BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 006113
(660 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|1W2Z|A Chain A, Psao And Xenon
pdb|1W2Z|B Chain B, Psao And Xenon
pdb|1W2Z|C Chain C, Psao And Xenon
pdb|1W2Z|D Chain D, Psao And Xenon
Length = 649
Score = 766 bits (1977), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 355/639 (55%), Positives = 465/639 (72%), Gaps = 2/639 (0%)
Query: 21 PSHQYHPLDSLTPSEFTQIQSIVTKAYPKSTYNLTFQYVGLKEPTKQTVLSWLRNETTTN 80
P H HPLD LT EF +Q+IV YP S L F Y+GL +P K VL + + T +
Sbjct: 3 PLHVQHPLDPLTKEEFLAVQTIVQNKYPISNNRLAFHYIGLDDPEKDHVLRYETHPTLVS 62
Query: 81 PPRQAFVVARIDHQTHEIIVDLSLQGITSKKTYNGYGYPLLTGEEQEDANKLASTYPLFV 140
PR+ FVVA I+ QTHEI+++L ++ I S +NGYG+P+L+ +EQ A KL YP F+
Sbjct: 63 IPRKIFVVAIINSQTHEILINLRIRSIVSDNIHNGYGFPILSVDEQSLAIKLPLKYPPFI 122
Query: 141 ASISKRGLKLEEVVCGSFTVGWFGEERKNKRIVKMMCYYLDGTLNADMRPIEGITMTVDL 200
S+ KRGL L E+VC SFT+GWFGEE KN R V++ C+ + T+N +RPI GIT+ DL
Sbjct: 123 DSVKKRGLNLSEIVCSSFTMGWFGEE-KNVRTVRLDCFMKESTVNIYVRPITGITIVADL 181
Query: 201 DEMKIIQFRDRIIVPVPKSDGTEYRESKLKPPFRPSLKRTTVVQPDGPSFNIVGSQIRWA 260
D MKI+++ DR I VP ++ TEY+ SK PPF P T QP GP F I G + WA
Sbjct: 182 DLMKIVEYHDRDIEAVPTAENTEYQVSKQSPPFGPKQHSLTSHQPQGPGFQINGHSVSWA 241
Query: 261 DWEFHLSFDARAGMIISVASIYDPEKQQSRQVLYKGHVSELFVPYMDLTEEWYYRSFFDV 320
+W+FH+ FD RAG++IS+ASIYD EK +SR+VLYKG++SELFVPY D TEE+Y+++FFD
Sbjct: 242 NWKFHIGFDVRAGIVISLASIYDLEKHKSRRVLYKGYISELFVPYQDPTEEFYFKTFFDS 301
Query: 321 GEYGYGLSSLPLEPLRDCPPNAVFMDAYFAKNDGMPLKMPNVFCIFERYAGDVMWRHTEA 380
GE+G+GLS++ L P RDCPP+A F+D Y +G P+ + N C+FE+Y G++MWRHTE
Sbjct: 302 GEFGFGLSTVSLIPNRDCPPHAQFIDTYVHSANGTPILLKNAICVFEQY-GNIMWRHTEN 360
Query: 381 TDPEKLIREVRPEVSLVVRTVSTVGNYDYINDWEFKQSGSIKVTVGLTGMLEVRGTNYTH 440
P + I E R EV+L+VRT+ TVGN D + DWEFK SGSIK ++ L+G+LE++GTN H
Sbjct: 361 GIPNESIEESRTEVNLIVRTIVTVGNXDNVIDWEFKASGSIKPSIALSGILEIKGTNIKH 420
Query: 441 KDQIEEDVYGTLIAENTIGVRHDHFLTYRLDLDVDGDANSFVKSKLRTVRVNDHGSPRKS 500
KD+I+ED++G L++ N+IG+ HDHF Y LD D+DG NSF K+ L+TVR+ D S RKS
Sbjct: 421 KDEIKEDLHGKLVSANSIGIYHDHFYIYYLDFDIDGTHNSFEKTSLKTVRIKDGSSKRKS 480
Query: 501 YWTVDRETARTESAARIKLGSEPVDLLFVNPNKKTKMGNLIGYRLVPYGVVGPLLSDDDY 560
YWT + +TA+TES A+I +G P +L+ VNPN KT +GN +GYRL+P PLL++DDY
Sbjct: 481 YWTTETQTAKTESDAKITIGLAPAELVVVNPNIKTAVGNEVGYRLIPAIPAHPLLTEDDY 540
Query: 561 PQIRAAFTNYNAWVTAYNISEKWAGGLYADQSRGDDTLSVWSKRNRSIENKDIVLWYTLG 620
PQIR AFTNYN WVTAYN +EKWAGGLY D SRGDDTL+VW+K+NR I NKDIV+W+ +G
Sbjct: 541 PQIRGAFTNYNVWVTAYNRTEKWAGGLYVDHSRGDDTLAVWTKQNREIVNKDIVMWHVVG 600
Query: 621 FHHVPCQEDFPVMPTFNGGFELRPSNFFESNPVLKVVPP 659
HHVP QEDFP+MP + FELRP+NFFE NPVLK + P
Sbjct: 601 IHHVPAQEDFPIMPLLSTSFELRPTNFFERNPVLKTLSP 639
>pdb|1KSI|A Chain A, Crystal Structure Of A Eukaryotic (Pea Seedling)
Copper-Containing Amine Oxidase At 2.2a Resolution
pdb|1KSI|B Chain B, Crystal Structure Of A Eukaryotic (Pea Seedling)
Copper-Containing Amine Oxidase At 2.2a Resolution
Length = 642
Score = 763 bits (1969), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 353/634 (55%), Positives = 463/634 (73%), Gaps = 2/634 (0%)
Query: 26 HPLDSLTPSEFTQIQSIVTKAYPKSTYNLTFQYVGLKEPTKQTVLSWLRNETTTNPPRQA 85
HPLD LT EF +Q+IV YP S L F Y+GL +P K VL + + T + PR+
Sbjct: 3 HPLDPLTKEEFLAVQTIVQNKYPISNNRLAFHYIGLDDPEKDHVLRYETHPTLVSIPRKI 62
Query: 86 FVVARIDHQTHEIIVDLSLQGITSKKTYNGYGYPLLTGEEQEDANKLASTYPLFVASISK 145
FVVA I+ QTHEI+++L ++ I S +NGYG+P+L+ +EQ A KL YP F+ S+ K
Sbjct: 63 FVVAIINSQTHEILINLRIRSIVSDNIHNGYGFPILSVDEQSLAIKLPLKYPPFIDSVKK 122
Query: 146 RGLKLEEVVCGSFTVGWFGEERKNKRIVKMMCYYLDGTLNADMRPIEGITMTVDLDEMKI 205
RGL L E+VC SFT+GWFGEE KN R V++ C+ + T+N +RPI GIT+ DLD MKI
Sbjct: 123 RGLNLSEIVCSSFTMGWFGEE-KNVRTVRLDCFMKESTVNIYVRPITGITIVADLDLMKI 181
Query: 206 IQFRDRIIVPVPKSDGTEYRESKLKPPFRPSLKRTTVVQPDGPSFNIVGSQIRWADWEFH 265
+++ DR I VP ++ TEY+ SK PPF P T QP GP F I G + WA+W+FH
Sbjct: 182 VEYHDRDIEAVPTAENTEYQVSKQSPPFGPKQHSLTSHQPQGPGFQINGHSVSWANWKFH 241
Query: 266 LSFDARAGMIISVASIYDPEKQQSRQVLYKGHVSELFVPYMDLTEEWYYRSFFDVGEYGY 325
+ FD RAG++IS+ASIYD EK +SR+VLYKG++SELFVPY D TEE+Y+++FFD GE+G+
Sbjct: 242 IGFDVRAGIVISLASIYDLEKHKSRRVLYKGYISELFVPYQDPTEEFYFKTFFDSGEFGF 301
Query: 326 GLSSLPLEPLRDCPPNAVFMDAYFAKNDGMPLKMPNVFCIFERYAGDVMWRHTEATDPEK 385
GLS++ L P RDCPP+A F+D Y +G P+ + N C+FE+Y G++MWRHTE P +
Sbjct: 302 GLSTVSLIPNRDCPPHAQFIDTYVHSANGTPILLKNAICVFEQY-GNIMWRHTENGIPNE 360
Query: 386 LIREVRPEVSLVVRTVSTVGNYDYINDWEFKQSGSIKVTVGLTGMLEVRGTNYTHKDQIE 445
I E R EV+L+VRT+ TVGN D + DWEFK SGSIK ++ L+G+LE++GTN HKD+I+
Sbjct: 361 SIEESRTEVNLIVRTIVTVGNXDNVIDWEFKASGSIKPSIALSGILEIKGTNIKHKDEIK 420
Query: 446 EDVYGTLIAENTIGVRHDHFLTYRLDLDVDGDANSFVKSKLRTVRVNDHGSPRKSYWTVD 505
ED++G L++ N+IG+ HDHF Y LD D+DG NSF K+ L+TVR+ D S RKSYWT +
Sbjct: 421 EDLHGKLVSANSIGIYHDHFYIYYLDFDIDGTHNSFEKTSLKTVRIKDGSSKRKSYWTTE 480
Query: 506 RETARTESAARIKLGSEPVDLLFVNPNKKTKMGNLIGYRLVPYGVVGPLLSDDDYPQIRA 565
+TA+TES A+I +G P +L+ VNPN KT +GN +GYRL+P PLL++DDYPQIR
Sbjct: 481 TQTAKTESDAKITIGLAPAELVVVNPNIKTAVGNEVGYRLIPAIPAHPLLTEDDYPQIRG 540
Query: 566 AFTNYNAWVTAYNISEKWAGGLYADQSRGDDTLSVWSKRNRSIENKDIVLWYTLGFHHVP 625
AFTNYN WVTAYN +EKWAGGLY D SRGDDTL+VW+K+NR I NKDIV+W+ +G HHVP
Sbjct: 541 AFTNYNVWVTAYNRTEKWAGGLYVDHSRGDDTLAVWTKQNREIVNKDIVMWHVVGIHHVP 600
Query: 626 CQEDFPVMPTFNGGFELRPSNFFESNPVLKVVPP 659
QEDFP+MP + FELRP+NFFE NPVLK + P
Sbjct: 601 AQEDFPIMPLLSTSFELRPTNFFERNPVLKTLSP 634
>pdb|2WGQ|A Chain A, Zinc Substituted E Coli Copper Amine Oxidase, A Model For
The Precursor For 2,4,5-Trihydroxyphenylalaninequinone
Formation
pdb|2WGQ|B Chain B, Zinc Substituted E Coli Copper Amine Oxidase, A Model For
The Precursor For 2,4,5-Trihydroxyphenylalaninequinone
Formation
Length = 727
Score = 346 bits (887), Expect = 3e-95, Method: Compositional matrix adjust.
Identities = 216/643 (33%), Positives = 337/643 (52%), Gaps = 30/643 (4%)
Query: 26 HPLDSLTPSEFTQIQSIVTKAYPKSTYNLTFQYVGLKEPTKQTVLSWLRNETTTNPPRQA 85
HPL++LT E Q IV KA N F + L P K+ V ++ + PR+A
Sbjct: 94 HPLNALTADEIKQAVEIV-KASADFKPNTRFTEISLLPPDKEAVWAFALENKPVDQPRKA 152
Query: 86 FVVARIDHQTHEIIVDLSLQGITS-KKTYNGYGYPLLTGEEQEDANKLASTYPLFVASIS 144
V+ E +VDL + S + + +G LL ++ + + F A++
Sbjct: 153 DVIMLDGKHIIEAVVDLQNNKLLSWQPIKDAHGMVLL--DDFASVQNIINNSEEFAAAVK 210
Query: 145 KRGL-KLEEVVCGSFTVGWFGEE---RKNKRIVKMMCYYLDGTLNADMRPIEGITMTVDL 200
KRG+ ++V+ TVG+F + +++ R++K++ Y G N PIE + VDL
Sbjct: 211 KRGITDAKKVITTPLTVGYFDGKDGLKQDARLLKVISYLDVGDGNYWAHPIENLVAVVDL 270
Query: 201 DEMKIIQFRDRIIVPVPKSDGTEYRESKLKPPFRPSLKRTTVVQPDGPSFNIVGSQIRWA 260
++ KI++ + +VPVP + R + P++K +++P+G ++ I G I W
Sbjct: 271 EQKKIVKIEEGPVVPVPMT----ARPFDGRDRVAPAVKPMQIIEPEGKNYTITGDMIHWR 326
Query: 261 DWEFHLSFDARAGMIISVASIYDPEKQQSRQVLYKGHVSELFVPYMDLTEEWYYRSFFDV 320
+W+FHLS ++R G +IS + D R+V+Y+G + + VPY D WY++++ D
Sbjct: 327 NWDFHLSMNSRVGPMISTVTYND--NGTKRKVMYEGSLGGMIVPYGDPDIGWYFKAYLDS 384
Query: 321 GEYGYGLSSLPLEPLRDCPPNAVFMDAYFAKNDGMPLKMPNVFCIFERYAGDVMWRHTEA 380
G+YG G + P+ +D P NAV ++ A G+P+++P +FERYAG ++H E
Sbjct: 385 GDYGMGTLTSPIARGKDAPSNAVLLNETIADYTGVPMEIPRAIAVFERYAGP-EYKHQEM 443
Query: 381 TDPEKLIREVRPEVSLVVRTVSTVGNYDYINDWEFKQSGSIKVTVGLTGMLEVRG--TNY 438
P + R E LVVR +STVGNYDYI DW F ++G+I + G TG+ V+G
Sbjct: 444 GQPN--VSTERRE--LVVRWISTVGNYDYIFDWIFHENGTIGIDAGATGIEAVKGVKAKT 499
Query: 439 THKDQIEEDV-YGTLIAENTIGVRHDHFLTYRLDLDVDGDANSFVKSKLRTVRVNDHGSP 497
H + ++D YGTLI N +G H H +RLDLDVDG+ NS V V+ N G P
Sbjct: 500 MHDETAKDDTRYGTLIDHNIVGTTHQHIYNFRLDLDVDGENNSLVAMD-PVVKPNTAGGP 558
Query: 498 RKSYWTVDRETARTESAARIKLGSEPVDLLFVNPNKKTKMGNLIGYRLVPYG------VV 551
R S V++ E A K + LL NPNK+ +MGN + Y+++PY
Sbjct: 559 RTSTMQVNQYNIGNEQDAAQKFDPGTIRLL-SNPNKENRMGNPVSYQIIPYAGGTHPVAK 617
Query: 552 GPLLSDDDYPQIRAAFTNYNAWVTAYNISEKWAGGLYADQSRGDDTLSVWSKRNRSIENK 611
G + D++ R +F + WVT Y+ E++ G Y ++S D L +SK N S++N
Sbjct: 618 GAQFAPDEWIYHRLSFMDKQLWVTRYHPGERFPEGKYPNRSTHDTGLGQYSKDNESLDNT 677
Query: 612 DIVLWYTLGFHHVPCQEDFPVMPTFNGGFELRPSNFFESNPVL 654
D V+W T G HV E++P+MPT L+P NFF+ P L
Sbjct: 678 DAVVWMTTGTTHVARAEEWPIMPTEWVHTLLKPWNFFDETPTL 720
>pdb|1OAC|A Chain A, Crystal Structure Of A Quinoenzyme: Copper Amine Oxidase
Of Escherichia Coli At 2 Angstroems Resolution
pdb|1OAC|B Chain B, Crystal Structure Of A Quinoenzyme: Copper Amine Oxidase
Of Escherichia Coli At 2 Angstroems Resolution
pdb|1SPU|A Chain A, Structure Of Oxidoreductase
pdb|1SPU|B Chain B, Structure Of Oxidoreductase
pdb|1D6U|A Chain A, Crystal Structure Of E. Coli Amine Oxidase Anaerobically
Reduced With Beta-Phenylethylamine
pdb|1D6U|B Chain B, Crystal Structure Of E. Coli Amine Oxidase Anaerobically
Reduced With Beta-Phenylethylamine
pdb|1D6Y|A Chain A, Crystal Structure Of E. Coli Copper-Containing Amine
Oxidase Anaerobically Reduced With Beta-Phenylethylamine
And Complexed With Nitric Oxide.
pdb|1D6Y|B Chain B, Crystal Structure Of E. Coli Copper-Containing Amine
Oxidase Anaerobically Reduced With Beta-Phenylethylamine
And Complexed With Nitric Oxide.
pdb|1D6Z|A Chain A, Crystal Structure Of The Aerobically Freeze Trapped
Rate-determining Catalytic Intermediate Of E. Coli
Copper-containing Amine Oxidase.
pdb|1D6Z|B Chain B, Crystal Structure Of The Aerobically Freeze Trapped
Rate-determining Catalytic Intermediate Of E. Coli
Copper-containing Amine Oxidase.
pdb|1DYU|A Chain A, The Active Site Base Controls Cofactor Reactivity In
Escherichia Coli Amine Oxidase: X-Ray Crystallographic
Studies With Mutational Variants.
pdb|1DYU|B Chain B, The Active Site Base Controls Cofactor Reactivity In
Escherichia Coli Amine Oxidase: X-Ray Crystallographic
Studies With Mutational Variants.
pdb|1LVN|A Chain A, Crystal Structure Of E. Coli Amine Oxidase Complexed With
Tranylcypromine
pdb|1LVN|B Chain B, Crystal Structure Of E. Coli Amine Oxidase Complexed With
Tranylcypromine
pdb|2W0Q|A Chain A, E. Coli Copper Amine Oxidase In Complex With Xenon
pdb|2W0Q|B Chain B, E. Coli Copper Amine Oxidase In Complex With Xenon
pdb|2WO0|A Chain A, Edta Treated E. Coli Copper Amine Oxidase
pdb|2WO0|B Chain B, Edta Treated E. Coli Copper Amine Oxidase
pdb|2WOF|A Chain A, Edta Treated E. Coli Copper Amine Oxidase
pdb|2WOF|B Chain B, Edta Treated E. Coli Copper Amine Oxidase
pdb|2WOH|A Chain A, Strontium Soaked E. Coli Copper Amine Oxidase
pdb|2WOH|B Chain B, Strontium Soaked E. Coli Copper Amine Oxidase
Length = 727
Score = 343 bits (880), Expect = 2e-94, Method: Compositional matrix adjust.
Identities = 215/643 (33%), Positives = 336/643 (52%), Gaps = 30/643 (4%)
Query: 26 HPLDSLTPSEFTQIQSIVTKAYPKSTYNLTFQYVGLKEPTKQTVLSWLRNETTTNPPRQA 85
HPL++LT E Q IV KA N F + L P K+ V ++ + PR+A
Sbjct: 94 HPLNALTADEIKQAVEIV-KASADFKPNTRFTEISLLPPDKEAVWAFALENKPVDQPRKA 152
Query: 86 FVVARIDHQTHEIIVDLSLQGITS-KKTYNGYGYPLLTGEEQEDANKLASTYPLFVASIS 144
V+ E +VDL + S + + +G LL ++ + + F A++
Sbjct: 153 DVIMLDGKHIIEAVVDLQNNKLLSWQPIKDAHGMVLL--DDFASVQNIINNSEEFAAAVK 210
Query: 145 KRGL-KLEEVVCGSFTVGWFGEE---RKNKRIVKMMCYYLDGTLNADMRPIEGITMTVDL 200
KRG+ ++V+ TVG+F + +++ R++K++ Y G N PIE + VDL
Sbjct: 211 KRGITDAKKVITTPLTVGYFDGKDGLKQDARLLKVISYLDVGDGNYWAHPIENLVAVVDL 270
Query: 201 DEMKIIQFRDRIIVPVPKSDGTEYRESKLKPPFRPSLKRTTVVQPDGPSFNIVGSQIRWA 260
++ KI++ + +VPVP + R + P++K +++P+G ++ I G I W
Sbjct: 271 EQKKIVKIEEGPVVPVPMT----ARPFDGRDRVAPAVKPMQIIEPEGKNYTITGDMIHWR 326
Query: 261 DWEFHLSFDARAGMIISVASIYDPEKQQSRQVLYKGHVSELFVPYMDLTEEWYYRSFFDV 320
+W+FHLS ++R G +IS + D R+V+Y+G + + VPY D WY++++ D
Sbjct: 327 NWDFHLSMNSRVGPMISTVTYND--NGTKRKVMYEGSLGGMIVPYGDPDIGWYFKAYLDS 384
Query: 321 GEYGYGLSSLPLEPLRDCPPNAVFMDAYFAKNDGMPLKMPNVFCIFERYAGDVMWRHTEA 380
G+YG G + P+ +D P NAV ++ A G+P+++P +FERYAG ++H E
Sbjct: 385 GDYGMGTLTSPIARGKDAPSNAVLLNETIADYTGVPMEIPRAIAVFERYAGP-EYKHQEM 443
Query: 381 TDPEKLIREVRPEVSLVVRTVSTVGNYDYINDWEFKQSGSIKVTVGLTGMLEVRG--TNY 438
P + R E LVVR +STVGN DYI DW F ++G+I + G TG+ V+G
Sbjct: 444 GQPN--VSTERRE--LVVRWISTVGNXDYIFDWIFHENGTIGIDAGATGIEAVKGVKAKT 499
Query: 439 THKDQIEEDV-YGTLIAENTIGVRHDHFLTYRLDLDVDGDANSFVKSKLRTVRVNDHGSP 497
H + ++D YGTLI N +G H H +RLDLDVDG+ NS V V+ N G P
Sbjct: 500 MHDETAKDDTRYGTLIDHNIVGTTHQHIYNFRLDLDVDGENNSLVAMD-PVVKPNTAGGP 558
Query: 498 RKSYWTVDRETARTESAARIKLGSEPVDLLFVNPNKKTKMGNLIGYRLVPYG------VV 551
R S V++ E A K + LL NPNK+ +MGN + Y+++PY
Sbjct: 559 RTSTMQVNQYNIGNEQDAAQKFDPGTIRLL-SNPNKENRMGNPVSYQIIPYAGGTHPVAK 617
Query: 552 GPLLSDDDYPQIRAAFTNYNAWVTAYNISEKWAGGLYADQSRGDDTLSVWSKRNRSIENK 611
G + D++ R +F + WVT Y+ E++ G Y ++S D L +SK N S++N
Sbjct: 618 GAQFAPDEWIYHRLSFMDKQLWVTRYHPGERFPEGKYPNRSTHDTGLGQYSKDNESLDNT 677
Query: 612 DIVLWYTLGFHHVPCQEDFPVMPTFNGGFELRPSNFFESNPVL 654
D V+W T G HV E++P+MPT L+P NFF+ P L
Sbjct: 678 DAVVWMTTGTTHVARAEEWPIMPTEWVHTLLKPWNFFDETPTL 720
>pdb|1JRQ|A Chain A, X-Ray Structure Analysis Of The Role Of The Conserved
Tyrosine-369 In Active Site Of E. Coli Amine Oxidase
pdb|1JRQ|B Chain B, X-Ray Structure Analysis Of The Role Of The Conserved
Tyrosine-369 In Active Site Of E. Coli Amine Oxidase
Length = 727
Score = 342 bits (876), Expect = 5e-94, Method: Compositional matrix adjust.
Identities = 214/643 (33%), Positives = 336/643 (52%), Gaps = 30/643 (4%)
Query: 26 HPLDSLTPSEFTQIQSIVTKAYPKSTYNLTFQYVGLKEPTKQTVLSWLRNETTTNPPRQA 85
HPL++LT E Q IV KA N F + L P K+ V ++ + PR+A
Sbjct: 94 HPLNALTADEIKQAVEIV-KASADFKPNTRFTEISLLPPDKEAVWAFALENKPVDQPRKA 152
Query: 86 FVVARIDHQTHEIIVDLSLQGITS-KKTYNGYGYPLLTGEEQEDANKLASTYPLFVASIS 144
V+ E +VDL + S + + +G LL ++ + + F A++
Sbjct: 153 DVIMLDGKHIIEAVVDLQNNKLLSWQPIKDAHGMVLL--DDFASVQNIINNSEEFAAAVK 210
Query: 145 KRGL-KLEEVVCGSFTVGWFGEE---RKNKRIVKMMCYYLDGTLNADMRPIEGITMTVDL 200
KRG+ ++V+ TVG+F + +++ R++K++ Y G N PIE + VDL
Sbjct: 211 KRGITDAKKVITTPLTVGYFDGKDGLKQDARLLKVISYLDVGDGNYWAHPIENLVAVVDL 270
Query: 201 DEMKIIQFRDRIIVPVPKSDGTEYRESKLKPPFRPSLKRTTVVQPDGPSFNIVGSQIRWA 260
++ KI++ + +VPVP + R + P++K +++P+G ++ I G I W
Sbjct: 271 EQKKIVKIEEGPVVPVPMT----ARPFDGRDRVAPAVKPMQIIEPEGKNYTITGDMIHWR 326
Query: 261 DWEFHLSFDARAGMIISVASIYDPEKQQSRQVLYKGHVSELFVPYMDLTEEWYYRSFFDV 320
+W+FHLS ++R G +IS + D R+V+Y+G + + VP+ D WY++++ D
Sbjct: 327 NWDFHLSMNSRVGPMISTVTYND--NGTKRKVMYEGSLGGMIVPFGDPDIGWYFKAYLDS 384
Query: 321 GEYGYGLSSLPLEPLRDCPPNAVFMDAYFAKNDGMPLKMPNVFCIFERYAGDVMWRHTEA 380
G+YG G + P+ +D P NAV ++ A G+P+++P +FERYAG ++H E
Sbjct: 385 GDYGMGTLTSPIARGKDAPSNAVLLNETIADYTGVPMEIPRAIAVFERYAGP-EYKHQEM 443
Query: 381 TDPEKLIREVRPEVSLVVRTVSTVGNYDYINDWEFKQSGSIKVTVGLTGMLEVRG--TNY 438
P + R E LVVR +STVGN DYI DW F ++G+I + G TG+ V+G
Sbjct: 444 GQPN--VSTERRE--LVVRWISTVGNXDYIFDWIFHENGTIGIDAGATGIEAVKGVKAKT 499
Query: 439 THKDQIEEDV-YGTLIAENTIGVRHDHFLTYRLDLDVDGDANSFVKSKLRTVRVNDHGSP 497
H + ++D YGTLI N +G H H +RLDLDVDG+ NS V V+ N G P
Sbjct: 500 MHDETAKDDTRYGTLIDHNIVGTTHQHIYNFRLDLDVDGENNSLVAMD-PVVKPNTAGGP 558
Query: 498 RKSYWTVDRETARTESAARIKLGSEPVDLLFVNPNKKTKMGNLIGYRLVPYG------VV 551
R S V++ E A K + LL NPNK+ +MGN + Y+++PY
Sbjct: 559 RTSTMQVNQYNIGNEQDAAQKFDPGTIRLL-SNPNKENRMGNPVSYQIIPYAGGTHPVAK 617
Query: 552 GPLLSDDDYPQIRAAFTNYNAWVTAYNISEKWAGGLYADQSRGDDTLSVWSKRNRSIENK 611
G + D++ R +F + WVT Y+ E++ G Y ++S D L +SK N S++N
Sbjct: 618 GAQFAPDEWIYHRLSFMDKQLWVTRYHPGERFPEGKYPNRSTHDTGLGQYSKDNESLDNT 677
Query: 612 DIVLWYTLGFHHVPCQEDFPVMPTFNGGFELRPSNFFESNPVL 654
D V+W T G HV E++P+MPT L+P NFF+ P L
Sbjct: 678 DAVVWMTTGTTHVARAEEWPIMPTEWVHTLLKPWNFFDETPTL 720
>pdb|1QAL|A Chain A, The Active Site Base Controls Cofactor Reactivity In
Escherichia Coli Amine Oxidase : X-Ray Crystallographic
Studies With Mutational Variants
pdb|1QAL|B Chain B, The Active Site Base Controls Cofactor Reactivity In
Escherichia Coli Amine Oxidase : X-Ray Crystallographic
Studies With Mutational Variants
Length = 721
Score = 341 bits (875), Expect = 6e-94, Method: Compositional matrix adjust.
Identities = 214/643 (33%), Positives = 336/643 (52%), Gaps = 30/643 (4%)
Query: 26 HPLDSLTPSEFTQIQSIVTKAYPKSTYNLTFQYVGLKEPTKQTVLSWLRNETTTNPPRQA 85
HPL++LT E Q IV KA N F + L P K+ V ++ + PR+A
Sbjct: 89 HPLNALTADEIKQAVEIV-KASADFKPNTRFTEISLLPPDKEAVWAFALENKPVDQPRKA 147
Query: 86 FVVARIDHQTHEIIVDLSLQGITS-KKTYNGYGYPLLTGEEQEDANKLASTYPLFVASIS 144
V+ E +VDL + S + + +G LL ++ + + F A++
Sbjct: 148 DVIMLDGKHIIEAVVDLQNNKLLSWQPIKDAHGMVLL--DDFASVQNIINNSEEFAAAVK 205
Query: 145 KRGL-KLEEVVCGSFTVGWFGEE---RKNKRIVKMMCYYLDGTLNADMRPIEGITMTVDL 200
KRG+ ++V+ TVG+F + +++ R++K++ Y G N PIE + VDL
Sbjct: 206 KRGITDAKKVITTPLTVGYFDGKDGLKQDARLLKVISYLDVGDGNYWAHPIENLVAVVDL 265
Query: 201 DEMKIIQFRDRIIVPVPKSDGTEYRESKLKPPFRPSLKRTTVVQPDGPSFNIVGSQIRWA 260
++ KI++ + +VPVP + R + P++K +++P+G ++ I G I W
Sbjct: 266 EQKKIVKIEEGPVVPVPMT----ARPFDGRDRVAPAVKPMQIIEPEGKNYTITGDMIHWR 321
Query: 261 DWEFHLSFDARAGMIISVASIYDPEKQQSRQVLYKGHVSELFVPYMDLTEEWYYRSFFDV 320
+W+FHLS ++R G +IS + D R+V+Y+G + + VPY D WY++++ +
Sbjct: 322 NWDFHLSMNSRVGPMISTVTYND--NGTKRKVMYEGSLGGMIVPYGDPDIGWYFKAYLNS 379
Query: 321 GEYGYGLSSLPLEPLRDCPPNAVFMDAYFAKNDGMPLKMPNVFCIFERYAGDVMWRHTEA 380
G+YG G + P+ +D P NAV ++ A G+P+++P +FERYAG ++H E
Sbjct: 380 GDYGMGTLTSPIARGKDAPSNAVLLNETIADYTGVPMEIPRAIAVFERYAGP-EYKHQEM 438
Query: 381 TDPEKLIREVRPEVSLVVRTVSTVGNYDYINDWEFKQSGSIKVTVGLTGMLEVRG--TNY 438
P + R E LVVR +STVGN DYI DW F ++G+I + G TG+ V+G
Sbjct: 439 GQPN--VSTERRE--LVVRWISTVGNXDYIFDWIFHENGTIGIDAGATGIEAVKGVKAKT 494
Query: 439 THKDQIEEDV-YGTLIAENTIGVRHDHFLTYRLDLDVDGDANSFVKSKLRTVRVNDHGSP 497
H + ++D YGTLI N +G H H +RLDLDVDG+ NS V V+ N G P
Sbjct: 495 MHDETAKDDTRYGTLIDHNIVGTTHQHIYNFRLDLDVDGENNSLVAMD-PVVKPNTAGGP 553
Query: 498 RKSYWTVDRETARTESAARIKLGSEPVDLLFVNPNKKTKMGNLIGYRLVPYG------VV 551
R S V++ E A K + LL NPNK+ +MGN + Y+++PY
Sbjct: 554 RTSTMQVNQYNIGNEQDAAQKFDPGTIRLL-SNPNKENRMGNPVSYQIIPYAGGTHPVAK 612
Query: 552 GPLLSDDDYPQIRAAFTNYNAWVTAYNISEKWAGGLYADQSRGDDTLSVWSKRNRSIENK 611
G + D++ R +F + WVT Y+ E++ G Y ++S D L +SK N S++N
Sbjct: 613 GAQFAPDEWIYHRLSFMDKQLWVTRYHPGERFPEGKYPNRSTHDTGLGQYSKDNESLDNT 672
Query: 612 DIVLWYTLGFHHVPCQEDFPVMPTFNGGFELRPSNFFESNPVL 654
D V+W T G HV E++P+MPT L+P NFF+ P L
Sbjct: 673 DAVVWMTTGTTHVARAEEWPIMPTEWVHTLLKPWNFFDETPTL 715
>pdb|1QAF|A Chain A, The Active Site Base Controls Cofactor Reactivity In
Escherichia Coli Amine Oxidase : X-Ray Crystallographic
Studies With Mutational Variants
pdb|1QAF|B Chain B, The Active Site Base Controls Cofactor Reactivity In
Escherichia Coli Amine Oxidase : X-Ray Crystallographic
Studies With Mutational Variants
Length = 721
Score = 341 bits (875), Expect = 7e-94, Method: Compositional matrix adjust.
Identities = 214/643 (33%), Positives = 336/643 (52%), Gaps = 30/643 (4%)
Query: 26 HPLDSLTPSEFTQIQSIVTKAYPKSTYNLTFQYVGLKEPTKQTVLSWLRNETTTNPPRQA 85
HPL++LT E Q IV KA N F + L P K+ V ++ + PR+A
Sbjct: 89 HPLNALTADEIKQAVEIV-KASADFKPNTRFTEISLLPPDKEAVWAFALENKPVDQPRKA 147
Query: 86 FVVARIDHQTHEIIVDLSLQGITS-KKTYNGYGYPLLTGEEQEDANKLASTYPLFVASIS 144
V+ E +VDL + S + + +G LL ++ + + F A++
Sbjct: 148 DVIMLDGKHIIEAVVDLQNNKLLSWQPIKDAHGMVLL--DDFASVQNIINNSEEFAAAVK 205
Query: 145 KRGL-KLEEVVCGSFTVGWFGEE---RKNKRIVKMMCYYLDGTLNADMRPIEGITMTVDL 200
KRG+ ++V+ TVG+F + +++ R++K++ Y G N PIE + VDL
Sbjct: 206 KRGITDAKKVITTPLTVGYFDGKDGLKQDARLLKVISYLDVGDGNYWAHPIENLVAVVDL 265
Query: 201 DEMKIIQFRDRIIVPVPKSDGTEYRESKLKPPFRPSLKRTTVVQPDGPSFNIVGSQIRWA 260
++ KI++ + +VPVP + R + P++K +++P+G ++ I G I W
Sbjct: 266 EQKKIVKIEEGPVVPVPMT----ARPFDGRDRVAPAVKPMQIIEPEGKNYTITGDMIHWR 321
Query: 261 DWEFHLSFDARAGMIISVASIYDPEKQQSRQVLYKGHVSELFVPYMDLTEEWYYRSFFDV 320
+W+FHLS ++R G +IS + D R+V+Y+G + + VPY D WY++++ +
Sbjct: 322 NWDFHLSMNSRVGPMISTVTYND--NGTKRKVMYEGSLGGMIVPYGDPDIGWYFKAYLES 379
Query: 321 GEYGYGLSSLPLEPLRDCPPNAVFMDAYFAKNDGMPLKMPNVFCIFERYAGDVMWRHTEA 380
G+YG G + P+ +D P NAV ++ A G+P+++P +FERYAG ++H E
Sbjct: 380 GDYGMGTLTSPIARGKDAPSNAVLLNETIADYTGVPMEIPRAIAVFERYAGP-EYKHQEM 438
Query: 381 TDPEKLIREVRPEVSLVVRTVSTVGNYDYINDWEFKQSGSIKVTVGLTGMLEVRG--TNY 438
P + R E LVVR +STVGN DYI DW F ++G+I + G TG+ V+G
Sbjct: 439 GQPN--VSTERRE--LVVRWISTVGNXDYIFDWIFHENGTIGIDAGATGIEAVKGVKAKT 494
Query: 439 THKDQIEEDV-YGTLIAENTIGVRHDHFLTYRLDLDVDGDANSFVKSKLRTVRVNDHGSP 497
H + ++D YGTLI N +G H H +RLDLDVDG+ NS V V+ N G P
Sbjct: 495 MHDETAKDDTRYGTLIDHNIVGTTHQHIYNFRLDLDVDGENNSLVAMD-PVVKPNTAGGP 553
Query: 498 RKSYWTVDRETARTESAARIKLGSEPVDLLFVNPNKKTKMGNLIGYRLVPYG------VV 551
R S V++ E A K + LL NPNK+ +MGN + Y+++PY
Sbjct: 554 RTSTMQVNQYNIGNEQDAAQKFDPGTIRLL-SNPNKENRMGNPVSYQIIPYAGGTHPVAK 612
Query: 552 GPLLSDDDYPQIRAAFTNYNAWVTAYNISEKWAGGLYADQSRGDDTLSVWSKRNRSIENK 611
G + D++ R +F + WVT Y+ E++ G Y ++S D L +SK N S++N
Sbjct: 613 GAQFAPDEWIYHRLSFMDKQLWVTRYHPGERFPEGKYPNRSTHDTGLGQYSKDNESLDNT 672
Query: 612 DIVLWYTLGFHHVPCQEDFPVMPTFNGGFELRPSNFFESNPVL 654
D V+W T G HV E++P+MPT L+P NFF+ P L
Sbjct: 673 DAVVWMTTGTTHVARAEEWPIMPTEWVHTLLKPWNFFDETPTL 715
>pdb|1QAK|A Chain A, The Active Site Base Controls Cofactor Reactivity In
Escherichia Coli Amine Oxidase : X-ray Crystallographic
Studies With Mutational Variants
pdb|1QAK|B Chain B, The Active Site Base Controls Cofactor Reactivity In
Escherichia Coli Amine Oxidase : X-ray Crystallographic
Studies With Mutational Variants
Length = 722
Score = 340 bits (872), Expect = 2e-93, Method: Compositional matrix adjust.
Identities = 214/643 (33%), Positives = 335/643 (52%), Gaps = 30/643 (4%)
Query: 26 HPLDSLTPSEFTQIQSIVTKAYPKSTYNLTFQYVGLKEPTKQTVLSWLRNETTTNPPRQA 85
HPL++LT E Q IV KA N F + L P K+ V ++ + PR+A
Sbjct: 89 HPLNALTADEIKQAVEIV-KASADFKPNTRFTEISLLPPDKEAVWAFALENKPVDQPRKA 147
Query: 86 FVVARIDHQTHEIIVDLSLQGITS-KKTYNGYGYPLLTGEEQEDANKLASTYPLFVASIS 144
V+ E +VDL + S + + +G LL ++ + + F A++
Sbjct: 148 DVIMLDGKHIIEAVVDLQNNKLLSWQPIKDAHGMVLL--DDFASVQNIINNSEEFAAAVK 205
Query: 145 KRGL-KLEEVVCGSFTVGWFGEE---RKNKRIVKMMCYYLDGTLNADMRPIEGITMTVDL 200
KRG+ ++V+ TVG+F + +++ R++K++ Y G N PIE + VDL
Sbjct: 206 KRGITDAKKVITTPLTVGYFDGKDGLKQDARLLKVISYLDVGDGNYWAHPIENLVAVVDL 265
Query: 201 DEMKIIQFRDRIIVPVPKSDGTEYRESKLKPPFRPSLKRTTVVQPDGPSFNIVGSQIRWA 260
++ KI++ + +VPVP + R + P++K +++P+G ++ I G I W
Sbjct: 266 EQKKIVKIEEGPVVPVPMT----ARPFDGRDRVAPAVKPMQIIEPEGKNYTITGDMIHWR 321
Query: 261 DWEFHLSFDARAGMIISVASIYDPEKQQSRQVLYKGHVSELFVPYMDLTEEWYYRSFFDV 320
+W+FHLS ++R G +IS + D R+V+Y+G + + VPY D WY++++
Sbjct: 322 NWDFHLSMNSRVGPMISTVTYND--NGTKRKVMYEGSLGGMIVPYGDPDIGWYFKAYLAS 379
Query: 321 GEYGYGLSSLPLEPLRDCPPNAVFMDAYFAKNDGMPLKMPNVFCIFERYAGDVMWRHTEA 380
G+YG G + P+ +D P NAV ++ A G+P+++P +FERYAG ++H E
Sbjct: 380 GDYGMGTLTSPIARGKDAPSNAVLLNETIADYTGVPMEIPRAIAVFERYAGP-EYKHQEM 438
Query: 381 TDPEKLIREVRPEVSLVVRTVSTVGNYDYINDWEFKQSGSIKVTVGLTGMLEVRG--TNY 438
P + R E LVVR +STVGN DYI DW F ++G+I + G TG+ V+G
Sbjct: 439 GQPN--VSTERRE--LVVRWISTVGNXDYIFDWIFHENGTIGIDAGATGIEAVKGVKAKT 494
Query: 439 THKDQIEEDV-YGTLIAENTIGVRHDHFLTYRLDLDVDGDANSFVKSKLRTVRVNDHGSP 497
H + ++D YGTLI N +G H H +RLDLDVDG+ NS V V+ N G P
Sbjct: 495 MHDETAKDDTRYGTLIDHNIVGTTHQHIYNFRLDLDVDGENNSLVAMD-PVVKPNTAGGP 553
Query: 498 RKSYWTVDRETARTESAARIKLGSEPVDLLFVNPNKKTKMGNLIGYRLVPYG------VV 551
R S V++ E A K + LL NPNK+ +MGN + Y+++PY
Sbjct: 554 RTSTMQVNQYNIGNEQDAAQKFDPGTIRLL-SNPNKENRMGNPVSYQIIPYAGGTHPVAK 612
Query: 552 GPLLSDDDYPQIRAAFTNYNAWVTAYNISEKWAGGLYADQSRGDDTLSVWSKRNRSIENK 611
G + D++ R +F + WVT Y+ E++ G Y ++S D L +SK N S++N
Sbjct: 613 GAQFAPDEWIYHRLSFMDKQLWVTRYHPGERFPEGKYPNRSTHDTGLGQYSKDNESLDNT 672
Query: 612 DIVLWYTLGFHHVPCQEDFPVMPTFNGGFELRPSNFFESNPVL 654
D V+W T G HV E++P+MPT L+P NFF+ P L
Sbjct: 673 DAVVWMTTGTTHVARAEEWPIMPTEWVHTLLKPWNFFDETPTL 715
>pdb|3LOY|A Chain A, Crystal Structure Of A Copper-Containing Benzylamine
Oxidase From Hansenula Polymorpha
pdb|3LOY|B Chain B, Crystal Structure Of A Copper-Containing Benzylamine
Oxidase From Hansenula Polymorpha
pdb|3LOY|C Chain C, Crystal Structure Of A Copper-Containing Benzylamine
Oxidase From Hansenula Polymorpha
Length = 633
Score = 221 bits (562), Expect = 1e-57, Method: Compositional matrix adjust.
Identities = 192/661 (29%), Positives = 306/661 (46%), Gaps = 63/661 (9%)
Query: 26 HPLDSLTPSEFTQIQSIVTKAYPKSTYNLTFQYVGLKEPTKQTVLSWLRNETTTNP---- 81
HP D ++ +E Q+ S + K K F + +P K+ ++ +L E T P
Sbjct: 2 HPYDPISDAEL-QLTSQLIKDATKGPERPHFIQIDRLDPPKKDMIRYLEAERTGKPLPHI 60
Query: 82 PRQAFVVARIDHQTHEIIVDLSL-QGITSKKTYNGYGYPLLTGEEQEDANKLASTYPLFV 140
R +V I ++ +V++S IT++K G PL+ E+ ++ +LA+T+P+
Sbjct: 61 SRMTYVYYYIGLDFYKALVNVSYGHIITNQKQPKGVIGPLI-AEDIQEIEELATTHPIVK 119
Query: 141 ASISKRGLKLE-EVVCGSFTVGWF-GEERKNKRIVKMMCY-YLDGTLNADMRPIEGITMT 197
A I K L VVC W G + K R++ + CY YL + +
Sbjct: 120 AEIEKLKLPPHVRVVCDP----WMNGTDSKEDRML-IQCYMYLASAAHPESNHYSLPLKF 174
Query: 198 VDLDEMKIIQFRDRIIVPVPKSDGTEYRESKLKPPF---RPSLKRTTVV--------QPD 246
+ E +F +P + ++ + PF P L T+V QP+
Sbjct: 175 SPVFECLTKKFVRMDYLPGGADETVTETQAWDEFPFVEYHPDLNGETIVPLKPLIVQQPE 234
Query: 247 GPSFNIVGSQIRWADWEFHLSFDARAGMIISVASIYDPEKQQSRQVLYKGHVSELFVPYM 306
GPSFN+ G +I W WEF + R G +IYD + R V+Y+ +SE+ VPY
Sbjct: 235 GPSFNVDGHKISWQGWEFFVIPTVREGF-----AIYDIHFK-GRSVVYRLSLSEMTVPYG 288
Query: 307 DLTEEWYYRSFFDVGEYGYGLSSLPLEPLRDCPPNAVFMDAYFAKNDGMPLKMPNVFCIF 366
D ++ + FD+G+ G+G + L DC +MD +G + +PN C+
Sbjct: 289 DPRAPFHRKQAFDLGDCGFGATGNSLALGCDCLGVIKYMDCRRVNTNGDSVLIPNTVCLH 348
Query: 367 ERYAGDVMWRHTEATDPEKLIREVRPEVSLVVRTVSTVGNYDYINDWEFKQSGSIKVTVG 426
E+ G ++++HT +I R VV+T++TV N +Y+ + F Q+G I++ V
Sbjct: 349 EQDGG-LLYKHTNYRTNVPVIARRR---EFVVQTIATVANXEYMLNIIFDQAGEIRIHVR 404
Query: 427 LTGMLEVRGTNYTHKDQIEEDV---YGTLIAENTIGVRHDHFLTYRLDLDVDGDANSFVK 483
TG+L +++DV +GT + + H H L++R+D VDG N+ V
Sbjct: 405 ATGILSTM--------PLDKDVTVPWGTNVGPRVMAAYHQHMLSFRIDPAVDGYENTVVF 456
Query: 484 SKLRTVRVNDHGSPRKSYWTVDRETARTESAARIKLGSEPV---DLLFVNPNKKTKMGNL 540
+ + N +P + V T RT + P +N NK N
Sbjct: 457 DDVIRMEKNTKLNP----YNVGFVTERTVVEKPGYVEQSPFTNRSYKIINENKI----NP 508
Query: 541 IGYRLVPYGVVGP----LLSDDD-YPQIRAAFTNYNAWVTAYNISEKWAGGLYADQSRGD 595
I + V Y ++ P LL+D+D Y RA F WVT Y +E +A G + +QS+ D
Sbjct: 509 ISKKPVAYKIMMPARQMLLADEDSYNNKRAQFATQQVWVTKYRDNELYAAGEFTNQSQTD 568
Query: 596 DTLSVWSKRNRSIENKDIVLWYTLGFHHVPCQEDFPVMPTFNGGFELRPSNFFESNPVLK 655
L VW++R+ ++ N + V+W TLGF H+P EDFPVMP L P FF+ NP L
Sbjct: 569 TGLGVWARRDENVRNDNPVVWATLGFTHIPRVEDFPVMPVEAHEIALVPFGFFDKNPALS 628
Query: 656 V 656
V
Sbjct: 629 V 629
>pdb|1EKM|A Chain A, Crystal Structure At 2.5 A Resolution Of Zinc-Substituted
Copper Amine Oxidase Of Hansenula Polymorpha Expressed
In Escherichia Coli
pdb|1EKM|B Chain B, Crystal Structure At 2.5 A Resolution Of Zinc-Substituted
Copper Amine Oxidase Of Hansenula Polymorpha Expressed
In Escherichia Coli
pdb|1EKM|C Chain C, Crystal Structure At 2.5 A Resolution Of Zinc-Substituted
Copper Amine Oxidase Of Hansenula Polymorpha Expressed
In Escherichia Coli
Length = 656
Score = 210 bits (534), Expect = 2e-54, Method: Compositional matrix adjust.
Identities = 172/665 (25%), Positives = 289/665 (43%), Gaps = 50/665 (7%)
Query: 21 PSHQYHPLDSLTPSEFTQIQSIVTKAYPKSTYNLTFQYVGLKEPTKQTVLSWLRNETTTN 80
P+ HPLD L+ +E + V + + ++F V L+EP ++ + W + +
Sbjct: 2 PARPAHPLDPLSTAEIKAATNTVKSYF--AGKKISFNTVTLREPARKAYIQW-KEQGGPL 58
Query: 81 PPRQAFVVARIDHQ--THEIIVDLSLQGITSKKTYNGYGYPLLTGEEQEDANKLASTYPL 138
PPR A+ V + E +VDL+ + + P+LT E+ ++ P
Sbjct: 59 PPRLAYYVILEAGKPGVKEGLVDLASLSVIETRALETV-QPILTVEDLCSTEEVIRNDPA 117
Query: 139 FVASISKRGL---KLEEVVCGSFTVGWFGEERKNKRIVKMMCYYLDGTLNADMRPIEGIT 195
+ G+ ++ +V C +T+G+ KR+ + + YY ++
Sbjct: 118 VIEQCVLSGIPANEMHKVYCDPWTIGYDERWGTGKRLQQALVYYRSDEDDSQYSHPLDFC 177
Query: 196 MTVDLDEMKIIQFRDRIIVPVPKSDGTEYRESKLKP--------PFRPSLKRTTVVQPDG 247
VD +E K+I I +P + ++++ + P RP V QP+G
Sbjct: 178 PIVDTEEKKVI----FIDIPNRRRKVSKHKHANFYPKHMIEKVGAMRPEAPPINVTQPEG 233
Query: 248 PSFNIVGSQIRWADWEFHLSFDARAGMIISVASIYDPEKQQSRQVLYKGHVSELFVPYMD 307
SF + G+ + W++++FH+ F+ R G+++S S D R + ++ +SE+ VPY
Sbjct: 234 VSFKMTGNVMEWSNFKFHIGFNYREGIVLSDVSYND--HGNVRPIFHRISLSEMIVPYGS 291
Query: 308 LTEEWYYRSFFDVGEYGYGLSSLPLEPLRDCPPNAVFMDAYFAKNDGMPLKMPNVFCIFE 367
+ D+GEYG G + PL DC ++DA+F+ G P+ + N CI E
Sbjct: 292 PEFPHQRKHALDIGEYGAGYMTNPLSLGCDCKGVIHYLDAHFSDRAGDPITVKNAVCIHE 351
Query: 368 RYAGDVMWRHTEATDPEKLIREVRPEVSLVVRTVSTVGNYDYINDWEFKQSGSIKVTVGL 427
G ++++H++ D V LVV + T NY+Y W F Q G+I++ + L
Sbjct: 352 EDDG-LLFKHSDFRD-NFATSLVTRATKLVVSQIFTAANYEYCLYWVFMQDGAIRLDIRL 409
Query: 428 TGMLEVRGTNYTHKDQIEEDVYGTLIAENTIGVRHDHFLTYRLDLDVDGDANSFVKSKLR 487
TG+L Y D E +GT + N H H + R+D +DGD NS +
Sbjct: 410 TGILNT----YILGDDEEAGPWGTRVYPNVNAHNHQHLFSLRIDPRIDGDGNSAAACDAK 465
Query: 488 T----------VRVNDHGSPRKSYWTVDRETARTESAARIKLGSEPVDLLFVNPNKKTKM 537
+ + N S + ++ TV ESA D+ NPNK
Sbjct: 466 SSPYPLGSPENMYGNAFYSEKTTFKTVKDSLTNYESAT-----GRSWDIF--NPNKVNPY 518
Query: 538 -GNLIGYRLVPYGVVGPLLSDDDYPQIRAAFTNYNAWVTAYNISEKWAGGLYADQSRGDD 596
G Y+LV L + RA + +++ V Y + + G + Q GD
Sbjct: 519 SGKPPSYKLVSTQCPPLLAKEGSLVAKRAPWASHSVNVVPYKDNRLYPSGDHVPQWSGDG 578
Query: 597 T--LSVW-SKRNRSIENKDIVLWYTLGFHHVPCQEDFPVMPTFNGGFELRPSNFFESNPV 653
+ W + +I+N DI+ ++T G H P EDFP+MP LRP +FF NP
Sbjct: 579 VRGMREWIGDGSENIDNTDILFFHTFGITHFPAPEDFPLMPAEPITLMLRPRHFFTENPG 638
Query: 654 LKVVP 658
L + P
Sbjct: 639 LDIQP 643
>pdb|1IVU|A Chain A, Crystal Structure Of Copper Amine Oxidase From
Arthrobacter Globiformis: Initial Intermediate In
Topaquinone Biogenesis
pdb|1IVU|B Chain B, Crystal Structure Of Copper Amine Oxidase From
Arthrobacter Globiformis: Initial Intermediate In
Topaquinone Biogenesis
pdb|1WMP|A Chain A, Crystal Structure Of Amine Oxidase Complexed With Cobalt
Ion
pdb|1WMP|B Chain B, Crystal Structure Of Amine Oxidase Complexed With Cobalt
Ion
pdb|1AVK|A Chain A, Crystal Structures Of The Copper-Containing Amine Oxidase
From Arthrobacter Globiformis In The Holo-And Apo-Forms:
Implications For The Biogenesis Of Topa Quinone
Length = 638
Score = 209 bits (531), Expect = 5e-54, Method: Compositional matrix adjust.
Identities = 147/532 (27%), Positives = 253/532 (47%), Gaps = 22/532 (4%)
Query: 131 KLASTYPLFVASISKRGLKLEEVVCGSFTVGWFG-EERKNKRIVKMMCYYLDGTLN-ADM 188
+L +T ++ +++ R L + +V + G F E + +RI++ + + D + A
Sbjct: 110 QLLATDERWLKALAARNLDVSKVRVAPLSAGVFEYAEERGRRILRGLAFVQDFPEDSAWA 169
Query: 189 RPIEGITMTVDLDEMKIIQFRDRIIVPVPKSDGTEYRESKLKPPFRPSLKRTTVVQPDGP 248
P++G+ VD+ ++ + D + PVP G Y + +L P R + K ++ QP+GP
Sbjct: 170 HPVDGLVAYVDVVSKEVTRVIDTGVFPVPAEHGN-YTDPELTGPLRTTQKPISITQPEGP 228
Query: 249 SFNIVG-SQIRWADWEFHLSFDARAGMIISVASIYDPEKQQSRQVLYKGHVSELFVPYMD 307
SF + G + I W W + FD R G+++ + D ++ R ++ + ++E+ VPY D
Sbjct: 229 SFTVTGGNHIEWEKWSLDVGFDVREGVVLHNIAFRDGDRL--RPIINRASIAEMVVPYGD 286
Query: 308 LTEEWYYRSFFDVGEYGYGLSSLPLEPLRDCPPNAVFMDAYFAKNDGMPLKMPNVFCIFE 367
+ ++++FD GEY G + LE DC + ++ + G P ++ N C+ E
Sbjct: 287 PSPIRSWQNYFDTGEYLVGQYANSLELGCDCLGDITYLSPVISDAFGNPREIRNGICMHE 346
Query: 368 RYAGDVMWRHTEATDPEKLIREVRPEVSLVVRTVSTVGNYDYINDWEFKQSGSIKVTVGL 427
G ++ +H+ D I R +V+ +T+GNYDY W G+I+
Sbjct: 347 EDWG-ILAKHS---DLWSGINYTRRNRRMVISFFTTIGNYDYGFYWYLYLDGTIEFEAKA 402
Query: 428 TGMLEVRGTNYTHKDQIEEDVYGTLIAENTIGVRHDHFLTYRLDLDVDGDANSFVKSKLR 487
TG++ D I + +A H H + RLD+ +DG N V+ +
Sbjct: 403 TGVVFTSAFPEGGSDNISQ------LAPGLGAPFHQHIFSARLDMAIDGFTNR-VEEEDV 455
Query: 488 TVRVNDHGSPRKSYWTVDRETARTES-AARIKLGSEPVDLLFVNPNKKTKMGNLIGYRLV 546
+ G+ R + ++ R ES A R + NP K ++ +GY+L
Sbjct: 456 VRQTMGPGNERGNAFSRKRTVLTRESEAVREADARTGRTWIISNPESKNRLNEPVGYKLH 515
Query: 547 PYGVVGPLLSDDDYPQI--RAAFTNYNAWVTAYNISEKWAGGLYADQSRGDDTLSVWSKR 604
+ P L D I RAAF + WVT Y E++ G + +Q G L + +
Sbjct: 516 AHNQ--PTLLADPGSSIARRAAFATKDLWVTRYADDERYPTGDFVNQHSGGAGLPSYIAQ 573
Query: 605 NRSIENKDIVLWYTLGFHHVPCQEDFPVMPTFNGGFELRPSNFFESNPVLKV 656
+R I+ +DIV+W+T G H P ED+P+MP GF+LRP FF+ +PVL V
Sbjct: 574 DRDIDGQDIVVWHTFGLTHFPRVEDWPIMPVDTVGFKLRPEGFFDRSPVLDV 625
>pdb|3SX1|A Chain A, Hansenula Polymorpha Copper Amine Oxidase-1 In Its Apo
Form
pdb|3SX1|B Chain B, Hansenula Polymorpha Copper Amine Oxidase-1 In Its Apo
Form
pdb|3SX1|C Chain C, Hansenula Polymorpha Copper Amine Oxidase-1 In Its Apo
Form
pdb|3SXX|A Chain A, Hansenula Polymorpha Copper Amine Oxidase-1 In Complex
With Co(ii)
pdb|3SXX|B Chain B, Hansenula Polymorpha Copper Amine Oxidase-1 In Complex
With Co(ii)
pdb|3SXX|C Chain C, Hansenula Polymorpha Copper Amine Oxidase-1 In Complex
With Co(ii)
pdb|3SXX|D Chain D, Hansenula Polymorpha Copper Amine Oxidase-1 In Complex
With Co(ii)
pdb|3SXX|E Chain E, Hansenula Polymorpha Copper Amine Oxidase-1 In Complex
With Co(ii)
pdb|3SXX|F Chain F, Hansenula Polymorpha Copper Amine Oxidase-1 In Complex
With Co(ii)
pdb|3T0U|A Chain A, Hansenula Polymorpha Copper Amine Oxidase-1 In Complex
With Cu(i)
pdb|3T0U|B Chain B, Hansenula Polymorpha Copper Amine Oxidase-1 In Complex
With Cu(i)
pdb|3T0U|C Chain C, Hansenula Polymorpha Copper Amine Oxidase-1 In Complex
With Cu(i)
Length = 692
Score = 208 bits (530), Expect = 7e-54, Method: Compositional matrix adjust.
Identities = 171/660 (25%), Positives = 287/660 (43%), Gaps = 50/660 (7%)
Query: 26 HPLDSLTPSEFTQIQSIVTKAYPKSTYNLTFQYVGLKEPTKQTVLSWLRNETTTNPPRQA 85
HPLD L+ +E + V + + ++F V L+EP ++ + W + + PPR A
Sbjct: 23 HPLDPLSTAEIKAATNTVKSYF--AGKKISFNTVTLREPARKAYIQW-KEQGGPLPPRLA 79
Query: 86 FVVARIDHQ--THEIIVDLSLQGITSKKTYNGYGYPLLTGEEQEDANKLASTYPLFVASI 143
+ V + E +VDL+ + + P+LT E+ ++ P +
Sbjct: 80 YYVILEAGKPGVKEGLVDLASLSVIETRALETV-QPILTVEDLCSTEEVIRNDPAVIEQC 138
Query: 144 SKRGL---KLEEVVCGSFTVGWFGEERKNKRIVKMMCYYLDGTLNADMRPIEGITMTVDL 200
G+ ++ +V C +T+G+ KR+ + + YY ++ VD
Sbjct: 139 VLSGIPANEMHKVYCDPWTIGYDERWGTGKRLQQALVYYRSDEDDSQYSHPLDFCPIVDT 198
Query: 201 DEMKIIQFRDRIIVPVPKSDGTEYRESKLKP--------PFRPSLKRTTVVQPDGPSFNI 252
+E K+I I +P + ++++ + P RP V QP+G SF +
Sbjct: 199 EEKKVI----FIDIPNRRRKVSKHKHANFYPKHMIEKVGAMRPEAPPINVTQPEGVSFKM 254
Query: 253 VGSQIRWADWEFHLSFDARAGMIISVASIYDPEKQQSRQVLYKGHVSELFVPYMDLTEEW 312
G+ + W++++FH+ F+ R G+++S S D R + ++ +SE+ VPY
Sbjct: 255 TGNVMEWSNFKFHIGFNYREGIVLSDVSYND--HGNVRPIFHRISLSEMIVPYGSPEFPH 312
Query: 313 YYRSFFDVGEYGYGLSSLPLEPLRDCPPNAVFMDAYFAKNDGMPLKMPNVFCIFERYAGD 372
+ D+GEYG G + PL DC ++DA+F+ G P+ + N CI E G
Sbjct: 313 QRKHALDIGEYGAGYMTNPLSLGCDCKGVIHYLDAHFSDRAGDPITVKNAVCIHEEDDG- 371
Query: 373 VMWRHTEATDPEKLIREVRPEVSLVVRTVSTVGNYDYINDWEFKQSGSIKVTVGLTGMLE 432
++++H++ D R LVV + T NY+Y W F Q G+I++ + LTG+L
Sbjct: 372 LLFKHSDFRDNFATSLVTR-ATKLVVSQIFTAANYEYCLYWVFMQDGAIRLDIRLTGILN 430
Query: 433 VRGTNYTHKDQIEEDVYGTLIAENTIGVRHDHFLTYRLDLDVDGDANSFVKSKLRT---- 488
Y D E +GT + N H H + R+D +DGD NS ++
Sbjct: 431 T----YILGDDEEAGPWGTRVYPNVNAHNHQHLFSLRIDPRIDGDGNSAAACDAKSSPYP 486
Query: 489 ------VRVNDHGSPRKSYWTVDRETARTESAARIKLGSEPVDLLFVNPNKKTKM-GNLI 541
+ N S + ++ TV ESA D+ NPNK G
Sbjct: 487 LGSPENMYGNAFYSEKTTFKTVKDSLTNYESAT-----GRSWDIF--NPNKVNPYSGKPP 539
Query: 542 GYRLVPYGVVGPLLSDDDYPQIRAAFTNYNAWVTAYNISEKWAGGLYADQSRGDDT--LS 599
Y+LV L + RA + +++ V Y + + G + Q GD +
Sbjct: 540 SYKLVSTQCPPLLAKEGSLVAKRAPWASHSVNVVPYKDNRLYPSGDHVPQWSGDGVRGMR 599
Query: 600 VW-SKRNRSIENKDIVLWYTLGFHHVPCQEDFPVMPTFNGGFELRPSNFFESNPVLKVVP 658
W + +I+N DI+ ++T G H P EDFP+MP LRP +FF NP L + P
Sbjct: 600 EWIGDGSENIDNTDILFFHTFGITHFPAPEDFPLMPAEPITLMLRPRHFFTENPGLDIQP 659
>pdb|1A2V|A Chain A, Copper Amine Oxidase From Hansenula Polymorpha
pdb|1A2V|B Chain B, Copper Amine Oxidase From Hansenula Polymorpha
pdb|1A2V|C Chain C, Copper Amine Oxidase From Hansenula Polymorpha
pdb|1A2V|D Chain D, Copper Amine Oxidase From Hansenula Polymorpha
pdb|1A2V|E Chain E, Copper Amine Oxidase From Hansenula Polymorpha
pdb|1A2V|F Chain F, Copper Amine Oxidase From Hansenula Polymorpha
Length = 655
Score = 207 bits (527), Expect = 1e-53, Method: Compositional matrix adjust.
Identities = 171/665 (25%), Positives = 288/665 (43%), Gaps = 50/665 (7%)
Query: 21 PSHQYHPLDSLTPSEFTQIQSIVTKAYPKSTYNLTFQYVGLKEPTKQTVLSWLRNETTTN 80
P+ HPLD L+ +E + V + + ++F V L+EP ++ + W + +
Sbjct: 1 PARPAHPLDPLSTAEIKAATNTVKSYF--AGKKISFNTVTLREPARKAYIQW-KEQGGPL 57
Query: 81 PPRQAFVVARIDHQ--THEIIVDLSLQGITSKKTYNGYGYPLLTGEEQEDANKLASTYPL 138
PPR A+ V + E +VDL+ + + P+LT E+ ++ P
Sbjct: 58 PPRLAYYVILEAGKPGVKEGLVDLASLSVIETRALETV-QPILTVEDLCSTEEVIRNDPA 116
Query: 139 FVASISKRGL---KLEEVVCGSFTVGWFGEERKNKRIVKMMCYYLDGTLNADMRPIEGIT 195
+ G+ ++ +V C +T+G+ KR+ + + YY ++
Sbjct: 117 VIEQCVLSGIPANEMHKVYCDPWTIGYDERWGTGKRLQQALVYYRSDEDDSQYSHPLDFC 176
Query: 196 MTVDLDEMKIIQFRDRIIVPVPKSDGTEYRESKLKP--------PFRPSLKRTTVVQPDG 247
VD +E K+I I +P + ++++ + P RP V QP+G
Sbjct: 177 PIVDTEEKKVI----FIDIPNRRRKVSKHKHANFYPKHMIEKVGAMRPEAPPINVTQPEG 232
Query: 248 PSFNIVGSQIRWADWEFHLSFDARAGMIISVASIYDPEKQQSRQVLYKGHVSELFVPYMD 307
SF + G+ + W++++FH+ F+ R G+++S S D R + ++ +SE+ VPY
Sbjct: 233 VSFKMTGNVMEWSNFKFHIGFNYREGIVLSDVSYND--HGNVRPIFHRISLSEMIVPYGS 290
Query: 308 LTEEWYYRSFFDVGEYGYGLSSLPLEPLRDCPPNAVFMDAYFAKNDGMPLKMPNVFCIFE 367
+ D+GEYG G + PL DC ++DA+F+ G P+ + N CI E
Sbjct: 291 PEFPHQRKHALDIGEYGAGYMTNPLSLGCDCKGVIHYLDAHFSDRAGDPITVKNAVCIHE 350
Query: 368 RYAGDVMWRHTEATDPEKLIREVRPEVSLVVRTVSTVGNYDYINDWEFKQSGSIKVTVGL 427
G ++++H++ D V LVV + T N +Y W F Q G+I++ + L
Sbjct: 351 EDDG-LLFKHSDFRD-NFATSLVTRATKLVVSQIFTAANXEYCLYWVFMQDGAIRLDIRL 408
Query: 428 TGMLEVRGTNYTHKDQIEEDVYGTLIAENTIGVRHDHFLTYRLDLDVDGDANSFVKSKLR 487
TG+L Y D E +GT + N H H + R+D +DGD NS +
Sbjct: 409 TGILNT----YILGDDEEAGPWGTRVYPNVNAHNHQHLFSLRIDPRIDGDGNSAAACDAK 464
Query: 488 T----------VRVNDHGSPRKSYWTVDRETARTESAARIKLGSEPVDLLFVNPNKKTKM 537
+ + N S + ++ TV ESA D+ NPNK
Sbjct: 465 SSPYPLGSPENMYGNAFYSEKTTFKTVKDSLTNYESAT-----GRSWDIF--NPNKVNPY 517
Query: 538 -GNLIGYRLVPYGVVGPLLSDDDYPQIRAAFTNYNAWVTAYNISEKWAGGLYADQSRGDD 596
G Y+LV L + RA + +++ V Y + + G + Q GD
Sbjct: 518 SGKPPSYKLVSTQCPPLLAKEGSLVAKRAPWASHSVNVVPYKDNRLYPSGDHVPQWSGDG 577
Query: 597 T--LSVW-SKRNRSIENKDIVLWYTLGFHHVPCQEDFPVMPTFNGGFELRPSNFFESNPV 653
+ W + +I+N DI+ ++T G H P EDFP+MP LRP +FF NP
Sbjct: 578 VRGMREWIGDGSENIDNTDILFFHTFGITHFPAPEDFPLMPAEPITLMLRPRHFFTENPG 637
Query: 654 LKVVP 658
L + P
Sbjct: 638 LDIQP 642
>pdb|1SIH|A Chain A, Agao In Covalent Complex With The Inhibitor Moba ("4-(4-
Methylphenoxy)-2-Butyn-1-Amine")
pdb|1SII|A Chain A, Agao In Covalent Complex With The Inhibitor Noba
("4-(2-Naphthyloxy)- 2-Butyn-1-Amine")
pdb|1RJO|A Chain A, Agao + Xe
pdb|2BT3|A Chain A, Agao In Complex With Ruthenium-c4-wire At 1.73 Angstroms
pdb|1W4N|A Chain A, Agao Covalent Complex With Tranylcypromine
pdb|1W4N|B Chain B, Agao Covalent Complex With Tranylcypromine
pdb|1W5Z|A Chain A, Agao Covalent Complex With Benzylhydrazine
pdb|1W6C|A Chain A, Agao Holoenzyme In A Small Cell, At 2.2 Angstroms
pdb|1W6G|A Chain A, Agao Holoenzyme At 1.55 Angstroms
pdb|2CFD|A Chain A, Agao In Complex With Wc4l3 (Ru-Wire Inhibitor, 4-Carbon
Linker, Lambda Enantiomer, Data Set 3)
pdb|2CFD|B Chain B, Agao In Complex With Wc4l3 (Ru-Wire Inhibitor, 4-Carbon
Linker, Lambda Enantiomer, Data Set 3)
pdb|2CFG|A Chain A, Agao In Complex With Wc4d3 (Ru-Wire Inhibitor, 4-Carbon
Linker, Delta Enantiomer, Data Set 3)
pdb|2CFG|B Chain B, Agao In Complex With Wc4d3 (Ru-Wire Inhibitor, 4-Carbon
Linker, Delta Enantiomer, Data Set 3)
pdb|2CFK|A Chain A, Agao In Complex With Wc5 (Ru-Wire Inhibitor, 5-Carbon
Linker)
pdb|2CFL|A Chain A, Agao In Complex With Wc6b (Ru-Wire Inhibitor, 6-Carbon
Linker, Data Set B)
pdb|2CFW|A Chain A, Agao In Complex With Wc7a (Ru-Wire Inhibitor, 7-Carbon
Linker, Data Set A)
pdb|2CG0|A Chain A, Agao In Complex With Wc9a (Ru-Wire Inhibitor, 9-Carbon
Linker, Data Set A)
pdb|2CG1|A Chain A, Agao In Complex With Wc11b (Ru-Wire Inhibitor, 11-Carbon
Linker, Data Set B)
pdb|3KII|A Chain A, Agao 5-Phenoxy-2,3-Pentadienylamine Complex
pdb|3KII|B Chain B, Agao 5-Phenoxy-2,3-Pentadienylamine Complex
pdb|3KN4|A Chain A, Agao 6-Phenyl-2,3-Hexadienylamine Complex
Length = 646
Score = 206 bits (525), Expect = 3e-53, Method: Compositional matrix adjust.
Identities = 146/532 (27%), Positives = 252/532 (47%), Gaps = 22/532 (4%)
Query: 131 KLASTYPLFVASISKRGLKLEEVVCGSFTVGWFG-EERKNKRIVKMMCYYLDGTLN-ADM 188
+L +T ++ +++ R L + +V + G F E + +RI++ + + D + A
Sbjct: 108 QLLATDERWLKALAARNLDVSKVRVAPLSAGVFEYAEERGRRILRGLAFVQDFPEDSAWA 167
Query: 189 RPIEGITMTVDLDEMKIIQFRDRIIVPVPKSDGTEYRESKLKPPFRPSLKRTTVVQPDGP 248
P++G+ VD+ ++ + D + PVP G Y + +L P R + K ++ QP+GP
Sbjct: 168 HPVDGLVAYVDVVSKEVTRVIDTGVFPVPAEHGN-YTDPELTGPLRTTQKPISITQPEGP 226
Query: 249 SFNIVG-SQIRWADWEFHLSFDARAGMIISVASIYDPEKQQSRQVLYKGHVSELFVPYMD 307
SF + G + I W W + FD R G+++ + D ++ R ++ + ++E+ VPY D
Sbjct: 227 SFTVTGGNHIEWEKWSLDVGFDVREGVVLHNIAFRDGDRL--RPIINRASIAEMVVPYGD 284
Query: 308 LTEEWYYRSFFDVGEYGYGLSSLPLEPLRDCPPNAVFMDAYFAKNDGMPLKMPNVFCIFE 367
+ ++++FD GEY G + LE DC + ++ + G P ++ N C+ E
Sbjct: 285 PSPIRSWQNYFDTGEYLVGQYANSLELGCDCLGDITYLSPVISDAFGNPREIRNGICMHE 344
Query: 368 RYAGDVMWRHTEATDPEKLIREVRPEVSLVVRTVSTVGNYDYINDWEFKQSGSIKVTVGL 427
G ++ +H+ D I R +V+ +T+GN DY W G+I+
Sbjct: 345 EDWG-ILAKHS---DLWSGINYTRRNRRMVISFFTTIGNXDYGFYWYLYLDGTIEFEAKA 400
Query: 428 TGMLEVRGTNYTHKDQIEEDVYGTLIAENTIGVRHDHFLTYRLDLDVDGDANSFVKSKLR 487
TG++ D I + +A H H + RLD+ +DG N V+ +
Sbjct: 401 TGVVFTSAFPEGGSDNISQ------LAPGLGAPFHQHIFSARLDMAIDGFTNR-VEEEDV 453
Query: 488 TVRVNDHGSPRKSYWTVDRETARTES-AARIKLGSEPVDLLFVNPNKKTKMGNLIGYRLV 546
+ G+ R + ++ R ES A R + NP K ++ +GY+L
Sbjct: 454 VRQTMGPGNERGNAFSRKRTVLTRESEAVREADARTGRTWIISNPESKNRLNEPVGYKLH 513
Query: 547 PYGVVGPLLSDDDYPQI--RAAFTNYNAWVTAYNISEKWAGGLYADQSRGDDTLSVWSKR 604
+ P L D I RAAF + WVT Y E++ G + +Q G L + +
Sbjct: 514 AHNQ--PTLLADPGSSIARRAAFATKDLWVTRYADDERYPTGDFVNQHSGGAGLPSYIAQ 571
Query: 605 NRSIENKDIVLWYTLGFHHVPCQEDFPVMPTFNGGFELRPSNFFESNPVLKV 656
+R I+ +DIV+W+T G H P ED+P+MP GF+LRP FF+ +PVL V
Sbjct: 572 DRDIDGQDIVVWHTFGLTHFPRVEDWPIMPVDTVGFKLRPEGFFDRSPVLDV 623
>pdb|2E2U|A Chain A, Substrate Schiff-Base Analogue Of Copper Amine Oxidase
From Arthrobacter Globiformis Formed With
4-Hydroxybenzylhydrazine
pdb|2E2U|B Chain B, Substrate Schiff-Base Analogue Of Copper Amine Oxidase
From Arthrobacter Globiformis Formed With
4-Hydroxybenzylhydrazine
pdb|2E2V|A Chain A, Substrate Schiff-Base Analogue Of Copper Amine Oxidase
From Arthrobacter Globiformis Formed With
Benzylhydrazine
pdb|2E2V|B Chain B, Substrate Schiff-Base Analogue Of Copper Amine Oxidase
From Arthrobacter Globiformis Formed With
Benzylhydrazine
Length = 628
Score = 206 bits (524), Expect = 4e-53, Method: Compositional matrix adjust.
Identities = 146/532 (27%), Positives = 252/532 (47%), Gaps = 22/532 (4%)
Query: 131 KLASTYPLFVASISKRGLKLEEVVCGSFTVGWFG-EERKNKRIVKMMCYYLDGTLN-ADM 188
+L +T ++ +++ R L + +V + G F E + +RI++ + + D + A
Sbjct: 110 QLLATDERWLKALAARNLDVSKVRVAPLSAGVFEYAEERGRRILRGLAFVQDFPEDSAWA 169
Query: 189 RPIEGITMTVDLDEMKIIQFRDRIIVPVPKSDGTEYRESKLKPPFRPSLKRTTVVQPDGP 248
P++G+ VD+ ++ + D + PVP G Y + +L P R + K ++ QP+GP
Sbjct: 170 HPVDGLVAYVDVVSKEVTRVIDTGVFPVPAEHGN-YTDPELTGPLRTTQKPISITQPEGP 228
Query: 249 SFNIVG-SQIRWADWEFHLSFDARAGMIISVASIYDPEKQQSRQVLYKGHVSELFVPYMD 307
SF + G + I W W + FD R G+++ + D ++ R ++ + ++E+ VPY D
Sbjct: 229 SFTVTGGNHIEWEKWSLDVGFDVREGVVLHNIAFRDGDRL--RPIINRASIAEMVVPYGD 286
Query: 308 LTEEWYYRSFFDVGEYGYGLSSLPLEPLRDCPPNAVFMDAYFAKNDGMPLKMPNVFCIFE 367
+ ++++FD GEY G + LE DC + ++ + G P ++ N C+ E
Sbjct: 287 PSPIRSWQNYFDTGEYLVGQYANSLELGCDCLGDITYLSPVISDAFGNPREIRNGICMHE 346
Query: 368 RYAGDVMWRHTEATDPEKLIREVRPEVSLVVRTVSTVGNYDYINDWEFKQSGSIKVTVGL 427
G ++ +H+ D I R +V+ +T+GN DY W G+I+
Sbjct: 347 EDWG-ILAKHS---DLWSGINYTRRNRRMVISFFTTIGNXDYGFYWYLYLDGTIEFEAKA 402
Query: 428 TGMLEVRGTNYTHKDQIEEDVYGTLIAENTIGVRHDHFLTYRLDLDVDGDANSFVKSKLR 487
TG++ D I + +A H H + RLD+ +DG N V+ +
Sbjct: 403 TGVVFTSAFPEGGSDNISQ------LAPGLGAPFHQHIFSARLDMAIDGFTNR-VEEEDV 455
Query: 488 TVRVNDHGSPRKSYWTVDRETARTES-AARIKLGSEPVDLLFVNPNKKTKMGNLIGYRLV 546
+ G+ R + ++ R ES A R + NP K ++ +GY+L
Sbjct: 456 VRQTMGPGNERGNAFSRKRTVLTRESEAVREADARTGRTWIISNPESKNRLNEPVGYKLH 515
Query: 547 PYGVVGPLLSDDDYPQI--RAAFTNYNAWVTAYNISEKWAGGLYADQSRGDDTLSVWSKR 604
+ P L D I RAAF + WVT Y E++ G + +Q G L + +
Sbjct: 516 AHNQ--PTLLADPGSSIARRAAFATKDLWVTRYADDERYPTGDFVNQHSGGAGLPSYIAQ 573
Query: 605 NRSIENKDIVLWYTLGFHHVPCQEDFPVMPTFNGGFELRPSNFFESNPVLKV 656
+R I+ +DIV+W+T G H P ED+P+MP GF+LRP FF+ +PVL V
Sbjct: 574 DRDIDGQDIVVWHTFGLTHFPRVEDWPIMPVDTVGFKLRPEGFFDRSPVLDV 625
>pdb|1IVV|A Chain A, Crystal Structure Of Copper Amine Oxidase From
Arthrobacter Globiformis: Early Intermediate In
Topaquinone Biogenesis
pdb|1IVV|B Chain B, Crystal Structure Of Copper Amine Oxidase From
Arthrobacter Globiformis: Early Intermediate In
Topaquinone Biogenesis
pdb|1IVW|A Chain A, Crystal Structure Of Copper Amine Oxidase From
Arthrobacter Globiformis: Late Intermediate In
Topaquinone Biogenesis
pdb|1IVW|B Chain B, Crystal Structure Of Copper Amine Oxidase From
Arthrobacter Globiformis: Late Intermediate In
Topaquinone Biogenesis
pdb|1IVX|A Chain A, Crystal Structure Of Copper Amine Oxidase From
Arthrobacter Globiformis: Holo Form Generated By
Biogenesis In Crystal.
pdb|1IVX|B Chain B, Crystal Structure Of Copper Amine Oxidase From
Arthrobacter Globiformis: Holo Form Generated By
Biogenesis In Crystal.
pdb|1IQX|A Chain A, Crystal Structure Of Cobalt-Substituted Amine Oxidase From
Arthrobacter Globiformis
pdb|1IQX|B Chain B, Crystal Structure Of Cobalt-Substituted Amine Oxidase From
Arthrobacter Globiformis
pdb|1IQY|A Chain A, Crystal Structure Of Nickel-Substituted Amine Oxidase From
Arthrobacter Globiformis
pdb|1IQY|B Chain B, Crystal Structure Of Nickel-Substituted Amine Oxidase From
Arthrobacter Globiformis
pdb|1IU7|A Chain A, Holo Form Of Copper-Containing Amine Oxidase From
Arthrobacter Globiformis
pdb|1IU7|B Chain B, Holo Form Of Copper-Containing Amine Oxidase From
Arthrobacter Globiformis
pdb|1WMN|A Chain A, Crystal Structure Of Topaquinone-Containing Amine Oxidase
Activated By Cobalt Ion
pdb|1WMN|B Chain B, Crystal Structure Of Topaquinone-Containing Amine Oxidase
Activated By Cobalt Ion
pdb|1WMO|A Chain A, Crystal Structure Of Topaquinone-containing Amine Oxidase
Activated By Nickel Ion
pdb|1WMO|B Chain B, Crystal Structure Of Topaquinone-containing Amine Oxidase
Activated By Nickel Ion
pdb|1AV4|A Chain A, Crystal Structures Of The Copper-Containing Amine Oxidase
From Arthrobacter Globiformis In The Holo-And Apo-Forms:
Implications For The Biogenesis Of Topa Quinone
pdb|1AVL|A Chain A, Crystal Structures Of The Copper-Containing Amine Oxidase
From Arthrobacter Globiformis In The Holo-And Apo-Forms:
Implications For The Biogenesis Of Topa Quinone
pdb|2E2T|A Chain A, Substrate Schiff-Base Analogue Of Copper Amine Oxidase
From Arthrobacter Globiformis Formed With
Phenylhydrazine
pdb|2ZL8|A Chain A, Crystal Structure Of Copper Amine Oxidase From
Arthrobacter Globiformis: Substrate Schiff-Base
Intermediate Formed With Ethylamine
pdb|2ZL8|B Chain B, Crystal Structure Of Copper Amine Oxidase From
Arthrobacter Globiformis: Substrate Schiff-Base
Intermediate Formed With Ethylamine
pdb|3AMO|A Chain A, Time-Resolved X-Ray Crystal Structure Analysis Of
Enzymatic Reaction Of Copper Amine Oxidase From
Arthrobacter Globiformis
pdb|3AMO|B Chain B, Time-Resolved X-Ray Crystal Structure Analysis Of
Enzymatic Reaction Of Copper Amine Oxidase From
Arthrobacter Globiformis
Length = 638
Score = 206 bits (524), Expect = 4e-53, Method: Compositional matrix adjust.
Identities = 146/532 (27%), Positives = 252/532 (47%), Gaps = 22/532 (4%)
Query: 131 KLASTYPLFVASISKRGLKLEEVVCGSFTVGWFG-EERKNKRIVKMMCYYLDGTLN-ADM 188
+L +T ++ +++ R L + +V + G F E + +RI++ + + D + A
Sbjct: 110 QLLATDERWLKALAARNLDVSKVRVAPLSAGVFEYAEERGRRILRGLAFVQDFPEDSAWA 169
Query: 189 RPIEGITMTVDLDEMKIIQFRDRIIVPVPKSDGTEYRESKLKPPFRPSLKRTTVVQPDGP 248
P++G+ VD+ ++ + D + PVP G Y + +L P R + K ++ QP+GP
Sbjct: 170 HPVDGLVAYVDVVSKEVTRVIDTGVFPVPAEHGN-YTDPELTGPLRTTQKPISITQPEGP 228
Query: 249 SFNIVG-SQIRWADWEFHLSFDARAGMIISVASIYDPEKQQSRQVLYKGHVSELFVPYMD 307
SF + G + I W W + FD R G+++ + D ++ R ++ + ++E+ VPY D
Sbjct: 229 SFTVTGGNHIEWEKWSLDVGFDVREGVVLHNIAFRDGDRL--RPIINRASIAEMVVPYGD 286
Query: 308 LTEEWYYRSFFDVGEYGYGLSSLPLEPLRDCPPNAVFMDAYFAKNDGMPLKMPNVFCIFE 367
+ ++++FD GEY G + LE DC + ++ + G P ++ N C+ E
Sbjct: 287 PSPIRSWQNYFDTGEYLVGQYANSLELGCDCLGDITYLSPVISDAFGNPREIRNGICMHE 346
Query: 368 RYAGDVMWRHTEATDPEKLIREVRPEVSLVVRTVSTVGNYDYINDWEFKQSGSIKVTVGL 427
G ++ +H+ D I R +V+ +T+GN DY W G+I+
Sbjct: 347 EDWG-ILAKHS---DLWSGINYTRRNRRMVISFFTTIGNXDYGFYWYLYLDGTIEFEAKA 402
Query: 428 TGMLEVRGTNYTHKDQIEEDVYGTLIAENTIGVRHDHFLTYRLDLDVDGDANSFVKSKLR 487
TG++ D I + +A H H + RLD+ +DG N V+ +
Sbjct: 403 TGVVFTSAFPEGGSDNISQ------LAPGLGAPFHQHIFSARLDMAIDGFTNR-VEEEDV 455
Query: 488 TVRVNDHGSPRKSYWTVDRETARTES-AARIKLGSEPVDLLFVNPNKKTKMGNLIGYRLV 546
+ G+ R + ++ R ES A R + NP K ++ +GY+L
Sbjct: 456 VRQTMGPGNERGNAFSRKRTVLTRESEAVREADARTGRTWIISNPESKNRLNEPVGYKLH 515
Query: 547 PYGVVGPLLSDDDYPQI--RAAFTNYNAWVTAYNISEKWAGGLYADQSRGDDTLSVWSKR 604
+ P L D I RAAF + WVT Y E++ G + +Q G L + +
Sbjct: 516 AHNQ--PTLLADPGSSIARRAAFATKDLWVTRYADDERYPTGDFVNQHSGGAGLPSYIAQ 573
Query: 605 NRSIENKDIVLWYTLGFHHVPCQEDFPVMPTFNGGFELRPSNFFESNPVLKV 656
+R I+ +DIV+W+T G H P ED+P+MP GF+LRP FF+ +PVL V
Sbjct: 574 DRDIDGQDIVVWHTFGLTHFPRVEDWPIMPVDTVGFKLRPEGFFDRSPVLDV 625
>pdb|1UI7|A Chain A, Site-Directed Mutagenesis Of His433 Involved In Binding Of
Copper Ion In Arthrobacter Globiformis Amine Oxidase
pdb|1UI7|B Chain B, Site-Directed Mutagenesis Of His433 Involved In Binding Of
Copper Ion In Arthrobacter Globiformis Amine Oxidase
Length = 638
Score = 205 bits (522), Expect = 6e-53, Method: Compositional matrix adjust.
Identities = 146/532 (27%), Positives = 252/532 (47%), Gaps = 22/532 (4%)
Query: 131 KLASTYPLFVASISKRGLKLEEVVCGSFTVGWFG-EERKNKRIVKMMCYYLDGTLN-ADM 188
+L +T ++ +++ R L + +V + G F E + +RI++ + + D + A
Sbjct: 110 QLLATDERWLKALAARNLDVSKVRVAPLSAGVFEYAEERGRRILRGLAFVQDFPEDSAWA 169
Query: 189 RPIEGITMTVDLDEMKIIQFRDRIIVPVPKSDGTEYRESKLKPPFRPSLKRTTVVQPDGP 248
P++G+ VD+ ++ + D + PVP G Y + +L P R + K ++ QP+GP
Sbjct: 170 HPVDGLVAYVDVVSKEVTRVIDTGVFPVPAEHGN-YTDPELTGPLRTTQKPISITQPEGP 228
Query: 249 SFNIVG-SQIRWADWEFHLSFDARAGMIISVASIYDPEKQQSRQVLYKGHVSELFVPYMD 307
SF + G + I W W + FD R G+++ + D ++ R ++ + ++E+ VPY D
Sbjct: 229 SFTVTGGNHIEWEKWSLDVGFDVREGVVLHNIAFRDGDRL--RPIINRASIAEMVVPYGD 286
Query: 308 LTEEWYYRSFFDVGEYGYGLSSLPLEPLRDCPPNAVFMDAYFAKNDGMPLKMPNVFCIFE 367
+ ++++FD GEY G + LE DC + ++ + G P ++ N C+ E
Sbjct: 287 PSPIRSWQNYFDTGEYLVGQYANSLELGCDCLGDITYLSPVISDAFGNPREIRNGICMHE 346
Query: 368 RYAGDVMWRHTEATDPEKLIREVRPEVSLVVRTVSTVGNYDYINDWEFKQSGSIKVTVGL 427
G ++ +H+ D I R +V+ +T+GNYDY W G+I+
Sbjct: 347 EDWG-ILAKHS---DLWSGINYTRRNRRMVISFFTTIGNYDYGFYWYLYLDGTIEFEAKA 402
Query: 428 TGMLEVRGTNYTHKDQIEEDVYGTLIAENTIGVRHDHFLTYRLDLDVDGDANSFVKSKLR 487
TG++ D I + +A H + RLD+ +DG N V+ +
Sbjct: 403 TGVVFTSAFPEGGSDNISQ------LAPGLGAPFHQAIFSARLDMAIDGFTNR-VEEEDV 455
Query: 488 TVRVNDHGSPRKSYWTVDRETARTES-AARIKLGSEPVDLLFVNPNKKTKMGNLIGYRLV 546
+ G+ R + ++ R ES A R + NP K ++ +GY+L
Sbjct: 456 VRQTMGPGNERGNAFSRKRTVLTRESEAVREADARTGRTWIISNPESKNRLNEPVGYKLH 515
Query: 547 PYGVVGPLLSDDDYPQI--RAAFTNYNAWVTAYNISEKWAGGLYADQSRGDDTLSVWSKR 604
+ P L D I RAAF + WVT Y E++ G + +Q G L + +
Sbjct: 516 AHNQ--PTLLADPGSSIARRAAFATKDLWVTRYADDERYPTGDFVNQHSGGAGLPSYIAQ 573
Query: 605 NRSIENKDIVLWYTLGFHHVPCQEDFPVMPTFNGGFELRPSNFFESNPVLKV 656
+R I+ +DIV+W+T G H P ED+P+MP GF+LRP FF+ +PVL V
Sbjct: 574 DRDIDGQDIVVWHTFGLTHFPRVEDWPIMPVDTVGFKLRPEGFFDRSPVLDV 625
>pdb|2YX9|A Chain A, Crystal Structure Of D298k Copper Amine Oxidase From
Arthrobacter Globiformis
pdb|2YX9|B Chain B, Crystal Structure Of D298k Copper Amine Oxidase From
Arthrobacter Globiformis
Length = 638
Score = 203 bits (517), Expect = 2e-52, Method: Compositional matrix adjust.
Identities = 145/532 (27%), Positives = 251/532 (47%), Gaps = 22/532 (4%)
Query: 131 KLASTYPLFVASISKRGLKLEEVVCGSFTVGWFG-EERKNKRIVKMMCYYLDGTLN-ADM 188
+L +T ++ +++ R L + +V + G F E + +RI++ + + D + A
Sbjct: 110 QLLATDERWLKALAARNLDVSKVRVAPLSAGVFEYAEERGRRILRGLAFVQDFPEDSAWA 169
Query: 189 RPIEGITMTVDLDEMKIIQFRDRIIVPVPKSDGTEYRESKLKPPFRPSLKRTTVVQPDGP 248
P++G+ VD+ ++ + D + PVP G Y + +L P R + K ++ QP+GP
Sbjct: 170 HPVDGLVAYVDVVSKEVTRVIDTGVFPVPAEHGN-YTDPELTGPLRTTQKPISITQPEGP 228
Query: 249 SFNIVG-SQIRWADWEFHLSFDARAGMIISVASIYDPEKQQSRQVLYKGHVSELFVPYMD 307
SF + G + I W W + FD R G+++ + D ++ R ++ + ++E+ VPY D
Sbjct: 229 SFTVTGGNHIEWEKWSLDVGFDVREGVVLHNIAFRDGDRL--RPIINRASIAEMVVPYGD 286
Query: 308 LTEEWYYRSFFDVGEYGYGLSSLPLEPLRDCPPNAVFMDAYFAKNDGMPLKMPNVFCIFE 367
+ ++++F GEY G + LE DC + ++ + G P ++ N C+ E
Sbjct: 287 PSPIRSWQNYFKTGEYLVGQYANSLELGCDCLGDITYLSPVISDAFGNPREIRNGICMHE 346
Query: 368 RYAGDVMWRHTEATDPEKLIREVRPEVSLVVRTVSTVGNYDYINDWEFKQSGSIKVTVGL 427
G ++ +H+ D I R +V+ +T+GN DY W G+I+
Sbjct: 347 EDWG-ILAKHS---DLWSGINYTRRNRRMVISFFTTIGNXDYGFYWYLYLDGTIEFEAKA 402
Query: 428 TGMLEVRGTNYTHKDQIEEDVYGTLIAENTIGVRHDHFLTYRLDLDVDGDANSFVKSKLR 487
TG++ D I + +A H H + RLD+ +DG N V+ +
Sbjct: 403 TGVVFTSAFPEGGSDNISQ------LAPGLGAPFHQHIFSARLDMAIDGFTNR-VEEEDV 455
Query: 488 TVRVNDHGSPRKSYWTVDRETARTES-AARIKLGSEPVDLLFVNPNKKTKMGNLIGYRLV 546
+ G+ R + ++ R ES A R + NP K ++ +GY+L
Sbjct: 456 VRQTMGPGNERGNAFSRKRTVLTRESEAVREADARTGRTWIISNPESKNRLNEPVGYKLH 515
Query: 547 PYGVVGPLLSDDDYPQI--RAAFTNYNAWVTAYNISEKWAGGLYADQSRGDDTLSVWSKR 604
+ P L D I RAAF + WVT Y E++ G + +Q G L + +
Sbjct: 516 AHNQ--PTLLADPGSSIARRAAFATKDLWVTRYADDERYPTGDFVNQHSGGAGLPSYIAQ 573
Query: 605 NRSIENKDIVLWYTLGFHHVPCQEDFPVMPTFNGGFELRPSNFFESNPVLKV 656
+R I+ +DIV+W+T G H P ED+P+MP GF+LRP FF+ +PVL V
Sbjct: 574 DRDIDGQDIVVWHTFGLTHFPRVEDWPIMPVDTVGFKLRPEGFFDRSPVLDV 625
>pdb|2CWT|A Chain A, Catalytic Base Deletion In Copper Amine Oxidase From
Arthrobacter Globiformis
pdb|2CWT|B Chain B, Catalytic Base Deletion In Copper Amine Oxidase From
Arthrobacter Globiformis
pdb|2CWU|A Chain A, Substrate Schiff-Base Intermediate Of Copper Amine Oxidase
From Arthrobacter Globiformis
pdb|2CWU|B Chain B, Substrate Schiff-Base Intermediate Of Copper Amine Oxidase
From Arthrobacter Globiformis
pdb|2CWV|A Chain A, Product Schiff-Base Intermediate Of Copper Amine Oxidase
From Arthrobacter Globiformis
pdb|2CWV|B Chain B, Product Schiff-Base Intermediate Of Copper Amine Oxidase
From Arthrobacter Globiformis
pdb|2D1W|A Chain A, Substrate Schiff-Base Intermediate With Tyramine In Copper
Amine Oxidase From Arthrobacter Globiformis
pdb|2D1W|B Chain B, Substrate Schiff-Base Intermediate With Tyramine In Copper
Amine Oxidase From Arthrobacter Globiformis
Length = 638
Score = 203 bits (516), Expect = 3e-52, Method: Compositional matrix adjust.
Identities = 145/532 (27%), Positives = 251/532 (47%), Gaps = 22/532 (4%)
Query: 131 KLASTYPLFVASISKRGLKLEEVVCGSFTVGWFG-EERKNKRIVKMMCYYLDGTLN-ADM 188
+L +T ++ +++ R L + +V + G F E + +RI++ + + D + A
Sbjct: 110 QLLATDERWLKALAARNLDVSKVRVAPLSAGVFEYAEERGRRILRGLAFVQDFPEDSAWA 169
Query: 189 RPIEGITMTVDLDEMKIIQFRDRIIVPVPKSDGTEYRESKLKPPFRPSLKRTTVVQPDGP 248
P++G+ VD+ ++ + D + PVP G Y + +L P R + K ++ QP+GP
Sbjct: 170 HPVDGLVAYVDVVSKEVTRVIDTGVFPVPAEHGN-YTDPELTGPLRTTQKPISITQPEGP 228
Query: 249 SFNIVG-SQIRWADWEFHLSFDARAGMIISVASIYDPEKQQSRQVLYKGHVSELFVPYMD 307
SF + G + I W W + FD R G+++ + D ++ R ++ + ++E+ VPY D
Sbjct: 229 SFTVTGGNHIEWEKWSLDVGFDVREGVVLHNIAFRDGDRL--RPIINRASIAEMVVPYGD 286
Query: 308 LTEEWYYRSFFDVGEYGYGLSSLPLEPLRDCPPNAVFMDAYFAKNDGMPLKMPNVFCIFE 367
+ ++++F GEY G + LE DC + ++ + G P ++ N C+ E
Sbjct: 287 PSPIRSWQNYFATGEYLVGQYANSLELGCDCLGDITYLSPVISDAFGNPREIRNGICMHE 346
Query: 368 RYAGDVMWRHTEATDPEKLIREVRPEVSLVVRTVSTVGNYDYINDWEFKQSGSIKVTVGL 427
G ++ +H+ D I R +V+ +T+GN DY W G+I+
Sbjct: 347 EDWG-ILAKHS---DLWSGINYTRRNRRMVISFFTTIGNXDYGFYWYLYLDGTIEFEAKA 402
Query: 428 TGMLEVRGTNYTHKDQIEEDVYGTLIAENTIGVRHDHFLTYRLDLDVDGDANSFVKSKLR 487
TG++ D I + +A H H + RLD+ +DG N V+ +
Sbjct: 403 TGVVFTSAFPEGGSDNISQ------LAPGLGAPFHQHIFSARLDMAIDGFTNR-VEEEDV 455
Query: 488 TVRVNDHGSPRKSYWTVDRETARTES-AARIKLGSEPVDLLFVNPNKKTKMGNLIGYRLV 546
+ G+ R + ++ R ES A R + NP K ++ +GY+L
Sbjct: 456 VRQTMGPGNERGNAFSRKRTVLTRESEAVREADARTGRTWIISNPESKNRLNEPVGYKLH 515
Query: 547 PYGVVGPLLSDDDYPQI--RAAFTNYNAWVTAYNISEKWAGGLYADQSRGDDTLSVWSKR 604
+ P L D I RAAF + WVT Y E++ G + +Q G L + +
Sbjct: 516 AHNQ--PTLLADPGSSIARRAAFATKDLWVTRYADDERYPTGDFVNQHSGGAGLPSYIAQ 573
Query: 605 NRSIENKDIVLWYTLGFHHVPCQEDFPVMPTFNGGFELRPSNFFESNPVLKV 656
+R I+ +DIV+W+T G H P ED+P+MP GF+LRP FF+ +PVL V
Sbjct: 574 DRDIDGQDIVVWHTFGLTHFPRVEDWPIMPVDTVGFKLRPEGFFDRSPVLDV 625
>pdb|3N9H|A Chain A, Crystal Structural Of Mutant Y305a In The Copper Amine
Oxidase From Hansenula Polymorpha
pdb|3N9H|B Chain B, Crystal Structural Of Mutant Y305a In The Copper Amine
Oxidase From Hansenula Polymorpha
pdb|3N9H|C Chain C, Crystal Structural Of Mutant Y305a In The Copper Amine
Oxidase From Hansenula Polymorpha
pdb|3N9H|D Chain D, Crystal Structural Of Mutant Y305a In The Copper Amine
Oxidase From Hansenula Polymorpha
pdb|3N9H|E Chain E, Crystal Structural Of Mutant Y305a In The Copper Amine
Oxidase From Hansenula Polymorpha
pdb|3N9H|F Chain F, Crystal Structural Of Mutant Y305a In The Copper Amine
Oxidase From Hansenula Polymorpha
Length = 692
Score = 202 bits (514), Expect = 4e-52, Method: Compositional matrix adjust.
Identities = 169/660 (25%), Positives = 285/660 (43%), Gaps = 50/660 (7%)
Query: 26 HPLDSLTPSEFTQIQSIVTKAYPKSTYNLTFQYVGLKEPTKQTVLSWLRNETTTNPPRQA 85
HPLD L+ +E + V + + ++F V L+EP ++ + W + + PPR A
Sbjct: 23 HPLDPLSTAEIKAATNTVKSYF--AGKKISFNTVTLREPARKAYIQW-KEQGGPLPPRLA 79
Query: 86 FVVARIDHQ--THEIIVDLSLQGITSKKTYNGYGYPLLTGEEQEDANKLASTYPLFVASI 143
+ V + E +VDL+ + + P+LT E+ ++ P +
Sbjct: 80 YYVILEAGKPGVKEGLVDLASLSVIETRALETV-QPILTVEDLCSTEEVIRNDPAVIEQC 138
Query: 144 SKRGL---KLEEVVCGSFTVGWFGEERKNKRIVKMMCYYLDGTLNADMRPIEGITMTVDL 200
G+ ++ +V C +T+G+ KR+ + + YY ++ VD
Sbjct: 139 VLSGIPANEMHKVYCDPWTIGYDERWGTGKRLQQALVYYRSDEDDSQYSHPLDFCPIVDT 198
Query: 201 DEMKIIQFRDRIIVPVPKSDGTEYRESKLKP--------PFRPSLKRTTVVQPDGPSFNI 252
+E K+I I +P + ++++ + P RP V QP+G SF +
Sbjct: 199 EEKKVI----FIDIPNRRRKVSKHKHANFYPKHMIEKVGAMRPEAPPINVTQPEGVSFKM 254
Query: 253 VGSQIRWADWEFHLSFDARAGMIISVASIYDPEKQQSRQVLYKGHVSELFVPYMDLTEEW 312
G+ + W++++FH+ F+ R G+++S S D R + ++ +SE+ VP
Sbjct: 255 TGNVMEWSNFKFHIGFNYREGIVLSDVSYND--HGNVRPIFHRISLSEMIVPAGSPEFPH 312
Query: 313 YYRSFFDVGEYGYGLSSLPLEPLRDCPPNAVFMDAYFAKNDGMPLKMPNVFCIFERYAGD 372
+ D+GEYG G + PL DC ++DA+F+ G P+ + N CI E G
Sbjct: 313 QRKHALDIGEYGAGYMTNPLSLGCDCKGVIHYLDAHFSDRAGDPITVKNAVCIHEEDDG- 371
Query: 373 VMWRHTEATDPEKLIREVRPEVSLVVRTVSTVGNYDYINDWEFKQSGSIKVTVGLTGMLE 432
++++H++ D R LVV + T N +Y W F Q G+I++ + LTG+L
Sbjct: 372 LLFKHSDFRDNFATSLVTR-ATKLVVSQIFTAANXEYCLYWVFMQDGAIRLDIRLTGILN 430
Query: 433 VRGTNYTHKDQIEEDVYGTLIAENTIGVRHDHFLTYRLDLDVDGDANSFVKSKLRT---- 488
Y D E +GT + N H H + R+D +DGD NS ++
Sbjct: 431 T----YILGDDEEAGPWGTRVYPNVNAHNHQHLFSLRIDPRIDGDGNSAAACDAKSSPYP 486
Query: 489 ------VRVNDHGSPRKSYWTVDRETARTESAARIKLGSEPVDLLFVNPNKKTKM-GNLI 541
+ N S + ++ TV ESA D+ NPNK G
Sbjct: 487 LGSPENMYGNAFYSEKTTFKTVKDSLTNYESAT-----GRSWDIF--NPNKVNPYSGKPP 539
Query: 542 GYRLVPYGVVGPLLSDDDYPQIRAAFTNYNAWVTAYNISEKWAGGLYADQSRGDDT--LS 599
Y+LV L + RA + +++ V Y + + G + Q GD +
Sbjct: 540 SYKLVSTQCPPLLAKEGSLVAKRAPWASHSVNVVPYKDNRLYPSGDHVPQWSGDGVRGMR 599
Query: 600 VW-SKRNRSIENKDIVLWYTLGFHHVPCQEDFPVMPTFNGGFELRPSNFFESNPVLKVVP 658
W + +I+N DI+ ++T G H P EDFP+MP LRP +FF NP L + P
Sbjct: 600 EWIGDGSENIDNTDILFFHTFGITHFPAPEDFPLMPAEPITLMLRPRHFFTENPGLDIQP 659
>pdb|1UI8|A Chain A, Site-directed Mutagenesis Of His592 Involved In Binding Of
Copper Ion In Arthrobacter Globiformis Amine Oxidase
pdb|1UI8|B Chain B, Site-directed Mutagenesis Of His592 Involved In Binding Of
Copper Ion In Arthrobacter Globiformis Amine Oxidase
Length = 638
Score = 202 bits (514), Expect = 5e-52, Method: Compositional matrix adjust.
Identities = 145/532 (27%), Positives = 251/532 (47%), Gaps = 22/532 (4%)
Query: 131 KLASTYPLFVASISKRGLKLEEVVCGSFTVGWFG-EERKNKRIVKMMCYYLDGTLN-ADM 188
+L +T ++ +++ R L + +V + G F E + +RI++ + + D + A
Sbjct: 110 QLLATDERWLKALAARNLDVSKVRVAPLSAGVFEYAEERGRRILRGLAFVQDFPEDSAWA 169
Query: 189 RPIEGITMTVDLDEMKIIQFRDRIIVPVPKSDGTEYRESKLKPPFRPSLKRTTVVQPDGP 248
P++G+ VD+ ++ + D + PVP G Y + +L P R + K ++ QP+GP
Sbjct: 170 HPVDGLVAYVDVVSKEVTRVIDTGVFPVPAEHGN-YTDPELTGPLRTTQKPISITQPEGP 228
Query: 249 SFNIVG-SQIRWADWEFHLSFDARAGMIISVASIYDPEKQQSRQVLYKGHVSELFVPYMD 307
SF + G + I W W + FD R G+++ + D ++ R ++ + ++E+ VPY D
Sbjct: 229 SFTVTGGNHIEWEKWSLDVGFDVREGVVLHNIAFRDGDRL--RPIINRASIAEMVVPYGD 286
Query: 308 LTEEWYYRSFFDVGEYGYGLSSLPLEPLRDCPPNAVFMDAYFAKNDGMPLKMPNVFCIFE 367
+ ++++FD GEY G + LE DC + ++ + G P ++ N C+ E
Sbjct: 287 PSPIRSWQNYFDTGEYLVGQYANSLELGCDCLGDITYLSPVISDAFGNPREIRNGICMHE 346
Query: 368 RYAGDVMWRHTEATDPEKLIREVRPEVSLVVRTVSTVGNYDYINDWEFKQSGSIKVTVGL 427
G ++ +H+ D I R +V+ +T+GN DY W G+I+
Sbjct: 347 EDWG-ILAKHS---DLWSGINYTRRNRRMVISFFTTIGNXDYGFYWYLYLDGTIEFEAKA 402
Query: 428 TGMLEVRGTNYTHKDQIEEDVYGTLIAENTIGVRHDHFLTYRLDLDVDGDANSFVKSKLR 487
TG++ D I + +A H H + RLD+ +DG N V+ +
Sbjct: 403 TGVVFTSAFPEGGSDNISQ------LAPGLGAPFHQHIFSARLDMAIDGFTNR-VEEEDV 455
Query: 488 TVRVNDHGSPRKSYWTVDRETARTES-AARIKLGSEPVDLLFVNPNKKTKMGNLIGYRLV 546
+ G+ R + ++ R ES A R + NP K ++ +GY+L
Sbjct: 456 VRQTMGPGNERGNAFSRKRTVLTRESEAVREADARTGRTWIISNPESKNRLNEPVGYKLH 515
Query: 547 PYGVVGPLLSDDDYPQI--RAAFTNYNAWVTAYNISEKWAGGLYADQSRGDDTLSVWSKR 604
+ P L D I RAAF + WVT Y E++ G + +Q G L + +
Sbjct: 516 AHNQ--PTLLADPGSSIARRAAFATKDLWVTRYADDERYPTGDFVNQHSGGAGLPSYIAQ 573
Query: 605 NRSIENKDIVLWYTLGFHHVPCQEDFPVMPTFNGGFELRPSNFFESNPVLKV 656
+R I+ +DIV+W+T G P ED+P+MP GF+LRP FF+ +PVL V
Sbjct: 574 DRDIDGQDIVVWHTFGLTAFPRVEDWPIMPVDTVGFKLRPEGFFDRSPVLDV 625
>pdb|2OOV|C Chain C, Crystal Structure Of Hansenula Polymorpha Amine Oxidase To
1.7 Angstroms
pdb|2OOV|D Chain D, Crystal Structure Of Hansenula Polymorpha Amine Oxidase To
1.7 Angstroms
pdb|2OOV|E Chain E, Crystal Structure Of Hansenula Polymorpha Amine Oxidase To
1.7 Angstroms
pdb|2OOV|F Chain F, Crystal Structure Of Hansenula Polymorpha Amine Oxidase To
1.7 Angstroms
pdb|2OQE|C Chain C, Crystal Structure Of Hansenula Polymorpha Amine Oxidase In
Complex With Xe To 1.6 Angstroms
pdb|2OQE|D Chain D, Crystal Structure Of Hansenula Polymorpha Amine Oxidase In
Complex With Xe To 1.6 Angstroms
pdb|2OQE|E Chain E, Crystal Structure Of Hansenula Polymorpha Amine Oxidase In
Complex With Xe To 1.6 Angstroms
pdb|2OQE|F Chain F, Crystal Structure Of Hansenula Polymorpha Amine Oxidase In
Complex With Xe To 1.6 Angstroms
Length = 660
Score = 199 bits (507), Expect = 3e-51, Method: Compositional matrix adjust.
Identities = 168/658 (25%), Positives = 284/658 (43%), Gaps = 50/658 (7%)
Query: 28 LDSLTPSEFTQIQSIVTKAYPKSTYNLTFQYVGLKEPTKQTVLSWLRNETTTNPPRQAFV 87
LD L+ +E + V + + ++F V L+EP ++ + W + + PPR A+
Sbjct: 13 LDPLSTAEIKAATNTVKSYF--AGKKISFNTVTLREPARKAYIQW-KEQGGPLPPRLAYY 69
Query: 88 VARIDHQ--THEIIVDLSLQGITSKKTYNGYGYPLLTGEEQEDANKLASTYPLFVASISK 145
V + E +VDL+ + + P+LT E+ ++ P +
Sbjct: 70 VILEAGKPGVKEGLVDLASLSVIETRALETV-QPILTVEDLCSTEEVIRNDPAVIEQCVL 128
Query: 146 RGL---KLEEVVCGSFTVGWFGEERKNKRIVKMMCYYLDGTLNADMRPIEGITMTVDLDE 202
G+ ++ +V C +T+G+ KR+ + + YY ++ VD +E
Sbjct: 129 SGIPANEMHKVYCDPWTIGYDERWGTGKRLQQALVYYRSDEDDSQYSHPLDFCPIVDTEE 188
Query: 203 MKIIQFRDRIIVPVPKSDGTEYRESKLKP--------PFRPSLKRTTVVQPDGPSFNIVG 254
K+I I +P + ++++ + P RP V QP+G SF + G
Sbjct: 189 KKVI----FIDIPNRRRKVSKHKHANFYPKHMIEKVGAMRPEAPPINVTQPEGVSFKMTG 244
Query: 255 SQIRWADWEFHLSFDARAGMIISVASIYDPEKQQSRQVLYKGHVSELFVPYMDLTEEWYY 314
+ + W++++FH+ F+ R G+++S S D R + ++ +SE+ VPY
Sbjct: 245 NVMEWSNFKFHIGFNYREGIVLSDVSYND--HGNVRPIFHRISLSEMIVPYGSPEFPHQR 302
Query: 315 RSFFDVGEYGYGLSSLPLEPLRDCPPNAVFMDAYFAKNDGMPLKMPNVFCIFERYAGDVM 374
+ D+GEYG G + PL DC ++DA+F+ G P+ + N CI E G ++
Sbjct: 303 KHALDIGEYGAGYMTNPLSLGCDCKGVIHYLDAHFSDRAGDPITVKNAVCIHEEDDG-LL 361
Query: 375 WRHTEATDPEKLIREVRPEVSLVVRTVSTVGNYDYINDWEFKQSGSIKVTVGLTGMLEVR 434
++H++ D R LVV + T N +Y W F Q G+I++ + LTG+L
Sbjct: 362 FKHSDFRDNFATSLVTR-ATKLVVSQIFTAANXEYCLYWVFMQDGAIRLDIRLTGILNT- 419
Query: 435 GTNYTHKDQIEEDVYGTLIAENTIGVRHDHFLTYRLDLDVDGDANSFVKSKLRT------ 488
Y D E +GT + N H H + R+D +DGD NS ++
Sbjct: 420 ---YILGDDEEAGPWGTRVYPNVNAHNHQHLFSLRIDPRIDGDGNSAAACDAKSSPYPLG 476
Query: 489 ----VRVNDHGSPRKSYWTVDRETARTESAARIKLGSEPVDLLFVNPNKKTKM-GNLIGY 543
+ N S + ++ TV ESA D+ NPNK G Y
Sbjct: 477 SPENMYGNAFYSEKTTFKTVKDSLTNYESAT-----GRSWDIF--NPNKVNPYSGKPPSY 529
Query: 544 RLVPYGVVGPLLSDDDYPQIRAAFTNYNAWVTAYNISEKWAGGLYADQSRGDDT--LSVW 601
+LV L + RA + +++ V Y + + G + Q GD + W
Sbjct: 530 KLVSTQCPPLLAKEGSLVAKRAPWASHSVNVVPYKDNRLYPSGDHVPQWSGDGVRGMREW 589
Query: 602 -SKRNRSIENKDIVLWYTLGFHHVPCQEDFPVMPTFNGGFELRPSNFFESNPVLKVVP 658
+ +I+N DI+ ++T G H P EDFP+MP LRP +FF NP L + P
Sbjct: 590 IGDGSENIDNTDILFFHTFGITHFPAPEDFPLMPAEPITLMLRPRHFFTENPGLDIQP 647
>pdb|2OOV|A Chain A, Crystal Structure Of Hansenula Polymorpha Amine Oxidase To
1.7 Angstroms
pdb|2OOV|B Chain B, Crystal Structure Of Hansenula Polymorpha Amine Oxidase To
1.7 Angstroms
pdb|2OQE|A Chain A, Crystal Structure Of Hansenula Polymorpha Amine Oxidase In
Complex With Xe To 1.6 Angstroms
pdb|2OQE|B Chain B, Crystal Structure Of Hansenula Polymorpha Amine Oxidase In
Complex With Xe To 1.6 Angstroms
Length = 660
Score = 197 bits (501), Expect = 2e-50, Method: Compositional matrix adjust.
Identities = 167/658 (25%), Positives = 283/658 (43%), Gaps = 50/658 (7%)
Query: 28 LDSLTPSEFTQIQSIVTKAYPKSTYNLTFQYVGLKEPTKQTVLSWLRNETTTNPPRQAFV 87
LD L+ +E + V + + ++F V L+EP ++ + W + + PPR A+
Sbjct: 13 LDPLSTAEIKAATNTVKSYF--AGKKISFNTVTLREPARKAYIQW-KEQGGPLPPRLAYY 69
Query: 88 VARIDHQ--THEIIVDLSLQGITSKKTYNGYGYPLLTGEEQEDANKLASTYPLFVASISK 145
V + E +VDL+ + + P+LT E+ ++ P +
Sbjct: 70 VILEAGKPGVKEGLVDLASLSVIETRALETV-QPILTVEDLCSTEEVIRNDPAVIEQCVL 128
Query: 146 RGL---KLEEVVCGSFTVGWFGEERKNKRIVKMMCYYLDGTLNADMRPIEGITMTVDLDE 202
G+ ++ +V C +T+G+ KR+ + + YY ++ VD +E
Sbjct: 129 SGIPANEMHKVYCDPWTIGYDERWGTGKRLQQALVYYRSDEDDSQYSHPLDFCPIVDTEE 188
Query: 203 MKIIQFRDRIIVPVPKSDGTEYRESKLKP--------PFRPSLKRTTVVQPDGPSFNIVG 254
K+I I +P + ++++ + P RP V QP+G SF + G
Sbjct: 189 KKVI----FIDIPNRRRKVSKHKHANFYPKHMIEKVGAMRPEAPPINVTQPEGVSFKMTG 244
Query: 255 SQIRWADWEFHLSFDARAGMIISVASIYDPEKQQSRQVLYKGHVSELFVPYMDLTEEWYY 314
+ + W++++FH+ F+ R G+++S S D R + ++ +SE+ VPY
Sbjct: 245 NVMEWSNFKFHIGFNYREGIVLSDVSYND--HGNVRPIFHRISLSEMIVPYGSPEFPHQR 302
Query: 315 RSFFDVGEYGYGLSSLPLEPLRDCPPNAVFMDAYFAKNDGMPLKMPNVFCIFERYAGDVM 374
+ D+GEYG G + PL DC ++DA+F+ G P+ + N CI E G ++
Sbjct: 303 KHALDIGEYGAGYMTNPLSLGCDCKGVIHYLDAHFSDRAGDPITVKNAVCIHEEDDG-LL 361
Query: 375 WRHTEATDPEKLIREVRPEVSLVVRTVSTVGNYDYINDWEFKQSGSIKVTVGLTGMLEVR 434
++H++ D R LVV + T N +Y W F Q G+I++ + LTG+L
Sbjct: 362 FKHSDFRDNFATSLVTR-ATKLVVSQIFTAANXEYCLYWVFMQDGAIRLDIRLTGILNT- 419
Query: 435 GTNYTHKDQIEEDVYGTLIAENTIGVRHDHFLTYRLDLDVDGDANSFVKSKLRT------ 488
Y D E +GT + N H H + R+D +DGD NS ++
Sbjct: 420 ---YILGDDEEAGPWGTRVYPNVNAHNHQHLFSLRIDPRIDGDGNSAAACDAKSSPYPLG 476
Query: 489 ----VRVNDHGSPRKSYWTVDRETARTESAARIKLGSEPVDLLFVNPNKKTKM-GNLIGY 543
+ N S + ++ TV ESA D+ NPNK G Y
Sbjct: 477 SPENMYGNAFYSEKTTFKTVKDSLTNYESAT-----GRSWDIF--NPNKVNPYSGKPPSY 529
Query: 544 RLVPYGVVGPLLSDDDYPQIRAAFTNYNAWVTAYNISEKWAGGLYADQSRGDDT--LSVW 601
+LV L + RA + +++ V Y + + G + Q GD + W
Sbjct: 530 KLVSTQCPPLLAKEGSLVAKRAPWASHSVNVVPYKDNRLYPSGDHVPQWSGDGVRGMREW 589
Query: 602 -SKRNRSIENKDIVLWYTLGFHHVPCQEDFPVMPTFNGGFELRPSNFFESNPVLKVVP 658
+ +I+N DI+ ++T G H P EDFP+ P LRP +FF NP L + P
Sbjct: 590 IGDGSENIDNTDILFFHTFGITHFPAPEDFPLXPAEPITLMLRPRHFFTENPGLDIQP 647
>pdb|3NBJ|A Chain A, Crystal Structure Of Y305f Mutant Of The Copper Amine
Oxidase From Hansenula Polymorpha Expressed In Yeast
pdb|3NBJ|B Chain B, Crystal Structure Of Y305f Mutant Of The Copper Amine
Oxidase From Hansenula Polymorpha Expressed In Yeast
pdb|3NBJ|C Chain C, Crystal Structure Of Y305f Mutant Of The Copper Amine
Oxidase From Hansenula Polymorpha Expressed In Yeast
pdb|3NBJ|D Chain D, Crystal Structure Of Y305f Mutant Of The Copper Amine
Oxidase From Hansenula Polymorpha Expressed In Yeast
pdb|3NBJ|E Chain E, Crystal Structure Of Y305f Mutant Of The Copper Amine
Oxidase From Hansenula Polymorpha Expressed In Yeast
pdb|3NBJ|F Chain F, Crystal Structure Of Y305f Mutant Of The Copper Amine
Oxidase From Hansenula Polymorpha Expressed In Yeast
Length = 657
Score = 197 bits (500), Expect = 2e-50, Method: Compositional matrix adjust.
Identities = 170/667 (25%), Positives = 288/667 (43%), Gaps = 52/667 (7%)
Query: 21 PSHQYHPLDSLTPSEFTQIQSIVTKAYPKSTYNLTFQYVGLKEPTKQTVLSWLRNETTTN 80
P+ HPLD L+ +E + V + + ++F V L+EP ++ + W + +
Sbjct: 1 PARPAHPLDPLSTAEIKAATNTVKSYF--AGKKISFNTVTLREPARKAYIQW-KEQGGPL 57
Query: 81 PPRQAFVVARIDHQ--THEIIVDLSLQGITSKKTYNGYGYPLLTGEEQEDANKLASTYPL 138
PPR A+ V + E +VDL+ + + P+LT E+ ++ P
Sbjct: 58 PPRLAYYVILEAGKPGVKEGLVDLASLSVIETRALETV-QPILTVEDLCSTEEVIRNDPA 116
Query: 139 FVASISKRGL---KLEEVVCGSFTVGWFGEERKNKRIVKMMCYYLDGTLNADMRPIEGIT 195
+ G+ ++ +V C +T+G+ KR+ + + YY ++
Sbjct: 117 VIEQCVLSGIPANEMHKVYCDPWTIGYDERWGTGKRLQQALVYYRSDEDDSQYSHPLDFC 176
Query: 196 MTVDLDEMKIIQFRDRIIVPVPKSDGTEYRESKLKP--------PFRPSLKRTTVVQPDG 247
VD +E K+I I +P + ++++ + P RP V QP+G
Sbjct: 177 PIVDTEEKKVI----FIDIPNRRRKVSKHKHANFYPKHMIEKVGAMRPEAPPINVTQPEG 232
Query: 248 PSFNIVGSQIRWADWEFHLSFDARAGMIISVASIYDPEKQQSRQVLYKGHVSELFVPYMD 307
SF + G+ + W++++FH+ F+ R G+++S S D R + ++ +SE+ VP+
Sbjct: 233 VSFKMTGNVMEWSNFKFHIGFNYREGIVLSDVSYND--HGNVRPIFHRISLSEMIVPFGS 290
Query: 308 LTEEWYYRSFFDVGEYGYGLSSLPLEPLRDCPPNAVFMDAYFAKNDGMPLKMPNVFCIFE 367
+ D+GEYG G + PL DC ++DA+F+ G P+ + N CI E
Sbjct: 291 PEFPHQRKHALDIGEYGAGYMTNPLSLGCDCKGVIHYLDAHFSDRAGDPITVKNAVCIHE 350
Query: 368 RYAGDVMWRHTEATDPEKLIREVRPEVSLVVRTVSTVGN-YDYINDWEFKQSGSIKVTVG 426
G ++++H++ D V LVV + T N +Y W F Q G+I++ +
Sbjct: 351 EDDG-LLFKHSDFRD-NFATSLVTRATKLVVSQIFTAANXXEYCLYWVFMQDGAIRLDIR 408
Query: 427 LTGMLEVRGTNYTHKDQIEEDVYGTLIAENTIGVRHDHFLTYRLDLDVDGDANSFVKSKL 486
LTG+L Y D E +GT + N H H + R+D +DGD NS
Sbjct: 409 LTGILNT----YILGDDEEAGPWGTRVYPNVNAHNHQHLFSLRIDPRIDGDGNSAAACDA 464
Query: 487 RT----------VRVNDHGSPRKSYWTVDRETARTESAARIKLGSEPVDLLFVNPNKKTK 536
++ + N S + ++ TV ESA D+ NPNK
Sbjct: 465 KSSPYPLGSPENMYGNAFYSEKTTFKTVKDSLTNYESAT-----GRSWDIF--NPNKVNP 517
Query: 537 M-GNLIGYRLVPYGVVGPLLSDDDYPQIRAAFTNYNAWVTAYNISEKWAGGLYADQSRGD 595
G Y+LV L + RA + +++ V Y + + G + Q GD
Sbjct: 518 YSGKPPSYKLVSTQCPPLLAKEGSLVAKRAPWASHSVNVVPYKDNRLYPSGDHVPQWSGD 577
Query: 596 DT--LSVW-SKRNRSIENKDIVLWYTLGFHHVPCQEDFPV-MPTFNGGFELRPSNFFESN 651
+ W + +I+N DI+ ++T G H P EDFP+ MP LRP +FF N
Sbjct: 578 GVRGMREWIGDGSENIDNTDILFFHTFGITHFPAPEDFPLXMPAEPITLMLRPRHFFTEN 637
Query: 652 PVLKVVP 658
P L + P
Sbjct: 638 PGLDIQP 644
>pdb|3NBB|A Chain A, Crystal Structure Of Mutant Y305f Expressed In E. Coli In
The Copper Amine Oxidase From Hansenula Polymorpha
pdb|3NBB|B Chain B, Crystal Structure Of Mutant Y305f Expressed In E. Coli In
The Copper Amine Oxidase From Hansenula Polymorpha
pdb|3NBB|C Chain C, Crystal Structure Of Mutant Y305f Expressed In E. Coli In
The Copper Amine Oxidase From Hansenula Polymorpha
pdb|3NBB|D Chain D, Crystal Structure Of Mutant Y305f Expressed In E. Coli In
The Copper Amine Oxidase From Hansenula Polymorpha
pdb|3NBB|E Chain E, Crystal Structure Of Mutant Y305f Expressed In E. Coli In
The Copper Amine Oxidase From Hansenula Polymorpha
pdb|3NBB|F Chain F, Crystal Structure Of Mutant Y305f Expressed In E. Coli In
The Copper Amine Oxidase From Hansenula Polymorpha
Length = 663
Score = 196 bits (498), Expect = 3e-50, Method: Compositional matrix adjust.
Identities = 170/667 (25%), Positives = 288/667 (43%), Gaps = 52/667 (7%)
Query: 21 PSHQYHPLDSLTPSEFTQIQSIVTKAYPKSTYNLTFQYVGLKEPTKQTVLSWLRNETTTN 80
P+ HPLD L+ +E + V + + ++F V L+EP ++ + W + +
Sbjct: 4 PARPAHPLDPLSTAEIKAATNTVKSYF--AGKKISFNTVTLREPARKAYIQW-KEQGGPL 60
Query: 81 PPRQAFVVARIDHQ--THEIIVDLSLQGITSKKTYNGYGYPLLTGEEQEDANKLASTYPL 138
PPR A+ V + E +VDL+ + + P+LT E+ ++ P
Sbjct: 61 PPRLAYYVILEAGKPGVKEGLVDLASLSVIETRALETV-QPILTVEDLCSTEEVIRNDPA 119
Query: 139 FVASISKRGL---KLEEVVCGSFTVGWFGEERKNKRIVKMMCYYLDGTLNADMRPIEGIT 195
+ G+ ++ +V C +T+G+ KR+ + + YY ++
Sbjct: 120 VIEQCVLSGIPANEMHKVYCDPWTIGYDERWGTGKRLQQALVYYRSDEDDSQYSHPLDFC 179
Query: 196 MTVDLDEMKIIQFRDRIIVPVPKSDGTEYRESKLKP--------PFRPSLKRTTVVQPDG 247
VD +E K+I I +P + ++++ + P RP V QP+G
Sbjct: 180 PIVDTEEKKVI----FIDIPNRRRKVSKHKHANFYPKHMIEKVGAMRPEAPPINVTQPEG 235
Query: 248 PSFNIVGSQIRWADWEFHLSFDARAGMIISVASIYDPEKQQSRQVLYKGHVSELFVPYMD 307
SF + G+ + W++++FH+ F+ R G+++S S D R + ++ +SE+ VP+
Sbjct: 236 VSFKMTGNVMEWSNFKFHIGFNYREGIVLSDVSYND--HGNVRPIFHRISLSEMIVPFGS 293
Query: 308 LTEEWYYRSFFDVGEYGYGLSSLPLEPLRDCPPNAVFMDAYFAKNDGMPLKMPNVFCIFE 367
+ D+GEYG G + PL DC ++DA+F+ G P+ + N CI E
Sbjct: 294 PEFPHQRKHALDIGEYGAGYMTNPLSLGCDCKGVIHYLDAHFSDRAGDPITVKNAVCIHE 353
Query: 368 RYAGDVMWRHTEATDPEKLIREVRPEVSLVVRTVSTVGN-YDYINDWEFKQSGSIKVTVG 426
G ++++H++ D V LVV + T N +Y W F Q G+I++ +
Sbjct: 354 EDDG-LLFKHSDFRD-NFATSLVTRATKLVVSQIFTAANXXEYCLYWVFMQDGAIRLDIR 411
Query: 427 LTGMLEVRGTNYTHKDQIEEDVYGTLIAENTIGVRHDHFLTYRLDLDVDGDANSFVKSKL 486
LTG+L Y D E +GT + N H H + R+D +DGD NS
Sbjct: 412 LTGILNT----YILGDDEEAGPWGTRVYPNVNAHNHQHLFSLRIDPRIDGDGNSAAACDA 467
Query: 487 RT----------VRVNDHGSPRKSYWTVDRETARTESAARIKLGSEPVDLLFVNPNKKTK 536
++ + N S + ++ TV ESA D+ NPNK
Sbjct: 468 KSSPYPLGSPENMYGNAFYSEKTTFKTVKDSLTNYESAT-----GRSWDIF--NPNKVNP 520
Query: 537 M-GNLIGYRLVPYGVVGPLLSDDDYPQIRAAFTNYNAWVTAYNISEKWAGGLYADQSRGD 595
G Y+LV L + RA + +++ V Y + + G + Q GD
Sbjct: 521 YSGKPPSYKLVSTQCPPLLAKEGSLVAKRAPWASHSVNVVPYKDNRLYPSGDHVPQWSGD 580
Query: 596 DT--LSVW-SKRNRSIENKDIVLWYTLGFHHVPCQEDFPV-MPTFNGGFELRPSNFFESN 651
+ W + +I+N DI+ ++T G H P EDFP+ MP LRP +FF N
Sbjct: 581 GVRGMREWIGDGSENIDNTDILFFHTFGITHFPAPEDFPLXMPAEPITLMLRPRHFFTEN 640
Query: 652 PVLKVVP 658
P L + P
Sbjct: 641 PGLDIQP 647
>pdb|3HI7|A Chain A, Crystal Structure Of Human Diamine Oxidase
pdb|3HI7|B Chain B, Crystal Structure Of Human Diamine Oxidase
pdb|3HIG|A Chain A, Crystal Structure Of Human Diamine Oxidase In Complex With
The Inhibitor Berenil
pdb|3HIG|B Chain B, Crystal Structure Of Human Diamine Oxidase In Complex With
The Inhibitor Berenil
pdb|3HII|A Chain A, Crystal Structure Of Human Diamine Oxidase In Complex With
The Inhibitor Pentamidine
pdb|3HII|B Chain B, Crystal Structure Of Human Diamine Oxidase In Complex With
The Inhibitor Pentamidine
pdb|3K5T|A Chain A, Crystal Structure Of Human Diamine Oxidase In Space Group
C2221
pdb|3MPH|A Chain A, The Structure Of Human Diamine Oxidase Complexed With An
Inhibitor Aminoguanidine
pdb|3MPH|B Chain B, The Structure Of Human Diamine Oxidase Complexed With An
Inhibitor Aminoguanidine
Length = 731
Score = 152 bits (385), Expect = 4e-37, Method: Compositional matrix adjust.
Identities = 126/422 (29%), Positives = 193/422 (45%), Gaps = 24/422 (5%)
Query: 242 VVQPDGPSFNIVGSQIRWADWEFHLSFDARAGMIISVASIYDPEKQQSRQVLYKGHVSEL 301
+VQP GP F + G+ + + W F +F R+ + V +++ ++ Y+ V E
Sbjct: 282 LVQPHGPRFRLEGNAVLYGGWSF--AFRLRSSSGLQVLNVHF----GGERIAYEVSVQEA 335
Query: 302 FVPYMDLTEEWYYRSFFDVGEYGYGLSSLPLEPLRDCPPNAVFMDAYFAKNDGMPLKMPN 361
Y T + DVG +G G + L P DCP A F+D + + P+ P
Sbjct: 336 VALYGGHTPAGMQTKYLDVG-WGLGSVTHELAPGIDCPETATFLDTFHYYDADDPVHYPR 394
Query: 362 VFCIFERYAGDVMWRHTEAT--DPEKLIREVRPEVSLVVRTVSTVGNYDYINDWEFKQSG 419
C+FE G + RH + ++ +V LV+RT STV N DYI D+ F +G
Sbjct: 395 ALCLFEMPTGVPLRRHFNSNFKGGFNFYAGLKGQV-LVLRTTSTVYNXDYIWDFIFYPNG 453
Query: 420 SIKVTVGLTGMLEVRGTNYTHKDQIEEDVYGTLIAENTIGVRHDHFLTYRLDLDVDGDAN 479
++ + TG V T YT E +GT + + IG H H + YR+DLDV G N
Sbjct: 454 VMEAKMHATGY--VHATFYT----PEGLRHGTRLHTHLIGNIHTHLVHYRVDLDVAGTKN 507
Query: 480 SFVKSKLRTVRVNDHGSPRKSYW--TVDRETARTESAARIKLGSE-PVDLLFVNPNKKTK 536
SF +++ + + SPR T+++ E A + + P LLF +P ++
Sbjct: 508 SFQTLQMKLENITNPWSPRHRVVQPTLEQTQYSWERQAAFRFKRKLPKYLLFTSP-QENP 566
Query: 537 MGNLIGYRLVPYGVVGPLLSDDDYPQIRAAFTNYNAWVTAYNISEKWAGGLYADQSRGDD 596
G+ YRL + + +L + + Y VT Y SE + +Y D
Sbjct: 567 WGHKRSYRLQIHSMADQVLPPGWQEEQAITWARYPLAVTKYRESELCSSSIYHQNDPWDP 626
Query: 597 --TLSVWSKRNRSIENKDIVLWYTLGFHHVPCQEDFP--VMPTFNGGFELRPSNFFESNP 652
+ N +IEN+D+V W T+GF H+P ED P P + GF LRP NFF +P
Sbjct: 627 PVVFEQFLHNNENIENEDLVAWVTVGFLHIPHSEDIPNTATPGNSVGFLLRPFNFFPEDP 686
Query: 653 VL 654
L
Sbjct: 687 SL 688
>pdb|1TU5|A Chain A, Crystal Structure Of Bovine Plasma Copper-Containing Amine
Oxidase
pdb|1TU5|B Chain B, Crystal Structure Of Bovine Plasma Copper-Containing Amine
Oxidase
pdb|2PNC|A Chain A, Crystal Structure Of Bovine Plasma Copper-Containing Amine
Oxidase In Complex With Clonidine
pdb|2PNC|B Chain B, Crystal Structure Of Bovine Plasma Copper-Containing Amine
Oxidase In Complex With Clonidine
Length = 746
Score = 134 bits (338), Expect = 1e-31, Method: Compositional matrix adjust.
Identities = 124/449 (27%), Positives = 192/449 (42%), Gaps = 26/449 (5%)
Query: 212 IIVPVPKSDGTEYRESKLKPPFRPSLKRTTVVQPDGPSFNIVGSQIRWADWEFHLSFDAR 271
+++P + G +S++ P P L+ P GP F++ G+++ + W F A
Sbjct: 272 VVIPDDGTGGFWSLKSQVPPGPTPPLQ----FHPQGPRFSVQGNRVASSLWTFSFGLGAF 327
Query: 272 AGMIISVASIYDPEKQQSRQVLYKGHVSELFVPYMDLTEEWYYRSFFDVGEYGYGLSSLP 331
+G ++D Q R + Y+ + E Y T + D G +G G + P
Sbjct: 328 SG-----PRVFDVRFQGER-LAYEISLQEAGAVYGGNTPAAMLTRYMDSG-FGMGYFATP 380
Query: 332 LEPLRDCPPNAVFMDAYFAKNDGMPLKMPNVFCIFERYAGDVMWRHTEATDPEKLIREVR 391
L DCP A +MD +F P + + FC+FE+ G + RH +D
Sbjct: 381 LIRGVDCPYLATYMDWHFVVESQTPKTLHDAFCVFEQNKGLPLRRHH--SDFLSHYFGGV 438
Query: 392 PEVSLVVRTVSTVGNYDYINDWEFKQSGSIKVTVGLTGMLEVRGTNYTHKDQIEEDVYGT 451
+ LV R+VST+ N DY+ D F +G+I+V + TG + + YG
Sbjct: 439 AQTVLVFRSVSTMLNXDYVWDMVFYPNGAIEVKLHATGYISSAFLFGAARR------YGN 492
Query: 452 LIAENTIGVRHDHFLTYRLDLDVDGDANSFVKSKLRTVRVNDHGSPRKSY--WTVDRETA 509
+ E+T+G H H Y++DLDV G N + V SP V R+
Sbjct: 493 QVGEHTLGPVHTHSAHYKVDLDVGGLENWVWAEDMAFVPTAIPWSPEHQIQRLQVTRKQL 552
Query: 510 RTESAARIKLGSEPVDLLFVNPNKKTKMGNLIGYRLVPYGVVGPLLSDDDYPQIRA-AFT 568
TE A LG L++ + K G+ GYR+ G + + P RA ++
Sbjct: 553 ETEEQAAFPLGGASPRYLYLASKQSNKWGHPRGYRIQTVSFAGGPMPQNS-PMERAFSWG 611
Query: 569 NYNAWVTAYNISEKWAGGLYADQSRGDDTLSVWS-KRNRSIENKDIVLWYTLGFHHVPCQ 627
Y +T +E + ++ T+ N +I KD+V W T GF H+P
Sbjct: 612 RYQLAITQRKETEPSSSSVFNQNDPWTPTVDFSDFINNETIAGKDLVAWVTAGFLHIPHA 671
Query: 628 EDFPVMPTF-NG-GFELRPSNFFESNPVL 654
ED P T NG GF LRP NFF+ P +
Sbjct: 672 EDIPNTVTVGNGVGFFLRPYNFFDQEPSM 700
>pdb|1US1|A Chain A, Crystal Structure Of Human Vascular Adhesion Protein-1
pdb|1US1|B Chain B, Crystal Structure Of Human Vascular Adhesion Protein-1
pdb|1PU4|A Chain A, Crystal Structure Of Human Vascular Adhesion Protein-1
pdb|1PU4|B Chain B, Crystal Structure Of Human Vascular Adhesion Protein-1
pdb|2Y73|A Chain A, The Native Structures Of Soluble Human Primary Amine
Oxidase Aoc3
pdb|2Y73|B Chain B, The Native Structures Of Soluble Human Primary Amine
Oxidase Aoc3
pdb|2Y74|A Chain A, The Crystal Structure Of Human Soluble Primary Amine
Oxidase Aoc3 In The Off-Copper Conformation
pdb|2Y74|B Chain B, The Crystal Structure Of Human Soluble Primary Amine
Oxidase Aoc3 In The Off-Copper Conformation
Length = 763
Score = 131 bits (329), Expect = 1e-30, Method: Compositional matrix adjust.
Identities = 119/414 (28%), Positives = 178/414 (42%), Gaps = 22/414 (5%)
Query: 245 PDGPSFNIVGSQIRWADWEFHLSFDARAGMIISVASIYDPEKQQSRQVLYKGHVSELFVP 304
P GP F++ GS++ + W F A +G I+D Q R ++Y+ + E
Sbjct: 318 PQGPRFSVQGSRVASSLWTFSFGLGAFSG-----PRIFDVRFQGER-LVYEISLQEALAI 371
Query: 305 YMDLTEEWYYRSFFDVGEYGYGLSSLPLEPLRDCPPNAVFMDAYFAKNDGMPLKMPNVFC 364
Y + + D G +G G + PL DCP A ++D +F P + + FC
Sbjct: 372 YGGNSPAAMTTRYVD-GGFGMGKYTTPLTRGVDCPYLATYVDWHFLLESQAPKTIRDAFC 430
Query: 365 IFERYAGDVMWRHTEATDPEKLIREVRPEVSLVVRTVSTVGNYDYINDWEFKQSGSIKVT 424
+FE+ G + RH +D E LVVR++ST+ N DY+ D F SG+I++
Sbjct: 431 VFEQNQGLPLRRHH--SDLYSHYFGGLAETVLVVRSMSTLLNXDYVWDTVFHPSGAIEIR 488
Query: 425 VGLTGMLEVRGT-NYTHKDQIEEDVYGTLIAENTIGVRHDHFLTYRLDLDVDGDANSFVK 483
TG + T K YG ++E+T+G H H +++DLDV G N
Sbjct: 489 FYATGYISSAFLFGATGK-------YGNQVSEHTLGTVHTHSAHFKVDLDVAGLENWVWA 541
Query: 484 SKLRTVRVNDHGSPRKSY--WTVDRETARTESAARIKLGSEPVDLLFVNPNKKTKMGNLI 541
+ V + SP V R+ E A +GS L++ N K G+
Sbjct: 542 EDMVFVPMAVPWSPEHQLQRLQVTRKLLEMEEQAAFLVGSATPRYLYLASNHSNKWGHPR 601
Query: 542 GYRLVPYGVVGPLLSDDDYPQIRAAFTNYNAWVTAYNISEKWAGGLYADQSRGDDTLSVW 601
GYR+ G L + ++ Y VT E + ++ T+
Sbjct: 602 GYRIQMLSFAGEPLPQNSSMARGFSWERYQLAVTQRKEEEPSSSSVFNQNDPWAPTVDFS 661
Query: 602 S-KRNRSIENKDIVLWYTLGFHHVPCQEDFPVMPTF-NG-GFELRPSNFFESNP 652
N +I KD+V W T GF H+P ED P T NG GF LRP NFF+ +P
Sbjct: 662 DFINNETIAGKDLVAWVTAGFLHIPHAEDIPNTVTVGNGVGFFLRPYNFFDEDP 715
>pdb|3ALA|A Chain A, Crystal Structure Of Vascular Adhesion Protein-1 In Space
Group C2
pdb|3ALA|B Chain B, Crystal Structure Of Vascular Adhesion Protein-1 In Space
Group C2
pdb|3ALA|C Chain C, Crystal Structure Of Vascular Adhesion Protein-1 In Space
Group C2
pdb|3ALA|D Chain D, Crystal Structure Of Vascular Adhesion Protein-1 In Space
Group C2
pdb|3ALA|E Chain E, Crystal Structure Of Vascular Adhesion Protein-1 In Space
Group C2
pdb|3ALA|F Chain F, Crystal Structure Of Vascular Adhesion Protein-1 In Space
Group C2
pdb|3ALA|G Chain G, Crystal Structure Of Vascular Adhesion Protein-1 In Space
Group C2
Length = 748
Score = 130 bits (328), Expect = 2e-30, Method: Compositional matrix adjust.
Identities = 119/414 (28%), Positives = 178/414 (42%), Gaps = 22/414 (5%)
Query: 245 PDGPSFNIVGSQIRWADWEFHLSFDARAGMIISVASIYDPEKQQSRQVLYKGHVSELFVP 304
P GP F++ GS++ + W F A +G I+D Q R ++Y+ + E
Sbjct: 303 PQGPRFSVQGSRVASSLWTFSFGLGAFSG-----PRIFDVRFQGER-LVYEISLQEALAI 356
Query: 305 YMDLTEEWYYRSFFDVGEYGYGLSSLPLEPLRDCPPNAVFMDAYFAKNDGMPLKMPNVFC 364
Y + + D G +G G + PL DCP A ++D +F P + + FC
Sbjct: 357 YGGNSPAAMTTRYVD-GGFGMGKYTTPLTRGVDCPYLATYVDWHFLLESQAPKTIRDAFC 415
Query: 365 IFERYAGDVMWRHTEATDPEKLIREVRPEVSLVVRTVSTVGNYDYINDWEFKQSGSIKVT 424
+FE+ G + RH +D E LVVR++ST+ N DY+ D F SG+I++
Sbjct: 416 VFEQNQGLPLRRHH--SDLYSHYFGGLAETVLVVRSMSTLLNXDYVWDTVFHPSGAIEIR 473
Query: 425 VGLTGMLEVRGT-NYTHKDQIEEDVYGTLIAENTIGVRHDHFLTYRLDLDVDGDANSFVK 483
TG + T K YG ++E+T+G H H +++DLDV G N
Sbjct: 474 FYATGYISSAFLFGATGK-------YGNQVSEHTLGTVHTHSAHFKVDLDVAGLENWVWA 526
Query: 484 SKLRTVRVNDHGSPRKSY--WTVDRETARTESAARIKLGSEPVDLLFVNPNKKTKMGNLI 541
+ V + SP V R+ E A +GS L++ N K G+
Sbjct: 527 EDMVFVPMAVPWSPEHQLQRLQVTRKLLEMEEQAAFLVGSATPRYLYLASNHSNKWGHPR 586
Query: 542 GYRLVPYGVVGPLLSDDDYPQIRAAFTNYNAWVTAYNISEKWAGGLYADQSRGDDTLSVW 601
GYR+ G L + ++ Y VT E + ++ T+
Sbjct: 587 GYRIQMLSFAGEPLPQNSSMARGFSWERYQLAVTQRKEEEPSSSSVFNQNDPWAPTVDFS 646
Query: 602 S-KRNRSIENKDIVLWYTLGFHHVPCQEDFPVMPTF-NG-GFELRPSNFFESNP 652
N +I KD+V W T GF H+P ED P T NG GF LRP NFF+ +P
Sbjct: 647 DFINNETIAGKDLVAWVTAGFLHIPHAEDIPNTVTVGNGVGFFLRPYNFFDEDP 700
>pdb|2C10|A Chain A, The Structure Of A Truncated, Soluble Version Of
Semicarbazide-Sensitive Amine Oxidase
pdb|2C10|B Chain B, The Structure Of A Truncated, Soluble Version Of
Semicarbazide-Sensitive Amine Oxidase
pdb|2C10|C Chain C, The Structure Of A Truncated, Soluble Version Of
Semicarbazide-Sensitive Amine Oxidase
pdb|2C10|D Chain D, The Structure Of A Truncated, Soluble Version Of
Semicarbazide-Sensitive Amine Oxidase
pdb|2C11|A Chain A, Crystal Structure Of The 2-Hydrazinopyridine Of
Semicarbazide-Sensitive Amine Oxidase
pdb|2C11|B Chain B, Crystal Structure Of The 2-Hydrazinopyridine Of
Semicarbazide-Sensitive Amine Oxidase
pdb|2C11|C Chain C, Crystal Structure Of The 2-Hydrazinopyridine Of
Semicarbazide-Sensitive Amine Oxidase
pdb|2C11|D Chain D, Crystal Structure Of The 2-Hydrazinopyridine Of
Semicarbazide-Sensitive Amine Oxidase
Length = 735
Score = 130 bits (327), Expect = 2e-30, Method: Compositional matrix adjust.
Identities = 119/414 (28%), Positives = 178/414 (42%), Gaps = 22/414 (5%)
Query: 245 PDGPSFNIVGSQIRWADWEFHLSFDARAGMIISVASIYDPEKQQSRQVLYKGHVSELFVP 304
P GP F++ GS++ + W F A +G I+D Q R ++Y+ + E
Sbjct: 290 PQGPRFSVQGSRVASSLWTFSFGLGAFSG-----PRIFDVRFQGER-LVYEISLQEALAI 343
Query: 305 YMDLTEEWYYRSFFDVGEYGYGLSSLPLEPLRDCPPNAVFMDAYFAKNDGMPLKMPNVFC 364
Y + + D G +G G + PL DCP A ++D +F P + + FC
Sbjct: 344 YGGNSPAAMTTRYVD-GGFGMGKYTTPLTRGVDCPYLATYVDWHFLLESQAPKTIRDAFC 402
Query: 365 IFERYAGDVMWRHTEATDPEKLIREVRPEVSLVVRTVSTVGNYDYINDWEFKQSGSIKVT 424
+FE+ G + RH +D E LVVR++ST+ N DY+ D F SG+I++
Sbjct: 403 VFEQNQGLPLRRHH--SDLYSHYFGGLAETVLVVRSMSTLLNXDYVWDTVFHPSGAIEIR 460
Query: 425 VGLTGMLEVRGT-NYTHKDQIEEDVYGTLIAENTIGVRHDHFLTYRLDLDVDGDANSFVK 483
TG + T K YG ++E+T+G H H +++DLDV G N
Sbjct: 461 FYATGYISSAFLFGATGK-------YGNQVSEHTLGTVHTHSAHFKVDLDVAGLENWVWA 513
Query: 484 SKLRTVRVNDHGSPRKSY--WTVDRETARTESAARIKLGSEPVDLLFVNPNKKTKMGNLI 541
+ V + SP V R+ E A +GS L++ N K G+
Sbjct: 514 EDMVFVPMAVPWSPEHQLQRLQVTRKLLEMEEQAAFLVGSATPRYLYLASNHSNKWGHPR 573
Query: 542 GYRLVPYGVVGPLLSDDDYPQIRAAFTNYNAWVTAYNISEKWAGGLYADQSRGDDTLSVW 601
GYR+ G L + ++ Y VT E + ++ T+
Sbjct: 574 GYRIQMLSFAGEPLPQNSSMARGFSWERYQLAVTQRKEEEPSSSSVFNQNDPWAPTVDFS 633
Query: 602 S-KRNRSIENKDIVLWYTLGFHHVPCQEDFPVMPTF-NG-GFELRPSNFFESNP 652
N +I KD+V W T GF H+P ED P T NG GF LRP NFF+ +P
Sbjct: 634 DFINNETIAGKDLVAWVTAGFLHIPHAEDIPNTVTVGNGVGFFLRPYNFFDEDP 687
>pdb|3PGB|A Chain A, Crystal Structure Of Aspergillus Nidulans Amine Oxidase
Length = 797
Score = 123 bits (309), Expect = 3e-28, Method: Compositional matrix adjust.
Identities = 115/452 (25%), Positives = 201/452 (44%), Gaps = 32/452 (7%)
Query: 217 PKSDGTEYRESKLKPPFRPSLKRT--TVVQPDGPSFNIVGSQ--IRWADWEFHLSFDARA 272
P DG + ++ + P P ++ ++ PDG +++ + + W D+ F+++F+
Sbjct: 304 PNVDGA-WAHTEQRGPVPPQDRKQPPVMIAPDGARYSVDAERKYVTWMDFSFYIAFNRDT 362
Query: 273 GMIISVASIYDPEKQQSRQVLYKGHVSELFVPYMDLTEEWYYRSFFDVGEYGYGLSSLPL 332
G+ S++D K + ++VLY+ + E Y ++ D YG+G + L
Sbjct: 363 GL-----SLFDI-KYKGQRVLYELGLQEALAHYAANDPVQSSVAYLD-SYYGFGPYAFEL 415
Query: 333 EPLRDCPPNAVFMDAYFAKNDGMPLKMPNVFCIFERYAGDVMWRHTEATDPEKLIREVRP 392
DCP A +++ F K++ + + C+FE A M RH+ + V
Sbjct: 416 LKGYDCPSYASYLNTSFYKDEETHTHV-DSLCLFEFDADYPMARHSTSE-----FVSVTK 469
Query: 393 EVSLVVRTVSTVGNYDYINDWEFKQSGSIKVTVGLTGMLEVRGTNYTHKDQIEEDVYGTL 452
V +R+VST+GN DY+ + F G+I V V +G ++ + Y +Q +G
Sbjct: 470 NVYFTLRSVSTIGNXDYMFSYNFHMDGTIGVEVRASGYIQ---SAYYANNQD----FGYQ 522
Query: 453 IAENTIGVRHDHFLTYRLDLDVDGDANS--FVKSKLRTVRVNDHGSPRKSYWTVDRETAR 510
I ++ G HDH L ++ D D+ G N+ V T + + G+ ++ + R
Sbjct: 523 IHDSLSGSMHDHVLNFKADFDILGPNNTIELVSVVPVTKQFSWSGNKTRNTMQLGRSFIH 582
Query: 511 TESAARIKLG-SEPVDLLFVNPNKKTKMGNLIGYRLVPYGVVGPLLSDDDYPQIRAA-FT 568
+E AR+ G + L VN +K K G GYR++P L + + AA +
Sbjct: 583 SEDEARLNWGFNGQTQLHVVNQDKPNKFGEPRGYRILPSAGTAHLTVLNSSNLVHAAHWA 642
Query: 569 NYNAWVTAYNISEKWAGGLYADQSRGDDTLSVWSKRN-RSIENKDIVLWYTLGFHHVPCQ 627
Y+ VT + E + Y Q + + + N S+ D+V+W LG HHVP
Sbjct: 643 EYDVQVTRQHDFEPTSAHPYNSQDIHNPPVDFSTFFNGESLNQTDLVVWLNLGMHHVPHT 702
Query: 628 EDFP--VMPTFNGGFELRPSNFFESNPVLKVV 657
D P V T + G P N+ +P + V
Sbjct: 703 GDLPNTVFTTAHSGVAFTPLNYLPGDPSRETV 734
>pdb|1N9E|A Chain A, Crystal Structure Of Pichia Pastoris Lysyl Oxidase Pplo
pdb|1N9E|B Chain B, Crystal Structure Of Pichia Pastoris Lysyl Oxidase Pplo
pdb|1N9E|C Chain C, Crystal Structure Of Pichia Pastoris Lysyl Oxidase Pplo
pdb|1N9E|D Chain D, Crystal Structure Of Pichia Pastoris Lysyl Oxidase Pplo
Length = 787
Score = 102 bits (253), Expect = 9e-22, Method: Compositional matrix adjust.
Identities = 109/425 (25%), Positives = 181/425 (42%), Gaps = 34/425 (8%)
Query: 238 KRTTVVQPDGPSFNIVGSQ--IRWADWEFHLSFDARAGMIISVASIYDPEKQQSRQVLYK 295
K +V+P+G + G + W DW F+ S+ G+ S YD + R ++Y+
Sbjct: 321 KSPRLVEPEGRRWAYDGEEEYFSWMDWGFYTSWSRDTGI-----SFYDITFKGER-IVYE 374
Query: 296 GHVSELFVPYMDLTEEWYYRSFFDVGEYGYGLSSLPLEPLRDCPPNAVFMDAYFAKNDGM 355
+ EL Y + + +F+ YG G + L P DCP A YF +
Sbjct: 375 LSLQELIAEYGS-DDPFNQHTFYSDISYGVG-NRFSLVPGYDCPATA----GYFTTDTFE 428
Query: 356 PLKMPN---VFCIFERYAGDVMWRHTEATDPEKLIREVRPEVSLVVRTVSTVGNYDYIND 412
+ N +C+FE + RHT A+ + +L VR +ST+GN DY
Sbjct: 429 YDEFYNRTLSYCVFENQEDYSLLRHTGAS-----YSAITQNPTLNVRFISTIGNXDYNFL 483
Query: 413 WEFKQSGSIKVTVGLTGMLEVRGTNYTHKDQIEEDVYGTLIAENTIGVRHDHFLTYRLDL 472
++F G+++V+V G ++ + + YG I + G HDH L Y++DL
Sbjct: 484 YKFFLDGTLEVSVRAAGYIQA-----GYWNPETSAPYGLKIHDVLSGSFHDHVLNYKVDL 538
Query: 473 DVDGDANSFVKSKLRTVRVNDHGSPRKSYWT--VDRETARTESAARIKLGSEPVDLLFVN 530
DV G N K ++ V V +P Y T + RE E I +L +
Sbjct: 539 DVGGTKNRASKYVMKDVDVEYPWAPGTVYNTKQIAREVLEKEDFNGINWPENGQGILLIE 598
Query: 531 PNKKTK-MGNLIGYRLVPYGV-VGPLLSDDDYPQIRAAFTNYNAWVTAYNISEKWAGGLY 588
++T GN Y ++P G V ++ + + N ++T + E +
Sbjct: 599 SAEETNSFGNPRAYNIMPGGGGVHRIVKNSRSGPETQNWARSNLFLTKHKDEELRSSTAL 658
Query: 589 ADQSRGDDTLSVWS-KRNRSIENKDIVLWYTLGFHHVPCQEDFP--VMPTFNGGFELRPS 645
+ D ++ + + S++ +DIV W LG HH+P D P + T + F L P
Sbjct: 659 NTNALYDPPVNFNAFLDDESLDGEDIVAWVNLGLHHLPNSNDLPNTIFSTAHASFMLTPF 718
Query: 646 NFFES 650
N+F+S
Sbjct: 719 NYFDS 723
>pdb|1RKY|A Chain A, Pplo + Xe
pdb|1W7C|A Chain A, Pplo At 1.23 Angstroms
Length = 747
Score = 100 bits (250), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 108/425 (25%), Positives = 182/425 (42%), Gaps = 34/425 (8%)
Query: 238 KRTTVVQPDGPSFNIVGSQ--IRWADWEFHLSFDARAGMIISVASIYDPEKQQSRQVLYK 295
K +V+P+G + G + W DW F+ S+ G+ S YD + R ++Y+
Sbjct: 281 KSPRLVEPEGRRWAYDGDEEYFSWMDWGFYTSWSRDTGI-----SFYDITFKGER-IVYE 334
Query: 296 GHVSELFVPYMDLTEEWYYRSFFDVGEYGYGLSSLPLEPLRDCPPNAVFMDAYFAKNDGM 355
+ EL Y + + +F+ YG G + L P DCP A YF +
Sbjct: 335 LSLQELIAEYGS-DDPFNQHTFYSDISYGVG-NRFSLVPGYDCPSTA----GYFTTDTFE 388
Query: 356 PLKMPN---VFCIFERYAGDVMWRHTEATDPEKLIREVRPEVSLVVRTVSTVGNYDYIND 412
+ N +C+FE + RHT A+ + +L VR +ST+GN DY
Sbjct: 389 YDEFYNRTLSYCVFENQEDYSLLRHTGAS-----YSAITQNPTLNVRFISTIGNXDYNFL 443
Query: 413 WEFKQSGSIKVTVGLTGMLEVRGTNYTHKDQIEEDVYGTLIAENTIGVRHDHFLTYRLDL 472
++F G+++V+V G ++ + + YG I + G HDH L Y++DL
Sbjct: 444 YKFFLDGTLEVSVRAAGYIQA-----GYWNPETSAPYGLKIHDVLSGSFHDHVLNYKVDL 498
Query: 473 DVDGDANSFVKSKLRTVRVNDHGSPRKSYWT--VDRETARTESAARIKLGSEPVDLLFVN 530
DV G N + ++ V V +P Y T + RE E I +L +
Sbjct: 499 DVGGTKNRASQYVMKDVDVEYPWAPGTVYNTKQIAREVFENEDFNGINWPENGQGILLIE 558
Query: 531 PNKKTK-MGNLIGYRLVPYGV-VGPLLSDDDYPQIRAAFTNYNAWVTAYNISEKWAGGLY 588
++T GN Y ++P G V ++ + + N ++T + +E +
Sbjct: 559 SAEETNSFGNPRAYNIMPGGGGVHRIVKNSRSGPETQNWARSNLFLTKHKDTELRSSTAL 618
Query: 589 ADQSRGDDTLSVWS-KRNRSIENKDIVLWYTLGFHHVPCQEDFP--VMPTFNGGFELRPS 645
+ D ++ + + S++ +DIV W LG HH+P D P + T + F L P
Sbjct: 619 NTNALYDPPVNFNAFLDDESLDGEDIVAWVNLGLHHLPNSNDLPNTIFSTAHASFMLTPF 678
Query: 646 NFFES 650
N+F+S
Sbjct: 679 NYFDS 683
>pdb|3SR9|A Chain A, Crystal Structure Of Mouse Ptpsigma
Length = 583
Score = 30.8 bits (68), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 25/95 (26%), Positives = 42/95 (44%), Gaps = 10/95 (10%)
Query: 70 LSWLRNETTTNPPRQAFVV----ARIDHQTHEIIVDLSLQGITSKKTYNGYGYPLLTGEE 125
L++LR T NPP +V A + I++D L+ I ++KT + YG+ L +
Sbjct: 209 LAFLRRVKTCNPPDAGPIVVHCSAGVGRTGCFIVIDAMLERIKTEKTVDVYGHVTLMRSQ 268
Query: 126 QEDANKLASTYPLFVASISKRGLKLEEVVCGSFTV 160
+ + Y ++ LE V CG+ V
Sbjct: 269 RNYMVQTEDQYGFIHEAL------LEAVGCGNTEV 297
>pdb|1DQ8|A Chain A, Complex Of The Catalytic Portion Of Human Hmg-Coa
Reductase With Hmg And Coa
pdb|1DQ8|B Chain B, Complex Of The Catalytic Portion Of Human Hmg-Coa
Reductase With Hmg And Coa
pdb|1DQ8|C Chain C, Complex Of The Catalytic Portion Of Human Hmg-Coa
Reductase With Hmg And Coa
pdb|1DQ8|D Chain D, Complex Of The Catalytic Portion Of Human Hmg-Coa
Reductase With Hmg And Coa
pdb|1DQ9|A Chain A, Complex Of Catalytic Portion Of Human Hmg-Coa Reductase
With Hmg-Coa
pdb|1DQ9|B Chain B, Complex Of Catalytic Portion Of Human Hmg-Coa Reductase
With Hmg-Coa
pdb|1DQ9|C Chain C, Complex Of Catalytic Portion Of Human Hmg-Coa Reductase
With Hmg-Coa
pdb|1DQ9|D Chain D, Complex Of Catalytic Portion Of Human Hmg-Coa Reductase
With Hmg-Coa
pdb|1DQA|A Chain A, Complex Of The Catalytic Portion Of Human Hmg-Coa
Reductase With Hmg, Coa, And Nadp+
pdb|1DQA|B Chain B, Complex Of The Catalytic Portion Of Human Hmg-Coa
Reductase With Hmg, Coa, And Nadp+
pdb|1DQA|C Chain C, Complex Of The Catalytic Portion Of Human Hmg-Coa
Reductase With Hmg, Coa, And Nadp+
pdb|1DQA|D Chain D, Complex Of The Catalytic Portion Of Human Hmg-Coa
Reductase With Hmg, Coa, And Nadp+
pdb|1HW8|A Chain A, Complex Of The Catalytic Portion Of Human Hmg-Coa
Reductase With Compactin (Also Known As Mevastatin)
pdb|1HW8|B Chain B, Complex Of The Catalytic Portion Of Human Hmg-Coa
Reductase With Compactin (Also Known As Mevastatin)
pdb|1HW8|C Chain C, Complex Of The Catalytic Portion Of Human Hmg-Coa
Reductase With Compactin (Also Known As Mevastatin)
pdb|1HW8|D Chain D, Complex Of The Catalytic Portion Of Human Hmg-Coa
Reductase With Compactin (Also Known As Mevastatin)
pdb|1HW9|A Chain A, Complex Of The Catalytic Portion Of Human Hmg-Coa
Reductase With Simvastatin
pdb|1HW9|B Chain B, Complex Of The Catalytic Portion Of Human Hmg-Coa
Reductase With Simvastatin
pdb|1HW9|C Chain C, Complex Of The Catalytic Portion Of Human Hmg-Coa
Reductase With Simvastatin
pdb|1HW9|D Chain D, Complex Of The Catalytic Portion Of Human Hmg-Coa
Reductase With Simvastatin
pdb|1HWI|A Chain A, Complex Of The Catalytic Portion Of Human Hmg-Coa
Reductase With Fluvastatin
pdb|1HWI|B Chain B, Complex Of The Catalytic Portion Of Human Hmg-Coa
Reductase With Fluvastatin
pdb|1HWI|C Chain C, Complex Of The Catalytic Portion Of Human Hmg-Coa
Reductase With Fluvastatin
pdb|1HWI|D Chain D, Complex Of The Catalytic Portion Of Human Hmg-Coa
Reductase With Fluvastatin
pdb|1HWJ|A Chain A, Complex Of The Catalytic Portion Of Human Hmg-Coa
Reductase With Cerivastatin
pdb|1HWJ|B Chain B, Complex Of The Catalytic Portion Of Human Hmg-Coa
Reductase With Cerivastatin
pdb|1HWJ|C Chain C, Complex Of The Catalytic Portion Of Human Hmg-Coa
Reductase With Cerivastatin
pdb|1HWJ|D Chain D, Complex Of The Catalytic Portion Of Human Hmg-Coa
Reductase With Cerivastatin
pdb|1HWK|A Chain A, Complex Of The Catalytic Portion Of Human Hmg-Coa
Reductase With Atorvastatin
pdb|1HWK|B Chain B, Complex Of The Catalytic Portion Of Human Hmg-Coa
Reductase With Atorvastatin
pdb|1HWK|C Chain C, Complex Of The Catalytic Portion Of Human Hmg-Coa
Reductase With Atorvastatin
pdb|1HWK|D Chain D, Complex Of The Catalytic Portion Of Human Hmg-Coa
Reductase With Atorvastatin
pdb|1HWL|A Chain A, Complex Of The Catalytic Portion Of Human Hmg-Coa
Reductase With Rosuvastatin (Formally Known As Zd4522)
pdb|1HWL|B Chain B, Complex Of The Catalytic Portion Of Human Hmg-Coa
Reductase With Rosuvastatin (Formally Known As Zd4522)
pdb|1HWL|C Chain C, Complex Of The Catalytic Portion Of Human Hmg-Coa
Reductase With Rosuvastatin (Formally Known As Zd4522)
pdb|1HWL|D Chain D, Complex Of The Catalytic Portion Of Human Hmg-Coa
Reductase With Rosuvastatin (Formally Known As Zd4522)
Length = 467
Score = 30.4 bits (67), Expect = 2.9, Method: Compositional matrix adjust.
Identities = 14/30 (46%), Positives = 18/30 (60%)
Query: 539 NLIGYRLVPYGVVGPLLSDDDYPQIRAAFT 568
N+IGY +P GV GPL D+ Q+ A T
Sbjct: 108 NVIGYMPIPVGVAGPLCLDEKEFQVPMATT 137
>pdb|3UZ0|A Chain A, Crystal Structure Of Spoiiiah And Spoiiq Complex
pdb|3UZ0|C Chain C, Crystal Structure Of Spoiiiah And Spoiiq Complex
Length = 133
Score = 30.4 bits (67), Expect = 3.0, Method: Composition-based stats.
Identities = 20/63 (31%), Positives = 32/63 (50%), Gaps = 6/63 (9%)
Query: 450 GTLIAENTIGVRHDHFLTYRLDLDVDGDANSFVKSKLRTVRVNDHGSPRKSYWTVDRETA 509
GT++ E D F TYRLDL+ DA S + +L + +D + ++ D+ TA
Sbjct: 9 GTVVTETA---DDDLFTTYRLDLE---DARSKEREELNAIVSSDDATAKEKSEAYDKXTA 62
Query: 510 RTE 512
+E
Sbjct: 63 LSE 65
>pdb|2Q1L|A Chain A, Design And Synthesis Of Pyrrole-Based, Hepatoselective
Hmg-Coa Reductase Inhibitors
pdb|2Q1L|B Chain B, Design And Synthesis Of Pyrrole-Based, Hepatoselective
Hmg-Coa Reductase Inhibitors
pdb|2Q1L|C Chain C, Design And Synthesis Of Pyrrole-Based, Hepatoselective
Hmg-Coa Reductase Inhibitors
pdb|2Q1L|D Chain D, Design And Synthesis Of Pyrrole-Based, Hepatoselective
Hmg-Coa Reductase Inhibitors
pdb|2Q6B|A Chain A, Design And Synthesis Of Novel, Conformationally Restricted
Hmg-Coa Reductase Inhibitors
pdb|2Q6B|B Chain B, Design And Synthesis Of Novel, Conformationally Restricted
Hmg-Coa Reductase Inhibitors
pdb|2Q6B|C Chain C, Design And Synthesis Of Novel, Conformationally Restricted
Hmg-Coa Reductase Inhibitors
pdb|2Q6B|D Chain D, Design And Synthesis Of Novel, Conformationally Restricted
Hmg-Coa Reductase Inhibitors
pdb|2Q6C|A Chain A, Design And Synthesis Of Novel, Conformationally Restricted
Hmg-Coa Reductase Inhibitors
pdb|2Q6C|B Chain B, Design And Synthesis Of Novel, Conformationally Restricted
Hmg-Coa Reductase Inhibitors
pdb|2Q6C|C Chain C, Design And Synthesis Of Novel, Conformationally Restricted
Hmg-Coa Reductase Inhibitors
pdb|2Q6C|D Chain D, Design And Synthesis Of Novel, Conformationally Restricted
Hmg-Coa Reductase Inhibitors
pdb|3BGL|A Chain A, Hepatoselectivity Of Statins: Design And Synthesis Of 4-
Sulfamoyl Pyrroles As Hmg-Coa Reductase Inhibitors
pdb|3BGL|B Chain B, Hepatoselectivity Of Statins: Design And Synthesis Of 4-
Sulfamoyl Pyrroles As Hmg-Coa Reductase Inhibitors
pdb|3BGL|C Chain C, Hepatoselectivity Of Statins: Design And Synthesis Of 4-
Sulfamoyl Pyrroles As Hmg-Coa Reductase Inhibitors
pdb|3BGL|D Chain D, Hepatoselectivity Of Statins: Design And Synthesis Of 4-
Sulfamoyl Pyrroles As Hmg-Coa Reductase Inhibitors
pdb|2R4F|A Chain A, Substituted Pyrazoles As Hepatselective Hmg-Coa Reductase
Inhibitors
pdb|2R4F|B Chain B, Substituted Pyrazoles As Hepatselective Hmg-Coa Reductase
Inhibitors
pdb|2R4F|C Chain C, Substituted Pyrazoles As Hepatselective Hmg-Coa Reductase
Inhibitors
pdb|2R4F|D Chain D, Substituted Pyrazoles As Hepatselective Hmg-Coa Reductase
Inhibitors
pdb|3CCT|A Chain A, Thermodynamic And Structure Guided Design Of Statin
Hmg-Coa Reductase Inhibitors
pdb|3CCT|B Chain B, Thermodynamic And Structure Guided Design Of Statin
Hmg-Coa Reductase Inhibitors
pdb|3CCT|C Chain C, Thermodynamic And Structure Guided Design Of Statin
Hmg-Coa Reductase Inhibitors
pdb|3CCT|D Chain D, Thermodynamic And Structure Guided Design Of Statin
Hmg-Coa Reductase Inhibitors
pdb|3CCW|A Chain A, Thermodynamic And Structure Guided Design Of Statin
Hmg-Coa Reductase Inhibitors
pdb|3CCW|B Chain B, Thermodynamic And Structure Guided Design Of Statin
Hmg-Coa Reductase Inhibitors
pdb|3CCW|C Chain C, Thermodynamic And Structure Guided Design Of Statin
Hmg-Coa Reductase Inhibitors
pdb|3CCW|D Chain D, Thermodynamic And Structure Guided Design Of Statin
Hmg-Coa Reductase Inhibitors
pdb|3CCZ|A Chain A, Thermodynamic And Structure Guided Design Of Statin
Hmg-Coa Reductase Inhibitors
pdb|3CCZ|B Chain B, Thermodynamic And Structure Guided Design Of Statin
Hmg-Coa Reductase Inhibitors
pdb|3CCZ|C Chain C, Thermodynamic And Structure Guided Design Of Statin
Hmg-Coa Reductase Inhibitors
pdb|3CCZ|D Chain D, Thermodynamic And Structure Guided Design Of Statin
Hmg-Coa Reductase Inhibitors
pdb|3CD0|A Chain A, Thermodynamic And Structure Guided Design Of Statin
Hmg-Coa Reductase Inhibitors
pdb|3CD0|B Chain B, Thermodynamic And Structure Guided Design Of Statin
Hmg-Coa Reductase Inhibitors
pdb|3CD0|C Chain C, Thermodynamic And Structure Guided Design Of Statin
Hmg-Coa Reductase Inhibitors
pdb|3CD0|D Chain D, Thermodynamic And Structure Guided Design Of Statin
Hmg-Coa Reductase Inhibitors
pdb|3CD5|A Chain A, Thermodynamic And Structure Guided Design Of Statin
Hmg-Coa Reductase Inhibitors
pdb|3CD5|B Chain B, Thermodynamic And Structure Guided Design Of Statin
Hmg-Coa Reductase Inhibitors
pdb|3CD5|C Chain C, Thermodynamic And Structure Guided Design Of Statin
Hmg-Coa Reductase Inhibitors
pdb|3CD5|D Chain D, Thermodynamic And Structure Guided Design Of Statin
Hmg-Coa Reductase Inhibitors
pdb|3CD7|A Chain A, Thermodynamic And Structure Guided Design Of Statin
Hmg-Coa Reductase Inhibitors
pdb|3CD7|B Chain B, Thermodynamic And Structure Guided Design Of Statin
Hmg-Coa Reductase Inhibitors
pdb|3CD7|C Chain C, Thermodynamic And Structure Guided Design Of Statin
Hmg-Coa Reductase Inhibitors
pdb|3CD7|D Chain D, Thermodynamic And Structure Guided Design Of Statin
Hmg-Coa Reductase Inhibitors
pdb|3CDA|A Chain A, Thermodynamic And Structure Guided Design Of Statin
Hmg-Coa Reductase Inhibitors
pdb|3CDA|B Chain B, Thermodynamic And Structure Guided Design Of Statin
Hmg-Coa Reductase Inhibitors
pdb|3CDA|C Chain C, Thermodynamic And Structure Guided Design Of Statin
Hmg-Coa Reductase Inhibitors
pdb|3CDA|D Chain D, Thermodynamic And Structure Guided Design Of Statin
Hmg-Coa Reductase Inhibitors
pdb|3CDB|A Chain A, Thermodynamic And Structure Guided Design Of Statin
Hmg-Coa Reductase Inhibitors
pdb|3CDB|B Chain B, Thermodynamic And Structure Guided Design Of Statin
Hmg-Coa Reductase Inhibitors
pdb|3CDB|C Chain C, Thermodynamic And Structure Guided Design Of Statin
Hmg-Coa Reductase Inhibitors
pdb|3CDB|D Chain D, Thermodynamic And Structure Guided Design Of Statin
Hmg-Coa Reductase Inhibitors
Length = 441
Score = 30.4 bits (67), Expect = 3.2, Method: Compositional matrix adjust.
Identities = 14/30 (46%), Positives = 18/30 (60%)
Query: 539 NLIGYRLVPYGVVGPLLSDDDYPQIRAAFT 568
N+IGY +P GV GPL D+ Q+ A T
Sbjct: 95 NVIGYMPIPVGVAGPLCLDEKEFQVPMATT 124
>pdb|2FH7|A Chain A, Crystal Structure Of The Phosphatase Domains Of Human Ptp
Sigma
Length = 595
Score = 30.4 bits (67), Expect = 3.7, Method: Compositional matrix adjust.
Identities = 25/95 (26%), Positives = 41/95 (43%), Gaps = 10/95 (10%)
Query: 70 LSWLRNETTTNPPRQAFVV----ARIDHQTHEIIVDLSLQGITSKKTYNGYGYPLLTGEE 125
L++LR T NPP +V A + I++D L+ I +KT + YG+ L +
Sbjct: 207 LAFLRRVKTCNPPDAGPIVVHCSAGVGRTGCFIVIDAMLERIKPEKTVDVYGHVTLMRSQ 266
Query: 126 QEDANKLASTYPLFVASISKRGLKLEEVVCGSFTV 160
+ + Y ++ LE V CG+ V
Sbjct: 267 RNYMVQTEDQYSFIHEAL------LEAVGCGNTEV 295
>pdb|3TUF|A Chain A, Structure Of The Spoiiq-Spoiiiah Pore Forming Complex
Length = 197
Score = 29.6 bits (65), Expect = 5.9, Method: Composition-based stats.
Identities = 24/82 (29%), Positives = 39/82 (47%), Gaps = 9/82 (10%)
Query: 434 RGTNYTHKDQ---IEEDVYGTLIAENTIGVRHDHFLTYRLDLDVDGDANSFVKSKLRTVR 490
+GT + D+ E GT++ E D F TYRLDL+ DA S + +L +
Sbjct: 54 KGTKDSSADKETSAEASEKGTVVTETA---DDDLFTTYRLDLE---DARSKEREELNAIV 107
Query: 491 VNDHGSPRKSYWTVDRETARTE 512
+D + ++ D+ TA +E
Sbjct: 108 SSDDATAKEKSEAYDKMTALSE 129
>pdb|1AZD|A Chain A, Concanavalin From Canavalia Brasiliensis
pdb|1AZD|B Chain B, Concanavalin From Canavalia Brasiliensis
pdb|1AZD|C Chain C, Concanavalin From Canavalia Brasiliensis
pdb|1AZD|D Chain D, Concanavalin From Canavalia Brasiliensis
pdb|3JU9|A Chain A, Crystal Structure Of A Lectin From Canavalia Brasiliensis
Seed (conbr) Complexed With Alpha-aminobutyric Acid
pdb|4H55|A Chain A, Crystal Structure Of Canavalia Brasiliensis Seed Lectin
(Conbr) In Complex With Beta-D-Ribofuranose
Length = 237
Score = 29.3 bits (64), Expect = 6.7, Method: Compositional matrix adjust.
Identities = 15/45 (33%), Positives = 24/45 (53%)
Query: 456 NTIGVRHDHFLTYRLDLDVDGDANSFVKSKLRTVRVNDHGSPRKS 500
N + + F + DL + GDA + + LR RV+ +GSP+ S
Sbjct: 124 NALHFMFNQFSKDQKDLILQGDATTGTEGNLRLTRVSSNGSPQGS 168
>pdb|3RA7|L Chain L, Bispecific Digoxigenin Binding Antibodies For Targeted
Payload Delivery
pdb|3RA7|M Chain M, Bispecific Digoxigenin Binding Antibodies For Targeted
Payload Delivery
Length = 214
Score = 28.9 bits (63), Expect = 8.6, Method: Compositional matrix adjust.
Identities = 15/53 (28%), Positives = 26/53 (49%), Gaps = 9/53 (16%)
Query: 608 IENKDIVLWYTLGFHHVPCQEDFPVMPTFNGGFELRPSNFFESNPVLKVVPPS 660
+E +DI ++ CQ+ + PTF GG +L ++ P + + PPS
Sbjct: 78 LEREDIATYF--------CQQSITLPPTFGGGTKLEIKR-ADAAPTVSIFPPS 121
>pdb|1IGI|L Chain L, 26-10 Fab:digoxin Complex-Affinity And Specificity Due To
Surface Complementarity
pdb|1IGJ|A Chain A, 26-10 Fab:digoxin Complex-Affinity And Specificity Due To
Surface Complementarity
pdb|1IGJ|C Chain C, 26-10 Fab:digoxin Complex-Affinity And Specificity Due To
Surface Complementarity
Length = 219
Score = 28.9 bits (63), Expect = 9.9, Method: Compositional matrix adjust.
Identities = 20/84 (23%), Positives = 41/84 (48%), Gaps = 11/84 (13%)
Query: 577 YNISEKWAGGLYADQSRGDDTLSVWSKRNRSIENKDIVLWYTLGFHHVPCQEDFPVMPTF 636
Y +S +++G D+ G + + ++ + +E +D+ +++ HVP PTF
Sbjct: 54 YKVSNRFSG--VPDRFSGSGSGTDFTLKISRVEAEDLGIYFCSQTTHVP--------PTF 103
Query: 637 NGGFELRPSNFFESNPVLKVVPPS 660
GG +L ++ P + + PPS
Sbjct: 104 GGGTKLEIKR-ADAAPTVSIFPPS 126
>pdb|1OSP|L Chain L, Crystal Structure Of Outer Surface Protein A Of Borrelia
Burgdorferi Complexed With A Murine Monoclonal Antibody
Fab
Length = 214
Score = 28.9 bits (63), Expect = 10.0, Method: Compositional matrix adjust.
Identities = 21/81 (25%), Positives = 37/81 (45%), Gaps = 15/81 (18%)
Query: 581 EKWAGGLYADQSRGDD-TLSVWSKRNRSIENKDIVLWYTLGFHHVPCQEDFPVMPTFNGG 639
E W ++ G D TLS+ S++ +D+ ++ CQ+ + PTF GG
Sbjct: 55 ETWVPSRFSGSDSGKDYTLSI-----TSLQTEDVATYF--------CQQYWSPPPTFGGG 101
Query: 640 FELRPSNFFESNPVLKVVPPS 660
+L ++ P + + PPS
Sbjct: 102 TKLEIKR-ADAAPTVSIFPPS 121
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.318 0.136 0.416
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 20,981,249
Number of Sequences: 62578
Number of extensions: 927695
Number of successful extensions: 1935
Number of sequences better than 100.0: 47
Number of HSP's better than 100.0 without gapping: 37
Number of HSP's successfully gapped in prelim test: 10
Number of HSP's that attempted gapping in prelim test: 1697
Number of HSP's gapped (non-prelim): 51
length of query: 660
length of database: 14,973,337
effective HSP length: 105
effective length of query: 555
effective length of database: 8,402,647
effective search space: 4663469085
effective search space used: 4663469085
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 55 (25.8 bits)