Query 006113
Match_columns 660
No_of_seqs 146 out of 710
Neff 5.7
Searched_HMMs 46136
Date Thu Mar 28 18:32:14 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/006113.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/006113hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PRK11504 tynA tyramine oxidase 100.0 1E-192 3E-197 1610.6 72.0 621 20-659 8-634 (647)
2 PLN02566 amine oxidase (copper 100.0 3E-189 6E-194 1583.7 70.9 621 25-655 21-646 (646)
3 PRK14696 tynA tyramine oxidase 100.0 1E-188 3E-193 1590.5 71.5 621 24-660 86-720 (721)
4 COG3733 TynA Cu2+-containing a 100.0 3E-187 7E-192 1488.0 60.0 617 24-659 28-652 (654)
5 KOG1186 Copper amine oxidase [ 100.0 2E-159 3E-164 1310.9 55.4 639 10-659 12-655 (670)
6 PF01179 Cu_amine_oxid: Copper 100.0 3E-143 6E-148 1167.9 36.6 408 239-659 1-411 (413)
7 PF02728 Cu_amine_oxidN3: Copp 99.9 2.5E-24 5.4E-29 193.0 9.8 99 119-217 1-101 (101)
8 PF02727 Cu_amine_oxidN2: Copp 99.8 1.4E-19 3.1E-24 157.9 3.8 85 26-112 1-85 (86)
9 PF04270 Strep_his_triad: Stre 43.4 13 0.00028 30.1 1.2 19 27-45 34-52 (53)
10 PF02728 Cu_amine_oxidN3: Copp 36.8 9.7 0.00021 34.2 -0.5 80 30-112 2-93 (101)
No 1
>PRK11504 tynA tyramine oxidase; Provisional
Probab=100.00 E-value=1.4e-192 Score=1610.61 Aligned_cols=621 Identities=34% Similarity=0.592 Sum_probs=586.1
Q ss_pred CCCCCCCCCCCCCHHHHHHHHHHHHhhCCCCCCceEEEEEEccCCChHhhHhhhhcCCCCCCCCEeEEEEEe--CCeeEE
Q 006113 20 IPSHQYHPLDSLTPSEFTQIQSIVTKAYPKSTYNLTFQYVGLKEPTKQTVLSWLRNETTTNPPRQAFVVARI--DHQTHE 97 (660)
Q Consensus 20 ~~~~~~HPLdpLs~~Ei~~a~~~l~~~~~~~~~~~~f~~I~L~EP~K~~vl~~l~~~~~~~p~R~A~vv~~~--~~~~~E 97 (660)
.+....|||||||++||++|++|||++.+.+ ..++|.+|+|.||+|++|++|+.++ +++|+|+|++++ ++.++|
T Consensus 8 ~~~~~~HPLdpLt~~Ei~~a~~iv~~~~~~~-~~~~F~~i~L~EP~K~~v~~~~~g~---~~~R~a~v~~~~~~~~~~~e 83 (647)
T PRK11504 8 TAAAVSHPLDPLTAAEIEAAVAILRAEGLLG-ESTRFVSIELAEPPKAEVLAFDPGD---PIDRRAFVVLYDRATGKTYE 83 (647)
T ss_pred cCCCCCCCCCCCCHHHHHHHHHHHHhccccC-CceEEEEeeccCCCHHHHHhhhcCC---CCCcEEEEEEEECCCCcEEE
Confidence 3444569999999999999999999987543 5789999999999999999999875 247999999996 577999
Q ss_pred EEEECCCCeEEEEeeeCCCCCCCCCHHHHHHHHHHHhcChHHHHHHHhcCC-CCCceEEccccccccCCC-CCceeEEEE
Q 006113 98 IIVDLSLQGITSKKTYNGYGYPLLTGEEQEDANKLASTYPLFVASISKRGL-KLEEVVCGSFTVGWFGEE-RKNKRIVKM 175 (660)
Q Consensus 98 ~iV~L~~~~v~~~~~~~~~~~p~~~~eE~~~~e~~~~~~p~~~~a~~~~Gi-~~~~v~~d~w~~G~~~~~-~~~rRl~~~ 175 (660)
++|||++++|++++.++ ++||+++.||+.+|+++|++||+|++||+|||| ++++|+||||++||++.+ +.+|||+||
T Consensus 84 ~vVdL~~~~V~~~~~~~-~~~p~~~~~e~~~~e~~~~~dp~~~~ai~~rgl~~~~~V~~dpw~~G~~~~~~~~~~Rl~~~ 162 (647)
T PRK11504 84 AVVSLTAGEVVSWEEIP-GVQPPILLEEFEECEEVVRADPRWQAALAKRGITDFDLVMVDPWSAGYFGEPEERGRRLARG 162 (647)
T ss_pred EEEECCCCEEEEEEECC-CccCCcCHHHHHHHHHHHhcCHHHHHHHHHcCCCCcceEEEcCccccccCCCCcCCceEEEE
Confidence 99999999999999997 479999999999999999999999999999999 578999999999998876 336999999
Q ss_pred EEEEec-CCCCcccccCCCeEEEEeCCCcEEEEEeCCceeeCCCCCCCCCccCcCCCCCCCCCCCceeeCCCCCeeEEec
Q 006113 176 MCYYLD-GTLNADMRPIEGITMTVDLDEMKIIQFRDRIIVPVPKSDGTEYRESKLKPPFRPSLKRTTVVQPDGPSFNIVG 254 (660)
Q Consensus 176 ~~~~r~-~~~n~YahPl~gl~~~vD~~~~~vv~i~d~~~~~~p~~~~~~y~~~~~~~~~r~~lkp~~i~QPeG~sf~v~g 254 (660)
+||+|. +++|+||||||||.++||++++||++|+|.+.+|+|+.. .+|+++.+. ++|+++|||+|+||||+||+|+|
T Consensus 163 ~~~~r~~~~~n~Ya~Pi~G~~~vvDl~~~~vv~i~d~g~~p~p~~~-~~Y~~~~~~-~~r~dlkPl~i~QPeG~sF~v~g 240 (647)
T PRK11504 163 LAFVRADPGDNGYARPIEGLVAVVDLNTMEVLRVEDHGVVPIPAED-GNYDPEFIP-PLRTDLKPLEITQPEGPSFTVDG 240 (647)
T ss_pred EEEEecCCCccccccccCceEEEEECCCCEEEEEecCCCCCCCCCC-CCCChhHcc-ccccCCCCcceeCCCCCcEEEcC
Confidence 999994 888999999999999999999999999999888888776 499988765 68999999999999999999999
Q ss_pred cEEeeeceEEEEeecCCCceeEEeeEEeCCCCCcceEEEEeeeeeeEEeecCCCCcccccceeeecCCCCCCcCCCCCCC
Q 006113 255 SQIRWADWEFHLSFDARAGMIISVASIYDPEKQQSRQVLYKGHVSELFVPYMDLTEEWYYRSFFDVGEYGYGLSSLPLEP 334 (660)
Q Consensus 255 ~~V~W~~W~f~~gf~~reGlvL~~v~~~D~~~~~~r~I~yrlsl~Em~vpYgdp~~~~~~k~~fD~geyG~G~~a~~L~~ 334 (660)
++|+||||+||+|||+|||||||||+|+| .|++|||+||+|||||+||||||+++|++|+|||+||||+|.+||+|++
T Consensus 241 ~~V~W~~W~f~vgf~~reGlvL~dv~y~d--~g~~R~v~YrlslsEm~VPYgdp~p~~~~k~~fD~GeyG~G~~an~L~l 318 (647)
T PRK11504 241 NEVEWQKWSFRVGFNPREGLVLHQVSYDD--GGRERPILYRASLSEMVVPYGDPSPTHYWKNAFDAGEYGLGRLANSLEL 318 (647)
T ss_pred CEEEECCcEEEEecCCCCceEEEEEEEcC--CCCcceEEEEeeeeeeeeecCCCCcchhhceeeeccccCCccccccccc
Confidence 99999999999999999999999999999 6788999999999999999999999999999999999999999999999
Q ss_pred CCCCCCCcEEeeeEEecCCCceeEecceEEEeEeeCCCceeccccCCCCcceEeeeeeceEEEEEEeeeeccccceEEEE
Q 006113 335 LRDCPPNAVFMDAYFAKNDGMPLKMPNVFCIFERYAGDVMWRHTEATDPEKLIREVRPEVSLVVRTVSTVGNYDYINDWE 414 (660)
Q Consensus 335 G~DCpg~~~YlD~~~~~~~g~p~~~~naiCi~E~d~~g~l~kH~~~~~~~~~~~~~r~~~~LVvr~i~TVgNYdY~~~w~ 414 (660)
||||||+|+|||+++.+++|+|++++|||||||+| +|+||||++++++.+++ ||+++||||+|+|||||||+|+|+
T Consensus 319 GcDCpg~i~Y~D~~~~~~~G~p~~~~naICihE~D-~GilwkHt~~r~~~~~v---~r~r~LVvr~I~TVgNYdYi~~w~ 394 (647)
T PRK11504 319 GCDCLGEIRYFDAVLADSDGEPYTIKNAICMHEED-YGILWKHTDFRTGSAEV---RRSRRLVISFFATVGNYDYGFYWY 394 (647)
T ss_pred CCCCCCCCEEcceEEecCCCCeEEecCEEEEeeec-CCeeeeeeccCCCcEEE---EeccEEEEEEEEecccccEEEEEE
Confidence 99999999999999999999999999999999999 78999999999876554 455599999999999999999999
Q ss_pred EeeCccEEEEEeEeeeeeeeeccccCCCCcccccccceeccCcccccceeeEEeeeecCCCCCCCceEEEEEEEeecCCC
Q 006113 415 FKQSGSIKVTVGLTGMLEVRGTNYTHKDQIEEDVYGTLIAENTIGVRHDHFLTYRLDLDVDGDANSFVKSKLRTVRVNDH 494 (660)
Q Consensus 415 F~~DGtIe~ev~aTGil~~~~~~~~~~~~~~~~~yGt~V~~~~~~~~HqH~f~~RlD~dIdG~~Nsv~~~d~v~~~~~~~ 494 (660)
|||||+||+||+|||||+++++. ++.+.+||++|+|+++|++|||+|||||||||||.+|||++.|++++|++ +
T Consensus 395 F~qdG~Ie~eV~aTGil~t~~~~-----~~~~~~yGt~V~~~v~a~~HqH~f~~RlD~dIDG~~Nsv~~~d~~~~p~~-~ 468 (647)
T PRK11504 395 FYQDGTIEFEVKLTGIVFTAAVP-----PGETPPYGTLVAPGLYAPNHQHFFNARLDMDVDGPGNSVYEVNSVPVPMG-P 468 (647)
T ss_pred EecCceEEEEEEeeeEEEeeeeC-----CCccCCCcceecCCcccccceEEEEEEEcccccCCCceEEEEEeEecCCC-C
Confidence 99999999999999999987652 22346899999999999999999999999999999999999999999886 5
Q ss_pred CCCcceeEEEEEEEeechhhHhhhcCC-CCcEEEEecCCCCCCCCCceeEEEeeCCCcCcCCCCCChhhhcccccccceE
Q 006113 495 GSPRKSYWTVDRETARTESAARIKLGS-EPVDLLFVNPNKKTKMGNLIGYRLVPYGVVGPLLSDDDYPQIRAAFTNYNAW 573 (660)
Q Consensus 495 ~np~~~~~~~~~~~l~tE~~a~~~~~~-~~r~~~ivN~~~~N~~G~p~gY~l~p~~~~~~~~~~~s~~~~ra~fa~~~lw 573 (660)
+||++|+|++++++++||++|++++++ ++|+|+|+|++++|++|+|+||||+|+++++++++++|+..+||+||+||||
T Consensus 469 ~np~g~~~~~~~t~l~tE~~a~~~~~~~~~R~~~ivN~~~~N~~G~pvgYkl~p~~~~~~l~~~~s~~~~ra~fa~~~lw 548 (647)
T PRK11504 469 DNPHGNAFYTRETLLETESEAARDADPSTGRYWKIVNPNKKNRLGEPVAYKLVPGGNPPLLADPGSSIRQRAGFATHHLW 548 (647)
T ss_pred CCccceEEEEEEEEecchhhhhhccCCCCccEEEEECCCCcCCCCCeeeEEEccCCCccccCCCCchhhhcchhhhCcEE
Confidence 899999999999999999999999999 9999999999999999999999999999999999999999999999999999
Q ss_pred EeeecCCccCCCCcCCCCCCCCCChhhhccCCCceecCCeEEEEEecceeCCCCCCCCCcccccceeEEEeCCCCCCCCC
Q 006113 574 VTAYNISEKWAGGLYADQSRGDDTLSVWSKRNRSIENKDIVLWYTLGFHHVPCQEDFPVMPTFNGGFELRPSNFFESNPV 653 (660)
Q Consensus 574 VT~y~~~E~~asg~y~~q~~~~~~l~~~~~~~e~i~~~DlV~W~t~G~~HvPr~ED~Pvmp~~~~~f~L~P~nFFd~nP~ 653 (660)
||+|+|+|+||||+|+||+.+++||++|+++||+|+|||||+|||||+||+||+|||||||++++||+|||+|||++||+
T Consensus 549 VT~y~d~E~~aag~y~~Qs~~~~gl~~~~~~~~~i~~~DiVlW~t~G~~HvPr~ED~PvMP~~~~gf~L~P~nFF~~NPa 628 (647)
T PRK11504 549 VTPYDPDERYAAGDYPNQSAGGDGLPAYIAADRSIENTDVVLWYTFGITHVPRPEDWPVMPVDYAGFKLKPVGFFDRNPA 628 (647)
T ss_pred EeccCCCccccCCCCcccCCCCCCHHHHhcCCCccccCceEEEEecCcccCCChhhCCCCccceEEEEEEcCCCCCCCcc
Confidence 99999999999999999999989999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCCC
Q 006113 654 LKVVPP 659 (660)
Q Consensus 654 ldvP~~ 659 (660)
||||++
T Consensus 629 ldvp~s 634 (647)
T PRK11504 629 LDLPPE 634 (647)
T ss_pred ccCCCc
Confidence 999986
No 2
>PLN02566 amine oxidase (copper-containing)
Probab=100.00 E-value=2.6e-189 Score=1583.75 Aligned_cols=621 Identities=60% Similarity=1.049 Sum_probs=578.1
Q ss_pred CCCCCCCCHHHHHHHHHHHHhhCCCCCCceEEEEEEccCCChHhhHhhhhcCC--CCCCCCEeEEEEEeCCeeEEEEEEC
Q 006113 25 YHPLDSLTPSEFTQIQSIVTKAYPKSTYNLTFQYVGLKEPTKQTVLSWLRNET--TTNPPRQAFVVARIDHQTHEIIVDL 102 (660)
Q Consensus 25 ~HPLdpLs~~Ei~~a~~~l~~~~~~~~~~~~f~~I~L~EP~K~~vl~~l~~~~--~~~p~R~A~vv~~~~~~~~E~iV~L 102 (660)
.|||||||++||++|++|||++.+.....++|.+|+|.||+|++|++|+.++. .+.|+|+|+|++..+++++|++|||
T Consensus 21 ~HPLdpLs~~Ei~~a~~iv~~~~~~~~~~~~F~~i~L~EP~K~~v~~~~~~~~~~~~~p~R~a~v~~~~~~~~~e~vVdl 100 (646)
T PLN02566 21 YHPLDPLNPQEINKIRLIVQKSHLGNLPNLTFHFLDLEEPEKRDVLKWLSSNPSNKSPPPRRAKVVVRAGGETYELIVDL 100 (646)
T ss_pred CCCCCCCCHHHHHHHHHHHHhhccCCCCceEEEEEEccCCChHHHHhhhhcccCCCCCCCcEEEEEEecCCCEEEEEEEC
Confidence 59999999999999999999987432236899999999999999999998752 2346899997775578899999999
Q ss_pred CCCeEEEEeeeCCCCCCCCCHHHHHHHHHHHhcChHHHHHHHhcCCCCCceEEccccccccCCCCCceeEEEEEEEEecC
Q 006113 103 SLQGITSKKTYNGYGYPLLTGEEQEDANKLASTYPLFVASISKRGLKLEEVVCGSFTVGWFGEERKNKRIVKMMCYYLDG 182 (660)
Q Consensus 103 ~~~~v~~~~~~~~~~~p~~~~eE~~~~e~~~~~~p~~~~a~~~~Gi~~~~v~~d~w~~G~~~~~~~~rRl~~~~~~~r~~ 182 (660)
+.++|++++.+++.|||+++.||+.+||++|++||+|+|||++|||+.+.|+||||++||+|.. ++||++||+||+|.+
T Consensus 101 ~~~~v~~~~~~~g~G~p~~~~~e~~~~e~~~~~dp~~~~a~~~rgl~~~~V~~dpw~~G~~~~~-~~~R~~q~~~y~r~~ 179 (646)
T PLN02566 101 ATGSITSSRVYTGHGYPPLTFIELFQASKLPLKYPKFKKSILRRGLNISEVSCIPFTVGWYGET-VTKRALKISCFYRGG 179 (646)
T ss_pred CCCEEEEEEEcCCCCcCCcCHHHHHHHHHHHhcCHHHHHHHHHcCCCcceEEEeCcccccCCCC-CCcEEEEEEEEEcCC
Confidence 9999999999988779999999999999999999999999999999888899999999998874 579999999999998
Q ss_pred CCCcccccCCCeEEEEeCCCcEEEEEeCCceeeCCCCCCCCCccCcCCCCCCCCCCCceeeCCC-CCeeEEeccEEeeec
Q 006113 183 TLNADMRPIEGITMTVDLDEMKIIQFRDRIIVPVPKSDGTEYRESKLKPPFRPSLKRTTVVQPD-GPSFNIVGSQIRWAD 261 (660)
Q Consensus 183 ~~n~YahPl~gl~~~vD~~~~~vv~i~d~~~~~~p~~~~~~y~~~~~~~~~r~~lkp~~i~QPe-G~sf~v~g~~V~W~~ 261 (660)
++|+||||||||.++||++++||++|+|.+..++|+..+. +.|+++||+.|+||| |+||+|+|++|+|||
T Consensus 180 ~~N~Ya~Pl~G~~~vvDl~~~~vi~i~d~~~~p~p~~~~~---------~~R~d~kPl~i~QPegG~sF~v~G~~V~W~~ 250 (646)
T PLN02566 180 SVNVFARPIEGISILIDVDSMQIIKYSDRFRAPLPKAEGT---------DFRTKHKPFSFPCNVSDSGFTILGHRVKWAN 250 (646)
T ss_pred CcccccCccCCcEEEEECCCCEEEEEECCCCCccCCCCCC---------CCCcCCCCccccCCCCCCcEEEcCCEEEecC
Confidence 9999999999999999999999999999865666665431 369999999999999 599999999999999
Q ss_pred eEEEEeecCCCceeEEeeEEeCCCCCcceEEEEeeeeeeEEeecCCCCcccccceeeecCCCCCCcCCCCCCCCCCCCCC
Q 006113 262 WEFHLSFDARAGMIISVASIYDPEKQQSRQVLYKGHVSELFVPYMDLTEEWYYRSFFDVGEYGYGLSSLPLEPLRDCPPN 341 (660)
Q Consensus 262 W~f~~gf~~reGlvL~~v~~~D~~~~~~r~I~yrlsl~Em~vpYgdp~~~~~~k~~fD~geyG~G~~a~~L~~G~DCpg~ 341 (660)
|+||||||+|||||||||+|+|+++++.|||+||+|||||+||||||+++|++|+|||+||||+|.+||+|++||||||+
T Consensus 251 W~f~vgf~~reGlvL~~v~~~D~~~~~~R~v~YrlSlsEm~VPYgDP~~~~~~k~~fD~GeyG~G~~a~~L~lGcDCpg~ 330 (646)
T PLN02566 251 WDFHVGFDARAGVTISTASVFDAKVKRFRRVLYRGHVSETFVPYMDPTSEWYFRTFMDIGEFGFGRSAVTLQPLIDCPAN 330 (646)
T ss_pred cEEEEecCCCcceEEEeEEEeccCCCcceeEEEEeeeeeeEEecCCCCccccccceeeccccCccccccccccCCCCCCC
Confidence 99999999999999999999999988889999999999999999999999999999999999999999999999999999
Q ss_pred cEEeeeEEecCCCceeEecceEEEeEeeCCCceeccccCCCCcceEeeeeeceEEEEEEeeeeccccceEEEEEeeCccE
Q 006113 342 AVFMDAYFAKNDGMPLKMPNVFCIFERYAGDVMWRHTEATDPEKLIREVRPEVSLVVRTVSTVGNYDYINDWEFKQSGSI 421 (660)
Q Consensus 342 ~~YlD~~~~~~~g~p~~~~naiCi~E~d~~g~l~kH~~~~~~~~~~~~~r~~~~LVvr~i~TVgNYdY~~~w~F~~DGtI 421 (660)
|+|||+++.+++|+|++++|||||||+|+|||||||++++..+..++.++.+.+||||+|+|||||||+|+|+|||||+|
T Consensus 331 i~YlD~~~~~~~G~p~~~~NaICihE~D~GgilwkHt~~~~~~~~~r~g~~~~~LVvr~I~TVgNYDYif~w~F~qdGtI 410 (646)
T PLN02566 331 AVYLDGYVAGADGQAQKMTNVICIFERYSGDVAFRHTEINVPGRVIRSGEPEISLVVRMVATLGNYDYILDWEFKKSGSI 410 (646)
T ss_pred cEEeeeEEecCCCCEEEecCEEEEEeecCCccceeeccCCCCccccccCcceEEEEEEEEEEeecccEEEEEEEecCceE
Confidence 99999999999999999999999999997789999999986655556677788999999999999999999999999999
Q ss_pred EEEEeEeeeeeeeeccccCCCCcccccccceeccCcccccceeeEEeeeecCCCCCCCceEEEEEEEeecCC--CCCCcc
Q 006113 422 KVTVGLTGMLEVRGTNYTHKDQIEEDVYGTLIAENTIGVRHDHFLTYRLDLDVDGDANSFVKSKLRTVRVND--HGSPRK 499 (660)
Q Consensus 422 e~ev~aTGil~~~~~~~~~~~~~~~~~yGt~V~~~~~~~~HqH~f~~RlD~dIdG~~Nsv~~~d~v~~~~~~--~~np~~ 499 (660)
|+||||||||+|+++.|....+.+..+|||+|+|+++|++|||+|||||||||||.+|||++.|+++++... ++||++
T Consensus 411 e~eV~aTGil~t~~~~~~~~~~~~~~~yGt~V~~~v~a~~HqH~f~~RlD~dIdG~~Nsv~~~~~~~~~~~~~~~~np~g 490 (646)
T PLN02566 411 KVGVDLTGVLEMKATSYTNNDQITKDVYGTLVAENTIAVNHDHFLTYYLDLDVDGNGNSFVKAKLQTARVTAVNASSPRK 490 (646)
T ss_pred EEEEEeEEEEEecccccccccccccCCCccEecCCcccccceEEEEEEEcccccCCCCeEEEEeeEEccCCCCCCCCCCc
Confidence 999999999999887653322222358999999999999999999999999999999999999999976643 589999
Q ss_pred eeEEEEEEEeechhhHhhhcCCCCcEEEEecCCCCCCCCCceeEEEeeCCCcCcCCCCCChhhhcccccccceEEeeecC
Q 006113 500 SYWTVDRETARTESAARIKLGSEPVDLLFVNPNKKTKMGNLIGYRLVPYGVVGPLLSDDDYPQIRAAFTNYNAWVTAYNI 579 (660)
Q Consensus 500 ~~~~~~~~~l~tE~~a~~~~~~~~r~~~ivN~~~~N~~G~p~gY~l~p~~~~~~~~~~~s~~~~ra~fa~~~lwVT~y~~ 579 (660)
++|++++++++||++|++++++..|.|+|+|++++|++|+|+||||+|+++++++++++|+..+||+||+|+||||+|+|
T Consensus 491 ~~~~~~~~~~~tE~~a~~~~~~~~~~~~i~N~~~~N~~G~pvgYkL~p~~~~~~l~~~~s~~~~Ra~fa~~~lwVT~y~d 570 (646)
T PLN02566 491 SYWTVVKETAKTEAEGRIRLGSEPAELLIVNPNKKTKLGNQVGYRLITGQPVTSLLSDDDYPQIRAAYTKYQVWVTAYNK 570 (646)
T ss_pred ceEEEEEEEecchhhhhhccCCCCceEEEECCCCcCCCCCeeeEEEccCCCccccCCCccchhhcchhhhCcEEEecCCC
Confidence 99999999999999999999995577999999999999999999999999999999999999999999999999999999
Q ss_pred CccCCCCcCCCCCCCCCChhhhccCCCceecCCeEEEEEecceeCCCCCCCCCcccccceeEEEeCCCCCCCCCCC
Q 006113 580 SEKWAGGLYADQSRGDDTLSVWSKRNRSIENKDIVLWYTLGFHHVPCQEDFPVMPTFNGGFELRPSNFFESNPVLK 655 (660)
Q Consensus 580 ~E~~asg~y~~q~~~~~~l~~~~~~~e~i~~~DlV~W~t~G~~HvPr~ED~Pvmp~~~~~f~L~P~nFFd~nP~ld 655 (660)
+|+||||.|++|+++++||+.|+++||+|+|||||+|||||+||+||+|||||||++++||+|||+||||+||+|.
T Consensus 571 ~E~~aag~y~~qs~g~~gl~~w~~~~~~I~~~DiVlW~t~G~~HvPr~ED~PvMP~~~~gf~L~P~nFF~~NPaL~ 646 (646)
T PLN02566 571 SERWAGGFYADRSRGDDGLAVWSSRNREIENKDIVLWYTVGFHHIPYQEDFPVMPTLHGGFELRPANFFESNPLLR 646 (646)
T ss_pred cccCCCCcCccCCCCCCChhhhhcCCCcccCCceEEEEecccccCCChhhCCCcccccceEEEEcCCCCCCCCCCC
Confidence 9999999999999999999999999999999999999999999999999999999999999999999999999983
No 3
>PRK14696 tynA tyramine oxidase; Provisional
Probab=100.00 E-value=1.4e-188 Score=1590.50 Aligned_cols=621 Identities=33% Similarity=0.619 Sum_probs=574.7
Q ss_pred CCCCCCCCCHHHHHHHHHHHHhhCCCCCCceEEEEEEccCCChHhhHhhhhcCCCCCCCCEeEEEEEeCCeeEEEEEECC
Q 006113 24 QYHPLDSLTPSEFTQIQSIVTKAYPKSTYNLTFQYVGLKEPTKQTVLSWLRNETTTNPPRQAFVVARIDHQTHEIIVDLS 103 (660)
Q Consensus 24 ~~HPLdpLs~~Ei~~a~~~l~~~~~~~~~~~~f~~I~L~EP~K~~vl~~l~~~~~~~p~R~A~vv~~~~~~~~E~iV~L~ 103 (660)
+.|||||||++||++|++||+++.... .+++|.+|+|+||+|++|++|+.++.+..|+|+|+|+++.+++++|++|||+
T Consensus 86 ~~HPLdpLt~~Ei~~a~~iv~~~~~~~-~~~~F~~i~L~EP~K~~v~~~~~~~~~~~~~R~A~v~~~~~~~~~e~vVdL~ 164 (721)
T PRK14696 86 RPHPLNALTADEIKQAVEIVKASADFK-PNTRFTEISLKEPDKEAVWAFALENKPVDQPRKADVIMLDGKHVIEAVVDLQ 164 (721)
T ss_pred CCCCCCCCCHHHHHHHHHHHHhccccC-CceEEEEEEecCCCcHHHHHHHhcCCCCCCCcEEEEEEEeCCCEEEEEEECC
Confidence 359999999999999999999987422 4689999999999999999999853122378999999998888999999999
Q ss_pred CCeEEEEeeeCCCCCCCCCHHHHHHHHHHHhcChHHHHHHHhcCC-CCCceEEccccccccCCCC---CceeEEEEEEEE
Q 006113 104 LQGITSKKTYNGYGYPLLTGEEQEDANKLASTYPLFVASISKRGL-KLEEVVCGSFTVGWFGEER---KNKRIVKMMCYY 179 (660)
Q Consensus 104 ~~~v~~~~~~~~~~~p~~~~eE~~~~e~~~~~~p~~~~a~~~~Gi-~~~~v~~d~w~~G~~~~~~---~~rRl~~~~~~~ 179 (660)
+++|++|+.+++ +||+++.|||.+|+++|++||+|+++|++||| +++.|+||||++||++.++ ++|||+||+||+
T Consensus 165 ~~~v~~~~~~~~-~~p~~~~~e~~~~e~~~~~dp~~~~ai~~rgl~~~~~V~~dpw~~G~~~~~~~~~~~~Rl~~~~~y~ 243 (721)
T PRK14696 165 NNKVLSWQPIKD-AHGMVLLDDFASVQNIINNSEEFAAALKKRGITDVKKVITTPLTVGYFDGKDGLKQDARLLKVVSYL 243 (721)
T ss_pred CCEEEEEEeCCC-ccCCCCHHHHHHHHHHHhhCHHHHHHHHHcCCCCCCEEEEeCccccccCCcCccccCceEEEEEEEE
Confidence 999999999974 69999999999999999999999999999999 7899999999999988754 379999999999
Q ss_pred ecCCCCcccccCCCeEEEEeCCCcEEEEEeCCceeeCCCCCCCCCccCcCCCCCCCCCCCceeeCCCCCeeEEeccEEee
Q 006113 180 LDGTLNADMRPIEGITMTVDLDEMKIIQFRDRIIVPVPKSDGTEYRESKLKPPFRPSLKRTTVVQPDGPSFNIVGSQIRW 259 (660)
Q Consensus 180 r~~~~n~YahPl~gl~~~vD~~~~~vv~i~d~~~~~~p~~~~~~y~~~~~~~~~r~~lkp~~i~QPeG~sf~v~g~~V~W 259 (660)
+.+++|+||||||||+++||++++||++|+|++..+.|...+ +|+++. +.|+++||++|+||||+||+|+|++|+|
T Consensus 244 ~~~~~N~Ya~Pi~G~~~vvDl~~~kVi~i~d~g~~~~p~~~~-~Y~~~~---~~r~~lKPl~i~QPeG~sF~v~G~~V~W 319 (721)
T PRK14696 244 DVGDGNYWAHPIENLVAVVDLEQKKIIKIEEGPVVPVPMTAR-PYDGRD---RVAPAVKPLQIIEPEGKNYTITGDTIHW 319 (721)
T ss_pred cCCCccccccccCceEEEEECCCCEEEEEecCCCCCCCCCCc-CCCccc---cccCCCCCceeeCCCCCCEEEcCCeEEE
Confidence 988999999999999999999999999999988766665544 998776 3799999999999999999999999999
Q ss_pred eceEEEEeecCCCceeEEeeEEeCCCCCcceEEEEeeeeeeEEeecCCCCcccccceeeecCCCCCCcCCCCCCCCCCCC
Q 006113 260 ADWEFHLSFDARAGMIISVASIYDPEKQQSRQVLYKGHVSELFVPYMDLTEEWYYRSFFDVGEYGYGLSSLPLEPLRDCP 339 (660)
Q Consensus 260 ~~W~f~~gf~~reGlvL~~v~~~D~~~~~~r~I~yrlsl~Em~vpYgdp~~~~~~k~~fD~geyG~G~~a~~L~~G~DCp 339 (660)
|||+||+|||+|||||||||+|+| .|+.|||+||+|||||+||||||+++|++|+|||+||||+|.+||+|++|||||
T Consensus 320 ~~W~f~vgf~~ReGlvL~dv~y~d--~g~~R~v~YrlSlsEm~VPYgdp~p~~~~k~~fD~GeyG~G~~an~L~lGcDCp 397 (721)
T PRK14696 320 RNWDFHLSLDSRVGPMLSTVTYND--NGTKRKVMYEGSLGGMIVPYGDPDIGWYFKAYLDSGDYGMGTLTSPIARGKDAP 397 (721)
T ss_pred CCcEEEEecCCCcceEEEEEEEcC--CCcceeEEEEeeeeeEEEeCCCCCchhhhceeeeccccCCcccccccccCCCCC
Confidence 999999999999999999999999 578899999999999999999999999999999999999999999999999999
Q ss_pred CCcEEeeeEEecCCCceeEecceEEEeEeeCCCceeccccCCCCcceEeeeeeceEEEEEEeeeeccccceEEEEEeeCc
Q 006113 340 PNAVFMDAYFAKNDGMPLKMPNVFCIFERYAGDVMWRHTEATDPEKLIREVRPEVSLVVRTVSTVGNYDYINDWEFKQSG 419 (660)
Q Consensus 340 g~~~YlD~~~~~~~g~p~~~~naiCi~E~d~~g~l~kH~~~~~~~~~~~~~r~~~~LVvr~i~TVgNYdY~~~w~F~~DG 419 (660)
|+|+|||+++.+++|+|++++|||||||+| .|++|||++++.+ ++++ |+++||||+|+|||||||+|+|+|||||
T Consensus 398 g~i~Y~D~~~~~~~G~p~~~~NaICihE~D-~G~~wkHt~~~~~-~~~~---r~r~LVvr~i~TVgNYDYif~w~F~qdG 472 (721)
T PRK14696 398 SNAVLLDETIADYTGVPMEIPRAIAVFERY-AGPEYKHQEMGQP-NVST---ERRELVVRWISTVGNYDYIFDWVFHENG 472 (721)
T ss_pred CCCEEeeeEEEcCCCCeEEecCEEEEeeec-CCCceeccccCCC-cceE---eeeEEEEEEEEEecceeEEEEEEEecCc
Confidence 999999999999999999999999999999 6799999999854 4444 4559999999999999999999999999
Q ss_pred cEEEEEeEeeeeeeeeccccCC-CC--cccccccceeccCcccccceeeEEeeeecCCCCCCCceEEEEEEEeecCCCCC
Q 006113 420 SIKVTVGLTGMLEVRGTNYTHK-DQ--IEEDVYGTLIAENTIGVRHDHFLTYRLDLDVDGDANSFVKSKLRTVRVNDHGS 496 (660)
Q Consensus 420 tIe~ev~aTGil~~~~~~~~~~-~~--~~~~~yGt~V~~~~~~~~HqH~f~~RlD~dIdG~~Nsv~~~d~v~~~~~~~~n 496 (660)
+||+||||||||+|+++.+... +. +.+.+|||+|+|+++|++|||+|||||||||||.+|||+++|++++|++ ++|
T Consensus 473 tIe~eV~aTGil~t~~i~~~~~~~~~~~~~~~yGt~V~~~v~a~~HqH~f~~RlD~dIDG~~Nsv~~~d~~~~p~~-~~n 551 (721)
T PRK14696 473 TIGIDAGATGIEAVKGVKAKTMHDETAKEDTRYGTLIDHNIVGTTHQHIYNFRLDLDVDGENNSLVAMDPVVKPNT-AGG 551 (721)
T ss_pred eEEEEEEEEEEEEeccccccccccccccccCCCccEecCCcccccceEEEEEEEcccccCCcceEEEEeeeEccCC-CCC
Confidence 9999999999999987643111 11 1245899999999999999999999999999999999999999999886 489
Q ss_pred CcceeEEEEEEEeechhhHhhhcCC-CCcEEEEecCCCCCCCCCceeEEEeeCC--Cc----CcCCCCCChhhhcccccc
Q 006113 497 PRKSYWTVDRETARTESAARIKLGS-EPVDLLFVNPNKKTKMGNLIGYRLVPYG--VV----GPLLSDDDYPQIRAAFTN 569 (660)
Q Consensus 497 p~~~~~~~~~~~l~tE~~a~~~~~~-~~r~~~ivN~~~~N~~G~p~gY~l~p~~--~~----~~~~~~~s~~~~ra~fa~ 569 (660)
|++++|++++++++||++|++++++ +.|. |+|++++|++|+|+||||+|++ +. .+++.++|+..+||+||+
T Consensus 552 P~g~~~~~~~t~l~tE~~a~~~~~~~~~R~--ivN~~~~N~~G~pvgYkL~p~~~~~~~~~~~~~~~p~s~~~~Ra~fa~ 629 (721)
T PRK14696 552 PRTSTMQVNQYNIGNEQDAAQKFDPGTIRL--LSNPNKENRMGNPVSYQIIPYAGGTHPVAKGANFAPDEWIYHRLSFMD 629 (721)
T ss_pred ccceEEEEEEEEccchhhhhhccCCccceE--EeCCCccCCCCCeeeEEEecCCCCccccccccccCCcchhhhhhhhhh
Confidence 9999999999999999999999999 8886 9999999999999999999974 43 236889999999999999
Q ss_pred cceEEeeecCCccCCCCcCCCCCCCCCChhhhccCCCceecCCeEEEEEecceeCCCCCCCCCcccccceeEEEeCCCCC
Q 006113 570 YNAWVTAYNISEKWAGGLYADQSRGDDTLSVWSKRNRSIENKDIVLWYTLGFHHVPCQEDFPVMPTFNGGFELRPSNFFE 649 (660)
Q Consensus 570 ~~lwVT~y~~~E~~asg~y~~q~~~~~~l~~~~~~~e~i~~~DlV~W~t~G~~HvPr~ED~Pvmp~~~~~f~L~P~nFFd 649 (660)
||||||+|+|+|+||+|+|++|+.+++||++|+++||+|+|||||+|||||+||+||+|||||||++++||+|||+||||
T Consensus 630 ~~lwVT~y~d~E~~aaG~y~~qs~g~~gl~~w~~~~e~i~n~DiV~W~t~G~~HvPr~ED~PvMP~~~~~f~LkP~nFFd 709 (721)
T PRK14696 630 KQLWVTRYHPGERFPEGKYPNRSTHDTGLGQYSKDNESLDNTDAVVWMTTGTTHVARAEEWPIMPTEWVHTLLKPWNFFD 709 (721)
T ss_pred CcEEEeccCCcccCCCCCCccCCCCCCCHHHHhhCCCcccCCceEEEEecCcccCCchhhCCCccceeeeEEEEcCCCCC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCCCCCCCC
Q 006113 650 SNPVLKVVPPS 660 (660)
Q Consensus 650 ~nP~ldvP~~~ 660 (660)
+||+||||++.
T Consensus 710 ~nPaldvp~~~ 720 (721)
T PRK14696 710 ETPTLGLLKKD 720 (721)
T ss_pred CCcccCCCCCC
Confidence 99999999874
No 4
>COG3733 TynA Cu2+-containing amine oxidase [Secondary metabolites biosynthesis, transport, and catabolism]
Probab=100.00 E-value=3.1e-187 Score=1488.03 Aligned_cols=617 Identities=34% Similarity=0.619 Sum_probs=582.7
Q ss_pred CCCCCCCCCHHHHHHHHHHHHhhCCCCCCceEEEEEEccCCChHhhHhhhhcCCCCCCCCEeEEEEEe--CCeeEEEEEE
Q 006113 24 QYHPLDSLTPSEFTQIQSIVTKAYPKSTYNLTFQYVGLKEPTKQTVLSWLRNETTTNPPRQAFVVARI--DHQTHEIIVD 101 (660)
Q Consensus 24 ~~HPLdpLs~~Ei~~a~~~l~~~~~~~~~~~~f~~I~L~EP~K~~vl~~l~~~~~~~p~R~A~vv~~~--~~~~~E~iV~ 101 (660)
.+|||||||++||++|++|||++.... ++++|..|+|.||+|++|++|...+ .++.|.|+++++. ++..+|++||
T Consensus 28 ~shPLdpLt~~Eik~aVEivr~e~~~~-~~~~F~~VtL~eP~K~~v~~f~~~~--~~ieR~a~~~~~~~~~~~i~EavV~ 104 (654)
T COG3733 28 RSHPLDPLTADEIKQAVEIVRAEADFK-KNFAFTEVTLLEPDKQEVLAFRLEN--KPIERKALAVVYELDGKGIYEAVVD 104 (654)
T ss_pred cCCCCCccCHHHHHHHHHHHHhhcccC-CceeeEEEEecCCchHHHHHHHhcC--CCcchhhhhheeeccCCceEEEEEE
Confidence 469999999999999999999988654 6889999999999999999998743 3688999999987 6889999999
Q ss_pred CCCCeEEEEeeeCCCCCCCCCHHHHHHHHHHHhcChHHHHHHHhcCC-CCCceEEccccccccCCC-CCceeEEEEEEEE
Q 006113 102 LSLQGITSKKTYNGYGYPLLTGEEQEDANKLASTYPLFVASISKRGL-KLEEVVCGSFTVGWFGEE-RKNKRIVKMMCYY 179 (660)
Q Consensus 102 L~~~~v~~~~~~~~~~~p~~~~eE~~~~e~~~~~~p~~~~a~~~~Gi-~~~~v~~d~w~~G~~~~~-~~~rRl~~~~~~~ 179 (660)
|++.+|.+|+.+++ .+|+|+.|||..||+++++||+|+|||+|||| |+++|+||||++|+|+.+ ..+||+++.+||+
T Consensus 105 L~~nkv~~~q~i~~-a~p~i~ldef~~~e~iVr~d~~~~eA~~krGi~D~~~V~vdpwt~G~~~~~~~~grr~~~~~m~y 183 (654)
T COG3733 105 LDNNKVLSWQPIKD-AHPMITLDEFASVENIVRNDPRFIEACKKRGITDMDQVIVDPWTAGYFDEEGLKGRRRALKVMWY 183 (654)
T ss_pred cccceeeeeEeccc-cCCceeHHHHHHHHHHHhcCHHHHHHHHhcCCchhhceEeccccccccCccccccceeEEEEEEE
Confidence 99999999999986 69999999999999999999999999999999 899999999999999754 4589999999999
Q ss_pred ec-CCCCcccccCCCeEEEEeCCCcEEEEEeCCceeeCCCCCCCCCccCcCCCCCCCCCCCceeeCCCCCeeEEeccEEe
Q 006113 180 LD-GTLNADMRPIEGITMTVDLDEMKIIQFRDRIIVPVPKSDGTEYRESKLKPPFRPSLKRTTVVQPDGPSFNIVGSQIR 258 (660)
Q Consensus 180 r~-~~~n~YahPl~gl~~~vD~~~~~vv~i~d~~~~~~p~~~~~~y~~~~~~~~~r~~lkp~~i~QPeG~sf~v~g~~V~ 258 (660)
|. .++|+|+|||+||.++||++++||++|+|++++|+|++. .+|..+.++ +.+.++||+.|.||||+||+|+|++|+
T Consensus 184 r~~e~~N~y~hPi~gl~aiVDl~~~kVv~idd~~vvPlp~~~-~ny~~e~i~-~~~~~~KpiqI~QPeg~sf~i~G~~i~ 261 (654)
T COG3733 184 RDVEDDNYYAHPIEGLVAIVDLEKKKVVRIDDHPVVPLPMKR-ANYGRERIG-KALGPVKPIQIIQPEGKSFTITGDEIS 261 (654)
T ss_pred EecCCCCcccccccceeeEEEcccCeEEEecCCCcccccccc-cCcCHHHhh-hhcCCCCCceeecCCCceEEEecCEEE
Confidence 95 889999999999999999999999999999999999854 578766654 345569999999999999999999999
Q ss_pred eeceEEEEeecCCCceeEEeeEEeCCCCCcceEEEEeeeeeeEEeecCCCCcccccceeeecCCCCCCcCCCCCCCCCCC
Q 006113 259 WADWEFHLSFDARAGMIISVASIYDPEKQQSRQVLYKGHVSELFVPYMDLTEEWYYRSFFDVGEYGYGLSSLPLEPLRDC 338 (660)
Q Consensus 259 W~~W~f~~gf~~reGlvL~~v~~~D~~~~~~r~I~yrlsl~Em~vpYgdp~~~~~~k~~fD~geyG~G~~a~~L~~G~DC 338 (660)
||+|+||+|||+|||||||||+|.| +|..|+|+||+||+||+||||||+++|++|++||+||||+|.++++|++| ||
T Consensus 262 W~~w~frig~n~ReGlvl~dVsY~D--~g~~Rpv~YraSl~eMvVPYGdPd~~h~~K~~fD~GeYglG~l~~plalG-dc 338 (654)
T COG3733 262 WQNWRFRIGMNPREGLVLSDVSYND--NGNKRPVLYRASLVEMVVPYGDPDPGHYFKNAFDSGEYGLGTLTSPLALG-DC 338 (654)
T ss_pred EeeeeEEEeccccCCeEEEEEEEcC--CCccceEEEEeeecceeeecCCCCcchhhhhcccccccCccccccchhhc-cc
Confidence 9999999999999999999999999 78899999999999999999999999999999999999999999999999 99
Q ss_pred CC-CcEEeeeEEecCCCceeEecceEEEeEeeCCCceeccccCCCCcceEeeeeeceEEEEEEeeeeccccceEEEEEee
Q 006113 339 PP-NAVFMDAYFAKNDGMPLKMPNVFCIFERYAGDVMWRHTEATDPEKLIREVRPEVSLVVRTVSTVGNYDYINDWEFKQ 417 (660)
Q Consensus 339 pg-~~~YlD~~~~~~~g~p~~~~naiCi~E~d~~g~l~kH~~~~~~~~~~~~~r~~~~LVvr~i~TVgNYdY~~~w~F~~ 417 (660)
.| .|+|||+++++.+|+|++++||||||||| .|+||||+|+|++..+++|.| .||||.|+|||||||+|+|+|||
T Consensus 339 ~g~~i~~lDa~~a~~tG~p~~i~~AIcIhEed-~GvlwKH~d~rs~~~~trr~r---~LVVs~i~Tv~NYdYg~~Wifhq 414 (654)
T COG3733 339 AGSNIVLLDATFANYTGEPMTIPNAICIHEED-AGVLWKHQDFRSPNVETRRAR---GLVVSWIATVANYDYGFYWIFHQ 414 (654)
T ss_pred ccceeEEEeeeeeccCCceEEecceeEEEecc-ccceeeehhhcCCccceeecc---ceEEEEEEeecccceeEEEEEEc
Confidence 99 89999999999999999999999999999 889999999999887776666 89999999999999999999999
Q ss_pred CccEEEEEeEeeeeeeeeccccCCCCcc-cccccceeccCcccccceeeEEeeeecCCCCCCCceEEEEEEEeecCCCCC
Q 006113 418 SGSIKVTVGLTGMLEVRGTNYTHKDQIE-EDVYGTLIAENTIGVRHDHFLTYRLDLDVDGDANSFVKSKLRTVRVNDHGS 496 (660)
Q Consensus 418 DGtIe~ev~aTGil~~~~~~~~~~~~~~-~~~yGt~V~~~~~~~~HqH~f~~RlD~dIdG~~Nsv~~~d~v~~~~~~~~n 496 (660)
||+||+|++||||++|++.. ++. ...|||+|.|++.|++||||||+||||||||.+|||+++|++..|.+ ..|
T Consensus 415 DGtIe~e~klTGIin~~a~~-----e~~p~~~yGt~v~~~v~g~~HQH~Fn~RLdm~VDG~~Nsv~e~nv~~~P~~-~~n 488 (654)
T COG3733 415 DGTIEFEAKLTGIINTKAIA-----EGQPDPTYGTLVDPNVVGHTHQHFFNARLDMDVDGERNSVVEMNVVGAPIT-KGN 488 (654)
T ss_pred CceEEEeecceeEEEeehhc-----CCCCCCCccceeccccccccceeEEEeeecccccCcccceEEEEcccCCCC-CCC
Confidence 99999999999999998653 222 23599999999999999999999999999999999999998877774 489
Q ss_pred CcceeEEEEEEEeechhhHhhhcCC-CCcEEEEecCCCCCCCCCceeEEEeeCCCcCcCCCCCChhhhcccccccceEEe
Q 006113 497 PRKSYWTVDRETARTESAARIKLGS-EPVDLLFVNPNKKTKMGNLIGYRLVPYGVVGPLLSDDDYPQIRAAFTNYNAWVT 575 (660)
Q Consensus 497 p~~~~~~~~~~~l~tE~~a~~~~~~-~~r~~~ivN~~~~N~~G~p~gY~l~p~~~~~~~~~~~s~~~~ra~fa~~~lwVT 575 (660)
|+||+|+++++++++|++|.+++|+ +.|+|+|+|++++|.+|+|++|||+|+.+..+++.++|.+.+|++||+||||||
T Consensus 489 p~gNaf~~e~t~l~~e~dA~r~~d~~T~R~W~I~NpnkkN~~G~PvaYkLi~~~~~~~~~~~gs~v~~R~~Fa~~hlwVT 568 (654)
T COG3733 489 PYGNAFQVEETVLKNEKDACRDADPKTSRYWKIANPNKKNYLGNPVAYKLIPGHNPTPPVAEGSQVRHRAGFATKHLWVT 568 (654)
T ss_pred CccceEEEecccCccHHHHHhhcCCcccceEEecCcccccccCCCceeEEecCCCCCCcCCCCcchhhhhhhccceEEEe
Confidence 9999999999999999999999999 999999999999999999999999999999999999999999999999999999
Q ss_pred eecCCccCCCCcCCCCCCCCCChhhhccCCCceecCCeEEEEEecceeCCCCCCCCCcccccceeEEEeCCCCCCCCCCC
Q 006113 576 AYNISEKWAGGLYADQSRGDDTLSVWSKRNRSIENKDIVLWYTLGFHHVPCQEDFPVMPTFNGGFELRPSNFFESNPVLK 655 (660)
Q Consensus 576 ~y~~~E~~asg~y~~q~~~~~~l~~~~~~~e~i~~~DlV~W~t~G~~HvPr~ED~Pvmp~~~~~f~L~P~nFFd~nP~ld 655 (660)
+|++.|+||+|+|+||+.++.||++|+++||||+|||||+|||||+||+||+|||||||+++.||+|+|+||||+||+|+
T Consensus 569 ~y~p~ErYp~GdYpnq~~~~~GLp~yi~~d~sl~neDlVvW~T~GitHv~rpED~PvMP~e~~gf~L~P~gFFd~nPai~ 648 (654)
T COG3733 569 PYHPGERYPAGDYPNQSAGGKGLPEYIKDDRSLDNEDLVVWHTFGITHVPRPEDWPVMPVEWAGFLLKPRGFFDRNPAID 648 (654)
T ss_pred ccCcccccCCCCCCCCCCCCCChhhhhhccccccCcceEEEEecCceeccCcccCCccccchhceEeccccccccCcccC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCC
Q 006113 656 VVPP 659 (660)
Q Consensus 656 vP~~ 659 (660)
+|+.
T Consensus 649 lp~~ 652 (654)
T COG3733 649 LPRK 652 (654)
T ss_pred CCcc
Confidence 9974
No 5
>KOG1186 consensus Copper amine oxidase [Secondary metabolites biosynthesis, transport and catabolism]
Probab=100.00 E-value=1.5e-159 Score=1310.87 Aligned_cols=639 Identities=54% Similarity=0.917 Sum_probs=589.0
Q ss_pred eehhhhhcccCCCCCCCCCCCCCHHHHHHHHHHHHhhCC-CCCCceEEEEEEccCCChHhhHhhhhcCCCCCCCCEeEEE
Q 006113 10 FTLLLHIFFLIPSHQYHPLDSLTPSEFTQIQSIVTKAYP-KSTYNLTFQYVGLKEPTKQTVLSWLRNETTTNPPRQAFVV 88 (660)
Q Consensus 10 ~~~~~~~~~~~~~~~~HPLdpLs~~Ei~~a~~~l~~~~~-~~~~~~~f~~I~L~EP~K~~vl~~l~~~~~~~p~R~A~vv 88 (660)
..+-.+..+++...+.|||||||+.||..++.+|+.... ......-|.+|.|.||.|+-++.|+.+++.++|+|+|++|
T Consensus 12 ~~~~~~~~~~s~~~p~hPlDPLte~EL~kvr~iL~~~d~~s~~~~~~~~av~l~eP~K~~vlsw~~gP~~~pPpRRA~vV 91 (670)
T KOG1186|consen 12 PRLGPGLVSASQERPSHPLDPLTELELPKVAAILAHLDPGSPHPAFEAVAVVLFEPQKQPVLSWLSGPLPHPPPRRALVV 91 (670)
T ss_pred cccccccccccCCCCCCCcCccchhhhhHHHHHHhhcccCCCCCceEEEEEEecCCCcCccceeccCCCCCCCcceeEEE
Confidence 345556677888888999999999999999999998764 3334567999999999999999999843355788999999
Q ss_pred EEeCCeeEEEEEECCCCeEEEEeee-CCCCCCCCCHHHHHHHHHHHhcChHHHHHHHhcCCCCCceEEccccccccCCCC
Q 006113 89 ARIDHQTHEIIVDLSLQGITSKKTY-NGYGYPLLTGEEQEDANKLASTYPLFVASISKRGLKLEEVVCGSFTVGWFGEER 167 (660)
Q Consensus 89 ~~~~~~~~E~iV~L~~~~v~~~~~~-~~~~~p~~~~eE~~~~e~~~~~~p~~~~a~~~~Gi~~~~v~~d~w~~G~~~~~~ 167 (660)
.+.+++++|++|||+.+++++.... .+.+.|+++.+|+.++.+++++.+.|...+.+||+.++.|.|.+|..||||..+
T Consensus 92 aR~gg~t~e~~vdlst~evvs~~~~~~~~g~P~lT~~e~~~~s~~~l~~~~f~~si~~rG~~~s~vic~~~t~Gwyge~~ 171 (670)
T KOG1186|consen 92 ERHGGPTPEARVDLSTAEVVSIKHHLVGNGYPILTADELFNTSGRVLAFKPFCPRGLRRGDRMSWVVCYPNTSGWYGEHP 171 (670)
T ss_pred eecCCCceEEEEecchheeeecccccccCccccccHHHHHhhhcCCccccccchhhhccCCcceeEEEecceeeecccCC
Confidence 9999999999999999999997765 677899999999999999999999999999999999999999999999999764
Q ss_pred Cc-eeEEEEEEEEecCCCCcccccCCCeEEEEeCCCcEEEEEeCCceeeCCCCCCCCCccCcCCCCCCCCCCCceeeCCC
Q 006113 168 KN-KRIVKMMCYYLDGTLNADMRPIEGITMTVDLDEMKIIQFRDRIIVPVPKSDGTEYRESKLKPPFRPSLKRTTVVQPD 246 (660)
Q Consensus 168 ~~-rRl~~~~~~~r~~~~n~YahPl~gl~~~vD~~~~~vv~i~d~~~~~~p~~~~~~y~~~~~~~~~r~~lkp~~i~QPe 246 (660)
.+ ||+++..||++....|+|.+||+|++++||+.++||++++|++.+|+|...|++|+.+... ..+|++..+||
T Consensus 172 ~g~~Rlik~~~f~~~~~~n~y~rpieg~yi~vdld~~kVi~~~d~~~iP~P~~~Gt~~Rs~~~p-----~~~pLq~isPe 246 (670)
T KOG1186|consen 172 VGLERLIKHMAFYRAGWVNQQVRPIEGFYIIVDLDEMKVIAGRDRVRVPLPKAKGTELRSSVLP-----GFKPLQPISPE 246 (670)
T ss_pred cchhhhhhhcccccCCCeeEEEeecCceEEeeccccceEEEEecccccccCCCCCCccccccCC-----CCccccccCCC
Confidence 44 9999999999998899999999999999999999999999999999999888888654331 33447777799
Q ss_pred CCeeEEeccEEeeeceEEEEeecCCCceeEEeeEEeCCCCCcceEEEEeeeeeeEEeecCCCCcccccceeeecCCCCCC
Q 006113 247 GPSFNIVGSQIRWADWEFHLSFDARAGMIISVASIYDPEKQQSRQVLYKGHVSELFVPYMDLTEEWYYRSFFDVGEYGYG 326 (660)
Q Consensus 247 G~sf~v~g~~V~W~~W~f~~gf~~reGlvL~~v~~~D~~~~~~r~I~yrlsl~Em~vpYgdp~~~~~~k~~fD~geyG~G 326 (660)
||||+|+|+.|+|++|+|++||+.|+||||++|+|.| .+.-|+|+||+|+|||+||||||+++|++|+|||+||||+|
T Consensus 247 GP~FrVeG~~V~w~nW~Fh~~~~~r~Gl~is~v~~~d--~~~~r~v~Y~~s~~E~~vpYgdp~~~~~~~~y~D~Ge~G~G 324 (670)
T KOG1186|consen 247 GPGFRVEGHLVRWANWEFHIGFDVRAGLVISDASFFD--EDVYRRVLYKGSLSEMFVPYGDPSPDWYFKTYLDCGEFGLG 324 (670)
T ss_pred CCceEEEEEEEEeeccEEEEccCCccceEEEEEEEcC--CCceeeEEEEeeeeeeEEecCCCCchhheeeeecccccCCC
Confidence 9999999999999999999999999999999999999 44589999999999999999999999999999999999999
Q ss_pred cCCCCCCCCCCCCCCcEEeeeEEecCCCceeEecceEEEeEeeCCCceeccccCCCCcceEeeeeeceEEEEEEeeeecc
Q 006113 327 LSSLPLEPLRDCPPNAVFMDAYFAKNDGMPLKMPNVFCIFERYAGDVMWRHTEATDPEKLIREVRPEVSLVVRTVSTVGN 406 (660)
Q Consensus 327 ~~a~~L~~G~DCpg~~~YlD~~~~~~~g~p~~~~naiCi~E~d~~g~l~kH~~~~~~~~~~~~~r~~~~LVvr~i~TVgN 406 (660)
..|++|++|||||+.|+|||++++..+|.|.+++|||||||+++|.+||||++....+..++++|++.+||+||++||||
T Consensus 325 ~~a~~L~~g~DCp~~a~y~D~~f~~~~g~p~~~~n~~CifE~~~G~~l~rH~~~~~~~~~~~~~~~~~~LVvr~~~tv~N 404 (670)
T KOG1186|consen 325 QYAVSLAPGTDCPGNATYMDGHFAGQDGTPEKIPNAMCIFEKYAGDILWRHTEAEIPGLHITEVRPDVSLVVRMVTTVGN 404 (670)
T ss_pred ccccccccCCCCCCcceEEEEEEecCCCCcEEecCcEEEEEccCCCceeeccccccCCCcccccccccEEEEEEeeeecc
Confidence 99999999999999999999999999999999999999999998889999999766555788999999999999999999
Q ss_pred ccceEEEEEeeCccEEEEEeEeeeeeeeeccccCCCCcccccccceeccCcccccceeeEEeeeecCCCCCCCceEEEEE
Q 006113 407 YDYINDWEFKQSGSIKVTVGLTGMLEVRGTNYTHKDQIEEDVYGTLIAENTIGVRHDHFLTYRLDLDVDGDANSFVKSKL 486 (660)
Q Consensus 407 YdY~~~w~F~~DGtIe~ev~aTGil~~~~~~~~~~~~~~~~~yGt~V~~~~~~~~HqH~f~~RlD~dIdG~~Nsv~~~d~ 486 (660)
|||||||+||+||.||++|+|||||+++++.+... ...|||+|++++.|++|||+|+|||||||||.+|++.-.+.
T Consensus 405 YdYi~d~~F~~~G~ie~~v~lTG~l~~~~~~~~~~----~~~~Gt~v~~~~ig~~H~H~~~~rldldvdG~~n~~~v~~~ 480 (670)
T KOG1186|consen 405 YDYIVDYEFKPSGVIEAGVGLTGVLEVKPVEYGET----SDIYGTIVAENTIGVNHDHFVTFRLDLDVDGTKNNSFVRDE 480 (670)
T ss_pred cceEEEEEEecCCeEEEEEeeEEEEEeeccccccc----cccccceecccccccccceEEEEEEcccccCCccceeeeee
Confidence 99999999999999999999999999998865321 35799999999999999999999999999999655555566
Q ss_pred EEeecCCC-CCCcceeEEEEEEEeechhhHhhhcCC-CCcEEEEecCCCCCCCCCceeEEEeeCCCcCcCCCCCChhhhc
Q 006113 487 RTVRVNDH-GSPRKSYWTVDRETARTESAARIKLGS-EPVDLLFVNPNKKTKMGNLIGYRLVPYGVVGPLLSDDDYPQIR 564 (660)
Q Consensus 487 v~~~~~~~-~np~~~~~~~~~~~l~tE~~a~~~~~~-~~r~~~ivN~~~~N~~G~p~gY~l~p~~~~~~~~~~~s~~~~r 564 (660)
+..+...+ .++++++|++++++++||++|+.+++. +++.|.|+|++++|++|+|+||||+|++++.++++++++.++|
T Consensus 481 ~~~~~~~~~~~~~~~~~~~~~~~~kte~~~~~~~~~~~~~~~~~~n~n~~~~~G~~~gYrl~~~s~a~~ll~~~~~~~~r 560 (670)
T KOG1186|consen 481 LVTPRTPPSVTPRKSYWTTKRKTAKTEAEARAKLNGLKAEELLVVNPNKKTKHGNPVGYRLVPGSTAGPLLPQDDYPQIR 560 (670)
T ss_pred EeecccCCCCCcccchhhhhhhhhhhHHHHhhhhccCCCceEEEECCCCccccCCccceEEeeCCcccccCCCCchHHhh
Confidence 66666555 567899999999999999999999998 9999999999999999999999999999999999999999999
Q ss_pred ccccccceEEeeecCCccCCCCcCCCCCCCCCChhhhccCCCceecCCeEEEEEecceeCCCCCCCCCcccccceeEEEe
Q 006113 565 AAFTNYNAWVTAYNISEKWAGGLYADQSRGDDTLSVWSKRNRSIENKDIVLWYTLGFHHVPCQEDFPVMPTFNGGFELRP 644 (660)
Q Consensus 565 a~fa~~~lwVT~y~~~E~~asg~y~~q~~~~~~l~~~~~~~e~i~~~DlV~W~t~G~~HvPr~ED~Pvmp~~~~~f~L~P 644 (660)
|+|++|+||||+|+++|.||||.|.+|++++++|..|.+.|++|+|+|||+|||+||||||+.||||+|||+..||.|||
T Consensus 561 ~af~~y~l~VT~y~~~E~~~~g~y~~~~~~~~tl~~w~~~nr~ien~DiV~W~t~Gf~HiP~~ED~P~mpt~~~gF~LrP 640 (670)
T KOG1186|consen 561 AAFTNYNLWVTPYNESEVWASGLYADQSQGDDTLAVWSQRNRSIENKDIVMWYTVGFHHVPCQEDFPTMPTLGGGFELRP 640 (670)
T ss_pred hhhhcceeEEeccCccccCcccccccCCCCCCcceehhhcccccccCceEEEEEcceeecCchhcCCCCcccCCceeecc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCCCCCCCCCCCC
Q 006113 645 SNFFESNPVLKVVPP 659 (660)
Q Consensus 645 ~nFFd~nP~ldvP~~ 659 (660)
+|||++||+|++||+
T Consensus 641 ~NFF~~nP~l~~~p~ 655 (670)
T KOG1186|consen 641 TNFFERNPSLKSPPS 655 (670)
T ss_pred ccccccCccccCCCc
Confidence 999999999999986
No 6
>PF01179 Cu_amine_oxid: Copper amine oxidase, enzyme domain; InterPro: IPR015798 Amine oxidases (AO) are enzymes that catalyse the oxidation of a wide range of biogenic amines including many neurotransmitters, histamine and xenobiotic amines. There are two classes of amine oxidases: flavin-containing (1.4.3.4 from EC) and copper-containing (1.4.3.6 from EC). Copper-containing AO act as a disulphide-linked homodimer. They catalyse the oxidation of primary amines to aldehydes, with the subsequent release of ammonia and hydrogen peroxide, which requires one copper ion per subunit and topaquinone as cofactor []: RCH2NH2 + H2O + O2 = RCHO + NH3 + H2O2 Copper-containing amine oxidases are found in bacteria, fungi, plants and animals. In prokaryotes, the enzyme enables various amine substrates to be used as sources of carbon and nitrogen [, ]. In eukaryotes they have a broader range of functions, including cell differentiation and growth, wound healing, detoxification and cell signalling []. The copper amine oxidases occur as mushroom-shaped homodimers of 70-95 kDa, each monomer containing a copper ion and a covalently bound redox cofactor, topaquinone (TPQ). TPQ is formed by post-translational modification of a conserved tyrosine residue. The copper ion is coordinated with three histidine residues and two water molecules in a distorted square pyramidal geometry, and has a dual function in catalysis and TPQ biogenesis. The catalytic domain is the largest of the 3-4 domains found in copper amine oxidases, and consists of a beta sandwich of 18 strands in two sheets. The active site is buried and requires a conformational change to allow the substrate access. The two N-terminal domains share a common structural fold, its core consisting of a five-stranded antiparallel beta sheet twisted around an alpha helix. The D1 domains from the two subunits comprise the stalk, of the mushroom-shaped dimer, and interact with each other but do not pack tightly against each other [, ]. This entry represents the C-terminal catalytic domain of copper amine oxidases, and has a super-sandwich fold consisting of 18 beta-strands in 2 sheets []. A domain with a similar structural fold can be found as the third domain in lysyl oxidase PplO [].; GO: 0005507 copper ion binding, 0008131 primary amine oxidase activity, 0048038 quinone binding, 0009308 amine metabolic process, 0055114 oxidation-reduction process; PDB: 1US1_A 2C11_B 3ALA_E 2Y73_B 2C10_B 1PU4_B 2Y74_B 1W2Z_D 1KSI_B 1RKY_A ....
Probab=100.00 E-value=2.8e-143 Score=1167.85 Aligned_cols=408 Identities=41% Similarity=0.709 Sum_probs=366.0
Q ss_pred CceeeCCCCCeeEEeccEEeeeceEEEEeecCCCceeEEeeEEeCCCCCcceEEEEeeeeeeEEeecCCCCcccccceee
Q 006113 239 RTTVVQPDGPSFNIVGSQIRWADWEFHLSFDARAGMIISVASIYDPEKQQSRQVLYKGHVSELFVPYMDLTEEWYYRSFF 318 (660)
Q Consensus 239 p~~i~QPeG~sf~v~g~~V~W~~W~f~~gf~~reGlvL~~v~~~D~~~~~~r~I~yrlsl~Em~vpYgdp~~~~~~k~~f 318 (660)
||+|+||||+||+|+|++|+||+|+||++||+|||||||||+|.| +.++|+||+|||||+||||||+++|++|+||
T Consensus 1 Pl~i~qP~G~sf~v~g~~v~w~~W~f~~~~~~r~Gl~l~dV~y~~----~~~~I~yr~sl~Em~vpY~d~~~~~~~~~~~ 76 (413)
T PF01179_consen 1 PLHIVQPEGPSFTVDGNYVEWQGWSFRVGFNPREGLVLHDVRYKG----ERRPILYRLSLQEMVVPYGDPDPPHHRKNAF 76 (413)
T ss_dssp -EEEE-TTS-SEEEETTEEEETTEEEEEEEETTTEEEEEEEEETT----EEEEEEEEEEEEEEEEEEE-SSTTHHH-EEE
T ss_pred CcceeCCCCCCEEEeCCEEEeCCcEEEEECCCCccceEEEEEEeC----CCccEEEEEeeeeeeeecCCCCchhhccccc
Confidence 899999999999999999999999999999999999999999977 2225999999999999999999999999999
Q ss_pred ecCCCCCCcCCCCCCCCCCCCCCcEEeeeEEecCCCceeEecceEEEeEeeCCCceeccccCCCCcceEeeeeeceEEEE
Q 006113 319 DVGEYGYGLSSLPLEPLRDCPPNAVFMDAYFAKNDGMPLKMPNVFCIFERYAGDVMWRHTEATDPEKLIREVRPEVSLVV 398 (660)
Q Consensus 319 D~geyG~G~~a~~L~~G~DCpg~~~YlD~~~~~~~g~p~~~~naiCi~E~d~~g~l~kH~~~~~~~~~~~~~r~~~~LVv 398 (660)
|+||||||.++++|++||||||+|+|||+++.+++|+|++++|||||||+| .||||||++++++.. .+||+++|||
T Consensus 77 D~geyG~G~~~~~L~~G~DCpg~~~yld~~~~~~~g~p~~~~naiCi~E~d-~G~l~kH~~~~~~~~---~~~r~~~LVv 152 (413)
T PF01179_consen 77 DSGEYGLGSMANSLVLGCDCPGTITYLDAVLADDSGEPVTIPNAICIFEED-AGPLWKHTDYRTGRF---EVRRSRRLVV 152 (413)
T ss_dssp HHHHTTTTTTBE-STTTTSS-TTSEEEEEEEEETTSSEEEEEEEEEEEEEE-EEEEEEEEETTSSEE---EEEEEEEEEE
T ss_pred cccccccCccccccccCCCCCceeEEcceEEECCCCCceeccceEEEEEec-CCchhhccccccccc---ceeeccEEEE
Confidence 999999999999999999999999999999999999999999999999999 559999999998655 4455669999
Q ss_pred EEeeeeccccceEEEEEeeCccEEEEEeEeeeeeeeeccccCCCCcccccccceeccCcccccceeeEEeeeecCCCCCC
Q 006113 399 RTVSTVGNYDYINDWEFKQSGSIKVTVGLTGMLEVRGTNYTHKDQIEEDVYGTLIAENTIGVRHDHFLTYRLDLDVDGDA 478 (660)
Q Consensus 399 r~i~TVgNYdY~~~w~F~~DGtIe~ev~aTGil~~~~~~~~~~~~~~~~~yGt~V~~~~~~~~HqH~f~~RlD~dIdG~~ 478 (660)
|+|+|||||||+|+|+|||||+||++|+|||||++.... ..++.+||++|+|+++|++|||+|||||||||||++
T Consensus 153 r~i~TV~NYDYi~~~~F~~dG~Ie~~v~aTGil~~~~~~-----~~~~~~yG~~V~~~~~a~~HqH~f~~RlD~dIdG~~ 227 (413)
T PF01179_consen 153 RTISTVGNYDYIFDWIFYQDGSIEVEVRATGILSTSPYA-----PGEQSPYGTRVAPGVMAPNHQHFFNFRLDFDIDGTN 227 (413)
T ss_dssp EEEEEETTEEEEEEEEEETTS-EEEEEEEEE---EEETT-----TTCGGGSEEEEETTEEEEEEEEEEEEEEEE-TTSSE
T ss_pred EEEEeccccceEEEEEEecCceEEEEEEeeeEEEEEecC-----CCCccCCcceEcCCccccceeEEEEEEEccccCCCC
Confidence 999999999999999999999999999999999987642 122467999999999999999999999999999999
Q ss_pred CceEEEEEEEeecC--CCCCCcceeEEEEEEEeechhhHhhhcCC-CCcEEEEecCCCCCCCCCceeEEEeeCCCcCcCC
Q 006113 479 NSFVKSKLRTVRVN--DHGSPRKSYWTVDRETARTESAARIKLGS-EPVDLLFVNPNKKTKMGNLIGYRLVPYGVVGPLL 555 (660)
Q Consensus 479 Nsv~~~d~v~~~~~--~~~np~~~~~~~~~~~l~tE~~a~~~~~~-~~r~~~ivN~~~~N~~G~p~gY~l~p~~~~~~~~ 555 (660)
|||+++|+++++.+ ...||++++|+++++++++|++|++++++ ++|+|+|+|++++|++|+|+||||+|++++++++
T Consensus 228 Nsv~~~d~~~~~~~~~~~~np~~~~~~~~~t~~~tE~~a~~~~~~~~~r~w~vvN~~~~N~~G~p~gY~l~~~~~~~~l~ 307 (413)
T PF01179_consen 228 NSVVEVDIVPEPVTTPWSPNPYGNAFKTERTVLETEAEAARDFDPSTPRYWKVVNPNKKNPWGHPVGYRLQPGSSAHLLA 307 (413)
T ss_dssp EEEEEEEEEEEEEEETTSTTSEEEEEEEEEEEE-BGGGGEBETTCGGTEEEEEEEEEEEETTSSEEEEEEEEECBSS-SS
T ss_pred CeEEEEEeEEcccccCCCCCCccceeEEEEEeeCChhHhhhccCCCCccEEEEEcCCccccccCCceEEEecCCcccccC
Confidence 99999999999873 33789999999999999999999999999 9999999999999999999999999999999999
Q ss_pred CCCChhhhcccccccceEEeeecCCccCCCCcCCCCCCCCCChhhhccCCCceecCCeEEEEEecceeCCCCCCCCCccc
Q 006113 556 SDDDYPQIRAAFTNYNAWVTAYNISEKWAGGLYADQSRGDDTLSVWSKRNRSIENKDIVLWYTLGFHHVPCQEDFPVMPT 635 (660)
Q Consensus 556 ~~~s~~~~ra~fa~~~lwVT~y~~~E~~asg~y~~q~~~~~~l~~~~~~~e~i~~~DlV~W~t~G~~HvPr~ED~Pvmp~ 635 (660)
+++|+..+||+||+|+||||||+|+|+||||+|++|++++.+|++|+++||+|+|||||+|+|||+||+||+|||||||+
T Consensus 308 ~~~s~~~~ra~fa~~~lwVT~y~d~E~~asg~y~~q~~~~~~l~~~~~~~e~i~~~DiV~W~t~G~~HvPr~ED~Pvmp~ 387 (413)
T PF01179_consen 308 PPDSWVARRASFARHHLWVTKYKDSERYASGEYNNQSPGDVGLPDWIADNESIENEDIVVWVTFGFHHVPRPEDWPVMPV 387 (413)
T ss_dssp STTSCHHHHTGGGGSSEEEEE--TTGS-ST-TTTTT-SSSSSHHHHHTTSSB-SSEEEEEEEEEEEEE---GGGSSSEEE
T ss_pred CCcchhhhccccccCceEEeecCCCccCCCCCCccCCCCCCCHHHHhccCCcccCCCeEEEEeccccccCCcccCCCCCC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccceeEEEeCCCCCCCCCCCCCCC
Q 006113 636 FNGGFELRPSNFFESNPVLKVVPP 659 (660)
Q Consensus 636 ~~~~f~L~P~nFFd~nP~ldvP~~ 659 (660)
+++||+|||+|||++||+||+|++
T Consensus 388 ~~~gf~L~P~nFF~~nPald~p~~ 411 (413)
T PF01179_consen 388 EWLGFMLKPFNFFDRNPALDVPPS 411 (413)
T ss_dssp EEEEEEEEEESSSSSSTTTTCTTC
T ss_pred cEEEEEEEcCCCCCCCccccCCCC
Confidence 999999999999999999999986
No 7
>PF02728 Cu_amine_oxidN3: Copper amine oxidase, N3 domain; InterPro: IPR015802 Amine oxidases (AO) are enzymes that catalyse the oxidation of a wide range of biogenic amines including many neurotransmitters, histamine and xenobiotic amines. There are two classes of amine oxidases: flavin-containing (1.4.3.4 from EC) and copper-containing (1.4.3.6 from EC). Copper-containing AO act as a disulphide-linked homodimer. They catalyse the oxidation of primary amines to aldehydes, with the subsequent release of ammonia and hydrogen peroxide, which requires one copper ion per subunit and topaquinone as cofactor []: RCH2NH2 + H2O + O2 = RCHO + NH3 + H2O2 Copper-containing amine oxidases are found in bacteria, fungi, plants and animals. In prokaryotes, the enzyme enables various amine substrates to be used as sources of carbon and nitrogen [, ]. In eukaryotes they have a broader range of functions, including cell differentiation and growth, wound healing, detoxification and cell signalling []. The copper amine oxidases occur as mushroom-shaped homodimers of 70-95 kDa, each monomer containing a copper ion and a covalently bound redox cofactor, topaquinone (TPQ). TPQ is formed by post-translational modification of a conserved tyrosine residue. The copper ion is coordinated with three histidine residues and two water molecules in a distorted square pyramidal geometry, and has a dual function in catalysis and TPQ biogenesis. The catalytic domain is the largest of the 3-4 domains found in copper amine oxidases, and consists of a beta sandwich of 18 strands in two sheets. The active site is buried and requires a conformational change to allow the substrate access. The two N-terminal domains share a common structural fold, its core consisting of a five-stranded antiparallel beta sheet twisted around an alpha helix. The D1 domains from the two subunits comprise the stalk, of the mushroom-shaped dimer, and interact with each other but do not pack tightly against each other [, ]. This entry represents one (N3) of the two N-terminal domains (N2/N3) that share a similar structure.; GO: 0005507 copper ion binding, 0008131 primary amine oxidase activity, 0048038 quinone binding, 0009308 amine metabolic process, 0055114 oxidation-reduction process; PDB: 1TU5_A 2PNC_B 3MPH_B 3HII_B 3HI7_A 3K5T_A 3HIG_A 1SPU_A 2WGQ_A 2WO0_A ....
Probab=99.91 E-value=2.5e-24 Score=193.01 Aligned_cols=99 Identities=37% Similarity=0.675 Sum_probs=84.8
Q ss_pred CCCCHHHHHHHHHHHhcChHHHHHHHhcCC-CCCceEEccccccccCCCCCceeEEEEEEEEecCCCCcccccCCCeEEE
Q 006113 119 PLLTGEEQEDANKLASTYPLFVASISKRGL-KLEEVVCGSFTVGWFGEERKNKRIVKMMCYYLDGTLNADMRPIEGITMT 197 (660)
Q Consensus 119 p~~~~eE~~~~e~~~~~~p~~~~a~~~~Gi-~~~~v~~d~w~~G~~~~~~~~rRl~~~~~~~r~~~~n~YahPl~gl~~~ 197 (660)
|+++.+||.+++++++++|+|+++|++||| +++.|+|++|++|++|.+++++|++|++||+|...+|+|||||+||+++
T Consensus 1 ppi~~~E~~~~~~~~~~~p~~~~al~~rgi~d~~~v~~~pw~~g~~g~~~~g~Rl~~~~~~~r~~~~n~YahPi~gl~~~ 80 (101)
T PF02728_consen 1 PPITLEEFAEAEEIVKADPEFQAALKKRGITDMDEVCCDPWSYGPFGEESEGRRLTWVLCFMRDSGNNFYAHPIEGLEPL 80 (101)
T ss_dssp S---HHHHHHHHHHHHTGHHHHHHHHHTTCSCGGGEEEEEEE-SSSSSSTTTS-EEEEEEEE-SSTS-GGGSEEECEEEE
T ss_pred CCcCHHHHHHHHHHHHHCHHHHHHHHHhCCCCcCeEEEeeecccCCCCCCCCceEEEEEEEEEcCCCcccccccCceEEE
Confidence 689999999999999999999999999999 6899999999999998766689999999999986569999999999999
Q ss_pred EeCCCcEEEEEeCCc-eeeCC
Q 006113 198 VDLDEMKIIQFRDRI-IVPVP 217 (660)
Q Consensus 198 vD~~~~~vv~i~d~~-~~~~p 217 (660)
||++++||++|+|++ .+|+|
T Consensus 81 vD~~~~~vi~i~d~~v~~p~p 101 (101)
T PF02728_consen 81 VDLDSMEVIRIEDRGVFYPGP 101 (101)
T ss_dssp EETTTTEEEEEEEEEEEETT-
T ss_pred EECCCCEEEEEEeCCceeeCC
Confidence 999999999999988 56665
No 8
>PF02727 Cu_amine_oxidN2: Copper amine oxidase, N2 domain; InterPro: IPR015800 Amine oxidases (AO) are enzymes that catalyse the oxidation of a wide range of biogenic amines including many neurotransmitters, histamine and xenobiotic amines. There are two classes of amine oxidases: flavin-containing (1.4.3.4 from EC) and copper-containing (1.4.3.6 from EC). Copper-containing AO act as a disulphide-linked homodimer. They catalyse the oxidation of primary amines to aldehydes, with the subsequent release of ammonia and hydrogen peroxide, which requires one copper ion per subunit and topaquinone as cofactor []: RCH2NH2 + H2O + O2 = RCHO + NH3 + H2O2 Copper-containing amine oxidases are found in bacteria, fungi, plants and animals. In prokaryotes, the enzyme enables various amine substrates to be used as sources of carbon and nitrogen [, ]. In eukaryotes they have a broader range of functions, including cell differentiation and growth, wound healing, detoxification and cell signalling []. The copper amine oxidases occur as mushroom-shaped homodimers of 70-95 kDa, each monomer containing a copper ion and a covalently bound redox cofactor, topaquinone (TPQ). TPQ is formed by post-translational modification of a conserved tyrosine residue. The copper ion is coordinated with three histidine residues and two water molecules in a distorted square pyramidal geometry, and has a dual function in catalysis and TPQ biogenesis. The catalytic domain is the largest of the 3-4 domains found in copper amine oxidases, and consists of a beta sandwich of 18 strands in two sheets. The active site is buried and requires a conformational change to allow the substrate access. The two N-terminal domains share a common structural fold, its core consisting of a five-stranded antiparallel beta sheet twisted around an alpha helix. The D1 domains from the two subunits comprise the stalk, of the mushroom-shaped dimer, and interact with each other but do not pack tightly against each other [, ]. This entry represents one (N2) of the two N-terminal domains (N2/N3) that share a similar structure.; GO: 0005507 copper ion binding, 0008131 primary amine oxidase activity, 0048038 quinone binding, 0009308 amine metabolic process, 0055114 oxidation-reduction process; PDB: 1W2Z_A 1KSI_B 1US1_A 2C11_B 3ALA_E 2Y73_B 2C10_B 1PU4_B 2Y74_B 3SX1_A ....
Probab=99.77 E-value=1.4e-19 Score=157.86 Aligned_cols=85 Identities=35% Similarity=0.481 Sum_probs=71.1
Q ss_pred CCCCCCCHHHHHHHHHHHHhhCCCCCCceEEEEEEccCCChHhhHhhhhcCCCCCCCCEeEEEEEeCCeeEEEEEECCCC
Q 006113 26 HPLDSLTPSEFTQIQSIVTKAYPKSTYNLTFQYVGLKEPTKQTVLSWLRNETTTNPPRQAFVVARIDHQTHEIIVDLSLQ 105 (660)
Q Consensus 26 HPLdpLs~~Ei~~a~~~l~~~~~~~~~~~~f~~I~L~EP~K~~vl~~l~~~~~~~p~R~A~vv~~~~~~~~E~iV~L~~~ 105 (660)
|||||||++||++|+++|+++......+++|.+|+|.||+|++|++| +.+ ++.|+|+|+|+++++++.+|++|||+.+
T Consensus 1 HPLdpLt~~Ei~~a~~il~~~~~~~~~~~~F~~I~L~EP~K~~vl~~-~~~-~~~p~R~A~vv~~~~~~~~e~vVdl~~~ 78 (86)
T PF02727_consen 1 HPLDPLTAEEIQAAAAILRDAHPLAGEKNRFRSIELQEPPKAEVLAF-ERG-GPPPPRRARVVVYDGGQSYEAVVDLTSG 78 (86)
T ss_dssp HCCHHHHHHHHHHHHHHHHHHTGTTTTSEEEEEEEEE---HHHHHHH-HCC-TTTS-EEEEEEEEETSSSSEEEEEEEEE
T ss_pred CCCCCCCHHHHHHHHHHHHhccccCCCCeEEEEEEeCCCCHHHHhcc-ccC-CcCCCeEEEEEEEECCeeeeEEEECcCC
Confidence 99999999999999999999983333578999999999999999999 443 3458999999999987779999999999
Q ss_pred eEEEEee
Q 006113 106 GITSKKT 112 (660)
Q Consensus 106 ~v~~~~~ 112 (660)
+|++|+.
T Consensus 79 ~V~~~~~ 85 (86)
T PF02727_consen 79 KVVSWKE 85 (86)
T ss_dssp ECSCEEE
T ss_pred ccccCcc
Confidence 9988864
No 9
>PF04270 Strep_his_triad: Streptococcal histidine triad protein ; InterPro: IPR006270 This entry represents a repeated sequence region that includes a His-X-X-His-X-His (histidine triad) motif, which is found in family of Streptococcal proteins. Members of the family are suggested to cleave human complement component 3, and family member PhpA has been shown in vaccine studies to be a protective antigen in mice []. ; PDB: 2CS7_C.
Probab=43.38 E-value=13 Score=30.07 Aligned_cols=19 Identities=26% Similarity=0.415 Sum_probs=15.9
Q ss_pred CCCCCCHHHHHHHHHHHHh
Q 006113 27 PLDSLTPSEFTQIQSIVTK 45 (660)
Q Consensus 27 PLdpLs~~Ei~~a~~~l~~ 45 (660)
|..+||+.|+++|.++|++
T Consensus 34 ~k~dLs~~E~~aA~~~~~~ 52 (53)
T PF04270_consen 34 PKSDLSASELKAAQAYLAG 52 (53)
T ss_dssp EGGGS-HHHHHHHHHHHH-
T ss_pred chhhCCHHHHHHHHHHHhc
Confidence 7889999999999999875
No 10
>PF02728 Cu_amine_oxidN3: Copper amine oxidase, N3 domain; InterPro: IPR015802 Amine oxidases (AO) are enzymes that catalyse the oxidation of a wide range of biogenic amines including many neurotransmitters, histamine and xenobiotic amines. There are two classes of amine oxidases: flavin-containing (1.4.3.4 from EC) and copper-containing (1.4.3.6 from EC). Copper-containing AO act as a disulphide-linked homodimer. They catalyse the oxidation of primary amines to aldehydes, with the subsequent release of ammonia and hydrogen peroxide, which requires one copper ion per subunit and topaquinone as cofactor []: RCH2NH2 + H2O + O2 = RCHO + NH3 + H2O2 Copper-containing amine oxidases are found in bacteria, fungi, plants and animals. In prokaryotes, the enzyme enables various amine substrates to be used as sources of carbon and nitrogen [, ]. In eukaryotes they have a broader range of functions, including cell differentiation and growth, wound healing, detoxification and cell signalling []. The copper amine oxidases occur as mushroom-shaped homodimers of 70-95 kDa, each monomer containing a copper ion and a covalently bound redox cofactor, topaquinone (TPQ). TPQ is formed by post-translational modification of a conserved tyrosine residue. The copper ion is coordinated with three histidine residues and two water molecules in a distorted square pyramidal geometry, and has a dual function in catalysis and TPQ biogenesis. The catalytic domain is the largest of the 3-4 domains found in copper amine oxidases, and consists of a beta sandwich of 18 strands in two sheets. The active site is buried and requires a conformational change to allow the substrate access. The two N-terminal domains share a common structural fold, its core consisting of a five-stranded antiparallel beta sheet twisted around an alpha helix. The D1 domains from the two subunits comprise the stalk, of the mushroom-shaped dimer, and interact with each other but do not pack tightly against each other [, ]. This entry represents one (N3) of the two N-terminal domains (N2/N3) that share a similar structure.; GO: 0005507 copper ion binding, 0008131 primary amine oxidase activity, 0048038 quinone binding, 0009308 amine metabolic process, 0055114 oxidation-reduction process; PDB: 1TU5_A 2PNC_B 3MPH_B 3HII_B 3HI7_A 3K5T_A 3HIG_A 1SPU_A 2WGQ_A 2WO0_A ....
Probab=36.80 E-value=9.7 Score=34.16 Aligned_cols=80 Identities=18% Similarity=0.221 Sum_probs=40.7
Q ss_pred CCCHHHHHHHHHHHHhhCCCCCCceEEEEEEccCCChHhhHhhhhcC-CCC-CCCCEeEEEEEeC--C-e------e-EE
Q 006113 30 SLTPSEFTQIQSIVTKAYPKSTYNLTFQYVGLKEPTKQTVLSWLRNE-TTT-NPPRQAFVVARID--H-Q------T-HE 97 (660)
Q Consensus 30 pLs~~Ei~~a~~~l~~~~~~~~~~~~f~~I~L~EP~K~~vl~~l~~~-~~~-~p~R~A~vv~~~~--~-~------~-~E 97 (660)
|+|.+|+.++.+++++..... ..+ ....|.++.+-.+..|-.+. +.. .-.|.+.+.+|.. + . - .+
T Consensus 2 pi~~~E~~~~~~~~~~~p~~~-~al--~~rgi~d~~~v~~~pw~~g~~g~~~~g~Rl~~~~~~~r~~~~n~YahPi~gl~ 78 (101)
T PF02728_consen 2 PITLEEFAEAEEIVKADPEFQ-AAL--KKRGITDMDEVCCDPWSYGPFGEESEGRRLTWVLCFMRDSGNNFYAHPIEGLE 78 (101)
T ss_dssp ---HHHHHHHHHHHHTGHHHH-HHH--HHTTCSCGGGEEEEEEE-SSSSSSTTTS-EEEEEEEE-SSTS-GGGSEEECEE
T ss_pred CcCHHHHHHHHHHHHHCHHHH-HHH--HHhCCCCcCeEEEeeecccCCCCCCCCceEEEEEEEEEcCCCcccccccCceE
Confidence 689999999999998653200 000 00012222222333343221 111 2358887877762 2 1 1 48
Q ss_pred EEEECCCCeEEEEee
Q 006113 98 IIVDLSLQGITSKKT 112 (660)
Q Consensus 98 ~iV~L~~~~v~~~~~ 112 (660)
++||+.+.+|+++..
T Consensus 79 ~~vD~~~~~vi~i~d 93 (101)
T PF02728_consen 79 PLVDLDSMEVIRIED 93 (101)
T ss_dssp EEEETTTTEEEEEEE
T ss_pred EEEECCCCEEEEEEe
Confidence 899999999998764
Done!