Query 006114
Match_columns 660
No_of_seqs 267 out of 1548
Neff 6.5
Searched_HMMs 46136
Date Thu Mar 28 18:33:05 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/006114.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/006114hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG0166 Karyopherin (importin) 99.9 2.8E-23 6E-28 228.2 25.4 275 366-650 106-390 (514)
2 PLN03200 cellulose synthase-in 99.9 2E-22 4.3E-27 248.7 29.2 279 369-658 404-731 (2102)
3 PLN03200 cellulose synthase-in 99.9 2.4E-22 5.2E-27 248.0 29.0 273 366-647 443-759 (2102)
4 KOG4224 Armadillo repeat prote 99.9 1.7E-22 3.7E-27 209.7 21.4 277 370-657 127-412 (550)
5 KOG4224 Armadillo repeat prote 99.9 3.8E-23 8.2E-28 214.6 14.6 264 374-648 90-358 (550)
6 COG5064 SRP1 Karyopherin (impo 99.9 1.8E-22 4E-27 208.0 16.3 248 394-650 101-396 (526)
7 KOG0166 Karyopherin (importin) 99.9 2.2E-21 4.7E-26 213.4 24.7 250 393-651 95-349 (514)
8 COG5064 SRP1 Karyopherin (impo 99.8 3.1E-20 6.8E-25 191.6 16.9 264 366-638 111-429 (526)
9 PF05804 KAP: Kinesin-associat 99.8 1.3E-16 2.8E-21 184.0 28.8 262 366-638 287-591 (708)
10 KOG4199 Uncharacterized conser 99.7 1.7E-15 3.7E-20 156.9 23.1 256 394-657 176-451 (461)
11 PF05804 KAP: Kinesin-associat 99.7 5.6E-15 1.2E-19 170.6 25.7 243 393-652 276-519 (708)
12 KOG4199 Uncharacterized conser 99.6 1.7E-14 3.6E-19 149.6 18.1 226 383-617 216-450 (461)
13 KOG1048 Neural adherens juncti 99.6 1E-13 2.2E-18 157.5 19.2 243 393-637 260-620 (717)
14 PF04826 Arm_2: Armadillo-like 99.5 4.4E-13 9.5E-18 138.6 20.4 196 403-612 8-206 (254)
15 KOG2122 Beta-catenin-binding p 99.5 1.3E-11 2.8E-16 145.3 30.1 241 393-639 325-588 (2195)
16 PF04826 Arm_2: Armadillo-like 99.4 4.6E-12 1E-16 131.1 18.8 182 444-639 8-191 (254)
17 KOG1048 Neural adherens juncti 99.4 2.2E-12 4.7E-17 146.8 14.9 197 405-611 231-452 (717)
18 cd00020 ARM Armadillo/beta-cat 99.3 3.6E-11 7.9E-16 107.8 14.5 116 443-560 2-119 (120)
19 cd00020 ARM Armadillo/beta-cat 99.3 3.5E-11 7.6E-16 107.9 14.2 116 402-519 2-119 (120)
20 PRK09687 putative lyase; Provi 99.3 1.2E-10 2.6E-15 122.6 18.7 236 370-649 24-278 (280)
21 KOG2122 Beta-catenin-binding p 99.3 3.7E-11 8E-16 141.6 13.5 208 398-613 384-603 (2195)
22 KOG0240 Kinesin (SMY1 subfamil 99.2 6E-10 1.3E-14 122.7 21.1 224 1-280 329-557 (607)
23 PF10508 Proteasom_PSMB: Prote 99.2 2E-09 4.3E-14 122.2 24.0 274 367-651 75-364 (503)
24 PF10508 Proteasom_PSMB: Prote 99.2 1.8E-09 3.8E-14 122.6 22.7 215 410-636 41-256 (503)
25 KOG4500 Rho/Rac GTPase guanine 99.1 1.9E-09 4.2E-14 115.3 17.6 227 404-639 84-418 (604)
26 PRK09687 putative lyase; Provi 99.1 4.4E-09 9.5E-14 110.7 20.1 170 403-611 19-188 (280)
27 KOG1222 Kinesin associated pro 99.1 6.4E-09 1.4E-13 112.5 17.9 308 318-638 255-605 (791)
28 PF03224 V-ATPase_H_N: V-ATPas 99.0 1.4E-08 3E-13 108.6 18.9 224 409-642 57-303 (312)
29 cd00256 VATPase_H VATPase_H, r 99.0 1.2E-08 2.5E-13 112.5 17.3 194 410-611 146-425 (429)
30 KOG2160 Armadillo/beta-catenin 98.9 2.3E-07 5E-12 98.6 20.8 186 418-612 94-283 (342)
31 PF03224 V-ATPase_H_N: V-ATPas 98.8 1.2E-07 2.5E-12 101.4 17.9 187 408-601 106-304 (312)
32 KOG3678 SARM protein (with ste 98.8 6.6E-08 1.4E-12 104.4 15.2 186 441-636 173-361 (832)
33 PRK13800 putative oxidoreducta 98.8 2.7E-07 5.8E-12 111.8 22.2 244 370-649 622-895 (897)
34 KOG2160 Armadillo/beta-catenin 98.8 2.2E-07 4.7E-12 98.7 17.7 169 393-561 110-282 (342)
35 KOG0168 Putative ubiquitin fus 98.8 1.2E-07 2.6E-12 108.6 16.5 216 409-635 169-392 (1051)
36 PRK13800 putative oxidoreducta 98.8 3.4E-07 7.5E-12 110.9 20.8 120 450-608 777-896 (897)
37 KOG4646 Uncharacterized conser 98.7 8.5E-08 1.8E-12 88.9 10.3 152 448-608 16-167 (173)
38 KOG0168 Putative ubiquitin fus 98.7 3.5E-07 7.7E-12 104.8 17.3 223 403-635 207-438 (1051)
39 KOG3678 SARM protein (with ste 98.7 1.2E-06 2.5E-11 95.0 20.4 244 401-648 174-447 (832)
40 KOG2759 Vacuolar H+-ATPase V1 98.7 2.5E-07 5.4E-12 99.6 15.1 193 412-612 161-439 (442)
41 KOG1222 Kinesin associated pro 98.7 6.7E-06 1.5E-10 89.6 25.6 269 369-649 345-659 (791)
42 cd00256 VATPase_H VATPase_H, r 98.7 2.3E-06 5E-11 94.6 22.5 237 407-643 101-416 (429)
43 KOG4500 Rho/Rac GTPase guanine 98.6 4.3E-06 9.4E-11 90.2 19.1 245 393-644 300-563 (604)
44 KOG0161 Myosin class II heavy 98.5 0.00076 1.7E-08 85.7 39.3 207 43-256 986-1205(1930)
45 KOG0161 Myosin class II heavy 98.5 0.00099 2.2E-08 84.7 40.3 263 39-305 1115-1399(1930)
46 PF01602 Adaptin_N: Adaptin N 98.5 4.1E-06 8.8E-11 95.0 17.1 246 370-648 80-328 (526)
47 KOG0996 Structural maintenance 98.3 0.0024 5.3E-08 76.4 36.0 300 168-478 414-720 (1293)
48 KOG4646 Uncharacterized conser 98.3 8.7E-06 1.9E-10 75.8 12.7 130 409-540 18-149 (173)
49 KOG2759 Vacuolar H+-ATPase V1 98.3 4.8E-05 1E-09 82.4 18.6 236 408-644 115-430 (442)
50 TIGR02168 SMC_prok_B chromosom 98.3 0.0043 9.4E-08 77.1 38.5 88 241-329 394-481 (1179)
51 PF01602 Adaptin_N: Adaptin N 98.2 1.9E-05 4.2E-10 89.5 15.6 243 371-645 116-361 (526)
52 PRK02224 chromosome segregatio 98.2 0.014 3.1E-07 71.0 41.2 33 284-316 526-558 (880)
53 TIGR02169 SMC_prok_A chromosom 98.2 0.0051 1.1E-07 76.6 37.7 21 63-83 194-214 (1164)
54 KOG1293 Proteins containing ar 98.2 1.9E-05 4.2E-10 89.1 14.1 202 403-613 321-535 (678)
55 KOG2973 Uncharacterized conser 98.2 5.5E-05 1.2E-09 79.0 16.3 197 409-621 5-214 (353)
56 PRK02224 chromosome segregatio 98.2 0.023 5.1E-07 69.1 41.1 29 325-353 525-553 (880)
57 KOG0946 ER-Golgi vesicle-tethe 98.1 0.00024 5.3E-09 81.7 21.8 267 369-645 22-338 (970)
58 KOG1293 Proteins containing ar 98.1 6.2E-05 1.4E-09 85.1 16.9 143 418-562 388-534 (678)
59 KOG2171 Karyopherin (importin) 98.1 0.00012 2.6E-09 87.3 19.9 187 409-609 350-547 (1075)
60 COG1196 Smc Chromosome segrega 98.1 0.017 3.7E-07 72.5 37.6 23 59-81 192-214 (1163)
61 KOG0946 ER-Golgi vesicle-tethe 98.0 0.00022 4.9E-09 82.0 19.0 215 408-634 23-265 (970)
62 PF05536 Neurochondrin: Neuroc 98.0 0.00045 9.8E-09 79.4 21.8 232 408-645 6-253 (543)
63 TIGR02270 conserved hypothetic 98.0 0.00021 4.5E-09 79.3 18.4 191 409-647 88-290 (410)
64 KOG4674 Uncharacterized conser 98.0 0.013 2.7E-07 74.1 35.0 68 147-214 918-985 (1822)
65 KOG2973 Uncharacterized conser 98.0 0.00053 1.1E-08 71.9 19.3 258 374-646 8-308 (353)
66 PF00038 Filament: Intermediat 97.9 0.037 8.1E-07 59.0 32.9 73 173-245 188-260 (312)
67 KOG0240 Kinesin (SMY1 subfamil 97.9 0.0013 2.8E-08 73.7 21.6 198 54-305 339-541 (607)
68 COG1413 FOG: HEAT repeat [Ener 97.9 0.00074 1.6E-08 72.5 19.1 157 407-613 43-211 (335)
69 TIGR02270 conserved hypothetic 97.9 0.00018 4E-09 79.7 14.5 155 405-611 52-207 (410)
70 COG1196 Smc Chromosome segrega 97.9 0.06 1.3E-06 67.7 38.1 151 109-266 259-409 (1163)
71 PF13646 HEAT_2: HEAT repeats; 97.9 4.9E-05 1.1E-09 64.9 7.4 87 409-516 1-88 (88)
72 PF00038 Filament: Intermediat 97.8 0.019 4.2E-07 61.2 28.6 133 112-250 20-152 (312)
73 PF00514 Arm: Armadillo/beta-c 97.8 2.7E-05 5.9E-10 57.8 4.4 41 437-478 1-41 (41)
74 KOG2171 Karyopherin (importin) 97.8 0.0011 2.4E-08 79.3 19.6 208 423-648 325-541 (1075)
75 PTZ00429 beta-adaptin; Provisi 97.8 0.0018 3.8E-08 76.9 20.7 175 408-608 69-245 (746)
76 PF00514 Arm: Armadillo/beta-c 97.7 6.7E-05 1.4E-09 55.7 5.6 41 521-561 1-41 (41)
77 COG1413 FOG: HEAT repeat [Ener 97.7 0.0013 2.8E-08 70.7 17.7 191 369-613 43-244 (335)
78 PF13646 HEAT_2: HEAT repeats; 97.7 0.00019 4.1E-09 61.3 8.6 86 534-648 1-87 (88)
79 KOG0977 Nuclear envelope prote 97.6 0.11 2.3E-06 59.2 31.4 262 14-299 53-342 (546)
80 PTZ00429 beta-adaptin; Provisi 97.6 0.0039 8.5E-08 74.0 21.0 200 409-633 107-308 (746)
81 PF07888 CALCOCO1: Calcium bin 97.6 0.22 4.8E-06 56.8 35.4 63 242-306 334-403 (546)
82 KOG0964 Structural maintenance 97.6 0.06 1.3E-06 63.9 28.8 229 99-353 254-483 (1200)
83 KOG1517 Guanine nucleotide bin 97.6 0.0013 2.8E-08 77.9 15.5 210 405-614 510-735 (1387)
84 TIGR00606 rad50 rad50. This fa 97.5 0.31 6.7E-06 62.2 37.4 182 88-276 825-1013(1311)
85 KOG4674 Uncharacterized conser 97.5 0.39 8.5E-06 61.3 36.9 132 50-195 788-927 (1822)
86 KOG0996 Structural maintenance 97.5 0.22 4.8E-06 60.4 33.1 283 56-355 263-553 (1293)
87 PF01576 Myosin_tail_1: Myosin 97.5 2E-05 4.3E-10 95.0 0.0 232 44-279 62-310 (859)
88 PF12348 CLASP_N: CLASP N term 97.4 0.0022 4.8E-08 64.9 13.6 185 417-612 17-207 (228)
89 PF07888 CALCOCO1: Calcium bin 97.4 0.15 3.2E-06 58.2 28.2 56 90-149 141-196 (546)
90 PF14664 RICTOR_N: Rapamycin-i 97.4 0.016 3.5E-07 63.6 20.3 226 408-648 26-264 (371)
91 KOG0933 Structural maintenance 97.4 0.6 1.3E-05 56.0 34.7 253 91-374 257-524 (1174)
92 KOG1059 Vesicle coat complex A 97.3 0.003 6.4E-08 72.5 13.9 221 363-611 138-365 (877)
93 PF05536 Neurochondrin: Neuroc 97.3 0.0071 1.5E-07 69.7 17.3 161 400-562 43-214 (543)
94 KOG0977 Nuclear envelope prote 97.3 0.099 2.1E-06 59.6 25.7 156 56-215 52-218 (546)
95 KOG1517 Guanine nucleotide bin 97.3 0.0085 1.8E-07 71.2 17.6 192 409-612 474-672 (1387)
96 KOG4413 26S proteasome regulat 97.3 0.033 7.3E-07 59.1 19.9 277 371-651 84-375 (524)
97 KOG2023 Nuclear transport rece 97.3 0.0041 8.8E-08 70.9 14.0 169 369-542 128-309 (885)
98 PF01576 Myosin_tail_1: Myosin 97.2 7E-05 1.5E-09 90.3 0.0 299 14-316 75-419 (859)
99 KOG1789 Endocytosis protein RM 97.2 0.012 2.6E-07 69.8 17.0 232 393-635 1799-2142(2235)
100 KOG0999 Microtubule-associated 97.2 0.28 6.2E-06 55.1 26.8 156 137-348 99-254 (772)
101 KOG0250 DNA repair protein RAD 97.2 0.03 6.5E-07 67.4 20.7 16 492-508 572-587 (1074)
102 PF14664 RICTOR_N: Rapamycin-i 97.1 0.017 3.7E-07 63.4 17.0 183 437-632 14-197 (371)
103 PRK03918 chromosome segregatio 97.1 1.2 2.7E-05 54.2 41.1 30 238-267 554-583 (880)
104 KOG0250 DNA repair protein RAD 97.1 1.2 2.7E-05 54.1 32.7 13 50-62 208-220 (1074)
105 TIGR00606 rad50 rad50. This fa 97.1 1.7 3.7E-05 55.6 40.0 54 260-314 950-1003(1311)
106 KOG0612 Rho-associated, coiled 97.1 1.4 2.9E-05 54.2 35.0 157 150-314 607-788 (1317)
107 smart00185 ARM Armadillo/beta- 97.1 0.0014 3E-08 47.7 5.4 40 438-478 2-41 (41)
108 KOG2734 Uncharacterized conser 97.0 0.12 2.6E-06 57.0 22.0 230 393-633 111-371 (536)
109 COG5231 VMA13 Vacuolar H+-ATPa 97.0 0.0076 1.6E-07 63.7 12.4 189 415-611 157-428 (432)
110 KOG1789 Endocytosis protein RM 97.0 0.073 1.6E-06 63.5 21.2 111 407-519 1771-1882(2235)
111 COG5369 Uncharacterized conser 97.0 0.0074 1.6E-07 67.4 12.2 162 402-565 426-598 (743)
112 PF09759 Atx10homo_assoc: Spin 96.9 0.0031 6.8E-08 56.5 7.6 66 424-489 3-71 (102)
113 COG5181 HSH155 U2 snRNP splice 96.9 0.0054 1.2E-07 69.3 10.8 226 409-646 606-863 (975)
114 PF10174 Cast: RIM-binding pro 96.9 1.6 3.5E-05 52.3 35.3 131 15-167 278-421 (775)
115 KOG4673 Transcription factor T 96.9 0.75 1.6E-05 53.1 27.3 230 54-332 510-762 (961)
116 PRK03918 chromosome segregatio 96.9 1.8 4E-05 52.8 40.8 14 63-76 310-323 (880)
117 PF10165 Ric8: Guanine nucleot 96.9 0.052 1.1E-06 61.2 18.3 254 393-648 8-332 (446)
118 KOG2734 Uncharacterized conser 96.9 0.11 2.3E-06 57.4 19.6 210 428-648 105-341 (536)
119 PHA02562 46 endonuclease subun 96.9 0.25 5.5E-06 56.9 24.5 58 280-337 336-393 (562)
120 PF10165 Ric8: Guanine nucleot 96.8 0.02 4.3E-07 64.6 14.6 176 469-652 1-217 (446)
121 smart00185 ARM Armadillo/beta- 96.8 0.0026 5.7E-08 46.2 5.2 39 522-560 2-40 (41)
122 PF09726 Macoilin: Transmembra 96.8 0.22 4.8E-06 59.0 23.7 143 120-276 421-581 (697)
123 PF13513 HEAT_EZ: HEAT-like re 96.8 0.0033 7.2E-08 49.3 5.8 55 505-559 1-55 (55)
124 PF00261 Tropomyosin: Tropomyo 96.8 0.83 1.8E-05 47.2 25.4 142 119-271 17-158 (237)
125 PF10174 Cast: RIM-binding pro 96.8 2 4.4E-05 51.5 38.1 240 99-352 468-721 (775)
126 KOG0213 Splicing factor 3b, su 96.8 0.01 2.3E-07 68.3 11.7 228 411-647 803-1059(1172)
127 PF06160 EzrA: Septation ring 96.8 1.2 2.5E-05 51.9 28.9 137 167-319 272-410 (560)
128 KOG1242 Protein containing ada 96.8 0.018 4E-07 65.4 13.6 223 365-611 212-444 (569)
129 KOG1242 Protein containing ada 96.7 0.055 1.2E-06 61.7 17.2 217 404-648 210-439 (569)
130 COG5369 Uncharacterized conser 96.7 0.0099 2.2E-07 66.4 10.7 188 426-620 408-603 (743)
131 PF05701 WEMBL: Weak chloropla 96.7 1.8 3.9E-05 49.9 35.5 46 22-67 32-80 (522)
132 KOG4413 26S proteasome regulat 96.7 0.14 3.1E-06 54.5 18.6 170 414-594 89-267 (524)
133 PF12348 CLASP_N: CLASP N term 96.7 0.017 3.6E-07 58.5 11.5 174 459-648 17-201 (228)
134 PF09759 Atx10homo_assoc: Spin 96.7 0.0078 1.7E-07 54.0 7.8 66 466-531 3-71 (102)
135 PF13513 HEAT_EZ: HEAT-like re 96.7 0.0031 6.8E-08 49.5 4.8 55 421-476 1-55 (55)
136 KOG2023 Nuclear transport rece 96.6 0.027 5.8E-07 64.5 13.2 176 447-633 127-309 (885)
137 KOG4593 Mitotic checkpoint pro 96.6 2.3 4.9E-05 49.6 40.2 145 87-231 146-315 (716)
138 PRK01156 chromosome segregatio 96.6 3.2 6.9E-05 51.0 39.9 16 15-30 303-318 (895)
139 KOG4643 Uncharacterized coiled 96.5 2.2 4.7E-05 51.5 28.6 184 90-305 413-602 (1195)
140 PHA02562 46 endonuclease subun 96.5 0.61 1.3E-05 53.8 24.6 61 90-150 200-260 (562)
141 PF13764 E3_UbLigase_R4: E3 ub 96.5 0.18 4E-06 60.3 20.5 249 403-658 113-414 (802)
142 KOG1241 Karyopherin (importin) 96.5 0.11 2.3E-06 60.6 17.4 164 400-567 353-536 (859)
143 PF04063 DUF383: Domain of unk 96.5 0.032 6.9E-07 55.8 11.6 121 506-635 10-159 (192)
144 PF15070 GOLGA2L5: Putative go 96.4 0.74 1.6E-05 53.9 24.3 194 95-310 7-231 (617)
145 KOG1029 Endocytic adaptor prot 96.4 2.9 6.3E-05 49.1 31.9 157 129-317 421-578 (1118)
146 PF00261 Tropomyosin: Tropomyo 96.4 1.4 3.1E-05 45.4 27.1 151 128-305 78-228 (237)
147 KOG0612 Rho-associated, coiled 96.4 3.9 8.5E-05 50.4 32.9 22 237-258 671-692 (1317)
148 PRK11637 AmiB activator; Provi 96.4 1.3 2.9E-05 49.6 25.5 28 226-253 159-186 (428)
149 PRK14707 hypothetical protein; 96.2 0.15 3.3E-06 64.9 17.8 242 408-658 164-412 (2710)
150 PF04063 DUF383: Domain of unk 96.2 0.036 7.8E-07 55.4 10.5 122 419-541 7-156 (192)
151 KOG1061 Vesicle coat complex A 96.2 0.021 4.5E-07 66.4 9.8 206 408-636 87-293 (734)
152 KOG0804 Cytoplasmic Zn-finger 96.2 0.11 2.4E-06 57.1 14.6 88 157-258 366-453 (493)
153 PRK14707 hypothetical protein; 96.2 0.18 3.9E-06 64.3 18.0 266 366-642 202-477 (2710)
154 PF04849 HAP1_N: HAP1 N-termin 96.2 1.5 3.3E-05 46.8 22.6 138 113-267 163-303 (306)
155 PF12128 DUF3584: Protein of u 96.1 6.4 0.00014 50.1 37.4 99 170-268 740-844 (1201)
156 PF12128 DUF3584: Protein of u 96.1 6.7 0.00015 49.9 36.6 89 258-353 446-534 (1201)
157 KOG0978 E3 ubiquitin ligase in 96.1 4.5 9.8E-05 47.7 31.2 180 123-319 446-625 (698)
158 PF11707 Npa1: Ribosome 60S bi 96.0 0.75 1.6E-05 49.8 20.5 209 442-656 51-306 (330)
159 KOG0212 Uncharacterized conser 96.0 0.1 2.2E-06 59.0 13.8 193 408-615 209-410 (675)
160 PRK04778 septation ring format 96.0 4.3 9.3E-05 47.3 33.0 61 94-154 221-298 (569)
161 KOG3036 Protein involved in ce 96.0 0.4 8.7E-06 49.4 16.9 141 421-562 92-248 (293)
162 PF11698 V-ATPase_H_C: V-ATPas 96.0 0.015 3.4E-07 53.5 6.3 70 491-560 44-114 (119)
163 KOG0976 Rho/Rac1-interacting s 96.0 4.7 0.0001 47.6 33.1 136 65-212 219-362 (1265)
164 PRK04778 septation ring format 96.0 4.7 0.0001 47.1 31.3 160 143-319 254-414 (569)
165 KOG0212 Uncharacterized conser 95.9 0.033 7.1E-07 62.8 9.3 224 406-645 83-313 (675)
166 KOG0971 Microtubule-associated 95.9 2.2 4.7E-05 50.9 24.0 41 64-104 228-277 (1243)
167 KOG1059 Vesicle coat complex A 95.9 0.4 8.7E-06 55.7 17.8 177 409-611 146-328 (877)
168 PF09726 Macoilin: Transmembra 95.9 2.8 6.1E-05 49.9 25.5 101 59-168 417-517 (697)
169 PF11698 V-ATPase_H_C: V-ATPas 95.8 0.02 4.3E-07 52.8 6.1 72 532-611 43-115 (119)
170 KOG2259 Uncharacterized conser 95.8 0.087 1.9E-06 60.4 12.3 215 374-613 203-477 (823)
171 PF09730 BicD: Microtubule-ass 95.8 0.58 1.3E-05 55.3 19.5 157 141-353 30-186 (717)
172 KOG3036 Protein involved in ce 95.8 0.39 8.5E-06 49.5 15.7 155 464-620 94-256 (293)
173 KOG4643 Uncharacterized coiled 95.8 6.5 0.00014 47.6 33.6 243 86-356 279-556 (1195)
174 PRK11637 AmiB activator; Provi 95.8 2.7 5.8E-05 47.2 24.1 47 115-161 45-91 (428)
175 KOG2259 Uncharacterized conser 95.8 0.05 1.1E-06 62.3 10.1 214 412-651 203-473 (823)
176 PRK04863 mukB cell division pr 95.7 9.9 0.00021 49.2 36.3 187 62-250 316-530 (1486)
177 KOG1943 Beta-tubulin folding c 95.7 0.45 9.8E-06 57.5 18.1 225 407-638 341-597 (1133)
178 PRK01156 chromosome segregatio 95.7 7.6 0.00017 47.7 32.9 16 60-75 166-181 (895)
179 PF11841 DUF3361: Domain of un 95.7 0.2 4.3E-06 48.6 12.5 120 441-560 4-130 (160)
180 PF11841 DUF3361: Domain of un 95.6 0.26 5.5E-06 47.8 12.8 118 401-519 5-130 (160)
181 PF08569 Mo25: Mo25-like; Int 95.6 1.2 2.6E-05 48.5 19.5 199 442-653 70-286 (335)
182 COG5096 Vesicle coat complex, 95.5 0.6 1.3E-05 55.4 18.2 135 412-560 60-194 (757)
183 COG5096 Vesicle coat complex, 95.5 0.24 5.1E-06 58.7 15.0 142 369-520 38-195 (757)
184 PF08569 Mo25: Mo25-like; Int 95.5 1.3 2.9E-05 48.1 19.8 225 402-634 71-308 (335)
185 KOG1029 Endocytic adaptor prot 95.5 5.4 0.00012 47.0 25.0 104 143-259 505-621 (1118)
186 PF04078 Rcd1: Cell differenti 95.5 1 2.3E-05 46.9 17.9 200 420-621 8-228 (262)
187 KOG1241 Karyopherin (importin) 95.5 0.51 1.1E-05 55.2 16.8 153 409-562 131-289 (859)
188 PF12755 Vac14_Fab1_bd: Vacuol 95.4 0.088 1.9E-06 46.9 8.6 87 425-517 4-93 (97)
189 PF05004 IFRD: Interferon-rela 95.4 1.1 2.4E-05 48.1 18.7 190 409-610 45-256 (309)
190 KOG4535 HEAT and armadillo rep 95.4 0.024 5.3E-07 62.7 5.9 181 462-648 404-598 (728)
191 KOG0933 Structural maintenance 95.4 9.5 0.00021 46.4 29.1 79 238-316 841-920 (1174)
192 KOG0018 Structural maintenance 95.3 4.7 0.0001 49.1 24.5 165 108-312 723-887 (1141)
193 KOG0213 Splicing factor 3b, su 95.3 0.069 1.5E-06 61.8 9.2 181 407-613 883-1067(1172)
194 KOG2611 Neurochondrin/leucine- 95.3 0.54 1.2E-05 52.5 15.6 100 399-500 48-162 (698)
195 PF11701 UNC45-central: Myosin 95.3 0.11 2.3E-06 50.3 9.3 147 449-609 4-157 (157)
196 KOG2025 Chromosome condensatio 95.2 0.57 1.2E-05 54.5 16.1 116 407-530 85-200 (892)
197 PF06025 DUF913: Domain of Unk 95.2 0.19 4.1E-06 55.5 12.2 134 398-531 96-244 (379)
198 PF12719 Cnd3: Nuclear condens 95.2 0.44 9.5E-06 50.7 14.7 168 450-636 28-210 (298)
199 KOG0567 HEAT repeat-containing 95.2 0.43 9.2E-06 49.7 13.8 204 369-609 36-278 (289)
200 KOG4151 Myosin assembly protei 95.2 0.19 4E-06 59.0 12.3 226 395-633 492-722 (748)
201 KOG0978 E3 ubiquitin ligase in 95.1 9.4 0.0002 45.1 26.4 44 114-157 493-536 (698)
202 KOG1060 Vesicle coat complex A 95.1 1.8 4E-05 51.0 19.8 269 364-654 103-463 (968)
203 PF15070 GOLGA2L5: Putative go 95.0 10 0.00022 44.7 33.1 131 87-231 52-190 (617)
204 PF05911 DUF869: Plant protein 95.0 1.9 4.1E-05 51.7 20.3 178 178-355 22-208 (769)
205 KOG2611 Neurochondrin/leucine- 95.0 0.32 7E-06 54.2 12.8 132 411-542 15-162 (698)
206 PF15619 Lebercilin: Ciliary p 95.0 4.2 9.1E-05 40.8 19.8 92 89-191 16-114 (194)
207 PF12717 Cnd1: non-SMC mitotic 94.9 0.2 4.3E-06 49.2 10.3 91 504-612 1-93 (178)
208 KOG1240 Protein kinase contain 94.9 0.55 1.2E-05 57.4 15.3 193 407-611 462-725 (1431)
209 PF06160 EzrA: Septation ring 94.8 11 0.00023 44.1 32.8 294 12-319 156-475 (560)
210 KOG1062 Vesicle coat complex A 94.8 1.2 2.5E-05 52.7 17.2 197 417-636 117-345 (866)
211 PF05004 IFRD: Interferon-rela 94.8 1.1 2.3E-05 48.3 16.1 149 409-560 88-256 (309)
212 PF12755 Vac14_Fab1_bd: Vacuol 94.8 0.27 5.8E-06 43.8 9.7 62 532-604 27-90 (97)
213 PF05557 MAD: Mitotic checkpoi 94.7 0.0086 1.9E-07 71.4 0.0 209 100-324 168-379 (722)
214 KOG1062 Vesicle coat complex A 94.7 1.5 3.3E-05 51.8 17.7 232 407-646 142-408 (866)
215 KOG1824 TATA-binding protein-i 94.7 0.73 1.6E-05 55.1 15.3 202 409-634 819-1055(1233)
216 PF05622 HOOK: HOOK protein; 94.6 0.0091 2E-07 71.1 0.0 197 107-321 197-410 (713)
217 PRK04863 mukB cell division pr 94.6 21 0.00045 46.4 34.6 44 229-272 438-481 (1486)
218 PF04078 Rcd1: Cell differenti 94.6 0.89 1.9E-05 47.4 14.2 190 462-659 8-227 (262)
219 KOG1240 Protein kinase contain 94.5 0.79 1.7E-05 56.1 15.5 213 409-639 424-672 (1431)
220 PF12717 Cnd1: non-SMC mitotic 94.5 1.8 4E-05 42.4 16.0 91 462-562 1-93 (178)
221 PF14668 RICTOR_V: Rapamycin-i 94.4 0.15 3.3E-06 43.0 6.8 67 466-532 4-70 (73)
222 COG5181 HSH155 U2 snRNP splice 94.4 0.49 1.1E-05 54.2 12.6 101 414-519 653-758 (975)
223 KOG0018 Structural maintenance 94.4 16 0.00034 44.9 25.5 167 181-356 726-903 (1141)
224 KOG1943 Beta-tubulin folding c 94.3 0.88 1.9E-05 55.1 15.3 227 366-609 338-609 (1133)
225 PF08045 CDC14: Cell division 94.3 0.44 9.6E-06 49.7 11.5 81 422-502 106-188 (257)
226 KOG0964 Structural maintenance 94.2 17 0.00038 44.1 28.9 268 170-445 269-565 (1200)
227 KOG0567 HEAT repeat-containing 94.2 1.2 2.6E-05 46.5 14.1 46 581-636 217-264 (289)
228 PF14668 RICTOR_V: Rapamycin-i 94.2 0.18 3.9E-06 42.5 6.8 67 424-490 4-70 (73)
229 KOG0963 Transcription factor/C 94.1 14 0.00031 42.8 31.9 205 106-333 110-341 (629)
230 KOG2062 26S proteasome regulat 94.1 0.31 6.8E-06 56.7 10.5 127 408-551 555-684 (929)
231 PF07926 TPR_MLP1_2: TPR/MLP1/ 94.0 3.6 7.8E-05 38.6 16.1 33 173-205 98-130 (132)
232 PF05483 SCP-1: Synaptonemal c 94.0 16 0.00035 42.8 38.9 102 197-298 590-702 (786)
233 KOG0982 Centrosomal protein Nu 93.9 10 0.00022 42.1 20.8 142 146-356 293-436 (502)
234 PF12718 Tropomyosin_1: Tropom 93.7 3 6.4E-05 39.8 15.1 31 237-267 112-142 (143)
235 KOG4151 Myosin assembly protei 93.7 0.47 1E-05 55.8 11.4 188 437-638 493-685 (748)
236 KOG4653 Uncharacterized conser 93.6 2.2 4.7E-05 50.8 16.4 222 409-648 729-959 (982)
237 TIGR03185 DNA_S_dndD DNA sulfu 93.6 20 0.00043 42.6 32.5 29 244-272 388-416 (650)
238 COG1579 Zn-ribbon protein, pos 93.6 10 0.00022 39.3 19.9 61 69-133 12-75 (239)
239 PF04849 HAP1_N: HAP1 N-termin 93.6 11 0.00025 40.3 20.4 80 271-350 203-282 (306)
240 KOG1061 Vesicle coat complex A 93.5 0.71 1.5E-05 54.2 12.3 141 409-564 51-192 (734)
241 KOG3665 ZYG-1-like serine/thre 93.5 0.43 9.3E-06 56.8 10.9 196 430-651 494-695 (699)
242 PF08324 PUL: PUL domain; Int 93.4 1.4 3.1E-05 45.9 13.5 141 424-564 80-234 (268)
243 PF11701 UNC45-central: Myosin 93.4 0.62 1.3E-05 45.0 10.0 147 491-648 4-154 (157)
244 KOG1077 Vesicle coat complex A 93.4 2.3 5E-05 49.7 15.7 208 407-637 187-418 (938)
245 PRK09039 hypothetical protein; 93.4 4.5 9.8E-05 44.2 17.7 144 169-351 42-186 (343)
246 PF05483 SCP-1: Synaptonemal c 93.3 21 0.00045 41.9 38.6 99 236-337 590-689 (786)
247 PF10212 TTKRSYEDQ: Predicted 93.2 6.9 0.00015 44.6 19.1 90 176-265 416-512 (518)
248 KOG0414 Chromosome condensatio 93.2 0.88 1.9E-05 55.6 12.7 139 408-561 920-1064(1251)
249 COG5240 SEC21 Vesicle coat com 93.2 1.8 4E-05 49.4 14.3 211 408-632 304-578 (898)
250 KOG2032 Uncharacterized conser 93.2 1.2 2.5E-05 50.1 12.7 193 405-612 211-416 (533)
251 PF08324 PUL: PUL domain; Int 93.1 2.3 5E-05 44.2 14.5 171 469-646 83-267 (268)
252 COG5231 VMA13 Vacuolar H+-ATPa 93.1 2.1 4.4E-05 45.9 13.7 188 460-648 160-423 (432)
253 PF05557 MAD: Mitotic checkpoi 93.1 0.027 5.9E-07 67.2 0.0 137 66-215 67-206 (722)
254 KOG0804 Cytoplasmic Zn-finger 93.0 2 4.4E-05 47.6 14.1 119 173-318 332-451 (493)
255 PF06371 Drf_GBD: Diaphanous G 92.8 0.66 1.4E-05 45.3 9.5 80 523-611 98-187 (187)
256 PF06371 Drf_GBD: Diaphanous G 92.8 1.6 3.4E-05 42.6 12.1 80 481-560 98-186 (187)
257 KOG4535 HEAT and armadillo rep 92.7 0.24 5.2E-06 55.1 6.6 151 409-561 435-603 (728)
258 PF10473 CENP-F_leu_zip: Leuci 92.7 9.4 0.0002 36.4 16.6 94 139-232 18-111 (140)
259 PF08045 CDC14: Cell division 92.7 1.8 3.9E-05 45.3 12.7 99 465-563 107-209 (257)
260 COG5215 KAP95 Karyopherin (imp 92.5 2.5 5.3E-05 48.4 14.1 162 403-567 358-535 (858)
261 PF09730 BicD: Microtubule-ass 92.5 8.9 0.00019 45.7 19.4 58 105-162 267-324 (717)
262 KOG1824 TATA-binding protein-i 92.4 3.8 8.3E-05 49.4 16.1 223 407-648 47-281 (1233)
263 KOG0414 Chromosome condensatio 92.3 0.81 1.7E-05 55.9 10.7 131 492-645 921-1056(1251)
264 KOG2062 26S proteasome regulat 92.2 0.98 2.1E-05 52.8 10.9 131 409-560 520-652 (929)
265 COG5218 YCG1 Chromosome conden 92.2 5.5 0.00012 45.8 16.3 115 407-529 91-205 (885)
266 COG5215 KAP95 Karyopherin (imp 92.1 5.5 0.00012 45.7 16.2 207 414-634 101-332 (858)
267 PF02985 HEAT: HEAT repeat; I 92.0 0.25 5.4E-06 34.3 3.8 30 583-612 1-30 (31)
268 PF13764 E3_UbLigase_R4: E3 ub 91.5 6.6 0.00014 47.4 17.2 177 444-636 113-332 (802)
269 PF12460 MMS19_C: RNAPII trans 91.3 11 0.00024 42.1 18.0 184 408-613 190-396 (415)
270 KOG0982 Centrosomal protein Nu 91.3 28 0.00061 38.7 21.5 90 106-195 300-389 (502)
271 PF05667 DUF812: Protein of un 91.2 37 0.0008 39.9 27.7 129 88-242 411-539 (594)
272 KOG2999 Regulator of Rac1, req 91.1 9.6 0.00021 43.7 16.7 152 409-560 85-241 (713)
273 KOG0995 Centromere-associated 91.0 35 0.00075 39.4 30.1 138 91-250 241-381 (581)
274 PF10481 CENP-F_N: Cenp-F N-te 91.0 7.8 0.00017 40.5 14.8 32 281-312 162-193 (307)
275 smart00638 LPD_N Lipoprotein N 90.6 12 0.00025 43.6 18.0 137 491-654 394-547 (574)
276 PF02985 HEAT: HEAT repeat; I 90.6 0.43 9.3E-06 33.1 3.8 28 450-478 2-29 (31)
277 KOG2025 Chromosome condensatio 90.6 6.7 0.00014 46.1 15.3 129 422-558 61-190 (892)
278 KOG0963 Transcription factor/C 90.4 41 0.00089 39.2 28.7 18 6-23 8-25 (629)
279 PF13251 DUF4042: Domain of un 90.4 1.9 4.2E-05 42.8 9.7 138 423-562 2-175 (182)
280 PRK09039 hypothetical protein; 90.3 23 0.00049 38.8 18.8 98 119-216 55-152 (343)
281 PF12460 MMS19_C: RNAPII trans 90.2 7.1 0.00015 43.6 15.3 189 449-648 190-389 (415)
282 TIGR01005 eps_transp_fam exopo 90.2 50 0.0011 39.9 23.6 43 174-216 289-331 (754)
283 KOG2956 CLIP-associating prote 90.1 14 0.0003 41.7 16.7 174 419-610 299-476 (516)
284 PF10481 CENP-F_N: Cenp-F N-te 90.0 22 0.00048 37.3 17.0 151 202-355 19-194 (307)
285 PF05667 DUF812: Protein of un 89.9 23 0.0005 41.6 19.4 92 173-264 321-418 (594)
286 PF05622 HOOK: HOOK protein; 89.9 0.094 2E-06 62.6 0.0 53 214-269 458-510 (713)
287 KOG0999 Microtubule-associated 89.8 43 0.00093 38.5 24.0 115 43-160 44-164 (772)
288 TIGR03007 pepcterm_ChnLen poly 89.7 38 0.00083 38.6 20.9 134 178-315 202-344 (498)
289 COG5116 RPN2 26S proteasome re 89.6 2.3 5E-05 48.6 10.4 123 408-547 552-677 (926)
290 KOG2274 Predicted importin 9 [ 89.6 4.6 9.9E-05 48.5 13.2 183 418-612 502-690 (1005)
291 KOG0915 Uncharacterized conser 89.6 1.2 2.6E-05 55.8 8.8 192 369-565 1081-1310(1702)
292 PF06008 Laminin_I: Laminin Do 89.6 29 0.00064 36.2 26.8 106 192-321 144-249 (264)
293 PF12325 TMF_TATA_bd: TATA ele 89.5 10 0.00022 35.2 13.0 101 168-303 18-118 (120)
294 PF05918 API5: Apoptosis inhib 89.4 4 8.8E-05 47.2 12.6 99 493-611 26-125 (556)
295 TIGR00634 recN DNA repair prot 89.4 49 0.0011 38.6 24.2 86 248-336 295-380 (563)
296 COG1579 Zn-ribbon protein, pos 89.4 29 0.00064 36.0 18.9 53 170-222 14-66 (239)
297 COG4942 Membrane-bound metallo 89.0 43 0.00094 37.5 20.9 33 236-268 90-126 (420)
298 COG5116 RPN2 26S proteasome re 89.0 5.2 0.00011 45.9 12.6 125 489-638 550-677 (926)
299 PF12719 Cnd3: Nuclear condens 89.0 8.6 0.00019 40.9 14.1 186 408-612 27-234 (298)
300 KOG1058 Vesicle coat complex C 88.7 4.7 0.0001 47.6 12.3 134 408-560 135-271 (948)
301 KOG0915 Uncharacterized conser 88.7 15 0.00033 46.6 17.1 150 409-564 1000-1163(1702)
302 KOG1077 Vesicle coat complex A 88.6 16 0.00034 43.2 16.2 153 460-624 321-501 (938)
303 TIGR03007 pepcterm_ChnLen poly 88.5 41 0.0009 38.3 20.1 27 142-168 251-277 (498)
304 PF06025 DUF913: Domain of Unk 88.4 22 0.00048 39.4 17.2 160 426-594 3-208 (379)
305 PF12325 TMF_TATA_bd: TATA ele 88.4 14 0.00031 34.2 13.2 91 113-214 19-109 (120)
306 KOG1060 Vesicle coat complex A 88.4 11 0.00023 44.9 14.9 137 450-612 110-247 (968)
307 PF01347 Vitellogenin_N: Lipop 88.4 6.6 0.00014 45.9 13.9 163 450-647 433-616 (618)
308 PF08581 Tup_N: Tup N-terminal 88.3 5.1 0.00011 34.4 9.4 74 102-192 3-76 (79)
309 COG1340 Uncharacterized archae 88.0 41 0.00088 35.9 25.3 212 141-352 9-257 (294)
310 COG5209 RCD1 Uncharacterized p 87.9 6.6 0.00014 40.3 11.4 146 465-615 116-272 (315)
311 KOG1820 Microtubule-associated 87.8 10 0.00022 46.0 14.9 186 409-610 255-442 (815)
312 PF07926 TPR_MLP1_2: TPR/MLP1/ 87.5 25 0.00054 32.9 16.0 22 117-138 3-24 (132)
313 PF05010 TACC: Transforming ac 87.5 35 0.00077 34.7 22.8 106 196-327 78-186 (207)
314 PF12718 Tropomyosin_1: Tropom 87.5 27 0.00059 33.3 15.5 20 231-250 120-139 (143)
315 KOG1991 Nuclear transport rece 87.4 12 0.00027 45.4 15.0 147 407-556 410-571 (1010)
316 COG2433 Uncharacterized conser 87.4 5.2 0.00011 46.1 11.4 90 99-207 418-508 (652)
317 PF05918 API5: Apoptosis inhib 87.3 5.5 0.00012 46.1 11.8 120 461-607 34-158 (556)
318 PF14073 Cep57_CLD: Centrosome 87.2 33 0.00071 34.0 16.2 88 103-214 4-91 (178)
319 KOG0980 Actin-binding protein 87.1 80 0.0017 38.4 27.0 16 89-104 362-377 (980)
320 KOG1003 Actin filament-coating 87.0 36 0.00077 34.2 19.0 91 144-234 59-149 (205)
321 PRK09169 hypothetical protein; 87.0 25 0.00055 46.6 18.3 150 405-556 161-314 (2316)
322 PF09787 Golgin_A5: Golgin sub 86.9 66 0.0014 37.1 29.6 86 163-255 236-335 (511)
323 COG4942 Membrane-bound metallo 86.5 61 0.0013 36.4 28.4 46 283-328 198-243 (420)
324 PF15066 CAGE1: Cancer-associa 86.5 62 0.0014 36.5 23.9 82 167-248 356-441 (527)
325 COG5209 RCD1 Uncharacterized p 86.4 8 0.00017 39.7 11.0 136 425-561 118-268 (315)
326 KOG4653 Uncharacterized conser 86.1 8.1 0.00017 46.3 12.4 168 460-648 738-913 (982)
327 PF08614 ATG16: Autophagy prot 86.1 4 8.8E-05 40.8 9.0 115 101-215 22-144 (194)
328 PF01347 Vitellogenin_N: Lipop 86.0 14 0.00029 43.3 14.7 173 449-654 396-591 (618)
329 KOG1248 Uncharacterized conser 85.8 35 0.00076 42.5 17.8 182 414-611 704-898 (1176)
330 PF14988 DUF4515: Domain of un 85.8 43 0.00094 34.0 20.8 113 113-256 7-119 (206)
331 KOG0243 Kinesin-like protein [ 85.7 1E+02 0.0022 38.3 23.3 89 121-209 408-512 (1041)
332 KOG2274 Predicted importin 9 [ 85.7 24 0.00052 42.7 16.0 138 418-560 461-601 (1005)
333 KOG2999 Regulator of Rac1, req 85.4 19 0.00042 41.3 14.5 163 450-621 85-254 (713)
334 KOG1078 Vesicle coat complex C 85.3 9.9 0.00021 45.2 12.5 61 537-610 471-531 (865)
335 COG4026 Uncharacterized protei 85.2 4.5 9.9E-05 41.0 8.5 73 53-144 132-204 (290)
336 KOG4360 Uncharacterized coiled 85.1 33 0.00071 39.0 15.9 141 107-309 163-303 (596)
337 PF10168 Nup88: Nuclear pore c 84.9 95 0.0021 37.5 21.0 31 281-311 685-715 (717)
338 TIGR01005 eps_transp_fam exopo 84.8 67 0.0015 38.7 20.1 131 178-313 235-370 (754)
339 KOG2032 Uncharacterized conser 84.7 36 0.00078 38.7 16.1 149 407-560 254-414 (533)
340 KOG1248 Uncharacterized conser 84.6 1.1E+02 0.0025 38.2 21.3 211 417-645 664-890 (1176)
341 PF13851 GAS: Growth-arrest sp 84.5 48 0.001 33.4 20.9 115 91-209 8-129 (201)
342 PF15035 Rootletin: Ciliary ro 84.4 14 0.0003 36.8 11.6 58 180-244 60-117 (182)
343 KOG1949 Uncharacterized conser 84.3 35 0.00075 40.5 16.0 142 451-609 177-329 (1005)
344 PF07814 WAPL: Wings apart-lik 84.1 68 0.0015 35.2 18.2 92 409-500 23-116 (361)
345 KOG1058 Vesicle coat complex C 83.9 39 0.00085 40.3 16.4 59 460-519 271-345 (948)
346 TIGR03185 DNA_S_dndD DNA sulfu 83.6 1E+02 0.0022 36.6 29.9 38 233-270 428-465 (650)
347 PF08317 Spc7: Spc7 kinetochor 83.5 71 0.0015 34.6 23.2 63 254-318 184-246 (325)
348 COG5240 SEC21 Vesicle coat com 83.5 15 0.00033 42.3 12.6 230 410-645 267-547 (898)
349 PF12530 DUF3730: Protein of u 83.4 58 0.0012 33.5 19.5 200 409-638 2-218 (234)
350 KOG1003 Actin filament-coating 82.9 55 0.0012 32.9 19.7 122 90-211 65-203 (205)
351 COG0419 SbcC ATPase involved i 82.8 1.3E+02 0.0029 37.2 40.4 34 240-273 586-619 (908)
352 KOG2137 Protein kinase [Signal 82.7 18 0.0004 42.6 13.3 132 449-595 390-521 (700)
353 KOG1949 Uncharacterized conser 82.2 44 0.00095 39.7 15.8 144 412-560 179-330 (1005)
354 PF14073 Cep57_CLD: Centrosome 82.0 57 0.0012 32.4 17.2 106 242-350 59-168 (178)
355 KOG2933 Uncharacterized conser 82.0 9.5 0.00021 40.8 9.8 143 409-560 90-233 (334)
356 PF08167 RIX1: rRNA processing 82.0 9.8 0.00021 37.0 9.4 108 408-519 26-142 (165)
357 KOG1991 Nuclear transport rece 81.9 73 0.0016 39.2 18.0 96 404-501 459-558 (1010)
358 KOG3665 ZYG-1-like serine/thre 81.8 11 0.00023 45.2 11.4 158 398-555 504-691 (699)
359 PF12031 DUF3518: Domain of un 81.8 3.1 6.6E-05 43.1 6.0 81 464-544 139-228 (257)
360 PF07814 WAPL: Wings apart-lik 81.7 16 0.00035 40.1 12.2 93 450-542 23-116 (361)
361 PF11707 Npa1: Ribosome 60S bi 81.3 76 0.0017 34.3 17.0 161 401-563 51-239 (330)
362 KOG0301 Phospholipase A2-activ 81.3 33 0.00072 40.3 14.5 156 422-593 559-727 (745)
363 KOG0211 Protein phosphatase 2A 81.2 15 0.00032 44.3 12.2 216 402-635 271-491 (759)
364 PF06008 Laminin_I: Laminin Do 81.0 75 0.0016 33.2 23.7 148 111-301 46-194 (264)
365 KOG0211 Protein phosphatase 2A 81.0 31 0.00067 41.6 14.8 213 423-655 214-430 (759)
366 PF10498 IFT57: Intra-flagella 81.0 56 0.0012 36.0 15.8 99 170-300 249-347 (359)
367 PRK10869 recombination and rep 80.9 1.2E+02 0.0026 35.4 26.5 86 248-336 290-375 (553)
368 KOG1967 DNA repair/transcripti 80.6 6.2 0.00014 47.5 8.7 149 407-557 867-1020(1030)
369 PF15619 Lebercilin: Ciliary p 80.3 69 0.0015 32.2 22.3 131 170-312 58-188 (194)
370 COG4477 EzrA Negative regulato 80.0 1.2E+02 0.0026 34.9 26.4 197 94-328 220-422 (570)
371 PF11865 DUF3385: Domain of un 80.0 13 0.00027 36.2 9.4 32 450-481 12-43 (160)
372 PF11559 ADIP: Afadin- and alp 79.9 57 0.0012 31.0 14.0 33 280-312 114-150 (151)
373 PF14662 CCDC155: Coiled-coil 79.5 72 0.0016 32.0 20.9 20 112-131 10-29 (193)
374 KOG1020 Sister chromatid cohes 79.5 29 0.00063 44.3 14.0 111 493-620 819-930 (1692)
375 smart00638 LPD_N Lipoprotein N 79.3 23 0.00051 41.1 13.1 135 449-609 394-543 (574)
376 TIGR00634 recN DNA repair prot 79.0 1.4E+02 0.003 34.9 21.9 66 189-257 334-399 (563)
377 PF08167 RIX1: rRNA processing 78.9 26 0.00057 34.0 11.3 110 450-563 27-145 (165)
378 PRK09169 hypothetical protein; 78.8 1.3E+02 0.0029 40.4 19.9 183 447-639 162-348 (2316)
379 smart00787 Spc7 Spc7 kinetocho 78.7 72 0.0016 34.5 15.5 94 118-214 152-245 (312)
380 PF08702 Fib_alpha: Fibrinogen 78.5 65 0.0014 30.9 13.7 112 231-359 27-140 (146)
381 PF12530 DUF3730: Protein of u 78.4 74 0.0016 32.7 15.0 139 450-613 2-153 (234)
382 PF10212 TTKRSYEDQ: Predicted 77.9 98 0.0021 35.6 16.7 89 238-356 418-506 (518)
383 PF09728 Taxilin: Myosin-like 77.4 1.1E+02 0.0024 33.0 34.7 34 279-312 235-268 (309)
384 COG5098 Chromosome condensatio 77.0 7.8 0.00017 45.5 7.8 141 409-563 894-1039(1128)
385 PF10363 DUF2435: Protein of u 76.9 9.5 0.00021 33.6 6.8 70 493-564 6-75 (92)
386 KOG0976 Rho/Rac1-interacting s 76.4 1.9E+02 0.004 35.1 38.0 125 108-236 185-337 (1265)
387 PF05701 WEMBL: Weak chloropla 76.4 1.6E+02 0.0034 34.2 38.6 144 64-214 169-322 (522)
388 KOG2137 Protein kinase [Signal 76.2 12 0.00026 44.1 9.2 134 404-545 386-521 (700)
389 cd03567 VHS_GGA VHS domain fam 76.0 12 0.00025 35.7 7.6 70 449-519 39-115 (139)
390 PF06120 Phage_HK97_TLTM: Tail 75.4 73 0.0016 34.2 14.2 95 168-272 69-166 (301)
391 KOG0301 Phospholipase A2-activ 75.4 1.1E+02 0.0024 36.2 16.3 172 462-648 557-742 (745)
392 KOG0971 Microtubule-associated 75.3 2.1E+02 0.0045 35.2 44.3 155 90-260 318-478 (1243)
393 PRK11281 hypothetical protein; 75.3 2.4E+02 0.0052 35.9 27.4 41 284-324 288-328 (1113)
394 PF12031 DUF3518: Domain of un 75.2 5.9 0.00013 41.0 5.7 81 421-501 138-227 (257)
395 KOG1850 Myosin-like coiled-coi 75.2 1.3E+02 0.0027 32.6 26.3 48 203-250 245-302 (391)
396 KOG4464 Signaling protein RIC- 74.7 47 0.001 37.1 12.6 153 453-613 50-233 (532)
397 PF04111 APG6: Autophagy prote 74.7 27 0.00058 37.8 11.0 87 170-267 47-133 (314)
398 COG5098 Chromosome condensatio 74.7 17 0.00036 42.9 9.6 130 461-613 908-1039(1128)
399 PF13251 DUF4042: Domain of un 74.5 18 0.00039 36.0 8.9 111 491-612 40-175 (182)
400 COG3096 MukB Uncharacterized p 74.5 2E+02 0.0044 34.6 21.8 129 166-298 352-530 (1480)
401 PF07889 DUF1664: Protein of u 74.2 54 0.0012 30.7 11.3 84 55-156 38-121 (126)
402 PF10473 CENP-F_leu_zip: Leuci 74.0 84 0.0018 30.0 17.3 18 201-218 94-111 (140)
403 PF04012 PspA_IM30: PspA/IM30 73.9 1E+02 0.0023 31.1 21.1 55 115-169 89-143 (221)
404 PF13851 GAS: Growth-arrest sp 73.9 1E+02 0.0023 31.0 22.7 92 238-336 98-191 (201)
405 PF15254 CCDC14: Coiled-coil d 73.7 1.6E+02 0.0035 35.4 17.3 14 219-232 519-532 (861)
406 KOG1832 HIV-1 Vpr-binding prot 73.5 35 0.00076 41.4 12.0 184 449-645 350-569 (1516)
407 COG0419 SbcC ATPase involved i 73.1 2.4E+02 0.0053 34.9 40.8 16 14-29 200-215 (908)
408 cd03569 VHS_Hrs_Vps27p VHS dom 72.6 12 0.00026 35.6 6.9 70 449-519 42-113 (142)
409 KOG1078 Vesicle coat complex C 72.6 1.4E+02 0.0031 36.0 16.5 65 409-479 247-312 (865)
410 PF12830 Nipped-B_C: Sister ch 72.3 1.1E+02 0.0023 30.4 14.2 63 407-478 8-74 (187)
411 PF06685 DUF1186: Protein of u 72.3 89 0.0019 32.7 13.7 100 449-564 32-145 (249)
412 cd03568 VHS_STAM VHS domain fa 72.3 13 0.00027 35.6 7.0 70 449-519 38-109 (144)
413 KOG2956 CLIP-associating prote 71.9 63 0.0014 36.6 13.0 142 410-560 332-476 (516)
414 PF14662 CCDC155: Coiled-coil 71.1 1.2E+02 0.0026 30.5 21.0 78 105-186 24-108 (193)
415 COG5185 HEC1 Protein involved 71.0 1.9E+02 0.0042 32.9 21.1 66 290-355 370-435 (622)
416 KOG1967 DNA repair/transcripti 70.6 30 0.00066 42.0 10.8 150 448-608 867-1021(1030)
417 PF04156 IncA: IncA protein; 70.4 1.1E+02 0.0025 30.0 14.1 45 170-214 134-178 (191)
418 KOG2008 BTK-associated SH3-dom 70.4 80 0.0017 33.9 12.7 79 226-304 60-143 (426)
419 PF15397 DUF4618: Domain of un 70.1 1.5E+02 0.0032 31.2 24.1 94 103-206 6-107 (258)
420 PF09304 Cortex-I_coil: Cortex 70.0 87 0.0019 28.5 12.3 27 175-201 60-86 (107)
421 KOG2933 Uncharacterized conser 69.9 29 0.00064 37.3 9.6 104 491-610 130-233 (334)
422 KOG1566 Conserved protein Mo25 69.9 1.7E+02 0.0037 31.8 19.7 206 402-613 74-288 (342)
423 PF06785 UPF0242: Uncharacteri 69.8 94 0.002 33.7 13.1 75 173-250 134-211 (401)
424 PF07106 TBPIP: Tat binding pr 69.3 54 0.0012 31.9 10.9 62 173-250 72-133 (169)
425 PF05911 DUF869: Plant protein 69.3 2.7E+02 0.0059 33.9 23.5 82 167-259 618-699 (769)
426 PF10168 Nup88: Nuclear pore c 69.1 2.7E+02 0.0058 33.7 19.9 39 100-138 590-628 (717)
427 TIGR01843 type_I_hlyD type I s 68.8 1.8E+02 0.004 31.8 20.1 73 237-312 155-227 (423)
428 PF02841 GBP_C: Guanylate-bind 68.7 1.7E+02 0.0036 31.2 23.8 71 170-254 187-257 (297)
429 PF10363 DUF2435: Protein of u 68.4 18 0.00039 31.9 6.5 67 451-520 6-72 (92)
430 PF14666 RICTOR_M: Rapamycin-i 68.1 1.4E+02 0.003 30.8 13.9 128 463-610 78-224 (226)
431 KOG1566 Conserved protein Mo25 68.0 1.9E+02 0.004 31.5 18.6 185 442-638 73-272 (342)
432 PF04111 APG6: Autophagy prote 67.4 52 0.0011 35.6 11.2 18 197-214 116-133 (314)
433 TIGR03017 EpsF chain length de 67.3 2.1E+02 0.0046 31.9 22.1 41 175-215 256-296 (444)
434 KOG0995 Centromere-associated 67.1 2.5E+02 0.0055 32.7 34.2 29 108-136 299-327 (581)
435 PF06705 SF-assemblin: SF-asse 67.0 1.6E+02 0.0035 30.4 30.6 112 169-305 117-228 (247)
436 cd03561 VHS VHS domain family; 66.6 24 0.00052 33.0 7.5 70 449-519 38-111 (133)
437 smart00288 VHS Domain present 66.3 20 0.00043 33.6 6.8 70 449-519 38-110 (133)
438 PF08172 CASP_C: CASP C termin 66.2 45 0.00097 34.9 10.0 33 64-100 3-35 (248)
439 PF09744 Jnk-SapK_ap_N: JNK_SA 66.1 1.1E+02 0.0024 29.8 12.0 43 87-129 73-115 (158)
440 KOG1020 Sister chromatid cohes 66.1 1.5E+02 0.0032 38.4 15.6 105 449-564 817-924 (1692)
441 KOG0413 Uncharacterized conser 66.1 32 0.0007 42.0 9.7 116 506-645 946-1065(1529)
442 PF06428 Sec2p: GDP/GTP exchan 66.0 18 0.00039 32.5 6.1 80 188-273 2-84 (100)
443 PF15066 CAGE1: Cancer-associa 66.0 2.4E+02 0.0052 32.1 21.5 166 44-232 340-516 (527)
444 PRK10929 putative mechanosensi 66.0 3.7E+02 0.0081 34.2 37.8 123 143-267 185-313 (1109)
445 PF04012 PspA_IM30: PspA/IM30 65.4 1.6E+02 0.0034 29.7 17.2 44 171-214 89-132 (221)
446 PF14988 DUF4515: Domain of un 64.3 1.7E+02 0.0037 29.7 22.0 120 101-232 45-173 (206)
447 TIGR01010 BexC_CtrB_KpsE polys 64.3 2.2E+02 0.0048 31.0 18.0 113 195-316 171-285 (362)
448 KOG1243 Protein kinase [Genera 64.0 35 0.00075 40.3 9.4 171 445-635 327-498 (690)
449 TIGR01843 type_I_hlyD type I s 63.8 2.3E+02 0.005 31.0 20.9 9 68-76 89-97 (423)
450 COG5218 YCG1 Chromosome conden 63.8 1E+02 0.0022 36.1 12.7 115 520-649 81-195 (885)
451 PF06685 DUF1186: Protein of u 63.7 1.9E+02 0.0042 30.2 14.3 110 408-540 32-161 (249)
452 PF02994 Transposase_22: L1 tr 63.6 15 0.00033 40.5 6.4 26 109-134 90-115 (370)
453 PF12231 Rif1_N: Rap1-interact 63.4 1.1E+02 0.0023 33.9 12.9 174 419-609 5-202 (372)
454 KOG1850 Myosin-like coiled-coi 63.4 2.2E+02 0.0048 30.8 32.0 151 147-310 111-272 (391)
455 PRK10884 SH3 domain-containing 62.4 60 0.0013 33.0 9.9 39 281-319 118-156 (206)
456 KOG1243 Protein kinase [Genera 62.2 22 0.00048 41.9 7.4 186 404-609 327-513 (690)
457 PF08581 Tup_N: Tup N-terminal 62.0 77 0.0017 27.3 8.9 17 234-250 58-74 (79)
458 KOG4438 Centromere-associated 61.7 2.8E+02 0.006 31.3 21.2 175 167-350 139-313 (446)
459 PF11865 DUF3385: Domain of un 61.3 53 0.0011 31.8 8.9 30 409-438 12-42 (160)
460 PF02183 HALZ: Homeobox associ 61.2 23 0.00051 27.1 5.1 41 90-134 3-43 (45)
461 PF06705 SF-assemblin: SF-asse 61.1 2.1E+02 0.0045 29.6 25.2 105 144-258 11-117 (247)
462 cd07655 F-BAR_PACSIN The F-BAR 60.9 2.2E+02 0.0047 29.8 25.4 99 168-275 132-236 (258)
463 PF09787 Golgin_A5: Golgin sub 60.9 3.1E+02 0.0068 31.6 22.0 26 222-247 235-260 (511)
464 PF15188 CCDC-167: Coiled-coil 60.8 34 0.00073 29.9 6.6 56 171-226 3-68 (85)
465 KOG4657 Uncharacterized conser 60.7 2.1E+02 0.0045 29.5 14.2 82 171-252 63-144 (246)
466 PF15372 DUF4600: Domain of un 60.5 1.5E+02 0.0033 27.9 11.2 32 107-138 5-36 (129)
467 PF08216 CTNNBL: Catenin-beta- 60.3 9.2 0.0002 34.8 3.2 42 509-550 64-105 (108)
468 PF10146 zf-C4H2: Zinc finger- 59.7 1.2E+02 0.0027 31.3 11.7 39 171-209 65-103 (230)
469 cd03569 VHS_Hrs_Vps27p VHS dom 59.4 34 0.00073 32.5 7.1 71 408-478 42-114 (142)
470 cd03561 VHS VHS domain family; 59.1 42 0.00092 31.3 7.7 71 408-478 38-112 (133)
471 PF08317 Spc7: Spc7 kinetochor 59.0 2.6E+02 0.0057 30.2 21.6 49 283-331 218-266 (325)
472 PF12711 Kinesin-relat_1: Kine 58.7 47 0.001 29.1 7.1 65 114-209 21-85 (86)
473 COG2433 Uncharacterized conser 58.7 1E+02 0.0022 36.0 11.8 84 169-267 425-508 (652)
474 PF08614 ATG16: Autophagy prot 58.6 97 0.0021 30.9 10.6 109 121-229 71-179 (194)
475 PF15294 Leu_zip: Leucine zipp 58.5 2.5E+02 0.0055 29.9 24.9 46 170-215 129-174 (278)
476 KOG1822 Uncharacterized conser 58.2 1.2E+02 0.0025 40.1 13.1 29 491-519 959-987 (2067)
477 PF06005 DUF904: Protein of un 58.2 87 0.0019 26.4 8.5 50 165-214 10-59 (72)
478 PF08826 DMPK_coil: DMPK coile 57.6 66 0.0014 26.3 7.4 51 71-133 5-55 (61)
479 cd03568 VHS_STAM VHS domain fa 57.2 38 0.00083 32.3 7.1 71 408-478 38-110 (144)
480 PF08647 BRE1: BRE1 E3 ubiquit 57.0 1.4E+02 0.003 26.4 10.6 27 223-249 70-96 (96)
481 PF14225 MOR2-PAG1_C: Cell mor 56.7 2.6E+02 0.0057 29.4 18.5 150 465-638 78-243 (262)
482 PRK10698 phage shock protein P 56.7 1.7E+02 0.0037 30.0 12.2 101 169-272 27-131 (222)
483 PF14500 MMS19_N: Dos2-interac 56.0 2.7E+02 0.0058 29.3 16.0 190 414-611 6-237 (262)
484 COG5656 SXM1 Importin, protein 56.0 75 0.0016 38.0 10.2 159 490-660 408-576 (970)
485 PF10267 Tmemb_cc2: Predicted 55.5 2E+02 0.0043 32.2 13.2 73 178-260 242-318 (395)
486 PF08826 DMPK_coil: DMPK coile 55.4 1.2E+02 0.0025 24.9 8.5 30 285-314 1-30 (61)
487 PRK11281 hypothetical protein; 55.2 5.6E+02 0.012 32.8 24.1 13 179-191 169-181 (1113)
488 KOG1832 HIV-1 Vpr-binding prot 55.1 52 0.0011 40.0 8.9 160 468-634 328-491 (1516)
489 PF09731 Mitofilin: Mitochondr 55.0 4E+02 0.0087 31.1 22.2 86 12-106 246-332 (582)
490 KOG0994 Extracellular matrix g 55.0 5.6E+02 0.012 32.7 30.1 82 255-336 1613-1698(1758)
491 PF06637 PV-1: PV-1 protein (P 55.0 1.9E+02 0.004 32.1 12.3 95 16-139 284-378 (442)
492 KOG1820 Microtubule-associated 54.9 1.2E+02 0.0027 37.0 12.3 137 418-563 306-445 (815)
493 KOG1788 Uncharacterized conser 54.9 2.1E+02 0.0044 36.0 13.5 229 397-633 674-960 (2799)
494 smart00787 Spc7 Spc7 kinetocho 54.5 3.1E+02 0.0068 29.7 18.1 81 125-215 205-285 (312)
495 KOG4302 Microtubule-associated 54.2 4.5E+02 0.0098 31.4 20.6 202 96-328 47-273 (660)
496 PRK10884 SH3 domain-containing 53.8 1.1E+02 0.0023 31.2 9.9 23 110-132 93-115 (206)
497 PF00769 ERM: Ezrin/radixin/mo 53.7 2.8E+02 0.0061 28.9 15.7 35 115-149 52-86 (246)
498 PF15294 Leu_zip: Leucine zipp 53.7 3E+02 0.0066 29.3 19.9 198 39-250 42-277 (278)
499 KOG4593 Mitotic checkpoint pro 53.5 4.6E+02 0.01 31.4 30.7 255 15-334 60-317 (716)
500 PF10226 DUF2216: Uncharacteri 53.1 2.5E+02 0.0055 28.2 12.1 128 87-294 15-145 (195)
No 1
>KOG0166 consensus Karyopherin (importin) alpha [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.92 E-value=2.8e-23 Score=228.24 Aligned_cols=275 Identities=17% Similarity=0.216 Sum_probs=231.9
Q ss_pred cccchhhhhhcccC-CCccccccchhhh---hhcCchhH-HHHHhCCCHHHHHHhhCCCCHHHHHHHHHHHHHhhC-Cch
Q 006114 366 YTKDYISKGSSRFG-APMSLQKSNPSRE---LSGQRATI-AKICDEVGLPKILQLLTSEDPDVQIHAVKVVANLAA-EDI 439 (660)
Q Consensus 366 ~~~g~i~~l~~~L~-~~~~~vr~~~~~~---laa~~~~~-~~I~e~ggI~~LV~LL~s~d~~vr~~Aa~aL~nLa~-~~e 439 (660)
...|.++.++.++. +..+.++-.++|+ ++..++.. ..+++.|++|.++.++.+++..|+..|+|+|+|++. .+.
T Consensus 106 i~~G~v~~lV~~l~~~~~~~lq~eAAWaLTnIAsgtse~T~~vv~agavp~fi~Ll~s~~~~v~eQavWALgNIagds~~ 185 (514)
T KOG0166|consen 106 IQSGVVPRLVEFLSRDDNPTLQFEAAWALTNIASGTSEQTKVVVDAGAVPIFIQLLSSPSADVREQAVWALGNIAGDSPD 185 (514)
T ss_pred HHcCcHHHHHHHHccCCChhHHHHHHHHHHHHhcCchhhccccccCCchHHHHHHhcCCcHHHHHHHHHHHhccccCChH
Confidence 34488999999996 4556777777887 55555544 457799999999999999999999999999999999 577
Q ss_pred hHHHHHHcCCHHHHHHHHccCCCHHHHHHHHHHHHHhhcCchhHHHHH-hcCccHHHHHhhcCCCCHHHHHHHHHHHHHH
Q 006114 440 NQEKIVEEGGLDALLLLLRTSQNTTILRVASGAIANLAMNEMNQGLIM-SRGGGQLLAKTASKTDDPQTLRMVAGALANL 518 (660)
Q Consensus 440 n~~~Ive~GgI~~Lv~LL~~s~d~~v~~~Aa~AL~nLA~~~~n~~~Iv-e~g~I~~Ll~LL~~s~d~~v~~~Aa~aLanL 518 (660)
.|..+.++|++++|+.++..+......++++|+|.|||.+......+. -..++|.|..++. +.|+.|+..|||||++|
T Consensus 186 ~Rd~vl~~g~l~pLl~~l~~~~~~~~lRn~tW~LsNlcrgk~P~P~~~~v~~iLp~L~~ll~-~~D~~Vl~Da~WAlsyL 264 (514)
T KOG0166|consen 186 CRDYVLSCGALDPLLRLLNKSDKLSMLRNATWTLSNLCRGKNPSPPFDVVAPILPALLRLLH-STDEEVLTDACWALSYL 264 (514)
T ss_pred HHHHHHhhcchHHHHHHhccccchHHHHHHHHHHHHHHcCCCCCCcHHHHHHHHHHHHHHHh-cCCHHHHHHHHHHHHHH
Confidence 789999999999999999854444788999999999999853333333 3568899999996 48999999999999999
Q ss_pred h-cChhHHHHHHhccHHHHHHHHhcCCCHHHHHHHHHHHHHhhccchhhhhhcchhhhHHHhhcChHHHHHHhhc-CCCH
Q 006114 519 C-GNEKLHTMLEEDGAIKALLAMVRSGNIDVIAQVARGLANFAKCESRAIVQGQRKGRSHLMEDSALEWLIANSK-TNSA 596 (660)
Q Consensus 519 a-~~~~~r~~iv~~G~V~~Lv~lL~s~~~~v~~~Al~aLanLA~~~~~~~aq~~~e~r~~Li~~G~v~~Lv~lL~-s~d~ 596 (660)
+ +.++.-+.+++.|++|.|+.+|.++.+.++.+|+++++|++.++. .....+++.|++|.|..++. +..+
T Consensus 265 sdg~ne~iq~vi~~gvv~~LV~lL~~~~~~v~~PaLRaiGNIvtG~d--------~QTq~vi~~~~L~~l~~ll~~s~~~ 336 (514)
T KOG0166|consen 265 TDGSNEKIQMVIDAGVVPRLVDLLGHSSPKVVTPALRAIGNIVTGSD--------EQTQVVINSGALPVLSNLLSSSPKE 336 (514)
T ss_pred hcCChHHHHHHHHccchHHHHHHHcCCCcccccHHHhhccceeeccH--------HHHHHHHhcChHHHHHHHhccCcch
Confidence 9 778888889999999999999999999999999999999998753 45667999999999999998 5567
Q ss_pred HHHHHHHHHHHHhhcCC-ccHHHHHhcCcHHHHHHHHhcCChHHHHHHHHHHHhc
Q 006114 597 STRRHVELALCHLAQNE-DNARDFISRGGAKELVQISIESSREDIRNLAKKTMKS 650 (660)
Q Consensus 597 ~vr~~Aa~AL~nLa~~~-e~~~~Ive~G~l~~Lv~lL~s~s~~~ir~~A~~~L~~ 650 (660)
.++..|||++.|++.+. .....++.+|.+|.|+.++.+++ -++|.-|..++.+
T Consensus 337 ~ikkEAcW~iSNItAG~~~qiqaVida~l~p~Li~~l~~~e-f~~rKEAawaIsN 390 (514)
T KOG0166|consen 337 SIKKEACWTISNITAGNQEQIQAVIDANLIPVLINLLQTAE-FDIRKEAAWAISN 390 (514)
T ss_pred hHHHHHHHHHHHhhcCCHHHHHHHHHcccHHHHHHHHhccc-hHHHHHHHHHHHh
Confidence 79999999999998766 78899999999999999999877 4555555555543
No 2
>PLN03200 cellulose synthase-interactive protein; Provisional
Probab=99.91 E-value=2e-22 Score=248.67 Aligned_cols=279 Identities=17% Similarity=0.192 Sum_probs=225.3
Q ss_pred chhhhhhcccCCCccccccchhhh---hhcC-chhHHHHHhCCCHHHHHHhhCCCCHHHHHHHHHHHHHhhC-CchhHHH
Q 006114 369 DYISKGSSRFGAPMSLQKSNPSRE---LSGQ-RATIAKICDEVGLPKILQLLTSEDPDVQIHAVKVVANLAA-EDINQEK 443 (660)
Q Consensus 369 g~i~~l~~~L~~~~~~vr~~~~~~---laa~-~~~~~~I~e~ggI~~LV~LL~s~d~~vr~~Aa~aL~nLa~-~~en~~~ 443 (660)
+++..+++.+......++....++ ++.+ ...+..|+..||+|.|+.+|.+++..+|..|+++|++|+. +++++..
T Consensus 404 daik~LV~LL~~~~~evQ~~Av~aL~~L~~~~~e~~~aIi~~ggIp~LV~LL~s~s~~iQ~~A~~~L~nLa~~ndenr~a 483 (2102)
T PLN03200 404 EAKKVLVGLITMATADVQEELIRALSSLCCGKGGLWEALGGREGVQLLISLLGLSSEQQQEYAVALLAILTDEVDESKWA 483 (2102)
T ss_pred cchhhhhhhhccCCHHHHHHHHHHHHHHhCCCHHHHHHHHHcCcHHHHHHHHcCCCHHHHHHHHHHHHHHHcCCHHHHHH
Confidence 344555555555555566665555 4544 5667788899999999999999999999999999999998 6788999
Q ss_pred HHHcCCHHHHHHHHccCCCHHHHHHHHHHHHHhhcCchh-HHHHHhcCccHHHHHhhcCCCCHHHHHHHHHHHHHHhcCh
Q 006114 444 IVEEGGLDALLLLLRTSQNTTILRVASGAIANLAMNEMN-QGLIMSRGGGQLLAKTASKTDDPQTLRMVAGALANLCGNE 522 (660)
Q Consensus 444 Ive~GgI~~Lv~LL~~s~d~~v~~~Aa~AL~nLA~~~~n-~~~Ive~g~I~~Ll~LL~~s~d~~v~~~Aa~aLanLa~~~ 522 (660)
|+++||||+|+.+|. ++++.++..|+|+|+||+.++++ +..|...|+||+|+.+|.+ +++.++..|+|+|+||+.+.
T Consensus 484 IieaGaIP~LV~LL~-s~~~~iqeeAawAL~NLa~~~~qir~iV~~aGAIppLV~LL~s-gd~~~q~~Aa~AL~nLi~~~ 561 (2102)
T PLN03200 484 ITAAGGIPPLVQLLE-TGSQKAKEDSATVLWNLCCHSEDIRACVESAGAVPALLWLLKN-GGPKGQEIAAKTLTKLVRTA 561 (2102)
T ss_pred HHHCCCHHHHHHHHc-CCCHHHHHHHHHHHHHHhCCcHHHHHHHHHCCCHHHHHHHHhC-CCHHHHHHHHHHHHHHHhcc
Confidence 999999999999998 77999999999999999998655 4555578999999999975 78999999999999996221
Q ss_pred hHH--------------------------------------HHHHhccHHHHHHHHhcCCCHHHHHHHHHHHHHhhccch
Q 006114 523 KLH--------------------------------------TMLEEDGAIKALLAMVRSGNIDVIAQVARGLANFAKCES 564 (660)
Q Consensus 523 ~~r--------------------------------------~~iv~~G~V~~Lv~lL~s~~~~v~~~Al~aLanLA~~~~ 564 (660)
+.. ......||++.|+.++.++++.++..|+++|++++.++
T Consensus 562 d~~~I~~Lv~LLlsdd~~~~~~aL~vLgnIlsl~~~~d~~~~g~~~~ggL~~Lv~LL~sgs~~ikk~Aa~iLsnL~a~~- 640 (2102)
T PLN03200 562 DAATISQLTALLLGDLPESKVHVLDVLGHVLSVASLEDLVREGSAANDALRTLIQLLSSSKEETQEKAASVLADIFSSR- 640 (2102)
T ss_pred chhHHHHHHHHhcCCChhHHHHHHHHHHHHHhhcchhHHHHHhhhccccHHHHHHHHcCCCHHHHHHHHHHHHHHhcCC-
Confidence 110 01124689999999999999999999999999999865
Q ss_pred hhhhhcchhhhHHHhhcChHHHHHHhhcCCCHHHHHHHHHHHHHhhcC--CccHHHHHhcCcHHHHHHHHhcCChHHHHH
Q 006114 565 RAIVQGQRKGRSHLMEDSALEWLIANSKTNSASTRRHVELALCHLAQN--EDNARDFISRGGAKELVQISIESSREDIRN 642 (660)
Q Consensus 565 ~~~aq~~~e~r~~Li~~G~v~~Lv~lL~s~d~~vr~~Aa~AL~nLa~~--~e~~~~Ive~G~l~~Lv~lL~s~s~~~ir~ 642 (660)
+..+..++..|++|+++.++.+.+..+++.|+|+|.+++.+ ..+...+++.|++++|+.++.+.+. .+..
T Consensus 641 -------~d~~~avv~agaIpPLV~LLss~~~~v~keAA~AL~nL~~~~~~~q~~~~v~~GaV~pL~~LL~~~d~-~v~e 712 (2102)
T PLN03200 641 -------QDLCESLATDEIINPCIKLLTNNTEAVATQSARALAALSRSIKENRKVSYAAEDAIKPLIKLAKSSSI-EVAE 712 (2102)
T ss_pred -------hHHHHHHHHcCCHHHHHHHHhcCChHHHHHHHHHHHHHHhCCCHHHHHHHHHcCCHHHHHHHHhCCCh-HHHH
Confidence 34566799999999999999999999999999999999853 3556778999999999999987655 4444
Q ss_pred HHHHH---HhcCcchhhhh
Q 006114 643 LAKKT---MKSNPRLQADT 658 (660)
Q Consensus 643 ~A~~~---L~~~p~~~~e~ 658 (660)
.|..+ +-.+|..+.++
T Consensus 713 ~Al~ALanLl~~~e~~~ei 731 (2102)
T PLN03200 713 QAVCALANLLSDPEVAAEA 731 (2102)
T ss_pred HHHHHHHHHHcCchHHHHH
Confidence 44444 34555555544
No 3
>PLN03200 cellulose synthase-interactive protein; Provisional
Probab=99.90 E-value=2.4e-22 Score=247.95 Aligned_cols=273 Identities=19% Similarity=0.215 Sum_probs=234.2
Q ss_pred cccchhhhhhcccCCCccccccchhhh---hhc-CchhHHHHHhCCCHHHHHHhhCCCCHHHHHHHHHHHHHhhCCchhH
Q 006114 366 YTKDYISKGSSRFGAPMSLQKSNPSRE---LSG-QRATIAKICDEVGLPKILQLLTSEDPDVQIHAVKVVANLAAEDINQ 441 (660)
Q Consensus 366 ~~~g~i~~l~~~L~~~~~~vr~~~~~~---laa-~~~~~~~I~e~ggI~~LV~LL~s~d~~vr~~Aa~aL~nLa~~~en~ 441 (660)
.+.|+++.++..|.+.....+..+.+. ++. .+.+...|++.|+||.|+.+|.+++..++..|+|+|+||+.++.+.
T Consensus 443 i~~ggIp~LV~LL~s~s~~iQ~~A~~~L~nLa~~ndenr~aIieaGaIP~LV~LL~s~~~~iqeeAawAL~NLa~~~~qi 522 (2102)
T PLN03200 443 GGREGVQLLISLLGLSSEQQQEYAVALLAILTDEVDESKWAITAAGGIPPLVQLLETGSQKAKEDSATVLWNLCCHSEDI 522 (2102)
T ss_pred HHcCcHHHHHHHHcCCCHHHHHHHHHHHHHHHcCCHHHHHHHHHCCCHHHHHHHHcCCCHHHHHHHHHHHHHHhCCcHHH
Confidence 456899999999998877777776665 554 4456778999999999999999999999999999999999976665
Q ss_pred HH-HHHcCCHHHHHHHHccCCCHHHHHHHHHHHHHhhcCchhH-------------------------------------
Q 006114 442 EK-IVEEGGLDALLLLLRTSQNTTILRVASGAIANLAMNEMNQ------------------------------------- 483 (660)
Q Consensus 442 ~~-Ive~GgI~~Lv~LL~~s~d~~v~~~Aa~AL~nLA~~~~n~------------------------------------- 483 (660)
.. |...|+||+|+.+|. +.++.++..|+++|.+|+.+.++.
T Consensus 523 r~iV~~aGAIppLV~LL~-sgd~~~q~~Aa~AL~nLi~~~d~~~I~~Lv~LLlsdd~~~~~~aL~vLgnIlsl~~~~d~~ 601 (2102)
T PLN03200 523 RACVESAGAVPALLWLLK-NGGPKGQEIAAKTLTKLVRTADAATISQLTALLLGDLPESKVHVLDVLGHVLSVASLEDLV 601 (2102)
T ss_pred HHHHHHCCCHHHHHHHHh-CCCHHHHHHHHHHHHHHHhccchhHHHHHHHHhcCCChhHHHHHHHHHHHHHhhcchhHHH
Confidence 55 557899999999998 568999999999999996432110
Q ss_pred HH-HHhcCccHHHHHhhcCCCCHHHHHHHHHHHHHHh-cChhHHHHHHhccHHHHHHHHhcCCCHHHHHHHHHHHHHhhc
Q 006114 484 GL-IMSRGGGQLLAKTASKTDDPQTLRMVAGALANLC-GNEKLHTMLEEDGAIKALLAMVRSGNIDVIAQVARGLANFAK 561 (660)
Q Consensus 484 ~~-Ive~g~I~~Ll~LL~~s~d~~v~~~Aa~aLanLa-~~~~~r~~iv~~G~V~~Lv~lL~s~~~~v~~~Al~aLanLA~ 561 (660)
.. +...|+++.|+.++.+ +++.++..|+|+|.+++ .+++.+..++..|+||+|+.++.+.+.+++..|+++|+|++.
T Consensus 602 ~~g~~~~ggL~~Lv~LL~s-gs~~ikk~Aa~iLsnL~a~~~d~~~avv~agaIpPLV~LLss~~~~v~keAA~AL~nL~~ 680 (2102)
T PLN03200 602 REGSAANDALRTLIQLLSS-SKEETQEKAASVLADIFSSRQDLCESLATDEIINPCIKLLTNNTEAVATQSARALAALSR 680 (2102)
T ss_pred HHhhhccccHHHHHHHHcC-CCHHHHHHHHHHHHHHhcCChHHHHHHHHcCCHHHHHHHHhcCChHHHHHHHHHHHHHHh
Confidence 11 1136899999999975 78999999999999998 677888999999999999999999999999999999999996
Q ss_pred cchhhhhhcchhhhHHHhhcChHHHHHHhhcCCCHHHHHHHHHHHHHhhcCCccHHHHHhcCcHHHHHHHHhcCChHHHH
Q 006114 562 CESRAIVQGQRKGRSHLMEDSALEWLIANSKTNSASTRRHVELALCHLAQNEDNARDFISRGGAKELVQISIESSREDIR 641 (660)
Q Consensus 562 ~~~~~~aq~~~e~r~~Li~~G~v~~Lv~lL~s~d~~vr~~Aa~AL~nLa~~~e~~~~Ive~G~l~~Lv~lL~s~s~~~ir 641 (660)
+. ....+..++..|++|+|+.++.+.+..+...|+.+|.+|+.+++.+..+...|++++|+++++++++...+
T Consensus 681 ~~-------~~~q~~~~v~~GaV~pL~~LL~~~d~~v~e~Al~ALanLl~~~e~~~ei~~~~~I~~Lv~lLr~G~~~~k~ 753 (2102)
T PLN03200 681 SI-------KENRKVSYAAEDAIKPLIKLAKSSSIEVAEQAVCALANLLSDPEVAAEALAEDIILPLTRVLREGTLEGKR 753 (2102)
T ss_pred CC-------CHHHHHHHHHcCCHHHHHHHHhCCChHHHHHHHHHHHHHHcCchHHHHHHhcCcHHHHHHHHHhCChHHHH
Confidence 52 23456678899999999999999999999999999999999999999999999999999999999887777
Q ss_pred HHHHHH
Q 006114 642 NLAKKT 647 (660)
Q Consensus 642 ~~A~~~ 647 (660)
++|.-+
T Consensus 754 ~Aa~AL 759 (2102)
T PLN03200 754 NAARAL 759 (2102)
T ss_pred HHHHHH
Confidence 777644
No 4
>KOG4224 consensus Armadillo repeat protein VAC8 required for vacuole fusion, inheritance and cytosol-to-vacuole protein targeting [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.90 E-value=1.7e-22 Score=209.71 Aligned_cols=277 Identities=17% Similarity=0.169 Sum_probs=238.4
Q ss_pred hhhhhhcccCCCccccccchhhh---hhcCchhHHHHHhCCCHHHHHHhhCCCCHHHHHHHHHHHHHhhCCchhHHHHHH
Q 006114 370 YISKGSSRFGAPMSLQKSNPSRE---LSGQRATIAKICDEVGLPKILQLLTSEDPDVQIHAVKVVANLAAEDINQEKIVE 446 (660)
Q Consensus 370 ~i~~l~~~L~~~~~~vr~~~~~~---laa~~~~~~~I~e~ggI~~LV~LL~s~d~~vr~~Aa~aL~nLa~~~en~~~Ive 446 (660)
|++.++..+..+-..++++...- ++.-+++..++.-.|++.+|..+-++.+..+|..+.++|.|+....+|+..++.
T Consensus 127 Gl~~Li~qmmtd~vevqcnaVgCitnLaT~d~nk~kiA~sGaL~pltrLakskdirvqrnatgaLlnmThs~EnRr~LV~ 206 (550)
T KOG4224|consen 127 GLDLLILQMMTDGVEVQCNAVGCITNLATFDSNKVKIARSGALEPLTRLAKSKDIRVQRNATGALLNMTHSRENRRVLVH 206 (550)
T ss_pred ChHHHHHHhcCCCcEEEeeehhhhhhhhccccchhhhhhccchhhhHhhcccchhhHHHHHHHHHHHhhhhhhhhhhhhc
Confidence 34444444445555666666554 777788999999999999999988999999999999999999999999999999
Q ss_pred cCCHHHHHHHHccCCCHHHHHHHHHHHHHhhcCchhHHHHHhcC--ccHHHHHhhcCCCCHHHHHHHHHHHHHHhcChhH
Q 006114 447 EGGLDALLLLLRTSQNTTILRVASGAIANLAMNEMNQGLIMSRG--GGQLLAKTASKTDDPQTLRMVAGALANLCGNEKL 524 (660)
Q Consensus 447 ~GgI~~Lv~LL~~s~d~~v~~~Aa~AL~nLA~~~~n~~~Ive~g--~I~~Ll~LL~~s~d~~v~~~Aa~aLanLa~~~~~ 524 (660)
+||+|.|+.++. +.|++++..|+.+|.||+.+..+++.++..+ .||.|+.++. .+++.++..|.-+|.||+.+.++
T Consensus 207 aG~lpvLVsll~-s~d~dvqyycttaisnIaVd~~~Rk~Laqaep~lv~~Lv~Lmd-~~s~kvkcqA~lALrnlasdt~Y 284 (550)
T KOG4224|consen 207 AGGLPVLVSLLK-SGDLDVQYYCTTAISNIAVDRRARKILAQAEPKLVPALVDLMD-DGSDKVKCQAGLALRNLASDTEY 284 (550)
T ss_pred cCCchhhhhhhc-cCChhHHHHHHHHhhhhhhhHHHHHHHHhcccchHHHHHHHHh-CCChHHHHHHHHHHhhhcccchh
Confidence 999999999998 7899999999999999999999999999987 9999999996 48889999999999999999999
Q ss_pred HHHHHhccHHHHHHHHhcCCCHHHHHHHHHHHHHhhccchhhhhhcchhhhHHHhhcChHHHHHHhhcCCC-HHHHHHHH
Q 006114 525 HTMLEEDGAIKALLAMVRSGNIDVIAQVARGLANFAKCESRAIVQGQRKGRSHLMEDSALEWLIANSKTNS-ASTRRHVE 603 (660)
Q Consensus 525 r~~iv~~G~V~~Lv~lL~s~~~~v~~~Al~aLanLA~~~~~~~aq~~~e~r~~Li~~G~v~~Lv~lL~s~d-~~vr~~Aa 603 (660)
+..+++.|++|.++.+++++........+.||.||+-+ +-+-..|++.|.+.+|+++|..++ ..++.+|.
T Consensus 285 q~eiv~ag~lP~lv~Llqs~~~plilasVaCIrnisih---------plNe~lI~dagfl~pLVrlL~~~dnEeiqchAv 355 (550)
T KOG4224|consen 285 QREIVEAGSLPLLVELLQSPMGPLILASVACIRNISIH---------PLNEVLIADAGFLRPLVRLLRAGDNEEIQCHAV 355 (550)
T ss_pred hhHHHhcCCchHHHHHHhCcchhHHHHHHHHHhhcccc---------cCcccceecccchhHHHHHHhcCCchhhhhhHH
Confidence 99999999999999999999888888899999999954 445566888999999999998876 55999999
Q ss_pred HHHHHhhc-CCccHHHHHhcCcHHHHHHHHhcCChHHHHHH--HHHHHhcCcchhhh
Q 006114 604 LALCHLAQ-NEDNARDFISRGGAKELVQISIESSREDIRNL--AKKTMKSNPRLQAD 657 (660)
Q Consensus 604 ~AL~nLa~-~~e~~~~Ive~G~l~~Lv~lL~s~s~~~ir~~--A~~~L~~~p~~~~e 657 (660)
.+|++|+. +..+...|.+.|++|.|..++.++........ +...|..+..+++.
T Consensus 356 stLrnLAasse~n~~~i~esgAi~kl~eL~lD~pvsvqseisac~a~Lal~d~~k~~ 412 (550)
T KOG4224|consen 356 STLRNLAASSEHNVSVIRESGAIPKLIELLLDGPVSVQSEISACIAQLALNDNDKEA 412 (550)
T ss_pred HHHHHHhhhhhhhhHHHhhcCchHHHHHHHhcCChhHHHHHHHHHHHHHhccccHHH
Confidence 99999987 55788999999999999999998876654433 33555555555543
No 5
>KOG4224 consensus Armadillo repeat protein VAC8 required for vacuole fusion, inheritance and cytosol-to-vacuole protein targeting [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.90 E-value=3.8e-23 Score=214.58 Aligned_cols=264 Identities=20% Similarity=0.247 Sum_probs=230.4
Q ss_pred hhcccCCCccccccchhhh---hhcCchhHHHHHhCCCHHHHHHhhCCCCHHHHHHHHHHHHHhhCCchhHHHHHHcCCH
Q 006114 374 GSSRFGAPMSLQKSNPSRE---LSGQRATIAKICDEVGLPKILQLLTSEDPDVQIHAVKVVANLAAEDINQEKIVEEGGL 450 (660)
Q Consensus 374 l~~~L~~~~~~vr~~~~~~---laa~~~~~~~I~e~ggI~~LV~LL~s~d~~vr~~Aa~aL~nLa~~~en~~~Ive~GgI 450 (660)
.+..+.+.++...+.+..+ ++-...+..-|+.-+|+..|+.-+..+...+|..+++.++||+.-++|+..|...||+
T Consensus 90 vl~llqs~d~~Iq~aa~~alGnlAVn~enk~liv~l~Gl~~Li~qmmtd~vevqcnaVgCitnLaT~d~nk~kiA~sGaL 169 (550)
T KOG4224|consen 90 VLALLQSCDKCIQCAAGEALGNLAVNMENKGLIVSLLGLDLLILQMMTDGVEVQCNAVGCITNLATFDSNKVKIARSGAL 169 (550)
T ss_pred HHHHHhCcchhhhhhhhhhhccceeccCCceEEEeccChHHHHHHhcCCCcEEEeeehhhhhhhhccccchhhhhhccch
Confidence 3444444444444433333 3444445555677799999998888999999999999999999999999999999999
Q ss_pred HHHHHHHccCCCHHHHHHHHHHHHHhhcCchhHHHHHhcCccHHHHHhhcCCCCHHHHHHHHHHHHHHhcChhHHHHHHh
Q 006114 451 DALLLLLRTSQNTTILRVASGAIANLAMNEMNQGLIMSRGGGQLLAKTASKTDDPQTLRMVAGALANLCGNEKLHTMLEE 530 (660)
Q Consensus 451 ~~Lv~LL~~s~d~~v~~~Aa~AL~nLA~~~~n~~~Ive~g~I~~Ll~LL~~s~d~~v~~~Aa~aLanLa~~~~~r~~iv~ 530 (660)
.+|+.+-+ +.|..+++++.++|.|++...+++..++..|++|.|+.+++ +.|++++..++.+|.|++.+...|..+++
T Consensus 170 ~pltrLak-skdirvqrnatgaLlnmThs~EnRr~LV~aG~lpvLVsll~-s~d~dvqyycttaisnIaVd~~~Rk~Laq 247 (550)
T KOG4224|consen 170 EPLTRLAK-SKDIRVQRNATGALLNMTHSRENRRVLVHAGGLPVLVSLLK-SGDLDVQYYCTTAISNIAVDRRARKILAQ 247 (550)
T ss_pred hhhHhhcc-cchhhHHHHHHHHHHHhhhhhhhhhhhhccCCchhhhhhhc-cCChhHHHHHHHHhhhhhhhHHHHHHHHh
Confidence 99999554 88999999999999999999999999999999999999997 48999999999999999999999999999
Q ss_pred cc--HHHHHHHHhcCCCHHHHHHHHHHHHHhhccchhhhhhcchhhhHHHhhcChHHHHHHhhcCCCHHHHHHHHHHHHH
Q 006114 531 DG--AIKALLAMVRSGNIDVIAQVARGLANFAKCESRAIVQGQRKGRSHLMEDSALEWLIANSKTNSASTRRHVELALCH 608 (660)
Q Consensus 531 ~G--~V~~Lv~lL~s~~~~v~~~Al~aLanLA~~~~~~~aq~~~e~r~~Li~~G~v~~Lv~lL~s~d~~vr~~Aa~AL~n 608 (660)
.| .||.|+++++++++.++..|..+|+||++.. +....+++.|++|.++.+++++........+.++.|
T Consensus 248 aep~lv~~Lv~Lmd~~s~kvkcqA~lALrnlasdt---------~Yq~eiv~ag~lP~lv~Llqs~~~plilasVaCIrn 318 (550)
T KOG4224|consen 248 AEPKLVPALVDLMDDGSDKVKCQAGLALRNLASDT---------EYQREIVEAGSLPLLVELLQSPMGPLILASVACIRN 318 (550)
T ss_pred cccchHHHHHHHHhCCChHHHHHHHHHHhhhcccc---------hhhhHHHhcCCchHHHHHHhCcchhHHHHHHHHHhh
Confidence 98 9999999999999999999999999999763 345568899999999999999888888888899999
Q ss_pred hhcCCccHHHHHhcCcHHHHHHHHhcCChHHHHHHHHHHH
Q 006114 609 LAQNEDNARDFISRGGAKELVQISIESSREDIRNLAKKTM 648 (660)
Q Consensus 609 La~~~e~~~~Ive~G~l~~Lv~lL~s~s~~~ir~~A~~~L 648 (660)
++.++-|..-|++.|.+.+||++++.++++.++-.|..+|
T Consensus 319 isihplNe~lI~dagfl~pLVrlL~~~dnEeiqchAvstL 358 (550)
T KOG4224|consen 319 ISIHPLNEVLIADAGFLRPLVRLLRAGDNEEIQCHAVSTL 358 (550)
T ss_pred cccccCcccceecccchhHHHHHHhcCCchhhhhhHHHHH
Confidence 9999999999999999999999999999888777777665
No 6
>COG5064 SRP1 Karyopherin (importin) alpha [Intracellular trafficking and secretion]
Probab=99.89 E-value=1.8e-22 Score=208.04 Aligned_cols=248 Identities=15% Similarity=0.192 Sum_probs=205.8
Q ss_pred hcCchhHHHHHhCCCHHHHHHhhC-CCCHHHHHHHHHHHHHhhCCchhHHH-HHHcCCHHHHHHHHccCCCHHHHHHHHH
Q 006114 394 SGQRATIAKICDEVGLPKILQLLT-SEDPDVQIHAVKVVANLAAEDINQEK-IVEEGGLDALLLLLRTSQNTTILRVASG 471 (660)
Q Consensus 394 aa~~~~~~~I~e~ggI~~LV~LL~-s~d~~vr~~Aa~aL~nLa~~~en~~~-Ive~GgI~~Lv~LL~~s~d~~v~~~Aa~ 471 (660)
-.+.+.++.+++.|.+|++|.+|. ....-.+..|+|+|.|++.....+.. ++++|+||.++.+|. +++.+|+..+.|
T Consensus 101 ~E~~PPIq~VIdaGvVpRfvefm~~~q~~mlqfEAaWalTNiaSGtt~QTkvVvd~~AVPlfiqlL~-s~~~~V~eQavW 179 (526)
T COG5064 101 KETSPPIQPVIDAGVVPRFVEFMDEIQRDMLQFEAAWALTNIASGTTQQTKVVVDAGAVPLFIQLLS-STEDDVREQAVW 179 (526)
T ss_pred cccCCCchhHHhccccHHHHHHHHhcchhHHHHHHHHHHhhhccCcccceEEEEeCCchHHHHHHHc-CchHHHHHHHHH
Confidence 345678999999999999999994 67778889999999999997666655 459999999999997 778899999999
Q ss_pred HHHHhhcC-chhHHHHHhcCccHHHHHhhcCC-C------------------------------------------CHHH
Q 006114 472 AIANLAMN-EMNQGLIMSRGGGQLLAKTASKT-D------------------------------------------DPQT 507 (660)
Q Consensus 472 AL~nLA~~-~~n~~~Ive~g~I~~Ll~LL~~s-~------------------------------------------d~~v 507 (660)
||+|+|.+ +..++.+..+|++.+++.++.++ . ||++
T Consensus 180 ALGNiAGDS~~~RD~vL~~galeplL~ll~ss~~~ismlRn~TWtLSNlcRGknP~P~w~~isqalpiL~KLiys~D~ev 259 (526)
T COG5064 180 ALGNIAGDSEGCRDYVLQCGALEPLLGLLLSSAIHISMLRNATWTLSNLCRGKNPPPDWSNISQALPILAKLIYSRDPEV 259 (526)
T ss_pred HhccccCCchhHHHHHHhcCchHHHHHHHHhccchHHHHHHhHHHHHHhhCCCCCCCchHHHHHHHHHHHHHHhhcCHHH
Confidence 99999998 77788999999999998877532 2 3444
Q ss_pred HHHHHHHHHHHhc-ChhHHHHHHhccHHHHHHHHhcCCCHHHHHHHHHHHHHhhccchhhhhhcchhhhHHHhhcChHHH
Q 006114 508 LRMVAGALANLCG-NEKLHTMLEEDGAIKALLAMVRSGNIDVIAQVARGLANFAKCESRAIVQGQRKGRSHLMEDSALEW 586 (660)
Q Consensus 508 ~~~Aa~aLanLa~-~~~~r~~iv~~G~V~~Lv~lL~s~~~~v~~~Al~aLanLA~~~~~~~aq~~~e~r~~Li~~G~v~~ 586 (660)
...|+|||..|+. ..+.-..+++.|..+.|+++|.+++..++.+|++.++||..++. .....++..|+++.
T Consensus 260 lvDA~WAiSYlsDg~~E~i~avld~g~~~RLvElLs~~sa~iqtPalR~vGNIVTG~D--------~QTqviI~~G~L~a 331 (526)
T COG5064 260 LVDACWAISYLSDGPNEKIQAVLDVGIPGRLVELLSHESAKIQTPALRSVGNIVTGSD--------DQTQVIINCGALKA 331 (526)
T ss_pred HHHHHHHHHHhccCcHHHHHHHHhcCCcHHHHHHhcCccccccCHHHHhhcCeeecCc--------cceehheecccHHH
Confidence 4555555555552 23344567788999999999999999999999999999997643 34567899999999
Q ss_pred HHHhhcCCCHHHHHHHHHHHHHhhc-CCccHHHHHhcCcHHHHHHHHhcCChHHHHHHHHHHHhc
Q 006114 587 LIANSKTNSASTRRHVELALCHLAQ-NEDNARDFISRGGAKELVQISIESSREDIRNLAKKTMKS 650 (660)
Q Consensus 587 Lv~lL~s~d~~vr~~Aa~AL~nLa~-~~e~~~~Ive~G~l~~Lv~lL~s~s~~~ir~~A~~~L~~ 650 (660)
+..+|.++-..+|+.|||++.|+.. +.+....+++.+.+|+|+.++.+.+-...++++..+.+.
T Consensus 332 ~~~lLs~~ke~irKEaCWTiSNITAGnteqiqavid~nliPpLi~lls~ae~k~kKEACWAisNa 396 (526)
T COG5064 332 FRSLLSSPKENIRKEACWTISNITAGNTEQIQAVIDANLIPPLIHLLSSAEYKIKKEACWAISNA 396 (526)
T ss_pred HHHHhcChhhhhhhhhheeecccccCCHHHHHHHHhcccchHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 9999999988999999999999965 558899999999999999999887766677777766543
No 7
>KOG0166 consensus Karyopherin (importin) alpha [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.89 E-value=2.2e-21 Score=213.38 Aligned_cols=250 Identities=18% Similarity=0.259 Sum_probs=213.6
Q ss_pred hhcCchhHHHHHhCCCHHHHHHhhC-CCCHHHHHHHHHHHHHhhC-CchhHHHHHHcCCHHHHHHHHccCCCHHHHHHHH
Q 006114 393 LSGQRATIAKICDEVGLPKILQLLT-SEDPDVQIHAVKVVANLAA-EDINQEKIVEEGGLDALLLLLRTSQNTTILRVAS 470 (660)
Q Consensus 393 laa~~~~~~~I~e~ggI~~LV~LL~-s~d~~vr~~Aa~aL~nLa~-~~en~~~Ive~GgI~~Lv~LL~~s~d~~v~~~Aa 470 (660)
....++.+..++..|.||.+|.+|. ..++.++..|+|+|.|||. ..+.-..++++|+||.++.++. +++..|++.|.
T Consensus 95 S~~~~ppi~~vi~~G~v~~lV~~l~~~~~~~lq~eAAWaLTnIAsgtse~T~~vv~agavp~fi~Ll~-s~~~~v~eQav 173 (514)
T KOG0166|consen 95 SKERNPPIDEVIQSGVVPRLVEFLSRDDNPTLQFEAAWALTNIASGTSEQTKVVVDAGAVPIFIQLLS-SPSADVREQAV 173 (514)
T ss_pred ccCCCCCHHHHHHcCcHHHHHHHHccCCChhHHHHHHHHHHHHhcCchhhccccccCCchHHHHHHhc-CCcHHHHHHHH
Confidence 3444578888888899999999997 5679999999999999999 5666778889999999999997 89999999999
Q ss_pred HHHHHhhcC-chhHHHHHhcCccHHHHHhhcCCCCHHHHHHHHHHHHHHhcChhHHHH-HHhccHHHHHHHHhcCCCHHH
Q 006114 471 GAIANLAMN-EMNQGLIMSRGGGQLLAKTASKTDDPQTLRMVAGALANLCGNEKLHTM-LEEDGAIKALLAMVRSGNIDV 548 (660)
Q Consensus 471 ~AL~nLA~~-~~n~~~Ive~g~I~~Ll~LL~~s~d~~v~~~Aa~aLanLa~~~~~r~~-iv~~G~V~~Lv~lL~s~~~~v 548 (660)
|||+|+|.+ +..|..++.+|++++|+.++..+......+.++|+|.|||........ -.-..++|.|..++.+.|++|
T Consensus 174 WALgNIagds~~~Rd~vl~~g~l~pLl~~l~~~~~~~~lRn~tW~LsNlcrgk~P~P~~~~v~~iLp~L~~ll~~~D~~V 253 (514)
T KOG0166|consen 174 WALGNIAGDSPDCRDYVLSCGALDPLLRLLNKSDKLSMLRNATWTLSNLCRGKNPSPPFDVVAPILPALLRLLHSTDEEV 253 (514)
T ss_pred HHHhccccCChHHHHHHHhhcchHHHHHHhccccchHHHHHHHHHHHHHHcCCCCCCcHHHHHHHHHHHHHHHhcCCHHH
Confidence 999999998 888999999999999999997643347899999999999954422222 233478999999999999999
Q ss_pred HHHHHHHHHHhhccchhhhhhcchhhhHHHhhcChHHHHHHhhcCCCHHHHHHHHHHHHHhhcCC-ccHHHHHhcCcHHH
Q 006114 549 IAQVARGLANFAKCESRAIVQGQRKGRSHLMEDSALEWLIANSKTNSASTRRHVELALCHLAQNE-DNARDFISRGGAKE 627 (660)
Q Consensus 549 ~~~Al~aLanLA~~~~~~~aq~~~e~r~~Li~~G~v~~Lv~lL~s~d~~vr~~Aa~AL~nLa~~~-e~~~~Ive~G~l~~ 627 (660)
...||++|++|+.+.+ +.-.++++.|++|.|+.+|.+.++.++..|..+++|++.++ .....++..|++|.
T Consensus 254 l~Da~WAlsyLsdg~n--------e~iq~vi~~gvv~~LV~lL~~~~~~v~~PaLRaiGNIvtG~d~QTq~vi~~~~L~~ 325 (514)
T KOG0166|consen 254 LTDACWALSYLTDGSN--------EKIQMVIDAGVVPRLVDLLGHSSPKVVTPALRAIGNIVTGSDEQTQVVINSGALPV 325 (514)
T ss_pred HHHHHHHHHHHhcCCh--------HHHHHHHHccchHHHHHHHcCCCcccccHHHhhccceeeccHHHHHHHHhcChHHH
Confidence 9999999999997653 44567899999999999999999999999999999998877 55677789999999
Q ss_pred HHHHHhcCChHHHHHHHHHHHhcC
Q 006114 628 LVQISIESSREDIRNLAKKTMKSN 651 (660)
Q Consensus 628 Lv~lL~s~s~~~ir~~A~~~L~~~ 651 (660)
|..++.....+.++.-|-+++.+.
T Consensus 326 l~~ll~~s~~~~ikkEAcW~iSNI 349 (514)
T KOG0166|consen 326 LSNLLSSSPKESIKKEACWTISNI 349 (514)
T ss_pred HHHHhccCcchhHHHHHHHHHHHh
Confidence 999998666666888777777553
No 8
>COG5064 SRP1 Karyopherin (importin) alpha [Intracellular trafficking and secretion]
Probab=99.84 E-value=3.1e-20 Score=191.64 Aligned_cols=264 Identities=17% Similarity=0.234 Sum_probs=209.8
Q ss_pred cccchhhhhhcccCCC-ccccccchhhh---hhcCchhHHH-HHhCCCHHHHHHhhCCCCHHHHHHHHHHHHHhhCC-ch
Q 006114 366 YTKDYISKGSSRFGAP-MSLQKSNPSRE---LSGQRATIAK-ICDEVGLPKILQLLTSEDPDVQIHAVKVVANLAAE-DI 439 (660)
Q Consensus 366 ~~~g~i~~l~~~L~~~-~~~vr~~~~~~---laa~~~~~~~-I~e~ggI~~LV~LL~s~d~~vr~~Aa~aL~nLa~~-~e 439 (660)
.+.|.++..+.-++.. ..++.-.+.++ ++.......+ +++.|++|.++++|.+++.+|+..|+|+|+|+|.+ +.
T Consensus 111 IdaGvVpRfvefm~~~q~~mlqfEAaWalTNiaSGtt~QTkvVvd~~AVPlfiqlL~s~~~~V~eQavWALGNiAGDS~~ 190 (526)
T COG5064 111 IDAGVVPRFVEFMDEIQRDMLQFEAAWALTNIASGTTQQTKVVVDAGAVPLFIQLLSSTEDDVREQAVWALGNIAGDSEG 190 (526)
T ss_pred HhccccHHHHHHHHhcchhHHHHHHHHHHhhhccCcccceEEEEeCCchHHHHHHHcCchHHHHHHHHHHhccccCCchh
Confidence 5567888888777533 33444456666 4444444444 56999999999999999999999999999999995 55
Q ss_pred hHHHHHHcCCHHHHHHHHccCC-CHHHHHHHHHHHHHhhcC---------------------------------------
Q 006114 440 NQEKIVEEGGLDALLLLLRTSQ-NTTILRVASGAIANLAMN--------------------------------------- 479 (660)
Q Consensus 440 n~~~Ive~GgI~~Lv~LL~~s~-d~~v~~~Aa~AL~nLA~~--------------------------------------- 479 (660)
.|..+..+|++.+|+.+|.++. +..+.+++.|.|.|||.+
T Consensus 191 ~RD~vL~~galeplL~ll~ss~~~ismlRn~TWtLSNlcRGknP~P~w~~isqalpiL~KLiys~D~evlvDA~WAiSYl 270 (526)
T COG5064 191 CRDYVLQCGALEPLLGLLLSSAIHISMLRNATWTLSNLCRGKNPPPDWSNISQALPILAKLIYSRDPEVLVDACWAISYL 270 (526)
T ss_pred HHHHHHhcCchHHHHHHHHhccchHHHHHHhHHHHHHhhCCCCCCCchHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHh
Confidence 6888889999999999987432 345566666666666654
Q ss_pred ---ch-hHHHHHhcCccHHHHHhhcCCCCHHHHHHHHHHHHHHh-cChhHHHHHHhccHHHHHHHHhcCCCHHHHHHHHH
Q 006114 480 ---EM-NQGLIMSRGGGQLLAKTASKTDDPQTLRMVAGALANLC-GNEKLHTMLEEDGAIKALLAMVRSGNIDVIAQVAR 554 (660)
Q Consensus 480 ---~~-n~~~Ive~g~I~~Ll~LL~~s~d~~v~~~Aa~aLanLa-~~~~~r~~iv~~G~V~~Lv~lL~s~~~~v~~~Al~ 554 (660)
|. .-..+++.|+.+.|+.+|++ ++..++.-|...+.|+. +++.--+.++++|+++++..+|.++...++..||+
T Consensus 271 sDg~~E~i~avld~g~~~RLvElLs~-~sa~iqtPalR~vGNIVTG~D~QTqviI~~G~L~a~~~lLs~~ke~irKEaCW 349 (526)
T COG5064 271 SDGPNEKIQAVLDVGIPGRLVELLSH-ESAKIQTPALRSVGNIVTGSDDQTQVIINCGALKAFRSLLSSPKENIRKEACW 349 (526)
T ss_pred ccCcHHHHHHHHhcCCcHHHHHHhcC-ccccccCHHHHhhcCeeecCccceehheecccHHHHHHHhcChhhhhhhhhhe
Confidence 11 12244566788889999975 77788888999999997 66666677889999999999999998899999999
Q ss_pred HHHHhhccchhhhhhcchhhhHHHhhcChHHHHHHhhcCCCHHHHHHHHHHHHHhhcCC----ccHHHHHhcCcHHHHHH
Q 006114 555 GLANFAKCESRAIVQGQRKGRSHLMEDSALEWLIANSKTNSASTRRHVELALCHLAQNE----DNARDFISRGGAKELVQ 630 (660)
Q Consensus 555 aLanLA~~~~~~~aq~~~e~r~~Li~~G~v~~Lv~lL~s~d~~vr~~Aa~AL~nLa~~~----e~~~~Ive~G~l~~Lv~ 630 (660)
+|.||+.++. +.-.++++.+.+|+|+.+|.+.+-.+++.||||+.|...+. +-.+.+++.|++.+||.
T Consensus 350 TiSNITAGnt--------eqiqavid~nliPpLi~lls~ae~k~kKEACWAisNatsgg~~~PD~iryLv~qG~IkpLc~ 421 (526)
T COG5064 350 TISNITAGNT--------EQIQAVIDANLIPPLIHLLSSAEYKIKKEACWAISNATSGGLNRPDIIRYLVSQGFIKPLCD 421 (526)
T ss_pred eecccccCCH--------HHHHHHHhcccchHHHHHHHHHHHHHHHHHHHHHHhhhccccCCchHHHHHHHccchhHHHH
Confidence 9999998653 45567999999999999999999999999999999997754 44677778999999999
Q ss_pred HHhcCChH
Q 006114 631 ISIESSRE 638 (660)
Q Consensus 631 lL~s~s~~ 638 (660)
++.-.++.
T Consensus 422 ~L~~~dNk 429 (526)
T COG5064 422 LLDVVDNK 429 (526)
T ss_pred HHhccCcc
Confidence 99866553
No 9
>PF05804 KAP: Kinesin-associated protein (KAP)
Probab=99.77 E-value=1.3e-16 Score=183.97 Aligned_cols=262 Identities=18% Similarity=0.173 Sum_probs=218.0
Q ss_pred cccchhhhhhcccCCCccccccch---hhhhhcCchhHHHHHhCCCHHHHHHhhCCCCHHHHHHHHHHHHHhhCCchhHH
Q 006114 366 YTKDYISKGSSRFGAPMSLQKSNP---SRELSGQRATIAKICDEVGLPKILQLLTSEDPDVQIHAVKVVANLAAEDINQE 442 (660)
Q Consensus 366 ~~~g~i~~l~~~L~~~~~~vr~~~---~~~laa~~~~~~~I~e~ggI~~LV~LL~s~d~~vr~~Aa~aL~nLa~~~en~~ 442 (660)
..+|.+..++.+|+.....+.... ++-++-...+...+.+.|++|+|+.++.+++.+++..|+++|.||++++.+|.
T Consensus 287 ~~~~iV~~Lv~~Ldr~n~ellil~v~fLkkLSi~~ENK~~m~~~giV~kL~kLl~s~~~~l~~~aLrlL~NLSfd~~~R~ 366 (708)
T PF05804_consen 287 VNKGIVSLLVKCLDRENEELLILAVTFLKKLSIFKENKDEMAESGIVEKLLKLLPSENEDLVNVALRLLFNLSFDPELRS 366 (708)
T ss_pred HhcCCHHHHHHHHcCCCHHHHHHHHHHHHHHcCCHHHHHHHHHcCCHHHHHHHhcCCCHHHHHHHHHHHHHhCcCHHHHH
Confidence 457889999999987655444432 33388888999999999999999999999999999999999999999999999
Q ss_pred HHHHcCCHHHHHHHHccCCCHHHHHHHHHHHHHhhcCchhHHHHHhcCccHHHHHhhcCCCCHHHHHHHHHHHHHHhcCh
Q 006114 443 KIVEEGGLDALLLLLRTSQNTTILRVASGAIANLAMNEMNQGLIMSRGGGQLLAKTASKTDDPQTLRMVAGALANLCGNE 522 (660)
Q Consensus 443 ~Ive~GgI~~Lv~LL~~s~d~~v~~~Aa~AL~nLA~~~~n~~~Ive~g~I~~Ll~LL~~s~d~~v~~~Aa~aLanLa~~~ 522 (660)
.++..|+||.|+.+|. ++..+..|..+|++|+.++.++..+...++||.++.++..++++.+...+++++.|||.++
T Consensus 367 ~mV~~GlIPkLv~LL~---d~~~~~val~iLy~LS~dd~~r~~f~~TdcIp~L~~~Ll~~~~~~v~~eliaL~iNLa~~~ 443 (708)
T PF05804_consen 367 QMVSLGLIPKLVELLK---DPNFREVALKILYNLSMDDEARSMFAYTDCIPQLMQMLLENSEEEVQLELIALLINLALNK 443 (708)
T ss_pred HHHHCCCcHHHHHHhC---CCchHHHHHHHHHHhccCHhhHHHHhhcchHHHHHHHHHhCCCccccHHHHHHHHHHhcCH
Confidence 9999999999999997 3345677999999999999999999999999999998877777788888889999999999
Q ss_pred hHHHHHHhccHHHHHHHHhc--------------------------------------CCCHHHHHHHHHHHHHhhccch
Q 006114 523 KLHTMLEEDGAIKALLAMVR--------------------------------------SGNIDVIAQVARGLANFAKCES 564 (660)
Q Consensus 523 ~~r~~iv~~G~V~~Lv~lL~--------------------------------------s~~~~v~~~Al~aLanLA~~~~ 564 (660)
.+...|++.||++.|+.... +.+.++...|+++|+|++..+.
T Consensus 444 rnaqlm~~g~gL~~L~~ra~~~~D~lLlKlIRNiS~h~~~~k~~f~~~i~~L~~~v~~~~~ee~~vE~LGiLaNL~~~~l 523 (708)
T PF05804_consen 444 RNAQLMCEGNGLQSLMKRALKTRDPLLLKLIRNISQHDGPLKELFVDFIGDLAKIVSSGDSEEFVVECLGILANLTIPDL 523 (708)
T ss_pred HHHHHHHhcCcHHHHHHHHHhcccHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHhhcCCcHHHHHHHHHHHHhcccCCc
Confidence 99999999888887665521 1234556667777777765432
Q ss_pred hhhhhcchhhhHHHhhcChHHHHHHhhcCC--CHHHHHHHHHHHHHhhcCCccHHHHHhcCcHHHHHHHHhcCChH
Q 006114 565 RAIVQGQRKGRSHLMEDSALEWLIANSKTN--SASTRRHVELALCHLAQNEDNARDFISRGGAKELVQISIESSRE 638 (660)
Q Consensus 565 ~~~aq~~~e~r~~Li~~G~v~~Lv~lL~s~--d~~vr~~Aa~AL~nLa~~~e~~~~Ive~G~l~~Lv~lL~s~s~~ 638 (660)
+ -...+.+.+.+|+|..+|..+ .+.+.-.++..++.+|.++..+..+++.|.++.|+.++.+...+
T Consensus 524 d--------~~~ll~~~~llp~L~~~L~~g~~~dDl~LE~Vi~~gtla~d~~~A~lL~~sgli~~Li~LL~~kqeD 591 (708)
T PF05804_consen 524 D--------WAQLLQEYNLLPWLKDLLKPGASEDDLLLEVVILLGTLASDPECAPLLAKSGLIPTLIELLNAKQED 591 (708)
T ss_pred C--------HHHHHHhCCHHHHHHHHhCCCCCChHHHHHHHHHHHHHHCCHHHHHHHHhCChHHHHHHHHHhhCch
Confidence 2 223455689999999999765 46688888999999999999999999999999999999887544
No 10
>KOG4199 consensus Uncharacterized conserved protein [Function unknown]
Probab=99.71 E-value=1.7e-15 Score=156.85 Aligned_cols=256 Identities=16% Similarity=0.210 Sum_probs=213.8
Q ss_pred hcCchhHHHHHhCCCHHHHHHhhC-CCCHHHHHHHHHHHHHhhCCch----------hHHHHHHcCCHHHHHHHHccCCC
Q 006114 394 SGQRATIAKICDEVGLPKILQLLT-SEDPDVQIHAVKVVANLAAEDI----------NQEKIVEEGGLDALLLLLRTSQN 462 (660)
Q Consensus 394 aa~~~~~~~I~e~ggI~~LV~LL~-s~d~~vr~~Aa~aL~nLa~~~e----------n~~~Ive~GgI~~Lv~LL~~s~d 462 (660)
-.|..+.+.+++.+.+|.+...|. .+...+-+.+++++..+..+++ +...|+..|++..|+.++..+-|
T Consensus 176 ~~hE~nrQ~~m~~~il~Li~~~l~~~gk~~~VRel~~a~r~l~~dDDiRV~fg~ah~hAr~ia~e~~l~~L~Eal~A~~d 255 (461)
T KOG4199|consen 176 IMHEVNRQLFMELKILELILQVLNREGKTRTVRELYDAIRALLTDDDIRVVFGQAHGHARTIAKEGILTALTEALQAGID 255 (461)
T ss_pred HHhHHHHHHHHHhhHHHHHHHHHcccCccHHHHHHHHHHHHhcCCCceeeecchhhHHHHHHHHhhhHHHHHHHHHccCC
Confidence 345667778889999999996665 4445677889999999887543 35778889999999999998889
Q ss_pred HHHHHHHHHHHHHhhcCchhHHHHHhcCccHHHHHhhcCCCCHHHH---HHHHHHHHHHhcChhHHHHHHhccHHHHHHH
Q 006114 463 TTILRVASGAIANLAMNEMNQGLIMSRGGGQLLAKTASKTDDPQTL---RMVAGALANLCGNEKLHTMLEEDGAIKALLA 539 (660)
Q Consensus 463 ~~v~~~Aa~AL~nLA~~~~n~~~Ive~g~I~~Ll~LL~~s~d~~v~---~~Aa~aLanLa~~~~~r~~iv~~G~V~~Lv~ 539 (660)
|.+...++.+|..||..++.+..|++.||+..|+.++.++.+..++ +.++..|+.|+++++++..|++.||.+.++.
T Consensus 256 p~~L~~l~~tl~~lAVr~E~C~~I~e~GGl~tl~~~i~d~n~~~~r~l~k~~lslLralAG~DsvKs~IV~~gg~~~ii~ 335 (461)
T KOG4199|consen 256 PDSLVSLSTTLKALAVRDEICKSIAESGGLDTLLRCIDDSNEQGNRTLAKTCLSLLRALAGSDSVKSTIVEKGGLDKIIT 335 (461)
T ss_pred ccHHHHHHHHHHHHHHHHHHHHHHHHccCHHHHHHHHhhhchhhHHHHHHHHHHHHHHHhCCCchHHHHHHhcChHHHHH
Confidence 9999999999999999999999999999999999999886655544 6778899999999999999999999999999
Q ss_pred Hhc--CCCHHHHHHHHHHHHHhhccchhhhhhcchhhhHHHhhcChHHHHHHhhcCC--CHHHHHHHHHHHHHhhcCCcc
Q 006114 540 MVR--SGNIDVIAQVARGLANFAKCESRAIVQGQRKGRSHLMEDSALEWLIANSKTN--SASTRRHVELALCHLAQNEDN 615 (660)
Q Consensus 540 lL~--s~~~~v~~~Al~aLanLA~~~~~~~aq~~~e~r~~Li~~G~v~~Lv~lL~s~--d~~vr~~Aa~AL~nLa~~~e~ 615 (660)
++. +++|.|...++.++.-||...|+ .-..+++.|+....+..++.. ...++++|||+++|++.++..
T Consensus 336 l~~~h~~~p~Vi~~~~a~i~~l~LR~pd--------hsa~~ie~G~a~~avqAmkahP~~a~vQrnac~~IRNiv~rs~~ 407 (461)
T KOG4199|consen 336 LALRHSDDPLVIQEVMAIISILCLRSPD--------HSAKAIEAGAADLAVQAMKAHPVAAQVQRNACNMIRNIVVRSAE 407 (461)
T ss_pred HHHHcCCChHHHHHHHHHHHHHHhcCcc--------hHHHHHhcchHHHHHHHHHhCcHHHHHHHHHHHHHHHHHHhhhh
Confidence 875 78999999999999999987653 445688999999999888764 477999999999999988855
Q ss_pred HHHHHhcCcHHHHHHHHhcCCh--HHHHHHHHHHHhcCcchhhh
Q 006114 616 ARDFISRGGAKELVQISIESSR--EDIRNLAKKTMKSNPRLQAD 657 (660)
Q Consensus 616 ~~~Ive~G~l~~Lv~lL~s~s~--~~ir~~A~~~L~~~p~~~~e 657 (660)
...++-..|+..|++..++.++ +..-..|.|-|-++..+|++
T Consensus 408 ~~~~~l~~GiE~Li~~A~~~h~tce~~akaALRDLGc~v~lre~ 451 (461)
T KOG4199|consen 408 NRTILLANGIEKLIRTAKANHETCEAAAKAALRDLGCDVYLREE 451 (461)
T ss_pred ccchHHhccHHHHHHHHHhcCccHHHHHHHHHHhcCcchhhHHH
Confidence 5555555677888888887644 44666777888888888776
No 11
>PF05804 KAP: Kinesin-associated protein (KAP)
Probab=99.68 E-value=5.6e-15 Score=170.56 Aligned_cols=243 Identities=18% Similarity=0.217 Sum_probs=205.7
Q ss_pred hhcCchhHHHHHhCCCHHHHHHhhCCCCHHHHHHHHHHHHHhhCCchhHHHHHHcCCHHHHHHHHccCCCHHHHHHHHHH
Q 006114 393 LSGQRATIAKICDEVGLPKILQLLTSEDPDVQIHAVKVVANLAAEDINQEKIVEEGGLDALLLLLRTSQNTTILRVASGA 472 (660)
Q Consensus 393 laa~~~~~~~I~e~ggI~~LV~LL~s~d~~vr~~Aa~aL~nLa~~~en~~~Ive~GgI~~Lv~LL~~s~d~~v~~~Aa~A 472 (660)
++.+.....++...|+++.|+.+|.+++.++...++++|.+|+...+|+..|.+.|+|++|+.++. +++..++..++++
T Consensus 276 LAed~~ve~kM~~~~iV~~Lv~~Ldr~n~ellil~v~fLkkLSi~~ENK~~m~~~giV~kL~kLl~-s~~~~l~~~aLrl 354 (708)
T PF05804_consen 276 LAEDPRVELKMVNKGIVSLLVKCLDRENEELLILAVTFLKKLSIFKENKDEMAESGIVEKLLKLLP-SENEDLVNVALRL 354 (708)
T ss_pred HhcChHHHHHHHhcCCHHHHHHHHcCCCHHHHHHHHHHHHHHcCCHHHHHHHHHcCCHHHHHHHhc-CCCHHHHHHHHHH
Confidence 777778888999999999999999999999999999999999999999999999999999999997 7788899999999
Q ss_pred HHHhhcCchhHHHHHhcCccHHHHHhhcCCCCHHHHHHHHHHHHHHhcChhHHHHHHhccHHHHHHHHhc-CCCHHHHHH
Q 006114 473 IANLAMNEMNQGLIMSRGGGQLLAKTASKTDDPQTLRMVAGALANLCGNEKLHTMLEEDGAIKALLAMVR-SGNIDVIAQ 551 (660)
Q Consensus 473 L~nLA~~~~n~~~Ive~g~I~~Ll~LL~~s~d~~v~~~Aa~aLanLa~~~~~r~~iv~~G~V~~Lv~lL~-s~~~~v~~~ 551 (660)
|.||+.++.++..++..|+||.|+.+|.+ +..+..|..+|.+||.+++++..+...+++|.|+.++- ++++.+...
T Consensus 355 L~NLSfd~~~R~~mV~~GlIPkLv~LL~d---~~~~~val~iLy~LS~dd~~r~~f~~TdcIp~L~~~Ll~~~~~~v~~e 431 (708)
T PF05804_consen 355 LFNLSFDPELRSQMVSLGLIPKLVELLKD---PNFREVALKILYNLSMDDEARSMFAYTDCIPQLMQMLLENSEEEVQLE 431 (708)
T ss_pred HHHhCcCHHHHHHHHHCCCcHHHHHHhCC---CchHHHHHHHHHHhccCHhhHHHHhhcchHHHHHHHHHhCCCccccHH
Confidence 99999999999999999999999999964 34556688999999999999999999999999999865 566777777
Q ss_pred HHHHHHHhhccchhhhhhcchhhhHHHhhcChHHHHHHhhcCCCHHHHHHHHHHHHHhhcCCccHHHHHhcCcHHHHHHH
Q 006114 552 VARGLANFAKCESRAIVQGQRKGRSHLMEDSALEWLIANSKTNSASTRRHVELALCHLAQNEDNARDFISRGGAKELVQI 631 (660)
Q Consensus 552 Al~aLanLA~~~~~~~aq~~~e~r~~Li~~G~v~~Lv~lL~s~d~~vr~~Aa~AL~nLa~~~e~~~~Ive~G~l~~Lv~l 631 (660)
++..+.|+|... .....+...||++.|+.......+.+ ....++|++.|+.....+. .+.+.+|+.+
T Consensus 432 liaL~iNLa~~~---------rnaqlm~~g~gL~~L~~ra~~~~D~l---LlKlIRNiS~h~~~~k~~f-~~~i~~L~~~ 498 (708)
T PF05804_consen 432 LIALLINLALNK---------RNAQLMCEGNGLQSLMKRALKTRDPL---LLKLIRNISQHDGPLKELF-VDFIGDLAKI 498 (708)
T ss_pred HHHHHHHHhcCH---------HHHHHHHhcCcHHHHHHHHHhcccHH---HHHHHHHHHhcCchHHHHH-HHHHHHHHHH
Confidence 888888999653 33356777899999998765543322 3468999999984433333 3589999999
Q ss_pred HhcCChHHHHHHHHHHHhcCc
Q 006114 632 SIESSREDIRNLAKKTMKSNP 652 (660)
Q Consensus 632 L~s~s~~~ir~~A~~~L~~~p 652 (660)
+..++++++.--+..+|.+-+
T Consensus 499 v~~~~~ee~~vE~LGiLaNL~ 519 (708)
T PF05804_consen 499 VSSGDSEEFVVECLGILANLT 519 (708)
T ss_pred hhcCCcHHHHHHHHHHHHhcc
Confidence 988888888777888886553
No 12
>KOG4199 consensus Uncharacterized conserved protein [Function unknown]
Probab=99.62 E-value=1.7e-14 Score=149.58 Aligned_cols=226 Identities=21% Similarity=0.261 Sum_probs=189.4
Q ss_pred cccccchhhh-hhcCchhHHHHHhCCCHHHHHHhhCC-CCHHHHHHHHHHHHHhhCCchhHHHHHHcCCHHHHHHHHccC
Q 006114 383 SLQKSNPSRE-LSGQRATIAKICDEVGLPKILQLLTS-EDPDVQIHAVKVVANLAAEDINQEKIVEEGGLDALLLLLRTS 460 (660)
Q Consensus 383 ~~vr~~~~~~-laa~~~~~~~I~e~ggI~~LV~LL~s-~d~~vr~~Aa~aL~nLa~~~en~~~Ive~GgI~~Lv~LL~~s 460 (660)
.++-..+.++ .+......+.|++.|++..|+..+.. -++.+...++.+|..|+..++.+..|.+.||+..|+.++.++
T Consensus 216 ~l~~dDDiRV~fg~ah~hAr~ia~e~~l~~L~Eal~A~~dp~~L~~l~~tl~~lAVr~E~C~~I~e~GGl~tl~~~i~d~ 295 (461)
T KOG4199|consen 216 ALLTDDDIRVVFGQAHGHARTIAKEGILTALTEALQAGIDPDSLVSLSTTLKALAVRDEICKSIAESGGLDTLLRCIDDS 295 (461)
T ss_pred HhcCCCceeeecchhhHHHHHHHHhhhHHHHHHHHHccCCccHHHHHHHHHHHHHHHHHHHHHHHHccCHHHHHHHHhhh
Confidence 3444555666 45555667778899999999999985 478999999999999999999999999999999999999865
Q ss_pred CCHH---HHHHHHHHHHHhhcCchhHHHHHhcCccHHHHHhhc-CCCCHHHHHHHHHHHHHHh-cChhHHHHHHhccHHH
Q 006114 461 QNTT---ILRVASGAIANLAMNEMNQGLIMSRGGGQLLAKTAS-KTDDPQTLRMVAGALANLC-GNEKLHTMLEEDGAIK 535 (660)
Q Consensus 461 ~d~~---v~~~Aa~AL~nLA~~~~n~~~Ive~g~I~~Ll~LL~-~s~d~~v~~~Aa~aLanLa-~~~~~r~~iv~~G~V~ 535 (660)
.+.. +...++..|..||.+++++..|++.||.+.++.++. +..+|.|...++.+|+-|| ..|++...+++.|+-.
T Consensus 296 n~~~~r~l~k~~lslLralAG~DsvKs~IV~~gg~~~ii~l~~~h~~~p~Vi~~~~a~i~~l~LR~pdhsa~~ie~G~a~ 375 (461)
T KOG4199|consen 296 NEQGNRTLAKTCLSLLRALAGSDSVKSTIVEKGGLDKIITLALRHSDDPLVIQEVMAIISILCLRSPDHSAKAIEAGAAD 375 (461)
T ss_pred chhhHHHHHHHHHHHHHHHhCCCchHHHHHHhcChHHHHHHHHHcCCChHHHHHHHHHHHHHHhcCcchHHHHHhcchHH
Confidence 5443 446789999999999999999999999999988764 4578999999999999999 8899999999999999
Q ss_pred HHHHHhc--CCCHHHHHHHHHHHHHhhccchhhhhhcchhhhHHHhhcChHHHHHHhhcCCCHHHHHHHHHHHHHhhcCC
Q 006114 536 ALLAMVR--SGNIDVIAQVARGLANFAKCESRAIVQGQRKGRSHLMEDSALEWLIANSKTNSASTRRHVELALCHLAQNE 613 (660)
Q Consensus 536 ~Lv~lL~--s~~~~v~~~Al~aLanLA~~~~~~~aq~~~e~r~~Li~~G~v~~Lv~lL~s~d~~vr~~Aa~AL~nLa~~~ 613 (660)
..+..|+ +....++.+||+.|.|++..+ .+.+..+ -..|+..|+......++.++..|..||+.|+.+.
T Consensus 376 ~avqAmkahP~~a~vQrnac~~IRNiv~rs--------~~~~~~~-l~~GiE~Li~~A~~~h~tce~~akaALRDLGc~v 446 (461)
T KOG4199|consen 376 LAVQAMKAHPVAAQVQRNACNMIRNIVVRS--------AENRTIL-LANGIEKLIRTAKANHETCEAAAKAALRDLGCDV 446 (461)
T ss_pred HHHHHHHhCcHHHHHHHHHHHHHHHHHHhh--------hhccchH-HhccHHHHHHHHHhcCccHHHHHHHHHHhcCcch
Confidence 9999998 446789999999999999764 2344444 4566777888888889999999999999998877
Q ss_pred ccHH
Q 006114 614 DNAR 617 (660)
Q Consensus 614 e~~~ 617 (660)
.++.
T Consensus 447 ~lre 450 (461)
T KOG4199|consen 447 YLRE 450 (461)
T ss_pred hhHH
Confidence 6543
No 13
>KOG1048 consensus Neural adherens junction protein Plakophilin and related Armadillo repeat proteins [Signal transduction mechanisms; Extracellular structures]
Probab=99.56 E-value=1e-13 Score=157.49 Aligned_cols=243 Identities=23% Similarity=0.275 Sum_probs=188.3
Q ss_pred hhcCchh-HHHHHhCCCHHHHHHhhCCCCHHHHHHHHHHHHHhhC---CchhHHHHHHcCCHHHHHHHHccCCCHHHHHH
Q 006114 393 LSGQRAT-IAKICDEVGLPKILQLLTSEDPDVQIHAVKVVANLAA---EDINQEKIVEEGGLDALLLLLRTSQNTTILRV 468 (660)
Q Consensus 393 laa~~~~-~~~I~e~ggI~~LV~LL~s~d~~vr~~Aa~aL~nLa~---~~en~~~Ive~GgI~~Lv~LL~~s~d~~v~~~ 468 (660)
++..+.. ...+..-||||.||.+|.+.+.+|+..||++|.||.+ .++|+-.|.+.+|||.++.+|+...|.++++.
T Consensus 260 lcfgd~~ik~~vrqlggI~kLv~Ll~~~~~evq~~acgaLRNLvf~~~~~~NKlai~~~~Gv~~l~~~Lr~t~D~ev~e~ 339 (717)
T KOG1048|consen 260 LCFGDNKIKSRVRQLGGIPKLVALLDHRNDEVQRQACGALRNLVFGKSTDSNKLAIKELNGVPTLVRLLRHTQDDEVREL 339 (717)
T ss_pred HHhhhHHHHHHHHHhccHHHHHHHhcCCcHHHHHHHHHHHHhhhcccCCcccchhhhhcCChHHHHHHHHhhcchHHHHH
Confidence 4443333 3446678999999999999999999999999999998 34689999999999999999997789999999
Q ss_pred HHHHHHHhhcCchhHHHHHhcCccHHHHHhhcC-------------CCCHHHHHHHHHHHHHHh-cChhHHHHHHhc-cH
Q 006114 469 ASGAIANLAMNEMNQGLIMSRGGGQLLAKTASK-------------TDDPQTLRMVAGALANLC-GNEKLHTMLEED-GA 533 (660)
Q Consensus 469 Aa~AL~nLA~~~~n~~~Ive~g~I~~Ll~LL~~-------------s~d~~v~~~Aa~aLanLa-~~~~~r~~iv~~-G~ 533 (660)
.+++||||+.++..+..|+.. ++..|...+-. ..++++..+++++|+|++ ...+.|..|.++ |+
T Consensus 340 iTg~LWNLSS~D~lK~~ii~~-al~tLt~~vI~P~Sgw~~~~~~~~~~~~~vf~n~tgcLRNlSs~~~eaR~~mr~c~GL 418 (717)
T KOG1048|consen 340 ITGILWNLSSNDALKMLIITS-ALSTLTDNVIIPHSGWEEEPAPRKAEDSTVFRNVTGCLRNLSSAGQEAREQMRECDGL 418 (717)
T ss_pred HHHHHhcccchhHHHHHHHHH-HHHHHHHhhcccccccCCCCcccccccceeeehhhhhhccccchhHHHHHHHhhccch
Confidence 999999999997777666654 33443332211 114678999999999998 488889999885 88
Q ss_pred HHHHHHHhc------CCCHHHHHHHHHHHHHhhccchhhh----------------------------------------
Q 006114 534 IKALLAMVR------SGNIDVIAQVARGLANFAKCESRAI---------------------------------------- 567 (660)
Q Consensus 534 V~~Lv~lL~------s~~~~v~~~Al~aLanLA~~~~~~~---------------------------------------- 567 (660)
|..|+..++ ..+....++|+.++.|+...-...+
T Consensus 419 IdaL~~~iq~~i~~~~~d~K~VENcvCilRNLSYrl~~Evp~~~~~~~~~~~~~~~~~~~~~~~gcf~~k~~k~~~~~~~ 498 (717)
T KOG1048|consen 419 IDALLFSIQTAIQKSDLDSKSVENCVCILRNLSYRLEAEVPPKYRQVLANIARLPGVGPPAESVGCFGFKKRKSDDNCDD 498 (717)
T ss_pred HHHHHHHHHHHHHhccccchhHHHHHHHHhhcCchhhhhcCHhhhhHhhcccccccCCCcccccccccchhhhchhcccc
Confidence 999888876 2344566777777777653211000
Q ss_pred ---------hhc-------------------------------------------chhhhHHH-hhcChHHHHHHhhcCC
Q 006114 568 ---------VQG-------------------------------------------QRKGRSHL-MEDSALEWLIANSKTN 594 (660)
Q Consensus 568 ---------aq~-------------------------------------------~~e~r~~L-i~~G~v~~Lv~lL~s~ 594 (660)
..| ....+..+ ....++|+|+.++...
T Consensus 499 ~~~pe~~~~pkG~e~Lw~p~vVr~Yl~Ll~~s~n~~TlEasaGaLQNltA~~~~~~~~~~~~v~~kekgl~~l~~ll~~~ 578 (717)
T KOG1048|consen 499 LPIPERATAPKGSEWLWHPSVVRPYLLLLALSKNDNTLEASAGALQNLTAGLWTWSEYMRGAVFRKEKGLPPLVELLRND 578 (717)
T ss_pred cCCcccccCCCCceeeecHHHHHHHHHHHHHhcchHHHHHhhhhHhhhhccCCcchhHHHhhhhhhccCccHHHHHHhcC
Confidence 000 01123344 6788999999999999
Q ss_pred CHHHHHHHHHHHHHhhcCCccHHHHHhcCcHHHHHHHHhcCCh
Q 006114 595 SASTRRHVELALCHLAQNEDNARDFISRGGAKELVQISIESSR 637 (660)
Q Consensus 595 d~~vr~~Aa~AL~nLa~~~e~~~~Ive~G~l~~Lv~lL~s~s~ 637 (660)
++.|.+.++.+|.||+.+..+...|. .++++.|++.+....+
T Consensus 579 ~~~vv~s~a~~LrNls~d~rnk~lig-k~a~~~lv~~Lp~~~~ 620 (717)
T KOG1048|consen 579 DSDVVRSAAGALRNLSRDIRNKELIG-KYAIPDLVRCLPGSGP 620 (717)
T ss_pred CchHHHHHHHHHhhhccCchhhhhhh-cchHHHHHHhCcCCCC
Confidence 99999999999999999999987777 7899999999998765
No 14
>PF04826 Arm_2: Armadillo-like; InterPro: IPR006911 This entry consists of mammalian proteins of unknown function.
Probab=99.54 E-value=4.4e-13 Score=138.64 Aligned_cols=196 Identities=26% Similarity=0.277 Sum_probs=169.4
Q ss_pred HHhCCCHHHHHHhhC-CCCHHHHHHHHHHHHHhhCCchhHHHHHHcCCHHHHHHHHccCCCHHHHHHHHHHHHHhhcCch
Q 006114 403 ICDEVGLPKILQLLT-SEDPDVQIHAVKVVANLAAEDINQEKIVEEGGLDALLLLLRTSQNTTILRVASGAIANLAMNEM 481 (660)
Q Consensus 403 I~e~ggI~~LV~LL~-s~d~~vr~~Aa~aL~nLa~~~en~~~Ive~GgI~~Lv~LL~~s~d~~v~~~Aa~AL~nLA~~~~ 481 (660)
+.+.+.++.|+.+|. +.|+.++..|..++++++..+.++..|.+.||++.+..+|. ++++.++..|+++|.|++.+.+
T Consensus 8 ~l~~~~l~~Ll~lL~~t~dp~i~e~al~al~n~aaf~~nq~~Ir~~Ggi~lI~~lL~-~p~~~vr~~AL~aL~Nls~~~e 86 (254)
T PF04826_consen 8 ILEAQELQKLLCLLESTEDPFIQEKALIALGNSAAFPFNQDIIRDLGGISLIGSLLN-DPNPSVREKALNALNNLSVNDE 86 (254)
T ss_pred CcCHHHHHHHHHHHhcCCChHHHHHHHHHHHhhccChhHHHHHHHcCCHHHHHHHcC-CCChHHHHHHHHHHHhcCCChh
Confidence 356678999999998 57899999999999999999999999999999999999997 7899999999999999999999
Q ss_pred hHHHHHhcCccHHHHHh-hcCCCCHHHHHHHHHHHHHHhcChhHHHHHHhccHHHHHHHHhcCCCHHHHHHHHHHHHHhh
Q 006114 482 NQGLIMSRGGGQLLAKT-ASKTDDPQTLRMVAGALANLCGNEKLHTMLEEDGAIKALLAMVRSGNIDVIAQVARGLANFA 560 (660)
Q Consensus 482 n~~~Ive~g~I~~Ll~L-L~~s~d~~v~~~Aa~aLanLa~~~~~r~~iv~~G~V~~Lv~lL~s~~~~v~~~Al~aLanLA 560 (660)
|+..|-. .|+.++.. .+.+.+..++..+.++|+||+..+.++..+. ++++.++.++.+++..++.+++.+|.||+
T Consensus 87 n~~~Ik~--~i~~Vc~~~~s~~lns~~Q~agLrlL~nLtv~~~~~~~l~--~~i~~ll~LL~~G~~~~k~~vLk~L~nLS 162 (254)
T PF04826_consen 87 NQEQIKM--YIPQVCEETVSSPLNSEVQLAGLRLLTNLTVTNDYHHMLA--NYIPDLLSLLSSGSEKTKVQVLKVLVNLS 162 (254)
T ss_pred hHHHHHH--HHHHHHHHHhcCCCCCHHHHHHHHHHHccCCCcchhhhHH--hhHHHHHHHHHcCChHHHHHHHHHHHHhc
Confidence 9998744 36666664 4445678999999999999998888877775 47999999999999999999999999999
Q ss_pred ccchhhhhhcchhhhHHHhhcChHHHHHHhhcCC-CHHHHHHHHHHHHHhhcC
Q 006114 561 KCESRAIVQGQRKGRSHLMEDSALEWLIANSKTN-SASTRRHVELALCHLAQN 612 (660)
Q Consensus 561 ~~~~~~~aq~~~e~r~~Li~~G~v~~Lv~lL~s~-d~~vr~~Aa~AL~nLa~~ 612 (660)
.+ +.....++..++++.++.+++.. +..+...+.+.+.||..+
T Consensus 163 ~n---------p~~~~~Ll~~q~~~~~~~Lf~~~~~~~~l~~~l~~~~ni~~~ 206 (254)
T PF04826_consen 163 EN---------PDMTRELLSAQVLSSFLSLFNSSESKENLLRVLTFFENINEN 206 (254)
T ss_pred cC---------HHHHHHHHhccchhHHHHHHccCCccHHHHHHHHHHHHHHHh
Confidence 65 34455677888999999999886 677888889999999643
No 15
>KOG2122 consensus Beta-catenin-binding protein APC, contains ARM repeats [Signal transduction mechanisms; Cytoskeleton]
Probab=99.50 E-value=1.3e-11 Score=145.31 Aligned_cols=241 Identities=20% Similarity=0.214 Sum_probs=199.6
Q ss_pred hhcCchhHHHHHhCCCHHHHHHhhCC------------CCHHHHHHHHHHHHHhhC-CchhHHHHHH-cCCHHHHHHHHc
Q 006114 393 LSGQRATIAKICDEVGLPKILQLLTS------------EDPDVQIHAVKVVANLAA-EDINQEKIVE-EGGLDALLLLLR 458 (660)
Q Consensus 393 laa~~~~~~~I~e~ggI~~LV~LL~s------------~d~~vr~~Aa~aL~nLa~-~~en~~~Ive-~GgI~~Lv~LL~ 458 (660)
++.....+..+.+-||+..|-.||.- .+..+|+.|+.+|.||.+ +..|+..++. .|.+..+|..|.
T Consensus 325 ~SFDEEhR~aM~ELG~LqAIaeLl~vDh~mhgp~tnd~~~~aLRrYa~MALTNLTFGDv~NKa~LCs~rgfMeavVAQL~ 404 (2195)
T KOG2122|consen 325 LSFDEEHRHAMNELGGLQAIAELLQVDHEMHGPETNDGECNALRRYAGMALTNLTFGDVANKATLCSQRGFMEAVVAQLI 404 (2195)
T ss_pred hhccHHHHHHHHHhhhHHHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHHhhccccccccchhhhhhhhhHHHHHHHHHh
Confidence 67788888889999998888877751 135789999999999999 5567777774 566999999998
Q ss_pred cCCCHHHHHHHHHHHHHhhcC-chhHHHHH-hcCccHHHHHhhcCCCCHHHHHHHHHHHHHHh-cChhHHHHHHh-ccHH
Q 006114 459 TSQNTTILRVASGAIANLAMN-EMNQGLIM-SRGGGQLLAKTASKTDDPQTLRMVAGALANLC-GNEKLHTMLEE-DGAI 534 (660)
Q Consensus 459 ~s~d~~v~~~Aa~AL~nLA~~-~~n~~~Iv-e~g~I~~Ll~LL~~s~d~~v~~~Aa~aLanLa-~~~~~r~~iv~-~G~V 534 (660)
+...++....+++|+||+.. +.|.+.++ +.|.+..|+.+.-.......+..++.|||||+ ++.+++..|+. .|++
T Consensus 405 -s~peeL~QV~AsvLRNLSWRAD~nmKkvLrE~GsVtaLa~~al~~~kEsTLKavLSALWNLSAHcteNKA~iCaVDGAL 483 (2195)
T KOG2122|consen 405 -SAPEELLQVYASVLRNLSWRADSNMKKVLRETGSVTALAACALRNKKESTLKAVLSALWNLSAHCTENKAEICAVDGAL 483 (2195)
T ss_pred -cChHHHHHHHHHHHHhccccccccHHHHHHhhhhHHHHHHHHHHhcccchHHHHHHHHhhhhhcccccchhhhcccchH
Confidence 54557888899999999987 66665555 68889999887766666678899999999997 88899999997 5999
Q ss_pred HHHHHHhcC----CCHHHHHHHHHHHHHhhccchhhhhhcchhhhHHHhhcChHHHHHHhhcCCCHHHHHHHHHHHHHhh
Q 006114 535 KALLAMVRS----GNIDVIAQVARGLANFAKCESRAIVQGQRKGRSHLMEDSALEWLIANSKTNSASTRRHVELALCHLA 610 (660)
Q Consensus 535 ~~Lv~lL~s----~~~~v~~~Al~aLanLA~~~~~~~aq~~~e~r~~Li~~G~v~~Lv~lL~s~d~~vr~~Aa~AL~nLa 610 (660)
..||++|.. ..-.++..|.++|.|++..-. -....|..+..++++..|+.+|++.+-.|.-++|++||||+
T Consensus 484 aFLVg~LSY~~qs~tLaIIEsaGGILRNVSS~IA-----t~E~yRQILR~~NCLq~LLQ~LKS~SLTiVSNaCGTLWNLS 558 (2195)
T KOG2122|consen 484 AFLVGTLSYEGQSNTLAIIESAGGILRNVSSLIA-----TCEDYRQILRRHNCLQTLLQHLKSHSLTIVSNACGTLWNLS 558 (2195)
T ss_pred HHHHhhccccCCcchhhhhhcCccHHHHHHhHhh-----ccchHHHHHHHhhHHHHHHHHhhhcceEEeecchhhhhhhh
Confidence 999999973 345688899999998764311 01357888999999999999999999999999999999996
Q ss_pred c-CCccHHHHHhcCcHHHHHHHHhcCChHH
Q 006114 611 Q-NEDNARDFISRGGAKELVQISIESSRED 639 (660)
Q Consensus 611 ~-~~e~~~~Ive~G~l~~Lv~lL~s~s~~~ 639 (660)
- ++.....++..|+|+.|..++++.+...
T Consensus 559 AR~p~DQq~LwD~gAv~mLrnLIhSKhkMI 588 (2195)
T KOG2122|consen 559 ARSPEDQQMLWDDGAVPMLRNLIHSKHKMI 588 (2195)
T ss_pred cCCHHHHHHHHhcccHHHHHHHHhhhhhhh
Confidence 4 6688899999999999999999877665
No 16
>PF04826 Arm_2: Armadillo-like; InterPro: IPR006911 This entry consists of mammalian proteins of unknown function.
Probab=99.44 E-value=4.6e-12 Score=131.07 Aligned_cols=182 Identities=24% Similarity=0.238 Sum_probs=158.6
Q ss_pred HHHcCCHHHHHHHHccCCCHHHHHHHHHHHHHhhcCchhHHHHHhcCccHHHHHhhcCCCCHHHHHHHHHHHHHHhcChh
Q 006114 444 IVEEGGLDALLLLLRTSQNTTILRVASGAIANLAMNEMNQGLIMSRGGGQLLAKTASKTDDPQTLRMVAGALANLCGNEK 523 (660)
Q Consensus 444 Ive~GgI~~Lv~LL~~s~d~~v~~~Aa~AL~nLA~~~~n~~~Ive~g~I~~Ll~LL~~s~d~~v~~~Aa~aLanLa~~~~ 523 (660)
+.+++.+..|+.+|..+.||.+++.|..++++++.++.++..|.+.||++.+..++.+ ++|.++..|+++|.|++.+.+
T Consensus 8 ~l~~~~l~~Ll~lL~~t~dp~i~e~al~al~n~aaf~~nq~~Ir~~Ggi~lI~~lL~~-p~~~vr~~AL~aL~Nls~~~e 86 (254)
T PF04826_consen 8 ILEAQELQKLLCLLESTEDPFIQEKALIALGNSAAFPFNQDIIRDLGGISLIGSLLND-PNPSVREKALNALNNLSVNDE 86 (254)
T ss_pred CcCHHHHHHHHHHHhcCCChHHHHHHHHHHHhhccChhHHHHHHHcCCHHHHHHHcCC-CChHHHHHHHHHHHhcCCChh
Confidence 3566779999999998889999999999999999999999999999999999999975 899999999999999999999
Q ss_pred HHHHHHhccHHHHHHHHhcC--CCHHHHHHHHHHHHHhhccchhhhhhcchhhhHHHhhcChHHHHHHhhcCCCHHHHHH
Q 006114 524 LHTMLEEDGAIKALLAMVRS--GNIDVIAQVARGLANFAKCESRAIVQGQRKGRSHLMEDSALEWLIANSKTNSASTRRH 601 (660)
Q Consensus 524 ~r~~iv~~G~V~~Lv~lL~s--~~~~v~~~Al~aLanLA~~~~~~~aq~~~e~r~~Li~~G~v~~Lv~lL~s~d~~vr~~ 601 (660)
++..+-. .++.++..+.+ .+..++..++++|+|++..+ ..+..+ .+.+|.++.++.+++..++.+
T Consensus 87 n~~~Ik~--~i~~Vc~~~~s~~lns~~Q~agLrlL~nLtv~~---------~~~~~l--~~~i~~ll~LL~~G~~~~k~~ 153 (254)
T PF04826_consen 87 NQEQIKM--YIPQVCEETVSSPLNSEVQLAGLRLLTNLTVTN---------DYHHML--ANYIPDLLSLLSSGSEKTKVQ 153 (254)
T ss_pred hHHHHHH--HHHHHHHHHhcCCCCCHHHHHHHHHHHccCCCc---------chhhhH--HhhHHHHHHHHHcCChHHHHH
Confidence 9887753 57777765543 47889999999999998653 233334 347999999999999999999
Q ss_pred HHHHHHHhhcCCccHHHHHhcCcHHHHHHHHhcCChHH
Q 006114 602 VELALCHLAQNEDNARDFISRGGAKELVQISIESSRED 639 (660)
Q Consensus 602 Aa~AL~nLa~~~e~~~~Ive~G~l~~Lv~lL~s~s~~~ 639 (660)
+..+|.||+.++.....++..+++..++.++....+..
T Consensus 154 vLk~L~nLS~np~~~~~Ll~~q~~~~~~~Lf~~~~~~~ 191 (254)
T PF04826_consen 154 VLKVLVNLSENPDMTRELLSAQVLSSFLSLFNSSESKE 191 (254)
T ss_pred HHHHHHHhccCHHHHHHHHhccchhHHHHHHccCCccH
Confidence 99999999999999999999999999999998875444
No 17
>KOG1048 consensus Neural adherens junction protein Plakophilin and related Armadillo repeat proteins [Signal transduction mechanisms; Extracellular structures]
Probab=99.41 E-value=2.2e-12 Score=146.79 Aligned_cols=197 Identities=24% Similarity=0.368 Sum_probs=168.5
Q ss_pred hCCCHHHHHHhhCCCCHHHHHHHHHHHHHhhC-CchhHHHHHHcCCHHHHHHHHccCCCHHHHHHHHHHHHHhhcC---c
Q 006114 405 DEVGLPKILQLLTSEDPDVQIHAVKVVANLAA-EDINQEKIVEEGGLDALLLLLRTSQNTTILRVASGAIANLAMN---E 480 (660)
Q Consensus 405 e~ggI~~LV~LL~s~d~~vr~~Aa~aL~nLa~-~~en~~~Ive~GgI~~Lv~LL~~s~d~~v~~~Aa~AL~nLA~~---~ 480 (660)
..-.+|..+.+|.+.++.++..|+..|.++++ +...+..+...|||+.|+.+|. +++.+|+.+||+||.||... +
T Consensus 231 ~d~~lpe~i~mL~~q~~~~qsnaaaylQHlcfgd~~ik~~vrqlggI~kLv~Ll~-~~~~evq~~acgaLRNLvf~~~~~ 309 (717)
T KOG1048|consen 231 RDPTLPEVISMLMSQDPSVQSNAAAYLQHLCFGDNKIKSRVRQLGGIPKLVALLD-HRNDEVQRQACGALRNLVFGKSTD 309 (717)
T ss_pred cccccHHHHHHHhccChhhhHHHHHHHHHHHhhhHHHHHHHHHhccHHHHHHHhc-CCcHHHHHHHHHHHHhhhcccCCc
Confidence 33468999999999999999999999999999 6777889999999999999998 88999999999999999876 4
Q ss_pred hhHHHHHhcCccHHHHHhhcCCCCHHHHHHHHHHHHHHhcChhHHHHHHhccHHHHHHHHhcC----------C----CH
Q 006114 481 MNQGLIMSRGGGQLLAKTASKTDDPQTLRMVAGALANLCGNEKLHTMLEEDGAIKALLAMVRS----------G----NI 546 (660)
Q Consensus 481 ~n~~~Ive~g~I~~Ll~LL~~s~d~~v~~~Aa~aLanLa~~~~~r~~iv~~G~V~~Lv~lL~s----------~----~~ 546 (660)
+|+-.|.+.++|+.++.+|....|.+++..++++||||+.++..+..|+.. ++..|..-+-. + ..
T Consensus 310 ~NKlai~~~~Gv~~l~~~Lr~t~D~ev~e~iTg~LWNLSS~D~lK~~ii~~-al~tLt~~vI~P~Sgw~~~~~~~~~~~~ 388 (717)
T KOG1048|consen 310 SNKLAIKELNGVPTLVRLLRHTQDDEVRELITGILWNLSSNDALKMLIITS-ALSTLTDNVIIPHSGWEEEPAPRKAEDS 388 (717)
T ss_pred ccchhhhhcCChHHHHHHHHhhcchHHHHHHHHHHhcccchhHHHHHHHHH-HHHHHHHhhcccccccCCCCcccccccc
Confidence 589999999999999999998889999999999999999998888888875 45555544321 1 25
Q ss_pred HHHHHHHHHHHHhhccchhhhhhcchhhhHHHhh-cChHHHHHHhhcC------CCHHHHHHHHHHHHHhhc
Q 006114 547 DVIAQVARGLANFAKCESRAIVQGQRKGRSHLME-DSALEWLIANSKT------NSASTRRHVELALCHLAQ 611 (660)
Q Consensus 547 ~v~~~Al~aLanLA~~~~~~~aq~~~e~r~~Li~-~G~v~~Lv~lL~s------~d~~vr~~Aa~AL~nLa~ 611 (660)
++..++.+||+|+++.. .++|..+.+ .|.|+.|+..+++ .|+...+++...|.||+.
T Consensus 389 ~vf~n~tgcLRNlSs~~--------~eaR~~mr~c~GLIdaL~~~iq~~i~~~~~d~K~VENcvCilRNLSY 452 (717)
T KOG1048|consen 389 TVFRNVTGCLRNLSSAG--------QEAREQMRECDGLIDALLFSIQTAIQKSDLDSKSVENCVCILRNLSY 452 (717)
T ss_pred eeeehhhhhhccccchh--------HHHHHHHhhccchHHHHHHHHHHHHHhccccchhHHHHHHHHhhcCc
Confidence 68899999999998643 467778877 8999999987764 367788999999999975
No 18
>cd00020 ARM Armadillo/beta-catenin-like repeats. An approximately 40 amino acid long tandemly repeated sequence motif first identified in the Drosophila segment polarity gene armadillo; these repeats were also found in the mammalian armadillo homolog beta-catenin, the junctional plaque protein plakoglobin, the adenomatous polyposis coli (APC) tumor suppressor protein, and a number of other proteins. ARM has been implicated in mediating protein-protein interactions, but no common features among the target proteins recognized by the ARM repeats have been identified; related to the HEAT domain; three consecutive copies of the repeat are represented by this alignment model.
Probab=99.32 E-value=3.6e-11 Score=107.81 Aligned_cols=116 Identities=27% Similarity=0.403 Sum_probs=106.4
Q ss_pred HHHHcCCHHHHHHHHccCCCHHHHHHHHHHHHHhhcC-chhHHHHHhcCccHHHHHhhcCCCCHHHHHHHHHHHHHHhcC
Q 006114 443 KIVEEGGLDALLLLLRTSQNTTILRVASGAIANLAMN-EMNQGLIMSRGGGQLLAKTASKTDDPQTLRMVAGALANLCGN 521 (660)
Q Consensus 443 ~Ive~GgI~~Lv~LL~~s~d~~v~~~Aa~AL~nLA~~-~~n~~~Ive~g~I~~Ll~LL~~s~d~~v~~~Aa~aLanLa~~ 521 (660)
.+++.|+++.|+.+|. ++++.++..++++|++++.+ +.....++..|++|.++.++.+ +++.++..|+++|+||+.+
T Consensus 2 ~~~~~~~i~~l~~~l~-~~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~~i~~l~~~l~~-~~~~v~~~a~~~L~~l~~~ 79 (120)
T cd00020 2 AVIQAGGLPALVSLLS-SSDENVQREAAWALSNLSAGNNDNIQAVVEAGGLPALVQLLKS-EDEEVVKAALWALRNLAAG 79 (120)
T ss_pred hHHHcCChHHHHHHHH-cCCHHHHHHHHHHHHHHhcCCHHHHHHHHHCCChHHHHHHHhC-CCHHHHHHHHHHHHHHccC
Confidence 4678999999999998 66789999999999999988 8889999999999999999975 7899999999999999955
Q ss_pred h-hHHHHHHhccHHHHHHHHhcCCCHHHHHHHHHHHHHhh
Q 006114 522 E-KLHTMLEEDGAIKALLAMVRSGNIDVIAQVARGLANFA 560 (660)
Q Consensus 522 ~-~~r~~iv~~G~V~~Lv~lL~s~~~~v~~~Al~aLanLA 560 (660)
+ .....++..|+++.|+.++..++..++..|+++|++|+
T Consensus 80 ~~~~~~~~~~~g~l~~l~~~l~~~~~~~~~~a~~~l~~l~ 119 (120)
T cd00020 80 PEDNKLIVLEAGGVPKLVNLLDSSNEDIQKNATGALSNLA 119 (120)
T ss_pred cHHHHHHHHHCCChHHHHHHHhcCCHHHHHHHHHHHHHhh
Confidence 5 66777888999999999999999999999999999987
No 19
>cd00020 ARM Armadillo/beta-catenin-like repeats. An approximately 40 amino acid long tandemly repeated sequence motif first identified in the Drosophila segment polarity gene armadillo; these repeats were also found in the mammalian armadillo homolog beta-catenin, the junctional plaque protein plakoglobin, the adenomatous polyposis coli (APC) tumor suppressor protein, and a number of other proteins. ARM has been implicated in mediating protein-protein interactions, but no common features among the target proteins recognized by the ARM repeats have been identified; related to the HEAT domain; three consecutive copies of the repeat are represented by this alignment model.
Probab=99.32 E-value=3.5e-11 Score=107.90 Aligned_cols=116 Identities=33% Similarity=0.482 Sum_probs=106.0
Q ss_pred HHHhCCCHHHHHHhhCCCCHHHHHHHHHHHHHhhCC-chhHHHHHHcCCHHHHHHHHccCCCHHHHHHHHHHHHHhhcCc
Q 006114 402 KICDEVGLPKILQLLTSEDPDVQIHAVKVVANLAAE-DINQEKIVEEGGLDALLLLLRTSQNTTILRVASGAIANLAMNE 480 (660)
Q Consensus 402 ~I~e~ggI~~LV~LL~s~d~~vr~~Aa~aL~nLa~~-~en~~~Ive~GgI~~Lv~LL~~s~d~~v~~~Aa~AL~nLA~~~ 480 (660)
.+++.|+++.|+.+|.+++..++..|+++|++++.. ++....++..|++|.|+.+|. ++++.++..|+++|++|+.++
T Consensus 2 ~~~~~~~i~~l~~~l~~~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~~i~~l~~~l~-~~~~~v~~~a~~~L~~l~~~~ 80 (120)
T cd00020 2 AVIQAGGLPALVSLLSSSDENVQREAAWALSNLSAGNNDNIQAVVEAGGLPALVQLLK-SEDEEVVKAALWALRNLAAGP 80 (120)
T ss_pred hHHHcCChHHHHHHHHcCCHHHHHHHHHHHHHHhcCCHHHHHHHHHCCChHHHHHHHh-CCCHHHHHHHHHHHHHHccCc
Confidence 467889999999999999999999999999999995 888999999999999999998 679999999999999999884
Q ss_pred -hhHHHHHhcCccHHHHHhhcCCCCHHHHHHHHHHHHHHh
Q 006114 481 -MNQGLIMSRGGGQLLAKTASKTDDPQTLRMVAGALANLC 519 (660)
Q Consensus 481 -~n~~~Ive~g~I~~Ll~LL~~s~d~~v~~~Aa~aLanLa 519 (660)
.....+...|+++.|+.++.+ .+..++..++++|++|+
T Consensus 81 ~~~~~~~~~~g~l~~l~~~l~~-~~~~~~~~a~~~l~~l~ 119 (120)
T cd00020 81 EDNKLIVLEAGGVPKLVNLLDS-SNEDIQKNATGALSNLA 119 (120)
T ss_pred HHHHHHHHHCCChHHHHHHHhc-CCHHHHHHHHHHHHHhh
Confidence 567777889999999999975 68899999999999987
No 20
>PRK09687 putative lyase; Provisional
Probab=99.29 E-value=1.2e-10 Score=122.58 Aligned_cols=236 Identities=15% Similarity=0.038 Sum_probs=159.5
Q ss_pred hhhhhhcccCCCccccccchhhhhhcCchhHHHHHhCCCHHHHHHhhCCCCHHHHHHHHHHHHHhhCCchhHHHHHHcCC
Q 006114 370 YISKGSSRFGAPMSLQKSNPSRELSGQRATIAKICDEVGLPKILQLLTSEDPDVQIHAVKVVANLAAEDINQEKIVEEGG 449 (660)
Q Consensus 370 ~i~~l~~~L~~~~~~vr~~~~~~laa~~~~~~~I~e~ggI~~LV~LL~s~d~~vr~~Aa~aL~nLa~~~en~~~Ive~Gg 449 (660)
.+..++..|.+.++.+|..+.+++.. +-....++.+..++.++++.+|..|+++|+.|...+.. ....
T Consensus 24 ~~~~L~~~L~d~d~~vR~~A~~aL~~-------~~~~~~~~~l~~ll~~~d~~vR~~A~~aLg~lg~~~~~-----~~~a 91 (280)
T PRK09687 24 NDDELFRLLDDHNSLKRISSIRVLQL-------RGGQDVFRLAIELCSSKNPIERDIGADILSQLGMAKRC-----QDNV 91 (280)
T ss_pred cHHHHHHHHhCCCHHHHHHHHHHHHh-------cCcchHHHHHHHHHhCCCHHHHHHHHHHHHhcCCCccc-----hHHH
Confidence 44557777888888888776666433 11234567778889999999999999999998763322 1125
Q ss_pred HHHHHHHHccCCCHHHHHHHHHHHHHhhcCchhHHHHHhcCccHHHHHhhcCCCCHHHHHHHHHHHHHHhcChhHHHHHH
Q 006114 450 LDALLLLLRTSQNTTILRVASGAIANLAMNEMNQGLIMSRGGGQLLAKTASKTDDPQTLRMVAGALANLCGNEKLHTMLE 529 (660)
Q Consensus 450 I~~Lv~LL~~s~d~~v~~~Aa~AL~nLA~~~~n~~~Ive~g~I~~Ll~LL~~s~d~~v~~~Aa~aLanLa~~~~~r~~iv 529 (660)
++.|..++..++++.|+..|+.+|+.++...... ...++..+...+.+ +++.|+..|+++|+.+.
T Consensus 92 ~~~L~~l~~~D~d~~VR~~A~~aLG~~~~~~~~~----~~~a~~~l~~~~~D-~~~~VR~~a~~aLg~~~---------- 156 (280)
T PRK09687 92 FNILNNLALEDKSACVRASAINATGHRCKKNPLY----SPKIVEQSQITAFD-KSTNVRFAVAFALSVIN---------- 156 (280)
T ss_pred HHHHHHHHhcCCCHHHHHHHHHHHhccccccccc----chHHHHHHHHHhhC-CCHHHHHHHHHHHhccC----------
Confidence 7888878656889999999999999986432111 11134556666655 58899999999997653
Q ss_pred hccHHHHHHHHhcCCCHHHHHHHHHHHHHhhccchhhhhhcchhhhHHHhhcChHHHHHHhhcCCCHHHHHHHHHHHHHh
Q 006114 530 EDGAIKALLAMVRSGNIDVIAQVARGLANFAKCESRAIVQGQRKGRSHLMEDSALEWLIANSKTNSASTRRHVELALCHL 609 (660)
Q Consensus 530 ~~G~V~~Lv~lL~s~~~~v~~~Al~aLanLA~~~~~~~aq~~~e~r~~Li~~G~v~~Lv~lL~s~d~~vr~~Aa~AL~nL 609 (660)
...+++.|+.++.++++.|+..|+.+|+.+...++ .+++.|+.++.+.+..||..|+++|+.+
T Consensus 157 ~~~ai~~L~~~L~d~~~~VR~~A~~aLg~~~~~~~-----------------~~~~~L~~~L~D~~~~VR~~A~~aLg~~ 219 (280)
T PRK09687 157 DEAAIPLLINLLKDPNGDVRNWAAFALNSNKYDNP-----------------DIREAFVAMLQDKNEEIRIEAIIGLALR 219 (280)
T ss_pred CHHHHHHHHHHhcCCCHHHHHHHHHHHhcCCCCCH-----------------HHHHHHHHHhcCCChHHHHHHHHHHHcc
Confidence 22478899999999999999999999998853322 3566777777777777777777777654
Q ss_pred hcC------------CccHH----HHH---hcCcHHHHHHHHhcCChHHHHHHHHHHHh
Q 006114 610 AQN------------EDNAR----DFI---SRGGAKELVQISIESSREDIRNLAKKTMK 649 (660)
Q Consensus 610 a~~------------~e~~~----~Iv---e~G~l~~Lv~lL~s~s~~~ir~~A~~~L~ 649 (660)
... +..+. .++ ..-++|.|..++....+..++..|...|+
T Consensus 220 ~~~~av~~Li~~L~~~~~~~~a~~ALg~ig~~~a~p~L~~l~~~~~d~~v~~~a~~a~~ 278 (280)
T PRK09687 220 KDKRVLSVLIKELKKGTVGDLIIEAAGELGDKTLLPVLDTLLYKFDDNEIITKAIDKLK 278 (280)
T ss_pred CChhHHHHHHHHHcCCchHHHHHHHHHhcCCHhHHHHHHHHHhhCCChhHHHHHHHHHh
Confidence 221 11111 111 12356777777764445556666666664
No 21
>KOG2122 consensus Beta-catenin-binding protein APC, contains ARM repeats [Signal transduction mechanisms; Cytoskeleton]
Probab=99.26 E-value=3.7e-11 Score=141.57 Aligned_cols=208 Identities=20% Similarity=0.245 Sum_probs=175.4
Q ss_pred hhHHHHHh-CCCHHHHHHhhCCCCHHHHHHHHHHHHHhhCC-chh-HHHHHHcCCHHHHHHHHccCCCHHHHHHHHHHHH
Q 006114 398 ATIAKICD-EVGLPKILQLLTSEDPDVQIHAVKVVANLAAE-DIN-QEKIVEEGGLDALLLLLRTSQNTTILRVASGAIA 474 (660)
Q Consensus 398 ~~~~~I~e-~ggI~~LV~LL~s~d~~vr~~Aa~aL~nLa~~-~en-~~~Ive~GgI~~Lv~LL~~s~d~~v~~~Aa~AL~ 474 (660)
.+.+.++. .|++..||..|.+...++...-+++|.||+.. +.| +..+.+.|-|..|+.+--...........+.|||
T Consensus 384 ~NKa~LCs~rgfMeavVAQL~s~peeL~QV~AsvLRNLSWRAD~nmKkvLrE~GsVtaLa~~al~~~kEsTLKavLSALW 463 (2195)
T KOG2122|consen 384 ANKATLCSQRGFMEAVVAQLISAPEELLQVYASVLRNLSWRADSNMKKVLRETGSVTALAACALRNKKESTLKAVLSALW 463 (2195)
T ss_pred cchhhhhhhhhHHHHHHHHHhcChHHHHHHHHHHHHhccccccccHHHHHHhhhhHHHHHHHHHHhcccchHHHHHHHHh
Confidence 35566665 47799999999999999999999999999994 555 5555578889999877654555556678999999
Q ss_pred HhhcC-chhHHHHHh-cCccHHHHHhhcCC---CCHHHHHHHHHHHHHHh----cChhHHHHHHhccHHHHHHHHhcCCC
Q 006114 475 NLAMN-EMNQGLIMS-RGGGQLLAKTASKT---DDPQTLRMVAGALANLC----GNEKLHTMLEEDGAIKALLAMVRSGN 545 (660)
Q Consensus 475 nLA~~-~~n~~~Ive-~g~I~~Ll~LL~~s---~d~~v~~~Aa~aLanLa----~~~~~r~~iv~~G~V~~Lv~lL~s~~ 545 (660)
||+.| .+|+..|+. .|++..|+.+|... ....+...|-+.|.|.+ .+.++|+.+.+..++..|+..|++..
T Consensus 464 NLSAHcteNKA~iCaVDGALaFLVg~LSY~~qs~tLaIIEsaGGILRNVSS~IAt~E~yRQILR~~NCLq~LLQ~LKS~S 543 (2195)
T KOG2122|consen 464 NLSAHCTENKAEICAVDGALAFLVGTLSYEGQSNTLAIIESAGGILRNVSSLIATCEDYRQILRRHNCLQTLLQHLKSHS 543 (2195)
T ss_pred hhhhcccccchhhhcccchHHHHHhhccccCCcchhhhhhcCccHHHHHHhHhhccchHHHHHHHhhHHHHHHHHhhhcc
Confidence 99988 889999987 78899999999742 23356677778888876 67889999999999999999999999
Q ss_pred HHHHHHHHHHHHHhhccchhhhhhcchhhhHHHhhcChHHHHHHhhcCCCHHHHHHHHHHHHHhhcCC
Q 006114 546 IDVIAQVARGLANFAKCESRAIVQGQRKGRSHLMEDSALEWLIANSKTNSASTRRHVELALCHLAQNE 613 (660)
Q Consensus 546 ~~v~~~Al~aLanLA~~~~~~~aq~~~e~r~~Li~~G~v~~Lv~lL~s~d~~vr~~Aa~AL~nLa~~~ 613 (660)
-.|..++|++|+||...++ ....+|++.|+|+.|..++.+++..+-..++.||.||--+.
T Consensus 544 LTiVSNaCGTLWNLSAR~p--------~DQq~LwD~gAv~mLrnLIhSKhkMIa~GSaaALrNLln~R 603 (2195)
T KOG2122|consen 544 LTIVSNACGTLWNLSARSP--------EDQQMLWDDGAVPMLRNLIHSKHKMIAMGSAAALRNLLNFR 603 (2195)
T ss_pred eEEeecchhhhhhhhcCCH--------HHHHHHHhcccHHHHHHHHhhhhhhhhhhHHHHHHHHhcCC
Confidence 9999999999999997764 56788999999999999999999999999999999996554
No 22
>KOG0240 consensus Kinesin (SMY1 subfamily) [Cytoskeleton]
Probab=99.24 E-value=6e-10 Score=122.73 Aligned_cols=224 Identities=21% Similarity=0.107 Sum_probs=181.0
Q ss_pred CccchhhhhhhhcchHHHHHHHHHHHHHhhHHHHHHhhhhhhhH--HHHHHHHHHHHhhHHHHHhhHHHHHHHHHHHHHH
Q 006114 1 MKVVNMVKLKEEFDYESLCRKLETQVDHLTAEIERKQKLRENDK--CELEKLLRECQISYDEAKDNLVTQVELLTAKIEM 78 (660)
Q Consensus 1 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 78 (660)
|.|.|||.+.+||+|+..||++|++.|++++..+..+|+++..+ +.-|.-..++.+++++..+...
T Consensus 329 k~ikN~v~~n~e~~~e~~~r~~e~~kd~~~~~~~~~~~~~~sl~~~~~~E~~~~de~~~~~~~~k~~~------------ 396 (607)
T KOG0240|consen 329 KTIKNTVWVNLELTAEEWKRKLEKKKDKNVALKEELEKLRNSLKRWRNGEEVKEDEDFSLKEEAKMSA------------ 396 (607)
T ss_pred ccccchhhhhhHhhHHHHHHHHHHHHhHHHHHHHHHHHHHHHHhhhcccCcccchhhhhHHHHHHhhh------------
Confidence 57899999999999999999999999999999999999887766 6677777788888877666211
Q ss_pred HHHhhhhchHHHHHHHHHHHhhHHHHHHhhhhhhhHHHHhhhhHH---HHHHHHHhhhhhhhhhhhhHHHHHHHHHHHhh
Q 006114 79 QQKLRENDKYEFEKQLRESQISYDESMRNLVTRSEFLEKENAHLE---LEVEKILGELNHQKDQNNLKREKIVQLEISLK 155 (660)
Q Consensus 79 ~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 155 (660)
.+.++..++.+.+..++ .-+.+....|++|.+.++...++..+|.++|+
T Consensus 397 ----------------------------~~~~~~~~i~~~~~~~~~~~~~~~e~~~~L~qqlD~kd~~~n~~sqL~~~lk 448 (607)
T KOG0240|consen 397 ----------------------------ILSEEEMSITKLKGSLEEEEDILTERIESLYQQLDQKDDQINKQSQLMEKLK 448 (607)
T ss_pred ----------------------------hhhhhhhhhhhcccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 11123333344443222 22333345678999999999999999999999
Q ss_pred hhhhhhhhhhhhHHHHHHhhHHHHHHHHHHHHHHHHHHhhhhchHHHHHHHHHHHhhhhhhHHHHhhhhhHHHHHHhhHH
Q 006114 156 NSKQQQLDNSSYQKVLADTTQMYEKKITELIKQLEIEHARSEGAEEQVDTMKKLISDNQKSIEQYEMENSTYQKALADTT 235 (660)
Q Consensus 156 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~e~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~l~~~~ 235 (660)
+-.++|.++...-.-...++|.++.+|.++...-+++-.+...+.+++.+...+.++.+.++. .
T Consensus 449 ~q~~~qee~~s~~~~~~e~~q~e~~~~Q~~~e~~~~e~~e~~~al~el~~~~~~~~~~~~~~~----------------~ 512 (607)
T KOG0240|consen 449 EQLLDQEELLSSTRRLYEDIQQELSEIQEENEAAKDEVKEVLTALEELAVNYDQKSEEKESKL----------------S 512 (607)
T ss_pred HHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHhhhh----------------h
Confidence 999999999999999999999999999998888888887888888888888777777664433 2
Q ss_pred HHHHHHHHHHhhhhhhhhhhhhhhHHhHHHHHHHhhhhhccccch
Q 006114 236 QLYEKKIAELNKKLEDEHACFEGAVEQLDMVKKLLSDYQNSNQGQ 280 (660)
Q Consensus 236 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 280 (660)
|-|+.+|.+|.+-.++...|...+..+|.......++.+......
T Consensus 513 ~n~~sel~sl~~~~~~~~~r~~~~~~~l~~~~~~~~~~~~~~~~~ 557 (607)
T KOG0240|consen 513 QNLKSELQSLQEPSEHQSKRITELLSELRKDLGEIGWKIGTSSEK 557 (607)
T ss_pred hhhHHHHHhhhhcccchhHHHHHHHHHHHhhhccccccccCCccc
Confidence 228999999999999999999999999999999888887766554
No 23
>PF10508 Proteasom_PSMB: Proteasome non-ATPase 26S subunit; InterPro: IPR019538 The 26S proteasome is an enzymatic complex that degrades ubiquitinated proteins in eukaryotic cells. 26S proteasome non-ATPase regulatory subunit 5 is one of a number of chaperones that are involved in the assembly of the proteasome. The chaperones dissociate before 26S proteasome formation is complete [].; GO: 0044183 protein binding involved in protein folding
Probab=99.20 E-value=2e-09 Score=122.16 Aligned_cols=274 Identities=15% Similarity=0.166 Sum_probs=207.4
Q ss_pred ccchhhhhhcccCCCccccccchhhh---hhcCchh-HHHHHhCCCHHHHHHhhCCCCHHHHHHHHHHHHHhhCCchhHH
Q 006114 367 TKDYISKGSSRFGAPMSLQKSNPSRE---LSGQRAT-IAKICDEVGLPKILQLLTSEDPDVQIHAVKVVANLAAEDINQE 442 (660)
Q Consensus 367 ~~g~i~~l~~~L~~~~~~vr~~~~~~---laa~~~~-~~~I~e~ggI~~LV~LL~s~d~~vr~~Aa~aL~nLa~~~en~~ 442 (660)
...-.+-+..|+..+.+.+|...++. +..++.. ...+.+.+.++.++.++.+++..|...|+.+|..|+.++....
T Consensus 75 ~~~~~~~L~~gL~h~~~~Vr~l~l~~l~~~~~~~~~~~~~~~~~~l~~~i~~~L~~~d~~Va~~A~~~L~~l~~~~~~~~ 154 (503)
T PF10508_consen 75 LPQYQPFLQRGLTHPSPKVRRLALKQLGRIARHSEGAAQLLVDNELLPLIIQCLRDPDLSVAKAAIKALKKLASHPEGLE 154 (503)
T ss_pred HHHHHHHHHHHhcCCCHHHHHHHHHHHHHHhcCCHHHHHHhcCccHHHHHHHHHcCCcHHHHHHHHHHHHHHhCCchhHH
Confidence 45556677888888888999887775 4444544 4445678889999999999999999999999999999888888
Q ss_pred HHHHcCCHHHHHHHHccCCCHHHHHHHHHHHHHhhcC-chhHHHHHhcCccHHHHHhhcCCCCHHHHHHHHHHHHHHhcC
Q 006114 443 KIVEEGGLDALLLLLRTSQNTTILRVASGAIANLAMN-EMNQGLIMSRGGGQLLAKTASKTDDPQTLRMVAGALANLCGN 521 (660)
Q Consensus 443 ~Ive~GgI~~Lv~LL~~s~d~~v~~~Aa~AL~nLA~~-~~n~~~Ive~g~I~~Ll~LL~~s~d~~v~~~Aa~aLanLa~~ 521 (660)
.++..++++.|..++. .+++.++..+..++.+++.. ++....+...|.++.++..+.+ .|.-++.+|+..|..|+..
T Consensus 155 ~l~~~~~~~~L~~l~~-~~~~~vR~Rv~el~v~i~~~S~~~~~~~~~sgll~~ll~eL~~-dDiLvqlnalell~~La~~ 232 (503)
T PF10508_consen 155 QLFDSNLLSKLKSLMS-QSSDIVRCRVYELLVEIASHSPEAAEAVVNSGLLDLLLKELDS-DDILVQLNALELLSELAET 232 (503)
T ss_pred HHhCcchHHHHHHHHh-ccCHHHHHHHHHHHHHHHhcCHHHHHHHHhccHHHHHHHHhcC-ccHHHHHHHHHHHHHHHcC
Confidence 8889989999999997 55778888999999999866 8888888899999999999976 8889999999999999999
Q ss_pred hhHHHHHHhccHHHHHHHHhcCC--CH---HHHHH-HHHHHHHhhccchhhhhhcchhhhHHHhhcChHHHHHHhhcCCC
Q 006114 522 EKLHTMLEEDGAIKALLAMVRSG--NI---DVIAQ-VARGLANFAKCESRAIVQGQRKGRSHLMEDSALEWLIANSKTNS 595 (660)
Q Consensus 522 ~~~r~~iv~~G~V~~Lv~lL~s~--~~---~v~~~-Al~aLanLA~~~~~~~aq~~~e~r~~Li~~G~v~~Lv~lL~s~d 595 (660)
+.+...+.+.|+++.|+.++... +| .+..+ .+...++++..+|...... -...+..+..++.+.|
T Consensus 233 ~~g~~yL~~~gi~~~L~~~l~~~~~dp~~~~~~l~g~~~f~g~la~~~~~~v~~~---------~p~~~~~l~~~~~s~d 303 (503)
T PF10508_consen 233 PHGLQYLEQQGIFDKLSNLLQDSEEDPRLSSLLLPGRMKFFGNLARVSPQEVLEL---------YPAFLERLFSMLESQD 303 (503)
T ss_pred hhHHHHHHhCCHHHHHHHHHhccccCCcccchhhhhHHHHHHHHHhcChHHHHHH---------HHHHHHHHHHHhCCCC
Confidence 99999999999999999999743 23 22323 2356667775433211110 0224445566677889
Q ss_pred HHHHHHHHHHHHHhhcCCccHHHH-Hhc-CcHHHHHHHHhc---CChHHHHHHHHHHHhcC
Q 006114 596 ASTRRHVELALCHLAQNEDNARDF-ISR-GGAKELVQISIE---SSREDIRNLAKKTMKSN 651 (660)
Q Consensus 596 ~~vr~~Aa~AL~nLa~~~e~~~~I-ve~-G~l~~Lv~lL~s---~s~~~ir~~A~~~L~~~ 651 (660)
+..+..|..+++.+|...+....+ ... +.+...+..+.+ ..+.++|..+...|.+.
T Consensus 304 ~~~~~~A~dtlg~igst~~G~~~L~~~~~~~~~~~l~~~~~~~~~~~~~lk~r~l~al~~i 364 (503)
T PF10508_consen 304 PTIREVAFDTLGQIGSTVEGKQLLLQKQGPAMKHVLKAIGDAIKSGSTELKLRALHALASI 364 (503)
T ss_pred hhHHHHHHHHHHHHhCCHHHHHHHHhhcchHHHHHHHHHHHHhcCCchHHHHHHHHHHHHH
Confidence 999999999999999888877777 433 344444333322 23345666666555443
No 24
>PF10508 Proteasom_PSMB: Proteasome non-ATPase 26S subunit; InterPro: IPR019538 The 26S proteasome is an enzymatic complex that degrades ubiquitinated proteins in eukaryotic cells. 26S proteasome non-ATPase regulatory subunit 5 is one of a number of chaperones that are involved in the assembly of the proteasome. The chaperones dissociate before 26S proteasome formation is complete [].; GO: 0044183 protein binding involved in protein folding
Probab=99.19 E-value=1.8e-09 Score=122.63 Aligned_cols=215 Identities=13% Similarity=0.114 Sum_probs=183.4
Q ss_pred HHHHHhhCCCCHHHHHHHHHHHHHhhCCchhHHHHHHcCCHHHHHHHHccCCCHHHHHHHHHHHHHhhcCchh-HHHHHh
Q 006114 410 PKILQLLTSEDPDVQIHAVKVVANLAAEDINQEKIVEEGGLDALLLLLRTSQNTTILRVASGAIANLAMNEMN-QGLIMS 488 (660)
Q Consensus 410 ~~LV~LL~s~d~~vr~~Aa~aL~nLa~~~en~~~Ive~GgI~~Lv~LL~~s~d~~v~~~Aa~AL~nLA~~~~n-~~~Ive 488 (660)
+.++..|...+.+.-..++.+|..+......... ..+..+.|...|. ++++.|+..++..|++++.+++. ...+.+
T Consensus 41 ~~lf~~L~~~~~e~v~~~~~iL~~~l~~~~~~~l--~~~~~~~L~~gL~-h~~~~Vr~l~l~~l~~~~~~~~~~~~~~~~ 117 (503)
T PF10508_consen 41 PVLFDCLNTSNREQVELICDILKRLLSALSPDSL--LPQYQPFLQRGLT-HPSPKVRRLALKQLGRIARHSEGAAQLLVD 117 (503)
T ss_pred HHHHHHHhhcChHHHHHHHHHHHHHHhccCHHHH--HHHHHHHHHHHhc-CCCHHHHHHHHHHHHHHhcCCHHHHHHhcC
Confidence 3377778877777667888888887774333333 4556888889997 88999999999999999988655 555667
Q ss_pred cCccHHHHHhhcCCCCHHHHHHHHHHHHHHhcChhHHHHHHhccHHHHHHHHhcCCCHHHHHHHHHHHHHhhccchhhhh
Q 006114 489 RGGGQLLAKTASKTDDPQTLRMVAGALANLCGNEKLHTMLEEDGAIKALLAMVRSGNIDVIAQVARGLANFAKCESRAIV 568 (660)
Q Consensus 489 ~g~I~~Ll~LL~~s~d~~v~~~Aa~aLanLa~~~~~r~~iv~~G~V~~Lv~lL~s~~~~v~~~Al~aLanLA~~~~~~~a 568 (660)
.++++.++.++.+ ++..|...|+.+|.+|+.++.....+...++++.|..++..++..++..++.++.+++..++
T Consensus 118 ~~l~~~i~~~L~~-~d~~Va~~A~~~L~~l~~~~~~~~~l~~~~~~~~L~~l~~~~~~~vR~Rv~el~v~i~~~S~---- 192 (503)
T PF10508_consen 118 NELLPLIIQCLRD-PDLSVAKAAIKALKKLASHPEGLEQLFDSNLLSKLKSLMSQSSDIVRCRVYELLVEIASHSP---- 192 (503)
T ss_pred ccHHHHHHHHHcC-CcHHHHHHHHHHHHHHhCCchhHHHHhCcchHHHHHHHHhccCHHHHHHHHHHHHHHHhcCH----
Confidence 9999999999975 88999999999999999888888888899999999999998888999999999999997754
Q ss_pred hcchhhhHHHhhcChHHHHHHhhcCCCHHHHHHHHHHHHHhhcCCccHHHHHhcCcHHHHHHHHhcCC
Q 006114 569 QGQRKGRSHLMEDSALEWLIANSKTNSASTRRHVELALCHLAQNEDNARDFISRGGAKELVQISIESS 636 (660)
Q Consensus 569 q~~~e~r~~Li~~G~v~~Lv~lL~s~d~~vr~~Aa~AL~nLa~~~e~~~~Ive~G~l~~Lv~lL~s~s 636 (660)
+....+...|.++.++..+.++|.-++.+|+..|..|+..+.+...+.+.|+++.|+.++....
T Consensus 193 ----~~~~~~~~sgll~~ll~eL~~dDiLvqlnalell~~La~~~~g~~yL~~~gi~~~L~~~l~~~~ 256 (503)
T PF10508_consen 193 ----EAAEAVVNSGLLDLLLKELDSDDILVQLNALELLSELAETPHGLQYLEQQGIFDKLSNLLQDSE 256 (503)
T ss_pred ----HHHHHHHhccHHHHHHHHhcCccHHHHHHHHHHHHHHHcChhHHHHHHhCCHHHHHHHHHhccc
Confidence 4456688899999999999999999999999999999998899999999999999999997663
No 25
>KOG4500 consensus Rho/Rac GTPase guanine nucleotide exchange factor smgGDS/Vimar [Signal transduction mechanisms]
Probab=99.12 E-value=1.9e-09 Score=115.35 Aligned_cols=227 Identities=19% Similarity=0.201 Sum_probs=170.4
Q ss_pred HhCCCHHHHHHhhCCCCHHHHHHHHHHHHHhhC-CchhHHHHHHcCCHHHHHHHHcc---CCC---HHHHHHHHHHHHHh
Q 006114 404 CDEVGLPKILQLLTSEDPDVQIHAVKVVANLAA-EDINQEKIVEEGGLDALLLLLRT---SQN---TTILRVASGAIANL 476 (660)
Q Consensus 404 ~e~ggI~~LV~LL~s~d~~vr~~Aa~aL~nLa~-~~en~~~Ive~GgI~~Lv~LL~~---s~d---~~v~~~Aa~AL~nL 476 (660)
+.++++..|.+..+|++.++....+++|+|+|. +.++|..|.+.||-..++.+|+. .++ ......+++.|.|.
T Consensus 84 I~a~~le~Lrq~psS~d~ev~~Q~~RaLgNiCydn~E~R~a~~~lgGaqivid~L~~~cs~d~~ane~~~~v~~g~l~Ny 163 (604)
T KOG4500|consen 84 IDAEALELLRQTPSSPDTEVHEQCFRALGNICYDNNENRAAFFNLGGAQIVIDVLKPYCSKDNPANEEYSAVAFGVLHNY 163 (604)
T ss_pred hHHHHHHHHHhCCCCCcccHHHHHHHHHhhhhccCchhHHHHHhcCCceehHhhhccccccCCccHHHHHHHHHHHHHHh
Confidence 567888899999999999999999999999999 89999999999996666666642 122 35666788899988
Q ss_pred hcC-chhHHHHHhcCccHHHHHhhcCC---------------------------------------------CCHHHHHH
Q 006114 477 AMN-EMNQGLIMSRGGGQLLAKTASKT---------------------------------------------DDPQTLRM 510 (660)
Q Consensus 477 A~~-~~n~~~Ive~g~I~~Ll~LL~~s---------------------------------------------~d~~v~~~ 510 (660)
..+ +..+..+++.|+++.|..++.-. -.|+...+
T Consensus 164 ~l~~~~l~aq~~~~gVl~tL~~~~~I~~qNaa~~e~ll~~f~nlls~~~e~~~~~~~d~sl~~~l~~ll~~~v~~d~~eM 243 (604)
T KOG4500|consen 164 ILDSRELRAQVADAGVLNTLAITYWIDWQNAALTEKLLAPFFNLLSFVCEMLYPFCKDCSLVFMLLQLLPSMVREDIDEM 243 (604)
T ss_pred hCCcHHHHHHHHhcccHHHHHHHhhcccccHHHHHHHHhccccHHHHHHHhhhhhhccchHHHHHHHHHHHhhccchhhH
Confidence 765 78899999999999776544210 11233334
Q ss_pred HHHHHHHHhcChhHHHHHHhcc--------------------------------------------------HHHHHHHH
Q 006114 511 VAGALANLCGNEKLHTMLEEDG--------------------------------------------------AIKALLAM 540 (660)
Q Consensus 511 Aa~aLanLa~~~~~r~~iv~~G--------------------------------------------------~V~~Lv~l 540 (660)
....|+..+.++..+-.+++.| .+..+++.
T Consensus 244 ~feila~~aend~Vkl~la~~gl~e~~~~lv~~~k~~t~k~d~~~l~k~~~el~vllltGDeSMq~L~~~p~~l~~~~sw 323 (604)
T KOG4500|consen 244 IFEILAKAAENDLVKLSLAQNGLLEDSIDLVRNMKDFTKKTDMLNLFKRIAELDVLLLTGDESMQKLHADPQFLDFLESW 323 (604)
T ss_pred HHHHHHHHhcCcceeeehhhcchHHHHHHHHHhcccccchHHHHHHHHhhhhHhhhhhcCchHHHHHhcCcHHHHHHHHH
Confidence 4444444444433333333333 34445555
Q ss_pred hcCCCHHHHHHHHHHHHHhhccchhhhhhcchhhhHHHhhcChHHHHHHhhcC-----CCHHHHHHHHHHHHHhhcCCcc
Q 006114 541 VRSGNIDVIAQVARGLANFAKCESRAIVQGQRKGRSHLMEDSALEWLIANSKT-----NSASTRRHVELALCHLAQNEDN 615 (660)
Q Consensus 541 L~s~~~~v~~~Al~aLanLA~~~~~~~aq~~~e~r~~Li~~G~v~~Lv~lL~s-----~d~~vr~~Aa~AL~nLa~~~e~ 615 (660)
++|.+.+.+..+..+|+||+..++ ....+++.|.+..|+.++.. ++-.++.+++.||+||...-.+
T Consensus 324 ~~S~d~~l~t~g~LaigNfaR~D~---------~ci~~v~~~~~nkL~~~l~~~~~vdgnV~~qhA~lsALRnl~IPv~n 394 (604)
T KOG4500|consen 324 FRSDDSNLITMGSLAIGNFARRDD---------ICIQLVQKDFLNKLISCLMQEKDVDGNVERQHACLSALRNLMIPVSN 394 (604)
T ss_pred hcCCchhHHHHHHHHHHhhhccch---------HHHHHHHHHHHHHHHHHHHHhcCCCccchhHHHHHHHHHhccccCCc
Confidence 667777888889999999998764 34458889999999998755 2456678899999999999999
Q ss_pred HHHHHhcCcHHHHHHHHhcCChHH
Q 006114 616 ARDFISRGGAKELVQISIESSRED 639 (660)
Q Consensus 616 ~~~Ive~G~l~~Lv~lL~s~s~~~ 639 (660)
...++.+|+...++..+...++++
T Consensus 395 ka~~~~aGvteaIL~~lk~~~ppv 418 (604)
T KOG4500|consen 395 KAHFAPAGVTEAILLQLKLASPPV 418 (604)
T ss_pred hhhccccchHHHHHHHHHhcCCcc
Confidence 999999999999999999888775
No 26
>PRK09687 putative lyase; Provisional
Probab=99.12 E-value=4.4e-09 Score=110.74 Aligned_cols=170 Identities=15% Similarity=0.162 Sum_probs=133.4
Q ss_pred HHhCCCHHHHHHhhCCCCHHHHHHHHHHHHHhhCCchhHHHHHHcCCHHHHHHHHccCCCHHHHHHHHHHHHHhhcCchh
Q 006114 403 ICDEVGLPKILQLLTSEDPDVQIHAVKVVANLAAEDINQEKIVEEGGLDALLLLLRTSQNTTILRVASGAIANLAMNEMN 482 (660)
Q Consensus 403 I~e~ggI~~LV~LL~s~d~~vr~~Aa~aL~nLa~~~en~~~Ive~GgI~~Lv~LL~~s~d~~v~~~Aa~AL~nLA~~~~n 482 (660)
.+..-.++.|+.+|.+++..+|..|+++|..+.. ...++.+..++. ++|+.+|..|+++|+.|...+..
T Consensus 19 ~~~~~~~~~L~~~L~d~d~~vR~~A~~aL~~~~~----------~~~~~~l~~ll~-~~d~~vR~~A~~aLg~lg~~~~~ 87 (280)
T PRK09687 19 QCKKLNDDELFRLLDDHNSLKRISSIRVLQLRGG----------QDVFRLAIELCS-SKNPIERDIGADILSQLGMAKRC 87 (280)
T ss_pred HHhhccHHHHHHHHhCCCHHHHHHHHHHHHhcCc----------chHHHHHHHHHh-CCCHHHHHHHHHHHHhcCCCccc
Confidence 3455678999999999999999999999976643 335777788776 88999999999999998543221
Q ss_pred HHHHHhcCccHHHHHhhcCCCCHHHHHHHHHHHHHHhcChhHHHHHHhccHHHHHHHHhcCCCHHHHHHHHHHHHHhhcc
Q 006114 483 QGLIMSRGGGQLLAKTASKTDDPQTLRMVAGALANLCGNEKLHTMLEEDGAIKALLAMVRSGNIDVIAQVARGLANFAKC 562 (660)
Q Consensus 483 ~~~Ive~g~I~~Ll~LL~~s~d~~v~~~Aa~aLanLa~~~~~r~~iv~~G~V~~Lv~lL~s~~~~v~~~Al~aLanLA~~ 562 (660)
...+++.|..++.+.+++.|+..|+.+|++++...... ...+++.+..++.++++.|+..|+.+|+.+..
T Consensus 88 -----~~~a~~~L~~l~~~D~d~~VR~~A~~aLG~~~~~~~~~----~~~a~~~l~~~~~D~~~~VR~~a~~aLg~~~~- 157 (280)
T PRK09687 88 -----QDNVFNILNNLALEDKSACVRASAINATGHRCKKNPLY----SPKIVEQSQITAFDKSTNVRFAVAFALSVIND- 157 (280)
T ss_pred -----hHHHHHHHHHHHhcCCCHHHHHHHHHHHhccccccccc----chHHHHHHHHHhhCCCHHHHHHHHHHHhccCC-
Confidence 12357888877556688999999999999987322110 12356667788888899999999999987652
Q ss_pred chhhhhhcchhhhHHHhhcChHHHHHHhhcCCCHHHHHHHHHHHHHhhc
Q 006114 563 ESRAIVQGQRKGRSHLMEDSALEWLIANSKTNSASTRRHVELALCHLAQ 611 (660)
Q Consensus 563 ~~~~~aq~~~e~r~~Li~~G~v~~Lv~lL~s~d~~vr~~Aa~AL~nLa~ 611 (660)
..+++.|+.++.++++.||..|+++|+.+..
T Consensus 158 ------------------~~ai~~L~~~L~d~~~~VR~~A~~aLg~~~~ 188 (280)
T PRK09687 158 ------------------EAAIPLLINLLKDPNGDVRNWAAFALNSNKY 188 (280)
T ss_pred ------------------HHHHHHHHHHhcCCCHHHHHHHHHHHhcCCC
Confidence 2478999999999999999999999999843
No 27
>KOG1222 consensus Kinesin associated protein KAP [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.05 E-value=6.4e-09 Score=112.52 Aligned_cols=308 Identities=15% Similarity=0.150 Sum_probs=213.7
Q ss_pred hhhccHHHHHHHHHHHHHHHHhhhhHHHHHHHHhhCCCCCCccccCCCcccchhhhhhcccCCCccc---cccchhhhhh
Q 006114 318 KETMSDELQAARQRLLVEEKQRKAIEYELVKLKKTAPEHDDDFEDKKPYTKDYISKGSSRFGAPMSL---QKSNPSRELS 394 (660)
Q Consensus 318 ~~~~~eel~~~~k~l~~e~~~rkkLe~E~~~l~~~l~~~~~~~~~~~~~~~g~i~~l~~~L~~~~~~---vr~~~~~~la 394 (660)
.+++-+|+.++-|.+.--..+..+|-.--..++-++++-.......+ .+.-+.-++.+|+-.... +...+++-++
T Consensus 255 netLk~e~dr~~kklk~~~~KQeqLLrva~ylLlNlAed~~~ElKMr--rkniV~mLVKaLdr~n~~Ll~lv~~FLkKLS 332 (791)
T KOG1222|consen 255 NETLKEEIDRLNKKLKTAIRKQEQLLRVAVYLLLNLAEDISVELKMR--RKNIVAMLVKALDRSNSSLLTLVIKFLKKLS 332 (791)
T ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHH--HHhHHHHHHHHHcccchHHHHHHHHHHHHhh
Confidence 34455677777777777666555555555555555444322221111 122333446666543321 1223344466
Q ss_pred cCchhHHHHHhCCCHHHHHHhhCCCCHHHHHHHHHHHHHhhCCchhHHHHHHcCCHHHHHHHHccCCCHHHHHHHHHHHH
Q 006114 395 GQRATIAKICDEVGLPKILQLLTSEDPDVQIHAVKVVANLAAEDINQEKIVEEGGLDALLLLLRTSQNTTILRVASGAIA 474 (660)
Q Consensus 395 a~~~~~~~I~e~ggI~~LV~LL~s~d~~vr~~Aa~aL~nLa~~~en~~~Ive~GgI~~Lv~LL~~s~d~~v~~~Aa~AL~ 474 (660)
--..+...+.+.|.+..|+.++.+.+++++...+..|.|++++..++..++..|-+|.|+.+|.++. -...|...|+
T Consensus 333 If~eNK~~M~~~~iveKL~klfp~~h~dL~~~tl~LlfNlSFD~glr~KMv~~GllP~l~~ll~~d~---~~~iA~~~lY 409 (791)
T KOG1222|consen 333 IFDENKIVMEQNGIVEKLLKLFPIQHPDLRKATLMLLFNLSFDSGLRPKMVNGGLLPHLASLLDSDT---KHGIALNMLY 409 (791)
T ss_pred hhccchHHHHhccHHHHHHHhcCCCCHHHHHHHHHHhhhccccccccHHHhhccchHHHHHHhCCcc---cchhhhhhhh
Confidence 6667777788889999999999999999999999999999999999999999999999999998432 2345888999
Q ss_pred HhhcCchhHHHHHhcCccHHHHHhhcCCCCHHHHHHHHHHHHHHhcChhHHHHHHhccHHHHHHHH--------------
Q 006114 475 NLAMNEMNQGLIMSRGGGQLLAKTASKTDDPQTLRMVAGALANLCGNEKLHTMLEEDGAIKALLAM-------------- 540 (660)
Q Consensus 475 nLA~~~~n~~~Ive~g~I~~Ll~LL~~s~d~~v~~~Aa~aLanLa~~~~~r~~iv~~G~V~~Lv~l-------------- 540 (660)
.++.+++.+..+.-.++|+.+...+-.+.+..|-......-.|||.+..+.+.+++..|+..|+..
T Consensus 410 h~S~dD~~K~MfayTdci~~lmk~v~~~~~~~vdl~lia~ciNl~lnkRNaQlvceGqgL~~LM~ra~k~~D~lLmK~vR 489 (791)
T KOG1222|consen 410 HLSCDDDAKAMFAYTDCIKLLMKDVLSGTGSEVDLALIALCINLCLNKRNAQLVCEGQGLDLLMERAIKSRDLLLMKVVR 489 (791)
T ss_pred hhccCcHHHHHHHHHHHHHHHHHHHHhcCCceecHHHHHHHHHHHhccccceEEecCcchHHHHHHHhcccchHHHHHHH
Confidence 999999988888889999998876655455455444444445777766666666665555543332
Q ss_pred -----------------------hcC-CCHHHHHHHHHHHHHhhccchhhhhhcchhhhHHHhhcChHHHHHHhhcCC--
Q 006114 541 -----------------------VRS-GNIDVIAQVARGLANFAKCESRAIVQGQRKGRSHLMEDSALEWLIANSKTN-- 594 (660)
Q Consensus 541 -----------------------L~s-~~~~v~~~Al~aLanLA~~~~~~~aq~~~e~r~~Li~~G~v~~Lv~lL~s~-- 594 (660)
+.. .+..+...|+++++||+..+.++ -..+.+...|||+-..|...
T Consensus 490 niSqHeg~tqn~FidyvgdLa~i~~nd~~E~F~~EClGtlanL~v~dldw--------~~ilq~~~LvPw~k~~L~pga~ 561 (791)
T KOG1222|consen 490 NISQHEGATQNMFIDYVGDLAGIAKNDNSESFGLECLGTLANLKVTDLDW--------AKILQSENLVPWMKTQLQPGAD 561 (791)
T ss_pred HhhhccchHHHHHHHHHHHHHHHhhcCchHHHHHHHHHHHhhcccCCCCH--------HHHHhhccccHHHHHhhcCCcc
Confidence 221 22335556777777777654433 23456689999999998875
Q ss_pred CHHHHHHHHHHHHHhhcCCccHHHHHhcCcHHHHHHHHhcCChH
Q 006114 595 SASTRRHVELALCHLAQNEDNARDFISRGGAKELVQISIESSRE 638 (660)
Q Consensus 595 d~~vr~~Aa~AL~nLa~~~e~~~~Ive~G~l~~Lv~lL~s~s~~ 638 (660)
.+.+.-....+++.++.+...+.-+..+|+++.|+.+++++..+
T Consensus 562 eddLvL~~vi~~GT~a~d~~cA~Lla~a~~i~tlieLL~a~QeD 605 (791)
T KOG1222|consen 562 EDDLVLQIVIACGTMARDLDCARLLAPAKLIDTLIELLQACQED 605 (791)
T ss_pred chhhhhHHHHHhhhhhhhhHHHHHhCccccHHHHHHHHHhhccc
Confidence 34566677888889999999999999999999999999987544
No 28
>PF03224 V-ATPase_H_N: V-ATPase subunit H; InterPro: IPR004908 ATPases (or ATP synthases) are membrane-bound enzyme complexes/ion transporters that combine ATP synthesis and/or hydrolysis with the transport of protons across a membrane. ATPases can harness the energy from a proton gradient, using the flux of ions across the membrane via the ATPase proton channel to drive the synthesis of ATP. Some ATPases work in reverse, using the energy from the hydrolysis of ATP to create a proton gradient. There are different types of ATPases, which can differ in function (ATP synthesis and/or hydrolysis), structure (e.g., F-, V- and A-ATPases, which contain rotary motors) and in the type of ions they transport [, ]. The different types include: F-ATPases (F1F0-ATPases), which are found in mitochondria, chloroplasts and bacterial plasma membranes where they are the prime producers of ATP, using the proton gradient generated by oxidative phosphorylation (mitochondria) or photosynthesis (chloroplasts). V-ATPases (V1V0-ATPases), which are primarily found in eukaryotic vacuoles and catalyse ATP hydrolysis to transport solutes and lower pH in organelles. A-ATPases (A1A0-ATPases), which are found in Archaea and function like F-ATPases (though with respect to their structure and some inhibitor responses, A-ATPases are more closely related to the V-ATPases). P-ATPases (E1E2-ATPases), which are found in bacteria and in eukaryotic plasma membranes and organelles, and function to transport a variety of different ions across membranes. E-ATPases, which are cell-surface enzymes that hydrolyse a range of NTPs, including extracellular ATP. V-ATPases (also known as V1V0-ATPase or vacuolar ATPase) (3.6.3.14 from EC) are found in the eukaryotic endomembrane system, and in the plasma membrane of prokaryotes and certain specialised eukaryotic cells. V-ATPases hydrolyse ATP to drive a proton pump, and are involved in a variety of vital intra- and inter-cellular processes such as receptor mediated endocytosis, protein trafficking, active transport of metabolites, homeostasis and neurotransmitter release []. V-ATPases are composed of two linked complexes: the V1 complex (subunits A-H) contains the catalytic core that hydrolyses ATP, while the V0 complex (subunits a, c, c', c'', d) forms the membrane-spanning pore. V-ATPases may have an additional role in membrane fusion through binding to t-SNARE proteins []. This entry represents subunit H (also known as Vma13p) found in the V1 complex of V-ATPases. This subunit has a regulatory function, being responsible for activating ATPase activity and coupling ATPase activity to proton flow []. The yeast enzyme contains five motifs similar to the HEAT or Armadillo repeats seen in the importins, and can be divided into two distinct domains: a large N-terminal domain consisting of stacked alpha helices, and a smaller C-terminal alpha-helical domain with a similar superhelical topology to an armadillo repeat []. More information about this protein can be found at Protein of the Month: ATP Synthases [].; GO: 0046961 proton-transporting ATPase activity, rotational mechanism, 0015991 ATP hydrolysis coupled proton transport, 0000221 vacuolar proton-transporting V-type ATPase, V1 domain; PDB: 1HO8_A.
Probab=99.02 E-value=1.4e-08 Score=108.56 Aligned_cols=224 Identities=17% Similarity=0.145 Sum_probs=161.8
Q ss_pred HHHHHHhhC--CCCHHHHHHHHHHHHHhhC-CchhHHHHHHc------CCHHHHHHHHccCCCHHHHHHHHHHHHHhhcC
Q 006114 409 LPKILQLLT--SEDPDVQIHAVKVVANLAA-EDINQEKIVEE------GGLDALLLLLRTSQNTTILRVASGAIANLAMN 479 (660)
Q Consensus 409 I~~LV~LL~--s~d~~vr~~Aa~aL~nLa~-~~en~~~Ive~------GgI~~Lv~LL~~s~d~~v~~~Aa~AL~nLA~~ 479 (660)
...++.+|. +.+.++....+..+..+.. ++.....+... ....+++.++. .+|..+...|+.+|+.|+..
T Consensus 57 ~~~~l~lL~~~~~~~d~v~yvL~li~dll~~~~~~~~~~~~~~~~~~~~~~~~fl~ll~-~~D~~i~~~a~~iLt~Ll~~ 135 (312)
T PF03224_consen 57 ASLFLNLLNKLSSNDDTVQYVLTLIDDLLSDDPSRVELFLELAKQDDSDPYSPFLKLLD-RNDSFIQLKAAFILTSLLSQ 135 (312)
T ss_dssp -----HHHHHH---HHHHHHHHHHHHHHHH-SSSSHHHHHHHHH-TTH--HHHHHHH-S--SSHHHHHHHHHHHHHHHTS
T ss_pred HHHHHHHHHHccCcHHHHHHHHHHHHHHHhcCHHHHHHHHHhcccccchhHHHHHHHhc-CCCHHHHHHHHHHHHHHHHc
Confidence 445556664 4788999999999999877 55555555541 24788888776 67999999999999999877
Q ss_pred chhHHHHHhcCccHHHHHhhcCC---CCHHHHHHHHHHHHHHhcChhHHHHHHhccHHHHHHHHh-----c--CCCHHHH
Q 006114 480 EMNQGLIMSRGGGQLLAKTASKT---DDPQTLRMVAGALANLCGNEKLHTMLEEDGAIKALLAMV-----R--SGNIDVI 549 (660)
Q Consensus 480 ~~n~~~Ive~g~I~~Ll~LL~~s---~d~~v~~~Aa~aLanLa~~~~~r~~iv~~G~V~~Lv~lL-----~--s~~~~v~ 549 (660)
.+........+.++.++..+.+. ++..++..|+.+|.+|...+.+|..+.+.|+++.|+.++ . +.+..++
T Consensus 136 ~~~~~~~~~~~~l~~ll~~L~~~l~~~~~~~~~~av~~L~~LL~~~~~R~~f~~~~~v~~l~~iL~~~~~~~~~~~~Ql~ 215 (312)
T PF03224_consen 136 GPKRSEKLVKEALPKLLQWLSSQLSSSDSELQYIAVQCLQNLLRSKEYRQVFWKSNGVSPLFDILRKQATNSNSSGIQLQ 215 (312)
T ss_dssp TTT--HHHHHHHHHHHHHHHH-TT-HHHH---HHHHHHHHHHHTSHHHHHHHHTHHHHHHHHHHHH---------HHHHH
T ss_pred CCccccchHHHHHHHHHHHHHHhhcCCCcchHHHHHHHHHHHhCcchhHHHHHhcCcHHHHHHHHHhhcccCCCCchhHH
Confidence 44444433356677777777642 344567888999999999999999999999999999999 2 3456788
Q ss_pred HHHHHHHHHhhccchhhhhhcchhhhHHHhhcChHHHHHHhhcCC-CHHHHHHHHHHHHHhhcCCc--cHHHHHhcCcHH
Q 006114 550 AQVARGLANFAKCESRAIVQGQRKGRSHLMEDSALEWLIANSKTN-SASTRRHVELALCHLAQNED--NARDFISRGGAK 626 (660)
Q Consensus 550 ~~Al~aLanLA~~~~~~~aq~~~e~r~~Li~~G~v~~Lv~lL~s~-d~~vr~~Aa~AL~nLa~~~e--~~~~Ive~G~l~ 626 (660)
..++.|++.|++. +.....+...+.++.|+.+++.. -..|-+.+.++|.||...+. +...|+..|+++
T Consensus 216 Y~~ll~lWlLSF~---------~~~~~~~~~~~~i~~L~~i~~~~~KEKvvRv~la~l~Nl~~~~~~~~~~~mv~~~~l~ 286 (312)
T PF03224_consen 216 YQALLCLWLLSFE---------PEIAEELNKKYLIPLLADILKDSIKEKVVRVSLAILRNLLSKAPKSNIELMVLCGLLK 286 (312)
T ss_dssp HHHHHHHHHHTTS---------HHHHHHHHTTSHHHHHHHHHHH--SHHHHHHHHHHHHHTTSSSSTTHHHHHHHH-HHH
T ss_pred HHHHHHHHHHhcC---------HHHHHHHhccchHHHHHHHHHhcccchHHHHHHHHHHHHHhccHHHHHHHHHHccHHH
Confidence 9999999999976 34556678888999999998765 58899999999999988775 889999998888
Q ss_pred HHHHHHhcC-ChHHHHH
Q 006114 627 ELVQISIES-SREDIRN 642 (660)
Q Consensus 627 ~Lv~lL~s~-s~~~ir~ 642 (660)
.+..+.... +++++.+
T Consensus 287 ~l~~L~~rk~~Dedl~e 303 (312)
T PF03224_consen 287 TLQNLSERKWSDEDLTE 303 (312)
T ss_dssp HHHHHHSS--SSHHHHH
T ss_pred HHHHHhcCCCCCHHHHH
Confidence 877777654 5555544
No 29
>cd00256 VATPase_H VATPase_H, regulatory vacuolar ATP synthase subunit H (Vma13p); activation component of the peripheral V1 complex of V-ATPase, a heteromultimeric enzyme which uses ATP to actively transport protons into organelles and extracellular compartments. The topology is that of a superhelical spiral, in part the geometry is similar to superhelices composed of armadillo repeat motifs, as found in importins for example.
Probab=98.99 E-value=1.2e-08 Score=112.55 Aligned_cols=194 Identities=14% Similarity=0.140 Sum_probs=153.3
Q ss_pred HHHHHhhCCC-CHHHHHHHHHHHHHhhCCchhHHHHHHcCCHHHHHHHHccCC-CHHHHHHHHHHHHHhhcCchhHHHHH
Q 006114 410 PKILQLLTSE-DPDVQIHAVKVVANLAAEDINQEKIVEEGGLDALLLLLRTSQ-NTTILRVASGAIANLAMNEMNQGLIM 487 (660)
Q Consensus 410 ~~LV~LL~s~-d~~vr~~Aa~aL~nLa~~~en~~~Ive~GgI~~Lv~LL~~s~-d~~v~~~Aa~AL~nLA~~~~n~~~Iv 487 (660)
+.|...+.++ +...+..|+..|..|...+..|..+.+.+|+++|+.+|+... +..++..++-|+|-|+.+++......
T Consensus 146 ~~l~~~l~~~~~~~~~~~~v~~L~~LL~~~~~R~~f~~~~~v~~L~~~L~~~~~~~Ql~Y~~ll~lWlLSF~~~~~~~~~ 225 (429)
T cd00256 146 NWLKEQLNNITNNDYVQTAARCLQMLLRVDEYRFAFVLADGVPTLVKLLSNATLGFQLQYQSIFCIWLLTFNPHAAEVLK 225 (429)
T ss_pred HHHHHHhhccCCcchHHHHHHHHHHHhCCchHHHHHHHccCHHHHHHHHhhccccHHHHHHHHHHHHHHhccHHHHHhhc
Confidence 4555666554 577888888999999999999999999999999999998655 67899999999999999988888777
Q ss_pred hcCccHHHHHhhcCCCCHHHHHHHHHHHHHHhcC-------hhHHHHHHhccHHHHHHHH--------------------
Q 006114 488 SRGGGQLLAKTASKTDDPQTLRMVAGALANLCGN-------EKLHTMLEEDGAIKALLAM-------------------- 540 (660)
Q Consensus 488 e~g~I~~Ll~LL~~s~d~~v~~~Aa~aLanLa~~-------~~~r~~iv~~G~V~~Lv~l-------------------- 540 (660)
..|.|+.|+.+++.+.-..+.+.+..+|.||... ......|++.|+++.+-.+
T Consensus 226 ~~~~i~~l~~i~k~s~KEKvvRv~l~~l~Nll~~~~~~~~~~~~~~~mv~~~l~~~l~~L~~rk~~DedL~edl~~L~e~ 305 (429)
T cd00256 226 RLSLIQDLSDILKESTKEKVIRIVLAIFRNLISKRVDREVKKTAALQMVQCKVLKTLQSLEQRKYDDEDLTDDLKFLTEE 305 (429)
T ss_pred cccHHHHHHHHHHhhhhHHHHHHHHHHHHHHhhcccccchhhhHHHHHHHcChHHHHHHHhcCCCCcHHHHHHHHHHHHH
Confidence 8999999999999888889999999999999853 2355677887777643333
Q ss_pred --------------------------------------------------------hc-CCCHHHHHHHHHHHHHhhccc
Q 006114 541 --------------------------------------------------------VR-SGNIDVIAQVARGLANFAKCE 563 (660)
Q Consensus 541 --------------------------------------------------------L~-s~~~~v~~~Al~aLanLA~~~ 563 (660)
+. +.+|.+..-||.=||.++.
T Consensus 306 L~~~~k~ltsfD~Y~~El~sg~L~WSp~H~se~FW~EN~~kf~~~~~~llk~L~~iL~~s~d~~~laVAc~Dige~vr-- 383 (429)
T cd00256 306 LKNSVQDLSSFDEYKSELRSGRLHWSPVHKSEKFWRENADRLNEKNYELLKILIHLLETSVDPIILAVACHDIGEYVR-- 383 (429)
T ss_pred HHHHHHHcCCHHHHHHHHhcCCccCCCCCCCchHHHHHHHHHHhcchHHHHHHHHHHhcCCCcceeehhhhhHHHHHH--
Confidence 21 2233333334444444443
Q ss_pred hhhhhhcchhhhHHHhhcChHHHHHHhhcCCCHHHHHHHHHHHHHhhc
Q 006114 564 SRAIVQGQRKGRSHLMEDSALEWLIANSKTNSASTRRHVELALCHLAQ 611 (660)
Q Consensus 564 ~~~~aq~~~e~r~~Li~~G~v~~Lv~lL~s~d~~vr~~Aa~AL~nLa~ 611 (660)
.+|.||..+...|+=..++.++.++|+.|+..|..|+..|-.
T Consensus 384 ------~~P~gr~i~~~lg~K~~vM~Lm~h~d~~Vr~eAL~avQklm~ 425 (429)
T cd00256 384 ------HYPRGKDVVEQLGGKQRVMRLLNHEDPNVRYEALLAVQKLMV 425 (429)
T ss_pred ------HCccHHHHHHHcCcHHHHHHHhcCCCHHHHHHHHHHHHHHHH
Confidence 357899999999999999999999999999999999987743
No 30
>KOG2160 consensus Armadillo/beta-catenin-like repeat-containing protein [Posttranslational modification, protein turnover, chaperones]
Probab=98.86 E-value=2.3e-07 Score=98.55 Aligned_cols=186 Identities=16% Similarity=0.108 Sum_probs=157.4
Q ss_pred CCCHHHHHHHHHHHHHhhCCchhHHHHHHcCCHHHHHHHHccCCCHHHHHHHHHHHHHhhcC-chhHHHHHhcCccHHHH
Q 006114 418 SEDPDVQIHAVKVVANLAAEDINQEKIVEEGGLDALLLLLRTSQNTTILRVASGAIANLAMN-EMNQGLIMSRGGGQLLA 496 (660)
Q Consensus 418 s~d~~vr~~Aa~aL~nLa~~~en~~~Ive~GgI~~Lv~LL~~s~d~~v~~~Aa~AL~nLA~~-~~n~~~Ive~g~I~~Ll 496 (660)
+.+.+-+..|.--|..++.+-+|..-++..||..+|+..+. ++++.+|..|+++|+.++.+ |..+..+++.|+++.|+
T Consensus 94 s~~le~ke~ald~Le~lve~iDnAndl~~~ggl~~ll~~l~-~~~~~lR~~Aa~Vigt~~qNNP~~Qe~v~E~~~L~~Ll 172 (342)
T KOG2160|consen 94 SVDLEDKEDALDNLEELVEDIDNANDLISLGGLVPLLGYLE-NSDAELRELAARVIGTAVQNNPKSQEQVIELGALSKLL 172 (342)
T ss_pred cCCHHHHHHHHHHHHHHHHhhhhHHhHhhccCHHHHHHHhc-CCcHHHHHHHHHHHHHHHhcCHHHHHHHHHcccHHHHH
Confidence 44677888899889889998899999999999999999887 88999999999999999976 99999999999999999
Q ss_pred HhhcCCCCHHHHHHHHHHHHHHh-cChhHHHHHHhccHHHHHHHHhcC--CCHHHHHHHHHHHHHhhccchhhhhhcchh
Q 006114 497 KTASKTDDPQTLRMVAGALANLC-GNEKLHTMLEEDGAIKALLAMVRS--GNIDVIAQVARGLANFAKCESRAIVQGQRK 573 (660)
Q Consensus 497 ~LL~~s~d~~v~~~Aa~aLanLa-~~~~~r~~iv~~G~V~~Lv~lL~s--~~~~v~~~Al~aLanLA~~~~~~~aq~~~e 573 (660)
..+..+.+..++..|..||+.+. .++.+...+...+|...|..++.+ .+..++..|+..++.+...+ +.
T Consensus 173 ~~ls~~~~~~~r~kaL~AissLIRn~~~g~~~fl~~~G~~~L~~vl~~~~~~~~lkrK~~~Ll~~Ll~~~--------~s 244 (342)
T KOG2160|consen 173 KILSSDDPNTVRTKALFAISSLIRNNKPGQDEFLKLNGYQVLRDVLQSNNTSVKLKRKALFLLSLLLQED--------KS 244 (342)
T ss_pred HHHccCCCchHHHHHHHHHHHHHhcCcHHHHHHHhcCCHHHHHHHHHcCCcchHHHHHHHHHHHHHHHhh--------hh
Confidence 99987666677789999999998 778899999999999999999998 56778888999999988543 23
Q ss_pred hhHHHhhcChHHHHHHhhcCCCHHHHHHHHHHHHHhhcC
Q 006114 574 GRSHLMEDSALEWLIANSKTNSASTRRHVELALCHLAQN 612 (660)
Q Consensus 574 ~r~~Li~~G~v~~Lv~lL~s~d~~vr~~Aa~AL~nLa~~ 612 (660)
.+..+...|....+..+..+.+..+.++|..++..+...
T Consensus 245 ~~d~~~~~~f~~~~~~l~~~l~~~~~e~~l~~~l~~l~~ 283 (342)
T KOG2160|consen 245 DEDIASSLGFQRVLENLISSLDFEVNEAALTALLSLLSE 283 (342)
T ss_pred hhhHHHHhhhhHHHHHHhhccchhhhHHHHHHHHHHHHH
Confidence 334455566666777777778889999998888877553
No 31
>PF03224 V-ATPase_H_N: V-ATPase subunit H; InterPro: IPR004908 ATPases (or ATP synthases) are membrane-bound enzyme complexes/ion transporters that combine ATP synthesis and/or hydrolysis with the transport of protons across a membrane. ATPases can harness the energy from a proton gradient, using the flux of ions across the membrane via the ATPase proton channel to drive the synthesis of ATP. Some ATPases work in reverse, using the energy from the hydrolysis of ATP to create a proton gradient. There are different types of ATPases, which can differ in function (ATP synthesis and/or hydrolysis), structure (e.g., F-, V- and A-ATPases, which contain rotary motors) and in the type of ions they transport [, ]. The different types include: F-ATPases (F1F0-ATPases), which are found in mitochondria, chloroplasts and bacterial plasma membranes where they are the prime producers of ATP, using the proton gradient generated by oxidative phosphorylation (mitochondria) or photosynthesis (chloroplasts). V-ATPases (V1V0-ATPases), which are primarily found in eukaryotic vacuoles and catalyse ATP hydrolysis to transport solutes and lower pH in organelles. A-ATPases (A1A0-ATPases), which are found in Archaea and function like F-ATPases (though with respect to their structure and some inhibitor responses, A-ATPases are more closely related to the V-ATPases). P-ATPases (E1E2-ATPases), which are found in bacteria and in eukaryotic plasma membranes and organelles, and function to transport a variety of different ions across membranes. E-ATPases, which are cell-surface enzymes that hydrolyse a range of NTPs, including extracellular ATP. V-ATPases (also known as V1V0-ATPase or vacuolar ATPase) (3.6.3.14 from EC) are found in the eukaryotic endomembrane system, and in the plasma membrane of prokaryotes and certain specialised eukaryotic cells. V-ATPases hydrolyse ATP to drive a proton pump, and are involved in a variety of vital intra- and inter-cellular processes such as receptor mediated endocytosis, protein trafficking, active transport of metabolites, homeostasis and neurotransmitter release []. V-ATPases are composed of two linked complexes: the V1 complex (subunits A-H) contains the catalytic core that hydrolyses ATP, while the V0 complex (subunits a, c, c', c'', d) forms the membrane-spanning pore. V-ATPases may have an additional role in membrane fusion through binding to t-SNARE proteins []. This entry represents subunit H (also known as Vma13p) found in the V1 complex of V-ATPases. This subunit has a regulatory function, being responsible for activating ATPase activity and coupling ATPase activity to proton flow []. The yeast enzyme contains five motifs similar to the HEAT or Armadillo repeats seen in the importins, and can be divided into two distinct domains: a large N-terminal domain consisting of stacked alpha helices, and a smaller C-terminal alpha-helical domain with a similar superhelical topology to an armadillo repeat []. More information about this protein can be found at Protein of the Month: ATP Synthases [].; GO: 0046961 proton-transporting ATPase activity, rotational mechanism, 0015991 ATP hydrolysis coupled proton transport, 0000221 vacuolar proton-transporting V-type ATPase, V1 domain; PDB: 1HO8_A.
Probab=98.84 E-value=1.2e-07 Score=101.43 Aligned_cols=187 Identities=16% Similarity=0.131 Sum_probs=142.0
Q ss_pred CHHHHHHhhCCCCHHHHHHHHHHHHHhhCCchhHHHHHHcCCHHHHHHHHccC---CCHHHHHHHHHHHHHhhcCchhHH
Q 006114 408 GLPKILQLLTSEDPDVQIHAVKVVANLAAEDINQEKIVEEGGLDALLLLLRTS---QNTTILRVASGAIANLAMNEMNQG 484 (660)
Q Consensus 408 gI~~LV~LL~s~d~~vr~~Aa~aL~nLa~~~en~~~Ive~GgI~~Lv~LL~~s---~d~~v~~~Aa~AL~nLA~~~~n~~ 484 (660)
...+++.++.++|..++..|+.+|+.|+............+.++.++..|.+. ++..++..|+.+|.+|...+..|.
T Consensus 106 ~~~~fl~ll~~~D~~i~~~a~~iLt~Ll~~~~~~~~~~~~~~l~~ll~~L~~~l~~~~~~~~~~av~~L~~LL~~~~~R~ 185 (312)
T PF03224_consen 106 PYSPFLKLLDRNDSFIQLKAAFILTSLLSQGPKRSEKLVKEALPKLLQWLSSQLSSSDSELQYIAVQCLQNLLRSKEYRQ 185 (312)
T ss_dssp -HHHHHHH-S-SSHHHHHHHHHHHHHHHTSTTT--HHHHHHHHHHHHHHHH-TT-HHHH---HHHHHHHHHHHTSHHHHH
T ss_pred hHHHHHHHhcCCCHHHHHHHHHHHHHHHHcCCccccchHHHHHHHHHHHHHHhhcCCCcchHHHHHHHHHHHhCcchhHH
Confidence 57788899999999999999999999888443333332245678888888742 344567889999999999999999
Q ss_pred HHHhcCccHHHHHhh------cCCCCHHHHHHHHHHHHHHhcChhHHHHHHhccHHHHHHHHhc-CCCHHHHHHHHHHHH
Q 006114 485 LIMSRGGGQLLAKTA------SKTDDPQTLRMVAGALANLCGNEKLHTMLEEDGAIKALLAMVR-SGNIDVIAQVARGLA 557 (660)
Q Consensus 485 ~Ive~g~I~~Ll~LL------~~s~d~~v~~~Aa~aLanLa~~~~~r~~iv~~G~V~~Lv~lL~-s~~~~v~~~Al~aLa 557 (660)
.+.+.|+++.+..++ .++.+++++..++.++|-|+.+++....+...+.|+.|+.+++ +.-..|.+-++++|.
T Consensus 186 ~f~~~~~v~~l~~iL~~~~~~~~~~~~Ql~Y~~ll~lWlLSF~~~~~~~~~~~~~i~~L~~i~~~~~KEKvvRv~la~l~ 265 (312)
T PF03224_consen 186 VFWKSNGVSPLFDILRKQATNSNSSGIQLQYQALLCLWLLSFEPEIAEELNKKYLIPLLADILKDSIKEKVVRVSLAILR 265 (312)
T ss_dssp HHHTHHHHHHHHHHHH---------HHHHHHHHHHHHHHHTTSHHHHHHHHTTSHHHHHHHHHHH--SHHHHHHHHHHHH
T ss_pred HHHhcCcHHHHHHHHHhhcccCCCCchhHHHHHHHHHHHHhcCHHHHHHHhccchHHHHHHHHHhcccchHHHHHHHHHH
Confidence 999999999999999 5567789999999999999999999999999999999999998 556789999999999
Q ss_pred HhhccchhhhhhcchhhhHHHhhcChHHHHHHhhcC--CCHHHHHH
Q 006114 558 NFAKCESRAIVQGQRKGRSHLMEDSALEWLIANSKT--NSASTRRH 601 (660)
Q Consensus 558 nLA~~~~~~~aq~~~e~r~~Li~~G~v~~Lv~lL~s--~d~~vr~~ 601 (660)
||+..++. .....++..|+++.+-.+... .|+.+..-
T Consensus 266 Nl~~~~~~-------~~~~~mv~~~~l~~l~~L~~rk~~Dedl~ed 304 (312)
T PF03224_consen 266 NLLSKAPK-------SNIELMVLCGLLKTLQNLSERKWSDEDLTED 304 (312)
T ss_dssp HTTSSSST-------THHHHHHHH-HHHHHHHHHSS--SSHHHHHH
T ss_pred HHHhccHH-------HHHHHHHHccHHHHHHHHhcCCCCCHHHHHH
Confidence 99977542 144557777777777766654 36666544
No 32
>KOG3678 consensus SARM protein (with sterile alpha and armadillo motifs) [Extracellular structures]
Probab=98.82 E-value=6.6e-08 Score=104.43 Aligned_cols=186 Identities=22% Similarity=0.284 Sum_probs=154.7
Q ss_pred HHHHHHcCCHHHHHHHHccCCCH--HHHHHHHHHHHHhhcCchhHHHHHhcCccHHHHHhhcCCCCHHHHHHHHHHHHHH
Q 006114 441 QEKIVEEGGLDALLLLLRTSQNT--TILRVASGAIANLAMNEMNQGLIMSRGGGQLLAKTASKTDDPQTLRMVAGALANL 518 (660)
Q Consensus 441 ~~~Ive~GgI~~Lv~LL~~s~d~--~v~~~Aa~AL~nLA~~~~n~~~Ive~g~I~~Ll~LL~~s~d~~v~~~Aa~aLanL 518 (660)
+..|...||++.|+.++. +++. .|+..|+..|..+. ..+|++.++..| ...++.+.+....++..+.+++.|.+|
T Consensus 173 CD~iR~~~~lD~Llrmf~-aPn~et~vRve~~rlLEq~~-~aeN~d~va~~~-~~~Il~lAK~~e~~e~aR~~~~il~~m 249 (832)
T KOG3678|consen 173 CDAIRLDGGLDLLLRMFQ-APNLETSVRVEAARLLEQIL-VAENRDRVARIG-LGVILNLAKEREPVELARSVAGILEHM 249 (832)
T ss_pred hhHhhccchHHHHHHHHh-CCchhHHHHHHHHHHHHHHH-hhhhhhHHhhcc-chhhhhhhhhcCcHHHHHHHHHHHHHH
Confidence 577888899999999998 6654 45888888888764 367788888876 566666666678889999999999999
Q ss_pred h-cChhHHHHHHhccHHHHHHHHhcCCCHHHHHHHHHHHHHhhccchhhhhhcchhhhHHHhhcChHHHHHHhhcCCCHH
Q 006114 519 C-GNEKLHTMLEEDGAIKALLAMVRSGNIDVIAQVARGLANFAKCESRAIVQGQRKGRSHLMEDSALEWLIANSKTNSAS 597 (660)
Q Consensus 519 a-~~~~~r~~iv~~G~V~~Lv~lL~s~~~~v~~~Al~aLanLA~~~~~~~aq~~~e~r~~Li~~G~v~~Lv~lL~s~d~~ 597 (660)
- ++.+.+..++..||++.++-..+..+|.+...|+.+|+|++.+. .-+++..|++..+..||..+..+.|+-
T Consensus 250 FKHSeet~~~Lvaa~~lD~vl~~~rRt~P~lLRH~ALAL~N~~L~~-------~~a~qrrmveKr~~EWLF~LA~skDel 322 (832)
T KOG3678|consen 250 FKHSEETCQRLVAAGGLDAVLYWCRRTDPALLRHCALALGNCALHG-------GQAVQRRMVEKRAAEWLFPLAFSKDEL 322 (832)
T ss_pred hhhhHHHHHHHHhhcccchheeecccCCHHHHHHHHHHhhhhhhhc-------hhHHHHHHHHhhhhhhhhhhhcchHHH
Confidence 8 88899999999999999999999999999999999999999763 346677889999999999999999999
Q ss_pred HHHHHHHHHHHhhcCCccHHHHHhcCcHHHHHHHHhcCC
Q 006114 598 TRRHVELALCHLAQNEDNARDFISRGGAKELVQISIESS 636 (660)
Q Consensus 598 vr~~Aa~AL~nLa~~~e~~~~Ive~G~l~~Lv~lL~s~s 636 (660)
+|-+||.|++.|+.+.+.-..+-+.|.+...--++.+-+
T Consensus 323 ~R~~AClAV~vlat~KE~E~~VrkS~TlaLVEPlva~~D 361 (832)
T KOG3678|consen 323 LRLHACLAVAVLATNKEVEREVRKSGTLALVEPLVASLD 361 (832)
T ss_pred HHHHHHHHHhhhhhhhhhhHHHhhccchhhhhhhhhccC
Confidence 999999999999998877777777666554444444433
No 33
>PRK13800 putative oxidoreductase/HEAT repeat-containing protein; Provisional
Probab=98.81 E-value=2.7e-07 Score=111.79 Aligned_cols=244 Identities=17% Similarity=0.108 Sum_probs=129.9
Q ss_pred hhhhhhcccCCCccccccchhhhhhcCchhHHHHHhCCCHHHHHHhhCCCCHHHHHHHHHHHHHhhCCchhHHHHHHcCC
Q 006114 370 YISKGSSRFGAPMSLQKSNPSRELSGQRATIAKICDEVGLPKILQLLTSEDPDVQIHAVKVVANLAAEDINQEKIVEEGG 449 (660)
Q Consensus 370 ~i~~l~~~L~~~~~~vr~~~~~~laa~~~~~~~I~e~ggI~~LV~LL~s~d~~vr~~Aa~aL~nLa~~~en~~~Ive~Gg 449 (660)
.+..+...|.|.++.+|..+...++. +.....++.|+.+|.+++..||..|+.+|..+.... ..
T Consensus 622 ~~~~L~~~L~D~d~~VR~~Av~~L~~-------~~~~~~~~~L~~aL~D~d~~VR~~Aa~aL~~l~~~~---------~~ 685 (897)
T PRK13800 622 SVAELAPYLADPDPGVRRTAVAVLTE-------TTPPGFGPALVAALGDGAAAVRRAAAEGLRELVEVL---------PP 685 (897)
T ss_pred hHHHHHHHhcCCCHHHHHHHHHHHhh-------hcchhHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcc---------Cc
Confidence 34444555555555555544444332 123456788888888888888888888887663211 11
Q ss_pred HHHHHHHHccCCCHHHHHHHHHHHHHhhcCch-------------hHHHH----HhcCccHHHHHhhcCCCCHHHHHHHH
Q 006114 450 LDALLLLLRTSQNTTILRVASGAIANLAMNEM-------------NQGLI----MSRGGGQLLAKTASKTDDPQTLRMVA 512 (660)
Q Consensus 450 I~~Lv~LL~~s~d~~v~~~Aa~AL~nLA~~~~-------------n~~~I----ve~g~I~~Ll~LL~~s~d~~v~~~Aa 512 (660)
.+.|..+|. ++|+.|+..|+.+|..+...+. .+... ...+..+.|+.++.+ +++.|+..++
T Consensus 686 ~~~L~~~L~-~~d~~VR~~A~~aL~~~~~~~~~~l~~~L~D~d~~VR~~Av~aL~~~~~~~~l~~~l~D-~~~~VR~~aa 763 (897)
T PRK13800 686 APALRDHLG-SPDPVVRAAALDVLRALRAGDAALFAAALGDPDHRVRIEAVRALVSVDDVESVAGAATD-ENREVRIAVA 763 (897)
T ss_pred hHHHHHHhc-CCCHHHHHHHHHHHHhhccCCHHHHHHHhcCCCHHHHHHHHHHHhcccCcHHHHHHhcC-CCHHHHHHHH
Confidence 244555554 4555666655555554421100 00000 001122334444433 4555555555
Q ss_pred HHHHHHhcChhHHHHHHhccHHHHHHHHhcCCCHHHHHHHHHHHHHhhccchh--hh----hhcchhhhHHHh-------
Q 006114 513 GALANLCGNEKLHTMLEEDGAIKALLAMVRSGNIDVIAQVARGLANFAKCESR--AI----VQGQRKGRSHLM------- 579 (660)
Q Consensus 513 ~aLanLa~~~~~r~~iv~~G~V~~Lv~lL~s~~~~v~~~Al~aLanLA~~~~~--~~----aq~~~e~r~~Li------- 579 (660)
.+|..+... ..+.++.|..++.++++.|+..|+.+|+.+.....- .+ .......|...+
T Consensus 764 ~aL~~~~~~--------~~~~~~~L~~ll~D~d~~VR~aA~~aLg~~g~~~~~~~~l~~aL~d~d~~VR~~Aa~aL~~l~ 835 (897)
T PRK13800 764 KGLATLGAG--------GAPAGDAVRALTGDPDPLVRAAALAALAELGCPPDDVAAATAALRASAWQVRQGAARALAGAA 835 (897)
T ss_pred HHHHHhccc--------cchhHHHHHHHhcCCCHHHHHHHHHHHHhcCCcchhHHHHHHHhcCCChHHHHHHHHHHHhcc
Confidence 555554321 112367788888888888888888888877533210 00 000111122111
Q ss_pred hcChHHHHHHhhcCCCHHHHHHHHHHHHHhhcCCccHHHHHhcCcHHHHHHHHhcCChHHHHHHHHHHHh
Q 006114 580 EDSALEWLIANSKTNSASTRRHVELALCHLAQNEDNARDFISRGGAKELVQISIESSREDIRNLAKKTMK 649 (660)
Q Consensus 580 ~~G~v~~Lv~lL~s~d~~vr~~Aa~AL~nLa~~~e~~~~Ive~G~l~~Lv~lL~s~s~~~ir~~A~~~L~ 649 (660)
....++.|+.+|.+++..||..|+++|..+..++ ...+.|...+.+ ++.++|..|.+.|.
T Consensus 836 ~~~a~~~L~~~L~D~~~~VR~~A~~aL~~~~~~~---------~a~~~L~~al~D-~d~~Vr~~A~~aL~ 895 (897)
T PRK13800 836 ADVAVPALVEALTDPHLDVRKAAVLALTRWPGDP---------AARDALTTALTD-SDADVRAYARRALA 895 (897)
T ss_pred ccchHHHHHHHhcCCCHHHHHHHHHHHhccCCCH---------HHHHHHHHHHhC-CCHHHHHHHHHHHh
Confidence 1345677777777777777777777777752111 245666666654 44556677766664
No 34
>KOG2160 consensus Armadillo/beta-catenin-like repeat-containing protein [Posttranslational modification, protein turnover, chaperones]
Probab=98.79 E-value=2.2e-07 Score=98.75 Aligned_cols=169 Identities=20% Similarity=0.217 Sum_probs=144.7
Q ss_pred hhcCchhHHHHHhCCCHHHHHHhhCCCCHHHHHHHHHHHHHhhC-CchhHHHHHHcCCHHHHHHHHccCCCHHHHHHHHH
Q 006114 393 LSGQRATIAKICDEVGLPKILQLLTSEDPDVQIHAVKVVANLAA-EDINQEKIVEEGGLDALLLLLRTSQNTTILRVASG 471 (660)
Q Consensus 393 laa~~~~~~~I~e~ggI~~LV~LL~s~d~~vr~~Aa~aL~nLa~-~~en~~~Ive~GgI~~Lv~LL~~s~d~~v~~~Aa~ 471 (660)
+.-+-.+...++.-||+++++..+.+.+..+|..|+++|+.++. +|..+..+++.||.+.|+..|.++.+..++..|..
T Consensus 110 lve~iDnAndl~~~ggl~~ll~~l~~~~~~lR~~Aa~Vigt~~qNNP~~Qe~v~E~~~L~~Ll~~ls~~~~~~~r~kaL~ 189 (342)
T KOG2160|consen 110 LVEDIDNANDLISLGGLVPLLGYLENSDAELRELAARVIGTAVQNNPKSQEQVIELGALSKLLKILSSDDPNTVRTKALF 189 (342)
T ss_pred HHHhhhhHHhHhhccCHHHHHHHhcCCcHHHHHHHHHHHHHHHhcCHHHHHHHHHcccHHHHHHHHccCCCchHHHHHHH
Confidence 45555667788899999999999999999999999999999999 79999999999999999999997777788899999
Q ss_pred HHHHhhcC-chhHHHHHhcCccHHHHHhhcCC-CCHHHHHHHHHHHHHHh-cChhHHHHHHhccHHHHHHHHhcCCCHHH
Q 006114 472 AIANLAMN-EMNQGLIMSRGGGQLLAKTASKT-DDPQTLRMVAGALANLC-GNEKLHTMLEEDGAIKALLAMVRSGNIDV 548 (660)
Q Consensus 472 AL~nLA~~-~~n~~~Ive~g~I~~Ll~LL~~s-~d~~v~~~Aa~aLanLa-~~~~~r~~iv~~G~V~~Lv~lL~s~~~~v 548 (660)
|++++..+ +.....+...+|...|..++..+ .++.+++-|+..|..+. ........+...|....++.+..+.+.++
T Consensus 190 AissLIRn~~~g~~~fl~~~G~~~L~~vl~~~~~~~~lkrK~~~Ll~~Ll~~~~s~~d~~~~~~f~~~~~~l~~~l~~~~ 269 (342)
T KOG2160|consen 190 AISSLIRNNKPGQDEFLKLNGYQVLRDVLQSNNTSVKLKRKALFLLSLLLQEDKSDEDIASSLGFQRVLENLISSLDFEV 269 (342)
T ss_pred HHHHHHhcCcHHHHHHHhcCCHHHHHHHHHcCCcchHHHHHHHHHHHHHHHhhhhhhhHHHHhhhhHHHHHHhhccchhh
Confidence 99999987 88899999999999999999764 56778888999999987 45555556666677777888888888888
Q ss_pred HHHHHHHHHHhhc
Q 006114 549 IAQVARGLANFAK 561 (660)
Q Consensus 549 ~~~Al~aLanLA~ 561 (660)
...|+.++..+..
T Consensus 270 ~e~~l~~~l~~l~ 282 (342)
T KOG2160|consen 270 NEAALTALLSLLS 282 (342)
T ss_pred hHHHHHHHHHHHH
Confidence 8888888866553
No 35
>KOG0168 consensus Putative ubiquitin fusion degradation protein [Posttranslational modification, protein turnover, chaperones]
Probab=98.78 E-value=1.2e-07 Score=108.56 Aligned_cols=216 Identities=17% Similarity=0.150 Sum_probs=171.0
Q ss_pred HHHHHHhhCCC-CHHHHHHHHHHHHH-hhC-CchhHHHHHHcCCHHHHHHHHccCCCHHHHHHHHHHHHHhhcC-chhHH
Q 006114 409 LPKILQLLTSE-DPDVQIHAVKVVAN-LAA-EDINQEKIVEEGGLDALLLLLRTSQNTTILRVASGAIANLAMN-EMNQG 484 (660)
Q Consensus 409 I~~LV~LL~s~-d~~vr~~Aa~aL~n-La~-~~en~~~Ive~GgI~~Lv~LL~~s~d~~v~~~Aa~AL~nLA~~-~~n~~ 484 (660)
+..|+.-|+.. |+..+..|+.-|+. |.. +++.-..|.-.-.||.|+.+|+...+.+++-.||+||.+|+.. |....
T Consensus 169 ~kkLL~gL~~~~Des~Qleal~Elce~L~mgnEesLs~fpv~slvp~Lv~LL~~E~n~DIMl~AcRaltyl~evlP~S~a 248 (1051)
T KOG0168|consen 169 AKKLLQGLQAESDESQQLEALTELCEMLSMGNEESLSGFPVKSLVPVLVALLSHEHNFDIMLLACRALTYLCEVLPRSSA 248 (1051)
T ss_pred HHHHHHhccccCChHHHHHHHHHHHHHHhhcchhhhccccHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHhhccchhh
Confidence 56666666654 88888888777775 444 5544444444457999999999778999999999999999977 88899
Q ss_pred HHHhcCccHHHHHhhcCCCCHHHHHHHHHHHHHHhcChhHHHHHHhccHHHHHHHHhcCCCHHHHHHHHHHHHHhhccch
Q 006114 485 LIMSRGGGQLLAKTASKTDDPQTLRMVAGALANLCGNEKLHTMLEEDGAIKALLAMVRSGNIDVIAQVARGLANFAKCES 564 (660)
Q Consensus 485 ~Ive~g~I~~Ll~LL~~s~d~~v~~~Aa~aLanLa~~~~~r~~iv~~G~V~~Lv~lL~s~~~~v~~~Al~aLanLA~~~~ 564 (660)
.+|+.++||.|+.-|..-...+|...++.||-.|+.... ..+..+|++.+.+.+++-....++..|+.+.+|+|..=+
T Consensus 249 ~vV~~~aIPvl~~kL~~IeyiDvAEQ~LqALE~iSR~H~--~AiL~AG~l~a~LsylDFFSi~aQR~AlaiaaN~Cksi~ 326 (1051)
T KOG0168|consen 249 IVVDEHAIPVLLEKLLTIEYIDVAEQSLQALEKISRRHP--KAILQAGALSAVLSYLDFFSIHAQRVALAIAANCCKSIR 326 (1051)
T ss_pred eeecccchHHHHHhhhhhhhhHHHHHHHHHHHHHHhhcc--HHHHhcccHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCC
Confidence 999999999999877666888999999999999995332 467899999999999999999999999999999996421
Q ss_pred hhhhhcchhhhHHHhhcChHHHHHHhhcCCCHHHHHHHHHHHHHhhc----CCccHHHHHhcCcHHHHHHHHhcC
Q 006114 565 RAIVQGQRKGRSHLMEDSALEWLIANSKTNSASTRRHVELALCHLAQ----NEDNARDFISRGGAKELVQISIES 635 (660)
Q Consensus 565 ~~~aq~~~e~r~~Li~~G~v~~Lv~lL~s~d~~vr~~Aa~AL~nLa~----~~e~~~~Ive~G~l~~Lv~lL~s~ 635 (660)
++.=..+ ..++|.|.++|...|.++...++.+++.++. .++....+...|.|.....++.-.
T Consensus 327 -------sd~f~~v--~ealPlL~~lLs~~D~k~ies~~ic~~ri~d~f~h~~~kLdql~s~dLi~~~~qLlsvt 392 (1051)
T KOG0168|consen 327 -------SDEFHFV--MEALPLLTPLLSYQDKKPIESVCICLTRIADGFQHGPDKLDQLCSHDLITNIQQLLSVT 392 (1051)
T ss_pred -------CccchHH--HHHHHHHHHHHhhccchhHHHHHHHHHHHHHhcccChHHHHHHhchhHHHHHHHHHhcC
Confidence 1111122 3589999999999999999999999998864 335567778888888777777543
No 36
>PRK13800 putative oxidoreductase/HEAT repeat-containing protein; Provisional
Probab=98.76 E-value=3.4e-07 Score=110.88 Aligned_cols=120 Identities=22% Similarity=0.173 Sum_probs=73.3
Q ss_pred HHHHHHHHccCCCHHHHHHHHHHHHHhhcCchhHHHHHhcCccHHHHHhhcCCCCHHHHHHHHHHHHHHhcChhHHHHHH
Q 006114 450 LDALLLLLRTSQNTTILRVASGAIANLAMNEMNQGLIMSRGGGQLLAKTASKTDDPQTLRMVAGALANLCGNEKLHTMLE 529 (660)
Q Consensus 450 I~~Lv~LL~~s~d~~v~~~Aa~AL~nLA~~~~n~~~Ive~g~I~~Ll~LL~~s~d~~v~~~Aa~aLanLa~~~~~r~~iv 529 (660)
++.|..++. ++|+.|+..|+.+|+.+...+. +++.++..|.+ +++.|+..|+.+|..+..
T Consensus 777 ~~~L~~ll~-D~d~~VR~aA~~aLg~~g~~~~---------~~~~l~~aL~d-~d~~VR~~Aa~aL~~l~~--------- 836 (897)
T PRK13800 777 GDAVRALTG-DPDPLVRAAALAALAELGCPPD---------DVAAATAALRA-SAWQVRQGAARALAGAAA--------- 836 (897)
T ss_pred HHHHHHHhc-CCCHHHHHHHHHHHHhcCCcch---------hHHHHHHHhcC-CChHHHHHHHHHHHhccc---------
Confidence 344555554 4455555555555555422111 12334444443 455555555555544321
Q ss_pred hccHHHHHHHHhcCCCHHHHHHHHHHHHHhhccchhhhhhcchhhhHHHhhcChHHHHHHhhcCCCHHHHHHHHHHHHH
Q 006114 530 EDGAIKALLAMVRSGNIDVIAQVARGLANFAKCESRAIVQGQRKGRSHLMEDSALEWLIANSKTNSASTRRHVELALCH 608 (660)
Q Consensus 530 ~~G~V~~Lv~lL~s~~~~v~~~Al~aLanLA~~~~~~~aq~~~e~r~~Li~~G~v~~Lv~lL~s~d~~vr~~Aa~AL~n 608 (660)
...++.|+.++.++++.|+..|+.+|+.+.. + ...++.|...+.+.|+.||..|..+|.+
T Consensus 837 -~~a~~~L~~~L~D~~~~VR~~A~~aL~~~~~-~-----------------~~a~~~L~~al~D~d~~Vr~~A~~aL~~ 896 (897)
T PRK13800 837 -DVAVPALVEALTDPHLDVRKAAVLALTRWPG-D-----------------PAARDALTTALTDSDADVRAYARRALAH 896 (897)
T ss_pred -cchHHHHHHHhcCCCHHHHHHHHHHHhccCC-C-----------------HHHHHHHHHHHhCCCHHHHHHHHHHHhh
Confidence 2355777788888888888888888877631 1 2357788899999999999999999864
No 37
>KOG4646 consensus Uncharacterized conserved protein, contains ARM repeats [Function unknown]
Probab=98.72 E-value=8.5e-08 Score=88.85 Aligned_cols=152 Identities=16% Similarity=0.161 Sum_probs=126.3
Q ss_pred CCHHHHHHHHccCCCHHHHHHHHHHHHHhhcCchhHHHHHhcCccHHHHHhhcCCCCHHHHHHHHHHHHHHhcChhHHHH
Q 006114 448 GGLDALLLLLRTSQNTTILRVASGAIANLAMNEMNQGLIMSRGGGQLLAKTASKTDDPQTLRMVAGALANLCGNEKLHTM 527 (660)
Q Consensus 448 GgI~~Lv~LL~~s~d~~v~~~Aa~AL~nLA~~~~n~~~Ive~g~I~~Ll~LL~~s~d~~v~~~Aa~aLanLa~~~~~r~~ 527 (660)
+.+..|+.-+.+..+.+.++....-|+|+|.+|.|-..+...++++.++..|.. ++..+...+.++|||+|.++.+...
T Consensus 16 ~Ylq~LV~efq~tt~~eakeqv~ANLANFAYDP~Nys~Lrql~vLdlFvdsl~e-~ne~LvefgIgglCNlC~d~~n~~~ 94 (173)
T KOG4646|consen 16 EYLQHLVDEFQTTTNIEAKEQVTANLANFAYDPINYSHLRQLDVLDLFVDSLEE-QNELLVEFGIGGLCNLCLDKTNAKF 94 (173)
T ss_pred HHHHHHHHHHHHhccHHHHHHHHHHHHhhccCcchHHHHHHhhHHHHHHHHhhc-ccHHHHHHhHHHHHhhccChHHHHH
Confidence 346677777777889999999999999999999999999999999999999975 7888999999999999999999999
Q ss_pred HHhccHHHHHHHHhcCCCHHHHHHHHHHHHHhhccchhhhhhcchhhhHHHhhcChHHHHHHhhcCCCHHHHHHHHHHHH
Q 006114 528 LEEDGAIKALLAMVRSGNIDVIAQVARGLANFAKCESRAIVQGQRKGRSHLMEDSALEWLIANSKTNSASTRRHVELALC 607 (660)
Q Consensus 528 iv~~G~V~~Lv~lL~s~~~~v~~~Al~aLanLA~~~~~~~aq~~~e~r~~Li~~G~v~~Lv~lL~s~d~~vr~~Aa~AL~ 607 (660)
|++.||+|.++..+.++...+...|+.++..++..+ +.-|..+....++..+.+.-.+.+...|..|..+|-
T Consensus 95 I~ea~g~plii~~lssp~e~tv~sa~~~l~~l~~~~--------Rt~r~ell~p~Vv~~v~r~~~s~s~~~rnLa~~fl~ 166 (173)
T KOG4646|consen 95 IREALGLPLIIFVLSSPPEITVHSAALFLQLLEFGE--------RTERDELLSPAVVRTVQRWRESKSHDERNLASAFLD 166 (173)
T ss_pred HHHhcCCceEEeecCCChHHHHHHHHHHHHHhcCcc--------cchhHHhccHHHHHHHHHHHHHhhHHHHHHHHHHHH
Confidence 999999999999999999999999999999999653 445666666666666655554445555555555554
Q ss_pred H
Q 006114 608 H 608 (660)
Q Consensus 608 n 608 (660)
.
T Consensus 167 ~ 167 (173)
T KOG4646|consen 167 K 167 (173)
T ss_pred h
Confidence 3
No 38
>KOG0168 consensus Putative ubiquitin fusion degradation protein [Posttranslational modification, protein turnover, chaperones]
Probab=98.71 E-value=3.5e-07 Score=104.78 Aligned_cols=223 Identities=16% Similarity=0.116 Sum_probs=178.5
Q ss_pred HHhCCCHHHHHHhhCCC-CHHHHHHHHHHHHHhhC-CchhHHHHHHcCCHHHHHHHHccCCCHHHHHHHHHHHHHhhcCc
Q 006114 403 ICDEVGLPKILQLLTSE-DPDVQIHAVKVVANLAA-EDINQEKIVEEGGLDALLLLLRTSQNTTILRVASGAIANLAMNE 480 (660)
Q Consensus 403 I~e~ggI~~LV~LL~s~-d~~vr~~Aa~aL~nLa~-~~en~~~Ive~GgI~~Lv~LL~~s~d~~v~~~Aa~AL~nLA~~~ 480 (660)
|.-.-.+|.|+.+|+.+ +.++...||++|.+|+. -|.....+++.++||.|+.-|..-.-.+|.+.++.||-.|+..
T Consensus 207 fpv~slvp~Lv~LL~~E~n~DIMl~AcRaltyl~evlP~S~a~vV~~~aIPvl~~kL~~IeyiDvAEQ~LqALE~iSR~- 285 (1051)
T KOG0168|consen 207 FPVKSLVPVLVALLSHEHNFDIMLLACRALTYLCEVLPRSSAIVVDEHAIPVLLEKLLTIEYIDVAEQSLQALEKISRR- 285 (1051)
T ss_pred ccHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHhhccchhheeecccchHHHHHhhhhhhhhHHHHHHHHHHHHHHhh-
Confidence 33445699999999864 78999999999999999 8999999999999999998887677888999999999999764
Q ss_pred hhHHHHHhcCccHHHHHhhcCCCCHHHHHHHHHHHHHHh--cChhHHHHHHhccHHHHHHHHhcCCCHHHHHHHHHHHHH
Q 006114 481 MNQGLIMSRGGGQLLAKTASKTDDPQTLRMVAGALANLC--GNEKLHTMLEEDGAIKALLAMVRSGNIDVIAQVARGLAN 558 (660)
Q Consensus 481 ~n~~~Ive~g~I~~Ll~LL~~s~d~~v~~~Aa~aLanLa--~~~~~r~~iv~~G~V~~Lv~lL~s~~~~v~~~Al~aLan 558 (660)
+-..|...|++.+.+..|. .....+++.|..+.+|+| ..++--..+++ ++|.|..++...+..+...++-++..
T Consensus 286 -H~~AiL~AG~l~a~LsylD-FFSi~aQR~AlaiaaN~Cksi~sd~f~~v~e--alPlL~~lLs~~D~k~ies~~ic~~r 361 (1051)
T KOG0168|consen 286 -HPKAILQAGALSAVLSYLD-FFSIHAQRVALAIAANCCKSIRSDEFHFVME--ALPLLTPLLSYQDKKPIESVCICLTR 361 (1051)
T ss_pred -ccHHHHhcccHHHHHHHHH-HHHHHHHHHHHHHHHHHHhcCCCccchHHHH--HHHHHHHHHhhccchhHHHHHHHHHH
Confidence 3358999999999999884 567889999999999999 23333334443 79999999999999999999999999
Q ss_pred hhccchhhhhhcchhhhHHHhhcChHHHHHHhhcCCC----HHHHHHHHHHHHHhhcCC-ccHHHHHhcCcHHHHHHHHh
Q 006114 559 FAKCESRAIVQGQRKGRSHLMEDSALEWLIANSKTNS----ASTRRHVELALCHLAQNE-DNARDFISRGGAKELVQISI 633 (660)
Q Consensus 559 LA~~~~~~~aq~~~e~r~~Li~~G~v~~Lv~lL~s~d----~~vr~~Aa~AL~nLa~~~-e~~~~Ive~G~l~~Lv~lL~ 633 (660)
++..-. ..+.--..+...|.|..+..++.-.. ..+.......|..||++. -....+.+.|+...|..++.
T Consensus 362 i~d~f~-----h~~~kLdql~s~dLi~~~~qLlsvt~t~Ls~~~~~~vIrmls~msS~~pl~~~tl~k~~I~~~L~~il~ 436 (1051)
T KOG0168|consen 362 IADGFQ-----HGPDKLDQLCSHDLITNIQQLLSVTPTILSNGTYTGVIRMLSLMSSGSPLLFRTLLKLDIADTLKRILQ 436 (1051)
T ss_pred HHHhcc-----cChHHHHHHhchhHHHHHHHHHhcCcccccccchhHHHHHHHHHccCChHHHHHHHHhhHHHHHHHHHh
Confidence 874311 12334455777899988888876543 446677788888888874 56677788999999999887
Q ss_pred cC
Q 006114 634 ES 635 (660)
Q Consensus 634 s~ 635 (660)
..
T Consensus 437 g~ 438 (1051)
T KOG0168|consen 437 GY 438 (1051)
T ss_pred cc
Confidence 54
No 39
>KOG3678 consensus SARM protein (with sterile alpha and armadillo motifs) [Extracellular structures]
Probab=98.71 E-value=1.2e-06 Score=95.01 Aligned_cols=244 Identities=18% Similarity=0.259 Sum_probs=173.0
Q ss_pred HHHHhCCCHHHHHHhhCCCCHH--HHHHHHHHHHHhhCCchhHHHHHHcCCHHHHHHHHccCCCHHHHHHHHHHHHHhhc
Q 006114 401 AKICDEVGLPKILQLLTSEDPD--VQIHAVKVVANLAAEDINQEKIVEEGGLDALLLLLRTSQNTTILRVASGAIANLAM 478 (660)
Q Consensus 401 ~~I~e~ggI~~LV~LL~s~d~~--vr~~Aa~aL~nLa~~~en~~~Ive~GgI~~Lv~LL~~s~d~~v~~~Aa~AL~nLA~ 478 (660)
..|...||+..|+.++.+++.+ ||..|+.+|-.|.. .+|+..|+..| +..++.+-+....++..+.++++|.++..
T Consensus 174 D~iR~~~~lD~Llrmf~aPn~et~vRve~~rlLEq~~~-aeN~d~va~~~-~~~Il~lAK~~e~~e~aR~~~~il~~mFK 251 (832)
T KOG3678|consen 174 DAIRLDGGLDLLLRMFQAPNLETSVRVEAARLLEQILV-AENRDRVARIG-LGVILNLAKEREPVELARSVAGILEHMFK 251 (832)
T ss_pred hHhhccchHHHHHHHHhCCchhHHHHHHHHHHHHHHHh-hhhhhHHhhcc-chhhhhhhhhcCcHHHHHHHHHHHHHHhh
Confidence 4566789999999999998764 58888888876544 45778888775 55555555556678899999999999998
Q ss_pred C-chhHHHHHhcCccHHHHHhhcCCCCHHHHHHHHHHHHHHh--cChhHHHHHHhccHHHHHHHHhcCCCHHHHHHHHHH
Q 006114 479 N-EMNQGLIMSRGGGQLLAKTASKTDDPQTLRMVAGALANLC--GNEKLHTMLEEDGAIKALLAMVRSGNIDVIAQVARG 555 (660)
Q Consensus 479 ~-~~n~~~Ive~g~I~~Ll~LL~~s~d~~v~~~Aa~aLanLa--~~~~~r~~iv~~G~V~~Lv~lL~s~~~~v~~~Al~a 555 (660)
+ .+....++..|+++.++--... .+|.+++.++-+|+|++ .....+..|++..+...|+.+..+.+.-++..||.+
T Consensus 252 HSeet~~~Lvaa~~lD~vl~~~rR-t~P~lLRH~ALAL~N~~L~~~~a~qrrmveKr~~EWLF~LA~skDel~R~~AClA 330 (832)
T KOG3678|consen 252 HSEETCQRLVAAGGLDAVLYWCRR-TDPALLRHCALALGNCALHGGQAVQRRMVEKRAAEWLFPLAFSKDELLRLHACLA 330 (832)
T ss_pred hhHHHHHHHHhhcccchheeeccc-CCHHHHHHHHHHhhhhhhhchhHHHHHHHHhhhhhhhhhhhcchHHHHHHHHHHH
Confidence 8 7778889999999998887765 67999999999999998 567889999999999999999999988899999999
Q ss_pred HHHhhccch---hhhhhc-----------c---hhhhHHH---hh--cChHHHHHHhhcCCCHHHHHHHHHHHHHhhc--
Q 006114 556 LANFAKCES---RAIVQG-----------Q---RKGRSHL---ME--DSALEWLIANSKTNSASTRRHVELALCHLAQ-- 611 (660)
Q Consensus 556 LanLA~~~~---~~~aq~-----------~---~e~r~~L---i~--~G~v~~Lv~lL~s~d~~vr~~Aa~AL~nLa~-- 611 (660)
++.|+.... .+...+ + +-.|++- .. ...+..|+.+|.+.--..+..+++-||.=+.
T Consensus 331 V~vlat~KE~E~~VrkS~TlaLVEPlva~~DP~~FARD~hd~aQG~~~d~LqRLvPlLdS~R~EAq~i~AF~l~~EAaIK 410 (832)
T KOG3678|consen 331 VAVLATNKEVEREVRKSGTLALVEPLVASLDPGRFARDAHDYAQGRGPDDLQRLVPLLDSNRLEAQCIGAFYLCAEAAIK 410 (832)
T ss_pred HhhhhhhhhhhHHHhhccchhhhhhhhhccCcchhhhhhhhhhccCChHHHHHhhhhhhcchhhhhhhHHHHHHHHHHHH
Confidence 998886532 111000 0 0011111 01 1245667777775544444434433332221
Q ss_pred CC-ccHHHHHhcCcHHHHHHHHhcCChHHHHHHHHHHH
Q 006114 612 NE-DNARDFISRGGAKELVQISIESSREDIRNLAKKTM 648 (660)
Q Consensus 612 ~~-e~~~~Ive~G~l~~Lv~lL~s~s~~~ir~~A~~~L 648 (660)
.. .....+-+-|+|..|.++..|+ ++.....|.+.|
T Consensus 411 s~Q~K~kVFseIGAIQaLKevaSS~-d~vaakfAseAL 447 (832)
T KOG3678|consen 411 SLQGKTKVFSEIGAIQALKEVASSP-DEVAAKFASEAL 447 (832)
T ss_pred HhccchhHHHHHHHHHHHHHHhcCc-hHHHHHHHHHHH
Confidence 12 3345566789999999999754 344445555554
No 40
>KOG2759 consensus Vacuolar H+-ATPase V1 sector, subunit H [Energy production and conversion]
Probab=98.70 E-value=2.5e-07 Score=99.59 Aligned_cols=193 Identities=16% Similarity=0.160 Sum_probs=151.4
Q ss_pred HHHhhC-CCCHHHHHHHHHHHHHhhCCchhHHHHHHcCCHHHHHHHH-ccCCCHHHHHHHHHHHHHhhcCchhHHHHHhc
Q 006114 412 ILQLLT-SEDPDVQIHAVKVVANLAAEDINQEKIVEEGGLDALLLLL-RTSQNTTILRVASGAIANLAMNEMNQGLIMSR 489 (660)
Q Consensus 412 LV~LL~-s~d~~vr~~Aa~aL~nLa~~~en~~~Ive~GgI~~Lv~LL-~~s~d~~v~~~Aa~AL~nLA~~~~n~~~Ive~ 489 (660)
|-..+. +.+......|+++|..+...++.|-.++.++|+..|+..+ .+..+-.++...+-|+|-|+.+|.....+...
T Consensus 161 l~~~l~~~~~~~~~~~~~rcLQ~ll~~~eyR~~~v~adg~~~l~~~l~s~~~~~QlQYqsifciWlLtFn~~~ae~~~~~ 240 (442)
T KOG2759|consen 161 LKEQLQSSTNNDYIQFAARCLQTLLRVDEYRYAFVIADGVSLLIRILASTKCGFQLQYQSIFCIWLLTFNPHAAEKLKRF 240 (442)
T ss_pred HHHHHhccCCCchHHHHHHHHHHHhcCcchhheeeecCcchhhHHHHhccCcchhHHHHHHHHHHHhhcCHHHHHHHhhc
Confidence 334444 4677888889999999999999999999999999999999 55568899999999999999999999888889
Q ss_pred CccHHHHHhhcCCCCHHHHHHHHHHHHHHhcCh-------hHHHHHHhccHHHHHHHH----------------------
Q 006114 490 GGGQLLAKTASKTDDPQTLRMVAGALANLCGNE-------KLHTMLEEDGAIKALLAM---------------------- 540 (660)
Q Consensus 490 g~I~~Ll~LL~~s~d~~v~~~Aa~aLanLa~~~-------~~r~~iv~~G~V~~Lv~l---------------------- 540 (660)
+.|+.|..+++++....|.+-+++++.|++..+ .....|+..++.+.+-.+
T Consensus 241 ~li~~L~~Ivk~~~KEKV~Rivlai~~Nll~k~~~~~~~k~~~~~mv~~~v~k~l~~L~~rkysDEDL~~di~~L~e~L~ 320 (442)
T KOG2759|consen 241 DLIQDLSDIVKESTKEKVTRIVLAIFRNLLDKGPDRETKKDIASQMVLCKVLKTLQSLEERKYSDEDLVDDIEFLTEKLK 320 (442)
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCchhhHHHHHHHHHHhcCchHHHHHHHhcCCCcHHHHHHHHHHHHHHH
Confidence 999999999998777889999999999998544 455566666665543322
Q ss_pred ------------------------------------------------------hc-CCCHHHHHHHHHHHHHhhccchh
Q 006114 541 ------------------------------------------------------VR-SGNIDVIAQVARGLANFAKCESR 565 (660)
Q Consensus 541 ------------------------------------------------------L~-s~~~~v~~~Al~aLanLA~~~~~ 565 (660)
|. +.+|.+..-||.-|+.+..
T Consensus 321 ~svq~LsSFDeY~sEl~sG~L~WSP~Hk~e~FW~eNa~rlnennyellkiL~~lLe~s~Dp~iL~VAc~DIge~Vr---- 396 (442)
T KOG2759|consen 321 NSVQDLSSFDEYKSELRSGRLEWSPVHKSEKFWRENADRLNENNYELLKILIKLLETSNDPIILCVACHDIGEYVR---- 396 (442)
T ss_pred HHHHhhccHHHHHHHHHhCCcCCCccccccchHHHhHHHHhhccHHHHHHHHHHHhcCCCCceeehhhhhHHHHHH----
Confidence 22 1123333333333333332
Q ss_pred hhhhcchhhhHHHhhcChHHHHHHhhcCCCHHHHHHHHHHHHHhhcC
Q 006114 566 AIVQGQRKGRSHLMEDSALEWLIANSKTNSASTRRHVELALCHLAQN 612 (660)
Q Consensus 566 ~~aq~~~e~r~~Li~~G~v~~Lv~lL~s~d~~vr~~Aa~AL~nLa~~ 612 (660)
.+|+|+..+...||=..++++++++|+.||-+|..|+..|-.+
T Consensus 397 ----~yP~gk~vv~k~ggKe~vM~Llnh~d~~Vry~ALlavQ~lm~~ 439 (442)
T KOG2759|consen 397 ----HYPEGKAVVEKYGGKERVMNLLNHEDPEVRYHALLAVQKLMVH 439 (442)
T ss_pred ----hCchHhHHHHHhchHHHHHHHhcCCCchHHHHHHHHHHHHHhh
Confidence 3578999999999999999999999999999999999877543
No 41
>KOG1222 consensus Kinesin associated protein KAP [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.69 E-value=6.7e-06 Score=89.62 Aligned_cols=269 Identities=16% Similarity=0.160 Sum_probs=189.6
Q ss_pred chhhhhhcccCCCccccccchhhh---hhcCchhHHHHHhCCCHHHHHHhhCCCCHHHHHHHHHHHHHhhCCchhHHHHH
Q 006114 369 DYISKGSSRFGAPMSLQKSNPSRE---LSGQRATIAKICDEVGLPKILQLLTSEDPDVQIHAVKVVANLAAEDINQEKIV 445 (660)
Q Consensus 369 g~i~~l~~~L~~~~~~vr~~~~~~---laa~~~~~~~I~e~ggI~~LV~LL~s~d~~vr~~Aa~aL~nLa~~~en~~~Iv 445 (660)
|-+.+++..+....+.++...++- ++.......+++..|-+|.|..+|.++.- .-.|..+|.+++.++..+..+.
T Consensus 345 ~iveKL~klfp~~h~dL~~~tl~LlfNlSFD~glr~KMv~~GllP~l~~ll~~d~~--~~iA~~~lYh~S~dD~~K~Mfa 422 (791)
T KOG1222|consen 345 GIVEKLLKLFPIQHPDLRKATLMLLFNLSFDSGLRPKMVNGGLLPHLASLLDSDTK--HGIALNMLYHLSCDDDAKAMFA 422 (791)
T ss_pred cHHHHHHHhcCCCCHHHHHHHHHHhhhccccccccHHHhhccchHHHHHHhCCccc--chhhhhhhhhhccCcHHHHHHH
Confidence 567788777776666666554444 78888899999999999999999986543 3467889999999999999998
Q ss_pred HcCCHHHHHHHHccCCCHHHHHHHHHHHHHhhcCchhHHHHHhcCccHHHH-----------------------------
Q 006114 446 EEGGLDALLLLLRTSQNTTILRVASGAIANLAMNEMNQGLIMSRGGGQLLA----------------------------- 496 (660)
Q Consensus 446 e~GgI~~Lv~LL~~s~d~~v~~~Aa~AL~nLA~~~~n~~~Ive~g~I~~Ll----------------------------- 496 (660)
-.++|+.++..+-.+.+..|-........|||.+.-|...+++..|+..|+
T Consensus 423 yTdci~~lmk~v~~~~~~~vdl~lia~ciNl~lnkRNaQlvceGqgL~~LM~ra~k~~D~lLmK~vRniSqHeg~tqn~F 502 (791)
T KOG1222|consen 423 YTDCIKLLMKDVLSGTGSEVDLALIALCINLCLNKRNAQLVCEGQGLDLLMERAIKSRDLLLMKVVRNISQHEGATQNMF 502 (791)
T ss_pred HHHHHHHHHHHHHhcCCceecHHHHHHHHHHHhccccceEEecCcchHHHHHHHhcccchHHHHHHHHhhhccchHHHHH
Confidence 888999998877656666555444444457776665555555544444333
Q ss_pred --------HhhcCCCCHHHHHHHHHHHHHHh-cChhHHHHHHhccHHHHHHHHhcCC--CHHHHHHHHHHHHHhhccchh
Q 006114 497 --------KTASKTDDPQTLRMVAGALANLC-GNEKLHTMLEEDGAIKALLAMVRSG--NIDVIAQVARGLANFAKCESR 565 (660)
Q Consensus 497 --------~LL~~s~d~~v~~~Aa~aLanLa-~~~~~r~~iv~~G~V~~Lv~lL~s~--~~~v~~~Al~aLanLA~~~~~ 565 (660)
..++...+......+.|+|+||. .+-+....+-+...||.+-..+.++ ..++....+-+++.+|....
T Consensus 503 idyvgdLa~i~~nd~~E~F~~EClGtlanL~v~dldw~~ilq~~~LvPw~k~~L~pga~eddLvL~~vi~~GT~a~d~~- 581 (791)
T KOG1222|consen 503 IDYVGDLAGIAKNDNSESFGLECLGTLANLKVTDLDWAKILQSENLVPWMKTQLQPGADEDDLVLQIVIACGTMARDLD- 581 (791)
T ss_pred HHHHHHHHHHhhcCchHHHHHHHHHHHhhcccCCCCHHHHHhhccccHHHHHhhcCCccchhhhhHHHHHhhhhhhhhH-
Confidence 33333334445556778888887 4455666666778889888888754 34566677777777764432
Q ss_pred hhhhcchhhhHHHhhcChHHHHHHhhcC--CCHHHHHHHHHHHHHhhcCCccHHHHHhcCcH-HHHHHHHhcCChHHHHH
Q 006114 566 AIVQGQRKGRSHLMEDSALEWLIANSKT--NSASTRRHVELALCHLAQNEDNARDFISRGGA-KELVQISIESSREDIRN 642 (660)
Q Consensus 566 ~~aq~~~e~r~~Li~~G~v~~Lv~lL~s--~d~~vr~~Aa~AL~nLa~~~e~~~~Ive~G~l-~~Lv~lL~s~s~~~ir~ 642 (660)
....+...|+++.++.+|+. .|+.......+++..+..|...+..|+..... .-|+.++.+ .+..+|.
T Consensus 582 --------cA~Lla~a~~i~tlieLL~a~QeDDEfV~QiiyVF~Q~l~He~tr~~miket~~~AylIDLMHD-kN~eiRk 652 (791)
T KOG1222|consen 582 --------CARLLAPAKLIDTLIELLQACQEDDEFVVQIIYVFLQFLKHELTRRLMIKETALGAYLIDLMHD-KNAEIRK 652 (791)
T ss_pred --------HHHHhCccccHHHHHHHHHhhcccchHHHHHHHHHHHHHHHHHHHHHHHhhccchHHHHHHHhc-ccHHHHH
Confidence 22346668999999999987 46777777788888888898888888865444 456677765 5566777
Q ss_pred HHHHHHh
Q 006114 643 LAKKTMK 649 (660)
Q Consensus 643 ~A~~~L~ 649 (660)
.+..+|.
T Consensus 653 VCDn~Ld 659 (791)
T KOG1222|consen 653 VCDNALD 659 (791)
T ss_pred HHHHHHH
Confidence 7776653
No 42
>cd00256 VATPase_H VATPase_H, regulatory vacuolar ATP synthase subunit H (Vma13p); activation component of the peripheral V1 complex of V-ATPase, a heteromultimeric enzyme which uses ATP to actively transport protons into organelles and extracellular compartments. The topology is that of a superhelical spiral, in part the geometry is similar to superhelices composed of armadillo repeat motifs, as found in importins for example.
Probab=98.69 E-value=2.3e-06 Score=94.62 Aligned_cols=237 Identities=15% Similarity=0.056 Sum_probs=174.1
Q ss_pred CCHHHHHHhhCCCCHHHHHHHHHHHHHhhC-CchhHHHHHHcCCHHHHHHHHccCCCHHHHHHHHHHHHHhhcCchhHHH
Q 006114 407 VGLPKILQLLTSEDPDVQIHAVKVVANLAA-EDINQEKIVEEGGLDALLLLLRTSQNTTILRVASGAIANLAMNEMNQGL 485 (660)
Q Consensus 407 ggI~~LV~LL~s~d~~vr~~Aa~aL~nLa~-~~en~~~Ive~GgI~~Lv~LL~~s~d~~v~~~Aa~AL~nLA~~~~n~~~ 485 (660)
....+++.+|..+|..+...|+.+|+.++. .+.+.......-.++.|...|.+..+...+..|+.+|..|...+..|..
T Consensus 101 ~~~~~fl~lL~~~d~~i~~~a~~iLt~l~~~~~~~~~~~~l~~~~~~l~~~l~~~~~~~~~~~~v~~L~~LL~~~~~R~~ 180 (429)
T cd00256 101 KTWEPFFNLLNRQDQFIVHMSFSILAKLACFGLAKMEGSDLDYYFNWLKEQLNNITNNDYVQTAARCLQMLLRVDEYRFA 180 (429)
T ss_pred cchHHHHHHHcCCchhHHHHHHHHHHHHHhcCccccchhHHHHHHHHHHHHhhccCCcchHHHHHHHHHHHhCCchHHHH
Confidence 346667789999999999999999999876 3332111111112344556665333456677788999999999999999
Q ss_pred HHhcCccHHHHHhhcCCC-CHHHHHHHHHHHHHHhcChhHHHHHHhccHHHHHHHHhcC-CCHHHHHHHHHHHHHhhccc
Q 006114 486 IMSRGGGQLLAKTASKTD-DPQTLRMVAGALANLCGNEKLHTMLEEDGAIKALLAMVRS-GNIDVIAQVARGLANFAKCE 563 (660)
Q Consensus 486 Ive~g~I~~Ll~LL~~s~-d~~v~~~Aa~aLanLa~~~~~r~~iv~~G~V~~Lv~lL~s-~~~~v~~~Al~aLanLA~~~ 563 (660)
+.+.+|+++|+.+|.... +.+.+..++-++|-|+.+++....+...|.|+.|+.+++. .-..|.+-++.+|.|+...+
T Consensus 181 f~~~~~v~~L~~~L~~~~~~~Ql~Y~~ll~lWlLSF~~~~~~~~~~~~~i~~l~~i~k~s~KEKvvRv~l~~l~Nll~~~ 260 (429)
T cd00256 181 FVLADGVPTLVKLLSNATLGFQLQYQSIFCIWLLTFNPHAAEVLKRLSLIQDLSDILKESTKEKVIRIVLAIFRNLISKR 260 (429)
T ss_pred HHHccCHHHHHHHHhhccccHHHHHHHHHHHHHHhccHHHHHhhccccHHHHHHHHHHhhhhHHHHHHHHHHHHHHhhcc
Confidence 999999999999997644 6799999999999999999988888889999999999984 45678899999999998743
Q ss_pred h----h--h----hh--------------------------------------------------------------hcc
Q 006114 564 S----R--A----IV--------------------------------------------------------------QGQ 571 (660)
Q Consensus 564 ~----~--~----~a--------------------------------------------------------------q~~ 571 (660)
. . . +. .+.
T Consensus 261 ~~~~~~~~~~~~mv~~~l~~~l~~L~~rk~~DedL~edl~~L~e~L~~~~k~ltsfD~Y~~El~sg~L~WSp~H~se~FW 340 (429)
T cd00256 261 VDREVKKTAALQMVQCKVLKTLQSLEQRKYDDEDLTDDLKFLTEELKNSVQDLSSFDEYKSELRSGRLHWSPVHKSEKFW 340 (429)
T ss_pred cccchhhhHHHHHHHcChHHHHHHHhcCCCCcHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHhcCCccCCCCCCCchHH
Confidence 1 0 0 00 000
Q ss_pred hhhhHHHhhcC--hHHHHHHhhc-CCCHHHHHHHHHHHHHhhcC-CccHHHHHhcCcHHHHHHHHhcCChHHHHHH
Q 006114 572 RKGRSHLMEDS--ALEWLIANSK-TNSASTRRHVELALCHLAQN-EDNARDFISRGGAKELVQISIESSREDIRNL 643 (660)
Q Consensus 572 ~e~r~~Li~~G--~v~~Lv~lL~-s~d~~vr~~Aa~AL~nLa~~-~e~~~~Ive~G~l~~Lv~lL~s~s~~~ir~~ 643 (660)
+++-..+.+.+ .+..|+.++. +.|+.+...||.=++.++.+ |..+..+...|+=..++.++.++++++.+++
T Consensus 341 ~EN~~kf~~~~~~llk~L~~iL~~s~d~~~laVAc~Dige~vr~~P~gr~i~~~lg~K~~vM~Lm~h~d~~Vr~eA 416 (429)
T cd00256 341 RENADRLNEKNYELLKILIHLLETSVDPIILAVACHDIGEYVRHYPRGKDVVEQLGGKQRVMRLLNHEDPNVRYEA 416 (429)
T ss_pred HHHHHHHHhcchHHHHHHHHHHhcCCCcceeehhhhhHHHHHHHCccHHHHHHHcCcHHHHHHHhcCCCHHHHHHH
Confidence 22333444433 5578888884 45788888899999999885 4566666678999999999987766554443
No 43
>KOG4500 consensus Rho/Rac GTPase guanine nucleotide exchange factor smgGDS/Vimar [Signal transduction mechanisms]
Probab=98.55 E-value=4.3e-06 Score=90.20 Aligned_cols=245 Identities=16% Similarity=0.126 Sum_probs=183.5
Q ss_pred hhcCchhHHHHHhCC-CHHHHHHhhCCCCHHHHHHHHHHHHHhhCCchhHHHHHHcCCHHHHHHHHcc----CCCHHHHH
Q 006114 393 LSGQRATIAKICDEV-GLPKILQLLTSEDPDVQIHAVKVVANLAAEDINQEKIVEEGGLDALLLLLRT----SQNTTILR 467 (660)
Q Consensus 393 laa~~~~~~~I~e~g-gI~~LV~LL~s~d~~vr~~Aa~aL~nLa~~~en~~~Ive~GgI~~Lv~LL~~----s~d~~v~~ 467 (660)
+...+...++++..+ .+..++..+.|+|...+..++-+|+|++..+.++..+++.|.+..|+.+|.. +.|.+++-
T Consensus 300 lltGDeSMq~L~~~p~~l~~~~sw~~S~d~~l~t~g~LaigNfaR~D~~ci~~v~~~~~nkL~~~l~~~~~vdgnV~~qh 379 (604)
T KOG4500|consen 300 LLTGDESMQKLHADPQFLDFLESWFRSDDSNLITMGSLAIGNFARRDDICIQLVQKDFLNKLISCLMQEKDVDGNVERQH 379 (604)
T ss_pred hhcCchHHHHHhcCcHHHHHHHHHhcCCchhHHHHHHHHHHhhhccchHHHHHHHHHHHHHHHHHHHHhcCCCccchhHH
Confidence 445566677777766 7899999999999999999999999999999999999999999999999964 24566777
Q ss_pred HHHHHHHHhhcCchhHHHHHhcCccHHHHHhhcCCCCHHHHHHHHHHHHHHhcC-hhHHHHHHh-ccHHHHHHHHhcCCC
Q 006114 468 VASGAIANLAMNEMNQGLIMSRGGGQLLAKTASKTDDPQTLRMVAGALANLCGN-EKLHTMLEE-DGAIKALLAMVRSGN 545 (660)
Q Consensus 468 ~Aa~AL~nLA~~~~n~~~Ive~g~I~~Ll~LL~~s~d~~v~~~Aa~aLanLa~~-~~~r~~iv~-~G~V~~Lv~lL~s~~ 545 (660)
.++.||+|++....|+..+...|+..+++..++. ..|.+..--.++++.+... +.....+.. ...+..|+..-++++
T Consensus 380 A~lsALRnl~IPv~nka~~~~aGvteaIL~~lk~-~~ppv~fkllgTlrM~~d~qe~~a~eL~kn~~l~ekLv~Wsks~D 458 (604)
T KOG4500|consen 380 ACLSALRNLMIPVSNKAHFAPAGVTEAILLQLKL-ASPPVTFKLLGTLRMIRDSQEYIACELAKNPELFEKLVDWSKSPD 458 (604)
T ss_pred HHHHHHHhccccCCchhhccccchHHHHHHHHHh-cCCcchHHHHHHHHHHHhchHHHHHHHhcCHHHHHHHHHhhhCCc
Confidence 8999999999999999999999999999999975 5566776677777776633 334444443 356777888877765
Q ss_pred H-HHHHHHHHHHHHhhccchhhhhhcchhhhHHHhhcChHHHHHHhhcCCCHHHHHHHHHHHHHhhc-C----C------
Q 006114 546 I-DVIAQVARGLANFAKCESRAIVQGQRKGRSHLMEDSALEWLIANSKTNSASTRRHVELALCHLAQ-N----E------ 613 (660)
Q Consensus 546 ~-~v~~~Al~aLanLA~~~~~~~aq~~~e~r~~Li~~G~v~~Lv~lL~s~d~~vr~~Aa~AL~nLa~-~----~------ 613 (660)
- .|.....+.+.-|..++- .+..-..+-..|++..++..+...+-..+..|.-||+.++. + +
T Consensus 459 ~aGv~gESnRll~~lIkHs~------~kdv~~tvpksg~ik~~Vsm~t~~hi~mqnEalVal~~~~~~yl~~~~kd~ea~ 532 (604)
T KOG4500|consen 459 FAGVAGESNRLLLGLIKHSK------YKDVILTVPKSGGIKEKVSMFTKNHINMQNEALVALLSTESKYLIVIGKDLEAV 532 (604)
T ss_pred cchhhhhhhHHHHHHHHhhH------hhhhHhhccccccHHHHHHHHHHhhHHHhHHHHHHHHHHHHHhccccchhHHHH
Confidence 4 366666666666664421 11223345568999999999988888888888888887753 1 1
Q ss_pred ccHHHHHhcCcHHHHHHHHhcCChHHHHHHH
Q 006114 614 DNARDFISRGGAKELVQISIESSREDIRNLA 644 (660)
Q Consensus 614 e~~~~Ive~G~l~~Lv~lL~s~s~~~ir~~A 644 (660)
-....+++.|+-.....++.+++...++...
T Consensus 533 ~l~~~lik~~~~~~~a~~I~~~s~~~~k~~~ 563 (604)
T KOG4500|consen 533 FLAILLIKHGYANVAATIIASPSYEALKSYR 563 (604)
T ss_pred HHHHHHHHhhhhhhhhHHhcCcHHHHHHHHH
Confidence 1245566788877777788777665554443
No 44
>KOG0161 consensus Myosin class II heavy chain [Cytoskeleton]
Probab=98.49 E-value=0.00076 Score=85.73 Aligned_cols=207 Identities=22% Similarity=0.276 Sum_probs=142.3
Q ss_pred hHHHHHHHHHHHHhhH----------HHHHhhHHHHHHHHHHHHHHHHHhhhhchHHHHHHHHHHHhhH---HHHHHhhh
Q 006114 43 DKCELEKLLRECQISY----------DEAKDNLVTQVELLTAKIEMQQKLRENDKYEFEKQLRESQISY---DESMRNLV 109 (660)
Q Consensus 43 ~~~~~~~~~~~~~~~~----------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~---~~~~~~~~ 109 (660)
++..+|..++.+..++ ..++.+|+.+++.+...+|++++. ++++|+..+++.-.. -++|.++.
T Consensus 986 ekk~lEe~~~~l~~~l~~~eek~~~l~k~~~kle~~l~~le~~le~e~~~----r~e~Ek~~rkle~el~~~~e~~~~~~ 1061 (1930)
T KOG0161|consen 986 EKKELEERIRELQDDLQAEEEKAKSLNKAKAKLEQQLDDLEVTLEREKRI----RMELEKAKRKLEGELKDLQESIEELK 1061 (1930)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHhhhHHHHHH
Confidence 3445777666666555 456778999999999999999998 777787666655433 45666677
Q ss_pred hhhhHHHHhhhhHHHHHHHHHhhhhhhhhhhhhHHHHHHHHHHHhhhhhhhhhhhhhhHHHHHHhhHHHHHHHHHHHHHH
Q 006114 110 TRSEFLEKENAHLELEVEKILGELNHQKDQNNLKREKIVQLEISLKNSKQQQLDNSSYQKVLADTTQMYEKKITELIKQL 189 (660)
Q Consensus 110 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l 189 (660)
.+.+-|..+....+.|+-.+...+....+....+..++.+|+-.++...+.--...+...-+.+....+..++.+|..+|
T Consensus 1062 ~~~~el~~~l~kke~El~~l~~k~e~e~~~~~~l~k~i~eL~~~i~el~e~le~er~~r~K~ek~r~dL~~ele~l~~~L 1141 (1930)
T KOG0161|consen 1062 KQKEELDNQLKKKESELSQLQSKLEDEQAEVAQLQKQIKELEARIKELEEELEAERASRAKAERQRRDLSEELEELKEEL 1141 (1930)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 78888888888888888888888888888888888888888777777777766666666677777778888888888888
Q ss_pred HHHHhhhhchHHHHHHHHHHHhhhhhhHHHHhhhhhHHHHHHhhHHHHHHHHHHHHhhhhhhhhhhh
Q 006114 190 EIEHARSEGAEEQVDTMKKLISDNQKSIEQYEMENSTYQKALADTTQLYEKKIAELNKKLEDEHACF 256 (660)
Q Consensus 190 ~~e~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~ 256 (660)
++.-+. ..+..+++ +..-.+.++.-..++.++.....++++-.+.+...+++|.-|+++..-+-
T Consensus 1142 ee~~~~-t~~q~e~~--~k~e~e~~~l~~~leee~~~~e~~~~~lr~~~~~~~~el~~qle~l~~~k 1205 (1930)
T KOG0161|consen 1142 EEQGGT-TAAQLELN--KKREAEVQKLRRDLEEETLDHEAQIEELRKKHADSLAELQEQLEQLQKDK 1205 (1930)
T ss_pred HHHhhh-HHHHHHHH--HHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 777332 22222211 22233334334445566666666666666777777777766666654333
No 45
>KOG0161 consensus Myosin class II heavy chain [Cytoskeleton]
Probab=98.49 E-value=0.00099 Score=84.73 Aligned_cols=263 Identities=20% Similarity=0.260 Sum_probs=194.1
Q ss_pred hhhhhHHHHHHHHHHHHhhHHHHHhhHHHHHHHHHHHHHHHHH-------h---hhhchHHHHHHHHHHHhhHHHHHHhh
Q 006114 39 LRENDKCELEKLLRECQISYDEAKDNLVTQVELLTAKIEMQQK-------L---RENDKYEFEKQLRESQISYDESMRNL 108 (660)
Q Consensus 39 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------~---~~~~~~~~e~~~~~~~~~~~~~~~~~ 108 (660)
...+.+...||+.+++...|+++...|..|.+...+.++...| | -+.+..+.|.++...+..+.+++..|
T Consensus 1115 ~er~~r~K~ek~r~dL~~ele~l~~~Lee~~~~t~~q~e~~~k~e~e~~~l~~~leee~~~~e~~~~~lr~~~~~~~~el 1194 (1930)
T KOG0161|consen 1115 AERASRAKAERQRRDLSEELEELKEELEEQGGTTAAQLELNKKREAEVQKLRRDLEEETLDHEAQIEELRKKHADSLAEL 1194 (1930)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHH
Confidence 4455667788899999999999999999998877777663322 2 13445667788999999999999999
Q ss_pred hhhhh-------HHHHhhhhHHHHHHHHHhhhhhhhhhhhhHHHHHHHHHHHhhhhhhhhhhhhhhHHHHHHhhHHHHHH
Q 006114 109 VTRSE-------FLEKENAHLELEVEKILGELNHQKDQNNLKREKIVQLEISLKNSKQQQLDNSSYQKVLADTTQMYEKK 181 (660)
Q Consensus 109 ~~~~~-------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 181 (660)
.++++ .+++++++|+.|+.++..++.+.-..+-........+|.+|.+.+-.-.+-.....+++.....+-.+
T Consensus 1195 ~~qle~l~~~k~~lekek~~lq~e~~~l~~ev~~~~~~k~~~e~~~k~~E~~l~elq~k~~~~~~~~~~l~~q~~~l~~E 1274 (1930)
T KOG0161|consen 1195 QEQLEQLQKDKAKLEKEKSDLQREIADLAAELEQLSSEKKDLEKKDKKLEAQLSELQLKLDEQERLRNDLTAKRSRLQNE 1274 (1930)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhh
Confidence 99888 56688888888888888888766665556666678888888777666555555556788888999999
Q ss_pred HHHHHHHHHHHHhhhhchHHHHHHHHHHHhhhhhhHHHHhhhhhHHHHHHhhHHHHHHHHHHHHhhhhhhhhhhhhhhHH
Q 006114 182 ITELIKQLEIEHARSEGAEEQVDTMKKLISDNQKSIEQYEMENSTYQKALADTTQLYEKKIAELNKKLEDEHACFEGAVE 261 (660)
Q Consensus 182 ~~~l~~~l~~e~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 261 (660)
+.++-++++..-..+..+..-...+..++.+++. +--+++-..-.++-+.+-++..-..|.+++|++..-.+.+..
T Consensus 1275 ~~~l~~~lee~e~~~~~~~r~~~~~~~qle~~k~----qle~e~r~k~~l~~~l~~l~~e~~~l~e~leee~e~~~~l~r 1350 (1930)
T KOG0161|consen 1275 NEELSRQLEEAEAKLSALSRDKQALESQLEELKR----QLEEETREKSALENALRQLEHELDLLREQLEEEQEAKNELER 1350 (1930)
T ss_pred HHHHhhHhHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999988999999999999999999873 334555566677777888888899999999988877776666
Q ss_pred hHHHHHHHhhh----hhccccc-hhHHHHHHHHHHHHHHHHHhHHHHHH
Q 006114 262 QLDMVKKLLSD----YQNSNQG-QKEVHELCVKLKETRQLHESAVYEVQ 305 (660)
Q Consensus 262 ~~~~~~~~~~~----~~~~~~~-~~e~~~Lk~~Le~e~~~~e~~e~E~~ 305 (660)
++..+.-.+.+ ++....+ .+++.+.++.+....+..+...+...
T Consensus 1351 ~lsk~~~e~~~~~~k~e~~~~~~~eelee~kk~l~~~lq~~qe~~e~~~ 1399 (1930)
T KOG0161|consen 1351 KLSKANAELAQWKKKFEEEVLQRLEELEELKKKLQQRLQELEEQIEAAN 1399 (1930)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHH
Confidence 66555444433 3333333 45566666666665555554444433
No 46
>PF01602 Adaptin_N: Adaptin N terminal region; InterPro: IPR002553 Proteins synthesized on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. Clathrin coats contain both clathrin and adaptor complexes that link clathrin to receptors in coated vesicles. Clathrin-associated protein complexes are believed to interact with the cytoplasmic tails of membrane proteins, leading to their selection and concentration. The two major types of clathrin adaptor complexes are the heterotetrameric adaptor protein (AP) complexes, and the monomeric GGA (Golgi-localising, Gamma-adaptin ear domain homology, ARF-binding proteins) adaptors []. All AP complexes are heterotetramers composed of two large subunits (adaptins), a medium subunit (mu) and a small subunit (sigma). Each subunit has a specific function. Adaptin subunits recognise and bind to clathrin through their hinge region (clathrin box), and recruit accessory proteins that modulate AP function through their C-terminal appendage domains. By contrast, GGAs are monomers composed of four domains, which have functions similar to AP subunits: an N-terminal VHS (Vps27p/Hrs/Stam) domain, a GAT (GGA and Tom1) domain, a hinge region, and a C-terminal GAE (gamma-adaptin ear) domain. The GAE domain is similar to the AP gamma-adaptin ear domain, being responsible for the recruitment of accessory proteins that regulate clathrin-mediated endocytosis []. While clathrin mediates endocytic protein transport from ER to Golgi, coatomers (COPI, COPII) primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the N-terminal domain of various adaptins from different AP clathrin adaptor complexes (including AP1, AP2, AP3 and AP4), and from the beta and gamma subunits of various coatomer (COP) adaptors. This domain has a 2-layer alpha/alpha fold that forms a right-handed superhelix, and is a member of the ARM repeat superfamily []. The N-terminal region of the various AP adaptor proteins share strong sequence identity; by contrast, the C-terminal domains of different adaptins share similar structural folds, but have little sequence identity []. It has been proposed that the N-terminal domain interacts with another uniform component of the coated vesicles. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 1W63_C 2JKR_A 2JKT_A 2XA7_A 2VGL_B 3TJZ_E.
Probab=98.46 E-value=4.1e-06 Score=95.02 Aligned_cols=246 Identities=17% Similarity=0.189 Sum_probs=157.4
Q ss_pred hhhhhhcccCCCccccccchhhhhhc-CchhHHHHHhCCCHHHHHHhhCCCCHHHHHHHHHHHHHhhC-CchhHHHHHHc
Q 006114 370 YISKGSSRFGAPMSLQKSNPSRELSG-QRATIAKICDEVGLPKILQLLTSEDPDVQIHAVKVVANLAA-EDINQEKIVEE 447 (660)
Q Consensus 370 ~i~~l~~~L~~~~~~vr~~~~~~laa-~~~~~~~I~e~ggI~~LV~LL~s~d~~vr~~Aa~aL~nLa~-~~en~~~Ive~ 447 (660)
.+..+...+.++.+.++..+++.++. .++... ...++.+..++.++++.||..|+.++..+.. .|+... ..
T Consensus 80 ~~n~l~kdl~~~n~~~~~lAL~~l~~i~~~~~~----~~l~~~v~~ll~~~~~~VRk~A~~~l~~i~~~~p~~~~---~~ 152 (526)
T PF01602_consen 80 IINSLQKDLNSPNPYIRGLALRTLSNIRTPEMA----EPLIPDVIKLLSDPSPYVRKKAALALLKIYRKDPDLVE---DE 152 (526)
T ss_dssp HHHHHHHHHCSSSHHHHHHHHHHHHHH-SHHHH----HHHHHHHHHHHHSSSHHHHHHHHHHHHHHHHHCHCCHH---GG
T ss_pred HHHHHHHhhcCCCHHHHHHHHhhhhhhcccchh----hHHHHHHHHHhcCCchHHHHHHHHHHHHHhccCHHHHH---HH
Confidence 34455666777777788777776222 122221 2247778899999999999999999999887 554321 11
Q ss_pred CCHHHHHHHHccCCCHHHHHHHHHHHHHhhcCchhHHHHHhcCccHHHHHhhcCCCCHHHHHHHHHHHHHHhcC-hhHHH
Q 006114 448 GGLDALLLLLRTSQNTTILRVASGAIANLAMNEMNQGLIMSRGGGQLLAKTASKTDDPQTLRMVAGALANLCGN-EKLHT 526 (660)
Q Consensus 448 GgI~~Lv~LL~~s~d~~v~~~Aa~AL~nLA~~~~n~~~Ive~g~I~~Ll~LL~~s~d~~v~~~Aa~aLanLa~~-~~~r~ 526 (660)
.++.+..+|. ++|+.|+..|+.++..+..++.... -.-...++.|..++. .++|.++..++..|..++.. +....
T Consensus 153 -~~~~l~~lL~-d~~~~V~~~a~~~l~~i~~~~~~~~-~~~~~~~~~L~~~l~-~~~~~~q~~il~~l~~~~~~~~~~~~ 228 (526)
T PF01602_consen 153 -LIPKLKQLLS-DKDPSVVSAALSLLSEIKCNDDSYK-SLIPKLIRILCQLLS-DPDPWLQIKILRLLRRYAPMEPEDAD 228 (526)
T ss_dssp -HHHHHHHHTT-HSSHHHHHHHHHHHHHHHCTHHHHT-THHHHHHHHHHHHHT-CCSHHHHHHHHHHHTTSTSSSHHHHH
T ss_pred -HHHHHhhhcc-CCcchhHHHHHHHHHHHccCcchhh-hhHHHHHHHhhhccc-ccchHHHHHHHHHHHhcccCChhhhh
Confidence 4888999996 7899999999999999822222111 111223444555543 47888888888888888743 33221
Q ss_pred HHHhccHHHHHHHHhcCCCHHHHHHHHHHHHHhhccchhhhhhcchhhhHHHhhcChHHHHHHhhcCCCHHHHHHHHHHH
Q 006114 527 MLEEDGAIKALLAMVRSGNIDVIAQVARGLANFAKCESRAIVQGQRKGRSHLMEDSALEWLIANSKTNSASTRRHVELAL 606 (660)
Q Consensus 527 ~iv~~G~V~~Lv~lL~s~~~~v~~~Al~aLanLA~~~~~~~aq~~~e~r~~Li~~G~v~~Lv~lL~s~d~~vr~~Aa~AL 606 (660)
. ...++.+..++.+.++.|...|+.++..+....+ .-..++++|+.++.++++.++-.+..+|
T Consensus 229 ~---~~~i~~l~~~l~s~~~~V~~e~~~~i~~l~~~~~--------------~~~~~~~~L~~lL~s~~~nvr~~~L~~L 291 (526)
T PF01602_consen 229 K---NRIIEPLLNLLQSSSPSVVYEAIRLIIKLSPSPE--------------LLQKAINPLIKLLSSSDPNVRYIALDSL 291 (526)
T ss_dssp H---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHSSSHH--------------HHHHHHHHHHHHHTSSSHHHHHHHHHHH
T ss_pred H---HHHHHHHHHHhhccccHHHHHHHHHHHHhhcchH--------------HHHhhHHHHHHHhhcccchhehhHHHHH
Confidence 1 4577778888888888888888888877764321 2345677788888877777888888888
Q ss_pred HHhhcCCccHHHHHhcCcHHHHHHHHhcCChHHHHHHHHHHH
Q 006114 607 CHLAQNEDNARDFISRGGAKELVQISIESSREDIRNLAKKTM 648 (660)
Q Consensus 607 ~nLa~~~e~~~~Ive~G~l~~Lv~lL~s~s~~~ir~~A~~~L 648 (660)
..++... ...+. .....+..+...++..+|..+..+|
T Consensus 292 ~~l~~~~---~~~v~--~~~~~~~~l~~~~d~~Ir~~~l~lL 328 (526)
T PF01602_consen 292 SQLAQSN---PPAVF--NQSLILFFLLYDDDPSIRKKALDLL 328 (526)
T ss_dssp HHHCCHC---HHHHG--THHHHHHHHHCSSSHHHHHHHHHHH
T ss_pred HHhhccc---chhhh--hhhhhhheecCCCChhHHHHHHHHH
Confidence 8777654 12222 1222233444344455555555544
No 47
>KOG0996 consensus Structural maintenance of chromosome protein 4 (chromosome condensation complex Condensin, subunit C) [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning]
Probab=98.33 E-value=0.0024 Score=76.42 Aligned_cols=300 Identities=16% Similarity=0.158 Sum_probs=168.8
Q ss_pred HHHHHHhhHHHHHHHHHHHHHHHHHHhhhhchHHHHHHHHHHHhhhhhhHHHHhhhhhHHHHHHhhHHHHHHHHHHHHhh
Q 006114 168 QKVLADTTQMYEKKITELIKQLEIEHARSEGAEEQVDTMKKLISDNQKSIEQYEMENSTYQKALADTTQLYEKKIAELNK 247 (660)
Q Consensus 168 ~~~~~~~~~~~~~~~~~l~~~l~~e~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~ 247 (660)
.+.+.+++....+++.++.+-.++-......+..++..|+.++.... .+-+..+..+-.+|.-|-.+|..+.|
T Consensus 414 ~kKleke~ek~~~~~~e~e~~pe~~~~~i~~~~~ei~~L~~~~~~~~-------~~l~e~~~~l~~~t~~~~~e~~~~ek 486 (1293)
T KOG0996|consen 414 IKKLEKEIEKARRKKSELEKAPEKARIEIQKCQTEIEQLEELLEKEE-------RELDEILDSLKQETEGIREEIEKLEK 486 (1293)
T ss_pred HHHHHHHHHHHHhhHHHHHhCchhhHhHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHhhhhhhhHHHHHHHHH
Confidence 34555555555566666666665555555555555555555554444 44455556677888899999999999
Q ss_pred hhhhhhhhhhhhHHhHHHHHHHhhhhhccc-cchhHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHhhhhccHHHH
Q 006114 248 KLEDEHACFEGAVEQLDMVKKLLSDYQNSN-QGQKEVHELCVKLKETRQLHESAVYEVQTLKSEYKNLLEEKETMSDELQ 326 (660)
Q Consensus 248 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~e~~~Lk~~Le~e~~~~e~~e~E~~~lks~l~~l~~~~~~~~eel~ 326 (660)
.|++.-.+++.+..+++++.--|.+.-... .....+.+++..|.......+..-.++..++..+.++.......+.++.
T Consensus 487 el~~~~~~~n~~~~e~~vaesel~~L~~~~~~~~~~~e~lk~~L~~~~~~~~e~~~~l~~~k~~l~~~k~e~~~~~k~l~ 566 (1293)
T KOG0996|consen 487 ELMPLLKQVNEARSELDVAESELDILLSRHETGLKKVEELKGKLLASSESLKEKKTELDDLKEELPSLKQELKEKEKELP 566 (1293)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHhHH
Confidence 999999999999999988877776654432 3344557888888888888887778888888888887777777777777
Q ss_pred HHHHHHHHHHHHhhhhHHHHHHHHhhCCCCCCccccCCC----cccchhhhhhcccCCCccccccchhhhhhcCchhHHH
Q 006114 327 AARQRLLVEEKQRKAIEYELVKLKKTAPEHDDDFEDKKP----YTKDYISKGSSRFGAPMSLQKSNPSRELSGQRATIAK 402 (660)
Q Consensus 327 ~~~k~l~~e~~~rkkLe~E~~~l~~~l~~~~~~~~~~~~----~~~g~i~~l~~~L~~~~~~vr~~~~~~laa~~~~~~~ 402 (660)
++++-...-..+-..+..+.....++....+...+-.-. -..|.|+..++-|+|+-+. -...-.+++...+....
T Consensus 567 ~~~~e~~~~~~~~~~~rqrveE~ks~~~~~~s~~kVl~al~r~kesG~i~Gf~GRLGDLg~I-d~kYDvAIsTac~~Ldy 645 (1293)
T KOG0996|consen 567 KLRKEERNLKSQLNKLRQRVEEAKSSLSSSRSRNKVLDALMRLKESGRIPGFYGRLGDLGAI-DEKYDVAISTACARLDY 645 (1293)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHcCCCCcccccccccccc-chHHHHHHHHhccccce
Confidence 777766655555555666665555544443222210000 1124455566656554211 00000111111111111
Q ss_pred HH-hC-CCHHHHHHhhCCCCHHHHHHHHHHHHHhhCCchhHHHHHHcCCHHHHHHHHccCCCHHHHHHHHHHHHHhhc
Q 006114 403 IC-DE-VGLPKILQLLTSEDPDVQIHAVKVVANLAAEDINQEKIVEEGGLDALLLLLRTSQNTTILRVASGAIANLAM 478 (660)
Q Consensus 403 I~-e~-ggI~~LV~LL~s~d~~vr~~Aa~aL~nLa~~~en~~~Ive~GgI~~Lv~LL~~s~d~~v~~~Aa~AL~nLA~ 478 (660)
|+ +. ......|.+|...+... +..-+|-.|..+..+-..|...--+|.|+.++. ..|+.++..---+|.+...
T Consensus 646 iVVdt~e~aq~cI~fl~~~nLgr--aTFi~LDki~~~~~~l~~i~tpenvPRLfDLv~-~~d~~~r~aFYfaLrdtLV 720 (1293)
T KOG0996|consen 646 IVVDTIETAQECINFLKKNNLGR--ATFIILDKIKDHQKKLAPITTPENVPRLFDLVK-CKDEKFRPAFYFALRDTLV 720 (1293)
T ss_pred EEeccHHHHHHHHHHHHHcCCCc--eeEEehHhhhhhhhccCCCCCCCCcchHhhhhc-cCCHHHHHHHHHHHhhhhh
Confidence 10 00 01112222222111100 001111122221111122334456999999997 7789888877777776543
No 48
>KOG4646 consensus Uncharacterized conserved protein, contains ARM repeats [Function unknown]
Probab=98.33 E-value=8.7e-06 Score=75.76 Aligned_cols=130 Identities=20% Similarity=0.224 Sum_probs=107.8
Q ss_pred HHHHHHhh-CCCCHHHHHHHHHHHHHhhCCchhHHHHHHcCCHHHHHHHHccCCCHHHHHHHHHHHHHhhcCchhHHHHH
Q 006114 409 LPKILQLL-TSEDPDVQIHAVKVVANLAAEDINQEKIVEEGGLDALLLLLRTSQNTTILRVASGAIANLAMNEMNQGLIM 487 (660)
Q Consensus 409 I~~LV~LL-~s~d~~vr~~Aa~aL~nLa~~~en~~~Ive~GgI~~Lv~LL~~s~d~~v~~~Aa~AL~nLA~~~~n~~~Iv 487 (660)
+..||.-. ...+.+.+.....-|+|+|.+|.|=..+.+.++++..+..|. .+|..+.+++.+.|+|+|.++.|...|+
T Consensus 18 lq~LV~efq~tt~~eakeqv~ANLANFAYDP~Nys~Lrql~vLdlFvdsl~-e~ne~LvefgIgglCNlC~d~~n~~~I~ 96 (173)
T KOG4646|consen 18 LQHLVDEFQTTTNIEAKEQVTANLANFAYDPINYSHLRQLDVLDLFVDSLE-EQNELLVEFGIGGLCNLCLDKTNAKFIR 96 (173)
T ss_pred HHHHHHHHHHhccHHHHHHHHHHHHhhccCcchHHHHHHhhHHHHHHHHhh-cccHHHHHHhHHHHHhhccChHHHHHHH
Confidence 45556333 357888999999999999999999999999999999999997 7899999999999999999999999999
Q ss_pred hcCccHHHHHhhcCCCCHHHHHHHHHHHHHHh-cChhHHHHHHhccHHHHHHHH
Q 006114 488 SRGGGQLLAKTASKTDDPQTLRMVAGALANLC-GNEKLHTMLEEDGAIKALLAM 540 (660)
Q Consensus 488 e~g~I~~Ll~LL~~s~d~~v~~~Aa~aLanLa-~~~~~r~~iv~~G~V~~Lv~l 540 (660)
+.+|+|..+.++++ +...+.-.|+.++..|+ .....+..+....++..+...
T Consensus 97 ea~g~plii~~lss-p~e~tv~sa~~~l~~l~~~~Rt~r~ell~p~Vv~~v~r~ 149 (173)
T KOG4646|consen 97 EALGLPLIIFVLSS-PPEITVHSAALFLQLLEFGERTERDELLSPAVVRTVQRW 149 (173)
T ss_pred HhcCCceEEeecCC-ChHHHHHHHHHHHHHhcCcccchhHHhccHHHHHHHHHH
Confidence 99999999999975 66677888889999998 555566666655455444443
No 49
>KOG2759 consensus Vacuolar H+-ATPase V1 sector, subunit H [Energy production and conversion]
Probab=98.27 E-value=4.8e-05 Score=82.36 Aligned_cols=236 Identities=17% Similarity=0.080 Sum_probs=179.3
Q ss_pred CHHHHHHhhCCCCHHHHHHHHHHHHHhhC-CchhHHHHHHcC-CHHHHHHHHccCCCHHHHHHHHHHHHHhhcCchhHHH
Q 006114 408 GLPKILQLLTSEDPDVQIHAVKVVANLAA-EDINQEKIVEEG-GLDALLLLLRTSQNTTILRVASGAIANLAMNEMNQGL 485 (660)
Q Consensus 408 gI~~LV~LL~s~d~~vr~~Aa~aL~nLa~-~~en~~~Ive~G-gI~~Lv~LL~~s~d~~v~~~Aa~AL~nLA~~~~n~~~ 485 (660)
.-+..+.+|..++..+...+.++++.++. ....-.. .+.. ....|-..+.++.++.....|++||-.+...|+.|..
T Consensus 115 ~~~~fl~ll~r~d~~iv~~~~~Ils~la~~g~~~~~~-~e~~~~~~~l~~~l~~~~~~~~~~~~~rcLQ~ll~~~eyR~~ 193 (442)
T KOG2759|consen 115 EWLSFLNLLNRQDTFIVEMSFRILSKLACFGNCKMEL-SELDVYKGFLKEQLQSSTNNDYIQFAARCLQTLLRVDEYRYA 193 (442)
T ss_pred chHHHHHHHhcCChHHHHHHHHHHHHHHHhccccccc-hHHHHHHHHHHHHHhccCCCchHHHHHHHHHHHhcCcchhhe
Confidence 35667888988888888888999988877 3322111 0100 1344556666666777778899999999999999999
Q ss_pred HHhcCccHHHHHhh-cCCCCHHHHHHHHHHHHHHhcChhHHHHHHhccHHHHHHHHhcC-CCHHHHHHHHHHHHHhhccc
Q 006114 486 IMSRGGGQLLAKTA-SKTDDPQTLRMVAGALANLCGNEKLHTMLEEDGAIKALLAMVRS-GNIDVIAQVARGLANFAKCE 563 (660)
Q Consensus 486 Ive~g~I~~Ll~LL-~~s~d~~v~~~Aa~aLanLa~~~~~r~~iv~~G~V~~Lv~lL~s-~~~~v~~~Al~aLanLA~~~ 563 (660)
++..+|+..++..+ +...+.+++...+-++|-|+.+|..+..+...+.++.|.++++. .-..|.+.++.++.|+....
T Consensus 194 ~v~adg~~~l~~~l~s~~~~~QlQYqsifciWlLtFn~~~ae~~~~~~li~~L~~Ivk~~~KEKV~Rivlai~~Nll~k~ 273 (442)
T KOG2759|consen 194 FVIADGVSLLIRILASTKCGFQLQYQSIFCIWLLTFNPHAAEKLKRFDLIQDLSDIVKESTKEKVTRIVLAIFRNLLDKG 273 (442)
T ss_pred eeecCcchhhHHHHhccCcchhHHHHHHHHHHHhhcCHHHHHHHhhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccC
Confidence 99999999999988 55678899999999999999999999999888999999999985 45678899999999998766
Q ss_pred hhh------hhhc------------------------------------------------------------------c
Q 006114 564 SRA------IVQG------------------------------------------------------------------Q 571 (660)
Q Consensus 564 ~~~------~aq~------------------------------------------------------------------~ 571 (660)
++. ..+. .
T Consensus 274 ~~~~~~k~~~~~mv~~~v~k~l~~L~~rkysDEDL~~di~~L~e~L~~svq~LsSFDeY~sEl~sG~L~WSP~Hk~e~FW 353 (442)
T KOG2759|consen 274 PDRETKKDIASQMVLCKVLKTLQSLEERKYSDEDLVDDIEFLTEKLKNSVQDLSSFDEYKSELRSGRLEWSPVHKSEKFW 353 (442)
T ss_pred chhhHHHHHHHHHHhcCchHHHHHHHhcCCCcHHHHHHHHHHHHHHHHHHHhhccHHHHHHHHHhCCcCCCccccccchH
Confidence 421 0000 0
Q ss_pred hhhhHHHhhc--ChHHHHHHhhcCC-CHHHHHHHHHHHHHhhc-CCccHHHHHhcCcHHHHHHHHhcCChHHHHHHH
Q 006114 572 RKGRSHLMED--SALEWLIANSKTN-SASTRRHVELALCHLAQ-NEDNARDFISRGGAKELVQISIESSREDIRNLA 644 (660)
Q Consensus 572 ~e~r~~Li~~--G~v~~Lv~lL~s~-d~~vr~~Aa~AL~nLa~-~~e~~~~Ive~G~l~~Lv~lL~s~s~~~ir~~A 644 (660)
+++-..+.+. ..+..|+.+|.+. ||.+-..||.-++.... +|+....+...||=..+++++.++++++..++-
T Consensus 354 ~eNa~rlnennyellkiL~~lLe~s~Dp~iL~VAc~DIge~Vr~yP~gk~vv~k~ggKe~vM~Llnh~d~~Vry~AL 430 (442)
T KOG2759|consen 354 RENADRLNENNYELLKILIKLLETSNDPIILCVACHDIGEYVRHYPEGKAVVEKYGGKERVMNLLNHEDPEVRYHAL 430 (442)
T ss_pred HHhHHHHhhccHHHHHHHHHHHhcCCCCceeehhhhhHHHHHHhCchHhHHHHHhchHHHHHHHhcCCCchHHHHHH
Confidence 2233344443 3677888888776 47777888888888876 567788888999999999999988877654443
No 50
>TIGR02168 SMC_prok_B chromosome segregation protein SMC, common bacterial type. SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle.
Probab=98.26 E-value=0.0043 Score=77.06 Aligned_cols=88 Identities=25% Similarity=0.321 Sum_probs=40.2
Q ss_pred HHHHHhhhhhhhhhhhhhhHHhHHHHHHHhhhhhccccchhHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHhhhh
Q 006114 241 KIAELNKKLEDEHACFEGAVEQLDMVKKLLSDYQNSNQGQKEVHELCVKLKETRQLHESAVYEVQTLKSEYKNLLEEKET 320 (660)
Q Consensus 241 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~Lk~~Le~e~~~~e~~e~E~~~lks~l~~l~~~~~~ 320 (660)
++..+..+++.-..+...+..+++.++.-+...+.... .+++..++..++........+..++..++.++..+......
T Consensus 394 ~~~~~~~~~~~l~~~~~~l~~~~~~l~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~l~~~~~~ 472 (1179)
T TIGR02168 394 QIASLNNEIERLEARLERLEDRRERLQQEIEELLKKLE-EAELKELQAELEELEEELEELQEELERLEEALEELREELEE 472 (1179)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhh-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33334444444444444444444444433433333333 44445555555555555555555555555555554444443
Q ss_pred ccHHHHHHH
Q 006114 321 MSDELQAAR 329 (660)
Q Consensus 321 ~~eel~~~~ 329 (660)
...++..+.
T Consensus 473 ~~~~~~~l~ 481 (1179)
T TIGR02168 473 AEQALDAAE 481 (1179)
T ss_pred HHHHHHHHH
Confidence 333443333
No 51
>PF01602 Adaptin_N: Adaptin N terminal region; InterPro: IPR002553 Proteins synthesized on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. Clathrin coats contain both clathrin and adaptor complexes that link clathrin to receptors in coated vesicles. Clathrin-associated protein complexes are believed to interact with the cytoplasmic tails of membrane proteins, leading to their selection and concentration. The two major types of clathrin adaptor complexes are the heterotetrameric adaptor protein (AP) complexes, and the monomeric GGA (Golgi-localising, Gamma-adaptin ear domain homology, ARF-binding proteins) adaptors []. All AP complexes are heterotetramers composed of two large subunits (adaptins), a medium subunit (mu) and a small subunit (sigma). Each subunit has a specific function. Adaptin subunits recognise and bind to clathrin through their hinge region (clathrin box), and recruit accessory proteins that modulate AP function through their C-terminal appendage domains. By contrast, GGAs are monomers composed of four domains, which have functions similar to AP subunits: an N-terminal VHS (Vps27p/Hrs/Stam) domain, a GAT (GGA and Tom1) domain, a hinge region, and a C-terminal GAE (gamma-adaptin ear) domain. The GAE domain is similar to the AP gamma-adaptin ear domain, being responsible for the recruitment of accessory proteins that regulate clathrin-mediated endocytosis []. While clathrin mediates endocytic protein transport from ER to Golgi, coatomers (COPI, COPII) primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the N-terminal domain of various adaptins from different AP clathrin adaptor complexes (including AP1, AP2, AP3 and AP4), and from the beta and gamma subunits of various coatomer (COP) adaptors. This domain has a 2-layer alpha/alpha fold that forms a right-handed superhelix, and is a member of the ARM repeat superfamily []. The N-terminal region of the various AP adaptor proteins share strong sequence identity; by contrast, the C-terminal domains of different adaptins share similar structural folds, but have little sequence identity []. It has been proposed that the N-terminal domain interacts with another uniform component of the coated vesicles. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 1W63_C 2JKR_A 2JKT_A 2XA7_A 2VGL_B 3TJZ_E.
Probab=98.23 E-value=1.9e-05 Score=89.51 Aligned_cols=243 Identities=16% Similarity=0.165 Sum_probs=158.5
Q ss_pred hhhhhcccCCCccccccchhhh---hhcCchhHHHHHhCCCHHHHHHhhCCCCHHHHHHHHHHHHHhhCCchhHHHHHHc
Q 006114 371 ISKGSSRFGAPMSLQKSNPSRE---LSGQRATIAKICDEVGLPKILQLLTSEDPDVQIHAVKVVANLAAEDINQEKIVEE 447 (660)
Q Consensus 371 i~~l~~~L~~~~~~vr~~~~~~---laa~~~~~~~I~e~ggI~~LV~LL~s~d~~vr~~Aa~aL~nLa~~~en~~~Ive~ 447 (660)
++.+...+.++.+.+|..++.+ +....+. .+..+.++.+..+|.++++.|+..|+.++..+...+.....+. .
T Consensus 116 ~~~v~~ll~~~~~~VRk~A~~~l~~i~~~~p~---~~~~~~~~~l~~lL~d~~~~V~~~a~~~l~~i~~~~~~~~~~~-~ 191 (526)
T PF01602_consen 116 IPDVIKLLSDPSPYVRKKAALALLKIYRKDPD---LVEDELIPKLKQLLSDKDPSVVSAALSLLSEIKCNDDSYKSLI-P 191 (526)
T ss_dssp HHHHHHHHHSSSHHHHHHHHHHHHHHHHHCHC---CHHGGHHHHHHHHTTHSSHHHHHHHHHHHHHHHCTHHHHTTHH-H
T ss_pred HHHHHHHhcCCchHHHHHHHHHHHHHhccCHH---HHHHHHHHHHhhhccCCcchhHHHHHHHHHHHccCcchhhhhH-H
Confidence 4445556667778888876555 2211111 1111158889999999999999999999999922221111111 1
Q ss_pred CCHHHHHHHHccCCCHHHHHHHHHHHHHhhcCchhHHHHHhcCccHHHHHhhcCCCCHHHHHHHHHHHHHHhcChhHHHH
Q 006114 448 GGLDALLLLLRTSQNTTILRVASGAIANLAMNEMNQGLIMSRGGGQLLAKTASKTDDPQTLRMVAGALANLCGNEKLHTM 527 (660)
Q Consensus 448 GgI~~Lv~LL~~s~d~~v~~~Aa~AL~nLA~~~~n~~~Ive~g~I~~Ll~LL~~s~d~~v~~~Aa~aLanLa~~~~~r~~ 527 (660)
..++.|..++ ..++|-++..+..+|..++........- ...++.+..++. +.++.|...|+.++..+...+.
T Consensus 192 ~~~~~L~~~l-~~~~~~~q~~il~~l~~~~~~~~~~~~~--~~~i~~l~~~l~-s~~~~V~~e~~~~i~~l~~~~~---- 263 (526)
T PF01602_consen 192 KLIRILCQLL-SDPDPWLQIKILRLLRRYAPMEPEDADK--NRIIEPLLNLLQ-SSSPSVVYEAIRLIIKLSPSPE---- 263 (526)
T ss_dssp HHHHHHHHHH-TCCSHHHHHHHHHHHTTSTSSSHHHHHH--HHHHHHHHHHHH-HHHHHHHHHHHHHHHHHSSSHH----
T ss_pred HHHHHhhhcc-cccchHHHHHHHHHHHhcccCChhhhhH--HHHHHHHHHHhh-ccccHHHHHHHHHHHHhhcchH----
Confidence 1234444444 4789999999999999887653222210 456788888886 4678999999999999887766
Q ss_pred HHhccHHHHHHHHhcCCCHHHHHHHHHHHHHhhccchhhhhhcchhhhHHHhhcChHHHHHHhhcCCCHHHHHHHHHHHH
Q 006114 528 LEEDGAIKALLAMVRSGNIDVIAQVARGLANFAKCESRAIVQGQRKGRSHLMEDSALEWLIANSKTNSASTRRHVELALC 607 (660)
Q Consensus 528 iv~~G~V~~Lv~lL~s~~~~v~~~Al~aLanLA~~~~~~~aq~~~e~r~~Li~~G~v~~Lv~lL~s~d~~vr~~Aa~AL~ 607 (660)
.-..+++.|+.++.+++++++..++.+|..++...+. .+. .....+..+..+++..++..+...|.
T Consensus 264 -~~~~~~~~L~~lL~s~~~nvr~~~L~~L~~l~~~~~~-----------~v~--~~~~~~~~l~~~~d~~Ir~~~l~lL~ 329 (526)
T PF01602_consen 264 -LLQKAINPLIKLLSSSDPNVRYIALDSLSQLAQSNPP-----------AVF--NQSLILFFLLYDDDPSIRKKALDLLY 329 (526)
T ss_dssp -HHHHHHHHHHHHHTSSSHHHHHHHHHHHHHHCCHCHH-----------HHG--THHHHHHHHHCSSSHHHHHHHHHHHH
T ss_pred -HHHhhHHHHHHHhhcccchhehhHHHHHHHhhcccch-----------hhh--hhhhhhheecCCCChhHHHHHHHHHh
Confidence 4447889999999999999999999999999965421 121 22222333344788999999999999
Q ss_pred HhhcCCccHHHHHhcCcHHHHHHHHhcCChHHHHHHHH
Q 006114 608 HLAQNEDNARDFISRGGAKELVQISIESSREDIRNLAK 645 (660)
Q Consensus 608 nLa~~~e~~~~Ive~G~l~~Lv~lL~s~s~~~ir~~A~ 645 (660)
.++..... .. +++.|...+...++.+++..+.
T Consensus 330 ~l~~~~n~-~~-----Il~eL~~~l~~~~d~~~~~~~i 361 (526)
T PF01602_consen 330 KLANESNV-KE-----ILDELLKYLSELSDPDFRRELI 361 (526)
T ss_dssp HH--HHHH-HH-----HHHHHHHHHHHC--HHHHHHHH
T ss_pred hcccccch-hh-----HHHHHHHHHHhccchhhhhhHH
Confidence 99864422 22 5677777775443443443333
No 52
>PRK02224 chromosome segregation protein; Provisional
Probab=98.22 E-value=0.014 Score=70.99 Aligned_cols=33 Identities=21% Similarity=0.153 Sum_probs=22.3
Q ss_pred HHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHH
Q 006114 284 HELCVKLKETRQLHESAVYEVQTLKSEYKNLLE 316 (660)
Q Consensus 284 ~~Lk~~Le~e~~~~e~~e~E~~~lks~l~~l~~ 316 (660)
......+++....++.+.+++..|++.+.++..
T Consensus 526 ~~~~e~le~~~~~~~~l~~e~~~l~~~~~~~~~ 558 (880)
T PRK02224 526 AERRETIEEKRERAEELRERAAELEAEAEEKRE 558 (880)
T ss_pred HHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 444556666677777777777777777765554
No 53
>TIGR02169 SMC_prok_A chromosome segregation protein SMC, primarily archaeal type. SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. It is found in a single copy and is homodimeric in prokaryotes, but six paralogs (excluded from this family) are found in eukarotes, where SMC proteins are heterodimeric. This family represents the SMC protein of archaea and a few bacteria (Aquifex, Synechocystis, etc); the SMC of other bacteria is described by TIGR02168. The N- and C-terminal domains of this protein are well conserved, but the central hinge region is skewed in composition and highly divergent.
Probab=98.21 E-value=0.0051 Score=76.59 Aligned_cols=21 Identities=24% Similarity=0.276 Sum_probs=10.4
Q ss_pred hhHHHHHHHHHHHHHHHHHhh
Q 006114 63 DNLVTQVELLTAKIEMQQKLR 83 (660)
Q Consensus 63 ~~~~~~~~~~~~~~~~~~~~~ 83 (660)
..|..|+..+....+-.++++
T Consensus 194 ~~L~~q~~~l~~~~e~~~~~~ 214 (1164)
T TIGR02169 194 DEKRQQLERLRREREKAERYQ 214 (1164)
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 344445555555555444443
No 54
>KOG1293 consensus Proteins containing armadillo/beta-catenin-like repeat [General function prediction only]
Probab=98.19 E-value=1.9e-05 Score=89.15 Aligned_cols=202 Identities=13% Similarity=0.136 Sum_probs=140.9
Q ss_pred HHhCCCHHHHHHhhC------CCCHHHHHHHHH---HHHHhhCC--chhHHHHHHcCCHHHHHHHHccCCCHHHHHHHHH
Q 006114 403 ICDEVGLPKILQLLT------SEDPDVQIHAVK---VVANLAAE--DINQEKIVEEGGLDALLLLLRTSQNTTILRVASG 471 (660)
Q Consensus 403 I~e~ggI~~LV~LL~------s~d~~vr~~Aa~---aL~nLa~~--~en~~~Ive~GgI~~Lv~LL~~s~d~~v~~~Aa~ 471 (660)
..+...++.++.++. +.++..+..++. ++..++.. -.++..+...- +......+....|......||.
T Consensus 321 ~~e~~~~~~~~ellf~~~sl~a~~~~~~~i~l~e~~i~~~~~~~~~i~~~k~~l~~~-t~~~l~~~~~~kd~~~~aaa~l 399 (678)
T KOG1293|consen 321 QHEEATLKTTTELLFICASLAASDEKYRLILLNETLILNHLEYGLEISLKKEILETT-TESHLMCLPPIKDHDFVAAALL 399 (678)
T ss_pred HhhhhhhhhHHHHHHHHHHHhhcchhhhHHHhhhhhhhhhhhhhcchhHHHHHHHHH-HHHHHccccccccHHHHHHHHH
Confidence 345556666665553 344444433322 22222221 22344444332 2222233333567888888888
Q ss_pred HHHHhhcC-chhHHHHHhcCccHHHHHhhcCCCCHHHHHHHHHHHHHHh-cChhHHHHHHhccHHHHHHHHhcCCCHHHH
Q 006114 472 AIANLAMN-EMNQGLIMSRGGGQLLAKTASKTDDPQTLRMVAGALANLC-GNEKLHTMLEEDGAIKALLAMVRSGNIDVI 549 (660)
Q Consensus 472 AL~nLA~~-~~n~~~Ive~g~I~~Ll~LL~~s~d~~v~~~Aa~aLanLa-~~~~~r~~iv~~G~V~~Lv~lL~s~~~~v~ 549 (660)
++.+++.. ...+.-+-..+++.+|+.++.+ ++..+...+.|+|+|+. ...+.+..++..|||..+..++.++++.++
T Consensus 400 ~~~s~srsV~aL~tg~~~~dv~~plvqll~d-p~~~i~~~~lgai~NlVmefs~~kskfl~~ngId~l~s~~~~~~~n~r 478 (678)
T KOG1293|consen 400 CLKSFSRSVSALRTGLKRNDVAQPLVQLLMD-PEIMIMGITLGAICNLVMEFSNLKSKFLRNNGIDILESMLTDPDFNSR 478 (678)
T ss_pred HHHHHHHHHHHHHcCCccchhHHHHHHHhhC-cchhHHHHHHHHHHHHHhhcccHHHHHHHcCcHHHHHHHhcCCCchHH
Confidence 88888765 4444445567889999999965 77788889999999998 778899999999999999999999999999
Q ss_pred HHHHHHHHHhhccchhhhhhcchhhhHHHhhcChHHHHHHhhcCCCHHHHHHHHHHHHHhhcCC
Q 006114 550 AQVARGLANFAKCESRAIVQGQRKGRSHLMEDSALEWLIANSKTNSASTRRHVELALCHLAQNE 613 (660)
Q Consensus 550 ~~Al~aLanLA~~~~~~~aq~~~e~r~~Li~~G~v~~Lv~lL~s~d~~vr~~Aa~AL~nLa~~~ 613 (660)
..+.++|+++.+.+.+. -.......=+...+..+.++++..|++.+...|+||..+.
T Consensus 479 ~~~~~~Lr~l~f~~de~-------~k~~~~~ki~a~~i~~l~nd~d~~Vqeq~fqllRNl~c~~ 535 (678)
T KOG1293|consen 479 ANSLWVLRHLMFNCDEE-------EKFQLLAKIPANLILDLINDPDWAVQEQCFQLLRNLTCNS 535 (678)
T ss_pred HHHHHHHHHHHhcchHH-------HHHHHHHHhhHHHHHHHHhCCCHHHHHHHHHHHHHhhcCc
Confidence 99999999999875432 1222333334556777788999999999999999997765
No 55
>KOG2973 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.19 E-value=5.5e-05 Score=79.05 Aligned_cols=197 Identities=20% Similarity=0.219 Sum_probs=139.0
Q ss_pred HHHHHHhhCCCCHHHHHHHHHHHHHhhCCchhHHHHH-HcCCHHHHHHHHccCCCHHHHHHHHHHHHHhhcCchhHHHHH
Q 006114 409 LPKILQLLTSEDPDVQIHAVKVVANLAAEDINQEKIV-EEGGLDALLLLLRTSQNTTILRVASGAIANLAMNEMNQGLIM 487 (660)
Q Consensus 409 I~~LV~LL~s~d~~vr~~Aa~aL~nLa~~~en~~~Iv-e~GgI~~Lv~LL~~s~d~~v~~~Aa~AL~nLA~~~~n~~~Iv 487 (660)
+-.++.++.+.++.|+..|+..+.+++.. ..+.... +.-.++.|..++. ..++ .+.|+.+|.|++..+..++.++
T Consensus 5 l~elv~ll~~~sP~v~~~AV~~l~~lt~~-~~~~~~~~~~~~lk~l~qL~~-~~~~--~~~a~~alVnlsq~~~l~~~ll 80 (353)
T KOG2973|consen 5 LVELVELLHSLSPPVRKAAVEHLLGLTGR-GLQSLSKYSEALLKDLTQLLK-DLDP--AEPAATALVNLSQKEELRKKLL 80 (353)
T ss_pred HHHHHHHhccCChHHHHHHHHHHhhcccc-chhhhccchhhhHHHHHHHcc-Cccc--ccHHHHHHHHHHhhHHHHHHHH
Confidence 34578899999999999999999998887 3333222 2334888999997 4444 5679999999999999999988
Q ss_pred hcCccHHHHHhhcCCCCHHHHHHHHHHHHHHhcChhHHHHHHh-------ccHHHHHHHHhcCC-CH-HHHHHHHHHHHH
Q 006114 488 SRGGGQLLAKTASKTDDPQTLRMVAGALANLCGNEKLHTMLEE-------DGAIKALLAMVRSG-NI-DVIAQVARGLAN 558 (660)
Q Consensus 488 e~g~I~~Ll~LL~~s~d~~v~~~Aa~aLanLa~~~~~r~~iv~-------~G~V~~Lv~lL~s~-~~-~v~~~Al~aLan 558 (660)
.. .+..++..+.++.+ .....+|.+|+|++..++....+.. .|.+.......+.+ +. .-....+.+++|
T Consensus 81 ~~-~~k~l~~~~~~p~~-~lad~~cmlL~NLs~~~~~~~~ll~~~~~~~~~~lm~l~~~~~d~~~n~~a~f~ylA~vf~n 158 (353)
T KOG2973|consen 81 QD-LLKVLMDMLTDPQS-PLADLICMLLSNLSRDDDEVAALLTNLTEKKDSGLMRLARAFCDKSYNAYAEFHYLAPVFAN 158 (353)
T ss_pred HH-HHHHHHHHhcCccc-chHHHHHHHHHHhccCchHHHHHHHhcccccccchHHHHHHHhCcccccccchhHHHHHHHH
Confidence 87 77778888876433 4666788899999977766555432 34444444555433 21 234556677778
Q ss_pred hhccchhhhhhcchhhhHHHhhcChHH--HHHHhhcCCCHHHHH-HHHHHHHHhhcCCccHHHHHh
Q 006114 559 FAKCESRAIVQGQRKGRSHLMEDSALE--WLIANSKTNSASTRR-HVELALCHLAQNEDNARDFIS 621 (660)
Q Consensus 559 LA~~~~~~~aq~~~e~r~~Li~~G~v~--~Lv~lL~s~d~~vr~-~Aa~AL~nLa~~~e~~~~Ive 621 (660)
|+.. ..||..+.....+| .+..+.. .+..||+ ..+++|.|+|.+..++..+..
T Consensus 159 ls~~---------~~gR~l~~~~k~~p~~kll~ft~-~~s~vRr~GvagtlkN~cFd~~~h~~lL~ 214 (353)
T KOG2973|consen 159 LSQF---------EAGRKLLLEPKRFPDQKLLPFTS-EDSQVRRGGVAGTLKNCCFDAKLHEVLLD 214 (353)
T ss_pred Hhhh---------hhhhhHhcchhhhhHhhhhcccc-cchhhhccchHHHHHhhhccchhHHHHhc
Confidence 7754 56888888866554 3334334 5677765 488999999999888877775
No 56
>PRK02224 chromosome segregation protein; Provisional
Probab=98.16 E-value=0.023 Score=69.15 Aligned_cols=29 Identities=10% Similarity=0.224 Sum_probs=14.2
Q ss_pred HHHHHHHHHHHHHHhhhhHHHHHHHHhhC
Q 006114 325 LQAARQRLLVEEKQRKAIEYELVKLKKTA 353 (660)
Q Consensus 325 l~~~~k~l~~e~~~rkkLe~E~~~l~~~l 353 (660)
+......+.+.......+..++..+....
T Consensus 525 ~~~~~e~le~~~~~~~~l~~e~~~l~~~~ 553 (880)
T PRK02224 525 IAERRETIEEKRERAEELRERAAELEAEA 553 (880)
T ss_pred HHHHHHHHHhHHHHHHHHHHHHHHHHHHH
Confidence 33344444444444555555555554433
No 57
>KOG0946 consensus ER-Golgi vesicle-tethering protein p115 [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.15 E-value=0.00024 Score=81.67 Aligned_cols=267 Identities=15% Similarity=0.149 Sum_probs=186.2
Q ss_pred chhhhhhcccCCC-ccccccchhhhhhcCchhHHHHHhCCCHHHHHHhhCC--CCHHHHHHHHHHHHHhhCCch------
Q 006114 369 DYISKGSSRFGAP-MSLQKSNPSRELSGQRATIAKICDEVGLPKILQLLTS--EDPDVQIHAVKVVANLAAEDI------ 439 (660)
Q Consensus 369 g~i~~l~~~L~~~-~~~vr~~~~~~laa~~~~~~~I~e~ggI~~LV~LL~s--~d~~vr~~Aa~aL~nLa~~~e------ 439 (660)
..|+++..-+.+. ...-|+++.+.+-+-....+..++..|+++|+..|.. .|+++-..++.++.++..+++
T Consensus 22 ETI~kLcDRvessTL~eDRR~A~rgLKa~srkYR~~Vga~Gmk~li~vL~~D~~D~E~ik~~LdTl~il~~~dd~~~v~d 101 (970)
T KOG0946|consen 22 ETIEKLCDRVESSTLLEDRRDAVRGLKAFSRKYREEVGAQGMKPLIQVLQRDYMDPEIIKYALDTLLILTSHDDSPEVMD 101 (970)
T ss_pred hHHHHHHHHHhhccchhhHHHHHHHHHHHHHHHHHHHHHcccHHHHHHHhhccCCHHHHHHHHHHHHHHHhcCcchhhcc
Confidence 4455554443322 1122444444433333345556788999999999974 588999999999999887542
Q ss_pred h-----------HHHHH-HcCCHHHHHHHHccCCCHHHHHHHHHHHHHhhcC--chhHHHHHh-cCccHHHHHhhcCCCC
Q 006114 440 N-----------QEKIV-EEGGLDALLLLLRTSQNTTILRVASGAIANLAMN--EMNQGLIMS-RGGGQLLAKTASKTDD 504 (660)
Q Consensus 440 n-----------~~~Iv-e~GgI~~Lv~LL~~s~d~~v~~~Aa~AL~nLA~~--~~n~~~Ive-~g~I~~Ll~LL~~s~d 504 (660)
+ ...++ ..+-|..|+..+. ..|--||..+...|.++-.+ ++.+..+.. .-||..|+.+|.+ ..
T Consensus 102 ds~qsdd~g~~iae~fik~qd~I~lll~~~e-~~DF~VR~~aIqLlsalls~r~~e~q~~ll~~P~gIS~lmdlL~D-sr 179 (970)
T KOG0946|consen 102 DSTQSDDLGLWIAEQFIKNQDNITLLLQSLE-EFDFHVRLYAIQLLSALLSCRPTELQDALLVSPMGISKLMDLLRD-SR 179 (970)
T ss_pred cchhhhHHHHHHHHHHHcCchhHHHHHHHHH-hhchhhhhHHHHHHHHHHhcCCHHHHHHHHHCchhHHHHHHHHhh-hh
Confidence 1 22233 4566888899887 67889999999999999766 667777765 7789999999976 44
Q ss_pred HHHHHHHHHHHHHHh-cChhHHHHHHhccHHHHHHHHhcC---CC-HHHHHHHHHHHHHhhccchhhhhhcchhhhHHHh
Q 006114 505 PQTLRMVAGALANLC-GNEKLHTMLEEDGAIKALLAMVRS---GN-IDVIAQVARGLANFAKCESRAIVQGQRKGRSHLM 579 (660)
Q Consensus 505 ~~v~~~Aa~aLanLa-~~~~~r~~iv~~G~V~~Lv~lL~s---~~-~~v~~~Al~aLanLA~~~~~~~aq~~~e~r~~Li 579 (660)
..++-.|.-.|+.|+ .++..+..++=.+++..|++++.. .+ .-|..-|+..|-||-..+ ..+..++.
T Consensus 180 E~IRNe~iLlL~eL~k~n~~IQKlVAFENaFerLfsIIeeEGg~dGgIVveDCL~ll~NLLK~N--------~SNQ~~Fr 251 (970)
T KOG0946|consen 180 EPIRNEAILLLSELVKDNSSIQKLVAFENAFERLFSIIEEEGGLDGGIVVEDCLILLNNLLKNN--------ISNQNFFR 251 (970)
T ss_pred hhhchhHHHHHHHHHccCchHHHHHHHHHHHHHHHHHHHhcCCCCCcchHHHHHHHHHHHHhhC--------cchhhHHh
Confidence 456777778888998 556666666667999999999983 23 357888999999998765 35677899
Q ss_pred hcChHHHHHHhhcCC---C-------HH-H--HHHHHHHHHHhhcCC-------ccHHHHHhcCcHHHHHHHHhcCC-hH
Q 006114 580 EDSALEWLIANSKTN---S-------AS-T--RRHVELALCHLAQNE-------DNARDFISRGGAKELVQISIESS-RE 638 (660)
Q Consensus 580 ~~G~v~~Lv~lL~s~---d-------~~-v--r~~Aa~AL~nLa~~~-------e~~~~Ive~G~l~~Lv~lL~s~s-~~ 638 (660)
+.+.+|.|.++|... | ++ | ...|..++..+.... .+...+...+++..||.++-++. +.
T Consensus 252 E~~~i~rL~klL~~f~~~d~Ev~~W~~Qrv~Nv~~~Lqivr~lVsP~Nt~~~~~q~qk~l~ss~ll~~Lc~il~~~~vp~ 331 (970)
T KOG0946|consen 252 EGSYIPRLLKLLSVFEFGDGEVFGWSTQRVQNVIEALQIVRSLVSPGNTSSITHQNQKALVSSHLLDVLCTILMHPGVPA 331 (970)
T ss_pred ccccHHHHHhhcCcccccCcccccccHHHHHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHHcchHHHHHHHHcCCCCcH
Confidence 999999999887652 2 11 1 223444455554322 23457889999999999998874 44
Q ss_pred HHHHHHH
Q 006114 639 DIRNLAK 645 (660)
Q Consensus 639 ~ir~~A~ 645 (660)
++..-+.
T Consensus 332 dIltesi 338 (970)
T KOG0946|consen 332 DILTESI 338 (970)
T ss_pred hHHHHHH
Confidence 4555444
No 58
>KOG1293 consensus Proteins containing armadillo/beta-catenin-like repeat [General function prediction only]
Probab=98.15 E-value=6.2e-05 Score=85.13 Aligned_cols=143 Identities=17% Similarity=0.143 Sum_probs=115.4
Q ss_pred CCCHHHHHHHHHHHHHhhC-CchhHHHHHHcCCHHHHHHHHccCCCHHHHHHHHHHHHHhhcC-chhHHHHHhcCccHHH
Q 006114 418 SEDPDVQIHAVKVVANLAA-EDINQEKIVEEGGLDALLLLLRTSQNTTILRVASGAIANLAMN-EMNQGLIMSRGGGQLL 495 (660)
Q Consensus 418 s~d~~vr~~Aa~aL~nLa~-~~en~~~Ive~GgI~~Lv~LL~~s~d~~v~~~Aa~AL~nLA~~-~~n~~~Ive~g~I~~L 495 (660)
..|.+++.+|+-.+.+++. -...+......+++.+|+.+|. +|+..|...+.++|.||.+. .+.+..+...|||..+
T Consensus 388 ~kd~~~~aaa~l~~~s~srsV~aL~tg~~~~dv~~plvqll~-dp~~~i~~~~lgai~NlVmefs~~kskfl~~ngId~l 466 (678)
T KOG1293|consen 388 IKDHDFVAAALLCLKSFSRSVSALRTGLKRNDVAQPLVQLLM-DPEIMIMGITLGAICNLVMEFSNLKSKFLRNNGIDIL 466 (678)
T ss_pred cccHHHHHHHHHHHHHHHHHHHHHHcCCccchhHHHHHHHhh-CcchhHHHHHHHHHHHHHhhcccHHHHHHHcCcHHHH
Confidence 4578888888888877776 3444555667789999999995 88889999999999999987 7889999999999999
Q ss_pred HHhhcCCCCHHHHHHHHHHHHHHhcChhH-HHHHHhcc-HHHHHHHHhcCCCHHHHHHHHHHHHHhhcc
Q 006114 496 AKTASKTDDPQTLRMVAGALANLCGNEKL-HTMLEEDG-AIKALLAMVRSGNIDVIAQVARGLANFAKC 562 (660)
Q Consensus 496 l~LL~~s~d~~v~~~Aa~aLanLa~~~~~-r~~iv~~G-~V~~Lv~lL~s~~~~v~~~Al~aLanLA~~ 562 (660)
...+.+ +++.++..+.|+|+++..+.+. ........ +...|+.+...+++.|++.|...|+||.-+
T Consensus 467 ~s~~~~-~~~n~r~~~~~~Lr~l~f~~de~~k~~~~~ki~a~~i~~l~nd~d~~Vqeq~fqllRNl~c~ 534 (678)
T KOG1293|consen 467 ESMLTD-PDFNSRANSLWVLRHLMFNCDEEEKFQLLAKIPANLILDLINDPDWAVQEQCFQLLRNLTCN 534 (678)
T ss_pred HHHhcC-CCchHHHHHHHHHHHHHhcchHHHHHHHHHHhhHHHHHHHHhCCCHHHHHHHHHHHHHhhcC
Confidence 999975 8889999999999999954433 33222223 334567778899999999999999999843
No 59
>KOG2171 consensus Karyopherin (importin) beta 3 [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=98.14 E-value=0.00012 Score=87.32 Aligned_cols=187 Identities=17% Similarity=0.101 Sum_probs=128.8
Q ss_pred HHHHHHhhCCCCHHHHHHHHHHHHHhhC-CchhHHHHHHcCCHHHHHHHHccCCCHHHHHHHHHHHHHhhcC--chhHHH
Q 006114 409 LPKILQLLTSEDPDVQIHAVKVVANLAA-EDINQEKIVEEGGLDALLLLLRTSQNTTILRVASGAIANLAMN--EMNQGL 485 (660)
Q Consensus 409 I~~LV~LL~s~d~~vr~~Aa~aL~nLa~-~~en~~~Ive~GgI~~Lv~LL~~s~d~~v~~~Aa~AL~nLA~~--~~n~~~ 485 (660)
++.+-.++.|++..-|.+|+.+|+.++. ..+........ .++.+++.|+ +++|.||..||.||+.++.+ |..++.
T Consensus 350 ~~~l~~~l~S~~w~~R~AaL~Als~i~EGc~~~m~~~l~~-Il~~Vl~~l~-DphprVr~AA~naigQ~stdl~p~iqk~ 427 (1075)
T KOG2171|consen 350 FEALEAMLQSTEWKERHAALLALSVIAEGCSDVMIGNLPK-ILPIVLNGLN-DPHPRVRYAALNAIGQMSTDLQPEIQKK 427 (1075)
T ss_pred HHHHHHHhcCCCHHHHHHHHHHHHHHHcccHHHHHHHHHH-HHHHHHhhcC-CCCHHHHHHHHHHHHhhhhhhcHHHHHH
Confidence 4455577789999999999999999887 34333322222 4677778887 89999999999999999988 555444
Q ss_pred HHhcCccHHHHHhhcCCCCHHHHHHHHHHHHHHhc-ChhHHHHHHhccHHH-HHHHHhcCCCHHHHHHHHHHHHHhhccc
Q 006114 486 IMSRGGGQLLAKTASKTDDPQTLRMVAGALANLCG-NEKLHTMLEEDGAIK-ALLAMVRSGNIDVIAQVARGLANFAKCE 563 (660)
Q Consensus 486 Ive~g~I~~Ll~LL~~s~d~~v~~~Aa~aLanLa~-~~~~r~~iv~~G~V~-~Lv~lL~s~~~~v~~~Al~aLanLA~~~ 563 (660)
-- .-++|.|+..+.+..++.|+..|+.++-|++. ++...-.=.=.+.+. .+.-++.++.+.++..|+.+|+.+|..
T Consensus 428 ~~-e~l~~aL~~~ld~~~~~rV~ahAa~al~nf~E~~~~~~l~pYLd~lm~~~l~~L~~~~~~~v~e~vvtaIasvA~A- 505 (1075)
T KOG2171|consen 428 HH-ERLPPALIALLDSTQNVRVQAHAAAALVNFSEECDKSILEPYLDGLMEKKLLLLLQSSKPYVQEQAVTAIASVADA- 505 (1075)
T ss_pred HH-HhccHHHHHHhcccCchHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHHH-
Confidence 43 44778999999988999999999999999873 222111001124444 333445688999999999999999853
Q ss_pred hhhhhhcchhhhHHHhh--cChHHHHHHhhcCCC-H---HHHHHHHHHHHHh
Q 006114 564 SRAIVQGQRKGRSHLME--DSALEWLIANSKTNS-A---STRRHVELALCHL 609 (660)
Q Consensus 564 ~~~~aq~~~e~r~~Li~--~G~v~~Lv~lL~s~d-~---~vr~~Aa~AL~nL 609 (660)
....++. ...+|.|...+.+.+ . .+|.....++.-+
T Consensus 506 ----------A~~~F~pY~d~~Mp~L~~~L~n~~~~d~r~LrgktmEcisli 547 (1075)
T KOG2171|consen 506 ----------AQEKFIPYFDRLMPLLKNFLQNADDKDLRELRGKTMECLSLI 547 (1075)
T ss_pred ----------HhhhhHhHHHHHHHHHHHHHhCCCchhhHHHHhhHHHHHHHH
Confidence 2223333 457788888877654 2 2444444444433
No 60
>COG1196 Smc Chromosome segregation ATPases [Cell division and chromosome partitioning]
Probab=98.05 E-value=0.017 Score=72.51 Aligned_cols=23 Identities=22% Similarity=0.354 Sum_probs=11.9
Q ss_pred HHHHhhHHHHHHHHHHHHHHHHH
Q 006114 59 DEAKDNLVTQVELLTAKIEMQQK 81 (660)
Q Consensus 59 ~~~~~~~~~~~~~~~~~~~~~~~ 81 (660)
++....|++|+++|..+.+.-++
T Consensus 192 ~~~~~el~~~l~~L~~q~~~a~~ 214 (1163)
T COG1196 192 EDLLEELEKQLEKLERQAEKAER 214 (1163)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 44445555666665555444433
No 61
>KOG0946 consensus ER-Golgi vesicle-tethering protein p115 [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.05 E-value=0.00022 Score=81.98 Aligned_cols=215 Identities=16% Similarity=0.166 Sum_probs=164.0
Q ss_pred CHHHHHHhh-CCCCHHHHHHHHHHHHHhhCCchhHHHHHHcCCHHHHHHHHccC-CCHHHHHHHHHHHHHhhcCch----
Q 006114 408 GLPKILQLL-TSEDPDVQIHAVKVVANLAAEDINQEKIVEEGGLDALLLLLRTS-QNTTILRVASGAIANLAMNEM---- 481 (660)
Q Consensus 408 gI~~LV~LL-~s~d~~vr~~Aa~aL~nLa~~~en~~~Ive~GgI~~Lv~LL~~s-~d~~v~~~Aa~AL~nLA~~~~---- 481 (660)
.|+.||.-+ .+.-.+-|+.|+..|..++.. .|.. +.+.|+++|+..|.++ .|+++...+.-.++++..+++
T Consensus 23 TI~kLcDRvessTL~eDRR~A~rgLKa~srk--YR~~-Vga~Gmk~li~vL~~D~~D~E~ik~~LdTl~il~~~dd~~~v 99 (970)
T KOG0946|consen 23 TIEKLCDRVESSTLLEDRRDAVRGLKAFSRK--YREE-VGAQGMKPLIQVLQRDYMDPEIIKYALDTLLILTSHDDSPEV 99 (970)
T ss_pred HHHHHHHHHhhccchhhHHHHHHHHHHHHHH--HHHH-HHHcccHHHHHHHhhccCCHHHHHHHHHHHHHHHhcCcchhh
Confidence 588888555 466678899999999877653 3333 4455899999999764 589999999999999987752
Q ss_pred --h-----------HHHHH-hcCccHHHHHhhcCCCCHHHHHHHHHHHHHHh--cChhHHHHHHh-ccHHHHHHHHhcCC
Q 006114 482 --N-----------QGLIM-SRGGGQLLAKTASKTDDPQTLRMVAGALANLC--GNEKLHTMLEE-DGAIKALLAMVRSG 544 (660)
Q Consensus 482 --n-----------~~~Iv-e~g~I~~Ll~LL~~s~d~~v~~~Aa~aLanLa--~~~~~r~~iv~-~G~V~~Lv~lL~s~ 544 (660)
+ .+.+. ..|.|..|+..+.. .|..|++.+...|.++- ..++.+..+.. .-||..|+.+++..
T Consensus 100 ~dds~qsdd~g~~iae~fik~qd~I~lll~~~e~-~DF~VR~~aIqLlsalls~r~~e~q~~ll~~P~gIS~lmdlL~Ds 178 (970)
T KOG0946|consen 100 MDDSTQSDDLGLWIAEQFIKNQDNITLLLQSLEE-FDFHVRLYAIQLLSALLSCRPTELQDALLVSPMGISKLMDLLRDS 178 (970)
T ss_pred cccchhhhHHHHHHHHHHHcCchhHHHHHHHHHh-hchhhhhHHHHHHHHHHhcCCHHHHHHHHHCchhHHHHHHHHhhh
Confidence 1 22222 36778888888865 78899999999999885 55677777655 58999999999999
Q ss_pred CHHHHHHHHHHHHHhhccchhhhhhcchhhhHHHhhcChHHHHHHhhcCC---CH-HHHHHHHHHHHHhhcCC-ccHHHH
Q 006114 545 NIDVIAQVARGLANFAKCESRAIVQGQRKGRSHLMEDSALEWLIANSKTN---SA-STRRHVELALCHLAQNE-DNARDF 619 (660)
Q Consensus 545 ~~~v~~~Al~aLanLA~~~~~~~aq~~~e~r~~Li~~G~v~~Lv~lL~s~---d~-~vr~~Aa~AL~nLa~~~-e~~~~I 619 (660)
...++..|+..|..++.+++. ....+.=.++...|..++... |. -|..-|...|-||-.+. .|...+
T Consensus 179 rE~IRNe~iLlL~eL~k~n~~--------IQKlVAFENaFerLfsIIeeEGg~dGgIVveDCL~ll~NLLK~N~SNQ~~F 250 (970)
T KOG0946|consen 179 REPIRNEAILLLSELVKDNSS--------IQKLVAFENAFERLFSIIEEEGGLDGGIVVEDCLILLNNLLKNNISNQNFF 250 (970)
T ss_pred hhhhchhHHHHHHHHHccCch--------HHHHHHHHHHHHHHHHHHHhcCCCCCcchHHHHHHHHHHHHhhCcchhhHH
Confidence 999999999999999987653 344555578888888888663 23 46666777777887644 777888
Q ss_pred HhcCcHHHHHHHHhc
Q 006114 620 ISRGGAKELVQISIE 634 (660)
Q Consensus 620 ve~G~l~~Lv~lL~s 634 (660)
.+.|-||.|..++..
T Consensus 251 rE~~~i~rL~klL~~ 265 (970)
T KOG0946|consen 251 REGSYIPRLLKLLSV 265 (970)
T ss_pred hccccHHHHHhhcCc
Confidence 888999999877653
No 62
>PF05536 Neurochondrin: Neurochondrin
Probab=98.04 E-value=0.00045 Score=79.36 Aligned_cols=232 Identities=19% Similarity=0.120 Sum_probs=157.0
Q ss_pred CHHHHHHhhCCCCHHHHHHHHHHHHHhhCC-ch---hHHHHHHcCCHHHHHHHHccCC------CHHHHHHHHHHHHHhh
Q 006114 408 GLPKILQLLTSEDPDVQIHAVKVVANLAAE-DI---NQEKIVEEGGLDALLLLLRTSQ------NTTILRVASGAIANLA 477 (660)
Q Consensus 408 gI~~LV~LL~s~d~~vr~~Aa~aL~nLa~~-~e---n~~~Ive~GgI~~Lv~LL~~s~------d~~v~~~Aa~AL~nLA 477 (660)
.+...+.+|++.+.+-+-.++..+..+... +. .+..|.++=|.+.|-++|+++. ....+.-|..+|+.+|
T Consensus 6 ~l~~c~~lL~~~~D~~rfagL~lvtk~~~~~~~~~~~~~~v~~aig~~Fl~RLL~t~~~~~~~~~~~~~~LavsvL~~f~ 85 (543)
T PF05536_consen 6 SLEKCLSLLKSADDTERFAGLLLVTKLLDADDEDSQTRRRVFEAIGFKFLDRLLRTGSVPSDCPPEEYLSLAVSVLAAFC 85 (543)
T ss_pred HHHHHHHHhccCCcHHHHHHHHHHHHcCCCchhhHHHHHHHHHhcChhHHHHHhcCCCCCCCCCHHHHHHHHHHHHHHHc
Confidence 467788999999877777788888888873 32 2456888889999999998632 2345666888899999
Q ss_pred cCchhHHHHHhcCccHHHHHhhcCCCCHHHHHHHHHHHHHHhcChhHHHHHHhccHHHHHHHHhcCCCHHHHHHHHHHHH
Q 006114 478 MNEMNQGLIMSRGGGQLLAKTASKTDDPQTLRMVAGALANLCGNEKLHTMLEEDGAIKALLAMVRSGNIDVIAQVARGLA 557 (660)
Q Consensus 478 ~~~~n~~~Ive~g~I~~Ll~LL~~s~d~~v~~~Aa~aLanLa~~~~~r~~iv~~G~V~~Lv~lL~s~~~~v~~~Al~aLa 557 (660)
..|+....---.+-||.|+.++..+++..+...|..+|..++.+|+++..+++.|+++.|+..+.+ ++.....|+.++.
T Consensus 86 ~~~~~a~~~~~~~~IP~Lle~l~~~s~~~~v~dalqcL~~Ias~~~G~~aLl~~g~v~~L~ei~~~-~~~~~E~Al~lL~ 164 (543)
T PF05536_consen 86 RDPELASSPQMVSRIPLLLEILSSSSDLETVDDALQCLLAIASSPEGAKALLESGAVPALCEIIPN-QSFQMEIALNLLL 164 (543)
T ss_pred CChhhhcCHHHHHHHHHHHHHHHcCCchhHHHHHHHHHHHHHcCcHhHHHHHhcCCHHHHHHHHHh-CcchHHHHHHHHH
Confidence 887765443334579999999987666689999999999999999999999999999999999987 6677888999999
Q ss_pred HhhccchhhhhhcchhhhHHHhhcChHHHHHHhhcCCCHHHHHHHHHHHHHhhcCCc------cHHHHHhcCcHHHHHHH
Q 006114 558 NFAKCESRAIVQGQRKGRSHLMEDSALEWLIANSKTNSASTRRHVELALCHLAQNED------NARDFISRGGAKELVQI 631 (660)
Q Consensus 558 nLA~~~~~~~aq~~~e~r~~Li~~G~v~~Lv~lL~s~d~~vr~~Aa~AL~nLa~~~e------~~~~Ive~G~l~~Lv~l 631 (660)
+++........ ...-. .-...++.+...........+-.++..|..+-...+ ....-+-..+...|-.+
T Consensus 165 ~Lls~~~~~~~---~~~~~--~l~~il~~La~~fs~~~~~~kfell~~L~~~L~~~~~~~~~~~~~~~W~~~l~~gl~~i 239 (543)
T PF05536_consen 165 NLLSRLGQKSW---AEDSQ--LLHSILPSLARDFSSFHGEDKFELLEFLSAFLPRSPILPLESPPSPKWLSDLRKGLRDI 239 (543)
T ss_pred HHHHhcchhhh---hhhHH--HHHHHHHHHHHHHHhhccchHHHHHHHHHHhcCcCCccccccCChhhhHHHHHHHHHHH
Confidence 88754321000 00000 001234444444444444455556666666633221 11222233345556666
Q ss_pred HhcCChHHHHHHHH
Q 006114 632 SIESSREDIRNLAK 645 (660)
Q Consensus 632 L~s~s~~~ir~~A~ 645 (660)
+.+.-.+..|..|.
T Consensus 240 L~sr~~~~~R~~al 253 (543)
T PF05536_consen 240 LQSRLTPSQRDPAL 253 (543)
T ss_pred HhcCCCHHHHHHHH
Confidence 66665555555554
No 63
>TIGR02270 conserved hypothetical protein. Members are found in Myxococcus xanthus (six members), Geobacter sulfurreducens, and Pseudomonas aeruginosa; a short protein homologous to the N-terminal region is found in Mesorhizobium loti. All sequence are from Proteobacteria. The function is unknown.
Probab=98.04 E-value=0.00021 Score=79.30 Aligned_cols=191 Identities=15% Similarity=0.072 Sum_probs=129.6
Q ss_pred HHHHHHhhCCCCHHHHHHHHHHHHHhhCCchhHHHHHHcCCHHHHHHHHccCCCHHHHHHHHHHHHHhhcCchhHHHHHh
Q 006114 409 LPKILQLLTSEDPDVQIHAVKVVANLAAEDINQEKIVEEGGLDALLLLLRTSQNTTILRVASGAIANLAMNEMNQGLIMS 488 (660)
Q Consensus 409 I~~LV~LL~s~d~~vr~~Aa~aL~nLa~~~en~~~Ive~GgI~~Lv~LL~~s~d~~v~~~Aa~AL~nLA~~~~n~~~Ive 488 (660)
+..|+..|.++++.++..++.+|+. |...+..+.|+.+|. +.++.++..+..+++..-
T Consensus 88 ~~~L~~~L~d~~~~vr~aaa~ALg~----------i~~~~a~~~L~~~L~-~~~p~vR~aal~al~~r~----------- 145 (410)
T TIGR02270 88 LRSVLAVLQAGPEGLCAGIQAALGW----------LGGRQAEPWLEPLLA-ASEPPGRAIGLAALGAHR----------- 145 (410)
T ss_pred HHHHHHHhcCCCHHHHHHHHHHHhc----------CCchHHHHHHHHHhc-CCChHHHHHHHHHHHhhc-----------
Confidence 7889999999999999999999953 344456888899996 778888887777776521
Q ss_pred cCccHHHHHhhcCCCCHHHHHHHHHHHHHHhcChhHHHHHHhccHHHHHHHHhcCCCHHHHHHHHHHHHHhhccch-hhh
Q 006114 489 RGGGQLLAKTASKTDDPQTLRMVAGALANLCGNEKLHTMLEEDGAIKALLAMVRSGNIDVIAQVARGLANFAKCES-RAI 567 (660)
Q Consensus 489 ~g~I~~Ll~LL~~s~d~~v~~~Aa~aLanLa~~~~~r~~iv~~G~V~~Lv~lL~s~~~~v~~~Al~aLanLA~~~~-~~~ 567 (660)
.+..+.+..+|. ..++.|+..|+.+|+.+.. ..+++.|..++.+.++.|+..|+.+++.+-.... ..+
T Consensus 146 ~~~~~~L~~~L~-d~d~~Vra~A~raLG~l~~----------~~a~~~L~~al~d~~~~VR~aA~~al~~lG~~~A~~~l 214 (410)
T TIGR02270 146 HDPGPALEAALT-HEDALVRAAALRALGELPR----------RLSESTLRLYLRDSDPEVRFAALEAGLLAGSRLAWGVC 214 (410)
T ss_pred cChHHHHHHHhc-CCCHHHHHHHHHHHHhhcc----------ccchHHHHHHHcCCCHHHHHHHHHHHHHcCCHhHHHHH
Confidence 224578888886 4889999999999987653 3567778888899999999999999877743211 000
Q ss_pred hh-----cchhh--hHHHh----hcChHHHHHHhhcCCCHHHHHHHHHHHHHhhcCCccHHHHHhcCcHHHHHHHHhcCC
Q 006114 568 VQ-----GQRKG--RSHLM----EDSALEWLIANSKTNSASTRRHVELALCHLAQNEDNARDFISRGGAKELVQISIESS 636 (660)
Q Consensus 568 aq-----~~~e~--r~~Li----~~G~v~~Lv~lL~s~d~~vr~~Aa~AL~nLa~~~e~~~~Ive~G~l~~Lv~lL~s~s 636 (660)
.. |.+.. ...+. ...++++|..++.+.. ++..++++|+.+.. ..+++.|+..+....
T Consensus 215 ~~~~~~~g~~~~~~l~~~lal~~~~~a~~~L~~ll~d~~--vr~~a~~AlG~lg~----------p~av~~L~~~l~d~~ 282 (410)
T TIGR02270 215 RRFQVLEGGPHRQRLLVLLAVAGGPDAQAWLRELLQAAA--TRREALRAVGLVGD----------VEAAPWCLEAMREPP 282 (410)
T ss_pred HHHHhccCccHHHHHHHHHHhCCchhHHHHHHHHhcChh--hHHHHHHHHHHcCC----------cchHHHHHHHhcCcH
Confidence 00 11110 01111 1246777777777644 88888888876543 346777777775432
Q ss_pred hHHHHHHHHHH
Q 006114 637 REDIRNLAKKT 647 (660)
Q Consensus 637 ~~~ir~~A~~~ 647 (660)
++..|...
T Consensus 283 ---~aR~A~eA 290 (410)
T TIGR02270 283 ---WARLAGEA 290 (410)
T ss_pred ---HHHHHHHH
Confidence 44444433
No 64
>KOG4674 consensus Uncharacterized conserved coiled-coil protein [Function unknown]
Probab=98.03 E-value=0.013 Score=74.09 Aligned_cols=68 Identities=21% Similarity=0.243 Sum_probs=51.0
Q ss_pred HHHHHHHhhhhhhhhhhhhhhHHHHHHhhHHHHHHHHHHHHHHHHHHhhhhchHHHHHHHHHHHhhhh
Q 006114 147 IVQLEISLKNSKQQQLDNSSYQKVLADTTQMYEKKITELIKQLEIEHARSEGAEEQVDTMKKLISDNQ 214 (660)
Q Consensus 147 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~e~~~~~~~~~~~~~l~~~l~~~~ 214 (660)
..+|..++-++.|++-...+..+-+...+..|+.--.++-..++..+....++++++..|+....++.
T Consensus 918 ~~~L~~a~s~i~~yqe~~~s~eqsl~~~ks~lde~~~~~ea~ie~~~~k~tslE~~ls~L~~~~~~l~ 985 (1822)
T KOG4674|consen 918 KEELTDALSQIREYQEEYSSLEQSLESVKSELDETRLELEAKIESLHKKITSLEEELSELEKEIENLR 985 (1822)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 36677777888888888877777777777777777777777777777777777777777776666665
No 65
>KOG2973 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.01 E-value=0.00053 Score=71.88 Aligned_cols=258 Identities=18% Similarity=0.181 Sum_probs=165.8
Q ss_pred hhcccCCCccccccchhhh---hhcCchhHHHHH--hCCCHHHHHHhhCCCCHHHHHHHHHHHHHhhCCchhHHHHHHcC
Q 006114 374 GSSRFGAPMSLQKSNPSRE---LSGQRATIAKIC--DEVGLPKILQLLTSEDPDVQIHAVKVVANLAAEDINQEKIVEEG 448 (660)
Q Consensus 374 l~~~L~~~~~~vr~~~~~~---laa~~~~~~~I~--e~ggI~~LV~LL~s~d~~vr~~Aa~aL~nLa~~~en~~~Ive~G 448 (660)
++..+-++.+.++..+..- +.+. ..+.+. ....++.|.+++...++ -.-|+.+|.|++..+..+..+...
T Consensus 8 lv~ll~~~sP~v~~~AV~~l~~lt~~--~~~~~~~~~~~~lk~l~qL~~~~~~--~~~a~~alVnlsq~~~l~~~ll~~- 82 (353)
T KOG2973|consen 8 LVELLHSLSPPVRKAAVEHLLGLTGR--GLQSLSKYSEALLKDLTQLLKDLDP--AEPAATALVNLSQKEELRKKLLQD- 82 (353)
T ss_pred HHHHhccCChHHHHHHHHHHhhcccc--chhhhccchhhhHHHHHHHccCccc--ccHHHHHHHHHHhhHHHHHHHHHH-
Confidence 4445555666666555443 2222 222222 22357888898886655 557889999999999999988877
Q ss_pred CHHHHHHHHccCCCHHHHHHHHHHHHHhhcCchhHHHHHh-------cCccHHHHHhhcCCCCH-HHHHHHHHHHHHHhc
Q 006114 449 GLDALLLLLRTSQNTTILRVASGAIANLAMNEMNQGLIMS-------RGGGQLLAKTASKTDDP-QTLRMVAGALANLCG 520 (660)
Q Consensus 449 gI~~Lv~LL~~s~d~~v~~~Aa~AL~nLA~~~~n~~~Ive-------~g~I~~Ll~LL~~s~d~-~v~~~Aa~aLanLa~ 520 (660)
.+..++..+. ++...+....|.+|.|++..++....+.. .|.+.....+...+.+. .-....+..++||+.
T Consensus 83 ~~k~l~~~~~-~p~~~lad~~cmlL~NLs~~~~~~~~ll~~~~~~~~~~lm~l~~~~~d~~~n~~a~f~ylA~vf~nls~ 161 (353)
T KOG2973|consen 83 LLKVLMDMLT-DPQSPLADLICMLLSNLSRDDDEVAALLTNLTEKKDSGLMRLARAFCDKSYNAYAEFHYLAPVFANLSQ 161 (353)
T ss_pred HHHHHHHHhc-CcccchHHHHHHHHHHhccCchHHHHHHHhcccccccchHHHHHHHhCcccccccchhHHHHHHHHHhh
Confidence 6777778876 44344677799999999998776555442 23334444444332221 223456678899999
Q ss_pred ChhHHHHHHhccHHHHHH-HHhcCCCHHHH-HHHHHHHHHhhccchhhhhhcchhhhHHHhh--cChHHHHH--------
Q 006114 521 NEKLHTMLEEDGAIKALL-AMVRSGNIDVI-AQVARGLANFAKCESRAIVQGQRKGRSHLME--DSALEWLI-------- 588 (660)
Q Consensus 521 ~~~~r~~iv~~G~V~~Lv-~lL~s~~~~v~-~~Al~aLanLA~~~~~~~aq~~~e~r~~Li~--~G~v~~Lv-------- 588 (660)
.+.+|..+.....++.=. --+.+.+..++ .-.+++|.|+|+... ....++. ...+|.|+
T Consensus 162 ~~~gR~l~~~~k~~p~~kll~ft~~~s~vRr~GvagtlkN~cFd~~---------~h~~lL~e~~~lLp~iLlPlagpee 232 (353)
T KOG2973|consen 162 FEAGRKLLLEPKRFPDQKLLPFTSEDSQVRRGGVAGTLKNCCFDAK---------LHEVLLDESINLLPAILLPLAGPEE 232 (353)
T ss_pred hhhhhhHhcchhhhhHhhhhcccccchhhhccchHHHHHhhhccch---------hHHHHhcchHHHHHHHHhhcCCccc
Confidence 999999999887554322 12234344454 446788889887643 1122222 22333222
Q ss_pred -------------Hhhc-----CCCHHHHHHHHHHHHHhhcCCccHHHHHhcCcHHHHHHHHhcCChHHHHHHHHH
Q 006114 589 -------------ANSK-----TNSASTRRHVELALCHLAQNEDNARDFISRGGAKELVQISIESSREDIRNLAKK 646 (660)
Q Consensus 589 -------------~lL~-----s~d~~vr~~Aa~AL~nLa~~~e~~~~Ive~G~l~~Lv~lL~s~s~~~ir~~A~~ 646 (660)
.++. .+|+.+|..-..||..||.....+..+.+-|+.+.|-.+-.....++++.++..
T Consensus 233 ~sEEdm~~LP~eLQyLp~dKeRepdpdIrk~llEai~lLcaT~~GRe~lR~kgvYpilRElhk~e~ded~~~ace~ 308 (353)
T KOG2973|consen 233 LSEEDMAKLPVELQYLPEDKEREPDPDIRKMLLEALLLLCATRAGREVLRSKGVYPILRELHKWEEDEDIREACEQ 308 (353)
T ss_pred cCHHHHhcCCHhhhcCCccccCCCChHHHHHHHHHHHHHHhhhHhHHHHHhcCchHHHHHHhcCCCcHHHHHHHHH
Confidence 2332 147899999999999999999898888888887666666665677777777663
No 66
>PF00038 Filament: Intermediate filament protein; InterPro: IPR016044 Intermediate filaments (IF) [, , ] are proteins which are primordial components of the cytoskeleton and the nuclear envelope. They generally form filamentous structures 8 to 14 nm wide. IF proteins are members of a very large multigene family of proteins which has been subdivided in five major subgroups: Type I: Acidic cytokeratins. Type II: Basic cytokeratins. Type III: Vimentin, desmin, glial fibrillary acidic protein (GFAP), peripherin, and plasticin. Type IV: Neurofilaments L, H and M, alpha-internexin and nestin. Type V: Nuclear lamins A, B1, B2 and C. All IF proteins are structurally similar in that they consist of: a central rod domain comprising some 300 to 350 residues which is arranged in coiled-coiled alpha-helices, with at least two short characteristic interruptions; a N-terminal non-helical domain (head) of variable length; and a C-terminal domain (tail) which is also non-helical, and which shows extreme length variation between different IF proteins. While IF proteins are evolutionary and structurally related, they have limited sequence homologies except in several regions of the rod domain. This entry represents the central rod domain found in IF proteins.; PDB: 3TNU_B 3KLT_D 1GK4_F 3TRT_A 3G1E_A 3UF1_C 1GK6_B 1GK7_A 3TYY_B 3V4W_A ....
Probab=97.94 E-value=0.037 Score=59.04 Aligned_cols=73 Identities=22% Similarity=0.367 Sum_probs=41.2
Q ss_pred HhhHHHHHHHHHHHHHHHHHHhhhhchHHHHHHHHHHHhhhhhhHHHHhhhhhHHHHHHhhHHHHHHHHHHHH
Q 006114 173 DTTQMYEKKITELIKQLEIEHARSEGAEEQVDTMKKLISDNQKSIEQYEMENSTYQKALADTTQLYEKKIAEL 245 (660)
Q Consensus 173 ~~~~~~~~~~~~l~~~l~~e~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~ 245 (660)
+.-..|..++.++.............+.+++..++..+..++..+...+..|.++...+.++.+.|......+
T Consensus 188 e~e~~y~~k~~~l~~~~~~~~~~~~~~~~E~~~~r~~~~~l~~el~~l~~~~~~Le~~l~~le~~~~~~~~~~ 260 (312)
T PF00038_consen 188 ELEEWYQSKLEELRQQSEKSSEELESAKEELKELRRQIQSLQAELESLRAKNASLERQLRELEQRLDEEREEY 260 (312)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhhhhcccccccccccccccccccchhHhHHHHHHhhhhHhhhhhhccccchhhhhhhHHHHHHHHHHHHHHH
Confidence 3334455556666665555555555666666666666666665555555555555555555555554444433
No 67
>KOG0240 consensus Kinesin (SMY1 subfamily) [Cytoskeleton]
Probab=97.92 E-value=0.0013 Score=73.70 Aligned_cols=198 Identities=18% Similarity=0.124 Sum_probs=146.6
Q ss_pred HHhhHHHHHhhHHHHHHHHHHHHHHHHHhhhhch--HHHHHHHHHHHhhHHHHHHhhhhhhhHHHHhhhhHHHHHHHHHh
Q 006114 54 CQISYDEAKDNLVTQVELLTAKIEMQQKLRENDK--YEFEKQLRESQISYDESMRNLVTRSEFLEKENAHLELEVEKILG 131 (660)
Q Consensus 54 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 131 (660)
.++++++.+++++++.|++++.++..+++++..+ ++.|.-...++.++.+..+...-. ..
T Consensus 339 ~e~~~e~~~r~~e~~kd~~~~~~~~~~~~~~sl~~~~~~E~~~~de~~~~~~~~k~~~~~-----------~~------- 400 (607)
T KOG0240|consen 339 LELTAEEWKRKLEKKKDKNVALKEELEKLRNSLKRWRNGEEVKEDEDFSLKEEAKMSAIL-----------SE------- 400 (607)
T ss_pred hHhhHHHHHHHHHHHHhHHHHHHHHHHHHHHHHhhhcccCcccchhhhhHHHHHHhhhhh-----------hh-------
Confidence 5678999999999999999999999999988776 556666777777777773222211 00
Q ss_pred hhhhhhhhhhhHHHHHHHHHHHhhhhhhhhhhhhhhHHHHHHhhHHHHHHHHHHHHHHHHHHhhhhchHHHHHHHHHHHh
Q 006114 132 ELNHQKDQNNLKREKIVQLEISLKNSKQQQLDNSSYQKVLADTTQMYEKKITELIKQLEIEHARSEGAEEQVDTMKKLIS 211 (660)
Q Consensus 132 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~e~~~~~~~~~~~~~l~~~l~ 211 (660)
.++. .+.+.-..++.+..+++....|..+....+..-+...+|...|.
T Consensus 401 ------------------~~~~--------------i~~~~~~~~~~~~~~~e~~~~L~qqlD~kd~~~n~~sqL~~~lk 448 (607)
T KOG0240|consen 401 ------------------EEMS--------------ITKLKGSLEEEEDILTERIESLYQQLDQKDDQINKQSQLMEKLK 448 (607)
T ss_pred ------------------hhhh--------------hhhcccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 0000 00001002344555555555565555666666677777766666
Q ss_pred hhhhhHHHHhhhhhHHHHHHhhHHHHHHHHHHHHhhhhhhhhhhhhhhHHhHHHHHHHhhhhhccccc---hhHHHHHHH
Q 006114 212 DNQKSIEQYEMENSTYQKALADTTQLYEKKIAELNKKLEDEHACFEGAVEQLDMVKKLLSDYQNSNQG---QKEVHELCV 288 (660)
Q Consensus 212 ~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~e~~~Lk~ 288 (660)
.-. ..+.++.++.+.+.++.|.|+..|.+++.-.+||..+.-.|.++|.++....|..+.++-. ..++..++.
T Consensus 449 ~q~----~~qee~~s~~~~~~e~~q~e~~~~Q~~~e~~~~e~~e~~~al~el~~~~~~~~~~~~~~~~~n~~sel~sl~~ 524 (607)
T KOG0240|consen 449 EQL----LDQEELLSSTRRLYEDIQQELSEIQEENEAAKDEVKEVLTALEELAVNYDQKSEEKESKLSQNLKSELQSLQE 524 (607)
T ss_pred HHH----HHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHhhhhhhhhHHHHHhhhh
Confidence 555 6778999999999999999999999999999999999999999999999999999887665 668888888
Q ss_pred HHHHHHHHHHhHHHHHH
Q 006114 289 KLKETRQLHESAVYEVQ 305 (660)
Q Consensus 289 ~Le~e~~~~e~~e~E~~ 305 (660)
..+........+..++.
T Consensus 525 ~~~~~~~r~~~~~~~l~ 541 (607)
T KOG0240|consen 525 PSEHQSKRITELLSELR 541 (607)
T ss_pred cccchhHHHHHHHHHHH
Confidence 88888777777764444
No 68
>COG1413 FOG: HEAT repeat [Energy production and conversion]
Probab=97.90 E-value=0.00074 Score=72.50 Aligned_cols=157 Identities=24% Similarity=0.298 Sum_probs=113.3
Q ss_pred CCHHHHHHhhCCCCHHHHHHHHHHHHHhhCCchhHHHHHHcCCHHHHHHHHccCCCHHHHHHHHHHHHHhhcCchhHHHH
Q 006114 407 VGLPKILQLLTSEDPDVQIHAVKVVANLAAEDINQEKIVEEGGLDALLLLLRTSQNTTILRVASGAIANLAMNEMNQGLI 486 (660)
Q Consensus 407 ggI~~LV~LL~s~d~~vr~~Aa~aL~nLa~~~en~~~Ive~GgI~~Lv~LL~~s~d~~v~~~Aa~AL~nLA~~~~n~~~I 486 (660)
..++.++.++.+++..++..|+..++.+.. .-++|.|..+|. +.++.++..|+.+|+.+-. +
T Consensus 43 ~~~~~~~~~l~~~~~~vr~~aa~~l~~~~~----------~~av~~l~~~l~-d~~~~vr~~a~~aLg~~~~-~------ 104 (335)
T COG1413 43 EAADELLKLLEDEDLLVRLSAAVALGELGS----------EEAVPLLRELLS-DEDPRVRDAAADALGELGD-P------ 104 (335)
T ss_pred hhHHHHHHHHcCCCHHHHHHHHHHHhhhch----------HHHHHHHHHHhc-CCCHHHHHHHHHHHHccCC-h------
Confidence 467888888888889999998888754433 236889999997 7788899999988887621 2
Q ss_pred HhcCccHHHHHhhcCCCCHHHHHHHHHHHHHHhcChhHHHHHHhccHHHHHHHHhcCCCH------------HHHHHHHH
Q 006114 487 MSRGGGQLLAKTASKTDDPQTLRMVAGALANLCGNEKLHTMLEEDGAIKALLAMVRSGNI------------DVIAQVAR 554 (660)
Q Consensus 487 ve~g~I~~Ll~LL~~s~d~~v~~~Aa~aLanLa~~~~~r~~iv~~G~V~~Lv~lL~s~~~------------~v~~~Al~ 554 (660)
..++.|+.++...++..|+..|+++|..+-. ..++..++.++..... .++..++.
T Consensus 105 ---~a~~~li~~l~~d~~~~vR~~aa~aL~~~~~----------~~a~~~l~~~l~~~~~~~a~~~~~~~~~~~r~~a~~ 171 (335)
T COG1413 105 ---EAVPPLVELLENDENEGVRAAAARALGKLGD----------ERALDPLLEALQDEDSGSAAAALDAALLDVRAAAAE 171 (335)
T ss_pred ---hHHHHHHHHHHcCCcHhHHHHHHHHHHhcCc----------hhhhHHHHHHhccchhhhhhhhccchHHHHHHHHHH
Confidence 2678888888755788889888888877642 2346777777766552 23444444
Q ss_pred HHHHhhccchhhhhhcchhhhHHHhhcChHHHHHHhhcCCCHHHHHHHHHHHHHhhcCC
Q 006114 555 GLANFAKCESRAIVQGQRKGRSHLMEDSALEWLIANSKTNSASTRRHVELALCHLAQNE 613 (660)
Q Consensus 555 aLanLA~~~~~~~aq~~~e~r~~Li~~G~v~~Lv~lL~s~d~~vr~~Aa~AL~nLa~~~ 613 (660)
+++.+- +...++.+...+.+.+..+|..|+.+|+.+..+.
T Consensus 172 ~l~~~~-------------------~~~~~~~l~~~l~~~~~~vr~~Aa~aL~~~~~~~ 211 (335)
T COG1413 172 ALGELG-------------------DPEAIPLLIELLEDEDADVRRAAASALGQLGSEN 211 (335)
T ss_pred HHHHcC-------------------ChhhhHHHHHHHhCchHHHHHHHHHHHHHhhcch
Confidence 444333 3456778888888888888888888888887765
No 69
>TIGR02270 conserved hypothetical protein. Members are found in Myxococcus xanthus (six members), Geobacter sulfurreducens, and Pseudomonas aeruginosa; a short protein homologous to the N-terminal region is found in Mesorhizobium loti. All sequence are from Proteobacteria. The function is unknown.
Probab=97.89 E-value=0.00018 Score=79.71 Aligned_cols=155 Identities=17% Similarity=0.114 Sum_probs=119.1
Q ss_pred hCCCHHHHHHhhC-CCCHHHHHHHHHHHHHhhCCchhHHHHHHcCCHHHHHHHHccCCCHHHHHHHHHHHHHhhcCchhH
Q 006114 405 DEVGLPKILQLLT-SEDPDVQIHAVKVVANLAAEDINQEKIVEEGGLDALLLLLRTSQNTTILRVASGAIANLAMNEMNQ 483 (660)
Q Consensus 405 e~ggI~~LV~LL~-s~d~~vr~~Aa~aL~nLa~~~en~~~Ive~GgI~~Lv~LL~~s~d~~v~~~Aa~AL~nLA~~~~n~ 483 (660)
+..+++.|+..|. .++..++..++.++. .... ..++..|+..|. +.++.++..++.+|+-+
T Consensus 52 G~~a~~~L~~aL~~d~~~ev~~~aa~al~--~~~~--------~~~~~~L~~~L~-d~~~~vr~aaa~ALg~i------- 113 (410)
T TIGR02270 52 GKAATELLVSALAEADEPGRVACAALALL--AQED--------ALDLRSVLAVLQ-AGPEGLCAGIQAALGWL------- 113 (410)
T ss_pred hHhHHHHHHHHHhhCCChhHHHHHHHHHh--ccCC--------hHHHHHHHHHhc-CCCHHHHHHHHHHHhcC-------
Confidence 3567899998884 677888776665552 2221 113899999997 77888999999999854
Q ss_pred HHHHhcCccHHHHHhhcCCCCHHHHHHHHHHHHHHhcChhHHHHHHhccHHHHHHHHhcCCCHHHHHHHHHHHHHhhccc
Q 006114 484 GLIMSRGGGQLLAKTASKTDDPQTLRMVAGALANLCGNEKLHTMLEEDGAIKALLAMVRSGNIDVIAQVARGLANFAKCE 563 (660)
Q Consensus 484 ~~Ive~g~I~~Ll~LL~~s~d~~v~~~Aa~aLanLa~~~~~r~~iv~~G~V~~Lv~lL~s~~~~v~~~Al~aLanLA~~~ 563 (660)
...+..+.|+.+|.+ .+|.++..++.++.. ......+.+..++.+.++.|+..|+.+|+.+...
T Consensus 114 ---~~~~a~~~L~~~L~~-~~p~vR~aal~al~~-----------r~~~~~~~L~~~L~d~d~~Vra~A~raLG~l~~~- 177 (410)
T TIGR02270 114 ---GGRQAEPWLEPLLAA-SEPPGRAIGLAALGA-----------HRHDPGPALEAALTHEDALVRAAALRALGELPRR- 177 (410)
T ss_pred ---CchHHHHHHHHHhcC-CChHHHHHHHHHHHh-----------hccChHHHHHHHhcCCCHHHHHHHHHHHHhhccc-
Confidence 223467889999964 789999888877755 2234567899999999999999999999988742
Q ss_pred hhhhhhcchhhhHHHhhcChHHHHHHhhcCCCHHHHHHHHHHHHHhhc
Q 006114 564 SRAIVQGQRKGRSHLMEDSALEWLIANSKTNSASTRRHVELALCHLAQ 611 (660)
Q Consensus 564 ~~~~aq~~~e~r~~Li~~G~v~~Lv~lL~s~d~~vr~~Aa~AL~nLa~ 611 (660)
.+++.|...+.+.++.||..|+++|..+..
T Consensus 178 ------------------~a~~~L~~al~d~~~~VR~aA~~al~~lG~ 207 (410)
T TIGR02270 178 ------------------LSESTLRLYLRDSDPEVRFAALEAGLLAGS 207 (410)
T ss_pred ------------------cchHHHHHHHcCCCHHHHHHHHHHHHHcCC
Confidence 467778888999999999999999987754
No 70
>COG1196 Smc Chromosome segregation ATPases [Cell division and chromosome partitioning]
Probab=97.88 E-value=0.06 Score=67.71 Aligned_cols=151 Identities=19% Similarity=0.202 Sum_probs=69.7
Q ss_pred hhhhhHHHHhhhhHHHHHHHHHhhhhhhhhhhhhHHHHHHHHHHHhhhhhhhhhhhhhhHHHHHHhhHHHHHHHHHHHHH
Q 006114 109 VTRSEFLEKENAHLELEVEKILGELNHQKDQNNLKREKIVQLEISLKNSKQQQLDNSSYQKVLADTTQMYEKKITELIKQ 188 (660)
Q Consensus 109 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~ 188 (660)
..+....+++...+..++.++...+............++..+|..+.....+.-...........+...+..+|......
T Consensus 259 ~~~~~~~~~~i~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~le~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 338 (1163)
T COG1196 259 QEELEEAEKEIEELKSELEELREELEELQEELLELKEEIEELEGEISLLRERLEELENELEELEERLEELKEKIEALKEE 338 (1163)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33333444444555555555555444443333333335556666666555555555555555555555555555555555
Q ss_pred HHHHHhhhhchHHHHHHHHHHHhhhhhhHHHHhhhhhHHHHHHhhHHHHHHHHHHHHhhhhhhhhhhhhhhHHhHHHH
Q 006114 189 LEIEHARSEGAEEQVDTMKKLISDNQKSIEQYEMENSTYQKALADTTQLYEKKIAELNKKLEDEHACFEGAVEQLDMV 266 (660)
Q Consensus 189 l~~e~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 266 (660)
++........+......+.....+.+ ...+...+.+..+...+..+++++..++++-....+.+..+++.+
T Consensus 339 ~~~~~~~~~e~~~~~~~~~~~~~e~~-------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~i~~l 409 (1163)
T COG1196 339 LEERETLLEELEQLLAELEEAKEELE-------EKLSALLEELEELFEALREELAELEAELAEIRNELEELKREIESL 409 (1163)
T ss_pred HHHHHhHHHHHHHHHHHHHHHHHHHH-------HHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 55443222222222232322222222 333333333444445555555555555554444444444444433
No 71
>PF13646 HEAT_2: HEAT repeats; PDB: 1OYZ_A 3FGA_A 2PF4_C 2IAE_A 3B2A_A.
Probab=97.85 E-value=4.9e-05 Score=64.93 Aligned_cols=87 Identities=28% Similarity=0.433 Sum_probs=71.1
Q ss_pred HHHHHHhh-CCCCHHHHHHHHHHHHHhhCCchhHHHHHHcCCHHHHHHHHccCCCHHHHHHHHHHHHHhhcCchhHHHHH
Q 006114 409 LPKILQLL-TSEDPDVQIHAVKVVANLAAEDINQEKIVEEGGLDALLLLLRTSQNTTILRVASGAIANLAMNEMNQGLIM 487 (660)
Q Consensus 409 I~~LV~LL-~s~d~~vr~~Aa~aL~nLa~~~en~~~Ive~GgI~~Lv~LL~~s~d~~v~~~Aa~AL~nLA~~~~n~~~Iv 487 (660)
||.|+..| .++++.+|..|+.+|+.+. ....+|.|+.++. ++++.|+..|+.+|+.+-
T Consensus 1 i~~L~~~l~~~~~~~vr~~a~~~L~~~~----------~~~~~~~L~~~l~-d~~~~vr~~a~~aL~~i~---------- 59 (88)
T PF13646_consen 1 IPALLQLLQNDPDPQVRAEAARALGELG----------DPEAIPALIELLK-DEDPMVRRAAARALGRIG---------- 59 (88)
T ss_dssp HHHHHHHHHTSSSHHHHHHHHHHHHCCT----------HHHHHHHHHHHHT-SSSHHHHHHHHHHHHCCH----------
T ss_pred CHHHHHHHhcCCCHHHHHHHHHHHHHcC----------CHhHHHHHHHHHc-CCCHHHHHHHHHHHHHhC----------
Confidence 68899888 8899999999999998442 2235999999996 899999999999999872
Q ss_pred hcCccHHHHHhhcCCCCHHHHHHHHHHHH
Q 006114 488 SRGGGQLLAKTASKTDDPQTLRMVAGALA 516 (660)
Q Consensus 488 e~g~I~~Ll~LL~~s~d~~v~~~Aa~aLa 516 (660)
...+++.|..++.++++..++..|+.+|+
T Consensus 60 ~~~~~~~L~~~l~~~~~~~vr~~a~~aL~ 88 (88)
T PF13646_consen 60 DPEAIPALIKLLQDDDDEVVREAAAEALG 88 (88)
T ss_dssp HHHTHHHHHHHHTC-SSHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHcCCCcHHHHHHHHhhcC
Confidence 34488999999987777777888888874
No 72
>PF00038 Filament: Intermediate filament protein; InterPro: IPR016044 Intermediate filaments (IF) [, , ] are proteins which are primordial components of the cytoskeleton and the nuclear envelope. They generally form filamentous structures 8 to 14 nm wide. IF proteins are members of a very large multigene family of proteins which has been subdivided in five major subgroups: Type I: Acidic cytokeratins. Type II: Basic cytokeratins. Type III: Vimentin, desmin, glial fibrillary acidic protein (GFAP), peripherin, and plasticin. Type IV: Neurofilaments L, H and M, alpha-internexin and nestin. Type V: Nuclear lamins A, B1, B2 and C. All IF proteins are structurally similar in that they consist of: a central rod domain comprising some 300 to 350 residues which is arranged in coiled-coiled alpha-helices, with at least two short characteristic interruptions; a N-terminal non-helical domain (head) of variable length; and a C-terminal domain (tail) which is also non-helical, and which shows extreme length variation between different IF proteins. While IF proteins are evolutionary and structurally related, they have limited sequence homologies except in several regions of the rod domain. This entry represents the central rod domain found in IF proteins.; PDB: 3TNU_B 3KLT_D 1GK4_F 3TRT_A 3G1E_A 3UF1_C 1GK6_B 1GK7_A 3TYY_B 3V4W_A ....
Probab=97.84 E-value=0.019 Score=61.23 Aligned_cols=133 Identities=22% Similarity=0.271 Sum_probs=68.9
Q ss_pred hhHHHHhhhhHHHHHHHHHhhhhhhhhhhhhHHHHHHHHHHHhhhhhhhhhhhhhhHHHHHHhhHHHHHHHHHHHHHHHH
Q 006114 112 SEFLEKENAHLELEVEKILGELNHQKDQNNLKREKIVQLEISLKNSKQQQLDNSSYQKVLADTTQMYEKKITELIKQLEI 191 (660)
Q Consensus 112 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~ 191 (660)
.-||+.+|..|+.++..+........+ .-....+-+++...+.=-+......-+.-.+..+..++.+++..++.
T Consensus 20 Vr~LE~~N~~Le~~i~~~~~~~~~~~~------~~~~~ye~el~~lr~~id~~~~eka~l~~e~~~l~~e~~~~r~k~e~ 93 (312)
T PF00038_consen 20 VRFLEQENKRLESEIEELREKKGEEVS------RIKEMYEEELRELRRQIDDLSKEKARLELEIDNLKEELEDLRRKYEE 93 (312)
T ss_dssp HHHHHHHHHHHHHHHHH---------H------HHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHhhhhHHHHHHHHhcccccCc------ccccchhhHHHHhHHhhhhHHHHhhHHhhhhhhHHHHHHHHHHHHHH
Confidence 347788888888888887776422221 11112222233222222222222234444555556666666666666
Q ss_pred HHhhhhchHHHHHHHHHHHhhhhhhHHHHhhhhhHHHHHHhhHHHHHHHHHHHHhhhhh
Q 006114 192 EHARSEGAEEQVDTMKKLISDNQKSIEQYEMENSTYQKALADTTQLYEKKIAELNKKLE 250 (660)
Q Consensus 192 e~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~ 250 (660)
+...+..++.++..|++.+.+.--.....+..-.++++.|+-....|+..|.+|..++.
T Consensus 94 e~~~~~~le~el~~lrk~ld~~~~~r~~le~~i~~L~eEl~fl~~~heeEi~~L~~~~~ 152 (312)
T PF00038_consen 94 ELAERKDLEEELESLRKDLDEETLARVDLENQIQSLKEELEFLKQNHEEEIEELREQIQ 152 (312)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTSTT--
T ss_pred HHHHHHHHHHHHhhhhhhhhhhhhhHhHHHHHHHHHHHHHHHHHhhhhhhhhhhhhccc
Confidence 66666666666666666666555444444445556666666666667777777766663
No 73
>PF00514 Arm: Armadillo/beta-catenin-like repeat; InterPro: IPR000225 The armadillo (Arm) repeat is an approximately 40 amino acid long tandemly repeated sequence motif first identified in the Drosophila melanogaster segment polarity gene armadillo involved in signal transduction through wingless. Animal Arm-repeat proteins function in various processes, including intracellular signalling and cytoskeletal regulation, and include such proteins as beta-catenin, the junctional plaque protein plakoglobin, the adenomatous polyposis coli (APC) tumour suppressor protein, and the nuclear transport factor importin-alpha, amongst others []. A subset of these proteins is conserved across eukaryotic kingdoms. In higher plants, some Arm-repeat proteins function in intracellular signalling like their mammalian counterparts, while others have novel functions []. The 3-dimensional fold of an armadillo repeat is known from the crystal structure of beta-catenin, where the 12 repeats form a superhelix of alpha helices with three helices per unit []. The cylindrical structure features a positively charged grove, which presumably interacts with the acidic surfaces of the known interaction partners of beta-catenin.; GO: 0005515 protein binding; PDB: 2Z6G_A 1IQ1_C 3RZX_A 2C1M_A 3BTR_C 3OQS_A 3TPO_A 1IAL_A 1Q1S_C 1PJM_B ....
Probab=97.81 E-value=2.7e-05 Score=57.76 Aligned_cols=41 Identities=37% Similarity=0.519 Sum_probs=37.9
Q ss_pred CchhHHHHHHcCCHHHHHHHHccCCCHHHHHHHHHHHHHhhc
Q 006114 437 EDINQEKIVEEGGLDALLLLLRTSQNTTILRVASGAIANLAM 478 (660)
Q Consensus 437 ~~en~~~Ive~GgI~~Lv~LL~~s~d~~v~~~Aa~AL~nLA~ 478 (660)
+++++..|++.||||+|+.+|. ++++.++..|+++|+||+.
T Consensus 1 ~~~~~~~i~~~g~i~~Lv~ll~-~~~~~v~~~a~~al~nl~~ 41 (41)
T PF00514_consen 1 SPENKQAIVEAGGIPPLVQLLK-SPDPEVQEEAAWALGNLAA 41 (41)
T ss_dssp SHHHHHHHHHTTHHHHHHHHTT-SSSHHHHHHHHHHHHHHHT
T ss_pred CHHHHHHHHHcccHHHHHHHHc-CCCHHHHHHHHHHHHHHhC
Confidence 4678999999999999999998 8899999999999999973
No 74
>KOG2171 consensus Karyopherin (importin) beta 3 [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=97.79 E-value=0.0011 Score=79.33 Aligned_cols=208 Identities=19% Similarity=0.143 Sum_probs=138.3
Q ss_pred HHHHHHHHHHHhhCCchhHHHHHHcCCHHHHHHHHccCCCHHHHHHHHHHHHHhhcC-chhHHHHHhcCccHHHHHhhcC
Q 006114 423 VQIHAVKVVANLAAEDINQEKIVEEGGLDALLLLLRTSQNTTILRVASGAIANLAMN-EMNQGLIMSRGGGQLLAKTASK 501 (660)
Q Consensus 423 vr~~Aa~aL~nLa~~~en~~~Ive~GgI~~Lv~LL~~s~d~~v~~~Aa~AL~nLA~~-~~n~~~Ive~g~I~~Ll~LL~~ 501 (660)
--..|..+|--+|.+-.... +-.-.++.+-.+|. +++..-|..+..||+.++.+ .+...... ..+++.+++.|.+
T Consensus 325 ~~~~A~~~lDrlA~~L~g~~--v~p~~~~~l~~~l~-S~~w~~R~AaL~Als~i~EGc~~~m~~~l-~~Il~~Vl~~l~D 400 (1075)
T KOG2171|consen 325 PYRAAEQALDRLALHLGGKQ--VLPPLFEALEAMLQ-STEWKERHAALLALSVIAEGCSDVMIGNL-PKILPIVLNGLND 400 (1075)
T ss_pred cHHHHHHHHHHHHhcCChhh--ehHHHHHHHHHHhc-CCCHHHHHHHHHHHHHHHcccHHHHHHHH-HHHHHHHHhhcCC
Confidence 34566667766655321111 00112344445555 78888888999999999876 33333222 3477888888875
Q ss_pred CCCHHHHHHHHHHHHHHhc--ChhHHHHHHhccHHHHHHHHhcC-CCHHHHHHHHHHHHHhhccchhhhhhcchhhhHHH
Q 006114 502 TDDPQTLRMVAGALANLCG--NEKLHTMLEEDGAIKALLAMVRS-GNIDVIAQVARGLANFAKCESRAIVQGQRKGRSHL 578 (660)
Q Consensus 502 s~d~~v~~~Aa~aLanLa~--~~~~r~~iv~~G~V~~Lv~lL~s-~~~~v~~~Al~aLanLA~~~~~~~aq~~~e~r~~L 578 (660)
++|.|+..|+-||..++. -|..... ...-.+|.|+..+.+ .++.|+.+|+.++-|+....+- ..+
T Consensus 401 -phprVr~AA~naigQ~stdl~p~iqk~-~~e~l~~aL~~~ld~~~~~rV~ahAa~al~nf~E~~~~----------~~l 468 (1075)
T KOG2171|consen 401 -PHPRVRYAALNAIGQMSTDLQPEIQKK-HHERLPPALIALLDSTQNVRVQAHAAAALVNFSEECDK----------SIL 468 (1075)
T ss_pred -CCHHHHHHHHHHHHhhhhhhcHHHHHH-HHHhccHHHHHHhcccCchHHHHHHHHHHHHHHHhCcH----------HHH
Confidence 899999999999999983 3444333 334577788888875 5789999999999998754331 111
Q ss_pred hh--cChHH-HHHHhhcCCCHHHHHHHHHHHHHhhcCCcc--HHHHHhcCcHHHHHHHHhcCChHHHHHHHHHHH
Q 006114 579 ME--DSALE-WLIANSKTNSASTRRHVELALCHLAQNEDN--ARDFISRGGAKELVQISIESSREDIRNLAKKTM 648 (660)
Q Consensus 579 i~--~G~v~-~Lv~lL~s~d~~vr~~Aa~AL~nLa~~~e~--~~~Ive~G~l~~Lv~lL~s~s~~~ir~~A~~~L 648 (660)
.. .+.+. .+..++.++.+.++..|+.|++..+..... .... .-.+|.|..++...+.++.|....+++
T Consensus 469 ~pYLd~lm~~~l~~L~~~~~~~v~e~vvtaIasvA~AA~~~F~pY~--d~~Mp~L~~~L~n~~~~d~r~Lrgktm 541 (1075)
T KOG2171|consen 469 EPYLDGLMEKKLLLLLQSSKPYVQEQAVTAIASVADAAQEKFIPYF--DRLMPLLKNFLQNADDKDLRELRGKTM 541 (1075)
T ss_pred HHHHHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHHHHhhhhHhHH--HHHHHHHHHHHhCCCchhhHHHHhhHH
Confidence 11 34444 334456777899999999999998764422 2222 236799999999888787777776655
No 75
>PTZ00429 beta-adaptin; Provisional
Probab=97.76 E-value=0.0018 Score=76.90 Aligned_cols=175 Identities=12% Similarity=0.073 Sum_probs=124.8
Q ss_pred CHHHHHHhhCCCCHHHHHHHHHHHHHhhC-CchhHHHHHHcCCHHHHHHHHccCCCHHHHHHHHHHHHHhhcCchhHHHH
Q 006114 408 GLPKILQLLTSEDPDVQIHAVKVVANLAA-EDINQEKIVEEGGLDALLLLLRTSQNTTILRVASGAIANLAMNEMNQGLI 486 (660)
Q Consensus 408 gI~~LV~LL~s~d~~vr~~Aa~aL~nLa~-~~en~~~Ive~GgI~~Lv~LL~~s~d~~v~~~Aa~AL~nLA~~~~n~~~I 486 (660)
+.+.++.++.+++..++.-..-.|.+++. +++..-. ++..|..=+. ++||.+|..|.++|++|-. +....
T Consensus 69 LF~dVvk~~~S~d~elKKLvYLYL~~ya~~~pelalL-----aINtl~KDl~-d~Np~IRaLALRtLs~Ir~-~~i~e-- 139 (746)
T PTZ00429 69 LFVDVVKLAPSTDLELKKLVYLYVLSTARLQPEKALL-----AVNTFLQDTT-NSSPVVRALAVRTMMCIRV-SSVLE-- 139 (746)
T ss_pred HHHHHHHHhCCCCHHHHHHHHHHHHHHcccChHHHHH-----HHHHHHHHcC-CCCHHHHHHHHHHHHcCCc-HHHHH--
Confidence 46777888899999999999989988887 5543211 3566666666 7899999999999988733 22111
Q ss_pred HhcCccHHHHHhhcCCCCHHHHHHHHHHHHHHhc-ChhHHHHHHhccHHHHHHHHhcCCCHHHHHHHHHHHHHhhccchh
Q 006114 487 MSRGGGQLLAKTASKTDDPQTLRMVAGALANLCG-NEKLHTMLEEDGAIKALLAMVRSGNIDVIAQVARGLANFAKCESR 565 (660)
Q Consensus 487 ve~g~I~~Ll~LL~~s~d~~v~~~Aa~aLanLa~-~~~~r~~iv~~G~V~~Lv~lL~s~~~~v~~~Al~aLanLA~~~~~ 565 (660)
-.++++...+.+ .+|-|++.|+.|+..+-. +|+ .+...|.++.|..++...++.|..+|+.+|..++..++.
T Consensus 140 ---~l~~~lkk~L~D-~~pYVRKtAalai~Kly~~~pe---lv~~~~~~~~L~~LL~D~dp~Vv~nAl~aL~eI~~~~~~ 212 (746)
T PTZ00429 140 ---YTLEPLRRAVAD-PDPYVRKTAAMGLGKLFHDDMQ---LFYQQDFKKDLVELLNDNNPVVASNAAAIVCEVNDYGSE 212 (746)
T ss_pred ---HHHHHHHHHhcC-CCHHHHHHHHHHHHHHHhhCcc---cccccchHHHHHHHhcCCCccHHHHHHHHHHHHHHhCch
Confidence 245667777765 889999999999999863 442 344668889999999999999999999999999865432
Q ss_pred hhhhcchhhhHHHhhcChHHHHHHhhcCCCHHHHHHHHHHHHH
Q 006114 566 AIVQGQRKGRSHLMEDSALEWLIANSKTNSASTRRHVELALCH 608 (660)
Q Consensus 566 ~~aq~~~e~r~~Li~~G~v~~Lv~lL~s~d~~vr~~Aa~AL~n 608 (660)
. .-...+.+..|+..+...+++.+.....+|+.
T Consensus 213 ~----------l~l~~~~~~~Ll~~L~e~~EW~Qi~IL~lL~~ 245 (746)
T PTZ00429 213 K----------IESSNEWVNRLVYHLPECNEWGQLYILELLAA 245 (746)
T ss_pred h----------hHHHHHHHHHHHHHhhcCChHHHHHHHHHHHh
Confidence 1 11234445556666666666666655555544
No 76
>PF00514 Arm: Armadillo/beta-catenin-like repeat; InterPro: IPR000225 The armadillo (Arm) repeat is an approximately 40 amino acid long tandemly repeated sequence motif first identified in the Drosophila melanogaster segment polarity gene armadillo involved in signal transduction through wingless. Animal Arm-repeat proteins function in various processes, including intracellular signalling and cytoskeletal regulation, and include such proteins as beta-catenin, the junctional plaque protein plakoglobin, the adenomatous polyposis coli (APC) tumour suppressor protein, and the nuclear transport factor importin-alpha, amongst others []. A subset of these proteins is conserved across eukaryotic kingdoms. In higher plants, some Arm-repeat proteins function in intracellular signalling like their mammalian counterparts, while others have novel functions []. The 3-dimensional fold of an armadillo repeat is known from the crystal structure of beta-catenin, where the 12 repeats form a superhelix of alpha helices with three helices per unit []. The cylindrical structure features a positively charged grove, which presumably interacts with the acidic surfaces of the known interaction partners of beta-catenin.; GO: 0005515 protein binding; PDB: 2Z6G_A 1IQ1_C 3RZX_A 2C1M_A 3BTR_C 3OQS_A 3TPO_A 1IAL_A 1Q1S_C 1PJM_B ....
Probab=97.75 E-value=6.7e-05 Score=55.66 Aligned_cols=41 Identities=24% Similarity=0.377 Sum_probs=38.6
Q ss_pred ChhHHHHHHhccHHHHHHHHhcCCCHHHHHHHHHHHHHhhc
Q 006114 521 NEKLHTMLEEDGAIKALLAMVRSGNIDVIAQVARGLANFAK 561 (660)
Q Consensus 521 ~~~~r~~iv~~G~V~~Lv~lL~s~~~~v~~~Al~aLanLA~ 561 (660)
+++++..+++.|++|.|+.+|.++++.++..|+++|+|||.
T Consensus 1 ~~~~~~~i~~~g~i~~Lv~ll~~~~~~v~~~a~~al~nl~~ 41 (41)
T PF00514_consen 1 SPENKQAIVEAGGIPPLVQLLKSPDPEVQEEAAWALGNLAA 41 (41)
T ss_dssp SHHHHHHHHHTTHHHHHHHHTTSSSHHHHHHHHHHHHHHHT
T ss_pred CHHHHHHHHHcccHHHHHHHHcCCCHHHHHHHHHHHHHHhC
Confidence 47889999999999999999999999999999999999983
No 77
>COG1413 FOG: HEAT repeat [Energy production and conversion]
Probab=97.74 E-value=0.0013 Score=70.66 Aligned_cols=191 Identities=21% Similarity=0.258 Sum_probs=136.6
Q ss_pred chhhhhhcccCCCccccccchhhhhhcCchhHHHHHhCCCHHHHHHhhCCCCHHHHHHHHHHHHHhhCCchhHHHHHHcC
Q 006114 369 DYISKGSSRFGAPMSLQKSNPSRELSGQRATIAKICDEVGLPKILQLLTSEDPDVQIHAVKVVANLAAEDINQEKIVEEG 448 (660)
Q Consensus 369 g~i~~l~~~L~~~~~~vr~~~~~~laa~~~~~~~I~e~ggI~~LV~LL~s~d~~vr~~Aa~aL~nLa~~~en~~~Ive~G 448 (660)
..+..++..+++....+|..+...++. +-..-.+|.+..++.+.+..+|..|+.+|+.+-. ..
T Consensus 43 ~~~~~~~~~l~~~~~~vr~~aa~~l~~-------~~~~~av~~l~~~l~d~~~~vr~~a~~aLg~~~~----------~~ 105 (335)
T COG1413 43 EAADELLKLLEDEDLLVRLSAAVALGE-------LGSEEAVPLLRELLSDEDPRVRDAAADALGELGD----------PE 105 (335)
T ss_pred hhHHHHHHHHcCCCHHHHHHHHHHHhh-------hchHHHHHHHHHHhcCCCHHHHHHHHHHHHccCC----------hh
Confidence 356667777777766666655444222 2223568999999999999999999998865543 23
Q ss_pred CHHHHHHHHccCCCHHHHHHHHHHHHHhhcCchhHHHHHhcCccHHHHHhhcCCCC---------H--HHHHHHHHHHHH
Q 006114 449 GLDALLLLLRTSQNTTILRVASGAIANLAMNEMNQGLIMSRGGGQLLAKTASKTDD---------P--QTLRMVAGALAN 517 (660)
Q Consensus 449 gI~~Lv~LL~~s~d~~v~~~Aa~AL~nLA~~~~n~~~Ive~g~I~~Ll~LL~~s~d---------~--~v~~~Aa~aLan 517 (660)
+++.|+.+|..+++..++..|+.+|+.+-. ..++..++..+.+... + .++..++.+|..
T Consensus 106 a~~~li~~l~~d~~~~vR~~aa~aL~~~~~----------~~a~~~l~~~l~~~~~~~a~~~~~~~~~~~r~~a~~~l~~ 175 (335)
T COG1413 106 AVPPLVELLENDENEGVRAAAARALGKLGD----------ERALDPLLEALQDEDSGSAAAALDAALLDVRAAAAEALGE 175 (335)
T ss_pred HHHHHHHHHHcCCcHhHHHHHHHHHHhcCc----------hhhhHHHHHHhccchhhhhhhhccchHHHHHHHHHHHHHH
Confidence 699999999867899999999999998732 2236777777754221 1 233333344433
Q ss_pred HhcChhHHHHHHhccHHHHHHHHhcCCCHHHHHHHHHHHHHhhccchhhhhhcchhhhHHHhhcChHHHHHHhhcCCCHH
Q 006114 518 LCGNEKLHTMLEEDGAIKALLAMVRSGNIDVIAQVARGLANFAKCESRAIVQGQRKGRSHLMEDSALEWLIANSKTNSAS 597 (660)
Q Consensus 518 La~~~~~r~~iv~~G~V~~Lv~lL~s~~~~v~~~Al~aLanLA~~~~~~~aq~~~e~r~~Li~~G~v~~Lv~lL~s~d~~ 597 (660)
+ ...-.++.+..++...+..++..|+.+|+.+...+ ..+++.+...+.+.+..
T Consensus 176 ~----------~~~~~~~~l~~~l~~~~~~vr~~Aa~aL~~~~~~~-----------------~~~~~~l~~~~~~~~~~ 228 (335)
T COG1413 176 L----------GDPEAIPLLIELLEDEDADVRRAAASALGQLGSEN-----------------VEAADLLVKALSDESLE 228 (335)
T ss_pred c----------CChhhhHHHHHHHhCchHHHHHHHHHHHHHhhcch-----------------hhHHHHHHHHhcCCCHH
Confidence 2 22346788999999999999999999998887531 34667888889999999
Q ss_pred HHHHHHHHHHHhhcCC
Q 006114 598 TRRHVELALCHLAQNE 613 (660)
Q Consensus 598 vr~~Aa~AL~nLa~~~ 613 (660)
+|..++.+|..+....
T Consensus 229 vr~~~~~~l~~~~~~~ 244 (335)
T COG1413 229 VRKAALLALGEIGDEE 244 (335)
T ss_pred HHHHHHHHhcccCcch
Confidence 9999999998775533
No 78
>PF13646 HEAT_2: HEAT repeats; PDB: 1OYZ_A 3FGA_A 2PF4_C 2IAE_A 3B2A_A.
Probab=97.70 E-value=0.00019 Score=61.30 Aligned_cols=86 Identities=24% Similarity=0.337 Sum_probs=72.2
Q ss_pred HHHHHHHh-cCCCHHHHHHHHHHHHHhhccchhhhhhcchhhhHHHhhcChHHHHHHhhcCCCHHHHHHHHHHHHHhhcC
Q 006114 534 IKALLAMV-RSGNIDVIAQVARGLANFAKCESRAIVQGQRKGRSHLMEDSALEWLIANSKTNSASTRRHVELALCHLAQN 612 (660)
Q Consensus 534 V~~Lv~lL-~s~~~~v~~~Al~aLanLA~~~~~~~aq~~~e~r~~Li~~G~v~~Lv~lL~s~d~~vr~~Aa~AL~nLa~~ 612 (660)
||.|+..+ .++++.++..|+.+|+.+. ...+++.|+.++.++++.||..|+++|+.+.
T Consensus 1 i~~L~~~l~~~~~~~vr~~a~~~L~~~~-------------------~~~~~~~L~~~l~d~~~~vr~~a~~aL~~i~-- 59 (88)
T PF13646_consen 1 IPALLQLLQNDPDPQVRAEAARALGELG-------------------DPEAIPALIELLKDEDPMVRRAAARALGRIG-- 59 (88)
T ss_dssp HHHHHHHHHTSSSHHHHHHHHHHHHCCT-------------------HHHHHHHHHHHHTSSSHHHHHHHHHHHHCCH--
T ss_pred CHHHHHHHhcCCCHHHHHHHHHHHHHcC-------------------CHhHHHHHHHHHcCCCHHHHHHHHHHHHHhC--
Confidence 57899988 7899999999999998654 1246899999999999999999999999873
Q ss_pred CccHHHHHhcCcHHHHHHHHhcCChHHHHHHHHHHH
Q 006114 613 EDNARDFISRGGAKELVQISIESSREDIRNLAKKTM 648 (660)
Q Consensus 613 ~e~~~~Ive~G~l~~Lv~lL~s~s~~~ir~~A~~~L 648 (660)
...+++.|+.++.+.+...++..|...|
T Consensus 60 --------~~~~~~~L~~~l~~~~~~~vr~~a~~aL 87 (88)
T PF13646_consen 60 --------DPEAIPALIKLLQDDDDEVVREAAAEAL 87 (88)
T ss_dssp --------HHHTHHHHHHHHTC-SSHHHHHHHHHHH
T ss_pred --------CHHHHHHHHHHHcCCCcHHHHHHHHhhc
Confidence 3558899999999887777888887776
No 79
>KOG0977 consensus Nuclear envelope protein lamin, intermediate filament superfamily [Cell cycle control, cell division, chromosome partitioning; Nuclear structure]
Probab=97.64 E-value=0.11 Score=59.24 Aligned_cols=262 Identities=21% Similarity=0.249 Sum_probs=152.3
Q ss_pred chHHHHHHHHHHHHHhhHHHHHH----------hh-hhhhhHHHHHHHHHHH---HhhHHHHHhhHHHHHHHHHHHHHHH
Q 006114 14 DYESLCRKLETQVDHLTAEIERK----------QK-LRENDKCELEKLLREC---QISYDEAKDNLVTQVELLTAKIEMQ 79 (660)
Q Consensus 14 ~~~~~~~~~~~~~~~~~~~~~~~----------~~-~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~ 79 (660)
||=.=-|-||.|=..|..++.-- -| .=|.+.....+-+.+. ...|+-=-.+|..+++.|..+.+-.
T Consensus 53 ~YIekVR~LEaqN~~L~~di~~lr~~~~~~ts~ik~~ye~El~~ar~~l~e~~~~ra~~e~ei~kl~~e~~elr~~~~~~ 132 (546)
T KOG0977|consen 53 VYIEKVRFLEAQNRKLEHDINLLRGVVGRETSGIKAKYEAELATARKLLDETARERAKLEIEITKLREELKELRKKLEKA 132 (546)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhccCCCcchhHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHH
Confidence 45555677777776666555422 11 3456666666666663 3334444456788888888888888
Q ss_pred HHhhhhch---HHHHHHHHHHHhhHHHH---HHhhhhhhhHHHHhhhhHHHHHHHHHhhhhhhhhhhhhHHHHHHHHHHH
Q 006114 80 QKLRENDK---YEFEKQLRESQISYDES---MRNLVTRSEFLEKENAHLELEVEKILGELNHQKDQNNLKREKIVQLEIS 153 (660)
Q Consensus 80 ~~~~~~~~---~~~e~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 153 (660)
+|.+.+.+ ++++..|...+..|.-. ++.++....-|.+||.+|..++.++++.+++..--......+++.|.
T Consensus 133 ~k~~~~~re~~~~~~~~l~~leAe~~~~krr~~~le~e~~~Lk~en~rl~~~l~~~r~~ld~Etllr~d~~n~~q~Ll-- 210 (546)
T KOG0977|consen 133 EKERRGAREKLDDYLSRLSELEAEINTLKRRIKALEDELKRLKAENSRLREELARARKQLDDETLLRVDLQNRVQTLL-- 210 (546)
T ss_pred HHHHhhhHHHHHHHhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHhHHHHHH--
Confidence 88877654 45677788777766543 22333333455555555555555555555554444444444444443
Q ss_pred hhhhhhhhhhhhhhHHHHHHhhHHHHHHHHHHHHHHHHHHhhhhchHHHHHHHHHHHhhhhhhHHHHhhhhhHHHHHHhh
Q 006114 154 LKNSKQQQLDNSSYQKVLADTTQMYEKKITELIKQLEIEHARSEGAEEQVDTMKKLISDNQKSIEQYEMENSTYQKALAD 233 (660)
Q Consensus 154 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~e~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~l~~ 233 (660)
+.++=..+.++.+|.+......-.+- ...=+.=-+.|...+.|.. +||+.-=-.+.+.+
T Consensus 211 ---------------eel~f~~~~h~~eI~e~~~~~~rd~t-~~~r~~F~~eL~~Ai~eiR---aqye~~~~~nR~di-- 269 (546)
T KOG0977|consen 211 ---------------EELAFLKRIHKQEIEEERRKARRDTT-ADNREYFKNELALAIREIR---AQYEAISRQNRKDI-- 269 (546)
T ss_pred ---------------HHHHHHHhccHHHHHHHHHHHhhccc-ccchHHHHHHHHHHHHHHH---HHHHHHHHHhHHHH--
Confidence 23444556777888888877766652 1111111234555555555 22222222222222
Q ss_pred HHHHHHHHHHHHhhhhhhhhhhhhhhHHhHHHHHHHhhhh-------hccccch-hHHHHHHHHHHHHHHHHHh
Q 006114 234 TTQLYEKKIAELNKKLEDEHACFEGAVEQLDMVKKLLSDY-------QNSNQGQ-KEVHELCVKLKETRQLHES 299 (660)
Q Consensus 234 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------~~~~~~~-~e~~~Lk~~Le~e~~~~e~ 299 (660)
-..|.+||.++.++-+--+...+-+-|.+..+...++.- +...... ..|..|+-.|.+....|+.
T Consensus 270 -E~~Y~~kI~~i~~~~~~~~~~~~~~rEEl~~~R~~i~~Lr~klselE~~n~~L~~~I~dL~~ql~e~~r~~e~ 342 (546)
T KOG0977|consen 270 -ESWYKRKIQEIRTSAERANVEQNYAREELRRIRSRISGLRAKLSELESRNSALEKRIEDLEYQLDEDQRSFEQ 342 (546)
T ss_pred -HHHHHHHHHHHHhhhccccchhHHHHHHHHHHHhcccchhhhhccccccChhHHHHHHHHHhhhhhhhhhhhh
Confidence 346999999999988888888888888887776655543 3333332 3346666666666665543
No 80
>PTZ00429 beta-adaptin; Provisional
Probab=97.63 E-value=0.0039 Score=74.02 Aligned_cols=200 Identities=13% Similarity=0.114 Sum_probs=135.2
Q ss_pred HHHHHHhhCCCCHHHHHHHHHHHHHhhCCchhHHHHHHcCCHHHHHHHHccCCCHHHHHHHHHHHHHhhcCchhHHHHHh
Q 006114 409 LPKILQLLTSEDPDVQIHAVKVVANLAAEDINQEKIVEEGGLDALLLLLRTSQNTTILRVASGAIANLAMNEMNQGLIMS 488 (660)
Q Consensus 409 I~~LV~LL~s~d~~vr~~Aa~aL~nLa~~~en~~~Ive~GgI~~Lv~LL~~s~d~~v~~~Aa~AL~nLA~~~~n~~~Ive 488 (660)
+..+..=+.++++.+|..|+++|++|.... +++. .++++..+|. +.+|-||..|+.|+..|..... ..+..
T Consensus 107 INtl~KDl~d~Np~IRaLALRtLs~Ir~~~-----i~e~-l~~~lkk~L~-D~~pYVRKtAalai~Kly~~~p--elv~~ 177 (746)
T PTZ00429 107 VNTFLQDTTNSSPVVRALAVRTMMCIRVSS-----VLEY-TLEPLRRAVA-DPDPYVRKTAAMGLGKLFHDDM--QLFYQ 177 (746)
T ss_pred HHHHHHHcCCCCHHHHHHHHHHHHcCCcHH-----HHHH-HHHHHHHHhc-CCCHHHHHHHHHHHHHHHhhCc--ccccc
Confidence 445555566889999999999997765422 2222 4666778886 8899999999999999865422 34456
Q ss_pred cCccHHHHHhhcCCCCHHHHHHHHHHHHHHhcChhHHHHHHhccHHHHHHHHhcCCCHHHHHHHHHHHHHhhccchhhhh
Q 006114 489 RGGGQLLAKTASKTDDPQTLRMVAGALANLCGNEKLHTMLEEDGAIKALLAMVRSGNIDVIAQVARGLANFAKCESRAIV 568 (660)
Q Consensus 489 ~g~I~~Ll~LL~~s~d~~v~~~Aa~aLanLa~~~~~r~~iv~~G~V~~Lv~lL~s~~~~v~~~Al~aLanLA~~~~~~~a 568 (660)
.|.++.|..+|.+ .||.|..+|+.+|..++...... .-...+.+..|+..+...++-.+...+.+|....-.+.
T Consensus 178 ~~~~~~L~~LL~D-~dp~Vv~nAl~aL~eI~~~~~~~-l~l~~~~~~~Ll~~L~e~~EW~Qi~IL~lL~~y~P~~~---- 251 (746)
T PTZ00429 178 QDFKKDLVELLND-NNPVVASNAAAIVCEVNDYGSEK-IESSNEWVNRLVYHLPECNEWGQLYILELLAAQRPSDK---- 251 (746)
T ss_pred cchHHHHHHHhcC-CCccHHHHHHHHHHHHHHhCchh-hHHHHHHHHHHHHHhhcCChHHHHHHHHHHHhcCCCCc----
Confidence 7788899998875 89999999999999998432222 22334566777777777777777777777754321110
Q ss_pred hcchhhhHHHhhcChHHHHHHhhcCCCHHHHHHHHHHHHHhhcCC--ccHHHHHhcCcHHHHHHHHh
Q 006114 569 QGQRKGRSHLMEDSALEWLIANSKTNSASTRRHVELALCHLAQNE--DNARDFISRGGAKELVQISI 633 (660)
Q Consensus 569 q~~~e~r~~Li~~G~v~~Lv~lL~s~d~~vr~~Aa~AL~nLa~~~--e~~~~Ive~G~l~~Lv~lL~ 633 (660)
.+ ....+..+...+.+.++.|.-.|+.+++++.... .....+. ....++|+.++.
T Consensus 252 ---~e------~~~il~~l~~~Lq~~N~AVVl~Aik~il~l~~~~~~~~~~~~~-~rl~~pLv~L~s 308 (746)
T PTZ00429 252 ---ES------AETLLTRVLPRMSHQNPAVVMGAIKVVANLASRCSQELIERCT-VRVNTALLTLSR 308 (746)
T ss_pred ---HH------HHHHHHHHHHHhcCCCHHHHHHHHHHHHHhcCcCCHHHHHHHH-HHHHHHHHHhhC
Confidence 01 1346677788888999999999999999997643 2111111 123366677643
No 81
>PF07888 CALCOCO1: Calcium binding and coiled-coil domain (CALCOCO1) like; InterPro: IPR012852 Proteins found in this family are similar to the coiled-coil transcriptional coactivator protein expressed by Mus musculus (CoCoA, Q8CGU1 from SWISSPROT). This protein binds to a highly conserved N-terminal domain of p160 coactivators, such as GRIP1 (Q61026 from SWISSPROT), and thus enhances transcriptional activation by a number of nuclear receptors. CoCoA has a central coiled-coil region with three leucine zipper motifs, which is required for its interaction with GRIP1 and may regulate the autonomous transcriptional activation activity of the C-terminal region [].
Probab=97.62 E-value=0.22 Score=56.81 Aligned_cols=63 Identities=19% Similarity=0.241 Sum_probs=29.3
Q ss_pred HHHHhhhhhhhhhhhhhhHHhHHHHHHHhhhhhccccchhHHHHHHH-------HHHHHHHHHHhHHHHHHH
Q 006114 242 IAELNKKLEDEHACFEGAVEQLDMVKKLLSDYQNSNQGQKEVHELCV-------KLKETRQLHESAVYEVQT 306 (660)
Q Consensus 242 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~Lk~-------~Le~e~~~~e~~e~E~~~ 306 (660)
.+.|..||.|..+-+-....+....+.-|-. .......+|.+|+. .|+.+..++.+++-++.+
T Consensus 334 ~aql~~qLad~~l~lke~~~q~~qEk~~l~~--~~e~~k~~ie~L~~el~~~e~~lqEer~E~qkL~~ql~k 403 (546)
T PF07888_consen 334 AAQLKLQLADASLELKEGRSQWAQEKQALQH--SAEADKDEIEKLSRELQMLEEHLQEERMERQKLEKQLGK 403 (546)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3455555555555555555555555554432 12222334444444 444444444444444443
No 82
>KOG0964 consensus Structural maintenance of chromosome protein 3 (sister chromatid cohesion complex Cohesin, subunit SMC3) [Cell cycle control, cell division, chromosome partitioning]
Probab=97.58 E-value=0.06 Score=63.89 Aligned_cols=229 Identities=17% Similarity=0.191 Sum_probs=146.7
Q ss_pred hhHHHHHHhhhhhhhHHHHhhhhHHHHHHHHHhhhhhhhhhhhhHHHHHHHHHHHhhhhhhhhhhhhhhHHHHHHhhHHH
Q 006114 99 ISYDESMRNLVTRSEFLEKENAHLELEVEKILGELNHQKDQNNLKREKIVQLEISLKNSKQQQLDNSSYQKVLADTTQMY 178 (660)
Q Consensus 99 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 178 (660)
..|.+++......++-+..+.+.|+..+.-|..+.++-++..+.+.+++--||...+..+++---|....+....+.+.+
T Consensus 254 ~~~~~~~~~~~d~~~~~~~~i~ele~~l~~l~~ekeq~~a~~t~~~k~kt~lel~~kdlq~~i~~n~q~r~~~l~~l~~~ 333 (1200)
T KOG0964|consen 254 EQYIDALDKVEDESEDLKCEIKELENKLTNLREEKEQLKARETKISKKKTKLELKIKDLQDQITGNEQQRNLALHVLQKV 333 (1200)
T ss_pred hhHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhHHHHHHhhhhhhhhhhHHHHHHHH
Confidence 34555556666777778888888888888888888888888888888888888877777777666666666677777777
Q ss_pred HHHHHHHHHHHHHHHhhhhchHHHHHHHHHHHhhhhhhHHHHhhhhhHHHHHHhhHHHHHHHHHHHHhhhhhhhhhhhhh
Q 006114 179 EKKITELIKQLEIEHARSEGAEEQVDTMKKLISDNQKSIEQYEMENSTYQKALADTTQLYEKKIAELNKKLEDEHACFEG 258 (660)
Q Consensus 179 ~~~~~~l~~~l~~e~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~ 258 (660)
+.+|.+-...|..=.-.+..+-++-+.++..|..+++.- +.+|.| -+..++|.+
T Consensus 334 ~~ki~e~~~EL~~I~Pky~~l~~ee~~~~~rl~~l~~~~-----------------~~l~~K---------qgr~sqFss 387 (1200)
T KOG0964|consen 334 KDKIEEKKDELSKIEPKYNSLVDEEKRLKKRLAKLEQKQ-----------------RDLLAK---------QGRYSQFSS 387 (1200)
T ss_pred HHHHHHHHHHHHHhhhHHHHHHhHHHHHHHHHHHHHHHH-----------------HHHHHh---------hccccccCc
Confidence 777777777666666666555555555555555555210 011111 245667777
Q ss_pred hHHhHHHHHHHhhhhhccccchhHH-HHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHhhhhccHHHHHHHHHHHHHHH
Q 006114 259 AVEQLDMVKKLLSDYQNSNQGQKEV-HELCVKLKETRQLHESAVYEVQTLKSEYKNLLEEKETMSDELQAARQRLLVEEK 337 (660)
Q Consensus 259 ~~~~~~~~~~~~~~~~~~~~~~~e~-~~Lk~~Le~e~~~~e~~e~E~~~lks~l~~l~~~~~~~~eel~~~~k~l~~e~~ 337 (660)
-++.=.-+.+-+-+.-..+.+..+- ..+++.+++.....+..-++++.+-+.+.+.....+...++.....+.+++...
T Consensus 388 k~eRDkwir~ei~~l~~~i~~~ke~e~~lq~e~~~~e~~l~~~~e~i~~l~~si~e~~~r~~~~~~~~~~~k~~~del~~ 467 (1200)
T KOG0964|consen 388 KEERDKWIRSEIEKLKRGINDTKEQENILQKEIEDLESELKEKLEEIKELESSINETKGRMEEFDAENTELKRELDELQD 467 (1200)
T ss_pred HHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHhhhhhHHHHHHHHHHHHHHHHHHHHH
Confidence 7766555555555544444444444 666677777766666666666666666655544444455566666666666666
Q ss_pred HhhhhHHHHHHHHhhC
Q 006114 338 QRKAIEYELVKLKKTA 353 (660)
Q Consensus 338 ~rkkLe~E~~~l~~~l 353 (660)
.|+.+=-|+..++..+
T Consensus 468 ~Rk~lWREE~~l~~~i 483 (1200)
T KOG0964|consen 468 KRKELWREEKKLRSLI 483 (1200)
T ss_pred HHHHHHHHHHHHHHHH
Confidence 6666666666665444
No 83
>KOG1517 consensus Guanine nucleotide binding protein MIP1 [Cell cycle control, cell division, chromosome partitioning]
Probab=97.58 E-value=0.0013 Score=77.86 Aligned_cols=210 Identities=18% Similarity=0.144 Sum_probs=158.4
Q ss_pred hCCCHHHHHHhhCCCCHHHHHHHHHHHHHhhC-CchhHHHHHHcCCHHHHHHHHccC--CCHHHHHHHHHHHHHhhcC-c
Q 006114 405 DEVGLPKILQLLTSEDPDVQIHAVKVVANLAA-EDINQEKIVEEGGLDALLLLLRTS--QNTTILRVASGAIANLAMN-E 480 (660)
Q Consensus 405 e~ggI~~LV~LL~s~d~~vr~~Aa~aL~nLa~-~~en~~~Ive~GgI~~Lv~LL~~s--~d~~v~~~Aa~AL~nLA~~-~ 480 (660)
.-|..|-++.||+++-.+++..-+.+=+.|.. ++..+.-++..+|-...+..|..+ -+++-+..|+-+|+.|+.+ +
T Consensus 510 sVGIFPYVLKLLQS~a~ELrpiLVFIWAKILAvD~SCQ~dLvKe~g~~YF~~vL~~~~~~~~EqrtmaAFVLAviv~nf~ 589 (1387)
T KOG1517|consen 510 SVGIFPYVLKLLQSSARELRPILVFIWAKILAVDPSCQADLVKENGYKYFLQVLDPSQAIPPEQRTMAAFVLAVIVRNFK 589 (1387)
T ss_pred ccchHHHHHHHhccchHhhhhhHHHHHHHHHhcCchhHHHHHhccCceeEEEEecCcCCCCHHHHHHHHHHHHHHHcccc
Confidence 44778889999999999999877776666544 777778888888888888888742 2457788899999999887 8
Q ss_pred hhHHHHHhcCccHHHHHhhcCCCCHHHHHHHHHHHHHHh-cChhHHHHHHhccHHHHHHHHhcCCCHHHHHHHHHHHHHh
Q 006114 481 MNQGLIMSRGGGQLLAKTASKTDDPQTLRMVAGALANLC-GNEKLHTMLEEDGAIKALLAMVRSGNIDVIAQVARGLANF 559 (660)
Q Consensus 481 ~n~~~Ive~g~I~~Ll~LL~~s~d~~v~~~Aa~aLanLa-~~~~~r~~iv~~G~V~~Lv~lL~s~~~~v~~~Al~aLanL 559 (660)
-.++.-.+.+.|...+..|.+++.|-.+.-+|-+|..|= .++..|..=++.++...|+.++..+-|+|+..|+.+|+.|
T Consensus 590 lGQ~acl~~~li~iCle~lnd~~~pLLrQW~~icLG~LW~d~~~Arw~G~r~~AhekL~~~LsD~vpEVRaAAVFALgtf 669 (1387)
T KOG1517|consen 590 LGQKACLNGNLIGICLEHLNDDPEPLLRQWLCICLGRLWEDYDEARWSGRRDNAHEKLILLLSDPVPEVRAAAVFALGTF 669 (1387)
T ss_pred hhHHHhccccHHHHHHHHhcCCccHHHHHHHHHHHHHHhhhcchhhhccccccHHHHHHHHhcCccHHHHHHHHHHHHHH
Confidence 889999999999999999976446777777778888774 6777777778889999999999999999999999999999
Q ss_pred hccchhhhhhcchhh-------hHHHhhcChH----HHHHHhhcCCCHHHHHHHHHHHHHhhcCCc
Q 006114 560 AKCESRAIVQGQRKG-------RSHLMEDSAL----EWLIANSKTNSASTRRHVELALCHLAQNED 614 (660)
Q Consensus 560 A~~~~~~~aq~~~e~-------r~~Li~~G~v----~~Lv~lL~s~d~~vr~~Aa~AL~nLa~~~e 614 (660)
-...++...+..... +..+..+..+ -.++.++++.++-+|...+-+|.+++....
T Consensus 670 l~~~~d~fde~~~~~~~~~~l~~~~~~~E~~i~~~~~~ll~~vsdgsplvr~ev~v~ls~~~~g~~ 735 (1387)
T KOG1517|consen 670 LSNGSDNFDEQTLVVEEEIDLDDERTSIEDLIIKGLMSLLALVSDGSPLVRTEVVVALSHFVVGYV 735 (1387)
T ss_pred hcccccccchhhhhhhhhhcchhhhhhHHHHHHhhHHHHHHHHhccchHHHHHHHHHHHHHHHhhH
Confidence 864321110000000 0111112222 367777888999999999999999876543
No 84
>TIGR00606 rad50 rad50. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=97.54 E-value=0.31 Score=62.17 Aligned_cols=182 Identities=14% Similarity=0.116 Sum_probs=77.5
Q ss_pred HHHHHHHHHHHhhHHHHHHhhhhhhhHHHHhhhhHHHHHHHH---HhhhhhhhhhhhhHHHHHHHHHHHhhhhhhhhhhh
Q 006114 88 YEFEKQLRESQISYDESMRNLVTRSEFLEKENAHLELEVEKI---LGELNHQKDQNNLKREKIVQLEISLKNSKQQQLDN 164 (660)
Q Consensus 88 ~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 164 (660)
.+++.++..++..|... ...++.+..+...+..++.+| +..+...+..-+..-....+||-+|...+..--+.
T Consensus 825 ~ele~ei~~~~~el~~l----~~~~e~l~~e~e~~~~eI~~Lq~ki~el~~~klkl~~~l~~r~~le~~L~el~~el~~l 900 (1311)
T TIGR00606 825 QQVNQEKQEKQHELDTV----VSKIELNRKLIQDQQEQIQHLKSKTNELKSEKLQIGTNLQRRQQFEEQLVELSTEVQSL 900 (1311)
T ss_pred HHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44555555555554443 333334444444444445444 33333222222223334455555555555444444
Q ss_pred hhhHHHHHHhhHHHHHHHHHHHHHHHHHHhhhhchHHHHHHHHHHHhhhhhhHHHHhhhhhHHHHHHhh----HHHHHHH
Q 006114 165 SSYQKVLADTTQMYEKKITELIKQLEIEHARSEGAEEQVDTMKKLISDNQKSIEQYEMENSTYQKALAD----TTQLYEK 240 (660)
Q Consensus 165 ~~~~~~~~~~~~~~~~~~~~l~~~l~~e~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~l~~----~~~~~~~ 240 (660)
....+.+...+..+..++..+...++.-... .+.+...++..+..++....+...-|...+.-+.. --...+.
T Consensus 901 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~y~~~~~~~qL~~~e~ 977 (1311)
T TIGR00606 901 IREIKDAKEQDSPLETFLEKDQQEKEELISS---KETSNKKAQDKVNDIKEKVKNIHGYMKDIENKIQDGKDDYLKQKET 977 (1311)
T ss_pred HHHHHHHHHHhhhhhHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHH
Confidence 4444444444444444444444444332222 22222333333334333333333444333322221 1122334
Q ss_pred HHHHHhhhhhhhhhhhhhhHHhHHHHHHHhhhhhcc
Q 006114 241 KIAELNKKLEDEHACFEGAVEQLDMVKKLLSDYQNS 276 (660)
Q Consensus 241 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 276 (660)
++.++...+++-.+.......+++.+.+-+++.+..
T Consensus 978 el~~~~~~ie~le~e~~~l~~~i~~l~kel~~~~~~ 1013 (1311)
T TIGR00606 978 ELNTVNAQLEECEKHQEKINEDMRLMRQDIDTQKIQ 1013 (1311)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 444444444444455555555555555555554433
No 85
>KOG4674 consensus Uncharacterized conserved coiled-coil protein [Function unknown]
Probab=97.54 E-value=0.39 Score=61.27 Aligned_cols=132 Identities=23% Similarity=0.237 Sum_probs=62.4
Q ss_pred HHHHHHhhHHHHHhhHHHHHHHHHHHHHHHHHhhhhchHHHHH---HHHHHHhhHHHHHHhhhhhhhHHHHhhhhHHHHH
Q 006114 50 LLRECQISYDEAKDNLVTQVELLTAKIEMQQKLRENDKYEFEK---QLRESQISYDESMRNLVTRSEFLEKENAHLELEV 126 (660)
Q Consensus 50 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 126 (660)
+..+-+.+|......++.+.+.|.-++... |.+|++ .++.+.++++-.+++..++.+-+..++.++-.++
T Consensus 788 ~~~~~e~s~~~~k~~~e~~i~eL~~el~~l-------k~klq~~~~~~r~l~~~~~~~l~~~~~~i~~~~~~~~~~~~~l 860 (1822)
T KOG4674|consen 788 QKNELEESEMATKDKCESRIKELERELQKL-------KKKLQEKSSDLRELTNSLEKQLENAQNLVDELESELKSLLTSL 860 (1822)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333444555555555555555555544433 333333 3555555555555555555555555555554444
Q ss_pred HHHHhhhhhhhhhhhhHHHHHHHHHHHhhhhhhhhhhhh-----hhHHHHHHhhHHHHHHHHHHHHHHHHHHhh
Q 006114 127 EKILGELNHQKDQNNLKREKIVQLEISLKNSKQQQLDNS-----SYQKVLADTTQMYEKKITELIKQLEIEHAR 195 (660)
Q Consensus 127 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~l~~~l~~e~~~ 195 (660)
......+. -+..++.+|+-.|+-.+.+.+... +.-..+.++......++..++.+|.+....
T Consensus 861 ~~~~~~~~-------~le~k~~eL~k~l~~~~~~~~~l~~~~~~~d~~~~~~~Lr~~~eq~~~l~~~L~~a~s~ 927 (1822)
T KOG4674|consen 861 DSVSTNIA-------KLEIKLSELEKRLKSAKTQLLNLDSKSSNEDATILEDTLRKELEEITDLKEELTDALSQ 927 (1822)
T ss_pred HHHHHHHH-------HHHHHHHHHHHHHHHhHHHHhhccccchhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44444333 334445555555555554444332 223344555444444444444444444433
No 86
>KOG0996 consensus Structural maintenance of chromosome protein 4 (chromosome condensation complex Condensin, subunit C) [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning]
Probab=97.53 E-value=0.22 Score=60.42 Aligned_cols=283 Identities=21% Similarity=0.212 Sum_probs=170.4
Q ss_pred hhHHHHHhhHHHHHHHHHHHHHHHHHhhhhchHHHHHHHHHHHhhHHHHHHhhhhhhhHHHHhhhhHHHHHHHHHhhhhh
Q 006114 56 ISYDEAKDNLVTQVELLTAKIEMQQKLRENDKYEFEKQLRESQISYDESMRNLVTRSEFLEKENAHLELEVEKILGELNH 135 (660)
Q Consensus 56 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 135 (660)
..|..--+++..+|+.|+..-.-+. +.-...|++.........++ .+||.+||.-+-.-.+....-+..
T Consensus 263 ~ry~~~I~~~~~rv~~L~e~~sek~----~~~k~~e~ek~~lE~~k~~a-------l~fL~kenel~~~~~~~~q~~~~~ 331 (1293)
T KOG0996|consen 263 NRYKEPIEELMRRVERLNEDRSEKE----NRVKLVEKEKKALEGPKNEA-------LEFLKKENELFRKKNKLCQYILYE 331 (1293)
T ss_pred cccchhHHHHHHHHHhhhHHHHHHH----HHHHHHHHHHHHHhhhHHHH-------HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4566666677778887776544332 11222344444444444444 578888887776666666666666
Q ss_pred hhhhhhhHHHHHHHHHHHhhhhhhhhh-hhhhhHH---HHHHhhHHHHH----HHHHHHHHHHHHHhhhhchHHHHHHHH
Q 006114 136 QKDQNNLKREKIVQLEISLKNSKQQQL-DNSSYQK---VLADTTQMYEK----KITELIKQLEIEHARSEGAEEQVDTMK 207 (660)
Q Consensus 136 ~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~---~~~~~~~~~~~----~~~~l~~~l~~e~~~~~~~~~~~~~l~ 207 (660)
-.+....+.++...++-.|+...-.-- ++..+.. ..-+++..+.+ +...+++.+.+-......+++.+..+.
T Consensus 332 ~~~ki~~~~~~~~~~~e~lk~~~ek~~~e~~~~~~k~e~~~~~~~e~~~~~kn~~~~~k~~~~~~e~~~vk~~E~lK~~~ 411 (1293)
T KOG0996|consen 332 SRAKIAEMQEELEKIEEGLKDENEKFDIESNEEVEKNEAVKKEIKERAKELKNKFESLKKKFQDLEREDVKREEKLKRLT 411 (1293)
T ss_pred HHHHHHHHHHHHHHHHhHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 566666666666666666665433221 2222222 22222222222 333555666666666777777777777
Q ss_pred HHHhhhhhhHHHHhhhhhHHHHHHhhHHHHHHHHHHHHhhhhhhhhhhhhhhHHhHHHHHHHhhhhhccccchhHHHHHH
Q 006114 208 KLISDNQKSIEQYEMENSTYQKALADTTQLYEKKIAELNKKLEDEHACFEGAVEQLDMVKKLLSDYQNSNQGQKEVHELC 287 (660)
Q Consensus 208 ~~l~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~Lk 287 (660)
+..+.+.+.+.....+=+...++.+ -|.-.|.+++..+++=.-..+..+..|+..+ .|=.|....-.+|+..++
T Consensus 412 ~k~kKleke~ek~~~~~~e~e~~pe----~~~~~i~~~~~ei~~L~~~~~~~~~~l~e~~--~~l~~~t~~~~~e~~~~e 485 (1293)
T KOG0996|consen 412 SKIKKLEKEIEKARRKKSELEKAPE----KARIEIQKCQTEIEQLEELLEKEERELDEIL--DSLKQETEGIREEIEKLE 485 (1293)
T ss_pred HHHHHHHHHHHHHHhhHHHHHhCch----hhHhHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHhhhhhhhHHHHHHHH
Confidence 7777777666655555555555444 2444555555555544444444444454433 333456666778889999
Q ss_pred HHHHHHHHHHHhHHHHHHHHHHHHHHHHHhhhhccHHHHHHHHHHHHHHHHhhhhHHHHHHHHhhCCC
Q 006114 288 VKLKETRQLHESAVYEVQTLKSEYKNLLEEKETMSDELQAARQRLLVEEKQRKAIEYELVKLKKTAPE 355 (660)
Q Consensus 288 ~~Le~e~~~~e~~e~E~~~lks~l~~l~~~~~~~~eel~~~~k~l~~e~~~rkkLe~E~~~l~~~l~~ 355 (660)
+.|.....+.-.+..|++..+|+|..|..-..++..-+..+++.|..-......-..++..+...+..
T Consensus 486 kel~~~~~~~n~~~~e~~vaesel~~L~~~~~~~~~~~e~lk~~L~~~~~~~~e~~~~l~~~k~~l~~ 553 (1293)
T KOG0996|consen 486 KELMPLLKQVNEARSELDVAESELDILLSRHETGLKKVEELKGKLLASSESLKEKKTELDDLKEELPS 553 (1293)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhh
Confidence 99999999999999999999999998888777776667777777666554444444555555544433
No 87
>PF01576 Myosin_tail_1: Myosin tail; InterPro: IPR002928 Muscle contraction is caused by sliding between the thick and thin filaments of the myofibril. Myosin is a major component of thick filaments and exists as a hexamer of 2 heavy chains [], 2 alkali light chains, and 2 regulatory light chains. The heavy chain can be subdivided into the N-terminal globular head and the C-terminal coiled-coil rod-like tail, although some forms have a globular region in their C-terminal. There are many cell-specific isoforms of myosin heavy chains, coded for by a multi-gene family []. Myosin interacts with actin to convert chemical energy, in the form of ATP, to mechanical energy []. The 3-D structure of the head portion of myosin has been determined [] and a model for actin-myosin complex has been constructed []. This family consists of the coiled-coil myosin heavy chain tail region. The coiled-coil is composed of the tail from two molecules of myosin. These can then assemble into the macromolecular thick filament []. The coiled-coil region provides the structural backbone of the thick filament [].; GO: 0003774 motor activity, 0016459 myosin complex; PDB: 2LNK_C 3ZWH_Q.
Probab=97.53 E-value=2e-05 Score=94.99 Aligned_cols=232 Identities=21% Similarity=0.314 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHhhHHHHHhhHHHHHHHHHHHHHHHHH-------hh---hhchHHHHHHHHHHHhhHHHHHHhhhhhhh
Q 006114 44 KCELEKLLRECQISYDEAKDNLVTQVELLTAKIEMQQK-------LR---ENDKYEFEKQLRESQISYDESMRNLVTRSE 113 (660)
Q Consensus 44 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------~~---~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~ 113 (660)
+...||...+...-++++...|+...+.-++.+|...| || +......|..+...+..|.+.+-.|..+++
T Consensus 62 R~kaek~r~dL~~ELe~l~~~Lee~~~~t~aq~E~~kkrE~El~~Lrr~LEe~~~~~e~~~~~lrkkh~~~~~eL~eqle 141 (859)
T PF01576_consen 62 RAKAEKQRRDLSEELEELKERLEEAGGATQAQIELNKKREAELAKLRRDLEEANLQHEATLAELRKKHQDAVAELNEQLE 141 (859)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhCcHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHH
Confidence 33556666777777777777777777776666665332 21 122344556788888888888888888888
Q ss_pred H-------HHHhhhhHHHHHHHHHhhhhhhhhhhhhHHHHHHHHHHHhhhhhhhhhhhhhhHHHHHHhhHHHHHHHHHHH
Q 006114 114 F-------LEKENAHLELEVEKILGELNHQKDQNNLKREKIVQLEISLKNSKQQQLDNSSYQKVLADTTQMYEKKITELI 186 (660)
Q Consensus 114 ~-------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ 186 (660)
+ +++++..|+.|+.+|..++..-...+......+.++|..|...+-+--+......++...+..++.++.+|.
T Consensus 142 ~lqk~k~~lEK~k~~l~~e~~dL~~~l~~~~k~k~~~Ek~~K~lE~qL~El~~klee~er~~~el~~~k~kL~~E~~eL~ 221 (859)
T PF01576_consen 142 QLQKQKAKLEKEKSQLEAELDDLQAQLDSLQKAKQEAEKKRKQLEAQLNELQAKLEESERQRNELTEQKAKLQSENSELT 221 (859)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHhHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5 555666667888888888877777777778888999999999888877777777799999999999999999
Q ss_pred HHHHHHHhhhhchHHHHHHHHHHHhhhhhhHHHHhhhhhHHHHHHhhHHHHHHHHHHHHhhhhhhhhhhhhhhHHhHHHH
Q 006114 187 KQLEIEHARSEGAEEQVDTMKKLISDNQKSIEQYEMENSTYQKALADTTQLYEKKIAELNKKLEDEHACFEGAVEQLDMV 266 (660)
Q Consensus 187 ~~l~~e~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 266 (660)
.+|++.-.....+......|..+|.+++.... +.+.....|...-+..+..+..|..++++|......++.+|.-+
T Consensus 222 ~qLee~e~~~~~l~r~k~~L~~qLeelk~~le----eEtr~k~~L~~~l~~le~e~~~L~eqleeE~e~k~~l~~qlsk~ 297 (859)
T PF01576_consen 222 RQLEEAESQLSQLQREKSSLESQLEELKRQLE----EETRAKQALEKQLRQLEHELEQLREQLEEEEEAKSELERQLSKL 297 (859)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHH----hHhhhhhhhHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHH
Confidence 99999999999999999999999999996554 33445555666666778888899999999998888888888877
Q ss_pred HHHhhhhhccccc
Q 006114 267 KKLLSDYQNSNQG 279 (660)
Q Consensus 267 ~~~~~~~~~~~~~ 279 (660)
+.-|.+...-...
T Consensus 298 ~~El~~~k~K~e~ 310 (859)
T PF01576_consen 298 NAELEQWKKKYEE 310 (859)
T ss_dssp -------------
T ss_pred hhHHHHHHHHHHH
Confidence 7766665544433
No 88
>PF12348 CLASP_N: CLASP N terminal; InterPro: IPR024395 This domain is found in the N-terminal region of CLIP-associated proteins (CLASPs), which are widely conserved microtubule plus-end-tracking proteins that regulate the stability of dynamic microtubules [, ]. The domain is also found in other proteins involved in microtubule binding, including STU1, MOR1 and spindle pole body component Alp14.; PDB: 2QK2_A.
Probab=97.43 E-value=0.0022 Score=64.93 Aligned_cols=185 Identities=15% Similarity=0.051 Sum_probs=112.3
Q ss_pred CCCCHHHHHHHHHHHHHhhC-C--chhHHHHHHc--CCHHHHHHHHccCCCHHHHHHHHHHHHHhhcCchhHHHHHhcCc
Q 006114 417 TSEDPDVQIHAVKVVANLAA-E--DINQEKIVEE--GGLDALLLLLRTSQNTTILRVASGAIANLAMNEMNQGLIMSRGG 491 (660)
Q Consensus 417 ~s~d~~vr~~Aa~aL~nLa~-~--~en~~~Ive~--GgI~~Lv~LL~~s~d~~v~~~Aa~AL~nLA~~~~n~~~Ive~g~ 491 (660)
.+.+...|..|+..|..+.. + ......++.. ..++.++..+. +....|...|+.++..|+..-...-.-.-...
T Consensus 17 ~~~~W~~r~~al~~L~~l~~~~~~~~~~~~~~~~l~~~~~~i~~~l~-d~Rs~v~~~A~~~l~~l~~~l~~~~~~~~~~~ 95 (228)
T PF12348_consen 17 SESDWEERVEALQKLRSLIKGNAPEDFPPDFVECLRQLLDAIIKQLS-DLRSKVSKTACQLLSDLARQLGSHFEPYADIL 95 (228)
T ss_dssp T-SSHHHHHHHHHHHHHHHHH-B-----HHHHHHHH---HHHHH-S--HH---HHHHHHHHHHHHHHHHGGGGHHHHHHH
T ss_pred CccCHHHHHHHHHHHHHHHHcCCccccHHHHHHHHHHhHHHHHHHHh-hhHHHHHHHHHHHHHHHHHHHhHhHHHHHHHH
Confidence 56788899999999988877 3 2333333321 23456666665 45567888999999999876322222223447
Q ss_pred cHHHHHhhcCCCCHHHHHHHHHHHHHHhcChhHHHHHHhccH-HHHHHHHhcCCCHHHHHHHHHHHHHhhccchhhhhhc
Q 006114 492 GQLLAKTASKTDDPQTLRMVAGALANLCGNEKLHTMLEEDGA-IKALLAMVRSGNIDVIAQVARGLANFAKCESRAIVQG 570 (660)
Q Consensus 492 I~~Ll~LL~~s~d~~v~~~Aa~aLanLa~~~~~r~~iv~~G~-V~~Lv~lL~s~~~~v~~~Al~aLanLA~~~~~~~aq~ 570 (660)
+|.|+..+.+ ....++..|..+|..++.+-.... .+ ++.+...+.+.++.++..++..|..+....+...
T Consensus 96 l~~Ll~~~~~-~~~~i~~~a~~~L~~i~~~~~~~~-----~~~~~~l~~~~~~Kn~~vR~~~~~~l~~~l~~~~~~~--- 166 (228)
T PF12348_consen 96 LPPLLKKLGD-SKKFIREAANNALDAIIESCSYSP-----KILLEILSQGLKSKNPQVREECAEWLAIILEKWGSDS--- 166 (228)
T ss_dssp HHHHHHGGG----HHHHHHHHHHHHHHHTTS-H-------HHHHHHHHHHTT-S-HHHHHHHHHHHHHHHTT--------
T ss_pred HHHHHHHHcc-ccHHHHHHHHHHHHHHHHHCCcHH-----HHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHccchH---
Confidence 8999999875 566788888899999885433111 23 5667777889999999999999998875432000
Q ss_pred chhhhHHHhhcChHHHHHHhhcCCCHHHHHHHHHHHHHhhcC
Q 006114 571 QRKGRSHLMEDSALEWLIANSKTNSASTRRHVELALCHLAQN 612 (660)
Q Consensus 571 ~~e~r~~Li~~G~v~~Lv~lL~s~d~~vr~~Aa~AL~nLa~~ 612 (660)
+.......-...++.+...+.+.++.||..|-.+++.+..+
T Consensus 167 -~~l~~~~~~~~l~~~l~~~l~D~~~~VR~~Ar~~~~~l~~~ 207 (228)
T PF12348_consen 167 -SVLQKSAFLKQLVKALVKLLSDADPEVREAARECLWALYSH 207 (228)
T ss_dssp -GGG--HHHHHHHHHHHHHHHTSS-HHHHHHHHHHHHHHHHH
T ss_pred -hhhcccchHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHH
Confidence 00000111144778888999999999999999999998553
No 89
>PF07888 CALCOCO1: Calcium binding and coiled-coil domain (CALCOCO1) like; InterPro: IPR012852 Proteins found in this family are similar to the coiled-coil transcriptional coactivator protein expressed by Mus musculus (CoCoA, Q8CGU1 from SWISSPROT). This protein binds to a highly conserved N-terminal domain of p160 coactivators, such as GRIP1 (Q61026 from SWISSPROT), and thus enhances transcriptional activation by a number of nuclear receptors. CoCoA has a central coiled-coil region with three leucine zipper motifs, which is required for its interaction with GRIP1 and may regulate the autonomous transcriptional activation activity of the C-terminal region [].
Probab=97.39 E-value=0.15 Score=58.16 Aligned_cols=56 Identities=27% Similarity=0.389 Sum_probs=28.9
Q ss_pred HHHHHHHHHhhHHHHHHhhhhhhhHHHHhhhhHHHHHHHHHhhhhhhhhhhhhHHHHHHH
Q 006114 90 FEKQLRESQISYDESMRNLVTRSEFLEKENAHLELEVEKILGELNHQKDQNNLKREKIVQ 149 (660)
Q Consensus 90 ~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 149 (660)
|+++|.+|+....+. ...-..|++++..|..++.+|..+|.+.+.....+..+...
T Consensus 141 lQ~qlE~~qkE~eeL----~~~~~~Le~e~~~l~~~v~~l~~eL~~~~ee~e~L~~~~ke 196 (546)
T PF07888_consen 141 LQNQLEECQKEKEEL----LKENEQLEEEVEQLREEVERLEAELEQEEEEMEQLKQQQKE 196 (546)
T ss_pred HHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 455666665554443 22333455555666666666666665555544444433333
No 90
>PF14664 RICTOR_N: Rapamycin-insensitive companion of mTOR, N-term
Probab=97.37 E-value=0.016 Score=63.64 Aligned_cols=226 Identities=18% Similarity=0.143 Sum_probs=148.0
Q ss_pred CHHHHHHhhCCCCHHHHHHHHHHHHHhhCCchhHHHHHHcCCHHHHHHHHccC-CCHHHHHHHHHHHHHhhcCchhHHHH
Q 006114 408 GLPKILQLLTSEDPDVQIHAVKVVANLAAEDINQEKIVEEGGLDALLLLLRTS-QNTTILRVASGAIANLAMNEMNQGLI 486 (660)
Q Consensus 408 gI~~LV~LL~s~d~~vr~~Aa~aL~nLa~~~en~~~Ive~GgI~~Lv~LL~~s-~d~~v~~~Aa~AL~nLA~~~~n~~~I 486 (660)
..+.+..++-+++..||..|.+++..+..++..-..+...+.--.++..|..+ .+..=+.+|...++.+...+.+...
T Consensus 26 ~~~~i~~~lL~~~~~vraa~yRilRy~i~d~~~l~~~~~l~id~~ii~SL~~~~~~~~ER~QALkliR~~l~~~~~~~~- 104 (371)
T PF14664_consen 26 FGERIQCMLLSDSKEVRAAGYRILRYLISDEESLQILLKLHIDIFIIRSLDRDNKNDVEREQALKLIRAFLEIKKGPKE- 104 (371)
T ss_pred HHHHHHHHHCCCcHHHHHHHHHHHHHHHcCHHHHHHHHHcCCchhhHhhhcccCCChHHHHHHHHHHHHHHHhcCCccc-
Confidence 45555555556669999999999999999998888888887655556666433 2333467899999888765443222
Q ss_pred HhcCccHHHHHhhcCCCCHHHHHHHHHHHHHHh-cChhHHHHHHhccHHHHHHHHhcCCCHHHHHHHHHHHHHhhccchh
Q 006114 487 MSRGGGQLLAKTASKTDDPQTLRMVAGALANLC-GNEKLHTMLEEDGAIKALLAMVRSGNIDVIAQVARGLANFAKCESR 565 (660)
Q Consensus 487 ve~g~I~~Ll~LL~~s~d~~v~~~Aa~aLanLa-~~~~~r~~iv~~G~V~~Lv~lL~s~~~~v~~~Al~aLanLA~~~~~ 565 (660)
+..|++..++.+..+ ++...+..|..+|+.++ .+|+ .++.+||+..|+..+-.+...+...++.++..+-.+
T Consensus 105 ~~~~vvralvaiae~-~~D~lr~~cletL~El~l~~P~---lv~~~gG~~~L~~~l~d~~~~~~~~l~~~lL~lLd~--- 177 (371)
T PF14664_consen 105 IPRGVVRALVAIAEH-EDDRLRRICLETLCELALLNPE---LVAECGGIRVLLRALIDGSFSISESLLDTLLYLLDS--- 177 (371)
T ss_pred CCHHHHHHHHHHHhC-CchHHHHHHHHHHHHHHhhCHH---HHHHcCCHHHHHHHHHhccHhHHHHHHHHHHHHhCC---
Confidence 366788999999976 55578888889999998 5563 467899999999998876656778888888887744
Q ss_pred hhhhcchhhhHHHhhcChHHHHHHhhcC-------CCH--HHHHHHHHHHH-HhhcCCccHHHHHh-cCcHHHHHHHHhc
Q 006114 566 AIVQGQRKGRSHLMEDSALEWLIANSKT-------NSA--STRRHVELALC-HLAQNEDNARDFIS-RGGAKELVQISIE 634 (660)
Q Consensus 566 ~~aq~~~e~r~~Li~~G~v~~Lv~lL~s-------~d~--~vr~~Aa~AL~-nLa~~~e~~~~Ive-~G~l~~Lv~lL~s 634 (660)
+..|..+...--+..++.-..+ ++. ..-..++.++. -|-.|+....-... ..++..|+..+..
T Consensus 178 ------p~tR~yl~~~~dL~~l~apftd~~~~~~~~~~~~~~l~~s~~ai~~~LrsW~GLl~l~~~~~~~lksLv~~L~~ 251 (371)
T PF14664_consen 178 ------PRTRKYLRPGFDLESLLAPFTDFHYRKIKDDRELERLQASAKAISTLLRSWPGLLYLSMNDFRGLKSLVDSLRL 251 (371)
T ss_pred ------cchhhhhcCCccHHHHHHhhhhhhccccccchHHHHHHHHHHHHHHHHhcCCceeeeecCCchHHHHHHHHHcC
Confidence 3455555543334333322211 122 22333444444 34455543222222 2578888998887
Q ss_pred CChHHHHHHHHHHH
Q 006114 635 SSREDIRNLAKKTM 648 (660)
Q Consensus 635 ~s~~~ir~~A~~~L 648 (660)
++.+ +|.....++
T Consensus 252 p~~~-ir~~Ildll 264 (371)
T PF14664_consen 252 PNPE-IRKAILDLL 264 (371)
T ss_pred CCHH-HHHHHHHHH
Confidence 6654 555555443
No 91
>KOG0933 consensus Structural maintenance of chromosome protein 2 (chromosome condensation complex Condensin, subunit E) [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning]
Probab=97.37 E-value=0.6 Score=56.03 Aligned_cols=253 Identities=16% Similarity=0.174 Sum_probs=135.5
Q ss_pred HHHHHHHHhhHHHHHHhhhhhhhHHHHhhhhHHHHHHHHHhhhhhhhhhhhhHHHHHHHHHHHhhhhhhhhhhhhhhHHH
Q 006114 91 EKQLRESQISYDESMRNLVTRSEFLEKENAHLELEVEKILGELNHQKDQNNLKREKIVQLEISLKNSKQQQLDNSSYQKV 170 (660)
Q Consensus 91 e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 170 (660)
++.+..|..+|... -+|..+++.+|++|-..-..+.|. .+.-||-.+.....--.-..+-...
T Consensus 257 ~~~i~~l~e~~~k~-----------~~ei~~le~~ikei~~~rd~em~~------~~~~L~~~~~~~~~~~tr~~t~l~~ 319 (1174)
T KOG0933|consen 257 KDKIAKLDESLGKT-----------DKEIESLEKEIKEIEQQRDAEMGG------EVKALEDKLDSLQNEITREETSLNL 319 (1174)
T ss_pred HHHHHHHHHHHHhH-----------HHHHHHHHHHHHHHHHHHHHHhch------hhhhHHHHHHHHHHHHHHHHHHHHH
Confidence 44567777777766 456666777777776655444432 2233333332222222222233335
Q ss_pred HHHhhHHHHHHHHHHHHHHHHHHhhhhchHHHHHHHHHHHhhhhhhHHHHhhhhhHHHHHHhh---HHHHHHHHHHHHhh
Q 006114 171 LADTTQMYEKKITELIKQLEIEHARSEGAEEQVDTMKKLISDNQKSIEQYEMENSTYQKALAD---TTQLYEKKIAELNK 247 (660)
Q Consensus 171 ~~~~~~~~~~~~~~l~~~l~~e~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~l~~---~~~~~~~~~~~~~~ 247 (660)
.-+|++.-+++++++.+.+++.... +.++-..+....+ .+.......++ +-..|+..+..|.-
T Consensus 320 ~~~tl~~e~~k~e~i~~~i~e~~~~---l~~k~~~~~~~~~-----------~~~~~ke~~~~~s~~~e~~e~~~eslt~ 385 (1174)
T KOG0933|consen 320 KKETLNGEEEKLEEIRKNIEEDRKK---LKEKEKAMAKVEE-----------GYEKLKEAFQEDSKLLEKAEELVESLTA 385 (1174)
T ss_pred HHHHHhhhHHHHHHHHHhHHHHHHH---HHHHHHHHhhhhh-----------hHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 5667777777777777766554422 2222222222222 22223333333 33344455555554
Q ss_pred hhhhhhhhhhhhHHhHHHHHHHhhhhhccccch--------hHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHhhh
Q 006114 248 KLEDEHACFEGAVEQLDMVKKLLSDYQNSNQGQ--------KEVHELCVKLKETRQLHESAVYEVQTLKSEYKNLLEEKE 319 (660)
Q Consensus 248 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--------~e~~~Lk~~Le~e~~~~e~~e~E~~~lks~l~~l~~~~~ 319 (660)
=+.....--.+.++||..+|.-+|+.+.-+.+. .|+...+-.+......+.+-+.++..+|....++...-.
T Consensus 386 G~Ss~~~~e~~l~~ql~~aK~~~~~~~t~~k~a~~k~e~~~~elk~~e~e~~t~~~~~~~~~~~ld~~q~eve~l~~~l~ 465 (1174)
T KOG0933|consen 386 GLSSNEDEEKTLEDQLRDAKITLSEASTEIKQAKLKLEHLRKELKLREGELATASAEYVKDIEELDALQNEVEKLKKRLQ 465 (1174)
T ss_pred ccccCccchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 443322233456789999999999887544332 333444444455555556666666666666665554444
Q ss_pred hccHH---HHHHHHHHHHHHHHhhhhHHHHHHHHhhCCCCCCccc-cCCCcccchhhhh
Q 006114 320 TMSDE---LQAARQRLLVEEKQRKAIEYELVKLKKTAPEHDDDFE-DKKPYTKDYISKG 374 (660)
Q Consensus 320 ~~~ee---l~~~~k~l~~e~~~rkkLe~E~~~l~~~l~~~~~~~~-~~~~~~~g~i~~l 374 (660)
++.-+ ...++++.........+|..+.+.+.++++-..+.-. |.|.+++..|.-+
T Consensus 466 ~l~~~~~~~e~l~q~~~~l~~~~~~lk~~~~~l~a~~~~~~f~Y~dP~~nfdrs~V~G~ 524 (1174)
T KOG0933|consen 466 SLGYKIGQEEALKQRRAKLHEDIGRLKDELDRLLARLANYEFTYQDPEPNFDRSKVKGL 524 (1174)
T ss_pred hcCCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcccccccCCCCccchHHHHHHH
Confidence 43221 2344455555555568999999999999987666553 4444666433333
No 92
>KOG1059 consensus Vesicle coat complex AP-3, delta subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=97.32 E-value=0.003 Score=72.48 Aligned_cols=221 Identities=13% Similarity=0.069 Sum_probs=137.5
Q ss_pred CCCcccchhhhhhcccCCCccccccchhhh---hhcCchhHHHHHhCCCHHHHHHhhCCCCHHHHHHHHHHHHHhhC-Cc
Q 006114 363 KKPYTKDYISKGSSRFGAPMSLQKSNPSRE---LSGQRATIAKICDEVGLPKILQLLTSEDPDVQIHAVKVVANLAA-ED 438 (660)
Q Consensus 363 ~~~~~~g~i~~l~~~L~~~~~~vr~~~~~~---laa~~~~~~~I~e~ggI~~LV~LL~s~d~~vr~~Aa~aL~nLa~-~~ 438 (660)
|+++.|+--..++..+.+..+.+|..+... +....+.. -...+|+|+.-|..+|+.|+.+|+.+++.||. +|
T Consensus 138 TpdLARDLa~Dv~tLL~sskpYvRKkAIl~lykvFLkYPeA----lr~~FprL~EkLeDpDp~V~SAAV~VICELArKnP 213 (877)
T KOG1059|consen 138 TPDLARDLADDVFTLLNSSKPYVRKKAILLLYKVFLKYPEA----LRPCFPRLVEKLEDPDPSVVSAAVSVICELARKNP 213 (877)
T ss_pred CchhhHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHhhhHh----HhhhHHHHHHhccCCCchHHHHHHHHHHHHHhhCC
Confidence 455666666666666666666666654333 11111110 01357899999999999999999999999998 78
Q ss_pred hhHHHHHHcCCHHHHHHHHccCCCHHHHHHHHHHHHHhhcC-chhHHHHHhcCccHHHHHhhcCCCCHHHHHHHHHHHH-
Q 006114 439 INQEKIVEEGGLDALLLLLRTSQNTTILRVASGAIANLAMN-EMNQGLIMSRGGGQLLAKTASKTDDPQTLRMVAGALA- 516 (660)
Q Consensus 439 en~~~Ive~GgI~~Lv~LL~~s~d~~v~~~Aa~AL~nLA~~-~~n~~~Ive~g~I~~Ll~LL~~s~d~~v~~~Aa~aLa- 516 (660)
.|.-. --|.+..+|.++.|-=+........++|+-- |-..+ ..+++|..++.+..-..+...+..++.
T Consensus 214 knyL~-----LAP~ffkllttSsNNWmLIKiiKLF~aLtplEPRLgK-----KLieplt~li~sT~AmSLlYECvNTVVa 283 (877)
T KOG1059|consen 214 QNYLQ-----LAPLFYKLLVTSSNNWVLIKLLKLFAALTPLEPRLGK-----KLIEPITELMESTVAMSLLYECVNTVVA 283 (877)
T ss_pred ccccc-----ccHHHHHHHhccCCCeehHHHHHHHhhccccCchhhh-----hhhhHHHHHHHhhHHHHHHHHHHHHhee
Confidence 66432 2477788888777766666677788888654 43222 357888888765333334443333222
Q ss_pred -HHhcChhHHHHHHhccHHHHHHHHhcCCCHHHHHHHHHHHHHhhccchhhhhhcchhhhHHHhhcChHHHHHHhhcCCC
Q 006114 517 -NLCGNEKLHTMLEEDGAIKALLAMVRSGNIDVIAQVARGLANFAKCESRAIVQGQRKGRSHLMEDSALEWLIANSKTNS 595 (660)
Q Consensus 517 -nLa~~~~~r~~iv~~G~V~~Lv~lL~s~~~~v~~~Al~aLanLA~~~~~~~aq~~~e~r~~Li~~G~v~~Lv~lL~s~d 595 (660)
+++..-..+...+. -++..|-.++.+.++++...++.+++-|+..+|..+.. --+.++++|.+.|
T Consensus 284 ~s~s~g~~d~~asiq-LCvqKLr~fiedsDqNLKYlgLlam~KI~ktHp~~Vqa-------------~kdlIlrcL~DkD 349 (877)
T KOG1059|consen 284 VSMSSGMSDHSASIQ-LCVQKLRIFIEDSDQNLKYLGLLAMSKILKTHPKAVQA-------------HKDLILRCLDDKD 349 (877)
T ss_pred ehhccCCCCcHHHHH-HHHHHHhhhhhcCCccHHHHHHHHHHHHhhhCHHHHHH-------------hHHHHHHHhccCC
Confidence 23211111111111 25666777778899999999999999998776643321 2345666777777
Q ss_pred HHHHHHHHHHHHHhhc
Q 006114 596 ASTRRHVELALCHLAQ 611 (660)
Q Consensus 596 ~~vr~~Aa~AL~nLa~ 611 (660)
+.+|..|.-.|.-+..
T Consensus 350 ~SIRlrALdLl~gmVs 365 (877)
T KOG1059|consen 350 ESIRLRALDLLYGMVS 365 (877)
T ss_pred chhHHHHHHHHHHHhh
Confidence 7777777666665543
No 93
>PF05536 Neurochondrin: Neurochondrin
Probab=97.31 E-value=0.0071 Score=69.68 Aligned_cols=161 Identities=14% Similarity=0.126 Sum_probs=116.0
Q ss_pred HHHHHhCCCHHHHHHhhCC-------CCHHHHHHHHHHHHHhhCCchhHHHHHHcCCHHHHHHHHccCCCHHHHHHHHHH
Q 006114 400 IAKICDEVGLPKILQLLTS-------EDPDVQIHAVKVVANLAAEDINQEKIVEEGGLDALLLLLRTSQNTTILRVASGA 472 (660)
Q Consensus 400 ~~~I~e~ggI~~LV~LL~s-------~d~~vr~~Aa~aL~nLa~~~en~~~Ive~GgI~~Lv~LL~~s~d~~v~~~Aa~A 472 (660)
.+.|++.-|.+.|-+||.+ +....+.-|+.+|..++..|+....---.+-||.|+.++..+.+..+...|..+
T Consensus 43 ~~~v~~aig~~Fl~RLL~t~~~~~~~~~~~~~~LavsvL~~f~~~~~~a~~~~~~~~IP~Lle~l~~~s~~~~v~dalqc 122 (543)
T PF05536_consen 43 RRRVFEAIGFKFLDRLLRTGSVPSDCPPEEYLSLAVSVLAAFCRDPELASSPQMVSRIPLLLEILSSSSDLETVDDALQC 122 (543)
T ss_pred HHHHHHhcChhHHHHHhcCCCCCCCCCHHHHHHHHHHHHHHHcCChhhhcCHHHHHHHHHHHHHHHcCCchhHHHHHHHH
Confidence 3458888888888899986 346788889999999999776653322223499999999866665788899999
Q ss_pred HHHhhcCchhHHHHHhcCccHHHHHhhcCCCCHHHHHHHHHHHHHHhcChhHHHHHHhc----cHHHHHHHHhcCCCHHH
Q 006114 473 IANLAMNEMNQGLIMSRGGGQLLAKTASKTDDPQTLRMVAGALANLCGNEKLHTMLEED----GAIKALLAMVRSGNIDV 548 (660)
Q Consensus 473 L~nLA~~~~n~~~Ive~g~I~~Ll~LL~~s~d~~v~~~Aa~aLanLa~~~~~r~~iv~~----G~V~~Lv~lL~s~~~~v 548 (660)
|..++.+|+++..++..|+|+.|+..+.+ .+.....|..++.+++........--.. ..++.|...+...+...
T Consensus 123 L~~Ias~~~G~~aLl~~g~v~~L~ei~~~--~~~~~E~Al~lL~~Lls~~~~~~~~~~~~~l~~il~~La~~fs~~~~~~ 200 (543)
T PF05536_consen 123 LLAIASSPEGAKALLESGAVPALCEIIPN--QSFQMEIALNLLLNLLSRLGQKSWAEDSQLLHSILPSLARDFSSFHGED 200 (543)
T ss_pred HHHHHcCcHhHHHHHhcCCHHHHHHHHHh--CcchHHHHHHHHHHHHHhcchhhhhhhHHHHHHHHHHHHHHHHhhccch
Confidence 99999999999999999999999999975 5677888888888887432211100111 23344444454555555
Q ss_pred HHHHHHHHHHhhcc
Q 006114 549 IAQVARGLANFAKC 562 (660)
Q Consensus 549 ~~~Al~aLanLA~~ 562 (660)
.-.++..|..|-..
T Consensus 201 kfell~~L~~~L~~ 214 (543)
T PF05536_consen 201 KFELLEFLSAFLPR 214 (543)
T ss_pred HHHHHHHHHHhcCc
Confidence 66667777766533
No 94
>KOG0977 consensus Nuclear envelope protein lamin, intermediate filament superfamily [Cell cycle control, cell division, chromosome partitioning; Nuclear structure]
Probab=97.31 E-value=0.099 Score=59.55 Aligned_cols=156 Identities=19% Similarity=0.198 Sum_probs=93.9
Q ss_pred hhHHHHHhhHHHHHHHHHHHHHHHHHhhhhc----hHHHHHHHHHHHhhHHHHHHhhhhhhhHHHHhhhhHHHHHHHHHh
Q 006114 56 ISYDEAKDNLVTQVELLTAKIEMQQKLREND----KYEFEKQLRESQISYDESMRNLVTRSEFLEKENAHLELEVEKILG 131 (660)
Q Consensus 56 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 131 (660)
.+|=+=-+.|++|=..|+..|..-+--..++ |.=||.+|..++.-.+++-+ .-.-++.+.+.|..|++++++
T Consensus 52 A~YIekVR~LEaqN~~L~~di~~lr~~~~~~ts~ik~~ye~El~~ar~~l~e~~~----~ra~~e~ei~kl~~e~~elr~ 127 (546)
T KOG0977|consen 52 AVYIEKVRFLEAQNRKLEHDINLLRGVVGRETSGIKAKYEAELATARKLLDETAR----ERAKLEIEITKLREELKELRK 127 (546)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhccCCCcchhHHhhhhHHHHHHHHHHHHH----HHHHHHHHHHHhHHHHHHHHH
Confidence 3455555566666666666665544433333 55677777777777777611 111234444555555555555
Q ss_pred hhhhhhhhhhhH-------HHHHHHHHHHhhhhhhhhhhhhhhHHHHHHhhHHHHHHHHHHHHHHHHHHhhhhchHHHHH
Q 006114 132 ELNHQKDQNNLK-------REKIVQLEISLKNSKQQQLDNSSYQKVLADTTQMYEKKITELIKQLEIEHARSEGAEEQVD 204 (660)
Q Consensus 132 ~~~~~~~~~~~~-------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~e~~~~~~~~~~~~ 204 (660)
.+.+.-..-.-- ...+.++|.++...+-.--...---+.+.+++.++..+|..++++|++|+..+...+-.++
T Consensus 128 ~~~~~~k~~~~~re~~~~~~~~l~~leAe~~~~krr~~~le~e~~~Lk~en~rl~~~l~~~r~~ld~Etllr~d~~n~~q 207 (546)
T KOG0977|consen 128 KLEKAEKERRGAREKLDDYLSRLSELEAEINTLKRRIKALEDELKRLKAENSRLREELARARKQLDDETLLRVDLQNRVQ 207 (546)
T ss_pred HHHHHHHHHhhhHHHHHHHhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHhHHH
Confidence 443331111111 2233344444444444333333344477888899999999999999999999999999999
Q ss_pred HHHHHHhhhhh
Q 006114 205 TMKKLISDNQK 215 (660)
Q Consensus 205 ~l~~~l~~~~~ 215 (660)
.|...|.-++.
T Consensus 208 ~Lleel~f~~~ 218 (546)
T KOG0977|consen 208 TLLEELAFLKR 218 (546)
T ss_pred HHHHHHHHHHh
Confidence 99888877763
No 95
>KOG1517 consensus Guanine nucleotide binding protein MIP1 [Cell cycle control, cell division, chromosome partitioning]
Probab=97.30 E-value=0.0085 Score=71.22 Aligned_cols=192 Identities=19% Similarity=0.120 Sum_probs=143.7
Q ss_pred HHHHHHhhCCCCHHHHHHHHHHHHHhhC-CchhHHHHHHcCCHHHHHHHHccCCCHHHHHHHHHHHH--HhhcCchhHHH
Q 006114 409 LPKILQLLTSEDPDVQIHAVKVVANLAA-EDINQEKIVEEGGLDALLLLLRTSQNTTILRVASGAIA--NLAMNEMNQGL 485 (660)
Q Consensus 409 I~~LV~LL~s~d~~vr~~Aa~aL~nLa~-~~en~~~Ive~GgI~~Lv~LL~~s~d~~v~~~Aa~AL~--nLA~~~~n~~~ 485 (660)
+|-+++.|-|... |..|+..|+.+-. .+--......-|..|.++.+|+ ++-.+++-. +..|| .||.++..+..
T Consensus 474 LPiVLQVLLSQvH--RlRAL~LL~RFLDlGpWAV~LaLsVGIFPYVLKLLQ-S~a~ELrpi-LVFIWAKILAvD~SCQ~d 549 (1387)
T KOG1517|consen 474 LPIVLQVLLSQVH--RLRALVLLARFLDLGPWAVDLALSVGIFPYVLKLLQ-SSARELRPI-LVFIWAKILAVDPSCQAD 549 (1387)
T ss_pred cchHHHHHHHHHH--HHHHHHHHHHHhccchhhhhhhhccchHHHHHHHhc-cchHhhhhh-HHHHHHHHHhcCchhHHH
Confidence 5555555544333 3345656655443 5655566667788999999998 666666553 33343 35677889999
Q ss_pred HHhcCccHHHHHhhcC--CCCHHHHHHHHHHHHHHh-cChhHHHHHHhccHHHHHHHHhcCC-CHHHHHHHHHHHHHhhc
Q 006114 486 IMSRGGGQLLAKTASK--TDDPQTLRMVAGALANLC-GNEKLHTMLEEDGAIKALLAMVRSG-NIDVIAQVARGLANFAK 561 (660)
Q Consensus 486 Ive~g~I~~Ll~LL~~--s~d~~v~~~Aa~aLanLa-~~~~~r~~iv~~G~V~~Lv~lL~s~-~~~v~~~Al~aLanLA~ 561 (660)
+++.+|-...+.+|.. +-+++-+.+|+.+|+.++ ..+-++....+.+.+...++.+.++ .+-++..+|-+|+.|=.
T Consensus 550 LvKe~g~~YF~~vL~~~~~~~~EqrtmaAFVLAviv~nf~lGQ~acl~~~li~iCle~lnd~~~pLLrQW~~icLG~LW~ 629 (1387)
T KOG1517|consen 550 LVKENGYKYFLQVLDPSQAIPPEQRTMAAFVLAVIVRNFKLGQKACLNGNLIGICLEHLNDDPEPLLRQWLCICLGRLWE 629 (1387)
T ss_pred HHhccCceeEEEEecCcCCCCHHHHHHHHHHHHHHHcccchhHHHhccccHHHHHHHHhcCCccHHHHHHHHHHHHHHhh
Confidence 9999998888888864 234678889999999998 5677778888888999888888874 78899999999999875
Q ss_pred cchhhhhhcchhhhHHHhhcChHHHHHHhhcCCCHHHHHHHHHHHHHhhcC
Q 006114 562 CESRAIVQGQRKGRSHLMEDSALEWLIANSKTNSASTRRHVELALCHLAQN 612 (660)
Q Consensus 562 ~~~~~~aq~~~e~r~~Li~~G~v~~Lv~lL~s~d~~vr~~Aa~AL~nLa~~ 612 (660)
+.+ +.|=.-+..++...|+.++.+..+.||.+|+.||+.+-.+
T Consensus 630 d~~--------~Arw~G~r~~AhekL~~~LsD~vpEVRaAAVFALgtfl~~ 672 (1387)
T KOG1517|consen 630 DYD--------EARWSGRRDNAHEKLILLLSDPVPEVRAAAVFALGTFLSN 672 (1387)
T ss_pred hcc--------hhhhccccccHHHHHHHHhcCccHHHHHHHHHHHHHHhcc
Confidence 543 2333345678899999999999999999999999998663
No 96
>KOG4413 consensus 26S proteasome regulatory complex, subunit PSMD5 [Posttranslational modification, protein turnover, chaperones]
Probab=97.26 E-value=0.033 Score=59.10 Aligned_cols=277 Identities=16% Similarity=0.118 Sum_probs=179.4
Q ss_pred hhhhhcccCCCccccccchhhh---hhc-----CchhHHHHHhCCCHHHHHHhhCCCCHHHHHHHHHHHHHhhCCchhHH
Q 006114 371 ISKGSSRFGAPMSLQKSNPSRE---LSG-----QRATIAKICDEVGLPKILQLLTSEDPDVQIHAVKVVANLAAEDINQE 442 (660)
Q Consensus 371 i~~l~~~L~~~~~~vr~~~~~~---laa-----~~~~~~~I~e~ggI~~LV~LL~s~d~~vr~~Aa~aL~nLa~~~en~~ 442 (660)
.+.+..||..++..++.-..+. +-. ..+.+.-++..+.++.++..+..+|.+|-..|...|..|+..+..-.
T Consensus 84 mpdLQrGLiaddasVKiLackqigcilEdcDtnaVseillvvNaeilklildcIggeddeVAkAAiesikrialfpaale 163 (524)
T KOG4413|consen 84 MPDLQRGLIADDASVKILACKQIGCILEDCDTNAVSEILLVVNAEILKLILDCIGGEDDEVAKAAIESIKRIALFPAALE 163 (524)
T ss_pred hHHHHhcccCCcchhhhhhHhhhhHHHhcCchhhHHHHHHHhhhhHHHHHHHHHcCCcHHHHHHHHHHHHHHHhcHHHHH
Confidence 3444455555555555444333 111 12234456678889999999999999999999999999999888888
Q ss_pred HHHHcCCHHHH--HHHHccCCCHHHHHHHHHHHHHhhc-CchhHHHHHhcCccHHHHHhhcCCCCHHHHHHHHHHHHHHh
Q 006114 443 KIVEEGGLDAL--LLLLRTSQNTTILRVASGAIANLAM-NEMNQGLIMSRGGGQLLAKTASKTDDPQTLRMVAGALANLC 519 (660)
Q Consensus 443 ~Ive~GgI~~L--v~LL~~s~d~~v~~~Aa~AL~nLA~-~~~n~~~Ive~g~I~~Ll~LL~~s~d~~v~~~Aa~aLanLa 519 (660)
.|....-.+.+ .++-. ..+.-++..+...+..|.. .|......-..|.+..|..-++...|.-|..++......|+
T Consensus 164 aiFeSellDdlhlrnlaa-kcndiaRvRVleLIieifSiSpesaneckkSGLldlLeaElkGteDtLVianciElvteLa 242 (524)
T KOG4413|consen 164 AIFESELLDDLHLRNLAA-KCNDIARVRVLELIIEIFSISPESANECKKSGLLDLLEAELKGTEDTLVIANCIELVTELA 242 (524)
T ss_pred HhcccccCChHHHhHHHh-hhhhHHHHHHHHHHHHHHhcCHHHHhHhhhhhHHHHHHHHhcCCcceeehhhHHHHHHHHH
Confidence 88876665554 33322 2234455566777766654 47777777788999999998887788888888889999999
Q ss_pred cChhHHHHHHhccHHHHHHHHhcC--CCHHHHHHHHHHHHHhhccchhhhhhcchhhhHHHhhcChHHHHHHhhcCCCHH
Q 006114 520 GNEKLHTMLEEDGAIKALLAMVRS--GNIDVIAQVARGLANFAKCESRAIVQGQRKGRSHLMEDSALEWLIANSKTNSAS 597 (660)
Q Consensus 520 ~~~~~r~~iv~~G~V~~Lv~lL~s--~~~~v~~~Al~aLanLA~~~~~~~aq~~~e~r~~Li~~G~v~~Lv~lL~s~d~~ 597 (660)
...-++..+...|.|..+.+++.. ++|--.-.+++..+.|-.... ............++ -+++-........|+.
T Consensus 243 eteHgreflaQeglIdlicnIIsGadsdPfekfralmgfgkffgkea-imdvseeaiceali--iaidgsfEmiEmnDpd 319 (524)
T KOG4413|consen 243 ETEHGREFLAQEGLIDLICNIISGADSDPFEKFRALMGFGKFFGKEA-IMDVSEEAICEALI--IAIDGSFEMIEMNDPD 319 (524)
T ss_pred HHhhhhhhcchhhHHHHHHHHhhCCCCCcHHHHHHHHHHHHHhcchH-HhhcCHHHHHHHHH--HHHHhhHHhhhcCCch
Confidence 888999999999999999999984 445444556666655432210 00000000111111 1233334455667889
Q ss_pred HHHHHHHHHHHhhcCCccHHHHHhcCc--HHHHHHHHhcCChHHHHHHHHHHHhcC
Q 006114 598 TRRHVELALCHLAQNEDNARDFISRGG--AKELVQISIESSREDIRNLAKKTMKSN 651 (660)
Q Consensus 598 vr~~Aa~AL~nLa~~~e~~~~Ive~G~--l~~Lv~lL~s~s~~~ir~~A~~~L~~~ 651 (660)
....|.-+|+.|+++.+.+..+.+.|- ...++.-.-+.+...-..++.+.|.+.
T Consensus 320 aieaAiDalGilGSnteGadlllkTgppaaehllarafdqnahakqeaaihaLaaI 375 (524)
T KOG4413|consen 320 AIEAAIDALGILGSNTEGADLLLKTGPPAAEHLLARAFDQNAHAKQEAAIHALAAI 375 (524)
T ss_pred HHHHHHHHHHhccCCcchhHHHhccCChHHHHHHHHHhcccccchHHHHHHHHHHh
Confidence 999999999999999988888777764 223332222222222444555555443
No 97
>KOG2023 consensus Nuclear transport receptor Karyopherin-beta2/Transportin (importin beta superfamily) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=97.26 E-value=0.0041 Score=70.88 Aligned_cols=169 Identities=16% Similarity=0.156 Sum_probs=112.8
Q ss_pred chhhhhhcccCCCccccccchhhhhhcCchhHHHHHhC--------CCHHHHHHhhCCCCHHHHHHHHHHHHHhhCCchh
Q 006114 369 DYISKGSSRFGAPMSLQKSNPSRELSGQRATIAKICDE--------VGLPKILQLLTSEDPDVQIHAVKVVANLAAEDIN 440 (660)
Q Consensus 369 g~i~~l~~~L~~~~~~vr~~~~~~laa~~~~~~~I~e~--------ggI~~LV~LL~s~d~~vr~~Aa~aL~nLa~~~en 440 (660)
..++.+...|++++.-..+.++.++..-....+.+++. --+|+++.+.+++++.+|..|++.+-.+.... +
T Consensus 128 elLp~L~~~L~s~d~n~~EgA~~AL~KIcEDsa~~lds~~~~rpl~~mipkfl~f~~h~spkiRs~A~~cvNq~i~~~-~ 206 (885)
T KOG2023|consen 128 ELLPQLCELLDSPDYNTCEGAFGALQKICEDSAQFLDSDVLTRPLNIMIPKFLQFFKHPSPKIRSHAVGCVNQFIIIQ-T 206 (885)
T ss_pred hHHHHHHHHhcCCcccccchhHHHHHHHHhhhHHHHhhhcccCchHHhHHHHHHHHhCCChhHHHHHHhhhhheeecC-c
Confidence 45677777888887777777777643333333334433 24899999999999999999999886544322 1
Q ss_pred HHHHHHcC-CHHHHHHHHccCCCHHHHHHHHHHHHHhhcCchhHHHHHh--cCccHHHHHhhcCCCCHHHHHHHHHHHHH
Q 006114 441 QEKIVEEG-GLDALLLLLRTSQNTTILRVASGAIANLAMNEMNQGLIMS--RGGGQLLAKTASKTDDPQTLRMVAGALAN 517 (660)
Q Consensus 441 ~~~Ive~G-gI~~Lv~LL~~s~d~~v~~~Aa~AL~nLA~~~~n~~~Ive--~g~I~~Ll~LL~~s~d~~v~~~Aa~aLan 517 (660)
+..+..-+ .+..|..+-+ +++++||.+.|.++.-|..... +.++- .++|..++..-.+ .|..|...||.....
T Consensus 207 qal~~~iD~Fle~lFalan-D~~~eVRk~vC~alv~Llevr~--dkl~phl~~IveyML~~tqd-~dE~VALEACEFwla 282 (885)
T KOG2023|consen 207 QALYVHIDKFLEILFALAN-DEDPEVRKNVCRALVFLLEVRP--DKLVPHLDNIVEYMLQRTQD-VDENVALEACEFWLA 282 (885)
T ss_pred HHHHHHHHHHHHHHHHHcc-CCCHHHHHHHHHHHHHHHHhcH--HhcccchHHHHHHHHHHccC-cchhHHHHHHHHHHH
Confidence 22232222 3666666664 8999999999999998865421 12322 5667777777765 677899999988888
Q ss_pred HhcChhHHHHHHh--ccHHHHHHHHhc
Q 006114 518 LCGNEKLHTMLEE--DGAIKALLAMVR 542 (660)
Q Consensus 518 La~~~~~r~~iv~--~G~V~~Lv~lL~ 542 (660)
+|..|-.+..+.. ...||.|++-|.
T Consensus 283 ~aeqpi~~~~L~p~l~kliPvLl~~M~ 309 (885)
T KOG2023|consen 283 LAEQPICKEVLQPYLDKLIPVLLSGMV 309 (885)
T ss_pred HhcCcCcHHHHHHHHHHHHHHHHccCc
Confidence 8877744444443 267777776543
No 98
>PF01576 Myosin_tail_1: Myosin tail; InterPro: IPR002928 Muscle contraction is caused by sliding between the thick and thin filaments of the myofibril. Myosin is a major component of thick filaments and exists as a hexamer of 2 heavy chains [], 2 alkali light chains, and 2 regulatory light chains. The heavy chain can be subdivided into the N-terminal globular head and the C-terminal coiled-coil rod-like tail, although some forms have a globular region in their C-terminal. There are many cell-specific isoforms of myosin heavy chains, coded for by a multi-gene family []. Myosin interacts with actin to convert chemical energy, in the form of ATP, to mechanical energy []. The 3-D structure of the head portion of myosin has been determined [] and a model for actin-myosin complex has been constructed []. This family consists of the coiled-coil myosin heavy chain tail region. The coiled-coil is composed of the tail from two molecules of myosin. These can then assemble into the macromolecular thick filament []. The coiled-coil region provides the structural backbone of the thick filament [].; GO: 0003774 motor activity, 0016459 myosin complex; PDB: 2LNK_C 3ZWH_Q.
Probab=97.24 E-value=7e-05 Score=90.30 Aligned_cols=299 Identities=22% Similarity=0.288 Sum_probs=0.0
Q ss_pred chHHHHHHHHHHHHHhhHHHHHHhhhhhhhHHHHHHHHHHHHhhH----HHHHhhHHHHHHHHHHHHHHHHHhhh---hc
Q 006114 14 DYESLCRKLETQVDHLTAEIERKQKLRENDKCELEKLLRECQISY----DEAKDNLVTQVELLTAKIEMQQKLRE---ND 86 (660)
Q Consensus 14 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~---~~ 86 (660)
+++.|..+||...+.-.+-++-.. -+|.+-..+.+.+.+....+ +++.++-..+|..|+..|+--+|.+. .+
T Consensus 75 ELe~l~~~Lee~~~~t~aq~E~~k-krE~El~~Lrr~LEe~~~~~e~~~~~lrkkh~~~~~eL~eqle~lqk~k~~lEK~ 153 (859)
T PF01576_consen 75 ELEELKERLEEAGGATQAQIELNK-KREAELAKLRRDLEEANLQHEATLAELRKKHQDAVAELNEQLEQLQKQKAKLEKE 153 (859)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HHHHHHHHHHHhhCcHHhhHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 466777777777776554333322 35566666666666655544 44555555666666666665555421 22
Q ss_pred hHHHHHHHHHHHhhHHHH-----------------HHhhhhhhh-------HHHHhhhhHHHHHHHHHhhhhhhhhhhhh
Q 006114 87 KYEFEKQLRESQISYDES-----------------MRNLVTRSE-------FLEKENAHLELEVEKILGELNHQKDQNNL 142 (660)
Q Consensus 87 ~~~~e~~~~~~~~~~~~~-----------------~~~~~~~~~-------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 142 (660)
|..|+.++.......+.. +..+..+++ -+...+.+|..|+..|...+...-...+.
T Consensus 154 k~~l~~e~~dL~~~l~~~~k~k~~~Ek~~K~lE~qL~El~~klee~er~~~el~~~k~kL~~E~~eL~~qLee~e~~~~~ 233 (859)
T PF01576_consen 154 KSQLEAELDDLQAQLDSLQKAKQEAEKKRKQLEAQLNELQAKLEESERQRNELTEQKAKLQSENSELTRQLEEAESQLSQ 233 (859)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HHHHHhHHHHHHHHHHHHHHHHHHHHhHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333333333333322211 111111111 45566777888888888888777777777
Q ss_pred HHHHHHHHHHHhhhhhhhhhhhhhhHHHHHHhhHHHHHHHHHHHHHHHHHHhhhhchHHHHHHHHHHHhhhhhhHHHHhh
Q 006114 143 KREKIVQLEISLKNSKQQQLDNSSYQKVLADTTQMYEKKITELIKQLEIEHARSEGAEEQVDTMKKLISDNQKSIEQYEM 222 (660)
Q Consensus 143 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~e~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~ 222 (660)
+...+.+|+..|..++...-+....-..|....+.++.++..|..+++++......++.++..+...+.+|++... .
T Consensus 234 l~r~k~~L~~qLeelk~~leeEtr~k~~L~~~l~~le~e~~~L~eqleeE~e~k~~l~~qlsk~~~El~~~k~K~e---~ 310 (859)
T PF01576_consen 234 LQREKSSLESQLEELKRQLEEETRAKQALEKQLRQLEHELEQLREQLEEEEEAKSELERQLSKLNAELEQWKKKYE---E 310 (859)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HHHHHHHHHHHHHhhHHHHHhHhhhhhhhHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHhhHHHHHHHHHH---H
Confidence 7777888888888777555555444448888999999999999999999999999999999999999999986443 5
Q ss_pred hhhHHHHHHhhHHHHHHHHHHHHhhhhhhhhhhhhhhHHhHHHHHHHhhhhh-------cc--------ccchhHHHHHH
Q 006114 223 ENSTYQKALADTTQLYEKKIAELNKKLEDEHACFEGAVEQLDMVKKLLSDYQ-------NS--------NQGQKEVHELC 287 (660)
Q Consensus 223 ~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------~~--------~~~~~e~~~Lk 287 (660)
+...-...|-++..-+.++|.++..++++-.+.+..++..-.-+..=+.|.+ .. ..-...+.+++
T Consensus 311 e~~~~~EelEeaKKkL~~~L~el~e~le~~~~~~~~LeK~k~rL~~EleDl~~eLe~~~~~~~~LeKKqr~fDk~l~e~k 390 (859)
T PF01576_consen 311 EAEQRTEELEEAKKKLERKLQELQEQLEEANAKVSSLEKTKKRLQGELEDLTSELEKAQAAAAELEKKQRKFDKQLAEWK 390 (859)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHH
Confidence 4455556677777788899999999999988888877654333322222221 11 11123334555
Q ss_pred HHHHHHHHHHHhHHHHHHHHHHHHHHHHH
Q 006114 288 VKLKETRQLHESAVYEVQTLKSEYKNLLE 316 (660)
Q Consensus 288 ~~Le~e~~~~e~~e~E~~~lks~l~~l~~ 316 (660)
..+......+.++..+...+..++..+..
T Consensus 391 ~~~~~~~~e~d~~q~e~r~~~te~~~Lk~ 419 (859)
T PF01576_consen 391 AKVEELQAERDAAQREARELETELFKLKN 419 (859)
T ss_dssp -----------------------------
T ss_pred HHHHHHHHHHHHHHHHhHHHHHHHHHHHh
Confidence 55555555555555555555444444433
No 99
>KOG1789 consensus Endocytosis protein RME-8, contains DnaJ domain [Intracellular trafficking, secretion, and vesicular transport; Posttranslational modification, protein turnover, chaperones]
Probab=97.19 E-value=0.012 Score=69.80 Aligned_cols=232 Identities=16% Similarity=0.195 Sum_probs=147.5
Q ss_pred hhcCchhHHHHHhCCCHHHHHHhhCCCCHHHHHHHHHHHHHhhCCchhHHHHHHcCCHHHHHHHHccCCCHHHHHHHHHH
Q 006114 393 LSGQRATIAKICDEVGLPKILQLLTSEDPDVQIHAVKVVANLAAEDINQEKIVEEGGLDALLLLLRTSQNTTILRVASGA 472 (660)
Q Consensus 393 laa~~~~~~~I~e~ggI~~LV~LL~s~d~~vr~~Aa~aL~nLa~~~en~~~Ive~GgI~~Lv~LL~~s~d~~v~~~Aa~A 472 (660)
+.++.+....++..|.+..|+.+|.|. +..|..++.+|..|+.++.......+.||+..+..++..+..+..+..|+..
T Consensus 1799 ~Tan~~Cv~~~a~~~vL~~LL~lLHS~-PS~R~~vL~vLYAL~S~~~i~keA~~hg~l~yil~~~c~~~~~QqRAqaAeL 1877 (2235)
T KOG1789|consen 1799 ATANKECVTDLATCNVLTTLLTLLHSQ-PSMRARVLDVLYALSSNGQIGKEALEHGGLMYILSILCLTNSDQQRAQAAEL 1877 (2235)
T ss_pred HhcccHHHHHHHhhhHHHHHHHHHhcC-hHHHHHHHHHHHHHhcCcHHHHHHHhcCchhhhhHHHhccCcHHHHHHHHHH
Confidence 456667778888889888888888664 5578889999999999999999999999999999999888889999999999
Q ss_pred HHHhhcCc----hhHHHHHh----------cCccHHHHHhhcC-CCCH------HHHHHHHHHHHHH-------------
Q 006114 473 IANLAMNE----MNQGLIMS----------RGGGQLLAKTASK-TDDP------QTLRMVAGALANL------------- 518 (660)
Q Consensus 473 L~nLA~~~----~n~~~Ive----------~g~I~~Ll~LL~~-s~d~------~v~~~Aa~aLanL------------- 518 (660)
++.+..++ ..+-.++. .++=.+.+.++.. +.+| ..+....+.+..+
T Consensus 1878 laKl~Adkl~GPrV~ITL~kFLP~~f~d~~RD~PEAaVH~fE~T~EnPELiWn~~~r~kvS~~i~tM~~~~y~~QQk~p~ 1957 (2235)
T KOG1789|consen 1878 LAKLQADKLTGPRVTITLIKFLPEIFADSLRDSPEAAVHMFESTSENPELIWNEVTRQKVSGIIDTMVGKLYEQQQKDPT 1957 (2235)
T ss_pred HHHhhhccccCCceeeehHHhchHHHHHHHhcCHHHHHHHHhccCCCcccccCHhHHHHHHHHHHHHHHHHHHHhccCCc
Confidence 99987652 21111111 0000222222211 0111 1111222222222
Q ss_pred ----------------------------------------------------------------------------hcCh
Q 006114 519 ----------------------------------------------------------------------------CGNE 522 (660)
Q Consensus 519 ----------------------------------------------------------------------------a~~~ 522 (660)
...|
T Consensus 1958 ~~W~~PEqsAg~~Ea~~E~aVGG~~~R~Fi~~P~f~LR~Pk~FL~~LLek~lelm~~~~peqh~l~lLt~A~V~L~r~hP 2037 (2235)
T KOG1789|consen 1958 VKWNTPEQSAGTSEADKECAVGGSINREFVVGPGFNLRHPKLFLTELLEKVLELMSRPTPEQHELDLLTKAFVELVRHHP 2037 (2235)
T ss_pred ccccCchhhcchhhhccCcccchhhhHHHhhCCCCcccCHHHHHHHHHHHHHHHhcCCCcccchhHHHHHHHHHHHHhCc
Confidence 2344
Q ss_pred hHHHHHHhccHHHHHHHHhcCCCHHHHHHHHHHHHHhhccchhhhhhcchhhhHHHhhcChHHHHHHhhcCCCHHHHHHH
Q 006114 523 KLHTMLEEDGAIKALLAMVRSGNIDVIAQVARGLANFAKCESRAIVQGQRKGRSHLMEDSALEWLIANSKTNSASTRRHV 602 (660)
Q Consensus 523 ~~r~~iv~~G~V~~Lv~lL~s~~~~v~~~Al~aLanLA~~~~~~~aq~~~e~r~~Li~~G~v~~Lv~lL~s~d~~vr~~A 602 (660)
.....+-..|.+|.++..+...+..+-..|+++|..|+... ....++..-.++..+++.+..... .--.|
T Consensus 2038 ~LADqip~LGylPK~~~Am~~~n~s~P~SaiRVlH~Lsen~---------~C~~AMA~l~~i~~~m~~mkK~~~-~~GLA 2107 (2235)
T KOG1789|consen 2038 NLADQLPSLGYLPKFCTAMCLQNTSAPRSAIRVLHELSENQ---------FCCDAMAQLPCIDGIMKSMKKQPS-LMGLA 2107 (2235)
T ss_pred chhhhCCCccchHHHHHHHHhcCCcCcHHHHHHHHHHhhcc---------HHHHHHhccccchhhHHHHHhcch-HHHHH
Confidence 44444445556666665555444444466777777776432 233445555556667777664433 33477
Q ss_pred HHHHHHhhcCC--ccHHHHHhcCcHHHHHHHHhcC
Q 006114 603 ELALCHLAQNE--DNARDFISRGGAKELVQISIES 635 (660)
Q Consensus 603 a~AL~nLa~~~--e~~~~Ive~G~l~~Lv~lL~s~ 635 (660)
+.+|-.+.... +......+.|.+|-|+.++.+.
T Consensus 2108 ~EalkR~~~r~~~eLVAQ~LK~gLvpyLL~LLd~~ 2142 (2235)
T KOG1789|consen 2108 AEALKRLMKRNTGELVAQMLKCGLVPYLLQLLDSS 2142 (2235)
T ss_pred HHHHHHHHHHhHHHHHHHHhccCcHHHHHHHhccc
Confidence 88888876633 5567777899999999999754
No 100
>KOG0999 consensus Microtubule-associated protein Bicaudal-D [Intracellular trafficking, secretion, and vesicular transport]
Probab=97.18 E-value=0.28 Score=55.10 Aligned_cols=156 Identities=22% Similarity=0.256 Sum_probs=77.8
Q ss_pred hhhhhhHHHHHHHHHHHhhhhhhhhhhhhhhHHHHHHhhHHHHHHHHHHHHHHHHHHhhhhchHHHHHHHHHHHhhhhhh
Q 006114 137 KDQNNLKREKIVQLEISLKNSKQQQLDNSSYQKVLADTTQMYEKKITELIKQLEIEHARSEGAEEQVDTMKKLISDNQKS 216 (660)
Q Consensus 137 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~e~~~~~~~~~~~~~l~~~l~~~~~~ 216 (660)
.+.....-.++-.||.+||+..+- +.| ..-++-+++++-.+++-.-.+--..|-.|.+++...|-.-.-+=..
T Consensus 99 aakE~~yl~kI~eleneLKq~r~e-l~~------~q~E~erl~~~~sd~~e~~~~~E~qR~rlr~elKe~KfRE~Rllse 171 (772)
T KOG0999|consen 99 AAKEEYYLQKILELENELKQLRQE-LTN------VQEENERLEKVHSDLKESNAAVEDQRRRLRDELKEYKFREARLLSE 171 (772)
T ss_pred HHhHHHHHHHHHHHHHHHHHHHHH-HHH------HHHHHHHHHHHHHHhhhcchhhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333444455666666666665432 111 1122333344433333332222333344555555555322222222
Q ss_pred HHHHhhhhhHHHHHHhhHHHHHHHHHHHHhhhhhhhhhhhhhhHHhHHHHHHHhhhhhccccchhHHHHHHHHHHHHHHH
Q 006114 217 IEQYEMENSTYQKALADTTQLYEKKIAELNKKLEDEHACFEGAVEQLDMVKKLLSDYQNSNQGQKEVHELCVKLKETRQL 296 (660)
Q Consensus 217 ~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~Lk~~Le~e~~~ 296 (660)
....+-||.++||+.+ .+.+..-| ++-..+.
T Consensus 172 YSELEEENIsLQKqVs------------------------------------------~LR~sQVE-------yEglkhe 202 (772)
T KOG0999|consen 172 YSELEEENISLQKQVS------------------------------------------NLRQSQVE-------YEGLKHE 202 (772)
T ss_pred HHHHHHhcchHHHHHH------------------------------------------HHhhhhhh-------hhHHHHH
Confidence 2266788888888888 33333322 3444455
Q ss_pred HHhHHHHHHHHHHHHHHHHHhhhhccHHHHHHHHHHHHHHHHhhhhHHHHHH
Q 006114 297 HESAVYEVQTLKSEYKNLLEEKETMSDELQAARQRLLVEEKQRKAIEYELVK 348 (660)
Q Consensus 297 ~e~~e~E~~~lks~l~~l~~~~~~~~eel~~~~k~l~~e~~~rkkLe~E~~~ 348 (660)
...+++|+-.|.+++.+...-+...+-.+......++.|--++..+.-|+..
T Consensus 203 ikRleEe~elln~q~ee~~~Lk~IAekQlEEALeTlq~EReqk~alkkEL~q 254 (772)
T KOG0999|consen 203 IKRLEEETELLNSQLEEAIRLKEIAEKQLEEALETLQQEREQKNALKKELSQ 254 (772)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHH
Confidence 6667777777777766555444444444444444455555555555555554
No 101
>KOG0250 consensus DNA repair protein RAD18 (SMC family protein) [Replication, recombination and repair]
Probab=97.18 E-value=0.03 Score=67.36 Aligned_cols=16 Identities=25% Similarity=0.324 Sum_probs=10.8
Q ss_pred cHHHHHhhcCCCCHHHH
Q 006114 492 GQLLAKTASKTDDPQTL 508 (660)
Q Consensus 492 I~~Ll~LL~~s~d~~v~ 508 (660)
.|.++..|. ..||.|.
T Consensus 572 ~pTil~~le-~ddp~V~ 587 (1074)
T KOG0250|consen 572 FPTILDALE-FDDPEVL 587 (1074)
T ss_pred CCceeeeee-cCChHHH
Confidence 577777775 4677665
No 102
>PF14664 RICTOR_N: Rapamycin-insensitive companion of mTOR, N-term
Probab=97.12 E-value=0.017 Score=63.44 Aligned_cols=183 Identities=10% Similarity=0.033 Sum_probs=134.0
Q ss_pred CchhHHHHHHcCCHHHHHHHHccCCCHHHHHHHHHHHHHhhcCchhHHHHHhcCccHHHHHhhcC-CCCHHHHHHHHHHH
Q 006114 437 EDINQEKIVEEGGLDALLLLLRTSQNTTILRVASGAIANLAMNEMNQGLIMSRGGGQLLAKTASK-TDDPQTLRMVAGAL 515 (660)
Q Consensus 437 ~~en~~~Ive~GgI~~Lv~LL~~s~d~~v~~~Aa~AL~nLA~~~~n~~~Ive~g~I~~Ll~LL~~-s~d~~v~~~Aa~aL 515 (660)
+|..+..+.-...++.+..++- +++..|+..+.++++.+..++..-..+...++--.++..|.. ..+..=+..|...+
T Consensus 14 ~p~l~~~~~~~~~~~~i~~~lL-~~~~~vraa~yRilRy~i~d~~~l~~~~~l~id~~ii~SL~~~~~~~~ER~QALkli 92 (371)
T PF14664_consen 14 HPTLKYDLVLSFFGERIQCMLL-SDSKEVRAAGYRILRYLISDEESLQILLKLHIDIFIIRSLDRDNKNDVEREQALKLI 92 (371)
T ss_pred CchhhhhhhHHHHHHHHHHHHC-CCcHHHHHHHHHHHHHHHcCHHHHHHHHHcCCchhhHhhhcccCCChHHHHHHHHHH
Confidence 4544444443334555554444 345999999999999999998888888887765556665543 23444577888888
Q ss_pred HHHhcChhHHHHHHhccHHHHHHHHhcCCCHHHHHHHHHHHHHhhccchhhhhhcchhhhHHHhhcChHHHHHHhhcCCC
Q 006114 516 ANLCGNEKLHTMLEEDGAIKALLAMVRSGNIDVIAQVARGLANFAKCESRAIVQGQRKGRSHLMEDSALEWLIANSKTNS 595 (660)
Q Consensus 516 anLa~~~~~r~~iv~~G~V~~Lv~lL~s~~~~v~~~Al~aLanLA~~~~~~~aq~~~e~r~~Li~~G~v~~Lv~lL~s~d 595 (660)
+.+...+.+... +..|++..++.+....+...+..|+.+|+.++..+|+ .+...||+.+|+..+.++.
T Consensus 93 R~~l~~~~~~~~-~~~~vvralvaiae~~~D~lr~~cletL~El~l~~P~-----------lv~~~gG~~~L~~~l~d~~ 160 (371)
T PF14664_consen 93 RAFLEIKKGPKE-IPRGVVRALVAIAEHEDDRLRRICLETLCELALLNPE-----------LVAECGGIRVLLRALIDGS 160 (371)
T ss_pred HHHHHhcCCccc-CCHHHHHHHHHHHhCCchHHHHHHHHHHHHHHhhCHH-----------HHHHcCCHHHHHHHHHhcc
Confidence 888754333222 3668999999999999999999999999999988774 4567899999999998876
Q ss_pred HHHHHHHHHHHHHhhcCCccHHHHHhcCcHHHHHHHH
Q 006114 596 ASTRRHVELALCHLAQNEDNARDFISRGGAKELVQIS 632 (660)
Q Consensus 596 ~~vr~~Aa~AL~nLa~~~e~~~~Ive~G~l~~Lv~lL 632 (660)
..+....+.++.++-.++..+..+.-.--+..+....
T Consensus 161 ~~~~~~l~~~lL~lLd~p~tR~yl~~~~dL~~l~apf 197 (371)
T PF14664_consen 161 FSISESLLDTLLYLLDSPRTRKYLRPGFDLESLLAPF 197 (371)
T ss_pred HhHHHHHHHHHHHHhCCcchhhhhcCCccHHHHHHhh
Confidence 6788889999999998888877766544444444333
No 103
>PRK03918 chromosome segregation protein; Provisional
Probab=97.10 E-value=1.2 Score=54.24 Aligned_cols=30 Identities=30% Similarity=0.465 Sum_probs=17.9
Q ss_pred HHHHHHHHhhhhhhhhhhhhhhHHhHHHHH
Q 006114 238 YEKKIAELNKKLEDEHACFEGAVEQLDMVK 267 (660)
Q Consensus 238 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 267 (660)
|++++.++.+++.+...+.+..+.+|..+.
T Consensus 554 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~ 583 (880)
T PRK03918 554 LKKKLAELEKKLDELEEELAELLKELEELG 583 (880)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhhc
Confidence 556666666666666666666665555443
No 104
>KOG0250 consensus DNA repair protein RAD18 (SMC family protein) [Replication, recombination and repair]
Probab=97.08 E-value=1.2 Score=54.11 Aligned_cols=13 Identities=31% Similarity=0.324 Sum_probs=7.0
Q ss_pred HHHHHHhhHHHHH
Q 006114 50 LLRECQISYDEAK 62 (660)
Q Consensus 50 ~~~~~~~~~~~~~ 62 (660)
+|+.+..+|.+..
T Consensus 208 ~L~qi~~~~~~~~ 220 (1074)
T KOG0250|consen 208 QLEQITESYSEIM 220 (1074)
T ss_pred HHHHHHHHHHHHH
Confidence 5556666664433
No 105
>TIGR00606 rad50 rad50. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=97.08 E-value=1.7 Score=55.56 Aligned_cols=54 Identities=7% Similarity=0.085 Sum_probs=25.1
Q ss_pred HHhHHHHHHHhhhhhccccchhHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHH
Q 006114 260 VEQLDMVKKLLSDYQNSNQGQKEVHELCVKLKETRQLHESAVYEVQTLKSEYKNL 314 (660)
Q Consensus 260 ~~~~~~~~~~~~~~~~~~~~~~e~~~Lk~~Le~e~~~~e~~e~E~~~lks~l~~l 314 (660)
.++|..+.+-+.+|-... ....+.+++..+.......+.++.++..+..++..+
T Consensus 950 ~~~~~~~~~~i~~y~~~~-~~~qL~~~e~el~~~~~~ie~le~e~~~l~~~i~~l 1003 (1311)
T TIGR00606 950 VKNIHGYMKDIENKIQDG-KDDYLKQKETELNTVNAQLEECEKHQEKINEDMRLM 1003 (1311)
T ss_pred HHHHHHHHHHHHHHHHcC-CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334444444444443333 234455555555555444455554544444444443
No 106
>KOG0612 consensus Rho-associated, coiled-coil containing protein kinase [Signal transduction mechanisms]
Probab=97.07 E-value=1.4 Score=54.19 Aligned_cols=157 Identities=21% Similarity=0.216 Sum_probs=84.0
Q ss_pred HHHHhhhhhhhhhhhhhhHHHHHHhhHHHHHHHHHHHHHHHHHHhhhhchHHHHHH---------HHHHHhhhhhhHHHH
Q 006114 150 LEISLKNSKQQQLDNSSYQKVLADTTQMYEKKITELIKQLEIEHARSEGAEEQVDT---------MKKLISDNQKSIEQY 220 (660)
Q Consensus 150 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~e~~~~~~~~~~~~~---------l~~~l~~~~~~~~~~ 220 (660)
+-+++.....++.+-+.-...+..++..++.......+.+.+-...+....+..+. ++..+.-+++..+
T Consensus 607 ~~~~~e~~~~~~~~~~e~~~~l~~~i~sL~~~~~~~~~~l~k~~el~r~~~e~~~~~ek~~~e~~~e~~lk~~q~~~e-- 684 (1317)
T KOG0612|consen 607 LRSELEKERRQRTEISEIIAELKEEISSLEETLKAGKKELLKVEELKRENQERISDSEKEALEIKLERKLKMLQNELE-- 684 (1317)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--
Confidence 33334444444444444444566666666655555555444433333332222222 3334444443333
Q ss_pred hhhhhHHHHH-HhhHHHHHHHHHHHHhhhhhhhhhhhhhhHHhHHHHHHHhh-------hhh-c-------cccchhHHH
Q 006114 221 EMENSTYQKA-LADTTQLYEKKIAELNKKLEDEHACFEGAVEQLDMVKKLLS-------DYQ-N-------SNQGQKEVH 284 (660)
Q Consensus 221 ~~~~~~~~~~-l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------~~~-~-------~~~~~~e~~ 284 (660)
.+|+..... |.+- |-.++|+.+.|-+|.+-.+-|+.-+..+...++ -.| + ..+...++.
T Consensus 685 -q~~~E~~~~~L~~~----e~~~~e~~~~lseek~ar~k~e~~~~~i~~e~e~L~~d~~~~~~~~~~l~r~~~~~~~~vl 759 (1317)
T KOG0612|consen 685 -QENAEHHRLRLQDK----EAQMKEIESKLSEEKSAREKAENLLLEIEAELEYLSNDYKQSQEKLNELRRSKDQLITEVL 759 (1317)
T ss_pred -HHHHHHHHHHHhhH----HHHHHHHHHHhcccccHHHHHHHHHHHHHHHHHHHhhhhhhhccchhhhhhhHHHHHHHHH
Confidence 444444433 2222 788999999999988777665554444433322 222 1 112334567
Q ss_pred HHHHHHHHHHHHHHhHHHHHHHHHHHHHHH
Q 006114 285 ELCVKLKETRQLHESAVYEVQTLKSEYKNL 314 (660)
Q Consensus 285 ~Lk~~Le~e~~~~e~~e~E~~~lks~l~~l 314 (660)
.|.-+||.+.+.+-+...|+. .|++....
T Consensus 760 ~Lq~~LEqe~~~r~~~~~eLs-sq~~~~~t 788 (1317)
T KOG0612|consen 760 KLQSMLEQEISKRLSLQRELK-SQEQEVNT 788 (1317)
T ss_pred HHHHHHHHHHHHhhhhHHHhh-hHHHhhcc
Confidence 888888998888888887777 55555443
No 107
>smart00185 ARM Armadillo/beta-catenin-like repeats. Approx. 40 amino acid repeat. Tandem repeats form superhelix of helices that is proposed to mediate interaction of beta-catenin with its ligands. Involved in transducing the Wingless/Wnt signal. In plakoglobin arm repeats bind alpha-catenin and N-cadherin.
Probab=97.06 E-value=0.0014 Score=47.69 Aligned_cols=40 Identities=35% Similarity=0.602 Sum_probs=35.9
Q ss_pred chhHHHHHHcCCHHHHHHHHccCCCHHHHHHHHHHHHHhhc
Q 006114 438 DINQEKIVEEGGLDALLLLLRTSQNTTILRVASGAIANLAM 478 (660)
Q Consensus 438 ~en~~~Ive~GgI~~Lv~LL~~s~d~~v~~~Aa~AL~nLA~ 478 (660)
++++..+++.||+++|+.+|. ++++.++..|+++|+||+.
T Consensus 2 ~~~~~~i~~~g~i~~L~~ll~-~~~~~i~~~a~~aL~nl~~ 41 (41)
T smart00185 2 DEQKQAVVDAGGLPALVELLK-SEDEEVVKEAAWALSNLSS 41 (41)
T ss_pred cHHHHHHHHCCCHHHHHHHHc-CCCHHHHHHHHHHHHHHcC
Confidence 457888999999999999998 7799999999999999963
No 108
>KOG2734 consensus Uncharacterized conserved protein [Function unknown]
Probab=97.04 E-value=0.12 Score=57.00 Aligned_cols=230 Identities=15% Similarity=0.177 Sum_probs=156.4
Q ss_pred hhcCchhHHHHHhCCCHHHHHHhhCCCCHHHHHHHHHHHHHhhCC------chh----HHHHHHcCCHHHHHHHHccCCC
Q 006114 393 LSGQRATIAKICDEVGLPKILQLLTSEDPDVQIHAVKVVANLAAE------DIN----QEKIVEEGGLDALLLLLRTSQN 462 (660)
Q Consensus 393 laa~~~~~~~I~e~ggI~~LV~LL~s~d~~vr~~Aa~aL~nLa~~------~en----~~~Ive~GgI~~Lv~LL~~s~d 462 (660)
+|....-..-+++-.+++.|+.+|.+++.++-...+..|..|+.. .+. ....++.+.++.|+..+.. -|
T Consensus 111 lAt~PdLYp~lveln~V~slL~LLgHeNtDI~iavvdLLqELTD~Dv~~es~egAevLidaLvdg~vlaLLvqnveR-Ld 189 (536)
T KOG2734|consen 111 LATMPDLYPILVELNAVQSLLELLGHENTDIAIAVVDLLQELTDEDVLYESEEGAEVLIDALVDGQVLALLVQNVER-LD 189 (536)
T ss_pred hhcChHHHHHHHHhccHHHHHHHhcCCCchhHHHHHHHHHHhhhhcccccccccHHHHHHHHHhccHHHHHHHHHHH-hh
Confidence 566666666788999999999999999999999999999988862 222 3445566778888887752 22
Q ss_pred HH------HHHHHHHHHHHhhcC-chhHHHHHhcCccHHHHHhhcCC-CCHHHHHHHHHHHHHHh-cChhHHHHHHhccH
Q 006114 463 TT------ILRVASGAIANLAMN-EMNQGLIMSRGGGQLLAKTASKT-DDPQTLRMVAGALANLC-GNEKLHTMLEEDGA 533 (660)
Q Consensus 463 ~~------v~~~Aa~AL~nLA~~-~~n~~~Ive~g~I~~Ll~LL~~s-~d~~v~~~Aa~aLanLa-~~~~~r~~iv~~G~ 533 (660)
.. -..++.+.+-|+... +.....+++.|.+.-|+.-+... +-..-...|...|+-+- .+.+++..+....|
T Consensus 190 Esvkeea~gv~~~L~vveNlv~~r~~~~~~~~e~~ll~WLL~rl~~k~~f~aNk~YasEiLaillq~s~e~~~~~~~l~G 269 (536)
T KOG2734|consen 190 ESVKEEADGVHNTLAVVENLVEVRPAICTEIVEQGLLSWLLKRLKGKAAFDANKQYASEILAILLQNSDENRKLLGPLDG 269 (536)
T ss_pred hcchhhhhhhHHHHHHHHHHHhccHHHHHHHHHhhHHHHHHHHHhcccCcchhHHHHHHHHHHHhccCchhhhhhcCccc
Confidence 22 234466677788766 88888899998777777644332 11223344555666555 44457778888889
Q ss_pred HHHHHHHhc---CCC------HHHHHHHHHHHHHhhccchhhhhhcchhhhHHHhhcChHHHHHHhhcCCCHHHHHHHHH
Q 006114 534 IKALLAMVR---SGN------IDVIAQVARGLANFAKCESRAIVQGQRKGRSHLMEDSALEWLIANSKTNSASTRRHVEL 604 (660)
Q Consensus 534 V~~Lv~lL~---s~~------~~v~~~Al~aLanLA~~~~~~~aq~~~e~r~~Li~~G~v~~Lv~lL~s~d~~vr~~Aa~ 604 (660)
+..++.-+. ..+ .+.-.+...+|+.+-. ++.+|..++...|+....-+++. -...+--|..
T Consensus 270 iD~lL~~la~yk~~dP~~~~E~EmmeNLFdcLCs~lm---------~~~nr~~Fl~~EGlqLm~Lmlr~-Kk~sr~Salk 339 (536)
T KOG2734|consen 270 IDVLLRQLAVYKRHDPATVDEEEMMENLFDCLCSLLM---------APANRERFLKGEGLQLMNLMLRE-KKVSRGSALK 339 (536)
T ss_pred HHHHHhhcchhhccCCCCcCHHHHHHHHHHHHHHHhc---------ChhhhhhhhccccHHHHHHHHHH-HHHhhhhHHH
Confidence 998887763 122 2344444444444332 36788889888888877666665 3455666788
Q ss_pred HHHHhhcCC---ccHHHHHhcCcHHHHHHHHh
Q 006114 605 ALCHLAQNE---DNARDFISRGGAKELVQISI 633 (660)
Q Consensus 605 AL~nLa~~~---e~~~~Ive~G~l~~Lv~lL~ 633 (660)
+|-+...++ +++..+++.+|+..+..+..
T Consensus 340 vLd~am~g~~gt~~C~kfVe~lGLrtiF~~FM 371 (536)
T KOG2734|consen 340 VLDHAMFGPEGTPNCNKFVEILGLRTIFPLFM 371 (536)
T ss_pred HHHHHHhCCCchHHHHHHHHHHhHHHHHHHHh
Confidence 888776654 67788888888877766554
No 109
>COG5231 VMA13 Vacuolar H+-ATPase V1 sector, subunit H [Energy production and conversion]
Probab=97.03 E-value=0.0076 Score=63.66 Aligned_cols=189 Identities=14% Similarity=0.044 Sum_probs=125.1
Q ss_pred hhCCCCHHHHHHHHHHHHHhhCCchhHHHHHHcC-CHHHHHHHHccCC-CHHHHHHHHHHHHHhhcCchhHHHHHh-cCc
Q 006114 415 LLTSEDPDVQIHAVKVVANLAAEDINQEKIVEEG-GLDALLLLLRTSQ-NTTILRVASGAIANLAMNEMNQGLIMS-RGG 491 (660)
Q Consensus 415 LL~s~d~~vr~~Aa~aL~nLa~~~en~~~Ive~G-gI~~Lv~LL~~s~-d~~v~~~Aa~AL~nLA~~~~n~~~Ive-~g~ 491 (660)
++++=++-.+-.|+..+.+++..++.|..+-..+ .-..++.+++++- +.+++.+..-++|.++.++.....|-. .+.
T Consensus 157 l~Q~i~~lTrlfav~cl~~l~~~~e~R~i~waentcs~r~~e~l~n~vg~~qlQY~SL~~iw~lTf~~~~aqdi~K~~dl 236 (432)
T COG5231 157 LSQLIDFLTRLFAVSCLSNLEFDVEKRKIEWAENTCSRRFMEILQNYVGVKQLQYNSLIIIWILTFSKECAQDIDKMDDL 236 (432)
T ss_pred HHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHhhHHHHHHHHHHhhhhhhhhHHHHHHHHHHHhcCHHHHHHHHHHHHH
Confidence 3344455678899999999999999887766543 4566778887553 478999999999999999887755554 455
Q ss_pred cHHHHHhhcCCCCHHHHHHHHHHHHHHhc-Chh-HHHHHHhcc-------------------------------------
Q 006114 492 GQLLAKTASKTDDPQTLRMVAGALANLCG-NEK-LHTMLEEDG------------------------------------- 532 (660)
Q Consensus 492 I~~Ll~LL~~s~d~~v~~~Aa~aLanLa~-~~~-~r~~iv~~G------------------------------------- 532 (660)
|..|+.+.+......|.+.+++.+.|++. .|. .-..+.-.|
T Consensus 237 i~dli~iVk~~~keKV~Rlc~~Iv~n~~dK~pK~~I~~~lll~~~~k~vq~L~erkysDEel~~di~~i~s~l~~~~k~l 316 (432)
T COG5231 237 INDLIAIVKERAKEKVLRLCCGIVANVLDKSPKGYIFSPLLLNDISKCVQVLLERKYSDEELVIDIERIRSRLVQNTKKL 316 (432)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccchhhhhHhhcchHHHHHHHHhcCCChHHHHHHHHHHHHHHHhhhhhh
Confidence 66677776654455677778888888773 211 111111112
Q ss_pred ----------------------------------------HHHHHHHHhcCCCHH-HHHHHHHHHHHhhccchhhhhhcc
Q 006114 533 ----------------------------------------AIKALLAMVRSGNID-VIAQVARGLANFAKCESRAIVQGQ 571 (660)
Q Consensus 533 ----------------------------------------~V~~Lv~lL~s~~~~-v~~~Al~aLanLA~~~~~~~aq~~ 571 (660)
.+..|..++++.++. ....||.-|+.+. +..
T Consensus 317 ~~fD~Y~~ELdsg~l~wSp~H~~~dFWs~N~d~l~kdny~i~k~L~~~lq~n~~nt~i~vAc~Di~~~V--------r~~ 388 (432)
T COG5231 317 CIFDNYLNELDSGRLEWSPYHHKKDFWSTNLDMLIKDNYEIVKVLKKYLQSNNPNTWICVACSDIFQLV--------RAS 388 (432)
T ss_pred hHHHHHHHHHhhCcccCCCcccccCchhhhHHHHhhhhHHHHHHHHHHHhcCCCCceEeeeHhhHHHHH--------HhC
Confidence 111222222222222 1122333333332 235
Q ss_pred hhhhHHHhhcChHHHHHHhhcCCCHHHHHHHHHHHHHhhc
Q 006114 572 RKGRSHLMEDSALEWLIANSKTNSASTRRHVELALCHLAQ 611 (660)
Q Consensus 572 ~e~r~~Li~~G~v~~Lv~lL~s~d~~vr~~Aa~AL~nLa~ 611 (660)
|+++..+...|+-..++.+++++|+.|+-.|..|+..|-.
T Consensus 389 PE~~~vl~Kyg~k~~im~L~nh~d~~VkfeAl~a~q~~i~ 428 (432)
T COG5231 389 PEINAVLSKYGVKEIIMNLINHDDDDVKFEALQALQTCIS 428 (432)
T ss_pred chHHHHHHHhhhHHHHHHHhcCCCchhhHHHHHHHHHHHh
Confidence 7899999999999999999999999999999999877643
No 110
>KOG1789 consensus Endocytosis protein RME-8, contains DnaJ domain [Intracellular trafficking, secretion, and vesicular transport; Posttranslational modification, protein turnover, chaperones]
Probab=97.02 E-value=0.073 Score=63.54 Aligned_cols=111 Identities=21% Similarity=0.213 Sum_probs=95.2
Q ss_pred CCHHHHHHhhC-CCCHHHHHHHHHHHHHhhCCchhHHHHHHcCCHHHHHHHHccCCCHHHHHHHHHHHHHhhcCchhHHH
Q 006114 407 VGLPKILQLLT-SEDPDVQIHAVKVVANLAAEDINQEKIVEEGGLDALLLLLRTSQNTTILRVASGAIANLAMNEMNQGL 485 (660)
Q Consensus 407 ggI~~LV~LL~-s~d~~vr~~Aa~aL~nLa~~~en~~~Ive~GgI~~Lv~LL~~s~d~~v~~~Aa~AL~nLA~~~~n~~~ 485 (660)
|-.+-++.++. ..++.++.-|+.++.-+..+.+--..++..|.+..|+.+|- .-|..+..+...|+.|+.++.....
T Consensus 1771 g~F~l~~~~lr~~~~~~iq~LaL~Vi~~~Tan~~Cv~~~a~~~vL~~LL~lLH--S~PS~R~~vL~vLYAL~S~~~i~ke 1848 (2235)
T KOG1789|consen 1771 GNFPLLITYLRCRKHPKLQILALQVILLATANKECVTDLATCNVLTTLLTLLH--SQPSMRARVLDVLYALSSNGQIGKE 1848 (2235)
T ss_pred cccHHHHHHHHHcCCchHHHHHHHHHHHHhcccHHHHHHHhhhHHHHHHHHHh--cChHHHHHHHHHHHHHhcCcHHHHH
Confidence 34555666665 46788999999988877778888888999999999999995 3566788999999999999999999
Q ss_pred HHhcCccHHHHHhhcCCCCHHHHHHHHHHHHHHh
Q 006114 486 IMSRGGGQLLAKTASKTDDPQTLRMVAGALANLC 519 (660)
Q Consensus 486 Ive~g~I~~Ll~LL~~s~d~~v~~~Aa~aLanLa 519 (660)
.++.|++..++.++-.+.+++.+..|+..++.|.
T Consensus 1849 A~~hg~l~yil~~~c~~~~~QqRAqaAeLlaKl~ 1882 (2235)
T KOG1789|consen 1849 ALEHGGLMYILSILCLTNSDQQRAQAAELLAKLQ 1882 (2235)
T ss_pred HHhcCchhhhhHHHhccCcHHHHHHHHHHHHHhh
Confidence 9999999999998888888999999999999987
No 111
>COG5369 Uncharacterized conserved protein [Function unknown]
Probab=96.96 E-value=0.0074 Score=67.40 Aligned_cols=162 Identities=14% Similarity=0.098 Sum_probs=125.3
Q ss_pred HHHhCCCHHHHHHhhCCCCHHHHHHHHHHHHHhhC-CchhHHHHHHcCCHHHHHHHHccCCCHHHHHHHHHHHHHhhcCc
Q 006114 402 KICDEVGLPKILQLLTSEDPDVQIHAVKVVANLAA-EDINQEKIVEEGGLDALLLLLRTSQNTTILRVASGAIANLAMNE 480 (660)
Q Consensus 402 ~I~e~ggI~~LV~LL~s~d~~vr~~Aa~aL~nLa~-~~en~~~Ive~GgI~~Lv~LL~~s~d~~v~~~Aa~AL~nLA~~~ 480 (660)
.+.+...++.|+.+|+.|+..+.-.+...++|+.. -...+..+...|.|..|+.++. +.|..++.+..|.++.+..+.
T Consensus 426 gL~d~~I~elLi~~Ls~Peimi~~~~t~~icn~vv~fsnL~~~fL~~~iIdvl~~~v~-sKDdaLqans~wvlrHlmync 504 (743)
T COG5369 426 GLLDYPIVELLIDALSNPEIMIEFPDTIDICNKVVPFSNLGAGFLEKSIIDVLVNLVM-SKDDALQANSEWVLRHLMYNC 504 (743)
T ss_pred hccccchHHHHHHHhcCccceeeccchhhhhheeeeccchHHHHHHhhHHHHHHHHhh-cchhhhhhcchhhhhhhhhcC
Confidence 35566788999999999888888888899999887 5666889999999999999997 778899999999999998874
Q ss_pred hh--HHHHHhcCccHHHHHhhcCCCCHHHHHHHHHHHHHHhcC----hhHHHHHHhc----cHHHHHHHHhcCCCHHHHH
Q 006114 481 MN--QGLIMSRGGGQLLAKTASKTDDPQTLRMVAGALANLCGN----EKLHTMLEED----GAIKALLAMVRSGNIDVIA 550 (660)
Q Consensus 481 ~n--~~~Ive~g~I~~Ll~LL~~s~d~~v~~~Aa~aLanLa~~----~~~r~~iv~~----G~V~~Lv~lL~s~~~~v~~ 550 (660)
.+ +-.....-|+..++....+ ++-.|+..+...|.|+..+ ++....+... =.+..|++.+...+|--..
T Consensus 505 q~~ekf~~Lakig~~kvl~~~ND-pc~~vq~q~lQilrNftc~~~knEkskdv~~K~~p~~ylfk~l~~k~e~~np~~i~ 583 (743)
T COG5369 505 QKNEKFKFLAKIGVEKVLSYTND-PCFKVQHQVLQILRNFTCDTSKNEKSKDVFIKATPRRYLFKRLIDKYEENNPMEIL 583 (743)
T ss_pred cchhhhhhHHhcCHHHHHHHhcC-cccccHHHHHHHHHhcccccccccccceeEEecChHHHHHHHHHHHHHhcCchhhh
Confidence 43 4455666678888888754 6778999999999999742 2222222211 1455677788888888888
Q ss_pred HHHHHHHHhhccchh
Q 006114 551 QVARGLANFAKCESR 565 (660)
Q Consensus 551 ~Al~aLanLA~~~~~ 565 (660)
+.+..|.++|.|+..
T Consensus 584 ~~~yilv~~aa~d~~ 598 (743)
T COG5369 584 EGCYILVRNAACDDT 598 (743)
T ss_pred hhHHHHHHHHhccch
Confidence 888888888887753
No 112
>PF09759 Atx10homo_assoc: Spinocerebellar ataxia type 10 protein domain; InterPro: IPR019156 This is the conserved C-terminal 100 residues of Ataxin-10. Ataxin-10 belongs to the family of armadillo repeat proteins and in solution it tends to form homotrimeric complexes, which associate via a tip-to-tip association in a horseshoe-shaped contact with the concave sides of the molecules facing each other. This domain may represent the homo-association site since that is located near the C terminus of Ataxin-10. The protein does not contain a signal sequence for secretion or any subcellular compartment confirming its cytoplasmic localisation, specifically to the olivocerebellar region [].
Probab=96.94 E-value=0.0031 Score=56.52 Aligned_cols=66 Identities=29% Similarity=0.266 Sum_probs=57.6
Q ss_pred HHHHHHHHHHhhC-CchhHHHHHHcCCHHHHHHHHccC-CCHHHHHHHHHHHHHhhcC-chhHHHHHhc
Q 006114 424 QIHAVKVVANLAA-EDINQEKIVEEGGLDALLLLLRTS-QNTTILRVASGAIANLAMN-EMNQGLIMSR 489 (660)
Q Consensus 424 r~~Aa~aL~nLa~-~~en~~~Ive~GgI~~Lv~LL~~s-~d~~v~~~Aa~AL~nLA~~-~~n~~~Ive~ 489 (660)
+...+.+|+|++. ++.++..+.+.||||.++....-+ .+|-+++.|..||.||+.+ ++|+..|...
T Consensus 3 K~~lvrlianl~~~~~~~Qd~vr~~~Gi~liL~~c~iD~~nP~irEwai~aiRnL~e~n~eNQ~~I~~L 71 (102)
T PF09759_consen 3 KRDLVRLIANLCYKNKEVQDLVRELGGIPLILSCCNIDDHNPFIREWAIFAIRNLCEGNPENQEFIAQL 71 (102)
T ss_pred HHHHHHHHHHHHhCCHHHHHHHHHcCChHHHHHhcCCCcccHHHHHHHHHHHHHHHhCCHHHHHHHHhc
Confidence 5567889999999 899999999999999999887543 5899999999999999976 9999988763
No 113
>COG5181 HSH155 U2 snRNP spliceosome subunit [RNA processing and modification]
Probab=96.92 E-value=0.0054 Score=69.27 Aligned_cols=226 Identities=17% Similarity=0.156 Sum_probs=132.0
Q ss_pred HHHHHHhhCCCCHHHHHHHHHHHHHhhCCchhH---HHHHHcCCHHHHHHHHccCCCHHHHHHHHHHHHHhhcCch---h
Q 006114 409 LPKILQLLTSEDPDVQIHAVKVVANLAAEDINQ---EKIVEEGGLDALLLLLRTSQNTTILRVASGAIANLAMNEM---N 482 (660)
Q Consensus 409 I~~LV~LL~s~d~~vr~~Aa~aL~nLa~~~en~---~~Ive~GgI~~Lv~LL~~s~d~~v~~~Aa~AL~nLA~~~~---n 482 (660)
+..++.+|++..+.+|.+|+...+.|+.--.++ ..+...|.| |..-|. ..+|++.....+|++.|...-. .
T Consensus 606 vStiL~~L~~k~p~vR~~aadl~~sl~~vlk~c~e~~~l~klg~i--LyE~lg-e~ypEvLgsil~Ai~~I~sv~~~~~m 682 (975)
T COG5181 606 VSTILKLLRSKPPDVRIRAADLMGSLAKVLKACGETKELAKLGNI--LYENLG-EDYPEVLGSILKAICSIYSVHRFRSM 682 (975)
T ss_pred HHHHHHHhcCCCccHHHHHHHHHHHHHHHHHhcchHHHHHHHhHH--HHHhcC-cccHHHHHHHHHHHHHHhhhhccccc
Confidence 445557788999999999999998886522211 112222221 334444 5688999988888888854422 1
Q ss_pred HHHHHhcCccHHHHHhhcCCCCHHHHHHHHHHHHHHhc-Chh---HHHHHHhccHHHHHHHHhcCCCHHHHHHHHHHHHH
Q 006114 483 QGLIMSRGGGQLLAKTASKTDDPQTLRMVAGALANLCG-NEK---LHTMLEEDGAIKALLAMVRSGNIDVIAQVARGLAN 558 (660)
Q Consensus 483 ~~~Ive~g~I~~Ll~LL~~s~d~~v~~~Aa~aLanLa~-~~~---~r~~iv~~G~V~~Lv~lL~s~~~~v~~~Al~aLan 558 (660)
+..| .|++|.|..+|.+ .+..+..+....+..+|. .|+ .+.-| ..---|+++|.+.+.+++.+|..+++.
T Consensus 683 qpPi--~~ilP~ltPILrn-kh~Kv~~nti~lvg~I~~~~peyi~~rEWM---RIcfeLvd~Lks~nKeiRR~A~~tfG~ 756 (975)
T COG5181 683 QPPI--SGILPSLTPILRN-KHQKVVANTIALVGTICMNSPEYIGVREWM---RICFELVDSLKSWNKEIRRNATETFGC 756 (975)
T ss_pred CCch--hhccccccHhhhh-hhHHHhhhHHHHHHHHHhcCcccCCHHHHH---HHHHHHHHHHHHhhHHHHHhhhhhhhh
Confidence 2222 5788999999975 777888888888888873 232 22222 123347888899999999999999999
Q ss_pred hhccc-h-hhhhh--------------cchhhhHHHhh----cChHHHHHHhhcCCCHHHHHHHHHHHHHhhcCC--ccH
Q 006114 559 FAKCE-S-RAIVQ--------------GQRKGRSHLME----DSALEWLIANSKTNSASTRRHVELALCHLAQNE--DNA 616 (660)
Q Consensus 559 LA~~~-~-~~~aq--------------~~~e~r~~Li~----~G~v~~Lv~lL~s~d~~vr~~Aa~AL~nLa~~~--e~~ 616 (660)
|+..- | +++.- +...+-..+.+ ..++|.|+.--.++...|+..+..|++.+-..- ...
T Consensus 757 Is~aiGPqdvL~~LlnnLkvqeRq~RvctsvaI~iVae~cgpfsVlP~lm~dY~TPe~nVQnGvLkam~fmFeyig~~s~ 836 (975)
T COG5181 757 ISRAIGPQDVLDILLNNLKVQERQQRVCTSVAISIVAEYCGPFSVLPTLMSDYETPEANVQNGVLKAMCFMFEYIGQASL 836 (975)
T ss_pred HHhhcCHHHHHHHHHhcchHHHHHhhhhhhhhhhhhHhhcCchhhHHHHHhcccCchhHHHHhHHHHHHHHHHHHHHHHH
Confidence 87431 1 11100 00111112222 234455554444556677777777777664432 111
Q ss_pred HHHHhcCcHHHHHHHHhcCChHHHHHHHHH
Q 006114 617 RDFISRGGAKELVQISIESSREDIRNLAKK 646 (660)
Q Consensus 617 ~~Ive~G~l~~Lv~lL~s~s~~~ir~~A~~ 646 (660)
..+- .+.|.|-..+- ..+++.|+.|..
T Consensus 837 dYvy--~itPlleDAlt-DrD~vhRqta~n 863 (975)
T COG5181 837 DYVY--SITPLLEDALT-DRDPVHRQTAMN 863 (975)
T ss_pred HHHH--HhhHHHHhhhc-ccchHHHHHHHH
Confidence 2221 13333333333 344567777763
No 114
>PF10174 Cast: RIM-binding protein of the cytomatrix active zone; InterPro: IPR019323 This entry represents a family of proteins that form part of the CAZ (cytomatrix at the active zone) complex which is involved in determining the site of synaptic vesicle fusion []. Located at the C terminus is a PDZ-binding motif that binds directly to RIM (a small G protein Rab-3A effector). These proteins also contain four coiled-coil domains [].
Probab=96.90 E-value=1.6 Score=52.32 Aligned_cols=131 Identities=23% Similarity=0.337 Sum_probs=78.5
Q ss_pred hHHHHHHHHHHHHHhhHHHHHHh-------h-hhhhhHHHHHH--HHHHHHhhH---HHHHhhHHHHHHHHHHHHHHHHH
Q 006114 15 YESLCRKLETQVDHLTAEIERKQ-------K-LRENDKCELEK--LLRECQISY---DEAKDNLVTQVELLTAKIEMQQK 81 (660)
Q Consensus 15 ~~~~~~~~~~~~~~~~~~~~~~~-------~-~~~~~~~~~~~--~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~ 81 (660)
|+|-+..+=..+|.+..|+.|.. . |+.......+- .+..++.+. +.=+..|.+.||-|..+++++..
T Consensus 278 ~~s~~~~mK~k~d~~~~eL~rk~~E~~~~qt~l~~~~~~~~d~r~hi~~lkesl~~ke~~~~~Lqsdve~Lr~rle~k~~ 357 (775)
T PF10174_consen 278 YKSHSLAMKSKMDRLKLELSRKKSELEALQTRLETLEEQDSDMRQHIEVLKESLRAKEQEAEMLQSDVEALRFRLEEKNS 357 (775)
T ss_pred HHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHH
Confidence 55555555555666665555543 2 44444333332 111222222 33344566777777777776644
Q ss_pred hhhhchHHHHHHHHHHHhhHHHHHHhhhhhhhHHHHhhhhHHHHHHHHHhhhhhhhhhhhhHHHHHHHHHHHhhhhhhhh
Q 006114 82 LRENDKYEFEKQLRESQISYDESMRNLVTRSEFLEKENAHLELEVEKILGELNHQKDQNNLKREKIVQLEISLKNSKQQQ 161 (660)
Q Consensus 82 ~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 161 (660)
. +.+-+.+ ++-+..|.+++-.||.++...+.......+.+..++..||-.|+.--.+-
T Consensus 358 ~-----------l~kk~~~-----------~~~~qeE~~~~~~Ei~~l~d~~d~~e~ki~~Lq~kie~Lee~l~ekd~ql 415 (775)
T PF10174_consen 358 Q-----------LEKKQAQ-----------IEKLQEEKSRLQGEIEDLRDMLDKKERKINVLQKKIENLEEQLREKDRQL 415 (775)
T ss_pred H-----------HHHHHHH-----------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3 3333333 34458899999999999999998888888888999888888887633333
Q ss_pred hhhhhh
Q 006114 162 LDNSSY 167 (660)
Q Consensus 162 ~~~~~~ 167 (660)
.+...|
T Consensus 416 ~~~k~R 421 (775)
T PF10174_consen 416 DEEKER 421 (775)
T ss_pred HHHHHH
Confidence 333333
No 115
>KOG4673 consensus Transcription factor TMF, TATA element modulatory factor [Transcription]
Probab=96.90 E-value=0.75 Score=53.06 Aligned_cols=230 Identities=20% Similarity=0.215 Sum_probs=117.6
Q ss_pred HHhhHHHHHhhHHHHHHHHHHHHHHHHHhhhhch---HHHHHHHHHHHhhHHHHHHhhhhhhhHHHHhhhhHHHHHHHHH
Q 006114 54 CQISYDEAKDNLVTQVELLTAKIEMQQKLRENDK---YEFEKQLRESQISYDESMRNLVTRSEFLEKENAHLELEVEKIL 130 (660)
Q Consensus 54 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 130 (660)
+-.+.++.++-+..-+.+++|+.+||.+--.+.+ .+||-++.-.|.+||++-. .|.++||--..|.
T Consensus 510 il~~Kee~Ek~~~E~I~k~~ae~~rq~~~~~~sr~~~~~le~~~~a~qat~d~a~~-------Dlqk~nrlkQdea---- 578 (961)
T KOG4673|consen 510 ILRDKEETEKLLQETIEKHQAELTRQKDYYSNSRALAAALEAQALAEQATNDEARS-------DLQKENRLKQDEA---- 578 (961)
T ss_pred HhhhHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHhhhhhhh-------hHHHHhhhhhhHH----
Confidence 3344466666666677788999999987655533 4677778888888887721 2222222111111
Q ss_pred hhhhhhhhhhhhHHHHHHHHHHHhhhhhhhhhhhhhhHHH-----------HHHhhHHHHHHHHHHHHHHHHHHhhhhch
Q 006114 131 GELNHQKDQNNLKREKIVQLEISLKNSKQQQLDNSSYQKV-----------LADTTQMYEKKITELIKQLEIEHARSEGA 199 (660)
Q Consensus 131 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----------~~~~~~~~~~~~~~l~~~l~~e~~~~~~~ 199 (660)
.+++...+.+-.+ +|.--+++--||.+|...|+.--.||..+
T Consensus 579 ---------------------------r~~~~~lvqqv~dLR~~L~~~Eq~aarrEd~~R~Ei~~LqrRlqaaE~R~eel 631 (961)
T KOG4673|consen 579 ---------------------------RERESMLVQQVEDLRQTLSKKEQQAARREDMFRGEIEDLQRRLQAAERRCEEL 631 (961)
T ss_pred ---------------------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 1111111222222 23333344445555555554433333322
Q ss_pred HHHHHHHHHHHhhhhh-hHHHHhhhhhHHHHHHhhHHHHHHHHHHHHhhhhhhhhhhhhhhHHhH-HHHHHHhhhhhccc
Q 006114 200 EEQVDTMKKLISDNQK-SIEQYEMENSTYQKALADTTQLYEKKIAELNKKLEDEHACFEGAVEQL-DMVKKLLSDYQNSN 277 (660)
Q Consensus 200 ~~~~~~l~~~l~~~~~-~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~ 277 (660)
--+| +..-. -+.| . -.+|.+|...+-.||+.=..|..+|.|-..-+..+...= -.-..||+-.-.+-
T Consensus 632 ~q~v-------~~TTrPLlRQ--I--E~lQ~tl~~~~tawereE~~l~~rL~dSQtllr~~v~~eqgekqElL~~~~~l~ 700 (961)
T KOG4673|consen 632 IQQV-------PETTRPLLRQ--I--EALQETLSKAATAWEREERSLNERLSDSQTLLRINVLEEQGEKQELLSLNFSLP 700 (961)
T ss_pred Hhhc-------cccccHHHHH--H--HHHHHHHhhhhhHHHHHHHHHHHhhhhHHHHHHHHHHHHhhhHHHHHHHhcCCC
Confidence 2222 21110 0000 0 134556666666666666666666665444332221111 11112333222211
Q ss_pred c-------chhHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHhhhhccHHHHHHHHHH
Q 006114 278 Q-------GQKEVHELCVKLKETRQLHESAVYEVQTLKSEYKNLLEEKETMSDELQAARQRL 332 (660)
Q Consensus 278 ~-------~~~e~~~Lk~~Le~e~~~~e~~e~E~~~lks~l~~l~~~~~~~~eel~~~~k~l 332 (660)
. =..|-..|++.|+.+++.-....+|...+|.++.++..--..++.++-+.++.+
T Consensus 701 s~~~q~sllraE~~~l~~~le~e~nr~~~~~~e~~~~qeE~~~l~~r~~~le~e~r~~k~~~ 762 (961)
T KOG4673|consen 701 SSPIQLSLLRAEQGQLSKSLEKERNRAAENRQEYLAAQEEADTLEGRANQLEVEIRELKRKH 762 (961)
T ss_pred cchhHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 1 123446788899999998888899999998888877766666666655544443
No 116
>PRK03918 chromosome segregation protein; Provisional
Probab=96.89 E-value=1.8 Score=52.76 Aligned_cols=14 Identities=14% Similarity=0.287 Sum_probs=5.6
Q ss_pred hhHHHHHHHHHHHH
Q 006114 63 DNLVTQVELLTAKI 76 (660)
Q Consensus 63 ~~~~~~~~~~~~~~ 76 (660)
.++..+++.+..++
T Consensus 310 ~~l~~~~~~l~~~~ 323 (880)
T PRK03918 310 REIEKRLSRLEEEI 323 (880)
T ss_pred HHHHHHHHHHHHHH
Confidence 33444444443333
No 117
>PF10165 Ric8: Guanine nucleotide exchange factor synembryn; InterPro: IPR019318 Ric8 is involved in the EGL-30 neurotransmitter signalling pathway []. It is a guanine nucleotide exchange factor [] that regulates neurotransmitter secretion.
Probab=96.86 E-value=0.052 Score=61.21 Aligned_cols=254 Identities=17% Similarity=0.171 Sum_probs=147.4
Q ss_pred hhcCchhHHHHHhCCCHHHHHHhh----------CCCCHHHHHHHHHHHHHhhC-CchhHHHHHHcCCHHHHHHHHccC-
Q 006114 393 LSGQRATIAKICDEVGLPKILQLL----------TSEDPDVQIHAVKVVANLAA-EDINQEKIVEEGGLDALLLLLRTS- 460 (660)
Q Consensus 393 laa~~~~~~~I~e~ggI~~LV~LL----------~s~d~~vr~~Aa~aL~nLa~-~~en~~~Ive~GgI~~Lv~LL~~s- 460 (660)
++.+..+...++...++..|+.+- ..++..+...|+++|+|+.. ++..|..+++.|+.+.++..|..+
T Consensus 8 LsRd~~~~~~l~~~~~l~~L~~~a~l~~~~~~~~~~~~~~v~~EALKCL~N~lf~s~~aR~~~~~~~~~~~l~~~Lk~~~ 87 (446)
T PF10165_consen 8 LSRDPTGLDPLFTEEGLSTLLKHAGLSESDEDEFESPDPDVSREALKCLCNALFLSPSARQIFVDLGLAEKLCERLKNYS 87 (446)
T ss_pred HccCcccchhhccHHHHHHHHHhcCCcccccccccCCChHHHHHHHHHHHHHHhCCHHHHHHHHHcCcHHHHHHHHHccc
Confidence 333444444455555555555433 35688999999999999888 788899999999999999999855
Q ss_pred ---CCHHHHHHHHHHHHHhhcC-chhHHHHHh-cCccHHHHHhhcC--------C--------CCHHHHHHHHHHHHHHh
Q 006114 461 ---QNTTILRVASGAIANLAMN-EMNQGLIMS-RGGGQLLAKTASK--------T--------DDPQTLRMVAGALANLC 519 (660)
Q Consensus 461 ---~d~~v~~~Aa~AL~nLA~~-~~n~~~Ive-~g~I~~Ll~LL~~--------s--------~d~~v~~~Aa~aLanLa 519 (660)
.+.++.-..++.|.-++.. ++.+..++. .+++..++..|.. . .+..+...++.++.|+.
T Consensus 88 ~~~~~~d~~Fl~~RLLFLlTa~~~~~~~~L~~e~~~~~~l~~~L~~~l~~~~~~~~~~~~~~~~~~~~l~EiLKllFNit 167 (446)
T PF10165_consen 88 DSSQPSDVEFLDSRLLFLLTALRPDDRKKLIEEHHGVELLTEALERHLKVKSKSSQEPTAPSPMDEEALSEILKLLFNIT 167 (446)
T ss_pred ccCCChhHHHHHHHHHHHHhcCChhHHHHHHHHhhhHHHHHHHHHHHHhcccccccccCCCCcchHHHHHHHHHHHHHhh
Confidence 2677888899998888754 666666665 5777777775532 0 24455667788999997
Q ss_pred -cChhHHHHHHhccHHHHHHHHhc---------CCCHHHHHHHHHHHHHhhccchhhhhhcchhhhH---HHhhcChHHH
Q 006114 520 -GNEKLHTMLEEDGAIKALLAMVR---------SGNIDVIAQVARGLANFAKCESRAIVQGQRKGRS---HLMEDSALEW 586 (660)
Q Consensus 520 -~~~~~r~~iv~~G~V~~Lv~lL~---------s~~~~v~~~Al~aLanLA~~~~~~~aq~~~e~r~---~Li~~G~v~~ 586 (660)
.++.... -...+.++.|+.++. .+...+..+++.+|.|+-......+-........ ......++..
T Consensus 168 ~~~~~~~~-~~~~~~~~~l~~il~~~l~~~~~~~~l~~~~~~~in~L~nlpl~~~~~l~~~~~~~~~~~~~~~~~~~v~~ 246 (446)
T PF10165_consen 168 LHYPKSVP-EEFSPSIPHLVSILRRLLPPPPSSPPLDPPHSHAINALLNLPLECLDSLLSPKFQQSSLFPEGDNMDVVER 246 (446)
T ss_pred hccCcccc-hhhhHHHHHHHHHHHHHhccCCCCCcchhhHHHHHHHHhCCChHHHhhhhcccCCcccccCCCCChHHHHH
Confidence 3332222 122344444444432 1234577888899988843222110000000000 0111234445
Q ss_pred HHHhhcC----C-C---HHHHHHHHHHHHHhhcCCccHHHHHh-----------------cCcHHHHHHHHhcCChHHHH
Q 006114 587 LIANSKT----N-S---ASTRRHVELALCHLAQNEDNARDFIS-----------------RGGAKELVQISIESSREDIR 641 (660)
Q Consensus 587 Lv~lL~s----~-d---~~vr~~Aa~AL~nLa~~~e~~~~Ive-----------------~G~l~~Lv~lL~s~s~~~ir 641 (660)
|+.+|.. . + ...-.-...+|..++......+..++ .+.-..|++++-+.. ..++
T Consensus 247 Ll~~Ld~~l~~~~~~~l~~~l~PlL~lL~~~~~~~~~~Rk~lr~~lLP~~~Dr~~~~e~~~tL~~rLlrLmt~~~-~~~k 325 (446)
T PF10165_consen 247 LLDFLDKRLDKYEALKLDELLTPLLTLLTRLARAAREVRKYLRARLLPPDKDRKKPPEKGDTLRSRLLRLMTSPD-PQLK 325 (446)
T ss_pred HHHHHHHHHHhcCcccchhhHhhHHHHHHHHHHhcHHHHHHHHHHhCCChhhcccCCCCCcchHHHHHHHhCCCC-chHH
Confidence 5444332 1 1 12233345556666655433333332 345567777777666 6666
Q ss_pred HHHHHHH
Q 006114 642 NLAKKTM 648 (660)
Q Consensus 642 ~~A~~~L 648 (660)
..+...|
T Consensus 326 ~~vaell 332 (446)
T PF10165_consen 326 DAVAELL 332 (446)
T ss_pred HHHHHHH
Confidence 6666544
No 118
>KOG2734 consensus Uncharacterized conserved protein [Function unknown]
Probab=96.85 E-value=0.11 Score=57.36 Aligned_cols=210 Identities=18% Similarity=0.163 Sum_probs=145.1
Q ss_pred HHHHHHhhCCchhHHHHHHcCCHHHHHHHHccCCCHHHHHHHHHHHHHhhcC------ch----hHHHHHhcCccHHHHH
Q 006114 428 VKVVANLAAEDINQEKIVEEGGLDALLLLLRTSQNTTILRVASGAIANLAMN------EM----NQGLIMSRGGGQLLAK 497 (660)
Q Consensus 428 a~aL~nLa~~~en~~~Ive~GgI~~Lv~LL~~s~d~~v~~~Aa~AL~nLA~~------~~----n~~~Ive~g~I~~Ll~ 497 (660)
+.-+--+|.-|+.-..+++.+||+.|+.+|. +.|.+|...+...|.-|+.. .+ .-..+++.++++.|+.
T Consensus 105 IQ~mhvlAt~PdLYp~lveln~V~slL~LLg-HeNtDI~iavvdLLqELTD~Dv~~es~egAevLidaLvdg~vlaLLvq 183 (536)
T KOG2734|consen 105 IQEMHVLATMPDLYPILVELNAVQSLLELLG-HENTDIAIAVVDLLQELTDEDVLYESEEGAEVLIDALVDGQVLALLVQ 183 (536)
T ss_pred HHHHHhhhcChHHHHHHHHhccHHHHHHHhc-CCCchhHHHHHHHHHHhhhhcccccccccHHHHHHHHHhccHHHHHHH
Confidence 4445557778888888999999999999997 88888988888888888753 12 2345567888999998
Q ss_pred hhcC-----CCCHHHHHHHHHHHHHHh-cChhHHHHHHhccHHHHHHHHhcC--CCHHHHHHHHHHHHHhhccchhhhhh
Q 006114 498 TASK-----TDDPQTLRMVAGALANLC-GNEKLHTMLEEDGAIKALLAMVRS--GNIDVIAQVARGLANFAKCESRAIVQ 569 (660)
Q Consensus 498 LL~~-----s~d~~v~~~Aa~aLanLa-~~~~~r~~iv~~G~V~~Lv~lL~s--~~~~v~~~Al~aLanLA~~~~~~~aq 569 (660)
.+.. ........++.+.+-|+. ..++.+..+++.|.+..|+.-+.. +-..-...|..+++-+-..+
T Consensus 184 nveRLdEsvkeea~gv~~~L~vveNlv~~r~~~~~~~~e~~ll~WLL~rl~~k~~f~aNk~YasEiLaillq~s------ 257 (536)
T KOG2734|consen 184 NVERLDESVKEEADGVHNTLAVVENLVEVRPAICTEIVEQGLLSWLLKRLKGKAAFDANKQYASEILAILLQNS------ 257 (536)
T ss_pred HHHHhhhcchhhhhhhHHHHHHHHHHHhccHHHHHHHHHhhHHHHHHHHHhcccCcchhHHHHHHHHHHHhccC------
Confidence 8753 122344556667788887 788999999999999998886552 22333455555665554332
Q ss_pred cchhhhHHHhhcChHHHHHHhhcC---CC------HHHHHHHHHHHHHhhcCCccHHHHHhcCcHHHHHHHHhcCChHHH
Q 006114 570 GQRKGRSHLMEDSALEWLIANSKT---NS------ASTRRHVELALCHLAQNEDNARDFISRGGAKELVQISIESSREDI 640 (660)
Q Consensus 570 ~~~e~r~~Li~~G~v~~Lv~lL~s---~d------~~vr~~Aa~AL~nLa~~~e~~~~Ive~G~l~~Lv~lL~s~s~~~i 640 (660)
.+.+..+..-+|+..++.-+.- .+ ...-.+..-.||.+-..+.++..+....|+....-+++. ....
T Consensus 258 --~e~~~~~~~l~GiD~lL~~la~yk~~dP~~~~E~EmmeNLFdcLCs~lm~~~nr~~Fl~~EGlqLm~Lmlr~--Kk~s 333 (536)
T KOG2734|consen 258 --DENRKLLGPLDGIDVLLRQLAVYKRHDPATVDEEEMMENLFDCLCSLLMAPANRERFLKGEGLQLMNLMLRE--KKVS 333 (536)
T ss_pred --chhhhhhcCcccHHHHHhhcchhhccCCCCcCHHHHHHHHHHHHHHHhcChhhhhhhhccccHHHHHHHHHH--HHHh
Confidence 2355566667777777754421 22 345677778888888899999999988887766666654 2334
Q ss_pred HHHHHHHH
Q 006114 641 RNLAKKTM 648 (660)
Q Consensus 641 r~~A~~~L 648 (660)
+.-|.+.|
T Consensus 334 r~SalkvL 341 (536)
T KOG2734|consen 334 RGSALKVL 341 (536)
T ss_pred hhhHHHHH
Confidence 44444555
No 119
>PHA02562 46 endonuclease subunit; Provisional
Probab=96.85 E-value=0.25 Score=56.95 Aligned_cols=58 Identities=22% Similarity=0.183 Sum_probs=28.4
Q ss_pred hhHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHhhhhccHHHHHHHHHHHHHHH
Q 006114 280 QKEVHELCVKLKETRQLHESAVYEVQTLKSEYKNLLEEKETMSDELQAARQRLLVEEK 337 (660)
Q Consensus 280 ~~e~~~Lk~~Le~e~~~~e~~e~E~~~lks~l~~l~~~~~~~~eel~~~~k~l~~e~~ 337 (660)
...+.+++..+........+...+...+++++..+.......++++.++...+.+-..
T Consensus 336 ~~~i~el~~~i~~~~~~i~~~~~~~~~l~~ei~~l~~~~~~~~~~l~~l~~~l~~~~~ 393 (562)
T PHA02562 336 SKKLLELKNKISTNKQSLITLVDKAKKVKAAIEELQAEFVDNAEELAKLQDELDKIVK 393 (562)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhchHHHHHHHHHHHHHHHH
Confidence 3334445555555455555555555555555555554444444444444444444433
No 120
>PF10165 Ric8: Guanine nucleotide exchange factor synembryn; InterPro: IPR019318 Ric8 is involved in the EGL-30 neurotransmitter signalling pathway []. It is a guanine nucleotide exchange factor [] that regulates neurotransmitter secretion.
Probab=96.83 E-value=0.02 Score=64.57 Aligned_cols=176 Identities=15% Similarity=0.100 Sum_probs=120.5
Q ss_pred HHHHHHHhhcCchhHHHHHhcCccHHHHHhh---------cCCCCHHHHHHHHHHHHHHh-cChhHHHHHHhccHHHHHH
Q 006114 469 ASGAIANLAMNEMNQGLIMSRGGGQLLAKTA---------SKTDDPQTLRMVAGALANLC-GNEKLHTMLEEDGAIKALL 538 (660)
Q Consensus 469 Aa~AL~nLA~~~~n~~~Ive~g~I~~Ll~LL---------~~s~d~~v~~~Aa~aLanLa-~~~~~r~~iv~~G~V~~Lv 538 (660)
|+.+|.-++.++.+...+....++..|+... ....++.+...|..||+|+. .++..|..+++.|+.+.++
T Consensus 1 ~L~~LRiLsRd~~~~~~l~~~~~l~~L~~~a~l~~~~~~~~~~~~~~v~~EALKCL~N~lf~s~~aR~~~~~~~~~~~l~ 80 (446)
T PF10165_consen 1 CLETLRILSRDPTGLDPLFTEEGLSTLLKHAGLSESDEDEFESPDPDVSREALKCLCNALFLSPSARQIFVDLGLAEKLC 80 (446)
T ss_pred CHHHHHHHccCcccchhhccHHHHHHHHHhcCCcccccccccCCChHHHHHHHHHHHHHHhCCHHHHHHHHHcCcHHHHH
Confidence 3557777888888888888888888888877 45678899999999999998 7899999999999999999
Q ss_pred HHhcCC-----CHHHHHHHHHHHHHhhccchhhhhhcchhhhHHHhh-cChHHHHHHhhcC-----------------CC
Q 006114 539 AMVRSG-----NIDVIAQVARGLANFAKCESRAIVQGQRKGRSHLME-DSALEWLIANSKT-----------------NS 595 (660)
Q Consensus 539 ~lL~s~-----~~~v~~~Al~aLanLA~~~~~~~aq~~~e~r~~Li~-~G~v~~Lv~lL~s-----------------~d 595 (660)
..++.. +.++.-...+.|.-++...+ ..+..+++ .+++..|+..+.. .+
T Consensus 81 ~~Lk~~~~~~~~~d~~Fl~~RLLFLlTa~~~--------~~~~~L~~e~~~~~~l~~~L~~~l~~~~~~~~~~~~~~~~~ 152 (446)
T PF10165_consen 81 ERLKNYSDSSQPSDVEFLDSRLLFLLTALRP--------DDRKKLIEEHHGVELLTEALERHLKVKSKSSQEPTAPSPMD 152 (446)
T ss_pred HHHHcccccCCChhHHHHHHHHHHHHhcCCh--------hHHHHHHHHhhhHHHHHHHHHHHHhcccccccccCCCCcch
Confidence 999865 78888888888877776543 34444444 5677766654322 02
Q ss_pred HHHHHHHHHHHHHhhcCCccHHHHHhcCcHHHHHHHHhcC--------ChHHHHHHHHHHHhcCc
Q 006114 596 ASTRRHVELALCHLAQNEDNARDFISRGGAKELVQISIES--------SREDIRNLAKKTMKSNP 652 (660)
Q Consensus 596 ~~vr~~Aa~AL~nLa~~~e~~~~Ive~G~l~~Lv~lL~s~--------s~~~ir~~A~~~L~~~p 652 (660)
.....-+..+++|+..+......-...+.++.|+.++..- ........+..+|.+-|
T Consensus 153 ~~~l~EiLKllFNit~~~~~~~~~~~~~~~~~l~~il~~~l~~~~~~~~l~~~~~~~in~L~nlp 217 (446)
T PF10165_consen 153 EEALSEILKLLFNITLHYPKSVPEEFSPSIPHLVSILRRLLPPPPSSPPLDPPHSHAINALLNLP 217 (446)
T ss_pred HHHHHHHHHHHHHhhhccCcccchhhhHHHHHHHHHHHHHhccCCCCCcchhhHHHHHHHHhCCC
Confidence 2344556777888876553322212334555555554422 11235566666665544
No 121
>smart00185 ARM Armadillo/beta-catenin-like repeats. Approx. 40 amino acid repeat. Tandem repeats form superhelix of helices that is proposed to mediate interaction of beta-catenin with its ligands. Involved in transducing the Wingless/Wnt signal. In plakoglobin arm repeats bind alpha-catenin and N-cadherin.
Probab=96.82 E-value=0.0026 Score=46.20 Aligned_cols=39 Identities=21% Similarity=0.463 Sum_probs=36.1
Q ss_pred hhHHHHHHhccHHHHHHHHhcCCCHHHHHHHHHHHHHhh
Q 006114 522 EKLHTMLEEDGAIKALLAMVRSGNIDVIAQVARGLANFA 560 (660)
Q Consensus 522 ~~~r~~iv~~G~V~~Lv~lL~s~~~~v~~~Al~aLanLA 560 (660)
++++..+++.|+++.|+.++.+++++++..|+++|+||+
T Consensus 2 ~~~~~~i~~~g~i~~L~~ll~~~~~~i~~~a~~aL~nl~ 40 (41)
T smart00185 2 DEQKQAVVDAGGLPALVELLKSEDEEVVKEAAWALSNLS 40 (41)
T ss_pred cHHHHHHHHCCCHHHHHHHHcCCCHHHHHHHHHHHHHHc
Confidence 457788999999999999999999999999999999997
No 122
>PF09726 Macoilin: Transmembrane protein; InterPro: IPR019130 This entry represents the multi-pass transmembrane protein Macoilin, which is highly conserved in eukaryotes. ; GO: 0016021 integral to membrane
Probab=96.82 E-value=0.22 Score=59.02 Aligned_cols=143 Identities=17% Similarity=0.278 Sum_probs=71.4
Q ss_pred hhHHHHHHHHHhhhhhhhhhhhhHHHHHHHHHH---Hhhh-hhhhhhhhhhhHHHHHHhhHHHHHHHHHHHHHHHHHHhh
Q 006114 120 AHLELEVEKILGELNHQKDQNNLKREKIVQLEI---SLKN-SKQQQLDNSSYQKVLADTTQMYEKKITELIKQLEIEHAR 195 (660)
Q Consensus 120 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~e~~~ 195 (660)
.+||.||++|+.+|++-......++.++..|.- .+|. .. .+...+..++.++..|.+..+.++..
T Consensus 421 ~rLE~dvkkLraeLq~~Rq~E~ELRsqis~l~~~Er~lk~eL~-----------qlr~ene~Lq~Kl~~L~~aRq~DKq~ 489 (697)
T PF09726_consen 421 SRLEADVKKLRAELQSSRQSEQELRSQISSLTNNERSLKSELS-----------QLRQENEQLQNKLQNLVQARQQDKQS 489 (697)
T ss_pred HHHHHHHHHHHHHHHhhhhhHHHHHHHHhhccccchHHHHHHH-----------HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 489999999999999988888888887665522 1111 12 23333334444444444444444433
Q ss_pred hhchHHHHHH-------HHHHHhhhhhhHHHHhhhhhHHHH-------HHhhHHHHHHHHHHHHhhhhhhhhhhhhhhHH
Q 006114 196 SEGAEEQVDT-------MKKLISDNQKSIEQYEMENSTYQK-------ALADTTQLYEKKIAELNKKLEDEHACFEGAVE 261 (660)
Q Consensus 196 ~~~~~~~~~~-------l~~~l~~~~~~~~~~~~~~~~~~~-------~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 261 (660)
...+|.++.. ++.+|.+-++.-.+-+ ....+ .-.+.+..-..++++|...+--=+.-+-..|+
T Consensus 490 l~~LEkrL~eE~~~R~~lEkQL~eErk~r~~ee---~~aar~~~~~~~~r~e~~e~~r~r~~~lE~E~~~lr~elk~kee 566 (697)
T PF09726_consen 490 LQQLEKRLAEERRQRASLEKQLQEERKARKEEE---EKAARALAQAQATRQECAESCRQRRRQLESELKKLRRELKQKEE 566 (697)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHH---HhhhhccccchhccchhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3333333322 2233333332211100 01111 11144555555555555444444444556677
Q ss_pred hHHHHHHHhhhhhcc
Q 006114 262 QLDMVKKLLSDYQNS 276 (660)
Q Consensus 262 ~~~~~~~~~~~~~~~ 276 (660)
++..+..-+....+.
T Consensus 567 ~~~~~e~~~~~lr~~ 581 (697)
T PF09726_consen 567 QIRELESELQELRKY 581 (697)
T ss_pred HHHHHHHHHHHHHHH
Confidence 777777666544443
No 123
>PF13513 HEAT_EZ: HEAT-like repeat; PDB: 2Z5J_A 2OT8_B 2Z5O_A 2H4M_A 2QMR_A 1QBK_B 2Z5M_A 2Z5K_A 2Z5N_A 1GCJ_B ....
Probab=96.78 E-value=0.0033 Score=49.32 Aligned_cols=55 Identities=24% Similarity=0.195 Sum_probs=45.6
Q ss_pred HHHHHHHHHHHHHHhcChhHHHHHHhccHHHHHHHHhcCCCHHHHHHHHHHHHHh
Q 006114 505 PQTLRMVAGALANLCGNEKLHTMLEEDGAIKALLAMVRSGNIDVIAQVARGLANF 559 (660)
Q Consensus 505 ~~v~~~Aa~aLanLa~~~~~r~~iv~~G~V~~Lv~lL~s~~~~v~~~Al~aLanL 559 (660)
|.++..|+++|++++........-.-..+++.|+.++.++++.|+..|+++|++|
T Consensus 1 p~vR~~A~~aLg~l~~~~~~~~~~~~~~~~~~L~~~L~d~~~~VR~~A~~aLg~l 55 (55)
T PF13513_consen 1 PRVRRAAAWALGRLAEGCPELLQPYLPELLPALIPLLQDDDDSVRAAAAWALGNL 55 (55)
T ss_dssp HHHHHHHHHHHHCTTTTTHHHHHHHHHHHHHHHHHHTTSSSHHHHHHHHHHHHCH
T ss_pred CHHHHHHHHHHhhHhcccHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHhcC
Confidence 5789999999999985444444445568999999999999999999999999875
No 124
>PF00261 Tropomyosin: Tropomyosin; InterPro: IPR000533 Tropomyosins [], are a family of closely related proteins present in muscle and non-muscle cells. In striated muscle, tropomyosin mediate the interactions between the troponin complex and actin so as to regulate muscle contraction []. The role of tropomyosin in smooth muscle and non-muscle tissues is not clear. Tropomyosin is an alpha-helical protein that forms a coiled-coil structure of 2 parallel helices containing 2 sets of 7 alternating actin binding sites []. There are multiple cell-specific isoforms, created by differential splicing of the messenger RNA from one gene, but the proportions of the isoforms vary between different cell types. Muscle isoforms of tropomyosin are characterised by having 284 amino acid residues and a highly conserved N-terminal region, whereas non-muscle forms are generally smaller and are heterogeneous in their N-terminal region. This entry represents tropomyosin (Tmp) 1, 2 and 3. Within the yeast Tmp1 and Tmp2, biochemical and sequence analyses indicate that Tpm2 spans four actin monomers along a filament, whereas Tpm1 spans five. Despite its shorter length, Tpm2 can compete with Tpm1 for binding to F-actin. Over-expression of Tpm2 in vivo alters the axial budding of haploids to a bipolar pattern, and this can be partially suppressed by co-over-expression of Tpm1. This suggests distinct functions for the two tropomyosins, and indicates that the ratio between them is important for correct morphogenesis [].; PDB: 2EFR_A 2Z5H_C 2Z5I_D 2D3E_B 2EFS_D 3U59_B 1C1G_C 1IHQ_A 3AZD_B 1MV4_B ....
Probab=96.78 E-value=0.83 Score=47.16 Aligned_cols=142 Identities=13% Similarity=0.181 Sum_probs=67.6
Q ss_pred hhhHHHHHHHHHhhhhhhhhhhhhHHHHHHHHHHHhhhhhhhhhhhhhhHHHHHHhhHHHHHHHHHHHHHHHHHHhhhhc
Q 006114 119 NAHLELEVEKILGELNHQKDQNNLKREKIVQLEISLKNSKQQQLDNSSYQKVLADTTQMYEKKITELIKQLEIEHARSEG 198 (660)
Q Consensus 119 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~e~~~~~~ 198 (660)
-..++.+++.......+--+....+..+++.||-.|..+.++--....+...+.+.....+..++.|-......-.+...
T Consensus 17 ~~~~~~~l~~~~~~~~~aE~e~~~l~rri~~lE~~le~~eerL~~~~~kL~~~e~~~de~er~~k~lE~r~~~~eeri~~ 96 (237)
T PF00261_consen 17 LEEAEEKLKEAEKRAEKAEAEVASLQRRIQLLEEELERAEERLEEATEKLEEAEKRADESERARKVLENREQSDEERIEE 96 (237)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHCCCCHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHH
Confidence 33344444444555555555666677777777777776666555555555555555544444444444444333333333
Q ss_pred hHHHHHHHHHHHhhhhhhHHHHhhhhhHHHHHHhhHHHHHHHHHHHHhhhhhhhhhhhhhhHHhHHHHHHHhh
Q 006114 199 AEEQVDTMKKLISDNQKSIEQYEMENSTYQKALADTTQLYEKKIAELNKKLEDEHACFEGAVEQLDMVKKLLS 271 (660)
Q Consensus 199 ~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 271 (660)
++.++...+....+... -|.. .+.....-+..+.....+++.=.+++..++++|..+.+-|.
T Consensus 97 lE~~l~ea~~~~ee~e~----------k~~E-~~rkl~~~E~~Le~aEeR~e~~E~ki~eLE~el~~~~~~lk 158 (237)
T PF00261_consen 97 LEQQLKEAKRRAEEAER----------KYEE-VERKLKVLEQELERAEERAEAAESKIKELEEELKSVGNNLK 158 (237)
T ss_dssp CHHHHHHHHHHHHHHHH----------HHHH-CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHH----------HHHH-HHHHHHHHHHHHHHHHHHHhhhchhHHHHHHHHHHHHHHHH
Confidence 44444433333333331 1111 11112233344444444444444444555555555544443
No 125
>PF10174 Cast: RIM-binding protein of the cytomatrix active zone; InterPro: IPR019323 This entry represents a family of proteins that form part of the CAZ (cytomatrix at the active zone) complex which is involved in determining the site of synaptic vesicle fusion []. Located at the C terminus is a PDZ-binding motif that binds directly to RIM (a small G protein Rab-3A effector). These proteins also contain four coiled-coil domains [].
Probab=96.77 E-value=2 Score=51.54 Aligned_cols=240 Identities=23% Similarity=0.250 Sum_probs=107.2
Q ss_pred hhHHHHHHhhhhhhhHHHHhhhhHHHHHHHHHhhhhhhhhhhhhHHHHHHHHHHHhhhhhhhhhhhhhhHH------HHH
Q 006114 99 ISYDESMRNLVTRSEFLEKENAHLELEVEKILGELNHQKDQNNLKREKIVQLEISLKNSKQQQLDNSSYQK------VLA 172 (660)
Q Consensus 99 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~~~ 172 (660)
..|-..+..+..+.+.|+.+.......+..+......-.+...-....+..|+|.+...+..........+ ...
T Consensus 468 e~~~~e~~~lk~~~~~LQ~eLsEk~~~l~~~kee~s~l~s~~~K~~s~i~~l~I~lEk~rek~~kl~~ql~k~~~~~e~~ 547 (775)
T PF10174_consen 468 ETYQKELKELKAKLESLQKELSEKELQLEDAKEEASKLASSQEKKDSEIERLEIELEKKREKHEKLEKQLEKLRANAELR 547 (775)
T ss_pred HHHHHHHHHHHHHHHHHhhhhHHHHHHHHHhhhHHHHHhhccchhhhHHHHHHHHHHHhhhHHHHHHHHHHHHHhCHhhc
Confidence 34444444444444444444444444444444333322222222334567777777666554444333332 345
Q ss_pred HhhHHHHHHHHHHHHHHHHHHhhhhc-------hHHHHHHHHHHHhhhhhhHHHHhhhhhHHHHHHhhHHHH-HHHHHHH
Q 006114 173 DTTQMYEKKITELIKQLEIEHARSEG-------AEEQVDTMKKLISDNQKSIEQYEMENSTYQKALADTTQL-YEKKIAE 244 (660)
Q Consensus 173 ~~~~~~~~~~~~l~~~l~~e~~~~~~-------~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~l~~~~~~-~~~~~~~ 244 (660)
+.++.++.++.+.....+.-.+.-+. |+.+-+......+++++-.......-..|+.+...|... ++++-++
T Consensus 548 ~r~~~Le~ev~~~~ee~~kaq~EVERLl~~L~~~E~EK~~ke~ki~~LekeLek~~~~~~~~~~~~~~~k~~~~~~~~~e 627 (775)
T PF10174_consen 548 DRIQQLEQEVTRYREESEKAQAEVERLLDILREAENEKNDKEKKIGELEKELEKAQMHLAKQQETVEATKIEENKRKRAE 627 (775)
T ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHhccchhhhhhhhhhhhhHHHHHhhhH
Confidence 55666666555554444333322222 222222222223333321111112223444444444333 5666666
Q ss_pred HhhhhhhhhhhhhhhHHhHHHHHHHhhhhhccccchhHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHhhhhccHH
Q 006114 245 LNKKLEDEHACFEGAVEQLDMVKKLLSDYQNSNQGQKEVHELCVKLKETRQLHESAVYEVQTLKSEYKNLLEEKETMSDE 324 (660)
Q Consensus 245 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~Lk~~Le~e~~~~e~~e~E~~~lks~l~~l~~~~~~~~ee 324 (660)
+..-...+ .....+++.|....+- ..+...-...+...++......+.+-.|+..|+.++...+.+-...+.+
T Consensus 628 lleea~Re-e~~~t~e~~l~~s~q~------~~~~~~~~~~~e~qleeL~~~l~k~~~Eld~l~~qL~ssq~~L~e~d~~ 700 (775)
T PF10174_consen 628 LLEEALRE-EVSITEERELAQSQQK------LAQQEAQSSHLEKQLEELEAALEKLRQELDQLKAQLESSQQSLMERDQE 700 (775)
T ss_pred HHHHHHhh-hhhHHHHHHHhhhhhh------hhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHH
Confidence 65554444 2224455555554443 2222233344555555555666666666666666666555433322222
Q ss_pred HHHHHHHHHHHHHHhhhhHHHHHHHHhh
Q 006114 325 LQAARQRLLVEEKQRKAIEYELVKLKKT 352 (660)
Q Consensus 325 l~~~~k~l~~e~~~rkkLe~E~~~l~~~ 352 (660)
|. .+..| +.+--+|+-.++..
T Consensus 701 L~----~le~E---rrk~lEE~l~mKqe 721 (775)
T PF10174_consen 701 LN----ALEAE---RRKQLEEVLEMKQE 721 (775)
T ss_pred HH----HHHHH---HHHHHHHHHHHhhc
Confidence 22 22223 35555666666633
No 126
>KOG0213 consensus Splicing factor 3b, subunit 1 [RNA processing and modification]
Probab=96.77 E-value=0.01 Score=68.27 Aligned_cols=228 Identities=14% Similarity=0.095 Sum_probs=134.6
Q ss_pred HHHHhhCCCCHHHHHHHHHHHHHhhCCchhH--HHHHHcCCHHHHHHHHccCCCHHHHHHHHHHHHHhhcCchhHHHH-H
Q 006114 411 KILQLLTSEDPDVQIHAVKVVANLAAEDINQ--EKIVEEGGLDALLLLLRTSQNTTILRVASGAIANLAMNEMNQGLI-M 487 (660)
Q Consensus 411 ~LV~LL~s~d~~vr~~Aa~aL~nLa~~~en~--~~Ive~GgI~~Lv~LL~~s~d~~v~~~Aa~AL~nLA~~~~n~~~I-v 487 (660)
.++..|++.++.+|..|+..++.|+.--.++ ......-|+ .|..-|. ..+|++.....+||..|...-..-+.. -
T Consensus 803 tiL~rLnnksa~vRqqaadlis~la~Vlktc~ee~~m~~lGv-vLyEylg-eeypEvLgsILgAikaI~nvigm~km~pP 880 (1172)
T KOG0213|consen 803 TILWRLNNKSAKVRQQAADLISSLAKVLKTCGEEKLMGHLGV-VLYEYLG-EEYPEVLGSILGAIKAIVNVIGMTKMTPP 880 (1172)
T ss_pred HHHHHhcCCChhHHHHHHHHHHHHHHHHHhccHHHHHHHhhH-HHHHhcC-cccHHHHHHHHHHHHHHHHhccccccCCC
Confidence 3445678999999999999999887632222 222222222 2445564 678999998888888876431111111 1
Q ss_pred hcCccHHHHHhhcCCCCHHHHHHHHHHHHHHh-cChh---HHHHHHhccHHHHHHHHhcCCCHHHHHHHHHHHHHhhccc
Q 006114 488 SRGGGQLLAKTASKTDDPQTLRMVAGALANLC-GNEK---LHTMLEEDGAIKALLAMVRSGNIDVIAQVARGLANFAKCE 563 (660)
Q Consensus 488 e~g~I~~Ll~LL~~s~d~~v~~~Aa~aLanLa-~~~~---~r~~iv~~G~V~~Lv~lL~s~~~~v~~~Al~aLanLA~~~ 563 (660)
-.|.+|.|..+|++ .+..|+.++...+..+| ..++ .|.-|. .---|+++|.+.+..++.+|..+++.|+..-
T Consensus 881 i~dllPrltPILkn-rheKVqen~IdLvg~IadrgpE~v~aREWMR---IcfeLlelLkahkK~iRRaa~nTfG~IakaI 956 (1172)
T KOG0213|consen 881 IKDLLPRLTPILKN-RHEKVQENCIDLVGTIADRGPEYVSAREWMR---ICFELLELLKAHKKEIRRAAVNTFGYIAKAI 956 (1172)
T ss_pred hhhhcccchHhhhh-hHHHHHHHHHHHHHHHHhcCcccCCHHHHHH---HHHHHHHHHHHHHHHHHHHHHhhhhHHHHhc
Confidence 25678999999975 78899999998888888 2232 222221 2334788888999999999999999998531
Q ss_pred -h-hhhhh--------------cchhhhHHHhh----cChHHHHHHhhcCCCHHHHHHHHHHHHHhhcCC--ccHHHHHh
Q 006114 564 -S-RAIVQ--------------GQRKGRSHLME----DSALEWLIANSKTNSASTRRHVELALCHLAQNE--DNARDFIS 621 (660)
Q Consensus 564 -~-~~~aq--------------~~~e~r~~Li~----~G~v~~Lv~lL~s~d~~vr~~Aa~AL~nLa~~~--e~~~~Ive 621 (660)
| ++++- +...+-..+.+ ..++|.|+.--..+...|+..+..+++.+-..- .....+-.
T Consensus 957 GPqdVLatLlnnLkvqeRq~RvcTtvaIaIVaE~c~pFtVLPalmneYrtPe~nVQnGVLkalsf~FeyigemskdYiya 1036 (1172)
T KOG0213|consen 957 GPQDVLATLLNNLKVQERQNRVCTTVAIAIVAETCGPFTVLPALMNEYRTPEANVQNGVLKALSFMFEYIGEMSKDYIYA 1036 (1172)
T ss_pred CHHHHHHHHHhcchHHHHHhchhhhhhhhhhhhhcCchhhhHHHHhhccCchhHHHHhHHHHHHHHHHHHHHHhhhHHHH
Confidence 1 11100 00111111222 234555554445566777877777777764422 22222221
Q ss_pred cCcHHHHHHHHhcCChHHHHHHHHHH
Q 006114 622 RGGAKELVQISIESSREDIRNLAKKT 647 (660)
Q Consensus 622 ~G~l~~Lv~lL~s~s~~~ir~~A~~~ 647 (660)
+.|.|-..+-+ .+.++|+.|..+
T Consensus 1037 --v~PlleDAlmD-rD~vhRqta~~~ 1059 (1172)
T KOG0213|consen 1037 --VTPLLEDALMD-RDLVHRQTAMNV 1059 (1172)
T ss_pred --hhHHHHHhhcc-ccHHHHHHHHHH
Confidence 34444444443 344577766643
No 127
>PF06160 EzrA: Septation ring formation regulator, EzrA ; InterPro: IPR010379 During the bacterial cell cycle, the tubulin-like cell-division protein FtsZ polymerises into a ring structure that establishes the location of the nascent division site. EzrA modulates the frequency and position of FtsZ ring formation [].; GO: 0000921 septin ring assembly, 0005940 septin ring, 0016021 integral to membrane
Probab=96.76 E-value=1.2 Score=51.87 Aligned_cols=137 Identities=18% Similarity=0.241 Sum_probs=85.4
Q ss_pred hHHHHHHhhHHHHHHHHHHHHHHHHHHhhhhchHHHHHHHHHHHhhhhhhHHHHhhhhhHHHHHHhhHHHHHHHHHHHHh
Q 006114 167 YQKVLADTTQMYEKKITELIKQLEIEHARSEGAEEQVDTMKKLISDNQKSIEQYEMENSTYQKALADTTQLYEKKIAELN 246 (660)
Q Consensus 167 ~~~~~~~~~~~~~~~~~~l~~~l~~e~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~ 246 (660)
....+...+......|..|-..++.|..-+...++....+...+.+.. ..|..+...+....+.|.
T Consensus 272 ~l~~~~~~~~~i~~~Id~lYd~le~E~~Ak~~V~~~~~~l~~~l~~~~-------~~~~~l~~e~~~v~~sY~------- 337 (560)
T PF06160_consen 272 ELDEVEEENEEIEERIDQLYDILEKEVEAKKYVEKNLKELYEYLEHAK-------EQNKELKEELERVSQSYT------- 337 (560)
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHH-------HHHHHHHHHHHHHHHhcC-------
Confidence 344677788899999999999999999999999998888888888888 566666666666666652
Q ss_pred hhhh-hhhhhhhhhHHhHHHHHHHhhhhhccccchhHH-HHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHhhh
Q 006114 247 KKLE-DEHACFEGAVEQLDMVKKLLSDYQNSNQGQKEV-HELCVKLKETRQLHESAVYEVQTLKSEYKNLLEEKE 319 (660)
Q Consensus 247 ~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~-~~Lk~~Le~e~~~~e~~e~E~~~lks~l~~l~~~~~ 319 (660)
|. +|..+..+.++|+..+.+-.-+-+.......-. +.+...++.....-+..+++...+...+..|...+.
T Consensus 338 --L~~~e~~~~~~l~~~l~~l~~~~~~~~~~i~~~~~~yS~i~~~l~~~~~~l~~ie~~q~~~~~~l~~L~~dE~ 410 (560)
T PF06160_consen 338 --LNHNELEIVRELEKQLKELEKRYEDLEERIEEQQVPYSEIQEELEEIEEQLEEIEEEQEEINESLQSLRKDEK 410 (560)
T ss_pred --CCchHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 11 233344444444444333333333222222222 555556666655666666555555555555555444
No 128
>KOG1242 consensus Protein containing adaptin N-terminal region [Translation, ribosomal structure and biogenesis]
Probab=96.76 E-value=0.018 Score=65.44 Aligned_cols=223 Identities=12% Similarity=0.094 Sum_probs=137.8
Q ss_pred CcccchhhhhhcccCCCccccccchhhhhhcCchhHHHHHhCCCHHHH----HHhhCCCCHHHHHHHHHHHHHhhCCchh
Q 006114 365 PYTKDYISKGSSRFGAPMSLQKSNPSRELSGQRATIAKICDEVGLPKI----LQLLTSEDPDVQIHAVKVVANLAAEDIN 440 (660)
Q Consensus 365 ~~~~g~i~~l~~~L~~~~~~vr~~~~~~laa~~~~~~~I~e~ggI~~L----V~LL~s~d~~vr~~Aa~aL~nLa~~~en 440 (660)
|....-++.++.+++|....+|+.+..+.-+ +...+...|++.+ +.-+.........+++..|+.++.....
T Consensus 212 Pyiv~~lp~il~~~~d~~~~Vr~Aa~~a~ka----i~~~~~~~aVK~llpsll~~l~~~kWrtK~aslellg~m~~~ap~ 287 (569)
T KOG1242|consen 212 PYIVPILPSILTNFGDKINKVREAAVEAAKA----IMRCLSAYAVKLLLPSLLGSLLEAKWRTKMASLELLGAMADCAPK 287 (569)
T ss_pred chHHhhHHHHHHHhhccchhhhHHHHHHHHH----HHHhcCcchhhHhhhhhHHHHHHHhhhhHHHHHHHHHHHHHhchH
Confidence 3556678888889999888888875444111 1112333444444 4333333556678899999999888777
Q ss_pred HHHHHHcCCHHHHHHHHccCCCHHHHHHHHHHHHHhhcCchhHHHHHhcCccHHHHHhhcCCCCHHHHHHHHHHHHHHhc
Q 006114 441 QEKIVEEGGLDALLLLLRTSQNTTILRVASGAIANLAMNEMNQGLIMSRGGGQLLAKTASKTDDPQTLRMVAGALANLCG 520 (660)
Q Consensus 441 ~~~Ive~GgI~~Lv~LL~~s~d~~v~~~Aa~AL~nLA~~~~n~~~Ive~g~I~~Ll~LL~~s~d~~v~~~Aa~aLanLa~ 520 (660)
+-...-...||.|...|. ++.++++..+-.+|..++..-+|-.. .-.+|.|+..+.++.. .+ ..+...|..-..
T Consensus 288 qLs~~lp~iiP~lsevl~-DT~~evr~a~~~~l~~~~svidN~dI---~~~ip~Lld~l~dp~~-~~-~e~~~~L~~ttF 361 (569)
T KOG1242|consen 288 QLSLCLPDLIPVLSEVLW-DTKPEVRKAGIETLLKFGSVIDNPDI---QKIIPTLLDALADPSC-YT-PECLDSLGATTF 361 (569)
T ss_pred HHHHHHhHhhHHHHHHHc-cCCHHHHHHHHHHHHHHHHhhccHHH---HHHHHHHHHHhcCccc-ch-HHHHHhhcceee
Confidence 777778889999999997 88999999999999999776444441 1246888888865321 12 122222221110
Q ss_pred ChhHHHHHHhccHHHHHHHH----hcCCCHHHHHHHHHHHHHhhccc--hhhhhhcchhhhHHHhhcChHHHHHHhhcCC
Q 006114 521 NEKLHTMLEEDGAIKALLAM----VRSGNIDVIAQVARGLANFAKCE--SRAIVQGQRKGRSHLMEDSALEWLIANSKTN 594 (660)
Q Consensus 521 ~~~~r~~iv~~G~V~~Lv~l----L~s~~~~v~~~Al~aLanLA~~~--~~~~aq~~~e~r~~Li~~G~v~~Lv~lL~s~ 594 (660)
. ..++.-.+..++.+ +...+..+...++.+++|+|+-- +.+++. .-.-.+|-|-..+.+.
T Consensus 362 ---V--~~V~~psLalmvpiL~R~l~eRst~~kr~t~~IidNm~~LveDp~~lap---------fl~~Llp~lk~~~~d~ 427 (569)
T KOG1242|consen 362 ---V--AEVDAPSLALMVPILKRGLAERSTSIKRKTAIIIDNMCKLVEDPKDLAP---------FLPSLLPGLKENLDDA 427 (569)
T ss_pred ---e--eeecchhHHHHHHHHHHHHhhccchhhhhHHHHHHHHHHhhcCHHHHhh---------hHHHHhhHHHHHhcCC
Confidence 0 11222333444444 44566778899999999999532 211110 0012333444445556
Q ss_pred CHHHHHHHHHHHHHhhc
Q 006114 595 SASTRRHVELALCHLAQ 611 (660)
Q Consensus 595 d~~vr~~Aa~AL~nLa~ 611 (660)
.|.+|..++.||+.+-.
T Consensus 428 ~PEvR~vaarAL~~l~e 444 (569)
T KOG1242|consen 428 VPEVRAVAARALGALLE 444 (569)
T ss_pred ChhHHHHHHHHHHHHHH
Confidence 79999999999987643
No 129
>KOG1242 consensus Protein containing adaptin N-terminal region [Translation, ribosomal structure and biogenesis]
Probab=96.74 E-value=0.055 Score=61.69 Aligned_cols=217 Identities=12% Similarity=0.081 Sum_probs=133.8
Q ss_pred HhCCCHHHHHHhh---CCCCHHHHHHHHHHHHHhhCCchhHHHHHHcCC----HHHHHHHHccCCCHHHHHHHHHHHHHh
Q 006114 404 CDEVGLPKILQLL---TSEDPDVQIHAVKVVANLAAEDINQEKIVEEGG----LDALLLLLRTSQNTTILRVASGAIANL 476 (660)
Q Consensus 404 ~e~ggI~~LV~LL---~s~d~~vr~~Aa~aL~nLa~~~en~~~Ive~Gg----I~~Lv~LL~~s~d~~v~~~Aa~AL~nL 476 (660)
++...+|.+-.+| .+....||..|..+...+.. .+...| +|+++.-+... .=..+..++..|+.+
T Consensus 210 ~EPyiv~~lp~il~~~~d~~~~Vr~Aa~~a~kai~~-------~~~~~aVK~llpsll~~l~~~-kWrtK~aslellg~m 281 (569)
T KOG1242|consen 210 FEPYIVPILPSILTNFGDKINKVREAAVEAAKAIMR-------CLSAYAVKLLLPSLLGSLLEA-KWRTKMASLELLGAM 281 (569)
T ss_pred CCchHHhhHHHHHHHhhccchhhhHHHHHHHHHHHH-------hcCcchhhHhhhhhHHHHHHH-hhhhHHHHHHHHHHH
Confidence 4444444444444 45678899887777755433 112233 34444433312 224566788889988
Q ss_pred hcCchhHHHHHhcCccHHHHHhhcCCCCHHHHHHHHHHHHHHhcChhHHHHHHhccHHHHHHHHhcCCCHHHHHHHHHHH
Q 006114 477 AMNEMNQGLIMSRGGGQLLAKTASKTDDPQTLRMVAGALANLCGNEKLHTMLEEDGAIKALLAMVRSGNIDVIAQVARGL 556 (660)
Q Consensus 477 A~~~~n~~~Ive~g~I~~Ll~LL~~s~d~~v~~~Aa~aLanLa~~~~~r~~iv~~G~V~~Lv~lL~s~~~~v~~~Al~aL 556 (660)
+.+.+.+-...-..+||.+...|.+ .+|.++..+..+|..++..-++-. |. -.+|.|++.+..+...+. .++..|
T Consensus 282 ~~~ap~qLs~~lp~iiP~lsevl~D-T~~evr~a~~~~l~~~~svidN~d-I~--~~ip~Lld~l~dp~~~~~-e~~~~L 356 (569)
T KOG1242|consen 282 ADCAPKQLSLCLPDLIPVLSEVLWD-TKPEVRKAGIETLLKFGSVIDNPD-IQ--KIIPTLLDALADPSCYTP-ECLDSL 356 (569)
T ss_pred HHhchHHHHHHHhHhhHHHHHHHcc-CCHHHHHHHHHHHHHHHHhhccHH-HH--HHHHHHHHHhcCcccchH-HHHHhh
Confidence 8887778888888999999999986 789999999999999984322222 11 257778888865542221 222222
Q ss_pred HHhhccchhhhhhcchhhhHHHhhcC----hHHHHHHhhcCCCHHHHHHHHHHHHHhhcCCccHHHHHh--cCcHHHHHH
Q 006114 557 ANFAKCESRAIVQGQRKGRSHLMEDS----ALEWLIANSKTNSASTRRHVELALCHLAQNEDNARDFIS--RGGAKELVQ 630 (660)
Q Consensus 557 anLA~~~~~~~aq~~~e~r~~Li~~G----~v~~Lv~lL~s~d~~vr~~Aa~AL~nLa~~~e~~~~Ive--~G~l~~Lv~ 630 (660)
+.-++-. .++.- .+|.|.+-+...+..+++.++.++.|+|.--+....+.. .-.+|.|-.
T Consensus 357 ~~ttFV~--------------~V~~psLalmvpiL~R~l~eRst~~kr~t~~IidNm~~LveDp~~lapfl~~Llp~lk~ 422 (569)
T KOG1242|consen 357 GATTFVA--------------EVDAPSLALMVPILKRGLAERSTSIKRKTAIIIDNMCKLVEDPKDLAPFLPSLLPGLKE 422 (569)
T ss_pred cceeeee--------------eecchhHHHHHHHHHHHHhhccchhhhhHHHHHHHHHHhhcCHHHHhhhHHHHhhHHHH
Confidence 2211100 01122 344444555556788999999999999974433333322 236777777
Q ss_pred HHhcCChHHHHHHHHHHH
Q 006114 631 ISIESSREDIRNLAKKTM 648 (660)
Q Consensus 631 lL~s~s~~~ir~~A~~~L 648 (660)
.+... .+..|..|.+.|
T Consensus 423 ~~~d~-~PEvR~vaarAL 439 (569)
T KOG1242|consen 423 NLDDA-VPEVRAVAARAL 439 (569)
T ss_pred HhcCC-ChhHHHHHHHHH
Confidence 77776 567778777777
No 130
>COG5369 Uncharacterized conserved protein [Function unknown]
Probab=96.71 E-value=0.0099 Score=66.42 Aligned_cols=188 Identities=13% Similarity=0.082 Sum_probs=136.2
Q ss_pred HHHHHHHHhhCC-chhHHHHHHcCCHHHHHHHHccCCCHHHHHHHHHHHHHhhcC-chhHHHHHhcCccHHHHHhhcCCC
Q 006114 426 HAVKVVANLAAE-DINQEKIVEEGGLDALLLLLRTSQNTTILRVASGAIANLAMN-EMNQGLIMSRGGGQLLAKTASKTD 503 (660)
Q Consensus 426 ~Aa~aL~nLa~~-~en~~~Ive~GgI~~Lv~LL~~s~d~~v~~~Aa~AL~nLA~~-~~n~~~Ive~g~I~~Ll~LL~~s~ 503 (660)
+++-.|..++.+ ...|....+...+.+|+.+|. .|+..+..-+.++++|+... ...+..+...|+|..|+.++. +.
T Consensus 408 a~~l~LkS~SrSV~~LRTgL~d~~I~elLi~~Ls-~Peimi~~~~t~~icn~vv~fsnL~~~fL~~~iIdvl~~~v~-sK 485 (743)
T COG5369 408 AIVLFLKSMSRSVTFLRTGLLDYPIVELLIDALS-NPEIMIEFPDTIDICNKVVPFSNLGAGFLEKSIIDVLVNLVM-SK 485 (743)
T ss_pred HHHHHHHHhhHHHHHHHhhccccchHHHHHHHhc-CccceeeccchhhhhheeeeccchHHHHHHhhHHHHHHHHhh-cc
Confidence 334444455553 344777778888999999997 66766777788999998765 777889999999999999997 46
Q ss_pred CHHHHHHHHHHHHHHhcChh--HHHHHHhccHHHHHHHHhcCCCHHHHHHHHHHHHHhhccchhhhhhcchhhhHHHhhc
Q 006114 504 DPQTLRMVAGALANLCGNEK--LHTMLEEDGAIKALLAMVRSGNIDVIAQVARGLANFAKCESRAIVQGQRKGRSHLMED 581 (660)
Q Consensus 504 d~~v~~~Aa~aLanLa~~~~--~r~~iv~~G~V~~Lv~lL~s~~~~v~~~Al~aLanLA~~~~~~~aq~~~e~r~~Li~~ 581 (660)
|..++....|+++.+..+.. -+-.+...-|+..++++...+.-.|+..++.+|.|+.- ++. ........++..
T Consensus 486 DdaLqans~wvlrHlmyncq~~ekf~~Lakig~~kvl~~~NDpc~~vq~q~lQilrNftc-~~~----knEkskdv~~K~ 560 (743)
T COG5369 486 DDALQANSEWVLRHLMYNCQKNEKFKFLAKIGVEKVLSYTNDPCFKVQHQVLQILRNFTC-DTS----KNEKSKDVFIKA 560 (743)
T ss_pred hhhhhhcchhhhhhhhhcCcchhhhhhHHhcCHHHHHHHhcCcccccHHHHHHHHHhccc-ccc----cccccceeEEec
Confidence 77899999999999984433 33345667788999999999999999999999999983 221 011222223221
Q ss_pred C----hHHHHHHhhcCCCHHHHHHHHHHHHHhhcCCccHHHHH
Q 006114 582 S----ALEWLIANSKTNSASTRRHVELALCHLAQNEDNARDFI 620 (660)
Q Consensus 582 G----~v~~Lv~lL~s~d~~vr~~Aa~AL~nLa~~~e~~~~Iv 620 (660)
. ....|+..+...+|-.-...++.|.+++...++...++
T Consensus 561 ~p~~ylfk~l~~k~e~~np~~i~~~~yilv~~aa~d~~l~~~V 603 (743)
T COG5369 561 TPRRYLFKRLIDKYEENNPMEILEGCYILVRNAACDDTLDYIV 603 (743)
T ss_pred ChHHHHHHHHHHHHHhcCchhhhhhHHHHHHHHhccchHHHHH
Confidence 1 34456666666777766667999999987666555555
No 131
>PF05701 WEMBL: Weak chloroplast movement under blue light; InterPro: IPR008545 This family consists of several plant proteins of unknown function. Several sequences in this family are described as being myosin heavy chain-like.
Probab=96.70 E-value=1.8 Score=49.94 Aligned_cols=46 Identities=20% Similarity=0.253 Sum_probs=26.4
Q ss_pred HHHHHHHhhHHHHHHhh---hhhhhHHHHHHHHHHHHhhHHHHHhhHHH
Q 006114 22 LETQVDHLTAEIERKQK---LRENDKCELEKLLRECQISYDEAKDNLVT 67 (660)
Q Consensus 22 ~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 67 (660)
+++||+.+-.++.+-++ ..|.+|...-+.|......-+++..+|+.
T Consensus 32 ~e~eL~~~qeel~~~k~~l~~~E~~k~~~l~ELe~akr~veel~~kLe~ 80 (522)
T PF05701_consen 32 KETELEKAQEELAKLKEQLEAAEREKAQALSELESAKRTVEELKLKLEK 80 (522)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 66777776644444333 34445555555555566666666666654
No 132
>KOG4413 consensus 26S proteasome regulatory complex, subunit PSMD5 [Posttranslational modification, protein turnover, chaperones]
Probab=96.69 E-value=0.14 Score=54.47 Aligned_cols=170 Identities=17% Similarity=0.162 Sum_probs=133.2
Q ss_pred HhhCCCCHHHHHHHHHHHHHhhC-Cchh----HHHHHHcCCHHHHHHHHccCCCHHHHHHHHHHHHHhhcCchhHHHHHh
Q 006114 414 QLLTSEDPDVQIHAVKVVANLAA-EDIN----QEKIVEEGGLDALLLLLRTSQNTTILRVASGAIANLAMNEMNQGLIMS 488 (660)
Q Consensus 414 ~LL~s~d~~vr~~Aa~aL~nLa~-~~en----~~~Ive~GgI~~Lv~LL~~s~d~~v~~~Aa~AL~nLA~~~~n~~~Ive 488 (660)
.-|..++..|+.-+|+.++-|.. .+.| ...++++|.++.++..+. +.|.+|...|...|..|+..|.....|..
T Consensus 89 rGLiaddasVKiLackqigcilEdcDtnaVseillvvNaeilklildcIg-geddeVAkAAiesikrialfpaaleaiFe 167 (524)
T KOG4413|consen 89 RGLIADDASVKILACKQIGCILEDCDTNAVSEILLVVNAEILKLILDCIG-GEDDEVAKAAIESIKRIALFPAALEAIFE 167 (524)
T ss_pred hcccCCcchhhhhhHhhhhHHHhcCchhhHHHHHHHhhhhHHHHHHHHHc-CCcHHHHHHHHHHHHHHHhcHHHHHHhcc
Confidence 34457888999999999988777 3433 234557888999999997 77888999999999999999999999998
Q ss_pred cCccHH--HHHhhcCCCCHHHHHHHHHHHHHHh-cChhHHHHHHhccHHHHHHHHhcC-CCHHHHHHHHHHHHHhhccch
Q 006114 489 RGGGQL--LAKTASKTDDPQTLRMVAGALANLC-GNEKLHTMLEEDGAIKALLAMVRS-GNIDVIAQVARGLANFAKCES 564 (660)
Q Consensus 489 ~g~I~~--Ll~LL~~s~d~~v~~~Aa~aLanLa-~~~~~r~~iv~~G~V~~Lv~lL~s-~~~~v~~~Al~aLanLA~~~~ 564 (660)
....+. +.++... .+.-++..+...|..+. .+|.........|.+..|..-|+. .+.-|+..++.....|+..
T Consensus 168 SellDdlhlrnlaak-cndiaRvRVleLIieifSiSpesaneckkSGLldlLeaElkGteDtLVianciElvteLaet-- 244 (524)
T KOG4413|consen 168 SELLDDLHLRNLAAK-CNDIARVRVLELIIEIFSISPESANECKKSGLLDLLEAELKGTEDTLVIANCIELVTELAET-- 244 (524)
T ss_pred cccCChHHHhHHHhh-hhhHHHHHHHHHHHHHHhcCHHHHhHhhhhhHHHHHHHHhcCCcceeehhhHHHHHHHHHHH--
Confidence 777655 3344433 34456666777777775 778888888899999999888886 6777888899888888843
Q ss_pred hhhhhcchhhhHHHhhcChHHHHHHhhcCC
Q 006114 565 RAIVQGQRKGRSHLMEDSALEWLIANSKTN 594 (660)
Q Consensus 565 ~~~aq~~~e~r~~Li~~G~v~~Lv~lL~s~ 594 (660)
..+|.++...|.++.+...+...
T Consensus 245 -------eHgreflaQeglIdlicnIIsGa 267 (524)
T KOG4413|consen 245 -------EHGREFLAQEGLIDLICNIISGA 267 (524)
T ss_pred -------hhhhhhcchhhHHHHHHHHhhCC
Confidence 46888899999999999887653
No 133
>PF12348 CLASP_N: CLASP N terminal; InterPro: IPR024395 This domain is found in the N-terminal region of CLIP-associated proteins (CLASPs), which are widely conserved microtubule plus-end-tracking proteins that regulate the stability of dynamic microtubules [, ]. The domain is also found in other proteins involved in microtubule binding, including STU1, MOR1 and spindle pole body component Alp14.; PDB: 2QK2_A.
Probab=96.66 E-value=0.017 Score=58.49 Aligned_cols=174 Identities=14% Similarity=0.078 Sum_probs=99.9
Q ss_pred cCCCHHHHHHHHHHHHHhhcCc---hhHHHHHh--cCccHHHHHhhcCCCCHHHHHHHHHHHHHHhcChhHHHHHHhccH
Q 006114 459 TSQNTTILRVASGAIANLAMNE---MNQGLIMS--RGGGQLLAKTASKTDDPQTLRMVAGALANLCGNEKLHTMLEEDGA 533 (660)
Q Consensus 459 ~s~d~~v~~~Aa~AL~nLA~~~---~n~~~Ive--~g~I~~Ll~LL~~s~d~~v~~~Aa~aLanLa~~~~~r~~iv~~G~ 533 (660)
++.|=..+..|..-|..+..+. .....++. ...++.+...+.+ ..+.+...|+.+|..|+..-...-.-.-...
T Consensus 17 ~~~~W~~r~~al~~L~~l~~~~~~~~~~~~~~~~l~~~~~~i~~~l~d-~Rs~v~~~A~~~l~~l~~~l~~~~~~~~~~~ 95 (228)
T PF12348_consen 17 SESDWEERVEALQKLRSLIKGNAPEDFPPDFVECLRQLLDAIIKQLSD-LRSKVSKTACQLLSDLARQLGSHFEPYADIL 95 (228)
T ss_dssp T-SSHHHHHHHHHHHHHHHHH-B-----HHHHHHHH---HHHHH-S-H-H---HHHHHHHHHHHHHHHHGGGGHHHHHHH
T ss_pred CccCHHHHHHHHHHHHHHHHcCCccccHHHHHHHHHHhHHHHHHHHhh-hHHHHHHHHHHHHHHHHHHHhHhHHHHHHHH
Confidence 3456666777777777776543 33333332 2455666666654 4567888999999988833222222223467
Q ss_pred HHHHHHHhcCCCHHHHHHHHHHHHHhhccchhhhhhcchhhhHHHhhcCh-HHHHHHhhcCCCHHHHHHHHHHHHHhhcC
Q 006114 534 IKALLAMVRSGNIDVIAQVARGLANFAKCESRAIVQGQRKGRSHLMEDSA-LEWLIANSKTNSASTRRHVELALCHLAQN 612 (660)
Q Consensus 534 V~~Lv~lL~s~~~~v~~~Al~aLanLA~~~~~~~aq~~~e~r~~Li~~G~-v~~Lv~lL~s~d~~vr~~Aa~AL~nLa~~ 612 (660)
+|.|+..+.++...++..|..+|..++...+ ....+ ++.+...+.+.++.+|..++..|..+...
T Consensus 96 l~~Ll~~~~~~~~~i~~~a~~~L~~i~~~~~--------------~~~~~~~~~l~~~~~~Kn~~vR~~~~~~l~~~l~~ 161 (228)
T PF12348_consen 96 LPPLLKKLGDSKKFIREAANNALDAIIESCS--------------YSPKILLEILSQGLKSKNPQVREECAEWLAIILEK 161 (228)
T ss_dssp HHHHHHGGG---HHHHHHHHHHHHHHHTTS---------------H--HHHHHHHHHHTT-S-HHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHccccHHHHHHHHHHHHHHHHHCC--------------cHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHH
Confidence 8999999999999999999999999885432 01123 56677778899999999999988888543
Q ss_pred Cc-cHHHHHh----cCcHHHHHHHHhcCChHHHHHHHHHHH
Q 006114 613 ED-NARDFIS----RGGAKELVQISIESSREDIRNLAKKTM 648 (660)
Q Consensus 613 ~e-~~~~Ive----~G~l~~Lv~lL~s~s~~~ir~~A~~~L 648 (660)
-. ....+.. ...++.+...+.+ ..+.+|..|+.++
T Consensus 162 ~~~~~~~l~~~~~~~~l~~~l~~~l~D-~~~~VR~~Ar~~~ 201 (228)
T PF12348_consen 162 WGSDSSVLQKSAFLKQLVKALVKLLSD-ADPEVREAARECL 201 (228)
T ss_dssp -----GGG--HHHHHHHHHHHHHHHTS-S-HHHHHHHHHHH
T ss_pred ccchHhhhcccchHHHHHHHHHHHCCC-CCHHHHHHHHHHH
Confidence 22 2222222 3366777777765 4456777777655
No 134
>PF09759 Atx10homo_assoc: Spinocerebellar ataxia type 10 protein domain; InterPro: IPR019156 This is the conserved C-terminal 100 residues of Ataxin-10. Ataxin-10 belongs to the family of armadillo repeat proteins and in solution it tends to form homotrimeric complexes, which associate via a tip-to-tip association in a horseshoe-shaped contact with the concave sides of the molecules facing each other. This domain may represent the homo-association site since that is located near the C terminus of Ataxin-10. The protein does not contain a signal sequence for secretion or any subcellular compartment confirming its cytoplasmic localisation, specifically to the olivocerebellar region [].
Probab=96.65 E-value=0.0078 Score=54.00 Aligned_cols=66 Identities=26% Similarity=0.319 Sum_probs=56.2
Q ss_pred HHHHHHHHHHhhcC-chhHHHHHhcCccHHHHHhhc-CCCCHHHHHHHHHHHHHHh-cChhHHHHHHhc
Q 006114 466 LRVASGAIANLAMN-EMNQGLIMSRGGGQLLAKTAS-KTDDPQTLRMVAGALANLC-GNEKLHTMLEED 531 (660)
Q Consensus 466 ~~~Aa~AL~nLA~~-~~n~~~Ive~g~I~~Ll~LL~-~s~d~~v~~~Aa~aLanLa-~~~~~r~~iv~~ 531 (660)
+.....+|+||+.. +.+++.+.+.||||.++.... +..+|.++..|.+||.||+ .+++++..+.+.
T Consensus 3 K~~lvrlianl~~~~~~~Qd~vr~~~Gi~liL~~c~iD~~nP~irEwai~aiRnL~e~n~eNQ~~I~~L 71 (102)
T PF09759_consen 3 KRDLVRLIANLCYKNKEVQDLVRELGGIPLILSCCNIDDHNPFIREWAIFAIRNLCEGNPENQEFIAQL 71 (102)
T ss_pred HHHHHHHHHHHHhCCHHHHHHHHHcCChHHHHHhcCCCcccHHHHHHHHHHHHHHHhCCHHHHHHHHhc
Confidence 55678899999976 999999999999999988654 4578999999999999999 788888877654
No 135
>PF13513 HEAT_EZ: HEAT-like repeat; PDB: 2Z5J_A 2OT8_B 2Z5O_A 2H4M_A 2QMR_A 1QBK_B 2Z5M_A 2Z5K_A 2Z5N_A 1GCJ_B ....
Probab=96.65 E-value=0.0031 Score=49.46 Aligned_cols=55 Identities=25% Similarity=0.211 Sum_probs=43.6
Q ss_pred HHHHHHHHHHHHHhhCCchhHHHHHHcCCHHHHHHHHccCCCHHHHHHHHHHHHHh
Q 006114 421 PDVQIHAVKVVANLAAEDINQEKIVEEGGLDALLLLLRTSQNTTILRVASGAIANL 476 (660)
Q Consensus 421 ~~vr~~Aa~aL~nLa~~~en~~~Ive~GgI~~Lv~LL~~s~d~~v~~~Aa~AL~nL 476 (660)
+.+|..|+++|++++........-.-...+|.|+.+|. ++++.|+..|+++|++|
T Consensus 1 p~vR~~A~~aLg~l~~~~~~~~~~~~~~~~~~L~~~L~-d~~~~VR~~A~~aLg~l 55 (55)
T PF13513_consen 1 PRVRRAAAWALGRLAEGCPELLQPYLPELLPALIPLLQ-DDDDSVRAAAAWALGNL 55 (55)
T ss_dssp HHHHHHHHHHHHCTTTTTHHHHHHHHHHHHHHHHHHTT-SSSHHHHHHHHHHHHCH
T ss_pred CHHHHHHHHHHhhHhcccHHHHHHHHHHHHHHHHHHHc-CCCHHHHHHHHHHHhcC
Confidence 46899999999999875444333344557999999997 67779999999999875
No 136
>KOG2023 consensus Nuclear transport receptor Karyopherin-beta2/Transportin (importin beta superfamily) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=96.58 E-value=0.027 Score=64.47 Aligned_cols=176 Identities=13% Similarity=0.063 Sum_probs=123.5
Q ss_pred cCCHHHHHHHHccCCCHHHHHHHHHHHHHhhcCc-hh-HHHHHh---cCccHHHHHhhcCCCCHHHHHHHHHHHHHHhcC
Q 006114 447 EGGLDALLLLLRTSQNTTILRVASGAIANLAMNE-MN-QGLIMS---RGGGQLLAKTASKTDDPQTLRMVAGALANLCGN 521 (660)
Q Consensus 447 ~GgI~~Lv~LL~~s~d~~v~~~Aa~AL~nLA~~~-~n-~~~Ive---~g~I~~Ll~LL~~s~d~~v~~~Aa~aLanLa~~ 521 (660)
..++|.|..+|. ++|....+.|.+||..++.+. .. ...+.. .-.||.++.+.++ ++|.++..|.+++-.....
T Consensus 127 pelLp~L~~~L~-s~d~n~~EgA~~AL~KIcEDsa~~lds~~~~rpl~~mipkfl~f~~h-~spkiRs~A~~cvNq~i~~ 204 (885)
T KOG2023|consen 127 PELLPQLCELLD-SPDYNTCEGAFGALQKICEDSAQFLDSDVLTRPLNIMIPKFLQFFKH-PSPKIRSHAVGCVNQFIII 204 (885)
T ss_pred hhHHHHHHHHhc-CCcccccchhHHHHHHHHhhhHHHHhhhcccCchHHhHHHHHHHHhC-CChhHHHHHHhhhhheeec
Confidence 557999999997 888888999999999998762 21 111111 1247888888875 7999999999988776532
Q ss_pred hhHHHHHHhccHHHHHHHHhcCCCHHHHHHHHHHHHHhhccchhhhhhcchhhhHHHhhcChHHHHHHhhcCCCHHHHHH
Q 006114 522 EKLHTMLEEDGAIKALLAMVRSGNIDVIAQVARGLANFAKCESRAIVQGQRKGRSHLMEDSALEWLIANSKTNSASTRRH 601 (660)
Q Consensus 522 ~~~r~~iv~~G~V~~Lv~lL~s~~~~v~~~Al~aLanLA~~~~~~~aq~~~e~r~~Li~~G~v~~Lv~lL~s~d~~vr~~ 601 (660)
..-.-...=...+..+..+....+|+|+.+.|.++..|-...++. -.-.-.+++..++....+.|..|--.
T Consensus 205 ~~qal~~~iD~Fle~lFalanD~~~eVRk~vC~alv~Llevr~dk---------l~phl~~IveyML~~tqd~dE~VALE 275 (885)
T KOG2023|consen 205 QTQALYVHIDKFLEILFALANDEDPEVRKNVCRALVFLLEVRPDK---------LVPHLDNIVEYMLQRTQDVDENVALE 275 (885)
T ss_pred CcHHHHHHHHHHHHHHHHHccCCCHHHHHHHHHHHHHHHHhcHHh---------cccchHHHHHHHHHHccCcchhHHHH
Confidence 222112222356677777778899999999999999987543321 11122577888888888899999999
Q ss_pred HHHHHHHhhcCCccHHHHHh--cCcHHHHHHHHh
Q 006114 602 VELALCHLAQNEDNARDFIS--RGGAKELVQISI 633 (660)
Q Consensus 602 Aa~AL~nLa~~~e~~~~Ive--~G~l~~Lv~lL~ 633 (660)
||.....+|..+.....+.. ...+|.|++-+.
T Consensus 276 ACEFwla~aeqpi~~~~L~p~l~kliPvLl~~M~ 309 (885)
T KOG2023|consen 276 ACEFWLALAEQPICKEVLQPYLDKLIPVLLSGMV 309 (885)
T ss_pred HHHHHHHHhcCcCcHHHHHHHHHHHHHHHHccCc
Confidence 99999999988855444443 345666655443
No 137
>KOG4593 consensus Mitotic checkpoint protein MAD1 [Cell cycle control, cell division, chromosome partitioning]
Probab=96.57 E-value=2.3 Score=49.59 Aligned_cols=145 Identities=21% Similarity=0.201 Sum_probs=93.6
Q ss_pred hHHHHHH---HHHHHhhHHHHHHhhhhhhhHHHHhhhhHHHHHHHHHhhhhhhhhhhhhHHHHHHHHHHHhhhhhhhhhh
Q 006114 87 KYEFEKQ---LRESQISYDESMRNLVTRSEFLEKENAHLELEVEKILGELNHQKDQNNLKREKIVQLEISLKNSKQQQLD 163 (660)
Q Consensus 87 ~~~~e~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 163 (660)
+.++++. +...++.|+.++-.+...---....-+++..++.+..+.+..+........+++....-+|.+..++.-.
T Consensus 146 ~~e~~~k~ae~~~lr~k~dss~s~~q~e~~~~~~~~~~~~s~l~~~eke~~~~~~ql~~~~q~~~~~~~~l~e~~~~~qq 225 (716)
T KOG4593|consen 146 LREKEDKLAELGTLRNKLDSSLSELQWEVMLQEMRAKRLHSELQNEEKELDRQHKQLQEENQKIQELQASLEERADHEQQ 225 (716)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5566664 5667889999988888887788888888888888888888777776666666666666666555443222
Q ss_pred hh-------------hhHHHHHHhhHHHHHHHHHHHHHHHHHHh------hhhchHHHHHHHHHHHhhhhhhHHHH---h
Q 006114 164 NS-------------SYQKVLADTTQMYEKKITELIKQLEIEHA------RSEGAEEQVDTMKKLISDNQKSIEQY---E 221 (660)
Q Consensus 164 ~~-------------~~~~~~~~~~~~~~~~~~~l~~~l~~e~~------~~~~~~~~~~~l~~~l~~~~~~~~~~---~ 221 (660)
|. +-.+..++.+|.++..+..+...-+.-+. -...+-+|+..|+..++.+-+.+.++ +
T Consensus 226 ~a~~~~ql~~~~ele~i~~~~~dqlqel~~l~~a~~q~~ee~~~~re~~~tv~~LqeE~e~Lqskl~~~~~l~~~~~~LE 305 (716)
T KOG4593|consen 226 NAELEQQLSLSEELEAINKNMKDQLQELEELERALSQLREELATLRENRETVGLLQEELEGLQSKLGRLEKLQSTLLGLE 305 (716)
T ss_pred HhhHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHhhHH
Confidence 11 11225566677666666555544443332 22445667777777777666655543 5
Q ss_pred hhhhHHHHHH
Q 006114 222 MENSTYQKAL 231 (660)
Q Consensus 222 ~~~~~~~~~l 231 (660)
++|.-|...|
T Consensus 306 LeN~~l~tkL 315 (716)
T KOG4593|consen 306 LENEDLLTKL 315 (716)
T ss_pred HHHHHHHHHH
Confidence 6777666554
No 138
>PRK01156 chromosome segregation protein; Provisional
Probab=96.55 E-value=3.2 Score=50.98 Aligned_cols=16 Identities=6% Similarity=0.200 Sum_probs=7.3
Q ss_pred hHHHHHHHHHHHHHhh
Q 006114 15 YESLCRKLETQVDHLT 30 (660)
Q Consensus 15 ~~~~~~~~~~~~~~~~ 30 (660)
|+.-..+++.++..+-
T Consensus 303 ~~~~l~~l~~~l~~l~ 318 (895)
T PRK01156 303 YKNDIENKKQILSNID 318 (895)
T ss_pred HHHHHHHHHHHHHHHH
Confidence 3444444455444444
No 139
>KOG4643 consensus Uncharacterized coiled-coil protein [Function unknown]
Probab=96.54 E-value=2.2 Score=51.46 Aligned_cols=184 Identities=15% Similarity=0.088 Sum_probs=95.9
Q ss_pred HHHHHHHHHhhHHHH---HHhhhhhhhHHHHhhhhHHHHHHHHHhhhhhhhhhhhhHHHHH---HHHHHHhhhhhhhhhh
Q 006114 90 FEKQLRESQISYDES---MRNLVTRSEFLEKENAHLELEVEKILGELNHQKDQNNLKREKI---VQLEISLKNSKQQQLD 163 (660)
Q Consensus 90 ~e~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~ 163 (660)
|+++-...++.|.+. .-+|...+..|..|+..|..|++-...-...+.-.+....+.. .|++-......++--.
T Consensus 413 Ls~k~e~Leeri~ql~qq~~eled~~K~L~~E~ekl~~e~~t~~~s~~rq~~e~e~~~q~ls~~~Q~~~et~el~~~ikn 492 (1195)
T KOG4643|consen 413 LSKKHEILEERINQLLQQLAELEDLEKKLQFELEKLLEETSTVTRSLSRQSLENEELDQLLSLQDQLEAETEELLNQIKN 492 (1195)
T ss_pred HhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 444444444444433 2344555556666777777776666555544433332222211 1222222222222112
Q ss_pred hhhhHHHHHHhhHHHHHHHHHHHHHHHHHHhhhhchHHHHHHHHHHHhhhhhhHHHHhhhhhHHHHHHhhHHHHHHHHHH
Q 006114 164 NSSYQKVLADTTQMYEKKITELIKQLEIEHARSEGAEEQVDTMKKLISDNQKSIEQYEMENSTYQKALADTTQLYEKKIA 243 (660)
Q Consensus 164 ~~~~~~~~~~~~~~~~~~~~~l~~~l~~e~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ 243 (660)
.++.....++.+.++.-.+.+++.|+...--.++....++..|...++.+. .||-.+.+.+.--... .-+++
T Consensus 493 lnk~L~~r~~elsrl~a~~~elkeQ~kt~~~qye~~~~k~eeLe~~l~~lE-------~ENa~LlkqI~~Lk~t-~qn~~ 564 (1195)
T KOG4643|consen 493 LNKSLNNRDLELSRLHALKNELKEQYKTCDIQYELLSNKLEELEELLGNLE-------EENAHLLKQIQSLKTT-SQNGA 564 (1195)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHH-------HHHHHHHHHHHHHHHH-hHHHH
Confidence 234444556666666666666666666666666666666666666666666 6777777666533333 33333
Q ss_pred HHhhhhhhhhhhhhhhHHhHHHHHHHhhhhhccccchhHHHHHHHHHHHHHHHHHhHHHHHH
Q 006114 244 ELNKKLEDEHACFEGAVEQLDMVKKLLSDYQNSNQGQKEVHELCVKLKETRQLHESAVYEVQ 305 (660)
Q Consensus 244 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~Lk~~Le~e~~~~e~~e~E~~ 305 (660)
-|.+-.+ +. -....|...|=..|...+.+++++|.++.
T Consensus 565 ~LEq~~n----~l--------------------E~~~~elkk~idaL~alrrhke~LE~e~m 602 (1195)
T KOG4643|consen 565 LLEQNNN----DL--------------------ELIHNELKKYIDALNALRRHKEKLEEEIM 602 (1195)
T ss_pred HHHHhhh----HH--------------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 3333222 22 22344455666677778888888887763
No 140
>PHA02562 46 endonuclease subunit; Provisional
Probab=96.53 E-value=0.61 Score=53.81 Aligned_cols=61 Identities=16% Similarity=0.218 Sum_probs=32.9
Q ss_pred HHHHHHHHHhhHHHHHHhhhhhhhHHHHhhhhHHHHHHHHHhhhhhhhhhhhhHHHHHHHH
Q 006114 90 FEKQLRESQISYDESMRNLVTRSEFLEKENAHLELEVEKILGELNHQKDQNNLKREKIVQL 150 (660)
Q Consensus 90 ~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 150 (660)
+++.+..++..+...+..+.+.++.+..+...++.++..+...+..-........+.+..+
T Consensus 200 ~~~~i~~~~~~~~~~i~~l~~e~~~l~~~~~~l~~~l~~l~~~i~~l~~~i~~~~~~L~~l 260 (562)
T PHA02562 200 YNKNIEEQRKKNGENIARKQNKYDELVEEAKTIKAEIEELTDELLNLVMDIEDPSAALNKL 260 (562)
T ss_pred HHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccHHHHHHHH
Confidence 3344445555555556666666666666666666666666666644443333333333333
No 141
>PF13764 E3_UbLigase_R4: E3 ubiquitin-protein ligase UBR4
Probab=96.53 E-value=0.18 Score=60.32 Aligned_cols=249 Identities=18% Similarity=0.176 Sum_probs=149.7
Q ss_pred HHhCCCHHHHHHhhCC-----CCHHHHHHHHHHHHHhhCCchhHHHHHHcCCHHHHHHHHc---cCCC----HHHHHHHH
Q 006114 403 ICDEVGLPKILQLLTS-----EDPDVQIHAVKVVANLAAEDINQEKIVEEGGLDALLLLLR---TSQN----TTILRVAS 470 (660)
Q Consensus 403 I~e~ggI~~LV~LL~s-----~d~~vr~~Aa~aL~nLa~~~en~~~Ive~GgI~~Lv~LL~---~s~d----~~v~~~Aa 470 (660)
+.+.||+..|+.++.+ .+.......+.+|..++..+.||..+...|+++.|+..|. ..+. +.+.+...
T Consensus 113 ~~~~gGL~~ll~~l~~~~~~~~~~~ll~~llkLL~~c~Kv~~NR~~Ll~~~al~~LL~~L~~~l~~~~~~~~~~i~E~LL 192 (802)
T PF13764_consen 113 LAECGGLEVLLSRLDSIRDFSRGRELLQVLLKLLRYCCKVKVNRRALLELNALNRLLSVLNRALQANQNSSQAEIAEQLL 192 (802)
T ss_pred hhcCCCHHHHHHHHHhhccccCcHHHHHHHHHHHHHHHhhHHHHHHHHHcCCHHHHHHHHHHHHhCccccccchHHHHHH
Confidence 4568999999999974 3456667788888889999999999999999999998885 2323 45666666
Q ss_pred HHHHHhhcCchhHHHH-----Hhc--------CccHHHHHhhcCC---CCHHHHHHHHHHHHHHh-cChhHHHHHHhccH
Q 006114 471 GAIANLAMNEMNQGLI-----MSR--------GGGQLLAKTASKT---DDPQTLRMVAGALANLC-GNEKLHTMLEEDGA 533 (660)
Q Consensus 471 ~AL~nLA~~~~n~~~I-----ve~--------g~I~~Ll~LL~~s---~d~~v~~~Aa~aLanLa-~~~~~r~~iv~~G~ 533 (660)
.++..|.........- ... .-|..|+..+..+ .++.+....+..|-+|+ ++++.-..+++.
T Consensus 193 ~IiE~ll~ea~~~~~~~~~~~~~~~~~~~~~~~~v~~lL~~l~s~~~r~~~~i~~~l~RiLP~Lt~G~~e~m~~Lv~~-- 270 (802)
T PF13764_consen 193 EIIESLLSEANSSSSSESKSSSSLSGSEEQDKEQVEMLLERLNSPFVRSNPQILQALARILPFLTYGNEEKMDALVEH-- 270 (802)
T ss_pred HHHHHHHHHHhhhhhhhccccccccccccccHHHHHHHHHHhcCccccCCHHHHHHHHHHhhHHhcCCHHHHHHHHHH--
Confidence 6666554332111110 111 1266666666542 46888888999999998 444444444432
Q ss_pred HHHHHHH--hc---CCCHHHHHHHHHHHHHhhccchhhhhhcchhhhHHHhhcChHHHHHHhhcCC--------CHHHH-
Q 006114 534 IKALLAM--VR---SGNIDVIAQVARGLANFAKCESRAIVQGQRKGRSHLMEDSALEWLIANSKTN--------SASTR- 599 (660)
Q Consensus 534 V~~Lv~l--L~---s~~~~v~~~Al~aLanLA~~~~~~~aq~~~e~r~~Li~~G~v~~Lv~lL~s~--------d~~vr- 599 (660)
+.+.+.+ ++ .++.. ..+.+++.|+..=+... .....+..+++.|++...+.++... ++...
T Consensus 271 F~p~l~f~~~D~~~~~~~~---~~Le~F~~i~~~I~~~~--~G~~LK~~Il~~GIv~~a~~YL~~~~P~~~~~~s~eWk~ 345 (802)
T PF13764_consen 271 FKPYLDFDKFDEEHSPDEQ---FKLECFCEIAEGIPNNS--NGNRLKDKILESGIVQDAIDYLLKHFPSLKNTDSPEWKE 345 (802)
T ss_pred HHHhcChhhcccccCchHH---HHHHHHHHHHhcCCCCC--chHHHHHHHHHhhHHHHHHHHHHHhCcccccCCCHHHHH
Confidence 2222221 11 11222 23445555543322110 1135688899999999888776542 22222
Q ss_pred -------HHHHHHHHHhhcCCccHHHHHhcCcHHHHHHHHhcCChHH---HHHHHHHHHhcCcchhhhh
Q 006114 600 -------RHVELALCHLAQNEDNARDFISRGGAKELVQISIESSRED---IRNLAKKTMKSNPRLQADT 658 (660)
Q Consensus 600 -------~~Aa~AL~nLa~~~e~~~~Ive~G~l~~Lv~lL~s~s~~~---ir~~A~~~L~~~p~~~~e~ 658 (660)
..+...|.-||......+.++..++++.|-++=...+... +.+-...+|..+|.+...|
T Consensus 346 ~l~~psLp~iL~lL~GLa~gh~~tQ~~~~~~~l~~lH~LEqvss~~~IGslAEnlLeal~~~~~v~~~I 414 (802)
T PF13764_consen 346 FLSRPSLPYILRLLRGLARGHEPTQLLIAEQLLPLLHRLEQVSSEEHIGSLAENLLEALAENEDVAKKI 414 (802)
T ss_pred HhcCCcHHHHHHHHHHHHhcCHHHHHHHHhhHHHHHHHhhcCCCccchHHHHHHHHHHHhcChhHHHHH
Confidence 3466777778876655566677778844444433333444 4444457777888765544
No 142
>KOG1241 consensus Karyopherin (importin) beta 1 [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=96.49 E-value=0.11 Score=60.56 Aligned_cols=164 Identities=13% Similarity=0.105 Sum_probs=113.2
Q ss_pred HHHHHhCCCHHHHHHhh----CCCCHHHHHHHHHHHHHhhCCch-hHHHHHHcCCHHHHHHHHccCCCHHHHHHHHHHHH
Q 006114 400 IAKICDEVGLPKILQLL----TSEDPDVQIHAVKVVANLAAEDI-NQEKIVEEGGLDALLLLLRTSQNTTILRVASGAIA 474 (660)
Q Consensus 400 ~~~I~e~ggI~~LV~LL----~s~d~~vr~~Aa~aL~nLa~~~e-n~~~Ive~GgI~~Lv~LL~~s~d~~v~~~Aa~AL~ 474 (660)
.+..++...+|.++.++ +++|-.-+..|+-+++.+-..|+ .+..-.-.+++|.++.++. ++.--++..++|+|+
T Consensus 353 ~A~~~~D~Iv~~Vl~Fiee~i~~pdwr~reaavmAFGSIl~gp~~~~Lt~iV~qalp~ii~lm~-D~sl~VkdTaAwtlg 431 (859)
T KOG1241|consen 353 FAQCVGDDIVPHVLPFIEENIQNPDWRNREAAVMAFGSILEGPEPDKLTPIVIQALPSIINLMS-DPSLWVKDTAAWTLG 431 (859)
T ss_pred HHHHhcccchhhhHHHHHHhcCCcchhhhhHHHHHHHhhhcCCchhhhhHHHhhhhHHHHHHhc-CchhhhcchHHHHHH
Confidence 34556666777777666 47888899999999999888543 4555556779999999998 777788899999999
Q ss_pred HhhcC-chhHH-HHHhcCccHHHHHhhcCCCCHHHHHHHHHHHHHHh--cChh----HHHHHHhccHHHHHH----HHhc
Q 006114 475 NLAMN-EMNQG-LIMSRGGGQLLAKTASKTDDPQTLRMVAGALANLC--GNEK----LHTMLEEDGAIKALL----AMVR 542 (660)
Q Consensus 475 nLA~~-~~n~~-~Ive~g~I~~Ll~LL~~s~d~~v~~~Aa~aLanLa--~~~~----~r~~iv~~G~V~~Lv----~lL~ 542 (660)
.++.+ |+... ...-.+.++.++.-|. ..|.+..++||++.+|+ .... +...... ...+.++ ..-+
T Consensus 432 rI~d~l~e~~~n~~~l~~~l~~l~~gL~--DePrva~N~CWAf~~Laea~~eA~~s~~qt~~~t-~~y~~ii~~Ll~~td 508 (859)
T KOG1241|consen 432 RIADFLPEAIINQELLQSKLSALLEGLN--DEPRVASNVCWAFISLAEAAYEAAVSNGQTDPAT-PFYEAIIGSLLKVTD 508 (859)
T ss_pred HHHhhchhhcccHhhhhHHHHHHHHHhh--hCchHHHHHHHHHHHHHHHHHHhccCCCCCCccc-hhHHHHHHHHHhhcc
Confidence 99877 43222 2233556777777775 47899999999999998 1111 1111222 2233333 3322
Q ss_pred ---CCCHHHHHHHHHHHHHhhccchhhh
Q 006114 543 ---SGNIDVIAQVARGLANFAKCESRAI 567 (660)
Q Consensus 543 ---s~~~~v~~~Al~aLanLA~~~~~~~ 567 (660)
......+..|..+|+.+..+.+...
T Consensus 509 r~dgnqsNLR~AAYeALmElIk~st~~v 536 (859)
T KOG1241|consen 509 RADGNQSNLRSAAYEALMELIKNSTDDV 536 (859)
T ss_pred ccccchhhHHHHHHHHHHHHHHcCcHHH
Confidence 2346789999999999988876543
No 143
>PF04063 DUF383: Domain of unknown function (DUF383); InterPro: IPR007205 This is a protein of unknown function. It is found N-terminal to another domain of unknown function (IPR007206 from INTERPRO).
Probab=96.45 E-value=0.032 Score=55.80 Aligned_cols=121 Identities=17% Similarity=0.130 Sum_probs=91.5
Q ss_pred HHHHHHHHHHHHHhcChhHHHHHHhcc----------------HHHHHHHHhcC------CCHHHHHHHHHHHHHhhccc
Q 006114 506 QTLRMVAGALANLCGNEKLHTMLEEDG----------------AIKALLAMVRS------GNIDVIAQVARGLANFAKCE 563 (660)
Q Consensus 506 ~v~~~Aa~aLanLa~~~~~r~~iv~~G----------------~V~~Lv~lL~s------~~~~v~~~Al~aLanLA~~~ 563 (660)
.....++..|+||+..+.++..+...+ ++..|+.++.. ...+-....+.+++|++..
T Consensus 10 ~~adl~~MLLsNlT~~~~~~~~ll~~~~~~~~~~~~~~~~~~~~l~~Ll~~F~~g~~~~~n~~~~~~yla~vl~NlS~~- 88 (192)
T PF04063_consen 10 PLADLACMLLSNLTRSDSGCEKLLQLKRESSSQAPKEVSLSGFYLDKLLDLFVKGADPSYNKKDNYDYLASVLANLSQL- 88 (192)
T ss_pred chHHHHHHHHHHhccchHHHHHHHhcccccccccccccchhHHHHHHHHHHHHcCCcccCCCCcchhHHHHHHHHhcCC-
Confidence 355667889999998888888666432 45556666543 2245567889999999964
Q ss_pred hhhhhhcchhhhHHHhhc--Ch--HHHHHHhhcCCCHHHHHHHHHHHHHhhcCCccHHHHHh---cCcHHHHHHHHhcC
Q 006114 564 SRAIVQGQRKGRSHLMED--SA--LEWLIANSKTNSASTRRHVELALCHLAQNEDNARDFIS---RGGAKELVQISIES 635 (660)
Q Consensus 564 ~~~~aq~~~e~r~~Li~~--G~--v~~Lv~lL~s~d~~vr~~Aa~AL~nLa~~~e~~~~Ive---~G~l~~Lv~lL~s~ 635 (660)
+.||..+.+. +. +..|+.++.+.+.--|..++.+|.|||-+...+..+.. .+++|.|+--+..+
T Consensus 89 --------~~gR~~~l~~~~~~~~l~kLl~ft~~~s~iRR~Gva~~IrNccFd~~~H~~LL~~~~~~iLp~LLlPLaGp 159 (192)
T PF04063_consen 89 --------PEGRQFFLDPQRYDGPLQKLLPFTEHKSVIRRGGVAGTIRNCCFDTDSHEWLLSDDEVDILPYLLLPLAGP 159 (192)
T ss_pred --------HHHHHHHhCchhhhhHHHHHHHHhccCcHHHHHHHHHHHHHhhccHhHHHHhcCchhhhhHHHHHhhccCC
Confidence 7899999873 34 77888888888777788899999999999988888886 46777777766643
No 144
>PF15070 GOLGA2L5: Putative golgin subfamily A member 2-like protein 5
Probab=96.44 E-value=0.74 Score=53.92 Aligned_cols=194 Identities=20% Similarity=0.227 Sum_probs=91.0
Q ss_pred HHHHhhHHHHHHhhhhhhhHHHHhhhhHHHHHHHHHhhhhhhhhhhhhHHHHHHHHHHHhhhhhhhhhhh---------h
Q 006114 95 RESQISYDESMRNLVTRSEFLEKENAHLELEVEKILGELNHQKDQNNLKREKIVQLEISLKNSKQQQLDN---------S 165 (660)
Q Consensus 95 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---------~ 165 (660)
+.++..||+..-+|+.-.-.+...++.+..++..|..+. ...-..+..||.+|...+.+.-.. +
T Consensus 7 ~qlq~Erd~ya~~lk~e~a~~qqr~~qmseev~~L~eEk-------~~~~~~V~eLE~sL~eLk~q~~~~~~~~~pa~ps 79 (617)
T PF15070_consen 7 KQLQAERDQYAQQLKEESAQWQQRMQQMSEEVRTLKEEK-------EHDISRVQELERSLSELKNQMAEPPPPEPPAGPS 79 (617)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHhhcccCCccccccch
Confidence 344444444433344443344444445555554444443 333344666666665543322111 1
Q ss_pred hhHHHHHHhhHHHHHHHHHHHHHHHHHHhhhhchHHHHHHHHHHHhhhhhhHHHHhhhhhHHHHHHhhHHHHHHHHHHHH
Q 006114 166 SYQKVLADTTQMYEKKITELIKQLEIEHARSEGAEEQVDTMKKLISDNQKSIEQYEMENSTYQKALADTTQLYEKKIAEL 245 (660)
Q Consensus 166 ~~~~~~~~~~~~~~~~~~~l~~~l~~e~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~ 245 (660)
.-...+......+.+++..|..+++.....+..+..-+...+.+|.++..... .+..... ....|
T Consensus 80 e~E~~Lq~E~~~L~kElE~L~~qlqaqv~~ne~Ls~L~~EqEerL~ELE~~le-------~~~e~~~--------D~~kL 144 (617)
T PF15070_consen 80 EVEQQLQAEAEHLRKELESLEEQLQAQVENNEQLSRLNQEQEERLAELEEELE-------RLQEQQE--------DRQKL 144 (617)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHH--------HHHHH
Confidence 11113444555556666666655555444444333333333444444432111 1111111 23334
Q ss_pred hhhhhhhhhhhhhhHHhHHHHHHHhhhhhccccchhH----------------------HHHHHHHHHHHHHHHHhHHHH
Q 006114 246 NKKLEDEHACFEGAVEQLDMVKKLLSDYQNSNQGQKE----------------------VHELCVKLKETRQLHESAVYE 303 (660)
Q Consensus 246 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e----------------------~~~Lk~~Le~e~~~~e~~e~E 303 (660)
...++.+.+...+|..|=..+|..|..-|..++.-.. +.+++..|.+.....+...+|
T Consensus 145 Le~lqsdk~t~SRAlsQN~eLK~QL~Elq~~Fv~ltne~~elt~~lq~Eq~~~keL~~kl~~l~~~l~~~~e~le~K~qE 224 (617)
T PF15070_consen 145 LEQLQSDKATASRALSQNRELKEQLAELQDAFVKLTNENMELTSALQSEQHVKKELQKKLGELQEKLHNLKEKLELKSQE 224 (617)
T ss_pred HhhhcccchHHHHHHHhHHHHHHHHHHHHHHHHHHHHhhhHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHH
Confidence 4556666666666666666666666666654443322 234444444455555555555
Q ss_pred HHHHHHH
Q 006114 304 VQTLKSE 310 (660)
Q Consensus 304 ~~~lks~ 310 (660)
+..|+.+
T Consensus 225 ~~~Lq~q 231 (617)
T PF15070_consen 225 AQSLQEQ 231 (617)
T ss_pred HHHHHHH
Confidence 5555553
No 145
>KOG1029 consensus Endocytic adaptor protein intersectin [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport]
Probab=96.43 E-value=2.9 Score=49.12 Aligned_cols=157 Identities=17% Similarity=0.208 Sum_probs=79.0
Q ss_pred HHhhhhhhhhhhhhHHHHHHHHHHHhhhhhhhhhhhhhhHHHHHHhhHHHHHHHHHHHHHHHHHHhhhhchHHHHHHHHH
Q 006114 129 ILGELNHQKDQNNLKREKIVQLEISLKNSKQQQLDNSSYQKVLADTTQMYEKKITELIKQLEIEHARSEGAEEQVDTMKK 208 (660)
Q Consensus 129 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~e~~~~~~~~~~~~~l~~ 208 (660)
|+++-+.++.-+--...++.+|+.+|+-.+-+.-..+-+..|..-- |.--+..++.-+..++.|--+.++|+.
T Consensus 421 m~~Qk~reqe~iv~~nak~~ql~~eletLn~k~qqls~kl~Dvr~~-------~tt~kt~ie~~~~q~e~~isei~qlqa 493 (1118)
T KOG1029|consen 421 MLNQKNREQEWIVYLNAKKKQLQQELETLNFKLQQLSGKLQDVRVD-------ITTQKTEIEEVTKQRELMISEIDQLQA 493 (1118)
T ss_pred HHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhheec-------cchHHHHHHHhhhHHHHHHHHHHHHHH
Confidence 3333333333333344455566555554433322223333333222 222233344444556666677888888
Q ss_pred HHhhhhhhHHHHhhhhhHHHHHHhhHHHHHHHHHHHHhhhhhhhhhhhhhhHHhHHHHHHHhhhhhccccchhHH-HHHH
Q 006114 209 LISDNQKSIEQYEMENSTYQKALADTTQLYEKKIAELNKKLEDEHACFEGAVEQLDMVKKLLSDYQNSNQGQKEV-HELC 287 (660)
Q Consensus 209 ~l~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~-~~Lk 287 (660)
.+.++|....+. +--. .+|+.|+-.-.+-.-+-.-++-+++..+- ..+.| ..++
T Consensus 494 rikE~q~kl~~l-----------~~Ek-------q~l~~qlkq~q~a~~~~~~~~s~L~aa~~-------~ke~irq~ik 548 (1118)
T KOG1029|consen 494 RIKELQEKLQKL-----------APEK-------QELNHQLKQKQSAHKETTQRKSELEAARR-------KKELIRQAIK 548 (1118)
T ss_pred HHHHHHHHHHhh-----------hhHH-------HHHHHHHHHhhhhccCcchHHHHHHHHHH-------HHHHHHHHHH
Confidence 888887433211 1111 12222222222222222222222222221 12233 6778
Q ss_pred HHHHHHHHHHHhHHHHHHHHHHHHHHHHHh
Q 006114 288 VKLKETRQLHESAVYEVQTLKSEYKNLLEE 317 (660)
Q Consensus 288 ~~Le~e~~~~e~~e~E~~~lks~l~~l~~~ 317 (660)
..+.....+.++.-+|+.++..++++|...
T Consensus 549 dqldelskE~esk~~eidi~n~qlkelk~~ 578 (1118)
T KOG1029|consen 549 DQLDELSKETESKLNEIDIFNNQLKELKED 578 (1118)
T ss_pred HHHHHHHHHHHHHHHhhhhHHHHHHHHHHH
Confidence 888888899999999999999999988763
No 146
>PF00261 Tropomyosin: Tropomyosin; InterPro: IPR000533 Tropomyosins [], are a family of closely related proteins present in muscle and non-muscle cells. In striated muscle, tropomyosin mediate the interactions between the troponin complex and actin so as to regulate muscle contraction []. The role of tropomyosin in smooth muscle and non-muscle tissues is not clear. Tropomyosin is an alpha-helical protein that forms a coiled-coil structure of 2 parallel helices containing 2 sets of 7 alternating actin binding sites []. There are multiple cell-specific isoforms, created by differential splicing of the messenger RNA from one gene, but the proportions of the isoforms vary between different cell types. Muscle isoforms of tropomyosin are characterised by having 284 amino acid residues and a highly conserved N-terminal region, whereas non-muscle forms are generally smaller and are heterogeneous in their N-terminal region. This entry represents tropomyosin (Tmp) 1, 2 and 3. Within the yeast Tmp1 and Tmp2, biochemical and sequence analyses indicate that Tpm2 spans four actin monomers along a filament, whereas Tpm1 spans five. Despite its shorter length, Tpm2 can compete with Tpm1 for binding to F-actin. Over-expression of Tpm2 in vivo alters the axial budding of haploids to a bipolar pattern, and this can be partially suppressed by co-over-expression of Tpm1. This suggests distinct functions for the two tropomyosins, and indicates that the ratio between them is important for correct morphogenesis [].; PDB: 2EFR_A 2Z5H_C 2Z5I_D 2D3E_B 2EFS_D 3U59_B 1C1G_C 1IHQ_A 3AZD_B 1MV4_B ....
Probab=96.41 E-value=1.4 Score=45.42 Aligned_cols=151 Identities=19% Similarity=0.270 Sum_probs=111.5
Q ss_pred HHHhhhhhhhhhhhhHHHHHHHHHHHhhhhhhhhhhhhhhHHHHHHhhHHHHHHHHHHHHHHHHHHhhhhchHHHHHHHH
Q 006114 128 KILGELNHQKDQNNLKREKIVQLEISLKNSKQQQLDNSSYQKVLADTTQMYEKKITELIKQLEIEHARSEGAEEQVDTMK 207 (660)
Q Consensus 128 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~e~~~~~~~~~~~~~l~ 207 (660)
+-++.+.+.-. ...+++.+||..|+..+..--+.-.++..++......+..+......++.--.+...+++++..+.
T Consensus 78 r~~k~lE~r~~---~~eeri~~lE~~l~ea~~~~ee~e~k~~E~~rkl~~~E~~Le~aEeR~e~~E~ki~eLE~el~~~~ 154 (237)
T PF00261_consen 78 RARKVLENREQ---SDEERIEELEQQLKEAKRRAEEAERKYEEVERKLKVLEQELERAEERAEAAESKIKELEEELKSVG 154 (237)
T ss_dssp HHHHHHHHHHH---HHHHHHHHCHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHhHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhchhHHHHHHHHHHHH
Confidence 33444444333 345688999999999999999999999888888888888888888888888888888888888888
Q ss_pred HHHhhhhhhHHHHhhhhhHHHHHHhhHHHHHHHHHHHHhhhhhhhhhhhhhhHHhHHHHHHHhhhhhccccchhHHHHHH
Q 006114 208 KLISDNQKSIEQYEMENSTYQKALADTTQLYEKKIAELNKKLEDEHACFEGAVEQLDMVKKLLSDYQNSNQGQKEVHELC 287 (660)
Q Consensus 208 ~~l~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~Lk 287 (660)
+.|..+.-+.. ..+..-..|+.+|..|..+|..--.|.+.|+.....+.+ ++..|.
T Consensus 155 ~~lk~lE~~~~-----------~~~~re~~~e~~i~~L~~~lkeaE~Rae~aE~~v~~Le~-------------~id~le 210 (237)
T PF00261_consen 155 NNLKSLEASEE-----------KASEREDEYEEKIRDLEEKLKEAENRAEFAERRVKKLEK-------------EIDRLE 210 (237)
T ss_dssp HHHHHHHHHHH-----------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------------HHHHHH
T ss_pred HHHHHhhhhhh-----------hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------------HHHHHH
Confidence 77777763332 233445679999999999999999999999876655433 345566
Q ss_pred HHHHHHHHHHHhHHHHHH
Q 006114 288 VKLKETRQLHESAVYEVQ 305 (660)
Q Consensus 288 ~~Le~e~~~~e~~e~E~~ 305 (660)
..|......+.....|+-
T Consensus 211 ~eL~~~k~~~~~~~~eld 228 (237)
T PF00261_consen 211 DELEKEKEKYKKVQEELD 228 (237)
T ss_dssp HHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 666666666666665553
No 147
>KOG0612 consensus Rho-associated, coiled-coil containing protein kinase [Signal transduction mechanisms]
Probab=96.41 E-value=3.9 Score=50.44 Aligned_cols=22 Identities=32% Similarity=0.403 Sum_probs=14.3
Q ss_pred HHHHHHHHHhhhhhhhhhhhhh
Q 006114 237 LYEKKIAELNKKLEDEHACFEG 258 (660)
Q Consensus 237 ~~~~~~~~~~~~~~~~~~~~~~ 258 (660)
-|+.+...+...++.+.+-..+
T Consensus 671 ~~e~~lk~~q~~~eq~~~E~~~ 692 (1317)
T KOG0612|consen 671 KLERKLKMLQNELEQENAEHHR 692 (1317)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 4888888887777655543333
No 148
>PRK11637 AmiB activator; Provisional
Probab=96.39 E-value=1.3 Score=49.56 Aligned_cols=28 Identities=14% Similarity=0.182 Sum_probs=12.2
Q ss_pred HHHHHHhhHHHHHHHHHHHHhhhhhhhh
Q 006114 226 TYQKALADTTQLYEKKIAELNKKLEDEH 253 (660)
Q Consensus 226 ~~~~~l~~~~~~~~~~~~~~~~~~~~~~ 253 (660)
.|-..+++....|-..+....++|++..
T Consensus 159 ~~l~~i~~~d~~~l~~l~~~~~~L~~~k 186 (428)
T PRK11637 159 AYFGYLNQARQETIAELKQTREELAAQK 186 (428)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3434444444444444444444444333
No 149
>PRK14707 hypothetical protein; Provisional
Probab=96.23 E-value=0.15 Score=64.87 Aligned_cols=242 Identities=20% Similarity=0.137 Sum_probs=153.3
Q ss_pred CHHHHHHhhC--CCCHHHHHHHHHHHHHhhCCchhHHHHHHcCCHHHHHHHHccCCCHHHHHHHHHHHHHhhcCchhHHH
Q 006114 408 GLPKILQLLT--SEDPDVQIHAVKVVANLAAEDINQEKIVEEGGLDALLLLLRTSQNTTILRVASGAIANLAMNEMNQGL 485 (660)
Q Consensus 408 gI~~LV~LL~--s~d~~vr~~Aa~aL~nLa~~~en~~~Ive~GgI~~Lv~LL~~s~d~~v~~~Aa~AL~nLA~~~~n~~~ 485 (660)
.+..++..++ .++.+++..+..+...++..+..+..+ +..||..+++.+..=++..-.+.|+..|+....++.....
T Consensus 164 ~~~lllNafSKw~~~~~c~~aa~~la~~~~~~d~~~~~~-~~q~ia~~lNa~sKWp~~~~c~~aa~~la~~l~~~~~l~~ 242 (2710)
T PRK14707 164 NISLALNAFSKWSDNPDCQAVAPRFAALVASDDRLRSAM-DAQGVATVLNALCKWPDTPDCGNAVSALAERLADESRLRN 242 (2710)
T ss_pred cHHHHHHHhhcCCCCchHHHHHHHHHHHhcCChhhhccc-chHHHHHHHHHHhcCCCChhHHHHHHHHHHHHcCcHHHHH
Confidence 3555666555 467788888887777777776555444 5668888999887655544445666666655545454444
Q ss_pred HHhcCccHHHHHhhcCCCCHHHHHHHHHHHH-HHhcChhHHHHHHhccHHHHHHHHhcCCCHHHHHHHHHHHHHhhccch
Q 006114 486 IMSRGGGQLLAKTASKTDDPQTLRMVAGALA-NLCGNEKLHTMLEEDGAIKALLAMVRSGNIDVIAQVARGLANFAKCES 564 (660)
Q Consensus 486 Ive~g~I~~Ll~LL~~s~d~~v~~~Aa~aLa-nLa~~~~~r~~iv~~G~V~~Lv~lL~s~~~~v~~~Al~aLanLA~~~~ 564 (660)
-++.-+|..+++.|+..++..+...|+.+|+ .++.++..+..|--.++-..|-.+-+-++..++..|+..|+.=-.+++
T Consensus 243 ~~~~q~va~~lN~lsKwp~~~~C~~a~~~lA~rl~~~~~l~~al~~q~vanalNalSKwpd~~vc~~Aa~~la~rl~~d~ 322 (2710)
T PRK14707 243 ELKPQELGNALNALSKWADTPVCAAAASALAERLVDDPGLRKALDPINVTQALNALSKWADLPVCAEAAIALAERLADDP 322 (2710)
T ss_pred hCChHHHHHHHHHHhcCCCchHHHHHHHHHHHHHhhhHHHHHhcCHHHHHHHHhhhhcCCCchHHHHHHHHHHHHHhccH
Confidence 4555567777777777777777777777776 566777777776665555555555556777777777766653322332
Q ss_pred hhhhhcchhhhHHHhhcChHHHHHHhhcCCCHHHHHHHHHHHH-HhhcCCccHHHHHhcCcHHHHHHHHhcCChHHHHHH
Q 006114 565 RAIVQGQRKGRSHLMEDSALEWLIANSKTNSASTRRHVELALC-HLAQNEDNARDFISRGGAKELVQISIESSREDIRNL 643 (660)
Q Consensus 565 ~~~aq~~~e~r~~Li~~G~v~~Lv~lL~s~d~~vr~~Aa~AL~-nLa~~~e~~~~Ive~G~l~~Lv~lL~s~s~~~ir~~ 643 (660)
..+..+-..++-..|-.+.+-++..+.+.|+.+|. .|+.+.+.+..+--.|+-..|-.+..-++.+.-+.+
T Consensus 323 --------~l~~~~~~~~~~~~LNalsKWpd~~~C~~Aa~~LA~rl~~d~~l~~~l~~q~~a~~lNalsKWp~~~~c~~a 394 (2710)
T PRK14707 323 --------ELCKALNARGLSTALNALSKWPDNPVCAAAVSALAERLVADPELRKDLEPQGVSSVLNALSKWPDTPVCAAA 394 (2710)
T ss_pred --------hhhhccchHHHHHHHHHhhcCCCchhHHHHHHHHHHHhccCHhhhcccchhHHHHHHhhhhcCCCchHHHHH
Confidence 23333323333344444455566655555555554 778888888888888888888888887776654443
Q ss_pred HH---HHHhcCcchhhhh
Q 006114 644 AK---KTMKSNPRLQADT 658 (660)
Q Consensus 644 A~---~~L~~~p~~~~e~ 658 (660)
|. .-|-.+|+++.++
T Consensus 395 a~~LA~~l~~d~~l~~~~ 412 (2710)
T PRK14707 395 ASALAEHVVDDLELRKGL 412 (2710)
T ss_pred HHHHHHHhccChhhhhhc
Confidence 33 2334777776654
No 150
>PF04063 DUF383: Domain of unknown function (DUF383); InterPro: IPR007205 This is a protein of unknown function. It is found N-terminal to another domain of unknown function (IPR007206 from INTERPRO).
Probab=96.22 E-value=0.036 Score=55.44 Aligned_cols=122 Identities=21% Similarity=0.179 Sum_probs=86.7
Q ss_pred CCHHHHHHHHHHHHHhhCCchhHHHHHHc----------------CCHHHHHHHHccC-----CCHHHHHHHHHHHHHhh
Q 006114 419 EDPDVQIHAVKVVANLAAEDINQEKIVEE----------------GGLDALLLLLRTS-----QNTTILRVASGAIANLA 477 (660)
Q Consensus 419 ~d~~vr~~Aa~aL~nLa~~~en~~~Ive~----------------GgI~~Lv~LL~~s-----~d~~v~~~Aa~AL~nLA 477 (660)
+....-..++.+|+||+..+..+..+.+. .++..|+.++..+ ....-..+.+.+++||+
T Consensus 7 ~~~~~adl~~MLLsNlT~~~~~~~~ll~~~~~~~~~~~~~~~~~~~~l~~Ll~~F~~g~~~~~n~~~~~~yla~vl~NlS 86 (192)
T PF04063_consen 7 PKSPLADLACMLLSNLTRSDSGCEKLLQLKRESSSQAPKEVSLSGFYLDKLLDLFVKGADPSYNKKDNYDYLASVLANLS 86 (192)
T ss_pred CCcchHHHHHHHHHHhccchHHHHHHHhcccccccccccccchhHHHHHHHHHHHHcCCcccCCCCcchhHHHHHHHHhc
Confidence 33444556788899999988777755532 2477888888652 22334567899999999
Q ss_pred cCchhHHHHHhc--Cc--cHHHHHhhcCCCCHHHHHHHHHHHHHHhcChhHHHHHHhcc---HHHHHHHHh
Q 006114 478 MNEMNQGLIMSR--GG--GQLLAKTASKTDDPQTLRMVAGALANLCGNEKLHTMLEEDG---AIKALLAMV 541 (660)
Q Consensus 478 ~~~~n~~~Ive~--g~--I~~Ll~LL~~s~d~~v~~~Aa~aLanLa~~~~~r~~iv~~G---~V~~Lv~lL 541 (660)
..+..|..++.. +. +..|+..+.+ .++--+.-++++|.|+|.+...+..+.... .+|.|+-.+
T Consensus 87 ~~~~gR~~~l~~~~~~~~l~kLl~ft~~-~s~iRR~Gva~~IrNccFd~~~H~~LL~~~~~~iLp~LLlPL 156 (192)
T PF04063_consen 87 QLPEGRQFFLDPQRYDGPLQKLLPFTEH-KSVIRRGGVAGTIRNCCFDTDSHEWLLSDDEVDILPYLLLPL 156 (192)
T ss_pred CCHHHHHHHhCchhhhhHHHHHHHHhcc-CcHHHHHHHHHHHHHhhccHhHHHHhcCchhhhhHHHHHhhc
Confidence 999999999973 33 5667777765 465556677799999999988888888754 445444444
No 151
>KOG1061 consensus Vesicle coat complex AP-1/AP-2/AP-4, beta subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=96.20 E-value=0.021 Score=66.39 Aligned_cols=206 Identities=17% Similarity=0.187 Sum_probs=124.2
Q ss_pred CHHHHHHhhCCCCHHHHHHHHHHHHHhhCCchhHHHHHHcCCHHHHHHHHccCCCHHHHHHHHHHHHHhhcCchhHHHHH
Q 006114 408 GLPKILQLLTSEDPDVQIHAVKVVANLAAEDINQEKIVEEGGLDALLLLLRTSQNTTILRVASGAIANLAMNEMNQGLIM 487 (660)
Q Consensus 408 gI~~LV~LL~s~d~~vr~~Aa~aL~nLa~~~en~~~Ive~GgI~~Lv~LL~~s~d~~v~~~Aa~AL~nLA~~~~n~~~Iv 487 (660)
++..++.=..++++.+|..|++.++-+-... +.+. ...+|..+++ +.++-++..|+-+++++ +..+.....
T Consensus 87 avnt~~kD~~d~np~iR~lAlrtm~~l~v~~-----i~ey-~~~Pl~~~l~-d~~~yvRktaa~~vakl--~~~~~~~~~ 157 (734)
T KOG1061|consen 87 AVNTFLKDCEDPNPLIRALALRTMGCLRVDK-----ITEY-LCDPLLKCLK-DDDPYVRKTAAVCVAKL--FDIDPDLVE 157 (734)
T ss_pred hhhhhhccCCCCCHHHHHHHhhceeeEeehH-----HHHH-HHHHHHHhcc-CCChhHHHHHHHHHHHh--hcCChhhcc
Confidence 3444444445678888888887775443321 2221 4778888887 78999999888888887 555667778
Q ss_pred hcCccHHHHHhhcCCCCHHHHHHHHHHHHHHhc-ChhHHHHHHhccHHHHHHHHhcCCCHHHHHHHHHHHHHhhccchhh
Q 006114 488 SRGGGQLLAKTASKTDDPQTLRMVAGALANLCG-NEKLHTMLEEDGAIKALLAMVRSGNIDVIAQVARGLANFAKCESRA 566 (660)
Q Consensus 488 e~g~I~~Ll~LL~~s~d~~v~~~Aa~aLanLa~-~~~~r~~iv~~G~V~~Lv~lL~s~~~~v~~~Al~aLanLA~~~~~~ 566 (660)
..|.++.|..++.+ .+|.|..+|..+|..+.. +++.-......-.+..++..+...+.-.+...+.++.+-.-.++.
T Consensus 158 ~~gl~~~L~~ll~D-~~p~VVAnAlaaL~eI~e~~~~~~~~~l~~~~~~~lL~al~ec~EW~qi~IL~~l~~y~p~d~~- 235 (734)
T KOG1061|consen 158 DSGLVDALKDLLSD-SNPMVVANALAALSEIHESHPSVNLLELNPQLINKLLEALNECTEWGQIFILDCLAEYVPKDSR- 235 (734)
T ss_pred ccchhHHHHHHhcC-CCchHHHHHHHHHHHHHHhCCCCCcccccHHHHHHHHHHHHHhhhhhHHHHHHHHHhcCCCCch-
Confidence 89999999999984 899999999999999873 322111111112222333333333333333333333332221110
Q ss_pred hhhcchhhhHHHhhcChHHHHHHhhcCCCHHHHHHHHHHHHHhhcCCccHHHHHhcCcHHHHHHHHhcCC
Q 006114 567 IVQGQRKGRSHLMEDSALEWLIANSKTNSASTRRHVELALCHLAQNEDNARDFISRGGAKELVQISIESS 636 (660)
Q Consensus 567 ~aq~~~e~r~~Li~~G~v~~Lv~lL~s~d~~vr~~Aa~AL~nLa~~~e~~~~Ive~G~l~~Lv~lL~s~s 636 (660)
-....+..+...+.+.++.+...+..++.++...........-....++|+.++.+.+
T Consensus 236 ------------ea~~i~~r~~p~Lqh~n~avvlsavKv~l~~~~~~~~~~~~~~~K~~~pl~tlls~~~ 293 (734)
T KOG1061|consen 236 ------------EAEDICERLTPRLQHANSAVVLSAVKVILQLVKYLKQVNELLFKKVAPPLVTLLSSES 293 (734)
T ss_pred ------------hHHHHHHHhhhhhccCCcceEeehHHHHHHHHHHHHHHHHHHHHHhcccceeeecccc
Confidence 0123455666667777777777777777777654433444444445667777776555
No 152
>KOG0804 consensus Cytoplasmic Zn-finger protein BRAP2 (BRCA1 associated protein) [General function prediction only]
Probab=96.19 E-value=0.11 Score=57.13 Aligned_cols=88 Identities=18% Similarity=0.231 Sum_probs=67.6
Q ss_pred hhhhhhhhhhhHHHHHHhhHHHHHHHHHHHHHHHHHHhhhhchHHHHHHHHHHHhhhhhhHHHHhhhhhHHHHHHhhHHH
Q 006114 157 SKQQQLDNSSYQKVLADTTQMYEKKITELIKQLEIEHARSEGAEEQVDTMKKLISDNQKSIEQYEMENSTYQKALADTTQ 236 (660)
Q Consensus 157 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~e~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~l~~~~~ 236 (660)
+++.+.+..+..+.+.+..+.+.-+++++-++|..++..++.+.+........+.+.+ +..+++-.
T Consensus 366 l~~~~~~~e~~kk~~e~k~~q~q~k~~k~~kel~~~~E~n~~l~knq~vw~~kl~~~~--------------e~~~~~~~ 431 (493)
T KOG0804|consen 366 LKQESSDLEAEKKIVERKLQQLQTKLKKCQKELKEEREENKKLIKNQDVWRGKLKELE--------------EREKEALG 431 (493)
T ss_pred hhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHH--------------HHHHHHHH
Confidence 3444445566666777888888899999999999999888888877777777777666 45667888
Q ss_pred HHHHHHHHHhhhhhhhhhhhhh
Q 006114 237 LYEKKIAELNKKLEDEHACFEG 258 (660)
Q Consensus 237 ~~~~~~~~~~~~~~~~~~~~~~ 258 (660)
.|+.+|-+|+.||-|=-.-+++
T Consensus 432 s~d~~I~dLqEQlrDlmf~le~ 453 (493)
T KOG0804|consen 432 SKDEKITDLQEQLRDLMFFLEA 453 (493)
T ss_pred HHHHHHHHHHHHHHhHheehhh
Confidence 9999999999998876554443
No 153
>PRK14707 hypothetical protein; Provisional
Probab=96.18 E-value=0.18 Score=64.27 Aligned_cols=266 Identities=18% Similarity=0.077 Sum_probs=169.3
Q ss_pred cccchhhhhhcccCCC--ccccccch--hhh-hhcCchhHHHHHhCCCHHHHHHhhC-CCCHHHHHHHHHHHHH-hhCCc
Q 006114 366 YTKDYISKGSSRFGAP--MSLQKSNP--SRE-LSGQRATIAKICDEVGLPKILQLLT-SEDPDVQIHAVKVVAN-LAAED 438 (660)
Q Consensus 366 ~~~g~i~~l~~~L~~~--~~~vr~~~--~~~-laa~~~~~~~I~e~ggI~~LV~LL~-s~d~~vr~~Aa~aL~n-La~~~ 438 (660)
.+.-+|...++++..- .+.|+... +-. ++.+ +....-++..++...+..|. .++..+-..|+.+|+. ++.++
T Consensus 202 ~~~q~ia~~lNa~sKWp~~~~c~~aa~~la~~l~~~-~~l~~~~~~q~va~~lN~lsKwp~~~~C~~a~~~lA~rl~~~~ 280 (2710)
T PRK14707 202 MDAQGVATVLNALCKWPDTPDCGNAVSALAERLADE-SRLRNELKPQELGNALNALSKWADTPVCAAAASALAERLVDDP 280 (2710)
T ss_pred cchHHHHHHHHHHhcCCCChhHHHHHHHHHHHHcCc-HHHHHhCChHHHHHHHHHHhcCCCchHHHHHHHHHHHHHhhhH
Confidence 5556777777777542 22333322 112 4443 44455566677777776665 5666555555555554 55455
Q ss_pred hhHHHHHHcCCHHHHHHHHccCCCHHHHHHHHHHHH-HhhcCchhHHHHHhcCccHHHHHhhcCCCCHHHHHHHHHHHH-
Q 006114 439 INQEKIVEEGGLDALLLLLRTSQNTTILRVASGAIA-NLAMNEMNQGLIMSRGGGQLLAKTASKTDDPQTLRMVAGALA- 516 (660)
Q Consensus 439 en~~~Ive~GgI~~Lv~LL~~s~d~~v~~~Aa~AL~-nLA~~~~n~~~Ive~g~I~~Ll~LL~~s~d~~v~~~Aa~aLa- 516 (660)
.. ..-.+...|...++.|..-++..+...|+.+|+ .|+.++..+..+ +.-++..+++-|+..+|..+...|+.+|+
T Consensus 281 ~l-~~al~~q~vanalNalSKwpd~~vc~~Aa~~la~rl~~d~~l~~~~-~~~~~~~~LNalsKWpd~~~C~~Aa~~LA~ 358 (2710)
T PRK14707 281 GL-RKALDPINVTQALNALSKWADLPVCAEAAIALAERLADDPELCKAL-NARGLSTALNALSKWPDNPVCAAAVSALAE 358 (2710)
T ss_pred HH-HHhcCHHHHHHHHhhhhcCCCchHHHHHHHHHHHHHhccHhhhhcc-chHHHHHHHHHhhcCCCchhHHHHHHHHHH
Confidence 44 334444467778888876777777777766666 455556555443 33356667777777788788888887776
Q ss_pred HHhcChhHHHHHHhccHHHHHHHHhcCCCHHHHHHHHHHHHHhhccchhhhhhcchhhhHHHhhcChHHHHHHhhcCCCH
Q 006114 517 NLCGNEKLHTMLEEDGAIKALLAMVRSGNIDVIAQVARGLANFAKCESRAIVQGQRKGRSHLMEDSALEWLIANSKTNSA 596 (660)
Q Consensus 517 nLa~~~~~r~~iv~~G~V~~Lv~lL~s~~~~v~~~Al~aLanLA~~~~~~~aq~~~e~r~~Li~~G~v~~Lv~lL~s~d~ 596 (660)
.++.++..+..+-..|+-..|-.+-+=++..++..|+.+|+.=...+ .+.+..+-..|+-..|-.+.+-++.
T Consensus 359 rl~~d~~l~~~l~~q~~a~~lNalsKWp~~~~c~~aa~~LA~~l~~d--------~~l~~~~~~Q~van~lnalsKWPd~ 430 (2710)
T PRK14707 359 RLVADPELRKDLEPQGVSSVLNALSKWPDTPVCAAAASALAEHVVDD--------LELRKGLDPQGVSNALNALAKWPDL 430 (2710)
T ss_pred HhccCHhhhcccchhHHHHHHhhhhcCCCchHHHHHHHHHHHHhccC--------hhhhhhcchhhHHHHHHHhhcCCcc
Confidence 56688888887776555555555555567777777777776544333 4566667666777777777777887
Q ss_pred HHHHHHHHHHH-HhhcCCccHHHHHhcCcHHHHHHHHhcCChHHHHH
Q 006114 597 STRRHVELALC-HLAQNEDNARDFISRGGAKELVQISIESSREDIRN 642 (660)
Q Consensus 597 ~vr~~Aa~AL~-nLa~~~e~~~~Ive~G~l~~Lv~lL~s~s~~~ir~ 642 (660)
.+...++.+|. .++.+.+.+..|--.++...|-.+..-++.+.-+.
T Consensus 431 ~~C~~aa~~lA~~la~d~~l~~~~~p~~va~~LnalSKWPd~p~c~~ 477 (2710)
T PRK14707 431 PICGQAVSALAGRLAHDTELCKALDPINVTQALDALSKWPDTPICGQ 477 (2710)
T ss_pred hhHHHHHHHHHHHHhccHHHHhhcChHHHHHHHHHhhcCCCChhHHH
Confidence 77777777776 45556677777766777777777777777654433
No 154
>PF04849 HAP1_N: HAP1 N-terminal conserved region; InterPro: IPR006933 This family is defined by an N-terminal conserved region found in several huntingtin-associated protein 1 (HAP1) homologues. HAP1 binds to huntingtin in a polyglutamine repeat-length-dependent manner. However, its possible role in the pathogenesis of Huntingtons disease is unclear. This family also includes a similar N-terminal conserved region from hypothetical protein products of ALS2CR3 genes found in the human juvenile amyotrophic lateral sclerosis critical region 2q33-2q34 [].
Probab=96.16 E-value=1.5 Score=46.77 Aligned_cols=138 Identities=22% Similarity=0.262 Sum_probs=99.2
Q ss_pred hHHHHhhhhHHHHHHHHHhhhhhhhhhhhhHHHHHHHHHHHhhhhhhhhhhhhhhHHHHHHhhHHHHHHHHHHHHHHHHH
Q 006114 113 EFLEKENAHLELEVEKILGELNHQKDQNNLKREKIVQLEISLKNSKQQQLDNSSYQKVLADTTQMYEKKITELIKQLEIE 192 (660)
Q Consensus 113 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~e 192 (660)
++|.+-.+.||.|-..|+.+-.+=+.......++-++| ..+-.+.....+..|+.|-..|...
T Consensus 163 e~Lq~Klk~LEeEN~~LR~Ea~~L~~et~~~EekEqqL-----------------v~dcv~QL~~An~qia~LseELa~k 225 (306)
T PF04849_consen 163 EALQEKLKSLEEENEQLRSEASQLKTETDTYEEKEQQL-----------------VLDCVKQLSEANQQIASLSEELARK 225 (306)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhHHHhhccHHHHHH-----------------HHHHHHHhhhcchhHHHHHHHHHHH
Confidence 45555566666666666655555554444444444444 1233444556677888888889889
Q ss_pred HhhhhchHHHHHHHHHHHhhhhhhHHHHhhhhhHHHHHHhhHHHHH---HHHHHHHhhhhhhhhhhhhhhHHhHHHHH
Q 006114 193 HARSEGAEEQVDTMKKLISDNQKSIEQYEMENSTYQKALADTTQLY---EKKIAELNKKLEDEHACFEGAVEQLDMVK 267 (660)
Q Consensus 193 ~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~l~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 267 (660)
...+....+++..|-.++-|+|+..+++-.||-..+..|..+-..- ..++.+|..+..+-.+-+..+.++|..++
T Consensus 226 ~Ee~~rQQEEIt~LlsqivdlQ~r~k~~~~EnEeL~q~L~~ske~Q~~L~aEL~elqdkY~E~~~mL~EaQEElk~lR 303 (306)
T PF04849_consen 226 TEENRRQQEEITSLLSQIVDLQQRCKQLAAENEELQQHLQASKESQRQLQAELQELQDKYAECMAMLHEAQEELKTLR 303 (306)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 9999999999999999999999999999999999999999876654 34566667777766666666666665544
No 155
>PF12128 DUF3584: Protein of unknown function (DUF3584); InterPro: IPR021979 This family consist of uncharacterised bacterial proteins.
Probab=96.12 E-value=6.4 Score=50.05 Aligned_cols=99 Identities=20% Similarity=0.263 Sum_probs=61.0
Q ss_pred HHHHhhHHHHHHHHHHHHHHHHHHhhhhchHHHHHHHHHHHhhhhhhHH---HHhhhhhHHHHHHhhHH---HHHHHHHH
Q 006114 170 VLADTTQMYEKKITELIKQLEIEHARSEGAEEQVDTMKKLISDNQKSIE---QYEMENSTYQKALADTT---QLYEKKIA 243 (660)
Q Consensus 170 ~~~~~~~~~~~~~~~l~~~l~~e~~~~~~~~~~~~~l~~~l~~~~~~~~---~~~~~~~~~~~~l~~~~---~~~~~~~~ 243 (660)
-++.-++.+...++++.+++..+-.....=...+..+++.+..+.+.++ +++-.=..|+.-+..+- ..|-....
T Consensus 740 ~i~~~~~~~~~~~~~le~~~~~eL~~~GvD~~~I~~l~~~i~~L~~~l~~ie~~r~~V~eY~~~~~~~~~~~~~~~~~~~ 819 (1201)
T PF12128_consen 740 EIAAAKQEAKEQLKELEQQYNQELAGKGVDPERIQQLKQEIEQLEKELKRIEERRAEVIEYEDWLQEEWDKVDELREEKP 819 (1201)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHhhhhhhhhhh
Confidence 4556677777888888888888877666666678888888777776554 33333344555444221 11222566
Q ss_pred HHhhhhhhhhhhhhhhHHhHHHHHH
Q 006114 244 ELNKKLEDEHACFEGAVEQLDMVKK 268 (660)
Q Consensus 244 ~~~~~~~~~~~~~~~~~~~~~~~~~ 268 (660)
+|.+++.+-..++...+.++...++
T Consensus 820 ~l~~~~~~~~~~~~~l~~~~~~~~~ 844 (1201)
T PF12128_consen 820 ELEEQLRDLEQELQELEQELNQLQK 844 (1201)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 6666666666666666666555443
No 156
>PF12128 DUF3584: Protein of unknown function (DUF3584); InterPro: IPR021979 This family consist of uncharacterised bacterial proteins.
Probab=96.07 E-value=6.7 Score=49.86 Aligned_cols=89 Identities=19% Similarity=0.353 Sum_probs=59.9
Q ss_pred hhHHhHHHHHHHhhhhhccccchhHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHhhhhccHHHHHHHHHHHHHHH
Q 006114 258 GAVEQLDMVKKLLSDYQNSNQGQKEVHELCVKLKETRQLHESAVYEVQTLKSEYKNLLEEKETMSDELQAARQRLLVEEK 337 (660)
Q Consensus 258 ~~~~~~~~~~~~~~~~~~~~~~~~e~~~Lk~~Le~e~~~~e~~e~E~~~lks~l~~l~~~~~~~~eel~~~~k~l~~e~~ 337 (660)
....++..++..++..+......+++......++........+.+.+..++.+...+....+....++...++.+
T Consensus 446 ~~~~~l~~l~~~~~~~~~~~e~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~l~~~~~~~----- 520 (1201)
T PF12128_consen 446 QLKSELAELKQQLKNPQYTEEEKEQLEQADKRLEQAQEQQNQAQQAVEELQAEEQELRKERDQAEEELRQARREL----- 520 (1201)
T ss_pred HHHHHHHHHHHHHhCcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----
Confidence 445567777777776666666777778888888888888888888888888888877776665555554443333
Q ss_pred HhhhhHHHHHHHHhhC
Q 006114 338 QRKAIEYELVKLKKTA 353 (660)
Q Consensus 338 ~rkkLe~E~~~l~~~l 353 (660)
..+...++.+...+
T Consensus 521 --~~~~~~~~~l~~~L 534 (1201)
T PF12128_consen 521 --EELRAQIAELQRQL 534 (1201)
T ss_pred --HHHHHHHHHHHHhh
Confidence 33444455544444
No 157
>KOG0978 consensus E3 ubiquitin ligase involved in syntaxin degradation [Posttranslational modification, protein turnover, chaperones]
Probab=96.05 E-value=4.5 Score=47.70 Aligned_cols=180 Identities=17% Similarity=0.185 Sum_probs=120.7
Q ss_pred HHHHHHHHhhhhhhhhhhhhHHHHHHHHHHHhhhhhhhhhhhhhhHHHHHHhhHHHHHHHHHHHHHHHHHHhhhhchHHH
Q 006114 123 ELEVEKILGELNHQKDQNNLKREKIVQLEISLKNSKQQQLDNSSYQKVLADTTQMYEKKITELIKQLEIEHARSEGAEEQ 202 (660)
Q Consensus 123 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~e~~~~~~~~~~ 202 (660)
+..-+-++.+++--.+.-..|....++|=.++...-++....-.-.-.+-.+..-+.++...|..+...-.+..+.++..
T Consensus 446 ~~~~k~ll~e~~t~gsA~ed~Qeqn~kL~~el~ekdd~nfklm~e~~~~~q~~k~L~~ek~~l~~~i~~l~~~~~~~~~~ 525 (698)
T KOG0978|consen 446 EKNFKCLLSEMETIGSAFEDMQEQNQKLLQELREKDDKNFKLMSERIKANQKHKLLREEKSKLEEQILTLKASVDKLELK 525 (698)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33333444444444444444555555555555555544444332222334445556666666777777777777777888
Q ss_pred HHHHHHHHhhhhhhHHHHhhhhhHHHHHHhhHHHHHHHHHHHHhhhhhhhhhhhhhhHHhHHHHHHHhhhhhccccchhH
Q 006114 203 VDTMKKLISDNQKSIEQYEMENSTYQKALADTTQLYEKKIAELNKKLEDEHACFEGAVEQLDMVKKLLSDYQNSNQGQKE 282 (660)
Q Consensus 203 ~~~l~~~l~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e 282 (660)
+..|+.++.-++.+..-..++-..++..+. +|-+++.++-+.+++=....+..+.+|..+...
T Consensus 526 i~~leeq~~~lt~~~~~l~~el~~~~~~le----~~kk~~~e~~~~~~~Lq~~~ek~~~~le~i~~~------------- 588 (698)
T KOG0978|consen 526 IGKLEEQERGLTSNESKLIKELTTLTQSLE----MLKKKAQEAKQSLEDLQIELEKSEAKLEQIQEQ------------- 588 (698)
T ss_pred HHHHHHHHHHhhHhhhhhHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------------
Confidence 888888888888777777777777777666 778888888888887777777777666665543
Q ss_pred HHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHhhh
Q 006114 283 VHELCVKLKETRQLHESAVYEVQTLKSEYKNLLEEKE 319 (660)
Q Consensus 283 ~~~Lk~~Le~e~~~~e~~e~E~~~lks~l~~l~~~~~ 319 (660)
+.+++..|+.++..+..+++|+.+|+-.+..+.....
T Consensus 589 ~~e~~~ele~~~~k~~rleEE~e~L~~kle~~k~~~~ 625 (698)
T KOG0978|consen 589 YAELELELEIEKFKRKRLEEELERLKRKLERLKKEES 625 (698)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccc
Confidence 4667888999999999999999999998886655433
No 158
>PF11707 Npa1: Ribosome 60S biogenesis N-terminal; InterPro: IPR021714 Npa1p is required for ribosome biogenesis and operates in the same functional environment as Rsa3p and Dbp6p during early maturation of 60S ribosomal subunits []. The protein partners of Npa1p include eight putative helicases as well as the novel Npa2p factor. Npa1p can also associate with a subset of H/ACA and C/D small nucleolar RNPs (snoRNPs) involved in the chemical modification of residues in the vicinity of the peptidyl transferase centre []. The protein has also been referred to as Urb1, and this domain at the N-terminal is one of several conserved regions along the length.
Probab=96.05 E-value=0.75 Score=49.83 Aligned_cols=209 Identities=16% Similarity=0.153 Sum_probs=142.2
Q ss_pred HHHHHcCCHHHHHHHHccCCCHHHHHHHHHHHHHhhc-C-chhHHHHHh-cC-ccHHHHHhhcCC----CC--------H
Q 006114 442 EKIVEEGGLDALLLLLRTSQNTTILRVASGAIANLAM-N-EMNQGLIMS-RG-GGQLLAKTASKT----DD--------P 505 (660)
Q Consensus 442 ~~Ive~GgI~~Lv~LL~~s~d~~v~~~Aa~AL~nLA~-~-~~n~~~Ive-~g-~I~~Ll~LL~~s----~d--------~ 505 (660)
..|.... +..+...|. +..+.+...+...|..++. + ......+.. -+ ..+.+..++... .+ +
T Consensus 51 ~~iL~~~-~k~lyr~L~-~~~~~~~~~~LrLL~~iv~f~~g~~a~~v~~~fd~~~~~l~kll~~~~~~~~~~~~~~~~~~ 128 (330)
T PF11707_consen 51 RSILQNH-LKLLYRSLS-SSKPSLTNPALRLLTAIVSFDGGALAREVLRSFDFSLKSLPKLLTPRKKEKEKDSESSKSKP 128 (330)
T ss_pred HHHHHHH-HHHHHHHhC-cCcHHHHHHHHHHHHHHHccCCHHHHHHHHHhcCCchhhHHHHhccccccccccccccccCc
Confidence 4444443 788888887 5556677789999999988 4 345555554 22 234455555321 11 2
Q ss_pred HHHHHHHHHH-HHHh-cChhHHHHHHhc-cHHHHHHHHhcCCCHHHHHHHHHHHHHhhccchhhhhhcchhhhHHHhhcC
Q 006114 506 QTLRMVAGAL-ANLC-GNEKLHTMLEED-GAIKALLAMVRSGNIDVIAQVARGLANFAKCESRAIVQGQRKGRSHLMEDS 582 (660)
Q Consensus 506 ~v~~~Aa~aL-anLa-~~~~~r~~iv~~-G~V~~Lv~lL~s~~~~v~~~Al~aLanLA~~~~~~~aq~~~e~r~~Li~~G 582 (660)
+++......+ +.+. .++..+..+... +.+..+..-|...++++....+.+|..-...++. + .+..+..+....
T Consensus 129 siR~~fI~F~Lsfl~~~~~~~~~~lL~~~~~~~~l~k~l~~D~~~~v~~iL~~l~~~Vl~~~~-v---~r~~K~~~fn~~ 204 (330)
T PF11707_consen 129 SIRTNFIRFWLSFLSSGDPELKRDLLSQKKLMSALFKGLRKDPPETVILILETLKDKVLKDSS-V---SRSTKCKLFNEW 204 (330)
T ss_pred CHHHHHHHHHHHHHccCCHHHHHHHHHcCchHHHHHhcccCCCHHHHHHHHHHHHHHhccCCC-C---ChhhhhhhcCHH
Confidence 7787777544 4443 677788887765 5677788888888899999999999854433331 1 245677788888
Q ss_pred hHHHHHHhhcCCCH----HHHHHHHHHHHHhhcCCccHHHHH------------------------hcCcHHHHHHHHhc
Q 006114 583 ALEWLIANSKTNSA----STRRHVELALCHLAQNEDNARDFI------------------------SRGGAKELVQISIE 634 (660)
Q Consensus 583 ~v~~Lv~lL~s~d~----~vr~~Aa~AL~nLa~~~e~~~~Iv------------------------e~G~l~~Lv~lL~s 634 (660)
++..|..+....++ .++..|-..|..+|.++.+-...- ..+.+-.++..++-
T Consensus 205 ~L~~l~~Ly~~~~~~~~~~~~~~vh~fL~~lcT~p~~Gv~f~d~~~~~~~~~~~~~~~~~~~~~~~~Nk~L~~ll~~lkp 284 (330)
T PF11707_consen 205 TLSQLASLYSRDGEDEKSSVADLVHEFLLALCTDPKHGVCFPDNGWYPRESDSGVPVTINNKSFKINNKLLLNLLKKLKP 284 (330)
T ss_pred HHHHHHHHhcccCCcccchHHHHHHHHHHHHhcCCCcccccCCCCcCcCcccccccccccCCCCCcccHHHHHHHHHCCC
Confidence 99999998888777 899999999999997663311111 13445555665554
Q ss_pred CChHHHHHHHHHHHhcCcchhh
Q 006114 635 SSREDIRNLAKKTMKSNPRLQA 656 (660)
Q Consensus 635 ~s~~~ir~~A~~~L~~~p~~~~ 656 (660)
.++...++.+.++|.++|.+-+
T Consensus 285 ~e~~~q~~Lvl~Il~~~PeLva 306 (330)
T PF11707_consen 285 WEDDRQQELVLKILKACPELVA 306 (330)
T ss_pred CccHHHHHHHHHHHHHChHHHH
Confidence 4566689999999999998754
No 159
>KOG0212 consensus Uncharacterized conserved protein [Function unknown]
Probab=96.05 E-value=0.1 Score=59.03 Aligned_cols=193 Identities=15% Similarity=0.119 Sum_probs=134.3
Q ss_pred CHHHHHHhhCCCCHHHHHHHHHHHHHh----hCCchhHHHHHHc-CCHHHHHHHHccCCCHHHHHHHHHHHHHhhcCchh
Q 006114 408 GLPKILQLLTSEDPDVQIHAVKVVANL----AAEDINQEKIVEE-GGLDALLLLLRTSQNTTILRVASGAIANLAMNEMN 482 (660)
Q Consensus 408 gI~~LV~LL~s~d~~vr~~Aa~aL~nL----a~~~en~~~Ive~-GgI~~Lv~LL~~s~d~~v~~~Aa~AL~nLA~~~~n 482 (660)
.++-|+.+|..++.+||..+=.+|.++ ...|..- +. ..++.++.-+. ++++.++..|..-|.-+..-+..
T Consensus 209 ~ldGLf~~LsD~s~eVr~~~~t~l~~fL~eI~s~P~s~----d~~~~i~vlv~~l~-ss~~~iq~~al~Wi~efV~i~g~ 283 (675)
T KOG0212|consen 209 LLDGLFNMLSDSSDEVRTLTDTLLSEFLAEIRSSPSSM----DYDDMINVLVPHLQ-SSEPEIQLKALTWIQEFVKIPGR 283 (675)
T ss_pred HHHHHHHHhcCCcHHHHHHHHHHHHHHHHHHhcCcccc----Ccccchhhcccccc-CCcHHHHHHHHHHHHHHhcCCCc
Confidence 456677888899999997766655553 3344321 22 24777888886 78999999887777777665665
Q ss_pred HHHHHhcCccHHHHHhhcCCCCHHHHHH---HHHHHHHHhcChhHHHHHHhc-cHHHHHHHHhcCCCHHHHHHHHHHHHH
Q 006114 483 QGLIMSRGGGQLLAKTASKTDDPQTLRM---VAGALANLCGNEKLHTMLEED-GAIKALLAMVRSGNIDVIAQVARGLAN 558 (660)
Q Consensus 483 ~~~Ive~g~I~~Ll~LL~~s~d~~v~~~---Aa~aLanLa~~~~~r~~iv~~-G~V~~Lv~lL~s~~~~v~~~Al~aLan 558 (660)
.-...-.|++..++.++.+.+...+... .-+.+..++..+..... ++. ..+..+...+.+...+.+..|+.-+..
T Consensus 284 ~~l~~~s~il~~iLpc~s~~e~~~i~~~a~~~n~~l~~l~s~~~~~~~-id~~~ii~vl~~~l~~~~~~tri~~L~Wi~~ 362 (675)
T KOG0212|consen 284 DLLLYLSGILTAILPCLSDTEEMSIKEYAQMVNGLLLKLVSSERLKEE-IDYGSIIEVLTKYLSDDREETRIAVLNWIIL 362 (675)
T ss_pred chhhhhhhhhhhcccCCCCCccccHHHHHHHHHHHHHHHHhhhhhccc-cchHHHHHHHHHHhhcchHHHHHHHHHHHHH
Confidence 5566667888888888876433223322 22445566665555544 443 456778888888999999999888877
Q ss_pred hhccchhhhhhcchhhhHHHhhcChHHHHHHhhcCCCHHHHHHHHHHHHHhhcCCcc
Q 006114 559 FAKCESRAIVQGQRKGRSHLMEDSALEWLIANSKTNSASTRRHVELALCHLAQNEDN 615 (660)
Q Consensus 559 LA~~~~~~~aq~~~e~r~~Li~~G~v~~Lv~lL~s~d~~vr~~Aa~AL~nLa~~~e~ 615 (660)
|-...| |.-....+...+.|+.-|.+.++.|...+...+.++|.++..
T Consensus 363 l~~~~p---------~ql~~h~~~if~tLL~tLsd~sd~vvl~~L~lla~i~~s~~~ 410 (675)
T KOG0212|consen 363 LYHKAP---------GQLLVHNDSIFLTLLKTLSDRSDEVVLLALSLLASICSSSNS 410 (675)
T ss_pred HHhhCc---------chhhhhccHHHHHHHHhhcCchhHHHHHHHHHHHHHhcCccc
Confidence 764322 223344567888999999999999999999999999987643
No 160
>PRK04778 septation ring formation regulator EzrA; Provisional
Probab=96.04 E-value=4.3 Score=47.34 Aligned_cols=61 Identities=26% Similarity=0.318 Sum_probs=29.5
Q ss_pred HHHHHhhHHHHHHhhhhhhhH------------HHHhhhhHHHHHHHHHhhh-----hhhhhhhhhHHHHHHHHHHHh
Q 006114 94 LRESQISYDESMRNLVTRSEF------------LEKENAHLELEVEKILGEL-----NHQKDQNNLKREKIVQLEISL 154 (660)
Q Consensus 94 ~~~~~~~~~~~~~~~~~~~~~------------~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~ 154 (660)
+.+|++.|-+.+..|..=|.- +..+-..+...+...+..| ..+...+..+.+.+.+|--.|
T Consensus 221 ~~~~~~~~P~ql~el~~gy~~m~~~gy~~~~~~i~~~i~~l~~~i~~~~~~l~~l~l~~~~~~~~~i~~~Id~Lyd~l 298 (569)
T PRK04778 221 LKELQTELPDQLQELKAGYRELVEEGYHLDHLDIEKEIQDLKEQIDENLALLEELDLDEAEEKNEEIQERIDQLYDIL 298 (569)
T ss_pred HHHHHHHhhHHHHHHHHHHHHHHHcCCCCCCCChHHHHHHHHHHHHHHHHHHHhcChHHHHHHHHHHHHHHHHHHHHH
Confidence 445555555555555555553 3334444444444433222 445555555566665553333
No 161
>KOG3036 consensus Protein involved in cell differentiation/sexual development [General function prediction only]
Probab=96.03 E-value=0.4 Score=49.40 Aligned_cols=141 Identities=10% Similarity=0.080 Sum_probs=98.1
Q ss_pred HHHHH-HHHHHHHHhhCCchhHHHHHHcCCHHHHHHHH----ccCCCHHHHHHHHHHHHHhhcC--chhHHHHHhcCccH
Q 006114 421 PDVQI-HAVKVVANLAAEDINQEKIVEEGGLDALLLLL----RTSQNTTILRVASGAIANLAMN--EMNQGLIMSRGGGQ 493 (660)
Q Consensus 421 ~~vr~-~Aa~aL~nLa~~~en~~~Ive~GgI~~Lv~LL----~~s~d~~v~~~Aa~AL~nLA~~--~~n~~~Ive~g~I~ 493 (660)
..-|. .|...|.-+|.+|+.+..+..+..--.|-..| .+.+..-+|-.+.|+|+.|..+ .+.-..+...++||
T Consensus 92 qsnRVcnaL~LlQcvASHpdTr~~FL~A~iPlylYpfL~Tt~~~r~fEyLRLtsLGVIgaLvk~dd~eVi~fLl~TeIVP 171 (293)
T KOG3036|consen 92 QSNRVCNALALLQCVASHPDTRRAFLRAHIPLYLYPFLNTTSKSRPFEYLRLTSLGVIGALVKNDDQEVIRFLLTTEIVP 171 (293)
T ss_pred ccchHHHHHHHHHHHhcCcchHHHHHHccChhhhHHhhhccccCCchHHHhHHHHHHHHHHHhcCcHHHHHHHHHhhhHH
Confidence 33443 45555555777999999999875432333444 3345677899999999999876 44455667899999
Q ss_pred HHHHhhcCCCCHHHHHHHHHHHHHHhcChhHHHHHHhc----cHHH-----HHHHHhcCCCHHHHHHHHHHHHHhhcc
Q 006114 494 LLAKTASKTDDPQTLRMVAGALANLCGNEKLHTMLEED----GAIK-----ALLAMVRSGNIDVIAQVARGLANFAKC 562 (660)
Q Consensus 494 ~Ll~LL~~s~d~~v~~~Aa~aLanLa~~~~~r~~iv~~----G~V~-----~Lv~lL~s~~~~v~~~Al~aLanLA~~ 562 (660)
.+++.+.. ++......|+..+..+-.++.+-..++.. -+|. .+..+.+.+++.+...++++..+|+..
T Consensus 172 lCLrime~-GSelSKtvA~fIlqKIlldD~GL~YiCqt~eRF~av~~~L~kmv~~l~~~ps~RllKhviRcYlrLsdn 248 (293)
T KOG3036|consen 172 LCLRIMES-GSELSKTVATFILQKILLDDVGLYYICQTAERFSAVALVLGKMVFQLVSMPSPRLLKHVIRCYLRLSDN 248 (293)
T ss_pred HHHHHHhc-ccHHHHHHHHHHHHHHhhccccHHHHHHhHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHhcCC
Confidence 99999964 66666777777777777777665555532 2222 233445678899999999999999843
No 162
>PF11698 V-ATPase_H_C: V-ATPase subunit H; InterPro: IPR011987 ATPases (or ATP synthases) are membrane-bound enzyme complexes/ion transporters that combine ATP synthesis and/or hydrolysis with the transport of protons across a membrane. ATPases can harness the energy from a proton gradient, using the flux of ions across the membrane via the ATPase proton channel to drive the synthesis of ATP. Some ATPases work in reverse, using the energy from the hydrolysis of ATP to create a proton gradient. There are different types of ATPases, which can differ in function (ATP synthesis and/or hydrolysis), structure (e.g., F-, V- and A-ATPases, which contain rotary motors) and in the type of ions they transport [, ]. The different types include: F-ATPases (F1F0-ATPases), which are found in mitochondria, chloroplasts and bacterial plasma membranes where they are the prime producers of ATP, using the proton gradient generated by oxidative phosphorylation (mitochondria) or photosynthesis (chloroplasts). V-ATPases (V1V0-ATPases), which are primarily found in eukaryotic vacuoles and catalyse ATP hydrolysis to transport solutes and lower pH in organelles. A-ATPases (A1A0-ATPases), which are found in Archaea and function like F-ATPases (though with respect to their structure and some inhibitor responses, A-ATPases are more closely related to the V-ATPases). P-ATPases (E1E2-ATPases), which are found in bacteria and in eukaryotic plasma membranes and organelles, and function to transport a variety of different ions across membranes. E-ATPases, which are cell-surface enzymes that hydrolyse a range of NTPs, including extracellular ATP. V-ATPases (also known as V1V0-ATPase or vacuolar ATPase) (3.6.3.14 from EC) are found in the eukaryotic endomembrane system, and in the plasma membrane of prokaryotes and certain specialised eukaryotic cells. V-ATPases hydrolyse ATP to drive a proton pump, and are involved in a variety of vital intra- and inter-cellular processes such as receptor mediated endocytosis, protein trafficking, active transport of metabolites, homeostasis and neurotransmitter release []. V-ATPases are composed of two linked complexes: the V1 complex (subunits A-H) contains the catalytic core that hydrolyses ATP, while the V0 complex (subunits a, c, c', c'', d) forms the membrane-spanning pore. V-ATPases may have an additional role in membrane fusion through binding to t-SNARE proteins []. This entry represents the C-terminal domain of subunit H (also known as Vma13p) found in the V1 complex of V-ATPases. This subunit has a regulatory function, being responsible for activating ATPase activity and coupling ATPase activity to proton flow []. The yeast enzyme contains five motifs similar to the HEAT or Armadillo repeats seen in the importins, and can be divided into two distinct domains: a large N-terminal domain consisting of stacked alpha helices, and a smaller C-terminal alpha-helical domain with a similar superhelical topology to an armadillo repeat []. More information about this protein can be found at Protein of the Month: ATP Synthases [].; GO: 0016820 hydrolase activity, acting on acid anhydrides, catalyzing transmembrane movement of substances, 0015991 ATP hydrolysis coupled proton transport, 0000221 vacuolar proton-transporting V-type ATPase, V1 domain; PDB: 1HO8_A.
Probab=96.03 E-value=0.015 Score=53.46 Aligned_cols=70 Identities=17% Similarity=0.236 Sum_probs=60.9
Q ss_pred ccHHHHHhhcCCCCHHHHHHHHHHHHHHh-cChhHHHHHHhccHHHHHHHHhcCCCHHHHHHHHHHHHHhh
Q 006114 491 GGQLLAKTASKTDDPQTLRMVAGALANLC-GNEKLHTMLEEDGAIKALLAMVRSGNIDVIAQVARGLANFA 560 (660)
Q Consensus 491 ~I~~Ll~LL~~s~d~~v~~~Aa~aLanLa-~~~~~r~~iv~~G~V~~Lv~lL~s~~~~v~~~Al~aLanLA 560 (660)
.+..|+.+|..+.||.+...||.=|+.++ ..|.++..+-..|+=..++.+|.++|++|+..|+.|+.-+-
T Consensus 44 llk~L~~lL~~s~d~~~laVac~Dig~~vr~~p~gr~ii~~lg~K~~vM~Lm~h~d~eVr~eAL~avQklm 114 (119)
T PF11698_consen 44 LLKKLIKLLDKSDDPTTLAVACHDIGEFVRHYPNGRNIIEKLGAKERVMELMNHEDPEVRYEALLAVQKLM 114 (119)
T ss_dssp HHHHHHHHH-SHHHHHHHHHHHHHHHHHHHH-GGGHHHHHHHSHHHHHHHHTS-SSHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHccCCCcceeehhhcchHHHHHHChhHHHHHHhcChHHHHHHHhcCCCHHHHHHHHHHHHHHH
Confidence 57889999976779999999999999998 78999999989999999999999999999999999997765
No 163
>KOG0976 consensus Rho/Rac1-interacting serine/threonine kinase Citron [Signal transduction mechanisms]
Probab=96.01 E-value=4.7 Score=47.58 Aligned_cols=136 Identities=18% Similarity=0.150 Sum_probs=74.0
Q ss_pred HHHHHHHHHHHHHHHHHhhhhchHHHHHHHHHHHhhHHHHHHhhhhhhh----HHHHhhhhHHHHHHHHHhhhhhhhhhh
Q 006114 65 LVTQVELLTAKIEMQQKLRENDKYEFEKQLRESQISYDESMRNLVTRSE----FLEKENAHLELEVEKILGELNHQKDQN 140 (660)
Q Consensus 65 ~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~ 140 (660)
++.+++++|.+|-... .|| -.|..|.+.++.-.++++ ||+-.+.-+++-|..+..-..--.+..
T Consensus 219 e~~~~q~~tq~vl~ev-----------~QL-ss~~q~ltp~rk~~s~i~E~d~~lq~sak~ieE~m~qlk~kns~L~~El 286 (1265)
T KOG0976|consen 219 ELHKDQENTQKVLKEV-----------MQL-SSQKQTLTPLRKTCSMIEEQDMDLQASAKEIEEKMRQLKAKNSVLGDEL 286 (1265)
T ss_pred HHHHHHHHHHHHHHHH-----------HHH-HHhHhhhhhHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhh
Confidence 4566777766653221 122 356778887776555554 666666666666666554443333333
Q ss_pred hhHHHHHHHHHHHhhhhhhhh---hhhhhh-HHHHHHhhHHHHHHHHHHHHHHHHHHhhhhchHHHHHHHHHHHhh
Q 006114 141 NLKREKIVQLEISLKNSKQQQ---LDNSSY-QKVLADTTQMYEKKITELIKQLEIEHARSEGAEEQVDTMKKLISD 212 (660)
Q Consensus 141 ~~~~~~~~~~~~~~~~~~~~~---~~~~~~-~~~~~~~~~~~~~~~~~l~~~l~~e~~~~~~~~~~~~~l~~~l~~ 212 (660)
+.....+..+--+|...+|-. ...++. .+.+.-++..+-.++..+.-.|-..+-.-+...|.++.|++.-.+
T Consensus 287 SqkeelVk~~qeeLd~lkqt~t~a~gdseqatkylh~enmkltrqkadirc~LlEarrk~egfddk~~eLEKkrd~ 362 (1265)
T KOG0976|consen 287 SQKEELVKELQEELDTLKQTRTRADGDSEQATKYLHLENMKLTRQKADIRCALLEARRKAEGFDDKLNELEKKRDM 362 (1265)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcchhHHHHHHHHHHHH
Confidence 333333334433444333322 111111 124555566666667777777766666667777888877765443
No 164
>PRK04778 septation ring formation regulator EzrA; Provisional
Probab=95.96 E-value=4.7 Score=47.07 Aligned_cols=160 Identities=17% Similarity=0.194 Sum_probs=93.9
Q ss_pred HHHHHHHHHHHhhhhhhhhhhhhhhHHHHHHhhHHHHHHHHHHHHHHHHHHhhhhchHHHHHHHHHHHhhhhhhHHHHhh
Q 006114 143 KREKIVQLEISLKNSKQQQLDNSSYQKVLADTTQMYEKKITELIKQLEIEHARSEGAEEQVDTMKKLISDNQKSIEQYEM 222 (660)
Q Consensus 143 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~e~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~ 222 (660)
+..++..+.-.+.++.. +=.+...+.....+...+..|..|--.++.|..-+...+.....+...+.+.+ .
T Consensus 254 i~~~i~~l~~~i~~~~~--~l~~l~l~~~~~~~~~i~~~Id~Lyd~lekE~~A~~~vek~~~~l~~~l~~~~-------e 324 (569)
T PRK04778 254 IEKEIQDLKEQIDENLA--LLEELDLDEAEEKNEEIQERIDQLYDILEREVKARKYVEKNSDTLPDFLEHAK-------E 324 (569)
T ss_pred hHHHHHHHHHHHHHHHH--HHHhcChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHH-------H
Confidence 34445555444444221 01122334566777788888888888888888888888777777777777777 5
Q ss_pred hhhHHHHHHhhHHHHHHHHHHHHhhhhhhhhhhhhhhHHhHHHHHHHhhhhh-ccccchhHHHHHHHHHHHHHHHHHhHH
Q 006114 223 ENSTYQKALADTTQLYEKKIAELNKKLEDEHACFEGAVEQLDMVKKLLSDYQ-NSNQGQKEVHELCVKLKETRQLHESAV 301 (660)
Q Consensus 223 ~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~e~~~Lk~~Le~e~~~~e~~e 301 (660)
.|......+....+.|.=- ++|-.+..+.+++|..+.+-+...+ ...........++..++......+..+
T Consensus 325 ~~~~l~~Ei~~l~~sY~l~--------~~e~~~~~~lekeL~~Le~~~~~~~~~i~~~~~~ysel~e~leel~e~leeie 396 (569)
T PRK04778 325 QNKELKEEIDRVKQSYTLN--------ESELESVRQLEKQLESLEKQYDEITERIAEQEIAYSELQEELEEILKQLEEIE 396 (569)
T ss_pred HHHHHHHHHHHHHHccccC--------chhHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHH
Confidence 5666666666666665310 4444555555555555555544222 223333334666666666666666666
Q ss_pred HHHHHHHHHHHHHHHhhh
Q 006114 302 YEVQTLKSEYKNLLEEKE 319 (660)
Q Consensus 302 ~E~~~lks~l~~l~~~~~ 319 (660)
.+...++..+..+.....
T Consensus 397 ~eq~ei~e~l~~Lrk~E~ 414 (569)
T PRK04778 397 KEQEKLSEMLQGLRKDEL 414 (569)
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 666666666655554433
No 165
>KOG0212 consensus Uncharacterized conserved protein [Function unknown]
Probab=95.91 E-value=0.033 Score=62.78 Aligned_cols=224 Identities=13% Similarity=0.113 Sum_probs=133.3
Q ss_pred CCCHHHHHHhhCCCCHHHHHHHHHHHHHhhCCchhHHHHHHcCCHHHHHHHHccCCCHHHHHHHHHHHHHhhcC--chhH
Q 006114 406 EVGLPKILQLLTSEDPDVQIHAVKVVANLAAEDINQEKIVEEGGLDALLLLLRTSQNTTILRVASGAIANLAMN--EMNQ 483 (660)
Q Consensus 406 ~ggI~~LV~LL~s~d~~vr~~Aa~aL~nLa~~~en~~~Ive~GgI~~Lv~LL~~s~d~~v~~~Aa~AL~nLA~~--~~n~ 483 (660)
.+.+|+++..+...+..+|..||..|.|++.-......+.-......|..+.. ++|..|+. ++..+-.+..+ .+-.
T Consensus 83 ~~iv~Pv~~cf~D~d~~vRyyACEsLYNiaKv~k~~v~~~Fn~iFdvL~klsa-Dsd~~V~~-~aeLLdRLikdIVte~~ 160 (675)
T KOG0212|consen 83 EKIVPPVLNCFSDQDSQVRYYACESLYNIAKVAKGEVLVYFNEIFDVLCKLSA-DSDQNVRG-GAELLDRLIKDIVTESA 160 (675)
T ss_pred HHhhHHHHHhccCccceeeeHhHHHHHHHHHHhccCcccchHHHHHHHHHHhc-CCcccccc-HHHHHHHHHHHhccccc
Confidence 46799999999999999999999999999873322222222222333444443 66777655 44444444222 0001
Q ss_pred HHHHhcCccHHHHHhhcCCCCHHHHHHHHHHHHHHhcChhHHHHHHh--ccHHHHHHHHhcCCCHHHHHHHHHHHHHhhc
Q 006114 484 GLIMSRGGGQLLAKTASKTDDPQTLRMVAGALANLCGNEKLHTMLEE--DGAIKALLAMVRSGNIDVIAQVARGLANFAK 561 (660)
Q Consensus 484 ~~Ive~g~I~~Ll~LL~~s~d~~v~~~Aa~aLanLa~~~~~r~~iv~--~G~V~~Lv~lL~s~~~~v~~~Al~aLanLA~ 561 (660)
..+--.+.||.|-.-+.. .+|.++......|.-|-..|+. .|++ ...++-|+.++..++++|+..+=.+|+++-.
T Consensus 161 ~tFsL~~~ipLL~eriy~-~n~~tR~flv~Wl~~Lds~P~~--~m~~yl~~~ldGLf~~LsD~s~eVr~~~~t~l~~fL~ 237 (675)
T KOG0212|consen 161 STFSLPEFIPLLRERIYV-INPMTRQFLVSWLYVLDSVPDL--EMISYLPSLLDGLFNMLSDSSDEVRTLTDTLLSEFLA 237 (675)
T ss_pred cccCHHHHHHHHHHHHhc-CCchHHHHHHHHHHHHhcCCcH--HHHhcchHHHHHHHHHhcCCcHHHHHHHHHHHHHHHH
Confidence 112123344555444443 6888998888888877666655 3333 3577888899999999999888887776642
Q ss_pred ---cchhhhhhcchhhhHHHhhcChHHHHHHhhcCCCHHHHHHHHHHHHHhhcCCccHHHHHhcCcHHHHHHHHhcCChH
Q 006114 562 ---CESRAIVQGQRKGRSHLMEDSALEWLIANSKTNSASTRRHVELALCHLAQNEDNARDFISRGGAKELVQISIESSRE 638 (660)
Q Consensus 562 ---~~~~~~aq~~~e~r~~Li~~G~v~~Lv~lL~s~d~~vr~~Aa~AL~nLa~~~e~~~~Ive~G~l~~Lv~lL~s~s~~ 638 (660)
.+|. .+--...++.++..+.++++.++..|.--+.-+..-+....-.--.|++..++..+.+....
T Consensus 238 eI~s~P~-----------s~d~~~~i~vlv~~l~ss~~~iq~~al~Wi~efV~i~g~~~l~~~s~il~~iLpc~s~~e~~ 306 (675)
T KOG0212|consen 238 EIRSSPS-----------SMDYDDMINVLVPHLQSSEPEIQLKALTWIQEFVKIPGRDLLLYLSGILTAILPCLSDTEEM 306 (675)
T ss_pred HHhcCcc-----------ccCcccchhhccccccCCcHHHHHHHHHHHHHHhcCCCcchhhhhhhhhhhcccCCCCCccc
Confidence 1111 11224567788888888888888776655555554333322233345555555555433332
Q ss_pred HHHHHHH
Q 006114 639 DIRNLAK 645 (660)
Q Consensus 639 ~ir~~A~ 645 (660)
.++..|.
T Consensus 307 ~i~~~a~ 313 (675)
T KOG0212|consen 307 SIKEYAQ 313 (675)
T ss_pred cHHHHHH
Confidence 3444444
No 166
>KOG0971 consensus Microtubule-associated protein dynactin DCTN1/Glued [Cell cycle control, cell division, chromosome partitioning; Cytoskeleton]
Probab=95.90 E-value=2.2 Score=50.88 Aligned_cols=41 Identities=34% Similarity=0.378 Sum_probs=27.7
Q ss_pred hHHHHHHHHHHHHH--------HHHHhhhhchHHHHHH-HHHHHhhHHHH
Q 006114 64 NLVTQVELLTAKIE--------MQQKLRENDKYEFEKQ-LRESQISYDES 104 (660)
Q Consensus 64 ~~~~~~~~~~~~~~--------~~~~~~~~~~~~~e~~-~~~~~~~~~~~ 104 (660)
.|+.||-.||.++| -+.||++-||+.++.+ |-|.+-..++.
T Consensus 228 eLr~QvrdLtEkLetlR~kR~EDk~Kl~ElekmkiqleqlqEfkSkim~q 277 (1243)
T KOG0971|consen 228 ELRAQVRDLTEKLETLRLKRAEDKAKLKELEKMKIQLEQLQEFKSKIMEQ 277 (1243)
T ss_pred HHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 37888888888875 4567777777777663 55555555554
No 167
>KOG1059 consensus Vesicle coat complex AP-3, delta subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=95.86 E-value=0.4 Score=55.73 Aligned_cols=177 Identities=14% Similarity=0.145 Sum_probs=118.0
Q ss_pred HHHHHHhhCCCCHHHHHHHHHHHHHhhC-CchhHHHHHHcCCHHHHHHHHccCCCHHHHHHHHHHHHHhhcC-chhHHHH
Q 006114 409 LPKILQLLTSEDPDVQIHAVKVVANLAA-EDINQEKIVEEGGLDALLLLLRTSQNTTILRVASGAIANLAMN-EMNQGLI 486 (660)
Q Consensus 409 I~~LV~LL~s~d~~vr~~Aa~aL~nLa~-~~en~~~Ive~GgI~~Lv~LL~~s~d~~v~~~Aa~AL~nLA~~-~~n~~~I 486 (660)
.+-++.+|.+..+.+|..|+.++..+.. .|+. +. .+.|.|+.-|. ++||.|+..|..+++-||.- |.|.-.+
T Consensus 146 a~Dv~tLL~sskpYvRKkAIl~lykvFLkYPeA---lr--~~FprL~EkLe-DpDp~V~SAAV~VICELArKnPknyL~L 219 (877)
T KOG1059|consen 146 ADDVFTLLNSSKPYVRKKAILLLYKVFLKYPEA---LR--PCFPRLVEKLE-DPDPSVVSAAVSVICELARKNPQNYLQL 219 (877)
T ss_pred HHHHHHHHhcCchHHHHHHHHHHHHHHHhhhHh---Hh--hhHHHHHHhcc-CCCchHHHHHHHHHHHHHhhCCcccccc
Confidence 4568899999999999999999988766 3422 11 25889999997 89999999999999999965 6654332
Q ss_pred HhcCccHHHHHhhcCCCCHHHHHHHHHHHHHHh-cChhHHHHHHhccHHHHHHHHhcCCCH-HHHHHHHHHHH--Hhhcc
Q 006114 487 MSRGGGQLLAKTASKTDDPQTLRMVAGALANLC-GNEKLHTMLEEDGAIKALLAMVRSGNI-DVIAQVARGLA--NFAKC 562 (660)
Q Consensus 487 ve~g~I~~Ll~LL~~s~d~~v~~~Aa~aLanLa-~~~~~r~~iv~~G~V~~Lv~lL~s~~~-~v~~~Al~aLa--nLA~~ 562 (660)
-|.+..+|..+.+-.+..-.....++|+ ..|.+.. ..+++|.+++.++.. .+...|+.++- ++..+
T Consensus 220 -----AP~ffkllttSsNNWmLIKiiKLF~aLtplEPRLgK-----KLieplt~li~sT~AmSLlYECvNTVVa~s~s~g 289 (877)
T KOG1059|consen 220 -----APLFYKLLVTSSNNWVLIKLLKLFAALTPLEPRLGK-----KLIEPITELMESTVAMSLLYECVNTVVAVSMSSG 289 (877)
T ss_pred -----cHHHHHHHhccCCCeehHHHHHHHhhccccCchhhh-----hhhhHHHHHHHhhHHHHHHHHHHHHheeehhccC
Confidence 4778888877777788888888888888 4454433 567888888887653 44555555543 22222
Q ss_pred chhhhhhcchhhhHHHhhcChHHHHHHhhcCCCHHHHHHHHHHHHHhhc
Q 006114 563 ESRAIVQGQRKGRSHLMEDSALEWLIANSKTNSASTRRHVELALCHLAQ 611 (660)
Q Consensus 563 ~~~~~aq~~~e~r~~Li~~G~v~~Lv~lL~s~d~~vr~~Aa~AL~nLa~ 611 (660)
.|+. -..+ .=++..|-.++.+.|+.++=.++.|++.++.
T Consensus 290 ~~d~--------~asi--qLCvqKLr~fiedsDqNLKYlgLlam~KI~k 328 (877)
T KOG1059|consen 290 MSDH--------SASI--QLCVQKLRIFIEDSDQNLKYLGLLAMSKILK 328 (877)
T ss_pred CCCc--------HHHH--HHHHHHHhhhhhcCCccHHHHHHHHHHHHhh
Confidence 1110 0000 1134444445555666666666666666654
No 168
>PF09726 Macoilin: Transmembrane protein; InterPro: IPR019130 This entry represents the multi-pass transmembrane protein Macoilin, which is highly conserved in eukaryotes. ; GO: 0016021 integral to membrane
Probab=95.86 E-value=2.8 Score=49.94 Aligned_cols=101 Identities=20% Similarity=0.272 Sum_probs=62.8
Q ss_pred HHHHhhHHHHHHHHHHHHHHHHHhhhhchHHHHHHHHHHHhhHHHHHHhhhhhhhHHHHhhhhHHHHHHHHHhhhhhhhh
Q 006114 59 DEAKDNLVTQVELLTAKIEMQQKLRENDKYEFEKQLRESQISYDESMRNLVTRSEFLEKENAHLELEVEKILGELNHQKD 138 (660)
Q Consensus 59 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 138 (660)
.++..+|+..|..|.+++.- -+..|.+|+-==.++...=+.++.-...+.++|-.|+..+-.|-...|+-|.
T Consensus 417 ~~a~~rLE~dvkkLraeLq~--------~Rq~E~ELRsqis~l~~~Er~lk~eL~qlr~ene~Lq~Kl~~L~~aRq~DKq 488 (697)
T PF09726_consen 417 PDAISRLEADVKKLRAELQS--------SRQSEQELRSQISSLTNNERSLKSELSQLRQENEQLQNKLQNLVQARQQDKQ 488 (697)
T ss_pred hHHHHHHHHHHHHHHHHHHh--------hhhhHHHHHHHHhhccccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 55666777777777777654 3445666665444566555666667778888888888888888777777766
Q ss_pred hhhhHHHHHHHHHHHhhhhhhhhhhhhhhH
Q 006114 139 QNNLKREKIVQLEISLKNSKQQQLDNSSYQ 168 (660)
Q Consensus 139 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 168 (660)
.-..+++++.. |...+..-..||-+..+.
T Consensus 489 ~l~~LEkrL~e-E~~~R~~lEkQL~eErk~ 517 (697)
T PF09726_consen 489 SLQQLEKRLAE-ERRQRASLEKQLQEERKA 517 (697)
T ss_pred HHHHHHHHHHH-HHHHHHHHHHHHHHHHHH
Confidence 55555444333 344444444455444333
No 169
>PF11698 V-ATPase_H_C: V-ATPase subunit H; InterPro: IPR011987 ATPases (or ATP synthases) are membrane-bound enzyme complexes/ion transporters that combine ATP synthesis and/or hydrolysis with the transport of protons across a membrane. ATPases can harness the energy from a proton gradient, using the flux of ions across the membrane via the ATPase proton channel to drive the synthesis of ATP. Some ATPases work in reverse, using the energy from the hydrolysis of ATP to create a proton gradient. There are different types of ATPases, which can differ in function (ATP synthesis and/or hydrolysis), structure (e.g., F-, V- and A-ATPases, which contain rotary motors) and in the type of ions they transport [, ]. The different types include: F-ATPases (F1F0-ATPases), which are found in mitochondria, chloroplasts and bacterial plasma membranes where they are the prime producers of ATP, using the proton gradient generated by oxidative phosphorylation (mitochondria) or photosynthesis (chloroplasts). V-ATPases (V1V0-ATPases), which are primarily found in eukaryotic vacuoles and catalyse ATP hydrolysis to transport solutes and lower pH in organelles. A-ATPases (A1A0-ATPases), which are found in Archaea and function like F-ATPases (though with respect to their structure and some inhibitor responses, A-ATPases are more closely related to the V-ATPases). P-ATPases (E1E2-ATPases), which are found in bacteria and in eukaryotic plasma membranes and organelles, and function to transport a variety of different ions across membranes. E-ATPases, which are cell-surface enzymes that hydrolyse a range of NTPs, including extracellular ATP. V-ATPases (also known as V1V0-ATPase or vacuolar ATPase) (3.6.3.14 from EC) are found in the eukaryotic endomembrane system, and in the plasma membrane of prokaryotes and certain specialised eukaryotic cells. V-ATPases hydrolyse ATP to drive a proton pump, and are involved in a variety of vital intra- and inter-cellular processes such as receptor mediated endocytosis, protein trafficking, active transport of metabolites, homeostasis and neurotransmitter release []. V-ATPases are composed of two linked complexes: the V1 complex (subunits A-H) contains the catalytic core that hydrolyses ATP, while the V0 complex (subunits a, c, c', c'', d) forms the membrane-spanning pore. V-ATPases may have an additional role in membrane fusion through binding to t-SNARE proteins []. This entry represents the C-terminal domain of subunit H (also known as Vma13p) found in the V1 complex of V-ATPases. This subunit has a regulatory function, being responsible for activating ATPase activity and coupling ATPase activity to proton flow []. The yeast enzyme contains five motifs similar to the HEAT or Armadillo repeats seen in the importins, and can be divided into two distinct domains: a large N-terminal domain consisting of stacked alpha helices, and a smaller C-terminal alpha-helical domain with a similar superhelical topology to an armadillo repeat []. More information about this protein can be found at Protein of the Month: ATP Synthases [].; GO: 0016820 hydrolase activity, acting on acid anhydrides, catalyzing transmembrane movement of substances, 0015991 ATP hydrolysis coupled proton transport, 0000221 vacuolar proton-transporting V-type ATPase, V1 domain; PDB: 1HO8_A.
Probab=95.85 E-value=0.02 Score=52.79 Aligned_cols=72 Identities=18% Similarity=0.251 Sum_probs=61.0
Q ss_pred cHHHHHHHHhc-CCCHHHHHHHHHHHHHhhccchhhhhhcchhhhHHHhhcChHHHHHHhhcCCCHHHHHHHHHHHHHhh
Q 006114 532 GAIKALLAMVR-SGNIDVIAQVARGLANFAKCESRAIVQGQRKGRSHLMEDSALEWLIANSKTNSASTRRHVELALCHLA 610 (660)
Q Consensus 532 G~V~~Lv~lL~-s~~~~v~~~Al~aLanLA~~~~~~~aq~~~e~r~~Li~~G~v~~Lv~lL~s~d~~vr~~Aa~AL~nLa 610 (660)
..+..|+.+|. +.++.+...||.-|+.++.. +|.||..+-..|+-..++.++.++|+.|+..|..|+..|-
T Consensus 43 ~llk~L~~lL~~s~d~~~laVac~Dig~~vr~--------~p~gr~ii~~lg~K~~vM~Lm~h~d~eVr~eAL~avQklm 114 (119)
T PF11698_consen 43 ELLKKLIKLLDKSDDPTTLAVACHDIGEFVRH--------YPNGRNIIEKLGAKERVMELMNHEDPEVRYEALLAVQKLM 114 (119)
T ss_dssp HHHHHHHHHH-SHHHHHHHHHHHHHHHHHHHH---------GGGHHHHHHHSHHHHHHHHTS-SSHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHccCCCcceeehhhcchHHHHHH--------ChhHHHHHHhcChHHHHHHHhcCCCHHHHHHHHHHHHHHH
Confidence 46788999994 66888999999999999975 4678888888999999999999999999999999998764
Q ss_pred c
Q 006114 611 Q 611 (660)
Q Consensus 611 ~ 611 (660)
.
T Consensus 115 ~ 115 (119)
T PF11698_consen 115 V 115 (119)
T ss_dssp H
T ss_pred H
Confidence 3
No 170
>KOG2259 consensus Uncharacterized conserved protein [Function unknown]
Probab=95.84 E-value=0.087 Score=60.45 Aligned_cols=215 Identities=13% Similarity=0.107 Sum_probs=127.8
Q ss_pred hhcccCCCccccccchhhh-hhcCchhHHHHHhCCCHHHHHHhhCCCCHHHHHHHHHHHHHhhC-C-----ch-hHHHHH
Q 006114 374 GSSRFGAPMSLQKSNPSRE-LSGQRATIAKICDEVGLPKILQLLTSEDPDVQIHAVKVVANLAA-E-----DI-NQEKIV 445 (660)
Q Consensus 374 l~~~L~~~~~~vr~~~~~~-laa~~~~~~~I~e~ggI~~LV~LL~s~d~~vr~~Aa~aL~nLa~-~-----~e-n~~~Iv 445 (660)
+..-.++-++.|+.+++.. ++-++. .+ .........+.++..++..||..|+.++.-.+. . .+ +.....
T Consensus 203 l~~~~~~~D~~Vrt~A~eglL~L~eg-~k--L~~~~Y~~A~~~lsD~~e~VR~aAvqlv~v~gn~~p~~~e~e~~e~kl~ 279 (823)
T KOG2259|consen 203 LIYLEHDQDFRVRTHAVEGLLALSEG-FK--LSKACYSRAVKHLSDDYEDVRKAAVQLVSVWGNRCPAPLERESEEEKLK 279 (823)
T ss_pred HHHHhcCCCcchHHHHHHHHHhhccc-cc--ccHHHHHHHHHHhcchHHHHHHHHHHHHHHHHhcCCCcccchhhhhhhH
Confidence 4444455555556555555 333221 00 011235667788889999999998766654433 2 11 122222
Q ss_pred HcCCHHHHHHHHccCCCHHHHHHHHHHHHHhhcC-chhHH----------------------------------------
Q 006114 446 EEGGLDALLLLLRTSQNTTILRVASGAIANLAMN-EMNQG---------------------------------------- 484 (660)
Q Consensus 446 e~GgI~~Lv~LL~~s~d~~v~~~Aa~AL~nLA~~-~~n~~---------------------------------------- 484 (660)
+. +...+...++ +..-.|+..|+.+|+.+-.. .+.-.
T Consensus 280 D~-aF~~vC~~v~-D~sl~VRV~AaK~lG~~~~vSee~i~QTLdKKlms~lRRkr~ahkrpk~l~s~GewSsGk~~~adv 357 (823)
T KOG2259|consen 280 DA-AFSSVCRAVR-DRSLSVRVEAAKALGEFEQVSEEIIQQTLDKKLMSRLRRKRTAHKRPKALYSSGEWSSGKEWNADV 357 (823)
T ss_pred HH-HHHHHHHHHh-cCceeeeehHHHHhchHHHhHHHHHHHHHHHHHhhhhhhhhhcccchHHHHhcCCcccCccccccC
Confidence 22 4566666666 55566777777777766432 11100
Q ss_pred ----------HHHhcCccHHHHHhhcCCCCHHHHHHHHHHHHHHh-cChhHHHHHHhccHHHHHHHHhcCCCHHHHHHHH
Q 006114 485 ----------LIMSRGGGQLLAKTASKTDDPQTLRMVAGALANLC-GNEKLHTMLEEDGAIKALLAMVRSGNIDVIAQVA 553 (660)
Q Consensus 485 ----------~Ive~g~I~~Ll~LL~~s~d~~v~~~Aa~aLanLa-~~~~~r~~iv~~G~V~~Lv~lL~s~~~~v~~~Al 553 (660)
.|+..|+--+++.-|.+ .--+|+.+|...++.|+ ..|.... .++..|++|+......|+..|+
T Consensus 358 psee~d~~~~siI~sGACGA~VhGlED-Ef~EVR~AAV~Sl~~La~ssP~FA~-----~aldfLvDMfNDE~~~VRL~ai 431 (823)
T KOG2259|consen 358 PSEEDDEEEESIIPSGACGALVHGLED-EFYEVRRAAVASLCSLATSSPGFAV-----RALDFLVDMFNDEIEVVRLKAI 431 (823)
T ss_pred chhhccccccccccccccceeeeechH-HHHHHHHHHHHHHHHHHcCCCCcHH-----HHHHHHHHHhccHHHHHHHHHH
Confidence 11122233334444432 23478888889999987 4555544 4678899999988899999999
Q ss_pred HHHHHhhccchhhhhhcchhhhHHHhhcChHHHHHHhhcCCCHHHHHHHHHHHHHhhcCC
Q 006114 554 RGLANFAKCESRAIVQGQRKGRSHLMEDSALEWLIANSKTNSASTRRHVELALCHLAQNE 613 (660)
Q Consensus 554 ~aLanLA~~~~~~~aq~~~e~r~~Li~~G~v~~Lv~lL~s~d~~vr~~Aa~AL~nLa~~~ 613 (660)
.+|..|+.. .-+...-++.+...|.+.+..+|.++-..|++.-...
T Consensus 432 ~aL~~Is~~--------------l~i~eeql~~il~~L~D~s~dvRe~l~elL~~~~~~d 477 (823)
T KOG2259|consen 432 FALTMISVH--------------LAIREEQLRQILESLEDRSVDVREALRELLKNARVSD 477 (823)
T ss_pred HHHHHHHHH--------------heecHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCCc
Confidence 999988853 2334556677777777777777777666666554433
No 171
>PF09730 BicD: Microtubule-associated protein Bicaudal-D; InterPro: IPR018477 BicD proteins consist of three coiled-coiled domains and are involved in dynein-mediated minus end-directed transport from the Golgi apparatus to the endoplasmic reticulum (ER) []. Glycogen synthase kinase-3beta (GSK-3beta) is required for the binding of BICD to dynein but not to dynactin, acting to maintain the anchoring of microtubules to the centromere []. It appears that amino-acid residues 437-617 of BicD and the kinase activity of GSK-3 are necessary for the formation of a complex between BicD and GSK-3beta in intact cells [].; GO: 0006810 transport, 0005794 Golgi apparatus
Probab=95.83 E-value=0.58 Score=55.35 Aligned_cols=157 Identities=22% Similarity=0.228 Sum_probs=112.8
Q ss_pred hhHHHHHHHHHHHhhhhhhhhhhhhhhHHHHHHhhHHHHHHHHHHHHHHHHHHhhhhchHHHHHHHHHHHhhhhhhHHHH
Q 006114 141 NLKREKIVQLEISLKNSKQQQLDNSSYQKVLADTTQMYEKKITELIKQLEIEHARSEGAEEQVDTMKKLISDNQKSIEQY 220 (660)
Q Consensus 141 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~e~~~~~~~~~~~~~l~~~l~~~~~~~~~~ 220 (660)
..+..++..|+.+||+.++. +.| .--++.++...+.++.+..+.--..+..|.+++..+|..-.-+-+-+...
T Consensus 30 ~~~~~~i~~l~~elk~~~~~-~~~------~~~e~~rl~~~~~~~~~~~~~~e~~~~~lr~e~ke~K~rE~rll~dysel 102 (717)
T PF09730_consen 30 AYLQQRILELENELKQLRQE-LSN------VQAENERLSQLNQELRKECEDLELERKRLREEIKEYKFREARLLQDYSEL 102 (717)
T ss_pred HHHHHHHHHHHHHHHHHHHH-HHH------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHH
Confidence 34455666677777665443 222 22345566666777777777777777778888888887766666666688
Q ss_pred hhhhhHHHHHHhhHHHHHHHHHHHHhhhhhhhhhhhhhhHHhHHHHHHHhhhhhccccchhHHHHHHHHHHHHHHHHHhH
Q 006114 221 EMENSTYQKALADTTQLYEKKIAELNKKLEDEHACFEGAVEQLDMVKKLLSDYQNSNQGQKEVHELCVKLKETRQLHESA 300 (660)
Q Consensus 221 ~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~Lk~~Le~e~~~~e~~ 300 (660)
+-||+++||+++ .++++.-| +|-..++...+
T Consensus 103 EeENislQKqvs------------------------------------------~Lk~sQve-------fE~~Khei~rl 133 (717)
T PF09730_consen 103 EEENISLQKQVS------------------------------------------VLKQSQVE-------FEGLKHEIKRL 133 (717)
T ss_pred HHHHHHHHHHHH------------------------------------------HHHHhHHH-------HHHHHHHHHHH
Confidence 899999999998 55555444 44555667788
Q ss_pred HHHHHHHHHHHHHHHHhhhhccHHHHHHHHHHHHHHHHhhhhHHHHHHHHhhC
Q 006114 301 VYEVQTLKSEYKNLLEEKETMSDELQAARQRLLVEEKQRKAIEYELVKLKKTA 353 (660)
Q Consensus 301 e~E~~~lks~l~~l~~~~~~~~eel~~~~k~l~~e~~~rkkLe~E~~~l~~~l 353 (660)
++|+.-|++++.+...-+...+-.+......++.|=-++..|.-|++..+...
T Consensus 134 ~Ee~~~l~~qlee~~rLk~iae~qleEALesl~~EReqk~~LrkEL~~~~~~~ 186 (717)
T PF09730_consen 134 EEEIELLNSQLEEAARLKEIAEKQLEEALESLKSEREQKNALRKELDQHLNIE 186 (717)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcc
Confidence 88889999999888888887777788888888888888889999998855433
No 172
>KOG3036 consensus Protein involved in cell differentiation/sexual development [General function prediction only]
Probab=95.82 E-value=0.39 Score=49.49 Aligned_cols=155 Identities=12% Similarity=-0.009 Sum_probs=107.1
Q ss_pred HHHHHHHHHHHHhhcCchhHHHHHhcCccHHHHHhh----cCCCCHHHHHHHHHHHHHHh--cChhHHHHHHhccHHHHH
Q 006114 464 TILRVASGAIANLAMNEMNQGLIMSRGGGQLLAKTA----SKTDDPQTLRMVAGALANLC--GNEKLHTMLEEDGAIKAL 537 (660)
Q Consensus 464 ~v~~~Aa~AL~nLA~~~~n~~~Ive~g~I~~Ll~LL----~~s~d~~v~~~Aa~aLanLa--~~~~~r~~iv~~G~V~~L 537 (660)
.-..+|...|-.+|.+|+.+..++.+.+=-.|..+| ++.+..-.+..+.|+|+.|. .+.+....+...++||..
T Consensus 94 nRVcnaL~LlQcvASHpdTr~~FL~A~iPlylYpfL~Tt~~~r~fEyLRLtsLGVIgaLvk~dd~eVi~fLl~TeIVPlC 173 (293)
T KOG3036|consen 94 NRVCNALALLQCVASHPDTRRAFLRAHIPLYLYPFLNTTSKSRPFEYLRLTSLGVIGALVKNDDQEVIRFLLTTEIVPLC 173 (293)
T ss_pred chHHHHHHHHHHHhcCcchHHHHHHccChhhhHHhhhccccCCchHHHhHHHHHHHHHHHhcCcHHHHHHHHHhhhHHHH
Confidence 344567777778889999999999876432333333 34456677888889999998 667788888999999999
Q ss_pred HHHhcCCCHHHHHHHHHHHHHhhccch--hhhhhcchhhhHHHhhcChHHHHHHhhcCCCHHHHHHHHHHHHHhhcCCcc
Q 006114 538 LAMVRSGNIDVIAQVARGLANFAKCES--RAIVQGQRKGRSHLMEDSALEWLIANSKTNSASTRRHVELALCHLAQNEDN 615 (660)
Q Consensus 538 v~lL~s~~~~v~~~Al~aLanLA~~~~--~~~aq~~~e~r~~Li~~G~v~~Lv~lL~s~d~~vr~~Aa~AL~nLa~~~e~ 615 (660)
+..+..++......|+.++.-|-.++. .-+.+ ..-|-..+..-.-..+..+.+.+++.+-.++..+..+|+-++..
T Consensus 174 Lrime~GSelSKtvA~fIlqKIlldD~GL~YiCq--t~eRF~av~~~L~kmv~~l~~~ps~RllKhviRcYlrLsdnpra 251 (293)
T KOG3036|consen 174 LRIMESGSELSKTVATFILQKILLDDVGLYYICQ--TAERFSAVALVLGKMVFQLVSMPSPRLLKHVIRCYLRLSDNPRA 251 (293)
T ss_pred HHHHhcccHHHHHHHHHHHHHHhhccccHHHHHH--hHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHhcCCHHH
Confidence 999999999999999999987765442 01111 01111111111112334455667899999999999999988855
Q ss_pred HHHHH
Q 006114 616 ARDFI 620 (660)
Q Consensus 616 ~~~Iv 620 (660)
+..+.
T Consensus 252 r~aL~ 256 (293)
T KOG3036|consen 252 RAALR 256 (293)
T ss_pred HHHHH
Confidence 54443
No 173
>KOG4643 consensus Uncharacterized coiled-coil protein [Function unknown]
Probab=95.82 E-value=6.5 Score=47.64 Aligned_cols=243 Identities=18% Similarity=0.155 Sum_probs=119.0
Q ss_pred chHHHHHHHHHHHh-----hHHHHHHhhhhhhhHHHHhhhhHHHHHHHHHhhhh---hhhhhhhh-HH-----HHHHHHH
Q 006114 86 DKYEFEKQLRESQI-----SYDESMRNLVTRSEFLEKENAHLELEVEKILGELN---HQKDQNNL-KR-----EKIVQLE 151 (660)
Q Consensus 86 ~~~~~e~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~-~~-----~~~~~~~ 151 (660)
+|-=||-||..+|. +|.-.|+.++.++-||+.++.-...-+.+|..+++ -++..-+. |. -....+|
T Consensus 279 ekeMLeeQLq~lrarse~~tleseiiqlkqkl~dm~~erdtdr~kteeL~eEnstLq~q~eqL~~~~ellq~~se~~E~e 358 (1195)
T KOG4643|consen 279 EKEMLEEQLQKLRARSEGATLESEIIQLKQKLDDMRSERDTDRHKTEELHEENSTLQVQKEQLDGQMELLQIFSENEELE 358 (1195)
T ss_pred HHHHHHHHHHHHHhccccCChHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHhhhhhhHhhhhhcchhhh
Confidence 45556667776664 45667788888888888887777666666666552 22211100 00 0000111
Q ss_pred HHhhhhhhhhhhhhhhHH-----------HHHHhhHHHHHHHH------HHHHHHHHHHhhhhchHHHHHHHHHHHhhhh
Q 006114 152 ISLKNSKQQQLDNSSYQK-----------VLADTTQMYEKKIT------ELIKQLEIEHARSEGAEEQVDTMKKLISDNQ 214 (660)
Q Consensus 152 ~~~~~~~~~~~~~~~~~~-----------~~~~~~~~~~~~~~------~l~~~l~~e~~~~~~~~~~~~~l~~~l~~~~ 214 (660)
-+=-+..+-||.+.--++ +=.--...||..|+ ...|.|+.++ ..|++.++.+.+++.+++
T Consensus 359 n~Sl~~e~eqLts~ralkllLEnrrlt~tleelqsss~Ee~~SK~leleke~KnLs~k~---e~Leeri~ql~qq~~ele 435 (1195)
T KOG4643|consen 359 NESLQVENEQLTSDRALKLLLENRRLTGTLEELQSSSYEELISKHLELEKEHKNLSKKH---EILEERINQLLQQLAELE 435 (1195)
T ss_pred hhhHHHHHHHhhhHHHHHHHHHhHHHHHHHHHHhhhhHHHHHHHHHHHHHHhHhHhHHH---HHHHHHHHHHHHHHHHHH
Confidence 111122222222211111 00111123333322 2223344443 568899999999999988
Q ss_pred hhHHHHhhhhhHHHHHHhhHHHHHHHHHHHHhhhhhhhhhhhhhhHHhHHHHHHHhhhhhccccchhH----HHHHHHHH
Q 006114 215 KSIEQYEMENSTYQKALADTTQLYEKKIAELNKKLEDEHACFEGAVEQLDMVKKLLSDYQNSNQGQKE----VHELCVKL 290 (660)
Q Consensus 215 ~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e----~~~Lk~~L 290 (660)
.-++-...|+..++++..-.+..|... ++.-.+.+ +++|++-+......| +..+.+.|
T Consensus 436 d~~K~L~~E~ekl~~e~~t~~~s~~rq-----~~e~e~~~-------------q~ls~~~Q~~~et~el~~~iknlnk~L 497 (1195)
T KOG4643|consen 436 DLEKKLQFELEKLLEETSTVTRSLSRQ-----SLENEELD-------------QLLSLQDQLEAETEELLNQIKNLNKSL 497 (1195)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhHHHH-----HHHhHHHH-------------HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 888888888887777776666666554 11111111 222222222222221 23455566
Q ss_pred HHHHHHHHhHHHHHHHHHHHHHHHHHhhhhccHHHHHHHHHHHHHHHHhhhhHHHHHHHHhhCCCC
Q 006114 291 KETRQLHESAVYEVQTLKSEYKNLLEEKETMSDELQAARQRLLVEEKQRKAIEYELVKLKKTAPEH 356 (660)
Q Consensus 291 e~e~~~~e~~e~E~~~lks~l~~l~~~~~~~~eel~~~~k~l~~e~~~rkkLe~E~~~l~~~l~~~ 356 (660)
++-.....++......++.|++..... .+....--..|...+ ..+++|.++++.++..+
T Consensus 498 ~~r~~elsrl~a~~~elkeQ~kt~~~q----ye~~~~k~eeLe~~l---~~lE~ENa~LlkqI~~L 556 (1195)
T KOG4643|consen 498 NNRDLELSRLHALKNELKEQYKTCDIQ----YELLSNKLEELEELL---GNLEEENAHLLKQIQSL 556 (1195)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHH---hhHHHHHHHHHHHHHHH
Confidence 666666666555555555555432221 112222222233333 56666666666655443
No 174
>PRK11637 AmiB activator; Provisional
Probab=95.77 E-value=2.7 Score=47.16 Aligned_cols=47 Identities=6% Similarity=0.101 Sum_probs=22.8
Q ss_pred HHHhhhhHHHHHHHHHhhhhhhhhhhhhHHHHHHHHHHHhhhhhhhh
Q 006114 115 LEKENAHLELEVEKILGELNHQKDQNNLKREKIVQLEISLKNSKQQQ 161 (660)
Q Consensus 115 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 161 (660)
+.++...+..+++.+.+.++......+....++..++-++....+.-
T Consensus 45 ~~~~l~~l~~qi~~~~~~i~~~~~~~~~~~~~l~~l~~qi~~~~~~i 91 (428)
T PRK11637 45 NRDQLKSIQQDIAAKEKSVRQQQQQRASLLAQLKKQEEAISQASRKL 91 (428)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44445555555555555555444444444445555544444443333
No 175
>KOG2259 consensus Uncharacterized conserved protein [Function unknown]
Probab=95.76 E-value=0.05 Score=62.33 Aligned_cols=214 Identities=14% Similarity=0.130 Sum_probs=133.4
Q ss_pred HHHhhCCCCHHHHHHHHHHHHHhhCCchhHHHHHHcCCHHHHHHHHccCCCHHHHHHHHHHHHHhhcC---ch---hHHH
Q 006114 412 ILQLLTSEDPDVQIHAVKVVANLAAEDINQEKIVEEGGLDALLLLLRTSQNTTILRVASGAIANLAMN---EM---NQGL 485 (660)
Q Consensus 412 LV~LL~s~d~~vr~~Aa~aL~nLa~~~en~~~Ive~GgI~~Lv~LL~~s~d~~v~~~Aa~AL~nLA~~---~~---n~~~ 485 (660)
|+.+..+.|..||.+|+..|..|...-..-.. .....+.++. +.+..|+..|..+++-.+.- |. +-+.
T Consensus 203 l~~~~~~~D~~Vrt~A~eglL~L~eg~kL~~~-----~Y~~A~~~ls-D~~e~VR~aAvqlv~v~gn~~p~~~e~e~~e~ 276 (823)
T KOG2259|consen 203 LIYLEHDQDFRVRTHAVEGLLALSEGFKLSKA-----CYSRAVKHLS-DDYEDVRKAAVQLVSVWGNRCPAPLERESEEE 276 (823)
T ss_pred HHHHhcCCCcchHHHHHHHHHhhcccccccHH-----HHHHHHHHhc-chHHHHHHHHHHHHHHHHhcCCCcccchhhhh
Confidence 67777888899999999888777652111111 2445667776 66778888887666544322 11 1111
Q ss_pred HHhcCccHHHHHhhcCCCCHHHHHHHHHHHHHHh-cChh-----------------------------------------
Q 006114 486 IMSRGGGQLLAKTASKTDDPQTLRMVAGALANLC-GNEK----------------------------------------- 523 (660)
Q Consensus 486 Ive~g~I~~Ll~LL~~s~d~~v~~~Aa~aLanLa-~~~~----------------------------------------- 523 (660)
=....++..++..+.+ ..-.|+..|+.+|+.+- .+.+
T Consensus 277 kl~D~aF~~vC~~v~D-~sl~VRV~AaK~lG~~~~vSee~i~QTLdKKlms~lRRkr~ahkrpk~l~s~GewSsGk~~~a 355 (823)
T KOG2259|consen 277 KLKDAAFSSVCRAVRD-RSLSVRVEAAKALGEFEQVSEEIIQQTLDKKLMSRLRRKRTAHKRPKALYSSGEWSSGKEWNA 355 (823)
T ss_pred hhHHHHHHHHHHHHhc-CceeeeehHHHHhchHHHhHHHHHHHHHHHHHhhhhhhhhhcccchHHHHhcCCcccCccccc
Confidence 1123356666666654 44566666666655443 1111
Q ss_pred ---------HHHHHHhccHHHHHHHHhcCCCHHHHHHHHHHHHHhhccchhhhhhcchhhhHHHhhcChHHHHHHhhcCC
Q 006114 524 ---------LHTMLEEDGAIKALLAMVRSGNIDVIAQVARGLANFAKCESRAIVQGQRKGRSHLMEDSALEWLIANSKTN 594 (660)
Q Consensus 524 ---------~r~~iv~~G~V~~Lv~lL~s~~~~v~~~Al~aLanLA~~~~~~~aq~~~e~r~~Li~~G~v~~Lv~lL~s~ 594 (660)
....|+..|+-.+++.-+...--+|+.+|+..++.||...|.- ...++..|+..+++.
T Consensus 356 dvpsee~d~~~~siI~sGACGA~VhGlEDEf~EVR~AAV~Sl~~La~ssP~F-------------A~~aldfLvDMfNDE 422 (823)
T KOG2259|consen 356 DVPSEEDDEEEESIIPSGACGALVHGLEDEFYEVRRAAVASLCSLATSSPGF-------------AVRALDFLVDMFNDE 422 (823)
T ss_pred cCchhhccccccccccccccceeeeechHHHHHHHHHHHHHHHHHHcCCCCc-------------HHHHHHHHHHHhccH
Confidence 1112233334444555555555689999999999999655421 134688899999999
Q ss_pred CHHHHHHHHHHHHHhhcCCccHHHHHhcCcHHHHHHHHhcCChHHHHHHHHHHHhcC
Q 006114 595 SASTRRHVELALCHLAQNEDNARDFISRGGAKELVQISIESSREDIRNLAKKTMKSN 651 (660)
Q Consensus 595 d~~vr~~Aa~AL~nLa~~~e~~~~Ive~G~l~~Lv~lL~s~s~~~ir~~A~~~L~~~ 651 (660)
...||..|..+|..++.+-. +...-++.++..+.+ ...++|...+.+|++.
T Consensus 423 ~~~VRL~ai~aL~~Is~~l~-----i~eeql~~il~~L~D-~s~dvRe~l~elL~~~ 473 (823)
T KOG2259|consen 423 IEVVRLKAIFALTMISVHLA-----IREEQLRQILESLED-RSVDVREALRELLKNA 473 (823)
T ss_pred HHHHHHHHHHHHHHHHHHhe-----ecHHHHHHHHHHHHh-cCHHHHHHHHHHHHhc
Confidence 99999999999999987732 344456667777764 4456777777777543
No 176
>PRK04863 mukB cell division protein MukB; Provisional
Probab=95.75 E-value=9.9 Score=49.18 Aligned_cols=187 Identities=14% Similarity=0.143 Sum_probs=85.9
Q ss_pred HhhHHHHHHHHHHHHHHHHHhhh---------hchHHHHHHHHHHH---hhHHHHHHhhhhhhhHHHHhhhhHHHHHHHH
Q 006114 62 KDNLVTQVELLTAKIEMQQKLRE---------NDKYEFEKQLRESQ---ISYDESMRNLVTRSEFLEKENAHLELEVEKI 129 (660)
Q Consensus 62 ~~~~~~~~~~~~~~~~~~~~~~~---------~~~~~~e~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 129 (660)
...+..++.+|..+.+.-.+..+ .+...+...+.+++ .++.+.+..+..+.+.+..+...++.+++.+
T Consensus 316 L~ELe~rL~kLEkQaEkA~kyleL~ee~lr~q~ei~~l~~~LeELee~Lee~eeeLeeleeeleeleeEleelEeeLeeL 395 (1486)
T PRK04863 316 LAELNEAESDLEQDYQAASDHLNLVQTALRQQEKIERYQADLEELEERLEEQNEVVEEADEQQEENEARAEAAEEEVDEL 395 (1486)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34455566666555554443322 22222333333322 3344444555555556666666666666666
Q ss_pred HhhhhhhhhhhhhHHHHHHHHHHHhhhhh--hhhhh-hhhhHHHHHHhhHHHHHHHHHHHHHHHHHHhhhhchHHHHHHH
Q 006114 130 LGELNHQKDQNNLKREKIVQLEISLKNSK--QQQLD-NSSYQKVLADTTQMYEKKITELIKQLEIEHARSEGAEEQVDTM 206 (660)
Q Consensus 130 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~-~~~~~~~~~~~~~~~~~~~~~l~~~l~~e~~~~~~~~~~~~~l 206 (660)
...++...........++.+++..+.... +.+.. ...-...|.+....+..+++++..++.+-......++.....+
T Consensus 396 qeqLaelqqel~elQ~el~q~qq~i~~Le~~~~~~~~~~~SdEeLe~~LenF~aklee~e~qL~elE~kL~~lea~leql 475 (1486)
T PRK04863 396 KSQLADYQQALDVQQTRAIQYQQAVQALERAKQLCGLPDLTADNAEDWLEEFQAKEQEATEELLSLEQKLSVAQAAHSQF 475 (1486)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 66665444444444444444433332111 11111 1111224555555555555555555555444444444444444
Q ss_pred HHHHhhhhhhHHHHhhhhh-------------HHHHHHhhHHHHHHHHHHHHhhhhh
Q 006114 207 KKLISDNQKSIEQYEMENS-------------TYQKALADTTQLYEKKIAELNKKLE 250 (660)
Q Consensus 207 ~~~l~~~~~~~~~~~~~~~-------------~~~~~l~~~~~~~~~~~~~~~~~~~ 250 (660)
.+..+.......+ ...+ ..++.+++..+....+.++|...++
T Consensus 476 ~~~~~~l~~~~Gk--v~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~ 530 (1486)
T PRK04863 476 EQAYQLVRKIAGE--VSRSEAWDVARELLRRLREQRHLAEQLQQLRMRLSELEQRLR 530 (1486)
T ss_pred HHHHHHHHHHcCC--cCHHHHHHHHHHHHHHhHHHHHHHHhhHHHHHHHHHHHHHHH
Confidence 4444443321111 1111 2234555555556666666666555
No 177
>KOG1943 consensus Beta-tubulin folding cofactor D [Posttranslational modification, protein turnover, chaperones]
Probab=95.72 E-value=0.45 Score=57.52 Aligned_cols=225 Identities=12% Similarity=0.071 Sum_probs=135.0
Q ss_pred CCHHHHHHhhCCCCHHHHHHHHHHHHHhhCCchhHHHHHHcCCHHHHHHHHccCCCHHHHHHHHHHHHHhhcCchhHHHH
Q 006114 407 VGLPKILQLLTSEDPDVQIHAVKVVANLAAEDINQEKIVEEGGLDALLLLLRTSQNTTILRVASGAIANLAMNEMNQGLI 486 (660)
Q Consensus 407 ggI~~LV~LL~s~d~~vr~~Aa~aL~nLa~~~en~~~Ive~GgI~~Lv~LL~~s~d~~v~~~Aa~AL~nLA~~~~n~~~I 486 (660)
+.+..|+..|++.|..||-.||+-++.++...+ ...++ ..|...+.++....++..--.||.+|+.||.---.-...
T Consensus 341 ~vie~Lls~l~d~dt~VrWSaAKg~grvt~rlp--~~Lad-~vi~svid~~~p~e~~~aWHgacLaLAELA~rGlLlps~ 417 (1133)
T KOG1943|consen 341 FVIEHLLSALSDTDTVVRWSAAKGLGRVTSRLP--PELAD-QVIGSVIDLFNPAEDDSAWHGACLALAELALRGLLLPSL 417 (1133)
T ss_pred HHHHHHHHhccCCcchhhHHHHHHHHHHHccCc--HHHHH-HHHHHHHHhcCcCCchhHHHHHHHHHHHHHhcCCcchHH
Confidence 567778888889999999999999999998432 11222 246666666664455666667999999988641100000
Q ss_pred HhcCccHHHHHhhcC-------CCCHHHHHHHHHHHHHHh--cChhHHHHHHhccHHHHHHHHhcCCCHHHHHHHHHHHH
Q 006114 487 MSRGGGQLLAKTASK-------TDDPQTLRMVAGALANLC--GNEKLHTMLEEDGAIKALLAMVRSGNIDVIAQVARGLA 557 (660)
Q Consensus 487 ve~g~I~~Ll~LL~~-------s~d~~v~~~Aa~aLanLa--~~~~~r~~iv~~G~V~~Lv~lL~s~~~~v~~~Al~aLa 557 (660)
+ .+++|.++.-|.. +....|+.+||.++|.++ .+|..-..++..=.-..|+..+..+...++..|.+|+.
T Consensus 418 l-~dVvplI~kaL~Yd~~~G~~s~G~~VRDaAcY~~WAf~Rays~~~l~p~l~~L~s~LL~~AlFDrevncRRAAsAAlq 496 (1133)
T KOG1943|consen 418 L-EDVVPLILKALHYDVRRGQHSVGQHVRDAACYVCWAFARAYSPSDLKPVLQSLASALLIVALFDREVNCRRAASAALQ 496 (1133)
T ss_pred H-HHHHHHHHHHhhhhhhhcccccccchHHHHHHHHHHHHhcCChhhhhHHHHHHHHHHHHHHhcCchhhHhHHHHHHHH
Confidence 0 1245555554421 223468889998888887 33432232333222334445566777888999998887
Q ss_pred Hhhccchh---hh---------hhcc-----hhhhHHHhh-cChHHHHHHh-----hcCCCHHHHHHHHHHHHHhhcCCc
Q 006114 558 NFAKCESR---AI---------VQGQ-----RKGRSHLME-DSALEWLIAN-----SKTNSASTRRHVELALCHLAQNED 614 (660)
Q Consensus 558 nLA~~~~~---~~---------aq~~-----~e~r~~Li~-~G~v~~Lv~l-----L~s~d~~vr~~Aa~AL~nLa~~~e 614 (660)
......+. .+ +.+. ......+.. .|...++++. +.+-|..+|..++++|..|+...
T Consensus 497 E~VGR~~n~p~Gi~Lis~~dy~sV~~rsNcy~~l~~~ia~~~~y~~~~f~~L~t~Kv~HWd~~irelaa~aL~~Ls~~~- 575 (1133)
T KOG1943|consen 497 ENVGRQGNFPHGISLISTIDYFSVTNRSNCYLDLCVSIAEFSGYREPVFNHLLTKKVCHWDVKIRELAAYALHKLSLTE- 575 (1133)
T ss_pred HHhccCCCCCCchhhhhhcchhhhhhhhhHHHHHhHHHHhhhhHHHHHHHHHHhcccccccHHHHHHHHHHHHHHHHhh-
Confidence 55533111 00 0000 111122222 4444454443 44568999999999999988754
Q ss_pred cHHHHHhcCcHHHHHHHHhcCChH
Q 006114 615 NARDFISRGGAKELVQISIESSRE 638 (660)
Q Consensus 615 ~~~~Ive~G~l~~Lv~lL~s~s~~ 638 (660)
......+.+++|+....+.+..
T Consensus 576 --pk~~a~~~L~~lld~~ls~~~~ 597 (1133)
T KOG1943|consen 576 --PKYLADYVLPPLLDSTLSKDAS 597 (1133)
T ss_pred --HHhhcccchhhhhhhhcCCChH
Confidence 2335567778887777666544
No 178
>PRK01156 chromosome segregation protein; Provisional
Probab=95.72 E-value=7.6 Score=47.69 Aligned_cols=16 Identities=25% Similarity=0.424 Sum_probs=6.3
Q ss_pred HHHhhHHHHHHHHHHH
Q 006114 60 EAKDNLVTQVELLTAK 75 (660)
Q Consensus 60 ~~~~~~~~~~~~~~~~ 75 (660)
.+..++...+..+.++
T Consensus 166 ~~~~~~~~~~~~~~~e 181 (895)
T PRK01156 166 RNYDKLKDVIDMLRAE 181 (895)
T ss_pred HHHHHHHHHHHHHHHH
Confidence 3333344444444333
No 179
>PF11841 DUF3361: Domain of unknown function (DUF3361)
Probab=95.68 E-value=0.2 Score=48.58 Aligned_cols=120 Identities=14% Similarity=0.185 Sum_probs=89.6
Q ss_pred HHHHHHcCCHHHHHHHHccCCC-----HHHHHHHHHHHHHhhcCchhHHHHHhcCccHHHHHhhcCCC-CHHHHHHHHHH
Q 006114 441 QEKIVEEGGLDALLLLLRTSQN-----TTILRVASGAIANLAMNEMNQGLIMSRGGGQLLAKTASKTD-DPQTLRMVAGA 514 (660)
Q Consensus 441 ~~~Ive~GgI~~Lv~LL~~s~d-----~~v~~~Aa~AL~nLA~~~~n~~~Ive~g~I~~Ll~LL~~s~-d~~v~~~Aa~a 514 (660)
...++..||++.|+.++.++.. .++..++..|+..|..+....=..+....|..++.....+. |+.+...|...
T Consensus 4 A~EFI~~~Gl~~L~~~iE~g~~~~~~~~~~La~~L~af~eLMeHg~vsWd~l~~~FI~Kia~~Vn~~~~d~~i~q~sLaI 83 (160)
T PF11841_consen 4 AQEFISRDGLTLLIKMIEEGTEIQPCKGEILAYALTAFVELMEHGIVSWDTLSDSFIKKIASYVNSSAMDASILQRSLAI 83 (160)
T ss_pred HHHHHhccCHHHHHHHHHcCCccCcchHHHHHHHHHHHHHHHhcCcCchhhccHHHHHHHHHHHccccccchHHHHHHHH
Confidence 4678889999999999987663 47778888888888766332223445556666666665443 78899999999
Q ss_pred HHHHhcChhH-HHHHHhccHHHHHHHHhcCCCHHHHHHHHHHHHHhh
Q 006114 515 LANLCGNEKL-HTMLEEDGAIKALLAMVRSGNIDVIAQVARGLANFA 560 (660)
Q Consensus 515 LanLa~~~~~-r~~iv~~G~V~~Lv~lL~s~~~~v~~~Al~aLanLA 560 (660)
|-++..+... ...+.+.=-++.|+..+..++++++.+|+..|-.|-
T Consensus 84 LEs~Vl~S~~ly~~V~~evt~~~Li~hLq~~~~~iq~naiaLinAL~ 130 (160)
T PF11841_consen 84 LESIVLNSPKLYQLVEQEVTLESLIRHLQVSNQEIQTNAIALINALF 130 (160)
T ss_pred HHHHHhCCHHHHHHHhccCCHHHHHHHHHcCCHHHHHHHHHHHHHHH
Confidence 9999855544 555555556788999999999999999888876664
No 180
>PF11841 DUF3361: Domain of unknown function (DUF3361)
Probab=95.58 E-value=0.26 Score=47.83 Aligned_cols=118 Identities=10% Similarity=0.162 Sum_probs=91.0
Q ss_pred HHHHhCCCHHHHHHhhCCCC------HHHHHHHHHHHHHhhCCchhHHHHHHcCCHHHHHHHHccCC-CHHHHHHHHHHH
Q 006114 401 AKICDEVGLPKILQLLTSED------PDVQIHAVKVVANLAAEDINQEKIVEEGGLDALLLLLRTSQ-NTTILRVASGAI 473 (660)
Q Consensus 401 ~~I~e~ggI~~LV~LL~s~d------~~vr~~Aa~aL~nLa~~~en~~~Ive~GgI~~Lv~LL~~s~-d~~v~~~Aa~AL 473 (660)
..++..+|++.|+.++.++. ......++.++..|..+...-........|..++..++... |+.+...|...|
T Consensus 5 ~EFI~~~Gl~~L~~~iE~g~~~~~~~~~~La~~L~af~eLMeHg~vsWd~l~~~FI~Kia~~Vn~~~~d~~i~q~sLaIL 84 (160)
T PF11841_consen 5 QEFISRDGLTLLIKMIEEGTEIQPCKGEILAYALTAFVELMEHGIVSWDTLSDSFIKKIASYVNSSAMDASILQRSLAIL 84 (160)
T ss_pred HHHHhccCHHHHHHHHHcCCccCcchHHHHHHHHHHHHHHHhcCcCchhhccHHHHHHHHHHHccccccchHHHHHHHHH
Confidence 35778899999999998654 47778888888888876555555666667778888887554 788999999999
Q ss_pred HHhhcCchh-HHHHHhcCccHHHHHhhcCCCCHHHHHHHHHHHHHHh
Q 006114 474 ANLAMNEMN-QGLIMSRGGGQLLAKTASKTDDPQTLRMVAGALANLC 519 (660)
Q Consensus 474 ~nLA~~~~n-~~~Ive~g~I~~Ll~LL~~s~d~~v~~~Aa~aLanLa 519 (660)
-++..+... ...+...=.++.|+..|.. .+++++.+|...|-.|-
T Consensus 85 Es~Vl~S~~ly~~V~~evt~~~Li~hLq~-~~~~iq~naiaLinAL~ 130 (160)
T PF11841_consen 85 ESIVLNSPKLYQLVEQEVTLESLIRHLQV-SNQEIQTNAIALINALF 130 (160)
T ss_pred HHHHhCCHHHHHHHhccCCHHHHHHHHHc-CCHHHHHHHHHHHHHHH
Confidence 999988555 4445455568889999976 78899988887776664
No 181
>PF08569 Mo25: Mo25-like; InterPro: IPR013878 Mo25-like proteins are involved in both polarised growth and cytokinesis. In fission yeast Mo25 is localised alternately to the spindle pole body and to the site of cell division in a cell cycle dependent manner [, ]. ; PDB: 2WTK_A 1UPK_A 3GNI_A 1UPL_A.
Probab=95.56 E-value=1.2 Score=48.47 Aligned_cols=199 Identities=14% Similarity=0.123 Sum_probs=140.5
Q ss_pred HHHHHcCCHHHHHHHHccCCCHHHHHHHHHHHHHhhcC-chh-----HHHHHhc--CccHHHHHhhcCCCCHHHHHHHHH
Q 006114 442 EKIVEEGGLDALLLLLRTSQNTTILRVASGAIANLAMN-EMN-----QGLIMSR--GGGQLLAKTASKTDDPQTLRMVAG 513 (660)
Q Consensus 442 ~~Ive~GgI~~Lv~LL~~s~d~~v~~~Aa~AL~nLA~~-~~n-----~~~Ive~--g~I~~Ll~LL~~s~d~~v~~~Aa~ 513 (660)
..+...|.++.|+..|. .-+-+.+..++.+..++... ... ...+... .++..|+. ..++|++...+..
T Consensus 70 ~Ei~~~dll~~Li~~L~-~L~fEsrKdv~~if~~llr~~~~~~~~p~v~yl~~~~peil~~L~~---gy~~~dial~~g~ 145 (335)
T PF08569_consen 70 QEIYRSDLLYLLIRNLP-KLDFESRKDVAQIFSNLLRRQIGSRSPPTVDYLERHRPEILDILLR---GYENPDIALNCGD 145 (335)
T ss_dssp HHHHHHTHHHHHHHTGG-GS-HHHHHHHHHHHHHHHT--BTTB--HHHHHHHT--THHHHHHHH---GGGSTTTHHHHHH
T ss_pred HHHHHhCHHHHHHHHhh-hCCCcccccHHHHHHHHHhhccCCCCCchHHHHHhCCHHHHHHHHH---HhcCccccchHHH
Confidence 45666778889999886 66888899999999988765 222 3334432 33444444 3456778778888
Q ss_pred HHHHHhcChhHHHHHHhccHHHHHHHHhcCCCHHHHHHHHHHHHHhhccchhhhhhcchhhhHHHhh---cChHHHHHHh
Q 006114 514 ALANLCGNEKLHTMLEEDGAIKALLAMVRSGNIDVIAQVARGLANFAKCESRAIVQGQRKGRSHLME---DSALEWLIAN 590 (660)
Q Consensus 514 aLanLa~~~~~r~~iv~~G~V~~Lv~lL~s~~~~v~~~Al~aLanLA~~~~~~~aq~~~e~r~~Li~---~G~v~~Lv~l 590 (660)
.|+.++.++.....+.....+..+...+..++-++..-|..++..+-..+.... ..++. ...+.....+
T Consensus 146 mlRec~k~e~l~~~iL~~~~f~~ff~~~~~~~Fdiasdaf~t~~~llt~hk~~~--------a~fl~~n~d~ff~~~~~L 217 (335)
T PF08569_consen 146 MLRECIKHESLAKIILYSECFWKFFKYVQLPNFDIASDAFSTFKELLTRHKKLV--------AEFLSNNYDRFFQKYNKL 217 (335)
T ss_dssp HHHHHTTSHHHHHHHHTSGGGGGHHHHTTSSSHHHHHHHHHHHHHHHHSSHHHH--------HHHHHHTHHHHHHHHHHH
T ss_pred HHHHHHhhHHHHHHHhCcHHHHHHHHHhcCCccHhHHHHHHHHHHHHhccHHHH--------HHHHHHHHHHHHHHHHHH
Confidence 899999999999999999999999999999999999999999988655543222 22333 3466788889
Q ss_pred hcCCCHHHHHHHHHHHHHhhcCCccHHHHH----hcCcHHHHHHHHhcCChHHHHHHHH---HHHhcCcc
Q 006114 591 SKTNSASTRRHVELALCHLAQNEDNARDFI----SRGGAKELVQISIESSREDIRNLAK---KTMKSNPR 653 (660)
Q Consensus 591 L~s~d~~vr~~Aa~AL~nLa~~~e~~~~Iv----e~G~l~~Lv~lL~s~s~~~ir~~A~---~~L~~~p~ 653 (660)
+.+++--+++.+...|+.|-.+..+...|. +..-+..++.++++.+ ..++--|- ++.-.||.
T Consensus 218 l~s~NYvtkrqslkLL~ellldr~n~~vm~~yi~~~~nLkl~M~lL~d~s-k~Iq~eAFhvFKvFVANp~ 286 (335)
T PF08569_consen 218 LESSNYVTKRQSLKLLGELLLDRSNFNVMTRYISSPENLKLMMNLLRDKS-KNIQFEAFHVFKVFVANPN 286 (335)
T ss_dssp CT-SSHHHHHHHHHHHHHHHHSGGGHHHHHHHTT-HHHHHHHHHHTT-S--HHHHHHHHHHHHHHHH-SS
T ss_pred ccCCCeEeehhhHHHHHHHHHchhHHHHHHHHHCCHHHHHHHHHHhcCcc-hhhhHHHHHHHHHHHhCCC
Confidence 999999999999999999998887765554 3455667777777654 44555555 44445553
No 182
>COG5096 Vesicle coat complex, various subunits [Intracellular trafficking and secretion]
Probab=95.55 E-value=0.6 Score=55.42 Aligned_cols=135 Identities=16% Similarity=0.143 Sum_probs=82.5
Q ss_pred HHHhhCCCCHHHHHHHHHHHHHhhCCchhHHHHHHcCCHHHHHHHHccCCCHHHHHHHHHHHHHhhcCchhHHHHHhcCc
Q 006114 412 ILQLLTSEDPDVQIHAVKVVANLAAEDINQEKIVEEGGLDALLLLLRTSQNTTILRVASGAIANLAMNEMNQGLIMSRGG 491 (660)
Q Consensus 412 LV~LL~s~d~~vr~~Aa~aL~nLa~~~en~~~Ive~GgI~~Lv~LL~~s~d~~v~~~Aa~AL~nLA~~~~n~~~Ive~g~ 491 (660)
++..+.+.|.++++-.---|..++........+ ++..+..=|. ++|+.+|..|.+++..|=. ++ +-..+
T Consensus 60 ViK~~~trd~ElKrL~ylYl~~yak~~P~~~lL----avNti~kDl~-d~N~~iR~~AlR~ls~l~~-~e-----l~~~~ 128 (757)
T COG5096 60 VIKNVATRDVELKRLLYLYLERYAKLKPELALL----AVNTIQKDLQ-DPNEEIRGFALRTLSLLRV-KE-----LLGNI 128 (757)
T ss_pred HHHHHHhcCHHHHHHHHHHHHHHhccCHHHHHH----HHHHHHhhcc-CCCHHHHHHHHHHHHhcCh-HH-----HHHHH
Confidence 344444666677766666666666622211111 2555666665 6777787777777776511 11 11224
Q ss_pred cHHHHHhhcCCCCHHHHHHHHHHHHHHhcChhHHHHHHhccHHHHHHHHhcCCCHHHHHHHHHHHHHhh
Q 006114 492 GQLLAKTASKTDDPQTLRMVAGALANLCGNEKLHTMLEEDGAIKALLAMVRSGNIDVIAQVARGLANFA 560 (660)
Q Consensus 492 I~~Ll~LL~~s~d~~v~~~Aa~aLanLa~~~~~r~~iv~~G~V~~Lv~lL~s~~~~v~~~Al~aLanLA 560 (660)
++++..++.+ +++.|++.|+-||+.+-.-+ .....+.|.+..+..++..++|.|..+|+.++..+.
T Consensus 129 ~~~ik~~l~d-~~ayVRk~Aalav~kly~ld--~~l~~~~g~~~~l~~l~~D~dP~Vi~nAl~sl~~i~ 194 (757)
T COG5096 129 IDPIKKLLTD-PHAYVRKTAALAVAKLYRLD--KDLYHELGLIDILKELVADSDPIVIANALASLAEID 194 (757)
T ss_pred HHHHHHHccC-CcHHHHHHHHHHHHHHHhcC--HhhhhcccHHHHHHHHhhCCCchHHHHHHHHHHHhc
Confidence 6677777754 67778888877777775211 234556677777777777788888887777776655
No 183
>COG5096 Vesicle coat complex, various subunits [Intracellular trafficking and secretion]
Probab=95.55 E-value=0.24 Score=58.69 Aligned_cols=142 Identities=16% Similarity=0.254 Sum_probs=97.2
Q ss_pred chhhhhhccc--CCCccccccchhhhhhcCchhHHHHH-------hCC-------CHHHHHHhhCCCCHHHHHHHHHHHH
Q 006114 369 DYISKGSSRF--GAPMSLQKSNPSRELSGQRATIAKIC-------DEV-------GLPKILQLLTSEDPDVQIHAVKVVA 432 (660)
Q Consensus 369 g~i~~l~~~L--~~~~~~vr~~~~~~laa~~~~~~~I~-------e~g-------gI~~LV~LL~s~d~~vr~~Aa~aL~ 432 (660)
.++.++++.+ |..++.+-..-.+..+..+....+++ ..+ ++..+..=+.++++.+|..|+++++
T Consensus 38 dAmK~iIa~M~~G~dmssLf~dViK~~~trd~ElKrL~ylYl~~yak~~P~~~lLavNti~kDl~d~N~~iR~~AlR~ls 117 (757)
T COG5096 38 DAMKKIIAQMSLGEDMSSLFPDVIKNVATRDVELKRLLYLYLERYAKLKPELALLAVNTIQKDLQDPNEEIRGFALRTLS 117 (757)
T ss_pred HHHHHHHHHHhcCCChHHHHHHHHHHHHhcCHHHHHHHHHHHHHHhccCHHHHHHHHHHHHhhccCCCHHHHHHHHHHHH
Confidence 3445555533 34455555555555455555555532 111 1333444445889999999999986
Q ss_pred HhhCCchhHHHHHHcCCHHHHHHHHccCCCHHHHHHHHHHHHHhhcCchhHHHHHhcCccHHHHHhhcCCCCHHHHHHHH
Q 006114 433 NLAAEDINQEKIVEEGGLDALLLLLRTSQNTTILRVASGAIANLAMNEMNQGLIMSRGGGQLLAKTASKTDDPQTLRMVA 512 (660)
Q Consensus 433 nLa~~~en~~~Ive~GgI~~Lv~LL~~s~d~~v~~~Aa~AL~nLA~~~~n~~~Ive~g~I~~Ll~LL~~s~d~~v~~~Aa 512 (660)
.+-.. .+... .++++..++. ++++.||+.|+-|++.| ..-....+.+.|.+..+..++.+ .||.|.++|.
T Consensus 118 ~l~~~-----el~~~-~~~~ik~~l~-d~~ayVRk~Aalav~kl--y~ld~~l~~~~g~~~~l~~l~~D-~dP~Vi~nAl 187 (757)
T COG5096 118 LLRVK-----ELLGN-IIDPIKKLLT-DPHAYVRKTAALAVAKL--YRLDKDLYHELGLIDILKELVAD-SDPIVIANAL 187 (757)
T ss_pred hcChH-----HHHHH-HHHHHHHHcc-CCcHHHHHHHHHHHHHH--HhcCHhhhhcccHHHHHHHHhhC-CCchHHHHHH
Confidence 55322 12221 5888999997 89999999999999998 44456777888899999998875 8999999999
Q ss_pred HHHHHHhc
Q 006114 513 GALANLCG 520 (660)
Q Consensus 513 ~aLanLa~ 520 (660)
.+|..+..
T Consensus 188 ~sl~~i~~ 195 (757)
T COG5096 188 ASLAEIDP 195 (757)
T ss_pred HHHHHhch
Confidence 99988764
No 184
>PF08569 Mo25: Mo25-like; InterPro: IPR013878 Mo25-like proteins are involved in both polarised growth and cytokinesis. In fission yeast Mo25 is localised alternately to the spindle pole body and to the site of cell division in a cell cycle dependent manner [, ]. ; PDB: 2WTK_A 1UPK_A 3GNI_A 1UPL_A.
Probab=95.55 E-value=1.3 Score=48.11 Aligned_cols=225 Identities=12% Similarity=0.069 Sum_probs=155.5
Q ss_pred HHHhCCCHHHHHHhhCCCCHHHHHHHHHHHHHhhC-CchhH-----HHHHHcCCHHHHHHHHccCCCHHHHHHHHHHHHH
Q 006114 402 KICDEVGLPKILQLLTSEDPDVQIHAVKVVANLAA-EDINQ-----EKIVEEGGLDALLLLLRTSQNTTILRVASGAIAN 475 (660)
Q Consensus 402 ~I~e~ggI~~LV~LL~s~d~~vr~~Aa~aL~nLa~-~~en~-----~~Ive~GgI~~Lv~LL~~s~d~~v~~~Aa~AL~n 475 (660)
.+...+.++.|+..|..-+-+.|..++.+..++.. ...++ ..+... .-..|..++....++++.-.+...|+.
T Consensus 71 Ei~~~dll~~Li~~L~~L~fEsrKdv~~if~~llr~~~~~~~~p~v~yl~~~-~peil~~L~~gy~~~dial~~g~mlRe 149 (335)
T PF08569_consen 71 EIYRSDLLYLLIRNLPKLDFESRKDVAQIFSNLLRRQIGSRSPPTVDYLERH-RPEILDILLRGYENPDIALNCGDMLRE 149 (335)
T ss_dssp HHHHHTHHHHHHHTGGGS-HHHHHHHHHHHHHHHT--BTTB--HHHHHHHT---THHHHHHHHGGGSTTTHHHHHHHHHH
T ss_pred HHHHhCHHHHHHHHhhhCCCcccccHHHHHHHHHhhccCCCCCchHHHHHhC-CHHHHHHHHHHhcCccccchHHHHHHH
Confidence 45666889999999999999999999999999877 33332 223222 122233334434577778888899999
Q ss_pred hhcCchhHHHHHhcCccHHHHHhhcCCCCHHHHHHHHHHHHHH-hcChhHHHHHHhc---cHHHHHHHHhcCCCHHHHHH
Q 006114 476 LAMNEMNQGLIMSRGGGQLLAKTASKTDDPQTLRMVAGALANL-CGNEKLHTMLEED---GAIKALLAMVRSGNIDVIAQ 551 (660)
Q Consensus 476 LA~~~~n~~~Ive~g~I~~Ll~LL~~s~d~~v~~~Aa~aLanL-a~~~~~r~~iv~~---G~V~~Lv~lL~s~~~~v~~~ 551 (660)
++.++.....|.....+..+..... .++-++...|..++..+ +.++.....+... ..+.....++.++|--++.+
T Consensus 150 c~k~e~l~~~iL~~~~f~~ff~~~~-~~~Fdiasdaf~t~~~llt~hk~~~a~fl~~n~d~ff~~~~~Ll~s~NYvtkrq 228 (335)
T PF08569_consen 150 CIKHESLAKIILYSECFWKFFKYVQ-LPNFDIASDAFSTFKELLTRHKKLVAEFLSNNYDRFFQKYNKLLESSNYVTKRQ 228 (335)
T ss_dssp HTTSHHHHHHHHTSGGGGGHHHHTT-SSSHHHHHHHHHHHHHHHHSSHHHHHHHHHHTHHHHHHHHHHHCT-SSHHHHHH
T ss_pred HHhhHHHHHHHhCcHHHHHHHHHhc-CCccHhHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHHccCCCeEeehh
Confidence 9999999999999888888888875 47889999998888875 4667666666654 45667778889999999999
Q ss_pred HHHHHHHhhccchhhhhhcchhhhHHHhhcChHHHHHHhhcCCCHHHHHHHHHHHHHhhcCCccHHHHHh---cCcHHHH
Q 006114 552 VARGLANFAKCESRAIVQGQRKGRSHLMEDSALEWLIANSKTNSASTRRHVELALCHLAQNEDNARDFIS---RGGAKEL 628 (660)
Q Consensus 552 Al~aLanLA~~~~~~~aq~~~e~r~~Li~~G~v~~Lv~lL~s~d~~vr~~Aa~AL~nLa~~~e~~~~Ive---~G~l~~L 628 (660)
++..|+.|-...+.. ......+-+..-+..++.+|.+.+..++-.|.-++--+..+|.....|.. .+- ..|
T Consensus 229 slkLL~ellldr~n~-----~vm~~yi~~~~nLkl~M~lL~d~sk~Iq~eAFhvFKvFVANp~K~~~I~~iL~~Nr-~kL 302 (335)
T PF08569_consen 229 SLKLLGELLLDRSNF-----NVMTRYISSPENLKLMMNLLRDKSKNIQFEAFHVFKVFVANPNKPPPIVDILIKNR-EKL 302 (335)
T ss_dssp HHHHHHHHHHSGGGH-----HHHHHHTT-HHHHHHHHHHTT-S-HHHHHHHHHHHHHHHH-SS-BHHHHHHHHHTH-HHH
T ss_pred hHHHHHHHHHchhHH-----HHHHHHHCCHHHHHHHHHHhcCcchhhhHHHHHHHHHHHhCCCCChHHHHHHHHHH-HHH
Confidence 999999997653321 12234455566788999999999999999998888777776643333322 211 455
Q ss_pred HHHHhc
Q 006114 629 VQISIE 634 (660)
Q Consensus 629 v~lL~s 634 (660)
+.++..
T Consensus 303 l~fl~~ 308 (335)
T PF08569_consen 303 LRFLKD 308 (335)
T ss_dssp HHHHHT
T ss_pred HHHHHh
Confidence 555554
No 185
>KOG1029 consensus Endocytic adaptor protein intersectin [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport]
Probab=95.54 E-value=5.4 Score=47.02 Aligned_cols=104 Identities=18% Similarity=0.263 Sum_probs=54.3
Q ss_pred HHHHHHHHHHHhhhhhhhhhhhhhhHHHHHHhhH---HHHHHHHHHHHHHHHHHhhhhchHHHHHHHHHHHhhhhhhHHH
Q 006114 143 KREKIVQLEISLKNSKQQQLDNSSYQKVLADTTQ---MYEKKITELIKQLEIEHARSEGAEEQVDTMKKLISDNQKSIEQ 219 (660)
Q Consensus 143 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~l~~~l~~e~~~~~~~~~~~~~l~~~l~~~~~~~~~ 219 (660)
+--+.+.|+-.||+.++-..+...|...|..... -.-+-|++-.-.|++|+... -.+.+-+.+++++++-
T Consensus 505 l~~Ekq~l~~qlkq~q~a~~~~~~~~s~L~aa~~~ke~irq~ikdqldelskE~esk---~~eidi~n~qlkelk~---- 577 (1118)
T KOG1029|consen 505 LAPEKQELNHQLKQKQSAHKETTQRKSELEAARRKKELIRQAIKDQLDELSKETESK---LNEIDIFNNQLKELKE---- 577 (1118)
T ss_pred hhhHHHHHHHHHHHhhhhccCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHhhhhHHHHHHHHHH----
Confidence 3445566777777777766666665543332222 22233333334444444322 2344455556666552
Q ss_pred HhhhhhHHHHHHhhHHHHHH----------HHHHHHhhhhhhhhhhhhhh
Q 006114 220 YEMENSTYQKALADTTQLYE----------KKIAELNKKLEDEHACFEGA 259 (660)
Q Consensus 220 ~~~~~~~~~~~l~~~~~~~~----------~~~~~~~~~~~~~~~~~~~~ 259 (660)
.-|.+.++ -.++|. .|+-||+++.+.|.++...+
T Consensus 578 -----~~~~q~la-ke~~yk~e~d~~ke~et~~lel~~~ke~e~~~asa~ 621 (1118)
T KOG1029|consen 578 -----DVNSQQLA-KEELYKNERDKLKEAETKALELIGEKEAESAPASAA 621 (1118)
T ss_pred -----HHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHhhhhhccchhhcc
Confidence 11112222 334443 78889998888887776665
No 186
>PF04078 Rcd1: Cell differentiation family, Rcd1-like ; InterPro: IPR007216 Rcd1 (Required cell differentiation 1) -like proteins are found among a wide range of organisms []. Rcd1 was initially identified as an essential factor in nitrogen starvation-invoked differentiation in fission yeast. This results largely from a defect in nitrogen starvation-invoked induction of ste11+, a key transcriptional factor gene required for the onset of sexual development. It is one of the most conserved proteins in eukaryotes, and its mammalian homologue is expressed in a variety of differentiating tissues [, ]. The mammalian Rcd1 is a novel transcriptional cofactor and is critical for retinoic acid-induced differentiation of F9 mouse teratocarcinoma cells, at least in part, via forming complexes with retinoic acid receptor and activation transcription factor-2 (ATF-2) []. Two of the members in this family have been characterised as being involved in regulation of Ste11 regulated sex genes [, ].; PDB: 2FV2_B.
Probab=95.52 E-value=1 Score=46.91 Aligned_cols=200 Identities=12% Similarity=0.024 Sum_probs=123.7
Q ss_pred CHHHHHHHHHHHHHhhC-CchhHHHHHH-cCCHHHHHHHHcc------CC--CH---HHHHHHHHHHHHhhcCchhHHHH
Q 006114 420 DPDVQIHAVKVVANLAA-EDINQEKIVE-EGGLDALLLLLRT------SQ--NT---TILRVASGAIANLAMNEMNQGLI 486 (660)
Q Consensus 420 d~~vr~~Aa~aL~nLa~-~~en~~~Ive-~GgI~~Lv~LL~~------s~--d~---~v~~~Aa~AL~nLA~~~~n~~~I 486 (660)
+++.|..|+.-|+.--. .++..-.+-. .|.+..|+.=+-+ .+ ++ .-..+|...+-.+|.+|+.+..+
T Consensus 8 ~~~~Re~Al~eLsk~r~~~~~La~~LW~s~G~i~~LLqEIisiYp~l~~~~Lt~~~snRVcnaLaLlQ~vAshpetr~~F 87 (262)
T PF04078_consen 8 NPETRENALLELSKKRESFPDLAPLLWHSFGTIAALLQEIISIYPALSPPNLTARQSNRVCNALALLQCVASHPETRMPF 87 (262)
T ss_dssp SHHHHHHHHHHHHHTCCC-TTHHHHHHTSTTHHHHHHHHHHGGGGGTTTT---HHHHHHHHHHHHHHHHHHH-TTTHHHH
T ss_pred CcchHHHHHHHHHHhhhcccchhHHHHcCCChHHHHHHHHHHHcccCCCcccCHHHHHHHHHHHHHHHHHHcChHHHHHH
Confidence 56667777666654433 2333333333 3445555443321 11 12 23344555566778999999999
Q ss_pred HhcCccHHHHHhhcCC----CCHHHHHHHHHHHHHHh--cChhHHHHHHhccHHHHHHHHhcCCCHHHHHHHHHHHHHhh
Q 006114 487 MSRGGGQLLAKTASKT----DDPQTLRMVAGALANLC--GNEKLHTMLEEDGAIKALLAMVRSGNIDVIAQVARGLANFA 560 (660)
Q Consensus 487 ve~g~I~~Ll~LL~~s----~d~~v~~~Aa~aLanLa--~~~~~r~~iv~~G~V~~Lv~lL~s~~~~v~~~Al~aLanLA 560 (660)
+...+.-.|...|... +...++-.+.|+|+.|. .+++.-..+.....+|..+..|..++.-.+..|..++..|-
T Consensus 88 l~a~iplyLyPfL~tt~k~r~~E~LRLtsLGVIgaLvK~d~~evi~fLl~tEiiplcLr~me~GselSKtvAtfIlqKIL 167 (262)
T PF04078_consen 88 LKAHIPLYLYPFLNTTSKTRPFEYLRLTSLGVIGALVKTDDPEVISFLLQTEIIPLCLRIMEFGSELSKTVATFILQKIL 167 (262)
T ss_dssp HHTTGGGGGHHHHH----SHHHHHHHHHHHHHHHHHHTT--HHHHHHHHCTTHHHHHHHHHHHS-HHHHHHHHHHHHHHH
T ss_pred HHcCchhhehhhhhccccccccchhhHhHHHHHHHHHcCCcHHHHHHHHhhchHHHHHHHHHhccHHHHHHHHHHHHHHH
Confidence 9998877777777532 22356677889999998 46778888899999999999999998888888999888776
Q ss_pred ccchhhhhhcc-hhhhHHHhhcChHHHHH-HhhcCCCHHHHHHHHHHHHHhhcCCccHHHHHh
Q 006114 561 KCESRAIVQGQ-RKGRSHLMEDSALEWLI-ANSKTNSASTRRHVELALCHLAQNEDNARDFIS 621 (660)
Q Consensus 561 ~~~~~~~aq~~-~e~r~~Li~~G~v~~Lv-~lL~s~d~~vr~~Aa~AL~nLa~~~e~~~~Ive 621 (660)
.++. ...-.- ..-|- ..-..++..++ .+....++.+-+++..+-..|+.++..+..+..
T Consensus 168 ~dd~-GL~yiC~t~eRf-~av~~vL~~mV~~l~~~pS~RLLKhIIrCYlRLsdnprar~aL~~ 228 (262)
T PF04078_consen 168 LDDV-GLNYICQTAERF-FAVAMVLNKMVEQLVKQPSPRLLKHIIRCYLRLSDNPRAREALRQ 228 (262)
T ss_dssp HSHH-HHHHHTSSHHHH-HHHHHHHHHHHHHHHHS--HHHHHHHHHHHHHHTTSTTHHHHHHH
T ss_pred cchh-HHHHHhcCHHHH-HHHHHHHHHHHHHHccCCChhHHHHHHHHHHHHccCHHHHHHHHH
Confidence 5432 110000 00111 11123333333 345667899999999999999999977666654
No 187
>KOG1241 consensus Karyopherin (importin) beta 1 [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=95.45 E-value=0.51 Score=55.20 Aligned_cols=153 Identities=13% Similarity=0.068 Sum_probs=92.7
Q ss_pred HHHHHHhhCCC-CHHHHHHHHHHHHHhhCCchhHHHHHH-cCCHHHHHHHH-ccCCCHHHHHHHHHHHHHhhcCch-hHH
Q 006114 409 LPKILQLLTSE-DPDVQIHAVKVVANLAAEDINQEKIVE-EGGLDALLLLL-RTSQNTTILRVASGAIANLAMNEM-NQG 484 (660)
Q Consensus 409 I~~LV~LL~s~-d~~vr~~Aa~aL~nLa~~~en~~~Ive-~GgI~~Lv~LL-~~s~d~~v~~~Aa~AL~nLA~~~~-n~~ 484 (660)
++.|+.....+ ...++..++.+|+-||.+-.-...+-. ...+..++.-. ...++..||-.|..||.|--.... |-.
T Consensus 131 i~~lv~nv~~~~~~~~k~~slealGyice~i~pevl~~~sN~iLtaIv~gmrk~e~s~~vRLaa~~aL~nsLef~~~nF~ 210 (859)
T KOG1241|consen 131 IVTLVSNVGEEQASMVKESSLEALGYICEDIDPEVLEQQSNDILTAIVQGMRKEETSAAVRLAALNALYNSLEFTKANFN 210 (859)
T ss_pred HHHHHHhcccccchHHHHHHHHHHHHHHccCCHHHHHHHHhHHHHHHHhhccccCCchhHHHHHHHHHHHHHHHHHHhhc
Confidence 33344333333 446999999999999995333233322 23455555443 345678899999999998643211 111
Q ss_pred HHHhcC-ccHHHHHhhcCCCCHHHHHHHHHHHHHHh-cChhHHHHHHhccHHHHHHHHhcCCCHHHHHHHHHHHHHhhcc
Q 006114 485 LIMSRG-GGQLLAKTASKTDDPQTLRMVAGALANLC-GNEKLHTMLEEDGAIKALLAMVRSGNIDVIAQVARGLANFAKC 562 (660)
Q Consensus 485 ~Ive~g-~I~~Ll~LL~~s~d~~v~~~Aa~aLanLa-~~~~~r~~iv~~G~V~~Lv~lL~s~~~~v~~~Al~aLanLA~~ 562 (660)
.=.+.+ ++...+.. ..++|..++..|..+|..+. .+-+.-..-+....++.-+..+++.++.|..+++..=.++|.-
T Consensus 211 ~E~ern~iMqvvcEa-tq~~d~~i~~aa~~ClvkIm~LyY~~m~~yM~~alfaitl~amks~~deValQaiEFWsticeE 289 (859)
T KOG1241|consen 211 NEMERNYIMQVVCEA-TQSPDEEIQVAAFQCLVKIMSLYYEFMEPYMEQALFAITLAAMKSDNDEVALQAIEFWSTICEE 289 (859)
T ss_pred cHhhhceeeeeeeec-ccCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHH
Confidence 111111 22233333 24688899999999999886 3333333334445667777778899999988888888877743
No 188
>PF12755 Vac14_Fab1_bd: Vacuolar 14 Fab1-binding region
Probab=95.45 E-value=0.088 Score=46.85 Aligned_cols=87 Identities=17% Similarity=0.118 Sum_probs=56.6
Q ss_pred HHHHHHHHHhhC-CchhHHHHHHcCCHHHHHHHHccCCCHHHHHHHHHHHHHhhcCchhHHHHHh--cCccHHHHHhhcC
Q 006114 425 IHAVKVVANLAA-EDINQEKIVEEGGLDALLLLLRTSQNTTILRVASGAIANLAMNEMNQGLIMS--RGGGQLLAKTASK 501 (660)
Q Consensus 425 ~~Aa~aL~nLa~-~~en~~~Ive~GgI~~Lv~LL~~s~d~~v~~~Aa~AL~nLA~~~~n~~~Ive--~g~I~~Ll~LL~~ 501 (660)
..++..|+.++. -+.......+ ..+|+++..+. ++|+.||..||.+|.|++..-. ..+.. ..+++.|..++.+
T Consensus 4 ~ggli~Laa~ai~l~~~~~~~l~-~Il~pVL~~~~-D~d~rVRy~AcEaL~ni~k~~~--~~~l~~f~~IF~~L~kl~~D 79 (97)
T PF12755_consen 4 KGGLIGLAAVAIALGKDISKYLD-EILPPVLKCFD-DQDSRVRYYACEALYNISKVAR--GEILPYFNEIFDALCKLSAD 79 (97)
T ss_pred hHHHHHHHHHHHHchHhHHHHHH-HHHHHHHHHcC-CCcHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHcC
Confidence 344555555544 2222222222 25899999997 8899999999999999986532 23332 5678889999876
Q ss_pred CCCHHHHHHHHHHHHH
Q 006114 502 TDDPQTLRMVAGALAN 517 (660)
Q Consensus 502 s~d~~v~~~Aa~aLan 517 (660)
+++.|+..| ..|-+
T Consensus 80 -~d~~Vr~~a-~~Ld~ 93 (97)
T PF12755_consen 80 -PDENVRSAA-ELLDR 93 (97)
T ss_pred -CchhHHHHH-HHHHH
Confidence 777777544 44433
No 189
>PF05004 IFRD: Interferon-related developmental regulator (IFRD); InterPro: IPR007701 Interferon-related developmental regulator (IFRD1) is the human homologue of the Rattus norvegicus early response protein PC4 and its murine homologue TIS7 []. The exact function of IFRD1 is unknown but it has been shown that PC4 is necessary for muscle differentiation and that it might have a role in signal transduction. This entry also contains IFRD2 and its murine equivalent SKMc15, which are highly expressed soon after gastrulation and in the hepatic primordium, suggesting an involvement in early hematopoiesis [].
Probab=95.45 E-value=1.1 Score=48.15 Aligned_cols=190 Identities=18% Similarity=0.188 Sum_probs=113.6
Q ss_pred HHHHHHhhCCCCHHHHHHHHHHHHHhhCCchhHHHHHH--cCCHHHHHHHHccCCCHHHHHHHHHHHHHhhcC---chhH
Q 006114 409 LPKILQLLTSEDPDVQIHAVKVVANLAAEDINQEKIVE--EGGLDALLLLLRTSQNTTILRVASGAIANLAMN---EMNQ 483 (660)
Q Consensus 409 I~~LV~LL~s~d~~vr~~Aa~aL~nLa~~~en~~~Ive--~GgI~~Lv~LL~~s~d~~v~~~Aa~AL~nLA~~---~~n~ 483 (660)
+...+..+.......|..|+..+.++......-..+.. .-.++.+...++.+.. .=+..|+.+++-++.. ....
T Consensus 45 L~~~Id~l~eK~~~~Re~aL~~l~~~l~~~~~~d~v~~~~~tL~~~~~k~lkkg~~-~E~~lA~~~l~Ll~ltlg~g~~~ 123 (309)
T PF05004_consen 45 LKEAIDLLTEKSSSTREAALEALIRALSSRYLPDFVEDRRETLLDALLKSLKKGKS-EEQALAARALALLALTLGAGEDS 123 (309)
T ss_pred HHHHHHHHHhcCHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHHhccCCH-HHHHHHHHHHHHHhhhcCCCccH
Confidence 44455666667799999999999987764333333332 2237777888875544 3345677777666544 2334
Q ss_pred HHHHhcCccHHHHHhhcCCC-CHHHHHHHHHHHHHHh----cChhHHHHHHhccHHHHHHH--Hhc----------CCCH
Q 006114 484 GLIMSRGGGQLLAKTASKTD-DPQTLRMVAGALANLC----GNEKLHTMLEEDGAIKALLA--MVR----------SGNI 546 (660)
Q Consensus 484 ~~Ive~g~I~~Ll~LL~~s~-d~~v~~~Aa~aLanLa----~~~~~r~~iv~~G~V~~Lv~--lL~----------s~~~ 546 (660)
..+++ ...|.|..++.++. .+.++..++.+|+-++ .+++.-.... ..+..+.. .++ .+++
T Consensus 124 ~ei~~-~~~~~L~~~l~d~s~~~~~R~~~~~aLai~~fv~~~d~~~~~~~~--~~le~if~~~~~~~~~~~~~~~~~~~~ 200 (309)
T PF05004_consen 124 EEIFE-ELKPVLKRILTDSSASPKARAACLEALAICTFVGGSDEEETEELM--ESLESIFLLSILKSDGNAPVVAAEDDA 200 (309)
T ss_pred HHHHH-HHHHHHHHHHhCCccchHHHHHHHHHHHHHHHhhcCChhHHHHHH--HHHHHHHHHHhcCcCCCcccccCCCcc
Confidence 44544 36788888887653 4456566666666554 2222111111 12221111 111 1245
Q ss_pred HHHHHHHHHHHHhhccchhhhhhcchhhhHHHhhcChHHHHHHhhcCCCHHHHHHHHHHHHHhh
Q 006114 547 DVIAQVARGLANFAKCESRAIVQGQRKGRSHLMEDSALEWLIANSKTNSASTRRHVELALCHLA 610 (660)
Q Consensus 547 ~v~~~Al~aLanLA~~~~~~~aq~~~e~r~~Li~~G~v~~Lv~lL~s~d~~vr~~Aa~AL~nLa 610 (660)
.+...|+.+-+-|...-+.. ... -.-...+|.|+.+|.+.+..||.+|..+|+-|.
T Consensus 201 ~l~~aAL~aW~lLlt~~~~~------~~~--~~~~~~~~~l~~lL~s~d~~VRiAAGEaiAll~ 256 (309)
T PF05004_consen 201 ALVAAALSAWALLLTTLPDS------KLE--DLLEEALPALSELLDSDDVDVRIAAGEAIALLY 256 (309)
T ss_pred HHHHHHHHHHHHHHhcCCHH------HHH--HHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHH
Confidence 78888888888777543221 011 112457899999999999999999999998773
No 190
>KOG4535 consensus HEAT and armadillo repeat-containing protein [General function prediction only]
Probab=95.42 E-value=0.024 Score=62.68 Aligned_cols=181 Identities=13% Similarity=0.098 Sum_probs=105.5
Q ss_pred CHHHHHHHHHHHHHhhcCchhHHH-HHhcCccHHHHHhhcCCCCHHHHHHHHHHHHHHh-----cChhHHHHHHhccHH-
Q 006114 462 NTTILRVASGAIANLAMNEMNQGL-IMSRGGGQLLAKTASKTDDPQTLRMVAGALANLC-----GNEKLHTMLEEDGAI- 534 (660)
Q Consensus 462 d~~v~~~Aa~AL~nLA~~~~n~~~-Ive~g~I~~Ll~LL~~s~d~~v~~~Aa~aLanLa-----~~~~~r~~iv~~G~V- 534 (660)
+.-++..|.++++-+.-||..+.. +.-.++...++..+.+ ..-.++..++|++.|++ ..|..+..-.+.-|+
T Consensus 404 ~~lv~~aA~Ra~~VyVLHp~lr~d~~fv~~aa~~il~sl~d-~~ln~r~KaawtlgnITdAL~~~~Ps~~s~~eR~sg~l 482 (728)
T KOG4535|consen 404 NRLVKAAASRALGVYVLHPCLRQDVIFVADAANAILMSLED-KSLNVRAKAAWSLGNITDALIVNMPTPDSFQERFSGLL 482 (728)
T ss_pred HHHHHHHHHhhceeEEeccchhhhHHHHHHHHHHHHHHhhh-HhHhHHHHHHHHhhhhHHHHHcCCCCchHHHHHHHHHH
Confidence 344555666666666666665443 3345555666666643 34568889999999997 445533333332222
Q ss_pred -HHHHHHh---cCCCHHHHHHHHHHHHHhhccchhhhhhcchhhhHHHhhcChHHHHH-HhhcCCCHHHHHHHHHHHHHh
Q 006114 535 -KALLAMV---RSGNIDVIAQVARGLANFAKCESRAIVQGQRKGRSHLMEDSALEWLI-ANSKTNSASTRRHVELALCHL 609 (660)
Q Consensus 535 -~~Lv~lL---~s~~~~v~~~Al~aLanLA~~~~~~~aq~~~e~r~~Li~~G~v~~Lv-~lL~s~d~~vr~~Aa~AL~nL 609 (660)
..++... ...+..|..+++++|+|+...-... .+-+-. .+..|.+..++ .......-.|+++||.+++||
T Consensus 483 l~~~~~~A~~~~Ad~dkV~~navraLgnllQvlq~i----~~~~~~-e~~~~~~~~l~~~v~~~~~~kV~WNaCya~gNL 557 (728)
T KOG4535|consen 483 LLKMLRSAIEASADKDKVKSNAVRALGNLLQFLQPI----EKPTFA-EIIEESIQALISTVLTEAAMKVRWNACYAMGNL 557 (728)
T ss_pred HHHHHHHHHHhhhhhhhhhhHHHHHHhhHHHHHHHh----hhccHH-HHHHHHHHhcccceecccccccchHHHHHHHHh
Confidence 2222222 2345679999999999987321100 011111 22233333222 333445678999999999999
Q ss_pred hcCCcc--HHHHHhcCcHHHHHHHHhcCChHHHHHHHHHHH
Q 006114 610 AQNEDN--ARDFISRGGAKELVQISIESSREDIRNLAKKTM 648 (660)
Q Consensus 610 a~~~e~--~~~Ive~G~l~~Lv~lL~s~s~~~ir~~A~~~L 648 (660)
-.++.. ...=+...+.+.|+.++.+..+-.+|-.|..+|
T Consensus 558 fkn~a~~lq~~~wA~~~F~~L~~Lv~~~~NFKVRi~AA~aL 598 (728)
T KOG4535|consen 558 FKNPALPLQTAPWASQAFNALTSLVTSCKNFKVRIRAAAAL 598 (728)
T ss_pred hcCccccccCCCchHHHHHHHHHHHHHhccceEeehhhhhh
Confidence 998743 222234557788999998877766665555555
No 191
>KOG0933 consensus Structural maintenance of chromosome protein 2 (chromosome condensation complex Condensin, subunit E) [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning]
Probab=95.35 E-value=9.5 Score=46.38 Aligned_cols=79 Identities=18% Similarity=0.198 Sum_probs=35.9
Q ss_pred HHHHHHHHhhhhhhhhhhhhhhHHhHHHHHHHhhhhhcc-ccchhHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHH
Q 006114 238 YEKKIAELNKKLEDEHACFEGAVEQLDMVKKLLSDYQNS-NQGQKEVHELCVKLKETRQLHESAVYEVQTLKSEYKNLLE 316 (660)
Q Consensus 238 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~e~~~Lk~~Le~e~~~~e~~e~E~~~lks~l~~l~~ 316 (660)
.+++|..|.-.+.+-+|-..+++...+.+...|-|.-.- ..+..++..+-...+...+.+...+-++..|-.++..+..
T Consensus 841 ~~~~~~~l~~e~~~l~~kv~~~~~~~~~~~~el~~~k~k~~~~dt~i~~~~~~~e~~~~e~~~~~l~~kkle~e~~~~~~ 920 (1174)
T KOG0933|consen 841 LEKQISSLKSELGNLEAKVDKVEKDVKKAQAELKDQKAKQRDIDTEISGLLTSQEKCLSEKSDGELERKKLEHEVTKLES 920 (1174)
T ss_pred HHHHHHHHHHHHHHHHHHHHhHHhHHHHHHHHHHHHHHHHHhhhHHHhhhhhHHHHHHHHhhcccchHHHHHhHHHHhhh
Confidence 344555555555555555555555555555444443322 2233344444444444444444444333333344443333
No 192
>KOG0018 consensus Structural maintenance of chromosome protein 1 (sister chromatid cohesion complex Cohesin, subunit SMC1) [Cell cycle control, cell division, chromosome partitioning]
Probab=95.33 E-value=4.7 Score=49.13 Aligned_cols=165 Identities=18% Similarity=0.242 Sum_probs=96.8
Q ss_pred hhhhhhHHHHhhhhHHHHHHHHHhhhhhhhhhhhhHHHHHHHHHHHhhhhhhhhhhhhhhHHHHHHhhHHHHHHHHHHHH
Q 006114 108 LVTRSEFLEKENAHLELEVEKILGELNHQKDQNNLKREKIVQLEISLKNSKQQQLDNSSYQKVLADTTQMYEKKITELIK 187 (660)
Q Consensus 108 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ 187 (660)
.--++-.+.++..+.+.+|++|....+..-+..-.-.=.... .. =+.-||.......|+....++.-+..+..
T Consensus 723 ~~p~i~~i~r~l~~~e~~~~~L~~~~n~ved~if~~f~~~ig----v~---ir~Yee~~~~~~~a~k~~ef~~q~~~l~~ 795 (1141)
T KOG0018|consen 723 FGPEISEIKRKLQNREGEMKELEERMNKVEDRIFKGFCRRIG----VR---IREYEERELQQEFAKKRLEFENQKAKLEN 795 (1141)
T ss_pred hCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhcC----ee---eehHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 334444556666666666666655554433311000000000 00 11223333356778888999999999999
Q ss_pred HHHHHHhhhhchHHHHHHHHHHHhhhhhhHHHHhhhhhHHHHHHhhHHHHHHHHHHHHhhhhhhhhhhhhhhHHhHHHHH
Q 006114 188 QLEIEHARSEGAEEQVDTMKKLISDNQKSIEQYEMENSTYQKALADTTQLYEKKIAELNKKLEDEHACFEGAVEQLDMVK 267 (660)
Q Consensus 188 ~l~~e~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 267 (660)
+|+-|+. .-....+-.+++.+.+.++.+.-. .+ -...|+|.|+++ .++|. +
T Consensus 796 ~l~fe~~--~d~~~~ve~~~~~v~~~~~~~~~~-------~~----~e~~~~k~i~e~-~~~e~---k------------ 846 (1141)
T KOG0018|consen 796 QLDFEKQ--KDTQRRVERWERSVEDLEKEIEGL-------KK----DEEAAEKIIAEI-EELEK---K------------ 846 (1141)
T ss_pred hhhheec--ccHHHHHHHHHHHHHHHHHhHHhh-------HH----HHHHHHHHHhhH-HHHHH---H------------
Confidence 9999887 667777888888888887544433 33 345677788887 66664 0
Q ss_pred HHhhhhhccccchhHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHH
Q 006114 268 KLLSDYQNSNQGQKEVHELCVKLKETRQLHESAVYEVQTLKSEYK 312 (660)
Q Consensus 268 ~~~~~~~~~~~~~~e~~~Lk~~Le~e~~~~e~~e~E~~~lks~l~ 312 (660)
+ .++...-..|+.+.++.+.+.......+..++..+.|++.
T Consensus 847 ~----k~~~~~~~~e~~e~~k~~~~~~~~~tkl~~~i~~~es~ie 887 (1141)
T KOG0018|consen 847 N----KSKFEKKEDEINEVKKILRRLVKELTKLDKEITSIESKIE 887 (1141)
T ss_pred H----HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhHHH
Confidence 0 2233344556666677777777766666666665555554
No 193
>KOG0213 consensus Splicing factor 3b, subunit 1 [RNA processing and modification]
Probab=95.30 E-value=0.069 Score=61.84 Aligned_cols=181 Identities=18% Similarity=0.121 Sum_probs=118.6
Q ss_pred CCHHHHHHhhCCCCHHHHHHHHHHHHHhhC-Cchh---HHHHHHcCCHHHHHHHHccCCCHHHHHHHHHHHHHhhcCchh
Q 006114 407 VGLPKILQLLTSEDPDVQIHAVKVVANLAA-EDIN---QEKIVEEGGLDALLLLLRTSQNTTILRVASGAIANLAMNEMN 482 (660)
Q Consensus 407 ggI~~LV~LL~s~d~~vr~~Aa~aL~nLa~-~~en---~~~Ive~GgI~~Lv~LL~~s~d~~v~~~Aa~AL~nLA~~~~n 482 (660)
+.+|.|...|++-...|+.+++..++.||. .++. +.-+. ..--|+.+|. +.+..++++|...++-||.
T Consensus 883 dllPrltPILknrheKVqen~IdLvg~IadrgpE~v~aREWMR---IcfeLlelLk-ahkK~iRRaa~nTfG~Iak---- 954 (1172)
T KOG0213|consen 883 DLLPRLTPILKNRHEKVQENCIDLVGTIADRGPEYVSAREWMR---ICFELLELLK-AHKKEIRRAAVNTFGYIAK---- 954 (1172)
T ss_pred hhcccchHhhhhhHHHHHHHHHHHHHHHHhcCcccCCHHHHHH---HHHHHHHHHH-HHHHHHHHHHHhhhhHHHH----
Confidence 568999999999999999999999999998 4543 22222 2344777887 6678899999999988864
Q ss_pred HHHHHhcCccHHHHHhhcCCCCHHHHHHHHHHHHHHhcChhHHHHHHhccHHHHHHHHhcCCCHHHHHHHHHHHHHhhcc
Q 006114 483 QGLIMSRGGGQLLAKTASKTDDPQTLRMVAGALANLCGNEKLHTMLEEDGAIKALLAMVRSGNIDVIAQVARGLANFAKC 562 (660)
Q Consensus 483 ~~~Ive~g~I~~Ll~LL~~s~d~~v~~~Aa~aLanLa~~~~~r~~iv~~G~V~~Lv~lL~s~~~~v~~~Al~aLanLA~~ 562 (660)
.|.-.+++..|++-|+. .+-+.+....-+|+-.+. .+. -..++|+|++=-+.++..|+.-++.+|+.+=..
T Consensus 955 --aIGPqdVLatLlnnLkv-qeRq~RvcTtvaIaIVaE---~c~---pFtVLPalmneYrtPe~nVQnGVLkalsf~Fey 1025 (1172)
T KOG0213|consen 955 --AIGPQDVLATLLNNLKV-QERQNRVCTTVAIAIVAE---TCG---PFTVLPALMNEYRTPEANVQNGVLKALSFMFEY 1025 (1172)
T ss_pred --hcCHHHHHHHHHhcchH-HHHHhchhhhhhhhhhhh---hcC---chhhhHHHHhhccCchhHHHHhHHHHHHHHHHH
Confidence 33334566667766643 222222222222322221 000 013667777766778888888888887765421
Q ss_pred chhhhhhcchhhhHHHhhcChHHHHHHhhcCCCHHHHHHHHHHHHHhhcCC
Q 006114 563 ESRAIVQGQRKGRSHLMEDSALEWLIANSKTNSASTRRHVELALCHLAQNE 613 (660)
Q Consensus 563 ~~~~~aq~~~e~r~~Li~~G~v~~Lv~lL~s~d~~vr~~Aa~AL~nLa~~~ 613 (660)
.+..++..+ ..+.|.|-..|.+.|..-|..|+.++.+|+.+.
T Consensus 1026 -------igemskdYi--yav~PlleDAlmDrD~vhRqta~~~I~Hl~Lg~ 1067 (1172)
T KOG0213|consen 1026 -------IGEMSKDYI--YAVTPLLEDALMDRDLVHRQTAMNVIKHLALGV 1067 (1172)
T ss_pred -------HHHHhhhHH--HHhhHHHHHhhccccHHHHHHHHHHHHHHhcCC
Confidence 112233333 346777788888889999999999999998764
No 194
>KOG2611 consensus Neurochondrin/leucine-rich protein (Neurochondrin) [Function unknown]
Probab=95.30 E-value=0.54 Score=52.49 Aligned_cols=100 Identities=18% Similarity=0.207 Sum_probs=78.7
Q ss_pred hHHHHHhCCCHHHHHHhhCC-------CCHHHHHHHHHHHHHhhCCchhH--HHHHHcCCHHHHHHHHccCCCHH-----
Q 006114 399 TIAKICDEVGLPKILQLLTS-------EDPDVQIHAVKVVANLAAEDINQ--EKIVEEGGLDALLLLLRTSQNTT----- 464 (660)
Q Consensus 399 ~~~~I~e~ggI~~LV~LL~s-------~d~~vr~~Aa~aL~nLa~~~en~--~~Ive~GgI~~Lv~LL~~s~d~~----- 464 (660)
+.+.++++.|.+.+=++|.+ +|.-.+..++.+|+-++..|+.. ..|++ .||.|+..+....|++
T Consensus 48 ~kk~vfeAVGf~Fl~rLl~tk~~p~dcpd~Vy~~i~itvLacFC~~pElAsh~~~v~--~IP~llev~~~~~d~d~e~~~ 125 (698)
T KOG2611|consen 48 NKKLVFEAVGFHFLDRLLRTKSGPGDCPDDVYLQISITVLACFCRVPELASHEEMVS--RIPLLLEVMSKGIDTDYEDNL 125 (698)
T ss_pred hhhhHHHHhccchHHHHhhcCCCCCCCcHHHHHHHHHHHHHHHhCChhhccCHHHHH--hhhHHHHHHHhcCCCchhhhH
Confidence 44558899999999888863 24456677888888888887764 34554 5999999997665554
Q ss_pred -HHHHHHHHHHHhhcCchhHHHHHhcCccHHHHHhhc
Q 006114 465 -ILRVASGAIANLAMNEMNQGLIMSRGGGQLLAKTAS 500 (660)
Q Consensus 465 -v~~~Aa~AL~nLA~~~~n~~~Ive~g~I~~Ll~LL~ 500 (660)
+...+-.+|..+|.++.+...++..|+++.+..+-.
T Consensus 126 ~m~~d~Y~cL~~Va~~e~G~~~Lia~G~~~~~~Q~y~ 162 (698)
T KOG2611|consen 126 IMLEDCYECLYLVATAEAGLMTLIASGGLRVIAQMYE 162 (698)
T ss_pred HHHHHHHHHHHHHhcCCchhHHHHhcCchHHHHHHHh
Confidence 667788999999999999999999999999987653
No 195
>PF11701 UNC45-central: Myosin-binding striated muscle assembly central; InterPro: IPR024660 The UNC-45 or small muscle protein 1 of Caenorhabditis elegans is expressed in two forms from different genomic positions in mammals: as a general tissue protein (UNC-45a) and as a specific form (UNC-45b) expressed only in striated and skeletal muscle. Myofibril formation requires both UNC-45 forms, consistent with the fact that the cytoskeleton is necessary for the development and maintenance of organised myofibrils []. Rng3 (Ring assembly protein 3), the homologue in Schizosaccharomyces pombe, is crucial for cell shape, normal actin cytoskeleton, and contractile ring assembly, and is essential for assembly of the myosin II-containing progenitors of the contractile ring. Widespread defects in the cytoskeleton are found in null mutants of all three fungal proteins []. Mammalian Unc45 is found to act as a specific chaperone during the folding of myosin and the assembly of striated muscle by forming a stable complex with the general chaperone Hsp90 []. All members carry up to three amino-terminal tetratricopeptide repeat (TPR) and a UCS domain at the C terminus that contains a number of Arm repeats. ; PDB: 3OPB_A 3NOW_A.
Probab=95.28 E-value=0.11 Score=50.29 Aligned_cols=147 Identities=20% Similarity=0.244 Sum_probs=96.0
Q ss_pred CHHHHHHHHcc-CCCHHHHHHHHHHHHHhhcCchhHHHHHhcCccHHHHHhhcCCCCHHHHHHHHHHHHHHh-cChhHHH
Q 006114 449 GLDALLLLLRT-SQNTTILRVASGAIANLAMNEMNQGLIMSRGGGQLLAKTASKTDDPQTLRMVAGALANLC-GNEKLHT 526 (660)
Q Consensus 449 gI~~Lv~LL~~-s~d~~v~~~Aa~AL~nLA~~~~n~~~Ive~g~I~~Ll~LL~~s~d~~v~~~Aa~aLanLa-~~~~~r~ 526 (660)
.++.++..|.. ...++++..|+-++..+- +..+..+.+ -+-+.+-..+.. .+.+....+..++..+- ..|+...
T Consensus 4 ~l~~lL~~L~~~~~~~~~r~~a~v~l~k~l--~~~~~~~~~-~~~~~i~~~~~~-~~~d~~i~~~~~l~~lfp~~~dv~~ 79 (157)
T PF11701_consen 4 ELDTLLTSLDMLRQPEEVRSHALVILSKLL--DAAREEFKE-KISDFIESLLDE-GEMDSLIIAFSALTALFPGPPDVGS 79 (157)
T ss_dssp CCCHHHHHHHCTTTSCCHHHHHHHHHHHHH--HHHHHHHHH-HHHHHHHHHHCC-HHCCHHHHHHHHHHHHCTTTHHHHH
T ss_pred HHHHHHHHhcccCCCHhHHHHHHHHHHHHH--HHhHHHHHH-HHHHHHHHHHcc-ccchhHHHHHHHHHHHhCCCHHHHH
Confidence 45566666653 346678888888888773 222222222 122333333332 23345556677777775 5566655
Q ss_pred HHH-hccHHHHHHHHhc--CCCHHHHHHHHHHHHHhhccchhhhhhcchhhhHHHhhcChHHHHHHhhc-CCCHH-HHHH
Q 006114 527 MLE-EDGAIKALLAMVR--SGNIDVIAQVARGLANFAKCESRAIVQGQRKGRSHLMEDSALEWLIANSK-TNSAS-TRRH 601 (660)
Q Consensus 527 ~iv-~~G~V~~Lv~lL~--s~~~~v~~~Al~aLanLA~~~~~~~aq~~~e~r~~Li~~G~v~~Lv~lL~-s~d~~-vr~~ 601 (660)
.+. ..|.++.++.++. +.+..+...++.+|..=|.. +.+...+...+++||...+. ++++. +|..
T Consensus 80 ~l~~~eg~~~~l~~~~~~~~~~~~~~~~~lell~aAc~d----------~~~r~~I~~~~~~~L~~~~~~~~~~~~ir~~ 149 (157)
T PF11701_consen 80 ELFLSEGFLESLLPLASRKSKDRKVQKAALELLSAACID----------KSCRTFISKNYVSWLKELYKNSKDDSEIRVL 149 (157)
T ss_dssp HHCCTTTHHHHHHHHHH-CTS-HHHHHHHHHHHHHHTTS----------HHHHHCCHHHCHHHHHHHTTTCC-HH-CHHH
T ss_pred HHHhhhhHHHHHHHHHhcccCCHHHHHHHHHHHHHHHcc----------HHHHHHHHHHHHHHHHHHHccccchHHHHHH
Confidence 554 6799999999999 88899999999999765543 44555677789999999995 55666 8888
Q ss_pred HHHHHHHh
Q 006114 602 VELALCHL 609 (660)
Q Consensus 602 Aa~AL~nL 609 (660)
|+-.|+.|
T Consensus 150 A~v~L~Kl 157 (157)
T PF11701_consen 150 AAVGLCKL 157 (157)
T ss_dssp HHHHHHHC
T ss_pred HHHHHhcC
Confidence 88888754
No 196
>KOG2025 consensus Chromosome condensation complex Condensin, subunit G [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning]
Probab=95.24 E-value=0.57 Score=54.48 Aligned_cols=116 Identities=17% Similarity=0.159 Sum_probs=81.5
Q ss_pred CCHHHHHHhhCCCCHHHHHHHHHHHHHhhCCchhHHHHHHcCCHHHHHHHHccCCCHHHHHHHHHHHHHhhcCchhHHHH
Q 006114 407 VGLPKILQLLTSEDPDVQIHAVKVVANLAAEDINQEKIVEEGGLDALLLLLRTSQNTTILRVASGAIANLAMNEMNQGLI 486 (660)
Q Consensus 407 ggI~~LV~LL~s~d~~vr~~Aa~aL~nLa~~~en~~~Ive~GgI~~Lv~LL~~s~d~~v~~~Aa~AL~nLA~~~~n~~~I 486 (660)
|.+..|++...+++-.||.+++.+|+-+..+..-..-.+-.+-...|..-|. +..|.|+..|..||..+-..|.+
T Consensus 85 ~~f~hlLRg~Eskdk~VRfrvlqila~l~d~~~eidd~vfn~l~e~l~~Rl~-Drep~VRiqAv~aLsrlQ~d~~d---- 159 (892)
T KOG2025|consen 85 GTFYHLLRGTESKDKKVRFRVLQILALLSDENAEIDDDVFNKLNEKLLIRLK-DREPNVRIQAVLALSRLQGDPKD---- 159 (892)
T ss_pred HHHHHHHhcccCcchhHHHHHHHHHHHHhccccccCHHHHHHHHHHHHHHHh-ccCchHHHHHHHHHHHHhcCCCC----
Confidence 5566777777899999999999999888774333333344445666666665 67889999999999998644221
Q ss_pred HhcCccHHHHHhhcCCCCHHHHHHHHHHHHHHhcChhHHHHHHh
Q 006114 487 MSRGGGQLLAKTASKTDDPQTLRMVAGALANLCGNEKLHTMLEE 530 (660)
Q Consensus 487 ve~g~I~~Ll~LL~~s~d~~v~~~Aa~aLanLa~~~~~r~~iv~ 530 (660)
-+..++..+..++.+.++++|++.| |.|++.++.....|++
T Consensus 160 ee~~v~n~l~~liqnDpS~EVRRaa---LsnI~vdnsTlp~Ive 200 (892)
T KOG2025|consen 160 EECPVVNLLKDLIQNDPSDEVRRAA---LSNISVDNSTLPCIVE 200 (892)
T ss_pred CcccHHHHHHHHHhcCCcHHHHHHH---HHhhccCcccchhHHH
Confidence 1234567788888888999999855 4566656555555543
No 197
>PF06025 DUF913: Domain of Unknown Function (DUF913); InterPro: IPR010314 This is a domain of unknown function found towards the N terminus of a family of E3 ubiquitin protein ligases, including yeast TOM1, many of which appear to play a role in mRNA transcription and processing. This domain is found in association with and immediately C-terminal to another domain of unknown function: IPR010309 from INTERPRO.
Probab=95.23 E-value=0.19 Score=55.53 Aligned_cols=134 Identities=16% Similarity=0.223 Sum_probs=96.0
Q ss_pred hhHHHHHhCCCHHHHH-HhhCCC---CHHHHHHHHHHHHHhhC-CchhHHHHHHcCCHHHHHHHHc-cC--CCHHHHHHH
Q 006114 398 ATIAKICDEVGLPKIL-QLLTSE---DPDVQIHAVKVVANLAA-EDINQEKIVEEGGLDALLLLLR-TS--QNTTILRVA 469 (660)
Q Consensus 398 ~~~~~I~e~ggI~~LV-~LL~s~---d~~vr~~Aa~aL~nLa~-~~en~~~Ive~GgI~~Lv~LL~-~s--~d~~v~~~A 469 (660)
...+-+++.+.++..+ ..+... ...+-..|+.++..+.. +|..-..+.+.|.++.++..+. .+ ++.++....
T Consensus 96 ~~lrnl~D~s~L~~sL~~Il~n~~~FG~~v~s~a~~ivs~~I~nePT~~~~l~e~Gl~~~~L~~i~~~~i~~s~e~l~~l 175 (379)
T PF06025_consen 96 DRLRNLIDSSSLLSSLKHILENPEVFGPSVFSLAINIVSDFIHNEPTSFSILQEAGLIDAFLDAITAKGILPSSEVLTSL 175 (379)
T ss_pred cccccccchhhHHHHHHHHHhCccccchHHHHHHHHHHHHHHhcCCchhHHHHHcCChHHHHHHHhccCCCCcHHHHHHH
Confidence 3445566645555444 555543 57788889999999888 5656677778888999999987 32 567888888
Q ss_pred HHHHHHhhcCchhHHHHHhcCccHHHHHhhcCCCCHHH------HHHHHHHHHHHh-cChhHHHHHHhc
Q 006114 470 SGAIANLAMNEMNQGLIMSRGGGQLLAKTASKTDDPQT------LRMVAGALANLC-GNEKLHTMLEED 531 (660)
Q Consensus 470 a~AL~nLA~~~~n~~~Ive~g~I~~Ll~LL~~s~d~~v------~~~Aa~aLanLa-~~~~~r~~iv~~ 531 (660)
-.+|..||-+..+.+.+.+.+.++.++.++.++..... ....-.++-.|. +.|.++..+++.
T Consensus 176 P~~l~AicLN~~Gl~~~~~~~~l~~~f~if~s~~~~~~l~~~d~a~~lG~~~DEL~RH~p~Lk~~i~~~ 244 (379)
T PF06025_consen 176 PNVLSAICLNNRGLEKVKSSNPLDKLFEIFTSPDYVKALRRRDTASNLGNSFDELMRHHPSLKPDIIDA 244 (379)
T ss_pred HHHHhHHhcCHHHHHHHHhcChHHHHHHHhCCHHHHHHhcccchHHHHHHHHHHHHccCHHHHHHHHHH
Confidence 89999999999999999999999999999875322222 222223444555 778888877663
No 198
>PF12719 Cnd3: Nuclear condensing complex subunits, C-term domain
Probab=95.22 E-value=0.44 Score=50.72 Aligned_cols=168 Identities=15% Similarity=0.166 Sum_probs=117.3
Q ss_pred HHHHH-HHHccCCCHHHHHHHHHHHHHhhcCchhHHHHHhcCccHHHHHhhcCCCCHHHHHHHHHHHHHHh--cChhHHH
Q 006114 450 LDALL-LLLRTSQNTTILRVASGAIANLAMNEMNQGLIMSRGGGQLLAKTASKTDDPQTLRMVAGALANLC--GNEKLHT 526 (660)
Q Consensus 450 I~~Lv-~LL~~s~d~~v~~~Aa~AL~nLA~~~~n~~~Ive~g~I~~Ll~LL~~s~d~~v~~~Aa~aLanLa--~~~~~r~ 526 (660)
+..|+ ..+. ++++.++..|..+|+-+|.-+. .+. ...++.+...+.. +++.++..|+.+|.-+. +....-.
T Consensus 28 l~~lI~P~v~-~~~~~vR~~al~cLGl~~Lld~---~~a-~~~l~l~~~~~~~-~~~~v~~~al~~l~Dll~~~g~~~~~ 101 (298)
T PF12719_consen 28 LDSLILPAVQ-SSDPAVRELALKCLGLCCLLDK---ELA-KEHLPLFLQALQK-DDEEVKITALKALFDLLLTHGIDIFD 101 (298)
T ss_pred HHHHHHHHhc-CCCHHHHHHHHHHHHHHHHhCh---HHH-HHHHHHHHHHHHh-CCHHHHHHHHHHHHHHHHHcCchhcc
Confidence 44444 4555 7889999999999998886533 111 1246777777754 68899999999999886 2222221
Q ss_pred HH-------HhccHHHHHHHHhcCCCHHHHHHHHHHHHHhhccchhhhhhcchhhhHHHhh-cChHHHHHHhhcC----C
Q 006114 527 ML-------EEDGAIKALLAMVRSGNIDVIAQVARGLANFAKCESRAIVQGQRKGRSHLME-DSALEWLIANSKT----N 594 (660)
Q Consensus 527 ~i-------v~~G~V~~Lv~lL~s~~~~v~~~Al~aLanLA~~~~~~~aq~~~e~r~~Li~-~G~v~~Lv~lL~s----~ 594 (660)
.. ...+.+..+.+.+.+.+++++..|+.+++-|-.++ .+.+ ..++..|+-+.-+ +
T Consensus 102 ~~~~~~~~~~~~~l~~~l~~~l~~~~~~~~~~a~EGl~KLlL~~-------------~i~~~~~vL~~Lll~yF~p~t~~ 168 (298)
T PF12719_consen 102 SESDNDESVDSKSLLKILTKFLDSENPELQAIAVEGLCKLLLSG-------------RISDPPKVLSRLLLLYFNPSTED 168 (298)
T ss_pred chhccCccchHhHHHHHHHHHHhcCCHHHHHHHHHHHHHHHhcC-------------CCCcHHHHHHHHHHHHcCcccCC
Confidence 11 12456777888899999999999999999876542 1223 3455555544333 3
Q ss_pred CHHHHHHHHHHHHHhhcCCccHHHHHhcCcHHHHHHHHhcCC
Q 006114 595 SASTRRHVELALCHLAQNEDNARDFISRGGAKELVQISIESS 636 (660)
Q Consensus 595 d~~vr~~Aa~AL~nLa~~~e~~~~Ive~G~l~~Lv~lL~s~s 636 (660)
+..+|..-...+-..|......+.++..+.+|.+..+.....
T Consensus 169 ~~~LrQ~L~~Ffp~y~~s~~~~Q~~l~~~f~~~l~~~~~~~~ 210 (298)
T PF12719_consen 169 NQRLRQCLSVFFPVYASSSPENQERLAEAFLPTLRTLSNAPD 210 (298)
T ss_pred cHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHhCcc
Confidence 467888888888888887776678888888899888887654
No 199
>KOG0567 consensus HEAT repeat-containing protein [General function prediction only]
Probab=95.22 E-value=0.43 Score=49.71 Aligned_cols=204 Identities=19% Similarity=0.192 Sum_probs=114.3
Q ss_pred chhhhhhcccCCCccccccchhhhhhcCchhHHHHHhCCCHHHHHHhhC--CCCHHHHHHHHHHHHHhhCCchhHHHHHH
Q 006114 369 DYISKGSSRFGAPMSLQKSNPSRELSGQRATIAKICDEVGLPKILQLLT--SEDPDVQIHAVKVVANLAAEDINQEKIVE 446 (660)
Q Consensus 369 g~i~~l~~~L~~~~~~vr~~~~~~laa~~~~~~~I~e~ggI~~LV~LL~--s~d~~vr~~Aa~aL~nLa~~~en~~~Ive 446 (660)
+.+..+..++.+....+++..+..++ ++....++|.|+..|. +..+-||-.|+.+|+++.. +
T Consensus 36 ~~i~~i~ka~~d~s~llkhe~ay~Lg-------Q~~~~~Av~~l~~vl~desq~pmvRhEAaealga~~~-~-------- 99 (289)
T KOG0567|consen 36 AAIKAITKAFIDDSALLKHELAYVLG-------QMQDEDAVPVLVEVLLDESQEPMVRHEAAEALGAIGD-P-------- 99 (289)
T ss_pred HHHHHHHHhcccchhhhccchhhhhh-------hhccchhhHHHHHHhcccccchHHHHHHHHHHHhhcc-h--------
Confidence 44666766766665566665444432 2445578999998886 4567888899999987762 2
Q ss_pred cCCHHHHHHHHccCCCHHHHHHHHHHHHHhhcCchhHH-----HHH--------hcCccHHHHHhhcCCCCHHH-HHHHH
Q 006114 447 EGGLDALLLLLRTSQNTTILRVASGAIANLAMNEMNQG-----LIM--------SRGGGQLLAKTASKTDDPQT-LRMVA 512 (660)
Q Consensus 447 ~GgI~~Lv~LL~~s~d~~v~~~Aa~AL~nLA~~~~n~~-----~Iv--------e~g~I~~Ll~LL~~s~d~~v-~~~Aa 512 (660)
+.++.|-... .++-..|+..+..||..+-....... ... ..+-|.-|-..|.+..-|.. +..|.
T Consensus 100 -~~~~~l~k~~-~dp~~~v~ETc~lAi~rle~~~~~~~~~~~~p~~SvdPa~p~~~ssv~~lr~~lld~t~~l~~Ry~am 177 (289)
T KOG0567|consen 100 -ESLEILTKYI-KDPCKEVRETCELAIKRLEWKDIIDKIANSSPYISVDPAPPANLSSVHELRAELLDETKPLFERYRAM 177 (289)
T ss_pred -hhHHHHHHHh-cCCccccchHHHHHHHHHHHhhccccccccCccccCCCCCccccccHHHHHHHHHhcchhHHHHHhhh
Confidence 2355555555 36666677766666665532111100 000 11112222222222222222 22344
Q ss_pred HHHHHHhcChh--------------HH-------HHHHhccHHHHHHHHhc--CCCHHHHHHHHHHHHHhhccchhhhhh
Q 006114 513 GALANLCGNEK--------------LH-------TMLEEDGAIKALLAMVR--SGNIDVIAQVARGLANFAKCESRAIVQ 569 (660)
Q Consensus 513 ~aLanLa~~~~--------------~r-------~~iv~~G~V~~Lv~lL~--s~~~~v~~~Al~aLanLA~~~~~~~aq 569 (660)
..|+|+..... .| .++...-+||.|...|. ..+|-|+-.|+.+|+.++.
T Consensus 178 F~LRn~g~EeaI~al~~~l~~~SalfrhEvAfVfGQl~s~~ai~~L~k~L~d~~E~pMVRhEaAeALGaIa~-------- 249 (289)
T KOG0567|consen 178 FYLRNIGTEEAINALIDGLADDSALFRHEVAFVFGQLQSPAAIPSLIKVLLDETEHPMVRHEAAEALGAIAD-------- 249 (289)
T ss_pred hHhhccCcHHHHHHHHHhcccchHHHHHHHHHHHhhccchhhhHHHHHHHHhhhcchHHHHHHHHHHHhhcC--------
Confidence 45555422111 01 01112235666776665 4567788888888888774
Q ss_pred cchhhhHHHhhcChHHHHHHhhcCCCHHHHHHHHHHHHHh
Q 006114 570 GQRKGRSHLMEDSALEWLIANSKTNSASTRRHVELALCHL 609 (660)
Q Consensus 570 ~~~e~r~~Li~~G~v~~Lv~lL~s~d~~vr~~Aa~AL~nL 609 (660)
..+++.|...+.+.++-|+.-+..+|--+
T Consensus 250 -----------e~~~~vL~e~~~D~~~vv~esc~valdm~ 278 (289)
T KOG0567|consen 250 -----------EDCVEVLKEYLGDEERVVRESCEVALDML 278 (289)
T ss_pred -----------HHHHHHHHHHcCCcHHHHHHHHHHHHHHH
Confidence 34677888888888888888887777544
No 200
>KOG4151 consensus Myosin assembly protein/sexual cycle protein and related proteins [Posttranslational modification, protein turnover, chaperones; Cell cycle control, cell division, chromosome partitioning; General function prediction only]
Probab=95.17 E-value=0.19 Score=58.99 Aligned_cols=226 Identities=15% Similarity=0.063 Sum_probs=148.2
Q ss_pred cCchhHHHHHhCCCHHHHHHhhCCCCHHHHHHHHHHHH-HhhCCchhHHHHHHcCCHHHHHHHHccCCCHHHHHHHHHHH
Q 006114 395 GQRATIAKICDEVGLPKILQLLTSEDPDVQIHAVKVVA-NLAAEDINQEKIVEEGGLDALLLLLRTSQNTTILRVASGAI 473 (660)
Q Consensus 395 a~~~~~~~I~e~ggI~~LV~LL~s~d~~vr~~Aa~aL~-nLa~~~en~~~Ive~GgI~~Lv~LL~~s~d~~v~~~Aa~AL 473 (660)
......+..+..||...|+++.....+..+.++..+|. .+...- .+ ....++++..++..+....=.-.+..++
T Consensus 492 ~~K~~~~~~Ik~~~~~aLlrl~~~q~e~akl~~~~aL~~~i~f~~-~~----~~~v~~~~~s~~~~d~~~~en~E~L~al 566 (748)
T KOG4151|consen 492 KEKYERAKKIKPGGYEALLRLGQQQFEEAKLKWYHALAGKIDFPG-ER----SYEVVKPLDSALHNDEKGLENFEALEAL 566 (748)
T ss_pred hhHHhcCccccccHHHHHHHHHHHhchHHHHHHHHHHhhhcCCCC-Cc----hhhhhhhhcchhhhhHHHHHHHHHHHHh
Confidence 34455667889999999999998888888888888887 333311 11 1124666666664222111122377889
Q ss_pred HHhhcC-chhHHHHHhcCccHHHHHhhcCCCCHHHHHHHHHHHHHHhcChhHHHHHH-h-ccHHHHHHHHhcCCCHHHHH
Q 006114 474 ANLAMN-EMNQGLIMSRGGGQLLAKTASKTDDPQTLRMVAGALANLCGNEKLHTMLE-E-DGAIKALLAMVRSGNIDVIA 550 (660)
Q Consensus 474 ~nLA~~-~~n~~~Ive~g~I~~Ll~LL~~s~d~~v~~~Aa~aLanLa~~~~~r~~iv-~-~G~V~~Lv~lL~s~~~~v~~ 550 (660)
.||+.. ...+..|+..-+++.+-.++.. .+|..++.++..+.||..++..-...+ + ..+++.....+...+.....
T Consensus 567 tnLas~s~s~r~~i~ke~~~~~ie~~~~e-e~~~lqraa~e~~~NLl~~~~~~e~si~e~~~~l~~w~~~~e~~~E~~~l 645 (748)
T KOG4151|consen 567 TNLASISESDRQKILKEKALGKIEELMTE-ENPALQRAALESIINLLWSPLLYERSIVEYKDRLKLWNLNLEVADEKFEL 645 (748)
T ss_pred hcccCcchhhHHHHHHHhcchhhHHHhhc-ccHHHHHHHHHHHHHHHhhHHHHHHHhhccccCchHHHHHHHhhhhHHhh
Confidence 999876 5556668877667665555543 788999999999999997776655544 3 34666666666666666777
Q ss_pred HHHHHHHHhhccchhhhhhcchhhhHHHhhcChHHHHHHhhcCCCHHHHHHHHHHHHHhhc-CCccHHHHHhcCcHHHHH
Q 006114 551 QVARGLANFAKCESRAIVQGQRKGRSHLMEDSALEWLIANSKTNSASTRRHVELALCHLAQ-NEDNARDFISRGGAKELV 629 (660)
Q Consensus 551 ~Al~aLanLA~~~~~~~aq~~~e~r~~Li~~G~v~~Lv~lL~s~d~~vr~~Aa~AL~nLa~-~~e~~~~Ive~G~l~~Lv 629 (660)
.++++++.|+.-+....+ + ..-...+...++.++.+.++.++.......+|+.. ..+-...++....++.+.
T Consensus 646 A~a~a~a~I~sv~~n~c~------~-~~~~~~~~e~~~~~i~~~~~~~qhrgl~~~ln~~~~~~ei~~~~~~~~~~~~l~ 718 (748)
T KOG4151|consen 646 AGAGALAAITSVVENHCS------R-ILELLEWLEILVRAIQDEDDEIQHRGLVIILNLFEALFEIAEKIFETEVMELLS 718 (748)
T ss_pred hccccccchhhcchhhhh------h-HHHhhcchHHHHHhhcCchhhhhhhhhhhhhhHHHHHHHHHHHhccchHHHHHH
Confidence 777777756543321111 1 33345677888899999999999998888888644 235555666665555555
Q ss_pred HHHh
Q 006114 630 QISI 633 (660)
Q Consensus 630 ~lL~ 633 (660)
+.-.
T Consensus 719 ~~~~ 722 (748)
T KOG4151|consen 719 GLQK 722 (748)
T ss_pred HHHH
Confidence 5444
No 201
>KOG0978 consensus E3 ubiquitin ligase involved in syntaxin degradation [Posttranslational modification, protein turnover, chaperones]
Probab=95.14 E-value=9.4 Score=45.14 Aligned_cols=44 Identities=18% Similarity=0.070 Sum_probs=30.4
Q ss_pred HHHHhhhhHHHHHHHHHhhhhhhhhhhhhHHHHHHHHHHHhhhh
Q 006114 114 FLEKENAHLELEVEKILGELNHQKDQNNLKREKIVQLEISLKNS 157 (660)
Q Consensus 114 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 157 (660)
..-....-|..++..|..++++-+...+.++.++.+||..++-.
T Consensus 493 ~~~q~~k~L~~ek~~l~~~i~~l~~~~~~~~~~i~~leeq~~~l 536 (698)
T KOG0978|consen 493 KANQKHKLLREEKSKLEEQILTLKASVDKLELKIGKLEEQERGL 536 (698)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 34555666777777777777777777777777777776665544
No 202
>KOG1060 consensus Vesicle coat complex AP-3, beta subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=95.12 E-value=1.8 Score=50.99 Aligned_cols=269 Identities=18% Similarity=0.179 Sum_probs=141.9
Q ss_pred CCcccchhhhhhcccCCCccccccchhhhhhc-CchhHHHHHhCCCHHHHHHhhCCCCHHHHHHHHHHHHHhhC-CchhH
Q 006114 364 KPYTKDYISKGSSRFGAPMSLQKSNPSRELSG-QRATIAKICDEVGLPKILQLLTSEDPDVQIHAVKVVANLAA-EDINQ 441 (660)
Q Consensus 364 ~~~~~g~i~~l~~~L~~~~~~vr~~~~~~laa-~~~~~~~I~e~ggI~~LV~LL~s~d~~vr~~Aa~aL~nLa~-~~en~ 441 (660)
++..==+|.....+|.|+.+++|..++++++. .-+.+.-| .+-.+-.+.....+.||..|+.+|-.|-. +++..
T Consensus 103 pdLALLSIntfQk~L~DpN~LiRasALRvlSsIRvp~IaPI----~llAIk~~~~D~s~yVRk~AA~AIpKLYsLd~e~k 178 (968)
T KOG1060|consen 103 PDLALLSINTFQKALKDPNQLIRASALRVLSSIRVPMIAPI----MLLAIKKAVTDPSPYVRKTAAHAIPKLYSLDPEQK 178 (968)
T ss_pred CCceeeeHHHHHhhhcCCcHHHHHHHHHHHHhcchhhHHHH----HHHHHHHHhcCCcHHHHHHHHHhhHHHhcCChhhH
Confidence 34444567777889999999999999999554 22222211 11112234457789999999999998877 55555
Q ss_pred HHHHHcCCHHHHHHHHccCCCHHHHHHHHHHHHHhhcC--------------------chhHHHHHh-------cCc---
Q 006114 442 EKIVEEGGLDALLLLLRTSQNTTILRVASGAIANLAMN--------------------EMNQGLIMS-------RGG--- 491 (660)
Q Consensus 442 ~~Ive~GgI~~Lv~LL~~s~d~~v~~~Aa~AL~nLA~~--------------------~~n~~~Ive-------~g~--- 491 (660)
..+.+ .+-.+|. +.++-|...|+.|.-.+|-+ +..+..++. .+.
T Consensus 179 ~qL~e-----~I~~LLa-D~splVvgsAv~AF~evCPerldLIHknyrklC~ll~dvdeWgQvvlI~mL~RYAR~~l~~P 252 (968)
T KOG1060|consen 179 DQLEE-----VIKKLLA-DRSPLVVGSAVMAFEEVCPERLDLIHKNYRKLCRLLPDVDEWGQVVLINMLTRYARHQLPDP 252 (968)
T ss_pred HHHHH-----HHHHHhc-CCCCcchhHHHHHHHHhchhHHHHhhHHHHHHHhhccchhhhhHHHHHHHHHHHHHhcCCCc
Confidence 44333 2223333 55555555555544444322 011111100 000
Q ss_pred --------------------------------cHHHHH----hhcCCCCHHHHHHHHHHHHHHhcChhHHHHHHhccHHH
Q 006114 492 --------------------------------GQLLAK----TASKTDDPQTLRMVAGALANLCGNEKLHTMLEEDGAIK 535 (660)
Q Consensus 492 --------------------------------I~~Ll~----LL~~s~d~~v~~~Aa~aLanLa~~~~~r~~iv~~G~V~ 535 (660)
+..|+. +|. +.+|.|.-++|.+.+.++.... ..+.+.
T Consensus 253 ~~~~~~~e~n~~~~~~~~~~~~~~~P~~~d~D~~lLL~stkpLl~-S~n~sVVmA~aql~y~lAP~~~------~~~i~k 325 (968)
T KOG1060|consen 253 TVVDSSLEDNGRSCNLKDKYNEIRTPYVNDPDLKLLLQSTKPLLQ-SRNPSVVMAVAQLFYHLAPKNQ------VTKIAK 325 (968)
T ss_pred cccccccccCcccccccccccccCCCcccCccHHHHHHhccHHHh-cCCcHHHHHHHhHHHhhCCHHH------HHHHHH
Confidence 111221 221 2456677777788888774221 224577
Q ss_pred HHHHHhcCCCHHHHHHHHHHHHHhhccc-----------------hhhhhhcchhhhHHHhhcChHHHHH----HhhcCC
Q 006114 536 ALLAMVRSGNIDVIAQVARGLANFAKCE-----------------SRAIVQGQRKGRSHLMEDSALEWLI----ANSKTN 594 (660)
Q Consensus 536 ~Lv~lL~s~~~~v~~~Al~aLanLA~~~-----------------~~~~aq~~~e~r~~Li~~G~v~~Lv----~lL~s~ 594 (660)
+|+.+|++. +.++.-.+..|+.++.-. |..+.----+.-..++..+-++.++ ...++.
T Consensus 326 aLvrLLrs~-~~vqyvvL~nIa~~s~~~~~lF~P~lKsFfv~ssDp~~vk~lKleiLs~La~esni~~ILrE~q~YI~s~ 404 (968)
T KOG1060|consen 326 ALVRLLRSN-REVQYVVLQNIATISIKRPTLFEPHLKSFFVRSSDPTQVKILKLEILSNLANESNISEILRELQTYIKSS 404 (968)
T ss_pred HHHHHHhcC-CcchhhhHHHHHHHHhcchhhhhhhhhceEeecCCHHHHHHHHHHHHHHHhhhccHHHHHHHHHHHHhcC
Confidence 888888753 233333444444333222 1110000001222344444444444 345556
Q ss_pred CHHHHHHHHHHHHHhhcCCccHHHHHhcCcHHHHHHHHhcCChHHHHHHHH---HHHhcCcch
Q 006114 595 SASTRRHVELALCHLAQNEDNARDFISRGGAKELVQISIESSREDIRNLAK---KTMKSNPRL 654 (660)
Q Consensus 595 d~~vr~~Aa~AL~nLa~~~e~~~~Ive~G~l~~Lv~lL~s~s~~~ir~~A~---~~L~~~p~~ 654 (660)
|-.+-..|..||+.|+..... +...++..|+.++.+.+.-++-+.+. +++..+|.-
T Consensus 405 d~~faa~aV~AiGrCA~~~~s----v~~tCL~gLv~Llsshde~Vv~eaV~vIk~Llq~~p~~ 463 (968)
T KOG1060|consen 405 DRSFAAAAVKAIGRCASRIGS----VTDTCLNGLVQLLSSHDELVVAEAVVVIKRLLQKDPAE 463 (968)
T ss_pred chhHHHHHHHHHHHHHHhhCc----hhhHHHHHHHHHHhcccchhHHHHHHHHHHHHhhChHH
Confidence 666788888888888875533 33446677788887766555444333 555666653
No 203
>PF15070 GOLGA2L5: Putative golgin subfamily A member 2-like protein 5
Probab=95.00 E-value=10 Score=44.72 Aligned_cols=131 Identities=22% Similarity=0.239 Sum_probs=72.1
Q ss_pred hHHHHHHHHHHHhhHHHHHHh----hhhhh-hHHHHhhhhHHHHHHHHHhhhhhhhhhhhhHHHHHHHHHHHhhhhhhhh
Q 006114 87 KYEFEKQLRESQISYDESMRN----LVTRS-EFLEKENAHLELEVEKILGELNHQKDQNNLKREKIVQLEISLKNSKQQQ 161 (660)
Q Consensus 87 ~~~~e~~~~~~~~~~~~~~~~----~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 161 (660)
-.+||..|.++++.+.+...- -.... ..|..|-.+|..|+..|-..++-+-..+..++.....-|.+|.
T Consensus 52 V~eLE~sL~eLk~q~~~~~~~~~pa~pse~E~~Lq~E~~~L~kElE~L~~qlqaqv~~ne~Ls~L~~EqEerL~------ 125 (617)
T PF15070_consen 52 VQELERSLSELKNQMAEPPPPEPPAGPSEVEQQLQAEAEHLRKELESLEEQLQAQVENNEQLSRLNQEQEERLA------ 125 (617)
T ss_pred HHHHHHHHHHHHHhhcccCCccccccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH------
Confidence 456777777777665532100 00001 1455666677777777777776655444444443333333322
Q ss_pred hhhhhhHHHHHHhhHHHHHHHHH---HHHHHHHHHhhhhchHHHHHHHHHHHhhhhhhHHHHhhhhhHHHHHH
Q 006114 162 LDNSSYQKVLADTTQMYEKKITE---LIKQLEIEHARSEGAEEQVDTMKKLISDNQKSIEQYEMENSTYQKAL 231 (660)
Q Consensus 162 ~~~~~~~~~~~~~~~~~~~~~~~---l~~~l~~e~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~l 231 (660)
.+..+..+++....+ |.-.++.++.--..+-.++-.||.+|.++|..|-+.--+|-..+.+|
T Consensus 126 --------ELE~~le~~~e~~~D~~kLLe~lqsdk~t~SRAlsQN~eLK~QL~Elq~~Fv~ltne~~elt~~l 190 (617)
T PF15070_consen 126 --------ELEEELERLQEQQEDRQKLLEQLQSDKATASRALSQNRELKEQLAELQDAFVKLTNENMELTSAL 190 (617)
T ss_pred --------HHHHHHHHHHHHHHHHHHHHhhhcccchHHHHHHHhHHHHHHHHHHHHHHHHHHHHhhhHhhHHH
Confidence 222233333333333 33444555555566778889999999999988877666664444443
No 204
>PF05911 DUF869: Plant protein of unknown function (DUF869); InterPro: IPR008587 This family consists of a number of sequences found in plants. The function of this family is unknown.
Probab=95.00 E-value=1.9 Score=51.67 Aligned_cols=178 Identities=21% Similarity=0.225 Sum_probs=124.1
Q ss_pred HHHHHHHHHHHHHHHHhhhhchHHHHHHHHHHHhhhhhhHHHHhhhhh-HHHHHHhhHHHHHHHHHHHHhhhhhhhhhhh
Q 006114 178 YEKKITELIKQLEIEHARSEGAEEQVDTMKKLISDNQKSIEQYEMENS-TYQKALADTTQLYEKKIAELNKKLEDEHACF 256 (660)
Q Consensus 178 ~~~~~~~l~~~l~~e~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~-~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~ 256 (660)
.|-|+.-|+++|+.-..++..++|.+.+|--.|.++.+.+.+-.-|.- -...+++..|+.|+|--.+|..+|.+=..++
T Consensus 22 ae~e~~~lk~~l~~~~~~~~~~e~r~~hld~aLkec~~qlr~~ree~eq~i~~~~~~~s~e~e~~~~~le~~l~e~~~~l 101 (769)
T PF05911_consen 22 AEAEAASLKQQLEAATQQKLALEDRVSHLDGALKECMRQLRQVREEQEQKIHEAVAKKSKEWEKIKSELEAKLAELSKRL 101 (769)
T ss_pred HHHHHHHHHHHHHHHHHHhHHHHHHhhhhhHHHHHHHHHHHHhhHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHH
Confidence 345788899999999999999999999999999999975543333322 2456677777888777777777777666666
Q ss_pred hhhHHhHHHHHHHhhhhhccccchhHH-HHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHhhhhccHH-------HHHH
Q 006114 257 EGAVEQLDMVKKLLSDYQNSNQGQKEV-HELCVKLKETRQLHESAVYEVQTLKSEYKNLLEEKETMSDE-------LQAA 328 (660)
Q Consensus 257 ~~~~~~~~~~~~~~~~~~~~~~~~~e~-~~Lk~~Le~e~~~~e~~e~E~~~lks~l~~l~~~~~~~~ee-------l~~~ 328 (660)
..+.-.-..+.+-|...-+.+..-.+- ......+.......++.+.|...||-++.=+...-..+.+| +...
T Consensus 102 ~~~~~e~~~l~~~l~~~~~~i~~l~~~~~~~e~~~~~l~~~l~~~eken~~Lkye~~~~~keleir~~E~~~~~~~ae~a 181 (769)
T PF05911_consen 102 AESAAENSALSKALQEKEKLIAELSEEKSQAEAEIEDLMARLESTEKENSSLKYELHVLSKELEIRNEEREYSRRAAEAA 181 (769)
T ss_pred HHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHH
Confidence 666555555555555444444444433 44445555556666677777777777666666666666666 3555
Q ss_pred HHHHHHHHHHhhhhHHHHHHHHhhCCC
Q 006114 329 RQRLLVEEKQRKAIEYELVKLKKTAPE 355 (660)
Q Consensus 329 ~k~l~~e~~~rkkLe~E~~~l~~~l~~ 355 (660)
.|...+.+++--+|+.|..+|+.-+++
T Consensus 182 ~kqhle~vkkiakLEaEC~rLr~l~rk 208 (769)
T PF05911_consen 182 SKQHLESVKKIAKLEAECQRLRALVRK 208 (769)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 666677777777999999999888776
No 205
>KOG2611 consensus Neurochondrin/leucine-rich protein (Neurochondrin) [Function unknown]
Probab=94.99 E-value=0.32 Score=54.18 Aligned_cols=132 Identities=20% Similarity=0.189 Sum_probs=101.8
Q ss_pred HHHHhhCCCCHHHHHHHHHHHHHhhCC----chhHHHHHHcCCHHHHHHHHccC------CCHHHHHHHHHHHHHhhcCc
Q 006114 411 KILQLLTSEDPDVQIHAVKVVANLAAE----DINQEKIVEEGGLDALLLLLRTS------QNTTILRVASGAIANLAMNE 480 (660)
Q Consensus 411 ~LV~LL~s~d~~vr~~Aa~aL~nLa~~----~en~~~Ive~GgI~~Lv~LL~~s------~d~~v~~~Aa~AL~nLA~~~ 480 (660)
.+..++...+.+-|-.|+-.+..++.+ ..++..+.++-|.+.+-++|.+. +|...+..+...|+.+|..|
T Consensus 15 ~~~~L~~~k~D~e~fAaLllVTK~vK~~Di~a~~kk~vfeAVGf~Fl~rLl~tk~~p~dcpd~Vy~~i~itvLacFC~~p 94 (698)
T KOG2611|consen 15 DCLKLLKGKRDEERFAALLLVTKFVKNDDIVALNKKLVFEAVGFHFLDRLLRTKSGPGDCPDDVYLQISITVLACFCRVP 94 (698)
T ss_pred hHHHHhcccChHHHHHHHHHHHHHhcccchhhhhhhhHHHHhccchHHHHhhcCCCCCCCcHHHHHHHHHHHHHHHhCCh
Confidence 355666667777777888778788874 34577899999999999999753 33445566778888888887
Q ss_pred hhHHHHHhcCccHHHHHhhcCCCCHH------HHHHHHHHHHHHhcChhHHHHHHhccHHHHHHHHhc
Q 006114 481 MNQGLIMSRGGGQLLAKTASKTDDPQ------TLRMVAGALANLCGNEKLHTMLEEDGAIKALLAMVR 542 (660)
Q Consensus 481 ~n~~~Ive~g~I~~Ll~LL~~s~d~~------v~~~Aa~aLanLa~~~~~r~~iv~~G~V~~Lv~lL~ 542 (660)
+....=---+.||.|+.+++...|++ +...+-.+|..++..+.+...++..|+++.+..+-.
T Consensus 95 ElAsh~~~v~~IP~llev~~~~~d~d~e~~~~m~~d~Y~cL~~Va~~e~G~~~Lia~G~~~~~~Q~y~ 162 (698)
T KOG2611|consen 95 ELASHEEMVSRIPLLLEVMSKGIDTDYEDNLIMLEDCYECLYLVATAEAGLMTLIASGGLRVIAQMYE 162 (698)
T ss_pred hhccCHHHHHhhhHHHHHHHhcCCCchhhhHHHHHHHHHHHHHHhcCCchhHHHHhcCchHHHHHHHh
Confidence 76443333456899999998777776 777888999999999999999999999999987755
No 206
>PF15619 Lebercilin: Ciliary protein causing Leber congenital amaurosis disease
Probab=94.96 E-value=4.2 Score=40.83 Aligned_cols=92 Identities=22% Similarity=0.191 Sum_probs=49.0
Q ss_pred HHHHHHHHHHhhHHHHHHhhhhhhhHHHHhhhhHHHHHHHHHhhhhhhhhhhhh-------HHHHHHHHHHHhhhhhhhh
Q 006114 89 EFEKQLRESQISYDESMRNLVTRSEFLEKENAHLELEVEKILGELNHQKDQNNL-------KREKIVQLEISLKNSKQQQ 161 (660)
Q Consensus 89 ~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------~~~~~~~~~~~~~~~~~~~ 161 (660)
+|.+++.+.+..+++. ..||+-|..==.+-.+.|+.--|..+. +.+++.-|-..|+.++...
T Consensus 16 ~L~n~l~elq~~l~~l-----------~~ENk~Lk~lq~Rq~kAL~k~e~~e~~Lpqll~~h~eEvr~Lr~~LR~~q~~~ 84 (194)
T PF15619_consen 16 ELQNELAELQRKLQEL-----------RKENKTLKQLQKRQEKALQKYEDTEAELPQLLQRHNEEVRVLRERLRKSQEQE 84 (194)
T ss_pred HHHHHHHHHHHHHHHH-----------HHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4566666666665555 444444433333333333333333333 2344555555666666666
Q ss_pred hhhhhhHHHHHHhhHHHHHHHHHHHHHHHH
Q 006114 162 LDNSSYQKVLADTTQMYEKKITELIKQLEI 191 (660)
Q Consensus 162 ~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~ 191 (660)
-+.....++...++.....+++.|.+..++
T Consensus 85 r~~~~klk~~~~el~k~~~~l~~L~~L~~d 114 (194)
T PF15619_consen 85 RELERKLKDKDEELLKTKDELKHLKKLSED 114 (194)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHc
Confidence 666666666666666666666666665543
No 207
>PF12717 Cnd1: non-SMC mitotic condensation complex subunit 1
Probab=94.92 E-value=0.2 Score=49.24 Aligned_cols=91 Identities=15% Similarity=0.138 Sum_probs=73.3
Q ss_pred CHHHHHHHHHHHHHHh-cChhHHHHHHhccHHHHHHHHhcCCCHHHHHHHHHHHHHhhccchhhhhhcchhhhHHHhhcC
Q 006114 504 DPQTLRMVAGALANLC-GNEKLHTMLEEDGAIKALLAMVRSGNIDVIAQVARGLANFAKCESRAIVQGQRKGRSHLMEDS 582 (660)
Q Consensus 504 d~~v~~~Aa~aLanLa-~~~~~r~~iv~~G~V~~Lv~lL~s~~~~v~~~Al~aLanLA~~~~~~~aq~~~e~r~~Li~~G 582 (660)
||.++.++..+++-|| ..|..-. ..+|.+...|.++++.|+..|+.+|..|...+ .+.-.|
T Consensus 1 ~~~vR~n~i~~l~DL~~r~~~~ve-----~~~~~l~~~L~D~~~~VR~~al~~Ls~Li~~d-------------~ik~k~ 62 (178)
T PF12717_consen 1 DPSVRNNAIIALGDLCIRYPNLVE-----PYLPNLYKCLRDEDPLVRKTALLVLSHLILED-------------MIKVKG 62 (178)
T ss_pred CHHHHHHHHHHHHHHHHhCcHHHH-----hHHHHHHHHHCCCCHHHHHHHHHHHHHHHHcC-------------ceeehh
Confidence 5789999999999888 4443322 46788999999999999999999999998543 222344
Q ss_pred hH-HHHHHhhcCCCHHHHHHHHHHHHHhhcC
Q 006114 583 AL-EWLIANSKTNSASTRRHVELALCHLAQN 612 (660)
Q Consensus 583 ~v-~~Lv~lL~s~d~~vr~~Aa~AL~nLa~~ 612 (660)
.+ ..++.++.++++.|+..|..++..+...
T Consensus 63 ~l~~~~l~~l~D~~~~Ir~~A~~~~~e~~~~ 93 (178)
T PF12717_consen 63 QLFSRILKLLVDENPEIRSLARSFFSELLKK 93 (178)
T ss_pred hhhHHHHHHHcCCCHHHHHHHHHHHHHHHHh
Confidence 44 7888899999999999999999999775
No 208
>KOG1240 consensus Protein kinase containing WD40 repeats [Signal transduction mechanisms]
Probab=94.86 E-value=0.55 Score=57.38 Aligned_cols=193 Identities=19% Similarity=0.154 Sum_probs=123.7
Q ss_pred CCHHHHHHhhCCCCHHHHHHHHHHHHHhhC-----CchhHHHHHHcCCHHHHHHHHccCCCHHHHHHHHHHHHHhhcC--
Q 006114 407 VGLPKILQLLTSEDPDVQIHAVKVVANLAA-----EDINQEKIVEEGGLDALLLLLRTSQNTTILRVASGAIANLAMN-- 479 (660)
Q Consensus 407 ggI~~LV~LL~s~d~~vr~~Aa~aL~nLa~-----~~en~~~Ive~GgI~~Lv~LL~~s~d~~v~~~Aa~AL~nLA~~-- 479 (660)
..+|-+|.++..+...||..|+.+|..+.. .+.+...+.+. ..|.|-+++.++...-++..-|.+|+.||..
T Consensus 462 RVlPY~v~l~~Ds~a~Vra~Al~Tlt~~L~~Vr~~~~~daniF~eY-lfP~L~~l~~d~~~~~vRiayAsnla~LA~tA~ 540 (1431)
T KOG1240|consen 462 RVLPYFVHLLMDSEADVRATALETLTELLALVRDIPPSDANIFPEY-LFPHLNHLLNDSSAQIVRIAYASNLAQLAKTAY 540 (1431)
T ss_pred hhHHHHHHHhcCchHHHHHHHHHHHHHHHhhccCCCcccchhhHhh-hhhhhHhhhccCccceehhhHHhhHHHHHHHHH
Confidence 568999999999999999999999987654 24445556665 6888888887434444555555566665532
Q ss_pred -----------------chhHHHHH---h------cCcc-HHHHHhhcCCCCHHHHHHHHHHHHHHhc------------
Q 006114 480 -----------------EMNQGLIM---S------RGGG-QLLAKTASKTDDPQTLRMVAGALANLCG------------ 520 (660)
Q Consensus 480 -----------------~~n~~~Iv---e------~g~I-~~Ll~LL~~s~d~~v~~~Aa~aLanLa~------------ 520 (660)
+++..... + ..+| .....+|.+ ++|-|++.-+..|+.||.
T Consensus 541 rFle~~q~~~~~g~~n~~nset~~~~~~~~~~~~L~~~V~~~v~sLlsd-~~~~Vkr~Lle~i~~LC~FFGk~ksND~iL 619 (1431)
T KOG1240|consen 541 RFLELTQELRQAGMLNDPNSETAPEQNYNTELQALHHTVEQMVSSLLSD-SPPIVKRALLESIIPLCVFFGKEKSNDVIL 619 (1431)
T ss_pred HHHHHHHHHHhcccccCcccccccccccchHHHHHHHHHHHHHHHHHcC-CchHHHHHHHHHHHHHHHHhhhcccccchH
Confidence 11100000 0 0123 234456654 456677666677887772
Q ss_pred ----------ChhHHHHHH---------------hccHHHHHHHHhcCCCHHHHHHHHHHHHHhhccchhhhhhcchhhh
Q 006114 521 ----------NEKLHTMLE---------------EDGAIKALLAMVRSGNIDVIAQVARGLANFAKCESRAIVQGQRKGR 575 (660)
Q Consensus 521 ----------~~~~r~~iv---------------~~G~V~~Lv~lL~s~~~~v~~~Al~aLanLA~~~~~~~aq~~~e~r 575 (660)
+..+|..+. +.+.+|.|...+..+.+-|...|+.+|..|+..+- .+
T Consensus 620 shLiTfLNDkDw~LR~aFfdsI~gvsi~VG~rs~seyllPLl~Q~ltD~EE~Viv~aL~~ls~Lik~~l---------l~ 690 (1431)
T KOG1240|consen 620 SHLITFLNDKDWRLRGAFFDSIVGVSIFVGWRSVSEYLLPLLQQGLTDGEEAVIVSALGSLSILIKLGL---------LR 690 (1431)
T ss_pred HHHHHHhcCccHHHHHHHHhhccceEEEEeeeeHHHHHHHHHHHhccCcchhhHHHHHHHHHHHHHhcc---------cc
Confidence 133444443 34566777777888889999999999998885421 00
Q ss_pred HHHhhcChHHHHHHhhcCCCHHHHHHHHHHHHHhhc
Q 006114 576 SHLMEDSALEWLIANSKTNSASTRRHVELALCHLAQ 611 (660)
Q Consensus 576 ~~Li~~G~v~~Lv~lL~s~d~~vr~~Aa~AL~nLa~ 611 (660)
...--..+..+..+|.+++..+|..++..+...+.
T Consensus 691 -K~~v~~i~~~v~PlL~hPN~WIR~~~~~iI~~~~~ 725 (1431)
T KOG1240|consen 691 -KPAVKDILQDVLPLLCHPNLWIRRAVLGIIAAIAR 725 (1431)
T ss_pred -hHHHHHHHHhhhhheeCchHHHHHHHHHHHHHHHh
Confidence 01112244556678889999999999999987754
No 209
>PF06160 EzrA: Septation ring formation regulator, EzrA ; InterPro: IPR010379 During the bacterial cell cycle, the tubulin-like cell-division protein FtsZ polymerises into a ring structure that establishes the location of the nascent division site. EzrA modulates the frequency and position of FtsZ ring formation [].; GO: 0000921 septin ring assembly, 0005940 septin ring, 0016021 integral to membrane
Probab=94.80 E-value=11 Score=44.06 Aligned_cols=294 Identities=16% Similarity=0.252 Sum_probs=134.6
Q ss_pred hcchHHHHHHHHHHHHHhhHHHHHHhh-------------hhhh--hHHHHHHHHHHHHhhHHHHHhhHHHHHHHHHHHH
Q 006114 12 EFDYESLCRKLETQVDHLTAEIERKQK-------------LREN--DKCELEKLLRECQISYDEAKDNLVTQVELLTAKI 76 (660)
Q Consensus 12 ~~~~~~~~~~~~~~~~~~~~~~~~~~~-------------~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 76 (660)
-|.|..-+..||.+++.+-.....=.. |..+ +-..++..+..+=-=|.++...+-.|++.|.+-+
T Consensus 156 ~~~~G~a~~~Le~~L~~ie~~F~~f~~lt~~GD~~~A~eil~~l~~~~~~l~~~~e~IP~l~~~l~~~~P~ql~eL~~gy 235 (560)
T PF06160_consen 156 SFSYGPAIEELEKQLENIEEEFSEFEELTENGDYLEAREILEKLKEETDELEEIMEDIPKLYKELQKEFPDQLEELKEGY 235 (560)
T ss_pred hhhhchhHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHhHHHHHHHHHHH
Confidence 356666666777777666532221111 1111 1222333333343444555555666666665543
Q ss_pred H-HHHHhhhhchHHHHHHHHHHHhhHHHHHHhhhh-hhhHHHHhhhhHHHHHHHHHhhhhhhhhhhhhHHHHHHHHHHHh
Q 006114 77 E-MQQKLRENDKYEFEKQLRESQISYDESMRNLVT-RSEFLEKENAHLELEVEKILGELNHQKDQNNLKREKIVQLEISL 154 (660)
Q Consensus 77 ~-~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 154 (660)
. |.+.=-.-+...+++++...+.+..+.+..|.+ ..+.....+..+..+|+.|-..+.+.-.......+....+
T Consensus 236 ~~m~~~gy~l~~~~i~~~i~~i~~~l~~~~~~L~~l~l~~~~~~~~~i~~~Id~lYd~le~E~~Ak~~V~~~~~~l---- 311 (560)
T PF06160_consen 236 REMEEEGYYLEHLDIEEEIEQIEEQLEEALALLKNLELDEVEEENEEIEERIDQLYDILEKEVEAKKYVEKNLKEL---- 311 (560)
T ss_pred HHHHHCCCCCCCCCHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHH----
Confidence 2 222212223345666666666666666665554 5556677777777777777777666555554444333333
Q ss_pred hhhhhhhhhhhhhHHHHHHhhHHHHHHHHHHHHHH---HHHHhhhhchHHHHHHHHHHHhhhhhhHHHHhhhhhHHHHHH
Q 006114 155 KNSKQQQLDNSSYQKVLADTTQMYEKKITELIKQL---EIEHARSEGAEEQVDTMKKLISDNQKSIEQYEMENSTYQKAL 231 (660)
Q Consensus 155 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l---~~e~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~l 231 (660)
..+...+.+.++.+..++..+..-. +++.+....+++++..+..........+..+...-|.....+
T Consensus 312 ----------~~~l~~~~~~~~~l~~e~~~v~~sY~L~~~e~~~~~~l~~~l~~l~~~~~~~~~~i~~~~~~yS~i~~~l 381 (560)
T PF06160_consen 312 ----------YEYLEHAKEQNKELKEELERVSQSYTLNHNELEIVRELEKQLKELEKRYEDLEERIEEQQVPYSEIQEEL 381 (560)
T ss_pred ----------HHHHHHHHHHHHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCcCHHHHHHHH
Confidence 2223333344444444444444432 134444455555555555555555555554444444444333
Q ss_pred hhHHH---HHHHHHHHHhhhhhhhhhhhhhhHHhHHHHHHHhhhhhccccchh--HH-HHHHHHHHHHHHHHHhHHHHHH
Q 006114 232 ADTTQ---LYEKKIAELNKKLEDEHACFEGAVEQLDMVKKLLSDYQNSNQGQK--EV-HELCVKLKETRQLHESAVYEVQ 305 (660)
Q Consensus 232 ~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--e~-~~Lk~~Le~e~~~~e~~e~E~~ 305 (660)
.+..+ ..+++..++...|.+=+..-..|.++|..++.-|+.........- =+ ..+...+.........+...++
T Consensus 382 ~~~~~~l~~ie~~q~~~~~~l~~L~~dE~~Ar~~l~~~~~~l~~ikR~lek~nLPGlp~~y~~~~~~~~~~i~~l~~~L~ 461 (560)
T PF06160_consen 382 EEIEEQLEEIEEEQEEINESLQSLRKDEKEAREKLQKLKQKLREIKRRLEKSNLPGLPEDYLDYFFDVSDEIEELSDELN 461 (560)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCCCHHHHHHHHHHHHHHHHHHHHHh
Confidence 32211 122333333333333333333344444444444433222111100 00 2233344444444455554454
Q ss_pred HHHHHHHHHHHhhh
Q 006114 306 TLKSEYKNLLEEKE 319 (660)
Q Consensus 306 ~lks~l~~l~~~~~ 319 (660)
...-.+..+...-.
T Consensus 462 ~~pinm~~v~~~l~ 475 (560)
T PF06160_consen 462 QVPINMDEVNKQLE 475 (560)
T ss_pred cCCcCHHHHHHHHH
Confidence 44444444444333
No 210
>KOG1062 consensus Vesicle coat complex AP-1, gamma subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=94.78 E-value=1.2 Score=52.69 Aligned_cols=197 Identities=13% Similarity=0.122 Sum_probs=115.2
Q ss_pred CCCCHHHHHHHHHHHHHhhCCchhHHHHHHcCCHHHHHHHHccCCCHHHHHHHHHHHHHhhcC-chhHHHHHhcCccHHH
Q 006114 417 TSEDPDVQIHAVKVVANLAAEDINQEKIVEEGGLDALLLLLRTSQNTTILRVASGAIANLAMN-EMNQGLIMSRGGGQLL 495 (660)
Q Consensus 417 ~s~d~~vr~~Aa~aL~nLa~~~en~~~Ive~GgI~~Lv~LL~~s~d~~v~~~Aa~AL~nLA~~-~~n~~~Ive~g~I~~L 495 (660)
++.+..+.--|+.+|++++..+-.+. ..|.+..+|+ +.++-++..|+.|...+-.- |+....+ ++..
T Consensus 117 ~s~nq~vVglAL~alg~i~s~Emard------lapeVe~Ll~-~~~~~irKKA~Lca~r~irK~P~l~e~f-----~~~~ 184 (866)
T KOG1062|consen 117 NSSNQYVVGLALCALGNICSPEMARD------LAPEVERLLQ-HRDPYIRKKAALCAVRFIRKVPDLVEHF-----VIAF 184 (866)
T ss_pred cCCCeeehHHHHHHhhccCCHHHhHH------hhHHHHHHHh-CCCHHHHHHHHHHHHHHHHcCchHHHHh-----hHHH
Confidence 36777788888888888876543332 3666777887 68999999999888877544 5544443 4555
Q ss_pred HHhhcCCCCHHHHHHHHHHHHHHh-cChhHHHHHHhccHHHHHHHHhc----C-----------CCHHHHHHHHHHHHHh
Q 006114 496 AKTASKTDDPQTLRMVAGALANLC-GNEKLHTMLEEDGAIKALLAMVR----S-----------GNIDVIAQVARGLANF 559 (660)
Q Consensus 496 l~LL~~s~d~~v~~~Aa~aLanLa-~~~~~r~~iv~~G~V~~Lv~lL~----s-----------~~~~v~~~Al~aLanL 559 (660)
..+|.+ .++.|...+...+..+| .+++.-..+.+ .++.++..|+ + ++|-++..+++.|+-|
T Consensus 185 ~~lL~e-k~hGVL~~~l~l~~e~c~~~~~~l~~fr~--l~~~lV~iLk~l~~~~yspeydv~gi~dPFLQi~iLrlLriL 261 (866)
T KOG1062|consen 185 RKLLCE-KHHGVLIAGLHLITELCKISPDALSYFRD--LVPSLVKILKQLTNSGYSPEYDVHGISDPFLQIRILRLLRIL 261 (866)
T ss_pred HHHHhh-cCCceeeeHHHHHHHHHhcCHHHHHHHHH--HHHHHHHHHHHHhcCCCCCccCccCCCchHHHHHHHHHHHHh
Confidence 566654 56778877777777777 44554444444 5555555543 1 3566777777777777
Q ss_pred hccchhhh-------hhc-------chhhhHHHhhcChHHHHHHhhcCCCHHHHHHHHHHHHHhhcCC-ccHHHHHhcCc
Q 006114 560 AKCESRAI-------VQG-------QRKGRSHLMEDSALEWLIANSKTNSASTRRHVELALCHLAQNE-DNARDFISRGG 624 (660)
Q Consensus 560 A~~~~~~~-------aq~-------~~e~r~~Li~~G~v~~Lv~lL~s~d~~vr~~Aa~AL~nLa~~~-e~~~~Ive~G~ 624 (660)
-..++++. ++. +..|...+. .+|..++.+ ..++.+|..|+-+|+.+-.+. .| ++.=+
T Consensus 262 Gq~d~daSd~M~DiLaqvatntdsskN~GnAILY--E~V~TI~~I--~~~~~LrvlainiLgkFL~n~d~N----irYva 333 (866)
T KOG1062|consen 262 GQNDADASDLMNDILAQVATNTDSSKNAGNAILY--ECVRTIMDI--RSNSGLRVLAINILGKFLLNRDNN----IRYVA 333 (866)
T ss_pred cCCCccHHHHHHHHHHHHHhcccccccchhHHHH--HHHHHHHhc--cCCchHHHHHHHHHHHHhcCCccc----eeeee
Confidence 66554321 110 011111111 112222211 245678888888888876655 33 22334
Q ss_pred HHHHHHHHhcCC
Q 006114 625 AKELVQISIESS 636 (660)
Q Consensus 625 l~~Lv~lL~s~s 636 (660)
+..|.+++....
T Consensus 334 Ln~L~r~V~~d~ 345 (866)
T KOG1062|consen 334 LNMLLRVVQQDP 345 (866)
T ss_pred hhhHHhhhcCCc
Confidence 555555555443
No 211
>PF05004 IFRD: Interferon-related developmental regulator (IFRD); InterPro: IPR007701 Interferon-related developmental regulator (IFRD1) is the human homologue of the Rattus norvegicus early response protein PC4 and its murine homologue TIS7 []. The exact function of IFRD1 is unknown but it has been shown that PC4 is necessary for muscle differentiation and that it might have a role in signal transduction. This entry also contains IFRD2 and its murine equivalent SKMc15, which are highly expressed soon after gastrulation and in the hepatic primordium, suggesting an involvement in early hematopoiesis [].
Probab=94.78 E-value=1.1 Score=48.30 Aligned_cols=149 Identities=21% Similarity=0.143 Sum_probs=85.7
Q ss_pred HHHHHHhhCCCCHHHHHHHHHHHHHhhCC---chhHHHHHHcCCHHHHHHHHccCC-CHHHHHHHHHHHHHhhcC----c
Q 006114 409 LPKILQLLTSEDPDVQIHAVKVVANLAAE---DINQEKIVEEGGLDALLLLLRTSQ-NTTILRVASGAIANLAMN----E 480 (660)
Q Consensus 409 I~~LV~LL~s~d~~vr~~Aa~aL~nLa~~---~en~~~Ive~GgI~~Lv~LL~~s~-d~~v~~~Aa~AL~nLA~~----~ 480 (660)
++.++..++.+...-+..|+.+++-++.. ......+.+. ..|.|...+.++. .+.++..++.||+-++.. +
T Consensus 88 ~~~~~k~lkkg~~~E~~lA~~~l~Ll~ltlg~g~~~~ei~~~-~~~~L~~~l~d~s~~~~~R~~~~~aLai~~fv~~~d~ 166 (309)
T PF05004_consen 88 LDALLKSLKKGKSEEQALAARALALLALTLGAGEDSEEIFEE-LKPVLKRILTDSSASPKARAACLEALAICTFVGGSDE 166 (309)
T ss_pred HHHHHHHhccCCHHHHHHHHHHHHHHhhhcCCCccHHHHHHH-HHHHHHHHHhCCccchHHHHHHHHHHHHHHHhhcCCh
Confidence 55566777776666666677777666553 2334455543 6888888887543 455666677677766542 2
Q ss_pred hhHHHHHhcCccHHHHHh--h---------cCCCCHHHHHHHHHHHHHHh-cChhHHHHHHhccHHHHHHHHhcCCCHHH
Q 006114 481 MNQGLIMSRGGGQLLAKT--A---------SKTDDPQTLRMVAGALANLC-GNEKLHTMLEEDGAIKALLAMVRSGNIDV 548 (660)
Q Consensus 481 ~n~~~Ive~g~I~~Ll~L--L---------~~s~d~~v~~~Aa~aLanLa-~~~~~r~~iv~~G~V~~Lv~lL~s~~~~v 548 (660)
+.-...+ ..+..++.. + ...+++.+...|+.+-+-|. ..|...-.-.-...+|.|+.+|.+++.+|
T Consensus 167 ~~~~~~~--~~le~if~~~~~~~~~~~~~~~~~~~~~l~~aAL~aW~lLlt~~~~~~~~~~~~~~~~~l~~lL~s~d~~V 244 (309)
T PF05004_consen 167 EETEELM--ESLESIFLLSILKSDGNAPVVAAEDDAALVAAALSAWALLLTTLPDSKLEDLLEEALPALSELLDSDDVDV 244 (309)
T ss_pred hHHHHHH--HHHHHHHHHHhcCcCCCcccccCCCccHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHhcCCCHHH
Confidence 2111111 112211111 1 11234566666663333332 33332112222457999999999999999
Q ss_pred HHHHHHHHHHhh
Q 006114 549 IAQVARGLANFA 560 (660)
Q Consensus 549 ~~~Al~aLanLA 560 (660)
+..|..+|+-|.
T Consensus 245 RiAAGEaiAll~ 256 (309)
T PF05004_consen 245 RIAAGEAIALLY 256 (309)
T ss_pred HHHHHHHHHHHH
Confidence 999999998775
No 212
>PF12755 Vac14_Fab1_bd: Vacuolar 14 Fab1-binding region
Probab=94.78 E-value=0.27 Score=43.78 Aligned_cols=62 Identities=18% Similarity=0.224 Sum_probs=50.2
Q ss_pred cHHHHHHHHhcCCCHHHHHHHHHHHHHhhccchhhhhhcchhhhHHHhh--cChHHHHHHhhcCCCHHHHHHHHH
Q 006114 532 GAIKALLAMVRSGNIDVIAQVARGLANFAKCESRAIVQGQRKGRSHLME--DSALEWLIANSKTNSASTRRHVEL 604 (660)
Q Consensus 532 G~V~~Lv~lL~s~~~~v~~~Al~aLanLA~~~~~~~aq~~~e~r~~Li~--~G~v~~Lv~lL~s~d~~vr~~Aa~ 604 (660)
-.+++++..+...++.|+..||.+|.|++.. .+..++. ..+++.|.+++.+.++.||..|..
T Consensus 27 ~Il~pVL~~~~D~d~rVRy~AcEaL~ni~k~-----------~~~~~l~~f~~IF~~L~kl~~D~d~~Vr~~a~~ 90 (97)
T PF12755_consen 27 EILPPVLKCFDDQDSRVRYYACEALYNISKV-----------ARGEILPYFNEIFDALCKLSADPDENVRSAAEL 90 (97)
T ss_pred HHHHHHHHHcCCCcHHHHHHHHHHHHHHHHH-----------HHHHHHHHHHHHHHHHHHHHcCCchhHHHHHHH
Confidence 5788999999999999999999999999943 3334443 567788889999999999987643
No 213
>PF05557 MAD: Mitotic checkpoint protein; InterPro: IPR008672 This family consists of several eukaryotic mitotic checkpoint (Mitotic arrest deficient or MAD) proteins. The mitotic spindle checkpoint monitors proper attachment of the bipolar spindle to the kinetochores of aligned sister chromatids and causes a cell cycle arrest in prometaphase when failures occur. Multiple components of the mitotic spindle checkpoint have been identified in Saccharomyces cerevisiae and higher eukaryotes. In Saccharomyces cerevisiae, the existence of a Mad1-dependent complex containing Mad2, Mad3, Bub3 and Cdc20 has been demonstrated [].; PDB: 1GO4_F 4DZO_A.
Probab=94.70 E-value=0.0086 Score=71.41 Aligned_cols=209 Identities=22% Similarity=0.244 Sum_probs=0.0
Q ss_pred hHHHHHHhhhhhhhHHHHhhhhHHHHHHHHHhhhhhhhhhhhhHHHHHHHHHHHhhhhhhhhhhhhhhHHHHHHhhHHHH
Q 006114 100 SYDESMRNLVTRSEFLEKENAHLELEVEKILGELNHQKDQNNLKREKIVQLEISLKNSKQQQLDNSSYQKVLADTTQMYE 179 (660)
Q Consensus 100 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 179 (660)
++.+.+..+..+...++.+...|+.++..+...++...........+++.|... +..-.+.....+.|...+..++
T Consensus 168 ~l~~~~~~l~~~~~~~e~~~~~l~~e~~~l~~~le~~~~~~~e~e~~~~~L~~~----q~~~~e~e~~i~~Le~el~~~~ 243 (722)
T PF05557_consen 168 SLKNELSELERQAENAESQIQSLESELEELKEQLEELQSELQEAEQQLQELQAS----QASLAEAEQKIKELEAELKDQE 243 (722)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHhhHHHHHHHHHHHHHhHh
Confidence 333434444444445555566666666666666655554444444444444211 1111112222222222222221
Q ss_pred HHHHHHHHHHHHHHhhhhchHHHHHHHHHHHhhhhhhHH---HHhhhhhHHHHHHhhHHHHHHHHHHHHhhhhhhhhhhh
Q 006114 180 KKITELIKQLEIEHARSEGAEEQVDTMKKLISDNQKSIE---QYEMENSTYQKALADTTQLYEKKIAELNKKLEDEHACF 256 (660)
Q Consensus 180 ~~~~~l~~~l~~e~~~~~~~~~~~~~l~~~l~~~~~~~~---~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~ 256 (660)
. ...+.+.+..+......++.++..+...+..+.+... =.+-+|.+++..|.. ....+.+++++ ....
T Consensus 244 ~-~~~i~k~l~~ql~~i~~LE~en~~l~~Elk~Lr~~~~n~elLeEe~~sLq~kl~~-~E~~~~el~~l-------q~e~ 314 (722)
T PF05557_consen 244 S-DAEINKELKEQLAHIRELEKENRRLREELKHLRQSQENVELLEEEKRSLQRKLER-LEELEEELAEL-------QLEN 314 (722)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred h-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHH-HHHHHHHHHHH-------HHHH
Confidence 1 1234444445555555556555555555444442221 122334444444331 11222223322 2233
Q ss_pred hhhHHhHHHHHHHhhhhhccccchhHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHhhhhccHH
Q 006114 257 EGAVEQLDMVKKLLSDYQNSNQGQKEVHELCVKLKETRQLHESAVYEVQTLKSEYKNLLEEKETMSDE 324 (660)
Q Consensus 257 ~~~~~~~~~~~~~~~~~~~~~~~~~e~~~Lk~~Le~e~~~~e~~e~E~~~lks~l~~l~~~~~~~~ee 324 (660)
..+++++.....++.+.-..+.+.+. +...|.........+.+++..+++++.++...-+.+..+
T Consensus 315 ~~Le~el~sW~sl~~~~~~~~~sPe~---l~~~l~~lq~~~~~L~ek~g~~~~~~~~l~~~~~~Le~e 379 (722)
T PF05557_consen 315 EKLEDELNSWESLLQDIGLEFDSPED---LARALVQLQQENASLTEKLGSLQSELRELEEEIQELEQE 379 (722)
T ss_dssp --------------------------------------------------------------------
T ss_pred HHHHHHHHHHHHHHhcCCCCCCCHHH---HHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHH
Confidence 34445555555555553223333333 333344444444444555555555555444433333333
No 214
>KOG1062 consensus Vesicle coat complex AP-1, gamma subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=94.66 E-value=1.5 Score=51.76 Aligned_cols=232 Identities=15% Similarity=0.121 Sum_probs=115.1
Q ss_pred CCHHHHHHhhCCCCHHHHHHHHHHHHHhhC-CchhHHHH--------HH--c----CCHHHHHHHHccCCCH-----HHH
Q 006114 407 VGLPKILQLLTSEDPDVQIHAVKVVANLAA-EDINQEKI--------VE--E----GGLDALLLLLRTSQNT-----TIL 466 (660)
Q Consensus 407 ggI~~LV~LL~s~d~~vr~~Aa~aL~nLa~-~~en~~~I--------ve--~----GgI~~Lv~LL~~s~d~-----~v~ 466 (660)
...|.+..+|++.++.+|..|+-+...+.. .|+.-..+ .+ . +|+..+..++..+++. .+.
T Consensus 142 dlapeVe~Ll~~~~~~irKKA~Lca~r~irK~P~l~e~f~~~~~~lL~ek~hGVL~~~l~l~~e~c~~~~~~l~~fr~l~ 221 (866)
T KOG1062|consen 142 DLAPEVERLLQHRDPYIRKKAALCAVRFIRKVPDLVEHFVIAFRKLLCEKHHGVLIAGLHLITELCKISPDALSYFRDLV 221 (866)
T ss_pred HhhHHHHHHHhCCCHHHHHHHHHHHHHHHHcCchHHHHhhHHHHHHHhhcCCceeeeHHHHHHHHHhcCHHHHHHHHHHH
Confidence 345667788888888888888877776555 44433333 22 1 3466666666543321 234
Q ss_pred HHHHHHHHHhhcC---chh-----HHHHHhcCccHHHHHhhcCCCCHHHHHHHHHHHHHHhcChhHHHHHHhccHHHHHH
Q 006114 467 RVASGAIANLAMN---EMN-----QGLIMSRGGGQLLAKTASKTDDPQTLRMVAGALANLCGNEKLHTMLEEDGAIKALL 538 (660)
Q Consensus 467 ~~Aa~AL~nLA~~---~~n-----~~~Ive~g~I~~Ll~LL~~s~d~~v~~~Aa~aLanLa~~~~~r~~iv~~G~V~~Lv 538 (660)
..-...|.++... |+. ...+.... |-.++++|.. .|++.-..-.-.|+.++.+.+.-.-+..+=....+.
T Consensus 222 ~~lV~iLk~l~~~~yspeydv~gi~dPFLQi~-iLrlLriLGq-~d~daSd~M~DiLaqvatntdsskN~GnAILYE~V~ 299 (866)
T KOG1062|consen 222 PSLVKILKQLTNSGYSPEYDVHGISDPFLQIR-ILRLLRILGQ-NDADASDLMNDILAQVATNTDSSKNAGNAILYECVR 299 (866)
T ss_pred HHHHHHHHHHhcCCCCCccCccCCCchHHHHH-HHHHHHHhcC-CCccHHHHHHHHHHHHHhcccccccchhHHHHHHHH
Confidence 4455566666543 221 11111111 1223444532 566666666666666663222111111110111111
Q ss_pred HHhc-CCCHHHHHHHHHHHHHhhccchhhhhh-c-chhhhHHHhhcChH----HHHHHhhcCCCHHHHHHHHHHHHHhhc
Q 006114 539 AMVR-SGNIDVIAQVARGLANFAKCESRAIVQ-G-QRKGRSHLMEDSAL----EWLIANSKTNSASTRRHVELALCHLAQ 611 (660)
Q Consensus 539 ~lL~-s~~~~v~~~Al~aLanLA~~~~~~~aq-~-~~e~r~~Li~~G~v----~~Lv~lL~s~d~~vr~~Aa~AL~nLa~ 611 (660)
.++. .+++..+..|+.+|+.|-......+.- + ..-.|..-.+..++ ..++.+|++.|+.+++.|...+..|.-
T Consensus 300 TI~~I~~~~~LrvlainiLgkFL~n~d~NirYvaLn~L~r~V~~d~~avqrHr~tIleCL~DpD~SIkrralELs~~lvn 379 (866)
T KOG1062|consen 300 TIMDIRSNSGLRVLAINILGKFLLNRDNNIRYVALNMLLRVVQQDPTAVQRHRSTILECLKDPDVSIKRRALELSYALVN 379 (866)
T ss_pred HHHhccCCchHHHHHHHHHHHHhcCCccceeeeehhhHHhhhcCCcHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHhc
Confidence 2222 345555666666666555433221100 0 00011111122222 356788999999999999988888765
Q ss_pred CCccHHHHHhcCcHHHHHHHHhcCChHHHHHHHHH
Q 006114 612 NEDNARDFISRGGAKELVQISIESSREDIRNLAKK 646 (660)
Q Consensus 612 ~~e~~~~Ive~G~l~~Lv~lL~s~s~~~ir~~A~~ 646 (660)
.+.. .. .+..|+.++.+.+.+..-..|.+
T Consensus 380 ~~Nv-~~-----mv~eLl~fL~~~d~~~k~~~as~ 408 (866)
T KOG1062|consen 380 ESNV-RV-----MVKELLEFLESSDEDFKADIASK 408 (866)
T ss_pred cccH-HH-----HHHHHHHHHHhccHHHHHHHHHH
Confidence 5433 33 34567777777654444444443
No 215
>KOG1824 consensus TATA-binding protein-interacting protein [General function prediction only]
Probab=94.66 E-value=0.73 Score=55.11 Aligned_cols=202 Identities=17% Similarity=0.130 Sum_probs=108.5
Q ss_pred HHHHHHhhCC--CCHHHHHHHHHHHHHhhCCchhHHHHHHcCCHHHHHHHHccCCCHHHHHHHHHHHHHhhcC--chh--
Q 006114 409 LPKILQLLTS--EDPDVQIHAVKVVANLAAEDINQEKIVEEGGLDALLLLLRTSQNTTILRVASGAIANLAMN--EMN-- 482 (660)
Q Consensus 409 I~~LV~LL~s--~d~~vr~~Aa~aL~nLa~~~en~~~Ive~GgI~~Lv~LL~~s~d~~v~~~Aa~AL~nLA~~--~~n-- 482 (660)
+..|+.-+.+ .+..++..|.-.|+.+...... -...+.-..++..++ +++.+|+..|+.||++++.+ +..
T Consensus 819 a~kl~~~~~s~~s~~~ikvfa~LslGElgr~~~~---s~~~e~~~~iieaf~-sp~edvksAAs~ALGsl~vgnl~~yLp 894 (1233)
T KOG1824|consen 819 ATKLIQDLQSPKSSDSIKVFALLSLGELGRRKDL---SPQNELKDTIIEAFN-SPSEDVKSAASYALGSLAVGNLPKYLP 894 (1233)
T ss_pred HHHHHHHHhCCCCchhHHHHHHhhhhhhccCCCC---CcchhhHHHHHHHcC-CChHHHHHHHHHHhhhhhcCchHhHHH
Confidence 4445533333 3567777888888887763211 001111225677786 89999999999999999875 332
Q ss_pred --HHHHHhc------------------------CccHHHHHhhcCC---CCHHHHHHHHHHHHHHhcChhHHHHHHhccH
Q 006114 483 --QGLIMSR------------------------GGGQLLAKTASKT---DDPQTLRMVAGALANLCGNEKLHTMLEEDGA 533 (660)
Q Consensus 483 --~~~Ive~------------------------g~I~~Ll~LL~~s---~d~~v~~~Aa~aLanLa~~~~~r~~iv~~G~ 533 (660)
...|... ..++.+|.+|... ....++-.++.||+.|+..+. ...
T Consensus 895 fil~qi~sqpk~QyLLLhSlkevi~~~svd~~~~~v~~IW~lL~k~cE~~eegtR~vvAECLGkL~l~ep-------esL 967 (1233)
T KOG1824|consen 895 FILEQIESQPKRQYLLLHSLKEVIVSASVDGLKPYVEKIWALLFKHCECAEEGTRNVVAECLGKLVLIEP-------ESL 967 (1233)
T ss_pred HHHHHHhcchHhHHHHHHHHHHHHHHhccchhhhhHHHHHHHHHHhcccchhhhHHHHHHHhhhHHhCCh-------HHH
Confidence 2222111 1122233332210 111223333334444431110 134
Q ss_pred HHHHHHHhcCCCHHHHHHHHHHHHHhhccchhhhhhcchhhhHHHhhcChHHHHHHhhcCCCHHHHHHHHHHHHHhhcCC
Q 006114 534 IKALLAMVRSGNIDVIAQVARGLANFAKCESRAIVQGQRKGRSHLMEDSALEWLIANSKTNSASTRRHVELALCHLAQNE 613 (660)
Q Consensus 534 V~~Lv~lL~s~~~~v~~~Al~aLanLA~~~~~~~aq~~~e~r~~Li~~G~v~~Lv~lL~s~d~~vr~~Aa~AL~nLa~~~ 613 (660)
+|.|-..+.++.+..+..++.++-..-...++-+. .+....+...+.++.++|..||+.|..++...+.+.
T Consensus 968 lpkL~~~~~S~a~~~rs~vvsavKfsisd~p~~id---------~~lk~~ig~fl~~~~dpDl~VrrvaLvv~nSaahNK 1038 (1233)
T KOG1824|consen 968 LPKLKLLLRSEASNTRSSVVSAVKFSISDQPQPID---------PLLKQQIGDFLKLLRDPDLEVRRVALVVLNSAAHNK 1038 (1233)
T ss_pred HHHHHHHhcCCCcchhhhhhheeeeeecCCCCccC---------HHHHHHHHHHHHHHhCCchhHHHHHHHHHHHHHccC
Confidence 56666666777777776666666544433332111 112334556677889999999999999988777655
Q ss_pred ccHHHHHhcCcHHHHHHHHhc
Q 006114 614 DNARDFISRGGAKELVQISIE 634 (660)
Q Consensus 614 e~~~~Ive~G~l~~Lv~lL~s 634 (660)
.. +++ |.+|.|+..+.+
T Consensus 1039 ps---lIr-DllpeLLp~Ly~ 1055 (1233)
T KOG1824|consen 1039 PS---LIR-DLLPELLPLLYS 1055 (1233)
T ss_pred Hh---HHH-HHHHHHHHHHHH
Confidence 32 222 344555555443
No 216
>PF05622 HOOK: HOOK protein; InterPro: IPR008636 This family consists of several HOOK1, 2 and 3 proteins from different eukaryotic organisms. The different members of the Homo sapiens gene family are HOOK1, HOOK2 and HOOK3. Different domains have been identified in the three Homo sapiens HOOK proteins, and it was demonstrated that the highly conserved NH2-domain mediates attachment to microtubules, whereas the central coiled-coil motif mediates homodimerisation and the more divergent C-terminal domains are involved in binding to specific organelles (organelle-binding domains). It has been demonstrated that endogenous HOOK3 binds to Golgi membranes [], whereas both HOOK1 and HOOK2 are localised to discrete but unidentified cellular structures. In mice the Hook1 gene is predominantly expressed in the testis. Hook1 function is necessary for the correct positioning of microtubular structures within the haploid germ cell. Disruption of Hook1 function in mice causes abnormal sperm head shape and fragile attachment of the flagellum to the sperm head [].; GO: 0008017 microtubule binding, 0000226 microtubule cytoskeleton organization, 0005737 cytoplasm; PDB: 1WIX_A.
Probab=94.65 E-value=0.0091 Score=71.13 Aligned_cols=197 Identities=22% Similarity=0.300 Sum_probs=0.0
Q ss_pred hhhhhhhHHHHhhhhHHHHHHHHHhhhhhhh----hhhhhHHHHHHHHHHHhhhhhhhhhhhhhhHHHHHHhhHHHHHHH
Q 006114 107 NLVTRSEFLEKENAHLELEVEKILGELNHQK----DQNNLKREKIVQLEISLKNSKQQQLDNSSYQKVLADTTQMYEKKI 182 (660)
Q Consensus 107 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 182 (660)
.|..+...|..|+.+|..|...+...+.+-. +.......+...|-..++..++.-.+......++......++++|
T Consensus 197 el~~~i~~L~~e~~~L~~e~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~ql~~L~~el~~~e~~~~d~~~~~e~le~ei 276 (713)
T PF05622_consen 197 ELEKQISDLQEEKESLQSENEELQERLSQLEGSSEEPSQHLSVELADLRAQLRRLREELERLEEQRDDLKIELEELEKEI 276 (713)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HHHHHHHHHHHhHHHhhhhhhhhhcccCCCCCCCCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444444555566666666655555443311 222222233333333333333322222222223334444555666
Q ss_pred HHHHHHH---HHHHhhhhchHHHHHHHHHHHhhhhhhHHHHhhhhhHHHHHHhhHHHHHHHHHHHHhh----------hh
Q 006114 183 TELIKQL---EIEHARSEGAEEQVDTMKKLISDNQKSIEQYEMENSTYQKALADTTQLYEKKIAELNK----------KL 249 (660)
Q Consensus 183 ~~l~~~l---~~e~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~----------~~ 249 (660)
.+|.+.. .........+.|+++.|+..-..+. +++.+...|.+.|.| ..-|.+++.+|.. .|
T Consensus 277 ~~L~q~~~eL~~~A~~a~~LrDElD~lR~~a~r~~----klE~~ve~YKkKLed-~~~lk~qvk~Lee~N~~l~e~~~~L 351 (713)
T PF05622_consen 277 DELRQENEELQAEAREARALRDELDELREKADRAD----KLENEVEKYKKKLED-LEDLKRQVKELEEDNAVLLETKAML 351 (713)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHH----HHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 6665443 3444667788999999998888887 455666888888886 4567777777766 34
Q ss_pred hhhhhhhhhhHHhHHHHHHHhhhhhccccchhHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHhhhhc
Q 006114 250 EDEHACFEGAVEQLDMVKKLLSDYQNSNQGQKEVHELCVKLKETRQLHESAVYEVQTLKSEYKNLLEEKETM 321 (660)
Q Consensus 250 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~Lk~~Le~e~~~~e~~e~E~~~lks~l~~l~~~~~~~ 321 (660)
|++..++.+...|+...+ .++.+|+..+.++.+..+.++.|+..|+..+..+......+
T Consensus 352 Eeel~~~~~~~~qle~~k-------------~qi~eLe~~l~~~~~~~~~l~~e~~~L~ek~~~l~~eke~l 410 (713)
T PF05622_consen 352 EEELKKARALKSQLEEYK-------------KQIQELEQKLSEESRRADKLEFENKQLEEKLEALEEEKERL 410 (713)
T ss_dssp ------------------------------------------------------------------------
T ss_pred HHHHHHhHHHHHHHHHHH-------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 555555555555554433 35667888888888888888888888888777665544433
No 217
>PRK04863 mukB cell division protein MukB; Provisional
Probab=94.58 E-value=21 Score=46.37 Aligned_cols=44 Identities=11% Similarity=0.011 Sum_probs=30.5
Q ss_pred HHHhhHHHHHHHHHHHHhhhhhhhhhhhhhhHHhHHHHHHHhhh
Q 006114 229 KALADTTQLYEKKIAELNKKLEDEHACFEGAVEQLDMVKKLLSD 272 (660)
Q Consensus 229 ~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 272 (660)
..|.+.-.-|+.+++++..++.+-...++.++..+....+-.+.
T Consensus 438 EeLe~~LenF~aklee~e~qL~elE~kL~~lea~leql~~~~~~ 481 (1486)
T PRK04863 438 DNAEDWLEEFQAKEQEATEELLSLEQKLSVAQAAHSQFEQAYQL 481 (1486)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45666667788888888888777777777776666665555444
No 218
>PF04078 Rcd1: Cell differentiation family, Rcd1-like ; InterPro: IPR007216 Rcd1 (Required cell differentiation 1) -like proteins are found among a wide range of organisms []. Rcd1 was initially identified as an essential factor in nitrogen starvation-invoked differentiation in fission yeast. This results largely from a defect in nitrogen starvation-invoked induction of ste11+, a key transcriptional factor gene required for the onset of sexual development. It is one of the most conserved proteins in eukaryotes, and its mammalian homologue is expressed in a variety of differentiating tissues [, ]. The mammalian Rcd1 is a novel transcriptional cofactor and is critical for retinoic acid-induced differentiation of F9 mouse teratocarcinoma cells, at least in part, via forming complexes with retinoic acid receptor and activation transcription factor-2 (ATF-2) []. Two of the members in this family have been characterised as being involved in regulation of Ste11 regulated sex genes [, ].; PDB: 2FV2_B.
Probab=94.56 E-value=0.89 Score=47.43 Aligned_cols=190 Identities=9% Similarity=0.039 Sum_probs=117.6
Q ss_pred CHHHHHHHHHHHHHhhcC-chhHHHHHh-cCccHHHHH-------hhcCCC--CH---HHHHHHHHHHHHHhcChhHHHH
Q 006114 462 NTTILRVASGAIANLAMN-EMNQGLIMS-RGGGQLLAK-------TASKTD--DP---QTLRMVAGALANLCGNEKLHTM 527 (660)
Q Consensus 462 d~~v~~~Aa~AL~nLA~~-~~n~~~Ive-~g~I~~Ll~-------LL~~s~--d~---~v~~~Aa~aLanLa~~~~~r~~ 527 (660)
+++.++.|..-|+.--.. |+....+-. .|.+..|+. .++ ++ ++ .-..+|...|-.+|.+|+.|..
T Consensus 8 ~~~~Re~Al~eLsk~r~~~~~La~~LW~s~G~i~~LLqEIisiYp~l~-~~~Lt~~~snRVcnaLaLlQ~vAshpetr~~ 86 (262)
T PF04078_consen 8 NPETRENALLELSKKRESFPDLAPLLWHSFGTIAALLQEIISIYPALS-PPNLTARQSNRVCNALALLQCVASHPETRMP 86 (262)
T ss_dssp SHHHHHHHHHHHHHTCCC-TTHHHHHHTSTTHHHHHHHHHHGGGGGTT-TT---HHHHHHHHHHHHHHHHHHH-TTTHHH
T ss_pred CcchHHHHHHHHHHhhhcccchhHHHHcCCChHHHHHHHHHHHcccCC-CcccCHHHHHHHHHHHHHHHHHHcChHHHHH
Confidence 566676666555544322 444444433 566666554 221 11 12 2233444555577899999999
Q ss_pred HHhccHHHHHHHHhcCCC-----HHHHHHHHHHHHHhhccchhhhhhcchhhhHHHhhcChHHHHHHhhcCCCHHHHHHH
Q 006114 528 LEEDGAIKALLAMVRSGN-----IDVIAQVARGLANFAKCESRAIVQGQRKGRSHLMEDSALEWLIANSKTNSASTRRHV 602 (660)
Q Consensus 528 iv~~G~V~~Lv~lL~s~~-----~~v~~~Al~aLanLA~~~~~~~aq~~~e~r~~Li~~G~v~~Lv~lL~s~d~~vr~~A 602 (660)
++++..+-.|..++...+ ..++...+++++.+...++ ++.-..+.....+|.+++.+..++.-.+..|
T Consensus 87 Fl~a~iplyLyPfL~tt~k~r~~E~LRLtsLGVIgaLvK~d~-------~evi~fLl~tEiiplcLr~me~GselSKtvA 159 (262)
T PF04078_consen 87 FLKAHIPLYLYPFLNTTSKTRPFEYLRLTSLGVIGALVKTDD-------PEVISFLLQTEIIPLCLRIMEFGSELSKTVA 159 (262)
T ss_dssp HHHTTGGGGGHHHHH----SHHHHHHHHHHHHHHHHHHTT---------HHHHHHHHCTTHHHHHHHHHHHS-HHHHHHH
T ss_pred HHHcCchhhehhhhhccccccccchhhHhHHHHHHHHHcCCc-------HHHHHHHHhhchHHHHHHHHHhccHHHHHHH
Confidence 999999988888887432 4578899999999997653 3455678899999999999999999999999
Q ss_pred HHHHHHhhcCCccHHHHHh--------cCcHHHHHHHH-hcCChHHHHHHHH--HHHhcCcchhhhhh
Q 006114 603 ELALCHLAQNEDNARDFIS--------RGGAKELVQIS-IESSREDIRNLAK--KTMKSNPRLQADTH 659 (660)
Q Consensus 603 a~AL~nLa~~~e~~~~Ive--------~G~l~~Lv~lL-~s~s~~~ir~~A~--~~L~~~p~~~~e~~ 659 (660)
+..+..+-.+......+.. ..++..++..+ ..+++.-++...+ --|..||..++-++
T Consensus 160 tfIlqKIL~dd~GL~yiC~t~eRf~av~~vL~~mV~~l~~~pS~RLLKhIIrCYlRLsdnprar~aL~ 227 (262)
T PF04078_consen 160 TFILQKILLDDVGLNYICQTAERFFAVAMVLNKMVEQLVKQPSPRLLKHIIRCYLRLSDNPRAREALR 227 (262)
T ss_dssp HHHHHHHHHSHHHHHHHTSSHHHHHHHHHHHHHHHHHHHHS--HHHHHHHHHHHHHHTTSTTHHHHHH
T ss_pred HHHHHHHHcchhHHHHHhcCHHHHHHHHHHHHHHHHHHccCCChhHHHHHHHHHHHHccCHHHHHHHH
Confidence 9999888665543333321 23444444433 4445544555544 34567776665544
No 219
>KOG1240 consensus Protein kinase containing WD40 repeats [Signal transduction mechanisms]
Probab=94.54 E-value=0.79 Score=56.10 Aligned_cols=213 Identities=12% Similarity=0.037 Sum_probs=128.4
Q ss_pred HHHHHHhhCC-CCHHHHHHHHHHHHHhhC--CchhHHHHHHcCCHHHHHHHHccCCCHHHHHHHHHHHHHhhcC----ch
Q 006114 409 LPKILQLLTS-EDPDVQIHAVKVVANLAA--EDINQEKIVEEGGLDALLLLLRTSQNTTILRVASGAIANLAMN----EM 481 (660)
Q Consensus 409 I~~LV~LL~s-~d~~vr~~Aa~aL~nLa~--~~en~~~Ive~GgI~~Lv~LL~~s~d~~v~~~Aa~AL~nLA~~----~~ 481 (660)
++-+...+++ .....+..|+..|..|+. +++++- .-.+|.++.++. ++++.|+..|..+|..+-.. |.
T Consensus 424 vs~lts~IR~lk~~~tK~~ALeLl~~lS~~i~de~~L----DRVlPY~v~l~~-Ds~a~Vra~Al~Tlt~~L~~Vr~~~~ 498 (1431)
T KOG1240|consen 424 VSVLTSCIRALKTIQTKLAALELLQELSTYIDDEVKL----DRVLPYFVHLLM-DSEADVRATALETLTELLALVRDIPP 498 (1431)
T ss_pred HHHHHHHHHhhhcchhHHHHHHHHHHHhhhcchHHHH----hhhHHHHHHHhc-CchHHHHHHHHHHHHHHHhhccCCCc
Confidence 4444455553 356778899999999988 344321 115899999998 78899999999888876433 44
Q ss_pred hHHHHHhcCccHHHHHhhcCCCCHHHHHHHHHHHHHHhcCh----hHHHHHHhc-------------------------c
Q 006114 482 NQGLIMSRGGGQLLAKTASKTDDPQTLRMVAGALANLCGNE----KLHTMLEED-------------------------G 532 (660)
Q Consensus 482 n~~~Ive~g~I~~Ll~LL~~s~d~~v~~~Aa~aLanLa~~~----~~r~~iv~~-------------------------G 532 (660)
.-..|.-...+|.|-.++.++...-|+..-|..|+.||... .....+... +
T Consensus 499 ~daniF~eYlfP~L~~l~~d~~~~~vRiayAsnla~LA~tA~rFle~~q~~~~~g~~n~~nset~~~~~~~~~~~~L~~~ 578 (1431)
T KOG1240|consen 499 SDANIFPEYLFPHLNHLLNDSSAQIVRIAYASNLAQLAKTAYRFLELTQELRQAGMLNDPNSETAPEQNYNTELQALHHT 578 (1431)
T ss_pred ccchhhHhhhhhhhHhhhccCccceehhhHHhhHHHHHHHHHHHHHHHHHHHhcccccCcccccccccccchHHHHHHHH
Confidence 44455556689999999877544456656566776666210 111111111 1
Q ss_pred HHHHHHHHhcCCCHHHHHHHHHHHHHhhccchhhhhhcchhhhHHHhhcChHHHHHHhhcCCCHHHHHHHHHHHHHhhcC
Q 006114 533 AIKALLAMVRSGNIDVIAQVARGLANFAKCESRAIVQGQRKGRSHLMEDSALEWLIANSKTNSASTRRHVELALCHLAQN 612 (660)
Q Consensus 533 ~V~~Lv~lL~s~~~~v~~~Al~aLanLA~~~~~~~aq~~~e~r~~Li~~G~v~~Lv~lL~s~d~~vr~~Aa~AL~nLa~~ 612 (660)
+-..++.++..+.+-|+..-+..|+-||..=. ..=.++=.++.|+..|++.|..+|.+-...+.-+|..
T Consensus 579 V~~~v~sLlsd~~~~Vkr~Lle~i~~LC~FFG-----------k~ksND~iLshLiTfLNDkDw~LR~aFfdsI~gvsi~ 647 (1431)
T KOG1240|consen 579 VEQMVSSLLSDSPPIVKRALLESIIPLCVFFG-----------KEKSNDVILSHLITFLNDKDWRLRGAFFDSIVGVSIF 647 (1431)
T ss_pred HHHHHHHHHcCCchHHHHHHHHHHHHHHHHhh-----------hcccccchHHHHHHHhcCccHHHHHHHHhhccceEEE
Confidence 12224444555667777777777888875310 0011234788999999999999987655555544332
Q ss_pred CccHHHHHhcCcHHHHHHHHhcCChHH
Q 006114 613 EDNARDFISRGGAKELVQISIESSRED 639 (660)
Q Consensus 613 ~e~~~~Ive~G~l~~Lv~lL~s~s~~~ 639 (660)
-.. .-++.+.+|.|..-+.++...+
T Consensus 648 VG~--rs~seyllPLl~Q~ltD~EE~V 672 (1431)
T KOG1240|consen 648 VGW--RSVSEYLLPLLQQGLTDGEEAV 672 (1431)
T ss_pred Eee--eeHHHHHHHHHHHhccCcchhh
Confidence 111 1134555666666665544443
No 220
>PF12717 Cnd1: non-SMC mitotic condensation complex subunit 1
Probab=94.54 E-value=1.8 Score=42.41 Aligned_cols=91 Identities=14% Similarity=0.121 Sum_probs=69.9
Q ss_pred CHHHHHHHHHHHHHhhcC-chhHHHHHhcCccHHHHHhhcCCCCHHHHHHHHHHHHHHhcChhHHHHHHhccH-HHHHHH
Q 006114 462 NTTILRVASGAIANLAMN-EMNQGLIMSRGGGQLLAKTASKTDDPQTLRMVAGALANLCGNEKLHTMLEEDGA-IKALLA 539 (660)
Q Consensus 462 d~~v~~~Aa~AL~nLA~~-~~n~~~Ive~g~I~~Ll~LL~~s~d~~v~~~Aa~aLanLa~~~~~r~~iv~~G~-V~~Lv~ 539 (660)
||.++.++..+++-|+.. |..-+ ..+|.+...|.+ ++|.|+..|+.+|..|...+-.+ -.|- +..++.
T Consensus 1 ~~~vR~n~i~~l~DL~~r~~~~ve-----~~~~~l~~~L~D-~~~~VR~~al~~Ls~Li~~d~ik----~k~~l~~~~l~ 70 (178)
T PF12717_consen 1 DPSVRNNAIIALGDLCIRYPNLVE-----PYLPNLYKCLRD-EDPLVRKTALLVLSHLILEDMIK----VKGQLFSRILK 70 (178)
T ss_pred CHHHHHHHHHHHHHHHHhCcHHHH-----hHHHHHHHHHCC-CCHHHHHHHHHHHHHHHHcCcee----ehhhhhHHHHH
Confidence 578899999999998764 44222 247888889975 89999999999999997532211 1233 377888
Q ss_pred HhcCCCHHHHHHHHHHHHHhhcc
Q 006114 540 MVRSGNIDVIAQVARGLANFAKC 562 (660)
Q Consensus 540 lL~s~~~~v~~~Al~aLanLA~~ 562 (660)
++..+++.|+..|..++..+...
T Consensus 71 ~l~D~~~~Ir~~A~~~~~e~~~~ 93 (178)
T PF12717_consen 71 LLVDENPEIRSLARSFFSELLKK 93 (178)
T ss_pred HHcCCCHHHHHHHHHHHHHHHHh
Confidence 88999999999999999998854
No 221
>PF14668 RICTOR_V: Rapamycin-insensitive companion of mTOR, domain 5
Probab=94.39 E-value=0.15 Score=43.03 Aligned_cols=67 Identities=18% Similarity=0.111 Sum_probs=60.2
Q ss_pred HHHHHHHHHHhhcCchhHHHHHhcCccHHHHHhhcCCCCHHHHHHHHHHHHHHhcChhHHHHHHhcc
Q 006114 466 LRVASGAIANLAMNEMNQGLIMSRGGGQLLAKTASKTDDPQTLRMVAGALANLCGNEKLHTMLEEDG 532 (660)
Q Consensus 466 ~~~Aa~AL~nLA~~~~n~~~Ive~g~I~~Ll~LL~~s~d~~v~~~Aa~aLanLa~~~~~r~~iv~~G 532 (660)
.+.|.+|+++++..+.....+.+.++++.++.+...++...++-.|..+|.-++.+..++..+-+.|
T Consensus 4 lKaaLWaighIgss~~G~~lL~~~~iv~~iv~~a~~s~v~siRGT~fy~Lglis~T~~G~~~L~~~g 70 (73)
T PF14668_consen 4 LKAALWAIGHIGSSPLGIQLLDESDIVEDIVKIAENSPVLSIRGTCFYVLGLISSTEEGAEILDELG 70 (73)
T ss_pred HHHHHHHHHhHhcChHHHHHHhhcCHHHHHHHHHHhCCccchHHHHHHHHHHHhCCHHHHHHHHHcC
Confidence 4679999999999999888888899999999999988888999999999999999999988887765
No 222
>COG5181 HSH155 U2 snRNP spliceosome subunit [RNA processing and modification]
Probab=94.36 E-value=0.49 Score=54.16 Aligned_cols=101 Identities=13% Similarity=0.125 Sum_probs=66.8
Q ss_pred HhhCCCCHHHHHHHHHHHHHhhCCchhH-HHHHHcCCHHHHHHHHccCCCHHHHHHHHHHHHHhhcC-ch---hHHHHHh
Q 006114 414 QLLTSEDPDVQIHAVKVVANLAAEDINQ-EKIVEEGGLDALLLLLRTSQNTTILRVASGAIANLAMN-EM---NQGLIMS 488 (660)
Q Consensus 414 ~LL~s~d~~vr~~Aa~aL~nLa~~~en~-~~Ive~GgI~~Lv~LL~~s~d~~v~~~Aa~AL~nLA~~-~~---n~~~Ive 488 (660)
.-|...++++.-..+.++..|......+ -+---.|.+|.|..+|+ +....|..+....++.||++ |+ .++.+.
T Consensus 653 E~lge~ypEvLgsil~Ai~~I~sv~~~~~mqpPi~~ilP~ltPILr-nkh~Kv~~nti~lvg~I~~~~peyi~~rEWMR- 730 (975)
T COG5181 653 ENLGEDYPEVLGSILKAICSIYSVHRFRSMQPPISGILPSLTPILR-NKHQKVVANTIALVGTICMNSPEYIGVREWMR- 730 (975)
T ss_pred HhcCcccHHHHHHHHHHHHHHhhhhcccccCCchhhccccccHhhh-hhhHHHhhhHHHHHHHHHhcCcccCCHHHHHH-
Confidence 4445677888877777777665522111 11112467999999998 67788888899999999987 43 233322
Q ss_pred cCccHHHHHhhcCCCCHHHHHHHHHHHHHHh
Q 006114 489 RGGGQLLAKTASKTDDPQTLRMVAGALANLC 519 (660)
Q Consensus 489 ~g~I~~Ll~LL~~s~d~~v~~~Aa~aLanLa 519 (660)
+---|+.+|. +.+.+++++|...+..++
T Consensus 731 --IcfeLvd~Lk-s~nKeiRR~A~~tfG~Is 758 (975)
T COG5181 731 --ICFELVDSLK-SWNKEIRRNATETFGCIS 758 (975)
T ss_pred --HHHHHHHHHH-HhhHHHHHhhhhhhhhHH
Confidence 2223566665 367789999998887776
No 223
>KOG0018 consensus Structural maintenance of chromosome protein 1 (sister chromatid cohesion complex Cohesin, subunit SMC1) [Cell cycle control, cell division, chromosome partitioning]
Probab=94.36 E-value=16 Score=44.88 Aligned_cols=167 Identities=18% Similarity=0.234 Sum_probs=83.8
Q ss_pred HHHHHHHHHHHHHhhhhchHHHHHHHHHHHhh-hhhh--HHHHhhhhhHHHHHHhhHHHHHHHHHHHHhhhhhhhhhhhh
Q 006114 181 KITELIKQLEIEHARSEGAEEQVDTMKKLISD-NQKS--IEQYEMENSTYQKALADTTQLYEKKIAELNKKLEDEHACFE 257 (660)
Q Consensus 181 ~~~~l~~~l~~e~~~~~~~~~~~~~l~~~l~~-~~~~--~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~ 257 (660)
+|.++...|++--+..+.++++.+..+...+. +=+. +.=.+-+|...+...|+-+..|+++|+-|.-||+=|.- .
T Consensus 726 ~i~~i~r~l~~~e~~~~~L~~~~n~ved~if~~f~~~igv~ir~Yee~~~~~~~a~k~~ef~~q~~~l~~~l~fe~~--~ 803 (1141)
T KOG0018|consen 726 EISEIKRKLQNREGEMKELEERMNKVEDRIFKGFCRRIGVRIREYEERELQQEFAKKRLEFENQKAKLENQLDFEKQ--K 803 (1141)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhcCeeeehHHHHHHHHHHHHHHHHHHHHHHHHhhhhhheec--c
Confidence 34445555555555555555555555544332 1110 00112345555788888899999999999888875544 3
Q ss_pred hhHHhHHHHHHHhhhhhccccchh--------HHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHhhhhccHHHHHHH
Q 006114 258 GAVEQLDMVKKLLSDYQNSNQGQK--------EVHELCVKLKETRQLHESAVYEVQTLKSEYKNLLEEKETMSDELQAAR 329 (660)
Q Consensus 258 ~~~~~~~~~~~~~~~~~~~~~~~~--------e~~~Lk~~Le~e~~~~e~~e~E~~~lks~l~~l~~~~~~~~eel~~~~ 329 (660)
.....+..+.+-++|-+....+-+ ++.++.++=.+.-+.++..+.|+...+-.+..+. .++..+.
T Consensus 804 d~~~~ve~~~~~v~~~~~~~~~~~~~e~~~~k~i~e~~~~e~k~k~~~~~~~~e~~e~~k~~~~~~-------~~~tkl~ 876 (1141)
T KOG0018|consen 804 DTQRRVERWERSVEDLEKEIEGLKKDEEAAEKIIAEIEELEKKNKSKFEKKEDEINEVKKILRRLV-------KELTKLD 876 (1141)
T ss_pred cHHHHHHHHHHHHHHHHHhHHhhHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHh
Confidence 333344444444444433322211 1222211111334444555544444444444433 3444444
Q ss_pred HHHHHHHHHhhhhHHHHHHHHhhCCCC
Q 006114 330 QRLLVEEKQRKAIEYELVKLKKTAPEH 356 (660)
Q Consensus 330 k~l~~e~~~rkkLe~E~~~l~~~l~~~ 356 (660)
+-+..-.++..++.+|.-.++..|.-.
T Consensus 877 ~~i~~~es~ie~~~~er~~lL~~ckl~ 903 (1141)
T KOG0018|consen 877 KEITSIESKIERKESERHNLLSKCKLE 903 (1141)
T ss_pred hhhhhhhhHHHHHHHHHHHHHHHhhhc
Confidence 444445555566777777777666443
No 224
>KOG1943 consensus Beta-tubulin folding cofactor D [Posttranslational modification, protein turnover, chaperones]
Probab=94.33 E-value=0.88 Score=55.14 Aligned_cols=227 Identities=16% Similarity=0.138 Sum_probs=135.3
Q ss_pred cccchhhhhhcccCCCccccccchhhh---hhcCchhHHHHHhCCCHHHHHHhhCC-CCHHHHHHHHHHHHHhhCCchhH
Q 006114 366 YTKDYISKGSSRFGAPMSLQKSNPSRE---LSGQRATIAKICDEVGLPKILQLLTS-EDPDVQIHAVKVVANLAAEDINQ 441 (660)
Q Consensus 366 ~~~g~i~~l~~~L~~~~~~vr~~~~~~---laa~~~~~~~I~e~ggI~~LV~LL~s-~d~~vr~~Aa~aL~nLa~~~en~ 441 (660)
..-+-+..+++++.+-+..+|-++++. ++...+ .......|..++.++.- ++...--.||-+|+.+|..--.-
T Consensus 338 ivE~vie~Lls~l~d~dt~VrWSaAKg~grvt~rlp---~~Lad~vi~svid~~~p~e~~~aWHgacLaLAELA~rGlLl 414 (1133)
T KOG1943|consen 338 IVEFVIEHLLSALSDTDTVVRWSAAKGLGRVTSRLP---PELADQVIGSVIDLFNPAEDDSAWHGACLALAELALRGLLL 414 (1133)
T ss_pred HHHHHHHHHHHhccCCcchhhHHHHHHHHHHHccCc---HHHHHHHHHHHHHhcCcCCchhHHHHHHHHHHHHHhcCCcc
Confidence 444678889999999999999998887 344333 22223455666666553 33444447888898887631111
Q ss_pred HHHHHcCCHHHHHHHHcc-------CCCHHHHHHHHHHHHHhhcC--chhHHHHHhcCccHHHHHhhcCCCCHHHHHHHH
Q 006114 442 EKIVEEGGLDALLLLLRT-------SQNTTILRVASGAIANLAMN--EMNQGLIMSRGGGQLLAKTASKTDDPQTLRMVA 512 (660)
Q Consensus 442 ~~Ive~GgI~~Lv~LL~~-------s~d~~v~~~Aa~AL~nLA~~--~~n~~~Ive~g~I~~Ll~LL~~s~d~~v~~~Aa 512 (660)
-... ...+|.++..|.- +....||..||.++|.++.. |...+.++.. .++.|+-..--.+...+++.|+
T Consensus 415 ps~l-~dVvplI~kaL~Yd~~~G~~s~G~~VRDaAcY~~WAf~Rays~~~l~p~l~~-L~s~LL~~AlFDrevncRRAAs 492 (1133)
T KOG1943|consen 415 PSLL-EDVVPLILKALHYDVRRGQHSVGQHVRDAACYVCWAFARAYSPSDLKPVLQS-LASALLIVALFDREVNCRRAAS 492 (1133)
T ss_pred hHHH-HHHHHHHHHHhhhhhhhcccccccchHHHHHHHHHHHHhcCChhhhhHHHHH-HHHHHHHHHhcCchhhHhHHHH
Confidence 1111 1135666655531 23456899999999999876 4333333332 3333333222235567788888
Q ss_pred HHHHHHhcC----hh----------------------HHHHHHh-ccHHHHHHHHh-----cCCCHHHHHHHHHHHHHhh
Q 006114 513 GALANLCGN----EK----------------------LHTMLEE-DGAIKALLAMV-----RSGNIDVIAQVARGLANFA 560 (660)
Q Consensus 513 ~aLanLa~~----~~----------------------~r~~iv~-~G~V~~Lv~lL-----~s~~~~v~~~Al~aLanLA 560 (660)
.|+....+. |. .+..+.. .|....+++-+ .+=++.++..++.+|..|+
T Consensus 493 AAlqE~VGR~~n~p~Gi~Lis~~dy~sV~~rsNcy~~l~~~ia~~~~y~~~~f~~L~t~Kv~HWd~~irelaa~aL~~Ls 572 (1133)
T KOG1943|consen 493 AALQENVGRQGNFPHGISLISTIDYFSVTNRSNCYLDLCVSIAEFSGYREPVFNHLLTKKVCHWDVKIRELAAYALHKLS 572 (1133)
T ss_pred HHHHHHhccCCCCCCchhhhhhcchhhhhhhhhHHHHHhHHHHhhhhHHHHHHHHHHhcccccccHHHHHHHHHHHHHHH
Confidence 888766522 11 1111111 12233333332 2347889999999999988
Q ss_pred ccchhhhhhcchhhhHHHhhcChHHHHHHhhcCCCHHHHHHHHHHHHHh
Q 006114 561 KCESRAIVQGQRKGRSHLMEDSALEWLIANSKTNSASTRRHVELALCHL 609 (660)
Q Consensus 561 ~~~~~~~aq~~~e~r~~Li~~G~v~~Lv~lL~s~d~~vr~~Aa~AL~nL 609 (660)
...|. ....+.+|+++....+.+...|..+..+.+.+
T Consensus 573 ~~~pk------------~~a~~~L~~lld~~ls~~~~~r~g~~la~~ev 609 (1133)
T KOG1943|consen 573 LTEPK------------YLADYVLPPLLDSTLSKDASMRHGVFLAAGEV 609 (1133)
T ss_pred HhhHH------------hhcccchhhhhhhhcCCChHHhhhhHHHHHHH
Confidence 65432 44568899999998888888777666665544
No 225
>PF08045 CDC14: Cell division control protein 14, SIN component; InterPro: IPR012535 Cdc14 is a component of the septation initiation network (SIN) and is required for the localisation and activity of Sid1. Sid1 is a protein kinase that localises asymmetrically to one spindle pole body (SPB) in anaphase disappears prior to cell separation [], [].
Probab=94.31 E-value=0.44 Score=49.72 Aligned_cols=81 Identities=16% Similarity=0.137 Sum_probs=69.1
Q ss_pred HHHHHHHHHHHHhhC-CchhHHHHHHcCCHHHHHHHHccCCCHHHHHHHHHHHHHhh-cCchhHHHHHhcCccHHHHHhh
Q 006114 422 DVQIHAVKVVANLAA-EDINQEKIVEEGGLDALLLLLRTSQNTTILRVASGAIANLA-MNEMNQGLIMSRGGGQLLAKTA 499 (660)
Q Consensus 422 ~vr~~Aa~aL~nLa~-~~en~~~Ive~GgI~~Lv~LL~~s~d~~v~~~Aa~AL~nLA-~~~~n~~~Ive~g~I~~Ll~LL 499 (660)
.....|+.+|..++- +|..+..+....++..|+.+|....++.++..+..+|..+. .+|.|...+-..+|+..++.++
T Consensus 106 ~li~~aL~vLQGl~LLHp~Sr~lF~r~~~m~lll~LL~~~~~~~i~~a~L~tLv~iLld~p~N~r~FE~~~Gl~~v~~ll 185 (257)
T PF08045_consen 106 SLIALALRVLQGLCLLHPPSRKLFHREQNMELLLDLLSPSNPPAIQSACLDTLVCILLDSPENQRDFEELNGLSTVCSLL 185 (257)
T ss_pred HHHHHHHHHHHHHHHcCchHHHHHhhhhhHHHHHHHhccCCCchHHHHHHHHHHHHHHcChHHHHHHHHhCCHHHHHHHH
Confidence 345668899999888 99999999999999999999975677888888887776654 5599999999999999999999
Q ss_pred cCC
Q 006114 500 SKT 502 (660)
Q Consensus 500 ~~s 502 (660)
++.
T Consensus 186 k~~ 188 (257)
T PF08045_consen 186 KSK 188 (257)
T ss_pred ccc
Confidence 864
No 226
>KOG0964 consensus Structural maintenance of chromosome protein 3 (sister chromatid cohesion complex Cohesin, subunit SMC3) [Cell cycle control, cell division, chromosome partitioning]
Probab=94.24 E-value=17 Score=44.12 Aligned_cols=268 Identities=19% Similarity=0.212 Sum_probs=121.0
Q ss_pred HHHHhhHHHHHHHHHHHHHHHHHHhhhhchHHHHHHHHHHHhhhhhhHHHHhhhhhHHHHHHhhHHHHHHHHHHHHhhhh
Q 006114 170 VLADTTQMYEKKITELIKQLEIEHARSEGAEEQVDTMKKLISDNQKSIEQYEMENSTYQKALADTTQLYEKKIAELNKKL 249 (660)
Q Consensus 170 ~~~~~~~~~~~~~~~l~~~l~~e~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~ 249 (660)
++-..+..++.++.-|+...|--.++...+-.+...|+-..+|+| ++...|..-..-.-.+-+.|+.||.+-...|
T Consensus 269 ~~~~~i~ele~~l~~l~~ekeq~~a~~t~~~k~kt~lel~~kdlq----~~i~~n~q~r~~~l~~l~~~~~ki~e~~~EL 344 (1200)
T KOG0964|consen 269 DLKCEIKELENKLTNLREEKEQLKARETKISKKKTKLELKIKDLQ----DQITGNEQQRNLALHVLQKVKDKIEEKKDEL 344 (1200)
T ss_pred HHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhHHHH----HHhhhhhhhhhhHHHHHHHHHHHHHHHHHHH
Confidence 333344444444444444444444444444455555555555555 2334444444444445555666665555555
Q ss_pred hhhhhhhhhhHHhHHHHHHHhhhh-h---------cc---ccc--------hhHHHHHHHHHHHHHHHHHhHHHHHHHHH
Q 006114 250 EDEHACFEGAVEQLDMVKKLLSDY-Q---------NS---NQG--------QKEVHELCVKLKETRQLHESAVYEVQTLK 308 (660)
Q Consensus 250 ~~~~~~~~~~~~~~~~~~~~~~~~-~---------~~---~~~--------~~e~~~Lk~~Le~e~~~~e~~e~E~~~lk 308 (660)
.-=--+|+...+.=++.++-|--- | +- +.+ -.|+..|.-.+.+...+...+..|+..+.
T Consensus 345 ~~I~Pky~~l~~ee~~~~~rl~~l~~~~~~l~~Kqgr~sqFssk~eRDkwir~ei~~l~~~i~~~ke~e~~lq~e~~~~e 424 (1200)
T KOG0964|consen 345 SKIEPKYNSLVDEEKRLKKRLAKLEQKQRDLLAKQGRYSQFSSKEERDKWIRSEIEKLKRGINDTKEQENILQKEIEDLE 424 (1200)
T ss_pred HHhhhHHHHHHhHHHHHHHHHHHHHHHHHHHHHhhccccccCcHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHH
Confidence 544444444433333322222111 1 10 111 23556666666666666667777777777
Q ss_pred HHHHHHHHhhhhccHHHHHHHHHHHHHHHHhhhhHHHHHHHHhhCCCCCCccccCCCcccchhhhhhcccCCCccccccc
Q 006114 309 SEYKNLLEEKETMSDELQAARQRLLVEEKQRKAIEYELVKLKKTAPEHDDDFEDKKPYTKDYISKGSSRFGAPMSLQKSN 388 (660)
Q Consensus 309 s~l~~l~~~~~~~~eel~~~~k~l~~e~~~rkkLe~E~~~l~~~l~~~~~~~~~~~~~~~g~i~~l~~~L~~~~~~vr~~ 388 (660)
++++.........+..+..++.++.+-...-..+..+.+.++..- ..+|-++. ..+..+.++-..+......+++.
T Consensus 425 ~~l~~~~e~i~~l~~si~e~~~r~~~~~~~~~~~k~~~del~~~R--k~lWREE~--~l~~~i~~~~~dl~~~~~~L~~~ 500 (1200)
T KOG0964|consen 425 SELKEKLEEIKELESSINETKGRMEEFDAENTELKRELDELQDKR--KELWREEK--KLRSLIANLEEDLSRAEKNLRAT 500 (1200)
T ss_pred HHHHHHHHHHHHHHhhHhhhhhHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHh
Confidence 777766655555555555555555544322233333333332211 11222221 12223333333322222222222
Q ss_pred hhhhhhcCchhHHHHH----hCCCHHHHHHhhCCCCH---HHHHHHHHHHHHhhC-CchhHHHHH
Q 006114 389 PSRELSGQRATIAKIC----DEVGLPKILQLLTSEDP---DVQIHAVKVVANLAA-EDINQEKIV 445 (660)
Q Consensus 389 ~~~~laa~~~~~~~I~----e~ggI~~LV~LL~s~d~---~vr~~Aa~aL~nLa~-~~en~~~Iv 445 (660)
..+.++..=.++.+|. -.|...+++.++..++. .|-..|.-.|.++.. +++....|.
T Consensus 501 ~~r~v~nGi~~v~~I~e~~k~ngv~G~v~eL~~v~~~f~tavEvtaGNsLF~iVVdndevATkIl 565 (1200)
T KOG0964|consen 501 MNRSVANGIDSVRKIKEELKPNGVFGTVYELIKVPNKFKTAVEVTAGNSLFNIVVDNDEVATKIL 565 (1200)
T ss_pred ccchhhhhhHHHHHHHHHhcccccceehhhhhcCCHHHHhHHhhhcccceEEEEecccHHHHHHH
Confidence 2222111111222332 35667788888887764 233334444555444 455555544
No 227
>KOG0567 consensus HEAT repeat-containing protein [General function prediction only]
Probab=94.20 E-value=1.2 Score=46.49 Aligned_cols=46 Identities=17% Similarity=0.119 Sum_probs=32.6
Q ss_pred cChHHHHHHhhcC--CCHHHHHHHHHHHHHhhcCCccHHHHHhcCcHHHHHHHHhcCC
Q 006114 581 DSALEWLIANSKT--NSASTRRHVELALCHLAQNEDNARDFISRGGAKELVQISIESS 636 (660)
Q Consensus 581 ~G~v~~Lv~lL~s--~d~~vr~~Aa~AL~nLa~~~e~~~~Ive~G~l~~Lv~lL~s~s 636 (660)
.-++|.|...|.+ .++.||..|+.||+.++... +++.|..++.+++
T Consensus 217 ~~ai~~L~k~L~d~~E~pMVRhEaAeALGaIa~e~----------~~~vL~e~~~D~~ 264 (289)
T KOG0567|consen 217 PAAIPSLIKVLLDETEHPMVRHEAAEALGAIADED----------CVEVLKEYLGDEE 264 (289)
T ss_pred hhhhHHHHHHHHhhhcchHHHHHHHHHHHhhcCHH----------HHHHHHHHcCCcH
Confidence 4468888888765 47899999999998876543 4555666665433
No 228
>PF14668 RICTOR_V: Rapamycin-insensitive companion of mTOR, domain 5
Probab=94.16 E-value=0.18 Score=42.55 Aligned_cols=67 Identities=9% Similarity=0.104 Sum_probs=60.4
Q ss_pred HHHHHHHHHHhhCCchhHHHHHHcCCHHHHHHHHccCCCHHHHHHHHHHHHHhhcCchhHHHHHhcC
Q 006114 424 QIHAVKVVANLAAEDINQEKIVEEGGLDALLLLLRTSQNTTILRVASGAIANLAMNEMNQGLIMSRG 490 (660)
Q Consensus 424 r~~Aa~aL~nLa~~~en~~~Ive~GgI~~Lv~LL~~s~d~~v~~~Aa~AL~nLA~~~~n~~~Ive~g 490 (660)
...|++++++++..+.....+.+.+.++.++.+...++...+|..|..+|+-++......+.+.+.|
T Consensus 4 lKaaLWaighIgss~~G~~lL~~~~iv~~iv~~a~~s~v~siRGT~fy~Lglis~T~~G~~~L~~~g 70 (73)
T PF14668_consen 4 LKAALWAIGHIGSSPLGIQLLDESDIVEDIVKIAENSPVLSIRGTCFYVLGLISSTEEGAEILDELG 70 (73)
T ss_pred HHHHHHHHHhHhcChHHHHHHhhcCHHHHHHHHHHhCCccchHHHHHHHHHHHhCCHHHHHHHHHcC
Confidence 4678999999999999988888889999999999988999999999999999999998888877665
No 229
>KOG0963 consensus Transcription factor/CCAAT displacement protein CDP1 [Transcription]
Probab=94.15 E-value=14 Score=42.77 Aligned_cols=205 Identities=21% Similarity=0.262 Sum_probs=106.1
Q ss_pred HhhhhhhhHHHHhhhhHHHHHHHHHhhhhhhhhhhhhHHHHHHHHHHHhhhhhhhhhhhhhhHHHHHHhhHHHH----HH
Q 006114 106 RNLVTRSEFLEKENAHLELEVEKILGELNHQKDQNNLKREKIVQLEISLKNSKQQQLDNSSYQKVLADTTQMYE----KK 181 (660)
Q Consensus 106 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~ 181 (660)
..+-++......||++|-.++.++.+++.+-+...... .-|+-++....+....-... ...-|-+.++ ..
T Consensus 110 ~~~l~k~~~~~~e~~~lk~~lee~~~el~~~k~qq~~v----~~l~e~l~k~~~~~~~~ie~--~a~~~e~~~~q~~~e~ 183 (629)
T KOG0963|consen 110 AELLNKQQKASEENEELKEELEEVNNELADLKTQQVTV----RNLKERLRKLEQLLEIFIEN--AANETEEKLEQEWAER 183 (629)
T ss_pred HHHhhhhhhhhhhHHHHHHHHHHHHHHHhhhhhhHHHH----HhHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHH
Confidence 34444444667788888888888888888777655442 23333333333332221110 1111112222 22
Q ss_pred HHHHHHHHHHHHhhhhchHHHHHHHHHHHhhhhhhHHHHhhhhhHHHHHHhhHHHHHHH----HHHH---Hhhhhhhhhh
Q 006114 182 ITELIKQLEIEHARSEGAEEQVDTMKKLISDNQKSIEQYEMENSTYQKALADTTQLYEK----KIAE---LNKKLEDEHA 254 (660)
Q Consensus 182 ~~~l~~~l~~e~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~----~~~~---~~~~~~~~~~ 254 (660)
.+.|+...+.-..+...+++.+..|...+.+.++ .+.+-...|.. |++| +-..|||-..
T Consensus 184 e~~L~~~~~~~~~q~~~le~ki~~lq~a~~~t~~--------------el~~~~s~~dee~~~k~aev~lim~eLe~aq~ 249 (629)
T KOG0963|consen 184 EAGLKDEEQNLQEQLEELEKKISSLQSAIEDTQN--------------ELFDLKSKYDEEVAAKAAEVSLIMTELEDAQQ 249 (629)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhh--------------HHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHH
Confidence 3344444444444555555555555555555553 23333333332 2333 3466777777
Q ss_pred hhhhhHHhHHHHHHHhhhhhcccc----------------chhHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHhh
Q 006114 255 CFEGAVEQLDMVKKLLSDYQNSNQ----------------GQKEVHELCVKLKETRQLHESAVYEVQTLKSEYKNLLEEK 318 (660)
Q Consensus 255 ~~~~~~~~~~~~~~~~~~~~~~~~----------------~~~e~~~Lk~~Le~e~~~~e~~e~E~~~lks~l~~l~~~~ 318 (660)
|...++..-..+...+...-.+.. -..+|..|-.+++ ++..+...|+...+.+++.+-..-
T Consensus 250 ri~~lE~e~e~L~~ql~~~N~~~~~~~~~~i~~~~~~L~~kd~~i~~L~~di~---~~~~S~~~e~e~~~~qI~~le~~l 326 (629)
T KOG0963|consen 250 RIVFLEREVEQLREQLAKANSSKKLAKIDDIDALGSVLNQKDSEIAQLSNDIE---RLEASLVEEREKHKAQISALEKEL 326 (629)
T ss_pred HHHHHHHHHHHHHHHHHhhhhhhhhccCCchHHHHHHHhHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 777777776666666654333322 2334444444443 455666667777777777665555
Q ss_pred hhccHHHHHHHHHHH
Q 006114 319 ETMSDELQAARQRLL 333 (660)
Q Consensus 319 ~~~~eel~~~~k~l~ 333 (660)
.+...++..+++.+.
T Consensus 327 ~~~~~~leel~~kL~ 341 (629)
T KOG0963|consen 327 KAKISELEELKEKLN 341 (629)
T ss_pred HHHHHHHHHHHHHHh
Confidence 555555555555443
No 230
>KOG2062 consensus 26S proteasome regulatory complex, subunit RPN2/PSMD1 [Posttranslational modification, protein turnover, chaperones]
Probab=94.08 E-value=0.31 Score=56.72 Aligned_cols=127 Identities=21% Similarity=0.175 Sum_probs=80.9
Q ss_pred CHHHHHHh-hCCCCHHHHHHHHHHHHHhhCCchhHHHHHHcCCHHHHHHHHccCCCHHHHHHHHHHHHHhhcCchhHHHH
Q 006114 408 GLPKILQL-LTSEDPDVQIHAVKVVANLAAEDINQEKIVEEGGLDALLLLLRTSQNTTILRVASGAIANLAMNEMNQGLI 486 (660)
Q Consensus 408 gI~~LV~L-L~s~d~~vr~~Aa~aL~nLa~~~en~~~Ive~GgI~~Lv~LL~~s~d~~v~~~Aa~AL~nLA~~~~n~~~I 486 (660)
+|..|+.. .+..+.+||+.|+-+|+.++..+.. .+|..+.+|..+.|+-||..|+.||+-.|.+..++..|
T Consensus 555 air~lLh~aVsD~nDDVrRaAVialGFVl~~dp~--------~~~s~V~lLses~N~HVRyGaA~ALGIaCAGtG~~eAi 626 (929)
T KOG2062|consen 555 AIRRLLHVAVSDVNDDVRRAAVIALGFVLFRDPE--------QLPSTVSLLSESYNPHVRYGAAMALGIACAGTGLKEAI 626 (929)
T ss_pred hHHHhhcccccccchHHHHHHHHHheeeEecChh--------hchHHHHHHhhhcChhhhhhHHHHHhhhhcCCCcHHHH
Confidence 45566654 4567889999999999887764322 36777888887889999999999999888876666554
Q ss_pred HhcCccHHHHHhhcCCCCHHHHHHHHHHHHHHh--cChhHHHHHHhccHHHHHHHHhcCCCHHHHHH
Q 006114 487 MSRGGGQLLAKTASKTDDPQTLRMVAGALANLC--GNEKLHTMLEEDGAIKALLAMVRSGNIDVIAQ 551 (660)
Q Consensus 487 ve~g~I~~Ll~LL~~s~d~~v~~~Aa~aLanLa--~~~~~r~~iv~~G~V~~Lv~lL~s~~~~v~~~ 551 (660)
..|-.+.++ +..-|+..|+-+++-+. .++..+... .|....+...+...+.+....
T Consensus 627 ------~lLepl~~D-~~~fVRQgAlIa~amIm~Q~t~~~~pkv--~~frk~l~kvI~dKhEd~~aK 684 (929)
T KOG2062|consen 627 ------NLLEPLTSD-PVDFVRQGALIALAMIMIQQTEQLCPKV--NGFRKQLEKVINDKHEDGMAK 684 (929)
T ss_pred ------HHHhhhhcC-hHHHHHHHHHHHHHHHHHhcccccCchH--HHHHHHHHHHhhhhhhHHHHH
Confidence 333334433 44467777776666554 333333222 134455666666666555433
No 231
>PF07926 TPR_MLP1_2: TPR/MLP1/MLP2-like protein; InterPro: IPR012929 This domain is found in a number of proteins, including TPR protein (P12270 from SWISSPROT) and yeast myosin-like proteins 1 (MLP1, Q02455 from SWISSPROT) and 2 (MLP2, P40457 from SWISSPROT). These proteins share a number of features; for example, they all have coiled-coil regions and all three are associated with nuclear pores [, , ]. TPR is thought to be a component of nuclear pore complex- attached intranuclear filaments [], and is implicated in nuclear protein import []. Moreover, its N-terminal region is involved in the activation of oncogenic kinases, possibly by mediating the dimerisation of kinase domains or by targeting these kinases to the nuclear pore complex []. MLP1 and MLP2 are involved in the process of telomere length regulation, where they are thought to interact with proteins such as Tel1p and modulate their activity []. ; GO: 0006606 protein import into nucleus, 0005643 nuclear pore
Probab=94.02 E-value=3.6 Score=38.56 Aligned_cols=33 Identities=18% Similarity=0.350 Sum_probs=27.0
Q ss_pred HhhHHHHHHHHHHHHHHHHHHhhhhchHHHHHH
Q 006114 173 DTTQMYEKKITELIKQLEIEHARSEGAEEQVDT 205 (660)
Q Consensus 173 ~~~~~~~~~~~~l~~~l~~e~~~~~~~~~~~~~ 205 (660)
....+|+++|.++...+++-..+|..+++++..
T Consensus 98 ~qk~~le~e~~~~~~r~~dL~~QN~lLh~QlE~ 130 (132)
T PF07926_consen 98 EQKEQLEKELSELEQRIEDLNEQNKLLHDQLES 130 (132)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 356788899999999998888888888888754
No 232
>PF05483 SCP-1: Synaptonemal complex protein 1 (SCP-1); InterPro: IPR008827 Synaptonemal complex protein 1 (SCP-1) is the major component of the transverse filaments of the synaptonemal complex. Synaptonemal complexes are structures that are formed between homologous chromosomes during meiotic prophase [].; GO: 0007130 synaptonemal complex assembly, 0000795 synaptonemal complex
Probab=93.98 E-value=16 Score=42.78 Aligned_cols=102 Identities=21% Similarity=0.307 Sum_probs=61.6
Q ss_pred hchHHHHHHHHHHHhhhhhhHHHHhhhhhHHHHHHh-hHHH--HHHHHHHHHhhhhhhhhhhhhhhHHh--------HHH
Q 006114 197 EGAEEQVDTMKKLISDNQKSIEQYEMENSTYQKALA-DTTQ--LYEKKIAELNKKLEDEHACFEGAVEQ--------LDM 265 (660)
Q Consensus 197 ~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~l~-~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~--------~~~ 265 (660)
+.++..++.|+.+..+.-+.|...+.+|-.+.|.++ ++.| .|+.||..|...+++-.-.++..-+- =-.
T Consensus 590 k~lenk~~~LrKqvEnk~K~ieeLqqeNk~LKKk~~aE~kq~~~~eikVn~L~~E~e~~kk~~eE~~~~~~keie~K~~~ 669 (786)
T PF05483_consen 590 KILENKCNNLRKQVENKNKNIEELQQENKALKKKITAESKQSNVYEIKVNKLQEELENLKKKHEEETDKYQKEIESKSIS 669 (786)
T ss_pred HHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHhhhh
Confidence 455666777888877777888888888888887664 3433 48888887766555443333322211 112
Q ss_pred HHHHhhhhhccccchhHHHHHHHHHHHHHHHHH
Q 006114 266 VKKLLSDYQNSNQGQKEVHELCVKLKETRQLHE 298 (660)
Q Consensus 266 ~~~~~~~~~~~~~~~~e~~~Lk~~Le~e~~~~e 298 (660)
.-+|+....+......|...+++..+=-+|++.
T Consensus 670 e~~L~~EveK~k~~a~EAvK~q~EtdlrCQhKI 702 (786)
T PF05483_consen 670 EEELLGEVEKAKLTADEAVKLQEETDLRCQHKI 702 (786)
T ss_pred HHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHH
Confidence 344555555555556666666655555555543
No 233
>KOG0982 consensus Centrosomal protein Nuf [Cell cycle control, cell division, chromosome partitioning; Cytoskeleton]
Probab=93.90 E-value=10 Score=42.06 Aligned_cols=142 Identities=16% Similarity=0.172 Sum_probs=88.2
Q ss_pred HHHHHHHHhhhhhhhhhhhhhhHHHHHHhhHHHHHHHHHHHHHHHHHHhhhhchHHHHHHHHHHHhhhhhhHHHHhhhhh
Q 006114 146 KIVQLEISLKNSKQQQLDNSSYQKVLADTTQMYEKKITELIKQLEIEHARSEGAEEQVDTMKKLISDNQKSIEQYEMENS 225 (660)
Q Consensus 146 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~e~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~ 225 (660)
+...||++.-|.+-+|++. +++.+-..|+.|+.+-+...+....+.|++..+.-++++.|+--
T Consensus 293 Reasle~Enlqmr~qqlee---------entelRs~~arlksl~dklaee~qr~sd~LE~lrlql~~eq~l~-------- 355 (502)
T KOG0982|consen 293 REASLEKENLQMRDQQLEE---------ENTELRSLIARLKSLADKLAEEDQRSSDLLEALRLQLICEQKLR-------- 355 (502)
T ss_pred HHHHHHHHHHHHHHHHHHH---------HHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHH--------
Confidence 3445566655555555544 67888888999999999888888889999999999999988311
Q ss_pred HHHHHHhhHHHHHHHHHHHHhhhhhhhhhhhhhhHHhHHHHHHHhhhhhccccchhHH-HHHHHHHHHHHHHHHhHHHHH
Q 006114 226 TYQKALADTTQLYEKKIAELNKKLEDEHACFEGAVEQLDMVKKLLSDYQNSNQGQKEV-HELCVKLKETRQLHESAVYEV 304 (660)
Q Consensus 226 ~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~-~~Lk~~Le~e~~~~e~~e~E~ 304 (660)
..|...|+-.|+-+..-+|+ -+|++.|+.....+-..+
T Consensus 356 --------------------------------------~rm~d~Lrrfq~ekeatqELieelrkelehlr~~kl~~a--- 394 (502)
T KOG0982|consen 356 --------------------------------------VRMNDILRRFQEEKEATQELIEELRKELEHLRRRKLVLA--- 394 (502)
T ss_pred --------------------------------------HHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHhh---
Confidence 12334455566666666666 667776665544433322
Q ss_pred HHHHHHHHHHH-HhhhhccHHHHHHHHHHHHHHHHhhhhHHHHHHHHhhCCCC
Q 006114 305 QTLKSEYKNLL-EEKETMSDELQAARQRLLVEEKQRKAIEYELVKLKKTAPEH 356 (660)
Q Consensus 305 ~~lks~l~~l~-~~~~~~~eel~~~~k~l~~e~~~rkkLe~E~~~l~~~l~~~ 356 (660)
.-. .....+..|+.+-.++|...- ..|.+....+..+.+..
T Consensus 395 --------~p~rgrsSaRe~eleqevkrLrq~n---r~l~eqneelngtilTl 436 (502)
T KOG0982|consen 395 --------NPVRGRSSAREIELEQEVKRLRQPN---RILSEQNEELNGTILTL 436 (502)
T ss_pred --------ccccCchhHHHHHHHHHHHHhcccc---chhhhhhhhhhhhhhhH
Confidence 111 111234555666555555544 45666666666655443
No 234
>PF12718 Tropomyosin_1: Tropomyosin like; InterPro: IPR000533 Tropomyosins [], are a family of closely related proteins present in muscle and non-muscle cells. In striated muscle, tropomyosin mediate the interactions between the troponin complex and actin so as to regulate muscle contraction []. The role of tropomyosin in smooth muscle and non-muscle tissues is not clear. Tropomyosin is an alpha-helical protein that forms a coiled-coil structure of 2 parallel helices containing 2 sets of 7 alternating actin binding sites []. There are multiple cell-specific isoforms, created by differential splicing of the messenger RNA from one gene, but the proportions of the isoforms vary between different cell types. Muscle isoforms of tropomyosin are characterised by having 284 amino acid residues and a highly conserved N-terminal region, whereas non-muscle forms are generally smaller and are heterogeneous in their N-terminal region. This entry represents tropomyosin (Tmp) 1, 2 and 3. Within the yeast Tmp1 and Tmp2, biochemical and sequence analyses indicate that Tpm2 spans four actin monomers along a filament, whereas Tpm1 spans five. Despite its shorter length, Tpm2 can compete with Tpm1 for binding to F-actin. Over-expression of Tpm2 in vivo alters the axial budding of haploids to a bipolar pattern, and this can be partially suppressed by co-over-expression of Tpm1. This suggests distinct functions for the two tropomyosins, and indicates that the ratio between them is important for correct morphogenesis [].
Probab=93.75 E-value=3 Score=39.83 Aligned_cols=31 Identities=19% Similarity=0.318 Sum_probs=19.9
Q ss_pred HHHHHHHHHhhhhhhhhhhhhhhHHhHHHHH
Q 006114 237 LYEKKIAELNKKLEDEHACFEGAVEQLDMVK 267 (660)
Q Consensus 237 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 267 (660)
-||+++..|..+..+--.+++.++.++..+|
T Consensus 112 ~~eRkv~~le~~~~~~E~k~eel~~k~~~~k 142 (143)
T PF12718_consen 112 HFERKVKALEQERDQWEEKYEELEEKYKEAK 142 (143)
T ss_pred HHHHHHHHHHhhHHHHHHHHHHHHHHHHHhc
Confidence 4666776666666666666666666666554
No 235
>KOG4151 consensus Myosin assembly protein/sexual cycle protein and related proteins [Posttranslational modification, protein turnover, chaperones; Cell cycle control, cell division, chromosome partitioning; General function prediction only]
Probab=93.73 E-value=0.47 Score=55.76 Aligned_cols=188 Identities=16% Similarity=0.072 Sum_probs=124.5
Q ss_pred CchhHHHHHHcCCHHHHHHHHccCCCHHHHHHHHHHHH-HhhcCchhHHHHHhcCccHHHHHhhcCCCCHHHHHHHHHHH
Q 006114 437 EDINQEKIVEEGGLDALLLLLRTSQNTTILRVASGAIA-NLAMNEMNQGLIMSRGGGQLLAKTASKTDDPQTLRMVAGAL 515 (660)
Q Consensus 437 ~~en~~~Ive~GgI~~Lv~LL~~s~d~~v~~~Aa~AL~-nLA~~~~n~~~Ive~g~I~~Ll~LL~~s~d~~v~~~Aa~aL 515 (660)
...-+...+..||...|+.+.. -..+..+..+..||. .+.. +..+ ...+++++.+.+......--...++-++
T Consensus 493 ~K~~~~~~Ik~~~~~aLlrl~~-~q~e~akl~~~~aL~~~i~f-~~~~----~~~v~~~~~s~~~~d~~~~en~E~L~al 566 (748)
T KOG4151|consen 493 EKYERAKKIKPGGYEALLRLGQ-QQFEEAKLKWYHALAGKIDF-PGER----SYEVVKPLDSALHNDEKGLENFEALEAL 566 (748)
T ss_pred hHHhcCccccccHHHHHHHHHH-HhchHHHHHHHHHHhhhcCC-CCCc----hhhhhhhhcchhhhhHHHHHHHHHHHHh
Confidence 4555777889999999999887 456677777888887 2211 1111 1235666666664322222234567899
Q ss_pred HHHh-cChhHHHHHHhccHHHHHHHHhcCCCHHHHHHHHHHHHHhhccchhhhhhcchhhhHHHhh-cChHHHHHHhhcC
Q 006114 516 ANLC-GNEKLHTMLEEDGAIKALLAMVRSGNIDVIAQVARGLANFAKCESRAIVQGQRKGRSHLME-DSALEWLIANSKT 593 (660)
Q Consensus 516 anLa-~~~~~r~~iv~~G~V~~Lv~lL~s~~~~v~~~Al~aLanLA~~~~~~~aq~~~e~r~~Li~-~G~v~~Lv~lL~s 593 (660)
.||+ .+...+..++..-+++.+-.++...++..+..++..+.||..++- ..-..+.+ ...++....++..
T Consensus 567 tnLas~s~s~r~~i~ke~~~~~ie~~~~ee~~~lqraa~e~~~NLl~~~~--------~~e~si~e~~~~l~~w~~~~e~ 638 (748)
T KOG4151|consen 567 TNLASISESDRQKILKEKALGKIEELMTEENPALQRAALESIINLLWSPL--------LYERSIVEYKDRLKLWNLNLEV 638 (748)
T ss_pred hcccCcchhhHHHHHHHhcchhhHHHhhcccHHHHHHHHHHHHHHHhhHH--------HHHHHhhccccCchHHHHHHHh
Confidence 9998 677888889998888888888999999999999999999986531 11222333 4455555555555
Q ss_pred CCHHHHHHHHHHHHHhhcCCccHHH-H-HhcCcHHHHHHHHhcCChH
Q 006114 594 NSASTRRHVELALCHLAQNEDNARD-F-ISRGGAKELVQISIESSRE 638 (660)
Q Consensus 594 ~d~~vr~~Aa~AL~nLa~~~e~~~~-I-ve~G~l~~Lv~lL~s~s~~ 638 (660)
.+.....+++.++..+....+++.. + .-..+...++.++.+++..
T Consensus 639 ~~E~~~lA~a~a~a~I~sv~~n~c~~~~~~~~~~e~~~~~i~~~~~~ 685 (748)
T KOG4151|consen 639 ADEKFELAGAGALAAITSVVENHCSRILELLEWLEILVRAIQDEDDE 685 (748)
T ss_pred hhhHHhhhccccccchhhcchhhhhhHHHhhcchHHHHHhhcCchhh
Confidence 6777888888888866654433222 2 2345666777777766544
No 236
>KOG4653 consensus Uncharacterized conserved protein [Function unknown]
Probab=93.64 E-value=2.2 Score=50.83 Aligned_cols=222 Identities=14% Similarity=0.108 Sum_probs=137.2
Q ss_pred HHHHHHhhCCCCHHHHHHHHHHHHHhhCCchhHHHHHHcCCHHHHHHHHccCCCHHHHHHHHHHHHHhhcCchhHHHHHh
Q 006114 409 LPKILQLLTSEDPDVQIHAVKVVANLAAEDINQEKIVEEGGLDALLLLLRTSQNTTILRVASGAIANLAMNEMNQGLIMS 488 (660)
Q Consensus 409 I~~LV~LL~s~d~~vr~~Aa~aL~nLa~~~en~~~Ive~GgI~~Lv~LL~~s~d~~v~~~Aa~AL~nLA~~~~n~~~Ive 488 (660)
+...+..+.++-+.++..|+..|.++......+..+...+.+...+..|. +.|+-|--+|...+..||.. ..
T Consensus 729 ~qeai~sl~d~qvpik~~gL~~l~~l~e~r~~~~~~~~ekvl~i~ld~Lk-dedsyvyLnaI~gv~~Lcev-------y~ 800 (982)
T KOG4653|consen 729 LQEAISSLHDDQVPIKGYGLQMLRHLIEKRKKATLIQGEKVLAIALDTLK-DEDSYVYLNAIRGVVSLCEV-------YP 800 (982)
T ss_pred HHHHHHHhcCCcccchHHHHHHHHHHHHhcchhhhhhHHHHHHHHHHHhc-ccCceeeHHHHHHHHHHHHh-------cc
Confidence 34455666677789999999999999997777888888888999999998 77887777888877777653 22
Q ss_pred cCccHHHHHh-hcCC--CCHHHHHHHHHHHHHHhc-ChhHHHHHHhccHHHHHHHHhcCCCHHHHHHHHHHHHHhhccch
Q 006114 489 RGGGQLLAKT-ASKT--DDPQTLRMVAGALANLCG-NEKLHTMLEEDGAIKALLAMVRSGNIDVIAQVARGLANFAKCES 564 (660)
Q Consensus 489 ~g~I~~Ll~L-L~~s--~d~~v~~~Aa~aLanLa~-~~~~r~~iv~~G~V~~Lv~lL~s~~~~v~~~Al~aLanLA~~~~ 564 (660)
..++|.|..- .+.. ..++.+-.+-.||.+++. -.+....... -.+...+..+++++...+..+++.+|++|.-..
T Consensus 801 e~il~dL~e~Y~s~k~k~~~d~~lkVGEai~k~~qa~Gel~~~y~~-~Li~tfl~gvrepd~~~RaSS~a~lg~Lcq~~a 879 (982)
T KOG4653|consen 801 EDILPDLSEEYLSEKKKLQTDYRLKVGEAILKVAQALGELVFKYKA-VLINTFLSGVREPDHEFRASSLANLGQLCQLLA 879 (982)
T ss_pred hhhHHHHHHHHHhcccCCCccceehHHHHHHHHHHHhccHHHHHHH-HHHHHHHHhcCCchHHHHHhHHHHHHHHHHHHh
Confidence 3456666652 2211 113444444466666651 1111111111 234445566677777889999999999994321
Q ss_pred hhhhhcchhhhHHHhhcChHHHHHHhhcC-CCHHHHHHHHHHHHHhhcCC-ccHHHHH---hcCcHHHHHHHHhcCChHH
Q 006114 565 RAIVQGQRKGRSHLMEDSALEWLIANSKT-NSASTRRHVELALCHLAQNE-DNARDFI---SRGGAKELVQISIESSRED 639 (660)
Q Consensus 565 ~~~aq~~~e~r~~Li~~G~v~~Lv~lL~s-~d~~vr~~Aa~AL~nLa~~~-e~~~~Iv---e~G~l~~Lv~lL~s~s~~~ 639 (660)
.. +...+ ..++..++.+... ++..+|+.|+-.+..+-.+. ...-.+. -......+..+.+..+.+.
T Consensus 880 ~~-------vsd~~--~ev~~~Il~l~~~d~s~~vRRaAv~li~~lL~~tg~dlLpilr~~l~Dl~~tl~~~vr~~~dd~ 950 (982)
T KOG4653|consen 880 FQ-------VSDFF--HEVLQLILSLETTDGSVLVRRAAVHLLAELLNGTGEDLLPILRLLLIDLDETLLSYVRQHDDDG 950 (982)
T ss_pred hh-------hhHHH--HHHHHHHHHHHccCCchhhHHHHHHHHHHHHhccchhhHHHHHHHHHHHHHHHHHHHhcCchhH
Confidence 00 01111 2344555555554 45778999998888875433 2222222 2345566777777777666
Q ss_pred HHHHHHHHH
Q 006114 640 IRNLAKKTM 648 (660)
Q Consensus 640 ir~~A~~~L 648 (660)
.+-.|...+
T Consensus 951 ~klhaql~l 959 (982)
T KOG4653|consen 951 LKLHAQLCL 959 (982)
T ss_pred HHHHHHHHH
Confidence 666665433
No 237
>TIGR03185 DNA_S_dndD DNA sulfur modification protein DndD. This model describes the DndB protein encoded by an operon associated with a sulfur-containing modification to DNA. The operon is sporadically distributed in bacteria, much like some restriction enzyme operons. DndD is described as a putative ATPase. The small number of examples known so far include species from among the Firmicutes, Actinomycetes, Proteobacteria, and Cyanobacteria.
Probab=93.61 E-value=20 Score=42.57 Aligned_cols=29 Identities=24% Similarity=0.172 Sum_probs=17.5
Q ss_pred HHhhhhhhhhhhhhhhHHhHHHHHHHhhh
Q 006114 244 ELNKKLEDEHACFEGAVEQLDMVKKLLSD 272 (660)
Q Consensus 244 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 272 (660)
...+++..=..+...++++|+.+.+-|..
T Consensus 388 ~~~~~~~~~~~~~~~~e~el~~l~~~l~~ 416 (650)
T TIGR03185 388 ELQDAKSQLLKELRELEEELAEVDKKIST 416 (650)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 33444555555566677777777776654
No 238
>COG1579 Zn-ribbon protein, possibly nucleic acid-binding [General function prediction only]
Probab=93.61 E-value=10 Score=39.28 Aligned_cols=61 Identities=20% Similarity=0.300 Sum_probs=37.5
Q ss_pred HHHHHHHHHHHHHhhhhchHHHHHHHHHHHhhHHH---HHHhhhhhhhHHHHhhhhHHHHHHHHHhhh
Q 006114 69 VELLTAKIEMQQKLRENDKYEFEKQLRESQISYDE---SMRNLVTRSEFLEKENAHLELEVEKILGEL 133 (660)
Q Consensus 69 ~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 133 (660)
+.+|-.++.|-...+. ++.+.|++.++.+.. .+-++...++.+..+.++++.+++++...+
T Consensus 12 iq~lD~e~~rl~~~~~----~~~~~l~k~~~e~e~~~~~~~~~~~e~e~le~qv~~~e~ei~~~r~r~ 75 (239)
T COG1579 12 IQKLDLEKDRLEPRIK----EIRKALKKAKAELEALNKALEALEIELEDLENQVSQLESEIQEIRERI 75 (239)
T ss_pred HHHHHHHHHHHHHhhh----hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3355556666555533 555556665555544 444556667777777888888877776655
No 239
>PF04849 HAP1_N: HAP1 N-terminal conserved region; InterPro: IPR006933 This family is defined by an N-terminal conserved region found in several huntingtin-associated protein 1 (HAP1) homologues. HAP1 binds to huntingtin in a polyglutamine repeat-length-dependent manner. However, its possible role in the pathogenesis of Huntingtons disease is unclear. This family also includes a similar N-terminal conserved region from hypothetical protein products of ALS2CR3 genes found in the human juvenile amyotrophic lateral sclerosis critical region 2q33-2q34 [].
Probab=93.60 E-value=11 Score=40.27 Aligned_cols=80 Identities=15% Similarity=0.250 Sum_probs=60.3
Q ss_pred hhhhccccchhHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHhhhhccHHHHHHHHHHHHHHHHhhhhHHHHHHHH
Q 006114 271 SDYQNSNQGQKEVHELCVKLKETRQLHESAVYEVQTLKSEYKNLLEEKETMSDELQAARQRLLVEEKQRKAIEYELVKLK 350 (660)
Q Consensus 271 ~~~~~~~~~~~e~~~Lk~~Le~e~~~~e~~e~E~~~lks~l~~l~~~~~~~~eel~~~~k~l~~e~~~rkkLe~E~~~l~ 350 (660)
-|...+..-+..++.|...|.+-........+||.+|.+++-+++.-......|-..+...|...--....|..|+..++
T Consensus 203 dcv~QL~~An~qia~LseELa~k~Ee~~rQQEEIt~LlsqivdlQ~r~k~~~~EnEeL~q~L~~ske~Q~~L~aEL~elq 282 (306)
T PF04849_consen 203 DCVKQLSEANQQIASLSEELARKTEENRRQQEEITSLLSQIVDLQQRCKQLAAENEELQQHLQASKESQRQLQAELQELQ 282 (306)
T ss_pred HHHHHhhhcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34556677788899999999999999999999999999999999887777766666666665555444455555554443
No 240
>KOG1061 consensus Vesicle coat complex AP-1/AP-2/AP-4, beta subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=93.52 E-value=0.71 Score=54.16 Aligned_cols=141 Identities=18% Similarity=0.213 Sum_probs=101.3
Q ss_pred HHHHHHhhCCCCHHHHHHHHHHHHHhhC-CchhHHHHHHcCCHHHHHHHHccCCCHHHHHHHHHHHHHhhcCchhHHHHH
Q 006114 409 LPKILQLLTSEDPDVQIHAVKVVANLAA-EDINQEKIVEEGGLDALLLLLRTSQNTTILRVASGAIANLAMNEMNQGLIM 487 (660)
Q Consensus 409 I~~LV~LL~s~d~~vr~~Aa~aL~nLa~-~~en~~~Ive~GgI~~Lv~LL~~s~d~~v~~~Aa~AL~nLA~~~~n~~~Iv 487 (660)
.|.++..+...|.+.+.-.---|.+.+. +|+.+. +++..++.=.. ++++.++..|.+.++.+-. +..
T Consensus 51 F~dvvk~~~T~dlelKKlvyLYl~nYa~~~P~~a~-----~avnt~~kD~~-d~np~iR~lAlrtm~~l~v-~~i----- 118 (734)
T KOG1061|consen 51 FPDVVKCMQTRDLELKKLVYLYLMNYAKGKPDLAI-----LAVNTFLKDCE-DPNPLIRALALRTMGCLRV-DKI----- 118 (734)
T ss_pred hHHHHhhcccCCchHHHHHHHHHHHhhccCchHHH-----hhhhhhhccCC-CCCHHHHHHHhhceeeEee-hHH-----
Confidence 5566666667778888888888888887 554332 34555555554 6788888777776665522 221
Q ss_pred hcCccHHHHHhhcCCCCHHHHHHHHHHHHHHhcChhHHHHHHhccHHHHHHHHhcCCCHHHHHHHHHHHHHhhccch
Q 006114 488 SRGGGQLLAKTASKTDDPQTLRMVAGALANLCGNEKLHTMLEEDGAIKALLAMVRSGNIDVIAQVARGLANFAKCES 564 (660)
Q Consensus 488 e~g~I~~Ll~LL~~s~d~~v~~~Aa~aLanLa~~~~~r~~iv~~G~V~~Lv~lL~s~~~~v~~~Al~aLanLA~~~~ 564 (660)
-...+.+|..++.+ .+|-++..|+-+++++-..+ .......|.++.|.+++.+.+|.|..+|+.+|..|...++
T Consensus 119 ~ey~~~Pl~~~l~d-~~~yvRktaa~~vakl~~~~--~~~~~~~gl~~~L~~ll~D~~p~VVAnAlaaL~eI~e~~~ 192 (734)
T KOG1061|consen 119 TEYLCDPLLKCLKD-DDPYVRKTAAVCVAKLFDID--PDLVEDSGLVDALKDLLSDSNPMVVANALAALSEIHESHP 192 (734)
T ss_pred HHHHHHHHHHhccC-CChhHHHHHHHHHHHhhcCC--hhhccccchhHHHHHHhcCCCchHHHHHHHHHHHHHHhCC
Confidence 12246788888865 88999999988888876432 2355678999999999999999999999999999986554
No 241
>KOG3665 consensus ZYG-1-like serine/threonine protein kinases [General function prediction only]
Probab=93.50 E-value=0.43 Score=56.77 Aligned_cols=196 Identities=15% Similarity=0.152 Sum_probs=123.8
Q ss_pred HHHHhhC-CchhHHHHHHcCCHHHHHHHHccCCCHHHHHHHHHHHHHhhcCchhHHHHHhcCccH--HHHHhhcCCCCHH
Q 006114 430 VVANLAA-EDINQEKIVEEGGLDALLLLLRTSQNTTILRVASGAIANLAMNEMNQGLIMSRGGGQ--LLAKTASKTDDPQ 506 (660)
Q Consensus 430 aL~nLa~-~~en~~~Ive~GgI~~Lv~LL~~s~d~~v~~~Aa~AL~nLA~~~~n~~~Ive~g~I~--~Ll~LL~~s~d~~ 506 (660)
+|.++.. +++++..+.+.||+..+..++......+++..+.+.+.|++.....+........+. .+-.++....+.+
T Consensus 494 ~l~~~t~~~~~~C~~~l~~~g~~~~~~~l~~f~~~~~~~~il~~l~n~~~~~~~~~~~~~~~~~~~~~f~~~~~~w~~~e 573 (699)
T KOG3665|consen 494 ALWNITDENPETCKEFLDNGGMKLLFKCLESFDNEELHRKILGLLGNLAEVLELRELLMIFEFIDFSVFKVLLNKWDSIE 573 (699)
T ss_pred HHHhhhcCCHHHHHHHHhcccHHHHHHHHhhccchhHHHHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHHHHHhhcchhh
Confidence 7888888 799999999999999999999977788899999999999998765555544322222 3334454444557
Q ss_pred HHHHHHHHHHHHhcChhHHHHHHhccHHHHHHHHhcCCCHHHHHHHHHHHHHhhccchhhhhhcchhhhHHHhhcChHHH
Q 006114 507 TLRMVAGALANLCGNEKLHTMLEEDGAIKALLAMVRSGNIDVIAQVARGLANFAKCESRAIVQGQRKGRSHLMEDSALEW 586 (660)
Q Consensus 507 v~~~Aa~aLanLa~~~~~r~~iv~~G~V~~Lv~lL~s~~~~v~~~Al~aLanLA~~~~~~~aq~~~e~r~~Li~~G~v~~ 586 (660)
.-..|++.|+.+..+.+. ....+.=+.+-.++ ..++.....+. ........+.+
T Consensus 574 rsY~~~siLa~ll~~~~~---~~~~~~r~~~~~~l-----------~e~i~~~~~~~------------~~~~~~~~f~~ 627 (699)
T KOG3665|consen 574 RSYNAASILALLLSDSEK---TTECVFRNSVNELL-----------VEAISRWLTSE------------IRVINDRSFFP 627 (699)
T ss_pred HHHHHHHHHHHHHhCCCc---CccccchHHHHHHH-----------HHHhhccCccc------------eeehhhhhcch
Confidence 888899999888744322 11111111111111 11111111110 01111222222
Q ss_pred -HHHhhc-CCCHHHHHHHHHHHHHhhc-CCccHHHHHhcCcHHHHHHHHhcCChHHHHHHHHHHHhcC
Q 006114 587 -LIANSK-TNSASTRRHVELALCHLAQ-NEDNARDFISRGGAKELVQISIESSREDIRNLAKKTMKSN 651 (660)
Q Consensus 587 -Lv~lL~-s~d~~vr~~Aa~AL~nLa~-~~e~~~~Ive~G~l~~Lv~lL~s~s~~~ir~~A~~~L~~~ 651 (660)
+.+++. +..+.....|.|++.+++. ++++...+...|+++.+..+.-......++..+...+..+
T Consensus 628 ~~~~il~~s~~~g~~lWal~ti~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~ 695 (699)
T KOG3665|consen 628 RILRILRLSKSDGSQLWALWTIKNVLEQNKEYCKLVRESNGFELIENIRVLSEVVDVKEEAVLVIESC 695 (699)
T ss_pred hHHHHhcccCCCchHHHHHHHHHHHHHcChhhhhhhHhccchhhhhhcchhHHHHHHHHHHHHHhhcc
Confidence 334443 3467788889999999986 4577777888999988888776555455777776665443
No 242
>PF08324 PUL: PUL domain; InterPro: IPR013535 The PUL (after PLAP, UFD3 and lub1) domain is a predicted predominantly alpha helical globular domain found in eukaryotes. It is found in association with either WD repeats (see PDOC00574 from PROSITEDOC) and the PFU domain (see PDOC51394 from PROSITEDOC) or PPPDE and thioredoxin (see PDOC00172 from PROSITEDOC) domains. The PUL domain is a protein-protein interaction domain [, ]. Some proteins known to contain a PUL domain are listed below: Saccharomyces cerevisiae DOA1 (UFD3, ZZZ4), involved in ubiquitin conjugation pathway. DOA1 participates in the regulation of the ubiquitin conjugation pathway involving CDC48 by hindering multiubiquitination of substrates at the CDC48 chaperone. Schizosaccharomyces pombe ubiquitin homeostasis protein lub1, acts as a negative regulator of vacuole-dependent ubiquitin degradation. Mammalian phospholipase A-2-activating protein (PLA2P, PLAA), the homologue of DOA1. PLA2P plays an important role in the regulation of specific inflammatory disease processes. ; PDB: 3EBB_A 3L3F_X 3GAE_B 3PST_A 3PSP_A.
Probab=93.42 E-value=1.4 Score=45.85 Aligned_cols=141 Identities=13% Similarity=0.088 Sum_probs=89.0
Q ss_pred HHHHHHHHHHhhCCchhHHHHHHcC--CHHHHHHHHccC---CCHHHHHHHHHHHHHhhcCchhHHHHHhcC--ccHHHH
Q 006114 424 QIHAVKVVANLAAEDINQEKIVEEG--GLDALLLLLRTS---QNTTILRVASGAIANLAMNEMNQGLIMSRG--GGQLLA 496 (660)
Q Consensus 424 r~~Aa~aL~nLa~~~en~~~Ive~G--gI~~Lv~LL~~s---~d~~v~~~Aa~AL~nLA~~~~n~~~Ive~g--~I~~Ll 496 (660)
+--++-++.-++.++.....+...+ ....+..++... ..+..+-.++++++|+..++.++..+.... .|...+
T Consensus 80 ~fP~lDLlRl~~l~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~ml~lR~l~NlF~~~~~~~~~~~~~~~~i~~~~ 159 (268)
T PF08324_consen 80 RFPALDLLRLAALHPPASDLLASEDSGIADLLSTLISSGSSSSPPANQMLALRLLANLFSHPPGRQLLLSHFDSSILELL 159 (268)
T ss_dssp -HHHHHHHHHHCCCHCHHHHHHSTTTH-HHHHHHHHHCCTTTSSHHHHHHHHHHHHHHTTSCCCHHHHHCTHHTCHHHHC
T ss_pred chhHHhHHHHHHhCccHHHHHhccccchHHHHHHHHHhccCCCcHHHHHHHHHHHHHhhCCCccHHHHHhcccchHHHHH
Confidence 4455666655566666655555443 245555555433 467778889999999999999998888744 344444
Q ss_pred HhhcCCC---CHHHHHHHHHHHHHHhcC-hhHH-HHHHhccHHHHHHHHhc--CCCHHHHHHHHHHHHHhhccch
Q 006114 497 KTASKTD---DPQTLRMVAGALANLCGN-EKLH-TMLEEDGAIKALLAMVR--SGNIDVIAQVARGLANFAKCES 564 (660)
Q Consensus 497 ~LL~~s~---d~~v~~~Aa~aLanLa~~-~~~r-~~iv~~G~V~~Lv~lL~--s~~~~v~~~Al~aLanLA~~~~ 564 (660)
..+..+. +..++..++.++.|++.. ...+ ..-.....+..++..+. ..++++...++.+||++...++
T Consensus 160 ~~~~~~~~~~~kn~~~A~ATl~~Nlsv~~~~~~~~~~~~~~ll~~i~~~~~~~~~d~Ea~~R~LvAlGtL~~~~~ 234 (268)
T PF08324_consen 160 SSLLSSLLDSNKNVRIALATLLLNLSVLLHKNRSDEEWQSELLSSIIEVLSREESDEEALYRLLVALGTLLSSSD 234 (268)
T ss_dssp HCCCTTS-HHHHHHHHHHHHHHHHHHHHHHHCTS-CCHHHHHHHHHHHHCHCCHTSHHHHHHHHHHHHHHHCCSH
T ss_pred HHHhhccccccHHHHHHHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHhccccCCHHHHHHHHHHHHHHhccCh
Confidence 4333332 678898999999999821 1110 00011124555666332 3699999999999999996653
No 243
>PF11701 UNC45-central: Myosin-binding striated muscle assembly central; InterPro: IPR024660 The UNC-45 or small muscle protein 1 of Caenorhabditis elegans is expressed in two forms from different genomic positions in mammals: as a general tissue protein (UNC-45a) and as a specific form (UNC-45b) expressed only in striated and skeletal muscle. Myofibril formation requires both UNC-45 forms, consistent with the fact that the cytoskeleton is necessary for the development and maintenance of organised myofibrils []. Rng3 (Ring assembly protein 3), the homologue in Schizosaccharomyces pombe, is crucial for cell shape, normal actin cytoskeleton, and contractile ring assembly, and is essential for assembly of the myosin II-containing progenitors of the contractile ring. Widespread defects in the cytoskeleton are found in null mutants of all three fungal proteins []. Mammalian Unc45 is found to act as a specific chaperone during the folding of myosin and the assembly of striated muscle by forming a stable complex with the general chaperone Hsp90 []. All members carry up to three amino-terminal tetratricopeptide repeat (TPR) and a UCS domain at the C terminus that contains a number of Arm repeats. ; PDB: 3OPB_A 3NOW_A.
Probab=93.40 E-value=0.62 Score=45.00 Aligned_cols=147 Identities=12% Similarity=0.101 Sum_probs=93.8
Q ss_pred ccHHHHHhhcC-CCCHHHHHHHHHHHHHHhcChhHHHHHHhccHHHHHHHHhcCCCHHHHHHHHHHHHHhhccchhhhhh
Q 006114 491 GGQLLAKTASK-TDDPQTLRMVAGALANLCGNEKLHTMLEEDGAIKALLAMVRSGNIDVIAQVARGLANFAKCESRAIVQ 569 (660)
Q Consensus 491 ~I~~Ll~LL~~-s~d~~v~~~Aa~aLanLa~~~~~r~~iv~~G~V~~Lv~lL~s~~~~v~~~Al~aLanLA~~~~~~~aq 569 (660)
.++.++..|.. ..+++++..|+-++..+- +..+... ..-+-+.+-..+..++.+....++.++..+=-..|+
T Consensus 4 ~l~~lL~~L~~~~~~~~~r~~a~v~l~k~l--~~~~~~~-~~~~~~~i~~~~~~~~~d~~i~~~~~l~~lfp~~~d---- 76 (157)
T PF11701_consen 4 ELDTLLTSLDMLRQPEEVRSHALVILSKLL--DAAREEF-KEKISDFIESLLDEGEMDSLIIAFSALTALFPGPPD---- 76 (157)
T ss_dssp CCCHHHHHHHCTTTSCCHHHHHHHHHHHHH--HHHHHHH-HHHHHHHHHHHHCCHHCCHHHHHHHHHHHHCTTTHH----
T ss_pred HHHHHHHHhcccCCCHhHHHHHHHHHHHHH--HHhHHHH-HHHHHHHHHHHHccccchhHHHHHHHHHHHhCCCHH----
Confidence 45555555543 456678888887777763 2222222 222334444555544444555666666555322222
Q ss_pred cchhhhHHHhhcChHHHHHHhhc--CCCHHHHHHHHHHHHHhhcCCccHHHHHhcCcHHHHHHHHhcCChHH-HHHHHHH
Q 006114 570 GQRKGRSHLMEDSALEWLIANSK--TNSASTRRHVELALCHLAQNEDNARDFISRGGAKELVQISIESSRED-IRNLAKK 646 (660)
Q Consensus 570 ~~~e~r~~Li~~G~v~~Lv~lL~--s~d~~vr~~Aa~AL~nLa~~~e~~~~Ive~G~l~~Lv~lL~s~s~~~-ir~~A~~ 646 (660)
.+...+...|.++.++.++. +.+..+...++.+|..=|.+...+..+.+. +++.|..+...+.++. +|..|.-
T Consensus 77 ---v~~~l~~~eg~~~~l~~~~~~~~~~~~~~~~~lell~aAc~d~~~r~~I~~~-~~~~L~~~~~~~~~~~~ir~~A~v 152 (157)
T PF11701_consen 77 ---VGSELFLSEGFLESLLPLASRKSKDRKVQKAALELLSAACIDKSCRTFISKN-YVSWLKELYKNSKDDSEIRVLAAV 152 (157)
T ss_dssp ---HHHHHCCTTTHHHHHHHHHH-CTS-HHHHHHHHHHHHHHTTSHHHHHCCHHH-CHHHHHHHTTTCC-HH-CHHHHHH
T ss_pred ---HHHHHHhhhhHHHHHHHHHhcccCCHHHHHHHHHHHHHHHccHHHHHHHHHH-HHHHHHHHHccccchHHHHHHHHH
Confidence 34456677999999999998 778889999898888878887777766666 6688999997666565 7877775
Q ss_pred HH
Q 006114 647 TM 648 (660)
Q Consensus 647 ~L 648 (660)
.|
T Consensus 153 ~L 154 (157)
T PF11701_consen 153 GL 154 (157)
T ss_dssp HH
T ss_pred HH
Confidence 55
No 244
>KOG1077 consensus Vesicle coat complex AP-2, alpha subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=93.40 E-value=2.3 Score=49.69 Aligned_cols=208 Identities=13% Similarity=0.087 Sum_probs=125.3
Q ss_pred CCHHHHHHhhCCCCHHHHHHHHHHHHHhhC-Cchh-HHHHHHcCCHHHHHHHHcc------------CCCHHHHHHHHHH
Q 006114 407 VGLPKILQLLTSEDPDVQIHAVKVVANLAA-EDIN-QEKIVEEGGLDALLLLLRT------------SQNTTILRVASGA 472 (660)
Q Consensus 407 ggI~~LV~LL~s~d~~vr~~Aa~aL~nLa~-~~en-~~~Ive~GgI~~Lv~LL~~------------s~d~~v~~~Aa~A 472 (660)
+...+++.+|...+-.|-..|...+-.|+. +|+. +..+.- +|..|..+... -|.|=+...++++
T Consensus 187 ~W~~riv~LL~D~~~gv~ta~~sLi~~lvk~~p~~yk~~~~~--avs~L~riv~~~~t~~qdYTyy~vP~PWL~vKl~rl 264 (938)
T KOG1077|consen 187 EWAQRIVHLLDDQHMGVVTAATSLIEALVKKNPESYKTCLPL--AVSRLSRIVVVVGTSLQDYTYYFVPAPWLQVKLLRL 264 (938)
T ss_pred hHHHHHHHHhCccccceeeehHHHHHHHHHcCCHHHhhhHHH--HHHHHHHHHhhcccchhhceeecCCChHHHHHHHHH
Confidence 568899999998888888888888888887 5543 322221 13333332211 1456677788888
Q ss_pred HHHhhcC--chhHHHHHhcCccHHHHHhhcCCC-CHHHHH-----HHHHHHHHHh-cChhHHHHHHhccHHHHHHHHhcC
Q 006114 473 IANLAMN--EMNQGLIMSRGGGQLLAKTASKTD-DPQTLR-----MVAGALANLC-GNEKLHTMLEEDGAIKALLAMVRS 543 (660)
Q Consensus 473 L~nLA~~--~~n~~~Ive~g~I~~Ll~LL~~s~-d~~v~~-----~Aa~aLanLa-~~~~~r~~iv~~G~V~~Lv~lL~s 543 (660)
|.++-.. +..+..+.+ ++..++.....++ ...++. .+..-..+|+ +.+.-...+. .++..|-.++.+
T Consensus 265 Lq~~p~~~D~~~r~~l~e--vl~~iLnk~~~~~~~k~vq~~na~naVLFeaI~l~~h~D~e~~ll~--~~~~~Lg~fls~ 340 (938)
T KOG1077|consen 265 LQIYPTPEDPSTRARLNE--VLERILNKAQEPPKSKKVQHSNAKNAVLFEAISLAIHLDSEPELLS--RAVNQLGQFLSH 340 (938)
T ss_pred HHhCCCCCCchHHHHHHH--HHHHHHhccccCccccchHhhhhHHHHHHHHHHHHHHcCCcHHHHH--HHHHHHHHHhhc
Confidence 8877333 223333322 3444444444221 111221 1111122333 3333333444 368888899999
Q ss_pred CCHHHHHHHHHHHHHhhccchhhhhhcchhhhHHHhhcChHHHHHHhhc-CCCHHHHHHHHHHHHHhhcCCccHHHHHhc
Q 006114 544 GNIDVIAQVARGLANFAKCESRAIVQGQRKGRSHLMEDSALEWLIANSK-TNSASTRRHVELALCHLAQNEDNARDFISR 622 (660)
Q Consensus 544 ~~~~v~~~Al~aLanLA~~~~~~~aq~~~e~r~~Li~~G~v~~Lv~lL~-s~d~~vr~~Aa~AL~nLa~~~e~~~~Ive~ 622 (660)
..++++.-|+..++.+|++... ...+..+ .+.++..|+ ..|..+|+.|+-.|..+|-.+ |+..|
T Consensus 341 rE~NiRYLaLEsm~~L~ss~~s---------~davK~h--~d~Ii~sLkterDvSirrravDLLY~mcD~~-Nak~I--- 405 (938)
T KOG1077|consen 341 RETNIRYLALESMCKLASSEFS---------IDAVKKH--QDTIINSLKTERDVSIRRRAVDLLYAMCDVS-NAKQI--- 405 (938)
T ss_pred ccccchhhhHHHHHHHHhccch---------HHHHHHH--HHHHHHHhccccchHHHHHHHHHHHHHhchh-hHHHH---
Confidence 9999999999999999987431 1222222 677788888 568999999999999998655 33444
Q ss_pred CcHHHHHHHHhcCCh
Q 006114 623 GGAKELVQISIESSR 637 (660)
Q Consensus 623 G~l~~Lv~lL~s~s~ 637 (660)
|..|++++...+.
T Consensus 406 --V~elLqYL~tAd~ 418 (938)
T KOG1077|consen 406 --VAELLQYLETADY 418 (938)
T ss_pred --HHHHHHHHhhcch
Confidence 3456666665443
No 245
>PRK09039 hypothetical protein; Validated
Probab=93.38 E-value=4.5 Score=44.18 Aligned_cols=144 Identities=17% Similarity=0.193 Sum_probs=74.8
Q ss_pred HHHHHhhHHHHHHHHHHHHHHHHHHhhhhchHHHHHHHHHHHhhhhhhHHHHhhhhhHHHHHHhhHHHHHHHHHHHHhhh
Q 006114 169 KVLADTTQMYEKKITELIKQLEIEHARSEGAEEQVDTMKKLISDNQKSIEQYEMENSTYQKALADTTQLYEKKIAELNKK 248 (660)
Q Consensus 169 ~~~~~~~~~~~~~~~~l~~~l~~e~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~ 248 (660)
-||..++..+++++.+|..++-+ |+++-.+.....+.|...
T Consensus 42 ~fLs~~i~~~~~eL~~L~~qIa~---------------------------------------L~e~L~le~~~~~~l~~~ 82 (343)
T PRK09039 42 FFLSREISGKDSALDRLNSQIAE---------------------------------------LADLLSLERQGNQDLQDS 82 (343)
T ss_pred HHHHHHHhhHHHHHHHHHHHHHH---------------------------------------HHHHHHHHHHHHhhHHHH
Confidence 37777777777777776666533 222223333333333333
Q ss_pred hhhhhhhhhhhHHhHHHHHHHhhhhhc-cccchhHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHhhhhccHHHHH
Q 006114 249 LEDEHACFEGAVEQLDMVKKLLSDYQN-SNQGQKEVHELCVKLKETRQLHESAVYEVQTLKSEYKNLLEEKETMSDELQA 327 (660)
Q Consensus 249 ~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~e~~~Lk~~Le~e~~~~e~~e~E~~~lks~l~~l~~~~~~~~eel~~ 327 (660)
+..-.++++.++.+-..+...+..... ...-...+..+...|..+...+...--.|..|+.++..|...-+..+++|..
T Consensus 83 l~~l~~~l~~a~~~r~~Le~~~~~~~~~~~~~~~~~~~l~~~L~~~k~~~se~~~~V~~L~~qI~aLr~Qla~le~~L~~ 162 (343)
T PRK09039 83 VANLRASLSAAEAERSRLQALLAELAGAGAAAEGRAGELAQELDSEKQVSARALAQVELLNQQIAALRRQLAALEAALDA 162 (343)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhhhhcchHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333333333444444444443332111 1122333456666666666666666666666666666666666666666666
Q ss_pred HHHHHHHHHHHhhhhHHHHHHHHh
Q 006114 328 ARQRLLVEEKQRKAIEYELVKLKK 351 (660)
Q Consensus 328 ~~k~l~~e~~~rkkLe~E~~~l~~ 351 (660)
...+..+--.+-..+..++...++
T Consensus 163 ae~~~~~~~~~i~~L~~~L~~a~~ 186 (343)
T PRK09039 163 SEKRDRESQAKIADLGRRLNVALA 186 (343)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 555554444444455555555443
No 246
>PF05483 SCP-1: Synaptonemal complex protein 1 (SCP-1); InterPro: IPR008827 Synaptonemal complex protein 1 (SCP-1) is the major component of the transverse filaments of the synaptonemal complex. Synaptonemal complexes are structures that are formed between homologous chromosomes during meiotic prophase [].; GO: 0007130 synaptonemal complex assembly, 0000795 synaptonemal complex
Probab=93.32 E-value=21 Score=41.93 Aligned_cols=99 Identities=20% Similarity=0.249 Sum_probs=76.3
Q ss_pred HHHHHHHHHHhhhhhhhhhhhhhhHHhHHHHHHHhh-hhhccccchhHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHH
Q 006114 236 QLYEKKIAELNKKLEDEHACFEGAVEQLDMVKKLLS-DYQNSNQGQKEVHELCVKLKETRQLHESAVYEVQTLKSEYKNL 314 (660)
Q Consensus 236 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~e~~~Lk~~Le~e~~~~e~~e~E~~~lks~l~~l 314 (660)
..|+.|+..|.||+|.-.-+.+.+..+=..+|+.+. ..-++.+-.-.|..|+..+++.-+.+ +++..+++.++..-
T Consensus 590 k~lenk~~~LrKqvEnk~K~ieeLqqeNk~LKKk~~aE~kq~~~~eikVn~L~~E~e~~kk~~---eE~~~~~~keie~K 666 (786)
T PF05483_consen 590 KILENKCNNLRKQVENKNKNIEELQQENKALKKKITAESKQSNVYEIKVNKLQEELENLKKKH---EEETDKYQKEIESK 666 (786)
T ss_pred HHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHH---HHHHHHHHHHHHHh
Confidence 368999999999999998888888888777776554 45566666677788888888877665 46678888888877
Q ss_pred HHhhhhccHHHHHHHHHHHHHHH
Q 006114 315 LEEKETMSDELQAARQRLLVEEK 337 (660)
Q Consensus 315 ~~~~~~~~eel~~~~k~l~~e~~ 337 (660)
..+.+-+..|+...+-...+-+.
T Consensus 667 ~~~e~~L~~EveK~k~~a~EAvK 689 (786)
T PF05483_consen 667 SISEEELLGEVEKAKLTADEAVK 689 (786)
T ss_pred hhhHHHHHHHHHHHHHHHHHHHH
Confidence 77777777788887777666664
No 247
>PF10212 TTKRSYEDQ: Predicted coiled-coil domain-containing protein; InterPro: IPR019348 This entry represents a C-terminal 500 residue region, which contains a conserved TTKRSYEDQ motif. It is found in a family of coiled-coil domain-containing proteins that are conserved from nematodes to humans. These proteins also contain an N-terminal domain with a KLRAQ motif (IPR019343 from INTERPRO). The function of these proteins is not known.
Probab=93.24 E-value=6.9 Score=44.55 Aligned_cols=90 Identities=20% Similarity=0.300 Sum_probs=55.6
Q ss_pred HHHHHHHHHHHHHHHHHHhhhhchHHHHHHHHHHHhhhhhhHHHHh-------hhhhHHHHHHhhHHHHHHHHHHHHhhh
Q 006114 176 QMYEKKITELIKQLEIEHARSEGAEEQVDTMKKLISDNQKSIEQYE-------MENSTYQKALADTTQLYEKKIAELNKK 248 (660)
Q Consensus 176 ~~~~~~~~~l~~~l~~e~~~~~~~~~~~~~l~~~l~~~~~~~~~~~-------~~~~~~~~~l~~~~~~~~~~~~~~~~~ 248 (660)
.-|..+|.+|..+++.=.++...+.++...|...|....+...... -.....+..|.-|..-||.+|.-+...
T Consensus 416 ~~Y~~RI~eLt~qlQ~adSKa~~f~~Ec~aL~~rL~~aE~ek~~l~eeL~~a~~~i~~LqDEL~TTr~NYE~QLs~MSEH 495 (518)
T PF10212_consen 416 SYYMSRIEELTSQLQHADSKAVHFYAECRALQKRLESAEKEKESLEEELKEANQNISRLQDELETTRRNYEEQLSMMSEH 495 (518)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHH
Confidence 4467777788877777777777777777777776665543332221 223345567777888888888877776
Q ss_pred hhhhhhhhhhhHHhHHH
Q 006114 249 LEDEHACFEGAVEQLDM 265 (660)
Q Consensus 249 ~~~~~~~~~~~~~~~~~ 265 (660)
|-.=+.+...-.++.+.
T Consensus 496 LasmNeqL~~Q~eeI~~ 512 (518)
T PF10212_consen 496 LASMNEQLAKQREEIQT 512 (518)
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 66444433333333333
No 248
>KOG0414 consensus Chromosome condensation complex Condensin, subunit D2 [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning]
Probab=93.23 E-value=0.88 Score=55.62 Aligned_cols=139 Identities=16% Similarity=0.166 Sum_probs=106.5
Q ss_pred CHHHHHHhhC----CCCHHHHHHHHHHHHHhhC-CchhHHHHHHcCCHHHHHHHHccCCCHHHHHHHHHHHHHhhcC-ch
Q 006114 408 GLPKILQLLT----SEDPDVQIHAVKVVANLAA-EDINQEKIVEEGGLDALLLLLRTSQNTTILRVASGAIANLAMN-EM 481 (660)
Q Consensus 408 gI~~LV~LL~----s~d~~vr~~Aa~aL~nLa~-~~en~~~Ive~GgI~~Lv~LL~~s~d~~v~~~Aa~AL~nLA~~-~~ 481 (660)
..|.++...+ ..++++|.+|.-+|+.+.. +.+.+ +. .+|.|+..+..+++|.++.++..+++-||.. |.
T Consensus 920 f~piv~e~c~n~~~~sdp~Lq~AAtLaL~klM~iSa~fc----es-~l~llftimeksp~p~IRsN~VvalgDlav~fpn 994 (1251)
T KOG0414|consen 920 FAPIVVEGCRNPGLFSDPELQAAATLALGKLMCISAEFC----ES-HLPLLFTIMEKSPSPRIRSNLVVALGDLAVRFPN 994 (1251)
T ss_pred HHHHHHHHhcCCCcCCCHHHHHHHHHHHHHHhhhhHHHH----HH-HHHHHHHHHhcCCCceeeecchheccchhhhccc
Confidence 4666777774 4689999999999998776 44333 22 5899999999899999999999999999865 44
Q ss_pred hHHHHHhcCccHHHHHhhcCCCCHHHHHHHHHHHHHHhcChhHHHHHHhccHHHHHHHHhcCCCHHHHHHHHHHHHHhhc
Q 006114 482 NQGLIMSRGGGQLLAKTASKTDDPQTLRMVAGALANLCGNEKLHTMLEEDGAIKALLAMVRSGNIDVIAQVARGLANFAK 561 (660)
Q Consensus 482 n~~~Ive~g~I~~Ll~LL~~s~d~~v~~~Aa~aLanLa~~~~~r~~iv~~G~V~~Lv~lL~s~~~~v~~~Al~aLanLA~ 561 (660)
.-+. .-+.|...|.+ +++.|++.|..+|.+|..++ .|--.|.++-+.-++..+++.+..-|-..+-.|+.
T Consensus 995 lie~-----~T~~Ly~rL~D-~~~~vRkta~lvlshLILnd----miKVKGql~eMA~cl~D~~~~IsdlAk~FF~Els~ 1064 (1251)
T KOG0414|consen 995 LIEP-----WTEHLYRRLRD-ESPSVRKTALLVLSHLILND----MIKVKGQLSEMALCLEDPNAEISDLAKSFFKELSS 1064 (1251)
T ss_pred ccch-----hhHHHHHHhcC-ccHHHHHHHHHHHHHHHHhh----hhHhcccHHHHHHHhcCCcHHHHHHHHHHHHHhhh
Confidence 2221 23557777765 89999999999999998643 44446889999999999999988887766666653
No 249
>COG5240 SEC21 Vesicle coat complex COPI, gamma subunit [Intracellular trafficking and secretion]
Probab=93.18 E-value=1.8 Score=49.37 Aligned_cols=211 Identities=17% Similarity=0.191 Sum_probs=120.0
Q ss_pred CHHHHHHhhCCCCHHHHHHHHHHHHHhhC-Cch--------hHHHHHHcC---CHHHHHHHHccCCCHHH----------
Q 006114 408 GLPKILQLLTSEDPDVQIHAVKVVANLAA-EDI--------NQEKIVEEG---GLDALLLLLRTSQNTTI---------- 465 (660)
Q Consensus 408 gI~~LV~LL~s~d~~vr~~Aa~aL~nLa~-~~e--------n~~~Ive~G---gI~~Lv~LL~~s~d~~v---------- 465 (660)
.+..|-.+|.++....|-.|.++|..|+. .|. .-..|.+.+ ..-++..+|+++++..+
T Consensus 304 ~vs~L~~fL~s~rv~~rFsA~Riln~lam~~P~kv~vcN~evEsLIsd~Nr~IstyAITtLLKTGt~e~idrLv~~I~sf 383 (898)
T COG5240 304 TVSSLRTFLKSTRVVLRFSAMRILNQLAMKYPQKVSVCNKEVESLISDENRTISTYAITTLLKTGTEETIDRLVNLIPSF 383 (898)
T ss_pred HHHHHHHHHhcchHHHHHHHHHHHHHHHhhCCceeeecChhHHHHhhcccccchHHHHHHHHHcCchhhHHHHHHHHHHH
Confidence 35566677889999999999999999987 332 122222221 12334445554443322
Q ss_pred --------HHHHHHHHHHhhcC-chhHH--------HHHhcCc-------cHHHHHhhcCCCCHHHHHHHHHHHHHHhcC
Q 006114 466 --------LRVASGAIANLAMN-EMNQG--------LIMSRGG-------GQLLAKTASKTDDPQTLRMVAGALANLCGN 521 (660)
Q Consensus 466 --------~~~Aa~AL~nLA~~-~~n~~--------~Ive~g~-------I~~Ll~LL~~s~d~~v~~~Aa~aLanLa~~ 521 (660)
+..+.-|+..|+.. |.-+. .+...|| |.++...++ .+|+....|+..||....+
T Consensus 384 vhD~SD~FKiI~ida~rsLsl~Fp~k~~s~l~FL~~~L~~eGg~eFK~~~Vdaisd~~~--~~p~skEraLe~LC~fIED 461 (898)
T COG5240 384 VHDMSDGFKIIAIDALRSLSLLFPSKKLSYLDFLGSSLLQEGGLEFKKYMVDAISDAME--NDPDSKERALEVLCTFIED 461 (898)
T ss_pred HHhhccCceEEeHHHHHHHHhhCcHHHHHHHHHHHHHHHhcccchHHHHHHHHHHHHHh--hCchHHHHHHHHHHHHHhh
Confidence 22334455555543 33222 2233454 444555554 4677787777777766544
Q ss_pred hhHHHHHHhc-------c--------HHHHHHHHhcCCCHHHHHHHHHHHHHhhccchhhhhhcchhhhHHHhhcChHHH
Q 006114 522 EKLHTMLEED-------G--------AIKALLAMVRSGNIDVIAQVARGLANFAKCESRAIVQGQRKGRSHLMEDSALEW 586 (660)
Q Consensus 522 ~~~r~~iv~~-------G--------~V~~Lv~lL~s~~~~v~~~Al~aLanLA~~~~~~~aq~~~e~r~~Li~~G~v~~ 586 (660)
.+..+..++- | .|.-+..-+--.|.-|+..|+.||.-++..-++. +....+...
T Consensus 462 cey~~I~vrIL~iLG~EgP~a~~P~~yvrhIyNR~iLEN~ivRsaAv~aLskf~ln~~d~-----------~~~~sv~~~ 530 (898)
T COG5240 462 CEYHQITVRILGILGREGPRAKTPGKYVRHIYNRLILENNIVRSAAVQALSKFALNISDV-----------VSPQSVENA 530 (898)
T ss_pred cchhHHHHHHHHHhcccCCCCCCcchHHHHHHHHHHHhhhHHHHHHHHHHHHhccCcccc-----------ccHHHHHHH
Confidence 4444333321 1 1222333333456678888999998887553321 222345567
Q ss_pred HHHhhcCCCHHHHHHHHHHHHHhhcCCccHHHHH---hcCcHHHHHHHH
Q 006114 587 LIANSKTNSASTRRHVELALCHLAQNEDNARDFI---SRGGAKELVQIS 632 (660)
Q Consensus 587 Lv~lL~s~d~~vr~~Aa~AL~nLa~~~e~~~~Iv---e~G~l~~Lv~lL 632 (660)
|.+++++.|+.||..|+.+|.++-....... ++ .-|-+|.|..-+
T Consensus 531 lkRclnD~DdeVRdrAsf~l~~~~~~da~~p-l~~sd~~~dipsle~~l 578 (898)
T COG5240 531 LKRCLNDQDDEVRDRASFLLRNMRLSDACEP-LFSSDELGDIPSLELEL 578 (898)
T ss_pred HHHHhhcccHHHHHHHHHHHHhhhhhhhhhc-cccccccCCcchhHHhh
Confidence 7888999999999999999999864332222 33 345566665444
No 250
>KOG2032 consensus Uncharacterized conserved protein [Function unknown]
Probab=93.15 E-value=1.2 Score=50.09 Aligned_cols=193 Identities=16% Similarity=0.078 Sum_probs=110.4
Q ss_pred hCCCHHHHH-HhhCC---CCHHHHHHHHHHHHHhhCCchhHHHHHHcCCHHHHHHHH-c--cCCCHHHHHHHHHHHHHhh
Q 006114 405 DEVGLPKIL-QLLTS---EDPDVQIHAVKVVANLAAEDINQEKIVEEGGLDALLLLL-R--TSQNTTILRVASGAIANLA 477 (660)
Q Consensus 405 e~ggI~~LV-~LL~s---~d~~vr~~Aa~aL~nLa~~~en~~~Ive~GgI~~Lv~LL-~--~s~d~~v~~~Aa~AL~nLA 477 (660)
+.+-++.++ +++.+ ..+.-+..-...++.+......- +.|.+..++..+ . .+++..++..|+..|+|.+
T Consensus 211 ~~~~~~~il~q~~ss~ts~~~~~ritd~Af~ael~~~~~l~----~~~lL~s~~~~la~ka~dp~a~~r~~a~r~L~~~a 286 (533)
T KOG2032|consen 211 QDLEMGKILAQLLSSITSEKENGRITDIAFFAELKRPKELD----KTGLLGSVLLSLANKATDPSAKSRGMACRGLGNTA 286 (533)
T ss_pred CCccHHHHHhhcccccchhcccchHHHHHHHHHHhCccccc----ccccHHHHHHHHHHhccCchhHHHHHHHHHHHHHh
Confidence 334456655 44432 22333344444444444422111 334444443333 1 2567789999999999999
Q ss_pred cC-chhHHHHHhcCccHHHHHhhcCCCCHHHHHHHHHHHHHHhcChhHHHHHHhccH---HHHHHHHhcCCCHHHHHHHH
Q 006114 478 MN-EMNQGLIMSRGGGQLLAKTASKTDDPQTLRMVAGALANLCGNEKLHTMLEEDGA---IKALLAMVRSGNIDVIAQVA 553 (660)
Q Consensus 478 ~~-~~n~~~Ive~g~I~~Ll~LL~~s~d~~v~~~Aa~aLanLa~~~~~r~~iv~~G~---V~~Lv~lL~s~~~~v~~~Al 553 (660)
.+ |+- ..-...-.+..++.-|.+..+.+|.-.|..+|..+.....+.. +..+. .-.+..+..+.++.++..|.
T Consensus 287 s~~P~k-v~th~~~~ldaii~gL~D~~~~~V~leam~~Lt~v~~~~~~~~--l~~~~l~ialrlR~l~~se~~~~R~aa~ 363 (533)
T KOG2032|consen 287 SGAPDK-VRTHKTTQLDAIIRGLYDDLNEEVQLEAMKCLTMVLEKASNDD--LESYLLNIALRLRTLFDSEDDKMRAAAF 363 (533)
T ss_pred ccCcHH-HHHhHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHHHhhhhcc--hhhhchhHHHHHHHHHHhcChhhhhhHH
Confidence 88 442 2222233456666666676778899999988887763222211 22233 33466667789999999999
Q ss_pred HHHHHhhccchhhhhhcchhhhHHHhh--cChHHHHHHhhcCCCHHHHHHHHHHHHHhhcC
Q 006114 554 RGLANFAKCESRAIVQGQRKGRSHLME--DSALEWLIANSKTNSASTRRHVELALCHLAQN 612 (660)
Q Consensus 554 ~aLanLA~~~~~~~aq~~~e~r~~Li~--~G~v~~Lv~lL~s~d~~vr~~Aa~AL~nLa~~ 612 (660)
..++.|+... +..++..+.+ -+...+++-.+++..+.+-.+ |.+.+..|..
T Consensus 364 ~Lfg~L~~l~-------g~~~e~~Fte~v~k~~~~lllhl~d~~p~va~A-Cr~~~~~c~p 416 (533)
T KOG2032|consen 364 VLFGALAKLA-------GGGWEEFFTEQVKKRLAPLLLHLQDPNPYVARA-CRSELRTCYP 416 (533)
T ss_pred HHHHHHHHHc-------CCCchhhhHHHHHhccccceeeeCCCChHHHHH-HHHHHHhcCc
Confidence 9998887432 2334555553 334445555667777766554 5555554443
No 251
>PF08324 PUL: PUL domain; InterPro: IPR013535 The PUL (after PLAP, UFD3 and lub1) domain is a predicted predominantly alpha helical globular domain found in eukaryotes. It is found in association with either WD repeats (see PDOC00574 from PROSITEDOC) and the PFU domain (see PDOC51394 from PROSITEDOC) or PPPDE and thioredoxin (see PDOC00172 from PROSITEDOC) domains. The PUL domain is a protein-protein interaction domain [, ]. Some proteins known to contain a PUL domain are listed below: Saccharomyces cerevisiae DOA1 (UFD3, ZZZ4), involved in ubiquitin conjugation pathway. DOA1 participates in the regulation of the ubiquitin conjugation pathway involving CDC48 by hindering multiubiquitination of substrates at the CDC48 chaperone. Schizosaccharomyces pombe ubiquitin homeostasis protein lub1, acts as a negative regulator of vacuole-dependent ubiquitin degradation. Mammalian phospholipase A-2-activating protein (PLA2P, PLAA), the homologue of DOA1. PLA2P plays an important role in the regulation of specific inflammatory disease processes. ; PDB: 3EBB_A 3L3F_X 3GAE_B 3PST_A 3PSP_A.
Probab=93.06 E-value=2.3 Score=44.23 Aligned_cols=171 Identities=19% Similarity=0.168 Sum_probs=104.9
Q ss_pred HHHHHHHhhcCchhHHHHHhcC--ccHHHHHhhcC---CCCHHHHHHHHHHHHHHhcChhHHHHHHhccH--HHHHHHHh
Q 006114 469 ASGAIANLAMNEMNQGLIMSRG--GGQLLAKTASK---TDDPQTLRMVAGALANLCGNEKLHTMLEEDGA--IKALLAMV 541 (660)
Q Consensus 469 Aa~AL~nLA~~~~n~~~Ive~g--~I~~Ll~LL~~---s~d~~v~~~Aa~aLanLa~~~~~r~~iv~~G~--V~~Lv~lL 541 (660)
+.-.++-++.++.....+...+ +...+..++.. ...+..+-.++++++|+..++.++..+..... +...+..+
T Consensus 83 ~lDLlRl~~l~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~ml~lR~l~NlF~~~~~~~~~~~~~~~~i~~~~~~~ 162 (268)
T PF08324_consen 83 ALDLLRLAALHPPASDLLASEDSGIADLLSTLISSGSSSSPPANQMLALRLLANLFSHPPGRQLLLSHFDSSILELLSSL 162 (268)
T ss_dssp HHHHHHHHCCCHCHHHHHHSTTTH-HHHHHHHHHCCTTTSSHHHHHHHHHHHHHHTTSCCCHHHHHCTHHTCHHHHCHCC
T ss_pred HHhHHHHHHhCccHHHHHhccccchHHHHHHHHHhccCCCcHHHHHHHHHHHHHhhCCCccHHHHHhcccchHHHHHHHH
Confidence 4444454555555544444322 22333333322 25667777888999999999999988887643 33333333
Q ss_pred cCC----CHHHHHHHHHHHHHhhccchhhhhhcchhhhHHHhhcChHHHHHHhh-cC-CCHHHHHHHHHHHHHhhcCCcc
Q 006114 542 RSG----NIDVIAQVARGLANFAKCESRAIVQGQRKGRSHLMEDSALEWLIANS-KT-NSASTRRHVELALCHLAQNEDN 615 (660)
Q Consensus 542 ~s~----~~~v~~~Al~aLanLA~~~~~~~aq~~~e~r~~Li~~G~v~~Lv~lL-~s-~d~~vr~~Aa~AL~nLa~~~e~ 615 (660)
.+. ++.++..++..+.|++..-.. .....=.....+..++..+ .. .|+.+.-.+..||++|+..+..
T Consensus 163 ~~~~~~~~kn~~~A~ATl~~Nlsv~~~~-------~~~~~~~~~~ll~~i~~~~~~~~~d~Ea~~R~LvAlGtL~~~~~~ 235 (268)
T PF08324_consen 163 LSSLLDSNKNVRIALATLLLNLSVLLHK-------NRSDEEWQSELLSSIIEVLSREESDEEALYRLLVALGTLLSSSDS 235 (268)
T ss_dssp CTTS-HHHHHHHHHHHHHHHHHHHHHHH-------CTS-CCHHHHHHHHHHHHCHCCHTSHHHHHHHHHHHHHHHCCSHH
T ss_pred hhccccccHHHHHHHHHHHHHHHHHHHh-------cCCChHHHHHHHHHHHHHhccccCCHHHHHHHHHHHHHHhccChh
Confidence 333 788999999999999843110 0000000112345555533 22 5788888899999999977766
Q ss_pred HHHHHh-cCcHHHHHHHHhcCChHHHHHHHHH
Q 006114 616 ARDFIS-RGGAKELVQISIESSREDIRNLAKK 646 (660)
Q Consensus 616 ~~~Ive-~G~l~~Lv~lL~s~s~~~ir~~A~~ 646 (660)
...+.. .|+...+.........+.+++.+..
T Consensus 236 ~~~~~~~l~~~~~~~~~~~~~~e~ri~~v~~e 267 (268)
T PF08324_consen 236 AKQLAKSLDVKSVLSKKANKSKEPRIKEVAAE 267 (268)
T ss_dssp HHHHCCCCTHHHHHHHHHHHTTSHHHHHHHHH
T ss_pred HHHHHHHcChHHHHHHHHhcccchHHHHHhcc
Confidence 666665 5677666666666666778777764
No 252
>COG5231 VMA13 Vacuolar H+-ATPase V1 sector, subunit H [Energy production and conversion]
Probab=93.06 E-value=2.1 Score=45.91 Aligned_cols=188 Identities=11% Similarity=0.058 Sum_probs=125.7
Q ss_pred CCCHHHHHHHHHHHHHhhcCchhHHHHHhcCc-cHHHHHhhcCC-CCHHHHHHHHHHHHHHhcChhHHHHHHh-ccHHHH
Q 006114 460 SQNTTILRVASGAIANLAMNEMNQGLIMSRGG-GQLLAKTASKT-DDPQTLRMVAGALANLCGNEKLHTMLEE-DGAIKA 536 (660)
Q Consensus 460 s~d~~v~~~Aa~AL~nLA~~~~n~~~Ive~g~-I~~Ll~LL~~s-~d~~v~~~Aa~aLanLa~~~~~r~~iv~-~G~V~~ 536 (660)
.-++-.+-.|..++.+++..++.|..+-.... -..++.+++++ ++.+++....-+++-++.++...+.+-. ...+.-
T Consensus 160 ~i~~lTrlfav~cl~~l~~~~e~R~i~waentcs~r~~e~l~n~vg~~qlQY~SL~~iw~lTf~~~~aqdi~K~~dli~d 239 (432)
T COG5231 160 LIDFLTRLFAVSCLSNLEFDVEKRKIEWAENTCSRRFMEILQNYVGVKQLQYNSLIIIWILTFSKECAQDIDKMDDLIND 239 (432)
T ss_pred HHHHHHHHHHHHHHhhhhhhHHHHHHHHHHhhHHHHHHHHHHhhhhhhhhHHHHHHHHHHHhcCHHHHHHHHHHHHHHHH
Confidence 34566788899999999999999888876543 34577777654 5578899999999999999888854443 356777
Q ss_pred HHHHhcCC-CHHHHHHHHHHHHHhhccchh-hhhh----c----------------------------------------
Q 006114 537 LLAMVRSG-NIDVIAQVARGLANFAKCESR-AIVQ----G---------------------------------------- 570 (660)
Q Consensus 537 Lv~lL~s~-~~~v~~~Al~aLanLA~~~~~-~~aq----~---------------------------------------- 570 (660)
|+.+++.. -..|.+.||+++.|++.-.|- .+.+ +
T Consensus 240 li~iVk~~~keKV~Rlc~~Iv~n~~dK~pK~~I~~~lll~~~~k~vq~L~erkysDEel~~di~~i~s~l~~~~k~l~~f 319 (432)
T COG5231 240 LIAIVKERAKEKVLRLCCGIVANVLDKSPKGYIFSPLLLNDISKCVQVLLERKYSDEELVIDIERIRSRLVQNTKKLCIF 319 (432)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhcccccchhhhhHhhcchHHHHHHHHhcCCChHHHHHHHHHHHHHHHhhhhhhhHH
Confidence 78887754 456788888888888863321 1100 0
Q ss_pred -----------------------chhhhHHHhhc--ChHHHHHHhhcCCCHH-HHHHHHHHHHHhhc-CCccHHHHHhcC
Q 006114 571 -----------------------QRKGRSHLMED--SALEWLIANSKTNSAS-TRRHVELALCHLAQ-NEDNARDFISRG 623 (660)
Q Consensus 571 -----------------------~~e~r~~Li~~--G~v~~Lv~lL~s~d~~-vr~~Aa~AL~nLa~-~~e~~~~Ive~G 623 (660)
+..+-..+... ..+..|..++++..+. .-..||.-+.++.. .|+....+...|
T Consensus 320 D~Y~~ELdsg~l~wSp~H~~~dFWs~N~d~l~kdny~i~k~L~~~lq~n~~nt~i~vAc~Di~~~Vr~~PE~~~vl~Kyg 399 (432)
T COG5231 320 DNYLNELDSGRLEWSPYHHKKDFWSTNLDMLIKDNYEIVKVLKKYLQSNNPNTWICVACSDIFQLVRASPEINAVLSKYG 399 (432)
T ss_pred HHHHHHHhhCcccCCCcccccCchhhhHHHHhhhhHHHHHHHHHHHhcCCCCceEeeeHhhHHHHHHhCchHHHHHHHhh
Confidence 00122233332 2556677777776555 33445666666654 667788888999
Q ss_pred cHHHHHHHHhcCChHHHHHHHHHHH
Q 006114 624 GAKELVQISIESSREDIRNLAKKTM 648 (660)
Q Consensus 624 ~l~~Lv~lL~s~s~~~ir~~A~~~L 648 (660)
+=..++.++.++++++ +=-|..++
T Consensus 400 ~k~~im~L~nh~d~~V-kfeAl~a~ 423 (432)
T COG5231 400 VKEIIMNLINHDDDDV-KFEALQAL 423 (432)
T ss_pred hHHHHHHHhcCCCchh-hHHHHHHH
Confidence 9999999998766544 44444443
No 253
>PF05557 MAD: Mitotic checkpoint protein; InterPro: IPR008672 This family consists of several eukaryotic mitotic checkpoint (Mitotic arrest deficient or MAD) proteins. The mitotic spindle checkpoint monitors proper attachment of the bipolar spindle to the kinetochores of aligned sister chromatids and causes a cell cycle arrest in prometaphase when failures occur. Multiple components of the mitotic spindle checkpoint have been identified in Saccharomyces cerevisiae and higher eukaryotes. In Saccharomyces cerevisiae, the existence of a Mad1-dependent complex containing Mad2, Mad3, Bub3 and Cdc20 has been demonstrated [].; PDB: 1GO4_F 4DZO_A.
Probab=93.05 E-value=0.027 Score=67.23 Aligned_cols=137 Identities=23% Similarity=0.318 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHhhhhchHHHHHHHHHHHhhHHHHH---HhhhhhhhHHHHhhhhHHHHHHHHHhhhhhhhhhhhh
Q 006114 66 VTQVELLTAKIEMQQKLRENDKYEFEKQLRESQISYDESM---RNLVTRSEFLEKENAHLELEVEKILGELNHQKDQNNL 142 (660)
Q Consensus 66 ~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 142 (660)
..++..|..+++..+.-..-.+.++|++++..+..|.... ..|..+..++......++.++++........+..-
T Consensus 67 k~~l~~Le~e~~~~~~e~~~~~~~le~~~~~l~~~~~~~~~~~~ele~~~~~l~~~~~~le~el~~~~e~~~~~k~~l-- 144 (722)
T PF05557_consen 67 KAQLNQLEYELEQLKQEHERAQLELEKELRELQRQLEREFKRNQELEARLKQLEEREEELEEELEEAEEELEQLKRKL-- 144 (722)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--
Confidence 3344455555555555555567778888777777776643 34455555666666666666666655554433321
Q ss_pred HHHHHHHHHHHhhhhhhhhhhhhhhHHHHHHhhHHHHHHHHHHHHHHHHHHhhhhchHHHHHHHHHHHhhhhh
Q 006114 143 KREKIVQLEISLKNSKQQQLDNSSYQKVLADTTQMYEKKITELIKQLEIEHARSEGAEEQVDTMKKLISDNQK 215 (660)
Q Consensus 143 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~e~~~~~~~~~~~~~l~~~l~~~~~ 215 (660)
..++..| +.+.........+++.++.-++.++...+.+-......++.++..++..+..++.
T Consensus 145 -e~~~~~L----------~~E~~~~~~e~~~~~~~l~~~~~~l~~~~~~~e~~~~~l~~e~~~l~~~le~~~~ 206 (722)
T PF05557_consen 145 -EEEKRRL----------QREKEQLLEEAREEISSLKNELSELERQAENAESQIQSLESELEELKEQLEELQS 206 (722)
T ss_dssp -------------------------------------------------------------------------
T ss_pred -HHHHHHH----------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 1111111 1122222334445556666666666666655555566666666666666666663
No 254
>KOG0804 consensus Cytoplasmic Zn-finger protein BRAP2 (BRCA1 associated protein) [General function prediction only]
Probab=93.03 E-value=2 Score=47.58 Aligned_cols=119 Identities=20% Similarity=0.188 Sum_probs=85.0
Q ss_pred HhhHHHHHHHHHHHH-HHHHHHhhhhchHHHHHHHHHHHhhhhhhHHHHhhhhhHHHHHHhhHHHHHHHHHHHHhhhhhh
Q 006114 173 DTTQMYEKKITELIK-QLEIEHARSEGAEEQVDTMKKLISDNQKSIEQYEMENSTYQKALADTTQLYEKKIAELNKKLED 251 (660)
Q Consensus 173 ~~~~~~~~~~~~l~~-~l~~e~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~ 251 (660)
.--..+|..|.++.+ +|++.+...+..-.+++.|++.++++.. ..+.+.++-+-+--|+..+.|++.+
T Consensus 332 Sqr~y~e~~~~e~~qsqlen~k~~~e~~~~e~~~l~~~~~~~e~-----------~kk~~e~k~~q~q~k~~k~~kel~~ 400 (493)
T KOG0804|consen 332 SQRKYYEQIMSEYEQSQLENQKQYYELLITEADSLKQESSDLEA-----------EKKIVERKLQQLQTKLKKCQKELKE 400 (493)
T ss_pred HHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHhhhhhhhHHHH-----------HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344567788888888 9999999999888999999988888882 3345555666666777788888776
Q ss_pred hhhhhhhhHHhHHHHHHHhhhhhccccchhHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHhh
Q 006114 252 EHACFEGAVEQLDMVKKLLSDYQNSNQGQKEVHELCVKLKETRQLHESAVYEVQTLKSEYKNLLEEK 318 (660)
Q Consensus 252 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~Lk~~Le~e~~~~e~~e~E~~~lks~l~~l~~~~ 318 (660)
+. ++++.|-..|..- ...+++.-+.+.....+.++.++.|+.|+.+|..--
T Consensus 401 ~~-----------E~n~~l~knq~vw-----~~kl~~~~e~~~~~~~s~d~~I~dLqEQlrDlmf~l 451 (493)
T KOG0804|consen 401 ER-----------EENKKLIKNQDVW-----RGKLKELEEREKEALGSKDEKITDLQEQLRDLMFFL 451 (493)
T ss_pred HH-----------HHHHHHHhhHHHH-----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHheeh
Confidence 55 3333333222221 245666667777788888999999999999998743
No 255
>PF06371 Drf_GBD: Diaphanous GTPase-binding Domain; InterPro: IPR010473 Diaphanous-related formins (Drfs) are a family of formin homology (FH) proteins that act as effectors of Rho small GTPases during growth factor-induced cytoskeletal remodelling, stress fibre formation, and cell division []. Drf proteins are characterised by a variety of shared domains: an N-terminal GTPase-binding domain (GBD), formin-homology domains FH1, FH2 (IPR003104 from INTERPRO) and FH3 (IPR010472 from INTERPRO), and a C-terminal conserved Dia-autoregulatory domain (DAD) that binds the GBD. This entry represents the GBD, which is a bifunctional autoinhibitory domain that interacts with and is regulated by activated Rho family members. Mammalian Drf3 contains a CRIB-like motif within its GBD for binding to Cdc42, which is required for Cdc42 to activate and guide Drf3 towards the cell cortex where it remodels the actin skeleton [].; GO: 0003779 actin binding, 0017048 Rho GTPase binding, 0030036 actin cytoskeleton organization; PDB: 3OBV_A 2BNX_A 3EG5_D 2BAP_B 3O4X_B 1Z2C_B 2F31_A.
Probab=92.82 E-value=0.66 Score=45.31 Aligned_cols=80 Identities=18% Similarity=0.243 Sum_probs=62.6
Q ss_pred hHHHHHHhccHHHHHHHHhc---------CCCHHHHHHHHHHHHHhhccchhhhhhcchhhhHHHhh-cChHHHHHHhhc
Q 006114 523 KLHTMLEEDGAIKALLAMVR---------SGNIDVIAQVARGLANFAKCESRAIVQGQRKGRSHLME-DSALEWLIANSK 592 (660)
Q Consensus 523 ~~r~~iv~~G~V~~Lv~lL~---------s~~~~v~~~Al~aLanLA~~~~~~~aq~~~e~r~~Li~-~G~v~~Lv~lL~ 592 (660)
..-..+++.||+..|+.+|. ..+......++.||..|... ..|...++. .+++..|+..+.
T Consensus 98 ~Wv~~Fl~~~G~~~L~~~L~~~~~~~~~~~~~~~~~~~~l~Clkal~n~---------~~G~~~v~~~~~~v~~i~~~L~ 168 (187)
T PF06371_consen 98 SWVQEFLELGGLEALLNVLSKLNKKKEKSEEDIDIEHECLRCLKALMNT---------KYGLEAVLSHPDSVNLIALSLD 168 (187)
T ss_dssp HHHHHH-HHHHHHHHHHHHHHHHTHHCTCTTCHHHHHHHHHHHHHHTSS---------HHHHHHHHCSSSHHHHHHHT--
T ss_pred hHHHHhccCCCHHHHHHHHHHhhhhhhhcchhHHHHHHHHHHHHHHHcc---------HHHHHHHHcCcHHHHHHHHHHC
Confidence 44567888999999999875 14567888899999888853 456666666 789999999999
Q ss_pred CCCHHHHHHHHHHHHHhhc
Q 006114 593 TNSASTRRHVELALCHLAQ 611 (660)
Q Consensus 593 s~d~~vr~~Aa~AL~nLa~ 611 (660)
+.+..++..|...|..+|.
T Consensus 169 s~~~~~r~~~leiL~~lc~ 187 (187)
T PF06371_consen 169 SPNIKTRKLALEILAALCL 187 (187)
T ss_dssp TTSHHHHHHHHHHHHHHHT
T ss_pred CCCHHHHHHHHHHHHHHHC
Confidence 9999999999999998873
No 256
>PF06371 Drf_GBD: Diaphanous GTPase-binding Domain; InterPro: IPR010473 Diaphanous-related formins (Drfs) are a family of formin homology (FH) proteins that act as effectors of Rho small GTPases during growth factor-induced cytoskeletal remodelling, stress fibre formation, and cell division []. Drf proteins are characterised by a variety of shared domains: an N-terminal GTPase-binding domain (GBD), formin-homology domains FH1, FH2 (IPR003104 from INTERPRO) and FH3 (IPR010472 from INTERPRO), and a C-terminal conserved Dia-autoregulatory domain (DAD) that binds the GBD. This entry represents the GBD, which is a bifunctional autoinhibitory domain that interacts with and is regulated by activated Rho family members. Mammalian Drf3 contains a CRIB-like motif within its GBD for binding to Cdc42, which is required for Cdc42 to activate and guide Drf3 towards the cell cortex where it remodels the actin skeleton [].; GO: 0003779 actin binding, 0017048 Rho GTPase binding, 0030036 actin cytoskeleton organization; PDB: 3OBV_A 2BNX_A 3EG5_D 2BAP_B 3O4X_B 1Z2C_B 2F31_A.
Probab=92.77 E-value=1.6 Score=42.60 Aligned_cols=80 Identities=16% Similarity=0.077 Sum_probs=65.7
Q ss_pred hhHHHHHhcCccHHHHHhhcC--------CCCHHHHHHHHHHHHHHhcChhHHHHHHh-ccHHHHHHHHhcCCCHHHHHH
Q 006114 481 MNQGLIMSRGGGQLLAKTASK--------TDDPQTLRMVAGALANLCGNEKLHTMLEE-DGAIKALLAMVRSGNIDVIAQ 551 (660)
Q Consensus 481 ~n~~~Ive~g~I~~Ll~LL~~--------s~d~~v~~~Aa~aLanLa~~~~~r~~iv~-~G~V~~Lv~lL~s~~~~v~~~ 551 (660)
.--..+++.||+..|+.+|.. ..+......++.||..|+.++.+...++. .+++..|+..+.++++.++..
T Consensus 98 ~Wv~~Fl~~~G~~~L~~~L~~~~~~~~~~~~~~~~~~~~l~Clkal~n~~~G~~~v~~~~~~v~~i~~~L~s~~~~~r~~ 177 (187)
T PF06371_consen 98 SWVQEFLELGGLEALLNVLSKLNKKKEKSEEDIDIEHECLRCLKALMNTKYGLEAVLSHPDSVNLIALSLDSPNIKTRKL 177 (187)
T ss_dssp HHHHHH-HHHHHHHHHHHHHHHHTHHCTCTTCHHHHHHHHHHHHHHTSSHHHHHHHHCSSSHHHHHHHT--TTSHHHHHH
T ss_pred hHHHHhccCCCHHHHHHHHHHhhhhhhhcchhHHHHHHHHHHHHHHHccHHHHHHHHcCcHHHHHHHHHHCCCCHHHHHH
Confidence 346677788999999998853 24567888899999999998888888876 699999999999999999999
Q ss_pred HHHHHHHhh
Q 006114 552 VARGLANFA 560 (660)
Q Consensus 552 Al~aLanLA 560 (660)
|+..|+.+|
T Consensus 178 ~leiL~~lc 186 (187)
T PF06371_consen 178 ALEILAALC 186 (187)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHH
Confidence 999999887
No 257
>KOG4535 consensus HEAT and armadillo repeat-containing protein [General function prediction only]
Probab=92.74 E-value=0.24 Score=55.15 Aligned_cols=151 Identities=21% Similarity=0.131 Sum_probs=91.1
Q ss_pred HHHHHHhhCCCCHHHHHHHHHHHHHhhC-----Cch---hHHHHHHcCCHHHHHHHH--ccCCCHHHHHHHHHHHHHhhc
Q 006114 409 LPKILQLLTSEDPDVQIHAVKVVANLAA-----EDI---NQEKIVEEGGLDALLLLL--RTSQNTTILRVASGAIANLAM 478 (660)
Q Consensus 409 I~~LV~LL~s~d~~vr~~Aa~aL~nLa~-----~~e---n~~~Ive~GgI~~Lv~LL--~~s~d~~v~~~Aa~AL~nLA~ 478 (660)
...++..+.+..-.+|..++++++||+. .|. ....+... -+..++..- .+.....|+.+|..+|+|+..
T Consensus 435 a~~il~sl~d~~ln~r~KaawtlgnITdAL~~~~Ps~~s~~eR~sg~-ll~~~~~~A~~~~Ad~dkV~~navraLgnllQ 513 (728)
T KOG4535|consen 435 ANAILMSLEDKSLNVRAKAAWSLGNITDALIVNMPTPDSFQERFSGL-LLLKMLRSAIEASADKDKVKSNAVRALGNLLQ 513 (728)
T ss_pred HHHHHHHhhhHhHhHHHHHHHHhhhhHHHHHcCCCCchHHHHHHHHH-HHHHHHHHHHHhhhhhhhhhhHHHHHHhhHHH
Confidence 3444455556667889999999999875 132 12222211 133333322 112355688899999999865
Q ss_pred C-c----hhHHHHHhcCccHHHHHhhcCCCCHHHHHHHHHHHHHHhcChhHHHH-HH-hccHHHHHHHHhc-CCCHHHHH
Q 006114 479 N-E----MNQGLIMSRGGGQLLAKTASKTDDPQTLRMVAGALANLCGNEKLHTM-LE-EDGAIKALLAMVR-SGNIDVIA 550 (660)
Q Consensus 479 ~-~----~n~~~Ive~g~I~~Ll~LL~~s~d~~v~~~Aa~aLanLa~~~~~r~~-iv-~~G~V~~Lv~lL~-s~~~~v~~ 550 (660)
. . ..-..+. .|.+..++....-.....|+.+||.++.||..++...-. +- ..-+++.|..++. ..|-.|+.
T Consensus 514 vlq~i~~~~~~e~~-~~~~~~l~~~v~~~~~~kV~WNaCya~gNLfkn~a~~lq~~~wA~~~F~~L~~Lv~~~~NFKVRi 592 (728)
T KOG4535|consen 514 FLQPIEKPTFAEII-EESIQALISTVLTEAAMKVRWNACYAMGNLFKNPALPLQTAPWASQAFNALTSLVTSCKNFKVRI 592 (728)
T ss_pred HHHHhhhccHHHHH-HHHHHhcccceecccccccchHHHHHHHHhhcCccccccCCCchHHHHHHHHHHHHHhccceEee
Confidence 4 1 1111222 233333333222235668999999999999987765211 11 2246778888876 67889999
Q ss_pred HHHHHHHHhhc
Q 006114 551 QVARGLANFAK 561 (660)
Q Consensus 551 ~Al~aLanLA~ 561 (660)
+|+.+|..-+.
T Consensus 593 ~AA~aL~vp~~ 603 (728)
T KOG4535|consen 593 RAAAALSVPGK 603 (728)
T ss_pred hhhhhhcCCCC
Confidence 99999976554
No 258
>PF10473 CENP-F_leu_zip: Leucine-rich repeats of kinetochore protein Cenp-F/LEK1; InterPro: IPR019513 Cenp-F, a centromeric kinetochore, microtubule-binding protein consisting of two 1,600-amino acid-long coils, is essential for the full functioning of the mitotic checkpoint pathway [, ]. There are several leucine-rich repeats along the sequence of LEK1 that are considered to be zippers, though they do not appear to be binding DNA directly in this instance []. ; GO: 0008134 transcription factor binding, 0042803 protein homodimerization activity, 0045502 dynein binding
Probab=92.72 E-value=9.4 Score=36.37 Aligned_cols=94 Identities=15% Similarity=0.182 Sum_probs=55.0
Q ss_pred hhhhHHHHHHHHHHHhhhhhhhhhhhhhhHHHHHHhhHHHHHHHHHHHHHHHHHHhhhhchHHHHHHHHHHHhhhhhhHH
Q 006114 139 QNNLKREKIVQLEISLKNSKQQQLDNSSYQKVLADTTQMYEKKITELIKQLEIEHARSEGAEEQVDTMKKLISDNQKSIE 218 (660)
Q Consensus 139 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~e~~~~~~~~~~~~~l~~~l~~~~~~~~ 218 (660)
.+..+.+++-.||.+|..+...+..-...-...-.++..++-+|..+-..+..=.+--..+..+-..|.+.+.+.|..+.
T Consensus 18 e~dsle~~v~~LEreLe~~q~~~e~~~~daEn~k~eie~L~~el~~lt~el~~L~~EL~~l~sEk~~L~k~lq~~q~kv~ 97 (140)
T PF10473_consen 18 EKDSLEDHVESLERELEMSQENKECLILDAENSKAEIETLEEELEELTSELNQLELELDTLRSEKENLDKELQKKQEKVS 97 (140)
T ss_pred hHhhHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44456666666666666666665555555555555666666666666665555555555555555555556655555555
Q ss_pred HHhhhhhHHHHHHh
Q 006114 219 QYEMENSTYQKALA 232 (660)
Q Consensus 219 ~~~~~~~~~~~~l~ 232 (660)
..+.-|+++..-|.
T Consensus 98 eLE~~~~~~~~~l~ 111 (140)
T PF10473_consen 98 ELESLNSSLENLLQ 111 (140)
T ss_pred HHHHHhHHHHHHHH
Confidence 55555555555443
No 259
>PF08045 CDC14: Cell division control protein 14, SIN component; InterPro: IPR012535 Cdc14 is a component of the septation initiation network (SIN) and is required for the localisation and activity of Sid1. Sid1 is a protein kinase that localises asymmetrically to one spindle pole body (SPB) in anaphase disappears prior to cell separation [], [].
Probab=92.68 E-value=1.8 Score=45.31 Aligned_cols=99 Identities=13% Similarity=0.166 Sum_probs=80.4
Q ss_pred HHHHHHHHHHHhh-cCchhHHHHHhcCccHHHHHhhcCCCCHHHHHHHHHHHHHH-hcChhHHHHHHhccHHHHHHHHhc
Q 006114 465 ILRVASGAIANLA-MNEMNQGLIMSRGGGQLLAKTASKTDDPQTLRMVAGALANL-CGNEKLHTMLEEDGAIKALLAMVR 542 (660)
Q Consensus 465 v~~~Aa~AL~nLA-~~~~n~~~Ive~g~I~~Ll~LL~~s~d~~v~~~Aa~aLanL-a~~~~~r~~iv~~G~V~~Lv~lL~ 542 (660)
....|..+|--++ -||+.+..+....++..++.+|..+.++.++..+..+|..+ ..+|.+...+-+.||+..++.+++
T Consensus 107 li~~aL~vLQGl~LLHp~Sr~lF~r~~~m~lll~LL~~~~~~~i~~a~L~tLv~iLld~p~N~r~FE~~~Gl~~v~~llk 186 (257)
T PF08045_consen 107 LIALALRVLQGLCLLHPPSRKLFHREQNMELLLDLLSPSNPPAIQSACLDTLVCILLDSPENQRDFEELNGLSTVCSLLK 186 (257)
T ss_pred HHHHHHHHHHHHHHcCchHHHHHhhhhhHHHHHHHhccCCCchHHHHHHHHHHHHHHcChHHHHHHHHhCCHHHHHHHHc
Confidence 3455667777776 46999999999999999999996566788888888665544 588999999999999999999998
Q ss_pred C--CCHHHHHHHHHHHHHhhccc
Q 006114 543 S--GNIDVIAQVARGLANFAKCE 563 (660)
Q Consensus 543 s--~~~~v~~~Al~aLanLA~~~ 563 (660)
+ .+.+++..++..|.-...+.
T Consensus 187 ~~~~~~~~r~K~~EFL~fyl~~E 209 (257)
T PF08045_consen 187 SKSTDRELRLKCIEFLYFYLMPE 209 (257)
T ss_pred cccccHHHhHHHHHHHHHHHccc
Confidence 4 56788888888888766554
No 260
>COG5215 KAP95 Karyopherin (importin) beta [Intracellular trafficking and secretion]
Probab=92.49 E-value=2.5 Score=48.40 Aligned_cols=162 Identities=12% Similarity=0.002 Sum_probs=97.4
Q ss_pred HHhCCCHHHHHHhh----CCCCHHHHHHHHHHHHHhhCCchh-HHHHHHcCCHHHHHHHHccCCCHHHHHHHHHHHHHhh
Q 006114 403 ICDEVGLPKILQLL----TSEDPDVQIHAVKVVANLAAEDIN-QEKIVEEGGLDALLLLLRTSQNTTILRVASGAIANLA 477 (660)
Q Consensus 403 I~e~ggI~~LV~LL----~s~d~~vr~~Aa~aL~nLa~~~en-~~~Ive~GgI~~Lv~LL~~s~d~~v~~~Aa~AL~nLA 477 (660)
+.+...+.+++.+. ++++-.-|..|+.+++.+...|.- +..-.-..++|.+..+.. ++.--++..++||++.|+
T Consensus 358 ~~gd~i~~pVl~FvEqni~~~~w~nreaavmAfGSvm~gp~~~~lT~~V~qalp~i~n~m~-D~~l~vk~ttAwc~g~ia 436 (858)
T COG5215 358 LKGDKIMRPVLGFVEQNIRSESWANREAAVMAFGSVMHGPCEDCLTKIVPQALPGIENEMS-DSCLWVKSTTAWCFGAIA 436 (858)
T ss_pred HhhhHhHHHHHHHHHHhccCchhhhHHHHHHHhhhhhcCccHHHHHhhHHhhhHHHHHhcc-cceeehhhHHHHHHHHHH
Confidence 34444556655554 578888899999999998885433 333333457899988886 666678888999999997
Q ss_pred cCchhHHHHHhcCccHHHHHhhcC--CCCHHHHHHHHHHHHHHh-cChhHH---HHHHh---ccHHHHHHHHhc--CCCH
Q 006114 478 MNEMNQGLIMSRGGGQLLAKTASK--TDDPQTLRMVAGALANLC-GNEKLH---TMLEE---DGAIKALLAMVR--SGNI 546 (660)
Q Consensus 478 ~~~~n~~~Ive~g~I~~Ll~LL~~--s~d~~v~~~Aa~aLanLa-~~~~~r---~~iv~---~G~V~~Lv~lL~--s~~~ 546 (660)
.+ ....|-.+|-++..+.-+.- ..+|.+..+++|...||+ +.++.- ..++. ...+..|+..-. ..+.
T Consensus 437 d~--va~~i~p~~Hl~~~vsa~liGl~D~p~~~~ncsw~~~nlv~h~a~a~~~~~S~l~~fY~ai~~~Lv~~t~~~~Ne~ 514 (858)
T COG5215 437 DH--VAMIISPCGHLVLEVSASLIGLMDCPFRSINCSWRKENLVDHIAKAVREVESFLAKFYLAILNALVKGTELALNES 514 (858)
T ss_pred HH--HHHhcCccccccHHHHHHHhhhhccchHHhhhHHHHHhHHHhhhhhhccccchhHHHHHHHHHHHHHHHHhhccch
Confidence 65 11233345555443332211 247788889999999997 333221 11111 112223333221 3445
Q ss_pred HHHHHHHHHHHHhhccchhhh
Q 006114 547 DVIAQVARGLANFAKCESRAI 567 (660)
Q Consensus 547 ~v~~~Al~aLanLA~~~~~~~ 567 (660)
..+..+..+|+.+....+++.
T Consensus 515 n~R~s~fsaLgtli~~~~d~V 535 (858)
T COG5215 515 NLRVSLFSALGTLILICPDAV 535 (858)
T ss_pred hHHHHHHHHHHHHHhhcchhH
Confidence 677777777777665544443
No 261
>PF09730 BicD: Microtubule-associated protein Bicaudal-D; InterPro: IPR018477 BicD proteins consist of three coiled-coiled domains and are involved in dynein-mediated minus end-directed transport from the Golgi apparatus to the endoplasmic reticulum (ER) []. Glycogen synthase kinase-3beta (GSK-3beta) is required for the binding of BICD to dynein but not to dynactin, acting to maintain the anchoring of microtubules to the centromere []. It appears that amino-acid residues 437-617 of BicD and the kinase activity of GSK-3 are necessary for the formation of a complex between BicD and GSK-3beta in intact cells [].; GO: 0006810 transport, 0005794 Golgi apparatus
Probab=92.45 E-value=8.9 Score=45.71 Aligned_cols=58 Identities=21% Similarity=0.247 Sum_probs=50.5
Q ss_pred HHhhhhhhhHHHHhhhhHHHHHHHHHhhhhhhhhhhhhHHHHHHHHHHHhhhhhhhhh
Q 006114 105 MRNLVTRSEFLEKENAHLELEVEKILGELNHQKDQNNLKREKIVQLEISLKNSKQQQL 162 (660)
Q Consensus 105 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 162 (660)
|.+|+.+..-+++|+..|...+++.-..|.+-++.-+.+.+++..|-..++-....+.
T Consensus 267 iqKL~qQL~qve~EK~~L~~~L~e~Q~qLe~a~~als~q~eki~~L~e~l~aL~~l~~ 324 (717)
T PF09730_consen 267 IQKLKQQLLQVEREKSSLLSNLQESQKQLEHAQGALSEQQEKINRLTEQLDALRKLQE 324 (717)
T ss_pred HHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcc
Confidence 6778888889999999999999999999999999999999999999877777666433
No 262
>KOG1824 consensus TATA-binding protein-interacting protein [General function prediction only]
Probab=92.40 E-value=3.8 Score=49.37 Aligned_cols=223 Identities=16% Similarity=0.135 Sum_probs=117.1
Q ss_pred CCHHHHHHhhCCCCHHHHHHHHHHHHHhhC-CchhH-HHHHHcCCHHHHHHHHccCCCHHHHH-HHHHHHHHhhcCchhH
Q 006114 407 VGLPKILQLLTSEDPDVQIHAVKVVANLAA-EDINQ-EKIVEEGGLDALLLLLRTSQNTTILR-VASGAIANLAMNEMNQ 483 (660)
Q Consensus 407 ggI~~LV~LL~s~d~~vr~~Aa~aL~nLa~-~~en~-~~Ive~GgI~~Lv~LL~~s~d~~v~~-~Aa~AL~nLA~~~~n~ 483 (660)
..+..|+.+|...+.+||.-|++.|+-|+. -++.+ ..++ ..|..-+-++.+. .+. .+.+...-++.-|+..
T Consensus 47 kvv~~lLklL~D~ngEVQnlAVKClg~lvsKvke~~le~~v-----e~L~~~~~s~keq-~rdissi~Lktvi~nl~P~~ 120 (1233)
T KOG1824|consen 47 KVVKMLLKLLEDKNGEVQNLAVKCLGPLVSKVKEDQLETIV-----ENLCSNMLSGKEQ-LRDISSIGLKTVIANLPPSS 120 (1233)
T ss_pred HHHHHHHHHHhccCcHHHHHHHHHHHHHHhhchHHHHHHHH-----HHHhhhhccchhh-hccHHHHHHHHHHhcCCCcc
Confidence 346678889999999999999999998886 33332 2222 2222221112222 222 2333333333334433
Q ss_pred HHHHhcCccHHHHHhhcC----C-CCHHHHHHHHHHHHHHh-cChhHHHHHHhccHHHHHHHHhcCCCHHHHHHHHHHHH
Q 006114 484 GLIMSRGGGQLLAKTASK----T-DDPQTLRMVAGALANLC-GNEKLHTMLEEDGAIKALLAMVRSGNIDVIAQVARGLA 557 (660)
Q Consensus 484 ~~Ive~g~I~~Ll~LL~~----s-~d~~v~~~Aa~aLanLa-~~~~~r~~iv~~G~V~~Lv~lL~s~~~~v~~~Al~aLa 557 (660)
.......+++.+...+.. . +...++..++-.++-+- .....-.. ...+.+..++.-+.++...|+..|+.+|+
T Consensus 121 ~~~la~tV~~~~t~~l~~~i~~qe~~sai~~e~lDil~d~lsr~g~ll~~-fh~~il~~l~~ql~s~R~aVrKkai~~l~ 199 (1233)
T KOG1824|consen 121 SSFLAATVCKRITPKLKQAISKQEDVSAIKCEVLDILADVLSRFGTLLPN-FHLSILKCLLPQLQSPRLAVRKKAITALG 199 (1233)
T ss_pred ccccccHHHHHHHHHHHHHhhhcccchhhHHHHHHHHHHHHHhhcccCcc-hHHHHHHHHhhcccChHHHHHHHHHHHHH
Confidence 333444444554444432 1 22235555554444322 11111111 22355666777777888999999999999
Q ss_pred HhhccchhhhhhcchhhhHHHhhcChHHHHHHhhcC-CCHHHHHHHHHHHHHhhcCCccHHHHHhcCcHHHHHHHHhc--
Q 006114 558 NFAKCESRAIVQGQRKGRSHLMEDSALEWLIANSKT-NSASTRRHVELALCHLAQNEDNARDFISRGGAKELVQISIE-- 634 (660)
Q Consensus 558 nLA~~~~~~~aq~~~e~r~~Li~~G~v~~Lv~lL~s-~d~~vr~~Aa~AL~nLa~~~e~~~~Ive~G~l~~Lv~lL~s-- 634 (660)
.++...++ ..=.+.+..|++-|.. .....-+.-..+|..+|.....+..---...+|.+..+...
T Consensus 200 ~la~~~~~------------~ly~~li~~Ll~~L~~~~q~~~~rt~Iq~l~~i~r~ag~r~~~h~~~ivp~v~~y~~~~e 267 (1233)
T KOG1824|consen 200 HLASSCNR------------DLYVELIEHLLKGLSNRTQMSATRTYIQCLAAICRQAGHRFGSHLDKIVPLVADYCNKIE 267 (1233)
T ss_pred HHHHhcCH------------HHHHHHHHHHHhccCCCCchHHHHHHHHHHHHHHHHhcchhhcccchhhHHHHHHhcccc
Confidence 99865332 1113455556655544 33444444566677776655443222234466666666632
Q ss_pred CChHHHHHHHHHHH
Q 006114 635 SSREDIRNLAKKTM 648 (660)
Q Consensus 635 ~s~~~ir~~A~~~L 648 (660)
.+++.+|+.+...|
T Consensus 268 ~~dDELrE~~lQal 281 (1233)
T KOG1824|consen 268 EDDDELREYCLQAL 281 (1233)
T ss_pred cCcHHHHHHHHHHH
Confidence 24445666665433
No 263
>KOG0414 consensus Chromosome condensation complex Condensin, subunit D2 [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning]
Probab=92.28 E-value=0.81 Score=55.93 Aligned_cols=131 Identities=19% Similarity=0.237 Sum_probs=96.8
Q ss_pred cHHHHHhhcC---CCCHHHHHHHHHHHHHHh-cChhHHHHHHhccHHHHHHHHhc-CCCHHHHHHHHHHHHHhhccchhh
Q 006114 492 GQLLAKTASK---TDDPQTLRMVAGALANLC-GNEKLHTMLEEDGAIKALLAMVR-SGNIDVIAQVARGLANFAKCESRA 566 (660)
Q Consensus 492 I~~Ll~LL~~---s~d~~v~~~Aa~aLanLa-~~~~~r~~iv~~G~V~~Lv~lL~-s~~~~v~~~Al~aLanLA~~~~~~ 566 (660)
.|.++.+.++ +.+|.++.+|.-||+.++ .+.+.+. ..+|.|+.+|. +++|.++.+++.+++-||.+-|.-
T Consensus 921 ~piv~e~c~n~~~~sdp~Lq~AAtLaL~klM~iSa~fce-----s~l~llftimeksp~p~IRsN~VvalgDlav~fpnl 995 (1251)
T KOG0414|consen 921 APIVVEGCRNPGLFSDPELQAAATLALGKLMCISAEFCE-----SHLPLLFTIMEKSPSPRIRSNLVVALGDLAVRFPNL 995 (1251)
T ss_pred HHHHHHHhcCCCcCCCHHHHHHHHHHHHHHhhhhHHHHH-----HHHHHHHHHHhcCCCceeeecchheccchhhhcccc
Confidence 4445555533 368999999999998875 4443333 35788889887 899999999999999998765431
Q ss_pred hhhcchhhhHHHhhcChHHHHHHhhcCCCHHHHHHHHHHHHHhhcCCccHHHHHhcCcHHHHHHHHhcCChHHHHHHHH
Q 006114 567 IVQGQRKGRSHLMEDSALEWLIANSKTNSASTRRHVELALCHLAQNEDNARDFISRGGAKELVQISIESSREDIRNLAK 645 (660)
Q Consensus 567 ~aq~~~e~r~~Li~~G~v~~Lv~lL~s~d~~vr~~Aa~AL~nLa~~~e~~~~Ive~G~l~~Lv~lL~s~s~~~ir~~A~ 645 (660)
-+-+-+.|.+.|.+.++.||+.|..+|.+|-.+. .|-=-|.++.+...+-++ .+.++..|+
T Consensus 996 -------------ie~~T~~Ly~rL~D~~~~vRkta~lvlshLILnd----miKVKGql~eMA~cl~D~-~~~IsdlAk 1056 (1251)
T KOG0414|consen 996 -------------IEPWTEHLYRRLRDESPSVRKTALLVLSHLILND----MIKVKGQLSEMALCLEDP-NAEISDLAK 1056 (1251)
T ss_pred -------------cchhhHHHHHHhcCccHHHHHHHHHHHHHHHHhh----hhHhcccHHHHHHHhcCC-cHHHHHHHH
Confidence 1235567778899999999999999999997654 233467888888888654 456788887
No 264
>KOG2062 consensus 26S proteasome regulatory complex, subunit RPN2/PSMD1 [Posttranslational modification, protein turnover, chaperones]
Probab=92.24 E-value=0.98 Score=52.83 Aligned_cols=131 Identities=20% Similarity=0.144 Sum_probs=83.9
Q ss_pred HHHHH-HhhCCCCHHHHHHHHHHHHHhhCCchhHHHHHHcCCHHHHHHHHccCCCHHHHHHHHHHHHHhhcC-chhHHHH
Q 006114 409 LPKIL-QLLTSEDPDVQIHAVKVVANLAAEDINQEKIVEEGGLDALLLLLRTSQNTTILRVASGAIANLAMN-EMNQGLI 486 (660)
Q Consensus 409 I~~LV-~LL~s~d~~vr~~Aa~aL~nLa~~~en~~~Ive~GgI~~Lv~LL~~s~d~~v~~~Aa~AL~nLA~~-~~n~~~I 486 (660)
...++ .++.+.|+.+|.....+++ ++..-. ...++|..|++.--++.|.+|++.|..+|+-++.. |+
T Consensus 520 Ad~lI~el~~dkdpilR~~Gm~t~a-lAy~GT-----gnnkair~lLh~aVsD~nDDVrRaAVialGFVl~~dp~----- 588 (929)
T KOG2062|consen 520 ADPLIKELLRDKDPILRYGGMYTLA-LAYVGT-----GNNKAIRRLLHVAVSDVNDDVRRAAVIALGFVLFRDPE----- 588 (929)
T ss_pred hHHHHHHHhcCCchhhhhhhHHHHH-HHHhcc-----CchhhHHHhhcccccccchHHHHHHHHHheeeEecChh-----
Confidence 33444 4445556666655544442 111000 01235777777755578889999999999977654 55
Q ss_pred HhcCccHHHHHhhcCCCCHHHHHHHHHHHHHHhcChhHHHHHHhccHHHHHHHHhcCCCHHHHHHHHHHHHHhh
Q 006114 487 MSRGGGQLLAKTASKTDDPQTLRMVAGALANLCGNEKLHTMLEEDGAIKALLAMVRSGNIDVIAQVARGLANFA 560 (660)
Q Consensus 487 ve~g~I~~Ll~LL~~s~d~~v~~~Aa~aLanLa~~~~~r~~iv~~G~V~~Lv~lL~s~~~~v~~~Al~aLanLA 560 (660)
.+|..+.+|+.+-+|-|+.-|+.+|.-.|....++. ++..|-.++..+..-|+.-|+-+++.|-
T Consensus 589 ----~~~s~V~lLses~N~HVRyGaA~ALGIaCAGtG~~e------Ai~lLepl~~D~~~fVRQgAlIa~amIm 652 (929)
T KOG2062|consen 589 ----QLPSTVSLLSESYNPHVRYGAAMALGIACAGTGLKE------AINLLEPLTSDPVDFVRQGALIALAMIM 652 (929)
T ss_pred ----hchHHHHHHhhhcChhhhhhHHHHHhhhhcCCCcHH------HHHHHhhhhcChHHHHHHHHHHHHHHHH
Confidence 678888899888999999999999987775433332 3444445555555667777777777664
No 265
>COG5218 YCG1 Chromosome condensation complex Condensin, subunit G [Chromatin structure and dynamics / Cell division and chromosome partitioning]
Probab=92.16 E-value=5.5 Score=45.83 Aligned_cols=115 Identities=17% Similarity=0.165 Sum_probs=79.1
Q ss_pred CCHHHHHHhhCCCCHHHHHHHHHHHHHhhCCchhHHHHHHcCCHHHHHHHHccCCCHHHHHHHHHHHHHhhcCchhHHHH
Q 006114 407 VGLPKILQLLTSEDPDVQIHAVKVVANLAAEDINQEKIVEEGGLDALLLLLRTSQNTTILRVASGAIANLAMNEMNQGLI 486 (660)
Q Consensus 407 ggI~~LV~LL~s~d~~vr~~Aa~aL~nLa~~~en~~~Ive~GgI~~Lv~LL~~s~d~~v~~~Aa~AL~nLA~~~~n~~~I 486 (660)
|.+..+++.+.+++-.||..++.+|+-++..-.-.......|-+..|..-+- +..+.|+..|..+|+.+-....|-+..
T Consensus 91 ~~~~h~lRg~eskdk~VR~r~lqila~~~d~v~eIDe~l~N~L~ekl~~R~~-DRE~~VR~eAv~~L~~~Qe~~~neen~ 169 (885)
T COG5218 91 GTFYHLLRGTESKDKKVRKRSLQILALLSDVVREIDEVLANGLLEKLSERLF-DREKAVRREAVKVLCYYQEMELNEENR 169 (885)
T ss_pred HHHHHHHhcccCcchhHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHh-cchHHHHHHHHHHHHHHHhccCChHHH
Confidence 5677788888899999999999999887764433344555666777777665 668889999999998875332222111
Q ss_pred HhcCccHHHHHhhcCCCCHHHHHHHHHHHHHHhcChhHHHHHH
Q 006114 487 MSRGGGQLLAKTASKTDDPQTLRMVAGALANLCGNEKLHTMLE 529 (660)
Q Consensus 487 ve~g~I~~Ll~LL~~s~d~~v~~~Aa~aLanLa~~~~~r~~iv 529 (660)
+...|+.++.+.|+.+|++. ++.|+..++.....++
T Consensus 170 ----~~n~l~~~vqnDPS~EVRr~---allni~vdnsT~p~Il 205 (885)
T COG5218 170 ----IVNLLKDIVQNDPSDEVRRL---ALLNISVDNSTYPCIL 205 (885)
T ss_pred ----HHHHHHHHHhcCcHHHHHHH---HHHHeeeCCCcchhHH
Confidence 23467777777777788874 4567776555544443
No 266
>COG5215 KAP95 Karyopherin (importin) beta [Intracellular trafficking and secretion]
Probab=92.15 E-value=5.5 Score=45.74 Aligned_cols=207 Identities=11% Similarity=0.018 Sum_probs=126.1
Q ss_pred HhhCCCCHHHHHHHHHHHHHhhC-C-chhHHHHHHcCCHHHHHHHHccCCCHHHHHHHHHHHHHhhcCchhHHHHHhcCc
Q 006114 414 QLLTSEDPDVQIHAVKVVANLAA-E-DINQEKIVEEGGLDALLLLLRTSQNTTILRVASGAIANLAMNEMNQGLIMSRGG 491 (660)
Q Consensus 414 ~LL~s~d~~vr~~Aa~aL~nLa~-~-~en~~~Ive~GgI~~Lv~LL~~s~d~~v~~~Aa~AL~nLA~~~~n~~~Ive~g~ 491 (660)
+.|.++.+..-..|+.+++.|+. + |.+. -.|.+..++..........++..+.++++++|........+...+.
T Consensus 101 ~aL~s~epr~~~~Aaql~aaIA~~Elp~~~----wp~lm~~mv~nvg~eqp~~~k~~sl~~~gy~ces~~Pe~li~~sN~ 176 (858)
T COG5215 101 RALKSPEPRFCTMAAQLLAAIARMELPNSL----WPGLMEEMVRNVGDEQPVSGKCESLGICGYHCESEAPEDLIQMSNV 176 (858)
T ss_pred HHhcCCccHHHHHHHHHHHHHHHhhCcccc----chHHHHHHHHhccccCchHhHHHHHHHHHHHhhccCHHHHHHHhhH
Confidence 66677778788889999988887 2 2221 1222344444444445567888999999999987444444444333
Q ss_pred --cHHHHHhhcCCCCHHHHHHHHHHHHHHhcChhHHHHHHhccHHH----HHHHHhcCCCHHHHHHHHHHHHHhhccchh
Q 006114 492 --GQLLAKTASKTDDPQTLRMVAGALANLCGNEKLHTMLEEDGAIK----ALLAMVRSGNIDVIAQVARGLANFAKCESR 565 (660)
Q Consensus 492 --I~~Ll~LL~~s~d~~v~~~Aa~aLanLa~~~~~r~~iv~~G~V~----~Lv~lL~s~~~~v~~~Al~aLanLA~~~~~ 565 (660)
+..+..-++...+..++..|.++|.+-+. ..+.-+...|-.. ..++.-.+++.+++..|..||..|..-.-
T Consensus 177 il~aiv~ga~k~et~~avRLaaL~aL~dsl~--fv~~nf~~E~erNy~mqvvceatq~~d~e~q~aafgCl~kim~LyY- 253 (858)
T COG5215 177 ILFAIVMGALKNETTSAVRLAALKALMDSLM--FVQGNFCYEEERNYFMQVVCEATQGNDEELQHAAFGCLNKIMMLYY- 253 (858)
T ss_pred HHHHHHHhhcccCchHHHHHHHHHHHHHHHH--HHHHhhcchhhhchhheeeehhccCCcHHHHHHHHHHHHHHHHHHH-
Confidence 23344455555677888888899987331 1222333333333 34455568899999999999887763211
Q ss_pred hhhhcchhhhHHHhhcChHHHHHHhhcCCCHHHHHHHHHHHHHhhcCC-ccHHHHH----------------hcCcHHHH
Q 006114 566 AIVQGQRKGRSHLMEDSALEWLIANSKTNSASTRRHVELALCHLAQNE-DNARDFI----------------SRGGAKEL 628 (660)
Q Consensus 566 ~~aq~~~e~r~~Li~~G~v~~Lv~lL~s~d~~vr~~Aa~AL~nLa~~~-e~~~~Iv----------------e~G~l~~L 628 (660)
.-.. ...+.-........+.+.++.|...|...-..+|... +....+. -.+++|.|
T Consensus 254 ------~fm~-~ymE~aL~alt~~~mks~nd~va~qavEfWsticeEeid~~~e~~~~pe~p~qn~~fa~aav~dvlP~l 326 (858)
T COG5215 254 ------KFMQ-SYMENALAALTGRFMKSQNDEVAIQAVEFWSTICEEEIDGEMEDKYLPEVPAQNHGFARAAVADVLPEL 326 (858)
T ss_pred ------HHHH-HHHHHHHHHHHHHHhcCcchHHHHHHHHHHHHHHHHHhhhHHHHhhcccCchhhcchHHHHHHHHHHHH
Confidence 1111 2233334455567788899999888877665555432 2111111 23478999
Q ss_pred HHHHhc
Q 006114 629 VQISIE 634 (660)
Q Consensus 629 v~lL~s 634 (660)
+.++..
T Consensus 327 L~LL~~ 332 (858)
T COG5215 327 LSLLEK 332 (858)
T ss_pred HHHHHh
Confidence 999975
No 267
>PF02985 HEAT: HEAT repeat; InterPro: IPR000357 The HEAT repeat is a tandemly repeated, 37-47 amino acid long module occurring in a number of cytoplasmic proteins, including the four name-giving proteins huntingtin, elongation factor 3 (EF3), the 65 Kd alpha regulatory subunit of protein phosphatase 2A (PP2A) and the yeast PI3-kinase TOR1 []. Arrays of HEAT repeats consists of 3 to 36 units forming a rod-like helical structure and appear to function as protein-protein interaction surfaces. It has been noted that many HEAT repeat-containing proteins are involved in intracellular transport processes. In the crystal structure of PP2A PR65/A [], the HEAT repeats consist of pairs of antiparallel alpha helices [].; GO: 0005515 protein binding; PDB: 3FGA_A 2PF4_C 2IAE_A 2BKU_D 3EA5_B 3ND2_A 2BPT_A 2NYL_A 2NPP_D 2PKG_B ....
Probab=92.00 E-value=0.25 Score=34.26 Aligned_cols=30 Identities=20% Similarity=0.192 Sum_probs=26.0
Q ss_pred hHHHHHHhhcCCCHHHHHHHHHHHHHhhcC
Q 006114 583 ALEWLIANSKTNSASTRRHVELALCHLAQN 612 (660)
Q Consensus 583 ~v~~Lv~lL~s~d~~vr~~Aa~AL~nLa~~ 612 (660)
.+|.++.++.++++.||..|+.+|..++.+
T Consensus 1 llp~l~~~l~D~~~~VR~~a~~~l~~i~~~ 30 (31)
T PF02985_consen 1 LLPILLQLLNDPSPEVRQAAAECLGAIAEH 30 (31)
T ss_dssp HHHHHHHHHT-SSHHHHHHHHHHHHHHHHT
T ss_pred CHHHHHHHcCCCCHHHHHHHHHHHHHHHhh
Confidence 378899999999999999999999998754
No 268
>PF13764 E3_UbLigase_R4: E3 ubiquitin-protein ligase UBR4
Probab=91.46 E-value=6.6 Score=47.44 Aligned_cols=177 Identities=14% Similarity=0.187 Sum_probs=107.7
Q ss_pred HHHcCCHHHHHHHHccCC----CHHHHHHHHHHHHHhhcCchhHHHHHhcCccHHHHHhhcC---CCC----HHHHHHHH
Q 006114 444 IVEEGGLDALLLLLRTSQ----NTTILRVASGAIANLAMNEMNQGLIMSRGGGQLLAKTASK---TDD----PQTLRMVA 512 (660)
Q Consensus 444 Ive~GgI~~Lv~LL~~s~----d~~v~~~Aa~AL~nLA~~~~n~~~Ive~g~I~~Ll~LL~~---s~d----~~v~~~Aa 512 (660)
+.++||+..|+.++.+.. +..+.......|..++..+.||..++..|+++.|+..+.. .+. +.+.....
T Consensus 113 ~~~~gGL~~ll~~l~~~~~~~~~~~ll~~llkLL~~c~Kv~~NR~~Ll~~~al~~LL~~L~~~l~~~~~~~~~~i~E~LL 192 (802)
T PF13764_consen 113 LAECGGLEVLLSRLDSIRDFSRGRELLQVLLKLLRYCCKVKVNRRALLELNALNRLLSVLNRALQANQNSSQAEIAEQLL 192 (802)
T ss_pred hhcCCCHHHHHHHHHhhccccCcHHHHHHHHHHHHHHHhhHHHHHHHHHcCCHHHHHHHHHHHHhCccccccchHHHHHH
Confidence 457899999999997533 3456667788888888889999999999999999998842 122 34444444
Q ss_pred HHHHHHh---cChhHHHH--HHhcc--------HHHHHHHHhcC----CCHHHHHHHHHHHHHhhccchhhhhhcchhhh
Q 006114 513 GALANLC---GNEKLHTM--LEEDG--------AIKALLAMVRS----GNIDVIAQVARGLANFAKCESRAIVQGQRKGR 575 (660)
Q Consensus 513 ~aLanLa---~~~~~r~~--iv~~G--------~V~~Lv~lL~s----~~~~v~~~Al~aLanLA~~~~~~~aq~~~e~r 575 (660)
..+-.+. ........ ..... -+..+++.+.+ .++.+....+++|.+|+.++.+...
T Consensus 193 ~IiE~ll~ea~~~~~~~~~~~~~~~~~~~~~~~~v~~lL~~l~s~~~r~~~~i~~~l~RiLP~Lt~G~~e~m~------- 265 (802)
T PF13764_consen 193 EIIESLLSEANSSSSSESKSSSSLSGSEEQDKEQVEMLLERLNSPFVRSNPQILQALARILPFLTYGNEEKMD------- 265 (802)
T ss_pred HHHHHHHHHHhhhhhhhccccccccccccccHHHHHHHHHHhcCccccCCHHHHHHHHHHhhHHhcCCHHHHH-------
Confidence 3333332 11111110 01112 36667777664 4688999999999999988654322
Q ss_pred HHHhhcChHHHHHHhhcC--------CCHHHHHHHHHHHHHhhc----CC---ccHHHHHhcCcHHHHHHHHhcCC
Q 006114 576 SHLMEDSALEWLIANSKT--------NSASTRRHVELALCHLAQ----NE---DNARDFISRGGAKELVQISIESS 636 (660)
Q Consensus 576 ~~Li~~G~v~~Lv~lL~s--------~d~~vr~~Aa~AL~nLa~----~~---e~~~~Ive~G~l~~Lv~lL~s~s 636 (660)
.+ +..+-+.++- .+..+ ....++.++. +. ..+..|++.|++...+.++...-
T Consensus 266 -~L-----v~~F~p~l~f~~~D~~~~~~~~~---~Le~F~~i~~~I~~~~~G~~LK~~Il~~GIv~~a~~YL~~~~ 332 (802)
T PF13764_consen 266 -AL-----VEHFKPYLDFDKFDEEHSPDEQF---KLECFCEIAEGIPNNSNGNRLKDKILESGIVQDAIDYLLKHF 332 (802)
T ss_pred -HH-----HHHHHHhcChhhcccccCchHHH---HHHHHHHHHhcCCCCCchHHHHHHHHHhhHHHHHHHHHHHhC
Confidence 12 2222222211 11212 2344444432 22 44677888999998888887543
No 269
>PF12460 MMS19_C: RNAPII transcription regulator C-terminal; InterPro: IPR024687 This domain, approximately 60 amino acids in length, is found in the N-terminal region of MMS19 proteins. MMS19 is required for both nucleotide excision repair (NER) and RNA polymerase II (RNAP II) transcription [].
Probab=91.28 E-value=11 Score=42.09 Aligned_cols=184 Identities=17% Similarity=0.159 Sum_probs=110.5
Q ss_pred CHHHHHHhhC-CCCHHHHHHHHHHHHHhhCC-chhHHHHHHcCCHHHHHHHHccCCCHHHHHHHH----HHHHHhhc-Cc
Q 006114 408 GLPKILQLLT-SEDPDVQIHAVKVVANLAAE-DINQEKIVEEGGLDALLLLLRTSQNTTILRVAS----GAIANLAM-NE 480 (660)
Q Consensus 408 gI~~LV~LL~-s~d~~vr~~Aa~aL~nLa~~-~en~~~Ive~GgI~~Lv~LL~~s~d~~v~~~Aa----~AL~nLA~-~~ 480 (660)
.+..++.+.. +.++..+..++.+++.|+-- +... ..+ +.+..+...+....++..+..+. |+...|.. +.
T Consensus 190 ll~~l~~~~~~~~~~~~~~~~~~~la~LvNK~~~~~--~l~-~~l~~~~~~~~~~~~~~~~~~~~~~~~Wi~KaLv~R~~ 266 (415)
T PF12460_consen 190 LLQSLLNLALSSEDEFSRLAALQLLASLVNKWPDDD--DLD-EFLDSLLQSISSSEDSELRPQALEILIWITKALVMRGH 266 (415)
T ss_pred HHHHHHHHHHcCCChHHHHHHHHHHHHHHcCCCChh--hHH-HHHHHHHhhhcccCCcchhHHHHHHHHHHHHHHHHcCC
Confidence 4555665543 55688888889988877652 1111 110 12333333331122333333333 33333322 11
Q ss_pred hhHHHHHhcCccHHHHHhhcCCCCHHHHHHHHHHHHHHhcC-hhH-------------HHHHHhccHHHHHHHHhcCCCH
Q 006114 481 MNQGLIMSRGGGQLLAKTASKTDDPQTLRMVAGALANLCGN-EKL-------------HTMLEEDGAIKALLAMVRSGNI 546 (660)
Q Consensus 481 ~n~~~Ive~g~I~~Ll~LL~~s~d~~v~~~Aa~aLanLa~~-~~~-------------r~~iv~~G~V~~Lv~lL~s~~~ 546 (660)
+. ....+..|+.++. ++.+-..|+.++.-|..+ +.. ++.+- .-.+|.|+...+..+.
T Consensus 267 ~~-----~~~~~~~L~~lL~---~~~~g~~aA~~f~il~~d~~~~l~~~~~a~vklLykQR~F-~~~~p~L~~~~~~~~~ 337 (415)
T PF12460_consen 267 PL-----ATELLDKLLELLS---SPELGQQAAKAFGILLSDSDDVLNKENHANVKLLYKQRFF-TQVLPKLLEGFKEADD 337 (415)
T ss_pred ch-----HHHHHHHHHHHhC---ChhhHHHHHHHHhhHhcCcHHhcCccccchhhhHHhHHHH-HHHHHHHHHHHhhcCh
Confidence 11 1123556777774 367788888888888755 332 11111 1367778888887777
Q ss_pred HHHHHHHHHHHHhhccchhhhhhcchhhhHHHhh--cChHHHHHHhhcCCCHHHHHHHHHHHHHhhcCC
Q 006114 547 DVIAQVARGLANFAKCESRAIVQGQRKGRSHLME--DSALEWLIANSKTNSASTRRHVELALCHLAQNE 613 (660)
Q Consensus 547 ~v~~~Al~aLanLA~~~~~~~aq~~~e~r~~Li~--~G~v~~Lv~lL~s~d~~vr~~Aa~AL~nLa~~~ 613 (660)
..+.+.+.+|+++..+-|.. .+.. ...+|.|+..|..+++.++..+..+|..+..+.
T Consensus 338 ~~k~~yL~ALs~ll~~vP~~----------vl~~~l~~LlPLLlqsL~~~~~~v~~s~L~tL~~~l~~~ 396 (415)
T PF12460_consen 338 EIKSNYLTALSHLLKNVPKS----------VLLPELPTLLPLLLQSLSLPDADVLLSSLETLKMILEEA 396 (415)
T ss_pred hhHHHHHHHHHHHHhhCCHH----------HHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHcC
Confidence 78888899999988654421 1222 458899999999899999999999999988766
No 270
>KOG0982 consensus Centrosomal protein Nuf [Cell cycle control, cell division, chromosome partitioning; Cytoskeleton]
Probab=91.25 E-value=28 Score=38.71 Aligned_cols=90 Identities=19% Similarity=0.270 Sum_probs=61.4
Q ss_pred HhhhhhhhHHHHhhhhHHHHHHHHHhhhhhhhhhhhhHHHHHHHHHHHhhhhhhhhhhhhhhHHHHHHhhHHHHHHHHHH
Q 006114 106 RNLVTRSEFLEKENAHLELEVEKILGELNHQKDQNNLKREKIVQLEISLKNSKQQQLDNSSYQKVLADTTQMYEKKITEL 185 (660)
Q Consensus 106 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l 185 (660)
-|+.+|.--|+-||+.|-..+-+|+.....+.+...-+++.+.-+-..+.-.++.+-...-..--.......-..=|.+|
T Consensus 300 Enlqmr~qqleeentelRs~~arlksl~dklaee~qr~sd~LE~lrlql~~eq~l~~rm~d~Lrrfq~ekeatqELieel 379 (502)
T KOG0982|consen 300 ENLQMRDQQLEEENTELRSLIARLKSLADKLAEEDQRSSDLLEALRLQLICEQKLRVRMNDILRRFQEEKEATQELIEEL 379 (502)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHH
Confidence 48888999999999999999999999998888887777777777655555554444333322222333333333447788
Q ss_pred HHHHHHHHhh
Q 006114 186 IKQLEIEHAR 195 (660)
Q Consensus 186 ~~~l~~e~~~ 195 (660)
+|+|++-+-+
T Consensus 380 rkelehlr~~ 389 (502)
T KOG0982|consen 380 RKELEHLRRR 389 (502)
T ss_pred HHHHHHHHHH
Confidence 8888776543
No 271
>PF05667 DUF812: Protein of unknown function (DUF812); InterPro: IPR008530 This family consists of several eukaryotic proteins of unknown function.
Probab=91.16 E-value=37 Score=39.93 Aligned_cols=129 Identities=19% Similarity=0.287 Sum_probs=72.5
Q ss_pred HHHHHHHHHHHhhHHHHHHhhhhhhhHHHHhhhhHHHHHHHHHhhhhhhhhhhhhHHHHHHHHHHHhhhhhhhhhhhhhh
Q 006114 88 YEFEKQLRESQISYDESMRNLVTRSEFLEKENAHLELEVEKILGELNHQKDQNNLKREKIVQLEISLKNSKQQQLDNSSY 167 (660)
Q Consensus 88 ~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 167 (660)
-+|..+.-+.|.-..+.++.|+.....-+.+-.+.-.+|+.++...+.-........+...+|..+++...+.
T Consensus 411 ~~L~~qWe~~R~pL~~e~r~lk~~~~~~~~e~~~~~~~ik~~r~~~k~~~~e~~~Kee~~~qL~~e~e~~~k~------- 483 (594)
T PF05667_consen 411 VELAQQWEKHRAPLIEEYRRLKEKASNRESESKQKLQEIKELREEIKEIEEEIRQKEELYKQLVKELEKLPKD------- 483 (594)
T ss_pred HHHHHHHHHHHhHHHHHHHHHHHHHhhcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCC-------
Confidence 4555556666666666666666655555555555555666555555554444444444555554444443333
Q ss_pred HHHHHHhhHHHHHHHHHHHHHHHHHHhhhhchHHHHHHHHHHHhhhhhhHHHHhhhhhHHHHHHhhHHHHHHHHH
Q 006114 168 QKVLADTTQMYEKKITELIKQLEIEHARSEGAEEQVDTMKKLISDNQKSIEQYEMENSTYQKALADTTQLYEKKI 242 (660)
Q Consensus 168 ~~~~~~~~~~~~~~~~~l~~~l~~e~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 242 (660)
-.-+.|-.-|-|+.+.+.++... +.+.|.|.. +.|++-.+.+-.|-+|--.-+..|
T Consensus 484 -----~~Rs~Yt~RIlEIv~NI~KQk~e----------I~KIl~DTr----~lQkeiN~l~gkL~RtF~v~dEli 539 (594)
T PF05667_consen 484 -----VNRSAYTRRILEIVKNIRKQKEE----------IEKILSDTR----ELQKEINSLTGKLDRTFTVTDELI 539 (594)
T ss_pred -----CCHHHHHHHHHHHHHhHHHHHHH----------HHHHHHHHH----HHHHHHHHHHHHHHhHHHHHHHHH
Confidence 12346677788888877666633 566666666 455555555555555544444433
No 272
>KOG2999 consensus Regulator of Rac1, required for phagocytosis and cell migration [Signal transduction mechanisms]
Probab=91.10 E-value=9.6 Score=43.65 Aligned_cols=152 Identities=19% Similarity=0.253 Sum_probs=105.1
Q ss_pred HHHHHHhhCCCCHHHHHHHHHHHHHhhCCchhHHHHHHcCCHHHHHHHHccCCC---HHHHHHHHHHHHHhhcCchhHHH
Q 006114 409 LPKILQLLTSEDPDVQIHAVKVVANLAAEDINQEKIVEEGGLDALLLLLRTSQN---TTILRVASGAIANLAMNEMNQGL 485 (660)
Q Consensus 409 I~~LV~LL~s~d~~vr~~Aa~aL~nLa~~~en~~~Ive~GgI~~Lv~LL~~s~d---~~v~~~Aa~AL~nLA~~~~n~~~ 485 (660)
...++..+.+++...+..|...|..++.++.....++...|+..|..++.++.. .++...+..++..+-.+....=.
T Consensus 85 a~~i~e~l~~~~~~~~~~a~k~l~sls~d~~fa~efi~~~gl~~L~~liedg~~~~~~~~L~~~L~af~elmehgvvsW~ 164 (713)
T KOG2999|consen 85 AKRIMEILTEGNNISKMEALKELDSLSLDPTFAEEFIRCSGLELLFSLIEDGRVCMSSELLSTSLRAFSELMEHGVVSWE 164 (713)
T ss_pred HHHHHHHHhCCCcHHHHHHHHHHhhccccHHHHHHHHhcchHHHHHHHHHcCccchHHHHHHHHHHHHHHHHhhceeeee
Confidence 456788889999888888999999999999999999999999999999986544 34555555565555333110000
Q ss_pred HHhcCccHHHHHhhc-CCCCHHHHHHHHHHHHHHh-cChhHHHHHHhccHHHHHHHHhcCCCHHHHHHHHHHHHHhh
Q 006114 486 IMSRGGGQLLAKTAS-KTDDPQTLRMVAGALANLC-GNEKLHTMLEEDGAIKALLAMVRSGNIDVIAQVARGLANFA 560 (660)
Q Consensus 486 Ive~g~I~~Ll~LL~-~s~d~~v~~~Aa~aLanLa-~~~~~r~~iv~~G~V~~Lv~lL~s~~~~v~~~Al~aLanLA 560 (660)
.+...+|.....+.. ...+..+...|...|-++. .++..+..+.+.--+..|+..+...+..+...|+..|-.+-
T Consensus 165 ~~~~~fV~~~a~~V~~~~~~a~~~~~AL~~LE~~vl~s~~~~~~v~eev~i~~li~hlq~~n~~i~~~aial~nal~ 241 (713)
T KOG2999|consen 165 SVSNDFVVSMASYVNAKREDANTLLAALQMLESLVLGSDTLRQLVAEEVPIETLIRHLQVSNQRIQTCAIALLNALF 241 (713)
T ss_pred ecccHHHHHHHHHHhhhhhcccchHHHHHHHHHHHhCChHHHHHHHhcCcHHHHHHHHHhcchHHHHHHHHHHHHHH
Confidence 111112222222221 1235567777778888887 55667777888888889999999888888888777776554
No 273
>KOG0995 consensus Centromere-associated protein HEC1 [Cell cycle control, cell division, chromosome partitioning]
Probab=91.04 E-value=35 Score=39.40 Aligned_cols=138 Identities=21% Similarity=0.203 Sum_probs=71.6
Q ss_pred HHHHHHHHhhHHHHHHhhhhhhhHHHHhhhhHHHHHHHHHhhhhhhhhhhhhHHHHHHHHHHHhhhhhhhhhhhhhhHHH
Q 006114 91 EKQLRESQISYDESMRNLVTRSEFLEKENAHLELEVEKILGELNHQKDQNNLKREKIVQLEISLKNSKQQQLDNSSYQKV 170 (660)
Q Consensus 91 e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 170 (660)
++..++.-..|. ++.....+.+-|.+..++|.--+..+..-..+-++.+-.|.+++.+| ..-.+-
T Consensus 241 ~~~n~~l~e~i~-e~ek~~~~~eslre~~~~L~~D~nK~~~y~~~~~~k~~~~~~~l~~l--------------~~Eie~ 305 (581)
T KOG0995|consen 241 KKTNRELEEMIN-EREKDPGKEESLREKKARLQDDVNKFQAYVSQMKSKKQHMEKKLEML--------------KSEIEE 305 (581)
T ss_pred HHHHHHHHHHHH-HHhcCcchHHHHHHHHHHHHhHHHHHHHHHHHHHhhhHHHHHHHHHH--------------HHHHHH
Confidence 333333333343 33445555555555555555555555555555555554554444444 222233
Q ss_pred HHHhhHHHHHHHHHHHHHHHHHH---hhhhchHHHHHHHHHHHhhhhhhHHHHhhhhhHHHHHHhhHHHHHHHHHHHHhh
Q 006114 171 LADTTQMYEKKITELIKQLEIEH---ARSEGAEEQVDTMKKLISDNQKSIEQYEMENSTYQKALADTTQLYEKKIAELNK 247 (660)
Q Consensus 171 ~~~~~~~~~~~~~~l~~~l~~e~---~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~ 247 (660)
-.-++..+-+++.+|+++++.+. ..-..|.-+.+.|++-|.+.+ .+-+..++.+-++--.|+--+.++.+
T Consensus 306 kEeE~e~lq~~~d~Lk~~Ie~Q~iS~~dve~mn~Er~~l~r~l~~i~-------~~~d~l~k~vw~~~l~~~~~f~~le~ 378 (581)
T KOG0995|consen 306 KEEEIEKLQKENDELKKQIELQGISGEDVERMNLERNKLKRELNKIQ-------SELDRLSKEVWELKLEIEDFFKELEK 378 (581)
T ss_pred HHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHhHHHHHHHHHHHHHH
Confidence 34455666667777777777662 222455666666666666665 44455555555554445544445444
Q ss_pred hhh
Q 006114 248 KLE 250 (660)
Q Consensus 248 ~~~ 250 (660)
++-
T Consensus 379 ~~~ 381 (581)
T KOG0995|consen 379 KFI 381 (581)
T ss_pred HHH
Confidence 444
No 274
>PF10481 CENP-F_N: Cenp-F N-terminal domain; InterPro: IPR018463 Mitosin or centromere-associated protein-F (Cenp-F) is found bound across the centromere as one of the proteins of the outer layer of the kinetochore []. Most of the kinetochore/centromere functions appear to depend upon binding of the C-terminal part of the molecule, whereas the N-terminal part, here, may be a cytoplasmic player in controlling the function of microtubules and dynein [].
Probab=91.02 E-value=7.8 Score=40.52 Aligned_cols=32 Identities=19% Similarity=0.175 Sum_probs=28.2
Q ss_pred hHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHH
Q 006114 281 KEVHELCVKLKETRQLHESAVYEVQTLKSEYK 312 (660)
Q Consensus 281 ~e~~~Lk~~Le~e~~~~e~~e~E~~~lks~l~ 312 (660)
....+|+..|.+++.+++.+|.|+..|+....
T Consensus 162 sk~e~L~ekynkeveerkrle~e~k~lq~k~~ 193 (307)
T PF10481_consen 162 SKYEELQEKYNKEVEERKRLEAEVKALQAKKA 193 (307)
T ss_pred hhHHHHHHHHHHHHHHHhhHHHHHHHHhcccC
Confidence 66789999999999999999999999996544
No 275
>smart00638 LPD_N Lipoprotein N-terminal Domain.
Probab=90.62 E-value=12 Score=43.60 Aligned_cols=137 Identities=19% Similarity=0.160 Sum_probs=79.6
Q ss_pred ccHHHHHhhcCC---CCHHHHHHHHHHHHHHh----cChhHHHHHHhccHHHHHHHHhc----CCCHHHHHHHHHHHHHh
Q 006114 491 GGQLLAKTASKT---DDPQTLRMVAGALANLC----GNEKLHTMLEEDGAIKALLAMVR----SGNIDVIAQVARGLANF 559 (660)
Q Consensus 491 ~I~~Ll~LL~~s---~d~~v~~~Aa~aLanLa----~~~~~r~~iv~~G~V~~Lv~lL~----s~~~~v~~~Al~aLanL 559 (660)
.+..+..++..+ ..+.+...|.-+++++. .+...+...+-...++.+...+. ..+.+-+..++.+|||+
T Consensus 394 ~l~~l~~l~~~~~~~~~~~l~~sa~l~~~~lv~~~c~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~LkaLGN~ 473 (574)
T smart00638 394 ILKALFELAESPEVQKQPYLRESALLAYGSLVRRYCVNTPSCPDFVLEELLKYLHELLQQAVSKGDEEEIQLYLKALGNA 473 (574)
T ss_pred HHHHHHHHhcCccccccHHHHHHHHHHHHHHHHHHhcCCCCCChhhHHHHHHHHHHHHHHHHhcCCchheeeHHHhhhcc
Confidence 455566666532 34555555555555554 33322212222345666666554 34666677889999998
Q ss_pred hccchhhhhhcchhhhHHHhhcChHHHHHHhhc-C--CCHHHHHHHHHHHHHhhc-CCccHHHHHhcCcHHHHHHHHhcC
Q 006114 560 AKCESRAIVQGQRKGRSHLMEDSALEWLIANSK-T--NSASTRRHVELALCHLAQ-NEDNARDFISRGGAKELVQISIES 635 (660)
Q Consensus 560 A~~~~~~~aq~~~e~r~~Li~~G~v~~Lv~lL~-s--~d~~vr~~Aa~AL~nLa~-~~e~~~~Ive~G~l~~Lv~lL~s~ 635 (660)
... ..++.+..++. + .+..+|..|++||..++. ++.. +-+.|..+....
T Consensus 474 g~~-------------------~~i~~l~~~l~~~~~~~~~iR~~Av~Alr~~a~~~p~~--------v~~~l~~i~~n~ 526 (574)
T smart00638 474 GHP-------------------SSIKVLEPYLEGAEPLSTFIRLAAILALRNLAKRDPRK--------VQEVLLPIYLNR 526 (574)
T ss_pred CCh-------------------hHHHHHHHhcCCCCCCCHHHHHHHHHHHHHHHHhCchH--------HHHHHHHHHcCC
Confidence 743 24555666555 2 357899999999998874 3332 334555566554
Q ss_pred -ChHHHHHHHHHHH-hcCcch
Q 006114 636 -SREDIRNLAKKTM-KSNPRL 654 (660)
Q Consensus 636 -s~~~ir~~A~~~L-~~~p~~ 654 (660)
.+..+|-+|.-+| .++|+.
T Consensus 527 ~e~~EvRiaA~~~lm~t~P~~ 547 (574)
T smart00638 527 AEPPEVRMAAVLVLMETKPSV 547 (574)
T ss_pred CCChHHHHHHHHHHHhcCCCH
Confidence 3445777777444 555764
No 276
>PF02985 HEAT: HEAT repeat; InterPro: IPR000357 The HEAT repeat is a tandemly repeated, 37-47 amino acid long module occurring in a number of cytoplasmic proteins, including the four name-giving proteins huntingtin, elongation factor 3 (EF3), the 65 Kd alpha regulatory subunit of protein phosphatase 2A (PP2A) and the yeast PI3-kinase TOR1 []. Arrays of HEAT repeats consists of 3 to 36 units forming a rod-like helical structure and appear to function as protein-protein interaction surfaces. It has been noted that many HEAT repeat-containing proteins are involved in intracellular transport processes. In the crystal structure of PP2A PR65/A [], the HEAT repeats consist of pairs of antiparallel alpha helices [].; GO: 0005515 protein binding; PDB: 3FGA_A 2PF4_C 2IAE_A 2BKU_D 3EA5_B 3ND2_A 2BPT_A 2NYL_A 2NPP_D 2PKG_B ....
Probab=90.61 E-value=0.43 Score=33.07 Aligned_cols=28 Identities=25% Similarity=0.362 Sum_probs=24.7
Q ss_pred HHHHHHHHccCCCHHHHHHHHHHHHHhhc
Q 006114 450 LDALLLLLRTSQNTTILRVASGAIANLAM 478 (660)
Q Consensus 450 I~~Lv~LL~~s~d~~v~~~Aa~AL~nLA~ 478 (660)
+|.++.++. ++++.||..|+.+|+.|+.
T Consensus 2 lp~l~~~l~-D~~~~VR~~a~~~l~~i~~ 29 (31)
T PF02985_consen 2 LPILLQLLN-DPSPEVRQAAAECLGAIAE 29 (31)
T ss_dssp HHHHHHHHT--SSHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHcC-CCCHHHHHHHHHHHHHHHh
Confidence 688999997 8999999999999999875
No 277
>KOG2025 consensus Chromosome condensation complex Condensin, subunit G [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning]
Probab=90.59 E-value=6.7 Score=46.10 Aligned_cols=129 Identities=16% Similarity=0.118 Sum_probs=80.0
Q ss_pred HHHHHHHHHHHHhhCCchhHHHHHHcCCHHHHHHHHccCCCHHHHHHHHHHHHHhhcCchhHHHHHhcCccHHHHHhhcC
Q 006114 422 DVQIHAVKVVANLAAEDINQEKIVEEGGLDALLLLLRTSQNTTILRVASGAIANLAMNEMNQGLIMSRGGGQLLAKTASK 501 (660)
Q Consensus 422 ~vr~~Aa~aL~nLa~~~en~~~Ive~GgI~~Lv~LL~~s~d~~v~~~Aa~AL~nLA~~~~n~~~Ive~g~I~~Ll~LL~~ 501 (660)
.+...++..+..+-..+..-. ++ .|.+..|+.-.. +++..|+..+|..|+-+..+..-.+..+-.+....+..-+.+
T Consensus 61 RIl~fla~fv~sl~q~d~e~D-lV-~~~f~hlLRg~E-skdk~VRfrvlqila~l~d~~~eidd~vfn~l~e~l~~Rl~D 137 (892)
T KOG2025|consen 61 RILSFLARFVESLPQLDKEED-LV-AGTFYHLLRGTE-SKDKKVRFRVLQILALLSDENAEIDDDVFNKLNEKLLIRLKD 137 (892)
T ss_pred HHHHHHHHHHHhhhccCchhh-HH-HHHHHHHHhccc-CcchhHHHHHHHHHHHHhccccccCHHHHHHHHHHHHHHHhc
Confidence 444445555555544221111 22 123444555444 678899999999999987753323333334455555555554
Q ss_pred CCCHHHHHHHHHHHHHHhcChhHHHHHHhccHHHHHHHHhc-CCCHHHHHHHHHHHHH
Q 006114 502 TDDPQTLRMVAGALANLCGNEKLHTMLEEDGAIKALLAMVR-SGNIDVIAQVARGLAN 558 (660)
Q Consensus 502 s~d~~v~~~Aa~aLanLa~~~~~r~~iv~~G~V~~Lv~lL~-s~~~~v~~~Al~aLan 558 (660)
..|.|+..|..||+.+-.+|.. -+..++..++.+++ .++++|+..|+..|.+
T Consensus 138 -rep~VRiqAv~aLsrlQ~d~~d----ee~~v~n~l~~liqnDpS~EVRRaaLsnI~v 190 (892)
T KOG2025|consen 138 -REPNVRIQAVLALSRLQGDPKD----EECPVVNLLKDLIQNDPSDEVRRAALSNISV 190 (892)
T ss_pred -cCchHHHHHHHHHHHHhcCCCC----CcccHHHHHHHHHhcCCcHHHHHHHHHhhcc
Confidence 5789999999999988743322 12346778888887 6789999988777653
No 278
>KOG0963 consensus Transcription factor/CCAAT displacement protein CDP1 [Transcription]
Probab=90.43 E-value=41 Score=39.20 Aligned_cols=18 Identities=33% Similarity=0.566 Sum_probs=12.1
Q ss_pred hhhhhhhcchHHHHHHHH
Q 006114 6 MVKLKEEFDYESLCRKLE 23 (660)
Q Consensus 6 ~~~~~~~~~~~~~~~~~~ 23 (660)
|...-..||++-|-|.|+
T Consensus 8 ~~~~Wk~~dle~LQreLd 25 (629)
T KOG0963|consen 8 VTQYWKRFDLERLQRELD 25 (629)
T ss_pred HHHHHHhccHHHHHHHHH
Confidence 344556788888877764
No 279
>PF13251 DUF4042: Domain of unknown function (DUF4042)
Probab=90.36 E-value=1.9 Score=42.78 Aligned_cols=138 Identities=16% Similarity=0.157 Sum_probs=85.8
Q ss_pred HHHHHHHHHHHhhCCchhHHH-------HH-----HcCCHHHHHHHHccCCCHHHHHHHHHHHHHhhcCchhHHHHHh--
Q 006114 423 VQIHAVKVVANLAAEDINQEK-------IV-----EEGGLDALLLLLRTSQNTTILRVASGAIANLAMNEMNQGLIMS-- 488 (660)
Q Consensus 423 vr~~Aa~aL~nLa~~~en~~~-------Iv-----e~GgI~~Lv~LL~~s~d~~v~~~Aa~AL~nLA~~~~n~~~Ive-- 488 (660)
+|..|+.+|..++..-+-+.. +- ..+.-+.|+.++-.++++.+|..|+.+|..|-.+...--...+
T Consensus 2 vR~~Al~~L~al~k~~~~r~l~~yW~~llP~~~~~~~~~~~sLlt~il~Dp~~kvR~aA~~~l~~lL~gsk~~L~~Ae~~ 81 (182)
T PF13251_consen 2 VRQAALQCLQALAKSTDKRSLFGYWPALLPDSVLQGRPATPSLLTCILKDPSPKVRAAAASALAALLEGSKPFLAQAEES 81 (182)
T ss_pred hhHHHHHHHHHHHHhcCCceeHhhHHHHCCCCCCcCCCCCcchhHHHHcCCchhHHHHHHHHHHHHHHccHHHHHHHHhc
Confidence 567777777777764111111 11 1224566666666689999999999999998766321111111
Q ss_pred ---cCc---------------cHHHHHhhcCCCCHHHHHHHHHHHHHHhcChhHHHHHHhccHHHHHH----HHhcCCCH
Q 006114 489 ---RGG---------------GQLLAKTASKTDDPQTLRMVAGALANLCGNEKLHTMLEEDGAIKALL----AMVRSGNI 546 (660)
Q Consensus 489 ---~g~---------------I~~Ll~LL~~s~d~~v~~~Aa~aLanLa~~~~~r~~iv~~G~V~~Lv----~lL~s~~~ 546 (660)
.+. -..|+..|....++.+....+.+|+.|..+..+.. ...|.++.++ .++.+.|+
T Consensus 82 ~~~~~sFtslS~tLa~~i~~lH~~Ll~~L~~E~~~~~l~q~lK~la~Lv~~tPY~r--L~~~ll~~~v~~v~~~l~~~d~ 159 (182)
T PF13251_consen 82 KGPSGSFTSLSSTLASMIMELHRGLLLALQAEKSPPVLTQLLKCLAVLVQATPYHR--LPPGLLTEVVTQVRPLLRHRDP 159 (182)
T ss_pred CCCCCCcccHHHHHHHHHHHHHHHHHHHHhcccccHHHHHHHHHHHHHHccCChhh--cCHhHHHHHHHHHHHHHhcCCC
Confidence 111 12344455555677888888899998884433322 1235555544 45568899
Q ss_pred HHHHHHHHHHHHhhcc
Q 006114 547 DVIAQVARGLANFAKC 562 (660)
Q Consensus 547 ~v~~~Al~aLanLA~~ 562 (660)
+++..++.+++.+.+.
T Consensus 160 ~v~v~~l~~~~~l~s~ 175 (182)
T PF13251_consen 160 NVRVAALSCLGALLSV 175 (182)
T ss_pred cHHHHHHHHHHHHHcC
Confidence 9999999999988754
No 280
>PRK09039 hypothetical protein; Validated
Probab=90.34 E-value=23 Score=38.78 Aligned_cols=98 Identities=18% Similarity=0.229 Sum_probs=55.6
Q ss_pred hhhHHHHHHHHHhhhhhhhhhhhhHHHHHHHHHHHhhhhhhhhhhhhhhHHHHHHhhHHHHHHHHHHHHHHHHHHhhhhc
Q 006114 119 NAHLELEVEKILGELNHQKDQNNLKREKIVQLEISLKNSKQQQLDNSSYQKVLADTTQMYEKKITELIKQLEIEHARSEG 198 (660)
Q Consensus 119 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~e~~~~~~ 198 (660)
...|+.+|.+|=..+.-.......+...+.+|...+.......-+....+..........+.....+...|..++..+..
T Consensus 55 L~~L~~qIa~L~e~L~le~~~~~~l~~~l~~l~~~l~~a~~~r~~Le~~~~~~~~~~~~~~~~~~~l~~~L~~~k~~~se 134 (343)
T PRK09039 55 LDRLNSQIAELADLLSLERQGNQDLQDSVANLRASLSAAEAERSRLQALLAELAGAGAAAEGRAGELAQELDSEKQVSAR 134 (343)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhcchHHHHHHHHHHHHHHHHHHHHH
Confidence 33333333333333344445555556666666555554444444333333333344456666677777777777777777
Q ss_pred hHHHHHHHHHHHhhhhhh
Q 006114 199 AEEQVDTMKKLISDNQKS 216 (660)
Q Consensus 199 ~~~~~~~l~~~l~~~~~~ 216 (660)
++-++..|++++..++..
T Consensus 135 ~~~~V~~L~~qI~aLr~Q 152 (343)
T PRK09039 135 ALAQVELLNQQIAALRRQ 152 (343)
T ss_pred hhHHHHHHHHHHHHHHHH
Confidence 777777777777777743
No 281
>PF12460 MMS19_C: RNAPII transcription regulator C-terminal; InterPro: IPR024687 This domain, approximately 60 amino acids in length, is found in the N-terminal region of MMS19 proteins. MMS19 is required for both nucleotide excision repair (NER) and RNA polymerase II (RNAP II) transcription [].
Probab=90.25 E-value=7.1 Score=43.60 Aligned_cols=189 Identities=17% Similarity=0.114 Sum_probs=110.2
Q ss_pred CHHHHHHHHccCCCHHHHHHHHHHHHHhhcC-chhHHHHHhcCccHHHHHhhcCCC----CHHHHHHHHHHHHHHh-cCh
Q 006114 449 GLDALLLLLRTSQNTTILRVASGAIANLAMN-EMNQGLIMSRGGGQLLAKTASKTD----DPQTLRMVAGALANLC-GNE 522 (660)
Q Consensus 449 gI~~Lv~LL~~s~d~~v~~~Aa~AL~nLA~~-~~n~~~Ive~g~I~~Ll~LL~~s~----d~~v~~~Aa~aLanLa-~~~ 522 (660)
.+..++.+..+..++..+..++.+++.|+.- +... . -.+.+..+...+.... .+......+|...-|. .+.
T Consensus 190 ll~~l~~~~~~~~~~~~~~~~~~~la~LvNK~~~~~--~-l~~~l~~~~~~~~~~~~~~~~~~~~~~~~Wi~KaLv~R~~ 266 (415)
T PF12460_consen 190 LLQSLLNLALSSEDEFSRLAALQLLASLVNKWPDDD--D-LDEFLDSLLQSISSSEDSELRPQALEILIWITKALVMRGH 266 (415)
T ss_pred HHHHHHHHHHcCCChHHHHHHHHHHHHHHcCCCChh--h-HHHHHHHHHhhhcccCCcchhHHHHHHHHHHHHHHHHcCC
Confidence 4667777776677788888899999988754 2211 0 0122333333221112 2233334444444443 222
Q ss_pred hHHHHHHhccHHHHHHHHhcCCCHHHHHHHHHHHHHhhccchhhhhhcchhhhHHHhh----cChHHHHHHhhcCCCHHH
Q 006114 523 KLHTMLEEDGAIKALLAMVRSGNIDVIAQVARGLANFAKCESRAIVQGQRKGRSHLME----DSALEWLIANSKTNSAST 598 (660)
Q Consensus 523 ~~r~~iv~~G~V~~Lv~lL~s~~~~v~~~Al~aLanLA~~~~~~~aq~~~e~r~~Li~----~G~v~~Lv~lL~s~d~~v 598 (660)
.. ....+..|+.++.+ +.+...|+.+++-|..+.+...+......-+.+.. .-.+|.|+......+...
T Consensus 267 ~~-----~~~~~~~L~~lL~~--~~~g~~aA~~f~il~~d~~~~l~~~~~a~vklLykQR~F~~~~p~L~~~~~~~~~~~ 339 (415)
T PF12460_consen 267 PL-----ATELLDKLLELLSS--PELGQQAAKAFGILLSDSDDVLNKENHANVKLLYKQRFFTQVLPKLLEGFKEADDEI 339 (415)
T ss_pred ch-----HHHHHHHHHHHhCC--hhhHHHHHHHHhhHhcCcHHhcCccccchhhhHHhHHHHHHHHHHHHHHHhhcChhh
Confidence 11 11345567777766 77788889999888877454433222222333333 346777777777777778
Q ss_pred HHHHHHHHHHhhcCCccHHHHHh-cCcHHHHHHHHhcCChHHHHHHHHHHH
Q 006114 599 RRHVELALCHLAQNEDNARDFIS-RGGAKELVQISIESSREDIRNLAKKTM 648 (660)
Q Consensus 599 r~~Aa~AL~nLa~~~e~~~~Ive-~G~l~~Lv~lL~s~s~~~ir~~A~~~L 648 (660)
+.+-..||.++..+-+....+-+ ...+|.|+..+..++ .+++..+..+|
T Consensus 340 k~~yL~ALs~ll~~vP~~vl~~~l~~LlPLLlqsL~~~~-~~v~~s~L~tL 389 (415)
T PF12460_consen 340 KSNYLTALSHLLKNVPKSVLLPELPTLLPLLLQSLSLPD-ADVLLSSLETL 389 (415)
T ss_pred HHHHHHHHHHHHhhCCHHHHHHHHHHHHHHHHHHhCCCC-HHHHHHHHHHH
Confidence 89999999999887654333333 346777788885444 45666666554
No 282
>TIGR01005 eps_transp_fam exopolysaccharide transport protein family. The model describes the exopolysaccharide transport protein family in bacteria. The transport protein is part of a large genetic locus which is associated with exopolysaccharide (EPS) biosynthesis. Detailed molecular characterization and gene fusion analysis revealed atleast seven gene products are involved in the overall regulation, which among other things, include exopolysaccharide biosynthesis, property of conferring virulence and exopolysaccharide export.
Probab=90.24 E-value=50 Score=39.87 Aligned_cols=43 Identities=14% Similarity=0.069 Sum_probs=23.1
Q ss_pred hhHHHHHHHHHHHHHHHHHHhhhhchHHHHHHHHHHHhhhhhh
Q 006114 174 TTQMYEKKITELIKQLEIEHARSEGAEEQVDTMKKLISDNQKS 216 (660)
Q Consensus 174 ~~~~~~~~~~~l~~~l~~e~~~~~~~~~~~~~l~~~l~~~~~~ 216 (660)
.++.+..++.++..++..-..++..-+-++..++.++.++++.
T Consensus 289 ~i~~L~~~l~~l~~~~~~l~~~y~~~hP~v~~l~~qi~~l~~~ 331 (754)
T TIGR01005 289 LIQRLRERQAELRATIADLSTTMLANHPRVVAAKSSLADLDAQ 331 (754)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHHHH
Confidence 3444455555555555555555555555555566655555543
No 283
>KOG2956 consensus CLIP-associating protein [General function prediction only]
Probab=90.14 E-value=14 Score=41.69 Aligned_cols=174 Identities=14% Similarity=0.136 Sum_probs=102.1
Q ss_pred CCHHHHHHHHHHHHHhhC-CchhHHHHHHcCCHHHHHHHHccCCCHHHHHHHHHHHHHhhcCchhHHHHHhcCccHHHHH
Q 006114 419 EDPDVQIHAVKVVANLAA-EDINQEKIVEEGGLDALLLLLRTSQNTTILRVASGAIANLAMNEMNQGLIMSRGGGQLLAK 497 (660)
Q Consensus 419 ~d~~vr~~Aa~aL~nLa~-~~en~~~Ive~GgI~~Lv~LL~~s~d~~v~~~Aa~AL~nLA~~~~n~~~Ive~g~I~~Ll~ 497 (660)
+...-+..|..-|..+.. +...-..=.-...+..++..|.++.+..++..|.+.|.-++.+...+-.=...=+|-.++.
T Consensus 299 e~a~~~k~alsel~~m~~e~sfsvWeq~f~~iL~~l~EvL~d~~~~~~k~laLrvL~~ml~~Q~~~l~DstE~ai~K~Le 378 (516)
T KOG2956|consen 299 ERASERKEALSELPKMLCEGSFSVWEQHFAEILLLLLEVLSDSEDEIIKKLALRVLREMLTNQPARLFDSTEIAICKVLE 378 (516)
T ss_pred cchhHHHHHHHHHHHHHHccchhHHHHHHHHHHHHHHHHHccchhhHHHHHHHHHHHHHHHhchHhhhchHHHHHHHHHH
Confidence 345566666665554433 3322211111113677889998768899999999999999887331111111224445555
Q ss_pred hhcCCCCHHHHHHHH-HHHHHHhcChhHHHHHHhccHHHHHHHHhcCCCHHHHHHHHHHHHHhhccchhhhhhcchhhhH
Q 006114 498 TASKTDDPQTLRMVA-GALANLCGNEKLHTMLEEDGAIKALLAMVRSGNIDVIAQVARGLANFAKCESRAIVQGQRKGRS 576 (660)
Q Consensus 498 LL~~s~d~~v~~~Aa-~aLanLa~~~~~r~~iv~~G~V~~Lv~lL~s~~~~v~~~Al~aLanLA~~~~~~~aq~~~e~r~ 576 (660)
...+ .++.|...|. .|+.-++.....+ .|..+..++-..+...-..++..+..++..=+ ..
T Consensus 379 aa~d-s~~~v~~~Aeed~~~~las~~P~~-------~I~~i~~~Ilt~D~~~~~~~iKm~Tkl~e~l~----------~E 440 (516)
T KOG2956|consen 379 AAKD-SQDEVMRVAEEDCLTTLASHLPLQ-------CIVNISPLILTADEPRAVAVIKMLTKLFERLS----------AE 440 (516)
T ss_pred HHhC-CchhHHHHHHHHHHHHHHhhCchh-------HHHHHhhHHhcCcchHHHHHHHHHHHHHhhcC----------HH
Confidence 5555 4455666565 4555665333332 23344444444555555566667766664311 11
Q ss_pred HH--hhcChHHHHHHhhcCCCHHHHHHHHHHHHHhh
Q 006114 577 HL--MEDSALEWLIANSKTNSASTRRHVELALCHLA 610 (660)
Q Consensus 577 ~L--i~~G~v~~Lv~lL~s~d~~vr~~Aa~AL~nLa 610 (660)
.+ +-....|.++....+.+..||+.|+++|..+.
T Consensus 441 eL~~ll~diaP~~iqay~S~SS~VRKtaVfCLVamv 476 (516)
T KOG2956|consen 441 ELLNLLPDIAPCVIQAYDSTSSTVRKTAVFCLVAMV 476 (516)
T ss_pred HHHHhhhhhhhHHHHHhcCchHHhhhhHHHhHHHHH
Confidence 12 23567888888899999999999999997653
No 284
>PF10481 CENP-F_N: Cenp-F N-terminal domain; InterPro: IPR018463 Mitosin or centromere-associated protein-F (Cenp-F) is found bound across the centromere as one of the proteins of the outer layer of the kinetochore []. Most of the kinetochore/centromere functions appear to depend upon binding of the C-terminal part of the molecule, whereas the N-terminal part, here, may be a cytoplasmic player in controlling the function of microtubules and dynein [].
Probab=90.03 E-value=22 Score=37.32 Aligned_cols=151 Identities=19% Similarity=0.228 Sum_probs=92.0
Q ss_pred HHHHHHHHHhhhhhhHHHHhhhhhHHHHHHhhHHHHHHHHHHHHhhhhhhhhhhhhhhHHhHHHHHHHhhhhhccccchh
Q 006114 202 QVDTMKKLISDNQKSIEQYEMENSTYQKALADTTQLYEKKIAELNKKLEDEHACFEGAVEQLDMVKKLLSDYQNSNQGQK 281 (660)
Q Consensus 202 ~~~~l~~~l~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 281 (660)
++..|+.+|..++|..+|.+.--.++..+|--..+-.|..-.+.. -|..|+.++-..=+.|...+.-|+-- +.....
T Consensus 19 KIqelE~QldkLkKE~qQrQfQleSlEAaLqKQKqK~e~ek~e~s-~LkREnq~l~e~c~~lek~rqKlshd--lq~Ke~ 95 (307)
T PF10481_consen 19 KIQELEQQLDKLKKERQQRQFQLESLEAALQKQKQKVEEEKNEYS-ALKRENQSLMESCENLEKTRQKLSHD--LQVKES 95 (307)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHhhhhh-hhhhhhhhHHHHHHHHHHHHHHhhHH--HhhhHH
Confidence 344444444444444444444444444444444333333322221 24445555555555555554444321 222344
Q ss_pred HHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHhhhhccHHH-------------------------HHHHHHHHHHH
Q 006114 282 EVHELCVKLKETRQLHESAVYEVQTLKSEYKNLLEEKETMSDEL-------------------------QAARQRLLVEE 336 (660)
Q Consensus 282 e~~~Lk~~Le~e~~~~e~~e~E~~~lks~l~~l~~~~~~~~eel-------------------------~~~~k~l~~e~ 336 (660)
-+.-|...|..-..+.+.+++|+.++|++|...+.....++..+ ..++...-.++
T Consensus 96 qv~~lEgQl~s~Kkqie~Leqelkr~KsELErsQ~~~~~~~~sl~~~stpqk~f~~p~tp~q~~~~sk~e~L~ekynkev 175 (307)
T PF10481_consen 96 QVNFLEGQLNSCKKQIEKLEQELKRCKSELERSQQAASSGDVSLNPCSTPQKSFATPLTPSQYYSDSKYEELQEKYNKEV 175 (307)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCccccccCCchhhccCCCChhhhhhhhhHHHHHHHHHHHH
Confidence 56778888888888999999999999999987776666555443 45566677788
Q ss_pred HHhhhhHHHHHHHHhhCCC
Q 006114 337 KQRKAIEYELVKLKKTAPE 355 (660)
Q Consensus 337 ~~rkkLe~E~~~l~~~l~~ 355 (660)
-.|++|+.|+..++.....
T Consensus 176 eerkrle~e~k~lq~k~~~ 194 (307)
T PF10481_consen 176 EERKRLEAEVKALQAKKAS 194 (307)
T ss_pred HHHhhHHHHHHHHhcccCC
Confidence 8999999999999865544
No 285
>PF05667 DUF812: Protein of unknown function (DUF812); InterPro: IPR008530 This family consists of several eukaryotic proteins of unknown function.
Probab=89.92 E-value=23 Score=41.56 Aligned_cols=92 Identities=22% Similarity=0.302 Sum_probs=56.1
Q ss_pred HhhHHHHHHHHHHHHHHHHHHhhhhchHHHHHHHHHHHhhhhhhHHHHhhhhhHHHHHHhhHHHHH------HHHHHHHh
Q 006114 173 DTTQMYEKKITELIKQLEIEHARSEGAEEQVDTMKKLISDNQKSIEQYEMENSTYQKALADTTQLY------EKKIAELN 246 (660)
Q Consensus 173 ~~~~~~~~~~~~l~~~l~~e~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~l~~~~~~~------~~~~~~~~ 246 (660)
++....++++.+|.++|++-......+++++..++..+...-....+.+.++....+.+.--..++ +.-|+.|.
T Consensus 321 ~~~~~~~~el~~l~~~l~~l~~~i~~~~~~~~~l~~~~~q~~~e~~~~~~~~~~le~~~~l~~k~~~lL~d~e~ni~kL~ 400 (594)
T PF05667_consen 321 DEQEEQEQELEELQEQLDELESQIEELEAEIKMLKSSLKQLEEELEEKEAENEELEEELKLKKKTVELLPDAEENIAKLQ 400 (594)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcHHHHHHHH
Confidence 344566777778888887777777777777777777777776666666666666665555222222 34455555
Q ss_pred hhhhhhhhhhhhhHHhHH
Q 006114 247 KKLEDEHACFEGAVEQLD 264 (660)
Q Consensus 247 ~~~~~~~~~~~~~~~~~~ 264 (660)
..++.-..|...+..|..
T Consensus 401 ~~v~~s~~rl~~L~~qWe 418 (594)
T PF05667_consen 401 ALVEASEQRLVELAQQWE 418 (594)
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 555554444444444443
No 286
>PF05622 HOOK: HOOK protein; InterPro: IPR008636 This family consists of several HOOK1, 2 and 3 proteins from different eukaryotic organisms. The different members of the Homo sapiens gene family are HOOK1, HOOK2 and HOOK3. Different domains have been identified in the three Homo sapiens HOOK proteins, and it was demonstrated that the highly conserved NH2-domain mediates attachment to microtubules, whereas the central coiled-coil motif mediates homodimerisation and the more divergent C-terminal domains are involved in binding to specific organelles (organelle-binding domains). It has been demonstrated that endogenous HOOK3 binds to Golgi membranes [], whereas both HOOK1 and HOOK2 are localised to discrete but unidentified cellular structures. In mice the Hook1 gene is predominantly expressed in the testis. Hook1 function is necessary for the correct positioning of microtubular structures within the haploid germ cell. Disruption of Hook1 function in mice causes abnormal sperm head shape and fragile attachment of the flagellum to the sperm head [].; GO: 0008017 microtubule binding, 0000226 microtubule cytoskeleton organization, 0005737 cytoplasm; PDB: 1WIX_A.
Probab=89.88 E-value=0.094 Score=62.59 Aligned_cols=53 Identities=23% Similarity=0.245 Sum_probs=0.0
Q ss_pred hhhHHHHhhhhhHHHHHHhhHHHHHHHHHHHHhhhhhhhhhhhhhhHHhHHHHHHH
Q 006114 214 QKSIEQYEMENSTYQKALADTTQLYEKKIAELNKKLEDEHACFEGAVEQLDMVKKL 269 (660)
Q Consensus 214 ~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 269 (660)
.-.+...+.||..++.... .....++.+|..+|+|-..+....+.+....++-
T Consensus 458 ~erl~rLe~ENk~Lk~~~e---~~~~e~~~~L~~~Leda~~~~~~Le~~~~~~~~~ 510 (713)
T PF05622_consen 458 RERLLRLEHENKRLKEKQE---ESEEEKLEELQSQLEDANRRKEKLEEENREANEK 510 (713)
T ss_dssp --------------------------------------------------------
T ss_pred HHHHHHHHHHHHHHHHHhc---cchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344456688877765543 2336678888888888887777777666554443
No 287
>KOG0999 consensus Microtubule-associated protein Bicaudal-D [Intracellular trafficking, secretion, and vesicular transport]
Probab=89.80 E-value=43 Score=38.48 Aligned_cols=115 Identities=23% Similarity=0.242 Sum_probs=58.0
Q ss_pred hHHHHHHHHHHHHhhHHHHHhhHHHHHHHHHHHHHHHHHhhhhchHHHHHH---HHH---HHhhHHHHHHhhhhhhhHHH
Q 006114 43 DKCELEKLLRECQISYDEAKDNLVTQVELLTAKIEMQQKLRENDKYEFEKQ---LRE---SQISYDESMRNLVTRSEFLE 116 (660)
Q Consensus 43 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~---~~~---~~~~~~~~~~~~~~~~~~~~ 116 (660)
+|..|++++.+.+..|+.+.-++..--+-|+.- --+.|-. -+...|.+ |.+ -...|.--|-.|.+....+.
T Consensus 44 eK~~Lkqq~eEleaeyd~~R~Eldqtkeal~q~-~s~hkk~--~~~g~e~EesLLqESaakE~~yl~kI~eleneLKq~r 120 (772)
T KOG0999|consen 44 EKEDLKQQLEELEAEYDLARTELDQTKEALGQY-RSQHKKV--ARDGEEREESLLQESAAKEEYYLQKILELENELKQLR 120 (772)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHh--hccchhhHHHHHHHHHHhHHHHHHHHHHHHHHHHHHH
Confidence 466788888888888876655443322222211 1111211 22223322 222 13345555555555555555
Q ss_pred HhhhhHHHHHHHHHhhhhhhhhhhhhHHHHHHHHHHHhhhhhhh
Q 006114 117 KENAHLELEVEKILGELNHQKDQNNLKREKIVQLEISLKNSKQQ 160 (660)
Q Consensus 117 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 160 (660)
.+.++-..|-.+|.+..++-+..+.........|--+||+.|-+
T Consensus 121 ~el~~~q~E~erl~~~~sd~~e~~~~~E~qR~rlr~elKe~KfR 164 (772)
T KOG0999|consen 121 QELTNVQEENERLEKVHSDLKESNAAVEDQRRRLRDELKEYKFR 164 (772)
T ss_pred HHHHHHHHHHHHHHHHHHHhhhcchhhHHHHHHHHHHHHHHHHH
Confidence 55555666666666666666665555444444444444444433
No 288
>TIGR03007 pepcterm_ChnLen polysaccharide chain length determinant protein, PEP-CTERM locus subfamily. Members of this protein family belong to the family of polysaccharide chain length determinant proteins (pfam02706). All are found in species that encode the PEP-CTERM/exosortase system predicted to act in protein sorting in a number of Gram-negative bacteria, and are found near the epsH homolog that is the putative exosortase gene.
Probab=89.67 E-value=38 Score=38.57 Aligned_cols=134 Identities=17% Similarity=0.218 Sum_probs=77.9
Q ss_pred HHHHHHHHHHHHHHHHhhhhchHHHHHHHHHHHhhhhhhHHHH-hhhhhHHHHHHhhHHHHHHHHHHHHhhhhhhhhhhh
Q 006114 178 YEKKITELIKQLEIEHARSEGAEEQVDTMKKLISDNQKSIEQY-EMENSTYQKALADTTQLYEKKIAELNKKLEDEHACF 256 (660)
Q Consensus 178 ~~~~~~~l~~~l~~e~~~~~~~~~~~~~l~~~l~~~~~~~~~~-~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~ 256 (660)
+...+..+..++..-......++..+..|+.++....+..... ...+..+...|. ..+.+++++..+.-+.|-..
T Consensus 202 ~~~~l~~l~~~l~~~~~~l~~~~a~~~~l~~~l~~~~~~~~~~~~~~~~~l~~~l~----~l~~~l~~l~~~y~~~hP~v 277 (498)
T TIGR03007 202 YYSEISEAQEELEAARLELNEAIAQRDALKRQLGGEEPVLLAGSSVANSELDGRIE----ALEKQLDALRLRYTDKHPDV 277 (498)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCCcCcccccCCCchHHHHH----HHHHHHHHHHHHhcccChHH
Confidence 3355666666666666666666667777777666543221100 001122222222 35777888888888899999
Q ss_pred hhhHHhHHHHHHHhhhhhcccc--------chhHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHH
Q 006114 257 EGAVEQLDMVKKLLSDYQNSNQ--------GQKEVHELCVKLKETRQLHESAVYEVQTLKSEYKNLL 315 (660)
Q Consensus 257 ~~~~~~~~~~~~~~~~~~~~~~--------~~~e~~~Lk~~Le~e~~~~e~~e~E~~~lks~l~~l~ 315 (660)
-.+..|++.+++.+........ ...-...|...+.......+.+...+..|+.++.++.
T Consensus 278 ~~l~~qi~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~l~~~~~~l~~~~~~~~ 344 (498)
T TIGR03007 278 IATKREIAQLEEQKEEEGSAKNGGPERGEIANPVYQQLQIELAEAEAEIASLEARVAELTARIERLE 344 (498)
T ss_pred HHHHHHHHHHHHHHHhhccccccCcccccccChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999998865433221 1111244555555555566666655555555555443
No 289
>COG5116 RPN2 26S proteasome regulatory complex component [Posttranslational modification, protein turnover, chaperones]
Probab=89.63 E-value=2.3 Score=48.60 Aligned_cols=123 Identities=15% Similarity=0.119 Sum_probs=79.4
Q ss_pred CHHHHHHh-hCCCCHHHHHHHHHHHHHhhCCchhHHHHHHcCCHHHHHHHHccCCCHHHHHHHHHHHHHhhcCchhHHHH
Q 006114 408 GLPKILQL-LTSEDPDVQIHAVKVVANLAAEDINQEKIVEEGGLDALLLLLRTSQNTTILRVASGAIANLAMNEMNQGLI 486 (660)
Q Consensus 408 gI~~LV~L-L~s~d~~vr~~Aa~aL~nLa~~~en~~~Ive~GgI~~Lv~LL~~s~d~~v~~~Aa~AL~nLA~~~~n~~~I 486 (660)
.+..|+.. .+..+.+||+.|+-+|+.++..+.+ .++..+.+|..+.++-|+...+-+|+-.|.+...+.
T Consensus 552 vv~~lLh~avsD~nDDVrRAAViAlGfvc~~D~~--------~lv~tvelLs~shN~hVR~g~AvaLGiacag~G~~~-- 621 (926)
T COG5116 552 VVSTLLHYAVSDGNDDVRRAAVIALGFVCCDDRD--------LLVGTVELLSESHNFHVRAGVAVALGIACAGTGDKV-- 621 (926)
T ss_pred hHhhhheeecccCchHHHHHHHHheeeeEecCcc--------hhhHHHHHhhhccchhhhhhhHHHhhhhhcCCccHH--
Confidence 35555544 4567889999999999888775533 577788888888899999999999987776643222
Q ss_pred HhcCccHHHHHhhcCCCCHHHHHHHHHHHHHHh--cChhHHHHHHhccHHHHHHHHhcCCCHH
Q 006114 487 MSRGGGQLLAKTASKTDDPQTLRMVAGALANLC--GNEKLHTMLEEDGAIKALLAMVRSGNID 547 (660)
Q Consensus 487 ve~g~I~~Ll~LL~~s~d~~v~~~Aa~aLanLa--~~~~~r~~iv~~G~V~~Lv~lL~s~~~~ 547 (660)
++..|-.+..+ .+.-|+..|+-+++.+. .+|..-... .|.+..+..++...+.+
T Consensus 622 ----a~diL~~L~~D-~~dfVRQ~AmIa~~mIl~Q~n~~Lnp~v--~~I~k~f~~vI~~Khe~ 677 (926)
T COG5116 622 ----ATDILEALMYD-TNDFVRQSAMIAVGMILMQCNPELNPNV--KRIIKKFNRVIVDKHES 677 (926)
T ss_pred ----HHHHHHHHhhC-cHHHHHHHHHHHHHHHHhhcCcccChhH--HHHHHHHHHHHhhhhHh
Confidence 23445555544 45577777777777664 444333222 13445555555554443
No 290
>KOG2274 consensus Predicted importin 9 [Intracellular trafficking, secretion, and vesicular transport; Nuclear structure]
Probab=89.60 E-value=4.6 Score=48.49 Aligned_cols=183 Identities=15% Similarity=0.127 Sum_probs=116.4
Q ss_pred CCCHHHHHHHHHHHHHhhCCchhHHHHHHcCCHHHHHHHHccCCCHHHHHHHHHHHHHhhcCchhHHHHHhcCccHHHHH
Q 006114 418 SEDPDVQIHAVKVVANLAAEDINQEKIVEEGGLDALLLLLRTSQNTTILRVASGAIANLAMNEMNQGLIMSRGGGQLLAK 497 (660)
Q Consensus 418 s~d~~vr~~Aa~aL~nLa~~~en~~~Ive~GgI~~Lv~LL~~s~d~~v~~~Aa~AL~nLA~~~~n~~~Ive~g~I~~Ll~ 497 (660)
+..+.++..|+.+++..+.-... .-...+.+..|+.+.. ....++......+|+..+..+.--..-.+..+.|.++.
T Consensus 502 ~~~~~~ki~a~~~~~~~~~~~vl--~~~~p~ild~L~qlas-~~s~evl~llmE~Ls~vv~~dpef~as~~skI~P~~i~ 578 (1005)
T KOG2274|consen 502 DVPPPVKISAVRAFCGYCKVKVL--LSLQPMILDGLLQLAS-KSSDEVLVLLMEALSSVVKLDPEFAASMESKICPLTIN 578 (1005)
T ss_pred CCCCchhHHHHHHHHhccCceec--cccchHHHHHHHHHcc-cccHHHHHHHHHHHHHHhccChhhhhhhhcchhHHHHH
Confidence 55667777777777665531100 0112334556666665 44566777788888888776544445556667788777
Q ss_pred hh-cCCCCHHHHHHHHHHHHHHhcChhHHHHHHhccHHHHHHHHhcCCC----HHHHHHHHHHHHHhhccchhhhhhcch
Q 006114 498 TA-SKTDDPQTLRMVAGALANLCGNEKLHTMLEEDGAIKALLAMVRSGN----IDVIAQVARGLANFAKCESRAIVQGQR 572 (660)
Q Consensus 498 LL-~~s~d~~v~~~Aa~aLanLa~~~~~r~~iv~~G~V~~Lv~lL~s~~----~~v~~~Al~aLanLA~~~~~~~aq~~~ 572 (660)
++ +.+.||.|...+--++-.|+....+..-+.. -.+|.+++.|..++ +..+.-|+-+|..+....+..+.+
T Consensus 579 lF~k~s~DP~V~~~~qd~f~el~q~~~~~g~m~e-~~iPslisil~~~~~~~~~~l~~~aidvLttvvr~tp~pL~~--- 654 (1005)
T KOG2274|consen 579 LFLKYSEDPQVASLAQDLFEELLQIAANYGPMQE-RLIPSLISVLQLNADKAPAGLCAIAIDVLTTVLRNTPSPLPN--- 654 (1005)
T ss_pred HHHHhcCCchHHHHHHHHHHHHHHHHHhhcchHH-HHHHHHHHHHcCcccccCchhhHHHHHHHHHHHhcCCCCccH---
Confidence 65 3467887777777777777764444444443 47899999998665 667777888887776554322221
Q ss_pred hhhHHHhhcChHHHHHHh-hcCCCHHHHHHHHHHHHHhhcC
Q 006114 573 KGRSHLMEDSALEWLIAN-SKTNSASTRRHVELALCHLAQN 612 (660)
Q Consensus 573 e~r~~Li~~G~v~~Lv~l-L~s~d~~vr~~Aa~AL~nLa~~ 612 (660)
.+-.-+.|++.++ ++++|..+-.++..+|..+...
T Consensus 655 -----~l~~~~FpaVak~tlHsdD~~tlQ~~~EcLra~Is~ 690 (1005)
T KOG2274|consen 655 -----LLICYAFPAVAKITLHSDDHETLQNATECLRALISV 690 (1005)
T ss_pred -----HHHHHHhHHhHhheeecCChHHHHhHHHHHHHHHhc
Confidence 2223466777776 4556777888888888876543
No 291
>KOG0915 consensus Uncharacterized conserved protein [Function unknown]
Probab=89.56 E-value=1.2 Score=55.83 Aligned_cols=192 Identities=13% Similarity=0.075 Sum_probs=108.0
Q ss_pred chhhhhhcccCCCccccccchhhh---hhc--------CchhHHHHHhCCCHHHHH-HhhCCCCHHHHHHHHHHHHHhhC
Q 006114 369 DYISKGSSRFGAPMSLQKSNPSRE---LSG--------QRATIAKICDEVGLPKIL-QLLTSEDPDVQIHAVKVVANLAA 436 (660)
Q Consensus 369 g~i~~l~~~L~~~~~~vr~~~~~~---laa--------~~~~~~~I~e~ggI~~LV-~LL~s~d~~vr~~Aa~aL~nLa~ 436 (660)
.-|..++...||....+|..+-+. ++. .++...+-+-...+|.|+ .-+-|.-.++|+.+++++..|+.
T Consensus 1081 elw~~~fRvmDDIKEsVR~aa~~~~~~lsKl~vr~~d~~~~~~~~~~l~~iLPfLl~~gims~v~evr~~si~tl~dl~K 1160 (1702)
T KOG0915|consen 1081 ELWEAAFRVMDDIKESVREAADKAARALSKLCVRICDVTNGAKGKEALDIILPFLLDEGIMSKVNEVRRFSIGTLMDLAK 1160 (1702)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcccCCcccHHHHHHHHHHHHhccCcccchHHHHHHHHHHHHHHHH
Confidence 557777888888887788765332 111 122222223334566666 22227789999999999999998
Q ss_pred Cchh--HHHHHHcCCHHHHHHHHccCCCHHHHHHHHHHHHHhhcC--chhHHHHHh--------------------cCcc
Q 006114 437 EDIN--QEKIVEEGGLDALLLLLRTSQNTTILRVASGAIANLAMN--EMNQGLIMS--------------------RGGG 492 (660)
Q Consensus 437 ~~en--~~~Ive~GgI~~Lv~LL~~s~d~~v~~~Aa~AL~nLA~~--~~n~~~Ive--------------------~g~I 492 (660)
+... +..+.+ -||.|+..+..-.+..+-..++++ .|+... +..|..++. ...+
T Consensus 1161 ssg~~lkP~~~~--LIp~ll~~~s~lE~~vLnYls~r~-~~~e~ealDt~R~s~aksspmmeTi~~ci~~iD~~vLeeli 1237 (1702)
T KOG0915|consen 1161 SSGKELKPHFPK--LIPLLLNAYSELEPQVLNYLSLRL-INIETEALDTLRASAAKSSPMMETINKCINYIDISVLEELI 1237 (1702)
T ss_pred hchhhhcchhhH--HHHHHHHHccccchHHHHHHHHhh-hhhHHHHHHHHHHhhhcCCcHHHHHHHHHHhhhHHHHHHHH
Confidence 5422 333322 377777777533333322234444 333222 111221211 2356
Q ss_pred HHHHHhhcCCCCHHHHHHHHHHHHHHhcC-h-hHHHHHHhccHHHHHHHHhcCCCHHHHHHHHHHHHHhhccchh
Q 006114 493 QLLAKTASKTDDPQTLRMVAGALANLCGN-E-KLHTMLEEDGAIKALLAMVRSGNIDVIAQVARGLANFAKCESR 565 (660)
Q Consensus 493 ~~Ll~LL~~s~d~~v~~~Aa~aLanLa~~-~-~~r~~iv~~G~V~~Lv~lL~s~~~~v~~~Al~aLanLA~~~~~ 565 (660)
|.++.+++.+-....+..++..++-|+.. + +... -....+.+++..++..++.++.....+++.|+...+.
T Consensus 1238 p~l~el~R~sVgl~Tkvg~A~fI~~L~~r~~~emtP--~sgKll~al~~g~~dRNesv~kafAsAmG~L~k~Ss~ 1310 (1702)
T KOG0915|consen 1238 PRLTELVRGSVGLGTKVGCASFISLLVQRLGSEMTP--YSGKLLRALFPGAKDRNESVRKAFASAMGYLAKFSSP 1310 (1702)
T ss_pred HHHHHHHhccCCCCcchhHHHHHHHHHHHhccccCc--chhHHHHHHhhccccccHHHHHHHHHHHHHHHhcCCh
Confidence 66666665544444555566666665510 0 0000 0113566778888889999999999999999876654
No 292
>PF06008 Laminin_I: Laminin Domain I; InterPro: IPR009254 Laminins are glycoproteins that are major constituents of the basement membrane of cells. Laminins are trimeric molecules; laminin-1 is an alpha1 beta1 gamma1 trimer. It has been suggested that the domains I and II from laminin A, B1 and B2 may come together to form a triple helical coiled-coil structure []. Binding to cells via a high affinity receptor, laminin is thought to mediate the attachment, migration and organisation of cells into tissues during embryonic development by interacting with other extracellular matrix components.; GO: 0005102 receptor binding, 0030155 regulation of cell adhesion, 0030334 regulation of cell migration, 0045995 regulation of embryonic development, 0005606 laminin-1 complex
Probab=89.55 E-value=29 Score=36.24 Aligned_cols=106 Identities=21% Similarity=0.269 Sum_probs=67.4
Q ss_pred HHhhhhchHHHHHHHHHHHhhhhhhHHHHhhhhhHHHHHHhhHHHHHHHHHHHHhhhhhhhhhhhhhhHHhHHHHHHHhh
Q 006114 192 EHARSEGAEEQVDTMKKLISDNQKSIEQYEMENSTYQKALADTTQLYEKKIAELNKKLEDEHACFEGAVEQLDMVKKLLS 271 (660)
Q Consensus 192 e~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 271 (660)
=...+..+++|+..-+..|+..++-+...+.+|....+.+.+.-.-|..|...|..-|.+ |.....++..+..
T Consensus 144 f~~~~~~Ae~El~~A~~LL~~v~~~~~~~~~~~~~l~~~i~~~L~~~~~kL~Dl~~~l~e-------A~~~~~ea~~ln~ 216 (264)
T PF06008_consen 144 FTPQRQNAEDELKEAEDLLSRVQKWFQKPQQENESLAEAIRDDLNDYNAKLQDLRDLLNE-------AQNKTREAEDLNR 216 (264)
T ss_pred chhHHHHHHHHHHHHHHHHHHHHHHHhhHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHH
Confidence 456667888888888888888888888888888888888887777777777777666653 3333333333322
Q ss_pred hhhccccchhHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHhhhhc
Q 006114 272 DYQNSNQGQKEVHELCVKLKETRQLHESAVYEVQTLKSEYKNLLEEKETM 321 (660)
Q Consensus 272 ~~~~~~~~~~e~~~Lk~~Le~e~~~~e~~e~E~~~lks~l~~l~~~~~~~ 321 (660)
. -+.....+...-++|...+..+.+......+.
T Consensus 217 ~-----------------n~~~l~~~~~k~~~l~~~~~~~~~~L~~a~~~ 249 (264)
T PF06008_consen 217 A-----------------NQKNLEDLEKKKQELSEQQNEVSETLKEAEDL 249 (264)
T ss_pred H-----------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 2 22233334455555666666666555544433
No 293
>PF12325 TMF_TATA_bd: TATA element modulatory factor 1 TATA binding; InterPro: IPR022091 This is the C-terminal conserved coiled coil region of a family of TATA element modulatory factor 1 proteins conserved in eukaryotes []. The proteins bind to the TATA element of some RNA polymerase II promoters and repress their activity. by competing with the binding of TATA binding protein. TMF1_TATA_bd is the most conserved part of the TMFs []. TMFs are evolutionarily conserved golgins that bind Rab6, a ubiquitous ras-like GTP-binding Golgi protein, and contribute to Golgi organisation in animal [] and plant cells. The Rab6-binding domain appears to be the same region as this C-terminal family [].
Probab=89.53 E-value=10 Score=35.18 Aligned_cols=101 Identities=16% Similarity=0.257 Sum_probs=68.4
Q ss_pred HHHHHHhhHHHHHHHHHHHHHHHHHHhhhhchHHHHHHHHHHHhhhhhhHHHHhhhhhHHHHHHhhHHHHHHHHHHHHhh
Q 006114 168 QKVLADTTQMYEKKITELIKQLEIEHARSEGAEEQVDTMKKLISDNQKSIEQYEMENSTYQKALADTTQLYEKKIAELNK 247 (660)
Q Consensus 168 ~~~~~~~~~~~~~~~~~l~~~l~~e~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~ 247 (660)
.+.+.-++.++|-|+.-++.++..-...++.+.+|+..|-....+++ ...+.+..|..
T Consensus 18 ve~L~s~lr~~E~E~~~l~~el~~l~~~r~~l~~Eiv~l~~~~e~~~----------------------~~~~~~~~L~~ 75 (120)
T PF12325_consen 18 VERLQSQLRRLEGELASLQEELARLEAERDELREEIVKLMEENEELR----------------------ALKKEVEELEQ 75 (120)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----------------------HHHHHHHHHHH
Confidence 44677888888889888888888888888888888876654444443 34456666666
Q ss_pred hhhhhhhhhhhhHHhHHHHHHHhhhhhccccchhHHHHHHHHHHHHHHHHHhHHHH
Q 006114 248 KLEDEHACFEGAVEQLDMVKKLLSDYQNSNQGQKEVHELCVKLKETRQLHESAVYE 303 (660)
Q Consensus 248 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~Lk~~Le~e~~~~e~~e~E 303 (660)
++.+=..|+..+=+ =+-...+++.+|+.++++....|..+.++
T Consensus 76 el~~l~~ry~t~Le-------------llGEK~E~veEL~~Dv~DlK~myr~Qi~~ 118 (120)
T PF12325_consen 76 ELEELQQRYQTLLE-------------LLGEKSEEVEELRADVQDLKEMYREQIDQ 118 (120)
T ss_pred HHHHHHHHHHHHHH-------------HhcchHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 66666666665521 22334555677888888877777776643
No 294
>PF05918 API5: Apoptosis inhibitory protein 5 (API5); InterPro: IPR008383 This family consists of apoptosis inhibitory protein 5 (API5) sequences from several organisms. Apoptosis or programmed cell death is a physiological form of cell death that occurs in embryonic development and organ formation. It is characterised by biochemical and morphological changes such as DNA fragmentation and cell volume shrinkage. API5 is an anti apoptosis gene located in Homo sapiens chromosome 11, whose expression prevents the programmed cell death that occurs upon the deprivation of growth factors [,].; PDB: 3U0R_A 3V6A_A.
Probab=89.45 E-value=4 Score=47.15 Aligned_cols=99 Identities=17% Similarity=0.255 Sum_probs=70.3
Q ss_pred HHHHHhhcCCCCHHHHHHHHHHHHHHh-cChhHHHHHHhccHHHHHHHHhcCCCHHHHHHHHHHHHHhhccchhhhhhcc
Q 006114 493 QLLAKTASKTDDPQTLRMVAGALANLC-GNEKLHTMLEEDGAIKALLAMVRSGNIDVIAQVARGLANFAKCESRAIVQGQ 571 (660)
Q Consensus 493 ~~Ll~LL~~s~d~~v~~~Aa~aLanLa-~~~~~r~~iv~~G~V~~Lv~lL~s~~~~v~~~Al~aLanLA~~~~~~~aq~~ 571 (660)
..++...+ +++.+...|+..|.... ..|++.. .++.++++++...+..|+..|+..|..||.++++.++
T Consensus 26 ~~il~~~k--g~~k~K~Laaq~I~kffk~FP~l~~-----~Ai~a~~DLcEDed~~iR~~aik~lp~~ck~~~~~v~--- 95 (556)
T PF05918_consen 26 KEILDGVK--GSPKEKRLAAQFIPKFFKHFPDLQE-----EAINAQLDLCEDEDVQIRKQAIKGLPQLCKDNPEHVS--- 95 (556)
T ss_dssp HHHHHGGG--S-HHHHHHHHHHHHHHHCC-GGGHH-----HHHHHHHHHHT-SSHHHHHHHHHHGGGG--T--T-HH---
T ss_pred HHHHHHcc--CCHHHHHHHHHHHHHHHhhChhhHH-----HHHHHHHHHHhcccHHHHHHHHHhHHHHHHhHHHHHh---
Confidence 33444443 57889999999888776 7788776 4677899999999999999999999999998765544
Q ss_pred hhhhHHHhhcChHHHHHHhhcCCCHHHHHHHHHHHHHhhc
Q 006114 572 RKGRSHLMEDSALEWLIANSKTNSASTRRHVELALCHLAQ 611 (660)
Q Consensus 572 ~e~r~~Li~~G~v~~Lv~lL~s~d~~vr~~Aa~AL~nLa~ 611 (660)
.+++.|+.+|.++++.....+-.+|..|-.
T Consensus 96 ----------kvaDvL~QlL~tdd~~E~~~v~~sL~~ll~ 125 (556)
T PF05918_consen 96 ----------KVADVLVQLLQTDDPVELDAVKNSLMSLLK 125 (556)
T ss_dssp ----------HHHHHHHHHTT---HHHHHHHHHHHHHHHH
T ss_pred ----------HHHHHHHHHHhcccHHHHHHHHHHHHHHHh
Confidence 367889999999998888888888876643
No 295
>TIGR00634 recN DNA repair protein RecN. All proteins in this family for which functions are known are ATP binding proteins involved in the initiation of recombination and recombinational repair.
Probab=89.39 E-value=49 Score=38.58 Aligned_cols=86 Identities=23% Similarity=0.262 Sum_probs=65.1
Q ss_pred hhhhhhhhhhhhHHhHHHHHHHhhhhhccccchhHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHhhhhccHHHHH
Q 006114 248 KLEDEHACFEGAVEQLDMVKKLLSDYQNSNQGQKEVHELCVKLKETRQLHESAVYEVQTLKSEYKNLLEEKETMSDELQA 327 (660)
Q Consensus 248 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~Lk~~Le~e~~~~e~~e~E~~~lks~l~~l~~~~~~~~eel~~ 327 (660)
.++..-.+++.++++|..++++...|- .+-+++......++.+....+..+.++..|+.++.++...-...-.++..
T Consensus 295 ~l~~dp~~L~ele~RL~~l~~LkrKyg---~s~e~l~~~~~~l~~eL~~l~~~~~~le~L~~el~~l~~~l~~~a~~Ls~ 371 (563)
T TIGR00634 295 ELEFDPERLNEIEERLAQIKRLKRKYG---ASVEEVLEYAEKIKEELDQLDDSDESLEALEEEVDKLEEELDKAAVALSL 371 (563)
T ss_pred hCCCCHHHHHHHHHHHHHHHHHHHHhC---CCHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 445566788889999999999888765 46788888999999999988888888888888888777655555555555
Q ss_pred HHHHHHHHH
Q 006114 328 ARQRLLVEE 336 (660)
Q Consensus 328 ~~k~l~~e~ 336 (660)
.|+..-..+
T Consensus 372 ~R~~~a~~l 380 (563)
T TIGR00634 372 IRRKAAERL 380 (563)
T ss_pred HHHHHHHHH
Confidence 555544444
No 296
>COG1579 Zn-ribbon protein, possibly nucleic acid-binding [General function prediction only]
Probab=89.37 E-value=29 Score=35.99 Aligned_cols=53 Identities=21% Similarity=0.272 Sum_probs=37.1
Q ss_pred HHHHhhHHHHHHHHHHHHHHHHHHhhhhchHHHHHHHHHHHhhhhhhHHHHhh
Q 006114 170 VLADTTQMYEKKITELIKQLEIEHARSEGAEEQVDTMKKLISDNQKSIEQYEM 222 (660)
Q Consensus 170 ~~~~~~~~~~~~~~~l~~~l~~e~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~ 222 (660)
.+-..+.+++-.+++..+.|..-.+..+.+.+.+..++..+.++++.+.+++.
T Consensus 14 ~lD~e~~rl~~~~~~~~~~l~k~~~e~e~~~~~~~~~~~e~e~le~qv~~~e~ 66 (239)
T COG1579 14 KLDLEKDRLEPRIKEIRKALKKAKAELEALNKALEALEIELEDLENQVSQLES 66 (239)
T ss_pred HHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45556677777777778888777777777777777777777777755554443
No 297
>COG4942 Membrane-bound metallopeptidase [Cell division and chromosome partitioning]
Probab=89.02 E-value=43 Score=37.48 Aligned_cols=33 Identities=30% Similarity=0.390 Sum_probs=16.3
Q ss_pred HHHHHHHHHHhhhh---hhhh-hhhhhhHHhHHHHHH
Q 006114 236 QLYEKKIAELNKKL---EDEH-ACFEGAVEQLDMVKK 268 (660)
Q Consensus 236 ~~~~~~~~~~~~~~---~~~~-~~~~~~~~~~~~~~~ 268 (660)
+-.+++|+.+.+++ ++++ ++...+-++|+-+..
T Consensus 90 ~~~~~~I~~~~~~l~~l~~q~r~qr~~La~~L~A~~r 126 (420)
T COG4942 90 KKLRKQIADLNARLNALEVQEREQRRRLAEQLAALQR 126 (420)
T ss_pred HHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 34455555555443 3333 455555555555544
No 298
>COG5116 RPN2 26S proteasome regulatory complex component [Posttranslational modification, protein turnover, chaperones]
Probab=89.00 E-value=5.2 Score=45.86 Aligned_cols=125 Identities=17% Similarity=0.147 Sum_probs=82.2
Q ss_pred cCccHHHHHhhcCCCCHHHHHHHHHHHHHHhcChhHHHHHHhccHHHHHHHHhc-CCCHHHHHHHHHHHHHhhccchhhh
Q 006114 489 RGGGQLLAKTASKTDDPQTLRMVAGALANLCGNEKLHTMLEEDGAIKALLAMVR-SGNIDVIAQVARGLANFAKCESRAI 567 (660)
Q Consensus 489 ~g~I~~Ll~LL~~s~d~~v~~~Aa~aLanLa~~~~~r~~iv~~G~V~~Lv~lL~-s~~~~v~~~Al~aLanLA~~~~~~~ 567 (660)
.|+|..|+...-+..+.+|++.|..||.-+|..+ ...++..+++|. +.|+.|+.-.+.+|+-.|+....
T Consensus 550 ~~vv~~lLh~avsD~nDDVrRAAViAlGfvc~~D--------~~~lv~tvelLs~shN~hVR~g~AvaLGiacag~G~-- 619 (926)
T COG5116 550 LGVVSTLLHYAVSDGNDDVRRAAVIALGFVCCDD--------RDLLVGTVELLSESHNFHVRAGVAVALGIACAGTGD-- 619 (926)
T ss_pred chhHhhhheeecccCchHHHHHHHHheeeeEecC--------cchhhHHHHHhhhccchhhhhhhHHHhhhhhcCCcc--
Confidence 3566777776434467799999999998887533 235666677765 67888999889999888865421
Q ss_pred hhcchhhhHHHhhcChHHHHHHhhcCCCHHHHHHHHHHHHHhhc--CCccHHHHHhcCcHHHHHHHHhcCChH
Q 006114 568 VQGQRKGRSHLMEDSALEWLIANSKTNSASTRRHVELALCHLAQ--NEDNARDFISRGGAKELVQISIESSRE 638 (660)
Q Consensus 568 aq~~~e~r~~Li~~G~v~~Lv~lL~s~d~~vr~~Aa~AL~nLa~--~~e~~~~Ive~G~l~~Lv~lL~s~s~~ 638 (660)
.-++..|-+++.+..+-||..|+.++.-+.. +++....+ .|++..+.+++.....+
T Consensus 620 -------------~~a~diL~~L~~D~~dfVRQ~AmIa~~mIl~Q~n~~Lnp~v--~~I~k~f~~vI~~Khe~ 677 (926)
T COG5116 620 -------------KVATDILEALMYDTNDFVRQSAMIAVGMILMQCNPELNPNV--KRIIKKFNRVIVDKHES 677 (926)
T ss_pred -------------HHHHHHHHHHhhCcHHHHHHHHHHHHHHHHhhcCcccChhH--HHHHHHHHHHHhhhhHh
Confidence 2245667777888889999999999887743 22221111 23445555555544433
No 299
>PF12719 Cnd3: Nuclear condensing complex subunits, C-term domain
Probab=88.96 E-value=8.6 Score=40.90 Aligned_cols=186 Identities=16% Similarity=0.146 Sum_probs=113.1
Q ss_pred CHHHHH-HhhCCCCHHHHHHHHHHHHHhhC-CchhHHHHHHcCCHHHHHHHHccCCCHHHHHHHHHHHHHhhcC--chhH
Q 006114 408 GLPKIL-QLLTSEDPDVQIHAVKVVANLAA-EDINQEKIVEEGGLDALLLLLRTSQNTTILRVASGAIANLAMN--EMNQ 483 (660)
Q Consensus 408 gI~~LV-~LL~s~d~~vr~~Aa~aL~nLa~-~~en~~~Ive~GgI~~Lv~LL~~s~d~~v~~~Aa~AL~nLA~~--~~n~ 483 (660)
.+..|| ..+.+.++.+|..|+.+|+-++. +..... ..++.+...+. ..++.++..|+.+|..+... ...-
T Consensus 27 ll~~lI~P~v~~~~~~vR~~al~cLGl~~Lld~~~a~-----~~l~l~~~~~~-~~~~~v~~~al~~l~Dll~~~g~~~~ 100 (298)
T PF12719_consen 27 LLDSLILPAVQSSDPAVRELALKCLGLCCLLDKELAK-----EHLPLFLQALQ-KDDEEVKITALKALFDLLLTHGIDIF 100 (298)
T ss_pred HHHHHHHHHhcCCCHHHHHHHHHHHHHHHHhChHHHH-----HHHHHHHHHHH-hCCHHHHHHHHHHHHHHHHHcCchhc
Confidence 345555 67789999999999999998887 442221 13777888886 45889999999999988643 2211
Q ss_pred HH-------HHhcCccHHHHHhhcCCCCHHHHHHHHHHHHHHhcChhHHHHHHhccHHHHHHHHhcC----CCHHHHHHH
Q 006114 484 GL-------IMSRGGGQLLAKTASKTDDPQTLRMVAGALANLCGNEKLHTMLEEDGAIKALLAMVRS----GNIDVIAQV 552 (660)
Q Consensus 484 ~~-------Ive~g~I~~Ll~LL~~s~d~~v~~~Aa~aLanLa~~~~~r~~iv~~G~V~~Lv~lL~s----~~~~v~~~A 552 (660)
.. ....+.+..+...+.+ .++.++..|+.+++.|-....... ...++..|+-+..+ .++.++..-
T Consensus 101 ~~~~~~~~~~~~~~l~~~l~~~l~~-~~~~~~~~a~EGl~KLlL~~~i~~---~~~vL~~Lll~yF~p~t~~~~~LrQ~L 176 (298)
T PF12719_consen 101 DSESDNDESVDSKSLLKILTKFLDS-ENPELQAIAVEGLCKLLLSGRISD---PPKVLSRLLLLYFNPSTEDNQRLRQCL 176 (298)
T ss_pred cchhccCccchHhHHHHHHHHHHhc-CCHHHHHHHHHHHHHHHhcCCCCc---HHHHHHHHHHHHcCcccCCcHHHHHHH
Confidence 11 1224456677777764 688999999999998863322211 13445555444332 234444444
Q ss_pred HHHHHHhhccchhhhhhcchhhhHHHhhcChHHHHHHhhcCCCH------HH-HHHHHHHHHHhhcC
Q 006114 553 ARGLANFAKCESRAIVQGQRKGRSHLMEDSALEWLIANSKTNSA------ST-RRHVELALCHLAQN 612 (660)
Q Consensus 553 l~aLanLA~~~~~~~aq~~~e~r~~Li~~G~v~~Lv~lL~s~d~------~v-r~~Aa~AL~nLa~~ 612 (660)
...+-.+|..++ .. ...+..+.+|.+..+....++ .+ -..++..+..++..
T Consensus 177 ~~Ffp~y~~s~~--------~~-Q~~l~~~f~~~l~~~~~~~~~~~~~~~~v~~~~v~~~lv~lt~~ 234 (298)
T PF12719_consen 177 SVFFPVYASSSP--------EN-QERLAEAFLPTLRTLSNAPDELDSPLAMVSPSQVASFLVDLTDP 234 (298)
T ss_pred HHHHHHHHcCCH--------HH-HHHHHHHHHHHHHHHHhCcccccCchhhCCHHHHHHHHHHHCCh
Confidence 444556665432 22 345566777777776655322 11 23455556666543
No 300
>KOG1058 consensus Vesicle coat complex COPI, beta subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=88.67 E-value=4.7 Score=47.56 Aligned_cols=134 Identities=15% Similarity=0.148 Sum_probs=75.0
Q ss_pred CHHHHHHhhCCCCHHHHHHHHHHHHHhhCCchhHHHHHHcCCHHHHHHHHccCCCHHHHHHHHHHHHHhhcCchhHHHHH
Q 006114 408 GLPKILQLLTSEDPDVQIHAVKVVANLAAEDINQEKIVEEGGLDALLLLLRTSQNTTILRVASGAIANLAMNEMNQGLIM 487 (660)
Q Consensus 408 gI~~LV~LL~s~d~~vr~~Aa~aL~nLa~~~en~~~Ive~GgI~~Lv~LL~~s~d~~v~~~Aa~AL~nLA~~~~n~~~Iv 487 (660)
.+|.+...|.+.+..||++|+-+++.|-..-+ ..+ .++-..+-..|....||.++++|...|..+ +|+.
T Consensus 135 l~p~IracleHrhsYVRrNAilaifsIyk~~~--~L~--pDapeLi~~fL~~e~DpsCkRNAFi~L~~~--D~Er----- 203 (948)
T KOG1058|consen 135 LMPSIRACLEHRHSYVRRNAILAIFSIYKNFE--HLI--PDAPELIESFLLTEQDPSCKRNAFLMLFTT--DPER----- 203 (948)
T ss_pred hHHHHHHHHhCcchhhhhhhheeehhHHhhhh--hhc--CChHHHHHHHHHhccCchhHHHHHHHHHhc--CHHH-----
Confidence 46666677778888888888888877665310 011 122333345555567788888777666543 3321
Q ss_pred hcCccHHHHHhhcC--CCCHHHHHHHHHHHHHHh-cChhHHHHHHhccHHHHHHHHhcCCCHHHHHHHHHHHHHhh
Q 006114 488 SRGGGQLLAKTASK--TDDPQTLRMVAGALANLC-GNEKLHTMLEEDGAIKALLAMVRSGNIDVIAQVARGLANFA 560 (660)
Q Consensus 488 e~g~I~~Ll~LL~~--s~d~~v~~~Aa~aLanLa-~~~~~r~~iv~~G~V~~Lv~lL~s~~~~v~~~Al~aLanLA 560 (660)
++..|...... +.++..+......|...| .+|..+. ..+..++.+|.++++.|...|+++|.+++
T Consensus 204 ---Al~Yl~~~idqi~~~~~~LqlViVE~Irkv~~~~p~~~~-----~~i~~i~~lL~stssaV~fEaa~tlv~lS 271 (948)
T KOG1058|consen 204 ---ALNYLLSNIDQIPSFNDSLQLVIVELIRKVCLANPAEKA-----RYIRCIYNLLSSTSSAVIFEAAGTLVTLS 271 (948)
T ss_pred ---HHHHHHhhHhhccCccHHHHHHHHHHHHHHHhcCHHHhh-----HHHHHHHHHHhcCCchhhhhhcceEEEcc
Confidence 22333332211 123344444445555555 2333333 34556777777777777777777776655
No 301
>KOG0915 consensus Uncharacterized conserved protein [Function unknown]
Probab=88.66 E-value=15 Score=46.62 Aligned_cols=150 Identities=19% Similarity=0.119 Sum_probs=87.5
Q ss_pred HHHHHHhhCCCCHHHHHHHHHHHHHhhCCchhHHHHHHcCCHHHHHHHHccCCCHHHHHHHHHHHHHhhcCchhHHHHHh
Q 006114 409 LPKILQLLTSEDPDVQIHAVKVVANLAAEDINQEKIVEEGGLDALLLLLRTSQNTTILRVASGAIANLAMNEMNQGLIMS 488 (660)
Q Consensus 409 I~~LV~LL~s~d~~vr~~Aa~aL~nLa~~~en~~~Ive~GgI~~Lv~LL~~s~d~~v~~~Aa~AL~nLA~~~~n~~~Ive 488 (660)
||+|.+.=-+|+..||..-..+-..|..++.+..--.-...+.-|+.-|. +..=.||+.+|.||..|-.++++-...-
T Consensus 1000 IPrLyRY~yDP~~~Vq~aM~sIW~~Li~D~k~~vd~y~neIl~eLL~~lt-~kewRVReasclAL~dLl~g~~~~~~~e- 1077 (1702)
T KOG0915|consen 1000 IPRLYRYQYDPDKKVQDAMTSIWNALITDSKKVVDEYLNEILDELLVNLT-SKEWRVREASCLALADLLQGRPFDQVKE- 1077 (1702)
T ss_pred hHHHhhhccCCcHHHHHHHHHHHHHhccChHHHHHHHHHHHHHHHHHhcc-chhHHHHHHHHHHHHHHHcCCChHHHHH-
Confidence 55555554588999998887766667776533221111224555666664 5566799999999999988855433322
Q ss_pred cCccHHHHHhhcC---CCCHHHHHHHH---HHHHHHh---cCh---hHHHHHHhccHHHHHHH--HhcCCCHHHHHHHHH
Q 006114 489 RGGGQLLAKTASK---TDDPQTLRMVA---GALANLC---GNE---KLHTMLEEDGAIKALLA--MVRSGNIDVIAQVAR 554 (660)
Q Consensus 489 ~g~I~~Ll~LL~~---s~d~~v~~~Aa---~aLanLa---~~~---~~r~~iv~~G~V~~Lv~--lL~s~~~~v~~~Al~ 554 (660)
-+|.+|..+-. .-...|+..|- .+|+.+| .++ .-...+. +.++|.|++ ++ +.-++++..++.
T Consensus 1078 --~lpelw~~~fRvmDDIKEsVR~aa~~~~~~lsKl~vr~~d~~~~~~~~~~l-~~iLPfLl~~gim-s~v~evr~~si~ 1153 (1702)
T KOG0915|consen 1078 --KLPELWEAAFRVMDDIKESVREAADKAARALSKLCVRICDVTNGAKGKEAL-DIILPFLLDEGIM-SKVNEVRRFSIG 1153 (1702)
T ss_pred --HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcccCCcccHHHHH-HHHHHHHhccCcc-cchHHHHHHHHH
Confidence 23444443322 12334555443 4555555 111 1111111 234555552 23 778899999999
Q ss_pred HHHHhhccch
Q 006114 555 GLANFAKCES 564 (660)
Q Consensus 555 aLanLA~~~~ 564 (660)
++.-++...+
T Consensus 1154 tl~dl~Kssg 1163 (1702)
T KOG0915|consen 1154 TLMDLAKSSG 1163 (1702)
T ss_pred HHHHHHHhch
Confidence 9999997654
No 302
>KOG1077 consensus Vesicle coat complex AP-2, alpha subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=88.63 E-value=16 Score=43.18 Aligned_cols=153 Identities=12% Similarity=0.144 Sum_probs=83.3
Q ss_pred CCCHHHHHHHHHHHHHhhcC-chhHH------------------HHHhcCccHHHHHhhcCCCCHHHHHHHHHHHHHHhc
Q 006114 460 SQNTTILRVASGAIANLAMN-EMNQG------------------LIMSRGGGQLLAKTASKTDDPQTLRMVAGALANLCG 520 (660)
Q Consensus 460 s~d~~v~~~Aa~AL~nLA~~-~~n~~------------------~Ive~g~I~~Ll~LL~~s~d~~v~~~Aa~aLanLa~ 520 (660)
++.+++...|+..|+.+-.+ +.|-. .+-.+ ...++..|+...|..+++.|+-.|..+|.
T Consensus 321 D~e~~ll~~~~~~Lg~fls~rE~NiRYLaLEsm~~L~ss~~s~davK~h--~d~Ii~sLkterDvSirrravDLLY~mcD 398 (938)
T KOG1077|consen 321 DSEPELLSRAVNQLGQFLSHRETNIRYLALESMCKLASSEFSIDAVKKH--QDTIINSLKTERDVSIRRRAVDLLYAMCD 398 (938)
T ss_pred CCcHHHHHHHHHHHHHHhhcccccchhhhHHHHHHHHhccchHHHHHHH--HHHHHHHhccccchHHHHHHHHHHHHHhc
Confidence 34566666677777666554 22221 11111 44556666645788889999988888885
Q ss_pred ChhHHHHHHhccHHHHHHHHhcCCCHHHHHHHHHHHHHhhcc---chhhhhhcchhhhH------HHhhcChHHHHHHhh
Q 006114 521 NEKLHTMLEEDGAIKALLAMVRSGNIDVIAQVARGLANFAKC---ESRAIVQGQRKGRS------HLMEDSALEWLIANS 591 (660)
Q Consensus 521 ~~~~r~~iv~~G~V~~Lv~lL~s~~~~v~~~Al~aLanLA~~---~~~~~aq~~~e~r~------~Li~~G~v~~Lv~lL 591 (660)
... ... .|.-|+.++.+.+..+++..+.=++-||.- +-.|. +...-. .+.++++-..++...
T Consensus 399 ~~N-ak~-----IV~elLqYL~tAd~sireeivlKvAILaEKyAtDy~Wy---VdviLqLiriagd~vsdeVW~RvvQiV 469 (938)
T KOG1077|consen 399 VSN-AKQ-----IVAELLQYLETADYSIREEIVLKVAILAEKYATDYSWY---VDVILQLIRIAGDYVSDEVWYRVVQIV 469 (938)
T ss_pred hhh-HHH-----HHHHHHHHHhhcchHHHHHHHHHHHHHHHHhcCCcchh---HHHHHHHHHHhcccccHHHHHHhheeE
Confidence 332 232 345677777778887777766655555521 11110 000000 112233333333333
Q ss_pred cCCCHHHHHHHHHHHHHhhcCCccHHHHHhcCc
Q 006114 592 KTNSASTRRHVELALCHLAQNEDNARDFISRGG 624 (660)
Q Consensus 592 ~s~d~~vr~~Aa~AL~nLa~~~e~~~~Ive~G~ 624 (660)
- .++.++..|+..+...-..+..+..|++.||
T Consensus 470 v-Nnedlq~yaak~~fe~Lq~~a~hE~mVKvgg 501 (938)
T KOG1077|consen 470 V-NNEDLQGYAAKRLFEYLQKPACHENMVKVGG 501 (938)
T ss_pred e-cchhhhHHHHHHHHHHHhhhHHHHHHHHhhh
Confidence 2 3567778888777766555555566665444
No 303
>TIGR03007 pepcterm_ChnLen polysaccharide chain length determinant protein, PEP-CTERM locus subfamily. Members of this protein family belong to the family of polysaccharide chain length determinant proteins (pfam02706). All are found in species that encode the PEP-CTERM/exosortase system predicted to act in protein sorting in a number of Gram-negative bacteria, and are found near the epsH homolog that is the putative exosortase gene.
Probab=88.48 E-value=41 Score=38.28 Aligned_cols=27 Identities=19% Similarity=0.094 Sum_probs=15.8
Q ss_pred hHHHHHHHHHHHhhhhhhhhhhhhhhH
Q 006114 142 LKREKIVQLEISLKNSKQQQLDNSSYQ 168 (660)
Q Consensus 142 ~~~~~~~~~~~~~~~~~~~~~~~~~~~ 168 (660)
.+..++.+++.++........++.-..
T Consensus 251 ~l~~~l~~l~~~l~~l~~~y~~~hP~v 277 (498)
T TIGR03007 251 ELDGRIEALEKQLDALRLRYTDKHPDV 277 (498)
T ss_pred chHHHHHHHHHHHHHHHHHhcccChHH
Confidence 455566666666666666555555444
No 304
>PF06025 DUF913: Domain of Unknown Function (DUF913); InterPro: IPR010314 This is a domain of unknown function found towards the N terminus of a family of E3 ubiquitin protein ligases, including yeast TOM1, many of which appear to play a role in mRNA transcription and processing. This domain is found in association with and immediately C-terminal to another domain of unknown function: IPR010309 from INTERPRO.
Probab=88.44 E-value=22 Score=39.41 Aligned_cols=160 Identities=13% Similarity=0.179 Sum_probs=105.1
Q ss_pred HHHHHHHHhhC-CchhHHHHHHcCCHHHHHHHHcc------C-------------------CC--------HHHHHHHHH
Q 006114 426 HAVKVVANLAA-EDINQEKIVEEGGLDALLLLLRT------S-------------------QN--------TTILRVASG 471 (660)
Q Consensus 426 ~Aa~aL~nLa~-~~en~~~Ive~GgI~~Lv~LL~~------s-------------------~d--------~~v~~~Aa~ 471 (660)
.|+.+|-.+.. .+..-..+.+.||+..++..|.. . .+ ..+.+....
T Consensus 3 ~av~~ld~~~~~~~~a~~~f~~~~G~~~li~rl~~Ev~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~r~~llK~lLk 82 (379)
T PF06025_consen 3 RAVRFLDTFIDSSPDAFAAFRNLNGLDILIDRLQYEVDFALEENKNEEAGSGIPPEYKESSVDGYSISYQRQQLLKSLLK 82 (379)
T ss_pred HHHHHHHHHHhccHHHHHHHHhCCCHHHHHHHHHHHHHHHHhcccccCCCCCCCCCcccccccccccCHHHHHHHHHHHH
Confidence 35555655555 34445666788888888777631 0 00 022233334
Q ss_pred HHHHhhc-CchhHHH---HHhcCcc-HHHHHhhcCC--CCHHHHHHHHHHHHHHh-cChhHHHHHHhccHHHHHHHHhc-
Q 006114 472 AIANLAM-NEMNQGL---IMSRGGG-QLLAKTASKT--DDPQTLRMVAGALANLC-GNEKLHTMLEEDGAIKALLAMVR- 542 (660)
Q Consensus 472 AL~nLA~-~~~n~~~---Ive~g~I-~~Ll~LL~~s--~d~~v~~~Aa~aLanLa-~~~~~r~~iv~~G~V~~Lv~lL~- 542 (660)
+|..+.. .+.+... +++.+.+ ..|..++.+. -.+.+...|+.++..+. ..|..-..+.+.|.++.++..+.
T Consensus 83 ~l~~~~~~~~~~~~~lrnl~D~s~L~~sL~~Il~n~~~FG~~v~s~a~~ivs~~I~nePT~~~~l~e~Gl~~~~L~~i~~ 162 (379)
T PF06025_consen 83 FLSHAMQHSGGFGDRLRNLIDSSSLLSSLKHILENPEVFGPSVFSLAINIVSDFIHNEPTSFSILQEAGLIDAFLDAITA 162 (379)
T ss_pred HHHHHhccCCCcccccccccchhhHHHHHHHHHhCccccchHHHHHHHHHHHHHHhcCCchhHHHHHcCChHHHHHHHhc
Confidence 4444444 3232222 3332443 4455555543 34678888888999888 55666777888999999999887
Q ss_pred ---CCCHHHHHHHHHHHHHhhccchhhhhhcchhhhHHHhhcChHHHHHHhhcCC
Q 006114 543 ---SGNIDVIAQVARGLANFAKCESRAIVQGQRKGRSHLMEDSALEWLIANSKTN 594 (660)
Q Consensus 543 ---s~~~~v~~~Al~aLanLA~~~~~~~aq~~~e~r~~Li~~G~v~~Lv~lL~s~ 594 (660)
.++.++....-.+|+.||-+ ..|...+.+.+.++.++..+.+.
T Consensus 163 ~~i~~s~e~l~~lP~~l~AicLN---------~~Gl~~~~~~~~l~~~f~if~s~ 208 (379)
T PF06025_consen 163 KGILPSSEVLTSLPNVLSAICLN---------NRGLEKVKSSNPLDKLFEIFTSP 208 (379)
T ss_pred cCCCCcHHHHHHHHHHHhHHhcC---------HHHHHHHHhcChHHHHHHHhCCH
Confidence 35678888888999999965 56888899999999999988775
No 305
>PF12325 TMF_TATA_bd: TATA element modulatory factor 1 TATA binding; InterPro: IPR022091 This is the C-terminal conserved coiled coil region of a family of TATA element modulatory factor 1 proteins conserved in eukaryotes []. The proteins bind to the TATA element of some RNA polymerase II promoters and repress their activity. by competing with the binding of TATA binding protein. TMF1_TATA_bd is the most conserved part of the TMFs []. TMFs are evolutionarily conserved golgins that bind Rab6, a ubiquitous ras-like GTP-binding Golgi protein, and contribute to Golgi organisation in animal [] and plant cells. The Rab6-binding domain appears to be the same region as this C-terminal family [].
Probab=88.43 E-value=14 Score=34.22 Aligned_cols=91 Identities=21% Similarity=0.242 Sum_probs=50.6
Q ss_pred hHHHHhhhhHHHHHHHHHhhhhhhhhhhhhHHHHHHHHHHHhhhhhhhhhhhhhhHHHHHHhhHHHHHHHHHHHHHHHHH
Q 006114 113 EFLEKENAHLELEVEKILGELNHQKDQNNLKREKIVQLEISLKNSKQQQLDNSSYQKVLADTTQMYEKKITELIKQLEIE 192 (660)
Q Consensus 113 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~e 192 (660)
|+|....++++-|+--+..++..-....+.+.+++..|-.+.. ..+........++.++++|...++.=
T Consensus 19 e~L~s~lr~~E~E~~~l~~el~~l~~~r~~l~~Eiv~l~~~~e-----------~~~~~~~~~~~L~~el~~l~~ry~t~ 87 (120)
T PF12325_consen 19 ERLQSQLRRLEGELASLQEELARLEAERDELREEIVKLMEENE-----------ELRALKKEVEELEQELEELQQRYQTL 87 (120)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----------HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3455556666666666666665555555555555555421111 11233344455556666666665555
Q ss_pred HhhhhchHHHHHHHHHHHhhhh
Q 006114 193 HARSEGAEEQVDTMKKLISDNQ 214 (660)
Q Consensus 193 ~~~~~~~~~~~~~l~~~l~~~~ 214 (660)
-.-..--.+++..|+.-+.|++
T Consensus 88 LellGEK~E~veEL~~Dv~DlK 109 (120)
T PF12325_consen 88 LELLGEKSEEVEELRADVQDLK 109 (120)
T ss_pred HHHhcchHHHHHHHHHHHHHHH
Confidence 5555555677777777777776
No 306
>KOG1060 consensus Vesicle coat complex AP-3, beta subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=88.38 E-value=11 Score=44.95 Aligned_cols=137 Identities=10% Similarity=0.051 Sum_probs=83.5
Q ss_pred HHHHHHHHccCCCHHHHHHHHHHHHHhhcCchhHHHHHhcCccHHHHHhhcCCCCHHHHHHHHHHHHHHh-cChhHHHHH
Q 006114 450 LDALLLLLRTSQNTTILRVASGAIANLAMNEMNQGLIMSRGGGQLLAKTASKTDDPQTLRMVAGALANLC-GNEKLHTML 528 (660)
Q Consensus 450 I~~Lv~LL~~s~d~~v~~~Aa~AL~nLA~~~~n~~~Ive~g~I~~Ll~LL~~s~d~~v~~~Aa~aLanLa-~~~~~r~~i 528 (660)
|..+=..|. ++|+-+|..|.++|..|=. .++..=++-++-.+.. .+.|-|+..||.||-.|= .+++.
T Consensus 110 IntfQk~L~-DpN~LiRasALRvlSsIRv------p~IaPI~llAIk~~~~-D~s~yVRk~AA~AIpKLYsLd~e~---- 177 (968)
T KOG1060|consen 110 INTFQKALK-DPNQLIRASALRVLSSIRV------PMIAPIMLLAIKKAVT-DPSPYVRKTAAHAIPKLYSLDPEQ---- 177 (968)
T ss_pred HHHHHhhhc-CCcHHHHHHHHHHHHhcch------hhHHHHHHHHHHHHhc-CCcHHHHHHHHHhhHHHhcCChhh----
Confidence 444445555 6778888777777776521 1111111222223333 366788888888887663 22211
Q ss_pred HhccHHHHHHHHhcCCCHHHHHHHHHHHHHhhccchhhhhhcchhhhHHHhhcChHHHHHHhhcCCCHHHHHHHHHHHHH
Q 006114 529 EEDGAIKALLAMVRSGNIDVIAQVARGLANFAKCESRAIVQGQRKGRSHLMEDSALEWLIANSKTNSASTRRHVELALCH 608 (660)
Q Consensus 529 v~~G~V~~Lv~lL~s~~~~v~~~Al~aLanLA~~~~~~~aq~~~e~r~~Li~~G~v~~Lv~lL~s~d~~vr~~Aa~AL~n 608 (660)
....+..+-.+|...+|.|...|+++.-.+|-.. .=+-++-...|.+++.+-+++-+..+...|..
T Consensus 178 -k~qL~e~I~~LLaD~splVvgsAv~AF~evCPer-------------ldLIHknyrklC~ll~dvdeWgQvvlI~mL~R 243 (968)
T KOG1060|consen 178 -KDQLEEVIKKLLADRSPLVVGSAVMAFEEVCPER-------------LDLIHKNYRKLCRLLPDVDEWGQVVLINMLTR 243 (968)
T ss_pred -HHHHHHHHHHHhcCCCCcchhHHHHHHHHhchhH-------------HHHhhHHHHHHHhhccchhhhhHHHHHHHHHH
Confidence 2244555556666778888888888887777321 11235667788888888888888778888887
Q ss_pred hhcC
Q 006114 609 LAQN 612 (660)
Q Consensus 609 La~~ 612 (660)
-|.+
T Consensus 244 YAR~ 247 (968)
T KOG1060|consen 244 YARH 247 (968)
T ss_pred HHHh
Confidence 7774
No 307
>PF01347 Vitellogenin_N: Lipoprotein amino terminal region; InterPro: IPR001747 This entry represents a conserved region found in several lipid transport proteins, including vitellogenin, microsomal triglyceride transfer protein and apolipoprotein B-100 []. Vitellinogen precursors provide the major egg yolk proteins that are a source of nutrients during early development of oviparous vertebrates and invertebrates. Vitellinogen precursors are multi-domain apolipoproteins that are cleaved into distinct yolk proteins. Different vitellinogen precursors exist, which are composed of variable combinations of yolk protein components; however, the cleavage sites are conserved. In vertebrates, a complete vitellinogen is composed of an N-terminal signal peptide for export, followed by four regions that can be cleaved into yolk proteins: lipovitellin-1, phosvitin, lipovitellin-2, and a von Willebrand factor type D domain (YGP40) [, ]. Microsomal triglyceride transfer protein (MTTP) is an endoplasmic reticulum lipid transfer protein involved in the biosynthesis and lipid loading of apolipoprotein B. MTTP is also involved in the late stage of CD1d trafficking in the lysosomal compartment, CD1d being the MHC I-like lipid antigen presenting molecule []. Apolipoprotein B can exist in two forms: B-100 and B-48. Apoliporotein B-100 is present on several lipoproteins, including very low-density lipoproteins (VLDL), intermediate density lipoproteins (IDL) and low density lipoproteins (LDL), and can assemble VLDL particles in the liver []. Apolipoprotein B-100 has been linked to the development of atherosclerosis.; GO: 0005319 lipid transporter activity, 0006869 lipid transport; PDB: 1LSH_A.
Probab=88.37 E-value=6.6 Score=45.89 Aligned_cols=163 Identities=15% Similarity=0.100 Sum_probs=92.8
Q ss_pred HHHHHHHHcc---CCCHHHHHHHHHHHHHhhcC-ch---------hHHHHHhcCccHHHHHhhc---CCCCHHHHHHHHH
Q 006114 450 LDALLLLLRT---SQNTTILRVASGAIANLAMN-EM---------NQGLIMSRGGGQLLAKTAS---KTDDPQTLRMVAG 513 (660)
Q Consensus 450 I~~Lv~LL~~---s~d~~v~~~Aa~AL~nLA~~-~~---------n~~~Ive~g~I~~Ll~LL~---~s~d~~v~~~Aa~ 513 (660)
+..+..++.. ..++.++..|+.+++.+... .. .....+....++.+...+. ...+......++.
T Consensus 433 l~~l~~L~~~~~~~~~~~l~~ta~L~~~~lv~~~c~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~Lk 512 (618)
T PF01347_consen 433 LKELFELAKSPKVKNSPYLRETALLSLGSLVHKYCVNSDSAEFCDPCSRCIIEKYVPYLEQELKEAVSRGDEEEKIVYLK 512 (618)
T ss_dssp HHHHHHHHT-HHHHT-HHHHHHHHHHHHHHHHHHHTT-----------SS--GGGTHHHHHHHHHHHHTT-HHHHHHHHH
T ss_pred HHHHHHHHhCccccCChhHHHHHHHHHHHHhCceeecccccccccccchhhHHHHHHHHHHHHHHHhhccCHHHHHHHHH
Confidence 4445555542 23566777777777777543 11 1122223446677776665 3456677778889
Q ss_pred HHHHHhcChhHHHHHHhccHHHHHHHHhcCC---CHHHHHHHHHHHHHhhccchhhhhhcchhhhHHHhhcChHHHHHHh
Q 006114 514 ALANLCGNEKLHTMLEEDGAIKALLAMVRSG---NIDVIAQVARGLANFAKCESRAIVQGQRKGRSHLMEDSALEWLIAN 590 (660)
Q Consensus 514 aLanLa~~~~~r~~iv~~G~V~~Lv~lL~s~---~~~v~~~Al~aLanLA~~~~~~~aq~~~e~r~~Li~~G~v~~Lv~l 590 (660)
||+|+.. ...++.|..++... ...++..|+.+|..++...++ -+.+.++++
T Consensus 513 aLgN~g~----------~~~i~~l~~~i~~~~~~~~~~R~~Ai~Alr~~~~~~~~----------------~v~~~l~~I 566 (618)
T PF01347_consen 513 ALGNLGH----------PESIPVLLPYIEGKEEVPHFIRVAAIQALRRLAKHCPE----------------KVREILLPI 566 (618)
T ss_dssp HHHHHT-----------GGGHHHHHTTSTTSS-S-HHHHHHHHHTTTTGGGT-HH----------------HHHHHHHHH
T ss_pred HhhccCC----------chhhHHHHhHhhhccccchHHHHHHHHHHHHHhhcCcH----------------HHHHHHHHH
Confidence 9999864 24678888888765 678899999999988766542 244566666
Q ss_pred hcC--CCHHHHHHHHHHHHHhhcCCccHHHHHhcCcHHHHHHHHhcCChHHHHHHHHHH
Q 006114 591 SKT--NSASTRRHVELALCHLAQNEDNARDFISRGGAKELVQISIESSREDIRNLAKKT 647 (660)
Q Consensus 591 L~s--~d~~vr~~Aa~AL~nLa~~~e~~~~Ive~G~l~~Lv~lL~s~s~~~ir~~A~~~ 647 (660)
..+ .++.+|.+|..+|...- | ....+..+...+....+..+.......
T Consensus 567 ~~n~~e~~EvRiaA~~~lm~~~--P-------~~~~l~~i~~~l~~E~~~QV~sfv~S~ 616 (618)
T PF01347_consen 567 FMNTTEDPEVRIAAYLILMRCN--P-------SPSVLQRIAQSLWNEPSNQVASFVYSH 616 (618)
T ss_dssp HH-TTS-HHHHHHHHHHHHHT------------HHHHHHHHHHHTT-S-HHHHHHHHHH
T ss_pred hcCCCCChhHHHHHHHHHHhcC--C-------CHHHHHHHHHHHhhCchHHHHHHHHHh
Confidence 655 35778888877776521 1 112445556666555544444444433
No 308
>PF08581 Tup_N: Tup N-terminal; InterPro: IPR013890 The N-terminal region of the Tup protein has been shown to interact with the Ssn6 transcriptional co-repressor []. ; PDB: 3VP9_B 3VP8_B.
Probab=88.27 E-value=5.1 Score=34.42 Aligned_cols=74 Identities=23% Similarity=0.318 Sum_probs=57.5
Q ss_pred HHHHHhhhhhhhHHHHhhhhHHHHHHHHHhhhhhhhhhhhhHHHHHHHHHHHhhhhhhhhhhhhhhHHHHHHhhHHHHHH
Q 006114 102 DESMRNLVTRSEFLEKENAHLELEVEKILGELNHQKDQNNLKREKIVQLEISLKNSKQQQLDNSSYQKVLADTTQMYEKK 181 (660)
Q Consensus 102 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 181 (660)
.|.+-.+..-|+++..|...+...=+++-..++.|-.....+++++-+||..-... .+.||.|
T Consensus 3 ~elLd~ir~Ef~~~~~e~~~~k~~~~e~e~ki~~Qi~Em~~ir~~v~eLE~~h~km-----------------K~~YEeE 65 (79)
T PF08581_consen 3 NELLDAIRQEFENLSQEANSYKHQKDEYEHKINSQIQEMQQIRQKVYELEQAHRKM-----------------KQQYEEE 65 (79)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----------------HHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----------------HHHHHHH
Confidence 34555667777778888888888788888888888888999999999986655444 4568999
Q ss_pred HHHHHHHHHHH
Q 006114 182 ITELIKQLEIE 192 (660)
Q Consensus 182 ~~~l~~~l~~e 192 (660)
|..|+.+|+..
T Consensus 66 I~rLr~eLe~r 76 (79)
T PF08581_consen 66 IARLRRELEQR 76 (79)
T ss_dssp HHHHHHHHCHH
T ss_pred HHHHHHHHHhh
Confidence 99999998754
No 309
>COG1340 Uncharacterized archaeal coiled-coil protein [Function unknown]
Probab=88.00 E-value=41 Score=35.93 Aligned_cols=212 Identities=18% Similarity=0.195 Sum_probs=0.0
Q ss_pred hhHHHHHHHHHHHhhhhhhhhhhhhhhHHHHHHhhHHHHHHHHHHHHHHHHHHhhhhchHHHHHHHHHHHhhhhhhHHHH
Q 006114 141 NLKREKIVQLEISLKNSKQQQLDNSSYQKVLADTTQMYEKKITELIKQLEIEHARSEGAEEQVDTMKKLISDNQKSIEQY 220 (660)
Q Consensus 141 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~e~~~~~~~~~~~~~l~~~l~~~~~~~~~~ 220 (660)
+....+.++|-.+....+..+.+......-++-..-.++.+..++.-+...-..+++...+++..++....+.-......
T Consensus 9 ~E~e~K~~~lk~~~~e~~ekR~El~~~~~~~~ekRdeln~kvrE~~e~~~elr~~rdeineev~elK~kR~ein~kl~eL 88 (294)
T COG1340 9 DELELKRKQLKEEIEELKEKRDELRKEASELAEKRDELNAKVRELREKAQELREERDEINEEVQELKEKRDEINAKLQEL 88 (294)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_pred hhhhhHHHHHHhhHHHH------------------------------HHHHHHHHhhhhhh------hhhhhhhhHHhHH
Q 006114 221 EMENSTYQKALADTTQL------------------------------YEKKIAELNKKLED------EHACFEGAVEQLD 264 (660)
Q Consensus 221 ~~~~~~~~~~l~~~~~~------------------------------~~~~~~~~~~~~~~------~~~~~~~~~~~~~ 264 (660)
-.+=-.+.+....+... .-++|++|.|+|++ .|+-....-.+.+
T Consensus 89 ~~~~~~l~e~~~~~~~~~~~~~~ler~i~~Le~~~~T~~L~~e~E~~lvq~I~~L~k~le~~~k~~e~~~~~~el~aei~ 168 (294)
T COG1340 89 RKEYRELKEKRNEFNLGGRSIKSLEREIERLEKKQQTSVLTPEEERELVQKIKELRKELEDAKKALEENEKLKELKAEID 168 (294)
T ss_pred HHHHHHHHHHhhhhhccCCCHHHHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_pred HHHHHhhhhhccccchhHH-HHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHhhhhccHHHHHHHHHHHHHHHHhhhhH
Q 006114 265 MVKKLLSDYQNSNQGQKEV-HELCVKLKETRQLHESAVYEVQTLKSEYKNLLEEKETMSDELQAARQRLLVEEKQRKAIE 343 (660)
Q Consensus 265 ~~~~~~~~~~~~~~~~~e~-~~Lk~~Le~e~~~~e~~e~E~~~lks~l~~l~~~~~~~~eel~~~~k~l~~e~~~rkkLe 343 (660)
.+++-.+++-.-++.-.+- .++...+-...+.....-.+...++..+.++........+++..+...+.+--..-+.+.
T Consensus 169 ~lk~~~~e~~eki~~la~eaqe~he~m~k~~~~~De~Rkeade~he~~ve~~~~~~e~~ee~~~~~~elre~~k~ik~l~ 248 (294)
T COG1340 169 ELKKKAREIHEKIQELANEAQEYHEEMIKLFEEADELRKEADELHEEFVELSKKIDELHEEFRNLQNELRELEKKIKALR 248 (294)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_pred HHHHHHHhh
Q 006114 344 YELVKLKKT 352 (660)
Q Consensus 344 ~E~~~l~~~ 352 (660)
......+..
T Consensus 249 ~~~~~~~~~ 257 (294)
T COG1340 249 AKEKAAKRR 257 (294)
T ss_pred HHHHHHHHH
No 310
>COG5209 RCD1 Uncharacterized protein involved in cell differentiation/sexual development [General function prediction only]
Probab=87.90 E-value=6.6 Score=40.28 Aligned_cols=146 Identities=10% Similarity=0.026 Sum_probs=93.4
Q ss_pred HHHHHHHHHHHhhcCchhHHHHHhcCc----cHHHHHhhcCCCCHHHHHHHHHHHHHHh--cChhHHHHHHhccHHHHHH
Q 006114 465 ILRVASGAIANLAMNEMNQGLIMSRGG----GQLLAKTASKTDDPQTLRMVAGALANLC--GNEKLHTMLEEDGAIKALL 538 (660)
Q Consensus 465 v~~~Aa~AL~nLA~~~~n~~~Ive~g~----I~~Ll~LL~~s~d~~v~~~Aa~aLanLa--~~~~~r~~iv~~G~V~~Lv 538 (660)
-...|...|--++.+|+.+..++++.+ .|.|...-+++...-.+..+.|+|+.|. .++.....+....+||.++
T Consensus 116 RvcnaL~lLQclaShPetk~~Fl~AhiplflypfLntss~~~~fEyLRltsLGVIgaLvkNdsq~vi~fLltTeivPLcL 195 (315)
T COG5209 116 RVCNALNLLQCLASHPETKKVFLDAHIPLFLYPFLNTSSSNSKFEYLRLTSLGVIGALVKNDSQYVIKFLLTTEIVPLCL 195 (315)
T ss_pred HHHHHHHHHHHHhcCcchheeeeecccceeeHhhhhccccCCccceeeehHHHHHHHHHhCCCHHHHHHHHhhhHHHHHH
Confidence 345567777788899999999998754 2333333233344456778889999998 5677888889999999999
Q ss_pred HHhcCCCHHHHHHHHHHHHHhhccchhhhhhcchhhhHHHhh----cChHHHHH-HhhcCCCHHHHHHHHHHHHHhhcCC
Q 006114 539 AMVRSGNIDVIAQVARGLANFAKCESRAIVQGQRKGRSHLME----DSALEWLI-ANSKTNSASTRRHVELALCHLAQNE 613 (660)
Q Consensus 539 ~lL~s~~~~v~~~Al~aLanLA~~~~~~~aq~~~e~r~~Li~----~G~v~~Lv-~lL~s~d~~vr~~Aa~AL~nLa~~~ 613 (660)
.++..++.-.+..|+.+++-|-.++. .. .-....+-. ..++..++ .+....+..+.++|..+-..||..+
T Consensus 196 rIme~gSElSktvaifI~qkil~dDv-GL----qYiCqT~eRFyAv~~vln~mv~qlVs~~~~RLlKh~iRcYlRLsd~p 270 (315)
T COG5209 196 RIMELGSELSKTVAIFIFQKILGDDV-GL----QYICQTFERFYAVNLVLNSMVSQLVSLGSTRLLKHAIRCYLRLSDKP 270 (315)
T ss_pred HHHHhhhHHHHHHHHHHHHHHhccch-hH----HHHHHHHHHHHHHHHHHHHHHHHHhhccchhHHHHHHHHheeecCCH
Confidence 99998888888888888887764332 10 001111111 12222222 2234456667777777766666655
Q ss_pred cc
Q 006114 614 DN 615 (660)
Q Consensus 614 e~ 615 (660)
..
T Consensus 271 ~a 272 (315)
T COG5209 271 HA 272 (315)
T ss_pred hH
Confidence 43
No 311
>KOG1820 consensus Microtubule-associated protein [Cytoskeleton]
Probab=87.84 E-value=10 Score=46.00 Aligned_cols=186 Identities=12% Similarity=0.053 Sum_probs=116.5
Q ss_pred HHHHHHhhCCCCHHHHHHHHHHHHHhhCCchhHHHHHHcCC-HHHHHHHHccCCCHHHHHHHHHHHHHhhcC-chhHHHH
Q 006114 409 LPKILQLLTSEDPDVQIHAVKVVANLAAEDINQEKIVEEGG-LDALLLLLRTSQNTTILRVASGAIANLAMN-EMNQGLI 486 (660)
Q Consensus 409 I~~LV~LL~s~d~~vr~~Aa~aL~nLa~~~en~~~Ive~Gg-I~~Lv~LL~~s~d~~v~~~Aa~AL~nLA~~-~~n~~~I 486 (660)
.+.+-.-+.+.+..-|..|+..+..+..++. ....-...+ +-.++.....+.+..+...|+.+|..||.. ... ..=
T Consensus 255 ~~~l~t~~~s~~WK~R~Eale~l~~~l~e~~-~~~~~~~~~ll~~~~ki~~kDaN~~v~~~aa~~l~~ia~~lr~~-~~~ 332 (815)
T KOG1820|consen 255 TKNLETEMLSKKWKDRKEALEELVAILEEAK-KEIVKGYTGLLGILLKIRLKDANINVVMLAAQILELIAKKLRPL-FRK 332 (815)
T ss_pred ChHHHHhhhccchHHHHHHHHHHHHHHhccc-cccccCcchHHHHHHHHhccCcchhHHHHHHHHHHHHHHhcchh-hHH
Confidence 3444455567888888888888877776554 222222222 444455555467778888899999988865 222 122
Q ss_pred HhcCccHHHHHhhcCCCCHHHHHHHHHHHHHHhcChhHHHHHHhccHHHHHHHHhcCCCHHHHHHHHHHHHHhhccchhh
Q 006114 487 MSRGGGQLLAKTASKTDDPQTLRMVAGALANLCGNEKLHTMLEEDGAIKALLAMVRSGNIDVIAQVARGLANFAKCESRA 566 (660)
Q Consensus 487 ve~g~I~~Ll~LL~~s~d~~v~~~Aa~aLanLa~~~~~r~~iv~~G~V~~Lv~lL~s~~~~v~~~Al~aLanLA~~~~~~ 566 (660)
...+++|.++..+.+ ..+.++..+..++-.++. .-.-....+.+..++++.+|.+...+...+.........
T Consensus 333 ~~~~v~p~lld~lke-kk~~l~d~l~~~~d~~~n------s~~l~~~~~~I~e~lk~knp~~k~~~~~~l~r~~~~~~~- 404 (815)
T KOG1820|consen 333 YAKNVFPSLLDRLKE-KKSELRDALLKALDAILN------STPLSKMSEAILEALKGKNPQIKGECLLLLDRKLRKLGP- 404 (815)
T ss_pred HHHhhcchHHHHhhh-ccHHHHHHHHHHHHHHHh------cccHHHHHHHHHHHhcCCChhhHHHHHHHHHHHHhhcCC-
Confidence 224567778877765 344555544444433332 111123567788889999999999988777665432210
Q ss_pred hhhcchhhhHHHhhcChHHHHHHhhcCCCHHHHHHHHHHHHHhh
Q 006114 567 IVQGQRKGRSHLMEDSALEWLIANSKTNSASTRRHVELALCHLA 610 (660)
Q Consensus 567 ~aq~~~e~r~~Li~~G~v~~Lv~lL~s~d~~vr~~Aa~AL~nLa 610 (660)
..-..-.-.+.+|.++...++.+..||.+|..++.-+-
T Consensus 405 ------~~~~~~t~~~l~p~~~~~~~D~~~~VR~Aa~e~~~~v~ 442 (815)
T KOG1820|consen 405 ------KTVEKETVKTLVPHLIKHINDTDKDVRKAALEAVAAVM 442 (815)
T ss_pred ------cCcchhhHHHHhHHHhhhccCCcHHHHHHHHHHHHHHH
Confidence 00111223678899999999999999999999987653
No 312
>PF07926 TPR_MLP1_2: TPR/MLP1/MLP2-like protein; InterPro: IPR012929 This domain is found in a number of proteins, including TPR protein (P12270 from SWISSPROT) and yeast myosin-like proteins 1 (MLP1, Q02455 from SWISSPROT) and 2 (MLP2, P40457 from SWISSPROT). These proteins share a number of features; for example, they all have coiled-coil regions and all three are associated with nuclear pores [, , ]. TPR is thought to be a component of nuclear pore complex- attached intranuclear filaments [], and is implicated in nuclear protein import []. Moreover, its N-terminal region is involved in the activation of oncogenic kinases, possibly by mediating the dimerisation of kinase domains or by targeting these kinases to the nuclear pore complex []. MLP1 and MLP2 are involved in the process of telomere length regulation, where they are thought to interact with proteins such as Tel1p and modulate their activity []. ; GO: 0006606 protein import into nucleus, 0005643 nuclear pore
Probab=87.51 E-value=25 Score=32.92 Aligned_cols=22 Identities=14% Similarity=0.287 Sum_probs=13.1
Q ss_pred HhhhhHHHHHHHHHhhhhhhhh
Q 006114 117 KENAHLELEVEKILGELNHQKD 138 (660)
Q Consensus 117 ~~~~~~~~~~~~~~~~~~~~~~ 138 (660)
.+...|..+++++......-..
T Consensus 3 ~e~~~l~~e~~~~~~~~~~~~~ 24 (132)
T PF07926_consen 3 SELSSLQSELQRLKEQEEDAEE 24 (132)
T ss_pred hHHHHHHHHHHHHHHHHHHHHH
Confidence 4566666666666665544443
No 313
>PF05010 TACC: Transforming acidic coiled-coil-containing protein (TACC); InterPro: IPR007707 This family contains the proteins TACC 1, 2 and 3, found concentrated in the centrosomes of eukaryotes which may play a conserved role in organising centrosomal microtubules. The human TACC proteins have been linked to cancer and TACC2 has been identified as a possible tumour suppressor (AZU-1) [].
Probab=87.49 E-value=35 Score=34.66 Aligned_cols=106 Identities=19% Similarity=0.280 Sum_probs=48.7
Q ss_pred hhchHHHHHHHHHHHhhhhhhHHHHhhhhhHH---HHHHhhHHHHHHHHHHHHhhhhhhhhhhhhhhHHhHHHHHHHhhh
Q 006114 196 SEGAEEQVDTMKKLISDNQKSIEQYEMENSTY---QKALADTTQLYEKKIAELNKKLEDEHACFEGAVEQLDMVKKLLSD 272 (660)
Q Consensus 196 ~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~---~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 272 (660)
++.+-..++.++.+.+|+-+........=..| ..+|-...+.|...+.....+.+ |=...|+++|+.++
T Consensus 78 rdq~~~dL~s~E~sfsdl~~ryek~K~vi~~~k~NEE~Lkk~~~ey~~~l~~~eqry~---aLK~hAeekL~~AN----- 149 (207)
T PF05010_consen 78 RDQAYADLNSLEKSFSDLHKRYEKQKEVIEGYKKNEETLKKCIEEYEERLKKEEQRYQ---ALKAHAEEKLEKAN----- 149 (207)
T ss_pred HHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHH-----
Confidence 34455666677777777665443332222222 22334444444444444433332 11122344444333
Q ss_pred hhccccchhHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHhhhhccHHHHH
Q 006114 273 YQNSNQGQKEVHELCVKLKETRQLHESAVYEVQTLKSEYKNLLEEKETMSDELQA 327 (660)
Q Consensus 273 ~~~~~~~~~e~~~Lk~~Le~e~~~~e~~e~E~~~lks~l~~l~~~~~~~~eel~~ 327 (660)
+.-.+.+.+...|+..|+..++...-...++++.+.+
T Consensus 150 ------------------eei~~v~~~~~~e~~aLqa~lkk~e~~~~SLe~~LeQ 186 (207)
T PF05010_consen 150 ------------------EEIAQVRSKHQAELLALQASLKKEEMKVQSLEESLEQ 186 (207)
T ss_pred ------------------HHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3333445555566666666666554444444443333
No 314
>PF12718 Tropomyosin_1: Tropomyosin like; InterPro: IPR000533 Tropomyosins [], are a family of closely related proteins present in muscle and non-muscle cells. In striated muscle, tropomyosin mediate the interactions between the troponin complex and actin so as to regulate muscle contraction []. The role of tropomyosin in smooth muscle and non-muscle tissues is not clear. Tropomyosin is an alpha-helical protein that forms a coiled-coil structure of 2 parallel helices containing 2 sets of 7 alternating actin binding sites []. There are multiple cell-specific isoforms, created by differential splicing of the messenger RNA from one gene, but the proportions of the isoforms vary between different cell types. Muscle isoforms of tropomyosin are characterised by having 284 amino acid residues and a highly conserved N-terminal region, whereas non-muscle forms are generally smaller and are heterogeneous in their N-terminal region. This entry represents tropomyosin (Tmp) 1, 2 and 3. Within the yeast Tmp1 and Tmp2, biochemical and sequence analyses indicate that Tpm2 spans four actin monomers along a filament, whereas Tpm1 spans five. Despite its shorter length, Tpm2 can compete with Tpm1 for binding to F-actin. Over-expression of Tpm2 in vivo alters the axial budding of haploids to a bipolar pattern, and this can be partially suppressed by co-over-expression of Tpm1. This suggests distinct functions for the two tropomyosins, and indicates that the ratio between them is important for correct morphogenesis [].
Probab=87.48 E-value=27 Score=33.31 Aligned_cols=20 Identities=30% Similarity=0.491 Sum_probs=12.8
Q ss_pred HhhHHHHHHHHHHHHhhhhh
Q 006114 231 LADTTQLYEKKIAELNKKLE 250 (660)
Q Consensus 231 l~~~~~~~~~~~~~~~~~~~ 250 (660)
|-..+..||+|+.+|..++.
T Consensus 120 le~~~~~~E~k~eel~~k~~ 139 (143)
T PF12718_consen 120 LEQERDQWEEKYEELEEKYK 139 (143)
T ss_pred HHhhHHHHHHHHHHHHHHHH
Confidence 33445567777777777665
No 315
>KOG1991 consensus Nuclear transport receptor RANBP7/RANBP8 (importin beta superfamily) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=87.37 E-value=12 Score=45.41 Aligned_cols=147 Identities=14% Similarity=0.093 Sum_probs=88.0
Q ss_pred CCHHHHHHhhC------CC--CHHHHHHHHHHHHHhhC----CchhHHHHHHcCCHHHHHHHHccCCCHHHHHHHHHHHH
Q 006114 407 VGLPKILQLLT------SE--DPDVQIHAVKVVANLAA----EDINQEKIVEEGGLDALLLLLRTSQNTTILRVASGAIA 474 (660)
Q Consensus 407 ggI~~LV~LL~------s~--d~~vr~~Aa~aL~nLa~----~~en~~~Ive~GgI~~Lv~LL~~s~d~~v~~~Aa~AL~ 474 (660)
|.++.++..|. .+ ++.-...|..++++|+. ....+ -.++.=.++.++..++ ++-.-++..||+.+.
T Consensus 410 k~l~F~~~Il~~~~~~~~~~~~~rqkdGAL~~vgsl~~~L~K~s~~~-~~mE~flv~hVfP~f~-s~~g~Lrarac~vl~ 487 (1010)
T KOG1991|consen 410 KILSFIVDILTRYKEASPPNKNPRQKDGALRMVGSLASILLKKSPYK-SQMEYFLVNHVFPEFQ-SPYGYLRARACWVLS 487 (1010)
T ss_pred hHHHHHHHHHHhhcccCCCccChhhhhhHHHHHHHHHHHHccCCchH-HHHHHHHHHHhhHhhc-CchhHHHHHHHHHHH
Confidence 34556666665 22 34555678888888775 22222 2333334677777776 777889999999999
Q ss_pred HhhcCchhHHHHHhcCccHHHHHhhcCCCCHHHHHHHHHHHHHHhcChhHHHHHHhc---cHHHHHHHHhcCCCHHHHHH
Q 006114 475 NLAMNEMNQGLIMSRGGGQLLAKTASKTDDPQTLRMVAGALANLCGNEKLHTMLEED---GAIKALLAMVRSGNIDVIAQ 551 (660)
Q Consensus 475 nLA~~~~n~~~Ive~g~I~~Ll~LL~~s~d~~v~~~Aa~aLanLa~~~~~r~~iv~~---G~V~~Lv~lL~s~~~~v~~~ 551 (660)
.++.-+- .....-..++....++|.++.+-.|+..|+-||..+..+..-...-+.. +.+..|+.+.+..+.+....
T Consensus 488 ~~~~~df-~d~~~l~~ale~t~~~l~~d~~lPV~VeAalALq~fI~~~~~~~e~~~~hvp~~mq~lL~L~ne~End~Lt~ 566 (1010)
T KOG1991|consen 488 QFSSIDF-KDPNNLSEALELTHNCLLNDNELPVRVEAALALQSFISNQEQADEKVSAHVPPIMQELLKLSNEVENDDLTN 566 (1010)
T ss_pred HHHhccC-CChHHHHHHHHHHHHHhccCCcCchhhHHHHHHHHHHhcchhhhhhHhhhhhHHHHHHHHHHHhcchhHHHH
Confidence 9983211 1111112245566666765567789999999999887555544333333 44455666666655555555
Q ss_pred HHHHH
Q 006114 552 VARGL 556 (660)
Q Consensus 552 Al~aL 556 (660)
++..+
T Consensus 567 vme~i 571 (1010)
T KOG1991|consen 567 VMEKI 571 (1010)
T ss_pred HHHHH
Confidence 44443
No 316
>COG2433 Uncharacterized conserved protein [Function unknown]
Probab=87.35 E-value=5.2 Score=46.14 Aligned_cols=90 Identities=23% Similarity=0.362 Sum_probs=60.0
Q ss_pred hhHHHHHHhhhhhhhHHHHhhhhHHHHHHHHHhhhhhhhhhhhhHHHHHHHHHHHhhhhhhhhhhhhhhHH-HHHHhhHH
Q 006114 99 ISYDESMRNLVTRSEFLEKENAHLELEVEKILGELNHQKDQNNLKREKIVQLEISLKNSKQQQLDNSSYQK-VLADTTQM 177 (660)
Q Consensus 99 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~ 177 (660)
.+|...|..+..+.|-|+.||++|+.++.++..++..=......++.+.. .+ --..+++.
T Consensus 418 ~~~~~~i~~~~~~ve~l~~e~~~L~~~~ee~k~eie~L~~~l~~~~r~~~-------------------~~~~~~rei~~ 478 (652)
T COG2433 418 TVYEKRIKKLEETVERLEEENSELKRELEELKREIEKLESELERFRREVR-------------------DKVRKDREIRA 478 (652)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------------------HHHhhhHHHHH
Confidence 56777888888888888999999988888888766554444444333221 11 22345677
Q ss_pred HHHHHHHHHHHHHHHHhhhhchHHHHHHHH
Q 006114 178 YEKKITELIKQLEIEHARSEGAEEQVDTMK 207 (660)
Q Consensus 178 ~~~~~~~l~~~l~~e~~~~~~~~~~~~~l~ 207 (660)
++.+|..|.+.|+.+....+.++.+++.++
T Consensus 479 ~~~~I~~L~~~L~e~~~~ve~L~~~l~~l~ 508 (652)
T COG2433 479 RDRRIERLEKELEEKKKRVEELERKLAELR 508 (652)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 888888888888888766554444444443
No 317
>PF05918 API5: Apoptosis inhibitory protein 5 (API5); InterPro: IPR008383 This family consists of apoptosis inhibitory protein 5 (API5) sequences from several organisms. Apoptosis or programmed cell death is a physiological form of cell death that occurs in embryonic development and organ formation. It is characterised by biochemical and morphological changes such as DNA fragmentation and cell volume shrinkage. API5 is an anti apoptosis gene located in Homo sapiens chromosome 11, whose expression prevents the programmed cell death that occurs upon the deprivation of growth factors [,].; PDB: 3U0R_A 3V6A_A.
Probab=87.27 E-value=5.5 Score=46.10 Aligned_cols=120 Identities=15% Similarity=0.153 Sum_probs=76.7
Q ss_pred CCHHHHHHHHHHHHHhhcC-chhHHHHHhcCccHHHHHhhcCCCCHHHHHHHHHHHHHHhc-ChhHHHHHHhccHHHHHH
Q 006114 461 QNTTILRVASGAIANLAMN-EMNQGLIMSRGGGQLLAKTASKTDDPQTLRMVAGALANLCG-NEKLHTMLEEDGAIKALL 538 (660)
Q Consensus 461 ~d~~v~~~Aa~AL~nLA~~-~~n~~~Ive~g~I~~Ll~LL~~s~d~~v~~~Aa~aLanLa~-~~~~r~~iv~~G~V~~Lv 538 (660)
.++.++..|+..|.....+ |+.++. +|..++.++.+ .|..|+..|...|-.+|. +++... .++..|+
T Consensus 34 g~~k~K~Laaq~I~kffk~FP~l~~~-----Ai~a~~DLcED-ed~~iR~~aik~lp~~ck~~~~~v~-----kvaDvL~ 102 (556)
T PF05918_consen 34 GSPKEKRLAAQFIPKFFKHFPDLQEE-----AINAQLDLCED-EDVQIRKQAIKGLPQLCKDNPEHVS-----KVADVLV 102 (556)
T ss_dssp S-HHHHHHHHHHHHHHHCC-GGGHHH-----HHHHHHHHHT--SSHHHHHHHHHHGGGG--T--T-HH-----HHHHHHH
T ss_pred CCHHHHHHHHHHHHHHHhhChhhHHH-----HHHHHHHHHhc-ccHHHHHHHHHhHHHHHHhHHHHHh-----HHHHHHH
Confidence 3678899999999998876 886655 57788999975 899999999999999995 455544 3566889
Q ss_pred HHhcCCCHHHHHHHHHHHHHhhccchhhhhhcchhhhHHHhhcChHHHHHHhhc---CCCHHHHHHHHHHHH
Q 006114 539 AMVRSGNIDVIAQVARGLANFAKCESRAIVQGQRKGRSHLMEDSALEWLIANSK---TNSASTRRHVELALC 607 (660)
Q Consensus 539 ~lL~s~~~~v~~~Al~aLanLA~~~~~~~aq~~~e~r~~Li~~G~v~~Lv~lL~---s~d~~vr~~Aa~AL~ 607 (660)
.+|.+.++.-...+-.+|..|-..++. +.+..+...+. +.++.+|..+...|+
T Consensus 103 QlL~tdd~~E~~~v~~sL~~ll~~d~k----------------~tL~~lf~~i~~~~~~de~~Re~~lkFl~ 158 (556)
T PF05918_consen 103 QLLQTDDPVELDAVKNSLMSLLKQDPK----------------GTLTGLFSQIESSKSGDEQVRERALKFLR 158 (556)
T ss_dssp HHTT---HHHHHHHHHHHHHHHHH-HH----------------HHHHHHHHHHH---HS-HHHHHHHHHHHH
T ss_pred HHHhcccHHHHHHHHHHHHHHHhcCcH----------------HHHHHHHHHHHhcccCchHHHHHHHHHHH
Confidence 999988887777777777666554432 22333333332 356667776665554
No 318
>PF14073 Cep57_CLD: Centrosome localisation domain of Cep57
Probab=87.21 E-value=33 Score=33.98 Aligned_cols=88 Identities=22% Similarity=0.263 Sum_probs=52.8
Q ss_pred HHHHhhhhhhhHHHHhhhhHHHHHHHHHhhhhhhhhhhhhHHHHHHHHHHHhhhhhhhhhhhhhhHHHHHHhhHHHHHHH
Q 006114 103 ESMRNLVTRSEFLEKENAHLELEVEKILGELNHQKDQNNLKREKIVQLEISLKNSKQQQLDNSSYQKVLADTTQMYEKKI 182 (660)
Q Consensus 103 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 182 (660)
-++++|..|+-.|+=|.+.-+.-++.|-.+-.+.+.--.. .+. .-....+...+.-
T Consensus 4 sALK~LQeKIrrLELER~qAe~nl~~LS~et~~yk~vl~~----------------------~~~--~~~~~~~e~~~q~ 59 (178)
T PF14073_consen 4 SALKNLQEKIRRLELERSQAEDNLKQLSRETSHYKKVLQS----------------------EQN--ERERAHQELSKQN 59 (178)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHhHHHHHH----------------------Hhh--hhhcccchhhhcc
Confidence 3567888887777777777777776665555443321100 000 0011122222234
Q ss_pred HHHHHHHHHHHhhhhchHHHHHHHHHHHhhhh
Q 006114 183 TELIKQLEIEHARSEGAEEQVDTMKKLISDNQ 214 (660)
Q Consensus 183 ~~l~~~l~~e~~~~~~~~~~~~~l~~~l~~~~ 214 (660)
.++..+|..--++|..+|.+++.|++-+....
T Consensus 60 ~dl~~qL~aAEtRCslLEKQLeyMRkmv~~ae 91 (178)
T PF14073_consen 60 QDLSSQLSAAETRCSLLEKQLEYMRKMVESAE 91 (178)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 57777888888888999999988887766654
No 319
>KOG0980 consensus Actin-binding protein SLA2/Huntingtin-interacting protein Hip1 [Cytoskeleton]
Probab=87.15 E-value=80 Score=38.36 Aligned_cols=16 Identities=25% Similarity=0.329 Sum_probs=8.9
Q ss_pred HHHHHHHHHHhhHHHH
Q 006114 89 EFEKQLRESQISYDES 104 (660)
Q Consensus 89 ~~e~~~~~~~~~~~~~ 104 (660)
+|++++...+..+.+.
T Consensus 362 q~~~ql~~le~~~~e~ 377 (980)
T KOG0980|consen 362 QYENQLLALEGELQEQ 377 (980)
T ss_pred HHHHHHHHHHHHHHHh
Confidence 4555555555555554
No 320
>KOG1003 consensus Actin filament-coating protein tropomyosin [Cytoskeleton]
Probab=87.00 E-value=36 Score=34.17 Aligned_cols=91 Identities=19% Similarity=0.234 Sum_probs=75.1
Q ss_pred HHHHHHHHHHhhhhhhhhhhhhhhHHHHHHhhHHHHHHHHHHHHHHHHHHhhhhchHHHHHHHHHHHhhhhhhHHHHhhh
Q 006114 144 REKIVQLEISLKNSKQQQLDNSSYQKVLADTTQMYEKKITELIKQLEIEHARSEGAEEQVDTMKKLISDNQKSIEQYEME 223 (660)
Q Consensus 144 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~e~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~ 223 (660)
.++...+|+.|+..++--=++...+.-.+....+.|-.+.+.....+-.-+++..+++++.++.+-|..+-.+..++.-.
T Consensus 59 EE~~e~~e~qLkEAk~iaE~adrK~eEVarkL~iiE~dLE~~eeraE~~Es~~~eLeEe~~~~~~nlk~l~~~ee~~~q~ 138 (205)
T KOG1003|consen 59 EEKMEAQEAQLKEAKHIAEKADRKYEEVARKLVIIEGELERAEERAEAAESQSEELEEDLRILDSNLKSLSAKEEKLEQK 138 (205)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHhHhHHHHHHHHHHHHhhh
Confidence 35677889999999998888888888889999999999999999999999999999999999999999998777665555
Q ss_pred hhHHHHHHhhH
Q 006114 224 NSTYQKALADT 234 (660)
Q Consensus 224 ~~~~~~~l~~~ 234 (660)
-..|-..|..|
T Consensus 139 ~d~~e~~ik~l 149 (205)
T KOG1003|consen 139 EEKYEEELKEL 149 (205)
T ss_pred HHHHHHHHHHH
Confidence 55555544433
No 321
>PRK09169 hypothetical protein; Validated
Probab=86.98 E-value=25 Score=46.60 Aligned_cols=150 Identities=23% Similarity=0.216 Sum_probs=85.4
Q ss_pred hCCCHHHHHHhhC-CCC-HHHHHHHHHHHHHhhCCchhHHHHHHcCCHHHHHHHHccCCCHHHHHHHHHHHHHhhcC-ch
Q 006114 405 DEVGLPKILQLLT-SED-PDVQIHAVKVVANLAAEDINQEKIVEEGGLDALLLLLRTSQNTTILRVASGAIANLAMN-EM 481 (660)
Q Consensus 405 e~ggI~~LV~LL~-s~d-~~vr~~Aa~aL~nLa~~~en~~~Ive~GgI~~Lv~LL~~s~d~~v~~~Aa~AL~nLA~~-~~ 481 (660)
+.-.+..++.-|+ .++ ..++..+..+-.-|+..+... .-++..+|..+++.|..-++....+.++..|+.-... +.
T Consensus 161 ~~~~v~~lLNalSKWP~~~~c~~aa~~lA~~la~~~~l~-~al~~q~va~~lnalSKwp~~~~cr~a~~~lA~rL~~~~~ 239 (2316)
T PRK09169 161 DAISFALLLNALSKWPDNTDCQTAAEQLADRLASDSRLL-QAMDAQEVANALNALSKWPDSPRCRNAAERLAERLADEPG 239 (2316)
T ss_pred hhHHHHHHHHHhccCCCchHHHHHHHHHHHHhccCHHHH-HhcchHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHhcChH
Confidence 3445667776665 444 455554444433355555554 3345557888888887777777777777777766544 33
Q ss_pred hHHHHHhcCccHHHHHhhcCCCCHHHHHHHHHHHHH-HhcChhHHHHHHhccHHHHHHHHhcCCCHHHHHHHHHHH
Q 006114 482 NQGLIMSRGGGQLLAKTASKTDDPQTLRMVAGALAN-LCGNEKLHTMLEEDGAIKALLAMVRSGNIDVIAQVARGL 556 (660)
Q Consensus 482 n~~~Ive~g~I~~Ll~LL~~s~d~~v~~~Aa~aLan-La~~~~~r~~iv~~G~V~~Lv~lL~s~~~~v~~~Al~aL 556 (660)
... -+..-.|..+++-|+..++.+....++.+|+- |+..+..+..+-..|+...|-.+-+-++...+..++..|
T Consensus 240 l~~-~l~~q~va~~LNAlSKWp~~~~c~~aa~~lA~rla~~~~lr~~~~~Q~vAN~LNALSKwp~~~~cr~aa~~L 314 (2316)
T PRK09169 240 LLQ-SLRAQEVALLLNALSKWPDDEACRQAAEALAARLAREPGLRLALDPQGVANALNALSKWPDTEACRQAAEAL 314 (2316)
T ss_pred HHH-hcCHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHhcChhhhhhcCHHHHHHHHHHHHhCCCchHHHHHHHHH
Confidence 232 23333466677777776666677777766664 456666666544444444444444434444444444444
No 322
>PF09787 Golgin_A5: Golgin subfamily A member 5; InterPro: IPR019177 This entry represents a family of proteins involved in maintaining Golgi structure. They stimulate the formation of Golgi stacks and ribbons, and are involved in intra-Golgi retrograde transport. Two main interactions have been characterised: one with RAB1A that has been activated by GTP-binding and another with isoform CASP of CUTL1 [].
Probab=86.90 E-value=66 Score=37.14 Aligned_cols=86 Identities=20% Similarity=0.257 Sum_probs=54.0
Q ss_pred hhhhhHHHHHHhhHHHHHHHHHHHH-H-------------HHHHHhhhhchHHHHHHHHHHHhhhhhhHHHHhhhhhHHH
Q 006114 163 DNSSYQKVLADTTQMYEKKITELIK-Q-------------LEIEHARSEGAEEQVDTMKKLISDNQKSIEQYEMENSTYQ 228 (660)
Q Consensus 163 ~~~~~~~~~~~~~~~~~~~~~~l~~-~-------------l~~e~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~ 228 (660)
+...|....+...+..|+-|..|+. - |+.=+..+..+.+++..|+.++.++. .+=....
T Consensus 236 el~~Yk~kA~~iLq~kEklI~~LK~~~~~~~~~~~~~~~el~~l~~E~~~~~ee~~~l~~Qi~~l~-------~e~~d~e 308 (511)
T PF09787_consen 236 ELQQYKQKAQRILQSKEKLIESLKEGCLEEGFDSSTNSIELEELKQERDHLQEEIQLLERQIEQLR-------AELQDLE 308 (511)
T ss_pred HHHHHHHHHHHHhcCHHHHHHHHHhcccccccccccchhcchhhHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHH
Confidence 3344444678888888999988888 2 33334456667777777777776555 2223333
Q ss_pred HHHhhHHHHHHHHHHHHhhhhhhhhhh
Q 006114 229 KALADTTQLYEKKIAELNKKLEDEHAC 255 (660)
Q Consensus 229 ~~l~~~~~~~~~~~~~~~~~~~~~~~~ 255 (660)
..+......+++...++..++.-+..+
T Consensus 309 ~~~~~~~~~~~~~~~~~~~~~~~~~~~ 335 (511)
T PF09787_consen 309 AQLEGEQESFREQPQELSQQLEPELTT 335 (511)
T ss_pred HHHHhHHHHHHHHHHHHHHHHHHHhch
Confidence 455556666777777777666555444
No 323
>COG4942 Membrane-bound metallopeptidase [Cell division and chromosome partitioning]
Probab=86.52 E-value=61 Score=36.36 Aligned_cols=46 Identities=15% Similarity=0.220 Sum_probs=20.9
Q ss_pred HHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHhhhhccHHHHHH
Q 006114 283 VHELCVKLKETRQLHESAVYEVQTLKSEYKNLLEEKETMSDELQAA 328 (660)
Q Consensus 283 ~~~Lk~~Le~e~~~~e~~e~E~~~lks~l~~l~~~~~~~~eel~~~ 328 (660)
..+|...++.-.+....++.++..-+..+..|......+..+|-+.
T Consensus 198 ~~kl~~~~~E~kk~~~~l~~~l~~~q~~l~eL~~~~~~L~~~Ias~ 243 (420)
T COG4942 198 QAKLAQLLEERKKTLAQLNSELSADQKKLEELRANESRLKNEIASA 243 (420)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHH
Confidence 3444444444444444444444444445555444444444444333
No 324
>PF15066 CAGE1: Cancer-associated gene protein 1 family
Probab=86.49 E-value=62 Score=36.48 Aligned_cols=82 Identities=22% Similarity=0.333 Sum_probs=45.9
Q ss_pred hHHHHHHhhHHHHHHHHHHHHHHHHHHhhhhchHHHHHHHHHHHhhhhhhHHHHhhhhhHHHHHHhhHHHHH----HHHH
Q 006114 167 YQKVLADTTQMYEKKITELIKQLEIEHARSEGAEEQVDTMKKLISDNQKSIEQYEMENSTYQKALADTTQLY----EKKI 242 (660)
Q Consensus 167 ~~~~~~~~~~~~~~~~~~l~~~l~~e~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~l~~~~~~~----~~~~ 242 (660)
++.++-|-|-.+...|.+|+-.==.-.-...-++.-+..|...|.+.||-.+.-..++-++|=.|-.++--| |+-+
T Consensus 356 kQqvfvDiinkLk~niEeLIedKY~viLEKnd~~k~lqnLqe~la~tqk~LqEsr~eKetLqlelkK~k~nyv~LQEry~ 435 (527)
T PF15066_consen 356 KQQVFVDIINKLKENIEELIEDKYRVILEKNDIEKTLQNLQEALANTQKHLQESRNEKETLQLELKKIKANYVHLQERYM 435 (527)
T ss_pred hhhHHHHHHHHHHHHHHHHHHhHhHhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHhhhHHHHHHHHH
Confidence 334445555566666666655443334444455555666666666666666666666666665555444333 5555
Q ss_pred HHHhhh
Q 006114 243 AELNKK 248 (660)
Q Consensus 243 ~~~~~~ 248 (660)
+|++.+
T Consensus 436 ~eiQqK 441 (527)
T PF15066_consen 436 TEIQQK 441 (527)
T ss_pred HHHHHh
Confidence 665554
No 325
>COG5209 RCD1 Uncharacterized protein involved in cell differentiation/sexual development [General function prediction only]
Probab=86.43 E-value=8 Score=39.69 Aligned_cols=136 Identities=13% Similarity=0.130 Sum_probs=86.6
Q ss_pred HHHHHHHHHhhCCchhHHHHHHcCCHHHHHHHHcc----CCCHHHHHHHHHHHHHhhcC--chhHHHHHhcCccHHHHHh
Q 006114 425 IHAVKVVANLAAEDINQEKIVEEGGLDALLLLLRT----SQNTTILRVASGAIANLAMN--EMNQGLIMSRGGGQLLAKT 498 (660)
Q Consensus 425 ~~Aa~aL~nLa~~~en~~~Ive~GgI~~Lv~LL~~----s~d~~v~~~Aa~AL~nLA~~--~~n~~~Ive~g~I~~Ll~L 498 (660)
..|+.+|.-++.+|+.+..++++..--.|...|.. ++-..++..+.++|+.|..+ +.....+....+||.++++
T Consensus 118 cnaL~lLQclaShPetk~~Fl~AhiplflypfLntss~~~~fEyLRltsLGVIgaLvkNdsq~vi~fLltTeivPLcLrI 197 (315)
T COG5209 118 CNALNLLQCLASHPETKKVFLDAHIPLFLYPFLNTSSSNSKFEYLRLTSLGVIGALVKNDSQYVIKFLLTTEIVPLCLRI 197 (315)
T ss_pred HHHHHHHHHHhcCcchheeeeecccceeeHhhhhccccCCccceeeehHHHHHHHHHhCCCHHHHHHHHhhhHHHHHHHH
Confidence 34555566677799999999887542223334432 33456888899999999887 4556667778999999999
Q ss_pred hcCCCCHHHHHHHHHHHHHHhcChhHHHHHHhc----cHHHH----HH-HHhcCCCHHHHHHHHHHHHHhhc
Q 006114 499 ASKTDDPQTLRMVAGALANLCGNEKLHTMLEED----GAIKA----LL-AMVRSGNIDVIAQVARGLANFAK 561 (660)
Q Consensus 499 L~~s~d~~v~~~Aa~aLanLa~~~~~r~~iv~~----G~V~~----Lv-~lL~s~~~~v~~~Al~aLanLA~ 561 (660)
+.. ++.-.+-.|+..+..+..++.+-+.++.. -+|.. ++ .++..+.......++++--.++.
T Consensus 198 me~-gSElSktvaifI~qkil~dDvGLqYiCqT~eRFyAv~~vln~mv~qlVs~~~~RLlKh~iRcYlRLsd 268 (315)
T COG5209 198 MEL-GSELSKTVAIFIFQKILGDDVGLQYICQTFERFYAVNLVLNSMVSQLVSLGSTRLLKHAIRCYLRLSD 268 (315)
T ss_pred HHh-hhHHHHHHHHHHHHHHhccchhHHHHHHHHHHHHHHHHHHHHHHHHHhhccchhHHHHHHHHheeecC
Confidence 864 44444444555555555666665555532 22222 22 22345666777778877777764
No 326
>KOG4653 consensus Uncharacterized conserved protein [Function unknown]
Probab=86.12 E-value=8.1 Score=46.31 Aligned_cols=168 Identities=11% Similarity=0.098 Sum_probs=109.5
Q ss_pred CCCHHHHHHHHHHHHHhhcCchhHHHHHhcCccHHHHHhhcCCCCHHHHHHHHHHHHHHhcChhHHHHHHhccHHHHHHH
Q 006114 460 SQNTTILRVASGAIANLAMNEMNQGLIMSRGGGQLLAKTASKTDDPQTLRMVAGALANLCGNEKLHTMLEEDGAIKALLA 539 (660)
Q Consensus 460 s~d~~v~~~Aa~AL~nLA~~~~n~~~Ive~g~I~~Ll~LL~~s~d~~v~~~Aa~aLanLa~~~~~r~~iv~~G~V~~Lv~ 539 (660)
++-+.++..+...|+.+.........+...+++...+..|.+ .|+-|--+|..++..||.- .....+|.+.+
T Consensus 738 d~qvpik~~gL~~l~~l~e~r~~~~~~~~ekvl~i~ld~Lkd-edsyvyLnaI~gv~~Lcev-------y~e~il~dL~e 809 (982)
T KOG4653|consen 738 DDQVPIKGYGLQMLRHLIEKRKKATLIQGEKVLAIALDTLKD-EDSYVYLNAIRGVVSLCEV-------YPEDILPDLSE 809 (982)
T ss_pred CCcccchHHHHHHHHHHHHhcchhhhhhHHHHHHHHHHHhcc-cCceeeHHHHHHHHHHHHh-------cchhhHHHHHH
Confidence 455678889999999998877777888889999999999986 8889999999988888831 33456777777
Q ss_pred -HhcCC---CHHHHHHHHHHHHHhhccchhhhhhcchhhhHHHhh--cChHHHHHHhhcCCCHHHHHHHHHHHHHhhcCC
Q 006114 540 -MVRSG---NIDVIAQVARGLANFAKCESRAIVQGQRKGRSHLME--DSALEWLIANSKTNSASTRRHVELALCHLAQNE 613 (660)
Q Consensus 540 -lL~s~---~~~v~~~Al~aLanLA~~~~~~~aq~~~e~r~~Li~--~G~v~~Lv~lL~s~d~~vr~~Aa~AL~nLa~~~ 613 (660)
+.... .++.+..+-.+|.+++..-. ..... +-.+..++..+.+++...|.-++.+|++||.-.
T Consensus 810 ~Y~s~k~k~~~d~~lkVGEai~k~~qa~G-----------el~~~y~~~Li~tfl~gvrepd~~~RaSS~a~lg~Lcq~~ 878 (982)
T KOG4653|consen 810 EYLSEKKKLQTDYRLKVGEAILKVAQALG-----------ELVFKYKAVLINTFLSGVREPDHEFRASSLANLGQLCQLL 878 (982)
T ss_pred HHHhcccCCCccceehHHHHHHHHHHHhc-----------cHHHHHHHHHHHHHHHhcCCchHHHHHhHHHHHHHHHHHH
Confidence 33321 23444455566665552110 11111 123445556666667777888999999998733
Q ss_pred --ccHHHHHhcCcHHHHHHHHhcCChHHHHHHHHHHH
Q 006114 614 --DNARDFISRGGAKELVQISIESSREDIRNLAKKTM 648 (660)
Q Consensus 614 --e~~~~Ive~G~l~~Lv~lL~s~s~~~ir~~A~~~L 648 (660)
.....+.+ ++..++.+..-+.....|.+|..++
T Consensus 879 a~~vsd~~~e--v~~~Il~l~~~d~s~~vRRaAv~li 913 (982)
T KOG4653|consen 879 AFQVSDFFHE--VLQLILSLETTDGSVLVRRAAVHLL 913 (982)
T ss_pred hhhhhHHHHH--HHHHHHHHHccCCchhhHHHHHHHH
Confidence 22233333 5566666666555555666665444
No 327
>PF08614 ATG16: Autophagy protein 16 (ATG16); InterPro: IPR013923 Macroautophagy is a bulk degradation process induced by starvation in eukaryotic cells. In yeast, 15 Apg proteins coordinate the formation of autophagosomes. No molecule involved in autophagy has yet been identified in higher eukaryotes []. The pre-autophagosomal structure contains at least five Apg proteins: Apg1p, Apg2p, Apg5p, Aut7p/Apg8p and Apg16p. It is found in the vacuole []. The C-terminal glycine of Apg12p is conjugated to a lysine residue of Apg5p via an isopeptide bond. During autophagy, cytoplasmic components are enclosed in autophagosomes and delivered to lysosomes/vacuoles. Auotphagy protein 16 (Apg16) has been shown to be bind to Apg5 and is required for the function of the Apg12p-Apg5p conjugate []. Autophagy protein 5 (Apg5) is directly required for the import of aminopeptidase I via the cytoplasm-to-vacuole targeting pathway []. This entry represents auotphagy protein 16 (Apg16), which is required for the function of the Apg12p-Apg5p conjugate.; PDB: 3A7O_D 3A7P_B.
Probab=86.09 E-value=4 Score=40.75 Aligned_cols=115 Identities=20% Similarity=0.243 Sum_probs=13.2
Q ss_pred HHHHHHhhhhhhhHHHHhhhhHHHHHHHHHhhh--------hhhhhhhhhHHHHHHHHHHHhhhhhhhhhhhhhhHHHHH
Q 006114 101 YDESMRNLVTRSEFLEKENAHLELEVEKILGEL--------NHQKDQNNLKREKIVQLEISLKNSKQQQLDNSSYQKVLA 172 (660)
Q Consensus 101 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 172 (660)
|-++-..|-.+...|..++..|..+-...-..- .-..+....+..++..+..+|-+....+-++..+...+-
T Consensus 22 li~ay~~L~d~~~~l~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~le~~~~~l~~ELael~r~~~el~~~L~~~~ 101 (194)
T PF08614_consen 22 LIDAYNRLADRTSLLKAENEQLQPEAESLPSSSSSSPSESGSVSSAQISSLEQKLAKLQEELAELYRSKGELAQQLVELN 101 (194)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred cccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccc
Confidence 333445666777777777777666433332211 111112233445555566666666666666655555555
Q ss_pred HhhHHHHHHHHHHHHHHHHHHhhhhchHHHHHHHHHHHhhhhh
Q 006114 173 DTTQMYEKKITELIKQLEIEHARSEGAEEQVDTMKKLISDNQK 215 (660)
Q Consensus 173 ~~~~~~~~~~~~l~~~l~~e~~~~~~~~~~~~~l~~~l~~~~~ 215 (660)
.+.+.++.++.+....+..-......++.++..++..+.+..+
T Consensus 102 ~~l~~l~~~~~~~~~~l~~l~~~~~~L~~~~~~l~~~l~ek~k 144 (194)
T PF08614_consen 102 DELQELEKELSEKERRLAELEAELAQLEEKIKDLEEELKEKNK 144 (194)
T ss_dssp ------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cccchhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5555555555444444444444444444444444444443333
No 328
>PF01347 Vitellogenin_N: Lipoprotein amino terminal region; InterPro: IPR001747 This entry represents a conserved region found in several lipid transport proteins, including vitellogenin, microsomal triglyceride transfer protein and apolipoprotein B-100 []. Vitellinogen precursors provide the major egg yolk proteins that are a source of nutrients during early development of oviparous vertebrates and invertebrates. Vitellinogen precursors are multi-domain apolipoproteins that are cleaved into distinct yolk proteins. Different vitellinogen precursors exist, which are composed of variable combinations of yolk protein components; however, the cleavage sites are conserved. In vertebrates, a complete vitellinogen is composed of an N-terminal signal peptide for export, followed by four regions that can be cleaved into yolk proteins: lipovitellin-1, phosvitin, lipovitellin-2, and a von Willebrand factor type D domain (YGP40) [, ]. Microsomal triglyceride transfer protein (MTTP) is an endoplasmic reticulum lipid transfer protein involved in the biosynthesis and lipid loading of apolipoprotein B. MTTP is also involved in the late stage of CD1d trafficking in the lysosomal compartment, CD1d being the MHC I-like lipid antigen presenting molecule []. Apolipoprotein B can exist in two forms: B-100 and B-48. Apoliporotein B-100 is present on several lipoproteins, including very low-density lipoproteins (VLDL), intermediate density lipoproteins (IDL) and low density lipoproteins (LDL), and can assemble VLDL particles in the liver []. Apolipoprotein B-100 has been linked to the development of atherosclerosis.; GO: 0005319 lipid transporter activity, 0006869 lipid transport; PDB: 1LSH_A.
Probab=86.01 E-value=14 Score=43.31 Aligned_cols=173 Identities=16% Similarity=0.120 Sum_probs=91.9
Q ss_pred CHHHHHHHHccCCCHHHHHHHHHHHHHhhcCc-hhHHHHHhcCccHHHHHhhcC---CCCHHHHHHHHHHHHHHh----c
Q 006114 449 GLDALLLLLRTSQNTTILRVASGAIANLAMNE-MNQGLIMSRGGGQLLAKTASK---TDDPQTLRMVAGALANLC----G 520 (660)
Q Consensus 449 gI~~Lv~LL~~s~d~~v~~~Aa~AL~nLA~~~-~n~~~Ive~g~I~~Ll~LL~~---s~d~~v~~~Aa~aLanLa----~ 520 (660)
++..+..++....-.. ..|+.+|..|.... ..- ...+..+..++.. ..++.+...|+-+++.|. .
T Consensus 396 av~~i~~~I~~~~~~~--~ea~~~l~~l~~~~~~Pt-----~e~l~~l~~L~~~~~~~~~~~l~~ta~L~~~~lv~~~c~ 468 (618)
T PF01347_consen 396 AVKFIKDLIKSKKLTD--DEAAQLLASLPFHVRRPT-----EELLKELFELAKSPKVKNSPYLRETALLSLGSLVHKYCV 468 (618)
T ss_dssp HHHHHHHHHHTT-S-H--HHHHHHHHHHHHT----------HHHHHHHHHHHT-HHHHT-HHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHcCCCCH--HHHHHHHHHHHhhcCCCC-----HHHHHHHHHHHhCccccCChhHHHHHHHHHHHHhCceee
Confidence 4666777776432222 23555566554431 111 1133444444432 134566666665666554 2
Q ss_pred Ch------hHHHHHHhccHHHHHHHHhc----CCCHHHHHHHHHHHHHhhccchhhhhhcchhhhHHHhhcChHHHHHHh
Q 006114 521 NE------KLHTMLEEDGAIKALLAMVR----SGNIDVIAQVARGLANFAKCESRAIVQGQRKGRSHLMEDSALEWLIAN 590 (660)
Q Consensus 521 ~~------~~r~~iv~~G~V~~Lv~lL~----s~~~~v~~~Al~aLanLA~~~~~~~aq~~~e~r~~Li~~G~v~~Lv~l 590 (660)
.. ......+-...++.+...+. ..+..-...++.+|+|+... ..++.|.++
T Consensus 469 ~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~LkaLgN~g~~-------------------~~i~~l~~~ 529 (618)
T PF01347_consen 469 NSDSAEFCDPCSRCIIEKYVPYLEQELKEAVSRGDEEEKIVYLKALGNLGHP-------------------ESIPVLLPY 529 (618)
T ss_dssp T-----------SS--GGGTHHHHHHHHHHHHTT-HHHHHHHHHHHHHHT-G-------------------GGHHHHHTT
T ss_pred cccccccccccchhhHHHHHHHHHHHHHHHhhccCHHHHHHHHHHhhccCCc-------------------hhhHHHHhH
Confidence 21 11122223345555555554 56778888999999998732 367788888
Q ss_pred hcCC---CHHHHHHHHHHHHHhhcCCccHHHHHhcCcHHHHHHHHhcCC-hHHHHHHHHHHH-hcCcch
Q 006114 591 SKTN---SASTRRHVELALCHLAQNEDNARDFISRGGAKELVQISIESS-REDIRNLAKKTM-KSNPRL 654 (660)
Q Consensus 591 L~s~---d~~vr~~Aa~AL~nLa~~~e~~~~Ive~G~l~~Lv~lL~s~s-~~~ir~~A~~~L-~~~p~~ 654 (660)
+... +..+|..|++||..++..... -+.+.|..+..... +..+|-+|.-+| .++|+.
T Consensus 530 i~~~~~~~~~~R~~Ai~Alr~~~~~~~~-------~v~~~l~~I~~n~~e~~EvRiaA~~~lm~~~P~~ 591 (618)
T PF01347_consen 530 IEGKEEVPHFIRVAAIQALRRLAKHCPE-------KVREILLPIFMNTTEDPEVRIAAYLILMRCNPSP 591 (618)
T ss_dssp STTSS-S-HHHHHHHHHTTTTGGGT-HH-------HHHHHHHHHHH-TTS-HHHHHHHHHHHHHT---H
T ss_pred hhhccccchHHHHHHHHHHHHHhhcCcH-------HHHHHHHHHhcCCCCChhHHHHHHHHHHhcCCCH
Confidence 7766 678999999999988554321 13456667776653 345888888555 666875
No 329
>KOG1248 consensus Uncharacterized conserved protein [Function unknown]
Probab=85.79 E-value=35 Score=42.46 Aligned_cols=182 Identities=14% Similarity=0.101 Sum_probs=104.5
Q ss_pred HhhCCCCHHHHHHHHHHHHHhhC-Cc-hhHHHHHHcCCHHHHHHHHccCCCHHHHHHHHHHHHHhhcC----chh---HH
Q 006114 414 QLLTSEDPDVQIHAVKVVANLAA-ED-INQEKIVEEGGLDALLLLLRTSQNTTILRVASGAIANLAMN----EMN---QG 484 (660)
Q Consensus 414 ~LL~s~d~~vr~~Aa~aL~nLa~-~~-en~~~Ive~GgI~~Lv~LL~~s~d~~v~~~Aa~AL~nLA~~----~~n---~~ 484 (660)
.-+++.+..++..++.+|..|.. .+ ++...+... ||-++-.++ ..|...+++|-.+|..|+.. ++. ..
T Consensus 704 ds~qs~~~~~~~~rl~~L~~L~~~~~~e~~~~i~k~--I~EvIL~~K-e~n~~aR~~Af~lL~~i~~i~~~~d~g~e~~~ 780 (1176)
T KOG1248|consen 704 DSFQSSSSPAQASRLKCLKRLLKLLSAEHCDLIPKL--IPEVILSLK-EVNVKARRNAFALLVFIGAIQSSLDDGNEPAS 780 (1176)
T ss_pred HHHhccchHHHHHHHHHHHHHHHhccHHHHHHHHHH--HHHHHHhcc-cccHHHHhhHHHHHHHHHHHHhhhcccccchH
Confidence 44446677788888888888776 33 556666554 676666665 66777888888888887621 111 12
Q ss_pred HHHhcCccHHHHHhhcCCCCHHHHHHHHHHHHHHhcChhHHHHHHhc----cHHHHHHHHhcCCCHHHHHHHHHHHHHhh
Q 006114 485 LIMSRGGGQLLAKTASKTDDPQTLRMVAGALANLCGNEKLHTMLEED----GAIKALLAMVRSGNIDVIAQVARGLANFA 560 (660)
Q Consensus 485 ~Ive~g~I~~Ll~LL~~s~d~~v~~~Aa~aLanLa~~~~~r~~iv~~----G~V~~Lv~lL~s~~~~v~~~Al~aLanLA 560 (660)
.+++. .|+.+...+.. ..+.+.....-++..+.. ....+++. +.+..+..+|.+..+++...|+..|..++
T Consensus 781 ~~lne-fl~~Isagl~g-d~~~~~as~Ivai~~il~---e~~~~ld~~~l~~li~~V~~~L~s~sreI~kaAI~fikvlv 855 (1176)
T KOG1248|consen 781 AILNE-FLSIISAGLVG-DSTRVVASDIVAITHILQ---EFKNILDDETLEKLISMVCLYLASNSREIAKAAIGFIKVLV 855 (1176)
T ss_pred HHHHH-HHHHHHhhhcc-cHHHHHHHHHHHHHHHHH---HHhccccHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHH
Confidence 22222 23333333221 122222111223333321 11122333 34445555667899999999999999988
Q ss_pred ccchhhhhhcchhhhHHHhhcChHHHHHHhhcCCCHHHHHHHHHHHHHhhc
Q 006114 561 KCESRAIVQGQRKGRSHLMEDSALEWLIANSKTNSASTRRHVELALCHLAQ 611 (660)
Q Consensus 561 ~~~~~~~aq~~~e~r~~Li~~G~v~~Lv~lL~s~d~~vr~~Aa~AL~nLa~ 611 (660)
..-|...- .-...-.+|.+..++++....+|..+-..|-.|+.
T Consensus 856 ~~~pe~~l--------~~~~~~LL~sll~ls~d~k~~~r~Kvr~LlekLir 898 (1176)
T KOG1248|consen 856 YKFPEECL--------SPHLEELLPSLLALSHDHKIKVRKKVRLLLEKLIR 898 (1176)
T ss_pred HcCCHHHH--------hhhHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHH
Confidence 66543221 11122367777777777778888887777766654
No 330
>PF14988 DUF4515: Domain of unknown function (DUF4515)
Probab=85.76 E-value=43 Score=33.96 Aligned_cols=113 Identities=21% Similarity=0.294 Sum_probs=60.6
Q ss_pred hHHHHhhhhHHHHHHHHHhhhhhhhhhhhhHHHHHHHHHHHhhhhhhhhhhhhhhHHHHHHhhHHHHHHHHHHHHHHHHH
Q 006114 113 EFLEKENAHLELEVEKILGELNHQKDQNNLKREKIVQLEISLKNSKQQQLDNSSYQKVLADTTQMYEKKITELIKQLEIE 192 (660)
Q Consensus 113 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~e 192 (660)
+||.+....-...+..||+.+.++.+... .+...| ...|.+.+.+|..+|-.-
T Consensus 7 ~yL~~~~~e~~~~i~~L~~q~~~~~~~i~---~~r~~l------------------------~s~y~~q~~~Lq~qLlq~ 59 (206)
T PF14988_consen 7 EYLKKKDEEKEKKIEKLWKQYIQQLEEIQ---RERQEL------------------------VSRYAKQTSELQDQLLQK 59 (206)
T ss_pred HHHHhhHHHHHHHHHHHHHHHHHHHHHHH---HHHHHH------------------------HHHHHHHHHHHHHHHHHH
Confidence 47788888888999999999988877543 232332 223555555555544433
Q ss_pred HhhhhchHHHHHHHHHHHhhhhhhHHHHhhhhhHHHHHHhhHHHHHHHHHHHHhhhhhhhhhhh
Q 006114 193 HARSEGAEEQVDTMKKLISDNQKSIEQYEMENSTYQKALADTTQLYEKKIAELNKKLEDEHACF 256 (660)
Q Consensus 193 ~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~ 256 (660)
......+..++..| .+++.-..+++.+=-+.++.+..+...+..+..++.-++=.|.+++
T Consensus 60 ~k~~~~l~~eLq~l----~~~~~~k~~qe~eI~~Le~e~~~~~~e~~~~l~~~~~qfl~EK~~L 119 (206)
T PF14988_consen 60 EKEQAKLQQELQAL----KEFRRLKEQQEREIQTLEEELEKMRAEHAEKLQEAESQFLQEKARL 119 (206)
T ss_pred HHHHHHHHHHHHHh----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33333344433322 2333333344444445555555555555555555555555555544
No 331
>KOG0243 consensus Kinesin-like protein [Cytoskeleton]
Probab=85.70 E-value=1e+02 Score=38.28 Aligned_cols=89 Identities=19% Similarity=0.258 Sum_probs=46.8
Q ss_pred hHHHHHHHHHhhh--------------h--hhhhhhhhHHHHHHHHHHHhhhhhhhhhhhhhhHHHHHHhhHHHHHHHHH
Q 006114 121 HLELEVEKILGEL--------------N--HQKDQNNLKREKIVQLEISLKNSKQQQLDNSSYQKVLADTTQMYEKKITE 184 (660)
Q Consensus 121 ~~~~~~~~~~~~~--------------~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 184 (660)
.|-.||.+|+.+| . +.-+....+..+++++|-++.+...+=-+-...+-.....+..+-++...
T Consensus 408 d~~~EIerLK~dl~AaReKnGvyisee~y~~~e~e~~~~~~~ieele~el~~~~~~l~~~~e~~~~~~~~~~~l~~~~~~ 487 (1041)
T KOG0243|consen 408 DLYEEIERLKRDLAAAREKNGVYISEERYTQEEKEKKEMAEQIEELEEELENLEKQLKDLTELYMNQLEIKELLKEEKEK 487 (1041)
T ss_pred HHHHHHHHHHHHHHHhHhhCceEechHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHH
Confidence 4566777777777 1 12234555666666666666655544444444444344444444445555
Q ss_pred HHHHHHHHHhhhhchHHHHHHHHHH
Q 006114 185 LIKQLEIEHARSEGAEEQVDTMKKL 209 (660)
Q Consensus 185 l~~~l~~e~~~~~~~~~~~~~l~~~ 209 (660)
+++.|++-......+.+++.+++..
T Consensus 488 ~k~~L~~~~~el~~~~ee~~~~~~~ 512 (1041)
T KOG0243|consen 488 LKSKLQNKNKELESLKEELQQAKAT 512 (1041)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5555555444444455555554444
No 332
>KOG2274 consensus Predicted importin 9 [Intracellular trafficking, secretion, and vesicular transport; Nuclear structure]
Probab=85.66 E-value=24 Score=42.69 Aligned_cols=138 Identities=14% Similarity=0.087 Sum_probs=83.9
Q ss_pred CCCHHHHHHHHHHHHHhhCC-chhHHHHHHcCCHHHHHHHHccCCCHHHHHHHHHHHHHhhcCchhHHHHHhcCccHHHH
Q 006114 418 SEDPDVQIHAVKVVANLAAE-DINQEKIVEEGGLDALLLLLRTSQNTTILRVASGAIANLAMNEMNQGLIMSRGGGQLLA 496 (660)
Q Consensus 418 s~d~~vr~~Aa~aL~nLa~~-~en~~~Ive~GgI~~Lv~LL~~s~d~~v~~~Aa~AL~nLA~~~~n~~~Ive~g~I~~Ll 496 (660)
+..+....+|.++++..+.. ..+...+-. .+...+..+.-+..+.++..|+.+++..+....... .-.++++.|+
T Consensus 461 ~e~P~Ll~Ra~~~i~~fs~~~~~~~~~~~~--fl~~~v~~l~~~~~~~~ki~a~~~~~~~~~~~vl~~--~~p~ild~L~ 536 (1005)
T KOG2274|consen 461 QESPFLLLRAFLTISKFSSSTVINPQLLQH--FLNATVNALTMDVPPPVKISAVRAFCGYCKVKVLLS--LQPMILDGLL 536 (1005)
T ss_pred ccCHHHHHHHHHHHHHHHhhhccchhHHHH--HHHHHHHhhccCCCCchhHHHHHHHHhccCceeccc--cchHHHHHHH
Confidence 55666666778877755542 222221111 244455556545566678888888887763211110 1255677788
Q ss_pred HhhcCCCCHHHHHHHHHHHHHHhcChhHHHHHHhccHHHHHHHHhc--CCCHHHHHHHHHHHHHhh
Q 006114 497 KTASKTDDPQTLRMVAGALANLCGNEKLHTMLEEDGAIKALLAMVR--SGNIDVIAQVARGLANFA 560 (660)
Q Consensus 497 ~LL~~s~d~~v~~~Aa~aLanLa~~~~~r~~iv~~G~V~~Lv~lL~--s~~~~v~~~Al~aLanLA 560 (660)
.+... ...++......+|+..|..+.--....+....|.++.+.- +.+|-|...+--++-.++
T Consensus 537 qlas~-~s~evl~llmE~Ls~vv~~dpef~as~~skI~P~~i~lF~k~s~DP~V~~~~qd~f~el~ 601 (1005)
T KOG2274|consen 537 QLASK-SSDEVLVLLMEALSSVVKLDPEFAASMESKICPLTINLFLKYSEDPQVASLAQDLFEELL 601 (1005)
T ss_pred HHccc-ccHHHHHHHHHHHHHHhccChhhhhhhhcchhHHHHHHHHHhcCCchHHHHHHHHHHHHH
Confidence 88765 4557888888899988854444455566778888777754 667776666655555444
No 333
>KOG2999 consensus Regulator of Rac1, required for phagocytosis and cell migration [Signal transduction mechanisms]
Probab=85.45 E-value=19 Score=41.30 Aligned_cols=163 Identities=12% Similarity=0.107 Sum_probs=106.8
Q ss_pred HHHHHHHHccCCCHHHHHHHHHHHHHhhcCchhHHHHHhcCccHHHHHhhcCCCC---HHHHHHHHHHHHHHhcChhHHH
Q 006114 450 LDALLLLLRTSQNTTILRVASGAIANLAMNEMNQGLIMSRGGGQLLAKTASKTDD---PQTLRMVAGALANLCGNEKLHT 526 (660)
Q Consensus 450 I~~Lv~LL~~s~d~~v~~~Aa~AL~nLA~~~~n~~~Ive~g~I~~Ll~LL~~s~d---~~v~~~Aa~aLanLa~~~~~r~ 526 (660)
...+..++. +++...+..|..-|..++.++.....++...++..|..++.+... ..++.....++..+....-...
T Consensus 85 a~~i~e~l~-~~~~~~~~~a~k~l~sls~d~~fa~efi~~~gl~~L~~liedg~~~~~~~~L~~~L~af~elmehgvvsW 163 (713)
T KOG2999|consen 85 AKRIMEILT-EGNNISKMEALKELDSLSLDPTFAEEFIRCSGLELLFSLIEDGRVCMSSELLSTSLRAFSELMEHGVVSW 163 (713)
T ss_pred HHHHHHHHh-CCCcHHHHHHHHHHhhccccHHHHHHHHhcchHHHHHHHHHcCccchHHHHHHHHHHHHHHHHhhceeee
Confidence 455677776 445555666889999999999999999999999999999976322 3455555555555442222223
Q ss_pred HHHhccHHHHHHHHhc--CCCHHHHHHHHHHHHHhhccchhhhhhcchhhhHHHhhcChHHHHHHhhcCCCHHHHHHHHH
Q 006114 527 MLEEDGAIKALLAMVR--SGNIDVIAQVARGLANFAKCESRAIVQGQRKGRSHLMEDSALEWLIANSKTNSASTRRHVEL 604 (660)
Q Consensus 527 ~iv~~G~V~~Lv~lL~--s~~~~v~~~Al~aLanLA~~~~~~~aq~~~e~r~~Li~~G~v~~Lv~lL~s~d~~vr~~Aa~ 604 (660)
..+...+|..+..++. --+..+...|+..|-++..++. ..+..+.++--+..|+.++...+..+...|..
T Consensus 164 ~~~~~~fV~~~a~~V~~~~~~a~~~~~AL~~LE~~vl~s~--------~~~~~v~eev~i~~li~hlq~~n~~i~~~aia 235 (713)
T KOG2999|consen 164 ESVSNDFVVSMASYVNAKREDANTLLAALQMLESLVLGSD--------TLRQLVAEEVPIETLIRHLQVSNQRIQTCAIA 235 (713)
T ss_pred eecccHHHHHHHHHHhhhhhcccchHHHHHHHHHHHhCCh--------HHHHHHHhcCcHHHHHHHHHhcchHHHHHHHH
Confidence 3333445555555553 2345567778888888876642 35566777888889999999888888777655
Q ss_pred HHHHhhc--CCccHHHHHh
Q 006114 605 ALCHLAQ--NEDNARDFIS 621 (660)
Q Consensus 605 AL~nLa~--~~e~~~~Ive 621 (660)
.+-.+-. .+..+..+..
T Consensus 236 l~nal~~~a~~~~R~~~~~ 254 (713)
T KOG2999|consen 236 LLNALFRKAPDDKRFEMAK 254 (713)
T ss_pred HHHHHHhhCChHHHHHHHH
Confidence 5555532 2234445544
No 334
>KOG1078 consensus Vesicle coat complex COPI, gamma subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=85.30 E-value=9.9 Score=45.16 Aligned_cols=61 Identities=21% Similarity=0.145 Sum_probs=44.4
Q ss_pred HHHHhcCCCHHHHHHHHHHHHHhhccchhhhhhcchhhhHHHhhcChHHHHHHhhcCCCHHHHHHHHHHHHHhh
Q 006114 537 LLAMVRSGNIDVIAQVARGLANFAKCESRAIVQGQRKGRSHLMEDSALEWLIANSKTNSASTRRHVELALCHLA 610 (660)
Q Consensus 537 Lv~lL~s~~~~v~~~Al~aLanLA~~~~~~~aq~~~e~r~~Li~~G~v~~Lv~lL~s~d~~vr~~Aa~AL~nLa 610 (660)
+.+.+.=.+..++..|+.+|+.|...++. ....+...|.+++.+.|+.+|..|..+|.++-
T Consensus 471 iyNRviLEn~ivRaaAv~alaKfg~~~~~-------------l~~sI~vllkRc~~D~DdevRdrAtf~l~~l~ 531 (865)
T KOG1078|consen 471 IYNRVILENAIVRAAAVSALAKFGAQDVV-------------LLPSILVLLKRCLNDSDDEVRDRATFYLKNLE 531 (865)
T ss_pred HhhhhhhhhhhhHHHHHHHHHHHhcCCCC-------------ccccHHHHHHHHhcCchHHHHHHHHHHHHHhh
Confidence 33334445667888899999988854431 12335567778899999999999999999886
No 335
>COG4026 Uncharacterized protein containing TOPRIM domain, potential nuclease [General function prediction only]
Probab=85.15 E-value=4.5 Score=40.98 Aligned_cols=73 Identities=30% Similarity=0.357 Sum_probs=51.3
Q ss_pred HHHhhHHHHHhhHHHHHHHHHHHHHHHHHhhhhchHHHHHHHHHHHhhHHHHHHhhhhhhhHHHHhhhhHHHHHHHHHhh
Q 006114 53 ECQISYDEAKDNLVTQVELLTAKIEMQQKLRENDKYEFEKQLRESQISYDESMRNLVTRSEFLEKENAHLELEVEKILGE 132 (660)
Q Consensus 53 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 132 (660)
+..-+|++++.||..-+.. |-+|=++|-+.+..|.+. ..|.+.|+.||++|+...+++..+
T Consensus 132 d~ke~~ee~kekl~E~~~E---------------keeL~~eleele~e~ee~----~erlk~le~E~s~LeE~~~~l~~e 192 (290)
T COG4026 132 DLKEDYEELKEKLEELQKE---------------KEELLKELEELEAEYEEV----QERLKRLEVENSRLEEMLKKLPGE 192 (290)
T ss_pred HHHHHHHHHHHHHHHHHHH---------------HHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHhchhH
Confidence 4455666666655444433 667778888888888876 678888999999999999998877
Q ss_pred hhhhhhhhhhHH
Q 006114 133 LNHQKDQNNLKR 144 (660)
Q Consensus 133 ~~~~~~~~~~~~ 144 (660)
..+-+..-+.+.
T Consensus 193 v~~L~~r~~ELe 204 (290)
T COG4026 193 VYDLKKRWDELE 204 (290)
T ss_pred HHHHHHHHHHhc
Confidence 655554444433
No 336
>KOG4360 consensus Uncharacterized coiled coil protein [Function unknown]
Probab=85.14 E-value=33 Score=39.04 Aligned_cols=141 Identities=24% Similarity=0.175 Sum_probs=87.6
Q ss_pred hhhhhhhHHHHhhhhHHHHHHHHHhhhhhhhhhhhhHHHHHHHHHHHhhhhhhhhhhhhhhHHHHHHhhHHHHHHHHHHH
Q 006114 107 NLVTRSEFLEKENAHLELEVEKILGELNHQKDQNNLKREKIVQLEISLKNSKQQQLDNSSYQKVLADTTQMYEKKITELI 186 (660)
Q Consensus 107 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ 186 (660)
.|-.|..-+++||.+|-.+..-++-+- -.-..+.+++ +.++-+.....+-.+.-+-
T Consensus 163 aL~ekLk~~~een~~lr~k~~llk~Et-------~~~~~keq~~-----------------y~~~~KelrdtN~q~~s~~ 218 (596)
T KOG4360|consen 163 ALQEKLKPLEEENTQLRSKAMLLKTET-------LTYEEKEQQL-----------------YGDCVKELRDTNTQARSGQ 218 (596)
T ss_pred HHHhhcCChHHHHHHHHHHHHHHHhhh-------cchhHHHHHH-----------------HHHHHHHHHHHHHHHHHHH
Confidence 355666667777777766665544321 1111111111 2344555555566666777
Q ss_pred HHHHHHHhhhhchHHHHHHHHHHHhhhhhhHHHHhhhhhHHHHHHhhHHHHHHHHHHHHhhhhhhhhhhhhhhHHhHHHH
Q 006114 187 KQLEIEHARSEGAEEQVDTMKKLISDNQKSIEQYEMENSTYQKALADTTQLYEKKIAELNKKLEDEHACFEGAVEQLDMV 266 (660)
Q Consensus 187 ~~l~~e~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 266 (660)
+.|+.-+......-+++.+|..+|.|.|+.+.-+-.|+ +.++..
T Consensus 219 eel~~kt~el~~q~Ee~skLlsql~d~qkk~k~~~~Ek------------------------------------eel~~~ 262 (596)
T KOG4360|consen 219 EELQSKTKELSRQQEENSKLLSQLVDLQKKIKYLRHEK------------------------------------EELDEH 262 (596)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHH------------------------------------HHHHHH
Confidence 77777676667777888888888888886554333322 233333
Q ss_pred HHHhhhhhccccchhHHHHHHHHHHHHHHHHHhHHHHHHHHHH
Q 006114 267 KKLLSDYQNSNQGQKEVHELCVKLKETRQLHESAVYEVQTLKS 309 (660)
Q Consensus 267 ~~~~~~~~~~~~~~~e~~~Lk~~Le~e~~~~e~~e~E~~~lks 309 (660)
=..-+|.|. +-..|..+++..+....+....+++|++.|++
T Consensus 263 Lq~~~da~~--ql~aE~~EleDkyAE~m~~~~EaeeELk~lrs 303 (596)
T KOG4360|consen 263 LQAYKDAQR--QLTAELEELEDKYAECMQMLHEAEEELKCLRS 303 (596)
T ss_pred HHHHHhhHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcc
Confidence 344455553 33456678888889999999999999999887
No 337
>PF10168 Nup88: Nuclear pore component; InterPro: IPR019321 Nup88 can be divided into two structural domains; the N-terminal two-thirds of the protein have no obvious structural motifs. It is, however, where it binds to Nup98; one of the components of the nuclear pore. The C-terminal end is a predicted coiled-coil domain []. Nup88 is over expressed in tumour cells [].
Probab=84.88 E-value=95 Score=37.45 Aligned_cols=31 Identities=13% Similarity=0.145 Sum_probs=21.1
Q ss_pred hHHHHHHHHHHHHHHHHHhHHHHHHHHHHHH
Q 006114 281 KEVHELCVKLKETRQLHESAVYEVQTLKSEY 311 (660)
Q Consensus 281 ~e~~~Lk~~Le~e~~~~e~~e~E~~~lks~l 311 (660)
.....++..|..+..+...+..++++++..+
T Consensus 685 ~Q~~~I~~iL~~~~~~I~~~v~~ik~i~~~~ 715 (717)
T PF10168_consen 685 SQKRTIKEILKQQGEEIDELVKQIKNIKKIV 715 (717)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 3346677777777777777777777666554
No 338
>TIGR01005 eps_transp_fam exopolysaccharide transport protein family. The model describes the exopolysaccharide transport protein family in bacteria. The transport protein is part of a large genetic locus which is associated with exopolysaccharide (EPS) biosynthesis. Detailed molecular characterization and gene fusion analysis revealed atleast seven gene products are involved in the overall regulation, which among other things, include exopolysaccharide biosynthesis, property of conferring virulence and exopolysaccharide export.
Probab=84.77 E-value=67 Score=38.74 Aligned_cols=131 Identities=18% Similarity=0.182 Sum_probs=74.7
Q ss_pred HHHHHHHHHHHHHHHHhhhhchHHHHHHHHHHHhhhhhhHHHHhhhhh-----HHHHHHhhHHHHHHHHHHHHhhhhhhh
Q 006114 178 YEKKITELIKQLEIEHARSEGAEEQVDTMKKLISDNQKSIEQYEMENS-----TYQKALADTTQLYEKKIAELNKKLEDE 252 (660)
Q Consensus 178 ~~~~~~~l~~~l~~e~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~-----~~~~~l~~~~~~~~~~~~~~~~~~~~~ 252 (660)
.+.++.++..+|..-++.+..++-..+.++..+............-++ ..-..|..--...+.+++++..+..+.
T Consensus 235 ~~~~L~~l~~ql~~a~~~~~~a~a~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~i~~L~~~l~~l~~~~~~l~~~y~~~ 314 (754)
T TIGR01005 235 ATQQLAELNTELSRARANRAAAEGTADSVKKALQNGGSLDVLPEVLSSQLKLEDLIQRLRERQAELRATIADLSTTMLAN 314 (754)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCccchhhhhcCcccccHHHHHHHHHHHHHHHHHHHHHHhhCCC
Confidence 346788888888888888888888888888777643211100000000 111111111223467778888888899
Q ss_pred hhhhhhhHHhHHHHHHHhhhhhccccchhHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHH
Q 006114 253 HACFEGAVEQLDMVKKLLSDYQNSNQGQKEVHELCVKLKETRQLHESAVYEVQTLKSEYKN 313 (660)
Q Consensus 253 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~Lk~~Le~e~~~~e~~e~E~~~lks~l~~ 313 (660)
|-..-.+..|++.+++.+....... +..++..++...+..+++...+..++.++.+
T Consensus 315 hP~v~~l~~qi~~l~~~i~~e~~~~-----~~~~~~~~~~a~~~~~~L~~~l~~~~~~~~~ 370 (754)
T TIGR01005 315 HPRVVAAKSSLADLDAQIRSELQKI-----TKSLLMQADAAQARESQLVSDVNQLKAASAQ 370 (754)
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHH-----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 9999999999999988774321111 1223334444444444555555555555543
No 339
>KOG2032 consensus Uncharacterized conserved protein [Function unknown]
Probab=84.73 E-value=36 Score=38.72 Aligned_cols=149 Identities=15% Similarity=0.057 Sum_probs=85.1
Q ss_pred CCHHHHHHhh----CCCCHHHHHHHHHHHHHhhCC-chhHHHHHHcCCHHHHHHHHccCCCHHHHHHHHHHHHHhhcCch
Q 006114 407 VGLPKILQLL----TSEDPDVQIHAVKVVANLAAE-DINQEKIVEEGGLDALLLLLRTSQNTTILRVASGAIANLAMNEM 481 (660)
Q Consensus 407 ggI~~LV~LL----~s~d~~vr~~Aa~aL~nLa~~-~en~~~Ive~GgI~~Lv~LL~~s~d~~v~~~Aa~AL~nLA~~~~ 481 (660)
|-+..++..+ .+++..++..|+..|++.+.. |.-..... .-.+..++.-|.++.+.+|.-.|..+|.-+..-..
T Consensus 254 ~lL~s~~~~la~ka~dp~a~~r~~a~r~L~~~as~~P~kv~th~-~~~ldaii~gL~D~~~~~V~leam~~Lt~v~~~~~ 332 (533)
T KOG2032|consen 254 GLLGSVLLSLANKATDPSAKSRGMACRGLGNTASGAPDKVRTHK-TTQLDAIIRGLYDDLNEEVQLEAMKCLTMVLEKAS 332 (533)
T ss_pred ccHHHHHHHHHHhccCchhHHHHHHHHHHHHHhccCcHHHHHhH-HHHHHHHHHHHhcCCccHHHHHHHHHHHHHHHhhh
Confidence 4455555333 367889999999999999986 53322222 22477777777767777787777777766543211
Q ss_pred hHHHHHhcCccHH---HHHhhcCCCCHHHHHHHHHHHHHHh--cChhHHHHHHh--ccHHHHHHHHhcCCCHHHHHHHHH
Q 006114 482 NQGLIMSRGGGQL---LAKTASKTDDPQTLRMVAGALANLC--GNEKLHTMLEE--DGAIKALLAMVRSGNIDVIAQVAR 554 (660)
Q Consensus 482 n~~~Ive~g~I~~---Ll~LL~~s~d~~v~~~Aa~aLanLa--~~~~~r~~iv~--~G~V~~Lv~lL~s~~~~v~~~Al~ 554 (660)
+ .-+..+.++. +..+. ++.+++++.+|..++..|+ .....+..+.+ .|...+++-.+..++|.+. .||+
T Consensus 333 ~--~~l~~~~l~ialrlR~l~-~se~~~~R~aa~~Lfg~L~~l~g~~~e~~Fte~v~k~~~~lllhl~d~~p~va-~ACr 408 (533)
T KOG2032|consen 333 N--DDLESYLLNIALRLRTLF-DSEDDKMRAAAFVLFGALAKLAGGGWEEFFTEQVKKRLAPLLLHLQDPNPYVA-RACR 408 (533)
T ss_pred h--cchhhhchhHHHHHHHHH-HhcChhhhhhHHHHHHHHHHHcCCCchhhhHHHHHhccccceeeeCCCChHHH-HHHH
Confidence 1 1122222332 33344 4578888888886666665 22333344442 2333445555667777653 4445
Q ss_pred HHHHhh
Q 006114 555 GLANFA 560 (660)
Q Consensus 555 aLanLA 560 (660)
.....|
T Consensus 409 ~~~~~c 414 (533)
T KOG2032|consen 409 SELRTC 414 (533)
T ss_pred HHHHhc
Confidence 444444
No 340
>KOG1248 consensus Uncharacterized conserved protein [Function unknown]
Probab=84.60 E-value=1.1e+02 Score=38.25 Aligned_cols=211 Identities=12% Similarity=0.068 Sum_probs=114.6
Q ss_pred CCCCHHHHHHHHHHHHHhhCCchhHHHHHHcCCHHHHHHHHcc---CCCHHHHHHHHHHHHHhhcC-c-hhHHHHHhcCc
Q 006114 417 TSEDPDVQIHAVKVVANLAAEDINQEKIVEEGGLDALLLLLRT---SQNTTILRVASGAIANLAMN-E-MNQGLIMSRGG 491 (660)
Q Consensus 417 ~s~d~~vr~~Aa~aL~nLa~~~en~~~Ive~GgI~~Lv~LL~~---s~d~~v~~~Aa~AL~nLA~~-~-~n~~~Ive~g~ 491 (660)
++.+..+|..+..+|..++..+......... +..+.+.|.+ +.+..++...+.+|..|-.. + ++...+.. .
T Consensus 664 ~~~~~~vQkK~yrlL~~l~~~~s~~~~~~q~--i~~I~n~L~ds~qs~~~~~~~~rl~~L~~L~~~~~~e~~~~i~k--~ 739 (1176)
T KOG1248|consen 664 NSSSTKVQKKAYRLLEELSSSPSGEGLVEQR--IDDIFNSLLDSFQSSSSPAQASRLKCLKRLLKLLSAEHCDLIPK--L 739 (1176)
T ss_pred ccccHHHHHHHHHHHHHHhcCCchhhHHHHH--HHHHHHHHHHHHhccchHHHHHHHHHHHHHHHhccHHHHHHHHH--H
Confidence 3568899999999999998875554443332 3333333322 33445667777777766543 3 22222222 2
Q ss_pred cHHHHHhhcCCCCHHHHHHHHHHHHHHhcChhHHHHHHhcc------HHHHHHHHhcCC----CHHHHHHHHHHHHHhhc
Q 006114 492 GQLLAKTASKTDDPQTLRMVAGALANLCGNEKLHTMLEEDG------AIKALLAMVRSG----NIDVIAQVARGLANFAK 561 (660)
Q Consensus 492 I~~Ll~LL~~s~d~~v~~~Aa~aLanLa~~~~~r~~iv~~G------~V~~Lv~lL~s~----~~~v~~~Al~aLanLA~ 561 (660)
||-++=.++ ..|...+++|..+|..|+. .....+.| .+...+.++..+ .+.+...-+-+++.+..
T Consensus 740 I~EvIL~~K-e~n~~aR~~Af~lL~~i~~----i~~~~d~g~e~~~~~lnefl~~Isagl~gd~~~~~as~Ivai~~il~ 814 (1176)
T KOG1248|consen 740 IPEVILSLK-EVNVKARRNAFALLVFIGA----IQSSLDDGNEPASAILNEFLSIISAGLVGDSTRVVASDIVAITHILQ 814 (1176)
T ss_pred HHHHHHhcc-cccHHHHhhHHHHHHHHHH----HHhhhcccccchHHHHHHHHHHHHhhhcccHHHHHHHHHHHHHHHHH
Confidence 344333334 4677888888888888873 12223333 444455554422 22232222444444442
Q ss_pred cchhhhhhcchhhhHHHhhcChHHHHHHhhcCCCHHHHHHHHHHHHHhhcCC-ccHHHHHhcCcHHHHHHHHhcCChHHH
Q 006114 562 CESRAIVQGQRKGRSHLMEDSALEWLIANSKTNSASTRRHVELALCHLAQNE-DNARDFISRGGAKELVQISIESSREDI 640 (660)
Q Consensus 562 ~~~~~~aq~~~e~r~~Li~~G~v~~Lv~lL~s~d~~vr~~Aa~AL~nLa~~~-e~~~~Ive~G~l~~Lv~lL~s~s~~~i 640 (660)
... ..-....-.+.+..+...+.+.++.++..|...+..++... +....--..-.++.+..++.... ..+
T Consensus 815 e~~--------~~ld~~~l~~li~~V~~~L~s~sreI~kaAI~fikvlv~~~pe~~l~~~~~~LL~sll~ls~d~k-~~~ 885 (1176)
T KOG1248|consen 815 EFK--------NILDDETLEKLISMVCLYLASNSREIAKAAIGFIKVLVYKFPEECLSPHLEELLPSLLALSHDHK-IKV 885 (1176)
T ss_pred HHh--------ccccHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHcCCHHHHhhhHHHHHHHHHHHHHhhh-HHH
Confidence 211 01111122345556666788899999999999999887643 32221122236677777665433 334
Q ss_pred HHHHH
Q 006114 641 RNLAK 645 (660)
Q Consensus 641 r~~A~ 645 (660)
+.+++
T Consensus 886 r~Kvr 890 (1176)
T KOG1248|consen 886 RKKVR 890 (1176)
T ss_pred HHHHH
Confidence 44444
No 341
>PF13851 GAS: Growth-arrest specific micro-tubule binding
Probab=84.51 E-value=48 Score=33.44 Aligned_cols=115 Identities=20% Similarity=0.234 Sum_probs=51.8
Q ss_pred HHHHHHHHhhHHH-------HHHhhhhhhhHHHHhhhhHHHHHHHHHhhhhhhhhhhhhHHHHHHHHHHHhhhhhhhhhh
Q 006114 91 EKQLRESQISYDE-------SMRNLVTRSEFLEKENAHLELEVEKILGELNHQKDQNNLKREKIVQLEISLKNSKQQQLD 163 (660)
Q Consensus 91 e~~~~~~~~~~~~-------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 163 (660)
|+-..+..+=|.+ .|++|+...+-+.+--.+.+..|.++..++..-...-.-...++..|.-.|.+......
T Consensus 8 e~af~~iK~YYndIT~~NL~lIksLKeei~emkk~e~~~~k~m~ei~~eN~~L~epL~~a~~e~~eL~k~L~~y~kdK~- 86 (201)
T PF13851_consen 8 EKAFQEIKNYYNDITLNNLELIKSLKEEIAEMKKKEERNEKLMAEISQENKRLSEPLKKAEEEVEELRKQLKNYEKDKQ- 86 (201)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHH-
Confidence 3444455555544 35555555555555445555555555444443333333333334444333332221111
Q ss_pred hhhhHHHHHHhhHHHHHHHHHHHHHHHHHHhhhhchHHHHHHHHHH
Q 006114 164 NSSYQKVLADTTQMYEKKITELIKQLEIEHARSEGAEEQVDTMKKL 209 (660)
Q Consensus 164 ~~~~~~~~~~~~~~~~~~~~~l~~~l~~e~~~~~~~~~~~~~l~~~ 209 (660)
....+-.....++++++.|...-+.=..+...++.+-+.|...
T Consensus 87 ---~L~~~k~rl~~~ek~l~~Lk~e~evL~qr~~kle~ErdeL~~k 129 (201)
T PF13851_consen 87 ---SLQNLKARLKELEKELKDLKWEHEVLEQRFEKLEQERDELYRK 129 (201)
T ss_pred ---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 1112222233445566666555555555555555555555443
No 342
>PF15035 Rootletin: Ciliary rootlet component, centrosome cohesion
Probab=84.36 E-value=14 Score=36.82 Aligned_cols=58 Identities=24% Similarity=0.300 Sum_probs=51.1
Q ss_pred HHHHHHHHHHHHHHhhhhchHHHHHHHHHHHhhhhhhHHHHhhhhhHHHHHHhhHHHHHHHHHHH
Q 006114 180 KKITELIKQLEIEHARSEGAEEQVDTMKKLISDNQKSIEQYEMENSTYQKALADTTQLYEKKIAE 244 (660)
Q Consensus 180 ~~~~~l~~~l~~e~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~ 244 (660)
-.+.+++..|+.|..++..+.+-+.-|..+|.+.. ..|..++.-|..+|+-|++=-.|
T Consensus 60 ~dLe~~l~rLeEEqqR~~~L~qvN~lLReQLEq~~-------~~N~~L~~dl~klt~~~~~l~~e 117 (182)
T PF15035_consen 60 PDLEEALIRLEEEQQRSEELAQVNALLREQLEQAR-------KANEALQEDLQKLTQDWERLRDE 117 (182)
T ss_pred ccHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHH
Confidence 45667999999999999999999999999999999 89999999999999998883333
No 343
>KOG1949 consensus Uncharacterized conserved protein [Function unknown]
Probab=84.29 E-value=35 Score=40.46 Aligned_cols=142 Identities=15% Similarity=0.033 Sum_probs=87.8
Q ss_pred HHHHHHHccCCCHHHHHHHHHHHHHhh--cCchh----HHHHHhcCccHHHHHhhcCCCCHHHHHHHHHHHHHHhcChhH
Q 006114 451 DALLLLLRTSQNTTILRVASGAIANLA--MNEMN----QGLIMSRGGGQLLAKTASKTDDPQTLRMVAGALANLCGNEKL 524 (660)
Q Consensus 451 ~~Lv~LL~~s~d~~v~~~Aa~AL~nLA--~~~~n----~~~Ive~g~I~~Ll~LL~~s~d~~v~~~Aa~aLanLa~~~~~ 524 (660)
|.|.+-|. .+|..|+.+|+..+.++. .+|+. .+.+++ .-+..|..+|.+ +.|.|+..|...++.+.. .
T Consensus 177 p~l~R~L~-a~Ns~VrsnAa~lf~~~fP~~dpd~~~e~mD~i~~-kQf~~l~~LL~d-~~p~VRS~a~~gv~k~~s---~ 250 (1005)
T KOG1949|consen 177 PILWRGLK-ARNSEVRSNAALLFVEAFPIRDPDLHAEEMDSIIQ-KQFEELYSLLED-PYPMVRSTAILGVCKITS---K 250 (1005)
T ss_pred HHHHHhhc-cCchhhhhhHHHHHHHhccCCCCCccHHHHHHHHH-HHHHHHHHHhcC-CCchHHHHHHHHHHHHHH---H
Confidence 44555565 689999999999999885 23443 333333 346788899975 889999988866665541 0
Q ss_pred HHHHHhccHHHHHHHH----h-cCCCHHHHHHHHHHHHHhhccchhhhhhcchhhhHHHhhcChHHHHHHhhcCCCHHHH
Q 006114 525 HTMLEEDGAIKALLAM----V-RSGNIDVIAQVARGLANFAKCESRAIVQGQRKGRSHLMEDSALEWLIANSKTNSASTR 599 (660)
Q Consensus 525 r~~iv~~G~V~~Lv~l----L-~s~~~~v~~~Al~aLanLA~~~~~~~aq~~~e~r~~Li~~G~v~~Lv~lL~s~d~~vr 599 (660)
-..++-...+.-|+.. + ..+..+|+.....+|..++..... .. + -.-++|.+-..|.+.+..||
T Consensus 251 fWe~iP~~i~~~ll~kI~d~~a~dt~s~VR~svf~gl~~~l~np~s---------h~-~-le~~Lpal~~~l~D~se~VR 319 (1005)
T KOG1949|consen 251 FWEMIPPTILIDLLKKITDELAFDTSSDVRCSVFKGLPMILDNPLS---------HP-L-LEQLLPALRYSLHDNSEKVR 319 (1005)
T ss_pred HHHHcCHHHHHHHHHHHHHHhhhccchheehhHhcCcHHHHcCccc---------hh-H-HHHHHHhcchhhhccchhHH
Confidence 0122222222222222 2 244568888888888888754211 00 1 12245555566777889999
Q ss_pred HHHHHHHHHh
Q 006114 600 RHVELALCHL 609 (660)
Q Consensus 600 ~~Aa~AL~nL 609 (660)
-++...|..+
T Consensus 320 vA~vd~ll~i 329 (1005)
T KOG1949|consen 320 VAFVDMLLKI 329 (1005)
T ss_pred HHHHHHHHHH
Confidence 8888887766
No 344
>PF07814 WAPL: Wings apart-like protein regulation of heterochromatin; InterPro: IPR022771 This entry contains sequences expressed in eukaryotic organisms (metazoa, fungi, plants) bearing high similarity to the WAPL conserved region of D. melanogaster wings apart-like protein. This protein is involved in the regulation of heterochromatin structure []. hWAPL (Q7Z5K2 from SWISSPROT), the human homologue, is found to play a role in the development of cervical carcinogenesis, and is thought to have similar functions to Drosophila wapl protein []. Malfunction of the hWAPL pathway is thought to activate an apoptotic pathway that consequently leads to cell death []. This entry includes proteins from metazoa, fungi and plants.
Probab=84.10 E-value=68 Score=35.23 Aligned_cols=92 Identities=21% Similarity=0.258 Sum_probs=64.1
Q ss_pred HHHHHHhhC-CCCHHHHHHHHHHHHHhhCCchhHHHHHHcCCHHHHHHHHccCCCHHHHHHHHH-HHHHhhcCchhHHHH
Q 006114 409 LPKILQLLT-SEDPDVQIHAVKVVANLAAEDINQEKIVEEGGLDALLLLLRTSQNTTILRVASG-AIANLAMNEMNQGLI 486 (660)
Q Consensus 409 I~~LV~LL~-s~d~~vr~~Aa~aL~nLa~~~en~~~Ive~GgI~~Lv~LL~~s~d~~v~~~Aa~-AL~nLA~~~~n~~~I 486 (660)
+..++.-+. +.+..+|+.++--|+.-+.++..+..+...|.+..++..+.+.++..+...++. +++-++.+..+...+
T Consensus 23 v~ylld~l~~~~~~s~Rr~sll~La~K~~~~~Fr~~~ra~g~~~~l~~~l~~~~~d~~~~l~~a~i~~~l~~d~~~~~l~ 102 (361)
T PF07814_consen 23 VEYLLDGLESSSSSSVRRSSLLELASKCADPQFRRQFRAHGLVKRLFKALSDAPDDDILALATAAILYVLSRDGLNMHLL 102 (361)
T ss_pred HHHHHhhcccCCCccHHHHHHHHHHHHhCCHHHHHHHHHcCcHHHHHHHhccccchHHHHHHHHHHHHHHccCCcchhhh
Confidence 444554444 456688999988898888899999999999999999999965555534444444 444445554445555
Q ss_pred HhcCccHHHHHhhc
Q 006114 487 MSRGGGQLLAKTAS 500 (660)
Q Consensus 487 ve~g~I~~Ll~LL~ 500 (660)
...+....++.++.
T Consensus 103 ~~~~~~~ll~~Ll~ 116 (361)
T PF07814_consen 103 LDRDSLRLLLKLLK 116 (361)
T ss_pred hchhHHHHHHHHhc
Confidence 55666666677775
No 345
>KOG1058 consensus Vesicle coat complex COPI, beta subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=83.90 E-value=39 Score=40.30 Aligned_cols=59 Identities=20% Similarity=0.175 Sum_probs=31.3
Q ss_pred CCCHHHHHHHHHHHHHhhcC-chh-HHHHHh--------------cCccHHHHHhhcCCCCHHHHHHHHHHHHHHh
Q 006114 460 SQNTTILRVASGAIANLAMN-EMN-QGLIMS--------------RGGGQLLAKTASKTDDPQTLRMVAGALANLC 519 (660)
Q Consensus 460 s~d~~v~~~Aa~AL~nLA~~-~~n-~~~Ive--------------~g~I~~Ll~LL~~s~d~~v~~~Aa~aLanLa 519 (660)
+++|.....|+.++..|+.. ++| .+.|+- .|.+--++++|+ ++|-++++-+.....-|+
T Consensus 271 S~~p~alk~Aa~~~i~l~~kesdnnvklIvldrl~~l~~~~~~il~~l~mDvLrvLs-s~dldvr~Ktldi~ldLv 345 (948)
T KOG1058|consen 271 SNDPTALKAAASTYIDLLVKESDNNVKLIVLDRLSELKALHEKILQGLIMDVLRVLS-SPDLDVRSKTLDIALDLV 345 (948)
T ss_pred cCCHHHHHHHHHHHHHHHHhccCcchhhhhHHHHHHHhhhhHHHHHHHHHHHHHHcC-cccccHHHHHHHHHHhhh
Confidence 34555556666666655543 333 232321 122223445553 578888888776666665
No 346
>TIGR03185 DNA_S_dndD DNA sulfur modification protein DndD. This model describes the DndB protein encoded by an operon associated with a sulfur-containing modification to DNA. The operon is sporadically distributed in bacteria, much like some restriction enzyme operons. DndD is described as a putative ATPase. The small number of examples known so far include species from among the Firmicutes, Actinomycetes, Proteobacteria, and Cyanobacteria.
Probab=83.63 E-value=1e+02 Score=36.58 Aligned_cols=38 Identities=13% Similarity=0.187 Sum_probs=18.0
Q ss_pred hHHHHHHHHHHHHhhhhhhhhhhhhhhHHhHHHHHHHh
Q 006114 233 DTTQLYEKKIAELNKKLEDEHACFEGAVEQLDMVKKLL 270 (660)
Q Consensus 233 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 270 (660)
+.-..++++|.++...++.-....+.+.+++..+++.+
T Consensus 428 e~l~~l~~~l~~~~~~~~~~~~~~~~~~~~i~~~~~~~ 465 (650)
T TIGR03185 428 EELGEAQNELFRSEAEIEELLRQLETLKEAIEALRKTL 465 (650)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33444555555555555544444444444444444433
No 347
>PF08317 Spc7: Spc7 kinetochore protein; InterPro: IPR013253 This entry consists of cell division proteins which are required for kinetochore-spindle association [].
Probab=83.49 E-value=71 Score=34.57 Aligned_cols=63 Identities=24% Similarity=0.268 Sum_probs=31.3
Q ss_pred hhhhhhHHhHHHHHHHhhhhhccccchhHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHhh
Q 006114 254 ACFEGAVEQLDMVKKLLSDYQNSNQGQKEVHELCVKLKETRQLHESAVYEVQTLKSEYKNLLEEK 318 (660)
Q Consensus 254 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~Lk~~Le~e~~~~e~~e~E~~~lks~l~~l~~~~ 318 (660)
++++.+..++..++..... ....+.+++..++..|.......+....++..++.++..+...-
T Consensus 184 ~~~~~L~~e~~~Lk~~~~e--~~~~D~~eL~~lr~eL~~~~~~i~~~k~~l~el~~el~~l~~~i 246 (325)
T PF08317_consen 184 ERKAELEEELENLKQLVEE--IESCDQEELEALRQELAEQKEEIEAKKKELAELQEELEELEEKI 246 (325)
T ss_pred HHHHHHHHHHHHHHHHHhh--hhhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444444445555444433 22334455566666665555555555555555555555444433
No 348
>COG5240 SEC21 Vesicle coat complex COPI, gamma subunit [Intracellular trafficking and secretion]
Probab=83.49 E-value=15 Score=42.30 Aligned_cols=230 Identities=17% Similarity=0.186 Sum_probs=115.1
Q ss_pred HHHHHhhCCCCHHHHHHHHHHHHHhhCCchhHHHHHHcCCHHHHHHHHccCCCHHHHHHHHHHHHHhhcC-ch-------
Q 006114 410 PKILQLLTSEDPDVQIHAVKVVANLAAEDINQEKIVEEGGLDALLLLLRTSQNTTILRVASGAIANLAMN-EM------- 481 (660)
Q Consensus 410 ~~LV~LL~s~d~~vr~~Aa~aL~nLa~~~en~~~Ive~GgI~~Lv~LL~~s~d~~v~~~Aa~AL~nLA~~-~~------- 481 (660)
|.|-..|++.-..|...++++++.++..- ....+++. .|..|-.+|. ++....+-.|.+.|..||+. |.
T Consensus 267 pfL~~wls~k~emV~lE~Ar~v~~~~~~n-v~~~~~~~-~vs~L~~fL~-s~rv~~rFsA~Riln~lam~~P~kv~vcN~ 343 (898)
T COG5240 267 PFLNSWLSDKFEMVFLEAARAVCALSEEN-VGSQFVDQ-TVSSLRTFLK-STRVVLRFSAMRILNQLAMKYPQKVSVCNK 343 (898)
T ss_pred HHHHHHhcCcchhhhHHHHHHHHHHHHhc-cCHHHHHH-HHHHHHHHHh-cchHHHHHHHHHHHHHHHhhCCceeeecCh
Confidence 33335555666788888999988877622 11222222 4666767776 77888888999999999876 22
Q ss_pred -hHHHHH---------------hcC---ccHHHHHhhcC---CCCHHHHHHHHHHHHHHh-cChh--------HHHHHHh
Q 006114 482 -NQGLIM---------------SRG---GGQLLAKTASK---TDDPQTLRMVAGALANLC-GNEK--------LHTMLEE 530 (660)
Q Consensus 482 -n~~~Iv---------------e~g---~I~~Ll~LL~~---s~d~~v~~~Aa~aLanLa-~~~~--------~r~~iv~ 530 (660)
.-..|- ..| .|..|+.++.. .-+......+.-+|..|| ..|. +-..+.+
T Consensus 344 evEsLIsd~Nr~IstyAITtLLKTGt~e~idrLv~~I~sfvhD~SD~FKiI~ida~rsLsl~Fp~k~~s~l~FL~~~L~~ 423 (898)
T COG5240 344 EVESLISDENRTISTYAITTLLKTGTEETIDRLVNLIPSFVHDMSDGFKIIAIDALRSLSLLFPSKKLSYLDFLGSSLLQ 423 (898)
T ss_pred hHHHHhhcccccchHHHHHHHHHcCchhhHHHHHHHHHHHHHhhccCceEEeHHHHHHHHhhCcHHHHHHHHHHHHHHHh
Confidence 111111 111 12222222211 001122223444555555 2222 2223345
Q ss_pred ccHHHH---HHHHhc---CCCHHHHHHHHHHHHHhhccch-hhhhh---c--chhhhHHHhhcChHHHHHHhhcCCCHHH
Q 006114 531 DGAIKA---LLAMVR---SGNIDVIAQVARGLANFAKCES-RAIVQ---G--QRKGRSHLMEDSALEWLIANSKTNSAST 598 (660)
Q Consensus 531 ~G~V~~---Lv~lL~---s~~~~v~~~Al~aLanLA~~~~-~~~aq---~--~~e~r~~Li~~G~v~~Lv~lL~s~d~~v 598 (660)
.||+.. +++.+. ...|+.++.|+..|+.+-.+.. ..++. + .++|-.+-.-...+..+..-+--.+..|
T Consensus 424 eGg~eFK~~~Vdaisd~~~~~p~skEraLe~LC~fIEDcey~~I~vrIL~iLG~EgP~a~~P~~yvrhIyNR~iLEN~iv 503 (898)
T COG5240 424 EGGLEFKKYMVDAISDAMENDPDSKERALEVLCTFIEDCEYHQITVRILGILGREGPRAKTPGKYVRHIYNRLILENNIV 503 (898)
T ss_pred cccchHHHHHHHHHHHHHhhCchHHHHHHHHHHHHHhhcchhHHHHHHHHHhcccCCCCCCcchHHHHHHHHHHHhhhHH
Confidence 676543 333332 4567777777777776543321 11110 0 0000000001113334444444467889
Q ss_pred HHHHHHHHHHhhcCCccHHHHHhcCcHHHHHHHHhcCChHHHHHHHH
Q 006114 599 RRHVELALCHLAQNEDNARDFISRGGAKELVQISIESSREDIRNLAK 645 (660)
Q Consensus 599 r~~Aa~AL~nLa~~~e~~~~Ive~G~l~~Lv~lL~s~s~~~ir~~A~ 645 (660)
|.+|..||..++.+... .+.-..+...|.+.+.+.+ +.+|..|.
T Consensus 504 RsaAv~aLskf~ln~~d--~~~~~sv~~~lkRclnD~D-deVRdrAs 547 (898)
T COG5240 504 RSAAVQALSKFALNISD--VVSPQSVENALKRCLNDQD-DEVRDRAS 547 (898)
T ss_pred HHHHHHHHHHhccCccc--cccHHHHHHHHHHHhhccc-HHHHHHHH
Confidence 99999999888765432 1122234456677776544 34555555
No 349
>PF12530 DUF3730: Protein of unknown function (DUF3730) ; InterPro: IPR022542 This domain is found in eukaryotes, and is typically between 220 and 262 amino acids in length.
Probab=83.42 E-value=58 Score=33.48 Aligned_cols=200 Identities=18% Similarity=0.160 Sum_probs=109.3
Q ss_pred HHHHHH-hhCCCCHHHHHHHHHHHHHhhCCc-hhHHHHHHcCCHHHHHHHHccCCCHHHHHHHHHHHHHhhcCchhHHHH
Q 006114 409 LPKILQ-LLTSEDPDVQIHAVKVVANLAAED-INQEKIVEEGGLDALLLLLRTSQNTTILRVASGAIANLAMNEMNQGLI 486 (660)
Q Consensus 409 I~~LV~-LL~s~d~~vr~~Aa~aL~nLa~~~-en~~~Ive~GgI~~Lv~LL~~s~d~~v~~~Aa~AL~nLA~~~~n~~~I 486 (660)
+|.|+. +-+..++..+...+.+|..++.+. .+...+ +..|..+.. .+.......+.+.+..+-...+- .
T Consensus 2 l~~L~~~l~~~~~~~~~~~~L~~L~~l~~~~~~~~~~v-----~~~L~~L~~-~~~~~~~~~~~rLl~~lw~~~~r---~ 72 (234)
T PF12530_consen 2 LPLLLYKLGKISDPELQLPLLEALPSLACHKNVCVPPV-----LQTLVSLVE-QGSLELRYVALRLLTLLWKANDR---H 72 (234)
T ss_pred hHHHHHHhcCCCChHHHHHHHHHHHHHhccCccchhHH-----HHHHHHHHc-CCchhHHHHHHHHHHHHHHhCch---H
Confidence 455664 445678999999999999999976 333222 333444443 44444444556666655433221 1
Q ss_pred HhcCccHHHHHh---------hcCCCCHHHHHHHHHHHHHHh-cChhHHHHHHhccHHHHHHHHh-cCCCHHHHHHHHHH
Q 006114 487 MSRGGGQLLAKT---------ASKTDDPQTLRMVAGALANLC-GNEKLHTMLEEDGAIKALLAMV-RSGNIDVIAQVARG 555 (660)
Q Consensus 487 ve~g~I~~Ll~L---------L~~s~d~~v~~~Aa~aLanLa-~~~~~r~~iv~~G~V~~Lv~lL-~s~~~~v~~~Al~a 555 (660)
+ +.+..++.. ......-......+.+++.+| ..|. .....++.|..++ .+.++.++..|+.+
T Consensus 73 f--~~L~~~L~~~~~r~~~~~~~~~~~~~~~i~~a~s~~~ic~~~p~-----~g~~ll~~ls~~L~~~~~~~~~alale~ 145 (234)
T PF12530_consen 73 F--PFLQPLLLLLILRIPSSFSSKDEFWECLISIAASIRDICCSRPD-----HGVDLLPLLSGCLNQSCDEVAQALALEA 145 (234)
T ss_pred H--HHHHHHHHHHHhhcccccCCCcchHHHHHHHHHHHHHHHHhChh-----hHHHHHHHHHHHHhccccHHHHHHHHHH
Confidence 1 223322222 111122244444556888887 4444 3344677888888 78888999999999
Q ss_pred HHHhhccchhhhhhcchhhhHHHhh-cChHHHHHHhhcCC-CHHHHHHHHHHHHHhhcCC--ccHHHHHhcCcHHHHHHH
Q 006114 556 LANFAKCESRAIVQGQRKGRSHLME-DSALEWLIANSKTN-SASTRRHVELALCHLAQNE--DNARDFISRGGAKELVQI 631 (660)
Q Consensus 556 LanLA~~~~~~~aq~~~e~r~~Li~-~G~v~~Lv~lL~s~-d~~vr~~Aa~AL~nLa~~~--e~~~~Ive~G~l~~Lv~l 631 (660)
|+.||..+ +++ ...-..+.+.+..+ .+.+....+..++.+.... ..........++..+-.+
T Consensus 146 l~~Lc~~~--------------vvd~~s~w~vl~~~l~~~~rp~v~~~l~~l~~l~~~~~~~~e~~~~~~~~~l~~lW~~ 211 (234)
T PF12530_consen 146 LAPLCEAE--------------VVDFYSAWKVLQKKLSLDYRPLVLKSLCSLFALVPQGAVDSEEYEELKRQILQLLWEY 211 (234)
T ss_pred HHHHHHHh--------------hccHHHHHHHHHHhcCCccchHHHHHHHHHHHHhccccCChhhhhHHHHHHHHHHHhh
Confidence 99999432 222 11222333334322 3444444333333333322 223444556677788887
Q ss_pred HhcCChH
Q 006114 632 SIESSRE 638 (660)
Q Consensus 632 L~s~s~~ 638 (660)
..+.+..
T Consensus 212 ~~~~~~~ 218 (234)
T PF12530_consen 212 TSSSDVN 218 (234)
T ss_pred ccccccc
Confidence 7766543
No 350
>KOG1003 consensus Actin filament-coating protein tropomyosin [Cytoskeleton]
Probab=82.90 E-value=55 Score=32.87 Aligned_cols=122 Identities=21% Similarity=0.265 Sum_probs=87.7
Q ss_pred HHHHHHHHHh-------hHHHHHHhhhhhhhHHHH----------hhhhHHHHHHHHHhhhhhhhhhhhhHHHHHHHHHH
Q 006114 90 FEKQLRESQI-------SYDESMRNLVTRSEFLEK----------ENAHLELEVEKILGELNHQKDQNNLKREKIVQLEI 152 (660)
Q Consensus 90 ~e~~~~~~~~-------~~~~~~~~~~~~~~~~~~----------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 152 (660)
+|.+|++++. -|.|+++.|+..---|+. .-..|+.+++-+-+.|..--......+++....+-
T Consensus 65 ~e~qLkEAk~iaE~adrK~eEVarkL~iiE~dLE~~eeraE~~Es~~~eLeEe~~~~~~nlk~l~~~ee~~~q~~d~~e~ 144 (205)
T KOG1003|consen 65 QEAQLKEAKHIAEKADRKYEEVARKLVIIEGELERAEERAEAAESQSEELEEDLRILDSNLKSLSAKEEKLEQKEEKYEE 144 (205)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHhHhHHHHHHHHHHHHhhhHHHHHH
Confidence 4566666642 578888877755333333 33445555555555554444445555666667777
Q ss_pred HhhhhhhhhhhhhhhHHHHHHhhHHHHHHHHHHHHHHHHHHhhhhchHHHHHHHHHHHh
Q 006114 153 SLKNSKQQQLDNSSYQKVLADTTQMYEKKITELIKQLEIEHARSEGAEEQVDTMKKLIS 211 (660)
Q Consensus 153 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~e~~~~~~~~~~~~~l~~~l~ 211 (660)
.+|....+--++-++-+|+....+.+++++.+|-..+...+..+..|.+++++.=+.|.
T Consensus 145 ~ik~ltdKLkEaE~rAE~aERsVakLeke~DdlE~kl~~~k~ky~~~~~eLD~~~~~L~ 203 (205)
T KOG1003|consen 145 ELKELTDKLKEAETRAEFAERRVAKLEKERDDLEEKLEEAKEKYEEAKKELDETLQELE 203 (205)
T ss_pred HHHHHHHHHhhhhhhHHHHHHHHHHHcccHHHHHHhhHHHHHHHHHHHHHHHHHHHHhh
Confidence 78888888888899999999999999999999999999999999999999887655443
No 351
>COG0419 SbcC ATPase involved in DNA repair [DNA replication, recombination, and repair]
Probab=82.78 E-value=1.3e+02 Score=37.19 Aligned_cols=34 Identities=21% Similarity=0.396 Sum_probs=15.6
Q ss_pred HHHHHHhhhhhhhhhhhhhhHHhHHHHHHHhhhh
Q 006114 240 KKIAELNKKLEDEHACFEGAVEQLDMVKKLLSDY 273 (660)
Q Consensus 240 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 273 (660)
.+|.++.+++..-.+.++.++.++..+..++...
T Consensus 586 ~~l~~~r~~~~~~~~~~~~l~~~~~~l~~~~~~~ 619 (908)
T COG0419 586 EELEELRERLKELKKKLKELEERLSQLEELLQSL 619 (908)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 3344444333333333455555555555555544
No 352
>KOG2137 consensus Protein kinase [Signal transduction mechanisms]
Probab=82.75 E-value=18 Score=42.64 Aligned_cols=132 Identities=18% Similarity=0.084 Sum_probs=91.2
Q ss_pred CHHHHHHHHccCCCHHHHHHHHHHHHHhhcCchhHHHHHhcCccHHHHHhhcCCCCHHHHHHHHHHHHHHhcChhHHHHH
Q 006114 449 GLDALLLLLRTSQNTTILRVASGAIANLAMNEMNQGLIMSRGGGQLLAKTASKTDDPQTLRMVAGALANLCGNEKLHTML 528 (660)
Q Consensus 449 gI~~Lv~LL~~s~d~~v~~~Aa~AL~nLA~~~~n~~~Ive~g~I~~Ll~LL~~s~d~~v~~~Aa~aLanLa~~~~~r~~i 528 (660)
.+|.|...+. +.+..++..+...+...+..-+ ...+..-++|.+-.+.....+..++.+++.|++-++. .....
T Consensus 390 IlplL~~S~~-~~~~~iQ~~~L~~lptv~e~iD--~~~vk~~ilP~l~~l~~~tt~~~vkvn~L~c~~~l~q---~lD~~ 463 (700)
T KOG2137|consen 390 ILPLLYRSLE-DSDVQIQELALQILPTVAESID--VPFVKQAILPRLKNLAFKTTNLYVKVNVLPCLAGLIQ---RLDKA 463 (700)
T ss_pred HHHHHHHHhc-CcchhhHHHHHHhhhHHHHhcc--HHHHHHHHHHHhhcchhcccchHHHHHHHHHHHHHHH---HHHHH
Confidence 5677777776 6788899989888888876633 4566677888888887777788899999989888871 11111
Q ss_pred HhccHHHHHHHHhcCCCHHHHHHHHHHHHHhhccchhhhhhcchhhhHHHhhcChHHHHHHhhcCCC
Q 006114 529 EEDGAIKALLAMVRSGNIDVIAQVARGLANFAKCESRAIVQGQRKGRSHLMEDSALEWLIANSKTNS 595 (660)
Q Consensus 529 v~~G~V~~Lv~lL~s~~~~v~~~Al~aLanLA~~~~~~~aq~~~e~r~~Li~~G~v~~Lv~lL~s~d 595 (660)
.-..-+.++...++..+|.+..-.+.+..++..... .| ..+.-+.++|.++.+.....
T Consensus 464 ~v~d~~lpi~~~~~~~dp~iv~~~~~i~~~l~~~~~--------~g-~ev~~~~VlPlli~ls~~~~ 521 (700)
T KOG2137|consen 464 AVLDELLPILKCIKTRDPAIVMGFLRIYEALALIIY--------SG-VEVMAENVLPLLIPLSVAPS 521 (700)
T ss_pred HhHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHhhcc--------cc-eeeehhhhhhhhhhhhhccc
Confidence 111234445555667889988888888877775432 12 33455778888888877654
No 353
>KOG1949 consensus Uncharacterized conserved protein [Function unknown]
Probab=82.25 E-value=44 Score=39.67 Aligned_cols=144 Identities=15% Similarity=0.123 Sum_probs=88.7
Q ss_pred HHHhhCCCCHHHHHHHHHHHHHhhC--Cchh----HHHHHHcCCHHHHHHHHccCCCHHHHHHHHHHHHHhhc-C-chhH
Q 006114 412 ILQLLTSEDPDVQIHAVKVVANLAA--EDIN----QEKIVEEGGLDALLLLLRTSQNTTILRVASGAIANLAM-N-EMNQ 483 (660)
Q Consensus 412 LV~LL~s~d~~vr~~Aa~aL~nLa~--~~en----~~~Ive~GgI~~Lv~LL~~s~d~~v~~~Aa~AL~nLA~-~-~~n~ 483 (660)
|.+-|+..+..||.+|+..+.++.- +|+. ...+++. -...|..+|. ++-|.|+..|..-+..+.. . .-.-
T Consensus 179 l~R~L~a~Ns~VrsnAa~lf~~~fP~~dpd~~~e~mD~i~~k-Qf~~l~~LL~-d~~p~VRS~a~~gv~k~~s~fWe~iP 256 (1005)
T KOG1949|consen 179 LWRGLKARNSEVRSNAALLFVEAFPIRDPDLHAEEMDSIIQK-QFEELYSLLE-DPYPMVRSTAILGVCKITSKFWEMIP 256 (1005)
T ss_pred HHHhhccCchhhhhhHHHHHHHhccCCCCCccHHHHHHHHHH-HHHHHHHHhc-CCCchHHHHHHHHHHHHHHHHHHHcC
Confidence 3456678899999999999998765 3333 3445543 4677888887 7888888776655544422 1 1111
Q ss_pred HHHHhcCccHHHHHhhcCCCCHHHHHHHHHHHHHHhcChhHHHHHHhccHHHHHHHHhcCCCHHHHHHHHHHHHHhh
Q 006114 484 GLIMSRGGGQLLAKTASKTDDPQTLRMVAGALANLCGNEKLHTMLEEDGAIKALLAMVRSGNIDVIAQVARGLANFA 560 (660)
Q Consensus 484 ~~Ive~g~I~~Ll~LL~~s~d~~v~~~Aa~aLanLa~~~~~r~~iv~~G~V~~Lv~lL~s~~~~v~~~Al~aLanLA 560 (660)
..|+. ..+..+..-+......+|+..+..+|-.+..+|-....+- -++|+|=..|......|+..++-.|..|-
T Consensus 257 ~~i~~-~ll~kI~d~~a~dt~s~VR~svf~gl~~~l~np~sh~~le--~~Lpal~~~l~D~se~VRvA~vd~ll~ik 330 (1005)
T KOG1949|consen 257 PTILI-DLLKKITDELAFDTSSDVRCSVFKGLPMILDNPLSHPLLE--QLLPALRYSLHDNSEKVRVAFVDMLLKIK 330 (1005)
T ss_pred HHHHH-HHHHHHHHHhhhccchheehhHhcCcHHHHcCccchhHHH--HHHHhcchhhhccchhHHHHHHHHHHHHH
Confidence 11111 1122222222223445788888888988888776654332 24556666677778888888887776554
No 354
>PF14073 Cep57_CLD: Centrosome localisation domain of Cep57
Probab=81.98 E-value=57 Score=32.36 Aligned_cols=106 Identities=20% Similarity=0.303 Sum_probs=74.7
Q ss_pred HHHHhhhhhhhhhhhhhhHHhHHHHHHHhhhhhccccchhHHHHHHHHHHHHH----HHHHhHHHHHHHHHHHHHHHHHh
Q 006114 242 IAELNKKLEDEHACFEGAVEQLDMVKKLLSDYQNSNQGQKEVHELCVKLKETR----QLHESAVYEVQTLKSEYKNLLEE 317 (660)
Q Consensus 242 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~Lk~~Le~e~----~~~e~~e~E~~~lks~l~~l~~~ 317 (660)
-.+|.-||..--+||.-.|.||+-|++.+.....-.. .+.+-...+++++ ....+..+-+..|-.++..|...
T Consensus 59 ~~dl~~qL~aAEtRCslLEKQLeyMRkmv~~ae~er~---~~le~q~~l~~e~~~~~~~~~~klekLe~LE~E~~rLt~~ 135 (178)
T PF14073_consen 59 NQDLSSQLSAAETRCSLLEKQLEYMRKMVESAEKERN---AVLEQQVSLQRERQQDQSELQAKLEKLEKLEKEYLRLTAT 135 (178)
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh---HHHHHHHHHHHHhccchhhHHHHHHHHHHHHHHHHHHHHH
Confidence 4577778888889999999999999999876543322 2233345555552 23344445566666777778777
Q ss_pred hhhccHHHHHHHHHHHHHHHHhhhhHHHHHHHH
Q 006114 318 KETMSDELQAARQRLLVEEKQRKAIEYELVKLK 350 (660)
Q Consensus 318 ~~~~~eel~~~~k~l~~e~~~rkkLe~E~~~l~ 350 (660)
-...+.-|..+...|..|-++|+-+..--+.++
T Consensus 136 Q~~ae~Ki~~LE~KL~eEehqRKlvQdkAaqLQ 168 (178)
T PF14073_consen 136 QSLAETKIKELEEKLQEEEHQRKLVQDKAAQLQ 168 (178)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 777777789999999999998887666555444
No 355
>KOG2933 consensus Uncharacterized conserved protein [Function unknown]
Probab=81.97 E-value=9.5 Score=40.85 Aligned_cols=143 Identities=17% Similarity=0.158 Sum_probs=89.7
Q ss_pred HHHHHHhhCCCCHHHHHHHHHHHHHhhC-CchhHHHHHHcCCHHHHHHHHccCCCHHHHHHHHHHHHHhhcCchhHHHHH
Q 006114 409 LPKILQLLTSEDPDVQIHAVKVVANLAA-EDINQEKIVEEGGLDALLLLLRTSQNTTILRVASGAIANLAMNEMNQGLIM 487 (660)
Q Consensus 409 I~~LV~LL~s~d~~vr~~Aa~aL~nLa~-~~en~~~Ive~GgI~~Lv~LL~~s~d~~v~~~Aa~AL~nLA~~~~n~~~Iv 487 (660)
+...+..|.+.+......++..|.-|+. +++........ .|..++.-++ .....|-+.||.+++.|+..-.+.-.-.
T Consensus 90 l~~~l~~L~s~dW~~~vdgLn~irrLs~fh~e~l~~~L~~-vii~vvkslK-NlRS~VsraA~~t~~difs~ln~~i~~~ 167 (334)
T KOG2933|consen 90 LKQALKKLSSDDWEDKVDGLNSIRRLSEFHPESLNPMLHE-VIIAVVKSLK-NLRSAVSRAACMTLADIFSSLNNSIDQE 167 (334)
T ss_pred HHHHHHHhchHHHHHHhhhHHHHHHHHhhhHHHHHHHHHH-HHHHHHHHhc-ChHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5556677888888888888888888777 66554444433 4667777776 5667788889999998876522211111
Q ss_pred hcCccHHHHHhhcCCCCHHHHHHHHHHHHHHhcChhHHHHHHhccHHHHHHHHhcCCCHHHHHHHHHHHHHhh
Q 006114 488 SRGGGQLLAKTASKTDDPQTLRMVAGALANLCGNEKLHTMLEEDGAIKALLAMVRSGNIDVIAQVARGLANFA 560 (660)
Q Consensus 488 e~g~I~~Ll~LL~~s~d~~v~~~Aa~aLanLa~~~~~r~~iv~~G~V~~Lv~lL~s~~~~v~~~Al~aLanLA 560 (660)
-.+.+..|+.-.. -.+..++..|-.+|..+...-.. ..+++.|+..+...++.++..++.++.++.
T Consensus 168 ld~lv~~Ll~ka~-~dnrFvreda~kAL~aMV~~vtp------~~~L~~L~~~~~~~n~r~r~~a~~~~~~~v 233 (334)
T KOG2933|consen 168 LDDLVTQLLHKAS-QDNRFVREDAEKALVAMVNHVTP------QKLLRKLIPILQHSNPRVRAKAALCFSRCV 233 (334)
T ss_pred HHHHHHHHHhhhc-ccchHHHHHHHHHHHHHHhccCh------HHHHHHHHHHHhhhchhhhhhhhccccccc
Confidence 1222222222211 13456777777888777643222 135666777788888888888877665543
No 356
>PF08167 RIX1: rRNA processing/ribosome biogenesis
Probab=81.96 E-value=9.8 Score=36.99 Aligned_cols=108 Identities=19% Similarity=0.118 Sum_probs=69.7
Q ss_pred CHHHHHHhhCCCCHHHHHHHHHHHHHhhCCchhHHHHHHcCC--HHHHHHHHccCCCHHHHHHHHHHHHHhhcC----ch
Q 006114 408 GLPKILQLLTSEDPDVQIHAVKVVANLAAEDINQEKIVEEGG--LDALLLLLRTSQNTTILRVASGAIANLAMN----EM 481 (660)
Q Consensus 408 gI~~LV~LL~s~d~~vr~~Aa~aL~nLa~~~en~~~Ive~Gg--I~~Lv~LL~~s~d~~v~~~Aa~AL~nLA~~----~~ 481 (660)
.+..+..+|.+.++..|-.++..+..++..-. -..+...|+ +..|+.+|....++.+...|+.+|..|... |+
T Consensus 26 l~~ri~~LL~s~~~~~rw~G~~Ll~~~~~~~~-~e~l~~~~~~W~~~Ll~~L~~~~~~~~~~~ai~~L~~l~~~~~~~p~ 104 (165)
T PF08167_consen 26 LVTRINSLLQSKSAYSRWAGLCLLKVTVEQCS-WEILLSHGSQWLRALLSILEKPDPPSVLEAAIITLTRLFDLIRGKPT 104 (165)
T ss_pred HHHHHHHHhCCCChhhHHHHHHHHHHHHHHhh-HHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHhcCCCc
Confidence 35567788899999999888887777666321 244445444 888999998767778888898888887543 55
Q ss_pred hHHHHHh---cCccHHHHHhhcCCCCHHHHHHHHHHHHHHh
Q 006114 482 NQGLIMS---RGGGQLLAKTASKTDDPQTLRMVAGALANLC 519 (660)
Q Consensus 482 n~~~Ive---~g~I~~Ll~LL~~s~d~~v~~~Aa~aLanLa 519 (660)
..+.+.. .+.+..++.++.+ +.....++.+|..+.
T Consensus 105 l~Rei~tp~l~~~i~~ll~l~~~---~~~~~~~l~~L~~ll 142 (165)
T PF08167_consen 105 LTREIATPNLPKFIQSLLQLLQD---SSCPETALDALATLL 142 (165)
T ss_pred hHHHHhhccHHHHHHHHHHHHhc---cccHHHHHHHHHHHH
Confidence 5544443 3345555555542 334444555555443
No 357
>KOG1991 consensus Nuclear transport receptor RANBP7/RANBP8 (importin beta superfamily) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=81.87 E-value=73 Score=39.16 Aligned_cols=96 Identities=13% Similarity=0.062 Sum_probs=61.5
Q ss_pred HhCCCHHHHHHhhCCCCHHHHHHHHHHHHHhhCCc-hhHHHHHHcCCHHHHHHHHccCCCHHHHHHHHHHHHHhhcCch-
Q 006114 404 CDEVGLPKILQLLTSEDPDVQIHAVKVVANLAAED-INQEKIVEEGGLDALLLLLRTSQNTTILRVASGAIANLAMNEM- 481 (660)
Q Consensus 404 ~e~ggI~~LV~LL~s~d~~vr~~Aa~aL~nLa~~~-en~~~Ive~GgI~~Lv~LL~~s~d~~v~~~Aa~AL~nLA~~~~- 481 (660)
++.-.++.++..++++..-+|..||++++.++..+ .+..... .++....++|.++.+-.|+..|+-||..+..+..
T Consensus 459 mE~flv~hVfP~f~s~~g~Lrarac~vl~~~~~~df~d~~~l~--~ale~t~~~l~~d~~lPV~VeAalALq~fI~~~~~ 536 (1010)
T KOG1991|consen 459 MEYFLVNHVFPEFQSPYGYLRARACWVLSQFSSIDFKDPNNLS--EALELTHNCLLNDNELPVRVEAALALQSFISNQEQ 536 (1010)
T ss_pred HHHHHHHHhhHhhcCchhHHHHHHHHHHHHHHhccCCChHHHH--HHHHHHHHHhccCCcCchhhHHHHHHHHHHhcchh
Confidence 33334555566778888899999999999988521 1112222 2466677778767788899999999998877633
Q ss_pred hHHHHHh--cCccHHHHHhhcC
Q 006114 482 NQGLIMS--RGGGQLLAKTASK 501 (660)
Q Consensus 482 n~~~Ive--~g~I~~Ll~LL~~ 501 (660)
+...+-. .+.+..|+.+...
T Consensus 537 ~~e~~~~hvp~~mq~lL~L~ne 558 (1010)
T KOG1991|consen 537 ADEKVSAHVPPIMQELLKLSNE 558 (1010)
T ss_pred hhhhHhhhhhHHHHHHHHHHHh
Confidence 3233322 3344455555544
No 358
>KOG3665 consensus ZYG-1-like serine/threonine protein kinases [General function prediction only]
Probab=81.82 E-value=11 Score=45.23 Aligned_cols=158 Identities=13% Similarity=0.113 Sum_probs=103.4
Q ss_pred hhHHHHHhCCCHHHHHHhhCC-CCHHHHHHHHHHHHHhhCCchhHHHHHHcCCHH--HHHHHHccCCCHHHHHHHHHHHH
Q 006114 398 ATIAKICDEVGLPKILQLLTS-EDPDVQIHAVKVVANLAAEDINQEKIVEEGGLD--ALLLLLRTSQNTTILRVASGAIA 474 (660)
Q Consensus 398 ~~~~~I~e~ggI~~LV~LL~s-~d~~vr~~Aa~aL~nLa~~~en~~~Ive~GgI~--~Lv~LL~~s~d~~v~~~Aa~AL~ 474 (660)
.....+++.||+..+...+.. .....+..+.+.+++++...+++........+. .+-.++....+.+....|++.|+
T Consensus 504 ~~C~~~l~~~g~~~~~~~l~~f~~~~~~~~il~~l~n~~~~~~~~~~~~~~~~~~~~~f~~~~~~w~~~ersY~~~siLa 583 (699)
T KOG3665|consen 504 ETCKEFLDNGGMKLLFKCLESFDNEELHRKILGLLGNLAEVLELRELLMIFEFIDFSVFKVLLNKWDSIERSYNAASILA 583 (699)
T ss_pred HHHHHHHhcccHHHHHHHHhhccchhHHHHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHHHHHhhcchhhHHHHHHHHHH
Confidence 355668899999999999874 677899999999999998554433322221222 33335554555577888899888
Q ss_pred HhhcCch------hHH----HHHh--------------cCccHH-HHHhhcCCCCHHHHHHHHHHHHHHh-cChhHHHHH
Q 006114 475 NLAMNEM------NQG----LIMS--------------RGGGQL-LAKTASKTDDPQTLRMVAGALANLC-GNEKLHTML 528 (660)
Q Consensus 475 nLA~~~~------n~~----~Ive--------------~g~I~~-Ll~LL~~s~d~~v~~~Aa~aLanLa-~~~~~r~~i 528 (660)
.+..+.+ .+. .+++ ...+.+ +..++..+..+..+..|.|++.+++ .+++++..+
T Consensus 584 ~ll~~~~~~~~~~~r~~~~~~l~e~i~~~~~~~~~~~~~~~f~~~~~~il~~s~~~g~~lWal~ti~~~~~~~~~~~~~~ 663 (699)
T KOG3665|consen 584 LLLSDSEKTTECVFRNSVNELLVEAISRWLTSEIRVINDRSFFPRILRILRLSKSDGSQLWALWTIKNVLEQNKEYCKLV 663 (699)
T ss_pred HHHhCCCcCccccchHHHHHHHHHHhhccCccceeehhhhhcchhHHHHhcccCCCchHHHHHHHHHHHHHcChhhhhhh
Confidence 8876411 111 1111 123344 5556666677788888999999998 778888888
Q ss_pred HhccHHHHHHHHhcCC-CHHHHHHHHHH
Q 006114 529 EEDGAIKALLAMVRSG-NIDVIAQVARG 555 (660)
Q Consensus 529 v~~G~V~~Lv~lL~s~-~~~v~~~Al~a 555 (660)
...|+++.+...-... ..++...+...
T Consensus 664 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 691 (699)
T KOG3665|consen 664 RESNGFELIENIRVLSEVVDVKEEAVLV 691 (699)
T ss_pred HhccchhhhhhcchhHHHHHHHHHHHHH
Confidence 8999999887775422 33344444333
No 359
>PF12031 DUF3518: Domain of unknown function (DUF3518); InterPro: IPR021906 This presumed domain is functionally uncharacterised. This domain is found in eukaryotes. This domain is about 260 amino acids in length. This domain is found associated with PF01388 from PFAM.
Probab=81.76 E-value=3.1 Score=43.05 Aligned_cols=81 Identities=20% Similarity=0.244 Sum_probs=63.7
Q ss_pred HHHHHHHHHHHHhhcCchhHHHHHhcCc-------cHHHHHhhcCCCCHHHHHHHHHHHHHHhcChh-HH-HHHHhccHH
Q 006114 464 TILRVASGAIANLAMNEMNQGLIMSRGG-------GQLLAKTASKTDDPQTLRMVAGALANLCGNEK-LH-TMLEEDGAI 534 (660)
Q Consensus 464 ~v~~~Aa~AL~nLA~~~~n~~~Ive~g~-------I~~Ll~LL~~s~d~~v~~~Aa~aLanLa~~~~-~r-~~iv~~G~V 534 (660)
.-++.|..+|+.|+..+.|.+.|...+- +..|++++....++-.++.|.-.|.+||..++ .+ ......++|
T Consensus 139 SPqrlaLEaLcKLsV~e~NVDliLaTpp~sRlE~l~~~L~r~l~~~e~~v~REfAvvlL~~La~~~~~~~r~iA~q~~~i 218 (257)
T PF12031_consen 139 SPQRLALEALCKLSVIENNVDLILATPPFSRLERLFHTLVRLLGMREDQVCREFAVVLLSNLAQGDEAAARAIAMQKPCI 218 (257)
T ss_pred CHHHHHHHHHHHhheeccCcceeeeCCCHHHHHHHHHHHHHHhccccchhHHHHHHHHHHHHhcccHHHHHHHHHhhchH
Confidence 3588999999999999999999887654 45566777778899999999999999994443 33 334467899
Q ss_pred HHHHHHhcCC
Q 006114 535 KALLAMVRSG 544 (660)
Q Consensus 535 ~~Lv~lL~s~ 544 (660)
..|+..+...
T Consensus 219 ~~Li~FiE~a 228 (257)
T PF12031_consen 219 SHLIAFIEDA 228 (257)
T ss_pred HHHHHHHHHH
Confidence 9999998643
No 360
>PF07814 WAPL: Wings apart-like protein regulation of heterochromatin; InterPro: IPR022771 This entry contains sequences expressed in eukaryotic organisms (metazoa, fungi, plants) bearing high similarity to the WAPL conserved region of D. melanogaster wings apart-like protein. This protein is involved in the regulation of heterochromatin structure []. hWAPL (Q7Z5K2 from SWISSPROT), the human homologue, is found to play a role in the development of cervical carcinogenesis, and is thought to have similar functions to Drosophila wapl protein []. Malfunction of the hWAPL pathway is thought to activate an apoptotic pathway that consequently leads to cell death []. This entry includes proteins from metazoa, fungi and plants.
Probab=81.73 E-value=16 Score=40.08 Aligned_cols=93 Identities=17% Similarity=0.204 Sum_probs=65.6
Q ss_pred HHHHHHHHccCCCHHHHHHHHHHHHHhhcCchhHHHHHhcCccHHHHHhhcCCCCHHHHHHHHHHHHHH-hcChhHHHHH
Q 006114 450 LDALLLLLRTSQNTTILRVASGAIANLAMNEMNQGLIMSRGGGQLLAKTASKTDDPQTLRMVAGALANL-CGNEKLHTML 528 (660)
Q Consensus 450 I~~Lv~LL~~s~d~~v~~~Aa~AL~nLA~~~~n~~~Ive~g~I~~Ll~LL~~s~d~~v~~~Aa~aLanL-a~~~~~r~~i 528 (660)
|..++.-|..+....+|+.++.-|+.-+.++..+..+..+|.+..++..+.+.++..+...++.++..+ +.+...-..+
T Consensus 23 v~ylld~l~~~~~~s~Rr~sll~La~K~~~~~Fr~~~ra~g~~~~l~~~l~~~~~d~~~~l~~a~i~~~l~~d~~~~~l~ 102 (361)
T PF07814_consen 23 VEYLLDGLESSSSSSVRRSSLLELASKCADPQFRRQFRAHGLVKRLFKALSDAPDDDILALATAAILYVLSRDGLNMHLL 102 (361)
T ss_pred HHHHHhhcccCCCccHHHHHHHHHHHHhCCHHHHHHHHHcCcHHHHHHHhccccchHHHHHHHHHHHHHHccCCcchhhh
Confidence 666666666556667899999999999999999999999999999999996655544554454444444 4444333334
Q ss_pred HhccHHHHHHHHhc
Q 006114 529 EEDGAIKALLAMVR 542 (660)
Q Consensus 529 v~~G~V~~Lv~lL~ 542 (660)
.+.+....++.++.
T Consensus 103 ~~~~~~~ll~~Ll~ 116 (361)
T PF07814_consen 103 LDRDSLRLLLKLLK 116 (361)
T ss_pred hchhHHHHHHHHhc
Confidence 45566666677776
No 361
>PF11707 Npa1: Ribosome 60S biogenesis N-terminal; InterPro: IPR021714 Npa1p is required for ribosome biogenesis and operates in the same functional environment as Rsa3p and Dbp6p during early maturation of 60S ribosomal subunits []. The protein partners of Npa1p include eight putative helicases as well as the novel Npa2p factor. Npa1p can also associate with a subset of H/ACA and C/D small nucleolar RNPs (snoRNPs) involved in the chemical modification of residues in the vicinity of the peptidyl transferase centre []. The protein has also been referred to as Urb1, and this domain at the N-terminal is one of several conserved regions along the length.
Probab=81.33 E-value=76 Score=34.34 Aligned_cols=161 Identities=15% Similarity=0.137 Sum_probs=113.7
Q ss_pred HHHHhCCCHHHHHHhhCCCCHHHHHHHHHHHHHhhC-Cc-hhHHHHHH-cCC-HHHHHHHHccC----CC--------HH
Q 006114 401 AKICDEVGLPKILQLLTSEDPDVQIHAVKVVANLAA-ED-INQEKIVE-EGG-LDALLLLLRTS----QN--------TT 464 (660)
Q Consensus 401 ~~I~e~ggI~~LV~LL~s~d~~vr~~Aa~aL~nLa~-~~-en~~~Ive-~Gg-I~~Lv~LL~~s----~d--------~~ 464 (660)
+.|+... +..+.+.|.+....+...++..|.+++. +. ..+..+.. -+. .+.|..++... .+ +.
T Consensus 51 ~~iL~~~-~k~lyr~L~~~~~~~~~~~LrLL~~iv~f~~g~~a~~v~~~fd~~~~~l~kll~~~~~~~~~~~~~~~~~~s 129 (330)
T PF11707_consen 51 RSILQNH-LKLLYRSLSSSKPSLTNPALRLLTAIVSFDGGALAREVLRSFDFSLKSLPKLLTPRKKEKEKDSESSKSKPS 129 (330)
T ss_pred HHHHHHH-HHHHHHHhCcCcHHHHHHHHHHHHHHHccCCHHHHHHHHHhcCCchhhHHHHhccccccccccccccccCcC
Confidence 4455444 7888899998888888899999999988 43 44555553 332 56666776321 11 27
Q ss_pred HHHHHHHHHHHhhcC--chhHHHHHh-cCccHHHHHhhcCCCCHHHHHHHHHHHHH-Hhc----ChhHHHHHHhccHHHH
Q 006114 465 ILRVASGAIANLAMN--EMNQGLIMS-RGGGQLLAKTASKTDDPQTLRMVAGALAN-LCG----NEKLHTMLEEDGAIKA 536 (660)
Q Consensus 465 v~~~Aa~AL~nLA~~--~~n~~~Ive-~g~I~~Ll~LL~~s~d~~v~~~Aa~aLan-La~----~~~~r~~iv~~G~V~~ 536 (660)
+|......+..+... +..+..++. .+.+..++.-+.. +++++......+|.. +.. ....+..+-+...+..
T Consensus 130 iR~~fI~F~Lsfl~~~~~~~~~~lL~~~~~~~~l~k~l~~-D~~~~v~~iL~~l~~~Vl~~~~v~r~~K~~~fn~~~L~~ 208 (330)
T PF11707_consen 130 IRTNFIRFWLSFLSSGDPELKRDLLSQKKLMSALFKGLRK-DPPETVILILETLKDKVLKDSSVSRSTKCKLFNEWTLSQ 208 (330)
T ss_pred HHHHHHHHHHHHHccCCHHHHHHHHHcCchHHHHHhcccC-CCHHHHHHHHHHHHHHhccCCCCChhhhhhhcCHHHHHH
Confidence 888887776666543 666777765 5567778888865 677888888888874 433 3456666777888999
Q ss_pred HHHHhcCCCH----HHHHHHHHHHHHhhccc
Q 006114 537 LLAMVRSGNI----DVIAQVARGLANFAKCE 563 (660)
Q Consensus 537 Lv~lL~s~~~----~v~~~Al~aLanLA~~~ 563 (660)
|+.+....++ .+...+-..|..+|...
T Consensus 209 l~~Ly~~~~~~~~~~~~~~vh~fL~~lcT~p 239 (330)
T PF11707_consen 209 LASLYSRDGEDEKSSVADLVHEFLLALCTDP 239 (330)
T ss_pred HHHHhcccCCcccchHHHHHHHHHHHHhcCC
Confidence 9998887766 88888999999888543
No 362
>KOG0301 consensus Phospholipase A2-activating protein (contains WD40 repeats) [Lipid transport and metabolism]
Probab=81.32 E-value=33 Score=40.28 Aligned_cols=156 Identities=13% Similarity=0.167 Sum_probs=84.6
Q ss_pred HHHHHHHHHHHHhhCCchhHHHHHH----cCCHHHHHHHHccCCCHHHHHHHHHHHHHhhcCchhHHHHHhc--CccHHH
Q 006114 422 DVQIHAVKVVANLAAEDINQEKIVE----EGGLDALLLLLRTSQNTTILRVASGAIANLAMNEMNQGLIMSR--GGGQLL 495 (660)
Q Consensus 422 ~vr~~Aa~aL~nLa~~~en~~~Ive----~GgI~~Lv~LL~~s~d~~v~~~Aa~AL~nLA~~~~n~~~Ive~--g~I~~L 495 (660)
+.+--|+-+|.-+..++..-..+.. ...+..++..+. .++..+..++++|+|+..++.++..+... -.+..+
T Consensus 559 ~~~fPalDilRl~v~h~~~~s~~~~~~~~~~~~~~li~~~~--~~~an~ll~vR~L~N~f~~~~g~~~~~s~~~~i~~~~ 636 (745)
T KOG0301|consen 559 EMMFPALDILRLAVKHHSSNSLFCDREEGQNLVGTLIPILN--ADPANQLLVVRCLANLFSNPAGRELFMSRLESILDPV 636 (745)
T ss_pred HHhhhHHHHHHHHHhccchhhhhhhhhhhhHHHHhhhcccc--cchhHHHHHHHHHHHhccCHHHHHHHHHHHHHHhhhh
Confidence 3344555555555554333222222 223445555554 35666778999999999999988888763 222333
Q ss_pred HHhhcCCCCHHHHHHHHHHHHHHhc--ChhHHHHHHhccHHHHHHHHhc-----CCCHHHHHHHHHHHHHhhccchhhhh
Q 006114 496 AKTASKTDDPQTLRMVAGALANLCG--NEKLHTMLEEDGAIKALLAMVR-----SGNIDVIAQVARGLANFAKCESRAIV 568 (660)
Q Consensus 496 l~LL~~s~d~~v~~~Aa~aLanLa~--~~~~r~~iv~~G~V~~Lv~lL~-----s~~~~v~~~Al~aLanLA~~~~~~~a 568 (660)
+.. +..++..++.+.+....|++. .... -+.|+.+.+..++. ..+-+.....+.||++|+..++-+
T Consensus 637 ~~~-~s~~~knl~ia~atlaln~sv~l~~~~----~~~~~~~~l~~ai~~~~e~~~d~EA~yR~l~AlgtL~t~~~~~-- 709 (745)
T KOG0301|consen 637 IEA-SSLSNKNLQIALATLALNYSVLLIQDN----EQLEGKEVLLSAISTLLEPVDDLEAIYRLLVALGTLMTVDASV-- 709 (745)
T ss_pred hhh-hcccchhHHHHHHHHHHHHHHHHHhcc----cccchHHHHHHHHHhhcccchhHHHHHHHHHHHHhhccccHHH--
Confidence 322 223445666666655556551 1111 11466666665554 223345677888899998764322
Q ss_pred hcchhhhHHHhhcChHHHHHHhhcC
Q 006114 569 QGQRKGRSHLMEDSALEWLIANSKT 593 (660)
Q Consensus 569 q~~~e~r~~Li~~G~v~~Lv~lL~s 593 (660)
..+...-.+..++.-+.+
T Consensus 710 -------~~~A~~~~v~sia~~~~~ 727 (745)
T KOG0301|consen 710 -------IQLAKNRSVDSIAKKLKE 727 (745)
T ss_pred -------HHHHHhcCHHHHHHHHHH
Confidence 223334455555555443
No 363
>KOG0211 consensus Protein phosphatase 2A regulatory subunit A and related proteins [Signal transduction mechanisms]
Probab=81.22 E-value=15 Score=44.33 Aligned_cols=216 Identities=14% Similarity=0.136 Sum_probs=131.8
Q ss_pred HHHhCCCHHHHHHhhCCCCHHHHHHHHHHHHHhhC--CchhHHHHHHcCCHHHHHHHHccCCCHHHHHHHHHHHHHhhcC
Q 006114 402 KICDEVGLPKILQLLTSEDPDVQIHAVKVVANLAA--EDINQEKIVEEGGLDALLLLLRTSQNTTILRVASGAIANLAMN 479 (660)
Q Consensus 402 ~I~e~ggI~~LV~LL~s~d~~vr~~Aa~aL~nLa~--~~en~~~Ive~GgI~~Lv~LL~~s~d~~v~~~Aa~AL~nLA~~ 479 (660)
.....+.+|.++.+...+...||..|...+.++.. .... =....+.+.++.... +.+..++...+.....+...
T Consensus 271 ~~~~s~v~~~~~~L~~DdqdsVr~~a~~~~~~l~~l~~~~~---d~~~~~~~~l~~~~~-d~~~~v~~~~~~~~~~L~~~ 346 (759)
T KOG0211|consen 271 EIVKSEVLPTLIQLLRDDQDSVREAAVESLVSLLDLLDDDD---DVVKSLTESLVQAVE-DGSWRVSYMVADKFSELSSA 346 (759)
T ss_pred HHHHhhccHHHhhhhhcchhhHHHHHHHHHHHHHHhcCCch---hhhhhhhHHHHHHhc-ChhHHHHHHHhhhhhhHHHH
Confidence 34556678888888888888999888888887766 2221 122235777888776 56666666666555555322
Q ss_pred chhHHHHHhcCccHHHHHhhcCCCCHHHHHHHHHHHHHHh--cChhHHHHHHhccHHHHHHHHhcCCCHHHHHHHHHHHH
Q 006114 480 EMNQGLIMSRGGGQLLAKTASKTDDPQTLRMVAGALANLC--GNEKLHTMLEEDGAIKALLAMVRSGNIDVIAQVARGLA 557 (660)
Q Consensus 480 ~~n~~~Ive~g~I~~Ll~LL~~s~d~~v~~~Aa~aLanLa--~~~~~r~~iv~~G~V~~Lv~lL~s~~~~v~~~Al~aLa 557 (660)
.-.......-+++.+.++++ ..-.++..++.-..-++ .+.+.+..+.....+|.+-.++.+.+..++...+..+.
T Consensus 347 --~~~~~~~~~~~~~~~~l~~~-~~~e~r~a~a~~~~~l~~~l~~~~~~~i~~~~ilp~~~~lv~d~~~~vr~a~a~~~~ 423 (759)
T KOG0211|consen 347 --VGPSATRTQLVPPVSNLLKD-EEWEVRYAIAKKVQKLACYLNASCYPNIPDSSILPEVQVLVLDNALHVRSALASVIT 423 (759)
T ss_pred --hccccCcccchhhHHHHhcc-hhhhhhHHhhcchHHHhhhcCcccccccchhhhhHHHHHHHhcccchHHHHHhcccc
Confidence 00012222346677777754 33355555554444444 44444555666667888888888888888888777776
Q ss_pred HhhccchhhhhhcchhhhHHHhhcChHHHHHHhhcCCCHHHHHHHHHHHHHhhc-CCccHHHHHhcCcHHHHHHHHhcC
Q 006114 558 NFAKCESRAIVQGQRKGRSHLMEDSALEWLIANSKTNSASTRRHVELALCHLAQ-NEDNARDFISRGGAKELVQISIES 635 (660)
Q Consensus 558 nLA~~~~~~~aq~~~e~r~~Li~~G~v~~Lv~lL~s~d~~vr~~Aa~AL~nLa~-~~e~~~~Ive~G~l~~Lv~lL~s~ 635 (660)
+++---+ ..=.-.-..|.++..+++.++.|+.+..+.+..+-. ........+....+|.+..+....
T Consensus 424 ~~~p~~~-----------k~~ti~~llp~~~~~l~de~~~V~lnli~~ls~~~~v~~v~g~~~~s~slLp~i~el~~d~ 491 (759)
T KOG0211|consen 424 GLSPILP-----------KERTISELLPLLIGNLKDEDPIVRLNLIDKLSLLEEVNDVIGISTVSNSLLPAIVELAEDL 491 (759)
T ss_pred ccCccCC-----------cCcCccccChhhhhhcchhhHHHHHhhHHHHHHHHhccCcccchhhhhhhhhhhhhhccch
Confidence 6642110 000112345666677888889999998887766533 223334455566667777766554
No 364
>PF06008 Laminin_I: Laminin Domain I; InterPro: IPR009254 Laminins are glycoproteins that are major constituents of the basement membrane of cells. Laminins are trimeric molecules; laminin-1 is an alpha1 beta1 gamma1 trimer. It has been suggested that the domains I and II from laminin A, B1 and B2 may come together to form a triple helical coiled-coil structure []. Binding to cells via a high affinity receptor, laminin is thought to mediate the attachment, migration and organisation of cells into tissues during embryonic development by interacting with other extracellular matrix components.; GO: 0005102 receptor binding, 0030155 regulation of cell adhesion, 0030334 regulation of cell migration, 0045995 regulation of embryonic development, 0005606 laminin-1 complex
Probab=81.04 E-value=75 Score=33.17 Aligned_cols=148 Identities=22% Similarity=0.242 Sum_probs=78.0
Q ss_pred hhhHHHHhhhhHHHHHHHHHhhhhhhhhhhhhHHHHHHHHHHHhhhhhhhhhhhhhhHHHHHHhhHHHHHHHHHHHHHHH
Q 006114 111 RSEFLEKENAHLELEVEKILGELNHQKDQNNLKREKIVQLEISLKNSKQQQLDNSSYQKVLADTTQMYEKKITELIKQLE 190 (660)
Q Consensus 111 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~ 190 (660)
+..-++++...|..+++.|....+.-.....-........ ..+.++|...+......|.++..++.
T Consensus 46 ~~~~~e~~l~~L~~d~~~L~~k~~~~~~~~~~l~~~t~~t--------------~~~a~~L~~~i~~l~~~i~~l~~~~~ 111 (264)
T PF06008_consen 46 QLDPLEKELESLEQDVENLQEKATKVSRKAQQLNNNTERT--------------LQRAQDLEQFIQNLQDNIQELIEQVE 111 (264)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--------------HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344555666666666666665544333322221111111 33444556666666666666666653
Q ss_pred HHHhhhhchHHHHHHHHHHHhhhhhhHHHHhhhhhHHHHHHhhHHHHHHHHHHHHhhhhhhhhhhhhhhHHhHHHHHHHh
Q 006114 191 IEHARSEGAEEQVDTMKKLISDNQKSIEQYEMENSTYQKALADTTQLYEKKIAELNKKLEDEHACFEGAVEQLDMVKKLL 270 (660)
Q Consensus 191 ~e~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 270 (660)
.=-. . ....-+.++.+++++...|- .++.++ |=-.....|+.+++.+..||
T Consensus 112 ~l~~----------------~-------~~~~~~~~l~~~l~ea~~mL----~emr~r--~f~~~~~~Ae~El~~A~~LL 162 (264)
T PF06008_consen 112 SLNE----------------N-------GDQLPSEDLQRALAEAQRML----EEMRKR--DFTPQRQNAEDELKEAEDLL 162 (264)
T ss_pred HhCc----------------c-------cCCCCHHHHHHHHHHHHHHH----HHHHhc--cchhHHHHHHHHHHHHHHHH
Confidence 2221 0 01133344444444333221 223222 23344556788999999999
Q ss_pred hhhhccc-cchhHHHHHHHHHHHHHHHHHhHH
Q 006114 271 SDYQNSN-QGQKEVHELCVKLKETRQLHESAV 301 (660)
Q Consensus 271 ~~~~~~~-~~~~e~~~Lk~~Le~e~~~~e~~e 301 (660)
+..+... ....+...|...+.+....|...-
T Consensus 163 ~~v~~~~~~~~~~~~~l~~~i~~~L~~~~~kL 194 (264)
T PF06008_consen 163 SRVQKWFQKPQQENESLAEAIRDDLNDYNAKL 194 (264)
T ss_pred HHHHHHHhhHHHhhHHHHHHHHHHHHHHHHHH
Confidence 9888874 444555677777777777776665
No 365
>KOG0211 consensus Protein phosphatase 2A regulatory subunit A and related proteins [Signal transduction mechanisms]
Probab=81.01 E-value=31 Score=41.63 Aligned_cols=213 Identities=13% Similarity=0.079 Sum_probs=129.7
Q ss_pred HHHHHHHHHHHhhCCchhHHHHHHcCCHHHHHHHHccCCCHHHHHHHHHHHHHhhcCchhHHHHHhcCccHHHHHhhcCC
Q 006114 423 VQIHAVKVVANLAAEDINQEKIVEEGGLDALLLLLRTSQNTTILRVASGAIANLAMNEMNQGLIMSRGGGQLLAKTASKT 502 (660)
Q Consensus 423 vr~~Aa~aL~nLa~~~en~~~Ive~GgI~~Lv~LL~~s~d~~v~~~Aa~AL~nLA~~~~n~~~Ive~g~I~~Ll~LL~~s 502 (660)
.+..||++.+.++..-.. ..|.. -+.++..-|..+.++.++..++.-+++++..-.. .++..+.++.+..+..+.
T Consensus 214 sr~sacglf~~~~~~~~~-~~vk~--elr~~~~~lc~d~~~~Vr~~~a~~l~~~a~~~~~--~~~~s~v~~~~~~L~~Dd 288 (759)
T KOG0211|consen 214 SRLSACGLFGKLYVSLPD-DAVKR--ELRPIVQSLCQDDTPMVRRAVASNLGNIAKVLES--EIVKSEVLPTLIQLLRDD 288 (759)
T ss_pred cchhhhhhhHHhccCCCh-HHHHH--HHHHHHHhhccccchhhHHHHHhhhHHHHHHHHH--HHHHhhccHHHhhhhhcc
Confidence 345566666655552211 11211 1445555555577889999999999998766332 777788899999998764
Q ss_pred CCHHHHHHHHHHHHHHh--cChhHHHHHHhccHHHHHHHHhcCCCHHHHHHHHHHHHHhhccchhhhhhcchhhhHHHhh
Q 006114 503 DDPQTLRMVAGALANLC--GNEKLHTMLEEDGAIKALLAMVRSGNIDVIAQVARGLANFAKCESRAIVQGQRKGRSHLME 580 (660)
Q Consensus 503 ~d~~v~~~Aa~aLanLa--~~~~~r~~iv~~G~V~~Lv~lL~s~~~~v~~~Al~aLanLA~~~~~~~aq~~~e~r~~Li~ 580 (660)
. ..|+..|.-++.++. .+++. =+..-+.+.++.....++-.++........-++.. .+. ....
T Consensus 289 q-dsVr~~a~~~~~~l~~l~~~~~---d~~~~~~~~l~~~~~d~~~~v~~~~~~~~~~L~~~----------~~~-~~~~ 353 (759)
T KOG0211|consen 289 Q-DSVREAAVESLVSLLDLLDDDD---DVVKSLTESLVQAVEDGSWRVSYMVADKFSELSSA----------VGP-SATR 353 (759)
T ss_pred h-hhHHHHHHHHHHHHHHhcCCch---hhhhhhhHHHHHHhcChhHHHHHHHhhhhhhHHHH----------hcc-ccCc
Confidence 3 467777776666665 22221 12234567777777777766666555554444321 011 1222
Q ss_pred cChHHHHHHhhcCCCHHHHHHHHHHHHHhhcC--CccHHHHHhcCcHHHHHHHHhcCChHHHHHHHHHHHhcCcchh
Q 006114 581 DSALEWLIANSKTNSASTRRHVELALCHLAQN--EDNARDFISRGGAKELVQISIESSREDIRNLAKKTMKSNPRLQ 655 (660)
Q Consensus 581 ~G~v~~Lv~lL~s~d~~vr~~Aa~AL~nLa~~--~e~~~~Ive~G~l~~Lv~lL~s~s~~~ir~~A~~~L~~~p~~~ 655 (660)
.--+++...++++....++..++.-...++.. ......+....++|.+..+..+.+..+-...|...+...|.+.
T Consensus 354 ~~~~~~~~~l~~~~~~e~r~a~a~~~~~l~~~l~~~~~~~i~~~~ilp~~~~lv~d~~~~vr~a~a~~~~~~~p~~~ 430 (759)
T KOG0211|consen 354 TQLVPPVSNLLKDEEWEVRYAIAKKVQKLACYLNASCYPNIPDSSILPEVQVLVLDNALHVRSALASVITGLSPILP 430 (759)
T ss_pred ccchhhHHHHhcchhhhhhHHhhcchHHHhhhcCcccccccchhhhhHHHHHHHhcccchHHHHHhccccccCccCC
Confidence 33466777777777777777777666666553 2455666666678888888877666666666666666655543
No 366
>PF10498 IFT57: Intra-flagellar transport protein 57 ; InterPro: IPR019530 Eukaryotic cilia and flagella are specialised organelles found at the periphery of cells of diverse organisms. Intra-flagellar transport (IFT) is required for the assembly and maintenance of eukaryotic cilia and flagella, and consists of the bi-directional movement of large protein particles between the base and the distal tip of the organelle. IFT particles contain multiple copies of two distinct protein complexes, A and B, which contain at least 6 and 11 protein subunits. IFT57 is part of complex B but is not, however, required for the core subunits to stay associated []. This protein is known as Huntington-interacting protein-1 in humans.
Probab=81.00 E-value=56 Score=36.02 Aligned_cols=99 Identities=16% Similarity=0.150 Sum_probs=56.5
Q ss_pred HHHHhhHHHHHHHHHHHHHHHHHHhhhhchHHHHHHHHHHHhhhhhhHHHHhhhhhHHHHHHhhHHHHHHHHHHHHhhhh
Q 006114 170 VLADTTQMYEKKITELIKQLEIEHARSEGAEEQVDTMKKLISDNQKSIEQYEMENSTYQKALADTTQLYEKKIAELNKKL 249 (660)
Q Consensus 170 ~~~~~~~~~~~~~~~l~~~l~~e~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~ 249 (660)
++.++.-..+..=+-|..+|+.-...+..+.++++..+....... -..+..+..|+
T Consensus 249 ~i~~~lekI~sREk~iN~qle~l~~eYr~~~~~ls~~~~~y~~~s-------~~V~~~t~~L~----------------- 304 (359)
T PF10498_consen 249 DISKTLEKIESREKYINNQLEPLIQEYRSAQDELSEVQEKYKQAS-------EGVSERTRELA----------------- 304 (359)
T ss_pred HHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHh-------hHHHHHHHHHH-----------------
Confidence 333333334444444555665555555555554444444444333 45555555555
Q ss_pred hhhhhhhhhhHHhHHHHHHHhhhhhccccchhHHHHHHHHHHHHHHHHHhH
Q 006114 250 EDEHACFEGAVEQLDMVKKLLSDYQNSNQGQKEVHELCVKLKETRQLHESA 300 (660)
Q Consensus 250 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~Lk~~Le~e~~~~e~~ 300 (660)
..-++|..+|+-+-+...++.+..=+..+|..+.+..++....
T Consensus 305 --------~IseeLe~vK~emeerg~~mtD~sPlv~IKqAl~kLk~EI~qM 347 (359)
T PF10498_consen 305 --------EISEELEQVKQEMEERGSSMTDGSPLVKIKQALTKLKQEIKQM 347 (359)
T ss_pred --------HHHHHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHHHHHHh
Confidence 3445666777777777778888777777777776655554443
No 367
>PRK10869 recombination and repair protein; Provisional
Probab=80.90 E-value=1.2e+02 Score=35.42 Aligned_cols=86 Identities=16% Similarity=0.160 Sum_probs=64.6
Q ss_pred hhhhhhhhhhhhHHhHHHHHHHhhhhhccccchhHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHhhhhccHHHHH
Q 006114 248 KLEDEHACFEGAVEQLDMVKKLLSDYQNSNQGQKEVHELCVKLKETRQLHESAVYEVQTLKSEYKNLLEEKETMSDELQA 327 (660)
Q Consensus 248 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~Lk~~Le~e~~~~e~~e~E~~~lks~l~~l~~~~~~~~eel~~ 327 (660)
.++-.-.|++..++.|+.+++|-..|- .+-+++...+..++.+....+..+..+..|+.++..+...-...-..+..
T Consensus 290 ~~~~dp~~l~~ie~Rl~~l~~L~rKyg---~~~~~~~~~~~~l~~eL~~L~~~e~~l~~Le~e~~~l~~~l~~~A~~LS~ 366 (553)
T PRK10869 290 RLDLDPNRLAELEQRLSKQISLARKHH---VSPEELPQHHQQLLEEQQQLDDQEDDLETLALAVEKHHQQALETAQKLHQ 366 (553)
T ss_pred hcCCCHHHHHHHHHHHHHHHHHHHHhC---CCHHHHHHHHHHHHHHHHHhhCCHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345566788999999999999988776 47888999999999999999999988888888888766644444444555
Q ss_pred HHHHHHHHH
Q 006114 328 ARQRLLVEE 336 (660)
Q Consensus 328 ~~k~l~~e~ 336 (660)
.|+..-..+
T Consensus 367 ~R~~aA~~l 375 (553)
T PRK10869 367 SRQRYAKEL 375 (553)
T ss_pred HHHHHHHHH
Confidence 444433333
No 368
>KOG1967 consensus DNA repair/transcription protein Mms19 [Replication, recombination and repair; Transcription]
Probab=80.60 E-value=6.2 Score=47.52 Aligned_cols=149 Identities=12% Similarity=0.015 Sum_probs=101.2
Q ss_pred CCHHHHHHhhCCCCHHHHHHHHHHHHHhhCCchhHHHHHH-cCCHHHHHHHHccCCCHHHHHHHHHHHHHhhcC-chhHH
Q 006114 407 VGLPKILQLLTSEDPDVQIHAVKVVANLAAEDINQEKIVE-EGGLDALLLLLRTSQNTTILRVASGAIANLAMN-EMNQG 484 (660)
Q Consensus 407 ggI~~LV~LL~s~d~~vr~~Aa~aL~nLa~~~en~~~Ive-~GgI~~Lv~LL~~s~d~~v~~~Aa~AL~nLA~~-~~n~~ 484 (660)
..+|.|++.....+...+..=..+|.++-.+-.-...+-+ ..-.|.|+..|. -+|+.++..+..+|--+... +....
T Consensus 867 ~ivP~l~~~~~t~~~~~K~~yl~~LshVl~~vP~~vllp~~~~LlPLLLq~Ls-~~D~~v~vstl~~i~~~l~~~~tL~t 945 (1030)
T KOG1967|consen 867 DIVPILVSKFETAPGSQKHNYLEALSHVLTNVPKQVLLPQFPMLLPLLLQALS-MPDVIVRVSTLRTIPMLLTESETLQT 945 (1030)
T ss_pred hhHHHHHHHhccCCccchhHHHHHHHHHHhcCCHHhhccchhhHHHHHHHhcC-CCccchhhhHhhhhhHHHHhccccch
Confidence 5789999888877777777778888887664333222222 224777888886 78999988888888766433 22222
Q ss_pred HHHhcCccHHHHHhhcCCCC--HHHHHHHHHHHHHHhc-ChhHHHHHHhccHHHHHHHHhcCCCHHHHHHHHHHHH
Q 006114 485 LIMSRGGGQLLAKTASKTDD--PQTLRMVAGALANLCG-NEKLHTMLEEDGAIKALLAMVRSGNIDVIAQVARGLA 557 (660)
Q Consensus 485 ~Ive~g~I~~Ll~LL~~s~d--~~v~~~Aa~aLanLa~-~~~~r~~iv~~G~V~~Lv~lL~s~~~~v~~~Al~aLa 557 (660)
.=+ .-.||.++.+-+++.+ ..|+..|..+|..|.. -|...-.--...++.+|+..|+.+-.-|+..|+.+=.
T Consensus 946 ~~~-~Tlvp~lLsls~~~~n~~~~VR~~ALqcL~aL~~~~P~~~l~~fr~~Vl~al~k~LdDkKRlVR~eAv~tR~ 1020 (1030)
T KOG1967|consen 946 EHL-STLVPYLLSLSSDNDNNMMVVREDALQCLNALTRRLPTKSLLSFRPLVLRALIKILDDKKRLVRKEAVDTRQ 1020 (1030)
T ss_pred HHH-hHHHHHHHhcCCCCCcchhHHHHHHHHHHHHHhccCCCcccccccHHHHHHhhhccCcHHHHHHHHHHHHhh
Confidence 111 2257888887665443 5677778899998885 5555544555678888888888877778888876643
No 369
>PF15619 Lebercilin: Ciliary protein causing Leber congenital amaurosis disease
Probab=80.25 E-value=69 Score=32.23 Aligned_cols=131 Identities=18% Similarity=0.256 Sum_probs=59.8
Q ss_pred HHHHhhHHHHHHHHHHHHHHHHHHhhhhchHHHHHHHHHHHhhhhhhHHHHhhhhhHHHHHHhhHHHHHHHHHHHHhhhh
Q 006114 170 VLADTTQMYEKKITELIKQLEIEHARSEGAEEQVDTMKKLISDNQKSIEQYEMENSTYQKALADTTQLYEKKIAELNKKL 249 (660)
Q Consensus 170 ~~~~~~~~~~~~~~~l~~~l~~e~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~ 249 (660)
++..-++.++.+|.-|+.+|-.-......++-.+......+-..+..++.++. -+.-+-|++ ......+++.+...+
T Consensus 58 ~Lpqll~~h~eEvr~Lr~~LR~~q~~~r~~~~klk~~~~el~k~~~~l~~L~~--L~~dknL~e-ReeL~~kL~~~~~~l 134 (194)
T PF15619_consen 58 ELPQLLQRHNEEVRVLRERLRKSQEQERELERKLKDKDEELLKTKDELKHLKK--LSEDKNLAE-REELQRKLSQLEQKL 134 (194)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHcCCchh-HHHHHHHHHHHHHHH
Confidence 66666777777777777777666655555554444333333333322211100 111122222 233344444455555
Q ss_pred hhhhhhhhhhHHhHHHHHHHhhhhhccccchhHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHH
Q 006114 250 EDEHACFEGAVEQLDMVKKLLSDYQNSNQGQKEVHELCVKLKETRQLHESAVYEVQTLKSEYK 312 (660)
Q Consensus 250 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~Lk~~Le~e~~~~e~~e~E~~~lks~l~ 312 (660)
++.-.+...++.++....+-++ -++....+...........+..|+..|++.+.
T Consensus 135 ~~~~~ki~~Lek~leL~~k~~~---------rql~~e~kK~~~~~~~~~~l~~ei~~L~~klk 188 (194)
T PF15619_consen 135 QEKEKKIQELEKQLELENKSFR---------RQLASEKKKHKEAQEEVKSLQEEIQRLNQKLK 188 (194)
T ss_pred HHHHHHHHHHHHHHHHHhhHHH---------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5444444445555444443322 12233333333334444444555555554443
No 370
>COG4477 EzrA Negative regulator of septation ring formation [Cell division and chromosome partitioning]
Probab=80.01 E-value=1.2e+02 Score=34.94 Aligned_cols=197 Identities=18% Similarity=0.246 Sum_probs=106.0
Q ss_pred HHHHHhhHHHHHHhhhhhhhHHHHhhhhH-----HHHHHHHHhhhhhhhhhhhhHHHHHHHHHHHhhhhhhhhhhhhhhH
Q 006114 94 LRESQISYDESMRNLVTRSEFLEKENAHL-----ELEVEKILGELNHQKDQNNLKREKIVQLEISLKNSKQQQLDNSSYQ 168 (660)
Q Consensus 94 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 168 (660)
+++|+..+-+.|-+|++=|.-|..++=+| ..+|.+|...+. .++..+.+| -+|
T Consensus 220 ~~e~~~~lP~ql~~Lk~Gyr~m~~~gY~l~~~~id~~~~~L~~~l~-------~~~~~l~~L----------eld----- 277 (570)
T COG4477 220 LAELQTELPGQLQDLKAGYRDMKEEGYHLEHVNIDSRLERLKEQLV-------ENSELLTQL----------ELD----- 277 (570)
T ss_pred HHHHHhhchHHHHHHHHHHHHHHHccCCcccccHHHHHHHHHHHHH-------HHHhHHHHh----------hhh-----
Confidence 56666666666667777766666665544 444555444432 222222222 222
Q ss_pred HHHHHhhHHHHHHHHHHHHHHHHHHhhhhchHHHHHHHHHHHhhhhhhHHHHhhhhhHHHHHHhhHHHHHHHHHHHHhhh
Q 006114 169 KVLADTTQMYEKKITELIKQLEIEHARSEGAEEQVDTMKKLISDNQKSIEQYEMENSTYQKALADTTQLYEKKIAELNKK 248 (660)
Q Consensus 169 ~~~~~~~~~~~~~~~~l~~~l~~e~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~ 248 (660)
-+...+.-...+|..|=-.||.|..-+...+.-...|..-|...+ -.|......++..++.|-=-
T Consensus 278 -~aeeel~~I~e~ie~lYd~lE~EveA~~~V~~~~~~l~~~l~k~k-------e~n~~L~~Eie~V~~sY~l~------- 342 (570)
T COG4477 278 -EAEEELGLIQEKIESLYDLLEREVEAKNVVEENLPILPDYLEKAK-------ENNEHLKEEIERVKESYRLA------- 342 (570)
T ss_pred -hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcchHHHHHHHH-------HHHHHHHHHHHHHHHHhccC-------
Confidence 345667777788888888898888777666666666666555555 56666666666666665211
Q ss_pred hhhhhhhhhhhHHhHHHHHHHhhhhhccccchhH-HHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHhhhhccHHHHH
Q 006114 249 LEDEHACFEGAVEQLDMVKKLLSDYQNSNQGQKE-VHELCVKLKETRQLHESAVYEVQTLKSEYKNLLEEKETMSDELQA 327 (660)
Q Consensus 249 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e-~~~Lk~~Le~e~~~~e~~e~E~~~lks~l~~l~~~~~~~~eel~~ 327 (660)
|+|.+-.-+.+..|+.+...+++--..+....- -+.++..|+.-...-+.-+.+-..++..|..|...+....+.+.+
T Consensus 343 -e~e~~~vr~~e~eL~el~~~~~~i~~~~~~~~~~yS~lq~~l~~~~~~l~~i~~~q~~~~e~L~~LrkdEl~Are~l~~ 421 (570)
T COG4477 343 -ETELGSVRKFEKELKELESVLDEILENIEAQEVAYSELQDNLEEIEKALTDIEDEQEKVQEHLTSLRKDELEARENLER 421 (570)
T ss_pred -hhHHHHHHHHHHHHHHHHHHHHHHHHHhhcccccHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 222222333333333333333333222222221 155555555555555555555555556666665554444334444
Q ss_pred H
Q 006114 328 A 328 (660)
Q Consensus 328 ~ 328 (660)
+
T Consensus 422 ~ 422 (570)
T COG4477 422 L 422 (570)
T ss_pred H
Confidence 3
No 371
>PF11865 DUF3385: Domain of unknown function (DUF3385); InterPro: IPR024585 This uncharacterised domain is is typically between 160 to 172 amino acids in length. It is found in the phosphatidylinositol kinase-related protein kinases TOR (target of rapamycin). In Saccharomyces cerevisiae the TOR proteins, TOR1 and TOR2, regulate growth in a rapamycin-sensitive manner [].
Probab=79.95 E-value=13 Score=36.15 Aligned_cols=32 Identities=34% Similarity=0.374 Sum_probs=23.8
Q ss_pred HHHHHHHHccCCCHHHHHHHHHHHHHhhcCch
Q 006114 450 LDALLLLLRTSQNTTILRVASGAIANLAMNEM 481 (660)
Q Consensus 450 I~~Lv~LL~~s~d~~v~~~Aa~AL~nLA~~~~ 481 (660)
++.|+++|++..+..+|+.|.++|+.|-.-++
T Consensus 12 L~~L~~iLk~e~s~~iR~E~lr~lGilGALDP 43 (160)
T PF11865_consen 12 LDILLNILKTEQSQSIRREALRVLGILGALDP 43 (160)
T ss_pred HHHHHHHHHhCCCHHHHHHHHHHhhhccccCc
Confidence 56677778777778888888888888854433
No 372
>PF11559 ADIP: Afadin- and alpha -actinin-Binding; InterPro: IPR021622 This family is found in mammals where it is localised at cell-cell adherens junctions [], and in Sch. pombe and other fungi where it anchors spindle-pole bodies to spindle microtubules []. It is a coiled-coil structure, and in pombe, it is required for anchoring the minus end of spindle microtubules to the centrosome equivalent, the spindle-pole body. The name ADIP derives from the family being composed of Afadin- and alpha -Actinin-Binding Proteins Localised at Cell-Cell Adherens Junctions.
Probab=79.86 E-value=57 Score=31.03 Aligned_cols=33 Identities=18% Similarity=0.312 Sum_probs=18.1
Q ss_pred hhHHHHHHHHHHHHH----HHHHhHHHHHHHHHHHHH
Q 006114 280 QKEVHELCVKLKETR----QLHESAVYEVQTLKSEYK 312 (660)
Q Consensus 280 ~~e~~~Lk~~Le~e~----~~~e~~e~E~~~lks~l~ 312 (660)
.+|+.+++..++... +...+.+.|+..||.+|.
T Consensus 114 kee~~klk~~~~~~~tq~~~e~rkke~E~~kLk~rL~ 150 (151)
T PF11559_consen 114 KEELQKLKNQLQQRKTQYEHELRKKEREIEKLKERLN 150 (151)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 344444444444433 334566777777777664
No 373
>PF14662 CCDC155: Coiled-coil region of CCDC155
Probab=79.49 E-value=72 Score=32.00 Aligned_cols=20 Identities=30% Similarity=0.195 Sum_probs=8.4
Q ss_pred hhHHHHhhhhHHHHHHHHHh
Q 006114 112 SEFLEKENAHLELEVEKILG 131 (660)
Q Consensus 112 ~~~~~~~~~~~~~~~~~~~~ 131 (660)
.+-|+--|++|..|+..|.-
T Consensus 10 v~dL~~~n~~L~~en~kL~~ 29 (193)
T PF14662_consen 10 VEDLQLNNQKLADENAKLQR 29 (193)
T ss_pred HHHHHHHhHHHHHHHHHHHH
Confidence 33344444444444444433
No 374
>KOG1020 consensus Sister chromatid cohesion protein SCC2/Nipped-B [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning; Replication, recombination and repair]
Probab=79.47 E-value=29 Score=44.26 Aligned_cols=111 Identities=12% Similarity=0.132 Sum_probs=59.7
Q ss_pred HHHHHhhcCCCCHHHHHHHHHHHHHHhc-ChhHHHHHHhccHHHHHHHHhcCCCHHHHHHHHHHHHHhhccchhhhhhcc
Q 006114 493 QLLAKTASKTDDPQTLRMVAGALANLCG-NEKLHTMLEEDGAIKALLAMVRSGNIDVIAQVARGLANFAKCESRAIVQGQ 571 (660)
Q Consensus 493 ~~Ll~LL~~s~d~~v~~~Aa~aLanLa~-~~~~r~~iv~~G~V~~Lv~lL~s~~~~v~~~Al~aLanLA~~~~~~~aq~~ 571 (660)
..++.+|. .+.+.++.-|..||.++.. +|.. +....+-..+-+-+......|+..|+-.+|.+..+.++.+.+
T Consensus 819 k~Il~~l~-e~~ialRtkAlKclS~ive~Dp~v---L~~~dvq~~Vh~R~~DssasVREAaldLvGrfvl~~~e~~~q-- 892 (1692)
T KOG1020|consen 819 KLILSVLG-ENAIALRTKALKCLSMIVEADPSV---LSRPDVQEAVHGRLNDSSASVREAALDLVGRFVLSIPELIFQ-- 892 (1692)
T ss_pred HHHHHHhc-CchHHHHHHHHHHHHHHHhcChHh---hcCHHHHHHHHHhhccchhHHHHHHHHHHhhhhhccHHHHHH--
Confidence 33444443 2445556666666666652 2211 111122222333344455566666666666655554433322
Q ss_pred hhhhHHHhhcChHHHHHHhhcCCCHHHHHHHHHHHHHhhcCCccHHHHH
Q 006114 572 RKGRSHLMEDSALEWLIANSKTNSASTRRHVELALCHLAQNEDNARDFI 620 (660)
Q Consensus 572 ~e~r~~Li~~G~v~~Lv~lL~s~d~~vr~~Aa~AL~nLa~~~e~~~~Iv 620 (660)
....+..-..+..-.||.+|...++.+|...++-..++
T Consensus 893 -----------yY~~i~erIlDtgvsVRKRvIKIlrdic~e~pdf~~i~ 930 (1692)
T KOG1020|consen 893 -----------YYDQIIERILDTGVSVRKRVIKILRDICEETPDFSKIV 930 (1692)
T ss_pred -----------HHHHHHhhcCCCchhHHHHHHHHHHHHHHhCCChhhHH
Confidence 23345555666778999999999999998665544433
No 375
>smart00638 LPD_N Lipoprotein N-terminal Domain.
Probab=79.34 E-value=23 Score=41.06 Aligned_cols=135 Identities=19% Similarity=0.121 Sum_probs=81.6
Q ss_pred CHHHHHHHHccC---CCHHHHHHHHHHHHHhhc----CchhHHHHHhcCccHHHHHhhcC---CCCHHHHHHHHHHHHHH
Q 006114 449 GLDALLLLLRTS---QNTTILRVASGAIANLAM----NEMNQGLIMSRGGGQLLAKTASK---TDDPQTLRMVAGALANL 518 (660)
Q Consensus 449 gI~~Lv~LL~~s---~d~~v~~~Aa~AL~nLA~----~~~n~~~Ive~g~I~~Ll~LL~~---s~d~~v~~~Aa~aLanL 518 (660)
.+..+..++... ..+.++..|..++++++. +.+.....+....++.+...|.. ..+......+..+|+|+
T Consensus 394 ~l~~l~~l~~~~~~~~~~~l~~sa~l~~~~lv~~~c~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~LkaLGN~ 473 (574)
T smart00638 394 ILKALFELAESPEVQKQPYLRESALLAYGSLVRRYCVNTPSCPDFVLEELLKYLHELLQQAVSKGDEEEIQLYLKALGNA 473 (574)
T ss_pred HHHHHHHHhcCccccccHHHHHHHHHHHHHHHHHHhcCCCCCChhhHHHHHHHHHHHHHHHHhcCCchheeeHHHhhhcc
Confidence 356666666532 355677777777777754 22221112223356666665543 24555566677888887
Q ss_pred hcChhHHHHHHhccHHHHHHHHhc---CCCHHHHHHHHHHHHHhhccchhhhhhcchhhhHHHhhcChHHHHHHhhcC--
Q 006114 519 CGNEKLHTMLEEDGAIKALLAMVR---SGNIDVIAQVARGLANFAKCESRAIVQGQRKGRSHLMEDSALEWLIANSKT-- 593 (660)
Q Consensus 519 a~~~~~r~~iv~~G~V~~Lv~lL~---s~~~~v~~~Al~aLanLA~~~~~~~aq~~~e~r~~Li~~G~v~~Lv~lL~s-- 593 (660)
..- ..++.+..++. ...+.++..|+.+|..++...++ .+.+.++++..+
T Consensus 474 g~~----------~~i~~l~~~l~~~~~~~~~iR~~Av~Alr~~a~~~p~----------------~v~~~l~~i~~n~~ 527 (574)
T smart00638 474 GHP----------SSIKVLEPYLEGAEPLSTFIRLAAILALRNLAKRDPR----------------KVQEVLLPIYLNRA 527 (574)
T ss_pred CCh----------hHHHHHHHhcCCCCCCCHHHHHHHHHHHHHHHHhCch----------------HHHHHHHHHHcCCC
Confidence 642 24455555555 33568999999999998854432 234556666655
Q ss_pred CCHHHHHHHHHHHHHh
Q 006114 594 NSASTRRHVELALCHL 609 (660)
Q Consensus 594 ~d~~vr~~Aa~AL~nL 609 (660)
.++.+|.+|..+|+.+
T Consensus 528 e~~EvRiaA~~~lm~t 543 (574)
T smart00638 528 EPPEVRMAAVLVLMET 543 (574)
T ss_pred CChHHHHHHHHHHHhc
Confidence 4678998888877654
No 376
>TIGR00634 recN DNA repair protein RecN. All proteins in this family for which functions are known are ATP binding proteins involved in the initiation of recombination and recombinational repair.
Probab=79.00 E-value=1.4e+02 Score=34.93 Aligned_cols=66 Identities=14% Similarity=0.266 Sum_probs=37.5
Q ss_pred HHHHHhhhhchHHHHHHHHHHHhhhhhhHHHHhhhhhHHHHHHhhHHHHHHHHHHHHhhhhhhhhhhhh
Q 006114 189 LEIEHARSEGAEEQVDTMKKLISDNQKSIEQYEMENSTYQKALADTTQLYEKKIAELNKKLEDEHACFE 257 (660)
Q Consensus 189 l~~e~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~ 257 (660)
++.+.......++.+..|+..+..+++...+.-.+=+..++ .+...+++.+....+.|.-++++|.
T Consensus 334 l~~eL~~l~~~~~~le~L~~el~~l~~~l~~~a~~Ls~~R~---~~a~~l~~~v~~~l~~L~m~~~~f~ 399 (563)
T TIGR00634 334 IKEELDQLDDSDESLEALEEEVDKLEEELDKAAVALSLIRR---KAAERLAKRVEQELKALAMEKAEFT 399 (563)
T ss_pred HHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHhCCCCCcEEE
Confidence 33333444445555666666666666444333233333333 3346677888888888888888775
No 377
>PF08167 RIX1: rRNA processing/ribosome biogenesis
Probab=78.90 E-value=26 Score=34.00 Aligned_cols=110 Identities=17% Similarity=0.166 Sum_probs=69.6
Q ss_pred HHHHHHHHccCCCHHHHHHHHHHHHHhhcCchhHHHHHhcC--ccHHHHHhhcCCCCHHHHHHHHHHHHHHh----cChh
Q 006114 450 LDALLLLLRTSQNTTILRVASGAIANLAMNEMNQGLIMSRG--GGQLLAKTASKTDDPQTLRMVAGALANLC----GNEK 523 (660)
Q Consensus 450 I~~Lv~LL~~s~d~~v~~~Aa~AL~nLA~~~~n~~~Ive~g--~I~~Ll~LL~~s~d~~v~~~Aa~aLanLa----~~~~ 523 (660)
+..+..+|. +.++.-+-.++..+..++.... .+.+...| -+..|+.+|..+.++.+...++.+|..|. ..|+
T Consensus 27 ~~ri~~LL~-s~~~~~rw~G~~Ll~~~~~~~~-~e~l~~~~~~W~~~Ll~~L~~~~~~~~~~~ai~~L~~l~~~~~~~p~ 104 (165)
T PF08167_consen 27 VTRINSLLQ-SKSAYSRWAGLCLLKVTVEQCS-WEILLSHGSQWLRALLSILEKPDPPSVLEAAIITLTRLFDLIRGKPT 104 (165)
T ss_pred HHHHHHHhC-CCChhhHHHHHHHHHHHHHHhh-HHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHhcCCCc
Confidence 555677776 6667666666666665544311 34444543 36789999988778888888888888776 6677
Q ss_pred HHHHHHhc---cHHHHHHHHhcCCCHHHHHHHHHHHHHhhccc
Q 006114 524 LHTMLEED---GAIKALLAMVRSGNIDVIAQVARGLANFAKCE 563 (660)
Q Consensus 524 ~r~~iv~~---G~V~~Lv~lL~s~~~~v~~~Al~aLanLA~~~ 563 (660)
...++... +.+..++.++.. +.+...++.+|..+-...
T Consensus 105 l~Rei~tp~l~~~i~~ll~l~~~--~~~~~~~l~~L~~ll~~~ 145 (165)
T PF08167_consen 105 LTREIATPNLPKFIQSLLQLLQD--SSCPETALDALATLLPHH 145 (165)
T ss_pred hHHHHhhccHHHHHHHHHHHHhc--cccHHHHHHHHHHHHHHC
Confidence 66666543 344455555543 455566666666655443
No 378
>PRK09169 hypothetical protein; Validated
Probab=78.75 E-value=1.3e+02 Score=40.41 Aligned_cols=183 Identities=21% Similarity=0.077 Sum_probs=101.8
Q ss_pred cCCHHHHHHHHccCCCHHHHHHHHHHHHHh-hcCchhHHHHHhcCccHHHHHhhcCCCCHHHHHHHHHHHHHHh-cChhH
Q 006114 447 EGGLDALLLLLRTSQNTTILRVASGAIANL-AMNEMNQGLIMSRGGGQLLAKTASKTDDPQTLRMVAGALANLC-GNEKL 524 (660)
Q Consensus 447 ~GgI~~Lv~LL~~s~d~~v~~~Aa~AL~nL-A~~~~n~~~Ive~g~I~~Ll~LL~~s~d~~v~~~Aa~aLanLa-~~~~~ 524 (660)
.-.|..+++.|..-++......++..|+.. +..+..... ++.-.|..+++-|+..++....+.++..|+... .++..
T Consensus 162 ~~~v~~lLNalSKWP~~~~c~~aa~~lA~~la~~~~l~~a-l~~q~va~~lnalSKwp~~~~cr~a~~~lA~rL~~~~~l 240 (2316)
T PRK09169 162 AISFALLLNALSKWPDNTDCQTAAEQLADRLASDSRLLQA-MDAQEVANALNALSKWPDSPRCRNAAERLAERLADEPGL 240 (2316)
T ss_pred hHHHHHHHHHhccCCCchHHHHHHHHHHHHhccCHHHHHh-cchHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHhcChHH
Confidence 445888888887666555555555555544 444555544 444456677777777778788888888887655 55555
Q ss_pred HHHHHhccHHHHHHHHhc-CCCHHHHHHHHHHHHHhhccchhhhhhcchhhhHHHhhcChHHHHHHhhcCCCHH-HHHHH
Q 006114 525 HTMLEEDGAIKALLAMVR-SGNIDVIAQVARGLANFAKCESRAIVQGQRKGRSHLMEDSALEWLIANSKTNSAS-TRRHV 602 (660)
Q Consensus 525 r~~iv~~G~V~~Lv~lL~-s~~~~v~~~Al~aLanLA~~~~~~~aq~~~e~r~~Li~~G~v~~Lv~lL~s~d~~-vr~~A 602 (660)
+..|-. -.|..+++.+. =++.+.+..++.+|+....+++ ..+..+-..|+...|-.+.+-.+.. ++..+
T Consensus 241 ~~~l~~-q~va~~LNAlSKWp~~~~c~~aa~~lA~rla~~~--------~lr~~~~~Q~vAN~LNALSKwp~~~~cr~aa 311 (2316)
T PRK09169 241 LQSLRA-QEVALLLNALSKWPDDEACRQAAEALAARLAREP--------GLRLALDPQGVANALNALSKWPDTEACRQAA 311 (2316)
T ss_pred HHhcCH-HHHHHHHHHHhcCCCChHHHHHHHHHHHHHhcCh--------hhhhhcCHHHHHHHHHHHHhCCCchHHHHHH
Confidence 444333 34444555554 3555556666666655433332 2334444444444555555444433 44333
Q ss_pred HHHHHHhhcCCccHHHHHhcCcHHHHHHHHhcCChHH
Q 006114 603 ELALCHLAQNEDNARDFISRGGAKELVQISIESSRED 639 (660)
Q Consensus 603 a~AL~nLa~~~e~~~~Ive~G~l~~Lv~lL~s~s~~~ 639 (660)
...-..|+........|--.++...|-.+...++.+.
T Consensus 312 ~~LA~rL~~~~~l~~~~~aQ~vAN~LNALSKWp~~~~ 348 (2316)
T PRK09169 312 EALAERLAQERGLLQAMNAQAVANALNALSKWPDEEA 348 (2316)
T ss_pred HHHHHHHHhChhhhhhCCHHHHHHHHHHHhcCCCcHH
Confidence 3333345555555555555555566666666555443
No 379
>smart00787 Spc7 Spc7 kinetochore protein. This domain is found in cell division proteins which are required for kinetochore-spindle association.
Probab=78.65 E-value=72 Score=34.48 Aligned_cols=94 Identities=19% Similarity=0.227 Sum_probs=53.2
Q ss_pred hhhhHHHHHHHHHhhhhhhhhhhhhHHHHHHHHHHHhhhhhhhhhhhhhhHHHHHHhhHHHHHHHHHHHHHHHHHHhhhh
Q 006114 118 ENAHLELEVEKILGELNHQKDQNNLKREKIVQLEISLKNSKQQQLDNSSYQKVLADTTQMYEKKITELIKQLEIEHARSE 197 (660)
Q Consensus 118 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~e~~~~~ 197 (660)
.-..|..+-..|.+.++...+....++++.+.|..++.+.++..-+-..+-....+ .+-.+|++...+++.-.....
T Consensus 152 ~~~~l~~D~~~L~~~~~~l~~~~~~l~~~~~~L~~e~~~L~~~~~e~~~~d~~eL~---~lk~~l~~~~~ei~~~~~~l~ 228 (312)
T smart00787 152 NLEGLKEDYKLLMKELELLNSIKPKLRDRKDALEEELRQLKQLEDELEDCDPTELD---RAKEKLKKLLQEIMIKVKKLE 228 (312)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHhCCHHHHH---HHHHHHHHHHHHHHHHHHHHH
Confidence 33344444444555566666677778888888888888888887776554433222 222555555555555444444
Q ss_pred chHHHHHHHHHHHhhhh
Q 006114 198 GAEEQVDTMKKLISDNQ 214 (660)
Q Consensus 198 ~~~~~~~~l~~~l~~~~ 214 (660)
..++++..+...+.+..
T Consensus 229 e~~~~l~~l~~~I~~~~ 245 (312)
T smart00787 229 ELEEELQELESKIEDLT 245 (312)
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 44444444444444333
No 380
>PF08702 Fib_alpha: Fibrinogen alpha/beta chain family; InterPro: IPR012290 Fibrinogen plays key roles in both blood clotting and platelet aggregation. During blood clot formation, the conversion of soluble fibrinogen to insoluble fibrin is triggered by thrombin, resulting in the polymerisation of fibrin, which forms a soft clot; this is then converted to a hard clot by factor XIIIA, which cross-links fibrin molecules. Platelet aggregation involves the binding of the platelet protein receptor integrin alpha(IIb)-beta(3) to the C-terminal D domain of fibrinogen []. In addition to platelet aggregation, platelet-fibrinogen interaction mediates both adhesion and fibrin clot retraction. Fibrinogen occurs as a dimer, where each monomer is composed of three non-identical chains, alpha, beta and gamma, linked together by several disulphide bonds []. The N-terminals of all six chains come together to form the centre of the molecule (E domain), from which the monomers extend in opposite directions as coiled coils, followed by C-terminal globular domains (D domains). Therefore, the domain composition is: D-coil-E-coil-D. At each end, the C-terminal of the alpha chain extends beyond the D domain as a protuberance that is important for cross-linking the molecule. During clot formation, the N-terminal fragments of the alpha and beta chains (within the E domain) in fibrinogen are cleaved by thrombin, releasing fibrinopeptides A and B, respectively, and producing fibrin. This cleavage results in the exposure of four binding sites on the E domain, each of which can bind to a D domain from different fibrin molecules. The binding of fibrin molecules produces a polymer consisting of a lattice network of fibrins that form a long, branching, flexible fibre [, ]. Fibrin fibres interact with platelets to increase the size of the clot, as well as with several different proteins and cells, thereby promoting the inflammatory response and concentrating the cells required for wound repair at the site of damage. This entry represents the coiled-coil domain and part of the N-terminal E domain found in all three fibrinogen polypeptides, namely the alpha, beta and gamma chains. More information about these proteins can be found at Protein of the Month: Fibrinogen [].; GO: 0005102 receptor binding, 0030674 protein binding, bridging, 0007165 signal transduction, 0030168 platelet activation, 0051258 protein polymerization, 0005577 fibrinogen complex; PDB: 1LWU_D 1N73_D 1M1J_B 1JY2_R 1JY3_R 1RF0_A 2H43_D 1RE4_D 2XNY_D 2HPC_D ....
Probab=78.48 E-value=65 Score=30.91 Aligned_cols=112 Identities=15% Similarity=0.208 Sum_probs=72.0
Q ss_pred HhhHHHHHHHHHHHHhhhhhhhhhhhhhhHHhHHHHHHHhhhhhccccchhHH-HHHHHHHHHHH-HHHHhHHHHHHHHH
Q 006114 231 LADTTQLYEKKIAELNKKLEDEHACFEGAVEQLDMVKKLLSDYQNSNQGQKEV-HELCVKLKETR-QLHESAVYEVQTLK 308 (660)
Q Consensus 231 l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~-~~Lk~~Le~e~-~~~e~~e~E~~~lk 308 (660)
|..+-..+-+.|.+|...|.+-...+.++..-...++..+-..|+...+.+-+ ..+.+.|+++. --++... .
T Consensus 27 L~k~~~~v~~~i~~L~~~L~~~~n~t~~~~~~v~~i~~~~~~~q~~~~~n~~i~~~~s~~l~~~~~~~~e~~i---~--- 100 (146)
T PF08702_consen 27 LDKYERDVDKDIQELENLLDQISNSTSEAFEYVKNIKDSLRPRQKQAKPNDNIYNQYSKSLRKMIIYILETKI---I--- 100 (146)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHH---H---
T ss_pred HHHHccchHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhccccccCCcccHHHHHHHHHHHHHHHHHHHHH---h---
Confidence 33334445567778888888888888888888888888888888887776555 66666666655 2222222 0
Q ss_pred HHHHHHHHhhhhccHHHHHHHHHHHHHHHHhhhhHHHHHHHHhhCCCCCCc
Q 006114 309 SEYKNLLEEKETMSDELQAARQRLLVEEKQRKAIEYELVKLKKTAPEHDDD 359 (660)
Q Consensus 309 s~l~~l~~~~~~~~eel~~~~k~l~~e~~~rkkLe~E~~~l~~~l~~~~~~ 359 (660)
++. .-|..++.++.+-..+=.+|+..++.+...|..+|..
T Consensus 101 ~~~-----------~~I~~Lq~~~~~~~~ki~~Le~~i~~~~~~Ck~pC~~ 140 (146)
T PF08702_consen 101 NQP-----------SNIRVLQNILRSNRQKIQRLEQDIDQQERYCKEPCKD 140 (146)
T ss_dssp HHH-----------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHCTTSTBEE
T ss_pred hhH-----------hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCcccc
Confidence 000 1122333344444444478999999999999988764
No 381
>PF12530 DUF3730: Protein of unknown function (DUF3730) ; InterPro: IPR022542 This domain is found in eukaryotes, and is typically between 220 and 262 amino acids in length.
Probab=78.35 E-value=74 Score=32.67 Aligned_cols=139 Identities=16% Similarity=0.131 Sum_probs=83.1
Q ss_pred HHHHHHHHccCCCHHHHHHHHHHHHHhhcCc-hhHHHHHhcCccHHHHHhhcCCCCHHHHHHHHHHHHHHh-cChhHHHH
Q 006114 450 LDALLLLLRTSQNTTILRVASGAIANLAMNE-MNQGLIMSRGGGQLLAKTASKTDDPQTLRMVAGALANLC-GNEKLHTM 527 (660)
Q Consensus 450 I~~Lv~LL~~s~d~~v~~~Aa~AL~nLA~~~-~n~~~Ive~g~I~~Ll~LL~~s~d~~v~~~Aa~aLanLa-~~~~~r~~ 527 (660)
+|.|+.-+....++.+......+|+.++.+. .+...+ +..|..+.. .++......+.+.+..+- .++..-
T Consensus 2 l~~L~~~l~~~~~~~~~~~~L~~L~~l~~~~~~~~~~v-----~~~L~~L~~-~~~~~~~~~~~rLl~~lw~~~~r~f-- 73 (234)
T PF12530_consen 2 LPLLLYKLGKISDPELQLPLLEALPSLACHKNVCVPPV-----LQTLVSLVE-QGSLELRYVALRLLTLLWKANDRHF-- 73 (234)
T ss_pred hHHHHHHhcCCCChHHHHHHHHHHHHHhccCccchhHH-----HHHHHHHHc-CCchhHHHHHHHHHHHHHHhCchHH--
Confidence 4666666666889999999999999999887 433332 344444443 344444334445555543 222111
Q ss_pred HHhccHHHHHHHH--hc--------CCCHHHHHHHHHHHHHhhccchhhhhhcchhhhHHHhhcChHHHHHHhh-cCCCH
Q 006114 528 LEEDGAIKALLAM--VR--------SGNIDVIAQVARGLANFAKCESRAIVQGQRKGRSHLMEDSALEWLIANS-KTNSA 596 (660)
Q Consensus 528 iv~~G~V~~Lv~l--L~--------s~~~~v~~~Al~aLanLA~~~~~~~aq~~~e~r~~Li~~G~v~~Lv~lL-~s~d~ 596 (660)
|.+..++.. ++ ....+.......++..+|...|+ .....++.+..++ .+.++
T Consensus 74 ----~~L~~~L~~~~~r~~~~~~~~~~~~~~~i~~a~s~~~ic~~~p~-------------~g~~ll~~ls~~L~~~~~~ 136 (234)
T PF12530_consen 74 ----PFLQPLLLLLILRIPSSFSSKDEFWECLISIAASIRDICCSRPD-------------HGVDLLPLLSGCLNQSCDE 136 (234)
T ss_pred ----HHHHHHHHHHHhhcccccCCCcchHHHHHHHHHHHHHHHHhChh-------------hHHHHHHHHHHHHhccccH
Confidence 333333333 11 12234455556677788765542 1123667788888 67788
Q ss_pred HHHHHHHHHHHHhhcCC
Q 006114 597 STRRHVELALCHLAQNE 613 (660)
Q Consensus 597 ~vr~~Aa~AL~nLa~~~ 613 (660)
.++..+..+|..||...
T Consensus 137 ~~~alale~l~~Lc~~~ 153 (234)
T PF12530_consen 137 VAQALALEALAPLCEAE 153 (234)
T ss_pred HHHHHHHHHHHHHHHHh
Confidence 89999999999999543
No 382
>PF10212 TTKRSYEDQ: Predicted coiled-coil domain-containing protein; InterPro: IPR019348 This entry represents a C-terminal 500 residue region, which contains a conserved TTKRSYEDQ motif. It is found in a family of coiled-coil domain-containing proteins that are conserved from nematodes to humans. These proteins also contain an N-terminal domain with a KLRAQ motif (IPR019343 from INTERPRO). The function of these proteins is not known.
Probab=77.87 E-value=98 Score=35.60 Aligned_cols=89 Identities=18% Similarity=0.239 Sum_probs=44.4
Q ss_pred HHHHHHHHhhhhhhhhhhhhhhHHhHHHHHHHhhhhhccccchhHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHh
Q 006114 238 YEKKIAELNKKLEDEHACFEGAVEQLDMVKKLLSDYQNSNQGQKEVHELCVKLKETRQLHESAVYEVQTLKSEYKNLLEE 317 (660)
Q Consensus 238 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~Lk~~Le~e~~~~e~~e~E~~~lks~l~~l~~~ 317 (660)
|.++|.+|..++..=+++.... ..|-..|.+.|+..-+.+++..+|+...+..+..|+.
T Consensus 418 Y~~RI~eLt~qlQ~adSKa~~f--------------------~~Ec~aL~~rL~~aE~ek~~l~eeL~~a~~~i~~LqD- 476 (518)
T PF10212_consen 418 YMSRIEELTSQLQHADSKAVHF--------------------YAECRALQKRLESAEKEKESLEEELKEANQNISRLQD- 476 (518)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH--------------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-
Confidence 7777777776665444433333 2334455555555555666666555555555544332
Q ss_pred hhhccHHHHHHHHHHHHHHHHhhhhHHHHHHHHhhCCCC
Q 006114 318 KETMSDELQAARQRLLVEEKQRKAIEYELVKLKKTAPEH 356 (660)
Q Consensus 318 ~~~~~eel~~~~k~l~~e~~~rkkLe~E~~~l~~~l~~~ 356 (660)
|+..+++.-++-+ .-+.+-+..+..++..+
T Consensus 477 ------EL~TTr~NYE~QL---s~MSEHLasmNeqL~~Q 506 (518)
T PF10212_consen 477 ------ELETTRRNYEEQL---SMMSEHLASMNEQLAKQ 506 (518)
T ss_pred ------HHHHHHhhHHHHH---HHHHHHHHHHHHHHHHH
Confidence 4444444443333 33444444444444333
No 383
>PF09728 Taxilin: Myosin-like coiled-coil protein; InterPro: IPR019132 Taxilin contains an extraordinarily long coiled-coil domain in its C-terminal half and is ubiquitously expressed. It is a novel binding partner of several syntaxin family members and is possibly involved in Ca(2+)-dependent exocytosis in neuroendocrine cells []. Gamma-taxilin, described as leucine zipper protein Factor Inhibiting ATF4-mediated Transcription (FIAT), localises to the nucleus in osteoblasts and dimerises with ATF4 to form inactive dimers, thus inhibiting ATF4-mediated transcription [].
Probab=77.39 E-value=1.1e+02 Score=33.00 Aligned_cols=34 Identities=15% Similarity=0.149 Sum_probs=27.9
Q ss_pred chhHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHH
Q 006114 279 GQKEVHELCVKLKETRQLHESAVYEVQTLKSEYK 312 (660)
Q Consensus 279 ~~~e~~~Lk~~Le~e~~~~e~~e~E~~~lks~l~ 312 (660)
+++-....+...++++....++|.|...+++...
T Consensus 235 SNe~F~tfk~Emekm~Kk~kklEKE~~~~k~k~e 268 (309)
T PF09728_consen 235 SNEVFETFKKEMEKMSKKIKKLEKENQTWKSKWE 268 (309)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444488999999999999999999988888665
No 384
>COG5098 Chromosome condensation complex Condensin, subunit D2 [Chromatin structure and dynamics / Cell division and chromosome partitioning]
Probab=77.03 E-value=7.8 Score=45.46 Aligned_cols=141 Identities=12% Similarity=0.088 Sum_probs=100.3
Q ss_pred HHHHHHhhCC----CCHHHHHHHHHHHHHhhC-CchhHHHHHHcCCHHHHHHHHccCCCHHHHHHHHHHHHHhhcCchhH
Q 006114 409 LPKILQLLTS----EDPDVQIHAVKVVANLAA-EDINQEKIVEEGGLDALLLLLRTSQNTTILRVASGAIANLAMNEMNQ 483 (660)
Q Consensus 409 I~~LV~LL~s----~d~~vr~~Aa~aL~nLa~-~~en~~~Ive~GgI~~Lv~LL~~s~d~~v~~~Aa~AL~nLA~~~~n~ 483 (660)
-|.+.....+ .|+.++..|.-.|..+.. +-..+. .-+|.|+..+..+|+|.++.+|.-.|+.++.+-.+
T Consensus 894 ~pvVeE~csn~~~~sd~~lq~aA~l~L~klMClS~~fc~-----ehlpllIt~mek~p~P~IR~NaVvglgD~~vcfN~- 967 (1128)
T COG5098 894 KPVVEEGCSNSSRFSDEELQVAAYLSLYKLMCLSFEFCS-----EHLPLLITSMEKHPIPRIRANAVVGLGDFLVCFNT- 967 (1128)
T ss_pred hHHHHHHhccccccCCHHHHHHHHHHHHHHHHHhHHHHH-----HHHHHHHHHHhhCCCcceeccceeeccccceehhh-
Confidence 3444455543 689999999888887654 332221 24899999998899999999999999887654110
Q ss_pred HHHHhcCccHHHHHhhcCCCCHHHHHHHHHHHHHHhcChhHHHHHHhccHHHHHHHHhcCCCHHHHHHHHHHHHHhhccc
Q 006114 484 GLIMSRGGGQLLAKTASKTDDPQTLRMVAGALANLCGNEKLHTMLEEDGAIKALLAMVRSGNIDVIAQVARGLANFAKCE 563 (660)
Q Consensus 484 ~~Ive~g~I~~Ll~LL~~s~d~~v~~~Aa~aLanLa~~~~~r~~iv~~G~V~~Lv~lL~s~~~~v~~~Al~aLanLA~~~ 563 (660)
.++. .-..|.+-|.+ .+..|++.|..++++|..- ..+--.|-++.++.++..++..+..-|-..+..||+-+
T Consensus 968 --~~de-~t~yLyrrL~D-e~~~V~rtclmti~fLila----gq~KVKGqlg~ma~~L~deda~Isdmar~fft~~a~Kd 1039 (1128)
T COG5098 968 --TADE-HTHYLYRRLGD-EDADVRRTCLMTIHFLILA----GQLKVKGQLGKMALLLTDEDAEISDMARHFFTQIAKKD 1039 (1128)
T ss_pred --hhHH-HHHHHHHHhcc-hhhHHHHHHHHHHHHHHHc----cceeeccchhhhHhhccCCcchHHHHHHHHHHHHHhcc
Confidence 1111 23456666654 7889999999999988631 13333577788888999999999888888888888654
No 385
>PF10363 DUF2435: Protein of unknown function (DUF2435)
Probab=76.85 E-value=9.5 Score=33.61 Aligned_cols=70 Identities=14% Similarity=0.138 Sum_probs=52.9
Q ss_pred HHHHHhhcCCCCHHHHHHHHHHHHHHhcChhHHHHHHhccHHHHHHHHhcCCCHHHHHHHHHHHHHhhccch
Q 006114 493 QLLAKTASKTDDPQTLRMVAGALANLCGNEKLHTMLEEDGAIKALLAMVRSGNIDVIAQVARGLANFAKCES 564 (660)
Q Consensus 493 ~~Ll~LL~~s~d~~v~~~Aa~aLanLa~~~~~r~~iv~~G~V~~Lv~lL~s~~~~v~~~Al~aLanLA~~~~ 564 (660)
...+.-+.+ +.+.++..+...|+.|..... ...+--.+++..+...+..+++-|-.+|+.+|+.+|...+
T Consensus 6 ~~al~~L~d-p~~PvRa~gL~~L~~Li~~~~-~~~~~~~~il~l~l~~L~d~DsyVYL~aI~~L~~La~~~p 75 (92)
T PF10363_consen 6 QEALSDLND-PLPPVRAHGLVLLRKLIESKS-EPVIDIPKILDLFLSQLKDEDSYVYLNAIKGLAALADRHP 75 (92)
T ss_pred HHHHHHccC-CCcchHHHHHHHHHHHHHcCC-cchhhHHHHHHHHHHHcCCCCchHHHHHHHHHHHHHHHCh
Confidence 344555554 667899999999999985555 2233335778888888999999999999999999996544
No 386
>KOG0976 consensus Rho/Rac1-interacting serine/threonine kinase Citron [Signal transduction mechanisms]
Probab=76.39 E-value=1.9e+02 Score=35.09 Aligned_cols=125 Identities=20% Similarity=0.193 Sum_probs=59.8
Q ss_pred hhhhhhHHHHhhhhHHHHHHHHHhhhhhhhhhhhhHHHHHHH-------HHHHhhhhhh----------hhhhhhhhHHH
Q 006114 108 LVTRSEFLEKENAHLELEVEKILGELNHQKDQNNLKREKIVQ-------LEISLKNSKQ----------QQLDNSSYQKV 170 (660)
Q Consensus 108 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------~~~~~~~~~~----------~~~~~~~~~~~ 170 (660)
++++.+....+|..|+.-++.+..++- .+|..++..-+.+. -++.|---+| +--|-.++.++
T Consensus 185 ~~tkl~e~~~en~~le~k~~k~~e~~~-~nD~~sle~~~~q~~tq~vl~ev~QLss~~q~ltp~rk~~s~i~E~d~~lq~ 263 (1265)
T KOG0976|consen 185 FQTKLAEANREKKALEEKLEKFKEDLI-EKDQKSLELHKDQENTQKVLKEVMQLSSQKQTLTPLRKTCSMIEEQDMDLQA 263 (1265)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhh-cchHHHHHHHHHHHHHHHHHHHHHHHHHhHhhhhhHhhhhHHHHHHHHHHHH
Confidence 455556667778888877777776651 12222222222222 2222211111 11123344445
Q ss_pred HHHhhHHHHHHHHHHHHHHHHHHhhhhchHHHHHHHHHHHhhhhhh-----------HHHHhhhhhHHHHHHhhHHH
Q 006114 171 LADTTQMYEKKITELIKQLEIEHARSEGAEEQVDTMKKLISDNQKS-----------IEQYEMENSTYQKALADTTQ 236 (660)
Q Consensus 171 ~~~~~~~~~~~~~~l~~~l~~e~~~~~~~~~~~~~l~~~l~~~~~~-----------~~~~~~~~~~~~~~l~~~~~ 236 (660)
+||.+-..+...+-...-|.+|.+... +-|..++.-|.+.+++ -+=...+|-..+.+.+|..+
T Consensus 264 sak~ieE~m~qlk~kns~L~~ElSqke---elVk~~qeeLd~lkqt~t~a~gdseqatkylh~enmkltrqkadirc 337 (1265)
T KOG0976|consen 264 SAKEIEEKMRQLKAKNSVLGDELSQKE---ELVKELQEELDTLKQTRTRADGDSEQATKYLHLENMKLTRQKADIRC 337 (1265)
T ss_pred HHHHHHHHHHHHHHHHHHHhhhhhHHH---HHHHHHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 666665555555555666777766543 3333444444444432 22234555555555555544
No 387
>PF05701 WEMBL: Weak chloroplast movement under blue light; InterPro: IPR008545 This family consists of several plant proteins of unknown function. Several sequences in this family are described as being myosin heavy chain-like.
Probab=76.39 E-value=1.6e+02 Score=34.22 Aligned_cols=144 Identities=22% Similarity=0.245 Sum_probs=69.9
Q ss_pred hHHHHHHHHHHHHHHHHHhhhhch---HHHHHHHHHHHhhHHHHHHhhhhhhhHHHHhhhhHHHHHHHHHhhhhhhhhhh
Q 006114 64 NLVTQVELLTAKIEMQQKLRENDK---YEFEKQLRESQISYDESMRNLVTRSEFLEKENAHLELEVEKILGELNHQKDQN 140 (660)
Q Consensus 64 ~~~~~~~~~~~~~~~~~~~~~~~~---~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 140 (660)
.-.+.|+.||.+|.+=...-+..+ .+-+++....... ......++.++...-+.++++|.+++..-++-.
T Consensus 169 ~~~~kve~L~~Ei~~lke~l~~~~~a~~eAeee~~~~~~~-------~~~~~~~~~~~leeae~~l~~L~~e~~~~k~Le 241 (522)
T PF05701_consen 169 ENEEKVEELSKEIIALKESLESAKLAHIEAEEERIEIAAE-------REQDAEEWEKELEEAEEELEELKEELEAAKDLE 241 (522)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345678888888776544422221 1122222222222 222333445555555666666666663333322
Q ss_pred h---hHHHHHHHHHHHhhhhhhhhhhhhh----hHHHHHHhhHHHHHHHHHHHHHHHHHHhhhhchHHHHHHHHHHHhhh
Q 006114 141 N---LKREKIVQLEISLKNSKQQQLDNSS----YQKVLADTTQMYEKKITELIKQLEIEHARSEGAEEQVDTMKKLISDN 213 (660)
Q Consensus 141 ~---~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~l~~~l~~e~~~~~~~~~~~~~l~~~l~~~ 213 (660)
+ ..+..+..|..+|+......++... ....+.........++.+.+..|+.-++.-..+..-+..|+..|...
T Consensus 242 ~kL~~a~~~l~~Lq~El~~~~~~~l~~~~~~~~~~~~~~~~l~s~~~ELe~ak~~L~~~k~E~~~L~~~vesL~~ELe~~ 321 (522)
T PF05701_consen 242 SKLAEASAELESLQAELEAAKESKLEEEAEAKEKSSELQSSLASAKKELEEAKKELEKAKEEASSLRASVESLRSELEKE 321 (522)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhhHHhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 2 2234455555566666654444422 22233344555556666666666655555555555555555555444
Q ss_pred h
Q 006114 214 Q 214 (660)
Q Consensus 214 ~ 214 (660)
+
T Consensus 322 K 322 (522)
T PF05701_consen 322 K 322 (522)
T ss_pred H
Confidence 4
No 388
>KOG2137 consensus Protein kinase [Signal transduction mechanisms]
Probab=76.16 E-value=12 Score=44.12 Aligned_cols=134 Identities=16% Similarity=0.063 Sum_probs=92.2
Q ss_pred HhCCCHHHHHHhhCCCCHHHHHHHHHHHHHhhCCchhHHHHHHcCCHHHHHHHHccCCCHHHHHHHHHHHHHhhcCchhH
Q 006114 404 CDEVGLPKILQLLTSEDPDVQIHAVKVVANLAAEDINQEKIVEEGGLDALLLLLRTSQNTTILRVASGAIANLAMNEMNQ 483 (660)
Q Consensus 404 ~e~ggI~~LV~LL~s~d~~vr~~Aa~aL~nLa~~~en~~~Ive~GgI~~Lv~LL~~s~d~~v~~~Aa~AL~nLA~~~~n~ 483 (660)
+....+|.|...+.+.+..+|..++.++..++..-+ -.++..-.+|.|-++.....+..++.+++.|++.++ +
T Consensus 386 ~~~~IlplL~~S~~~~~~~iQ~~~L~~lptv~e~iD--~~~vk~~ilP~l~~l~~~tt~~~vkvn~L~c~~~l~---q-- 458 (700)
T KOG2137|consen 386 VKEKILPLLYRSLEDSDVQIQELALQILPTVAESID--VPFVKQAILPRLKNLAFKTTNLYVKVNVLPCLAGLI---Q-- 458 (700)
T ss_pred HHHHHHHHHHHHhcCcchhhHHHHHHhhhHHHHhcc--HHHHHHHHHHHhhcchhcccchHHHHHHHHHHHHHH---H--
Confidence 445567777788888999999999999998887432 334444468888777666778889999999999886 2
Q ss_pred HHHHhcCccHHHHHhhcC--CCCHHHHHHHHHHHHHHhcChhHHHHHHhccHHHHHHHHhcCCC
Q 006114 484 GLIMSRGGGQLLAKTASK--TDDPQTLRMVAGALANLCGNEKLHTMLEEDGAIKALLAMVRSGN 545 (660)
Q Consensus 484 ~~Ive~g~I~~Ll~LL~~--s~d~~v~~~Aa~aLanLa~~~~~r~~iv~~G~V~~Lv~lL~s~~ 545 (660)
.+....+++.+..++.. ..+|.+.-....+..++.........++...++|.++.+...+.
T Consensus 459 -~lD~~~v~d~~lpi~~~~~~~dp~iv~~~~~i~~~l~~~~~~g~ev~~~~VlPlli~ls~~~~ 521 (700)
T KOG2137|consen 459 -RLDKAAVLDELLPILKCIKTRDPAIVMGFLRIYEALALIIYSGVEVMAENVLPLLIPLSVAPS 521 (700)
T ss_pred -HHHHHHhHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHhhcccceeeehhhhhhhhhhhhhccc
Confidence 23333344444444332 46888887777777777744444355666678888888765443
No 389
>cd03567 VHS_GGA VHS domain family, GGA subfamily; GGA (Golgi-localized, Gamma-ear-containing, Arf-binding) comprise a subfamily of ubiquitously expressed, monomeric, motif-binding cargo/clathrin adaptor proteins. The VHS domain has a superhelical structure similar to the structure of the ARM (Armadillo) repeats and is present at the N-termini of proteins. GGA proteins have a multidomain structure consisting of an N-terminal VHS domain linked by a short proline-rich linker to a GAT (GGA and TOM) domain, which is followed by a long flexible linker to the C-terminal appendage, GAE (gamma-adaptin ear) domain. The VHS domain of GGA proteins binds to the acidic-cluster dileucine (DxxLL) motif found on the cytoplasmic tails of cargo proteins trafficked between the trans-Golgi network and the endosomal system.
Probab=76.00 E-value=12 Score=35.68 Aligned_cols=70 Identities=13% Similarity=-0.052 Sum_probs=58.5
Q ss_pred CHHHHHHHHccCCCHHHHHHHHHHHHHhhcC--chhHHHHHhcCccHHHHHhhcC-----CCCHHHHHHHHHHHHHHh
Q 006114 449 GLDALLLLLRTSQNTTILRVASGAIANLAMN--EMNQGLIMSRGGGQLLAKTASK-----TDDPQTLRMVAGALANLC 519 (660)
Q Consensus 449 gI~~Lv~LL~~s~d~~v~~~Aa~AL~nLA~~--~~n~~~Ive~g~I~~Ll~LL~~-----s~d~~v~~~Aa~aLanLa 519 (660)
++..|..-|. ++++.++..|..+|-.+..+ +..+..|...+.+..|+.++.. ..++.|+..++..|..++
T Consensus 39 a~rai~krl~-~~n~~v~l~AL~LLe~~vkNCG~~fh~evas~~Fl~el~kl~~~k~~~~~~~~~Vk~kil~li~~W~ 115 (139)
T cd03567 39 AVRLLAHKIQ-SPQEKEALQALTVLEACMKNCGERFHSEVGKFRFLNELIKLVSPKYLGSRTSEKVKTKIIELLYSWT 115 (139)
T ss_pred HHHHHHHHHc-CCCHHHHHHHHHHHHHHHHHcCHHHHHHHHhHHHHHHHHHHhccccCCCCCCHHHHHHHHHHHHHHH
Confidence 5777888887 88999999999999998876 7778888889999999999953 257899999998888887
No 390
>PF06120 Phage_HK97_TLTM: Tail length tape measure protein; InterPro: IPR009302 This entry consists of the tail length tape measure protein from Bacteriophage HK97 and related sequences from Escherichia coli (strain K12).
Probab=75.39 E-value=73 Score=34.25 Aligned_cols=95 Identities=14% Similarity=0.182 Sum_probs=58.0
Q ss_pred HHHHHHhhHHHHHHHHHHHHHHHHHHhhhhchHHHHHHHHHHHhhhhhhHHHHhhhhhHHHHHHhh---HHHHHHHHHHH
Q 006114 168 QKVLADTTQMYEKKITELIKQLEIEHARSEGAEEQVDTMKKLISDNQKSIEQYEMENSTYQKALAD---TTQLYEKKIAE 244 (660)
Q Consensus 168 ~~~~~~~~~~~~~~~~~l~~~l~~e~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~l~~---~~~~~~~~~~~ 244 (660)
...++.++...+..|.+..+.+++.......+.+++...+..+.+.. .+..-.+.. .-.-+..++++
T Consensus 69 ~~ql~~~~~k~~~si~~q~~~i~~l~~~i~~l~~~i~~y~~~~~~~~----------~~~~~~~~n~~~~~~~~t~~la~ 138 (301)
T PF06120_consen 69 STQLRANIAKAEESIAAQKRAIEDLQKKIDSLKDQIKNYQQQLAEKG----------ITENGYIINHLMSQADATRKLAE 138 (301)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccC----------CCcchHHHHHHHHHHHHHHHHHH
Confidence 44567778888888888888877766554444444443333333322 111111211 12346678888
Q ss_pred HhhhhhhhhhhhhhhHHhHHHHHHHhhh
Q 006114 245 LNKKLEDEHACFEGAVEQLDMVKKLLSD 272 (660)
Q Consensus 245 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 272 (660)
+...|++++.+.+.+......+.++|.|
T Consensus 139 ~t~~L~~~~~~l~q~~~k~~~~q~~l~~ 166 (301)
T PF06120_consen 139 ATRELAVAQERLEQMQSKASETQATLND 166 (301)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 8888888888888887766666666654
No 391
>KOG0301 consensus Phospholipase A2-activating protein (contains WD40 repeats) [Lipid transport and metabolism]
Probab=75.36 E-value=1.1e+02 Score=36.19 Aligned_cols=172 Identities=16% Similarity=0.145 Sum_probs=99.4
Q ss_pred CHHHHHHHHHHHHHhhcCchhHHHHHh----cCccHHHHHhhcCCCCHHHHHHHHHHHHHHhcChhHHHHHHhccHHHHH
Q 006114 462 NTTILRVASGAIANLAMNEMNQGLIMS----RGGGQLLAKTASKTDDPQTLRMVAGALANLCGNEKLHTMLEEDGAIKAL 537 (660)
Q Consensus 462 d~~v~~~Aa~AL~nLA~~~~n~~~Ive----~g~I~~Ll~LL~~s~d~~v~~~Aa~aLanLa~~~~~r~~iv~~G~V~~L 537 (660)
..+.+--|.-+|+-+..++..-..+.. ...+..++..+. .+|..+..++.+|+|+..++.++.-+... ...+
T Consensus 557 p~~~~fPalDilRl~v~h~~~~s~~~~~~~~~~~~~~li~~~~--~~~an~ll~vR~L~N~f~~~~g~~~~~s~--~~~i 632 (745)
T KOG0301|consen 557 PVEMMFPALDILRLAVKHHSSNSLFCDREEGQNLVGTLIPILN--ADPANQLLVVRCLANLFSNPAGRELFMSR--LESI 632 (745)
T ss_pred CHHHhhhHHHHHHHHHhccchhhhhhhhhhhhHHHHhhhcccc--cchhHHHHHHHHHHHhccCHHHHHHHHHH--HHHH
Confidence 445566677777777766444333333 234445555553 56777888999999999889888877654 2222
Q ss_pred HHHh---c-CCCHHHHHHHHHHHHHhhccchhhhhhcchhhhHHHhhcChHHHHHHhhcCC-----CHHHHHHHHHHHHH
Q 006114 538 LAMV---R-SGNIDVIAQVARGLANFAKCESRAIVQGQRKGRSHLMEDSALEWLIANSKTN-----SASTRRHVELALCH 608 (660)
Q Consensus 538 v~lL---~-s~~~~v~~~Al~aLanLA~~~~~~~aq~~~e~r~~Li~~G~v~~Lv~lL~s~-----d~~vr~~Aa~AL~n 608 (660)
...+ . .++..+.........|++.+ ..+. -.+.|+.+.+...+... |-...-....||++
T Consensus 633 ~~~~~~~~s~~~knl~ia~atlaln~sv~----l~~~-------~~~~~~~~~l~~ai~~~~e~~~d~EA~yR~l~Algt 701 (745)
T KOG0301|consen 633 LDPVIEASSLSNKNLQIALATLALNYSVL----LIQD-------NEQLEGKEVLLSAISTLLEPVDDLEAIYRLLVALGT 701 (745)
T ss_pred hhhhhhhhcccchhHHHHHHHHHHHHHHH----HHhc-------ccccchHHHHHHHHHhhcccchhHHHHHHHHHHHHh
Confidence 2222 2 33445544443333344422 1110 01145666666555442 22223345678888
Q ss_pred hhcCCccHHHHHhcCcHHHHHHHHhcC-ChHHHHHHHHHHH
Q 006114 609 LAQNEDNARDFISRGGAKELVQISIES-SREDIRNLAKKTM 648 (660)
Q Consensus 609 La~~~e~~~~Ive~G~l~~Lv~lL~s~-s~~~ir~~A~~~L 648 (660)
|+..+.....+...-.+..+..-+++. +.+..+.-|+.+|
T Consensus 702 L~t~~~~~~~~A~~~~v~sia~~~~~~~~~~~~k~~a~~il 742 (745)
T KOG0301|consen 702 LMTVDASVIQLAKNRSVDSIAKKLKEAVSNPSGKNIARDIL 742 (745)
T ss_pred hccccHHHHHHHHhcCHHHHHHHHHHhccCchhhHHHHHHH
Confidence 888888888888766777777777655 4444555555544
No 392
>KOG0971 consensus Microtubule-associated protein dynactin DCTN1/Glued [Cell cycle control, cell division, chromosome partitioning; Cytoskeleton]
Probab=75.34 E-value=2.1e+02 Score=35.17 Aligned_cols=155 Identities=22% Similarity=0.254 Sum_probs=74.4
Q ss_pred HHHHHHHHHhhHHHHHHhhhhhhhHHHHhhhhHHHHHHHHHhhhhhhhhhh-hhHHHHHHHHHHH---hhhhhhhhhhhh
Q 006114 90 FEKQLRESQISYDESMRNLVTRSEFLEKENAHLELEVEKILGELNHQKDQN-NLKREKIVQLEIS---LKNSKQQQLDNS 165 (660)
Q Consensus 90 ~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~---~~~~~~~~~~~~ 165 (660)
|+|+++|=|. .+|.+..|-+..-+..|+.++.=|+.+.+.+-+.. +.-+-+..|||+. ||..-=+--|.+
T Consensus 318 ldKEmAEERa------esLQ~eve~lkEr~deletdlEILKaEmeekG~~~~~~ss~qfkqlEqqN~rLKdalVrLRDls 391 (1243)
T KOG0971|consen 318 LDKEMAEERA------ESLQQEVEALKERVDELETDLEILKAEMEEKGSDGQAASSYQFKQLEQQNARLKDALVRLRDLS 391 (1243)
T ss_pred hhHHHHHHHH------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCcccchHHHHHHHHHHHHHHHHHHHHHhcc
Confidence 4555555443 23334444444455666666666666665554333 4445566666642 333222222222
Q ss_pred hhHHHHHHhhHHHHHHHHHHHHHHHHHHhhhhchHHHHHHHHHHHhhhhhhHHHHhhhhhHHHHHHhhHHHHHHHH--HH
Q 006114 166 SYQKVLADTTQMYEKKITELIKQLEIEHARSEGAEEQVDTMKKLISDNQKSIEQYEMENSTYQKALADTTQLYEKK--IA 243 (660)
Q Consensus 166 ~~~~~~~~~~~~~~~~~~~l~~~l~~e~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~--~~ 243 (660)
..-+ ...|.+-|++...+..++.-......+..+++.++..+.|+|..+ +.+--+=+=.||+-.|+ ..
T Consensus 392 A~ek---~d~qK~~kelE~k~sE~~eL~r~kE~Lsr~~d~aEs~iadlkEQV-------DAAlGAE~MV~qLtdknlnlE 461 (1243)
T KOG0971|consen 392 ASEK---QDHQKLQKELEKKNSELEELRRQKERLSRELDQAESTIADLKEQV-------DAALGAEEMVEQLTDKNLNLE 461 (1243)
T ss_pred hHHH---HHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHhhcHHHHHHHHHhhccCHH
Confidence 1111 112233344444444444445555667777777888888877322 11112222334444443 23
Q ss_pred HHhhhhhhhhhhhhhhH
Q 006114 244 ELNKKLEDEHACFEGAV 260 (660)
Q Consensus 244 ~~~~~~~~~~~~~~~~~ 260 (660)
+-.|.||++.+-.+.++
T Consensus 462 ekVklLeetv~dlEale 478 (1243)
T KOG0971|consen 462 EKVKLLEETVGDLEALE 478 (1243)
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 44555666665555543
No 393
>PRK11281 hypothetical protein; Provisional
Probab=75.31 E-value=2.4e+02 Score=35.88 Aligned_cols=41 Identities=10% Similarity=0.161 Sum_probs=24.2
Q ss_pred HHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHhhhhccHH
Q 006114 284 HELCVKLKETRQLHESAVYEVQTLKSEYKNLLEEKETMSDE 324 (660)
Q Consensus 284 ~~Lk~~Le~e~~~~e~~e~E~~~lks~l~~l~~~~~~~~ee 324 (660)
..|-..|...++.-..+.++-.+.++++.++.++.....+.
T Consensus 288 ~~Ls~~L~~~t~~~~~l~~~~~~~~~~l~~~~q~~~~i~eq 328 (1113)
T PRK11281 288 LQLSQRLLKATEKLNTLTQQNLRVKNWLDRLTQSERNIKEQ 328 (1113)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 55666666666666666666666666666655554444433
No 394
>PF12031 DUF3518: Domain of unknown function (DUF3518); InterPro: IPR021906 This presumed domain is functionally uncharacterised. This domain is found in eukaryotes. This domain is about 260 amino acids in length. This domain is found associated with PF01388 from PFAM.
Probab=75.24 E-value=5.9 Score=41.01 Aligned_cols=81 Identities=17% Similarity=0.151 Sum_probs=63.5
Q ss_pred HHHHHHHHHHHHHhhCCchhHHHHHHcCC-------HHHHHHHHccCCCHHHHHHHHHHHHHhhcCchh-H-HHHHhcCc
Q 006114 421 PDVQIHAVKVVANLAAEDINQEKIVEEGG-------LDALLLLLRTSQNTTILRVASGAIANLAMNEMN-Q-GLIMSRGG 491 (660)
Q Consensus 421 ~~vr~~Aa~aL~nLa~~~en~~~Ive~Gg-------I~~Lv~LL~~s~d~~v~~~Aa~AL~nLA~~~~n-~-~~Ive~g~ 491 (660)
..-|+-|+.+|+.|+..+.|...|...+. +..|+.+|....++..++.|...|.+||..+.. . ..-...+.
T Consensus 138 lSPqrlaLEaLcKLsV~e~NVDliLaTpp~sRlE~l~~~L~r~l~~~e~~v~REfAvvlL~~La~~~~~~~r~iA~q~~~ 217 (257)
T PF12031_consen 138 LSPQRLALEALCKLSVIENNVDLILATPPFSRLERLFHTLVRLLGMREDQVCREFAVVLLSNLAQGDEAAARAIAMQKPC 217 (257)
T ss_pred CCHHHHHHHHHHHhheeccCcceeeeCCCHHHHHHHHHHHHHHhccccchhHHHHHHHHHHHHhcccHHHHHHHHHhhch
Confidence 35678999999999998888888777654 444566666678999999999999999987443 3 33345888
Q ss_pred cHHHHHhhcC
Q 006114 492 GQLLAKTASK 501 (660)
Q Consensus 492 I~~Ll~LL~~ 501 (660)
|..|+.++.+
T Consensus 218 i~~Li~FiE~ 227 (257)
T PF12031_consen 218 ISHLIAFIED 227 (257)
T ss_pred HHHHHHHHHH
Confidence 9999999865
No 395
>KOG1850 consensus Myosin-like coiled-coil protein [Cytoskeleton]
Probab=75.16 E-value=1.3e+02 Score=32.57 Aligned_cols=48 Identities=23% Similarity=0.382 Sum_probs=28.4
Q ss_pred HHHHHHHHhhhhhhHHHHhhhhhHHHH----------HHhhHHHHHHHHHHHHhhhhh
Q 006114 203 VDTMKKLISDNQKSIEQYEMENSTYQK----------ALADTTQLYEKKIAELNKKLE 250 (660)
Q Consensus 203 ~~~l~~~l~~~~~~~~~~~~~~~~~~~----------~l~~~~~~~~~~~~~~~~~~~ 250 (660)
+...++-+...-|.+.+.++|-..|.. .+|.+-+.|.++++-|.++++
T Consensus 245 F~~fK~E~ekmtKk~kklEKE~l~wr~K~e~aNk~vL~la~ekt~~~k~~~~lq~kiq 302 (391)
T KOG1850|consen 245 FTKFKQEMEKMTKKIKKLEKETLIWRTKWENANKAVLQLAEEKTVRDKEYETLQKKIQ 302 (391)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHhHHHHHHHHHHHHHHH
Confidence 344444445555555555555544433 466677777777777777765
No 396
>KOG4464 consensus Signaling protein RIC-8/synembryn (regulates neurotransmitter secretion) [Signal transduction mechanisms]
Probab=74.72 E-value=47 Score=37.09 Aligned_cols=153 Identities=16% Similarity=0.072 Sum_probs=83.4
Q ss_pred HHHHHccCCCHHHHHHHHHHHHHhhcCchhHHHHHhcCccHHHHHhh---------cCCCCHHHHHHHHHHHHHHh-cCh
Q 006114 453 LLLLLRTSQNTTILRVASGAIANLAMNEMNQGLIMSRGGGQLLAKTA---------SKTDDPQTLRMVAGALANLC-GNE 522 (660)
Q Consensus 453 Lv~LL~~s~d~~v~~~Aa~AL~nLA~~~~n~~~Ive~g~I~~Ll~LL---------~~s~d~~v~~~Aa~aLanLa-~~~ 522 (660)
++.+|..+..+..+..+...+..|+.+.+.-..+...-.+..|+.+. ...++..|...+..+|+|+. .++
T Consensus 50 i~~Vle~~~p~t~~v~~LetvrILSRdk~~L~~~~~~q~~~~ll~~A~ls~~e~sl~~v~d~~vi~EslKCLcNlvf~Sq 129 (532)
T KOG4464|consen 50 IFEVLENGEPLTHRVVCLETVRILSRDKDGLEPLTNDQLCQKLLALAELSSNENSLPTVADMHVIMESLKCLCNLVFHSQ 129 (532)
T ss_pred HHHHHhcCCCchhhhhHHHHHHHHhccccccccccchHHHHHHHHHHHhccccCCCCcccchHHHHHHHHHHHHHHhccH
Confidence 44555444444455556666666666533222222211222222222 11245678889999999998 667
Q ss_pred hHHHHHHhccHHHHHHHHhcC-----CCHHHHHHHHHHHHHhhccchhhhhhcchhhhH-HHhhcChHHHHHHhhcCC--
Q 006114 523 KLHTMLEEDGAIKALLAMVRS-----GNIDVIAQVARGLANFAKCESRAIVQGQRKGRS-HLMEDSALEWLIANSKTN-- 594 (660)
Q Consensus 523 ~~r~~iv~~G~V~~Lv~lL~s-----~~~~v~~~Al~aLanLA~~~~~~~aq~~~e~r~-~Li~~G~v~~Lv~lL~s~-- 594 (660)
..+....+...+..++..+.. ...++...=++.|.-+..-.. ..|. .+...+|++.+...+.+.
T Consensus 130 ~~q~~~~~~~~~~~ll~~v~~~~er~~~~~~~~~dlrLLflltale~--------~~Rsql~~~l~Gl~~lt~~led~lg 201 (532)
T KOG4464|consen 130 RAQDLFLENPLTGKLLQRVLGEFERNFPKDSSIFDLRLLFLLTALET--------DHRSQLIAELLGLELLTNWLEDKLG 201 (532)
T ss_pred HHHHHHHhhhhHHHHHHHHHHHHHhcCCccchhhHHHHHHHHHHhhH--------HHHHHHHHHhcccHHHHHHhhcccc
Confidence 777777777777766666531 222333333444444443322 2333 455688888888877652
Q ss_pred -C---------HH---HHHHHHHHHHHhhcCC
Q 006114 595 -S---------AS---TRRHVELALCHLAQNE 613 (660)
Q Consensus 595 -d---------~~---vr~~Aa~AL~nLa~~~ 613 (660)
+ ++ .-..|..+++|+..++
T Consensus 202 idse~n~~~l~pqe~n~a~EaLK~~FNvt~~~ 233 (532)
T KOG4464|consen 202 IDSEINVPPLNPQETNRACEALKVFFNVTCDS 233 (532)
T ss_pred CCCCcCCCCCCHHHHHHHHHHHHHHhheeecc
Confidence 1 12 2334566677777665
No 397
>PF04111 APG6: Autophagy protein Apg6; InterPro: IPR007243 Macroautophagy is a bulk degradation process induced by starvation in eukaryotic cells. In yeast, 15 Apg proteins coordinate the formation of autophagosomes. No molecule involved in autophagy has yet been identified in higher eukaryotes []. The pre-autophagosomal structure contains at least five Apg proteins: Apg1p, Apg2p, Apg5p, Aut7p/Apg8p and Apg16p. It is found in the vacuole []. The C-terminal glycine of Apg12p is conjugated to a lysine residue of Apg5p via an isopeptide bond. During autophagy, cytoplasmic components are enclosed in autophagosomes and delivered to lysosomes/vacuoles. Auotphagy protein 16 (Apg16) has been shown to be bind to Apg5 and is required for the function of the Apg12p-Apg5p conjugate []. Autophagy protein 5 (Apg5) is directly required for the import of aminopeptidase I via the cytoplasm-to-vacuole targeting pathway []. Apg6/Vps30p has two distinct functions in the autophagic process, either associated with the membrane or in a retrieval step of the carboxypeptidase Y sorting pathway [].; GO: 0006914 autophagy; PDB: 3Q8T_A 3VP7_A 4DDP_A.
Probab=74.72 E-value=27 Score=37.76 Aligned_cols=87 Identities=21% Similarity=0.307 Sum_probs=48.5
Q ss_pred HHHHhhHHHHHHHHHHHHHHHHHHhhhhchHHHHHHHHHHHhhhhhhHHHHhhhhhHHHHHHhhHHHHHHHHHHHHhhhh
Q 006114 170 VLADTTQMYEKKITELIKQLEIEHARSEGAEEQVDTMKKLISDNQKSIEQYEMENSTYQKALADTTQLYEKKIAELNKKL 249 (660)
Q Consensus 170 ~~~~~~~~~~~~~~~l~~~l~~e~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~ 249 (660)
.+.++.+.++++.+++.+.|+.--..+..+..++..|+....+++..+.++-.+...++..+. ++.+..
T Consensus 47 ~~~~el~~le~Ee~~l~~eL~~LE~e~~~l~~el~~le~e~~~l~~eE~~~~~~~n~~~~~l~-----------~~~~e~ 115 (314)
T PF04111_consen 47 ELEEELEKLEQEEEELLQELEELEKEREELDQELEELEEELEELDEEEEEYWREYNELQLELI-----------EFQEER 115 (314)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----------HHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----------HHHHHH
Confidence 444555666666677777666666666666666777777777766555544444444444333 333333
Q ss_pred hhhhhhhhhhHHhHHHHH
Q 006114 250 EDEHACFEGAVEQLDMVK 267 (660)
Q Consensus 250 ~~~~~~~~~~~~~~~~~~ 267 (660)
..-.+++.-+..+|+.++
T Consensus 116 ~sl~~q~~~~~~~L~~L~ 133 (314)
T PF04111_consen 116 DSLKNQYEYASNQLDRLR 133 (314)
T ss_dssp HHHHHHHHHHHHHHHCHH
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 333444444444554444
No 398
>COG5098 Chromosome condensation complex Condensin, subunit D2 [Chromatin structure and dynamics / Cell division and chromosome partitioning]
Probab=74.68 E-value=17 Score=42.85 Aligned_cols=130 Identities=11% Similarity=0.029 Sum_probs=95.2
Q ss_pred CCHHHHHHHHHHHHHhh-cCchhHHHHHhcCccHHHHHhhcCCCCHHHHHHHHHHHHHHhcC-hhHHHHHHhccHHHHHH
Q 006114 461 QNTTILRVASGAIANLA-MNEMNQGLIMSRGGGQLLAKTASKTDDPQTLRMVAGALANLCGN-EKLHTMLEEDGAIKALL 538 (660)
Q Consensus 461 ~d~~v~~~Aa~AL~nLA-~~~~n~~~Ive~g~I~~Ll~LL~~s~d~~v~~~Aa~aLanLa~~-~~~r~~iv~~G~V~~Lv 538 (660)
.|+.++..|..+|..+. ..-. +. ..-+|.|+..+..+++|.++.+|.-+++-++.+ ..... ..-..|.
T Consensus 908 sd~~lq~aA~l~L~klMClS~~----fc-~ehlpllIt~mek~p~P~IR~NaVvglgD~~vcfN~~~d-----e~t~yLy 977 (1128)
T COG5098 908 SDEELQVAAYLSLYKLMCLSFE----FC-SEHLPLLITSMEKHPIPRIRANAVVGLGDFLVCFNTTAD-----EHTHYLY 977 (1128)
T ss_pred CCHHHHHHHHHHHHHHHHHhHH----HH-HHHHHHHHHHHhhCCCcceeccceeeccccceehhhhhH-----HHHHHHH
Confidence 68899998888887662 2111 11 125799999998889999999999888876521 11111 1234566
Q ss_pred HHhcCCCHHHHHHHHHHHHHhhccchhhhhhcchhhhHHHhhcChHHHHHHhhcCCCHHHHHHHHHHHHHhhcCC
Q 006114 539 AMVRSGNIDVIAQVARGLANFAKCESRAIVQGQRKGRSHLMEDSALEWLIANSKTNSASTRRHVELALCHLAQNE 613 (660)
Q Consensus 539 ~lL~s~~~~v~~~Al~aLanLA~~~~~~~aq~~~e~r~~Li~~G~v~~Lv~lL~s~d~~vr~~Aa~AL~nLa~~~ 613 (660)
.-+...+..|+..|++++++|-..+ .+.-.|-++.+..+|.++|..+...|-..+..++...
T Consensus 978 rrL~De~~~V~rtclmti~fLilag-------------q~KVKGqlg~ma~~L~deda~Isdmar~fft~~a~Kd 1039 (1128)
T COG5098 978 RRLGDEDADVRRTCLMTIHFLILAG-------------QLKVKGQLGKMALLLTDEDAEISDMARHFFTQIAKKD 1039 (1128)
T ss_pred HHhcchhhHHHHHHHHHHHHHHHcc-------------ceeeccchhhhHhhccCCcchHHHHHHHHHHHHHhcc
Confidence 7777888999999999999886432 1344788889999999999999999999999887643
No 399
>PF13251 DUF4042: Domain of unknown function (DUF4042)
Probab=74.53 E-value=18 Score=35.98 Aligned_cols=111 Identities=19% Similarity=0.147 Sum_probs=69.6
Q ss_pred ccHHHHHhhcCCCCHHHHHHHHHHHHHHhcChhHHHHHHh-c----cHH---------------HHHHHHhc-CCCHHHH
Q 006114 491 GGQLLAKTASKTDDPQTLRMVAGALANLCGNEKLHTMLEE-D----GAI---------------KALLAMVR-SGNIDVI 549 (660)
Q Consensus 491 ~I~~Ll~LL~~s~d~~v~~~Aa~aLanLa~~~~~r~~iv~-~----G~V---------------~~Lv~lL~-s~~~~v~ 549 (660)
.-+.|+.++-..+++.++..|+.+|+.|-.....--...+ . +.+ ..|+..+. ..++.+.
T Consensus 40 ~~~sLlt~il~Dp~~kvR~aA~~~l~~lL~gsk~~L~~Ae~~~~~~~sFtslS~tLa~~i~~lH~~Ll~~L~~E~~~~~l 119 (182)
T PF13251_consen 40 ATPSLLTCILKDPSPKVRAAAASALAALLEGSKPFLAQAEESKGPSGSFTSLSSTLASMIMELHRGLLLALQAEKSPPVL 119 (182)
T ss_pred CCcchhHHHHcCCchhHHHHHHHHHHHHHHccHHHHHHHHhcCCCCCCcccHHHHHHHHHHHHHHHHHHHHhcccccHHH
Confidence 3444555554558899999999999988643221111111 1 111 12444444 5578889
Q ss_pred HHHHHHHHHhhccchhhhhhcchhhhHHHhhcChH----HHHHHhhcCCCHHHHHHHHHHHHHhhcC
Q 006114 550 AQVARGLANFAKCESRAIVQGQRKGRSHLMEDSAL----EWLIANSKTNSASTRRHVELALCHLAQN 612 (660)
Q Consensus 550 ~~Al~aLanLA~~~~~~~aq~~~e~r~~Li~~G~v----~~Lv~lL~s~d~~vr~~Aa~AL~nLa~~ 612 (660)
..++.+++.+....|-.+ - ..|.+ ..+..++.+.|..++..+..++..+..-
T Consensus 120 ~q~lK~la~Lv~~tPY~r-----L------~~~ll~~~v~~v~~~l~~~d~~v~v~~l~~~~~l~s~ 175 (182)
T PF13251_consen 120 TQLLKCLAVLVQATPYHR-----L------PPGLLTEVVTQVRPLLRHRDPNVRVAALSCLGALLSV 175 (182)
T ss_pred HHHHHHHHHHHccCChhh-----c------CHhHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcC
Confidence 999999999987655211 1 23444 4455667788999999998888877553
No 400
>COG3096 MukB Uncharacterized protein involved in chromosome partitioning [Cell division and chromosome partitioning]
Probab=74.47 E-value=2e+02 Score=34.57 Aligned_cols=129 Identities=26% Similarity=0.316 Sum_probs=91.3
Q ss_pred hhHHHHHHhhHHHHHHH---HHHHHHHHHHHhhhhchHHHHHHHHHHHhhhhhhHHHHhhhhhHHHHHHhhHHHH-----
Q 006114 166 SYQKVLADTTQMYEKKI---TELIKQLEIEHARSEGAEEQVDTMKKLISDNQKSIEQYEMENSTYQKALADTTQL----- 237 (660)
Q Consensus 166 ~~~~~~~~~~~~~~~~~---~~l~~~l~~e~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~l~~~~~~----- 237 (660)
-|+.|++.-|.++|..+ .+-..+++.-..+-...|.+++.++.+|.|+|+-..-++.--..||.+++-....
T Consensus 352 RYQ~Dl~Elt~RLEEQ~~VVeeA~e~~~e~e~r~e~~E~EvD~lksQLADYQQALD~QQTRAlQYQQAi~ALekAk~Lc~ 431 (1480)
T COG3096 352 RYQADLEELTIRLEEQNEVVEEANERQEENEARAEAAELEVDELKSQLADYQQALDVQQTRAIQYQQAIAALERAKELCH 431 (1480)
T ss_pred HHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHhcC
Confidence 34458888888887653 4566677777788889999999999999999998888888888888877632221
Q ss_pred -----------------------------HH-------------HHHHHHhhhhhhhhhhhhhhHHhHHHHHHHhhhhhc
Q 006114 238 -----------------------------YE-------------KKIAELNKKLEDEHACFEGAVEQLDMVKKLLSDYQN 275 (660)
Q Consensus 238 -----------------------------~~-------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 275 (660)
.| .+-=+|..++.+|.+|++.. +.++.+|-++-.
T Consensus 432 l~dLt~~~~e~~~~~f~A~~e~~Te~lL~Le~kms~s~AA~sQF~~AyqLV~~iaGE~~RS~A~----~~A~~llR~~p~ 507 (1480)
T COG3096 432 LPDLTADSAEEWLETFQAKEEEATEKLLSLEQKMSMAQAAHSQFEQAYQLVVAIAGELARSEAW----DVARELLREGPD 507 (1480)
T ss_pred ccccchhhHHHHHHHHHHhHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHhCccchhhHH----HHHHHHHHhChh
Confidence 11 12235777888888888876 567888887766
Q ss_pred cccchhHHHHHHHHHHHHHHHHH
Q 006114 276 SNQGQKEVHELCVKLKETRQLHE 298 (660)
Q Consensus 276 ~~~~~~e~~~Lk~~Le~e~~~~e 298 (660)
-....+....++..+.+--+.+.
T Consensus 508 q~~~aq~~~~lr~~l~eLEqr~~ 530 (1480)
T COG3096 508 QRHLAEQVQPLRMRLSELEQRLR 530 (1480)
T ss_pred hHHHHHhhhHHHHHHHHHHHHHH
Confidence 55556666666666555444443
No 401
>PF07889 DUF1664: Protein of unknown function (DUF1664); InterPro: IPR012458 The members of this family are hypothetical plant proteins of unknown function. The region featured in this family is approximately 100 amino acids long.
Probab=74.19 E-value=54 Score=30.73 Aligned_cols=84 Identities=14% Similarity=0.227 Sum_probs=48.4
Q ss_pred HhhHHHHHhhHHHHHHHHHHHHHHHHHhhhhchHHHHHHHHHHHhhHHHHHHhhhhhhhHHHHhhhhHHHHHHHHHhhhh
Q 006114 55 QISYDEAKDNLVTQVELLTAKIEMQQKLRENDKYEFEKQLRESQISYDESMRNLVTRSEFLEKENAHLELEVEKILGELN 134 (660)
Q Consensus 55 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 134 (660)
+.+.++++..+-+|++++-+.+... |.||-.++..+-...++. ..=......+|-++..++.
T Consensus 38 rr~m~~A~~~v~kql~~vs~~l~~t-------KkhLsqRId~vd~klDe~-----------~ei~~~i~~eV~~v~~dv~ 99 (126)
T PF07889_consen 38 RRSMSDAVASVSKQLEQVSESLSST-------KKHLSQRIDRVDDKLDEQ-----------KEISKQIKDEVTEVREDVS 99 (126)
T ss_pred HHhHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHhhHHHH-----------HHHHHHHHHHHHHHHhhHH
Confidence 4456777777888888877776655 555666666655555554 1112233445555555555
Q ss_pred hhhhhhhhHHHHHHHHHHHhhh
Q 006114 135 HQKDQNNLKREKIVQLEISLKN 156 (660)
Q Consensus 135 ~~~~~~~~~~~~~~~~~~~~~~ 156 (660)
+-.+.-...+.-+..||-++..
T Consensus 100 ~i~~dv~~v~~~V~~Le~ki~~ 121 (126)
T PF07889_consen 100 QIGDDVDSVQQMVEGLEGKIDE 121 (126)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 5555555555555555554443
No 402
>PF10473 CENP-F_leu_zip: Leucine-rich repeats of kinetochore protein Cenp-F/LEK1; InterPro: IPR019513 Cenp-F, a centromeric kinetochore, microtubule-binding protein consisting of two 1,600-amino acid-long coils, is essential for the full functioning of the mitotic checkpoint pathway [, ]. There are several leucine-rich repeats along the sequence of LEK1 that are considered to be zippers, though they do not appear to be binding DNA directly in this instance []. ; GO: 0008134 transcription factor binding, 0042803 protein homodimerization activity, 0045502 dynein binding
Probab=74.02 E-value=84 Score=30.00 Aligned_cols=18 Identities=22% Similarity=0.350 Sum_probs=8.6
Q ss_pred HHHHHHHHHHhhhhhhHH
Q 006114 201 EQVDTMKKLISDNQKSIE 218 (660)
Q Consensus 201 ~~~~~l~~~l~~~~~~~~ 218 (660)
+++..|+...+++..-++
T Consensus 94 ~kv~eLE~~~~~~~~~l~ 111 (140)
T PF10473_consen 94 EKVSELESLNSSLENLLQ 111 (140)
T ss_pred HHHHHHHHHhHHHHHHHH
Confidence 334455555555554443
No 403
>PF04012 PspA_IM30: PspA/IM30 family; InterPro: IPR007157 This family includes PspA a protein that suppresses sigma54-dependent transcription. The PspA protein, a negative regulator of the Escherichia coli phage shock psp operon, is produced when virulence factors are exported through secretins in many Gram-negative pathogenic bacteria and its homologue in plants, VIPP1, plays a critical role in thylakoid biogenesis, essential for photosynthesis. Activation of transcription by the enhancer-dependent bacterial sigma54-containing RNA polymerase occurs through ATP hydrolysis-driven protein conformational changes enabled by activator proteins that belong to the large AAA(+) mechanochemical protein family. It has been shown that PspA directly and specifically acts upon and binds to the AAA(+) domain of the PspF transcription activator [].
Probab=73.94 E-value=1e+02 Score=31.05 Aligned_cols=55 Identities=20% Similarity=0.286 Sum_probs=37.6
Q ss_pred HHHhhhhHHHHHHHHHhhhhhhhhhhhhHHHHHHHHHHHhhhhhhhhhhhhhhHH
Q 006114 115 LEKENAHLELEVEKILGELNHQKDQNNLKREKIVQLEISLKNSKQQQLDNSSYQK 169 (660)
Q Consensus 115 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 169 (660)
...+..+++..+..+...+........-+...+..|+..+.+.+.+......+..
T Consensus 89 al~~k~~~e~~~~~l~~~~~~~~~~~~~l~~~l~~l~~kl~e~k~k~~~l~ar~~ 143 (221)
T PF04012_consen 89 ALQRKADLEEQAERLEQQLDQAEAQVEKLKEQLEELEAKLEELKSKREELKAREN 143 (221)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3445667777777777777777777777777777777777776666666555543
No 404
>PF13851 GAS: Growth-arrest specific micro-tubule binding
Probab=73.90 E-value=1e+02 Score=31.03 Aligned_cols=92 Identities=16% Similarity=0.116 Sum_probs=50.3
Q ss_pred HHHHHHHHhhhhhhhhhhhhhhHHhHHHHHHHhhhhhccccchhHH--HHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHH
Q 006114 238 YEKKIAELNKKLEDEHACFEGAVEQLDMVKKLLSDYQNSNQGQKEV--HELCVKLKETRQLHESAVYEVQTLKSEYKNLL 315 (660)
Q Consensus 238 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~--~~Lk~~Le~e~~~~e~~e~E~~~lks~l~~l~ 315 (660)
.+++|..|...-|.=--||..++.+-|.+..-.-....-.++.-.. .-|+..|......-+..+ .++..+.
T Consensus 98 ~ek~l~~Lk~e~evL~qr~~kle~ErdeL~~kf~~~i~evqQk~~~kn~lLEkKl~~l~~~lE~ke-------aqL~evl 170 (201)
T PF13851_consen 98 LEKELKDLKWEHEVLEQRFEKLEQERDELYRKFESAIQEVQQKTGLKNLLLEKKLQALSEQLEKKE-------AQLNEVL 170 (201)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHH
Confidence 3666666666666666667777766666665444444444444444 556666666666666666 5555544
Q ss_pred HhhhhccHHHHHHHHHHHHHH
Q 006114 316 EEKETMSDELQAARQRLLVEE 336 (660)
Q Consensus 316 ~~~~~~~eel~~~~k~l~~e~ 336 (660)
......-+.+....+.+++-+
T Consensus 171 ~~~nldp~~~~~v~~~l~~~l 191 (201)
T PF13851_consen 171 AAANLDPAALSQVSKKLEDVL 191 (201)
T ss_pred HHcCCCHHHHHHHHHHHHHHH
Confidence 443333333444444444444
No 405
>PF15254 CCDC14: Coiled-coil domain-containing protein 14
Probab=73.65 E-value=1.6e+02 Score=35.40 Aligned_cols=14 Identities=29% Similarity=0.192 Sum_probs=7.5
Q ss_pred HHhhhhhHHHHHHh
Q 006114 219 QYEMENSTYQKALA 232 (660)
Q Consensus 219 ~~~~~~~~~~~~l~ 232 (660)
.-++||-.+.-+|-
T Consensus 519 ~sekEN~iL~itlr 532 (861)
T PF15254_consen 519 ASEKENQILGITLR 532 (861)
T ss_pred HHHhhhhHhhhHHH
Confidence 33466665555554
No 406
>KOG1832 consensus HIV-1 Vpr-binding protein [Cell cycle control, cell division, chromosome partitioning]
Probab=73.55 E-value=35 Score=41.37 Aligned_cols=184 Identities=19% Similarity=0.175 Sum_probs=100.0
Q ss_pred CHHHHHHHHcc---CCCHHHHHHHHHHHHHhhcCchhHHHHHhcCccHHHHHhhcCCCCHHHHHHHHHHHHHHhcChhHH
Q 006114 449 GLDALLLLLRT---SQNTTILRVASGAIANLAMNEMNQGLIMSRGGGQLLAKTASKTDDPQTLRMVAGALANLCGNEKLH 525 (660)
Q Consensus 449 gI~~Lv~LL~~---s~d~~v~~~Aa~AL~nLA~~~~n~~~Ive~g~I~~Ll~LL~~s~d~~v~~~Aa~aLanLa~~~~~r 525 (660)
|+..++.++.. -.|..+.-.+...|+.|+.+......+++.|||..|+.+-.-+ ....-...||..|+.....-
T Consensus 350 g~~~~~~~~~~~~q~~d~~l~~~~~k~~~~l~~h~kfa~~fv~~~gi~kll~vpr~s---~~~~g~s~cly~~~~~q~~m 426 (1516)
T KOG1832|consen 350 GVDVCIVLLERTSQLDDSPLLPDVMKLICALAAHRKFAAMFVERRGILKLLAVPRVS---ETFYGLSSCLYTIGSLQGIM 426 (1516)
T ss_pred CchhhhhhhhhhhccccccccHHHHHHHHHHHHhhHHHHHHHHhhhhHHHhcCCCch---hhhhhHHHHHHHHhhhhhHH
Confidence 44444444421 2344455668889999999999999999999998888774321 22222234555555443333
Q ss_pred HHHH------hccHHHHHHHHhcCCCHHHHHHHHHHHH-HhhccchhhhhhcchhhhHHHhhcChHHHHHHhhcC-----
Q 006114 526 TMLE------EDGAIKALLAMVRSGNIDVIAQVARGLA-NFAKCESRAIVQGQRKGRSHLMEDSALEWLIANSKT----- 593 (660)
Q Consensus 526 ~~iv------~~G~V~~Lv~lL~s~~~~v~~~Al~aLa-nLA~~~~~~~aq~~~e~r~~Li~~G~v~~Lv~lL~s----- 593 (660)
..++ -..+|..-+++|.+++...+.+++..++ .|++ +..-.++-...++..|+.++++
T Consensus 427 ervc~~p~~v~~~vv~~~~~l~~cs~~~~~~~~~~ff~~~f~f----------rail~~fd~~d~l~~l~~~~~~~~~~~ 496 (1516)
T KOG1832|consen 427 ERVCALPLVVIHQVVKLAIELLDCSQDQARKNSALFFAAAFVF----------RAILDAFDAQDSLQKLLAILKDAASVT 496 (1516)
T ss_pred HHHhhccHHHHHHHHHHHHHHHhcchhhccchHHHHHHHHHHH----------HHHHHHHhhhhHHHHHHHHHHHHHHHh
Confidence 3322 2456677778888776665555444332 2221 1122233334556666555432
Q ss_pred --------------CCHHHHHHHHHHHHHh-----hcCCcc-HHHHHhcCcHHHHHHHHhcC-ChHHHHHHHH
Q 006114 594 --------------NSASTRRHVELALCHL-----AQNEDN-ARDFISRGGAKELVQISIES-SREDIRNLAK 645 (660)
Q Consensus 594 --------------~d~~vr~~Aa~AL~nL-----a~~~e~-~~~Ive~G~l~~Lv~lL~s~-s~~~ir~~A~ 645 (660)
.+.++-.+.|.||+.. ..--++ +..-+..|+++..+.-+..+ .+.+++..+.
T Consensus 497 ~~n~d~~l~e~~i~ss~Q~~~htC~alR~Yf~AHl~Ikve~~~k~~~~r~~~g~~~~~i~~~~~P~~~s~~~~ 569 (1516)
T KOG1832|consen 497 GANTDRSLPEVMISSSKQMAFHTCFALRQYFRAHLLIKVESIRKSRISRGGVGSSMKNIRAAYKPLDISNEAV 569 (1516)
T ss_pred ccCcCccccHHHhhhhhhhhhhhHHHHHHHHHHHHHHHHHhhhhhhcccCCCCccccccccCCCcchhhhhHH
Confidence 1234556777777643 221222 34444556666666555544 3334555554
No 407
>COG0419 SbcC ATPase involved in DNA repair [DNA replication, recombination, and repair]
Probab=73.09 E-value=2.4e+02 Score=34.92 Aligned_cols=16 Identities=38% Similarity=0.553 Sum_probs=10.0
Q ss_pred chHHHHHHHHHHHHHh
Q 006114 14 DYESLCRKLETQVDHL 29 (660)
Q Consensus 14 ~~~~~~~~~~~~~~~~ 29 (660)
|++.++..++.+++++
T Consensus 200 ~~~~~~~~~~~e~~~~ 215 (908)
T COG0419 200 DIEDLLEALEEELKEL 215 (908)
T ss_pred hhHHHHHHHHHHHHHH
Confidence 3444566677777766
No 408
>cd03569 VHS_Hrs_Vps27p VHS domain family, Hrs and Vps27p subfamily; composed of Hrs (Hepatocyte growth factor-regulated tyrosine kinase substrate) and its yeast homolog Vps27p (vacuolar protein sorting). The VHS domain, an essential part of Hrs/Vps27p, has a superhelical structure similar to the structure of ARM (Armadillo) repeats and is present at the N-termini of proteins. Hrs also contains a FYVE (Fab1p, YOTB, Vac1p, and EEA1) zinc finger domain C-terminal to VHS, as well as two coiled-coil domains. Hrs has been proposed to play a role in at least three vesicle trafficking events: exocytosis, endocytosis, and endosome to lysosome trafficking. Hrs is involved in promoting rapid recycling of endocytosed signaling receptors to the plasma membrane.
Probab=72.59 E-value=12 Score=35.56 Aligned_cols=70 Identities=16% Similarity=0.054 Sum_probs=60.5
Q ss_pred CHHHHHHHHccCCCHHHHHHHHHHHHHhhcC--chhHHHHHhcCccHHHHHhhcCCCCHHHHHHHHHHHHHHh
Q 006114 449 GLDALLLLLRTSQNTTILRVASGAIANLAMN--EMNQGLIMSRGGGQLLAKTASKTDDPQTLRMVAGALANLC 519 (660)
Q Consensus 449 gI~~Lv~LL~~s~d~~v~~~Aa~AL~nLA~~--~~n~~~Ive~g~I~~Ll~LL~~s~d~~v~~~Aa~aLanLa 519 (660)
++..|..-|. +.++.++..|..+|-.+..+ +.....|...+.+..|+.++....++.|+..++..|..++
T Consensus 42 a~ral~krl~-~~n~~vql~AL~LLe~~vkNCG~~fh~evas~~fl~~l~~l~~~~~~~~Vk~kil~li~~W~ 113 (142)
T cd03569 42 AMRALKKRLL-SKNPNVQLYALLLLESCVKNCGTHFHDEVASREFMDELKDLIKTTKNEEVRQKILELIQAWA 113 (142)
T ss_pred HHHHHHHHHc-CCChHHHHHHHHHHHHHHHHCCHHHHHHHhhHHHHHHHHHHHcccCCHHHHHHHHHHHHHHH
Confidence 5777888887 68999999999999988876 6678888889999999999987778899999999999887
No 409
>KOG1078 consensus Vesicle coat complex COPI, gamma subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=72.56 E-value=1.4e+02 Score=35.97 Aligned_cols=65 Identities=18% Similarity=0.275 Sum_probs=44.3
Q ss_pred HHHHHHhhCCCCHHHHHHHHHHHHHhhC-CchhHHHHHHcCCHHHHHHHHccCCCHHHHHHHHHHHHHhhcC
Q 006114 409 LPKILQLLTSEDPDVQIHAVKVVANLAA-EDINQEKIVEEGGLDALLLLLRTSQNTTILRVASGAIANLAMN 479 (660)
Q Consensus 409 I~~LV~LL~s~d~~vr~~Aa~aL~nLa~-~~en~~~Ive~GgI~~Lv~LL~~s~d~~v~~~Aa~AL~nLA~~ 479 (660)
.+.+=.++++....|...|+.++.++.. .+.. +.. ++..|-.+|. ++.+.+|-.|.+.|..+|+.
T Consensus 247 ~~fl~s~l~~K~emV~~EaArai~~l~~~~~r~---l~p--avs~Lq~fls-sp~~~lRfaAvRtLnkvAm~ 312 (865)
T KOG1078|consen 247 FPFLESCLRHKSEMVIYEAARAIVSLPNTNSRE---LAP--AVSVLQLFLS-SPKVALRFAAVRTLNKVAMK 312 (865)
T ss_pred HHHHHHHHhchhHHHHHHHHHHHhhccccCHhh---cch--HHHHHHHHhc-CcHHHHHHHHHHHHHHHHHh
Confidence 3344466677888888889988888766 2211 111 4555555554 88888888888999888865
No 410
>PF12830 Nipped-B_C: Sister chromatid cohesion C-terminus
Probab=72.35 E-value=1.1e+02 Score=30.39 Aligned_cols=63 Identities=25% Similarity=0.249 Sum_probs=50.3
Q ss_pred CCHHHHHHhhCCCCHHHHHHHHHHHHHhhC----CchhHHHHHHcCCHHHHHHHHccCCCHHHHHHHHHHHHHhhc
Q 006114 407 VGLPKILQLLTSEDPDVQIHAVKVVANLAA----EDINQEKIVEEGGLDALLLLLRTSQNTTILRVASGAIANLAM 478 (660)
Q Consensus 407 ggI~~LV~LL~s~d~~vr~~Aa~aL~nLa~----~~en~~~Ive~GgI~~Lv~LL~~s~d~~v~~~Aa~AL~nLA~ 478 (660)
..++.++.+..+++..++..|+.+|.-+.. +|.. .+|.|+.+.. ++++.++..|...+..+..
T Consensus 8 ryl~~Il~~~~~~~~~vr~~Al~~l~~il~qGLvnP~~--------cvp~lIAL~t-s~~~~ir~~A~~~l~~l~e 74 (187)
T PF12830_consen 8 RYLKNILELCLSSDDSVRLAALQVLELILRQGLVNPKQ--------CVPTLIALET-SPNPSIRSRAYQLLKELHE 74 (187)
T ss_pred HHHHHHHHHHhCCCHHHHHHHHHHHHHHHhcCCCChHH--------HHhHhhhhhC-CCChHHHHHHHHHHHHHHH
Confidence 346778888889999999999999965543 2321 4889999886 8999999999999999854
No 411
>PF06685 DUF1186: Protein of unknown function (DUF1186); InterPro: IPR010602 This family consists of several hypothetical bacterial proteins of around 250 residues in length and is found in several Chlamydia and Anabaena species. The function of this family is unknown.
Probab=72.34 E-value=89 Score=32.70 Aligned_cols=100 Identities=20% Similarity=0.154 Sum_probs=57.7
Q ss_pred CHHHHHHHHccC----------CCHHHHHHHHHHHHHhhcCchhHHHHHhcCccHHHHHhhcCCCCHHHHHHHHHHHHHH
Q 006114 449 GLDALLLLLRTS----------QNTTILRVASGAIANLAMNEMNQGLIMSRGGGQLLAKTASKTDDPQTLRMVAGALANL 518 (660)
Q Consensus 449 gI~~Lv~LL~~s----------~d~~v~~~Aa~AL~nLA~~~~n~~~Ive~g~I~~Ll~LL~~s~d~~v~~~Aa~aLanL 518 (660)
.+|.|+.+|... .+.....+|+.+|+.+ .+..++|+++.+++.++++ .....+ -.
T Consensus 32 i~P~Ll~~Le~a~~~~~e~~~~~~~~~~~~a~~LLaq~----------re~~A~~~li~l~~~~~~~--~~~l~G---D~ 96 (249)
T PF06685_consen 32 ITPELLKILEDAIERANELLDDEEYNLHFYALYLLAQF----------REERALPPLIRLFSQDDDF--LEDLFG---DF 96 (249)
T ss_pred hhHHHHHHHHHHHHhHHHhccCcchHHHHHHHHHHHHH----------hhhhhHHHHHHHHcCCcch--HHHHHc---ch
Confidence 478888887532 1122334455555543 3455889999999754432 111110 00
Q ss_pred hcChhHH--HHHHhccHHHHHHHHhcCCC--HHHHHHHHHHHHHhhccch
Q 006114 519 CGNEKLH--TMLEEDGAIKALLAMVRSGN--IDVIAQVARGLANFAKCES 564 (660)
Q Consensus 519 a~~~~~r--~~iv~~G~V~~Lv~lL~s~~--~~v~~~Al~aLanLA~~~~ 564 (660)
. ..... -..+..|-++.|..++.+++ .-++..|+.+|..++..++
T Consensus 97 ~-tE~l~~ilasv~~G~~~~L~~li~~~~~~~yvR~aa~~aL~~l~~~~~ 145 (249)
T PF06685_consen 97 I-TEDLPRILASVGDGDIEPLKELIEDPDADEYVRMAAISALAFLVHEGP 145 (249)
T ss_pred h-HhHHHHHHHHHhCCCHHHHHHHHhCCcHHHHHHHHHHHHHHHHHHcCC
Confidence 0 00111 12234578888999998765 4588999999999997654
No 412
>cd03568 VHS_STAM VHS domain family, STAM subfamily; members include STAM (Signal Transducing Adaptor Molecule), EAST (EGFR-associated protein with SH3 and TAM domains) and Hbp (Hrs-binding protein). Collectively, they are referred to as STAM. All STAMs have at their N-termini a VHS domain, which is involved in cytokine-mediated intracellular signal transduction and has a superhelical structure similar to the structure of ARM (Armadillo) repeats, followed by a SH3 (Src homology 3) domain, a well-established protein-protein interaction domain. At the C-termini of most vertebrate STAMS, an ITAM (Immunoreceptor Tyrosine-based Activation) motif is present, which mediates the binding of HRS (hepatocyte growth factor-regulated tyrosine kinase substrate) in endocytic and exocytic machineries.
Probab=72.30 E-value=13 Score=35.58 Aligned_cols=70 Identities=17% Similarity=0.107 Sum_probs=60.6
Q ss_pred CHHHHHHHHccCCCHHHHHHHHHHHHHhhcC--chhHHHHHhcCccHHHHHhhcCCCCHHHHHHHHHHHHHHh
Q 006114 449 GLDALLLLLRTSQNTTILRVASGAIANLAMN--EMNQGLIMSRGGGQLLAKTASKTDDPQTLRMVAGALANLC 519 (660)
Q Consensus 449 gI~~Lv~LL~~s~d~~v~~~Aa~AL~nLA~~--~~n~~~Ive~g~I~~Ll~LL~~s~d~~v~~~Aa~aLanLa 519 (660)
++..|..-|. +.++.++..|..+|-.++.+ +.....|...+.+..|..++....++.|+..++..|..++
T Consensus 38 a~ral~KRl~-~~n~~v~l~AL~LLe~~vkNCG~~fh~evask~Fl~eL~kl~~~~~~~~Vk~kil~li~~W~ 109 (144)
T cd03568 38 CLKAIMKRLN-HKDPNVQLRALTLLDACAENCGKRFHQEVASRDFTQELKKLINDRVHPTVKEKLREVVKQWA 109 (144)
T ss_pred HHHHHHHHHc-CCCHHHHHHHHHHHHHHHHHCCHHHHHHHhhHHHHHHHHHHhcccCCHHHHHHHHHHHHHHH
Confidence 4777778887 78999999999999999876 6678888889999999999987678899999999998887
No 413
>KOG2956 consensus CLIP-associating protein [General function prediction only]
Probab=71.87 E-value=63 Score=36.64 Aligned_cols=142 Identities=15% Similarity=0.092 Sum_probs=84.7
Q ss_pred HHHHHhhCC-CCHHHHHHHHHHHHHhhCCchhHHHHHHcCCHHHHHHHHccCCCHHHHHHHHHHHHHhhcCchhHHHHHh
Q 006114 410 PKILQLLTS-EDPDVQIHAVKVVANLAAEDINQEKIVEEGGLDALLLLLRTSQNTTILRVASGAIANLAMNEMNQGLIMS 488 (660)
Q Consensus 410 ~~LV~LL~s-~d~~vr~~Aa~aL~nLa~~~en~~~Ive~GgI~~Lv~LL~~s~d~~v~~~Aa~AL~nLA~~~~n~~~Ive 488 (660)
..++..|.. .+...+.-|+++|..++.+...+-.=-..-+|..++..-.++.+..++..+=.|+.-++.+.+.+..++
T Consensus 332 ~~l~EvL~d~~~~~~k~laLrvL~~ml~~Q~~~l~DstE~ai~K~Leaa~ds~~~v~~~Aeed~~~~las~~P~~~I~~- 410 (516)
T KOG2956|consen 332 LLLLEVLSDSEDEIIKKLALRVLREMLTNQPARLFDSTEIAICKVLEAAKDSQDEVMRVAEEDCLTTLASHLPLQCIVN- 410 (516)
T ss_pred HHHHHHHccchhhHHHHHHHHHHHHHHHhchHhhhchHHHHHHHHHHHHhCCchhHHHHHHHHHHHHHHhhCchhHHHH-
Confidence 345566664 788899999999999888543322211222466777777744444444444455666676655444332
Q ss_pred cCccHHHHHhhcCCCCHHHHHHHHHHHHHHhcC--hhHHHHHHhccHHHHHHHHhcCCCHHHHHHHHHHHHHhh
Q 006114 489 RGGGQLLAKTASKTDDPQTLRMVAGALANLCGN--EKLHTMLEEDGAIKALLAMVRSGNIDVIAQVARGLANFA 560 (660)
Q Consensus 489 ~g~I~~Ll~LL~~s~d~~v~~~Aa~aLanLa~~--~~~r~~iv~~G~V~~Lv~lL~s~~~~v~~~Al~aLanLA 560 (660)
+..++-. .|......+...+..++.. .+--..++ ....|.++....+....|+..|+.||..+.
T Consensus 411 ------i~~~Ilt-~D~~~~~~~iKm~Tkl~e~l~~EeL~~ll-~diaP~~iqay~S~SS~VRKtaVfCLVamv 476 (516)
T KOG2956|consen 411 ------ISPLILT-ADEPRAVAVIKMLTKLFERLSAEELLNLL-PDIAPCVIQAYDSTSSTVRKTAVFCLVAMV 476 (516)
T ss_pred ------HhhHHhc-CcchHHHHHHHHHHHHHhhcCHHHHHHhh-hhhhhHHHHHhcCchHHhhhhHHHhHHHHH
Confidence 2222222 2333444455566666621 11111122 357888999999999999999999997765
No 414
>PF14662 CCDC155: Coiled-coil region of CCDC155
Probab=71.11 E-value=1.2e+02 Score=30.49 Aligned_cols=78 Identities=21% Similarity=0.198 Sum_probs=35.2
Q ss_pred HHhhhhhhhHHHHhhhhHHHHHHHHHhhh-------hhhhhhhhhHHHHHHHHHHHhhhhhhhhhhhhhhHHHHHHhhHH
Q 006114 105 MRNLVTRSEFLEKENAHLELEVEKILGEL-------NHQKDQNNLKREKIVQLEISLKNSKQQQLDNSSYQKVLADTTQM 177 (660)
Q Consensus 105 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 177 (660)
...|.-..+.++..|++|-.|+-.|.+.+ +.-|. +.+++..|-..++.+.-..--...+.+-+.+++|.
T Consensus 24 n~kL~~~ve~~ee~na~L~~e~~~L~~q~~s~Qqal~~aK~----l~eEledLk~~~~~lEE~~~~L~aq~rqlEkE~q~ 99 (193)
T PF14662_consen 24 NAKLQRSVETAEEGNAQLAEEITDLRKQLKSLQQALQKAKA----LEEELEDLKTLAKSLEEENRSLLAQARQLEKEQQS 99 (193)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33444445555555555555555555444 22222 22233333333333332222223344456666666
Q ss_pred HHHHHHHHH
Q 006114 178 YEKKITELI 186 (660)
Q Consensus 178 ~~~~~~~l~ 186 (660)
+..+|..|.
T Consensus 100 L~~~i~~Lq 108 (193)
T PF14662_consen 100 LVAEIETLQ 108 (193)
T ss_pred HHHHHHHHH
Confidence 666666544
No 415
>COG5185 HEC1 Protein involved in chromosome segregation, interacts with SMC proteins [Cell division and chromosome partitioning]
Probab=70.98 E-value=1.9e+02 Score=32.85 Aligned_cols=66 Identities=12% Similarity=0.095 Sum_probs=42.9
Q ss_pred HHHHHHHHHhHHHHHHHHHHHHHHHHHhhhhccHHHHHHHHHHHHHHHHhhhhHHHHHHHHhhCCC
Q 006114 290 LKETRQLHESAVYEVQTLKSEYKNLLEEKETMSDELQAARQRLLVEEKQRKAIEYELVKLKKTAPE 355 (660)
Q Consensus 290 Le~e~~~~e~~e~E~~~lks~l~~l~~~~~~~~eel~~~~k~l~~e~~~rkkLe~E~~~l~~~l~~ 355 (660)
.+.+.++++.+--|+.+..++...|..+-...+=|+...-+.+++-+.+=..+-.++..-.+++.+
T Consensus 370 fe~mn~Ere~L~reL~~i~~~~~~L~k~V~~~~leaq~~~~slek~~~~~~sl~~~i~~~~~~i~~ 435 (622)
T COG5185 370 FELMNQEREKLTRELDKINIQSDKLTKSVKSRKLEAQGIFKSLEKTLRQYDSLIQNITRSRSQIGH 435 (622)
T ss_pred HHHHHHHHHHHHHHHHHhcchHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHhcccHHHHhh
Confidence 567788888999899988888888887666665555555555555554444444444444444433
No 416
>KOG1967 consensus DNA repair/transcription protein Mms19 [Replication, recombination and repair; Transcription]
Probab=70.59 E-value=30 Score=41.99 Aligned_cols=150 Identities=14% Similarity=0.021 Sum_probs=98.1
Q ss_pred CCHHHHHHHHccCCCHHHHHHHHHHHHHhhcCchhHHHHHh-cCccHHHHHhhcCCCCHHHHHHHHHHHHHHh-cChhHH
Q 006114 448 GGLDALLLLLRTSQNTTILRVASGAIANLAMNEMNQGLIMS-RGGGQLLAKTASKTDDPQTLRMVAGALANLC-GNEKLH 525 (660)
Q Consensus 448 GgI~~Lv~LL~~s~d~~v~~~Aa~AL~nLA~~~~n~~~Ive-~g~I~~Ll~LL~~s~d~~v~~~Aa~aLanLa-~~~~~r 525 (660)
..+|.|+..+. ..+..++-.-..+|.+.-.+-+-+..+-. ...+|.|+..|+ -+|+.++..+..+|..+. ..+...
T Consensus 867 ~ivP~l~~~~~-t~~~~~K~~yl~~LshVl~~vP~~vllp~~~~LlPLLLq~Ls-~~D~~v~vstl~~i~~~l~~~~tL~ 944 (1030)
T KOG1967|consen 867 DIVPILVSKFE-TAPGSQKHNYLEALSHVLTNVPKQVLLPQFPMLLPLLLQALS-MPDVIVRVSTLRTIPMLLTESETLQ 944 (1030)
T ss_pred hhHHHHHHHhc-cCCccchhHHHHHHHHHHhcCCHHhhccchhhHHHHHHHhcC-CCccchhhhHhhhhhHHHHhccccc
Confidence 46899999987 55556677777788877666222322222 556788888885 588999888888887665 333332
Q ss_pred HHHHhccHHHHHHHHhcCCC---HHHHHHHHHHHHHhhccchhhhhhcchhhhHHHhhcChHHHHHHhhcCCCHHHHHHH
Q 006114 526 TMLEEDGAIKALLAMVRSGN---IDVIAQVARGLANFAKCESRAIVQGQRKGRSHLMEDSALEWLIANSKTNSASTRRHV 602 (660)
Q Consensus 526 ~~iv~~G~V~~Lv~lL~s~~---~~v~~~Al~aLanLA~~~~~~~aq~~~e~r~~Li~~G~v~~Lv~lL~s~d~~vr~~A 602 (660)
..=+ .-.||.++.+=.+.+ ..|+..|+.+|..|+..-|. .+-......++..|++.|.++---||..|
T Consensus 945 t~~~-~Tlvp~lLsls~~~~n~~~~VR~~ALqcL~aL~~~~P~--------~~l~~fr~~Vl~al~k~LdDkKRlVR~eA 1015 (1030)
T KOG1967|consen 945 TEHL-STLVPYLLSLSSDNDNNMMVVREDALQCLNALTRRLPT--------KSLLSFRPLVLRALIKILDDKKRLVRKEA 1015 (1030)
T ss_pred hHHH-hHHHHHHHhcCCCCCcchhHHHHHHHHHHHHHhccCCC--------cccccccHHHHHHhhhccCcHHHHHHHHH
Confidence 2222 246677776655544 56889999999999864331 11112235577788888887777788888
Q ss_pred HHHHHH
Q 006114 603 ELALCH 608 (660)
Q Consensus 603 a~AL~n 608 (660)
+.+=.+
T Consensus 1016 v~tR~~ 1021 (1030)
T KOG1967|consen 1016 VDTRQN 1021 (1030)
T ss_pred HHHhhh
Confidence 766443
No 417
>PF04156 IncA: IncA protein; InterPro: IPR007285 Chlamydia trachomatis is an obligate intracellular bacterium that develops within a parasitophorous vacuole termed an inclusion. The inclusion is nonfusogenic with lysosomes but intercepts lipids from a host cell exocytic pathway. Initiation of chlamydial development is concurrent with modification of the inclusion membrane by a set of C. trachomatis-encoded proteins collectively designated Incs. One of these Incs, IncA (Inclusion membrane protein A), is functionally associated with the homotypic fusion of inclusions [].
Probab=70.43 E-value=1.1e+02 Score=29.96 Aligned_cols=45 Identities=20% Similarity=0.318 Sum_probs=23.9
Q ss_pred HHHHhhHHHHHHHHHHHHHHHHHHhhhhchHHHHHHHHHHHhhhh
Q 006114 170 VLADTTQMYEKKITELIKQLEIEHARSEGAEEQVDTMKKLISDNQ 214 (660)
Q Consensus 170 ~~~~~~~~~~~~~~~l~~~l~~e~~~~~~~~~~~~~l~~~l~~~~ 214 (660)
.+......+.+++.++.+.+.+..........++..+.....+++
T Consensus 134 ~l~~~~~~~~~e~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ 178 (191)
T PF04156_consen 134 SLDESIKELEKEIRELQKELQDSREEVQELRSQLERLQENLQQLE 178 (191)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 444555556666666665555555554555555555544444444
No 418
>KOG2008 consensus BTK-associated SH3-domain binding protein SAB [Signal transduction mechanisms]
Probab=70.38 E-value=80 Score=33.91 Aligned_cols=79 Identities=24% Similarity=0.176 Sum_probs=60.4
Q ss_pred HHHHHHhhHHHHHHHHHHHHhhhhhhhh--hhhhhhHHhHHHHHHHhhhhhccccchhHH---HHHHHHHHHHHHHHHhH
Q 006114 226 TYQKALADTTQLYEKKIAELNKKLEDEH--ACFEGAVEQLDMVKKLLSDYQNSNQGQKEV---HELCVKLKETRQLHESA 300 (660)
Q Consensus 226 ~~~~~l~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~---~~Lk~~Le~e~~~~e~~ 300 (660)
.|-+++++..+.||-|+.|-.-++|-.. ++|+++-+-|..+|...|=.+.+-....+. ......|+-.++.-..+
T Consensus 60 k~~k~I~ksrpf~elk~~er~~r~e~QkAa~~FeRat~vl~~AkeqVsl~~~sL~~~~~~~~~~~~~evlnh~~qrV~Ea 139 (426)
T KOG2008|consen 60 KIGKAIEKSRPFWELKRVERQARLEAQKAAQDFERATEVLRAAKEQVSLAEQSLLEDDKRQFDSAWQEVLNHATQRVMEA 139 (426)
T ss_pred HHHHHHhhcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcchhhhhHHHHHHHHHHHHHHHHHH
Confidence 3668889999999999999888888765 589999999999999988877776644443 55666666666666666
Q ss_pred HHHH
Q 006114 301 VYEV 304 (660)
Q Consensus 301 e~E~ 304 (660)
|+|-
T Consensus 140 E~e~ 143 (426)
T KOG2008|consen 140 EQEK 143 (426)
T ss_pred HHHH
Confidence 6553
No 419
>PF15397 DUF4618: Domain of unknown function (DUF4618)
Probab=70.10 E-value=1.5e+02 Score=31.22 Aligned_cols=94 Identities=23% Similarity=0.277 Sum_probs=49.7
Q ss_pred HHHHhhhhhhhHHHHhhhhHHHHHHHHHh--------hhhhhhhhhhhHHHHHHHHHHHhhhhhhhhhhhhhhHHHHHHh
Q 006114 103 ESMRNLVTRSEFLEKENAHLELEVEKILG--------ELNHQKDQNNLKREKIVQLEISLKNSKQQQLDNSSYQKVLADT 174 (660)
Q Consensus 103 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 174 (660)
.+|..|.....||.+.|-.|-.+|...-. -|+++--..+.+. -| ..+...+++ .-..+|...
T Consensus 6 ~sl~el~~h~~~L~~~N~~L~~~IqdtE~st~~~Vr~lLqqy~~~~~~i~----~l----e~~~~~~l~--~ak~eLqe~ 75 (258)
T PF15397_consen 6 TSLQELKKHEDFLTKLNKELIKEIQDTEDSTALKVRKLLQQYDIYRTAID----IL----EYSNHKQLQ--QAKAELQEW 75 (258)
T ss_pred HHHHHHHHHHHHHHHhhHHHHHHHHhHHhhHHHHHHHHHHHHHHHHHHHH----HH----HccChHHHH--HHHHHHHHH
Confidence 34556778888999999998888765533 2333333333221 11 000000000 001144455
Q ss_pred hHHHHHHHHHHHHHHHHHHhhhhchHHHHHHH
Q 006114 175 TQMYEKKITELIKQLEIEHARSEGAEEQVDTM 206 (660)
Q Consensus 175 ~~~~~~~~~~l~~~l~~e~~~~~~~~~~~~~l 206 (660)
....+.++..|..+++.-.++-..+.++|+.|
T Consensus 76 eek~e~~l~~Lq~ql~~l~akI~k~~~el~~L 107 (258)
T PF15397_consen 76 EEKEESKLSKLQQQLEQLDAKIQKTQEELNFL 107 (258)
T ss_pred HHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 55556666666666666666666666666544
No 420
>PF09304 Cortex-I_coil: Cortexillin I, coiled coil; InterPro: IPR015383 This domain is predominantly found in the actin-bundling protein cortexillin I from Dictyostelium discoideum (Slime mold). The domain has a structure consisting of an 18-heptad-repeat alpha-helical coiled-coil, and is a prerequisite for the assembly of Cortexillin I []. ; PDB: 1D7M_A.
Probab=70.03 E-value=87 Score=28.48 Aligned_cols=27 Identities=26% Similarity=0.192 Sum_probs=15.8
Q ss_pred hHHHHHHHHHHHHHHHHHHhhhhchHH
Q 006114 175 TQMYEKKITELIKQLEIEHARSEGAEE 201 (660)
Q Consensus 175 ~~~~~~~~~~l~~~l~~e~~~~~~~~~ 201 (660)
+..++.+|.++++.+++++--+.-++-
T Consensus 60 ~~eLqaki~ea~~~le~eK~ak~~l~~ 86 (107)
T PF09304_consen 60 IAELQAKIDEARRNLEDEKQAKLELES 86 (107)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 445666666777777666655533333
No 421
>KOG2933 consensus Uncharacterized conserved protein [Function unknown]
Probab=69.95 E-value=29 Score=37.25 Aligned_cols=104 Identities=15% Similarity=0.091 Sum_probs=64.0
Q ss_pred ccHHHHHhhcCCCCHHHHHHHHHHHHHHhcChhHHHHHHhccHHHHHHHHhcCCCHHHHHHHHHHHHHhhccchhhhhhc
Q 006114 491 GGQLLAKTASKTDDPQTLRMVAGALANLCGNEKLHTMLEEDGAIKALLAMVRSGNIDVIAQVARGLANFAKCESRAIVQG 570 (660)
Q Consensus 491 ~I~~Ll~LL~~s~d~~v~~~Aa~aLanLa~~~~~r~~iv~~G~V~~Lv~lL~s~~~~v~~~Al~aLanLA~~~~~~~aq~ 570 (660)
+|..++.-+++ ....|.+.|+.+++-+..+-.....-.-.+.+-.|+.--..++.-++..|-.+|..+...-
T Consensus 130 vii~vvkslKN-lRS~VsraA~~t~~difs~ln~~i~~~ld~lv~~Ll~ka~~dnrFvreda~kAL~aMV~~v------- 201 (334)
T KOG2933|consen 130 VIIAVVKSLKN-LRSAVSRAACMTLADIFSSLNNSIDQELDDLVTQLLHKASQDNRFVREDAEKALVAMVNHV------- 201 (334)
T ss_pred HHHHHHHHhcC-hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcccchHHHHHHHHHHHHHHhcc-------
Confidence 45666666654 6668888888888888632222111111233333333233445667888888887766432
Q ss_pred chhhhHHHhhcChHHHHHHhhcCCCHHHHHHHHHHHHHhh
Q 006114 571 QRKGRSHLMEDSALEWLIANSKTNSASTRRHVELALCHLA 610 (660)
Q Consensus 571 ~~e~r~~Li~~G~v~~Lv~lL~s~d~~vr~~Aa~AL~nLa 610 (660)
.-.-+++.|+..+.+.++.++..++..+.++.
T Consensus 202 --------tp~~~L~~L~~~~~~~n~r~r~~a~~~~~~~v 233 (334)
T KOG2933|consen 202 --------TPQKLLRKLIPILQHSNPRVRAKAALCFSRCV 233 (334)
T ss_pred --------ChHHHHHHHHHHHhhhchhhhhhhhccccccc
Confidence 12346778888888889999988877766553
No 422
>KOG1566 consensus Conserved protein Mo25 [Function unknown]
Probab=69.86 E-value=1.7e+02 Score=31.76 Aligned_cols=206 Identities=11% Similarity=0.046 Sum_probs=136.9
Q ss_pred HHHhCCCHHHHHHhhCCCCHHHHHHHHHHHHHhhC-CchhHHHHHHc--CCHHHHHHHHccCCC-HHHHHHHHHHHHHhh
Q 006114 402 KICDEVGLPKILQLLTSEDPDVQIHAVKVVANLAA-EDINQEKIVEE--GGLDALLLLLRTSQN-TTILRVASGAIANLA 477 (660)
Q Consensus 402 ~I~e~ggI~~LV~LL~s~d~~vr~~Aa~aL~nLa~-~~en~~~Ive~--GgI~~Lv~LL~~s~d-~~v~~~Aa~AL~nLA 477 (660)
.+..+|.++.|+..+...+-+.+..++.+..++-. .-.++...++. .-...+..++....+ +++.-.+...+..+.
T Consensus 74 ef~~~~~l~~lI~~l~~l~fE~rkD~~~ifnnllr~qvgtr~~tv~Yl~t~~e~~~~lv~~~~~~~~iaL~cg~mlrEci 153 (342)
T KOG1566|consen 74 EFYNADVLSLLIQHLPKLEFESRKDVLQIFNNLLRRQVGTRSPTVEYLETNPEILDNLVKGYENTPEIALTCGNMLRECI 153 (342)
T ss_pred HHHhCCchHHHHHhhhcccchhhhHHHHHHHHHHHhhcCCcchHHHHHHhCHHHHHHHHhhhccchHHHHHHHHHHHHHH
Confidence 56778899999999998888888888888877765 22222222221 113334444443443 778777778888888
Q ss_pred cCchhHHHHHhcCccHHHHHhhcCCCCHHHHHHHHHHHHHHh-cChhHHHHHHhcc---HHHH-HHHHhcCCCHHHHHHH
Q 006114 478 MNEMNQGLIMSRGGGQLLAKTASKTDDPQTLRMVAGALANLC-GNEKLHTMLEEDG---AIKA-LLAMVRSGNIDVIAQV 552 (660)
Q Consensus 478 ~~~~n~~~Ive~g~I~~Ll~LL~~s~d~~v~~~Aa~aLanLa-~~~~~r~~iv~~G---~V~~-Lv~lL~s~~~~v~~~A 552 (660)
.++...+.|....-+......... ++-++...|..+...+. ........+.... .++- --.++.+.+--++..+
T Consensus 154 rhe~LakiiL~s~~~~~FF~~vq~-p~FdiasdA~~tfK~llt~Hk~~vaEfl~~n~d~ff~e~~~~Ll~s~Nyvtkrqs 232 (342)
T KOG1566|consen 154 RHEFLAKIILESTNFEKFFLYVQL-PNFDIASDAFSTFKELLTRHKSVVAEFLIRNYDNFFAEVYEKLLRSENYVTKRQS 232 (342)
T ss_pred hhHHHHHHHHcchhHHHHHHHHhc-cchHHHHHHHHHHHHHHHHhHHHHHHHHHhChhhhHHHHHHHHhcccceehHHHH
Confidence 888888888887776665555543 45567777776666654 2233333333322 2233 4566778888889999
Q ss_pred HHHHHHhhccchhhhhhcchhhhHHHhhcChHHHHHHhhcCCCHHHHHHHHHHHHHhhcCC
Q 006114 553 ARGLANFAKCESRAIVQGQRKGRSHLMEDSALEWLIANSKTNSASTRRHVELALCHLAQNE 613 (660)
Q Consensus 553 l~aLanLA~~~~~~~aq~~~e~r~~Li~~G~v~~Lv~lL~s~d~~vr~~Aa~AL~nLa~~~ 613 (660)
...++.+-.+.+.. ......+.+...+..++.+|.+++..++-.|--...-...++
T Consensus 233 ~kllg~llldr~N~-----~~M~kYiss~enLKlmM~llrdkskniQ~eAFhvFKvfvAnp 288 (342)
T KOG1566|consen 233 LKLLGELLLDRSNS-----AVMTKYISSPENLKLMMNLLRDKSKNIQLEAFHVFKVFVANP 288 (342)
T ss_pred HHhHHHHHhCCCcH-----HHHHHHhcCHHHHHHHHHHhhCccccchHHHHHHHHHHhcCC
Confidence 99999887554321 123344555678889999999999999988888887777655
No 423
>PF06785 UPF0242: Uncharacterised protein family (UPF0242); InterPro: IPR009623 This is a group of proteins of unknown function.
Probab=69.78 E-value=94 Score=33.68 Aligned_cols=75 Identities=17% Similarity=0.274 Sum_probs=48.8
Q ss_pred HhhHHHHHHHHHHHHHHHHHHhhhhchHHHHHHHHHHHhhhhhhHHHHhhhhhHHHHHHhhHHHHHHHH---HHHHhhhh
Q 006114 173 DTTQMYEKKITELIKQLEIEHARSEGAEEQVDTMKKLISDNQKSIEQYEMENSTYQKALADTTQLYEKK---IAELNKKL 249 (660)
Q Consensus 173 ~~~~~~~~~~~~l~~~l~~e~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~---~~~~~~~~ 249 (660)
-++..+..|=..|.-+|++=...+..++++...|-+-|++.-.+.+ .=|+.||.++..-..|.-|+ |+.|.-++
T Consensus 134 ~li~~~~EEn~~lqlqL~~l~~e~~Ekeeesq~LnrELaE~layqq---~L~~eyQatf~eq~~ml~kRQ~yI~~LEsKV 210 (401)
T PF06785_consen 134 GLIRHLREENQCLQLQLDALQQECGEKEEESQTLNRELAEALAYQQ---ELNDEYQATFVEQHSMLDKRQAYIGKLESKV 210 (401)
T ss_pred HHHHHHHHHHHHHHHhHHHHHHHHhHhHHHHHHHHHHHHHHHHHHH---HHHHHhhcccccchhhhHHHHHHHHHHHHHH
Confidence 3444455555556666666677778888888888888887765443 77888988887655554443 44444444
Q ss_pred h
Q 006114 250 E 250 (660)
Q Consensus 250 ~ 250 (660)
-
T Consensus 211 q 211 (401)
T PF06785_consen 211 Q 211 (401)
T ss_pred H
Confidence 3
No 424
>PF07106 TBPIP: Tat binding protein 1(TBP-1)-interacting protein (TBPIP); InterPro: IPR010776 This family consists of several eukaryotic TBP-1 interacting protein (TBPIP) sequences. TBP-1 has been demonstrated to interact with the human immunodeficiency virus type 1 (HIV-1) viral protein Tat, then modulate the essential replication process of HIV. In addition, TBP-1 has been shown to be a component of the 26S proteasome, a basic multiprotein complex that degrades ubiquitinated proteins in an ATP-dependent fashion. Human TBPIP interacts with human TBP-1 then modulates the inhibitory action of human TBP-1 on HIV-Tat-mediated transactivation [].
Probab=69.35 E-value=54 Score=31.85 Aligned_cols=62 Identities=21% Similarity=0.326 Sum_probs=41.8
Q ss_pred HhhHHHHHHHHHHHHHHHHHHhhhhchHHHHHHHHHHHhhhhhhHHHHhhhhhHHHHHHhhHHHHHHHHHHHHhhhhh
Q 006114 173 DTTQMYEKKITELIKQLEIEHARSEGAEEQVDTMKKLISDNQKSIEQYEMENSTYQKALADTTQLYEKKIAELNKKLE 250 (660)
Q Consensus 173 ~~~~~~~~~~~~l~~~l~~e~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~ 250 (660)
.+...+..+|.+|..++.......+.++.++..|...+...+ |.+....++++|.+|..+|+
T Consensus 72 eel~~ld~ei~~L~~el~~l~~~~k~l~~eL~~L~~~~t~~e----------------l~~~i~~l~~e~~~l~~kL~ 133 (169)
T PF07106_consen 72 EELAELDAEIKELREELAELKKEVKSLEAELASLSSEPTNEE----------------LREEIEELEEEIEELEEKLE 133 (169)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHH----------------HHHHHHHHHHHHHHHHHHHH
Confidence 456667777888888888888888888888887777765544 34444445555555555555
No 425
>PF05911 DUF869: Plant protein of unknown function (DUF869); InterPro: IPR008587 This family consists of a number of sequences found in plants. The function of this family is unknown.
Probab=69.34 E-value=2.7e+02 Score=33.92 Aligned_cols=82 Identities=27% Similarity=0.318 Sum_probs=50.3
Q ss_pred hHHHHHHhhHHHHHHHHHHHHHHHHHHhhhhchHHHHHHHHHHHhhhhhhHHHHhhhhhHHHHHHhhHHHHHHHHHHHHh
Q 006114 167 YQKVLADTTQMYEKKITELIKQLEIEHARSEGAEEQVDTMKKLISDNQKSIEQYEMENSTYQKALADTTQLYEKKIAELN 246 (660)
Q Consensus 167 ~~~~~~~~~~~~~~~~~~l~~~l~~e~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~ 246 (660)
..+.+....+..|..|.+|..+|+.-...+..++.++.-++.+...+.-...-.+.|+.+ .-.||..|.
T Consensus 618 ~lE~~~~qL~E~E~~L~eLq~eL~~~keS~s~~E~ql~~~~e~~e~le~~~~~~e~E~~~-----------l~~Ki~~Le 686 (769)
T PF05911_consen 618 QLESLKNQLKESEQKLEELQSELESAKESNSLAETQLKAMKESYESLETRLKDLEAEAEE-----------LQSKISSLE 686 (769)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHH-----------HHHHHHHHH
Confidence 344555556677777777777777777777777777776655555444211111122222 335788888
Q ss_pred hhhhhhhhhhhhh
Q 006114 247 KKLEDEHACFEGA 259 (660)
Q Consensus 247 ~~~~~~~~~~~~~ 259 (660)
..|++|++.+...
T Consensus 687 ~Ele~er~~~~e~ 699 (769)
T PF05911_consen 687 EELEKERALSEEL 699 (769)
T ss_pred HHHHHHHhcchhh
Confidence 8998886665544
No 426
>PF10168 Nup88: Nuclear pore component; InterPro: IPR019321 Nup88 can be divided into two structural domains; the N-terminal two-thirds of the protein have no obvious structural motifs. It is, however, where it binds to Nup98; one of the components of the nuclear pore. The C-terminal end is a predicted coiled-coil domain []. Nup88 is over expressed in tumour cells [].
Probab=69.12 E-value=2.7e+02 Score=33.75 Aligned_cols=39 Identities=31% Similarity=0.323 Sum_probs=25.1
Q ss_pred hHHHHHHhhhhhhhHHHHhhhhHHHHHHHHHhhhhhhhh
Q 006114 100 SYDESMRNLVTRSEFLEKENAHLELEVEKILGELNHQKD 138 (660)
Q Consensus 100 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 138 (660)
+..+.-..|..|+|....--..|..=+++++..++.+..
T Consensus 590 ~l~~~ae~LaeR~e~a~d~Qe~L~~R~~~vl~~l~~~~P 628 (717)
T PF10168_consen 590 SLRESAEKLAERYEEAKDKQEKLMKRVDRVLQLLNSQLP 628 (717)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCC
Confidence 344445566677777777777777777777777755443
No 427
>TIGR01843 type_I_hlyD type I secretion membrane fusion protein, HlyD family. Type I secretion is an ABC transport process that exports proteins, without cleavage of any signal sequence, from the cytosol to extracellular medium across both inner and outer membranes. The secretion signal is found in the C-terminus of the transported protein. This model represents the adaptor protein between the ATP-binding cassette (ABC) protein of the inner membrane and the outer membrane protein, and is called the membrane fusion protein. This model selects a subfamily closely related to HlyD; it is defined narrowly and excludes, for example, colicin V secretion protein CvaA and multidrug efflux proteins.
Probab=68.82 E-value=1.8e+02 Score=31.78 Aligned_cols=73 Identities=22% Similarity=0.175 Sum_probs=34.6
Q ss_pred HHHHHHHHHhhhhhhhhhhhhhhHHhHHHHHHHhhhhhccccchhHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHH
Q 006114 237 LYEKKIAELNKKLEDEHACFEGAVEQLDMVKKLLSDYQNSNQGQKEVHELCVKLKETRQLHESAVYEVQTLKSEYK 312 (660)
Q Consensus 237 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~Lk~~Le~e~~~~e~~e~E~~~lks~l~ 312 (660)
.|...|+.+..+++.-.+....++++++..++|+..+-. ...++...+..+.........++.++..++.++.
T Consensus 155 ~~~~~i~~~~~~l~~~~~~l~~~~~~~~~~~~L~~~g~i---s~~~~~~~~~~~~~~~~~l~~~~~~l~~~~~~l~ 227 (423)
T TIGR01843 155 QLEAELAGLQAQLQALRQQLEVISEELEARRKLKEKGLV---SRLELLELERERAEAQGELGRLEAELEVLKRQID 227 (423)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCC---CHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHH
Confidence 344455555555555555555566666666666554222 2333333444444444444444444444444443
No 428
>PF02841 GBP_C: Guanylate-binding protein, C-terminal domain; InterPro: IPR003191 Guanylate-binding protein is a GTPase that is induced by interferon (IFN)-gamma. GTPases induced by IFN-gamma are key to the protective immunity against microbial and viral pathogens. These GTPases are classified into three groups: the small 47-kd GTPases, the Mx proteins, and the large 65- to 67-kd GTPases. Guanylate-binding proteins (GBP) fall into the last class. In humans, there are seven GBPs (hGBP1-7) []. Structurally, hGBP1 consists of two domains: a compact globular N-terminal domain harbouring the GTPase function (IPR015894 from INTERPRO), and an alpha-helical finger-like C-terminal domain. Human GBP1 is secreted from cells without the need of a leader peptide, and has been shown to exhibit antiviral activity against Vesicular stomatitis virus and Encephalomyocarditis virus, as well as being able to regulate the inhibition of proliferation and invasion of endothelial cells in response to IFN-gamma [].; GO: 0003924 GTPase activity, 0005525 GTP binding; PDB: 1DG3_A 2D4H_A 2B8W_B 2B92_A 2BC9_A 1F5N_A.
Probab=68.66 E-value=1.7e+02 Score=31.21 Aligned_cols=71 Identities=24% Similarity=0.452 Sum_probs=44.5
Q ss_pred HHHHhhHHHHHHHHHHHHHHHHHHhhhhchHHHHHHHHHHHhhhhhhHHHHhhhhhHHHHHHhhHHHHHHHHHHHHhhhh
Q 006114 170 VLADTTQMYEKKITELIKQLEIEHARSEGAEEQVDTMKKLISDNQKSIEQYEMENSTYQKALADTTQLYEKKIAELNKKL 249 (660)
Q Consensus 170 ~~~~~~~~~~~~~~~l~~~l~~e~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~ 249 (660)
.+++++..+.+.+.+-.+.++.+..+...++.+...++..+.... ..+.+....|+..+..|..++
T Consensus 187 ~~~~~ilq~d~~L~~~ek~~~~~~~k~e~~e~e~~~l~e~~~~~~--------------~~le~~~~~~ee~~~~L~ekm 252 (297)
T PF02841_consen 187 SMENSILQADQQLTEKEKEIEEEQAKAEAAEKEKEKLEEKQKEQE--------------QMLEQQERSYEEHIKQLKEKM 252 (297)
T ss_dssp HHHHHHHHH-TTS-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--------------HHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--------------HHHHHHHHHHHHHHHHHHHHH
Confidence 444455555555555556666666666667666666665544443 345566678888888888888
Q ss_pred hhhhh
Q 006114 250 EDEHA 254 (660)
Q Consensus 250 ~~~~~ 254 (660)
+.++.
T Consensus 253 e~e~~ 257 (297)
T PF02841_consen 253 EEERE 257 (297)
T ss_dssp HHHHH
T ss_pred HHHHH
Confidence 87665
No 429
>PF10363 DUF2435: Protein of unknown function (DUF2435)
Probab=68.44 E-value=18 Score=31.88 Aligned_cols=67 Identities=13% Similarity=0.017 Sum_probs=51.0
Q ss_pred HHHHHHHccCCCHHHHHHHHHHHHHhhcCchhHHHHHhcCccHHHHHhhcCCCCHHHHHHHHHHHHHHhc
Q 006114 451 DALLLLLRTSQNTTILRVASGAIANLAMNEMNQGLIMSRGGGQLLAKTASKTDDPQTLRMVAGALANLCG 520 (660)
Q Consensus 451 ~~Lv~LL~~s~d~~v~~~Aa~AL~nLA~~~~n~~~Ive~g~I~~Ll~LL~~s~d~~v~~~Aa~aLanLa~ 520 (660)
...+.-|. ++.+.+|.++...|+.|..... ...+...+++..++..|.+ +|+-|--+|..+|+.|+.
T Consensus 6 ~~al~~L~-dp~~PvRa~gL~~L~~Li~~~~-~~~~~~~~il~l~l~~L~d-~DsyVYL~aI~~L~~La~ 72 (92)
T PF10363_consen 6 QEALSDLN-DPLPPVRAHGLVLLRKLIESKS-EPVIDIPKILDLFLSQLKD-EDSYVYLNAIKGLAALAD 72 (92)
T ss_pred HHHHHHcc-CCCcchHHHHHHHHHHHHHcCC-cchhhHHHHHHHHHHHcCC-CCchHHHHHHHHHHHHHH
Confidence 33455565 7788899999999999987755 2333346677888888876 788999999999999983
No 430
>PF14666 RICTOR_M: Rapamycin-insensitive companion of mTOR, middle domain
Probab=68.07 E-value=1.4e+02 Score=30.80 Aligned_cols=128 Identities=15% Similarity=0.064 Sum_probs=83.1
Q ss_pred HHHHHHHHHHHHHhhcCchhHHHHHhcCccHHHHHhhcCC------C------CHH-HHHHH----HHHHHHHhcChhHH
Q 006114 463 TTILRVASGAIANLAMNEMNQGLIMSRGGGQLLAKTASKT------D------DPQ-TLRMV----AGALANLCGNEKLH 525 (660)
Q Consensus 463 ~~v~~~Aa~AL~nLA~~~~n~~~Ive~g~I~~Ll~LL~~s------~------d~~-v~~~A----a~aLanLa~~~~~r 525 (660)
+.....+|..+..|...+++...+...+.++.+...|... . +|. +.... ...|+.++.++.+.
T Consensus 78 ~~y~~vGc~L~~~Ll~~~eG~~~l~~~~ll~qia~~L~~~d~~~g~~~~~~lfs~~~l~~tl~~~Yf~~IG~lS~~~~Gl 157 (226)
T PF14666_consen 78 QKYVRVGCQLLETLLSSPEGIKYLSESKLLPQIAECLAQVDPMSGITAHDPLFSPQRLSTTLSRGYFLFIGVLSSTPNGL 157 (226)
T ss_pred hHHHHHHHHHHHHHHcCcHHHHHHHHccHHHHHHHHHHHHhhhcCCcccccccCHHHHHhhHHHHHHHHHHHHhCChhHH
Confidence 4444556667777777777777777777777777766431 0 111 11112 24677888999999
Q ss_pred HHHHhccHHHHHHHHhcCCC-HHHHHHHHHHHHHhhccchhhhhhcchhhhHHHhhcChHH-HHHHhhcCCCHHHHHHHH
Q 006114 526 TMLEEDGAIKALLAMVRSGN-IDVIAQVARGLANFAKCESRAIVQGQRKGRSHLMEDSALE-WLIANSKTNSASTRRHVE 603 (660)
Q Consensus 526 ~~iv~~G~V~~Lv~lL~s~~-~~v~~~Al~aLanLA~~~~~~~aq~~~e~r~~Li~~G~v~-~Lv~lL~s~d~~vr~~Aa 603 (660)
..+-+.|.+..+..++..++ +++... .|.++-... .|... .|-..|.+++..+|..|+
T Consensus 158 ~lLe~~~if~~l~~i~~~~~~~~l~kl---il~~LDY~~-----------------~~~~R~iLsKaLt~~s~~iRl~aT 217 (226)
T PF14666_consen 158 KLLERWNIFTMLYHIFSLSSRDDLLKL---ILSSLDYSV-----------------DGHPRIILSKALTSGSESIRLYAT 217 (226)
T ss_pred HHHHHCCHHHHHHHHHccCchHHHHHH---HHhhCCCCC-----------------ccHHHHHHHHHHhcCCHHHHHHHH
Confidence 99999999999999998654 333333 444442211 22222 344567888899999999
Q ss_pred HHHHHhh
Q 006114 604 LALCHLA 610 (660)
Q Consensus 604 ~AL~nLa 610 (660)
..|..+.
T Consensus 218 ~~L~~ll 224 (226)
T PF14666_consen 218 KHLRVLL 224 (226)
T ss_pred HHHHHHh
Confidence 9988764
No 431
>KOG1566 consensus Conserved protein Mo25 [Function unknown]
Probab=67.95 E-value=1.9e+02 Score=31.47 Aligned_cols=185 Identities=13% Similarity=0.087 Sum_probs=127.4
Q ss_pred HHHHHcCCHHHHHHHHccCCCHHHHHHHHHHHHHhhcC-----chhHHHHHh-cCccHHHHHhhcCCC-CHHHHHHHHHH
Q 006114 442 EKIVEEGGLDALLLLLRTSQNTTILRVASGAIANLAMN-----EMNQGLIMS-RGGGQLLAKTASKTD-DPQTLRMVAGA 514 (660)
Q Consensus 442 ~~Ive~GgI~~Lv~LL~~s~d~~v~~~Aa~AL~nLA~~-----~~n~~~Ive-~g~I~~Ll~LL~~s~-d~~v~~~Aa~a 514 (660)
..+.++|.++.|+..+. .-+-+.+..++.+..|+-.. ......+.. ...+..|+.. .. .+++...+...
T Consensus 73 qef~~~~~l~~lI~~l~-~l~fE~rkD~~~ifnnllr~qvgtr~~tv~Yl~t~~e~~~~lv~~---~~~~~~iaL~cg~m 148 (342)
T KOG1566|consen 73 QEFYNADVLSLLIQHLP-KLEFESRKDVLQIFNNLLRRQVGTRSPTVEYLETNPEILDNLVKG---YENTPEIALTCGNM 148 (342)
T ss_pred HHHHhCCchHHHHHhhh-cccchhhhHHHHHHHHHHHhhcCCcchHHHHHHhCHHHHHHHHhh---hccchHHHHHHHHH
Confidence 45667888999999886 55666777777777777543 222333332 3344444444 34 47777777777
Q ss_pred HHHHhcChhHHHHHHhccHHHHHHHHhcCCCHHHHHHHHHHHHHhhccchhhhhhcchhhhHHHhhc---Ch-HHHHHHh
Q 006114 515 LANLCGNEKLHTMLEEDGAIKALLAMVRSGNIDVIAQVARGLANFAKCESRAIVQGQRKGRSHLMED---SA-LEWLIAN 590 (660)
Q Consensus 515 LanLa~~~~~r~~iv~~G~V~~Lv~lL~s~~~~v~~~Al~aLanLA~~~~~~~aq~~~e~r~~Li~~---G~-v~~Lv~l 590 (660)
|......+.+...+.....+.....++..++-++..-|..+.-.+...+- .....+... .. ....-.+
T Consensus 149 lrEcirhe~LakiiL~s~~~~~FF~~vq~p~FdiasdA~~tfK~llt~Hk--------~~vaEfl~~n~d~ff~e~~~~L 220 (342)
T KOG1566|consen 149 LRECIRHEFLAKIILESTNFEKFFLYVQLPNFDIASDAFSTFKELLTRHK--------SVVAEFLIRNYDNFFAEVYEKL 220 (342)
T ss_pred HHHHHhhHHHHHHHHcchhHHHHHHHHhccchHHHHHHHHHHHHHHHHhH--------HHHHHHHHhChhhhHHHHHHHH
Confidence 88888889999999999999999999998888888888888776654332 112223222 22 2335667
Q ss_pred hcCCCHHHHHHHHHHHHHhhcCCccHHHHH----hcCcHHHHHHHHhcCChH
Q 006114 591 SKTNSASTRRHVELALCHLAQNEDNARDFI----SRGGAKELVQISIESSRE 638 (660)
Q Consensus 591 L~s~d~~vr~~Aa~AL~nLa~~~e~~~~Iv----e~G~l~~Lv~lL~s~s~~ 638 (660)
+.+.+--+++.+..+|+.+-.+..|...|. +...+..++.+++.++..
T Consensus 221 l~s~Nyvtkrqs~kllg~llldr~N~~~M~kYiss~enLKlmM~llrdkskn 272 (342)
T KOG1566|consen 221 LRSENYVTKRQSLKLLGELLLDRSNSAVMTKYISSPENLKLMMNLLRDKSKN 272 (342)
T ss_pred hcccceehHHHHHHhHHHHHhCCCcHHHHHHHhcCHHHHHHHHHHhhCcccc
Confidence 888899999999999999987665554444 456788889999876543
No 432
>PF04111 APG6: Autophagy protein Apg6; InterPro: IPR007243 Macroautophagy is a bulk degradation process induced by starvation in eukaryotic cells. In yeast, 15 Apg proteins coordinate the formation of autophagosomes. No molecule involved in autophagy has yet been identified in higher eukaryotes []. The pre-autophagosomal structure contains at least five Apg proteins: Apg1p, Apg2p, Apg5p, Aut7p/Apg8p and Apg16p. It is found in the vacuole []. The C-terminal glycine of Apg12p is conjugated to a lysine residue of Apg5p via an isopeptide bond. During autophagy, cytoplasmic components are enclosed in autophagosomes and delivered to lysosomes/vacuoles. Auotphagy protein 16 (Apg16) has been shown to be bind to Apg5 and is required for the function of the Apg12p-Apg5p conjugate []. Autophagy protein 5 (Apg5) is directly required for the import of aminopeptidase I via the cytoplasm-to-vacuole targeting pathway []. Apg6/Vps30p has two distinct functions in the autophagic process, either associated with the membrane or in a retrieval step of the carboxypeptidase Y sorting pathway [].; GO: 0006914 autophagy; PDB: 3Q8T_A 3VP7_A 4DDP_A.
Probab=67.43 E-value=52 Score=35.57 Aligned_cols=18 Identities=6% Similarity=0.123 Sum_probs=7.8
Q ss_pred hchHHHHHHHHHHHhhhh
Q 006114 197 EGAEEQVDTMKKLISDNQ 214 (660)
Q Consensus 197 ~~~~~~~~~l~~~l~~~~ 214 (660)
.++..+......+|..++
T Consensus 116 ~sl~~q~~~~~~~L~~L~ 133 (314)
T PF04111_consen 116 DSLKNQYEYASNQLDRLR 133 (314)
T ss_dssp HHHHHHHHHHHHHHHCHH
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 333444444444444444
No 433
>TIGR03017 EpsF chain length determinant protein EpsF. Sequences in this family of proteins are members of the chain length determinant family (pfam02706) which includes the wzc protein from E.coli. This family of proteins are homologous to the EpsF protein of the methanolan biosynthesis operon of Methylobacillus species strain 12S. The distribution of this protein appears to be restricted to a subset of exopolysaccharide operons containing a syntenic grouping of genes including a variant of the EpsH exosortase protein. Exosortase has been proposed to be involved in the targetting and processing of proteins containing the PEP-CTERM domain to the exopolysaccharide layer.
Probab=67.33 E-value=2.1e+02 Score=31.91 Aligned_cols=41 Identities=15% Similarity=0.050 Sum_probs=20.7
Q ss_pred hHHHHHHHHHHHHHHHHHHhhhhchHHHHHHHHHHHhhhhh
Q 006114 175 TQMYEKKITELIKQLEIEHARSEGAEEQVDTMKKLISDNQK 215 (660)
Q Consensus 175 ~~~~~~~~~~l~~~l~~e~~~~~~~~~~~~~l~~~l~~~~~ 215 (660)
++.+..++.++..++..-..++..-+-.+..++.++.++++
T Consensus 256 i~~l~~~l~~le~~l~~l~~~y~~~hP~v~~l~~~i~~l~~ 296 (444)
T TIGR03017 256 IQNLKTDIARAESKLAELSQRLGPNHPQYKRAQAEINSLKS 296 (444)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhCCCCcHHHHHHHHHHHHHH
Confidence 34444455555555554444455555555555555555553
No 434
>KOG0995 consensus Centromere-associated protein HEC1 [Cell cycle control, cell division, chromosome partitioning]
Probab=67.10 E-value=2.5e+02 Score=32.70 Aligned_cols=29 Identities=24% Similarity=0.242 Sum_probs=17.1
Q ss_pred hhhhhhHHHHhhhhHHHHHHHHHhhhhhh
Q 006114 108 LVTRSEFLEKENAHLELEVEKILGELNHQ 136 (660)
Q Consensus 108 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 136 (660)
+....+--+-|+..|..+.++|.+.+..|
T Consensus 299 l~~Eie~kEeE~e~lq~~~d~Lk~~Ie~Q 327 (581)
T KOG0995|consen 299 LKSEIEEKEEEIEKLQKENDELKKQIELQ 327 (581)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 33333344566666666677777766555
No 435
>PF06705 SF-assemblin: SF-assemblin/beta giardin
Probab=67.05 E-value=1.6e+02 Score=30.43 Aligned_cols=112 Identities=22% Similarity=0.256 Sum_probs=68.8
Q ss_pred HHHHHhhHHHHHHHHHHHHHHHHHHhhhhchHHHHHHHHHHHhhhhhhHHHHhhhhhHHHHHHhhHHHHHHHHHHHHhhh
Q 006114 169 KVLADTTQMYEKKITELIKQLEIEHARSEGAEEQVDTMKKLISDNQKSIEQYEMENSTYQKALADTTQLYEKKIAELNKK 248 (660)
Q Consensus 169 ~~~~~~~~~~~~~~~~l~~~l~~e~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~ 248 (660)
.+...-.+.+.++|.+|...++.|+..+...+..+- ..|.+.. ...+..+..-....|.++.+|..-
T Consensus 117 ~~ie~~~~~l~~~l~~l~~~~~~Er~~R~erE~~i~---krl~e~~----------~~l~~~i~~Ek~~Re~~~~~l~~~ 183 (247)
T PF06705_consen 117 QDIEELNQELVRELNELQEAFENERNEREEREENIL---KRLEEEE----------NRLQEKIEKEKNTRESKLSELRSE 183 (247)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHH----------HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344556677888888888888888877665555432 2333333 122233444455566777777777
Q ss_pred hhhhhhhhhhhHHhHHHHHHHhhhhhccccchhHHHHHHHHHHHHHHHHHhHHHHHH
Q 006114 249 LEDEHACFEGAVEQLDMVKKLLSDYQNSNQGQKEVHELCVKLKETRQLHESAVYEVQ 305 (660)
Q Consensus 249 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~Lk~~Le~e~~~~e~~e~E~~ 305 (660)
+++-.......++++. ..--+|+..++..|..+++.|+...++|-
T Consensus 184 le~~~~~~~~~~e~f~------------~~v~~Ei~~lk~~l~~e~~~R~~~Dd~Iv 228 (247)
T PF06705_consen 184 LEEVKRRREKGDEQFQ------------NFVLEEIAALKNALALESQEREQSDDDIV 228 (247)
T ss_pred HHHHHHHHhhhhHHHH------------HHHHHHHHHHHHHHHHHHHHHHhhhhHHH
Confidence 6655544444444332 12356788888888888888888875554
No 436
>cd03561 VHS VHS domain family; The VHS domain is present in Vps27 (Vacuolar Protein Sorting), Hrs (Hepatocyte growth factor-regulated tyrosine kinase substrate) and STAM (Signal Transducing Adaptor Molecule). It has a superhelical structure similar to that of the ARM (Armadillo) repeats and is present at the N-termini of proteins involved in intracellular membrane trafficking. There are four general groups of VHS domain containing proteins based on their association with other domains. The first group consists of proteins of the STAM/EAST/Hbp family which has the domain composition VHS-SH3-ITAM. The second consists of proteins with a FYVE domain C-terminal to VHS. The third consists of GGA proteins with a domain composition VHS-GAT (GGA and TOM)-GAE (gamma-adaptin ear) domain. The fourth consists of proteins with a VHS domain alone or with domains other than those mentioned above. In GGA proteins, VHS domains are involved in cargo recognition in trans-Golgi, thereby having a general me
Probab=66.61 E-value=24 Score=32.95 Aligned_cols=70 Identities=14% Similarity=0.034 Sum_probs=58.3
Q ss_pred CHHHHHHHHccCCCHHHHHHHHHHHHHhhcC--chhHHHHHhcCccHHHHHhhcC--CCCHHHHHHHHHHHHHHh
Q 006114 449 GLDALLLLLRTSQNTTILRVASGAIANLAMN--EMNQGLIMSRGGGQLLAKTASK--TDDPQTLRMVAGALANLC 519 (660)
Q Consensus 449 gI~~Lv~LL~~s~d~~v~~~Aa~AL~nLA~~--~~n~~~Ive~g~I~~Ll~LL~~--s~d~~v~~~Aa~aLanLa 519 (660)
++..|..-|. ++++.++..|..+|-.|..+ +.....|.....+..|+.++.. ..++.|+..+...|.+++
T Consensus 38 a~raL~krl~-~~n~~vql~AL~lLd~~vkNcg~~f~~~i~s~~fl~~l~~l~~~~~~~~~~Vk~kil~ll~~W~ 111 (133)
T cd03561 38 AARAIRKKIK-YGNPHVQLLALTLLELLVKNCGKPFHLQVADKEFLLELVKIAKNSPKYDPKVREKALELILAWS 111 (133)
T ss_pred HHHHHHHHHc-CCCHHHHHHHHHHHHHHHHhCChHHHHHHhhHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHHHH
Confidence 4777778887 67999999999999999877 5577788887888889999875 467899999999999887
No 437
>smart00288 VHS Domain present in VPS-27, Hrs and STAM. Unpublished observations. Domain of unknown function.
Probab=66.30 E-value=20 Score=33.62 Aligned_cols=70 Identities=11% Similarity=-0.013 Sum_probs=57.5
Q ss_pred CHHHHHHHHccCCCHHHHHHHHHHHHHhhcC--chhHHHHHhcCccHHHHHhhcCCCCHH-HHHHHHHHHHHHh
Q 006114 449 GLDALLLLLRTSQNTTILRVASGAIANLAMN--EMNQGLIMSRGGGQLLAKTASKTDDPQ-TLRMVAGALANLC 519 (660)
Q Consensus 449 gI~~Lv~LL~~s~d~~v~~~Aa~AL~nLA~~--~~n~~~Ive~g~I~~Ll~LL~~s~d~~-v~~~Aa~aLanLa 519 (660)
++..|..-|. +++|.++..|..+|-.+..+ +.....|...+.+..|..++....+.. |+..++..+..++
T Consensus 38 a~r~l~krl~-~~n~~v~l~AL~lLe~~vkNcg~~f~~ev~s~~fl~~L~~l~~~~~~~~~Vk~kil~li~~W~ 110 (133)
T smart00288 38 AVRLLKKRLN-NKNPHVALLALTLLDACVKNCGSKFHLEVASKEFLNELVKLIKPKYPLPLVKKRILELIQEWA 110 (133)
T ss_pred HHHHHHHHHc-CCCHHHHHHHHHHHHHHHHHCCHHHHHHHHhHHHHHHHHHHHcCCCCcHHHHHHHHHHHHHHH
Confidence 4677778887 78999999999999999876 667888888889999999997755544 8888888888876
No 438
>PF08172 CASP_C: CASP C terminal; InterPro: IPR012955 This domain is the C-terminal region of the CASP family of proteins. These are Golgi membrane proteins which are thought to have a role in vesicle transport [].; GO: 0006891 intra-Golgi vesicle-mediated transport, 0030173 integral to Golgi membrane
Probab=66.21 E-value=45 Score=34.87 Aligned_cols=33 Identities=33% Similarity=0.430 Sum_probs=27.9
Q ss_pred hHHHHHHHHHHHHHHHHHhhhhchHHHHHHHHHHHhh
Q 006114 64 NLVTQVELLTAKIEMQQKLRENDKYEFEKQLRESQIS 100 (660)
Q Consensus 64 ~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~ 100 (660)
.|..+++.++++++.+++| -..||+-|...+..
T Consensus 3 ~lq~~l~~l~~~~~~~~~L----~~kLE~DL~~~~~~ 35 (248)
T PF08172_consen 3 ELQKELSELEAKLEEQKEL----NAKLENDLAKVQAS 35 (248)
T ss_pred HHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHhcc
Confidence 5778999999999999999 67788888888754
No 439
>PF09744 Jnk-SapK_ap_N: JNK_SAPK-associated protein-1; InterPro: IPR019143 This entry represents the N-terminal 200 residues of a set of proteins conserved from yeasts to humans. Most of the proteins in this entry have a RhoGEF domain (IPR000219 from INTERPRO) at their C-terminal end.
Probab=66.12 E-value=1.1e+02 Score=29.80 Aligned_cols=43 Identities=28% Similarity=0.455 Sum_probs=36.8
Q ss_pred hHHHHHHHHHHHhhHHHHHHhhhhhhhHHHHhhhhHHHHHHHH
Q 006114 87 KYEFEKQLRESQISYDESMRNLVTRSEFLEKENAHLELEVEKI 129 (660)
Q Consensus 87 ~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 129 (660)
+..+|+++-+....|....+.|..+.+.|+.+|++|+.-++.+
T Consensus 73 r~~~e~~l~~~Ed~~~~e~k~L~~~v~~Le~e~r~L~~~~~~~ 115 (158)
T PF09744_consen 73 RKQAEEELLELEDQWRQERKDLQSQVEQLEEENRQLELKLKNL 115 (158)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhh
Confidence 7778889999999999999999999999999999988666543
No 440
>KOG1020 consensus Sister chromatid cohesion protein SCC2/Nipped-B [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning; Replication, recombination and repair]
Probab=66.11 E-value=1.5e+02 Score=38.42 Aligned_cols=105 Identities=8% Similarity=0.046 Sum_probs=69.0
Q ss_pred CHHHHHHHHccCCCHHHHHHHHHHHHHhhcCchh--HHHHHhcCccHHHHHhhcCCCCHHHHHHHHHHHHHHh-cChhHH
Q 006114 449 GLDALLLLLRTSQNTTILRVASGAIANLAMNEMN--QGLIMSRGGGQLLAKTASKTDDPQTLRMVAGALANLC-GNEKLH 525 (660)
Q Consensus 449 gI~~Lv~LL~~s~d~~v~~~Aa~AL~nLA~~~~n--~~~Ive~g~I~~Ll~LL~~s~d~~v~~~Aa~aLanLa-~~~~~r 525 (660)
.+..++..|. .+-+.+|..|..||.++...++. ...-|..|+. .-+.+ ....|+.+|.-.++... .+++.-
T Consensus 817 yLk~Il~~l~-e~~ialRtkAlKclS~ive~Dp~vL~~~dvq~~Vh----~R~~D-ssasVREAaldLvGrfvl~~~e~~ 890 (1692)
T KOG1020|consen 817 YLKLILSVLG-ENAIALRTKALKCLSMIVEADPSVLSRPDVQEAVH----GRLND-SSASVREAALDLVGRFVLSIPELI 890 (1692)
T ss_pred HHHHHHHHhc-CchHHHHHHHHHHHHHHHhcChHhhcCHHHHHHHH----Hhhcc-chhHHHHHHHHHHhhhhhccHHHH
Confidence 3777788887 77889999999999999876431 1222223222 22222 45678888888887554 444332
Q ss_pred HHHHhccHHHHHHHHhcCCCHHHHHHHHHHHHHhhccch
Q 006114 526 TMLEEDGAIKALLAMVRSGNIDVIAQVARGLANFAKCES 564 (660)
Q Consensus 526 ~~iv~~G~V~~Lv~lL~s~~~~v~~~Al~aLanLA~~~~ 564 (660)
.. ....+..-+..+...|+..|+..++-+|...|
T Consensus 891 ~q-----yY~~i~erIlDtgvsVRKRvIKIlrdic~e~p 924 (1692)
T KOG1020|consen 891 FQ-----YYDQIIERILDTGVSVRKRVIKILRDICEETP 924 (1692)
T ss_pred HH-----HHHHHHhhcCCCchhHHHHHHHHHHHHHHhCC
Confidence 22 23345566667788899999999999986554
No 441
>KOG0413 consensus Uncharacterized conserved protein related to condensin complex subunit 1 [Function unknown]
Probab=66.07 E-value=32 Score=42.04 Aligned_cols=116 Identities=19% Similarity=0.286 Sum_probs=78.2
Q ss_pred HHHHHHHHHHHHHh-cChhHHHHHHhccHHHHHHHHhc-CCCHHHHHHHHHHHHHhhccchhhhhhcchhhhHHHhhcCh
Q 006114 506 QTLRMVAGALANLC-GNEKLHTMLEEDGAIKALLAMVR-SGNIDVIAQVARGLANFAKCESRAIVQGQRKGRSHLMEDSA 583 (660)
Q Consensus 506 ~v~~~Aa~aLanLa-~~~~~r~~iv~~G~V~~Lv~lL~-s~~~~v~~~Al~aLanLA~~~~~~~aq~~~e~r~~Li~~G~ 583 (660)
-++..+.-+|++|| .++.+.. ..+|.|+.-|. +....++.+.+-+++.||.. -.+.-+..
T Consensus 946 ~vra~~vvTlakmcLah~~LaK-----r~~P~lvkeLe~~~~~aiRnNiV~am~D~C~~-------------YTam~d~Y 1007 (1529)
T KOG0413|consen 946 KVRAVGVVTLAKMCLAHDRLAK-----RLMPMLVKELEYNTAHAIRNNIVLAMGDICSS-------------YTAMTDRY 1007 (1529)
T ss_pred HHHHHHHHHHHHHHhhhhHHHH-----HHHHHHHHHHHhhhHHHHhcceeeeehhhHHH-------------HHHHHHHh
Confidence 34555666888888 4444433 35788887776 66677888888899888853 22344678
Q ss_pred HHHHHHhhcCCCHHHHHHHHHHHHHhhcCCccHHHHHhcCcHHHHHHHHhc--CChHHHHHHHH
Q 006114 584 LEWLIANSKTNSASTRRHVELALCHLAQNEDNARDFISRGGAKELVQISIE--SSREDIRNLAK 645 (660)
Q Consensus 584 v~~Lv~lL~s~d~~vr~~Aa~AL~nLa~~~e~~~~Ive~G~l~~Lv~lL~s--~s~~~ir~~A~ 645 (660)
+|.+...|.++++-||+++...|.+|-+.. +++-.|.- +++++.+ ...+++++-|.
T Consensus 1008 iP~I~~~L~Dp~~iVRrqt~ilL~rLLq~~-----~vKw~G~L-f~Rf~l~l~D~~edIr~~a~ 1065 (1529)
T KOG0413|consen 1008 IPMIAASLCDPSVIVRRQTIILLARLLQFG-----IVKWNGEL-FIRFMLALLDANEDIRNDAK 1065 (1529)
T ss_pred hHHHHHHhcCchHHHHHHHHHHHHHHHhhh-----hhhcchhh-HHHHHHHHcccCHHHHHHHH
Confidence 999999999999999999999999986643 23322211 1222211 35567777776
No 442
>PF06428 Sec2p: GDP/GTP exchange factor Sec2p; InterPro: IPR009449 In Saccharomyces cerevisiae, Sec2p is a GDP/GTP exchange factor for Sec4p, which is required for vesicular transport at the post-Golgi stage of yeast secretion []. It catalyzes the dissociation of GDP from SEC4 and also potently promoting binding of GTP. Activation of SEC4 by SEC2 is needed for the directed transport of vesicles to sites of exocytosis. Binds the Rab GTPase YPT32, but does not have exhange activity on YPT32 [, , ].; PDB: 2EQB_C 2E7S_K 2OCY_A.
Probab=66.04 E-value=18 Score=32.49 Aligned_cols=80 Identities=26% Similarity=0.363 Sum_probs=54.6
Q ss_pred HHHHHHhhhhchHHHHHHHHHHHhhhhhhHHHHhhhhhHHHHHHhh---HHHHHHHHHHHHhhhhhhhhhhhhhhHHhHH
Q 006114 188 QLEIEHARSEGAEEQVDTMKKLISDNQKSIEQYEMENSTYQKALAD---TTQLYEKKIAELNKKLEDEHACFEGAVEQLD 264 (660)
Q Consensus 188 ~l~~e~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~l~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 264 (660)
.|..+...+..++.....++.-|.++-.+.= ..+.++.++ -+..++.+...|.+++.+-.++++....||.
T Consensus 2 ~l~~e~~~r~~ae~~~~~ie~ElEeLTasLF------eEAN~MVa~ar~e~~~~e~k~~~le~~l~e~~~~l~~lq~qL~ 75 (100)
T PF06428_consen 2 ELEEERERREEAEQEKEQIESELEELTASLF------EEANKMVADARRERAALEEKNEQLEKQLKEKEALLESLQAQLK 75 (100)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH------HHHHHHHHHHHHHHHHHHHHHHHHHHCTTHHCHCCCHCTSSSS
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3555666666666666666666655553321 111222222 2467889999999999999999999999999
Q ss_pred HHHHHhhhh
Q 006114 265 MVKKLLSDY 273 (660)
Q Consensus 265 ~~~~~~~~~ 273 (660)
.+|.++...
T Consensus 76 ~LK~v~~~~ 84 (100)
T PF06428_consen 76 ELKTVMESM 84 (100)
T ss_dssp HHHHCTTT-
T ss_pred HHHHHHHHc
Confidence 999988763
No 443
>PF15066 CAGE1: Cancer-associated gene protein 1 family
Probab=65.99 E-value=2.4e+02 Score=32.06 Aligned_cols=166 Identities=21% Similarity=0.221 Sum_probs=93.6
Q ss_pred HHHHHHHHHHHHhhH------HHHHhhHHHHHHHHHHHHHHHHHhhhhchHHHHHHHHHHHhhHHHHHHhhhhhhhHHHH
Q 006114 44 KCELEKLLRECQISY------DEAKDNLVTQVELLTAKIEMQQKLRENDKYEFEKQLRESQISYDESMRNLVTRSEFLEK 117 (660)
Q Consensus 44 ~~~~~~~~~~~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~ 117 (660)
-.-||++.++.|.+. =+.-.+|..-|+.|... +=++ --+|-+.+|-|..+|..+...=+.|.+. ..
T Consensus 340 N~yLe~kvkeLQ~k~~kQqvfvDiinkLk~niEeLIed---KY~v-iLEKnd~~k~lqnLqe~la~tqk~LqEs----r~ 411 (527)
T PF15066_consen 340 NLYLEKKVKELQMKITKQQVFVDIINKLKENIEELIED---KYRV-ILEKNDIEKTLQNLQEALANTQKHLQES----RN 411 (527)
T ss_pred cHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHh---HhHh-hhhhhhHHHHHHHHHHHHHHHHHHHHHH----Hh
Confidence 345666666655543 34445555555554322 2111 2256677777777777777776666655 78
Q ss_pred hhhhHHHHHHHHHhhh-hhhhhhhhhHHHHHHHHHHHhhhhhhhhhhhhhhHHHHHHhhHHHHHHHHHHHH---HHHHHH
Q 006114 118 ENAHLELEVEKILGEL-NHQKDQNNLKREKIVQLEISLKNSKQQQLDNSSYQKVLADTTQMYEKKITELIK---QLEIEH 193 (660)
Q Consensus 118 ~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~---~l~~e~ 193 (660)
|+..|.+|+|++...- .-|-...+.| |+...-+.+.--+.++....|.+|.+|.. .||+-+
T Consensus 412 eKetLqlelkK~k~nyv~LQEry~~ei---------------QqKnksvsqclEmdk~LskKeeeverLQ~lkgelEkat 476 (527)
T PF15066_consen 412 EKETLQLELKKIKANYVHLQERYMTEI---------------QQKNKSVSQCLEMDKTLSKKEEEVERLQQLKGELEKAT 476 (527)
T ss_pred hHHHHHHHHHHHhhhHHHHHHHHHHHH---------------HHhhhHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHH
Confidence 8888999999887654 2222222222 22222234444566777777778777654 333332
Q ss_pred -hhhhchHHHHHHHHHHHhhhhhhHHHHhhhhhHHHHHHh
Q 006114 194 -ARSEGAEEQVDTMKKLISDNQKSIEQYEMENSTYQKALA 232 (660)
Q Consensus 194 -~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~l~ 232 (660)
+--+.+-.|-..-++.+--+|..+++|+++|-.=+..|-
T Consensus 477 ~SALdlLkrEKe~~EqefLslqeEfQk~ekenl~ERqkLK 516 (527)
T PF15066_consen 477 TSALDLLKREKETREQEFLSLQEEFQKHEKENLEERQKLK 516 (527)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHH
Confidence 122233344444555666667777788888866655554
No 444
>PRK10929 putative mechanosensitive channel protein; Provisional
Probab=65.97 E-value=3.7e+02 Score=34.23 Aligned_cols=123 Identities=16% Similarity=0.133 Sum_probs=71.1
Q ss_pred HHHHHHHHHHHhhhhhhhhhhhhhhHHHHHHhhHHHHHHHHHHHHHHHHHHhhhhchHHHHHHHHHH---HhhhhhhHHH
Q 006114 143 KREKIVQLEISLKNSKQQQLDNSSYQKVLADTTQMYEKKITELIKQLEIEHARSEGAEEQVDTMKKL---ISDNQKSIEQ 219 (660)
Q Consensus 143 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~e~~~~~~~~~~~~~l~~~---l~~~~~~~~~ 219 (660)
+..++..+|.++-.+.+.+--...+...+....+.++..+..|...+...+. ...|..+.+.++. ..+....+++
T Consensus 185 l~~~~~~l~~~l~s~~~~~~L~~~q~dl~~~~~~~l~~~~~~Lq~~in~kR~--~~se~~~~~~~~~~~~~~~~~~~i~~ 262 (1109)
T PRK10929 185 LKALVDELELAQLSANNRQELARLRSELAKKRSQQLDAYLQALRNQLNSQRQ--REAERALESTELLAEQSGDLPKSIVA 262 (1109)
T ss_pred HHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHhHHhhccCChHHHH
Confidence 3345555555555555555555556667777788888888887777765442 2333334333332 2233444556
Q ss_pred HhhhhhHHHHHHhhHHHHH---HHHHHHHhhhhhhhhhhhhhhHHhHHHHH
Q 006114 220 YEMENSTYQKALADTTQLY---EKKIAELNKKLEDEHACFEGAVEQLDMVK 267 (660)
Q Consensus 220 ~~~~~~~~~~~l~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 267 (660)
.-..|-.|.+.|...|+-- -.+-....+++..-.-.+.+..+|+..++
T Consensus 263 ~~~~N~~Ls~~L~~~t~~~n~l~~~~~~~~~~l~~~~q~~~~i~eQi~~l~ 313 (1109)
T PRK10929 263 QFKINRELSQALNQQAQRMDLIASQQRQAASQTLQVRQALNTLREQSQWLG 313 (1109)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 6667888888888777642 23334444555555556666666665443
No 445
>PF04012 PspA_IM30: PspA/IM30 family; InterPro: IPR007157 This family includes PspA a protein that suppresses sigma54-dependent transcription. The PspA protein, a negative regulator of the Escherichia coli phage shock psp operon, is produced when virulence factors are exported through secretins in many Gram-negative pathogenic bacteria and its homologue in plants, VIPP1, plays a critical role in thylakoid biogenesis, essential for photosynthesis. Activation of transcription by the enhancer-dependent bacterial sigma54-containing RNA polymerase occurs through ATP hydrolysis-driven protein conformational changes enabled by activator proteins that belong to the large AAA(+) mechanochemical protein family. It has been shown that PspA directly and specifically acts upon and binds to the AAA(+) domain of the PspF transcription activator [].
Probab=65.38 E-value=1.6e+02 Score=29.74 Aligned_cols=44 Identities=18% Similarity=0.256 Sum_probs=25.5
Q ss_pred HHHhhHHHHHHHHHHHHHHHHHHhhhhchHHHHHHHHHHHhhhh
Q 006114 171 LADTTQMYEKKITELIKQLEIEHARSEGAEEQVDTMKKLISDNQ 214 (660)
Q Consensus 171 ~~~~~~~~~~~~~~l~~~l~~e~~~~~~~~~~~~~l~~~l~~~~ 214 (660)
.......++..+..+..+++.....-..+...+..|+..+.+++
T Consensus 89 al~~k~~~e~~~~~l~~~~~~~~~~~~~l~~~l~~l~~kl~e~k 132 (221)
T PF04012_consen 89 ALQRKADLEEQAERLEQQLDQAEAQVEKLKEQLEELEAKLEELK 132 (221)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33445666666666666666666555555555555555555554
No 446
>PF14988 DUF4515: Domain of unknown function (DUF4515)
Probab=64.35 E-value=1.7e+02 Score=29.72 Aligned_cols=120 Identities=22% Similarity=0.241 Sum_probs=54.6
Q ss_pred HHHHHHhhhhhhhHHHHhhhhHHHHHHHHHhhhhhhhhhhhhHHHHHHHHHHHhhhhhhhhhhhhhhHH-HHHHhhHHHH
Q 006114 101 YDESMRNLVTRSEFLEKENAHLELEVEKILGELNHQKDQNNLKREKIVQLEISLKNSKQQQLDNSSYQK-VLADTTQMYE 179 (660)
Q Consensus 101 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~ 179 (660)
|..-+..|.+..---+++...+..+++.|..-- -....+..++..|+.++..+.-...+.--+-+ ..-.+...+|
T Consensus 45 y~~q~~~Lq~qLlq~~k~~~~l~~eLq~l~~~~----~~k~~qe~eI~~Le~e~~~~~~e~~~~l~~~~~qfl~EK~~LE 120 (206)
T PF14988_consen 45 YAKQTSELQDQLLQKEKEQAKLQQELQALKEFR----RLKEQQEREIQTLEEELEKMRAEHAEKLQEAESQFLQEKARLE 120 (206)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333333333332222445555555544433221 12223445566666666655544443332222 2334455565
Q ss_pred HHHHHHHHHHHHHHhhhhchHHHHHH--------HHHHHhhhhhhHHHHhhhhhHHHHHHh
Q 006114 180 KKITELIKQLEIEHARSEGAEEQVDT--------MKKLISDNQKSIEQYEMENSTYQKALA 232 (660)
Q Consensus 180 ~~~~~l~~~l~~e~~~~~~~~~~~~~--------l~~~l~~~~~~~~~~~~~~~~~~~~l~ 232 (660)
++..+..-.. .-..++.+++. -+..+++.-.++. .||..+++.|.
T Consensus 121 ke~~e~~i~~-----l~e~a~~el~~k~~ale~~A~~~l~e~~~~i~---~EN~~L~k~L~ 173 (206)
T PF14988_consen 121 KEASELKILQ-----LGERAHKELKKKAQALELAAKKSLDEFTRSIK---RENQQLRKELL 173 (206)
T ss_pred HHHHHhhHHH-----hHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHH
Confidence 5554433321 11122333222 3555666666555 67777777666
No 447
>TIGR01010 BexC_CtrB_KpsE polysaccharide export inner-membrane protein, BexC/CtrB/KpsE family. This family contains gamma proteobacterial proteins involved in capsule polysaccharide export.
Probab=64.26 E-value=2.2e+02 Score=31.01 Aligned_cols=113 Identities=14% Similarity=0.214 Sum_probs=64.1
Q ss_pred hhhchHHHHHHHHHHHhhhhhhHHHHhhhhhHHHHHHhhHHHHHHHHHHHHhhhhhhhhhhhhhhHHhHHHHHHHhhh-h
Q 006114 195 RSEGAEEQVDTMKKLISDNQKSIEQYEMENSTYQKALADTTQLYEKKIAELNKKLEDEHACFEGAVEQLDMVKKLLSD-Y 273 (660)
Q Consensus 195 ~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~ 273 (660)
...-+++++..++..+.+.+.....++..|..+. ....+..+-..|++|..++. .++-+|..+.....+ +
T Consensus 171 a~~fl~~ql~~~~~~l~~ae~~l~~fr~~~~~~d--~~~~~~~~~~~i~~L~~~l~-------~~~~~l~~l~~~~~~~~ 241 (362)
T TIGR01010 171 TIAFAENEVKEAEQRLNATKAELLKYQIKNKVFD--PKAQSSAQLSLISTLEGELI-------RVQAQLAQLRSITPEQN 241 (362)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCcC--hHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHhhCCCCC
Confidence 3456677777777777777777777767665542 22233444555555555543 444555555555555 5
Q ss_pred hccccchhHHHHHHHHHHHHHHHHHhH-HHHHHHHHHHHHHHHH
Q 006114 274 QNSNQGQKEVHELCVKLKETRQLHESA-VYEVQTLKSEYKNLLE 316 (660)
Q Consensus 274 ~~~~~~~~e~~~Lk~~Le~e~~~~e~~-e~E~~~lks~l~~l~~ 316 (660)
-....-..++..|+..+..+....... ...+.....++..|+.
T Consensus 242 P~v~~l~~~i~~l~~~i~~e~~~i~~~~~~~l~~~~~~~~~L~r 285 (362)
T TIGR01010 242 PQVPSLQARIKSLRKQIDEQRNQLSGGLGDSLNEQTADYQRLVL 285 (362)
T ss_pred CchHHHHHHHHHHHHHHHHHHHHhhcCCCccHHHHHHHHHHHHH
Confidence 555556666777777777666554332 1123444445554444
No 448
>KOG1243 consensus Protein kinase [General function prediction only]
Probab=64.01 E-value=35 Score=40.33 Aligned_cols=171 Identities=12% Similarity=0.044 Sum_probs=104.5
Q ss_pred HHcCCHHHHHHHHccCCCHHHHHHHHHHHHHhhcCchhHHHHHhcCccHHHHHhhcCCCCHHHHHHHHHHHHHHhcChhH
Q 006114 445 VEEGGLDALLLLLRTSQNTTILRVASGAIANLAMNEMNQGLIMSRGGGQLLAKTASKTDDPQTLRMVAGALANLCGNEKL 524 (660)
Q Consensus 445 ve~GgI~~Lv~LL~~s~d~~v~~~Aa~AL~nLA~~~~n~~~Ive~g~I~~Ll~LL~~s~d~~v~~~Aa~aLanLa~~~~~ 524 (660)
...+.+|.|+.++. .+|..+|..-+.-+-+.. +.....+++.-++|.+...+.+ .++.++.....++..|+..=..
T Consensus 327 yq~~i~p~l~kLF~-~~Dr~iR~~LL~~i~~~i--~~Lt~~~~~d~I~phv~~G~~D-Tn~~Lre~Tlksm~~La~kL~~ 402 (690)
T KOG1243|consen 327 YQVRIIPVLLKLFK-SPDRQIRLLLLQYIEKYI--DHLTKQILNDQIFPHVALGFLD-TNATLREQTLKSMAVLAPKLSK 402 (690)
T ss_pred cccchhhhHHHHhc-CcchHHHHHHHHhHHHHh--hhcCHHhhcchhHHHHHhhccc-CCHHHHHHHHHHHHHHHhhhch
Confidence 34457999999997 888888765444333332 3345567788889999888865 6888999888888877631111
Q ss_pred HHHHHhccHHHHHHHHhcCCCHHHHHHHHHHHHHhhccchhhhhhcchhhhHHHhhcCh-HHHHHHhhcCCCHHHHHHHH
Q 006114 525 HTMLEEDGAIKALLAMVRSGNIDVIAQVARGLANFAKCESRAIVQGQRKGRSHLMEDSA-LEWLIANSKTNSASTRRHVE 603 (660)
Q Consensus 525 r~~iv~~G~V~~Lv~lL~s~~~~v~~~Al~aLanLA~~~~~~~aq~~~e~r~~Li~~G~-v~~Lv~lL~s~d~~vr~~Aa 603 (660)
+ ..+...+..+..+-...++.++.+..-||+-++...+. ....++ +....+.+.++-...|.++.
T Consensus 403 ~--~Ln~Ellr~~ar~q~d~~~~irtntticlgki~~~l~~------------~~R~~vL~~aftralkdpf~paR~a~v 468 (690)
T KOG1243|consen 403 R--NLNGELLRYLARLQPDEHGGIRTNTTICLGKIAPHLAA------------SVRKRVLASAFTRALKDPFVPARKAGV 468 (690)
T ss_pred h--hhcHHHHHHHHhhCccccCcccccceeeecccccccch------------hhhccccchhhhhhhcCCCCCchhhhh
Confidence 1 12222233333333356777888888888888755321 112222 23444556666667788888
Q ss_pred HHHHHhhcCCccHHHHHhcCcHHHHHHHHhcC
Q 006114 604 LALCHLAQNEDNARDFISRGGAKELVQISIES 635 (660)
Q Consensus 604 ~AL~nLa~~~e~~~~Ive~G~l~~Lv~lL~s~ 635 (660)
++|+..+....... +..-++|.|+-+.-+.
T Consensus 469 ~~l~at~~~~~~~~--va~kIlp~l~pl~vd~ 498 (690)
T KOG1243|consen 469 LALAATQEYFDQSE--VANKILPSLVPLTVDP 498 (690)
T ss_pred HHHhhcccccchhh--hhhhccccccccccCc
Confidence 88888776554322 2333566666655543
No 449
>TIGR01843 type_I_hlyD type I secretion membrane fusion protein, HlyD family. Type I secretion is an ABC transport process that exports proteins, without cleavage of any signal sequence, from the cytosol to extracellular medium across both inner and outer membranes. The secretion signal is found in the C-terminus of the transported protein. This model represents the adaptor protein between the ATP-binding cassette (ABC) protein of the inner membrane and the outer membrane protein, and is called the membrane fusion protein. This model selects a subfamily closely related to HlyD; it is defined narrowly and excludes, for example, colicin V secretion protein CvaA and multidrug efflux proteins.
Probab=63.79 E-value=2.3e+02 Score=31.03 Aligned_cols=9 Identities=44% Similarity=0.434 Sum_probs=3.3
Q ss_pred HHHHHHHHH
Q 006114 68 QVELLTAKI 76 (660)
Q Consensus 68 ~~~~~~~~~ 76 (660)
++..+.+.+
T Consensus 89 ~~~~l~a~~ 97 (423)
T TIGR01843 89 QVLRLEAEV 97 (423)
T ss_pred HHHHHHHHH
Confidence 333333333
No 450
>COG5218 YCG1 Chromosome condensation complex Condensin, subunit G [Chromatin structure and dynamics / Cell division and chromosome partitioning]
Probab=63.76 E-value=1e+02 Score=36.07 Aligned_cols=115 Identities=19% Similarity=0.168 Sum_probs=71.4
Q ss_pred cChhHHHHHHhccHHHHHHHHhcCCCHHHHHHHHHHHHHhhccchhhhhhcchhhhHHHhhcChHHHHHHhhcCCCHHHH
Q 006114 520 GNEKLHTMLEEDGAIKALLAMVRSGNIDVIAQVARGLANFAKCESRAIVQGQRKGRSHLMEDSALEWLIANSKTNSASTR 599 (660)
Q Consensus 520 ~~~~~r~~iv~~G~V~~Lv~lL~s~~~~v~~~Al~aLanLA~~~~~~~aq~~~e~r~~Li~~G~v~~Lv~lL~s~d~~vr 599 (660)
.+|++ ..++ .|.+.-++.-+.+++..|+..++..|+.+..+-- +. ...+-.|.+..|..-+-+..+.||
T Consensus 81 ~dpeg-~~~V-~~~~~h~lRg~eskdk~VR~r~lqila~~~d~v~--------eI-De~l~N~L~ekl~~R~~DRE~~VR 149 (885)
T COG5218 81 DDPEG-EELV-AGTFYHLLRGTESKDKKVRKRSLQILALLSDVVR--------EI-DEVLANGLLEKLSERLFDREKAVR 149 (885)
T ss_pred CChhh-hHHH-HHHHHHHHhcccCcchhHHHHHHHHHHHHHHhcc--------hH-HHHHHHHHHHHHHHHHhcchHHHH
Confidence 44554 2233 2566666667778999999999999998885521 10 112335666777777777889999
Q ss_pred HHHHHHHHHhhcCCccHHHHHhcCcHHHHHHHHhcCChHHHHHHHHHHHh
Q 006114 600 RHVELALCHLAQNEDNARDFISRGGAKELVQISIESSREDIRNLAKKTMK 649 (660)
Q Consensus 600 ~~Aa~AL~nLa~~~e~~~~Ive~G~l~~Lv~lL~s~s~~~ir~~A~~~L~ 649 (660)
..|..+|+.+-..+.+-. ...+..|+.+++...+...|..|.-.+.
T Consensus 150 ~eAv~~L~~~Qe~~~nee----n~~~n~l~~~vqnDPS~EVRr~allni~ 195 (885)
T COG5218 150 REAVKVLCYYQEMELNEE----NRIVNLLKDIVQNDPSDEVRRLALLNIS 195 (885)
T ss_pred HHHHHHHHHHHhccCChH----HHHHHHHHHHHhcCcHHHHHHHHHHHee
Confidence 999999998864433311 1223355666665444445555554443
No 451
>PF06685 DUF1186: Protein of unknown function (DUF1186); InterPro: IPR010602 This family consists of several hypothetical bacterial proteins of around 250 residues in length and is found in several Chlamydia and Anabaena species. The function of this family is unknown.
Probab=63.73 E-value=1.9e+02 Score=30.21 Aligned_cols=110 Identities=20% Similarity=0.229 Sum_probs=64.1
Q ss_pred CHHHHHHhhCC-----------CCHHHHHHHHHHHHHhhCCchhHHHHHHcCCHHHHHHHHccCCCH-------HHHHHH
Q 006114 408 GLPKILQLLTS-----------EDPDVQIHAVKVVANLAAEDINQEKIVEEGGLDALLLLLRTSQNT-------TILRVA 469 (660)
Q Consensus 408 gI~~LV~LL~s-----------~d~~vr~~Aa~aL~nLa~~~en~~~Ive~GgI~~Lv~LL~~s~d~-------~v~~~A 469 (660)
.+|.|+.+|.. ++......|+.+|+ .+.+.-+.|+|+++++.++++ .+-...
T Consensus 32 i~P~Ll~~Le~a~~~~~e~~~~~~~~~~~~a~~LLa----------q~re~~A~~~li~l~~~~~~~~~~l~GD~~tE~l 101 (249)
T PF06685_consen 32 ITPELLKILEDAIERANELLDDEEYNLHFYALYLLA----------QFREERALPPLIRLFSQDDDFLEDLFGDFITEDL 101 (249)
T ss_pred hhHHHHHHHHHHHHhHHHhccCcchHHHHHHHHHHH----------HHhhhhhHHHHHHHHcCCcchHHHHHcchhHhHH
Confidence 46777766641 22344567777773 444555899999999744332 111222
Q ss_pred HHHHHHhhcCchhHHHHHhcCccHHHHHhhcCC-CCHHHHHHHHHHHHHHh-cChhHHHHHHhccHHHHHHHH
Q 006114 470 SGAIANLAMNEMNQGLIMSRGGGQLLAKTASKT-DDPQTLRMVAGALANLC-GNEKLHTMLEEDGAIKALLAM 540 (660)
Q Consensus 470 a~AL~nLA~~~~n~~~Ive~g~I~~Ll~LL~~s-~d~~v~~~Aa~aLanLa-~~~~~r~~iv~~G~V~~Lv~l 540 (660)
..+++.+ -.|-+..|..++.++ -+.-++..|+.+|..++ ..+..|..+++ .+..++..
T Consensus 102 ~~ilasv-----------~~G~~~~L~~li~~~~~~~yvR~aa~~aL~~l~~~~~~~Re~vi~--~f~~ll~~ 161 (249)
T PF06685_consen 102 PRILASV-----------GDGDIEPLKELIEDPDADEYVRMAAISALAFLVHEGPISREEVIQ--YFRELLNY 161 (249)
T ss_pred HHHHHHH-----------hCCCHHHHHHHHhCCcHHHHHHHHHHHHHHHHHHcCCCCHHHHHH--HHHHHHHH
Confidence 2233332 245567777777653 24456777778999988 55666776665 24444433
No 452
>PF02994 Transposase_22: L1 transposable element; InterPro: IPR004244 Many human L1 elements are capable of retrotransposition. Some of these have been shown to exhibit reverse transcriptase (RT) activity [] although the function of many are, as yet, unknown. More information about these proteins can be found at Protein of the Month: Transposase [].; PDB: 2LDY_A 3SOO_A 2YKQ_A 2YKO_C 2YKP_B 2W7A_B 2JRB_A.
Probab=63.57 E-value=15 Score=40.52 Aligned_cols=26 Identities=19% Similarity=0.181 Sum_probs=0.0
Q ss_pred hhhhhHHHHhhhhHHHHHHHHHhhhh
Q 006114 109 VTRSEFLEKENAHLELEVEKILGELN 134 (660)
Q Consensus 109 ~~~~~~~~~~~~~~~~~~~~~~~~~~ 134 (660)
.+..+...++.+.+...+++|.+++.
T Consensus 90 ~e~~ek~~k~l~el~~~~~elkkEie 115 (370)
T PF02994_consen 90 KEEKEKSIKELNELKKRIKELKKEIE 115 (370)
T ss_dssp --------------------------
T ss_pred cchhhhhHHHHHHHHHHHHHHHHHHH
Confidence 34444555555555555555555443
No 453
>PF12231 Rif1_N: Rap1-interacting factor 1 N terminal; InterPro: IPR022031 This domain family is found in eukaryotes, and is typically between 135 and 146 amino acids in length. Rif1 is a protein which interacts with Rap1 to regulate telomere length. Interaction with telomeres limits their length. The N-terminal region contains many HEAT- and ARMADILLO- type repeats. These are helical folds which form extended curved proteins or RNA interface surfaces.
Probab=63.40 E-value=1.1e+02 Score=33.88 Aligned_cols=174 Identities=10% Similarity=0.073 Sum_probs=101.2
Q ss_pred CCHHHHHHHHHHHHHhhC---CchhHHHHHHcCCHHHHHHHHcc---------C-CCHHHHHHHHHHHHHhhcCchhHHH
Q 006114 419 EDPDVQIHAVKVVANLAA---EDINQEKIVEEGGLDALLLLLRT---------S-QNTTILRVASGAIANLAMNEMNQGL 485 (660)
Q Consensus 419 ~d~~vr~~Aa~aL~nLa~---~~en~~~Ive~GgI~~Lv~LL~~---------s-~d~~v~~~Aa~AL~nLA~~~~n~~~ 485 (660)
.+..-|.-|...|.+.-. +......+.+. ++.++..+.. + .+..+..+|..+|+.+..+|.....
T Consensus 5 ~~~~~r~daY~~l~~~l~~~~~~~~~~~l~~k--~~~l~~~i~rDi~~~~~~~~p~~~~L~~qALkll~~~l~~~~i~~~ 82 (372)
T PF12231_consen 5 SDRSSRLDAYMTLNNALKAYDNLPDRQALQDK--MSLLLQFIQRDISSSSSKGDPFDSRLVIQALKLLGFFLYHPEIVST 82 (372)
T ss_pred CCcHHHHHHHHHHHHHHHHhcCCCcHHHHHHH--HHHHHHHHHHHHhcccCCCCCcchHHHHHHHHHHHHHHccHHHHhh
Confidence 445556666666666433 12223333322 4444444421 1 2667888999999999988887776
Q ss_pred HHhcC---ccHHHHHhhcCCCCH-HHHHHHHHHHHHHhcChhHHHHHHhccHHHHHHHHhc-----CCCHHHHHHHHHHH
Q 006114 486 IMSRG---GGQLLAKTASKTDDP-QTLRMVAGALANLCGNEKLHTMLEEDGAIKALLAMVR-----SGNIDVIAQVARGL 556 (660)
Q Consensus 486 Ive~g---~I~~Ll~LL~~s~d~-~v~~~Aa~aLanLa~~~~~r~~iv~~G~V~~Lv~lL~-----s~~~~v~~~Al~aL 556 (660)
+-..- .+...+..+.++..| .+...+.|+|..=...+. ++....+..++..+. -+...+....+.++
T Consensus 83 l~~d~~~~~i~~~i~~l~~~~~~K~i~~~~l~~ls~Q~f~~~----~~~~~~~~~l~~~l~~i~~~~~s~si~~erL~i~ 158 (372)
T PF12231_consen 83 LSDDFASFIIDHSIESLQNPNSPKSICTHYLWCLSDQKFSPK----IMTSDRVERLLAALHNIKNRFPSKSIISERLNIY 158 (372)
T ss_pred CChHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHcCCCCCc----ccchhhHHHHHHHHHHhhccCCchhHHHHHHHHH
Confidence 65432 355566666554333 445455555554323222 334444444554443 35667888899999
Q ss_pred HHhhccchhhhhhcchhhhHHHhh--cChHHHHHHhhcCCCHHHHHHHHHHHHHh
Q 006114 557 ANFAKCESRAIVQGQRKGRSHLME--DSALEWLIANSKTNSASTRRHVELALCHL 609 (660)
Q Consensus 557 anLA~~~~~~~aq~~~e~r~~Li~--~G~v~~Lv~lL~s~d~~vr~~Aa~AL~nL 609 (660)
.+|....|. .++. .-.+|.++..+-+....+|..|...+..+
T Consensus 159 ~~ll~q~p~-----------~M~~~~~~W~~~l~~~l~~~~k~ir~~a~~l~~~~ 202 (372)
T PF12231_consen 159 KRLLSQFPQ-----------QMIKHADIWFPILFPDLLSSAKDIRTKAISLLLEA 202 (372)
T ss_pred HHHHHHHHH-----------HHHHHHHHHHHHHHHHHhhcchHHHHHHHHHHHHH
Confidence 998865443 2332 33778888888877777777655555444
No 454
>KOG1850 consensus Myosin-like coiled-coil protein [Cytoskeleton]
Probab=63.40 E-value=2.2e+02 Score=30.78 Aligned_cols=151 Identities=17% Similarity=0.207 Sum_probs=89.4
Q ss_pred HHHHHHHhhhhhhhhhhhhhhHHHHHHhhHHHHHHHHHHHHHHHHHHhhhhchHHHHHHHHHHHhhhhhhHHHHhhhhhH
Q 006114 147 IVQLEISLKNSKQQQLDNSSYQKVLADTTQMYEKKITELIKQLEIEHARSEGAEEQVDTMKKLISDNQKSIEQYEMENST 226 (660)
Q Consensus 147 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~e~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~ 226 (660)
..++-+.|+.++..--++......+++.+..+-++.++|--+++......+...++.. +..++.+.+.-. -.-
T Consensus 111 ~~~fqvtL~diqktla~~~~~n~klre~NieL~eKlkeL~eQy~~re~hidk~~e~ke-l~~ql~~aKlq~------~~~ 183 (391)
T KOG1850|consen 111 VEQFQVTLKDIQKTLAEGRSKNDKLREDNIELSEKLKELGEQYEEREKHIDKQIQKKE-LWEQLGKAKLQE------IKL 183 (391)
T ss_pred HHHHHhHHHHHHHHHHhcchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHhHHHHHH------HHH
Confidence 4567777777776666676666678888888888888887777766655555555555 555555544100 000
Q ss_pred HHHHHhhHHHHHHHHHHHHhhhhh---------hhhhhhhh-hHHhHHHHHHHhhhhhccccchhHH-HHHHHHHHHHHH
Q 006114 227 YQKALADTTQLYEKKIAELNKKLE---------DEHACFEG-AVEQLDMVKKLLSDYQNSNQGQKEV-HELCVKLKETRQ 295 (660)
Q Consensus 227 ~~~~l~~~~~~~~~~~~~~~~~~~---------~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~e~-~~Lk~~Le~e~~ 295 (660)
.+ ...-+..|+|=.-.+| .+.++.++ ..+|+..--.=.++.|...+...|+ ...+..+++++.
T Consensus 184 l~------a~~ee~~~~e~~~glEKd~lak~~~e~~~~~e~qlK~ql~lY~aKyeefq~tl~KSNE~F~~fK~E~ekmtK 257 (391)
T KOG1850|consen 184 LT------AKLEEASIQEKKSGLEKDELAKIMLEEMKQVEGQLKEQLALYMAKYEEFQTTLAKSNELFTKFKQEMEKMTK 257 (391)
T ss_pred HH------HHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHH
Confidence 00 1111222222111111 12222222 2334443334456777777777777 999999999999
Q ss_pred HHHhHHHHHHHHHHH
Q 006114 296 LHESAVYEVQTLKSE 310 (660)
Q Consensus 296 ~~e~~e~E~~~lks~ 310 (660)
....+|.|--.-+..
T Consensus 258 k~kklEKE~l~wr~K 272 (391)
T KOG1850|consen 258 KIKKLEKETLIWRTK 272 (391)
T ss_pred HHHHHHHHHHHHHHH
Confidence 999999888776663
No 455
>PRK10884 SH3 domain-containing protein; Provisional
Probab=62.36 E-value=60 Score=32.95 Aligned_cols=39 Identities=15% Similarity=0.147 Sum_probs=21.7
Q ss_pred hHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHhhh
Q 006114 281 KEVHELCVKLKETRQLHESAVYEVQTLKSEYKNLLEEKE 319 (660)
Q Consensus 281 ~e~~~Lk~~Le~e~~~~e~~e~E~~~lks~l~~l~~~~~ 319 (660)
+...+++..++...+....++++...|+.++..++...+
T Consensus 118 ~~~~~l~~~~~~~~~~~~~L~~~n~~L~~~l~~~~~~~~ 156 (206)
T PRK10884 118 QRTAEMQQKVAQSDSVINGLKEENQKLKNQLIVAQKKVD 156 (206)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334556666666555555566666666666555544333
No 456
>KOG1243 consensus Protein kinase [General function prediction only]
Probab=62.18 E-value=22 Score=41.88 Aligned_cols=186 Identities=12% Similarity=0.090 Sum_probs=116.0
Q ss_pred HhCCCHHHHHHhhCCCCHHHHHHHHHHHHHhhCCchhHHHHHHcCCHHHHHHHHccCCCHHHHHHHHHHHHHhhcCchhH
Q 006114 404 CDEVGLPKILQLLTSEDPDVQIHAVKVVANLAAEDINQEKIVEEGGLDALLLLLRTSQNTTILRVASGAIANLAMNEMNQ 483 (660)
Q Consensus 404 ~e~ggI~~LV~LL~s~d~~vr~~Aa~aL~nLa~~~en~~~Ive~GgI~~Lv~LL~~s~d~~v~~~Aa~AL~nLA~~~~n~ 483 (660)
+..+.+|.|+.++.+.|..+|..-+.-+-.... ..-..+++.-..|.+..-+. ++|+.+++.+..++.-|+.-=.
T Consensus 327 yq~~i~p~l~kLF~~~Dr~iR~~LL~~i~~~i~--~Lt~~~~~d~I~phv~~G~~-DTn~~Lre~Tlksm~~La~kL~-- 401 (690)
T KOG1243|consen 327 YQVRIIPVLLKLFKSPDRQIRLLLLQYIEKYID--HLTKQILNDQIFPHVALGFL-DTNATLREQTLKSMAVLAPKLS-- 401 (690)
T ss_pred cccchhhhHHHHhcCcchHHHHHHHHhHHHHhh--hcCHHhhcchhHHHHHhhcc-cCCHHHHHHHHHHHHHHHhhhc--
Confidence 556789999999999999999765554433322 23355666778999998887 8899999999999988864311
Q ss_pred HHHHhcCccHHHHHhhcCCCCHHHHHHHHHHHHHHhcChhHHHHHHhccHH-HHHHHHhcCCCHHHHHHHHHHHHHhhcc
Q 006114 484 GLIMSRGGGQLLAKTASKTDDPQTLRMVAGALANLCGNEKLHTMLEEDGAI-KALLAMVRSGNIDVIAQVARGLANFAKC 562 (660)
Q Consensus 484 ~~Ive~g~I~~Ll~LL~~s~d~~v~~~Aa~aLanLa~~~~~r~~iv~~G~V-~~Lv~lL~s~~~~v~~~Al~aLanLA~~ 562 (660)
...+....+..+..+-. ..++.++-+..-+|..++.+-. ..++.|++ .+....++++-+..+..++.+++.....
T Consensus 402 ~~~Ln~Ellr~~ar~q~-d~~~~irtntticlgki~~~l~---~~~R~~vL~~aftralkdpf~paR~a~v~~l~at~~~ 477 (690)
T KOG1243|consen 402 KRNLNGELLRYLARLQP-DEHGGIRTNTTICLGKIAPHLA---ASVRKRVLASAFTRALKDPFVPARKAGVLALAATQEY 477 (690)
T ss_pred hhhhcHHHHHHHHhhCc-cccCcccccceeeecccccccc---hhhhccccchhhhhhhcCCCCCchhhhhHHHhhcccc
Confidence 11223333445555443 3555666666666666663211 11233333 3344456666666777777776554422
Q ss_pred chhhhhhcchhhhHHHhhcChHHHHHHhhcCCCHHHHHHHHHHHHHh
Q 006114 563 ESRAIVQGQRKGRSHLMEDSALEWLIANSKTNSASTRRHVELALCHL 609 (660)
Q Consensus 563 ~~~~~aq~~~e~r~~Li~~G~v~~Lv~lL~s~d~~vr~~Aa~AL~nL 609 (660)
-+. .=+...++|.++.+..+.+..+|..|-.++..+
T Consensus 478 ~~~-----------~~va~kIlp~l~pl~vd~e~~vr~~a~~~i~~f 513 (690)
T KOG1243|consen 478 FDQ-----------SEVANKILPSLVPLTVDPEKTVRDTAEKAIRQF 513 (690)
T ss_pred cch-----------hhhhhhccccccccccCcccchhhHHHHHHHHH
Confidence 110 012245677777778888888888888877654
No 457
>PF08581 Tup_N: Tup N-terminal; InterPro: IPR013890 The N-terminal region of the Tup protein has been shown to interact with the Ssn6 transcriptional co-repressor []. ; PDB: 3VP9_B 3VP8_B.
Probab=62.00 E-value=77 Score=27.26 Aligned_cols=17 Identities=47% Similarity=0.726 Sum_probs=14.6
Q ss_pred HHHHHHHHHHHHhhhhh
Q 006114 234 TTQLYEKKIAELNKKLE 250 (660)
Q Consensus 234 ~~~~~~~~~~~~~~~~~ 250 (660)
..+.||..|+-|..+||
T Consensus 58 mK~~YEeEI~rLr~eLe 74 (79)
T PF08581_consen 58 MKQQYEEEIARLRRELE 74 (79)
T ss_dssp HHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 45679999999999987
No 458
>KOG4438 consensus Centromere-associated protein NUF2 [Cell cycle control, cell division, chromosome partitioning]
Probab=61.67 E-value=2.8e+02 Score=31.26 Aligned_cols=175 Identities=20% Similarity=0.227 Sum_probs=0.0
Q ss_pred hHHHHHHhhHHHHHHHHHHHHHHHHHHhhhhchHHHHHHHHHHHhhhhhhHHHHhhhhhHHHHHHhhHHHHHHHHHHHHh
Q 006114 167 YQKVLADTTQMYEKKITELIKQLEIEHARSEGAEEQVDTMKKLISDNQKSIEQYEMENSTYQKALADTTQLYEKKIAELN 246 (660)
Q Consensus 167 ~~~~~~~~~~~~~~~~~~l~~~l~~e~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~ 246 (660)
..+-++++-+.++-++..+.++++.--+....=++++..|+-...++.+|+- .-+...+-.+++-+.+-.+.+.+-.
T Consensus 139 q~eslle~~~q~da~~qq~~~ele~~d~~~~~d~ee~kqlEe~ieeL~qsl~---kd~~~~~~l~~e~n~~k~s~~s~~~ 215 (446)
T KOG4438|consen 139 QLESLLELRKQLDAKYQQALKELERFDEDVEEDEEEVKQLEENIEELNQSLL---KDFNQQMSLLAEYNKMKKSSTSEKN 215 (446)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhcccccccHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHhHhhHHHHH
Q ss_pred hhhhhhhhhhhhhHHhHHHHHHHhhhhhccccchhHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHhhhhccHHHH
Q 006114 247 KKLEDEHACFEGAVEQLDMVKKLLSDYQNSNQGQKEVHELCVKLKETRQLHESAVYEVQTLKSEYKNLLEEKETMSDELQ 326 (660)
Q Consensus 247 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~Lk~~Le~e~~~~e~~e~E~~~lks~l~~l~~~~~~~~eel~ 326 (660)
+.+.-.---...+++--+-++. .+.++.++++.......+..+...++-.++..-..-|.+-.....+...|+.
T Consensus 216 k~l~al~llv~tLee~~~~Lkt------qIV~sPeKL~~~leemk~~l~k~k~~~~~l~~K~~iL~ekv~~~qti~~e~~ 289 (446)
T KOG4438|consen 216 KILNALKLLVVTLEENANCLKT------QIVQSPEKLKEALEEMKDLLQKEKSAMVELQEKAKILEEKVTNLQTIEKELK 289 (446)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH------HHcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhHHHHHHHHHHH
Q ss_pred HHHHHHHHHHHHhhhhHHHHHHHH
Q 006114 327 AARQRLLVEEKQRKAIEYELVKLK 350 (660)
Q Consensus 327 ~~~k~l~~e~~~rkkLe~E~~~l~ 350 (660)
...+.+.+.+..-.+++.....+.
T Consensus 290 ~~lk~i~~~~~e~d~~Et~~v~lk 313 (446)
T KOG4438|consen 290 ALLKKISSDGVEYDSLETKVVELK 313 (446)
T ss_pred HHHHHHHHhhhhhhhhHHHHHHHH
No 459
>PF11865 DUF3385: Domain of unknown function (DUF3385); InterPro: IPR024585 This uncharacterised domain is is typically between 160 to 172 amino acids in length. It is found in the phosphatidylinositol kinase-related protein kinases TOR (target of rapamycin). In Saccharomyces cerevisiae the TOR proteins, TOR1 and TOR2, regulate growth in a rapamycin-sensitive manner [].
Probab=61.27 E-value=53 Score=31.82 Aligned_cols=30 Identities=27% Similarity=0.454 Sum_probs=22.8
Q ss_pred HHHHHHhhCC-CCHHHHHHHHHHHHHhhCCc
Q 006114 409 LPKILQLLTS-EDPDVQIHAVKVVANLAAED 438 (660)
Q Consensus 409 I~~LV~LL~s-~d~~vr~~Aa~aL~nLa~~~ 438 (660)
++.|+.+|+. .+..+|+.++++|+.|..-+
T Consensus 12 L~~L~~iLk~e~s~~iR~E~lr~lGilGALD 42 (160)
T PF11865_consen 12 LDILLNILKTEQSQSIRREALRVLGILGALD 42 (160)
T ss_pred HHHHHHHHHhCCCHHHHHHHHHHhhhccccC
Confidence 4456666664 46899999999999998833
No 460
>PF02183 HALZ: Homeobox associated leucine zipper; InterPro: IPR003106 This region is a plant specific leucine zipper that is always found associated with a homeobox []. ; GO: 0003677 DNA binding, 0006355 regulation of transcription, DNA-dependent, 0005634 nucleus
Probab=61.17 E-value=23 Score=27.06 Aligned_cols=41 Identities=32% Similarity=0.486 Sum_probs=27.8
Q ss_pred HHHHHHHHHhhHHHHHHhhhhhhhHHHHhhhhHHHHHHHHHhhhh
Q 006114 90 FEKQLRESQISYDESMRNLVTRSEFLEKENAHLELEVEKILGELN 134 (660)
Q Consensus 90 ~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 134 (660)
||+.-.-.+.+|+ +|...++.|.+||..|-.||..|...++
T Consensus 3 lE~Dy~~LK~~yd----~Lk~~~~~L~~E~~~L~aev~~L~~kl~ 43 (45)
T PF02183_consen 3 LERDYDALKASYD----SLKAEYDSLKKENEKLRAEVQELKEKLQ 43 (45)
T ss_pred hHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence 3444444445564 4577788888888888888888877664
No 461
>PF06705 SF-assemblin: SF-assemblin/beta giardin
Probab=61.10 E-value=2.1e+02 Score=29.62 Aligned_cols=105 Identities=19% Similarity=0.281 Sum_probs=48.7
Q ss_pred HHHHHHHHHHhhhh-hhhhhhhhhhHHHHHHhhHHHHHHHH-HHHHHHHHHHhhhhchHHHHHHHHHHHhhhhhhHHHHh
Q 006114 144 REKIVQLEISLKNS-KQQQLDNSSYQKVLADTTQMYEKKIT-ELIKQLEIEHARSEGAEEQVDTMKKLISDNQKSIEQYE 221 (660)
Q Consensus 144 ~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~-~l~~~l~~e~~~~~~~~~~~~~l~~~l~~~~~~~~~~~ 221 (660)
.++...++-.|++- .++.-....+...+.+.++.+++.|. |.+...+....-....+.+++.|...+.
T Consensus 11 ~e~~~~f~~~le~e~~~Rr~~ee~r~~~i~e~i~~Le~~l~~E~k~R~E~~~~lq~~~e~~i~~~~~~v~---------- 80 (247)
T PF06705_consen 11 NERFSGFESDLENEKRQRREQEEQRFQDIKEQIQKLEKALEAEVKRRVESNKKLQSKFEEQINNMQERVE---------- 80 (247)
T ss_pred HHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----------
Confidence 34444444444332 33444445555555555555555443 2222233223222223333332222221
Q ss_pred hhhhHHHHHHhhHHHHHHHHHHHHhhhhhhhhhhhhh
Q 006114 222 MENSTYQKALADTTQLYEKKIAELNKKLEDEHACFEG 258 (660)
Q Consensus 222 ~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~ 258 (660)
..-......++.+-.....+|..|...+..|.+....
T Consensus 81 ~~~~~~~~~~~~~l~~L~~ri~~L~~~i~ee~~~r~~ 117 (247)
T PF06705_consen 81 NQISEKQEQLQSRLDSLNDRIEALEEEIQEEKEERPQ 117 (247)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhH
Confidence 2224455555556666666666776666666655444
No 462
>cd07655 F-BAR_PACSIN The F-BAR (FES-CIP4 Homology and Bin/Amphiphysin/Rvs) domain of Protein kinase C and Casein kinase Substrate in Neurons (PACSIN) proteins. F-BAR domains are dimerization modules that bind and bend membranes and are found in proteins involved in membrane dynamics and actin reorganization. Protein kinase C and Casein kinase Substrate in Neurons (PACSIN) proteins, also called Synaptic dynamin-associated proteins (Syndapins), act as regulators of cytoskeletal and membrane dynamics. They bind both dynamin and Wiskott-Aldrich syndrome protein (WASP), and may provide direct links between the actin cytoskeletal machinery through WASP and dynamin-dependent endocytosis. Vetebrates harbor three isoforms with distinct expression patterns and specific functions. PACSINs contain an N-terminal F-BAR domain and a C-terminal SH3 domain. F-BAR domains form banana-shaped dimers with a positively-charged concave surface that binds to negatively-charged lipid membranes. They can induce
Probab=60.92 E-value=2.2e+02 Score=29.78 Aligned_cols=99 Identities=15% Similarity=0.274 Sum_probs=53.5
Q ss_pred HHHHHHhhHHHHHHHHHHHH---HHHHHHhhhhchHHHHHHHHHHHhhhhhhHHHHhhhhhHHHH---HHhhHHHHHHHH
Q 006114 168 QKVLADTTQMYEKKITELIK---QLEIEHARSEGAEEQVDTMKKLISDNQKSIEQYEMENSTYQK---ALADTTQLYEKK 241 (660)
Q Consensus 168 ~~~~~~~~~~~~~~~~~l~~---~l~~e~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~---~l~~~~~~~~~~ 241 (660)
.+.+.+....|+..=++... +++.-.+-.....+++..++..+........... ..|.. .++++++-|+..
T Consensus 132 ~~~l~kaKk~Y~~~cke~e~a~~~~~~~~~d~~~~~~eleK~~~k~~k~~~~~~~~~---~~Y~~~l~~~n~~~~~y~~~ 208 (258)
T cd07655 132 LKKVEKAKKAYHAACKAEKSAQKQENNAKSDTSLSPDQVKKLQDKVEKCKQEVSKTK---DKYEKALEDLNKYNPRYMED 208 (258)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhcccCccCCHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHhhhHHHHHH
Confidence 45566777777755444433 3332222234456777777776666654443222 33444 445556678887
Q ss_pred HHHHhhhhhhhhhhhhhhHHhHHHHHHHhhhhhc
Q 006114 242 IAELNKKLEDEHACFEGAVEQLDMVKKLLSDYQN 275 (660)
Q Consensus 242 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 275 (660)
....-.++.+-. ++.++.+|..|..+..
T Consensus 209 m~~~~~~~Q~lE------e~Ri~~lk~~l~~y~~ 236 (258)
T cd07655 209 MEQVFDKCQEFE------EKRLDFFKEILLSYHR 236 (258)
T ss_pred HHHHHHHHHHHH------HHHHHHHHHHHHHHHH
Confidence 777666554311 3455556666555544
No 463
>PF09787 Golgin_A5: Golgin subfamily A member 5; InterPro: IPR019177 This entry represents a family of proteins involved in maintaining Golgi structure. They stimulate the formation of Golgi stacks and ribbons, and are involved in intra-Golgi retrograde transport. Two main interactions have been characterised: one with RAB1A that has been activated by GTP-binding and another with isoform CASP of CUTL1 [].
Probab=60.91 E-value=3.1e+02 Score=31.64 Aligned_cols=26 Identities=27% Similarity=0.262 Sum_probs=17.1
Q ss_pred hhhhHHHHHHhhHHHHHHHHHHHHhh
Q 006114 222 MENSTYQKALADTTQLYEKKIAELNK 247 (660)
Q Consensus 222 ~~~~~~~~~l~~~~~~~~~~~~~~~~ 247 (660)
.+=..|....+.+.|.=||.|+.|..
T Consensus 235 ~el~~Yk~kA~~iLq~kEklI~~LK~ 260 (511)
T PF09787_consen 235 AELQQYKQKAQRILQSKEKLIESLKE 260 (511)
T ss_pred HHHHHHHHHHHHHhcCHHHHHHHHHh
Confidence 44445554556666777888888776
No 464
>PF15188 CCDC-167: Coiled-coil domain-containing protein 167
Probab=60.75 E-value=34 Score=29.87 Aligned_cols=56 Identities=20% Similarity=0.348 Sum_probs=44.7
Q ss_pred HHHhhHHHHHHHHHHHHHHHHHHh----------hhhchHHHHHHHHHHHhhhhhhHHHHhhhhhH
Q 006114 171 LADTTQMYEKKITELIKQLEIEHA----------RSEGAEEQVDTMKKLISDNQKSIEQYEMENST 226 (660)
Q Consensus 171 ~~~~~~~~~~~~~~l~~~l~~e~~----------~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~ 226 (660)
++.+|..+|.+++..+.+|+.--. .|..+++|...++..+....+..++.-.||+-
T Consensus 3 V~~eId~lEekl~~cr~~le~ve~rL~~~eLs~e~R~~lE~E~~~l~~~l~~~E~eL~~LrkENrK 68 (85)
T PF15188_consen 3 VAKEIDGLEEKLAQCRRRLEAVESRLRRRELSPEARRSLEKELNELKEKLENNEKELKLLRKENRK 68 (85)
T ss_pred HHHHHhhHHHHHHHHHHHHHHHHHHHcccCCChHHHHHHHHHHHHHHHHhhccHHHHHHHHHhhhh
Confidence 466788888888888888876533 46788999999999999998888888888864
No 465
>KOG4657 consensus Uncharacterized conserved protein [Function unknown]
Probab=60.74 E-value=2.1e+02 Score=29.53 Aligned_cols=82 Identities=13% Similarity=0.212 Sum_probs=49.5
Q ss_pred HHHhhHHHHHHHHHHHHHHHHHHhhhhchHHHHHHHHHHHhhhhhhHHHHhhhhhHHHHHHhhHHHHHHHHHHHHhhhhh
Q 006114 171 LADTTQMYEKKITELIKQLEIEHARSEGAEEQVDTMKKLISDNQKSIEQYEMENSTYQKALADTTQLYEKKIAELNKKLE 250 (660)
Q Consensus 171 ~~~~~~~~~~~~~~l~~~l~~e~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~ 250 (660)
+-.+...++-+|.+....++.+.++....+.++.-++..+.-+-..++-+..|=+-|.++|+.-.|..-|+++.--|+.+
T Consensus 63 l~~~l~etene~~~~neL~~ek~~~q~~ieqeik~~q~elEvl~~n~Q~lkeE~dd~keiIs~kr~~~~Ka~e~~~kRkQ 142 (246)
T KOG4657|consen 63 LKADLRETENELVKVNELKTEKEARQMGIEQEIKATQSELEVLRRNLQLLKEEKDDSKEIISQKRQALSKAKENAGKRKQ 142 (246)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 34444555556666666666666666666666665555555555445455556667777777666666666666666665
Q ss_pred hh
Q 006114 251 DE 252 (660)
Q Consensus 251 ~~ 252 (660)
|+
T Consensus 143 ds 144 (246)
T KOG4657|consen 143 DS 144 (246)
T ss_pred hh
Confidence 44
No 466
>PF15372 DUF4600: Domain of unknown function (DUF4600)
Probab=60.48 E-value=1.5e+02 Score=27.91 Aligned_cols=32 Identities=19% Similarity=0.165 Sum_probs=26.1
Q ss_pred hhhhhhhHHHHhhhhHHHHHHHHHhhhhhhhh
Q 006114 107 NLVTRSEFLEKENAHLELEVEKILGELNHQKD 138 (660)
Q Consensus 107 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 138 (660)
..++|||-.-.=|..||..+..|...+.+-+|
T Consensus 5 EWktRYEtQ~E~N~QLekqi~~l~~kiek~r~ 36 (129)
T PF15372_consen 5 EWKTRYETQLELNDQLEKQIIILREKIEKIRG 36 (129)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhC
Confidence 35788998888899999998888888877666
No 467
>PF08216 CTNNBL: Catenin-beta-like, Arm-motif containing nuclear; InterPro: IPR013180 This domain is found in eukaryotic proteins. A human nuclear protein with this domain (Q8WYA6 from SWISSPROT) is thought to have a role in apoptosis [].
Probab=60.35 E-value=9.2 Score=34.80 Aligned_cols=42 Identities=26% Similarity=0.285 Sum_probs=35.9
Q ss_pred HHHHHHHHHHhcChhHHHHHHhccHHHHHHHHhcCCCHHHHH
Q 006114 509 RMVAGALANLCGNEKLHTMLEEDGAIKALLAMVRSGNIDVIA 550 (660)
Q Consensus 509 ~~Aa~aLanLa~~~~~r~~iv~~G~V~~Lv~lL~s~~~~v~~ 550 (660)
-.....+..|+..|+.-..+++.|+++.|+++|.+.|.++..
T Consensus 64 d~~Ik~l~~La~~P~LYp~lv~l~~v~sL~~LL~HeN~DIai 105 (108)
T PF08216_consen 64 DEEIKKLSVLATAPELYPELVELGAVPSLLGLLSHENTDIAI 105 (108)
T ss_pred HHHHHHHHHccCChhHHHHHHHcCCHHHHHHHHCCCCcceeh
Confidence 345567788889999999999999999999999988887644
No 468
>PF10146 zf-C4H2: Zinc finger-containing protein ; InterPro: IPR018482 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. This entry represents a family of proteins which appears to have a highly conserved zinc finger domain at the C-terminal end, described as -C-X2-CH-X3-H-X5-C-X2-C-. The structure is predicted to contain a coiled coil. Members of this family are annotated as being tumour-associated antigen HCA127 in humans, but this could not be confirmed.
Probab=59.67 E-value=1.2e+02 Score=31.29 Aligned_cols=39 Identities=8% Similarity=0.146 Sum_probs=18.4
Q ss_pred HHHhhHHHHHHHHHHHHHHHHHHhhhhchHHHHHHHHHH
Q 006114 171 LADTTQMYEKKITELIKQLEIEHARSEGAEEQVDTMKKL 209 (660)
Q Consensus 171 ~~~~~~~~~~~~~~l~~~l~~e~~~~~~~~~~~~~l~~~ 209 (660)
|.++++..+.+-.+.......-.+.+..+.++++.+...
T Consensus 65 lE~iIkqa~~er~~~~~~i~r~~eey~~Lk~~in~~R~e 103 (230)
T PF10146_consen 65 LENIIKQAESERNKRQEKIQRLYEEYKPLKDEINELRKE 103 (230)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333444444443333333333344555566666666555
No 469
>cd03569 VHS_Hrs_Vps27p VHS domain family, Hrs and Vps27p subfamily; composed of Hrs (Hepatocyte growth factor-regulated tyrosine kinase substrate) and its yeast homolog Vps27p (vacuolar protein sorting). The VHS domain, an essential part of Hrs/Vps27p, has a superhelical structure similar to the structure of ARM (Armadillo) repeats and is present at the N-termini of proteins. Hrs also contains a FYVE (Fab1p, YOTB, Vac1p, and EEA1) zinc finger domain C-terminal to VHS, as well as two coiled-coil domains. Hrs has been proposed to play a role in at least three vesicle trafficking events: exocytosis, endocytosis, and endosome to lysosome trafficking. Hrs is involved in promoting rapid recycling of endocytosed signaling receptors to the plasma membrane.
Probab=59.37 E-value=34 Score=32.53 Aligned_cols=71 Identities=18% Similarity=0.273 Sum_probs=58.8
Q ss_pred CHHHHHHhhCCCCHHHHHHHHHHHHHhhCC--chhHHHHHHcCCHHHHHHHHccCCCHHHHHHHHHHHHHhhc
Q 006114 408 GLPKILQLLTSEDPDVQIHAVKVVANLAAE--DINQEKIVEEGGLDALLLLLRTSQNTTILRVASGAIANLAM 478 (660)
Q Consensus 408 gI~~LV~LL~s~d~~vr~~Aa~aL~nLa~~--~en~~~Ive~GgI~~Lv~LL~~s~d~~v~~~Aa~AL~nLA~ 478 (660)
++..|..-|.++++.++..|+.+|-.|..+ ......|...+.+..|+.++...+++.|+..++.+|.+-+.
T Consensus 42 a~ral~krl~~~n~~vql~AL~LLe~~vkNCG~~fh~evas~~fl~~l~~l~~~~~~~~Vk~kil~li~~W~~ 114 (142)
T cd03569 42 AMRALKKRLLSKNPNVQLYALLLLESCVKNCGTHFHDEVASREFMDELKDLIKTTKNEEVRQKILELIQAWAL 114 (142)
T ss_pred HHHHHHHHHcCCChHHHHHHHHHHHHHHHHCCHHHHHHHhhHHHHHHHHHHHcccCCHHHHHHHHHHHHHHHH
Confidence 456667777889999999999999988884 55677888888899999999867788999988888877653
No 470
>cd03561 VHS VHS domain family; The VHS domain is present in Vps27 (Vacuolar Protein Sorting), Hrs (Hepatocyte growth factor-regulated tyrosine kinase substrate) and STAM (Signal Transducing Adaptor Molecule). It has a superhelical structure similar to that of the ARM (Armadillo) repeats and is present at the N-termini of proteins involved in intracellular membrane trafficking. There are four general groups of VHS domain containing proteins based on their association with other domains. The first group consists of proteins of the STAM/EAST/Hbp family which has the domain composition VHS-SH3-ITAM. The second consists of proteins with a FYVE domain C-terminal to VHS. The third consists of GGA proteins with a domain composition VHS-GAT (GGA and TOM)-GAE (gamma-adaptin ear) domain. The fourth consists of proteins with a VHS domain alone or with domains other than those mentioned above. In GGA proteins, VHS domains are involved in cargo recognition in trans-Golgi, thereby having a general me
Probab=59.07 E-value=42 Score=31.27 Aligned_cols=71 Identities=14% Similarity=0.143 Sum_probs=57.3
Q ss_pred CHHHHHHhhCCCCHHHHHHHHHHHHHhhCC--chhHHHHHHcCCHHHHHHHHcc--CCCHHHHHHHHHHHHHhhc
Q 006114 408 GLPKILQLLTSEDPDVQIHAVKVVANLAAE--DINQEKIVEEGGLDALLLLLRT--SQNTTILRVASGAIANLAM 478 (660)
Q Consensus 408 gI~~LV~LL~s~d~~vr~~Aa~aL~nLa~~--~en~~~Ive~GgI~~Lv~LL~~--s~d~~v~~~Aa~AL~nLA~ 478 (660)
++..|..-|.++++.++..|+.+|-.|..+ +.....|.....+..|+.++.. ..++.|+..+...|.+.+.
T Consensus 38 a~raL~krl~~~n~~vql~AL~lLd~~vkNcg~~f~~~i~s~~fl~~l~~l~~~~~~~~~~Vk~kil~ll~~W~~ 112 (133)
T cd03561 38 AARAIRKKIKYGNPHVQLLALTLLELLVKNCGKPFHLQVADKEFLLELVKIAKNSPKYDPKVREKALELILAWSE 112 (133)
T ss_pred HHHHHHHHHcCCCHHHHHHHHHHHHHHHHhCChHHHHHHhhHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHHHHH
Confidence 356666777899999999999999999883 4567778877788889999975 4688899999988887754
No 471
>PF08317 Spc7: Spc7 kinetochore protein; InterPro: IPR013253 This entry consists of cell division proteins which are required for kinetochore-spindle association [].
Probab=59.03 E-value=2.6e+02 Score=30.19 Aligned_cols=49 Identities=16% Similarity=0.224 Sum_probs=20.1
Q ss_pred HHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHhhhhccHHHHHHHHH
Q 006114 283 VHELCVKLKETRQLHESAVYEVQTLKSEYKNLLEEKETMSDELQAARQR 331 (660)
Q Consensus 283 ~~~Lk~~Le~e~~~~e~~e~E~~~lks~l~~l~~~~~~~~eel~~~~k~ 331 (660)
+..+...++........++.++..++..+..+........++|....+.
T Consensus 218 L~~~~~~i~~~k~~l~el~~el~~l~~~i~~~~~~k~~l~~eI~e~~~~ 266 (325)
T PF08317_consen 218 LAEQKEEIEAKKKELAELQEELEELEEKIEELEEQKQELLAEIAEAEKI 266 (325)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3333333333333334444444444444444444444334444444433
No 472
>PF12711 Kinesin-relat_1: Kinesin motor; InterPro: IPR024658 Kinesin [, , ] is a microtubule-associated force-producing protein that may play a role in organelle transport. The kinesin motor activity is directed toward the microtubule's plus end. Kinesin is an oligomeric complex composed of two heavy chains and two light chains. The maintenance of the quaternary structure does not require interchain disulphide bonds. The heavy chain is composed of three structural domains: a large globular N-terminal domain which is responsible for the motor activity of kinesin (it is known to hydrolyse ATP, to bind and move on microtubules), a central alpha-helical coiled coil domain that mediates the heavy chain dimerisation; and a small globular C-terminal domain which interacts with other proteins (such as the kinesin light chains), vesicles and membranous organelles. A number of proteins have been recently found that contain a domain similar to that of the kinesin 'motor' domain [, ]: Drosophila melanogaster claret segregational protein (ncd). Ncd is required for normal chromosomal segregation in meiosis, in females, and in early mitotic divisions of the embryo. The ncd motor activity is directed toward the microtubule's minus end. Homo sapiens CENP-E []. CENP-E is a protein that associates with kinetochores during chromosome congression, relocates to the spindle midzone at anaphase, and is quantitatively discarded at the end of the cell division. CENP-E is probably an important motor molecule in chromosome movement and/or spindle elongation. H. sapiens mitotic kinesin-like protein-1 (MKLP-1), a motor protein whose activity is directed toward the microtubule's plus end. Saccharomyces cerevisiae KAR3 protein, which is essential for nuclear fusion during mating. KAR3 may mediate microtubule sliding during nuclear fusion and possibly mitosis. S. cerevisiae CIN8 and KIP1 proteins which are required for the assembly of the mitotic spindle. Both proteins seem to interact with spindle microtubules to produce an outwardly directed force acting upon the poles. Emericella nidulans (Aspergillus nidulans) bimC, which plays an important role in nuclear division. A. nidulans klpA. Caenorhabditis elegans unc-104, which may be required for the transport of substances needed for neuronal cell differentiation. C. elegans osm-3. Xenopus laevis Eg5, which may be involved in mitosis. Arabidopsis thaliana KatA, KatB and katC. Chlamydomonas reinhardtii FLA10/KHP1 and KLP1. Both proteins seem to play a role in the rotation or twisting of the microtubules of the flagella. C. elegans hypothetical protein T09A5.2. Kinesin-like proteins KLP2 (or KIF15) also contain a kinesin 'motor' domain. They are involved in mitotic spindle assembly, playing a role in positioning spindle poles during mitosis, specifically at prometaphase []. This entry represents a domain of unknown function found in this type of kinesin-like proteins.
Probab=58.75 E-value=47 Score=29.08 Aligned_cols=65 Identities=15% Similarity=0.232 Sum_probs=47.0
Q ss_pred HHHHhhhhHHHHHHHHHhhhhhhhhhhhhHHHHHHHHHHHhhhhhhhhhhhhhhHHHHHHhhHHHHHHHHHHHHHHHHHH
Q 006114 114 FLEKENAHLELEVEKILGELNHQKDQNNLKREKIVQLEISLKNSKQQQLDNSSYQKVLADTTQMYEKKITELIKQLEIEH 193 (660)
Q Consensus 114 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~e~ 193 (660)
++..+|..|..||+=|...+.+ +.+..-.|.++.++-.++..|.+.. +.
T Consensus 21 ~~~~e~~~L~eEI~~Lr~qve~-----------------------------nPevtr~A~EN~rL~ee~rrl~~f~--~~ 69 (86)
T PF12711_consen 21 YLEEENEALKEEIQLLREQVEH-----------------------------NPEVTRFAMENIRLREELRRLQSFY--VE 69 (86)
T ss_pred hhHHHHHHHHHHHHHHHHHHHh-----------------------------CHHHHHHHHHHHHHHHHHHHHHHHH--Hh
Confidence 6677778888877766555433 3444455788888888898888877 67
Q ss_pred hhhhchHHHHHHHHHH
Q 006114 194 ARSEGAEEQVDTMKKL 209 (660)
Q Consensus 194 ~~~~~~~~~~~~l~~~ 209 (660)
+.+..+-.++..|+.+
T Consensus 70 gerE~l~~eis~L~~~ 85 (86)
T PF12711_consen 70 GEREMLLQEISELRDQ 85 (86)
T ss_pred hHHHHHHHHHHHHHhh
Confidence 7777777777777765
No 473
>COG2433 Uncharacterized conserved protein [Function unknown]
Probab=58.68 E-value=1e+02 Score=36.01 Aligned_cols=84 Identities=18% Similarity=0.319 Sum_probs=44.9
Q ss_pred HHHHHhhHHHHHHHHHHHHHHHHHHhhhhchHHHHHHHHHHHhhhhhhHHHHhhhhhHHHHHHhhHHHHHHHHHHHHhhh
Q 006114 169 KVLADTTQMYEKKITELIKQLEIEHARSEGAEEQVDTMKKLISDNQKSIEQYEMENSTYQKALADTTQLYEKKIAELNKK 248 (660)
Q Consensus 169 ~~~~~~~~~~~~~~~~l~~~l~~e~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~ 248 (660)
+.+..+.+.++.++++|.-.++.-+ .++..|+..|..+.....+....+-.+ ++-+..|..|.+.
T Consensus 425 ~~~~~~ve~l~~e~~~L~~~~ee~k-------~eie~L~~~l~~~~r~~~~~~~~~rei--------~~~~~~I~~L~~~ 489 (652)
T COG2433 425 KKLEETVERLEEENSELKRELEELK-------REIEKLESELERFRREVRDKVRKDREI--------RARDRRIERLEKE 489 (652)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHhhhHHH--------HHHHHHHHHHHHH
Confidence 3455555555555555555544333 444445555555544333222323222 3456788888888
Q ss_pred hhhhhhhhhhhHHhHHHHH
Q 006114 249 LEDEHACFEGAVEQLDMVK 267 (660)
Q Consensus 249 ~~~~~~~~~~~~~~~~~~~ 267 (660)
|+.+..+-+.++..|..++
T Consensus 490 L~e~~~~ve~L~~~l~~l~ 508 (652)
T COG2433 490 LEEKKKRVEELERKLAELR 508 (652)
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 8877666666555555444
No 474
>PF08614 ATG16: Autophagy protein 16 (ATG16); InterPro: IPR013923 Macroautophagy is a bulk degradation process induced by starvation in eukaryotic cells. In yeast, 15 Apg proteins coordinate the formation of autophagosomes. No molecule involved in autophagy has yet been identified in higher eukaryotes []. The pre-autophagosomal structure contains at least five Apg proteins: Apg1p, Apg2p, Apg5p, Aut7p/Apg8p and Apg16p. It is found in the vacuole []. The C-terminal glycine of Apg12p is conjugated to a lysine residue of Apg5p via an isopeptide bond. During autophagy, cytoplasmic components are enclosed in autophagosomes and delivered to lysosomes/vacuoles. Auotphagy protein 16 (Apg16) has been shown to be bind to Apg5 and is required for the function of the Apg12p-Apg5p conjugate []. Autophagy protein 5 (Apg5) is directly required for the import of aminopeptidase I via the cytoplasm-to-vacuole targeting pathway []. This entry represents auotphagy protein 16 (Apg16), which is required for the function of the Apg12p-Apg5p conjugate.; PDB: 3A7O_D 3A7P_B.
Probab=58.57 E-value=97 Score=30.85 Aligned_cols=109 Identities=17% Similarity=0.228 Sum_probs=42.6
Q ss_pred hHHHHHHHHHhhhhhhhhhhhhHHHHHHHHHHHhhhhhhhhhhhhhhHHHHHHhhHHHHHHHHHHHHHHHHHHhhhhchH
Q 006114 121 HLELEVEKILGELNHQKDQNNLKREKIVQLEISLKNSKQQQLDNSSYQKVLADTTQMYEKKITELIKQLEIEHARSEGAE 200 (660)
Q Consensus 121 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~e~~~~~~~~ 200 (660)
+++.-+-.+..+|..-.-.++.+...+..+...+......-.+...+...+..++..++.+|..+.-.+..-......+.
T Consensus 71 ~le~~~~~l~~ELael~r~~~el~~~L~~~~~~l~~l~~~~~~~~~~l~~l~~~~~~L~~~~~~l~~~l~ek~k~~e~l~ 150 (194)
T PF08614_consen 71 SLEQKLAKLQEELAELYRSKGELAQQLVELNDELQELEKELSEKERRLAELEAELAQLEEKIKDLEEELKEKNKANEILQ 150 (194)
T ss_dssp -------------------------------------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred ccccccccccccccccccccccccccccccccccchhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44555555666665555566667777777766666666555566666666777777777777776666666666666666
Q ss_pred HHHHHHHHHHhhhhhhHHHHhhhhhHHHH
Q 006114 201 EQVDTMKKLISDNQKSIEQYEMENSTYQK 229 (660)
Q Consensus 201 ~~~~~l~~~l~~~~~~~~~~~~~~~~~~~ 229 (660)
||+..|...++-........+.||..+-+
T Consensus 151 DE~~~L~l~~~~~e~k~~~l~~En~~Lv~ 179 (194)
T PF08614_consen 151 DELQALQLQLNMLEEKLRKLEEENRELVE 179 (194)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 66666666666666555555566655443
No 475
>PF15294 Leu_zip: Leucine zipper
Probab=58.54 E-value=2.5e+02 Score=29.86 Aligned_cols=46 Identities=11% Similarity=0.188 Sum_probs=31.1
Q ss_pred HHHHhhHHHHHHHHHHHHHHHHHHhhhhchHHHHHHHHHHHhhhhh
Q 006114 170 VLADTTQMYEKKITELIKQLEIEHARSEGAEEQVDTMKKLISDNQK 215 (660)
Q Consensus 170 ~~~~~~~~~~~~~~~l~~~l~~e~~~~~~~~~~~~~l~~~l~~~~~ 215 (660)
-+.++|.++..|-..|+..|-.=-.++..+=++-..|+.+|.+++.
T Consensus 129 ll~kEi~rLq~EN~kLk~rl~~le~~at~~l~Ek~kl~~~L~~lq~ 174 (278)
T PF15294_consen 129 LLNKEIDRLQEENEKLKERLKSLEKQATSALDEKSKLEAQLKELQD 174 (278)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4556666666666666666665555666777777778888888774
No 476
>KOG1822 consensus Uncharacterized conserved protein [Function unknown]
Probab=58.22 E-value=1.2e+02 Score=40.09 Aligned_cols=29 Identities=21% Similarity=0.168 Sum_probs=23.3
Q ss_pred ccHHHHHhhcCCCCHHHHHHHHHHHHHHh
Q 006114 491 GGQLLAKTASKTDDPQTLRMVAGALANLC 519 (660)
Q Consensus 491 ~I~~Ll~LL~~s~d~~v~~~Aa~aLanLa 519 (660)
++..++.+..++.+|.|+..+..+++-+.
T Consensus 959 ~v~illal~~Ds~~p~VqtwSL~al~~i~ 987 (2067)
T KOG1822|consen 959 SVSILLALATDSTSPVVQTWSLHALALIL 987 (2067)
T ss_pred HHHHHHHHhhcCCCchhhhhHHHHHHHHH
Confidence 46678888888888899998888887775
No 477
>PF06005 DUF904: Protein of unknown function (DUF904); InterPro: IPR009252 Cell division protein ZapB is a non-essential, abundant cell division factor that is required for proper Z-ring formation. It is recruited early to the divisome by direct interaction with FtsZ, stimulating Z-ring assembly and thereby promoting cell division earlier in the cell cycle. Its recruitment to the Z-ring requires functional FtsA or ZipA.; GO: 0000917 barrier septum formation, 0043093 cytokinesis by binary fission, 0005737 cytoplasm; PDB: 2JEE_A.
Probab=58.17 E-value=87 Score=26.43 Aligned_cols=50 Identities=14% Similarity=0.097 Sum_probs=39.1
Q ss_pred hhhHHHHHHhhHHHHHHHHHHHHHHHHHHhhhhchHHHHHHHHHHHhhhh
Q 006114 165 SSYQKVLADTTQMYEKKITELIKQLEIEHARSEGAEEQVDTMKKLISDNQ 214 (660)
Q Consensus 165 ~~~~~~~~~~~~~~~~~~~~l~~~l~~e~~~~~~~~~~~~~l~~~l~~~~ 214 (660)
..++..+-+|++-+..++.+|+..-..-...+..+.+++..|+.....++
T Consensus 10 E~ki~~aveti~~Lq~e~eeLke~n~~L~~e~~~L~~en~~L~~e~~~~~ 59 (72)
T PF06005_consen 10 EEKIQQAVETIALLQMENEELKEKNNELKEENEELKEENEQLKQERNAWQ 59 (72)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45666788999999999999988766666777778888887777666666
No 478
>PF08826 DMPK_coil: DMPK coiled coil domain like; InterPro: IPR014930 This domain is found in the myotonic dystrophy protein kinase (DMPK) and adopts a coiled coil structure. It plays a role in dimerisation []. ; GO: 0004674 protein serine/threonine kinase activity, 0005524 ATP binding, 0006468 protein phosphorylation; PDB: 1WT6_D.
Probab=57.57 E-value=66 Score=26.32 Aligned_cols=51 Identities=25% Similarity=0.331 Sum_probs=33.4
Q ss_pred HHHHHHHHHHHhhhhchHHHHHHHHHHHhhHHHHHHhhhhhhhHHHHhhhhHHHHHHHHHhhh
Q 006114 71 LLTAKIEMQQKLRENDKYEFEKQLRESQISYDESMRNLVTRSEFLEKENAHLELEVEKILGEL 133 (660)
Q Consensus 71 ~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 133 (660)
-|.++|--++-+ ..+|.+++.+|-.. .-+..-.++-|+.|+.+|+.|..++
T Consensus 5 aL~~EirakQ~~--------~eEL~kvk~~n~~~----e~kLqeaE~rn~eL~~ei~~L~~e~ 55 (61)
T PF08826_consen 5 ALEAEIRAKQAI--------QEELTKVKSANLAF----ESKLQEAEKRNRELEQEIERLKKEM 55 (61)
T ss_dssp HHHHHHHHHHHH--------HHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHH--------HHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 355666666555 67788887776554 3344445777777777777777665
No 479
>cd03568 VHS_STAM VHS domain family, STAM subfamily; members include STAM (Signal Transducing Adaptor Molecule), EAST (EGFR-associated protein with SH3 and TAM domains) and Hbp (Hrs-binding protein). Collectively, they are referred to as STAM. All STAMs have at their N-termini a VHS domain, which is involved in cytokine-mediated intracellular signal transduction and has a superhelical structure similar to the structure of ARM (Armadillo) repeats, followed by a SH3 (Src homology 3) domain, a well-established protein-protein interaction domain. At the C-termini of most vertebrate STAMS, an ITAM (Immunoreceptor Tyrosine-based Activation) motif is present, which mediates the binding of HRS (hepatocyte growth factor-regulated tyrosine kinase substrate) in endocytic and exocytic machineries.
Probab=57.22 E-value=38 Score=32.31 Aligned_cols=71 Identities=18% Similarity=0.237 Sum_probs=58.5
Q ss_pred CHHHHHHhhCCCCHHHHHHHHHHHHHhhC--CchhHHHHHHcCCHHHHHHHHccCCCHHHHHHHHHHHHHhhc
Q 006114 408 GLPKILQLLTSEDPDVQIHAVKVVANLAA--EDINQEKIVEEGGLDALLLLLRTSQNTTILRVASGAIANLAM 478 (660)
Q Consensus 408 gI~~LV~LL~s~d~~vr~~Aa~aL~nLa~--~~en~~~Ive~GgI~~Lv~LL~~s~d~~v~~~Aa~AL~nLA~ 478 (660)
++..|..-|.+.++.++..|+.+|-.|+. .+.....|...+.+..|+.++....++.|+..++..|...+.
T Consensus 38 a~ral~KRl~~~n~~v~l~AL~LLe~~vkNCG~~fh~evask~Fl~eL~kl~~~~~~~~Vk~kil~li~~W~~ 110 (144)
T cd03568 38 CLKAIMKRLNHKDPNVQLRALTLLDACAENCGKRFHQEVASRDFTQELKKLINDRVHPTVKEKLREVVKQWAD 110 (144)
T ss_pred HHHHHHHHHcCCCHHHHHHHHHHHHHHHHHCCHHHHHHHhhHHHHHHHHHHhcccCCHHHHHHHHHHHHHHHH
Confidence 45666677788999999999999999998 355677888888899999999855788999988888887653
No 480
>PF08647 BRE1: BRE1 E3 ubiquitin ligase; InterPro: IPR013956 BRE1 is an E3 ubiquitin ligase that has been shown to act as a transcriptional activator through direct activator interactions [].
Probab=57.00 E-value=1.4e+02 Score=26.39 Aligned_cols=27 Identities=26% Similarity=0.450 Sum_probs=18.0
Q ss_pred hhhHHHHHHhhHHHHHHHHHHHHhhhh
Q 006114 223 ENSTYQKALADTTQLYEKKIAELNKKL 249 (660)
Q Consensus 223 ~~~~~~~~l~~~~~~~~~~~~~~~~~~ 249 (660)
.|+.....|.|+-..|-.+|.++.|++
T Consensus 70 Ks~~~i~~L~~~E~~~~~~l~~~Eke~ 96 (96)
T PF08647_consen 70 KSSELIEQLKETEKEFVRKLKNLEKEL 96 (96)
T ss_pred HhHHHHHHHHHHHHHHHHHHHHhhccC
Confidence 344555667777777777787777763
No 481
>PF14225 MOR2-PAG1_C: Cell morphogenesis C-terminal
Probab=56.70 E-value=2.6e+02 Score=29.43 Aligned_cols=150 Identities=15% Similarity=0.051 Sum_probs=88.1
Q ss_pred HHHHHHHHHHHhhcCchh--------HHHHHhcCccHHHHHhhcCCCC----HHHHHHHHHHHHHHhcChhHHHHHHhcc
Q 006114 465 ILRVASGAIANLAMNEMN--------QGLIMSRGGGQLLAKTASKTDD----PQTLRMVAGALANLCGNEKLHTMLEEDG 532 (660)
Q Consensus 465 v~~~Aa~AL~nLA~~~~n--------~~~Ive~g~I~~Ll~LL~~s~d----~~v~~~Aa~aLanLa~~~~~r~~iv~~G 532 (660)
....+...|..|+..++. +-.+.-.+.+|.++.-+.. ++ ......+|..|+.+|... +.+
T Consensus 78 t~e~tl~lL~~L~~~~~~~lig~~~~rll~~~la~LP~ll~~~d~-~~~i~~~~~~~~~A~~La~~a~~~-------~~~ 149 (262)
T PF14225_consen 78 TYELTLRLLSRLTPLPDDPLIGDSQSRLLFLLLALLPRLLHAFDD-PNPIQPDQECIEIAEALAQVAEAQ-------GLP 149 (262)
T ss_pred cHHHHHHHHHHHhcCCCccccCCCCccHHHHHHHHHHHHHHHhcc-cccccccHHHHHHHHHHHHHHHhC-------CCc
Confidence 345566777777655332 2222223445555555543 33 134556677888877321 112
Q ss_pred HHHHHHH-HhcC---CCHHHHHHHHHHHHHhhccchhhhhhcchhhhHHHhhcChHHHHHHhhcCCCHHHHHHHHHHHHH
Q 006114 533 AIKALLA-MVRS---GNIDVIAQVARGLANFAKCESRAIVQGQRKGRSHLMEDSALEWLIANSKTNSASTRRHVELALCH 608 (660)
Q Consensus 533 ~V~~Lv~-lL~s---~~~~v~~~Al~aLanLA~~~~~~~aq~~~e~r~~Li~~G~v~~Lv~lL~s~d~~vr~~Aa~AL~n 608 (660)
.+..++. +.+. +..+....++..|..-...+ .+...+..|+.++.++.+.++..+...|+.
T Consensus 150 ~La~il~~ya~~~fr~~~dfl~~v~~~l~~~f~P~---------------~~~~~l~~Ll~lL~n~~~w~~~~~L~iL~~ 214 (262)
T PF14225_consen 150 NLARILSSYAKGRFRDKDDFLSQVVSYLREAFFPD---------------HEFQILTFLLGLLENGPPWLRRKTLQILKV 214 (262)
T ss_pred cHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHhCch---------------hHHHHHHHHHHHHhCCcHHHHHHHHHHHHH
Confidence 3333333 3332 33455666666665432211 123467778899998999999999999999
Q ss_pred hhcCCccHHHHHhcCcHHHHHHHHhcCChH
Q 006114 609 LAQNEDNARDFISRGGAKELVQISIESSRE 638 (660)
Q Consensus 609 La~~~e~~~~Ive~G~l~~Lv~lL~s~s~~ 638 (660)
+-.+.+.... .-.+.+.+|+++++.+-..
T Consensus 215 ll~~~d~~~~-~~~dlispllrlL~t~~~~ 243 (262)
T PF14225_consen 215 LLPHVDMRSP-HGADLISPLLRLLQTDLWM 243 (262)
T ss_pred HhccccCCCC-cchHHHHHHHHHhCCccHH
Confidence 9776644444 4455899999999876443
No 482
>PRK10698 phage shock protein PspA; Provisional
Probab=56.66 E-value=1.7e+02 Score=29.96 Aligned_cols=101 Identities=15% Similarity=0.144 Sum_probs=0.0
Q ss_pred HHHHHhhHHHHHHHHHHHHHHHHHHhhhhchHHHHHHHHHHHhhhhhhHHHHhhhhhHHHHHHhhH----HHHHHHHHHH
Q 006114 169 KVLADTTQMYEKKITELIKQLEIEHARSEGAEEQVDTMKKLISDNQKSIEQYEMENSTYQKALADT----TQLYEKKIAE 244 (660)
Q Consensus 169 ~~~~~~~~~~~~~~~~l~~~l~~e~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~l~~~----~~~~~~~~~~ 244 (660)
+.+..-++..+..+.+++..+-.-.+....++-++..++....+|.. +-+..=..-.+.||.. -+.|+.+++.
T Consensus 27 k~l~q~i~em~~~l~~~r~alA~~~A~~k~~er~~~~~~~~~~~~e~---kA~~Al~~G~EdLAr~AL~~K~~~~~~~~~ 103 (222)
T PRK10698 27 KLVRLMIQEMEDTLVEVRSTSARALAEKKQLTRRIEQAEAQQVEWQE---KAELALRKEKEDLARAALIEKQKLTDLIAT 103 (222)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHCCCHHHHHHHHHHHHHHHHHHHH
Q ss_pred HhhhhhhhhhhhhhhHHhHHHHHHHhhh
Q 006114 245 LNKKLEDEHACFEGAVEQLDMVKKLLSD 272 (660)
Q Consensus 245 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 272 (660)
|..+++...+-.+.+..++..++.-|.+
T Consensus 104 l~~~~~~~~~~~~~L~~~l~~L~~ki~e 131 (222)
T PRK10698 104 LEHEVTLVDETLARMKKEIGELENKLSE 131 (222)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
No 483
>PF14500 MMS19_N: Dos2-interacting transcription regulator of RNA-Pol-II
Probab=56.04 E-value=2.7e+02 Score=29.30 Aligned_cols=190 Identities=14% Similarity=0.099 Sum_probs=97.4
Q ss_pred HhhCCCCHHHHHHHHHHHHHhhC-CchhHHHHHHcCCHHHHHHHHccC-CCHHHHHHHHHHHHHhhcCchhHHHHHhcCc
Q 006114 414 QLLTSEDPDVQIHAVKVVANLAA-EDINQEKIVEEGGLDALLLLLRTS-QNTTILRVASGAIANLAMNEMNQGLIMSRGG 491 (660)
Q Consensus 414 ~LL~s~d~~vr~~Aa~aL~nLa~-~~en~~~Ive~GgI~~Lv~LL~~s-~d~~v~~~Aa~AL~nLA~~~~n~~~Ive~g~ 491 (660)
..|.+++..+|..|...|+.+.. -+... ....-|..|+..+.+. .|......++.++..|........ +.
T Consensus 6 ~~Ltsed~~~R~ka~~~Ls~vL~~lp~~~---L~~~ev~~L~~F~~~rl~D~~~~~~~l~gl~~L~~~~~~~~-----~~ 77 (262)
T PF14500_consen 6 EYLTSEDPIIRAKALELLSEVLERLPPDF---LSRQEVQVLLDFFCSRLDDHACVQPALKGLLALVKMKNFSP-----ES 77 (262)
T ss_pred hhhCCCCHHHHHHHHHHHHHHHHhCCHhh---ccHHHHHHHHHHHHHHhccHhhHHHHHHHHHHHHhCcCCCh-----hh
Confidence 45778999999999999988655 33221 1111245555554321 244444445566655553322111 11
Q ss_pred cHHHHH-hhcC----CCCHHHHHHHHHHHHHHhcChhHHHHHHhccHHHHHHHHhc-CCCHHHHHHHHHHHHHhhccch-
Q 006114 492 GQLLAK-TASK----TDDPQTLRMVAGALANLCGNEKLHTMLEEDGAIKALLAMVR-SGNIDVIAQVARGLANFAKCES- 564 (660)
Q Consensus 492 I~~Ll~-LL~~----s~d~~v~~~Aa~aLanLa~~~~~r~~iv~~G~V~~Lv~lL~-s~~~~v~~~Al~aLanLA~~~~- 564 (660)
+..++. +..+ .-....|..+...|..+..+....-.-...+.+..++..+. ..||.....+...+..+...-+
T Consensus 78 ~~~i~~~l~~~~~~q~~~q~~R~~~~~ll~~l~~~~~~~l~~~~~~fv~~~i~~~~gEkDPRnLl~~F~l~~~i~~~~~~ 157 (262)
T PF14500_consen 78 AVKILRSLFQNVDVQSLPQSTRYAVYQLLDSLLENHREALQSMGDDFVYGFIQLIDGEKDPRNLLLSFKLLKVILQEFDI 157 (262)
T ss_pred HHHHHHHHHHhCChhhhhHHHHHHHHHHHHHHHHHhHHHHHhchhHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHhccc
Confidence 222222 2211 11223455555666666533211111122356666777776 4577766665555554432110
Q ss_pred -h---hh----------------------hh--cchhhhHHHhh-----cChHHHHHHhhcCCCHHHHHHHHHHHHHhhc
Q 006114 565 -R---AI----------------------VQ--GQRKGRSHLME-----DSALEWLIANSKTNSASTRRHVELALCHLAQ 611 (660)
Q Consensus 565 -~---~~----------------------aq--~~~e~r~~Li~-----~G~v~~Lv~lL~s~d~~vr~~Aa~AL~nLa~ 611 (660)
+ .+ +. -....|..+.. .-++|.|+..|.++++.++.-+..+|..|+.
T Consensus 158 ~~~~e~lFd~~~cYFPI~F~pp~~dp~~IT~edLk~~L~~cl~s~~~fa~~~~p~LleKL~s~~~~~K~D~L~tL~~c~~ 237 (262)
T PF14500_consen 158 SEFAEDLFDVFSCYFPITFRPPPNDPYGITREDLKRALRNCLSSTPLFAPFAFPLLLEKLDSTSPSVKLDSLQTLKACIE 237 (262)
T ss_pred chhHHHHHHHhhheeeeeeeCCCCCCCCCCHHHHHHHHHHHhcCcHhhHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHH
Confidence 0 00 00 00112333333 3577888888888888899889999888765
No 484
>COG5656 SXM1 Importin, protein involved in nuclear import [Posttranslational modification, protein turnover, chaperones]
Probab=56.00 E-value=75 Score=38.04 Aligned_cols=159 Identities=14% Similarity=0.054 Sum_probs=0.0
Q ss_pred CccHHHHHhh----cCCCCHHHHHHHHHHHHHHh------cChhHHHHHHhccHHHHHHHHhcCCCHHHHHHHHHHHHHh
Q 006114 490 GGGQLLAKTA----SKTDDPQTLRMVAGALANLC------GNEKLHTMLEEDGAIKALLAMVRSGNIDVIAQVARGLANF 559 (660)
Q Consensus 490 g~I~~Ll~LL----~~s~d~~v~~~Aa~aLanLa------~~~~~r~~iv~~G~V~~Lv~lL~s~~~~v~~~Al~aLanL 559 (660)
|+++.++..| ..+++.+-.+.+-|||+-++ .-+....-+.+.=.++.++..+++...-.+..||..+..+
T Consensus 408 giLsf~~sil~qsaa~psn~dnarq~egalr~lasi~s~itk~sp~an~me~fiv~hv~P~f~s~ygfL~Srace~is~~ 487 (970)
T COG5656 408 GILSFLLSILGQSAATPSNIDNARQAEGALRLLASIKSFITKMSPAANVMEYFIVNHVIPAFRSNYGFLKSRACEFISTI 487 (970)
T ss_pred hHHHHHHHHHhcccCCCCccccHHHHhhHHHHHHHHHHHhccCchHHHHHHHHHHHHhhHhhcCcccchHHHHHHHHHHH
Q ss_pred hccchhhhhhcchhhhHHHhhcChHHHHHHhhcCCCHHHHHHHHHHHHHhhcCCccHHHHHhcCcHHHHHHHHhcCChHH
Q 006114 560 AKCESRAIVQGQRKGRSHLMEDSALEWLIANSKTNSASTRRHVELALCHLAQNEDNARDFISRGGAKELVQISIESSRED 639 (660)
Q Consensus 560 A~~~~~~~aq~~~e~r~~Li~~G~v~~Lv~lL~s~d~~vr~~Aa~AL~nLa~~~e~~~~Ive~G~l~~Lv~lL~s~s~~~ 639 (660)
. .+-...-+-..+......++++.+-.|+..|+.||.-+-.+......+..+ +.+.+..++.-++.-+
T Consensus 488 e-----------eDfkd~~ill~aye~t~ncl~nn~lpv~ieAalAlq~fi~~~q~h~k~sah-Vp~tmekLLsLSn~fe 555 (970)
T COG5656 488 E-----------EDFKDNGILLEAYENTHNCLKNNHLPVMIEAALALQFFIFNEQSHEKFSAH-VPETMEKLLSLSNTFE 555 (970)
T ss_pred H-----------HhcccchHHHHHHHHHHHHHhcCCcchhhhHHHHHHHHHhchhhhHHHHhh-hhHHHHHHHHhccccc
Q ss_pred HHHHHHHHHhcCcchhhhhhC
Q 006114 640 IRNLAKKTMKSNPRLQADTHA 660 (660)
Q Consensus 640 ir~~A~~~L~~~p~~~~e~~~ 660 (660)
+-..+..+-.-...|-+|+..
T Consensus 556 iD~LS~vMe~fVe~fseELsp 576 (970)
T COG5656 556 IDPLSMVMESFVEYFSEELSP 576 (970)
T ss_pred chHHHHHHHHHHHHhHHhhch
No 485
>PF10267 Tmemb_cc2: Predicted transmembrane and coiled-coil 2 protein; InterPro: IPR019394 This family of transmembrane coiled-coil containing proteins is conserved from worms to humans. Its function is unknown.
Probab=55.52 E-value=2e+02 Score=32.22 Aligned_cols=73 Identities=16% Similarity=0.216 Sum_probs=46.8
Q ss_pred HHHHHHHHHHHHHHHHhhhhchHHHHHHHHHHHhhhhhhHHHHhhhhhHHHHHHhhHHH----HHHHHHHHHhhhhhhhh
Q 006114 178 YEKKITELIKQLEIEHARSEGAEEQVDTMKKLISDNQKSIEQYEMENSTYQKALADTTQ----LYEKKIAELNKKLEDEH 253 (660)
Q Consensus 178 ~~~~~~~l~~~l~~e~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~l~~~~~----~~~~~~~~~~~~~~~~~ 253 (660)
+-.++..+..-|+.|+-++..||+++|.+-. -|+-|=+.+...||+|-. .+.-++.++..-+|-=+
T Consensus 242 ~~~e~~~~~~~LqEEr~R~erLEeqlNd~~e----------lHq~Ei~~LKqeLa~~EEK~~Yqs~eRaRdi~E~~Es~q 311 (395)
T PF10267_consen 242 YQREYQFILEALQEERYRYERLEEQLNDLTE----------LHQNEIYNLKQELASMEEKMAYQSYERARDIWEVMESCQ 311 (395)
T ss_pred HHHHHHHHHHHHHHhHHHHHHHHHHHHHHHH----------HHHHHHHHHHHHHHhHHHHHHHHHHHHHhHHHHHHHHHH
Confidence 5557788888999999999999999885432 233444556667776653 23334566666666555
Q ss_pred hhhhhhH
Q 006114 254 ACFEGAV 260 (660)
Q Consensus 254 ~~~~~~~ 260 (660)
.|...+|
T Consensus 312 tRisklE 318 (395)
T PF10267_consen 312 TRISKLE 318 (395)
T ss_pred HHHHHHH
Confidence 5544443
No 486
>PF08826 DMPK_coil: DMPK coiled coil domain like; InterPro: IPR014930 This domain is found in the myotonic dystrophy protein kinase (DMPK) and adopts a coiled coil structure. It plays a role in dimerisation []. ; GO: 0004674 protein serine/threonine kinase activity, 0005524 ATP binding, 0006468 protein phosphorylation; PDB: 1WT6_D.
Probab=55.43 E-value=1.2e+02 Score=24.93 Aligned_cols=30 Identities=20% Similarity=0.181 Sum_probs=24.7
Q ss_pred HHHHHHHHHHHHHHhHHHHHHHHHHHHHHH
Q 006114 285 ELCVKLKETRQLHESAVYEVQTLKSEYKNL 314 (660)
Q Consensus 285 ~Lk~~Le~e~~~~e~~e~E~~~lks~l~~l 314 (660)
+|.-.|+-+.+-+....+|++..|+....+
T Consensus 1 elQsaL~~EirakQ~~~eEL~kvk~~n~~~ 30 (61)
T PF08826_consen 1 ELQSALEAEIRAKQAIQEELTKVKSANLAF 30 (61)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CHHhHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 467789999999999999999888866543
No 487
>PRK11281 hypothetical protein; Provisional
Probab=55.23 E-value=5.6e+02 Score=32.77 Aligned_cols=13 Identities=8% Similarity=0.238 Sum_probs=6.0
Q ss_pred HHHHHHHHHHHHH
Q 006114 179 EKKITELIKQLEI 191 (660)
Q Consensus 179 ~~~~~~l~~~l~~ 191 (660)
-..+.++.++|..
T Consensus 169 ~~RlqeI~~~L~~ 181 (1113)
T PRK11281 169 SQRLQQIRNLLKG 181 (1113)
T ss_pred HHHHHHHHHHHhC
Confidence 3344455555533
No 488
>KOG1832 consensus HIV-1 Vpr-binding protein [Cell cycle control, cell division, chromosome partitioning]
Probab=55.05 E-value=52 Score=39.98 Aligned_cols=160 Identities=14% Similarity=0.123 Sum_probs=85.8
Q ss_pred HHHHHHHHhhcCchhHHHHHhcCccHHHHHhhcC---CCCHHHHHHHHHHHHHHhcChhHHHHHHhccHHHHHHHHhcCC
Q 006114 468 VASGAIANLAMNEMNQGLIMSRGGGQLLAKTASK---TDDPQTLRMVAGALANLCGNEKLHTMLEEDGAIKALLAMVRSG 544 (660)
Q Consensus 468 ~Aa~AL~nLA~~~~n~~~Ive~g~I~~Ll~LL~~---s~d~~v~~~Aa~aLanLa~~~~~r~~iv~~G~V~~Lv~lL~s~ 544 (660)
.+..+|.-|-...+.-..+.+. |+..++.++.+ ..|..+.-.+...|+.|+...+....++..|||..|+.+=+.+
T Consensus 328 ~~~q~l~~lgey~e~lpv~~~~-g~~~~~~~~~~~~q~~d~~l~~~~~k~~~~l~~h~kfa~~fv~~~gi~kll~vpr~s 406 (1516)
T KOG1832|consen 328 YCIQCLEILGEYVEVLPVLHEK-GVDVCIVLLERTSQLDDSPLLPDVMKLICALAAHRKFAAMFVERRGILKLLAVPRVS 406 (1516)
T ss_pred HHHHHHHHHHhHHHHHHHHHHh-CchhhhhhhhhhhccccccccHHHHHHHHHHHHhhHHHHHHHHhhhhHHHhcCCCch
Confidence 3445555554444434334444 44554444432 2444566677788999998889999999999999887775533
Q ss_pred C-HHHHHHHHHHHHHhhccchhhhhhcchhhhHHHhhcChHHHHHHhhcCCCHHHHHHHHHHHHHhhcCCccHHHHHhcC
Q 006114 545 N-IDVIAQVARGLANFAKCESRAIVQGQRKGRSHLMEDSALEWLIANSKTNSASTRRHVELALCHLAQNEDNARDFISRG 623 (660)
Q Consensus 545 ~-~~v~~~Al~aLanLA~~~~~~~aq~~~e~r~~Li~~G~v~~Lv~lL~s~d~~vr~~Aa~AL~nLa~~~e~~~~Ive~G 623 (660)
. ..-...|+..|+.+-.--.++.+ .-..+-+.+|..-+.++.-..++-+.+++..+..+-..-.....+-...
T Consensus 407 ~~~~g~s~cly~~~~~q~~mervc~------~p~~v~~~vv~~~~~l~~cs~~~~~~~~~~ff~~~f~frail~~fd~~d 480 (1516)
T KOG1832|consen 407 ETFYGLSSCLYTIGSLQGIMERVCA------LPLVVIHQVVKLAIELLDCSQDQARKNSALFFAAAFVFRAILDAFDAQD 480 (1516)
T ss_pred hhhhhHHHHHHHHhhhhhHHHHHhh------ccHHHHHHHHHHHHHHHhcchhhccchHHHHHHHHHHHHHHHHHHhhhh
Confidence 2 22334455555443211011110 0112223444444555555555666665554443322223334444567
Q ss_pred cHHHHHHHHhc
Q 006114 624 GAKELVQISIE 634 (660)
Q Consensus 624 ~l~~Lv~lL~s 634 (660)
++..|+.++..
T Consensus 481 ~l~~l~~~~~~ 491 (1516)
T KOG1832|consen 481 SLQKLLAILKD 491 (1516)
T ss_pred HHHHHHHHHHH
Confidence 77777777753
No 489
>PF09731 Mitofilin: Mitochondrial inner membrane protein; InterPro: IPR019133 Mitofilin controls mitochondrial cristae morphology. Mitofilin is enriched in the narrow space between the inner boundary and the outer membranes, where it forms a homotypic interaction and assembles into a large multimeric protein complex []. The first 78 amino acids contain a typical amino-terminal-cleavable mitochondrial presequence (residues 1-43) rich in positive-charged and hydroxylated residues and a membrane anchor domain (residues 47-66). In addition, it has three centrally located coiled coil domains (residues 200-240,280-310 and 400-420) []. ; GO: 0031305 integral to mitochondrial inner membrane
Probab=55.05 E-value=4e+02 Score=31.07 Aligned_cols=86 Identities=30% Similarity=0.460 Sum_probs=51.1
Q ss_pred hcchHHHHHHHHHHHHHhhHHHHHHhhhhhhhHHHHHHHHHHHHhh-HHHHHhhHHHHHHHHHHHHHHHHHhhhhchHHH
Q 006114 12 EFDYESLCRKLETQVDHLTAEIERKQKLRENDKCELEKLLRECQIS-YDEAKDNLVTQVELLTAKIEMQQKLRENDKYEF 90 (660)
Q Consensus 12 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 90 (660)
+-+|.++....-..+++|..++.. ++..+...+++.+..-... +..+..++..++++-.. ++...-+.+|
T Consensus 246 ~~~~~~~i~~a~~~i~~L~~~l~~---l~~~~~~~l~~~L~~q~~e~~~~~~~~~~~~le~~~~------~~~~~~~~e~ 316 (582)
T PF09731_consen 246 ESDLNSLIAHAKERIDALQKELAE---LKEEEEEELERALEEQREELLSKLREELEQELEEKRA------ELEEELREEF 316 (582)
T ss_pred ccccHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH------HHHHHHHHHH
Confidence 457888888888888888865554 3344444444444443333 33344433333332111 3444457788
Q ss_pred HHHHHHHHhhHHHHHH
Q 006114 91 EKQLRESQISYDESMR 106 (660)
Q Consensus 91 e~~~~~~~~~~~~~~~ 106 (660)
+.+..+.+..|.+.++
T Consensus 317 ~~~~~~l~~~~~~~L~ 332 (582)
T PF09731_consen 317 EREREELEEKYEEELR 332 (582)
T ss_pred HHHHHHHHHHHHHHHH
Confidence 8888888888887754
No 490
>KOG0994 consensus Extracellular matrix glycoprotein Laminin subunit beta [Extracellular structures]
Probab=55.00 E-value=5.6e+02 Score=32.70 Aligned_cols=82 Identities=16% Similarity=0.174 Sum_probs=46.4
Q ss_pred hhhhhHHhHHHHHHHhhhhhccccchhHH-HHHHHHHHHHHHHHHhHHHHHHHHHHHHH---HHHHhhhhccHHHHHHHH
Q 006114 255 CFEGAVEQLDMVKKLLSDYQNSNQGQKEV-HELCVKLKETRQLHESAVYEVQTLKSEYK---NLLEEKETMSDELQAARQ 330 (660)
Q Consensus 255 ~~~~~~~~~~~~~~~~~~~~~~~~~~~e~-~~Lk~~Le~e~~~~e~~e~E~~~lks~l~---~l~~~~~~~~eel~~~~k 330 (660)
-..+|..|+.++-..++.-+.-.-+...- ....+...-....-.++++.+..|++.+. +|...+..+.....+--+
T Consensus 1613 ~~~~a~q~~~eL~~~~e~lk~~~~qns~~A~~a~~~a~sa~~~A~~a~q~~~~lq~~~~~~~~l~~~r~~g~~~ar~rAe 1692 (1758)
T KOG0994|consen 1613 LATSATQQLGELETRMEELKHKAAQNSAEAKQAEKTAGSAKEQALSAEQGLEILQKYYELVDRLLEKRMEGSQAARERAE 1692 (1758)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcchhHHHHHH
Confidence 34456666777666666665554444443 44555555556666788888888888665 444444444433333334
Q ss_pred HHHHHH
Q 006114 331 RLLVEE 336 (660)
Q Consensus 331 ~l~~e~ 336 (660)
+|.++.
T Consensus 1693 ~L~~eA 1698 (1758)
T KOG0994|consen 1693 QLRTEA 1698 (1758)
T ss_pred HHHHHH
Confidence 444443
No 491
>PF06637 PV-1: PV-1 protein (PLVAP); InterPro: IPR009538 This family consists of several PV-1 (PLVAP) proteins, which seem to be specific to mammals. PV-1 is a novel protein component of the endothelial fenestral and stomatal diaphragms []. The function of this family is unknown.
Probab=54.95 E-value=1.9e+02 Score=32.09 Aligned_cols=95 Identities=28% Similarity=0.294 Sum_probs=51.4
Q ss_pred HHHHHHHHHHHHHhhHHHHHHhhhhhhhHHHHHHHHHHHHhhHHHHHhhHHHHHHHHHHHHHHHHHhhhhchHHHHHHHH
Q 006114 16 ESLCRKLETQVDHLTAEIERKQKLRENDKCELEKLLRECQISYDEAKDNLVTQVELLTAKIEMQQKLRENDKYEFEKQLR 95 (660)
Q Consensus 16 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~ 95 (660)
+.|.|+|-.-++....|+.+=+ -.|.+.|..++-|+-.-+-+.++-...--+|.++--||..|
T Consensus 284 eelar~Lr~~I~~VarENs~Lq----rQKle~e~~l~a~qeakek~~KEAqareaklqaec~rQ~ql------------- 346 (442)
T PF06637_consen 284 EELARSLRAGIERVARENSDLQ----RQKLEAEQGLQASQEAKEKAGKEAQAREAKLQAECARQTQL------------- 346 (442)
T ss_pred HHHHHHHhhhHHHHHHhhhHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------------
Confidence 4566666666666654443321 12334455555444444434343333333455555555555
Q ss_pred HHHhhHHHHHHhhhhhhhHHHHhhhhHHHHHHHHHhhhhhhhhh
Q 006114 96 ESQISYDESMRNLVTRSEFLEKENAHLELEVEKILGELNHQKDQ 139 (660)
Q Consensus 96 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 139 (660)
-|+++ --|.+|...|..|+.+-..++++.+.+
T Consensus 347 -----------aLEEK-aaLrkerd~L~keLeekkreleql~~q 378 (442)
T PF06637_consen 347 -----------ALEEK-AALRKERDSLAKELEEKKRELEQLKMQ 378 (442)
T ss_pred -----------HHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444 456777778888888777777766653
No 492
>KOG1820 consensus Microtubule-associated protein [Cytoskeleton]
Probab=54.89 E-value=1.2e+02 Score=36.96 Aligned_cols=137 Identities=12% Similarity=0.057 Sum_probs=83.9
Q ss_pred CCCHHHHHHHHHHHHHhhC-CchhHHHHHHcCCHHHHHHHHccCCCHHHHHHHHHHHHHhhcCchhHHHHHhcCccHHHH
Q 006114 418 SEDPDVQIHAVKVVANLAA-EDINQEKIVEEGGLDALLLLLRTSQNTTILRVASGAIANLAMNEMNQGLIMSRGGGQLLA 496 (660)
Q Consensus 418 s~d~~vr~~Aa~aL~nLa~-~~en~~~Ive~GgI~~Lv~LL~~s~d~~v~~~Aa~AL~nLA~~~~n~~~Ive~g~I~~Ll 496 (660)
..+..+...|+..|..|+. -....... ..+..|.|+..+. ..-+.++..+..++-.++.. ..-...++.++
T Consensus 306 DaN~~v~~~aa~~l~~ia~~lr~~~~~~-~~~v~p~lld~lk-ekk~~l~d~l~~~~d~~~ns------~~l~~~~~~I~ 377 (815)
T KOG1820|consen 306 DANINVVMLAAQILELIAKKLRPLFRKY-AKNVFPSLLDRLK-EKKSELRDALLKALDAILNS------TPLSKMSEAIL 377 (815)
T ss_pred CcchhHHHHHHHHHHHHHHhcchhhHHH-HHhhcchHHHHhh-hccHHHHHHHHHHHHHHHhc------ccHHHHHHHHH
Confidence 4567777888888888887 33332222 2235788888886 44555555555554444321 11122456677
Q ss_pred HhhcCCCCHHHHHHHHHHHHHHh-cCh-hHHHHHHhccHHHHHHHHhcCCCHHHHHHHHHHHHHhhccc
Q 006114 497 KTASKTDDPQTLRMVAGALANLC-GNE-KLHTMLEEDGAIKALLAMVRSGNIDVIAQVARGLANFAKCE 563 (660)
Q Consensus 497 ~LL~~s~d~~v~~~Aa~aLanLa-~~~-~~r~~iv~~G~V~~Lv~lL~s~~~~v~~~Al~aLanLA~~~ 563 (660)
..+++ .+|.+...+...+.... ..+ .....-.-.+++|.++......+.+|+..|..+++.+-.+.
T Consensus 378 e~lk~-knp~~k~~~~~~l~r~~~~~~~~~~~~~t~~~l~p~~~~~~~D~~~~VR~Aa~e~~~~v~k~~ 445 (815)
T KOG1820|consen 378 EALKG-KNPQIKGECLLLLDRKLRKLGPKTVEKETVKTLVPHLIKHINDTDKDVRKAALEAVAAVMKVH 445 (815)
T ss_pred HHhcC-CChhhHHHHHHHHHHHHhhcCCcCcchhhHHHHhHHHhhhccCCcHHHHHHHHHHHHHHHHHh
Confidence 77764 78888876554443332 222 22222222467888888888999999999999998776543
No 493
>KOG1788 consensus Uncharacterized conserved protein [Function unknown]
Probab=54.89 E-value=2.1e+02 Score=35.99 Aligned_cols=229 Identities=19% Similarity=0.172 Sum_probs=123.0
Q ss_pred chhHHHHHhCCCHHHHHHhhCCCCHHHHHHHHHHHHHhhCCchhHHHHHHcCCHHHHHHHHccCC-------C----HHH
Q 006114 397 RATIAKICDEVGLPKILQLLTSEDPDVQIHAVKVVANLAAEDINQEKIVEEGGLDALLLLLRTSQ-------N----TTI 465 (660)
Q Consensus 397 ~~~~~~I~e~ggI~~LV~LL~s~d~~vr~~Aa~aL~nLa~~~en~~~Ive~GgI~~Lv~LL~~s~-------d----~~v 465 (660)
..+...+.+..|+..++.++ -+.+-|...+.++.-|...+..+ +...-+-.|+..|+++. + ..+
T Consensus 674 teNqklFreanGvklilpfl--indehRSslLrivscLitvdpkq---vhhqelmalVdtLksgmvt~Isgeqyklhfsl 748 (2799)
T KOG1788|consen 674 TENQKLFREANGVKLILPFL--INDEHRSSLLRIVSCLITVDPKQ---VHHQELMALVDTLKSGMVTRISGEQYKLHFSL 748 (2799)
T ss_pred chhhHHHHhhcCceEEEEee--echHHHHHHHHHHHHHhccCccc---ccHHHHHHHHHHHHhcceeccchhHHHHHHHH
Confidence 33444455677777777666 33444555555555554422111 11112445666665421 1 134
Q ss_pred HHHHHHHHHHhhcC-chhHHHHHhcCccHHHHHhhcC---------CCCHHHHHHHHHHHH-----HHhcChhHHHHHH-
Q 006114 466 LRVASGAIANLAMN-EMNQGLIMSRGGGQLLAKTASK---------TDDPQTLRMVAGALA-----NLCGNEKLHTMLE- 529 (660)
Q Consensus 466 ~~~Aa~AL~nLA~~-~~n~~~Ive~g~I~~Ll~LL~~---------s~d~~v~~~Aa~aLa-----nLa~~~~~r~~iv- 529 (660)
.....+++|.+... -..+..+.+.||+..|+.+|.. .+|.-+...-...|. .+|.++.++..+.
T Consensus 749 lcdlmGalwrivgvngsaqrvFgeatGFslLlttLhtfqgftelhdesDlcvyiklfkilFrlfTlavcenasNrmklht 828 (2799)
T KOG1788|consen 749 LCDLMGALWRIVGVNGSAQRVFGEATGFSLLLTTLHTFQGFTELHDESDLCVYIKLFKILFRLFTLAVCENASNRMKLHT 828 (2799)
T ss_pred HHHHHHHHHHHHccCchheeehhccccHHHHHHHHHHhccchhcCCchhhhhHHHHHHHHHHHHHHHHhhcchhhhheee
Confidence 55667888888654 5667788899999998887742 122222111122222 2235566554432
Q ss_pred ------------hcc---------HHHHHHHH-hc---CCCHHHHHHHHHHHHHhhccchhhhhhcch-----hhhHHHh
Q 006114 530 ------------EDG---------AIKALLAM-VR---SGNIDVIAQVARGLANFAKCESRAIVQGQR-----KGRSHLM 579 (660)
Q Consensus 530 ------------~~G---------~V~~Lv~l-L~---s~~~~v~~~Al~aLanLA~~~~~~~aq~~~-----e~r~~Li 579 (660)
..| .|..|.++ +. ++.-..-..||..+..+-.. .-+-..+ .....|.
T Consensus 829 vITsqtftsLLresgllcvnler~viqlllElalevlvppfLtSEsaAcaeVfeledn---ifavntPsGqfnpdk~~iy 905 (2799)
T KOG1788|consen 829 VITSQTFTSLLRESGLLCVNLERHVIQLLLELALEVLVPPFLTSESAACAEVFELEDN---IFAVNTPSGQFNPDKQKIY 905 (2799)
T ss_pred eeeHHHHHHHHHHhccceecchHHHHHHHHHHHHHhhCCchhhhhHHHHHHHhhcccc---eeeeccCCCCcCchHhhhc
Confidence 223 12222222 11 11111112233333221100 0000011 2345677
Q ss_pred hcChHHHHHHhhcCCCHHHHHHHHHHHHHhhcCC-ccHHHHHhcCcHHHHHHHHh
Q 006114 580 EDSALEWLIANSKTNSASTRRHVELALCHLAQNE-DNARDFISRGGAKELVQISI 633 (660)
Q Consensus 580 ~~G~v~~Lv~lL~s~d~~vr~~Aa~AL~nLa~~~-e~~~~Ive~G~l~~Lv~lL~ 633 (660)
..|++..|++.+-...+..+-.-...+-.++.++ .++.-....|++..|+.++.
T Consensus 906 nagavRvlirslLlnypK~qlefl~lleSlaRaspfnaelltS~gcvellleIiy 960 (2799)
T KOG1788|consen 906 NAGAVRVLIRSLLLNYPKLQLEFLNLLESLARASPFNAELLTSAGCVELLLEIIY 960 (2799)
T ss_pred ccchhHHHHHHHHhhChHHHHHHHHHHHHHhhcCCCchhhhhcccHHHHHHHHhh
Confidence 8999999999988888998888888888888866 56666678899999888874
No 494
>smart00787 Spc7 Spc7 kinetochore protein. This domain is found in cell division proteins which are required for kinetochore-spindle association.
Probab=54.50 E-value=3.1e+02 Score=29.65 Aligned_cols=81 Identities=20% Similarity=0.204 Sum_probs=47.9
Q ss_pred HHHHHHhhhhhhhhhhhhHHHHHHHHHHHhhhhhhhhhhhhhhHHHHHHhhHHHHHHHHHHHHHHHHHHhhhhchHHHHH
Q 006114 125 EVEKILGELNHQKDQNNLKREKIVQLEISLKNSKQQQLDNSSYQKVLADTTQMYEKKITELIKQLEIEHARSEGAEEQVD 204 (660)
Q Consensus 125 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~e~~~~~~~~~~~~ 204 (660)
|+++++..|..+......+..++.+++-+|..+. ...+.....++.+..+|.++.+.++. ++.-...|+.
T Consensus 205 eL~~lk~~l~~~~~ei~~~~~~l~e~~~~l~~l~-------~~I~~~~~~k~e~~~~I~~ae~~~~~---~r~~t~~Ei~ 274 (312)
T smart00787 205 ELDRAKEKLKKLLQEIMIKVKKLEELEEELQELE-------SKIEDLTNKKSELNTEIAEAEKKLEQ---CRGFTFKEIE 274 (312)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHh---cCCCCHHHHH
Confidence 5556666666666555555555555544444332 23344455556666666666655533 4555677888
Q ss_pred HHHHHHhhhhh
Q 006114 205 TMKKLISDNQK 215 (660)
Q Consensus 205 ~l~~~l~~~~~ 215 (660)
.|+..+.-+|+
T Consensus 275 ~Lk~~~~~Le~ 285 (312)
T smart00787 275 KLKEQLKLLQS 285 (312)
T ss_pred HHHHHHHHHHH
Confidence 88888877773
No 495
>KOG4302 consensus Microtubule-associated protein essential for anaphase spindle elongation [Cell cycle control, cell division, chromosome partitioning; Cytoskeleton]
Probab=54.20 E-value=4.5e+02 Score=31.44 Aligned_cols=202 Identities=17% Similarity=0.204 Sum_probs=109.8
Q ss_pred HHHhhHHHHHHhhhhhhhHHHHhhhhHHHHHHHHHhhhhhhhhhhh-------hHHHHHHHHHHHhhhhhhhhhhhhhhH
Q 006114 96 ESQISYDESMRNLVTRSEFLEKENAHLELEVEKILGELNHQKDQNN-------LKREKIVQLEISLKNSKQQQLDNSSYQ 168 (660)
Q Consensus 96 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------~~~~~~~~~~~~~~~~~~~~~~~~~~~ 168 (660)
+|-..|..-+......-..|..+++..+.|+-.|...+...-+-.. .+-+...-| .++.
T Consensus 47 e~~~~y~~kve~a~~~~~~L~~~ia~~eael~~l~s~l~~~~~~~~~~~k~e~tLke~l~~l--------------~~~l 112 (660)
T KOG4302|consen 47 ECLEIYKRKVEEASESKARLLQEIAVIEAELNDLCSALGEPSIIGEISDKIEGTLKEQLESL--------------KPYL 112 (660)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCcccccccccccCccHHHHHHHH--------------HHHH
Confidence 4555555433333333345666677777777777666643332221 222233333 4445
Q ss_pred HHHHHhhHHHHHHHHHHHHHHHHHHhhh---------------hchHHHHHHHHHHHhhhhhhHHHHhhhhhHHHHHHhh
Q 006114 169 KVLADTTQMYEKKITELIKQLEIEHARS---------------EGAEEQVDTMKKLISDNQKSIEQYEMENSTYQKALAD 233 (660)
Q Consensus 169 ~~~~~~~~~~~~~~~~l~~~l~~e~~~~---------------~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~l~~ 233 (660)
..+.+.....-.++.++..+++.=++.- +.--.+++.|...|..+++.... -.++++.
T Consensus 113 e~lr~qk~eR~~ef~el~~qie~l~~~l~g~~~~~~~~~~D~~dlsl~kLeelr~~L~~L~~ek~~------Rlekv~~- 185 (660)
T KOG4302|consen 113 EGLRKQKDERRAEFKELYHQIEKLCEELGGPEDLPSFLIADESDLSLEKLEELREHLNELQKEKSD------RLEKVLE- 185 (660)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCccCCcccccCcccccHHHHHHHHHHHHHHHHHHHH------HHHHHHH-
Confidence 5555555555566666666655433322 22236777777777777753332 2222222
Q ss_pred HHHHHHHHHHHHhhhhhhhhhhhhhhHHhHHHHHHHhhhhhc---cccchhHHHHHHHHHHHHHHHHHhHHHHHHHHHHH
Q 006114 234 TTQLYEKKIAELNKKLEDEHACFEGAVEQLDMVKKLLSDYQN---SNQGQKEVHELCVKLKETRQLHESAVYEVQTLKSE 310 (660)
Q Consensus 234 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~e~~~Lk~~Le~e~~~~e~~e~E~~~lks~ 310 (660)
|...|..|-..|+-.-+-- .+.+-.-|.|+-. -....+-+..|.++++...-++..--+-++.|..+
T Consensus 186 ----~~~~I~~l~~~Lg~~~~~~------vt~~~~sL~~~~~~~~~~is~etl~~L~~~v~~l~~~k~qr~~kl~~l~~~ 255 (660)
T KOG4302|consen 186 ----LKEEIKSLCSVLGLDFSMT------VTDVEPSLVDHDGEQSRSISDETLDRLDKMVKKLKEEKKQRLQKLQDLRTK 255 (660)
T ss_pred ----HHHHHHHHHHHhCCCcccc------hhhhhhhhhhccCcccccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4445555555554322211 1233333444333 56667777888888888888888888888888888
Q ss_pred HHHHHHhhhhccHHHHHH
Q 006114 311 YKNLLEEKETMSDELQAA 328 (660)
Q Consensus 311 l~~l~~~~~~~~eel~~~ 328 (660)
+.+|=--.++-.+|..+.
T Consensus 256 ~~~LWn~l~ts~Ee~~~f 273 (660)
T KOG4302|consen 256 LLELWNLLDTSDEERQRF 273 (660)
T ss_pred HHHHHHhccCCHHHHHHH
Confidence 887754444555554443
No 496
>PRK10884 SH3 domain-containing protein; Provisional
Probab=53.84 E-value=1.1e+02 Score=31.22 Aligned_cols=23 Identities=26% Similarity=0.195 Sum_probs=10.0
Q ss_pred hhhhHHHHhhhhHHHHHHHHHhh
Q 006114 110 TRSEFLEKENAHLELEVEKILGE 132 (660)
Q Consensus 110 ~~~~~~~~~~~~~~~~~~~~~~~ 132 (660)
.+...++++...|..++..+..+
T Consensus 93 ~rlp~le~el~~l~~~l~~~~~~ 115 (206)
T PRK10884 93 TRVPDLENQVKTLTDKLNNIDNT 115 (206)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhH
Confidence 34444444444444444444433
No 497
>PF00769 ERM: Ezrin/radixin/moesin family; InterPro: IPR011259 The ERM family consists of three closely-related proteins, ezrin, radixin and moesin []. Ezrin was first identified as a constituent of microvilli [], radixin as a barbed, end-capping actin-modulating protein from isolated junctional fractions [], and moesin as a heparin binding protein []. A tumour suppressor molecule responsible for neurofibromatosis type 2 (NF2) is highly similar to ERM proteins and has been designated merlin (moesin-ezrin-radixin-like protein). ERM molecules contain 3 domains, an N-terminal globular domain; an extended alpha-helical domain; and a charged C-terminal domain []. Ezrin, radixin and merlin also contain a polyproline region between the helical and C-terminal domains. The N-terminal domain is highly conserved, and is also found in merlin, band 4.1 proteins and members of the band 4.1 superfamily. ERM proteins crosslink actin filaments with plasma membranes. They co-localise with CD44 at actin filament-plasma membrane interaction sites, associating with CD44 via their N-terminal domains and with actin filaments via their C-terminal domains [].; GO: 0008092 cytoskeletal protein binding, 0005737 cytoplasm, 0019898 extrinsic to membrane; PDB: 2I1J_A 2I1K_A 1E5W_A 1EF1_C.
Probab=53.74 E-value=2.8e+02 Score=28.87 Aligned_cols=35 Identities=17% Similarity=0.287 Sum_probs=11.3
Q ss_pred HHHhhhhHHHHHHHHHhhhhhhhhhhhhHHHHHHH
Q 006114 115 LEKENAHLELEVEKILGELNHQKDQNNLKREKIVQ 149 (660)
Q Consensus 115 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 149 (660)
|++.-..++.++.+|..+-..+...+..|..++..
T Consensus 52 Le~k~~eaee~~~rL~~~~~~~~eEk~~Le~e~~e 86 (246)
T PF00769_consen 52 LEQKRQEAEEEKQRLEEEAEMQEEEKEQLEQELRE 86 (246)
T ss_dssp HHHHHHHHHHHHHHHHH------------HHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44444455555555555555555444444444433
No 498
>PF15294 Leu_zip: Leucine zipper
Probab=53.65 E-value=3e+02 Score=29.28 Aligned_cols=198 Identities=25% Similarity=0.272 Sum_probs=0.0
Q ss_pred hhhhhHHHHHHHHHHHHhhHHHHHhhHHHHHHHHHHHHHHHH--HhhhhchHHHHHH-HHHHHhhHHHHHHhhhhhh---
Q 006114 39 LRENDKCELEKLLRECQISYDEAKDNLVTQVELLTAKIEMQQ--KLRENDKYEFEKQ-LRESQISYDESMRNLVTRS--- 112 (660)
Q Consensus 39 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~e~~-~~~~~~~~~~~~~~~~~~~--- 112 (660)
|.-+-+.+.|..+.-..-+-.-+.+.|-.|-++ . ||. .|-.++|++ |-+--..|... .+....
T Consensus 42 L~~~v~~~vesEL~N~~htn~lllrql~~qAek--------~~lkl~-~diselEn~eLLe~i~~~E~~--~~~~~~~~~ 110 (278)
T PF15294_consen 42 LQVVVKSEVESELINTSHTNVLLLRQLFSQAEK--------WYLKLQ-TDISELENRELLEQIAEFEKQ--EFTSSFKPN 110 (278)
T ss_pred HHHHHHHHHHHHHHhHHHhHHHHHHHHHHHHHH--------HHHHhc-ccHHHHHHHHHHHHHHHHHHh--hhcccCCcc
Q ss_pred ------------hH-----HHHhhhhHHHHHHHHHhhhhhhhhhhhhHHHHHHHHHHHhhhhhhhhhhhhhhH--HHHHH
Q 006114 113 ------------EF-----LEKENAHLELEVEKILGELNHQKDQNNLKREKIVQLEISLKNSKQQQLDNSSYQ--KVLAD 173 (660)
Q Consensus 113 ------------~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~ 173 (660)
|- |.+|..+|-.|-+.|+.-+..--...+.+-++...|+-.|+...--+-+.-... .+-+.
T Consensus 111 ~~~~~~KL~pl~e~g~~~ll~kEi~rLq~EN~kLk~rl~~le~~at~~l~Ek~kl~~~L~~lq~~~~~~~~k~~~~~~~q 190 (278)
T PF15294_consen 111 QETSKPKLEPLNESGGSELLNKEIDRLQEENEKLKERLKSLEKQATSALDEKSKLEAQLKELQDEQGDQKGKKDLSFKAQ 190 (278)
T ss_pred ccccccccccccccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcccccccccc
Q ss_pred hhHHHHHHHHHHHHH----HHHHHhhhhchHHHHHHHHHHHhhhhhhHHHHhhhhhHHHHHHhhHHHHHHHH--------
Q 006114 174 TTQMYEKKITELIKQ----LEIEHARSEGAEEQVDTMKKLISDNQKSIEQYEMENSTYQKALADTTQLYEKK-------- 241 (660)
Q Consensus 174 ~~~~~~~~~~~l~~~----l~~e~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~-------- 241 (660)
....+|.+|+-++.+ +.+.....+++++.|..-+..+-..|. +....-....+.+..|++----|
T Consensus 191 ~l~dLE~k~a~lK~e~ek~~~d~~~~~k~L~e~L~~~KhelL~~Qe---qL~~aekeLekKfqqT~ay~NMk~~ltkKn~ 267 (278)
T PF15294_consen 191 DLSDLENKMAALKSELEKALQDKESQQKALEETLQSCKHELLRVQE---QLSLAEKELEKKFQQTAAYRNMKEILTKKNE 267 (278)
T ss_pred chhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcch---hhhcchhhHHHHhCccHHHHHhHHHHHhccH
Q ss_pred -HHHHhhhhh
Q 006114 242 -IAELNKKLE 250 (660)
Q Consensus 242 -~~~~~~~~~ 250 (660)
|++|.++|+
T Consensus 268 QiKeLRkrl~ 277 (278)
T PF15294_consen 268 QIKELRKRLA 277 (278)
T ss_pred HHHHHHHHhc
No 499
>KOG4593 consensus Mitotic checkpoint protein MAD1 [Cell cycle control, cell division, chromosome partitioning]
Probab=53.54 E-value=4.6e+02 Score=31.36 Aligned_cols=255 Identities=16% Similarity=0.173 Sum_probs=0.0
Q ss_pred hHHHHHHHHHHHHHhhHHHHHHhhhhhhhHHHHHHHHHHHHhhHHHHHhhHHHHHHHHHHHHHHHHHhhhhchHHHHHHH
Q 006114 15 YESLCRKLETQVDHLTAEIERKQKLRENDKCELEKLLRECQISYDEAKDNLVTQVELLTAKIEMQQKLRENDKYEFEKQL 94 (660)
Q Consensus 15 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~ 94 (660)
|.|+---++-.++.|-.+..|. +.+++|.-.+.+..| .|+++|+.++ ...-+.+...+
T Consensus 60 ~~s~~~~~~~~l~~Lqns~kr~-------el~~~k~~~i~~r~~--------------~~~~dr~~~~-~~~l~~~q~a~ 117 (716)
T KOG4593|consen 60 SKSLLMQLEDELMQLQNSHKRA-------ELELTKAQSILARNY--------------EAEVDRKHKL-LTRLRQLQEAL 117 (716)
T ss_pred hHHHHHHHHHHHHHHhhHHHHH-------HHHHHHHHHHHHHHH--------------HHHHHHHHHH-HHHHHHHHHHH
Q ss_pred HHHHhhHHHHHHhhhhhhhHHHHhhhhHHHHHHHHHhhhhhhhhhhhhHHHHHHHHHHHhhhhhhhhhhhhhhHHHHHHh
Q 006114 95 RESQISYDESMRNLVTRSEFLEKENAHLELEVEKILGELNHQKDQNNLKREKIVQLEISLKNSKQQQLDNSSYQKVLADT 174 (660)
Q Consensus 95 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 174 (660)
+.-...|.+. ++..........-.-.--.+.+.+++.++..-.+...+.-++-.-.-....+.
T Consensus 118 ~~~e~~lq~q-----------------~e~~~n~~q~~~~k~~el~~e~~~k~ae~~~lr~k~dss~s~~q~e~~~~~~~ 180 (716)
T KOG4593|consen 118 KGQEEKLQEQ-----------------LERNRNQCQANLKKELELLREKEDKLAELGTLRNKLDSSLSELQWEVMLQEMR 180 (716)
T ss_pred HHHHHHHHHH-----------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_pred hHHHHHHHHHHHHHHHHHHhhhhchHHHHHHHHHHHhhhhhhHHHHhhhhhHHHHHHhhHHHHHHHHHHHHhhhhhhhhh
Q 006114 175 TQMYEKKITELIKQLEIEHARSEGAEEQVDTMKKLISDNQKSIEQYEMENSTYQKALADTTQLYEKKIAELNKKLEDEHA 254 (660)
Q Consensus 175 ~~~~~~~~~~l~~~l~~e~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~ 254 (660)
-+++...+-.+.|++...+.+....-.++.....+|.... ++..-|......|.
T Consensus 181 ~~~~~s~l~~~eke~~~~~~ql~~~~q~~~~~~~~l~e~~----~~~qq~a~~~~ql~---------------------- 234 (716)
T KOG4593|consen 181 AKRLHSELQNEEKELDRQHKQLQEENQKIQELQASLEERA----DHEQQNAELEQQLS---------------------- 234 (716)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHhhHHHHHH----------------------
Q ss_pred hhhhhHHhHHHHHHHhhhhhccccchhHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHH---HHHHhhhhccHHHHHHHHH
Q 006114 255 CFEGAVEQLDMVKKLLSDYQNSNQGQKEVHELCVKLKETRQLHESAVYEVQTLKSEYK---NLLEEKETMSDELQAARQR 331 (660)
Q Consensus 255 ~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~Lk~~Le~e~~~~e~~e~E~~~lks~l~---~l~~~~~~~~eel~~~~k~ 331 (660)
+++..++.-..++-.|+.--.......+..+--+.+-...-.-.-+.+|+..|++.+. .++....+++-|...+...
T Consensus 235 ~~~ele~i~~~~~dqlqel~~l~~a~~q~~ee~~~~re~~~tv~~LqeE~e~Lqskl~~~~~l~~~~~~LELeN~~l~tk 314 (716)
T KOG4593|consen 235 LSEELEAINKNMKDQLQELEELERALSQLREELATLRENRETVGLLQEELEGLQSKLGRLEKLQSTLLGLELENEDLLTK 314 (716)
T ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHH
Q ss_pred HHH
Q 006114 332 LLV 334 (660)
Q Consensus 332 l~~ 334 (660)
+..
T Consensus 315 L~r 317 (716)
T KOG4593|consen 315 LQR 317 (716)
T ss_pred HHH
No 500
>PF10226 DUF2216: Uncharacterized conserved proteins (DUF2216); InterPro: IPR019359 Proteins in this entry are found in Metazoa and contain a coiled-coil domain. Some annotation suggests it might be PKR, the Hepatitis delta antigen-interacting protein A, but this could not be confirmed.
Probab=53.12 E-value=2.5e+02 Score=28.16 Aligned_cols=128 Identities=20% Similarity=0.332 Sum_probs=0.0
Q ss_pred hHHHHHHHHHHHhhHHHHHHhhhhhhhHHHHhhhhHHH---HHHHHHhhhhhhhhhhhhHHHHHHHHHHHhhhhhhhhhh
Q 006114 87 KYEFEKQLRESQISYDESMRNLVTRSEFLEKENAHLEL---EVEKILGELNHQKDQNNLKREKIVQLEISLKNSKQQQLD 163 (660)
Q Consensus 87 ~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 163 (660)
+|..|-=++.+|..=+|=|.-++.++--+..=|++|.. ||+.|+-.++.-.+.|
T Consensus 15 ~~skeel~~rLR~~E~ek~~~m~~~g~lm~evNrrlQ~hl~EIR~LKe~NqkLqedN----------------------- 71 (195)
T PF10226_consen 15 RWSKEELVRRLRRAEAEKMSLMVEHGRLMKEVNRRLQQHLNEIRGLKEVNQKLQEDN----------------------- 71 (195)
T ss_pred hcCHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----------------------
Q ss_pred hhhhHHHHHHhhHHHHHHHHHHHHHHHHHHhhhhchHHHHHHHHHHHhhhhhhHHHHhhhhhHHHHHHhhHHHHHHHHHH
Q 006114 164 NSSYQKVLADTTQMYEKKITELIKQLEIEHARSEGAEEQVDTMKKLISDNQKSIEQYEMENSTYQKALADTTQLYEKKIA 243 (660)
Q Consensus 164 ~~~~~~~~~~~~~~~~~~~~~l~~~l~~e~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ 243 (660)
+|+.+|--.|.+.+..-..+..+-...=.--+... ++.++ .|.+|++
T Consensus 72 ----------------qELRdLCCFLDddRqKgrklarEWQrFGryta~vm-------------r~eV~----~Y~~KL~ 118 (195)
T PF10226_consen 72 ----------------QELRDLCCFLDDDRQKGRKLAREWQRFGRYTASVM-------------RQEVA----QYQQKLK 118 (195)
T ss_pred ----------------HHHHHHHcccchhHHHhHHHhHHHHHhhhHHHHHH-------------HHHHH----HHHHHHH
Q ss_pred HHhhhhhhhhhhhhhhHHhHHHHHHHhhhhhccccchhHHHHHHHHHHHHH
Q 006114 244 ELNKKLEDEHACFEGAVEQLDMVKKLLSDYQNSNQGQKEVHELCVKLKETR 294 (660)
Q Consensus 244 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~Lk~~Le~e~ 294 (660)
+|.-+.+ .+...+-|+.+|...|..++
T Consensus 119 eLE~kq~------------------------~L~rEN~eLKElcl~LDeer 145 (195)
T PF10226_consen 119 ELEDKQE------------------------ELIRENLELKELCLYLDEER 145 (195)
T ss_pred HHHHHHH------------------------HHHHhHHHHHHHHHHHhccc
Done!