~~~~p~~l~~l~~~~~~~-~~~--------------------  271 (417)
T PF00501_consen  213 SALLAALFSGATLVLPSPFDLFDPESLLELISRYKPTILFAVPSMLEALLQSPEEK-TKI--------------------  271 (417)
T ss_dssp             HHHHHHHHCTSEEEEESSHHHHHHHHHHHHHHHHTESEEEEEHHHHHHHHHHHHTT-HHG--------------------
T ss_pred             ccccccccccccccccccccccccccchhccccccccccccccccccccccccccc-ccc--------------------
Confidence            568889999999999986 2   467899999999999999999999987622111 000                    


Q ss_pred             hCCCCCCcchhhhHHHHHHHHHHhCCcEeEEEEccCCCCHHHHHHHHHhcCC-ceeeecCCCCCCCceeccc-CCCcccc
Q 006111          358 MGYKQREASPLADLLAFRKVKARLGGRLRLVISGGAPLSTEVEEFLRVTCCA-FLVQGYGLTETCGPTTVCF-PDEMCMV  435 (660)
Q Consensus       358 ~~~~~~~~~~~~~~~~~~~~~~~~~~~lr~i~~~G~~l~~~~~~~~~~~~~~-~v~~~YG~tE~~~~~~~~~-~~~~~~~  435 (660)
                                  ...        .++++|.++++|+++++++.+.+++.++. ++++.||+||++.+++... .......
T Consensus       272 ------------~~~--------~l~~lr~v~~~G~~l~~~~~~~~~~~~~~~~i~~~YG~tE~~~~~~~~~~~~~~~~~  331 (417)
T PF00501_consen  272 ------------SKK--------DLSSLRTVISGGEPLPPDLLRRLRKAFGNAPIINLYGSTETGSIATIRPPEDDIEKP  331 (417)
T ss_dssp             ------------TTT--------TGTT-SEEEEESST-CHHHHHHHHHHHTTSEEEEEEEEGGGSSEEEEEETTTHHSST
T ss_pred             ------------ccc--------ccccccccccccccCChhhccccccccccccceecccccccceeeeccccccccccc
Confidence                        000        11479999999999999999999999987 9999999999999988664 3333455


Q ss_pred             CccCCCccCeeEEeeecCCCCCCCCCCCCCceEEEccCCcccccCCCchhhhhcccC-CccccCceEEECCCCcEEEEec
Q 006111          436 GTAGPVSVYSELRLEEVPEMGYSPLDDPPCGEVCVRGKTLFSGYYKNPDLTRESIID-GWFHTGDIGQILPNGVVKIIDR  514 (660)
Q Consensus       436 ~~~G~~~~~~~v~ivd~~~~~~~~~~~~~~Gei~v~g~~~~~gy~~~~~~~~~~~~~-g~~~TGDl~~~~~~G~l~~~GR  514 (660)
                      +++|.|+++++++|+| ++++ .+++.|+.|||+|+||+++.||+++++.+.+.|.+ |||+|||+|++|+||.|+++||
T Consensus       332 ~~~G~~~~~~~~~ivd-~~~~-~~~~~g~~Gei~i~~~~~~~gy~~~~~~~~~~~~~~~~~~TGD~g~~d~~G~~~~~GR  409 (417)
T PF00501_consen  332 GSVGKPLPGVEVKIVD-PNTG-EPLPPGEPGEIVIRGPNVFSGYYNDPELTAEAFIDDGWYRTGDLGRLDEDGYLYILGR  409 (417)
T ss_dssp             TSEBEESTTEEEEEEC-TTTS-SBESTTSEEEEEEESTTSBSEETTBHHHHHHHEETTSEEEEEEEEEEETTSEEEEEEE
T ss_pred             cccccccccccccccc-cccc-ccccccccccccccCCccceeeeccccccccccccccceecceEEEECCCCeEEEEEe
Confidence            8899999999999999 6522 33456688999999999999999999999999954 8999999999999999999999


Q ss_pred             cCCeeEcC
Q 006111          515 KKNLIKIS  522 (660)
Q Consensus       515 ~~d~i~~~  522 (660)
                      .||+||+|
T Consensus       410 ~~~~i~~~  417 (417)
T PF00501_consen  410 SDDMIKVR  417 (417)
T ss_dssp             GSCEEEET
T ss_pred             eCCEEEeC
Confidence            99999963

This region is a Ser/Thr/Gly-rich domain that is further characterised by a conserved Pro-Lys-Gly triplet. The family of enzymes includes luciferase, long chain fatty acid Co-A ligase, acetyl-CoA synthetase and various other closely-related synthetases.; GO: 0003824 catalytic activity, 0008152 metabolic process; PDB: 2V7B_A 2Y4O_B 2VSQ_A 3L8C_B 1RY2_A 3KXW_A 3LNV_A 3ETC_B 3A9U_A 3A9V_A ....

>KOG1179 consensus Very long-chain acyl-CoA synthetase/fatty acid transporter [Lipid transport and metabolism]

Probab=100.00  E-value=9e-52  Score=414.64  Aligned_cols=501  Identities=19%  Similarity=0.168  Sum_probs=383.7

Q ss_pred             CCCCcHHHHHHHHHHhCCCCCceeeeccccCCCCCceEEeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEeCCchhHHHHH
Q 006111           39 SDLNTAWDIFSMSVQKYPGNRMLGWRPFVDGKFGPYVWKTYKEVYEEVLQIVSALRASGAEPGCRVGIYGANCPQWVEAM  118 (660)
Q Consensus        39 ~~~~ti~~~l~~~a~~~pd~~a~~~~~~~d~~~~~~~~~Ty~ql~~~v~~lA~~L~~~Gl~~gd~V~l~~~n~~e~~~~~  118 (660)
                      -...+++++|..+++++|+++|+++.   +.    .+++||+|+.+.++++|++|+.+|++.||.|+++|+|.+|+++++
T Consensus        74 r~~~ti~~~F~~~vrr~p~k~aii~~---~~----~~~~Tf~e~~~~s~~~A~~~~~~~l~~GD~VAL~men~pefv~lW  146 (649)
T KOG1179|consen   74 RERRTIAELFLSQVRRQPDKPAIIYE---GP----FQSLTFAELDARSNRVANYLHAEGLKAGDVVALLMENRPEFVALW  146 (649)
T ss_pred             ccCCcHHHHHHHHHHhCCCccEEEEe---CC----CceeeHHHHHHHHHHHHHHHHHhhcccCCEEEEecCCChhHHHHH
Confidence            34579999999999999999999997   33    268999999999999999999999999999999999999999999


Q ss_pred             HHHHhCCCeEEecCCCCChhHHHHHHhcccceEEEEccchhhhhhccccccccCccEEEEecCCcHHHHHHHhhCCccee
Q 006111          119 EACNALSLICVPLYDTLGPGAVNFILDHAEIDFVFVQDKKVKELLSPDCRSAQRLRVMVCFTSLTAEQKEMAVQTGIKPY  198 (660)
Q Consensus       119 lA~~~~G~~~vpl~~~~~~~~l~~~l~~~~~~~ii~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~  198 (660)
                      |+++++|++...||.++..+.+.+.|+.++++++|++.+....+.+.........-.++..+....         .....
T Consensus       147 lGLaKlGv~tA~iNtNlR~~~LlHsi~~s~aralv~~~el~~~~~e~~~~l~~~~i~~~~~~~~~~---------~~g~~  217 (649)
T KOG1179|consen  147 LGLAKLGVITAFINTNLRGEPLLHSITVSGARALVVGPELLNALEEILPLLIKNGIHVFSLGPTSV---------PDGIE  217 (649)
T ss_pred             HhHHhhCceeeeeccccccchhhhhhhhcCceEEEECHHHHHHHHhcchhhhhccceEEecCCCCC---------CchHH
Confidence            999999999999999999999999999999999999999888776653222112122333322211         01111


Q ss_pred             eHHHHHhcCccCC---ccCCCCCCCceEEEEecCCCCCCCceeeecchhHHHHhhhhhhhcccccCCCCCCcEEEEecCh
Q 006111          199 SWDEFLHLGKVNE---MEILPPQPFNICTIMYTSGTSGDPKGVVLTHETIATFVSGVDLFLDQFEDKMTVDDVYLSFLPL  275 (660)
Q Consensus       199 ~~~~~~~~~~~~~---~~~~~~~~~~~~~i~~TSGTTG~pK~v~~th~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~pl  275 (660)
                      ++...++.....+   .........++++++|||||||.||+.++||......+..+...+     +++.+|+++..+|+
T Consensus       218 ~L~~~l~~~~~~~vp~~~~~~~~~~s~~lyIYTSGTTGLPKaAvith~r~~~~a~g~~~~~-----g~~~~DvvY~~lPL  292 (649)
T KOG1179|consen  218 SLLAKLSAAPKHPVPVSTRSGLTFRSPLLYIYTSGTTGLPKAAVITHLRYLQGAAGFYYVF-----GMTADDVVYTTLPL  292 (649)
T ss_pred             HHHHhhcccccCCCCcccCCCccccceeEEEEcCCCCCCCHHHHHHHHHHHHHHHHHHHHh-----CCCccceEEEcchh
Confidence            2222232222222   122344678999999999999999999999999888887666677     99999999999999


Q ss_pred             hHHHHHHH-HHHHhhcCcEEEEecC-ChhhHHHHhhhhcCeEEEechHHHHHHHHHHHHHHHhhchHHHHHHHHHHHHHH
Q 006111          276 AHILDRVI-EEYFFRRGASVGYYHG-DLNALRDDLMELKPTLLAGVPRVFEKIHEGIKKALEELRPLRRRIFDALYKYKL  353 (660)
Q Consensus       276 ~~~~g~~~-~l~~l~~G~~~v~~~~-~~~~~~~~i~~~~~t~~~~~p~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~  353 (660)
                      +|..+.++ +..++..|+|+|+-.. +...|++...+|++|++...-.+.+.|++......++.+               
T Consensus       293 YHsaa~ilGi~~~l~~GaT~VlrkKFSAS~FW~DC~k~~~Tv~QYIGElcRYLl~~p~~~~er~H---------------  357 (649)
T KOG1179|consen  293 YHSAAGILGIGGCLLHGATVVLRKKFSASNFWDDCRKYNVTVIQYIGELCRYLLNQPPSPEERQH---------------  357 (649)
T ss_pred             HHHHHHHHHHHHHHhcCceEEEecccchhhhHHHHHHhCCeeeehHHHHHHHHHcCCCChhhcCc---------------
Confidence            99998887 6778999999999886 999999999999999999999999998765433322221               


Q ss_pred             HHHhhCCCCCCcchhhhHHHHHHHHHHhCCcEeEEEEccCCCCHHHHHHHHHhcCCc-eeeecCCCCCCCceecccCCCc
Q 006111          354 AWMNMGYKQREASPLADLLAFRKVKARLGGRLRLVISGGAPLSTEVEEFLRVTCCAF-LVQGYGLTETCGPTTVCFPDEM  432 (660)
Q Consensus       354 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lr~i~~~G~~l~~~~~~~~~~~~~~~-v~~~YG~tE~~~~~~~~~~~~~  432 (660)
                                                    .+|..+  |..+.++.++.|.+.||.+ |.+.||+||+....... .+  
T Consensus       358 ------------------------------kVRla~--GNGLR~diW~~Fv~RFg~~~IgE~YgaTEgn~~~~N~-d~--  402 (649)
T KOG1179|consen  358 ------------------------------KVRLAY--GNGLRPDIWQQFVKRFGIIKIGEFYGATEGNSNLVNY-DG--  402 (649)
T ss_pred             ------------------------------eEEEEe--cCCCCchHHHHHHHHcCCCeEEEEeccccCcceeeee-cC--
Confidence                                          455544  5669999999999999876 99999999987654433 21  


Q ss_pred             cccCccCCC------ccCeeEEeeec--------CCCCCCCCCCCCCceEEEc--cCCc---ccccCCCchhhhhc----
Q 006111          433 CMVGTAGPV------SVYSELRLEEV--------PEMGYSPLDDPPCGEVCVR--GKTL---FSGYYKNPDLTRES----  489 (660)
Q Consensus       433 ~~~~~~G~~------~~~~~v~ivd~--------~~~~~~~~~~~~~Gei~v~--g~~~---~~gy~~~~~~~~~~----  489 (660)
                       ..|.+|+.      +--.++.-+|.        ++|-..+++.||.|.+.-+  ....   |.||.++.+.+.+.    
T Consensus       403 -~vGA~G~~~~~~~~l~p~~LIk~D~~t~E~iRd~~G~Ci~~~~GEpGlLv~~i~~k~P~~~F~GY~g~~~~t~kKl~rD  481 (649)
T KOG1179|consen  403 -RVGACGFMSRLLKLLYPFRLIKVDPETGEPIRDSQGLCIPCPPGEPGLLVGKIVQKNPLRSFLGYAGPKKATEKKLLRD  481 (649)
T ss_pred             -ccccccchhhhhhhccceEEEEecCCCCceeecCCceEEECCCCCCceEEEEeccCCchhhhccccCchhhhhhhhHHh
Confidence             12333321      11122222221        3444456778899966432  2233   89999977666554    


Q ss_pred             -c--cCCccccCceEEECCCCcEEEEeccCCeeEcCCCeeecchhHHHHHhcCcCcceEEEEecCCC----CeEEEEEEc
Q 006111          490 -I--IDGWFHTGDIGQILPNGVVKIIDRKKNLIKISQGEYVALEYLENVYCVAPIIEDIWVYGDSLK----SMLVAVVVP  562 (660)
Q Consensus       490 -~--~~g~~~TGDl~~~~~~G~l~~~GR~~d~i~~~~G~~v~~~~iE~~l~~~p~V~~~~V~~~~~~----~~~~a~v~~  562 (660)
                       |  -|-||+|||+-.+|+.|++||.+|..|+... .|+||+..|||++|.....+.||.|+|+.-+    ..-.|.|+.
T Consensus       482 VFkkGD~~f~tGDlLv~D~~GylYF~DRtGDTFRW-KGENVsTtEVe~~l~~~~~~~dv~VYGV~VP~~EGRaGMAaI~~  560 (649)
T KOG1179|consen  482 VFKKGDVYFNTGDLLVADELGYLYFKDRTGDTFRW-KGENVSTTEVEDVLSALDFLQDVNVYGVTVPGYEGRAGMAAIVL  560 (649)
T ss_pred             hhccCcEEEeeCcEEEEecCCcEEEeccCCCceee-cCCcccHHHHHHHHhhhccccceeEEEEecCCccCccceEEEEe
Confidence             4  2459999999999999999999999999999 7999999999999999999999999996533    267777776


Q ss_pred             ChhhHHHHHHHCCCCCcHHHHhccHHHHHHHHHHHHHHHHhCCCCCceeeeEEEEecCCCCCCCCccccccccchHHHHH
Q 006111          563 CEEDTKKWAYSNGHAGSFLELCSLVQLQNYILSELKNAAERNKLRGFEHIKGVILDPRPFDMERDLVTATLKKKRNKLLI  642 (660)
Q Consensus       563 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~l~~~~~p~~i~~~~~~~~~~~~P~t~~GKv~R~~l~~  642 (660)
                      +++..                    .....+.+.+     ...||+|.+|..+-+.++      +++|.+-|.+|..|.+
T Consensus       561 ~p~~~--------------------~d~~~l~~~l-----~~~LP~YA~P~FlRl~~~------i~~TgTFKl~K~~L~~  609 (649)
T KOG1179|consen  561 DPTTE--------------------KDLEKLYQHL-----RENLPSYARPRFLRLQDE------IEKTGTFKLQKTELQK  609 (649)
T ss_pred             cCccc--------------------chHHHHHHHH-----HhhCccccchHHHHHHhh------hhcccchhhHHHHHHH
Confidence            66431                    1122233333     378999999998888744      5799999999998876


Q ss_pred             H
Q 006111          643 Y  643 (660)
Q Consensus       643 ~  643 (660)
                      .
T Consensus       610 e  610 (649)
T KOG1179|consen  610 E  610 (649)
T ss_pred             c
Confidence            4

>TIGR01733 AA-adenyl-dom amino acid adenylation domain

Probab=100.00  E-value=1.8e-50  Score=431.68  Aligned_cols=389  Identities=25%  Similarity=0.322  Sum_probs=325.2

Q ss_pred             eHHHHHHHHHHHHHHHHH-cCCCCCCEEEEEeCCchhHHHHHHHHHhCCCeEEecCCCCChhHHHHHHhcccceEEEEcc
Q 006111           78 TYKEVYEEVLQIVSALRA-SGAEPGCRVGIYGANCPQWVEAMEACNALSLICVPLYDTLGPGAVNFILDHAEIDFVFVQD  156 (660)
Q Consensus        78 Ty~ql~~~v~~lA~~L~~-~Gl~~gd~V~l~~~n~~e~~~~~lA~~~~G~~~vpl~~~~~~~~l~~~l~~~~~~~ii~~~  156 (660)
                      ||.||.+.++++|+.|.+ .|+++||+|+++++|+++++++++||+++|++++|+++.++.+.+..+++.+++++++++.
T Consensus         1 t~~~l~~~~~~~a~~l~~~~g~~~gd~v~l~~~n~~~~~~~~~a~~~~G~~~v~~~~~~~~~~~~~~l~~~~~~~ii~~~   80 (408)
T TIGR01733         1 TYRELDERANRLARHLRAAGGVGPGDRVAVLLERSAELVVAILAVLKAGAAYVPLDPAYPAERLAFILEDAGARLLLTDS   80 (408)
T ss_pred             CHHHHHHHHHHHHHHHHHhhCCCCCCEEEEEeCCCHHHHHHHHHHHHhCCEEEEcCCCCCHHHHHHHHHhcCCCEEEEcC
Confidence            799999999999999998 8999999999999999999999999999999999999999999999999999999999998


Q ss_pred             chhhhhhccccccccCccEEEEecCCcHHHHHHHhhCCcceeeHHHHHhcCccCCccCCCCCCCceEEEEecCCCCCCCc
Q 006111          157 KKVKELLSPDCRSAQRLRVMVCFTSLTAEQKEMAVQTGIKPYSWDEFLHLGKVNEMEILPPQPFNICTIMYTSGTSGDPK  236 (660)
Q Consensus       157 ~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~TSGTTG~pK  236 (660)
                      .....+.....       .++.++...                 ...................+++++++|||||||.||
T Consensus        81 ~~~~~~~~~~~-------~~~~~~~~~-----------------~~~~~~~~~~~~~~~~~~~~~~~~i~~TSGTtG~pK  136 (408)
T TIGR01733        81 ALASRLAGLVL-------PIILVDPLE-----------------LAALDDAPAPPPPDAPSGPDDLAYVIYTSGSTGRPK  136 (408)
T ss_pred             chhhhccccCC-------ceEEechhh-----------------hhhcccccccccccCCCCCCCcEEEEEcCCCCCCCC
Confidence            76665433211       111221110                 000000000011111145789999999999999999


Q ss_pred             eeeecchhHHHHhhhhhhhcccccCCCCCCcEEEEecChhHHHHHHHHHHHhhcCcEEEEecC----ChhhHHHHhhhhc
Q 006111          237 GVVLTHETIATFVSGVDLFLDQFEDKMTVDDVYLSFLPLAHILDRVIEEYFFRRGASVGYYHG----DLNALRDDLMELK  312 (660)
Q Consensus       237 ~v~~th~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~pl~~~~g~~~~l~~l~~G~~~v~~~~----~~~~~~~~i~~~~  312 (660)
                      +|.+||+++...+..+...+     .+..++++++..|++|.+++...+.++..|+++++.+.    .+..+.+.+++++
T Consensus       137 ~v~~s~~~~~~~~~~~~~~~-----~~~~~~~~~~~~p~~~~~~~~~~~~~l~~g~~~~~~~~~~~~~~~~~~~~~~~~~  211 (408)
T TIGR01733       137 GVVVTHRSLVNLLAWLARRY-----GLDPDDRVLQFASLSFDASVEEIFGTLLAGATLVVPPEDEERDAALLAALIAEHP  211 (408)
T ss_pred             EEEeccHHHHHHHHHHHHhc-----CCCCCceEEEecCCccchhHHHHHHHHhCCCEEEEcChhhccCHHHHHHHHHHcC
Confidence            99999999999998887766     78889999999999999998888999999999998876    2688999999999


Q ss_pred             CeEEEechHHHHHHHHHHHHHHHhhchHHHHHHHHHHHHHHHHHhhCCCCCCcchhhhHHHHHHHHHHhCCcEeEEEEcc
Q 006111          313 PTLLAGVPRVFEKIHEGIKKALEELRPLRRRIFDALYKYKLAWMNMGYKQREASPLADLLAFRKVKARLGGRLRLVISGG  392 (660)
Q Consensus       313 ~t~~~~~p~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lr~i~~~G  392 (660)
                      +|.++++|.+++.+.+...                                                ...+++|.+++||
T Consensus       212 ~t~l~~~p~~~~~l~~~~~------------------------------------------------~~~~~l~~v~~~g  243 (408)
T TIGR01733       212 VTVLNLTPSLLALLAAALP------------------------------------------------PALASLRLVILGG  243 (408)
T ss_pred             ceEEEeCHHHHHHHHHhhh------------------------------------------------hcccCceEEEEeC
Confidence            9999999999999876422                                                0114899999999


Q ss_pred             CCCCHHHHHHHHHhcC-CceeeecCCCCCCCceecccCCCcc----ccCccCCCccCeeEEeeecCCCCCCCCCCCCCce
Q 006111          393 APLSTEVEEFLRVTCC-AFLVQGYGLTETCGPTTVCFPDEMC----MVGTAGPVSVYSELRLEEVPEMGYSPLDDPPCGE  467 (660)
Q Consensus       393 ~~l~~~~~~~~~~~~~-~~v~~~YG~tE~~~~~~~~~~~~~~----~~~~~G~~~~~~~v~ivd~~~~~~~~~~~~~~Ge  467 (660)
                      +++++++.+.+.+.++ +.+++.||+||++.+++........    ...++|.|+++++++|++ +++.  ++..|+.||
T Consensus       244 ~~~~~~~~~~~~~~~~~~~i~~~YG~tE~g~~~~~~~~~~~~~~~~~~~~~G~~~~~~~~~i~~-~~~~--~~~~g~~Ge  320 (408)
T TIGR01733       244 EALTPALVDRWRARGPGARLINLYGPTETTVWSTATLVDADDAPRESPVPIGRPLANTRLYVLD-DDLR--PVPVGVVGE  320 (408)
T ss_pred             ccCCHHHHHHHHHhCCCcEEEecccCCceEEEEEEEEcCccccCCccccccCcccCCceEEEEC-CCCC--CCCCCCceE
Confidence            9999999999999997 8999999999999877543322211    157899999999999999 6644  445668999


Q ss_pred             EEEccCCcccccCCCchhhhhcccC-------C--ccccCceEEECCCCcEEEEeccCCeeEcCCCeeecchhHHHHHhc
Q 006111          468 VCVRGKTLFSGYYKNPDLTRESIID-------G--WFHTGDIGQILPNGVVKIIDRKKNLIKISQGEYVALEYLENVYCV  538 (660)
Q Consensus       468 i~v~g~~~~~gy~~~~~~~~~~~~~-------g--~~~TGDl~~~~~~G~l~~~GR~~d~i~~~~G~~v~~~~iE~~l~~  538 (660)
                      |+++|+.++.||+++++.+.+.|..       |  ||+|||+|++|++|++++.||.+|+|++ +|++++|.+||++|..
T Consensus       321 l~v~~~~~~~gy~~~~~~~~~~~~~~~~~~~~~~~~~~TGDl~~~d~~g~~~~~gR~~~~i~~-~G~~v~~~~ie~~l~~  399 (408)
T TIGR01733       321 LYIGGPGVARGYLNRPELTAERFVPDPFAGGDGARLYRTGDLVRYLPDGNLEFLGRIDDQVKI-RGYRIELGEIEAALLR  399 (408)
T ss_pred             EEecCccccccccCChhhhhcceeeCCCCCCCCceEEECCceEEEcCCCCEEEeeccCCEEEe-CeEEechHHHHHHHhc
Confidence            9999999999999999998888732       2  9999999999999999999999999997 8999999999999999


Q ss_pred             CcCcceEEE
Q 006111          539 APIIEDIWV  547 (660)
Q Consensus       539 ~p~V~~~~V  547 (660)
                      ||.|.+|+|
T Consensus       400 ~~~v~~~~v  408 (408)
T TIGR01733       400 HPGVREAVV  408 (408)
T ss_pred             CcchhhhcC
Confidence            999999875

This domain is a subset of the AMP-binding domain found in Pfam (pfam00501) which also hits substrate--CoA ligases and luciferases. Sequences scoring in between trusted and noise for this model may be ambiguous as to whether they activate amino acids or other molecules lacking an alpha amino group.

>PRK07824 O-succinylbenzoic acid--CoA ligase; Provisional

Probab=100.00  E-value=4.9e-43  Score=366.90  Aligned_cols=317  Identities=23%  Similarity=0.278  Sum_probs=256.6

Q ss_pred             CCCCCceEEEEecCCCCCCCceeeecchhHHHHhhhhhhhcccccCCCCCCcEEEEecChhHHHHHHHHHHHhhcCcEEE
Q 006111          216 PPQPFNICTIMYTSGTSGDPKGVVLTHETIATFVSGVDLFLDQFEDKMTVDDVYLSFLPLAHILDRVIEEYFFRRGASVG  295 (660)
Q Consensus       216 ~~~~~~~~~i~~TSGTTG~pK~v~~th~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~pl~~~~g~~~~l~~l~~G~~~v  295 (660)
                      ...++++++++|||||||.||+|+++|.++...+......       +...++++..+|++|..++...+.++..|++++
T Consensus        31 ~~~~~d~a~il~TSGTTG~PKgv~~s~~~l~~~~~~~~~~-------~~~~~~~~~~~p~~~~~g~~~~~~~l~~g~~~v  103 (358)
T PRK07824         31 EPIDDDVALVVATSGTTGTPKGAMLTAAALTASADATHDR-------LGGPGQWLLALPAHHIAGLQVLVRSVIAGSEPV  103 (358)
T ss_pred             CCCCCCeEEEEeCCCCCCCCCEEEecHHHHHHHHHHHHhc-------cCCCCeEEEECChHHHHHHHHHHHHHHcCCeEE
Confidence            3457899999999999999999999999998887765433       234578899999999999888888899999988


Q ss_pred             Eec----CChhhHHHHhhhhc--CeEEEechHHHHHHHHHHHHHHHhhchHHHHHHHHHHHHHHHHHhhCCCCCCcchhh
Q 006111          296 YYH----GDLNALRDDLMELK--PTLLAGVPRVFEKIHEGIKKALEELRPLRRRIFDALYKYKLAWMNMGYKQREASPLA  369 (660)
Q Consensus       296 ~~~----~~~~~~~~~i~~~~--~t~~~~~p~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  369 (660)
                      +..    .++..+++.+++++  .++...+|..+..+......                                     
T Consensus       104 ~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~p~~l~~~~~~~~~-------------------------------------  146 (358)
T PRK07824        104 ELDVSAGFDPTALPRAVAELGGGRRYTSLVPMQLAKALDDPAA-------------------------------------  146 (358)
T ss_pred             ecCcCCCcCHHHHHHHHHHhCCCceEEEecHHHHHHHHhCccc-------------------------------------
Confidence            732    28899999999998  56666778776654321000                                     


Q ss_pred             hHHHHHHHHHHhCCcEeEEEEccCCCCHHHHHHHHHhcCCceeeecCCCCCCCceecccCCCccccCccCCCccCeeEEe
Q 006111          370 DLLAFRKVKARLGGRLRLVISGGAPLSTEVEEFLRVTCCAFLVQGYGLTETCGPTTVCFPDEMCMVGTAGPVSVYSELRL  449 (660)
Q Consensus       370 ~~~~~~~~~~~~~~~lr~i~~~G~~l~~~~~~~~~~~~~~~v~~~YG~tE~~~~~~~~~~~~~~~~~~~G~~~~~~~v~i  449 (660)
                       ..        ..+++|.+++||+++++++.+.+.+ +++++++.||+||++..+           ...|.|++++++++
T Consensus       147 -~~--------~~~~l~~i~~gG~~l~~~~~~~~~~-~~~~v~~~YG~TE~~~~~-----------~~~G~~~~g~~v~i  205 (358)
T PRK07824        147 -TA--------ALAELDAVLVGGGPAPAPVLDAAAA-AGINVVRTYGMSETSGGC-----------VYDGVPLDGVRVRV  205 (358)
T ss_pred             -cC--------CcccceEEEECCCCCCHHHHHHHHh-cCCcEEecccCCccCCCc-----------CcCceeCCCCEEEe
Confidence             00        0138999999999999999998886 499999999999987543           23588999999998


Q ss_pred             eecCCCCCCCCCCCCCceEEEccCCcccccCCCchhhhhcc-cCCccccCceEEECCCCcEEEEeccCCeeEcCCCeeec
Q 006111          450 EEVPEMGYSPLDDPPCGEVCVRGKTLFSGYYKNPDLTRESI-IDGWFHTGDIGQILPNGVVKIIDRKKNLIKISQGEYVA  528 (660)
Q Consensus       450 vd~~~~~~~~~~~~~~Gei~v~g~~~~~gy~~~~~~~~~~~-~~g~~~TGDl~~~~~~G~l~~~GR~~d~i~~~~G~~v~  528 (660)
                      .+              |||+++|+.++.||++++...  .| .+|||+|||+|++ ++|.+++.||.||+|++ +|++|+
T Consensus       206 ~~--------------Gei~v~g~~~~~gY~~~~~~~--~~~~~g~~~TGDl~~~-~~g~l~i~GR~~d~i~~-~G~~v~  267 (358)
T PRK07824        206 ED--------------GRIALGGPTLAKGYRNPVDPD--PFAEPGWFRTDDLGAL-DDGVLTVLGRADDAIST-GGLTVL  267 (358)
T ss_pred             cC--------------CEEEEecCccccccCCCcccc--cccCCCceecccEEEE-eCCEEEEEeccCCeEEE-CCEEEC
Confidence            44              999999999999999987643  34 6789999999999 89999999999999997 899999


Q ss_pred             chhHHHHHhcCcCcceEEEEecCCC---CeEEEEEEcChhhHHHHHHHCCCCCcHHHHhccHHHHHHHHHHHHHHHHhCC
Q 006111          529 LEYLENVYCVAPIIEDIWVYGDSLK---SMLVAVVVPCEEDTKKWAYSNGHAGSFLELCSLVQLQNYILSELKNAAERNK  605 (660)
Q Consensus       529 ~~~iE~~l~~~p~V~~~~V~~~~~~---~~~~a~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~  605 (660)
                      |.+||++|.+||+|.+|+|++.++.   +.++++++...+..                        ...++|+++++ +.
T Consensus       268 p~eIE~~l~~~~~V~~~~vv~~~~~~~g~~~~a~v~~~~~~~------------------------~~~~~i~~~~~-~~  322 (358)
T PRK07824        268 PQVVEAALATHPAVADCAVFGLPDDRLGQRVVAAVVGDGGPA------------------------PTLEALRAHVA-RT  322 (358)
T ss_pred             HHHHHHHHHhCCCcceEEEEecCCCCCceEEEEEEEeCCCCC------------------------cCHHHHHHHHH-hh
Confidence            9999999999999999999997654   47888887665320                        01234444454 67


Q ss_pred             CCCceeeeEEEEecCCCCCCCCccccccccchHHHHHHHHH
Q 006111          606 LRGFEHIKGVILDPRPFDMERDLVTATLKKKRNKLLIYYQV  646 (660)
Q Consensus       606 l~~~~~p~~i~~~~~~~~~~~~P~t~~GKv~R~~l~~~~~~  646 (660)
                      |+.|++|..|++++      .+|+|++||++|++|+++|.+
T Consensus       323 l~~~~~P~~i~~v~------~lP~t~~GKi~r~~L~~~~~~  357 (358)
T PRK07824        323 LDRTAAPRELHVVD------ELPRRGIGKVDRRALVRRFAG  357 (358)
T ss_pred             CccccCCCEEEEec------CCCCCCCccccHHHHHHHhhc
Confidence            99999999999874      468999999999999998864

>COG1020 EntF Non-ribosomal peptide synthetase modules and related proteins [Secondary metabolites biosynthesis, transport, and catabolism]

Probab=100.00  E-value=2e-37  Score=350.03  Aligned_cols=416  Identities=22%  Similarity=0.225  Sum_probs=336.8

Q ss_pred             CCCCCCCCCcHHHHHHHHHHhCCCCCceeeeccccCCCCCceEEeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEeCCchh
Q 006111           34 FPSVDSDLNTAWDIFSMSVQKYPGNRMLGWRPFVDGKFGPYVWKTYKEVYEEVLQIVSALRASGAEPGCRVGIYGANCPQ  113 (660)
Q Consensus        34 ~~~~~~~~~ti~~~l~~~a~~~pd~~a~~~~~~~d~~~~~~~~~Ty~ql~~~v~~lA~~L~~~Gl~~gd~V~l~~~n~~e  113 (660)
                      .....+...++++.|...+.+.|+++|+.+.   +      .++||+++..+++++|..|.+.|+.+++.|+++++++++
T Consensus       219 ~~~~~~~~~~i~~~f~~~a~~~p~~~a~~~~---~------~~lty~el~~~a~~la~~l~~~g~~~~~~V~i~~~rs~~  289 (642)
T COG1020         219 LAAPIPLRLTIHLLFEEQAATTPDAVALVRG---G------QQLTYAELDARANRLARLLISLGVGPGETVAILADRSLE  289 (642)
T ss_pred             cccCCCccchHHHHHHHHHHhCCCceeEecC---C------CcccHHHHHHHHHHHHHHHHHcCCCCCCeEEEEcCCCHH
Confidence            3334444578999999999999999998764   2      479999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHhCCCeEEecCCCCChhHHHHHHhcccceEEEEccchhhhhhccccccccCccEEEEecCCcHHHHHHHhhC
Q 006111          114 WVEAMEACNALSLICVPLYDTLGPGAVNFILDHAEIDFVFVQDKKVKELLSPDCRSAQRLRVMVCFTSLTAEQKEMAVQT  193 (660)
Q Consensus       114 ~~~~~lA~~~~G~~~vpl~~~~~~~~l~~~l~~~~~~~ii~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~  193 (660)
                      +++.++|++++|+.++|++|.++.+++..+++.++++.+++...........     +.    +..+...          
T Consensus       290 ~i~~~l~ilkaG~~yvP~d~~~P~~r~~~~l~~~~~~~~~~~~~~~~~~~~~-----~~----~~~~~~~----------  350 (642)
T COG1020         290 LVVALLAVLKAGAAYVPLDPLYPAERLAYILEDSRPTLLLTQAHLRVDDVGL-----PG----LALDDAL----------  350 (642)
T ss_pred             HHHHHHHHHhcCCeEecCCCCChHHHHHHHHhhcCccEEEeccccccccccC-----Cc----ccccccc----------
Confidence            9999999999999999999999999999999999999999983322211000     00    1111100          


Q ss_pred             CcceeeHHHHHhcCccCCccCCCCCCCceEEEEecCCCCCCCceeeecchhHHHHhhhhhhhcccccCCCCCCcEEEEec
Q 006111          194 GIKPYSWDEFLHLGKVNEMEILPPQPFNICTIMYTSGTSGDPKGVVLTHETIATFVSGVDLFLDQFEDKMTVDDVYLSFL  273 (660)
Q Consensus       194 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~TSGTTG~pK~v~~th~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~  273 (660)
                                .... ..........+++.+|++|||||||.||||..+|+++.+.+......+     .+...|+++...
T Consensus       351 ----------~~~~-~~~~~~~~~~~~~~ayiiytsgstg~Pkgv~~~h~~~~~~~~~~~~~~-----~~~~~d~~l~~~  414 (642)
T COG1020         351 ----------SEIP-DTDPIPQALLGDALAYIIYTSGSTGQPKGVRIEHRALANLLNDAGARF-----GLDADDRVLALA  414 (642)
T ss_pred             ----------ccCC-ccCcccccCCCCCeEEEEEccCCCCCCCCceecCHHHHHHHHHHHHhc-----CCCcccEEeecC
Confidence                      0000 000012234568999999999999999999999999999777776666     888899999999


Q ss_pred             ChhHHHHHHHHHHHhhcCcEEEEecC----ChhhHHHHhhhhcCeEEEechHHHHHHHHHHHHHHHhhchHHHHHHHHHH
Q 006111          274 PLAHILDRVIEEYFFRRGASVGYYHG----DLNALRDDLMELKPTLLAGVPRVFEKIHEGIKKALEELRPLRRRIFDALY  349 (660)
Q Consensus       274 pl~~~~g~~~~l~~l~~G~~~v~~~~----~~~~~~~~i~~~~~t~~~~~p~~~~~l~~~~~~~~~~~~~~~~~~~~~~~  349 (660)
                      ++.+.......+.++..|+++++...    ++..+.+.+.++++|++..+|.++..+.......... .           
T Consensus       415 s~~fD~~~~~~f~~l~~G~~l~~~~~~~~~~~~~l~~~~~~~~vt~~~~~p~~~~~~~~~~~~~~~~-~-----------  482 (642)
T COG1020         415 SLSFDASVFEIFGALLEGARLVLAPALLQVDPAALLELLEAQGITVLLLVPLLLRLLLLAALAPDLI-S-----------  482 (642)
T ss_pred             CcccchhHHHHHHHHhCCCEEEecCccccCCHHHHHHHHHHcCCEEEEecHHHHHHHHhchhhcccc-C-----------
Confidence            99877777788999999999998875    8999999999999999999999998886531110000 0           


Q ss_pred             HHHHHHHhhCCCCCCcchhhhHHHHHHHHHHhCCcEeEEEEccCCCCHHHHHHHHHhc--CCceeeecCCCCCCCceecc
Q 006111          350 KYKLAWMNMGYKQREASPLADLLAFRKVKARLGGRLRLVISGGAPLSTEVEEFLRVTC--CAFLVQGYGLTETCGPTTVC  427 (660)
Q Consensus       350 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lr~i~~~G~~l~~~~~~~~~~~~--~~~v~~~YG~tE~~~~~~~~  427 (660)
                                                     ..+.+|.+++||+.++..+...+....  ...+.+.||+||+...+...
T Consensus       483 -------------------------------~~~~lr~~~~gGe~l~~~~~~~~~~~~~~~~~l~~~ygpTe~~~~~~~~  531 (642)
T COG1020         483 -------------------------------PCERLRQLLSGGEALPLALVQRLLQLAALARRLLNLYGPTEATLDAPSF  531 (642)
T ss_pred             -------------------------------CcccccEEEEcCCCCCHHHHHHHHHhccccceEeeccCccHHhhheeeE
Confidence                                           002489999999999999999887665  46899999999977766544


Q ss_pred             cCCCccc-cCccCCCccCeeEEeeecCCCCCCCCCCCCCceEEEccCCcccccCCCchhhhhcccC-CccccCceEEECC
Q 006111          428 FPDEMCM-VGTAGPVSVYSELRLEEVPEMGYSPLDDPPCGEVCVRGKTLFSGYYKNPDLTRESIID-GWFHTGDIGQILP  505 (660)
Q Consensus       428 ~~~~~~~-~~~~G~~~~~~~v~ivd~~~~~~~~~~~~~~Gei~v~g~~~~~gy~~~~~~~~~~~~~-g~~~TGDl~~~~~  505 (660)
                      ....... ...+|.|++++.+.|.| .....++++  ..||+++.|.++..||++++..+.+.|.. .+|+|||+++++.
T Consensus       532 ~~~~~~~~~~piG~p~~n~~~~ild-~~~~~~p~g--v~gel~i~g~~~a~gy~~~p~lt~~~f~~~~~y~tgD~~r~~~  608 (642)
T COG1020         532 PISAELESRVPIGRPVANTQLYILD-QGLRPLPLG--VPGELYIAGLGLALGYLNRPDLTAERFIALRLYRTGDLARPLA  608 (642)
T ss_pred             EcccccCCCCCcceeeCCCeEEEEC-CCCCcCCCC--CCeeeEECCcchhhhhcCChhhhHHHhhhccCccCCCeeeECC
Confidence            4322211 36899999999999999 656555554  68999999999999999999999999955 4999999999999


Q ss_pred             CCcEEEEeccCCeeEcCCCeeecchhHHHHHhcCc
Q 006111          506 NGVVKIIDRKKNLIKISQGEYVALEYLENVYCVAP  540 (660)
Q Consensus       506 ~G~l~~~GR~~d~i~~~~G~~v~~~~iE~~l~~~p  540 (660)
                      +|.+.++||.|+++|+ .|++|.+.+||..+.++|
T Consensus       609 dg~~e~lgr~D~qvki-~g~Riel~eie~~l~~~~  642 (642)
T COG1020         609 DGALEYLGRKDSQVKI-RGFRIELGEIEAALAEQP  642 (642)
T ss_pred             CCeEEEeccccceeEe-ceEecCcHHHHHHHhcCC
Confidence            9999999999999998 699999999999998875

>KOG3628 consensus Predicted AMP-binding protein [General function prediction only]

Probab=100.00  E-value=3e-36  Score=320.91  Aligned_cols=516  Identities=15%  Similarity=0.136  Sum_probs=364.9

Q ss_pred             CcHHHHHHHHHHhCCCCCceeeeccccCCCCCceEEeHHHHHHHHHHHHHHHHHc-CCCCCCEEEEEeCCchhHHHHHHH
Q 006111           42 NTAWDIFSMSVQKYPGNRMLGWRPFVDGKFGPYVWKTYKEVYEEVLQIVSALRAS-GAEPGCRVGIYGANCPQWVEAMEA  120 (660)
Q Consensus        42 ~ti~~~l~~~a~~~pd~~a~~~~~~~d~~~~~~~~~Ty~ql~~~v~~lA~~L~~~-Gl~~gd~V~l~~~n~~e~~~~~lA  120 (660)
                      .+|.|+|++++.++||.+|+...   +..+..-.++||.+|..++++++.+|..+ .+++||+|++++++++|++++++|
T Consensus       770 ~~ile~Lq~R~a~tp~~~a~~~~---n~~~~~~~~~Tw~~f~krva~i~~~l~~k~~lk~Gd~V~Lmy~~sie~vaa~~~  846 (1363)
T KOG3628|consen  770 LTILEILQWRAAKTPDHIAFTTL---NARGATKKTLTWAQFHKRVARIAEYLQDKGHLKAGDHVVLMYPPSIEFVAAIYA  846 (1363)
T ss_pred             HHHHHHHHHHhhcCCCceEEEEe---ccCCcccceeEHHHHHHHHHHHHHHHHhcccCCCCCeEEEEcCChHHHHHHHHH
Confidence            88999999999999999999988   78778888999999999999999999977 599999999999999999999999


Q ss_pred             HHhCCCeEEecCCCCCh------hHHHHHHhcccceEEEEccchhhhhhccccccccCcc---EEEEecCCcHHHHHHHh
Q 006111          121 CNALSLICVPLYDTLGP------GAVNFILDHAEIDFVFVQDKKVKELLSPDCRSAQRLR---VMVCFTSLTAEQKEMAV  191 (660)
Q Consensus       121 ~~~~G~~~vpl~~~~~~------~~l~~~l~~~~~~~ii~~~~~~~~~~~~~~~~~~~~~---~i~~~~~~~~~~~~~~~  191 (660)
                      |+.+|.+++|+.|....      ..+..+++.+++..|+++......+.+.......+..   .++..++...       
T Consensus       847 Cly~GliPIpv~p~~~s~l~~~l~~~~~ii~~~kv~ailv~~~v~~lLrsr~~s~~~~~s~~p~i~~~~~~~~-------  919 (1363)
T KOG3628|consen  847 CLYLGLIPIPVPPPHASNLIEDLPTFRMIIKVYKVAAILVDQKVLKLLRSREASAHVDQSAIPLILVLPKLPE-------  919 (1363)
T ss_pred             HHhcCeeeeccCCccHHhhhhhhHHHHHHHHHhhhheEEecHHHHHHHhhhhHHHHhhhhcchhhhcccccch-------
Confidence            99999999999876543      3578899999999999998876655443322111111   1222222211       


Q ss_pred             hCCcceeeHHHHHhcCcc--CCccCCCCCCCceEEEEecCCCCCCCceeeecchhHHHHhhhhhhhcccccCCCCCCcEE
Q 006111          192 QTGIKPYSWDEFLHLGKV--NEMEILPPQPFNICTIMYTSGTSGDPKGVVLTHETIATFVSGVDLFLDQFEDKMTVDDVY  269 (660)
Q Consensus       192 ~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~i~~TSGTTG~pK~v~~th~~l~~~~~~~~~~~~~~~~~~~~~~~~  269 (660)
                             +|..-.+.-..  ...+..-...+.+|++.+.--++|+--++.++|.++++.|...+..+     .+.++.-+
T Consensus       920 -------t~~k~~~~~~k~~~~~~~g~~~k~~~a~v~~~~~~dg~l~~~~msHsslla~Ck~iKe~~-----~l~~~rpl  987 (1363)
T KOG3628|consen  920 -------TIRKRKKNIKKLNTPTPPGLNNKETPALVWFNVSTDGMLIGVKMSHSSLLAFCKIIKETC-----QLYKSRPL  987 (1363)
T ss_pred             -------hhhhhhhhhhccCCCCCccccCCCceEEEEEEecCCcceeeeeccHHHHHHHHHHHHHHH-----ccccCCce
Confidence                   11111111111  12222334678899999999999999999999999999999999988     77777777


Q ss_pred             EEecChhHHHHHH-HHHHHhhcCcEEEEecC-----ChhhHHHHhhhhcCeEEEechHHHHHHHHHHHHHHHhhchHHHH
Q 006111          270 LSFLPLAHILDRV-IEEYFFRRGASVGYYHG-----DLNALRDDLMELKPTLLAGVPRVFEKIHEGIKKALEELRPLRRR  343 (660)
Q Consensus       270 l~~~pl~~~~g~~-~~l~~l~~G~~~v~~~~-----~~~~~~~~i~~~~~t~~~~~p~~~~~l~~~~~~~~~~~~~~~~~  343 (660)
                      +.+.+.+.+.|+. +++..+|.|.+.+++++     ++..|+..|+++++.-++.+-..+..+.+......+...     
T Consensus       988 ~~~~~~~sGlgf~~wcLlgVysGh~T~Li~p~~l~nnpsLll~~i~~~kvkDt~~~~~tln~c~~~l~t~~enl~----- 1062 (1363)
T KOG3628|consen  988 LGCSSPYSGLGFNHWCLLGVYSGHPTLLISPMDLENNPSLLLQIISQYKVKDTYPTYSTLNLCQKGLETSVENLS----- 1062 (1363)
T ss_pred             EEEecCccchhHHHHHHHHHHcCCceeecCHHHhhcCHHHHHHHHhcccccccchhHHHHHHHHhccccccchhh-----
Confidence            7777777777776 58899999999988875     899999999999999999988888777654332211111     


Q ss_pred             HHHHHHHHHHHHHhhCCCCCCcchhhhHHHHHHHHHHhCCcEeEEEEccCCCCHHHHHHHHHhc---CC---ceeeecCC
Q 006111          344 IFDALYKYKLAWMNMGYKQREASPLADLLAFRKVKARLGGRLRLVISGGAPLSTEVEEFLRVTC---CA---FLVQGYGL  417 (660)
Q Consensus       344 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lr~i~~~G~~l~~~~~~~~~~~~---~~---~v~~~YG~  417 (660)
                                               ....+.        ++ ..++..-++....+...|.+.+   |.   .+.-.|+.
T Consensus      1063 -------------------------~~gnn~--------s~-s~vv~~~~RPr~ali~sf~klfa~igLsp~avStsys~ 1108 (1363)
T KOG3628|consen 1063 -------------------------KRGNNT--------SS-SIVVPAEERPRIALIASFKKLFAAIGLSPRAVSTSYSS 1108 (1363)
T ss_pred             -------------------------hhhccc--------cc-ceeeecCCccHHHHHHHHHHHHHHcCCChhhhcccccc
Confidence                                     000011        12 3344444555555666555544   21   12222322


Q ss_pred             -------------CCCCCceec-------------ccCCCccccCccCCCccCeeEEeeecCCCCCCCCCCCCCceEEEc
Q 006111          418 -------------TETCGPTTV-------------CFPDEMCMVGTAGPVSVYSELRLEEVPEMGYSPLDDPPCGEVCVR  471 (660)
Q Consensus       418 -------------tE~~~~~~~-------------~~~~~~~~~~~~G~~~~~~~v~ivd~~~~~~~~~~~~~~Gei~v~  471 (660)
                                   .|-.....-             ...+........|...+++++.|++ |+.. .++.+|+.||||++
T Consensus      1109 r~Np~Ic~r~~sg~~Pt~~y~D~raLR~grV~~ve~~ap~~l~L~dSG~~~~~~~i~Ivn-PEtk-~pc~dge~GEIW~~ 1186 (1363)
T KOG3628|consen 1109 RVNPFICLRSYSGPEPTTVYLDARALREGRVRLVEVGAPHSLLLYDSGKLPVYTDIAIVN-PETK-GPCRDGELGEIWVN 1186 (1363)
T ss_pred             cCChHhhhccccCCCCcceeechhhhhccceeeeecCCCCccccccCCcccccceeEEeC-Cccc-cccccCCcceEEec
Confidence                         121111000             0000111223568888999999999 6655 67888899999999


Q ss_pred             cCCcccccCCCch-hhhhcc----------cCCccccCceEEEC------CCC----cEEEEeccCCeeEcCCCeeecch
Q 006111          472 GKTLFSGYYKNPD-LTRESI----------IDGWFHTGDIGQIL------PNG----VVKIIDRKKNLIKISQGEYVALE  530 (660)
Q Consensus       472 g~~~~~gy~~~~~-~~~~~~----------~~g~~~TGDl~~~~------~~G----~l~~~GR~~d~i~~~~G~~v~~~  530 (660)
                      |.+-+.+|++-.+ .....|          ..+|.||||+|++.      .+|    -||++|-.++.+.+ +|.+.+|.
T Consensus      1187 S~hnA~~~~~~~d~~~~~~fn~rl~~g~~~~~sy~RTG~LGFl~~t~~t~~~~e~~~~LyVlG~i~EtlEl-~GL~h~p~ 1265 (1363)
T KOG3628|consen 1187 SAHNASCSFTIGDELRSNHFNARLSSGDLLGKSYARTGDLGFLRRTSLTDANVERHDLLYVLGAIDETLEL-NGLRHFPS 1265 (1363)
T ss_pred             cccccccccccCchhhhhhhhhhccccccccccceeeeeeeeeeeeecccccceeeeeEEEeecccceeee-cCcccCcc
Confidence            9999888775321 222222          13599999999984      223    59999999999999 79999999


Q ss_pred             hHHHHH-hcCcCcceEEEEecCCCCeEEEEEEcChhhHHHHHHHCCCCCcHHHHhccHHHHHHHHHHHHHHHHhCCCC-C
Q 006111          531 YLENVY-CVAPIIEDIWVYGDSLKSMLVAVVVPCEEDTKKWAYSNGHAGSFLELCSLVQLQNYILSELKNAAERNKLR-G  608 (660)
Q Consensus       531 ~iE~~l-~~~p~V~~~~V~~~~~~~~~~a~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~l~-~  608 (660)
                      +||..+ +.||.|.+|+|+..  .+.+|.+++...++.            +      .++.-.+-..        .|. +
T Consensus      1266 DIE~TV~~vH~~I~~cavF~~--~glvVvviE~~gq~~------------~------~~LvPlIv~~--------vL~eH 1317 (1363)
T KOG3628|consen 1266 DIETTVERVHPSIGGCAVFQA--TGLVVVVIECHGQQE------------L------ADLVPLIVNV--------VLEEH 1317 (1363)
T ss_pred             hHHHHHHHhcccccceeeEee--CCeEEEEEEecCchh------------H------hhhhHHHHHH--------HHhhc
Confidence            999999 68999999999985  456777777766321            1      1111122211        122 4


Q ss_pred             ceeeeEEEEecCCCCCCCCccccccccchHHHHHHH-HHHHHHHHh
Q 006111          609 FEHIKGVILDPRPFDMERDLVTATLKKKRNKLLIYY-QVEIDQLYE  653 (660)
Q Consensus       609 ~~~p~~i~~~~~~~~~~~~P~t~~GKv~R~~l~~~~-~~~i~~~y~  653 (660)
                      +.+.+.+.|++ +   +.+|+++.|..+|..+++.| .+.|+.+|.
T Consensus      1318 ~iI~dvV~fV~-~---G~~p~~~~gEK~R~~I~~~w~~~kL~~~~v 1359 (1363)
T KOG3628|consen 1318 YIILDVVAFVD-K---GVFPRNSRGEKQRAHILDSWLAGKLDPIYV 1359 (1363)
T ss_pred             ceEEEEEEEec-C---CccccCCchhhHHHHHHHHHHhcccceeee
Confidence            55667777776 3   88999999999999999988 557776663

>TIGR02372 4_coum_CoA_lig 4-coumarate--CoA ligase, photoactive yellow protein activation family

Probab=100.00  E-value=5.7e-36  Score=311.68  Aligned_cols=287  Identities=18%  Similarity=0.120  Sum_probs=221.4

Q ss_pred             CceEEEEecCCCCCCCceeeecchhHHHHhhhhhhhcccccCCC--CCCcEEEEecChhHHHHHHH-HHHHhhcCcEEEE
Q 006111          220 FNICTIMYTSGTSGDPKGVVLTHETIATFVSGVDLFLDQFEDKM--TVDDVYLSFLPLAHILDRVI-EEYFFRRGASVGY  296 (660)
Q Consensus       220 ~~~~~i~~TSGTTG~pK~v~~th~~l~~~~~~~~~~~~~~~~~~--~~~~~~l~~~pl~~~~g~~~-~l~~l~~G~~~v~  296 (660)
                      +..++++|||||||.||+|.+||+++.+.+..+...+     ++  ...+++++++|++|.+|+.. .+.++..|+++++
T Consensus        95 ~~~~~i~~TSGTTG~PKgV~~sh~~l~~~~~~~~~~~-----~~~~~~~dr~l~~~Pl~h~~g~~~~~l~~l~~G~~vv~  169 (386)
T TIGR02372        95 PTARFTFATSGSTGTPKPVTHSWAALLSEAQAIAKIL-----GERPPPVRRVISCVPAHHLYGFLFSCLLPSRRGLEAKQ  169 (386)
T ss_pred             CCceEEEECCCCCCCCceeEeeHHHHHHHHHHHHHHh-----CcCCCCCCeEEEeCCcHHHHHHHHHHHHHHHCCCeEEe
Confidence            5578999999999999999999999998887766655     44  34468999999999998765 5777889999988


Q ss_pred             ecC-ChhhHHHHhhhhcCeEEEechHHHHHHHHHHHHHHHhhchHHHHHHHHHHHHHHHHHhhCCCCCCcchhhhHHHHH
Q 006111          297 YHG-DLNALRDDLMELKPTLLAGVPRVFEKIHEGIKKALEELRPLRRRIFDALYKYKLAWMNMGYKQREASPLADLLAFR  375 (660)
Q Consensus       297 ~~~-~~~~~~~~i~~~~~t~~~~~p~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  375 (660)
                      ... ++..+++.++.+  |+++++|.+++.+.+..    .                                        
T Consensus       170 ~~~~~~~~~l~~i~~~--t~~~~~P~~l~~l~~~~----~----------------------------------------  203 (386)
T TIGR02372       170 LAAAPASGIMRHARPG--DLIVGTPFIWEQLADLD----Y----------------------------------------  203 (386)
T ss_pred             cCCCChHHHHHhhccC--CEEEECcHHHHHHHhhC----c----------------------------------------
Confidence            765 777888877654  89999999998875420    0                                        


Q ss_pred             HHHHHhCCcEeEEEEccCCCCHHHHHHHHHhcCC-ceeeecCCCCCCCceecccCCCccccCccCCCccCeeEEeeecCC
Q 006111          376 KVKARLGGRLRLVISGGAPLSTEVEEFLRVTCCA-FLVQGYGLTETCGPTTVCFPDEMCMVGTAGPVSVYSELRLEEVPE  454 (660)
Q Consensus       376 ~~~~~~~~~lr~i~~~G~~l~~~~~~~~~~~~~~-~v~~~YG~tE~~~~~~~~~~~~~~~~~~~G~~~~~~~v~ivd~~~  454 (660)
                           ..++++. ++||+++++++.+.+++. +. .++++||+||++++.+....      ++.|.++|+.++.+.+   
T Consensus       204 -----~l~slr~-i~gGa~l~~~l~~~~~~~-g~~~v~~~YG~TEt~~i~~~~~~------~~~~~~~p~~~~~~~~---  267 (386)
T TIGR02372       204 -----RLPGVVG-VSSGAPSTAATWRCLLAA-GLARLLEVYGATETGGIGLREAP------DDPFRLLPDLACFADT---  267 (386)
T ss_pred             -----CCCccee-EecCCCCCHHHHHHHHHh-cccchhheeccccccccccccCC------CCCcccCCCccccCCC---
Confidence                 0135675 678999999999999875 64 69999999999876543321      3456777776554311   


Q ss_pred             CCCCCCCCCCCceEEEccCCcccccCCCchhhhhcccCCccccCceEEECCCCcEEEEeccCCeeEcCCCeeecchhHHH
Q 006111          455 MGYSPLDDPPCGEVCVRGKTLFSGYYKNPDLTRESIIDGWFHTGDIGQILPNGVVKIIDRKKNLIKISQGEYVALEYLEN  534 (660)
Q Consensus       455 ~~~~~~~~~~~Gei~v~g~~~~~gy~~~~~~~~~~~~~g~~~TGDl~~~~~~G~l~~~GR~~d~i~~~~G~~v~~~~iE~  534 (660)
                      +.          +   .|+                  ..|++|||+|++|++|+|++.||.||+|++ +|++|+|.+||+
T Consensus       268 ~~----------~---~g~------------------~~~~~tgD~g~~d~~G~l~i~GR~dd~Ik~-~G~~V~p~eIE~  315 (386)
T TIGR02372       268 LS----------S---AGL------------------ARRLDLQDRLAWDKDGGFTILGRKDEILQV-GGVNVSPGHVRD  315 (386)
T ss_pred             cc----------C---CCc------------------cceeecCceEEEcCCCcEEEecccCCEEEE-CCEEEcHHHHHH
Confidence            10          0   021                  126889999999999999999999999997 899999999999


Q ss_pred             HHhcCcCcceEEEEecCCCCeEEEEEEcChhhHHHHHHHCCCCCcHHHHhccHHHHHHHHHHHHHHHHhCCCCCceeeeE
Q 006111          535 VYCVAPIIEDIWVYGDSLKSMLVAVVVPCEEDTKKWAYSNGHAGSFLELCSLVQLQNYILSELKNAAERNKLRGFEHIKG  614 (660)
Q Consensus       535 ~l~~~p~V~~~~V~~~~~~~~~~a~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~l~~~~~p~~  614 (660)
                      +|.+||+|.+|+|..  ..+.+.|+|++.++.                  ..    +.+.++|+++++ .+|+.|++|..
T Consensus       316 ~l~~~p~V~~~~v~~--~g~~~~a~vv~~~~~------------------~~----~~~~~~l~~~~~-~~L~~~~~P~~  370 (386)
T TIGR02372       316 ILERNPRVRAAAVRL--DGRRLKAFIVVAEDA------------------DE----AELEIELRATAA-RHLPAPARPDR  370 (386)
T ss_pred             HHHcCCCceEEEEEc--CCceEEEEEEECCCC------------------Ch----HHHHHHHHHHHH-HhCCCCCCCcE
Confidence            999999999999964  246788898887542                  11    122345556555 67999999999


Q ss_pred             EEEecCCCCCCCCccccccccc
Q 006111          615 VILDPRPFDMERDLVTATLKKK  636 (660)
Q Consensus       615 i~~~~~~~~~~~~P~t~~GKv~  636 (660)
                      +.+++      .+|+|++||++
T Consensus       371 i~~~~------~lP~t~~GKi~  386 (386)
T TIGR02372       371 FRFGT------ELPRTGAGKLA  386 (386)
T ss_pred             EEEcc------cCCCCCCCCcC
Confidence            99874      45899999985

Ectothiorhodospira halophila. This enzyme is designated 6.2.1.12 and therefore joins a number of plant enzymes linked to lignin biosynthesis and given similar names.

>TIGR02155 PA_CoA_ligase phenylacetate-CoA ligase

Probab=100.00  E-value=4.8e-33  Score=297.30  Aligned_cols=332  Identities=18%  Similarity=0.155  Sum_probs=230.5

Q ss_pred             CCCceEEEEecCCCCCCCceeeecchhHHHHhhhhhhhcccccCCCCCCcEEEEecChhHHHH-HHHHHHHhhcCcEEEE
Q 006111          218 QPFNICTIMYTSGTSGDPKGVVLTHETIATFVSGVDLFLDQFEDKMTVDDVYLSFLPLAHILD-RVIEEYFFRRGASVGY  296 (660)
Q Consensus       218 ~~~~~~~i~~TSGTTG~pK~v~~th~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~pl~~~~g-~~~~l~~l~~G~~~v~  296 (660)
                      +.++++.+++||||||.||++.+||.++..........+..  .++..+|++++..++.+..+ +...+.+...|++++.
T Consensus        73 ~~~~~~~~~~TSGTTG~Pk~v~~t~~~~~~~~~~~~~~~~~--~g~~~~d~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~  150 (422)
T TIGR02155        73 PREQVVRIHASSGTTGKPTVVGYTQNDIDTWSSVVARSIRA--AGGRPGDLIHNAYGYGLFTGGLGAHYGAEKLGCTVVP  150 (422)
T ss_pred             ChHHcEEEEECCCCCCCCeEeccCHHHHHHHHHHHHHHHHH--cCCCCCcEEEEccCccccchhHHHHHHHHHcCcEEEe
Confidence            45678899999999999999999999987665443322211  16778899888766544333 2234456778999887


Q ss_pred             ecC-ChhhHHHHhhhhcCeEEEechHHHHHHHHHHHHHHHhhchHHHHHHHHHHHHHHHHHhhCCCCCCcchhhhHHHHH
Q 006111          297 YHG-DLNALRDDLMELKPTLLAGVPRVFEKIHEGIKKALEELRPLRRRIFDALYKYKLAWMNMGYKQREASPLADLLAFR  375 (660)
Q Consensus       297 ~~~-~~~~~~~~i~~~~~t~~~~~p~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  375 (660)
                      .+. ++..+++.|++++||+++++|+++..|++.........                                      
T Consensus       151 ~~~~~~~~~~~~i~~~~~t~l~~~Ps~l~~L~~~~~~~~~~~--------------------------------------  192 (422)
T TIGR02155       151 ISGGQTEKQVQLIQDFKPDIIMVTPSYMLNLLEELKRMGIDP--------------------------------------  192 (422)
T ss_pred             cCCCCHHHHHHHHHHHCCCEEEEcHHHHHHHHHHHHHcCCCc--------------------------------------
Confidence            665 78999999999999999999999999876433210000                                      


Q ss_pred             HHHHHhCCcEeEEEEccCCCCHHHHHHHHHhcCCceeeecCCCCCCCc-eecccCCCccccCccCCCc--cCeeEEeeec
Q 006111          376 KVKARLGGRLRLVISGGAPLSTEVEEFLRVTCCAFLVQGYGLTETCGP-TTVCFPDEMCMVGTAGPVS--VYSELRLEEV  452 (660)
Q Consensus       376 ~~~~~~~~~lr~i~~~G~~l~~~~~~~~~~~~~~~v~~~YG~tE~~~~-~~~~~~~~~~~~~~~G~~~--~~~~v~ivd~  452 (660)
                           ...++|.++++|+++++++.+.+++.||+++++.||+||+++. +......     ...|.++  ++..++|+| 
T Consensus       193 -----~~~~lr~i~~~ge~l~~~~~~~i~~~~g~~v~~~YG~tE~~~~~~~~~~~~-----~~~g~~~~~~~~~~eivd-  261 (422)
T TIGR02155       193 -----AQTSLQVGIFGAEPWTNAMRKEIEARLGMKATDIYGLSEVIGPGVAMECVE-----TQDGLHIWEDHFYPEIID-  261 (422)
T ss_pred             -----ccCceEEEEEeCCcCCHHHHHHHHHHhCCceEecccchhhcCCceeecccc-----cCCCceEecCeeEEEEEC-
Confidence                 0038999999999999999999999999999999999998532 2221110     1122233  356778888 


Q ss_pred             CCCCCCCCCCCCCceEEEccCCcccccCCCchhhhhcccCCccccCceEEECCC-C-----cEEEEeccCCeeEcCCCee
Q 006111          453 PEMGYSPLDDPPCGEVCVRGKTLFSGYYKNPDLTRESIIDGWFHTGDIGQILPN-G-----VVKIIDRKKNLIKISQGEY  526 (660)
Q Consensus       453 ~~~~~~~~~~~~~Gei~v~g~~~~~gy~~~~~~~~~~~~~g~~~TGDl~~~~~~-G-----~l~~~GR~~d~i~~~~G~~  526 (660)
                      ++++ .+++.|+.|||++++.            +...|..+||+|||+++++++ |     .+++.||.+|+|++ +|.+
T Consensus       262 ~~~g-~~v~~Ge~Gelvvt~~------------~~~~~p~~ry~TGDl~~~~~~~Gr~~~~~~~i~GR~~d~i~~-~G~~  327 (422)
T TIGR02155       262 PHTG-EVLPDGEEGELVFTTL------------TKEALPVIRYRTRDLTRLLPGTARTMRRMDRITGRSDDMLII-RGVN  327 (422)
T ss_pred             CCCC-CCCCCCCeeEEEEecC------------CccccceeeEEcCcEEEEECCCCCcccccccccCccCCeEEE-CCEE
Confidence            5433 3446678999999973            233455789999999999765 4     46899999999997 7999


Q ss_pred             ecchhHHHHHhcCcCcc-eEEEEecCCC--CeEEEEEEcChhhHHHHHHHCCCCCcHHHHhccHHHHHHHHHHHHHHHHh
Q 006111          527 VALEYLENVYCVAPIIE-DIWVYGDSLK--SMLVAVVVPCEEDTKKWAYSNGHAGSFLELCSLVQLQNYILSELKNAAER  603 (660)
Q Consensus       527 v~~~~iE~~l~~~p~V~-~~~V~~~~~~--~~~~a~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~  603 (660)
                      |+|.+||.+|.+||+|. ++.+......  +.+++.|+...+...        .       ...+....+.++|.+.++ 
T Consensus       328 v~p~eie~~l~~~~~v~~~~q~~~~~~~~~~~~~~~v~~~~~~~~--------~-------~~~~~~~~~~~~i~~~~~-  391 (422)
T TIGR02155       328 VFPTQLEEVILKMDELSPHYQLELTRNGHMDELTLKVELKPESYT--------L-------RLHEQASLLAGEIQHTIK-  391 (422)
T ss_pred             ECHHHHHHHHHhCcCcCCCEEEEEEcCCCccEEEEEEEEecCccc--------c-------cchHHHHHHHHHHHHHHH-
Confidence            99999999999999998 5544433222  366776776643200        0       001122233445555554 


Q ss_pred             CCCCCceeeeEEEEecCCCCCCCCccccccccchH
Q 006111          604 NKLRGFEHIKGVILDPRPFDMERDLVTATLKKKRN  638 (660)
Q Consensus       604 ~~l~~~~~p~~i~~~~~~~~~~~~P~t~~GKv~R~  638 (660)
                      ..+..+.   .|.++.    ++.||+|+ ||++|.
T Consensus       392 ~~~~~~~---~v~~~~----~~~lp~~~-GK~~~~  418 (422)
T TIGR02155       392 QEVGVSM---DVHLVE----PGSLPRSE-GKARRV  418 (422)
T ss_pred             hccCcEE---EEEEEC----CCCccCCC-CCceEE
Confidence            4555542   355542    36789988 999874

Phenylacetate-CoA ligase (PA-CoA ligase) catalyzes the first step in aromatic catabolism of phenylacetic acid (PA) into phenylacetyl-CoA (PA-CoA). Often located in a conserved gene cluster with enzymes involved in phenylacetic acid activation (paaG/H/I/J), phenylacetate-CoA ligase has been found among the proteobacteria as well as in gram positive prokaryotes. In the B-subclass proteobacterium Azoarcus evansii, phenylacetate-CoA ligase has been shown to be induced under aerobic and anaerobic growth conditions. It remains unclear however, whether this induction is due to the same enzyme or to another isoenzyme restricted to specific anaerobic growth conditions.

>KOG1178 consensus Non-ribosomal peptide synthetase/alpha-aminoadipate reductase and related enzymes [Secondary metabolites biosynthesis, transport and catabolism]

Probab=99.97  E-value=4.2e-30  Score=284.10  Aligned_cols=520  Identities=19%  Similarity=0.127  Sum_probs=332.8

Q ss_pred             eeccccCCCCCCCC------CCCCcHHHHHHHHHHhCCCCCceeeeccccCCCCCceEEeHHHHHHHHHHHHHHHHHcCC
Q 006111           25 YRNLLASNGFPSVD------SDLNTAWDIFSMSVQKYPGNRMLGWRPFVDGKFGPYVWKTYKEVYEEVLQIVSALRASGA   98 (660)
Q Consensus        25 ~~~~~~~~~~~~~~------~~~~ti~~~l~~~a~~~pd~~a~~~~~~~d~~~~~~~~~Ty~ql~~~v~~lA~~L~~~Gl   98 (660)
                      +++......+|...      .-|.++.+.+...+...|.+++..+.+. ....+...++||++....++.+++.|...|.
T Consensus        13 ~~~~~~~d~~~d~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~p~-~~~~~~i~~~t~r~~~~~~n~~~q~l~~~~~   91 (1032)
T KOG1178|consen   13 LITYRQEDSLPDETKQIGFEQFMGTLEDSFRRELAEAPENTGHVIIPT-ASESGIIDSFTYRLIRLLSNIIAQFLVSLGS   91 (1032)
T ss_pred             eeccccccccCChhhhhhhhhhhcchhhHHHHHHhhcccCCCceEeec-ccccccccchhhhhhhcccchhHHHhhhccc
Confidence            34444444555322      3367888899999999999999987654 3344556789999999999999999999999


Q ss_pred             CCCCEEEEEeCCchhHHHHHHHHHhCCCeEEecCCCCC----hhHH---HHHHhcccceEEEEccchhhhhhcccccccc
Q 006111           99 EPGCRVGIYGANCPQWVEAMEACNALSLICVPLYDTLG----PGAV---NFILDHAEIDFVFVQDKKVKELLSPDCRSAQ  171 (660)
Q Consensus        99 ~~gd~V~l~~~n~~e~~~~~lA~~~~G~~~vpl~~~~~----~~~l---~~~l~~~~~~~ii~~~~~~~~~~~~~~~~~~  171 (660)
                      .+|+.|++++..+.++++..++++++|..+++++|.++    ++++   .+.+......++.-.+..     ........
T Consensus        92 ~~~~~v~i~~~~~~d~~v~v~~~~~~g~~~~~idp~~~~~e~~~~~~~ia~~~~s~~~~i~~~l~i~-----~~~~~~~~  166 (1032)
T KOG1178|consen   92 LRGTTVAIYMLPSVDLVVSVFAVLAAGLTFLPIDPSWPNSELAGYLMRIAHFLTSVELEIVRRLNII-----DILLNSLF  166 (1032)
T ss_pred             ccCceEEEeccCcCCeeeeeeehhhcceEEEEecCCCcccccchHHHhhhhhheeccceehhhhhhH-----HHHhhccc
Confidence            99999999999999999999999999999999999999    3321   222222211111100000     00000000


Q ss_pred             CccEEEEecCCcHHHHHHHhhCCcceeeH-HHHHhcCccCC-ccCCCCCCCceEEEEecCCCCCCCceeeecchhHHHHh
Q 006111          172 RLRVMVCFTSLTAEQKEMAVQTGIKPYSW-DEFLHLGKVNE-MEILPPQPFNICTIMYTSGTSGDPKGVVLTHETIATFV  249 (660)
Q Consensus       172 ~~~~i~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~-~~~~~~~~~~~~~i~~TSGTTG~pK~v~~th~~l~~~~  249 (660)
                      ....                     .... +.+........ .......+|..+++.||||+||.||+|..+|..++.+.
T Consensus       167 ~~~s---------------------v~~~~~~f~~~~~~~~~r~~~~~~~ds~~~l~~tSgs~G~pk~v~~~~~sl~~~f  225 (1032)
T KOG1178|consen  167 PKLS---------------------VETIADSFQMVLHNEDTREIRVGGNDSTALLSFTSGSTGVPKGVAGTHFSLANAF  225 (1032)
T ss_pred             cccc---------------------hhhccchhhhhhccCCCcceeeecccccceEeecccccccccccchhHHHHHhhh
Confidence            0000                     0000 11111111111 11223467789999999999999999999999999999


Q ss_pred             hhhhhhcccccCCCCCCcEEEEecChhHHHHHHHHHHH-hhcCcEEEEecC----ChhhHHHHhhhhcCeEEEechHHHH
Q 006111          250 SGVDLFLDQFEDKMTVDDVYLSFLPLAHILDRVIEEYF-FRRGASVGYYHG----DLNALRDDLMELKPTLLAGVPRVFE  324 (660)
Q Consensus       250 ~~~~~~~~~~~~~~~~~~~~l~~~pl~~~~g~~~~l~~-l~~G~~~v~~~~----~~~~~~~~i~~~~~t~~~~~p~~~~  324 (660)
                      .+....+     .++.++++-.....+..........+ +..|..+..+..    ++..+...+++++++..+.+|++.+
T Consensus       226 dw~~~~f-----~~t~s~~~~~~~~~~~~d~i~~~~~~~L~~~~~l~~p~~~~~~~~~~l~~~le~y~i~~~~~~~a~~~  300 (1032)
T KOG1178|consen  226 DWMFTTF-----PPTGSDRFTFKTSVYFDDTIQKFIGALLFNGNNLLVPTATIKDTPGQLASTLERYGITVSHLLPAMCQ  300 (1032)
T ss_pred             hhccccC-----CcCccchhhhhheeecccchHHHHhhHhhcCceeecccccCccchhhHHHHHHhhhheeeeechhhhh
Confidence            9877776     77777776322223222222233344 555555544432    5899999999999999999999998


Q ss_pred             HHHHHHHHHHHhhchHHHHHHHHHHHHHHHHHhhCCCCCCcchhhhHHHHHHHHHHhCCcEeEEEEccCCCCHHHHHHHH
Q 006111          325 KIHEGIKKALEELRPLRRRIFDALYKYKLAWMNMGYKQREASPLADLLAFRKVKARLGGRLRLVISGGAPLSTEVEEFLR  404 (660)
Q Consensus       325 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lr~i~~~G~~l~~~~~~~~~  404 (660)
                      +++.....-.....                               .....++.. ...+.|+..+.+|++....+...+.
T Consensus       301 ~l~~~~~~~~~~l~-------------------------------~~~~~~dl~-~~~~~Lkl~~~~~ep~~v~l~~s~~  348 (1032)
T KOG1178|consen  301 LLLAILTTSLPLLE-------------------------------HAFSLSDLL-TKRSCLKLVVLGGEPLLVSLYTSTF  348 (1032)
T ss_pred             hhhhhcCcchhhhh-------------------------------hhhhccccc-ccchhheeeeecCCccchhhhhhhh
Confidence            88764332100000                               000000000 0014899999999999999988666


Q ss_pred             HhcCC-ceeeecCCCCCCCceecccCCCc---c---ccC-------ccCCCccCeeEEeeecCCCCCCC--CCCCCCceE
Q 006111          405 VTCCA-FLVQGYGLTETCGPTTVCFPDEM---C---MVG-------TAGPVSVYSELRLEEVPEMGYSP--LDDPPCGEV  468 (660)
Q Consensus       405 ~~~~~-~v~~~YG~tE~~~~~~~~~~~~~---~---~~~-------~~G~~~~~~~v~ivd~~~~~~~~--~~~~~~Gei  468 (660)
                      ..+-. -...-|++++..+..+...-...   .   ...       .+|...   .+.+.. ..++...  ++.++.|.-
T Consensus       349 ~~~~~~~~~~~y~s~~~~~~~s~~~~~~s~~ll~~~~v~~~p~~~~~~~~~~---~~~~~~-~~~~~~~~~v~~~~l~~~  424 (1032)
T KOG1178|consen  349 DLLAEIFFGLPYLSTDPTGLVSYDDFSPSKVLLTNENVYSVPKFDSIIGSLT---VLESLY-RAGGEGEGGVGKGCLGAE  424 (1032)
T ss_pred             hcccceeeeecccCCCCccceeHHhhCcccceecceeEEeccchhhccCCCc---ceeeee-ccCcccCCcccceeeccc
Confidence            55522 12223888888776654332110   0   000       111111   112222 1111111  111222333


Q ss_pred             EEccCCcccccCCCchhhhhcc------cCCccccCceEEECCCCcEEEEeccCCeeEcCCCeeecchhHHHHHhcCcCc
Q 006111          469 CVRGKTLFSGYYKNPDLTRESI------IDGWFHTGDIGQILPNGVVKIIDRKKNLIKISQGEYVALEYLENVYCVAPII  542 (660)
Q Consensus       469 ~v~g~~~~~gy~~~~~~~~~~~------~~g~~~TGDl~~~~~~G~l~~~GR~~d~i~~~~G~~v~~~~iE~~l~~~p~V  542 (660)
                      +..+..+..|| ..++.....+      .+.+|+|||+|+..++|-+.+.||.|++||+ +|.++...+|+.++..||.|
T Consensus       425 ~~~~~~~~~g~-~~~~~~~~~~~~~d~~~~r~y~tgD~gr~l~ng~l~~~GR~d~qIK~-rG~Ri~L~ei~t~v~~~p~v  502 (1032)
T KOG1178|consen  425 QNLSSWVVDGY-STPENFLPNFLTVDGVKARIYRTGDNGRSLKNGGLEISGRADRQIKD-RGVRIELGELNTVVEVHPDV  502 (1032)
T ss_pred             ccccceeeccc-cchhhcCCcccccccchhhcccccccceeecCCCEEEEEeccceEEE-ccEEEehhhhchhhccCcch
Confidence            33334444442 2222222222      2448999999999899999999999999998 69999999999999999999


Q ss_pred             ceEEEEecCCC---CeEEEEEEcChhhHHHHHHHCCCCCcHHHHhccHHHHHHHHHHHHHHHHhCCCCCceeeeEEEEec
Q 006111          543 EDIWVYGDSLK---SMLVAVVVPCEEDTKKWAYSNGHAGSFLELCSLVQLQNYILSELKNAAERNKLRGFEHIKGVILDP  619 (660)
Q Consensus       543 ~~~~V~~~~~~---~~~~a~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~l~~~~~p~~i~~~~  619 (660)
                      .++++....++   +.++|||+...+.                   +..+    ...|+.+++ +.|+.|++|..++.+ 
T Consensus       503 ~~~itl~~~~~~~~~~l~aFvv~~~~~-------------------~~~~----~~~i~~~l~-~~La~y~vPs~~V~l-  557 (1032)
T KOG1178|consen  503 KEAITLARENSTVGQTLLAFVVERGGS-------------------KSVL----IRDIRNYLK-KELASYMLPSLVVPL-  557 (1032)
T ss_pred             hhhheeeeeccccCceEEEEEeccCCC-------------------Cchh----HHHHHHhhc-ccccceecceEEEEh-
Confidence            99999886544   4899999998764                   1122    445555554 889999999977775 


Q ss_pred             CCCCCCCCccccccccchHHHHHHH
Q 006111          620 RPFDMERDLVTATLKKKRNKLLIYY  644 (660)
Q Consensus       620 ~~~~~~~~P~t~~GKv~R~~l~~~~  644 (660)
                           +++|+|++||||+++|.+.+
T Consensus       558 -----~~vPl~~~GKvDkkaL~~~~  577 (1032)
T KOG1178|consen  558 -----AKVPLNPNGKVDKKALLEYN  577 (1032)
T ss_pred             -----hhCCcCCCCCcChhhhhhhh
Confidence                 56799999999999999833

>TIGR03335 F390_ftsA coenzyme F390 synthetase

Probab=99.95  E-value=1.3e-25  Score=239.94  Aligned_cols=257  Identities=18%  Similarity=0.138  Sum_probs=185.4

Q ss_pred             CCCceEEEEecCCCCCCCceeeecchhHHHHhhhhhhhcccccCCCCCCcEEEEecChhHHHHHHH-HHHHhhcCcEEEE
Q 006111          218 QPFNICTIMYTSGTSGDPKGVVLTHETIATFVSGVDLFLDQFEDKMTVDDVYLSFLPLAHILDRVI-EEYFFRRGASVGY  296 (660)
Q Consensus       218 ~~~~~~~i~~TSGTTG~pK~v~~th~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~pl~~~~g~~~-~l~~l~~G~~~v~  296 (660)
                      +.++++.+.+||||||.||++.+||.++..........+..  .++..+|+++...++.+..+... .+.+...|++++.
T Consensus        84 ~~~~i~~i~~TSGTTG~Pk~v~~T~~dl~~~~~~~~r~~~~--~G~~~gD~vl~~~~~~~~~g~~~~~~~~~~~Ga~vi~  161 (445)
T TIGR03335        84 DWKDIYTIHETSGTSGTPKSFFLTWDDWKRYAEKYARSFVS--QGFTAGDRMVICASYGMNVGANTMTLAAREVGMSIIP  161 (445)
T ss_pred             CHHHeEEEEeCCCCCCCcceeeecHHHHHHHHHHHHHHHHH--cCCCCCCeEEEEecCCcchhHHHHHHHHHHcCCEEEc
Confidence            45688899999999999999999999988766554433211  26788899999988877655443 4555778887654


Q ss_pred             ecCChhhHHHHhhhhcCeEEEechHHHHHHHHHHHHHHHhhchHHHHHHHHHHHHHHHHHhhCCCCCCcchhhhHHHHHH
Q 006111          297 YHGDLNALRDDLMELKPTLLAGVPRVFEKIHEGIKKALEELRPLRRRIFDALYKYKLAWMNMGYKQREASPLADLLAFRK  376 (660)
Q Consensus       297 ~~~~~~~~~~~i~~~~~t~~~~~p~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  376 (660)
                      .. .....++.|+++++|.+.++|+.+..|++.+.......                                       
T Consensus       162 ~~-~~~~~~~~i~~~~~t~l~~~ps~ll~La~~~~~~g~~~---------------------------------------  201 (445)
T TIGR03335       162 EG-KCTFPIRIIESYRPTGIVASVFKLLRLARRMKAEGIDP---------------------------------------  201 (445)
T ss_pred             CC-chhHHHHHHHHhCCCEEEECHHHHHHHHHHHHHcCCCc---------------------------------------
Confidence            33 44567899999999999999998887765433211000                                       


Q ss_pred             HHHHhCCcEeEEEEccCCCCHHHHHHHHHhcCCceeeecCCCCCCCceecccCCCccccCccCCCccCeeEEeeecCCCC
Q 006111          377 VKARLGGRLRLVISGGAPLSTEVEEFLRVTCCAFLVQGYGLTETCGPTTVCFPDEMCMVGTAGPVSVYSELRLEEVPEMG  456 (660)
Q Consensus       377 ~~~~~~~~lr~i~~~G~~l~~~~~~~~~~~~~~~v~~~YG~tE~~~~~~~~~~~~~~~~~~~G~~~~~~~v~ivd~~~~~  456 (660)
                          ...++|.+++||+++++++.+.+++.+|+++++.||+||++. +..+...     .....+.+.+.++|+| ++++
T Consensus       202 ----~~~~lr~ii~gGE~l~~~~r~~ie~~~g~~v~~~YG~TE~~~-~~~c~~~-----~g~h~~~d~~~vEIvD-p~~~  270 (445)
T TIGR03335       202 ----AESSIRRLVVGGESFADESRNYVEELWGCEVYNTYGSTEGTM-CGECQAV-----AGLHVPEDLVHLDVYD-PRHQ  270 (445)
T ss_pred             ----ccCcceEEEEcCCCCCHHHHHHHHHHhCCcEEecCChhhhhh-eEEecCC-----CCccccCCceEEEEEc-CCCC
Confidence                003899999999999999999999999999999999999863 2222110     1122233457889999 6654


Q ss_pred             CCCCCCCCCceEEEccCCcc---cccCCCchhhhhcccCCccccCceEEECC-C----C----cEEEEeccCCeeEcCCC
Q 006111          457 YSPLDDPPCGEVCVRGKTLF---SGYYKNPDLTRESIIDGWFHTGDIGQILP-N----G----VVKIIDRKKNLIKISQG  524 (660)
Q Consensus       457 ~~~~~~~~~Gei~v~g~~~~---~gy~~~~~~~~~~~~~g~~~TGDl~~~~~-~----G----~l~~~GR~~d~i~~~~G  524 (660)
                       .+++.|+.|||++++-...   .+.    ...       -|+|||++.+.. +    |    ++...||.||++++ .|
T Consensus       271 -~~vp~Ge~GELvvT~L~~~~~r~~~----Pli-------RYrtgD~~~~~~~~~C~CGr~~~r~~~~gR~dd~~~~-~g  337 (445)
T TIGR03335       271 -RFLPDGECGRIVLTTLLKPGERCGS----LLI-------NYDTEDTTVVISRDRCPCGRTHMRILNPEREAETIWI-SG  337 (445)
T ss_pred             -CCCcCCCceEEEEEecCCCCccCCc----eEE-------EeecCceEEEecCCCCCCCCCcceeCCCcccCceEEE-CC
Confidence             4456789999999884321   000    000       289999998632 2    2    24456999999999 79


Q ss_pred             eeecchhHHHHHhcCc
Q 006111          525 EYVALEYLENVYCVAP  540 (660)
Q Consensus       525 ~~v~~~~iE~~l~~~p  540 (660)
                      .+|+|.+||++|.+++
T Consensus       338 ~~~~p~~ie~~l~~~~  353 (445)
T TIGR03335       338 VPFNRVDVERAVFQRE  353 (445)
T ss_pred             EEeCHHHHHHHHhccC
Confidence            9999999999999953

This enzyme, characterized in Methanobacterium thermoautotrophicum and found in several other methanogens, modifies coenzyme F420 by ligation of AMP (or GMP) from ATP (or GTP). On F420, it activates an aromatic hydroxyl group, which is unusual chemistry for an adenylyltransferase. This enzyme name has been attached to numbers of uncharacterized genes likely to instead act as phenylacetate CoA ligase, based on proximity to predicted indolepyruvate ferredoxin oxidoreductase (1.2.7.8) genes. The enzyme acts during transient exposure of the organism to oxygen.

>TIGR03089 conserved hypothetical protein TIGR03089

Probab=99.93  E-value=2.5e-24  Score=207.66  Aligned_cols=221  Identities=15%  Similarity=0.043  Sum_probs=163.7

Q ss_pred             HHHHHHhCCCCCceeeeccccCCCCCceEEeHHHHHHHHHHHHHHHHH-cCCCCCCEEEEEeCCchhHHHHHHHHHhCCC
Q 006111           48 FSMSVQKYPGNRMLGWRPFVDGKFGPYVWKTYKEVYEEVLQIVSALRA-SGAEPGCRVGIYGANCPQWVEAMEACNALSL  126 (660)
Q Consensus        48 l~~~a~~~pd~~a~~~~~~~d~~~~~~~~~Ty~ql~~~v~~lA~~L~~-~Gl~~gd~V~l~~~n~~e~~~~~lA~~~~G~  126 (660)
                      |.+.++++|+++|+++.   ++.+++-+++||+||.++++++|+.|++ .|+++||+|+++++|+++++++++||+++|+
T Consensus         2 ~~~~~~~~p~~~al~~~---~~~~~~~~~~Ty~~l~~~~~~~a~~L~~~~Gv~~GdrV~i~~~n~~~~~~~~~a~~~~G~   78 (227)
T TIGR03089         2 LSPLLAADPASPRLTFY---DDATGERVELSAATLANWVAKTANLLQDELDAEPGSRVALDLPAHWQTAVWLLAAWSTGV   78 (227)
T ss_pred             hhhhhhhCCCCcEEEEE---cCCCCeeEEEEHHHHHHHHHHHHHHHHHHhCCCCCCEEEEECCCCHHHHHHHHHHHHcCC
Confidence            56788899999999865   3322123579999999999999999998 6999999999999999999999999999999


Q ss_pred             eEEecCCCCChhHHHHHHhcccceEEEEccchhhhhhccccccccCccEEEEecC--CcHHHHHHHhhCCcceeeHHHHH
Q 006111          127 ICVPLYDTLGPGAVNFILDHAEIDFVFVQDKKVKELLSPDCRSAQRLRVMVCFTS--LTAEQKEMAVQTGIKPYSWDEFL  204 (660)
Q Consensus       127 ~~vpl~~~~~~~~l~~~l~~~~~~~ii~~~~~~~~~~~~~~~~~~~~~~i~~~~~--~~~~~~~~~~~~~~~~~~~~~~~  204 (660)
                      +++|++             .+++++++++++.......      .  ..++.+..  .....   .........+|.+..
T Consensus        79 v~vp~n-------------~s~a~~~v~~~~~~~~~~~------~--~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~  134 (227)
T TIGR03089        79 EVVLAG-------------DPDADVVVTGPDRLAAAAG------S--GEVVALSLDPLGRRV---AGELPPGVIDFAPEV  134 (227)
T ss_pred             EEEeCC-------------CCCCCEEEeCcchhhhccc------C--CceEEEeccccccCC---CCCCCCcccchhhhh
Confidence            999995             6899999999887665321      1  12222211  00000   000011223565555


Q ss_pred             hcCccCCccCCCCCCCceEEEEecCCCCCCCceeeecchhHHHHhhhhhhhcccccCCCCCCcEEEEecChhHHHHHHH-
Q 006111          205 HLGKVNEMEILPPQPFNICTIMYTSGTSGDPKGVVLTHETIATFVSGVDLFLDQFEDKMTVDDVYLSFLPLAHILDRVI-  283 (660)
Q Consensus       205 ~~~~~~~~~~~~~~~~~~~~i~~TSGTTG~pK~v~~th~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~pl~~~~g~~~-  283 (660)
                      ........+.....++|+++++||||+         +|++++...    ..+     ++.++|+++ .+|++|.+|+.. 
T Consensus       135 ~~~~~~~~~~~~~~~~D~a~l~yTsg~---------~~~~~~~~~----~~~-----~l~~~D~~l-~~Pl~H~~gl~~~  195 (227)
T TIGR03089       135 RVHGDQFAPYEPPDATAPALVAGGGEW---------TGAELVAAA----RAA-----GLPPGDRVL-VLAWTDLEDFLAT  195 (227)
T ss_pred             hccCCCCCCCCCCCCCcceeeeccccc---------cHHHHHHHH----hhc-----CCCCCCeEE-ecCCCchHHHHHH
Confidence            432222222214467999999999986         566665554    233     788999999 999999999975 


Q ss_pred             HHHHhhcCcEEEEecC-ChhhHHHHhhhhcCe
Q 006111          284 EEYFFRRGASVGYYHG-DLNALRDDLMELKPT  314 (660)
Q Consensus       284 ~l~~l~~G~~~v~~~~-~~~~~~~~i~~~~~t  314 (660)
                      ++.+++.|+++++.+. ++..+++.|+++|||
T Consensus       196 ~~~~l~~G~t~v~~~rFd~~~~l~~i~~~~vT  227 (227)
T TIGR03089       196 LLAPLAAGGSLVLVTHPDPARLDQIAETERVT  227 (227)
T ss_pred             HHHHhccCceEEEecCCCHHHHHHHHHhhcCC
Confidence            6788999999998876 999999999999987

This protein family is found, so far, only in the Actinobacteria (Streptomyces, Mycobacterium, Corynebacterium, Nocardia, Propionibacterium, etc.) and never more than one to a genome. Members show twilight-level sequence similarity to family of AMP-binding enzymes described by Pfam model pfam00501.

>COG1541 PaaK Coenzyme F390 synthetase [Coenzyme metabolism]

Probab=99.91  E-value=2.5e-22  Score=203.24  Aligned_cols=284  Identities=22%  Similarity=0.204  Sum_probs=209.4

Q ss_pred             CCCCceEEEEecCCCCCCCceeeecchhHHHHhhhhhhhcccccCCCCCCcEEEEecChh-HHHHHHHHHHHhhcCcEEE
Q 006111          217 PQPFNICTIMYTSGTSGDPKGVVLTHETIATFVSGVDLFLDQFEDKMTVDDVYLSFLPLA-HILDRVIEEYFFRRGASVG  295 (660)
Q Consensus       217 ~~~~~~~~i~~TSGTTG~pK~v~~th~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~pl~-~~~g~~~~l~~l~~G~~~v  295 (660)
                      .+.++...|--||||||.|+.+.+|...+..+...+...+...  +...+|++..+.-.. +..|+..-+.+--.|++++
T Consensus        87 ~~~~~i~~ihaSSGTTGkPt~~~~t~~D~~~wa~~~aR~~~~~--g~~~gd~v~~~~~yGl~tgg~~~~~ga~rig~~vi  164 (438)
T COG1541          87 VPKEEIVRIHASSGTTGKPTVFGYTAKDIERWAELLARSLYSA--GVRKGDKVQNAYGYGLFTGGLGLHYGAERIGATVI  164 (438)
T ss_pred             ccccceEEEEccCCCCCCceeeecCHHHHHHHHHHHHHHHHHc--cCCCCCEEEEEeeeccccCCchhHHHHHhhCEEEE
Confidence            3455666678899999999999999999988888887766433  677788877665522 1122233344444677766


Q ss_pred             EecC-ChhhHHHHhhhhcCeEEEechHHHHHHHHHHHHHHHhhchHHHHHHHHHHHHHHHHHhhCCCCCCcchhhhHHHH
Q 006111          296 YYHG-DLNALRDDLMELKPTLLAGVPRVFEKIHEGIKKALEELRPLRRRIFDALYKYKLAWMNMGYKQREASPLADLLAF  374 (660)
Q Consensus       296 ~~~~-~~~~~~~~i~~~~~t~~~~~p~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  374 (660)
                      -... +...-+..++++++|++.++|+.+..|++.+.+.....                                +    
T Consensus       165 p~~~g~~~~~~~l~~df~~tvI~~tps~~l~lae~~~~~G~~~--------------------------------~----  208 (438)
T COG1541         165 PISGGNTERQLELMKDFKPTVIAATPSYLLYLAEEAEEEGIDP--------------------------------D----  208 (438)
T ss_pred             ccCCccHHHHHHHHHhcCCcEEEEChHHHHHHHHHHHHcCCCh--------------------------------h----
Confidence            5544 88999999999999999999999999988766542100                                0    


Q ss_pred             HHHHHHhCCcEeEEEEccCCCCHHHHHHHHHhcCCceeeecCCCCCCCce-ecccCCCccccCccCCCccCeeEEeeecC
Q 006111          375 RKVKARLGGRLRLVISGGAPLSTEVEEFLRVTCCAFLVQGYGLTETCGPT-TVCFPDEMCMVGTAGPVSVYSELRLEEVP  453 (660)
Q Consensus       375 ~~~~~~~~~~lr~i~~~G~~l~~~~~~~~~~~~~~~v~~~YG~tE~~~~~-~~~~~~~~~~~~~~G~~~~~~~v~ivd~~  453 (660)
                             ..+||.+++|+|+++++..+.+.+.||+..++.||+||..+.. ..|....     .....-+...+.++| |
T Consensus       209 -------~~~lk~~i~gaE~~see~R~~ie~~~g~~~~diYGltE~~g~g~~eC~~~~-----glhi~eD~~~~Ei~d-P  275 (438)
T COG1541         209 -------KLSLKKGIFGAEPWSEEMRKVIENRFGCKAFDIYGLTEGFGPGAGECTERN-----GLHIWEDHFIFEIVD-P  275 (438)
T ss_pred             -------hcceeEEEEecccCCHHHHHHHHHHhCCceeeccccccccCCccccccccc-----CCCcchhhceeeeec-C
Confidence                   0389999999999999999999999999999999999998774 2222211     122344577888999 5


Q ss_pred             CCCCCCCCCCCCceEEEccCCcccccCCCchhhhhcccCCccccCceEEECCC----Cc-----EEEEeccCCeeEcCCC
Q 006111          454 EMGYSPLDDPPCGEVCVRGKTLFSGYYKNPDLTRESIIDGWFHTGDIGQILPN----GV-----VKIIDRKKNLIKISQG  524 (660)
Q Consensus       454 ~~~~~~~~~~~~Gei~v~g~~~~~gy~~~~~~~~~~~~~g~~~TGDl~~~~~~----G~-----l~~~GR~~d~i~~~~G  524 (660)
                      +.+ ..+++|+.|||+++.-.  +..          ++==-|+|||+..+.++    |+     -.+.||.+|++++ .|
T Consensus       276 ~t~-e~l~dge~GelV~T~L~--~~~----------~PlIRYrtgDit~i~~~~C~cGr~~~ri~~I~GR~dD~l~~-~G  341 (438)
T COG1541         276 ETG-EQLPDGERGELVITTLT--KEG----------MPLIRYRTGDITVILSDPCGCGRTHRRIERIEGRSDDMLIV-RG  341 (438)
T ss_pred             CcC-ccCCCCCeeEEEEEecc--ccC----------cceEEEEcCCeeEecccCCCCCCccccccccCcccccEEEE-CC
Confidence            555 45667789999998732  100          00012999999999763    32     5688999999999 59


Q ss_pred             eeecchhHHHHHhcCcCcc---eEEEEecCCCCeEEEEEEcChh
Q 006111          525 EYVALEYLENVYCVAPIIE---DIWVYGDSLKSMLVAVVVPCEE  565 (660)
Q Consensus       525 ~~v~~~~iE~~l~~~p~V~---~~~V~~~~~~~~~~a~v~~~~~  565 (660)
                      .+|+|.+||..|.+++.+.   +.++......+.+.+.|+..++
T Consensus       342 ~~vfp~~ie~~l~~~~~~~~~yqi~~~~~~~~d~L~V~vE~~~~  385 (438)
T COG1541         342 VNVFPSQIERVLLQIPEVTPHYQIILTRNGGLDELTVRVELENE  385 (438)
T ss_pred             EEeCHHHHHHHHhcccCCCceEEEEEecCCCCceEEEEEEecCc
Confidence            9999999999999999999   5555553334578888888763

>KOG3628 consensus Predicted AMP-binding protein [General function prediction only]

Probab=99.89  E-value=3e-21  Score=207.15  Aligned_cols=521  Identities=14%  Similarity=0.110  Sum_probs=344.7

Q ss_pred             CCCCcHHHHHHHHHHhCCCCCceeeeccccCCCCCceEEeHHHHHHHHHHHHH-HHHHcCCCCCCEEEEEeCCc--hhHH
Q 006111           39 SDLNTAWDIFSMSVQKYPGNRMLGWRPFVDGKFGPYVWKTYKEVYEEVLQIVS-ALRASGAEPGCRVGIYGANC--PQWV  115 (660)
Q Consensus        39 ~~~~ti~~~l~~~a~~~pd~~a~~~~~~~d~~~~~~~~~Ty~ql~~~v~~lA~-~L~~~Gl~~gd~V~l~~~n~--~e~~  115 (660)
                      ..+..+..+++++-.+++-.+|.+..   |.+++ ...+||..+..++.++|+ .|-+.|+.++|+|.+++..+  ++++
T Consensus        91 ~a~~d~~avl~~~~nhs~~~ta~i~i---d~kgk-~~~~twdkl~~rA~k~a~~~l~ksgl~~~~~vvL~Y~~~e~ie~~  166 (1363)
T KOG3628|consen   91 MALTDIIAVLRYRRNHSATSTAHICI---DKKGK-ATSITWDKLLNRAEKVAHVELNKSGLKPGDRVVLYYRKCEAIEFL  166 (1363)
T ss_pred             hhhcchHHHHHhhccCCCCCceEEEE---cCCCc-eeeeeHHHHHHHHHhhccHHhhccCCCCCcEEEEEEEhhhhhHHh
Confidence            34666888888888999999999998   77777 899999999999999999 45566999999999999887  8999


Q ss_pred             HHHHHHHhCCCeEEecCCCCChhHHHHHHhcccceEEEEccchhhhhhccccc-cccCccEEEEecCCcHHHHHHHhhCC
Q 006111          116 EAMEACNALSLICVPLYDTLGPGAVNFILDHAEIDFVFVQDKKVKELLSPDCR-SAQRLRVMVCFTSLTAEQKEMAVQTG  194 (660)
Q Consensus       116 ~~~lA~~~~G~~~vpl~~~~~~~~l~~~l~~~~~~~ii~~~~~~~~~~~~~~~-~~~~~~~i~~~~~~~~~~~~~~~~~~  194 (660)
                      +..++|..+|.+++|+.+..+.+++..+++....+++++.......+...... ...+.             ..+.    
T Consensus       167 isl~gc~l~g~~~vp~~e~~s~~el~~i~~~~~~~~~l~t~a~~r~~~~~~~~~s~~k~-------------v~~w----  229 (1363)
T KOG3628|consen  167 ISLFGCFLLGIVAVPLSELSSSEELKDIVNPTPERVALTTEAGERAFINDNSPVSLAKA-------------VAWW----  229 (1363)
T ss_pred             hhhccccccceeeccchhhhhhhhhhcccCCCccceEeehhhhHHHhhhccCcccHHHH-------------HHhh----
Confidence            99999999999999999999999999999999999999988766655332210 00000             0000    


Q ss_pred             cceeeHHHHHhcCccCCccCCCCCCCceEEEEecCCCCCCCceeeecchhHHHHhhhhhhhcc---------------cc
Q 006111          195 IKPYSWDEFLHLGKVNEMEILPPQPFNICTIMYTSGTSGDPKGVVLTHETIATFVSGVDLFLD---------------QF  259 (660)
Q Consensus       195 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~TSGTTG~pK~v~~th~~l~~~~~~~~~~~~---------------~~  259 (660)
                          ...++-.....+....+...-. ..+|-||++++|.--+++++|. ++.+...+.....               ..
T Consensus       230 ----~t~~~k~~~~~~k~~~P~~~~~-~~~i~~t~s~l~~~~g~V~~~~-~~~q~r~~~~~~nt~Pa~~~~~~~~~~~~~  303 (1363)
T KOG3628|consen  230 ----KTNDFKGNYTKDKIKKPRMQLP-YGYIEFTRSPLGNLIGVVYKHK-FLPQMRVLTSIPNTNPARFAAAFYGCLHAH  303 (1363)
T ss_pred             ----hcccccceeehhhccCCceeee-eEEEEEeccchhceeeeEeecc-cccchhhhhhccCcChHHHHHhhhcchhhh
Confidence                0000100000111112222223 8899999999999999999998 5555544322211               11


Q ss_pred             cCCCCCCcEEEEecChhHHHHHHH-HHHHhhcCcEEEEecC----ChhhHHHHhhhhcCeEEEechHHHHHHHHHHHHHH
Q 006111          260 EDKMTVDDVYLSFLPLAHILDRVI-EEYFFRRGASVGYYHG----DLNALRDDLMELKPTLLAGVPRVFEKIHEGIKKAL  334 (660)
Q Consensus       260 ~~~~~~~~~~l~~~pl~~~~g~~~-~l~~l~~G~~~v~~~~----~~~~~~~~i~~~~~t~~~~~p~~~~~l~~~~~~~~  334 (660)
                      ..+....+.++..+.+....|+++ .+.++++|.+....+.    .+..+...+.+++.+++......+.+....+...+
T Consensus       304 v~~~~~~~~~l~~~~~s~~lGlilGV~~alfsg~c~i~~p~~~l~~pG~~~~l~~k~R~~~~ltd~~~Lkq~~~ny~~~p  383 (1363)
T KOG3628|consen  304 VFPVPSEDVLLTNLDPSQQLGLILGVLVALFSGYCTIGCPKEVLKPPGLIANLITKYRATWSLTDYAGLKQPVYNYQEDP  383 (1363)
T ss_pred             ccccCcccceeeccCcccccchhhhhhhhhhcCceeecCchhhcCCCcchhhhhccceeEEEeecccccCcccccccCCc
Confidence            123456778888888888888887 7888999999888775    78999999999999999988777666544332211


Q ss_pred             HhhchHHHHHHHHHHHHHHHHHhhCCCCCCcchhhhHHHHHHHHHHhCCcEeEEEEccCCCCHHHHHHHHHhc----CC-
Q 006111          335 EELRPLRRRIFDALYKYKLAWMNMGYKQREASPLADLLAFRKVKARLGGRLRLVISGGAPLSTEVEEFLRVTC----CA-  409 (660)
Q Consensus       335 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lr~i~~~G~~l~~~~~~~~~~~~----~~-  409 (660)
                      +                                  ..+.+.+-+...++++|.|.+.-..++.+......+.+    |. 
T Consensus       384 ~----------------------------------a~~s~~k~~t~d~sslk~C~Vtc~~vd~~~~~ivs~~wlk~lg~~  429 (1363)
T KOG3628|consen  384 K----------------------------------ATLSFKKYKTPDLSSLKGCMVTCTAVDTEFQEIVSDRWLKPLGET  429 (1363)
T ss_pred             c----------------------------------cccchhhccCCCccceeeeEEeeeecchHHHHHHHHhhcccccCc
Confidence            1                                  01112222223347999999999999988665443332    21 


Q ss_pred             -----------------ceeeecCCCCCCCceecccCCC-----------------------------ccccCccCCCcc
Q 006111          410 -----------------FLVQGYGLTETCGPTTVCFPDE-----------------------------MCMVGTAGPVSV  443 (660)
Q Consensus       410 -----------------~v~~~YG~tE~~~~~~~~~~~~-----------------------------~~~~~~~G~~~~  443 (660)
                                       -....=++.|.+...-..+...                             ......+|..++
T Consensus       430 ~~~~~~~p~l~ll~hGgi~is~k~~~~~~~~~~r~p~~~~~~~~~e~ll~~~~L~~~~V~v~~e~~is~~s~kd~~~i~~  509 (1363)
T KOG3628|consen  430 NVKVVDFPILCLLWHGGIPISFKDWMEIGTVSIRRPEQMADTLPGEGLLSKEALKLNEVEVDTEDDISSLSVKDVLCIMP  509 (1363)
T ss_pred             CcceeechhhhhhhcCceEEEeccchhhhcccccCcccccccCccceeeeccccccceEEEcchhhhhhcCccccceecc
Confidence                             1222223345554433322200                             011235565555


Q ss_pred             C-eeEEeeecCCCCCCCCCCCCCceEEEccCCcccccCCCchhhhhccc-------------CCccccCceEEECCCCcE
Q 006111          444 Y-SELRLEEVPEMGYSPLDDPPCGEVCVRGKTLFSGYYKNPDLTRESII-------------DGWFHTGDIGQILPNGVV  509 (660)
Q Consensus       444 ~-~~v~ivd~~~~~~~~~~~~~~Gei~v~g~~~~~gy~~~~~~~~~~~~-------------~g~~~TGDl~~~~~~G~l  509 (660)
                      | ..+.+++  ++....|..+++|||||.++++..+|+.-+..+...|.             ..|.|||-+|++. +|.+
T Consensus       510 g~~t~~vv~--~~t~~LC~~~eVGEIwVsS~~~~~~~~al~~~t~~~F~~~~~~s~~~~~~n~~FmRtGLlGFv~-~gki  586 (1363)
T KOG3628|consen  510 GDATLAVVN--PDTNQLCKTDEVGEIWVSSNSLGKLFYALDKQTENTFKATPVESSGKPPSNVPFMRTGLLGFVH-NGKI  586 (1363)
T ss_pred             cceEEEEeC--CCcccccccCcceeEEEecCCcccceeeccccccceEEeeeccccCCCCccchhhhhcceeeee-CCeE
Confidence            5 3444454  55556777789999999999999999987777766661             1289999999996 6667


Q ss_pred             EEEeccCCeeEcCCCeeecchh----------HHHHHhcCcCcceEEEEecCCCCeEEEEEEcChhhHHHHHHHCCCCCc
Q 006111          510 KIIDRKKNLIKISQGEYVALEY----------LENVYCVAPIIEDIWVYGDSLKSMLVAVVVPCEEDTKKWAYSNGHAGS  579 (660)
Q Consensus       510 ~~~GR~~d~i~~~~G~~v~~~~----------iE~~l~~~p~V~~~~V~~~~~~~~~~a~v~~~~~~~~~~~~~~~~~~~  579 (660)
                      |++|-++|++.--.|...+..+          |+.+++..+.|.++.++-   .++.+.+++-++...         +++
T Consensus       587 ~vl~~k~d~llq~~~~~h~~d~iv~thya~~~iktV~R~v~~VF~~saf~---~E~~~Vv~~esP~a~---------e~~  654 (1363)
T KOG3628|consen  587 YVLGLKEDGLLQVSGWRHNADDIVATHYAVELIKTVMRGVIAVFDVSAFE---DEHIVVVVLESPDAT---------EEN  654 (1363)
T ss_pred             EEEEechhhhhhhhhhhhhhhhhHhhHHHHHHHHHHHhccceEEEEeeee---cceEEEEEEeCcchh---------hhh
Confidence            7777666555432455554333          566677888999999987   445555555555431         111


Q ss_pred             HHHHhccHHHHHHHHHHHHHHHHhCCCCCceeeeEEEEecCCCCCCCCccccccccchHHHHHHHHH-HHHHHH
Q 006111          580 FLELCSLVQLQNYILSELKNAAERNKLRGFEHIKGVILDPRPFDMERDLVTATLKKKRNKLLIYYQV-EIDQLY  652 (660)
Q Consensus       580 ~~~~~~~~~~~~~~~~~l~~~~~~~~l~~~~~p~~i~~~~~~~~~~~~P~t~~GKv~R~~l~~~~~~-~i~~~y  652 (660)
                      -      -+....+.+.+...   +++..|    .+.+++    ..++|||+.|-+.-...+++|.+ .+...|
T Consensus       655 ~------~q~~~~v~q~l~~i---Hqv~vy----CilivP----~~tLPrt~~~Gi~~~~~k~~F~~G~L~~~~  711 (1363)
T KOG3628|consen  655 S------FQWMSRVFQALDSI---HQVGVY----CILIVP----ANTLPRTPLGGIHNNECKQAFLEGSLPPSY  711 (1363)
T ss_pred             h------hhHHHHHHHHHHHH---hcccce----EEEEec----cccCCCccccccccHHHHHHHHcCCCCcce
Confidence            1      11222333333333   344444    244443    37899999998999999999965 444433

>PRK09188 serine/threonine protein kinase; Provisional

Probab=99.76  E-value=1.6e-18  Score=176.76  Aligned_cols=117  Identities=15%  Similarity=0.032  Sum_probs=97.0

Q ss_pred             cccCCccccCceEEE-CCCCcEEEEeccCCeeEcCCC---eeecchhHHHHHhcCcCcceEEEEecCCC---CeEEEEEE
Q 006111          489 SIIDGWFHTGDIGQI-LPNGVVKIIDRKKNLIKISQG---EYVALEYLENVYCVAPIIEDIWVYGDSLK---SMLVAVVV  561 (660)
Q Consensus       489 ~~~~g~~~TGDl~~~-~~~G~l~~~GR~~d~i~~~~G---~~v~~~~iE~~l~~~p~V~~~~V~~~~~~---~~~~a~v~  561 (660)
                      .|.+|||+|||+|++ |++|+|++.||.+      +|   ++|+|. ||++|.+||+|.+|+|+|.+++   +.++|+|+
T Consensus       205 ~~~dgW~~TGDlg~~~d~dG~l~~~gR~~------~G~~i~nV~p~-IE~~L~~hp~V~eaaVvgvpd~~~ge~v~A~Vv  277 (365)
T PRK09188        205 LPSRIWLATGKKVYNFITRGLFSWSDGEG------TGDRIDNEAPA-IQAALKSDPAVSDVAIALFSLPAKGVGLYAFVE  277 (365)
T ss_pred             cccCcEEeCCCEEEEEcCCCeEEEEecCc------CCcCceeeCHH-HHHHHHhCCCccEEEEEEEEcCCCCeEEEEEEE
Confidence            347999999999998 7999999999997      57   799999 9999999999999999998765   48999998


Q ss_pred             cChhhHHHHHHHCCCCCcHHHHhccHHHHHHHHHHHHHHHHhCCCCCceeeeEEEEecCCCCCCCCccccccccchHHHH
Q 006111          562 PCEEDTKKWAYSNGHAGSFLELCSLVQLQNYILSELKNAAERNKLRGFEHIKGVILDPRPFDMERDLVTATLKKKRNKLL  641 (660)
Q Consensus       562 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~l~~~~~p~~i~~~~~~~~~~~~P~t~~GKv~R~~l~  641 (660)
                      +....                  +        .++|+++++ .+||. ++|+.|.++++      +|+|++||++|++|+
T Consensus       278 ~~~~~------------------~--------~~el~~~l~-~~L~~-kvP~~v~~v~~------lP~t~~GKi~R~~Lr  323 (365)
T PRK09188        278 AELPA------------------D--------EKSLRARLA-GAKPP-KPPEHIQPVAA------LPRDADGTVRDDILR  323 (365)
T ss_pred             ECCCC------------------C--------HHHHHHHHH-hhchh-cCCcEEEEECC------CCCCCCCCccHHHHH
Confidence            76321                  1        124445554 77999 99999999744      589999999999999


Q ss_pred             HHHHH
Q 006111          642 IYYQV  646 (660)
Q Consensus       642 ~~~~~  646 (660)
                      +....
T Consensus       324 ~~~~~  328 (365)
T PRK09188        324 LIAMN  328 (365)
T ss_pred             HHhhc
Confidence            88643

>TIGR02304 aden_form_hyp probable adenylate-forming enzyme

Probab=99.71  E-value=7.2e-15  Score=153.61  Aligned_cols=260  Identities=16%  Similarity=0.163  Sum_probs=165.0

Q ss_pred             eEEEEecCCCCCCCceeeecchhHHHHhhhhhhhcccccCCCCCCcEEEEecC-hhHHHHHHHHHHHhhcCcEEEEec--
Q 006111          222 ICTIMYTSGTSGDPKGVVLTHETIATFVSGVDLFLDQFEDKMTVDDVYLSFLP-LAHILDRVIEEYFFRRGASVGYYH--  298 (660)
Q Consensus       222 ~~~i~~TSGTTG~pK~v~~th~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~p-l~~~~g~~~~l~~l~~G~~~v~~~--  298 (660)
                      -..+..||||||.|-.+..+..............+.  ..++..++++...+. -.+.+....     .....+..++  
T Consensus       101 ~~~v~~TSGSSG~p~~f~~~~~~~~~~~a~~~~~~~--~~g~~~g~r~a~~~~~~~~ly~~~~-----~~~~~~~~~~l~  173 (430)
T TIGR02304       101 NISVGLSSGTSGRRGLFVVSPEEQQMWAGGILAKVL--PDGLFAKHRIAFFLRADNNLYQSVN-----NRWISLDFFDLL  173 (430)
T ss_pred             cEEEEECCCCCCCceEEEECHHHHHHHHHHHHhhhC--ccccccCCcEEEEEccChhHHHHHH-----hccceeeecCCC
Confidence            345678999999999999998877555443322221  113445555554421 112221110     0111122232  


Q ss_pred             CChhhHHHHhhhhcCeEEEechHHHHHHHHHHHHHHHhhchHHHHHHHHHHHHHHHHHhhCCCCCCcchhhhHHHHHHHH
Q 006111          299 GDLNALRDDLMELKPTLLAGVPRVFEKIHEGIKKALEELRPLRRRIFDALYKYKLAWMNMGYKQREASPLADLLAFRKVK  378 (660)
Q Consensus       299 ~~~~~~~~~i~~~~~t~~~~~p~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  378 (660)
                      .+....++.|++++|+++.++|+.+..|++...+...  .                                        
T Consensus       174 ~~~~~~l~~L~~~~P~~L~g~pS~l~~LA~~~~~~~l--~----------------------------------------  211 (430)
T TIGR02304       174 APFQAHIKRLNQRKPSIIVAPPSVLRALALEVMEGEL--T----------------------------------------  211 (430)
T ss_pred             cCHHHHHHHHHHhCCCEEEEcHHHHHHHHHHHHhcCC--C----------------------------------------
Confidence            2788999999999999999999999999876543210  0                                        


Q ss_pred             HHhCCcEeEEEEccCCCCHHHHHHHHHhcCCceeeecCCCCCCCceecccCCCccccCccCCCccCeeEE--eeecCCCC
Q 006111          379 ARLGGRLRLVISGGAPLSTEVEEFLRVTCCAFLVQGYGLTETCGPTTVCFPDEMCMVGTAGPVSVYSELR--LEEVPEMG  456 (660)
Q Consensus       379 ~~~~~~lr~i~~~G~~l~~~~~~~~~~~~~~~v~~~YG~tE~~~~~~~~~~~~~~~~~~~G~~~~~~~v~--ivd~~~~~  456 (660)
                          .+++.++++||.++++..+.+++.||+++++.||+|| |.+++.+..+.      ...-...+-++  ++| +++ 
T Consensus       212 ----~~~k~ii~~~E~l~~~~r~~Ie~~fg~~V~~~YG~tE-g~la~eC~~g~------lHl~ed~~~vE~~ivD-~~~-  278 (430)
T TIGR02304       212 ----IKPKKVISVAEVLEPQDRELIRNVFKNTVHQIYQATE-GFLASTCRCGT------LHLNEDLVHIEKQYLD-EHK-  278 (430)
T ss_pred             ----CCceEEEEccCCCCHHHHHHHHHHhCCCeeEccCCch-hheEEecCCCC------EEEccccEEEEeeEEC-CCC-
Confidence                2789999999999999999999999999999999999 55554443321      11111222333  666 433 


Q ss_pred             CCCCCCCCCceEEEccCCcccccCCCchhhhhcccCCccccCceEEECCC----Cc----E-EEEeccCCeeEc--CCCe
Q 006111          457 YSPLDDPPCGEVCVRGKTLFSGYYKNPDLTRESIIDGWFHTGDIGQILPN----GV----V-KIIDRKKNLIKI--SQGE  525 (660)
Q Consensus       457 ~~~~~~~~~Gei~v~g~~~~~gy~~~~~~~~~~~~~g~~~TGDl~~~~~~----G~----l-~~~GR~~d~i~~--~~G~  525 (660)
                              .++.+|++      +.+..-.-      =-|+|||++.+.++    |.    + .+.||.+|++++  .+|.
T Consensus       279 --------~~~~ViT~------L~n~~~Pl------IRYrtGD~~~~~~~~C~CGr~~~~i~~I~GR~dD~l~~~~~~G~  338 (430)
T TIGR02304       279 --------RFVPIITD------FTRTTQPI------VRYRLNDILVESEQPCSCGSATMAIERIEGRQDDIFQLITRSGD  338 (430)
T ss_pred             --------ceEEEEec------CCCccceE------EeeeCCCEEEeCCCCCCCCCcccccCCccCccCCEEEEecCCCC
Confidence                    13445554      11111000      02999999888543    32    3 378999999984  3565


Q ss_pred             ee--cchhHHHHH-hcCcCcceEEEEecCCCCeEEEEEEcCh
Q 006111          526 YV--ALEYLENVY-CVAPIIEDIWVYGDSLKSMLVAVVVPCE  564 (660)
Q Consensus       526 ~v--~~~~iE~~l-~~~p~V~~~~V~~~~~~~~~~a~v~~~~  564 (660)
                      .+  +|..++..| ...++|.+.-++... .+.+...++...
T Consensus       339 ~v~v~p~~~~~~i~~~~~~i~~yQi~Q~~-~~~l~v~~~~~~  379 (430)
T TIGR02304       339 EQTVFPDFIRRVILFTLPLIVEYRVLQTG-SAQLELIADCEL  379 (430)
T ss_pred             eEEeCHHHHHHHHHhcCCCCceEEEEEcc-CCeEEEEEEeCh
Confidence            54  889999885 568899999888754 445555555543

Members of this family form a distinct clade within a larger family of proteins that also includes coenzyme F390 synthetase, an enzyme known in Methanobacterium thermoautotrophicum and a few other methanogenic archaea. That enzyme adenylates coenzyme F420 to F390, a reversible process, during oxygen stress. Other informative homologies include domains of the non-ribosomal peptide synthetases involved in activation by adenylation. The family defined by this model is likely to be of an adenylate-forming enzyme related to but distinct from coenzyme F390 synthetase.

>PF04443 LuxE: Acyl-protein synthetase, LuxE; InterPro: IPR007534 LuxE is an acyl-protein synthetase found in bioluminescent bacteria

Probab=98.98  E-value=7e-08  Score=98.99  Aligned_cols=241  Identities=18%  Similarity=0.209  Sum_probs=143.4

Q ss_pred             CCCceEEEEecCCCCCCCceeeecchhHHHHhhhhhhhcccccCCCCCCcEEEEecChhH---HHHH--HHHHHHhhcCc
Q 006111          218 QPFNICTIMYTSGTSGDPKGVVLTHETIATFVSGVDLFLDQFEDKMTVDDVYLSFLPLAH---ILDR--VIEEYFFRRGA  292 (660)
Q Consensus       218 ~~~~~~~i~~TSGTTG~pK~v~~th~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~pl~~---~~g~--~~~l~~l~~G~  292 (660)
                      +++++..++-||||||.|--+.+.+..+..+...+...+..+...-...-.++...|-..   .++.  ...+..+..+.
T Consensus        87 ~~e~~~~~~tSSGTtG~~S~i~~D~~t~~~~~~~~~~~~~~~~~~~~~~~~il~l~p~~~~~~~~~~~~~~~~~~~~~~~  166 (365)
T PF04443_consen   87 PEEEVEKVFTSSGTTGQPSRIFRDRETAERQQKSLNKIFQHFLGPSRLPMLILDLSPSPENRNSFSARYAGILGELFFGS  166 (365)
T ss_pred             ChhhheeEEECCCCCCCCcEEEECHHHHHHHHHHHHHHHHhhcccccCCeEEEEecCCcccccchHHHHHHHHhhcccCc
Confidence            345667788899999998778887777777666555554322211122233344444321   1111  11223334455


Q ss_pred             EEEEecC---ChhhHHHHhh----hhcCeEEEechHHHHHHHHHHHHHHHhhchHHHHHHHHHHHHHHHHHhhCCCCCCc
Q 006111          293 SVGYYHG---DLNALRDDLM----ELKPTLLAGVPRVFEKIHEGIKKALEELRPLRRRIFDALYKYKLAWMNMGYKQREA  365 (660)
Q Consensus       293 ~~v~~~~---~~~~~~~~i~----~~~~t~~~~~p~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  365 (660)
                      . .+...   +...++..+.    +.++..+++.|.++-.+...+++......                           
T Consensus       167 ~-~~l~~~~ld~~~~~~~L~~~~~~~~pv~l~Gftf~~~~~~~~l~~~~~~~~---------------------------  218 (365)
T PF04443_consen  167 R-FALDNDELDLEGLIEALFRAEHSGEPVLLFGFTFFIWFLLDELEERGIRFR---------------------------  218 (365)
T ss_pred             e-eeecCCccCHHHHHHHHHHHHhCCCCEEEECchHHHHHHHHHHHhcCCccc---------------------------
Confidence            5 33332   5565555554    56789999999877766654443321111                           


Q ss_pred             chhhhHHHHHHHHHHhCCcEeEEEEcc------CCCCH-HHHHHHHHhcCC----ceeeecCCCCCCCceecccCCCccc
Q 006111          366 SPLADLLAFRKVKARLGGRLRLVISGG------APLST-EVEEFLRVTCCA----FLVQGYGLTETCGPTTVCFPDEMCM  434 (660)
Q Consensus       366 ~~~~~~~~~~~~~~~~~~~lr~i~~~G------~~l~~-~~~~~~~~~~~~----~v~~~YG~tE~~~~~~~~~~~~~~~  434 (660)
                                     +.+..+.+-.||      +.+++ ++...+.+.||+    .+++.||+||.....+.+.....  
T Consensus       219 ---------------L~~~s~vi~~GGwK~~~~e~v~r~ef~~~l~~~~Gv~~~~~i~~~ygmtEl~s~~~~~~~~~~--  281 (365)
T PF04443_consen  219 ---------------LPKGSIVIHGGGWKGRRKEAVSREEFYARLQEVFGVIPIENIYDMYGMTELNSQAYECGHGHF--  281 (365)
T ss_pred             ---------------CCCCCEEEeCCCCCccccCccCHHHHHHHHHHHHCCCCHHHeeeeeeccccchhheeCCCCcc--
Confidence                           001334555554      46765 566778888887    69999999998876665533221  


Q ss_pred             cCccCCCccCeeEEeeecCCCCCCCCCCCCCceEEEccCCcccccCCCchhhhhcccCCccccCceEEECCC--------
Q 006111          435 VGTAGPVSVYSELRLEEVPEMGYSPLDDPPCGEVCVRGKTLFSGYYKNPDLTRESIIDGWFHTGDIGQILPN--------  506 (660)
Q Consensus       435 ~~~~G~~~~~~~v~ivd~~~~~~~~~~~~~~Gei~v~g~~~~~gy~~~~~~~~~~~~~g~~~TGDl~~~~~~--------  506 (660)
                            ++|.. +.+.| +++ ..+++.|+.|-|.+-++... .|            .+..-|.|+|.+..+        
T Consensus       282 ------~~p~w-V~iRD-p~t-l~~~~~Ge~Gli~vidl~~~-s~------------p~~IlTeDlGvl~~~~~c~cr~g  339 (365)
T PF04443_consen  282 ------HVPPW-VIIRD-PET-LEPLPPGETGLIQVIDLANT-SY------------PGFILTEDLGVLHGDDDCGCRKG  339 (365)
T ss_pred             ------cCCCe-EEEEC-CCC-CcCCCCCCeeEEEEEccccc-CC------------CcEEEEcceeeecCCCCCCCccC
Confidence                  22322 66777 543 46777788999988776433 22            234679999988644        


Q ss_pred             CcEEEEeccCCeeEcCCCeee
Q 006111          507 GVVKIIDRKKNLIKISQGEYV  527 (660)
Q Consensus       507 G~l~~~GR~~d~i~~~~G~~v  527 (660)
                      .++.++||.+..=. + |...
T Consensus       340 ~~f~vlGR~~~ae~-R-GCs~  358 (365)
T PF04443_consen  340 KYFEVLGRADGAEI-R-GCSL  358 (365)
T ss_pred             CEEEEEeCCCCCcc-C-CcHH
Confidence            26999999886553 3 5544

LuxE catalyses the formation of an acyl-protein thiolester from a fatty acid and a protein. This is the second step in the bioluminescent fatty acid reduction system, which converts tetradecanoic acid to the aldehyde substrate of the luciferase-catalysed bioluminescence reaction []. A conserved cysteine found at position 364 in Photobacterium phosphoreum LuxE (Q52100 from SWISSPROT) is thought to be acylated during the transfer of the acyl group from the synthetase subunit to the reductase. The C-terminal of the synthetase is though to act as a flexible arm to transfer acyl groups between the sites of activation and reduction []. A LuxE domain is also found in the Vibrio cholerae RBFN protein (Q06961 from SWISSPROT), which is involved in the biosynthesis of the O-antigen component 3-deoxy-L-glycero-tetronic acid. This entry represents the LuxE domain, which is found in archaeal and bacterial proteins.; GO: 0047474 long-chain fatty acid luciferin component ligase activity, 0008218 bioluminescence

>PF13193 AMP-binding_C: AMP-binding enzyme C-terminal domain; PDB: 3L8C_B 2VSQ_A 3R44_A 3RG2_B 3A9U_A 3A9V_A 3NI2_A 1V26_B 1ULT_B 1V25_B

Probab=98.82  E-value=4.8e-09  Score=81.44  Aligned_cols=68  Identities=22%  Similarity=0.179  Sum_probs=50.0

Q ss_pred             hHHHHHhcCcCcceEEEEecCCC---CeEEEEEEcChhhHHHHHHHCCCCCcHHHHhccHHHHHHHHHHHHHHHHhCCCC
Q 006111          531 YLENVYCVAPIIEDIWVYGDSLK---SMLVAVVVPCEEDTKKWAYSNGHAGSFLELCSLVQLQNYILSELKNAAERNKLR  607 (660)
Q Consensus       531 ~iE~~l~~~p~V~~~~V~~~~~~---~~~~a~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~l~  607 (660)
                      |||++|.+||+|.+|+|++.+++   +.++|+|++ .                             .++|+++++ .+||
T Consensus         1 EIE~~l~~~~~V~~~~V~~~~d~~~g~~l~a~vv~-~-----------------------------~~~i~~~~~-~~l~   49 (73)
T PF13193_consen    1 EIESVLRQHPGVAEAAVVGVPDEDWGERLVAFVVL-D-----------------------------EEEIRDHLR-DKLP   49 (73)
T ss_dssp             HHHHHHHTSTTEEEEEEEEEEETTTEEEEEEEEEE-H-----------------------------HHHHHHHHH-HHS-
T ss_pred             CHHHHHhcCCCccEEEEEEEEcccccccceeEEEe-e-----------------------------ecccccchh-hhCC
Confidence            69999999999999999997755   489999998 2                             134444444 5699


Q ss_pred             CceeeeEEEEe--cCCCCCCCCccccccc
Q 006111          608 GFEHIKGVILD--PRPFDMERDLVTATLK  634 (660)
Q Consensus       608 ~~~~p~~i~~~--~~~~~~~~~P~t~~GK  634 (660)
                      .|++|+.+.++  +.     .+|+|++||
T Consensus        50 ~~~~P~~~~~v~~~~-----~lP~t~~GK   73 (73)
T PF13193_consen   50 PYMVPRRIRFVRLDE-----ELPRTPSGK   73 (73)
T ss_dssp             GGGS-SEEEEEEESS-----SEEBETTSS
T ss_pred             CcceeeEEEEccccC-----cCCCCCCCC
Confidence            99999544444  33     268999998

...

>PF03321 GH3: GH3 auxin-responsive promoter; InterPro: IPR004993 Transcription of the gene family, GH3, has been shown to be specifically induced by the plant hormone auxin

Probab=98.40  E-value=2.5e-06  Score=92.83  Aligned_cols=160  Identities=19%  Similarity=0.162  Sum_probs=92.9

Q ss_pred             CcEeEEEEccCCCCHHHHHHHHHhcC-Cc-eeeecCCCCCCCceecccCCCccccCccCCCccCe-eEEeeecCCC----
Q 006111          383 GRLRLVISGGAPLSTEVEEFLRVTCC-AF-LVQGYGLTETCGPTTVCFPDEMCMVGTAGPVSVYS-ELRLEEVPEM----  455 (660)
Q Consensus       383 ~~lr~i~~~G~~l~~~~~~~~~~~~~-~~-v~~~YG~tE~~~~~~~~~~~~~~~~~~~G~~~~~~-~v~ivd~~~~----  455 (660)
                      ++|+.+.+.+..-.......+++.+| .+ +..+|++||+-..+-..+. .     ..+...++. =...++.++.    
T Consensus       267 P~L~~v~~~~~g~~~~y~~~l~~~~g~~~~~~~~y~ASEg~i~i~~~~~-~-----~~~~l~~~~~ffEFip~~~~~~~~  340 (528)
T PF03321_consen  267 PNLKLVSCWGGGSMAPYAPKLREYFGGVPIQSKGYGASEGFIGIPLDPE-D-----PGYVLAPDSGFFEFIPVDEDEQNP  340 (528)
T ss_dssp             TT--EEEEE-SGGGGGGHHHHHHHHTTS-EEE-EEEETTEEEEEES-CC-C-------EEE-TTSSEEEEEE-STT----
T ss_pred             CCCcEEEEEcCCChHHHHHHHHHHcCCCceeeccccccceEEEEecCCC-C-----CceEeecCCeEEEEEeccCCcccc
Confidence            68998888777777778888888885 33 4568999996433322211 1     111122211 2223332221    


Q ss_pred             ----CCC---CCCCCCCceEEEccCCcccccCCCchhhhhcccCCccccCceEEECC--CC--cEEEEeccCCeeEcCCC
Q 006111          456 ----GYS---PLDDPPCGEVCVRGKTLFSGYYKNPDLTRESIIDGWFHTGDIGQILP--NG--VVKIIDRKKNLIKISQG  524 (660)
Q Consensus       456 ----~~~---~~~~~~~Gei~v~g~~~~~gy~~~~~~~~~~~~~g~~~TGDl~~~~~--~G--~l~~~GR~~d~i~~~~G  524 (660)
                          ...   .+..|+.-||.|+..   .|.|.             |+.||+.++..  ++  .+.|+||.+.++.+ .|
T Consensus       341 ~~~~~~l~~~ele~G~~YelviTt~---~GLyR-------------Y~iGDvVrv~gf~~~~P~i~F~~R~~~~l~l-~g  403 (528)
T PF03321_consen  341 SEQPKTLLLHELEVGEEYELVITTN---SGLYR-------------YRIGDVVRVTGFYNQTPRIEFVGRRGQVLSL-FG  403 (528)
T ss_dssp             ---SSSEEGGG--TT-EEEEEEEST---TS-SS-------------EEECEEEEEEEEETTEEEEEEEEETTEEE-S-SS
T ss_pred             cCCCceecHHHhcCCCeEEEEEecc---cceee-------------eecCCEEEEeeccCCCcEEEEeccCCceeec-ce
Confidence                111   122345667888763   33333             89999999852  34  79999999999998 79


Q ss_pred             eeecchhHHHHHhcC-----cCcceEEEEec---CCCCeEEEEEEcChh
Q 006111          525 EYVALEYLENVYCVA-----PIIEDIWVYGD---SLKSMLVAVVVPCEE  565 (660)
Q Consensus       525 ~~v~~~~iE~~l~~~-----p~V~~~~V~~~---~~~~~~~a~v~~~~~  565 (660)
                      ++++-.+|+++|.+.     -.+.+..+...   ..+...+.++++...
T Consensus       404 Ekl~e~~v~~av~~~~~~~~~~~~~f~~~~~~~~~~~~~Y~~~~e~~~~  452 (528)
T PF03321_consen  404 EKLSEEQVQEAVARALQETGLELRDFTVAPDPSSGNPPHYVLFWELEGE  452 (528)
T ss_dssp             --EEHHHHHHHHHHHHHCTT-EEEEEEEEEE--SSSSBEEEEEEEECS-
T ss_pred             eecCHHHHHHHHHHHHHhcCCceeeEEEEeecccCCCCceEEEEEeCCC
Confidence            999999999999654     35667777665   245677888888765

The auxin-responsive GH3 gene promoter is composed of multiple auxin response elements (AuxREs), and each AuxRE contributes incrementally to the strong auxin inducibility to the promoter.; PDB: 4EPL_A 4EQ4_B 4EWV_B 4EQL_B 4EPM_A.

>PLN02249 indole-3-acetic acid-amido synthetase

Probab=97.83  E-value=0.0018  Score=70.86  Aligned_cols=133  Identities=14%  Similarity=0.120  Sum_probs=76.9

Q ss_pred             Cc---EeEEEEccCCCCHHHHHHHHHhcC-Cc-eeeecCCCCCCCceecccCCCccccCccCCC-cc-CeeEEeeecCCC
Q 006111          383 GR---LRLVISGGAPLSTEVEEFLRVTCC-AF-LVQGYGLTETCGPTTVCFPDEMCMVGTAGPV-SV-YSELRLEEVPEM  455 (660)
Q Consensus       383 ~~---lr~i~~~G~~l~~~~~~~~~~~~~-~~-v~~~YG~tE~~~~~~~~~~~~~~~~~~~G~~-~~-~~~v~ivd~~~~  455 (660)
                      ++   +.+++.||..   .....++..+| .+ +..+|++||+-..+-..+....   ...+.. ++ +.=.+.++.++.
T Consensus       302 Pnl~~i~~~~~G~~~---~Y~~~l~~~~g~~~~~~~~Y~ASEg~~gi~~~~~~~p---~~~~~~l~~~~~ffEFiP~~~~  375 (597)
T PLN02249        302 PNTKYLDVIVTGAMA---QYIPMLEYYSGGLPMASTIYASSESYFGINLNPMCKP---SEVSYTIMPNMAYFEFLPHNHD  375 (597)
T ss_pred             CCCCeEEEEecCChH---HHHHHHHHHcCCCccccccccccceEEEeecCCCCCC---CCcceEecCCcEEEEeeecccC
Confidence            56   5666666644   66677776663 43 5668999996533322211000   111111 11 222223321111


Q ss_pred             -C-------CC---CCCCCCCceEEEccCCcccccCCCchhhhhcccCCccccCceEEECC----CCcEEEEeccCCeeE
Q 006111          456 -G-------YS---PLDDPPCGEVCVRGKTLFSGYYKNPDLTRESIIDGWFHTGDIGQILP----NGVVKIIDRKKNLIK  520 (660)
Q Consensus       456 -~-------~~---~~~~~~~Gei~v~g~~~~~gy~~~~~~~~~~~~~g~~~TGDl~~~~~----~G~l~~~GR~~d~i~  520 (660)
                       .       .+   .+..|+.-||+|+.   ..|-|.             |+.||..++..    -=.|.|+||.+.++.
T Consensus       376 ~~~~~~~~~~v~l~eVe~G~~Y~lVvTT---~~GLyR-------------Y~iGDvVrvtgf~~~~P~i~F~gR~~~~ls  439 (597)
T PLN02249        376 GDGALDETSLVELADVEVGKEYELVITT---YAGLYR-------------YRVGDILRVTGFHNSAPQFKFIRRKNVLLS  439 (597)
T ss_pred             CcccCCCCcEecHHHcCCCCeEEEEEEc---ccceeE-------------eecCCEEEEeeccCCCcEEEEEccCCccee
Confidence             1       11   11234456777765   223332             89999999853    236999999999999


Q ss_pred             cCCCeeecchhHHHHHhc
Q 006111          521 ISQGEYVALEYLENVYCV  538 (660)
Q Consensus       521 ~~~G~~v~~~~iE~~l~~  538 (660)
                      + .|+++.-.+++.+|.+
T Consensus       440 ~-~GEKl~e~~v~~Av~~  456 (597)
T PLN02249        440 I-ESDKTDEADLQKAVEN  456 (597)
T ss_pred             c-ccccCCHHHHHHHHHH
Confidence            8 7999999999998865

>PLN02247 indole-3-acetic acid-amido synthetase

Probab=97.76  E-value=0.0024  Score=69.44  Aligned_cols=164  Identities=15%  Similarity=0.081  Sum_probs=94.6

Q ss_pred             hCCcEeEEEEccCCCCHHHHHHHHHhc-CCceee-ecCCCCCCCceecccCCCccccCccCCCccCee-EEeeecCCCCC
Q 006111          381 LGGRLRLVISGGAPLSTEVEEFLRVTC-CAFLVQ-GYGLTETCGPTTVCFPDEMCMVGTAGPVSVYSE-LRLEEVPEMGY  457 (660)
Q Consensus       381 ~~~~lr~i~~~G~~l~~~~~~~~~~~~-~~~v~~-~YG~tE~~~~~~~~~~~~~~~~~~~G~~~~~~~-v~ivd~~~~~~  457 (660)
                      +=+++++|.+.-..-.......++..+ |.+++. +||+||+-+.+=..+.....  ......+|++. .+.+++++++.
T Consensus       291 LWP~lk~I~~~~tGsm~~Y~~~L~~y~gglpl~s~~Y~sSE~~~ginl~p~~~p~--~~sy~L~p~~~yFEFip~~~~~~  368 (606)
T PLN02247        291 LWPRTKYIEVIVTGSMAQYIPTLEFYSGGLPLVSTMYASSECYFGINLKPLSDPS--DVSYTLLPNMAYFEFLPVDKNNG  368 (606)
T ss_pred             hCCCCcEEEEECCCCHHHHHHHHHHHcCCCceecccccccceEEEeccCcCCCcc--CCceeecCCcEEEEEeecCCCcc
Confidence            337899988876666777777887666 566565 89999965433222211110  11112222221 12222111110


Q ss_pred             ------------------------C---CCCCCCCceEEEccCCcccccCCCchhhhhcccCCccccCceEEEC----CC
Q 006111          458 ------------------------S---PLDDPPCGEVCVRGKTLFSGYYKNPDLTRESIIDGWFHTGDIGQIL----PN  506 (660)
Q Consensus       458 ------------------------~---~~~~~~~Gei~v~g~~~~~gy~~~~~~~~~~~~~g~~~TGDl~~~~----~~  506 (660)
                                              +   .+..|+.-||+|+.   +.|.+.             ||.||+.++.    ..
T Consensus       369 ~~~~~~~~~~~~~~~~~~~~~~~~v~l~evk~G~~YelVvTt---~~GLYR-------------YrlGDvv~V~GF~n~~  432 (606)
T PLN02247        369 EVIHFVQCNGTDDDDDALKEDLEIVDLVDVKVGHYYELVVTT---FTGLYR-------------YRVGDILMVTGFYNNA  432 (606)
T ss_pred             cccccccccccccccccccccCceecHHHccCCCeEEEEEEe---cCceEE-------------EecCCEEEEeeecCCC
Confidence                                    0   12234556777765   222222             8999998874    33


Q ss_pred             CcEEEEeccCCeeEcCCCeeecchhHHHHHhcCcCcc---eEEEE-----ec--CCCCeEEEEEEcC
Q 006111          507 GVVKIIDRKKNLIKISQGEYVALEYLENVYCVAPIIE---DIWVY-----GD--SLKSMLVAVVVPC  563 (660)
Q Consensus       507 G~l~~~GR~~d~i~~~~G~~v~~~~iE~~l~~~p~V~---~~~V~-----~~--~~~~~~~a~v~~~  563 (660)
                      -.|.|++|.+.+..+ .|++.+-.++-.++.+.....   .+.++     ..  ..+...+.+++++
T Consensus       433 P~~~Fv~R~~~vlsi-~gEK~tE~~l~~Av~~a~~~l~~~~~~l~d~ts~~d~~~~PghYvlf~El~  498 (606)
T PLN02247        433 PQFRFVQRRNVVLSI-DTDKTNEEDLLKAVTQAKLLLEPLGFLLTEYTSYADTSSIPGHYVLFWELK  498 (606)
T ss_pred             ceEEEEecCCceeec-ccccCCHHHHHHHHHHHHHhhcccCeeeeeeecccccCCCCCceEEEEEee
Confidence            479999999999998 799999999888885432111   22221     11  3345788888775

>PLN02620 indole-3-acetic acid-amido synthetase

Probab=97.60  E-value=0.009  Score=64.92  Aligned_cols=163  Identities=17%  Similarity=0.100  Sum_probs=95.3

Q ss_pred             HhCCcEeEEEEccCCCCHHHHHHHHHhc-CCceee-ecCCCCCCCceecccCCCccccCccC-CCccCe---eEEeeecC
Q 006111          380 RLGGRLRLVISGGAPLSTEVEEFLRVTC-CAFLVQ-GYGLTETCGPTTVCFPDEMCMVGTAG-PVSVYS---ELRLEEVP  453 (660)
Q Consensus       380 ~~~~~lr~i~~~G~~l~~~~~~~~~~~~-~~~v~~-~YG~tE~~~~~~~~~~~~~~~~~~~G-~~~~~~---~v~ivd~~  453 (660)
                      .+=+++++|.+....-.......++..+ |.+++. +|++||+-+.+=..+....   ..+. ..+|+.   |..-++ +
T Consensus       301 rLWP~lk~I~~~~tGsm~~Y~p~L~~y~gglpl~~~~Y~ASE~~~ginl~P~~~p---~~~sy~L~p~~~yFEFip~~-~  376 (612)
T PLN02620        301 RLWPNTKYVDVIVTGTMSQYIPTLDYYSNGLPLVCTMYASSECYFGVNLNPLCKP---SEVSYTLIPTMAYFEFLPVH-R  376 (612)
T ss_pred             HhCCCCcEEEEECCCCHHHHHHHHHHHcCCCccccccccccceEEEeccCCCCCc---ccceeeecCCcEEEEEeecc-C
Confidence            3337899988877766777777777666 666555 7999996543322221111   1111 222222   222222 1


Q ss_pred             CCC------------------CC---CCCCCCCceEEEccCCcccccCCCchhhhhcccCCccccCceEEEC----CCCc
Q 006111          454 EMG------------------YS---PLDDPPCGEVCVRGKTLFSGYYKNPDLTRESIIDGWFHTGDIGQIL----PNGV  508 (660)
Q Consensus       454 ~~~------------------~~---~~~~~~~Gei~v~g~~~~~gy~~~~~~~~~~~~~g~~~TGDl~~~~----~~G~  508 (660)
                      +++                  .+   .+..|+.-||+|+.   +.|.+.             ||.||+.++.    ..-.
T Consensus       377 ~~~~~~~~~~~~~~~~~~~~~~v~l~ev~~G~~YelvvTt---~~GLyR-------------YrlGDvv~V~Gf~n~~P~  440 (612)
T PLN02620        377 NNGVTNSISLPKSLNEKEQQELVDLVDVKLGQEYELVVTT---YAGLYR-------------YRVGDVLRVAGFKNKAPQ  440 (612)
T ss_pred             cccccccccccccccccccCccccHHHccCCCeEEEEEEe---cCceEE-------------EecCCEEEEeeecCCCce
Confidence            100                  01   12234556788765   222222             8999998874    3346


Q ss_pred             EEEEeccCCeeEcCCCeeecchhHHHHHhcCc--------CcceEEEEec--CCCCeEEEEEEcC
Q 006111          509 VKIIDRKKNLIKISQGEYVALEYLENVYCVAP--------IIEDIWVYGD--SLKSMLVAVVVPC  563 (660)
Q Consensus       509 l~~~GR~~d~i~~~~G~~v~~~~iE~~l~~~p--------~V~~~~V~~~--~~~~~~~a~v~~~  563 (660)
                      |.|++|.+-+..+ .|++.+-.++-.++.+..        .+.|......  ..+...+.++++.
T Consensus       441 ~~Fv~R~~~~lsi-~gEK~tE~~l~~Av~~a~~~l~~~~~~l~dyts~~d~~~~PghYvl~~El~  504 (612)
T PLN02620        441 FSFICRKNVVLSI-DSDKTDEVELQNAVKNAVNHLVPFDASLTEYTSYADTSTIPGHYVLFWELC  504 (612)
T ss_pred             EEEEeecCceeec-ccccCCHHHHHHHHHHHHHhhcccCceeeeEEeccccCCCCCceEEEEEEe
Confidence            9999999999998 799999999887774322        1222332222  3356888888873

>PF14535 AMP-binding_C_2: AMP-binding enzyme C-terminal domain; PDB: 2Y27_A 2Y4N_A 3QOV_B 3S89_D 3LAX_A 2Y4O_B

Probab=96.83  E-value=0.0058  Score=49.96  Aligned_cols=88  Identities=20%  Similarity=0.058  Sum_probs=50.5

Q ss_pred             CeeecchhHHHHHhcCcCcc-eEEEEe--cCCCCeEEEEEEcChhhHHHHHHHCCCCCcHHHHhccHHHHHHHHHHHHHH
Q 006111          524 GEYVALEYLENVYCVAPIIE-DIWVYG--DSLKSMLVAVVVPCEEDTKKWAYSNGHAGSFLELCSLVQLQNYILSELKNA  600 (660)
Q Consensus       524 G~~v~~~~iE~~l~~~p~V~-~~~V~~--~~~~~~~~a~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~  600 (660)
                      |.+|+|.+||++|.++|++. +..++-  ....+.+...|+..++.          ..+..   ...++...+.+.|++.
T Consensus         1 GvnvfP~~Ie~vl~~~~~~~~~y~i~v~~~~~~D~l~v~vE~~~~~----------~~~~~---~~~~l~~~i~~~lk~~   67 (96)
T PF14535_consen    1 GVNVFPSQIEEVLREFPEVSPEYQIVVTREGGLDELTVRVELRPGF----------SDDAE---DLEALAERIAERLKER   67 (96)
T ss_dssp             TEEE-HHHHHHHHCTSTTEEEEEEEEEEEETTEEEEEEEEEESTTC----------CTTHH---HHHHHHHHHHHHHHHH
T ss_pred             CcEECHHHHHHHHHhCcCCCCcEEEEEEcCCCCcEEEEEEEECCcc----------CcchH---HHHHHHHHHHHHHHhh
Confidence            78999999999999999998 444432  33345777888888753          10000   1234555566666554


Q ss_pred             HHhCCCCCceeeeEEEEecCCCCCCCCccccccccch
Q 006111          601 AERNKLRGFEHIKGVILDPRPFDMERDLVTATLKKKR  637 (660)
Q Consensus       601 ~~~~~l~~~~~p~~i~~~~~~~~~~~~P~t~~GKv~R  637 (660)
                      +.   +    .| .|.+++    .+++|++ .||..|
T Consensus        68 lg---v----~~-~V~lv~----~gtLpr~-~~K~~R   91 (96)
T PF14535_consen   68 LG---V----RP-EVELVP----PGTLPRS-EGKAKR   91 (96)
T ss_dssp             HS---S-----E-EEEEE-----TT-S----SSSS-S
T ss_pred             cC---c----eE-EEEEEC----CCCccCC-CCcceE
Confidence            32   2    13 566664    3788997 678776

>COG1541 PaaK Coenzyme F390 synthetase [Coenzyme metabolism]

Probab=93.21  E-value=0.4  Score=50.13  Aligned_cols=142  Identities=13%  Similarity=0.089  Sum_probs=96.4

Q ss_pred             CCceeccccCCCCCCCCCCCCcHHHHH-------HHHHHhCCCCCceeee------ccccCCCCC--ceEEeHHHHHHHH
Q 006111           22 GPVYRNLLASNGFPSVDSDLNTAWDIF-------SMSVQKYPGNRMLGWR------PFVDGKFGP--YVWKTYKEVYEEV   86 (660)
Q Consensus        22 ~~~~~~~~~~~~~~~~~~~~~ti~~~l-------~~~a~~~pd~~a~~~~------~~~d~~~~~--~~~~Ty~ql~~~v   86 (660)
                      +|-||.+-...+  -.|.+++++.|+-       +...+.+|-...-+-.      ....|.+|.  ..-+|+.+....+
T Consensus        42 sPfYr~~f~~~~--v~p~~i~~l~Dl~klP~t~K~~lre~ypf~~~~~~~~~i~~ihaSSGTTGkPt~~~~t~~D~~~wa  119 (438)
T COG1541          42 SPFYRKKFKEAG--VDPDDIKTLEDLAKLPFTTKDDLRENYPFGDFAVPKEEIVRIHASSGTTGKPTVFGYTAKDIERWA  119 (438)
T ss_pred             CHHHHHHHHHcC--CChHHhhCHHHHHhCCCCcHHHHHHhCCcccccccccceEEEEccCCCCCCceeeecCHHHHHHHH
Confidence            455665555442  3355666666654       2234456622211110      001232332  2358999999999


Q ss_pred             HHHHHHHHHcCCCCCCEEEEEeCCch--hHHHHHHHHHhCCCeEEecCCCCChhHHHHHHhcccceEEEEccchhhhhhc
Q 006111           87 LQIVSALRASGAEPGCRVGIYGANCP--QWVEAMEACNALSLICVPLYDTLGPGAVNFILDHAEIDFVFVQDKKVKELLS  164 (660)
Q Consensus        87 ~~lA~~L~~~Gl~~gd~V~l~~~n~~--e~~~~~lA~~~~G~~~vpl~~~~~~~~l~~~l~~~~~~~ii~~~~~~~~~~~  164 (660)
                      ..+|..|...|..+||+|.+.+.-++  .-....+|+.++|++++|+.+. .-+....++++.++.+|.+.....-.+.+
T Consensus       120 ~~~aR~~~~~g~~~gd~v~~~~~yGl~tgg~~~~~ga~rig~~vip~~~g-~~~~~~~l~~df~~tvI~~tps~~l~lae  198 (438)
T COG1541         120 ELLARSLYSAGVRKGDKVQNAYGYGLFTGGLGLHYGAERIGATVIPISGG-NTERQLELMKDFKPTVIAATPSYLLYLAE  198 (438)
T ss_pred             HHHHHHHHHccCCCCCEEEEEeeeccccCCchhHHHHHhhCEEEEccCCc-cHHHHHHHHHhcCCcEEEEChHHHHHHHH
Confidence            99999999999999999988877332  2267889999999999999883 35566788999999999999987766544


Q ss_pred             cc
Q 006111          165 PD  166 (660)
Q Consensus       165 ~~  166 (660)
                      ..
T Consensus       199 ~~  200 (438)
T COG1541         199 EA  200 (438)
T ss_pred             HH
Confidence            44

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	660
1ult_A	541	Crystal Structure Of Tt0168 From Thermus Thermophil		2e-21
3nyq_A	505	Malonyl-Coa Ligase Ternary Product Complex With Met		4e-20
3r44_A	517	Mycobacterium Tuberculosis Fatty Acyl Coa Synthetas		7e-20
1ba3_A	550	Firefly Luciferase In Complex With Bromoform Length		1e-18
3iep_A	551	Firefly Luciferase Apo Structure (P41 Form) Length		2e-18
4g37_A	555	Structure Of Cross-Linked Firefly Luciferase In Sec		6e-18
3tsy_A	979	4-Coumaroyl-Coa Ligase::stilbene Synthase Fusion Pr		1e-17
4fuq_A	503	Crystal Structure Of Apo Matb From Rhodopseudomonas		9e-16
2d1q_A	548	Crystal Structure Of The Thermostable Japanese Fire		1e-15
2d1s_A	548	Crystal Structure Of The Thermostable Japanese Fire		1e-15
2d1t_A	548	Crystal Structure Of The Thermostable Japanese Fire		2e-15
3a9u_A	536	Crystal Structures And Enzymatic Mechanisms Of A Po		3e-15
3t5b_A	396	Crystal Structure Of N-Terminal Domain Of Facl13 Fr		4e-15
4g36_A	555	Photinus Pyralis Luciferase In The Adenylate-Formin		1e-14
3ivr_A	509	Crystal Structure Of Putative Long-Chain-Fatty-Acid		2e-14
3qya_A	582	Crystal Structure Of A Red-Emitter Mutant Of Lampyr		2e-13
2vsq_A	1304	Structure Of Surfactin A Synthetase C (Srfa-C), A N		2e-13
4gxq_A	506	Crystal Structure Of Atp Bound Rpmatb-Bxbclm Chimer		3e-13
4gxr_A	503	Structure Of Atp Bound Rpmatb-Bxbclm Chimera B3 Len		3e-13
4fut_A	503	Crystal Structure Of Atp Bound Matb From Rhodopseud		3e-13
2qvx_X	504	4-Chlorobenzoyl-Coa LigaseSYNTHETASE, I303G MUTATIO		2e-12
2qvz_X	504	4-Chlorobenzoyl-Coa LigaseSYNTHETASE, I303A MUTATIO		8e-12
3cw8_X	504	4-chlorobenzoyl-coa Ligase/synthetase, Bound To 4cb		1e-11
1t5d_X	504	4-Chlorobenzoyl-Coa LigaseSYNTHETASE BOUND TO 4-Chl		3e-11
3dlp_X	504	4-Chlorobenzoyl-Coa LigaseSYNTHETASE, MUTANT D402P,		4e-11
3ipl_A	501	Crystal Structure Of O-Succinylbenzoic Acid-Coa Lig		1e-09
1t5h_X	504	4-Chlorobenzoyl-Coa LigaseSYNTHETASE UNLIGANDED, SE		2e-09
1mdb_A	539	Crystal Structure Of Dhbe In Complex With Dhb-adeny		7e-09
1md9_A	539	Crystal Structure Of Dhbe In Complex With Dhb And A		3e-08
3etc_A	580	2.1 A Structure Of Acyl-Adenylate Synthetase From M		7e-07
3kxw_A	590	The Crystal Structure Of Fatty Acid Amp Ligase From		2e-06
3o82_A	544	Structure Of Base N-Terminal Domain From Acinetobac		3e-06
3rg2_A	617	Structure Of A Two-Domain Nrps Fusion Protein Conta		4e-06
1amu_A	563	Phenylalanine Activating Domain Of Gramicidin Synth		1e-05
4gr5_A	570	Crystal Structure Of Slgn1deltaasub In Complex With		3e-05
2v7b_A	529	Crystal Structures Of A Benzoate Coa Ligase From Bu		3e-05
3g7s_A	549	Crystal Structure Of A Long-Chain-Fatty-Acid-Coa Li		2e-04
3pbk_A	583	Structural And Functional Studies Of Fatty Acyl-Ade		4e-04
4gr4_A	469	Crystal Structure Of Slgn1deltaasub Length = 469		8e-04

>pdb|1ULT|A Chain A, Crystal Structure Of Tt0168 From Thermus Thermophilus Hb8 Length = 541

Iteration: 1
 Score =  101 bits (251), Expect = 2e-21,   Method: Compositional matrix adjust.
 Identities = 149/569 (26%), Positives = 228/569 (40%), Gaps = 124/569 (21%)
Query: 32  NGFPS--VDSDLNTAWDIFSMSVQKYPGNRMLGWRPFVDGKFGPYVWKT-YKEVYEEVLQ 88
           N FPS  +D +LN  WD    +        + G +  V       V +T Y EVY+   +
Sbjct: 7   NAFPSTMMDEELNL-WDFLERAAA------LFGRKEVVSRLHTGEVHRTTYAEVYQRARR 59
Query: 89  IVSALRASGAEPGCRVGIYGANCPQWVEAMEACNALSLICVPLYDTLGPGAVNFILDHAE 148
           ++  LRA G   G RV   G N  + +EA  A   +  +       L P  + +IL+HAE
Sbjct: 60  LMGGLRALGVGVGDRVATLGFNHFRHLEAYFAVPGMGAVLHTANPRLSPKEIAYILNHAE 119
Query: 149 IDFVFVQDKKV---KELLSPDCRSAQRLRVMVCFTSLTAEQKEMAVQTGIKPYSWDEFLH 205
            D V + D  +    E +  + ++ Q   VM       A +  +A +             
Sbjct: 120 -DKVLLFDPNLLPLVEAIRGELKTVQHFVVM----DEKAPEGYLAYEEA----------- 163
Query: 206 LGKVNEMEILPPQPFNICTIMYTSGTSGDPKGVVLTHETI------ATFVSGVDLFLDQF 259
           LG+  +   +P +    C + YT+GT+G PKGVV +H  +      A+ V G  L     
Sbjct: 164 LGEEADPVRVPER--AACGMAYTTGTTGLPKGVVYSHRALVLHSLAASLVDGTAL----- 216
Query: 260 EDKMTVDDVYLSFLPLAHILDRVIEEYFFRRGASVGYYHGDLNALRDD---LMEL----K 312
               +  DV L  +P+ H+       +     A++      L   R D   L+EL     
Sbjct: 217 ----SEKDVVLPVVPMFHV-----NAWCLPYAATLVGAKQVLPGPRLDPASLVELFDGEG 267
Query: 313 PTLLAGVPRVFEKIHEGIKKALEELRPLRRRIFDALYKYKLAWMNMGYKQREASPLADLL 372
            T  AGVP V+  + + ++     L+ LRR                              
Sbjct: 268 VTFTAGVPTVWLALADYLESTGHRLKTLRR------------------------------ 297
Query: 373 AFRKVKARLGGRLRLVISGGAPLSTEVEEFLRVTCCAFLVQGYGLTETCGPTTVCF---- 428
                         LV+ G A   + +  F R+     + QGYGLTET       F    
Sbjct: 298 --------------LVVGGSAAPRSLIARFERMGVE--VRQGYGLTETSPVVVQNFVKSH 341
Query: 429 ------PDEMCMVGTAG-PVSVYSELRLEEVPEMGYS-PLDDPPCGEVCVRGKTLFSGYY 480
                  +++ +    G P+ +   +RL    E G   P D    GEV ++G  +  GYY
Sbjct: 342 LESLSEEEKLTLKAKTGLPIPL---VRLRVADEEGRPVPKDGKALGEVQLKGPWITGGYY 398
Query: 481 KNPDLTRESII-DGWFHTGDIGQILPNGVVKIIDRKKNLIKISQGEYVALEYLENVYCVA 539
            N + TR ++  DG+F TGDI      G V+I DR K+LIK S GE+++   LEN     
Sbjct: 399 GNEEATRSALTPDGFFRTGDIAVWDEEGYVEIKDRLKDLIK-SGGEWISSVDLENALMGH 457
Query: 540 PIIEDIWVYG---DSLKSMLVAVVVPCEE 565
           P +++  V        +   +AVVVP  E
Sbjct: 458 PKVKEAAVVAIPHPKWQERPLAVVVPRGE 486

>pdb|3NYQ|A Chain A, Malonyl-Coa Ligase Ternary Product Complex With Methylmalonyl-Coa And Amp Bound Length = 505

Iteration: 1
 Score = 96.7 bits (239), Expect = 4e-20,   Method: Compositional matrix adjust.
 Identities = 97/333 (29%), Positives = 138/333 (41%), Gaps = 60/333 (18%)
Query: 225 IMYTSGTSGDPKGVVLTHETIATFVSGVDLFLDQFEDKMTVDDVYLSFLPLAHILDRVIE 284
           ++YTSGT+G PKG V+    +AT +   D   D ++   T +DV +  LPL H+   V+ 
Sbjct: 160 VVYTSGTTGPPKGAVIPRRALATTL---DALADAWQ--WTGEDVLVQGLPLFHVHGLVLG 214
Query: 285 EYF-FRRGASVGYY-----HGDLNALRDDLMELKPTLLAGVPRVFEKIHEGIKKALEELR 338
                RRG SV +       G    L D       T+L GVP ++ +I E +    E   
Sbjct: 215 ILGPLRRGGSVRHLGRFSTEGAARELNDGA-----TMLFGVPTMYHRIAETLPADPE--- 266
Query: 339 PLRRRIFDALYKYKLAWMNMGYKQREASPLADLLAFRKVKARLGGRLRLVISGGAPLSTE 398
                                        LA  LA            RL++SG A L   
Sbjct: 267 -----------------------------LAKALAG----------ARLLVSGSAALPVH 287
Query: 399 VEEFLRVTCCAFLVQGYGLTETCGPTTVCFPDEMCMVGTAGPVSVYSELRLEEVPEMGYS 458
             E +       +++ YG+TET   T+V   D     GT G      ELRL E      +
Sbjct: 288 DHERIAAATGRRVIERYGMTETLMNTSVRA-DGEPRAGTVGVPLPGVELRLVEEDGTPIA 346
Query: 459 PLDDPPCGEVCVRGKTLFSGYYKNPDLTRESII-DGWFHTGDIGQILPNGVVKIIDRKKN 517
            LD    GE+ VRG  LF+ Y   PD T  +   DG+F TGD+    P+G V+I+ RK  
Sbjct: 347 ALDGESVGEIQVRGPNLFTEYLNRPDATAAAFTEDGFFRTGDMAVRDPDGYVRIVGRKAT 406
Query: 518 LIKISQGEYVALEYLENVYCVAPIIEDIWVYGD 550
            +  S G  +    +EN     P + +  V G+
Sbjct: 407 DLIKSGGYKIGAGEIENALLEHPEVREAAVTGE 439

>pdb|3R44|A Chain A, Mycobacterium Tuberculosis Fatty Acyl Coa Synthetase Length = 517

Iteration: 1
 Score = 95.9 bits (237), Expect = 7e-20,   Method: Compositional matrix adjust.
 Identities = 89/334 (26%), Positives = 146/334 (43%), Gaps = 72/334 (21%)
Query: 225 IMYTSGTSGDPKGVVLTHETIATFVSGVDLFLD-QFEDKMTVDDVYLSFLPLAHILDRVI 283
           IMYTSGT+G PKGVV THE++ +  S     +D ++ D++      L  LP+ H+     
Sbjct: 175 IMYTSGTTGHPKGVVHTHESVHSAASSWASTIDVRYRDRL------LLPLPMFHVAALTT 228
Query: 284 EEYFFRRGAS-VGYYHGDLNALRDDLMELKPTLLAGVPRVFEKIHEGIKKALEELRPLRR 342
             +   RG + +     D   +   ++E +  +   VP +   +                
Sbjct: 229 VIFSAMRGVTLISMPQFDATKVWSLIVEERVCIGGAVPAILNFM---------------- 272
Query: 343 RIFDALYKYKLAWMNMGYKQREASPLADLLAFRKVKARLGGRLRLVISGGAPLSTEVEEF 402
                               R+    A+L A            R  I+GGAP+    E  
Sbjct: 273 --------------------RQVPEFAELDA---------PDFRYFITGGAPMP---EAL 300
Query: 403 LRVTCCAFL--VQGYGLTETCGPTTVCFP-DEMCMVGTAGPVSVYSELRLEE----VPEM 455
           +++     +  VQGY LTE+CG  T+    D +   G+AG  ++++++ +      + E 
Sbjct: 301 IKIYAAKNIEVVQGYALTESCGGGTLLLSEDALRKAGSAGRATMFTDVAVRGDDGVIREH 360
Query: 456 GYSPLDDPPCGEVCVRGKTLFSGYYKNPDLTRESIIDGWFHTGDIGQILPNGVVKIIDRK 515
           G         GEV ++   L   Y+  P+ TR++  +GWF TGDIG+I   G + I DR 
Sbjct: 361 GE--------GEVVIKSDILLKEYWNRPEATRDAFDNGWFRTGDIGEIDDEGYLYIKDRL 412
Query: 516 KNLIKISQGEYVALEYLENVYCVAPIIEDIWVYG 549
           K++I IS GE V    +E+V    P + ++ V G
Sbjct: 413 KDMI-ISGGENVYPAEIESVIIGVPGVSEVAVIG 445

>pdb|1BA3|A Chain A, Firefly Luciferase In Complex With Bromoform Length = 550

Iteration: 1
 Score = 91.3 bits (225), Expect = 1e-18,   Method: Compositional matrix adjust.
 Identities = 128/500 (25%), Positives = 200/500 (40%), Gaps = 81/500 (16%)
Query: 78  TYKEVYEEVLQIVSALRASGAEPGCRVGIYGANCPQWVEAMEACNALSLICVPLYDTLGP 137
           TY E +E  +++  A++  G     R+ +   N  Q+   +     + +   P  D    
Sbjct: 52  TYAEYFEMSVRLAEAMKRYGLNTNHRIVVCSENSLQFFMPVLGALFIGVAVAPANDIYNE 111
Query: 138 GAVNFILDHAEIDFVFVQDKKVKELLSPDCR--SAQRLRVMVCFTSLTAEQKEMAVQTGI 195
             +   ++ ++   VFV  K ++++L+   +    Q++ +M   T     Q      T  
Sbjct: 112 RELLNSMNISQPTVVFVSKKGLQKILNVQKKLPIIQKIIIMDSKTDYQGFQSMYTFVTSH 171
Query: 196 KPYSWDEFLHLGKVNEMEILPPQPFN----ICTIMYTSGTSGDPKGVVLTHETIAT-FVS 250
            P  ++E+  +          P+ F+    I  IM +SG++G PKGV L H T    F  
Sbjct: 172 LPPGFNEYDFV----------PESFDRDKTIALIMNSSGSTGLPKGVALPHRTACVRFSH 221
Query: 251 GVDLFLDQFEDKMTVDDVYLSFLPLAHILDRVIEEYFFRRGASVGYYHGDLNALRDDLME 310
             D     F +++  D   LS +P           + F    ++GY              
Sbjct: 222 ARDPI---FGNQIIPDTAILSVVPF---------HHGFGMFTTLGY-------------- 255
Query: 311 LKPTLLAGVPRVFEKIHEGIKKALEELRPLRRRIFDALYKYKLAWMNMGYKQREASPLAD 370
               L+ G   V                 L  R  + L+   L      YK + A  +  
Sbjct: 256 ----LICGFRVV-----------------LMYRFEEELFLRSL----QDYKIQSALLVPT 290
Query: 371 LLAFRKVKARLG----GRLRLVISGGAPLSTEV-EEFLRVTCCAFLVQGYGLTETCGPTT 425
           L +F      +       L  + SGGAPLS EV E   +      + QGYGLTET     
Sbjct: 291 LFSFFAKSTLIDKYDLSNLHEIASGGAPLSKEVGEAVAKRFHLPGIRQGYGLTETTSAIL 350
Query: 426 VCFPDEMCMVGTAGPVSVYSELRLEEVPEMGYSPLDDPPCGEVCVRGKTLFSGYYKNPDL 485
           +  P+     G  G V  + E ++ ++ + G + L     GE+CVRG  + SGY  NP+ 
Sbjct: 351 IT-PEGDDKPGAVGKVVPFFEAKVVDL-DTGKT-LGVNQRGELCVRGPMIMSGYVNNPEA 407
Query: 486 TRESI-IDGWFHTGDIGQILPNGVVKIIDRKKNLIKISQGEYVALEYLENVYCVAPIIED 544
           T   I  DGW H+GDI     +    I+DR K+LIK  +G  VA   LE++    P I D
Sbjct: 408 TNALIDKDGWLHSGDIAYWDEDEHFFIVDRLKSLIKY-KGYQVAPAELESILLQHPNIFD 466
Query: 545 IWVYG---DSLKSMLVAVVV 561
             V G   D    +  AVVV
Sbjct: 467 AGVAGLPDDDAGELPAAVVV 486

>pdb|3IEP|A Chain A, Firefly Luciferase Apo Structure (P41 Form) Length = 551

Iteration: 1
 Score = 91.3 bits (225), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 128/500 (25%), Positives = 200/500 (40%), Gaps = 81/500 (16%)
Query: 78  TYKEVYEEVLQIVSALRASGAEPGCRVGIYGANCPQWVEAMEACNALSLICVPLYDTLGP 137
           TY E +E  +++  A++  G     R+ +   N  Q+   +     + +   P  D    
Sbjct: 52  TYAEYFEMSVRLAEAMKRYGLNTNHRIVVCSENSLQFFMPVLGALFIGVAVAPANDIYNE 111
Query: 138 GAVNFILDHAEIDFVFVQDKKVKELLSPDCR--SAQRLRVMVCFTSLTAEQKEMAVQTGI 195
             +   ++ ++   VFV  K ++++L+   +    Q++ +M   T     Q      T  
Sbjct: 112 RELLNSMNISQPTVVFVSKKGLQKILNVQKKLPIIQKIIIMDSKTDYQGFQSMYTFVTSH 171
Query: 196 KPYSWDEFLHLGKVNEMEILPPQPFN----ICTIMYTSGTSGDPKGVVLTHETIAT-FVS 250
            P  ++E+  +          P+ F+    I  IM +SG++G PKGV L H T    F  
Sbjct: 172 LPPGFNEYDFV----------PESFDRDKTIALIMNSSGSTGLPKGVALPHRTACVRFSH 221
Query: 251 GVDLFLDQFEDKMTVDDVYLSFLPLAHILDRVIEEYFFRRGASVGYYHGDLNALRDDLME 310
             D     F +++  D   LS +P           + F    ++GY              
Sbjct: 222 ARDPI---FGNQIIPDTAILSVVPF---------HHGFGMFTTLGY-------------- 255
Query: 311 LKPTLLAGVPRVFEKIHEGIKKALEELRPLRRRIFDALYKYKLAWMNMGYKQREASPLAD 370
               L+ G   V                 L  R  + L+   L      YK + A  +  
Sbjct: 256 ----LICGFRVV-----------------LMYRFEEELFLRSL----QDYKIQSALLVPT 290
Query: 371 LLAFRKVKARLG----GRLRLVISGGAPLSTEV-EEFLRVTCCAFLVQGYGLTETCGPTT 425
           L +F      +       L  + SGGAPLS EV E   +      + QGYGLTET     
Sbjct: 291 LFSFFAKSTLIDKYDLSNLHEIASGGAPLSKEVGEAVAKRFHLPGIRQGYGLTETTSAIL 350
Query: 426 VCFPDEMCMVGTAGPVSVYSELRLEEVPEMGYSPLDDPPCGEVCVRGKTLFSGYYKNPDL 485
           +  P+     G  G V  + E ++ ++ + G + L     GE+CVRG  + SGY  NP+ 
Sbjct: 351 IT-PEGDDKPGAVGKVVPFFEAKVVDL-DTGKT-LGVNQRGELCVRGPMIMSGYVNNPEA 407
Query: 486 TRESI-IDGWFHTGDIGQILPNGVVKIIDRKKNLIKISQGEYVALEYLENVYCVAPIIED 544
           T   I  DGW H+GDI     +    I+DR K+LIK  +G  VA   LE++    P I D
Sbjct: 408 TNALIDKDGWLHSGDIAYWDEDEHFFIVDRLKSLIKY-KGYQVAPAELESILLQHPNIFD 466
Query: 545 IWVYG---DSLKSMLVAVVV 561
             V G   D    +  AVVV
Sbjct: 467 AGVAGLPDDDAGELPAAVVV 486

>pdb|4G37|A Chain A, Structure Of Cross-Linked Firefly Luciferase In Second Catalytic Conformation Length = 555

Iteration: 1
 Score = 89.4 bits (220), Expect = 6e-18,   Method: Compositional matrix adjust.
 Identities = 127/500 (25%), Positives = 200/500 (40%), Gaps = 81/500 (16%)
Query: 78  TYKEVYEEVLQIVSALRASGAEPGCRVGIYGANCPQWVEAMEACNALSLICVPLYDTLGP 137
           TY E +E  +++  A++  G     R+ +   N  Q+   +     + +   P  D    
Sbjct: 57  TYAEYFEMSVRLAEAMKRYGLNTNHRIVVSSENSLQFFMPVLGALFIGVAVAPANDCYNE 116
Query: 138 GAVNFILDHAEIDFVFVQDKKVKELLSPDCR--SAQRLRVMVCFTSLTAEQKEMAVQTGI 195
             +   ++ ++   VFV  K ++++L+   +    Q++ +M   T     Q      T  
Sbjct: 117 RELLNSMNISQPTVVFVSKKGLQKILNVQKKLPIIQKIIIMDSKTDYQGFQSMYTFVTSH 176
Query: 196 KPYSWDEFLHLGKVNEMEILPPQPFN----ICTIMYTSGTSGDPKGVVLTHETIAT-FVS 250
            P  ++E+  +          P+ F+    I  IM +SG++G PKGV L H  +A  F  
Sbjct: 177 LPPGFNEYDFV----------PESFDRDKTIALIMNSSGSTGLPKGVALPHRALAVRFSH 226
Query: 251 GVDLFLDQFEDKMTVDDVYLSFLPLAHILDRVIEEYFFRRGASVGYYHGDLNALRDDLME 310
             D     F +++  D   LS +P           + F    ++GY              
Sbjct: 227 ARDPI---FGNQIAPDTAILSVVPF---------HHGFGMFTTLGY-------------- 260
Query: 311 LKPTLLAGVPRVFEKIHEGIKKALEELRPLRRRIFDALYKYKLAWMNMGYKQREASPLAD 370
               L++G   V                 L  R  + L+   L      YK + A  +  
Sbjct: 261 ----LISGFRVV-----------------LMYRFEEELFLRSL----QDYKIQSALLVPT 295
Query: 371 LLAFRKVKARLG----GRLRLVISGGAPLSTEV-EEFLRVTCCAFLVQGYGLTETCGPTT 425
           L +F      +       L  + SGGAPLS EV E   +      + QGYGLTET     
Sbjct: 296 LFSFLAKSTLIDKYDLSNLHEIASGGAPLSKEVGEAVAKRFHLPGIRQGYGLTETTSAIL 355
Query: 426 VCFPDEMCMVGTAGPVSVYSELRLEEVPEMGYSPLDDPPCGEVCVRGKTLFSGYYKNPDL 485
           +  P      G  G V  + E ++ ++ + G + L     GE+ VRG  + SGY  NP+ 
Sbjct: 356 IT-PKGDDKPGAVGKVVPFFEAKVVDL-DTGKT-LGVNQRGELSVRGPMIMSGYVNNPEA 412
Query: 486 TRESI-IDGWFHTGDIGQILPNGVVKIIDRKKNLIKISQGEYVALEYLENVYCVAPIIED 544
           T   I  DGW H+GDI     +    I+DR K+LIK  +G  VA   LE++    P I D
Sbjct: 413 TNALIDKDGWLHSGDIAYWDEDEHFFIVDRLKSLIKY-KGCQVAPAELESILLQHPNIFD 471
Query: 545 IWVYG---DSLKSMLVAVVV 561
             V G   D    +  AVVV
Sbjct: 472 AGVAGLPDDDAGELPAAVVV 491

>pdb|3TSY|A Chain A, 4-Coumaroyl-Coa Ligase::stilbene Synthase Fusion Protein Length = 979

Iteration: 1
 Score = 88.2 bits (217), Expect = 1e-17,   Method: Compositional matrix adjust.
 Identities = 106/345 (30%), Positives = 154/345 (44%), Gaps = 71/345 (20%)
Query: 218 QPFNICTIMYTSGTSGDPKGVVLTHETIATFVS------GVDLFLDQFEDKMTVDDVYLS 271
            P ++  + Y+SGT+G PKGV+LTH+ + T V+        +L+          DDV L 
Sbjct: 223 SPDDVVALPYSSGTTGLPKGVMLTHKGLVTSVAQQVDGENPNLYFHS-------DDVILC 275
Query: 272 FLPLAHILD-RVIEEYFFRRGASVGYYHG-DLNALRDDLMELKPTLLAGVPRVFEKIHEG 329
            LP+ HI     I     R GA++      ++N L + +   K T+   VP +   I + 
Sbjct: 276 VLPMFHIYALNSIMLCGLRVGAAILIMPKFEINLLLELIQRCKVTVAPMVPPIVLAIAKS 335
Query: 330 IKKALEELRPLRRRIFDALYKYKLAWMNMGYKQREASPLADLLAFRKVKARLGGRLRLVI 389
            +                  KY L+                              +R+V 
Sbjct: 336 SETE----------------KYDLS-----------------------------SIRVVK 350
Query: 390 SGGAPLSTEVEEFLRVTC-CAFLVQGYGLTETCGPT---TVCFPDEMCMV--GTAGPVSV 443
           SG APL  E+E+ +      A L QGYG+TE  GP    ++ F  E   V  G  G V  
Sbjct: 351 SGAAPLGKELEDAVNAKFPNAKLGQGYGMTE-AGPVLAMSLGFAKEPFPVKSGACGTVVR 409
Query: 444 YSELRLEEVPEMGYSPLDDPPCGEVCVRGKTLFSGYYKNPDLTRESI-IDGWFHTGDIGQ 502
            +E+++ + P+ G S   + P GE+C+RG  +  GY  NP  T E+I  DGW HTGDIG 
Sbjct: 410 NAEMKIVD-PDTGDSLSRNQP-GEICIRGHQIMKGYLNNPAATAETIDKDGWLHTGDIGL 467
Query: 503 ILPNGVVKIIDRKKNLIKISQGEYVALEYLENVYCVAPIIEDIWV 547
           I  +  + I+DR K LIK  +G  VA   LE +    P I D+ V
Sbjct: 468 IDDDDELFIVDRLKELIKY-KGFQVAPAELEALLIGHPDITDVAV 511

>pdb|4FUQ|A Chain A, Crystal Structure Of Apo Matb From Rhodopseudomonas Palustris Length = 503

Iteration: 1
 Score = 82.0 bits (201), Expect = 9e-16,   Method: Compositional matrix adjust.
 Identities = 87/334 (26%), Positives = 141/334 (42%), Gaps = 63/334 (18%)
Query: 221 NICTIMYTSGTSGDPKGVVLTHETIAT-FVSGVDLFLDQFEDKMTVDDVYLSFLPLAHIL 279
           ++  I+YTSGT+G  KG  L+H+ +A+  ++ VD +      + T DDV +  LP+ H  
Sbjct: 156 DLAAILYTSGTTGRSKGAXLSHDNLASNSLTLVDYW------RFTPDDVLIHALPIYHTH 209
Query: 280 DRVIEE--YFFRRGASVGYYHGDLNALRDDLMELKPTLLAGVPRVFEKIHEGIKKALEEL 337
              +      F RG+ +     D + + D  +  + T+L GVP  + +            
Sbjct: 210 GLFVASNVTLFARGSXIFLPKFDPDKILD--LXARATVLXGVPTFYTR------------ 255
Query: 338 RPLRRRIFDALYKYKLAWMNMGYKQREASPLADLLAFRKVKARLGGRLRLVISGGAPLST 397
                                            LL   ++     G  RL ISG APL  
Sbjct: 256 ---------------------------------LLQSPRLTKETTGHXRLFISGSAPLLA 282
Query: 398 EVEEFLRVTCCAFLVQGYGLTETCGPTTVCFPDEMCMVGTAGPVSVYSELRLEEVPEMGY 457
           +            +++ YG TET   T+  + D   + G  GP       R+ + PE G 
Sbjct: 283 DTHREWSAKTGHAVLERYGXTETNXNTSNPY-DGDRVPGAVGPALPGVSARVTD-PETGK 340
Query: 458 S-PLDDPPCGEVCVRGKTLFSGYYKNPDLTRESIID-GWFHTGDIGQILPNGVVKIIDRK 515
             P  D   G + V+G  +F GY++ P+ T+    D G+F TGD+G+I   G V I+ R 
Sbjct: 341 ELPRGD--IGXIEVKGPNVFKGYWRXPEKTKSEFRDDGFFITGDLGKIDERGYVHILGRG 398
Query: 516 KNLIKISQGEYVALEYLENVYCVAPIIEDIWVYG 549
           K+L+ I+ G  V  + +E+     P + +  V G
Sbjct: 399 KDLV-ITGGFNVYPKEIESEIDAXPGVVESAVIG 431

>pdb|2D1Q|A Chain A, Crystal Structure Of The Thermostable Japanese Firefly Luciferase Complexed With Mgatp Length = 548

Iteration: 1
 Score = 81.6 bits (200), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 109/394 (27%), Positives = 156/394 (39%), Gaps = 76/394 (19%)
Query: 221 NICTIMYTSGTSGDPKGVVLTHETIAT-FVSGVDLFLDQFEDKMTVDDVYLSFLPLAHIL 279
            +  IM +SG++G PKGV LTHE I T F    D     + ++++     L+ +P  H  
Sbjct: 193 QVALIMNSSGSTGLPKGVQLTHENIVTRFSHARDPI---YGNQVSPGTAVLTVVPFHHGF 249
Query: 280 DRVIEEYFFRRGASVGYYHG-DLNALRDDLMELKPTLLAGVPRVFEKIHEGIKKALEELR 338
                  +   G  V      D       L + K T +  VP +F  +++          
Sbjct: 250 GMFTTLGYLICGFRVVMLTKFDEETFLKTLQDYKCTSVILVPTLFAILNKS--------- 300
Query: 339 PLRRRIFDALYKYKLAWMNMGYKQREASPLADLLAFRKVKARLGGRLRLVISGGAPLSTE 398
                  + L KY L+                              L  + SGGAPLS E
Sbjct: 301 -------ELLNKYDLS-----------------------------NLVEIASGGAPLSKE 324
Query: 399 V-EEFLRVTCCAFLVQGYGLTETCGPTTVCFPDEMCMVGTAGPVSVYSELRLEEVPEMGY 457
           V E   R      + QGYGLTET     +  P+     G +G V    + ++ ++     
Sbjct: 325 VGEAVARRFNLPGVRQGYGLTETTSAIIIT-PEGDDKPGASGKVVPLFKAKVIDLDTK-- 381
Query: 458 SPLDDPPCGEVCVRGKTLFSGYYKNPDLTRESII-DGWFHTGDIGQILPNGVVKIIDRKK 516
             L     GEVCV+G  L  GY  NP+ T+E I  +GW HTGDIG         I+DR K
Sbjct: 382 KSLGPNRRGEVCVKGPMLMKGYVNNPEATKELIDEEGWLHTGDIGYYDEEKHFFIVDRLK 441
Query: 517 NLIKISQGEYVALEYLENVYCVAPIIEDIWVYG--DSLKSMLVAVVVPCEEDTKKWAYSN 574
           +LIK  +G  V    LE+V    P I D  V G  D +   L   VV  E          
Sbjct: 442 SLIKY-KGYQVPPAELESVLLQHPSIFDAGVAGVPDPVAGELPGAVVVLESGKN------ 494
Query: 575 GHAGSFLELCSLVQLQNYILSELKNAAERNKLRG 608
                     +  ++ +Y+ S++ NA    +LRG
Sbjct: 495 ---------MTEKEVMDYVASQVSNA---KRLRG 516

>pdb|2D1S|A Chain A, Crystal Structure Of The Thermostable Japanese Firefly Luciferase Complexed With High-Energy Intermediate Analogue Length = 548

Iteration: 1
 Score = 81.3 bits (199), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 109/394 (27%), Positives = 156/394 (39%), Gaps = 76/394 (19%)
Query: 221 NICTIMYTSGTSGDPKGVVLTHETIAT-FVSGVDLFLDQFEDKMTVDDVYLSFLPLAHIL 279
            +  IM +SG++G PKGV LTHE I T F    D     + ++++     L+ +P  H  
Sbjct: 193 QVALIMNSSGSTGLPKGVQLTHENIVTRFSHARDPI---YGNQVSPGTAVLTVVPFHHGF 249
Query: 280 DRVIEEYFFRRGASVGYYHG-DLNALRDDLMELKPTLLAGVPRVFEKIHEGIKKALEELR 338
                  +   G  V      D       L + K T +  VP +F  +++          
Sbjct: 250 GMFTTLGYLICGFRVVMLTKFDEETFLKTLQDYKCTSVILVPTLFAILNKS--------- 300
Query: 339 PLRRRIFDALYKYKLAWMNMGYKQREASPLADLLAFRKVKARLGGRLRLVISGGAPLSTE 398
                  + L KY L+                              L  + SGGAPLS E
Sbjct: 301 -------ELLNKYDLS-----------------------------NLVEIASGGAPLSKE 324
Query: 399 V-EEFLRVTCCAFLVQGYGLTETCGPTTVCFPDEMCMVGTAGPVSVYSELRLEEVPEMGY 457
           V E   R      + QGYGLTET     +  P+     G +G V    + ++ ++     
Sbjct: 325 VGEAVARRFNLPGVRQGYGLTETTSAIIIT-PEGDDKPGASGKVVPLFKAKVIDLDTK-- 381
Query: 458 SPLDDPPCGEVCVRGKTLFSGYYKNPDLTRESII-DGWFHTGDIGQILPNGVVKIIDRKK 516
             L     GEVCV+G  L  GY  NP+ T+E I  +GW HTGDIG         I+DR K
Sbjct: 382 KSLGPNRRGEVCVKGPMLMKGYVNNPEATKELIDEEGWLHTGDIGYYDEEKHFFIVDRLK 441
Query: 517 NLIKISQGEYVALEYLENVYCVAPIIEDIWVYG--DSLKSMLVAVVVPCEEDTKKWAYSN 574
           +LIK  +G  V    LE+V    P I D  V G  D +   L   VV  E          
Sbjct: 442 SLIKY-KGYQVPPAELESVLLQHPSIFDAGVAGVPDPVAGELPGAVVVLESGKN------ 494
Query: 575 GHAGSFLELCSLVQLQNYILSELKNAAERNKLRG 608
                     +  ++ +Y+ S++ NA    +LRG
Sbjct: 495 ---------MTEKEVMDYVASQVSNA---KRLRG 516

>pdb|2D1T|A Chain A, Crystal Structure Of The Thermostable Japanese Firefly Luciferase Red-Color Emission S286n Mutant Complexed With High-Energy Intermediate Analogue Length = 548

Iteration: 1
 Score = 81.3 bits (199), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 109/394 (27%), Positives = 156/394 (39%), Gaps = 76/394 (19%)
Query: 221 NICTIMYTSGTSGDPKGVVLTHETIAT-FVSGVDLFLDQFEDKMTVDDVYLSFLPLAHIL 279
            +  IM +SG++G PKGV LTHE I T F    D     + ++++     L+ +P  H  
Sbjct: 193 QVALIMNSSGSTGLPKGVQLTHENIVTRFSHARDPI---YGNQVSPGTAVLTVVPFHHGF 249
Query: 280 DRVIEEYFFRRGASVGYYHG-DLNALRDDLMELKPTLLAGVPRVFEKIHEGIKKALEELR 338
                  +   G  V      D       L + K T +  VP +F  +++          
Sbjct: 250 GMFTTLGYLICGFRVVMLTKFDEETFLKTLQDYKCTNVILVPTLFAILNKS--------- 300
Query: 339 PLRRRIFDALYKYKLAWMNMGYKQREASPLADLLAFRKVKARLGGRLRLVISGGAPLSTE 398
                  + L KY L+                              L  + SGGAPLS E
Sbjct: 301 -------ELLNKYDLS-----------------------------NLVEIASGGAPLSKE 324
Query: 399 V-EEFLRVTCCAFLVQGYGLTETCGPTTVCFPDEMCMVGTAGPVSVYSELRLEEVPEMGY 457
           V E   R      + QGYGLTET     +  P+     G +G V    + ++ ++     
Sbjct: 325 VGEAVARRFNLPGVRQGYGLTETTSAIIIT-PEGDDKPGASGKVVPLFKAKVIDLDTK-- 381
Query: 458 SPLDDPPCGEVCVRGKTLFSGYYKNPDLTRESII-DGWFHTGDIGQILPNGVVKIIDRKK 516
             L     GEVCV+G  L  GY  NP+ T+E I  +GW HTGDIG         I+DR K
Sbjct: 382 KSLGPNRRGEVCVKGPMLMKGYVNNPEATKELIDEEGWLHTGDIGYYDEEKHFFIVDRLK 441
Query: 517 NLIKISQGEYVALEYLENVYCVAPIIEDIWVYG--DSLKSMLVAVVVPCEEDTKKWAYSN 574
           +LIK  +G  V    LE+V    P I D  V G  D +   L   VV  E          
Sbjct: 442 SLIKY-KGYQVPPAELESVLLQHPSIFDAGVAGVPDPVAGELPGAVVVLESGKN------ 494
Query: 575 GHAGSFLELCSLVQLQNYILSELKNAAERNKLRG 608
                     +  ++ +Y+ S++ NA    +LRG
Sbjct: 495 ---------MTEKEVMDYVASQVSNA---KRLRG 516

>pdb|3A9U|A Chain A, Crystal Structures And Enzymatic Mechanisms Of A Populus Tomentosa 4- Coumarate--Coa Ligase Length = 536

Iteration: 1
 Score = 80.5 bits (197), Expect = 3e-15,   Method: Compositional matrix adjust.
 Identities = 69/178 (38%), Positives = 94/178 (52%), Gaps = 23/178 (12%)
Query: 385 LRLVISGGAPLSTEVEEFLRVTCC-AFLVQGYGLTETCGPTTVCFPDEMCMV-------- 435
           LR++ SGGAPL  E+E+ +R     A L QGYG+TE  GP        MC+         
Sbjct: 299 LRMIKSGGAPLGKELEDTVRAKFPQARLGQGYGMTE-AGPVLA-----MCLAFAKEPFDI 352
Query: 436 --GTAGPVSVYSELRLEEVPEMGYS-PLDDPPCGEVCVRGKTLFSGYYKNPDLTRESI-I 491
             G  G V   +E+++ + PE G S P + P  GE+C+RG  +  GY  +P+ T  +I  
Sbjct: 353 KPGACGTVVRNAEMKIVD-PETGASLPRNQP--GEICIRGDQIMKGYLNDPEATSRTIDK 409
Query: 492 DGWFHTGDIGQILPNGVVKIIDRKKNLIKISQGEYVALEYLENVYCVAPIIEDIWVYG 549
           +GW HTGDIG I  +  + I+DR K LIK  +G  VA   LE +    P I D  V G
Sbjct: 410 EGWLHTGDIGYIDDDDELFIVDRLKELIKY-KGFQVAPAELEALLIAHPEISDAAVVG 466

>pdb|3T5B|A Chain A, Crystal Structure Of N-Terminal Domain Of Facl13 From Mycobacterium Tuberculosis Length = 396

Iteration: 1
 Score = 80.1 bits (196), Expect = 4e-15,   Method: Compositional matrix adjust.
 Identities = 76/298 (25%), Positives = 126/298 (42%), Gaps = 71/298 (23%)
Query: 225 IMYTSGTSGDPKGVVLTHETIATFVSGVDLFLD-QFEDKMTVDDVYLSFLPLAHILDRVI 283
           IMYTSGT+G PKGVV THE++ +  S     +D ++ D++      L  LP+ H+     
Sbjct: 161 IMYTSGTTGHPKGVVHTHESVHSAASSWASTIDVRYRDRL------LLPLPMFHVAALTT 214
Query: 284 EEYFFRRGAS-VGYYHGDLNALRDDLMELKPTLLAGVPRVFEKIHEGIKKALEELRPLRR 342
             +   RG + +     D   +   ++E +  +   VP +   +                
Sbjct: 215 VIFSAMRGVTLISMPQFDATKVWSLIVEERVCIGGAVPAILNFM---------------- 258
Query: 343 RIFDALYKYKLAWMNMGYKQREASPLADLLAFRKVKARLGGRLRLVISGGAPLSTEVEEF 402
                               R+    A+L A            R  I+GGAP+    E  
Sbjct: 259 --------------------RQVPEFAELDA---------PDFRYFITGGAPMP---EAL 286
Query: 403 LRVTCCAFL--VQGYGLTETCGPTTVCFP-DEMCMVGTAGPVSVYSELRLEE----VPEM 455
           +++     +  VQGY LTE+CG  T+    D +   G+AG  ++++++ +      + E 
Sbjct: 287 IKIYAAKNIEVVQGYALTESCGGGTLLLSEDALRKAGSAGRATMFTDVAVRGDDGVIREH 346
Query: 456 GYSPLDDPPCGEVCVRGKTLFSGYYKNPDLTRESIIDGWFHTGDIGQILPNGVVKIID 513
           G         GEV ++   L   Y+  P+ TR++  +GWF TGDIG+I   G + I D
Sbjct: 347 GE--------GEVVIKSDILLKEYWNRPEATRDAFDNGWFRTGDIGEIDDEGYLYIKD 396

>pdb|4G36|A Chain A, Photinus Pyralis Luciferase In The Adenylate-Forming Conformation Bound To Dlsa Length = 555

Iteration: 1
 Score = 78.2 bits (191), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 68/183 (37%), Positives = 91/183 (49%), Gaps = 9/183 (4%)
Query: 384 RLRLVISGGAPLSTEV-EEFLRVTCCAFLVQGYGLTETCGPTTVCFPDEMCMVGTAGPVS 442
            L  + SGGAPLS EV E   +      + QGYGLTET     +  P+     G  G V 
Sbjct: 313 NLHEIASGGAPLSKEVGEAVAKRFHLPGIRQGYGLTETTSAILIT-PEGDDKPGAVGKVV 371
Query: 443 VYSELRLEEVPEMGYSPLDDPPCGEVCVRGKTLFSGYYKNPDLTRESI-IDGWFHTGDIG 501
            + E ++ ++ + G + L     GE+CVRG  + SGY  NP+ T   I  DGW H+GDI 
Sbjct: 372 PFFEAKVVDL-DTGKT-LGVNQRGELCVRGPMIMSGYVNNPEATNALIDKDGWLHSGDIA 429
Query: 502 QILPNGVVKIIDRKKNLIKISQGEYVALEYLENVYCVAPIIEDIWVYG---DSLKSMLVA 558
               +    I+DR K+LIK  +G  VA   LE++    P I D  V G   D    +  A
Sbjct: 430 YWDEDEHFFIVDRLKSLIKY-KGYQVAPAELESILLQHPNIFDAGVAGLPDDDAGELPAA 488
Query: 559 VVV 561
           VVV
Sbjct: 489 VVV 491

>pdb|3IVR|A Chain A, Crystal Structure Of Putative Long-Chain-Fatty-Acid Coa Ligase From Rhodopseudomonas Palustris Cga009 Length = 509

Iteration: 1
 Score = 77.4 bits (189), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 115/478 (24%), Positives = 176/478 (36%), Gaps = 84/478 (17%)
Query: 78  TYKEVYEEVLQIVSALRASGAEPGCRVGIYGANCPQWVEAMEACNALSLICVPLYDTLGP 137
           T+++      ++ S L   G   G RV I   NC + +E + A   +  I +P       
Sbjct: 33  THRDYLARAERLASGLLRDGVHTGDRVAILSQNCSEMIELIGAVALIGAILLP------- 85
Query: 138 GAVNFILDHAEIDFVFVQDKKVKELLSPDCRSAQRLRVMVCFTSLTAEQKEMAVQTGIKP 197
             VN+ L+  EI FV         +   D R      V     SL   +K  A+  G  P
Sbjct: 86  --VNYRLNADEIAFVLGDGAPSVVVAGTDYRDI----VAGVLPSLGGVKKAYAIGDGSGP 139
Query: 198 YSWDEFLHLGKVNEMEILPPQPFNICTIMYTSGTSGDPKGVVLTHETIATFVSGVDLFLD 257
           ++   F  L              +   I++T+   G P+G +++   +    S +   +D
Sbjct: 140 FA--PFKDLASDTPFSAPEFGAADGFVIIHTAAVGGRPRGALISQGNLLIAQSSL---VD 194
Query: 258 QFEDKMTVDDVYLSFLPLAHILDRVIEEYFFRRG-ASVGYYHGDLNALRDDLMELKPTLL 316
            +  ++T  DV L  LPL H+    +     + G ASV     D      D+   K T++
Sbjct: 195 AW--RLTEADVNLGMLPLFHVTGLGLMLTLQQAGGASVIAAKFDPAQAARDIEAHKVTVM 252
Query: 317 AGVPRVFEKIHEGIKKALEELRPLRRRIFDALYKYKLAWMNMGYKQREASPLADLLAFRK 376
           A                  E  P+   I D                 +A+P A L + R 
Sbjct: 253 A------------------EFAPMLGNILD-----------------QAAP-AQLASLRA 276
Query: 377 VKARLGGRLRLVISGGAPLSTEVEEFLRVTCCAFLVQGYGLTETCGPTTVC-FPDEMCMV 435
           V              G      +E F      A     +G +ET G +T   + D     
Sbjct: 277 VT-------------GLDTPETIERFEATCPNATFWATFGQSETSGLSTFAPYRDR---- 319
Query: 436 GTAGPVSVYSEL--RLEEVPEMGYSPLDDPPCGEVCVRGKTLFSGYYKNPDLTRESIIDG 493
               P S    L  R   V +    PL     GE+ +RG T+F GY+ N   T+ +  +G
Sbjct: 320 ----PKSAGRPLFWRTVAVVDAEDRPLPPGEVGEIVLRGPTVFKGYWNNAAATQHAFRNG 375
Query: 494 WFHTGDIGQILPNGVVKIIDR--KKNLIKISQGEYVALEYLENVYCVAPIIEDIWVYG 549
           W HTGD+G+   +G +    R  +K LIK + GE V    +E      P I D  V G
Sbjct: 376 WHHTGDMGRFDADGYLFYAGRAPEKELIK-TGGENVYPAEVEGALKQHPAIADAVVIG 432

>pdb|3QYA|A Chain A, Crystal Structure Of A Red-Emitter Mutant Of Lampyris Turkestanicus Luciferase Length = 582

Iteration: 1
 Score = 74.3 bits (181), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 65/185 (35%), Positives = 88/185 (47%), Gaps = 7/185 (3%)
Query: 385 LRLVISGGAPLSTEV-EEFLRVTCCAFLVQGYGLTETCGPTTVCFPDEMCMVGTAGPVSV 443
           L  + SGGAPL+ EV E   +      + QGYGLTET     +         G  G V  
Sbjct: 343 LHEIASGGAPLAKEVGEAVAKRFKLPGIRQGYGLTETTSAIIITPRGRDDKPGACGKVVP 402
Query: 444 YSELRLEEVPEMGYSPLDDPPCGEVCVRGKTLFSGYYKNPDLTRESI-IDGWFHTGDIGQ 502
           +   ++ ++ + G + L     GE+CV+G  +  GY  NP+ T   I  DGW H+GDI  
Sbjct: 403 FFSAKIVDL-DTGKT-LGVNQRGELCVKGPMIMKGYVNNPEATSALIDKDGWLHSGDIAY 460
Query: 503 ILPNGVVKIIDRKKNLIKISQGEYVALEYLENVYCVAPIIEDIWVYG--DSLKSMLVAVV 560
              +G   I+DR K+LIK  +G  V    LE++    P I D  V G  D     L A V
Sbjct: 461 YDKDGYFFIVDRLKSLIKY-KGYQVPPAELESILLQHPFIFDAGVAGIPDPDAGELPAAV 519
Query: 561 VPCEE 565
           V  EE
Sbjct: 520 VVLEE 524

>pdb|2VSQ|A Chain A, Structure Of Surfactin A Synthetase C (Srfa-C), A Nonribosomal Peptide Synthetase Termination Module Length = 1304

Iteration: 1
 Score = 74.3 bits (181), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 120/510 (23%), Positives = 187/510 (36%), Gaps = 100/510 (19%)
Query: 78  TYKEVYEEVLQIVSALRASGAEPGCRVGIYGANCPQWVEAMEACNALSLICVPLYDTLGP 137
           +Y+E+ EE  +I   L+  GA  G  V +Y     + V  +          +P+   L  
Sbjct: 491 SYRELDEEANRIARRLQKHGAGKGSVVALYTKRSLELVIGILGVLKAGAAYLPVDPKLPE 550
Query: 138 GAVNFILDHAEIDFVFVQDKKVKELLSPDCRSAQRLRVMVCFTSLTAEQKEMAVQTGIKP 197
             ++++L           D     LL+      Q   +    T+L  + +    +    P
Sbjct: 551 DRISYML----------ADSAAACLLTHQEMKEQAAELPYTGTTLFIDDQTRFEEQASDP 600
Query: 198 YSWDEFLHLGKVNEMEILPPQPFNICTIMYTSGTSGDPKGVVLTHETIATFVSGVDLFLD 257
            +              I P  P     IMYTSGT+G PKG + TH  I   V  VD    
Sbjct: 601 AT-------------AIDPNDP---AYIMYTSGTTGKPKGNITTHANIQGLVKHVDYM-- 642
Query: 258 QFEDKMTVDDVYLSFLPLAHILDRVIEEYFFRRGASVGYYHGDLNALRDDLMELKPTLLA 317
            F D+    D +LS           +  Y F    +  +Y   LNA R  + + + TLL 
Sbjct: 643 AFSDQ----DTFLS-----------VSNYAFD-AFTFDFYASMLNAARLIIAD-EHTLLD 685
Query: 318 GVPRVFEKIHEGIKKALEELRPLRRRIFDALYKYKLAWMNMGYKQREASPLADLLAFRKV 377
                 E++ + I +    +      +F+ L      WM                     
Sbjct: 686 T-----ERLTDLILQENVNVMFATTALFNLLTDAGEDWMK-------------------- 720
Query: 378 KARLGGRLRLVISGGAPLST-EVEEFLRVTCCAFLVQGYGLTETCGPTTVC----FPDEM 432
                  LR ++ GG   S   V + LR+     L+  YG TE     T       PD +
Sbjct: 721 ------GLRCILFGGERASVPHVRKALRIMGPGKLINCYGPTEGTVFATAHVVHDLPDSI 774
Query: 433 CMVGTAGPVSVYSELRLEEVPEMGYSPLDDPPCGEVCVRGKTLFSGYYKNPDLTRESIID 492
             +    P+S  S   L E  ++   P      GE+C+ G  +  GY    DLT+E  I+
Sbjct: 775 SSLPIGKPISNASVYILNEQSQL--QPFG--AVGELCISGMGVSKGYVNRADLTKEKFIE 830
Query: 493 GWF-------HTGDIGQILPNGVVKIIDRKKNLIKISQGEYVALEYLENVYCVAPIIEDI 545
             F        TGD+ + LP+G ++   R  + +KI +G  + LE +E      P ++D 
Sbjct: 831 NPFKPGETLYRTGDLARWLPDGTIEYAGRIDDQVKI-RGHRIELEEIEKQLQEYPGVKDA 889
Query: 546 WVYGD-------SLKSMLVAVVVPCEEDTK 568
            V  D       S+ + LV       ED K
Sbjct: 890 VVVADRHESGDASINAYLVNRTQLSAEDVK 919

>pdb|4GXQ|A Chain A, Crystal Structure Of Atp Bound Rpmatb-Bxbclm Chimera B1 Length = 506

Iteration: 1
 Score = 73.6 bits (179), Expect = 3e-13,   Method: Compositional matrix adjust.
 Identities = 79/304 (25%), Positives = 127/304 (41%), Gaps = 62/304 (20%)
Query: 221 NICTIMYTSGTSGDPKGVVLTHETIAT-FVSGVDLFLDQFEDKMTVDDVYLSFLPLAHIL 279
           ++  I+YTSGT+G   G +L+H+ +A+  ++ VD +      + T DDV +  LP+ H  
Sbjct: 156 DLAAILYTSGTTGRSXGAMLSHDNLASNSLTLVDYW------RFTPDDVLIHALPIYHTH 209
Query: 280 DRVIEE--YFFRRGASVGYYHGDLNALRDDLMELKPTLLAGVPRVFEKIHEGIKKALEEL 337
              +      F RG+ +     D + + D  +  + T+L GVP  + +            
Sbjct: 210 GLFVASNVTLFARGSMIFLPXFDPDXILD--LMARATVLMGVPTFYTR------------ 255
Query: 338 RPLRRRIFDALYKYKLAWMNMGYKQREASPLADLLAFRKVKARLGGRLRLVISGGAPLST 397
                                            LL   ++     G +RL ISG APL  
Sbjct: 256 ---------------------------------LLQSPRLTXETTGHMRLFISGSAPLLA 282
Query: 398 EVEEFLRVTCCAFLVQGYGLTETCGPTTVCFPDEMCMVGTAGPVSVYSELRLEEVPEMGY 457
           +            +++ YG+TET   T+  + D   + G  GP       R+ + PE G 
Sbjct: 283 DTHREWSAXTGHAVLERYGMTETNMNTSNPY-DGDRVPGAVGPALPGVSARVTD-PETGX 340
Query: 458 S-PLDDPPCGEVCVRGKTLFSGYYKNPDLT-RESIIDGWFHTGDIGQILPNGVVKIIDRK 515
             P  D   G + V G  +F GY++ P+ T  E   DG+F TGD+G I   G V I+ R 
Sbjct: 341 ELPRGD--IGMIEVXGPNVFXGYWRMPEXTXSEFRDDGFFITGDLGXIDERGYVHILGRG 398
Query: 516 KNLI 519
            +L+
Sbjct: 399 XDLV 402

>pdb|4GXR|A Chain A, Structure Of Atp Bound Rpmatb-Bxbclm Chimera B3 Length = 503

Iteration: 1
 Score = 73.6 bits (179), Expect = 3e-13,   Method: Compositional matrix adjust.
 Identities = 79/304 (25%), Positives = 127/304 (41%), Gaps = 62/304 (20%)
Query: 221 NICTIMYTSGTSGDPKGVVLTHETIAT-FVSGVDLFLDQFEDKMTVDDVYLSFLPLAHIL 279
           ++  I+YTSGT+G   G +L+H+ +A+  ++ VD +      + T DDV +  LP+ H  
Sbjct: 156 DLAAILYTSGTTGRSXGAMLSHDNLASNSLTLVDYW------RFTPDDVLIHALPIYHTH 209
Query: 280 DRVIEE--YFFRRGASVGYYHGDLNALRDDLMELKPTLLAGVPRVFEKIHEGIKKALEEL 337
              +      F RG+ +     D + + D  +  + T+L GVP  + +            
Sbjct: 210 GLFVASNVTLFARGSMIFLPXFDPDXILD--LMARATVLMGVPTFYTR------------ 255
Query: 338 RPLRRRIFDALYKYKLAWMNMGYKQREASPLADLLAFRKVKARLGGRLRLVISGGAPLST 397
                                            LL   ++     G +RL ISG APL  
Sbjct: 256 ---------------------------------LLQSPRLTXETTGHMRLFISGSAPLLA 282
Query: 398 EVEEFLRVTCCAFLVQGYGLTETCGPTTVCFPDEMCMVGTAGPVSVYSELRLEEVPEMGY 457
           +            +++ YG+TET   T+  + D   + G  GP       R+ + PE G 
Sbjct: 283 DTHREWSAXTGHAVLERYGMTETNMNTSNPY-DGDRVPGAVGPALPGVSARVTD-PETGX 340
Query: 458 S-PLDDPPCGEVCVRGKTLFSGYYKNPDLT-RESIIDGWFHTGDIGQILPNGVVKIIDRK 515
             P  D   G + V G  +F GY++ P+ T  E   DG+F TGD+G I   G V I+ R 
Sbjct: 341 ELPRGD--IGMIEVXGPNVFXGYWRMPEXTXSEFRDDGFFITGDLGXIDERGYVHILGRG 398
Query: 516 KNLI 519
            +L+
Sbjct: 399 XDLV 402

>pdb|4FUT|A Chain A, Crystal Structure Of Atp Bound Matb From Rhodopseudomonas Palustris Length = 503

Iteration: 1
 Score = 73.6 bits (179), Expect = 3e-13,   Method: Compositional matrix adjust.
 Identities = 79/304 (25%), Positives = 127/304 (41%), Gaps = 62/304 (20%)
Query: 221 NICTIMYTSGTSGDPKGVVLTHETIAT-FVSGVDLFLDQFEDKMTVDDVYLSFLPLAHIL 279
           ++  I+YTSGT+G   G +L+H+ +A+  ++ VD +      + T DDV +  LP+ H  
Sbjct: 156 DLAAILYTSGTTGRSXGAMLSHDNLASNSLTLVDYW------RFTPDDVLIHALPIYHTH 209
Query: 280 DRVIEE--YFFRRGASVGYYHGDLNALRDDLMELKPTLLAGVPRVFEKIHEGIKKALEEL 337
              +      F RG+ +     D + + D  +  + T+L GVP  + +            
Sbjct: 210 GLFVASNVTLFARGSMIFLPXFDPDXILD--LMARATVLMGVPTFYTR------------ 255
Query: 338 RPLRRRIFDALYKYKLAWMNMGYKQREASPLADLLAFRKVKARLGGRLRLVISGGAPLST 397
                                            LL   ++     G +RL ISG APL  
Sbjct: 256 ---------------------------------LLQSPRLTXETTGHMRLFISGSAPLLA 282
Query: 398 EVEEFLRVTCCAFLVQGYGLTETCGPTTVCFPDEMCMVGTAGPVSVYSELRLEEVPEMGY 457
           +            +++ YG+TET   T+  + D   + G  GP       R+ + PE G 
Sbjct: 283 DTHREWSAXTGHAVLERYGMTETNMNTSNPY-DGDRVPGAVGPALPGVSARVTD-PETGX 340
Query: 458 S-PLDDPPCGEVCVRGKTLFSGYYKNPDLT-RESIIDGWFHTGDIGQILPNGVVKIIDRK 515
             P  D   G + V G  +F GY++ P+ T  E   DG+F TGD+G I   G V I+ R 
Sbjct: 341 ELPRGD--IGMIEVXGPNVFXGYWRMPEXTXSEFRDDGFFITGDLGXIDERGYVHILGRG 398
Query: 516 KNLI 519
            +L+
Sbjct: 399 XDLV 402

>pdb|2QVX|X Chain X, 4-Chlorobenzoyl-Coa LigaseSYNTHETASE, I303G MUTATION, BOUND TO 3- Chlorobenzoate Length = 504

Iteration: 1
 Score = 71.2 bits (173), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 109/475 (22%), Positives = 172/475 (36%), Gaps = 74/475 (15%)
Query: 78  TYKEVYEEVLQIVSALRASGAEPGCRVGIYGANCPQWVEAMEACNALSLICVPLYDTLGP 137
           T+ E+   V  + + L A G  P  RV +   N    V A+ A + L  +   L   L  
Sbjct: 31  THAELRARVEAVAARLHADGLRPQQRVAVVAPNSADVVIAILALHRLGAVPALLNPRLKS 90
Query: 138 GAVNFILDHAEIDF-VFVQDKKVKELLSPDCRSAQRLRVMVCFTSLTAEQKEMAVQTGIK 196
             +  ++   E+   V    ++V + +      A+     + F        E        
Sbjct: 91  AELAELIKRGEMTAAVIAVGRQVADAIFQSGSGAR-----IIFLGDLVRDGE-------- 137
Query: 197 PYSWDEFLHLGKVNEMEILPPQPFNICTIMYTSGTSGDPKGVVLTHETIATFVSGVDLFL 256
           PYS+        + + +  P QP     I YTSGT+G PK  ++      + V    LF+
Sbjct: 138 PYSYGP-----PIEDPQREPAQP---AFIFYTSGTTGLPKAAIIPQRAAESRV----LFM 185
Query: 257 D-QFEDKMTVDDVYLSFLPLAHILDRVIEEYFFRRGASVGYYHGDLNALRDDLMELKPTL 315
             Q   +    +V L  +PL H+               VG++   + AL  D        
Sbjct: 186 STQVGLRHGRHNVVLGLMPLYHV---------------VGFFAVLVAALALD-------- 222
Query: 316 LAGVPRVFEKIHEGIKKALEELRPLRRRIFDALYKYKLAWMNMGYKQREASPLADLLAFR 375
                        G    +EE RP+     DAL   +   +   +            A  
Sbjct: 223 -------------GTYVVVEEFRPV-----DALQLVQQEQVTSLFATPTHLDALAAAAAH 264
Query: 376 KVKARLGGRLRLVISGGAPLSTEVEEFLRVTCCAFLVQGYGLTETCGPTTVCFPDEMCMV 435
              +     LR V   GA +   V E +        V GYG TE      +  P      
Sbjct: 265 AGSSLKLDSLRHVTFAGATMPDAVLETVHQHLPGEKVNGYGTTEAMNSLYMRQPK----T 320
Query: 436 GTAGPVSVYSELRLEEVPEMGYSPLDDPPCGEVCVRGK-TLFSGYYKNPDLTRESIIDGW 494
           GT      +SE+R+  +       + +   GE+ V    + F GY   P  T E + DGW
Sbjct: 321 GTEMAPGFFSEVRIVRIGGGVDEIVANGEEGELIVAASDSAFVGYLNQPQATAEKLQDGW 380
Query: 495 FHTGDIGQILPNGVVKIIDRKKNLIKISQGEYVALEYLENVYCVAPIIEDIWVYG 549
           + T D+    P G V+I+ R  ++I IS GE +    +E V   AP + ++ V G
Sbjct: 381 YRTSDVAVWTPEGTVRILGRVDDMI-ISGGENIHPSEIERVLGTAPGVTEVVVIG 434

>pdb|2QVZ|X Chain X, 4-Chlorobenzoyl-Coa LigaseSYNTHETASE, I303A MUTATION, BOUND TO 3- Chlorobenzoate Length = 504

Iteration: 1
 Score = 68.9 bits (167), Expect = 8e-12,   Method: Compositional matrix adjust.
 Identities = 108/475 (22%), Positives = 171/475 (36%), Gaps = 74/475 (15%)
Query: 78  TYKEVYEEVLQIVSALRASGAEPGCRVGIYGANCPQWVEAMEACNALSLICVPLYDTLGP 137
           T+ E+   V  + + L A G  P  RV +   N    V A+ A + L  +   L   L  
Sbjct: 31  THAELRARVEAVAARLHADGLRPQQRVAVVAPNSADVVIAILALHRLGAVPALLNPRLKS 90
Query: 138 GAVNFILDHAEIDF-VFVQDKKVKELLSPDCRSAQRLRVMVCFTSLTAEQKEMAVQTGIK 196
             +  ++   E+   V    ++V + +      A+     + F        E        
Sbjct: 91  AELAELIKRGEMTAAVIAVGRQVADAIFQSGSGAR-----IIFLGDLVRDGE-------- 137
Query: 197 PYSWDEFLHLGKVNEMEILPPQPFNICTIMYTSGTSGDPKGVVLTHETIATFVSGVDLFL 256
           PYS+        + + +  P QP     I YTSGT+G PK  ++      + V    LF+
Sbjct: 138 PYSYGP-----PIEDPQREPAQP---AFIFYTSGTTGLPKAAIIPQRAAESRV----LFM 185
Query: 257 D-QFEDKMTVDDVYLSFLPLAHILDRVIEEYFFRRGASVGYYHGDLNALRDDLMELKPTL 315
             Q   +    +V L  +PL H+               VG++   + AL  D        
Sbjct: 186 STQVGLRHGRHNVVLGLMPLYHV---------------VGFFAVLVAALALD-------- 222
Query: 316 LAGVPRVFEKIHEGIKKALEELRPLRRRIFDALYKYKLAWMNMGYKQREASPLADLLAFR 375
                        G    +EE RP+     DAL   +   +   +            A  
Sbjct: 223 -------------GTYVVVEEFRPV-----DALQLVQQEQVTSLFATPTHLDALAAAAAH 264
Query: 376 KVKARLGGRLRLVISGGAPLSTEVEEFLRVTCCAFLVQGYGLTETCGPTTVCFPDEMCMV 435
              +     LR V   GA +   V E +        V  YG TE      +  P      
Sbjct: 265 AGSSLKLDSLRHVTFAGATMPDAVLETVHQHLPGEKVNAYGTTEAMNSLYMRQPK----T 320
Query: 436 GTAGPVSVYSELRLEEVPEMGYSPLDDPPCGEVCVRGK-TLFSGYYKNPDLTRESIIDGW 494
           GT      +SE+R+  +       + +   GE+ V    + F GY   P  T E + DGW
Sbjct: 321 GTEMAPGFFSEVRIVRIGGGVDEIVANGEEGELIVAASDSAFVGYLNQPQATAEKLQDGW 380
Query: 495 FHTGDIGQILPNGVVKIIDRKKNLIKISQGEYVALEYLENVYCVAPIIEDIWVYG 549
           + T D+    P G V+I+ R  ++I IS GE +    +E V   AP + ++ V G
Sbjct: 381 YRTSDVAVWTPEGTVRILGRVDDMI-ISGGENIHPSEIERVLGTAPGVTEVVVIG 434

>pdb|3CW8|X Chain X, 4-chlorobenzoyl-coa Ligase/synthetase, Bound To 4cba-adenylate Length = 504

Iteration: 1
 Score = 68.6 bits (166), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 108/475 (22%), Positives = 172/475 (36%), Gaps = 74/475 (15%)
Query: 78  TYKEVYEEVLQIVSALRASGAEPGCRVGIYGANCPQWVEAMEACNALSLICVPLYDTLGP 137
           T+ E+   V  + + L A G  P  RV +   N    V A+ A + L  +   L   L  
Sbjct: 31  THAELRARVEAVAARLHADGLRPQQRVAVVAPNSADVVIAILALHRLGAVPALLNPRLKS 90
Query: 138 GAVNFILDHAEIDF-VFVQDKKVKELLSPDCRSAQRLRVMVCFTSLTAEQKEMAVQTGIK 196
             +  ++   E+   V    ++V + +      A+     + F        E        
Sbjct: 91  AELAELIKRGEMTAAVIAVGRQVADAIFQSGSGAR-----IIFLGDLVRDGE-------- 137
Query: 197 PYSWDEFLHLGKVNEMEILPPQPFNICTIMYTSGTSGDPKGVVLTHETIATFVSGVDLFL 256
           PYS+        + + +  P QP     I YTSGT+G PK  ++      + V    LF+
Sbjct: 138 PYSYGP-----PIEDPQREPAQP---AFIFYTSGTTGLPKAAIIPQRAAESRV----LFM 185
Query: 257 D-QFEDKMTVDDVYLSFLPLAHILDRVIEEYFFRRGASVGYYHGDLNALRDDLMELKPTL 315
             Q   +    +V L  +PL H+               VG++   + AL  D        
Sbjct: 186 STQVGLRHGRHNVVLGLMPLYHV---------------VGFFAVLVAALALD-------- 222
Query: 316 LAGVPRVFEKIHEGIKKALEELRPLRRRIFDALYKYKLAWMNMGYKQREASPLADLLAFR 375
                        G    +EE RP+     DAL   +   +   +            A  
Sbjct: 223 -------------GTYVVIEEFRPV-----DALQLVQQEQVTSLFATPTHLDALAAAAAH 264
Query: 376 KVKARLGGRLRLVISGGAPLSTEVEEFLRVTCCAFLVQGYGLTETCGPTTVCFPDEMCMV 435
              +     LR V   GA +   V E +        V  YG TE      +  P      
Sbjct: 265 AGSSLKLDSLRHVTFAGATMPDAVLETVHQHLPGEKVNIYGTTEAMNSLYMRQPK----T 320
Query: 436 GTAGPVSVYSELRLEEVPEMGYSPLDDPPCGEVCVRGK-TLFSGYYKNPDLTRESIIDGW 494
           GT      +SE+R+  +       + +   GE+ V    + F GY   P+ T E + DGW
Sbjct: 321 GTEMAPGFFSEVRIVRIGGGVDEIVANGEEGELIVAASDSAFVGYLNQPEATAEKLQDGW 380
Query: 495 FHTGDIGQILPNGVVKIIDRKKNLIKISQGEYVALEYLENVYCVAPIIEDIWVYG 549
           + T D+    P G V+I+ R  ++I IS GE +    +E V   AP + ++ V G
Sbjct: 381 YRTSDVAVWTPEGTVRILGRVDDMI-ISGGENIHPSEIERVLGTAPGVTEVVVIG 434

>pdb|1T5D|X Chain X, 4-Chlorobenzoyl-Coa LigaseSYNTHETASE BOUND TO 4-Chlorobenzoate Length = 504

Iteration: 1
 Score = 67.0 bits (162), Expect = 3e-11,   Method: Compositional matrix adjust.
 Identities = 108/475 (22%), Positives = 171/475 (36%), Gaps = 74/475 (15%)
Query: 78  TYKEVYEEVLQIVSALRASGAEPGCRVGIYGANCPQWVEAMEACNALSLICVPLYDTLGP 137
           T+ E+   V  + + L A G  P  RV +   N    V A+ A + L  +   L   L  
Sbjct: 31  THAELRARVEAVAARLHADGLRPQQRVAVVAPNSADVVIAILALHRLGAVPALLNPRLKS 90
Query: 138 GAVNFILDHAEIDF-VFVQDKKVKELLSPDCRSAQRLRVMVCFTSLTAEQKEMAVQTGIK 196
             +  ++   E+   V    ++V + +      A+     + F        E        
Sbjct: 91  AELAELIKRGEMTAAVIAVGRQVADAIFQSGSGAR-----IIFLGDLVRDGE-------- 137
Query: 197 PYSWDEFLHLGKVNEMEILPPQPFNICTIMYTSGTSGDPKGVVLTHETIATFVSGVDLFL 256
           PYS+        + + +  P QP     I YTSGT+G PK  ++      + V    LF+
Sbjct: 138 PYSYGP-----PIEDPQREPAQP---AFIFYTSGTTGLPKAAIIPQRAAESRV----LFM 185
Query: 257 D-QFEDKMTVDDVYLSFLPLAHILDRVIEEYFFRRGASVGYYHGDLNALRDDLMELKPTL 315
             Q   +    +V L  +PL H+               VG++   + AL  D        
Sbjct: 186 STQVGLRHGRHNVVLGLMPLYHV---------------VGFFAVLVAALALD-------- 222
Query: 316 LAGVPRVFEKIHEGIKKALEELRPLRRRIFDALYKYKLAWMNMGYKQREASPLADLLAFR 375
                        G    +EE RP+     DAL   +   +   +            A  
Sbjct: 223 -------------GTYVVVEEFRPV-----DALQLVQQEQVTSLFATPTHLDALAAAAAH 264
Query: 376 KVKARLGGRLRLVISGGAPLSTEVEEFLRVTCCAFLVQGYGLTETCGPTTVCFPDEMCMV 435
              +     LR V   GA +   V E +        V  YG TE      +  P      
Sbjct: 265 AGSSLKLDSLRHVTFAGATMPDAVLETVHQHLPGEKVNIYGTTEAMNSLYMRQPK----T 320
Query: 436 GTAGPVSVYSELRLEEVPEMGYSPLDDPPCGEVCVRGK-TLFSGYYKNPDLTRESIIDGW 494
           GT      +SE+R+  +       + +   GE+ V    + F GY   P  T E + DGW
Sbjct: 321 GTEMAPGFFSEVRIVRIGGGVDEIVANGEEGELIVAASDSAFVGYLNQPQATAEKLQDGW 380
Query: 495 FHTGDIGQILPNGVVKIIDRKKNLIKISQGEYVALEYLENVYCVAPIIEDIWVYG 549
           + T D+    P G V+I+ R  ++I IS GE +    +E V   AP + ++ V G
Sbjct: 381 YRTSDVAVWTPEGTVRILGRVDDMI-ISGGENIHPSEIERVLGTAPGVTEVVVIG 434

>pdb|3DLP|X Chain X, 4-Chlorobenzoyl-Coa LigaseSYNTHETASE, MUTANT D402P, BOUND To 4cb Length = 504

Iteration: 1
 Score = 66.6 bits (161), Expect = 4e-11,   Method: Compositional matrix adjust.
 Identities = 108/475 (22%), Positives = 171/475 (36%), Gaps = 74/475 (15%)
Query: 78  TYKEVYEEVLQIVSALRASGAEPGCRVGIYGANCPQWVEAMEACNALSLICVPLYDTLGP 137
           T+ E+   V  + + L A G  P  RV +   N    V A+ A + L  +   L   L  
Sbjct: 31  THAELRARVEAVAARLHADGLRPQQRVAVVAPNSADVVIAILALHRLGAVPALLNPRLKS 90
Query: 138 GAVNFILDHAEIDF-VFVQDKKVKELLSPDCRSAQRLRVMVCFTSLTAEQKEMAVQTGIK 196
             +  ++   E+   V    ++V + +      A+     + F        E        
Sbjct: 91  AELAELIKRGEMTAAVIAVGRQVADAIFQSGSGAR-----IIFLGDLVRDGE-------- 137
Query: 197 PYSWDEFLHLGKVNEMEILPPQPFNICTIMYTSGTSGDPKGVVLTHETIATFVSGVDLFL 256
           PYS+        + + +  P QP     I YTSGT+G PK  ++      + V    LF+
Sbjct: 138 PYSYGP-----PIEDPQREPAQP---AFIFYTSGTTGLPKAAIIPQRAAESRV----LFM 185
Query: 257 D-QFEDKMTVDDVYLSFLPLAHILDRVIEEYFFRRGASVGYYHGDLNALRDDLMELKPTL 315
             Q   +    +V L  +PL H+               VG++   + AL  D        
Sbjct: 186 STQVGLRHGRHNVVLGLMPLYHV---------------VGFFAVLVAALALD-------- 222
Query: 316 LAGVPRVFEKIHEGIKKALEELRPLRRRIFDALYKYKLAWMNMGYKQREASPLADLLAFR 375
                        G    +EE RP+     DAL   +   +   +            A  
Sbjct: 223 -------------GTYVVVEEFRPV-----DALQLVQQEQVTSLFATPTHLDALAAAAAH 264
Query: 376 KVKARLGGRLRLVISGGAPLSTEVEEFLRVTCCAFLVQGYGLTETCGPTTVCFPDEMCMV 435
              +     LR V   GA +   V E +        V  YG TE      +  P      
Sbjct: 265 AGSSLKLDSLRHVTFAGATMPDAVLETVHQHLPGEKVNIYGTTEAMNSLYMRQPK----T 320
Query: 436 GTAGPVSVYSELRLEEVPEMGYSPLDDPPCGEVCVRGK-TLFSGYYKNPDLTRESIIDGW 494
           GT      +SE+R+  +       + +   GE+ V    + F GY   P  T E + DGW
Sbjct: 321 GTEMAPGFFSEVRIVRIGGGVDEIVANGEEGELIVAASDSAFVGYLNQPQATAEKLQDGW 380
Query: 495 FHTGDIGQILPNGVVKIIDRKKNLIKISQGEYVALEYLENVYCVAPIIEDIWVYG 549
           + T D+    P G V+I+ R  ++I IS GE +    +E V   AP + ++ V G
Sbjct: 381 YRTSDVAVWTPEGTVRILGRVPDMI-ISGGENIHPSEIERVLGTAPGVTEVVVIG 434

>pdb|3IPL|A Chain A, Crystal Structure Of O-Succinylbenzoic Acid-Coa Ligase From Staphylococcus Aureus Subsp. Aureus Mu50 Length = 501

Iteration: 1
 Score = 61.6 bits (148), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 51/163 (31%), Positives = 82/163 (50%), Gaps = 14/163 (8%)
Query: 384 RLRLVISGGAPLS-TEVEEFLRVTCCAFLVQGYGLTETCGPTTVCFPDEM-CMVGTAGPV 441
            L+ ++ GGA LS T +E  L+     +    +G+TETC       P+ +     T G  
Sbjct: 275 NLQKILLGGAKLSATMIETALQYNLPIY--NSFGMTETCSQFLTATPEMLHARPDTVGMP 332
Query: 442 SVYSELRLEEVPEMGYSPLDDPPCGEVCVRGKTLFSGYYKNPDLTRESIIDGWFHTGDIG 501
           S   +++++   + G+        GE+ ++G  + +GY    DLT  +  +G+F+TGDI 
Sbjct: 333 SANVDVKIKNPNKEGH--------GELMIKGANVMNGYLYPTDLTG-TFENGYFNTGDIA 383
Query: 502 QILPNGVVKIIDRKKNLIKISQGEYVALEYLENVYCVAPIIED 544
           +I   G V I DR+K+LI IS GE +    +E V    P I D
Sbjct: 384 EIDHEGYVMIYDRRKDLI-ISGGENIYPYQIETVAKQFPGISD 425

>pdb|1T5H|X Chain X, 4-Chlorobenzoyl-Coa LigaseSYNTHETASE UNLIGANDED, SELENOMETHIONINE Length = 504

Iteration: 1
 Score = 61.2 bits (147), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 110/477 (23%), Positives = 172/477 (36%), Gaps = 78/477 (16%)
Query: 78  TYKEVYEEVLQIVSALRASGAEPGCRVGIYGANCPQWVEAMEACNALSLICVPLYDTLGP 137
           T+ E+   V  + + L A G  P  RV +   N    V A+ A + L  +         P
Sbjct: 31  THAELRARVEAVAARLHADGLRPQQRVAVVAPNSADVVIAILALHRLGAV---------P 81
Query: 138 GAVNFILDHAEIDFVFVQDKKVKELLSPDCRSAQRLRVMVCFTSLTAEQKEMA---VQTG 194
             +N  L  AE+  +  + +    +++   + A  +     F S +  +       V+ G
Sbjct: 82  ALLNPRLKSAELAELIKRGEXTAAVIAVGRQVADAI-----FQSGSGARIIFLGDLVRDG 136
Query: 195 IKPYSWDEFLHLGKVNEMEILPPQPFNICTIMYTSGTSGDPKGVVLTHETIATFVSGVDL 254
            +PYS+        + + +  P QP     I YTSGT+G PK  ++      + V    L
Sbjct: 137 -EPYSYGP-----PIEDPQREPAQP---AFIFYTSGTTGLPKAAIIPQRAAESRV----L 183
Query: 255 FLD-QFEDKMTVDDVYLSFLPLAHILDRVIEEYFFRRGASVGYYHGDLNALRDDLMELKP 313
           F   Q   +    +V L   PL H+               VG++   + AL  D      
Sbjct: 184 FXSTQVGLRHGRHNVVLGLXPLYHV---------------VGFFAVLVAALALD------ 222
Query: 314 TLLAGVPRVFEKIHEGIKKALEELRPLRRRIFDALYKYKLAWMNMGYKQREASPLADLLA 373
                          G    +EE RP+     DAL   +   +   +            A
Sbjct: 223 ---------------GTYVVVEEFRPV-----DALQLVQQEQVTSLFATPTHLDALAAAA 262
Query: 374 FRKVKARLGGRLRLVISGGAPLSTEVEEFLRVTCCAFLVQGYGLTETCGPTTVCFPDEMC 433
                +     LR V   GA     V E +        V  YG TE         P    
Sbjct: 263 AHAGSSLKLDSLRHVTFAGATXPDAVLETVHQHLPGEKVNIYGTTEAXNSLYXRQPK--- 319
Query: 434 MVGTAGPVSVYSELRLEEVPEMGYSPLDDPPCGEVCVRGK-TLFSGYYKNPDLTRESIID 492
             GT      +SE+R+  +       + +   GE+ V    + F GY   P  T E + D
Sbjct: 320 -TGTEXAPGFFSEVRIVRIGGGVDEIVANGEEGELIVAASDSAFVGYLNQPQATAEKLQD 378
Query: 493 GWFHTGDIGQILPNGVVKIIDRKKNLIKISQGEYVALEYLENVYCVAPIIEDIWVYG 549
           GW+ T D+    P G V+I+ R  + I IS GE +    +E V   AP + ++ V G
Sbjct: 379 GWYRTSDVAVWTPEGTVRILGRVDDXI-ISGGENIHPSEIERVLGTAPGVTEVVVIG 434

>pdb|1MDB|A Chain A, Crystal Structure Of Dhbe In Complex With Dhb-adenylate Length = 539

Iteration: 1
 Score = 59.3 bits (142), Expect = 7e-09,   Method: Compositional matrix adjust.
 Identities = 48/162 (29%), Positives = 73/162 (45%), Gaps = 6/162 (3%)
Query: 385 LRLVISGGAPLSTEVEEFLRVTCCAFLVQGYGLTETCGPTTVCFPDEMCMVGTAG-PVSV 443
           L+++  GGA  S E    ++      L Q +G+ E     T     E  +V T G P+S 
Sbjct: 300 LQVLQVGGAKFSAEAARRVKAVFGCTLQQVFGMAEGLVNYTRLDDPEEIIVNTQGKPMSP 359
Query: 444 YSELRLEEVPEMGYSPLDDPPCGEVCVRGKTLFSGYYKNPDLTRESII-DGWFHTGDIGQ 502
           Y E R+ +  +    P +    G +  RG     GYYK  +    S   DG++ TGDI +
Sbjct: 360 YDESRVWDDHDRDVKPGE---TGHLLTRGPYTIRGYYKAEEHNAASFTEDGFYRTGDIVR 416
Query: 503 ILPNGVVKIIDRKKNLIKISQGEYVALEYLENVYCVAPIIED 544
           +  +G + +  R K+ I    GE VA E +EN     P + D
Sbjct: 417 LTRDGYIVVEGRAKDQIN-RGGEKVAAEEVENHLLAHPAVHD 457

>pdb|1MD9|A Chain A, Crystal Structure Of Dhbe In Complex With Dhb And Amp Length = 539

Iteration: 1
 Score = 57.0 bits (136), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 48/162 (29%), Positives = 71/162 (43%), Gaps = 6/162 (3%)
Query: 385 LRLVISGGAPLSTEVEEFLRVTCCAFLVQGYGLTETCGPTTVCFPDEMCMVGTAG-PVSV 443
           L+++  GGA  S E    ++      L Q +G  E     T     E  +V T G P S 
Sbjct: 300 LQVLQVGGAKFSAEAARRVKAVFGCTLQQVFGXAEGLVNYTRLDDPEEIIVNTQGKPXSP 359
Query: 444 YSELRLEEVPEMGYSPLDDPPCGEVCVRGKTLFSGYYKNPDLTRESII-DGWFHTGDIGQ 502
           Y E R+ +  +    P +    G +  RG     GYYK  +    S   DG++ TGDI +
Sbjct: 360 YDESRVWDDHDRDVKPGE---TGHLLTRGPYTIRGYYKAEEHNAASFTEDGFYRTGDIVR 416
Query: 503 ILPNGVVKIIDRKKNLIKISQGEYVALEYLENVYCVAPIIED 544
           +  +G + +  R K+ I    GE VA E +EN     P + D
Sbjct: 417 LTRDGYIVVEGRAKDQIN-RGGEKVAAEEVENHLLAHPAVHD 457

>pdb|3ETC|A Chain A, 2.1 A Structure Of Acyl-Adenylate Synthetase From Methanosarcina Acetivorans Containing A Link Between Lys256 And Cys298 Length = 580

Iteration: 1
 Score = 52.8 bits (125), Expect = 7e-07,   Method: Compositional matrix adjust.
 Identities = 48/149 (32%), Positives = 71/149 (47%), Gaps = 21/149 (14%)
Query: 385 LRLVISGGAPLSTEV-EEFLRVTCCAFLVQGYGLTETCGPTTVCFPDEMCMVGTAG-PVS 442
           L+  +  G PL+ EV   FL  T    L++G+G TET   T   FP      G+ G P  
Sbjct: 343 LKYAVVAGEPLNPEVFNRFLEFTGIK-LMEGFGQTETV-VTIATFPWMEPKPGSIGKPTP 400
Query: 443 VYS------ELRLEEVPEMG---YSPLDDPPCGEVCVRGKTLFSGYYKNPDLTRESIIDG 493
            Y       + RL EV E G    + ++  P G        LF  Y K+P+ T E+  DG
Sbjct: 401 GYKIELMDRDGRLCEVGEEGEIVINTMEGKPVG--------LFVHYGKDPERTEETWHDG 452
Query: 494 WFHTGDIGQILPNGVVKIIDRKKNLIKIS 522
           ++HTGD+  +  +G +  + R  ++IK S
Sbjct: 453 YYHTGDMAWMDEDGYLWFVGRADDIIKTS 481

>pdb|3KXW|A Chain A, The Crystal Structure Of Fatty Acid Amp Ligase From Legionella Pneumophila Length = 590

Iteration: 1
 Score = 51.2 bits (121), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 94/473 (19%), Positives = 180/473 (38%), Gaps = 80/473 (16%)
Query: 78  TYKEVYEEVLQIVSALRASGAEPGCRVGIYGANCPQWVEAMEACNALSLICVPLYDTLGP 137
           TY+++ +    I + L+A GA+PG RV +  A     ++A   C     I VP+Y    P
Sbjct: 42  TYEQLDQHAKAIAATLQAEGAKPGDRVLLLFAPGLPLIQAFLGCLYAGCIAVPIY----P 97
Query: 138 GAVNFILDHAEIDFVFVQDKKVKELLSPDCRSAQRLRVMVCFTSLTAEQKEMAVQTGIKP 197
            A   +LD A             + +  + +    L +       TA++     +    P
Sbjct: 98  PAQEKLLDKA-------------QRIVTNSKPVIVLXIADHIKKFTADELNTNPKFLKIP 144
Query: 198 YSWDEFLHLGKVNEMEILPPQPFNICTIMYTSGTSGDPKGVVLTHETIATFVSGVDLFLD 257
               E + L + +  +    +  +I  + YTSG++  PKGV ++H  +   +  ++    
Sbjct: 145 AIALESIELNRSSSWQPTSIKSNDIAFLQYTSGSTXHPKGVXVSHHNL---LDNLNKIFT 201
Query: 258 QFEDKMTVDDVYLSFLPLAH-------ILDRVIEEYFFRRGASVGYYHGDLNALRDDLME 310
            F      + +  S+LP  H       IL  +         +   +    L+ L+  + +
Sbjct: 202 SFH--XNDETIIFSWLPPHHDXGLIGCILTPIYGGIQAIXXSPFSFLQNPLSWLK-HITK 258
Query: 311 LKPTLLAG--------VPRVFEKIHEGIK-----KALEELRPLRRRIFDALYKYKLAWMN 357
            K T+           V R+ E+  EG+       A     P+R    +  Y+   A+  
Sbjct: 259 YKATISGSPNFAYDYCVKRIREEKKEGLDLSSWVTAFNGAEPVREETXEHFYQ---AFKE 315
Query: 358 MGYKQREASPLADLLAFRKVKARLGGRLRLVISGGAPLSTEVEEFLRVTCCAFLVQGYGL 417
            G+++    P   L               L+++GG P S+    +  +T      Q + +
Sbjct: 316 FGFRKEAFYPCYGL-----------AEATLLVTGGTPGSS----YKTLTLAKEQFQDHRV 360
Query: 418 TETCGPTTVCFPDEMCMVGTAGPVSVYSELRLEEVPEMGYSPLDDPPCGEVCVRGKTLFS 477
                 +    P    +V +  P+    E+++ +   +   P D    GE+ V+  ++  
Sbjct: 361 HFADDNS----PGSYKLVSSGNPI---QEVKIIDPDTL--IPCDFDQVGEIWVQSNSVAK 411
Query: 478 GYYKNPDLTRESIIDG---------WFHTGDIGQILPNGVVKIIDRKKNLIKI 521
           GY+  P+ TR +             +  TGD+G +  N +  +  R K+LI I
Sbjct: 412 GYWNQPEETRHAFAGKIKDDERSAIYLRTGDLGFLHENELY-VTGRIKDLIII 463

>pdb|3O82|A Chain A, Structure Of Base N-Terminal Domain From Acinetobacter Baumannii Bound To 5'-O-[n-(2,3-Dihydroxybenzoyl)sulfamoyl] Adenosine Length = 544

Iteration: 1
 Score = 50.4 bits (119), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 47/182 (25%), Positives = 85/182 (46%), Gaps = 23/182 (12%)
Query: 385 LRLVISGGAP----LSTEVEEFLRVTCCAFLVQGYGLTE-TCGPTTVCFPDEMCMVGTAG 439
           L+L+  GGA     L+ +V E L       L Q +G+ E     T +   DE        
Sbjct: 309 LKLLQVGGASFPESLARQVPEVLNCK----LQQVFGMAEGLVNYTRLDDSDEQIFTTQGR 364
Query: 440 PVSVYSELRLEEVPEMGYSPLDDPPCGEVCVRGKTLFSGYYKNPDLTRESII-DGWFHTG 498
           P+S   E++   + +  Y  + +   G +  RG   F GYY++P+   +    D ++++G
Sbjct: 365 PISSDDEIK---IVDEQYREVPEGEIGMLATRGPYTFCGYYQSPEHNSQVFDEDNYYYSG 421
Query: 499 DIGQILPNGVVKIIDRKKNLIKISQGEYVALEYLENVYCVAPIIEDIWVYGDSLKSMLVA 558
           D+ Q  P+G ++++ R K+ I    GE +A E +E +  + P         + + + LVA
Sbjct: 422 DLVQRTPDGNLRVVGRIKDQIN-RGGEKIASEEIEKLILLHP---------EVMHAALVA 471
Query: 559 VV 560
           +V
Sbjct: 472 IV 473

>pdb|3RG2|A Chain A, Structure Of A Two-Domain Nrps Fusion Protein Containing The Ente Adenylation Domain And Entb Aryl-Carrier Protein From Enterobactin Biosynthesis Length = 617

Iteration: 1
 Score = 50.1 bits (118), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 44/160 (27%), Positives = 72/160 (45%), Gaps = 6/160 (3%)
Query: 385 LRLVISGGAPLSTEVEEFLRVTCCAFLVQGYGLTETCGPTTVCFPDEMCMVGTAG-PVSV 443
           L+L+  GGA LS  +   +       L Q +G+ E     T        ++ T G P+  
Sbjct: 304 LKLLQVGGARLSATLAARIPAEIGCQLQQVFGMAEGLVNYTRLDDSAEKIIHTQGYPMCP 363
Query: 444 YSELRLEEVPEMGYSPLDDPPCGEVCVRGKTLFSGYYKNPDLTRESI-IDGWFHTGDIGQ 502
             E+    V +   +PL     G +  RG   F GYYK+P     +   +G++ +GD+  
Sbjct: 364 DDEVW---VADAEGNPLPQGEVGRLMTRGPYTFRGYYKSPQHNASAFDANGFYCSGDLIS 420
Query: 503 ILPNGVVKIIDRKKNLIKISQGEYVALEYLENVYCVAPII 542
           I P G + +  R+K+ I    GE +A E +EN+    P +
Sbjct: 421 IDPEGYITVQGREKDQIN-RGGEKIAAEEIENLLLRHPAV 459

>pdb|1AMU|A Chain A, Phenylalanine Activating Domain Of Gramicidin Synthetase 1 In A Complex With Amp And Phenylalanine Length = 563

Iteration: 1
 Score = 48.9 bits (115), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 42/140 (30%), Positives = 65/140 (46%), Gaps = 27/140 (19%)
Query: 412 VQGYGLTET--CGPTTVCFPDEMCM-VGTAGPVS------VYSELRLEEVPEMGYSPLDD 462
           +  YG TET  C  T V   + +   V    P+       V   L+L+ V E        
Sbjct: 320 INAYGPTETTICATTWVATKETIGHSVPIGAPIQNTQIYIVDENLQLKSVGE-------- 371
Query: 463 PPCGEVCVRGKTLFSGYYKNPDLTRESIIDGWF-------HTGDIGQILPNGVVKIIDRK 515
              GE+C+ G+ L  GY+K P+LT +  +D  F        TGD  + L +G ++ + R 
Sbjct: 372 --AGELCIGGEGLARGYWKRPELTSQKFVDNPFVPGEKLYKTGDQARWLSDGNIEYLGRI 429
Query: 516 KNLIKISQGEYVALEYLENV 535
            N +KI +G  V LE +E++
Sbjct: 430 DNQVKI-RGHRVELEEVESI 448

>pdb|4GR5|A Chain A, Crystal Structure Of Slgn1deltaasub In Complex With Ampcpp Length = 570

Iteration: 1
 Score = 47.4 bits (111), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 42/147 (28%), Positives = 63/147 (42%), Gaps = 10/147 (6%)
Query: 385 LRLVISGGAPLST-EVEEFLRVTCCAFLVQGYGLTETCGPTTVCFPDEMCMVGTAGPVSV 443
           +R  I+GG P S   V +  R      L  GYG  E+ G TT        + GTA P+ V
Sbjct: 328 VRYAITGGEPASVPHVAKARRDHPALRLGNGYGPAESMGFTTHHAVVAGDLSGTALPIGV 387
Query: 444 YSELRLEEVPEMGYSPLDDPPCGEVCVRGKTLFSGYYKNPDLTRESII---------DGW 494
               +   V +    P  +   GE+ V G  L  GY   P LT E  +         +  
Sbjct: 388 PLAGKRAYVLDDDLKPAANGALGELYVAGAGLAHGYVSRPALTAERFVADPFAGPGGERM 447
Query: 495 FHTGDIGQILPNGVVKIIDRKKNLIKI 521
           + TGD+ +   +GV++ + R  + +KI
Sbjct: 448 YRTGDLARRRADGVLEYVGRADDQVKI 474

>pdb|2V7B|A Chain A, Crystal Structures Of A Benzoate Coa Ligase From Burkholderia Xenovorans Lb400 Length = 529

Iteration: 1
 Score = 47.4 bits (111), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 76/311 (24%), Positives = 119/311 (38%), Gaps = 57/311 (18%)
Query: 221 NICTIMYTSGTSGDPKGVVLTHETIATFVSGVDLFLDQFEDKMTVDDVYLSFLPLAHILD 280
           +I   +Y+SG++G PKG V TH   A      +L+       +  +DV  S   L     
Sbjct: 184 DIAFWLYSSGSTGKPKGTVHTH---ANLYWTAELYAKPILG-IAENDVVFSAAKL----- 234
Query: 281 RVIEEYFFRRGASVGYYHGDLNALRDDLMELKPTLLAGVPRVFEKIHEGIKKALEELRPL 340
                 FF  G   G            LM  +PT             + I   L E RP 
Sbjct: 235 ------FFAYGLGNGLTFPLSVGATAILMAERPTA------------DAIFARLVEHRPT 276
Query: 341 RRRIFDALYKYKLAWMNMGYKQREASPLADLLAFRKVKARLGGRLRLVISGGAPLSTEVE 400
                  LY                   A++L    + AR    +R+  S G  L  E+ 
Sbjct: 277 VFYGVPTLY-------------------ANMLVSPNLPARADVAIRICTSAGEALPREIG 317
Query: 401 EFLRVTCCAFLVQGYGLTETCGPTTVCFPDEMCMV--GTAG-PVSVYSELRLEEVPEMGY 457
           E         ++ G G TE      +   +    V  GT G PV  Y E+ L +  E G+
Sbjct: 318 ERFTAHFGCEILDGIGSTEML---HIFLSNRAGAVEYGTTGRPVPGY-EIELRD--EAGH 371
Query: 458 SPLDDPPCGEVCVRGKTLFSGYYKNPDLTRESIIDGWFHTGDIGQILPNGVVKIIDRKKN 517
           + + D   G++ ++G +    Y+ N + +R + +  W  +GD    LPNG      R  +
Sbjct: 372 A-VPDGEVGDLYIKGPSAAVMYWNNREKSRATFLGEWIRSGDKYCRLPNGCYVYAGRSDD 430
Query: 518 LIKISQGEYVA 528
           ++K+S G+YV+
Sbjct: 431 MLKVS-GQYVS 440

>pdb|3G7S|A Chain A, Crystal Structure Of A Long-Chain-Fatty-Acid-Coa Ligase (Fadd1) From Archaeoglobus Fulgidus Length = 549

Iteration: 1
 Score = 44.3 bits (103), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 43/145 (29%), Positives = 62/145 (42%), Gaps = 14/145 (9%)
Query: 413 QGYGLTETCGPTTVCFPDEMCMVGTAGPVSVYSELR---LEEVPEMGYSPLDDPPCGEVC 469
           Q +G TE C   T   P  +    T G      EL+   LE+  E+G         GE+ 
Sbjct: 333 QIWGXTEACPXVTTNPPLRLDKSTTQGVPXSDIELKVISLEDGRELGVGE-----SGEIV 387
Query: 470 VRGKTLFSGYYKNPDLTRESII-----DGWFHTGDIGQILPNGVVKIIDRKKNLIKISQG 524
           +RG  +F GY+K     +E          +F TGD+G I   G +   DR K +IK  +G
Sbjct: 388 IRGPNIFKGYWKREKENQECWWYDEKGRKFFRTGDVGFIDEEGFLHFQDRVKEVIKY-KG 446
Query: 525 EYVALEYLENVYCVAPIIEDIWVYG 549
             +A   LE +      + D+ V G
Sbjct: 447 YTIAPFELEALLXKHEAVXDVAVIG 471

>pdb|3PBK|A Chain A, Structural And Functional Studies Of Fatty Acyl-Adenylate Ligases From E. Coli And L. Pneumophila Length = 583

Iteration: 1
 Score = 43.5 bits (101), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 23/71 (32%), Positives = 37/71 (52%), Gaps = 1/71 (1%)
Query: 451 EVPEMGYSPLDDPPCGEVCVRGKTLFSGYYKNPDLTRESIIDGWFHTGDIGQILPNGVVK 510
           E+      P+ +   G +C+ G +L SGY+ +     E    GW  TGD+G +L +G + 
Sbjct: 396 EIRNEAGXPVAERVVGHICISGPSLXSGYFGDQVSQDEIAATGWLDTGDLGYLL-DGYLY 454
Query: 511 IIDRKKNLIKI 521
           +  R K+LI I
Sbjct: 455 VTGRIKDLIII 465

>pdb|4GR4|A Chain A, Crystal Structure Of Slgn1deltaasub Length = 469

Iteration: 1
 Score = 42.4 bits (98), Expect = 8e-04,   Method: Compositional matrix adjust.
 Identities = 40/141 (28%), Positives = 59/141 (41%), Gaps = 10/141 (7%)
Query: 385 LRLVISGGAPLST-EVEEFLRVTCCAFLVQGYGLTETCGPTTVCFPDEMCMVGTAGPVSV 443
           +R  I+GG P S   V +  R      L  GYG  E+ G TT        + GTA P+ V
Sbjct: 328 VRYAITGGEPASVPHVAKARRDHPALRLGNGYGPAESMGFTTHHAVVAGDLSGTALPIGV 387
Query: 444 YSELRLEEVPEMGYSPLDDPPCGEVCVRGKTLFSGYYKNPDLTRESII---------DGW 494
               +   V +    P  +   GE+ V G  L  GY   P LT E  +         +  
Sbjct: 388 PLAGKRAYVLDDDLKPAANGALGELYVAGAGLAHGYVSRPALTAERFVADPFAGPGGERM 447
Query: 495 FHTGDIGQILPNGVVKIIDRK 515
           + TGD+ +   +GV++ + R 
Sbjct: 448 YRTGDLARRRADGVLEYVGRA 468

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	660
3r44_A	517	Fatty acyl COA synthetase FADD13 (fatty-acyl-COA s	7e-70
1t5h_X	504	4-chlorobenzoyl COA ligase; adenylate-forming coen	3e-67
3ipl_A	501	2-succinylbenzoate--COA ligase; structural genomic	7e-66
3ivr_A	509	Putative long-chain-fatty-acid COA ligase; structu	7e-65
4fuq_A	503	Malonyl COA synthetase; ANL superfamily, methylma	5e-64
3g7s_A	549	Long-chain-fatty-acid--COA ligase (FADD-1); protei	2e-61
2d1s_A	548	Luciferase, luciferin 4-monooxygenase; alpha/beta,	1e-60
3nyq_A	505	Malonyl-COA ligase; A/B topology ababa sandwich be	4e-59
3rix_A	550	Luciferase, luciferin 4-monooxygenase; oxidoreduct	5e-59
2v7b_A	529	Benzoate-coenzyme A ligase; benzoate oxidation, be	9e-58
3rg2_A	617	Enterobactin synthase component E (ENTE), 2,3-DIH	1e-57
3ni2_A	536	4-coumarate:COA ligase; 4CL, phenylpropanoid biosy	8e-56
3o83_A	544	Peptide arylation enzyme; ligase, adenylation of 2	3e-54
1mdb_A	539	2,3-dihydroxybenzoate-AMP ligase; adenylation doma	3e-52
3tsy_A	979	Fusion protein 4-coumarate--COA ligase 1, resvera	5e-52
1v25_A	541	Long-chain-fatty-acid-COA synthetase; ligase, stru	1e-45
3gqw_A	576	Fatty acid AMP ligase; FAAL, E. coli, ATP-dependen	1e-32
3c5e_A	570	Acyl-coenzyme A synthetase ACSM2A, mitochondrial;	1e-28
3t5a_A	480	Long-chain-fatty-acid--AMP ligase FADD28; acetyl-C	6e-28
3kxw_A	590	Saframycin MX1 synthetase B; fatty acid AMP ligase	2e-27
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	2e-15
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	1e-10
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	3e-09
3hgu_A	369	EHPF; phenazine, antibiotic, biosynthetic protein;	1e-14
3etc_A	580	AMP-binding protein; adenylate-forming acyl-COA sy	1e-14
3etc_A	580	AMP-binding protein; adenylate-forming acyl-COA sy	2e-10
3l8c_A	521	D-alanine--poly(phosphoribitol) ligase subunit 1;	8e-11
2vsq_A	1304	Surfactin synthetase subunit 3; ligase, peptidyl c	2e-09
3ite_A	562	SIDN siderophore synthetase; ligase, non-ribosomal	3e-08
3e7w_A	511	D-alanine--poly(phosphoribitol) ligase subunit 1;	1e-07
4dg8_A	620	PA1221; ANL superfamily, adenylation domain, pepti	2e-07
3fce_A	512	D-alanine--poly(phosphoribitol) ligase subunit 1;	5e-07
1amu_A	563	GRSA, gramicidin synthetase 1; peptide synthetase,	1e-06
1pg4_A	652	Acetyl-COA synthetase; AMP-forming, adenylate-form	3e-04

>3r44_A Fatty acyl COA synthetase FADD13 (fatty-acyl-COA synthetase); ligase; HET: HIS; 1.80A {Mycobacterium tuberculosis} PDB: 3t5c_A 3t5b_A Length = 517

 Score =  235 bits (601), Expect = 7e-70
 Identities = 106/507 (20%), Positives = 169/507 (33%), Gaps = 100/507 (19%)

Query: 38  DSDLNTAWDIFSMSVQKYPGNRMLGWRPFVDGKFGPYVWKTYKEVYEEVLQIVSALRASG 97
           D  +     +        P                     TY ++     +    L A G
Sbjct: 12  DDKMKNIGWMLRQRATVSPR------LQAYVEPSTDVRM-TYAQMNALANRCADVLTALG 64

Query: 98  AEPGCRVGIYGANCPQWVEAMEACNALSLICVPLYDTLGPGAVNFILDHAEIDFVFVQDK 157
              G RV +   N  ++         L  + VP+   L    V+FIL  +    V     
Sbjct: 65  IAKGDRVALLMPNSVEFCCLFYGAAKLGAVAVPINTRLAAPEVSFILSDSGSKVVIYGA- 123

Query: 158 KVKELLSPDCRSAQRLRVMVCFTSLTAEQKEMAVQTGIKPYSWDEFLHLGKVNEMEILPP 217
                          +R                V   I   S  E L     +E   +  
Sbjct: 124 ---PSAP----VIDAIR--------AQADPPGTVTDWIGADSLAERLRSAAADE-PAVEC 167

Query: 218 QPFNICTIMYTSGTSGDPKGVVLTHETIATFVSGVDLFLDQFEDKMTVDDVYLSFLPLAH 277
              +   IMYTSGT+G PKGVV THE++ +  S     +D     +   D  L  LP+ H
Sbjct: 168 GGDDNLFIMYTSGTTGHPKGVVHTHESVHSAASSWASTID-----VRYRDRLLLPLPMFH 222

Query: 278 ILDRVIEEYFFRRGASVGYYHG-DLNALRDDLMELKPTLLAGVPRVFEKIHEGIKKALEE 336
           +       +   RG ++      D   +   ++E +  +   VP +              
Sbjct: 223 VAALTTVIFSAMRGVTLISMPQFDATKVWSLIVEERVCIGGAVPAIL------------- 269

Query: 337 LRPLRRRIFDALYKYKLAWMNMGYKQREASPLADLLAFRKVKARLGGRLRLVISGGAPLS 396
                               N             +    +         R  I+GGAP+ 
Sbjct: 270 --------------------NF------------MRQVPEFAELDAPDFRYFITGGAPMP 297

Query: 397 TEVEEFLRVTCCAFLVQGYGLTETCGPTTVCFPDE-MCMVGTAGPVSVYSELRL-----E 450
             + +          VQGY LTE+CG  T+   ++ +   G+AG  ++++++ +      
Sbjct: 298 EALIKIYAAKNIEV-VQGYALTESCGGGTLLLSEDALRKAGSAGRATMFTDVAVRGDDGV 356

Query: 451 EVPEMGYSPLDDPPCGEVCVRGKTLFSGYYKNPDLTRESIIDGWFHTGDIGQILPNGVVK 510
                          GEV ++   L   Y+  P+ TR++  +GWF TGDIG+I   G + 
Sbjct: 357 IRE---------HGEGEVVIKSDILLKEYWNRPEATRDAFDNGWFRTGDIGEIDDEGYLY 407

Query: 511 IIDRKKNLIKISQGEYVALEYLENVYC 537
           I DR K++I IS G        ENVY 
Sbjct: 408 IKDRLKDMI-ISGG--------ENVYP 425

>1t5h_X 4-chlorobenzoyl COA ligase; adenylate-forming coenzyme A ligase domain alternation confo change; 2.00A {Alcaligenes SP} SCOP: e.23.1.1 PDB: 1t5d_X 3cw9_A* 3cw8_X* 2qvz_X* 2qw0_X* 3dlp_X* 2qvx_X* 2qvy_X* Length = 504

 Score =  227 bits (582), Expect = 3e-67
 Identities = 95/502 (18%), Positives = 147/502 (29%), Gaps = 103/502 (20%)

Query: 46  DIFSMSVQKYPGNRMLGWRPFVDGKFGPYVWKTYKEVYEEVLQIVSALRASGAEPGCRVG 105
           ++   +  + P +  L                T+ E+   V  + + L A G  P  RV 
Sbjct: 6   EMLRRAATRAPDHCAL-----AVP-ARGLRL-THAELRARVEAVAARLHADGLRPQQRVA 58

Query: 106 IYGANCPQWVEAMEACNALSLICVPLYDTLGPGAVNFILDHAEIDFVFVQDKKVKELLSP 165
           +   N    V A+ A + L  +            +N  L  AE+  +             
Sbjct: 59  VVAPNSADVVIAILALHRLGAVPAL---------LNPRLKSAELAELIK----------- 98

Query: 166 DCRSAQRLRVMVCFTSLTAEQKEMAVQTGIKPYSWDEFLHLGKVNEMEILPPQ----PFN 221
                      V               +G +     + +  G+              P  
Sbjct: 99  RGEM----TAAVIAVGRQVADAIFQSGSGARIIFLGDLVRDGEPYSYGPPIEDPQREPAQ 154

Query: 222 ICTIMYTSGTSGDPKGVVLTHETIATFVSGVDLFLDQFEDKMTVDDVYLSFLPLAHI--L 279
              I YTSGT+G PK  ++      + V  +     Q   +    +V L  +PL H+   
Sbjct: 155 PAFIFYTSGTTGLPKAAIIPQRAAESRVLFM---STQVGLRHGRHNVVLGLMPLYHVVGF 211

Query: 280 DRVIEEYFFRRGASVGYYHGDLNALRDDLMELKPTLLAGVPRVFEKIHEGIKKALEELRP 339
             V+       G  V             + + + T L   P                   
Sbjct: 212 FAVLVAALALDGTYVVVEEFRPVDALQLVQQEQVTSLFATPTHL---------------- 255

Query: 340 LRRRIFDALYKYKLAWMNMGYKQREASPLADLLAFRKVKARLGGRLRLVISGGAPLSTEV 399
                                       LA   A      +L   LR V   GA +   V
Sbjct: 256 ---------------DA-----------LAAAAAHAGSSLKL-DSLRHVTFAGATMPDAV 288

Query: 400 -EEFLRVTCCAFLVQGYGLTETCGPTTVCFPDEMCMVGTAGPVSVYSELRLEEVPEMGYS 458
            E   +       V  YG TE      +  P      GT      +SE+R+  V   G  
Sbjct: 289 LETVHQHLPGEK-VNIYGTTEAMNSLYMRQPK----TGTEMAPGFFSEVRI--VRIGGGV 341

Query: 459 PLDDPP--CGEVCVRG-KTLFSGYYKNPDLTRESIIDGWFHTGDIGQILPNGVVKIIDRK 515
                    GE+ V    + F GY   P  T E + DGW+ T D+    P G V+I+ R 
Sbjct: 342 DEIVANGEEGELIVAASDSAFVGYLNQPQATAEKLQDGWYRTSDVAVWTPEGTVRILGRV 401

Query: 516 KNLIKISQGEYVALEYLENVYC 537
            ++I IS G        EN++ 
Sbjct: 402 DDMI-ISGG--------ENIHP 414

>3ipl_A 2-succinylbenzoate--COA ligase; structural genomics, acyl-protein synthetase, PSI-2, protein structure initiative; 2.30A {Staphylococcus aureus subsp} Length = 501

 Score =  223 bits (572), Expect = 7e-66
 Identities = 91/497 (18%), Positives = 161/497 (32%), Gaps = 96/497 (19%)

Query: 46  DIFSMSVQKYPGNRMLGWRPFVDGKFGPYVWKTYKEVYEEVLQIVSALRASGAEPGCRVG 105
                  Q+            +    G   + TY+ +Y E   +   L    A    RVG
Sbjct: 5   FWLYKQAQQNGH------HIAI--TDGQESY-TYQNLYCEASLLAKRL---KAYQQSRVG 52

Query: 106 IYGANCPQWVEAMEACNALSLICVPLYDTLGPGAVNFILDHAEIDFVFVQDKKVKELLSP 165
           +Y  N  Q +  + AC   ++    +   L P  +   +   ++  +F        L   
Sbjct: 53  LYIDNSIQSIILIHACWLANIEIAMINTRLTPNEMTNQMRSIDVQLIFCTL----PLELR 108

Query: 166 DCRSAQRLRVMVCFTSLTAEQKEMAVQTGIKPYSWDEFLHLGKVNEMEILPPQPFNICTI 225
             +      +      +T               S +  +     + +        +I +I
Sbjct: 109 GFQIVSLDDIEFAGRDITTNGLLDNTMGIQYDTSNETVVPKESPSNILNTSFNLDDIASI 168

Query: 226 MYTSGTSGDPKGVVLTHETIATFVSGVDLFLDQFEDKMTVDDVYLSFLPLAHILDRVIEE 285
           M+TSGT+G  K V  T         G    L         D  +LS LP+ HI    +  
Sbjct: 169 MFTSGTTGPQKAVPQTFRNHYASAIGCKESLG-----FDRDTNWLSVLPIYHISGLSVLL 223

Query: 286 YFFRRGASVGYYHG-DLNALRDDLMELKPTLLAGVPRVFEKIHEGIKKALEELRPLRRRI 344
                G +V      +   +   +   + T ++ VP+    +          ++      
Sbjct: 224 RAVIEGFTVRIVDKFNAEQILTMIKNERITHISLVPQTLNWL----------MQQGLHEP 273

Query: 345 FDALYKYKLAWMNMGYKQREASPLADLLAFRKVKARLGGRLRLVISGGAPLSTEV-EEFL 403
           ++                                      L+ ++ GGA LS  + E  L
Sbjct: 274 YN--------------------------------------LQKILLGGAKLSATMIETAL 295

Query: 404 RVTCCAFLVQGYGLTETCGPTTVCFPDE-MCMVGTAGPVSVYSELRL--EEVPEMGYSPL 460
           +      +   +G+TETC       P+       T G  S   ++++             
Sbjct: 296 QYNLP--IYNSFGMTETCSQFLTATPEMLHARPDTVGMPSANVDVKIKNPNKEGH----- 348

Query: 461 DDPPCGEVCVRGKTLFSGYYKNPDLTRESIIDGWFHTGDIGQILPNGVVKIIDRKKNLIK 520
                GE+ ++G  + +GY    D    +  +G+F+TGDI +I   G V I DR+K+LI 
Sbjct: 349 -----GELMIKGANVMNGYLYPTD-LTGTFENGYFNTGDIAEIDHEGYVMIYDRRKDLI- 401

Query: 521 ISQGEYVALEYLENVYC 537
           IS G        EN+Y 
Sbjct: 402 ISGG--------ENIYP 410

>3ivr_A Putative long-chain-fatty-acid COA ligase; structural genomics, PSI-2, protein S initiative, fatty acid synthesis; HET: GOL; 2.00A {Rhodopseudomonas palustris} Length = 509

 Score =  221 bits (566), Expect = 7e-65
 Identities = 93/502 (18%), Positives = 164/502 (32%), Gaps = 109/502 (21%)

Query: 46  DIFSMSVQKYPGNRMLGWRPFVDGKFGPYVWKTYKEVYEEVLQIVSALRASGAEPGCRVG 105
           D++  +   +P       R             T+++      ++ S L   G   G RV 
Sbjct: 10  DVYRRNAALFPD------RTAF--MVDGVRL-THRDYLARAERLASGLLRDGVHTGDRVA 60

Query: 106 IYGANCPQWVEAMEACNALSLICVPLYDTLGPGAVNFILDHAEIDFVFVQDKKVKELLSP 165
           I   NC + +E + A   +  I +P+   L    + F+L       V       +++++ 
Sbjct: 61  ILSQNCSEMIELIGAVALIGAILLPVNYRLNADEIAFVLGDGAPSVVVA-GTDYRDIVAG 119

Query: 166 DCRSAQRLRVMVCFTSLTAEQKEMAVQTGIKPYSWDEFLHLGKVNEMEILPPQPFNICTI 225
              S   ++                   G     +  F  L              +   I
Sbjct: 120 VLPSLGGVKKAYA--------------IGDGSGPFAPFKDLASDTPFSAPEFGAADGFVI 165

Query: 226 MYTSGTSGDPKGVVLTHETIATFVSGVDLFLDQFEDKMTVDDVYLSFLPLAHILDRVIEE 285
           ++T+   G P+G +++   +    S +          +T  DV L  LPL H+    +  
Sbjct: 166 IHTAAVGGRPRGALISQGNLLIAQSSLVDAWR-----LTEADVNLGMLPLFHVTGLGLML 220

Query: 286 YFFRRGASVGYYHG-DLNALRDDLMELKPTLLAGVPRVFEKIHEGIKKALEELRPLRRRI 344
              + G +       D      D+   K T++A    +   I       L++  P     
Sbjct: 221 TLQQAGGASVIAAKFDPAQAARDIEAHKVTVMAEFAPMLGNI-------LDQAAP----- 268

Query: 345 FDALYKYKLAWMNMGYKQREASPLADLLAFRKVKARLGGRLRLVISGGAPLSTEVEEFLR 404
                                   A L             LR V     P +  +E F  
Sbjct: 269 ------------------------AQL-----------ASLRAVTGLDTPET--IERFEA 291

Query: 405 VTCCAFLVQGYGLTETCGPTTVCFPDEMCMVGTAGPVSVYSELRL-----EEVP--EMGY 457
               A     +G +ET G +T     +     +AG    +  + +       +P  E+G 
Sbjct: 292 TCPNATFWATFGQSETSGLSTFAPYRDR--PKSAGRPLFWRTVAVVDAEDRPLPPGEVG- 348

Query: 458 SPLDDPPCGEVCVRGKTLFSGYYKNPDLTRESIIDGWFHTGDIGQILPNGVVKIIDR--K 515
                    E+ +RG T+F GY+ N   T+ +  +GW HTGD+G+   +G +    R  +
Sbjct: 349 ---------EIVLRGPTVFKGYWNNAAATQHAFRNGWHHTGDMGRFDADGYLFYAGRAPE 399

Query: 516 KNLIKISQGEYVALEYLENVYC 537
           K LI  + G        ENVY 
Sbjct: 400 KELI-KTGG--------ENVYP 412

>4fuq_A Malonyl COA synthetase; ANL superfamily, methylma malonate, ligase; HET: MSE; 1.70A {Rhodopseudomonas palustris} PDB: 4fut_A* Length = 503

 Score =  219 bits (560), Expect = 5e-64
 Identities = 110/472 (23%), Positives = 172/472 (36%), Gaps = 104/472 (22%)

Query: 78  TYKEVYEEVLQIVSALRASGAEPGCRVGIYGANCPQWVEAMEACNALSLICVPLYDTLGP 137
           +Y E+     ++ + L A G + G RV        + +    A      + +PL      
Sbjct: 30  SYAELVARAGRVANVLVARGLQVGDRVAAQTEKSVEALVLYLATVRAGGVYLPL------ 83

Query: 138 GAVNFILDHAEIDFVFVQDKKVKELLSPDCRSAQRLRVMVCFTSLTAEQKEMAVQTGIKP 197
              N      E+D+              D       +++VC  S       +A + G   
Sbjct: 84  ---NTAYTLHELDYFIT-----------DAEP----KIVVCDPSKRDGIAAIAAKVGATV 125

Query: 198 Y--------SWDEFLHLGKVNEMEILPPQPFNICTIMYTSGTSGDPKGVVLTHETIATFV 249
                    S  +            +     ++  I+YTSGT+G  KG +L+H+ +A+  
Sbjct: 126 ETLGPDGRGSLTDAAAGAS-EAFATIDRGADDLAAILYTSGTTGRSKGAMLSHDNLASNS 184

Query: 250 SGVDLFLDQFEDKMTVDDVYLSFLPLAHI--LDRVIEEYFFRRGASVGYYHGDLNALRDD 307
             +  +        T DDV +  LP+ H   L        F RG+ +     D + +  D
Sbjct: 185 LTLVDYWR-----FTPDDVLIHALPIYHTHGLFVASNVTLFARGSMIFLPKFDPDKIL-D 238

Query: 308 LMELKPTLLAGVPRVFEKIHEGIKKALEELRPLRRRIFDALYKYKLAWMNMGYKQREASP 367
           LM  + T+L GVP  +                                            
Sbjct: 239 LMA-RATVLMGVPTFY-------------------------------------------- 253

Query: 368 LADLLAFRKVKARLGGRLRLVISGGAPLSTEV-EEFLRVTCCAFLVQGYGLTETCGPTTV 426
              LL   ++     G +RL ISG APL  +   E+   T  A L + YG+TET    T 
Sbjct: 254 -TRLLQSPRLTKETTGHMRLFISGSAPLLADTHREWSAKTGHAVL-ERYGMTETN-MNTS 310

Query: 427 CFPDEMCMVGTAGPVSVYSELRLEEV-PEMGYSPLDDPPCGEVCVRGKTLFSGYYKNPDL 485
              D   + G  GP       R+    PE G   L     G + V+G  +F GY++ P+ 
Sbjct: 311 NPYDGDRVPGAVGPALPGVSARV--TDPETG-KELPRGDIGMIEVKGPNVFKGYWRMPEK 367

Query: 486 TRESII-DGWFHTGDIGQILPNGVVKIIDRKKNLIKISQGEYVALEYLENVY 536
           T+     DG+F TGD+G+I   G V I+ R K+L+ I+ G         NVY
Sbjct: 368 TKSEFRDDGFFITGDLGKIDERGYVHILGRGKDLV-ITGG--------FNVY 410

>3g7s_A Long-chain-fatty-acid--COA ligase (FADD-1); protein structure initiative, PSI-II, NYSGXRC, 11193J, structural genomics; 2.15A {Archaeoglobus fulgidus dsm 4304} Length = 549

 Score =  213 bits (545), Expect = 2e-61
 Identities = 94/518 (18%), Positives = 173/518 (33%), Gaps = 110/518 (21%)

Query: 33  GFPSVDSDLNTAWDIFSMSVQKYPGNRMLGWRP-FVDGKFGPYVWK----TYKEVYEEVL 87
           GFPS+     +  D    + +K+        +   +  +            + E+ E   
Sbjct: 10  GFPSLYYPKISLADRIDAAAEKFGE------KTAIISAEPKFPSEFPESMNFLEICEVTK 63

Query: 88  QIVSALRASGAEPGCRVGIYGANCPQWVEAMEACNALSLICVPLYDTLGPGAVNFILDHA 147
           ++ S +   G   G  VG+   N   +V  + A   ++   VP         +N +    
Sbjct: 64  KLASGISRKGVRKGEHVGVCIPNSIDYVMTIYALWRVAATPVP---------INPMYKSF 114

Query: 148 EIDFVFVQDKKVKELLSPDCRSAQRLRVMVCFTSLTAEQKEMAVQTGIK--------PYS 199
           E++ +             D  +      +V  + L    K +  +TG++          S
Sbjct: 115 ELEHILN-----------DSEA----TTLVVHSMLYENFKPVLEKTGVERVFVVGGEVNS 159

Query: 200 WDEFLHLGKVNEMEILPPQPFNICTIMYTSGTSGDPKGVVLTHETIATFVSGVDLFLDQF 259
             E +  G  +   +      ++  I YT GT+G PKGV+LTH  +A     + +     
Sbjct: 160 LSEVMDSGSEDFENVKVNPEEDVALIPYTGGTTGMPKGVMLTHFNLAANALQLAVATG-- 217

Query: 260 EDKMTVDDVYLSFLPLAHILDRVIEEYFFRRGAS-VGYYHGDLNALRDDLMELKPTLLAG 318
              ++  D  +  +P+ H  +  +       G   V     +   L +++ + K T    
Sbjct: 218 ---LSHMDTIVGCMPMFHSAEFGLVNLMVTVGNEYVVMGMFNQEMLAENIEKYKGTFSWA 274

Query: 319 VPRVFEKIHEGIKKALEELRPLRRRIFDALYKYKLAWMNMGYKQREASPLADLLAFRKVK 378
           VP                  P      + L                         +    
Sbjct: 275 VP------------------P----ALNVLVNTL-------------ESSNKTYDWS--- 296

Query: 379 ARLGGRLRLVISGGAPLSTEVEE-FLRVTCC------AFLVQGYGLTETCGPTTVCFPDE 431
                 L++  +G  P++  + E  L++             Q +G+TE C   T   P  
Sbjct: 297 -----YLKVFATGAWPVAPALVEKLLKLAAEKCNNPRLRHNQIWGMTEACPMVTTNPPLR 351

Query: 432 MCMVGTAGPVSVYSELRLEEV-PEMGYS-PLDDPPCGEVCVRGKTLFSGYYKNPDLTRES 489
           +    T G      EL++  +  E G    + +   GE+ +RG  +F GY+K     +E 
Sbjct: 352 LDKSTTQGVPMSDIELKV--ISLEDGRELGVGES--GEIVIRGPNIFKGYWKREKENQEC 407

Query: 490 II-----DGWFHTGDIGQILPNGVVKIIDRKKNLIKIS 522
                    +F TGD+G I   G +   DR K +IK  
Sbjct: 408 WWYDEKGRKFFRTGDVGFIDEEGFLHFQDRVKEVIKYK 445

>2d1s_A Luciferase, luciferin 4-monooxygenase; alpha/beta, beta barrel, alpha+beta, riken structural genomics/proteomics initiative, RSGI; HET: SLU; 1.30A {Luciola cruciata} PDB: 2d1q_A* 2d1r_A* 2d1t_A* Length = 548

 Score =  211 bits (539), Expect = 1e-60
 Identities = 113/502 (22%), Positives = 179/502 (35%), Gaps = 86/502 (17%)

Query: 34  FPSVDSDLNTAWDIFSMSVQKYPGNRMLGWRPFVDGKFGPYVWKTYKEVYEEVLQIVSAL 93
            P    +  +A       +++Y     +    F +   G     +Y E  E+   +  AL
Sbjct: 15  KPFYPIEEGSAGTQLRKYMERYAKLGAI---AFTNAVTGVDY--SYAEYLEKSCCLGKAL 69

Query: 94  RASGAEPGCRVGIYGANCPQWVEAMEACNALSLICVPLYDTLGPGAVNFILDHAEIDFVF 153
           +  G     R+ +   NC ++   + A   + +   P  +      +   L  ++   VF
Sbjct: 70  QNYGLVVDGRIALCSENCEEFFIPVIAGLFIGVGVAPTNEIYTLRELVHSLGISKPTIVF 129

Query: 154 VQD---KKVKELLSPDCRSAQRLRVMVCFTSLTAEQKEMAVQTGIKPYSWDEFLHLGKVN 210
                  KV  +     ++   ++ +V   S    +              D F+      
Sbjct: 130 SSKKGLDKVITV----QKTVTTIKTIVILDSKVDYRG---------YQCLDTFIKRNTPP 176

Query: 211 EMEI--LPPQPFN----ICTIMYTSGTSGDPKGVVLTHETIATFVSGVDLFLDQFEDKMT 264
             +         +    +  IM +SG++G PKGV LTHE I T  S     +  + ++++
Sbjct: 177 GFQASSFKTVEVDRKEQVALIMNSSGSTGLPKGVQLTHENIVTRFSHARDPI--YGNQVS 234

Query: 265 VDDVYLSFLPLAHILDRVIEEYFFRRGASVGYYHG-DLNALRDDLMELKPTLLAGVPRVF 323
                L+ +P  H         +   G  V      D       L + K T +  VP   
Sbjct: 235 PGTAVLTVVPFHHGFGMFTTLGYLICGFRVVMLTKFDEETFLKTLQDYKCTSVILVP--- 291

Query: 324 EKIHEGIKKALEELRPLRRRIFDALYKYKLAWMNMGYKQREASPLADLLAFRKVKARLGG 383
                               +F  L K +L        +       DL            
Sbjct: 292 ---------------T----LFAILNKSELL------NKY------DL-----------S 309

Query: 384 RLRLVISGGAPLSTEV-EEFLRVTCCAFLVQGYGLTETCGPTTVCFPDEMCMVGTAGPVS 442
            L  + SGGAPLS EV E   R      + QGYGLTET     +  P+     G +G V 
Sbjct: 310 NLVEIASGGAPLSKEVGEAVARRFNLPGVRQGYGLTETT-SAIIITPEGDDKPGASGKVV 368

Query: 443 VYSELRLEEV-PEMGYSPLDDPP--CGEVCVRGKTLFSGYYKNPDLTRESII-DGWFHTG 498
              + ++  +  +     L   P   GEVCV+G  L  GY  NP+ T+E I  +GW HTG
Sbjct: 369 PLFKAKV--IDLDTK-KSL--GPNRRGEVCVKGPMLMKGYVNNPEATKELIDEEGWLHTG 423

Query: 499 DIGQILPNGVVKIIDRKKNLIK 520
           DIG         I+DR K+LIK
Sbjct: 424 DIGYYDEEKHFFIVDRLKSLIK 445

>3nyq_A Malonyl-COA ligase; A/B topology ababa sandwich beta-barrel adenylate-forming EN fold; HET: MCA AMP; 1.43A {Streptomyces coelicolor} PDB: 3nyr_A* Length = 505

 Score =  205 bits (525), Expect = 4e-59
 Identities = 100/465 (21%), Positives = 147/465 (31%), Gaps = 107/465 (23%)

Query: 83  YEEVLQIVSALRASGAEPGCRVGIYGANCPQWVEAMEACNALSLICVPLYDTLGPGAVNF 142
           Y E+     A  A       RV ++     +   A+ A     +  VPL    G   +  
Sbjct: 51  YAELAAAAGAT-AGRIGGAGRVAVWATPAMETGVAVVAALLAGVAAVPLNPKSGDKELAH 109

Query: 143 ILDHAEIDFVFVQDKKVKELLSPDCRSAQRLRVMVCFTSLTAEQKEMAVQTGIKPYSWDE 202
           IL  +    V            PD      L  +         +  +             
Sbjct: 110 ILSDSAPSLVLA---------PPDAELPPALGALERVDVDVRARGAVPED---------- 150

Query: 203 FLHLGKVNEMEILPPQPFNICTIMYTSGTSGDPKGVVLTHETIATFVSGVDLFLDQFEDK 262
                             +   ++YTSGT+G PKG V+    +AT +  +          
Sbjct: 151 -------------GADDGDPALVVYTSGTTGPPKGAVIPRRALATTLDALADAWQ----- 192

Query: 263 MTVDDVYLSFLPLAHI--LDRVIEEYFFRRGASVGYYHGDLNALRDDLMELKPTLLAGVP 320
            T +DV +  LPL H+  L   I     R G+                +    T+L GVP
Sbjct: 193 WTGEDVLVQGLPLFHVHGLVLGILGPLRRGGSVRHLGRFSTEGAAR-ELNDGATMLFGVP 251

Query: 321 RVFEKIHEGIKKALEELRPLRRRIFDALYKYKLAWMNMGYKQREASPLADLLAFRKVKAR 380
            ++ +                                          +A+ L      A+
Sbjct: 252 TMYHR------------------------------------------IAETLPADPELAK 269

Query: 381 LGGRLRLVISGGAPLSTEV-EEFLRVTCCAFLVQGYGLTETCGPTTVCFPDEMCMVGTAG 439
                RL++SG A L     E     T    + + YG+TET    T    D     GT G
Sbjct: 270 ALAGARLLVSGSAALPVHDHERIAAATGRRVI-ERYGMTETL-MNTSVRADGEPRAGTVG 327

Query: 440 PVSVYSELRL-----EEVPEMGYSPLDDPPCGEVCVRGKTLFSGYYKNPDLTRESII-DG 493
                 ELRL       +       LD    GE+ VRG  LF+ Y   PD T  +   DG
Sbjct: 328 VPLPGVELRLVEEDGTPIA-----ALDGESVGEIQVRGPNLFTEYLNRPDATAAAFTEDG 382

Query: 494 WFHTGDIGQILPNGVVKIIDRK-KNLIKISQGEYVALEYLENVYC 537
           +F TGD+    P+G V+I+ RK  +LI  S G          +  
Sbjct: 383 FFRTGDMAVRDPDGYVRIVGRKATDLI-KSGG--------YKIGA 418

>3rix_A Luciferase, luciferin 4-monooxygenase; oxidoreductase, photoprotein, luminescence, aspulvinone, natural product extracts; HET: 923; 1.70A {Photinus pyralis} PDB: 1ba3_A 1lci_A* 3ies_A* 3iep_A* 3ier_A* 3qya_A Length = 550

 Score =  207 bits (528), Expect = 5e-59
 Identities = 116/502 (23%), Positives = 181/502 (36%), Gaps = 85/502 (16%)

Query: 34  FPSVDSDLNTAWDIFSMSVQKYPGNRMLGWRPFVDGKFGPYVWKTYKEVYEEVLQIVSAL 93
            P    +  TA +    ++++Y      G   F D      +  TY E +E  +++  A+
Sbjct: 12  APFYPLEDGTAGEQLHKAMKRYALVP--GTIAFTDAHIEVNI--TYAEYFEMSVRLAEAM 67

Query: 94  RASGAEPGCRVGIYGANCPQWVEAMEACNALSLICVPLYDTLGPGAVNFILDHAEIDFVF 153
           +  G     R+ +   N  Q+   +     + +   P  D      +   ++ ++   VF
Sbjct: 68  KRYGLNTNHRIVVCSENSLQFFMPVLGALFIGVAVAPANDIYNERELLNSMNISQPTVVF 127

Query: 154 VQD---KKVKELLSPDCRSAQRLRVMVCFTSLTAEQKEMAVQTGIKPYSWDEFL--HLGK 208
           V     +K+  +     +    ++ ++   S T  Q            S   F+  HL  
Sbjct: 128 VSKKGLQKILNVQ----KKLPIIQKIIIMDSKTDYQG---------FQSMYTFVTSHLPP 174

Query: 209 VNEMEILPPQPFN----ICTIMYTSGTSGDPKGVVLTHETIATFVSGVDLFLDQFEDKMT 264
                   P+ F+    I  IM +SG++G PKGV L H T     S     +  F +++ 
Sbjct: 175 GFNEYDFVPESFDRDKTIALIMNSSGSTGLPKGVALPHRTACVRFSHARDPI--FGNQII 232

Query: 265 VDDVYLSFLPLAHILDRVIEEYFFRRGASVGYYHG-DLNALRDDLMELKPTLLAGVPRVF 323
            D   LS +P  H         +   G  V   +  +       L + K      VP   
Sbjct: 233 PDTAILSVVPFHHGFGMFTTLGYLICGFRVVLMYRFEEELFLRSLQDYKIQSALLVP--- 289

Query: 324 EKIHEGIKKALEELRPLRRRIFDALYKYKLAWMNMGYKQREASPLADLLAFRKVKARLGG 383
                               +F    K  L        +       DL            
Sbjct: 290 ---------------T----LFSFFAKSTLI------DKY------DL-----------S 307

Query: 384 RLRLVISGGAPLSTEV-EEFLRVTCCAFLVQGYGLTETCGPTTVCFPDEMCMVGTAGPVS 442
            L  + SGGAPLS EV E   +      + QGYGLTET     +  P+     G  G V 
Sbjct: 308 NLHEIASGGAPLSKEVGEAVAKRFHLPGIRQGYGLTETT-SAILITPEGDDKPGAVGKVV 366

Query: 443 VYSELRLEEV-PEMGYSPLDDPP--CGEVCVRGKTLFSGYYKNPDLTRESII-DGWFHTG 498
            + E ++  V  + G   L       GE+CVRG  + SGY  NP+ T   I  DGW H+G
Sbjct: 367 PFFEAKV--VDLDTG-KTL--GVNQRGELCVRGPMIMSGYVNNPEATNALIDKDGWLHSG 421

Query: 499 DIGQILPNGVVKIIDRKKNLIK 520
           DI     +    I+DR K+LIK
Sbjct: 422 DIAYWDEDEHFFIVDRLKSLIK 443

>2v7b_A Benzoate-coenzyme A ligase; benzoate oxidation, benzoate COA ligase; 1.84A {Burkholderia xenovorans} Length = 529

 Score =  202 bits (517), Expect = 9e-58
 Identities = 96/463 (20%), Positives = 161/463 (34%), Gaps = 84/463 (18%)

Query: 78  TYKEVYEEVLQIVSALRASGAEPGCRVGIYGANCPQWVEAMEACNALSLICVPLYDTLGP 137
           TY E+ E   +  SALR  G  P  R+ +   +      A        ++ V     L P
Sbjct: 50  TYGELEERARRFASALRTLGVHPEERILLVMLDTVALPVAFLGALYAGVVPVVANTLLTP 109

Query: 138 GAVNFILDHAEIDFVFVQDKKVKELLSPDCRSAQRLRVMVCFTSLTAEQKEMAVQTGIKP 197
               ++L H+    V      + + ++    SA+     +  +     +  +A       
Sbjct: 110 ADYVYMLTHSHARAVIA-SGALVQNVTQALESAEHDGCQLIVSQPRESEPRLAP------ 162

Query: 198 YSWDEFLHLGKVNEMEILPPQPFNICTIMYTSGTSGDPKGVVLTHETIATFVSGVDLFLD 257
             ++E +        +       +I   +Y+SG++G PKG V TH   A      +L+  
Sbjct: 163 -LFEELID-AAAPAAKAAATGCDDIAFWLYSSGSTGKPKGTVHTH---ANLYWTAELYAK 217

Query: 258 QFEDKMTVDDVYLSFLPLAHILDRVIEEYF-FRRGASVGYYHG--DLNALRDDLMELKPT 314
                +  +DV  S   L           F    GA+          +A+   L+E +PT
Sbjct: 218 PILG-IAENDVVFSAAKLFFAYGLGNGLTFPLSVGATAILMAERPTADAIFARLVEHRPT 276

Query: 315 LLAGVPRVFEKIHEGIKKALEELRPLRRRIFDALYKYKLAWMNMGYKQREASPLADLLAF 374
           +  GVP                           LY                     +L  
Sbjct: 277 VFYGVP--------------------------TLYAN-------------------MLVS 291

Query: 375 RKVKARLGGRLRLVISGGAPLSTEV-EEFLRVTCCAFLVQGYGLTETCGPTTVCFPDEMC 433
             + AR    +R+  S G  L  E+ E F     C  ++ G G TE      +       
Sbjct: 292 PNLPARADVAIRICTSAGEALPREIGERFTAHFGCE-ILDGIGSTEM-LHIFLSNRAGAV 349

Query: 434 MVGTAG-PVSVYSELRL-----EEVP--EMGYSPLDDPPCGEVCVRGKTLFSGYYKNPDL 485
             GT G PV  Y E+ L       VP  E+G          ++ ++G +    Y+ N + 
Sbjct: 350 EYGTTGRPVPGY-EIELRDEAGHAVPDGEVG----------DLYIKGPSAAVMYWNNREK 398

Query: 486 TRESIIDGWFHTGDIGQILPNGVVKIIDRKKNLIKISQGEYVA 528
           +R + +  W  +GD    LPNG      R  +++K+S G+YV+
Sbjct: 399 SRATFLGEWIRSGDKYCRLPNGCYVYAGRSDDMLKVS-GQYVS 440

>3rg2_A Enterobactin synthase component E (ENTE), 2,3-DIH dihydroxybenzoate synthetase, isochroismatase...; adenylate-forming enzymes, ANL superfamily; HET: SVS PNS; 3.10A {Escherichia coli} Length = 617

 Score =  204 bits (521), Expect = 1e-57
 Identities = 89/517 (17%), Positives = 162/517 (31%), Gaps = 128/517 (24%)

Query: 78  TYKEVYEEVLQIVSALRASGAEPGCRVGIYGANCPQWVEAMEACNALSLICVPLYDTLGP 137
           +Y+E+ +    +  +LR  G +PG    +   N  +      A   L +  V        
Sbjct: 52  SYRELNQAADNLACSLRRQGIKPGETALVQLGNVAELYITFFALLKLGVAPVL------- 104

Query: 138 GAVNFILDHAEIDFVFVQDKKVKELLSPDCRSAQRLRVMVCFTSLTAEQ---KEMAVQTG 194
               F    +E++  +    +   L++    +       +   +   E    + + +   
Sbjct: 105 --ALFSHQRSELNA-YASQIEPALLIADRQHALFSGDDFL--NTFVTEHSSIRVVQLLND 159

Query: 195 IKPYSWDEFLHLGKVNEMEILPPQPFNICTIMYTSGTSGDPKGVVLTHETIA--TFVSGV 252
              ++  + ++     +    P     +     + GT+G PK +  TH         S  
Sbjct: 160 SGEHNLQDAINHP-AEDFTATPSPADEVAYFQLSGGTTGTPKLIPRTHNDYYYSVRRSVE 218

Query: 253 DLFLDQFEDKMTVDDVYLSFLPLAHILDRVIEEYF----------FRRGASVGYYHGDLN 302
                    + T    YL  +P AH         +          F  G +V     D +
Sbjct: 219 IC-------QFTQQTRYLCAIPAAHN--------YAMSSPGSLGVFLAGGTV-VLAADPS 262

Query: 303 ALRDDLMEL----KPTLLAGVPRVFEKIHEGIKKALEELRPLRRRIFDALYKYKLAWMNM 358
           A       L    +  + A VP                                  W+  
Sbjct: 263 A--TLCFPLIEKHQVNVTALVP--------------------------PAV---SLWLQA 291

Query: 359 GYKQREASPLADLLAFRKVKARLGGRLRLVISGGAPLSTEV-EEFLRVTCCAFLVQGYGL 417
             +    + LA               L+L+  GGA LS  +         C  L Q +G+
Sbjct: 292 LIEGESRAQLA--------------SLKLLQVGGARLSATLAARIPAEIGCQ-LQQVFGM 336

Query: 418 TETCGPTTVCFPDEMCMVGTAG-PVSVYSELRL-----EEVP--EMGYSPLDDPPCGEVC 469
            E     T        ++ T G P+    E+ +       +P  E+G           + 
Sbjct: 337 AEGLVNYTRLDDSAEKIIHTQGYPMCPDDEVWVADAEGNPLPQGEVG----------RLM 386

Query: 470 VRGKTLFSGYYKNPDLTRESII-DGWFHTGDIGQILPNGVVKIIDRKKNLIKISQGEYVA 528
            RG   F GYYK+P     +   +G++ +GD+  I P G + +  R+K+ I    GE +A
Sbjct: 387 TRGPYTFRGYYKSPQHNASAFDANGFYCSGDLISIDPEGYITVQGREKDQI-NRGGEKIA 445

Query: 529 LEYLENVYCVAPIIEDIWVYGDSLKSMLVAVV-VPCE 564
            E +EN+    P +               A+V +  E
Sbjct: 446 AEEIENLLLRHPAVIY------------AALVSMEDE 470

>3ni2_A 4-coumarate:COA ligase; 4CL, phenylpropanoid biosynthesis; HET: AYL EPE; 1.90A {Populus tomentosa} PDB: 3a9v_A* 3a9u_A* Length = 536

 Score =  197 bits (504), Expect = 8e-56
 Identities = 113/501 (22%), Positives = 191/501 (38%), Gaps = 89/501 (17%)

Query: 34  FPSVD--SDLNTAWDIFSMSVQKYPGNRMLGWRP-FVDGKFGPYVWKTYKEVYEEVLQIV 90
            P +    +L         ++  +        +P  ++G  G     TY +V     ++ 
Sbjct: 13  LPDIYIPKNLPL-HSYVLENLSNHSS------KPCLINGANGDVY--TYADVELTARRVA 63

Query: 91  SALRASGAEPGCRVGIYGANCPQWVEAMEACNALSLICVPLYDTLGPGAVNFILDHAEID 150
           S L   G + G  + ++  + P++V A    +    I         P  +      +   
Sbjct: 64  SGLNKIGIQQGDVIMLFLPSSPEFVLAFLGASHRGAIITAANPFSTPAELAKHAKASRAK 123

Query: 151 FVFVQDKKVKELLSPDCRSAQRLRVMVCFTSLTAEQKEMAVQTGIKPYSWDEFLHLGKVN 210
            +  Q    +++   D      ++V +C  S                  + E     + N
Sbjct: 124 LLITQACYYEKVK--DFARESDVKV-MCVDSAPDGCL-----------HFSELTQADE-N 168

Query: 211 EMEILPPQPFNICTIMYTSGTSGDPKGVVLTHETIATFVSGVDLFLDQFEDKMTVDDVYL 270
           E   +   P ++  + Y+SGT+G PKGV+LTH+ + T V+      +        +DV L
Sbjct: 169 EAPQVDISPDDVVALPYSSGTTGLPKGVMLTHKGLITSVAQQVDGDNP-NLYFHSEDVIL 227

Query: 271 SFLPLAHI--LDRVIEEYFFRRGASVGYYHGDLNALRDDLMELKPTLLAGVPRVFEKIHE 328
             LP+ HI  L+ ++          +     ++ +L   + + K ++   VP        
Sbjct: 228 CVLPMFHIYALNSIMLCGLRVGAPILIMPKFEIGSLLGLIEKYKVSIAPVVP-------- 279

Query: 329 GIKKALEELRPLRRRIFDALYKYKLAWMNMGYKQREASPLADLLAFRKVKARLGGRLRLV 388
                     P    +  ++ K               SP  D       K  L   LR++
Sbjct: 280 ----------P----VMMSIAK---------------SPDLD-------KHDLS-SLRMI 302

Query: 389 ISGGAPLSTEV-EEFLRVTCCAFLVQGYGLTETCGPTTVCF----PDEMCMVGTAGPVSV 443
            SGGAPL  E+ +        A L QGYG+TE      +C            G  G V  
Sbjct: 303 KSGGAPLGKELEDTVRAKFPQARLGQGYGMTEAGPVLAMCLAFAKEPFDIKPGACGTVVR 362

Query: 444 YSELRLEEV-PEMGYSPLDDPP--CGEVCVRGKTLFSGYYKNPDLTRESII-DGWFHTGD 499
            +E+++  V PE G + L  P    GE+C+RG  +  GY  +P+ T  +I  +GW HTGD
Sbjct: 363 NAEMKI--VDPETG-ASL--PRNQPGEICIRGDQIMKGYLNDPEATSRTIDKEGWLHTGD 417

Query: 500 IGQILPNGVVKIIDRKKNLIK 520
           IG I  +  + I+DR K LIK
Sbjct: 418 IGYIDDDDELFIVDRLKELIK 438

>3o83_A Peptide arylation enzyme; ligase, adenylation of 2,3-dihydroxybenzoate and transfer to pantetheine cofactor of BASF; HET: IXN; 1.90A {Acinetobacter baumannii} PDB: 3o82_A* 3o84_A* Length = 544

 Score =  193 bits (493), Expect = 3e-54
 Identities = 80/552 (14%), Positives = 164/552 (29%), Gaps = 137/552 (24%)

Query: 43  TAWDIFSMSVQKYPGNRMLGWRPFVDGKFGPYVWKTYKEVYEEVLQIVSALRASGAEPGC 102
               I ++ VQ +P          +    G     +Y E+      + + L   G   G 
Sbjct: 31  PLTRILTVGVQSHPH------SLAI--ICGERQL-SYIELDRLSTNLATRLAEKGLGKGD 81

Query: 103 RVGIYGANCPQWVEAMEACNALSLICVPLYDTLGPGAVNFILDHAEIDFVFVQDKKVKEL 162
              +   N  ++     A     ++ +            +     E++  F++  + K L
Sbjct: 82  TALVQLPNVAEFYIVFFALLKAGVVVLN---------ALYSHRQYELNA-FIKQIQPKLL 131

Query: 163 LSPDCRSAQRLRVMV--CFTSLTAEQKEMAVQTGIKPYSWDEFLHLGKVNEMEILPPQPF 220
           +             +        + +  + +      +   +++       ++       
Sbjct: 132 IGSRQHEVFSNNQFIDSLHDVNLSPEIILMLNHQATDFGLLDWIETPAETFVDFSSTPAD 191

Query: 221 NICTIMYTSGTSGDPKGVVLTHETIA--TFVSGVDLFLDQFEDKMTVDDVYLSFLPLAHI 278
            +     + G++G PK +  TH         S            +  +   L  LP  H 
Sbjct: 192 EVAFFQLSGGSTGTPKLIPRTHNDYDYSVRASAEIC-------GLNSNTRLLCALPAPHN 244

Query: 279 LDRVIEEYF----------FRRGASVGYYHGDLNALRDDLMEL----KPTLLAGVPRVFE 324
                   F             G  V     +      +   +    +  + + VP    
Sbjct: 245 --------FMLSSPGALGVLHAGGCV-VMAPNPEP--LNCFSIIQRHQVNMASLVPSAV- 292

Query: 325 KIHEGIKKALEELRPLRRRIFDALYKYKLAWMNMGYKQREASPLADLLAFRKVKARLGGR 384
                                       + W+      +    +  L             
Sbjct: 293 ----------------------------IMWLE--KAAQYKDQIQSL------------- 309

Query: 385 LRLVISGGAPLSTEV-EEFLRVTCCAFLVQGYGLTETCGPTTVCFPDEM-CMVGTAG-PV 441
            +L+  GGA     +  +   V  C  L Q +G+ E          D    +  T G P+
Sbjct: 310 -KLLQVGGASFPESLARQVPEVLNCK-LQQVFGMAEGL-VNYTRLDDSDEQIFTTQGRPI 366

Query: 442 SVYSELRL-----EEVP--EMGYSPLDDPPCGEVCVRGKTLFSGYYKNPDLTRESII-DG 493
           S   E+++      EVP  E+          G +  RG   F GYY++P+   +    D 
Sbjct: 367 SSDDEIKIVDEQYREVPEGEI----------GMLATRGPYTFCGYYQSPEHNSQVFDEDN 416

Query: 494 WFHTGDIGQILPNGVVKIIDRKKNLIKISQGEYVALEYLENVYCVAPIIEDIWVYGDSLK 553
           ++++GD+ Q  P+G ++++ R K+ I    GE +A E +E +  + P +           
Sbjct: 417 YYYSGDLVQRTPDGNLRVVGRIKDQI-NRGGEKIASEEIEKLILLHPEVMH--------- 466

Query: 554 SMLVAVV-VPCE 564
               A+V +  E
Sbjct: 467 ---AALVAIVDE 475

>1mdb_A 2,3-dihydroxybenzoate-AMP ligase; adenylation domain, peptide synthetase, antibiotic biosynthesis, siderophore formation; HET: AMP DBH; 2.15A {Bacillus subtilis} SCOP: e.23.1.1 PDB: 1md9_A* 1mdf_A Length = 539

 Score =  188 bits (479), Expect = 3e-52
 Identities = 110/553 (19%), Positives = 184/553 (33%), Gaps = 143/553 (25%)

Query: 43  TAWDIFSMSVQKYPGNRMLGWRPFVDGKFGPYVWKTYKEVYEEVLQIVSALRASGAEPGC 102
           T  D+      KY        R  +    G   W +Y+E+     ++ +  +  G +   
Sbjct: 26  TFGDLLRDRAAKYGD------RIAI--TCGNTHW-SYRELDTRADRLAAGFQKLGIQQKD 76

Query: 103 RVGIYGANCPQWVEAMEACNALSLICVPLYDTLGPGAVNFILDHAEIDFVFVQDKKVKEL 162
           RV +   N  ++ E + A   L  + V                 +EI + F +  +    
Sbjct: 77  RVVVQLPNIKEFFEVIFALFRLGALPVF---------ALPSHRSSEITY-FCEFAEAAAY 126

Query: 163 LSPDCRSAQRLRVMVCFTSLTAEQKEMAVQTGIKPYSWDEFLHLGKVNE--MEILPPQPF 220
           + PD  S    R +     + ++     ++  I     +EFL L  ++   +++   +  
Sbjct: 127 IIPDAYSGFDYRSLA--RQVQSKLP--TLKNIIVAGEAEEFLPLEDLHTEPVKLPEVKSS 182

Query: 221 NICTIMYTSGTSGDPKGVVLTHETIA--TFVSGVDLFLDQFEDKMTVDDVYLSFLPLAHI 278
           ++  +  + G++G  K +  TH+        S            +    VYL+ LP+AH 
Sbjct: 183 DVAFLQLSGGSTGLSKLIPRTHDDYIYSLKRSVEVC-------WLDHSTVYLAALPMAHN 235

Query: 279 LDRVIEEYFFRRGASVGYYHGDLNALR-------------DDLMEL----KPTLLAGVPR 321
                   +     S     G L  L              DD   L    K T+ A VP 
Sbjct: 236 --------Y---PLSSP---GVLGVLYAGGRVVLSPSPSPDDAFPLIEREKVTITALVPP 281

Query: 322 VFEKIHEGIKKALEELRPLRRRIFDALYKYKLAWMNMGYKQREASPLADLLAFRKVKARL 381
           +                              + WM+          L+ L        ++
Sbjct: 282 LA-----------------------------MVWMD--AASSRRDDLSSL--------QV 302

Query: 382 GGRLRLVISGGAPLSTEV-EEFLRVTCCAFLVQGYGLTETCGPTTVCFPDEM-CMVGTAG 439
                    GGA  S E       V  C  L Q +G+ E          D    +V T G
Sbjct: 303 L------QVGGAKFSAEAARRVKAVFGCT-LQQVFGMAEGL-VNYTRLDDPEEIIVNTQG 354

Query: 440 -PVSVYSELRL-----EEVPEMGYSPLDDPPCGEVCVRGKTLFSGYYKNPDLTRESII-D 492
            P+S Y E R+      +V   G +       G +  RG     GYYK  +    S   D
Sbjct: 355 KPMSPYDESRVWDDHDRDVKP-GET-------GHLLTRGPYTIRGYYKAEEHNAASFTED 406

Query: 493 GWFHTGDIGQILPNGVVKIIDRKKNLIKISQGEYVALEYLENVYCVAPIIEDIWVYGDSL 552
           G++ TGDI ++  +G + +  R K+ I    GE VA E +EN     P + D        
Sbjct: 407 GFYRTGDIVRLTRDGYIVVEGRAKDQI-NRGGEKVAAEEVENHLLAHPAVHD-------- 457

Query: 553 KSMLVAVV-VPCE 564
                A+V +P +
Sbjct: 458 ----AAMVSMPDQ 466

>3tsy_A Fusion protein 4-coumarate--COA ligase 1, resvera synthase; transferase; 3.10A {Arabidospis thaliana} Length = 979

 Score =  192 bits (491), Expect = 5e-52
 Identities = 115/507 (22%), Positives = 189/507 (37%), Gaps = 93/507 (18%)

Query: 34  FPSVD-SDLNTAWDIFSMSVQKYPGNRMLGWRPFVDGKFGPYVWKTYKEVYEEVLQIVSA 92
            P +   +  +  D    ++ ++     L     ++G  G     TY +V+    QI + 
Sbjct: 52  LPDIYIPNHLSLHDYIFQNISEFATKPCL-----INGPTGHVY--TYSDVHVISRQIAAN 104

Query: 93  LRASGAEPGCRVGIYGANCPQWVEAMEACNALSLICVPLYDTLGPGAVNFILDHAEIDFV 152
               G      V +   NCP++V +  A +              P  +      +    +
Sbjct: 105 FHKLGVNQNDVVMLLLPNCPEFVLSFLAASFRGATATAANPFFTPAEIAKQAKASNTKLI 164

Query: 153 FVQD---KKVKELLSPDCRSAQRLRVMVCFTSLTAEQKEMAVQTGIKPYSWDEFLHLGKV 209
             +     K+K L     ++   + ++    + +    E  +        + E       
Sbjct: 165 ITEARYVDKIKPL-----QNDDGVVIVCIDDNESVPIPEGCL-------RFTELTQSTT- 211

Query: 210 NEMEILPPQPFN---ICTIMYTSGTSGDPKGVVLTHETIATFVSGVDLFLDQFEDKMTV- 265
              E++     +   +  + Y+SGT+G PKGV+LTH+ +   V+ V   +D     +   
Sbjct: 212 EASEVIDSVEISPDDVVALPYSSGTTGLPKGVMLTHKGL---VTSVAQQVDGENPNLYFH 268

Query: 266 -DDVYLSFLPLAHI--LDRVIEEYFFRRGASVGYYHGDLNALRDDLMELKPTLLAGVPRV 322
            DDV L  LP+ HI  L+ ++        A +     ++N L + +   K T+   VP  
Sbjct: 269 SDDVILCVLPMFHIYALNSIMLCGLRVGAAILIMPKFEINLLLELIQRCKVTVAPMVP-- 326

Query: 323 FEKIHEGIKKALEELRPLRRRIFDALYKYKLAWMNMGYKQREASPLADLLAFRKVKARLG 382
                           P    I  A+ K               S   +       K  L 
Sbjct: 327 ----------------P----IVLAIAK---------------SSETE-------KYDLS 344

Query: 383 GRLRLVISGGAPLSTEV-EEFLRVTCCAFLVQGYGLTETCGPTTVCF----PDEMCMVGT 437
             +R+V SG APL  E+ +        A L QGYG+TE      +             G 
Sbjct: 345 -SIRVVKSGAAPLGKELEDAVNAKFPNAKLGQGYGMTEAGPVLAMSLGFAKEPFPVKSGA 403

Query: 438 AGPVSVYSELRLEEV-PEMGYSPLDDPP--CGEVCVRGKTLFSGYYKNPDLTRESII-DG 493
            G V   +E+++  V P+ G   L       GE+C+RG  +  GY  NP  T E+I  DG
Sbjct: 404 CGTVVRNAEMKI--VDPDTG-DSL--SRNQPGEICIRGHQIMKGYLNNPAATAETIDKDG 458

Query: 494 WFHTGDIGQILPNGVVKIIDRKKNLIK 520
           W HTGDIG I  +  + I+DR K LIK
Sbjct: 459 WLHTGDIGLIDDDDELFIVDRLKELIK 485

>1v25_A Long-chain-fatty-acid-COA synthetase; ligase, structural genomics, riken structural genomics/proteomics initiative, RSGI; HET: ANP; 2.30A {Thermus thermophilus} SCOP: e.23.1.1 PDB: 1ult_A* 1v26_A* Length = 541

 Score =  169 bits (430), Expect = 1e-45
 Identities = 123/499 (24%), Positives = 181/499 (36%), Gaps = 123/499 (24%)

Query: 72  GPYVWKTYKEVYEEVLQIVSALRASGAEPGCRVGIYGANCPQWVEAMEACNALSLICVPL 131
           G     TY EVY+   +++  LRA G   G RV   G N  + +EA  A   +  +    
Sbjct: 43  GEVHRTTYAEVYQRARRLMGGLRALGVGVGDRVATLGFNHFRHLEAYFAVPGMGAVLHTA 102

Query: 132 YDTLGPGAVNFILDHAEIDFVFVQDKKVKELLSPDCRSAQRLRVMVCFTSLTAEQK---E 188
              L P  + +IL+HAE   +   D  +  L+       + ++  V       E     E
Sbjct: 103 NPRLSPKEIAYILNHAEDKVLLF-DPNLLPLVEAIRGELKTVQHFVVMDEKAPEGYLAYE 161

Query: 189 MAVQTGIKPYSWDEFLHLGKVNEMEILPPQPFNICTIMYTSGTSGDPKGVVLTHETI--- 245
            A+     P    E                    C + YT+GT+G PKGVV +H  +   
Sbjct: 162 EALGEEADPVRVPE-------RAA----------CGMAYTTGTTGLPKGVVYSHRALVLH 204

Query: 246 ATFVSGVDLFLDQFEDKMTVDDVYLSFLPLAHI----------LDRVIEEYFFRRGASVG 295
           +   S VD         ++  DV L  +P+ H+          L           GA   
Sbjct: 205 SLAASLVDGT------ALSEKDVVLPVVPMFHVNAWCLPYAATL----------VGAKQV 248

Query: 296 YYHGDLNALRDDLMEL----KPTLLAGVPRVFEKIHEGIKKALEELRPLRRRIFDALYKY 351
                L+     L+EL      T  AGVP V                             
Sbjct: 249 LPGPRLDP--ASLVELFDGEGVTFTAGVPTV----------------------------- 277

Query: 352 KLAWMNMGYKQREASPLADLLAFRKVKARLGGRLRLVISGGAPLSTEV-EEFLR--VTCC 408
              W+ +                     RL   LR ++ GG+     +   F R  V   
Sbjct: 278 ---WLAL------------ADYLESTGHRLKT-LRRLVVGGSAAPRSLIARFERMGVE-- 319

Query: 409 AFLVQGYGLTETCGPTTVCFP----------DEMCMVGTAGPVSVYSELRLEEVPEMGYS 458
             + QGYGLTET       F           +++ +    G       LR+ +  E    
Sbjct: 320 --VRQGYGLTETSPVVVQNFVKSHLESLSEEEKLTLKAKTGLPIPLVRLRVAD-EEGRPV 376

Query: 459 PLDDPPCGEVCVRGKTLFSGYYKNPDLTRESII-DGWFHTGDIGQILPNGVVKIIDRKKN 517
           P D    GEV ++G  +  GYY N + TR ++  DG+F TGDI      G V+I DR K+
Sbjct: 377 PKDGKALGEVQLKGPWITGGYYGNEEATRSALTPDGFFRTGDIAVWDEEGYVEIKDRLKD 436

Query: 518 LIKISQGEYVA-LEYLENV 535
           LIK S GE+++ ++ LEN 
Sbjct: 437 LIK-SGGEWISSVD-LENA 453

>3c5e_A Acyl-coenzyme A synthetase ACSM2A, mitochondrial; middle-chain acyl-COA synthetase, xenobiotic/medium-chain FA COA ligase; HET: ATP; 1.60A {Homo sapiens} PDB: 2vze_A 3b7w_A* 3day_A* 3eq6_A* 3eyn_A* 3gpc_A* 2wd9_A* Length = 570

 Score =  120 bits (302), Expect = 1e-28
 Identities = 83/442 (18%), Positives = 149/442 (33%), Gaps = 93/442 (21%)

Query: 78  TYKEVYEEVLQIVSALRAS-GAEPGCRVGIYGANCPQWVEAMEACNALSLICVPLYDTLG 136
            ++E+ E   Q  + L  + G + G RV +     P+W   +  C    LI +P    + 
Sbjct: 75  NFRELSENSQQAANVLSGACGLQRGDRVAVVLPRVPEWWLVILGCIRAGLIFMPGTIQMK 134

Query: 137 PGAVNFILDHAEIDFVFVQDKKVKEL--LSPDCRSAQRLRVMVCFTSLTAEQKEMAVQTG 194
              + + L  ++   +   D+ ++E+  ++ +C S   LR+ +  +  + +         
Sbjct: 135 STDILYRLQMSKAKAIVAGDEVIQEVDTVASECPS---LRIKLLVSEKSCD--------- 182

Query: 195 IKPYSWDEFLHL--GKVNEMEILPPQPFNICTIMYTSGTSGDPKGVVLTHETIATFVSGV 252
                W  F  L          +         I +TSGTSG PK    ++ ++       
Sbjct: 183 ----GWLNFKKLLNEASTTHHCVETGSQEASAIYFTSGTSGLPKMAEHSYSSLGLKAKMD 238

Query: 253 DLFLDQFEDKMTVDDVYLSFLPLA---HILDRVIEEYFFRRGASVGYYHG---DLNALRD 306
             +       +   D+  +        +IL  ++E +    GA    +     D   +  
Sbjct: 239 AGWTG-----LQASDIMWTISDTGWILNILCSLMEPWAL--GACTFVHLLPKFDPLVILK 291

Query: 307 DLMELKPTLLAGVPRVFEKIHEGIKKALEELRPLRRRIFDALYKYKLAWMNMGYKQREAS 366
            L       + G P V+              R L +     L  YK              
Sbjct: 292 TLSSYPIKSMMGAPIVY--------------RMLLQ---QDLSSYKF------------- 321

Query: 367 PLADLLAFRKVKARLGGRLRLVISGGAPLSTEV-EEFLRVTCCAFLVQGYGLTETCGPTT 425
                             L+  ++ G  L  E  E +   T    + + YG TET G T 
Sbjct: 322 ----------------PHLQNCVTVGESLLPETLENWRAQTGLD-IRESYGQTET-GLTC 363

Query: 426 VCFPDEMCMVGTAG-PVSVYSELRLEEVPEMGYSPLDDPPCGEVCVRGKT-----LFSGY 479
           +         G  G   S Y    ++ + + G + L     G++ +R K      +FSGY
Sbjct: 364 MVSKTMKIKPGYMGTAASCY---DVQIIDDKG-NVLPPGTEGDIGIRVKPIRPIGIFSGY 419

Query: 480 YKNPDLTRESIIDGWFHTGDIG 501
             NPD T  +I   ++  GD G
Sbjct: 420 VDNPDKTAANIRGDFWLLGDRG 441

>3t5a_A Long-chain-fatty-acid--AMP ligase FADD28; acetyl-COA synthetase like fold, AMP-binding; 2.05A {Mycobacterium tuberculosis} PDB: 3e53_A Length = 480

 Score =  117 bits (294), Expect = 6e-28
 Identities = 85/512 (16%), Positives = 144/512 (28%), Gaps = 139/512 (27%)

Query: 52  VQKYPGNRMLGWRPFVDGKFGPYVWKTYKEVYEEVLQIVSALRASGAEPGCRVGIYGANC 111
            +  P +    +  +     G  +  T+ ++Y   L +   L   G+  G RV I     
Sbjct: 34  ARLQPHDPAFTFMDYEQDWDGVAITLTWSQLYRRTLNVAQELSRCGS-TGDRVVISAPQG 92

Query: 112 PQWVEAMEACNALSLICVPLYDTLGPGAVN---FILDHAEIDFVFVQDKKVKELLSPDCR 168
            ++V A         I VPL    G         +L  +    +      V ++      
Sbjct: 93  LEYVVAFLGALQAGRIAVPLSVPQGGVTDERSDSVLSDSSPVAILTTSSAVDDV------ 146

Query: 169 SAQRLRVMVCFTSLTAEQKEMAVQTGIKPYSW--DEFLHLGKVNEMEILPPQPFNICTIM 226
                             + +A + G  P S    + L L   N       +  +   + 
Sbjct: 147 -----------------VQHVARRPGESPPSIIEVDLLDLDAPNGYTFKEDEYPSTAYLQ 189

Query: 227 YTSGTSGDPKGVVLTHETIATFVSG-VDLFLDQFEDKMTVDDVYLSFLPLAHILDRVIEE 285
           YTSG++  P GVV++H+ +       +  +    +     +   +S+LP  H        
Sbjct: 190 YTSGSTRTPAGVVMSHQNVRVNFEQLMSGYFADTDGIPPPNSALVSWLPFYHD------- 242

Query: 286 YFFRRGASVGYYHGDLNALRDDLMELKPTLLAGVPRVFEKIHEGIKKALEELRP---LRR 342
                   V                  P +L G P V                P   L+R
Sbjct: 243 -----MGLVIGI-------------CAP-ILGGYPAVL-------------TSPVSFLQR 270

Query: 343 --RIFDALYKYK--LAWM-NMGYKQREASPLADLLAFRKVKARLGG----RLRLVISGGA 393
             R    +       +   N  +         +L A R     + G     +  ++SG  
Sbjct: 271 PARWMHLMASDFHAFSAAPNFAF---------ELAARRTTDDDMAGRDLGNILTILSGSE 321

Query: 394 PLSTE-VEEFLRVTCCAF---------LVQGYGLTETC----------GPTTVCFPDEMC 433
            +    ++ F       F         +   Y L E             P TV F  E  
Sbjct: 322 RVQAATIKRFAD----RFARFNLQERVIRPSYWLAEATVYVATSKPGQPPETVDFDTESL 377

Query: 434 MVGTAGPVSVYSELRLEEV------------PEMGYSPLDDPPCGEVCVRGKTLFSGYYK 481
             G A P +      L                +       D   GE+ V G  + +GY++
Sbjct: 378 SAGHAKPCAGGGATSLISYMLPRSPIVRIVDSDTC-IECPDGTVGEIWVHGDNVANGYWQ 436

Query: 482 NPDLTRESII------------DGWFHTGDIG 501
            PD +  +                W  TGD G
Sbjct: 437 KPDESERTFGGKIVTPSPGTPEGPWLRTGDSG 468

>3kxw_A Saframycin MX1 synthetase B; fatty acid AMP ligase, SGX, acyl adenylate, structural genom 2, protein structure initiative; HET: 1ZZ; 1.85A {Legionella pneumophila subsp} PDB: 3lnv_A* Length = 590

 Score =  116 bits (293), Expect = 2e-27
 Identities = 90/496 (18%), Positives = 161/496 (32%), Gaps = 126/496 (25%)

Query: 78  TYKEVYEEVLQIVSALRASGAEPGCRVGIYGANCPQWVEAMEACNALSLICVPLYDTLGP 137
           TY+++ +    I + L+A GA+PG RV +  A     ++A   C     I VP+Y     
Sbjct: 42  TYEQLDQHAKAIAATLQAEGAKPGDRVLLLFAPGLPLIQAFLGCLYAGCIAVPIYPPAQE 101

Query: 138 GA---VNFILDHAEIDFVFVQDKKVKELLSPDCRSAQRLRVMVCFTSLTAEQKEMAVQTG 194
                   I+ +++   V +    +K+  + +  +  +   +     +  E  E+   + 
Sbjct: 102 KLLDKAQRIVTNSKPVIVLMIADHIKKFTADELNTNPKFLKIPA---IALESIELNRSSS 158

Query: 195 IKPYSWDEFLHLGKVNEMEILPPQPFNICTIMYTSGTSGDPKGVVLTHETIATFVSGVDL 254
            +P                    +  +I  + YTSG++  PKGV+++H  +   ++ +  
Sbjct: 159 WQPT-----------------SIKSNDIAFLQYTSGSTMHPKGVMVSHHNLLDNLNKIFT 201

Query: 255 FLDQFEDKMTVDDVYLSFLPLAHILDRVIEEYFFRRGASVGYYHGDLNALRDDLMELKPT 314
                   M  + +  S+LP  H +           G            ++  +M     
Sbjct: 202 SFH-----MNDETIIFSWLPPHHDM-----------GLIGCILTPIYGGIQAIMMS---- 241

Query: 315 LLAGVPRVFEKIHEGIKKALEELRPLRRRIFDALYKYK--LAWM-NMGYKQREASPLADL 371
                P  F +             PL       + KYK  ++   N  Y         D 
Sbjct: 242 -----PFSFLQ------------NPL--SWLKHITKYKATISGSPNFAY---------DY 273

Query: 372 LAFRKVKARLGG----RLRLVISGGAPLSTE-VEEFLRVTCCAFLVQG---------YGL 417
              R  + +  G          +G  P+  E +E F +    AF   G         YGL
Sbjct: 274 CVKRIREEKKEGLDLSSWVTAFNGAEPVREETMEHFYQ----AFKEFGFRKEAFYPCYGL 329

Query: 418 TETC----------GPTTVCFPDEMCMVGTAGPVSVYSELRLEEV-------------PE 454
            E               T+    E             S    + V             P+
Sbjct: 330 AEATLLVTGGTPGSSYKTLTLAKEQFQDHRVHFADDNSPGSYKLVSSGNPIQEVKIIDPD 389

Query: 455 MGYSPLDDPPCGEVCVRGKTLFSGYYKNPDLTRESI---------IDGWFHTGDIGQILP 505
               P D    GE+ V+  ++  GY+  P+ TR +             +  TGD+G  L 
Sbjct: 390 TL-IPCDFDQVGEIWVQSNSVAKGYWNQPEETRHAFAGKIKDDERSAIYLRTGDLG-FLH 447

Query: 506 NGVVKIIDRKKNLIKI 521
              + +  R K+LI I
Sbjct: 448 ENELYVTGRIKDLIII 463

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 79.5 bits (195), Expect = 2e-15
 Identities = 92/586 (15%), Positives = 162/586 (27%), Gaps = 167/586 (28%)

Query: 189 MAVQTGIKPYSWDEFLHLGKVNEMEILPPQPFNICTIMYTSGTSGD-PKGVVLTHE---- 243
           M  +TG   Y + + L    V E   +    F+   +        D PK ++   E    
Sbjct: 7   MDFETGEHQYQYKDILS---VFEDAFV--DNFDCKDVQ-------DMPKSILSKEEIDHI 54

Query: 244 -TIATFVSGVDLFLDQFEDKMTVDDVYLSFLPLAH------ILDRVIEEYFFRRGASVGY 296
                 VSG          K    ++   F+          ++  +  E    R  S+  
Sbjct: 55  IMSKDAVSGTLRLFWTLLSKQE--EMVQKFVEEVLRINYKFLMSPIKTEQ---RQPSMMT 109

Query: 297 --YHGDLNALRDDLMELKPTLLAGVPRVFEKIHEGIKKALEELRP--------------- 339
             Y    + L +D           V R+ +   + +++AL ELRP               
Sbjct: 110 RMYIEQRDRLYNDNQVFAKY---NVSRL-QPYLK-LRQALLELRPAKNVLIDGVLGSGKT 164

Query: 340 ------LRRRIFDALYKYKLAWMNMGYKQREASPLADLLAFRKVKARLGGRLRLVISGGA 393
                            +K+ W+N+       + L  L      +       R   S   
Sbjct: 165 WVALDVCLSYKVQCKMDFKIFWLNLKNCNSPETVLEMLQKLL-YQIDPNWTSRSDHSSNI 223

Query: 394 PLSTE-VEEFLRVTCC------AFLVQGYGLTETCGPTTV-CFPDEMC--MVGT------ 437
            L    ++  LR            LV    L           F +  C  ++ T      
Sbjct: 224 KLRIHSIQAELRRLLKSKPYENCLLV----LLNVQNAKAWNAF-NLSCKILLTTRFKQVT 278

Query: 438 -AGPVSVYSELRLEEVPEMGYSPLDDPPCGEVCVRGKTLFSGY--YKNPDLTRESIIDGW 494
                +  + + L+       +P       E     K+L   Y   +  DL RE +    
Sbjct: 279 DFLSAATTTHISLDHHSM-TLTP------DE----VKSLLLKYLDCRPQDLPREVLTTNP 327

Query: 495 FHTGDIGQILPNGVVKI-------IDRKKNLIKIS---------QGEYVALEYL-ENVYC 537
                I + + +G+           D+   +I+ S         +  +  L     + + 
Sbjct: 328 RRLSIIAESIRDGLATWDNWKHVNCDKLTTIIESSLNVLEPAEYRKMFDRLSVFPPSAHI 387

Query: 538 VAPIIEDIWVYGDSLKSMLVAVVVP----CEEDTKKWAYS-------------------- 573
              ++  IW        M+V   +      E+  K+   S                    
Sbjct: 388 PTILLSLIWFDVIKSDVMVVVNKLHKYSLVEKQPKESTISIPSIYLELKVKLENEYALHR 447

Query: 574 ------NGHAGSFLELCSLVQLQNYILS----ELKNAAERNKLRGFEHIKGVILDPRPFD 623
                 N       +      L  Y  S     LKN     ++  F  +    LD R F 
Sbjct: 448 SIVDHYNIPKTFDSDDLIPPYLDQYFYSHIGHHLKNIEHPERMTLFRMV---FLDFR-F- 502

Query: 624 MERDL------------VTATLKKKRNKLLIY--YQVEIDQLYEKL 655
           +E+ +            +  TL     +L  Y  Y  + D  YE+L
Sbjct: 503 LEQKIRHDSTAWNASGSILNTL----QQLKFYKPYICDNDPKYERL 544

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 64.1 bits (155), Expect = 1e-10
 Identities = 83/559 (14%), Positives = 154/559 (27%), Gaps = 195/559 (34%)

Query: 141 NFILDHAEIDFVFVQD--------KKVKELL-SPDCRSAQRLRVMVCFTSLTAEQKEMAV 191
            F+ +    D   VQD        +++  ++ S D   +  LR+     S   E  +  V
Sbjct: 28  AFVDN---FDCKDVQDMPKSILSKEEIDHIIMSKD-AVSGTLRLFWTLLSKQEEMVQKFV 83

Query: 192 QTGIKP-YSWDEFLHLGKVNEMEILPPQPFNICTIMYTSGTSGDPKGVVLTHETIATFVS 250
           +  ++  Y +     L  ++ ++    QP ++ T MY                       
Sbjct: 84  EEVLRINYKF-----L--MSPIKTEQRQP-SMMTRMYIE--------------------- 114

Query: 251 GVDLFLDQFEDKMTVDDVYLSFLPLAHILDRVIEEYFFRRGASVGYYHGDLNALRDDLME 310
                     D++  D+             +V  +Y   R             LR  L+E
Sbjct: 115 --------QRDRLYNDN-------------QVFAKYNVSRLQPY-------LKLRQALLE 146

Query: 311 LKPTLLAGVPRVFEKIH--EGIKK---ALEELR--PLRRRIFDALYKYKLAWMNMGYKQR 363
           L+P        V   I    G  K   AL+      ++ ++   ++     W+N+     
Sbjct: 147 LRPA-----KNVL--IDGVLGSGKTWVALDVCLSYKVQCKMDFKIF-----WLNLKNCNS 194

Query: 364 EASPLADLLAFRKVKARLGGRLRLVISGGAPLSTE-VEEFLRVTCC------AFLVQGYG 416
             + L  L      +       R   S    L    ++  LR            LV    
Sbjct: 195 PETVLEMLQKLL-YQIDPNWTSRSDHSSNIKLRIHSIQAELRRLLKSKPYENCLLV---- 249

Query: 417 LTETCGPTTV-CFPDEMC--MVGT-------AGPVSVYSELRLEEVPEMGYSPLDDPPCG 466
           L           F +  C  ++ T           +  + + L+       +P       
Sbjct: 250 LLNVQNAKAWNAF-NLSCKILLTTRFKQVTDFLSAATTTHISLDHHSM-TLTP------D 301

Query: 467 EVCVRGKTLFSGY--YKNPDLTRESIIDGWFHTGDIGQILPNGVVKI-------IDRKKN 517
           E     K+L   Y   +  DL RE +         I + + +G+           D+   
Sbjct: 302 E----VKSLLLKYLDCRPQDLPREVLTTNPRRLSIIAESIRDGLATWDNWKHVNCDKLTT 357

Query: 518 LIKISQGEYVALEYLENVYCVAPIIEDIWVYGDSLKSMLVAVVV-PCEEDTKKWAYSNGH 576
           +I+ S      L  LE      P            + M   + V P              
Sbjct: 358 IIESS------LNVLE------P---------AEYRKMFDRLSVFP--PSAH-------- 386

Query: 577 AGSFLELCSLVQLQNYILSELKNAAERNKLRGFEHIKGVILDPRPFDMERDLVTATLKKK 636
                     +     +LS +     ++             D     +   L   +L +K
Sbjct: 387 ----------IPTI--LLSLIWFDVIKS-------------DVM--VVVNKLHKYSLVEK 419

Query: 637 RNKLLIYYQVEIDQLYEKL 655
           + K        I  +Y +L
Sbjct: 420 QPKESTIS---IPSIYLEL 435

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 59.1 bits (142), Expect = 3e-09
 Identities = 50/383 (13%), Positives = 104/383 (27%), Gaps = 135/383 (35%)

Query: 71  FGPYVWKTYKEVY--EEVLQIVSALRASGAEPGCRVGIYGANCPQWVEAMEACNALS-LI 127
           F  + W   K     E VL+++  L             + +N    + +++    L  L+
Sbjct: 182 FKIF-WLNLKNCNSPETVLEMLQKLLYQIDPNWTSRSDHSSNIKLRIHSIQ--AELRRLL 238

Query: 128 CVPLY-DTLGPGAVNFILDHAEIDFVFVQDKKVKELLSPDCRSAQRLRVMVC--FTSLT- 183
               Y + L       +L +       VQ+ K     +  C      ++++   F  +T 
Sbjct: 239 KSKPYENCL------LVLLN-------VQNAKAWNAFNLSC------KILLTTRFKQVTD 279

Query: 184 ----AEQKEMAVQTGIKPYSWDEFLHL-GKVNEMEI--LPPQ-----PF----------- 220
               A    +++       + DE   L  K  +     LP +     P            
Sbjct: 280 FLSAATTTHISLDHHSMTLTPDEVKSLLLKYLDCRPQDLPREVLTTNPRRLSIIAESIRD 339

Query: 221 NICTIMYTSGTSGD----------------------------PKGVVLTHETIATF---- 248
            + T       + D                            P    +    ++      
Sbjct: 340 GLATWDNWKHVNCDKLTTIIESSLNVLEPAEYRKMFDRLSVFPPSAHIPTILLSLIWFDV 399

Query: 249 -VSGVDLFLDQFEDK-----------MTVDDVYLSFLPLA------HILDRVIEEYFFRR 290
             S V + +++               +++  +YL            H    +++ Y   +
Sbjct: 400 IKSDVMVVVNKLHKYSLVEKQPKESTISIPSIYLELKVKLENEYALH--RSIVDHYNIPK 457

Query: 291 GASVGYYHGDLNALRDD----------LMELKPT-LLAGVPRVF-------EKI-HEG-- 329
                +   DL     D          L  ++    +     VF       +KI H+   
Sbjct: 458 ----TFDSDDLIPPYLDQYFYSHIGHHLKNIEHPERMTLFRMVFLDFRFLEQKIRHDSTA 513

Query: 330 ------IKKALEELRPLRRRIFD 346
                 I   L++L+  +  I D
Sbjct: 514 WNASGSILNTLQQLKFYKPYICD 536

>3hgu_A EHPF; phenazine, antibiotic, biosynthetic protein; 1.95A {Pantoea agglomerans} PDB: 3hgv_A 3l2k_A* Length = 369

 Score = 75.1 bits (184), Expect = 1e-14
 Identities = 54/373 (14%), Positives = 102/373 (27%), Gaps = 53/373 (14%)

Query: 150 DFVFVQDKKVKELLSPDCRSAQRLRVMVCFTSLTAEQ--KEMAVQTGIKPY----SWDEF 203
           D+    D  +K     D  +  +  +   F+  T       M  Q    P     + ++ 
Sbjct: 6   DYSLEIDAVMKAAQINDTNNFVQALMRWHFSKETGSPFWLGMREQLNFDPIKDVKTINDL 65

Query: 204 LHLG-KVNEMEILPPQPF--------NICTIMYTSGTSGDPKGVVLTHETIATFVSGVDL 254
                  + +   P            +   +  + GT+G PK VV     I   +S    
Sbjct: 66  RQFSDISHCLRQEPVANLVPQGLPADSHPQVYESGGTTGAPKYVVAYDAWIEALISWRMS 125

Query: 255 FLDQFEDKMTVDDVYLSFLPL-AHILDRVIEEYFFRRGASVGYYHGDLNALRDDLMELKP 313
                          L+ +P   HI+  + +E   R G        D    R     L  
Sbjct: 126 GYQHRP--GRPSGNTLAAIPTGPHIVGAINKERALRLGGMFFSIDID---PRWVKRSLSE 180

Query: 314 TLLAGVPRVFEKIHEGIKKALEELRPLRRRIFDALYKYKLAWMNMGYKQREASP--LADL 371
              A V +    + + ++  L       R +                     +P  L +L
Sbjct: 181 GDTATVRKYTHHLVDQVQNTLMNQDI--RFLV-------------------TTPPVLREL 219

Query: 372 LAFRKVKARLGGRLRLVISGGAPLSTEVEEFLR--VTCCAFLVQGYGLTETCGPTTVCFP 429
           L   +V  ++   L  +  GG  L+ +  +F+   +         YG T   G +     
Sbjct: 220 LKRPEVVLQMKQSLAQITLGGTELNLDEIKFIASEILPDCEFSASYGSTSALGVSRSLLI 279

Query: 430 DEMCMVGTAGPVSVYSELRLEEV-PEMGYSPLDDPPCGEVCVRGKT---LFSGYYKNPDL 485
                       S +    +  V        ++    G V V   +    +    +    
Sbjct: 280 TSESQQVIYDSFSPFITYDV--VDSITA-QTVEYGERGNVIVTHLSPWAFYPRVAERDTA 336

Query: 486 TRESIIDGWFHTG 498
            R   + G+    
Sbjct: 337 IRLPGVSGFAGDR 349

>3etc_A AMP-binding protein; adenylate-forming acyl-COA synthetase ligase, ligase; HET: PGE 1PE EPE; 2.10A {Methanosarcina acetivorans} Length = 580

 Score = 76.1 bits (188), Expect = 1e-14
 Identities = 35/218 (16%), Positives = 70/218 (32%), Gaps = 33/218 (15%)

Query: 37  VDSDLNTAWDIFSMSVQKYPGNRMLGWRPFVDGKFGPYVWKTYKEVYEEVLQIVSALRAS 96
           V  + N A+D+  +  +  P    + W    D      ++ T+K++     +  +     
Sbjct: 51  VPENFNFAYDVVDVYARDSPEKLAMIW---CDDYGNEKIF-TFKDLKYYSDKAANFFVKH 106

Query: 97  GAEPGCRVGIYGANCPQWVEAMEACNALSLICVPLYDTLGPGAVNFILDHAEIDFVFVQD 156
           G   G  V +   +   +   M   + L  I VP    L    + + ++ A +  +    
Sbjct: 107 GIGKGDYVMLTLKSRYDFWYCMLGLHKLGAIAVPATHMLKTRDIVYRIEKAGLKMIVCIA 166

Query: 157 -----KKVKELLSPDCRSAQRLRVMVCFTSLTAEQKEMAVQTGIKPYSWDEFLHLGKVNE 211
                ++V E    +C      +  V                G     W +F    +   
Sbjct: 167 EDDVPEQVDEAH-AECGDIPLKKAKV---------------GGDVLEGWIDFRKELE-ES 209

Query: 212 MEILPPQPFNICT-------IMYTSGTSGDPKGVVLTH 242
             I       + T       + ++SGT+G PK V   +
Sbjct: 210 SPIFERPTGEVSTKNEDICLVYFSSGTAGFPKMVEHDN 247

>3etc_A AMP-binding protein; adenylate-forming acyl-COA synthetase ligase, ligase; HET: PGE 1PE EPE; 2.10A {Methanosarcina acetivorans} Length = 580

 Score = 62.6 bits (153), Expect = 2e-10
 Identities = 38/128 (29%), Positives = 57/128 (44%), Gaps = 19/128 (14%)

Query: 384 RLRLVISGGAPLSTEV-EEFLRVTCCAFLVQGYGLTET---CGPTTVCFPDEMCMVGTAG 439
            L+  +  G PL+ EV   FL  T    L++G+G TET          FP      G+ G
Sbjct: 342 TLKYAVVAGEPLNPEVFNRFLEFTGIK-LMEGFGQTETVVTIAT----FPWMEPKPGSIG 396

Query: 440 -PVSVYSELRLEEVPEMGYSPLDDPPCGEVCVRGKT-----LFSGYYKNPDLTRESIIDG 493
            P   Y   ++E +   G    +    GE+ +         LF  Y K+P+ T E+  DG
Sbjct: 397 KPTPGY---KIELMDRDG-RLCEVGEEGEIVINTMEGKPVGLFVHYGKDPERTEETWHDG 452

Query: 494 WFHTGDIG 501
           ++HTGD+ 
Sbjct: 453 YYHTGDMA 460

>3l8c_A D-alanine--poly(phosphoribitol) ligase subunit 1; structural genomics, DLTA, ATP-binding, cytoplasm, nucleotide-binding; 2.41A {Streptococcus pyogenes serotype M6} PDB: 3lgx_A* Length = 521

 Score = 63.7 bits (156), Expect = 8e-11
 Identities = 59/326 (18%), Positives = 99/326 (30%), Gaps = 106/326 (32%)

Query: 225 IMYTSGTSGDPKGVVLTHETIATFVSGVDLFLDQFEDKMTVDDVYLSFLPLAHILDRVIE 284
           I++TSGT+G PKGV ++H+ + +F +     ++     +      L+  P +   D    
Sbjct: 150 IIFTSGTTGQPKGVQISHDNLLSFTNW---MIEDAAFDVPKQPQMLAQPPYS--FD---- 200

Query: 285 EYFFRRGASVGYYHGDLNALRDDLMELKPTLLAG-----VPRVFEKIHEGIKKALEELRP 339
                   SV              M   PTL  G     +P+             E +  
Sbjct: 201 -------LSV--------------MYWAPTLALGGTLFALPK-------------ELVAD 226

Query: 340 LRRRIFDALYKYKLAWMNMGYKQREASPLADLLAFRKVKARLGGRLRLVISGGAPLSTE- 398
            ++ +F  + +  +            S     +            L      G  L+   
Sbjct: 227 FKQ-LFTTIAQLPVGIWTS-----TPSFADMAMLSDDFCQAKMPALTHFYFDGEELTVST 280

Query: 399 VEEFLRVTCCAFLVQGYGLTETCGPTTVCFPDEMCMVGTAGPVSVYSELRLEEVPEMGYS 458
             +       A ++  YG TE     TV              +S   E+  E V      
Sbjct: 281 ARKLFERFPSAKIINAYGPTEA----TVA-------------LSAI-EITREMVDNYTRL 322

Query: 459 P------------LDD-----PP--CGEVCVRGKTLFSGYYKNPDLTRESIIDGWF---- 495
           P            +D+          GE+ V G  +  GY  NP+ T E+          
Sbjct: 323 PIGYPKPDSPTYIIDEDGKELSSGEQGEIIVTGPAVSKGYLNNPEKTAEAFFTFKGQPAY 382

Query: 496 HTGDIGQILPNGV----------VKI 511
           HTGDIG +  + +          +K 
Sbjct: 383 HTGDIGSLTEDNILLYGGRLDFQIKY 408

>2vsq_A Surfactin synthetase subunit 3; ligase, peptidyl carrier protein, ligase phosphoprotein, TER module, phosphopantetheine; 2.60A {Bacillus subtilis} Length = 1304

 Score = 59.9 bits (146), Expect = 2e-09
 Identities = 87/485 (17%), Positives = 158/485 (32%), Gaps = 150/485 (30%)

Query: 78  TYKEVYEEVLQIVSALRASGAEPGCRVGIYGANCPQWVEAMEACNALSLI------CVPL 131
           +Y+E+ EE  +I   L+  GA  G  V +Y     + V  +        +       +P+
Sbjct: 491 SYRELDEEANRIARRLQKHGAGKGSVVALYTKRSLELVIGILG------VLKAGAAYLPV 544

Query: 132 YDTLGPGA-VNFILDHAEIDFVFVQDKKVKELLSPDCRSAQRLRVMVCFTSLTAEQKEMA 190
            D   P   ++++L  +    +    +++KE  +    +   L +               
Sbjct: 545 -DPKLPEDRISYMLADSAAACLLTH-QEMKEQAAELPYTGTTLFI--------------- 587

Query: 191 VQTGIKPYSWDEFLHLGKVNEMEILPPQPFNICTIMYTSGTSGDPKGVVLTHETIATFVS 250
                              +    + P   +   IMYTSGT+G PKG + TH  I   V 
Sbjct: 588 --------DDQTRFEEQASDPATAIDPN--DPAYIMYTSGTTGKPKGNITTHANIQGLVK 637

Query: 251 GVDLFLDQFEDKMTVDDVYLSFLPLAHILDRVIEEYF--FRRGASV----GYYHGDLNAL 304
            VD          +  D +LS    A   D    +++      A +     +   D   L
Sbjct: 638 HVDYM------AFSDQDTFLSVSNYA--FDAFTFDFYASMLNAARLIIADEHTLLDTERL 689

Query: 305 RDDLMELKPTLLAGVPRVFEKIHEGIKKALEELRPLRRRIFDALYKYKLAWMNMGYKQRE 364
            D +++    ++     +F  + +      + ++ LR                       
Sbjct: 690 TDLILQENVNVMFATTALFNLLTD---AGEDWMKGLRC---------------------- 724

Query: 365 ASPLADLLAFRKVKARLGGRLRLVISGGAPLSTE-VEEFLRVTCCAFLVQGYGLTETCGP 423
                                  ++ GG   S   V + LR+     L+  YG TE    
Sbjct: 725 -----------------------ILFGGERASVPHVRKALRIMGPGKLINCYGPTE---- 757

Query: 424 TTVCFPDEMCMVGTAGPVSVYSELRLEEVPEMGYSP-------------LDD-----PP- 464
            TV               + +    + ++P+   S              L++     P  
Sbjct: 758 GTVF-------------ATAH---VVHDLPDSISSLPIGKPISNASVYILNEQSQLQPFG 801

Query: 465 -CGEVCVRGKTLFSGYYKNPDLTRESIIDGWFH-------TGDIGQILPNGVVKIIDRKK 516
             GE+C+ G  +  GY    DLT+E  I+  F        TGD+ + LP+G ++   R  
Sbjct: 802 AVGELCISGMGVSKGYVNRADLTKEKFIENPFKPGETLYRTGDLARWLPDGTIEYAGRID 861

Query: 517 NLIKI 521
           + +KI
Sbjct: 862 DQVKI 866

>3ite_A SIDN siderophore synthetase; ligase, non-ribosomal peptide synthesis, NRPS, sidna3, fungal, endophyte; HET: MSE; 2.00A {Neotyphodium lolii} Length = 562

 Score = 55.7 bits (135), Expect = 3e-08
 Identities = 58/322 (18%), Positives = 95/322 (29%), Gaps = 104/322 (32%)

Query: 225 IMYTSGTSGDPKGVVLTHETIATFVSGVDLFLDQFEDK---MTVDDVYLSFLPLAHILDR 281
           ++YTSG++G PKGV ++   +++F       +     K   +     +L     A   D 
Sbjct: 180 LLYTSGSTGTPKGVRVSRHNLSSFSDAWGKLIGNVAPKSLELGGVGKFLCLASRA--FDV 237

Query: 282 VIEEYF--FRRGAS--VGYYHGDLNALRDDLMELKPTLLAGVPRVFEKIHEGIKKALEEL 337
            I E F  +R G     G     L+ L     EL  T    VP + ++         E+ 
Sbjct: 238 HIGEMFLAWRFGLCAVTGERLSMLDDLPRTFRELGVTHAGIVPSLLDQTGL----VPEDA 293

Query: 338 RPLRRRIFDALYKYKLAWMNMGYKQREASPLADLLAFRKVKARLGGRLRLVISGGAPLST 397
             L                                               +  GG  ++ 
Sbjct: 294 PHLVY---------------------------------------------LGVGGEKMTP 308

Query: 398 EVEEFLRVTCCAFLVQGYGLTETCGPTTVCFPDEMCMVGTAGPVSVYSELRLEEVPEMGY 457
             ++    +    LV  YG TE     T+               S    L   +   +G 
Sbjct: 309 RTQQIWSSSDRVALVNVYGPTE----VTIG-------------CSAGRILPDSDTRCIG- 350

Query: 458 SP--------LDD------PP--CGEVCVRGKTLFSGYYKNPDLTRESIIDGW--FHTGD 499
            P        L             GE+ + G  + +GY   PD      I+G   + TGD
Sbjct: 351 HPLGDSVAHVLAPGSNEHVKKGMAGELVIEGSLVANGYLNRPDAKGFCDINGRKMYRTGD 410

Query: 500 IGQILPNGV----------VKI 511
           I ++  +            VK+
Sbjct: 411 IVRMDADSSILFLGRKDEQVKV 432

>3e7w_A D-alanine--poly(phosphoribitol) ligase subunit 1; DLTA, non-ribosomal peptide synthetase, NRPS, adenylation domain, D-alanylation; HET: AMP; 2.28A {Bacillus subtilis} PDB: 3e7x_A* Length = 511

 Score = 54.0 bits (131), Expect = 1e-07
 Identities = 53/284 (18%), Positives = 91/284 (32%), Gaps = 84/284 (29%)

Query: 225 IMYTSGTSGDPKGVVLTHETIATFVSGVDLFLDQFEDKMTVDDVYLSFLPLAHILDRVIE 284
           I+YTSG++G+PKGV ++   + +F   +      F   ++   ++L+  P +   D    
Sbjct: 148 IIYTSGSTGNPKGVQISAANLQSFTDWIC---ADFP--VSGGKIFLNQAPFS--FD---- 196

Query: 285 EYFFRRGASVGYYHGDLNALRDDLMELKPTLLAGVPRVFEKIHEGIKKALEELRPLRRRI 344
                   SV              M+L P L +G         + + K         + +
Sbjct: 197 -------LSV--------------MDLYPCLQSGGTLHCVT-KDAVNKP--------KVL 226

Query: 345 FDALYKYKLAWMNMGYKQREASPLADLLAFRKVKARLGGRLRLVISGGAPLSTE-VEEFL 403
           F+ L K  L            S +   L        L       +  G  L     +  L
Sbjct: 227 FEELKKSGLNVWTS-----TPSFVQMCLMDPGFSQDLLPHADTFMFCGEVLPVSVAKALL 281

Query: 404 RVTCCAFLVQGYGLTETCGPTTVCFPDEMCMVGTAGPVSVYSELRLEEVPEMGYSP---- 459
                A +   YG TE     TV              V+   E+  + +      P    
Sbjct: 282 ERFPKAKIFNTYGPTEA----TVA-------------VTSV-EITNDVISRSESLPVGFA 323

Query: 460 --------LDD-----PP--CGEVCVRGKTLFSGYYKNPDLTRE 488
                   +D+     P    GE+ + G ++  GY   P+LT +
Sbjct: 324 KPDMNIFIMDEEGQPLPEGEKGEIVIAGPSVSRGYLGEPELTEK 367

>4dg8_A PA1221; ANL superfamily, adenylation domain, peptidyl carrier protei ribosomal peptide synthetase, NRPS, valine adenylation, LIG; HET: AMP; 2.15A {Pseudomonas aeruginosa} PDB: 4dg9_A* Length = 620

 Score = 52.9 bits (128), Expect = 2e-07
 Identities = 57/322 (17%), Positives = 87/322 (27%), Gaps = 101/322 (31%)

Query: 225 IMYTSGTSGDPKGVVLTHETIATFVSGVDLFLDQFEDKMTVDDVYLSFLPLAHILDRVIE 284
           I ++SGT+G PK +  TH  I        L L Q          +L   PL+   D    
Sbjct: 169 INFSSGTTGRPKAIACTHAGI------TRLCLGQSFLAFAPQMRFLVNSPLS--FDAATL 220

Query: 285 EYF--FRRGASV---GYYHGDLNALRDDLMELKPTLLAGVPRVFEKIHEGIKKALEELRP 339
           E +     G           D   LR  + E           +F  + +      + L  
Sbjct: 221 EIWGALLNGGCCVLNDLGPLDPGVLRQLIGERGADSAWLTASLFNTLVD---LDPDCLGG 277

Query: 340 LRRRIF--DALYKYKLAWMNMGYKQREASPLADLLAFRKVKARLGGRLRLVISGGAPLST 397
           LR+ +   D L                      +   R+   R                 
Sbjct: 278 LRQLLTGGDIL---------------------SVPHVRRALLRHPRLH------------ 304

Query: 398 EVEEFLRVTCCAFLVQGYGLTETCGPTTVCFPDEMCMVGTAGPV-------SVY---SEL 447
                        LV GYG TE    T      +  +     P+       +V       
Sbjct: 305 -------------LVNGYGPTENTTFTCCHVVTDDDLEEDDIPIGKAIAGTAVLLLDEHG 351

Query: 448 RLEEVPEMGYSPLDDPPCGEVCVRGKTLFSGYYKNPDLTRESIIDGWFH--------TGD 499
           +   + E   +       GE+   G  L  GY  +   TR S ++  +         TGD
Sbjct: 352 QE--IAEPDRA-------GEIVAFGAGLAQGYRNDAARTRASFVELPYRGRLLRAYRTGD 402

Query: 500 IGQILPNGV----------VKI 511
             +    G           VK+
Sbjct: 403 RARYDEQGRLRFIGRGDGQVKL 424

>3fce_A D-alanine--poly(phosphoribitol) ligase subunit 1; DLTA, AMP-forming domain, adenylation, D-alanine protein ligase, ATP complex; HET: ATP; 1.90A {Bacillus cereus} PDB: 3fcc_A* 3dhv_A* Length = 512

 Score = 51.7 bits (125), Expect = 5e-07
 Identities = 50/284 (17%), Positives = 95/284 (33%), Gaps = 84/284 (29%)

Query: 225 IMYTSGTSGDPKGVVLTHETIATFVSGVDLFLDQFEDKMTVDDVYLSFLPLAHILDRVIE 284
           I+YTSG++G+PKGV +T+  + +F        + F   +    V+L+  P +   D    
Sbjct: 149 IIYTSGSTGNPKGVQITYNCLVSFTKWAV---EDFN--LQTGQVFLNQAPFS--FD---- 197

Query: 285 EYFFRRGASVGYYHGDLNALRDDLMELKPTLLAGVPRVFEKIHEGIKKALEELRPLRRRI 344
                   SV              M++ P+L+ G         + I +         + +
Sbjct: 198 -------LSV--------------MDIYPSLVTGGTLWAID-KDMIARP--------KDL 227

Query: 345 FDALYKYKLAWMNMGYKQREASPLADLLAFRKVKARLGGRLRLVISGGAPLSTE-VEEFL 403
           F +L +  +            S     L        +   ++  +  G  L  E   + +
Sbjct: 228 FASLEQSDIQVWTS-----TPSFAEMCLMEASFSESMLPNMKTFLFCGEVLPNEVARKLI 282

Query: 404 RVTCCAFLVQGYGLTETCGPTTVCFPDEMCMVGTAGPVSVYSELRLEEVPEMGYSP---- 459
                A ++  YG TE     TV              V+    +  E + +    P    
Sbjct: 283 ERFPKATIMNTYGPTEA----TVA-------------VTGI-HVTEEVLDQYKSLPVGYC 324

Query: 460 --------LDD-----PP--CGEVCVRGKTLFSGYYKNPDLTRE 488
                   + +     P    GE+ + G ++  GY  +P+LT +
Sbjct: 325 KSDCRLLIMKEDGTIAPDGEKGEIVIVGPSVSVGYLGSPELTEK 368

>1amu_A GRSA, gramicidin synthetase 1; peptide synthetase, adenylate forming; HET: PHE AMP; 1.90A {Brevibacillus brevis} SCOP: e.23.1.1 Length = 563

 Score = 50.6 bits (122), Expect = 1e-06
 Identities = 60/330 (18%), Positives = 103/330 (31%), Gaps = 124/330 (37%)

Query: 225 IMYTSGTSGDPKGVVLTHETIATFVSGVDLFLDQFEDKMTVDDVYLSFLPLAHILDRVIE 284
           ++YTSGT+G+PKG +L H+ I+        F +     +T  D    F  ++   D  + 
Sbjct: 187 VIYTSGTTGNPKGTMLEHKGISNLKVF---FENSLN--VTEKDRIGQFASIS--FDASVW 239

Query: 285 EYF--FRRGASV----GYYHGDLNALRDDLMELKPTLLAGVPRVFEKIHEGIKKALEELR 338
           E F     GAS+         D       + + + T++   P     +        E + 
Sbjct: 240 EMFMALLTGASLYIILKDTINDFVKFEQYINQKEITVITLPPTYVVHLDP------ERIL 293

Query: 339 PLRRRIFDALYKYKLAWMNMGYKQREASPLADLLAFRKVKARLGGRLRLVISGGAPLSTE 398
            ++                                              +I+ G+  S  
Sbjct: 294 SIQT---------------------------------------------LITAGSATSPS 308

Query: 399 -VEEFLRVTCCAFLVQGYGLTETCGPTTVCFPDEMCMVGTAGPVSVYSELRLEEVPEMGY 457
            V ++         +  YG TE    TT+C              + +      +      
Sbjct: 309 LVNKWKEKVT---YINAYGPTE----TTIC-------------ATTW---VATKETIGHS 345

Query: 458 SP------------LDD-----PP--CGEVCVRGKTLFSGYYKNPDLTRESIIDGWFH-- 496
            P            +D+          GE+C+ G+ L  GY+K P+LT +  +D  F   
Sbjct: 346 VPIGAPIQNTQIYIVDENLQLKSVGEAGELCIGGEGLARGYWKRPELTSQKFVDNPFVPG 405

Query: 497 -----TGDIGQILPNGV----------VKI 511
                TGD  + L +G           VKI
Sbjct: 406 EKLYKTGDQARWLSDGNIEYLGRIDNQVKI 435

>1pg4_A Acetyl-COA synthetase; AMP-forming, adenylate-forming, thioester-forming, ligase; HET: COA PRX; 1.75A {Salmonella enterica} SCOP: e.23.1.1 PDB: 1pg3_A* 2p2f_A* 2p2b_A* 2p2q_A* 2p2j_A* 2p20_A* 2p2m_A* Length = 652

 Score = 42.6 bits (101), Expect = 3e-04
 Identities = 14/44 (31%), Positives = 23/44 (52%)

Query: 78  TYKEVYEEVLQIVSALRASGAEPGCRVGIYGANCPQWVEAMEAC 121
           +Y+E++ +V +  + L   G + G  V IY    P+   AM AC
Sbjct: 109 SYRELHRDVCRFANTLLDLGIKKGDVVAIYMPMVPEAAVAMLAC 152

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	660
1mdb_A	539	2,3-dihydroxybenzoate-AMP ligase; adenylation doma	100.0
3g7s_A	549	Long-chain-fatty-acid--COA ligase (FADD-1); protei	100.0
3ni2_A	536	4-coumarate:COA ligase; 4CL, phenylpropanoid biosy	100.0
3etc_A	580	AMP-binding protein; adenylate-forming acyl-COA sy	100.0
3r44_A	517	Fatty acyl COA synthetase FADD13 (fatty-acyl-COA s	100.0
1v25_A	541	Long-chain-fatty-acid-COA synthetase; ligase, stru	100.0
3o83_A	544	Peptide arylation enzyme; ligase, adenylation of 2	100.0
1t5h_X	504	4-chlorobenzoyl COA ligase; adenylate-forming coen	100.0
3rix_A	550	Luciferase, luciferin 4-monooxygenase; oxidoreduct	100.0
2d1s_A	548	Luciferase, luciferin 4-monooxygenase; alpha/beta,	100.0
3c5e_A	570	Acyl-coenzyme A synthetase ACSM2A, mitochondrial;	100.0
1pg4_A	652	Acetyl-COA synthetase; AMP-forming, adenylate-form	100.0
4fuq_A	503	Malonyl COA synthetase; ANL superfamily, methylma	100.0
1ry2_A	663	Acetyl-coenzyme A synthetase 1, acyl-activating en	100.0
3ivr_A	509	Putative long-chain-fatty-acid COA ligase; structu	100.0
3e7w_A	511	D-alanine--poly(phosphoribitol) ligase subunit 1;	100.0
3fce_A	512	D-alanine--poly(phosphoribitol) ligase subunit 1;	100.0
2v7b_A	529	Benzoate-coenzyme A ligase; benzoate oxidation, be	100.0
4gr5_A	570	Non-ribosomal peptide synthetase; MBTH-like domain	100.0
3rg2_A	617	Enterobactin synthase component E (ENTE), 2,3-DIH	100.0
4dg8_A	620	PA1221; ANL superfamily, adenylation domain, pepti	100.0
3l8c_A	521	D-alanine--poly(phosphoribitol) ligase subunit 1;	100.0
1amu_A	563	GRSA, gramicidin synthetase 1; peptide synthetase,	100.0
3ipl_A	501	2-succinylbenzoate--COA ligase; structural genomic	100.0
3tsy_A	979	Fusion protein 4-coumarate--COA ligase 1, resvera	100.0
3nyq_A	505	Malonyl-COA ligase; A/B topology ababa sandwich be	100.0
3gqw_A	576	Fatty acid AMP ligase; FAAL, E. coli, ATP-dependen	100.0
3kxw_A	590	Saframycin MX1 synthetase B; fatty acid AMP ligase	100.0
3ite_A	562	SIDN siderophore synthetase; ligase, non-ribosomal	100.0
2vsq_A	1304	Surfactin synthetase subunit 3; ligase, peptidyl c	100.0
3t5a_A	480	Long-chain-fatty-acid--AMP ligase FADD28; acetyl-C	100.0
4gs5_A	358	Acyl-COA synthetase (AMP-forming)/AMP-acid ligase	100.0
3qov_A	436	Phenylacetate-coenzyme A ligase; acetyl-COA synthe	100.0
2y4o_A	443	Phenylacetate-coenzyme A ligase; phenylacetic acid	100.0
2y27_A	437	Phenylacetate-coenzyme A ligase; phenylacetic acid	100.0
3hgu_A	369	EHPF; phenazine, antibiotic, biosynthetic protein;	99.95
3lax_A	109	Phenylacetate-coenzyme A ligase; structural genomi	99.33
3gxs_A	109	Phenylacetate-coenzyme A ligase; APC62324.1, struc	99.21
4eql_A	581	4-substituted benzoates-glutamate ligase GH3.12; f	98.69
4b2g_A	609	GH3-1 auxin conjugating enzyme; signaling protein,	98.58
4epl_A	581	Jasmonic acid-amido synthetase JAR1; ANL adenylati	98.41
3qov_A	436	Phenylacetate-coenzyme A ligase; acetyl-COA synthe	87.16
2y4o_A	443	Phenylacetate-coenzyme A ligase; phenylacetic acid	86.87
2y27_A	437	Phenylacetate-coenzyme A ligase; phenylacetic acid	86.68
3ipl_A	501	2-succinylbenzoate--COA ligase; structural genomic	81.88

>1mdb_A 2,3-dihydroxybenzoate-AMP ligase; adenylation domain, peptide synthetase, antibiotic biosynthesis, siderophore formation; HET: AMP DBH; 2.15A {Bacillus subtilis} SCOP: e.23.1.1 PDB: 1md9_A* 1mdf_A

Probab=100.00  E-value=5.5e-76  Score=647.95  Aligned_cols=504  Identities=19%  Similarity=0.174  Sum_probs=412.3

Q ss_pred             CCcHHHHHHHHHHhCCCCCceeeeccccCCCCCceEEeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEeCCchhHHHHHHH
Q 006111           41 LNTAWDIFSMSVQKYPGNRMLGWRPFVDGKFGPYVWKTYKEVYEEVLQIVSALRASGAEPGCRVGIYGANCPQWVEAMEA  120 (660)
Q Consensus        41 ~~ti~~~l~~~a~~~pd~~a~~~~~~~d~~~~~~~~~Ty~ql~~~v~~lA~~L~~~Gl~~gd~V~l~~~n~~e~~~~~lA  120 (660)
                      ..++.++|+++++++||++|+++.   +      +++||+||.++++++|++|++.|+++||+|+++++|++++++++||
T Consensus        24 ~~tl~~~l~~~a~~~p~~~A~~~~---~------~~~Ty~eL~~~~~~lA~~L~~~Gv~~gd~V~i~~~~~~~~~~~~lA   94 (539)
T 1mdb_A           24 GETFGDLLRDRAAKYGDRIAITCG---N------THWSYRELDTRADRLAAGFQKLGIQQKDRVVVQLPNIKEFFEVIFA   94 (539)
T ss_dssp             SCCHHHHHHHHHHHHTTSEEEEET---T------EEEEHHHHHHHHHHHHHHHHHHTCCTTCEEEECCCSSHHHHHHHHH
T ss_pred             CCCHHHHHHHHHHHCCCCEEEEeC---C------CcccHHHHHHHHHHHHHHHHHcCCCCCCEEEEEcCCcHHHHHHHHH
Confidence            368999999999999999999865   3      6899999999999999999999999999999999999999999999


Q ss_pred             HHhCCCeEEecCCCCChhHHHHHHhcccceEEEEccchhh----hhhccccccccCccEEEEecCCcHHHHHHHhhCCcc
Q 006111          121 CNALSLICVPLYDTLGPGAVNFILDHAEIDFVFVQDKKVK----ELLSPDCRSAQRLRVMVCFTSLTAEQKEMAVQTGIK  196 (660)
Q Consensus       121 ~~~~G~~~vpl~~~~~~~~l~~~l~~~~~~~ii~~~~~~~----~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~  196 (660)
                      |+++|++++|++|.++.+++.++++.++++++|+++....    ..........+.+..++..++..             
T Consensus        95 ~~~~Ga~~vpl~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------------  161 (539)
T 1mdb_A           95 LFRLGALPVFALPSHRSSEITYFCEFAEAAAYIIPDAYSGFDYRSLARQVQSKLPTLKNIIVAGEAE-------------  161 (539)
T ss_dssp             HHHHTCEEEECCTTCCHHHHHHHHHHTTCSEEEEESEETTEEHHHHHHHHHHHCTTCCCEEEESCCT-------------
T ss_pred             HHHcCeEEecCCCCCCHHHHHHHHHhCCCCEEEeccccccccHHHHHHHHHhcCCCccEEEEcCCcc-------------
Confidence            9999999999999999999999999999999999876321    11111111223344444433211             


Q ss_pred             eeeHHHHHhcCccCCccCCCCCCCceEEEEecCCCCCCCceeeecchhHHHHhhhhhhhcccccCCCCCCcEEEEecChh
Q 006111          197 PYSWDEFLHLGKVNEMEILPPQPFNICTIMYTSGTSGDPKGVVLTHETIATFVSGVDLFLDQFEDKMTVDDVYLSFLPLA  276 (660)
Q Consensus       197 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~TSGTTG~pK~v~~th~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~pl~  276 (660)
                        .+.++.... ..........++++++|+|||||||.||+|++||+++.+.+......+     ++..++++++.+|++
T Consensus       162 --~~~~~~~~~-~~~~~~~~~~~~d~a~i~~TSGTTG~PKgV~~th~~~~~~~~~~~~~~-----~~~~~d~~l~~~p~~  233 (539)
T 1mdb_A          162 --EFLPLEDLH-TEPVKLPEVKSSDVAFLQLSGGSTGLSKLIPRTHDDYIYSLKRSVEVC-----WLDHSTVYLAALPMA  233 (539)
T ss_dssp             --TSEEGGGCC-CCCCCCCCCCTTSEEEEEECCCSSSSCCEEEEEHHHHHHHHHHHHHHH-----TCCTTCEEEECSCTT
T ss_pred             --chhhhhhcc-ccccccCCCCcCceEEEEeCCCcCCCCcEEEEehHHHHHHHHHHHHhh-----CCCCCCEEEEeeccc
Confidence              011111111 111122345789999999999999999999999999999988877766     788999999999999


Q ss_pred             HHHHHHH--HHHHhhcCcEEEEecC-ChhhHHHHhhhhcCeEEEechHHHHHHHHHHHHHHHhhchHHHHHHHHHHHHHH
Q 006111          277 HILDRVI--EEYFFRRGASVGYYHG-DLNALRDDLMELKPTLLAGVPRVFEKIHEGIKKALEELRPLRRRIFDALYKYKL  353 (660)
Q Consensus       277 ~~~g~~~--~l~~l~~G~~~v~~~~-~~~~~~~~i~~~~~t~~~~~p~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~  353 (660)
                      |.+++..  ++.+++.|+++++.+. ++..+++.|+++++|+++++|+++..+++......                   
T Consensus       234 h~~~~~~~~~~~~l~~G~~~v~~~~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~-------------------  294 (539)
T 1mdb_A          234 HNYPLSSPGVLGVLYAGGRVVLSPSPSPDDAFPLIEREKVTITALVPPLAMVWMDAASSRR-------------------  294 (539)
T ss_dssp             SHHHHHSSHHHHHHHTTCEEEECSSSSHHHHHHHHHHHTCSEEEECHHHHHHHHHHHHHCC-------------------
T ss_pred             ccchhhHHHHHHHHHhCCEEEECCCCCHHHHHHHHHHcCCeEEEccHHHHHHHHhCccccC-------------------
Confidence            9999875  6788999999999876 89999999999999999999999999876432110                   


Q ss_pred             HHHhhCCCCCCcchhhhHHHHHHHHHHhCCcEeEEEEccCCCCHHHHHHHHHhcCCceeeecCCCCCCCceecccCCCcc
Q 006111          354 AWMNMGYKQREASPLADLLAFRKVKARLGGRLRLVISGGAPLSTEVEEFLRVTCCAFLVQGYGLTETCGPTTVCFPDEMC  433 (660)
Q Consensus       354 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lr~i~~~G~~l~~~~~~~~~~~~~~~v~~~YG~tE~~~~~~~~~~~~~~  433 (660)
                                                ...++||.+++||+++++++.+++.+.+|+++++.||+||++..++........
T Consensus       295 --------------------------~~l~~lr~~~~gG~~l~~~~~~~~~~~~~~~~~~~YG~TE~~~~~~~~~~~~~~  348 (539)
T 1mdb_A          295 --------------------------DDLSSLQVLQVGGAKFSAEAARRVKAVFGCTLQQVFGMAEGLVNYTRLDDPEEI  348 (539)
T ss_dssp             --------------------------CCCTTCCEEEEESSCCCHHHHTTHHHHTCSEEEEEEECTTSCEEECCTTSCHHH
T ss_pred             --------------------------CCccceeEEEEcCCCCCHHHHHHHHHHhCCcEEEEEcCCCCcccccCCCCcHHh
Confidence                                      011489999999999999999999998999999999999965433322222223


Q ss_pred             ccCccCCCccC-eeEEeeecCCCCCCCCCCCCCceEEEccCCcccccCCCchhhhhcc-cCCccccCceEEECCCCcEEE
Q 006111          434 MVGTAGPVSVY-SELRLEEVPEMGYSPLDDPPCGEVCVRGKTLFSGYYKNPDLTRESI-IDGWFHTGDIGQILPNGVVKI  511 (660)
Q Consensus       434 ~~~~~G~~~~~-~~v~ivd~~~~~~~~~~~~~~Gei~v~g~~~~~gy~~~~~~~~~~~-~~g~~~TGDl~~~~~~G~l~~  511 (660)
                      ..+++|+|+++ .+++|+| +++..  ++.|+.|||+|+||+++.||+++++.+.+.| .+|||+|||+|++|+||+|++
T Consensus       349 ~~~~~G~p~~~~~~~~i~d-~~~~~--~~~g~~GEl~v~g~~v~~GY~~~~~~t~~~f~~~g~~~TGDlg~~~~dG~l~~  425 (539)
T 1mdb_A          349 IVNTQGKPMSPYDESRVWD-DHDRD--VKPGETGHLLTRGPYTIRGYYKAEEHNAASFTEDGFYRTGDIVRLTRDGYIVV  425 (539)
T ss_dssp             HHHCCCEESSTTCEEEEEC-TTSCB--CCTTCCEEEEEECTTSCSSCTTCHHHHHHHBCTTSCEEEEEEEEECTTSCEEE
T ss_pred             cCCCCCcccCCCceEEEEC-CCCCC--CcCCCcceEEeeCcccchhhcCChhhhhhhccCCCCeecCceEEECCCCcEEE
Confidence            34789999975 4899999 66654  4556899999999999999999999999999 799999999999999999999


Q ss_pred             EeccCCeeEcCCCeeecchhHHHHHhcCcCcceEEEEecCCC---CeEEEEEEcChhhHHHHHHHCCCCCcHHHHhccHH
Q 006111          512 IDRKKNLIKISQGEYVALEYLENVYCVAPIIEDIWVYGDSLK---SMLVAVVVPCEEDTKKWAYSNGHAGSFLELCSLVQ  588 (660)
Q Consensus       512 ~GR~~d~i~~~~G~~v~~~~iE~~l~~~p~V~~~~V~~~~~~---~~~~a~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~  588 (660)
                      .||.||+||+ +|++|+|.+||++|.+||+|.+|+|++.+++   +.++|+|++.+..         .        .   
T Consensus       426 ~GR~dd~ik~-~G~~v~p~eIE~~l~~~p~V~~a~vv~~~~~~~g~~~~a~vv~~~~~---------~--------~---  484 (539)
T 1mdb_A          426 EGRAKDQINR-GGEKVAAEEVENHLLAHPAVHDAAMVSMPDQFLGERSCVFIIPRDEA---------P--------K---  484 (539)
T ss_dssp             EEEGGGCEEC-SSCEECHHHHHHHHTTSTTEEEEEEEEEEETTTEEEEEEEEEESSSC---------C--------C---
T ss_pred             eccccceEEE-CCEEECHHHHHHHHHhCCCcceEEEEeccccccCceEEEEEEECCCC---------C--------C---
Confidence            9999999996 8999999999999999999999999997654   4788999887421         0        1   


Q ss_pred             HHHHHHHHHHHHHHhCCCCCceeeeEEEEecCCCCCCCCccccccccchHHHHHHHHHHHHHHHhh
Q 006111          589 LQNYILSELKNAAERNKLRGFEHIKGVILDPRPFDMERDLVTATLKKKRNKLLIYYQVEIDQLYEK  654 (660)
Q Consensus       589 ~~~~~~~~l~~~~~~~~l~~~~~p~~i~~~~~~~~~~~~P~t~~GKv~R~~l~~~~~~~i~~~y~~  654 (660)
                           .++|++++++..||.|++|+.|+++      +.+|+|++||++|++|+++|.++|+++|++
T Consensus       485 -----~~~l~~~l~~~~L~~~~~P~~i~~v------~~lP~t~~GKi~r~~L~~~~~~~i~~~y~~  539 (539)
T 1mdb_A          485 -----AAELKAFLRERGLAAYKIPDRVEFV------ESFPQTGVGKVSKKALREAISEKLLAGFKK  539 (539)
T ss_dssp             -----HHHHHHHHHHTTCCGGGSCSEEEEC------SSCCBCTTSCBCHHHHHHHHHHHHHTC---
T ss_pred             -----HHHHHHHHHhCCCCcccCCCEEEEe------ccCCCCCCcCEeHHHHHHHHHHHHhccccC
Confidence                 2344455543359999999999987      446999999999999999999999999973

>3g7s_A Long-chain-fatty-acid--COA ligase (FADD-1); protein structure initiative, PSI-II, NYSGXRC, 11193J, structural genomics; 2.15A {Archaeoglobus fulgidus dsm 4304}

Probab=100.00  E-value=1.5e-75  Score=646.23  Aligned_cols=517  Identities=20%  Similarity=0.226  Sum_probs=395.0

Q ss_pred             CCCCCCCCCCCcHHHHHHHHHHhCCCCCceeeeccccC--CCCCceEEeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEeC
Q 006111           32 NGFPSVDSDLNTAWDIFSMSVQKYPGNRMLGWRPFVDG--KFGPYVWKTYKEVYEEVLQIVSALRASGAEPGCRVGIYGA  109 (660)
Q Consensus        32 ~~~~~~~~~~~ti~~~l~~~a~~~pd~~a~~~~~~~d~--~~~~~~~~Ty~ql~~~v~~lA~~L~~~Gl~~gd~V~l~~~  109 (660)
                      .++|..+....++.++|+++++++||++|+++.   ++  ..+..+++||+||.++++++|++|.+.|+++||+|+++++
T Consensus         9 ~~~p~~~~~~~~l~~~l~~~a~~~p~~~A~~~~---~~~~~~~~~~~~Ty~el~~~~~~lA~~L~~~Gv~~gd~V~i~~~   85 (549)
T 3g7s_A            9 IGFPSLYYPKISLADRIDAAAEKFGEKTAIISA---EPKFPSEFPESMNFLEICEVTKKLASGISRKGVRKGEHVGVCIP   85 (549)
T ss_dssp             CCCCCCCCCCCCTTHHHHHHHHHHTTSEEEEEE---SSCCCCSSCSEEEHHHHHHHHHHHHHHHHHTTCCTTCEEEEECC
T ss_pred             cCCCCCCcCCCCHHHHHHHHHHhCCCceEEEeC---CCcccccccceeeHHHHHHHHHHHHHHHHHcCCCCCCEEEEECC
Confidence            456777777899999999999999999999987   42  1334478999999999999999999999999999999999


Q ss_pred             CchhHHHHHHHHHhCCCeEEecCCCCChhHHHHHHhcccceEEEEccchhhhhhccccccccCccEEEEecCCcHHHHHH
Q 006111          110 NCPQWVEAMEACNALSLICVPLYDTLGPGAVNFILDHAEIDFVFVQDKKVKELLSPDCRSAQRLRVMVCFTSLTAEQKEM  189 (660)
Q Consensus       110 n~~e~~~~~lA~~~~G~~~vpl~~~~~~~~l~~~l~~~~~~~ii~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~  189 (660)
                      |++++++++|||+++|++++|++|.++.+++.+++++++++++|++......+......  .....++..+..       
T Consensus        86 ~~~~~~~~~lA~~~~G~~~vpl~~~~~~~~l~~il~~~~~~~~i~~~~~~~~~~~~~~~--~~~~~~~~~~~~-------  156 (549)
T 3g7s_A           86 NSIDYVMTIYALWRVAATPVPINPMYKSFELEHILNDSEATTLVVHSMLYENFKPVLEK--TGVERVFVVGGE-------  156 (549)
T ss_dssp             SSHHHHHHHHHHHHTTCEEEECCTTCCHHHHHHHHHHTTCSEEEEEGGGHHHHHHHHTT--SCCCEEEEETCS-------
T ss_pred             CCHHHHHHHHHHHHhCCEEEccCCCCCHHHHHHHHHhcCCCEEEEChHHHHHHHHHHhh--CCCcEEEEeCCC-------
Confidence            99999999999999999999999999999999999999999999998876655433221  124455554432       


Q ss_pred             HhhCCcceeeHHHHHhcCccCCccCCCCCCCceEEEEecCCCCCCCceeeecchhHHHHhhhhhhhcccccCCCCCCcEE
Q 006111          190 AVQTGIKPYSWDEFLHLGKVNEMEILPPQPFNICTIMYTSGTSGDPKGVVLTHETIATFVSGVDLFLDQFEDKMTVDDVY  269 (660)
Q Consensus       190 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~TSGTTG~pK~v~~th~~l~~~~~~~~~~~~~~~~~~~~~~~~  269 (660)
                             ..++.++...............++++++|+|||||||.||+|+++|+++.+.+..+...+     ++..++++
T Consensus       157 -------~~~~~~~~~~~~~~~~~~~~~~~~d~a~i~~TSGTTG~PKgV~~sh~~l~~~~~~~~~~~-----~~~~~d~~  224 (549)
T 3g7s_A          157 -------VNSLSEVMDSGSEDFENVKVNPEEDVALIPYTGGTTGMPKGVMLTHFNLAANALQLAVAT-----GLSHMDTI  224 (549)
T ss_dssp             -------SSCHHHHHHHSCSCCCCCCCCTTTSEEECCEECCCCC-CEEEEEEHHHHHHHHHHHHHHH-----CCCTTCEE
T ss_pred             -------CcCHHHHHhcCccccccccCCCCCCEEEEEECCCccCCCceEEEcHHHHHHHHHHHHHHc-----CCCCCCEE
Confidence                   234556655443222222222348999999999999999999999999999998887777     88999999


Q ss_pred             EEecChhHHHHHHHHHHHhhcCcEEEEecC-ChhhHHHHhhhhcCeEEEechHHHHHHHHHHHHHHHhhchHHHHHHHHH
Q 006111          270 LSFLPLAHILDRVIEEYFFRRGASVGYYHG-DLNALRDDLMELKPTLLAGVPRVFEKIHEGIKKALEELRPLRRRIFDAL  348 (660)
Q Consensus       270 l~~~pl~~~~g~~~~l~~l~~G~~~v~~~~-~~~~~~~~i~~~~~t~~~~~p~~~~~l~~~~~~~~~~~~~~~~~~~~~~  348 (660)
                      ++++|++|.+++...+.++..|+++++.+. ++..+++.|+++++|+++++|+++..|.+........            
T Consensus       225 ~~~~p~~~~~~~~~~~~~l~~G~~~~~~~~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~------------  292 (549)
T 3g7s_A          225 VGCMPMFHSAEFGLVNLMVTVGNEYVVMGMFNQEMLAENIEKYKGTFSWAVPPALNVLVNTLESSNKT------------  292 (549)
T ss_dssp             ECCSCTTSHHHHHHHTTHHHHCCEEEEESSCCHHHHHHHHHHTTCCEEEECHHHHHHHHHHHHHSCCC------------
T ss_pred             EEeCcHHHHHHHHHHHHHHhcCceEEEcCCCCHHHHHHHHHHhCCeEEEeCCHHHHHHHhhhhhhccc------------
Confidence            999999999998888888999999999876 9999999999999999999999999987653321100            


Q ss_pred             HHHHHHHHhhCCCCCCcchhhhHHHHHHHHHHhCCcEeEEEEccCCCCHHHHHHHHHh----cC---CceeeecCCCCCC
Q 006111          349 YKYKLAWMNMGYKQREASPLADLLAFRKVKARLGGRLRLVISGGAPLSTEVEEFLRVT----CC---AFLVQGYGLTETC  421 (660)
Q Consensus       349 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lr~i~~~G~~l~~~~~~~~~~~----~~---~~v~~~YG~tE~~  421 (660)
                                             .        ..+++|.+++||+++++++.+.+.+.    ++   +.+++.||+||++
T Consensus       293 -----------------------~--------~~~~lr~~~~gg~~l~~~~~~~~~~~~~~~~~~~~~~~~~~YG~TE~~  341 (549)
T 3g7s_A          293 -----------------------Y--------DWSYLKVFATGAWPVAPALVEKLLKLAAEKCNNPRLRHNQIWGMTEAC  341 (549)
T ss_dssp             -----------------------C--------CCTTCCEEEEESSCCCHHHHHHHHHHHHHHSSCTTCEEEEEEECGGGS
T ss_pred             -----------------------C--------CccceeEEEeCCccCCHHHHHHHHHHHHhhcCCccccccceEeccccc
Confidence                                   0        11489999999999999999999887    66   8899999999999


Q ss_pred             CceecccCCCccccCccCCCccCeeEEeeecCCCCCCCCCCCCCceEEEccCCcccccCCCchhhhhcc---cCC--ccc
Q 006111          422 GPTTVCFPDEMCMVGTAGPVSVYSELRLEEVPEMGYSPLDDPPCGEVCVRGKTLFSGYYKNPDLTRESI---IDG--WFH  496 (660)
Q Consensus       422 ~~~~~~~~~~~~~~~~~G~~~~~~~v~ivd~~~~~~~~~~~~~~Gei~v~g~~~~~gy~~~~~~~~~~~---~~g--~~~  496 (660)
                      .+++..........+++|.|+++++++|+|.+++.  +++.|+.|||+|+||+++.||+++++.+.+.|   .+|  ||+
T Consensus       342 ~~~~~~~~~~~~~~~~~G~p~~~~~~~i~d~~~g~--~~~~g~~GEl~v~g~~v~~GY~~~~~~t~~~f~~~~~g~~~~~  419 (549)
T 3g7s_A          342 PMVTTNPPLRLDKSTTQGVPMSDIELKVISLEDGR--ELGVGESGEIVIRGPNIFKGYWKREKENQECWWYDEKGRKFFR  419 (549)
T ss_dssp             SEEEECCGGGGGGTTSCCEECTTCEEEEECSSSCC--EECTTCCEEEEEESTTSCSEETTCTTGGGTSEEECTTCCEEEE
T ss_pred             hhhhcCCccccCcCCCccccCCCCEEEEEeCCCCc--CCCCCCceEEEEECcchhhhhCCChhhhhhhhhccCCCCceEc
Confidence            98877665554556899999999999999944443  45567899999999999999999999999998   678  999


Q ss_pred             cCceEEECCCCcEEEEeccCCeeEcCCCeeecchhHHHHHhcCcCcceEEEEecCCC---CeEEEEEEcChhhHHHHHHH
Q 006111          497 TGDIGQILPNGVVKIIDRKKNLIKISQGEYVALEYLENVYCVAPIIEDIWVYGDSLK---SMLVAVVVPCEEDTKKWAYS  573 (660)
Q Consensus       497 TGDl~~~~~~G~l~~~GR~~d~i~~~~G~~v~~~~iE~~l~~~p~V~~~~V~~~~~~---~~~~a~v~~~~~~~~~~~~~  573 (660)
                      |||+|++|+||.|+++||.||+||+ +|++|+|.|||++|.+||+|.+|+|++.+++   +.++|+|++.++..      
T Consensus       420 TGDl~~~~~dG~l~~~GR~dd~ik~-~G~~v~p~eIE~~l~~~p~V~~a~Vv~~~~~~~g~~~~a~vv~~~~~~------  492 (549)
T 3g7s_A          420 TGDVGFIDEEGFLHFQDRVKEVIKY-KGYTIAPFELEALLMKHEAVMDVAVIGKPDEEAGEVPKAFIVLKPEYR------  492 (549)
T ss_dssp             EEEEEEECTTSCEEEEEEC-------------CHHHHHHHTTSTTEEEEEEECCCC------CEEEEEECSTTT------
T ss_pred             cCcEEEEcCCceEEEeccccceEEE-CCEEECHHHHHHHHHhCCCeeeEEEEeeEccccCceEEEEEEECCCcc------
Confidence            9999999999999999999999997 8999999999999999999999999997755   47899999887520      


Q ss_pred             CCCCCcHHHHhccHHHHHHHHHHHHHHHHhCCCCCceeeeEEEEecCCCCCCCCccccccccchHHHHHHHHHH
Q 006111          574 NGHAGSFLELCSLVQLQNYILSELKNAAERNKLRGFEHIKGVILDPRPFDMERDLVTATLKKKRNKLLIYYQVE  647 (660)
Q Consensus       574 ~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~l~~~~~p~~i~~~~~~~~~~~~P~t~~GKv~R~~l~~~~~~~  647 (660)
                        ...      .        .++|+++++ .+||.|++|+.|+++++      +|+|++||++|++|++++.+.
T Consensus       493 --~~~------~--------~~~l~~~l~-~~L~~~~~P~~i~~v~~------lP~t~~GKi~R~~L~~~~~~~  543 (549)
T 3g7s_A          493 --GKV------D--------EEDIIEWVR-ERISGYKRVREVEFVEE------LPRTASGKLLRRLLREKEAEG  543 (549)
T ss_dssp             --TSC------C--------HHHHHHHHH-TTCC-----CCCCEEEE------CC-------------------
T ss_pred             --CcC------C--------HHHHHHHHH-HhccCcccceEEEEecc------CCCCCCcCEeHHHHHHHhhcc
Confidence              000      1        234445554 78999999999998744      589999999999999888653

>3ni2_A 4-coumarate:COA ligase; 4CL, phenylpropanoid biosynthesis; HET: AYL EPE; 1.90A {Populus tomentosa} PDB: 3a9v_A* 3a9u_A*

Probab=100.00  E-value=4.5e-75  Score=640.63  Aligned_cols=521  Identities=26%  Similarity=0.313  Sum_probs=422.4

Q ss_pred             CCCCceeccccCCCCCCCCCCCCcHHHHHHHHHHhCCCCCceeeeccccCCCCCceEEeHHHHHHHHHHHHHHHHHcCCC
Q 006111           20 SVGPVYRNLLASNGFPSVDSDLNTAWDIFSMSVQKYPGNRMLGWRPFVDGKFGPYVWKTYKEVYEEVLQIVSALRASGAE   99 (660)
Q Consensus        20 ~~~~~~~~~~~~~~~~~~~~~~~ti~~~l~~~a~~~pd~~a~~~~~~~d~~~~~~~~~Ty~ql~~~v~~lA~~L~~~Gl~   99 (660)
                      .+..++++...+...|    ...++.++|.++++++||++|+++.   ++.    +++||+||.++++++|++|++.|++
T Consensus         4 ~~~~i~~~~~~~~~~p----~~~~l~~~l~~~a~~~p~~~a~~~~---~~~----~~~Ty~el~~~~~~lA~~L~~~Gv~   72 (536)
T 3ni2_A            4 QEEFIFRSKLPDIYIP----KNLPLHSYVLENLSNHSSKPCLING---ANG----DVYTYADVELTARRVASGLNKIGIQ   72 (536)
T ss_dssp             -CCCCBCCSSCCCCCC----SSCCHHHHHTTTGGGSTTSEEEEET---TTC----CEEEHHHHHHHHHHHHHHHHHTTCC
T ss_pred             ccceEEecCCCCCCCC----CCCcHHHHHHHHhhcCCCceEEEEC---CCC----CEEEHHHHHHHHHHHHHHHHHcCCC
Confidence            4445666554444333    3478999999999999999999875   321    5899999999999999999999999


Q ss_pred             CCCEEEEEeCCchhHHHHHHHHHhCCCeEEecCCCCChhHHHHHHhcccceEEEEccchhhhhhccccccccCccEEEEe
Q 006111          100 PGCRVGIYGANCPQWVEAMEACNALSLICVPLYDTLGPGAVNFILDHAEIDFVFVQDKKVKELLSPDCRSAQRLRVMVCF  179 (660)
Q Consensus       100 ~gd~V~l~~~n~~e~~~~~lA~~~~G~~~vpl~~~~~~~~l~~~l~~~~~~~ii~~~~~~~~~~~~~~~~~~~~~~i~~~  179 (660)
                      +||+|+++++|++++++++|||+++|++++|++|.++.+++.++++.++++++|++......+.+.....  .. .++.+
T Consensus        73 ~gd~V~i~~~~~~~~~~~~la~~~~Gav~vpl~~~~~~~~l~~~l~~~~~~~~i~~~~~~~~~~~~~~~~--~~-~~~~~  149 (536)
T 3ni2_A           73 QGDVIMLFLPSSPEFVLAFLGASHRGAIITAANPFSTPAELAKHAKASRAKLLITQACYYEKVKDFARES--DV-KVMCV  149 (536)
T ss_dssp             TTCEEEEECCSSHHHHHHHHHHHHHTCEEEECCTTCCHHHHHHHHHHHTEEEEEECGGGTHHHHHHHHHH--TC-EEEES
T ss_pred             CCCEEEEEcCCcHHHHHHHHHHHHhCCEEeccCCCCCHHHHHHHHHhcCCEEEEEChHHHHHHHHHHhhc--Cc-eEEEe
Confidence            9999999999999999999999999999999999999999999999999999999987766554332211  12 34444


Q ss_pred             cCCcHHHHHHHhhCCcceeeHHHHHhcCccCCccCCCCCCCceEEEEecCCCCCCCceeeecchhHHHHhhhhhhhcccc
Q 006111          180 TSLTAEQKEMAVQTGIKPYSWDEFLHLGKVNEMEILPPQPFNICTIMYTSGTSGDPKGVVLTHETIATFVSGVDLFLDQF  259 (660)
Q Consensus       180 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~TSGTTG~pK~v~~th~~l~~~~~~~~~~~~~~  259 (660)
                      +...           .....+.++..... ...+.....++++++|+|||||||.||+|++||+++++.+........ .
T Consensus       150 ~~~~-----------~~~~~~~~~~~~~~-~~~~~~~~~~~d~a~i~~TSGTTG~PKgv~~th~~l~~~~~~~~~~~~-~  216 (536)
T 3ni2_A          150 DSAP-----------DGCLHFSELTQADE-NEAPQVDISPDDVVALPYSSGTTGLPKGVMLTHKGLITSVAQQVDGDN-P  216 (536)
T ss_dssp             SCCC-----------TTCEETHHHHTSCG-GGCCCCCCCTTSEEECCEECTTSSSCEEEEEEHHHHHHHHHHHHCSSS-C
T ss_pred             cCCC-----------CCccCHHHHhhccc-cccccCCCCccCEEEEEcCCCccccchHHHhhHHHHHHHHHHHHhhcc-c
Confidence            4321           12445666665432 223344567899999999999999999999999999888765433211 0


Q ss_pred             cCCCCCCcEEEEecChhHHHHHHH-HHHHhhcCcEEEEecC-ChhhHHHHhhhhcCeEEEechHHHHHHHHHHHHHHHhh
Q 006111          260 EDKMTVDDVYLSFLPLAHILDRVI-EEYFFRRGASVGYYHG-DLNALRDDLMELKPTLLAGVPRVFEKIHEGIKKALEEL  337 (660)
Q Consensus       260 ~~~~~~~~~~l~~~pl~~~~g~~~-~l~~l~~G~~~v~~~~-~~~~~~~~i~~~~~t~~~~~p~~~~~l~~~~~~~~~~~  337 (660)
                      ...+..++++++.+|++|.+++.. .+.++..|+++++.+. ++..+++.|+++++|+++++|+++..+.+..       
T Consensus       217 ~~~~~~~d~~l~~~p~~h~~~~~~~~~~~l~~G~~~v~~~~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~-------  289 (536)
T 3ni2_A          217 NLYFHSEDVILCVLPMFHIYALNSIMLCGLRVGAPILIMPKFEIGSLLGLIEKYKVSIAPVVPPVMMSIAKSP-------  289 (536)
T ss_dssp             SSCCCTTCCEEECSCTTSHHHHHHTHHHHHHHTCCEEECSSCCHHHHHHHHHHHTCCEEEECHHHHHHHHTCS-------
T ss_pred             cccCCCCCEEEEecChHHHHHHHHHHHHHHhcCCEEEEcCCCCHHHHHHHHHHhCCeEEEccHHHHHHHHhCc-------
Confidence            125788999999999999999865 6778999999999876 9999999999999999999999999886421       


Q ss_pred             chHHHHHHHHHHHHHHHHHhhCCCCCCcchhhhHHHHHHHHHHhCCcEeEEEEccCCCCHHHHHHHHHhc-CCceeeecC
Q 006111          338 RPLRRRIFDALYKYKLAWMNMGYKQREASPLADLLAFRKVKARLGGRLRLVISGGAPLSTEVEEFLRVTC-CAFLVQGYG  416 (660)
Q Consensus       338 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lr~i~~~G~~l~~~~~~~~~~~~-~~~v~~~YG  416 (660)
                                                    ..+..++        ++||.+++||+++++++.+.+++.+ ++.+++.||
T Consensus       290 ------------------------------~~~~~~l--------~~lr~i~~gGe~l~~~~~~~~~~~~~~~~l~~~YG  331 (536)
T 3ni2_A          290 ------------------------------DLDKHDL--------SSLRMIKSGGAPLGKELEDTVRAKFPQARLGQGYG  331 (536)
T ss_dssp             ------------------------------CGGGSCC--------TTCCEEEEESSCCCHHHHHHHHHHCTTSEEEEEEE
T ss_pred             ------------------------------ccccCCC--------ccceEEEECCCCCCHHHHHHHHHHCCCCCcccccc
Confidence                                          1111112        4899999999999999999999988 899999999


Q ss_pred             CCCCCCceeccc----CCCccccCccCCCccCeeEEeeecCCCCCCCCCCCCCceEEEccCCcccccCCCchhhhhcc-c
Q 006111          417 LTETCGPTTVCF----PDEMCMVGTAGPVSVYSELRLEEVPEMGYSPLDDPPCGEVCVRGKTLFSGYYKNPDLTRESI-I  491 (660)
Q Consensus       417 ~tE~~~~~~~~~----~~~~~~~~~~G~~~~~~~v~ivd~~~~~~~~~~~~~~Gei~v~g~~~~~gy~~~~~~~~~~~-~  491 (660)
                      +||++.+++.+.    .......+++|.|+++++++|+| ++++ .+++.|+.|||+|+||+++.||+++++.+.+.| .
T Consensus       332 ~TE~~~~~~~~~~~~~~~~~~~~~~~G~~~~~~~~~i~d-~~~~-~~~~~g~~GEl~v~g~~v~~GY~~~p~~t~~~~~~  409 (536)
T 3ni2_A          332 MTEAGPVLAMCLAFAKEPFDIKPGACGTVVRNAEMKIVD-PETG-ASLPRNQPGEICIRGDQIMKGYLNDPEATSRTIDK  409 (536)
T ss_dssp             CGGGSSEEEECGGGSSSCCCCCTTCCCEECSSCEEEEEC-TTTC-CBCCTTCCEEEEEESTTSCSEETTCHHHHHHHBCT
T ss_pred             ccccchhhhcccccCCccccCCCCCeeEeCCCcEEEEEe-CCCC-cCCCCCCccEEEEeCcccchhhcCChhHHHhhccC
Confidence            999998766542    12233458999999999999999 5433 345567899999999999999999999999999 7


Q ss_pred             CCccccCceEEECCCCcEEEEeccCCeeEcCCCeeecchhHHHHHhcCcCcceEEEEecCCC---CeEEEEEEcChhhHH
Q 006111          492 DGWFHTGDIGQILPNGVVKIIDRKKNLIKISQGEYVALEYLENVYCVAPIIEDIWVYGDSLK---SMLVAVVVPCEEDTK  568 (660)
Q Consensus       492 ~g~~~TGDl~~~~~~G~l~~~GR~~d~i~~~~G~~v~~~~iE~~l~~~p~V~~~~V~~~~~~---~~~~a~v~~~~~~~~  568 (660)
                      +|||+|||+|++|+||+++++||.||+||+ +|++|+|.+||++|.+||+|.+|+|++.+++   +.++|+|+..++.  
T Consensus       410 ~g~~~TGDl~~~~~dG~l~~~GR~dd~ik~-~G~~v~p~eIE~~l~~~p~V~~a~Vv~~~~~~~g~~~~a~vv~~~~~--  486 (536)
T 3ni2_A          410 EGWLHTGDIGYIDDDDELFIVDRLKELIKY-KGFQVAPAELEALLIAHPEISDAAVVGLKDEDAGEVPVAFVVKSEKS--  486 (536)
T ss_dssp             TSCEEEEEEEEECTTSCEEEEEECSCCEEE-TTEEECHHHHHHHHHTSTTEEEEEEEEEEETTTEEEEEEEEEECTTC--
T ss_pred             CCceEcccEEEEcCCceEEEEecccceEEE-CCEEECHHHHHHHHHhCCCcceEEEEeeecCCCCceeEEEEEecCCC--
Confidence            999999999999999999999999999998 8999999999999999999999999986544   4789999987643  


Q ss_pred             HHHHHCCCCCcHHHHhccHHHHHHHHHHHHHHHHhCCCCCceeeeEEEEecCCCCCCCCccccccccchHHHHHHHHH
Q 006111          569 KWAYSNGHAGSFLELCSLVQLQNYILSELKNAAERNKLRGFEHIKGVILDPRPFDMERDLVTATLKKKRNKLLIYYQV  646 (660)
Q Consensus       569 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~l~~~~~p~~i~~~~~~~~~~~~P~t~~GKv~R~~l~~~~~~  646 (660)
                            ..        .        .++|+++++ .+||.|++|+.|+++      +.+|+|++||++|++|+++|.+
T Consensus       487 ------~~--------~--------~~~l~~~l~-~~l~~~~~p~~i~~v------~~lP~t~~GKi~R~~L~~~~~~  535 (536)
T 3ni2_A          487 ------QA--------T--------EDEIKQYIS-KQVIFYKRIKRVFFI------EAIPKAPSGKILRKNLKEKLAG  535 (536)
T ss_dssp             ------CC--------C--------HHHHHHHHH-TTSCGGGCCSEEEEC------SCCCBCTTSCBCHHHHHTC---
T ss_pred             ------CC--------C--------HHHHHHHHH-HhccCCccccEEEEE------ecCCCCCCCCeeHHHHHHHhcc
Confidence                  00        1        134455554 789999999999987      4469999999999999988754

>3etc_A AMP-binding protein; adenylate-forming acyl-COA synthetase ligase, ligase; HET: PGE 1PE EPE; 2.10A {Methanosarcina acetivorans}

Probab=100.00  E-value=2.6e-74  Score=638.55  Aligned_cols=511  Identities=17%  Similarity=0.155  Sum_probs=402.1

Q ss_pred             CCCCCCcHHHHHHHHHHhCCCCCceeeeccccCCCCCceEEeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEeCCchhHHH
Q 006111           37 VDSDLNTAWDIFSMSVQKYPGNRMLGWRPFVDGKFGPYVWKTYKEVYEEVLQIVSALRASGAEPGCRVGIYGANCPQWVE  116 (660)
Q Consensus        37 ~~~~~~ti~~~l~~~a~~~pd~~a~~~~~~~d~~~~~~~~~Ty~ql~~~v~~lA~~L~~~Gl~~gd~V~l~~~n~~e~~~  116 (660)
                      .|..++.+.++|+.+|+++||++|+++.   +. .+..+++||+||.++++++|++|++.|+++||+|+++++|++++++
T Consensus        51 ~~~~~n~~~~~l~~~a~~~pd~~Al~~~---~~-~g~~~~~Ty~eL~~~~~~~A~~L~~~Gv~~Gd~V~l~~~~~~e~~~  126 (580)
T 3etc_A           51 VPENFNFAYDVVDVYARDSPEKLAMIWC---DD-YGNEKIFTFKDLKYYSDKAANFFVKHGIGKGDYVMLTLKSRYDFWY  126 (580)
T ss_dssp             CCSSCCHHHHTHHHHHHHCTTCEEEEEE---ES-SSCEEEEEHHHHHHHHHHHHHHHHHTTCCTTCEEEEECTTCTHHHH
T ss_pred             CcccchHHHHHHHHHHhhCCCCEEEEEE---cC-CCCEeEEeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEcCCCHHHHH
Confidence            3456788889999999999999999986   43 2345799999999999999999999999999999999999999999


Q ss_pred             HHHHHHhCCCeEEecCCCCChhHHHHHHhcccceEEEEccchh--hhhhccccccccCc-cEEEEecCCcHHHHHHHhhC
Q 006111          117 AMEACNALSLICVPLYDTLGPGAVNFILDHAEIDFVFVQDKKV--KELLSPDCRSAQRL-RVMVCFTSLTAEQKEMAVQT  193 (660)
Q Consensus       117 ~~lA~~~~G~~~vpl~~~~~~~~l~~~l~~~~~~~ii~~~~~~--~~~~~~~~~~~~~~-~~i~~~~~~~~~~~~~~~~~  193 (660)
                      ++|||+++|++++|+++.++.+++..+++.++++++|++.+..  ..+.+.. ...+.+ ..++.++...          
T Consensus       127 ~~lA~~~~Gav~vpl~~~~~~~~l~~~l~~~~~~~ii~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~----------  195 (580)
T 3etc_A          127 CMLGLHKLGAIAVPATHMLKTRDIVYRIEKAGLKMIVCIAEDDVPEQVDEAH-AECGDIPLKKAKVGGDV----------  195 (580)
T ss_dssp             HHHHHHHHTCEEEECCTTCCHHHHHHHHHHHTCCEEEEESSTTHHHHHHHHH-HHHCSCCCEEEEESSSC----------
T ss_pred             HHHHHHhCCEEEEeCCccCCHHHHHHHHHhcCCCEEEEecchhHHHHHHHHh-hhCCCcceEEEEeCCcc----------
Confidence            9999999999999999999999999999999999999987654  3222211 122222 3344443221          


Q ss_pred             CcceeeHHHHHhcCccCCccC---CCCCCCceEEEEecCCCCCCCceeeecchhHHHHhhhhhhhcccccCCCCCCcEEE
Q 006111          194 GIKPYSWDEFLHLGKVNEMEI---LPPQPFNICTIMYTSGTSGDPKGVVLTHETIATFVSGVDLFLDQFEDKMTVDDVYL  270 (660)
Q Consensus       194 ~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~i~~TSGTTG~pK~v~~th~~l~~~~~~~~~~~~~~~~~~~~~~~~l  270 (660)
                      ...+.++.+............   ....++|+++|+|||||||.||+|.++|.+++..+......+     ++..+++++
T Consensus       196 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~a~i~~TSGTTG~PKgV~~~~~~~~~~~~~~~~~~-----~~~~~~~~~  270 (580)
T 3etc_A          196 LEGWIDFRKELEESSPIFERPTGEVSTKNEDICLVYFSSGTAGFPKMVEHDNTYPLGHILTAKYWQ-----NVEDDGLHY  270 (580)
T ss_dssp             CTTCEEHHHHHHHSCSCCCCCCGGGSCCTTSEEEEEEECCSSSSCEEEEEETTHHHHHHHHHHTTS-----CCCTTCEEE
T ss_pred             ccccccHHHHHhhCCcccccCccccCCCCCCcEEEEEeCCCCCCccEEEeccHHHHHHHHHHHHhh-----CCCCCceEE
Confidence            123456666665443222111   246789999999999999999999999999888776655544     788999999


Q ss_pred             EecChhHHHHHHH-HHHHhhcCcEEEEec---CChhhHHHHhhhhcCeEEEechHHHHHHHHHHHHHHHhhchHHHHHHH
Q 006111          271 SFLPLAHILDRVI-EEYFFRRGASVGYYH---GDLNALRDDLMELKPTLLAGVPRVFEKIHEGIKKALEELRPLRRRIFD  346 (660)
Q Consensus       271 ~~~pl~~~~g~~~-~l~~l~~G~~~v~~~---~~~~~~~~~i~~~~~t~~~~~p~~~~~l~~~~~~~~~~~~~~~~~~~~  346 (660)
                      +..|+.|..+... ++.++..|+++++.+   +++..+++.|+++++|+++++|++++.|.+..                
T Consensus       271 ~~~~~~~~~~~~~~~~~~l~~G~~~~~~~~~~~~~~~~~~~i~~~~vt~~~~~P~~~~~l~~~~----------------  334 (580)
T 3etc_A          271 TVADSGWGKCVWGKLYGQWIAGCAVFVYDYDRFEAKNMLEKASKYGVTTFCAPPTIYRFLIKED----------------  334 (580)
T ss_dssp             ECCCTTSTHHHHHTTHHHHHTTCEEEEEECSSCCHHHHHHHHHHHTCCEEEECHHHHHHHHTSC----------------
T ss_pred             EeCChHHHHHHHHHHHHHHhCCcEEEEecCCCCCHHHHHHHHHHHCCeEEEccHHHHHHHHhcc----------------
Confidence            9999999888775 677799999998874   28999999999999999999999999886420                


Q ss_pred             HHHHHHHHHHhhCCCCCCcchhhhHHHHHHHHHHhCCcEeEEEEccCCCCHHHHHHHHHhcCCceeeecCCCCCCCceec
Q 006111          347 ALYKYKLAWMNMGYKQREASPLADLLAFRKVKARLGGRLRLVISGGAPLSTEVEEFLRVTCCAFLVQGYGLTETCGPTTV  426 (660)
Q Consensus       347 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lr~i~~~G~~l~~~~~~~~~~~~~~~v~~~YG~tE~~~~~~~  426 (660)
                                            ....        ..++||.+++||+++++++.++|.+.+|+++++.||+||++..++.
T Consensus       335 ----------------------~~~~--------~l~~lr~i~~gGe~l~~~~~~~~~~~~g~~i~~~YG~TE~~~~~~~  384 (580)
T 3etc_A          335 ----------------------LSHY--------NFSTLKYAVVAGEPLNPEVFNRFLEFTGIKLMEGFGQTETVVTIAT  384 (580)
T ss_dssp             ----------------------C-----------CCTTCCEEEECSSCCCHHHHHHHHHHHSCCCEEEECCTTSSCCEEC
T ss_pred             ----------------------cccC--------CCccceEEEEccCCCCHHHHHHHHHHhCCeEecccccccccceeec
Confidence                                  0111        1248999999999999999999999899999999999999877666


Q ss_pred             ccCCCccccCccCCCccCeeEEeeecCCCCCCCCCCCCCceEEEcc-----CCcccccCCCchhhhhcccCCccccCceE
Q 006111          427 CFPDEMCMVGTAGPVSVYSELRLEEVPEMGYSPLDDPPCGEVCVRG-----KTLFSGYYKNPDLTRESIIDGWFHTGDIG  501 (660)
Q Consensus       427 ~~~~~~~~~~~~G~~~~~~~v~ivd~~~~~~~~~~~~~~Gei~v~g-----~~~~~gy~~~~~~~~~~~~~g~~~TGDl~  501 (660)
                      .+.. ....+++|+|+++++++|+| +++..  ++.|+.|||+|+|     ++++.||+++++.+.+.|.+|||+|||+|
T Consensus       385 ~~~~-~~~~~~~G~p~~~~~v~ivd-~~g~~--~~~g~~GEl~v~~~~g~~~~~~~gY~~~p~~t~~~f~~gwy~TGDlg  460 (580)
T 3etc_A          385 FPWM-EPKPGSIGKPTPGYKIELMD-RDGRL--CEVGEEGEIVINTMEGKPVGLFVHYGKDPERTEETWHDGYYHTGDMA  460 (580)
T ss_dssp             CTTS-CCCTTCCBEECTTCEEEEEC-TTSCB--CCTTCCEEEEEECTTCCCTTCCCEETTCHHHHHHHEETTEEEEEEEE
T ss_pred             CCCC-CCCCCccccCCCCCEEEEEC-CCCCC--CCCCCceEEEEecCCCCCCeeeccccCCHhHHHhhcCCCEEecCcEE
Confidence            5443 33458999999999999999 77654  4556899999997     78999999999999999999999999999


Q ss_pred             EECCCCcEEEEeccCCeeEcCCCeeecchhHHHHHhcCcCcceEEEEecCCC---CeEEEEEEcChhhHHHHHHHCCCCC
Q 006111          502 QILPNGVVKIIDRKKNLIKISQGEYVALEYLENVYCVAPIIEDIWVYGDSLK---SMLVAVVVPCEEDTKKWAYSNGHAG  578 (660)
Q Consensus       502 ~~~~~G~l~~~GR~~d~i~~~~G~~v~~~~iE~~l~~~p~V~~~~V~~~~~~---~~~~a~v~~~~~~~~~~~~~~~~~~  578 (660)
                      ++|+||+|+++||.||+||+ +|++|+|.+||++|.+||+|.+|+|++.+++   +.++|+|++.++..           
T Consensus       461 ~~d~dG~l~~~GR~dd~Ik~-~G~~I~p~eIE~~l~~~p~V~~a~Vvg~~~~~~g~~~~a~vv~~~~~~-----------  528 (580)
T 3etc_A          461 WMDEDGYLWFVGRADDIIKT-SGYKVGPFEVESALIQHPAVLECAITGVPDPVRGQVIKATIVLTKDYT-----------  528 (580)
T ss_dssp             EECTTSCEEEEEESSSCEEE-TTEEECHHHHHHHHTTSTTEEEEEEEEEEETTTEEEEEEEEEECTTCC-----------
T ss_pred             EECCCCcEEEEecCCCEEEE-CCEEECHHHHHHHHHhCCCeeeEEEEeeeccCCCcEEEEEEEECCCCC-----------
Confidence            99999999999999999997 6999999999999999999999999997655   48889999887631           


Q ss_pred             cHHHHhccHHHHHHHHHHHHHHHHhCCCCCceeeeEEEEecCCCCCCCCccccccccchHHHHHHHHH
Q 006111          579 SFLELCSLVQLQNYILSELKNAAERNKLRGFEHIKGVILDPRPFDMERDLVTATLKKKRNKLLIYYQV  646 (660)
Q Consensus       579 ~~~~~~~~~~~~~~~~~~l~~~~~~~~l~~~~~p~~i~~~~~~~~~~~~P~t~~GKv~R~~l~~~~~~  646 (660)
                            ....    +.++|+++++ ..||.|++|+.|++++      .+|+|++||++|++|++++++
T Consensus       529 ------~~~~----~~~~l~~~l~-~~l~~~~~P~~i~~v~------~lP~t~sGKi~R~~Lr~~~~~  579 (580)
T 3etc_A          529 ------PSDS----LKNELQDHVK-NVTAPYKYPRIIEFVP------ELPKTISGKIRRVEIRDKDQS  579 (580)
T ss_dssp             ------CCHH----HHHHHHHHHH-HHSCGGGCCSEEEEEC------C--------------------
T ss_pred             ------CCHH----HHHHHHHHHH-hhCCCccCCeEEEEeC------CCCCCCCcCCcHHHHHhHhhc
Confidence                  1122    3345555554 6799999999999974      468999999999999998865

>3r44_A Fatty acyl COA synthetase FADD13 (fatty-acyl-COA synthetase); ligase; HET: HIS; 1.80A {Mycobacterium tuberculosis} PDB: 3t5c_A 3t5b_A

Probab=100.00  E-value=2.8e-74  Score=631.02  Aligned_cols=499  Identities=23%  Similarity=0.305  Sum_probs=407.8

Q ss_pred             CCCCCcHHHHHHHHHHhCCCCCceeeeccccCCCCCceEEeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEeCCchhHHHH
Q 006111           38 DSDLNTAWDIFSMSVQKYPGNRMLGWRPFVDGKFGPYVWKTYKEVYEEVLQIVSALRASGAEPGCRVGIYGANCPQWVEA  117 (660)
Q Consensus        38 ~~~~~ti~~~l~~~a~~~pd~~a~~~~~~~d~~~~~~~~~Ty~ql~~~v~~lA~~L~~~Gl~~gd~V~l~~~n~~e~~~~  117 (660)
                      .....|+.++|+++++++|+++|+++.   +.    .+++||+||.++++++|++|++.|+++||+|+++++|+++++++
T Consensus        12 ~~~~~~l~~~l~~~a~~~p~~~A~~~~---~~----~~~~Ty~eL~~~~~~lA~~L~~~Gv~~gd~V~i~~~~~~~~~~~   84 (517)
T 3r44_A           12 DDKMKNIGWMLRQRATVSPRLQAYVEP---ST----DVRMTYAQMNALANRCADVLTALGIAKGDRVALLMPNSVEFCCL   84 (517)
T ss_dssp             CGGGGCHHHHHHHHHHHSTTSEEEEEG---GG----TEEEEHHHHHHHHHHHHHHHHHTTCCTTCEEEEECCSSHHHHHH
T ss_pred             cccccCHHHHHHHHHHhCCCCeEEEeC---Cc----CceeeHHHHHHHHHHHHHHHHHcCCCCcCEEEEEcCCCHHHHHH
Confidence            345789999999999999999999876   32    15899999999999999999999999999999999999999999


Q ss_pred             HHHHHhCCCeEEecCCCCChhHHHHHHhcccceEEEEccchhhhhhccccccccCccEEEEecCCcHHHHHHHhhCCcce
Q 006111          118 MEACNALSLICVPLYDTLGPGAVNFILDHAEIDFVFVQDKKVKELLSPDCRSAQRLRVMVCFTSLTAEQKEMAVQTGIKP  197 (660)
Q Consensus       118 ~lA~~~~G~~~vpl~~~~~~~~l~~~l~~~~~~~ii~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~  197 (660)
                      +|||+++|++++|+++.++.+++..++++++++++|++......+..... .......++.....               
T Consensus        85 ~lA~~~~G~~~vpl~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~~-~~~~~~~~~~~~~~---------------  148 (517)
T 3r44_A           85 FYGAAKLGAVAVPINTRLAAPEVSFILSDSGSKVVIYGAPSAPVIDAIRA-QADPPGTVTDWIGA---------------  148 (517)
T ss_dssp             HHHHHHHTCEEEECCTTSCHHHHHHHHHHHTCSEEEECGGGHHHHHHHHH-SSSCCTTCCEEEEH---------------
T ss_pred             HHHHHHhCcEEEecCcccCHHHHHHHHHhcCceEEEECCchHHHHHHHHh-ccCCccEEEEccCc---------------
Confidence            99999999999999999999999999999999999999876654432211 11111111111100               


Q ss_pred             eeHHHHHhcCccCCccCCCCCCCceEEEEecCCCCCCCceeeecchhHHHHhhhhhhhcccccCCCCCCcEEEEecChhH
Q 006111          198 YSWDEFLHLGKVNEMEILPPQPFNICTIMYTSGTSGDPKGVVLTHETIATFVSGVDLFLDQFEDKMTVDDVYLSFLPLAH  277 (660)
Q Consensus       198 ~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~TSGTTG~pK~v~~th~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~pl~~  277 (660)
                      ..+.+..... ....+.....++++++|+|||||||.||+|++||+++.+.+......+     ++..++++++.+|++|
T Consensus       149 ~~~~~~~~~~-~~~~~~~~~~~~d~a~i~~TSGTTG~PKgV~~sh~~l~~~~~~~~~~~-----~~~~~d~~l~~~p~~~  222 (517)
T 3r44_A          149 DSLAERLRSA-AADEPAVECGGDDNLFIMYTSGTTGHPKGVVHTHESVHSAASSWASTI-----DVRYRDRLLLPLPMFH  222 (517)
T ss_dssp             HHHHHHHHHC-CCCCCCCCCCTTSEEEEEEECC---CCEEEEEEHHHHHHHHHHHHHHS-----CCCTTCEEEECSCTTS
T ss_pred             ccHHHHhhcc-CcCCCCCCCCCCCeEEEEECCcccccCceeeeeHHHHHHHHHHHHHhc-----CCCCCCEEEEeCchHH
Confidence            1223333222 122334456789999999999999999999999999999998887777     8899999999999999


Q ss_pred             HHHHHHHHHHhhcCcEEEEecC-ChhhHHHHhhhhcCeEEEechHHHHHHHHHHHHHHHhhchHHHHHHHHHHHHHHHHH
Q 006111          278 ILDRVIEEYFFRRGASVGYYHG-DLNALRDDLMELKPTLLAGVPRVFEKIHEGIKKALEELRPLRRRIFDALYKYKLAWM  356 (660)
Q Consensus       278 ~~g~~~~l~~l~~G~~~v~~~~-~~~~~~~~i~~~~~t~~~~~p~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  356 (660)
                      .+++...+.++..|+++++.+. ++..+++.|.++++|+++++|+++..|.+.....                       
T Consensus       223 ~~~~~~~~~~~~~G~~~v~~~~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~-----------------------  279 (517)
T 3r44_A          223 VAALTTVIFSAMRGVTLISMPQFDATKVWSLIVEERVCIGGAVPAILNFMRQVPEFA-----------------------  279 (517)
T ss_dssp             HHHHHHHHHHHHHTCEEEECSSCCHHHHHHHHHHTTCCEEEECHHHHHHHHHSHHHH-----------------------
T ss_pred             HHHHHHHHHHHhcCeEEEEeCCCCHHHHHHHHHHhCCeEEEeHHHHHHHHHhCcccc-----------------------
Confidence            9999876666559999998876 9999999999999999999999999886532211                       


Q ss_pred             hhCCCCCCcchhhhHHHHHHHHHHhCCcEeEEEEccCCCCHHHHHHHHHhcCCceeeecCCCCCCCceecccCCC-cccc
Q 006111          357 NMGYKQREASPLADLLAFRKVKARLGGRLRLVISGGAPLSTEVEEFLRVTCCAFLVQGYGLTETCGPTTVCFPDE-MCMV  435 (660)
Q Consensus       357 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~lr~i~~~G~~l~~~~~~~~~~~~~~~v~~~YG~tE~~~~~~~~~~~~-~~~~  435 (660)
                                            ....+++|.+++||+++++++.+.+.+. ++++++.||+||+++.++...... ....
T Consensus       280 ----------------------~~~~~~lr~i~~gGe~l~~~~~~~~~~~-~~~~~~~YG~TE~~~~~~~~~~~~~~~~~  336 (517)
T 3r44_A          280 ----------------------ELDAPDFRYFITGGAPMPEALIKIYAAK-NIEVVQGYALTESCGGGTLLLSEDALRKA  336 (517)
T ss_dssp             ----------------------HCCCTTCCEEEECSSCCCHHHHHHHHHT-TCEEEEEEECGGGTTCEEEECGGGTTTTT
T ss_pred             ----------------------cCCCCcccEEEECCCCCCHHHHHHHHhc-CCcEEEeecccccccceeecCCccccccC
Confidence                                  1112589999999999999999999887 999999999999998776654432 4455


Q ss_pred             CccCCCccCeeEEeeecCCCCCCCCCCCCCceEEEccCCcccccCCCchhhhhcccCCccccCceEEECCCCcEEEEecc
Q 006111          436 GTAGPVSVYSELRLEEVPEMGYSPLDDPPCGEVCVRGKTLFSGYYKNPDLTRESIIDGWFHTGDIGQILPNGVVKIIDRK  515 (660)
Q Consensus       436 ~~~G~~~~~~~v~ivd~~~~~~~~~~~~~~Gei~v~g~~~~~gy~~~~~~~~~~~~~g~~~TGDl~~~~~~G~l~~~GR~  515 (660)
                      +++|+|+++++++++| +++...+.  + .|||+|+||+++.||+++++.+.+.|.+|||+|||+|++|+||+|+++||.
T Consensus       337 ~~~G~~~~~~~~~i~d-~~~~~~~~--g-~GEl~v~g~~v~~GY~~~p~~t~~~f~~g~~~TGDl~~~~~dG~l~~~GR~  412 (517)
T 3r44_A          337 GSAGRATMFTDVAVRG-DDGVIREH--G-EGEVVIKSDILLKEYWNRPEATRDAFDNGWFRTGDIGEIDDEGYLYIKDRL  412 (517)
T ss_dssp             TCCBEECTTEEEEEEC-TTSCEESS--E-EEEEEEEETTSCSEETTCHHHHHHTEETTEEEEEEEEEECTTSCEEEEECG
T ss_pred             CCCCcCCCCeEEEEEC-CCCCCCCC--C-CeEEEEeCcchhhhhCCChhhhHhhhcCCCEecceeEEEcCCeeEEEecCC
Confidence            8999999999999999 66654333  3 799999999999999999999999999999999999999999999999999


Q ss_pred             CCeeEcCCCeeecchhHHHHHhcCcCcceEEEEecCCC---CeEEEEEEcChhhHHHHHHHCCCCCcHHHHhccHHHHHH
Q 006111          516 KNLIKISQGEYVALEYLENVYCVAPIIEDIWVYGDSLK---SMLVAVVVPCEEDTKKWAYSNGHAGSFLELCSLVQLQNY  592 (660)
Q Consensus       516 ~d~i~~~~G~~v~~~~iE~~l~~~p~V~~~~V~~~~~~---~~~~a~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  592 (660)
                      ||+||+ +|++|+|.+||++|.+||+|.+|+|++.+++   +.++++|+.....         .        .       
T Consensus       413 dd~ik~-~G~~v~p~eIE~~l~~~p~V~~~~Vv~~~~~~~g~~~~a~v~~~~~~---------~--------~-------  467 (517)
T 3r44_A          413 KDMIIS-GGENVYPAEIESVIIGVPGVSEVAVIGLPDEKWGEIAAAIVVADQNE---------V--------S-------  467 (517)
T ss_dssp             GGCEEE-TTEEECHHHHHHHHTTSTTEEEEEEEEEEETTTEEEEEEEEEECTTT---------C--------C-------
T ss_pred             cCEEEE-CCEEECHHHHHHHHHhCCCEeEEEEEeccccccCceEEEEEECCCCC---------C--------C-------
Confidence            999997 8999999999999999999999999987654   3566666433221         0        1       


Q ss_pred             HHHHHHHHHHhCCCCCceeeeEEEEecCCCCCCCCccccccccchHHHHHHHHHHH
Q 006111          593 ILSELKNAAERNKLRGFEHIKGVILDPRPFDMERDLVTATLKKKRNKLLIYYQVEI  648 (660)
Q Consensus       593 ~~~~l~~~~~~~~l~~~~~p~~i~~~~~~~~~~~~P~t~~GKv~R~~l~~~~~~~i  648 (660)
                       .++|+++++ ..||.|++|+.|+++      +.+|+|++||++|++|+++|.+++
T Consensus       468 -~~~l~~~l~-~~L~~~~~P~~i~~v------~~lP~t~~GKi~R~~L~~~~~~~~  515 (517)
T 3r44_A          468 -EQQIVEYCG-TRLARYKLPKKVIFA------EAIPRNPTGKILKTVLREQYSATV  515 (517)
T ss_dssp             -HHHHHHHHH-HHSCGGGSCSEEEEC------SCCCBCTTCCBCHHHHHHHHGGGC
T ss_pred             -HHHHHHHHH-HhCCCCCCCCEEEEE------CCCCCCCCcCccHHHHHHHHHhhc
Confidence             133444444 679999999999987      446999999999999999997654

>1v25_A Long-chain-fatty-acid-COA synthetase; ligase, structural genomics, riken structural genomics/proteomics initiative, RSGI; HET: ANP; 2.30A {Thermus thermophilus} SCOP: e.23.1.1 PDB: 1ult_A* 1v26_A*

Probab=100.00  E-value=1.1e-74  Score=637.82  Aligned_cols=504  Identities=24%  Similarity=0.289  Sum_probs=385.5

Q ss_pred             CCcHHHHHHHHHHhCCCCCceeeeccccCCCCCceEEeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEeCCchhHHHHHHH
Q 006111           41 LNTAWDIFSMSVQKYPGNRMLGWRPFVDGKFGPYVWKTYKEVYEEVLQIVSALRASGAEPGCRVGIYGANCPQWVEAMEA  120 (660)
Q Consensus        41 ~~ti~~~l~~~a~~~pd~~a~~~~~~~d~~~~~~~~~Ty~ql~~~v~~lA~~L~~~Gl~~gd~V~l~~~n~~e~~~~~lA  120 (660)
                      ..++.++|+++++++||++|+++.   ++  +..+++||+||.++++++|++|++.|+++||+|+++++|++++++++||
T Consensus        17 ~~~l~~~l~~~a~~~p~~~a~~~~---~~--~~~~~~Ty~el~~~~~~lA~~L~~~Gv~~gd~V~i~~~n~~e~~~~~lA   91 (541)
T 1v25_A           17 ELNLWDFLERAAALFGRKEVVSRL---HT--GEVHRTTYAEVYQRARRLMGGLRALGVGVGDRVATLGFNHFRHLEAYFA   91 (541)
T ss_dssp             CCCTHHHHHHHHHHSTTCEEEEEC---TT--SCEEEEEHHHHHHHHHHHHHHHHHTTCCTTCEEEEECCSSHHHHHHHHH
T ss_pred             CCCHHHHHHHHHHhCCCceEEEEe---cC--CCCceecHHHHHHHHHHHHHHHHHcCCCCCCEEEEEcCCcHHHHHHHHH
Confidence            368999999999999999999864   21  2237899999999999999999999999999999999999999999999


Q ss_pred             HHhCCCeEEecCCCCChhHHHHHHhcccceEEEEccchhhhhhccccccccCccEEEEecCCcHHHHHHHhhCCcceeeH
Q 006111          121 CNALSLICVPLYDTLGPGAVNFILDHAEIDFVFVQDKKVKELLSPDCRSAQRLRVMVCFTSLTAEQKEMAVQTGIKPYSW  200 (660)
Q Consensus       121 ~~~~G~~~vpl~~~~~~~~l~~~l~~~~~~~ii~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~  200 (660)
                      |+++|++++|+++.++.+++.++|+.++++++|++......+.... ...+....++.++....          ....++
T Consensus        92 ~~~~Gav~vpl~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~----------~~~~~~  160 (541)
T 1v25_A           92 VPGMGAVLHTANPRLSPKEIAYILNHAEDKVLLFDPNLLPLVEAIR-GELKTVQHFVVMDEKAP----------EGYLAY  160 (541)
T ss_dssp             HHHTTCEEEECCTTSCHHHHHHHHHHHTCSEEEECGGGHHHHHHHG-GGCSSCCEEEESSSCCC----------TTCEEH
T ss_pred             HHhcCcEEEecCcccCHHHHHHHHHhCCCcEEEEChhHHHHHHHHH-hhCCCccEEEEecCCCC----------cccccH
Confidence            9999999999999999999999999999999999987665443322 22334455666554221          023355


Q ss_pred             HHHHhcCccCCccCCCCCCCceEEEEecCCCCCCCceeeecchhHHHHhhhh--hhhcccccCCCCCCcEEEEecChhHH
Q 006111          201 DEFLHLGKVNEMEILPPQPFNICTIMYTSGTSGDPKGVVLTHETIATFVSGV--DLFLDQFEDKMTVDDVYLSFLPLAHI  278 (660)
Q Consensus       201 ~~~~~~~~~~~~~~~~~~~~~~~~i~~TSGTTG~pK~v~~th~~l~~~~~~~--~~~~~~~~~~~~~~~~~l~~~pl~~~  278 (660)
                      .++......    .....++++++|+|||||||.||+|++||+++.......  ...+     ++..+|++++.+|++|.
T Consensus       161 ~~~~~~~~~----~~~~~~~~~a~i~~TSGTTG~PKgV~~sh~~l~~~~~~~~~~~~~-----~~~~~d~~l~~~p~~h~  231 (541)
T 1v25_A          161 EEALGEEAD----PVRVPERAACGMAYTTGTTGLPKGVVYSHRALVLHSLAASLVDGT-----ALSEKDVVLPVVPMFHV  231 (541)
T ss_dssp             HHHCCSCCC----CCCCCTTSEEEEEEECSSSSSCEEEEEEHHHHHHHHHHTTSTTTT-----CCCTTCEEEECSCTTSH
T ss_pred             HHHhhccCC----cccCCCCCcEEEEECCCCCCCCcEeeeehHHHHHHHhhhhhcccc-----cCCCCCEEEEeccchhh
Confidence            555433211    134567899999999999999999999999998766542  2233     67889999999999999


Q ss_pred             HHHHHHHHHhhcCcEEEEecC--ChhhHHHHhhhhcCeEEEechHHHHHHHHHHHHHHHhhchHHHHHHHHHHHHHHHHH
Q 006111          279 LDRVIEEYFFRRGASVGYYHG--DLNALRDDLMELKPTLLAGVPRVFEKIHEGIKKALEELRPLRRRIFDALYKYKLAWM  356 (660)
Q Consensus       279 ~g~~~~l~~l~~G~~~v~~~~--~~~~~~~~i~~~~~t~~~~~p~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  356 (660)
                      +++...+.+++.|+++++.+.  ++..+++.|+++++|+++++|+++..|.+......                      
T Consensus       232 ~~~~~~~~~l~~G~~~v~~~~~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~----------------------  289 (541)
T 1v25_A          232 NAWCLPYAATLVGAKQVLPGPRLDPASLVELFDGEGVTFTAGVPTVWLALADYLESTG----------------------  289 (541)
T ss_dssp             HHHTHHHHHHHHTCEEEECTTCCSHHHHHHHHHHTTCCEEEECHHHHHHHHHHHHHHT----------------------
T ss_pred             hHHHHHHHHHhcCceEEeeCCCCCHHHHHHHHHhcCeeEEecchHHHHHHHhhhhccC----------------------
Confidence            998777888999999999864  89999999999999999999999999876433211                      


Q ss_pred             hhCCCCCCcchhhhHHHHHHHHHHhCCcEeEEEEccCCCCHHHHHHHHHhcCCceeeecCCCCCCCceecccCCC-----
Q 006111          357 NMGYKQREASPLADLLAFRKVKARLGGRLRLVISGGAPLSTEVEEFLRVTCCAFLVQGYGLTETCGPTTVCFPDE-----  431 (660)
Q Consensus       357 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~lr~i~~~G~~l~~~~~~~~~~~~~~~v~~~YG~tE~~~~~~~~~~~~-----  431 (660)
                                             ...++||.+++||+++++++.+.+ +.+|+++++.||+||++.+++......     
T Consensus       290 -----------------------~~l~~lr~i~~gG~~l~~~~~~~~-~~~g~~~~~~YG~TE~~~~~~~~~~~~~~~~~  345 (541)
T 1v25_A          290 -----------------------HRLKTLRRLVVGGSAAPRSLIARF-ERMGVEVRQGYGLTETSPVVVQNFVKSHLESL  345 (541)
T ss_dssp             -----------------------CCCSSCCEEEECSSCCCHHHHHHH-HHTTCEEEEEEECGGGSSEEEECCCCGGGTTS
T ss_pred             -----------------------CcchhccEEEECCCCCCHHHHHHH-HHhCCceeecccccccccceeccccccccccc
Confidence                                   011489999999999999999999 567999999999999998777654331     


Q ss_pred             -----ccccCccCCCccCeeEEeeecCCCCCCCCCCCCCceEEEccCCcccccCCCchhhhhcc-cCCccccCceEEECC
Q 006111          432 -----MCMVGTAGPVSVYSELRLEEVPEMGYSPLDDPPCGEVCVRGKTLFSGYYKNPDLTRESI-IDGWFHTGDIGQILP  505 (660)
Q Consensus       432 -----~~~~~~~G~~~~~~~v~ivd~~~~~~~~~~~~~~Gei~v~g~~~~~gy~~~~~~~~~~~-~~g~~~TGDl~~~~~  505 (660)
                           ....+++|+|+++++++|+| +++..++.+.++.|||+|+||+++.||+++++.+.+.| .+|||+|||+|++|+
T Consensus       346 ~~~~~~~~~~~~G~p~~~~~~~i~d-~~g~~~~~~~~~~GEl~v~g~~v~~GY~~~p~~t~~~f~~~g~~~TGDlg~~d~  424 (541)
T 1v25_A          346 SEEEKLTLKAKTGLPIPLVRLRVAD-EEGRPVPKDGKALGEVQLKGPWITGGYYGNEEATRSALTPDGFFRTGDIAVWDE  424 (541)
T ss_dssp             CHHHHHHHHTSCBEECTTCEEEEEC-TTSCBCCSSSCCCEEEEEESTTSBSSCBTCHHHHHTTBCTTSCEEEEEEEEECT
T ss_pred             CccccccccCCCCCcCCCcEEEEEC-CCCCCCCCCCCcceEEEEeCcchhccccCChhhhhhhccCCCCeEcCCEEEEcC
Confidence                 12347899999999999999 77776665445789999999999999999999999999 499999999999999


Q ss_pred             CCcEEEEeccCCeeEcCCCeeecchhHHHHHhcCcCcceEEEEecCCC---CeEEEEEEcChhhHHHHHHHCCCCCcHHH
Q 006111          506 NGVVKIIDRKKNLIKISQGEYVALEYLENVYCVAPIIEDIWVYGDSLK---SMLVAVVVPCEEDTKKWAYSNGHAGSFLE  582 (660)
Q Consensus       506 ~G~l~~~GR~~d~i~~~~G~~v~~~~iE~~l~~~p~V~~~~V~~~~~~---~~~~a~v~~~~~~~~~~~~~~~~~~~~~~  582 (660)
                      ||+|+++||.||+||+ +|++|+|.+||++|.+||+|.+|+|++.+++   +.++|+|++....         .      
T Consensus       425 dG~l~~~GR~~d~ik~-~G~~v~p~eIE~~l~~~p~V~~a~Vv~~~~~~~~~~~~a~vv~~~~~---------~------  488 (541)
T 1v25_A          425 EGYVEIKDRLKDLIKS-GGEWISSVDLENALMGHPKVKEAAVVAIPHPKWQERPLAVVVPRGEK---------P------  488 (541)
T ss_dssp             TCCEEEEEESSCEEEE-TTEEEEHHHHHCC----------CEEEEECSSSSEEEEECC----------------------
T ss_pred             CceEEEeecccceeee-CCEEECHHHHHHHHHhCCCceEEEEEEecCCCcCceEEEEEEECCCC---------C------
Confidence            9999999999999996 8999999999999999999999999997654   4788888876211         0      


Q ss_pred             HhccHHHHHHHHHHHHHHHHhCCCCCceeeeEEEEecCCCCCCCCccccccccchHHHHHHHHHHH
Q 006111          583 LCSLVQLQNYILSELKNAAERNKLRGFEHIKGVILDPRPFDMERDLVTATLKKKRNKLLIYYQVEI  648 (660)
Q Consensus       583 ~~~~~~~~~~~~~~l~~~~~~~~l~~~~~p~~i~~~~~~~~~~~~P~t~~GKv~R~~l~~~~~~~i  648 (660)
                        .        .+++++++++..||.|++|+.|++++      .+|+|++||++|++|+++|.+.+
T Consensus       489 --~--------~~~l~~~~~~~~L~~~~~P~~i~~v~------~lP~t~~GKi~r~~L~~~~~~~~  538 (541)
T 1v25_A          489 --T--------PEELNEHLLKAGFAKWQLPDAYVFAE------EIPRTSAGKFLKRALREQYKNYY  538 (541)
T ss_dssp             ----------------------CCCTTTSCSBC--------------------CCTTHHHHSTTSS
T ss_pred             --C--------HHHHHHHHHhccCccccCCcEEEEeC------CCCCCCccCeeHHHHHHHHHHhh
Confidence              1        12334444423899999999999874      46899999999999999876543

>3o83_A Peptide arylation enzyme; ligase, adenylation of 2,3-dihydroxybenzoate and transfer to pantetheine cofactor of BASF; HET: IXN; 1.90A {Acinetobacter baumannii} SCOP: e.23.1.0 PDB: 3o82_A* 3o84_A* 3u16_A* 3u17_A*

Probab=100.00  E-value=2.2e-74  Score=635.97  Aligned_cols=500  Identities=15%  Similarity=0.151  Sum_probs=334.8

Q ss_pred             CCcHHHHHHHHHHhCCCCCceeeeccccCCCCCceEEeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEeCCchhHHHHHHH
Q 006111           41 LNTAWDIFSMSVQKYPGNRMLGWRPFVDGKFGPYVWKTYKEVYEEVLQIVSALRASGAEPGCRVGIYGANCPQWVEAMEA  120 (660)
Q Consensus        41 ~~ti~~~l~~~a~~~pd~~a~~~~~~~d~~~~~~~~~Ty~ql~~~v~~lA~~L~~~Gl~~gd~V~l~~~n~~e~~~~~lA  120 (660)
                      ..|+.++|+++++++||++|+++.   +      +++||+||.++++++|++|++.|+++||+|+++++|++++++++||
T Consensus        29 ~~tl~~~l~~~a~~~p~~~Al~~~---~------~~~Ty~eL~~~~~~lA~~L~~~Gv~~gd~V~i~~~n~~~~~~~~lA   99 (544)
T 3o83_A           29 DQPLTRILTVGVQSHPHSLAIICG---E------RQLSYIELDRLSTNLATRLAEKGLGKGDTALVQLPNVAEFYIVFFA   99 (544)
T ss_dssp             CCCTTHHHHHHHHHCTTSEEEEET---T------EEEEHHHHHHHHHHHHHHHHHTTCCTTCEEEECCCSSHHHHHHHHH
T ss_pred             CCCHHHHHHHHHHhCCCceEEEcC---C------CceeHHHHHHHHHHHHHHHHHCCCCCCCEEEEECCCCHHHHHHHHH
Confidence            478999999999999999999875   3      6899999999999999999999999999999999999999999999


Q ss_pred             HHhCCCeEEecCCCCChhHHHHHHhcccceEEEEccchhh----hhhccccccccCccEEEEecCCcHHHHHHHhhCCcc
Q 006111          121 CNALSLICVPLYDTLGPGAVNFILDHAEIDFVFVQDKKVK----ELLSPDCRSAQRLRVMVCFTSLTAEQKEMAVQTGIK  196 (660)
Q Consensus       121 ~~~~G~~~vpl~~~~~~~~l~~~l~~~~~~~ii~~~~~~~----~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~  196 (660)
                      |+++|++++|+++.++.+++.++++.++++++|++.....    ...............++..+....            
T Consensus       100 ~~~~Gav~vpl~~~~~~~~l~~~l~~~~~~~li~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------------  167 (544)
T 3o83_A          100 LLKAGVVVLNALYSHRQYELNAFIKQIQPKLLIGSRQHEVFSNNQFIDSLHDVNLSPEIILMLNHQAT------------  167 (544)
T ss_dssp             HHHHTCEEEECCTTCCHHHHHHHHHHHCCSEEEEETTSGGGSSSHHHHHHHHTTCCCSEEEEETCCTT------------
T ss_pred             HHHhCcEEecCCCCCCHHHHHHHHHhcCeeEEEEccccccccHHHHHHHHhhcccCcceEEEecCCcc------------
Confidence            9999999999999999999999999999999999876531    111111122234445555543211            


Q ss_pred             eeeHHHHHhcCccCCccCCCCCCCceEEEEecCCCCCCCceeeecchhHHHHhhhhhhhcccccCCCCCCcEEEEecChh
Q 006111          197 PYSWDEFLHLGKVNEMEILPPQPFNICTIMYTSGTSGDPKGVVLTHETIATFVSGVDLFLDQFEDKMTVDDVYLSFLPLA  276 (660)
Q Consensus       197 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~TSGTTG~pK~v~~th~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~pl~  276 (660)
                      ...+.++...............++++++|+|||||||.||+|+++|+++.+.+......+     ++..++++++++|++
T Consensus       168 ~~~~~~~~~~~~~~~~~~~~~~~~d~a~i~~TSGTTG~PKgv~~sh~~~~~~~~~~~~~~-----~~~~~d~~l~~~p~~  242 (544)
T 3o83_A          168 DFGLLDWIETPAETFVDFSSTPADEVAFFQLSGGSTGTPKLIPRTHNDYDYSVRASAEIC-----GLNSNTRLLCALPAP  242 (544)
T ss_dssp             SEEHHHHHHSCCSSCCCCCCCCTTSEEEEEECCC--CCCCEEEEEHHHHHHHHHHHHHHT-----TCCTTCEEEECSCTT
T ss_pred             ccchhhhhhcccccccccccCCccceEEEEECCCcccCCceEEechHHHHHHHHHHHHHh-----CCCCCCeEEEecCcc
Confidence            123444444332222233456789999999999999999999999999999998887777     889999999999999


Q ss_pred             HHHHHHH--HHHHhhcCcEEEEecC-ChhhHHHHhhhhcCeEEEechHHHHHHHHHHHHHHHhhchHHHHHHHHHHHHHH
Q 006111          277 HILDRVI--EEYFFRRGASVGYYHG-DLNALRDDLMELKPTLLAGVPRVFEKIHEGIKKALEELRPLRRRIFDALYKYKL  353 (660)
Q Consensus       277 ~~~g~~~--~l~~l~~G~~~v~~~~-~~~~~~~~i~~~~~t~~~~~p~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~  353 (660)
                      |.+++..  .+.++..|+++++.+. ++..+++.|+++++|+++++|+++..+++......                   
T Consensus       243 h~~~~~~~~~~~~l~~G~~~v~~~~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~-------------------  303 (544)
T 3o83_A          243 HNFMLSSPGALGVLHAGGCVVMAPNPEPLNCFSIIQRHQVNMASLVPSAVIMWLEKAAQYK-------------------  303 (544)
T ss_dssp             SHHHHHSSHHHHHHHTTCEEEECSSCCHHHHHHHHHHHTCCEEEECHHHHHHHHHHHTTTH-------------------
T ss_pred             eEeecchHHHHHHHHcCCEEEECCCCCHHHHHHHHHHHCCCEEEechHHHHHHHhchhhcc-------------------
Confidence            9999875  6778999999999876 99999999999999999999999999876432111                   


Q ss_pred             HHHhhCCCCCCcchhhhHHHHHHHHHHhCCcEeEEEEccCCCCHHHHHHHHHhcCCceeeecCCCCCCCceecccCCCcc
Q 006111          354 AWMNMGYKQREASPLADLLAFRKVKARLGGRLRLVISGGAPLSTEVEEFLRVTCCAFLVQGYGLTETCGPTTVCFPDEMC  433 (660)
Q Consensus       354 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lr~i~~~G~~l~~~~~~~~~~~~~~~v~~~YG~tE~~~~~~~~~~~~~~  433 (660)
                                        .++        ++||.+++||+++++++.+.+.+.+|+++++.||+||++..++........
T Consensus       304 ------------------~~~--------~~lr~i~~gG~~l~~~~~~~~~~~~~~~~~~~YG~TE~~~~~~~~~~~~~~  357 (544)
T 3o83_A          304 ------------------DQI--------QSLKLLQVGGASFPESLARQVPEVLNCKLQQVFGMAEGLVNYTRLDDSDEQ  357 (544)
T ss_dssp             ------------------HHH--------TTCCEEEEESSCCCHHHHTHHHHHHCSEEEEEEECTTSCEEECCTTSCHHH
T ss_pred             ------------------ccC--------CcceEEEEcCCCCCHHHHHHHHHHhCCcEEeeeccccccceeecCCCchhh
Confidence                              111        489999999999999999999999999999999999998655544433334


Q ss_pred             ccCccCCCc-cCeeEEeeecCCCCCCCCCCCCCceEEEccCCcccccCCCchhhhhcc-cCCccccCceEEECCCCcEEE
Q 006111          434 MVGTAGPVS-VYSELRLEEVPEMGYSPLDDPPCGEVCVRGKTLFSGYYKNPDLTRESI-IDGWFHTGDIGQILPNGVVKI  511 (660)
Q Consensus       434 ~~~~~G~~~-~~~~v~ivd~~~~~~~~~~~~~~Gei~v~g~~~~~gy~~~~~~~~~~~-~~g~~~TGDl~~~~~~G~l~~  511 (660)
                      ...++|.|+ ++++++|+| +++..  ++.|+.|||+|+||+++.||+++++.+.+.| .+|||+|||+|++|+||.|++
T Consensus       358 ~~~~~G~p~~~~~~~~i~d-~~~~~--~~~g~~GEl~v~g~~v~~GY~~~~~~t~~~f~~~g~~~TGDlg~~~~dG~l~~  434 (544)
T 3o83_A          358 IFTTQGRPISSDDEIKIVD-EQYRE--VPEGEIGMLATRGPYTFCGYYQSPEHNSQVFDEDNYYYSGDLVQRTPDGNLRV  434 (544)
T ss_dssp             HHHCCCEESCTTCEEEEEC-TTSCB--CCTTCCEEEEEECTTSCSCCTTCHHHHHHHBCTTCCEEEEEEEEECTTSCEEE
T ss_pred             ccCCCceecCCCcEEEEEC-CCCCC--CCCCCeeEEEEecCCcchhhcCChhhhhhhCCCCCCeEcCCEEEEcCCCCEEE
Confidence            457899996 899999999 76664  4556899999999999999999999999999 799999999999999999999


Q ss_pred             EeccCCeeEcCCCeeecchhHHHHHhcCcCcceEEEEecCCC---CeEEEEEEcChhhHHHHHHHCCCCCcHHHHhccHH
Q 006111          512 IDRKKNLIKISQGEYVALEYLENVYCVAPIIEDIWVYGDSLK---SMLVAVVVPCEEDTKKWAYSNGHAGSFLELCSLVQ  588 (660)
Q Consensus       512 ~GR~~d~i~~~~G~~v~~~~iE~~l~~~p~V~~~~V~~~~~~---~~~~a~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~  588 (660)
                      +||.||+||+ +|++|+|.+||++|.+||+|.+|+|++.+++   +.++|+|+..+...                 .   
T Consensus       435 ~GR~dd~ik~-~G~~v~p~eIE~~l~~~p~V~~a~vv~~~~~~~g~~~~a~vv~~~~~~-----------------~---  493 (544)
T 3o83_A          435 VGRIKDQINR-GGEKIASEEIEKLILLHPEVMHAALVAIVDEQFGEKSCAFIVSRNPEL-----------------K---  493 (544)
T ss_dssp             EEEEC---------------------------------------------------------------------------
T ss_pred             EeecCCEEEe-CCEEECHHHHHHHHHhCCCccEEEEEeccCCCCCceEEEEEEeCCCCC-----------------C---
Confidence            9999999996 8999999999999999999999999987654   47888888765320                 0   


Q ss_pred             HHHHHHHHHHHHHHhCCCCCceeeeEEEEecCCCCCCCCccccccccchHHHHHHHHH
Q 006111          589 LQNYILSELKNAAERNKLRGFEHIKGVILDPRPFDMERDLVTATLKKKRNKLLIYYQV  646 (660)
Q Consensus       589 ~~~~~~~~l~~~~~~~~l~~~~~p~~i~~~~~~~~~~~~P~t~~GKv~R~~l~~~~~~  646 (660)
                           .+++++++++..||.|++|+.|+++      +.+|+|++||++|++|++++..
T Consensus       494 -----~~~l~~~~~~~~l~~~~~P~~i~~v------~~lP~t~~GKi~r~~L~~~~~~  540 (544)
T 3o83_A          494 -----AVVLRRHLMELGIAQYKLPDQIKLI------ESLPLTAVGKVDKKQLRSILNT  540 (544)
T ss_dssp             ----------------------------------------------------------
T ss_pred             -----HHHHHHHHHhCCCCcccCCcEEEEe------ccCCCCCCCCCcHHHHHHHHhh
Confidence                 1233444443379999999999987      4469999999999999998865

>1t5h_X 4-chlorobenzoyl COA ligase; adenylate-forming coenzyme A ligase domain alternation confo change; 2.00A {Alcaligenes SP} SCOP: e.23.1.1 PDB: 1t5d_X 3cw9_A* 3cw8_X* 2qvz_X* 2qw0_X* 3dlp_X* 2qvx_X* 2qvy_X*

Probab=100.00  E-value=2.3e-73  Score=622.54  Aligned_cols=488  Identities=21%  Similarity=0.248  Sum_probs=398.0

Q ss_pred             CCcHHHHHHHHHHhCCCCCceeeeccccCCCCCceEEeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEeCCchhHHHHHHH
Q 006111           41 LNTAWDIFSMSVQKYPGNRMLGWRPFVDGKFGPYVWKTYKEVYEEVLQIVSALRASGAEPGCRVGIYGANCPQWVEAMEA  120 (660)
Q Consensus        41 ~~ti~~~l~~~a~~~pd~~a~~~~~~~d~~~~~~~~~Ty~ql~~~v~~lA~~L~~~Gl~~gd~V~l~~~n~~e~~~~~lA  120 (660)
                      |+|+.++|+++++++||++|+.+.   +..    +++||+||.++++++|++|++.|+++||+|+++++|++++++++||
T Consensus         1 M~tl~~~l~~~a~~~p~~~a~~~~---~~~----~~~Ty~el~~~~~~~A~~L~~~Gv~~gd~V~i~~~~~~~~~~~~lA   73 (504)
T 1t5h_X            1 MQTVNEMLRRAATRAPDHCALAVP---ARG----LRLTHAELRARVEAVAARLHADGLRPQQRVAVVAPNSADVVIAILA   73 (504)
T ss_dssp             CCCHHHHHHHHHHHCTTSEEEEET---TTT----EEEEHHHHHHHHHHHHHHHHHTTCCTTCEEEEECCSCHHHHHHHHH
T ss_pred             CCcHHHHHHHHHHhCCCceEEEEc---CCC----ceeEHHHHHHHHHHHHHHHHHcCCCCCCEEEEEcCCCHHHHHHHHH
Confidence            689999999999999999999864   321    6899999999999999999999999999999999999999999999


Q ss_pred             HHhCCCeEEecCCCCChhHHHHHHhcccceEEEE--ccchhhhhhccccccccCccEEEEecCCcHHHHHHHhhCCccee
Q 006111          121 CNALSLICVPLYDTLGPGAVNFILDHAEIDFVFV--QDKKVKELLSPDCRSAQRLRVMVCFTSLTAEQKEMAVQTGIKPY  198 (660)
Q Consensus       121 ~~~~G~~~vpl~~~~~~~~l~~~l~~~~~~~ii~--~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~  198 (660)
                      |+++|++++|+++.++.+++.+++++++++++|+  +......+....    .... ++                     
T Consensus        74 ~~~~G~~~vpl~~~~~~~~l~~~l~~~~~~~~i~~~~~~~~~~~~~~~----~~~~-~~---------------------  127 (504)
T 1t5h_X           74 LHRLGAVPALLNPRLKSAELAELIKRGEMTAAVIAVGRQVADAIFQSG----SGAR-II---------------------  127 (504)
T ss_dssp             HHHHTCEEEEECTTSCHHHHHHHHHHTTCSEEEECC--CHHHHHHHHC----CCCE-EE---------------------
T ss_pred             HHHhCcEEEecCCccChHHHHHHHhhcCCcEEEEecchhhhhhhhhcc----ccce-eE---------------------
Confidence            9999999999999999999999999999999999  665443331111    1111 11                     


Q ss_pred             eHHHHHhcCc----cCCccCCCCCCCceEEEEecCCCCCCCceeeecchhHHHHhhhhhhhcccccCCC--CCCcEEEEe
Q 006111          199 SWDEFLHLGK----VNEMEILPPQPFNICTIMYTSGTSGDPKGVVLTHETIATFVSGVDLFLDQFEDKM--TVDDVYLSF  272 (660)
Q Consensus       199 ~~~~~~~~~~----~~~~~~~~~~~~~~~~i~~TSGTTG~pK~v~~th~~l~~~~~~~~~~~~~~~~~~--~~~~~~l~~  272 (660)
                      .+.++.....    ..........++++++|+|||||||.||+|++||+++.+.+..+...+     ++  ..++++++.
T Consensus       128 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~i~~TSGTTG~PKgV~~sh~~~~~~~~~~~~~~-----~~~~~~~~~~l~~  202 (504)
T 1t5h_X          128 FLGDLVRDGEPYSYGPPIEDPQREPAQPAFIFYTSGTTGLPKAAIIPQRAAESRVLFMSTQV-----GLRHGRHNVVLGL  202 (504)
T ss_dssp             EGGGTEETTEECCCSCCCCCCCCCTTSEEEEEECCC---CCCEEEEEGGGHHHHHHHHHHTT-----CCCSSTTCEEEEC
T ss_pred             EecchhhcCcccccCCccCCCCCCCCCeEEEEeCCCCCCCCCEEEecHHHHHHHHHHHHHhh-----CCCCCCCceEEee
Confidence            1222221110    111112345689999999999999999999999999998888776655     56  788999999


Q ss_pred             cChhHHHHHHH-HHHHhhcCcEEEEecC-ChhhHHHHhhhhcCeEEEechHHHHHHHHHHHHHHHhhchHHHHHHHHHHH
Q 006111          273 LPLAHILDRVI-EEYFFRRGASVGYYHG-DLNALRDDLMELKPTLLAGVPRVFEKIHEGIKKALEELRPLRRRIFDALYK  350 (660)
Q Consensus       273 ~pl~~~~g~~~-~l~~l~~G~~~v~~~~-~~~~~~~~i~~~~~t~~~~~p~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~  350 (660)
                      +|++|.+++.. .+.+++.|+++++.+. ++..+++.|+++++|+++++|+++..|.+.....                 
T Consensus       203 ~p~~~~~g~~~~~~~~l~~G~~~v~~~~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~-----------------  265 (504)
T 1t5h_X          203 MPLYHVVGFFAVLVAALALDGTYVVVEEFRPVDALQLVQQEQVTSLFATPTHLDALAAAAAHA-----------------  265 (504)
T ss_dssp             SCTTSHHHHTTTHHHHHHTTCEEEECSSCCHHHHHHHHHHHTCCEEECCHHHHHHHHHHHCCT-----------------
T ss_pred             cchhhcchHHHHHHHHHHcCceEEeCCCCCHHHHHHHHHHhCCeEEEeChHHHHHHHhhhccc-----------------
Confidence            99999999854 6788999999999876 8999999999999999999999999987532100                 


Q ss_pred             HHHHHHhhCCCCCCcchhhhHHHHHHHHHHhCCcEeEEEEccCCCCHHHHHHHHHhcCCceeeecCCCCCCCceecccCC
Q 006111          351 YKLAWMNMGYKQREASPLADLLAFRKVKARLGGRLRLVISGGAPLSTEVEEFLRVTCCAFLVQGYGLTETCGPTTVCFPD  430 (660)
Q Consensus       351 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lr~i~~~G~~l~~~~~~~~~~~~~~~v~~~YG~tE~~~~~~~~~~~  430 (660)
                                        ....        ..++||.+++||+++++++.+.+++.++..+++.||+||++. +....  
T Consensus       266 ------------------~~~~--------~l~~lr~~~~gG~~l~~~~~~~~~~~~~~~~~~~YG~TE~~~-~~~~~--  316 (504)
T 1t5h_X          266 ------------------GSSL--------KLDSLRHVTFAGATMPDAVLETVHQHLPGEKVNIYGTTEAMN-SLYMR--  316 (504)
T ss_dssp             ------------------TCCC--------CCTTCCEEEECCTTCCHHHHHHHHHHCCSEEEEEEEETTTEE-EEEEE--
T ss_pred             ------------------cccc--------cCccccEEEEcCCcCCHHHHHHHHHhcCcceeeeeccccccc-ccccc--
Confidence                              0000        114899999999999999999999999999999999999943 22222  


Q ss_pred             CccccCccCCCccCeeEEeeecCCC-CCCCCCCCCCceEEEc-cCCcccccCCCchhhhhcccCCccccCceEEECCCCc
Q 006111          431 EMCMVGTAGPVSVYSELRLEEVPEM-GYSPLDDPPCGEVCVR-GKTLFSGYYKNPDLTRESIIDGWFHTGDIGQILPNGV  508 (660)
Q Consensus       431 ~~~~~~~~G~~~~~~~v~ivd~~~~-~~~~~~~~~~Gei~v~-g~~~~~gy~~~~~~~~~~~~~g~~~TGDl~~~~~~G~  508 (660)
                       ....+++|.|.+++++++++ +++ ...+++.|+.|||+|+ |+.++.||+++++.+.+.|.+|||+|||+|++|+||+
T Consensus       317 -~~~~~~~g~p~~~~~~~i~~-~~~~~~~~~~~g~~GEl~v~gg~~~~~GY~~~~~~t~~~f~~g~~~TGDlg~~~~dG~  394 (504)
T 1t5h_X          317 -QPKTGTEMAPGFFSEVRIVR-IGGGVDEIVANGEEGELIVAASDSAFVGYLNQPQATAEKLQDGWYRTSDVAVWTPEGT  394 (504)
T ss_dssp             -SCSSSSEEBCCTTCCEEEEC-TTSCTTCBCCTTCCEEEEEECCTTSCCCBTTCHHHHHHHEETTEEEEEEEEEECTTSC
T ss_pred             -CCCCCccccCCCCCceeEEe-ccCCCCCcCCCCCcceEEEeCCceeeceecCCchhhhhhhcCCccccCcEEEECCCce
Confidence             22347899999999999999 544 2245566789999999 9999999999999999999999999999999999999


Q ss_pred             EEEEeccCCeeEcCCCeeecchhHHHHHhcCcCcceEEEEecCCC---CeEEEEEEcChhhHHHHHHHCCCCCcHHHHhc
Q 006111          509 VKIIDRKKNLIKISQGEYVALEYLENVYCVAPIIEDIWVYGDSLK---SMLVAVVVPCEEDTKKWAYSNGHAGSFLELCS  585 (660)
Q Consensus       509 l~~~GR~~d~i~~~~G~~v~~~~iE~~l~~~p~V~~~~V~~~~~~---~~~~a~v~~~~~~~~~~~~~~~~~~~~~~~~~  585 (660)
                      |+++||.||+||+ +|++|+|.+||++|.+||+|.+|+|++.+++   +.++|+|++.++.        ..        +
T Consensus       395 l~~~GR~dd~ik~-~G~~v~p~eIE~~l~~~p~V~~a~Vv~~~~~~~g~~~~a~vv~~~~~--------~~--------~  457 (504)
T 1t5h_X          395 VRILGRVDDMIIS-GGENIHPSEIERVLGTAPGVTEVVVIGLADQRWGQSVTACVVPRLGE--------TL--------S  457 (504)
T ss_dssp             EEEEEEGGGCEEE-TTEEECHHHHHHHHTTSTTEEEEEEEEEECSSSSEEEEEEEEECTTC--------CC--------C
T ss_pred             EEEeCcccCEEEE-CCEEECHHHHHHHHHhCCCcceEEEEEeecCCCCcEEEEEEEecCCc--------Cc--------C
Confidence            9999999999997 8999999999999999999999999997654   4899999987652        00        1


Q ss_pred             cHHHHHHHHHHHHHHHHhCCCCCceeeeEEEEecCCCCCCCCccccccccchHHHHHHHH
Q 006111          586 LVQLQNYILSELKNAAERNKLRGFEHIKGVILDPRPFDMERDLVTATLKKKRNKLLIYYQ  645 (660)
Q Consensus       586 ~~~~~~~~~~~l~~~~~~~~l~~~~~p~~i~~~~~~~~~~~~P~t~~GKv~R~~l~~~~~  645 (660)
                              .++|++++++.+||.|++|+.|++++      .+|+|++||++|++|+++|+
T Consensus       458 --------~~~l~~~~~~~~L~~~~~P~~i~~v~------~lP~t~~GKi~r~~L~~~~~  503 (504)
T 1t5h_X          458 --------ADALDTFCRSSELADFKRPKRYFILD------QLPKNALNKVLRRQLVQQVS  503 (504)
T ss_dssp             --------HHHHHHHHHTSSCCGGGSCSEEEECS------CCCBCTTSCBCHHHHHHHHC
T ss_pred             --------HHHHHHHHhhccCcccccceEEEEhh------hCCCCCCCCEeHHHHHHHhc
Confidence                    23455555533899999999999974      46999999999999998874

>3rix_A Luciferase, luciferin 4-monooxygenase; oxidoreductase, photoprotein, luminescence, aspulvinone, natural product extracts; HET: 923; 1.70A {Photinus pyralis} SCOP: e.23.1.1 PDB: 1ba3_A 1lci_A* 4e5d_A* 3ies_A* 3iep_A* 3ier_A* 4g36_A* 4g37_A* 3qya_A

Probab=100.00  E-value=2.6e-74  Score=636.53  Aligned_cols=524  Identities=24%  Similarity=0.274  Sum_probs=336.3

Q ss_pred             CCCCCCCCCCCcHHHHHHHHHHhCCCCCceeeeccccCCCCCceEEeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEeCCc
Q 006111           32 NGFPSVDSDLNTAWDIFSMSVQKYPGNRMLGWRPFVDGKFGPYVWKTYKEVYEEVLQIVSALRASGAEPGCRVGIYGANC  111 (660)
Q Consensus        32 ~~~~~~~~~~~ti~~~l~~~a~~~pd~~a~~~~~~~d~~~~~~~~~Ty~ql~~~v~~lA~~L~~~Gl~~gd~V~l~~~n~  111 (660)
                      ++.|..+....|+.++|.++++++|+++|++...  ++.+  .+++||+||.++++++|++|++.|+++||+|+++++|+
T Consensus        10 ~~~~~~~~~~~tl~~~l~~~a~~~p~~~a~~a~~--~~~~--~~~~Ty~el~~~~~~lA~~L~~~Gv~~gd~V~i~~~n~   85 (550)
T 3rix_A           10 GPAPFYPLEDGTAGEQLHKAMKRYALVPGTIAFT--DAHI--EVNITYAEYFEMSVRLAEAMKRYGLNTNHRIVVCSENS   85 (550)
T ss_dssp             CCCCSSCCCCSCHHHHHHHHHHHHHTSTTCEEEE--ETTT--CCEEEHHHHHHHHHHHHHHHHHHTCCTTCEEEEECSSC
T ss_pred             CCCCCCCcccCCHHHHHHHHHHhCCCCceEEEee--ecCC--CcEeEHHHHHHHHHHHHHHHHHhCCCCCCEEEEEcCCc
Confidence            4446666777999999999999999999986220  2111  16899999999999999999999999999999999999


Q ss_pred             hhHHHHHHHHHhCCCeEEecCCCCChhHHHHHHhcccceEEEEccchhhhhhccccccccCccEEEEecCCcHHHHHHHh
Q 006111          112 PQWVEAMEACNALSLICVPLYDTLGPGAVNFILDHAEIDFVFVQDKKVKELLSPDCRSAQRLRVMVCFTSLTAEQKEMAV  191 (660)
Q Consensus       112 ~e~~~~~lA~~~~G~~~vpl~~~~~~~~l~~~l~~~~~~~ii~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~  191 (660)
                      +++++++|||+++|++++|+++.++.+++.++++.++++++|++......+.... ...+....++.++....       
T Consensus        86 ~e~~~~~lA~~~~Gav~vpl~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~-------  157 (550)
T 3rix_A           86 LQFFMPVLGALFIGVAVAPANDIYNERELLNSMNISQPTVVFVSKKGLQKILNVQ-KKLPIIQKIIIMDSKTD-------  157 (550)
T ss_dssp             TTTHHHHHHHHHHTCEEEECCTTCCHHHHHHHHHHHCCSEEEECGGGHHHHHHHH-HHCTTCCEEEETTCSSC-------
T ss_pred             ccHHHHHHHHHHcCCEEeecCCcCCHHHHHHHHHhcCCeEEEEcHHHHHHHHHHH-hhCCCcceEEEEcCCcc-------
Confidence            9999999999999999999999999999999999999999999998776554432 23344556666554321       


Q ss_pred             hCCcceeeHHHHHhcCccC------CccCCCCCCCceEEEEecCCCCCCCceeeecchhHHHHhhhhhhhcccccCCCCC
Q 006111          192 QTGIKPYSWDEFLHLGKVN------EMEILPPQPFNICTIMYTSGTSGDPKGVVLTHETIATFVSGVDLFLDQFEDKMTV  265 (660)
Q Consensus       192 ~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~~~~~i~~TSGTTG~pK~v~~th~~l~~~~~~~~~~~~~~~~~~~~  265 (660)
                        .....++.++.......      ..+.....++++++|+|||||||.||+|++||+++...+......+  ...++..
T Consensus       158 --~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~a~i~~TSGTTG~PKgV~~th~~~~~~~~~~~~~~--~~~~~~~  233 (550)
T 3rix_A          158 --YQGFQSMYTFVTSHLPPGFNEYDFVPESFDRDKTIALIMNSSGSTGLPKGVALPHRTACVRFSHARDPI--FGNQIIP  233 (550)
T ss_dssp             --BTTBCBHHHHHHHHCCTTCCTTTCCCCCCCTTTSEEEEEEC-----CCCEEEEEHHHHHHHHHHHTCTT--TSCCCCT
T ss_pred             --ccCcccHHHHhhccccccccccccCCCCCCCCCCEEEEEECCCcccCcchhhhhHHHHHHHHHHhhhhh--ccccCCC
Confidence              11234455555432211      1112223468899999999999999999999999988877655431  1126778


Q ss_pred             CcEEEEecChhHHHHHHHHHHHhhcCcEEEEecC-ChhhHHHHhhhhcCeEEEechHHHHHHHHHHHHHHHhhchHHHHH
Q 006111          266 DDVYLSFLPLAHILDRVIEEYFFRRGASVGYYHG-DLNALRDDLMELKPTLLAGVPRVFEKIHEGIKKALEELRPLRRRI  344 (660)
Q Consensus       266 ~~~~l~~~pl~~~~g~~~~l~~l~~G~~~v~~~~-~~~~~~~~i~~~~~t~~~~~p~~~~~l~~~~~~~~~~~~~~~~~~  344 (660)
                      ++++++.+|++|.+++...+.+++.|+++++.+. ++..+++.|+++++|+++++|+++..+.+..              
T Consensus       234 ~~~~l~~~p~~~~~g~~~~~~~l~~G~~~~~~~~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~--------------  299 (550)
T 3rix_A          234 DTAILSVVPFHHGFGMFTTLGYLICGFRVVLMYRFEEELFLRSLQDYKIQSALLVPTLFSFFAKST--------------  299 (550)
T ss_dssp             TCEEEECSCTTSHHHHHHHHHHHHHTCEEEECSSCCHHHHHHHHHHTTCSEEEECHHHHHHHHHCC--------------
T ss_pred             CcEEEEechHHHHHHHHHHHHHHHcCCEEEEeCCCCHHHHHHHHHHcCCeEEEeCcHHHHHHHhCc--------------
Confidence            9999999999999999888888999999999876 9999999999999999999999999886521              


Q ss_pred             HHHHHHHHHHHHhhCCCCCCcchhhhHHHHHHHHHHhCCcEeEEEEccCCCCHHHHHHHHHhcCCc-eeeecCCCCCCCc
Q 006111          345 FDALYKYKLAWMNMGYKQREASPLADLLAFRKVKARLGGRLRLVISGGAPLSTEVEEFLRVTCCAF-LVQGYGLTETCGP  423 (660)
Q Consensus       345 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lr~i~~~G~~l~~~~~~~~~~~~~~~-v~~~YG~tE~~~~  423 (660)
                                             ..+..++        ++||.+++||+++++++.+.+.+.++.. +++.||+||+++.
T Consensus       300 -----------------------~~~~~~l--------~~lr~i~~gG~~l~~~~~~~~~~~~~~~~v~~~YG~TE~~~~  348 (550)
T 3rix_A          300 -----------------------LIDKYDL--------SNLHEIASGGAPLSKEVGEAVAKRFHLPGIRQGYGLTETTSA  348 (550)
T ss_dssp             -----------------------GGGGSCC--------TTCCEEEECSSCCCHHHHHHHHHHTTCSCCEEEEECGGGSSE
T ss_pred             -----------------------cccccCc--------ccccEEEEecCCCCHHHHHHHHHHcCCCccccccCcCccccc
Confidence                                   1111122        4899999999999999999999999875 9999999999988


Q ss_pred             eecccCCCccccCccCCCccCeeEEeeecCCCCCCCCCCCCCceEEEccCCcccccCCCchhhhhcc-cCCccccCceEE
Q 006111          424 TTVCFPDEMCMVGTAGPVSVYSELRLEEVPEMGYSPLDDPPCGEVCVRGKTLFSGYYKNPDLTRESI-IDGWFHTGDIGQ  502 (660)
Q Consensus       424 ~~~~~~~~~~~~~~~G~~~~~~~v~ivd~~~~~~~~~~~~~~Gei~v~g~~~~~gy~~~~~~~~~~~-~~g~~~TGDl~~  502 (660)
                      ++....... ..+++|+|+++++++|+| ++++ .+++.|+.|||+|+||+++.||+++++.+.+.| .+|||+|||+|+
T Consensus       349 ~~~~~~~~~-~~~~vG~~~~~~~~~i~d-~~~~-~~~~~g~~GEl~v~g~~v~~GY~~~~~~t~~~~~~~g~~~TGDl~~  425 (550)
T 3rix_A          349 ILITPEGDD-KPGAVGKVVPFFEAKVVD-LDTG-KTLGVNQRGELCVRGPMIMSGYVNNPEATNALIDKDGWLHSGDIAY  425 (550)
T ss_dssp             EEECCTTCC-CTTEEEEECTTCEEEEEC-TTTC-CBCCTTCCEEEEEESTTSCSEETTCHHHHHHHBCTTSCEEEEEEEE
T ss_pred             eecCCCCCC-CCCCcccccCCcEEEEEe-CCCC-cCCCCCCCeEEEEeCCCcchhhcCChhhhhhhcCCCCCeecCcEEE
Confidence            777665443 448999999999999999 5433 455667899999999999999999999999999 899999999999


Q ss_pred             ECCCCcEEEEeccCCeeEcCCCeeecchhHHHHHhcCcCcceEEEEecCCC---CeEEEEEEcChhhHHHHHHHCCCCCc
Q 006111          503 ILPNGVVKIIDRKKNLIKISQGEYVALEYLENVYCVAPIIEDIWVYGDSLK---SMLVAVVVPCEEDTKKWAYSNGHAGS  579 (660)
Q Consensus       503 ~~~~G~l~~~GR~~d~i~~~~G~~v~~~~iE~~l~~~p~V~~~~V~~~~~~---~~~~a~v~~~~~~~~~~~~~~~~~~~  579 (660)
                      +|+||+++++||.||+||+ +|++|+|.+||++|.+||+|.+|+|++.+++   +.++|+|++.++..        .   
T Consensus       426 ~~~dG~l~~~GR~dd~ik~-~G~~v~p~eIE~~l~~~p~V~~a~vv~~~~~~~g~~~~a~vv~~~~~~--------~---  493 (550)
T 3rix_A          426 WDEDEHFFIVDRLKSLIKY-KGYQVAPAELESILLQHPNIFDAGVAGLPDDDAGELPAAVVVLEHGKT--------M---  493 (550)
T ss_dssp             ECTTCCEEEC----------------------------------------------------------------------
T ss_pred             EeCCceEEEEecchheeEE-CCEEECHHHHHHHHHhCCCcceEEEEEeecCCCCceEEEEEEecCCCC--------C---
Confidence            9999999999999999997 8999999999999999999999999987654   47888888876531        0   


Q ss_pred             HHHHhccHHHHHHHHHHHHHHHHhCCCCCceeee-EEEEecCCCCCCCCccccccccchHHHHHHHHHHHHHH
Q 006111          580 FLELCSLVQLQNYILSELKNAAERNKLRGFEHIK-GVILDPRPFDMERDLVTATLKKKRNKLLIYYQVEIDQL  651 (660)
Q Consensus       580 ~~~~~~~~~~~~~~~~~l~~~~~~~~l~~~~~p~-~i~~~~~~~~~~~~P~t~~GKv~R~~l~~~~~~~i~~~  651 (660)
                           .        .++|+++++ .+++.|..|. .|+++      +.+|+|++||++|++|++++.+..+.-
T Consensus       494 -----~--------~~~l~~~~~-~~l~~~~~~~~~i~~v------~~lP~t~~GKi~r~~L~~~~~~~~~~~  546 (550)
T 3rix_A          494 -----T--------EKEIVDYVA-SQVTTAKKLRGGVVFV------DEVPKGLTGKLDARKIREILIKAKKGG  546 (550)
T ss_dssp             -------------------------------------------------------------------------
T ss_pred             -----C--------HHHHHHHHH-HhcccccccCCceEEE------eecCCCCCcceeHHHHHHHHHhhcccc
Confidence                 1        123344443 5677776554 57765      456999999999999999998765543

>2d1s_A Luciferase, luciferin 4-monooxygenase; alpha/beta, beta barrel, alpha+beta, riken structural genomics/proteomics initiative, RSGI; HET: SLU; 1.30A {Luciola cruciata} PDB: 2d1q_A* 2d1r_A* 2d1t_A*

Probab=100.00  E-value=2.8e-73  Score=627.31  Aligned_cols=510  Identities=24%  Similarity=0.282  Sum_probs=411.7

Q ss_pred             CCcHHH-HHHHHHHhCCCCCceeeeccccCCCCCceEEeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEeCCchhHHHHHH
Q 006111           41 LNTAWD-IFSMSVQKYPGNRMLGWRPFVDGKFGPYVWKTYKEVYEEVLQIVSALRASGAEPGCRVGIYGANCPQWVEAME  119 (660)
Q Consensus        41 ~~ti~~-~l~~~a~~~pd~~a~~~~~~~d~~~~~~~~~Ty~ql~~~v~~lA~~L~~~Gl~~gd~V~l~~~n~~e~~~~~l  119 (660)
                      +.++.+ +|..+++++ |++|+++.   ++.    +++||+||.++++++|..|++.|+++||+|+++++|++++++++|
T Consensus        24 ~~~l~~~~l~~~~~~~-~~~A~~~~---~~~----~~~Ty~el~~~~~~lA~~L~~~Gv~~gd~V~i~~~n~~e~~~~~l   95 (548)
T 2d1s_A           24 SAGTQLRKYMERYAKL-GAIAFTNA---VTG----VDYSYAEYLEKSCCLGKALQNYGLVVDGRIALCSENCEEFFIPVI   95 (548)
T ss_dssp             CHHHHHHHHHHHHHHH-TCEEEEET---TTC----CEEEHHHHHHHHHHHHHHHHHHTCCTTCEEEEECSSCTTTHHHHH
T ss_pred             cCcHHHHHHHhhhccc-CCceEEEc---CCC----CEeeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEeCCchhHHHHHH
Confidence            468999 899999999 99999863   211    589999999999999999999999999999999999999999999


Q ss_pred             HHHhCCCeEEecCCCCChhHHHHHHhcccceEEEEccchhhhhhccccccccCccEEEEecCCcHHHHHHHhhCCcceee
Q 006111          120 ACNALSLICVPLYDTLGPGAVNFILDHAEIDFVFVQDKKVKELLSPDCRSAQRLRVMVCFTSLTAEQKEMAVQTGIKPYS  199 (660)
Q Consensus       120 A~~~~G~~~vpl~~~~~~~~l~~~l~~~~~~~ii~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~  199 (660)
                      ||+++|++++|+++.++.+++.++++.++++++|++......+.... ...+....++.++....         ......
T Consensus        96 a~~~~Gav~vpl~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~---------~~~~~~  165 (548)
T 2d1s_A           96 AGLFIGVGVAPTNEIYTLRELVHSLGISKPTIVFSSKKGLDKVITVQ-KTVTTIKTIVILDSKVD---------YRGYQC  165 (548)
T ss_dssp             HHHHHTCEEEEECTTSCHHHHHHHHHHHCCSEEEECTTTHHHHHHHH-HHSTTCCEEEETTCSSC---------BTTBCB
T ss_pred             HHHhhCCEEeccCCCCCHHHHHHHHHhcCCeEEEEcHHHHHHHHHHh-cCCCCCCEEEEeCCccc---------cccccc
Confidence            99999999999999999999999999999999999988765543321 11222334555443210         001234


Q ss_pred             HHHHHhcCccCCccCCCC------CCCceEEEEecCCCCCCCceeeecchhHHHHhhhhhhhcccccCCCCCCcEEEEec
Q 006111          200 WDEFLHLGKVNEMEILPP------QPFNICTIMYTSGTSGDPKGVVLTHETIATFVSGVDLFLDQFEDKMTVDDVYLSFL  273 (660)
Q Consensus       200 ~~~~~~~~~~~~~~~~~~------~~~~~~~i~~TSGTTG~pK~v~~th~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~  273 (660)
                      |.++.........+....      .++++++|+|||||||.||+|++||+++.+.+......+.  ..++..++++++.+
T Consensus       166 ~~~~~~~~~~~~~~~~~~~~~~~~~~~d~a~i~~TSGTTG~PKgv~~sh~~~~~~~~~~~~~~~--~~~~~~~d~~l~~~  243 (548)
T 2d1s_A          166 LDTFIKRNTPPGFQASSFKTVEVDRKEQVALIMNSSGSTGLPKGVQLTHENIVTRFSHARDPIY--GNQVSPGTAVLTVV  243 (548)
T ss_dssp             HHHHHHHTSCTTCCGGGCCCCCCCTTTCEEEEECCSSCSSSCCCEEEEHHHHHHHHHHHTCTTT--SCCCCTTCEEEECS
T ss_pred             HHHHHhcCccccCCcccccccccCCCCCEEEEEeCCCCCCCCCEEEecHHHHHHHHHHhhchhh--ccCCCccceEEEec
Confidence            556554331110111111      2389999999999999999999999999988877655410  12678899999999


Q ss_pred             ChhHHHHHHH-HHHHhhcCcEEEEecC-ChhhHHHHhhhhcCeEEEechHHHHHHHHHHHHHHHhhchHHHHHHHHHHHH
Q 006111          274 PLAHILDRVI-EEYFFRRGASVGYYHG-DLNALRDDLMELKPTLLAGVPRVFEKIHEGIKKALEELRPLRRRIFDALYKY  351 (660)
Q Consensus       274 pl~~~~g~~~-~l~~l~~G~~~v~~~~-~~~~~~~~i~~~~~t~~~~~p~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~  351 (660)
                      |++|.+++.. .+.++ .|+++++.+. ++..+++.|+++++|+++++|+++..|.+..                     
T Consensus       244 p~~h~~g~~~~~~~~l-~G~~~v~~~~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~---------------------  301 (548)
T 2d1s_A          244 PFHHGFGMFTTLGYLI-CGFRVVMLTKFDEETFLKTLQDYKCTSVILVPTLFAILNKSE---------------------  301 (548)
T ss_dssp             CTTSHHHHHHHHHHHH-TTCEEEECCCCCHHHHHHHHHHTTEEEEEECHHHHHHHHHCS---------------------
T ss_pred             cHHHHHHHHHHHHHHh-cCcEEEEcCCCCHHHHHHHHHHcCCcEEEecHHHHHHHHhCc---------------------
Confidence            9999999876 45556 9999998875 9999999999999999999999999886421                     


Q ss_pred             HHHHHhhCCCCCCcchhhhHHHHHHHHHHhCCcEeEEEEccCCCCHHHHHHHHHhc-CCceeeecCCCCCCCceecccCC
Q 006111          352 KLAWMNMGYKQREASPLADLLAFRKVKARLGGRLRLVISGGAPLSTEVEEFLRVTC-CAFLVQGYGLTETCGPTTVCFPD  430 (660)
Q Consensus       352 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lr~i~~~G~~l~~~~~~~~~~~~-~~~v~~~YG~tE~~~~~~~~~~~  430 (660)
                                      ..+..++        +++|.+++||+++++++.+.+.+.+ ++.+++.||+||++..++.....
T Consensus       302 ----------------~~~~~~l--------~~lr~i~~gG~~l~~~~~~~~~~~~~~~~i~~~YG~TE~~~~~~~~~~~  357 (548)
T 2d1s_A          302 ----------------LLNKYDL--------SNLVEIASGGAPLSKEVGEAVARRFNLPGVRQGYGLTETTSAIIITPEG  357 (548)
T ss_dssp             ----------------CGGGSCC--------TTCCEEEECSSCCCHHHHHHHHHHTTCSCCEEEEECGGGSSEEEECCTT
T ss_pred             ----------------ccccccc--------cceeEEEEcCccCCHHHHHHHHHHcCCCceeeccccccccceeeecCcc
Confidence                            0111111        4899999999999999999999988 68899999999999877664433


Q ss_pred             CccccCccCCCccCeeEEeeecCCCCCCCCCCCCCceEEEccCCcccccCCCchhhhhcc-cCCccccCceEEECCCCcE
Q 006111          431 EMCMVGTAGPVSVYSELRLEEVPEMGYSPLDDPPCGEVCVRGKTLFSGYYKNPDLTRESI-IDGWFHTGDIGQILPNGVV  509 (660)
Q Consensus       431 ~~~~~~~~G~~~~~~~v~ivd~~~~~~~~~~~~~~Gei~v~g~~~~~gy~~~~~~~~~~~-~~g~~~TGDl~~~~~~G~l  509 (660)
                       ....+++|+|+++++++|+| ++.+ .+++.|+.|||+|+||+++.||+++++.+.+.| .+|||+|||+|++|+||++
T Consensus       358 -~~~~~~~G~~~~~~~~~i~d-~~~~-~~~~~g~~GEl~v~g~~v~~GY~~~~~~t~~~f~~~g~~~TGDl~~~~~dG~l  434 (548)
T 2d1s_A          358 -DDKPGASGKVVPLFKAKVID-LDTK-KSLGPNRRGEVCVKGPMLMKGYVNNPEATKELIDEEGWLHTGDIGYYDEEKHF  434 (548)
T ss_dssp             -CCCTTCCBEECTTCEEEEEC-TTTC-CBCCTTCCEEEEEESTTSCSEETTCHHHHHHHBCTTSCEEEEEEEEECTTCCE
T ss_pred             -cCCCCCCCccCCCceEEEEe-CCcC-ccCCCCCCeEEEECCHHHhhhhcCChHHhhhcccCCcEEEccCEEEEcCCCeE
Confidence             23458999999999999999 4333 345567899999999999999999999999999 7999999999999999999


Q ss_pred             EEEeccCCeeEcCCCeeecchhHHHHHhcCcCcceEEEEecCCC---CeEEEEEEcChhhHHHHHHHCCCCCcHHHHhcc
Q 006111          510 KIIDRKKNLIKISQGEYVALEYLENVYCVAPIIEDIWVYGDSLK---SMLVAVVVPCEEDTKKWAYSNGHAGSFLELCSL  586 (660)
Q Consensus       510 ~~~GR~~d~i~~~~G~~v~~~~iE~~l~~~p~V~~~~V~~~~~~---~~~~a~v~~~~~~~~~~~~~~~~~~~~~~~~~~  586 (660)
                      +++||.||+||+ +|++|+|.+||++|.+||+|.+|+|++.+++   +.++|+|++.++.        ..        + 
T Consensus       435 ~~~GR~~d~ik~-~G~~v~p~eIE~~l~~~p~V~~a~V~~~~~~~~g~~~~a~vv~~~~~--------~~--------~-  496 (548)
T 2d1s_A          435 FIVDRLKSLIKY-KGYQVPPAELESVLLQHPSIFDAGVAGVPDPVAGELPGAVVVLESGK--------NM--------T-  496 (548)
T ss_dssp             EEEEEGGGCBCB-TTCCBCHHHHHHHHHTSTTEEEEEEEEEEETTTEEEEEEEEEECTTC--------CC--------C-
T ss_pred             EEeccccceEEE-CCEEECHHHHHHHHHhCCCccEEEEEEEEcCCCCeeeEEEEEEcCCC--------CC--------C-
Confidence            999999999997 8999999999999999999999999997654   4788999987642        00        1 


Q ss_pred             HHHHHHHHHHHHHHHHhCCCCCceeee-EEEEecCCCCCCCCccccccccchHHHHHHHHHHHHHH
Q 006111          587 VQLQNYILSELKNAAERNKLRGFEHIK-GVILDPRPFDMERDLVTATLKKKRNKLLIYYQVEIDQL  651 (660)
Q Consensus       587 ~~~~~~~~~~l~~~~~~~~l~~~~~p~-~i~~~~~~~~~~~~P~t~~GKv~R~~l~~~~~~~i~~~  651 (660)
                             .++|+++++ .+|+.|++|+ .|.++      +.+|+|++||++|++|+++|.+.|++|
T Consensus       497 -------~~~l~~~~~-~~l~~~~~p~~~i~~v------~~lP~t~~GKi~r~~L~~~~~~~i~~~  548 (548)
T 2d1s_A          497 -------EKEVMDYVA-SQVSNAKRLRGGVRFV------DEVPKGLTGKIDGRAIREILKKPVAKM  548 (548)
T ss_dssp             -------HHHHHHHHH-TTSCGGGSCTTCEEEC------SSCCBCTTSCBCHHHHHHHHHSCC---
T ss_pred             -------HHHHHHHHH-HhccccccccccEEEc------cCCCCCCcchhHHHHHHHHHhhhhhcC
Confidence                   134445554 7899999999 88887      446999999999999999999888765

>3c5e_A Acyl-coenzyme A synthetase ACSM2A, mitochondrial; middle-chain acyl-COA synthetase, xenobiotic/medium-chain FA COA ligase; HET: ATP; 1.60A {Homo sapiens} PDB: 2vze_A 3b7w_A* 3day_A* 3eq6_A* 3eyn_A* 3gpc_A* 2wd9_A*

Probab=100.00  E-value=6.2e-73  Score=626.67  Aligned_cols=525  Identities=18%  Similarity=0.200  Sum_probs=421.3

Q ss_pred             CceeccccCCCCCCCCCCCCcHHHHHHHHHHh-----CCCCCceeeeccccCCCCCceEEeHHHHHHHHHHHHHHHHHc-
Q 006111           23 PVYRNLLASNGFPSVDSDLNTAWDIFSMSVQK-----YPGNRMLGWRPFVDGKFGPYVWKTYKEVYEEVLQIVSALRAS-   96 (660)
Q Consensus        23 ~~~~~~~~~~~~~~~~~~~~ti~~~l~~~a~~-----~pd~~a~~~~~~~d~~~~~~~~~Ty~ql~~~v~~lA~~L~~~-   96 (660)
                      ..+++.+..++.-..|..++++.++|++++++     +||++|+++.   +. .+..+++||+||.++++++|++|.+. 
T Consensus        19 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~a~~~~a~~~p~~~al~~~---~~-~g~~~~~Ty~el~~~~~~lA~~L~~~~   94 (570)
T 3c5e_A           19 LYFQSMSLQWGHQEVPAKFNFASDVLDHWADMEKAGKRPPSPALWWV---NG-KGKELMWNFRELSENSQQAANVLSGAC   94 (570)
T ss_dssp             --------CCCBCCCCSBCCHHHHTHHHHHHHHHTTSSCCCEEEEEE---CS-SSCEEEEEHHHHHHHHHHHHHHHHTTT
T ss_pred             eeeeecccccccccCCccccHHHHHHHHHHhhccccCCCCceEEEEE---cC-CCceeEEeHHHHHHHHHHHHHHHHHcc
Confidence            34455555555445566788899999999999     9999999986   42 22347899999999999999999998 


Q ss_pred             CCCCCCEEEEEeCCchhHHHHHHHHHhCCCeEEecCCCCChhHHHHHHhcccceEEEEccchhhhhhccccccccCccEE
Q 006111           97 GAEPGCRVGIYGANCPQWVEAMEACNALSLICVPLYDTLGPGAVNFILDHAEIDFVFVQDKKVKELLSPDCRSAQRLRVM  176 (660)
Q Consensus        97 Gl~~gd~V~l~~~n~~e~~~~~lA~~~~G~~~vpl~~~~~~~~l~~~l~~~~~~~ii~~~~~~~~~~~~~~~~~~~~~~i  176 (660)
                      |+++||+|+++++|++++++++|||+++|++++|+++.++.+++.++++.++++++|++......+.... ...+.+..+
T Consensus        95 Gv~~gd~V~i~~~n~~e~~~~~lA~~~~Ga~~vpl~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~-~~~~~~~~~  173 (570)
T 3c5e_A           95 GLQRGDRVAVVLPRVPEWWLVILGCIRAGLIFMPGTIQMKSTDILYRLQMSKAKAIVAGDEVIQEVDTVA-SECPSLRIK  173 (570)
T ss_dssp             CCCTTCEEEEECCSCHHHHHHHHHHHHHTCEEEECCTTCCHHHHHHHHHHHTCSEEEEETTTHHHHHHHG-GGCTTCCEE
T ss_pred             CCCCCCEEEEEcCCCHHHHHHHHHHHHcCeEEEecCCCCCHHHHHHHHHhcCCeEEEechHHHHHHHHHh-hcCCceeEE
Confidence            9999999999999999999999999999999999999999999999999999999999987765543322 123444455


Q ss_pred             EEecCCcHHHHHHHhhCCcceeeHHHHHhcCccCCccCCCCCCCceEEEEecCCCCCCCceeeecchhHHH-Hhhhhhhh
Q 006111          177 VCFTSLTAEQKEMAVQTGIKPYSWDEFLHLGKVNEMEILPPQPFNICTIMYTSGTSGDPKGVVLTHETIAT-FVSGVDLF  255 (660)
Q Consensus       177 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~TSGTTG~pK~v~~th~~l~~-~~~~~~~~  255 (660)
                      +.++....          .....+.++...... ........++++++|+|||||||.||+|+++|+.+.. ..... ..
T Consensus       174 ~~~~~~~~----------~~~~~~~~~~~~~~~-~~~~~~~~~~d~a~i~~TSGTTG~PKgV~~sh~~~~~~~~~~~-~~  241 (570)
T 3c5e_A          174 LLVSEKSC----------DGWLNFKKLLNEAST-THHCVETGSQEASAIYFTSGTSGLPKMAEHSYSSLGLKAKMDA-GW  241 (570)
T ss_dssp             EEESSSCC----------TTSEEHHHHHHHSCS-CCCCCCCBTTSEEEEEECCCSSSSCCEEEEEHHHHHHHHHHHT-TT
T ss_pred             EEecccCc----------cccccHHHHhhcccc-cccccCCCCCCcEEEEECCCCCCCCCEEEechHHHHhhhhhhh-hh
Confidence            55553211          123456666544322 1222345789999999999999999999999994332 33332 33


Q ss_pred             cccccCCCCCCcEEEEecChhHHHHHHH-HHHHhhcCcEEEEec---CChhhHHHHhhhhcCeEEEechHHHHHHHHHHH
Q 006111          256 LDQFEDKMTVDDVYLSFLPLAHILDRVI-EEYFFRRGASVGYYH---GDLNALRDDLMELKPTLLAGVPRVFEKIHEGIK  331 (660)
Q Consensus       256 ~~~~~~~~~~~~~~l~~~pl~~~~g~~~-~l~~l~~G~~~v~~~---~~~~~~~~~i~~~~~t~~~~~p~~~~~l~~~~~  331 (660)
                      +     ++..+|++++.+|++|.+++.. .+.++..|+++++.+   .++..+++.|+++++|+++++|+++..|.+.. 
T Consensus       242 ~-----~~~~~d~~~~~~p~~~~~~~~~~~~~~l~~G~~~~~~~~~~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~-  315 (570)
T 3c5e_A          242 T-----GLQASDIMWTISDTGWILNILCSLMEPWALGACTFVHLLPKFDPLVILKTLSSYPIKSMMGAPIVYRMLLQQD-  315 (570)
T ss_dssp             T-----SCCTTCEEEECCCTTSHHHHHHTTHHHHHHTCEEEEECCSSCCHHHHHHHHHHSCCCEEEECHHHHHHHHTSC-
T ss_pred             c-----CCCCCceEEEcCchHHHHHHHHHHHHHHHhCceEEEecCCCCCHHHHHHHHHHhCCeEEeccHHHHHHHHhcc-
Confidence            4     7889999999999999999874 678899999999886   38999999999999999999999999886420 


Q ss_pred             HHHHhhchHHHHHHHHHHHHHHHHHhhCCCCCCcchhhhHHHHHHHHHHhCCcEeEEEEccCCCCHHHHHHHHHhcCCce
Q 006111          332 KALEELRPLRRRIFDALYKYKLAWMNMGYKQREASPLADLLAFRKVKARLGGRLRLVISGGAPLSTEVEEFLRVTCCAFL  411 (660)
Q Consensus       332 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lr~i~~~G~~l~~~~~~~~~~~~~~~v  411 (660)
                                                           ....        ..++||.+++||+++++++.+.|.+.+|+++
T Consensus       316 -------------------------------------~~~~--------~~~~lr~i~~gGe~l~~~~~~~~~~~~g~~i  350 (570)
T 3c5e_A          316 -------------------------------------LSSY--------KFPHLQNCVTVGESLLPETLENWRAQTGLDI  350 (570)
T ss_dssp             -------------------------------------TTTC--------CCTTCCEEEEESSCCCHHHHHHHHHHHSCCC
T ss_pred             -------------------------------------cccc--------ccccceEEEEcCCcCCHHHHHHHHHHhCCch
Confidence                                                 0000        1148999999999999999999999889999


Q ss_pred             eeecCCCCCCCceecccCCCccccCccCCCccCeeEEeeecCCCCCCCCCCCCCceEEEc-----cCCcccccCCCchhh
Q 006111          412 VQGYGLTETCGPTTVCFPDEMCMVGTAGPVSVYSELRLEEVPEMGYSPLDDPPCGEVCVR-----GKTLFSGYYKNPDLT  486 (660)
Q Consensus       412 ~~~YG~tE~~~~~~~~~~~~~~~~~~~G~~~~~~~v~ivd~~~~~~~~~~~~~~Gei~v~-----g~~~~~gy~~~~~~~  486 (660)
                      ++.||+||++..++..... ....+++|+|+++++++|+| +++..  ++.|+.|||+|+     |++++.||+++++.+
T Consensus       351 ~~~YG~TE~~~~~~~~~~~-~~~~~~vG~p~~~~~v~i~d-~~g~~--~~~G~~GEl~v~~~~~~g~~v~~GY~~~~~~t  426 (570)
T 3c5e_A          351 RESYGQTETGLTCMVSKTM-KIKPGYMGTAASCYDVQIID-DKGNV--LPPGTEGDIGIRVKPIRPIGIFSGYVDNPDKT  426 (570)
T ss_dssp             EEEEEETTTEEEEECCTTS-CCCTTCCCEECTTCCEEEEC-TTSCB--CCTTCCEEEEEECSSBCCTTCCCEETTCHHHH
T ss_pred             hhccchhhcccceecCccc-ccCCCcccccCCCceEEEEC-CCCCC--CCCCCCCeeEEeccCCCCchhhccccCChhHh
Confidence            9999999999766554332 33458999999999999999 77654  455689999999     999999999999999


Q ss_pred             hhcccCCccccCceEEECCCCcEEEEeccCCeeEcCCCeeecchhHHHHHhcCcCcceEEEEecCCC---CeEEEEEEcC
Q 006111          487 RESIIDGWFHTGDIGQILPNGVVKIIDRKKNLIKISQGEYVALEYLENVYCVAPIIEDIWVYGDSLK---SMLVAVVVPC  563 (660)
Q Consensus       487 ~~~~~~g~~~TGDl~~~~~~G~l~~~GR~~d~i~~~~G~~v~~~~iE~~l~~~p~V~~~~V~~~~~~---~~~~a~v~~~  563 (660)
                      .+.|.+|||+|||+|++|+||+|++.||.||+||+ +|++|+|.+||++|.+||+|.+|+|++.+++   +.++|+|++.
T Consensus       427 ~~~f~~~~~~TGDlg~~d~dG~l~~~GR~dd~Ik~-~G~~V~p~eIE~~l~~~p~V~~a~Vv~~~~~~~g~~~~a~vv~~  505 (570)
T 3c5e_A          427 AANIRGDFWLLGDRGIKDEDGYFQFMGRADDIINS-SGYRIGPSEVENALMEHPAVVETAVISSPDPVRGEVVKAFVVLA  505 (570)
T ss_dssp             HHTEETTEEEEEEEEEECTTSCEEEEEEGGGCEEE-TTEEECHHHHHHHHHTSTTEEEEEEEEEEETTTEEEEEEEEEEC
T ss_pred             hhhhcCCccccceeEEEcCCceEEEEecCCCEEEE-CCEEECHHHHHHHHHhCCCcceEEEEeeeCCCCCeEEEEEEEEC
Confidence            99999999999999999999999999999999997 8999999999999999999999999997654   4788999987


Q ss_pred             hhhHHHHHHHCCCCCcHHHHhccHHHHHHHHHHHHHHHHhCCCCCceeeeEEEEecCCCCCCCCccccccccchHHHHHH
Q 006111          564 EEDTKKWAYSNGHAGSFLELCSLVQLQNYILSELKNAAERNKLRGFEHIKGVILDPRPFDMERDLVTATLKKKRNKLLIY  643 (660)
Q Consensus       564 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~l~~~~~p~~i~~~~~~~~~~~~P~t~~GKv~R~~l~~~  643 (660)
                      ++..         .       ..   .+.+.++|+++++ ..||.|++|+.|++++      .+|+|++||++|++|+++
T Consensus       506 ~~~~---------~-------~~---~~~~~~~l~~~l~-~~L~~~~~P~~i~~v~------~lP~t~~GKi~R~~L~~~  559 (570)
T 3c5e_A          506 SQFL---------S-------HD---PEQLTKELQQHVK-SVTAPYKYPRKIEFVL------NLPKTVTGKIQRAKLRDK  559 (570)
T ss_dssp             GGGT---------T-------SC---HHHHHHHHHHHHH-HHSCGGGSCSEEEEES------CCCBCTTCCBCHHHHHHH
T ss_pred             Cccc---------C-------cc---hHHHHHHHHHHHH-hhCccccCCcEEEEec------cCCCCCCcCCcHHHHHHH
Confidence            7530         0       00   1223455666665 6799999999999974      458999999999999988


Q ss_pred             HHH
Q 006111          644 YQV  646 (660)
Q Consensus       644 ~~~  646 (660)
                      +.+
T Consensus       560 ~~~  562 (570)
T 3c5e_A          560 EWK  562 (570)
T ss_dssp             HTC
T ss_pred             HHh
Confidence            754

>1pg4_A Acetyl-COA synthetase; AMP-forming, adenylate-forming, thioester-forming, ligase; HET: COA PRX; 1.75A {Salmonella enterica} SCOP: e.23.1.1 PDB: 1pg3_A* 2p2f_A* 2p2b_A* 2p2q_A* 2p2j_A* 2p20_A* 2p2m_A*

Probab=100.00  E-value=2.5e-73  Score=639.40  Aligned_cols=523  Identities=16%  Similarity=0.180  Sum_probs=419.7

Q ss_pred             CCCcHHHHHHHHHHhCCCCCceeeeccccCCCCCceEEeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEeCCchhHHHHHH
Q 006111           40 DLNTAWDIFSMSVQKYPGNRMLGWRPFVDGKFGPYVWKTYKEVYEEVLQIVSALRASGAEPGCRVGIYGANCPQWVEAME  119 (660)
Q Consensus        40 ~~~ti~~~l~~~a~~~pd~~a~~~~~~~d~~~~~~~~~Ty~ql~~~v~~lA~~L~~~Gl~~gd~V~l~~~n~~e~~~~~l  119 (660)
                      ..+++.++|+++++++||++|+++.   +...+..+++||+||.++++++|++|++.|+++||+|+++++|++++++++|
T Consensus        74 ~~n~~~~~l~~~a~~~pd~~Al~~~---~~~~~~~~~lTY~eL~~~v~~lA~~L~~~Gv~~Gd~V~i~~~~~~e~vva~l  150 (652)
T 1pg4_A           74 TLNLAANCLDRHLQENGDRTAIIWE---GDDTSQSKHISYRELHRDVCRFANTLLDLGIKKGDVVAIYMPMVPEAAVAML  150 (652)
T ss_dssp             EECHHHHHTGGGHHHHTTSEEEEEE---CSSTTCEEEEEHHHHHHHHHHHHHHHHHHTCCTTCEEEEECCSSHHHHHHHH
T ss_pred             ChhHHHHHHHHHhccCCCceEEEEE---cCCCCceeEEeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEeCCCHHHHHHHH
Confidence            4578999999999999999999986   3333455899999999999999999999999999999999999999999999


Q ss_pred             HHHhCCCeEEecCCCCChhHHHHHHhcccceEEEEccchhh---------hhhcccccc-ccCccEEEEecCCcHHHHHH
Q 006111          120 ACNALSLICVPLYDTLGPGAVNFILDHAEIDFVFVQDKKVK---------ELLSPDCRS-AQRLRVMVCFTSLTAEQKEM  189 (660)
Q Consensus       120 A~~~~G~~~vpl~~~~~~~~l~~~l~~~~~~~ii~~~~~~~---------~~~~~~~~~-~~~~~~i~~~~~~~~~~~~~  189 (660)
                      ||+++|++++|+++.++.+++..+|++++++++|+++....         .+.+..... ...+..+++++......   
T Consensus       151 A~~~~Gav~vpl~~~~~~~~l~~~l~~~~~~~li~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vi~~~~~~~~~---  227 (652)
T 1pg4_A          151 ACARIGAVHSVIFGGFSPEAVAGCIIDSSSRLVITADEGVRAGRSIPLKKNVDDALKNPNVTSVEHVIVLKRTGSDI---  227 (652)
T ss_dssp             HHHHHTCEEEECCTTSCHHHHHHHHHHHTCSEEEEESEEEETTEEEESHHHHHHHHTSTTCCSCCEEEEECSSCCCC---
T ss_pred             HHHHcCcEEEecCCCCCHHHHHHHHHhcCCCEEEEcCccccCCcccchHHHHHHHHhcCCcCCCCEEEEEeCCCCcc---
Confidence            99999999999999999999999999999999999876432         111111100 01345566655321000   


Q ss_pred             HhhCCcceeeHHHHHhcCccCCccCCCCCCCceEEEEecCCCCCCCceeeecchhHHHHhh-hhhhhcccccCCCCCCcE
Q 006111          190 AVQTGIKPYSWDEFLHLGKVNEMEILPPQPFNICTIMYTSGTSGDPKGVVLTHETIATFVS-GVDLFLDQFEDKMTVDDV  268 (660)
Q Consensus       190 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~TSGTTG~pK~v~~th~~l~~~~~-~~~~~~~~~~~~~~~~~~  268 (660)
                       ........+|.++..... .........++++++|+|||||||.||||+++|++++..+. .+...+     ++..+|+
T Consensus       228 -~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~d~a~ilyTSGTTG~PKgV~~sh~~~~~~~~~~~~~~~-----~~~~~d~  300 (652)
T 1pg4_A          228 -DWQEGRDLWWRDLIEKAS-PEHQPEAMNAEDPLFILYTSGSTGKPKGVLHTTGGYLVYAATTFKYVF-----DYHPGDI  300 (652)
T ss_dssp             -CCCBTTEEEHHHHHTTSC-SCCCCCCEETTSEEEEEEECCSSSSCEEEEEESHHHHHHHHHHHHHHT-----TCCTTCE
T ss_pred             -cccCCCceeHHHHHhhcC-CCCCccccCCCCCEEEEeccCCCCCCceEEECchHHHHHHHHHHHHhc-----CCCCCCE
Confidence             000112356777765432 12233445689999999999999999999999999887664 334445     7889999


Q ss_pred             EEEecChhHHHHHHH-HHHHhhcCcEEEEecC-----ChhhHHHHhhhhcCeEEEechHHHHHHHHHHHHHHHhhchHHH
Q 006111          269 YLSFLPLAHILDRVI-EEYFFRRGASVGYYHG-----DLNALRDDLMELKPTLLAGVPRVFEKIHEGIKKALEELRPLRR  342 (660)
Q Consensus       269 ~l~~~pl~~~~g~~~-~l~~l~~G~~~v~~~~-----~~~~~~~~i~~~~~t~~~~~p~~~~~l~~~~~~~~~~~~~~~~  342 (660)
                      +++.+|++|..++.. ++.+++.|+++++.+.     ++..+++.|+++++|+++++|++++.|.+....          
T Consensus       301 ~l~~~~~~~~~g~~~~~~~~L~~G~t~vl~~~~~~~~~~~~~~~~i~~~~vt~~~~~P~~~~~l~~~~~~----------  370 (652)
T 1pg4_A          301 YWCTADVGWVTGHSYLLYGPLACGATTLMFEGVPNWPTPARMCQVVDKHQVNILYTAPTAIRALMAEGDK----------  370 (652)
T ss_dssp             EEECSCTTSHHHHHHTTHHHHHTTCEEEEECSCTTSSSTTHHHHHHHHHTCSEEEECHHHHHHHHTTGGG----------
T ss_pred             EEEccCCeeeechHHHHHHHHHcCceEEEECCCCCCCCHHHHHHHHHHhCCeEEEeCHHHHHHHHhcCcc----------
Confidence            999999999999854 7888999999999863     789999999999999999999999988642110          


Q ss_pred             HHHHHHHHHHHHHHhhCCCCCCcchhhhHHHHHHHHHHhCCcEeEEEEccCCCCHHHHHHHHHhcC---CceeeecCCCC
Q 006111          343 RIFDALYKYKLAWMNMGYKQREASPLADLLAFRKVKARLGGRLRLVISGGAPLSTEVEEFLRVTCC---AFLVQGYGLTE  419 (660)
Q Consensus       343 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lr~i~~~G~~l~~~~~~~~~~~~~---~~v~~~YG~tE  419 (660)
                                               .....+        +++||.+++||+++++++.+++.+.+|   +++++.||+||
T Consensus       371 -------------------------~~~~~~--------l~sLr~i~~gGe~l~~~~~~~~~~~~g~~~~~i~~~YG~TE  417 (652)
T 1pg4_A          371 -------------------------AIEGTD--------RSSLRILGSVGEPINPEAWEWYWKKIGKEKCPVVDTWWQTE  417 (652)
T ss_dssp             -------------------------GTTTCC--------CTTCCEEEEESSCCCHHHHHHHHHHTTTTCSCEEEEBCCGG
T ss_pred             -------------------------ccccCC--------cCceEEEEEecCCCCHHHHHHHHHHhCCCCCcEEccccCcc
Confidence                                     001111        259999999999999999999999888   89999999999


Q ss_pred             CCCceecccCC-CccccCccCCCccCeeEEeeecCCCCCCCCCCCCCceEEEcc--CCcccccCCCchhhhhcc---cCC
Q 006111          420 TCGPTTVCFPD-EMCMVGTAGPVSVYSELRLEEVPEMGYSPLDDPPCGEVCVRG--KTLFSGYYKNPDLTRESI---IDG  493 (660)
Q Consensus       420 ~~~~~~~~~~~-~~~~~~~~G~~~~~~~v~ivd~~~~~~~~~~~~~~Gei~v~g--~~~~~gy~~~~~~~~~~~---~~g  493 (660)
                      +++.++....+ .....+++|+|++|++++|+| +++..+  +.|+.|||+|+|  |+++.||+++++.+.+.|   .+|
T Consensus       418 ~~~~~~~~~~~~~~~~~~s~G~p~~g~~v~i~d-~~g~~v--~~g~~GEl~i~g~~p~~~~gY~~~~e~~~~~~~~~~~g  494 (652)
T 1pg4_A          418 TGGFMITPLPGAIELKAGSATRPFFGVQPALVD-NEGHPQ--EGATEGNLVITDSWPGQARTLFGDHERFEQTYFSTFKN  494 (652)
T ss_dssp             GSSCSBCCCTTTCCBCTTCCBSBCTTCCEEEEC-TTCCBC--CSSEEEEEEECSCCTTCCCEETTCHHHHHHHHHSSSTT
T ss_pred             cccceecCCCCCcCccCCccccCcCCCeEEEEC-CCCCCc--CCCceEEEEEccCCCchhhhhcCCHHHHHhhhhhcCCC
Confidence            99877665433 234558999999999999999 776644  446789999999  799999999999887776   389


Q ss_pred             ccccCceEEECCCCcEEEEeccCCeeEcCCCeeecchhHHHHHhcCcCcceEEEEecCCC---CeEEEEEEcChhhHHHH
Q 006111          494 WFHTGDIGQILPNGVVKIIDRKKNLIKISQGEYVALEYLENVYCVAPIIEDIWVYGDSLK---SMLVAVVVPCEEDTKKW  570 (660)
Q Consensus       494 ~~~TGDl~~~~~~G~l~~~GR~~d~i~~~~G~~v~~~~iE~~l~~~p~V~~~~V~~~~~~---~~~~a~v~~~~~~~~~~  570 (660)
                      ||+|||+|++|+||+|+++||+||+||+ +|++|+|.|||++|.+||+|.+|+|++.+++   +.++|+|+++++..   
T Consensus       495 ~y~TGDlg~~d~dG~l~i~GR~dd~Ik~-~G~rI~~~eIE~~l~~~p~V~ea~Vvg~~~~~~g~~l~a~Vv~~~~~~---  570 (652)
T 1pg4_A          495 MYFSGDGARRDEDGYYWITGRVDDVLNV-SGHRLGTAEIESALVAHPKIAEAAVVGIPHAIKGQAIYAYVTLNHGEE---  570 (652)
T ss_dssp             SEEEEEEEEECTTSCEEEEEESSSEEEE-TTEEEEHHHHHHHHHHSTTEEEEEEEEEEETTTEEEEEEEEEECTTCC---
T ss_pred             EEECCcEEEEcCCCcEEEEecCCCEEEE-CCEEECHHHHHHHHHhCCCcceEEEEEEEcCCCCeEEEEEEEECCCCC---
Confidence            9999999999999999999999999998 7999999999999999999999999997654   47999999987530   


Q ss_pred             HHHCCCCCcHHHHhccHHHHHHHHHHHHHHHHhCCCCCceeeeEEEEecCCCCCCCCccccccccchHHHHHHHHHHHHH
Q 006111          571 AYSNGHAGSFLELCSLVQLQNYILSELKNAAERNKLRGFEHIKGVILDPRPFDMERDLVTATLKKKRNKLLIYYQVEIDQ  650 (660)
Q Consensus       571 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~l~~~~~p~~i~~~~~~~~~~~~P~t~~GKv~R~~l~~~~~~~i~~  650 (660)
                                    ...+    +.++|+++++ ..||.|++|+.|++++      .+|+|++||++|++|++.+.++++.
T Consensus       571 --------------~~~~----~~~~l~~~l~-~~l~~~~~P~~i~~v~------~lP~T~sGKi~R~~L~~~~~~~~~~  625 (652)
T 1pg4_A          571 --------------PSPE----LYAEVRNWVR-KEIGPLATPDVLHWTD------SLPKTRSGKIMRRILRKIAAGDTSN  625 (652)
T ss_dssp             --------------CCHH----HHHHHHHHHH-HHTCGGGCCSEEEECS------CCCBCTTSCBCHHHHHHHHHTC---
T ss_pred             --------------CCHH----HHHHHHHHHH-HhCCCCcCCeEEEEcC------CCCCCCCccchHHHHHHHHhCCCCC
Confidence                          1122    2345555554 6799999999999874      4689999999999999999876544

>4fuq_A Malonyl COA synthetase; ANL superfamily, methylma malonate, ligase; HET: MSE; 1.70A {Rhodopseudomonas palustris} PDB: 4fut_A* 4gxr_A* 4gxq_A*

Probab=100.00  E-value=1.3e-73  Score=623.74  Aligned_cols=491  Identities=23%  Similarity=0.297  Sum_probs=400.5

Q ss_pred             HHHHHHHHhCCCCCceeeeccccCCCCCceEEeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEeCCchhHHHHHHHHHhCC
Q 006111           46 DIFSMSVQKYPGNRMLGWRPFVDGKFGPYVWKTYKEVYEEVLQIVSALRASGAEPGCRVGIYGANCPQWVEAMEACNALS  125 (660)
Q Consensus        46 ~~l~~~a~~~pd~~a~~~~~~~d~~~~~~~~~Ty~ql~~~v~~lA~~L~~~Gl~~gd~V~l~~~n~~e~~~~~lA~~~~G  125 (660)
                      ++|++.++++|+++++...   +..+   +++||+||.++++++|++|++.|+++||+|+++++|++++++++|||+++|
T Consensus         4 ~l~~~~a~~~p~~~a~~~~---~~~~---~~~Ty~eL~~~~~~lA~~L~~~Gv~~gd~V~i~~~~~~~~~~~~lA~~~~G   77 (503)
T 4fuq_A            4 NLFARLFDKLDDPHKLAIE---TAAG---DKISYAELVARAGRVANVLVARGLQVGDRVAAQTEKSVEALVLYLATVRAG   77 (503)
T ss_dssp             CHHHHHHSCCSCTTSEEEE---ETTC---CEEEHHHHHHHHHHHHHHHHHTTCCTTCEEEEECCSCHHHHHHHHHHHHTT
T ss_pred             hHHHHHHHhCCCCceEEEe---cCCC---cEEEHHHHHHHHHHHHHHHHHcCCCCCCEEEEECCCCHHHHHHHHHHHHcC
Confidence            5788999999999999864   2111   589999999999999999999999999999999999999999999999999


Q ss_pred             CeEEecCCCCChhHHHHHHhcccceEEEEccchhhhhhccccccccCccEEEEecCCcHHHHHHHhhCCcceeeHHHHHh
Q 006111          126 LICVPLYDTLGPGAVNFILDHAEIDFVFVQDKKVKELLSPDCRSAQRLRVMVCFTSLTAEQKEMAVQTGIKPYSWDEFLH  205 (660)
Q Consensus       126 ~~~vpl~~~~~~~~l~~~l~~~~~~~ii~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  205 (660)
                      ++++|+++.++.+++.+++++++++++|++......+....... .  ..+..++....             ..+.....
T Consensus        78 a~~vpl~~~~~~~~l~~il~~~~~~~vi~~~~~~~~~~~~~~~~-~--~~~~~~~~~~~-------------~~~~~~~~  141 (503)
T 4fuq_A           78 GVYLPLNTAYTLHELDYFITDAEPKIVVCDPSKRDGIAAIAAKV-G--ATVETLGPDGR-------------GSLTDAAA  141 (503)
T ss_dssp             CEEEECCTTCCHHHHHHHHHHHCCSEEEECGGGTTTTHHHHHHH-T--CEEEECCTTSC-------------SHHHHHHH
T ss_pred             cEEEecCCCCCHHHHHHHHHhcCCcEEEECchhhHHHHHHHhhc-C--ceEEEecCCcc-------------cccchhhh
Confidence            99999999999999999999999999999987654432221111 1  12333332110             01111111


Q ss_pred             cCccCCccCCCCCCCceEEEEecCCCCCCCceeeecchhHHHHhhhhhhhcccccCCCCCCcEEEEecChhHHHHHHH-H
Q 006111          206 LGKVNEMEILPPQPFNICTIMYTSGTSGDPKGVVLTHETIATFVSGVDLFLDQFEDKMTVDDVYLSFLPLAHILDRVI-E  284 (660)
Q Consensus       206 ~~~~~~~~~~~~~~~~~~~i~~TSGTTG~pK~v~~th~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~pl~~~~g~~~-~  284 (660)
                      .. ..........++++++|+|||||||.||+|+++|+++.+.+......+     ++..++++++.+|++|.+|+.. .
T Consensus       142 ~~-~~~~~~~~~~~~d~a~i~~TSGTTG~PKgV~~sh~~l~~~~~~~~~~~-----~~~~~d~~~~~~p~~~~~g~~~~~  215 (503)
T 4fuq_A          142 GA-SEAFATIDRGADDLAAILYTSGTTGRSKGAMLSHDNLASNSLTLVDYW-----RFTPDDVLIHALPIYHTHGLFVAS  215 (503)
T ss_dssp             TS-CSCCCCCCCCTTSEEEEEECC--CCSCCEEEEEHHHHHHHHHHHHHHT-----TCCTTCEEEECSCSSSHCCCCCCH
T ss_pred             cC-CCCcCcCCCCCCCeEEEEECCCcccCCeEEEEeHHHHHHHHHHHHHHh-----CCCCCCEEEEeCChHHHHHHHHHH
Confidence            11 122233456789999999999999999999999999999998887777     8899999999999999998765 6


Q ss_pred             HHHhhcCcEEEEecC-ChhhHHHHhhhhcCeEEEechHHHHHHHHHHHHHHHhhchHHHHHHHHHHHHHHHHHhhCCCCC
Q 006111          285 EYFFRRGASVGYYHG-DLNALRDDLMELKPTLLAGVPRVFEKIHEGIKKALEELRPLRRRIFDALYKYKLAWMNMGYKQR  363 (660)
Q Consensus       285 l~~l~~G~~~v~~~~-~~~~~~~~i~~~~~t~~~~~p~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  363 (660)
                      +.+++.|+++++.+. ++..+++.++  ++|+++++|+++..+++...                                
T Consensus       216 ~~~l~~g~~~~~~~~~~~~~~~~~i~--~~t~~~~~P~~~~~l~~~~~--------------------------------  261 (503)
T 4fuq_A          216 NVTLFARGSMIFLPKFDPDKILDLMA--RATVLMGVPTFYTRLLQSPR--------------------------------  261 (503)
T ss_dssp             HHHHHTTCEEEECSSCCHHHHHHHHT--TCCEEEECHHHHHHHHTCTT--------------------------------
T ss_pred             HHHHHhCCEEEEcCCCCHHHHHHHHh--hcCEEEEHHHHHHHHHhCCC--------------------------------
Confidence            677899999988876 9999999998  89999999999998864211                                


Q ss_pred             CcchhhhHHHHHHHHHHhCCcEeEEEEccCCCCHHHHHHHHHhcCCceeeecCCCCCCCceecccCCCccccCccCCCcc
Q 006111          364 EASPLADLLAFRKVKARLGGRLRLVISGGAPLSTEVEEFLRVTCCAFLVQGYGLTETCGPTTVCFPDEMCMVGTAGPVSV  443 (660)
Q Consensus       364 ~~~~~~~~~~~~~~~~~~~~~lr~i~~~G~~l~~~~~~~~~~~~~~~v~~~YG~tE~~~~~~~~~~~~~~~~~~~G~~~~  443 (660)
                           ....        ..+++|.+++||+++++++.+.|.+.+|+.+++.||+||++..++... ......+++|+|++
T Consensus       262 -----~~~~--------~~~~lr~~~~gg~~l~~~~~~~~~~~~~~~~~~~YG~TE~~~~~~~~~-~~~~~~~~~G~p~~  327 (503)
T 4fuq_A          262 -----LTKE--------TTGHMRLFISGSAPLLADTHREWSAKTGHAVLERYGMTETNMNTSNPY-DGDRVPGAVGPALP  327 (503)
T ss_dssp             -----CSTT--------TTTTCCEEEECSSCCCHHHHHHHHHHHSCCEEECCEETTTEECBCCCS-SSCCCTTEEEEBCT
T ss_pred             -----cccc--------chhhcEEEEECCCCCCHHHHHHHHHHhCCCccceEcccccCcccccCC-CCCCcCCccccCCC
Confidence                 0111        114899999999999999999999999999999999999987755333 33444589999999


Q ss_pred             CeeEEeeecCCCCCCCCCCCCCceEEEccCCcccccCCCchhhhhcc-cCCccccCceEEECCCCcEEEEeccCCeeEcC
Q 006111          444 YSELRLEEVPEMGYSPLDDPPCGEVCVRGKTLFSGYYKNPDLTRESI-IDGWFHTGDIGQILPNGVVKIIDRKKNLIKIS  522 (660)
Q Consensus       444 ~~~v~ivd~~~~~~~~~~~~~~Gei~v~g~~~~~gy~~~~~~~~~~~-~~g~~~TGDl~~~~~~G~l~~~GR~~d~i~~~  522 (660)
                      +++++|+| ++.+ .+++.|+.|||+|+||+++.||+++++.+.+.| .+|||+|||+|++|+||.++++||.||+||+ 
T Consensus       328 ~~~~~i~d-~~~g-~~~~~g~~GEl~v~g~~v~~GY~~~~~~t~~~f~~~g~~~TGDl~~~~~dG~l~~~GR~dd~ik~-  404 (503)
T 4fuq_A          328 GVSARVTD-PETG-KELPRGDIGMIEVKGPNVFKGYWRMPEKTKSEFRDDGFFITGDLGKIDERGYVHILGRGKDLVIT-  404 (503)
T ss_dssp             TCEEEEEC-TTTC-CBCCTTCCEEEEEESTTSCCCBTTCHHHHHHTBCTTSCEEEEEEEEECTTCEEEECCSSTTCEEE-
T ss_pred             CeEEEEEE-CCCC-CCCcCCCceEEEEECCchhhhhcCChhhhHhhhCCCCCeEcceeEEEcCCCcEEEEecCCCEEEE-
Confidence            99999999 4433 345667899999999999999999999999999 6999999999999999999999999999997 


Q ss_pred             CCeeecchhHHHHHhcCcCcceEEEEecCCC---CeEEEEEEcChhhHHHHHHHCCCCCcHHHHhccHHHHHHHHHHHHH
Q 006111          523 QGEYVALEYLENVYCVAPIIEDIWVYGDSLK---SMLVAVVVPCEEDTKKWAYSNGHAGSFLELCSLVQLQNYILSELKN  599 (660)
Q Consensus       523 ~G~~v~~~~iE~~l~~~p~V~~~~V~~~~~~---~~~~a~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~  599 (660)
                      +|++|+|.+||++|.+||+|.+|+|++.+++   +.++|+|++.++.        ..        +        .+++++
T Consensus       405 ~G~~v~p~eIE~~l~~~p~V~~a~vv~~~~~~~~~~~~a~v~~~~~~--------~~--------~--------~~~l~~  460 (503)
T 4fuq_A          405 GGFNVYPKEIESEIDAMPGVVESAVIGVPHADFGEGVTAVVVRDKGA--------TI--------D--------EAQVLH  460 (503)
T ss_dssp             TTEEECHHHHHHHHHTSTTEEEEEEEEEEETTTEEEEEEEEEECTTC--------CC--------C--------HHHHHH
T ss_pred             CCEEECHHHHHHHHHhCCCeeEEEEEEeEchhcCceeEEEEEeCCCC--------CC--------C--------HHHHHH
Confidence            7999999999999999999999999986654   4788999987753        00        1        123444


Q ss_pred             HHHhCCCCCceeeeEEEEecCCCCCCCCccccccccchHHHHHHHHH
Q 006111          600 AAERNKLRGFEHIKGVILDPRPFDMERDLVTATLKKKRNKLLIYYQV  646 (660)
Q Consensus       600 ~~~~~~l~~~~~p~~i~~~~~~~~~~~~P~t~~GKv~R~~l~~~~~~  646 (660)
                      +++ ..||.|++|+.|++++      .+|+|++||++|++|+++|++
T Consensus       461 ~l~-~~L~~~~~P~~i~~v~------~lP~t~~GKi~R~~L~~~~~~  500 (503)
T 4fuq_A          461 GLD-GQLAKFKMPKKVIFVD------DLPRNTMGKVQKNVLRETYKD  500 (503)
T ss_dssp             HHB-TTBCGGGCCSEEEEES------CCCBCTTSCBCHHHHHHHTTT
T ss_pred             HHH-hhcccCCCCCEEEEEC------CCCCCcccceeHHHHHHHHHH
Confidence            444 7899999999999974      469999999999999998854

>1ry2_A Acetyl-coenzyme A synthetase 1, acyl-activating enzyme 1; AMP forming, related to firefly luciferase, ligase; HET: AMP; 2.30A {Saccharomyces cerevisiae} SCOP: e.23.1.1

Probab=100.00  E-value=9.3e-73  Score=634.87  Aligned_cols=533  Identities=18%  Similarity=0.187  Sum_probs=416.2

Q ss_pred             CCCcHHHHHHHHHHhCCCCCceeeeccccCCCCCceEEeHHHHHHHHHHHHHHHH-HcCCCCCCEEEEEeCCchhHHHHH
Q 006111           40 DLNTAWDIFSMSVQKYPGNRMLGWRPFVDGKFGPYVWKTYKEVYEEVLQIVSALR-ASGAEPGCRVGIYGANCPQWVEAM  118 (660)
Q Consensus        40 ~~~ti~~~l~~~a~~~pd~~a~~~~~~~d~~~~~~~~~Ty~ql~~~v~~lA~~L~-~~Gl~~gd~V~l~~~n~~e~~~~~  118 (660)
                      ..|++.++|+++++++||++|+++.   +...+..+++||+||.++++++|+.|+ +.|+++||+|+++++|++++++++
T Consensus        80 ~~n~~~~~l~~~a~~~pd~~Al~~~---~~~~~~~~~~TY~eL~~~v~~lA~~L~~~~Gv~~Gd~V~i~~~~~~e~v~a~  156 (663)
T 1ry2_A           80 QLNACYNCVDRHALKTPNKKAIIFE---GDEPGQGYSITYKELLEEVCQVAQVLTYSMGVRKGDTVAVYMPMVPEAIITL  156 (663)
T ss_dssp             EECHHHHHTHHHHTTCTTSEEEEEE---CSSTTCCEEEEHHHHHHHHHHHHHHHHHTSCCCTTCEEEECCCSSHHHHHHH
T ss_pred             CccHHHHHHHHHhccCCCceEEEEE---cCCCCceEEEEHHHHHHHHHHHHHHHHHhcCCCCCCEEEEEcCCCHHHHHHH
Confidence            3588999999999999999999986   333344589999999999999999999 999999999999999999999999


Q ss_pred             HHHHhCCCeEEecCCCCChhHHHHHHhcccceEEEEccchhhh--------hhccccccccCccEEEEecCCcHHHHHHH
Q 006111          119 EACNALSLICVPLYDTLGPGAVNFILDHAEIDFVFVQDKKVKE--------LLSPDCRSAQRLRVMVCFTSLTAEQKEMA  190 (660)
Q Consensus       119 lA~~~~G~~~vpl~~~~~~~~l~~~l~~~~~~~ii~~~~~~~~--------~~~~~~~~~~~~~~i~~~~~~~~~~~~~~  190 (660)
                      |||+++|++++|+++.++.+++..+|++++++++|+++.....        .........+.+..+++++......   .
T Consensus       157 lA~~~~Gav~vpl~~~~~~~~l~~~l~~~~~~~li~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vi~~~~~~~~~---~  233 (663)
T 1ry2_A          157 LAISRIGAIHSVVFAGFSSNSLRDRINDGDSKVVITTDESNRGGKVIETKRIVDDALRETPGVRHVLVYRKTNNPS---V  233 (663)
T ss_dssp             HHHHHTTCEEEECCTTSCHHHHHHHHHHHTCSEEEEESBCCBTTBCCBHHHHHHHHTTSCTTCCEEEEECSSCCSS---C
T ss_pred             HHHHHcCCEEEeeCCCCCHHHHHHHHHhcCCeEEEEccccccCCcccchHHHHHHHHHhCCCCceEEEEecCCCCc---c
Confidence            9999999999999999999999999999999999998765321        1111111223455666655321000   0


Q ss_pred             hhCCcceeeHHHHHhcCccCCccCCCCCCCceEEEEecCCCCCCCceeeecchhHHHHhhh-hhhhcccccCCCCCCcEE
Q 006111          191 VQTGIKPYSWDEFLHLGKVNEMEILPPQPFNICTIMYTSGTSGDPKGVVLTHETIATFVSG-VDLFLDQFEDKMTVDDVY  269 (660)
Q Consensus       191 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~TSGTTG~pK~v~~th~~l~~~~~~-~~~~~~~~~~~~~~~~~~  269 (660)
                      ........+|.++..... ...+..+..++++++|+|||||||.||||+++|++++..+.. ....+     ++..+|++
T Consensus       234 ~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~d~a~ilyTSGTTG~PKgV~~sh~~~~~~~~~~~~~~~-----~~~~~d~~  307 (663)
T 1ry2_A          234 AFHAPRDLDWATEKKKYK-TYYPCTPVDSEDPLFLLYTSGSTGAPKGVQHSTAGYLLGALLTMRYTF-----DTHQEDVF  307 (663)
T ss_dssp             CCCSSSEEEHHHHHTTSC-SCCCCCCEETTSCCEEEEECCSSSSCEEEEECSHHHHHHHHHHHHHHS-----CCCSSCEE
T ss_pred             ccCCCccccHHHHHhhcC-CCCCccccCCCCceEEEeccCCCCCCceEEEchhHHHHHHHHHHHHhc-----CCCCCcEE
Confidence            000112356777765432 222334557899999999999999999999999998776643 33344     78899999


Q ss_pred             EEecChhHHHHHHH-HHHHhhcCcEEEEecC-----ChhhHHHHhhhhcCeEEEechHHHHHHHHHHHHHHHhhchHHHH
Q 006111          270 LSFLPLAHILDRVI-EEYFFRRGASVGYYHG-----DLNALRDDLMELKPTLLAGVPRVFEKIHEGIKKALEELRPLRRR  343 (660)
Q Consensus       270 l~~~pl~~~~g~~~-~l~~l~~G~~~v~~~~-----~~~~~~~~i~~~~~t~~~~~p~~~~~l~~~~~~~~~~~~~~~~~  343 (660)
                      ++..|++|..++.. ++.+++.|+++++.+.     ++..+++.|+++++|+++++|++++.|.+...            
T Consensus       308 ~~~~~~~~~~g~~~~~~~~L~~G~t~v~~~~~~~~~~~~~~~~~i~~~~vt~~~~~Ps~~~~l~~~~~------------  375 (663)
T 1ry2_A          308 FTAGDIGWITGHTYVVYGPLLYGCATLVFEGTPAYPNYSRYWDIIDEHKVTQFYVAPTALRLLKRAGD------------  375 (663)
T ss_dssp             EECSCTTSHHHHHHTTHHHHHHTSEEEEECSCTTSSCTTHHHHHHHHTTCSEEEECHHHHHHHTTSCT------------
T ss_pred             EEcCCcHHhhhhHHHHHHHHHhCCEEEEECCCCCCCCHHHHHHHHHHcCCCEEEecHHHHHHHHhcCc------------
Confidence            99999999999854 7788999999999863     78999999999999999999999988753210            


Q ss_pred             HHHHHHHHHHHHHhhCCCCCCcchhhhHHHHHHHHHHhCCcEeEEEEccCCCCHHHHHHHHHhcC---CceeeecCCCCC
Q 006111          344 IFDALYKYKLAWMNMGYKQREASPLADLLAFRKVKARLGGRLRLVISGGAPLSTEVEEFLRVTCC---AFLVQGYGLTET  420 (660)
Q Consensus       344 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lr~i~~~G~~l~~~~~~~~~~~~~---~~v~~~YG~tE~  420 (660)
                                             ...+..+        +++||.+++||+++++++.+++.+.+|   +++++.||+||+
T Consensus       376 -----------------------~~~~~~~--------l~sLr~i~~gGe~l~~~~~~~~~~~~g~~~~~i~~~YG~TE~  424 (663)
T 1ry2_A          376 -----------------------SYIENHS--------LKSLRCLGSVGEPIAAEVWEWYSEKIGKNEIPIVDTYWQTES  424 (663)
T ss_dssp             -----------------------TSSSSCC--------CTTCCEEEECSSCCCHHHHHHHHHTTSCSSSCEEECBCCTTT
T ss_pred             -----------------------cccccCC--------cCceEEEEEEcCCCCHHHHHHHHHHhCCCCceEEEeECCccc
Confidence                                   0001111        258999999999999999999999887   899999999999


Q ss_pred             CCceecccC--CCccccCccCCCccCeeEEeeecC-CCCCCCCCCCCCceEEEcc--CCcccccCCCchhhhhcc---cC
Q 006111          421 CGPTTVCFP--DEMCMVGTAGPVSVYSELRLEEVP-EMGYSPLDDPPCGEVCVRG--KTLFSGYYKNPDLTRESI---ID  492 (660)
Q Consensus       421 ~~~~~~~~~--~~~~~~~~~G~~~~~~~v~ivd~~-~~~~~~~~~~~~Gei~v~g--~~~~~gy~~~~~~~~~~~---~~  492 (660)
                      ++.++....  .....++++|.|++|++++|+| + ++..++. .|+.|||+|+|  |+++.|||++++.+.+.|   .+
T Consensus       425 ~~~~~~~~~~~~~~~~~gs~G~p~~g~~v~i~d-~~~g~~v~~-~g~~Gel~i~g~~p~~~~gy~~~~~~~~~~~~~~~~  502 (663)
T 1ry2_A          425 GSHLVTPLAGGVTPMKPGSASFPFFGIDAVVLD-PNTGEELNT-SHAEGVLAVKAAWPSFARTIWKNHDRYLDTYLNPYP  502 (663)
T ss_dssp             CSCSEECCTTTCCCCCTTCCCEECTTCCEEEEC-SSSTTCEEC-SSCEEEEEESSCCTTSCCEETTCHHHHHHHHTSSST
T ss_pred             cCeeeccCCCCCcccCCCccccCcCCCeEEEEc-CCCCCcCCC-CCcceEEEEecCCCchhcccccChHHHHHhhhcCCC
Confidence            987666543  2234568999999999999999 6 5543322 26789999999  589999999999888876   38


Q ss_pred             CccccCceEEECCCCcEEEEeccCCeeEcCCCeeecchhHHHHHhcCcCcceEEEEecCCC---CeEEEEEEcChhhHHH
Q 006111          493 GWFHTGDIGQILPNGVVKIIDRKKNLIKISQGEYVALEYLENVYCVAPIIEDIWVYGDSLK---SMLVAVVVPCEEDTKK  569 (660)
Q Consensus       493 g~~~TGDl~~~~~~G~l~~~GR~~d~i~~~~G~~v~~~~iE~~l~~~p~V~~~~V~~~~~~---~~~~a~v~~~~~~~~~  569 (660)
                      |||+|||+|++|+||+|+++||.||+||+ +|++|+|.|||++|.+||+|.+|+|++.+++   +.++|+|+++++....
T Consensus       503 g~y~TGDlg~~d~dG~l~i~GR~dd~Ik~-~G~rI~~~eIE~~l~~~p~V~ea~Vvg~~~~~~g~~~~a~Vv~~~~~~~~  581 (663)
T 1ry2_A          503 GYYFTGDGAAKDKDGYIWILGRVDDVVNV-SGHRLSTAEIEAAIIEDPIVAECAVVGFNDDLTGQAVAAFVVLKNKSSWS  581 (663)
T ss_dssp             TSEEEEEEEEECTTCCEEECSCTTSCBCS-SSCCBCHHHHHHHHHSSTTEEEEEEECCCCCTTSCCCEEEEEEC------
T ss_pred             CEEEcCCEEEEcCCCCEEEEeecCCEEEE-CCEEcCHHHHHHHHHhCCCcceEEEEEEecCCCCeEEEEEEEEcCCCccc
Confidence            99999999999999999999999999997 7999999999999999999999999998754   4899999998753100


Q ss_pred             HHHHCCCCCcHHHHhccHHHHHHHHHHHHHHHHhCCCCCceeeeEEEEecCCCCCCCCccccccccchHHHHHHHHHHHH
Q 006111          570 WAYSNGHAGSFLELCSLVQLQNYILSELKNAAERNKLRGFEHIKGVILDPRPFDMERDLVTATLKKKRNKLLIYYQVEID  649 (660)
Q Consensus       570 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~l~~~~~p~~i~~~~~~~~~~~~P~t~~GKv~R~~l~~~~~~~i~  649 (660)
                           ..        .+. ..+.+.++|+++++ ..|+.|++|+.|++++      .+|+|++||++|++|++++.++++
T Consensus       582 -----~~--------~~~-~~~~l~~~l~~~l~-~~L~~~~~P~~i~~v~------~lP~T~sGKi~R~~L~~~~~~~~~  640 (663)
T 1ry2_A          582 -----TA--------TDD-ELQDIKKHLVFTVR-KDIGPFAAPKLIILVD------DLPKTRSGKIMRRILRKILAGESD  640 (663)
T ss_dssp             --------------------CCSHHHHHHHHHH-HHTCTTTSCSEEEECS------CCCBCTTSCBCHHHHHHSCC----
T ss_pred             -----cc--------cch-hHHHHHHHHHHHHH-HhCCCCcCCeEEEEcC------CCCCCCccCchHHHHHHHHcCCCC
Confidence                 00        000 00023455555655 6799999999999874      468999999999999999977654


Q ss_pred             HH
Q 006111          650 QL  651 (660)
Q Consensus       650 ~~  651 (660)
                      .+
T Consensus       641 ~~  642 (663)
T 1ry2_A          641 QL  642 (663)
T ss_dssp             --
T ss_pred             CC
Confidence            43

>3ivr_A Putative long-chain-fatty-acid COA ligase; structural genomics, PSI-2, protein S initiative, fatty acid synthesis; HET: GOL; 2.00A {Rhodopseudomonas palustris} SCOP: e.23.1.0

Probab=100.00  E-value=3.7e-73  Score=621.92  Aligned_cols=492  Identities=22%  Similarity=0.271  Sum_probs=326.1

Q ss_pred             CCCcHHHHHHHHHHhCCCCCceeeeccccCCCCCceEEeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEeCCchhHHHHHH
Q 006111           40 DLNTAWDIFSMSVQKYPGNRMLGWRPFVDGKFGPYVWKTYKEVYEEVLQIVSALRASGAEPGCRVGIYGANCPQWVEAME  119 (660)
Q Consensus        40 ~~~ti~~~l~~~a~~~pd~~a~~~~~~~d~~~~~~~~~Ty~ql~~~v~~lA~~L~~~Gl~~gd~V~l~~~n~~e~~~~~l  119 (660)
                      ...|+.++|+++++++||++|+++.   +      +++||+||.++++++|++|++.|+++||+|+++++|++++++++|
T Consensus         4 ~~~tl~~~l~~~a~~~pd~~Al~~~---~------~~~Ty~eL~~~~~~lA~~L~~~Gv~~gd~V~i~~~~~~~~~~~~l   74 (509)
T 3ivr_A            4 HDFTLADVYRRNAALFPDRTAFMVD---G------VRLTHRDYLARAERLASGLLRDGVHTGDRVAILSQNCSEMIELIG   74 (509)
T ss_dssp             TCCCHHHHHHHHHHHSTTSEEEEET---T------EEEEHHHHHHHHHHHHHHHHHTTCCTTCEEEEECCSCHHHHHHHH
T ss_pred             CcCCHHHHHHHHHHHCCCceEEEEC---C------cEEcHHHHHHHHHHHHHHHHHcCCCCCCEEEEEcCCCHHHHHHHH
Confidence            4579999999999999999999875   3      689999999999999999999999999999999999999999999


Q ss_pred             HHHhCCCeEEecCCCCChhHHHHHHhcccceEEEEccchhhhhhccccccccCccEEEEecCCcHHHHHHHhhCCcceee
Q 006111          120 ACNALSLICVPLYDTLGPGAVNFILDHAEIDFVFVQDKKVKELLSPDCRSAQRLRVMVCFTSLTAEQKEMAVQTGIKPYS  199 (660)
Q Consensus       120 A~~~~G~~~vpl~~~~~~~~l~~~l~~~~~~~ii~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~  199 (660)
                      ||+++|++++|+++.++.+++.++++.++++++|++......+.... ........++.+++..              ..
T Consensus        75 A~~~~Ga~~vpl~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~--------------~~  139 (509)
T 3ivr_A           75 AVALIGAILLPVNYRLNADEIAFVLGDGAPSVVVAGTDYRDIVAGVL-PSLGGVKKAYAIGDGS--------------GP  139 (509)
T ss_dssp             HHHHTTCEEEECCTTSCHHHHHHHHHHHCEEEEEECSTTHHHHHHHG-GGCSSCCEEEESSCCC--------------SS
T ss_pred             HHHHhCCEEEecCCCCCHHHHHHHHHhcCceEEEECcchhhhHHhhh-cccCCceEEEEcCCCC--------------cC
Confidence            99999999999999999999999999999999999988766533332 2334555666655421              11


Q ss_pred             HHHHHhcCccCCccCCCCCCCceEEEEecCCCCCCCceeeecchhHHHHhhhhhhhcccccCCCCCCcEEEEecChhHHH
Q 006111          200 WDEFLHLGKVNEMEILPPQPFNICTIMYTSGTSGDPKGVVLTHETIATFVSGVDLFLDQFEDKMTVDDVYLSFLPLAHIL  279 (660)
Q Consensus       200 ~~~~~~~~~~~~~~~~~~~~~~~~~i~~TSGTTG~pK~v~~th~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~pl~~~~  279 (660)
                      +.++...............++++++|+|||||||.||+|+++|+++.+.+......+     ++..+|++++.+|++|.+
T Consensus       140 ~~~~~~~~~~~~~~~~~~~~~d~a~i~~TSGTTG~PKgV~~sh~~l~~~~~~~~~~~-----~~~~~d~~l~~~p~~~~~  214 (509)
T 3ivr_A          140 FAPFKDLASDTPFSAPEFGAADGFVIIHTAAVGGRPRGALISQGNLLIAQSSLVDAW-----RLTEADVNLGMLPLFHVT  214 (509)
T ss_dssp             CEEGGGTCCCSCCCCCCCCTTSEEEEEEEEC--CCEEEEEEEHHHHHHHHHHHHHHT-----TCCTTCEEEECSCTTSHH
T ss_pred             hhhHhhccCCCCCCcCCCCccccEEEEeCCCCCCCCcEEEEehHHHHHHHHHHHHhh-----CCCCCcEEEEeCCCcchh
Confidence            222222121223334456789999999999999999999999999999998887777     889999999999999999


Q ss_pred             HHHHHHHHhhc-CcEEEEecCChhhHHHHhhhhcCeEEEechHHHHHHHHHHHHHHHhhchHHHHHHHHHHHHHHHHHhh
Q 006111          280 DRVIEEYFFRR-GASVGYYHGDLNALRDDLMELKPTLLAGVPRVFEKIHEGIKKALEELRPLRRRIFDALYKYKLAWMNM  358 (660)
Q Consensus       280 g~~~~l~~l~~-G~~~v~~~~~~~~~~~~i~~~~~t~~~~~p~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  358 (660)
                      ++...+.++.. |+++++...++..+++.|+++++|+++++|+++..+++...                           
T Consensus       215 g~~~~~~~~~~~g~~~~~~~~~~~~~~~~i~~~~~t~~~~~p~~~~~l~~~~~---------------------------  267 (509)
T 3ivr_A          215 GLGLMLTLQQAGGASVIAAKFDPAQAARDIEAHKVTVMAEFAPMLGNILDQAA---------------------------  267 (509)
T ss_dssp             HHHHHHHHHHHTCEEEECSSCCHHHHHHHHHHHTCCEEEEETTHHHHHHHHCC---------------------------
T ss_pred             HHHHHHHHHHhCCcEEEecccCHHHHHHHHHHHCCcEEEecHHHHHHHHhccc---------------------------
Confidence            99887665544 44444444499999999999999999999999999875320                           


Q ss_pred             CCCCCCcchhhhHHHHHHHHHHhCCcEeEEEEccCCCCHHHHHHHHHhc-CCceeeecCCCCCCCceecccCCCccccCc
Q 006111          359 GYKQREASPLADLLAFRKVKARLGGRLRLVISGGAPLSTEVEEFLRVTC-CAFLVQGYGLTETCGPTTVCFPDEMCMVGT  437 (660)
Q Consensus       359 ~~~~~~~~~~~~~~~~~~~~~~~~~~lr~i~~~G~~l~~~~~~~~~~~~-~~~v~~~YG~tE~~~~~~~~~~~~~~~~~~  437 (660)
                                  ..++        +++|.++.+|++   +..+.+.+.+ ++.+++.||+||++++++.......  ..+
T Consensus       268 ------------~~~l--------~~lr~~~~~g~~---~~~~~~~~~~~~~~~~~~YG~TE~~~~~~~~~~~~~--~~~  322 (509)
T 3ivr_A          268 ------------PAQL--------ASLRAVTGLDTP---ETIERFEATCPNATFWATFGQSETSGLSTFAPYRDR--PKS  322 (509)
T ss_dssp             ------------GGGG--------TTCCEEEEECCH---HHHHHHHHHCTTCEEEEEEEEGGGTEEEEEEEGGGS--TTS
T ss_pred             ------------ccch--------hhhheecccCCh---HHHHHHHHhcCCCeEEcccCccccccccccCccccC--CCc
Confidence                        0011        489999999987   7888888888 8999999999999987776554322  246


Q ss_pred             cCCCccCeeEEeeecCCCCCCCCCCCCCceEEEccCCcccccCCCchhhhhcccCCccccCceEEECCCCcEEEEecc--
Q 006111          438 AGPVSVYSELRLEEVPEMGYSPLDDPPCGEVCVRGKTLFSGYYKNPDLTRESIIDGWFHTGDIGQILPNGVVKIIDRK--  515 (660)
Q Consensus       438 ~G~~~~~~~v~ivd~~~~~~~~~~~~~~Gei~v~g~~~~~gy~~~~~~~~~~~~~g~~~TGDl~~~~~~G~l~~~GR~--  515 (660)
                      +|+|+++++++|+| +++.  +++.|+.|||+|+||+++.||+++++.+.+.|.+|||+|||+|++|+||++++.||.  
T Consensus       323 ~G~p~~~~~~~i~d-~~~~--~~~~g~~GEl~v~g~~~~~gY~~~~~~t~~~f~~g~~~TGDl~~~~~dG~l~~~GR~d~  399 (509)
T 3ivr_A          323 AGRPLFWRTVAVVD-AEDR--PLPPGEVGEIVLRGPTVFKGYWNNAAATQHAFRNGWHHTGDMGRFDADGYLFYAGRAPE  399 (509)
T ss_dssp             CCEECTTCEEEEEC-TTSC--BCCTTCCEEEEEESTTSCCEETTCHHHHHHHTGGGSEEEEEEEEECTTSCEEEEEEC--
T ss_pred             ccccCCCcEEEEEC-CCCC--CCCCCCceEEEEecCCccccccCCHHHhHHHhhcCCcccccEEEECCCceEEEeCCCCc
Confidence            99999999999999 7665  445668999999999999999999999999999999999999999999999999999  


Q ss_pred             CCeeEcCCCeeecchhHHHHHhcCcCcceEEEEecCCC---CeEEEEEEcChhhHHHHHHHCCCCCcHHHHhccHHHHHH
Q 006111          516 KNLIKISQGEYVALEYLENVYCVAPIIEDIWVYGDSLK---SMLVAVVVPCEEDTKKWAYSNGHAGSFLELCSLVQLQNY  592 (660)
Q Consensus       516 ~d~i~~~~G~~v~~~~iE~~l~~~p~V~~~~V~~~~~~---~~~~a~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  592 (660)
                      +|+||+ +|++|+|.+||++|.+||+|.+|+|++.+++   +.++|+|++.++..        .        .       
T Consensus       400 ~d~ik~-~G~~v~p~eiE~~l~~~p~V~~a~vv~~~~~~~~~~~~a~v~~~~~~~--------~--------~-------  455 (509)
T 3ivr_A          400 KELIKT-GGENVYPAEVEGALKQHPAIADAVVIGVPDPQWSEAIKAVCVCKPGES--------I--------A-------  455 (509)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             ceeEEE-CCEEECHHHHHHHHHhCCCceeEEEEeccccccCcEEEEEEEeCCCCC--------C--------C-------
Confidence            999996 8999999999999999999999999987754   37888888876531        0        0       


Q ss_pred             HHHHHHHHHHhCCCCCceeeeEEEEecCCCCCCCCccccccccchHHHHHHHHHH
Q 006111          593 ILSELKNAAERNKLRGFEHIKGVILDPRPFDMERDLVTATLKKKRNKLLIYYQVE  647 (660)
Q Consensus       593 ~~~~l~~~~~~~~l~~~~~p~~i~~~~~~~~~~~~P~t~~GKv~R~~l~~~~~~~  647 (660)
                       .++|+++++ ..||.|++|+.|+++      +.+|+|++||++|++|++++++.
T Consensus       456 -~~~l~~~l~-~~L~~~~~P~~i~~v------~~lP~t~~GKidr~~Lr~~~~~~  502 (509)
T 3ivr_A          456 -ADALAEFVA-SLIARYKKPKHVVFV------EALPKDAKGAIDRAAVKTAHGQE  502 (509)
T ss_dssp             -------------------------------------------------------
T ss_pred             -HHHHHHHHH-hhCcccCCCcEEEEe------cCCCCCCCCCccHHHHHHHHhhc
Confidence             123444444 789999999999987      44689999999999999988664

>3e7w_A D-alanine--poly(phosphoribitol) ligase subunit 1; DLTA, non-ribosomal peptide synthetase, NRPS, adenylation domain, D-alanylation; HET: AMP; 2.28A {Bacillus subtilis} PDB: 3e7x_A*

Probab=100.00  E-value=5e-72  Score=612.96  Aligned_cols=487  Identities=18%  Similarity=0.204  Sum_probs=406.4

Q ss_pred             CcHHHHHHHHHHhCCCCCceeeeccccCCCCCceEEeHHHHHHHHHHHHHHHHHc-CCCCCCEEEEEeCCchhHHHHHHH
Q 006111           42 NTAWDIFSMSVQKYPGNRMLGWRPFVDGKFGPYVWKTYKEVYEEVLQIVSALRAS-GAEPGCRVGIYGANCPQWVEAMEA  120 (660)
Q Consensus        42 ~ti~~~l~~~a~~~pd~~a~~~~~~~d~~~~~~~~~Ty~ql~~~v~~lA~~L~~~-Gl~~gd~V~l~~~n~~e~~~~~lA  120 (660)
                      +|+.+.|+++|+++||++|+++.   +      +++||+||.++++++|++|.+. |.++||+|+++++|++++++++||
T Consensus         1 m~l~~~l~~~a~~~p~~~Al~~~---~------~~~Ty~eL~~~~~~~A~~L~~~~~~~~g~~V~i~~~n~~~~~~~~lA   71 (511)
T 3e7w_A            1 MKLLHAIQTHAETYPQTDAFRSQ---G------QSLTYQELWEQSDRAAAAIQKRISGEKKSPILVYGHMEPHMIVSFLG   71 (511)
T ss_dssp             CCHHHHHHHHHHHSTTSEEEEET---T------EEEEHHHHHHHHHHHHHHHTTTSCSSSCCCEEEEESSCHHHHHHHHH
T ss_pred             CcHHHHHHHHHHHCCCCeEEEcC---C------ceeeHHHHHHHHHHHHHHHHHhcCCCCCCeEEEEecCCHHHHHHHHH
Confidence            47899999999999999999875   3      6899999999999999999885 889999999999999999999999


Q ss_pred             HHhCCCeEEecCCCCChhHHHHHHhcccceEEEEccchhhhhhccccccccCccEEEEecCCcHHHHHHHhhCCcceeeH
Q 006111          121 CNALSLICVPLYDTLGPGAVNFILDHAEIDFVFVQDKKVKELLSPDCRSAQRLRVMVCFTSLTAEQKEMAVQTGIKPYSW  200 (660)
Q Consensus       121 ~~~~G~~~vpl~~~~~~~~l~~~l~~~~~~~ii~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~  200 (660)
                      |+++|++++|+++.++.+++.++++.++++++|++..........                            .....++
T Consensus        72 ~~~~G~~~vpl~~~~~~~~l~~~l~~~~~~~li~~~~~~~~~~~~----------------------------~~~~~~~  123 (511)
T 3e7w_A           72 SVKAGHPYIPVDLSIPSERIAKIIESSGAELLIHAAGLSIDAVGQ----------------------------QIQTVSA  123 (511)
T ss_dssp             HHHHTCCEEEEETTSCHHHHHHHHHHHTCCEEEESSSCCTTCCCC----------------------------SSCEEEH
T ss_pred             HHHhCCEEEecCCCChHHHHHHHHHhCCCCEEEecccccchhccc----------------------------ccceecH
Confidence            999999999999999999999999999999999976532211100                            0112345


Q ss_pred             HHHHhcCccCCccCCCCCCCceEEEEecCCCCCCCceeeecchhHHHHhhhhhhhcccccCCCCCCcEEEEecChhHHHH
Q 006111          201 DEFLHLGKVNEMEILPPQPFNICTIMYTSGTSGDPKGVVLTHETIATFVSGVDLFLDQFEDKMTVDDVYLSFLPLAHILD  280 (660)
Q Consensus       201 ~~~~~~~~~~~~~~~~~~~~~~~~i~~TSGTTG~pK~v~~th~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~pl~~~~g  280 (660)
                      .++...............++++++|+|||||||.||+|++||+++.+.+......+     ++..++++++.+|++|.++
T Consensus       124 ~~~~~~~~~~~~~~~~~~~~~~a~i~~TSGTTG~PKgV~~sh~~l~~~~~~~~~~~-----~~~~~d~~l~~~p~~~~~~  198 (511)
T 3e7w_A          124 EELLENEGGSVSQDQWVKEHETFYIIYTSGSTGNPKGVQISAANLQSFTDWICADF-----PVSGGKIFLNQAPFSFDLS  198 (511)
T ss_dssp             HHHHTSCSCCCCGGGSCCTTSEEEEEEECCTTSSCEEEEEEHHHHHHHHHHHHHHS-----TTTTTCEEEECSCTTSTHH
T ss_pred             hhhhccccCCccccccCCCCCeEEEEECCCCCCCCCEEEEcHHHHHHHHHHHHHhc-----CCCccceEEEeCCccHHHH
Confidence            55554433333333445789999999999999999999999999999998877776     7889999999999999999


Q ss_pred             HHHHHHHhhcCcEEEEecC----ChhhHHHHhhhhcCeEEEechHHHHHHHHHHHHHHHhhchHHHHHHHHHHHHHHHHH
Q 006111          281 RVIEEYFFRRGASVGYYHG----DLNALRDDLMELKPTLLAGVPRVFEKIHEGIKKALEELRPLRRRIFDALYKYKLAWM  356 (660)
Q Consensus       281 ~~~~l~~l~~G~~~v~~~~----~~~~~~~~i~~~~~t~~~~~p~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  356 (660)
                      +...+.+++.|+++++.+.    ++..+++.++++++|+++++|+++..++....                         
T Consensus       199 ~~~~~~~l~~G~~~~~~~~~~~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~-------------------------  253 (511)
T 3e7w_A          199 VMDLYPCLQSGGTLHCVTKDAVNKPKVLFEELKKSGLNVWTSTPSFVQMCLMDPG-------------------------  253 (511)
T ss_dssp             HHHHHHHHHTTCEEEECCHHHHHSHHHHHHHHHHHCCSEEEECHHHHHHHHTSTT-------------------------
T ss_pred             HHHHHHHHhcCCEEEEcChhhhcCHHHHHHHHHHcCCcEEEecHHHHHHHHhccc-------------------------
Confidence            8888889999999998864    78999999999999999999999988754210                         


Q ss_pred             hhCCCCCCcchhhhHHHHHHHHHHhCCcEeEEEEccCCCCHHHHHHHHHhc-CCceeeecCCCCCCCceecccCCC----
Q 006111          357 NMGYKQREASPLADLLAFRKVKARLGGRLRLVISGGAPLSTEVEEFLRVTC-CAFLVQGYGLTETCGPTTVCFPDE----  431 (660)
Q Consensus       357 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~lr~i~~~G~~l~~~~~~~~~~~~-~~~v~~~YG~tE~~~~~~~~~~~~----  431 (660)
                                  ...        ...+++|.+++||+++++++.+.+.+.+ ++++++.||+||+++.++......    
T Consensus       254 ------------~~~--------~~~~~l~~~~~~G~~l~~~~~~~~~~~~~~~~i~~~YG~TE~~~~~~~~~~~~~~~~  313 (511)
T 3e7w_A          254 ------------FSQ--------DLLPHADTFMFCGEVLPVSVAKALLERFPKAKIFNTYGPTEATVAVTSVEITNDVIS  313 (511)
T ss_dssp             ------------CST--------TTCTTCCEEEECSSCCCHHHHHHHHHHCTTCEEEECCCCGGGSSCSEEEEECHHHHT
T ss_pred             ------------ccc--------ccCCcccEEEEecCCCCHHHHHHHHHHCCCcEEEeCcccchheeeeeEEeccccccc
Confidence                        000        1124899999999999999999999988 899999999999998776544322    


Q ss_pred             ccccCccCCCccCeeEEeeecCCCCCCCCCCCCCceEEEccCCcccccCCCchhhhhcc--cCC--ccccCceEEECCCC
Q 006111          432 MCMVGTAGPVSVYSELRLEEVPEMGYSPLDDPPCGEVCVRGKTLFSGYYKNPDLTRESI--IDG--WFHTGDIGQILPNG  507 (660)
Q Consensus       432 ~~~~~~~G~~~~~~~v~ivd~~~~~~~~~~~~~~Gei~v~g~~~~~gy~~~~~~~~~~~--~~g--~~~TGDl~~~~~~G  507 (660)
                      .....++|.|+++++++|+| +++.  +++.|+.|||+|+||+++.||+++++.+.+.|  .+|  ||+|||+|++ +||
T Consensus       314 ~~~~~~~G~~~~~~~~~i~d-~~g~--~~~~g~~GEl~v~g~~v~~GY~~~~~~t~~~f~~~~g~~~~~TGDlg~~-~dG  389 (511)
T 3e7w_A          314 RSESLPVGFAKPDMNIFIMD-EEGQ--PLPEGEKGEIVIAGPSVSRGYLGEPELTEKAFFSHEGQWAYRTGDAGFI-QDG  389 (511)
T ss_dssp             TCSSCCCBEECTTCEEEEEC-TTSC--BCCTTCCEEEEEESTTSCCCBTTCHHHHHHHEEESSSSEEEEEEEEEEE-ETT
T ss_pred             cCCcCCCcceeCCCEEEEEC-CCCC--CCCCCCceEEEEecCccChhhCCCcccchhhhcCCCCCEEEeCCCeEEc-cCC
Confidence            12336799999999999999 7765  44566899999999999999999999999998  344  8999999999 599


Q ss_pred             cEEEEeccCCeeEcCCCeeecchhHHHHHhcCcCcceEEEEecCCC---CeEEEEEEcChhhHHHHHHHCCCCCcHHHHh
Q 006111          508 VVKIIDRKKNLIKISQGEYVALEYLENVYCVAPIIEDIWVYGDSLK---SMLVAVVVPCEEDTKKWAYSNGHAGSFLELC  584 (660)
Q Consensus       508 ~l~~~GR~~d~i~~~~G~~v~~~~iE~~l~~~p~V~~~~V~~~~~~---~~~~a~v~~~~~~~~~~~~~~~~~~~~~~~~  584 (660)
                      +++++||.||+|++ +|++|+|.+||++|.+||+|.+|+|++.+++   +.++|+|++.++..          .      
T Consensus       390 ~l~~~GR~~d~ik~-~G~~v~p~eIE~~l~~~p~V~~a~vv~~~~~~~~~~~~a~vv~~~~~~----------~------  452 (511)
T 3e7w_A          390 QIFCQGRLDFQIKL-HGYRMELEEIEFHVRQSQYVRSAVVIPYQPNGTVEYLIAAIVPEEHEF----------E------  452 (511)
T ss_dssp             EEEEEEESSSEEEE-TTEEEEHHHHHHHHHHSTTEEEEEEEEECSSSSCCEEEEEEEECCCCC----------S------
T ss_pred             eEEEEccccCEEEE-CCEEeCHHHHHHHHHhCCCcceEEEEEEcCCCCceEEEEEEEeccccc----------c------
Confidence            99999999999997 8999999999999999999999999986644   48899999887530          0      


Q ss_pred             ccHHHHHHHHHHHHHHHHhCCCCCceeeeEEEEecCCCCCCCCccccccccchHHHHHHHHHH
Q 006111          585 SLVQLQNYILSELKNAAERNKLRGFEHIKGVILDPRPFDMERDLVTATLKKKRNKLLIYYQVE  647 (660)
Q Consensus       585 ~~~~~~~~~~~~l~~~~~~~~l~~~~~p~~i~~~~~~~~~~~~P~t~~GKv~R~~l~~~~~~~  647 (660)
                      ..    ..+.++|+++++ .+||.|++|+.++++      +.+|+|++||++|++|++++...
T Consensus       453 ~~----~~~~~~l~~~l~-~~L~~~~~P~~~~~v------~~lP~t~~GKi~R~~L~~~~~~~  504 (511)
T 3e7w_A          453 KE----FQLTSAIKKELA-ASLPAYMIPRKFIYQ------DHIQMTANGKIDRKRIGEEVLVR  504 (511)
T ss_dssp             SH----HHHHHHHHHHHH-HHSCGGGSCSEEEEC------SCCCBCTTSCBCHHHHHHHHHHH
T ss_pred             ch----hhHHHHHHHHHH-hhCchhhCCeeEEEe------ccCCCCCCcCccHHHHHhHHhhh
Confidence            11    123345555554 679999999999987      44699999999999999988653

>3fce_A D-alanine--poly(phosphoribitol) ligase subunit 1; DLTA, AMP-forming domain, adenylation, D-alanine protein ligase, ATP complex; HET: ATP; 1.90A {Bacillus cereus} PDB: 3fcc_A* 3dhv_A*

Probab=100.00  E-value=2.2e-72  Score=616.29  Aligned_cols=488  Identities=19%  Similarity=0.198  Sum_probs=400.6

Q ss_pred             CcHHHHHHHHHHhCCCCCceeeeccccCCCCCceEEeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEeCCchhHHHHHHHH
Q 006111           42 NTAWDIFSMSVQKYPGNRMLGWRPFVDGKFGPYVWKTYKEVYEEVLQIVSALRASGAEPGCRVGIYGANCPQWVEAMEAC  121 (660)
Q Consensus        42 ~ti~~~l~~~a~~~pd~~a~~~~~~~d~~~~~~~~~Ty~ql~~~v~~lA~~L~~~Gl~~gd~V~l~~~n~~e~~~~~lA~  121 (660)
                      +|+.++|+++++++||++|+++.   +      +++||+||.++++++|++|.+.|+++||+|+++++|++++++++|||
T Consensus         1 m~l~~~l~~~a~~~p~~~A~~~~---~------~~~Ty~el~~~~~~lA~~L~~~g~~~gd~V~i~~~n~~e~~~~~la~   71 (512)
T 3fce_A            1 MKLLEQIEKWAAETPDQTAFVWR---D------AKITYKQLKEDSDALAHWISSEYPDDRSPIMVYGHMQPEMIINFLGC   71 (512)
T ss_dssp             CCHHHHHHHHHHHSTTSEEEEET---T------EEEEHHHHHHHHHHHHHHHHHHSTTCCCCEEEEESSCHHHHHHHHHH
T ss_pred             CcHHHHHHHHHHHCCCceEEEeC---C------ceEEHHHHHHHHHHHHHHHHHhCCCCCCEEEEEeCCCHHHHHHHHHH
Confidence            47899999999999999999876   3      58999999999999999999999999999999999999999999999


Q ss_pred             HhCCCeEEecCCCCChhHHHHHHhcccceEEEEccchhhhhhccccccccCccEEEEecCCcHHHHHHHhhCCcceeeHH
Q 006111          122 NALSLICVPLYDTLGPGAVNFILDHAEIDFVFVQDKKVKELLSPDCRSAQRLRVMVCFTSLTAEQKEMAVQTGIKPYSWD  201 (660)
Q Consensus       122 ~~~G~~~vpl~~~~~~~~l~~~l~~~~~~~ii~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~  201 (660)
                      +++|++++|+++.++.+++.++++.++++++|++........        . ..++..+                  .+.
T Consensus        72 ~~~G~v~vpl~~~~~~~~l~~il~~~~~~~~i~~~~~~~~~~--------~-~~~~~~~------------------~~~  124 (512)
T 3fce_A           72 VKAGHAYIPVDLSIPADRVQRIAENSGAKLLLSATAVTVTDL--------P-VRIVSED------------------NLK  124 (512)
T ss_dssp             HHTTCCEEEEETTSCHHHHHHHHHHSCCCEEEESSCCCSSCC--------S-SEEEETH------------------HHH
T ss_pred             HHhCCEEEeeCCCCcHHHHHHHHHhcCCCEEEecCccccccc--------c-cceechh------------------hhh
Confidence            999999999999999999999999999999999754321110        0 0111110                  111


Q ss_pred             HHHhc-CccCCccCCCCCCCceEEEEecCCCCCCCceeeecchhHHHHhhhhhhhcccccCCCCCCcEEEEecChhHHHH
Q 006111          202 EFLHL-GKVNEMEILPPQPFNICTIMYTSGTSGDPKGVVLTHETIATFVSGVDLFLDQFEDKMTVDDVYLSFLPLAHILD  280 (660)
Q Consensus       202 ~~~~~-~~~~~~~~~~~~~~~~~~i~~TSGTTG~pK~v~~th~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~pl~~~~g  280 (660)
                      .+... ......+.....++++++|+|||||||.||+|++||+++.+.+......+     ++..+|++++++|++|.++
T Consensus       125 ~~~~~~~~~~~~~~~~~~~~d~a~i~~TSGTTG~PKgv~~th~~l~~~~~~~~~~~-----~~~~~d~~l~~~p~~~~~~  199 (512)
T 3fce_A          125 DIFFTHKGNTPNPEHAVKGDENFYIIYTSGSTGNPKGVQITYNCLVSFTKWAVEDF-----NLQTGQVFLNQAPFSFDLS  199 (512)
T ss_dssp             HHHHHTTTCCCCGGGSCCTTSEEEEEEECC----CEEEEEEHHHHHHHHHHHHHHT-----TCCSSCEEEECSCTTSGGG
T ss_pred             hhcccccccCCCccccCCCCCeEEEEECCCCCCCCceEEEehHHHHHHHHHHHHhc-----CCCCCCEEEEeCCccHhHH
Confidence            11111 11122233456789999999999999999999999999999998877777     8899999999999999999


Q ss_pred             HHHHHHHhhcCcEEEEecC----ChhhHHHHhhhhcCeEEEechHHHHHHHHHHHHHHHhhchHHHHHHHHHHHHHHHHH
Q 006111          281 RVIEEYFFRRGASVGYYHG----DLNALRDDLMELKPTLLAGVPRVFEKIHEGIKKALEELRPLRRRIFDALYKYKLAWM  356 (660)
Q Consensus       281 ~~~~l~~l~~G~~~v~~~~----~~~~~~~~i~~~~~t~~~~~p~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  356 (660)
                      +...+.+++.|+++++.+.    ++..+++.++++++|+++++|+++..++....                         
T Consensus       200 ~~~~~~~l~~G~~~~~~~~~~~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~-------------------------  254 (512)
T 3fce_A          200 VMDIYPSLVTGGTLWAIDKDMIARPKDLFASLEQSDIQVWTSTPSFAEMCLMEAS-------------------------  254 (512)
T ss_dssp             HHHHHHHHHTTCEEEECCHHHHHSHHHHHHHHHHHCCCEEEECHHHHHHHTTSTT-------------------------
T ss_pred             HHHHHHHHhCCCEEEECCHHHhhCHHHHHHHHHHcCCcEEEecHHHHHHHHhhcc-------------------------
Confidence            8888889999999999874    88999999999999999999999988753210                         


Q ss_pred             hhCCCCCCcchhhhHHHHHHHHHHhCCcEeEEEEccCCCCHHHHHHHHHhc-CCceeeecCCCCCCCceecccCCC----
Q 006111          357 NMGYKQREASPLADLLAFRKVKARLGGRLRLVISGGAPLSTEVEEFLRVTC-CAFLVQGYGLTETCGPTTVCFPDE----  431 (660)
Q Consensus       357 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~lr~i~~~G~~l~~~~~~~~~~~~-~~~v~~~YG~tE~~~~~~~~~~~~----  431 (660)
                                  ....        .++++|.+++||+++++++.+.+.+.+ ++++++.||+||+++.++......    
T Consensus       255 ------------~~~~--------~~~~lr~~~~~G~~l~~~~~~~~~~~~~~~~i~~~YG~TE~~~~~~~~~~~~~~~~  314 (512)
T 3fce_A          255 ------------FSES--------MLPNMKTFLFCGEVLPNEVARKLIERFPKATIMNTYGPTEATVAVTGIHVTEEVLD  314 (512)
T ss_dssp             ------------CSTT--------TSTTCCEEEECSSCCCHHHHHHHHHHCTTCEEEEEECCGGGSSCSEEEECCHHHHH
T ss_pred             ------------ccch--------hCccccEEEEecCcCCHHHHHHHHHHCCCCEEEeCcccChhhhheeeEEecccccc
Confidence                        0111        124899999999999999999999988 899999999999998877554332    


Q ss_pred             ccccCccCCCccCeeEEeeecCCCCCCCCCCCCCceEEEccCCcccccCCCchhhhhccc----CCccccCceEEECCCC
Q 006111          432 MCMVGTAGPVSVYSELRLEEVPEMGYSPLDDPPCGEVCVRGKTLFSGYYKNPDLTRESII----DGWFHTGDIGQILPNG  507 (660)
Q Consensus       432 ~~~~~~~G~~~~~~~v~ivd~~~~~~~~~~~~~~Gei~v~g~~~~~gy~~~~~~~~~~~~----~g~~~TGDl~~~~~~G  507 (660)
                      .....++|.|+++++++++| +++..  ++.|+.|||+|+||+++.||+++++.+.+.|.    +|||+|||+|++ +||
T Consensus       315 ~~~~~~~G~~~~~~~~~i~d-~~g~~--~~~g~~GEl~v~g~~v~~GY~~~~~~t~~~f~~~~~~~~~~TGDlg~~-~dG  390 (512)
T 3fce_A          315 QYKSLPVGYCKSDCRLLIMK-EDGTI--APDGEKGEIVIVGPSVSVGYLGSPELTEKAFTMIDGERAYKTGDAGYV-ENG  390 (512)
T ss_dssp             HCSSCCCEEECTTCEEEEEC-SSSCB--CCTTSCEEEEEESTTSCSCBTTCHHHHHHHEEEETTEEEEEEEEEEEE-ETT
T ss_pred             ccCCCccccccCCcEEEEEC-CCCCC--CCCCCeEEEEEeccccChhhcCCchhhhhccccCCCCEEEeCCceEEe-cCC
Confidence            12346899999999999999 76654  44568999999999999999999999999983    459999999999 799


Q ss_pred             cEEEEeccCCeeEcCCCeeecchhHHHHHhcCcCcceEEEEecCCC---CeEEEEEEcChhhHHHHHHHCCCCCcHHHHh
Q 006111          508 VVKIIDRKKNLIKISQGEYVALEYLENVYCVAPIIEDIWVYGDSLK---SMLVAVVVPCEEDTKKWAYSNGHAGSFLELC  584 (660)
Q Consensus       508 ~l~~~GR~~d~i~~~~G~~v~~~~iE~~l~~~p~V~~~~V~~~~~~---~~~~a~v~~~~~~~~~~~~~~~~~~~~~~~~  584 (660)
                      ++++.||.||+|++ +|++|+|.+||++|.+||+|.+|+|++.+++   +.++|+|++.++.          ..      
T Consensus       391 ~l~i~GR~~d~ik~-~G~~v~p~eIE~~l~~~p~V~~a~vv~~~~~~~~~~~~a~vv~~~~~----------~~------  453 (512)
T 3fce_A          391 LLFYNGRLDFQIKL-HGYRMELEEIEHHLRACSYVEGAVIVPIKKGEKYDYLLAVVVPGEHS----------FE------  453 (512)
T ss_dssp             EEEEEEEGGGCEEE-TTEEECHHHHHHHHHHSTTEEEEEEEEEEETTEEEEEEEEEEECSCC----------CS------
T ss_pred             EEEEecccCCEEEE-CCEEECHHHHHHHHHhCCCcceEEEEEEecCCCceEEEEEEecCCcc----------cc------
Confidence            99999999999997 8999999999999999999999999986544   3788999887642          00      


Q ss_pred             ccHHHHHHHHHHHHHHHHhCCCCCceeeeEEEEecCCCCCCCCccccccccchHHHHHHHHHH
Q 006111          585 SLVQLQNYILSELKNAAERNKLRGFEHIKGVILDPRPFDMERDLVTATLKKKRNKLLIYYQVE  647 (660)
Q Consensus       585 ~~~~~~~~~~~~l~~~~~~~~l~~~~~p~~i~~~~~~~~~~~~P~t~~GKv~R~~l~~~~~~~  647 (660)
                      ..    ..+.++|+++++ .+||.|++|+.|+++      +.+|+|++||++|++|++.|.++
T Consensus       454 ~~----~~~~~~l~~~l~-~~L~~~~~P~~~~~~------~~lP~t~~GKi~R~~L~~~~~~~  505 (512)
T 3fce_A          454 KE----FKLTSAIKKELN-ERLPNYMIPRKFMYQ------SSIPMTPNGKVDRKKLLSEVTAL  505 (512)
T ss_dssp             SH----HHHHHHHHHHHH-TTSCGGGSCSEEEEC------SCCCBCTTSSBCHHHHHHHHHC-
T ss_pred             ch----hhhHHHHHHHHH-hhCchhcCCeEEEEe------cccCCCCCcChHHHHHHhhhhhc
Confidence            11    123345666665 789999999999986      45699999999999999988653

>2v7b_A Benzoate-coenzyme A ligase; benzoate oxidation, benzoate COA ligase; 1.84A {Burkholderia xenovorans}

Probab=100.00  E-value=1.5e-71  Score=612.13  Aligned_cols=504  Identities=21%  Similarity=0.217  Sum_probs=397.8

Q ss_pred             CCCCCCCcHHHHHHHHHHhCCCCCceeeeccccCCCCCceEEeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEeCCchhHH
Q 006111           36 SVDSDLNTAWDIFSMSVQKYPGNRMLGWRPFVDGKFGPYVWKTYKEVYEEVLQIVSALRASGAEPGCRVGIYGANCPQWV  115 (660)
Q Consensus        36 ~~~~~~~ti~~~l~~~a~~~pd~~a~~~~~~~d~~~~~~~~~Ty~ql~~~v~~lA~~L~~~Gl~~gd~V~l~~~n~~e~~  115 (660)
                      ..|..++++.++|+++++ +||++|+++.   +      +++||+||.++++++|++|++.|+++||+|+++++|+++++
T Consensus        18 ~~p~~~~~~~~~l~~~~~-~p~~~A~~~~---~------~~~Ty~el~~~~~~lA~~L~~~Gv~~gd~V~i~~~n~~~~~   87 (529)
T 2v7b_A           18 APPALFNFAAYLFRLNET-RAGKTAYIDD---T------GSTTYGELEERARRFASALRTLGVHPEERILLVMLDTVALP   87 (529)
T ss_dssp             ----CCCHHHHHHHHTGG-GTTSEEEECS---S------CEEEHHHHHHHHHHHHHHHHHTTCCTTCEEEEECCSSTHHH
T ss_pred             cCccceeHHHHHHHhhhc-cCCceEEEeC---C------CCccHHHHHHHHHHHHHHHHHcCCCCCCEEEEEcCCcHHHH
Confidence            345677889999999999 9999999864   3      48999999999999999999999999999999999999999


Q ss_pred             HHHHHHHhCCCeEEecCCCCChhHHHHHHhcccceEEEEccchhhhhhccccccccCc-cEEEEecCCcHHHHHHHhhCC
Q 006111          116 EAMEACNALSLICVPLYDTLGPGAVNFILDHAEIDFVFVQDKKVKELLSPDCRSAQRL-RVMVCFTSLTAEQKEMAVQTG  194 (660)
Q Consensus       116 ~~~lA~~~~G~~~vpl~~~~~~~~l~~~l~~~~~~~ii~~~~~~~~~~~~~~~~~~~~-~~i~~~~~~~~~~~~~~~~~~  194 (660)
                      +++|||+++|++++|+++.++.+++.+++++++++++|++......+..... ..... ..++..+....        ..
T Consensus        88 ~~~lA~~~~G~~~vpl~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~--------~~  158 (529)
T 2v7b_A           88 VAFLGALYAGVVPVVANTLLTPADYVYMLTHSHARAVIASGALVQNVTQALE-SAEHDGCQLIVSQPRES--------EP  158 (529)
T ss_dssp             HHHHHHHHHTCEEEECCTTCCHHHHHHHHHHHTCSEEEEEGGGHHHHHHHHH-CC---CCEEEEECC-------------
T ss_pred             HHHHHHHHcCceEEecCcccCHHHHHHHHhccCCeEEEechhhhhHHHHHHh-hccccCceEEEeccccc--------cc
Confidence            9999999999999999999999999999999999999999876654432211 11122 33444333210        00


Q ss_pred             cceeeHHHHHhcCccCCccCCCCCCCceEEEEecCCCCCCCceeeecchhH-HHHhhhhhhhcccccCCCCCCcEEEEec
Q 006111          195 IKPYSWDEFLHLGKVNEMEILPPQPFNICTIMYTSGTSGDPKGVVLTHETI-ATFVSGVDLFLDQFEDKMTVDDVYLSFL  273 (660)
Q Consensus       195 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~TSGTTG~pK~v~~th~~l-~~~~~~~~~~~~~~~~~~~~~~~~l~~~  273 (660)
                      .....+.++..... .........++++++++|||||||.||+|++||+++ .+........+     ++..++++++.+
T Consensus       159 ~~~~~~~~~~~~~~-~~~~~~~~~~~d~a~i~~TSGTTG~PKgv~~sh~~l~~~~~~~~~~~~-----~~~~~d~~~~~~  232 (529)
T 2v7b_A          159 RLAPLFEELIDAAA-PAAKAAATGCDDIAFWLYSSGSTGKPKGTVHTHANLYWTAELYAKPIL-----GIAENDVVFSAA  232 (529)
T ss_dssp             -CCCBHHHHHHTSC-CCSSCCCCCTTSEEEEEEC-----CCCEEEEEHHHHHHHHHHTCCCCC-----CCCTTCEEEESS
T ss_pred             ccccchhhhhccCC-CcccccCCCCCCeEEEEECCCCCCCCceEEEEhhHHHHHHHHHhhhcc-----CCCCCcEEEEee
Confidence            01124555554321 122233457899999999999999999999999999 56655544444     788999999999


Q ss_pred             ChhHHHHHHH-HHHHhhcCcEEEEec-C-ChhhHHHHhhhhcCeEEEechHHHHHHHHHHHHHHHhhchHHHHHHHHHHH
Q 006111          274 PLAHILDRVI-EEYFFRRGASVGYYH-G-DLNALRDDLMELKPTLLAGVPRVFEKIHEGIKKALEELRPLRRRIFDALYK  350 (660)
Q Consensus       274 pl~~~~g~~~-~l~~l~~G~~~v~~~-~-~~~~~~~~i~~~~~t~~~~~p~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~  350 (660)
                      |++|.+++.. .+.++..|+++++.+ . ++..+++.++++++|+++++|+++..+++...                   
T Consensus       233 p~~~~~g~~~~~~~~l~~G~~~v~~~~~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~-------------------  293 (529)
T 2v7b_A          233 KLFFAYGLGNGLTFPLSVGATAILMAERPTADAIFARLVEHRPTVFYGVPTLYANMLVSPN-------------------  293 (529)
T ss_dssp             CTTSHHHHHHHTHHHHHHTCEEECCCSCCCHHHHHHHHHHSCCSEEEECHHHHHHHHTCTT-------------------
T ss_pred             cHHHHHHHHHHHHHHHhcCcEEEEecCCCCHHHHHHHHHHhCCEEEEecHHHHHHHHhCcc-------------------
Confidence            9999999876 567899999999873 3 89999999999999999999999988754210                   


Q ss_pred             HHHHHHhhCCCCCCcchhhhHHHHHHHHHHhCCcEeEEEEccCCCCHHHHHHHHHhcCCceeeecCCCCCCCceecccCC
Q 006111          351 YKLAWMNMGYKQREASPLADLLAFRKVKARLGGRLRLVISGGAPLSTEVEEFLRVTCCAFLVQGYGLTETCGPTTVCFPD  430 (660)
Q Consensus       351 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lr~i~~~G~~l~~~~~~~~~~~~~~~v~~~YG~tE~~~~~~~~~~~  430 (660)
                                     .+..           ...++|.+++||+++++++.+.+.+.+|+++++.||+||++.+++.....
T Consensus       294 ---------------~~~~-----------~~~~lr~~~~gGe~l~~~~~~~~~~~~g~~i~~~YG~TE~~~~~~~~~~~  347 (529)
T 2v7b_A          294 ---------------LPAR-----------ADVAIRICTSAGEALPREIGERFTAHFGCEILDGIGSTEMLHIFLSNRAG  347 (529)
T ss_dssp             ---------------CCCG-----------GGCCCCEEEECSSCCCHHHHHHHHHHHSCCEEEEEECTTTSSEEEECCTT
T ss_pred             ---------------cccc-----------cCCceEEEEEcCCCCCHHHHHHHHHHhCCceeeeEchhhcCceeeccccC
Confidence                           0000           00379999999999999999999998999999999999998766655443


Q ss_pred             CccccCccCCCccCeeEEeeecCCCCCCCCCCCCCceEEEccCCcccccCCCchhhhhcccCCccccCceEEECCCCcEE
Q 006111          431 EMCMVGTAGPVSVYSELRLEEVPEMGYSPLDDPPCGEVCVRGKTLFSGYYKNPDLTRESIIDGWFHTGDIGQILPNGVVK  510 (660)
Q Consensus       431 ~~~~~~~~G~~~~~~~v~ivd~~~~~~~~~~~~~~Gei~v~g~~~~~gy~~~~~~~~~~~~~g~~~TGDl~~~~~~G~l~  510 (660)
                      . ...+++|.|+++++++|+| +++..  ++.|+.|||+|+||+++.||+++++.+.+.|.+|||+|||+|++++||+|+
T Consensus       348 ~-~~~~~~G~p~~~~~~~i~d-~~g~~--~~~g~~GEl~v~g~~~~~gY~~~~~~t~~~f~~~~~~TGDl~~~~~~G~l~  423 (529)
T 2v7b_A          348 A-VEYGTTGRPVPGYEIELRD-EAGHA--VPDGEVGDLYIKGPSAAVMYWNNREKSRATFLGEWIRSGDKYCRLPNGCYV  423 (529)
T ss_dssp             C-CCTTSCCEECTTCEEEEEC-TTSCB--CCTTSCEEEEEECTTCCCCBTTCHHHHHHHEETTEEEEEEEEEECTTSCEE
T ss_pred             C-CccCCcccCCCCCEEEEEC-CCCCC--CCCCCccEEEEecCCcccccCCChHHHHHhhhcCCcccCceEEECCCccEE
Confidence            3 3448999999999999999 77654  445689999999999999999999999999999999999999999999999


Q ss_pred             EEeccCCeeEcCCCeeecchhHHHHHhcCcCcceEEEEecCC--CCeEEEEEEcChhhHHHHHHHCCCCCcHHHHhccHH
Q 006111          511 IIDRKKNLIKISQGEYVALEYLENVYCVAPIIEDIWVYGDSL--KSMLVAVVVPCEEDTKKWAYSNGHAGSFLELCSLVQ  588 (660)
Q Consensus       511 ~~GR~~d~i~~~~G~~v~~~~iE~~l~~~p~V~~~~V~~~~~--~~~~~a~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~  588 (660)
                      +.||.||+||+ +|++|+|.+||++|.+||+|.+|+|++...  .+.++|+|++.++..                 ....
T Consensus       424 ~~GR~dd~ik~-~G~~v~p~eIE~~l~~~p~V~~~~vv~~~~~~~~~~~a~vv~~~~~~-----------------~~~~  485 (529)
T 2v7b_A          424 YAGRSDDMLKV-SGQYVSPVEVEMVLVQHDAVLEAAVVGVDHGGLVKTRAFVVLKREFA-----------------PSEI  485 (529)
T ss_dssp             EEEEGGGCBC-----CBCHHHHHHHHTTSTTEEEEEEEEEEETTEEEEEEEEEECTTCC-----------------CCHH
T ss_pred             EeCccCCeEEE-CCEEECHHHHHHHHHhCCCcceEEEEEecCCCceEEEEEEEecCCCC-----------------cchh
Confidence            99999999997 899999999999999999999999999732  247889999876420                 0111


Q ss_pred             HHHHHHHHHHHHHHhCCCCCceeeeEEEEecCCCCCCCCccccccccchHHHHH
Q 006111          589 LQNYILSELKNAAERNKLRGFEHIKGVILDPRPFDMERDLVTATLKKKRNKLLI  642 (660)
Q Consensus       589 ~~~~~~~~l~~~~~~~~l~~~~~p~~i~~~~~~~~~~~~P~t~~GKv~R~~l~~  642 (660)
                          +.++|+++++ ..||.|++|+.|++++      .+|+|++||++|++|++
T Consensus       486 ----~~~~l~~~l~-~~L~~~~~P~~i~~v~------~lP~t~~GKi~r~~L~~  528 (529)
T 2v7b_A          486 ----LAEELKAFVK-DRLAPHKYPRDIVFVD------DLPKTATGKIQRFKLRE  528 (529)
T ss_dssp             ----HHHHHHHHHH-TTSCTTTSCSEEEEES------CCCBCTTSCBCHHHHHC
T ss_pred             ----HHHHHHHHHH-hhcchhhCCeEEEEec------cCCCCCccchhHHhHhh
Confidence                2235556665 7899999999999974      45899999999999985

>4gr5_A Non-ribosomal peptide synthetase; MBTH-like domain, adenylation domain, ligase, rossmann fold, binding; HET: APC TLA; 1.92A {Streptomyces lydicus} PDB: 4gr4_A

Probab=100.00  E-value=2.1e-72  Score=623.69  Aligned_cols=479  Identities=20%  Similarity=0.185  Sum_probs=317.5

Q ss_pred             CCCCCcHHHHHHHHHHhCCCCCceeeeccccCCCCCceEEeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEeCCchhHHHH
Q 006111           38 DSDLNTAWDIFSMSVQKYPGNRMLGWRPFVDGKFGPYVWKTYKEVYEEVLQIVSALRASGAEPGCRVGIYGANCPQWVEA  117 (660)
Q Consensus        38 ~~~~~ti~~~l~~~a~~~pd~~a~~~~~~~d~~~~~~~~~Ty~ql~~~v~~lA~~L~~~Gl~~gd~V~l~~~n~~e~~~~  117 (660)
                      ++...++.++|+++++++||++|+++.   +      +++||+||.++++++|++|++.|+++||+|+++++|+++++++
T Consensus        71 ~~~~~~l~~~l~~~a~~~pd~~A~~~~---~------~~~Ty~el~~~~~~lA~~L~~~Gv~~gd~V~i~~~n~~~~~~~  141 (570)
T 4gr5_A           71 APAGACVHELFEAQAARAPDAVALLHE---A------DELTYGALNERANRLAHRLVGLGVAPGTLVGVHLERGFDMVVA  141 (570)
T ss_dssp             CCCSCCHHHHHHHHHHHCTTSEEEEET---T------EEEEHHHHHHHHHHHHHHHHHTTCCTTCEEEEECCSSHHHHHH
T ss_pred             CCccCCHHHHHHHHHHHCCCCeEEECC---C------CcEeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEeCCCHHHHHH
Confidence            345679999999999999999999875   3      5899999999999999999999999999999999999999999


Q ss_pred             HHHHHhCCCeEEecCCCCChhHHHHHHhcccceEEEEccchhhhhhccccccccCccEEEEecCCcHHHHHHHhhCCcce
Q 006111          118 MEACNALSLICVPLYDTLGPGAVNFILDHAEIDFVFVQDKKVKELLSPDCRSAQRLRVMVCFTSLTAEQKEMAVQTGIKP  197 (660)
Q Consensus       118 ~lA~~~~G~~~vpl~~~~~~~~l~~~l~~~~~~~ii~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~  197 (660)
                      +|||+++|++++|+++.++.+++.+++++++++++|++......+.        ....++..+...              
T Consensus       142 ~lA~~~~G~~~vpl~~~~~~~~l~~~l~~~~~~~~i~~~~~~~~~~--------~~~~~~~~~~~~--------------  199 (570)
T 4gr5_A          142 LLAVLKAGGGYTMLDPQFPVERLALSLEDTGAPLLVTSRPLSGRLT--------GTTTLYVEDEAA--------------  199 (570)
T ss_dssp             HHHHHHTTCEEEECCTTSCHHHHHHHHHHHTCSEEEECTTTTTSSC--------SSEEEECCC-----------------
T ss_pred             HHHHHHHCCEEEEcCCCChHHHHHHHHHhcCCCEEEecchhhhccc--------CCcceeeecccc--------------
Confidence            9999999999999999999999999999999999999876544321        111221111100              


Q ss_pred             eeHHHHHhcCccCCccCCCCCCCceEEEEecCCCCCCCceeeecchhHHHHhhhhhhhcccccCCCCCCcEEEEecChhH
Q 006111          198 YSWDEFLHLGKVNEMEILPPQPFNICTIMYTSGTSGDPKGVVLTHETIATFVSGVDLFLDQFEDKMTVDDVYLSFLPLAH  277 (660)
Q Consensus       198 ~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~TSGTTG~pK~v~~th~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~pl~~  277 (660)
                              .............++++++|+|||||||.||+|++||+++.+.+.. ...+     ++..++++++++|++|
T Consensus       200 --------~~~~~~~~~~~~~~~d~a~i~~TSGTTG~PKgV~~th~~l~~~~~~-~~~~-----~~~~~d~~l~~~p~~~  265 (570)
T 4gr5_A          200 --------SDAPAGNLATGVGPEDVACVMFTSGSTGRPKGVMSPHRALTGTYLG-QDYA-----GFGPDEVFLQCSPVSW  265 (570)
T ss_dssp             ------------CCCCCCCCCTTSEEEEECCSSCCSSCCCEEEEHHHHHHHHSS-CCSS-----CCSTTCEEEECSCTTS
T ss_pred             --------ccccccccCCCCCCCCeEEEEECCcCCCCCeEEEEecHHHHHHHHh-hhhc-----CCCCCCEEEEecCccH
Confidence                    0001122233457899999999999999999999999999877655 2233     6788999999999998


Q ss_pred             HHHHHHHHHHhhcCcEEEEecC---ChhhHHHHhhhhcCeEEEechHHHHHHHHHHHHHHHhhchHHHHHHHHHHHHHHH
Q 006111          278 ILDRVIEEYFFRRGASVGYYHG---DLNALRDDLMELKPTLLAGVPRVFEKIHEGIKKALEELRPLRRRIFDALYKYKLA  354 (660)
Q Consensus       278 ~~g~~~~l~~l~~G~~~v~~~~---~~~~~~~~i~~~~~t~~~~~p~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~  354 (660)
                      ..+...++.+++.|+++++.+.   ++..+++.|+++++|+++++|+++..|.+....                      
T Consensus       266 ~~~~~~~~~~l~~G~~~v~~~~~~~~~~~~~~~i~~~~vt~~~~~P~~~~~l~~~~~~----------------------  323 (570)
T 4gr5_A          266 DAFGLELFGALLFGARCVLQSGQNPDPLEIGELVARHGVTMLQLSASLFNFLVDEVPE----------------------  323 (570)
T ss_dssp             STHHHHHHHHHTTTCEEEECSSSSCCHHHHHHHHHHHTCCEEEEEHHHHHHHHHHCGG----------------------
T ss_pred             HHHHHHHHHHHhcCCEEEEcCCccCCHHHHHHHHHHcCCcEEEecHHHHHHHHhhchh----------------------
Confidence            7776677888999999999863   889999999999999999999999988653110                      


Q ss_pred             HHhhCCCCCCcchhhhHHHHHHHHHHhCCcEeEEEEccCCCCHHHHHHHHHhc-CCceeeecCCCCCCCceecccCCC--
Q 006111          355 WMNMGYKQREASPLADLLAFRKVKARLGGRLRLVISGGAPLSTEVEEFLRVTC-CAFLVQGYGLTETCGPTTVCFPDE--  431 (660)
Q Consensus       355 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lr~i~~~G~~l~~~~~~~~~~~~-~~~v~~~YG~tE~~~~~~~~~~~~--  431 (660)
                                        .        .++||.+++||+++++.+.+.+.+.+ ++.++++||+||++++++......  
T Consensus       324 ------------------~--------~~~lr~~~~gG~~l~~~~~~~~~~~~~~~~l~~~YG~TE~~~~~~~~~~~~~~  377 (570)
T 4gr5_A          324 ------------------A--------FEGVRYAITGGEPASVPHVAKARRDHPALRLGNGYGPAESMGFTTHHAVVAGD  377 (570)
T ss_dssp             ------------------G--------GTTCSEEEEESSCCCHHHHHHHHHHCTTCEEEEEECCGGGCSCSEEEECCGGG
T ss_pred             ------------------h--------CCCceEEEEecccCCHHHHHHHHHhCCCcEEEEeechhhheeeeeeeeecccc
Confidence                              0        14899999999999999999888877 789999999999998776554322  


Q ss_pred             -ccccCccCCCccCeeEEeeecCCCCCCCCCCCCCceEEEccCCcccccCCCchhhhhcc-cC--------CccccCceE
Q 006111          432 -MCMVGTAGPVSVYSELRLEEVPEMGYSPLDDPPCGEVCVRGKTLFSGYYKNPDLTRESI-ID--------GWFHTGDIG  501 (660)
Q Consensus       432 -~~~~~~~G~~~~~~~v~ivd~~~~~~~~~~~~~~Gei~v~g~~~~~gy~~~~~~~~~~~-~~--------g~~~TGDl~  501 (660)
                       .....++|+|+++++++|+| +++..  ++.|+.|||+|+||+++.||+++++.+.+.| .+        |||+|||+|
T Consensus       378 ~~~~~~~iG~p~~~~~v~i~d-~~~~~--~~~G~~GEl~v~g~~v~~GY~~~~~~t~~~f~~~~~~~~~~~~w~~TGDlg  454 (570)
T 4gr5_A          378 LSGTALPIGVPLAGKRAYVLD-DDLKP--AANGALGELYVAGAGLAHGYVSRPALTAERFVADPFAGPGGERMYRTGDLA  454 (570)
T ss_dssp             TTSSSCCCBEECTTEEEEEEC-TTSCB--CCTTCEEEEEEEETTCCCEETTCHHHHHHHEEECTTCCSSCCEEEEEEEEE
T ss_pred             cCCCccccceeeCCCEEEEEC-CCCCC--CCCCCcEEEEEeecccchhcCCCchhhhcccccCCCCCCCCCEEEeCCCeE
Confidence             22335799999999999999 76654  4556899999999999999999999999998 33        699999999


Q ss_pred             EECCCCcEEEEeccCCeeEcCCCeeecchhHHHHHhcCcCcceEEEEecCCC---CeEEEEEEcChhhHHHHHHHCCCCC
Q 006111          502 QILPNGVVKIIDRKKNLIKISQGEYVALEYLENVYCVAPIIEDIWVYGDSLK---SMLVAVVVPCEEDTKKWAYSNGHAG  578 (660)
Q Consensus       502 ~~~~~G~l~~~GR~~d~i~~~~G~~v~~~~iE~~l~~~p~V~~~~V~~~~~~---~~~~a~v~~~~~~~~~~~~~~~~~~  578 (660)
                      ++|+||+|+++||+||+||+ +|++|+|.+||++|.+||+|.+|+|++.+++   +.++|+|+..++...          
T Consensus       455 ~~d~dG~l~~~GR~~d~Ik~-~G~~v~p~eIE~~l~~~p~V~~a~Vv~~~~~~~~~~~~a~vv~~~~~~~----------  523 (570)
T 4gr5_A          455 RRRADGVLEYVGRADDQVKI-RGFRVEPGEVEARLVGHPAVRQAAVLAQDSRLGDKQLVAYVVAERADAP----------  523 (570)
T ss_dssp             EECTTSCEEEEEC-------------------------------------------------------------------
T ss_pred             EECCCCeEEEEcccCCEEEE-CcEEeCHHHHHHHHhcCCCcceEEEEEeeCCCCCeEEEEEEEecCCCCC----------
Confidence            99999999999999999997 8999999999999999999999999997654   478888887653210          


Q ss_pred             cHHHHhccHHHHHHHHHHHHHHHHhCCCCCceeeeEEEEecCCCCCCCCccccccccchHHHHHH
Q 006111          579 SFLELCSLVQLQNYILSELKNAAERNKLRGFEHIKGVILDPRPFDMERDLVTATLKKKRNKLLIY  643 (660)
Q Consensus       579 ~~~~~~~~~~~~~~~~~~l~~~~~~~~l~~~~~p~~i~~~~~~~~~~~~P~t~~GKv~R~~l~~~  643 (660)
                                   ...++|+++++ .+||.|++|+.++++      +.+|+|++||++|++|++.
T Consensus       524 -------------~~~~~l~~~l~-~~l~~~~~P~~i~~v------~~lP~t~~GKi~R~~L~~~  568 (570)
T 4gr5_A          524 -------------PDAAELRRHVA-EALPAYMVPVECVPV------DELPRTPNGKLDRRALTGS  568 (570)
T ss_dssp             -----------------------------------------------------------------
T ss_pred             -------------cCHHHHHHHHH-hhCccccCCcEEEEc------ccCCCCCCcCcchHhhhcc
Confidence                         01234444554 679999999999886      4469999999999999864

>3rg2_A Enterobactin synthase component E (ENTE), 2,3-DIH dihydroxybenzoate synthetase, isochroismatase...; adenylate-forming enzymes, ANL superfamily; HET: SVS PNS; 3.10A {Escherichia coli}

Probab=100.00  E-value=2.6e-71  Score=620.33  Aligned_cols=502  Identities=18%  Similarity=0.177  Sum_probs=413.4

Q ss_pred             CCCcHHHHHHHHHHhCCCCCceeeeccccCCCCCceEEeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEeCCchhHHHHHH
Q 006111           40 DLNTAWDIFSMSVQKYPGNRMLGWRPFVDGKFGPYVWKTYKEVYEEVLQIVSALRASGAEPGCRVGIYGANCPQWVEAME  119 (660)
Q Consensus        40 ~~~ti~~~l~~~a~~~pd~~a~~~~~~~d~~~~~~~~~Ty~ql~~~v~~lA~~L~~~Gl~~gd~V~l~~~n~~e~~~~~l  119 (660)
                      ...++.++|+++++  ||++|+++.   +      +++||+||.++++++|++|++.|+++||+|+++++|++++++++|
T Consensus        25 ~~~~l~~~~~~~a~--pd~~Av~~~---~------~~lTY~eL~~~a~~lA~~L~~~Gv~~gd~V~l~~~~s~~~vva~l   93 (617)
T 3rg2_A           25 QDLPLTDILTRHAA--SDSIAVIDG---E------RQLSYRELNQAADNLACSLRRQGIKPGETALVQLGNVAELYITFF   93 (617)
T ss_dssp             CCCCTTHHHHTTTT--CCSEEEEET---T------EEEEHHHHHHHHHHHHHHHHHTTCCTTCEEEEECCSSHHHHHHHH
T ss_pred             CcCCHHHHHHHhhC--CCCeEEecC---C------ceEeHHHHHHHHHHHHHHHHHcCCCCCCEEEEECCCcHHHHHHHH
Confidence            35789999999888  999999875   3      689999999999999999999999999999999999999999999


Q ss_pred             HHHhCCCeEEecCCCCChhHHHHHHhcccceEEEEccchhhh----hhccccccccCccEEEEecCCcHHHHHHHhhCCc
Q 006111          120 ACNALSLICVPLYDTLGPGAVNFILDHAEIDFVFVQDKKVKE----LLSPDCRSAQRLRVMVCFTSLTAEQKEMAVQTGI  195 (660)
Q Consensus       120 A~~~~G~~~vpl~~~~~~~~l~~~l~~~~~~~ii~~~~~~~~----~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~  195 (660)
                      ||+++|++++|+++.++.+++..+++.+++++++++......    ..............+...+....           
T Consensus        94 A~l~aG~~~vpl~~~~~~~~l~~~l~~~~~~~vl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----------  162 (617)
T 3rg2_A           94 ALLKLGVAPVLALFSHQRSELNAYASQIEPALLIADRQHALFSGDDFLNTFVTEHSSIRVVQLLNDSGE-----------  162 (617)
T ss_dssp             HHHHHTCEEEEECTTCCHHHHHHHHHHHCCSEEEEETTSGGGSSSHHHHHHHHHSTTCCEEEEETCCST-----------
T ss_pred             HHHhcCeEEccCCccccHHHHHHHHhhcCceEEEecccccccccHHHHHHHhhcCCccceeeecccccc-----------
Confidence            999999999999999999999999999999999998765411    11111112233444444443221           


Q ss_pred             ceeeHHHHHhcCccCCccCCCCCCCceEEEEecCCCCCCCceeeecchhHHHHhhhhhhhcccccCCCCCCcEEEEecCh
Q 006111          196 KPYSWDEFLHLGKVNEMEILPPQPFNICTIMYTSGTSGDPKGVVLTHETIATFVSGVDLFLDQFEDKMTVDDVYLSFLPL  275 (660)
Q Consensus       196 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~TSGTTG~pK~v~~th~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~pl  275 (660)
                        ..+.+..... .......+..++++++|+|||||||.||+|+++|+++.+.+......+     ++..++++++++|+
T Consensus       163 --~~~~~~~~~~-~~~~~~~~~~~~~~a~ii~TSGSTG~PKgV~~th~~~~~~~~~~~~~~-----~~~~~~~~l~~~p~  234 (617)
T 3rg2_A          163 --HNLQDAINHP-AEDFTATPSPADEVAYFQLSGGTTGTPKLIPRTHNDYYYSVRRSVEIC-----QFTQQTRYLCAIPA  234 (617)
T ss_dssp             --TBHHHHHHSC-CSSCCCCCCCTTSEEEEEECCCSSSSCCEEEEEHHHHHHHHHHHHHHH-----TCCTTCEEEECSCT
T ss_pred             --cchhhhhccc-ccccCCCCCCCCCeEEEEECCCcCCCCCEeehhHHHHHHHHHHHHHhc-----CCCCcceEEEeccc
Confidence              1233333322 122233455789999999999999999999999999999998887777     88999999999999


Q ss_pred             hHHHHHHH--HHHHhhcCcEEEEecC-ChhhHHHHhhhhcCeEEEechHHHHHHHHHHHHHHHhhchHHHHHHHHHHHHH
Q 006111          276 AHILDRVI--EEYFFRRGASVGYYHG-DLNALRDDLMELKPTLLAGVPRVFEKIHEGIKKALEELRPLRRRIFDALYKYK  352 (660)
Q Consensus       276 ~~~~g~~~--~l~~l~~G~~~v~~~~-~~~~~~~~i~~~~~t~~~~~p~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~  352 (660)
                      +|.+++..  .+.++..|+++++.+. ++..++..++++++|+++++|+++..+.+........                
T Consensus       235 ~~~~~~~~~~~~~~l~~G~~~v~~~~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~----------------  298 (617)
T 3rg2_A          235 AHNYAMSSPGSLGVFLAGGTVVLAADPSATLCFPLIEKHQVNVTALVPPAVSLWLQALIEGESR----------------  298 (617)
T ss_dssp             TSHHHHHSSHHHHHHHHTCEEEECSSCCHHHHHHHHHHTTCCEEEECHHHHHHHHHHHHTTCCT----------------
T ss_pred             hhhhhhhHHHHHHHHHcCCEEEEeCCCCHHHHHHHHHHhCCcEEEcchHHHHHHHHhhhccccc----------------
Confidence            99999875  6788999999999876 8999999999999999999999999887643321000                


Q ss_pred             HHHHhhCCCCCCcchhhhHHHHHHHHHHhCCcEeEEEEccCCCCHHHHHHHHHhcCCceeeecCCCCCCCceecccCCCc
Q 006111          353 LAWMNMGYKQREASPLADLLAFRKVKARLGGRLRLVISGGAPLSTEVEEFLRVTCCAFLVQGYGLTETCGPTTVCFPDEM  432 (660)
Q Consensus       353 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lr~i~~~G~~l~~~~~~~~~~~~~~~v~~~YG~tE~~~~~~~~~~~~~  432 (660)
                                                 ...+++|.+++||+++++++.+.+.+.+|+.+++.||+||++..++.......
T Consensus       299 ---------------------------~~l~~lr~i~~gGe~l~~~~~~~~~~~~~~~~~~~YG~tE~~~~~~~~~~~~~  351 (617)
T 3rg2_A          299 ---------------------------AQLASLKLLQVGGARLSATLAARIPAEIGCQLQQVFGMAEGLVNYTRLDDSAE  351 (617)
T ss_dssp             ---------------------------TTTTTCCEEEEESSCCCHHHHHHHHHHTCSEEEEEEEETTEEEEECCTTSCHH
T ss_pred             ---------------------------ccCCCccEEEEcCCcCCHHHHHHHHHHhCCcEEEEeccCcceeecccCCCccc
Confidence                                       01148999999999999999999999999999999999999866554433333


Q ss_pred             cccCccCCCc-cCeeEEeeecCCCCCCCCCCCCCceEEEccCCcccccCCCchhhhhcc-cCCccccCceEEECCCCcEE
Q 006111          433 CMVGTAGPVS-VYSELRLEEVPEMGYSPLDDPPCGEVCVRGKTLFSGYYKNPDLTRESI-IDGWFHTGDIGQILPNGVVK  510 (660)
Q Consensus       433 ~~~~~~G~~~-~~~~v~ivd~~~~~~~~~~~~~~Gei~v~g~~~~~gy~~~~~~~~~~~-~~g~~~TGDl~~~~~~G~l~  510 (660)
                      ....++|.|+ ++++++|+| +++.  +++.|+.|||+|+||+++.||+++++.+.+.| .++||+|||+|++++||.|+
T Consensus       352 ~~~~~~G~p~~~~~~~~i~d-~~~~--~~p~G~~GEl~i~G~~v~~GY~~~p~~t~~~f~~~~~yrTGDl~~~~~dG~l~  428 (617)
T 3rg2_A          352 KIIHTQGYPMCPDDEVWVAD-AEGN--PLPQGEVGRLMTRGPYTFRGYYKSPQHNASAFDANGFYCSGDLISIDPEGYIT  428 (617)
T ss_dssp             HHHHCCCEESCTTCEEEEEC-TTSC--BCCTTCCEEEEEECSSSCSCCTTCHHHHHHHBCTTSCEEEEEEEEECTTSCEE
T ss_pred             ccccCCCccCCCCceEEEEC-CCCC--CCCCCCceEEEecCccccchhcCChhhhhhccCCCCceecCceEEEcCCceEE
Confidence            3346889887 788999999 7665  44556899999999999999999999999999 79999999999999999999


Q ss_pred             EEeccCCeeEcCCCeeecchhHHHHHhcCcCcceEEEEecCCC---CeEEEEEEcChhhHHHHHHHCCCCCcHHHHhccH
Q 006111          511 IIDRKKNLIKISQGEYVALEYLENVYCVAPIIEDIWVYGDSLK---SMLVAVVVPCEEDTKKWAYSNGHAGSFLELCSLV  587 (660)
Q Consensus       511 ~~GR~~d~i~~~~G~~v~~~~iE~~l~~~p~V~~~~V~~~~~~---~~~~a~v~~~~~~~~~~~~~~~~~~~~~~~~~~~  587 (660)
                      ++||.||+||+ +|++|+|.+||++|.+||+|.+|+|++.+++   +.++|+++..+..                  .. 
T Consensus       429 ~~GR~dd~iki-~G~ri~~~eIE~~l~~~p~V~~a~vv~~~~~~~~~~~~a~vv~~~~~------------------~~-  488 (617)
T 3rg2_A          429 VQGREKDQINR-GGEKIAAEEIENLLLRHPAVIYAALVSMEDELMGEKSCAYLVVKEPL------------------RA-  488 (617)
T ss_dssp             EEEECSSEEEE-TTEEEEHHHHHHHHTTSTTEEEEEEEEEEETTTEEEEEEEEEESSCC------------------CH-
T ss_pred             EEeecCCEEEE-CCEEeCHHHHHHHHHhCCCeeEEEEEeccCcccCeeEEEEEEeCCCC------------------CH-
Confidence            99999999997 7999999999999999999999999986543   4788998887632                  11 


Q ss_pred             HHHHHHHHHHHHHHHhCCCCCceeeeEEEEecCCCCCCCCccccccccchHHHHHHHHHHHHH
Q 006111          588 QLQNYILSELKNAAERNKLRGFEHIKGVILDPRPFDMERDLVTATLKKKRNKLLIYYQVEIDQ  650 (660)
Q Consensus       588 ~~~~~~~~~l~~~~~~~~l~~~~~p~~i~~~~~~~~~~~~P~t~~GKv~R~~l~~~~~~~i~~  650 (660)
                             .++++++++..||.|++|..++++      +.+|+|++||++|++|++.+......
T Consensus       489 -------~~l~~~l~~~~lp~~~vP~~~~~v------~~lP~t~~GKidR~~L~~~~~~~~~~  538 (617)
T 3rg2_A          489 -------VQVRRFLREQGIAEFKLPDRVECV------DSLPLTAVGKVDKKQLRQWLASRASA  538 (617)
T ss_dssp             -------HHHHHHHHTTTCCGGGSCSEEEEC------SCCCBCTTSSBCHHHHHHHHHHHHHH
T ss_pred             -------HHHHHHHHhCCCccccCCcEEEEe------cccCCCCCCCCcHHHHHHHHhccccc
Confidence                   234444443479999999999987      45699999999999999998776544

>4dg8_A PA1221; ANL superfamily, adenylation domain, peptidyl carrier protei ribosomal peptide synthetase, NRPS, valine adenylation, LIG; HET: AMP; 2.15A {Pseudomonas aeruginosa} PDB: 4dg9_A*

Probab=100.00  E-value=9.8e-72  Score=621.19  Aligned_cols=476  Identities=18%  Similarity=0.141  Sum_probs=386.7

Q ss_pred             CCCcHHHHHHHHHHhCCCCCceeeeccccCCCCCceEEeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEeCCchhHHHHHH
Q 006111           40 DLNTAWDIFSMSVQKYPGNRMLGWRPFVDGKFGPYVWKTYKEVYEEVLQIVSALRASGAEPGCRVGIYGANCPQWVEAME  119 (660)
Q Consensus        40 ~~~ti~~~l~~~a~~~pd~~a~~~~~~~d~~~~~~~~~Ty~ql~~~v~~lA~~L~~~Gl~~gd~V~l~~~n~~e~~~~~l  119 (660)
                      ...|+.+.|+++++++||++|+++.   +      +++||+||.++++++|++|++.|+++||+|+++++|++++++++|
T Consensus        25 ~~~tl~~~~~~~a~~~Pd~~Av~~~---~------~~lTY~eL~~~a~~lA~~L~~~Gv~~g~~V~i~~~~s~~~vva~l   95 (620)
T 4dg8_A           25 AHPTVVARFSEMAALHPHREAIRDR---F------GSVDYRQLLDSAEQLSDYLLEHYPQPGVCLGVYGEYSRESITCLL   95 (620)
T ss_dssp             GSCCHHHHHHHHHHHCTTSEEEEET---T------EEEEHHHHHHHHHHHHHHHHHHCCSSCCEEEEESSSCHHHHHHHH
T ss_pred             CCCCHHHHHHHHHHhCCCCeEEEcC---C------CcCcHHHHHHHHHHHHHHHHHcCCCCCCEEEEEeCCCHHHHHHHH
Confidence            3579999999999999999999976   3      589999999999999999999999999999999999999999999


Q ss_pred             HHHhCCCeEEecCCCCChhHHHHHHhcccceEEEEccchhhhhhccccccccCccEEEEecCCcHHHHHHHhhCCcceee
Q 006111          120 ACNALSLICVPLYDTLGPGAVNFILDHAEIDFVFVQDKKVKELLSPDCRSAQRLRVMVCFTSLTAEQKEMAVQTGIKPYS  199 (660)
Q Consensus       120 A~~~~G~~~vpl~~~~~~~~l~~~l~~~~~~~ii~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~  199 (660)
                      ||+++|++++|++|.++.+++.++++++++++++++........        ....+ .                     
T Consensus        96 ailkaGa~~vpld~~~p~~~l~~il~~~~~~~vl~~~~~~~~~~--------~~~~~-~---------------------  145 (620)
T 4dg8_A           96 AILLSGHHYLYIDLKQPAAWNAELCRQVDCRLILDCSTTPTPAN--------GLPCV-P---------------------  145 (620)
T ss_dssp             HHHHTTCEEEECCTTSCHHHHHHHHHHHTEEEEEECCSSCCCCT--------TSCEE-E---------------------
T ss_pred             HHHHhCCEEEeeCccChHHHHHHHHHhCCCcEEEecCccccccc--------CCcee-e---------------------
Confidence            99999999999999999999999999999999997655332111        00000 0                     


Q ss_pred             HHHHHhcCccCCccCCCCCCCceEEEEecCCCCCCCceeeecchhHHHHhhhhhhhcccccCCCCCCcEEEEecChhHHH
Q 006111          200 WDEFLHLGKVNEMEILPPQPFNICTIMYTSGTSGDPKGVVLTHETIATFVSGVDLFLDQFEDKMTVDDVYLSFLPLAHIL  279 (660)
Q Consensus       200 ~~~~~~~~~~~~~~~~~~~~~~~~~i~~TSGTTG~pK~v~~th~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~pl~~~~  279 (660)
                      +....  ............++++++|+|||||||.||||+++|+++.+.+.. ...+     ++..++++++.+|++|..
T Consensus       146 ~~~~~--~~~~~~~~~~~~~~d~a~iiyTSGSTG~PKgV~~th~~l~~~~~~-~~~~-----~~~~~d~~l~~~p~~~~~  217 (620)
T 4dg8_A          146 VRHLP--AAPASVARPCFAADQIAYINFSSGTTGRPKAIACTHAGITRLCLG-QSFL-----AFAPQMRFLVNSPLSFDA  217 (620)
T ss_dssp             GGGCC--CCCCCSSCCCCCTTSEEEEEEEBSSSSSCEEEEEEHHHHHHHHSS-CGGG-----TTCTTCEEEECSCTTSTH
T ss_pred             eccCC--cCCccccCCCCCCCCeEEEEECCCccccCeEEEEchHHHHHHHHH-HHhh-----CCCCCCEEEEECccCHHH
Confidence            00000  001112223346899999999999999999999999999887765 3334     788999999999999999


Q ss_pred             HHHHHHHHhhcCcEEEEecC---ChhhHHHHhhhhcCeEEEechHHHHHHHHHHHHHHHhhchHHHHHHHHHHHHHHHHH
Q 006111          280 DRVIEEYFFRRGASVGYYHG---DLNALRDDLMELKPTLLAGVPRVFEKIHEGIKKALEELRPLRRRIFDALYKYKLAWM  356 (660)
Q Consensus       280 g~~~~l~~l~~G~~~v~~~~---~~~~~~~~i~~~~~t~~~~~p~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  356 (660)
                      ++..++.++..|+++++.+.   ++..+++.|+++++|+++++|+++..+.+...                         
T Consensus       218 ~~~~~~~~l~~G~~~v~~~~~~~~~~~~~~~i~~~~vt~~~~~Ps~~~~l~~~~~-------------------------  272 (620)
T 4dg8_A          218 ATLEIWGALLNGGCCVLNDLGPLDPGVLRQLIGERGADSAWLTASLFNTLVDLDP-------------------------  272 (620)
T ss_dssp             HHHHHHHHHTTTCEEEECCSSSCCHHHHHHHHHTTCCCEEEEEHHHHHHHHHHCG-------------------------
T ss_pred             HHHHHHHHHhcCCEEEeCccccCCHHHHHHHHHHhCCcEEEccHHHHHHHHhcCh-------------------------
Confidence            98888999999999998752   89999999999999999999999998864210                         


Q ss_pred             hhCCCCCCcchhhhHHHHHHHHHHhCCcEeEEEEccCCCCHHHHHHHHHhc-CCceeeecCCCCCCCceecccCCC---c
Q 006111          357 NMGYKQREASPLADLLAFRKVKARLGGRLRLVISGGAPLSTEVEEFLRVTC-CAFLVQGYGLTETCGPTTVCFPDE---M  432 (660)
Q Consensus       357 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~lr~i~~~G~~l~~~~~~~~~~~~-~~~v~~~YG~tE~~~~~~~~~~~~---~  432 (660)
                                     .        ..++||.+++||++++++..+.+.+.+ ++.+++.||+||++.+++......   .
T Consensus       273 ---------------~--------~l~~lr~v~~gGe~l~~~~~~~~~~~~~~~~l~n~YG~TE~~~~~~~~~~~~~~~~  329 (620)
T 4dg8_A          273 ---------------D--------CLGGLRQLLTGGDILSVPHVRRALLRHPRLHLVNGYGPTENTTFTCCHVVTDDDLE  329 (620)
T ss_dssp             ---------------G--------GGTTCSEEEEESSCCCHHHHHHHHHHCTTCEEEEEECCGGGCSCSEEEECCTGGGG
T ss_pred             ---------------h--------hCCCccEEEEEeCcCCHHHHHHHHHhCCCeEEEeeEchhhhhhheEEEeccccccC
Confidence                           0        014899999999999998888776665 889999999999998776543322   2


Q ss_pred             cccCccCCCccCeeEEeeecCCCCCCCCCCCCCceEEEccCCcccccCCCchhhhhcccC--------CccccCceEEEC
Q 006111          433 CMVGTAGPVSVYSELRLEEVPEMGYSPLDDPPCGEVCVRGKTLFSGYYKNPDLTRESIID--------GWFHTGDIGQIL  504 (660)
Q Consensus       433 ~~~~~~G~~~~~~~v~ivd~~~~~~~~~~~~~~Gei~v~g~~~~~gy~~~~~~~~~~~~~--------g~~~TGDl~~~~  504 (660)
                      ....++|+|+++++++|+| +++.. .++.|+.|||+|+|++++.||+++++.+.+.|.+        +||+|||+|+++
T Consensus       330 ~~~~~iG~p~~~~~~~i~d-~~~~~-~~~~g~~GEl~i~G~~v~~GY~~~p~~t~~~f~~~p~~~~~~~~yrTGDl~~~~  407 (620)
T 4dg8_A          330 EDDIPIGKAIAGTAVLLLD-EHGQE-IAEPDRAGEIVAFGAGLAQGYRNDAARTRASFVELPYRGRLLRAYRTGDRARYD  407 (620)
T ss_dssp             SSSCCCBEECTTEEEEEEC-TTSCB-CCSSSCCEEEEEEETTCCSEETTCHHHHHHHEEEEEETTEEEEEEEEEEEEEEC
T ss_pred             CCCCCceecccCcEEEEEC-ccCCC-CCCCCCceEEEEeccccccccCCChhhhhhhhccCCCCCCCceEEeCCCEEEEC
Confidence            3346899999999999999 66553 3456789999999999999999999999999943        799999999999


Q ss_pred             CCCcEEEEeccCCeeEcCCCeeecchhHHHHHhcCcCcceEEEEecCCCC--eEEEEEEcChhhHHHHHHHCCCCCcHHH
Q 006111          505 PNGVVKIIDRKKNLIKISQGEYVALEYLENVYCVAPIIEDIWVYGDSLKS--MLVAVVVPCEEDTKKWAYSNGHAGSFLE  582 (660)
Q Consensus       505 ~~G~l~~~GR~~d~i~~~~G~~v~~~~iE~~l~~~p~V~~~~V~~~~~~~--~~~a~v~~~~~~~~~~~~~~~~~~~~~~  582 (660)
                      +||.|+++||.||+||+ +|++|+|.|||++|.+||+|.+|+|++.++..  .++++++...+.             +  
T Consensus       408 ~dG~l~~~GR~dd~Ik~-~G~ri~~~eIE~~l~~~p~V~~a~Vv~~~~~~~~~lv~~~~~~~~~-------------~--  471 (620)
T 4dg8_A          408 EQGRLRFIGRGDGQVKL-NGYRLDLPALEQRFRRQPGILDCALLVRERNGVKQLLCAWTGKADA-------------S--  471 (620)
T ss_dssp             TTSCEEEEECSSSEEEE-TTEEEEHHHHHHHHHTSTTEEEEEEEEEEETTEEEEEEEEEECTTC-------------C--
T ss_pred             CCCeEEEEccCCCEEEE-CCEEcCHHHHHHHHHhCCCccEEEEEEEeCCCceEEEEEEecChHH-------------H--
Confidence            99999999999999998 79999999999999999999999999866543  555555543321             0  


Q ss_pred             HhccHHHHHHHHHHHHHHHHhCCCCCceeeeEEEEecCCCCCCCCccccccccchHHHHHHHHHHHHH
Q 006111          583 LCSLVQLQNYILSELKNAAERNKLRGFEHIKGVILDPRPFDMERDLVTATLKKKRNKLLIYYQVEIDQ  650 (660)
Q Consensus       583 ~~~~~~~~~~~~~~l~~~~~~~~l~~~~~p~~i~~~~~~~~~~~~P~t~~GKv~R~~l~~~~~~~i~~  650 (660)
                                 .+.+     ...||.|++|+.++++      +.+|+|++||++|++|+++|.+.++.
T Consensus       472 -----------~~~l-----~~~Lp~y~~P~~~~~v------~~lP~t~~GKidR~~L~~~~~~~~~~  517 (620)
T 4dg8_A          472 -----------PQAL-----LRQLPTWQRPHACVRV------EALPLTAHGKLDRAALLRRLEEPLER  517 (620)
T ss_dssp             -----------CHHH-----HHHSCGGGSCSEEEEC------SSCCCC----CCHHHHHHHTCSCC--
T ss_pred             -----------HHHH-----HHhChhhcCCcEEEEE------CcCCCCcccCHhHHHHhhcccccccc
Confidence                       0111     2468999999999987      45699999999999999887654433

>3l8c_A D-alanine--poly(phosphoribitol) ligase subunit 1; structural genomics, DLTA, ATP-binding, cytoplasm, nucleotide-binding; 2.41A {Streptococcus pyogenes serotype M6} PDB: 3lgx_A*

Probab=100.00  E-value=1.3e-71  Score=611.79  Aligned_cols=493  Identities=16%  Similarity=0.136  Sum_probs=395.4

Q ss_pred             CCCcHHHHHHHHHHhCCCCCceeeeccccCCCCCceEEeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEeCCchhHHHHHH
Q 006111           40 DLNTAWDIFSMSVQKYPGNRMLGWRPFVDGKFGPYVWKTYKEVYEEVLQIVSALRASGAEPGCRVGIYGANCPQWVEAME  119 (660)
Q Consensus        40 ~~~ti~~~l~~~a~~~pd~~a~~~~~~~d~~~~~~~~~Ty~ql~~~v~~lA~~L~~~Gl~~gd~V~l~~~n~~e~~~~~l  119 (660)
                      ++.++.+.|+++++++|+++|+.+.    +     +++||+||.++++++|.+|.+.|+++||+|+++++|++++++++|
T Consensus         2 ~~~~l~~~l~~~a~~~p~~~a~~~~----~-----~~~Ty~el~~~~~~lA~~L~~~g~~~gd~V~i~~~n~~~~~~~~l   72 (521)
T 3l8c_A            2 SLKDMIDSIEQFAQTQADFPVYDCL----G-----ERRTYGQLKRDSDSIAAFIDSLALLAKSPVLVFGAQTYDMLATFV   72 (521)
T ss_dssp             CCCCHHHHHHHHHHHSTTSEEEEET----T-----EEEEHHHHHHHHHHHHHHHHHTCCCTTCCEEEEECSSHHHHHHHH
T ss_pred             cHHHHHHHHHHHHHHCCCCcceecC----C-----CeecHHHHHHHHHHHHHHHHHcCCCCCCEEEEEeCCCHHHHHHHH
Confidence            3678999999999999999999875    3     689999999999999999999999999999999999999999999


Q ss_pred             HHHhCCCeEEecCCCCChhHHHHHHhcccceEEEEccchhhhhhccccccccCccEEEEecCCcHHHHHHHhhCCcceee
Q 006111          120 ACNALSLICVPLYDTLGPGAVNFILDHAEIDFVFVQDKKVKELLSPDCRSAQRLRVMVCFTSLTAEQKEMAVQTGIKPYS  199 (660)
Q Consensus       120 A~~~~G~~~vpl~~~~~~~~l~~~l~~~~~~~ii~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~  199 (660)
                      ||+++|++++|+++.++.+++.++++.++++++|++.+....+.        .. .                     ...
T Consensus        73 A~~~~G~v~vpl~~~~~~~~l~~il~~~~~~~ii~~~~~~~~~~--------~~-~---------------------~~~  122 (521)
T 3l8c_A           73 ALTKSGHAYIPVDVHSAPERILAIIEIAKPSLIIAIEEFPLTIE--------GI-S---------------------LVS  122 (521)
T ss_dssp             HHHHTTCCEEEEETTSCHHHHHHHHHHSCCSEEEESSCCCSCCT--------TS-E---------------------EEE
T ss_pred             HHHHhCCEEEecCccccHHHHHHHHHhCCCCEEEecCccccccc--------cC-c---------------------ccc
Confidence            99999999999999999999999999999999999876433211        00 1                     112


Q ss_pred             HHHHHhcC--ccCCccCCCCCCCceEEEEecCCCCCCCceeeecchhHHHHhhhhhhhcccccCCCCCCcEEEEecChhH
Q 006111          200 WDEFLHLG--KVNEMEILPPQPFNICTIMYTSGTSGDPKGVVLTHETIATFVSGVDLFLDQFEDKMTVDDVYLSFLPLAH  277 (660)
Q Consensus       200 ~~~~~~~~--~~~~~~~~~~~~~~~~~i~~TSGTTG~pK~v~~th~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~pl~~  277 (660)
                      +.++....  ...........++++++|+|||||||.||+|++||+++.+.+.......   ..++..++++++..|++|
T Consensus       123 ~~~~~~~~~~~~~~~~~~~~~~~d~a~i~~TSGTTG~PKgV~~sh~~l~~~~~~~~~~~---~~~~~~~~~~l~~~~~~~  199 (521)
T 3l8c_A          123 LSEIESAKLAEMPYERTHSVKGDDNYYIIFTSGTTGQPKGVQISHDNLLSFTNWMIEDA---AFDVPKQPQMLAQPPYSF  199 (521)
T ss_dssp             HHHHHHHHHHTCCCCCSSCCCTTSEEEEEECCC---CCCEEEEEHHHHHHHHHHHHHCT---TTCCCSSCEEECCSCTTS
T ss_pred             hhhhhhcccccCCcccCCCCCCCCcEEEEEcCCCCCCCCEEEEehHHHHHHHHHHhhcc---ccCCCCCCeEEecCCccH
Confidence            22221111  0112223456789999999999999999999999999998877654431   126788999999999999


Q ss_pred             HHHHHHHHHHhhcCcEEEEecC----ChhhHHHHhhhhcCeEEEechHHHHHHHHHHHHHHHhhchHHHHHHHHHHHHHH
Q 006111          278 ILDRVIEEYFFRRGASVGYYHG----DLNALRDDLMELKPTLLAGVPRVFEKIHEGIKKALEELRPLRRRIFDALYKYKL  353 (660)
Q Consensus       278 ~~g~~~~l~~l~~G~~~v~~~~----~~~~~~~~i~~~~~t~~~~~p~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~  353 (660)
                      ..++...+.++..|+++++.+.    ++..+++.+.++++|+++++|+++..+.....                      
T Consensus       200 ~~~~~~~~~~l~~G~~~~~~~~~~~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~----------------------  257 (521)
T 3l8c_A          200 DLSVMYWAPTLALGGTLFALPKELVADFKQLFTTIAQLPVGIWTSTPSFADMAMLSDD----------------------  257 (521)
T ss_dssp             GGGHHHHHHHHHTTCEEEECCGGGTTCHHHHHHHHHHSCCSEEEECHHHHHHHHTSTT----------------------
T ss_pred             HHHHHHHHHHHhcCCEEEEcCHHHhhCHHHHHHHHHHcCCcEEEeCCCHHHHHhhhhc----------------------
Confidence            8888778888999999998864    78999999999999999999999987653110                      


Q ss_pred             HHHhhCCCCCCcchhhhHHHHHHHHHHhCCcEeEEEEccCCCCHHHHHHHHHhc-CCceeeecCCCCCCCceecccCCC-
Q 006111          354 AWMNMGYKQREASPLADLLAFRKVKARLGGRLRLVISGGAPLSTEVEEFLRVTC-CAFLVQGYGLTETCGPTTVCFPDE-  431 (660)
Q Consensus       354 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lr~i~~~G~~l~~~~~~~~~~~~-~~~v~~~YG~tE~~~~~~~~~~~~-  431 (660)
                                     ....        ..+++|.+++||+++++++.+.+.+.+ ++++++.||+||+++.++...... 
T Consensus       258 ---------------~~~~--------~~~~lr~~~~gG~~l~~~~~~~~~~~~~~~~i~~~YG~TE~~~~~~~~~~~~~  314 (521)
T 3l8c_A          258 ---------------FCQA--------KMPALTHFYFDGEELTVSTARKLFERFPSAKIINAYGPTEATVALSAIEITRE  314 (521)
T ss_dssp             ---------------CSTT--------TCTTCCEEEECSSCCCHHHHHHHHHHCTTCEEEEEECCGGGSSCSEEEEECHH
T ss_pred             ---------------cccc--------cCccceEEEEecccCCHHHHHHHHHHCCCceEEeCcCccHHhhhhceeecccc
Confidence                           0001        114899999999999999999999888 899999999999998776544322 


Q ss_pred             ---ccccCccCCCccCeeEEeeecCCCCCCCCCCCCCceEEEccCCcccccCCCchhhhhcc----cCCccccCceEEEC
Q 006111          432 ---MCMVGTAGPVSVYSELRLEEVPEMGYSPLDDPPCGEVCVRGKTLFSGYYKNPDLTRESI----IDGWFHTGDIGQIL  504 (660)
Q Consensus       432 ---~~~~~~~G~~~~~~~v~ivd~~~~~~~~~~~~~~Gei~v~g~~~~~gy~~~~~~~~~~~----~~g~~~TGDl~~~~  504 (660)
                         .....++|+|+++++++|+| +++..  ++.|+.|||+|+||+++.||+++++.+.+.|    .+|||+|||+|++|
T Consensus       315 ~~~~~~~~~vG~p~~~~~~~i~d-~~g~~--~~~g~~GEl~v~g~~v~~GY~~~~~~t~~~f~~~~~~~~~~TGDlg~~d  391 (521)
T 3l8c_A          315 MVDNYTRLPIGYPKPDSPTYIID-EDGKE--LSSGEQGEIIVTGPAVSKGYLNNPEKTAEAFFTFKGQPAYHTGDIGSLT  391 (521)
T ss_dssp             HHHHCSSCEEEEECTTSCEEEEC-TTSCB--CCTTCCEEEEEESTTSCSCBTTCHHHHHHHEEEETTEEEEEEEEEEEEC
T ss_pred             cccCCCccccccccCCCEEEEEC-CCcCC--CCCCCceEEEecccccChhhcCCchHhhccCcCCCCceeeeCCCEEEEe
Confidence               12336899999999999999 76654  4556899999999999999999999999988    35799999999999


Q ss_pred             CCCcEEEEeccCCeeEcCCCeeecchhHHHHHhcCcCcceEEEEecCCC----CeEEEEEEcChhhHHHHHHHCCCCCcH
Q 006111          505 PNGVVKIIDRKKNLIKISQGEYVALEYLENVYCVAPIIEDIWVYGDSLK----SMLVAVVVPCEEDTKKWAYSNGHAGSF  580 (660)
Q Consensus       505 ~~G~l~~~GR~~d~i~~~~G~~v~~~~iE~~l~~~p~V~~~~V~~~~~~----~~~~a~v~~~~~~~~~~~~~~~~~~~~  580 (660)
                      ++|++++.||.||+|++ +|++|+|.+||++|.+||+|.+|+|++..+.    +.++|+|++.++....           
T Consensus       392 ~dG~l~~~GR~~d~i~~-~G~~v~p~eIE~~l~~~p~V~~a~vv~~~~~~~~~~~~~a~vv~~~~~~~~-----------  459 (521)
T 3l8c_A          392 EDNILLYGGRLDFQIKY-AGYRIELEDVSQQLNQSPMVASAVAVPRYNKEHKVQNLLAYIVVKDGVKER-----------  459 (521)
T ss_dssp             SSSCEEEEEEGGGBCC------CBHHHHHHHHHTSTTEEEEEEECCCSSSCC---CEEEEEECTTSGGG-----------
T ss_pred             CCCeEEEeCcccceEeE-CCEEeCHHHHHHHHHcCCCcceEEEEEeecCCCCceEEEEEEEecCccccc-----------
Confidence            99999999999999997 7999999999999999999999999986532    4789999998753100           


Q ss_pred             HHHhccHHHHHHHHHHHHHHHHhCCCCCceeeeEEEEecCCCCCCCCccccccccchHHHHHHHHHH
Q 006111          581 LELCSLVQLQNYILSELKNAAERNKLRGFEHIKGVILDPRPFDMERDLVTATLKKKRNKLLIYYQVE  647 (660)
Q Consensus       581 ~~~~~~~~~~~~~~~~l~~~~~~~~l~~~~~p~~i~~~~~~~~~~~~P~t~~GKv~R~~l~~~~~~~  647 (660)
                          .+  -...+.++|+++++ .+||.|++|+.|+++      +.+|+|++||++|++|+++++++
T Consensus       460 ----~~--~~~~~~~~l~~~l~-~~l~~~~~P~~i~~v------~~lP~t~~GKidr~~L~~~~~~~  513 (521)
T 3l8c_A          460 ----FD--RELELTKAIKASVK-DHMMSYMMPSKFLYR------DSLPLTPNGKIDIKTLINEVNNR  513 (521)
T ss_dssp             ----CS--SHHHHHHHHHHHSG-GGSCGGGSCSEEEEC------SSCCBCTTSSBCHHHHHHHTC--
T ss_pred             ----cc--cchhhHHHHHHHHH-hhCccccCCeEEEEe------cccCCCCCcCccHHHHhhhhhcC
Confidence                00  01123456666665 789999999999986      44699999999999999998664

>1amu_A GRSA, gramicidin synthetase 1; peptide synthetase, adenylate forming; HET: PHE AMP; 1.90A {Brevibacillus brevis} SCOP: e.23.1.1

Probab=100.00  E-value=3.3e-71  Score=611.90  Aligned_cols=475  Identities=20%  Similarity=0.225  Sum_probs=391.6

Q ss_pred             CCCcHHHHHHHHHHhCCCCCceeeeccccCCCCCceEEeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEeCCchhHHHHHH
Q 006111           40 DLNTAWDIFSMSVQKYPGNRMLGWRPFVDGKFGPYVWKTYKEVYEEVLQIVSALRASGAEPGCRVGIYGANCPQWVEAME  119 (660)
Q Consensus        40 ~~~ti~~~l~~~a~~~pd~~a~~~~~~~d~~~~~~~~~Ty~ql~~~v~~lA~~L~~~Gl~~gd~V~l~~~n~~e~~~~~l  119 (660)
                      ...++.++|+++++++||++|+++.   +      +++||+||.++++++|.+|.+.|+++||+|+++++|++++++++|
T Consensus        37 ~~~~l~~~l~~~a~~~p~~~Al~~~---~------~~~Ty~eL~~~~~~lA~~L~~~Gv~~gd~V~i~~~n~~e~~~~~l  107 (563)
T 1amu_A           37 RDKTIHQLFEEQVSKRPNNVAIVCE---N------EQLTYHELNVKANQLARIFIEKGIGKDTLVGIMMEKSIDLFIGIL  107 (563)
T ss_dssp             TTCCHHHHHHHHHHHCTTSEEEEET---T------EEEEHHHHHHHHHHHHHHHHHTTCCTTCEEEEECCSSHHHHHHHH
T ss_pred             CCCcHHHHHHHHHHHCCCCeEEEeC---C------ceecHHHHHHHHHHHHHHHHHcCCCCCCEEEEEeCCCHHHHHHHH
Confidence            3578999999999999999999865   3      689999999999999999999999999999999999999999999


Q ss_pred             HHHhCCCeEEecCCCCChhHHHHHHhcccceEEEEccchhhhhhccccccccCccEEEEecCCcHHHHHHHhhCCcceee
Q 006111          120 ACNALSLICVPLYDTLGPGAVNFILDHAEIDFVFVQDKKVKELLSPDCRSAQRLRVMVCFTSLTAEQKEMAVQTGIKPYS  199 (660)
Q Consensus       120 A~~~~G~~~vpl~~~~~~~~l~~~l~~~~~~~ii~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~  199 (660)
                      ||+++|++++|+++.++.+++.+++++++++++|++......+....     ....+..++...                
T Consensus       108 A~~~~Gav~vpl~~~~~~~~l~~il~~~~~~~li~~~~~~~~~~~~~-----~~~~~~~~~~~~----------------  166 (563)
T 1amu_A          108 AVLKAGGAYVPIDIEYPKERIQYILDDSQARMLLTQKHLVHLIHNIQ-----FNGQVEIFEEDT----------------  166 (563)
T ss_dssp             HHHHTTCEEEECCTTSCHHHHHHHHHHHTCSEEEECGGGHHHHTTSC-----CCSEEEECCCST----------------
T ss_pred             HHHHhCCEEEEeCCCCcHHHHHHHHHhcCCCEEEEcCchhhhhhhcc-----ccCceeeecchh----------------
Confidence            99999999999999999999999999999999999987654432211     111222222110                


Q ss_pred             HHHHHhcCccCCccCCCCCCCceEEEEecCCCCCCCceeeecchhHHHHhhhhhhhcccccCCCCCCcEEEEecChhHHH
Q 006111          200 WDEFLHLGKVNEMEILPPQPFNICTIMYTSGTSGDPKGVVLTHETIATFVSGVDLFLDQFEDKMTVDDVYLSFLPLAHIL  279 (660)
Q Consensus       200 ~~~~~~~~~~~~~~~~~~~~~~~~~i~~TSGTTG~pK~v~~th~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~pl~~~~  279 (660)
                      +   . .. .......+..++++++|+|||||||.||+|++||+++.+.+......+     ++..+|++++++|++|..
T Consensus       167 ~---~-~~-~~~~~~~~~~~~d~a~i~~TSGTTG~PKgV~~th~~l~~~~~~~~~~~-----~~~~~d~~l~~~p~~~~~  236 (563)
T 1amu_A          167 I---K-IR-EGTNLHVPSKSTDLAYVIYTSGTTGNPKGTMLEHKGISNLKVFFENSL-----NVTEKDRIGQFASISFDA  236 (563)
T ss_dssp             T---T-TS-CCSCCCCCCCTTSEEEEEEEC-----CEEEEEESHHHHHHHHHHHHTS-----CCCTTCEEEECSCTTSTH
T ss_pred             h---c-cc-cCccCCCCCCCCCeEEEEECCCCCCCCcEEEEehHHHHHHHHHHHHhc-----CCCCCCEEEEeCCccHHH
Confidence            0   0 00 111122345678999999999999999999999999998887776666     788999999999999999


Q ss_pred             HHHHHHHHhhcCcEEEEecC----ChhhHHHHhhhhcCeEEEechHHHHHHHHHHHHHHHhhchHHHHHHHHHHHHHHHH
Q 006111          280 DRVIEEYFFRRGASVGYYHG----DLNALRDDLMELKPTLLAGVPRVFEKIHEGIKKALEELRPLRRRIFDALYKYKLAW  355 (660)
Q Consensus       280 g~~~~l~~l~~G~~~v~~~~----~~~~~~~~i~~~~~t~~~~~p~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  355 (660)
                      ++..++.+++.|+++++.+.    ++..+++.++++++|+++++|+++..+...                          
T Consensus       237 ~~~~~~~~l~~G~~~v~~~~~~~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~--------------------------  290 (563)
T 1amu_A          237 SVWEMFMALLTGASLYIILKDTINDFVKFEQYINQKEITVITLPPTYVVHLDPE--------------------------  290 (563)
T ss_dssp             HHHHHHHHHTTTCEEEECCHHHHTCHHHHHHHHHHTTCCEEEECHHHHTTSCTT--------------------------
T ss_pred             HHHHHHHHHHCCCEEEEcChHhhcCHHHHHHHHHHcCCcEEEeCHHHHHHHHhc--------------------------
Confidence            88778889999999998863    789999999999999999999998765310                          


Q ss_pred             HhhCCCCCCcchhhhHHHHHHHHHHhCCcEeEEEEccCCCCHHHHHHHHHhcCCceeeecCCCCCCCceecccCCC--cc
Q 006111          356 MNMGYKQREASPLADLLAFRKVKARLGGRLRLVISGGAPLSTEVEEFLRVTCCAFLVQGYGLTETCGPTTVCFPDE--MC  433 (660)
Q Consensus       356 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lr~i~~~G~~l~~~~~~~~~~~~~~~v~~~YG~tE~~~~~~~~~~~~--~~  433 (660)
                                               ..+++|.+++||+++++++.+.|.+  .+++++.||+||++..++......  ..
T Consensus       291 -------------------------~~~~lr~~~~gG~~l~~~~~~~~~~--~~~~~~~YG~TE~~~~~~~~~~~~~~~~  343 (563)
T 1amu_A          291 -------------------------RILSIQTLITAGSATSPSLVNKWKE--KVTYINAYGPTETTICATTWVATKETIG  343 (563)
T ss_dssp             -------------------------TCCSCSEEEEESSCCCHHHHHHHTT--TSEEEEEECCGGGSSCSEEEECCSSCCC
T ss_pred             -------------------------ccccccEEEEEEecCCHHHHHHHHh--CCeEEEEECcCHHhHhheeeecccccCC
Confidence                                     0148999999999999999999876  478999999999998766544322  22


Q ss_pred             ccCccCCCccCeeEEeeecCCCCCCCCCCCCCceEEEccCCcccccCCCchhhhhccc-------CCccccCceEEECCC
Q 006111          434 MVGTAGPVSVYSELRLEEVPEMGYSPLDDPPCGEVCVRGKTLFSGYYKNPDLTRESII-------DGWFHTGDIGQILPN  506 (660)
Q Consensus       434 ~~~~~G~~~~~~~v~ivd~~~~~~~~~~~~~~Gei~v~g~~~~~gy~~~~~~~~~~~~-------~g~~~TGDl~~~~~~  506 (660)
                      ...++|+|+++++++|+| +++..  ++.|+.|||+|+||+++.||+++++.+.+.|.       ++||+|||+|++|+|
T Consensus       344 ~~~~vG~p~~~~~v~i~d-~~~~~--~~~g~~GEl~v~g~~v~~GY~~~pe~t~~~f~~~~~~~g~~w~~TGDlg~~d~d  420 (563)
T 1amu_A          344 HSVPIGAPIQNTQIYIVD-ENLQL--KSVGEAGELCIGGEGLARGYWKRPELTSQKFVDNPFVPGEKLYKTGDQARWLSD  420 (563)
T ss_dssp             SSCCCBEECTTEEEEEEC-TTSCB--CCTTCEEEEEEEETTCCCEETTCHHHHHHHEEECSSSTTSEEEEEEEEEEECTT
T ss_pred             CCCcccceeCCCEEEEEC-CCcCC--CCCCCcEEEEEechhhChhhCCCchhhhhhcccCCCCCCCEEEecCCEEEEcCC
Confidence            447899999999999999 76654  44568999999999999999999999999883       259999999999999


Q ss_pred             CcEEEEeccCCeeEcCCCeeecchhHHHHHhcCcCcceEEEEecCCC---CeEEEEEEcChhhHHHHHHHCCCCCcHHHH
Q 006111          507 GVVKIIDRKKNLIKISQGEYVALEYLENVYCVAPIIEDIWVYGDSLK---SMLVAVVVPCEEDTKKWAYSNGHAGSFLEL  583 (660)
Q Consensus       507 G~l~~~GR~~d~i~~~~G~~v~~~~iE~~l~~~p~V~~~~V~~~~~~---~~~~a~v~~~~~~~~~~~~~~~~~~~~~~~  583 (660)
                      |+|+++||.||+||+ +|++|+|.+||++|.+||+|.+|+|++.+++   +.++|+|++..+.                 
T Consensus       421 G~l~i~GR~~d~Ik~-~G~~V~p~eIE~~l~~~p~V~~a~Vv~~~~~~~~~~~~a~vv~~~~~-----------------  482 (563)
T 1amu_A          421 GNIEYLGRIDNQVKI-RGHRVELEEVESILLKHMYISETAVSVHKDHQEQPYLCAYFVSEKHI-----------------  482 (563)
T ss_dssp             SCEEEEEEGGGEEEE-TTEEEEHHHHHHHHTTSTTEEEEEEEEEECTTSCEEEEEEEEESSCC-----------------
T ss_pred             CeEEEeccccCEEEE-CCEEeCHHHHHHHHHhCCCcceEEEEEeecCCCCeEEEEEEEeCCCC-----------------
Confidence            999999999999997 8999999999999999999999999987654   3788998876421                 


Q ss_pred             hccHHHHHHHHHHHHHHHHhCCCCCceeeeEEEEecCCCCCCCCccccccccchHHHHHHH
Q 006111          584 CSLVQLQNYILSELKNAAERNKLRGFEHIKGVILDPRPFDMERDLVTATLKKKRNKLLIYY  644 (660)
Q Consensus       584 ~~~~~~~~~~~~~l~~~~~~~~l~~~~~p~~i~~~~~~~~~~~~P~t~~GKv~R~~l~~~~  644 (660)
                       +        .++|+++++ .+||.|++|+.|++++      .+|+|++||++|++|++.+
T Consensus       483 -~--------~~~l~~~l~-~~L~~y~~P~~i~~v~------~lP~t~~GKi~r~~L~~~~  527 (563)
T 1amu_A          483 -P--------LEQLRQFSS-EELPTYMIPSYFIQLD------KMPLTSNGKIDRKQLPEPD  527 (563)
T ss_dssp             -C--------HHHHHHHHH-HHSCGGGSCSEEEECS------SCCBCTTSSBCGGGSCCCC
T ss_pred             -C--------HHHHHHHHH-hhCchhhCCcEEEEec------ccCCCCCcChhHHhcCCcc
Confidence             1        123444444 6799999999999874      4699999999999998754

>3ipl_A 2-succinylbenzoate--COA ligase; structural genomics, acyl-protein synthetase, PSI-2, protein structure initiative; 2.30A {Staphylococcus aureus subsp}

Probab=100.00  E-value=2.7e-71  Score=606.24  Aligned_cols=491  Identities=22%  Similarity=0.213  Sum_probs=374.3

Q ss_pred             cHHHHHHHHHHhCCCCCceeeeccccCCCCCceEEeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEeCCchhHHHHHHHHH
Q 006111           43 TAWDIFSMSVQKYPGNRMLGWRPFVDGKFGPYVWKTYKEVYEEVLQIVSALRASGAEPGCRVGIYGANCPQWVEAMEACN  122 (660)
Q Consensus        43 ti~~~l~~~a~~~pd~~a~~~~~~~d~~~~~~~~~Ty~ql~~~v~~lA~~L~~~Gl~~gd~V~l~~~n~~e~~~~~lA~~  122 (660)
                      ||.++|+++++++||++|+++.   +      +++||+||.++++++|++|++.   +||+|+++++|++++++++|||+
T Consensus         2 tl~~~l~~~a~~~pd~~Al~~~---~------~~~Ty~eL~~~~~~lA~~L~~~---~gd~V~i~~~n~~e~~~~~lA~~   69 (501)
T 3ipl_A            2 SLDFWLYKQAQQNGHHIAITDG---Q------ESYTYQNLYCEASLLAKRLKAY---QQSRVGLYIDNSIQSIILIHACW   69 (501)
T ss_dssp             -CCCHHHHHHHHHTTSEEEECS---S------CEEEHHHHHHHHHHHHHHHHTT---CCSEEEEECCSSHHHHHHHHHHH
T ss_pred             CHHHHHHHHHHhcCCceEEEeC---C------cEEEHHHHHHHHHHHHHHHHHc---CCCEEEEEcCCCHHHHHHHHHHH
Confidence            6778999999999999999875   3      5899999999999999999986   89999999999999999999999


Q ss_pred             hCCCeEEecCCCCChhHHHHHHhcccceEEEEccchhhhhhccccccccCccEEEEecCCcHHHHHHHhhCCcce-eeHH
Q 006111          123 ALSLICVPLYDTLGPGAVNFILDHAEIDFVFVQDKKVKELLSPDCRSAQRLRVMVCFTSLTAEQKEMAVQTGIKP-YSWD  201 (660)
Q Consensus       123 ~~G~~~vpl~~~~~~~~l~~~l~~~~~~~ii~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~-~~~~  201 (660)
                      ++|++++|+++.++.+++.++++.++++++|++............  ......+.........   ......... ....
T Consensus        70 ~~Gav~vpl~~~~~~~~l~~~l~~~~~~~li~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~  144 (501)
T 3ipl_A           70 LANIEIAMINTRLTPNEMTNQMRSIDVQLIFCTLPLELRGFQIVS--LDDIEFAGRDITTNGL---LDNTMGIQYDTSNE  144 (501)
T ss_dssp             HTTCEEEECCTTSCHHHHHHHHHHTTCCEEEESSCCCCTTSEEEE--TTC------------------------------
T ss_pred             HcCCEEEecCccCCHHHHHHHHHhcCCCEEEEccccccccccccc--cccceeeeeecccccc---cccccccccccchh
Confidence            999999999999999999999999999999999876543322111  0111111110000000   000000000 0011


Q ss_pred             HHHhcCccCCccCCCCCCCceEEEEecCCCCCCCceeeecchhHHHHhhhhhhhcccccCCCCCCcEEEEecChhHHHHH
Q 006111          202 EFLHLGKVNEMEILPPQPFNICTIMYTSGTSGDPKGVVLTHETIATFVSGVDLFLDQFEDKMTVDDVYLSFLPLAHILDR  281 (660)
Q Consensus       202 ~~~~~~~~~~~~~~~~~~~~~~~i~~TSGTTG~pK~v~~th~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~pl~~~~g~  281 (660)
                      .+...............++++++|+|||||||.||+|.+||+++.+.+......+     ++..++++++++|++|.+|+
T Consensus       145 ~~~~~~~~~~~~~~~~~~~d~a~i~~TSGTTG~PKgv~~th~~~~~~~~~~~~~~-----~~~~~d~~l~~~p~~~~~g~  219 (501)
T 3ipl_A          145 TVVPKESPSNILNTSFNLDDIASIMFTSGTTGPQKAVPQTFRNHYASAIGCKESL-----GFDRDTNWLSVLPIYHISGL  219 (501)
T ss_dssp             -----CCHHHHTCCCCCTTSEEEEEECCTTTSCCCEEEEEHHHHHHHHHHHHHHT-----CCCTTCEEEECSCTTSHHHH
T ss_pred             hccccCCcccccccCCCCCCeEEEEECCCCCCCCcEEEEeHHHHHHHHHHHHHhh-----CCCccCEEEEeCcHHHHHHH
Confidence            1111111111223345789999999999999999999999999999998887777     88999999999999999999


Q ss_pred             HHHHHHhhcCcEEEEecC-ChhhHHHHhhhhcCeEEEechHHHHHHHHHHHHHHHhhchHHHHHHHHHHHHHHHHHhhCC
Q 006111          282 VIEEYFFRRGASVGYYHG-DLNALRDDLMELKPTLLAGVPRVFEKIHEGIKKALEELRPLRRRIFDALYKYKLAWMNMGY  360 (660)
Q Consensus       282 ~~~l~~l~~G~~~v~~~~-~~~~~~~~i~~~~~t~~~~~p~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  360 (660)
                      ...+.+++.|+++++.+. ++..+++.|+++++|+++++|+++..|.+....                            
T Consensus       220 ~~~~~~l~~G~~~~~~~~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~----------------------------  271 (501)
T 3ipl_A          220 SVLLRAVIEGFTVRIVDKFNAEQILTMIKNERITHISLVPQTLNWLMQQGLH----------------------------  271 (501)
T ss_dssp             HHHHHHHHHTCEEEECSSCCHHHHHHHHHHSCCCEEEECHHHHHHHHHHTCC----------------------------
T ss_pred             HHHHHHHHcCceEEeCCCCCHHHHHHHHHHcCCcEEEchHHHHHHHHhcCCC----------------------------
Confidence            888889999999999876 999999999999999999999999988653110                            


Q ss_pred             CCCCcchhhhHHHHHHHHHHhCCcEeEEEEccCCCCHHHHHHHHHhcCCceeeecCCCCCCCceecccCCC-ccccCccC
Q 006111          361 KQREASPLADLLAFRKVKARLGGRLRLVISGGAPLSTEVEEFLRVTCCAFLVQGYGLTETCGPTTVCFPDE-MCMVGTAG  439 (660)
Q Consensus       361 ~~~~~~~~~~~~~~~~~~~~~~~~lr~i~~~G~~l~~~~~~~~~~~~~~~v~~~YG~tE~~~~~~~~~~~~-~~~~~~~G  439 (660)
                                          ...++|.+++||+++++++.+.+.+ +++++++.||+||+++.++...... ....+++|
T Consensus       272 --------------------~~~~lr~i~~gG~~l~~~~~~~~~~-~~~~~~~~YG~TE~~~~~~~~~~~~~~~~~~~~G  330 (501)
T 3ipl_A          272 --------------------EPYNLQKILLGGAKLSATMIETALQ-YNLPIYNSFGMTETCSQFLTATPEMLHARPDTVG  330 (501)
T ss_dssp             --------------------SCTTCCEEEECSSCCCHHHHHHHHH-TTCCEEEEEEEGGGTEEEEEECHHHHHHCTTCCB
T ss_pred             --------------------CcCcccEEEEeCCCCCHHHHHHHHH-hCCCEeccccccccccceeecCccccccCCCCCC
Confidence                                0027899999999999999999987 5999999999999987655443322 33457899


Q ss_pred             CCccCeeEEeeecCCCCCCCCCCCCCceEEEccCCcccccCCCchhhhhcccCCccccCceEEECCCCcEEEEeccCCee
Q 006111          440 PVSVYSELRLEEVPEMGYSPLDDPPCGEVCVRGKTLFSGYYKNPDLTRESIIDGWFHTGDIGQILPNGVVKIIDRKKNLI  519 (660)
Q Consensus       440 ~~~~~~~v~ivd~~~~~~~~~~~~~~Gei~v~g~~~~~gy~~~~~~~~~~~~~g~~~TGDl~~~~~~G~l~~~GR~~d~i  519 (660)
                      .|+++++++++| ++       .++.|||+|+|+.++.||+++++.+.. |.+|||+|||+|++|+||+++++||.||+|
T Consensus       331 ~p~~~~~~~i~d-~~-------~~~~GEl~v~g~~~~~gY~~~~~~t~~-~~~g~~~TGDl~~~~~~G~l~~~GR~dd~i  401 (501)
T 3ipl_A          331 MPSANVDVKIKN-PN-------KEGHGELMIKGANVMNGYLYPTDLTGT-FENGYFNTGDIAEIDHEGYVMIYDRRKDLI  401 (501)
T ss_dssp             EECTTCEEEEES-CC-------SSCCEEEEEESTTSCSCCSBSTTCCCS-EETTEEEEEEEEEECTTSCEEEEEECCCCE
T ss_pred             CCCCCcEEEEec-CC-------CCCccEEEEeccchhhhhCcChhhcch-hcCCceecCCEEEEcCCCeEEEEccccceE
Confidence            999999999999 44       235799999999999999999998887 889999999999999999999999999999


Q ss_pred             EcCCCeeecchhHHHHHhcCcCcceEEEEecCCC---CeEEEEEEcChhhHHHHHHHCCCCCcHHHHhccHHHHHHHHHH
Q 006111          520 KISQGEYVALEYLENVYCVAPIIEDIWVYGDSLK---SMLVAVVVPCEEDTKKWAYSNGHAGSFLELCSLVQLQNYILSE  596 (660)
Q Consensus       520 ~~~~G~~v~~~~iE~~l~~~p~V~~~~V~~~~~~---~~~~a~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  596 (660)
                      |+ +|++|+|.+||++|.+||+|.+|+|++.+++   +.++++++...+.                  +.        ++
T Consensus       402 k~-~G~~v~p~eiE~~l~~~p~V~~~~vv~~~~~~~g~~~~a~v~~~~~~------------------~~--------~~  454 (501)
T 3ipl_A          402 IS-GGENIYPYQIETVAKQFPGISDAVCVGHPDDTWGQVPKLYFVSESDI------------------SK--------AQ  454 (501)
T ss_dssp             EC-SSCEECHHHHHHHHTTSTTEEEEEEEEEEETTTEEEEEEEEEESSCC------------------CH--------HH
T ss_pred             EE-CCEEECHHHHHHHHHhCCCccEEEEEEEecccCCceEEEEEEeCCCC------------------CH--------HH
Confidence            96 8999999999999999999999999987654   3778888865432                  11        23


Q ss_pred             HHHHHHhCCCCCceeeeEEEEecCCCCCCCCccccccccchHHHHHHHHHH
Q 006111          597 LKNAAERNKLRGFEHIKGVILDPRPFDMERDLVTATLKKKRNKLLIYYQVE  647 (660)
Q Consensus       597 l~~~~~~~~l~~~~~p~~i~~~~~~~~~~~~P~t~~GKv~R~~l~~~~~~~  647 (660)
                      |+++++ .+||.|++|+.|+++      +.+|+|++||++|++|++.+.++
T Consensus       455 l~~~l~-~~L~~~~~P~~i~~v------~~lP~t~~GKi~R~~l~~~~~~~  498 (501)
T 3ipl_A          455 LIAYLS-KHLAKYKVPKHFEKV------DTLPYTSTGKLQRNKLYREGHHH  498 (501)
T ss_dssp             HHHHHH-HHSCGGGSCSEEEEC------SSCC-------------------
T ss_pred             HHHHHH-hhCccccCCCEEEEe------cccCCCCCCCEeHHHHhhccccc
Confidence            444444 579999999999987      44699999999999999888654

>3tsy_A Fusion protein 4-coumarate--COA ligase 1, resvera synthase; transferase; 3.10A {Arabidospis thaliana}

Probab=100.00  E-value=4.6e-71  Score=650.09  Aligned_cols=540  Identities=24%  Similarity=0.308  Sum_probs=345.4

Q ss_pred             CCCCCCCCceeccccCCCCCCCCCCCCcHHHHHHHHHHhCCCCCceeeeccccCCCCCceEEeHHHHHHHHHHHHHHHHH
Q 006111           16 DGKPSVGPVYRNLLASNGFPSVDSDLNTAWDIFSMSVQKYPGNRMLGWRPFVDGKFGPYVWKTYKEVYEEVLQIVSALRA   95 (660)
Q Consensus        16 ~~~~~~~~~~~~~~~~~~~~~~~~~~~ti~~~l~~~a~~~pd~~a~~~~~~~d~~~~~~~~~Ty~ql~~~v~~lA~~L~~   95 (660)
                      .+.+....+|++...+..+    +...|+.++|.++++++||++|+++.   +..    +++||+||.++++++|++|++
T Consensus        39 ~~~~~~~~~~~~~~~~~~~----p~~~tl~~~l~~~a~~~pd~~Al~~~---~~~----~~~TY~eL~~~~~~lA~~L~~  107 (979)
T 3tsy_A           39 SNNNNSDVIFRSKLPDIYI----PNHLSLHDYIFQNISEFATKPCLING---PTG----HVYTYSDVHVISRQIAANFHK  107 (979)
T ss_dssp             ------CCCBCCSSCCCCC----CTTSCHHHHHTTTGGGTTTSEEEEET---TTC----CEEEHHHHHHHHHHHHHHHHH
T ss_pred             ccCCCCCceeecCCCCCCC----CCCCCHHHHHHHHHHhCCCCeEEEEC---CCC----cEEEHHHHHHHHHHHHHHHHH
Confidence            3344556667765433322    34589999999999999999999875   321    689999999999999999999


Q ss_pred             cCCCCCCEEEEEeCCchhHHHHHHHHHhCCCeEEecCCCCChhHHHHHHhcccceEEEEccchhhhhhccccccccCccE
Q 006111           96 SGAEPGCRVGIYGANCPQWVEAMEACNALSLICVPLYDTLGPGAVNFILDHAEIDFVFVQDKKVKELLSPDCRSAQRLRV  175 (660)
Q Consensus        96 ~Gl~~gd~V~l~~~n~~e~~~~~lA~~~~G~~~vpl~~~~~~~~l~~~l~~~~~~~ii~~~~~~~~~~~~~~~~~~~~~~  175 (660)
                      .|+++||+|+++++|++++++++|||+++|++++|++|.++.+++.++++.++++++|++......+......  .. ..
T Consensus       108 ~Gv~~gd~V~i~~~ns~e~~v~~lA~~~~Ga~~vpl~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~~~--~~-~~  184 (979)
T 3tsy_A          108 LGVNQNDVVMLLLPNCPEFVLSFLAASFRGATATAANPFFTPAEIAKQAKASNTKLIITEARYVDKIKPLQND--DG-VV  184 (979)
T ss_dssp             TTCCTTCEEEEECSSCHHHHHHHHHHHHHTCEEEEECTTSCHHHHHHHHHHHTEEEEEECSTTTTTSHHHHHT--SC-CE
T ss_pred             cCCCCcCEEEEEeCCCHHHHHHHHHHHHcCCEEEeeCCCCCHHHHHHHHHHcCCeEEEEChHHHHHHHHHhhc--CC-ce
Confidence            9999999999999999999999999999999999999999999999999999999999998766544332211  11 23


Q ss_pred             EEEecCCcHHHHHHHhhCCcceeeHHHHHhcCcc--CCccCCCCCCCceEEEEecCCCCCCCceeeecchhHHHHhhhhh
Q 006111          176 MVCFTSLTAEQKEMAVQTGIKPYSWDEFLHLGKV--NEMEILPPQPFNICTIMYTSGTSGDPKGVVLTHETIATFVSGVD  253 (660)
Q Consensus       176 i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~i~~TSGTTG~pK~v~~th~~l~~~~~~~~  253 (660)
                      ++.+++...      .........+.++......  ...+.....++++++|+|||||||.||+|+++|+++++.+....
T Consensus       185 ~~~~~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~a~i~~TSGTTG~PKgV~~sh~~l~~~~~~~~  258 (979)
T 3tsy_A          185 IVCIDDNES------VPIPEGCLRFTELTQSTTEASEVIDSVEISPDDVVALPYSSGTTGLPKGVMLTHKGLVTSVAQQV  258 (979)
T ss_dssp             EEECCCCTT------SCCCTTEEEGGGTSSCCSGGGGGSCCSCCCTTSEEECCBCCCSSSSCCBEEEEHHHHHHHHHHHH
T ss_pred             EEEeCCccc------ccCCcccccHHHHhhccccccccCCcCCCCccceEEEEeCCCCCCCCeEEEechHHHHHHHHHHH
Confidence            444443210      0011224455555443322  12233456789999999999999999999999999998876644


Q ss_pred             hhcccccCCCCCCcEEEEecChhHHHHHHH-HHHHhhcCcEEEEecC-ChhhHHHHhhhhcCeEEEechHHHHHHHHHHH
Q 006111          254 LFLDQFEDKMTVDDVYLSFLPLAHILDRVI-EEYFFRRGASVGYYHG-DLNALRDDLMELKPTLLAGVPRVFEKIHEGIK  331 (660)
Q Consensus       254 ~~~~~~~~~~~~~~~~l~~~pl~~~~g~~~-~l~~l~~G~~~v~~~~-~~~~~~~~i~~~~~t~~~~~p~~~~~l~~~~~  331 (660)
                      .... ....+..++++++.+|++|.+++.. .+.++..|+++++.+. ++..+++.|+++++|+++++|+++..+.+...
T Consensus       259 ~~~~-~~~~~~~~d~~l~~~p~~h~~~~~~~~~~~l~~G~~~v~~~~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~  337 (979)
T 3tsy_A          259 DGEN-PNLYFHSDDVILCVLPMFHIYALNSIMLCGLRVGAAILIMPKFEINLLLELIQRCKVTVAPMVPPIVLAIAKSSE  337 (979)
T ss_dssp             CSSS-CSSCCCSSCEEEECSCSSSHHHHHHTHHHHHHHTCEEEECSSCCHHHHHHHHHHHTCCEEEECHHHHHHHHHCGG
T ss_pred             Hhhc-ccccCCCCCEEEEECchHHHHHHHHHHHHHHhcCcEEEEeCCCCHHHHHHHHHHhCCeEEEcHHHHHHHHHhCcc
Confidence            3211 0125788999999999999999965 6777999999999876 99999999999999999999999998865211


Q ss_pred             HHHHhhchHHHHHHHHHHHHHHHHHhhCCCCCCcchhhhHHHHHHHHHHhCCcEeEEEEccCCCCHHHHHHHHHhc-CCc
Q 006111          332 KALEELRPLRRRIFDALYKYKLAWMNMGYKQREASPLADLLAFRKVKARLGGRLRLVISGGAPLSTEVEEFLRVTC-CAF  410 (660)
Q Consensus       332 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lr~i~~~G~~l~~~~~~~~~~~~-~~~  410 (660)
                                                           ....+        +++||.+++||+++++++.+++.+.+ +++
T Consensus       338 -------------------------------------~~~~~--------l~~lr~~~~gg~~l~~~~~~~~~~~~~~~~  372 (979)
T 3tsy_A          338 -------------------------------------TEKYD--------LSSIRVVKSGAAPLGKELEDAVNAKFPNAK  372 (979)
T ss_dssp             -------------------------------------GGTSC--------CTTCCEEEESSCCCCSSHHHHHHHHCTTCE
T ss_pred             -------------------------------------ccCCC--------ccceEEEEEcCCCCCHHHHHHHHHHCCCCe
Confidence                                                 11111        24899999999999999999999988 899


Q ss_pred             eeeecCCCCCCCceeccc----CCCccccCccCCCccCeeEEeeecCCCCCCCCCCCCCceEEEccCCcccccCCCchhh
Q 006111          411 LVQGYGLTETCGPTTVCF----PDEMCMVGTAGPVSVYSELRLEEVPEMGYSPLDDPPCGEVCVRGKTLFSGYYKNPDLT  486 (660)
Q Consensus       411 v~~~YG~tE~~~~~~~~~----~~~~~~~~~~G~~~~~~~v~ivd~~~~~~~~~~~~~~Gei~v~g~~~~~gy~~~~~~~  486 (660)
                      +++.||+||++.+++...    .......+++|.|+++++++|+| ++++ .+++.|+.|||+|+||+++.||+++++.+
T Consensus       373 l~~~YG~TE~~~~~~~~~~~~~~~~~~~~~~~G~p~~~~~~~i~d-~~~~-~~~~~g~~GEl~i~g~~v~~GY~~~p~~t  450 (979)
T 3tsy_A          373 LGQGYGMTEAGPVLAMSLGFAKEPFPVKSGACGTVVRNAEMKIVD-PDTG-DSLSRNQPGEICIRGHQIMKGYLNNPAAT  450 (979)
T ss_dssp             EEECEECGGGCSEEEECGGGSSSCCCCCTTCCCEECSSCEEEEEC-TTSC-CBCCTTCCEEEEEESTTSCSEETTCHHHH
T ss_pred             EEeeechhhhhHHHHhCCCCCCCccccCCCCcCcccCCcEEEEEe-CCCC-CCCCCCCccEEEEECCCccccccCChhhh
Confidence            999999999998766542    12233458999999999999999 5433 34556789999999999999999999999


Q ss_pred             hhcc-cCCccccCceEEECCCCcEEEEeccCCeeEcCCCeeecchhHHHHHhcCcCcceEEEEecCCC---CeEEEEEEc
Q 006111          487 RESI-IDGWFHTGDIGQILPNGVVKIIDRKKNLIKISQGEYVALEYLENVYCVAPIIEDIWVYGDSLK---SMLVAVVVP  562 (660)
Q Consensus       487 ~~~~-~~g~~~TGDl~~~~~~G~l~~~GR~~d~i~~~~G~~v~~~~iE~~l~~~p~V~~~~V~~~~~~---~~~~a~v~~  562 (660)
                      .+.| .+|||+|||+|++|+||.|+++||.||+||+ +|++|+|.+||++|.+||+|.+|+|++.+++   +.++|+|+.
T Consensus       451 ~~~f~~~g~~~TGDl~~~~~dG~l~~~GR~dd~ik~-~G~~v~~~eIE~~l~~~p~V~~~~Vv~~~~~~~g~~~~a~vv~  529 (979)
T 3tsy_A          451 AETIDKDGWLHTGDIGLIDDDDELFIVDRLKELIKY-KGFQVAPAELEALLIGHPDITDVAVVAMKEEAAGEVPVAFVVK  529 (979)
T ss_dssp             HHHBCTTSCEEEEEEEEECTTSCEEEEEESCC------------------------------------------------
T ss_pred             hhhccCCCcEEcCCEEEEcCCceEEEecCCCCEEEE-CCEEECHHHHHHHHHhCCCcceEEEEEecccCCCcEEEEEEEE
Confidence            9999 7999999999999999999999999999998 7999999999999999999999999987654   478899887


Q ss_pred             ChhhHHHHHHHCCCCCcHHHHhccHHHHHHHHHHHHHHHHhCCCCCceeeeEEEEecCCCCCCCCccccccccchHHHHH
Q 006111          563 CEEDTKKWAYSNGHAGSFLELCSLVQLQNYILSELKNAAERNKLRGFEHIKGVILDPRPFDMERDLVTATLKKKRNKLLI  642 (660)
Q Consensus       563 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~l~~~~~p~~i~~~~~~~~~~~~P~t~~GKv~R~~l~~  642 (660)
                      .++..        .        .        .++|+++++ .+||.|++|+.++++      +.+|+|++||++|++|++
T Consensus       530 ~~~~~--------~--------~--------~~~l~~~l~-~~l~~~~~p~~i~~v------~~lP~t~~GKi~r~~L~~  578 (979)
T 3tsy_A          530 SKDSE--------L--------S--------EDDVKQFVS-KQVVFYKRINKVFFT------ESIPKAPSGKILRKDLRA  578 (979)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             CCCCC--------C--------C--------HHHHHHHHH-HhcccccCCeEEEEe------CCcCcCCCCCeeHHHHHH
Confidence            76431        0        0        123444444 789999999998886      446999999999999999


Q ss_pred             HHHHHHHHHHhhh
Q 006111          643 YYQVEIDQLYEKL  655 (660)
Q Consensus       643 ~~~~~i~~~y~~~  655 (660)
                      +|.+.+...|..+
T Consensus       579 ~~~~~~~~~~~~~  591 (979)
T 3tsy_A          579 KLANGLGSGMASV  591 (979)
T ss_dssp             ----------CCH
T ss_pred             HHHhhcCCccccc
Confidence            9999888887654

>3nyq_A Malonyl-COA ligase; A/B topology ababa sandwich beta-barrel adenylate-forming EN fold; HET: MCA AMP; 1.43A {Streptomyces coelicolor} PDB: 3nyr_A*

Probab=100.00  E-value=4e-71  Score=603.87  Aligned_cols=478  Identities=25%  Similarity=0.295  Sum_probs=373.9

Q ss_pred             CCCCCcHHHHHHHHHHhCCC-CCceeeeccccCCCCCceEEeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEeCCchhHHH
Q 006111           38 DSDLNTAWDIFSMSVQKYPG-NRMLGWRPFVDGKFGPYVWKTYKEVYEEVLQIVSALRASGAEPGCRVGIYGANCPQWVE  116 (660)
Q Consensus        38 ~~~~~ti~~~l~~~a~~~pd-~~a~~~~~~~d~~~~~~~~~Ty~ql~~~v~~lA~~L~~~Gl~~gd~V~l~~~n~~e~~~  116 (660)
                      ...|.++.+.|.++++++|+ ++|+++.   +      +++||+||.++++++|.+|.     .|++|+++++|++++++
T Consensus        18 ~~~~~tl~~~l~~~a~~~p~d~~Al~~~---~------~~~Ty~eL~~~~~~~A~~L~-----~~~~V~i~~~~~~~~~~   83 (505)
T 3nyq_A           18 GSHMSSLFPALSPAPTGAPADRPALRFG---E------RSLTYAELAAAAGATAGRIG-----GAGRVAVWATPAMETGV   83 (505)
T ss_dssp             ------CCTTTSSCCCSGGGGSEEEEET---T------EEEEHHHHHHHHHHHHTTCC--------CEEEECCSSHHHHH
T ss_pred             CcccchhHHHHHHHHHhCCCCCeEEEEC---C------eeeeHHHHHHHHHHHHhhcc-----CCCEEEEEcCCCHHHHH
Confidence            34588999999999999887 9999875   3      68999999999999998774     48899999999999999


Q ss_pred             HHHHHHhCCCeEEecCCCCChhHHHHHHhcccceEEEEccchhhhhhccccccccCccEEEEecCCcHHHHHHHhhCCcc
Q 006111          117 AMEACNALSLICVPLYDTLGPGAVNFILDHAEIDFVFVQDKKVKELLSPDCRSAQRLRVMVCFTSLTAEQKEMAVQTGIK  196 (660)
Q Consensus       117 ~~lA~~~~G~~~vpl~~~~~~~~l~~~l~~~~~~~ii~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~  196 (660)
                      ++|||+++|++++|++|.++.+++.+++++++++++|++.....      ......+..+ ..+..              
T Consensus        84 ~~la~~~~Ga~~vpl~~~~~~~~l~~il~~~~~~~vi~~~~~~~------~~~~~~~~~~-~~~~~--------------  142 (505)
T 3nyq_A           84 AVVAALLAGVAAVPLNPKSGDKELAHILSDSAPSLVLAPPDAEL------PPALGALERV-DVDVR--------------  142 (505)
T ss_dssp             HHHHHHHHTCCEEEECTTCCHHHHHHHHHHHCCSEEEECTTCCC------CGGGTTSEEE-ECCTT--------------
T ss_pred             HHHHHHHhCCEEEEcCCCCCHHHHHHHHHHCCCCEEEECCcccc------chhhcccccc-ccccc--------------
Confidence            99999999999999999999999999999999999999865211      0011111111 11100              


Q ss_pred             eeeHHHHHhcCccCCccCCCCCCCceEEEEecCCCCCCCceeeecchhHHHHhhhhhhhcccccCCCCCCcEEEEecChh
Q 006111          197 PYSWDEFLHLGKVNEMEILPPQPFNICTIMYTSGTSGDPKGVVLTHETIATFVSGVDLFLDQFEDKMTVDDVYLSFLPLA  276 (660)
Q Consensus       197 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~TSGTTG~pK~v~~th~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~pl~  276 (660)
                                 .....+.....++++++|+|||||||.||+|+++|+++.+.+..+...+     ++..++++++.+|++
T Consensus       143 -----------~~~~~~~~~~~~~d~a~i~~TSGTTG~PKgV~~sh~~l~~~~~~~~~~~-----~~~~~d~~l~~~p~~  206 (505)
T 3nyq_A          143 -----------ARGAVPEDGADDGDPALVVYTSGTTGPPKGAVIPRRALATTLDALADAW-----QWTGEDVLVQGLPLF  206 (505)
T ss_dssp             -----------CCCCCCCCCCCTTSEEEEEEECCSSSSCEEEEEEHHHHHHHHHHHHHHH-----TCCTTCEEEECCCTT
T ss_pred             -----------cccCCCCCCCCCCCeEEEEeCCCCcCCCCeEEEeHHHHHHHHHHHHHHh-----CCCCCcEEEEeccHH
Confidence                       0112223445789999999999999999999999999999999888777     889999999999999


Q ss_pred             HHHHHHH-HHHHhhcCcEEEEecC-ChhhHHHHhhhhcCeEEEechHHHHHHHHHHHHHHHhhchHHHHHHHHHHHHHHH
Q 006111          277 HILDRVI-EEYFFRRGASVGYYHG-DLNALRDDLMELKPTLLAGVPRVFEKIHEGIKKALEELRPLRRRIFDALYKYKLA  354 (660)
Q Consensus       277 ~~~g~~~-~l~~l~~G~~~v~~~~-~~~~~~~~i~~~~~t~~~~~p~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~  354 (660)
                      |..|+.. ++.++..|+++++.+. ++..+++.+ ++++|+++++|+++..+.+.......                   
T Consensus       207 ~~~g~~~~~~~~l~~G~~~~~~~~~~~~~~~~~i-~~~~t~~~~~P~~~~~l~~~~~~~~~-------------------  266 (505)
T 3nyq_A          207 HVHGLVLGILGPLRRGGSVRHLGRFSTEGAAREL-NDGATMLFGVPTMYHRIAETLPADPE-------------------  266 (505)
T ss_dssp             SHHHHTTTTHHHHHHTCEEEECSSCCHHHHHHHH-TTTCCEEEECHHHHHHHHHHGGGCHH-------------------
T ss_pred             HHHHHHHHHHHHHhcCCEEEECCCCChHHHHHHH-hhCCeEEEehHHHHHHHHHhhhcCch-------------------
Confidence            9999875 6788999999998876 889999999 88999999999999998764321110                   


Q ss_pred             HHhhCCCCCCcchhhhHHHHHHHHHHhCCcEeEEEEccCCCCHHHHHHHHHhcCCceeeecCCCCCCCceecccCCCccc
Q 006111          355 WMNMGYKQREASPLADLLAFRKVKARLGGRLRLVISGGAPLSTEVEEFLRVTCCAFLVQGYGLTETCGPTTVCFPDEMCM  434 (660)
Q Consensus       355 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lr~i~~~G~~l~~~~~~~~~~~~~~~v~~~YG~tE~~~~~~~~~~~~~~~  434 (660)
                                     ....+        +++|.+++||+++++++.+++.+.+|+++++.||+||++..++...... ..
T Consensus       267 ---------------~~~~l--------~~lr~i~~gg~~l~~~~~~~~~~~~~~~~~~~YG~TE~~~~~~~~~~~~-~~  322 (505)
T 3nyq_A          267 ---------------LAKAL--------AGARLLVSGSAALPVHDHERIAAATGRRVIERYGMTETLMNTSVRADGE-PR  322 (505)
T ss_dssp             ---------------HHHHH--------HHCSEEEECSSCCCHHHHHHHHHHHSCCCEEEEEETTTEEEEECCTTSC-CC
T ss_pred             ---------------hhccc--------ccceEEEECCCCCCHHHHHHHHHhcCCeeecccchhhcccccccCCCCC-CC
Confidence                           00112        2889999999999999999999999999999999999997766554433 34


Q ss_pred             cCccCCCccCeeEEeeecCCCCCCCC-CCCCCceEEEccCCcccccCCCchhhhhcc-cCCccccCceEEECCCCcEEEE
Q 006111          435 VGTAGPVSVYSELRLEEVPEMGYSPL-DDPPCGEVCVRGKTLFSGYYKNPDLTRESI-IDGWFHTGDIGQILPNGVVKII  512 (660)
Q Consensus       435 ~~~~G~~~~~~~v~ivd~~~~~~~~~-~~~~~Gei~v~g~~~~~gy~~~~~~~~~~~-~~g~~~TGDl~~~~~~G~l~~~  512 (660)
                      .+++|+|+++++++|+| +++..++. +.|+.|||+|+|++++.||+++++.+.+.| .+|||+|||+|++|+||.++++
T Consensus       323 ~~~vG~p~~~~~~~i~d-~~g~~~~~~~~g~~GEl~v~g~~v~~GY~~~~~~t~~~f~~~g~y~TGDl~~~~~dG~l~~~  401 (505)
T 3nyq_A          323 AGTVGVPLPGVELRLVE-EDGTPIAALDGESVGEIQVRGPNLFTEYLNRPDATAAAFTEDGFFRTGDMAVRDPDGYVRIV  401 (505)
T ss_dssp             TTCCCEECTTCEEEEC------CCCCCCSCCCEEEEEESTTSCCEETTCHHHHHHTBCTTSCEEEEEEEEECTTSCEEEE
T ss_pred             CCCcccCCCCCEEEEEC-CCCCCcccCCCCceEEEEEecCchhhhhCCChhHhhhhhcCCCCCccCCeEEECCCccEEEe
Confidence            48999999999999999 77765554 446899999999999999999999999999 6999999999999999999999


Q ss_pred             ecc-CCeeEcCCCeeecchhHHHHHhcCcCcceEEEEecCCC---CeEEEEEEcChhhHHHHHHHCCCCCcHHHHhccHH
Q 006111          513 DRK-KNLIKISQGEYVALEYLENVYCVAPIIEDIWVYGDSLK---SMLVAVVVPCEEDTKKWAYSNGHAGSFLELCSLVQ  588 (660)
Q Consensus       513 GR~-~d~i~~~~G~~v~~~~iE~~l~~~p~V~~~~V~~~~~~---~~~~a~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~  588 (660)
                      ||+ ||+||+ +|++|+|.+||++|.+||+|.+|+|++.+++   +.++|+|++.++..         ..      .   
T Consensus       402 GR~~d~~ik~-~G~~v~~~eIE~~l~~~p~V~~a~Vv~~~~~~~g~~l~a~vv~~~~~~---------~~------~---  462 (505)
T 3nyq_A          402 GRKATDLIKS-GGYKIGAGEIENALLEHPEVREAAVTGEPDPDLGERIVAWIVPADPAA---------PP------A---  462 (505)
T ss_dssp             EESSCCCEEE-TTEEECHHHHHHHHTTSTTEEEEEEEEEEETTTEEEEEEEEEESSTTS---------CC------C---
T ss_pred             CCccCceEEe-CCEEECHHHHHHHHHHCcCccEEEEEeeECCCCCcEEEEEEEECCCCC---------CC------C---
Confidence            998 599997 8999999999999999999999999987654   48999999876320         00      1   


Q ss_pred             HHHHHHHHHHHHHHhCCCCCceeeeEEEEecCCCCCCCCccccccccchHHHHH
Q 006111          589 LQNYILSELKNAAERNKLRGFEHIKGVILDPRPFDMERDLVTATLKKKRNKLLI  642 (660)
Q Consensus       589 ~~~~~~~~l~~~~~~~~l~~~~~p~~i~~~~~~~~~~~~P~t~~GKv~R~~l~~  642 (660)
                           .++|+++++ .+||.|++|+.|+++      +.+|+|++||++|++|++
T Consensus       463 -----~~~l~~~l~-~~L~~~~~P~~i~~v------~~lP~t~~GKi~r~~L~~  504 (505)
T 3nyq_A          463 -----LGTLADHVA-ARLAPHKRPRVVRYL------DAVPRNDMGKIMKRALNR  504 (505)
T ss_dssp             -----HHHHHHHHH-HHTCGGGSCSEEEEC------SCCCC-------------
T ss_pred             -----HHHHHHHHH-hhCCCCcCccEEEEE------CCCCCCCCcCeeHHhhcc
Confidence                 123444444 679999999999987      446999999999999986

>3kxw_A Saframycin MX1 synthetase B; fatty acid AMP ligase, SGX, acyl adenylate, structural genom 2, protein structure initiative; HET: 1ZZ; 1.85A {Legionella pneumophila subsp} PDB: 3lnv_A*

Probab=100.00  E-value=9.8e-69  Score=598.47  Aligned_cols=504  Identities=17%  Similarity=0.194  Sum_probs=395.4

Q ss_pred             CCCCcHHHHHHHHHHhCCCCCceeeeccccCCCCCceEEeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEeCCchhHHHHH
Q 006111           39 SDLNTAWDIFSMSVQKYPGNRMLGWRPFVDGKFGPYVWKTYKEVYEEVLQIVSALRASGAEPGCRVGIYGANCPQWVEAM  118 (660)
Q Consensus        39 ~~~~ti~~~l~~~a~~~pd~~a~~~~~~~d~~~~~~~~~Ty~ql~~~v~~lA~~L~~~Gl~~gd~V~l~~~n~~e~~~~~  118 (660)
                      .+..|+.++|+++|+++||++|+++.   ++  +..+++||+||.++++++|++|++.|+++||+|+++++|++++++++
T Consensus         8 ~~~~tl~~~l~~~a~~~p~~~a~~~~---~~--~~~~~~Ty~eL~~~~~~lA~~L~~~gv~~gd~V~i~~~~~~~~~~~~   82 (590)
T 3kxw_A            8 LQCQSLVDVVRLRALHSPNKKSCTFL---NK--ELEETMTYEQLDQHAKAIAATLQAEGAKPGDRVLLLFAPGLPLIQAF   82 (590)
T ss_dssp             HTCSSHHHHHHHHHHHCTTSEEEEEE---ET--TEEEEEEHHHHHHHHHHHHHHHHHTTCCTTCEEEEECCSSHHHHHHH
T ss_pred             cCcccHHHHHHHHHHhCCCCeEEEEE---cC--CeeEEEcHHHHHHHHHHHHHHHHHcCCCCCCEEEEEcCCchhHHHHH
Confidence            35689999999999999999999986   42  23378999999999999999999999999999999999999999999


Q ss_pred             HHHHhCCCeEEecCCCCC---hhHHHHHHhcccceEEEEccchhhhhhccccccccCccEEEEecCCcHHHHHHHhhCCc
Q 006111          119 EACNALSLICVPLYDTLG---PGAVNFILDHAEIDFVFVQDKKVKELLSPDCRSAQRLRVMVCFTSLTAEQKEMAVQTGI  195 (660)
Q Consensus       119 lA~~~~G~~~vpl~~~~~---~~~l~~~l~~~~~~~ii~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~  195 (660)
                      |||+++|++++|++|.++   .+++..+++.+++++++++......+.............+..+                
T Consensus        83 lA~~~~G~~~vpl~~~~~~~~~~~~~~~l~~~~~~~vi~~~~~~~~~~~~~~~~~~~~~~~~~~----------------  146 (590)
T 3kxw_A           83 LGCLYAGCIAVPIYPPAQEKLLDKAQRIVTNSKPVIVLMIADHIKKFTADELNTNPKFLKIPAI----------------  146 (590)
T ss_dssp             HHHHHTTCEEEEECCCCSHHHHHHHHHHHHHHCCSEEEECHHHHHHHCC-----CCEETTEEEE----------------
T ss_pred             HHHHHhCcEEEEecCCCchHHHHHHHHHHHhCCCCEEEeCHHHHHHHHHhhhhhccccccccee----------------
Confidence            999999999999999884   5789999999999999999887665543221111111111111                


Q ss_pred             ceeeHHHHHhcCccCCccCCCCCCCceEEEEecCCCCCCCceeeecchhHHHHhhhhhhhcccccCCCCCCcEEEEecCh
Q 006111          196 KPYSWDEFLHLGKVNEMEILPPQPFNICTIMYTSGTSGDPKGVVLTHETIATFVSGVDLFLDQFEDKMTVDDVYLSFLPL  275 (660)
Q Consensus       196 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~TSGTTG~pK~v~~th~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~pl  275 (660)
                         ....+... ...........++++++|+|||||||.||+|++||+++++.+......+     ++..++++++++|+
T Consensus       147 ---~~~~~~~~-~~~~~~~~~~~~~d~a~i~~TSGTTG~PKgV~~th~~l~~~~~~~~~~~-----~~~~~d~~l~~~p~  217 (590)
T 3kxw_A          147 ---ALESIELN-RSSSWQPTSIKSNDIAFLQYTSGSTMHPKGVMVSHHNLLDNLNKIFTSF-----HMNDETIIFSWLPP  217 (590)
T ss_dssp             ---EGGGCCGG-GGGGCCCCCCCTTSEEEEEECSSCSSSCCEEEEEHHHHHHHHHHHHHHT-----TCCTTCEEEECSCT
T ss_pred             ---echhcccc-ccccCCCCCCCCCCeEEEEeCcCCCCCceEEEeeHHHHHHHHHHHHHhh-----CCCCcCeEEEecCC
Confidence               11111110 0112233456789999999999999999999999999999999887777     88999999999999


Q ss_pred             hHHHHHHH-HHHHhhcCcEEEEecC-----ChhhHHHHhhhhcCeEEEechHHHHHHHHHHHHHHHhhchHHHHHHHHHH
Q 006111          276 AHILDRVI-EEYFFRRGASVGYYHG-----DLNALRDDLMELKPTLLAGVPRVFEKIHEGIKKALEELRPLRRRIFDALY  349 (660)
Q Consensus       276 ~~~~g~~~-~l~~l~~G~~~v~~~~-----~~~~~~~~i~~~~~t~~~~~p~~~~~l~~~~~~~~~~~~~~~~~~~~~~~  349 (660)
                      +|.+|+.. ++.+++.|+++++.+.     ++..+++.|+++++|++.++|.++..+.+.....                
T Consensus       218 ~h~~g~~~~~~~~l~~G~~~v~~~~~~~~~~~~~~~~~i~~~~~t~~~~~p~~~~~l~~~~~~~----------------  281 (590)
T 3kxw_A          218 HHDMGLIGCILTPIYGGIQAIMMSPFSFLQNPLSWLKHITKYKATISGSPNFAYDYCVKRIREE----------------  281 (590)
T ss_dssp             TSHHHHHTTTHHHHHHTCEEEECCHHHHHHCTHHHHHHHHHHTCSEEEECTHHHHHHHHHCCGG----------------
T ss_pred             CcchhhHHHHHHHHhcCceEEEeCHHHHHHCHHHHHHHHHHhCCeeecCChhHHHHHHHHhhhh----------------
Confidence            99999987 7788999999998864     7899999999999999999999999886532111                


Q ss_pred             HHHHHHHhhCCCCCCcchhhhHHHHHHHHHHhCCcEeEEEEccCCCCHHHHHHHHHhcC------CceeeecCCCCCCCc
Q 006111          350 KYKLAWMNMGYKQREASPLADLLAFRKVKARLGGRLRLVISGGAPLSTEVEEFLRVTCC------AFLVQGYGLTETCGP  423 (660)
Q Consensus       350 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lr~i~~~G~~l~~~~~~~~~~~~~------~~v~~~YG~tE~~~~  423 (660)
                                        .....+        ++++|.+++||+++++++.+.+.+.++      ..+++.||+||++++
T Consensus       282 ------------------~~~~~~--------l~~lr~~~~gg~~l~~~~~~~~~~~~~~~g~~~~~~~~~YG~TE~~~~  335 (590)
T 3kxw_A          282 ------------------KKEGLD--------LSSWVTAFNGAEPVREETMEHFYQAFKEFGFRKEAFYPCYGLAEATLL  335 (590)
T ss_dssp             ------------------GGTTCC--------CTTCCEEEECSSCCCHHHHHHHHHHHGGGTCCGGGEEEEEECGGGSSE
T ss_pred             ------------------hccCCC--------chhhHHHhhCCCCCCHHHHHHHHHHHHHcCCCccccccccccccccce
Confidence                              011111        258999999999999999999998873      479999999999988


Q ss_pred             eecccCC--------------------------CccccCccCCCccCeeEEeeecCCCCCCCCCCCCCceEEEccCCccc
Q 006111          424 TTVCFPD--------------------------EMCMVGTAGPVSVYSELRLEEVPEMGYSPLDDPPCGEVCVRGKTLFS  477 (660)
Q Consensus       424 ~~~~~~~--------------------------~~~~~~~~G~~~~~~~v~ivd~~~~~~~~~~~~~~Gei~v~g~~~~~  477 (660)
                      ++.....                          ......++|.|+++  ++|+| ++++ .+++.|+.|||+|+||+++.
T Consensus       336 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~p~~~--v~i~d-~~~~-~~~~~g~~GEl~v~g~~v~~  411 (590)
T 3kxw_A          336 VTGGTPGSSYKTLTLAKEQFQDHRVHFADDNSPGSYKLVSSGNPIQE--VKIID-PDTL-IPCDFDQVGEIWVQSNSVAK  411 (590)
T ss_dssp             EEECCTTSCCCEEEECSCCCSSSBCCBCCTTCTTCEEEECCCEESSE--EEEEC-TTTC-CBCCTTBCEEEEEESTTSCC
T ss_pred             eecccCCCCceeeeecHHHHhcCceeeccCCCCCcceEeccCCCCCC--eEEEc-CCCC-cCCCCCCEEEEEEeCCcccc
Confidence            7754321                          12234688999988  88888 5533 45566789999999999999


Q ss_pred             ccCCCchhhhhcccC-------C--ccccCceEEECCCCcEEEEeccCCeeEcCCCeeecchhHHHHH-hcCcCcc--eE
Q 006111          478 GYYKNPDLTRESIID-------G--WFHTGDIGQILPNGVVKIIDRKKNLIKISQGEYVALEYLENVY-CVAPIIE--DI  545 (660)
Q Consensus       478 gy~~~~~~~~~~~~~-------g--~~~TGDl~~~~~~G~l~~~GR~~d~i~~~~G~~v~~~~iE~~l-~~~p~V~--~~  545 (660)
                      ||+++++.+.+.|.+       |  ||+|||+|++| +|.|+++||.||+||+ +|++|+|.+||++| ..||.|.  +|
T Consensus       412 GY~~~p~~t~~~f~~~~~~~~~g~~~~~TGDlg~~d-dG~l~~~GR~dd~Ik~-~G~~v~p~eIE~~l~~~~~~v~~~~~  489 (590)
T 3kxw_A          412 GYWNQPEETRHAFAGKIKDDERSAIYLRTGDLGFLH-ENELYVTGRIKDLIII-YGKNHYPQDIEFSLMHSPLHHVLGKC  489 (590)
T ss_dssp             CBTTCHHHHHHHHCBCCTTC---CCBEEEEEEEEEE-TTEEEEEEESSCHHHH-HHHTTHHHHHHHHHHHSGGGGGEEEE
T ss_pred             cccCChhHHHHHHhccccCCCCCCcEEecCcEEEEE-CCEEEEEcCccceEEE-CCEecCHHHHHHHHHhcCccccCccE
Confidence            999999999999843       5  99999999999 9999999999999998 89999999999999 8899998  79


Q ss_pred             EEEecCCC--CeEEEEEEcChhhHHHHHHHCCCCCcHHHHhccHHHHHHHHHHHHHHHHhCCCCCceeee-EEEEecCCC
Q 006111          546 WVYGDSLK--SMLVAVVVPCEEDTKKWAYSNGHAGSFLELCSLVQLQNYILSELKNAAERNKLRGFEHIK-GVILDPRPF  622 (660)
Q Consensus       546 ~V~~~~~~--~~~~a~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~l~~~~~p~-~i~~~~~~~  622 (660)
                      +|++.+++  +.+++++++.++..          .+    ....++.+++++.|.+        .|++|. .+.+++   
T Consensus       490 ~v~~~~~~~~~~~~~~v~~~~~~~----------~~----~~~~~l~~~l~~~l~~--------~~~~p~~~i~~v~---  544 (590)
T 3kxw_A          490 AAFVIQEEHEYKLTVMCEVKNRFM----------DD----VAQDNLFNEIFELVYE--------NHQLEVHTIVLIP---  544 (590)
T ss_dssp             EEEEEEETTEEEEEEEEEESCTTC----------CH----HHHHHHHHHHHHHHHH--------HHSCCCCEEEEEE---
T ss_pred             EEEEecCCCCceEEEEEEeccccc----------cc----hhHHHHHHHHHHHHHH--------HcCCceeEEEEEC---
Confidence            98886543  47888888776420          00    0122333444433322        144443 455553   


Q ss_pred             CCCCCccccccccchHHHHHHHHH
Q 006111          623 DMERDLVTATLKKKRNKLLIYYQV  646 (660)
Q Consensus       623 ~~~~~P~t~~GKv~R~~l~~~~~~  646 (660)
                       ++.+|+|++||++|++|+++|.+
T Consensus       545 -~~~lP~t~sGKi~R~~L~~~~~~  567 (590)
T 3kxw_A          545 -LKAMPHTTSGKIRRNFCRKHLLD  567 (590)
T ss_dssp             -TTCSCCCSCHHHHHHHHHHHHHH
T ss_pred             -CCccCcCCCcHHHHHHHHHHHHc
Confidence             35679999999999999999965

>3ite_A SIDN siderophore synthetase; ligase, non-ribosomal peptide synthesis, NRPS, sidna3, fungal, endophyte; HET: MSE; 2.00A {Neotyphodium lolii}

Probab=100.00  E-value=1.6e-69  Score=600.57  Aligned_cols=522  Identities=16%  Similarity=0.133  Sum_probs=319.2

Q ss_pred             CCCCCCCcHHHHHHHHHHhCCCCCceeeeccccC----CCCCceEEeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEeCCc
Q 006111           36 SVDSDLNTAWDIFSMSVQKYPGNRMLGWRPFVDG----KFGPYVWKTYKEVYEEVLQIVSALRASGAEPGCRVGIYGANC  111 (660)
Q Consensus        36 ~~~~~~~ti~~~l~~~a~~~pd~~a~~~~~~~d~----~~~~~~~~Ty~ql~~~v~~lA~~L~~~Gl~~gd~V~l~~~n~  111 (660)
                      ....+..|+.++|+++|+++||++|+++.   ++    .....+++||+||.++++++|+.|.+.|+ +||+|+++++|+
T Consensus        14 ~~~~~~~tl~~~l~~~a~~~p~~~A~~~~---~~~~~~~~~~~~~~Ty~eL~~~~~~lA~~L~~~g~-~gd~V~i~~~n~   89 (562)
T 3ite_A           14 AQYTSTVPPSHYIETWAKTHPEWKAVEVA---TGFLGSQKIVTEDWTYKKLNETANQVANLIIHASL-HGRAIAVSLDRS   89 (562)
T ss_dssp             ----CCCCTTHHHHHHHHHCTTSEEEEEE---ECC-----CEEEEEEHHHHHHHHHHHHHHHHHTTC-SSCEEEEECCSC
T ss_pred             eeecccCCHHHHHHHHHHHCCCchhhhcc---cccccccccccCCCCHHHHHHHHHHHHHHHHhcCC-CCCEEEEEeCCC
Confidence            33445678999999999999999999876   32    12234789999999999999999999999 799999999999


Q ss_pred             hhHHHHHHHHHhCCCeEEecCCCCChhHHHHHHhcccceEEEEccchhhhhhccccccccCccEEEEecCCcHHHHHHHh
Q 006111          112 PQWVEAMEACNALSLICVPLYDTLGPGAVNFILDHAEIDFVFVQDKKVKELLSPDCRSAQRLRVMVCFTSLTAEQKEMAV  191 (660)
Q Consensus       112 ~e~~~~~lA~~~~G~~~vpl~~~~~~~~l~~~l~~~~~~~ii~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~  191 (660)
                      +++++++|||+++|++++|+++.++.+++.+++++++++++|+++.......      ......++.....         
T Consensus        90 ~~~~~~~lA~~~~Gav~vpl~~~~~~~~l~~~l~~~~~~~~i~~~~~~~~~~------~~~~~~~~~~~~~---------  154 (562)
T 3ite_A           90 LIAFAIIVGIMKSGNTYVPIEAGLPNDRKSFLLRDSRAAMAFVCDNNFDGVE------LPPETKVLDTKNQ---------  154 (562)
T ss_dssp             HHHHHHHHHHHHTTCEEEECCTTSCHHHHHHHHHHHTCSEEEECTTTTTTCC------CCTTCEEEETTCH---------
T ss_pred             HHHHHHHHHHHHhCCEEEecCCcCHHHHHHHHHHhcCCCEEEEccccccccc------cCccceeecccch---------
Confidence            9999999999999999999999999999999999999999999876544321      1111122222111         


Q ss_pred             hCCcceeeHHHHHhcCccCCccCCCCCCCceEEEEecCCCCCCCceeeecchhHHHHhhhhhhhccc---ccCCCCCCcE
Q 006111          192 QTGIKPYSWDEFLHLGKVNEMEILPPQPFNICTIMYTSGTSGDPKGVVLTHETIATFVSGVDLFLDQ---FEDKMTVDDV  268 (660)
Q Consensus       192 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~TSGTTG~pK~v~~th~~l~~~~~~~~~~~~~---~~~~~~~~~~  268 (660)
                             .+.+..... ..........++++++|+|||||||.||+|++||+++.+.+..+...+..   ....+...++
T Consensus       155 -------~~~~~~~~~-~~~~~~~~~~~~~~a~i~~TSGTTG~PKgV~~th~~l~~~~~~~~~~~~~~~~~~~~~~~~~~  226 (562)
T 3ite_A          155 -------SFIENLSTQ-DTSDILNNYPENLDAYLLYTSGSTGTPKGVRVSRHNLSSFSDAWGKLIGNVAPKSLELGGVGK  226 (562)
T ss_dssp             -------HHHHHHHHS-CCSCCCCCCCTTSEEEEEEECC---CCEEEEEEHHHHHHHHHHHHHHHHHHCGGGGGCTTTCE
T ss_pred             -------hhhhhcccc-cccccccCCCCCCcEEEEECCCCCCCCcEEEECchhHHHHHHHHHhhhccccchhcccCcCce
Confidence                   122222221 11222334567889999999999999999999999999887765543211   1124678899


Q ss_pred             EEEecChhHHHHHHHHHHHhhcCcEEEEecC--ChhhHHHHhhhhcCeEEEechHHHHHHHHHHHHHHHhhchHHHHHHH
Q 006111          269 YLSFLPLAHILDRVIEEYFFRRGASVGYYHG--DLNALRDDLMELKPTLLAGVPRVFEKIHEGIKKALEELRPLRRRIFD  346 (660)
Q Consensus       269 ~l~~~pl~~~~g~~~~l~~l~~G~~~v~~~~--~~~~~~~~i~~~~~t~~~~~p~~~~~l~~~~~~~~~~~~~~~~~~~~  346 (660)
                      +++..|+.|..++...+.++..|+++++.+.  .+..+++.++++++|+++++|++++.+...                 
T Consensus       227 ~~~~~~~~~~~~~~~~~~~l~~g~~~~~~~~~~~~~~~~~~i~~~~~t~~~~~P~~l~~~~~~-----------------  289 (562)
T 3ite_A          227 FLCLASRAFDVHIGEMFLAWRFGLCAVTGERLSMLDDLPRTFRELGVTHAGIVPSLLDQTGLV-----------------  289 (562)
T ss_dssp             EECCSCTTSTHHHHHHHHHHHTTCEEEECCHHHHHHSHHHHHHHTTCCEEEECHHHHHHHTCC-----------------
T ss_pred             EEEecCchhhhhHHHHHHHHhcccEEEecchhhCHHHHHHHHHHcCCCEEEcCHHHHhhcccC-----------------
Confidence            9999999998888778888999999988764  467889999999999999999987764210                 


Q ss_pred             HHHHHHHHHHhhCCCCCCcchhhhHHHHHHHHHHhCCcEeEEEEccCCCCHHHHHHHHHhcCCceeeecCCCCCCCceec
Q 006111          347 ALYKYKLAWMNMGYKQREASPLADLLAFRKVKARLGGRLRLVISGGAPLSTEVEEFLRVTCCAFLVQGYGLTETCGPTTV  426 (660)
Q Consensus       347 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lr~i~~~G~~l~~~~~~~~~~~~~~~v~~~YG~tE~~~~~~~  426 (660)
                                          +    .        ..++||.+++||+++++++.+.+.+.+++.+++.||+||++..++.
T Consensus       290 --------------------~----~--------~~~~lr~~~~gG~~l~~~~~~~~~~~~~~~~~~~YG~TE~~~~~~~  337 (562)
T 3ite_A          290 --------------------P----E--------DAPHLVYLGVGGEKMTPRTQQIWSSSDRVALVNVYGPTEVTIGCSA  337 (562)
T ss_dssp             --------------------G----G--------GSTTCCEEEEESSCCCHHHHHHHTTCSSCEEEEEECCGGGCSCSEE
T ss_pred             --------------------c----c--------ccCceEEEEEecCCCCHHHHHHHhhCCCcEEEEeeccchheeeeee
Confidence                                0    0        1148999999999999999999998889999999999999987776


Q ss_pred             ccCCCccccCccCCCccCeeEEeeecCCCCCCCCCCCCCceEEEccCCcccccCCCchhhhhcccCC--ccccCceEEEC
Q 006111          427 CFPDEMCMVGTAGPVSVYSELRLEEVPEMGYSPLDDPPCGEVCVRGKTLFSGYYKNPDLTRESIIDG--WFHTGDIGQIL  504 (660)
Q Consensus       427 ~~~~~~~~~~~~G~~~~~~~v~ivd~~~~~~~~~~~~~~Gei~v~g~~~~~gy~~~~~~~~~~~~~g--~~~TGDl~~~~  504 (660)
                      .........+++|.|+++++++++| ++++ .+++.|+.|||+|+||+++.||+++++.+...+.+|  ||+|||+|++|
T Consensus       338 ~~~~~~~~~~~~G~p~~~~~~~i~d-~~~~-~~~~~g~~GEl~v~g~~v~~GY~~~p~~t~~~~~~g~~w~~TGDlg~~d  415 (562)
T 3ite_A          338 GRILPDSDTRCIGHPLGDSVAHVLA-PGSN-EHVKKGMAGELVIEGSLVANGYLNRPDAKGFCDINGRKMYRTGDIVRMD  415 (562)
T ss_dssp             EECCTTSCTTEEEEECTTCEEEEEC-TTSS-CBCCTTSCEEEEEESTTSCCEESSCTTCCSEEEETTEEEEEEEEEEEEC
T ss_pred             eeecCCCCCccccccCCCCeEEEEe-CCCC-CCCCCCCceEEEEeccccchhhCCCccccccccCCCCEEEecCCEEEEc
Confidence            6655444557899999999999999 5444 345667899999999999999999999888777777  99999999999


Q ss_pred             CCCcEEEEeccCCeeEcCCCeeecchhHHHHHhcC-cCcceEEEEecCCCC---eEEEEEEcChhhHHHHHHHCCCCCcH
Q 006111          505 PNGVVKIIDRKKNLIKISQGEYVALEYLENVYCVA-PIIEDIWVYGDSLKS---MLVAVVVPCEEDTKKWAYSNGHAGSF  580 (660)
Q Consensus       505 ~~G~l~~~GR~~d~i~~~~G~~v~~~~iE~~l~~~-p~V~~~~V~~~~~~~---~~~a~v~~~~~~~~~~~~~~~~~~~~  580 (660)
                      +||+|+++||.||+||+ +|++|+|.|||++|.+| |.+.+|+|++.+++.   ..++.++...+...        ..++
T Consensus       416 ~dG~l~~~GR~dd~Ik~-~G~~v~p~eIE~~l~~~~~~~~~~~v~~~~~~~~~~~~~~~~v~~~~~~~--------~~~~  486 (562)
T 3ite_A          416 ADSSILFLGRKDEQVKV-RGQRLELGEVSEVIRSLSPTDIDVVTLLLNHPGTSKQFLVSFVASSGAAV--------RGEL  486 (562)
T ss_dssp             TTSCEEEEEEC---------------------------------------------------------------------
T ss_pred             CCCeEEEEccccCEEeE-CcEEECHHHHHHHHHhcCCCceeEEEEEecCCCCcceEEEEEEecccccc--------cccc
Confidence            99999999999999997 89999999999999988 888899988866542   33333333332210        0000


Q ss_pred             HHHhccHHHHHHHHHHHHHHHHhCCCCCceeeeEEEEecCCCCCCCCccc-cccccchHHHHHHHHHH-HHHHHhh
Q 006111          581 LELCSLVQLQNYILSELKNAAERNKLRGFEHIKGVILDPRPFDMERDLVT-ATLKKKRNKLLIYYQVE-IDQLYEK  654 (660)
Q Consensus       581 ~~~~~~~~~~~~~~~~l~~~~~~~~l~~~~~p~~i~~~~~~~~~~~~P~t-~~GKv~R~~l~~~~~~~-i~~~y~~  654 (660)
                      ..   ..+-...+.++|+++++ .+||.|++|+.|++++      .+|+| ++||++|++|+++|++. ..+++..
T Consensus       487 ~~---~~~~~~~~~~~l~~~~~-~~L~~y~~P~~i~~v~------~lP~t~~~GKi~r~~L~~~~~~~~~~~~~~~  552 (562)
T 3ite_A          487 RW---INENYKEINNSLRQACE-QTLPAYMVPDFIIPIS------FIPLRDTSAKTDAKALEHMFHTLSLGELFGE  552 (562)
T ss_dssp             ----------------------------------------------------------------------------
T ss_pred             cc---cccchhhHHHHHHHHHH-hhCCcccCCcEEEEec------cCCCCCCCCcchHHHHHHHHhccCHHHHhcc
Confidence            00   00112233456777776 7899999999999874      45888 89999999999999763 3455543

>2vsq_A Surfactin synthetase subunit 3; ligase, peptidyl carrier protein, ligase phosphoprotein, TER module, phosphopantetheine; 2.60A {Bacillus subtilis}

Probab=100.00  E-value=1.8e-66  Score=625.93  Aligned_cols=480  Identities=20%  Similarity=0.230  Sum_probs=397.2

Q ss_pred             CCCCCcHHHHHHHHHHhCCCCCceeeeccccCCCCCceEEeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEeCCchhHHHH
Q 006111           38 DSDLNTAWDIFSMSVQKYPGNRMLGWRPFVDGKFGPYVWKTYKEVYEEVLQIVSALRASGAEPGCRVGIYGANCPQWVEA  117 (660)
Q Consensus        38 ~~~~~ti~~~l~~~a~~~pd~~a~~~~~~~d~~~~~~~~~Ty~ql~~~v~~lA~~L~~~Gl~~gd~V~l~~~n~~e~~~~  117 (660)
                      +....++.++|+++++++||++|+++.   +      +++||+||.++++++|++|++.|+++|++|+|+++|+++++++
T Consensus       460 ~~~~~~l~~~~~~~~~~~p~~~Av~~~---~------~~lTY~eL~~~a~~lA~~L~~~Gv~~g~~V~i~~~~s~~~vv~  530 (1304)
T 2vsq_A          460 AHETKPLTYWFKEAVNANPDAPALTYS---G------QTLSYRELDEEANRIARRLQKHGAGKGSVVALYTKRSLELVIG  530 (1304)
T ss_dssp             CCCCCCHHHHHHHHHHHCTTSEEEESS---S------CEEEHHHHHHHHHHHHHHHHHTTCCTTCEEEECCCSSHHHHHH
T ss_pred             CCCCCCHHHHHHHHHHhCCCCeEEEEC---C------eeEcHHHHHHHHHHHHHHHHhcCcCCcCEEEEEeCCCHHHHHH
Confidence            333479999999999999999999876   4      4899999999999999999999999999999999999999999


Q ss_pred             HHHHHhCCCeEEecCCCCChhHHHHHHhcccceEEEEccchhhhhhccccccccCccEEEEecCCcHHHHHHHhhCCcce
Q 006111          118 MEACNALSLICVPLYDTLGPGAVNFILDHAEIDFVFVQDKKVKELLSPDCRSAQRLRVMVCFTSLTAEQKEMAVQTGIKP  197 (660)
Q Consensus       118 ~lA~~~~G~~~vpl~~~~~~~~l~~~l~~~~~~~ii~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~  197 (660)
                      +|||+++|++++|++|.++.+++..+++++++++++++......+..     .+.....+.+++...             
T Consensus       531 ~lailkaG~~~vpldp~~p~~rl~~il~~~~~~~vl~~~~~~~~~~~-----~~~~~~~~~~~~~~~-------------  592 (1304)
T 2vsq_A          531 ILGVLKAGAAYLPVDPKLPEDRISYMLADSAAACLLTHQEMKEQAAE-----LPYTGTTLFIDDQTR-------------  592 (1304)
T ss_dssp             HHHHHHTTCEEEECCTTSCHHHHHHHHHHHTCCEEEECSTTCTTSTT-----CCCCSEEEESSCGGG-------------
T ss_pred             HHHHHHHCCEEEEECCCCHHHHHHHHHHHcCCCEEEECcchhhhhhc-----cCCCCcEEEeccccc-------------
Confidence            99999999999999999999999999999999999998765443211     111123333332110             


Q ss_pred             eeHHHHHhcCccCCccCCCCCCCceEEEEecCCCCCCCceeeecchhHHHHhhhhhhhcccccCCCCCCcEEEEecChhH
Q 006111          198 YSWDEFLHLGKVNEMEILPPQPFNICTIMYTSGTSGDPKGVVLTHETIATFVSGVDLFLDQFEDKMTVDDVYLSFLPLAH  277 (660)
Q Consensus       198 ~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~TSGTTG~pK~v~~th~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~pl~~  277 (660)
                           +   ......+.....+++++||+|||||||.||||+++|+++.+.. .....+     ++..+++++.+.|++|
T Consensus       593 -----~---~~~~~~~~~~~~~~~~ayiiyTSGSTG~PKgV~~~h~~l~~~~-~~~~~~-----~~~~~d~~l~~~~~~f  658 (1304)
T 2vsq_A          593 -----F---EEQASDPATAIDPNDPAYIMYTSGTTGKPKGNITTHANIQGLV-KHVDYM-----AFSDQDTFLSVSNYAF  658 (1304)
T ss_dssp             -----G---GSCSSCCCCCCCTTSEEEEEEECCSSSSCEEEEEEHHHHHHHH-SSCCSS-----CCCTTCEEEECSCTTS
T ss_pred             -----c---ccccCCCCCCCCCCCeEEEEeCCCCCCCCCEEEEehHHHHHHH-HHHHhc-----CCCCCCEEEEECCccH
Confidence                 0   0011122334578999999999999999999999999998763 333333     7889999999999999


Q ss_pred             HHHHHHHHHHhhcCcEEEEecC----ChhhHHHHhhhhcCeEEEechHHHHHHHHHHHHHHHhhchHHHHHHHHHHHHHH
Q 006111          278 ILDRVIEEYFFRRGASVGYYHG----DLNALRDDLMELKPTLLAGVPRVFEKIHEGIKKALEELRPLRRRIFDALYKYKL  353 (660)
Q Consensus       278 ~~g~~~~l~~l~~G~~~v~~~~----~~~~~~~~i~~~~~t~~~~~p~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~  353 (660)
                      ..+...++.++..|+++++.+.    ++..+.+.|.++++|+++++|+++..+.+....                     
T Consensus       659 d~~~~~~~~~l~~G~~l~~~~~~~~~~~~~l~~~i~~~~vt~~~~~p~~~~~l~~~~~~---------------------  717 (1304)
T 2vsq_A          659 DAFTFDFYASMLNAARLIIADEHTLLDTERLTDLILQENVNVMFATTALFNLLTDAGED---------------------  717 (1304)
T ss_dssp             THHHHHHHHHHTTTCEEEECCGGGTTCHHHHHHHHHHHTCCEEEEEHHHHHHHHHHCSH---------------------
T ss_pred             HHHHHHHHHHHHcCCEEEECChhhcCCHHHHHHHHHHcCCcEEEccHHHHHHHHhhchh---------------------
Confidence            8888778899999999999874    889999999999999999999999988642100                     


Q ss_pred             HHHhhCCCCCCcchhhhHHHHHHHHHHhCCcEeEEEEccCCCCHHHHHHHHHhcC-CceeeecCCCCCCCceecccCCC-
Q 006111          354 AWMNMGYKQREASPLADLLAFRKVKARLGGRLRLVISGGAPLSTEVEEFLRVTCC-AFLVQGYGLTETCGPTTVCFPDE-  431 (660)
Q Consensus       354 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lr~i~~~G~~l~~~~~~~~~~~~~-~~v~~~YG~tE~~~~~~~~~~~~-  431 (660)
                                         .+        ++||.+++|||++++++.+.+.+.++ +.++|+||+||++++++...... 
T Consensus       718 -------------------~~--------~~lr~~~~gGe~l~~~~~~~~~~~~~~~~l~n~YG~TE~~~~~~~~~~~~~  770 (1304)
T 2vsq_A          718 -------------------WM--------KGLRCILFGGERASVPHVRKALRIMGPGKLINCYGPTEGTVFATAHVVHDL  770 (1304)
T ss_dssp             -------------------HH--------HTCSEEEEESSCCCHHHHHHHHHHHCTTCEEEEECCGGGSSCSEEEECCCC
T ss_pred             -------------------cC--------CCccEEEEecCCCCHHHHHHHHHhCCCCEEEEeEChhHHhHHheeeeccCc
Confidence                               01        28999999999999999999888774 78999999999998877654322 


Q ss_pred             --ccccCccCCCccCeeEEeeecCCCCCCCCCCCCCceEEEccCCcccccCCCchhhhhccc-------CCccccCceEE
Q 006111          432 --MCMVGTAGPVSVYSELRLEEVPEMGYSPLDDPPCGEVCVRGKTLFSGYYKNPDLTRESII-------DGWFHTGDIGQ  502 (660)
Q Consensus       432 --~~~~~~~G~~~~~~~v~ivd~~~~~~~~~~~~~~Gei~v~g~~~~~gy~~~~~~~~~~~~-------~g~~~TGDl~~  502 (660)
                        .....++|+|+++++++|+| +++..  ++.|+.|||||+|+++++||+++++.|.++|.       ++||+|||+|+
T Consensus       771 ~~~~~~~~iG~p~~~~~~~i~d-~~~~~--~p~G~~GEl~i~G~~v~~GY~~~p~~T~~~f~~~p~~~g~~~yrTGDl~~  847 (1304)
T 2vsq_A          771 PDSISSLPIGKPISNASVYILN-EQSQL--QPFGAVGELCISGMGVSKGYVNRADLTKEKFIENPFKPGETLYRTGDLAR  847 (1304)
T ss_dssp             CSSCSSCCCBEECTTEEEEEEC-TTSCB--CCTTCCEEEEEEETTCCCCBTTCHHHHHHHEEECTTSTTCEEEEEEEEEE
T ss_pred             cccCCCCCCceeeCCCEEEEEC-CCcCC--CCCCCceEEEEeccccCccccCCcccchhhhccCCCCCCCeeEecCCeEE
Confidence              22336899999999999999 76654  44568999999999999999999999999982       34999999999


Q ss_pred             ECCCCcEEEEeccCCeeEcCCCeeecchhHHHHHhcCcCcceEEEEecCCC---CeEEEEEEcChhhHHHHHHHCCCCCc
Q 006111          503 ILPNGVVKIIDRKKNLIKISQGEYVALEYLENVYCVAPIIEDIWVYGDSLK---SMLVAVVVPCEEDTKKWAYSNGHAGS  579 (660)
Q Consensus       503 ~~~~G~l~~~GR~~d~i~~~~G~~v~~~~iE~~l~~~p~V~~~~V~~~~~~---~~~~a~v~~~~~~~~~~~~~~~~~~~  579 (660)
                      +++||.|+++||.||+||+ +|++|+|.|||++|.+||+|.+|+|++.++.   ..++|+|+.....             
T Consensus       848 ~~~dG~l~~~GR~d~qvki-~G~rie~~eIE~~l~~~p~V~~a~V~~~~~~~~~~~l~a~vv~~~~~-------------  913 (1304)
T 2vsq_A          848 WLPDGTIEYAGRIDDQVKI-RGHRIELEEIEKQLQEYPGVKDAVVVADRHESGDASINAYLVNRTQL-------------  913 (1304)
T ss_dssp             ECTTSCEEEEEEGGGEEEE-TTEEEEHHHHHHHHHHSSSCCEEEEEEECCSSSCCEEEEEEECSSSS-------------
T ss_pred             EcCCCeEEEEcCCCCEEEE-CCEeeCHHHHHHHHHhCCCCceEEEEEEecCCCCEEEEEEEeCCCCC-------------
Confidence            9999999999999999998 7999999999999999999999999986543   4899999876531             


Q ss_pred             HHHHhccHHHHHHHHHHHHHHHHhCCCCCceeeeEEEEecCCCCCCCCccccccccchHHHHHH
Q 006111          580 FLELCSLVQLQNYILSELKNAAERNKLRGFEHIKGVILDPRPFDMERDLVTATLKKKRNKLLIY  643 (660)
Q Consensus       580 ~~~~~~~~~~~~~~~~~l~~~~~~~~l~~~~~p~~i~~~~~~~~~~~~P~t~~GKv~R~~l~~~  643 (660)
                           +.        ++|+++++ ..||.|++|..+++++      .+|+|++||++|++|.+.
T Consensus       914 -----~~--------~~l~~~l~-~~Lp~ymvP~~~~~l~------~lP~t~~GKidR~~L~~~  957 (1304)
T 2vsq_A          914 -----SA--------EDVKAHLK-KQLPAYMVPQTFTFLD------ELPLTTNGKVNKRLLPKP  957 (1304)
T ss_dssp             -----CH--------HHHHHHHH-HHSCGGGSCSEEEEES------CCCCCSSCSSCCSCCCCC
T ss_pred             -----CH--------HHHHHHHH-HhChHhhhccEEEEec------ccCCCCCcccCHhhcCCc
Confidence                 11        23444443 6799999999999874      468999999999988654

>3t5a_A Long-chain-fatty-acid--AMP ligase FADD28; acetyl-COA synthetase like fold, AMP-binding; 2.05A {Mycobacterium tuberculosis} PDB: 3e53_A

Probab=100.00  E-value=1.8e-56  Score=486.86  Aligned_cols=401  Identities=16%  Similarity=0.198  Sum_probs=312.7

Q ss_pred             CCCcHHHHHHHHHHhCCCCCceeeeccccCCCCCceEEeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEeCCchhHHHHHH
Q 006111           40 DLNTAWDIFSMSVQKYPGNRMLGWRPFVDGKFGPYVWKTYKEVYEEVLQIVSALRASGAEPGCRVGIYGANCPQWVEAME  119 (660)
Q Consensus        40 ~~~ti~~~l~~~a~~~pd~~a~~~~~~~d~~~~~~~~~Ty~ql~~~v~~lA~~L~~~Gl~~gd~V~l~~~n~~e~~~~~l  119 (660)
                      ...++.++|+++++++||++|+++....++..+..+++||+||.++++++|++|++.|+ +||+|+++++|++++++++|
T Consensus        22 ~~~tl~~~l~~~a~~~pd~~Al~~~~~~~~~~g~~~~~Ty~el~~~~~~lA~~L~~~g~-~gd~V~i~~~n~~e~~~~~l  100 (480)
T 3t5a_A           22 SVRSLPAALRACARLQPHDPAFTFMDYEQDWDGVAITLTWSQLYRRTLNVAQELSRCGS-TGDRVVISAPQGLEYVVAFL  100 (480)
T ss_dssp             --CCHHHHHHHHHHHSTTSEEEEEEETTTCTTCEEEEEEHHHHHHHHHHHHHHHTTSSC-TTCEEEEECCSSHHHHHHHH
T ss_pred             CcccHHHHHHHHHHhCCCCceEEEecccCCCCCceEEEcHHHHHHHHHHHHHHHHhcCC-CCCEEEEEcCCcHHHHHHHH
Confidence            35789999999999999999999871101334455799999999999999999999996 99999999999999999999


Q ss_pred             HHHhCCCeEEecCC---CCChhHHHHHHhcccceEEEEccchhhhhhcccccccc-CccEEEEecCCcHHHHHHHhhCCc
Q 006111          120 ACNALSLICVPLYD---TLGPGAVNFILDHAEIDFVFVQDKKVKELLSPDCRSAQ-RLRVMVCFTSLTAEQKEMAVQTGI  195 (660)
Q Consensus       120 A~~~~G~~~vpl~~---~~~~~~l~~~l~~~~~~~ii~~~~~~~~~~~~~~~~~~-~~~~i~~~~~~~~~~~~~~~~~~~  195 (660)
                      ||+++|++++|+++   .++.+++..+++.++++++|++......+.+....... ....++..+...            
T Consensus       101 A~~~~G~v~vpl~~~~~~~~~~~l~~il~~~~~~~vi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------------  168 (480)
T 3t5a_A          101 GALQAGRIAVPLSVPQGGVTDERSDSVLSDSSPVAILTTSSAVDDVVQHVARRPGESPPSIIEVDLLD------------  168 (480)
T ss_dssp             HHHHTTCEEEEECSCCSCTTCCHHHHHHHHHCCSEEEECTTTHHHHHHTCC------CCEEEEGGGSC------------
T ss_pred             HHHHhCcEEEeeCCCCccchHHHHHHHHHhCCCCEEEeChhHHHHHHHHHhccccccccceeEecccc------------
Confidence            99999999999999   78899999999999999999998876655443221110 111222222110            


Q ss_pred             ceeeHHHHHhcCccCCccCCCCCCCceEEEEecCCCCCCCceeeecchhHHHHhhhhhhhcccccCCCCC------CcEE
Q 006111          196 KPYSWDEFLHLGKVNEMEILPPQPFNICTIMYTSGTSGDPKGVVLTHETIATFVSGVDLFLDQFEDKMTV------DDVY  269 (660)
Q Consensus       196 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~TSGTTG~pK~v~~th~~l~~~~~~~~~~~~~~~~~~~~------~~~~  269 (660)
                                .............++++++|+|||||||.||+|++||+++.+.+......+     .+..      ++++
T Consensus       169 ----------~~~~~~~~~~~~~~~d~a~i~~TSGTTG~PKgV~~th~~l~~~~~~~~~~~-----~~~~~~~~~~~d~~  233 (480)
T 3t5a_A          169 ----------LDAPNGYTFKEDEYPSTAYLQYTSGSTRTPAGVVMSHQNVRVNFEQLMSGY-----FADTDGIPPPNSAL  233 (480)
T ss_dssp             ----------TTCC---CCCCSSCCSEEEEECC------CCCEEEEHHHHHHHHHHHHHHH-----CTTTTTCCCTTEEE
T ss_pred             ----------cccccCCCCCCCCCCceEEEEecCCCCCCCcEEEEeHHHHHHHHHHHHHHh-----ccccccCCCCCCeE
Confidence                      000112233455788999999999999999999999999999888877666     5555      8999


Q ss_pred             EEecChhHHHHHHH-HHHHhhcCcEEEEecC-----ChhhHHHHhhhhcCeEEEechHHHHHHHHHHHHHHHhhchHHHH
Q 006111          270 LSFLPLAHILDRVI-EEYFFRRGASVGYYHG-----DLNALRDDLMELKPTLLAGVPRVFEKIHEGIKKALEELRPLRRR  343 (660)
Q Consensus       270 l~~~pl~~~~g~~~-~l~~l~~G~~~v~~~~-----~~~~~~~~i~~~~~t~~~~~p~~~~~l~~~~~~~~~~~~~~~~~  343 (660)
                      ++++|++|.+|+.. ++.+++.|+++++.+.     ++..+++.++++++| +.++|+++..++.....           
T Consensus       234 l~~~pl~h~~g~~~~~~~~l~~G~~~v~~~~~~~~~~~~~~~~~i~~~~~t-~~~~p~~~~~l~~~~~~-----------  301 (480)
T 3t5a_A          234 VSWLPFYHDMGLVIGICAPILGGYPAVLTSPVSFLQRPARWMHLMASDFHA-FSAAPNFAFELAARRTT-----------  301 (480)
T ss_dssp             EECCCTTSTTHHHHHTHHHHHHTCCEEECCHHHHHHCTHHHHHHTTSSSEE-EEEECHHHHHHHHHHCC-----------
T ss_pred             EEeCCCcCccHHHHHHHHHHHcCCceEEECHHHHHHCHHHHHHHHHhhcee-EeeChHHHHHHHHhhcC-----------
Confidence            99999999999875 6788999999999862     889999999999999 88899988877543110           


Q ss_pred             HHHHHHHHHHHHHhhCCCCCCcchhhhHHHHHHHHHHhCCcEeEEEEccCCCCHHHHHHHHHhcC------CceeeecCC
Q 006111          344 IFDALYKYKLAWMNMGYKQREASPLADLLAFRKVKARLGGRLRLVISGGAPLSTEVEEFLRVTCC------AFLVQGYGL  417 (660)
Q Consensus       344 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lr~i~~~G~~l~~~~~~~~~~~~~------~~v~~~YG~  417 (660)
                                            .+.....+        +++||.+++||+++++++.+++.+.++      +.+++.||+
T Consensus       302 ----------------------~~~~~~~~--------l~~lr~i~~gG~~l~~~~~~~~~~~~~~~~~~~~~~~~~YG~  351 (480)
T 3t5a_A          302 ----------------------DDDMAGRD--------LGNILTILSGSERVQAATIKRFADRFARFNLQERVIRPSYWL  351 (480)
T ss_dssp             ----------------------TGGGTTCC--------CTTCCEEEECCTTCCHHHHHHHHHHSGGGTCCGGGEEEEEEE
T ss_pred             ----------------------cccccccc--------hhhhheeeecCCcCCHHHHHHHHHHHhhcCCChhhccccccc
Confidence                                  01111111        259999999999999999999999874      469999999


Q ss_pred             CCCCCceecccCCC------------------------ccccCccCCCccCeeEEeeecCCCCCCCCCCCCCceEEEccC
Q 006111          418 TETCGPTTVCFPDE------------------------MCMVGTAGPVSVYSELRLEEVPEMGYSPLDDPPCGEVCVRGK  473 (660)
Q Consensus       418 tE~~~~~~~~~~~~------------------------~~~~~~~G~~~~~~~v~ivd~~~~~~~~~~~~~~Gei~v~g~  473 (660)
                      ||++..++......                        .....++|+|++ ++++|+| ++++ .+++.|+.|||+|+||
T Consensus       352 TE~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~G~p~~-~~~~ivd-~~~g-~~~~~g~~GEl~v~g~  428 (480)
T 3t5a_A          352 AEATVYVATSKPGQPPETVDFDTESLSAGHAKPCAGGGATSLISYMLPRS-PIVRIVD-SDTC-IECPDGTVGEIWVHGD  428 (480)
T ss_dssp             TTTTEEEEECCTTSSCCEEEECHHHHHTTBCCCCCSSSCEEEECEECCSS-SEEEEEE-TTTT-EECCTTBCEEEEEEST
T ss_pred             cccceeEeecccCCCcceEEecHHHhccCceeecCCCCcceeeecCcccC-CEEEEEc-CCCC-cCCCCCCEEEEEEeCC
Confidence            99998877655432                        123468999999 9999999 5533 3455678999999999


Q ss_pred             CcccccCCCchhhhhcc------------cCCccccCceEEECCCCcEEEEec
Q 006111          474 TLFSGYYKNPDLTRESI------------IDGWFHTGDIGQILPNGVVKIIDR  514 (660)
Q Consensus       474 ~~~~gy~~~~~~~~~~~------------~~g~~~TGDl~~~~~~G~l~~~GR  514 (660)
                      +++.||+++++.+.+.|            .+|||+|||+|++| ||+|+++||
T Consensus       429 ~v~~GY~~~pe~t~~~f~~~~~~~~~~~~~~~w~~TGDlg~~d-dG~l~~~GR  480 (480)
T 3t5a_A          429 NVANGYWQKPDESERTFGGKIVTPSPGTPEGPWLRTGDSGFVT-DGKMFIIGR  480 (480)
T ss_dssp             TSCCCBTTBHHHHHHHHCBCCSSCCTTCCCCCBEEEEEEEEEE-TTEEEECC-
T ss_pred             ccccccccCcchhHHHHhhhhccccCCCCCCCeeeccceeeEE-CCEEEEeCC
Confidence            99999999999999998            35699999999997 999999998

>4gs5_A Acyl-COA synthetase (AMP-forming)/AMP-acid ligase protein; structural genomics, PSI-biology; 2.02A {Dyadobacter fermentans}

Probab=100.00  E-value=5.6e-50  Score=416.13  Aligned_cols=314  Identities=17%  Similarity=0.122  Sum_probs=258.3

Q ss_pred             CCceEEEEecCCCCCCCceeeecchhHHHHhhhhhhhcccccCCCCCCcEEEEecChhHHHHHHHHHHHhhcCcEEEEec
Q 006111          219 PFNICTIMYTSGTSGDPKGVVLTHETIATFVSGVDLFLDQFEDKMTVDDVYLSFLPLAHILDRVIEEYFFRRGASVGYYH  298 (660)
Q Consensus       219 ~~~~~~i~~TSGTTG~pK~v~~th~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~pl~~~~g~~~~l~~l~~G~~~v~~~  298 (660)
                      .|++++|+|||||||.||+|++||+++.+.+..+...+     ++.++|++++++|++|.+|+..++.++..|+++++.+
T Consensus        36 ~d~~a~Il~TSGTTG~PKgV~~th~~l~~~~~~~~~~~-----~~~~~d~~l~~~pl~h~~gl~~~~~~l~~g~~~~~~~  110 (358)
T 4gs5_A           36 GGAREFVLHTSGSTGMPKPITVTRAQLAASAAMTGKAL-----SLGPGTRALVCLNVGYIAGLMMLVRGMELDWELTVTE  110 (358)
T ss_dssp             HTCSEEEEEEECTTSSEEEEEEEHHHHHHHHHHHHHHT-----TCCTTCEEEECSCTTSHHHHHHHHHHHHHTCEEEEEC
T ss_pred             CCCCEEEEECCcccccCcEEEEeHHHHHHHHHHHHHHh-----CCCCCCEEEEECChHHHHHHHHHHHHHHhCcEEEecC
Confidence            47899999999999999999999999999998888777     8899999999999999999988888999999998887


Q ss_pred             CChhhHHHHhhhhcCeEEEechHHHHHHHHHHHHHHHhhchHHHHHHHHHHHHHHHHHhhCCCCCCcchhhhHHHHHHHH
Q 006111          299 GDLNALRDDLMELKPTLLAGVPRVFEKIHEGIKKALEELRPLRRRIFDALYKYKLAWMNMGYKQREASPLADLLAFRKVK  378 (660)
Q Consensus       299 ~~~~~~~~~i~~~~~t~~~~~p~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  378 (660)
                      . ...++..|+++++|+++++|+++..|++....                                      ..++    
T Consensus       111 ~-~~~~~~~i~~~~~t~~~~~P~~l~~ll~~~~~--------------------------------------~~~l----  147 (358)
T 4gs5_A          111 P-TANPLAGLDHADFDFVAMVPMQLQSILENSAT--------------------------------------SGQV----  147 (358)
T ss_dssp             C-CSCTTTTCSSCCCSEEEECHHHHHHHHHCTTT--------------------------------------GGGG----
T ss_pred             c-cccHHHHHHHhCCeEEEcChHHHHHhhccccc--------------------------------------cccC----
Confidence            4 23446789999999999999999988652110                                      0112    


Q ss_pred             HHhCCcEeEEEEccCCCCHHHHHHHHHhcCCceeeecCCCCCCCceecccCCCccccCccCCCccCeeEEeeecCCCCCC
Q 006111          379 ARLGGRLRLVISGGAPLSTEVEEFLRVTCCAFLVQGYGLTETCGPTTVCFPDEMCMVGTAGPVSVYSELRLEEVPEMGYS  458 (660)
Q Consensus       379 ~~~~~~lr~i~~~G~~l~~~~~~~~~~~~~~~v~~~YG~tE~~~~~~~~~~~~~~~~~~~G~~~~~~~v~ivd~~~~~~~  458 (660)
                          ++||.+++||+++++++.+++++ +++++++.||+||++..++....+.... +++|.+.|++++.+.+       
T Consensus       148 ----~~lr~v~~gG~~l~~~~~~~~~~-~~~~~~~~YG~TEt~~~~~~~~~~~~~~-g~~~~~~pgv~~~~~~-------  214 (358)
T 4gs5_A          148 ----DRLGKVLLGGAPVNHALAMQISD-LAMPVYQSYGMTETVSHVALKALNGPEA-SELYVFLPGIQYGVDE-------  214 (358)
T ss_dssp             ----GGGCSEEECSSCCCHHHHHHHHT-CSSCEEEEEECGGGSSEEEEEECSSTTC-CSCEEECTTCEEEECT-------
T ss_pred             ----CcceEEEEcccCCCchheecccc-cCceEEeccccccccceeeccccccccc-ceeeccCCCeEEEecC-------
Confidence                38999999999999999999987 5999999999999998888776655443 7889999999888755       


Q ss_pred             CCCCCCCceEEEccCCcccccCCCchhhhhcccCCccccCceEEECCCCcEEEEeccCCeeEcCCCeeecchhHHHHH--
Q 006111          459 PLDDPPCGEVCVRGKTLFSGYYKNPDLTRESIIDGWFHTGDIGQILPNGVVKIIDRKKNLIKISQGEYVALEYLENVY--  536 (660)
Q Consensus       459 ~~~~~~~Gei~v~g~~~~~gy~~~~~~~~~~~~~g~~~TGDl~~~~~~G~l~~~GR~~d~i~~~~G~~v~~~~iE~~l--  536 (660)
                            .|||+++|+..               .+|||+|||+|++|++| ++++||.||+||+ +|++|+|.+||++|  
T Consensus       215 ------~Gel~~~g~~~---------------~~g~~~TGDlg~~d~~g-~~~~GR~dd~Ik~-~G~~v~p~eIE~~l~~  271 (358)
T 4gs5_A          215 ------RGCLHISGAVT---------------NGQTVQTNDLVEIHGNA-FQWIGRADNVINS-GGVKIVLDQIDQRIAA  271 (358)
T ss_dssp             ------TSEEEEESGGG---------------TTCCEEEEEEEEECSSE-EEEEEEGGGEEEE-TTEEEEHHHHHHHHHH
T ss_pred             ------cCceEEecccc---------------cCcceecCCccccccCc-eEEcccccCeEEE-CCEEECHHHHHHHHHH
Confidence                  59999998632               37899999999999888 6677999999997 89999999999877  


Q ss_pred             -hcCcCcceEEEE-ecCCC---CeEEEEEEcChhhHHHHHHHCCCCCcHHHHhccHHHHHHHHHHHHHHHHhCCCCCcee
Q 006111          537 -CVAPIIEDIWVY-GDSLK---SMLVAVVVPCEEDTKKWAYSNGHAGSFLELCSLVQLQNYILSELKNAAERNKLRGFEH  611 (660)
Q Consensus       537 -~~~p~V~~~~V~-~~~~~---~~~~a~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~l~~~~~  611 (660)
                       .+||.|.+|+|+ +.+++   +.++|+|+.....                         ...++|+++++ .+||.|++
T Consensus       272 ~~~~p~V~~a~vv~~~~d~~~ge~~~a~v~~~~~~-------------------------~~~~~l~~~l~-~~L~~~~~  325 (358)
T 4gs5_A          272 VFHHLNIGNAFFCWWEPDAKLGQKLVLVIENAMPE-------------------------ALTERLTAEIR-SRVSTYEN  325 (358)
T ss_dssp             HHHHHTCCCCEEEEEEEETTTEEEEEEEEESCCCH-------------------------HHHHHHHHHHH-HHSCGGGS
T ss_pred             hccCCCccEEEEEEecCCccCCEEEEEEEECCCCC-------------------------cCHHHHHHHHH-hhCCCCCC
Confidence             468999999886 44433   4788888776532                         11234555554 67999999


Q ss_pred             eeEEEEecCCCCCCCCccccccccchHHHHHHHHHHH
Q 006111          612 IKGVILDPRPFDMERDLVTATLKKKRNKLLIYYQVEI  648 (660)
Q Consensus       612 p~~i~~~~~~~~~~~~P~t~~GKv~R~~l~~~~~~~i  648 (660)
                      |+.|++++      .+|+|++||++|++|++++.+..
T Consensus       326 P~~i~~v~------~lP~t~~GKi~R~~L~~~l~e~~  356 (358)
T 4gs5_A          326 PKHIYFAK------AFAKTQTDKIDKRATFQKLSDSS  356 (358)
T ss_dssp             CSCEEEES------SCCBCTTSCBCHHHHHHHTC---
T ss_pred             ceEEEEEC------CcCCCCCCChhHHHHHHHhhhhc
Confidence            99999974      45899999999999999886643

>3qov_A Phenylacetate-coenzyme A ligase; acetyl-COA synthetase-like, structural genomics, joint cente structural genomics, JCSG; HET: MSE ADP COA; 2.20A {Bacteroides thetaiotaomicron} PDB: 3s89_A*

Probab=100.00  E-value=9.2e-44  Score=381.20  Aligned_cols=334  Identities=17%  Similarity=0.176  Sum_probs=248.9

Q ss_pred             CCCC-CceEEEEecCCCCCCCceeeecchhHHHHhhhhhhhcccccCCCCCCcEEEEecChhHHHHHH-HHHHHhhcCcE
Q 006111          216 PPQP-FNICTIMYTSGTSGDPKGVVLTHETIATFVSGVDLFLDQFEDKMTVDDVYLSFLPLAHILDRV-IEEYFFRRGAS  293 (660)
Q Consensus       216 ~~~~-~~~~~i~~TSGTTG~pK~v~~th~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~pl~~~~g~~-~~l~~l~~G~~  293 (660)
                      ...+ +++++++|||||||.||+|++||+++.+.+..+...+..  .++..+|++++.+|+.|..+.. ..+.++..|++
T Consensus        81 ~~~~~~~~a~i~~TSGTTG~PK~v~~th~~~~~~~~~~~~~~~~--~~~~~~d~~~~~~~~~~~~~~~~~~~~~l~~G~~  158 (436)
T 3qov_A           81 AGDMKRDGVRIHSSSGTTGNPTVIVHSQHDLDSWANLVARCLYM--VGIRKTDVFQNSSGYGMFTGGLGFQYGAERLGCL  158 (436)
T ss_dssp             CSCHHHHEEEEEECSCSSSCCCEEEEEHHHHHHHHHHHHHHHHH--TTCCTTSEEEECSCCTTCHHHHHHHHHHHHHTCE
T ss_pred             cCCCcCCeEEEEECCCcCCCCeEEEECHHHHHHHHHHHHHHHHH--cCCCCCCEEEECcccccchhHHHHHHHHHHcCCE
Confidence            3455 899999999999999999999999998777665332211  2678899999999987655544 46777999999


Q ss_pred             EEEecC-ChhhHHHHhhhhcCeEEEechHHHHHHHHHHHHHHHhhchHHHHHHHHHHHHHHHHHhhCCCCCCcchhhhHH
Q 006111          294 VGYYHG-DLNALRDDLMELKPTLLAGVPRVFEKIHEGIKKALEELRPLRRRIFDALYKYKLAWMNMGYKQREASPLADLL  372 (660)
Q Consensus       294 ~v~~~~-~~~~~~~~i~~~~~t~~~~~p~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  372 (660)
                      +++.+. ++..+++.|+++++|+++++|+++..|++.........                                   
T Consensus       159 ~~~~~~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~~-----------------------------------  203 (436)
T 3qov_A          159 TVPAAAGNSKRQIKFISDFKTTALHAIPSYAIRLAEVFQEEGIDP-----------------------------------  203 (436)
T ss_dssp             EECCCSCCHHHHHHHHHHHTCCEEECCHHHHHHHHHHHHHTTCCT-----------------------------------
T ss_pred             EEeCCCCCHHHHHHHHHHHCCCEEEECHHHHHHHHHHHHHcCCCc-----------------------------------
Confidence            988765 89999999999999999999999999876543321000                                   


Q ss_pred             HHHHHHHHhCCcEeEEEEccCCCCHHHHHHHHHhcCCceeeecCCCCCCCc-eecccCCCccccCccCCCccCeeEEeee
Q 006111          373 AFRKVKARLGGRLRLVISGGAPLSTEVEEFLRVTCCAFLVQGYGLTETCGP-TTVCFPDEMCMVGTAGPVSVYSELRLEE  451 (660)
Q Consensus       373 ~~~~~~~~~~~~lr~i~~~G~~l~~~~~~~~~~~~~~~v~~~YG~tE~~~~-~~~~~~~~~~~~~~~G~~~~~~~v~ivd  451 (660)
                              ..+++|.+++||+++++++.+.+++.+|+++++.||+||+++. +......   . ...|.+.+++.++|+|
T Consensus       204 --------~~~~lr~i~~gGe~l~~~~~~~~~~~~g~~v~~~YG~TE~~~~~~~~~~~~---~-~g~~~~~~~~~v~i~d  271 (436)
T 3qov_A          204 --------RETTLKTLVIGAEPHTDEQRRKIERMLNVKAYNSFGMTEMNGPGVAFECQE---Q-NGMHFWEDCYLVEIID  271 (436)
T ss_dssp             --------TSSSCCEEEEESSCCCHHHHHHHHHHHTSEEEEEEEEGGGTEEEEEEECTT---C-SSEEECTTTEEEEEEC
T ss_pred             --------ccCCccEEEEeCCcCCHHHHHHHHHHhCccEEecCcchhhcCCeeEEecCC---C-CeeEEccCceEEEEEE
Confidence                    0148999999999999999999999999999999999999654 3332221   1 2356677899999999


Q ss_pred             cCCCCCCCCCCCCCceEEEccCCcccccCCCchhhhhcccCCccccCceEEECCCC------c---EEEEeccCCeeEcC
Q 006111          452 VPEMGYSPLDDPPCGEVCVRGKTLFSGYYKNPDLTRESIIDGWFHTGDIGQILPNG------V---VKIIDRKKNLIKIS  522 (660)
Q Consensus       452 ~~~~~~~~~~~~~~Gei~v~g~~~~~gy~~~~~~~~~~~~~g~~~TGDl~~~~~~G------~---l~~~GR~~d~i~~~  522 (660)
                       ++.+ .+++.|+.|||+|+|.            +...|.++||+|||+|+++++|      .   +++.||.||+|++ 
T Consensus       272 -~~~g-~~~~~g~~Gel~v~~~------------~~~~~~~~~y~TGDl~~~~~~gc~cG~~~~~il~i~GR~dd~ik~-  336 (436)
T 3qov_A          272 -PETG-EPVPEGEIGELVLTTL------------DREMMPLIRYRTRDLTRILPGKCPCGRTHLRIDRIKGRSDDMFII-  336 (436)
T ss_dssp             -TTTC-SBCSTTCCEEEEEEES------------SCCSSCCCSEEEEEEECEECSCCTTCCCSCEECCCCCBSSSCEEE-
T ss_pred             -CCCC-CCCCCCCceEEEEecc------------CcCCceEEEEEcCCEEEEcCCCCCCCCCccccCcccCccCCEEEE-
Confidence             4433 3455678999999983            2334568999999999999998      5   6999999999998 


Q ss_pred             CCeeecchhHHHHHhcCcCcceEEEEecCC---CCeEEEEEEcChhhHHHHHHHCCCCCcHHHHhccHHHHHHHHHHHHH
Q 006111          523 QGEYVALEYLENVYCVAPIIEDIWVYGDSL---KSMLVAVVVPCEEDTKKWAYSNGHAGSFLELCSLVQLQNYILSELKN  599 (660)
Q Consensus       523 ~G~~v~~~~iE~~l~~~p~V~~~~V~~~~~---~~~~~a~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~  599 (660)
                      +|++|+|.+||++|.+||+|.+++|++.++   .+.++|+|++. +..         ..+..   ...++.+++.+.|.+
T Consensus       337 ~G~~v~p~eiE~~l~~~p~v~~~~vv~~~~~~~~~~l~a~v~~~-~~~---------~~~~~---~~~~l~~~l~~~l~~  403 (436)
T 3qov_A          337 KGVNIFPMQVEKILVQFPELGSNYLITLETVNNQDEMIVEVELS-DLS---------TDNYI---ELEKIRRDIIRQLKD  403 (436)
T ss_dssp             TTEEECHHHHHHHHTTCTTEEEEEEEEEEEETTEEEEEEEEEEC-TTC---------CCCHH---HHHHHHHHHHHHHHH
T ss_pred             CCEEECHHHHHHHHHhCcCcCCcEEEEEEcCCCCcEEEEEEEEc-Ccc---------ccchh---hHHHHHHHHHHHHHH
Confidence            899999999999999999999999988654   35899999988 430         00000   012344444444433


Q ss_pred             HHHhCCCCCceeeeEEEEecCCCCCCCCccccccccchHH
Q 006111          600 AAERNKLRGFEHIKGVILDPRPFDMERDLVTATLKKKRNK  639 (660)
Q Consensus       600 ~~~~~~l~~~~~p~~i~~~~~~~~~~~~P~t~~GKv~R~~  639 (660)
                      ++        ++|..|.+++    .+.+|+|+ ||++|..
T Consensus       404 ~~--------~~p~~i~~v~----~~~lP~t~-GKi~R~~  430 (436)
T 3qov_A          404 EI--------LVTPKVKLVK----KGSLPQSE-GKAVRVK  430 (436)
T ss_dssp             HH--------SSCCEEEEEC----TTCCC--------CEE
T ss_pred             hc--------CCceEEEEeC----CCcccCcC-CcceEEE
Confidence            22        4566788774    24679999 9999863

>2y4o_A Phenylacetate-coenzyme A ligase; phenylacetic acid degradation pathway; HET: DLL; 1.90A {Burkholderia cenocepacia}

Probab=100.00  E-value=9.1e-44  Score=382.04  Aligned_cols=338  Identities=17%  Similarity=0.136  Sum_probs=256.0

Q ss_pred             CCCCCceEEEEecCCCCCCCceeeecchhHHHHhhhhhhhcccccCCCCCCcEEEEecCh-hHHHHHHHHHHHhhcCcEE
Q 006111          216 PPQPFNICTIMYTSGTSGDPKGVVLTHETIATFVSGVDLFLDQFEDKMTVDDVYLSFLPL-AHILDRVIEEYFFRRGASV  294 (660)
Q Consensus       216 ~~~~~~~~~i~~TSGTTG~pK~v~~th~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~pl-~~~~g~~~~l~~l~~G~~~  294 (660)
                      ...++++++++|||||||.||+|++||+++......+...+..  .++..+|++++.+|+ +|..++...+.++..|+++
T Consensus        88 ~~~~~~~~~i~~TSGTTG~PK~v~~t~~~~~~~~~~~~~~~~~--~~~~~~d~~l~~~~~~~~~~~~~~~~~~~~~G~~~  165 (443)
T 2y4o_A           88 AVPREQVVRVHASSGTTGKPTVVGYTARDIDTWANVTARSIRA--AGGRPGDTLHNAFGYGLFTGGLGIHYGAERLGCMV  165 (443)
T ss_dssp             SSCGGGCCEEEEECCSSSSCEEEEECHHHHHHHHHHHHHHHHH--TTCCTTCEEEECSCCSSSHHHHHHHHHHHHHTCEE
T ss_pred             CCChhheEEEEECCCCCCCceEEecCHHHHHHHHHHHHHHHHH--cCCCCCCEEEEeccCcccccHHHHHHHHHHcCCEE
Confidence            4467899999999999999999999999998776554432211  267899999999998 5777776778889999999


Q ss_pred             EEecC-ChhhHHHHhhhhcCeEEEechHHHHHHHHHHHHHHHhhchHHHHHHHHHHHHHHHHHhhCCCCCCcchhhhHHH
Q 006111          295 GYYHG-DLNALRDDLMELKPTLLAGVPRVFEKIHEGIKKALEELRPLRRRIFDALYKYKLAWMNMGYKQREASPLADLLA  373 (660)
Q Consensus       295 v~~~~-~~~~~~~~i~~~~~t~~~~~p~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  373 (660)
                      ++.+. ++..+++.|+++++|+++++|+++..|++.........                                    
T Consensus       166 ~~~~~~~~~~~~~~i~~~~~t~l~~~Ps~~~~l~~~~~~~~~~~------------------------------------  209 (443)
T 2y4o_A          166 VPMSGGQTEKQVQLIRDFEPKIILVTPSYMLNLIDEMVRQGMDP------------------------------------  209 (443)
T ss_dssp             ECCCSCCHHHHHHHHHHHCCSEEEECHHHHHHHHHHHHHTTCCG------------------------------------
T ss_pred             EECCCCCHHHHHHHHHHhCCcEEEECHHHHHHHHHHHHHcCCCc------------------------------------
Confidence            88776 99999999999999999999999999876433211000                                    


Q ss_pred             HHHHHHHhCCcEeEEEEccCCCCHHHHHHHHHhcCCceeeecCCCCCCCc-eecccCCCccccCccCCCccCeeEEeeec
Q 006111          374 FRKVKARLGGRLRLVISGGAPLSTEVEEFLRVTCCAFLVQGYGLTETCGP-TTVCFPDEMCMVGTAGPVSVYSELRLEEV  452 (660)
Q Consensus       374 ~~~~~~~~~~~lr~i~~~G~~l~~~~~~~~~~~~~~~v~~~YG~tE~~~~-~~~~~~~~~~~~~~~G~~~~~~~v~ivd~  452 (660)
                             ..+++|.+++||+++++++.+.+++.+|+++++.||+||+++. ++.......   ...+.+.+++.++|+| 
T Consensus       210 -------~~~~lr~i~~gGe~l~~~~~~~~~~~~g~~v~~~YG~TE~~g~~~~~~~~~~~---~g~~~~~~~~~~~i~d-  278 (443)
T 2y4o_A          210 -------AESSLKIGIFGAEPWTQALRNEVETRVGIDALDIYGLSEVMGPGVACECVETK---DGPVIWEDHFYPEIID-  278 (443)
T ss_dssp             -------GGSSCCEEEEESSCCCHHHHHHHHHHHTCEEEEEEEETTTTEEEEEEECTTTC---CSEEECTTTEEEEEEC-
T ss_pred             -------ccCCceEEEECCCcCCHHHHHHHHHHhCcCEEeccCchhhcCCeEEeccCCCC---CceEEccCCeEEEEEc-
Confidence                   0148999999999999999999999899999999999998543 333222111   1244567899999999 


Q ss_pred             CCCCCCCCCCCCCceEEEccCCcccccCCCchhhhhcccCCccccCceEEECCC-CcE-----EEEeccCCeeEcCCCee
Q 006111          453 PEMGYSPLDDPPCGEVCVRGKTLFSGYYKNPDLTRESIIDGWFHTGDIGQILPN-GVV-----KIIDRKKNLIKISQGEY  526 (660)
Q Consensus       453 ~~~~~~~~~~~~~Gei~v~g~~~~~gy~~~~~~~~~~~~~g~~~TGDl~~~~~~-G~l-----~~~GR~~d~i~~~~G~~  526 (660)
                      ++++ .+++.|+.|||+|+|.            +.+.|.++||+|||+|+++++ |++     ++.||.||+|++ +|++
T Consensus       279 ~~~g-~~~~~G~~Gel~v~~~------------t~~~~p~~~y~TGDl~~~~~~cG~~~~~l~~i~GR~~d~i~~-~G~~  344 (443)
T 2y4o_A          279 PVTG-EVLPDGSQGELVFTSL------------TKEAMPVIRYRTRDLTALLPPTARAMRRLAKITGRSDDMLIV-RGVN  344 (443)
T ss_dssp             TTTC-CBCCTTCCEEEEEEES------------SCSSSCCSSEEEEEEECEECCSSSSSCEECCCCEESSCCEEE-TTEE
T ss_pred             CCCC-CCCCCCCceEEEEeCC------------CcccChhheeecCCEEEEcCCCCCCccccCccccccCCeEEE-CCEE
Confidence            5432 3455678999999983            233456899999999999999 986     899999999997 7999


Q ss_pred             ecchhHHHHHhcCcCcceEEEEecCC---CCeEEEEEEcCh--hhHHHHHHHCCCCCcHHHHhccHHHHHHHHHHHHHHH
Q 006111          527 VALEYLENVYCVAPIIEDIWVYGDSL---KSMLVAVVVPCE--EDTKKWAYSNGHAGSFLELCSLVQLQNYILSELKNAA  601 (660)
Q Consensus       527 v~~~~iE~~l~~~p~V~~~~V~~~~~---~~~~~a~v~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~  601 (660)
                      |+|.+||++|.+||+|.+++|++.++   .+.++++|++.+  +..          ...   ....++.+++.+.     
T Consensus       345 v~p~eiE~~l~~~p~V~~~~vv~~~~~~~~~~~~a~v~~~~~~~~~----------~~~---~~~~~l~~~l~~~-----  406 (443)
T 2y4o_A          345 VFPSQIEEIVVALPLLSGQFQITLSRDGHMDRLDLAVELRSEAAAS----------VTD---GERAALARELQHR-----  406 (443)
T ss_dssp             ECHHHHHHHHHTSTTEEEEEEEEEEEETTEEEEEEEEEECHHHHTT----------CCH---HHHHHHHHHHHHH-----
T ss_pred             ECHHHHHHHHHhCcCcCccEEEEEecCCCCceEEEEEEECCccccc----------chh---hHHHHHHHHHHHH-----
Confidence            99999999999999999999887532   358889999886  310          000   0112233333332     


Q ss_pred             HhCCCCCc-eeeeEEEEecCCCCCCCCccccccccchHHHHH
Q 006111          602 ERNKLRGF-EHIKGVILDPRPFDMERDLVTATLKKKRNKLLI  642 (660)
Q Consensus       602 ~~~~l~~~-~~p~~i~~~~~~~~~~~~P~t~~GKv~R~~l~~  642 (660)
                          |+.| .+|..|.+++    ++++|+|++||++|+..++
T Consensus       407 ----l~~~~~~p~~v~~v~----~~~lP~t~~GKi~r~~~~r  440 (443)
T 2y4o_A          407 ----IKTMVGVSSGVTVLA----AGGIPATATGKARRVIDRR  440 (443)
T ss_dssp             ----HHHHTCCCCEEEEEC----TTCSCCCTTSCCCSEEECC
T ss_pred             ----HHHHhCCceEEEEeC----CCcccCccCCcceEEEecc
Confidence                3344 4677777773    3567999999999975443

>2y27_A Phenylacetate-coenzyme A ligase; phenylacetic acid degradation pathway; HET: MSE PG4 ATP; 1.60A {Burkholderia cenocepacia} PDB: 2y4n_A*

Probab=100.00  E-value=6.5e-43  Score=374.72  Aligned_cols=334  Identities=18%  Similarity=0.175  Sum_probs=254.9

Q ss_pred             CCCCCceEEEEecCCCCCCCceeeecchhHHHHhhhhhhhcccccCCCCCCcEEEEecCh-hHHHHHHHHHHHhhcCcEE
Q 006111          216 PPQPFNICTIMYTSGTSGDPKGVVLTHETIATFVSGVDLFLDQFEDKMTVDDVYLSFLPL-AHILDRVIEEYFFRRGASV  294 (660)
Q Consensus       216 ~~~~~~~~~i~~TSGTTG~pK~v~~th~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~pl-~~~~g~~~~l~~l~~G~~~  294 (660)
                      ...++++++++|||||||.||+|++||+++...+..+...+..  .++..+|++++.+|+ +|..++...+.++..|+++
T Consensus        86 ~~~~~~~~~i~~TSGTTG~PK~v~~t~~~~~~~~~~~~~~~~~--~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~G~~~  163 (437)
T 2y27_A           86 AVPQDRISRIHASSGTTGKPTVVGYTAADIDTWANLVARSIRA--AGARRGDKVHVSYGYGLFTGGLGAHYGAERAGLTV  163 (437)
T ss_dssp             SSCGGGCCEEEECCCTTSSCCEEEECHHHHHHHHHHHHHHHHH--TTCCTTCEEEECSCCSSSHHHHHHHHHHHHTTCEE
T ss_pred             cCChhHeEEEEECCCCCCCceEEecCHHHHHHHHHHHHHHHHH--cCCCCCCEEEEcccccccccchHHHHHHHHcCCEE
Confidence            4467899999999999999999999999998776554432111  267889999999998 6777777778889999999


Q ss_pred             EEecC-ChhhHHHHhhhhcCeEEEechHHHHHHHHHHHHHHHhhchHHHHHHHHHHHHHHHHHhhCCCCCCcchhhhHHH
Q 006111          295 GYYHG-DLNALRDDLMELKPTLLAGVPRVFEKIHEGIKKALEELRPLRRRIFDALYKYKLAWMNMGYKQREASPLADLLA  373 (660)
Q Consensus       295 v~~~~-~~~~~~~~i~~~~~t~~~~~p~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  373 (660)
                      ++.+. ++..+++.|+++++|+++++|+++..|++.........                                    
T Consensus       164 ~~~~~~~~~~~~~~i~~~~~t~l~~~Ps~~~~l~~~~~~~~~~~------------------------------------  207 (437)
T 2y27_A          164 IPFGGGQTEKQVQLIQDFRPDIIMVTPSYMLSIADEIERQGLDP------------------------------------  207 (437)
T ss_dssp             ECCCSCCHHHHHHHHHHHCCSEEEECHHHHHHHHHHHHHTTCCG------------------------------------
T ss_pred             EeCCCCCHHHHHHHHHHhCCCEEEECHHHHHHHHHHHHHcCCCc------------------------------------
Confidence            87765 89999999999999999999999999876543211000                                    


Q ss_pred             HHHHHHHhCCcEeEEEEccCCCCHHHHHHHHHhcCCceeeecCCCCCCCc-eecccCCCccccCccCCCccCeeEEeeec
Q 006111          374 FRKVKARLGGRLRLVISGGAPLSTEVEEFLRVTCCAFLVQGYGLTETCGP-TTVCFPDEMCMVGTAGPVSVYSELRLEEV  452 (660)
Q Consensus       374 ~~~~~~~~~~~lr~i~~~G~~l~~~~~~~~~~~~~~~v~~~YG~tE~~~~-~~~~~~~~~~~~~~~G~~~~~~~v~ivd~  452 (660)
                             ..+++|.+++||+++++++.+.+++.+|+++++.||+||+++. ++.......   ...+.+.+++.++|+| 
T Consensus       208 -------~~~~lr~i~~gGe~l~~~~~~~~~~~~g~~v~~~YG~TE~~g~~~~~~~~~~~---~g~~~~~~~~~~~i~d-  276 (437)
T 2y27_A          208 -------VQSSLRIGIFGAEPWTNDMRVAIEQRMGIDAVDIYGLSEVMGPGVASECVETK---DGPTIWEDHFYPEIID-  276 (437)
T ss_dssp             -------GGSSCCEEEEESSCCCHHHHHHHHHHHTSEEEEEEEETTTTEEEEEECCTTTC---SSCEECTTTEEEEEEC-
T ss_pred             -------ccCCeeEEEEcCccCCHHHHHHHHHHHCcCEEecCCchhhcCCeeEEecCCCC---CceeEccCceEEEEEc-
Confidence                   0148999999999999999999998889999999999998543 333222111   1245567899999999 


Q ss_pred             CCCCCCCCCCCCCceEEEccCCcccccCCCchhhhhcccCCccccCceEEECC-CCcE-----EEEeccCCeeEcCCCee
Q 006111          453 PEMGYSPLDDPPCGEVCVRGKTLFSGYYKNPDLTRESIIDGWFHTGDIGQILP-NGVV-----KIIDRKKNLIKISQGEY  526 (660)
Q Consensus       453 ~~~~~~~~~~~~~Gei~v~g~~~~~gy~~~~~~~~~~~~~g~~~TGDl~~~~~-~G~l-----~~~GR~~d~i~~~~G~~  526 (660)
                      ++++ .+++.|+.|||+|+|.            +.+.|.++||+|||+|++++ +|++     ++.||.||+|++ +|++
T Consensus       277 ~~~g-~~~~~g~~Gel~v~~~------------t~~~~~~~~y~TGDl~~~~~~~G~~~~~i~~i~GR~~d~i~~-~G~~  342 (437)
T 2y27_A          277 PETG-EVLPDGELGELVFTSL------------TKEALPIIRYRTRDLTRLLPGTARTMRRMEKITGRSDDMMIV-RGVN  342 (437)
T ss_dssp             TTTC-CBCCTTCCEEEEEEES------------SCSSSCCCSEEEEEEECEECCSSSSSCEECCCCEEGGGCEEE-TTEE
T ss_pred             CCCC-CCCCCCCccEEEEecC------------CcCCchhheeecCCEEEEeCCCCCCccccCccccccCCeEEE-CCeE
Confidence            5432 3455678999999982            23445689999999999998 6985     899999999997 8999


Q ss_pred             ecchhHHHHHhcCcCcceEEEEecC---CCCeEEEEEEcChhhHHHHHHHCCCCCcHHHHhccHHHHHHHHHHHHHHHHh
Q 006111          527 VALEYLENVYCVAPIIEDIWVYGDS---LKSMLVAVVVPCEEDTKKWAYSNGHAGSFLELCSLVQLQNYILSELKNAAER  603 (660)
Q Consensus       527 v~~~~iE~~l~~~p~V~~~~V~~~~---~~~~~~a~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~  603 (660)
                      |+|.+||++|.+||+|.+++|++.+   ..+.++|+|++.++..          .+.   ....++.+++.+        
T Consensus       343 v~p~eiE~~l~~~p~V~~~~vv~~~~~~~~~~l~a~v~~~~~~~----------~~~---~~~~~l~~~l~~--------  401 (437)
T 2y27_A          343 VFPTQIEEQLLKQRALAPHYQIVLTKEGPLDVLTLNVEPCPETA----------PDT---AAIQVAKQALAY--------  401 (437)
T ss_dssp             ECHHHHHHHHTTCTTBCSCCEEEEEEETTEEEEEEEECBCTTTT----------TCH---HHHHHHHHHHHH--------
T ss_pred             ECHHHHHHHHHhCcCcCccEEEEEeecCCCceEEEEEEECCCcc----------chh---hhHHHHHHHHHH--------
Confidence            9999999999999999999888743   2358999999886530          000   011223333332        


Q ss_pred             CCCCCc-eeeeEEEEecCCCCCCCCccccccccchHH
Q 006111          604 NKLRGF-EHIKGVILDPRPFDMERDLVTATLKKKRNK  639 (660)
Q Consensus       604 ~~l~~~-~~p~~i~~~~~~~~~~~~P~t~~GKv~R~~  639 (660)
                       .|+.| .+|..|.+++    ++++|+|+ ||++|..
T Consensus       402 -~l~~~~~~p~~v~~v~----~~~lP~t~-GKi~r~~  432 (437)
T 2y27_A          402 -DIKSLIGVTAVINVLP----VNGIERSV-GKARRVV  432 (437)
T ss_dssp             -HHHHHHCCCEEEEECC----TTCSCCCS-SSCCCEE
T ss_pred             -HHHHhcCCceEEEEeC----CCCccCCC-CcceEEE
Confidence             33445 4677777763    25679999 9999874

>3hgu_A EHPF; phenazine, antibiotic, biosynthetic protein; 1.95A {Pantoea agglomerans} PDB: 3hgv_A 3l2k_A*

Probab=99.95  E-value=2.2e-27  Score=248.08  Aligned_cols=236  Identities=17%  Similarity=0.160  Sum_probs=172.4

Q ss_pred             CCCCceEEEEecCCCCCCCceeeecchhHHHHhhhhhhhcccccCCCCCCcEEEEecCh-hHHHHHHHHHHHhhcCcEEE
Q 006111          217 PQPFNICTIMYTSGTSGDPKGVVLTHETIATFVSGVDLFLDQFEDKMTVDDVYLSFLPL-AHILDRVIEEYFFRRGASVG  295 (660)
Q Consensus       217 ~~~~~~~~i~~TSGTTG~pK~v~~th~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~pl-~~~~g~~~~l~~l~~G~~~v  295 (660)
                      ..++++++|+|||||||.||+|.++|+++...+......+..  .++..++++++.+|+ +|..++...+.++..|+.++
T Consensus        88 ~~~~~~a~i~~TSGTTG~PKgv~~t~~~~~~~~~~~~~~~~~--~~~~~~d~~l~~~p~g~~~~g~~~~~~~~~~G~~v~  165 (369)
T 3hgu_A           88 LPADSHPQVYESGGTTGAPKYVVAYDAWIEALISWRMSGYQH--RPGRPSGNTLAAIPTGPHIVGAINKERALRLGGMFF  165 (369)
T ss_dssp             SCTTCCCEEEEECC---CCEEEEECHHHHHHHHHHHTTTTTT--STTCCCCEEEECSCCTTCHHHHHHHHHHHHTTSCEE
T ss_pred             CCccccEEEEECCCCCCCCCEEEECHHHHHHHHHHHHhhHHh--hCCCCcceEEEecCCCchhhhHHHHHHHHHcCCEEE
Confidence            467889999999999999999999999999888754432221  267889999999999 99999888777788999433


Q ss_pred             EecCChh-----------------------hHHHHhhhhcCeEEEechHHHHHHHHHHHHHHHhhchHHHHHHHHHHHHH
Q 006111          296 YYHGDLN-----------------------ALRDDLMELKPTLLAGVPRVFEKIHEGIKKALEELRPLRRRIFDALYKYK  352 (660)
Q Consensus       296 ~~~~~~~-----------------------~~~~~i~~~~~t~~~~~p~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~  352 (660)
                      ....++.                       .+++.|+++++|+++++|+++..|++....                    
T Consensus       166 ~~~~dp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~t~l~~~Ps~~~~l~~~~~~--------------------  225 (369)
T 3hgu_A          166 SIDIDPRWVKRSLSEGDTATVRKYTHHLVDQVQNTLMNQDIRFLVTTPPVLRELLKRPEV--------------------  225 (369)
T ss_dssp             CCCCCHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHSCEEEEEECHHHHHHHTTCHHH--------------------
T ss_pred             CccCChHHHHHhhcccchhhhHHHHHHHHHHHHHHHHhCCCCEEEeCHHHHHHHHhhhhh--------------------
Confidence            3333666                       788899999999999999999998754211                    


Q ss_pred             HHHHhhCCCCCCcchhhhHHHHHHHHHHhCCcEeEEEEccCCCCHHHHHHHH-Hhc-CCceeeecCCCCCCCceecccCC
Q 006111          353 LAWMNMGYKQREASPLADLLAFRKVKARLGGRLRLVISGGAPLSTEVEEFLR-VTC-CAFLVQGYGLTETCGPTTVCFPD  430 (660)
Q Consensus       353 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lr~i~~~G~~l~~~~~~~~~-~~~-~~~v~~~YG~tE~~~~~~~~~~~  430 (660)
                                       ...++        +++|.+++||+++++++.+.++ +.+ ++++++.||+||+++++..++. 
T Consensus       226 -----------------~~~~~--------~~lr~i~~gGe~l~~~~~~~~~~~~~p~~~v~~~YG~TE~~~~~~~~~~-  279 (369)
T 3hgu_A          226 -----------------VLQMK--------QSLAQITLGGTELNLDEIKFIASEILPDCEFSASYGSTSALGVSRSLLI-  279 (369)
T ss_dssp             -----------------HHHHH--------HHCSEEEEESSCCCHHHHHHHHHHTCTTSEEEEEEEEGGGTEEEEECCB-
T ss_pred             -----------------hcccc--------CCeeEEEECCccCCHHHHHHHHHHhCCCcEEEcccCchhhhcceecccc-
Confidence                             01112        2899999999999999999999 898 8999999999999876643321 


Q ss_pred             CccccCccCCC------ccCeeEEeeecC-CCCCCCCCCCCCceEEEccCCcccccCCCchhhhhcccCCccccCceEEE
Q 006111          431 EMCMVGTAGPV------SVYSELRLEEVP-EMGYSPLDDPPCGEVCVRGKTLFSGYYKNPDLTRESIIDGWFHTGDIGQI  503 (660)
Q Consensus       431 ~~~~~~~~G~~------~~~~~v~ivd~~-~~~~~~~~~~~~Gei~v~g~~~~~gy~~~~~~~~~~~~~g~~~TGDl~~~  503 (660)
                           .++|.+      +++++++|+| + ++.  +++.|+.|||+|++....            .+ --+|+|||++.+
T Consensus       280 -----~~~G~~~~~~~~~~~~~v~ivD-~~~g~--~vp~G~~GEl~vt~l~~~------------~~-l~ry~tgD~~~~  338 (369)
T 3hgu_A          280 -----TSESQQVIYDSFSPFITYDVVD-SITAQ--TVEYGERGNVIVTHLSPW------------AF-YPRVAERDTAIR  338 (369)
T ss_dssp             -----CTTCSSCEEECCTTTEEEEEEC-TTTCS--BCCTTCEEEEEEEEEETT------------EE-EEEEEEEEEEEE
T ss_pred             -----ccCCCcccccCCCCCeEEEEEC-CCCCc--CCCCCCceEEEEEEcCcc------------cc-cccccCCceEEE
Confidence                 247888      9999999999 5 444  555678999999983211            11 113889999887


Q ss_pred             CCC--C-------cEEEEeccCCeeEc
Q 006111          504 LPN--G-------VVKIIDRKKNLIKI  521 (660)
Q Consensus       504 ~~~--G-------~l~~~GR~~d~i~~  521 (660)
                      .+.  |       .+..++|.++..++
T Consensus       339 ~~~~~g~~~d~~~~v~~~~~~~~~~~i  365 (369)
T 3hgu_A          339 LPGVSGFAGDRLADIEPLKISEGRKVI  365 (369)
T ss_dssp             ECCSTTCSSCEEEEEEECC--------
T ss_pred             ecCCCCCcCcccccceeccccCCCcee
Confidence            532  2       24556666666665

>3lax_A Phenylacetate-coenzyme A ligase; structural genomics, PSI-2, protein structure initiative, midwest center for structural genomics, MCSG; 1.43A {Bacteroides vulgatus}

Probab=99.33  E-value=2.4e-12  Score=107.96  Aligned_cols=99  Identities=11%  Similarity=-0.013  Sum_probs=65.6

Q ss_pred             eccCCeeEcCCCeeecchhHHHHHhcCcCcceEEEEecCCC---CeEEEEEEcChhhHHHHHHHCCCCCcHHHHhccHHH
Q 006111          513 DRKKNLIKISQGEYVALEYLENVYCVAPIIEDIWVYGDSLK---SMLVAVVVPCEEDTKKWAYSNGHAGSFLELCSLVQL  589 (660)
Q Consensus       513 GR~~d~i~~~~G~~v~~~~iE~~l~~~p~V~~~~V~~~~~~---~~~~a~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  589 (660)
                      .|.||||++ +|.||+|.+||++|.+||+|.+++|++.+++   +.+.++|+..++..                 .....
T Consensus         1 srADDmIiv-~G~nv~P~eIE~vl~~~p~v~~~~vv~v~~~~~~~~~~~~V~~~~~~~-----------------~~~~~   62 (109)
T 3lax_A            1 SNADDMIIL-KGVNIFPIQIETILLQFKELGSDYLITLETAESNDEMTVEVELSQLFT-----------------DDYGR   62 (109)
T ss_dssp             CGGGSCEEE-TTEEECHHHHHHHHHTCTTEEEEEEEEEEEETTEEEEEEEEEECTTCC-----------------CCHHH
T ss_pred             CCcCEEEEE-CCEEECHHHHHHHHHhCCCcccceEEEEeccccceeEEEEEEEeeccc-----------------cccch
Confidence            489999998 7999999999999999999999999886543   47888888876531                 12222


Q ss_pred             HHHHHHHHHHHHHhCCCCCceeeeEEEEecCCCCCCCCccccccccchH
Q 006111          590 QNYILSELKNAAERNKLRGFEHIKGVILDPRPFDMERDLVTATLKKKRN  638 (660)
Q Consensus       590 ~~~~~~~l~~~~~~~~l~~~~~p~~i~~~~~~~~~~~~P~t~~GKv~R~  638 (660)
                      .+.+.+.|++.++..    +.++..+.+++    .+++|+| +||++|-
T Consensus        63 ~~~l~~~i~~~l~~~----~gv~~~v~~v~----~~~lPrt-sGKi~Rv  102 (109)
T 3lax_A           63 LQALTREITRQLKDE----ILVTPRVKLVP----KGALPKS-EGKAVRV  102 (109)
T ss_dssp             HHHHHHHHHHHHHHH----HSSCCEEEEEC----TTCSCCC----CCCE
T ss_pred             hhhhHHHHHHHHHHH----hCCccceEEEc----CCeecCC-CCCcchh
Confidence            333444444443311    12233466664    3678998 7999883

>4eql_A 4-substituted benzoates-glutamate ligase GH3.12; firefly luciferase family, acyl adenylase, amino acid conjug ligase; HET: AMP SAL; 1.80A {Arabidopsis thaliana} PDB: 4epm_A* 4eq4_A* 4ewv_A*

Probab=98.69  E-value=5.9e-08  Score=104.02  Aligned_cols=156  Identities=18%  Similarity=0.181  Sum_probs=88.4

Q ss_pred             EeEEEEccCCCCHHHHHHHHHhc-CCcee-eecCCCCCCCceecccCCCccccCccCC-CccCe-eEEeeecCCCC-C--
Q 006111          385 LRLVISGGAPLSTEVEEFLRVTC-CAFLV-QGYGLTETCGPTTVCFPDEMCMVGTAGP-VSVYS-ELRLEEVPEMG-Y--  457 (660)
Q Consensus       385 lr~i~~~G~~l~~~~~~~~~~~~-~~~v~-~~YG~tE~~~~~~~~~~~~~~~~~~~G~-~~~~~-~v~ivd~~~~~-~--  457 (660)
                      +.+++.||-   ......++..+ +.+++ .+|++||+- + ..+.... ..+...+. .+++. =...++.++.. .  
T Consensus       302 l~~~~~G~~---~~Y~~~l~~~~g~~p~~~~~Y~ASEg~-~-gi~~~p~-~~~~~~~~~L~~~~~ffEFip~~~~~~~~~  375 (581)
T 4eql_A          302 IETVVTGSM---GQYVPMLNYYCNDLPLVSTTYGSSETT-F-GINLDPL-CKPEDVSYTFMPNMSYFEFIPMDGGDKNDV  375 (581)
T ss_dssp             EEEECSGGG---GGGHHHHHHHHTTCCEECCEEECSSCE-E-EECSCTT-SCGGGCCEEECTTSSEEEEEECSTTCCSSC
T ss_pred             EEEEcCCCh---HHHHHHHHHHcCCCccccCccccccce-e-eeccCCC-CCcccCceeecCCcEEEEEEeccccCCCcE
Confidence            555556662   44556666555 67777 899999953 2 2221111 11111221 12222 12333311111 1  


Q ss_pred             ---CCCCCCCCceEEEccCCcccccCCCchhhhhcccCCccccCceEEECC----CCcEEEEeccCCeeEcCCCeeecch
Q 006111          458 ---SPLDDPPCGEVCVRGKTLFSGYYKNPDLTRESIIDGWFHTGDIGQILP----NGVVKIIDRKKNLIKISQGEYVALE  530 (660)
Q Consensus       458 ---~~~~~~~~Gei~v~g~~~~~gy~~~~~~~~~~~~~g~~~TGDl~~~~~----~G~l~~~GR~~d~i~~~~G~~v~~~  530 (660)
                         ..+..|+.+||+++..+   |.|.             |++||+.+++.    ..++.|.||.+++|.+ .|+++++.
T Consensus       376 v~l~eVe~G~~YelViTt~~---GL~R-------------Yr~GD~v~v~~f~~~~p~i~f~gR~~~~l~~-~Gekl~~~  438 (581)
T 4eql_A          376 VDLEDVKLGCTYEPVVTNFA---GLYR-------------MRVGDIVLVTGFYNNAPQFKFVRRENVVLSI-DSDKTNEE  438 (581)
T ss_dssp             EEGGGCCTTCEEEEEEECSS---SCCS-------------EECCEEEEEEEEETTEEEEEEEEETTEEECS-SSCCEEHH
T ss_pred             eCHHHcCCCceEEEEEeecc---ceee-------------EEcCCEEEEcccCCCCcEEEEEEecCCEEEe-eeeECCHH
Confidence               12235678999998752   3333             99999999875    4579999999999997 79999999


Q ss_pred             hHHHHHhcCc--------CcceEEEEecC--CCCeEEEEEEcC
Q 006111          531 YLENVYCVAP--------IIEDIWVYGDS--LKSMLVAVVVPC  563 (660)
Q Consensus       531 ~iE~~l~~~p--------~V~~~~V~~~~--~~~~~~a~v~~~  563 (660)
                      +||++|.+.-        .|.|..++...  .+...+.+.+++
T Consensus       439 ~v~~al~~a~~~l~~~g~~l~eft~~~~~~~~p~Hy~~~wel~  481 (581)
T 4eql_A          439 DLFKAVSQAKLVLESSGLDLKDFTSYADTSTFPGHYVVYLEVD  481 (581)
T ss_dssp             HHHHHHHHC--------------CEEEECSSSSBEEEEECC--
T ss_pred             HHHHHHHHHHHhhhhcCCEEEEEEEecCCCCCCCeEEEEEEEe
Confidence            9999997432        24454444322  234566666554

>4b2g_A GH3-1 auxin conjugating enzyme; signaling protein, ignaling protein, adenylate, amino acid conjugation, plant growth; HET: V1N; 2.40A {Vitis vinifera}

Probab=98.58  E-value=6.8e-07  Score=95.94  Aligned_cols=156  Identities=13%  Similarity=0.102  Sum_probs=91.1

Q ss_pred             EeEEEEccCCCCHHHHHHHHHhc-CCcee-eecCCCCCCCceecccCCCccccCccCC-CccCe-eEEeeecCCC-----
Q 006111          385 LRLVISGGAPLSTEVEEFLRVTC-CAFLV-QGYGLTETCGPTTVCFPDEMCMVGTAGP-VSVYS-ELRLEEVPEM-----  455 (660)
Q Consensus       385 lr~i~~~G~~l~~~~~~~~~~~~-~~~v~-~~YG~tE~~~~~~~~~~~~~~~~~~~G~-~~~~~-~v~ivd~~~~-----  455 (660)
                      +.+++.||-   ......++..+ +.+++ .+|++||+- +.. +.... ..+...+. .+|+. =...++.++.     
T Consensus       307 l~~~~tG~~---~~Y~~~l~~~~g~~p~~~~~Y~ASEg~-~gi-~~~p~-~~p~~~~~~L~p~~~ffEFIP~~~~~~~~~  380 (609)
T 4b2g_A          307 LDVIVTGAM---AQYIPTLDYYSGGLPLACTMYASSECY-FGL-NLNPM-SKPSEVSYTIMPNMAYFEFLPHEHSSIPLS  380 (609)
T ss_dssp             EEEECSGGG---GGGHHHHHHHHTSCCEECCEEECSSCE-EEE-CSCTT-SCGGGCCEEECTTSCEEEEEEGGGTTSCCC
T ss_pred             EEEEccCCh---HHHHHHHHHHcCCCccccCccccccee-eee-ecCCC-CCcccCceeecCCcEEEEEEeccccccccc
Confidence            444555552   44456666555 67776 899999963 222 21111 01111111 12222 1223331111     


Q ss_pred             -C--C-----CCCCCCCCceEEEccCCcccccCCCchhhhhcccCCccccCceEEECC----CCcEEEEeccCCeeEcCC
Q 006111          456 -G--Y-----SPLDDPPCGEVCVRGKTLFSGYYKNPDLTRESIIDGWFHTGDIGQILP----NGVVKIIDRKKNLIKISQ  523 (660)
Q Consensus       456 -~--~-----~~~~~~~~Gei~v~g~~~~~gy~~~~~~~~~~~~~g~~~TGDl~~~~~----~G~l~~~GR~~d~i~~~~  523 (660)
                       .  .     ..+..|+.+||+|+..   .|.|.             |++||+++++.    ..++.|+||.+++|++ .
T Consensus       381 ~~~~~~~v~l~eVe~G~~YelViTt~---~GL~R-------------Yr~GD~v~v~~f~~~~p~i~~~gR~~~~l~~-~  443 (609)
T 4b2g_A          381 RDSPPRLVDLAHVEVGKEYELVITTY---AGLYR-------------YRVGDILRVTGFHNSAPQFHFVRRKNVLLSI-D  443 (609)
T ss_dssp             SSSCCCCEEGGGCCTTCEEEEEEECT---TSCCS-------------EEEEEEEEEEEEETTEEEEEEEEETTCCBCS-S
T ss_pred             cCCCCccccHhHcCCCCeEEEehhhh---hhhhh-------------eecCCEEEEeecCCCCcEEEEEEecCCeEEc-c
Confidence             0  0     1233567899999764   35554             99999999873    4689999999999997 7


Q ss_pred             CeeecchhHHHHHhcC------c--CcceEEEEecC--CCCeEEEEEEcC
Q 006111          524 GEYVALEYLENVYCVA------P--IIEDIWVYGDS--LKSMLVAVVVPC  563 (660)
Q Consensus       524 G~~v~~~~iE~~l~~~------p--~V~~~~V~~~~--~~~~~~a~v~~~  563 (660)
                      |+++++.+||++|.+.      .  .|.|..++...  .+...+.++++.
T Consensus       444 Geki~~~~v~~av~~a~~~l~~~g~~l~eft~~~d~~~~p~Hyv~~wEl~  493 (609)
T 4b2g_A          444 SDKTDEAELQKAVDNASKLLREVNTSVVEYTSFADTKTIPGHYVIYWELL  493 (609)
T ss_dssp             SCCBCHHHHHHHHHHHHHGGGGTTEEEEEEEEEEECSSSSCEEEEEEEEE
T ss_pred             ccCCCHHHHHHHHHHHHHhhhccCCeEEEEEEecCCCCCCCcEEEEEEEe
Confidence            9999999999999631      2  34565554322  234666666654

>4epl_A Jasmonic acid-amido synthetase JAR1; ANL adenylating enzyme, acyl acid-amido synthetase, adenylat ligase; HET: JAI; 2.01A {Arabidopsis thaliana}

Probab=98.41  E-value=1.7e-06  Score=92.48  Aligned_cols=159  Identities=18%  Similarity=0.105  Sum_probs=92.4

Q ss_pred             CcEeE--EEEccCCCCHHHHHHHHHhc-CCcee-eecCCCCCCCceecccCCCccccCccCC-CccCee-EEeeecCCCC
Q 006111          383 GRLRL--VISGGAPLSTEVEEFLRVTC-CAFLV-QGYGLTETCGPTTVCFPDEMCMVGTAGP-VSVYSE-LRLEEVPEMG  456 (660)
Q Consensus       383 ~~lr~--i~~~G~~l~~~~~~~~~~~~-~~~v~-~~YG~tE~~~~~~~~~~~~~~~~~~~G~-~~~~~~-v~ivd~~~~~  456 (660)
                      +++++  ++.+|..  ......++..+ +.+++ .+|++||+- +.. +.... ..++..+. .+|+.. ...++.++..
T Consensus       302 Pnl~~i~~~~~G~~--~~Y~~~l~~~~g~~p~~~~~Y~ASEg~-~gi-~~~p~-~~~~~~~~~L~p~~~ffEFiP~~~~~  376 (581)
T 4epl_A          302 PNAKYVYGIMTGSM--EPYVPKLRHYAGDLPLVSHDYGSSEGW-IAA-NVTPR-LSPEEATFAVIPNLGYFEFLPVSETG  376 (581)
T ss_dssp             TTCCCEEEECSGGG--GGGHHHHHHHHTTSCEEECCEEETTEE-EEE-CCCTT-SCTTTCCEEECTTSCEEEEEEC----
T ss_pred             CCCceEEEEeCCCh--HHHHHHHHHHcCCCccccCceecccee-eee-ecCCC-CCccccceeecCCcEEEEEEeccccc
Confidence            57763  3344432  44445666555 67777 899999963 222 21111 11111221 222221 1222211111


Q ss_pred             -----C---CCCCCCCCceEEEccCCcccccCCCchhhhhcccCCccccCceEEECC----CCcEEEEeccCCeeEcCCC
Q 006111          457 -----Y---SPLDDPPCGEVCVRGKTLFSGYYKNPDLTRESIIDGWFHTGDIGQILP----NGVVKIIDRKKNLIKISQG  524 (660)
Q Consensus       457 -----~---~~~~~~~~Gei~v~g~~~~~gy~~~~~~~~~~~~~g~~~TGDl~~~~~----~G~l~~~GR~~d~i~~~~G  524 (660)
                           .   ..+..|+.+||+++..+   |.|.             |++||+.+++.    ..++.|.||.+++|++ .|
T Consensus       377 ~~~~~~v~l~eve~G~~YelviTt~~---GL~R-------------Yr~GD~v~v~g~~~~~p~~~~~gR~~~~l~~-~G  439 (581)
T 4epl_A          377 EGEEKPVGLTQVKIGEEYEVVITNYA---GLYR-------------YRLGDVVKVIGFYNNTPQLKFICRRNLILSI-NI  439 (581)
T ss_dssp             ---CCCEEGGGCCTTCEEEEEEESTT---SCSS-------------EEEEEEEEEEEEETTEEEEEEEEETTCCBCS-SS
T ss_pred             CCCCceeeHHHcCCCCeEEEEEeecc---ceee-------------EEcCCEEEEecccCCCcEEEEEeecCCeEEe-ee
Confidence                 0   12335678999998743   3333             99999999864    2479999999999998 79


Q ss_pred             eeecchhHHHHHhc------Cc--CcceEEEEecC--CCCeEEEEEEcC
Q 006111          525 EYVALEYLENVYCV------AP--IIEDIWVYGDS--LKSMLVAVVVPC  563 (660)
Q Consensus       525 ~~v~~~~iE~~l~~------~p--~V~~~~V~~~~--~~~~~~a~v~~~  563 (660)
                      +++++.+||++|.+      ..  .|.|..++...  .+...+.+.++.
T Consensus       440 e~~~~~~v~~al~~a~~~l~~~~~~l~eft~~~d~~~~p~hyv~~wE~~  488 (581)
T 4epl_A          440 DKNTERDLQLSVESAAKRLSEEKIEVIDFSSYIDVSTDPGHYAIFWEIS  488 (581)
T ss_dssp             CCBCHHHHHHHHHHHHHHHHTTTCCEEEEEEEEECSSSSCEEEEEEEES
T ss_pred             eECCHHHHHHHHHHHHHhhcccCCeEEEEEEecCCCCCCCcEEEEEeec
Confidence            99999999999963      22  45666665532  234666666664

>3qov_A Phenylacetate-coenzyme A ligase; acetyl-COA synthetase-like, structural genomics, joint cente structural genomics, JCSG; HET: MSE ADP COA; 2.20A {Bacteroides thetaiotaomicron} PDB: 3s89_A*

Probab=87.16  E-value=2.7  Score=43.53  Aligned_cols=122  Identities=8%  Similarity=-0.044  Sum_probs=87.7

Q ss_pred             CCCceeeeccccCCCCCc--eEEeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEeCCc--hhHHHHHHHHHhCCCeEEecC
Q 006111           57 GNRMLGWRPFVDGKFGPY--VWKTYKEVYEEVLQIVSALRASGAEPGCRVGIYGANC--PQWVEAMEACNALSLICVPLY  132 (660)
Q Consensus        57 d~~a~~~~~~~d~~~~~~--~~~Ty~ql~~~v~~lA~~L~~~Gl~~gd~V~l~~~n~--~e~~~~~lA~~~~G~~~vpl~  132 (660)
                      +.++++..  ..|.+|..  ..+|.+.+...+..++..+...|+.++|++...++-+  ...+..+++++..|+.+++.+
T Consensus        86 ~~~a~i~~--TSGTTG~PK~v~~th~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~l~~G~~~~~~~  163 (436)
T 3qov_A           86 RDGVRIHS--SSGTTGNPTVIVHSQHDLDSWANLVARCLYMVGIRKTDVFQNSSGYGMFTGGLGFQYGAERLGCLTVPAA  163 (436)
T ss_dssp             HHEEEEEE--CSCSSSCCCEEEEEHHHHHHHHHHHHHHHHHTTCCTTSEEEECSCCTTCHHHHHHHHHHHHHTCEEECCC
T ss_pred             CCeEEEEE--CCCcCCCCeEEEECHHHHHHHHHHHHHHHHHcCCCCCCEEEECcccccchhHHHHHHHHHHcCCEEEeCC
Confidence            44554433  14545443  3689999999888888888888999999999888754  334556788899999988876


Q ss_pred             CCCChhHHHHHHhcccceEEEEccchhhhhhccccc-----cccCccEEEEecC
Q 006111          133 DTLGPGAVNFILDHAEIDFVFVQDKKVKELLSPDCR-----SAQRLRVMVCFTS  181 (660)
Q Consensus       133 ~~~~~~~l~~~l~~~~~~~ii~~~~~~~~~~~~~~~-----~~~~~~~i~~~~~  181 (660)
                      +. ..+.+...|+..++.+++........+.+....     ....++.++.-..
T Consensus       164 ~~-~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~~~~~~lr~i~~gGe  216 (436)
T 3qov_A          164 AG-NSKRQIKFISDFKTTALHAIPSYAIRLAEVFQEEGIDPRETTLKTLVIGAE  216 (436)
T ss_dssp             SC-CHHHHHHHHHHHTCCEEECCHHHHHHHHHHHHHTTCCTTSSSCCEEEEESS
T ss_pred             CC-CHHHHHHHHHHHCCCEEEECHHHHHHHHHHHHHcCCCcccCCccEEEEeCC
Confidence            54 678888999999999999988877666443211     1345666666543

>2y4o_A Phenylacetate-coenzyme A ligase; phenylacetic acid degradation pathway; HET: DLL; 1.90A {Burkholderia cenocepacia}

Probab=86.87  E-value=3.7  Score=42.59  Aligned_cols=106  Identities=13%  Similarity=0.086  Sum_probs=79.8

Q ss_pred             CCCCceeeeccccCCCCCce--EEeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEeCCc--hhHHHHHHHHHhCCCeEEec
Q 006111           56 PGNRMLGWRPFVDGKFGPYV--WKTYKEVYEEVLQIVSALRASGAEPGCRVGIYGANC--PQWVEAMEACNALSLICVPL  131 (660)
Q Consensus        56 pd~~a~~~~~~~d~~~~~~~--~~Ty~ql~~~v~~lA~~L~~~Gl~~gd~V~l~~~n~--~e~~~~~lA~~~~G~~~vpl  131 (660)
                      ++.++++..  ..|.+|..+  .+|.+.+...+..++..+...|+.++|++...++-+  ...+..+++++..|+.++++
T Consensus        91 ~~~~~~i~~--TSGTTG~PK~v~~t~~~~~~~~~~~~~~~~~~~~~~~d~~l~~~~~~~~~~~~~~~~~~~~~G~~~~~~  168 (443)
T 2y4o_A           91 REQVVRVHA--SSGTTGKPTVVGYTARDIDTWANVTARSIRAAGGRPGDTLHNAFGYGLFTGGLGIHYGAERLGCMVVPM  168 (443)
T ss_dssp             GGGCCEEEE--ECCSSSSCEEEEECHHHHHHHHHHHHHHHHHTTCCTTCEEEECSCCSSSHHHHHHHHHHHHHTCEEECC
T ss_pred             hhheEEEEE--CCCCCCCceEEecCHHHHHHHHHHHHHHHHHcCCCCCCEEEEeccCcccccHHHHHHHHHHcCCEEEEC
Confidence            455554433  155555543  579999988888888888788999999999888864  33345678888999999887


Q ss_pred             CCCCChhHHHHHHhcccceEEEEccchhhhhhc
Q 006111          132 YDTLGPGAVNFILDHAEIDFVFVQDKKVKELLS  164 (660)
Q Consensus       132 ~~~~~~~~l~~~l~~~~~~~ii~~~~~~~~~~~  164 (660)
                      +.. +.+.+...|+..++.+++........+.+
T Consensus       169 ~~~-~~~~~~~~i~~~~~t~l~~~Ps~~~~l~~  200 (443)
T 2y4o_A          169 SGG-QTEKQVQLIRDFEPKIILVTPSYMLNLID  200 (443)
T ss_dssp             CSC-CHHHHHHHHHHHCCSEEEECHHHHHHHHH
T ss_pred             CCC-CHHHHHHHHHHhCCcEEEECHHHHHHHHH
Confidence            654 78888899999999999988877665543

>2y27_A Phenylacetate-coenzyme A ligase; phenylacetic acid degradation pathway; HET: MSE PG4 ATP; 1.60A {Burkholderia cenocepacia} PDB: 2y4n_A*

Probab=86.68  E-value=2.6  Score=43.69  Aligned_cols=106  Identities=14%  Similarity=0.082  Sum_probs=79.8

Q ss_pred             CCCCceeeeccccCCCCCc--eEEeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEeCCc--hhHHHHHHHHHhCCCeEEec
Q 006111           56 PGNRMLGWRPFVDGKFGPY--VWKTYKEVYEEVLQIVSALRASGAEPGCRVGIYGANC--PQWVEAMEACNALSLICVPL  131 (660)
Q Consensus        56 pd~~a~~~~~~~d~~~~~~--~~~Ty~ql~~~v~~lA~~L~~~Gl~~gd~V~l~~~n~--~e~~~~~lA~~~~G~~~vpl  131 (660)
                      ++.++++..  ..|.+|..  ..+|.+.+...+..++..+...|+.++|++...++-+  ...+..+++++..|+.++++
T Consensus        89 ~~~~~~i~~--TSGTTG~PK~v~~t~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~G~~~~~~  166 (437)
T 2y27_A           89 QDRISRIHA--SSGTTGKPTVVGYTAADIDTWANLVARSIRAAGARRGDKVHVSYGYGLFTGGLGAHYGAERAGLTVIPF  166 (437)
T ss_dssp             GGGCCEEEE--CCCTTSSCCEEEECHHHHHHHHHHHHHHHHHTTCCTTCEEEECSCCSSSHHHHHHHHHHHHTTCEEECC
T ss_pred             hhHeEEEEE--CCCCCCCceEEecCHHHHHHHHHHHHHHHHHcCCCCCCEEEEcccccccccchHHHHHHHHcCCEEEeC
Confidence            455664433  14555543  3689999988888888888788999999999888863  33345678889999999887


Q ss_pred             CCCCChhHHHHHHhcccceEEEEccchhhhhhc
Q 006111          132 YDTLGPGAVNFILDHAEIDFVFVQDKKVKELLS  164 (660)
Q Consensus       132 ~~~~~~~~l~~~l~~~~~~~ii~~~~~~~~~~~  164 (660)
                      +.. +.+.+...|++.++.+++........+.+
T Consensus       167 ~~~-~~~~~~~~i~~~~~t~l~~~Ps~~~~l~~  198 (437)
T 2y27_A          167 GGG-QTEKQVQLIQDFRPDIIMVTPSYMLSIAD  198 (437)
T ss_dssp             CSC-CHHHHHHHHHHHCCSEEEECHHHHHHHHH
T ss_pred             CCC-CHHHHHHHHHHhCCCEEEECHHHHHHHHH
Confidence            654 78888999999999999998877665543

>3ipl_A 2-succinylbenzoate--COA ligase; structural genomics, acyl-protein synthetase, PSI-2, protein structure initiative; 2.30A {Staphylococcus aureus subsp}

Probab=81.88  E-value=12  Score=39.22  Aligned_cols=120  Identities=8%  Similarity=0.026  Sum_probs=83.5

Q ss_pred             CCCCCceeeeccccCCCCCc--eEEeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEeCCchhH-HHHHHHHHhCCCeEEec
Q 006111           55 YPGNRMLGWRPFVDGKFGPY--VWKTYKEVYEEVLQIVSALRASGAEPGCRVGIYGANCPQW-VEAMEACNALSLICVPL  131 (660)
Q Consensus        55 ~pd~~a~~~~~~~d~~~~~~--~~~Ty~ql~~~v~~lA~~L~~~Gl~~gd~V~l~~~n~~e~-~~~~lA~~~~G~~~vpl  131 (660)
                      .|+.+|++..  ..|.+|..  ..+|.+.+...+..+..   ..++.++|++...+|-.-.+ +..+++++..|+.++..
T Consensus       161 ~~~d~a~i~~--TSGTTG~PKgv~~th~~~~~~~~~~~~---~~~~~~~d~~l~~~p~~~~~g~~~~~~~l~~G~~~~~~  235 (501)
T 3ipl_A          161 NLDDIASIMF--TSGTTGPQKAVPQTFRNHYASAIGCKE---SLGFDRDTNWLSVLPIYHISGLSVLLRAVIEGFTVRIV  235 (501)
T ss_dssp             CTTSEEEEEE--CCTTTSCCCEEEEEHHHHHHHHHHHHH---HTCCCTTCEEEECSCTTSHHHHHHHHHHHHHTCEEEEC
T ss_pred             CCCCeEEEEE--CCCCCCCCcEEEEeHHHHHHHHHHHHH---hhCCCccCEEEEeCcHHHHHHHHHHHHHHHcCceEEeC
Confidence            4667776554  14544443  36798888776665543   45889999999888876433 33467888899998887


Q ss_pred             CCCCChhHHHHHHhcccceEEEEccchhhhhhccccccccCccEEEEec
Q 006111          132 YDTLGPGAVNFILDHAEIDFVFVQDKKVKELLSPDCRSAQRLRVMVCFT  180 (660)
Q Consensus       132 ~~~~~~~~l~~~l~~~~~~~ii~~~~~~~~~~~~~~~~~~~~~~i~~~~  180 (660)
                      + ..+.+.+...++..++.+++........+..........++.++.-.
T Consensus       236 ~-~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~lr~i~~gG  283 (501)
T 3ipl_A          236 D-KFNAEQILTMIKNERITHISLVPQTLNWLMQQGLHEPYNLQKILLGG  283 (501)
T ss_dssp             S-SCCHHHHHHHHHHSCCCEEEECHHHHHHHHHHTCCSCTTCCEEEECS
T ss_pred             C-CCCHHHHHHHHHHcCCcEEEchHHHHHHHHhcCCCCcCcccEEEEeC
Confidence            5 46788999999999999999998877766554433333555555544

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	660
d1pg4a_	643	e.23.1.1 (A:) Acetyl-CoA synthetase {Salmonella en	1e-67
d1v25a_	534	e.23.1.1 (A:) Long chain fatty acid-CoA ligase TT0	4e-62
d1ry2a_	640	e.23.1.1 (A:) Acetyl-CoA synthetase {Baker's yeast	4e-56
d1lcia_	541	e.23.1.1 (A:) Luciferase {Firefly (Photinus pyrali	2e-48
d3cw9a1	503	e.23.1.1 (A:1-503) 4-chlorobenzoyl CoA ligase {Alc	6e-42
d1amua_	514	e.23.1.1 (A:) Phenylalanine activating domain of g	2e-40
d1mdba_	536	e.23.1.1 (A:) Dihydroxybenzoate-AMP ligase DhbE {B	5e-34

>d1pg4a_ e.23.1.1 (A:) Acetyl-CoA synthetase {Salmonella enterica [TaxId: 28901]} Length = 643

class: Multi-domain proteins (alpha and beta)
fold: Acetyl-CoA synthetase-like
superfamily: Acetyl-CoA synthetase-like
family: Acetyl-CoA synthetase-like
domain: Acetyl-CoA synthetase
species: Salmonella enterica [TaxId: 28901]

 Score =  231 bits (589), Expect = 1e-67
 Identities = 89/554 (16%), Positives = 174/554 (31%), Gaps = 77/554 (13%)

Query: 37  VDSDLNTAWDIFSMSVQKYPGNRMLGWRPFVDGKFGPYVWKTYKEVYEEVLQIVSALRAS 96
            D  LN A +     +Q+      + W      +       +Y+E++ +V +  + L   
Sbjct: 67  EDGTLNLAANCLDRHLQENGDRTAIIWEGDDTSQSKHI---SYRELHRDVCRFANTLLDL 123

Query: 97  GAEPGCRVGIYGANCPQWVEAMEACNALSLICVPLYDTLGPGAVNFILDHAEIDFVFVQD 156
           G + G  V IY    P+   AM AC  +  +   ++    P AV   +  +    V   D
Sbjct: 124 GIKKGDVVAIYMPMVPEAAVAMLACARIGAVHSVIFGGFSPEAVAGCIIDSSSRLVITAD 183

Query: 157 KKVKELLSPDCRSA-----QRLRVMVCFTSLTAEQKEMAVQTGIKPYSWDEFLHLGKVNE 211
           + V+   S   +       +   V      +  ++    +        W   L      E
Sbjct: 184 EGVRAGRSIPLKKNVDDALKNPNVTSVEHVIVLKRTGSDIDWQEGRDLWWRDLIEKASPE 243

Query: 212 MEILPPQPFNICTIMYTSGTSGDPKGVVLTHETIATFVSGVDLFLDQFEDKMTVDDVYLS 271
            +       +   I+YTSG++G PKGV+ T      + +    ++  +       D+Y  
Sbjct: 244 HQPEAMNAEDPLFILYTSGSTGKPKGVLHTTGGYLVYAATTFKYVFDY----HPGDIYWC 299

Query: 272 FLPLAHILDRVIEEYF-FRRGASVGYYHG-----DLNALRDDLMELKPTLLAGVPRVFEK 325
              +  +       Y     GA+   + G         +   + + +  +L   P     
Sbjct: 300 TADVGWVTGHSYLLYGPLACGATTLMFEGVPNWPTPARMCQVVDKHQVNILYTAPTAIR- 358

Query: 326 IHEGIKKALEELRPLRRRIFDALYKYKLAWMNMGYKQREASPLADLLAFRKVKARLGGRL 385
                                       A M  G K  E +  +               L
Sbjct: 359 ----------------------------ALMAEGDKAIEGTDRS--------------SL 376

Query: 386 RLVISGGAPLSTEV-EEFLRVTC--CAFLVQGYGLTETCGPTTVCFPDEMCM-VGTAGPV 441
           R++ S G P++ E  E + +        +V  +  TET G      P  + +  G+A   
Sbjct: 377 RILGSVGEPINPEAWEWYWKKIGKEKCPVVDTWWQTETGGFMITPLPGAIELKAGSATRP 436

Query: 442 SVYSELRLEEVPEMGYSPLDDPPCGEVCVRG--KTLFSGYYKNPDLTRESII---DGWFH 496
               +  L  V   G  P +    G + +           + + +   ++        + 
Sbjct: 437 FFGVQPAL--VDNEG-HPQEGATEGNLVITDSWPGQARTLFGDHERFEQTYFSTFKNMYF 493

Query: 497 TGDIGQILPNGVVKIIDRKKNLIKISQGEYVALEYLENVYCVAPIIEDIWVYG---DSLK 553
           +GD  +   +G   I  R  +++ +S G  +    +E+     P I +  V G       
Sbjct: 494 SGDGARRDEDGYYWITGRVDDVLNVS-GHRLGTAEIESALVAHPKIAEAAVVGIPHAIKG 552

Query: 554 SMLVAVVVPCEEDT 567
             + A V     + 
Sbjct: 553 QAIYAYVTLNHGEE 566

>d1v25a_ e.23.1.1 (A:) Long chain fatty acid-CoA ligase TT0168 {Thermus thermophilus [TaxId: 274]} Length = 534

class: Multi-domain proteins (alpha and beta)
fold: Acetyl-CoA synthetase-like
superfamily: Acetyl-CoA synthetase-like
family: Acetyl-CoA synthetase-like
domain: Long chain fatty acid-CoA ligase TT0168
species: Thermus thermophilus [TaxId: 274]

 Score =  213 bits (543), Expect = 4e-62
 Identities = 126/553 (22%), Positives = 194/553 (35%), Gaps = 90/553 (16%)

Query: 33  GFPSV--DSDLNTAWDIFSMSVQKYPGNRMLGWRPFVDGKFGPYVWKTYKEVYEEVLQIV 90
            FPS   D +LN  WD    +   +    ++          G     TY EVY+   +++
Sbjct: 1   AFPSTMMDEELNL-WDFLERAAALFGRKEVV-----SRLHTGEVHRTTYAEVYQRARRLM 54

Query: 91  SALRASGAEPGCRVGIYGANCPQWVEAMEACNALSLICVPLYDTLGPGAVNFILDHAEID 150
             LRA G   G RV   G N  + +EA  A   +  +       L P  + +IL+HAE D
Sbjct: 55  GGLRALGVGVGDRVATLGFNHFRHLEAYFAVPGMGAVLHTANPRLSPKEIAYILNHAE-D 113

Query: 151 FVFVQDKKVKELLSPDCRSAQRLRVMVCFTSLTAEQKEMAVQTGIKPYSWDEFLHLGKVN 210
            V + D  +  L+       + ++  V       E                         
Sbjct: 114 KVLLFDPNLLPLVEAIRGELKTVQHFVVMDEKAPE--------------GYLAYEEALGE 159

Query: 211 EMEILPPQPFNICTIMYTSGTSGDPKGVVLTHETIATFVSGVDLFLDQFEDKMTVDDVYL 270
           E + +       C + YT+GT+G PKGVV +H  +                 ++  DV L
Sbjct: 160 EADPVRVPERAACGMAYTTGTTGLPKGVVYSHRALVLHSLAAS---LVDGTALSEKDVVL 216

Query: 271 SFLPLAHILDRVIEEYFFRRGASVGYY--HGDLNALRDDLMELKPTLLAGVPRVFEKIHE 328
             +P+ H+    +       GA         D  +L +       T  AGVP V+     
Sbjct: 217 PVVPMFHVNAWCLPYAATLVGAKQVLPGPRLDPASLVELFDGEGVTFTAGVPTVW----- 271

Query: 329 GIKKALEELRPLRRRIFDALYKYKLAWMNMGYKQREASPLADLLAFRKVKARLGGRLRLV 388
                                                     L  + +        LR +
Sbjct: 272 ----------------------------------------LALADYLESTGHRLKTLRRL 291

Query: 389 ISGGAPLSTEVEEFLRVTCCAFLVQGYGLTETCGPTTVCFP----------DEMCMVGTA 438
           + GG+     +           + QGYGLTET       F           +++ +    
Sbjct: 292 VVGGSAAPRSLIARFERMGVE-VRQGYGLTETSPVVVQNFVKSHLESLSEEEKLTLKAKT 350

Query: 439 GPVSVYSELRLEEVPEMGYSPLDDPPCGEVCVRGKTLFSGYYKNPDLTRESII-DGWFHT 497
           G       LR+ +  E    P D    GEV ++G  +  GYY N + TR ++  DG+F T
Sbjct: 351 GLPIPLVRLRVAD-EEGRPVPKDGKALGEVQLKGPWITGGYYGNEEATRSALTPDGFFRT 409

Query: 498 GDIGQILPNGVVKIIDRKKNLIKISQGEYVALEYLENVYCVAPIIEDIWVYG---DSLKS 554
           GDI      G V+I DR K+LIK   GE+++   LEN     P +++  V        + 
Sbjct: 410 GDIAVWDEEGYVEIKDRLKDLIKSG-GEWISSVDLENALMGHPKVKEAAVVAIPHPKWQE 468

Query: 555 MLVAVVVPCEEDT 567
             +AVVVP  E  
Sbjct: 469 RPLAVVVPRGEKP 481

>d1ry2a_ e.23.1.1 (A:) Acetyl-CoA synthetase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 640

class: Multi-domain proteins (alpha and beta)
fold: Acetyl-CoA synthetase-like
superfamily: Acetyl-CoA synthetase-like
family: Acetyl-CoA synthetase-like
domain: Acetyl-CoA synthetase
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score =  199 bits (507), Expect = 4e-56
 Identities = 93/559 (16%), Positives = 182/559 (32%), Gaps = 84/559 (15%)

Query: 37  VDSDLNTAWDIFSMSVQKYPGNRMLGWRPFVDGKFGPYVWKTYKEVYEEVLQIVSALRAS 96
           ++  LN  ++       K P  + + +     G+       TYKE+ EEV Q+   L  S
Sbjct: 54  LNGQLNACYNCVDRHALKTPNKKAIIFEGDEPGQGYSI---TYKELLEEVCQVAQVLTYS 110

Query: 97  -GAEPGCRVGIYGANCPQWVEAMEACNALSLICVPLYDTLGPGAVNFILDHAEIDFVFVQ 155
            G   G  V +Y    P+ +  + A + +  I   ++      ++   ++  +   V   
Sbjct: 111 MGVRKGDTVAVYMPMVPEAIITLLAISRIGAIHSVVFAGFSSNSLRDRINDGDSKVVITT 170

Query: 156 DK--------KVKELLSPDCRSAQRLRVMVCFTSLTAEQKEMAVQTGIKPYSWDEFLHLG 207
           D+        + K ++    R    +R ++ +     +    +V                
Sbjct: 171 DESNRGGKVIETKRIVDDALRETPGVRHVLVYR----KTNNPSVAFHAPRDLDWATEKKK 226

Query: 208 KVNEMEILPPQPFNICTIMYTSGTSGDPKGVVLTHETIATFVSGVDLFLDQFEDKMTVDD 267
                   P    +   ++YTSG++G PKGV  +            L   ++      +D
Sbjct: 227 YKTYYPCTPVDSEDPLFLLYTSGSTGAPKGVQHSTAGYLLGA----LLTMRYTFDTHQED 282

Query: 268 VYLSFLPLAHILDRVIEEYF-FRRGASVGYYHG-----DLNALRDDLMELKPTLLAGVPR 321
           V+ +   +  I       Y     G +   + G     + +   D + E K T     P 
Sbjct: 283 VFFTAGDIGWITGHTYVVYGPLLYGCATLVFEGTPAYPNYSRYWDIIDEHKVTQFYVAPT 342

Query: 322 VFEKIHEGIKKALEELRPLRRRIFDALYKYKLAWMNMGYKQREASPLADLLAFRKVKARL 381
                           R L+R     +  + L                            
Sbjct: 343 AL--------------RLLKRAGDSYIENHSLK--------------------------- 361

Query: 382 GGRLRLVISGGAPLSTEVEEFLR---VTCCAFLVQGYGLTETCGPTTVCFPDEMCMV--G 436
              LR + S G P++ EV E+           +V  Y  TE+           +  +  G
Sbjct: 362 --SLRCLGSVGEPIAAEVWEWYSEKIGKNEIPIVDTYWQTESGSHLVTPLAGGVTPMKPG 419

Query: 437 TAGPVSVYSELRLEEVPEMGYSPLDDPPCGEVCVRG--KTLFSGYYKNPDLTRESII--- 491
           +A       +  + + P  G         G + V+    +     +KN D   ++ +   
Sbjct: 420 SASFPFFGIDAVVLD-PNTGEELNTSHAEGVLAVKAAWPSFARTIWKNHDRYLDTYLNPY 478

Query: 492 DGWFHTGDIGQILPNGVVKIIDRKKNLIKISQGEYVALEYLENVYCVAPIIEDIWVYG-- 549
            G++ TGD      +G + I+ R  +++ +S G  ++   +E      PI+ +  V G  
Sbjct: 479 PGYYFTGDGAAKDKDGYIWILGRVDDVVNVS-GHRLSTAEIEAAIIEDPIVAECAVVGFN 537

Query: 550 -DSLKSMLVAVVVPCEEDT 567
            D     + A VV   + +
Sbjct: 538 DDLTGQAVAAFVVLKNKSS 556

>d1lcia_ e.23.1.1 (A:) Luciferase {Firefly (Photinus pyralis) [TaxId: 7054]} Length = 541

class: Multi-domain proteins (alpha and beta)
fold: Acetyl-CoA synthetase-like
superfamily: Acetyl-CoA synthetase-like
family: Acetyl-CoA synthetase-like
domain: Luciferase
species: Firefly (Photinus pyralis) [TaxId: 7054]

 Score =  176 bits (446), Expect = 2e-48
 Identities = 120/535 (22%), Positives = 195/535 (36%), Gaps = 73/535 (13%)

Query: 43  TAWDIFSMSVQKYPGNRMLGWRP----FVDGKFGPYVWKTYKEVYEEVLQIVSALRASGA 98
           TA +    ++++Y         P    F D      +  TY E +E  +++  A++  G 
Sbjct: 18  TAGEQLHKAMKRYAL------VPGTIAFTDAHIEVNI--TYAEYFEMSVRLAEAMKRYGL 69

Query: 99  EPGCRVGIYGANCPQWVEAMEACNALSLICVPLYDTLGPGAVNFILDHAEIDFVFVQDKK 158
               R+ +   N  Q+   +     + +   P  D      +   ++ ++   VFV  K 
Sbjct: 70  NTNHRIVVCSENSLQFFMPVLGALFIGVAVAPANDIYNERELLNSMNISQPTVVFVSKKG 129

Query: 159 VKELLSPDCRSAQRLRVMVCFTSLTAEQKEMAVQTGIKPYSWDEFLHLGKVNEMEILPPQ 218
           ++++L+      ++L ++     + ++      Q+     +        + + +     +
Sbjct: 130 LQKILN----VQKKLPIIQKIIIMDSKTDYQGFQSMYTFVTSHLPPGFNEYDFVPESFDR 185

Query: 219 PFNICTIMYTSGTSGDPKGVVLTHETIATFVSGVDLFLDQFEDKMTVDDVYLSFLPLAHI 278
              I  IM +SG++G PKGV L H T     S     +  F +++  D   LS +P  H 
Sbjct: 186 DKTIALIMNSSGSTGLPKGVALPHRTACVRFSHARDPI--FGNQIIPDTAILSVVPFHHG 243

Query: 279 LDRVIEEYFFRRGAS-VGYYHGDLNALRDDLMELKPTLLAGVPRVFEKIHEGIKKALEEL 337
                   +   G   V  Y  +       L + K      VP +F              
Sbjct: 244 FGMFTTLGYLICGFRVVLMYRFEEELFLRSLQDYKIQSALLVPTLFS------------- 290

Query: 338 RPLRRRIFDALYKYKLAWMNMGYKQREASPLADLLAFRKVKARLGGRLRLVISGGAPLST 397
                       K  L                               L  + SGGAPLS 
Sbjct: 291 ---------FFAKSTLIDKYDL-----------------------SNLHEIASGGAPLSK 318

Query: 398 E-VEEFLRVTCCAFLVQGYGLTETCGPTTVCFPDEMCMVGTAGPVSVYSELRLEEVPEMG 456
           E  E   +      + QGYGLTET     +  P+     G  G V  + E ++ ++    
Sbjct: 319 EVGEAVAKRFHLPGIRQGYGLTETTSAILIT-PEGDDKPGAVGKVVPFFEAKVVDLDTGK 377

Query: 457 YSPLDDPPCGEVCVRGKTLFSGYYKNPDLTRESII-DGWFHTGDIGQILPNGVVKIIDRK 515
              ++    GE+CVRG  + SGY  NP+ T   I  DGW H+GDI     +    I+DR 
Sbjct: 378 TLGVNQR--GELCVRGPMIMSGYVNNPEATNALIDKDGWLHSGDIAYWDEDEHFFIVDRL 435

Query: 516 KNLIKISQGEYVALEYLENVYCVAPIIEDIWVYG---DSLKSMLVAVVVPCEEDT 567
           K+LIK   G  VA   LE++    P I D  V G   D    +  AVVV     T
Sbjct: 436 KSLIKYK-GYQVAPAELESILLQHPNIFDAGVAGLPDDDAGELPAAVVVLEHGKT 489

>d3cw9a1 e.23.1.1 (A:1-503) 4-chlorobenzoyl CoA ligase {Alcaligenes sp. [TaxId: 512]} Length = 503

class: Multi-domain proteins (alpha and beta)
fold: Acetyl-CoA synthetase-like
superfamily: Acetyl-CoA synthetase-like
family: Acetyl-CoA synthetase-like
domain: 4-chlorobenzoyl CoA ligase
species: Alcaligenes sp. [TaxId: 512]

 Score =  157 bits (396), Expect = 6e-42
 Identities = 91/530 (17%), Positives = 153/530 (28%), Gaps = 78/530 (14%)

Query: 41  LNTAWDIFSMSVQKYPGNRMLGWRPFVDGKFGPYVWKTYKEVYEEVLQIVSALRASGAEP 100
           + T  ++   +  + P          +          T+ E+   V  + + L A G  P
Sbjct: 1   MQTVNEMLRRAATRAPD------HCALAVPARGLRL-THAELRARVEAVAARLHADGLRP 53

Query: 101 GCRVGIYGANCPQWVEAMEACNALSLICVPLYDTLGPGAVNFILDHAEIDFVFVQDKKVK 160
             RV +   N    V A+ A + L  +   L   L    +  ++   E+    +   +  
Sbjct: 54  QQRVAVVAPNSADVVIAILALHRLGAVPALLNPRLKSAELAELIKRGEMTAAVIAVGRQV 113

Query: 161 ELLSPDCRSAQRLRVMVCFTSLTAEQKEMAVQTGIKPYSWDEFLHLGKVNEMEILPPQPF 220
                   S  R+  +                    PYS+           +E    +P 
Sbjct: 114 ADAIFQSGSGARIIFLGDLVRDGE------------PYSYGP--------PIEDPQREPA 153

Query: 221 NICTIMYTSGTSGDPKGVVLTHETIATFVSGVDLFLDQFEDKMTVDDVYLSFLPLAHILD 280
               I YTSGT+G PK             S V     Q   +    +V L  +PL H++ 
Sbjct: 154 QPAFIFYTSGTTGLPKAA---IIPQRAAESRVLFMSTQVGLRHGRHNVVLGLMPLYHVVG 210

Query: 281 RVIEEYFFRRGASVGYYHGDLNALRDDLMELKPTLLAGVPRVFEKIHEGIKKALEELRPL 340
                              +                                        
Sbjct: 211 FFAVLVAALALDGTYVVVEEFRP------------------------------------- 233

Query: 341 RRRIFDALYKYKLAWMNMGYKQREASPLADLLAFRKVKARLGGRLRLVISGGAPLSTEVE 400
                  + + ++  +       +A   A   A   +K      LR V   GA +   V 
Sbjct: 234 -VDALQLVQQEQVTSLFATPTHLDALAAAAAHAGSSLK---LDSLRHVTFAGATMPDAVL 289

Query: 401 EFLRVTCCAFLVQGYGLTETCGPTTVCFPDEMCMVGTAGPVSVYSELRLEEVPEMGYSPL 460
           E +        V  YG TE      +  P     +       V     +     +     
Sbjct: 290 ETVHQHLPGEKVNIYGTTEAMNSLYMRQPKTGTEMAPGFFSEVR---IVRIGGGVDEIVA 346

Query: 461 DDPPCGEVCVRGKTLFSGYYKNPDLTRESIIDGWFHTGDIGQILPNGVVKIIDRKKNLIK 520
           +      +     + F GY   P  T E + DGW+ T D+    P G V+I+ R  ++I 
Sbjct: 347 NGEEGELIVAASDSAFVGYLNQPQATAEKLQDGWYRTSDVAVWTPEGTVRILGRVDDMII 406

Query: 521 ISQGEYVALEYLENVYCVAPIIEDIWVYG---DSLKSMLVAVVVPCEEDT 567
              GE +    +E V   AP + ++ V G         + A VVP   +T
Sbjct: 407 S-GGENIHPSEIERVLGTAPGVTEVVVIGLADQRWGQSVTACVVPRLGET 455

>d1amua_ e.23.1.1 (A:) Phenylalanine activating domain of gramicidin synthetase 1 {Bacillus brevis [TaxId: 1393]} Length = 514

class: Multi-domain proteins (alpha and beta)
fold: Acetyl-CoA synthetase-like
superfamily: Acetyl-CoA synthetase-like
family: Acetyl-CoA synthetase-like
domain: Phenylalanine activating domain of gramicidin synthetase 1
species: Bacillus brevis [TaxId: 1393]

 Score =  153 bits (386), Expect = 2e-40
 Identities = 85/535 (15%), Positives = 166/535 (31%), Gaps = 101/535 (18%)

Query: 43  TAWDIFSMSVQKYPGNRMLGWRPFVDGKFGPYVWKTYKEVYEEVLQIVSALRASGAEPGC 102
           T   +F   V K P N  +      + +       TY E+  +  Q+       G     
Sbjct: 24  TIHQLFEEQVSKRPNNVAIVCE---NEQL------TYHELNVKANQLARIFIEKGIGKDT 74

Query: 103 RVGIYGANCPQWVEAMEACNALSLICVPLYDTLGPGAVNFILDHAEIDFVFVQDKKVKEL 162
            VGI           + A        VP+        + +ILD ++   +  Q   V  +
Sbjct: 75  LVGIMMEKSIDLFIGILAVLKAGGAYVPIDIEYPKERIQYILDDSQARMLLTQKHLVHLI 134

Query: 163 LSPDCRSAQRLRVMVCFTSLTAEQKEMAVQTGIKPYSWDEFLHLGKVNEMEILPPQPFNI 222
                                       +Q   +   ++E     +      +P +  ++
Sbjct: 135 --------------------------HNIQFNGQVEIFEEDTIKIREGTNLHVPSKSTDL 168

Query: 223 CTIMYTSGTSGDPKGVVLTHETIATFVSGVDLFLDQFEDKMTVDDVYLSFLPLAHILDRV 282
             ++YTSGT+G+PKG +L H+ I+           +    +T  D    F  ++      
Sbjct: 169 AYVIYTSGTTGNPKGTMLEHKGISNLK-----VFFENSLNVTEKDRIGQFASISFDASVW 223

Query: 283 IEEYFFRRGASVGYYHGDLNALRDDLMELKPTLLAGVPRVFEKIHEGIKKALEELRPLRR 342
                   GAS+                                        ++      
Sbjct: 224 EMFMALLTGASLYIIL------------------------------------KDTINDFV 247

Query: 343 RIFDALYKYKLAWMNMGYKQREASPLADLLAFRKVKARLGGRLRLVISGGAPLSTEVEEF 402
           +    + + ++  + +            +L+ +            +I+ G+  S  +   
Sbjct: 248 KFEQYINQKEITVITLPPTYVVHLDPERILSIQT-----------LITAGSATSPSLVNK 296

Query: 403 LRVTCCAFLVQGYGLTETCGPTTVCFPDEMCMVGTAGPVSVYSELRLEEVPEMGYSPLDD 462
            +       +  YG TET    T     +  +  +    +     ++  V E        
Sbjct: 297 WKEKVT--YINAYGPTETTICATTWVATKETIGHSVPIGAPIQNTQIYIVDENL-QLKSV 353

Query: 463 PPCGEVCVRGKTLFSGYYKNPDLTRESII-------DGWFHTGDIGQILPNGVVKIIDRK 515
              GE+C+ G+ L  GY+K P+LT +  +       +  + TGD  + L +G ++ + R 
Sbjct: 354 GEAGELCIGGEGLARGYWKRPELTSQKFVDNPFVPGEKLYKTGDQARWLSDGNIEYLGRI 413

Query: 516 KNLIKISQGEYVALEYLENVYCVAPIIEDIWVYG---DSLKSMLVAVVVPCEEDT 567
            N +KI  G  V LE +E++      I +  V        +  L A  V  +   
Sbjct: 414 DNQVKIR-GHRVELEEVESILLKHMYISETAVSVHKDHQEQPYLCAYFVSEKHIP 467

>d1mdba_ e.23.1.1 (A:) Dihydroxybenzoate-AMP ligase DhbE {Bacillus subtilis [TaxId: 1423]} Length = 536

class: Multi-domain proteins (alpha and beta)
fold: Acetyl-CoA synthetase-like
superfamily: Acetyl-CoA synthetase-like
family: Acetyl-CoA synthetase-like
domain: Dihydroxybenzoate-AMP ligase DhbE
species: Bacillus subtilis [TaxId: 1423]

 Score =  134 bits (337), Expect = 5e-34
 Identities = 90/533 (16%), Positives = 165/533 (30%), Gaps = 81/533 (15%)

Query: 43  TAWDIFSMSVQKYPGNRMLGWRPFVDGKFGPYVWKTYKEVYEEVLQIVSALRASGAEPGC 102
           T  D+      KY        R  +    G   W +Y+E+     ++ +  +  G +   
Sbjct: 26  TFGDLLRDRAAKYGD------RIAIT--CGNTHW-SYRELDTRADRLAAGFQKLGIQQKD 76

Query: 103 RVGIYGANCPQWVEAMEACNALSLICVPLYDTLGPGAVNFILDHAEIDFVFVQDKKVKEL 162
           RV +   N  ++ E + A   L  + V    +     + +  + AE     + D      
Sbjct: 77  RVVVQLPNIKEFFEVIFALFRLGALPVFALPSHRSSEITYFCEFAEAAAYIIPDAYSGFD 136

Query: 163 LSPDCRSAQRLRVMVCFTSLTAEQKEMAVQTGIKPYSWDEFLHLGKVNEMEILPPQ--PF 220
                R  Q               K   ++  I     +EFL L  ++   +  P+    
Sbjct: 137 YRSLARQVQ--------------SKLPTLKNIIVAGEAEEFLPLEDLHTEPVKLPEVKSS 182

Query: 221 NICTIMYTSGTSGDPKGVVLTHETIATFVSGVDLFLDQFEDKMTVDDVYLSFLPLAHILD 280
           ++  +  + G++G  K +  TH+     +             +    +    +   + L 
Sbjct: 183 DVAFLQLSGGSTGLSKLIPRTHDDYIYSLKRSVEVCWLDHSTV---YLAALPMAHNYPLS 239

Query: 281 RVIEEYFFRRGASVGYYHGDLNALRDDLMELKPTLLAGVPRVFEKIHEGIKKALEELRPL 340
                     G  V                                            P 
Sbjct: 240 SPGVLGVLYAGGRVVLSP---------------------------------------SPS 260

Query: 341 RRRIFDALYKYKLAWMNMGYKQREASPLADLLAFRKVKARLGGRLRLVISGGAPLSTEVE 400
               F  + + K+    +             +     +      L+++  GGA  S E  
Sbjct: 261 PDDAFPLIEREKVTITALVPPL-----AMVWMDAASSRRDDLSSLQVLQVGGAKFSAEAA 315

Query: 401 EFLRVTCCAFLVQGYGLTETCGPTTVCFPDEMCMVGTAG-PVSVYSELRLEEVPEMGYSP 459
             ++      L Q +G+ E     T     E  +V T G P+S Y E R+    +     
Sbjct: 316 RRVKAVFGCTLQQVFGMAEGLVNYTRLDDPEEIIVNTQGKPMSPYDESRV--WDDHD-RD 372

Query: 460 LDDPPCGEVCVRGKTLFSGYYKNPDLTRESIID-GWFHTGDIGQILPNGVVKIIDRKKNL 518
           +     G +  RG     GYYK  +    S  + G++ TGDI ++  +G + +  R K+ 
Sbjct: 373 VKPGETGHLLTRGPYTIRGYYKAEEHNAASFTEDGFYRTGDIVRLTRDGYIVVEGRAKDQ 432

Query: 519 IKISQGEYVALEYLENVYCVAPIIEDIWVYG---DSLKSMLVAVVVPCEEDTK 568
           I    GE VA E +EN     P + D  +       L       ++P +E  K
Sbjct: 433 INRG-GEKVAAEEVENHLLAHPAVHDAAMVSMPDQFLGERSCVFIIPRDEAPK 484

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	660
d1pg4a_	643	Acetyl-CoA synthetase {Salmonella enterica [TaxId:	100.0
d1ry2a_	640	Acetyl-CoA synthetase {Baker's yeast (Saccharomyce	100.0
d1v25a_	534	Long chain fatty acid-CoA ligase TT0168 {Thermus t	100.0
d1lcia_	541	Luciferase {Firefly (Photinus pyralis) [TaxId: 705	100.0
d1amua_	514	Phenylalanine activating domain of gramicidin synt	100.0
d1mdba_	536	Dihydroxybenzoate-AMP ligase DhbE {Bacillus subtil	100.0
d3cw9a1	503	4-chlorobenzoyl CoA ligase {Alcaligenes sp. [TaxId	100.0

>d1pg4a_ e.23.1.1 (A:) Acetyl-CoA synthetase {Salmonella enterica [TaxId: 28901]}

class: Multi-domain proteins (alpha and beta)
fold: Acetyl-CoA synthetase-like
superfamily: Acetyl-CoA synthetase-like
family: Acetyl-CoA synthetase-like
domain: Acetyl-CoA synthetase
species: Salmonella enterica [TaxId: 28901]

Probab=100.00  E-value=2e-73  Score=635.95  Aligned_cols=526  Identities=15%  Similarity=0.168  Sum_probs=418.5

Q ss_pred             CCCCCCCcH-HHHHHHHHHhCCCCCceeeeccccCCCCCceEEeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEeCCchhH
Q 006111           36 SVDSDLNTA-WDIFSMSVQKYPGNRMLGWRPFVDGKFGPYVWKTYKEVYEEVLQIVSALRASGAEPGCRVGIYGANCPQW  114 (660)
Q Consensus        36 ~~~~~~~ti-~~~l~~~a~~~pd~~a~~~~~~~d~~~~~~~~~Ty~ql~~~v~~lA~~L~~~Gl~~gd~V~l~~~n~~e~  114 (660)
                      |.+...-|+ .++|+++++.+||++|+++.   ...+++.+++||+||.++++++|++|++.|+++||+|+++++|++++
T Consensus        65 wf~~~~~N~~~n~ldrh~~~~~d~~Ali~~---~~~~~~~~~~TY~eL~~~v~~~A~~L~~~Gv~~Gd~V~i~~~n~~e~  141 (643)
T d1pg4a_          65 WYEDGTLNLAANCLDRHLQENGDRTAIIWE---GDDTSQSKHISYRELHRDVCRFANTLLDLGIKKGDVVAIYMPMVPEA  141 (643)
T ss_dssp             ESTTCEECHHHHHTGGGHHHHTTSEEEEEE---CSSTTCEEEEEHHHHHHHHHHHHHHHHHHTCCTTCEEEEECCSSHHH
T ss_pred             eCCCChhhHHHHHHHHHHHhCCCCEEEEEE---ecCCCCceEEeHHHHHHHHHHHHHHHHHcCCCCCCEEEEecccchHH
Confidence            455554444 56777888999999999987   44556668999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHhCCCeEEecCCCCChhHHHHHHhcccceEEEEccchhhhhh---------ccc-cccccCccEEEEecCCcH
Q 006111          115 VEAMEACNALSLICVPLYDTLGPGAVNFILDHAEIDFVFVQDKKVKELL---------SPD-CRSAQRLRVMVCFTSLTA  184 (660)
Q Consensus       115 ~~~~lA~~~~G~~~vpl~~~~~~~~l~~~l~~~~~~~ii~~~~~~~~~~---------~~~-~~~~~~~~~i~~~~~~~~  184 (660)
                      ++++|||+++|++++|+++.++.+++..++++++++++|+++.......         ... ......+..++.+.....
T Consensus       142 iv~~lA~~~~Gav~v~l~~~~~~~~l~~~l~~~~~~~li~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~i~~~~~~~  221 (643)
T d1pg4a_         142 AVAMLACARIGAVHSVIFGGFSPEAVAGCIIDSSSRLVITADEGVRAGRSIPLKKNVDDALKNPNVTSVEHVIVLKRTGS  221 (643)
T ss_dssp             HHHHHHHHHHTCEEEECCTTSCHHHHHHHHHHHTCSEEEEESEEEETTEEEESHHHHHHHHTSTTCCSCCEEEEECSSCC
T ss_pred             HHHHHHHHHhCeEEEecCCCCCHHHHHHHHHhcCCCEEEEcchhhhhccccchhhhHHHHHhccccccceEEEEeccCCc
Confidence            9999999999999999999999999999999999999999875332111         111 112345556666654321


Q ss_pred             HHHHHHhhCCcceeeHHHHHhcCccCCccCCCCCCCceEEEEecCCCCCCCceeeecchhHHHHhhh-hhhhcccccCCC
Q 006111          185 EQKEMAVQTGIKPYSWDEFLHLGKVNEMEILPPQPFNICTIMYTSGTSGDPKGVVLTHETIATFVSG-VDLFLDQFEDKM  263 (660)
Q Consensus       185 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~TSGTTG~pK~v~~th~~l~~~~~~-~~~~~~~~~~~~  263 (660)
                      ..    .........+....... ..........++++++|+|||||||.||+|++||++++..... +...+     ++
T Consensus       222 ~~----~~~~~~~~~~~~~~~~~-~~~~~~~~~~~dd~a~IlyTSGTTG~PKgV~~sh~~~l~~~~~~~~~~~-----~~  291 (643)
T d1pg4a_         222 DI----DWQEGRDLWWRDLIEKA-SPEHQPEAMNAEDPLFILYTSGSTGKPKGVLHTTGGYLVYAATTFKYVF-----DY  291 (643)
T ss_dssp             CC----CCCBTTEEEHHHHHTTS-CSCCCCCCEETTSEEEEEEECCSSSSCEEEEEESHHHHHHHHHHHHHHT-----TC
T ss_pred             cc----ccccccchhhhhhhccc-CcccCCCCCCCCCeEEEEeCCCcccCCCEEEEccHHHHHHHHHHHHHhh-----CC
Confidence            00    00011122333343332 3333445567899999999999999999999999997655443 34444     78


Q ss_pred             CCCcEEEEecChhHHHHHHH-HHHHhhcCcEEEEecC-----ChhhHHHHhhhhcCeEEEechHHHHHHHHHHHHHHHhh
Q 006111          264 TVDDVYLSFLPLAHILDRVI-EEYFFRRGASVGYYHG-----DLNALRDDLMELKPTLLAGVPRVFEKIHEGIKKALEEL  337 (660)
Q Consensus       264 ~~~~~~l~~~pl~~~~g~~~-~l~~l~~G~~~v~~~~-----~~~~~~~~i~~~~~t~~~~~p~~~~~l~~~~~~~~~~~  337 (660)
                      .++|++++.+|++|.+++.. ++.+|+.|+++++++.     ++..+++.|+++++|+++++|++++.|.+....     
T Consensus       292 ~~~d~~~~~~p~~~~~g~~~~l~~~L~~G~t~vl~~~~~~~~~~~~~~~~i~~~~vt~~~~~P~~l~~l~~~~~~-----  366 (643)
T d1pg4a_         292 HPGDIYWCTADVGWVTGHSYLLYGPLACGATTLMFEGVPNWPTPARMCQVVDKHQVNILYTAPTAIRALMAEGDK-----  366 (643)
T ss_dssp             CTTCEEEECSCTTSHHHHHHTTHHHHHTTCEEEEECSCTTSSSTTHHHHHHHHHTCSEEEECHHHHHHHHTTGGG-----
T ss_pred             CCCCEEEEeCChHHHHHHHHHHHHHHHhCCEEEEecCCCCCCCHHHHHHHHHHHCCcEEEehHHHHHHHHhCcch-----
Confidence            89999999999999999876 5677999999999763     788999999999999999999999988653211     


Q ss_pred             chHHHHHHHHHHHHHHHHHhhCCCCCCcchhhhHHHHHHHHHHhCCcEeEEEEccCCCCHHHHHHHHHhcC---Cceeee
Q 006111          338 RPLRRRIFDALYKYKLAWMNMGYKQREASPLADLLAFRKVKARLGGRLRLVISGGAPLSTEVEEFLRVTCC---AFLVQG  414 (660)
Q Consensus       338 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lr~i~~~G~~l~~~~~~~~~~~~~---~~v~~~  414 (660)
                                                    ..+..++        ++||.++++|+++++++.+++.+.++   +++++.
T Consensus       367 ------------------------------~~~~~dl--------~sLr~i~~~G~pl~~~~~~~~~~~~g~~~~~i~~~  408 (643)
T d1pg4a_         367 ------------------------------AIEGTDR--------SSLRILGSVGEPINPEAWEWYWKKIGKEKCPVVDT  408 (643)
T ss_dssp             ------------------------------GTTTCCC--------TTCCEEEEESSCCCHHHHHHHHHHTTTTCSCEEEE
T ss_pred             ------------------------------hccccCC--------CceEEEEEEeCCCCHHHHHHHHHHhCCCCceEEEe
Confidence                                          1111122        58999999999999999999998884   779999


Q ss_pred             cCCCCCCCceecccCCC-ccccCccCCCccCeeEEeeecCCCCCCCCCCCCCceEEEcc--CCcccccCCCchhhhhcc-
Q 006111          415 YGLTETCGPTTVCFPDE-MCMVGTAGPVSVYSELRLEEVPEMGYSPLDDPPCGEVCVRG--KTLFSGYYKNPDLTRESI-  490 (660)
Q Consensus       415 YG~tE~~~~~~~~~~~~-~~~~~~~G~~~~~~~v~ivd~~~~~~~~~~~~~~Gei~v~g--~~~~~gy~~~~~~~~~~~-  490 (660)
                      ||+||+++.++....+. ....+++|+|++|++++|+| +++..+  ..++.|||+|+|  |+++.||+++++.+.+.+ 
T Consensus       409 yG~TE~g~~~~~~~~~~~~~~~gs~G~p~~g~~v~ivd-~~g~~~--~~g~~Gel~v~~~~p~~~~~~~~~~~~~~~~~~  485 (643)
T d1pg4a_         409 WWQTETGGFMITPLPGAIELKAGSATRPFFGVQPALVD-NEGHPQ--EGATEGNLVITDSWPGQARTLFGDHERFEQTYF  485 (643)
T ss_dssp             BCCGGGSSCSBCCCTTTCCBCTTCCBSBCTTCCEEEEC-TTCCBC--CSSEEEEEEECSCCTTCCCEETTCHHHHHHHHH
T ss_pred             echhhccceEEecCCCccCCCCCccccccCCCEEEEEC-CCCCCC--CCCceEEEEEecCCCcccccccCChhhchhhhc
Confidence            99999998776654433 44568999999999999999 776644  456789999999  568899999998777665 


Q ss_pred             --cCCccccCceEEECCCCcEEEEeccCCeeEcCCCeeecchhHHHHHhcCcCcceEEEEecCCC---CeEEEEEEcChh
Q 006111          491 --IDGWFHTGDIGQILPNGVVKIIDRKKNLIKISQGEYVALEYLENVYCVAPIIEDIWVYGDSLK---SMLVAVVVPCEE  565 (660)
Q Consensus       491 --~~g~~~TGDl~~~~~~G~l~~~GR~~d~i~~~~G~~v~~~~iE~~l~~~p~V~~~~V~~~~~~---~~~~a~v~~~~~  565 (660)
                        .+|||+|||+|++|+||+|+++||+||+|++ +|++|+|.|||++|.+||+|.||+|++.+++   +.++|+|+++++
T Consensus       486 ~~~~g~~~TGDl~~~d~dG~l~i~GR~dd~ik~-~G~ri~p~eIE~~l~~~p~V~eaaVvg~~d~~~ge~~~a~Vv~~~~  564 (643)
T d1pg4a_         486 STFKNMYFSGDGARRDEDGYYWITGRVDDVLNV-SGHRLGTAEIESALVAHPKIAEAAVVGIPHAIKGQAIYAYVTLNHG  564 (643)
T ss_dssp             SSSTTSEEEEEEEEECTTSCEEEEEESSSEEEE-TTEEEEHHHHHHHHHHSTTEEEEEEEEEEETTTEEEEEEEEEECTT
T ss_pred             ccCCCeEEcCCEEEECCCceEEEecccccEEEE-CCEEECHHHHHHHHHhCCCcceEEEEEEECCCCCeEEEEEEEECCC
Confidence              5899999999999999999999999999997 7999999999999999999999999997654   489999999876


Q ss_pred             hHHHHHHHCCCCCcHHHHhccHHHHHHHHHHHHHHHHhCCCCCceeeeEEEEecCCCCCCCCccccccccchHHHHHHHH
Q 006111          566 DTKKWAYSNGHAGSFLELCSLVQLQNYILSELKNAAERNKLRGFEHIKGVILDPRPFDMERDLVTATLKKKRNKLLIYYQ  645 (660)
Q Consensus       566 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~l~~~~~p~~i~~~~~~~~~~~~P~t~~GKv~R~~l~~~~~  645 (660)
                      ..                 .+.+    +.++|+++++ .+|++|++|+.|+++      +++|+|++||++|++|++++.
T Consensus       565 ~~-----------------~~~~----~~~~i~~~~~-~~L~~~~vP~~i~~v------~~lP~T~sGKi~R~~Lr~~~~  616 (643)
T d1pg4a_         565 EE-----------------PSPE----LYAEVRNWVR-KEIGPLATPDVLHWT------DSLPKTRSGKIMRRILRKIAA  616 (643)
T ss_dssp             CC-----------------CCHH----HHHHHHHHHH-HHTCGGGCCSEEEEC------SCCCBCTTSCBCHHHHHHHHH
T ss_pred             CC-----------------CCHH----HHHHHHHHHH-hhCCcccCccEEEEE------CCCCCCCCcCccHHHHHHHhc
Confidence            41                 2222    3344555555 679999999999987      446999999999999999997


Q ss_pred             HHHH
Q 006111          646 VEID  649 (660)
Q Consensus       646 ~~i~  649 (660)
                      .+..
T Consensus       617 ~~~~  620 (643)
T d1pg4a_         617 GDTS  620 (643)
T ss_dssp             TC--
T ss_pred             CCcc
Confidence            6433

>d1ry2a_ e.23.1.1 (A:) Acetyl-CoA synthetase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Multi-domain proteins (alpha and beta)
fold: Acetyl-CoA synthetase-like
superfamily: Acetyl-CoA synthetase-like
family: Acetyl-CoA synthetase-like
domain: Acetyl-CoA synthetase
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=100.00  E-value=2.5e-72  Score=630.41  Aligned_cols=535  Identities=18%  Similarity=0.186  Sum_probs=413.2

Q ss_pred             CCcHHHHHHHHHHhCCCCCceeeeccccCCCCCceEEeHHHHHHHHHHHHHHHH-HcCCCCCCEEEEEeCCchhHHHHHH
Q 006111           41 LNTAWDIFSMSVQKYPGNRMLGWRPFVDGKFGPYVWKTYKEVYEEVLQIVSALR-ASGAEPGCRVGIYGANCPQWVEAME  119 (660)
Q Consensus        41 ~~ti~~~l~~~a~~~pd~~a~~~~~~~d~~~~~~~~~Ty~ql~~~v~~lA~~L~-~~Gl~~gd~V~l~~~n~~e~~~~~l  119 (660)
                      .|...++|+++|+++||++|+++.   ..+.+..+++||+||.++++++|++|+ ++|+++||+|+++++|++++++++|
T Consensus        58 lN~~~n~ldr~a~~~pd~~Ali~~---~~~~g~~~~~Ty~eL~~~v~~~A~~L~~~~Gv~~Gd~V~i~~~n~~e~~~~~l  134 (640)
T d1ry2a_          58 LNACYNCVDRHALKTPNKKAIIFE---GDEPGQGYSITYKELLEEVCQVAQVLTYSMGVRKGDTVAVYMPMVPEAIITLL  134 (640)
T ss_dssp             ECHHHHHTHHHHTTCTTSEEEEEE---CSSTTCCEEEEHHHHHHHHHHHHHHHHHTSCCCTTCEEEECCCSSHHHHHHHH
T ss_pred             hhHHHHHHHHHHhhCCCCEEEEEE---ecCCCCeeEEeHHHHHHHHHHHHHHHHHhcCCCCCCEEEEEeCCCHHHHHHHH
Confidence            355688999999999999999987   445566689999999999999999997 6799999999999999999999999


Q ss_pred             HHHhCCCeEEecCCCCChhHHHHHHhcccceEEEEccchhhhh--------hccccccccCccEEEEecCCcHHHHHHHh
Q 006111          120 ACNALSLICVPLYDTLGPGAVNFILDHAEIDFVFVQDKKVKEL--------LSPDCRSAQRLRVMVCFTSLTAEQKEMAV  191 (660)
Q Consensus       120 A~~~~G~~~vpl~~~~~~~~l~~~l~~~~~~~ii~~~~~~~~~--------~~~~~~~~~~~~~i~~~~~~~~~~~~~~~  191 (660)
                      ||+++|++++|+++.++.+++.++++.+++++++++.......        ........................   ..
T Consensus       135 A~~~~Gav~vpi~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~  211 (640)
T d1ry2a_         135 AISRIGAIHSVVFAGFSSNSLRDRINDGDSKVVITTDESNRGGKVIETKRIVDDALRETPGVRHVLVYRKTNNPS---VA  211 (640)
T ss_dssp             HHHHTTCEEEECCTTSCHHHHHHHHHHHTCSEEEEESBCCBTTBCCBHHHHHHHHTTSCTTCCEEEEECSSCCSS---CC
T ss_pred             HhccCceEeecCCCCCCHHHHHHHHHhhhccccccchhhhhccchhhhHHHHHhhhhhhcccceeeeeccccccc---cc
Confidence            9999999999999999999999999999999999987543211        111111222333333332221100   00


Q ss_pred             hCCcceeeHHHHHhcCccCCccCCCCCCCceEEEEecCCCCCCCceeeecchhHHHHhhhhhh-hcccccCCCCCCcEEE
Q 006111          192 QTGIKPYSWDEFLHLGKVNEMEILPPQPFNICTIMYTSGTSGDPKGVVLTHETIATFVSGVDL-FLDQFEDKMTVDDVYL  270 (660)
Q Consensus       192 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~TSGTTG~pK~v~~th~~l~~~~~~~~~-~~~~~~~~~~~~~~~l  270 (660)
                      ........+....... .......+..++++++|+|||||||.||||+++|++++........ .+     .+..+|+++
T Consensus       212 ~~~~~~~~~~~~~~~~-~~~~~~~~~~~~d~a~i~~TSGTTG~PKgV~~~h~~~~~~~~~~~~~~~-----~~~~~d~~l  285 (640)
T d1ry2a_         212 FHAPRDLDWATEKKKY-KTYYPCTPVDSEDPLFLLYTSGSTGAPKGVQHSTAGYLLGALLTMRYTF-----DTHQEDVFF  285 (640)
T ss_dssp             CCSSSEEEHHHHHTTS-CSCCCCCCEETTSCCEEEEECCSSSSCEEEEECSHHHHHHHHHHHHHHS-----CCCSSCEEE
T ss_pred             cccccccccccccccc-ccccccCCcccccCCEEEECCCCCCCCcceeeccccHHHHHHHHHHhhc-----CCCccccee
Confidence            0001112222222221 2334445567899999999999999999999999998776554433 33     788999999


Q ss_pred             EecChhHHHHHHH-HHHHhhcCcEEEEecC-----ChhhHHHHhhhhcCeEEEechHHHHHHHHHHHHHHHhhchHHHHH
Q 006111          271 SFLPLAHILDRVI-EEYFFRRGASVGYYHG-----DLNALRDDLMELKPTLLAGVPRVFEKIHEGIKKALEELRPLRRRI  344 (660)
Q Consensus       271 ~~~pl~~~~g~~~-~l~~l~~G~~~v~~~~-----~~~~~~~~i~~~~~t~~~~~p~~~~~l~~~~~~~~~~~~~~~~~~  344 (660)
                      +.+|++|.+++.. ++.++..|+++++.+.     ++..+++.|+++++|+++++|++++.|.+..              
T Consensus       286 ~~~pl~~~~g~~~~~~~~l~~G~~~v~~~~~~~~~~~~~~~~~i~~~~vt~~~~~P~~~~~l~~~~--------------  351 (640)
T d1ry2a_         286 TAGDIGWITGHTYVVYGPLLYGCATLVFEGTPAYPNYSRYWDIIDEHKVTQFYVAPTALRLLKRAG--------------  351 (640)
T ss_dssp             ECSCTTSHHHHHHTTHHHHHHTSEEEEECSCTTSSCTTHHHHHHHHTTCSEEEECHHHHHHHTTSC--------------
T ss_pred             eccchhhhhhHHHHHHHHHHhCCEEEEecCCCCCCCHHHHHHHHHHhCccEEEcChHHHHHHHhcc--------------
Confidence            9999999999875 6677999999988764     7889999999999999999999998875321              


Q ss_pred             HHHHHHHHHHHHhhCCCCCCcchhhhHHHHHHHHHHhCCcEeEEEEccCCCCHHHHHHHHHhcC---CceeeecCCCCCC
Q 006111          345 FDALYKYKLAWMNMGYKQREASPLADLLAFRKVKARLGGRLRLVISGGAPLSTEVEEFLRVTCC---AFLVQGYGLTETC  421 (660)
Q Consensus       345 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lr~i~~~G~~l~~~~~~~~~~~~~---~~v~~~YG~tE~~  421 (660)
                                           ....+..++        ++||.+++||+++++++.+++.+.+|   .++++.||+||++
T Consensus       352 ---------------------~~~~~~~~l--------~sLr~v~~gG~~l~~~~~~~~~~~~g~~~~~i~~~yg~te~~  402 (640)
T d1ry2a_         352 ---------------------DSYIENHSL--------KSLRCLGSVGEPIAAEVWEWYSEKIGKNEIPIVDTYWQTESG  402 (640)
T ss_dssp             ---------------------TTSSSSCCC--------TTCCEEEECSSCCCHHHHHHHHHTTSCSSSCEEECBCCTTTC
T ss_pred             ---------------------ccccccCCC--------CceEEEEEecccCcHHHHHHHHHhcCCCcceEEeeecccccc
Confidence                                 111111222        49999999999999999999999885   5699999999999


Q ss_pred             CceecccCCC--ccccCccCCCccCeeEEeeecCCCCCCCCCCCCCceEEEcc--CCcccccCCCchhhhhcc---cCCc
Q 006111          422 GPTTVCFPDE--MCMVGTAGPVSVYSELRLEEVPEMGYSPLDDPPCGEVCVRG--KTLFSGYYKNPDLTRESI---IDGW  494 (660)
Q Consensus       422 ~~~~~~~~~~--~~~~~~~G~~~~~~~v~ivd~~~~~~~~~~~~~~Gei~v~g--~~~~~gy~~~~~~~~~~~---~~g~  494 (660)
                      ........+.  ....+++|.|++|++++|+| ++++....+.++.|||++++  |+++.||+++++.+.+.|   .+||
T Consensus       403 ~~~~~~~~~~~~~~~~gs~G~p~~g~~~~i~d-~~~~~~~~~~~~~Gel~i~~~~p~~~~gy~~~~e~t~~~~~~~~~gw  481 (640)
T d1ry2a_         403 SHLVTPLAGGVTPMKPGSASFPFFGIDAVVLD-PNTGEELNTSHAEGVLAVKAAWPSFARTIWKNHDRYLDTYLNPYPGY  481 (640)
T ss_dssp             SCSEECCTTTCCCCCTTCCCEECTTCCEEEEC-SSSTTCEECSSCEEEEEESSCCTTSCCEETTCHHHHHHHHTSSSTTS
T ss_pred             cccccccCCCcCCCCCcccccccCCceEEEEe-CCCCcccCCCCceEEEEEEecCCCcccccccCHHHHHhhhccCCCCe
Confidence            8776655443  34568999999999999999 77776666666789999998  689999999999998877   4599


Q ss_pred             cccCceEEECCCCcEEEEeccCCeeEcCCCeeecchhHHHHHhcCcCcceEEEEecCCC---CeEEEEEEcChhhHHHHH
Q 006111          495 FHTGDIGQILPNGVVKIIDRKKNLIKISQGEYVALEYLENVYCVAPIIEDIWVYGDSLK---SMLVAVVVPCEEDTKKWA  571 (660)
Q Consensus       495 ~~TGDl~~~~~~G~l~~~GR~~d~i~~~~G~~v~~~~iE~~l~~~p~V~~~~V~~~~~~---~~~~a~v~~~~~~~~~~~  571 (660)
                      |+|||+|++|+||+|+++||.||+|++ +|++|+|.+||++|.+||+|.||+|+|.+++   +.++|+|+++++..... 
T Consensus       482 ~~TGDlg~~d~dG~l~i~GR~dd~Ik~-~G~~I~p~eIE~~l~~~p~V~~a~Vvg~~d~~~ge~~~a~Vv~~~~~~~~~-  559 (640)
T d1ry2a_         482 YFTGDGAAKDKDGYIWILGRVDDVVNV-SGHRLSTAEIEAAIIEDPIVAECAVVGFNDDLTGQAVAAFVVLKNKSSWST-  559 (640)
T ss_dssp             EEEEEEEEECTTCCEEECSCTTSCBCS-SSCCBCHHHHHHHHHSSTTEEEEEEECCCCCTTSCCCEEEEEEC--------
T ss_pred             EEcCCceeECCCCCEEEEEcCCCEEEE-CCEEECHHHHHHHHHhCCCccEEEEEEEECCCCCeEEEEEEEEcCCCCccc-
Confidence            999999999999999999999999996 8999999999999999999999999997764   48999999988652110 


Q ss_pred             HHCCCCCcHHHHhccHHHHHHHHHHHHHHHHhCCCCCceeeeEEEEecCCCCCCCCccccccccchHHHHHHHHHHHHHH
Q 006111          572 YSNGHAGSFLELCSLVQLQNYILSELKNAAERNKLRGFEHIKGVILDPRPFDMERDLVTATLKKKRNKLLIYYQVEIDQL  651 (660)
Q Consensus       572 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~l~~~~~p~~i~~~~~~~~~~~~P~t~~GKv~R~~l~~~~~~~i~~~  651 (660)
                                   ...+..+.+.++|.++++ .+|++|++|+.|++++      .+|+|++|||+|++|++++.++.+++
T Consensus       560 -------------~~~~~~~~l~~~l~~~~~-~~L~~~~~P~~i~~v~------~lP~T~sGKi~R~~Lr~~~~~~~~~~  619 (640)
T d1ry2a_         560 -------------ATDDELQDIKKHLVFTVR-KDIGPFAAPKLIILVD------DLPKTRSGKIMRRILRKILAGESDQL  619 (640)
T ss_dssp             ------------------CCSHHHHHHHHHH-HHTCTTTSCSEEEECS------CCCBCTTSCBCHHHHHHSCC------
T ss_pred             -------------cchHHHHHHHHHHHHHHH-hhCCCCCCceEEEEeC------CCCCCCCcCccHHHHHHHHhCCcccc
Confidence                         001112234556666665 6899999999999874      46899999999999999998776665


Q ss_pred             Hh
Q 006111          652 YE  653 (660)
Q Consensus       652 y~  653 (660)
                      +.
T Consensus       620 ~d  621 (640)
T d1ry2a_         620 GD  621 (640)
T ss_dssp             --
T ss_pred             CC
Confidence            43

>d1v25a_ e.23.1.1 (A:) Long chain fatty acid-CoA ligase TT0168 {Thermus thermophilus [TaxId: 274]}

class: Multi-domain proteins (alpha and beta)
fold: Acetyl-CoA synthetase-like
superfamily: Acetyl-CoA synthetase-like
family: Acetyl-CoA synthetase-like
domain: Long chain fatty acid-CoA ligase TT0168
species: Thermus thermophilus [TaxId: 274]

Probab=100.00  E-value=1.3e-71  Score=612.29  Aligned_cols=507  Identities=24%  Similarity=0.303  Sum_probs=388.0

Q ss_pred             CCCCCcHHHHHHHHHHhCCCCCceeeeccccCCCCCceEEeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEeCCchhHHHH
Q 006111           38 DSDLNTAWDIFSMSVQKYPGNRMLGWRPFVDGKFGPYVWKTYKEVYEEVLQIVSALRASGAEPGCRVGIYGANCPQWVEA  117 (660)
Q Consensus        38 ~~~~~ti~~~l~~~a~~~pd~~a~~~~~~~d~~~~~~~~~Ty~ql~~~v~~lA~~L~~~Gl~~gd~V~l~~~n~~e~~~~  117 (660)
                      -.+..||.++|+++|+++||++|+++.   +  +++++++||+||.++++++|++|.+.|+++||+|+++++|+++++++
T Consensus         7 ~~~~~~l~~~l~~~a~~~pd~~av~~~---~--~g~~~~~Ty~el~~~~~~~A~~L~~~Gv~~gd~V~i~~~n~~e~~~~   81 (534)
T d1v25a_           7 MDEELNLWDFLERAAALFGRKEVVSRL---H--TGEVHRTTYAEVYQRARRLMGGLRALGVGVGDRVATLGFNHFRHLEA   81 (534)
T ss_dssp             CCCCCCTHHHHHHHHHHSTTCEEEEEC---T--TSCEEEEEHHHHHHHHHHHHHHHHHTTCCTTCEEEEECCSSHHHHHH
T ss_pred             CCCCCCHHHHHHHHHHHcCCCeEEEEe---c--CCceEEEcHHHHHHHHHHHHHHHHHCCcCCCCEEEEEeCCCHHHHHH
Confidence            344558999999999999999999876   3  35567899999999999999999999999999999999999999999


Q ss_pred             HHHHHhCCCeEEecCCCCChhHHHHHHhcccceEEEEccchhhhhhccccccccCccEEEEecCCcHHHHHHHhhCCcce
Q 006111          118 MEACNALSLICVPLYDTLGPGAVNFILDHAEIDFVFVQDKKVKELLSPDCRSAQRLRVMVCFTSLTAEQKEMAVQTGIKP  197 (660)
Q Consensus       118 ~lA~~~~G~~~vpl~~~~~~~~l~~~l~~~~~~~ii~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~  197 (660)
                      +|||+++|++++|++|.++.+++..+|+.+++++++++........... .....+...+........          ..
T Consensus        82 ~lA~~~~G~v~vpl~~~~~~~~l~~~l~~~~~~~i~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~----------~~  150 (534)
T d1v25a_          82 YFAVPGMGAVLHTANPRLSPKEIAYILNHAEDKVLLFDPNLLPLVEAIR-GELKTVQHFVVMDEKAPE----------GY  150 (534)
T ss_dssp             HHHHHHTTCEEEECCTTSCHHHHHHHHHHHTCSEEEECGGGHHHHHHHG-GGCSSCCEEEESSSCCCT----------TC
T ss_pred             HHHHHHhCcEEEecCCCCCHHHHHHHHHhhccccccccchhhhhHHHHh-hcccccceeEEeeccccc----------cc
Confidence            9999999999999999999999999999999999999988777654433 233445555544433210          01


Q ss_pred             eeHHHHHhcCccCCccCCCCCCCceEEEEecCCCCCCCceeeecchhHHHHhhhhhhhcccccCCCCCCcEEEEecChhH
Q 006111          198 YSWDEFLHLGKVNEMEILPPQPFNICTIMYTSGTSGDPKGVVLTHETIATFVSGVDLFLDQFEDKMTVDDVYLSFLPLAH  277 (660)
Q Consensus       198 ~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~TSGTTG~pK~v~~th~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~pl~~  277 (660)
                      ......    ...........++++++++|||||||.||+|.++|.+++..........   .......+++++.+|++|
T Consensus       151 ~~~~~~----~~~~~~~~~~~~~~~a~i~~TSGTTG~PKgv~~s~~~l~~~~~~~~~~~---~~~~~~~d~~~~~~p~~~  223 (534)
T d1v25a_         151 LAYEEA----LGEEADPVRVPERAACGMAYTTGTTGLPKGVVYSHRALVLHSLAASLVD---GTALSEKDVVLPVVPMFH  223 (534)
T ss_dssp             EEHHHH----CCSCCCCCCCCTTSEEEEEEECSSSSSCEEEEEEHHHHHHHHHHTTSTT---TTCCCTTCEEEECSCTTS
T ss_pred             cccccc----ccccccccccccCCcEEEEEecCCCCCccccccccchhhhhhhhhhhhc---ccccccccccccccchhh
Confidence            111111    1122334456788999999999999999999999999986554432221   226788999999999999


Q ss_pred             HHHHHHHHHHhhcCcEEEEecC--ChhhHHHHhhhhcCeEEEechHHHHHHHHHHHHHHHhhchHHHHHHHHHHHHHHHH
Q 006111          278 ILDRVIEEYFFRRGASVGYYHG--DLNALRDDLMELKPTLLAGVPRVFEKIHEGIKKALEELRPLRRRIFDALYKYKLAW  355 (660)
Q Consensus       278 ~~g~~~~l~~l~~G~~~v~~~~--~~~~~~~~i~~~~~t~~~~~p~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  355 (660)
                      .+++...+..+..|+++++...  ++..+...+.++++|+++++|.++..+.........                    
T Consensus       224 ~~~~~~~~~~~~~g~~~v~~~~~~~~~~~~~~~~~~~vt~~~~~p~~~~~~~~~~~~~~~--------------------  283 (534)
T d1v25a_         224 VNAWCLPYAATLVGAKQVLPGPRLDPASLVELFDGEGVTFTAGVPTVWLALADYLESTGH--------------------  283 (534)
T ss_dssp             HHHHTHHHHHHHHTCEEEECTTCCSHHHHHHHHHHTTCCEEEECHHHHHHHHHHHHHHTC--------------------
T ss_pred             hccccccceeeeecceeeeccccccccccchhhhhccccccccCchhhhhhhhhhccccc--------------------
Confidence            9999888888888888777654  899999999999999999999999988765433211                    


Q ss_pred             HhhCCCCCCcchhhhHHHHHHHHHHhCCcEeEEEEccCCCCHHHHHHHHHhcCCceeeecCCCCCCCceecccCCCc---
Q 006111          356 MNMGYKQREASPLADLLAFRKVKARLGGRLRLVISGGAPLSTEVEEFLRVTCCAFLVQGYGLTETCGPTTVCFPDEM---  432 (660)
Q Consensus       356 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lr~i~~~G~~l~~~~~~~~~~~~~~~v~~~YG~tE~~~~~~~~~~~~~---  432 (660)
                                               ..++||.+++||++++++..+++++ ++..+++.||+||++..++.......   
T Consensus       284 -------------------------~~~~lr~~~~gG~~~~~~~~~~~~~-~~~~i~~~yG~te~~~~~~~~~~~~~~~~  337 (534)
T d1v25a_         284 -------------------------RLKTLRRLVVGGSAAPRSLIARFER-MGVEVRQGYGLTETSPVVVQNFVKSHLES  337 (534)
T ss_dssp             -------------------------CCSSCCEEEECSSCCCHHHHHHHHH-TTCEEEEEEECGGGSSEEEECCCCGGGTT
T ss_pred             -------------------------cccceeEEEEecCCCCHHHHHHHHH-hCCeeeeeccccccccceeecccCccccc
Confidence                                     1259999999999999999999886 58999999999999998876543321   


Q ss_pred             -------cccCccCCCccCeeEEeeecCCCCCCCCCCCCCceEEEccCCcccccCCCchhhhhcc-cCCccccCceEEEC
Q 006111          433 -------CMVGTAGPVSVYSELRLEEVPEMGYSPLDDPPCGEVCVRGKTLFSGYYKNPDLTRESI-IDGWFHTGDIGQIL  504 (660)
Q Consensus       433 -------~~~~~~G~~~~~~~v~ivd~~~~~~~~~~~~~~Gei~v~g~~~~~gy~~~~~~~~~~~-~~g~~~TGDl~~~~  504 (660)
                             ...+++|+|++|++++|+| ++++..+.+.++.|||+|+|++++.||+++++.+...| .||||+|||+|+++
T Consensus       338 ~~~~~~~~~~~~~G~p~~g~~~~i~d-~~~~~~~~~~~~~Gel~v~g~~v~~gY~~~~~~t~~~~~~dg~~~TGDlg~~~  416 (534)
T d1v25a_         338 LSEEEKLTLKAKTGLPIPLVRLRVAD-EEGRPVPKDGKALGEVQLKGPWITGGYYGNEEATRSALTPDGFFRTGDIAVWD  416 (534)
T ss_dssp             SCHHHHHHHHTSCBEECTTCEEEEEC-TTSCBCCSSSCCCEEEEEESTTSBSSCBTCHHHHHTTBCTTSCEEEEEEEEEC
T ss_pred             cCccccccccccceeccCCcEEEEEC-CCCCCCCCCCCeeEEEEEcCCcccceecCChhhhhhhcccCCCCccCceeEEC
Confidence                   2347899999999999999 88888888888899999999999999999999999998 89999999999999


Q ss_pred             CCCcEEEEeccCCeeEcCCCeeecchhHHHHHhcCcCcceEEEEecCCC---CeEEEEEEcChhhHHHHHHHCCCCCcHH
Q 006111          505 PNGVVKIIDRKKNLIKISQGEYVALEYLENVYCVAPIIEDIWVYGDSLK---SMLVAVVVPCEEDTKKWAYSNGHAGSFL  581 (660)
Q Consensus       505 ~~G~l~~~GR~~d~i~~~~G~~v~~~~iE~~l~~~p~V~~~~V~~~~~~---~~~~a~v~~~~~~~~~~~~~~~~~~~~~  581 (660)
                      +||+++++||.+|+|++ +|++|+|.+||++|.+||+|.||+|++.+++   +.++|+|+++.+..              
T Consensus       417 ~~G~l~~~GR~~~~i~~-~G~~v~~~eIE~~l~~~~~V~~a~v~~~~~~~~~~~l~a~vv~~~~~~--------------  481 (534)
T d1v25a_         417 EEGYVEIKDRLKDLIKS-GGEWISSVDLENALMGHPKVKEAAVVAIPHPKWQERPLAVVVPRGEKP--------------  481 (534)
T ss_dssp             TTCCEEEEEESSCEEEE-TTEEEEHHHHHCC----------CEEEEECSSSSEEEEECC---------------------
T ss_pred             CCccEEEecccccEEEE-CCEEECHHHHHHHHHhCCCcceEEEEEEECCCCCeEEEEEEEeCCCCC--------------
Confidence            99999999999999997 8999999999999999999999999986654   37888888876431              


Q ss_pred             HHhccHHHHHHHHHHHHHHHHhCCCCCceeeeEEEEecCCCCCCCCccccccccchHHHHHHHHH
Q 006111          582 ELCSLVQLQNYILSELKNAAERNKLRGFEHIKGVILDPRPFDMERDLVTATLKKKRNKLLIYYQV  646 (660)
Q Consensus       582 ~~~~~~~~~~~~~~~l~~~~~~~~l~~~~~p~~i~~~~~~~~~~~~P~t~~GKv~R~~l~~~~~~  646 (660)
                         ..        +++.+...+..||+|++|+.|++++      ++|+|++|||+|++||++|++
T Consensus       482 ---~~--------~~~~~~~~~~~l~~~~~P~~i~~~~------~lP~t~~GKi~R~~lr~~~~~  529 (534)
T d1v25a_         482 ---TP--------EELNEHLLKAGFAKWQLPDAYVFAE------EIPRTSAGKFLKRALREQYKN  529 (534)
T ss_dssp             -----------------------CCCTTTSCSBC--------------------CCTTHHHHSTT
T ss_pred             ---CH--------HHHHHHHHHhcCCcCCCccEEEEEC------CCCCCCCccccHHHHHHHHHh
Confidence               00        1112221246899999999998874      469999999999999998853

>d1lcia_ e.23.1.1 (A:) Luciferase {Firefly (Photinus pyralis) [TaxId: 7054]}

class: Multi-domain proteins (alpha and beta)
fold: Acetyl-CoA synthetase-like
superfamily: Acetyl-CoA synthetase-like
family: Acetyl-CoA synthetase-like
domain: Luciferase
species: Firefly (Photinus pyralis) [TaxId: 7054]

Probab=100.00  E-value=1.6e-69  Score=596.58  Aligned_cols=516  Identities=24%  Similarity=0.267  Sum_probs=398.4

Q ss_pred             CCCCCCCCCCcHHHHHHHHHHhC---CCCCceeeeccccCCCCCceEEeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEeC
Q 006111           33 GFPSVDSDLNTAWDIFSMSVQKY---PGNRMLGWRPFVDGKFGPYVWKTYKEVYEEVLQIVSALRASGAEPGCRVGIYGA  109 (660)
Q Consensus        33 ~~~~~~~~~~ti~~~l~~~a~~~---pd~~a~~~~~~~d~~~~~~~~~Ty~ql~~~v~~lA~~L~~~Gl~~gd~V~l~~~  109 (660)
                      +-|..|-...|+.++|.+.++++   |+.+|+++.   ..    .+++||+||.+++.++|++|+++|+++||+|+++++
T Consensus         8 p~p~~p~~~~t~~~~l~~~~~~~~~~P~~~a~~d~---~~----~~~lTy~el~~~~~~lA~~L~~~Gi~~Gd~Vai~~~   80 (541)
T d1lcia_           8 PAPFYPLEDGTAGEQLHKAMKRYALVPGTIAFTDA---HI----EVNITYAEYFEMSVRLAEAMKRYGLNTNHRIVVCSE   80 (541)
T ss_dssp             CCCSSCCCSSCHHHHHHHHHHHHHTSTTCEEEEET---TT----CCEEEHHHHHHHHHHHHHHHHHHTCCTTCEEEEECS
T ss_pred             CCCCCCCCCCCHHHHHHHHHHhhCCCCCeEEEEeC---CC----CeEeeHHHHHHHHHHHHHHHHHcCcCCCCEEEEEeC
Confidence            44555666789999999999988   555566543   22    157999999999999999999999999999999999


Q ss_pred             CchhHHHHHHHHHhCCCeEEecCCCCChhHHHHHHhcccceEEEEccchhhhhhccccccccCccEEEEecCCcHHHHHH
Q 006111          110 NCPQWVEAMEACNALSLICVPLYDTLGPGAVNFILDHAEIDFVFVQDKKVKELLSPDCRSAQRLRVMVCFTSLTAEQKEM  189 (660)
Q Consensus       110 n~~e~~~~~lA~~~~G~~~vpl~~~~~~~~l~~~l~~~~~~~ii~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~  189 (660)
                      |++++++++|||+++|++++|+++.++.+++..+|+.++++++|++++....+.+.. ...+....++..+....     
T Consensus        81 ns~e~~v~~lA~~~~G~i~vpl~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~-----  154 (541)
T d1lcia_          81 NSLQFFMPVLGALFIGVAVAPANDIYNERELLNSMNISQPTVVFVSKKGLQKILNVQ-KKLPIIQKIIIMDSKTD-----  154 (541)
T ss_dssp             SCSSTHHHHHHHHHHTCEEEECCTTCCHHHHHHHHHHHCCSEEEECGGGHHHHHHHH-HHCTTCCEEEETTCSSC-----
T ss_pred             CCHHHHHHHHHHHHhCeEEEecCCCCCHHHHHHHHHhccceEEeeeccccccchhcc-ccccccceeeeecCCcc-----
Confidence            999999999999999999999999999999999999999999999998877665543 34566667776654322     


Q ss_pred             HhhCCcceeeHHHHHhcCc------cCCccCCCCCCCceEEEEecCCCCCCCceeeecchhHHHHhhhhhhhcccccCCC
Q 006111          190 AVQTGIKPYSWDEFLHLGK------VNEMEILPPQPFNICTIMYTSGTSGDPKGVVLTHETIATFVSGVDLFLDQFEDKM  263 (660)
Q Consensus       190 ~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~~~~~~~i~~TSGTTG~pK~v~~th~~l~~~~~~~~~~~~~~~~~~  263 (660)
                          .....++........      ....+.....++++++|+|||||||.||+|++||++++..+......+.  ....
T Consensus       155 ----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~i~~TSGTTG~PKgV~~s~~~l~~~~~~~~~~~~--~~~~  228 (541)
T d1lcia_         155 ----YQGFQSMYTFVTSHLPPGFNEYDFVPESFDRDKTIALIMNSSGSTGLPKGVALPHRTACVRFSHARDPIF--GNQI  228 (541)
T ss_dssp             ----BTTBEEHHHHHHHHSCTTCCTTTCCCCCCCTTTSEEEEEEC-----CCCEEEEEHHHHHHHHHHHTCTTT--SCCC
T ss_pred             ----ccccchhhhhhhhhccccccccccCccccCCCCceEEEEeeccccccccccccccchhhhhhhhhhhhcc--cccc
Confidence                112233333332221      1222234456789999999999999999999999999887666544331  1256


Q ss_pred             CCCcEEEEecChhHHHHHHHHHHHhhcCcEEEEecC-ChhhHHHHhhhhcCeEEEechHHHHHHHHHHHHHHHhhchHHH
Q 006111          264 TVDDVYLSFLPLAHILDRVIEEYFFRRGASVGYYHG-DLNALRDDLMELKPTLLAGVPRVFEKIHEGIKKALEELRPLRR  342 (660)
Q Consensus       264 ~~~~~~l~~~pl~~~~g~~~~l~~l~~G~~~v~~~~-~~~~~~~~i~~~~~t~~~~~p~~~~~l~~~~~~~~~~~~~~~~  342 (660)
                      ..++++++++|++|.++....+..+..|+..+.... +.......+..+++|.++++|.++..+.+....          
T Consensus       229 ~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~~~~p~~~~~~~~~~~~----------  298 (541)
T d1lcia_         229 IPDTAILSVVPFHHGFGMFTTLGYLICGFRVVLMYRFEEELFLRSLQDYKIQSALLVPTLFSFFAKSTLI----------  298 (541)
T ss_dssp             CTTCEEEECSCTTSHHHHHHHHHHHHHTCEEEECSSCCHHHHHHHHHHTTCSEEECCHHHHHHHHHCSCG----------
T ss_pred             cccccccccccccccccccccccccccccccccccccccchhHHHHhhhhccccccCccccccccccccc----------
Confidence            789999999999999999888888778888777665 899999999999999999999999887642111          


Q ss_pred             HHHHHHHHHHHHHHhhCCCCCCcchhhhHHHHHHHHHHhCCcEeEEEEccCCCCHHHHHHHHHhcCC-ceeeecCCCCCC
Q 006111          343 RIFDALYKYKLAWMNMGYKQREASPLADLLAFRKVKARLGGRLRLVISGGAPLSTEVEEFLRVTCCA-FLVQGYGLTETC  421 (660)
Q Consensus       343 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lr~i~~~G~~l~~~~~~~~~~~~~~-~v~~~YG~tE~~  421 (660)
                                                 ...+        .++++.+++||+++++...+++.+.++. .++++||+||++
T Consensus       299 ---------------------------~~~~--------~~~l~~v~~gG~~~~~~~~~~~~~~~~~~~~~~~YG~TE~~  343 (541)
T d1lcia_         299 ---------------------------DKYD--------LSNLHEIASGGAPLSKEVGEAVAKRFHLPGIRQGYGLTETT  343 (541)
T ss_dssp             ---------------------------GGSC--------CTTCCEEECTTCCCCHHHHHHHHHHTTCSCCBCEECCGGGS
T ss_pred             ---------------------------cccc--------cccceEEEecccccccccccccccccCCceeeecCCccccC
Confidence                                       1111        1489999999999999999999988864 589999999999


Q ss_pred             CceecccCCCccccCccCCCccCeeEEeeecCCCCCCCCCCCCCceEEEccCCcccccCCCchhhhhcc-cCCccccCce
Q 006111          422 GPTTVCFPDEMCMVGTAGPVSVYSELRLEEVPEMGYSPLDDPPCGEVCVRGKTLFSGYYKNPDLTRESI-IDGWFHTGDI  500 (660)
Q Consensus       422 ~~~~~~~~~~~~~~~~~G~~~~~~~v~ivd~~~~~~~~~~~~~~Gei~v~g~~~~~gy~~~~~~~~~~~-~~g~~~TGDl  500 (660)
                      +.++........ .+++|+|+++++++|+| ++.+ .+++.|+.|||+|+|++++.||++++..+...+ .+|||+|||+
T Consensus       344 ~~~~~~~~~~~~-~~svG~p~~~~~~~i~d-~d~~-~~~~~g~~Gel~v~g~~~~~gY~~~~~~~~~~~~~~~~~~TGDl  420 (541)
T d1lcia_         344 SAILITPEGDDK-PGAVGKVVPFFEAKVVD-LDTG-KTLGVNQRGELCVRGPMIMSGYVNNPEATNALIDKDGWLHSGDI  420 (541)
T ss_dssp             SCSEECCCC----CCCCBEECTTCEEEEEC-TTTC-CBCCTTCCEEEEEESTTSCSEETTBHHHHHHHBCTTSCEEEEEE
T ss_pred             ceEEecCcccCC-CCccccccCCCEEEEEE-CCCC-cCCCCCCeEEEEEccCccCCeeCCChhhhhhcccCCccccCCCe
Confidence            988887665544 48999999999999999 5443 355567899999999999999999999888877 6899999999


Q ss_pred             EEECCCCcEEEEeccCCeeEcCCCeeecchhHHHHHhcCcCcceEEEEecCCC---CeEEEEEEcChhhHHHHHHHCCCC
Q 006111          501 GQILPNGVVKIIDRKKNLIKISQGEYVALEYLENVYCVAPIIEDIWVYGDSLK---SMLVAVVVPCEEDTKKWAYSNGHA  577 (660)
Q Consensus       501 ~~~~~~G~l~~~GR~~d~i~~~~G~~v~~~~iE~~l~~~p~V~~~~V~~~~~~---~~~~a~v~~~~~~~~~~~~~~~~~  577 (660)
                      |++|++|.+++.||.+|+|++ +|++|+|.+||++|.+||+|.||+|++.+++   +.++|+|+++++.        .. 
T Consensus       421 ~~~~~~G~~~~~GR~~d~i~~-~G~~v~~~~IE~~l~~~p~V~~~~v~~~~~~~~g~~~~a~v~~~~~~--------~~-  490 (541)
T d1lcia_         421 AYWDEDEHFFIVDRLKSLIKY-KGYQVAPAELESILLQHPNIFDAGVAGLPDDDAGELPAAVVVLEHGK--------TM-  490 (541)
T ss_dssp             EEECTTCCEEEC-----CEEE-TTEEECHHHHHHHHHTSTTEEEEEEEEEEETTTEEEEEEEEEECTTC--------CC-
T ss_pred             eEEcCCeEEEEeeeecCEEEE-CCEEECHHHHHHHHHhCCCccEEEEEEEECCCCCEEEEEEEEECCCC--------CC-
Confidence            999999999999999999997 7999999999999999999999999986543   4889999988753        11 


Q ss_pred             CcHHHHhccHHHHHHHHHHHHHHHHhCCCCCc-eeeeEEEEecCCCCCCCCccccccccchHHHHHHHHHH
Q 006111          578 GSFLELCSLVQLQNYILSELKNAAERNKLRGF-EHIKGVILDPRPFDMERDLVTATLKKKRNKLLIYYQVE  647 (660)
Q Consensus       578 ~~~~~~~~~~~~~~~~~~~l~~~~~~~~l~~~-~~p~~i~~~~~~~~~~~~P~t~~GKv~R~~l~~~~~~~  647 (660)
                             ..        ++|+++++ .+|+++ ++|+.|++++      .+|+|++|||+|++|++++.++
T Consensus       491 -------~~--------~~l~~~~~-~~l~~~~~~p~~i~~v~------~lP~t~~GKi~r~~l~~~~~~~  539 (541)
T d1lcia_         491 -------TE--------KEIVDYVA-SQVTTAKKLRGGVVFVD------EVPKGLTGKLDARKIREILIKA  539 (541)
T ss_dssp             -------CH--------HHHHHHHH-HHSCGGGSCTTEEEEES------SCCC-----CCHHHHHHHHHHH
T ss_pred             -------CH--------HHHHHHHH-HhCCccccCCcEEEEeC------CCCcCCCcCccHHHHHHHHHHh
Confidence                   11        22333343 345555 5788888874      4689999999999999998764

>d1amua_ e.23.1.1 (A:) Phenylalanine activating domain of gramicidin synthetase 1 {Bacillus brevis [TaxId: 1393]}

class: Multi-domain proteins (alpha and beta)
fold: Acetyl-CoA synthetase-like
superfamily: Acetyl-CoA synthetase-like
family: Acetyl-CoA synthetase-like
domain: Phenylalanine activating domain of gramicidin synthetase 1
species: Bacillus brevis [TaxId: 1393]

Probab=100.00  E-value=5.6e-66  Score=564.45  Aligned_cols=473  Identities=20%  Similarity=0.232  Sum_probs=391.5

Q ss_pred             CCCcHHHHHHHHHHhCCCCCceeeeccccCCCCCceEEeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEeCCchhHHHHHH
Q 006111           40 DLNTAWDIFSMSVQKYPGNRMLGWRPFVDGKFGPYVWKTYKEVYEEVLQIVSALRASGAEPGCRVGIYGANCPQWVEAME  119 (660)
Q Consensus        40 ~~~ti~~~l~~~a~~~pd~~a~~~~~~~d~~~~~~~~~Ty~ql~~~v~~lA~~L~~~Gl~~gd~V~l~~~n~~e~~~~~l  119 (660)
                      +..||.++|+++|+++||++|+++.   +      +++||+||.++++++|.+|++.|+++||+|+++++|++++++++|
T Consensus        21 ~~~tl~~l~~~~a~~~Pd~~Al~~~---~------~~~Ty~eL~~~v~~lA~~L~~~Gv~~gd~Vai~~~n~~~~v~~~l   91 (514)
T d1amua_          21 RDKTIHQLFEEQVSKRPNNVAIVCE---N------EQLTYHELNVKANQLARIFIEKGIGKDTLVGIMMEKSIDLFIGIL   91 (514)
T ss_dssp             TTCCHHHHHHHHHHHCTTSEEEEET---T------EEEEHHHHHHHHHHHHHHHHHTTCCTTCEEEEECCSSHHHHHHHH
T ss_pred             CCCcHHHHHHHHHHhCCCCeEEEEC---C------eeEcHHHHHHHHHHHHHHHHHcCcCCcCEEEEEeCCCHHHHHHHH
Confidence            6789999999999999999999976   3      689999999999999999999999999999999999999999999


Q ss_pred             HHHhCCCeEEecCCCCChhHHHHHHhcccceEEEEccchhhhhhccccccccCccEEEEecCCcHHHHHHHhhCCcceee
Q 006111          120 ACNALSLICVPLYDTLGPGAVNFILDHAEIDFVFVQDKKVKELLSPDCRSAQRLRVMVCFTSLTAEQKEMAVQTGIKPYS  199 (660)
Q Consensus       120 A~~~~G~~~vpl~~~~~~~~l~~~l~~~~~~~ii~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~  199 (660)
                      ||+++|++++|+++.++.+++..+++.++++++|++......+.......     ........                 
T Consensus        92 a~~~~G~v~v~l~~~~~~~~l~~~l~~~~~~~li~~~~~~~~~~~~~~~~-----~~~~~~~~-----------------  149 (514)
T d1amua_          92 AVLKAGGAYVPIDIEYPKERIQYILDDSQARMLLTQKHLVHLIHNIQFNG-----QVEIFEED-----------------  149 (514)
T ss_dssp             HHHHTTCEEEECCTTSCHHHHHHHHHHHTCSEEEECGGGHHHHTTSCCCS-----EEEECCCS-----------------
T ss_pred             HHHHhCcEEEEeCCCCCHHHHHHHHhccCCcEEEEehhhhhhhhhhcccc-----cccccccc-----------------
Confidence            99999999999999999999999999999999999988776654432211     11111111                 


Q ss_pred             HHHHHhcCccCCccCCCCCCCceEEEEecCCCCCCCceeeecchhHHHHhhhhhhhcccccCCCCCCcEEEEecChhHHH
Q 006111          200 WDEFLHLGKVNEMEILPPQPFNICTIMYTSGTSGDPKGVVLTHETIATFVSGVDLFLDQFEDKMTVDDVYLSFLPLAHIL  279 (660)
Q Consensus       200 ~~~~~~~~~~~~~~~~~~~~~~~~~i~~TSGTTG~pK~v~~th~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~pl~~~~  279 (660)
                          ............+..++++++|+|||||||.||+|.+||.++..........+     .....+++++..|++|..
T Consensus       150 ----~~~~~~~~~~~~p~~~~d~a~i~~TSGTTG~PK~v~~s~~~~~~~~~~~~~~~-----~~~~~d~~l~~~p~~~~~  220 (514)
T d1amua_         150 ----TIKIREGTNLHVPSKSTDLAYVIYTSGTTGNPKGTMLEHKGISNLKVFFENSL-----NVTEKDRIGQFASISFDA  220 (514)
T ss_dssp             ----TTTTSCCSCCCCCCCTTSEEEEEEEC-----CEEEEEESHHHHHHHHHHHHTS-----CCCTTCEEEECSCTTSTH
T ss_pred             ----cccccccccCCCCCCcccceEEEEccCCCCCcccccccccccccccccccccc-----cccccccccceecccccc
Confidence                11111223334456789999999999999999999999999999999888777     889999999999999999


Q ss_pred             HHHHHHHHhhcCcEEEEecC----ChhhHHHHhhhhcCeEEEechHHHHHHHHHHHHHHHhhchHHHHHHHHHHHHHHHH
Q 006111          280 DRVIEEYFFRRGASVGYYHG----DLNALRDDLMELKPTLLAGVPRVFEKIHEGIKKALEELRPLRRRIFDALYKYKLAW  355 (660)
Q Consensus       280 g~~~~l~~l~~G~~~v~~~~----~~~~~~~~i~~~~~t~~~~~p~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  355 (660)
                      ++...+.++..|+++++...    +...+++.+..+.++.+..+|..+.....                           
T Consensus       221 ~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---------------------------  273 (514)
T d1amua_         221 SVWEMFMALLTGASLYIILKDTINDFVKFEQYINQKEITVITLPPTYVVHLDP---------------------------  273 (514)
T ss_dssp             HHHHHHHHHTTTCEEEECCHHHHTCHHHHHHHHHHTTCCEEEECHHHHTTSCT---------------------------
T ss_pred             ccccccccccccccccccccccccchhhhhhhhhhhhcccccceeeecccccc---------------------------
Confidence            99888888989999888763    67788899999999999999876543100                           


Q ss_pred             HhhCCCCCCcchhhhHHHHHHHHHHhCCcEeEEEEccCCCCHHHHHHHHHhcCCceeeecCCCCCCCceecccCCC--cc
Q 006111          356 MNMGYKQREASPLADLLAFRKVKARLGGRLRLVISGGAPLSTEVEEFLRVTCCAFLVQGYGLTETCGPTTVCFPDE--MC  433 (660)
Q Consensus       356 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lr~i~~~G~~l~~~~~~~~~~~~~~~v~~~YG~tE~~~~~~~~~~~~--~~  433 (660)
                                              ..+++++.++++|+.+++++.+++.+  +..+++.||+||++.+++......  ..
T Consensus       274 ------------------------~~~~~l~~~~~~G~~~~~~~~~~~~~--~~~~~~~yG~tE~~~~~~~~~~~~~~~~  327 (514)
T d1amua_         274 ------------------------ERILSIQTLITAGSATSPSLVNKWKE--KVTYINAYGPTETTICATTWVATKETIG  327 (514)
T ss_dssp             ------------------------TTCCSCSEEEEESSCCCHHHHHHHTT--TSEEEEEECCGGGSSCSEEEECCSSCCC
T ss_pred             ------------------------cccccccEEEEecccCCHHHhhhhcc--ceeEEEeeccccCceeeeeccccccccC
Confidence                                    01258999999999999999988765  778999999999999887666543  23


Q ss_pred             ccCccCCCccCeeEEeeecCCCCCCCCCCCCCceEEEccCCcccccCCCchhhhhccc-------CCccccCceEEECCC
Q 006111          434 MVGTAGPVSVYSELRLEEVPEMGYSPLDDPPCGEVCVRGKTLFSGYYKNPDLTRESII-------DGWFHTGDIGQILPN  506 (660)
Q Consensus       434 ~~~~~G~~~~~~~v~ivd~~~~~~~~~~~~~~Gei~v~g~~~~~gy~~~~~~~~~~~~-------~g~~~TGDl~~~~~~  506 (660)
                      ..++.|.+.++..+.+.| +++...+  .|+.|||+|+||.++.||++++..+...|.       +|||+|||+|++|+|
T Consensus       328 ~~~~~~~~~~~~~v~~~d-~~~~~~~--~g~~GEl~v~~~~~~~gY~~~~~~~~~~~~~~~~~~~~~~~~TGD~g~~d~~  404 (514)
T d1amua_         328 HSVPIGAPIQNTQIYIVD-ENLQLKS--VGEAGELCIGGEGLARGYWKRPELTSQKFVDNPFVPGEKLYKTGDQARWLSD  404 (514)
T ss_dssp             SSCCCBEECTTEEEEEEC-TTSCBCC--TTCEEEEEEEETTCCCEETTCHHHHHHHEEECSSSTTSEEEEEEEEEEECTT
T ss_pred             cccccccceeeeeEeeec-ccceecC--CCCeeEEEEccCcccccccccccccceeeEeccccCCCceEEECCEEEECCC
Confidence            346778899999999998 6666444  457999999999999999999999888772       689999999999999


Q ss_pred             CcEEEEeccCCeeEcCCCeeecchhHHHHHhcCcCcceEEEEecCCC---CeEEEEEEcChhhHHHHHHHCCCCCcHHHH
Q 006111          507 GVVKIIDRKKNLIKISQGEYVALEYLENVYCVAPIIEDIWVYGDSLK---SMLVAVVVPCEEDTKKWAYSNGHAGSFLEL  583 (660)
Q Consensus       507 G~l~~~GR~~d~i~~~~G~~v~~~~iE~~l~~~p~V~~~~V~~~~~~---~~~~a~v~~~~~~~~~~~~~~~~~~~~~~~  583 (660)
                      |+|+++||.+|+|++ +|++|+|.+||++|.+||+|.||+|++.+++   ..++|+|+++++.                 
T Consensus       405 G~l~i~GR~~d~i~~-~G~~i~p~~IE~~l~~~~~V~~~~V~~~~~~~~g~~~~a~v~~~~~~-----------------  466 (514)
T d1amua_         405 GNIEYLGRIDNQVKI-RGHRVELEEVESILLKHMYISETAVSVHKDHQEQPYLCAYFVSEKHI-----------------  466 (514)
T ss_dssp             SCEEEEEEGGGEEEE-TTEEEEHHHHHHHHTTSTTEEEEEEEEEECTTSCEEEEEEEEESSCC-----------------
T ss_pred             CcEEEEecccCEEEE-CCEEECHHHHHHHHHhCCCccEEEEEEEECCCCCEEEEEEEEcCCCC-----------------
Confidence            999999999999997 8999999999999999999999999997654   3889999888753                 


Q ss_pred             hccHHHHHHHHHHHHHHHHhCCCCCceeeeEEEEecCCCCCCCCccccccccchHHHHH
Q 006111          584 CSLVQLQNYILSELKNAAERNKLRGFEHIKGVILDPRPFDMERDLVTATLKKKRNKLLI  642 (660)
Q Consensus       584 ~~~~~~~~~~~~~l~~~~~~~~l~~~~~p~~i~~~~~~~~~~~~P~t~~GKv~R~~l~~  642 (660)
                       ..        ++|+++++ .+|+.|++|..|++++      .||+|++|||+|++|++
T Consensus       467 -~~--------~~l~~~~~-~~l~~~~~p~~i~~v~------~lP~t~~GKi~R~~L~~  509 (514)
T d1amua_         467 -PL--------EQLRQFSS-EELPTYMIPSYFIQLD------KMPLTSNGKIDRKQLPE  509 (514)
T ss_dssp             -CH--------HHHHHHHH-HHSCGGGSCSEEEECS------SCCBCTTSSBCGGGSCC
T ss_pred             -CH--------HHHHHHHH-hhCCcccCceEEEEeC------CCCCCCCcChhHHhcCC
Confidence             11        23344443 5689999999999874      46899999999999986

>d1mdba_ e.23.1.1 (A:) Dihydroxybenzoate-AMP ligase DhbE {Bacillus subtilis [TaxId: 1423]}

class: Multi-domain proteins (alpha and beta)
fold: Acetyl-CoA synthetase-like
superfamily: Acetyl-CoA synthetase-like
family: Acetyl-CoA synthetase-like
domain: Dihydroxybenzoate-AMP ligase DhbE
species: Bacillus subtilis [TaxId: 1423]

Probab=100.00  E-value=2.1e-65  Score=562.75  Aligned_cols=499  Identities=18%  Similarity=0.158  Sum_probs=404.9

Q ss_pred             CcHHHHHHHHHHhCCCCCceeeeccccCCCCCceEEeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEeCCchhHHHHHHHH
Q 006111           42 NTAWDIFSMSVQKYPGNRMLGWRPFVDGKFGPYVWKTYKEVYEEVLQIVSALRASGAEPGCRVGIYGANCPQWVEAMEAC  121 (660)
Q Consensus        42 ~ti~~~l~~~a~~~pd~~a~~~~~~~d~~~~~~~~~Ty~ql~~~v~~lA~~L~~~Gl~~gd~V~l~~~n~~e~~~~~lA~  121 (660)
                      .||.++|+++|+++||++|+++.   +      +++||+||.++++++|++|.+.|+++||+|+++++|++++++++|||
T Consensus        25 ~tl~~~l~~~a~~~pd~~Al~~~---~------~~~Ty~el~~~v~~~A~~L~~~Gv~~gd~V~i~~~n~~~~~v~~lA~   95 (536)
T d1mdba_          25 ETFGDLLRDRAAKYGDRIAITCG---N------THWSYRELDTRADRLAAGFQKLGIQQKDRVVVQLPNIKEFFEVIFAL   95 (536)
T ss_dssp             CCHHHHHHHHHHHHTTSEEEEET---T------EEEEHHHHHHHHHHHHHHHHHHTCCTTCEEEECCCSSHHHHHHHHHH
T ss_pred             CCHHHHHHHHHHHCCCCeEEEEC---C------EeEcHHHHHHHHHHHHHHHHHcCcCCcCEEEEEeCCCHHHHHHHHHH
Confidence            69999999999999999999976   4      58999999999999999999999999999999999999999999999


Q ss_pred             HhCCCeEEecCCCCChhHHHHHHhcccceEEEEccchhhhhhcc----ccccccCccEEEEecCCcHHHHHHHhhCCcce
Q 006111          122 NALSLICVPLYDTLGPGAVNFILDHAEIDFVFVQDKKVKELLSP----DCRSAQRLRVMVCFTSLTAEQKEMAVQTGIKP  197 (660)
Q Consensus       122 ~~~G~~~vpl~~~~~~~~l~~~l~~~~~~~ii~~~~~~~~~~~~----~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~  197 (660)
                      +++|++++|++|.++.+++.++|+.++++++++++.........    .......+...+......            ..
T Consensus        96 ~~~G~i~vpl~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------------~~  163 (536)
T d1mdba_          96 FRLGALPVFALPSHRSSEITYFCEFAEAAAYIIPDAYSGFDYRSLARQVQSKLPTLKNIIVAGEAE------------EF  163 (536)
T ss_dssp             HHHTCEEEECCTTCCHHHHHHHHHHTTCSEEEEESEETTEEHHHHHHHHHHHCTTCCCEEEESCCT------------TS
T ss_pred             HHhCcEEEecCCCCCHHHHHHHHHhhccceEeccchhhhhhhhhhhhhhhhccccccceeeeeccc------------cc
Confidence            99999999999999999999999999999999987543321111    011111222222221111            11


Q ss_pred             eeHHHHHhcCccCCccCCCCCCCceEEEEecCCCCCCCceeeecchhHHHHhhhhhhhcccccCCCCCCcEEEEecChhH
Q 006111          198 YSWDEFLHLGKVNEMEILPPQPFNICTIMYTSGTSGDPKGVVLTHETIATFVSGVDLFLDQFEDKMTVDDVYLSFLPLAH  277 (660)
Q Consensus       198 ~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~TSGTTG~pK~v~~th~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~pl~~  277 (660)
                      ..+.++    ........+..++|+++|+|||||||.||+|++||.++...+......+     ++..++++++..|++|
T Consensus       164 ~~~~~~----~~~~~~~~~~~~~d~a~i~~TSGTTG~PKgV~~s~~~~~~~~~~~~~~~-----~~~~~d~~l~~~~~~~  234 (536)
T d1mdba_         164 LPLEDL----HTEPVKLPEVKSSDVAFLQLSGGSTGLSKLIPRTHDDYIYSLKRSVEVC-----WLDHSTVYLAALPMAH  234 (536)
T ss_dssp             EEGGGC----CCCCCCCCCCCTTSEEEEEECCCSSSSCCEEEEEHHHHHHHHHHHHHHH-----TCCTTCEEEECSCTTS
T ss_pred             cchhhc----ccCCcCCCccCccchHHhhhcccccccceeccccccccccccccccccc-----cccccccccccccccc
Confidence            122111    1223334456789999999999999999999999999999999888877     8999999999999999


Q ss_pred             HHHHHH-H-HHHhhcCcEEEEecC-ChhhHHHHhhhhcCeEEEechHHHHHHHHHHHHHHHhhchHHHHHHHHHHHHHHH
Q 006111          278 ILDRVI-E-EYFFRRGASVGYYHG-DLNALRDDLMELKPTLLAGVPRVFEKIHEGIKKALEELRPLRRRIFDALYKYKLA  354 (660)
Q Consensus       278 ~~g~~~-~-l~~l~~G~~~v~~~~-~~~~~~~~i~~~~~t~~~~~p~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~  354 (660)
                      .+++.. . ...+..|.+++..+. ++..++..+.+++++.+..+|..+..+........                    
T Consensus       235 ~~~l~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--------------------  294 (536)
T d1mdba_         235 NYPLSSPGVLGVLYAGGRVVLSPSPSPDDAFPLIEREKVTITALVPPLAMVWMDAASSRR--------------------  294 (536)
T ss_dssp             HHHHHSSHHHHHHHTTCEEEECSSSSHHHHHHHHHHHTCSEEEECHHHHHHHHHHHHHCC--------------------
T ss_pred             ccceeeccccccccccccccccCCCCHHHHHHHHhhhccccccccchhhhhhhhhccccc--------------------
Confidence            999875 3 334555677666654 99999999999999999999999888765322211                    


Q ss_pred             HHhhCCCCCCcchhhhHHHHHHHHHHhCCcEeEEEEccCCCCHHHHHHHHHhcCCceeeecCCCCCCCceecccCCCccc
Q 006111          355 WMNMGYKQREASPLADLLAFRKVKARLGGRLRLVISGGAPLSTEVEEFLRVTCCAFLVQGYGLTETCGPTTVCFPDEMCM  434 (660)
Q Consensus       355 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lr~i~~~G~~l~~~~~~~~~~~~~~~v~~~YG~tE~~~~~~~~~~~~~~~  434 (660)
                                               ...++++.+++||+++++...+++.+.++......|+.+|.+.............
T Consensus       295 -------------------------~~~~~~~~~~~gG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  349 (536)
T d1mdba_         295 -------------------------DDLSSLQVLQVGGAKFSAEAARRVKAVFGCTLQQVFGMAEGLVNYTRLDDPEEII  349 (536)
T ss_dssp             -------------------------CCCTTCCEEEEESSCCCHHHHTTHHHHTCSEEEEEEECTTSCEEECCTTSCHHHH
T ss_pred             -------------------------cccCcceeEEEeccccccccccchhhccCceeeeccccccccccccccccccccc
Confidence                                     1114899999999999999999999999999999999999887776666555555


Q ss_pred             cCccCCCccCeeEEeeecCCCCCCCCCCCCCceEEEccCCcccccCCCchhhhhcc-cCCccccCceEEECCCCcEEEEe
Q 006111          435 VGTAGPVSVYSELRLEEVPEMGYSPLDDPPCGEVCVRGKTLFSGYYKNPDLTRESI-IDGWFHTGDIGQILPNGVVKIID  513 (660)
Q Consensus       435 ~~~~G~~~~~~~v~ivd~~~~~~~~~~~~~~Gei~v~g~~~~~gy~~~~~~~~~~~-~~g~~~TGDl~~~~~~G~l~~~G  513 (660)
                      .+++|.|+++....++..+++.  .++.++.|||+++|+.++.||++++..+...+ .+|||+|||++++++||+|++.|
T Consensus       350 ~~~~g~p~~~~~~~~v~~~~g~--~~~~~~~Gel~v~g~~~~~gY~~~~~~~~~~~~~~~~~~tGD~~~~~~dG~l~~~G  427 (536)
T d1mdba_         350 VNTQGKPMSPYDESRVWDDHDR--DVKPGETGHLLTRGPYTIRGYYKAEEHNAASFTEDGFYRTGDIVRLTRDGYIVVEG  427 (536)
T ss_dssp             HHCCCEESSTTCEEEEECTTSC--BCCTTCCEEEEEECTTSCSSCTTCHHHHHHHBCTTSCEEEEEEEEECTTSCEEEEE
T ss_pred             cCCcccCCCCcceEEEEcCCCC--eecccccceeecCCCccccccccccccccccccccCccccCccccccCCCceecCC
Confidence            6899999876655555525544  44556899999999999999999999888888 78999999999999999999999


Q ss_pred             ccCCeeEcCCCeeecchhHHHHHhcCcCcceEEEEecCCC---CeEEEEEEcChhhHHHHHHHCCCCCcHHHHhccHHHH
Q 006111          514 RKKNLIKISQGEYVALEYLENVYCVAPIIEDIWVYGDSLK---SMLVAVVVPCEEDTKKWAYSNGHAGSFLELCSLVQLQ  590 (660)
Q Consensus       514 R~~d~i~~~~G~~v~~~~iE~~l~~~p~V~~~~V~~~~~~---~~~~a~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  590 (660)
                      |.+|+|++ +|++|+|.+||++|.+||+|.+|+|++.+++   +.++|+|++.++..                 ..    
T Consensus       428 R~~d~i~~-~G~~i~p~~IE~~l~~~p~V~~a~vvg~~~~~~g~~~~a~v~~~~~~~-----------------~~----  485 (536)
T d1mdba_         428 RAKDQINR-GGEKVAAEEVENHLLAHPAVHDAAMVSMPDQFLGERSCVFIIPRDEAP-----------------KA----  485 (536)
T ss_dssp             EGGGCEEC-SSCEECHHHHHHHHTTSTTEEEEEEEEEEETTTEEEEEEEEEESSSCC-----------------CH----
T ss_pred             CcceEEEE-CCEEECHHHHHHHHHhCCCccEEEEEEEEcCCCCeEEEEEEEECCCCC-----------------CH----
Confidence            99999997 8999999999999999999999999986543   37899999876531                 11    


Q ss_pred             HHHHHHHHHHHHhCCCCCceeeeEEEEecCCCCCCCCccccccccchHHHHHHHHHHHH
Q 006111          591 NYILSELKNAAERNKLRGFEHIKGVILDPRPFDMERDLVTATLKKKRNKLLIYYQVEID  649 (660)
Q Consensus       591 ~~~~~~l~~~~~~~~l~~~~~p~~i~~~~~~~~~~~~P~t~~GKv~R~~l~~~~~~~i~  649 (660)
                          ++|+++++++.||.|++|+.|++++      .+|+|++|||+|++|+++|+++|.
T Consensus       486 ----~~l~~~l~~~~l~~~~~P~~i~~v~------~lP~t~~GKi~r~~L~~~~~~~l~  534 (536)
T d1mdba_         486 ----AELKAFLRERGLAAYKIPDRVEFVE------SFPQTGVGKVSKKALREAISEKLL  534 (536)
T ss_dssp             ----HHHHHHHHHTTCCGGGSCSEEEECS------SCCBCTTSCBCHHHHHHHHHHHHH
T ss_pred             ----HHHHHHHHhcCCCcCcCccEEEEEC------CCCcCCCcCccHHHHHHHHHHHHh
Confidence                2344444445799999999999874      468999999999999999988775

>d3cw9a1 e.23.1.1 (A:1-503) 4-chlorobenzoyl CoA ligase {Alcaligenes sp. [TaxId: 512]}

class: Multi-domain proteins (alpha and beta)
fold: Acetyl-CoA synthetase-like
superfamily: Acetyl-CoA synthetase-like
family: Acetyl-CoA synthetase-like
domain: 4-chlorobenzoyl CoA ligase
species: Alcaligenes sp. [TaxId: 512]

Probab=100.00  E-value=2.1e-62  Score=533.75  Aligned_cols=492  Identities=20%  Similarity=0.215  Sum_probs=391.0

Q ss_pred             CCcHHHHHHHHHHhCCCCCceeeeccccCCCCCceEEeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEeCCchhHHHHHHH
Q 006111           41 LNTAWDIFSMSVQKYPGNRMLGWRPFVDGKFGPYVWKTYKEVYEEVLQIVSALRASGAEPGCRVGIYGANCPQWVEAMEA  120 (660)
Q Consensus        41 ~~ti~~~l~~~a~~~pd~~a~~~~~~~d~~~~~~~~~Ty~ql~~~v~~lA~~L~~~Gl~~gd~V~l~~~n~~e~~~~~lA  120 (660)
                      |+||+++|+++|+++||++|+++.   ++.    +++||+||.++++++|++|++.|+++||+|+++++|++++++++||
T Consensus         1 ~~ti~~~l~~~a~~~pd~~al~~~---~~~----~~~Ty~el~~~~~~~a~~L~~~Gv~~gd~V~i~~~n~~~~~~~~lA   73 (503)
T d3cw9a1           1 MQTVNEMLRRAATRAPDHCALAVP---ARG----LRLTHAELRARVEAVAARLHADGLRPQQRVAVVAPNSADVVIAILA   73 (503)
T ss_dssp             CCCHHHHHHHHHHHSTTSEEEEEG---GGT----EEEEHHHHHHHHHHHHHHHHHTTCCTTCEEEEECCSCHHHHHHHHH
T ss_pred             CCCHHHHHHHHHHhCCCCeEEEEC---CCC----cEEeHHHHHHHHHHHHHHHHHcCcCCCCEEEEEeCCCHHHHHHHHH
Confidence            689999999999999999999986   432    6899999999999999999999999999999999999999999999


Q ss_pred             HHhCCCeEEecCCCCChhHHHHHHhcccceEEEEccchhhhhhccccccccCccEEEEecCCcHHHHHHHhhCCcceeeH
Q 006111          121 CNALSLICVPLYDTLGPGAVNFILDHAEIDFVFVQDKKVKELLSPDCRSAQRLRVMVCFTSLTAEQKEMAVQTGIKPYSW  200 (660)
Q Consensus       121 ~~~~G~~~vpl~~~~~~~~l~~~l~~~~~~~ii~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~  200 (660)
                      |+++|++++|+++.++.+++.++++.++++++|++........  .... .....++.                     +
T Consensus        74 ~~~~G~v~vpi~~~~~~~~i~~~l~~~~~~~~i~~~~~~~~~~--~~~~-~~~~~~i~---------------------~  129 (503)
T d3cw9a1          74 LHRLGAVPALLNPRLKSAELAELIKRGEMTAAVIAVGRQVADA--IFQS-GSGARIIF---------------------L  129 (503)
T ss_dssp             HHHHTCEEEEECTTSCHHHHHHHHHHTTCSEEEESSCHHHHHH--HHHT-TCCCEEEE---------------------H
T ss_pred             HHHhCcEEEEeCCCCCHHHHHHHHHhcCCcEEEeecchHHHHH--Hhhh-cccccccc---------------------c
Confidence            9999999999999999999999999999999999876432111  1111 11222222                     2


Q ss_pred             HHHHhcCc----cCCccCCCCCCCceEEEEecCCCCCCCceeeecchhHHHHhhhhhhhcccccCCCCCCcEEEEecChh
Q 006111          201 DEFLHLGK----VNEMEILPPQPFNICTIMYTSGTSGDPKGVVLTHETIATFVSGVDLFLDQFEDKMTVDDVYLSFLPLA  276 (660)
Q Consensus       201 ~~~~~~~~----~~~~~~~~~~~~~~~~i~~TSGTTG~pK~v~~th~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~pl~  276 (660)
                      .++.....    ..........++++++++|||||||.||+|.++|.++...+......+   .......+++++.+|++
T Consensus       130 ~~~~~~~~~~~~~~~~~~~~~~~~~~a~i~~TSGTTG~pK~v~~s~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~p~~  206 (503)
T d3cw9a1         130 GDLVRDGEPYSYGPPIEDPQREPAQPAFIFYTSGTTGLPKAAIIPQRAAESRVLFMSTQV---GLRHGRHNVVLGLMPLY  206 (503)
T ss_dssp             HHHEETTEECCCSCCCCCCCCCTTSEEEEEEECCSSSSCEEEEEEGGGHHHHHHHHHHTS---CCCSSTTCEEEECSCTT
T ss_pred             hhhhhhhcccccCCccccccchhhhhhhhcccccccccccccccccchhhhhhhhccccc---cccccccccccccCccc
Confidence            22222111    122333456789999999999999999999999999998888765544   12456778999999999


Q ss_pred             HHHHHHH-HHHHhhcCcEEEEecC-ChhhHHHHhhhhcCeEEEechHHHHHHHHHHHHHHHhhchHHHHHHHHHHHHHHH
Q 006111          277 HILDRVI-EEYFFRRGASVGYYHG-DLNALRDDLMELKPTLLAGVPRVFEKIHEGIKKALEELRPLRRRIFDALYKYKLA  354 (660)
Q Consensus       277 ~~~g~~~-~l~~l~~G~~~v~~~~-~~~~~~~~i~~~~~t~~~~~p~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~  354 (660)
                      |..+... .+.+...++.+++... ++..+...+..+++++++.+|..+..+..........                  
T Consensus       207 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~------------------  268 (503)
T d3cw9a1         207 HVVGFFAVLVAALALDGTYVVVEEFRPVDALQLVQQEQVTSLFATPTHLDALAAAAAHAGSS------------------  268 (503)
T ss_dssp             SHHHHHTTHHHHHHTTCEEEECSSCCHHHHHHHHHHHTCCEEEECHHHHHHHHHHHHHTCTT------------------
T ss_pred             cccccccccccccccccccccccccChHHhhhhhhhceeecccccccccccccccccccccc------------------
Confidence            8887775 4556667777776665 9999999999999999999999988876543322111                  


Q ss_pred             HHhhCCCCCCcchhhhHHHHHHHHHHhCCcEeEEEEccCCCCHHHHHHHHHhcCCceeeecCCCCCCCceecccCCCccc
Q 006111          355 WMNMGYKQREASPLADLLAFRKVKARLGGRLRLVISGGAPLSTEVEEFLRVTCCAFLVQGYGLTETCGPTTVCFPDEMCM  434 (660)
Q Consensus       355 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lr~i~~~G~~l~~~~~~~~~~~~~~~v~~~YG~tE~~~~~~~~~~~~~~~  434 (660)
                                               ...++||.+++||++++++....+...++..+.+.||+||++..+..........
T Consensus       269 -------------------------~~~~~Lr~i~~gG~~~~~~~~~~~~~~~~~~~~~~yg~~e~~~~~~~~~~~~~~~  323 (503)
T d3cw9a1         269 -------------------------LKLDSLRHVTFAGATMPDAVLETVHQHLPGEKVNIYGTTEAMNSLYMRQPKTGTE  323 (503)
T ss_dssp             -------------------------CCCTTCCEEEECSSCCCHHHHHHHHHHCCSEEEEEEEETTTEEEEEEESCSSSSE
T ss_pred             -------------------------ccccceEEEEeccccccccccccccccccccccccccccccceeeeecccccccc
Confidence                                     1125899999999999999999999999999999999999998877666554333


Q ss_pred             cCccCCCccCeeEEeeecCCCCCCCCCCCCCceEEEcc-CCcccccCCCchhhhhcccCCccccCceEEECCCCcEEEEe
Q 006111          435 VGTAGPVSVYSELRLEEVPEMGYSPLDDPPCGEVCVRG-KTLFSGYYKNPDLTRESIIDGWFHTGDIGQILPNGVVKIID  513 (660)
Q Consensus       435 ~~~~G~~~~~~~v~ivd~~~~~~~~~~~~~~Gei~v~g-~~~~~gy~~~~~~~~~~~~~g~~~TGDl~~~~~~G~l~~~G  513 (660)
                       ...+.+.+.....+.+ ..+.  .+..|+.|++++.+ +....+|++++..+.+.|.+|||+|||+|++|+||.|+++|
T Consensus       324 -~~~~~~~~~~~~~~~~-~~~~--~~~~g~~g~~~~~~~~~~~~~~~~~~~~t~~~~~~g~~~TgD~g~~~~dG~l~~~G  399 (503)
T d3cw9a1         324 -MAPGFFSEVRIVRIGG-GVDE--IVANGEEGELIVAASDSAFVGYLNQPQATAEKLQDGWYRTSDVAVWTPEGTVRILG  399 (503)
T ss_dssp             -EBCCTTCCEEEECTTS-CTTC--BCCTTCCEEEEEECCTTSCCCBTTCHHHHHHHEETTEEEEEEEEEECTTSCEEEEE
T ss_pred             -ccccccccceeeeeec-ccCc--ccCCCccccccccccccccccccCChhhhHHHhcCCceecccccccccCCeEEeCC
Confidence             3444444444444444 3333  34456788887776 55567889999999999999999999999999999999999


Q ss_pred             ccCCeeEcCCCeeecchhHHHHHhcCcCcceEEEEecCCC---CeEEEEEEcChhhHHHHHHHCCCCCcHHHHhccHHHH
Q 006111          514 RKKNLIKISQGEYVALEYLENVYCVAPIIEDIWVYGDSLK---SMLVAVVVPCEEDTKKWAYSNGHAGSFLELCSLVQLQ  590 (660)
Q Consensus       514 R~~d~i~~~~G~~v~~~~iE~~l~~~p~V~~~~V~~~~~~---~~~~a~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  590 (660)
                      |.||+|++ +|++|+|.+||++|.+||+|.||+|++.+++   +.++|+|+++.+.        ..        .     
T Consensus       400 R~~d~ik~-~G~~v~~~~IE~~l~~~p~V~~~~v~~~~~~~~g~~~~a~v~~~~~~--------~~--------~-----  457 (503)
T d3cw9a1         400 RVDDMIIS-GGENIHPSEIERVLGTAPGVTEVVVIGLADQRWGQSVTACVVPRLGE--------TL--------S-----  457 (503)
T ss_dssp             ESSCCEEE-TTEEECHHHHHHHHTTSTTEEEEEEEEEEETTTEEEEEEEEEECTTC--------CC--------C-----
T ss_pred             CcCCeEEE-CCEEECHHHHHHHHHhCCCccEEEEEEEECCCCCeEEEEEEEeCCCC--------CC--------C-----
Confidence            99999997 7999999999999999999999999997654   4799999988653        11        1     


Q ss_pred             HHHHHHHHHHHHhCCCCCceeeeEEEEecCCCCCCCCccccccccchHHHHHHH
Q 006111          591 NYILSELKNAAERNKLRGFEHIKGVILDPRPFDMERDLVTATLKKKRNKLLIYY  644 (660)
Q Consensus       591 ~~~~~~l~~~~~~~~l~~~~~p~~i~~~~~~~~~~~~P~t~~GKv~R~~l~~~~  644 (660)
                         .++|++++++.+||.|++|+.|++++      +||+|++|||+|++|++++
T Consensus       458 ---~~~l~~~~~~~~l~~~~~P~~i~~v~------~~P~t~~GKi~R~~L~~~~  502 (503)
T d3cw9a1         458 ---ADALDTFCRSSELADFKRPKRYFILD------QLPKNALNKVLRRQLVQQV  502 (503)
T ss_dssp             ---HHHHHHHHHHSSSCGGGSCSEEEECS------CCCBCTTSCBCHHHHHHHH
T ss_pred             ---HHHHHHHHHhcCCCCCCCccEEEEEC------CCCcCCCcCccHHHHHHhc
Confidence               23344455457899999999888864      4699999999999999875