Query 006114
Match_columns 660
No_of_seqs 267 out of 1548
Neff 6.5
Searched_HMMs 29240
Date Mon Mar 25 16:19:15 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/006114.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/006114hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3nmw_A APC variant protein; AR 100.0 9E-28 3.1E-32 258.2 23.9 254 385-648 48-329 (354)
2 1xm9_A Plakophilin 1; armadill 100.0 8.7E-27 3E-31 258.1 27.7 273 370-648 3-401 (457)
3 3nmz_A APC variant protein; pr 99.9 1E-26 3.5E-31 257.8 23.4 252 387-648 166-445 (458)
4 4hxt_A De novo protein OR329; 99.9 2.5E-25 8.7E-30 221.9 27.9 233 407-650 2-238 (252)
5 3ul1_B Importin subunit alpha- 99.9 1.1E-25 3.9E-30 252.2 26.3 271 368-648 56-382 (510)
6 3l6x_A Catenin delta-1; cateni 99.9 2.7E-25 9.3E-30 252.3 25.6 290 366-656 45-390 (584)
7 3nmw_A APC variant protein; AR 99.9 1.1E-25 3.8E-30 241.9 20.6 239 368-614 72-337 (354)
8 4hxt_A De novo protein OR329; 99.9 1.3E-24 4.4E-29 216.8 25.6 235 369-613 2-243 (252)
9 3now_A UNC-45 protein, SD10334 99.9 1.6E-25 5.6E-30 262.0 21.9 275 368-651 494-780 (810)
10 4db8_A Armadillo-repeat protei 99.9 4.3E-25 1.5E-29 222.0 21.6 236 367-612 10-252 (252)
11 3now_A UNC-45 protein, SD10334 99.9 4.8E-25 1.6E-29 258.1 24.7 237 401-648 489-732 (810)
12 1xm9_A Plakophilin 1; armadill 99.9 6.8E-25 2.3E-29 242.8 24.5 275 366-651 41-447 (457)
13 4db8_A Armadillo-repeat protei 99.9 1.5E-24 5.1E-29 218.0 24.5 234 407-651 12-249 (252)
14 3ul1_B Importin subunit alpha- 99.9 1.6E-24 5.6E-29 242.8 26.1 273 366-648 97-425 (510)
15 3tpo_A Importin subunit alpha- 99.9 1.8E-24 6E-29 243.3 26.4 271 366-645 116-399 (529)
16 4b8j_A Importin subunit alpha- 99.9 6E-24 2.1E-28 237.3 27.6 274 368-650 73-355 (528)
17 3nmz_A APC variant protein; pr 99.9 1.2E-24 3.9E-29 241.4 21.0 238 368-613 188-452 (458)
18 4b8j_A Importin subunit alpha- 99.9 7.8E-24 2.7E-28 236.4 27.0 273 367-649 115-396 (528)
19 3l6x_A Catenin delta-1; cateni 99.9 1.5E-23 5.1E-28 238.0 26.4 282 367-659 88-485 (584)
20 4db6_A Armadillo repeat protei 99.9 3.5E-23 1.2E-27 202.5 24.9 200 403-612 8-210 (210)
21 3tpo_A Importin subunit alpha- 99.9 2.4E-23 8.1E-28 234.1 26.0 273 366-649 159-445 (529)
22 1wa5_B Importin alpha subunit; 99.9 1.4E-22 4.7E-27 226.8 28.8 271 367-648 128-407 (530)
23 1wa5_B Importin alpha subunit; 99.9 1.8E-22 6.2E-27 225.9 28.3 273 367-650 85-367 (530)
24 2jdq_A Importin alpha-1 subuni 99.9 3.9E-22 1.3E-26 216.0 27.9 269 369-648 64-342 (450)
25 3tt9_A Plakophilin-2; cell adh 99.9 7.2E-23 2.5E-27 207.7 18.0 196 407-612 8-230 (233)
26 1jdh_A Beta-catenin; beta-cate 99.9 1.6E-22 5.6E-27 223.8 22.3 269 369-649 59-335 (529)
27 1jdh_A Beta-catenin; beta-cate 99.9 2.6E-22 9E-27 222.2 23.4 265 367-636 99-410 (529)
28 2jdq_A Importin alpha-1 subuni 99.9 8.7E-22 3E-26 213.2 26.1 269 368-648 106-385 (450)
29 1xqr_A HSPBP1 protein; armadil 99.9 3.6E-21 1.2E-25 202.0 25.4 219 422-649 55-283 (296)
30 2z6h_A Catenin beta-1, beta-ca 99.9 1.3E-21 4.5E-26 224.7 24.0 270 369-650 56-333 (644)
31 2z6h_A Catenin beta-1, beta-ca 99.9 6.4E-21 2.2E-25 219.0 28.0 264 367-635 96-406 (644)
32 4db6_A Armadillo repeat protei 99.9 1.6E-20 5.3E-25 183.7 23.1 193 446-649 10-205 (210)
33 3tt9_A Plakophilin-2; cell adh 99.9 6.3E-21 2.1E-25 193.5 16.2 194 368-562 7-230 (233)
34 2z6g_A B-catenin; FULL-length, 99.8 2.8E-20 9.5E-25 219.0 23.1 272 368-651 191-470 (780)
35 2z6g_A B-catenin; FULL-length, 99.8 2.9E-20 9.9E-25 218.8 22.7 271 367-649 358-659 (780)
36 1xqr_A HSPBP1 protein; armadil 99.8 1.6E-19 5.4E-24 189.5 18.0 171 393-564 67-241 (296)
37 3opb_A SWI5-dependent HO expre 99.8 2.5E-19 8.4E-24 207.1 20.5 241 399-648 449-723 (778)
38 3opb_A SWI5-dependent HO expre 99.7 2.9E-17 1E-21 189.8 14.2 265 366-639 454-763 (778)
39 3ltm_A Alpha-REP4; protein eng 99.4 1.6E-11 5.5E-16 120.0 21.8 185 406-652 18-202 (211)
40 1oyz_A Hypothetical protein YI 99.4 5.1E-12 1.8E-16 129.1 16.8 198 368-610 22-220 (280)
41 3ltj_A Alpharep-4; protein eng 99.4 2.8E-11 9.6E-16 117.4 20.3 186 407-654 14-199 (201)
42 1oyz_A Hypothetical protein YI 99.4 5.2E-11 1.8E-15 121.6 21.7 198 403-649 19-217 (280)
43 3ltm_A Alpha-REP4; protein eng 99.4 1.9E-11 6.4E-16 119.6 17.3 190 367-614 17-206 (211)
44 3ltj_A Alpharep-4; protein eng 99.3 2.7E-11 9.1E-16 117.6 17.6 189 364-610 9-197 (201)
45 3grl_A General vesicular trans 99.3 3.6E-11 1.2E-15 136.2 19.9 241 405-648 120-389 (651)
46 3grl_A General vesicular trans 99.3 2.7E-11 9.2E-16 137.3 18.5 246 402-657 55-350 (651)
47 4gmo_A Putative uncharacterize 99.2 8.6E-11 2.9E-15 136.4 15.5 218 407-633 34-286 (684)
48 4gmo_A Putative uncharacterize 99.0 2.2E-09 7.6E-14 124.5 13.4 167 448-624 34-228 (684)
49 2vgl_B AP-2 complex subunit be 98.9 5E-08 1.7E-12 111.0 21.0 270 371-655 88-425 (591)
50 4fdd_A Transportin-1; heat rep 98.9 7.5E-09 2.6E-13 122.1 13.9 265 369-648 174-466 (852)
51 1b3u_A Protein (protein phosph 98.8 6.2E-08 2.1E-12 107.7 17.6 255 374-650 329-584 (588)
52 4fdd_A Transportin-1; heat rep 98.8 1.6E-08 5.4E-13 119.3 13.4 265 369-649 128-425 (852)
53 1b3u_A Protein (protein phosph 98.8 5.4E-08 1.8E-12 108.2 15.9 218 374-611 169-392 (588)
54 2vgl_B AP-2 complex subunit be 98.7 6.6E-08 2.3E-12 110.0 15.0 247 371-648 51-306 (591)
55 1w63_A Adapter-related protein 98.7 4.2E-07 1.4E-11 104.1 18.1 219 370-613 108-381 (618)
56 2qk2_A LP04448P; mini spindles 98.5 1.6E-06 5.6E-11 86.6 14.2 183 411-612 19-206 (242)
57 1ibr_B P95, importin beta-1 su 98.4 1.7E-06 5.9E-11 93.0 14.7 225 408-648 173-432 (462)
58 1te4_A Conserved protein MTH18 98.4 4.3E-08 1.5E-12 89.2 0.6 117 408-557 13-129 (131)
59 1w63_A Adapter-related protein 98.4 7.2E-06 2.5E-10 93.8 18.3 189 409-612 109-343 (618)
60 1ibr_B P95, importin beta-1 su 98.3 3E-06 1E-10 91.1 13.7 191 409-613 219-439 (462)
61 1te4_A Conserved protein MTH18 98.3 6.8E-07 2.3E-11 81.2 6.5 121 367-517 10-130 (131)
62 2db0_A 253AA long hypothetical 98.3 3.7E-05 1.3E-09 74.3 18.2 187 402-617 27-216 (253)
63 1ho8_A Vacuolar ATP synthase s 98.3 1.5E-05 5E-10 87.8 17.6 193 411-611 171-476 (480)
64 3b2a_A TON_1937, putative unch 98.3 3.6E-05 1.2E-09 77.0 18.7 219 407-647 33-255 (265)
65 1qgr_A Protein (importin beta 98.2 1.5E-05 5.1E-10 93.1 16.7 225 408-648 218-474 (876)
66 2bpt_A Importin beta-1 subunit 98.2 1.8E-05 6.3E-10 92.1 17.3 227 407-648 266-524 (861)
67 2bpt_A Importin beta-1 subunit 98.2 3.7E-05 1.3E-09 89.5 18.4 223 408-648 225-477 (861)
68 1qgr_A Protein (importin beta 98.1 6.2E-05 2.1E-09 87.8 19.8 225 408-648 173-432 (876)
69 4ady_A RPN2, 26S proteasome re 98.1 0.00014 4.6E-09 86.3 21.4 191 409-645 474-668 (963)
70 1i84_S Smooth muscle myosin he 98.0 1E-05 3.6E-10 99.2 10.8 44 170-213 1001-1044(1184)
71 1i84_S Smooth muscle myosin he 98.0 1.3E-05 4.6E-10 98.2 10.2 43 113-155 916-958 (1184)
72 1u6g_C TIP120 protein, CAND1; 98.0 3.4E-05 1.2E-09 94.5 13.2 210 408-635 7-225 (1230)
73 2qk2_A LP04448P; mini spindles 97.9 0.00021 7.1E-09 71.2 15.6 141 409-561 58-205 (242)
74 4ady_A RPN2, 26S proteasome re 97.9 0.00021 7E-09 84.8 17.7 167 409-613 509-678 (963)
75 1u6g_C TIP120 protein, CAND1; 97.9 2.2E-05 7.4E-10 96.2 9.6 258 370-648 7-279 (1230)
76 2vgl_A Adaptor protein complex 97.9 0.00027 9.2E-09 81.0 18.0 236 370-637 147-418 (621)
77 2vgl_A Adaptor protein complex 97.8 0.0002 6.9E-09 82.0 16.2 247 371-648 113-393 (621)
78 2qk1_A Protein STU2; STU2P, XM 97.8 8.2E-05 2.8E-09 75.5 11.5 191 413-611 22-220 (249)
79 3dad_A FH1/FH2 domain-containi 97.8 0.0013 4.4E-08 69.3 20.4 189 409-601 120-326 (339)
80 1c1g_A Tropomyosin; contractIl 97.6 0.064 2.2E-06 52.8 36.8 19 240-258 181-199 (284)
81 1c1g_A Tropomyosin; contractIl 97.6 0.076 2.6E-06 52.3 35.4 8 341-348 269-276 (284)
82 3b2a_A TON_1937, putative unch 97.5 0.0013 4.6E-08 65.8 14.4 176 448-648 33-213 (265)
83 2qk1_A Protein STU2; STU2P, XM 97.3 0.002 6.7E-08 65.2 13.5 149 409-561 62-220 (249)
84 3tjz_B Coatomer subunit gamma; 97.3 0.0067 2.3E-07 64.8 18.0 138 409-564 70-208 (355)
85 3tjz_B Coatomer subunit gamma; 97.3 0.0031 1.1E-07 67.3 14.8 198 409-645 106-308 (355)
86 1ho8_A Vacuolar ATP synthase s 97.3 0.033 1.1E-06 61.3 23.0 224 407-642 77-339 (480)
87 2db0_A 253AA long hypothetical 97.2 0.024 8.1E-07 55.0 18.0 179 447-654 31-211 (253)
88 2iw3_A Elongation factor 3A; a 97.2 0.03 1E-06 67.0 23.3 216 407-649 95-320 (986)
89 3dad_A FH1/FH2 domain-containi 97.0 0.064 2.2E-06 56.5 20.5 186 452-639 122-322 (339)
90 3ol1_A Vimentin; structural ge 96.1 0.099 3.4E-06 47.0 13.3 100 102-250 19-118 (119)
91 3o0z_A RHO-associated protein 96.0 0.53 1.8E-05 44.6 18.2 148 175-342 8-162 (168)
92 4ffb_C Protein STU2; tubulin f 95.9 0.14 4.7E-06 51.9 15.2 192 408-613 11-214 (278)
93 3ebb_A Phospholipase A2-activa 95.8 0.25 8.6E-06 51.4 16.7 183 409-604 105-299 (304)
94 2iw3_A Elongation factor 3A; a 95.7 0.2 6.8E-06 60.1 17.4 209 408-644 55-272 (986)
95 2v71_A Nuclear distribution pr 95.7 0.49 1.7E-05 45.7 16.9 71 222-316 102-175 (189)
96 1lrv_A LRV, leucine-rich repea 95.6 0.013 4.4E-07 59.3 6.0 69 534-606 172-241 (244)
97 2ocy_A RAB guanine nucleotide 95.4 0.67 2.3E-05 43.3 16.4 92 174-271 52-146 (154)
98 1upk_A MO25 protein; transfera 95.4 0.83 2.8E-05 48.0 18.9 200 442-653 72-286 (341)
99 1upk_A MO25 protein; transfera 95.2 1.3 4.4E-05 46.6 19.4 206 401-614 72-286 (341)
100 2of3_A ZYG-9; multifunctional 95.1 0.74 2.5E-05 47.0 17.1 178 408-611 47-236 (266)
101 3o0z_A RHO-associated protein 95.1 1.7 5.9E-05 41.1 18.0 34 104-137 49-82 (168)
102 3ol1_A Vimentin; structural ge 95.0 0.19 6.6E-06 45.1 11.1 41 174-214 14-54 (119)
103 2efr_A General control protein 95.0 2.4 8.2E-05 39.7 19.3 70 145-214 70-139 (155)
104 2dfs_A Myosin-5A; myosin-V, in 94.9 0.28 9.6E-06 59.5 15.5 60 173-235 984-1043(1080)
105 2dfs_A Myosin-5A; myosin-V, in 94.8 0.23 7.8E-06 60.3 14.4 46 199-244 982-1027(1080)
106 2fv2_A RCD1 required for cell 94.8 0.77 2.6E-05 46.5 15.8 153 467-621 74-234 (268)
107 3ebb_A Phospholipase A2-activa 94.8 0.98 3.4E-05 46.9 17.3 190 450-649 105-302 (304)
108 2f31_A Diaphanous protein homo 94.4 0.67 2.3E-05 46.1 14.7 153 446-601 41-218 (233)
109 2f31_A Diaphanous protein homo 94.4 0.39 1.3E-05 47.8 12.8 153 397-551 34-218 (233)
110 2fv2_A RCD1 required for cell 94.4 0.47 1.6E-05 48.1 13.1 171 425-609 74-266 (268)
111 4ffb_C Protein STU2; tubulin f 94.3 0.63 2.2E-05 46.9 14.5 146 410-562 58-213 (278)
112 3na7_A HP0958; flagellar bioge 94.3 1.1 3.6E-05 45.4 15.9 13 237-249 147-159 (256)
113 3eg5_B Protein diaphanous homo 94.2 1 3.5E-05 48.3 16.5 154 442-599 104-282 (383)
114 3na7_A HP0958; flagellar bioge 94.0 3.1 0.00011 41.9 18.8 45 170-214 101-145 (256)
115 3eg5_B Protein diaphanous homo 94.0 1.2 4E-05 47.8 16.3 153 397-551 100-284 (383)
116 2efr_A General control protein 93.9 4.1 0.00014 38.1 20.0 80 235-327 72-151 (155)
117 3oc3_A Helicase MOT1, MOT1; re 93.9 0.11 3.8E-06 58.1 8.1 187 421-649 242-432 (800)
118 4hat_C Exportin-1; heat repeat 93.9 0.46 1.6E-05 57.4 14.3 141 461-613 465-620 (1023)
119 3l9t_A Putative uncharacterize 93.9 0.54 1.8E-05 47.1 12.4 143 450-621 72-218 (240)
120 1wa5_C Importin alpha RE-expor 93.9 1.3 4.3E-05 52.8 18.0 179 414-607 462-666 (960)
121 2e7s_A RAB guanine nucleotide 93.6 0.17 5.8E-06 46.2 7.5 89 176-270 42-133 (135)
122 3c2g_A SYS-1 protein; beta-cat 93.5 0.98 3.4E-05 47.7 13.9 110 431-542 266-377 (619)
123 1wa5_C Importin alpha RE-expor 93.5 2.5 8.6E-05 50.2 19.8 134 422-561 376-525 (960)
124 2bnx_A Diaphanous protein homo 93.5 1.7 5.8E-05 46.6 16.5 153 397-551 38-222 (386)
125 3vkg_A Dynein heavy chain, cyt 93.4 2.8 9.7E-05 56.0 21.1 143 193-335 1926-2075(3245)
126 3s4r_A Vimentin; alpha-helix, 92.9 0.67 2.3E-05 39.8 9.7 39 176-214 52-90 (93)
127 2x19_B Importin-13; nuclear tr 92.9 2.7 9.4E-05 49.5 18.7 135 460-612 460-600 (963)
128 3tnu_A Keratin, type I cytoske 92.8 1.1 3.7E-05 40.8 11.6 90 63-191 41-130 (131)
129 2fxo_A Myosin heavy chain, car 92.7 3.3 0.00011 37.4 14.8 39 176-214 16-54 (129)
130 2bnx_A Diaphanous protein homo 92.7 1.8 6.2E-05 46.4 15.2 150 447-599 46-220 (386)
131 3tnu_B Keratin, type II cytosk 92.3 1 3.6E-05 40.7 10.9 89 63-190 39-127 (129)
132 4hat_C Exportin-1; heat repeat 91.6 0.81 2.8E-05 55.3 12.0 139 419-564 465-621 (1023)
133 3c2g_A SYS-1 protein; beta-cat 91.4 0.87 3E-05 48.1 10.3 122 396-518 273-401 (619)
134 2fxo_A Myosin heavy chain, car 91.2 6.5 0.00022 35.4 15.0 81 113-214 37-117 (129)
135 1lrv_A LRV, leucine-rich repea 91.2 0.18 6.2E-06 50.8 5.0 54 441-513 67-120 (244)
136 3l9t_A Putative uncharacterize 90.8 2.9 9.8E-05 41.9 13.1 134 414-567 78-213 (240)
137 3gjx_A Exportin-1; transport, 90.8 4.7 0.00016 48.9 17.4 224 408-650 29-272 (1073)
138 2x1g_F Cadmus; transport prote 90.5 2.8 9.6E-05 49.6 15.2 169 422-612 436-616 (971)
139 3m1i_C Exportin-1; heat repeat 90.5 3.4 0.00012 49.7 16.0 101 461-562 465-570 (1049)
140 3tnu_B Keratin, type II cytosk 90.3 2.4 8.3E-05 38.3 11.1 74 177-250 12-85 (129)
141 3oja_B Anopheles plasmodium-re 90.2 2.2 7.4E-05 47.8 13.2 41 175-215 539-579 (597)
142 3swk_A Vimentin; cytoskeleton, 90.0 1.2 4.2E-05 37.5 8.3 35 284-318 31-65 (86)
143 3oc3_A Helicase MOT1, MOT1; re 90.0 0.44 1.5E-05 53.4 6.9 218 400-649 161-400 (800)
144 3m1i_C Exportin-1; heat repeat 89.6 6.6 0.00023 47.1 17.6 197 417-629 26-241 (1049)
145 3vkg_A Dynein heavy chain, cyt 89.6 46 0.0016 44.9 26.2 31 282-312 2043-2073(3245)
146 2of3_A ZYG-9; multifunctional 89.3 1.4 4.7E-05 44.9 9.7 130 418-560 98-235 (266)
147 2ocy_A RAB guanine nucleotide 89.2 12 0.00042 34.8 15.0 110 198-313 17-126 (154)
148 2eqb_B RAB guanine nucleotide 88.8 5.1 0.00018 34.4 11.2 86 256-353 7-92 (97)
149 3m48_A General control protein 88.5 0.37 1.2E-05 33.0 3.1 31 105-135 2-32 (33)
150 2x1g_F Cadmus; transport prote 87.9 3.5 0.00012 48.8 13.4 132 419-562 476-616 (971)
151 3tnu_A Keratin, type I cytoske 87.8 3.4 0.00012 37.4 10.2 74 177-250 14-87 (131)
152 1uo4_A General control protein 86.7 0.58 2E-05 32.2 3.2 31 105-135 3-33 (34)
153 2v71_A Nuclear distribution pr 86.6 24 0.00081 34.0 17.1 23 11-33 10-33 (189)
154 1deq_A Fibrinogen (alpha chain 86.6 6.9 0.00023 41.4 12.9 112 226-358 53-169 (390)
155 3oja_B Anopheles plasmodium-re 86.3 6.1 0.00021 44.1 13.6 48 167-214 517-564 (597)
156 3ghg_A Fibrinogen alpha chain; 86.0 5.9 0.0002 43.5 12.4 117 227-360 51-168 (562)
157 3o2t_A Symplekin; heat repeat, 85.9 36 0.0012 36.3 18.5 177 407-618 63-264 (386)
158 3gs3_A Symplekin, LD45768P; he 85.8 31 0.0011 34.7 19.3 63 408-476 54-117 (257)
159 3c3g_A Alpha/beta peptide with 85.4 0.98 3.3E-05 30.8 3.8 30 105-134 2-31 (33)
160 1gk4_A Vimentin; intermediate 85.0 6.8 0.00023 32.7 9.9 72 87-193 10-81 (84)
161 2eqb_B RAB guanine nucleotide 84.9 14 0.00049 31.7 11.8 70 176-251 22-94 (97)
162 1kd8_B GABH BLL, GCN4 acid bas 84.5 1.3 4.3E-05 30.9 4.1 32 105-136 3-34 (36)
163 3c3f_A Alpha/beta peptide with 84.4 1.1 3.9E-05 30.6 3.8 30 105-134 3-32 (34)
164 3ibv_A Exportin-T; karyopherin 84.3 28 0.00097 41.6 18.8 212 419-648 20-255 (980)
165 1kd8_A GABH AIV, GCN4 acid bas 84.3 0.93 3.2E-05 31.5 3.3 30 105-134 3-32 (36)
166 1x8y_A Lamin A/C; structural p 84.2 6.3 0.00022 33.1 9.3 73 87-194 12-84 (86)
167 1lsh_A Lipovitellin (LV-1N, LV 83.6 5.1 0.00017 48.5 11.9 132 450-611 393-543 (1056)
168 1f5n_A Interferon-induced guan 82.9 68 0.0023 36.2 22.8 58 183-254 483-540 (592)
169 2oxj_A Hybrid alpha/beta pepti 82.8 1.3 4.5E-05 30.4 3.6 30 105-134 3-32 (34)
170 3u0r_A Apoptosis inhibitor 5; 82.4 9.6 0.00033 41.9 12.3 119 461-607 40-159 (507)
171 2b9c_A Striated-muscle alpha t 82.0 17 0.00059 33.5 12.2 108 128-249 38-145 (147)
172 3gjx_A Exportin-1; transport, 81.8 21 0.00073 43.2 16.3 220 366-612 25-276 (1073)
173 2wq1_A General control protein 81.7 1.8 6.1E-05 29.6 3.9 29 105-133 2-30 (33)
174 2hy6_A General control protein 81.6 1.4 4.8E-05 30.3 3.3 29 105-133 3-31 (34)
175 2x19_B Importin-13; nuclear tr 81.1 24 0.00081 41.4 16.3 129 460-610 36-174 (963)
176 3u0r_A Apoptosis inhibitor 5; 80.9 15 0.00052 40.3 13.2 117 503-648 40-158 (507)
177 2bni_A General control protein 80.7 1.5 5E-05 30.2 3.2 30 105-134 3-32 (34)
178 3gae_A Protein DOA1; UFD3, CDC 80.5 4.5 0.00015 40.7 8.4 102 460-564 101-220 (253)
179 2e7s_A RAB guanine nucleotide 80.5 4.5 0.00016 36.8 7.5 73 277-355 42-114 (135)
180 3swk_A Vimentin; cytoskeleton, 80.2 12 0.00042 31.3 9.6 68 284-351 3-77 (86)
181 3ibv_A Exportin-T; karyopherin 78.6 46 0.0016 39.7 17.8 187 407-613 40-262 (980)
182 2r2v_A GCN4 leucine zipper; co 77.2 3 0.0001 28.7 3.9 29 105-133 3-31 (34)
183 1lsh_A Lipovitellin (LV-1N, LV 75.6 17 0.00058 44.0 12.9 163 410-613 394-578 (1056)
184 3s4r_A Vimentin; alpha-helix, 75.6 25 0.00087 29.8 10.4 59 195-266 24-82 (93)
185 1m1j_A Fibrinogen alpha subuni 74.9 40 0.0014 36.5 13.8 113 227-360 52-169 (491)
186 2z5i_A TM, general control pro 73.5 5.9 0.0002 30.1 5.2 42 108-149 3-44 (52)
187 3a6p_A Exportin-5; exportin-5, 73.4 69 0.0024 39.1 17.7 127 420-561 26-162 (1204)
188 1deq_A Fibrinogen (alpha chain 73.3 34 0.0012 36.2 12.7 75 170-251 57-131 (390)
189 3gae_A Protein DOA1; UFD3, CDC 70.8 18 0.00062 36.2 9.8 101 502-613 101-219 (253)
190 3mq9_A Bone marrow stromal ant 70.1 60 0.0021 34.9 14.6 69 171-243 371-439 (471)
191 3mov_A Lamin-B1; LMNB1, B-type 69.7 15 0.00052 31.4 7.6 73 85-192 19-91 (95)
192 3vp9_A General transcriptional 66.1 15 0.0005 31.3 6.6 75 101-192 12-87 (92)
193 3pst_A Protein DOA1; protein d 66.1 48 0.0016 35.8 12.4 102 460-564 273-392 (425)
194 3bas_A Myosin heavy chain, str 65.4 55 0.0019 27.4 10.2 43 172-214 13-55 (89)
195 3ghg_A Fibrinogen alpha chain; 64.6 48 0.0016 36.6 11.9 45 170-214 54-98 (562)
196 3mxz_A Tubulin-specific chaper 64.4 63 0.0022 28.5 10.8 95 170-279 19-113 (116)
197 3hnw_A Uncharacterized protein 64.4 45 0.0015 30.4 10.2 66 282-347 69-134 (138)
198 3g2s_A C-terminal fragment of 63.7 10 0.00036 35.0 5.8 70 449-519 49-125 (149)
199 3hnw_A Uncharacterized protein 62.6 31 0.0011 31.4 8.7 25 171-195 80-104 (138)
200 3u1c_A Tropomyosin alpha-1 cha 62.2 75 0.0026 27.2 12.5 88 236-350 5-92 (101)
201 3oja_A Leucine-rich immune mol 62.1 1.2E+02 0.0042 32.5 15.2 22 170-191 446-467 (487)
202 4fi5_A Nucleoprotein; structur 61.6 24 0.00081 30.9 7.2 22 234-255 70-91 (113)
203 2k48_A Nucleoprotein; viral pr 61.2 15 0.00051 31.8 5.8 68 170-254 32-103 (107)
204 3mq7_A Bone marrow stromal ant 60.8 45 0.0016 29.4 8.9 73 259-334 30-103 (121)
205 3l3f_X Protein DOA1, DOA1/UFD3 60.2 17 0.00059 38.5 7.5 101 460-563 210-328 (362)
206 3aco_A Pacsin2, protein kinase 60.2 1.6E+02 0.0054 30.3 20.2 99 168-276 156-261 (350)
207 1t2k_D Cyclic-AMP-dependent tr 59.8 17 0.00057 28.2 5.5 41 96-136 15-55 (61)
208 3mq9_A Bone marrow stromal ant 59.6 1.1E+02 0.0037 32.8 14.2 47 57-104 370-416 (471)
209 1x5b_A Signal transducing adap 59.5 14 0.00049 34.5 6.1 70 449-519 53-124 (163)
210 3he5_A Synzip1; heterodimeric 59.4 23 0.00079 25.3 5.5 16 175-190 33-48 (49)
211 2z5i_A TM, general control pro 58.8 23 0.00079 26.8 5.9 42 165-206 4-45 (52)
212 1x79_B RAB GTPase binding effe 58.4 96 0.0033 27.2 11.5 66 58-134 36-101 (112)
213 2k48_A Nucleoprotein; viral pr 58.2 42 0.0014 29.0 8.1 63 213-275 40-103 (107)
214 3hhm_B NISH2 P85alpha; PI3KCA, 58.0 1.1E+02 0.0036 32.5 13.2 123 183-319 129-257 (373)
215 3u59_A Tropomyosin beta chain; 57.9 88 0.003 26.6 10.7 54 297-350 39-92 (101)
216 2dgc_A Protein (GCN4); basic d 57.6 16 0.00055 28.8 5.1 40 96-135 23-62 (63)
217 2ic6_A Nucleocapsid protein; h 57.5 21 0.00071 29.4 5.8 19 236-254 55-73 (78)
218 1jnm_A Proto-oncogene C-JUN; B 55.6 21 0.00072 27.8 5.5 42 95-136 14-55 (62)
219 2wt7_A Proto-oncogene protein 54.6 23 0.00078 27.7 5.5 42 95-136 15-56 (63)
220 2ic6_A Nucleocapsid protein; h 54.0 51 0.0017 27.1 7.6 57 219-275 16-73 (78)
221 3qml_C Protein SLS1, nucleotid 53.1 91 0.0031 32.2 11.2 135 421-560 42-188 (315)
222 3zyq_A Hepatocyte growth facto 52.7 16 0.00056 35.9 5.5 70 449-519 46-117 (226)
223 3pst_A Protein DOA1; protein d 52.7 2E+02 0.0068 31.0 14.3 101 502-613 273-391 (425)
224 3haj_A Human pacsin2 F-BAR; pa 52.1 2.6E+02 0.0088 30.3 25.4 99 167-274 148-252 (486)
225 1x79_B RAB GTPase binding effe 51.6 1.3E+02 0.0043 26.5 11.4 62 233-310 38-99 (112)
226 3bas_A Myosin heavy chain, str 50.8 98 0.0033 25.8 9.3 17 171-187 68-84 (89)
227 3mov_A Lamin-B1; LMNB1, B-type 49.7 53 0.0018 27.9 7.5 29 222-250 19-47 (95)
228 3abh_A Pacsin2, protein kinase 49.6 2.1E+02 0.0073 28.6 21.4 34 14-47 30-74 (312)
229 3oja_A Leucine-rich immune mol 49.5 1.4E+02 0.0047 32.2 12.9 23 238-260 454-476 (487)
230 1mhq_A ADP-ribosylation factor 48.5 30 0.001 31.8 6.2 70 449-519 39-115 (148)
231 4fi5_A Nucleoprotein; structur 48.4 32 0.0011 30.1 5.8 64 212-275 26-90 (113)
232 3a6p_A Exportin-5; exportin-5, 46.7 2.4E+02 0.0082 34.3 15.6 129 461-611 25-162 (1204)
233 2ic9_A Nucleocapsid protein; h 46.5 37 0.0013 29.0 5.8 36 219-254 34-73 (96)
234 1dvp_A HRS, hepatocyte growth 45.9 24 0.00082 34.4 5.5 70 449-519 43-114 (220)
235 1hjb_A Ccaat/enhancer binding 44.8 39 0.0013 28.4 5.7 31 107-137 40-70 (87)
236 3ldz_A STAM-1, signal transduc 44.6 28 0.00096 31.6 5.3 69 449-519 43-113 (140)
237 3m3w_A Pacsin3, protein kinase 44.2 2.7E+02 0.0093 28.3 20.2 17 14-30 21-37 (320)
238 1ci6_A Transcription factor AT 44.1 45 0.0016 26.1 5.7 42 96-137 16-57 (63)
239 3cve_A Homer protein homolog 1 43.4 69 0.0024 25.9 6.7 46 165-210 6-51 (72)
240 3u1c_A Tropomyosin alpha-1 cha 43.2 1.5E+02 0.0053 25.2 12.4 34 126-159 4-37 (101)
241 3l3f_X Protein DOA1, DOA1/UFD3 42.6 1.4E+02 0.0049 31.4 11.1 100 502-612 210-327 (362)
242 2ic9_A Nucleocapsid protein; h 42.5 99 0.0034 26.3 7.8 57 219-275 16-73 (96)
243 1x5b_A Signal transducing adap 42.5 38 0.0013 31.5 6.0 69 409-477 54-124 (163)
244 1gqe_A Release factor 2, RF2; 42.4 1.6E+02 0.0056 31.0 11.4 74 240-313 32-112 (365)
245 2v4h_A NF-kappa-B essential mo 41.9 1.8E+02 0.006 25.4 10.3 43 173-215 62-104 (110)
246 3zyq_A Hepatocyte growth facto 41.7 31 0.0011 33.8 5.6 69 409-477 47-117 (226)
247 1vsy_5 Proteasome activator BL 41.6 1.6E+02 0.0055 35.3 12.7 182 409-611 135-365 (997)
248 1xaw_A Occludin; coiled-coil, 41.5 2.1E+02 0.007 26.1 10.7 63 144-214 72-136 (140)
249 1juq_A ADP-ribosylation factor 41.0 44 0.0015 31.4 6.2 70 449-519 51-127 (171)
250 1elk_A Target of MYB1; superhe 40.2 46 0.0016 30.7 6.1 71 449-519 54-129 (157)
251 2v66_B Nuclear distribution pr 39.2 2E+02 0.0067 25.2 13.6 100 10-128 3-102 (111)
252 1gu4_A CAAT/enhancer binding p 39.0 53 0.0018 27.0 5.5 31 107-137 40-70 (78)
253 1go4_E MAD1 (mitotic arrest de 38.5 77 0.0026 27.3 6.7 33 103-135 12-44 (100)
254 2efk_A CDC42-interacting prote 37.9 3.1E+02 0.01 27.0 22.2 16 15-30 9-24 (301)
255 1m1j_A Fibrinogen alpha subuni 37.2 3.2E+02 0.011 29.6 12.6 98 170-301 55-152 (491)
256 3cvf_A Homer-3, homer protein 36.9 89 0.0031 25.7 6.6 46 165-210 12-57 (79)
257 1m1j_B Fibrinogen beta chain; 36.6 4.5E+02 0.015 28.6 15.3 38 178-215 98-135 (464)
258 3ldz_A STAM-1, signal transduc 36.6 83 0.0028 28.3 7.2 69 491-560 43-113 (140)
259 1gk4_A Vimentin; intermediate 36.4 1.8E+02 0.0061 23.9 9.6 28 222-249 8-35 (84)
260 3a7p_A Autophagy protein 16; c 35.7 1.4E+02 0.0047 27.7 8.3 58 171-228 73-130 (152)
261 3cve_A Homer protein homolog 1 34.4 1.8E+02 0.0061 23.5 7.8 31 185-215 5-35 (72)
262 1zoq_C CREB-binding protein, i 34.0 27 0.00093 25.6 2.6 34 623-656 1-34 (47)
263 1mhq_A ADP-ribosylation factor 33.9 1.3E+02 0.0044 27.4 8.0 73 532-611 38-116 (148)
264 3he5_A Synzip1; heterodimeric 33.6 1.3E+02 0.0044 21.5 6.4 16 235-250 33-48 (49)
265 1dh3_A Transcription factor CR 33.6 36 0.0012 26.0 3.5 31 105-135 24-54 (55)
266 3g2s_A C-terminal fragment of 33.5 68 0.0023 29.4 6.1 69 409-477 50-125 (149)
267 3qh9_A Liprin-beta-2; coiled-c 33.5 1.9E+02 0.0065 23.8 7.9 20 139-158 34-53 (81)
268 2jee_A YIIU; FTSZ, septum, coi 33.5 2E+02 0.007 23.7 8.4 42 103-144 6-47 (81)
269 1h7c_A Tubulin-specific chaper 32.9 2.4E+02 0.0082 24.4 9.6 88 170-274 18-105 (108)
270 3i00_A HIP-I, huntingtin-inter 32.8 1.2E+02 0.0042 26.8 7.4 40 175-214 17-60 (120)
271 2no2_A HIP-I, huntingtin-inter 32.6 2.4E+02 0.0083 24.3 11.1 22 275-296 19-40 (107)
272 3qh9_A Liprin-beta-2; coiled-c 31.5 1.9E+02 0.0067 23.8 7.6 49 281-329 26-74 (81)
273 2jee_A YIIU; FTSZ, septum, coi 31.4 2.2E+02 0.0076 23.5 9.5 49 166-214 13-68 (81)
274 3o2t_A Symplekin; heat repeat, 31.2 1.1E+02 0.0037 32.6 8.0 104 531-648 62-178 (386)
275 3cvf_A Homer-3, homer protein 31.1 1E+02 0.0035 25.4 6.0 34 181-214 7-40 (79)
276 3iox_A AGI/II, PA; alpha helix 31.0 3.3E+02 0.011 29.8 11.7 37 211-247 5-41 (497)
277 4atg_A TAF6; transcription, TF 30.6 72 0.0025 30.7 5.9 127 409-541 42-177 (196)
278 3u59_A Tropomyosin beta chain; 30.4 2.5E+02 0.0085 23.7 12.3 35 126-160 4-38 (101)
279 1x8y_A Lamin A/C; structural p 30.0 2.3E+02 0.0079 23.3 9.7 29 222-250 10-38 (86)
280 1gk6_A Vimentin; intermediate 30.0 1.5E+02 0.0053 22.6 6.6 26 168-193 30-55 (59)
281 4gkw_A Spindle assembly abnorm 29.0 3.2E+02 0.011 24.5 17.6 41 178-232 117-157 (167)
282 1jei_A Emerin; membrane protei 29.0 19 0.00066 27.5 1.2 18 231-248 26-43 (53)
283 3c3g_A Alpha/beta peptide with 28.7 98 0.0034 21.1 4.4 28 284-311 3-30 (33)
284 1juq_A ADP-ribosylation factor 28.7 1.7E+02 0.0057 27.3 8.0 72 533-611 51-128 (171)
285 1m1j_B Fibrinogen beta chain; 28.7 5.7E+02 0.02 27.7 13.2 12 238-249 180-191 (464)
286 3trt_A Vimentin; cytoskeleton, 28.0 2.1E+02 0.0071 22.7 7.5 56 227-309 22-77 (77)
287 1deb_A APC protein, adenomatou 27.4 1.3E+02 0.0045 22.5 5.4 23 108-130 8-30 (54)
288 3swy_A Cyclic nucleotide-gated 27.3 1.6E+02 0.0056 21.6 5.9 35 198-232 2-36 (46)
289 2oto_A M protein; helical coil 27.1 3.6E+02 0.012 24.5 14.6 114 134-255 25-142 (155)
290 3swf_A CGMP-gated cation chann 26.8 1.5E+02 0.0052 24.0 6.2 36 197-232 3-38 (74)
291 1dvp_A HRS, hepatocyte growth 26.3 63 0.0022 31.3 4.8 69 409-477 44-114 (220)
292 3c3f_A Alpha/beta peptide with 26.2 1.1E+02 0.0039 20.9 4.4 28 284-311 4-31 (34)
293 3gs3_A Symplekin, LD45768P; he 25.9 4.9E+02 0.017 25.7 16.4 137 464-609 30-171 (257)
294 1m1j_C Fibrinogen gamma chain; 25.9 2.6E+02 0.0089 29.9 9.8 45 170-214 24-68 (409)
295 1xaw_A Occludin; coiled-coil, 25.7 3.8E+02 0.013 24.3 9.4 86 185-275 50-137 (140)
296 1dip_A Delta-sleep-inducing pe 25.6 32 0.0011 27.9 2.0 34 198-231 12-45 (78)
297 4atg_A TAF6; transcription, TF 25.0 4.6E+02 0.016 25.0 10.6 122 503-639 58-184 (196)
298 1wt6_A Myotonin-protein kinase 25.0 2.9E+02 0.0099 22.8 9.2 34 282-315 11-44 (81)
299 3vld_A DNA mismatch repair pro 24.4 5E+02 0.017 28.5 11.7 109 443-557 111-221 (500)
300 3ghg_B Fibrinogen beta chain; 24.1 3.5E+02 0.012 29.3 10.4 106 231-357 82-197 (461)
301 1ic2_A Tropomyosin alpha chain 23.9 2.9E+02 0.0098 22.3 9.4 42 145-186 6-47 (81)
302 1gk7_A Vimentin; intermediate 23.9 39 0.0013 24.1 1.9 15 113-127 23-37 (39)
303 1vsy_5 Proteasome activator BL 23.5 15 0.00053 44.0 -0.3 32 532-563 843-875 (997)
304 2xpp_A IWS1, ECU08_0440; trans 23.4 3.4E+02 0.011 24.7 8.7 74 573-649 52-132 (145)
305 3k29_A Putative uncharacterize 23.3 4.6E+02 0.016 24.5 17.8 42 165-206 77-118 (169)
306 4gkw_A Spindle assembly abnorm 23.3 4.1E+02 0.014 23.8 17.3 32 201-232 46-77 (167)
307 1qsd_A Protein (beta-tubulin b 22.8 3.7E+02 0.013 23.1 10.8 67 170-250 15-81 (106)
308 1m1j_C Fibrinogen gamma chain; 22.8 4.5E+02 0.015 28.0 11.0 18 116-133 47-64 (409)
309 3d5a_X RF1, peptide chain rele 22.7 1E+02 0.0036 32.4 5.8 7 243-249 13-19 (354)
310 2xpp_A IWS1, ECU08_0440; trans 22.4 4E+02 0.014 24.2 9.1 79 520-610 49-135 (145)
311 1ik9_A DNA repair protein XRCC 22.3 4E+02 0.014 25.7 9.6 76 102-197 131-206 (213)
312 1vsy_4 Proteasome activator BL 22.2 3.9E+02 0.013 31.1 11.2 117 440-561 332-455 (799)
313 2v4h_A NF-kappa-B essential mo 22.1 3.8E+02 0.013 23.3 8.2 33 284-316 72-104 (110)
314 2yy0_A C-MYC-binding protein; 22.0 1.4E+02 0.0048 22.6 4.9 47 263-312 4-50 (53)
315 1elk_A Target of MYB1; superhe 20.8 2.7E+02 0.0094 25.3 7.8 70 491-560 54-129 (157)
No 1
>3nmw_A APC variant protein; ARMADIILO repeats domain, cell adhesion-cell cycle complex; 1.60A {Homo sapiens} PDB: 3nmx_A 3t7u_A 3au3_A 3qhe_A
Probab=99.96 E-value=9e-28 Score=258.23 Aligned_cols=254 Identities=20% Similarity=0.199 Sum_probs=218.0
Q ss_pred cccchhhh---hhcCchhHHHHHhCCCHHHHHHhhCC-----------CCHHHHHHHHHHHHHhhCCc-hhHHHHHHcCC
Q 006114 385 QKSNPSRE---LSGQRATIAKICDEVGLPKILQLLTS-----------EDPDVQIHAVKVVANLAAED-INQEKIVEEGG 449 (660)
Q Consensus 385 vr~~~~~~---laa~~~~~~~I~e~ggI~~LV~LL~s-----------~d~~vr~~Aa~aL~nLa~~~-en~~~Ive~Gg 449 (660)
..+.++++ ++.+..++..|++.||++.|+.+|.+ .++.++..|+++|.||+.+. .++..|...||
T Consensus 48 ~~~~A~~aL~nls~d~e~R~~i~~~G~l~~Lv~LL~~~~~~~~~~~~~~~~~~q~~Aa~aL~nLa~~~~~~k~~i~~~~G 127 (354)
T 3nmw_A 48 QICPAVCVLMKLSFDEEHRHAMNELGGLQAIAELLQVDCEMYGLTNDHYSITLRRYAGMALTNLTFGDVANKATLCSMKG 127 (354)
T ss_dssp THHHHHHHHHHHHTSHHHHHHHHHTTHHHHHHHHHHHHHHHHTTSCCHHHHHHHHHHHHHHHHHTSSCHHHHHHHHHCHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHcCCHHHHHHHHhcccccccccCCCCCHHHHHHHHHHHHHHHcCCHHHHHHHHHcCC
Confidence 33445555 78887888889999999999999952 24789999999999999954 57878877666
Q ss_pred -HHHHHHHHccCCCHHHHHHHHHHHHHhhcC--chhHHHHHhcCccHHHHHhhcCCCCHHHHHHHHHHHHHHhc-ChhHH
Q 006114 450 -LDALLLLLRTSQNTTILRVASGAIANLAMN--EMNQGLIMSRGGGQLLAKTASKTDDPQTLRMVAGALANLCG-NEKLH 525 (660)
Q Consensus 450 -I~~Lv~LL~~s~d~~v~~~Aa~AL~nLA~~--~~n~~~Ive~g~I~~Ll~LL~~s~d~~v~~~Aa~aLanLa~-~~~~r 525 (660)
||+|+.+|. ++++.++..|+++|+||+.+ +.++..|++.|+||+|+.+|..+.++.++..|+++|+||+. +++++
T Consensus 128 aIp~LV~LL~-s~~~~v~~~A~~aL~nLs~~~~~~~k~~i~~~G~Ip~Lv~lL~~~~~~~~~~~A~~aL~nLs~~~~~nk 206 (354)
T 3nmw_A 128 CMRALVAQLK-SESEDLQQVIASVLRNLSWRADVNSKKTLREVGSVKALMECALEVKKESTLKSVLSALWNLSAHCTENK 206 (354)
T ss_dssp HHHHHHHGGG-CSCHHHHHHHHHHHHHHHTTCCHHHHHHHHHTTHHHHHHHHHHHCCCHHHHHHHHHHHHHHHTTCHHHH
T ss_pred cHHHHHHHHC-CCCHHHHHHHHHHHHHHhccCCHHHHHHHHHCCCHHHHHHHHhcCCCHHHHHHHHHHHHHHHccChhhh
Confidence 999999998 78999999999999999985 67899999999999999986556789999999999999997 88888
Q ss_pred HHHH-hccHHHHHHHHhcCCCH----HHHHHHHHHHHHhhc---cchhhhhhcchhhhHHHhhcChHHHHHHhhcCCCHH
Q 006114 526 TMLE-EDGAIKALLAMVRSGNI----DVIAQVARGLANFAK---CESRAIVQGQRKGRSHLMEDSALEWLIANSKTNSAS 597 (660)
Q Consensus 526 ~~iv-~~G~V~~Lv~lL~s~~~----~v~~~Al~aLanLA~---~~~~~~aq~~~e~r~~Li~~G~v~~Lv~lL~s~d~~ 597 (660)
..++ ..|++|.|+.++.++++ .++..|+++|+||+. .+ ++++..+.+.|++|+|+.+|.+.+..
T Consensus 207 ~~i~~~~Gai~~Lv~lL~~~~~~~~~~v~~~A~~aL~nLs~~~a~~--------~~~~~~i~~~g~i~~Lv~lL~~~~~~ 278 (354)
T 3nmw_A 207 ADICAVDGALAFLVGTLTYRSQTNTLAIIESGGGILRNVSSLIATN--------EDHRQILRENNCLQTLLQHLKSHSLT 278 (354)
T ss_dssp HHHHHSTTHHHHHHHHTTCCCSSSCCHHHHHHHHHHHHHHHHHTTC--------HHHHHHHHTTTHHHHHHHHTTCSCHH
T ss_pred HHHHHhcCcHHHHHHHhccCCCcccHHHHHHHHHHHHHHHhhccCC--------HHHHHHHHHcCCHHHHHHHHcCCChH
Confidence 8888 78999999999987654 599999999999995 22 46788899999999999999999999
Q ss_pred HHHHHHHHHHHhhc-CCccHHHHHhcCcHHHHHHHHhcCChHHHHHHHHHHH
Q 006114 598 TRRHVELALCHLAQ-NEDNARDFISRGGAKELVQISIESSREDIRNLAKKTM 648 (660)
Q Consensus 598 vr~~Aa~AL~nLa~-~~e~~~~Ive~G~l~~Lv~lL~s~s~~~ir~~A~~~L 648 (660)
++..|+++|+||+. +++++..+++.|++|+|+.++.+++.. ++..|..+|
T Consensus 279 v~~~A~~aL~nLa~~~~~~~~~i~~~G~i~~Lv~LL~s~~~~-i~~~A~~aL 329 (354)
T 3nmw_A 279 IVSNACGTLWNLSARNPKDQEALWDMGAVSMLKNLIHSKHKM-IAMGSAAAL 329 (354)
T ss_dssp HHHHHHHHHHHHTSSCHHHHHHHHHTTHHHHHHTTTTCSSHH-HHHHHHHHH
T ss_pred HHHHHHHHHHHHhCCCHHHHHHHHHCCCHHHHHHHHhCCCHH-HHHHHHHHH
Confidence 99999999999995 568899999999999999999886654 455554444
No 2
>1xm9_A Plakophilin 1; armadillo repeat, cell adhesion; 2.80A {Homo sapiens} SCOP: a.118.1.24
Probab=99.95 E-value=8.7e-27 Score=258.05 Aligned_cols=273 Identities=18% Similarity=0.185 Sum_probs=222.0
Q ss_pred hhhhhhcccCCCccccccchhhh---hhcCchhHH-HHHhCCCHHHHHHhhCCCCHHHHHHHHHHHHHhhCC-chhHHHH
Q 006114 370 YISKGSSRFGAPMSLQKSNPSRE---LSGQRATIA-KICDEVGLPKILQLLTSEDPDVQIHAVKVVANLAAE-DINQEKI 444 (660)
Q Consensus 370 ~i~~l~~~L~~~~~~vr~~~~~~---laa~~~~~~-~I~e~ggI~~LV~LL~s~d~~vr~~Aa~aL~nLa~~-~en~~~I 444 (660)
.++.++..|.+..+.++..+... ++.+++..+ .++..|++|.|+.+|.++++.++..|+++|.||+.. ++++..|
T Consensus 3 ~l~~lv~~L~s~~~~~q~~A~~~L~~l~~~~~~~~~~i~~~g~i~~Lv~lL~s~~~~~~~~A~~aL~nLa~~~~~~k~~i 82 (457)
T 1xm9_A 3 TIPKAVQYLSSQDEKYQAIGAYYIQHTCFQDESAKQQVYQLGGICKLVDLLRSPNQNVQQAAAGALRNLVFRSTTNKLET 82 (457)
T ss_dssp CHHHHHHHHHSSCTHHHHHHHHHHHHHTSSCSSHHHHHHHTTHHHHHHHHTTSSCHHHHHHHHHHHHHHHSSCHHHHHHH
T ss_pred CHHHHHHHHCCCCHHHHHHHHHHHHHHHcCChHHHHHHHHcCCHHHHHHHHcCCCHHHHHHHHHHHHHHhcCCHHHHHHH
Confidence 35667777777777777766665 666666544 899999999999999999999999999999999995 9999999
Q ss_pred HHcCCHHHHHHHHccCCCHHHHHHHHHHHHHhhcCchhHHHHHhcCccHHHHHhhc--------CC-------CCHHHHH
Q 006114 445 VEEGGLDALLLLLRTSQNTTILRVASGAIANLAMNEMNQGLIMSRGGGQLLAKTAS--------KT-------DDPQTLR 509 (660)
Q Consensus 445 ve~GgI~~Lv~LL~~s~d~~v~~~Aa~AL~nLA~~~~n~~~Ive~g~I~~Ll~LL~--------~s-------~d~~v~~ 509 (660)
++.||||+|+.+|..++++.+++.|+++|+||+.+++++..|+. |+||+|+.++. ++ .++.+++
T Consensus 83 ~~~G~i~~Lv~lL~~~~~~~~~~~a~~aL~nLa~~~~~~~~i~~-g~i~~Lv~ll~~~~s~~~~~~~~~~~e~~~~~v~~ 161 (457)
T 1xm9_A 83 RRQNGIREAVSLLRRTGNAEIQKQLTGLLWNLSSTDELKEELIA-DALPVLADRVIIPFSGWCDGNSNMSREVVDPEVFF 161 (457)
T ss_dssp HHTTCHHHHHHHHTTCCCHHHHHHHHHHHHHHHTSSSTHHHHHH-HHHHHHHHHTTHHHHTCC---------CCCHHHHH
T ss_pred HHcCCHHHHHHHHhhCCCHHHHHHHHHHHHHHhcCHHhHHHHHh-ccHHHHHHHHhccccccccCccchhcccccHHHHH
Confidence 99999999999998567899999999999999999999999999 99999999993 11 3578888
Q ss_pred HHHHHHHHHhcChhHHHHHHhc-cHHHHHHHHhcC------C--------------------------------------
Q 006114 510 MVAGALANLCGNEKLHTMLEED-GAIKALLAMVRS------G-------------------------------------- 544 (660)
Q Consensus 510 ~Aa~aLanLa~~~~~r~~iv~~-G~V~~Lv~lL~s------~-------------------------------------- 544 (660)
.|+|+|+|||.+++++..+++. |+++.|+.++.+ .
T Consensus 162 ~a~~aL~nLs~~~~~~~~i~~~~g~i~~Lv~lL~~~~~~~~~~~~~~e~a~~~L~nLs~~~~~~~~~~~~~~~~~~~~~~ 241 (457)
T 1xm9_A 162 NATGCLRNLSSADAGRQTMRNYSGLIDSLMAYVQNCVAASRCDDKSVENCMCVLHNLSYRLDAEVPTRYRQLEYNARNAY 241 (457)
T ss_dssp HHHHHHHHHTTSHHHHHHHTTSTTHHHHHHHHHHHHHHHTCTTCTTHHHHHHHHHHHTTTHHHHSCCHHHHHHHTC----
T ss_pred HHHHHHHHHccCHHHHHHHHHcCCCHHHHHHHHHhhccccCCchHHHHHHHHHHHhcccchhccCcchhhhccccccccc
Confidence 9999999999889999999998 999999988763 1
Q ss_pred -------------------------------------------------------CHHHHHHHHHHHHHhhccchhhhhh
Q 006114 545 -------------------------------------------------------NIDVIAQVARGLANFAKCESRAIVQ 569 (660)
Q Consensus 545 -------------------------------------------------------~~~v~~~Al~aLanLA~~~~~~~aq 569 (660)
++.++..|+++|+|||.++....
T Consensus 242 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~~L~~lL~~~~~~~~~e~a~~aL~nl~~~~~~~~-- 319 (457)
T 1xm9_A 242 TEKSSTGCFSNKSDKMMNNNYDCPLPEEETNPKGSGWLYHSDAIRTYLNLMGKSKKDATLEACAGALQNLTASKGLMS-- 319 (457)
T ss_dssp ------------------------CCCCCSSCCGGGGGGSHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHTTCSSSHH--
T ss_pred ccccccchhhccchhhhhccccCCccccccCchHHHHHhCcchHHHHHHHHhhcCCHHHHHHHHHHHHHhccCcCcch--
Confidence 24455556777777776542110
Q ss_pred cchhh-hHHHhhcChHHHHHHhhcCCCHHHHHHHHHHHHHhhcCCccHHHHHhcCcHHHHHHHHhcCCh-----HHHHHH
Q 006114 570 GQRKG-RSHLMEDSALEWLIANSKTNSASTRRHVELALCHLAQNEDNARDFISRGGAKELVQISIESSR-----EDIRNL 643 (660)
Q Consensus 570 ~~~e~-r~~Li~~G~v~~Lv~lL~s~d~~vr~~Aa~AL~nLa~~~e~~~~Ive~G~l~~Lv~lL~s~s~-----~~ir~~ 643 (660)
... +..+.+.|++|.|+.+|.+++..++..|+|+|++|+.++.+...| ..|++++|+.++.++++ +.+...
T Consensus 320 --~~~~~~~v~~~~~l~~Lv~LL~~~~~~v~~~A~~aL~nls~~~~~~~~i-~~~~i~~Lv~lL~~~~~~~~~~~~v~~~ 396 (457)
T 1xm9_A 320 --SGMSQLIGLKEKGLPQIARLLQSGNSDVVRSGASLLSNMSRHPLLHRVM-GNQVFPEVTRLLTSHTGNTSNSEDILSS 396 (457)
T ss_dssp --HHHHHHHHTTSCCHHHHHHHTTCSCHHHHHHHHHHHHHHHTSGGGHHHH-HHHTHHHHHHTTTSCCSCSTTHHHHHHH
T ss_pred --HHHHHHHHHHcCCchHHHHHHhCCCHhHHHHHHHHHHHHhcCHHHHHHH-HHhhhHHHHHhccCCCCCCCCcHHHHHH
Confidence 112 445557899999999999999999999999999999988776555 45899999999998754 345545
Q ss_pred HHHHH
Q 006114 644 AKKTM 648 (660)
Q Consensus 644 A~~~L 648 (660)
+..+|
T Consensus 397 ~l~~l 401 (457)
T 1xm9_A 397 ACYTV 401 (457)
T ss_dssp HHHHH
T ss_pred HHHHH
Confidence 55444
No 3
>3nmz_A APC variant protein; protein-protein complex, armadillo repeats, cell adhesion-CE complex; 3.01A {Homo sapiens}
Probab=99.95 E-value=1e-26 Score=257.80 Aligned_cols=252 Identities=20% Similarity=0.200 Sum_probs=216.1
Q ss_pred cchhhh---hhcCchhHHHHHhCCCHHHHHHhhCC-----------CCHHHHHHHHHHHHHhhCCc-hhHHHHHHcCC-H
Q 006114 387 SNPSRE---LSGQRATIAKICDEVGLPKILQLLTS-----------EDPDVQIHAVKVVANLAAED-INQEKIVEEGG-L 450 (660)
Q Consensus 387 ~~~~~~---laa~~~~~~~I~e~ggI~~LV~LL~s-----------~d~~vr~~Aa~aL~nLa~~~-en~~~Ive~Gg-I 450 (660)
+.++++ ++.+..++..|++.|++++|+.+|.+ .++.++..|+++|.||+.++ .++..|...+| |
T Consensus 166 ~qAv~aL~nls~~~e~R~~i~~~G~l~~Lv~LL~~~~~~~~~~~~~~~~~l~~~Aa~aL~nLa~~~~~~k~~i~~~~GaI 245 (458)
T 3nmz_A 166 CPAVCVLMKLSFDEEHRHAMNELGGLQAIAELLQVDCEMYGLTNDHYSITLRRYAGMALTNLTFGDVANKATLCSMKGCM 245 (458)
T ss_dssp HHHHHHHHHHTTSHHHHHHHHHTTHHHHHHHHHHHHHHHSTTCCCHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHCHHHH
T ss_pred HHHHHHHHHhcCCHHHHHHHHHCCCHHHHHHHHhhhhcccccccCCCCHHHHHHHHHHHHHHhCCCcccHHHHHHcCCcH
Confidence 345555 67777788889999999999999942 34679999999999999955 46777766666 9
Q ss_pred HHHHHHHccCCCHHHHHHHHHHHHHhhcC--chhHHHHHhcCccHHHHHhhcCCCCHHHHHHHHHHHHHHhc-ChhHHHH
Q 006114 451 DALLLLLRTSQNTTILRVASGAIANLAMN--EMNQGLIMSRGGGQLLAKTASKTDDPQTLRMVAGALANLCG-NEKLHTM 527 (660)
Q Consensus 451 ~~Lv~LL~~s~d~~v~~~Aa~AL~nLA~~--~~n~~~Ive~g~I~~Ll~LL~~s~d~~v~~~Aa~aLanLa~-~~~~r~~ 527 (660)
|+|+.+|. ++++.++..|+++|+||+.+ +.++..|++.|+||+|+.+|..+.++.++..|+++|+||+. +++++..
T Consensus 246 p~LV~LL~-s~~~~v~~~A~~aL~nLs~~~~~~~k~~I~~~GaI~~LV~lLl~s~~~~v~~~A~~aL~nLs~~~~~nk~~ 324 (458)
T 3nmz_A 246 RALVAQLK-SESEDLQQVIASVLRNLSWRADVNSKKTLREVGSVKALMECALEVKKESTLKSVLSALWNLSAHCTENKAD 324 (458)
T ss_dssp HHHHHGGG-CSCHHHHHHHHHHHHHHTSSCCHHHHHHHHHTTHHHHHHHHHTTCCSHHHHHHHHHHHHHHHHHCHHHHHH
T ss_pred HHHHHHHh-CCCHHHHHHHHHHHHHHhcCCCHHHHHHHHHcCCHHHHHHHHhcCCCHHHHHHHHHHHHHHccCCHHHHHH
Confidence 99999998 78999999999999999985 67899999999999999987666789999999999999996 8889999
Q ss_pred HH-hccHHHHHHHHhcCCCH----HHHHHHHHHHHHhhc---cchhhhhhcchhhhHHHhhcChHHHHHHhhcCCCHHHH
Q 006114 528 LE-EDGAIKALLAMVRSGNI----DVIAQVARGLANFAK---CESRAIVQGQRKGRSHLMEDSALEWLIANSKTNSASTR 599 (660)
Q Consensus 528 iv-~~G~V~~Lv~lL~s~~~----~v~~~Al~aLanLA~---~~~~~~aq~~~e~r~~Li~~G~v~~Lv~lL~s~d~~vr 599 (660)
|+ ..|++|.|+.++.++++ .++..|+++|+||+. .+ +.++..+++.|++|+|+.+|.+.+..++
T Consensus 325 I~~~~Gal~~Lv~LL~~~~~~~~~~v~~~A~~aL~nLs~~~a~~--------~~~~~~i~~~G~i~~Lv~LL~~~~~~v~ 396 (458)
T 3nmz_A 325 ICAVDGALAFLVGTLTYRSQTNTLAIIESGGGILRNVSSLIATN--------EDHRQILRENNCLQTLLQHLKSHSLTIV 396 (458)
T ss_dssp HHHSTTHHHHHHHHTTCCCSSSTTHHHHHHHHHHHHHHHHHTTC--------HHHHHHHHHTTHHHHHHHHSSCSCHHHH
T ss_pred HHHhcCcHHHHHHHhcCCCCcchHHHHHHHHHHHHHHHhcccCC--------HHHHHHHHHcccHHHHHHHHcCCChHHH
Confidence 98 78999999999987654 599999999999995 32 4677889999999999999999999999
Q ss_pred HHHHHHHHHhhc-CCccHHHHHhcCcHHHHHHHHhcCChHHHHHHHHHHH
Q 006114 600 RHVELALCHLAQ-NEDNARDFISRGGAKELVQISIESSREDIRNLAKKTM 648 (660)
Q Consensus 600 ~~Aa~AL~nLa~-~~e~~~~Ive~G~l~~Lv~lL~s~s~~~ir~~A~~~L 648 (660)
..|+|+|+||+. +++++..|++.|++++|+.++.+++.. ++..|..+|
T Consensus 397 ~~A~~aL~nLa~~~~~~~~~i~~~G~I~~Lv~LL~s~~~~-v~~~Aa~AL 445 (458)
T 3nmz_A 397 SNACGTLWNLSARNPKDQEALWDMGAVSMLKNLIHSKHKM-IAMGSAAAL 445 (458)
T ss_dssp HHHHHHHHHHHSSCHHHHHHHHHHTHHHHHHTTTTCSSHH-HHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHCCCHHHHHHHHhCCCHH-HHHHHHHHH
Confidence 999999999995 668899999999999999999876654 445554333
No 4
>4hxt_A De novo protein OR329; structural genomics, PSI-biology, protein structure initiati northeast structural genomics consortium, NESG; 1.95A {Artificial gene}
Probab=99.94 E-value=2.5e-25 Score=221.88 Aligned_cols=233 Identities=23% Similarity=0.400 Sum_probs=211.7
Q ss_pred CCHHHHHHhhCCCCHHHHHHHHHHHHHhhCC-chhHHHHHHcCCHHHHHHHHccCCCHHHHHHHHHHHHHhhcC-chhHH
Q 006114 407 VGLPKILQLLTSEDPDVQIHAVKVVANLAAE-DINQEKIVEEGGLDALLLLLRTSQNTTILRVASGAIANLAMN-EMNQG 484 (660)
Q Consensus 407 ggI~~LV~LL~s~d~~vr~~Aa~aL~nLa~~-~en~~~Ive~GgI~~Lv~LL~~s~d~~v~~~Aa~AL~nLA~~-~~n~~ 484 (660)
|++|.|+.+|.++++.++..|+++|.+++.. ++++..+++.|+++.|+.+|. ++++.++..|+++|++|+.+ +.++.
T Consensus 2 ~~i~~L~~~L~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~L~~ll~-~~~~~v~~~a~~~L~~l~~~~~~~~~ 80 (252)
T 4hxt_A 2 NDVEKLVKLLTSTDSETQKEAARDLAEIASGPASAIKAIVDAGGVEVLVKLLT-STDSEVQKEAARALANIASGPDEAIK 80 (252)
T ss_dssp CHHHHHHHHTTCSCHHHHHHHHHHHHHHHTSCHHHHHHHHHTTHHHHHHHHTT-CSCHHHHHHHHHHHHHHTTSCHHHHH
T ss_pred CcHHHHHHHHcCCCHHHHHHHHHHHHHHhcCCcHHHHHHHHCCCHHHHHHHHh-CCCHHHHHHHHHHHHHHHcCChHHHH
Confidence 6799999999999999999999999999984 568999999999999999998 67899999999999999988 99999
Q ss_pred HHHhcCccHHHHHhhcCCCCHHHHHHHHHHHHHHh-cChhHHHHHHhccHHHHHHHHhcCCCHHHHHHHHHHHHHhhccc
Q 006114 485 LIMSRGGGQLLAKTASKTDDPQTLRMVAGALANLC-GNEKLHTMLEEDGAIKALLAMVRSGNIDVIAQVARGLANFAKCE 563 (660)
Q Consensus 485 ~Ive~g~I~~Ll~LL~~s~d~~v~~~Aa~aLanLa-~~~~~r~~iv~~G~V~~Lv~lL~s~~~~v~~~Al~aLanLA~~~ 563 (660)
.++..|+++.|+.++.+ +++.++..|+++|++|+ .++..+..+++.|+++.|+.++.++++.++..|+++|++|+.++
T Consensus 81 ~~~~~~~i~~l~~ll~~-~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~~l~~~~~~~~~~a~~~L~~l~~~~ 159 (252)
T 4hxt_A 81 AIVDAGGVEVLVKLLTS-TDSEVQKEAARALANIASGPDEAIKAIVDAGGVEVLVKLLTSTDSEVQKEAARALANIASGP 159 (252)
T ss_dssp HHHHTTHHHHHHHHTTC-SSHHHHHHHHHHHHHHTTSCHHHHHHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHTTSC
T ss_pred HHHHCCCHHHHHHHHcC-CCHHHHHHHHHHHHHHHcCCHHHHHHHHHCCCHHHHHHHHcCCCHHHHHHHHHHHHHHHcCC
Confidence 99999999999999975 78999999999999999 88999999999999999999999999999999999999999764
Q ss_pred hhhhhhcchhhhHHHhhcChHHHHHHhhcCCCHHHHHHHHHHHHHhhcCC-ccHHHHHhcCcHHHHHHHHhcCChHHHHH
Q 006114 564 SRAIVQGQRKGRSHLMEDSALEWLIANSKTNSASTRRHVELALCHLAQNE-DNARDFISRGGAKELVQISIESSREDIRN 642 (660)
Q Consensus 564 ~~~~aq~~~e~r~~Li~~G~v~~Lv~lL~s~d~~vr~~Aa~AL~nLa~~~-e~~~~Ive~G~l~~Lv~lL~s~s~~~ir~ 642 (660)
+ ..+..+...|+++.|+.++.+.++.++..|+++|++|+.++ .....+++.|+++.|+.++.+++. .++.
T Consensus 160 ~--------~~~~~~~~~~~i~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~l~~~~~i~~L~~ll~~~~~-~v~~ 230 (252)
T 4hxt_A 160 D--------EAIKAIVDAGGVEVLVKLLTSTDSEVQKEAARALANIASGPTSAIKAIVDAGGVEVLQKLLTSTDS-EVQK 230 (252)
T ss_dssp H--------HHHHHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHTTSBHHHHHHHHHTTHHHHHHHGGGCSCH-HHHH
T ss_pred H--------HHHHHHHHCcCHHHHHHHHCCCCHHHHHHHHHHHHHHHcCCHHHHHHHHHCCCHHHHHHHHCCCcH-HHHH
Confidence 3 34567888999999999999999999999999999999854 677888899999999999987654 6777
Q ss_pred HHHHHHhc
Q 006114 643 LAKKTMKS 650 (660)
Q Consensus 643 ~A~~~L~~ 650 (660)
.|..+|.+
T Consensus 231 ~a~~~L~~ 238 (252)
T 4hxt_A 231 EAQRALEN 238 (252)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHH
Confidence 77766643
No 5
>3ul1_B Importin subunit alpha-2; arm repeat, armadillo repeat, nuclear transport, nuclear LOC signal binding, importin beta binding; 1.90A {Mus musculus} PDB: 3ukx_B 3uky_B 3ukz_B 3ukw_B 3ul0_B 3oqs_A 3rz9_A 3rzx_A 3uvu_A 1q1s_C 1q1t_C 3knd_A 1ejy_I 1iq1_C 1ejl_I 1pjn_B 1pjm_B 3q5u_A 3fey_C 3fex_C ...
Probab=99.94 E-value=1.1e-25 Score=252.20 Aligned_cols=271 Identities=15% Similarity=0.239 Sum_probs=226.0
Q ss_pred cchhhhhhcccCCCccccccchhhh----hh-cCchhHHHHHhCCCHHHHHHhhC-CCCHHHHHHHHHHHHHhhC-Cchh
Q 006114 368 KDYISKGSSRFGAPMSLQKSNPSRE----LS-GQRATIAKICDEVGLPKILQLLT-SEDPDVQIHAVKVVANLAA-EDIN 440 (660)
Q Consensus 368 ~g~i~~l~~~L~~~~~~vr~~~~~~----la-a~~~~~~~I~e~ggI~~LV~LL~-s~d~~vr~~Aa~aL~nLa~-~~en 440 (660)
...++.++.++.+.+...+..+... ++ ..++.+..+++.|+||+||.+|. ++++.+|..|+|+|+||+. ++++
T Consensus 56 ~~~i~~~v~~l~s~d~~~q~~a~~~~rklls~e~~ppi~~ii~~G~ip~LV~lL~~~~~~~lq~~Aa~aL~nias~~~e~ 135 (510)
T 3ul1_B 56 NWSVEDIVKGINSNNLESQLQATQAARKLLSREKQPPIDNIIRAGLIPKFVSFLGKTDCSPIQFESAWALTNIASGTSEQ 135 (510)
T ss_dssp SCCHHHHHHHHTSSCHHHHHHHHHHHHHHHTCSSCCCHHHHHHTTHHHHHHHHTTCTTCHHHHHHHHHHHHHHHTSCHHH
T ss_pred hhhHHHHHHHhcCCCHHHHHHHHHHHHHHhcCCCCchHHHHHHCCCHHHHHHHHCCCCCHHHHHHHHHHHHHHhcCCHHH
Confidence 3468888888888777666554433 33 35678999999999999999997 5568999999999999988 7888
Q ss_pred HHHHHHcCCHHHHHHHHccCCCHHHHHHHHHHHHHhhcC-chhHHHHHhcCccHHHHHhhcC------------------
Q 006114 441 QEKIVEEGGLDALLLLLRTSQNTTILRVASGAIANLAMN-EMNQGLIMSRGGGQLLAKTASK------------------ 501 (660)
Q Consensus 441 ~~~Ive~GgI~~Lv~LL~~s~d~~v~~~Aa~AL~nLA~~-~~n~~~Ive~g~I~~Ll~LL~~------------------ 501 (660)
+..|++.|+||.|+.+|. ++++.++..|+++|+|||.+ +.++..++..|++++|+.++..
T Consensus 136 ~~~vv~~GaIp~Lv~lL~-s~~~~v~e~A~~aL~nLa~d~~~~r~~v~~~G~i~~Ll~lL~~~~~~~~~~~~~~~a~~~L 214 (510)
T 3ul1_B 136 TKAVVDGGAIPAFISLLA-SPHAHISEQAVWALGNIAGDGSAFRDLVIKHGAIDPLLALLAVPDLSTLACGYLRNLTWTL 214 (510)
T ss_dssp HHHHHHTTHHHHHHHHTT-CSCHHHHHHHHHHHHHHHTTCHHHHHHHHHTTCHHHHHHHTCSSCGGGSCHHHHHHHHHHH
T ss_pred HHHHHHCCCHHHHHHHHc-CCCHHHHHHHHHHHHHHHhCCHHHHHHHHHcCChHHHHHHHHhccchhhhHHHHHHHHHHH
Confidence 999999999999999997 78999999999999999987 7788888888888888776642
Q ss_pred ----------------------------CCCHHHHHHHHHHHHHHhcC-hhHHHHHHhccHHHHHHHHhcCCCHHHHHHH
Q 006114 502 ----------------------------TDDPQTLRMVAGALANLCGN-EKLHTMLEEDGAIKALLAMVRSGNIDVIAQV 552 (660)
Q Consensus 502 ----------------------------s~d~~v~~~Aa~aLanLa~~-~~~r~~iv~~G~V~~Lv~lL~s~~~~v~~~A 552 (660)
++++.++..|+|+|++|+.. +.....++..|+++.|+.++.++++.++..|
T Consensus 215 ~nl~~~~~~~~~~~~~~~~lp~L~~LL~~~~~~v~~~A~~aL~~L~~~~~~~~~~i~~~g~i~~Lv~lL~~~~~~v~~~a 294 (510)
T 3ul1_B 215 SNLCRNKNPAPPLDAVEQILPTLVRLLHHNDPEVLADSCWAISYLTDGPNERIEMVVKKGVVPQLVKLLGATELPIVTPA 294 (510)
T ss_dssp HHHHCCCSSCCCHHHHHHHHHHHHHHTTCSCHHHHHHHHHHHHHHTSSCHHHHHHHHTTTCHHHHHHHHTCSCHHHHHHH
T ss_pred HHHhhcccchhHHHHHHhHHHHHHHHHhcCCHHHHHHHHHHHHHHhhchhhhHHHHHhcccchhhhhhhcCCChhhhhHH
Confidence 23556677888888888854 4455667788999999999999999999999
Q ss_pred HHHHHHhhccchhhhhhcchhhhHHHhhcChHHHHHHhhcCCCHHHHHHHHHHHHHhhcCC-ccHHHHHhcCcHHHHHHH
Q 006114 553 ARGLANFAKCESRAIVQGQRKGRSHLMEDSALEWLIANSKTNSASTRRHVELALCHLAQNE-DNARDFISRGGAKELVQI 631 (660)
Q Consensus 553 l~aLanLA~~~~~~~aq~~~e~r~~Li~~G~v~~Lv~lL~s~d~~vr~~Aa~AL~nLa~~~-e~~~~Ive~G~l~~Lv~l 631 (660)
+++|+||+.+++ ..+..+++.|+++.|+.++.+.++.++..|+|+|+||+.++ .....++..|++|.|+.+
T Consensus 295 l~aL~nl~~~~~--------~~~~~i~~~g~l~~L~~LL~~~~~~v~~~A~~aL~nl~a~~~~~~~~v~~~g~i~~Lv~l 366 (510)
T 3ul1_B 295 LRAIGNIVTGTD--------EQTQKVIDAGALAVFPSLLTNPKTNIQKEATWTMSNITAGRQDQIQQVVNHGLVPFLVGV 366 (510)
T ss_dssp HHHHHHHTTSCH--------HHHHHHHHTTGGGGCC-CTTCSSHHHHHHHHHHHHHHTTSCHHHHHHHHHTTHHHHHHHH
T ss_pred HHHHHHhhcCCH--------HHHHHHhhccchHHHHHHhcCCCHHHHHHHHHHHHHHHcCcHHHHHHHHhcCCHHHHHHH
Confidence 999999997653 45567889999999999999999999999999999998766 667888899999999999
Q ss_pred HhcCChHHHHHHHHHHH
Q 006114 632 SIESSREDIRNLAKKTM 648 (660)
Q Consensus 632 L~s~s~~~ir~~A~~~L 648 (660)
+.+++....+. |..+|
T Consensus 367 L~~~~~~v~~~-Aa~aL 382 (510)
T 3ul1_B 367 LSKADFKTQKE-AAWAI 382 (510)
T ss_dssp HHSSCHHHHHH-HHHHH
T ss_pred HcCCCHHHHHH-HHHHH
Confidence 99877655444 44444
No 6
>3l6x_A Catenin delta-1; catenin, armadillo, ARM, JMD, CE adhesion, complex, cell-CELL adhesion, ARVCF, delta-catenin DP120, JAC-1, cell membrane, membrane; 2.40A {Homo sapiens} PDB: 3l6y_A
Probab=99.94 E-value=2.7e-25 Score=252.30 Aligned_cols=290 Identities=17% Similarity=0.224 Sum_probs=234.6
Q ss_pred cccchhhhhhcccCCCccccccchhhh---hhc-CchhHHHHHhCCCHHHHHHhhCCCCHHHHHHHHHHHHHhhC--Cch
Q 006114 366 YTKDYISKGSSRFGAPMSLQKSNPSRE---LSG-QRATIAKICDEVGLPKILQLLTSEDPDVQIHAVKVVANLAA--EDI 439 (660)
Q Consensus 366 ~~~g~i~~l~~~L~~~~~~vr~~~~~~---laa-~~~~~~~I~e~ggI~~LV~LL~s~d~~vr~~Aa~aL~nLa~--~~e 439 (660)
...+.++.++..|.+....++..++.. ++. ...+...|++.|+||.||.+|.+++..++..|+++|.||+. +++
T Consensus 45 ~~~~~i~~LV~~L~s~~~~~q~~Aa~~L~~La~~~~~~k~~V~~~G~Ip~LV~LL~s~~~~vq~~Aa~AL~nLa~~~~~~ 124 (584)
T 3l6x_A 45 WRQPELPEVIAMLGFRLDAVKSNAAAYLQHLCYRNDKVKTDVRKLKGIPVLVGLLDHPKKEVHLGACGALKNISFGRDQD 124 (584)
T ss_dssp CCCCCHHHHHHHTTCSCHHHHHHHHHHHHHHHTTCHHHHHHHHHTTHHHHHHHGGGCSSHHHHHHHHHHHHHHTSSSCHH
T ss_pred cccccHHHHHHHHCCCCHHHHHHHHHHHHHHHcCChHHHHHHHHcCCcHHHHHHHCCCCHHHHHHHHHHHHHHHccCCHH
Confidence 567889999999998888787776665 665 56677789999999999999999999999999999999998 489
Q ss_pred hHHHHHHcCCHHHHHHHHccCCCHHHHHHHHHHHHHhhcCchhHHHHHhcCccHHHHHhhc-----------------CC
Q 006114 440 NQEKIVEEGGLDALLLLLRTSQNTTILRVASGAIANLAMNEMNQGLIMSRGGGQLLAKTAS-----------------KT 502 (660)
Q Consensus 440 n~~~Ive~GgI~~Lv~LL~~s~d~~v~~~Aa~AL~nLA~~~~n~~~Ive~g~I~~Ll~LL~-----------------~s 502 (660)
++..|++.||||+|+.+|.++.+..+++.|+++|+||+.++.++..|+. ++||+|+.++. ++
T Consensus 125 nk~~I~~~GaIp~LV~LL~s~~~~~~~e~aa~aL~nLS~~~~~k~~I~~-~alp~Lv~LL~~p~sg~~~~~~~~~k~~~~ 203 (584)
T 3l6x_A 125 NKIAIKNCDGVPALVRLLRKARDMDLTEVITGTLWNLSSHDSIKMEIVD-HALHALTDEVIIPHSGWEREPNEDCKPRHI 203 (584)
T ss_dssp HHHHHHHTTHHHHHHHHHHHCCSHHHHHHHHHHHHHHTTSGGGHHHHHH-HTHHHHHHHTHHHHHCCC----------CC
T ss_pred HHHHHHHcCCHHHHHHHHcCCCCHHHHHHHHHHHHHHhCCchhhHHHHh-ccHHHHHHHHhccccccccccccccccccc
Confidence 9999999999999999998667889999999999999999999999995 57999999761 23
Q ss_pred CCHHHHHHHHHHHHHHhcC-hhHHHHHHhc-cHHHHHHHHhcC------CCHHHHHHHHHHHHHhhccchhhhh------
Q 006114 503 DDPQTLRMVAGALANLCGN-EKLHTMLEED-GAIKALLAMVRS------GNIDVIAQVARGLANFAKCESRAIV------ 568 (660)
Q Consensus 503 ~d~~v~~~Aa~aLanLa~~-~~~r~~iv~~-G~V~~Lv~lL~s------~~~~v~~~Al~aLanLA~~~~~~~a------ 568 (660)
.++.++.+|+++|+||+.+ +.++..|++. |+++.|+.++++ .+..+..+|+++|+||+.+......
T Consensus 204 ~d~~V~~nAa~~L~NLs~~~~~~R~~i~~~~Gli~~LV~~L~~~~~~~~~~~~~~enav~aL~NLs~~~~~e~~~~~~~~ 283 (584)
T 3l6x_A 204 EWESVLTNTAGCLRNVSSERSEARRKLRECDGLVDALIFIVQAEIGQKDSDSKLVENCVCLLRNLSYQVHREIPQAERYQ 283 (584)
T ss_dssp CCHHHHHHHHHHHHHHTSSCHHHHHHHHHSTTHHHHHHHHHHHHHHTTCCSCHHHHHHHHHHHHHHTTHHHHSTTCCC--
T ss_pred ccHHHHHHHHHHHHHHhcCCHHHHHHHHHcCCcHHHHHHHHHHhhcccCccHHHHHHHHHHHHHhhccccccccchhhhh
Confidence 4689999999999999954 5679999985 667899999974 4667899999999999976321110
Q ss_pred -----------hcchhhhHHHhhcChHHHHHHhhc-CCCHHHHHHHHHHHHHhhcCC-----ccHHHHHhcCcHHHHHHH
Q 006114 569 -----------QGQRKGRSHLMEDSALEWLIANSK-TNSASTRRHVELALCHLAQNE-----DNARDFISRGGAKELVQI 631 (660)
Q Consensus 569 -----------q~~~e~r~~Li~~G~v~~Lv~lL~-s~d~~vr~~Aa~AL~nLa~~~-----e~~~~Ive~G~l~~Lv~l 631 (660)
...+.|...+...++++.|+.++. +.++.++++|++||+|||... .....+.+.|++|.|+.+
T Consensus 284 ~~~~~~~~~~~~~~~~Gve~L~~~~~v~~Ll~LL~~s~~~~v~E~Aa~AL~nL~ag~~~~~~~~~~~v~~~~glp~Lv~L 363 (584)
T 3l6x_A 284 EAAPNVANNTGTSPARGYELLFQPEVVRIYISLLKESKTPAILEASAGAIQNLCAGRWTYGRYIRSALRQEKALSAIADL 363 (584)
T ss_dssp ------------CCCCGGGGGGSHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHSSCSHHHHHHHHHHTSHHHHHHHHHG
T ss_pred hhcccccccccccCchhHHHHhcccHHHHHHHHHccCCCHHHHHHHHHHHHHHHcCCccccHHHHHHHHHcCcHHHHHHH
Confidence 012345566677788899999996 457999999999999998653 122344468999999999
Q ss_pred HhcCChHHHHHHHH--HHHhcCcchhh
Q 006114 632 SIESSREDIRNLAK--KTMKSNPRLQA 656 (660)
Q Consensus 632 L~s~s~~~ir~~A~--~~L~~~p~~~~ 656 (660)
+.+++.+..+.++. +-|..++..+.
T Consensus 364 L~s~~~~v~~~A~~aL~nLs~~~~~~~ 390 (584)
T 3l6x_A 364 LTNEHERVVKAASGALRNLAVDARNKE 390 (584)
T ss_dssp GGCSCHHHHHHHHHHHHHHHTTCSCHH
T ss_pred HcCCCHHHHHHHHHHHHHHhCChhHHH
Confidence 99888766555554 44555555443
No 7
>3nmw_A APC variant protein; ARMADIILO repeats domain, cell adhesion-cell cycle complex; 1.60A {Homo sapiens} PDB: 3nmx_A 3t7u_A 3au3_A 3qhe_A
Probab=99.94 E-value=1.1e-25 Score=241.94 Aligned_cols=239 Identities=18% Similarity=0.200 Sum_probs=202.2
Q ss_pred cchhhhhhcccCC-----------Cccccccchhhh---hhcCchhHHH-HHhCCC-HHHHHHhhCCCCHHHHHHHHHHH
Q 006114 368 KDYISKGSSRFGA-----------PMSLQKSNPSRE---LSGQRATIAK-ICDEVG-LPKILQLLTSEDPDVQIHAVKVV 431 (660)
Q Consensus 368 ~g~i~~l~~~L~~-----------~~~~vr~~~~~~---laa~~~~~~~-I~e~gg-I~~LV~LL~s~d~~vr~~Aa~aL 431 (660)
.|+++.++..+.. ..+.++..+.++ ++..++..+. +...+| ||.|+.+|.++++.++..|+++|
T Consensus 72 ~G~l~~Lv~LL~~~~~~~~~~~~~~~~~~q~~Aa~aL~nLa~~~~~~k~~i~~~~GaIp~LV~LL~s~~~~v~~~A~~aL 151 (354)
T 3nmw_A 72 LGGLQAIAELLQVDCEMYGLTNDHYSITLRRYAGMALTNLTFGDVANKATLCSMKGCMRALVAQLKSESEDLQQVIASVL 151 (354)
T ss_dssp TTHHHHHHHHHHHHHHHHTTSCCHHHHHHHHHHHHHHHHHTSSCHHHHHHHHHCHHHHHHHHHGGGCSCHHHHHHHHHHH
T ss_pred cCCHHHHHHHHhcccccccccCCCCCHHHHHHHHHHHHHHHcCCHHHHHHHHHcCCcHHHHHHHHCCCCHHHHHHHHHHH
Confidence 3666666666531 122345455555 6766664444 545555 99999999999999999999999
Q ss_pred HHhhCC--chhHHHHHHcCCHHHHHHHHccCCCHHHHHHHHHHHHHhhc-CchhHHHHH-hcCccHHHHHhhcCCCCH--
Q 006114 432 ANLAAE--DINQEKIVEEGGLDALLLLLRTSQNTTILRVASGAIANLAM-NEMNQGLIM-SRGGGQLLAKTASKTDDP-- 505 (660)
Q Consensus 432 ~nLa~~--~en~~~Ive~GgI~~Lv~LL~~s~d~~v~~~Aa~AL~nLA~-~~~n~~~Iv-e~g~I~~Ll~LL~~s~d~-- 505 (660)
.||+.. +.++..|++.||||+|+.+|..+.++.+++.|+++|+||+. +++++..|+ ..|+||.|+.+|.+..+.
T Consensus 152 ~nLs~~~~~~~k~~i~~~G~Ip~Lv~lL~~~~~~~~~~~A~~aL~nLs~~~~~nk~~i~~~~Gai~~Lv~lL~~~~~~~~ 231 (354)
T 3nmw_A 152 RNLSWRADVNSKKTLREVGSVKALMECALEVKKESTLKSVLSALWNLSAHCTENKADICAVDGALAFLVGTLTYRSQTNT 231 (354)
T ss_dssp HHHHTTCCHHHHHHHHHTTHHHHHHHHHHHCCCHHHHHHHHHHHHHHHTTCHHHHHHHHHSTTHHHHHHHHTTCCCSSSC
T ss_pred HHHhccCCHHHHHHHHHCCCHHHHHHHHhcCCCHHHHHHHHHHHHHHHccChhhhHHHHHhcCcHHHHHHHhccCCCccc
Confidence 999984 67899999999999999987557789999999999999999 678898888 799999999999754332
Q ss_pred -HHHHHHHHHHHHHhc----ChhHHHHHHhccHHHHHHHHhcCCCHHHHHHHHHHHHHhhccchhhhhhcchhhhHHHhh
Q 006114 506 -QTLRMVAGALANLCG----NEKLHTMLEEDGAIKALLAMVRSGNIDVIAQVARGLANFAKCESRAIVQGQRKGRSHLME 580 (660)
Q Consensus 506 -~v~~~Aa~aLanLa~----~~~~r~~iv~~G~V~~Lv~lL~s~~~~v~~~Al~aLanLA~~~~~~~aq~~~e~r~~Li~ 580 (660)
.++..|+|+|+||+. +++++..+++.|+++.|+.+|.+++..++..|+++|+||+..+ ++.+..+++
T Consensus 232 ~~v~~~A~~aL~nLs~~~a~~~~~~~~i~~~g~i~~Lv~lL~~~~~~v~~~A~~aL~nLa~~~--------~~~~~~i~~ 303 (354)
T 3nmw_A 232 LAIIESGGGILRNVSSLIATNEDHRQILRENNCLQTLLQHLKSHSLTIVSNACGTLWNLSARN--------PKDQEALWD 303 (354)
T ss_dssp CHHHHHHHHHHHHHHHHHTTCHHHHHHHHTTTHHHHHHHHTTCSCHHHHHHHHHHHHHHTSSC--------HHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhhccCCHHHHHHHHHcCCHHHHHHHHcCCChHHHHHHHHHHHHHhCCC--------HHHHHHHHH
Confidence 589999999999994 8999999999999999999999999999999999999999654 456778999
Q ss_pred cChHHHHHHhhcCCCHHHHHHHHHHHHHhhcCCc
Q 006114 581 DSALEWLIANSKTNSASTRRHVELALCHLAQNED 614 (660)
Q Consensus 581 ~G~v~~Lv~lL~s~d~~vr~~Aa~AL~nLa~~~e 614 (660)
.|++|+|+.++.+.++.++..|++||.+|+.+..
T Consensus 304 ~G~i~~Lv~LL~s~~~~i~~~A~~aL~nL~~~~~ 337 (354)
T 3nmw_A 304 MGAVSMLKNLIHSKHKMIAMGSAAALRNLMANRP 337 (354)
T ss_dssp TTHHHHHHTTTTCSSHHHHHHHHHHHHHHHTTCC
T ss_pred CCCHHHHHHHHhCCCHHHHHHHHHHHHHHHcCCH
Confidence 9999999999999999999999999999998653
No 8
>4hxt_A De novo protein OR329; structural genomics, PSI-biology, protein structure initiati northeast structural genomics consortium, NESG; 1.95A {Artificial gene}
Probab=99.93 E-value=1.3e-24 Score=216.76 Aligned_cols=235 Identities=25% Similarity=0.363 Sum_probs=211.7
Q ss_pred chhhhhhcccCCCccccccchhhh---hhcCch-hHHHHHhCCCHHHHHHhhCCCCHHHHHHHHHHHHHhhCC-chhHHH
Q 006114 369 DYISKGSSRFGAPMSLQKSNPSRE---LSGQRA-TIAKICDEVGLPKILQLLTSEDPDVQIHAVKVVANLAAE-DINQEK 443 (660)
Q Consensus 369 g~i~~l~~~L~~~~~~vr~~~~~~---laa~~~-~~~~I~e~ggI~~LV~LL~s~d~~vr~~Aa~aL~nLa~~-~en~~~ 443 (660)
++++.++..+.+..+.++..+.+. ++...+ ....+++.|++|.|+.+|.+++..++..|+++|++|+.+ +.++..
T Consensus 2 ~~i~~L~~~L~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~ 81 (252)
T 4hxt_A 2 NDVEKLVKLLTSTDSETQKEAARDLAEIASGPASAIKAIVDAGGVEVLVKLLTSTDSEVQKEAARALANIASGPDEAIKA 81 (252)
T ss_dssp CHHHHHHHHTTCSCHHHHHHHHHHHHHHHTSCHHHHHHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHTTSCHHHHHH
T ss_pred CcHHHHHHHHcCCCHHHHHHHHHHHHHHhcCCcHHHHHHHHCCCHHHHHHHHhCCCHHHHHHHHHHHHHHHcCChHHHHH
Confidence 467888888888877777777666 555554 777888999999999999999999999999999999996 889999
Q ss_pred HHHcCCHHHHHHHHccCCCHHHHHHHHHHHHHhh-cCchhHHHHHhcCccHHHHHhhcCCCCHHHHHHHHHHHHHHhc-C
Q 006114 444 IVEEGGLDALLLLLRTSQNTTILRVASGAIANLA-MNEMNQGLIMSRGGGQLLAKTASKTDDPQTLRMVAGALANLCG-N 521 (660)
Q Consensus 444 Ive~GgI~~Lv~LL~~s~d~~v~~~Aa~AL~nLA-~~~~n~~~Ive~g~I~~Ll~LL~~s~d~~v~~~Aa~aLanLa~-~ 521 (660)
+++.|+++.|+.+|. ++++.++..|+++|++|+ .++.++..++..|+++.|+.++.+ +++.++..|+++|++|+. +
T Consensus 82 ~~~~~~i~~l~~ll~-~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~~l~~-~~~~~~~~a~~~L~~l~~~~ 159 (252)
T 4hxt_A 82 IVDAGGVEVLVKLLT-STDSEVQKEAARALANIASGPDEAIKAIVDAGGVEVLVKLLTS-TDSEVQKEAARALANIASGP 159 (252)
T ss_dssp HHHTTHHHHHHHHTT-CSSHHHHHHHHHHHHHHTTSCHHHHHHHHHTTHHHHHHHHTTC-SCHHHHHHHHHHHHHHTTSC
T ss_pred HHHCCCHHHHHHHHc-CCCHHHHHHHHHHHHHHHcCCHHHHHHHHHCCCHHHHHHHHcC-CCHHHHHHHHHHHHHHHcCC
Confidence 999999999999998 789999999999999999 568899999999999999999975 789999999999999995 6
Q ss_pred hhHHHHHHhccHHHHHHHHhcCCCHHHHHHHHHHHHHhhccchhhhhhcchhhhHHHhhcChHHHHHHhhcCCCHHHHHH
Q 006114 522 EKLHTMLEEDGAIKALLAMVRSGNIDVIAQVARGLANFAKCESRAIVQGQRKGRSHLMEDSALEWLIANSKTNSASTRRH 601 (660)
Q Consensus 522 ~~~r~~iv~~G~V~~Lv~lL~s~~~~v~~~Al~aLanLA~~~~~~~aq~~~e~r~~Li~~G~v~~Lv~lL~s~d~~vr~~ 601 (660)
+..+..+++.|+++.|+.++.++++.++..|+++|++|+.++ +..+..+.+.|+++.|+.++.+.++.++..
T Consensus 160 ~~~~~~~~~~~~i~~L~~ll~~~~~~v~~~a~~~L~~l~~~~--------~~~~~~l~~~~~i~~L~~ll~~~~~~v~~~ 231 (252)
T 4hxt_A 160 DEAIKAIVDAGGVEVLVKLLTSTDSEVQKEAARALANIASGP--------TSAIKAIVDAGGVEVLQKLLTSTDSEVQKE 231 (252)
T ss_dssp HHHHHHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHTTSB--------HHHHHHHHHTTHHHHHHHGGGCSCHHHHHH
T ss_pred HHHHHHHHHCcCHHHHHHHHCCCCHHHHHHHHHHHHHHHcCC--------HHHHHHHHHCCCHHHHHHHHCCCcHHHHHH
Confidence 777788999999999999999999999999999999999754 345677889999999999999999999999
Q ss_pred HHHHHHHhhcCC
Q 006114 602 VELALCHLAQNE 613 (660)
Q Consensus 602 Aa~AL~nLa~~~ 613 (660)
|+++|++|+.+.
T Consensus 232 a~~~L~~l~~~~ 243 (252)
T 4hxt_A 232 AQRALENIKSGG 243 (252)
T ss_dssp HHHHHHHHHHTC
T ss_pred HHHHHHHHHcCC
Confidence 999999998765
No 9
>3now_A UNC-45 protein, SD10334P; armadillo repeat, HSP90, myosin, tetra-tricopeptide repeat, binding protein required for myosin function; 2.99A {Drosophila melanogaster}
Probab=99.93 E-value=1.6e-25 Score=262.00 Aligned_cols=275 Identities=16% Similarity=0.134 Sum_probs=238.3
Q ss_pred cchhhhhhcccCCCccccccchhhh---hhcCchhHHHHHhCCCHHHHHHhhCCCCHHHHHHHHHHHHHhhCCchhHHHH
Q 006114 368 KDYISKGSSRFGAPMSLQKSNPSRE---LSGQRATIAKICDEVGLPKILQLLTSEDPDVQIHAVKVVANLAAEDINQEKI 444 (660)
Q Consensus 368 ~g~i~~l~~~L~~~~~~vr~~~~~~---laa~~~~~~~I~e~ggI~~LV~LL~s~d~~vr~~Aa~aL~nLa~~~en~~~I 444 (660)
.|+++.++..+.++.+.++..+.++ ++.+..++..+++.|++|+|+.+|.+++..++..|+++|++|+.+......+
T Consensus 494 aGaVp~LV~LL~s~s~~vqe~Aa~aL~NLA~d~~~r~~Vv~~Gaip~Lv~LL~s~~~~~k~~Aa~AL~nL~~~~~p~~~~ 573 (810)
T 3now_A 494 EGITTALCALAKTESHNSQELIARVLNAVCGLKELRGKVVQEGGVKALLRMALEGTEKGKRHATQALARIGITINPEVSF 573 (810)
T ss_dssp TTHHHHHHHHHTCCCHHHHHHHHHHHHHHHTSHHHHHHHHHTTHHHHHHHHHHSSCHHHHHHHHHHHHHHHHHSCHHHHT
T ss_pred CcCHHHHHHHHcCCCHHHHHHHHHHHHHHcCCHHHHHHHHHCCCHHHHHHHHccCCHHHHHHHHHHHHHHhcCCChhhhh
Confidence 3889999999999999999998887 7888888888999999999999999999999999999999998732222211
Q ss_pred ---HHcCCHHHHHHHHccCCCHHHHHHHHHHHHHhhcC-chhHHHHHhcCccHHHHHhhcCCCCHHHHHHHHHHHHHHhc
Q 006114 445 ---VEEGGLDALLLLLRTSQNTTILRVASGAIANLAMN-EMNQGLIMSRGGGQLLAKTASKTDDPQTLRMVAGALANLCG 520 (660)
Q Consensus 445 ---ve~GgI~~Lv~LL~~s~d~~v~~~Aa~AL~nLA~~-~~n~~~Ive~g~I~~Ll~LL~~s~d~~v~~~Aa~aLanLa~ 520 (660)
...|+||+|+.+|.++.+...+..|+++|.||+.+ ++++..|++.|++|.|+.++.+ +++.++..|+++|+||+.
T Consensus 574 ~~~~~~~aIppLv~LL~~~~~~l~~~eAl~AL~NLa~~~d~~~~~Ii~aG~l~~Lv~LL~s-~~~~Vq~~A~~~L~NLa~ 652 (810)
T 3now_A 574 SGQRSLDVIRPLLNLLQQDCTALENFESLMALTNLASMNESVRQRIIKEQGVSKIEYYLME-DHLYLTRAAAQCLCNLVM 652 (810)
T ss_dssp TTHHHHHTHHHHHHTTSTTSCHHHHHHHHHHHHHHTTSCHHHHHHHHHTTHHHHHHHHHHS-CCTTHHHHHHHHHHHHTT
T ss_pred cchhhhcHHHHHHHHhCCCCcHHHHHHHHHHHHHHhcCCHHHHHHHHHcCCHHHHHHHHcC-CCHHHHHHHHHHHHHHhC
Confidence 12469999999997444555667899999999988 6789999999999999999975 788999999999999999
Q ss_pred ChhHHHHHHh-ccHHHHHHHHhcCCCHHHHHHHHHHHHHhhccchhhhhhcchhhhHHHhh-cChHHHHHHhhcCCCHHH
Q 006114 521 NEKLHTMLEE-DGAIKALLAMVRSGNIDVIAQVARGLANFAKCESRAIVQGQRKGRSHLME-DSALEWLIANSKTNSAST 598 (660)
Q Consensus 521 ~~~~r~~iv~-~G~V~~Lv~lL~s~~~~v~~~Al~aLanLA~~~~~~~aq~~~e~r~~Li~-~G~v~~Lv~lL~s~d~~v 598 (660)
+++.+..++. .|+++.|+.++.+++..++..|+++|+||+.++ +.....+++ .|++++|+.++.+++..+
T Consensus 653 ~~~~~~~~v~~~g~l~~Lv~LL~s~d~~vq~~Aa~ALanLt~~s--------~~~~~~ii~~~g~I~~Lv~LL~s~d~~v 724 (810)
T 3now_A 653 SEDVIKMFEGNNDRVKFLALLCEDEDEETATACAGALAIITSVS--------VKCCEKILAIASWLDILHTLIANPSPAV 724 (810)
T ss_dssp SHHHHHHHHSSSSHHHHHHHGGGCSSHHHHHHHHHHHHHHHHHC--------HHHHHHHHTSTTHHHHHHHHHTCSSHHH
T ss_pred ChHHHHHHHhccCcHHHHHHHhcCCCHHHHHHHHHHHHHHhCCC--------HHHHHHHHHHcCCHHHHHHHHCCCCHHH
Confidence 9999999886 799999999999999999999999999999743 334556777 899999999999999999
Q ss_pred HHHHHHHHHHhhcCC-ccHHHHHhcCcHHHHHHHHhcC--ChHHHHHHHHHHHhcC
Q 006114 599 RRHVELALCHLAQNE-DNARDFISRGGAKELVQISIES--SREDIRNLAKKTMKSN 651 (660)
Q Consensus 599 r~~Aa~AL~nLa~~~-e~~~~Ive~G~l~~Lv~lL~s~--s~~~ir~~A~~~L~~~ 651 (660)
+..|+|+|+|++.++ +....+++.|++++|+.++... ....+...|.++|.+.
T Consensus 725 q~~A~~aL~NL~~~s~e~~~~l~e~G~i~~L~~LL~~~d~~~~~i~e~Al~aL~~l 780 (810)
T 3now_A 725 QHRGIVIILNMINAGEEIAKKLFETDIMELLSGLGQLPDDTRAKAREVATQCLAAA 780 (810)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHTSTHHHHHTTSCCCTTSTTHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCCHHHHHHHHHCCCHHHHHHHHhCcccCcHHHHHHHHHHHHHH
Confidence 999999999998754 7789999999999999999765 3567888898888654
No 10
>4db8_A Armadillo-repeat protein; solenoid repeat, de novo protein; 2.50A {Synthetic construct}
Probab=99.93 E-value=4.3e-25 Score=221.95 Aligned_cols=236 Identities=23% Similarity=0.306 Sum_probs=209.5
Q ss_pred ccchhhhhhcccCCCccccccchhhh----hhcCchhHHHHHhCCCHHHHHHhhCCCCHHHHHHHHHHHHHhhC-CchhH
Q 006114 367 TKDYISKGSSRFGAPMSLQKSNPSRE----LSGQRATIAKICDEVGLPKILQLLTSEDPDVQIHAVKVVANLAA-EDINQ 441 (660)
Q Consensus 367 ~~g~i~~l~~~L~~~~~~vr~~~~~~----laa~~~~~~~I~e~ggI~~LV~LL~s~d~~vr~~Aa~aL~nLa~-~~en~ 441 (660)
....++.++..+.+.++.++..+.+. ++...+....+++.|++|.|+.+|.++++.++..|+++|++|+. +++++
T Consensus 10 ~~~~~~~~~~~L~s~~~~~~~~a~~~L~~~l~~~~~~~~~~~~~g~i~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~~~ 89 (252)
T 4db8_A 10 HGSELPQMTQQLNSDDMQEQLSATRKFSQILSDGNEQIQAVIDAGALPALVQLLSSPNEQILQEALWALSNIASGGNEQI 89 (252)
T ss_dssp TTCSHHHHHHHHHSSCSSHHHHHHHHHHHHHHHHHHHHHHHHHTTHHHHHHHGGGCSCHHHHHHHHHHHHHHTTSCHHHH
T ss_pred ccchHHHHHHHHcCCCHHHHHHHHHHHHHHHcCCCchHHHHHHcCcHHHHHHHHcCCCHHHHHHHHHHHHHHhcCCHHHH
Confidence 33457777888888777777776555 44456677789999999999999999999999999999999998 78899
Q ss_pred HHHHHcCCHHHHHHHHccCCCHHHHHHHHHHHHHhhcCchhH-HHHHhcCccHHHHHhhcCCCCHHHHHHHHHHHHHHhc
Q 006114 442 EKIVEEGGLDALLLLLRTSQNTTILRVASGAIANLAMNEMNQ-GLIMSRGGGQLLAKTASKTDDPQTLRMVAGALANLCG 520 (660)
Q Consensus 442 ~~Ive~GgI~~Lv~LL~~s~d~~v~~~Aa~AL~nLA~~~~n~-~~Ive~g~I~~Ll~LL~~s~d~~v~~~Aa~aLanLa~ 520 (660)
..+++.|++|.|+.+|. ++++.++..|+++|+||+.++.++ ..++..|++|.|+.+|.+ +++.++..|+++|++|+.
T Consensus 90 ~~i~~~g~i~~L~~lL~-~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~lL~~-~~~~v~~~a~~~L~~l~~ 167 (252)
T 4db8_A 90 QAVIDAGALPALVQLLS-SPNEQILQEALWALSNIASGGNEQIQAVIDAGALPALVQLLSS-PNEQILQEALWALSNIAS 167 (252)
T ss_dssp HHHHHTTHHHHHHHGGG-CSCHHHHHHHHHHHHHHTTSCHHHHHHHHHTTHHHHHHHGGGC-SCHHHHHHHHHHHHHHTT
T ss_pred HHHHHcCCHHHHHHHHc-CCCHHHHHHHHHHHHHhhcCCchHHHHHHHCCCHHHHHHHHhC-CCHHHHHHHHHHHHHHHc
Confidence 99999999999999998 679999999999999999998887 889999999999999975 789999999999999994
Q ss_pred -ChhHHHHHHhccHHHHHHHHhcCCCHHHHHHHHHHHHHhhccchhhhhhcchhhhHHHhhcChHHHHHHhhcCCCHHHH
Q 006114 521 -NEKLHTMLEEDGAIKALLAMVRSGNIDVIAQVARGLANFAKCESRAIVQGQRKGRSHLMEDSALEWLIANSKTNSASTR 599 (660)
Q Consensus 521 -~~~~r~~iv~~G~V~~Lv~lL~s~~~~v~~~Al~aLanLA~~~~~~~aq~~~e~r~~Li~~G~v~~Lv~lL~s~d~~vr 599 (660)
++.....+++.|+++.|+.++.++++.++..|+++|++|+..+ +..+..+.+.|+++.|+.++.+.++.++
T Consensus 168 ~~~~~~~~~~~~~~i~~L~~ll~~~~~~v~~~a~~~L~~l~~~~--------~~~~~~~~~~g~i~~L~~ll~~~~~~v~ 239 (252)
T 4db8_A 168 GGNEQIQAVIDAGALPALVQLLSSPNEQILQEALWALSNIASGG--------NEQKQAVKEAGALEKLEQLQSHENEKIQ 239 (252)
T ss_dssp SCHHHHHHHHHTTCHHHHHHGGGCSSHHHHHHHHHHHHHHTTSC--------HHHHHHHHHTTHHHHHHTTTTCSSSHHH
T ss_pred CChHHHHHHHHCCCHHHHHHHHCCCCHHHHHHHHHHHHHHhcCC--------HHHHHHHHHCCcHHHHHHHhCCCCHHHH
Confidence 6778888899999999999999999999999999999999654 3556678899999999999999999999
Q ss_pred HHHHHHHHHhhcC
Q 006114 600 RHVELALCHLAQN 612 (660)
Q Consensus 600 ~~Aa~AL~nLa~~ 612 (660)
..|+++|++|+.+
T Consensus 240 ~~A~~~L~~l~~~ 252 (252)
T 4db8_A 240 KEAQEALEKLQSH 252 (252)
T ss_dssp HTHHHHHHTTC--
T ss_pred HHHHHHHHHHhcC
Confidence 9999999999864
No 11
>3now_A UNC-45 protein, SD10334P; armadillo repeat, HSP90, myosin, tetra-tricopeptide repeat, binding protein required for myosin function; 2.99A {Drosophila melanogaster}
Probab=99.93 E-value=4.8e-25 Score=258.09 Aligned_cols=237 Identities=14% Similarity=0.100 Sum_probs=202.4
Q ss_pred HHHHhCCCHHHHHHhhCCCCHHHHHHHHHHHHHhhCCchhHHHHHHcCCHHHHHHHHccCCCHHHHHHHHHHHHHhhcCc
Q 006114 401 AKICDEVGLPKILQLLTSEDPDVQIHAVKVVANLAAEDINQEKIVEEGGLDALLLLLRTSQNTTILRVASGAIANLAMNE 480 (660)
Q Consensus 401 ~~I~e~ggI~~LV~LL~s~d~~vr~~Aa~aL~nLa~~~en~~~Ive~GgI~~Lv~LL~~s~d~~v~~~Aa~AL~nLA~~~ 480 (660)
+.+++.|++|.|+.+|.++++.++..|+|+|+||+.+++++..|++.||+|+|+.+|. +.++.+++.|+++|++|+.+.
T Consensus 489 ~~VveaGaVp~LV~LL~s~s~~vqe~Aa~aL~NLA~d~~~r~~Vv~~Gaip~Lv~LL~-s~~~~~k~~Aa~AL~nL~~~~ 567 (810)
T 3now_A 489 TVLANEGITTALCALAKTESHNSQELIARVLNAVCGLKELRGKVVQEGGVKALLRMAL-EGTEKGKRHATQALARIGITI 567 (810)
T ss_dssp HHHHHTTHHHHHHHHHTCCCHHHHHHHHHHHHHHHTSHHHHHHHHHTTHHHHHHHHHH-SSCHHHHHHHHHHHHHHHHHS
T ss_pred HHHHHCcCHHHHHHHHcCCCHHHHHHHHHHHHHHcCCHHHHHHHHHCCCHHHHHHHHc-cCCHHHHHHHHHHHHHHhcCC
Confidence 6788999999999999999999999999999999999899999999999999999998 667889999999999998653
Q ss_pred hhHHHH---HhcCccHHHHHhhcCCCCHHHHHHHHHHHHHHhcC-hhHHHHHHhccHHHHHHHHhcCCCHHHHHHHHHHH
Q 006114 481 MNQGLI---MSRGGGQLLAKTASKTDDPQTLRMVAGALANLCGN-EKLHTMLEEDGAIKALLAMVRSGNIDVIAQVARGL 556 (660)
Q Consensus 481 ~n~~~I---ve~g~I~~Ll~LL~~s~d~~v~~~Aa~aLanLa~~-~~~r~~iv~~G~V~~Lv~lL~s~~~~v~~~Al~aL 556 (660)
+....+ ...|+||+|+.+|....+...+..|+++|+||+.. ++.+..+++.|+++.|+.++.++++.++..|+++|
T Consensus 568 ~p~~~~~~~~~~~aIppLv~LL~~~~~~l~~~eAl~AL~NLa~~~d~~~~~Ii~aG~l~~Lv~LL~s~~~~Vq~~A~~~L 647 (810)
T 3now_A 568 NPEVSFSGQRSLDVIRPLLNLLQQDCTALENFESLMALTNLASMNESVRQRIIKEQGVSKIEYYLMEDHLYLTRAAAQCL 647 (810)
T ss_dssp CHHHHTTTHHHHHTHHHHHHTTSTTSCHHHHHHHHHHHHHHTTSCHHHHHHHHHTTHHHHHHHHHHSCCTTHHHHHHHHH
T ss_pred ChhhhhcchhhhcHHHHHHHHhCCCCcHHHHHHHHHHHHHHhcCCHHHHHHHHHcCCHHHHHHHHcCCCHHHHHHHHHHH
Confidence 222221 12469999999997533555567899999999954 68899999999999999999999999999999999
Q ss_pred HHhhccchhhhhhcchhhhHHHhh-cChHHHHHHhhcCCCHHHHHHHHHHHHHhhc-CCccHHHHHh-cCcHHHHHHHHh
Q 006114 557 ANFAKCESRAIVQGQRKGRSHLME-DSALEWLIANSKTNSASTRRHVELALCHLAQ-NEDNARDFIS-RGGAKELVQISI 633 (660)
Q Consensus 557 anLA~~~~~~~aq~~~e~r~~Li~-~G~v~~Lv~lL~s~d~~vr~~Aa~AL~nLa~-~~e~~~~Ive-~G~l~~Lv~lL~ 633 (660)
+||+.++ ..+..+.. .|+++.|+.++.+.+..++..|+|||++|+. ++.....++. .|++++|+.++.
T Consensus 648 ~NLa~~~---------~~~~~~v~~~g~l~~Lv~LL~s~d~~vq~~Aa~ALanLt~~s~~~~~~ii~~~g~I~~Lv~LL~ 718 (810)
T 3now_A 648 CNLVMSE---------DVIKMFEGNNDRVKFLALLCEDEDEETATACAGALAIITSVSVKCCEKILAIASWLDILHTLIA 718 (810)
T ss_dssp HHHTTSH---------HHHHHHHSSSSHHHHHHHGGGCSSHHHHHHHHHHHHHHHHHCHHHHHHHHTSTTHHHHHHHHHT
T ss_pred HHHhCCh---------HHHHHHHhccCcHHHHHHHhcCCCHHHHHHHHHHHHHHhCCCHHHHHHHHHHcCCHHHHHHHHC
Confidence 9999753 34444554 7999999999999999999999999999998 5678889998 899999999999
Q ss_pred cCChHHHHHHHHHHH
Q 006114 634 ESSREDIRNLAKKTM 648 (660)
Q Consensus 634 s~s~~~ir~~A~~~L 648 (660)
+++... +..|..++
T Consensus 719 s~d~~v-q~~A~~aL 732 (810)
T 3now_A 719 NPSPAV-QHRGIVII 732 (810)
T ss_dssp CSSHHH-HHHHHHHH
T ss_pred CCCHHH-HHHHHHHH
Confidence 766544 44444444
No 12
>1xm9_A Plakophilin 1; armadillo repeat, cell adhesion; 2.80A {Homo sapiens} SCOP: a.118.1.24
Probab=99.93 E-value=6.8e-25 Score=242.84 Aligned_cols=275 Identities=16% Similarity=0.195 Sum_probs=228.1
Q ss_pred cccchhhhhhcccCCCccccccchhhh---hhcC-chhHHHHHhCCCHHHHHHhhC-CCCHHHHHHHHHHHHHhhCCchh
Q 006114 366 YTKDYISKGSSRFGAPMSLQKSNPSRE---LSGQ-RATIAKICDEVGLPKILQLLT-SEDPDVQIHAVKVVANLAAEDIN 440 (660)
Q Consensus 366 ~~~g~i~~l~~~L~~~~~~vr~~~~~~---laa~-~~~~~~I~e~ggI~~LV~LL~-s~d~~vr~~Aa~aL~nLa~~~en 440 (660)
...|+++.++..+.+..+.++..+.++ ++.. +.+...|++.||+|.|+.+|. +++..++..|+++|+||+.++.+
T Consensus 41 ~~~g~i~~Lv~lL~s~~~~~~~~A~~aL~nLa~~~~~~k~~i~~~G~i~~Lv~lL~~~~~~~~~~~a~~aL~nLa~~~~~ 120 (457)
T 1xm9_A 41 YQLGGICKLVDLLRSPNQNVQQAAAGALRNLVFRSTTNKLETRRQNGIREAVSLLRRTGNAEIQKQLTGLLWNLSSTDEL 120 (457)
T ss_dssp HHTTHHHHHHHHTTSSCHHHHHHHHHHHHHHHSSCHHHHHHHHHTTCHHHHHHHHTTCCCHHHHHHHHHHHHHHHTSSST
T ss_pred HHcCCHHHHHHHHcCCCHHHHHHHHHHHHHHhcCCHHHHHHHHHcCCHHHHHHHHhhCCCHHHHHHHHHHHHHHhcCHHh
Confidence 345899999999998888888777776 6666 567777889999999999999 88999999999999999999999
Q ss_pred HHHHHHcCCHHHHHHHHc--------cC-------CCHHHHHHHHHHHHHhhcCchhHHHHHhc-CccHHHHHhhcC---
Q 006114 441 QEKIVEEGGLDALLLLLR--------TS-------QNTTILRVASGAIANLAMNEMNQGLIMSR-GGGQLLAKTASK--- 501 (660)
Q Consensus 441 ~~~Ive~GgI~~Lv~LL~--------~s-------~d~~v~~~Aa~AL~nLA~~~~n~~~Ive~-g~I~~Ll~LL~~--- 501 (660)
+..|++ ||+|+|+.+|. +. .++.+.+.|+++|+||+.+++++..+++. |++++|+.+|.+
T Consensus 121 ~~~i~~-g~i~~Lv~ll~~~~s~~~~~~~~~~~e~~~~~v~~~a~~aL~nLs~~~~~~~~i~~~~g~i~~Lv~lL~~~~~ 199 (457)
T 1xm9_A 121 KEELIA-DALPVLADRVIIPFSGWCDGNSNMSREVVDPEVFFNATGCLRNLSSADAGRQTMRNYSGLIDSLMAYVQNCVA 199 (457)
T ss_dssp HHHHHH-HHHHHHHHHTTHHHHTCC---------CCCHHHHHHHHHHHHHHTTSHHHHHHHTTSTTHHHHHHHHHHHHHH
T ss_pred HHHHHh-ccHHHHHHHHhccccccccCccchhcccccHHHHHHHHHHHHHHccCHHHHHHHHHcCCCHHHHHHHHHhhcc
Confidence 999999 99999999993 11 35678889999999999999999999997 999999877752
Q ss_pred --------------------------------------------------------------------------------
Q 006114 502 -------------------------------------------------------------------------------- 501 (660)
Q Consensus 502 -------------------------------------------------------------------------------- 501 (660)
T Consensus 200 ~~~~~~~~~e~a~~~L~nLs~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l 279 (457)
T 1xm9_A 200 ASRCDDKSVENCMCVLHNLSYRLDAEVPTRYRQLEYNARNAYTEKSSTGCFSNKSDKMMNNNYDCPLPEEETNPKGSGWL 279 (457)
T ss_dssp HTCTTCTTHHHHHHHHHHHTTTHHHHSCCHHHHHHHTC----------------------------CCCCCSSCCGGGGG
T ss_pred ccCCchHHHHHHHHHHHhcccchhccCcchhhhcccccccccccccccchhhccchhhhhccccCCccccccCchHHHHH
Confidence
Q ss_pred ---------------CCCHHHHHHHHHHHHHHhcCh-h----H-HHHHHhccHHHHHHHHhcCCCHHHHHHHHHHHHHhh
Q 006114 502 ---------------TDDPQTLRMVAGALANLCGNE-K----L-HTMLEEDGAIKALLAMVRSGNIDVIAQVARGLANFA 560 (660)
Q Consensus 502 ---------------s~d~~v~~~Aa~aLanLa~~~-~----~-r~~iv~~G~V~~Lv~lL~s~~~~v~~~Al~aLanLA 560 (660)
+.++.++..|+|+|+|||... . . +..+.+.|++|.|+.++.+++.+++..|+++|+|++
T Consensus 280 ~~~~~l~~L~~lL~~~~~~~~~e~a~~aL~nl~~~~~~~~~~~~~~~v~~~~~l~~Lv~LL~~~~~~v~~~A~~aL~nls 359 (457)
T 1xm9_A 280 YHSDAIRTYLNLMGKSKKDATLEACAGALQNLTASKGLMSSGMSQLIGLKEKGLPQIARLLQSGNSDVVRSGASLLSNMS 359 (457)
T ss_dssp GSHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHTTCSSSHHHHHHHHHHTTSCCHHHHHHHTTCSCHHHHHHHHHHHHHHH
T ss_pred hCcchHHHHHHHHhhcCCHHHHHHHHHHHHHhccCcCcchHHHHHHHHHHcCCchHHHHHHhCCCHhHHHHHHHHHHHHh
Confidence 123567777899999998432 2 2 333446899999999999999999999999999999
Q ss_pred ccchhhhhhcchhhhHHHhhcChHHHHHHhhcCCC------HHHHHHHHHHHHHhhc-CCccHHHHHhcCcHHHHHHHHh
Q 006114 561 KCESRAIVQGQRKGRSHLMEDSALEWLIANSKTNS------ASTRRHVELALCHLAQ-NEDNARDFISRGGAKELVQISI 633 (660)
Q Consensus 561 ~~~~~~~aq~~~e~r~~Li~~G~v~~Lv~lL~s~d------~~vr~~Aa~AL~nLa~-~~e~~~~Ive~G~l~~Lv~lL~ 633 (660)
.+. ..+. ++..|++|+|+.+|.+.+ +.+...++++|.++.. ++.+...+.+.|++++|+.++.
T Consensus 360 ~~~---------~~~~-~i~~~~i~~Lv~lL~~~~~~~~~~~~v~~~~l~~l~ni~~~~~~~~~~i~~~g~l~~L~~L~~ 429 (457)
T 1xm9_A 360 RHP---------LLHR-VMGNQVFPEVTRLLTSHTGNTSNSEDILSSACYTVRNLMASQPQLAKQYFSSSMLNNIINLCR 429 (457)
T ss_dssp TSG---------GGHH-HHHHHTHHHHHHTTTSCCSCSTTHHHHHHHHHHHHHHHHTTCTHHHHHHCCHHHHHHHHHHHH
T ss_pred cCH---------HHHH-HHHHhhhHHHHHhccCCCCCCCCcHHHHHHHHHHHHHHHhcCHHHHHHHHHcCCHHHHHHHHc
Confidence 752 2333 445689999999998864 3688899999999976 4577888889999999999999
Q ss_pred cCChHHHHHHHHHHHhcC
Q 006114 634 ESSREDIRNLAKKTMKSN 651 (660)
Q Consensus 634 s~s~~~ir~~A~~~L~~~ 651 (660)
++..+.++..|..+|.+.
T Consensus 430 ~~~~~~i~~~A~~~L~~~ 447 (457)
T 1xm9_A 430 SSASPKAAEAARLLLSDM 447 (457)
T ss_dssp CTTCHHHHHHHHHHHHTT
T ss_pred CCCcHHHHHHHHHHHHHH
Confidence 875677888888888543
No 13
>4db8_A Armadillo-repeat protein; solenoid repeat, de novo protein; 2.50A {Synthetic construct}
Probab=99.93 E-value=1.5e-24 Score=218.01 Aligned_cols=234 Identities=21% Similarity=0.297 Sum_probs=210.3
Q ss_pred CCHHHHHHhhCCCCHHHHHHHHHHHHHhhC-CchhHHHHHHcCCHHHHHHHHccCCCHHHHHHHHHHHHHhhc-CchhHH
Q 006114 407 VGLPKILQLLTSEDPDVQIHAVKVVANLAA-EDINQEKIVEEGGLDALLLLLRTSQNTTILRVASGAIANLAM-NEMNQG 484 (660)
Q Consensus 407 ggI~~LV~LL~s~d~~vr~~Aa~aL~nLa~-~~en~~~Ive~GgI~~Lv~LL~~s~d~~v~~~Aa~AL~nLA~-~~~n~~ 484 (660)
...+.++.+|.++++.++..|+++|.++.. .++++..+++.|++|.|+.+|. ++++.++..|+++|++|+. +++++.
T Consensus 12 ~~~~~~~~~L~s~~~~~~~~a~~~L~~~l~~~~~~~~~~~~~g~i~~L~~lL~-~~~~~v~~~a~~~L~~l~~~~~~~~~ 90 (252)
T 4db8_A 12 SELPQMTQQLNSDDMQEQLSATRKFSQILSDGNEQIQAVIDAGALPALVQLLS-SPNEQILQEALWALSNIASGGNEQIQ 90 (252)
T ss_dssp CSHHHHHHHHHSSCSSHHHHHHHHHHHHHHHHHHHHHHHHHTTHHHHHHHGGG-CSCHHHHHHHHHHHHHHTTSCHHHHH
T ss_pred chHHHHHHHHcCCCHHHHHHHHHHHHHHHcCCCchHHHHHHcCcHHHHHHHHc-CCCHHHHHHHHHHHHHHhcCCHHHHH
Confidence 568999999999999999999999987655 7778889999999999999998 6789999999999999998 589999
Q ss_pred HHHhcCccHHHHHhhcCCCCHHHHHHHHHHHHHHhcChhHH-HHHHhccHHHHHHHHhcCCCHHHHHHHHHHHHHhhccc
Q 006114 485 LIMSRGGGQLLAKTASKTDDPQTLRMVAGALANLCGNEKLH-TMLEEDGAIKALLAMVRSGNIDVIAQVARGLANFAKCE 563 (660)
Q Consensus 485 ~Ive~g~I~~Ll~LL~~s~d~~v~~~Aa~aLanLa~~~~~r-~~iv~~G~V~~Lv~lL~s~~~~v~~~Al~aLanLA~~~ 563 (660)
.++..|++|.|+.+|.+ +++.++..|+++|+||+.++..+ ..++..|+++.|+.++.++++.++..|+++|++|+.++
T Consensus 91 ~i~~~g~i~~L~~lL~~-~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~lL~~~~~~v~~~a~~~L~~l~~~~ 169 (252)
T 4db8_A 91 AVIDAGALPALVQLLSS-PNEQILQEALWALSNIASGGNEQIQAVIDAGALPALVQLLSSPNEQILQEALWALSNIASGG 169 (252)
T ss_dssp HHHHTTHHHHHHHGGGC-SCHHHHHHHHHHHHHHTTSCHHHHHHHHHTTHHHHHHHGGGCSCHHHHHHHHHHHHHHTTSC
T ss_pred HHHHcCCHHHHHHHHcC-CCHHHHHHHHHHHHHhhcCCchHHHHHHHCCCHHHHHHHHhCCCHHHHHHHHHHHHHHHcCC
Confidence 99999999999999976 78999999999999999888888 88999999999999999999999999999999999764
Q ss_pred hhhhhhcchhhhHHHhhcChHHHHHHhhcCCCHHHHHHHHHHHHHhhcCC-ccHHHHHhcCcHHHHHHHHhcCChHHHHH
Q 006114 564 SRAIVQGQRKGRSHLMEDSALEWLIANSKTNSASTRRHVELALCHLAQNE-DNARDFISRGGAKELVQISIESSREDIRN 642 (660)
Q Consensus 564 ~~~~aq~~~e~r~~Li~~G~v~~Lv~lL~s~d~~vr~~Aa~AL~nLa~~~-e~~~~Ive~G~l~~Lv~lL~s~s~~~ir~ 642 (660)
+ ..+..+.+.|+++.|+.++.++++.++..|+++|++|+.++ .....+++.|+++.|+.++.+++. .++.
T Consensus 170 ~--------~~~~~~~~~~~i~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~L~~ll~~~~~-~v~~ 240 (252)
T 4db8_A 170 N--------EQIQAVIDAGALPALVQLLSSPNEQILQEALWALSNIASGGNEQKQAVKEAGALEKLEQLQSHENE-KIQK 240 (252)
T ss_dssp H--------HHHHHHHHTTCHHHHHHGGGCSSHHHHHHHHHHHHHHTTSCHHHHHHHHHTTHHHHHHTTTTCSSS-HHHH
T ss_pred h--------HHHHHHHHCCCHHHHHHHHCCCCHHHHHHHHHHHHHHhcCCHHHHHHHHHCCcHHHHHHHhCCCCH-HHHH
Confidence 3 45566888999999999999999999999999999999654 677888999999999999987654 6777
Q ss_pred HHHHHHhcC
Q 006114 643 LAKKTMKSN 651 (660)
Q Consensus 643 ~A~~~L~~~ 651 (660)
.|..+|.+.
T Consensus 241 ~A~~~L~~l 249 (252)
T 4db8_A 241 EAQEALEKL 249 (252)
T ss_dssp THHHHHHTT
T ss_pred HHHHHHHHH
Confidence 777777543
No 14
>3ul1_B Importin subunit alpha-2; arm repeat, armadillo repeat, nuclear transport, nuclear LOC signal binding, importin beta binding; 1.90A {Mus musculus} PDB: 3ukx_B 3uky_B 3ukz_B 3ukw_B 3ul0_B 3oqs_A 3rz9_A 3rzx_A 3uvu_A 1q1s_C 1q1t_C 3knd_A 1ejy_I 1iq1_C 1ejl_I 1pjn_B 1pjm_B 3q5u_A 3fey_C 3fex_C ...
Probab=99.93 E-value=1.6e-24 Score=242.77 Aligned_cols=273 Identities=14% Similarity=0.230 Sum_probs=228.9
Q ss_pred cccchhhhhhcccCCC-ccccccchhhh---hhcCc-hhHHHHHhCCCHHHHHHhhCCCCHHHHHHHHHHHHHhhC-Cch
Q 006114 366 YTKDYISKGSSRFGAP-MSLQKSNPSRE---LSGQR-ATIAKICDEVGLPKILQLLTSEDPDVQIHAVKVVANLAA-EDI 439 (660)
Q Consensus 366 ~~~g~i~~l~~~L~~~-~~~vr~~~~~~---laa~~-~~~~~I~e~ggI~~LV~LL~s~d~~vr~~Aa~aL~nLa~-~~e 439 (660)
.+.|.++.++..|... .+.++..++++ ++..+ .....+++.|+||.|+.+|.+++..++..|+++|+||+. ++.
T Consensus 97 i~~G~ip~LV~lL~~~~~~~lq~~Aa~aL~nias~~~e~~~~vv~~GaIp~Lv~lL~s~~~~v~e~A~~aL~nLa~d~~~ 176 (510)
T 3ul1_B 97 IRAGLIPKFVSFLGKTDCSPIQFESAWALTNIASGTSEQTKAVVDGGAIPAFISLLASPHAHISEQAVWALGNIAGDGSA 176 (510)
T ss_dssp HHTTHHHHHHHHTTCTTCHHHHHHHHHHHHHHHTSCHHHHHHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHHTTCHH
T ss_pred HHCCCHHHHHHHHCCCCCHHHHHHHHHHHHHHhcCCHHHHHHHHHCCCHHHHHHHHcCCCHHHHHHHHHHHHHHHhCCHH
Confidence 4558999999999744 45677777776 55544 466778899999999999999999999999999999999 577
Q ss_pred hHHHHHHcCCHHHHHHHHcc----------------------------------------------CCCHHHHHHHHHHH
Q 006114 440 NQEKIVEEGGLDALLLLLRT----------------------------------------------SQNTTILRVASGAI 473 (660)
Q Consensus 440 n~~~Ive~GgI~~Lv~LL~~----------------------------------------------s~d~~v~~~Aa~AL 473 (660)
++..+.+.|++++|+.+|.. ++++.++..|+++|
T Consensus 177 ~r~~v~~~G~i~~Ll~lL~~~~~~~~~~~~~~~a~~~L~nl~~~~~~~~~~~~~~~~lp~L~~LL~~~~~~v~~~A~~aL 256 (510)
T 3ul1_B 177 FRDLVIKHGAIDPLLALLAVPDLSTLACGYLRNLTWTLSNLCRNKNPAPPLDAVEQILPTLVRLLHHNDPEVLADSCWAI 256 (510)
T ss_dssp HHHHHHHTTCHHHHHHHTCSSCGGGSCHHHHHHHHHHHHHHHCCCSSCCCHHHHHHHHHHHHHHTTCSCHHHHHHHHHHH
T ss_pred HHHHHHHcCChHHHHHHHHhccchhhhHHHHHHHHHHHHHHhhcccchhHHHHHHhHHHHHHHHHhcCCHHHHHHHHHHH
Confidence 78889999999988887742 23446777888888
Q ss_pred HHhhcCc-hhHHHHHhcCccHHHHHhhcCCCCHHHHHHHHHHHHHHh-cChhHHHHHHhccHHHHHHHHhcCCCHHHHHH
Q 006114 474 ANLAMNE-MNQGLIMSRGGGQLLAKTASKTDDPQTLRMVAGALANLC-GNEKLHTMLEEDGAIKALLAMVRSGNIDVIAQ 551 (660)
Q Consensus 474 ~nLA~~~-~n~~~Ive~g~I~~Ll~LL~~s~d~~v~~~Aa~aLanLa-~~~~~r~~iv~~G~V~~Lv~lL~s~~~~v~~~ 551 (660)
++|+.++ .....++..|+++.|+.+|.+ +++.++..|+++|+|++ .++..+..+++.|+++.|+.++.++++.++..
T Consensus 257 ~~L~~~~~~~~~~i~~~g~i~~Lv~lL~~-~~~~v~~~al~aL~nl~~~~~~~~~~i~~~g~l~~L~~LL~~~~~~v~~~ 335 (510)
T 3ul1_B 257 SYLTDGPNERIEMVVKKGVVPQLVKLLGA-TELPIVTPALRAIGNIVTGTDEQTQKVIDAGALAVFPSLLTNPKTNIQKE 335 (510)
T ss_dssp HHHTSSCHHHHHHHHTTTCHHHHHHHHTC-SCHHHHHHHHHHHHHHTTSCHHHHHHHHHTTGGGGCC-CTTCSSHHHHHH
T ss_pred HHHhhchhhhHHHHHhcccchhhhhhhcC-CChhhhhHHHHHHHHhhcCCHHHHHHHhhccchHHHHHHhcCCCHHHHHH
Confidence 8888774 445667789999999999974 78999999999999997 67888889999999999999999999999999
Q ss_pred HHHHHHHhhccchhhhhhcchhhhHHHhhcChHHHHHHhhcCCCHHHHHHHHHHHHHhhcC--CccHHHHHhcCcHHHHH
Q 006114 552 VARGLANFAKCESRAIVQGQRKGRSHLMEDSALEWLIANSKTNSASTRRHVELALCHLAQN--EDNARDFISRGGAKELV 629 (660)
Q Consensus 552 Al~aLanLA~~~~~~~aq~~~e~r~~Li~~G~v~~Lv~lL~s~d~~vr~~Aa~AL~nLa~~--~e~~~~Ive~G~l~~Lv 629 (660)
|+++|+||+.++ +..+..+++.|++|.|+.++.+.+..++..|+|||+|++.+ .+....+++.|++++|+
T Consensus 336 A~~aL~nl~a~~--------~~~~~~v~~~g~i~~Lv~lL~~~~~~v~~~Aa~aL~Nl~~~~~~~~~~~L~~~g~i~~L~ 407 (510)
T 3ul1_B 336 ATWTMSNITAGR--------QDQIQQVVNHGLVPFLVGVLSKADFKTQKEAAWAITNYTSGGTVEQIVYLVHCGIIEPLM 407 (510)
T ss_dssp HHHHHHHHTTSC--------HHHHHHHHHTTHHHHHHHHHHSSCHHHHHHHHHHHHHHHHHCCHHHHHHHHHTTCHHHHH
T ss_pred HHHHHHHHHcCc--------HHHHHHHHhcCCHHHHHHHHcCCCHHHHHHHHHHHHHHHccCCHHHHHHHHHCCCHHHHH
Confidence 999999999765 34667788999999999999999999999999999999874 46778899999999999
Q ss_pred HHHhcCChHHHHHHHHHHH
Q 006114 630 QISIESSREDIRNLAKKTM 648 (660)
Q Consensus 630 ~lL~s~s~~~ir~~A~~~L 648 (660)
.++.+.++. +...+..+|
T Consensus 408 ~LL~~~d~~-i~~~~L~aL 425 (510)
T 3ul1_B 408 NLLSAKDTK-IIQVILDAI 425 (510)
T ss_dssp HGGGCSCHH-HHHHHHHHH
T ss_pred HHhcCCCHH-HHHHHHHHH
Confidence 999987654 444444444
No 15
>3tpo_A Importin subunit alpha-2; nuclear import, protein transport; 2.10A {Mus musculus} PDB: 1qgk_B 1qgr_B
Probab=99.93 E-value=1.8e-24 Score=243.29 Aligned_cols=271 Identities=16% Similarity=0.234 Sum_probs=228.0
Q ss_pred cccchhhhhhcccCC-Cccccccchhhh---hhcCch-hHHHHHhCCCHHHHHHhhCCCCHHHHHHHHHHHHHhhC-Cch
Q 006114 366 YTKDYISKGSSRFGA-PMSLQKSNPSRE---LSGQRA-TIAKICDEVGLPKILQLLTSEDPDVQIHAVKVVANLAA-EDI 439 (660)
Q Consensus 366 ~~~g~i~~l~~~L~~-~~~~vr~~~~~~---laa~~~-~~~~I~e~ggI~~LV~LL~s~d~~vr~~Aa~aL~nLa~-~~e 439 (660)
...|.++.++..|.. ..+.++..++++ ++.+++ ....+++.|+||.|+.+|.+++..++..|+++|+||+. ++.
T Consensus 116 i~~G~ip~Lv~lL~~~~~~~~q~~Aa~aL~nia~~~~~~~~~vv~~Gaip~Lv~LL~s~~~~v~e~A~~aL~nLa~~~~~ 195 (529)
T 3tpo_A 116 IRAGLIPKFVSFLGKTDCSPIQFESAWALTNIASGTSEQTKAVVDGGAIPAFISLLASPHAHISEQAVWALGNIAGAGSA 195 (529)
T ss_dssp HHTTHHHHHHHHHTCTTCHHHHHHHHHHHHHHHTSCHHHHHHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHHTTCHH
T ss_pred HHCCCHHHHHHHHcCCCCHHHHHHHHHHHHHHHcCCHHHHHHHHHCCCHHHHHHHHcCCCHHHHHHHHHHHHHHhccCHH
Confidence 445899999998864 345666666666 566555 45678899999999999999999999999999999998 678
Q ss_pred hHHHHHHcCCHHHHHHHHccCC----CHHHHHHHHHHHHHhhcCchh-HHHHHhcCccHHHHHhhcCCCCHHHHHHHHHH
Q 006114 440 NQEKIVEEGGLDALLLLLRTSQ----NTTILRVASGAIANLAMNEMN-QGLIMSRGGGQLLAKTASKTDDPQTLRMVAGA 514 (660)
Q Consensus 440 n~~~Ive~GgI~~Lv~LL~~s~----d~~v~~~Aa~AL~nLA~~~~n-~~~Ive~g~I~~Ll~LL~~s~d~~v~~~Aa~a 514 (660)
++..++..||+++|+.+|.... ...+.+.++++|++++.+... .......|++|.|+.++.+ +++.++..|+|+
T Consensus 196 ~r~~i~~~g~i~~Ll~lL~~~~~~~~~~~~~~~a~~~L~nl~~~~~~~~~~~~~~~~lp~L~~LL~~-~~~~v~~~a~~a 274 (529)
T 3tpo_A 196 FRDLVIKHGAIDPLLALLAVPDLSTLACGYLRNLTWTLSNLCRNKNPAPPLDAVEQILPTLVRLLHH-NDPEVLADSCWA 274 (529)
T ss_dssp HHHHHHHTTCHHHHHHTTCSSCGGGSCHHHHHHHHHHHHHHHCCCTTCCCHHHHHHHHHHHHHHTTS-SCHHHHHHHHHH
T ss_pred HHHHHHHcCCcHHHHHHHhccchhHhHHHHHHHHHHHHHHHHhcccchhhHHHHhhHHHHHHHHhcC-CcHHHHHHHHHH
Confidence 8999999999999999997432 345788999999999988543 4444557899999999964 899999999999
Q ss_pred HHHHhcC-hhHHHHHHhccHHHHHHHHhcCCCHHHHHHHHHHHHHhhccchhhhhhcchhhhHHHhhcChHHHHHHhhcC
Q 006114 515 LANLCGN-EKLHTMLEEDGAIKALLAMVRSGNIDVIAQVARGLANFAKCESRAIVQGQRKGRSHLMEDSALEWLIANSKT 593 (660)
Q Consensus 515 LanLa~~-~~~r~~iv~~G~V~~Lv~lL~s~~~~v~~~Al~aLanLA~~~~~~~aq~~~e~r~~Li~~G~v~~Lv~lL~s 593 (660)
|++++.. +.....++..|+++.|+.++.++++.++..|+.+|+||+.+++ ..+..+++.|+++.|+.++.+
T Consensus 275 L~~l~~~~~~~~~~v~~~g~i~~Lv~lL~~~~~~v~~~a~~aL~nl~~~~~--------~~~~~i~~~g~l~~L~~LL~~ 346 (529)
T 3tpo_A 275 ISYLTDGPNERIEMVVKKGVVPQLVKLLGATELPIVTPALRAIGNIVTGTD--------EQTQKVIDAGALAVFPSLLTN 346 (529)
T ss_dssp HHHHHSSCHHHHHHHHTTTCHHHHHHHHTCSCHHHHHHHHHHHHHHTTSCH--------HHHHHHHHTTGGGGHHHHTTC
T ss_pred HHHhhhhhhhhHHHHHhccchHHHHHHhcCCChhHHHHHHHHHHHHHccch--------HHHHHHhhcccHHHHHHHHcC
Confidence 9999954 5556677889999999999999999999999999999997653 456678899999999999999
Q ss_pred CCHHHHHHHHHHHHHhhcCC-ccHHHHHhcCcHHHHHHHHhcCChHHHHHHHH
Q 006114 594 NSASTRRHVELALCHLAQNE-DNARDFISRGGAKELVQISIESSREDIRNLAK 645 (660)
Q Consensus 594 ~d~~vr~~Aa~AL~nLa~~~-e~~~~Ive~G~l~~Lv~lL~s~s~~~ir~~A~ 645 (660)
+++.++..|+|+|+||+.++ .....++..|++|+|+.++.+++.+..+.++.
T Consensus 347 ~~~~i~~~a~~aL~nl~~~~~~~~~~v~~~g~i~~Lv~lL~~~~~~v~~~A~~ 399 (529)
T 3tpo_A 347 PKTNIQKEATWTMSNITAGRQDQIQQVVNHGLVPFLVGVLSKADFKTQKAAAW 399 (529)
T ss_dssp SSHHHHHHHHHHHHHHHTSCHHHHHHHHHTTHHHHHHHHHHSSCHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHHhcccHHHHHHHHhcCcHHHHHHHhcCCCHHHHHHHHH
Confidence 99999999999999999866 66777889999999999999877655444443
No 16
>4b8j_A Importin subunit alpha-1A; transport protein, nuclear localization signal; 2.00A {Oryza sativa japonica group} PDB: 4b8o_A 2yns_A 4b8p_A
Probab=99.92 E-value=6e-24 Score=237.29 Aligned_cols=274 Identities=17% Similarity=0.226 Sum_probs=234.2
Q ss_pred cchhhhhhcccCCCccccccchhhh---h-hcCc-hhHHHHHhCCCHHHHHHhhCCCC-HHHHHHHHHHHHHhhC-Cchh
Q 006114 368 KDYISKGSSRFGAPMSLQKSNPSRE---L-SGQR-ATIAKICDEVGLPKILQLLTSED-PDVQIHAVKVVANLAA-EDIN 440 (660)
Q Consensus 368 ~g~i~~l~~~L~~~~~~vr~~~~~~---l-aa~~-~~~~~I~e~ggI~~LV~LL~s~d-~~vr~~Aa~aL~nLa~-~~en 440 (660)
...++.++..+.+..+.++..+.+. + +... +....++..|++|.|+.+|.+++ +.++..|+++|++|+. ++++
T Consensus 73 ~~~l~~lv~~L~s~~~~~~~~A~~~L~~l~s~~~~~~~~~~~~~g~v~~Lv~lL~~~~~~~v~~~A~~~L~~l~~~~~~~ 152 (528)
T 4b8j_A 73 LESLPAMIGGVYSDDNNLQLEATTQFRKLLSIERSPPIEEVIQSGVVPRFVQFLTREDFPQLQFEAAWALTNIASGTSEN 152 (528)
T ss_dssp --CHHHHHHHHTSSCHHHHHHHHHHHHHHHTCSSSCCHHHHHHTTCHHHHHHHHTCTTCHHHHHHHHHHHHHHHTSCHHH
T ss_pred HHHHHHHHHHHcCCCHHHHHHHHHHHHHHhcCCCCchHHHHHHCCCHHHHHHHhCCCCCHHHHHHHHHHHHHHhCCCHHH
Confidence 3568888888888777777766555 2 4443 67888999999999999999886 9999999999999999 5888
Q ss_pred HHHHHHcCCHHHHHHHHccCCCHHHHHHHHHHHHHhhcC-chhHHHHHhcCccHHHHHhhcCCCCHHHHHHHHHHHHHHh
Q 006114 441 QEKIVEEGGLDALLLLLRTSQNTTILRVASGAIANLAMN-EMNQGLIMSRGGGQLLAKTASKTDDPQTLRMVAGALANLC 519 (660)
Q Consensus 441 ~~~Ive~GgI~~Lv~LL~~s~d~~v~~~Aa~AL~nLA~~-~~n~~~Ive~g~I~~Ll~LL~~s~d~~v~~~Aa~aLanLa 519 (660)
+..++..|++|.|+.+|. ++++.++..|+++|++|+.+ +.++..++..|++++|+.++..+.++.++..|+|+|++|+
T Consensus 153 ~~~~~~~g~i~~L~~lL~-~~~~~v~~~a~~aL~~l~~~~~~~~~~i~~~g~l~~Ll~lL~~~~~~~v~~~a~~~L~~L~ 231 (528)
T 4b8j_A 153 TKVVIDHGAVPIFVKLLG-SSSDDVREQAVWALGNVAGDSPKCRDLVLANGALLPLLAQLNEHTKLSMLRNATWTLSNFC 231 (528)
T ss_dssp HHHHHHTTHHHHHHHHTT-CSCHHHHHHHHHHHHHHHHTCHHHHHHHHHTTCHHHHHHTCCTTCCHHHHHHHHHHHHHHH
T ss_pred HHHHHhCCcHHHHHHHhc-CCCHHHHHHHHHHHHHHhCCChhhHHHHHHCCcHHHHHHHHhcCCCHHHHHHHHHHHHHHH
Confidence 999999999999999998 68999999999999999977 7789999999999999999966689999999999999999
Q ss_pred cChhHHHHHHhccHHHHHHHHhcCCCHHHHHHHHHHHHHhhccchhhhhhcchhhhHHHhhcChHHHHHHhhcCCCHHHH
Q 006114 520 GNEKLHTMLEEDGAIKALLAMVRSGNIDVIAQVARGLANFAKCESRAIVQGQRKGRSHLMEDSALEWLIANSKTNSASTR 599 (660)
Q Consensus 520 ~~~~~r~~iv~~G~V~~Lv~lL~s~~~~v~~~Al~aLanLA~~~~~~~aq~~~e~r~~Li~~G~v~~Lv~lL~s~d~~vr 599 (660)
.+..........|+++.|+.++.++++.++..|+++|++|+...+ .....++..|+++.|+.++.+.++.++
T Consensus 232 ~~~~~~~~~~~~~~l~~L~~lL~~~~~~v~~~a~~aL~~l~~~~~--------~~~~~~~~~g~v~~Lv~lL~~~~~~v~ 303 (528)
T 4b8j_A 232 RGKPQPSFEQTRPALPALARLIHSNDEEVLTDACWALSYLSDGTN--------DKIQAVIEAGVCPRLVELLLHPSPSVL 303 (528)
T ss_dssp CSSSCCCHHHHTTHHHHHHHHTTCCCHHHHHHHHHHHHHHTSSCH--------HHHHHHHHTTCHHHHHHHTTCSCHHHH
T ss_pred cCCCCCcHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHcCCH--------HHHHHHHHcCHHHHHHHHHcCCChhHH
Confidence 664444455568999999999999999999999999999997643 233467789999999999999999999
Q ss_pred HHHHHHHHHhhcCC-ccHHHHHhcCcHHHHHHHHhcCChHHHHHHHHHHHhc
Q 006114 600 RHVELALCHLAQNE-DNARDFISRGGAKELVQISIESSREDIRNLAKKTMKS 650 (660)
Q Consensus 600 ~~Aa~AL~nLa~~~-e~~~~Ive~G~l~~Lv~lL~s~s~~~ir~~A~~~L~~ 650 (660)
..|+++|++|+.+. .....++..|+++.|+.++.++..+.++..|..+|.+
T Consensus 304 ~~a~~~L~nl~~~~~~~~~~~~~~~~l~~L~~lL~~~~~~~v~~~A~~~L~n 355 (528)
T 4b8j_A 304 IPALRTVGNIVTGDDAQTQCIIDHQALPCLLSLLTQNLKKSIKKEACWTISN 355 (528)
T ss_dssp HHHHHHHHHHTTSCHHHHHHHHTTTHHHHHHHHHHSCCCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHhhhHHHHHHHHcCCCcHHHHHHHHHHHHH
Confidence 99999999999865 5667788999999999999987456666666666643
No 17
>3nmz_A APC variant protein; protein-protein complex, armadillo repeats, cell adhesion-CE complex; 3.01A {Homo sapiens}
Probab=99.92 E-value=1.2e-24 Score=241.36 Aligned_cols=238 Identities=18% Similarity=0.199 Sum_probs=202.7
Q ss_pred cchhhhhhcccCC-----------Cccccccchhhh---hhcCchhHHH-HHhCCC-HHHHHHhhCCCCHHHHHHHHHHH
Q 006114 368 KDYISKGSSRFGA-----------PMSLQKSNPSRE---LSGQRATIAK-ICDEVG-LPKILQLLTSEDPDVQIHAVKVV 431 (660)
Q Consensus 368 ~g~i~~l~~~L~~-----------~~~~vr~~~~~~---laa~~~~~~~-I~e~gg-I~~LV~LL~s~d~~vr~~Aa~aL 431 (660)
.|+++.++..+.. ..+.++..+.++ ++..++..+. +...+| ||.|+.+|.++++.++..|+++|
T Consensus 188 ~G~l~~Lv~LL~~~~~~~~~~~~~~~~~l~~~Aa~aL~nLa~~~~~~k~~i~~~~GaIp~LV~LL~s~~~~v~~~A~~aL 267 (458)
T 3nmz_A 188 LGGLQAIAELLQVDCEMYGLTNDHYSITLRRYAGMALTNLTFGDVANKATLCSMKGCMRALVAQLKSESEDLQQVIASVL 267 (458)
T ss_dssp TTHHHHHHHHHHHHHHHSTTCCCHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHCHHHHHHHHHGGGCSCHHHHHHHHHHH
T ss_pred CCCHHHHHHHHhhhhcccccccCCCCHHHHHHHHHHHHHHhCCCcccHHHHHHcCCcHHHHHHHHhCCCHHHHHHHHHHH
Confidence 3677777766631 122344555555 6766665554 445555 99999999999999999999999
Q ss_pred HHhhCC--chhHHHHHHcCCHHHHHHHHccCCCHHHHHHHHHHHHHhhc-CchhHHHHH-hcCccHHHHHhhcCCCCH--
Q 006114 432 ANLAAE--DINQEKIVEEGGLDALLLLLRTSQNTTILRVASGAIANLAM-NEMNQGLIM-SRGGGQLLAKTASKTDDP-- 505 (660)
Q Consensus 432 ~nLa~~--~en~~~Ive~GgI~~Lv~LL~~s~d~~v~~~Aa~AL~nLA~-~~~n~~~Iv-e~g~I~~Ll~LL~~s~d~-- 505 (660)
++|+.. +.++..|++.||||+|+.+|..+.++.++..|+++|+||+. +++++..|+ ..|+||.|+.+|....+.
T Consensus 268 ~nLs~~~~~~~k~~I~~~GaI~~LV~lLl~s~~~~v~~~A~~aL~nLs~~~~~nk~~I~~~~Gal~~Lv~LL~~~~~~~~ 347 (458)
T 3nmz_A 268 RNLSWRADVNSKKTLREVGSVKALMECALEVKKESTLKSVLSALWNLSAHCTENKADICAVDGALAFLVGTLTYRSQTNT 347 (458)
T ss_dssp HHHTSSCCHHHHHHHHHTTHHHHHHHHHTTCCSHHHHHHHHHHHHHHHHHCHHHHHHHHHSTTHHHHHHHHTTCCCSSST
T ss_pred HHHhcCCCHHHHHHHHHcCCHHHHHHHHhcCCCHHHHHHHHHHHHHHccCCHHHHHHHHHhcCcHHHHHHHhcCCCCcch
Confidence 999984 67899999999999999987657789999999999999999 788999998 799999999999764333
Q ss_pred -HHHHHHHHHHHHHh----cChhHHHHHHhccHHHHHHHHhcCCCHHHHHHHHHHHHHhhccchhhhhhcchhhhHHHhh
Q 006114 506 -QTLRMVAGALANLC----GNEKLHTMLEEDGAIKALLAMVRSGNIDVIAQVARGLANFAKCESRAIVQGQRKGRSHLME 580 (660)
Q Consensus 506 -~v~~~Aa~aLanLa----~~~~~r~~iv~~G~V~~Lv~lL~s~~~~v~~~Al~aLanLA~~~~~~~aq~~~e~r~~Li~ 580 (660)
.++..|+|+|+||+ .+++++..+++.|+++.|+.+|.+++..++..|+++|+||+..+ ++.+..+++
T Consensus 348 ~~v~~~A~~aL~nLs~~~a~~~~~~~~i~~~G~i~~Lv~LL~~~~~~v~~~A~~aL~nLa~~~--------~~~~~~i~~ 419 (458)
T 3nmz_A 348 LAIIESGGGILRNVSSLIATNEDHRQILRENNCLQTLLQHLKSHSLTIVSNACGTLWNLSARN--------PKDQEALWD 419 (458)
T ss_dssp THHHHHHHHHHHHHHHHHTTCHHHHHHHHHTTHHHHHHHHSSCSCHHHHHHHHHHHHHHHSSC--------HHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhcccCCHHHHHHHHHcccHHHHHHHHcCCChHHHHHHHHHHHHHHcCC--------HHHHHHHHH
Confidence 58999999999998 48999999999999999999999999999999999999999654 456778999
Q ss_pred cChHHHHHHhhcCCCHHHHHHHHHHHHHhhcCC
Q 006114 581 DSALEWLIANSKTNSASTRRHVELALCHLAQNE 613 (660)
Q Consensus 581 ~G~v~~Lv~lL~s~d~~vr~~Aa~AL~nLa~~~ 613 (660)
.|++|+|+.++.+.++.++..|++||.||+.+.
T Consensus 420 ~G~I~~Lv~LL~s~~~~v~~~Aa~AL~nL~~~~ 452 (458)
T 3nmz_A 420 MGAVSMLKNLIHSKHKMIAMGSAAALRNLMANR 452 (458)
T ss_dssp HTHHHHHHTTTTCSSHHHHHHHHHHHHHHHTCC
T ss_pred CCCHHHHHHHHhCCCHHHHHHHHHHHHHHHcCC
Confidence 999999999999999999999999999998765
No 18
>4b8j_A Importin subunit alpha-1A; transport protein, nuclear localization signal; 2.00A {Oryza sativa japonica group} PDB: 4b8o_A 2yns_A 4b8p_A
Probab=99.92 E-value=7.8e-24 Score=236.41 Aligned_cols=273 Identities=17% Similarity=0.216 Sum_probs=233.2
Q ss_pred ccchhhhhhcccCCCc-cccccchhhh---hhcC-chhHHHHHhCCCHHHHHHhhCCCCHHHHHHHHHHHHHhhC-Cchh
Q 006114 367 TKDYISKGSSRFGAPM-SLQKSNPSRE---LSGQ-RATIAKICDEVGLPKILQLLTSEDPDVQIHAVKVVANLAA-EDIN 440 (660)
Q Consensus 367 ~~g~i~~l~~~L~~~~-~~vr~~~~~~---laa~-~~~~~~I~e~ggI~~LV~LL~s~d~~vr~~Aa~aL~nLa~-~~en 440 (660)
..|.++.++..+.+.. +.++..++++ ++.. ......++..|++|.|+.+|.++++.++..|+++|++|+. .+.+
T Consensus 115 ~~g~v~~Lv~lL~~~~~~~v~~~A~~~L~~l~~~~~~~~~~~~~~g~i~~L~~lL~~~~~~v~~~a~~aL~~l~~~~~~~ 194 (528)
T 4b8j_A 115 QSGVVPRFVQFLTREDFPQLQFEAAWALTNIASGTSENTKVVIDHGAVPIFVKLLGSSSDDVREQAVWALGNVAGDSPKC 194 (528)
T ss_dssp HTTCHHHHHHHHTCTTCHHHHHHHHHHHHHHHTSCHHHHHHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHHHTCHHH
T ss_pred HCCCHHHHHHHhCCCCCHHHHHHHHHHHHHHhCCCHHHHHHHHhCCcHHHHHHHhcCCCHHHHHHHHHHHHHHhCCChhh
Confidence 4578999999998876 6777777666 5655 4456678889999999999999999999999999999998 4777
Q ss_pred HHHHHHcCCHHHHHHHHccCCCHHHHHHHHHHHHHhhcCchhHHHHHhcCccHHHHHhhcCCCCHHHHHHHHHHHHHHhc
Q 006114 441 QEKIVEEGGLDALLLLLRTSQNTTILRVASGAIANLAMNEMNQGLIMSRGGGQLLAKTASKTDDPQTLRMVAGALANLCG 520 (660)
Q Consensus 441 ~~~Ive~GgI~~Lv~LL~~s~d~~v~~~Aa~AL~nLA~~~~n~~~Ive~g~I~~Ll~LL~~s~d~~v~~~Aa~aLanLa~ 520 (660)
+..+...|++++|+.+|..++++.++..|+++|++|+.+.......+..|++|.|+.++.+ +++.++..|+++|++|+.
T Consensus 195 ~~~i~~~g~l~~Ll~lL~~~~~~~v~~~a~~~L~~L~~~~~~~~~~~~~~~l~~L~~lL~~-~~~~v~~~a~~aL~~l~~ 273 (528)
T 4b8j_A 195 RDLVLANGALLPLLAQLNEHTKLSMLRNATWTLSNFCRGKPQPSFEQTRPALPALARLIHS-NDEEVLTDACWALSYLSD 273 (528)
T ss_dssp HHHHHHTTCHHHHHHTCCTTCCHHHHHHHHHHHHHHHCSSSCCCHHHHTTHHHHHHHHTTC-CCHHHHHHHHHHHHHHTS
T ss_pred HHHHHHCCcHHHHHHHHhcCCCHHHHHHHHHHHHHHHcCCCCCcHHHHHHHHHHHHHHHCC-CCHHHHHHHHHHHHHHHc
Confidence 8999999999999999966789999999999999999885545555668999999999964 789999999999999995
Q ss_pred Ch-hHHHHHHhccHHHHHHHHhcCCCHHHHHHHHHHHHHhhccchhhhhhcchhhhHHHhhcChHHHHHHhhcCC-CHHH
Q 006114 521 NE-KLHTMLEEDGAIKALLAMVRSGNIDVIAQVARGLANFAKCESRAIVQGQRKGRSHLMEDSALEWLIANSKTN-SAST 598 (660)
Q Consensus 521 ~~-~~r~~iv~~G~V~~Lv~lL~s~~~~v~~~Al~aLanLA~~~~~~~aq~~~e~r~~Li~~G~v~~Lv~lL~s~-d~~v 598 (660)
.+ .....++..|+++.|+.++.++++.++..|+++|+||+.+++ .....+++.|+++.|+.++.+. ++.+
T Consensus 274 ~~~~~~~~~~~~g~v~~Lv~lL~~~~~~v~~~a~~~L~nl~~~~~--------~~~~~~~~~~~l~~L~~lL~~~~~~~v 345 (528)
T 4b8j_A 274 GTNDKIQAVIEAGVCPRLVELLLHPSPSVLIPALRTVGNIVTGDD--------AQTQCIIDHQALPCLLSLLTQNLKKSI 345 (528)
T ss_dssp SCHHHHHHHHHTTCHHHHHHHTTCSCHHHHHHHHHHHHHHTTSCH--------HHHHHHHTTTHHHHHHHHHHSCCCHHH
T ss_pred CCHHHHHHHHHcCHHHHHHHHHcCCChhHHHHHHHHHHHHHcCCH--------HHHHHHHHhhhHHHHHHHHcCCCcHHH
Confidence 54 445678899999999999999999999999999999997643 4556688899999999999998 9999
Q ss_pred HHHHHHHHHHhhcCC-ccHHHHHhcCcHHHHHHHHhcCChHHHHHHHHHHHh
Q 006114 599 RRHVELALCHLAQNE-DNARDFISRGGAKELVQISIESSREDIRNLAKKTMK 649 (660)
Q Consensus 599 r~~Aa~AL~nLa~~~-e~~~~Ive~G~l~~Lv~lL~s~s~~~ir~~A~~~L~ 649 (660)
+..|+|+|++|+.++ .....++..|+++.|+.++.+++ ..++..|..+|.
T Consensus 346 ~~~A~~~L~nl~~~~~~~~~~~~~~~~i~~L~~lL~~~~-~~v~~~a~~aL~ 396 (528)
T 4b8j_A 346 KKEACWTISNITAGNKDQIQAVINAGIIGPLVNLLQTAE-FDIKKEAAWAIS 396 (528)
T ss_dssp HHHHHHHHHHHHTSCHHHHHHHHHTTCHHHHHHHHHHSC-HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHCCCHHHHHHHHhcCC-HHHHHHHHHHHH
Confidence 999999999999755 56678889999999999999874 455555555553
No 19
>3l6x_A Catenin delta-1; catenin, armadillo, ARM, JMD, CE adhesion, complex, cell-CELL adhesion, ARVCF, delta-catenin DP120, JAC-1, cell membrane, membrane; 2.40A {Homo sapiens} PDB: 3l6y_A
Probab=99.92 E-value=1.5e-23 Score=238.03 Aligned_cols=282 Identities=19% Similarity=0.220 Sum_probs=225.1
Q ss_pred ccchhhhhhcccCCCccccccchhhh---hhcC--chhHHHHHhCCCHHHHHHhhCC-CCHHHHHHHHHHHHHhhCCchh
Q 006114 367 TKDYISKGSSRFGAPMSLQKSNPSRE---LSGQ--RATIAKICDEVGLPKILQLLTS-EDPDVQIHAVKVVANLAAEDIN 440 (660)
Q Consensus 367 ~~g~i~~l~~~L~~~~~~vr~~~~~~---laa~--~~~~~~I~e~ggI~~LV~LL~s-~d~~vr~~Aa~aL~nLa~~~en 440 (660)
..|+|+.++..|.+....++..+.++ ++.. ..+...|++.||||.||.+|.+ .+..++..|+++|++|+.++.+
T Consensus 88 ~~G~Ip~LV~LL~s~~~~vq~~Aa~AL~nLa~~~~~~nk~~I~~~GaIp~LV~LL~s~~~~~~~e~aa~aL~nLS~~~~~ 167 (584)
T 3l6x_A 88 KLKGIPVLVGLLDHPKKEVHLGACGALKNISFGRDQDNKIAIKNCDGVPALVRLLRKARDMDLTEVITGTLWNLSSHDSI 167 (584)
T ss_dssp HTTHHHHHHHGGGCSSHHHHHHHHHHHHHHTSSSCHHHHHHHHHTTHHHHHHHHHHHCCSHHHHHHHHHHHHHHTTSGGG
T ss_pred HcCCcHHHHHHHCCCCHHHHHHHHHHHHHHHccCCHHHHHHHHHcCCHHHHHHHHcCCCCHHHHHHHHHHHHHHhCCchh
Confidence 45899999999999988898888887 6764 6788889999999999999996 6889999999999999999999
Q ss_pred HHHHHHcCCHHHHHHHHc-----------------cCCCHHHHHHHHHHHHHhhcC-chhHHHHHhcCc-cHHHHHhhc-
Q 006114 441 QEKIVEEGGLDALLLLLR-----------------TSQNTTILRVASGAIANLAMN-EMNQGLIMSRGG-GQLLAKTAS- 500 (660)
Q Consensus 441 ~~~Ive~GgI~~Lv~LL~-----------------~s~d~~v~~~Aa~AL~nLA~~-~~n~~~Ive~g~-I~~Ll~LL~- 500 (660)
+..|+. ||||+|+.+|. +..++.++.+|+++|+||+.+ +.++..|++.+| ++.|+.++.
T Consensus 168 k~~I~~-~alp~Lv~LL~~p~sg~~~~~~~~~k~~~~~d~~V~~nAa~~L~NLs~~~~~~R~~i~~~~Gli~~LV~~L~~ 246 (584)
T 3l6x_A 168 KMEIVD-HALHALTDEVIIPHSGWEREPNEDCKPRHIEWESVLTNTAGCLRNVSSERSEARRKLRECDGLVDALIFIVQA 246 (584)
T ss_dssp HHHHHH-HTHHHHHHHTHHHHHCCC----------CCCCHHHHHHHHHHHHHHTSSCHHHHHHHHHSTTHHHHHHHHHHH
T ss_pred hHHHHh-ccHHHHHHHHhcccccccccccccccccccccHHHHHHHHHHHHHHhcCCHHHHHHHHHcCCcHHHHHHHHHH
Confidence 999995 68999999871 234689999999999999987 455777777433 445555432
Q ss_pred ------------------------------------------------------------------------CCCCHHHH
Q 006114 501 ------------------------------------------------------------------------KTDDPQTL 508 (660)
Q Consensus 501 ------------------------------------------------------------------------~s~d~~v~ 508 (660)
.+.++.++
T Consensus 247 ~~~~~~~~~~~~enav~aL~NLs~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~Gve~L~~~~~v~~Ll~LL~~s~~~~v~ 326 (584)
T 3l6x_A 247 EIGQKDSDSKLVENCVCLLRNLSYQVHREIPQAERYQEAAPNVANNTGTSPARGYELLFQPEVVRIYISLLKESKTPAIL 326 (584)
T ss_dssp HHHTTCCSCHHHHHHHHHHHHHHTTHHHHSTTCCC--------------CCCCGGGGGGSHHHHHHHHHHHHHCCCHHHH
T ss_pred hhcccCccHHHHHHHHHHHHHhhccccccccchhhhhhhcccccccccccCchhHHHHhcccHHHHHHHHHccCCCHHHH
Confidence 23356777
Q ss_pred HHHHHHHHHHhcCh-----hHHHHHHhccHHHHHHHHhcCCCHHHHHHHHHHHHHhhccchhhhhhcchhhhHHHhhcCh
Q 006114 509 RMVAGALANLCGNE-----KLHTMLEEDGAIKALLAMVRSGNIDVIAQVARGLANFAKCESRAIVQGQRKGRSHLMEDSA 583 (660)
Q Consensus 509 ~~Aa~aLanLa~~~-----~~r~~iv~~G~V~~Lv~lL~s~~~~v~~~Al~aLanLA~~~~~~~aq~~~e~r~~Li~~G~ 583 (660)
..|+|||+|||... ..+..+...||+|.|+.+|.++++.++..|+++|+||+.+. ..+..| ..|+
T Consensus 327 E~Aa~AL~nL~ag~~~~~~~~~~~v~~~~glp~Lv~LL~s~~~~v~~~A~~aL~nLs~~~---------~~~~~I-~~g~ 396 (584)
T 3l6x_A 327 EASAGAIQNLCAGRWTYGRYIRSALRQEKALSAIADLLTNEHERVVKAASGALRNLAVDA---------RNKELI-GKHA 396 (584)
T ss_dssp HHHHHHHHHHHSSCSHHHHHHHHHHTSHHHHHHHHHGGGCSCHHHHHHHHHHHHHHHTTC---------SCHHHH-HHHH
T ss_pred HHHHHHHHHHHcCCccccHHHHHHHHHcCcHHHHHHHHcCCCHHHHHHHHHHHHHHhCCh---------hHHHHH-HhCC
Confidence 88888898887432 33445556799999999999999999999999999999763 234444 7899
Q ss_pred HHHHHHhhcCC--------CHHHHHHHHHHHHHhhc-CCccHHHHHhcCcHHHHHHHHhcC-ChHHHHHHHH---HHHhc
Q 006114 584 LEWLIANSKTN--------SASTRRHVELALCHLAQ-NEDNARDFISRGGAKELVQISIES-SREDIRNLAK---KTMKS 650 (660)
Q Consensus 584 v~~Lv~lL~s~--------d~~vr~~Aa~AL~nLa~-~~e~~~~Ive~G~l~~Lv~lL~s~-s~~~ir~~A~---~~L~~ 650 (660)
+|.|+.+|.+. +..+...|+++|+||+. ++.++..|++.|+|++|+.++.+. ..+.+...|. ..|-.
T Consensus 397 ip~LV~LL~~~~~~~~~~~s~~v~~~a~~tL~NL~a~~~~~~~~I~~~g~I~~Lv~LL~s~~~~~~v~k~Aa~vL~nl~~ 476 (584)
T 3l6x_A 397 IPNLVKNLPGGQQNSSWNFSEDTVISILNTINEVIAENLEAAKKLRETQGIEKLVLINKSGNRSEKEVRAAALVLQTIWG 476 (584)
T ss_dssp HHHHHHTSSSSSCSGGGTCCHHHHHHHHHHHHHHHTTCHHHHHHHHHTTHHHHHHHHHTCSSSCHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHhcCCcccccccchHHHHHHHHHHHHHHhcCCHHHHHHHHHCCChHHHHHHHhCCCCChHHHHHHHHHHHHHHc
Confidence 99999999876 46789999999999975 568999999999999999999986 3445555555 44456
Q ss_pred Ccchhhhhh
Q 006114 651 NPRLQADTH 659 (660)
Q Consensus 651 ~p~~~~e~~ 659 (660)
+..++..++
T Consensus 477 ~~elr~~~k 485 (584)
T 3l6x_A 477 YKELRKPLE 485 (584)
T ss_dssp SHHHHHHHH
T ss_pred CHHHHHHHH
Confidence 666666554
No 20
>4db6_A Armadillo repeat protein; solenoid repeat, armadillo repeat motif, de novo protein; 1.80A {Synthetic construct} PDB: 4db9_A 4dba_A
Probab=99.92 E-value=3.5e-23 Score=202.54 Aligned_cols=200 Identities=24% Similarity=0.313 Sum_probs=180.4
Q ss_pred HHhCCCHHHHHHhhCCCCHHHHHHHHHHHHHhhC-CchhHHHHHHcCCHHHHHHHHccCCCHHHHHHHHHHHHHhhc-Cc
Q 006114 403 ICDEVGLPKILQLLTSEDPDVQIHAVKVVANLAA-EDINQEKIVEEGGLDALLLLLRTSQNTTILRVASGAIANLAM-NE 480 (660)
Q Consensus 403 I~e~ggI~~LV~LL~s~d~~vr~~Aa~aL~nLa~-~~en~~~Ive~GgI~~Lv~LL~~s~d~~v~~~Aa~AL~nLA~-~~ 480 (660)
....|+.|.|+.+|.++++.++..|+++|++|+. ++.++..+++.|++|.|+.+|. ++++.++..|+++|+||+. ++
T Consensus 8 ~~~~~~~~~l~~LL~s~~~~v~~~a~~~L~~l~~~~~~~~~~i~~~g~i~~L~~lL~-~~~~~v~~~a~~~L~~l~~~~~ 86 (210)
T 4db6_A 8 HHHGSELPQMVQQLNSPDQQELQSALRKLSQIASGGNEQIQAVIDAGALPALVQLLS-SPNEQILQEALWALSNIASGGN 86 (210)
T ss_dssp -----CHHHHHHHTTCSCHHHHHHHHHHHHHHHTSCHHHHHHHHHTTHHHHHHHHTT-CSCHHHHHHHHHHHHHHTTSCH
T ss_pred ccccchhHHHHHHhcCCCHHHHHHHHHHHHHHHcCCHHHHHHHHHcCCHHHHHHHHc-CCCHHHHHHHHHHHHHHhcCCc
Confidence 3456889999999999999999999999999996 7888999999999999999998 6799999999999999995 58
Q ss_pred hhHHHHHhcCccHHHHHhhcCCCCHHHHHHHHHHHHHHh-cChhHHHHHHhccHHHHHHHHhcCCCHHHHHHHHHHHHHh
Q 006114 481 MNQGLIMSRGGGQLLAKTASKTDDPQTLRMVAGALANLC-GNEKLHTMLEEDGAIKALLAMVRSGNIDVIAQVARGLANF 559 (660)
Q Consensus 481 ~n~~~Ive~g~I~~Ll~LL~~s~d~~v~~~Aa~aLanLa-~~~~~r~~iv~~G~V~~Lv~lL~s~~~~v~~~Al~aLanL 559 (660)
.++..+++.|++|.|+.+|.+ +++.++..|+++|+||+ .++..+..+++.|+++.|+.++.++++.++..|+++|+||
T Consensus 87 ~~~~~i~~~g~i~~L~~lL~~-~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~ll~~~~~~v~~~a~~aL~~l 165 (210)
T 4db6_A 87 EQIQAVIDAGALPALVQLLSS-PNEQILQEALWALSNIASGGNEQIQAVIDAGALPALVQLLSSPNEQILQEALWALSNI 165 (210)
T ss_dssp HHHHHHHHTTCHHHHHHHTTC-SCHHHHHHHHHHHHHHTTSCHHHHHHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHCCCHHHHHHHHcC-CcHHHHHHHHHHHHHHHcCCHHHHHHHHHcCcHHHHHHHHcCCCHHHHHHHHHHHHHH
Confidence 889999999999999999975 78999999999999999 6777888899999999999999999999999999999999
Q ss_pred hccchhhhhhcchhhhHHHhhcChHHHHHHhhcCCCHHHHHHHHHHHHHhhcC
Q 006114 560 AKCESRAIVQGQRKGRSHLMEDSALEWLIANSKTNSASTRRHVELALCHLAQN 612 (660)
Q Consensus 560 A~~~~~~~aq~~~e~r~~Li~~G~v~~Lv~lL~s~d~~vr~~Aa~AL~nLa~~ 612 (660)
+..+ +..+..+.+.|+++.|+.++.+.++.++..|+++|.+|+.+
T Consensus 166 ~~~~--------~~~~~~~~~~g~i~~L~~ll~~~~~~v~~~a~~aL~~l~~~ 210 (210)
T 4db6_A 166 ASGG--------NEQKQAVKEAGALEKLEQLQSHENEKIQKEAQEALEKLQSH 210 (210)
T ss_dssp HTSC--------HHHHHHHHHTTHHHHHHHGGGCSCHHHHHHHHHHHHHHCC-
T ss_pred HcCC--------cHHHHHHHHCCCHHHHHHHHhCCCHHHHHHHHHHHHHHhcC
Confidence 9764 34667788999999999999999999999999999999864
No 21
>3tpo_A Importin subunit alpha-2; nuclear import, protein transport; 2.10A {Mus musculus} PDB: 1qgk_B 1qgr_B
Probab=99.91 E-value=2.4e-23 Score=234.10 Aligned_cols=273 Identities=12% Similarity=0.155 Sum_probs=231.9
Q ss_pred cccchhhhhhcccCCCccccccchhhh---hhcCchh-HHHHHhCCCHHHHHHhhCCCC-----HHHHHHHHHHHHHhhC
Q 006114 366 YTKDYISKGSSRFGAPMSLQKSNPSRE---LSGQRAT-IAKICDEVGLPKILQLLTSED-----PDVQIHAVKVVANLAA 436 (660)
Q Consensus 366 ~~~g~i~~l~~~L~~~~~~vr~~~~~~---laa~~~~-~~~I~e~ggI~~LV~LL~s~d-----~~vr~~Aa~aL~nLa~ 436 (660)
.+.|+++.++..+.++...++..++++ ++.+++. ...++..|+++.|+.+|..++ ..+...++++|.+++.
T Consensus 159 v~~Gaip~Lv~LL~s~~~~v~e~A~~aL~nLa~~~~~~r~~i~~~g~i~~Ll~lL~~~~~~~~~~~~~~~a~~~L~nl~~ 238 (529)
T 3tpo_A 159 VDGGAIPAFISLLASPHAHISEQAVWALGNIAGAGSAFRDLVIKHGAIDPLLALLAVPDLSTLACGYLRNLTWTLSNLCR 238 (529)
T ss_dssp HHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHHTTCHHHHHHHHHTTCHHHHHHTTCSSCGGGSCHHHHHHHHHHHHHHHC
T ss_pred HHCCCHHHHHHHHcCCCHHHHHHHHHHHHHHhccCHHHHHHHHHcCCcHHHHHHHhccchhHhHHHHHHHHHHHHHHHHh
Confidence 456899999999999999999988887 6777655 455779999999999998653 4578899999999998
Q ss_pred Cchh-HHHHHHcCCHHHHHHHHccCCCHHHHHHHHHHHHHhhcCc-hhHHHHHhcCccHHHHHhhcCCCCHHHHHHHHHH
Q 006114 437 EDIN-QEKIVEEGGLDALLLLLRTSQNTTILRVASGAIANLAMNE-MNQGLIMSRGGGQLLAKTASKTDDPQTLRMVAGA 514 (660)
Q Consensus 437 ~~en-~~~Ive~GgI~~Lv~LL~~s~d~~v~~~Aa~AL~nLA~~~-~n~~~Ive~g~I~~Ll~LL~~s~d~~v~~~Aa~a 514 (660)
+... .......|++|.|+.+|. ++++.++..|+++|++|+.++ +....++..|++|.|+.+|.+ +++.++..|+++
T Consensus 239 ~~~~~~~~~~~~~~lp~L~~LL~-~~~~~v~~~a~~aL~~l~~~~~~~~~~v~~~g~i~~Lv~lL~~-~~~~v~~~a~~a 316 (529)
T 3tpo_A 239 NKNPAPPLDAVEQILPTLVRLLH-HNDPEVLADSCWAISYLTDGPNERIEMVVKKGVVPQLVKLLGA-TELPIVTPALRA 316 (529)
T ss_dssp CCTTCCCHHHHHHHHHHHHHHTT-SSCHHHHHHHHHHHHHHHSSCHHHHHHHHTTTCHHHHHHHHTC-SCHHHHHHHHHH
T ss_pred cccchhhHHHHhhHHHHHHHHhc-CCcHHHHHHHHHHHHHhhhhhhhhHHHHHhccchHHHHHHhcC-CChhHHHHHHHH
Confidence 6443 333445678999999997 789999999999999999874 556677889999999999974 789999999999
Q ss_pred HHHHh-cChhHHHHHHhccHHHHHHHHhcCCCHHHHHHHHHHHHHhhccchhhhhhcchhhhHHHhhcChHHHHHHhhcC
Q 006114 515 LANLC-GNEKLHTMLEEDGAIKALLAMVRSGNIDVIAQVARGLANFAKCESRAIVQGQRKGRSHLMEDSALEWLIANSKT 593 (660)
Q Consensus 515 LanLa-~~~~~r~~iv~~G~V~~Lv~lL~s~~~~v~~~Al~aLanLA~~~~~~~aq~~~e~r~~Li~~G~v~~Lv~lL~s 593 (660)
|+||+ +++.....+++.|+++.|+.++.++++.++..|+++|+||+.+++ ..+..+++.|++|+|+.++.+
T Consensus 317 L~nl~~~~~~~~~~i~~~g~l~~L~~LL~~~~~~i~~~a~~aL~nl~~~~~--------~~~~~v~~~g~i~~Lv~lL~~ 388 (529)
T 3tpo_A 317 IGNIVTGTDEQTQKVIDAGALAVFPSLLTNPKTNIQKEATWTMSNITAGRQ--------DQIQQVVNHGLVPFLVGVLSK 388 (529)
T ss_dssp HHHHTTSCHHHHHHHHHTTGGGGHHHHTTCSSHHHHHHHHHHHHHHHTSCH--------HHHHHHHHTTHHHHHHHHHHS
T ss_pred HHHHHccchHHHHHHhhcccHHHHHHHHcCCCHHHHHHHHHHHHHHhcccH--------HHHHHHHhcCcHHHHHHHhcC
Confidence 99997 678888899999999999999999999999999999999997653 456678899999999999999
Q ss_pred CCHHHHHHHHHHHHHhhcC--CccHHHHHhcCcHHHHHHHHhcCChHHHHHHHHHHHh
Q 006114 594 NSASTRRHVELALCHLAQN--EDNARDFISRGGAKELVQISIESSREDIRNLAKKTMK 649 (660)
Q Consensus 594 ~d~~vr~~Aa~AL~nLa~~--~e~~~~Ive~G~l~~Lv~lL~s~s~~~ir~~A~~~L~ 649 (660)
.+..++..|+|||+|++.+ .+....+++.|++++|+.++.+.++. +...+..+|.
T Consensus 389 ~~~~v~~~A~~aL~nl~~~~~~~~~~~l~~~g~i~~L~~LL~~~d~~-i~~~~L~aL~ 445 (529)
T 3tpo_A 389 ADFKTQKAAAWAITNYTSGGTVEQIVYLVHCGIIEPLMNLLSAKDTK-IIQVILDAIS 445 (529)
T ss_dssp SCHHHHHHHHHHHHHHHHHSCHHHHHHHHHTTCHHHHHHGGGCSCHH-HHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHHHcCCCHHHHHHHHHCcCHHHHHHHhcCCCHH-HHHHHHHHHH
Confidence 9999999999999999864 36778899999999999999987654 4444444443
No 22
>1wa5_B Importin alpha subunit; nuclear transport/complex, nuclear transport, exportin, RAN GTPase, protein transport; HET: GTP; 2.0A {Saccharomyces cerevisiae} SCOP: a.118.1.1 PDB: 1un0_A 2c1t_A 1bk5_A 1ee5_A 1bk6_A 1ee4_A
Probab=99.91 E-value=1.4e-22 Score=226.84 Aligned_cols=271 Identities=14% Similarity=0.160 Sum_probs=232.1
Q ss_pred ccchhhhhhcccCCC-ccccccchhhh---hhcCc-hhHHHHHhCCCHHHHHHhhCCCCHHHHHHHHHHHHHhhCC-chh
Q 006114 367 TKDYISKGSSRFGAP-MSLQKSNPSRE---LSGQR-ATIAKICDEVGLPKILQLLTSEDPDVQIHAVKVVANLAAE-DIN 440 (660)
Q Consensus 367 ~~g~i~~l~~~L~~~-~~~vr~~~~~~---laa~~-~~~~~I~e~ggI~~LV~LL~s~d~~vr~~Aa~aL~nLa~~-~en 440 (660)
..|.++.++..+.+. .+.++..++++ ++... .....++..|++|.|+.+|.++++.++..|+++|++|+.+ +.+
T Consensus 128 ~~g~i~~Lv~~L~~~~~~~v~~~A~~~L~~l~~~~~~~~~~~~~~g~i~~Lv~lL~~~~~~vr~~A~~aL~~l~~~~~~~ 207 (530)
T 1wa5_B 128 QAGVVPRLVEFMRENQPEMLQLEAAWALTNIASGTSAQTKVVVDADAVPLFIQLLYTGSVEVKEQAIWALGNVAGDSTDY 207 (530)
T ss_dssp HTTCHHHHHHTTSTTSCHHHHHHHHHHHHHHTTSCHHHHHHHHHTTCHHHHHHHHHHCCHHHHHHHHHHHHHHHTTCHHH
T ss_pred HCCCHHHHHHHhCCCCCHHHHHHHHHHHHHHhCCCHHHHHHHHHCCCHHHHHHHHcCCCHHHHHHHHHHHHHHhCCCccc
Confidence 357899999999886 67777777766 55544 3556677899999999999999999999999999999984 778
Q ss_pred HHHHHHcCCHHHHHHHHccCCCHHHHHHHHHHHHHhhcCc-hhHHHHHhcCccHHHHHhhcCCCCHHHHHHHHHHHHHHh
Q 006114 441 QEKIVEEGGLDALLLLLRTSQNTTILRVASGAIANLAMNE-MNQGLIMSRGGGQLLAKTASKTDDPQTLRMVAGALANLC 519 (660)
Q Consensus 441 ~~~Ive~GgI~~Lv~LL~~s~d~~v~~~Aa~AL~nLA~~~-~n~~~Ive~g~I~~Ll~LL~~s~d~~v~~~Aa~aLanLa 519 (660)
+..++..|+++.|+.+|. ++++.++..|+++|++|+.+. +........|++|.|+.++.+ +++.++..|+++|.+|+
T Consensus 208 ~~~~~~~~~l~~L~~ll~-~~~~~v~~~a~~~L~~L~~~~~~~~~~~~~~~~l~~L~~lL~~-~d~~v~~~a~~~L~~L~ 285 (530)
T 1wa5_B 208 RDYVLQCNAMEPILGLFN-SNKPSLIRTATWTLSNLCRGKKPQPDWSVVSQALPTLAKLIYS-MDTETLVDACWAISYLS 285 (530)
T ss_dssp HHHHHHTTCHHHHHHGGG-SCCHHHHHHHHHHHHHHHCCSSSCCCHHHHGGGHHHHHHHTTC-CCHHHHHHHHHHHHHHH
T ss_pred hHHHHHcCcHHHHHHHhc-cCCHHHHHHHHHHHHHHhCCCCCCCcHHHHHhHHHHHHHHHcC-CCHHHHHHHHHHHHHHh
Confidence 889999999999999998 589999999999999999874 555566678999999999975 78999999999999999
Q ss_pred -cChhHHHHHHhccHHHHHHHHhcCCCHHHHHHHHHHHHHhhccchhhhhhcchhhhHHHhhcChHHHHHHhhcCCCHHH
Q 006114 520 -GNEKLHTMLEEDGAIKALLAMVRSGNIDVIAQVARGLANFAKCESRAIVQGQRKGRSHLMEDSALEWLIANSKTNSAST 598 (660)
Q Consensus 520 -~~~~~r~~iv~~G~V~~Lv~lL~s~~~~v~~~Al~aLanLA~~~~~~~aq~~~e~r~~Li~~G~v~~Lv~lL~s~d~~v 598 (660)
..+.....+++.|+++.|+.++.++++.++..|+++|++|+..++ .....++..|+++.|+.++.+.++.+
T Consensus 286 ~~~~~~~~~~~~~~~v~~Lv~lL~~~~~~v~~~a~~~L~~l~~~~~--------~~~~~~~~~~~l~~L~~lL~~~~~~v 357 (530)
T 1wa5_B 286 DGPQEAIQAVIDVRIPKRLVELLSHESTLVQTPALRAVGNIVTGND--------LQTQVVINAGVLPALRLLLSSPKENI 357 (530)
T ss_dssp SSCHHHHHHHHHTTCHHHHHHGGGCSCHHHHHHHHHHHHHHTTSCH--------HHHHHHHHTTHHHHHHHHTTCSCHHH
T ss_pred CCCHHHHHHHHhcCcHHHHHHHHCCCChhhHHHHHHHHHHHHcCCH--------HHHHHHHHcchHHHHHHHHcCCCHHH
Confidence 456778888899999999999999999999999999999997643 34456778899999999999999999
Q ss_pred HHHHHHHHHHhhcCC-ccHHHHHhcCcHHHHHHHHhcCChHHHHHHHHHHH
Q 006114 599 RRHVELALCHLAQNE-DNARDFISRGGAKELVQISIESSREDIRNLAKKTM 648 (660)
Q Consensus 599 r~~Aa~AL~nLa~~~-e~~~~Ive~G~l~~Lv~lL~s~s~~~ir~~A~~~L 648 (660)
+..|+|+|++|+.+. .....++..|+++.|+.++.+++. .++..|..+|
T Consensus 358 r~~A~~aL~~l~~~~~~~~~~~~~~~~l~~L~~lL~~~~~-~v~~~a~~aL 407 (530)
T 1wa5_B 358 KKEACWTISNITAGNTEQIQAVIDANLIPPLVKLLEVAEY-KTKKEACWAI 407 (530)
T ss_dssp HHHHHHHHHHHTTSCHHHHHHHHHTTCHHHHHHHHHHSCH-HHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHCCCHHHHHHHHhcCCH-HHHHHHHHHH
Confidence 999999999999754 666778899999999999987654 4555555555
No 23
>1wa5_B Importin alpha subunit; nuclear transport/complex, nuclear transport, exportin, RAN GTPase, protein transport; HET: GTP; 2.0A {Saccharomyces cerevisiae} SCOP: a.118.1.1 PDB: 1un0_A 2c1t_A 1bk5_A 1ee5_A 1bk6_A 1ee4_A
Probab=99.91 E-value=1.8e-22 Score=225.86 Aligned_cols=273 Identities=12% Similarity=0.178 Sum_probs=231.6
Q ss_pred ccchhhhhhcccCCCccccccchhhh---h-hc-CchhHHHHHhCCCHHHHHHhhCCC-CHHHHHHHHHHHHHhhC-Cch
Q 006114 367 TKDYISKGSSRFGAPMSLQKSNPSRE---L-SG-QRATIAKICDEVGLPKILQLLTSE-DPDVQIHAVKVVANLAA-EDI 439 (660)
Q Consensus 367 ~~g~i~~l~~~L~~~~~~vr~~~~~~---l-aa-~~~~~~~I~e~ggI~~LV~LL~s~-d~~vr~~Aa~aL~nLa~-~~e 439 (660)
..+.++.++..+.+..+.++..++.. + +. .++.+..++..|++|.|+.+|.++ ++.++..|+++|++|+. .++
T Consensus 85 ~~~~i~~lv~~L~s~~~~~~~~A~~~L~~ll~~~~~~~~~~~~~~g~i~~Lv~~L~~~~~~~v~~~A~~~L~~l~~~~~~ 164 (530)
T 1wa5_B 85 LQQELPQMTQQLNSDDMQEQLSATVKFRQILSREHRPPIDVVIQAGVVPRLVEFMRENQPEMLQLEAAWALTNIASGTSA 164 (530)
T ss_dssp --CCHHHHHHHHSCSSHHHHHHHHHHHHHHTCCSSSCSHHHHHHTTCHHHHHHTTSTTSCHHHHHHHHHHHHHHTTSCHH
T ss_pred hHHHHHHHHHHHcCCCHHHHHHHHHHHHHHhCCCCCccHHHHHHCCCHHHHHHHhCCCCCHHHHHHHHHHHHHHhCCCHH
Confidence 34668888888888777777666555 3 32 245677888999999999999987 89999999999999999 567
Q ss_pred hHHHHHHcCCHHHHHHHHccCCCHHHHHHHHHHHHHhhcC-chhHHHHHhcCccHHHHHhhcCCCCHHHHHHHHHHHHHH
Q 006114 440 NQEKIVEEGGLDALLLLLRTSQNTTILRVASGAIANLAMN-EMNQGLIMSRGGGQLLAKTASKTDDPQTLRMVAGALANL 518 (660)
Q Consensus 440 n~~~Ive~GgI~~Lv~LL~~s~d~~v~~~Aa~AL~nLA~~-~~n~~~Ive~g~I~~Ll~LL~~s~d~~v~~~Aa~aLanL 518 (660)
++..++..|++|.|+.+|. ++++.++..|+++|++|+.+ +.++..++..|+++.|+.++.+ .++.++..|+|+|++|
T Consensus 165 ~~~~~~~~g~i~~Lv~lL~-~~~~~vr~~A~~aL~~l~~~~~~~~~~~~~~~~l~~L~~ll~~-~~~~v~~~a~~~L~~L 242 (530)
T 1wa5_B 165 QTKVVVDADAVPLFIQLLY-TGSVEVKEQAIWALGNVAGDSTDYRDYVLQCNAMEPILGLFNS-NKPSLIRTATWTLSNL 242 (530)
T ss_dssp HHHHHHHTTCHHHHHHHHH-HCCHHHHHHHHHHHHHHHTTCHHHHHHHHHTTCHHHHHHGGGS-CCHHHHHHHHHHHHHH
T ss_pred HHHHHHHCCCHHHHHHHHc-CCCHHHHHHHHHHHHHHhCCCccchHHHHHcCcHHHHHHHhcc-CCHHHHHHHHHHHHHH
Confidence 8888999999999999998 67999999999999999987 7888899999999999999986 7899999999999999
Q ss_pred hcCh-hHHHHHHhccHHHHHHHHhcCCCHHHHHHHHHHHHHhhccchhhhhhcchhhhHHHhhcChHHHHHHhhcCCCHH
Q 006114 519 CGNE-KLHTMLEEDGAIKALLAMVRSGNIDVIAQVARGLANFAKCESRAIVQGQRKGRSHLMEDSALEWLIANSKTNSAS 597 (660)
Q Consensus 519 a~~~-~~r~~iv~~G~V~~Lv~lL~s~~~~v~~~Al~aLanLA~~~~~~~aq~~~e~r~~Li~~G~v~~Lv~lL~s~d~~ 597 (660)
+.+. .........|+++.|+.++.++++.++..|+++|++|+...+ .....++..|+++.|+.++.+.++.
T Consensus 243 ~~~~~~~~~~~~~~~~l~~L~~lL~~~d~~v~~~a~~~L~~L~~~~~--------~~~~~~~~~~~v~~Lv~lL~~~~~~ 314 (530)
T 1wa5_B 243 CRGKKPQPDWSVVSQALPTLAKLIYSMDTETLVDACWAISYLSDGPQ--------EAIQAVIDVRIPKRLVELLSHESTL 314 (530)
T ss_dssp HCCSSSCCCHHHHGGGHHHHHHHTTCCCHHHHHHHHHHHHHHHSSCH--------HHHHHHHHTTCHHHHHHGGGCSCHH
T ss_pred hCCCCCCCcHHHHHhHHHHHHHHHcCCCHHHHHHHHHHHHHHhCCCH--------HHHHHHHhcCcHHHHHHHHCCCChh
Confidence 9554 444456668999999999999999999999999999997643 3455678899999999999999999
Q ss_pred HHHHHHHHHHHhhcCC-ccHHHHHhcCcHHHHHHHHhcCChHHHHHHHHHHHhc
Q 006114 598 TRRHVELALCHLAQNE-DNARDFISRGGAKELVQISIESSREDIRNLAKKTMKS 650 (660)
Q Consensus 598 vr~~Aa~AL~nLa~~~-e~~~~Ive~G~l~~Lv~lL~s~s~~~ir~~A~~~L~~ 650 (660)
++..|+++|++|+.+. .....++..|+++.|+.++.+++ ..++..|..+|.+
T Consensus 315 v~~~a~~~L~~l~~~~~~~~~~~~~~~~l~~L~~lL~~~~-~~vr~~A~~aL~~ 367 (530)
T 1wa5_B 315 VQTPALRAVGNIVTGNDLQTQVVINAGVLPALRLLLSSPK-ENIKKEACWTISN 367 (530)
T ss_dssp HHHHHHHHHHHHTTSCHHHHHHHHHTTHHHHHHHHTTCSC-HHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHcCCHHHHHHHHHcchHHHHHHHHcCCC-HHHHHHHHHHHHH
Confidence 9999999999999765 55677788999999999998764 5566666666643
No 24
>2jdq_A Importin alpha-1 subunit; transport, PB2 subunit, nuclear protein, protein transport, armadillo repeats; 2.2A {Homo sapiens} PDB: 3tj3_A
Probab=99.90 E-value=3.9e-22 Score=216.02 Aligned_cols=269 Identities=16% Similarity=0.164 Sum_probs=226.9
Q ss_pred chhhhhhcccCCC-ccccccchhhh---hhcC-chhHHHHHhCCCHHHHHHhhCCCCHHHHHHHHHHHHHhhCC-chhHH
Q 006114 369 DYISKGSSRFGAP-MSLQKSNPSRE---LSGQ-RATIAKICDEVGLPKILQLLTSEDPDVQIHAVKVVANLAAE-DINQE 442 (660)
Q Consensus 369 g~i~~l~~~L~~~-~~~vr~~~~~~---laa~-~~~~~~I~e~ggI~~LV~LL~s~d~~vr~~Aa~aL~nLa~~-~en~~ 442 (660)
|.++.++..+.+. .+.++..+.+. ++.. ......++..|++|.|+.+|.++++.++..|+++|++|+.. +.++.
T Consensus 64 ~~i~~L~~~L~~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~lL~~~~~~vr~~a~~~L~~l~~~~~~~~~ 143 (450)
T 2jdq_A 64 GVVARFVEFLKRKENCTLQFESAWVLTNIASGNSLQTRIVIQAGAVPIFIELLSSEFEDVQEQAVWALGNIAGDSTMCRD 143 (450)
T ss_dssp THHHHHHHHHTCTTCHHHHHHHHHHHHHHHSSCHHHHHHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHHTTCHHHHH
T ss_pred CcHHHHHHHHCCCCCHHHHHHHHHHHHHHhcCCHHHHHHHHhCCCHHHHHHHHcCCCHHHHHHHHHHHHHHccCCHHHHH
Confidence 6788888888877 66777766665 4544 34556678899999999999999999999999999999994 67888
Q ss_pred HHHHcCCHHHHHHHHccCCCHHHHHHHHHHHHHhhcCc--hhHHHHHhcCccHHHHHhhcCCCCHHHHHHHHHHHHHHhc
Q 006114 443 KIVEEGGLDALLLLLRTSQNTTILRVASGAIANLAMNE--MNQGLIMSRGGGQLLAKTASKTDDPQTLRMVAGALANLCG 520 (660)
Q Consensus 443 ~Ive~GgI~~Lv~LL~~s~d~~v~~~Aa~AL~nLA~~~--~n~~~Ive~g~I~~Ll~LL~~s~d~~v~~~Aa~aLanLa~ 520 (660)
.++..|+++.|+.+|.+++++.++..|+++|++|+.+. .....++ .|++|.|+.++.+ +++.++..|+|+|.+|+.
T Consensus 144 ~~~~~~~i~~L~~~l~~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~-~~~l~~L~~~l~~-~~~~v~~~a~~~L~~l~~ 221 (450)
T 2jdq_A 144 YVLDCNILPPLLQLFSKQNRLTMTRNAVWALSNLCRGKSPPPEFAKV-SPCLNVLSWLLFV-SDTDVLADACWALSYLSD 221 (450)
T ss_dssp HHHHTTCHHHHHHHTTSCCCHHHHHHHHHHHHHHHCCSSSCCCGGGT-GGGHHHHHHHTTC-CCHHHHHHHHHHHHHHTS
T ss_pred HHHHCCCHHHHHHHhcCCCCHHHHHHHHHHHHHHhCCCCCCCCHHHH-HHHHHHHHHHHcc-CCHHHHHHHHHHHHHHHC
Confidence 89999999999999986678999999999999999763 3333333 8899999999974 789999999999999995
Q ss_pred -ChhHHHHHHhccHHHHHHHHhcCCCHHHHHHHHHHHHHhhccchhhhhhcchhhhHHHhhcChHHHHHHhhcCCCHHHH
Q 006114 521 -NEKLHTMLEEDGAIKALLAMVRSGNIDVIAQVARGLANFAKCESRAIVQGQRKGRSHLMEDSALEWLIANSKTNSASTR 599 (660)
Q Consensus 521 -~~~~r~~iv~~G~V~~Lv~lL~s~~~~v~~~Al~aLanLA~~~~~~~aq~~~e~r~~Li~~G~v~~Lv~lL~s~d~~vr 599 (660)
.++....++..|+++.|+.++.++++.++..|+++|++|+.+++ .....+++.|+++.|+.++.++++.++
T Consensus 222 ~~~~~~~~~~~~~~i~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~--------~~~~~~~~~~~l~~L~~ll~~~~~~vr 293 (450)
T 2jdq_A 222 GPNDKIQAVIDAGVCRRLVELLMHNDYKVVSPALRAVGNIVTGDD--------IQTQVILNCSALQSLLHLLSSPKESIK 293 (450)
T ss_dssp SSHHHHHHHHHTTTHHHHHHHTTCSCHHHHHHHHHHHHHHTTSCH--------HHHHHHHTTTHHHHHHHHTTCSSHHHH
T ss_pred CCcHHHHHHHHcCcHHHHHHHHCCCchhHHHHHHHHHHHHhhCCh--------HHHHHHHHCccHHHHHHHHcCCCHHHH
Confidence 56777888899999999999999999999999999999997653 334557788999999999999999999
Q ss_pred HHHHHHHHHhhcCC-ccHHHHHhcCcHHHHHHHHhcCChHHHHHHHHHHH
Q 006114 600 RHVELALCHLAQNE-DNARDFISRGGAKELVQISIESSREDIRNLAKKTM 648 (660)
Q Consensus 600 ~~Aa~AL~nLa~~~-e~~~~Ive~G~l~~Lv~lL~s~s~~~ir~~A~~~L 648 (660)
..|+++|++|+.+. .....++..|+++.|+.++.+++. .++..|..+|
T Consensus 294 ~~a~~~L~~l~~~~~~~~~~~~~~~~l~~L~~~l~~~~~-~v~~~a~~~L 342 (450)
T 2jdq_A 294 KEACWTISNITAGNRAQIQTVIDANIFPALISILQTAEF-RTRKEAAWAI 342 (450)
T ss_dssp HHHHHHHHHHTTSCHHHHHHHHHTTHHHHHHHHHHHSCH-HHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHCCCHHHHHHHHhcCCH-HHHHHHHHHH
Confidence 99999999999754 667778889999999999997654 4555555444
No 25
>3tt9_A Plakophilin-2; cell adhesion; 1.55A {Homo sapiens}
Probab=99.90 E-value=7.2e-23 Score=207.72 Aligned_cols=196 Identities=20% Similarity=0.271 Sum_probs=174.7
Q ss_pred CCHHHHHHhhCCCCH--HHHHHHHHHHHHhhC-CchhHHHHHHcCCHHHHHHHHccCCCHHHHHHHHHHHHHhhc-Cchh
Q 006114 407 VGLPKILQLLTSEDP--DVQIHAVKVVANLAA-EDINQEKIVEEGGLDALLLLLRTSQNTTILRVASGAIANLAM-NEMN 482 (660)
Q Consensus 407 ggI~~LV~LL~s~d~--~vr~~Aa~aL~nLa~-~~en~~~Ive~GgI~~Lv~LL~~s~d~~v~~~Aa~AL~nLA~-~~~n 482 (660)
-.+|.||.+|.++++ .++..|+++|.+|+. +++++..|++.||||+|+.+|. ++++.++..|+++|+||+. ++++
T Consensus 8 ~~i~~lV~lL~s~~~~~~~q~~Aa~~l~~L~~~~~~~r~~I~~~G~Ip~LV~lL~-s~~~~vq~~Aa~aL~nLa~~~~~n 86 (233)
T 3tt9_A 8 MTLERAVSMLEADHMLPSRISAAATFIQHECFQKSEARKRVNQLRGILKLLQLLK-VQNEDVQRAVCGALRNLVFEDNDN 86 (233)
T ss_dssp CCHHHHHHTCCSSCCCHHHHHHHHHHHHHHHHHCHHHHHHHHHTTHHHHHHHGGG-CCCHHHHHHHHHHHHHHHTTCHHH
T ss_pred ccHHHHHHHhCCCCchHHHHHHHHHHHHHHHcCCcHHHHHHHHcCCHHHHHHHHc-CCCHHHHHHHHHHHHHHHhCCHHH
Confidence 369999999999888 899999999999997 7889999999999999999998 7899999999999999998 4899
Q ss_pred HHHHHhcCccHHHHHhhcCCCCHHHHHHHHHHHHHHhcChhHHHHHHhccHHHHHHHHhc----------------CCCH
Q 006114 483 QGLIMSRGGGQLLAKTASKTDDPQTLRMVAGALANLCGNEKLHTMLEEDGAIKALLAMVR----------------SGNI 546 (660)
Q Consensus 483 ~~~Ive~g~I~~Ll~LL~~s~d~~v~~~Aa~aLanLa~~~~~r~~iv~~G~V~~Lv~lL~----------------s~~~ 546 (660)
+..|++.|+||+|+.+|..++++.++..|+++|+||+..+.++..|+. +++|+|+.++. +.++
T Consensus 87 k~~I~~~GaI~~Lv~lL~~~~~~~~~e~a~~aL~nLS~~~~~k~~i~~-~~i~~Lv~ll~~p~sG~~~~~~~~~~~~~~~ 165 (233)
T 3tt9_A 87 KLEVAELNGVPRLLQVLKQTRDLETKKQITGLLWNLSSNDKLKNLMIT-EALLTLTENIIIPFSGWPEGDYPKANGLLDF 165 (233)
T ss_dssp HHHHHHTTHHHHHHHHHHHCCCHHHHHHHHHHHHHHHTSGGGHHHHHH-HHHHHHCCCCCHHHHCCCGGGCCCCCTTCCH
T ss_pred HHHHHHcCCHHHHHHHHccCCCHHHHHHHHHHHHHHHcChhhHHHHHh-ccHHHHHHHHhccccCCcccccccccccchH
Confidence 999999999999999997667899999999999999999999999987 57999988652 1367
Q ss_pred HHHHHHHHHHHHhhccchhhhhhcchhhhHHHhhc-ChHHHHHHhhcC------CCHHHHHHHHHHHHHhhcC
Q 006114 547 DVIAQVARGLANFAKCESRAIVQGQRKGRSHLMED-SALEWLIANSKT------NSASTRRHVELALCHLAQN 612 (660)
Q Consensus 547 ~v~~~Al~aLanLA~~~~~~~aq~~~e~r~~Li~~-G~v~~Lv~lL~s------~d~~vr~~Aa~AL~nLa~~ 612 (660)
.++.+|+.+|+||+..+ +++|..|.+. |+|+.|+.+++. .+...+++|+.+|+|||..
T Consensus 166 ~v~~na~~~L~nLss~~--------~~~R~~~r~~~Gli~~Lv~~l~~~~~~~~~~~k~~En~v~~L~nLs~~ 230 (233)
T 3tt9_A 166 DIFYNVTGCLRNMSSAG--------ADGRKAMRRCDGLIDSLVHYVRGTIADYQPDDKATENCVCILHNLSYQ 230 (233)
T ss_dssp HHHHHHHHHHHHHTTSC--------HHHHHHHHTSTTHHHHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHCCC
T ss_pred HHHHHHHHHHHHHhcCC--------HHHHHHHHHCCCcHHHHHHHHHhhhhcccchhHHHHHHHHHHHHHHhh
Confidence 99999999999999754 4678889875 678999999875 2678999999999999864
No 26
>1jdh_A Beta-catenin; beta-catenin, protein-protein complex, transcription; 1.90A {Homo sapiens} SCOP: a.118.1.1 PDB: 1qz7_A 1g3j_A 1th1_A* 1i7w_A* 1i7x_A 1jpp_A 1m1e_A 1v18_A* 3oux_A 3ouw_A 1jpw_A 3tx7_A* 2gl7_A 1t08_A 1luj_A 2bct_A 3bct_A* 3ifq_A* 3sla_A 3sl9_A
Probab=99.89 E-value=1.6e-22 Score=223.85 Aligned_cols=269 Identities=19% Similarity=0.225 Sum_probs=229.9
Q ss_pred chhhhhhcccCC-Cccccccchhhh---hhcCchhHHHHHhCCCHHHHHHhhCCCCHHHHHHHHHHHHHhhCC-chhHHH
Q 006114 369 DYISKGSSRFGA-PMSLQKSNPSRE---LSGQRATIAKICDEVGLPKILQLLTSEDPDVQIHAVKVVANLAAE-DINQEK 443 (660)
Q Consensus 369 g~i~~l~~~L~~-~~~~vr~~~~~~---laa~~~~~~~I~e~ggI~~LV~LL~s~d~~vr~~Aa~aL~nLa~~-~en~~~ 443 (660)
|.++.++..+.+ ..+.++..+... ++....+...+++.|++|.|+.+|.++++.++..|+++|++|+.+ +.++..
T Consensus 59 ~~i~~Lv~~L~~~~~~~~~~~a~~~L~~ls~~~~~~~~i~~~g~i~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~~~~~ 138 (529)
T 1jdh_A 59 QMVSAIVRTMQNTNDVETARCTAGTLHNLSHHREGLLAIFKSGGIPALVKMLGSPVDSVLFYAITTLHNLLLHQEGAKMA 138 (529)
T ss_dssp HHHHHHHHHHHHCCCHHHHHHHHHHHHHHTTSHHHHHHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHHHHCTTHHHH
T ss_pred chHHHHHHHHhcCCCHHHHHHHHHHHHHHHcCchhHHHHHHcCCHHHHHHHHcCCCHHHHHHHHHHHHHHhcCCcchHHH
Confidence 556666666532 244455554444 677777788899999999999999999999999999999999994 677888
Q ss_pred HHHcCCHHHHHHHHccCCCHHHHHHHHHHHHHhhcC-chhHHHHHhcCccHHHHHhhcCCCCHHHHHHHHHHHHHHhcCh
Q 006114 444 IVEEGGLDALLLLLRTSQNTTILRVASGAIANLAMN-EMNQGLIMSRGGGQLLAKTASKTDDPQTLRMVAGALANLCGNE 522 (660)
Q Consensus 444 Ive~GgI~~Lv~LL~~s~d~~v~~~Aa~AL~nLA~~-~~n~~~Ive~g~I~~Ll~LL~~s~d~~v~~~Aa~aLanLa~~~ 522 (660)
+++.|++|.|+.+|. ++++.++..++.+|++++.+ ++++..++..|+++.|+.++.++.+......++.+|++|+.++
T Consensus 139 i~~~g~i~~L~~ll~-~~~~~~~~~~~~~L~~la~~~~~~~~~i~~~~~i~~L~~ll~~~~~~~~~~~a~~~L~~l~~~~ 217 (529)
T 1jdh_A 139 VRLAGGLQKMVALLN-KTNVKFLAITTDCLQILAYGNQESKLIILASGGPQALVNIMRTYTYEKLLWTTSRVLKVLSVCS 217 (529)
T ss_dssp HHHHTHHHHHHHGGG-CCCHHHHHHHHHHHHHHHTTCHHHHHHHHHTTHHHHHHHHHHHCCCHHHHHHHHHHHHHHTTST
T ss_pred HHHcCCHHHHHHHHh-cCCHHHHHHHHHHHHHHHhCCHHHHHHHHHCCCHHHHHHHHHhCChHHHHHHHHHHHHHHhcCc
Confidence 889999999999998 67899999999999999975 8899999999999999999988777778888889999999999
Q ss_pred hHHHHHHhccHHHHHHHHhcCCCHHHHHHHHHHHHHhhccchhhhhhcchhhhHHHhhcChHHHHHHhhcCCCHHHHHHH
Q 006114 523 KLHTMLEEDGAIKALLAMVRSGNIDVIAQVARGLANFAKCESRAIVQGQRKGRSHLMEDSALEWLIANSKTNSASTRRHV 602 (660)
Q Consensus 523 ~~r~~iv~~G~V~~Lv~lL~s~~~~v~~~Al~aLanLA~~~~~~~aq~~~e~r~~Li~~G~v~~Lv~lL~s~d~~vr~~A 602 (660)
.++..+++.|+++.|+.++.++++.++..++++|++|+...+.. ....|++|.|+.++.+.++.++..|
T Consensus 218 ~~~~~~~~~g~~~~L~~ll~~~~~~~~~~a~~~L~~l~~~~~~~-----------~~~~~~i~~L~~ll~~~~~~v~~~a 286 (529)
T 1jdh_A 218 SNKPAIVEAGGMQALGLHLTDPSQRLVQNCLWTLRNLSDAATKQ-----------EGMEGLLGTLVQLLGSDDINVVTCA 286 (529)
T ss_dssp THHHHHHHTTHHHHHHTTTTSSCHHHHHHHHHHHHHHHTTCTTC-----------SCCHHHHHHHHHHTTCSCHHHHHHH
T ss_pred ccHHHHHHCCCHHHHHHHHhCCChHHHHHHHHHHHHHhcCChhh-----------HHHHhHHHHHHHHHcCCCHHHHHHH
Confidence 99999999999999999999999999999999999999764320 1224899999999999999999999
Q ss_pred HHHHHHhhcCC-ccHHHHHhcCcHHHHHHHHhcC-ChHHHHHHHHHHHh
Q 006114 603 ELALCHLAQNE-DNARDFISRGGAKELVQISIES-SREDIRNLAKKTMK 649 (660)
Q Consensus 603 a~AL~nLa~~~-e~~~~Ive~G~l~~Lv~lL~s~-s~~~ir~~A~~~L~ 649 (660)
+++|++|+.++ .++..+.+.|+++.|+.++.+. +.+.++..|.++|.
T Consensus 287 ~~~L~~L~~~~~~~~~~~~~~~~v~~L~~ll~~~~~~~~v~~~a~~~L~ 335 (529)
T 1jdh_A 287 AGILSNLTCNNYKNKMMVCQVGGIEALVRTVLRAGDREDITEPAICALR 335 (529)
T ss_dssp HHHHHHHTTTCHHHHHHHHHTTHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHhcCCHHHHHHHHHcCChHHHHHHHHccCCHHHHHHHHHHHHH
Confidence 99999999876 6888999999999999999874 33667777776664
No 27
>1jdh_A Beta-catenin; beta-catenin, protein-protein complex, transcription; 1.90A {Homo sapiens} SCOP: a.118.1.1 PDB: 1qz7_A 1g3j_A 1th1_A* 1i7w_A* 1i7x_A 1jpp_A 1m1e_A 1v18_A* 3oux_A 3ouw_A 1jpw_A 3tx7_A* 2gl7_A 1t08_A 1luj_A 2bct_A 3bct_A* 3ifq_A* 3sla_A 3sl9_A
Probab=99.89 E-value=2.6e-22 Score=222.19 Aligned_cols=265 Identities=20% Similarity=0.203 Sum_probs=226.0
Q ss_pred ccchhhhhhcccCCCccccccchhhh---hhcCc-hhHHHHHhCCCHHHHHHhhCCCCHHHHHHHHHHHHHhhC-CchhH
Q 006114 367 TKDYISKGSSRFGAPMSLQKSNPSRE---LSGQR-ATIAKICDEVGLPKILQLLTSEDPDVQIHAVKVVANLAA-EDINQ 441 (660)
Q Consensus 367 ~~g~i~~l~~~L~~~~~~vr~~~~~~---laa~~-~~~~~I~e~ggI~~LV~LL~s~d~~vr~~Aa~aL~nLa~-~~en~ 441 (660)
..|+++.++..+.+..+.++..+.+. ++..+ .....+++.|++|.|+.+|.+++..++..++.+|.+++. +++++
T Consensus 99 ~~g~i~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~~~~~i~~~g~i~~L~~ll~~~~~~~~~~~~~~L~~la~~~~~~~ 178 (529)
T 1jdh_A 99 KSGGIPALVKMLGSPVDSVLFYAITTLHNLLLHQEGAKMAVRLAGGLQKMVALLNKTNVKFLAITTDCLQILAYGNQESK 178 (529)
T ss_dssp HTTHHHHHHHHTTCSCHHHHHHHHHHHHHHHHHCTTHHHHHHHHTHHHHHHHGGGCCCHHHHHHHHHHHHHHHTTCHHHH
T ss_pred HcCCHHHHHHHHcCCCHHHHHHHHHHHHHHhcCCcchHHHHHHcCCHHHHHHHHhcCCHHHHHHHHHHHHHHHhCCHHHH
Confidence 44889999999988887777776666 55543 445567789999999999999999999999999999998 68899
Q ss_pred HHHHHcCCHHHHHHHHccCCCHHHHHHHHHHHHHhhcCchhHHHHHhcCccHHHHHhhcC--------------------
Q 006114 442 EKIVEEGGLDALLLLLRTSQNTTILRVASGAIANLAMNEMNQGLIMSRGGGQLLAKTASK-------------------- 501 (660)
Q Consensus 442 ~~Ive~GgI~~Lv~LL~~s~d~~v~~~Aa~AL~nLA~~~~n~~~Ive~g~I~~Ll~LL~~-------------------- 501 (660)
..+++.||++.|+.+|.++.+..++..++.+|++|+.++.++..++..|+++.|+.++.+
T Consensus 179 ~~i~~~~~i~~L~~ll~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~g~~~~L~~ll~~~~~~~~~~a~~~L~~l~~~~ 258 (529)
T 1jdh_A 179 LIILASGGPQALVNIMRTYTYEKLLWTTSRVLKVLSVCSSNKPAIVEAGGMQALGLHLTDPSQRLVQNCLWTLRNLSDAA 258 (529)
T ss_dssp HHHHHTTHHHHHHHHHHHCCCHHHHHHHHHHHHHHTTSTTHHHHHHHTTHHHHHHTTTTSSCHHHHHHHHHHHHHHHTTC
T ss_pred HHHHHCCCHHHHHHHHHhCChHHHHHHHHHHHHHHhcCcccHHHHHHCCCHHHHHHHHhCCChHHHHHHHHHHHHHhcCC
Confidence 999999999999999997777888888999999999999999999988888877766643
Q ss_pred ------------------CCCHHHHHHHHHHHHHHhc-ChhHHHHHHhccHHHHHHHHhcC--CCHHHHHHHHHHHHHhh
Q 006114 502 ------------------TDDPQTLRMVAGALANLCG-NEKLHTMLEEDGAIKALLAMVRS--GNIDVIAQVARGLANFA 560 (660)
Q Consensus 502 ------------------s~d~~v~~~Aa~aLanLa~-~~~~r~~iv~~G~V~~Lv~lL~s--~~~~v~~~Al~aLanLA 560 (660)
++++.++..|+++|++|+. +++.+..+++.|+++.|+.++.+ .++.++..|+.+|+||+
T Consensus 259 ~~~~~~~~~i~~L~~ll~~~~~~v~~~a~~~L~~L~~~~~~~~~~~~~~~~v~~L~~ll~~~~~~~~v~~~a~~~L~nl~ 338 (529)
T 1jdh_A 259 TKQEGMEGLLGTLVQLLGSDDINVVTCAAGILSNLTCNNYKNKMMVCQVGGIEALVRTVLRAGDREDITEPAICALRHLT 338 (529)
T ss_dssp TTCSCCHHHHHHHHHHTTCSCHHHHHHHHHHHHHHTTTCHHHHHHHHHTTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHT
T ss_pred hhhHHHHhHHHHHHHHHcCCCHHHHHHHHHHHHHHhcCCHHHHHHHHHcCChHHHHHHHHccCCHHHHHHHHHHHHHHHH
Confidence 3567788888888889884 46799999999999999999974 45899999999999999
Q ss_pred ccchhhhhhcchhhhHHHhhcChHHHHHHhhcCCC-HHHHHHHHHHHHHhhcCCccHHHHHhcCcHHHHHHHHhcCC
Q 006114 561 KCESRAIVQGQRKGRSHLMEDSALEWLIANSKTNS-ASTRRHVELALCHLAQNEDNARDFISRGGAKELVQISIESS 636 (660)
Q Consensus 561 ~~~~~~~aq~~~e~r~~Li~~G~v~~Lv~lL~s~d-~~vr~~Aa~AL~nLa~~~e~~~~Ive~G~l~~Lv~lL~s~s 636 (660)
.+++.. ...+..+...|++|.|+.++.+++ +.++..|+|+|+|++.++.+...+++.|+++.|+.++.+++
T Consensus 339 ~~~~~~-----~~~~~~i~~~~~i~~L~~lL~~~~~~~v~~~a~~~l~nl~~~~~~~~~~~~~~~i~~L~~ll~~~~ 410 (529)
T 1jdh_A 339 SRHQEA-----EMAQNAVRLHYGLPVVVKLLHPPSHWPLIKATVGLIRNLALCPANHAPLREQGAIPRLVQLLVRAH 410 (529)
T ss_dssp SSSTTH-----HHHHHHHHHTTCHHHHHHTTSTTCCHHHHHHHHHHHHHHTTSGGGHHHHHHTTHHHHHHHHHHHHH
T ss_pred cCCchH-----HHHHHHHHHcCChhHHHHHhccccchHHHHHHHHHHHHHhcChhhhHHHHHcCCHHHHHHHHHHHh
Confidence 765421 235667889999999999999876 69999999999999999988899999999999999998643
No 28
>2jdq_A Importin alpha-1 subunit; transport, PB2 subunit, nuclear protein, protein transport, armadillo repeats; 2.2A {Homo sapiens} PDB: 3tj3_A
Probab=99.89 E-value=8.7e-22 Score=213.24 Aligned_cols=269 Identities=16% Similarity=0.177 Sum_probs=226.8
Q ss_pred cchhhhhhcccCCCccccccchhhh---hhcCch-hHHHHHhCCCHHHHHHhhCC-CCHHHHHHHHHHHHHhhCC--chh
Q 006114 368 KDYISKGSSRFGAPMSLQKSNPSRE---LSGQRA-TIAKICDEVGLPKILQLLTS-EDPDVQIHAVKVVANLAAE--DIN 440 (660)
Q Consensus 368 ~g~i~~l~~~L~~~~~~vr~~~~~~---laa~~~-~~~~I~e~ggI~~LV~LL~s-~d~~vr~~Aa~aL~nLa~~--~en 440 (660)
.|.++.++..+.+..+.++..+.+. ++...+ ....++..|++|.|+.++.+ ++..++..|+++|++|+.. +..
T Consensus 106 ~~~i~~L~~lL~~~~~~vr~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~~l~~~~~~~v~~~a~~~L~~l~~~~~~~~ 185 (450)
T 2jdq_A 106 AGAVPIFIELLSSEFEDVQEQAVWALGNIAGDSTMCRDYVLDCNILPPLLQLFSKQNRLTMTRNAVWALSNLCRGKSPPP 185 (450)
T ss_dssp TTHHHHHHHHTTCSCHHHHHHHHHHHHHHHTTCHHHHHHHHHTTCHHHHHHHTTSCCCHHHHHHHHHHHHHHHCCSSSCC
T ss_pred CCCHHHHHHHHcCCCHHHHHHHHHHHHHHccCCHHHHHHHHHCCCHHHHHHHhcCCCCHHHHHHHHHHHHHHhCCCCCCC
Confidence 5788889999988888888887776 566554 44557788999999999995 7899999999999999974 333
Q ss_pred HHHHHHcCCHHHHHHHHccCCCHHHHHHHHHHHHHhhcC-chhHHHHHhcCccHHHHHhhcCCCCHHHHHHHHHHHHHHh
Q 006114 441 QEKIVEEGGLDALLLLLRTSQNTTILRVASGAIANLAMN-EMNQGLIMSRGGGQLLAKTASKTDDPQTLRMVAGALANLC 519 (660)
Q Consensus 441 ~~~Ive~GgI~~Lv~LL~~s~d~~v~~~Aa~AL~nLA~~-~~n~~~Ive~g~I~~Ll~LL~~s~d~~v~~~Aa~aLanLa 519 (660)
...++ .|++|.|+.+|. +.|+.++..|+++|++|+.+ +++...++..|+++.|+.++. ++++.++..|+++|++++
T Consensus 186 ~~~~~-~~~l~~L~~~l~-~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~ll~-~~~~~v~~~a~~~L~~l~ 262 (450)
T 2jdq_A 186 EFAKV-SPCLNVLSWLLF-VSDTDVLADACWALSYLSDGPNDKIQAVIDAGVCRRLVELLM-HNDYKVVSPALRAVGNIV 262 (450)
T ss_dssp CGGGT-GGGHHHHHHHTT-CCCHHHHHHHHHHHHHHTSSSHHHHHHHHHTTTHHHHHHHTT-CSCHHHHHHHHHHHHHHT
T ss_pred CHHHH-HHHHHHHHHHHc-cCCHHHHHHHHHHHHHHHCCCcHHHHHHHHcCcHHHHHHHHC-CCchhHHHHHHHHHHHHh
Confidence 33333 789999999997 77899999999999999986 667778888999999999997 478999999999999999
Q ss_pred -cChhHHHHHHhccHHHHHHHHhcCCCHHHHHHHHHHHHHhhccchhhhhhcchhhhHHHhhcChHHHHHHhhcCCCHHH
Q 006114 520 -GNEKLHTMLEEDGAIKALLAMVRSGNIDVIAQVARGLANFAKCESRAIVQGQRKGRSHLMEDSALEWLIANSKTNSAST 598 (660)
Q Consensus 520 -~~~~~r~~iv~~G~V~~Lv~lL~s~~~~v~~~Al~aLanLA~~~~~~~aq~~~e~r~~Li~~G~v~~Lv~lL~s~d~~v 598 (660)
.++.....+++.|+++.|+.++.++++.++..|+++|++|+.+++ .....+++.|++|.|+.++.+.++.+
T Consensus 263 ~~~~~~~~~~~~~~~l~~L~~ll~~~~~~vr~~a~~~L~~l~~~~~--------~~~~~~~~~~~l~~L~~~l~~~~~~v 334 (450)
T 2jdq_A 263 TGDDIQTQVILNCSALQSLLHLLSSPKESIKKEACWTISNITAGNR--------AQIQTVIDANIFPALISILQTAEFRT 334 (450)
T ss_dssp TSCHHHHHHHHTTTHHHHHHHHTTCSSHHHHHHHHHHHHHHTTSCH--------HHHHHHHHTTHHHHHHHHHHHSCHHH
T ss_pred hCChHHHHHHHHCccHHHHHHHHcCCCHHHHHHHHHHHHHHHcCCH--------HHHHHHHHCCCHHHHHHHHhcCCHHH
Confidence 456666778889999999999999999999999999999997543 34456778899999999999999999
Q ss_pred HHHHHHHHHHhhcC--CccHHHHHhcCcHHHHHHHHhcCChHHHHHHHHHHH
Q 006114 599 RRHVELALCHLAQN--EDNARDFISRGGAKELVQISIESSREDIRNLAKKTM 648 (660)
Q Consensus 599 r~~Aa~AL~nLa~~--~e~~~~Ive~G~l~~Lv~lL~s~s~~~ir~~A~~~L 648 (660)
+..|+|+|++|+.+ +.....++..|+++.|+.++.+++. .++..|..+|
T Consensus 335 ~~~a~~~L~~l~~~~~~~~~~~l~~~~~i~~L~~ll~~~~~-~v~~~a~~aL 385 (450)
T 2jdq_A 335 RKEAAWAITNATSGGSAEQIKYLVELGCIKPLCDLLTVMDS-KIVQVALNGL 385 (450)
T ss_dssp HHHHHHHHHHHHHHCCHHHHHHHHHHTCHHHHHHGGGSSCH-HHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCCHHHHHHHHHCCCHHHHHHHhcCCCH-HHHHHHHHHH
Confidence 99999999999874 4667778899999999999997654 5555555444
No 29
>1xqr_A HSPBP1 protein; armadillo repeat, superhelical twist, chaperone; 2.10A {Homo sapiens} SCOP: a.118.1.21 PDB: 1xqs_A*
Probab=99.88 E-value=3.6e-21 Score=201.98 Aligned_cols=219 Identities=16% Similarity=0.131 Sum_probs=185.1
Q ss_pred HHHHHHHHHHHHhhCCchhHHHHHHcCCHHHHHH-HHccCCCHHHHHHHHHHHHHhhcC-chhHHHHHhcCccHHHHHhh
Q 006114 422 DVQIHAVKVVANLAAEDINQEKIVEEGGLDALLL-LLRTSQNTTILRVASGAIANLAMN-EMNQGLIMSRGGGQLLAKTA 499 (660)
Q Consensus 422 ~vr~~Aa~aL~nLa~~~en~~~Ive~GgI~~Lv~-LL~~s~d~~v~~~Aa~AL~nLA~~-~~n~~~Ive~g~I~~Ll~LL 499 (660)
+-+..|+..|.+++.+.+++..|+..||+|+|+. +|. ++++.++..|+++|++++.+ |..+..+++.|++|+|+.+|
T Consensus 55 e~k~~Al~~L~~lv~~~dna~~~~~~G~l~~Lv~~lL~-s~~~~vr~~Aa~~Lg~ia~~n~~~~~~vv~~g~l~~Ll~LL 133 (296)
T 1xqr_A 55 QEREGALELLADLCENMDNAADFCQLSGMHLLVGRYLE-AGAAGLRWRAAQLIGTCSQNVAAIQEQVLGLGALRKLLRLL 133 (296)
T ss_dssp HHHHHHHHHHHHHHTSHHHHHHHHHTTHHHHHHHTTTT-CSSHHHHHHHHHHHHHHHTTCHHHHHHHHHTTHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhChhhHHHHHHcCCHHHHHHHHHc-CCCHHHHHHHHHHHHHHHhCCHHHHHHHHHCCCHHHHHHHH
Confidence 5778899999999999889999999999999999 997 78999999999999999986 78899999999999999999
Q ss_pred cCCCCHHHHHHHHHHHHHHh-cChhHHHHHHhccHHHHHHHHhcCCCHHHHHHHHHHHHHhhccchhhhhhcchhhhHHH
Q 006114 500 SKTDDPQTLRMVAGALANLC-GNEKLHTMLEEDGAIKALLAMVRSGNIDVIAQVARGLANFAKCESRAIVQGQRKGRSHL 578 (660)
Q Consensus 500 ~~s~d~~v~~~Aa~aLanLa-~~~~~r~~iv~~G~V~~Lv~lL~s~~~~v~~~Al~aLanLA~~~~~~~aq~~~e~r~~L 578 (660)
...+++.+++.|+|+|+||+ .++.....++..||++.|+.++.++++.++..|+++|++|+.++ ++.+..+
T Consensus 134 ~~~~~~~v~~~A~~ALsnl~~~~~~~~~~~~~~ggi~~L~~lL~~~d~~v~~~A~~aLs~L~~~~--------~~~~~~v 205 (296)
T 1xqr_A 134 DRDACDTVRVKALFAISCLVREQEAGLLQFLRLDGFSVLMRAMQQQVQKLKVKSAFLLQNLLVGH--------PEHKGTL 205 (296)
T ss_dssp HHCSCHHHHHHHHHHHHHHHTTCHHHHHHHHHTTHHHHHHHHHHSSCHHHHHHHHHHHHHHHHHC--------GGGHHHH
T ss_pred ccCCCHHHHHHHHHHHHHHHcCCcHHHHHHHHCCCHHHHHHHHcCCCHHHHHHHHHHHHHHHhCC--------hHHHHHH
Confidence 86568899999999999998 56777888999999999999999999999999999999999754 4567789
Q ss_pred hhcChHHHHHHhhcCCCHHHHHHHHHHHHHhhcCCccHHHHHhcC--cHHHH----HHHHhcCC-hHHHHHHHHHHHh
Q 006114 579 MEDSALEWLIANSKTNSASTRRHVELALCHLAQNEDNARDFISRG--GAKEL----VQISIESS-REDIRNLAKKTMK 649 (660)
Q Consensus 579 i~~G~v~~Lv~lL~s~d~~vr~~Aa~AL~nLa~~~e~~~~Ive~G--~l~~L----v~lL~s~s-~~~ir~~A~~~L~ 649 (660)
++.|++++|+.+|.++++.++..|+++|++|+............+ .+..+ ..-++... ..++.+.|.+++.
T Consensus 206 v~~g~i~~Lv~LL~~~d~~v~~~al~aL~~l~~~~~~~~~~~~~~~~~l~~lL~~~~~~lq~~e~~~e~~~~~~~il~ 283 (296)
T 1xqr_A 206 CSMGMVQQLVALVRTEHSPFHEHVLGALCSLVTDFPQGVRECREPELGLEELLRHRCQLLQQHEEYQEELEFCEKLLQ 283 (296)
T ss_dssp HHTTHHHHHHHHHTSCCSTHHHHHHHHHHHHHTTCHHHHHHHHCGGGCHHHHHHHHHHHHTTCGGGHHHHHHHHHHHH
T ss_pred HHcCCHHHHHHHHcCCChhHHHHHHHHHHHHHhCChhHHHHHhccHHHHHHHHHHHHHHccchHHHHHHHHHHHHHHH
Confidence 999999999999999999999999999999998753322222222 12111 23333232 5678888888875
No 30
>2z6h_A Catenin beta-1, beta-catenin; C-terminal domain, activator, alternative splicing, cell adhesion, cytoplasm, cytoskeleton, disease mutation, nucleus; 2.20A {Homo sapiens}
Probab=99.88 E-value=1.3e-21 Score=224.67 Aligned_cols=270 Identities=19% Similarity=0.231 Sum_probs=231.4
Q ss_pred chhhhhhcccCCC-ccccccchhhh---hhcCchhHHHHHhCCCHHHHHHhhCCCCHHHHHHHHHHHHHhhCC-chhHHH
Q 006114 369 DYISKGSSRFGAP-MSLQKSNPSRE---LSGQRATIAKICDEVGLPKILQLLTSEDPDVQIHAVKVVANLAAE-DINQEK 443 (660)
Q Consensus 369 g~i~~l~~~L~~~-~~~vr~~~~~~---laa~~~~~~~I~e~ggI~~LV~LL~s~d~~vr~~Aa~aL~nLa~~-~en~~~ 443 (660)
|.++.++..+.+. ...++..+... ++....+...+++.|++|.|+.+|.++++.++..|+++|.+|+.. +..+..
T Consensus 56 ~~i~~Lv~~L~~~~~~~~~~~A~~~L~~Ls~~~~~~~~i~~~g~i~~Lv~lL~~~~~~v~~~A~~aL~nL~~~~~~~~~~ 135 (644)
T 2z6h_A 56 QMVSAIVRTMQNTNDVETARCTAGTLHNLSHHREGLLAIFKSGGIPALVKMLGSPVDSVLFYAITTLHNLLLHQEGAKMA 135 (644)
T ss_dssp HHHHHHHHHHHSCCCHHHHHHHHHHHHHHTTSHHHHHHHHTTTHHHHHHHHTTCSSHHHHHHHHHHHHHHHHHSTTHHHH
T ss_pred ChHHHHHHHHhcCCCHHHHHHHHHHHHHHhcChhhHHHHHHcCCHHHHHHHHhCCCHHHHHHHHHHHHHHHhCcchhHHH
Confidence 5677777766542 44455554444 677777888899999999999999999999999999999999984 667888
Q ss_pred HHHcCCHHHHHHHHccCCCHHHHHHHHHHHHHhhc-CchhHHHHHhcCccHHHHHhhcCCCCHHHHHHHHHHHHHHhcCh
Q 006114 444 IVEEGGLDALLLLLRTSQNTTILRVASGAIANLAM-NEMNQGLIMSRGGGQLLAKTASKTDDPQTLRMVAGALANLCGNE 522 (660)
Q Consensus 444 Ive~GgI~~Lv~LL~~s~d~~v~~~Aa~AL~nLA~-~~~n~~~Ive~g~I~~Ll~LL~~s~d~~v~~~Aa~aLanLa~~~ 522 (660)
+++.|++|.|+.+|. ++++.++..++.+|++|+. +++++..++..|+++.|+.++.++.+..++..++.+|+||+.++
T Consensus 136 v~~~g~i~~Lv~lL~-~~~~~~~~~a~~~L~~La~~~~~~~~~i~~~g~v~~Lv~lL~~~~~~~~~~~a~~~L~nLs~~~ 214 (644)
T 2z6h_A 136 VRLAGGLQKMVALLN-KTNVKFLAITTDCLQILAYGNQESKLIILASGGPQALVNIMRTYTYEKLLWTTSRVLKVLSVCS 214 (644)
T ss_dssp HHHTTHHHHHHHGGG-CCCHHHHHHHHHHHHHHHTTCHHHHHHHHHTTHHHHHHHHHTTCCCHHHHHHHHHHHHHHTTCT
T ss_pred HHHCCChHHHHHHHC-cCCHHHHHHHHHHHHHHHhcCcHHHHHHHHcCChHHHHHHHHcCChHHHHHHHHHHHHHHhcCc
Confidence 889999999999998 6688888889999999996 68999999999999999999987767788899999999999999
Q ss_pred hHHHHHHhccHHHHHHHHhcCCCHHHHHHHHHHHHHhhccchhhhhhcchhhhHHHhhcChHHHHHHhhcCCCHHHHHHH
Q 006114 523 KLHTMLEEDGAIKALLAMVRSGNIDVIAQVARGLANFAKCESRAIVQGQRKGRSHLMEDSALEWLIANSKTNSASTRRHV 602 (660)
Q Consensus 523 ~~r~~iv~~G~V~~Lv~lL~s~~~~v~~~Al~aLanLA~~~~~~~aq~~~e~r~~Li~~G~v~~Lv~lL~s~d~~vr~~A 602 (660)
.++..+++.|+++.|+.++.++++.++..|+++|+||+...+. .....|+++.|+.++.+.++.++..|
T Consensus 215 ~~~~~l~~~g~l~~L~~ll~~~~~~~~~~a~~~L~nL~~~~~~-----------~~~~~~~i~~Lv~lL~~~d~~v~~~a 283 (644)
T 2z6h_A 215 SNKPAIVEAGGMQALGLHLTDPSQRLVQNCLWTLRNLSDAATK-----------QEGMEGLLGTLVQLLGSDDINVVTCA 283 (644)
T ss_dssp THHHHHHHTTHHHHHHTTTTCSCHHHHHHHHHHHHHHGGGCTT-----------CCSCHHHHHHHHHHTTCSCHHHHHHH
T ss_pred ccHHHHHHCCCHHHHHHHHhcCCHHHHHHHHHHHHHHhhcchh-----------hhhhhhHHHHHHHHHcCCCHHHHHHH
Confidence 9999999999999999999999999999999999999965421 11224899999999999999999999
Q ss_pred HHHHHHhhcCC-ccHHHHHhcCcHHHHHHHHhcCC-hHHHHHHHHHHHhc
Q 006114 603 ELALCHLAQNE-DNARDFISRGGAKELVQISIESS-REDIRNLAKKTMKS 650 (660)
Q Consensus 603 a~AL~nLa~~~-e~~~~Ive~G~l~~Lv~lL~s~s-~~~ir~~A~~~L~~ 650 (660)
+++|++|+.++ .++..+++.|+++.|+.++.+.+ .+.++..|.++|.+
T Consensus 284 ~~aL~~L~~~~~~~~~~v~~~g~v~~Lv~lL~~~~~~~~v~~~a~~aL~n 333 (644)
T 2z6h_A 284 AGILSNLTCNNYKNKMMVCQVGGIEALVRTVLRAGDREDITEPAICALRH 333 (644)
T ss_dssp HHHHHHHHTTCHHHHHHHHHTTHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHcCCHHHHHHHHHcCCHHHHHHHHHccCCcHHHHHHHHHHHHH
Confidence 99999999876 77888999999999999998754 36677777766643
No 31
>2z6h_A Catenin beta-1, beta-catenin; C-terminal domain, activator, alternative splicing, cell adhesion, cytoplasm, cytoskeleton, disease mutation, nucleus; 2.20A {Homo sapiens}
Probab=99.88 E-value=6.4e-21 Score=218.96 Aligned_cols=264 Identities=21% Similarity=0.210 Sum_probs=225.3
Q ss_pred ccchhhhhhcccCCCccccccchhhh---hhcC-chhHHHHHhCCCHHHHHHhhCCCCHHHHHHHHHHHHHhhC-CchhH
Q 006114 367 TKDYISKGSSRFGAPMSLQKSNPSRE---LSGQ-RATIAKICDEVGLPKILQLLTSEDPDVQIHAVKVVANLAA-EDINQ 441 (660)
Q Consensus 367 ~~g~i~~l~~~L~~~~~~vr~~~~~~---laa~-~~~~~~I~e~ggI~~LV~LL~s~d~~vr~~Aa~aL~nLa~-~~en~ 441 (660)
..|+++.++..+.+..+.++..+... ++.. ......+++.|++|.|+.+|.+++..++..++.+|.+|+. +++++
T Consensus 96 ~~g~i~~Lv~lL~~~~~~v~~~A~~aL~nL~~~~~~~~~~v~~~g~i~~Lv~lL~~~~~~~~~~a~~~L~~La~~~~~~~ 175 (644)
T 2z6h_A 96 KSGGIPALVKMLGSPVDSVLFYAITTLHNLLLHQEGAKMAVRLAGGLQKMVALLNKTNVKFLAITTDCLQILAYGNQESK 175 (644)
T ss_dssp TTTHHHHHHHHTTCSSHHHHHHHHHHHHHHHHHSTTHHHHHHHTTHHHHHHHGGGCCCHHHHHHHHHHHHHHHTTCHHHH
T ss_pred HcCCHHHHHHHHhCCCHHHHHHHHHHHHHHHhCcchhHHHHHHCCChHHHHHHHCcCCHHHHHHHHHHHHHHHhcCcHHH
Confidence 34788999999988887777777666 4444 3455667789999999999999999999999999999997 78999
Q ss_pred HHHHHcCCHHHHHHHHccCCCHHHHHHHHHHHHHhhcCchhHHHHHhcCccHHHHHhhcC--------------------
Q 006114 442 EKIVEEGGLDALLLLLRTSQNTTILRVASGAIANLAMNEMNQGLIMSRGGGQLLAKTASK-------------------- 501 (660)
Q Consensus 442 ~~Ive~GgI~~Lv~LL~~s~d~~v~~~Aa~AL~nLA~~~~n~~~Ive~g~I~~Ll~LL~~-------------------- 501 (660)
..+++.||++.|+.+|.++....++..++.+|++|+.++.++..++..|+++.|+.++.+
T Consensus 176 ~~i~~~g~v~~Lv~lL~~~~~~~~~~~a~~~L~nLs~~~~~~~~l~~~g~l~~L~~ll~~~~~~~~~~a~~~L~nL~~~~ 255 (644)
T 2z6h_A 176 LIILASGGPQALVNIMRTYTYEKLLWTTSRVLKVLSVCSSNKPAIVEAGGMQALGLHLTDPSQRLVQNCLWTLRNLSDAA 255 (644)
T ss_dssp HHHHHTTHHHHHHHHHTTCCCHHHHHHHHHHHHHHTTCTTHHHHHHHTTHHHHHHTTTTCSCHHHHHHHHHHHHHHGGGC
T ss_pred HHHHHcCChHHHHHHHHcCChHHHHHHHHHHHHHHhcCcccHHHHHHCCCHHHHHHHHhcCCHHHHHHHHHHHHHHhhcc
Confidence 999999999999999997777888899999999999999999999999988888776543
Q ss_pred ------------------CCCHHHHHHHHHHHHHHhc-ChhHHHHHHhccHHHHHHHHhcC-C-CHHHHHHHHHHHHHhh
Q 006114 502 ------------------TDDPQTLRMVAGALANLCG-NEKLHTMLEEDGAIKALLAMVRS-G-NIDVIAQVARGLANFA 560 (660)
Q Consensus 502 ------------------s~d~~v~~~Aa~aLanLa~-~~~~r~~iv~~G~V~~Lv~lL~s-~-~~~v~~~Al~aLanLA 560 (660)
+.++.++..|+++|++|+. ++.++..+++.|+++.|+.++.+ + .+.++..|+.+|+||+
T Consensus 256 ~~~~~~~~~i~~Lv~lL~~~d~~v~~~a~~aL~~L~~~~~~~~~~v~~~g~v~~Lv~lL~~~~~~~~v~~~a~~aL~nL~ 335 (644)
T 2z6h_A 256 TKQEGMEGLLGTLVQLLGSDDINVVTCAAGILSNLTCNNYKNKMMVCQVGGIEALVRTVLRAGDREDITEPAICALRHLT 335 (644)
T ss_dssp TTCCSCHHHHHHHHHHTTCSCHHHHHHHHHHHHHHHTTCHHHHHHHHHTTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHT
T ss_pred hhhhhhhhHHHHHHHHHcCCCHHHHHHHHHHHHHHHcCCHHHHHHHHHcCCHHHHHHHHHccCCcHHHHHHHHHHHHHHh
Confidence 3567788888888888884 56788999999999999999985 3 3899999999999999
Q ss_pred ccchhhhhhcchhhhHHHhhcChHHHHHHhhcCCC-HHHHHHHHHHHHHhhcCCccHHHHHhcCcHHHHHHHHhcC
Q 006114 561 KCESRAIVQGQRKGRSHLMEDSALEWLIANSKTNS-ASTRRHVELALCHLAQNEDNARDFISRGGAKELVQISIES 635 (660)
Q Consensus 561 ~~~~~~~aq~~~e~r~~Li~~G~v~~Lv~lL~s~d-~~vr~~Aa~AL~nLa~~~e~~~~Ive~G~l~~Lv~lL~s~ 635 (660)
.+++.. ...+..+...|+++.|+.+|.+.+ +.++..|+|+|+||+.++.+...++..|+++.|+.++.+.
T Consensus 336 ~~~~~~-----~~~q~~v~~~~~l~~L~~lL~~~~~~~v~~~a~~~L~nLa~~~~~~~~i~~~~~i~~Lv~lL~~~ 406 (644)
T 2z6h_A 336 SRHQEA-----EMAQNAVRLHYGLPVVVKLLHPPSHWPLIKATVGLIRNLALCPANHAPLREQGAIPRLVQLLVRA 406 (644)
T ss_dssp SSSTTH-----HHHHHHHHHTTHHHHHHHTTSTTCCHHHHHHHHHHHHHHTTSGGGHHHHHHTTHHHHHHHHHHHH
T ss_pred cCCchH-----HHHHHHHHHccChHHHHHHhCccCchHHHHHHHHHHHHHccCHHHHHHHHHcCCHHHHHHHHhcc
Confidence 764321 134566888999999999999875 7999999999999999998889999999999999999864
No 32
>4db6_A Armadillo repeat protein; solenoid repeat, armadillo repeat motif, de novo protein; 1.80A {Synthetic construct} PDB: 4db9_A 4dba_A
Probab=99.87 E-value=1.6e-20 Score=183.69 Aligned_cols=193 Identities=19% Similarity=0.258 Sum_probs=171.2
Q ss_pred HcCCHHHHHHHHccCCCHHHHHHHHHHHHHhhc-CchhHHHHHhcCccHHHHHhhcCCCCHHHHHHHHHHHHHHh-cChh
Q 006114 446 EEGGLDALLLLLRTSQNTTILRVASGAIANLAM-NEMNQGLIMSRGGGQLLAKTASKTDDPQTLRMVAGALANLC-GNEK 523 (660)
Q Consensus 446 e~GgI~~Lv~LL~~s~d~~v~~~Aa~AL~nLA~-~~~n~~~Ive~g~I~~Ll~LL~~s~d~~v~~~Aa~aLanLa-~~~~ 523 (660)
..|+.+.|+.+|. ++|+.++..|+++|++|+. ++.++..+++.|+++.|+.+|.+ +++.++..|+++|+||+ .++.
T Consensus 10 ~~~~~~~l~~LL~-s~~~~v~~~a~~~L~~l~~~~~~~~~~i~~~g~i~~L~~lL~~-~~~~v~~~a~~~L~~l~~~~~~ 87 (210)
T 4db6_A 10 HGSELPQMVQQLN-SPDQQELQSALRKLSQIASGGNEQIQAVIDAGALPALVQLLSS-PNEQILQEALWALSNIASGGNE 87 (210)
T ss_dssp ---CHHHHHHHTT-CSCHHHHHHHHHHHHHHHTSCHHHHHHHHHTTHHHHHHHHTTC-SCHHHHHHHHHHHHHHTTSCHH
T ss_pred ccchhHHHHHHhc-CCCHHHHHHHHHHHHHHHcCCHHHHHHHHHcCCHHHHHHHHcC-CCHHHHHHHHHHHHHHhcCCcH
Confidence 4567999999997 7899999999999999995 58889999999999999999975 68999999999999999 6889
Q ss_pred HHHHHHhccHHHHHHHHhcCCCHHHHHHHHHHHHHhhccchhhhhhcchhhhHHHhhcChHHHHHHhhcCCCHHHHHHHH
Q 006114 524 LHTMLEEDGAIKALLAMVRSGNIDVIAQVARGLANFAKCESRAIVQGQRKGRSHLMEDSALEWLIANSKTNSASTRRHVE 603 (660)
Q Consensus 524 ~r~~iv~~G~V~~Lv~lL~s~~~~v~~~Al~aLanLA~~~~~~~aq~~~e~r~~Li~~G~v~~Lv~lL~s~d~~vr~~Aa 603 (660)
.+..+++.|+++.|+.++.++++.++..|+++|+||+.+++ ..+..+.+.|+++.|+.++.+.++.++..|+
T Consensus 88 ~~~~i~~~g~i~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~--------~~~~~~~~~~~i~~L~~ll~~~~~~v~~~a~ 159 (210)
T 4db6_A 88 QIQAVIDAGALPALVQLLSSPNEQILQEALWALSNIASGGN--------EQIQAVIDAGALPALVQLLSSPNEQILQEAL 159 (210)
T ss_dssp HHHHHHHTTCHHHHHHHTTCSCHHHHHHHHHHHHHHTTSCH--------HHHHHHHHTTHHHHHHHHTTCSCHHHHHHHH
T ss_pred HHHHHHHCCCHHHHHHHHcCCcHHHHHHHHHHHHHHHcCCH--------HHHHHHHHcCcHHHHHHHHcCCCHHHHHHHH
Confidence 99999999999999999999999999999999999997643 4556688999999999999999999999999
Q ss_pred HHHHHhhcC-CccHHHHHhcCcHHHHHHHHhcCChHHHHHHHHHHHh
Q 006114 604 LALCHLAQN-EDNARDFISRGGAKELVQISIESSREDIRNLAKKTMK 649 (660)
Q Consensus 604 ~AL~nLa~~-~e~~~~Ive~G~l~~Lv~lL~s~s~~~ir~~A~~~L~ 649 (660)
++|++|+.+ +.....+++.|+++.|+.++.++ .+.++..|..+|.
T Consensus 160 ~aL~~l~~~~~~~~~~~~~~g~i~~L~~ll~~~-~~~v~~~a~~aL~ 205 (210)
T 4db6_A 160 WALSNIASGGNEQKQAVKEAGALEKLEQLQSHE-NEKIQKEAQEALE 205 (210)
T ss_dssp HHHHHHHTSCHHHHHHHHHTTHHHHHHHGGGCS-CHHHHHHHHHHHH
T ss_pred HHHHHHHcCCcHHHHHHHHCCCHHHHHHHHhCC-CHHHHHHHHHHHH
Confidence 999999987 57788888999999999999864 4566777776664
No 33
>3tt9_A Plakophilin-2; cell adhesion; 1.55A {Homo sapiens}
Probab=99.85 E-value=6.3e-21 Score=193.45 Aligned_cols=194 Identities=20% Similarity=0.215 Sum_probs=165.6
Q ss_pred cchhhhhhcccCCCcc--ccccchhhh---hhc-CchhHHHHHhCCCHHHHHHhhCCCCHHHHHHHHHHHHHhhC-Cchh
Q 006114 368 KDYISKGSSRFGAPMS--LQKSNPSRE---LSG-QRATIAKICDEVGLPKILQLLTSEDPDVQIHAVKVVANLAA-EDIN 440 (660)
Q Consensus 368 ~g~i~~l~~~L~~~~~--~vr~~~~~~---laa-~~~~~~~I~e~ggI~~LV~LL~s~d~~vr~~Aa~aL~nLa~-~~en 440 (660)
.-.++.++..|.+.++ .++..+... ++. +.++...|++.|+||+||.+|.++++.++..|+++|.||+. +++|
T Consensus 7 ~~~i~~lV~lL~s~~~~~~~q~~Aa~~l~~L~~~~~~~r~~I~~~G~Ip~LV~lL~s~~~~vq~~Aa~aL~nLa~~~~~n 86 (233)
T 3tt9_A 7 EMTLERAVSMLEADHMLPSRISAAATFIQHECFQKSEARKRVNQLRGILKLLQLLKVQNEDVQRAVCGALRNLVFEDNDN 86 (233)
T ss_dssp CCCHHHHHHTCCSSCCCHHHHHHHHHHHHHHHHHCHHHHHHHHHTTHHHHHHHGGGCCCHHHHHHHHHHHHHHHTTCHHH
T ss_pred hccHHHHHHHhCCCCchHHHHHHHHHHHHHHHcCCcHHHHHHHHcCCHHHHHHHHcCCCHHHHHHHHHHHHHHHhCCHHH
Confidence 3467788888887776 555555444 564 45577789999999999999999999999999999999998 6899
Q ss_pred HHHHHHcCCHHHHHHHHccCCCHHHHHHHHHHHHHhhcCchhHHHHHhcCccHHHHHhhc---------------CCCCH
Q 006114 441 QEKIVEEGGLDALLLLLRTSQNTTILRVASGAIANLAMNEMNQGLIMSRGGGQLLAKTAS---------------KTDDP 505 (660)
Q Consensus 441 ~~~Ive~GgI~~Lv~LL~~s~d~~v~~~Aa~AL~nLA~~~~n~~~Ive~g~I~~Ll~LL~---------------~s~d~ 505 (660)
+..|++.||||+|+.+|.++.++.+++.|+++||||+.++.++..|+.. +||+|+.++. ...++
T Consensus 87 k~~I~~~GaI~~Lv~lL~~~~~~~~~e~a~~aL~nLS~~~~~k~~i~~~-~i~~Lv~ll~~p~sG~~~~~~~~~~~~~~~ 165 (233)
T 3tt9_A 87 KLEVAELNGVPRLLQVLKQTRDLETKKQITGLLWNLSSNDKLKNLMITE-ALLTLTENIIIPFSGWPEGDYPKANGLLDF 165 (233)
T ss_dssp HHHHHHTTHHHHHHHHHHHCCCHHHHHHHHHHHHHHHTSGGGHHHHHHH-HHHHHCCCCCHHHHCCCGGGCCCCCTTCCH
T ss_pred HHHHHHcCCHHHHHHHHccCCCHHHHHHHHHHHHHHHcChhhHHHHHhc-cHHHHHHHHhccccCCcccccccccccchH
Confidence 9999999999999999986678999999999999999999999999875 6999988653 11377
Q ss_pred HHHHHHHHHHHHHhc-ChhHHHHHHhc-cHHHHHHHHhcC------CCHHHHHHHHHHHHHhhcc
Q 006114 506 QTLRMVAGALANLCG-NEKLHTMLEED-GAIKALLAMVRS------GNIDVIAQVARGLANFAKC 562 (660)
Q Consensus 506 ~v~~~Aa~aLanLa~-~~~~r~~iv~~-G~V~~Lv~lL~s------~~~~v~~~Al~aLanLA~~ 562 (660)
.++.+|+++|+||+. ++++|..|.+. |+|+.|+.++++ .+...+++|+.+|+||+..
T Consensus 166 ~v~~na~~~L~nLss~~~~~R~~~r~~~Gli~~Lv~~l~~~~~~~~~~~k~~En~v~~L~nLs~~ 230 (233)
T 3tt9_A 166 DIFYNVTGCLRNMSSAGADGRKAMRRCDGLIDSLVHYVRGTIADYQPDDKATENCVCILHNLSYQ 230 (233)
T ss_dssp HHHHHHHHHHHHHTTSCHHHHHHHHTSTTHHHHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHCCC
T ss_pred HHHHHHHHHHHHHhcCCHHHHHHHHHCCCcHHHHHHHHHhhhhcccchhHHHHHHHHHHHHHHhh
Confidence 999999999999985 77999999986 678999999984 2557899999999999953
No 34
>2z6g_A B-catenin; FULL-length, beta-catenin, cell adhesion; 3.40A {Danio rerio}
Probab=99.85 E-value=2.8e-20 Score=219.00 Aligned_cols=272 Identities=20% Similarity=0.234 Sum_probs=233.2
Q ss_pred cchhhhhhcccCC-Cccccccchhhh---hhcCchhHHHHHhCCCHHHHHHhhCCCCHHHHHHHHHHHHHhhCC-chhHH
Q 006114 368 KDYISKGSSRFGA-PMSLQKSNPSRE---LSGQRATIAKICDEVGLPKILQLLTSEDPDVQIHAVKVVANLAAE-DINQE 442 (660)
Q Consensus 368 ~g~i~~l~~~L~~-~~~~vr~~~~~~---laa~~~~~~~I~e~ggI~~LV~LL~s~d~~vr~~Aa~aL~nLa~~-~en~~ 442 (660)
.+.++.++..|.+ ....++..++.. ++....+...++..|++|.|+.+|.++++.++..|+++|.+|+.. +..+.
T Consensus 191 ~~~i~~Lv~~L~~~~d~~vr~~Aa~aL~~Ls~~~~~~~~i~~~g~I~~Lv~lL~~~~~~v~~~A~~aL~nLa~~~~~~~~ 270 (780)
T 2z6g_A 191 PQMVSAIVRTMQNTNDVETARCTSGTLHNLSHHREGLLAIFKSGGIPALVNMLGSPVDSVLFHAITTLHNLLLHQEGAKM 270 (780)
T ss_dssp HHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHTSHHHHHHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHHHHSTTHHH
T ss_pred cChHHHHHHHHcCCCCHHHHHHHHHHHHHHhCCchhHHHHHHcCCHHHHHHHHcCCCHHHHHHHHHHHHHHhCCChhhHH
Confidence 4677777777753 255566666555 677777777888999999999999999999999999999999994 66788
Q ss_pred HHHHcCCHHHHHHHHccCCCHHHHHHHHHHHHHhhc-CchhHHHHHhcCccHHHHHhhcCCCCHHHHHHHHHHHHHHhcC
Q 006114 443 KIVEEGGLDALLLLLRTSQNTTILRVASGAIANLAM-NEMNQGLIMSRGGGQLLAKTASKTDDPQTLRMVAGALANLCGN 521 (660)
Q Consensus 443 ~Ive~GgI~~Lv~LL~~s~d~~v~~~Aa~AL~nLA~-~~~n~~~Ive~g~I~~Ll~LL~~s~d~~v~~~Aa~aLanLa~~ 521 (660)
.+++.|+++.|+.+|. +++..++..|+.+|++++. +++++..++..|+++.|+.++.+..+......++.+|++|+.+
T Consensus 271 ~v~~~g~v~~Lv~lL~-~~~~~v~~~a~~aL~~La~~~~e~~~~i~~~~~i~~Lv~lL~~~~~~~~~~~a~~aL~~Ls~~ 349 (780)
T 2z6g_A 271 AVRLAGGLQKMVALLN-KTNVKFLAITTDCLQILAYGNQESKLIILASGGPQALVNIMRTYTYEKLLWTTSRVLKVLSVC 349 (780)
T ss_dssp HHHHTTHHHHHHHGGG-CCCHHHHHHHHHHHHHHHTTCHHHHHHHHTTTHHHHHHHHHTTCCCHHHHHHHHHHHHHHHTS
T ss_pred HHHHcCCHHHHHHHHh-cCCHHHHHHHHHHHHHHhcCChHHHHHHHHcCCHHHHHHHHhcCCHHHHHHHHHHHHHHhhcC
Confidence 8889999999999998 6788999999999999996 4889999999999999999998766666777889999999999
Q ss_pred hhHHHHHHhccHHHHHHHHhcCCCHHHHHHHHHHHHHhhccchhhhhhcchhhhHHHhhcChHHHHHHhhcCCCHHHHHH
Q 006114 522 EKLHTMLEEDGAIKALLAMVRSGNIDVIAQVARGLANFAKCESRAIVQGQRKGRSHLMEDSALEWLIANSKTNSASTRRH 601 (660)
Q Consensus 522 ~~~r~~iv~~G~V~~Lv~lL~s~~~~v~~~Al~aLanLA~~~~~~~aq~~~e~r~~Li~~G~v~~Lv~lL~s~d~~vr~~ 601 (660)
+.++..++..|+++.|+.++.+.++.++..|+++|++|+...+. .....++++.|+.++.+.++.++..
T Consensus 350 ~~~~~~i~~~g~l~~Ll~lL~~~~~~~~~~a~~~L~~L~~~~~~-----------~~~~~~~i~~Lv~lL~~~d~~vr~~ 418 (780)
T 2z6g_A 350 SSNKPAIVEAGGMQALGLHLTDPSQRLVQNCLWTLRNLSDAATK-----------QEGMEGLLGTLVQLLGSDDINVVTC 418 (780)
T ss_dssp TTHHHHHHHTTHHHHHGGGTTCSCHHHHHHHHHHHHHHHTTCTT-----------CSCCHHHHHHHHHHTTCSCHHHHHH
T ss_pred hHHHHHHHHhchHHHHHHHHcCCchHHHHHHHHHHHHHhccchh-----------hhhhhhHHHHHHHHHcCCCHHHHHH
Confidence 99999999999999999999999999999999999999965432 1123579999999999999999999
Q ss_pred HHHHHHHhhcCC-ccHHHHHhcCcHHHHHHHHhcC-ChHHHHHHHHHHHhcC
Q 006114 602 VELALCHLAQNE-DNARDFISRGGAKELVQISIES-SREDIRNLAKKTMKSN 651 (660)
Q Consensus 602 Aa~AL~nLa~~~-e~~~~Ive~G~l~~Lv~lL~s~-s~~~ir~~A~~~L~~~ 651 (660)
|+++|++|+.++ .++..++..|+++.|+.++.+. +.+.++..|.++|.+.
T Consensus 419 A~~aL~~L~~~~~~~~~~i~~~g~i~~Lv~lL~~~~~~~~v~~~Al~aL~nL 470 (780)
T 2z6g_A 419 AAGILSNLTCNNYKNKMMVCQVGGIEALVRTVLRAGDREDITEPAICALRHL 470 (780)
T ss_dssp HHHHHHHHTSSCHHHHHHHHTTTHHHHHHHHHHHHTTCHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHhCCHHHHHHHHHCCCHHHHHHHHHccCCHHHHHHHHHHHHHHH
Confidence 999999999876 6788888999999999999874 4457888888777544
No 35
>2z6g_A B-catenin; FULL-length, beta-catenin, cell adhesion; 3.40A {Danio rerio}
Probab=99.85 E-value=2.9e-20 Score=218.85 Aligned_cols=271 Identities=19% Similarity=0.200 Sum_probs=222.3
Q ss_pred ccchhhhhhcccCCCccccccchhhh---hhcCchhHHHHHhCCCHHHHHHhhCCCCHHHHHHHHHHHHHhhC-CchhHH
Q 006114 367 TKDYISKGSSRFGAPMSLQKSNPSRE---LSGQRATIAKICDEVGLPKILQLLTSEDPDVQIHAVKVVANLAA-EDINQE 442 (660)
Q Consensus 367 ~~g~i~~l~~~L~~~~~~vr~~~~~~---laa~~~~~~~I~e~ggI~~LV~LL~s~d~~vr~~Aa~aL~nLa~-~~en~~ 442 (660)
..|+++.++..+.+....++....+. ++...... ....+++|.|+.+|.+++..++..|+++|++|+. .+.++.
T Consensus 358 ~~g~l~~Ll~lL~~~~~~~~~~a~~~L~~L~~~~~~~--~~~~~~i~~Lv~lL~~~d~~vr~~A~~aL~~L~~~~~~~~~ 435 (780)
T 2z6g_A 358 EAGGMQALGLHLTDPSQRLVQNCLWTLRNLSDAATKQ--EGMEGLLGTLVQLLGSDDINVVTCAAGILSNLTCNNYKNKM 435 (780)
T ss_dssp HTTHHHHHGGGTTCSCHHHHHHHHHHHHHHHTTCTTC--SCCHHHHHHHHHHTTCSCHHHHHHHHHHHHHHTSSCHHHHH
T ss_pred HhchHHHHHHHHcCCchHHHHHHHHHHHHHhccchhh--hhhhhHHHHHHHHHcCCCHHHHHHHHHHHHHHHhCCHHHHH
Confidence 34678888888877665555555444 33332211 1123579999999999999999999999999999 467889
Q ss_pred HHHHcCCHHHHHHHHccCCC-HHHHHHHHHHHHHhhcC-ch---hHHHHHhcCccHHHHHhhcCCCCHHHHHHHHHHHHH
Q 006114 443 KIVEEGGLDALLLLLRTSQN-TTILRVASGAIANLAMN-EM---NQGLIMSRGGGQLLAKTASKTDDPQTLRMVAGALAN 517 (660)
Q Consensus 443 ~Ive~GgI~~Lv~LL~~s~d-~~v~~~Aa~AL~nLA~~-~~---n~~~Ive~g~I~~Ll~LL~~s~d~~v~~~Aa~aLan 517 (660)
.+++.||++.|+.+|..+.+ +.++..|+++|+||+.. ++ .+..+...|+++.|+.+|.+..++.++..|+|+|+|
T Consensus 436 ~i~~~g~i~~Lv~lL~~~~~~~~v~~~Al~aL~nL~~~~~~~~~~~~~v~~~~~l~~L~~lL~~~~~~~v~~~A~~aL~n 515 (780)
T 2z6g_A 436 MVCQVGGIEALVRTVLRAGDREDITEPAICALRHLTSRHQDAEMAQNAVRLHYGLPVVVKLLHPPSHWPLIKATVGLIRN 515 (780)
T ss_dssp HHHTTTHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTSSSTTHHHHHHHHHHTTCHHHHHHTTSTTCCHHHHHHHHHHHHH
T ss_pred HHHHCCCHHHHHHHHHccCCHHHHHHHHHHHHHHHHhcCchHHHHHHHHHHcCCHHHHHHHhcCCChHHHHHHHHHHHHH
Confidence 99999999999999985333 48999999999999875 33 366888999999999999875556999999999999
Q ss_pred HhcChhHHHHHHhccHHHHHHHHhcCCC----------------------HHHHHHHHHHHHHhhccchhhhhhcchhhh
Q 006114 518 LCGNEKLHTMLEEDGAIKALLAMVRSGN----------------------IDVIAQVARGLANFAKCESRAIVQGQRKGR 575 (660)
Q Consensus 518 La~~~~~r~~iv~~G~V~~Lv~lL~s~~----------------------~~v~~~Al~aLanLA~~~~~~~aq~~~e~r 575 (660)
|+.++..+..+++.|+++.|+.++.+++ .+++..|+.+|++|+.+ +..+
T Consensus 516 La~~~~~~~~i~~~g~i~~Lv~lL~~~~~~~~~~aa~al~nq~~~~~~~~~~v~~~a~~aL~~La~~---------~~~~ 586 (780)
T 2z6g_A 516 LALCPANHAPLREQGAIPRLVQLLVRAHQDTQRRTSMGGTQQQFVEGVRMEEIVEACTGALHILARD---------IHNR 586 (780)
T ss_dssp HHSSHHHHHHHHHTTHHHHHHHHHHHHHHHHHHTTC------CCSTTCCHHHHHHHHHHHHHHHTTS---------HHHH
T ss_pred HhcCHHHHHHHHHCCCHHHHHHHHHhcchhHHHHHhhccccchhhcccChHHHHHHHHHHHHHHhcC---------hhhH
Confidence 9999999999999999999999997543 45677888889988853 3566
Q ss_pred HHHhhcChHHHHHHhhcCCCHHHHHHHHHHHHHhhcCCccHHHHHhcCcHHHHHHHHhcCChHHHHHHHHHHHh
Q 006114 576 SHLMEDSALEWLIANSKTNSASTRRHVELALCHLAQNEDNARDFISRGGAKELVQISIESSREDIRNLAKKTMK 649 (660)
Q Consensus 576 ~~Li~~G~v~~Lv~lL~s~d~~vr~~Aa~AL~nLa~~~e~~~~Ive~G~l~~Lv~lL~s~s~~~ir~~A~~~L~ 649 (660)
..+...|++++|+.++.+.++.++..|+.+|++|+.++..+..+.+.|+++.|+.++.+.+ +.++..|..+|.
T Consensus 587 ~~l~~~~~i~~Lv~lL~~~~~~v~~~a~~aL~~L~~~~~~~~~i~~~g~i~~L~~Ll~~~~-~~Vr~~A~~aL~ 659 (780)
T 2z6g_A 587 IVIRGLNTIPLFVQLLYSPIENIQRVAAGVLCELAQDKEAAEAIEAEGATAPLTELLHSRN-EGVATYAAAVLF 659 (780)
T ss_dssp HHHHHTCCHHHHHHGGGCSCHHHHHHHHHHHHHHHTSHHHHHHHHHTTCHHHHHHGGGCSC-HHHHHHHHHHHH
T ss_pred HHHHHCCcHHHHHHHHcCCCHHHHHHHHHHHHHHhcCHHHHHHHHHCCCHHHHHHHHcCCC-HHHHHHHHHHHH
Confidence 7788999999999999999999999999999999988888999999999999999998755 456666665553
No 36
>1xqr_A HSPBP1 protein; armadillo repeat, superhelical twist, chaperone; 2.10A {Homo sapiens} SCOP: a.118.1.21 PDB: 1xqs_A*
Probab=99.82 E-value=1.6e-19 Score=189.54 Aligned_cols=171 Identities=20% Similarity=0.214 Sum_probs=156.1
Q ss_pred hhcCchhHHHHHhCCCHHHHHH-hhCCCCHHHHHHHHHHHHHhhC-CchhHHHHHHcCCHHHHHHHHccCCCHHHHHHHH
Q 006114 393 LSGQRATIAKICDEVGLPKILQ-LLTSEDPDVQIHAVKVVANLAA-EDINQEKIVEEGGLDALLLLLRTSQNTTILRVAS 470 (660)
Q Consensus 393 laa~~~~~~~I~e~ggI~~LV~-LL~s~d~~vr~~Aa~aL~nLa~-~~en~~~Ive~GgI~~Lv~LL~~s~d~~v~~~Aa 470 (660)
+.....+...++..||+|.|+. +|.++++.++..|+++|++++. ++..+..+++.||+|+|+.+|.+++++.+++.|+
T Consensus 67 lv~~~dna~~~~~~G~l~~Lv~~lL~s~~~~vr~~Aa~~Lg~ia~~n~~~~~~vv~~g~l~~Ll~LL~~~~~~~v~~~A~ 146 (296)
T 1xqr_A 67 LCENMDNAADFCQLSGMHLLVGRYLEAGAAGLRWRAAQLIGTCSQNVAAIQEQVLGLGALRKLLRLLDRDACDTVRVKAL 146 (296)
T ss_dssp HHTSHHHHHHHHHTTHHHHHHHTTTTCSSHHHHHHHHHHHHHHHTTCHHHHHHHHHTTHHHHHHHHHHHCSCHHHHHHHH
T ss_pred HHhChhhHHHHHHcCCHHHHHHHHHcCCCHHHHHHHHHHHHHHHhCCHHHHHHHHHCCCHHHHHHHHccCCCHHHHHHHH
Confidence 4555566777888999999999 9999999999999999999999 6778999999999999999998667899999999
Q ss_pred HHHHHhhcC-chhHHHHHhcCccHHHHHhhcCCCCHHHHHHHHHHHHHHh-cChhHHHHHHhccHHHHHHHHhcCCCHHH
Q 006114 471 GAIANLAMN-EMNQGLIMSRGGGQLLAKTASKTDDPQTLRMVAGALANLC-GNEKLHTMLEEDGAIKALLAMVRSGNIDV 548 (660)
Q Consensus 471 ~AL~nLA~~-~~n~~~Ive~g~I~~Ll~LL~~s~d~~v~~~Aa~aLanLa-~~~~~r~~iv~~G~V~~Lv~lL~s~~~~v 548 (660)
++|+||+.+ +.....++..|++|.|+.+|.+ +++.++..|+|+|++|+ .+++.+..+++.|+++.|+.+|.++++.+
T Consensus 147 ~ALsnl~~~~~~~~~~~~~~ggi~~L~~lL~~-~d~~v~~~A~~aLs~L~~~~~~~~~~vv~~g~i~~Lv~LL~~~d~~v 225 (296)
T 1xqr_A 147 FAISCLVREQEAGLLQFLRLDGFSVLMRAMQQ-QVQKLKVKSAFLLQNLLVGHPEHKGTLCSMGMVQQLVALVRTEHSPF 225 (296)
T ss_dssp HHHHHHHTTCHHHHHHHHHTTHHHHHHHHHHS-SCHHHHHHHHHHHHHHHHHCGGGHHHHHHTTHHHHHHHHHTSCCSTH
T ss_pred HHHHHHHcCCcHHHHHHHHCCCHHHHHHHHcC-CCHHHHHHHHHHHHHHHhCChHHHHHHHHcCCHHHHHHHHcCCChhH
Confidence 999999976 6777889999999999999975 79999999999999998 67889999999999999999999999999
Q ss_pred HHHHHHHHHHhhccch
Q 006114 549 IAQVARGLANFAKCES 564 (660)
Q Consensus 549 ~~~Al~aLanLA~~~~ 564 (660)
+..|+.+|++|+...+
T Consensus 226 ~~~al~aL~~l~~~~~ 241 (296)
T 1xqr_A 226 HEHVLGALCSLVTDFP 241 (296)
T ss_dssp HHHHHHHHHHHHTTCH
T ss_pred HHHHHHHHHHHHhCCh
Confidence 9999999999997643
No 37
>3opb_A SWI5-dependent HO expression protein 4; heat and arm fold, myosin folding and function, myosin bindi protein, protein binding; 2.90A {Saccharomyces cerevisiae}
Probab=99.82 E-value=2.5e-19 Score=207.07 Aligned_cols=241 Identities=11% Similarity=0.118 Sum_probs=192.8
Q ss_pred hHHHHHhCCCHHHHHHhhCCCCHHHHHHHHHHHHHhhCCchhHHHHHHcCCHHHHHHHHccCCCH--HHHHHHHHHHHHh
Q 006114 399 TIAKICDEVGLPKILQLLTSEDPDVQIHAVKVVANLAAEDINQEKIVEEGGLDALLLLLRTSQNT--TILRVASGAIANL 476 (660)
Q Consensus 399 ~~~~I~e~ggI~~LV~LL~s~d~~vr~~Aa~aL~nLa~~~en~~~Ive~GgI~~Lv~LL~~s~d~--~v~~~Aa~AL~nL 476 (660)
+...+++.|++|.|+.++.++++.++..|+++|.+|+.++.+|..+++.||+++|+.+|.++++. .++..|+.||++|
T Consensus 449 ~~~~l~eaGvIp~Lv~Ll~S~s~~~re~A~~aL~nLS~d~~~R~~lvqqGal~~LL~lL~s~~~~~~~~k~~AA~ALArL 528 (778)
T 3opb_A 449 NEKYILRTELISFLKREMHNLSPNCKQQVVRIIYNITRSKNFIPQLAQQGAVKIILEYLANKQDIGEPIRILGCRALTRM 528 (778)
T ss_dssp HHHHTTTTTHHHHHHHHGGGSCHHHHHHHHHHHHHHHTSGGGHHHHHHTTHHHHHHHHTTCC---CCHHHHHHHHHHHHH
T ss_pred HHHHHHHCcCHHHHHHHHcCCCHHHHHHHHHHHHHHcCCHHHHHHHHHCCCHHHHHHHHhcCCCcchHHHHHHHHHHHHH
Confidence 34567899999999999999999999999999999999999999999999999999999855433 2789999999999
Q ss_pred hcCchhHHHHHh---cCccHHHHHhhcCCCC------------HHH-HHHHHHHHHHHhcCh-----hHHHHHHhc-cHH
Q 006114 477 AMNEMNQGLIMS---RGGGQLLAKTASKTDD------------PQT-LRMVAGALANLCGNE-----KLHTMLEED-GAI 534 (660)
Q Consensus 477 A~~~~n~~~Ive---~g~I~~Ll~LL~~s~d------------~~v-~~~Aa~aLanLa~~~-----~~r~~iv~~-G~V 534 (660)
+...+....+.. .|+||+|+.+|...+. +.. ...|+.||+|||..+ +.+..|+.. |++
T Consensus 529 lis~np~~~f~~~~~~~aI~pLv~LL~~~~~~~~~~l~~~~~~~~l~~feAL~ALTNLAs~~~n~~E~~r~~Ii~~~ga~ 608 (778)
T 3opb_A 529 LIFTNPGLIFKKYSALNAIPFLFELLPRSTPVDDNPLHNDEQIKLTDNYEALLALTNLASSETSDGEEVCKHIVSTKVYW 608 (778)
T ss_dssp HHTSCHHHHSSSSCSTTHHHHHHHTSCCSSSCSSCC---CCCCCHHHHHHHHHHHHHHHHCCSHHHHHHHHHHHHSHHHH
T ss_pred HhcCCHHHHcCCCccccchHHHHHHcCCCCCcccccccccccccHHHHHHHHHHHHHHhcCCcccchHHHHHHHHhcCHH
Confidence 865433333311 4899999999972111 112 668999999999765 568889995 999
Q ss_pred HHHHHHhcCCCHHHHHHHHHHHHHhhccchhhhhhcchhhh-HHHhh------cChHHHHHHhhcCCCHHHHHHHHHHHH
Q 006114 535 KALLAMVRSGNIDVIAQVARGLANFAKCESRAIVQGQRKGR-SHLME------DSALEWLIANSKTNSASTRRHVELALC 607 (660)
Q Consensus 535 ~~Lv~lL~s~~~~v~~~Al~aLanLA~~~~~~~aq~~~e~r-~~Li~------~G~v~~Lv~lL~s~d~~vr~~Aa~AL~ 607 (660)
+.|..++.+.++.++..|+.+|+||+.+. +++ ..+.. .+.+++|+.++.++|..+|++|+|||+
T Consensus 609 ~~L~~LL~s~n~~VrrAA~elI~NL~~~~---------e~i~~k~~~~~~~~~~~rL~lLV~Ll~s~D~~~r~AAagALA 679 (778)
T 3opb_A 609 STIENLMLDENVPLQRSTLELISNMMSHP---------LTIAAKFFNLENPQSLRNFNILVKLLQLSDVESQRAVAAIFA 679 (778)
T ss_dssp HHHHHGGGCSSHHHHHHHHHHHHHHHTSG---------GGTGGGTSCCSSHHHHHHHHHHHHGGGCSCHHHHHHHHHHHH
T ss_pred HHHHHHHhCCCHHHHHHHHHHHHHHhCCc---------HHHHHHHHhhcCchhhccHHHHHHHHcCCCHHHHHHHHHHHH
Confidence 99999999999999999999999999653 222 12221 235899999999999999999999999
Q ss_pred Hhh-cCCccHHHHHhc-CcHHHHHHHHhcC-ChHHHHHHHHHHH
Q 006114 608 HLA-QNEDNARDFISR-GGAKELVQISIES-SREDIRNLAKKTM 648 (660)
Q Consensus 608 nLa-~~~e~~~~Ive~-G~l~~Lv~lL~s~-s~~~ir~~A~~~L 648 (660)
+++ .++..+..+++. |+++.|+.++.+. +++.++..+..++
T Consensus 680 nLts~~~~ia~~ll~~~~gi~~Ll~lL~~~~~~~~l~~R~~~~l 723 (778)
T 3opb_A 680 NIATTIPLIAKELLTKKELIENAIQVFADQIDDIELRQRLLMLF 723 (778)
T ss_dssp HHHHHCHHHHHHHTTCHHHHHHHHHHHHHTTTCHHHHHHHHHHH
T ss_pred HhcCCChHHHHHHHHccccHHHHHHHHhccCCCHHHHHHHHHHH
Confidence 996 577788888886 8999999999984 4455555554333
No 38
>3opb_A SWI5-dependent HO expression protein 4; heat and arm fold, myosin folding and function, myosin bindi protein, protein binding; 2.90A {Saccharomyces cerevisiae}
Probab=99.71 E-value=2.9e-17 Score=189.84 Aligned_cols=265 Identities=14% Similarity=0.058 Sum_probs=207.7
Q ss_pred cccchhhhhhcccCCCccccccchhhh---hhcCchhHHHHHhCCCHHHHHHhhCCCCHH---HHHHHHHHHHHhhCCch
Q 006114 366 YTKDYISKGSSRFGAPMSLQKSNPSRE---LSGQRATIAKICDEVGLPKILQLLTSEDPD---VQIHAVKVVANLAAEDI 439 (660)
Q Consensus 366 ~~~g~i~~l~~~L~~~~~~vr~~~~~~---laa~~~~~~~I~e~ggI~~LV~LL~s~d~~---vr~~Aa~aL~nLa~~~e 439 (660)
.+.|.++.++..+.+..+.++..+.++ ++....++..++++||++.|+.+|.+.... ++..|+.+|++|+....
T Consensus 454 ~eaGvIp~Lv~Ll~S~s~~~re~A~~aL~nLS~d~~~R~~lvqqGal~~LL~lL~s~~~~~~~~k~~AA~ALArLlis~n 533 (778)
T 3opb_A 454 LRTELISFLKREMHNLSPNCKQQVVRIIYNITRSKNFIPQLAQQGAVKIILEYLANKQDIGEPIRILGCRALTRMLIFTN 533 (778)
T ss_dssp TTTTHHHHHHHHGGGSCHHHHHHHHHHHHHHHTSGGGHHHHHHTTHHHHHHHHTTCC---CCHHHHHHHHHHHHHHHTSC
T ss_pred HHCcCHHHHHHHHcCCCHHHHHHHHHHHHHHcCCHHHHHHHHHCCCHHHHHHHHhcCCCcchHHHHHHHHHHHHHHhcCC
Confidence 334788888888888888888888777 788888999999999999999999877554 89999999999986433
Q ss_pred hHHHHHH---cCCHHHHHHHHccCCCH-------------HHHHHHHHHHHHhhcCc-----hhHHHHHhc-CccHHHHH
Q 006114 440 NQEKIVE---EGGLDALLLLLRTSQNT-------------TILRVASGAIANLAMNE-----MNQGLIMSR-GGGQLLAK 497 (660)
Q Consensus 440 n~~~Ive---~GgI~~Lv~LL~~s~d~-------------~v~~~Aa~AL~nLA~~~-----~n~~~Ive~-g~I~~Ll~ 497 (660)
....|.. .|+||+|+.+|..+++. --+..|+.||.|||..+ +.+..|+.. |++|.|..
T Consensus 534 p~~~f~~~~~~~aI~pLv~LL~~~~~~~~~~l~~~~~~~~l~~feAL~ALTNLAs~~~n~~E~~r~~Ii~~~ga~~~L~~ 613 (778)
T 3opb_A 534 PGLIFKKYSALNAIPFLFELLPRSTPVDDNPLHNDEQIKLTDNYEALLALTNLASSETSDGEEVCKHIVSTKVYWSTIEN 613 (778)
T ss_dssp HHHHSSSSCSTTHHHHHHHTSCCSSSCSSCC---CCCCCHHHHHHHHHHHHHHHHCCSHHHHHHHHHHHHSHHHHHHHHH
T ss_pred HHHHcCCCccccchHHHHHHcCCCCCcccccccccccccHHHHHHHHHHHHHHhcCCcccchHHHHHHHHhcCHHHHHHH
Confidence 3333321 38899999999732221 12667999999999987 347778884 99999999
Q ss_pred hhcCCCCHHHHHHHHHHHHHHhcChhHH-HHHHh------ccHHHHHHHHhcCCCHHHHHHHHHHHHHhhccchhhhhhc
Q 006114 498 TASKTDDPQTLRMVAGALANLCGNEKLH-TMLEE------DGAIKALLAMVRSGNIDVIAQVARGLANFAKCESRAIVQG 570 (660)
Q Consensus 498 LL~~s~d~~v~~~Aa~aLanLa~~~~~r-~~iv~------~G~V~~Lv~lL~s~~~~v~~~Al~aLanLA~~~~~~~aq~ 570 (660)
++.+ +++.+++.|+++|+||+.++... ..+.. .|.++.|+.++.+.+.+++..|+++|+|++..++
T Consensus 614 LL~s-~n~~VrrAA~elI~NL~~~~e~i~~k~~~~~~~~~~~rL~lLV~Ll~s~D~~~r~AAagALAnLts~~~------ 686 (778)
T 3opb_A 614 LMLD-ENVPLQRSTLELISNMMSHPLTIAAKFFNLENPQSLRNFNILVKLLQLSDVESQRAVAAIFANIATTIP------ 686 (778)
T ss_dssp GGGC-SSHHHHHHHHHHHHHHHTSGGGTGGGTSCCSSHHHHHHHHHHHHGGGCSCHHHHHHHHHHHHHHHHHCH------
T ss_pred HHhC-CCHHHHHHHHHHHHHHhCCcHHHHHHHHhhcCchhhccHHHHHHHHcCCCHHHHHHHHHHHHHhcCCCh------
Confidence 9975 78899999999999999988864 34432 2358999999999999999999999999975443
Q ss_pred chhhhHHHhhc-ChHHHHHHhhcC--CCHHHHHHHHHHHHHhhc----CC--ccHHHHH-hcCcHHHHHHHHhcCChHH
Q 006114 571 QRKGRSHLMED-SALEWLIANSKT--NSASTRRHVELALCHLAQ----NE--DNARDFI-SRGGAKELVQISIESSRED 639 (660)
Q Consensus 571 ~~e~r~~Li~~-G~v~~Lv~lL~s--~d~~vr~~Aa~AL~nLa~----~~--e~~~~Iv-e~G~l~~Lv~lL~s~s~~~ 639 (660)
.....+... ++++.++.++.+ +++.++..++.+++||+. +. +....+. .......|..++.+++.+.
T Consensus 687 --~ia~~ll~~~~gi~~Ll~lL~~~~~~~~l~~R~~~~l~NL~~~~~~~~~~~~~~~~~~~~~l~~~l~~~lk~~~~~~ 763 (778)
T 3opb_A 687 --LIAKELLTKKELIENAIQVFADQIDDIELRQRLLMLFFGLFEVIPDNGTNEVYPLLQENQKLKDALNMSLKRGDSGP 763 (778)
T ss_dssp --HHHHHHTTCHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHTTCCSTTTTSCCHHHHSCHHHHHHHHHHHSSSSSCS
T ss_pred --HHHHHHHHccccHHHHHHHHhccCCCHHHHHHHHHHHHHHHHhhccCCChHHHHHHhcChHHHHHHHHHHhCCCchH
Confidence 333456665 899999999998 899999999999999985 11 3344555 4567788888998876554
No 39
>3ltm_A Alpha-REP4; protein engineering, heat-like repeat, protein binding; HET: 1PE 12P; 2.15A {Synthetic}
Probab=99.42 E-value=1.6e-11 Score=120.03 Aligned_cols=185 Identities=16% Similarity=0.190 Sum_probs=153.2
Q ss_pred CCCHHHHHHhhCCCCHHHHHHHHHHHHHhhCCchhHHHHHHcCCHHHHHHHHccCCCHHHHHHHHHHHHHhhcCchhHHH
Q 006114 406 EVGLPKILQLLTSEDPDVQIHAVKVVANLAAEDINQEKIVEEGGLDALLLLLRTSQNTTILRVASGAIANLAMNEMNQGL 485 (660)
Q Consensus 406 ~ggI~~LV~LL~s~d~~vr~~Aa~aL~nLa~~~en~~~Ive~GgI~~Lv~LL~~s~d~~v~~~Aa~AL~nLA~~~~n~~~ 485 (660)
.+.++.|+.+|.+++..+|..|+.+|+.+.. .++++.|+.+|. ++++.++..|+.+|+.+..
T Consensus 18 ~~~~~~L~~~L~~~~~~vR~~A~~~L~~~~~----------~~~~~~L~~~l~-~~~~~vr~~a~~aL~~~~~------- 79 (211)
T 3ltm_A 18 PEKVEMYIKNLQDDSYYVRRAAAYALGKIGD----------ERAVEPLIKALK-DEDAWVRRAAADALGQIGD------- 79 (211)
T ss_dssp GGGHHHHHHHTTCSSHHHHHHHHHHHHHHCC----------GGGHHHHHHHTT-CSCHHHHHHHHHHHHHHCC-------
T ss_pred HhHHHHHHHHHcCCCHHHHHHHHHHHHHhCC----------ccHHHHHHHHHc-CCCHHHHHHHHHHHHhhCC-------
Confidence 4679999999999999999999999977643 357999999997 7799999999999998742
Q ss_pred HHhcCccHHHHHhhcCCCCHHHHHHHHHHHHHHhcChhHHHHHHhccHHHHHHHHhcCCCHHHHHHHHHHHHHhhccchh
Q 006114 486 IMSRGGGQLLAKTASKTDDPQTLRMVAGALANLCGNEKLHTMLEEDGAIKALLAMVRSGNIDVIAQVARGLANFAKCESR 565 (660)
Q Consensus 486 Ive~g~I~~Ll~LL~~s~d~~v~~~Aa~aLanLa~~~~~r~~iv~~G~V~~Lv~lL~s~~~~v~~~Al~aLanLA~~~~~ 565 (660)
.++++.|+.+|.+ +++.++..|+++|+.+.. .++++.|+.++.++++.|+..|+.+|+.+..
T Consensus 80 ---~~~~~~L~~~l~~-~~~~vr~~a~~aL~~~~~----------~~~~~~L~~~l~d~~~~vr~~a~~aL~~~~~---- 141 (211)
T 3ltm_A 80 ---ERAVEPLIKALKD-EDGWVRQSAAVALGQIGD----------ERAVEPLIKALKDEDWFVRIAAAFALGEIGD---- 141 (211)
T ss_dssp ---GGGHHHHHHHTTC-SSHHHHHHHHHHHHHHCC----------GGGHHHHHHHTTCSSHHHHHHHHHHHHHHCC----
T ss_pred ---HHHHHHHHHHHcC-CCHHHHHHHHHHHHHhCc----------HHHHHHHHHHHhCCCHHHHHHHHHHHHHcCC----
Confidence 3578899999965 789999999999988753 3678999999999999999999999998852
Q ss_pred hhhhcchhhhHHHhhcChHHHHHHhhcCCCHHHHHHHHHHHHHhhcCCccHHHHHhcCcHHHHHHHHhcCChHHHHHHHH
Q 006114 566 AIVQGQRKGRSHLMEDSALEWLIANSKTNSASTRRHVELALCHLAQNEDNARDFISRGGAKELVQISIESSREDIRNLAK 645 (660)
Q Consensus 566 ~~aq~~~e~r~~Li~~G~v~~Lv~lL~s~d~~vr~~Aa~AL~nLa~~~e~~~~Ive~G~l~~Lv~lL~s~s~~~ir~~A~ 645 (660)
..+++.|+.++.+.++.||..|+.+|..+.. ..+++.|..++.+++ +.+|..|.
T Consensus 142 ---------------~~~~~~L~~~l~d~~~~vr~~a~~aL~~~~~----------~~~~~~L~~~l~d~~-~~vr~~A~ 195 (211)
T 3ltm_A 142 ---------------ERAVEPLIKALKDEDGWVRQSAADALGEIGG----------ERVRAAMEKLAETGT-GFARKVAV 195 (211)
T ss_dssp ---------------GGGHHHHHHHTTCSSHHHHHHHHHHHHHHCS----------HHHHHHHHHHHHHCC-HHHHHHHH
T ss_pred ---------------HHHHHHHHHHHcCCCHHHHHHHHHHHHHhCc----------hhHHHHHHHHHhCCC-HHHHHHHH
Confidence 2478899999999999999999999998853 446788888888654 56888888
Q ss_pred HHHhcCc
Q 006114 646 KTMKSNP 652 (660)
Q Consensus 646 ~~L~~~p 652 (660)
.+|....
T Consensus 196 ~aL~~~~ 202 (211)
T 3ltm_A 196 NYLETHK 202 (211)
T ss_dssp HHHHC--
T ss_pred HHHHhcC
Confidence 8886544
No 40
>1oyz_A Hypothetical protein YIBA; structural genomics, PSI, protein structure initiative, northeast structural genomics consortium, NESG; 2.10A {Escherichia coli} SCOP: a.118.1.16
Probab=99.39 E-value=5.1e-12 Score=129.06 Aligned_cols=198 Identities=11% Similarity=0.023 Sum_probs=143.8
Q ss_pred cchhhhhhcccCCCccccccchhhhhhcCchhHHHHHhCCCHHHHHHhhCCCCHHHHHHHHHHHHHhhCCchhHHHHHHc
Q 006114 368 KDYISKGSSRFGAPMSLQKSNPSRELSGQRATIAKICDEVGLPKILQLLTSEDPDVQIHAVKVVANLAAEDINQEKIVEE 447 (660)
Q Consensus 368 ~g~i~~l~~~L~~~~~~vr~~~~~~laa~~~~~~~I~e~ggI~~LV~LL~s~d~~vr~~Aa~aL~nLa~~~en~~~Ive~ 447 (660)
.+.++.++..|.+..+.+|..+.+.++.. ...+.++.|+.+|.++++.+|..|+++|+.+...+.....
T Consensus 22 ~~~i~~L~~~L~~~~~~vr~~A~~~L~~~-------~~~~~~~~L~~~l~d~~~~vR~~A~~aL~~l~~~~~~~~~---- 90 (280)
T 1oyz_A 22 KLNDDELFRLLDDHNSLKRISSARVLQLR-------GGQDAVRLAIEFCSDKNYIRRDIGAFILGQIKICKKCEDN---- 90 (280)
T ss_dssp TSCHHHHHHHTTCSSHHHHHHHHHHHHHH-------CCHHHHHHHHHHHTCSSHHHHHHHHHHHHHSCCCTTTHHH----
T ss_pred HhhHHHHHHHHHcCCHHHHHHHHHHHHcc-------CCchHHHHHHHHHcCCCHHHHHHHHHHHHHhccccccchH----
Confidence 35678888888888888887766664321 1234688999999999999999999999988754322110
Q ss_pred CCHHHHHHHHccCCCHHHHHHHHHHHHHhhcC-chhHHHHHhcCccHHHHHhhcCCCCHHHHHHHHHHHHHHhcChhHHH
Q 006114 448 GGLDALLLLLRTSQNTTILRVASGAIANLAMN-EMNQGLIMSRGGGQLLAKTASKTDDPQTLRMVAGALANLCGNEKLHT 526 (660)
Q Consensus 448 GgI~~Lv~LL~~s~d~~v~~~Aa~AL~nLA~~-~~n~~~Ive~g~I~~Ll~LL~~s~d~~v~~~Aa~aLanLa~~~~~r~ 526 (660)
.++.|...+..++++.++..|+.+|+.+... +.. ...+++.|+..+.+ +++.++..|+++|+++..
T Consensus 91 -l~~~L~~~~~~d~~~~vr~~a~~aL~~l~~~~~~~-----~~~~~~~L~~~l~d-~~~~vR~~a~~aL~~~~~------ 157 (280)
T 1oyz_A 91 -VFNILNNMALNDKSACVRATAIESTAQRCKKNPIY-----SPKIVEQSQITAFD-KSTNVRRATAFAISVIND------ 157 (280)
T ss_dssp -HHHHHHHHHHHCSCHHHHHHHHHHHHHHHHHCGGG-----HHHHHHHHHHHTTC-SCHHHHHHHHHHHHTC--------
T ss_pred -HHHHHHHHHhcCCCHHHHHHHHHHHHHHhccCCcc-----cHHHHHHHHHHhhC-CCHHHHHHHHHHHHhcCC------
Confidence 2334443333478999999999999998632 211 12457888888864 789999999999987653
Q ss_pred HHHhccHHHHHHHHhcCCCHHHHHHHHHHHHHhhccchhhhhhcchhhhHHHhhcChHHHHHHhhcCCCHHHHHHHHHHH
Q 006114 527 MLEEDGAIKALLAMVRSGNIDVIAQVARGLANFAKCESRAIVQGQRKGRSHLMEDSALEWLIANSKTNSASTRRHVELAL 606 (660)
Q Consensus 527 ~iv~~G~V~~Lv~lL~s~~~~v~~~Al~aLanLA~~~~~~~aq~~~e~r~~Li~~G~v~~Lv~lL~s~d~~vr~~Aa~AL 606 (660)
.++++.|+.++.++++.|+..|+.+|+.+...+ ..+++.|+.++.+.++.+|..|+++|
T Consensus 158 ----~~~~~~L~~~l~d~~~~vr~~a~~aL~~~~~~~-----------------~~~~~~L~~~l~d~~~~vR~~A~~aL 216 (280)
T 1oyz_A 158 ----KATIPLLINLLKDPNGDVRNWAAFAININKYDN-----------------SDIRDCFVEMLQDKNEEVRIEAIIGL 216 (280)
T ss_dssp -----CCHHHHHHHHTCSSHHHHHHHHHHHHHHTCCC-----------------HHHHHHHHHHTTCSCHHHHHHHHHHH
T ss_pred ----HHHHHHHHHHHcCCCHHHHHHHHHHHHhhccCc-----------------HHHHHHHHHHhcCCCHHHHHHHHHHH
Confidence 357899999999999999999999998885322 23567777778777888888888888
Q ss_pred HHhh
Q 006114 607 CHLA 610 (660)
Q Consensus 607 ~nLa 610 (660)
+.++
T Consensus 217 ~~~~ 220 (280)
T 1oyz_A 217 SYRK 220 (280)
T ss_dssp HHTT
T ss_pred HHhC
Confidence 7775
No 41
>3ltj_A Alpharep-4; protein engineering, heat-like repeat, protein binding; 1.80A {Synthetic}
Probab=99.38 E-value=2.8e-11 Score=117.41 Aligned_cols=186 Identities=17% Similarity=0.197 Sum_probs=155.1
Q ss_pred CCHHHHHHhhCCCCHHHHHHHHHHHHHhhCCchhHHHHHHcCCHHHHHHHHccCCCHHHHHHHHHHHHHhhcCchhHHHH
Q 006114 407 VGLPKILQLLTSEDPDVQIHAVKVVANLAAEDINQEKIVEEGGLDALLLLLRTSQNTTILRVASGAIANLAMNEMNQGLI 486 (660)
Q Consensus 407 ggI~~LV~LL~s~d~~vr~~Aa~aL~nLa~~~en~~~Ive~GgI~~Lv~LL~~s~d~~v~~~Aa~AL~nLA~~~~n~~~I 486 (660)
++.+.++.+|.+++..+|..|+.+|+.+.. .++++.|+.+|. ++++.++..|+.+|+.+..
T Consensus 14 ~~~~~~i~~L~~~~~~vr~~A~~~L~~~~~----------~~~~~~L~~~l~-~~~~~vr~~a~~~L~~~~~-------- 74 (201)
T 3ltj_A 14 EKVEMYIKNLQDDSYYVRRAAAYALGKIGD----------ERAVEPLIKALK-DEDAWVRRAAADALGQIGD-------- 74 (201)
T ss_dssp HHHHHHHHHTTCSCHHHHHHHHHHHHHHCC----------GGGHHHHHHHTT-CSSHHHHHHHHHHHHHHCC--------
T ss_pred cchHHHHHHhcCCCHHHHHHHHHHHHhcCC----------hhHHHHHHHHHc-CCCHHHHHHHHHHHHhhCC--------
Confidence 568899999999999999999999987653 357999999997 7899999999999998742
Q ss_pred HhcCccHHHHHhhcCCCCHHHHHHHHHHHHHHhcChhHHHHHHhccHHHHHHHHhcCCCHHHHHHHHHHHHHhhccchhh
Q 006114 487 MSRGGGQLLAKTASKTDDPQTLRMVAGALANLCGNEKLHTMLEEDGAIKALLAMVRSGNIDVIAQVARGLANFAKCESRA 566 (660)
Q Consensus 487 ve~g~I~~Ll~LL~~s~d~~v~~~Aa~aLanLa~~~~~r~~iv~~G~V~~Lv~lL~s~~~~v~~~Al~aLanLA~~~~~~ 566 (660)
.++++.|+.+|.+ +++.++..|+++|+.+.. .++++.|+.++.++++.|+..|+.+|+.+..
T Consensus 75 --~~~~~~L~~~l~d-~~~~vr~~a~~aL~~~~~----------~~~~~~L~~~l~d~~~~vr~~a~~aL~~~~~----- 136 (201)
T 3ltj_A 75 --ERAVEPLIKALKD-EDGWVRQSAAVALGQIGD----------ERAVEPLIKALKDEDWFVRIAAAFALGEIGD----- 136 (201)
T ss_dssp --GGGHHHHHHHTTC-SSHHHHHHHHHHHHHHCC----------GGGHHHHHHHTTCSSHHHHHHHHHHHHHHTC-----
T ss_pred --HHHHHHHHHHHcC-CCHHHHHHHHHHHHHhCc----------HHHHHHHHHHHcCCCHHHHHHHHHHHHHhCC-----
Confidence 2578999999975 899999999999998753 3588999999999999999999999998863
Q ss_pred hhhcchhhhHHHhhcChHHHHHHhhcCCCHHHHHHHHHHHHHhhcCCccHHHHHhcCcHHHHHHHHhcCChHHHHHHHHH
Q 006114 567 IVQGQRKGRSHLMEDSALEWLIANSKTNSASTRRHVELALCHLAQNEDNARDFISRGGAKELVQISIESSREDIRNLAKK 646 (660)
Q Consensus 567 ~aq~~~e~r~~Li~~G~v~~Lv~lL~s~d~~vr~~Aa~AL~nLa~~~e~~~~Ive~G~l~~Lv~lL~s~s~~~ir~~A~~ 646 (660)
.++++.|+.++.+.++.||..|+++|+.+.. ..+++.|..++.+++ +.+|..|..
T Consensus 137 --------------~~~~~~L~~~l~d~~~~vr~~A~~aL~~~~~----------~~~~~~L~~~l~d~~-~~vr~~A~~ 191 (201)
T 3ltj_A 137 --------------ERAVEPLIKALKDEDGWVRQSAADALGEIGG----------ERVRAAMEKLAETGT-GFARKVAVN 191 (201)
T ss_dssp --------------GGGHHHHHHHTTCSSHHHHHHHHHHHHHHCS----------HHHHHHHHHHHHHCC-HHHHHHHHH
T ss_pred --------------HHHHHHHHHHHcCCCHHHHHHHHHHHHHhCc----------hhHHHHHHHHHhCCC-HHHHHHHHH
Confidence 3578899999999999999999999999842 347788888887654 568888888
Q ss_pred HHhcCcch
Q 006114 647 TMKSNPRL 654 (660)
Q Consensus 647 ~L~~~p~~ 654 (660)
+|....++
T Consensus 192 aL~~l~~~ 199 (201)
T 3ltj_A 192 YLETHKSL 199 (201)
T ss_dssp HHHHCC--
T ss_pred HHHHHHhh
Confidence 88765543
No 42
>1oyz_A Hypothetical protein YIBA; structural genomics, PSI, protein structure initiative, northeast structural genomics consortium, NESG; 2.10A {Escherichia coli} SCOP: a.118.1.16
Probab=99.36 E-value=5.2e-11 Score=121.57 Aligned_cols=198 Identities=11% Similarity=0.119 Sum_probs=149.6
Q ss_pred HHhCCCHHHHHHhhCCCCHHHHHHHHHHHHHhhCCchhHHHHHHcCCHHHHHHHHccCCCHHHHHHHHHHHHHhhcCchh
Q 006114 403 ICDEVGLPKILQLLTSEDPDVQIHAVKVVANLAAEDINQEKIVEEGGLDALLLLLRTSQNTTILRVASGAIANLAMNEMN 482 (660)
Q Consensus 403 I~e~ggI~~LV~LL~s~d~~vr~~Aa~aL~nLa~~~en~~~Ive~GgI~~Lv~LL~~s~d~~v~~~Aa~AL~nLA~~~~n 482 (660)
+...++++.|+..|.++++.+|..|+++|+.+.. .+.++.|+.+|. ++++.++..|+.+|+.+...+..
T Consensus 19 ~~~~~~i~~L~~~L~~~~~~vr~~A~~~L~~~~~----------~~~~~~L~~~l~-d~~~~vR~~A~~aL~~l~~~~~~ 87 (280)
T 1oyz_A 19 QCKKLNDDELFRLLDDHNSLKRISSARVLQLRGG----------QDAVRLAIEFCS-DKNYIRRDIGAFILGQIKICKKC 87 (280)
T ss_dssp HHHTSCHHHHHHHTTCSSHHHHHHHHHHHHHHCC----------HHHHHHHHHHHT-CSSHHHHHHHHHHHHHSCCCTTT
T ss_pred HHHHhhHHHHHHHHHcCCHHHHHHHHHHHHccCC----------chHHHHHHHHHc-CCCHHHHHHHHHHHHHhcccccc
Confidence 4566899999999999999999999999988762 346899999997 78999999999999998654332
Q ss_pred HHHHHhcCccHHHHHhhcCCCCHHHHHHHHHHHHHHh-cChhHHHHHHhccHHHHHHHHhcCCCHHHHHHHHHHHHHhhc
Q 006114 483 QGLIMSRGGGQLLAKTASKTDDPQTLRMVAGALANLC-GNEKLHTMLEEDGAIKALLAMVRSGNIDVIAQVARGLANFAK 561 (660)
Q Consensus 483 ~~~Ive~g~I~~Ll~LL~~s~d~~v~~~Aa~aLanLa-~~~~~r~~iv~~G~V~~Lv~lL~s~~~~v~~~Al~aLanLA~ 561 (660)
.. ..++.|...+...+++.++..|+++|++++ .++.. ...+++.|+.++.++++.++..|+.+|+++..
T Consensus 88 ~~-----~l~~~L~~~~~~d~~~~vr~~a~~aL~~l~~~~~~~-----~~~~~~~L~~~l~d~~~~vR~~a~~aL~~~~~ 157 (280)
T 1oyz_A 88 ED-----NVFNILNNMALNDKSACVRATAIESTAQRCKKNPIY-----SPKIVEQSQITAFDKSTNVRRATAFAISVIND 157 (280)
T ss_dssp HH-----HHHHHHHHHHHHCSCHHHHHHHHHHHHHHHHHCGGG-----HHHHHHHHHHHTTCSCHHHHHHHHHHHHTC--
T ss_pred ch-----HHHHHHHHHHhcCCCHHHHHHHHHHHHHHhccCCcc-----cHHHHHHHHHHhhCCCHHHHHHHHHHHHhcCC
Confidence 11 123444432224578999999999999987 33222 23578899999999999999999999988762
Q ss_pred cchhhhhhcchhhhHHHhhcChHHHHHHhhcCCCHHHHHHHHHHHHHhhcCCccHHHHHhcCcHHHHHHHHhcCChHHHH
Q 006114 562 CESRAIVQGQRKGRSHLMEDSALEWLIANSKTNSASTRRHVELALCHLAQNEDNARDFISRGGAKELVQISIESSREDIR 641 (660)
Q Consensus 562 ~~~~~~aq~~~e~r~~Li~~G~v~~Lv~lL~s~d~~vr~~Aa~AL~nLa~~~e~~~~Ive~G~l~~Lv~lL~s~s~~~ir 641 (660)
.++++.|+.++.++++.||..|+++|+.++.+.. .+++.|+.++.+++ ..+|
T Consensus 158 -------------------~~~~~~L~~~l~d~~~~vr~~a~~aL~~~~~~~~--------~~~~~L~~~l~d~~-~~vR 209 (280)
T 1oyz_A 158 -------------------KATIPLLINLLKDPNGDVRNWAAFAININKYDNS--------DIRDCFVEMLQDKN-EEVR 209 (280)
T ss_dssp --------------------CCHHHHHHHHTCSSHHHHHHHHHHHHHHTCCCH--------HHHHHHHHHTTCSC-HHHH
T ss_pred -------------------HHHHHHHHHHHcCCCHHHHHHHHHHHHhhccCcH--------HHHHHHHHHhcCCC-HHHH
Confidence 2478999999999999999999999999864322 35566777766543 4455
Q ss_pred HHHHHHHh
Q 006114 642 NLAKKTMK 649 (660)
Q Consensus 642 ~~A~~~L~ 649 (660)
..|..+|.
T Consensus 210 ~~A~~aL~ 217 (280)
T 1oyz_A 210 IEAIIGLS 217 (280)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHH
Confidence 55555553
No 43
>3ltm_A Alpha-REP4; protein engineering, heat-like repeat, protein binding; HET: 1PE 12P; 2.15A {Synthetic}
Probab=99.35 E-value=1.9e-11 Score=119.58 Aligned_cols=190 Identities=15% Similarity=0.133 Sum_probs=155.2
Q ss_pred ccchhhhhhcccCCCccccccchhhhhhcCchhHHHHHhCCCHHHHHHhhCCCCHHHHHHHHHHHHHhhCCchhHHHHHH
Q 006114 367 TKDYISKGSSRFGAPMSLQKSNPSRELSGQRATIAKICDEVGLPKILQLLTSEDPDVQIHAVKVVANLAAEDINQEKIVE 446 (660)
Q Consensus 367 ~~g~i~~l~~~L~~~~~~vr~~~~~~laa~~~~~~~I~e~ggI~~LV~LL~s~d~~vr~~Aa~aL~nLa~~~en~~~Ive 446 (660)
+.+.++.++..+.+..+.+|..+...++. +....+++.|+.+|.++++.+|..|+.+|+.+..
T Consensus 17 ~~~~~~~L~~~L~~~~~~vR~~A~~~L~~-------~~~~~~~~~L~~~l~~~~~~vr~~a~~aL~~~~~---------- 79 (211)
T 3ltm_A 17 DPEKVEMYIKNLQDDSYYVRRAAAYALGK-------IGDERAVEPLIKALKDEDAWVRRAAADALGQIGD---------- 79 (211)
T ss_dssp CGGGHHHHHHHTTCSSHHHHHHHHHHHHH-------HCCGGGHHHHHHHTTCSCHHHHHHHHHHHHHHCC----------
T ss_pred CHhHHHHHHHHHcCCCHHHHHHHHHHHHH-------hCCccHHHHHHHHHcCCCHHHHHHHHHHHHhhCC----------
Confidence 45678888999998888888776666443 1224789999999999999999999999987753
Q ss_pred cCCHHHHHHHHccCCCHHHHHHHHHHHHHhhcCchhHHHHHhcCccHHHHHhhcCCCCHHHHHHHHHHHHHHhcChhHHH
Q 006114 447 EGGLDALLLLLRTSQNTTILRVASGAIANLAMNEMNQGLIMSRGGGQLLAKTASKTDDPQTLRMVAGALANLCGNEKLHT 526 (660)
Q Consensus 447 ~GgI~~Lv~LL~~s~d~~v~~~Aa~AL~nLA~~~~n~~~Ive~g~I~~Ll~LL~~s~d~~v~~~Aa~aLanLa~~~~~r~ 526 (660)
.++++.|+.+|. ++++.++..|+.+|+.+.. .+.++.|+.++.+ +++.++..|+.+|+.+..
T Consensus 80 ~~~~~~L~~~l~-~~~~~vr~~a~~aL~~~~~----------~~~~~~L~~~l~d-~~~~vr~~a~~aL~~~~~------ 141 (211)
T 3ltm_A 80 ERAVEPLIKALK-DEDGWVRQSAAVALGQIGD----------ERAVEPLIKALKD-EDWFVRIAAAFALGEIGD------ 141 (211)
T ss_dssp GGGHHHHHHHTT-CSSHHHHHHHHHHHHHHCC----------GGGHHHHHHHTTC-SSHHHHHHHHHHHHHHCC------
T ss_pred HHHHHHHHHHHc-CCCHHHHHHHHHHHHHhCc----------HHHHHHHHHHHhC-CCHHHHHHHHHHHHHcCC------
Confidence 457999999997 7899999999999998843 3478999999964 899999999999998853
Q ss_pred HHHhccHHHHHHHHhcCCCHHHHHHHHHHHHHhhccchhhhhhcchhhhHHHhhcChHHHHHHhhcCCCHHHHHHHHHHH
Q 006114 527 MLEEDGAIKALLAMVRSGNIDVIAQVARGLANFAKCESRAIVQGQRKGRSHLMEDSALEWLIANSKTNSASTRRHVELAL 606 (660)
Q Consensus 527 ~iv~~G~V~~Lv~lL~s~~~~v~~~Al~aLanLA~~~~~~~aq~~~e~r~~Li~~G~v~~Lv~lL~s~d~~vr~~Aa~AL 606 (660)
..+++.|+.++.++++.|+..|+.+|+.+.. ..+++.|..++.+.++.||..|..+|
T Consensus 142 ----~~~~~~L~~~l~d~~~~vr~~a~~aL~~~~~-------------------~~~~~~L~~~l~d~~~~vr~~A~~aL 198 (211)
T 3ltm_A 142 ----ERAVEPLIKALKDEDGWVRQSAADALGEIGG-------------------ERVRAAMEKLAETGTGFARKVAVNYL 198 (211)
T ss_dssp ----GGGHHHHHHHTTCSSHHHHHHHHHHHHHHCS-------------------HHHHHHHHHHHHHCCHHHHHHHHHHH
T ss_pred ----HHHHHHHHHHHcCCCHHHHHHHHHHHHHhCc-------------------hhHHHHHHHHHhCCCHHHHHHHHHHH
Confidence 3578999999999999999999999999863 24678899999999999999999999
Q ss_pred HHhhcCCc
Q 006114 607 CHLAQNED 614 (660)
Q Consensus 607 ~nLa~~~e 614 (660)
..+..+..
T Consensus 199 ~~~~~~~~ 206 (211)
T 3ltm_A 199 ETHKSFNH 206 (211)
T ss_dssp HC------
T ss_pred HhcCCCCC
Confidence 99977553
No 44
>3ltj_A Alpharep-4; protein engineering, heat-like repeat, protein binding; 1.80A {Synthetic}
Probab=99.34 E-value=2.7e-11 Score=117.57 Aligned_cols=189 Identities=15% Similarity=0.132 Sum_probs=159.0
Q ss_pred CCcccchhhhhhcccCCCccccccchhhhhhcCchhHHHHHhCCCHHHHHHhhCCCCHHHHHHHHHHHHHhhCCchhHHH
Q 006114 364 KPYTKDYISKGSSRFGAPMSLQKSNPSRELSGQRATIAKICDEVGLPKILQLLTSEDPDVQIHAVKVVANLAAEDINQEK 443 (660)
Q Consensus 364 ~~~~~g~i~~l~~~L~~~~~~vr~~~~~~laa~~~~~~~I~e~ggI~~LV~LL~s~d~~vr~~Aa~aL~nLa~~~en~~~ 443 (660)
++...+..+.++..+.+..+.+|..+...++. +....+++.|+.+|.++++.+|..|+.+|+.+..
T Consensus 9 ~~~~~~~~~~~i~~L~~~~~~vr~~A~~~L~~-------~~~~~~~~~L~~~l~~~~~~vr~~a~~~L~~~~~------- 74 (201)
T 3ltj_A 9 HHTDPEKVEMYIKNLQDDSYYVRRAAAYALGK-------IGDERAVEPLIKALKDEDAWVRRAAADALGQIGD------- 74 (201)
T ss_dssp CCCCHHHHHHHHHHTTCSCHHHHHHHHHHHHH-------HCCGGGHHHHHHHTTCSSHHHHHHHHHHHHHHCC-------
T ss_pred cccCCcchHHHHHHhcCCCHHHHHHHHHHHHh-------cCChhHHHHHHHHHcCCCHHHHHHHHHHHHhhCC-------
Confidence 34677888899999999999998877777443 1123679999999999999999999999987643
Q ss_pred HHHcCCHHHHHHHHccCCCHHHHHHHHHHHHHhhcCchhHHHHHhcCccHHHHHhhcCCCCHHHHHHHHHHHHHHhcChh
Q 006114 444 IVEEGGLDALLLLLRTSQNTTILRVASGAIANLAMNEMNQGLIMSRGGGQLLAKTASKTDDPQTLRMVAGALANLCGNEK 523 (660)
Q Consensus 444 Ive~GgI~~Lv~LL~~s~d~~v~~~Aa~AL~nLA~~~~n~~~Ive~g~I~~Ll~LL~~s~d~~v~~~Aa~aLanLa~~~~ 523 (660)
.++++.|+.+|. ++++.++..|+.+|+.+.. .++++.|+.++.+ +++.++..|+++|+.+..
T Consensus 75 ---~~~~~~L~~~l~-d~~~~vr~~a~~aL~~~~~----------~~~~~~L~~~l~d-~~~~vr~~a~~aL~~~~~--- 136 (201)
T 3ltj_A 75 ---ERAVEPLIKALK-DEDGWVRQSAAVALGQIGD----------ERAVEPLIKALKD-EDWFVRIAAAFALGEIGD--- 136 (201)
T ss_dssp ---GGGHHHHHHHTT-CSSHHHHHHHHHHHHHHCC----------GGGHHHHHHHTTC-SSHHHHHHHHHHHHHHTC---
T ss_pred ---HHHHHHHHHHHc-CCCHHHHHHHHHHHHHhCc----------HHHHHHHHHHHcC-CCHHHHHHHHHHHHHhCC---
Confidence 357999999997 7899999999999998743 2478899999964 799999999999998853
Q ss_pred HHHHHHhccHHHHHHHHhcCCCHHHHHHHHHHHHHhhccchhhhhhcchhhhHHHhhcChHHHHHHhhcCCCHHHHHHHH
Q 006114 524 LHTMLEEDGAIKALLAMVRSGNIDVIAQVARGLANFAKCESRAIVQGQRKGRSHLMEDSALEWLIANSKTNSASTRRHVE 603 (660)
Q Consensus 524 ~r~~iv~~G~V~~Lv~lL~s~~~~v~~~Al~aLanLA~~~~~~~aq~~~e~r~~Li~~G~v~~Lv~lL~s~d~~vr~~Aa 603 (660)
.++++.|+.++.++++.++..|+.+|+.+.. ..+++.|..++.+.++.||..|.
T Consensus 137 -------~~~~~~L~~~l~d~~~~vr~~A~~aL~~~~~-------------------~~~~~~L~~~l~d~~~~vr~~A~ 190 (201)
T 3ltj_A 137 -------ERAVEPLIKALKDEDGWVRQSAADALGEIGG-------------------ERVRAAMEKLAETGTGFARKVAV 190 (201)
T ss_dssp -------GGGHHHHHHHTTCSSHHHHHHHHHHHHHHCS-------------------HHHHHHHHHHHHHCCHHHHHHHH
T ss_pred -------HHHHHHHHHHHcCCCHHHHHHHHHHHHHhCc-------------------hhHHHHHHHHHhCCCHHHHHHHH
Confidence 4688999999999999999999999999852 23788899999999999999999
Q ss_pred HHHHHhh
Q 006114 604 LALCHLA 610 (660)
Q Consensus 604 ~AL~nLa 610 (660)
.+|..+.
T Consensus 191 ~aL~~l~ 197 (201)
T 3ltj_A 191 NYLETHK 197 (201)
T ss_dssp HHHHHCC
T ss_pred HHHHHHH
Confidence 9999875
No 45
>3grl_A General vesicular transport factor P115; vesicle transport, membrane trafficking, membrane tethering, fusion, snare, RAB GTPase, armadillo repeats; 2.00A {Bos taurus} PDB: 3gq2_A 2w3c_A
Probab=99.32 E-value=3.6e-11 Score=136.23 Aligned_cols=241 Identities=14% Similarity=0.086 Sum_probs=189.8
Q ss_pred hCCCHHHHHHhhCCCCHHHHHHHHHHHHHhhC-Cch-hHHHHHH-cCCHHHHHHHHccCCCHHHHHHHHHHHHHhhcC-c
Q 006114 405 DEVGLPKILQLLTSEDPDVQIHAVKVVANLAA-EDI-NQEKIVE-EGGLDALLLLLRTSQNTTILRVASGAIANLAMN-E 480 (660)
Q Consensus 405 e~ggI~~LV~LL~s~d~~vr~~Aa~aL~nLa~-~~e-n~~~Ive-~GgI~~Lv~LL~~s~d~~v~~~Aa~AL~nLA~~-~ 480 (660)
..++|+.|+.+|.+++-.+|..++..|..|+. .+. ++..|.. .+||+.|+.+|. ++...+|-.|..+|.+|+.+ +
T Consensus 120 ~~~~i~~Ll~lL~~~df~vR~~alqlL~~L~~~r~~~~Q~~Il~~p~gi~~Lv~lL~-d~rE~iRneallLL~~Lt~~n~ 198 (651)
T 3grl_A 120 QQENVTLLLSLLEEFDFHVRWPGVKLLTSLLKQLGPQVQQIILVSPMGVSRLMDLLA-DSREVIRNDGVLLLQALTRSNG 198 (651)
T ss_dssp STHHHHHHHHHTTCCCHHHHHHHHHHHHHHHHHSHHHHHHHHHHSTTHHHHHHGGGG-CSSHHHHHHHHHHHHHHHTTCH
T ss_pred CCccHHHHHHHhcCccHHHHHHHHHHHHHHHhcCcHHHHHHHHhCcccHHHHHHHHh-CchHHHHHHHHHHHHHHhcCCH
Confidence 56789999999999999999999999999998 555 7888885 599999999998 66788999999999999987 7
Q ss_pred hhHHHHHhcCccHHHHHhhcCCC---CHHHHHHHHHHHHHHh-cChhHHHHHHhccHHHHHHHHhcCCC------HHHHH
Q 006114 481 MNQGLIMSRGGGQLLAKTASKTD---DPQTLRMVAGALANLC-GNEKLHTMLEEDGAIKALLAMVRSGN------IDVIA 550 (660)
Q Consensus 481 ~n~~~Ive~g~I~~Ll~LL~~s~---d~~v~~~Aa~aLanLa-~~~~~r~~iv~~G~V~~Lv~lL~s~~------~~v~~ 550 (660)
+.++.+.-.|+++.|+.++..-+ ...+...++.+|.||. .++.++..+.+.|+++.|..++..++ +....
T Consensus 199 ~iQklVAFEnaFe~Lf~Ii~~Eg~~~Ggivv~DCL~ll~nLLr~N~sNQ~~FrEt~~i~~L~~LL~~~~~~~~W~~Qk~~ 278 (651)
T 3grl_A 199 AIQKIVAFENAFERLLDIITEEGNSDGGIVVEDCLILLQNLLKNNNSNQNFFKEGSYIQRMKPWFEVGDENSGWSAQKVT 278 (651)
T ss_dssp HHHHHHHHTTHHHHHHHHHHHHTGGGSHHHHHHHHHHHHHHHTTCHHHHHHHHHTTCGGGGGGGGCCCSCSSCCCHHHHH
T ss_pred HHHHHHHHhccHHHHHHHHHhcCCCccchhHHHHHHHHHHHHhcCHHHHHHHHHcCCHHHHHHHhCCCccccccHHHHHH
Confidence 77888888999999999997522 2356778889999998 78889999999999999999997543 22334
Q ss_pred H---HHHHHHHhhccchhhhhhcchhhhHHHhhcChHHHHHHhhcCC--CHHHHHHHHHHHHHhhcCC-ccHHHHHhcC-
Q 006114 551 Q---VARGLANFAKCESRAIVQGQRKGRSHLMEDSALEWLIANSKTN--SASTRRHVELALCHLAQNE-DNARDFISRG- 623 (660)
Q Consensus 551 ~---Al~aLanLA~~~~~~~aq~~~e~r~~Li~~G~v~~Lv~lL~s~--d~~vr~~Aa~AL~nLa~~~-e~~~~Ive~G- 623 (660)
+ ++.++.-|+..+.. .++.+.++..+...|+++.|++++.+. ...++..|..+++.+..++ .+...+....
T Consensus 279 N~~~~L~iIrlLv~~~~~--~~~t~~nQ~~~~~~g~l~~Ll~ll~~~~~p~~i~~~Al~tla~~irgN~~~Q~~fa~~~v 356 (651)
T 3grl_A 279 NLHLMLQLVRVLVSPNNP--PGATSSCQKAMFQCGLLQQLCTILMATGVPADILTETINTVSEVIRGCQVNQDYFASVNA 356 (651)
T ss_dssp HHHHHHHHHHHHTCTTSC--HHHHHHHHHHHHHTTHHHHHHHHHTCSSCCHHHHHHHHHHHHHHHTTCHHHHHHHHHCEE
T ss_pred HHHHHHHHHHHHhCCCCC--CCCCHHHHHHHHHCCCHHHHHHHHccCCCCHHHHHHHHHHHHHHHhCCHHHHHHHhhccC
Confidence 4 56666666654321 112456788999999999999998765 6789999999999998766 5566666533
Q ss_pred --------cHHHHHHHHhcCChHHHHHHHHHHH
Q 006114 624 --------GAKELVQISIESSREDIRNLAKKTM 648 (660)
Q Consensus 624 --------~l~~Lv~lL~s~s~~~ir~~A~~~L 648 (660)
++..|+.++.+....++|-+|...+
T Consensus 357 p~~~~~p~li~lL~~~~~~~~~~~lR~Aa~~cl 389 (651)
T 3grl_A 357 PSNPPRPAIVVLLMSMVNERQPFVLRCAVLYCF 389 (651)
T ss_dssp SSSSCEEHHHHHHHHHTCTTSCHHHHHHHHHHH
T ss_pred CCCCCcChHHHHHHHHhcccccHHHHHHHHHHH
Confidence 3344555566667778888887544
No 46
>3grl_A General vesicular transport factor P115; vesicle transport, membrane trafficking, membrane tethering, fusion, snare, RAB GTPase, armadillo repeats; 2.00A {Bos taurus} PDB: 3gq2_A 2w3c_A
Probab=99.32 E-value=2.7e-11 Score=137.26 Aligned_cols=246 Identities=14% Similarity=0.123 Sum_probs=188.7
Q ss_pred HHHhCCCHHHHHHhhCC--CCHHHHHHHHHHHHHhhC-Cch-----------------hHHHH-HHcCCHHHHHHHHccC
Q 006114 402 KICDEVGLPKILQLLTS--EDPDVQIHAVKVVANLAA-EDI-----------------NQEKI-VEEGGLDALLLLLRTS 460 (660)
Q Consensus 402 ~I~e~ggI~~LV~LL~s--~d~~vr~~Aa~aL~nLa~-~~e-----------------n~~~I-ve~GgI~~Lv~LL~~s 460 (660)
.-++.+|++.|+..|+. .|.++-..++.+|.++.. ++. +...+ .+.++|+.|+.+|. +
T Consensus 55 ~~Vg~~~l~~li~~L~~d~~D~e~v~~~LetL~~l~~~~~~~~~~~~~~~~~~~~~~~~~d~f~~~~~~i~~Ll~lL~-~ 133 (651)
T 3grl_A 55 LEVGIQAMEHLIHVLQTDRSDSEIIGYALDTLYNIISNDEEEEVEENSTRQSEDLGSQFTEIFIKQQENVTLLLSLLE-E 133 (651)
T ss_dssp THHHHHTHHHHHHHHHSCTTCHHHHHHHHHHHHHHHCCC--------------CHHHHHHHHHHHSTHHHHHHHHHTT-C
T ss_pred HHhhhhhHHHHHHHHhcccccHHHHHHHHHHHHHHhCCCCcccccccccccchHHHHHHHHHHHcCCccHHHHHHHhc-C
Confidence 34667899999999974 578888889999988765 221 22233 35678999999997 7
Q ss_pred CCHHHHHHHHHHHHHhhcC-ch-hHHHHHh-cCccHHHHHhhcCCCCHHHHHHHHHHHHHHh-cChhHHHHHHhccHHHH
Q 006114 461 QNTTILRVASGAIANLAMN-EM-NQGLIMS-RGGGQLLAKTASKTDDPQTLRMVAGALANLC-GNEKLHTMLEEDGAIKA 536 (660)
Q Consensus 461 ~d~~v~~~Aa~AL~nLA~~-~~-n~~~Ive-~g~I~~Ll~LL~~s~d~~v~~~Aa~aLanLa-~~~~~r~~iv~~G~V~~ 536 (660)
.|..++.++..+|..|+.+ +. +++.|.. .+||+.|+.+|.+ ....++-.|+..|.+|+ .+++.+..+.-.|+++.
T Consensus 134 ~df~vR~~alqlL~~L~~~r~~~~Q~~Il~~p~gi~~Lv~lL~d-~rE~iRneallLL~~Lt~~n~~iQklVAFEnaFe~ 212 (651)
T 3grl_A 134 FDFHVRWPGVKLLTSLLKQLGPQVQQIILVSPMGVSRLMDLLAD-SREVIRNDGVLLLQALTRSNGAIQKIVAFENAFER 212 (651)
T ss_dssp CCHHHHHHHHHHHHHHHHHSHHHHHHHHHHSTTHHHHHHGGGGC-SSHHHHHHHHHHHHHHHTTCHHHHHHHHHTTHHHH
T ss_pred ccHHHHHHHHHHHHHHHhcCcHHHHHHHHhCcccHHHHHHHHhC-chHHHHHHHHHHHHHHhcCCHHHHHHHHHhccHHH
Confidence 8999999999999999876 44 8999995 6999999999976 56678888999999999 66777777777799999
Q ss_pred HHHHhcCC----CHHHHHHHHHHHHHhhccchhhhhhcchhhhHHHhhcChHHHHHHhhcCCC------HHHHHH---HH
Q 006114 537 LLAMVRSG----NIDVIAQVARGLANFAKCESRAIVQGQRKGRSHLMEDSALEWLIANSKTNS------ASTRRH---VE 603 (660)
Q Consensus 537 Lv~lL~s~----~~~v~~~Al~aLanLA~~~~~~~aq~~~e~r~~Li~~G~v~~Lv~lL~s~d------~~vr~~---Aa 603 (660)
|+.++... ...+..-|+.+|.||..+++ .++..+.+.|+++.|..++..+. ++...+ +.
T Consensus 213 Lf~Ii~~Eg~~~Ggivv~DCL~ll~nLLr~N~--------sNQ~~FrEt~~i~~L~~LL~~~~~~~~W~~Qk~~N~~~~L 284 (651)
T 3grl_A 213 LLDIITEEGNSDGGIVVEDCLILLQNLLKNNN--------SNQNFFKEGSYIQRMKPWFEVGDENSGWSAQKVTNLHLML 284 (651)
T ss_dssp HHHHHHHHTGGGSHHHHHHHHHHHHHHHTTCH--------HHHHHHHHTTCGGGGGGGGCCCSCSSCCCHHHHHHHHHHH
T ss_pred HHHHHHhcCCCccchhHHHHHHHHHHHHhcCH--------HHHHHHHHcCCHHHHHHHhCCCccccccHHHHHHHHHHHH
Confidence 99999853 34788999999999998763 46788999999999999987542 333344 44
Q ss_pred HHHHHhhcCC-------ccHHHHHhcCcHHHHHHHHhcCC-hHHHHHHHHHHH----hcCcchhhh
Q 006114 604 LALCHLAQNE-------DNARDFISRGGAKELVQISIESS-REDIRNLAKKTM----KSNPRLQAD 657 (660)
Q Consensus 604 ~AL~nLa~~~-------e~~~~Ive~G~l~~Lv~lL~s~s-~~~ir~~A~~~L----~~~p~~~~e 657 (660)
.++.-|+... .+...+.+.|+++.|++++.+.. +..++..|..++ .+||..++.
T Consensus 285 ~iIrlLv~~~~~~~~t~~nQ~~~~~~g~l~~Ll~ll~~~~~p~~i~~~Al~tla~~irgN~~~Q~~ 350 (651)
T 3grl_A 285 QLVRVLVSPNNPPGATSSCQKAMFQCGLLQQLCTILMATGVPADILTETINTVSEVIRGCQVNQDY 350 (651)
T ss_dssp HHHHHHTCTTSCHHHHHHHHHHHHHTTHHHHHHHHHTCSSCCHHHHHHHHHHHHHHHTTCHHHHHH
T ss_pred HHHHHHhCCCCCCCCCHHHHHHHHHCCCHHHHHHHHccCCCCHHHHHHHHHHHHHHHhCCHHHHHH
Confidence 4444555431 45778899999999999998763 455776666444 566655543
No 47
>4gmo_A Putative uncharacterized protein; ARM, heat, solenoid, nuclear transport, chaperone, RPL5, RPL KAP104, nucleus; 2.10A {Chaetomium thermophilum var} PDB: 4gmn_A
Probab=99.21 E-value=8.6e-11 Score=136.37 Aligned_cols=218 Identities=12% Similarity=0.037 Sum_probs=164.0
Q ss_pred CCHHHHHHhhCCCCHHHHHHHHHHHHHhhCCchhHHHHHHcCCHHHHHHHHccCCCHHHHHHHHHHHHHhhcC--chhHH
Q 006114 407 VGLPKILQLLTSEDPDVQIHAVKVVANLAAEDINQEKIVEEGGLDALLLLLRTSQNTTILRVASGAIANLAMN--EMNQG 484 (660)
Q Consensus 407 ggI~~LV~LL~s~d~~vr~~Aa~aL~nLa~~~en~~~Ive~GgI~~Lv~LL~~s~d~~v~~~Aa~AL~nLA~~--~~n~~ 484 (660)
..+.+++..|+|+++..|..||++|++|+.++..+..+...|+|.+++.-+-.+++.+|+..|+++|+||+.+ ++.+.
T Consensus 34 ~~i~Pll~~L~S~~~~~r~~A~~al~~l~~~~~~~~l~~~~~~v~~ll~~lL~D~~~~Vr~~A~gaLrnL~~~~g~d~~~ 113 (684)
T 4gmo_A 34 DKILPVLKDLKSPDAKSRTTAAGAIANIVQDAKCRKLLLREQVVHIVLTETLTDNNIDSRAAGWEILKVLAQEEEADFCV 113 (684)
T ss_dssp HTTHHHHHHHSSSCCSHHHHHHHHHHHHTTSHHHHHHHHHTTHHHHHHHTTTTCSCHHHHHHHHHHHHHHHHHSCHHHHH
T ss_pred hhHHHHHHHcCCCCHHHHHHHHHHHHHHHcCcHHHHHHHHcCCHHHHHHHHcCCCCHHHHHHHHHHHHHHHhhcCchHHH
Confidence 3566688889999999999999999999999999999999999988766433488999999999999999854 78899
Q ss_pred HHHhcCccHHHHHhhcCC-------------CC-------HHHHHHHHHHHHHHh-cChhHHHHHHhccHHHHHHHHhcC
Q 006114 485 LIMSRGGGQLLAKTASKT-------------DD-------PQTLRMVAGALANLC-GNEKLHTMLEEDGAIKALLAMVRS 543 (660)
Q Consensus 485 ~Ive~g~I~~Ll~LL~~s-------------~d-------~~v~~~Aa~aLanLa-~~~~~r~~iv~~G~V~~Lv~lL~s 543 (660)
.++..|++++|..++... .. +.+...++++|++|| .+++....+...|+++.|+..+.+
T Consensus 114 ~l~~~~il~~L~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~lL~~L~e~s~~~~~~v~~~~~l~~l~~~L~~ 193 (684)
T 4gmo_A 114 HLYRLDVLTAIEHAAKAVLETLTTSEPPFSKLLKAQQRLVWDITGSLLVLIGLLALARDEIHEAVATKQTILRLLFRLIS 193 (684)
T ss_dssp HHHHTTHHHHHHHHHHHHHHHHHCBTTBGGGSCHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHTCHHHHHHHHHHHH
T ss_pred HHHHcChHHHHHHHHHhhHHHHhhhccccccccHHHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHhcccHHHHHHHHHh
Confidence 999999999999987531 00 134456778999998 667777788899999999998853
Q ss_pred ---CCHHHHHHHHHHHHHhhccchhhhhhcchhhhHHHhhcChH---HHHHHhhcCCCHHHHHHHHHHHHHhhc------
Q 006114 544 ---GNIDVIAQVARGLANFAKCESRAIVQGQRKGRSHLMEDSAL---EWLIANSKTNSASTRRHVELALCHLAQ------ 611 (660)
Q Consensus 544 ---~~~~v~~~Al~aLanLA~~~~~~~aq~~~e~r~~Li~~G~v---~~Lv~lL~s~d~~vr~~Aa~AL~nLa~------ 611 (660)
...++...|+.+|.+|+..++. ....+.+.|.. ..+..+.. .+...+..+++.|.|+..
T Consensus 194 ~~~~~~~v~~~a~~~L~~ls~dn~~--------~~~~i~~~~~~~~~~~ll~~~~-~~~~~~~la~giL~Ni~~~~~~~d 264 (684)
T 4gmo_A 194 ADIAPQDIYEEAISCLTTLSEDNLK--------VGQAITDDQETHVYDVLLKLAT-GTDPRAVMACGVLHNVFTSLQWMD 264 (684)
T ss_dssp HCCSCHHHHHHHHHHHHHHHTTCHH--------HHHHHHTCCSSCHHHHHHHHHH-SSCTTHHHHHHHHHHHHHHHTCBT
T ss_pred cCCCcHHHHHHHHHHHHHHhccCHH--------HHHHHHhcchHHHHHHHHHHhc-CCcHHHHHHHHHHHhHhhhhhhhh
Confidence 3578999999999999987643 23345555532 33333333 444567788999999842
Q ss_pred CCccHHHHHhcCcHHHHHHHHh
Q 006114 612 NEDNARDFISRGGAKELVQISI 633 (660)
Q Consensus 612 ~~e~~~~Ive~G~l~~Lv~lL~ 633 (660)
.......++....++.+...+.
T Consensus 265 ~s~~~~~~~~~~li~~l~~~l~ 286 (684)
T 4gmo_A 265 HSPGKDGACDAILIPTLTRALE 286 (684)
T ss_dssp TBCCGGGCSGGGTHHHHHHHHT
T ss_pred cchhhHHHHHHHHHHhhhhhHh
Confidence 1233344455556666666654
No 48
>4gmo_A Putative uncharacterized protein; ARM, heat, solenoid, nuclear transport, chaperone, RPL5, RPL KAP104, nucleus; 2.10A {Chaetomium thermophilum var} PDB: 4gmn_A
Probab=98.97 E-value=2.2e-09 Score=124.51 Aligned_cols=167 Identities=12% Similarity=0.096 Sum_probs=134.6
Q ss_pred CCHHHHHHHHccCCCHHHHHHHHHHHHHhhcCchhHHHHHhcCccHHHHH-hhcCCCCHHHHHHHHHHHHHHh--cChhH
Q 006114 448 GGLDALLLLLRTSQNTTILRVASGAIANLAMNEMNQGLIMSRGGGQLLAK-TASKTDDPQTLRMVAGALANLC--GNEKL 524 (660)
Q Consensus 448 GgI~~Lv~LL~~s~d~~v~~~Aa~AL~nLA~~~~n~~~Ive~g~I~~Ll~-LL~~s~d~~v~~~Aa~aLanLa--~~~~~ 524 (660)
+.|.+++..|. ++++..|..||++|++|+.++.++..+...|+|+.++. +|.+ +++.|+..|+|+|+||| ..++.
T Consensus 34 ~~i~Pll~~L~-S~~~~~r~~A~~al~~l~~~~~~~~l~~~~~~v~~ll~~lL~D-~~~~Vr~~A~gaLrnL~~~~g~d~ 111 (684)
T 4gmo_A 34 DKILPVLKDLK-SPDAKSRTTAAGAIANIVQDAKCRKLLLREQVVHIVLTETLTD-NNIDSRAAGWEILKVLAQEEEADF 111 (684)
T ss_dssp HTTHHHHHHHS-SSCCSHHHHHHHHHHHHTTSHHHHHHHHHTTHHHHHHHTTTTC-SCHHHHHHHHHHHHHHHHHSCHHH
T ss_pred hhHHHHHHHcC-CCCHHHHHHHHHHHHHHHcCcHHHHHHHHcCCHHHHHHHHcCC-CCHHHHHHHHHHHHHHHhhcCchH
Confidence 35677888897 78999999999999999999999999999999987655 5654 78999999999999998 56899
Q ss_pred HHHHHhccHHHHHHHHhcCCC---------------------HHHHHHHHHHHHHhhccchhhhhhcchhhhHHHhhcCh
Q 006114 525 HTMLEEDGAIKALLAMVRSGN---------------------IDVIAQVARGLANFAKCESRAIVQGQRKGRSHLMEDSA 583 (660)
Q Consensus 525 r~~iv~~G~V~~Lv~lL~s~~---------------------~~v~~~Al~aLanLA~~~~~~~aq~~~e~r~~Li~~G~ 583 (660)
+..+++.|++++|..++.... .++..+++.+|++||..++ .....+...|+
T Consensus 112 ~~~l~~~~il~~L~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~lL~~L~e~s~--------~~~~~v~~~~~ 183 (684)
T 4gmo_A 112 CVHLYRLDVLTAIEHAAKAVLETLTTSEPPFSKLLKAQQRLVWDITGSLLVLIGLLALARD--------EIHEAVATKQT 183 (684)
T ss_dssp HHHHHHTTHHHHHHHHHHHHHHHHHCBTTBGGGSCHHHHHHHHHHHHHHHHHHHHHHHHCH--------HHHHHHHTCHH
T ss_pred HHHHHHcChHHHHHHHHHhhHHHHhhhccccccccHHHHHHHHHHHHHHHHHHHHHHhCCH--------HHHHHHHhccc
Confidence 999999999999999875211 2355678888999886543 34455777899
Q ss_pred HHHHHHhhcCC---CHHHHHHHHHHHHHhhcCC-ccHHHHHhcCc
Q 006114 584 LEWLIANSKTN---SASTRRHVELALCHLAQNE-DNARDFISRGG 624 (660)
Q Consensus 584 v~~Lv~lL~s~---d~~vr~~Aa~AL~nLa~~~-e~~~~Ive~G~ 624 (660)
++.|+.++.+. ...++..|+.+|+.++.++ .....+...|.
T Consensus 184 l~~l~~~L~~~~~~~~~v~~~a~~~L~~ls~dn~~~~~~i~~~~~ 228 (684)
T 4gmo_A 184 ILRLLFRLISADIAPQDIYEEAISCLTTLSEDNLKVGQAITDDQE 228 (684)
T ss_dssp HHHHHHHHHHHCCSCHHHHHHHHHHHHHHHTTCHHHHHHHHTCCS
T ss_pred HHHHHHHHHhcCCCcHHHHHHHHHHHHHHhccCHHHHHHHHhcch
Confidence 99999887543 4679999999999999877 45566666554
No 49
>2vgl_B AP-2 complex subunit beta-1; cytoplasmic vesicle, alternative splicing, endocytosis, lipid-binding, golgi apparatus, adaptor, membrane, transport; HET: IHP; 2.59A {Homo sapiens} SCOP: i.23.1.1 PDB: 2jkt_B 2jkr_B* 2xa7_B 1w63_B
Probab=98.90 E-value=5e-08 Score=111.00 Aligned_cols=270 Identities=15% Similarity=0.137 Sum_probs=173.6
Q ss_pred hhhhhcccCCCccccccchhhhhhc-CchhHHHHHhCCCHHHHHHhhCCCCHHHHHHHHHHHHHhhC-CchhHHHHHHcC
Q 006114 371 ISKGSSRFGAPMSLQKSNPSRELSG-QRATIAKICDEVGLPKILQLLTSEDPDVQIHAVKVVANLAA-EDINQEKIVEEG 448 (660)
Q Consensus 371 i~~l~~~L~~~~~~vr~~~~~~laa-~~~~~~~I~e~ggI~~LV~LL~s~d~~vr~~Aa~aL~nLa~-~~en~~~Ive~G 448 (660)
+..+...+.++.+.+|..+++.++. ..+... ...+|.+..++.++++.||..|+.++..++. +++. +...+
T Consensus 88 ~n~l~kdL~~~n~~ir~~AL~~L~~i~~~~~~----~~l~~~l~~~L~d~~~~VRk~A~~al~~i~~~~p~~---~~~~~ 160 (591)
T 2vgl_B 88 VNSFVKDCEDPNPLIRALAVRTMGCIRVDKIT----EYLCEPLRKCLKDEDPYVRKTAAVCVAKLHDINAQM---VEDQG 160 (591)
T ss_dssp HHHHGGGSSSSSHHHHHHHHHHHHTCCSGGGH----HHHHHHHHHHSSCSCHHHHHHHHHHHHHHHHSSCCC---HHHHH
T ss_pred HHHHHHHcCCCCHHHHHHHHHHHHcCChHHHH----HHHHHHHHHHcCCCChHHHHHHHHHHHHHHhhChhh---ccccc
Confidence 3345566777777777777776332 222111 1235678888889999999999999998877 4542 23345
Q ss_pred CHHHHHHHHccCCCHHHHHHHHHHHHHhhcC-chh---------HHHHHh----------------------------cC
Q 006114 449 GLDALLLLLRTSQNTTILRVASGAIANLAMN-EMN---------QGLIMS----------------------------RG 490 (660)
Q Consensus 449 gI~~Lv~LL~~s~d~~v~~~Aa~AL~nLA~~-~~n---------~~~Ive----------------------------~g 490 (660)
.++.|..+|. ++|+.|+..|+.+|..++.+ ++. -..++. ..
T Consensus 161 ~~~~l~~lL~-d~d~~V~~~A~~aL~~i~~~~~~~~~~~l~~~~~~~Ll~~l~~~~~~~q~~il~~l~~l~~~~~~~~~~ 239 (591)
T 2vgl_B 161 FLDSLRDLIA-DSNPMVVANAVAALSEISESHPNSNLLDLNPQNINKLLTALNECTEWGQIFILDCLSNYNPKDDREAQS 239 (591)
T ss_dssp HHHHHHHTTS-CSCHHHHHHHHHHHHHHTTSCCSCCSCCCHHHHHHHHHHHHHHCCHHHHHHHHHHHHTSCCCSHHHHHH
T ss_pred HHHHHHHHhC-CCChhHHHHHHHHHHHHHhhCCCccchhccHHHHHHHHHcCCCCCchHHHHHHHHHHHhCCCChHHHHH
Confidence 6888888886 78999999999999998865 211 111111 12
Q ss_pred ccHHHHHhhcCCCCHHHHHHHHHHHHHHhc----ChhHHHHHHhccHHHHHHHHhcCCCHHHHHHHHHHHHHhhccchhh
Q 006114 491 GGQLLAKTASKTDDPQTLRMVAGALANLCG----NEKLHTMLEEDGAIKALLAMVRSGNIDVIAQVARGLANFAKCESRA 566 (660)
Q Consensus 491 ~I~~Ll~LL~~s~d~~v~~~Aa~aLanLa~----~~~~r~~iv~~G~V~~Lv~lL~s~~~~v~~~Al~aLanLA~~~~~~ 566 (660)
.++.+..++.+ .++.|+..|+++|..++. +++....++ .++++.|+.++ +++++++..|+.+|+.++..++..
T Consensus 240 ~l~~l~~~l~~-~~~~V~~ea~~~i~~l~~~~~~~~~~~~~~~-~~~~~~L~~L~-~~d~~vr~~aL~~l~~i~~~~p~~ 316 (591)
T 2vgl_B 240 ICERVTPRLSH-ANSAVVLSAVKVLMKFLELLPKDSDYYNMLL-KKLAPPLVTLL-SGEPEVQYVALRNINLIVQKRPEI 316 (591)
T ss_dssp HHHHHTTCSCS-STTHHHHHHHHHHHHSCCSCCBTTBSHHHHH-HHTHHHHHHHT-TSCHHHHHHHHHHHHHHHHHCCST
T ss_pred HHHHHHHHHcC-CChHHHHHHHHHHHHHhhccCCCHHHHHHHH-HHHHHHHHHHh-cCCccHHHHHHHHHHHHHHhChHH
Confidence 45556666654 678999999999999873 344444333 34567777665 488999999999999998655433
Q ss_pred hhhc--------c--hhh-hH---H---HhhcC----hHHHHHHhhcCCCHHHHHHHHHHHHHhhcCCccHHHHHhcCcH
Q 006114 567 IVQG--------Q--RKG-RS---H---LMEDS----ALEWLIANSKTNSASTRRHVELALCHLAQNEDNARDFISRGGA 625 (660)
Q Consensus 567 ~aq~--------~--~e~-r~---~---Li~~G----~v~~Lv~lL~s~d~~vr~~Aa~AL~nLa~~~e~~~~Ive~G~l 625 (660)
.... . ... +. . +.... .++.|..++.+.+..++..++++++.||..... .....+
T Consensus 317 ~~~~~~~~~~~~~d~~~Ir~~al~~L~~l~~~~nv~~iv~~L~~~l~~~d~~~r~~~v~aI~~la~~~~~----~~~~~v 392 (591)
T 2vgl_B 317 LKQEIKVFFVKYNDPIYVKLEKLDIMIRLASQANIAQVLAELKEYATEVDVDFVRKAVRAIGRCAIKVEQ----SAERCV 392 (591)
T ss_dssp TTTCTTTTSCCTTSCHHHHHHHHHHHHHTCCSSTHHHHHHHHHHHTTSSCHHHHHHHHHHHHHHHTTCHH----HHHHHH
T ss_pred HHHHHHhheeccCChHHHHHHHHHHHHHHCChhhHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHhChh----HHHHHH
Confidence 2110 0 001 11 1 12222 455666677788999999999999999976421 123466
Q ss_pred HHHHHHHhcCChHHHHHHHH---HHHhcCcchh
Q 006114 626 KELVQISIESSREDIRNLAK---KTMKSNPRLQ 655 (660)
Q Consensus 626 ~~Lv~lL~s~s~~~ir~~A~---~~L~~~p~~~ 655 (660)
+.|+.++............. .++..+|..+
T Consensus 393 ~~Ll~ll~~~~~~v~~e~i~~l~~ii~~~p~~~ 425 (591)
T 2vgl_B 393 STLLDLIQTKVNYVVQEAIVVIRDIFRKYPNKY 425 (591)
T ss_dssp HHHHHHHHTCCHHHHHHHHHHHHHHHHHSCSSC
T ss_pred HHHHHHHcccchHHHHHHHHHHHHHHHHCcchH
Confidence 78888887665544333322 4455566554
No 50
>4fdd_A Transportin-1; heat repeats, karyopherin, nuclear import, protein transport importin, transportin, transport protein; 2.30A {Homo sapiens} PDB: 2ot8_A 2h4m_A 2z5k_A 2z5j_A 2qmr_A 2z5m_A 2z5n_A 2z5o_A 1qbk_B*
Probab=98.89 E-value=7.5e-09 Score=122.09 Aligned_cols=265 Identities=14% Similarity=0.044 Sum_probs=175.8
Q ss_pred chhhhhhcccCCCccccccchhhhhhcCch-hHHHHHh--CCCHHHHHHhhCCCCHHHHHHHHHHHHHhhC-CchhHHHH
Q 006114 369 DYISKGSSRFGAPMSLQKSNPSRELSGQRA-TIAKICD--EVGLPKILQLLTSEDPDVQIHAVKVVANLAA-EDINQEKI 444 (660)
Q Consensus 369 g~i~~l~~~L~~~~~~vr~~~~~~laa~~~-~~~~I~e--~ggI~~LV~LL~s~d~~vr~~Aa~aL~nLa~-~~en~~~I 444 (660)
.-++.++.++.+..+.+|..++++++.--. ....+.. ...++.|+.++.++++.+|..|+.+|..++. .+..-...
T Consensus 174 ~il~~l~~~l~~~~~~vR~~A~~aL~~~~~~~~~~~~~~~~~~l~~l~~~~~d~~~~vr~~a~~~L~~l~~~~~~~~~~~ 253 (852)
T 4fdd_A 174 IMIPKFLQFFKHSSPKIRSHAVACVNQFIISRTQALMLHIDSFIENLFALAGDEEPEVRKNVCRALVMLLEVRMDRLLPH 253 (852)
T ss_dssp HHHHHHTTTTTCSSHHHHHHHHHHHHTTTTTTCHHHHTSHHHHHHHHHHHHTCCCHHHHHHHHHHHHHHHHHCHHHHGGG
T ss_pred HHHHHHHHHhcCCCHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHhCHHHHHHH
Confidence 456667777888777787777666321110 0011111 1357888888889999999999999999987 43321111
Q ss_pred HHcCCHHHHHHHHccCCCHHHHHHHHHHHHHhhcCchhHHHHHh--cCccHHHHHhhc----------CC----------
Q 006114 445 VEEGGLDALLLLLRTSQNTTILRVASGAIANLAMNEMNQGLIMS--RGGGQLLAKTAS----------KT---------- 502 (660)
Q Consensus 445 ve~GgI~~Lv~LL~~s~d~~v~~~Aa~AL~nLA~~~~n~~~Ive--~g~I~~Ll~LL~----------~s---------- 502 (660)
.. +.++.++.++. +.++.++..|+.++..++..+..+..+.. ...+|.++..+. ..
T Consensus 254 l~-~l~~~l~~~~~-~~~~~vr~~a~e~l~~l~~~~~~~~~~~~~~~~l~p~ll~~l~~~e~d~~~~~~d~~ed~~~dd~ 331 (852)
T 4fdd_A 254 MH-NIVEYMLQRTQ-DQDENVALEACEFWLTLAEQPICKDVLVRHLPKLIPVLVNGMKYSDIDIILLKGDVEGGSGGDDT 331 (852)
T ss_dssp HH-HHHHHHHHHHT-CSSHHHHHHHHHHHHHHTTSTTHHHHHTTTHHHHHHHHHHHTSCCHHHHHHHHC-----------
T ss_pred HH-HHHHHHHHHcc-CCcHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHHHHHHcCCcHhHHHHhcCCcccccccccc
Confidence 11 35777888887 77899999999999999876544432211 245667766662 11
Q ss_pred -CCHHHHHHHHHHHHHHhcChhHHHHHHhccHHHHHHHHhcCCCHHHHHHHHHHHHHhhccchhhhhhcchhhhHHHhhc
Q 006114 503 -DDPQTLRMVAGALANLCGNEKLHTMLEEDGAIKALLAMVRSGNIDVIAQVARGLANFAKCESRAIVQGQRKGRSHLMED 581 (660)
Q Consensus 503 -~d~~v~~~Aa~aLanLa~~~~~r~~iv~~G~V~~Lv~lL~s~~~~v~~~Al~aLanLA~~~~~~~aq~~~e~r~~Li~~ 581 (660)
.+..++..|+.+|..++.... ..++ ..+++.+..++.++++.++..|+.+|++++...+... . -.-.
T Consensus 332 ~~~~~vr~~a~~~L~~la~~~~--~~~~-~~l~~~l~~~l~~~~~~~R~aa~~alg~i~~~~~~~~-------~--~~l~ 399 (852)
T 4fdd_A 332 ISDWNLRKCSAAALDVLANVYR--DELL-PHILPLLKELLFHHEWVVKESGILVLGAIAEGCMQGM-------I--PYLP 399 (852)
T ss_dssp -CCCCHHHHHHHHHHHHHHHHG--GGGH-HHHHHHHHHHHTCSSHHHHHHHHHHHHHTTTTTHHHH-------G--GGHH
T ss_pred cccchHHHHHHHHHHHHHHhcc--HHHH-HHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhcchHHH-------H--HHHH
Confidence 112357788888888873221 1122 2467888888889999999999999999997543211 1 1225
Q ss_pred ChHHHHHHhhcCCCHHHHHHHHHHHHHhhcCCc-cHHHHHhcCcHHHHHHHHhcCChHHHHHHHHHHH
Q 006114 582 SALEWLIANSKTNSASTRRHVELALCHLAQNED-NARDFISRGGAKELVQISIESSREDIRNLAKKTM 648 (660)
Q Consensus 582 G~v~~Lv~lL~s~d~~vr~~Aa~AL~nLa~~~e-~~~~Ive~G~l~~Lv~lL~s~s~~~ir~~A~~~L 648 (660)
++++.++..+.+.++.||..|+|+|++++.+.. ......-.++++.|+..+.+.+ ..++..|..+|
T Consensus 400 ~~l~~l~~~l~d~~~~Vr~~a~~~l~~l~~~~~~~~~~~~~~~ll~~L~~~L~d~~-~~vr~~a~~aL 466 (852)
T 4fdd_A 400 ELIPHLIQCLSDKKALVRSITCWTLSRYAHWVVSQPPDTYLKPLMTELLKRILDSN-KRVQEAACSAF 466 (852)
T ss_dssp HHHHHHHHHTTCSSHHHHHHHHHHHHHTHHHHHHSCTTTTHHHHHHHHHHHHTCSS-HHHHHHHHHHH
T ss_pred HHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHhCCC-HHHHHHHHHHH
Confidence 688999999999999999999999999986421 1011112357888888887654 45555555554
No 51
>1b3u_A Protein (protein phosphatase PP2A); scaffold protein, phosphorylation, heat repeat; 2.30A {Homo sapiens} SCOP: a.118.1.2 PDB: 2ie4_A* 2ie3_A* 2npp_A* 3k7v_A* 3k7w_A* 3fga_A* 2pf4_A 2iae_A 2nym_A* 2nyl_A* 3dw8_A* 2pkg_A 3c5w_A
Probab=98.82 E-value=6.2e-08 Score=107.68 Aligned_cols=255 Identities=14% Similarity=0.054 Sum_probs=173.2
Q ss_pred hhcccCCCccccccchhhhhhcCchhH-HHHHhCCCHHHHHHhhCCCCHHHHHHHHHHHHHhhCCchhHHHHHHcCCHHH
Q 006114 374 GSSRFGAPMSLQKSNPSRELSGQRATI-AKICDEVGLPKILQLLTSEDPDVQIHAVKVVANLAAEDINQEKIVEEGGLDA 452 (660)
Q Consensus 374 l~~~L~~~~~~vr~~~~~~laa~~~~~-~~I~e~ggI~~LV~LL~s~d~~vr~~Aa~aL~nLa~~~en~~~Ive~GgI~~ 452 (660)
+...+.+....+|......++.-.... ...+....+|.++.++.++++.||..++.+|+.++..-... . .....+|.
T Consensus 329 l~~~l~d~~~~vR~~a~~~l~~l~~~~~~~~~~~~l~p~l~~~l~d~~~~Vr~~a~~~l~~l~~~~~~~-~-~~~~~lp~ 406 (588)
T 1b3u_A 329 IKELVSDANQHVKSALASVIMGLSPILGKDNTIEHLLPLFLAQLKDECPEVRLNIISNLDCVNEVIGIR-Q-LSQSLLPA 406 (588)
T ss_dssp HHHHHTCSCHHHHHHHHTTGGGGHHHHCHHHHHHHTHHHHHHHHTCSCHHHHHHHHTTCHHHHHHSCHH-H-HHHHHHHH
T ss_pred HHHHhcCCCHHHHHHHHHHHHHHHHHhhHhHHHHHHHHHHHHHhCCCchHHHHHHHHHHHHHHHhcCHH-H-HHHHHHHH
Confidence 334455666666665544422211110 01112346788889999999999999999998877521111 1 12235788
Q ss_pred HHHHHccCCCHHHHHHHHHHHHHhhcCchhHHHHHhcCccHHHHHhhcCCCCHHHHHHHHHHHHHHhcChhHHHHHHhcc
Q 006114 453 LLLLLRTSQNTTILRVASGAIANLAMNEMNQGLIMSRGGGQLLAKTASKTDDPQTLRMVAGALANLCGNEKLHTMLEEDG 532 (660)
Q Consensus 453 Lv~LL~~s~d~~v~~~Aa~AL~nLA~~~~n~~~Ive~g~I~~Ll~LL~~s~d~~v~~~Aa~aLanLa~~~~~r~~iv~~G 532 (660)
|+.++. +++..++..++.+|..++..-.. .+.....+|.++.++.+ +++.++..|+.+|+.++..-.. ...-..
T Consensus 407 l~~~~~-d~~~~vr~~~~~~l~~l~~~~~~--~~~~~~l~~~l~~~l~d-~~~~Vr~~a~~~l~~l~~~~~~--~~~~~~ 480 (588)
T 1b3u_A 407 IVELAE-DAKWRVRLAIIEYMPLLAGQLGV--EFFDEKLNSLCMAWLVD-HVYAIREAATSNLKKLVEKFGK--EWAHAT 480 (588)
T ss_dssp HHHHHT-CSSHHHHHHHHHHHHHHHHHHCG--GGCCHHHHHHHHHGGGC-SSHHHHHHHHHHHHHHHHHHCH--HHHHHH
T ss_pred HHHHhc-CCCchHHHHHHHHHHHHHHHcCH--HHHHHHHHHHHHHHhcC-CcHHHHHHHHHHHHHHHHHhCc--hhHHHH
Confidence 888886 78899999999999998753110 01223467888888875 6789999999999998732111 122346
Q ss_pred HHHHHHHHhcCCCHHHHHHHHHHHHHhhccchhhhhhcchhhhHHHhhcChHHHHHHhhcCCCHHHHHHHHHHHHHhhcC
Q 006114 533 AIKALLAMVRSGNIDVIAQVARGLANFAKCESRAIVQGQRKGRSHLMEDSALEWLIANSKTNSASTRRHVELALCHLAQN 612 (660)
Q Consensus 533 ~V~~Lv~lL~s~~~~v~~~Al~aLanLA~~~~~~~aq~~~e~r~~Li~~G~v~~Lv~lL~s~d~~vr~~Aa~AL~nLa~~ 612 (660)
++|.|+.++.+++..++..++.+++.++..- +. .......+|.|+.++.+.++.||..++++|+.++..
T Consensus 481 llp~l~~~~~~~~~~~R~~a~~~l~~l~~~~----------~~-~~~~~~~~~~l~~~l~d~~~~Vr~~a~~~l~~l~~~ 549 (588)
T 1b3u_A 481 IIPKVLAMSGDPNYLHRMTTLFCINVLSEVC----------GQ-DITTKHMLPTVLRMAGDPVANVRFNVAKSLQKIGPI 549 (588)
T ss_dssp THHHHHHTTTCSCHHHHHHHHHHHHHHHHHH----------HH-HHHHHHTHHHHHHGGGCSCHHHHHHHHHHHHHHGGG
T ss_pred HHHHHHHHhhCCCHHHHHHHHHHHHHHHHhc----------CH-HHHHHHHHHHHHhhCCCCCchHHHHHHHHHHHHHHH
Confidence 7888888888899999999999999998431 11 123356889999999999999999999999999865
Q ss_pred CccHHHHHhcCcHHHHHHHHhcCChHHHHHHHHHHHhc
Q 006114 613 EDNARDFISRGGAKELVQISIESSREDIRNLAKKTMKS 650 (660)
Q Consensus 613 ~e~~~~Ive~G~l~~Lv~lL~s~s~~~ir~~A~~~L~~ 650 (660)
-.. ......++|.|..++. ..+.++|..|..+|..
T Consensus 550 ~~~--~~~~~~~~p~l~~l~~-d~d~~vr~~a~~al~~ 584 (588)
T 1b3u_A 550 LDN--STLQSEVKPILEKLTQ-DQDVDVKYFAQEALTV 584 (588)
T ss_dssp SCH--HHHHHHHHHHHHHHTT-CSSHHHHHHHHHHHHH
T ss_pred hch--hhhHHHHHHHHHHHcC-CCchhHHHHHHHHHHH
Confidence 422 2233456677777654 4556788888888754
No 52
>4fdd_A Transportin-1; heat repeats, karyopherin, nuclear import, protein transport importin, transportin, transport protein; 2.30A {Homo sapiens} PDB: 2ot8_A 2h4m_A 2z5k_A 2z5j_A 2qmr_A 2z5m_A 2z5n_A 2z5o_A 1qbk_B*
Probab=98.82 E-value=1.6e-08 Score=119.30 Aligned_cols=265 Identities=15% Similarity=0.079 Sum_probs=173.0
Q ss_pred chhhhhhcccCCCccccccchhhhhhcCchhHHHHHh--------CCCHHHHHHhhCCCCHHHHHHHHHHHHHhhCCchh
Q 006114 369 DYISKGSSRFGAPMSLQKSNPSRELSGQRATIAKICD--------EVGLPKILQLLTSEDPDVQIHAVKVVANLAAEDIN 440 (660)
Q Consensus 369 g~i~~l~~~L~~~~~~vr~~~~~~laa~~~~~~~I~e--------~ggI~~LV~LL~s~d~~vr~~Aa~aL~nLa~~~en 440 (660)
+-++.++..+.+....++..++..++.-.......+. .+.+|.++.++.+++..+|..|+++|.++......
T Consensus 128 ~ll~~L~~~l~~~~~~~r~~al~~L~~i~~~~~~~~~~~~~~~~~~~il~~l~~~l~~~~~~vR~~A~~aL~~~~~~~~~ 207 (852)
T 4fdd_A 128 DLLPKLCSLLDSEDYNTCEGAFGALQKICEDSAEILDSDVLDRPLNIMIPKFLQFFKHSSPKIRSHAVACVNQFIISRTQ 207 (852)
T ss_dssp THHHHHHHHHSCSSHHHHHHHHHHHHHHHHHHTTHHHHCSSSSCHHHHHHHHTTTTTCSSHHHHHHHHHHHHTTTTTTCH
T ss_pred HHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHhHHHhchhhhcchHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhcccH
Confidence 4566677777777666666655442111111111111 12467777888899999999999999987763222
Q ss_pred HHHHHHcCCHHHHHHHHccCCCHHHHHHHHHHHHHhhcC-chhHHHHHhcCccHHHHHhhcCCCCHHHHHHHHHHHHHHh
Q 006114 441 QEKIVEEGGLDALLLLLRTSQNTTILRVASGAIANLAMN-EMNQGLIMSRGGGQLLAKTASKTDDPQTLRMVAGALANLC 519 (660)
Q Consensus 441 ~~~Ive~GgI~~Lv~LL~~s~d~~v~~~Aa~AL~nLA~~-~~n~~~Ive~g~I~~Ll~LL~~s~d~~v~~~Aa~aLanLa 519 (660)
...-.-.+.++.|+.++. ++++.++..|+.+|..|+.. +..-...+ .++++.++.++.+ .++.++..|+.++..++
T Consensus 208 ~~~~~~~~~l~~l~~~~~-d~~~~vr~~a~~~L~~l~~~~~~~~~~~l-~~l~~~l~~~~~~-~~~~vr~~a~e~l~~l~ 284 (852)
T 4fdd_A 208 ALMLHIDSFIENLFALAG-DEEPEVRKNVCRALVMLLEVRMDRLLPHM-HNIVEYMLQRTQD-QDENVALEACEFWLTLA 284 (852)
T ss_dssp HHHTSHHHHHHHHHHHHT-CCCHHHHHHHHHHHHHHHHHCHHHHGGGH-HHHHHHHHHHHTC-SSHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHHHHHhCHHHHHHHH-HHHHHHHHHHccC-CcHHHHHHHHHHHHHHh
Confidence 110001235788888886 78999999999999999865 33211111 2478888888865 78899999999999998
Q ss_pred cChhHHHHHHh--ccHHHHHHHHhc-----------C-----------CCHHHHHHHHHHHHHhhccchhhhhhcchhhh
Q 006114 520 GNEKLHTMLEE--DGAIKALLAMVR-----------S-----------GNIDVIAQVARGLANFAKCESRAIVQGQRKGR 575 (660)
Q Consensus 520 ~~~~~r~~iv~--~G~V~~Lv~lL~-----------s-----------~~~~v~~~Al~aLanLA~~~~~~~aq~~~e~r 575 (660)
..+..+..+.. ...+|.++..+. . .+..++..|+.+|+.++...+
T Consensus 285 ~~~~~~~~~~~~~~~l~p~ll~~l~~~e~d~~~~~~d~~ed~~~dd~~~~~~vr~~a~~~L~~la~~~~----------- 353 (852)
T 4fdd_A 285 EQPICKDVLVRHLPKLIPVLVNGMKYSDIDIILLKGDVEGGSGGDDTISDWNLRKCSAAALDVLANVYR----------- 353 (852)
T ss_dssp TSTTHHHHHTTTHHHHHHHHHHHTSCCHHHHHHHHC------------CCCCHHHHHHHHHHHHHHHHG-----------
T ss_pred cchhHHHHHHHHHHHHHHHHHHHcCCcHhHHHHhcCCcccccccccccccchHHHHHHHHHHHHHHhcc-----------
Confidence 66544432211 256677777762 2 112368889999998885321
Q ss_pred HHHhhcChHHHHHHhhcCCCHHHHHHHHHHHHHhhcCCccHHHHHhcCcHHHHHHHHhcCChHHHHHHHHHHHh
Q 006114 576 SHLMEDSALEWLIANSKTNSASTRRHVELALCHLAQNEDNARDFISRGGAKELVQISIESSREDIRNLAKKTMK 649 (660)
Q Consensus 576 ~~Li~~G~v~~Lv~lL~s~d~~vr~~Aa~AL~nLa~~~e~~~~Ive~G~l~~Lv~lL~s~s~~~ir~~A~~~L~ 649 (660)
..+ -..+++.+..++.+.+..+|..|+++|++++........-.-.++++.|+..+.+++ +.+|..|..+|.
T Consensus 354 ~~~-~~~l~~~l~~~l~~~~~~~R~aa~~alg~i~~~~~~~~~~~l~~~l~~l~~~l~d~~-~~Vr~~a~~~l~ 425 (852)
T 4fdd_A 354 DEL-LPHILPLLKELLFHHEWVVKESGILVLGAIAEGCMQGMIPYLPELIPHLIQCLSDKK-ALVRSITCWTLS 425 (852)
T ss_dssp GGG-HHHHHHHHHHHHTCSSHHHHHHHHHHHHHTTTTTHHHHGGGHHHHHHHHHHHTTCSS-HHHHHHHHHHHH
T ss_pred HHH-HHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHcCCCC-HHHHHHHHHHHH
Confidence 111 124678888888889999999999999999876632111123567888899887654 456666665553
No 53
>1b3u_A Protein (protein phosphatase PP2A); scaffold protein, phosphorylation, heat repeat; 2.30A {Homo sapiens} SCOP: a.118.1.2 PDB: 2ie4_A* 2ie3_A* 2npp_A* 3k7v_A* 3k7w_A* 3fga_A* 2pf4_A 2iae_A 2nym_A* 2nyl_A* 3dw8_A* 2pkg_A 3c5w_A
Probab=98.79 E-value=5.4e-08 Score=108.21 Aligned_cols=218 Identities=10% Similarity=0.075 Sum_probs=147.3
Q ss_pred hhcccCCCccccccchhhh---hhcCchhHHHHHhCCCHHHHHHhhCCCCHHHHHHHHHHHHHhhCC-chhHHHHHHcCC
Q 006114 374 GSSRFGAPMSLQKSNPSRE---LSGQRATIAKICDEVGLPKILQLLTSEDPDVQIHAVKVVANLAAE-DINQEKIVEEGG 449 (660)
Q Consensus 374 l~~~L~~~~~~vr~~~~~~---laa~~~~~~~I~e~ggI~~LV~LL~s~d~~vr~~Aa~aL~nLa~~-~en~~~Ive~Gg 449 (660)
+...+.+..+.+|..+... ++...+. .......+|.++.++.+++..+|..|+.+|+.++.. +.. ......
T Consensus 169 l~~l~~d~~~~VR~~a~~~l~~l~~~~~~--~~~~~~l~~~l~~~~~d~~~~vr~~a~~~l~~l~~~~~~~---~~~~~~ 243 (588)
T 1b3u_A 169 FRNLCSDDTPMVRRAAASKLGEFAKVLEL--DNVKSEIIPMFSNLASDEQDSVRLLAVEACVNIAQLLPQE---DLEALV 243 (588)
T ss_dssp HHHHHTCSCHHHHHHHHHHHHHHHHTSCH--HHHHHTHHHHHHHHHTCSCHHHHTTHHHHHHHHHHHSCHH---HHHHHT
T ss_pred HHHHhCCCCHHHHHHHHHHHHHHHHHhcH--HhHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHhCCHH---HHHHHH
Confidence 3345566777777766555 2221111 112235678888899999999999999999998862 211 122336
Q ss_pred HHHHHHHHccCCCHHHHHHHHHHHHHhhcCchhHHHHHhcCccHHHHHhhcCCCCHHHHHHHHHHHHHHhc--ChhHHHH
Q 006114 450 LDALLLLLRTSQNTTILRVASGAIANLAMNEMNQGLIMSRGGGQLLAKTASKTDDPQTLRMVAGALANLCG--NEKLHTM 527 (660)
Q Consensus 450 I~~Lv~LL~~s~d~~v~~~Aa~AL~nLA~~~~n~~~Ive~g~I~~Ll~LL~~s~d~~v~~~Aa~aLanLa~--~~~~r~~ 527 (660)
+|.+..++. +++..+|..|+.+|+.++..... .......++.++.++.+ +++.++..|+++|..++. .+..+..
T Consensus 244 ~~~l~~~~~-d~~~~vR~~a~~~l~~l~~~~~~--~~~~~~l~~~l~~~l~d-~~~~vr~~a~~~l~~~~~~~~~~~~~~ 319 (588)
T 1b3u_A 244 MPTLRQAAE-DKSWRVRYMVADKFTELQKAVGP--EITKTDLVPAFQNLMKD-CEAEVRAAASHKVKEFCENLSADCREN 319 (588)
T ss_dssp HHHHHHHHT-CSSHHHHHHHHHTHHHHHHHHCH--HHHHHTHHHHHHHHHTC-SSHHHHHHHHHHHHHHHHTSCTTTHHH
T ss_pred HHHHHHHcc-CCCHHHHHHHHHHHHHHHHHhCc--ccchhHHHHHHHHHhCC-CcHHHHHHHHHHHHHHHHHhChhhhhh
Confidence 888888886 78899999999999999764111 12334578999999975 789999999999999873 2222222
Q ss_pred HHhccHHHHHHHHhcCCCHHHHHHHHHHHHHhhccchhhhhhcchhhhHHHhhcChHHHHHHhhcCCCHHHHHHHHHHHH
Q 006114 528 LEEDGAIKALLAMVRSGNIDVIAQVARGLANFAKCESRAIVQGQRKGRSHLMEDSALEWLIANSKTNSASTRRHVELALC 607 (660)
Q Consensus 528 iv~~G~V~~Lv~lL~s~~~~v~~~Al~aLanLA~~~~~~~aq~~~e~r~~Li~~G~v~~Lv~lL~s~d~~vr~~Aa~AL~ 607 (660)
..-...+|.+..++.++++.++..++.+|+.++..-+ .. ......+|.+..++.+.++.||..++.+|.
T Consensus 320 ~~~~~l~p~l~~~l~d~~~~vR~~a~~~l~~l~~~~~----------~~-~~~~~l~p~l~~~l~d~~~~Vr~~a~~~l~ 388 (588)
T 1b3u_A 320 VIMSQILPCIKELVSDANQHVKSALASVIMGLSPILG----------KD-NTIEHLLPLFLAQLKDECPEVRLNIISNLD 388 (588)
T ss_dssp HHHHTHHHHHHHHHTCSCHHHHHHHHTTGGGGHHHHC----------HH-HHHHHTHHHHHHHHTCSCHHHHHHHHTTCH
T ss_pred HHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHhh----------Hh-HHHHHHHHHHHHHhCCCchHHHHHHHHHHH
Confidence 2334678888999999999999999999988874211 00 111235566666666666677777666666
Q ss_pred Hhhc
Q 006114 608 HLAQ 611 (660)
Q Consensus 608 nLa~ 611 (660)
.++.
T Consensus 389 ~l~~ 392 (588)
T 1b3u_A 389 CVNE 392 (588)
T ss_dssp HHHH
T ss_pred HHHH
Confidence 6543
No 54
>2vgl_B AP-2 complex subunit beta-1; cytoplasmic vesicle, alternative splicing, endocytosis, lipid-binding, golgi apparatus, adaptor, membrane, transport; HET: IHP; 2.59A {Homo sapiens} SCOP: i.23.1.1 PDB: 2jkt_B 2jkr_B* 2xa7_B 1w63_B
Probab=98.75 E-value=6.6e-08 Score=109.97 Aligned_cols=247 Identities=13% Similarity=0.105 Sum_probs=168.8
Q ss_pred hhhhhcccCCCccccccchhhh---hhcCchhHHHHHhCCCHHHHHHhhCCCCHHHHHHHHHHHHHhhCCchhHHHHHHc
Q 006114 371 ISKGSSRFGAPMSLQKSNPSRE---LSGQRATIAKICDEVGLPKILQLLTSEDPDVQIHAVKVVANLAAEDINQEKIVEE 447 (660)
Q Consensus 371 i~~l~~~L~~~~~~vr~~~~~~---laa~~~~~~~I~e~ggI~~LV~LL~s~d~~vr~~Aa~aL~nLa~~~en~~~Ive~ 447 (660)
...++..+.+....+|...... ++...+... --.+..+..-|.++++.+|..|+.+|+++. .++....
T Consensus 51 ~~~vi~l~~s~~~~~Krl~yl~l~~~~~~~~e~~----~l~~n~l~kdL~~~n~~ir~~AL~~L~~i~-~~~~~~~---- 121 (591)
T 2vgl_B 51 FPDVVNCMQTDNLELKKLVYLYLMNYAKSQPDMA----IMAVNSFVKDCEDPNPLIRALAVRTMGCIR-VDKITEY---- 121 (591)
T ss_dssp HHHHHHTTSSSCHHHHHHHHHHHHHHHHHSHHHH----HTTHHHHGGGSSSSSHHHHHHHHHHHHTCC-SGGGHHH----
T ss_pred HHHHHHHhCCCCHHHHHHHHHHHHHHcccCchHH----HHHHHHHHHHcCCCCHHHHHHHHHHHHcCC-hHHHHHH----
Confidence 3445555666555555433222 222111111 134667777788999999999999998886 3333222
Q ss_pred CCHHHHHHHHccCCCHHHHHHHHHHHHHhhcC-chhHHHHHhcCccHHHHHhhcCCCCHHHHHHHHHHHHHHhcC-hhHH
Q 006114 448 GGLDALLLLLRTSQNTTILRVASGAIANLAMN-EMNQGLIMSRGGGQLLAKTASKTDDPQTLRMVAGALANLCGN-EKLH 525 (660)
Q Consensus 448 GgI~~Lv~LL~~s~d~~v~~~Aa~AL~nLA~~-~~n~~~Ive~g~I~~Ll~LL~~s~d~~v~~~Aa~aLanLa~~-~~~r 525 (660)
.+|.+..+|. ++++.|+..|+.++..++.. |+ .+...+.++.|..+|.+ +++.|+..|+++|..++.. +..+
T Consensus 122 -l~~~l~~~L~-d~~~~VRk~A~~al~~i~~~~p~---~~~~~~~~~~l~~lL~d-~d~~V~~~A~~aL~~i~~~~~~~~ 195 (591)
T 2vgl_B 122 -LCEPLRKCLK-DEDPYVRKTAAVCVAKLHDINAQ---MVEDQGFLDSLRDLIAD-SNPMVVANAVAALSEISESHPNSN 195 (591)
T ss_dssp -HHHHHHHHSS-CSCHHHHHHHHHHHHHHHHSSCC---CHHHHHHHHHHHHTTSC-SCHHHHHHHHHHHHHHTTSCCSCC
T ss_pred -HHHHHHHHcC-CCChHHHHHHHHHHHHHHhhChh---hcccccHHHHHHHHhCC-CChhHHHHHHHHHHHHHhhCCCcc
Confidence 3677889897 88999999999999999764 44 22335788999999974 8999999999999999843 3221
Q ss_pred HHHHhccHHHHHHHHhcCCCHHHHHHHHHHHHHhhccchhhhhhcchhhhHHHhhcChHHHHHHhhcCCCHHHHHHHHHH
Q 006114 526 TMLEEDGAIKALLAMVRSGNIDVIAQVARGLANFAKCESRAIVQGQRKGRSHLMEDSALEWLIANSKTNSASTRRHVELA 605 (660)
Q Consensus 526 ~~iv~~G~V~~Lv~lL~s~~~~v~~~Al~aLanLA~~~~~~~aq~~~e~r~~Li~~G~v~~Lv~lL~s~d~~vr~~Aa~A 605 (660)
..-...+.+..|+..+...++-++..++.+++.++..+++. ....++.+..++.+.++.|+..|+++
T Consensus 196 ~~~l~~~~~~~Ll~~l~~~~~~~q~~il~~l~~l~~~~~~~-------------~~~~l~~l~~~l~~~~~~V~~ea~~~ 262 (591)
T 2vgl_B 196 LLDLNPQNINKLLTALNECTEWGQIFILDCLSNYNPKDDRE-------------AQSICERVTPRLSHANSAVVLSAVKV 262 (591)
T ss_dssp SCCCHHHHHHHHHHHHHHCCHHHHHHHHHHHHTSCCCSHHH-------------HHHHHHHHTTCSCSSTTHHHHHHHHH
T ss_pred chhccHHHHHHHHHcCCCCCchHHHHHHHHHHHhCCCChHH-------------HHHHHHHHHHHHcCCChHHHHHHHHH
Confidence 01112245777888888888989888999998887443211 13467888888999999999999999
Q ss_pred HHHhhc----CCccHHHHHhcCcHHHHHHHHhcCChHHHHHHHHHHH
Q 006114 606 LCHLAQ----NEDNARDFISRGGAKELVQISIESSREDIRNLAKKTM 648 (660)
Q Consensus 606 L~nLa~----~~e~~~~Ive~G~l~~Lv~lL~s~s~~~ir~~A~~~L 648 (660)
+..++. +++....++ .+++++|+.++. +++.+|-.|.++|
T Consensus 263 i~~l~~~~~~~~~~~~~~~-~~~~~~L~~L~~--~d~~vr~~aL~~l 306 (591)
T 2vgl_B 263 LMKFLELLPKDSDYYNMLL-KKLAPPLVTLLS--GEPEVQYVALRNI 306 (591)
T ss_dssp HHHSCCSCCBTTBSHHHHH-HHTHHHHHHHTT--SCHHHHHHHHHHH
T ss_pred HHHHhhccCCCHHHHHHHH-HHHHHHHHHHhc--CCccHHHHHHHHH
Confidence 999974 334444333 446678887653 4456666666544
No 55
>1w63_A Adapter-related protein complex 1 gamma 1 subunit; endocytosis, clathrin adaptor, transport, coated PITS; 4.0A {Mus musculus} SCOP: i.23.1.1
Probab=98.66 E-value=4.2e-07 Score=104.10 Aligned_cols=219 Identities=12% Similarity=0.057 Sum_probs=144.0
Q ss_pred hhhhhhcccCCCccccccchhhhhhc-CchhHHHHHhCCCHHHHHHhhCCCCHHHHHHHHHHHHHhhC-CchhHHHHHHc
Q 006114 370 YISKGSSRFGAPMSLQKSNPSRELSG-QRATIAKICDEVGLPKILQLLTSEDPDVQIHAVKVVANLAA-EDINQEKIVEE 447 (660)
Q Consensus 370 ~i~~l~~~L~~~~~~vr~~~~~~laa-~~~~~~~I~e~ggI~~LV~LL~s~d~~vr~~Aa~aL~nLa~-~~en~~~Ive~ 447 (660)
.+..+...+.++.+.+|..+++.++. ..+. ++ ...++.+..+|.++++.||..|+.+++.+.. .|+...
T Consensus 108 ~in~l~kDL~~~n~~vr~lAL~~L~~i~~~~---~~-~~l~~~l~~~L~~~~~~VRk~A~~al~~l~~~~p~~v~----- 178 (618)
T 1w63_A 108 MTNCIKNDLNHSTQFVQGLALCTLGCMGSSE---MC-RDLAGEVEKLLKTSNSYLRKKAALCAVHVIRKVPELME----- 178 (618)
T ss_dssp HHHHHHHHHSCSSSHHHHHHHHHHHHHCCHH---HH-HHHHHHHHHHHHSCCHHHHHHHHHHHHHHHHHCGGGGG-----
T ss_pred HHHHHHHhcCCCCHhHHHHHHHHHHhcCCHH---HH-HHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHChHHHH-----
Confidence 44556667778888888888777322 1221 21 2457888899999999999999999999987 564332
Q ss_pred CCHHHHHHHHccCCCHHHHHHHHHHHHHhhcC-chhHHHHHhcCccHHHHHhhcC--------------CCCHHHHHHHH
Q 006114 448 GGLDALLLLLRTSQNTTILRVASGAIANLAMN-EMNQGLIMSRGGGQLLAKTASK--------------TDDPQTLRMVA 512 (660)
Q Consensus 448 GgI~~Lv~LL~~s~d~~v~~~Aa~AL~nLA~~-~~n~~~Ive~g~I~~Ll~LL~~--------------s~d~~v~~~Aa 512 (660)
+.++.+..+|. +.|+.|+..|+.+|..++.. ++....+ ...+|.++.+|.+ ..+|.++..++
T Consensus 179 ~~~~~l~~lL~-D~d~~V~~~Al~~L~~i~~~~~~~~~~~--~~~v~~l~~~L~~~~~~~~~~~~~~~~~~~~~~q~~il 255 (618)
T 1w63_A 179 MFLPATKNLLN-EKNHGVLHTSVVLLTEMCERSPDMLAHF--RKLVPQLVRILKNLIMSGYSPEHDVSGISDPFLQVRIL 255 (618)
T ss_dssp GGGGGTTTSTT-CCCHHHHHHHHHHHHHHCCSHHHHHHHH--HTTHHHHHHHHHHHHHSCCCTTTCSSSSSCHHHHHHHH
T ss_pred HHHHHHHHHhC-CCCHhHHHHHHHHHHHHHHhChHHHHHH--HHHHHHHHHHHHHHHcCCCCccccccCCCCChHHHHHH
Confidence 56778888886 78999999999999999876 3322222 2456767766542 24677777777
Q ss_pred HHHHHHhc-ChhHHHHHH-------------------------------------hccHHHHHHHHhcCCCHHHHHHHHH
Q 006114 513 GALANLCG-NEKLHTMLE-------------------------------------EDGAIKALLAMVRSGNIDVIAQVAR 554 (660)
Q Consensus 513 ~aLanLa~-~~~~r~~iv-------------------------------------~~G~V~~Lv~lL~s~~~~v~~~Al~ 554 (660)
.+|+.++. +|.....+. ...+++.|..++.+++++++..|+.
T Consensus 256 ~~L~~l~~~~~~~~~~~~~~L~~l~~~~~~~~~~~~aV~~ea~~~i~~l~~~~~l~~~a~~~L~~~L~~~d~~vr~~aL~ 335 (618)
T 1w63_A 256 RLLRILGRNDDDSSEAMNDILAQVATNTETSKNVGNAILYETVLTIMDIKSESGLRVLAINILGRFLLNNDKNIRYVALT 335 (618)
T ss_dssp HHHHHHTTTCHHHHHTTHHHHHHHHHTSCCSSTHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHTCSSTTTHHHHHH
T ss_pred HHHHHhCCCCHHHHHHHHHHHHHHHhccccccchHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhCCCCchHHHHHH
Confidence 77777763 222111100 0135566777777777888888888
Q ss_pred HHHHhhccchhhhhhcchhhhHHHhhcChHHHHHHhhcCCCHHHHHHHHHHHHHhhcCC
Q 006114 555 GLANFAKCESRAIVQGQRKGRSHLMEDSALEWLIANSKTNSASTRRHVELALCHLAQNE 613 (660)
Q Consensus 555 aLanLA~~~~~~~aq~~~e~r~~Li~~G~v~~Lv~lL~s~d~~vr~~Aa~AL~nLa~~~ 613 (660)
+|+.++..++... ....+.++.++.+++..+|..|..+|..++...
T Consensus 336 ~L~~i~~~~p~~~-------------~~~~~~i~~~l~d~d~~Ir~~alelL~~l~~~~ 381 (618)
T 1w63_A 336 SLLKTVQTDHNAV-------------QRHRSTIVDCLKDLDVSIKRRAMELSFALVNGN 381 (618)
T ss_dssp HHHHHHHHHHHHH-------------GGGHHHHHHGGGSSCHHHHHHHHHHHHHHCCSS
T ss_pred HHHHHHhhCHHHH-------------HHHHHHHHHHccCCChhHHHHHHHHHHHHcccc
Confidence 8888775443221 124455666666666777777777777766543
No 56
>2qk2_A LP04448P; mini spindles, MSPS, XMAP215, DIS1, STU2, heat repeat, micro plus END, +TIP, protein binding; 2.10A {Drosophila melanogaster}
Probab=98.46 E-value=1.6e-06 Score=86.64 Aligned_cols=183 Identities=14% Similarity=0.143 Sum_probs=135.5
Q ss_pred HHHHhhCCCCHHHHHHHHHHHHHhhCC-chhH-HHHHHcCCHHHHHHHHccCCCHHHHHHHHHHHHHhhcC--chhHHHH
Q 006114 411 KILQLLTSEDPDVQIHAVKVVANLAAE-DINQ-EKIVEEGGLDALLLLLRTSQNTTILRVASGAIANLAMN--EMNQGLI 486 (660)
Q Consensus 411 ~LV~LL~s~d~~vr~~Aa~aL~nLa~~-~en~-~~Ive~GgI~~Lv~LL~~s~d~~v~~~Aa~AL~nLA~~--~~n~~~I 486 (660)
.+...+.+.+...|..|+..|..+... +... ..+ ...++.|..+|..+.+..++..|+.+|+.|+.. +....
T Consensus 19 ~l~~~l~s~~w~~R~~a~~~L~~l~~~~~~~~~~~~--~~i~~~L~~~l~kd~~~~V~~~a~~~l~~la~~l~~~~~~-- 94 (242)
T 2qk2_A 19 DFYDKLEEKKWTLRKESLEVLEKLLTDHPKLENGEY--GALVSALKKVITKDSNVVLVAMAGKCLALLAKGLAKRFSN-- 94 (242)
T ss_dssp THHHHHTCSSHHHHHHHHHHHHHHHHHCSSBCCCCC--HHHHHHHHHHHHHCSCHHHHHHHHHHHHHHHHHHGGGGHH--
T ss_pred HHHhhhccCCHHHHHHHHHHHHHHHccCCCCCCCCH--HHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHHhhhHHH--
Confidence 477788899999999999999988763 3211 001 113667778884378999999999999999865 22211
Q ss_pred HhcCccHHHHHhhcCCCCHHHHHHHHHHHHHHhcChhHHHHHHhccHHHHHHHHhcCCCHHHHHHHHHHHHHhhcc-chh
Q 006114 487 MSRGGGQLLAKTASKTDDPQTLRMVAGALANLCGNEKLHTMLEEDGAIKALLAMVRSGNIDVIAQVARGLANFAKC-ESR 565 (660)
Q Consensus 487 ve~g~I~~Ll~LL~~s~d~~v~~~Aa~aLanLa~~~~~r~~iv~~G~V~~Lv~lL~s~~~~v~~~Al~aLanLA~~-~~~ 565 (660)
.-..++|.++..+.+ .++.++..|+.+|.+++..... ...++.|...+.+.++.++..++..|+.+... .+.
T Consensus 95 ~~~~ilp~ll~~l~d-~~~~vr~~a~~aL~~~~~~~~~------~~ll~~l~~~l~~~~~~vr~~~l~~l~~~l~~~~~~ 167 (242)
T 2qk2_A 95 YASACVPSLLEKFKE-KKPNVVTALREAIDAIYASTSL------EAQQESIVESLSNKNPSVKSETALFIARALTRTQPT 167 (242)
T ss_dssp HHHHHHHHHHHGGGC-CCHHHHHHHHHHHHHHHTTSCH------HHHHHHHHHHTTCSCHHHHHHHHHHHHHHHTTCCGG
T ss_pred HHHHHHHHHHHHHcC-CCHHHHHHHHHHHHHHHHcCCH------HHHHHHHHHHHcCCChHHHHHHHHHHHHHHHHcCCC
Confidence 223478999999976 7889999999999999854332 23678888999999999999999999996533 221
Q ss_pred hhhhcchhhhHHHhhcChHHHHHHhhcCCCHHHHHHHHHHHHHhhcC
Q 006114 566 AIVQGQRKGRSHLMEDSALEWLIANSKTNSASTRRHVELALCHLAQN 612 (660)
Q Consensus 566 ~~aq~~~e~r~~Li~~G~v~~Lv~lL~s~d~~vr~~Aa~AL~nLa~~ 612 (660)
. .....+ ...+|.|+.++.+.++.||..|..+++.++..
T Consensus 168 ~------~~~~~l--~~l~p~l~~~l~D~~~~VR~~A~~~l~~l~~~ 206 (242)
T 2qk2_A 168 A------LNKKLL--KLLTTSLVKTLNEPDPTVRDSSAEALGTLIKL 206 (242)
T ss_dssp G------CCHHHH--HHHHHHHHHHHTSSCHHHHHHHHHHHHHHHHH
T ss_pred C------ccHHHH--HHHHHHHHHHhcCCChHHHHHHHHHHHHHHHH
Confidence 0 011111 35889999999999999999999999988753
No 57
>1ibr_B P95, importin beta-1 subunit, nuclear factor; small GTPase, nuclear transport receptor, cell cycle, translation; HET: GNP; 2.30A {Homo sapiens} SCOP: a.118.1.1 PDB: 1m5n_S 1gcj_A 1f59_A 1o6o_A 1o6p_A
Probab=98.44 E-value=1.7e-06 Score=92.96 Aligned_cols=225 Identities=12% Similarity=0.088 Sum_probs=147.6
Q ss_pred CHHHHHHhhCCC--CHHHHHHHHHHHHHhhCC-chhHH-HHHHcCCHHHHHHHHccCCCHHHHHHHHHHHHHhhcC-chh
Q 006114 408 GLPKILQLLTSE--DPDVQIHAVKVVANLAAE-DINQE-KIVEEGGLDALLLLLRTSQNTTILRVASGAIANLAMN-EMN 482 (660)
Q Consensus 408 gI~~LV~LL~s~--d~~vr~~Aa~aL~nLa~~-~en~~-~Ive~GgI~~Lv~LL~~s~d~~v~~~Aa~AL~nLA~~-~~n 482 (660)
.++.++.++.++ +..+|..|+.+++++... ..+-. .....-.++.|..++. ++++.++..++.+|..++.. +..
T Consensus 173 ll~~l~~~l~~~~~~~~vr~~a~~~l~~~~~~~~~~~~~~~~~~~l~~~l~~~~~-~~~~~vr~~~~~~l~~l~~~~~~~ 251 (462)
T 1ibr_B 173 ILTAIIQGMRKEEPSNNVKLAATNALLNSLEFTKANFDKESERHFIMQVVCEATQ-CPDTRVRVAALQNLVKIMSLYYQY 251 (462)
T ss_dssp HHHHHHHHHSTTCCCHHHHHHHHHHHHHHTTTTHHHHTSHHHHHHHHHHHHHHTT-CSSHHHHHHHHHHHHHHHHHCGGG
T ss_pred HHHHHHHHhCCCCCCHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHHHHHHHHH
Confidence 467777888877 799999999999987642 11110 0011112555556664 78999999999999999754 221
Q ss_pred HHHHHhcCccHHHHHhhcCCCCHHHHHHHHHHHHHHhcChhHHH------------------HHHh---ccHHHHHHHHh
Q 006114 483 QGLIMSRGGGQLLAKTASKTDDPQTLRMVAGALANLCGNEKLHT------------------MLEE---DGAIKALLAMV 541 (660)
Q Consensus 483 ~~~Ive~g~I~~Ll~LL~~s~d~~v~~~Aa~aLanLa~~~~~r~------------------~iv~---~G~V~~Lv~lL 541 (660)
-...+..++++.++..+.+ .++.++..|+..+..++....... .++. ...+|.++..+
T Consensus 252 ~~~~~~~~l~~~~~~~~~~-~~~~v~~~a~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~p~l~~~l 330 (462)
T 1ibr_B 252 METYMGPALFAITIEAMKS-DIDEVALQGIEFWSNVCDEEMDLAIEASEAAEQGRPPEHTSKFYAKGALQYLVPILTQTL 330 (462)
T ss_dssp CTTTTTTTHHHHHHHHHHC-SSHHHHHHHHHHHHHHHHHHHHHHHHHCCTTCSSSCSSCCCCCHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHcC-CchHHHHHHHHHHHHHHHHHHHHHHhcccccccCCCccchhHHHHHHHhhhccHHHHHHH
Confidence 1111111567777777764 788999999998888874321100 0111 34566777777
Q ss_pred cC-------CCHHHHHHHHHHHHHhhccchhhhhhcchhhhHHHhhcChHHHHHHhhcCCCHHHHHHHHHHHHHhhcCCc
Q 006114 542 RS-------GNIDVIAQVARGLANFAKCESRAIVQGQRKGRSHLMEDSALEWLIANSKTNSASTRRHVELALCHLAQNED 614 (660)
Q Consensus 542 ~s-------~~~~v~~~Al~aLanLA~~~~~~~aq~~~e~r~~Li~~G~v~~Lv~lL~s~d~~vr~~Aa~AL~nLa~~~e 614 (660)
.. .+..++..|+.+|+.++..-+ ..+ -..+++.+...+.+.+..+|..|+.+|+.++....
T Consensus 331 ~~~d~d~~~~~~~~r~~a~~~L~~l~~~~~-----------~~~-~~~~~~~l~~~l~~~~~~~r~aal~~l~~l~~~~~ 398 (462)
T 1ibr_B 331 TKQDENDDDDDWNPCKAAGVCLMLLATCCE-----------DDI-VPHVLPFIKEHIKNPDWRYRDAAVMAFGCILEGPE 398 (462)
T ss_dssp TCCCSSCCTTCCSHHHHHHHHHHHHHHHTT-----------TTH-HHHHHHHHHHHTTCSSHHHHHHHHHHHHHTSSSSC
T ss_pred HhcccccccccchHHHHHHHHHHHHHHhcc-----------HHH-HHHHHHHHHHHhcCCChHHHHHHHHHHHHHhcCCc
Confidence 53 234688899999999885321 111 13566777788888899999999999999986442
Q ss_pred -c-HHHHHhcCcHHHHHHHHhcCChHHHHHHHHHHH
Q 006114 615 -N-ARDFISRGGAKELVQISIESSREDIRNLAKKTM 648 (660)
Q Consensus 615 -~-~~~Ive~G~l~~Lv~lL~s~s~~~ir~~A~~~L 648 (660)
. .... -..++|.|+..+.+++ +.+|..|..+|
T Consensus 399 ~~~~~~~-l~~~~~~l~~~l~d~~-~~Vr~~a~~~l 432 (462)
T 1ibr_B 399 PSQLKPL-VIQAMPTLIELMKDPS-VVVRDTAAWTV 432 (462)
T ss_dssp TTTTCTT-TTTHHHHHHHGGGCSC-HHHHHHHHHHH
T ss_pred HHHHHHH-HHHHHHHHHHHhcCCC-HHHHHHHHHHH
Confidence 1 1111 1568899999998765 55666666555
No 58
>1te4_A Conserved protein MTH187; methanobacterium thermoautotrophicum, structural proteomics, heat-like repeat; NMR {Methanothermobacterthermautotrophicus} SCOP: a.118.1.16
Probab=98.40 E-value=4.3e-08 Score=89.23 Aligned_cols=117 Identities=18% Similarity=0.134 Sum_probs=50.6
Q ss_pred CHHHHHHhhCCCCHHHHHHHHHHHHHhhCCchhHHHHHHcCCHHHHHHHHccCCCHHHHHHHHHHHHHhhcCchhHHHHH
Q 006114 408 GLPKILQLLTSEDPDVQIHAVKVVANLAAEDINQEKIVEEGGLDALLLLLRTSQNTTILRVASGAIANLAMNEMNQGLIM 487 (660)
Q Consensus 408 gI~~LV~LL~s~d~~vr~~Aa~aL~nLa~~~en~~~Ive~GgI~~Lv~LL~~s~d~~v~~~Aa~AL~nLA~~~~n~~~Iv 487 (660)
.++.|+.+|.++++.+|..|+++|+.+... .++.|+.+|. ++++.++..|+++|+++..
T Consensus 13 ~~~~l~~~L~~~~~~vR~~A~~~L~~~~~~-----------~~~~L~~~L~-d~~~~vR~~A~~aL~~~~~--------- 71 (131)
T 1te4_A 13 GLVPRGSHMADENKWVRRDVSTALSRMGDE-----------AFEPLLESLS-NEDWRIRGAAAWIIGNFQD--------- 71 (131)
T ss_dssp --------CCSSCCCSSSSCCSSTTSCSST-----------THHHHHHGGG-CSCHHHHHHHHHHHGGGCS---------
T ss_pred cHHHHHHHhcCCCHHHHHHHHHHHHHhCch-----------HHHHHHHHHc-CCCHHHHHHHHHHHHhcCC---------
Confidence 344455555555555555555444433211 2445555554 4455555555555554421
Q ss_pred hcCccHHHHHhhcCCCCHHHHHHHHHHHHHHhcChhHHHHHHhccHHHHHHHHhcCCCHHHHHHHHHHHH
Q 006114 488 SRGGGQLLAKTASKTDDPQTLRMVAGALANLCGNEKLHTMLEEDGAIKALLAMVRSGNIDVIAQVARGLA 557 (660)
Q Consensus 488 e~g~I~~Ll~LL~~s~d~~v~~~Aa~aLanLa~~~~~r~~iv~~G~V~~Lv~lL~s~~~~v~~~Al~aLa 557 (660)
.++++.|+.++.+ +++.|+..|+++|.++.. .++++.|+.++.++++.|+..|+.+|+
T Consensus 72 -~~a~~~L~~~L~d-~~~~VR~~A~~aL~~~~~----------~~a~~~L~~~l~d~~~~vr~~A~~aL~ 129 (131)
T 1te4_A 72 -ERAVEPLIKLLED-DSGFVRSGAARSLEQIGG----------ERVRAAMEKLAETGTGFARKVAVNYLE 129 (131)
T ss_dssp -HHHHHHHHHHHHH-CCTHHHHHHHHHHHHHCS----------HHHHHHHHHHTTSCCTHHHHHHHHHGG
T ss_pred -HHHHHHHHHHHcC-CCHHHHHHHHHHHHHhCc----------HHHHHHHHHHHhCCCHHHHHHHHHHHH
Confidence 1134445555533 444555555555554431 134455555555555555555555443
No 59
>1w63_A Adapter-related protein complex 1 gamma 1 subunit; endocytosis, clathrin adaptor, transport, coated PITS; 4.0A {Mus musculus} SCOP: i.23.1.1
Probab=98.37 E-value=7.2e-06 Score=93.80 Aligned_cols=189 Identities=12% Similarity=0.067 Sum_probs=134.0
Q ss_pred HHHHHHhhCCCCHHHHHHHHHHHHHhhCCchhHHHHHHcCCHHHHHHHHccCCCHHHHHHHHHHHHHhhcC-chhHHHHH
Q 006114 409 LPKILQLLTSEDPDVQIHAVKVVANLAAEDINQEKIVEEGGLDALLLLLRTSQNTTILRVASGAIANLAMN-EMNQGLIM 487 (660)
Q Consensus 409 I~~LV~LL~s~d~~vr~~Aa~aL~nLa~~~en~~~Ive~GgI~~Lv~LL~~s~d~~v~~~Aa~AL~nLA~~-~~n~~~Iv 487 (660)
+..|..-|.++++.+|..|+++|+++.. ++ +. ...++.+..+|. ++++.|+..|+.+++.+... |+..
T Consensus 109 in~l~kDL~~~n~~vr~lAL~~L~~i~~-~~----~~-~~l~~~l~~~L~-~~~~~VRk~A~~al~~l~~~~p~~v---- 177 (618)
T 1w63_A 109 TNCIKNDLNHSTQFVQGLALCTLGCMGS-SE----MC-RDLAGEVEKLLK-TSNSYLRKKAALCAVHVIRKVPELM---- 177 (618)
T ss_dssp HHHHHHHHSCSSSHHHHHHHHHHHHHCC-HH----HH-HHHHHHHHHHHH-SCCHHHHHHHHHHHHHHHHHCGGGG----
T ss_pred HHHHHHhcCCCCHhHHHHHHHHHHhcCC-HH----HH-HHHHHHHHHHHc-CCCHHHHHHHHHHHHHHHHHChHHH----
Confidence 4556667789999999999999999984 22 22 235788889997 78999999999999999764 5422
Q ss_pred hcCccHHHHHhhcCCCCHHHHHHHHHHHHHHhcC-hhHHHHHHhccHHHHHHHHhcC---------------CCHHHHHH
Q 006114 488 SRGGGQLLAKTASKTDDPQTLRMVAGALANLCGN-EKLHTMLEEDGAIKALLAMVRS---------------GNIDVIAQ 551 (660)
Q Consensus 488 e~g~I~~Ll~LL~~s~d~~v~~~Aa~aLanLa~~-~~~r~~iv~~G~V~~Lv~lL~s---------------~~~~v~~~ 551 (660)
.+.++.+..++.+ .||.|+..|+++|..++.. ++....+. +.+|.++.+|.. ++|-.+..
T Consensus 178 -~~~~~~l~~lL~D-~d~~V~~~Al~~L~~i~~~~~~~~~~~~--~~v~~l~~~L~~~~~~~~~~~~~~~~~~~~~~q~~ 253 (618)
T 1w63_A 178 -EMFLPATKNLLNE-KNHGVLHTSVVLLTEMCERSPDMLAHFR--KLVPQLVRILKNLIMSGYSPEHDVSGISDPFLQVR 253 (618)
T ss_dssp -GGGGGGTTTSTTC-CCHHHHHHHHHHHHHHCCSHHHHHHHHH--TTHHHHHHHHHHHHHSCCCTTTCSSSSSCHHHHHH
T ss_pred -HHHHHHHHHHhCC-CCHhHHHHHHHHHHHHHHhChHHHHHHH--HHHHHHHHHHHHHHcCCCCccccccCCCCChHHHH
Confidence 2678888888865 8999999999999999854 33322222 567777776652 47888888
Q ss_pred HHHHHHHhhccchhhhhhcc--------------hhhhH-------HHhh--------cChHHHHHHhhcCCCHHHHHHH
Q 006114 552 VARGLANFAKCESRAIVQGQ--------------RKGRS-------HLME--------DSALEWLIANSKTNSASTRRHV 602 (660)
Q Consensus 552 Al~aLanLA~~~~~~~aq~~--------------~e~r~-------~Li~--------~G~v~~Lv~lL~s~d~~vr~~A 602 (660)
++.+|+.++..+++...... ..+.. .+.. ..+++.|..++.+.++.+|..|
T Consensus 254 il~~L~~l~~~~~~~~~~~~~~L~~l~~~~~~~~~~~~aV~~ea~~~i~~l~~~~~l~~~a~~~L~~~L~~~d~~vr~~a 333 (618)
T 1w63_A 254 ILRLLRILGRNDDDSSEAMNDILAQVATNTETSKNVGNAILYETVLTIMDIKSESGLRVLAINILGRFLLNNDKNIRYVA 333 (618)
T ss_dssp HHHHHHHHTTTCHHHHHTTHHHHHHHHHTSCCSSTHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHTCSSTTTHHHH
T ss_pred HHHHHHHhCCCCHHHHHHHHHHHHHHHhccccccchHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhCCCCchHHHH
Confidence 89999988876543210000 00000 1111 1356778888888888899888
Q ss_pred HHHHHHhhcC
Q 006114 603 ELALCHLAQN 612 (660)
Q Consensus 603 a~AL~nLa~~ 612 (660)
..+|..++..
T Consensus 334 L~~L~~i~~~ 343 (618)
T 1w63_A 334 LTSLLKTVQT 343 (618)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHhh
Confidence 8888888754
No 60
>1ibr_B P95, importin beta-1 subunit, nuclear factor; small GTPase, nuclear transport receptor, cell cycle, translation; HET: GNP; 2.30A {Homo sapiens} SCOP: a.118.1.1 PDB: 1m5n_S 1gcj_A 1f59_A 1o6o_A 1o6p_A
Probab=98.35 E-value=3e-06 Score=91.09 Aligned_cols=191 Identities=10% Similarity=0.068 Sum_probs=133.4
Q ss_pred HHHHHHhhCCCCHHHHHHHHHHHHHhhC-Cchh-HHHHHHcCCHHHHHHHHccCCCHHHHHHHHHHHHHhhcCchhH---
Q 006114 409 LPKILQLLTSEDPDVQIHAVKVVANLAA-EDIN-QEKIVEEGGLDALLLLLRTSQNTTILRVASGAIANLAMNEMNQ--- 483 (660)
Q Consensus 409 I~~LV~LL~s~d~~vr~~Aa~aL~nLa~-~~en-~~~Ive~GgI~~Lv~LL~~s~d~~v~~~Aa~AL~nLA~~~~n~--- 483 (660)
++.|..++.+++..++..++.+|..++. .+.. ...+ ..+.++.++..+. +.++.++..|+.++..++......
T Consensus 219 ~~~l~~~~~~~~~~vr~~~~~~l~~l~~~~~~~~~~~~-~~~l~~~~~~~~~-~~~~~v~~~a~~~l~~~~~~~~~~~~~ 296 (462)
T 1ibr_B 219 MQVVCEATQCPDTRVRVAALQNLVKIMSLYYQYMETYM-GPALFAITIEAMK-SDIDEVALQGIEFWSNVCDEEMDLAIE 296 (462)
T ss_dssp HHHHHHHTTCSSHHHHHHHHHHHHHHHHHCGGGCTTTT-TTTHHHHHHHHHH-CSSHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHc-CCchHHHHHHHHHHHHHHHHHHHHHHh
Confidence 5566677788899999999999999886 3321 1111 1144677777776 778999999999998887542100
Q ss_pred ---------------HHHHh---cCccHHHHHhhcCC------CCHHHHHHHHHHHHHHhcChhHHHHHHhccHHHHHHH
Q 006114 484 ---------------GLIMS---RGGGQLLAKTASKT------DDPQTLRMVAGALANLCGNEKLHTMLEEDGAIKALLA 539 (660)
Q Consensus 484 ---------------~~Ive---~g~I~~Ll~LL~~s------~d~~v~~~Aa~aLanLa~~~~~r~~iv~~G~V~~Lv~ 539 (660)
..++. ..++|.++..+.+. .+..++..|+.+|..++..-. ..+. ..+++.+..
T Consensus 297 ~~~~~~~~~~~~~~~~~~~~~~~~~l~p~l~~~l~~~d~d~~~~~~~~r~~a~~~L~~l~~~~~--~~~~-~~~~~~l~~ 373 (462)
T 1ibr_B 297 ASEAAEQGRPPEHTSKFYAKGALQYLVPILTQTLTKQDENDDDDDWNPCKAAGVCLMLLATCCE--DDIV-PHVLPFIKE 373 (462)
T ss_dssp HCCTTCSSSCSSCCCCCHHHHHHHHHHHHHHHHTTCCCSSCCTTCCSHHHHHHHHHHHHHHHTT--TTHH-HHHHHHHHH
T ss_pred cccccccCCCccchhHHHHHHHhhhccHHHHHHHHhcccccccccchHHHHHHHHHHHHHHhcc--HHHH-HHHHHHHHH
Confidence 00111 33566677766431 234688888899998873211 1222 357788888
Q ss_pred HhcCCCHHHHHHHHHHHHHhhccch-hhhhhcchhhhHHHhhcChHHHHHHhhcCCCHHHHHHHHHHHHHhhcCC
Q 006114 540 MVRSGNIDVIAQVARGLANFAKCES-RAIVQGQRKGRSHLMEDSALEWLIANSKTNSASTRRHVELALCHLAQNE 613 (660)
Q Consensus 540 lL~s~~~~v~~~Al~aLanLA~~~~-~~~aq~~~e~r~~Li~~G~v~~Lv~lL~s~d~~vr~~Aa~AL~nLa~~~ 613 (660)
++.+++..++..|+.+|+.++.+.. ... .. .-..++|.++.++.+.++.||..|+++|++++...
T Consensus 374 ~l~~~~~~~r~aal~~l~~l~~~~~~~~~-------~~--~l~~~~~~l~~~l~d~~~~Vr~~a~~~l~~~~~~~ 439 (462)
T 1ibr_B 374 HIKNPDWRYRDAAVMAFGCILEGPEPSQL-------KP--LVIQAMPTLIELMKDPSVVVRDTAAWTVGRICELL 439 (462)
T ss_dssp HTTCSSHHHHHHHHHHHHHTSSSSCTTTT-------CT--TTTTHHHHHHHGGGCSCHHHHHHHHHHHHHHHHHG
T ss_pred HhcCCChHHHHHHHHHHHHHhcCCcHHHH-------HH--HHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHhc
Confidence 8889999999999999999996432 111 11 12578999999999999999999999999998643
No 61
>1te4_A Conserved protein MTH187; methanobacterium thermoautotrophicum, structural proteomics, heat-like repeat; NMR {Methanothermobacterthermautotrophicus} SCOP: a.118.1.16
Probab=98.31 E-value=6.8e-07 Score=81.19 Aligned_cols=121 Identities=15% Similarity=0.167 Sum_probs=90.3
Q ss_pred ccchhhhhhcccCCCccccccchhhhhhcCchhHHHHHhCCCHHHHHHhhCCCCHHHHHHHHHHHHHhhCCchhHHHHHH
Q 006114 367 TKDYISKGSSRFGAPMSLQKSNPSRELSGQRATIAKICDEVGLPKILQLLTSEDPDVQIHAVKVVANLAAEDINQEKIVE 446 (660)
Q Consensus 367 ~~g~i~~l~~~L~~~~~~vr~~~~~~laa~~~~~~~I~e~ggI~~LV~LL~s~d~~vr~~Aa~aL~nLa~~~en~~~Ive 446 (660)
..+.+..+...|.+..+.+|..+...++... ...++.|+.+|.++++.+|..|+++|+++..
T Consensus 10 ~~~~~~~l~~~L~~~~~~vR~~A~~~L~~~~--------~~~~~~L~~~L~d~~~~vR~~A~~aL~~~~~---------- 71 (131)
T 1te4_A 10 HSSGLVPRGSHMADENKWVRRDVSTALSRMG--------DEAFEPLLESLSNEDWRIRGAAAWIIGNFQD---------- 71 (131)
T ss_dssp -----------CCSSCCCSSSSCCSSTTSCS--------STTHHHHHHGGGCSCHHHHHHHHHHHGGGCS----------
T ss_pred ccccHHHHHHHhcCCCHHHHHHHHHHHHHhC--------chHHHHHHHHHcCCCHHHHHHHHHHHHhcCC----------
Confidence 3456677888899999999988877755422 2347999999999999999999999988763
Q ss_pred cCCHHHHHHHHccCCCHHHHHHHHHHHHHhhcCchhHHHHHhcCccHHHHHhhcCCCCHHHHHHHHHHHHH
Q 006114 447 EGGLDALLLLLRTSQNTTILRVASGAIANLAMNEMNQGLIMSRGGGQLLAKTASKTDDPQTLRMVAGALAN 517 (660)
Q Consensus 447 ~GgI~~Lv~LL~~s~d~~v~~~Aa~AL~nLA~~~~n~~~Ive~g~I~~Ll~LL~~s~d~~v~~~Aa~aLan 517 (660)
.++++.|+.+|. ++++.|+..|+++|+.+.. .++++.|+.++.+ +++.|+..|+.+|..
T Consensus 72 ~~a~~~L~~~L~-d~~~~VR~~A~~aL~~~~~----------~~a~~~L~~~l~d-~~~~vr~~A~~aL~~ 130 (131)
T 1te4_A 72 ERAVEPLIKLLE-DDSGFVRSGAARSLEQIGG----------ERVRAAMEKLAET-GTGFARKVAVNYLET 130 (131)
T ss_dssp HHHHHHHHHHHH-HCCTHHHHHHHHHHHHHCS----------HHHHHHHHHHTTS-CCTHHHHHHHHHGGG
T ss_pred HHHHHHHHHHHc-CCCHHHHHHHHHHHHHhCc----------HHHHHHHHHHHhC-CCHHHHHHHHHHHHh
Confidence 235899999997 7899999999999998842 2468899999964 788999999988865
No 62
>2db0_A 253AA long hypothetical protein; heat repeats, helical structure, structural genomics; 2.20A {Pyrococcus horikoshii}
Probab=98.30 E-value=3.7e-05 Score=74.27 Aligned_cols=187 Identities=20% Similarity=0.190 Sum_probs=143.7
Q ss_pred HHHhCCCHHHHHHhhCCCCHHHHHHHHHHHHHhhC-CchhHHHHHHcCCHHHHHHHHccCCCHHHHHHHHHHHHHhhcC-
Q 006114 402 KICDEVGLPKILQLLTSEDPDVQIHAVKVVANLAA-EDINQEKIVEEGGLDALLLLLRTSQNTTILRVASGAIANLAMN- 479 (660)
Q Consensus 402 ~I~e~ggI~~LV~LL~s~d~~vr~~Aa~aL~nLa~-~~en~~~Ive~GgI~~Lv~LL~~s~d~~v~~~Aa~AL~nLA~~- 479 (660)
...+...+..++.+|..+-..|+.+|+.++.+++. -++..... +..|+-+++.+....+....+.+++.++..
T Consensus 27 a~~d~~~l~~lI~~LDDDlwtV~kNAl~vi~~i~~~~~el~epl-----~~kL~vm~~ksEaIpltqeIa~a~G~la~i~ 101 (253)
T 2db0_A 27 AKYDESVLKKLIELLDDDLWTVVKNAISIIMVIAKTREDLYEPM-----LKKLFSLLKKSEAIPLTQEIAKAFGQMAKEK 101 (253)
T ss_dssp HHHCHHHHHHHHHHTTCSCHHHHHHHHHHHHHHHTTCGGGHHHH-----HHHHHHHHHHCCSHHHHHHHHHHHHHHHHHC
T ss_pred HHhhHHHHHHHHHHhccHHHHHHHhHHHHHHHHHHHhHHHHHHH-----HHHHHHHHhhcccCchHHHHHHHHhHHHHhC
Confidence 34455678999999999999999999999999998 56555433 556777777777777766778888888754
Q ss_pred chhHHHHHhcCccHHHHHhhcCCCCHHHHHHHHHHHHHHh-cChhHHHHHHhccHHHHHHHHhcCCCHHHHHHHHHHHHH
Q 006114 480 EMNQGLIMSRGGGQLLAKTASKTDDPQTLRMVAGALANLC-GNEKLHTMLEEDGAIKALLAMVRSGNIDVIAQVARGLAN 558 (660)
Q Consensus 480 ~~n~~~Ive~g~I~~Ll~LL~~s~d~~v~~~Aa~aLanLa-~~~~~r~~iv~~G~V~~Lv~lL~s~~~~v~~~Al~aLan 558 (660)
|+.-. +.+|.+..-.. -++|.++.+...+|..++ .+|.... +++.-+..++.++|..=+..|+..|+.
T Consensus 102 Pe~v~-----~vVp~lfanyr-igd~kikIn~~yaLeeIaranP~l~~-----~v~rdi~smltskd~~Dkl~aLnFi~a 170 (253)
T 2db0_A 102 PELVK-----SMIPVLFANYR-IGDEKTKINVSYALEEIAKANPMLMA-----SIVRDFMSMLSSKNREDKLTALNFIEA 170 (253)
T ss_dssp HHHHH-----HHHHHHHHHSC-CCSHHHHHHHHHHHHHHHHHCHHHHH-----HHHHHHHHHTSCSSHHHHHHHHHHHHT
T ss_pred HHHHH-----hhHHHHHHHHh-cCCccceecHHHHHHHHHHhChHHHH-----HHHHHHHHHhcCCChHHHHHHHHHHHH
Confidence 55222 24555555554 479999999999999998 7777655 455678899999998888888888888
Q ss_pred hhccchhhhhhcchhhhHHHhhcChHHHHHHhhcCCCHHHHHHHHHHHHHhhcCCccHH
Q 006114 559 FAKCESRAIVQGQRKGRSHLMEDSALEWLIANSKTNSASTRRHVELALCHLAQNEDNAR 617 (660)
Q Consensus 559 LA~~~~~~~aq~~~e~r~~Li~~G~v~~Lv~lL~s~d~~vr~~Aa~AL~nLa~~~e~~~ 617 (660)
+....++..+ -.+|.|..+|.+.|.-||.-|..+|.+++.-++...
T Consensus 171 lGen~~~yv~-------------PfLprL~aLL~D~deiVRaSaVEtL~~lA~~npklR 216 (253)
T 2db0_A 171 MGENSFKYVN-------------PFLPRIINLLHDGDEIVRASAVEALVHLATLNDKLR 216 (253)
T ss_dssp CCTTTHHHHG-------------GGHHHHHGGGGCSSHHHHHHHHHHHHHHHTSCHHHH
T ss_pred HhccCccccC-------------cchHHHHHHHcCcchhhhHHHHHHHHHHHHcCHHHH
Confidence 7766544332 368999999999999999999999999998664333
No 63
>1ho8_A Vacuolar ATP synthase subunit H; heat repeat, hydrolase; 2.95A {Saccharomyces cerevisiae} SCOP: a.118.1.9
Probab=98.29 E-value=1.5e-05 Score=87.75 Aligned_cols=193 Identities=12% Similarity=0.109 Sum_probs=140.5
Q ss_pred HHHHhhCC-CCHHHHHHHHHHHHHhhCCchhHHHHHHcCC--HHHHHHHHcc----------------CCCHHHHHHHHH
Q 006114 411 KILQLLTS-EDPDVQIHAVKVVANLAAEDINQEKIVEEGG--LDALLLLLRT----------------SQNTTILRVASG 471 (660)
Q Consensus 411 ~LV~LL~s-~d~~vr~~Aa~aL~nLa~~~en~~~Ive~Gg--I~~Lv~LL~~----------------s~d~~v~~~Aa~ 471 (660)
.++..|.. ++...+..++.+|..|...++.|..+...+| +|+++.++.. +....++..++-
T Consensus 171 ~~~~~L~~~~~~~~~~i~v~~L~~Ll~~~~~R~~f~~~~~~~~~~l~~il~~~~~~~~~~~~~~~~~~~~~~Ql~Y~~ll 250 (480)
T 1ho8_A 171 NLINILQNIEQMDTCYVCIRLLQELAVIPEYRDVIWLHEKKFMPTLFKILQRATDSQLATRIVATNSNHLGIQLQYHSLL 250 (480)
T ss_dssp HHHHHHHCTTCHHHHHHHHHHHHHHHTSHHHHHHHHTTHHHHHHHHHHHHHHHHC-------------CCHHHHHHHHHH
T ss_pred HHHHHhccccCCchHHHHHHHHHHHhcchhHHHHHHHcccchhHHHHHHHHHhhccccccccccccCCCccHHHHHHHHH
Confidence 45666665 3566677899999999999999999987655 7777655431 113567889999
Q ss_pred HHHHhhcCchhHHHHHhcCcc--HHHHHhhcCCCCHHHHHHHHHHHHHHhcCh-----hHHH-HHHhccHHH--------
Q 006114 472 AIANLAMNEMNQGLIMSRGGG--QLLAKTASKTDDPQTLRMVAGALANLCGNE-----KLHT-MLEEDGAIK-------- 535 (660)
Q Consensus 472 AL~nLA~~~~n~~~Ive~g~I--~~Ll~LL~~s~d~~v~~~Aa~aLanLa~~~-----~~r~-~iv~~G~V~-------- 535 (660)
|+|-|+.+++....+...+++ +.|+.+++.+.-..+.+.+..+|.|+...+ .... .++-.++++
T Consensus 251 ~iWlLSF~~~~~~~l~~~~i~~~~~L~~i~k~s~KEKvvRv~la~l~Nll~~~~~~~~~~~~~~~~~~~~l~~l~~L~~r 330 (480)
T 1ho8_A 251 LIWLLTFNPVFANELVQKYLSDFLDLLKLVKITIKEKVSRLCISIILQCCSTRVKQHKKVIKQLLLLGNALPTVQSLSER 330 (480)
T ss_dssp HHHHHTTSHHHHHHHHTTSHHHHHHHHHHHHHCCSHHHHHHHHHHHHHTTSSSSTTHHHHHHHHHHHHCHHHHHHHHHSS
T ss_pred HHHHHHcCHHHHHHHHhcchHHHHHHHHHHHhhccchhHHHHHHHHHHHhcccchhhhhHHHHHHHHccchHHHHHHhhC
Confidence 999999998888888877754 667777877777889999999999987433 1112 232233333
Q ss_pred --------------------------------------------------------------------HHHHHhcC----
Q 006114 536 --------------------------------------------------------------------ALLAMVRS---- 543 (660)
Q Consensus 536 --------------------------------------------------------------------~Lv~lL~s---- 543 (660)
.|+.++.+
T Consensus 331 k~~Dedl~edl~~L~e~L~~~~~~ltsfDeY~~El~sG~L~WSP~H~se~FW~ENa~kf~e~~~~llk~L~~iL~~~~~~ 410 (480)
T 1ho8_A 331 KYSDEELRQDISNLKEILENEYQELTSFDEYVAELDSKLLCWSPPHVDNGFWSDNIDEFKKDNYKIFRQLIELLQAKVRN 410 (480)
T ss_dssp CCSSHHHHHHHHHHHHHHHHHHHTCCHHHHHHHHHHHTCCCCCGGGGCHHHHHHHSGGGSSGGGHHHHHHHHHHHHHHHT
T ss_pred CCCcHHHHHHHHHHHHHHHHHHHhcccHHHHHHHHhcCCcccCCCccchhHHHHHHHHHHhcchHHHHHHHHHHhhhccc
Confidence 23334431
Q ss_pred ------CCHHHHHHHHHHHHHhhccchhhhhhcchhhhHHHhhcChHHHHHHhhcCCCHHHHHHHHHHHHHhhc
Q 006114 544 ------GNIDVIAQVARGLANFAKCESRAIVQGQRKGRSHLMEDSALEWLIANSKTNSASTRRHVELALCHLAQ 611 (660)
Q Consensus 544 ------~~~~v~~~Al~aLanLA~~~~~~~aq~~~e~r~~Li~~G~v~~Lv~lL~s~d~~vr~~Aa~AL~nLa~ 611 (660)
.+|.+..-||.-||.++.. +|.||..+.+.|+=..++.++.++|+.||.+|..|+..+-.
T Consensus 411 ~~~~~s~d~~~laVAc~Digefvr~--------~P~gr~i~~~lg~K~~VM~Lm~h~d~~Vr~~AL~avQklm~ 476 (480)
T 1ho8_A 411 GDVNAKQEKIIIQVALNDITHVVEL--------LPESIDVLDKTGGKADIMELLNHSDSRVKYEALKATQAIIG 476 (480)
T ss_dssp TCCCSHHHHHHHHHHHHHHHHHHHH--------CTTHHHHHHHHSHHHHHHHHTSCSSHHHHHHHHHHHHHHHH
T ss_pred cccccCCCcceEEeecccHHHHHHH--------CcchhHHHHHcCcHHHHHHHhcCCCHHHHHHHHHHHHHHHH
Confidence 2455566666666666654 57788888889999999999999999999999999987643
No 64
>3b2a_A TON_1937, putative uncharacterized protein; heat-repeats, hypothetical, unknown function; 2.20A {Thermococcus onnurineus}
Probab=98.29 E-value=3.6e-05 Score=77.04 Aligned_cols=219 Identities=15% Similarity=0.047 Sum_probs=157.0
Q ss_pred CCHHHHHHhhCCCCHHHHHHHHHHHHHhhCC--chhHHHHHHcCCHHHHHHHHccCCCHHHHHHHHHHHHHhhcC-chhH
Q 006114 407 VGLPKILQLLTSEDPDVQIHAVKVVANLAAE--DINQEKIVEEGGLDALLLLLRTSQNTTILRVASGAIANLAMN-EMNQ 483 (660)
Q Consensus 407 ggI~~LV~LL~s~d~~vr~~Aa~aL~nLa~~--~en~~~Ive~GgI~~Lv~LL~~s~d~~v~~~Aa~AL~nLA~~-~~n~ 483 (660)
+.+..|+.+|...|+.++.+|+.+|..+... ...+..+++. .+|.++.++. +.|..+...|..||..|-.+ |-.-
T Consensus 33 ~~l~~L~~LL~dkD~~vk~raL~~LeellK~~~~~l~~~~~e~-~Ld~iI~llk-~~dEkval~A~r~L~~LLe~vpL~~ 110 (265)
T 3b2a_A 33 RALFLILELAGEDDETTRLRAFVALGEILKRADSDLRMMVLER-HLDVFINALS-QENEKVTIKALRALGYLVKDVPMGS 110 (265)
T ss_dssp HHHHHHHHHTTSSCHHHHHHHHHHHHHHHHHSCHHHHHHHHHH-HHHHHHHTCC-STTHHHHHHHHHHHHHHHTTCCBCH
T ss_pred hHHHHHHHHHhccchHHHHHHHHHHHHHHHhccccccHHHHHH-HHHHHHHHHh-ccchhHHHHHHHHHHHHHcCCCCCH
Confidence 4678888999999999999999999998874 4445555554 7999999997 88999999999999999876 4444
Q ss_pred HHHHhcCccHHHHHhhcCCCCHHHHHHHHHHHHHHhcChhHHHHHHhccHHHHHHHHhcCCCHHHHHHHHHHHHHhhccc
Q 006114 484 GLIMSRGGGQLLAKTASKTDDPQTLRMVAGALANLCGNEKLHTMLEEDGAIKALLAMVRSGNIDVIAQVARGLANFAKCE 563 (660)
Q Consensus 484 ~~Ive~g~I~~Ll~LL~~s~d~~v~~~Aa~aLanLa~~~~~r~~iv~~G~V~~Lv~lL~s~~~~v~~~Al~aLanLA~~~ 563 (660)
..+.. ++.+|..++. .+++-.+..|+..+.-+.... ...+++..+..++.|.++.++..|+.++.+++..+
T Consensus 111 ~~y~K--l~~aL~dlik-~~~~il~~eaae~Lgklkv~~------~~~~V~~~l~sLl~Skd~~vK~agl~~L~eia~~S 181 (265)
T 3b2a_A 111 KTFLK--AAKTLVSLLE-SPDDMMRIETIDVLSKLQPLE------DSKLVRTYINELVVSPDLYTKVAGFCLFLNMLNSS 181 (265)
T ss_dssp HHHHH--HHHHHHHHTT-SCCHHHHHHHHHHHHHCCBSC------CCHHHHHHHHHHHTCSSHHHHHHHHHHHHHHGGGC
T ss_pred HHHHH--HHHHHHHHhc-CCCchHHHHHHHHhCcCCccc------chHHHHHHHHHHHhCCChhHHHHHHHHHHHhhccc
Confidence 44433 3467888887 588889999999888874211 11256788999999999999999999999999654
Q ss_pred hhhhhhcchhhhHHHhhcChHHHHHHhhcCCCHHHHHHHHHHHHHhhcCCccHHHHHhcCcHHHHH-HHHhcCChHHHHH
Q 006114 564 SRAIVQGQRKGRSHLMEDSALEWLIANSKTNSASTRRHVELALCHLAQNEDNARDFISRGGAKELV-QISIESSREDIRN 642 (660)
Q Consensus 564 ~~~~aq~~~e~r~~Li~~G~v~~Lv~lL~s~d~~vr~~Aa~AL~nLa~~~e~~~~Ive~G~l~~Lv-~lL~s~s~~~ir~ 642 (660)
.+. =+-.+++.-+-.++++.|+.++..|..+|..+...+-.-..+...-++-..+ ++..-...+.++.
T Consensus 182 ~D~-----------~i~~~I~~eI~elL~~eD~~l~e~aLd~Le~ils~pi~~~~~~~~~~~~~~v~~l~~~~~~~~~~~ 250 (265)
T 3b2a_A 182 ADS-----------GHLTLILDEIPSLLQNDNEFIVELALDVLEKALSFPLLENVKIELLKISRIVDGLVYREGAPIIRL 250 (265)
T ss_dssp SSC-----------CCGGGTTTTHHHHHTCSCHHHHHHHHHHHHHHTTSCCCSCCHHHHHHHHHHHHHGGGCSSCHHHHH
T ss_pred CCH-----------HHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHcCcccHhHHHHHHHHHHHHHHHHHhcCChhHHH
Confidence 210 0112345556677899999999999999999988762211111111222222 2222345566777
Q ss_pred HHHHH
Q 006114 643 LAKKT 647 (660)
Q Consensus 643 ~A~~~ 647 (660)
+|+.+
T Consensus 251 ka~~v 255 (265)
T 3b2a_A 251 KAKKV 255 (265)
T ss_dssp HHHHH
T ss_pred HHHHH
Confidence 77744
No 65
>1qgr_A Protein (importin beta subunit); transport receptor, nuclear import, heat motif, NLS-binding; 2.30A {Homo sapiens} SCOP: a.118.1.1 PDB: 1qgk_A 2p8q_A 2q5d_A 3lww_A 1ukl_A 2qna_A
Probab=98.22 E-value=1.5e-05 Score=93.06 Aligned_cols=225 Identities=10% Similarity=0.030 Sum_probs=149.9
Q ss_pred CHHHHHHhhCCCCHHHHHHHHHHHHHhhC-CchhHHHHHHcCCHHHHHHHHccCCCHHHHHHHHHHHHHhhcCchh----
Q 006114 408 GLPKILQLLTSEDPDVQIHAVKVVANLAA-EDINQEKIVEEGGLDALLLLLRTSQNTTILRVASGAIANLAMNEMN---- 482 (660)
Q Consensus 408 gI~~LV~LL~s~d~~vr~~Aa~aL~nLa~-~~en~~~Ive~GgI~~Lv~LL~~s~d~~v~~~Aa~AL~nLA~~~~n---- 482 (660)
.++.+..++.+++..++..|+.+|..++. .+..-...+..+.++.++..+. +.++.++..|+.++.+++.....
T Consensus 218 il~~l~~~~~~~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~~l~~~~~~~~~-~~~~~v~~~al~~l~~l~~~~~~~~~~ 296 (876)
T 1qgr_A 218 IMQVVCEATQCPDTRVRVAALQNLVKIMSLYYQYMETYMGPALFAITIEAMK-SDIDEVALQGIEFWSNVCDEEMDLAIE 296 (876)
T ss_dssp HHHHHHHHTTCSSHHHHHHHHHHHHHHHHHSGGGCHHHHTTTHHHHHHHHHT-CSSHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHcCCCCHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHhc-CCchHHHHHHHHHHHHHHHHHHhHhhh
Confidence 46666777788899999999999999887 4433222222345777888776 67889999999999888754210
Q ss_pred ---------------HHHH--HhcCccHHHHHhhcC------CCCHHHHHHHHHHHHHHhcChhHHHHHHhccHHHHHHH
Q 006114 483 ---------------QGLI--MSRGGGQLLAKTASK------TDDPQTLRMVAGALANLCGNEKLHTMLEEDGAIKALLA 539 (660)
Q Consensus 483 ---------------~~~I--ve~g~I~~Ll~LL~~------s~d~~v~~~Aa~aLanLa~~~~~r~~iv~~G~V~~Lv~ 539 (660)
...+ .-...+|.++..+.. ..+..++..|+.+|..++..-. ..++ ..+++.+..
T Consensus 297 ~~~~~~~~~~~~~~~~~~~~~~~~~ll~~ll~~l~~~~~d~~~~~~~~r~~a~~~l~~l~~~~~--~~~~-~~~l~~l~~ 373 (876)
T 1qgr_A 297 ASEAAEQGRPPEHTSKFYAKGALQYLVPILTQTLTKQDENDDDDDWNPCKAAGVCLMLLATCCE--DDIV-PHVLPFIKE 373 (876)
T ss_dssp HHHHHHHSSCCSSCCCCHHHHHHHHHHHHHHHHTTCCCSSCCTTCCCHHHHHHHHHHHHHHHHG--GGGH-HHHHHHHHH
T ss_pred hccccccCCCccchhHHHHHHHHHHHhHHHHHHhhcccccccccccHHHHHHHHHHHHHHHHCc--HhhH-HHHHHHHHH
Confidence 0000 013356677777742 1245688888888888873211 1122 256677777
Q ss_pred HhcCCCHHHHHHHHHHHHHhhccch-hhhhhcchhhhHHHhhcChHHHHHHhhcCCCHHHHHHHHHHHHHhhcCCccH--
Q 006114 540 MVRSGNIDVIAQVARGLANFAKCES-RAIVQGQRKGRSHLMEDSALEWLIANSKTNSASTRRHVELALCHLAQNEDNA-- 616 (660)
Q Consensus 540 lL~s~~~~v~~~Al~aLanLA~~~~-~~~aq~~~e~r~~Li~~G~v~~Lv~lL~s~d~~vr~~Aa~AL~nLa~~~e~~-- 616 (660)
.+.++++.++..|+.+|+.++...+ ... .. .-.+.+|.++..+.+.++.||..|+++|.+++.+....
T Consensus 374 ~l~~~~~~~r~~a~~~l~~i~~~~~~~~~-------~~--~~~~~l~~l~~~l~d~~~~vr~~a~~~l~~~~~~~~~~~~ 444 (876)
T 1qgr_A 374 HIKNPDWRYRDAAVMAFGCILEGPEPSQL-------KP--LVIQAMPTLIELMKDPSVVVRDTAAWTVGRICELLPEAAI 444 (876)
T ss_dssp HTTCSSHHHHHHHHHHHHHTSSSSCHHHH-------HH--HHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHCGGGTS
T ss_pred HccCCChHHHHHHHHHHHHHHcCCCHHHH-------HH--HHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHhCchhcc
Confidence 8888999999999999999996532 111 11 12457899999999999999999999999998753210
Q ss_pred -HHHHhcCcHHHHHHHHhcCChHHHHHHHHHHH
Q 006114 617 -RDFISRGGAKELVQISIESSREDIRNLAKKTM 648 (660)
Q Consensus 617 -~~Ive~G~l~~Lv~lL~s~s~~~ir~~A~~~L 648 (660)
... -..+++.|+..+.+. +.++..|..+|
T Consensus 445 ~~~~-l~~~l~~l~~~l~~~--~~v~~~a~~al 474 (876)
T 1qgr_A 445 NDVY-LAPLLQCLIEGLSAE--PRVASNVCWAF 474 (876)
T ss_dssp STTT-HHHHHHHHHHHTTSC--HHHHHHHHHHH
T ss_pred cHHH-HHHHHHHHHHHHcCC--HHHHHHHHHHH
Confidence 111 124677888888663 44555555444
No 66
>2bpt_A Importin beta-1 subunit; nuclear transport, nucleocytoplasmic transport, nuclear trafficking, importin- beta, complex; 1.99A {Saccharomyces cerevisiae} SCOP: a.118.1.1 PDB: 2bku_B 3ea5_B* 3nd2_A
Probab=98.21 E-value=1.8e-05 Score=92.10 Aligned_cols=227 Identities=12% Similarity=0.126 Sum_probs=147.5
Q ss_pred CCHHHHHHhhCCCCHHHHHHHHHHHHHhhCCchh------------------HHHHHHcCCHHHHHHHHccC------CC
Q 006114 407 VGLPKILQLLTSEDPDVQIHAVKVVANLAAEDIN------------------QEKIVEEGGLDALLLLLRTS------QN 462 (660)
Q Consensus 407 ggI~~LV~LL~s~d~~vr~~Aa~aL~nLa~~~en------------------~~~Ive~GgI~~Lv~LL~~s------~d 462 (660)
..++.++..+.+.+..++..|+.++..++..... ...++ ...+|.|+..+... .+
T Consensus 266 ~l~~~~~~~~~~~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~il~~ll~~l~~~~~d~~d~~ 344 (861)
T 2bpt_A 266 ALYALTIATMKSPNDKVASMTVEFWSTICEEEIDIAYELAQFPQSPLQSYNFALSSI-KDVVPNLLNLLTRQNEDPEDDD 344 (861)
T ss_dssp THHHHHHHHTTCSSHHHHHHHHHHHHHHHHHHHHHHHHHHHCTTCSCCCCCHHHHHH-HHHHHHHHHHTTCCCCC-CCCC
T ss_pred HHHHHHHHHHcCCcHHHHHHHHHHHHHHHHHHHhhhhhhhhccCCchhhHHHHHHHH-HHHHHHHHHHHHhccccccccc
Confidence 3455566777888999999999999888764211 11111 23578888888632 23
Q ss_pred HHHHHHHHHHHHHhhcCchhHHHHHhcCccHHHHHhhcCCCCHHHHHHHHHHHHHHhcCh--hHHHHHHhccHHHHHHHH
Q 006114 463 TTILRVASGAIANLAMNEMNQGLIMSRGGGQLLAKTASKTDDPQTLRMVAGALANLCGNE--KLHTMLEEDGAIKALLAM 540 (660)
Q Consensus 463 ~~v~~~Aa~AL~nLA~~~~n~~~Ive~g~I~~Ll~LL~~s~d~~v~~~Aa~aLanLa~~~--~~r~~iv~~G~V~~Lv~l 540 (660)
..++..|+.+|..++..-. ..++ ...++.+...+.+ .++.++..|+++|+.++... ..-...+ ..+++.|+..
T Consensus 345 ~~~r~~a~~~L~~l~~~~~--~~~~-~~l~~~l~~~l~~-~~~~~r~~a~~~l~~i~~~~~~~~~~~~l-~~il~~l~~~ 419 (861)
T 2bpt_A 345 WNVSMSAGACLQLFAQNCG--NHIL-EPVLEFVEQNITA-DNWRNREAAVMAFGSIMDGPDKVQRTYYV-HQALPSILNL 419 (861)
T ss_dssp CHHHHHHHHHHHHHHHHHG--GGGH-HHHHHHHHHHTTC-SSHHHHHHHHHHHHHTSSSSCHHHHHHHH-HHHHHHHHHG
T ss_pred CcHHHHHHHHHHHHHHHcc--HhHH-HHHHHHHHHHcCC-CChhHHHHHHHHHHHHHcCCCHHHHHHHH-HHHHHHHHHH
Confidence 4788889999998876411 1111 2345666666654 67899999999999999542 2222222 2578889999
Q ss_pred hcCCCHHHHHHHHHHHHHhhccchhhhhhcchhhhHHHhhcChHHHHHHhhcCCCHHHHHHHHHHHHHhhcCC-----cc
Q 006114 541 VRSGNIDVIAQVARGLANFAKCESRAIVQGQRKGRSHLMEDSALEWLIANSKTNSASTRRHVELALCHLAQNE-----DN 615 (660)
Q Consensus 541 L~s~~~~v~~~Al~aLanLA~~~~~~~aq~~~e~r~~Li~~G~v~~Lv~lL~s~d~~vr~~Aa~AL~nLa~~~-----e~ 615 (660)
+.++++.++..++++|+.++..-+... ...-.-..+++.++..+.+. +.++..|+++|.+++... ..
T Consensus 420 l~d~~~~vr~~a~~~l~~l~~~~~~~~-------~~~~~~~~~l~~l~~~l~~~-~~v~~~a~~al~~l~~~~~~~~~~~ 491 (861)
T 2bpt_A 420 MNDQSLQVKETTAWCIGRIADSVAESI-------DPQQHLPGVVQACLIGLQDH-PKVATNCSWTIINLVEQLAEATPSP 491 (861)
T ss_dssp GGCSCHHHHHHHHHHHHHHHHHHGGGS-------CTTTTHHHHHHHHHHHHTSC-HHHHHHHHHHHHHHHHHHSSSSSCG
T ss_pred cCCCcHHHHHHHHHHHHHHHHHhhhhc-------CCHHHHHHHHHHHHHHhccC-hHHHHHHHHHHHHHHHhcccccchh
Confidence 999999999999999999985421000 00001235678888888765 899999999999987531 11
Q ss_pred HHHHHhcCcHHHHHHHHhcCCh-HHHHHHHHHHH
Q 006114 616 ARDFISRGGAKELVQISIESSR-EDIRNLAKKTM 648 (660)
Q Consensus 616 ~~~Ive~G~l~~Lv~lL~s~s~-~~ir~~A~~~L 648 (660)
..... ..+++.|+.++.+.+. ..+|..|..++
T Consensus 492 l~~~~-~~il~~L~~~l~~~d~~~~vr~~a~~al 524 (861)
T 2bpt_A 492 IYNFY-PALVDGLIGAANRIDNEFNARASAFSAL 524 (861)
T ss_dssp GGGGH-HHHHHHHHHHHTCSCCGGGHHHHHHHHH
T ss_pred hHHHH-HHHHHHHHHHHhCcCcchHHHHHHHHHH
Confidence 11111 3457888888875443 34565555444
No 67
>2bpt_A Importin beta-1 subunit; nuclear transport, nucleocytoplasmic transport, nuclear trafficking, importin- beta, complex; 1.99A {Saccharomyces cerevisiae} SCOP: a.118.1.1 PDB: 2bku_B 3ea5_B* 3nd2_A
Probab=98.16 E-value=3.7e-05 Score=89.49 Aligned_cols=223 Identities=9% Similarity=0.048 Sum_probs=146.6
Q ss_pred CHHHHHHhhCCCCHHHHHHHHHHHHHhhC-Cch-hHHHHHHcCCHHHHHHHHccCCCHHHHHHHHHHHHHhhcCchh---
Q 006114 408 GLPKILQLLTSEDPDVQIHAVKVVANLAA-EDI-NQEKIVEEGGLDALLLLLRTSQNTTILRVASGAIANLAMNEMN--- 482 (660)
Q Consensus 408 gI~~LV~LL~s~d~~vr~~Aa~aL~nLa~-~~e-n~~~Ive~GgI~~Lv~LL~~s~d~~v~~~Aa~AL~nLA~~~~n--- 482 (660)
.++.|..++.+++..+|..|+.+|..++. .+. ....+. ...++.++..+. +.++.++..|+.++..++.....
T Consensus 225 ll~~l~~~~~~~~~~~r~~a~~~l~~l~~~~~~~~~~~l~-~~l~~~~~~~~~-~~~~~vr~~a~~~l~~l~~~~~~~~~ 302 (861)
T 2bpt_A 225 LMQVVCEATQAEDIEVQAAAFGCLCKIMSKYYTFMKPYME-QALYALTIATMK-SPNDKVASMTVEFWSTICEEEIDIAY 302 (861)
T ss_dssp HHHHHHHHHTCSCHHHHHHHHHHHHHHHHHHGGGCHHHHH-HTHHHHHHHHTT-CSSHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHc-CCcHHHHHHHHHHHHHHHHHHHhhhh
Confidence 35666677788999999999999999887 332 222222 134666667776 67899999999999988765211
Q ss_pred ---------------HHHHHhcCccHHHHHhhcCC------CCHHHHHHHHHHHHHHhcChhHHHHHHhccHHHHHHHHh
Q 006114 483 ---------------QGLIMSRGGGQLLAKTASKT------DDPQTLRMVAGALANLCGNEKLHTMLEEDGAIKALLAMV 541 (660)
Q Consensus 483 ---------------~~~Ive~g~I~~Ll~LL~~s------~d~~v~~~Aa~aLanLa~~~~~r~~iv~~G~V~~Lv~lL 541 (660)
...++ ..++|.++..+... .++.++..|+.+|..++..-. ..++ ...++.+...+
T Consensus 303 ~~~~~~~~~~~~~~~~~~~~-~~il~~ll~~l~~~~~d~~d~~~~~r~~a~~~L~~l~~~~~--~~~~-~~l~~~l~~~l 378 (861)
T 2bpt_A 303 ELAQFPQSPLQSYNFALSSI-KDVVPNLLNLLTRQNEDPEDDDWNVSMSAGACLQLFAQNCG--NHIL-EPVLEFVEQNI 378 (861)
T ss_dssp HHHHCTTCSCCCCCHHHHHH-HHHHHHHHHHTTCCCCC-CCCCCHHHHHHHHHHHHHHHHHG--GGGH-HHHHHHHHHHT
T ss_pred hhhhccCCchhhHHHHHHHH-HHHHHHHHHHHHhcccccccccCcHHHHHHHHHHHHHHHcc--HhHH-HHHHHHHHHHc
Confidence 11111 44678888877642 235788888899988873211 0111 24566677777
Q ss_pred cCCCHHHHHHHHHHHHHhhccch-hhhhhcchhhhHHHhhcChHHHHHHhhcCCCHHHHHHHHHHHHHhhcCCccH---H
Q 006114 542 RSGNIDVIAQVARGLANFAKCES-RAIVQGQRKGRSHLMEDSALEWLIANSKTNSASTRRHVELALCHLAQNEDNA---R 617 (660)
Q Consensus 542 ~s~~~~v~~~Al~aLanLA~~~~-~~~aq~~~e~r~~Li~~G~v~~Lv~lL~s~d~~vr~~Aa~AL~nLa~~~e~~---~ 617 (660)
.+.+..++..|+.+|+.++.... ... ...+ ...++.|+..+.+.++.+|..++++|+.++..-... .
T Consensus 379 ~~~~~~~r~~a~~~l~~i~~~~~~~~~-------~~~l--~~il~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~~~~~~ 449 (861)
T 2bpt_A 379 TADNWRNREAAVMAFGSIMDGPDKVQR-------TYYV--HQALPSILNLMNDQSLQVKETTAWCIGRIADSVAESIDPQ 449 (861)
T ss_dssp TCSSHHHHHHHHHHHHHTSSSSCHHHH-------HHHH--HHHHHHHHHGGGCSCHHHHHHHHHHHHHHHHHHGGGSCTT
T ss_pred CCCChhHHHHHHHHHHHHHcCCCHHHH-------HHHH--HHHHHHHHHHcCCCcHHHHHHHHHHHHHHHHHhhhhcCCH
Confidence 88899999999999999996431 111 1111 357888999999999999999999999998542110 0
Q ss_pred HHHhcCcHHHHHHHHhcCChHHHHHHHHHHH
Q 006114 618 DFISRGGAKELVQISIESSREDIRNLAKKTM 648 (660)
Q Consensus 618 ~Ive~G~l~~Lv~lL~s~s~~~ir~~A~~~L 648 (660)
. .-..+++.|+..+.+. +..+..|..+|
T Consensus 450 ~-~~~~~l~~l~~~l~~~--~~v~~~a~~al 477 (861)
T 2bpt_A 450 Q-HLPGVVQACLIGLQDH--PKVATNCSWTI 477 (861)
T ss_dssp T-THHHHHHHHHHHHTSC--HHHHHHHHHHH
T ss_pred H-HHHHHHHHHHHHhccC--hHHHHHHHHHH
Confidence 0 1123567777777653 44554444433
No 68
>1qgr_A Protein (importin beta subunit); transport receptor, nuclear import, heat motif, NLS-binding; 2.30A {Homo sapiens} SCOP: a.118.1.1 PDB: 1qgk_A 2p8q_A 2q5d_A 3lww_A 1ukl_A 2qna_A
Probab=98.14 E-value=6.2e-05 Score=87.80 Aligned_cols=225 Identities=12% Similarity=0.080 Sum_probs=147.9
Q ss_pred CHHHHHHhhCCC--CHHHHHHHHHHHHHhhCC-chhH-HHHHHcCCHHHHHHHHccCCCHHHHHHHHHHHHHhhcC-chh
Q 006114 408 GLPKILQLLTSE--DPDVQIHAVKVVANLAAE-DINQ-EKIVEEGGLDALLLLLRTSQNTTILRVASGAIANLAMN-EMN 482 (660)
Q Consensus 408 gI~~LV~LL~s~--d~~vr~~Aa~aL~nLa~~-~en~-~~Ive~GgI~~Lv~LL~~s~d~~v~~~Aa~AL~nLA~~-~~n 482 (660)
.++.++..+.++ +..+|..|+.+|.+++.. ..+- ........++.+..++. +.++.++..|+.+|..++.. +..
T Consensus 173 ll~~l~~~l~~~~~~~~vr~~a~~~l~~~~~~~~~~~~~~~~~~~il~~l~~~~~-~~~~~vr~~a~~~l~~l~~~~~~~ 251 (876)
T 1qgr_A 173 ILTAIIQGMRKEEPSNNVKLAATNALLNSLEFTKANFDKESERHFIMQVVCEATQ-CPDTRVRVAALQNLVKIMSLYYQY 251 (876)
T ss_dssp HHHHHHHHHSTTCSCHHHHHHHHHHHHHHGGGCHHHHTSHHHHHHHHHHHHHHTT-CSSHHHHHHHHHHHHHHHHHSGGG
T ss_pred HHHHHHHhhcCCCCCHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHHHHHHhHHH
Confidence 356667777766 689999999999998752 2111 00111124666666665 77899999999999999864 433
Q ss_pred HHHHHhcCccHHHHHhhcCCCCHHHHHHHHHHHHHHhcChhH-----H--------------HHH--HhccHHHHHHHHh
Q 006114 483 QGLIMSRGGGQLLAKTASKTDDPQTLRMVAGALANLCGNEKL-----H--------------TML--EEDGAIKALLAMV 541 (660)
Q Consensus 483 ~~~Ive~g~I~~Ll~LL~~s~d~~v~~~Aa~aLanLa~~~~~-----r--------------~~i--v~~G~V~~Lv~lL 541 (660)
-...+..++++.++..+.+ .++.++..|+.++.+++..... . ..+ .-...++.++..+
T Consensus 252 ~~~~~~~~l~~~~~~~~~~-~~~~v~~~al~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~ll~~l 330 (876)
T 1qgr_A 252 METYMGPALFAITIEAMKS-DIDEVALQGIEFWSNVCDEEMDLAIEASEAAEQGRPPEHTSKFYAKGALQYLVPILTQTL 330 (876)
T ss_dssp CHHHHTTTHHHHHHHHHTC-SSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSSCCSSCCCCHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHhcC-CchHHHHHHHHHHHHHHHHHHhHhhhhccccccCCCccchhHHHHHHHHHHHhHHHHHHh
Confidence 2223334678888887754 6789999999888888743210 0 000 0124566777777
Q ss_pred cC-------CCHHHHHHHHHHHHHhhccchhhhhhcchhhhHHHhhcChHHHHHHhhcCCCHHHHHHHHHHHHHhhcCCc
Q 006114 542 RS-------GNIDVIAQVARGLANFAKCESRAIVQGQRKGRSHLMEDSALEWLIANSKTNSASTRRHVELALCHLAQNED 614 (660)
Q Consensus 542 ~s-------~~~~v~~~Al~aLanLA~~~~~~~aq~~~e~r~~Li~~G~v~~Lv~lL~s~d~~vr~~Aa~AL~nLa~~~e 614 (660)
.. .+..++..|+.+|+.++...+ ..+ -..+++.+...+.+.+..+|..|+++|+.++.+..
T Consensus 331 ~~~~~d~~~~~~~~r~~a~~~l~~l~~~~~-----------~~~-~~~~l~~l~~~l~~~~~~~r~~a~~~l~~i~~~~~ 398 (876)
T 1qgr_A 331 TKQDENDDDDDWNPCKAAGVCLMLLATCCE-----------DDI-VPHVLPFIKEHIKNPDWRYRDAAVMAFGCILEGPE 398 (876)
T ss_dssp TCCCSSCCTTCCCHHHHHHHHHHHHHHHHG-----------GGG-HHHHHHHHHHHTTCSSHHHHHHHHHHHHHTSSSSC
T ss_pred hcccccccccccHHHHHHHHHHHHHHHHCc-----------Hhh-HHHHHHHHHHHccCCChHHHHHHHHHHHHHHcCCC
Confidence 52 345688899999998885321 111 13566777778888899999999999999987543
Q ss_pred --cHHHHHhcCcHHHHHHHHhcCChHHHHHHHHHHH
Q 006114 615 --NARDFISRGGAKELVQISIESSREDIRNLAKKTM 648 (660)
Q Consensus 615 --~~~~Ive~G~l~~Lv~lL~s~s~~~ir~~A~~~L 648 (660)
...... .++++.|+..+.+++ ..+|..|..+|
T Consensus 399 ~~~~~~~~-~~~l~~l~~~l~d~~-~~vr~~a~~~l 432 (876)
T 1qgr_A 399 PSQLKPLV-IQAMPTLIELMKDPS-VVVRDTAAWTV 432 (876)
T ss_dssp HHHHHHHH-HHHHHHHHHHHTCSS-HHHHHHHHHHH
T ss_pred HHHHHHHH-HHHHHHHHHHhCCCC-HHHHHHHHHHH
Confidence 222222 457889999997655 45666666555
No 69
>4ady_A RPN2, 26S proteasome regulatory subunit RPN2; protein binding, PC repeat; 2.70A {Saccharomyces cerevisiae} PDB: 4b4t_N
Probab=98.10 E-value=0.00014 Score=86.34 Aligned_cols=191 Identities=15% Similarity=0.092 Sum_probs=127.3
Q ss_pred HHHHHHhhCCCCHHHHHHHHHHHHHhhCCchhHHHHHHcCCHHHHHHHHccCCCHHHHHHHHHHHHHhhcC-chhHHHHH
Q 006114 409 LPKILQLLTSEDPDVQIHAVKVVANLAAEDINQEKIVEEGGLDALLLLLRTSQNTTILRVASGAIANLAMN-EMNQGLIM 487 (660)
Q Consensus 409 I~~LV~LL~s~d~~vr~~Aa~aL~nLa~~~en~~~Ive~GgI~~Lv~LL~~s~d~~v~~~Aa~AL~nLA~~-~~n~~~Iv 487 (660)
++.|+.+|..++..++..|+.+|+-+.....|.. ++..|+..+.++.+..+++.++.+|+.+..+ ++
T Consensus 474 ~e~L~~~L~dd~~~~~~~AalALGli~vGTgn~~------ai~~LL~~~~e~~~e~vrR~aalgLGll~~g~~e------ 541 (963)
T 4ady_A 474 YEALKEVLYNDSATSGEAAALGMGLCMLGTGKPE------AIHDMFTYSQETQHGNITRGLAVGLALINYGRQE------ 541 (963)
T ss_dssp HHHHHHHHHTCCHHHHHHHHHHHHHHHTTCCCHH------HHHHHHHHHHHCSCHHHHHHHHHHHHHHTTTCGG------
T ss_pred HHHHHHHHhcCCHHHHHHHHHHHhhhhcccCCHH------HHHHHHHHHhccCcHHHHHHHHHHHHhhhCCChH------
Confidence 5667777777777677777777776544322221 3566666665566788899999999987654 43
Q ss_pred hcCccHHHHHhhcCCCCHHHHHHHHHHHHHHh-cChhHHHHHHhccHHHHHHHHhc-CCCHHHHHHHHHHHHHhhccchh
Q 006114 488 SRGGGQLLAKTASKTDDPQTLRMVAGALANLC-GNEKLHTMLEEDGAIKALLAMVR-SGNIDVIAQVARGLANFAKCESR 565 (660)
Q Consensus 488 e~g~I~~Ll~LL~~s~d~~v~~~Aa~aLanLa-~~~~~r~~iv~~G~V~~Lv~lL~-s~~~~v~~~Al~aLanLA~~~~~ 565 (660)
.++.++..|....+|-++..++.+++.-+ +... ..+|..|+..+. ..+..|+..|+.+|+.++..++
T Consensus 542 ---~~~~li~~L~~~~dp~vRygaa~alglAyaGTGn-------~~aIq~LL~~~~~d~~d~VRraAViaLGlI~~g~~- 610 (963)
T 4ady_A 542 ---LADDLITKMLASDESLLRYGGAFTIALAYAGTGN-------NSAVKRLLHVAVSDSNDDVRRAAVIALGFVLLRDY- 610 (963)
T ss_dssp ---GGHHHHHHHHHCSCHHHHHHHHHHHHHHTTTSCC-------HHHHHHHHHHHHHCSCHHHHHHHHHHHHHHTSSSC-
T ss_pred ---HHHHHHHHHHhCCCHHHHHHHHHHHHHHhcCCCC-------HHHHHHHHHHhccCCcHHHHHHHHHHHHhhccCCH-
Confidence 67888888877788888888877776433 2111 124555555544 5678899999999999886543
Q ss_pred hhhhcchhhhHHHhhcChHHHHHHh-hcCCCHHHHHHHHHHHHHhhcCCccHHHHHhcCcHHHHHHHHhcCChHHHHHHH
Q 006114 566 AIVQGQRKGRSHLMEDSALEWLIAN-SKTNSASTRRHVELALCHLAQNEDNARDFISRGGAKELVQISIESSREDIRNLA 644 (660)
Q Consensus 566 ~~aq~~~e~r~~Li~~G~v~~Lv~l-L~s~d~~vr~~Aa~AL~nLa~~~e~~~~Ive~G~l~~Lv~lL~s~s~~~ir~~A 644 (660)
..++.++.+ +.+.++.+|..|++||+.+|....+. .+++.|..++.+.+. .+|..|
T Consensus 611 ----------------e~v~rlv~~L~~~~d~~VR~gAalALGli~aGn~~~------~aid~L~~L~~D~d~-~Vrq~A 667 (963)
T 4ady_A 611 ----------------TTVPRIVQLLSKSHNAHVRCGTAFALGIACAGKGLQ------SAIDVLDPLTKDPVD-FVRQAA 667 (963)
T ss_dssp ----------------SSHHHHTTTGGGCSCHHHHHHHHHHHHHHTSSSCCH------HHHHHHHHHHTCSSH-HHHHHH
T ss_pred ----------------HHHHHHHHHHHhcCCHHHHHHHHHHHHHhccCCCcH------HHHHHHHHHccCCCH-HHHHHH
Confidence 346666664 45678999999999999998765441 244556666655444 344444
Q ss_pred H
Q 006114 645 K 645 (660)
Q Consensus 645 ~ 645 (660)
.
T Consensus 668 i 668 (963)
T 4ady_A 668 M 668 (963)
T ss_dssp H
T ss_pred H
Confidence 4
No 70
>1i84_S Smooth muscle myosin heavy chain; muscle protein, myosin subfragment 2, heavy meromyosin, essential light chain, motor protein; HET: MLY; 20.00A {Gallus gallus} SCOP: i.15.1.1 PDB: 3j04_A 3dtp_B 3dtp_A
Probab=98.03 E-value=1e-05 Score=99.20 Aligned_cols=44 Identities=16% Similarity=0.340 Sum_probs=0.0
Q ss_pred HHHHhhHHHHHHHHHHHHHHHHHHhhhhchHHHHHHHHHHHhhh
Q 006114 170 VLADTTQMYEKKITELIKQLEIEHARSEGAEEQVDTMKKLISDN 213 (660)
Q Consensus 170 ~~~~~~~~~~~~~~~l~~~l~~e~~~~~~~~~~~~~l~~~l~~~ 213 (660)
.+....+.++.++.++...++........++.+...++..+.++
T Consensus 1001 ~l~~e~~~le~~i~~l~~~l~~~e~k~~~lek~~~~le~el~el 1044 (1184)
T 1i84_S 1001 KLTKERKLLEERVSDLTTNLAEEEEKAKNLTKLKNKHESMISEL 1044 (1184)
T ss_dssp --------------------------------------------
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444444444444444444444444333433333333333333
No 71
>1i84_S Smooth muscle myosin heavy chain; muscle protein, myosin subfragment 2, heavy meromyosin, essential light chain, motor protein; HET: MLY; 20.00A {Gallus gallus} SCOP: i.15.1.1 PDB: 3j04_A 3dtp_B 3dtp_A
Probab=97.97 E-value=1.3e-05 Score=98.24 Aligned_cols=43 Identities=7% Similarity=0.156 Sum_probs=12.3
Q ss_pred hHHHHhhhhHHHHHHHHHhhhhhhhhhhhhHHHHHHHHHHHhh
Q 006114 113 EFLEKENAHLELEVEKILGELNHQKDQNNLKREKIVQLEISLK 155 (660)
Q Consensus 113 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 155 (660)
+.+..+...++.+++++...+.........+..++..++.++.
T Consensus 916 ~~l~~~~~~Le~~l~ele~elee~ee~l~el~~e~~~le~el~ 958 (1184)
T 1i84_S 916 VRLAAKKQELEEILHEMEARIEEEEERSQQLQAEKKKMQQQML 958 (1184)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHC----------------
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344444444445544444444444333333334444433333
No 72
>1u6g_C TIP120 protein, CAND1; cullin repeat, heat repeat, ring finger, ligase; 3.10A {Homo sapiens} SCOP: a.118.1.2 PDB: 4a0c_A
Probab=97.95 E-value=3.4e-05 Score=94.49 Aligned_cols=210 Identities=15% Similarity=0.119 Sum_probs=143.9
Q ss_pred CHHHHHHhhCCCCHHHHHHHHHHHHHhhCCchhH-HHHHHcCCHHHHHHHHccCCCHHHHHHHHHHHHHhhcC-chhHHH
Q 006114 408 GLPKILQLLTSEDPDVQIHAVKVVANLAAEDINQ-EKIVEEGGLDALLLLLRTSQNTTILRVASGAIANLAMN-EMNQGL 485 (660)
Q Consensus 408 gI~~LV~LL~s~d~~vr~~Aa~aL~nLa~~~en~-~~Ive~GgI~~Lv~LL~~s~d~~v~~~Aa~AL~nLA~~-~~n~~~ 485 (660)
.++.|+.-+.++|.++|..|...|.+....+... ..-.....++.|+..|. ++++.+|..|+.+|+.++.. ++ .
T Consensus 7 ~l~~lL~~l~s~d~~~R~~A~~~L~~~l~~~~~~~~~~~~~~il~~Ll~~L~-d~~~~vR~~A~~~L~~l~~~~~~--~- 82 (1230)
T 1u6g_C 7 HISNLLEKMTSSDKDFRFMATNDLMTELQKDSIKLDDDSERKVVKMILKLLE-DKNGEVQNLAVKCLGPLVSKVKE--Y- 82 (1230)
T ss_dssp HHHHHHHHTTCSSHHHHHHHHHHHHHHTSSSCCSCCTTHHHHHHHHHHHHTT-CSSHHHHHHHHHHHHHHHTTSCH--H-
T ss_pred HHHHHHHhcCCCCHhHHHHHHHHHHHHHcccccCCChhHHHHHHHHHHHHhc-CCCHHHHHHHHHHHHHHHHhCCH--H-
Confidence 3677888889999999999999898765432110 00011124778888887 78999999999999999865 22 1
Q ss_pred HHhcCccHHHHHhhcCCCCHHHHHHHHHHHHHHh--cChhH----HHHHHhccHHHHHHHHhc-CCCHHHHHHHHHHHHH
Q 006114 486 IMSRGGGQLLAKTASKTDDPQTLRMVAGALANLC--GNEKL----HTMLEEDGAIKALLAMVR-SGNIDVIAQVARGLAN 558 (660)
Q Consensus 486 Ive~g~I~~Ll~LL~~s~d~~v~~~Aa~aLanLa--~~~~~----r~~iv~~G~V~~Lv~lL~-s~~~~v~~~Al~aLan 558 (660)
.-..+++.|+..+.+ +++.++..|+.+|..++ ..+.. ...-.....+|.|+..+. ++++.++..|+.+|+.
T Consensus 83 -~~~~i~~~Ll~~l~d-~~~~vR~~a~~~L~~i~~~l~~~~~~~~~~~~~~~~llp~L~~~l~~~~~~~~~~~al~~l~~ 160 (1230)
T 1u6g_C 83 -QVETIVDTLCTNMLS-DKEQLRDISSIGLKTVIGELPPASSGSALAANVCKKITGRLTSAIAKQEDVSVQLEALDIMAD 160 (1230)
T ss_dssp -HHHHHHHHHHHHTTC-SSSHHHHHHHHHHHHHHHHCC-----CCTHHHHHHHHHHHHHHHHSCCSCHHHHHHHHHHHHH
T ss_pred -HHHHHHHHHHHHhcC-CcHHHHHHHHHHHHHHHHhCCCcccccchHHHHHHHHHHHHHHHHcCCCchHHHHHHHHHHHH
Confidence 112357778888765 67788888889999887 22220 011123468899999998 5889999999999999
Q ss_pred hhccchhhhhhcchhhhHHHhhcChHHHHHHhhcCCCHHHHHHHHHHHHHhhcCCccHHHHHhcCcHHHHHHHHhcC
Q 006114 559 FAKCESRAIVQGQRKGRSHLMEDSALEWLIANSKTNSASTRRHVELALCHLAQNEDNARDFISRGGAKELVQISIES 635 (660)
Q Consensus 559 LA~~~~~~~aq~~~e~r~~Li~~G~v~~Lv~lL~s~d~~vr~~Aa~AL~nLa~~~e~~~~Ive~G~l~~Lv~lL~s~ 635 (660)
++...+.... . .-...++.++..+.+.++.+|..|+.+|..++...... + -...++.|+..+...
T Consensus 161 ~~~~~~~~l~-------~--~~~~ll~~l~~~L~~~~~~vR~~a~~al~~l~~~~~~~--~-~~~~l~~l~~~L~~~ 225 (1230)
T 1u6g_C 161 MLSRQGGLLV-------N--FHPSILTCLLPQLTSPRLAVRKRTIIALGHLVMSCGNI--V-FVDLIEHLLSELSKN 225 (1230)
T ss_dssp HHHHTCSSCT-------T--THHHHHHHHGGGGGCSSHHHHHHHHHHHHHHTTTC-------CTTHHHHHHHHHHHT
T ss_pred HHHHhHhHHH-------H--HHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHhcCHH--H-HHHHHHHHHHHhccC
Confidence 9853221110 0 11346778888888889999999999999998754321 1 223567777776654
No 73
>2qk2_A LP04448P; mini spindles, MSPS, XMAP215, DIS1, STU2, heat repeat, micro plus END, +TIP, protein binding; 2.10A {Drosophila melanogaster}
Probab=97.90 E-value=0.00021 Score=71.19 Aligned_cols=141 Identities=14% Similarity=0.126 Sum_probs=108.8
Q ss_pred HHHHHHhhC-CCCHHHHHHHHHHHHHhhC--CchhHHHHHHcCCHHHHHHHHccCCCHHHHHHHHHHHHHhhcCchhHHH
Q 006114 409 LPKILQLLT-SEDPDVQIHAVKVVANLAA--EDINQEKIVEEGGLDALLLLLRTSQNTTILRVASGAIANLAMNEMNQGL 485 (660)
Q Consensus 409 I~~LV~LL~-s~d~~vr~~Aa~aL~nLa~--~~en~~~Ive~GgI~~Lv~LL~~s~d~~v~~~Aa~AL~nLA~~~~n~~~ 485 (660)
++.|..++. +.+..|+..|+.+|+.|+. .+.....+.. .+|.|+..+. ++++.++..|+.+|.+++.....
T Consensus 58 ~~~L~~~l~kd~~~~V~~~a~~~l~~la~~l~~~~~~~~~~--ilp~ll~~l~-d~~~~vr~~a~~aL~~~~~~~~~--- 131 (242)
T 2qk2_A 58 VSALKKVITKDSNVVLVAMAGKCLALLAKGLAKRFSNYASA--CVPSLLEKFK-EKKPNVVTALREAIDAIYASTSL--- 131 (242)
T ss_dssp HHHHHHHHHHCSCHHHHHHHHHHHHHHHHHHGGGGHHHHHH--HHHHHHHGGG-CCCHHHHHHHHHHHHHHHTTSCH---
T ss_pred HHHHHHHhccCCCHHHHHHHHHHHHHHHHHHhhhHHHHHHH--HHHHHHHHHc-CCCHHHHHHHHHHHHHHHHcCCH---
Confidence 556677784 8999999999999999986 3333232222 5899999997 78899999999999999875331
Q ss_pred HHhcCccHHHHHhhcCCCCHHHHHHHHHHHHHHh-cC-hh--HHHHHHhccHHHHHHHHhcCCCHHHHHHHHHHHHHhhc
Q 006114 486 IMSRGGGQLLAKTASKTDDPQTLRMVAGALANLC-GN-EK--LHTMLEEDGAIKALLAMVRSGNIDVIAQVARGLANFAK 561 (660)
Q Consensus 486 Ive~g~I~~Ll~LL~~s~d~~v~~~Aa~aLanLa-~~-~~--~r~~iv~~G~V~~Lv~lL~s~~~~v~~~Al~aLanLA~ 561 (660)
...++.+...+.+ .++.++..++.+|..+. .. +. ....+ ...+|.|+.++..+++.++..|..+|+.|+.
T Consensus 132 ---~~ll~~l~~~l~~-~~~~vr~~~l~~l~~~l~~~~~~~~~~~~l--~~l~p~l~~~l~D~~~~VR~~A~~~l~~l~~ 205 (242)
T 2qk2_A 132 ---EAQQESIVESLSN-KNPSVKSETALFIARALTRTQPTALNKKLL--KLLTTSLVKTLNEPDPTVRDSSAEALGTLIK 205 (242)
T ss_dssp ---HHHHHHHHHHTTC-SCHHHHHHHHHHHHHHHTTCCGGGCCHHHH--HHHHHHHHHHHTSSCHHHHHHHHHHHHHHHH
T ss_pred ---HHHHHHHHHHHcC-CChHHHHHHHHHHHHHHHHcCCCCccHHHH--HHHHHHHHHHhcCCChHHHHHHHHHHHHHHH
Confidence 1356778888865 78999999999999964 32 33 12222 2688999999999999999999999999984
No 74
>4ady_A RPN2, 26S proteasome regulatory subunit RPN2; protein binding, PC repeat; 2.70A {Saccharomyces cerevisiae} PDB: 4b4t_N
Probab=97.89 E-value=0.00021 Score=84.82 Aligned_cols=167 Identities=14% Similarity=0.081 Sum_probs=124.8
Q ss_pred HHHHHHhh-CCCCHHHHHHHHHHHHHhhCCchhHHHHHHcCCHHHHHHHHccCCCHHHHHHHHHHHHHhhcCchhHHHHH
Q 006114 409 LPKILQLL-TSEDPDVQIHAVKVVANLAAEDINQEKIVEEGGLDALLLLLRTSQNTTILRVASGAIANLAMNEMNQGLIM 487 (660)
Q Consensus 409 I~~LV~LL-~s~d~~vr~~Aa~aL~nLa~~~en~~~Ive~GgI~~Lv~LL~~s~d~~v~~~Aa~AL~nLA~~~~n~~~Iv 487 (660)
+..|+..+ ...+..+++.++..|+.+.... ..+++.++..|..+.++-++..++.+++--..+..+..
T Consensus 509 i~~LL~~~~e~~~e~vrR~aalgLGll~~g~--------~e~~~~li~~L~~~~dp~vRygaa~alglAyaGTGn~~--- 577 (963)
T 4ady_A 509 IHDMFTYSQETQHGNITRGLAVGLALINYGR--------QELADDLITKMLASDESLLRYGGAFTIALAYAGTGNNS--- 577 (963)
T ss_dssp HHHHHHHHHHCSCHHHHHHHHHHHHHHTTTC--------GGGGHHHHHHHHHCSCHHHHHHHHHHHHHHTTTSCCHH---
T ss_pred HHHHHHHHhccCcHHHHHHHHHHHHhhhCCC--------hHHHHHHHHHHHhCCCHHHHHHHHHHHHHHhcCCCCHH---
Confidence 45666544 3557788888888888776533 23588899999888899999988888875444433322
Q ss_pred hcCccHHHHHhhcCCCCHHHHHHHHHHHHHHh-cChhHHHHHHhccHHHHHHHH-hcCCCHHHHHHHHHHHHHhhccchh
Q 006114 488 SRGGGQLLAKTASKTDDPQTLRMVAGALANLC-GNEKLHTMLEEDGAIKALLAM-VRSGNIDVIAQVARGLANFAKCESR 565 (660)
Q Consensus 488 e~g~I~~Ll~LL~~s~d~~v~~~Aa~aLanLa-~~~~~r~~iv~~G~V~~Lv~l-L~s~~~~v~~~Al~aLanLA~~~~~ 565 (660)
+|..|+..+.+..+..+++.|+.+|+.++ .++ ..++.++.. +.+.++.++..|+.+|+.++..++.
T Consensus 578 ---aIq~LL~~~~~d~~d~VRraAViaLGlI~~g~~---------e~v~rlv~~L~~~~d~~VR~gAalALGli~aGn~~ 645 (963)
T 4ady_A 578 ---AVKRLLHVAVSDSNDDVRRAAVIALGFVLLRDY---------TTVPRIVQLLSKSHNAHVRCGTAFALGIACAGKGL 645 (963)
T ss_dssp ---HHHHHHHHHHHCSCHHHHHHHHHHHHHHTSSSC---------SSHHHHTTTGGGCSCHHHHHHHHHHHHHHTSSSCC
T ss_pred ---HHHHHHHHhccCCcHHHHHHHHHHHHhhccCCH---------HHHHHHHHHHHhcCCHHHHHHHHHHHHHhccCCCc
Confidence 45667776665677899999999999886 433 346667764 4578999999999999999876542
Q ss_pred hhhhcchhhhHHHhhcChHHHHHHhhcCCCHHHHHHHHHHHHHhhcCC
Q 006114 566 AIVQGQRKGRSHLMEDSALEWLIANSKTNSASTRRHVELALCHLAQNE 613 (660)
Q Consensus 566 ~~aq~~~e~r~~Li~~G~v~~Lv~lL~s~d~~vr~~Aa~AL~nLa~~~ 613 (660)
..+++.|.+++.+.++.||.+|+.+|+.+....
T Consensus 646 ---------------~~aid~L~~L~~D~d~~Vrq~Ai~ALG~Ig~gt 678 (963)
T 4ady_A 646 ---------------QSAIDVLDPLTKDPVDFVRQAAMIALSMILIQQ 678 (963)
T ss_dssp ---------------HHHHHHHHHHHTCSSHHHHHHHHHHHHHHSTTC
T ss_pred ---------------HHHHHHHHHHccCCCHHHHHHHHHHHHHHhcCC
Confidence 236778888999999999999999999997644
No 75
>1u6g_C TIP120 protein, CAND1; cullin repeat, heat repeat, ring finger, ligase; 3.10A {Homo sapiens} SCOP: a.118.1.2 PDB: 4a0c_A
Probab=97.88 E-value=2.2e-05 Score=96.22 Aligned_cols=258 Identities=14% Similarity=0.126 Sum_probs=163.9
Q ss_pred hhhhhhcccCCCccccccchhhh----hhcCchhHHHHHhCCCHHHHHHhhCCCCHHHHHHHHHHHHHhhCCchhHHHHH
Q 006114 370 YISKGSSRFGAPMSLQKSNPSRE----LSGQRATIAKICDEVGLPKILQLLTSEDPDVQIHAVKVVANLAAEDINQEKIV 445 (660)
Q Consensus 370 ~i~~l~~~L~~~~~~vr~~~~~~----laa~~~~~~~I~e~ggI~~LV~LL~s~d~~vr~~Aa~aL~nLa~~~en~~~Iv 445 (660)
.+..++..+.+++..+|..+... +.........-.....++.|+..|.+++..+|..|+.+|+.++..-.. ..+
T Consensus 7 ~l~~lL~~l~s~d~~~R~~A~~~L~~~l~~~~~~~~~~~~~~il~~Ll~~L~d~~~~vR~~A~~~L~~l~~~~~~-~~~- 84 (1230)
T 1u6g_C 7 HISNLLEKMTSSDKDFRFMATNDLMTELQKDSIKLDDDSERKVVKMILKLLEDKNGEVQNLAVKCLGPLVSKVKE-YQV- 84 (1230)
T ss_dssp HHHHHHHHTTCSSHHHHHHHHHHHHHHTSSSCCSCCTTHHHHHHHHHHHHTTCSSHHHHHHHHHHHHHHHTTSCH-HHH-
T ss_pred HHHHHHHhcCCCCHhHHHHHHHHHHHHHcccccCCChhHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHhCCH-HHH-
Confidence 45566777777777666644332 111100000000113467788888899999999999999999873211 111
Q ss_pred HcCCHHHHHHHHccCCCHHHHHHHHHHHHHhhcC-chh-----HHHHHhcCccHHHHHhhcCCCCHHHHHHHHHHHHHHh
Q 006114 446 EEGGLDALLLLLRTSQNTTILRVASGAIANLAMN-EMN-----QGLIMSRGGGQLLAKTASKTDDPQTLRMVAGALANLC 519 (660)
Q Consensus 446 e~GgI~~Lv~LL~~s~d~~v~~~Aa~AL~nLA~~-~~n-----~~~Ive~g~I~~Ll~LL~~s~d~~v~~~Aa~aLanLa 519 (660)
...++.|+..|. ++++.+|..|+.+|+.++.. +.. ...-.....+|.|+..+.+++++.++..|+.+|..++
T Consensus 85 -~~i~~~Ll~~l~-d~~~~vR~~a~~~L~~i~~~l~~~~~~~~~~~~~~~~llp~L~~~l~~~~~~~~~~~al~~l~~~~ 162 (1230)
T 1u6g_C 85 -ETIVDTLCTNML-SDKEQLRDISSIGLKTVIGELPPASSGSALAANVCKKITGRLTSAIAKQEDVSVQLEALDIMADML 162 (1230)
T ss_dssp -HHHHHHHHHHTT-CSSSHHHHHHHHHHHHHHHHCC-----CCTHHHHHHHHHHHHHHHHSCCSCHHHHHHHHHHHHHHH
T ss_pred -HHHHHHHHHHhc-CCcHHHHHHHHHHHHHHHHhCCCcccccchHHHHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHHH
Confidence 124677788886 66778899999999998754 211 0111234578999999875578899999999999987
Q ss_pred c--ChhHHHHHHhccHHHHHHHHhcCCCHHHHHHHHHHHHHhhccchhhhhhcchhhhHHHhhcChHHHHHHhhcCCC-H
Q 006114 520 G--NEKLHTMLEEDGAIKALLAMVRSGNIDVIAQVARGLANFAKCESRAIVQGQRKGRSHLMEDSALEWLIANSKTNS-A 596 (660)
Q Consensus 520 ~--~~~~r~~iv~~G~V~~Lv~lL~s~~~~v~~~Al~aLanLA~~~~~~~aq~~~e~r~~Li~~G~v~~Lv~lL~s~d-~ 596 (660)
. .+..... -...++.++..+.++++.++..|+.+|+.++...+. .+ -...++.++..+.+.+ .
T Consensus 163 ~~~~~~l~~~--~~~ll~~l~~~L~~~~~~vR~~a~~al~~l~~~~~~-----------~~-~~~~l~~l~~~L~~~~~~ 228 (1230)
T 1u6g_C 163 SRQGGLLVNF--HPSILTCLLPQLTSPRLAVRKRTIIALGHLVMSCGN-----------IV-FVDLIEHLLSELSKNDSM 228 (1230)
T ss_dssp HHTCSSCTTT--HHHHHHHHGGGGGCSSHHHHHHHHHHHHHHTTTC----------------CTTHHHHHHHHHHHTCSS
T ss_pred HHhHhHHHHH--HHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHhcCH-----------HH-HHHHHHHHHHHhccCCch
Confidence 2 1111111 134677788888888999999999999999865321 11 2346788887776543 4
Q ss_pred HHHHHHHHHHHHhhcCCccHHHHH--hcCcHHHHHHHHhcCChHHHHHHHHHHH
Q 006114 597 STRRHVELALCHLAQNEDNARDFI--SRGGAKELVQISIESSREDIRNLAKKTM 648 (660)
Q Consensus 597 ~vr~~Aa~AL~nLa~~~e~~~~Iv--e~G~l~~Lv~lL~s~s~~~ir~~A~~~L 648 (660)
.+|..++.++..++..... .+. -..+++.++..+.+.+ +.+|..|..++
T Consensus 229 ~~r~~a~~~l~~l~~~~~~--~~~~~l~~l~~~ll~~l~d~~-~~vR~~a~~~l 279 (1230)
T 1u6g_C 229 STTRTYIQCIAAISRQAGH--RIGEYLEKIIPLVVKFCNVDD-DELREYCIQAF 279 (1230)
T ss_dssp CSCTTHHHHHHHHHHHSSG--GGTTSCTTHHHHHHHHHSSCC-TTTHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHhHH--HHHHHHHHHHHHHHHHhcCCC-HHHHHHHHHHH
Confidence 6777888888888753321 111 1457888888887543 34555555443
No 76
>2vgl_A Adaptor protein complex AP-2, alpha 2 subunit; cytoplasmic vesicle, alternative splicing, endocytosis, lipid-binding, golgi apparatus, adaptor, membrane, transport; HET: IHP; 2.59A {Rattus norvegicus} PDB: 2xa7_A 2jkr_A 2jkt_A
Probab=97.87 E-value=0.00027 Score=80.98 Aligned_cols=236 Identities=12% Similarity=0.101 Sum_probs=151.4
Q ss_pred hhhhhhccc--CCCccccccchhhh---hhcCchhHHHHHh-CCCHHHHHHhhCCCCHHHHHHHHHHHHHhhC-CchhHH
Q 006114 370 YISKGSSRF--GAPMSLQKSNPSRE---LSGQRATIAKICD-EVGLPKILQLLTSEDPDVQIHAVKVVANLAA-EDINQE 442 (660)
Q Consensus 370 ~i~~l~~~L--~~~~~~vr~~~~~~---laa~~~~~~~I~e-~ggI~~LV~LL~s~d~~vr~~Aa~aL~nLa~-~~en~~ 442 (660)
-++.+..++ .+..+.+|..++-+ +...++ .++. .+.++.|..+|.+.++.|+.+|+.+|..++. ++..
T Consensus 147 l~~~v~~~l~~~d~~~~VRK~A~~al~kl~~~~p---~~~~~~~~~~~l~~lL~d~d~~V~~~a~~~l~~i~~~~~~~-- 221 (621)
T 2vgl_A 147 FAGEIPKILVAGDTMDSVKQSAALCLLRLYRTSP---DLVPMGDWTSRVVHLLNDQHLGVVTAATSLITTLAQKNPEE-- 221 (621)
T ss_dssp HTTHHHHHHHCSSSCHHHHHHHHHHHHHHHHHCG---GGCCCCSCHHHHHHHTTCSCHHHHHHHHHHHHHHHHHCHHH--
T ss_pred HHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHhCh---hhcCchhHHHHHHHHhCCCCccHHHHHHHHHHHHHHhChHH--
Confidence 344566677 78888888776555 222222 1222 3789999999999999999999999999887 4321
Q ss_pred HHHHcCCHHHHHHHHc----c--C----------CCHHHHHHHHHHHHHhhcC--chhHHHHHhcCccHHHHHhhcCCC-
Q 006114 443 KIVEEGGLDALLLLLR----T--S----------QNTTILRVASGAIANLAMN--EMNQGLIMSRGGGQLLAKTASKTD- 503 (660)
Q Consensus 443 ~Ive~GgI~~Lv~LL~----~--s----------~d~~v~~~Aa~AL~nLA~~--~~n~~~Ive~g~I~~Ll~LL~~s~- 503 (660)
+ ...+|.++..|. . . ++|-.+.....+|+.++.. +.....+.+ .++.++..+.+.+
T Consensus 222 -~--~~~~~~~~~~L~~ll~~~~~~~~~~~~~~~~~~w~qi~il~ll~~~~~~~d~~~~~~l~~--~L~~il~~~~~~~k 296 (621)
T 2vgl_A 222 -F--KTSVSLAVSRLSRIVTSASTDLQDYTYYFVPAPWLSVKLLRLLQCYPPPEDPAVRGRLTE--CLETILNKAQEPPK 296 (621)
T ss_dssp -H--TTHHHHHHHHHHHHHHCCSSSCSTTEETTEESHHHHHHHHHHGGGSSSCSSHHHHHHHHH--HHHHHHHHHHSCCS
T ss_pred -H--HHHHHHHHHHHHHHHhCCCCCccchhhcCCCCchHHHHHHHHHHHhCCCCCHHHHHHHHH--HHHHHHHhhccCcc
Confidence 1 123455554442 1 1 1677888888888887753 333433332 3334443322212
Q ss_pred ---------CHHHHHHHHHHHHHHhcChhHHHHHHhccHHHHHHHHhcCCCHHHHHHHHHHHHHhhccchhhhhhcchhh
Q 006114 504 ---------DPQTLRMVAGALANLCGNEKLHTMLEEDGAIKALLAMVRSGNIDVIAQVARGLANFAKCESRAIVQGQRKG 574 (660)
Q Consensus 504 ---------d~~v~~~Aa~aLanLa~~~~~r~~iv~~G~V~~Lv~lL~s~~~~v~~~Al~aLanLA~~~~~~~aq~~~e~ 574 (660)
.+.|...|+.++..+..+++... .++..|..++.+++++++..|+.+|..|+...+.
T Consensus 297 s~~l~~~n~~~aVl~ea~~~i~~l~~~~~~~~-----~~~~~L~~~L~~~~~niry~aL~~l~~l~~~~~~--------- 362 (621)
T 2vgl_A 297 SKKVQHSNAKNAVLFEAISLIIHHDSEPNLLV-----RACNQLGQFLQHRETNLRYLALESMCTLASSEFS--------- 362 (621)
T ss_dssp CSSHHHHHHHHHHHHHHHHHHHHHCCCHHHHH-----HHHHHHHHHSSCSCHHHHHHHHHHHHHHTTCTTT---------
T ss_pred cccccccchHHHHHHHHHHHHHhcCCcHHHHH-----HHHHHHHHHhcCCCcchHHHHHHHHHHHHhccCc---------
Confidence 23788888899988876554433 4677888889899999999999999999865431
Q ss_pred hHHHhhcChHHHHHHhhc-CCCHHHHHHHHHHHHHhhcCCccHHHHHhcCcHHHHHHHHhcCCh
Q 006114 575 RSHLMEDSALEWLIANSK-TNSASTRRHVELALCHLAQNEDNARDFISRGGAKELVQISIESSR 637 (660)
Q Consensus 575 r~~Li~~G~v~~Lv~lL~-s~d~~vr~~Aa~AL~nLa~~~e~~~~Ive~G~l~~Lv~lL~s~s~ 637 (660)
...+ ....+.++..+. ++|..++..|...|..++... |... ++..|..++...+.
T Consensus 363 ~~~~--~~~~~~i~~~L~~d~d~~Ir~~aL~lL~~l~~~~-Nv~~-----Iv~eL~~yl~~~d~ 418 (621)
T 2vgl_A 363 HEAV--KTHIETVINALKTERDVSVRQRAVDLLYAMCDRS-NAQQ-----IVAEMLSYLETADY 418 (621)
T ss_dssp HHHH--HTTHHHHHHHHTTCCCHHHHHHHHHHHHHHCCHH-HHHH-----HHHHHHHHHHHCCH
T ss_pred HHHH--HHHHHHHHHHhccCCCHhHHHHHHHHHHHHcChh-hHHH-----HHHHHHHHHHhcCH
Confidence 0111 234566777777 788889988888888887432 3222 34455555555443
No 77
>2vgl_A Adaptor protein complex AP-2, alpha 2 subunit; cytoplasmic vesicle, alternative splicing, endocytosis, lipid-binding, golgi apparatus, adaptor, membrane, transport; HET: IHP; 2.59A {Rattus norvegicus} PDB: 2xa7_A 2jkr_A 2jkt_A
Probab=97.84 E-value=0.0002 Score=81.99 Aligned_cols=247 Identities=13% Similarity=0.078 Sum_probs=160.9
Q ss_pred hhhhhcccCCCccccccchhhhhhc-CchhHHHHHhCCCHHHHHHhh--CCCCHHHHHHHHHHHHHhhC-CchhHHHHHH
Q 006114 371 ISKGSSRFGAPMSLQKSNPSRELSG-QRATIAKICDEVGLPKILQLL--TSEDPDVQIHAVKVVANLAA-EDINQEKIVE 446 (660)
Q Consensus 371 i~~l~~~L~~~~~~vr~~~~~~laa-~~~~~~~I~e~ggI~~LV~LL--~s~d~~vr~~Aa~aL~nLa~-~~en~~~Ive 446 (660)
+..+...+.++.+.++..+++.++. ..+. ++ ...+|.+..+| .+.++.||..|+-++..+.. +|+.. ..
T Consensus 113 iN~l~kDl~~~n~~ir~lALr~L~~i~~~e---~~-~~l~~~v~~~l~~~d~~~~VRK~A~~al~kl~~~~p~~~---~~ 185 (621)
T 2vgl_A 113 NNAIKNDLASRNPTFMGLALHCIANVGSRE---MA-EAFAGEIPKILVAGDTMDSVKQSAALCLLRLYRTSPDLV---PM 185 (621)
T ss_dssp HHHHHHHHHSCCHHHHHHHHHHHHHHCCHH---HH-HHHTTHHHHHHHCSSSCHHHHHHHHHHHHHHHHHCGGGC---CC
T ss_pred HHHHHHhcCCCCHHHHHHHHHHhhccCCHH---HH-HHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHhChhhc---Cc
Confidence 3345556667777888777777332 2222 21 23467788888 88999999999999999887 55332 12
Q ss_pred cCCHHHHHHHHccCCCHHHHHHHHHHHHHhhcC-chhHHHHHhcCccHHHH----HhhcC--CC----------CHHHHH
Q 006114 447 EGGLDALLLLLRTSQNTTILRVASGAIANLAMN-EMNQGLIMSRGGGQLLA----KTASK--TD----------DPQTLR 509 (660)
Q Consensus 447 ~GgI~~Lv~LL~~s~d~~v~~~Aa~AL~nLA~~-~~n~~~Ive~g~I~~Ll----~LL~~--s~----------d~~v~~ 509 (660)
.+.++.|..+|. ++|+.|+..|+.+|..++.. +.. + ...+|.++ .++.. .+ +|..+.
T Consensus 186 ~~~~~~l~~lL~-d~d~~V~~~a~~~l~~i~~~~~~~---~--~~~~~~~~~~L~~ll~~~~~~~~~~~~~~~~~~w~qi 259 (621)
T 2vgl_A 186 GDWTSRVVHLLN-DQHLGVVTAATSLITTLAQKNPEE---F--KTSVSLAVSRLSRIVTSASTDLQDYTYYFVPAPWLSV 259 (621)
T ss_dssp CSCHHHHHHHTT-CSCHHHHHHHHHHHHHHHHHCHHH---H--TTHHHHHHHHHHHHHHCCSSSCSTTEETTEESHHHHH
T ss_pred hhHHHHHHHHhC-CCCccHHHHHHHHHHHHHHhChHH---H--HHHHHHHHHHHHHHHhCCCCCccchhhcCCCCchHHH
Confidence 467999999996 88999999999999999764 321 1 12334443 33322 11 688888
Q ss_pred HHHHHHHHHhc--ChhHHHHHHhccHHHHHHHHhc---------CCC--HHHHHHHHHHHHHhhccchhhhhhcchhhhH
Q 006114 510 MVAGALANLCG--NEKLHTMLEEDGAIKALLAMVR---------SGN--IDVIAQVARGLANFAKCESRAIVQGQRKGRS 576 (660)
Q Consensus 510 ~Aa~aLanLa~--~~~~r~~iv~~G~V~~Lv~lL~---------s~~--~~v~~~Al~aLanLA~~~~~~~aq~~~e~r~ 576 (660)
.....|+.++. ++..+..+.+ .++.++..+. +.+ ..|...|+.++..+... +.
T Consensus 260 ~il~ll~~~~~~~d~~~~~~l~~--~L~~il~~~~~~~ks~~l~~~n~~~aVl~ea~~~i~~l~~~-~~----------- 325 (621)
T 2vgl_A 260 KLLRLLQCYPPPEDPAVRGRLTE--CLETILNKAQEPPKSKKVQHSNAKNAVLFEAISLIIHHDSE-PN----------- 325 (621)
T ss_dssp HHHHHGGGSSSCSSHHHHHHHHH--HHHHHHHHHHSCCSCSSHHHHHHHHHHHHHHHHHHHHHCCC-HH-----------
T ss_pred HHHHHHHHhCCCCCHHHHHHHHH--HHHHHHHhhccCcccccccccchHHHHHHHHHHHHHhcCCc-HH-----------
Confidence 88888888874 3455544443 3444443331 123 37888888888887622 11
Q ss_pred HHhhcChHHHHHHhhcCCCHHHHHHHHHHHHHhhcCCccHHHHHhcCcHHHHHHHHhcCChHHHHHHHHHHH
Q 006114 577 HLMEDSALEWLIANSKTNSASTRRHVELALCHLAQNEDNARDFISRGGAKELVQISIESSREDIRNLAKKTM 648 (660)
Q Consensus 577 ~Li~~G~v~~Lv~lL~s~d~~vr~~Aa~AL~nLa~~~e~~~~Ive~G~l~~Lv~lL~s~s~~~ir~~A~~~L 648 (660)
+ -..++..|..++.+.++.+|-.|..+|..++........ +. .....++..+...++..++..|..+|
T Consensus 326 -~-~~~~~~~L~~~L~~~~~niry~aL~~l~~l~~~~~~~~~-~~-~~~~~i~~~L~~d~d~~Ir~~aL~lL 393 (621)
T 2vgl_A 326 -L-LVRACNQLGQFLQHRETNLRYLALESMCTLASSEFSHEA-VK-THIETVINALKTERDVSVRQRAVDLL 393 (621)
T ss_dssp -H-HHHHHHHHHHHSSCSCHHHHHHHHHHHHHHTTCTTTHHH-HH-TTHHHHHHHHTTCCCHHHHHHHHHHH
T ss_pred -H-HHHHHHHHHHHhcCCCcchHHHHHHHHHHHHhccCcHHH-HH-HHHHHHHHHhccCCCHhHHHHHHHHH
Confidence 1 124677888899889999999999999999875532222 22 24566666666233455777777665
No 78
>2qk1_A Protein STU2; STU2P, XMAP215, DIS1, TOG, CH-TOG, heat repeat, microtubule plus END, +TIP, protein binding; 1.70A {Saccharomyces cerevisiae}
Probab=97.83 E-value=8.2e-05 Score=75.46 Aligned_cols=191 Identities=10% Similarity=0.101 Sum_probs=130.6
Q ss_pred HHhhCCCCHHHHHHHHHHHHH-hhC-CchhHHHHHH-cCCHHHHHHHHccCCCHHHHHHHHHHHHHhhcC-c--hhH-HH
Q 006114 413 LQLLTSEDPDVQIHAVKVVAN-LAA-EDINQEKIVE-EGGLDALLLLLRTSQNTTILRVASGAIANLAMN-E--MNQ-GL 485 (660)
Q Consensus 413 V~LL~s~d~~vr~~Aa~aL~n-La~-~~en~~~Ive-~GgI~~Lv~LL~~s~d~~v~~~Aa~AL~nLA~~-~--~n~-~~ 485 (660)
...+.+.+..-|..|+..|.. ++. .+.......+ ...+..|...+..+.+..++..|+.+|+.||.+ . ... ..
T Consensus 22 ~~~l~s~~w~eRk~al~~L~~~~~~~~~~i~~~~~~~~~~~~~L~~~l~~D~n~~v~~~A~~al~~la~~l~~~~f~~~y 101 (249)
T 2qk1_A 22 QERITSSKWKDRVEALEEFWDSVLSQTKKLKSTSQNYSNLLGIYGHIIQKDANIQAVALAAQSVELICDKLKTPGFSKDY 101 (249)
T ss_dssp HHHHTCSSHHHHHHHHHHHHHHTGGGCCCBCCTTCCCHHHHHHHHHHHHHCSCHHHHHHHHHHHHHHHHHHCTTTSCHHH
T ss_pred HHHhhcCCHHHHHHHHHHHHHHHHhcCCccccCcccHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHhcccccccHHH
Confidence 456688999999999999999 864 3322100001 112667778884488999999999999999853 2 222 12
Q ss_pred HHhcCccHHHHHhhcCCCCHHHHHHHHHHHHHHhc-ChhHHHHHHhccHHHHHHHHhcCCCHHHHHHHHHHHHHhhccch
Q 006114 486 IMSRGGGQLLAKTASKTDDPQTLRMVAGALANLCG-NEKLHTMLEEDGAIKALLAMVRSGNIDVIAQVARGLANFAKCES 564 (660)
Q Consensus 486 Ive~g~I~~Ll~LL~~s~d~~v~~~Aa~aLanLa~-~~~~r~~iv~~G~V~~Lv~lL~s~~~~v~~~Al~aLanLA~~~~ 564 (660)
. .-++|.++..+.+ ..+.|+..+..+|-.++. .+.....-.=..+++.|+..+.++++.++..++.+|+.++...+
T Consensus 102 ~--~~llp~ll~~l~d-kk~~V~~aa~~al~~i~~~~~~~~~~~~l~~ll~~l~~~l~~k~~~vk~~al~~l~~~~~~~~ 178 (249)
T 2qk1_A 102 V--SLVFTPLLDRTKE-KKPSVIEAIRKALLTICKYYDPLASSGRNEDMLKDILEHMKHKTPQIRMECTQLFNASMKEEK 178 (249)
T ss_dssp H--HHHHHHHHHGGGC-CCHHHHHHHHHHHHHHHHHSCTTCTTCTTHHHHHHHHHHTTCSSHHHHHHHHHHHHHHHHHCC
T ss_pred H--HHHHHHHHHHHcC-CCHHHHHHHHHHHHHHHHHccccccCCcHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHHcC
Confidence 1 2267888998875 568898888888888873 21110000011367788899999999999999999999884321
Q ss_pred hhhhhcchhhhHHHhhcChHHHHHHhhcCCCHHHHHHHHHHHHHhhc
Q 006114 565 RAIVQGQRKGRSHLMEDSALEWLIANSKTNSASTRRHVELALCHLAQ 611 (660)
Q Consensus 565 ~~~aq~~~e~r~~Li~~G~v~~Lv~lL~s~d~~vr~~Aa~AL~nLa~ 611 (660)
.. +..-...+....+|.|..++.+.++.||..|..+|..++.
T Consensus 179 ~~-----~~~l~~~l~~~iip~l~~~l~D~~~~VR~aA~~~l~~i~~ 220 (249)
T 2qk1_A 179 DG-----YSTLQRYLKDEVVPIVIQIVNDTQPAIRTIGFESFAILIK 220 (249)
T ss_dssp SC-----SHHHHHHHTTTHHHHHHHHHTCSSHHHHHHHHHHHHHHHH
T ss_pred Cc-----chhHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHH
Confidence 00 0000011225789999999999999999999999998864
No 79
>3dad_A FH1/FH2 domain-containing protein 1; formin, FHOD1, GTPase-binding domain, ubiquitin-superfold, armadillo repeats, actin-binding, coiled coil; 2.30A {Homo sapiens}
Probab=97.82 E-value=0.0013 Score=69.30 Aligned_cols=189 Identities=10% Similarity=0.025 Sum_probs=138.5
Q ss_pred HHHHHHhhCCCCHHHHHHHHHHHHH-hhCCchhHHHHHHcCCHHHHHHHHccCCCHHHHHHHHHHHHHhhcCchhHHHHH
Q 006114 409 LPKILQLLTSEDPDVQIHAVKVVAN-LAAEDINQEKIVEEGGLDALLLLLRTSQNTTILRVASGAIANLAMNEMNQGLIM 487 (660)
Q Consensus 409 I~~LV~LL~s~d~~vr~~Aa~aL~n-La~~~en~~~Ive~GgI~~Lv~LL~~s~d~~v~~~Aa~AL~nLA~~~~n~~~Iv 487 (660)
+..++.-|.+.+...++.|+.-|.. +..+......++..||+..|+.+.. ..+.+++.++..|+.+|..+.+...-|+
T Consensus 120 a~~iiekL~~~~~~~lr~aLfsLk~~~q~D~~Fa~EFI~~~GL~~Li~vi~-~~~gN~q~Y~L~AL~~LM~~v~Gm~gvv 198 (339)
T 3dad_A 120 VNAILEKLYSSSGPELRRSLFSLKQIFQEDKDLVPEFVHSEGLSCLIRVGA-AADHNYQSYILRALGQLMLFVDGMLGVV 198 (339)
T ss_dssp HHHHHHHHHHCCHHHHHHHHHHHHHHHHTCTTHHHHHHHTTHHHHHHHHHT-TSCHHHHHHHHHHHHHHTTSHHHHHHHH
T ss_pred HHHHHHHHhcCCcHHHHHHHHHHHHHhhcchHHHHHHHHhccHHHHHHHHH-hcChHHHHHHHHHHHHHHhccccccchh
Confidence 4556677777888889999999998 5568889999999999999999997 5699999999999999999988887777
Q ss_pred h-cCccHHHHHhhcCCCCHHHHHHHHHHHHHHh-cChhHHHHHHhcc----------HHHHHHHHhc---CCCHHHHHHH
Q 006114 488 S-RGGGQLLAKTASKTDDPQTLRMVAGALANLC-GNEKLHTMLEEDG----------AIKALLAMVR---SGNIDVIAQV 552 (660)
Q Consensus 488 e-~g~I~~Ll~LL~~s~d~~v~~~Aa~aLanLa-~~~~~r~~iv~~G----------~V~~Lv~lL~---s~~~~v~~~A 552 (660)
. ...|..+..++. +.++.|.+.|+..|..++ .++.+...+...= -+..|+.+|. +.+.+++.+|
T Consensus 199 s~~~fI~~lyslv~-s~~~~V~k~AL~LL~v~V~~se~~~~lv~~av~~v~~~~~~~p~~~Lv~~L~~~~~~D~elq~~a 277 (339)
T 3dad_A 199 AHSDTIQWLYTLCA-SLSRLVVKTALKLLLVFVEYSENNAPLFIRAVNSVASTTGAPPWANLVSILEEKNGADPELLVYT 277 (339)
T ss_dssp HCHHHHHHHHHGGG-CSCHHHHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHHHHCCCTTHHHHHHHTTTTSCCHHHHHHH
T ss_pred CCHHHHHHHHHHHc-CccHHHHHHHHHHHHHHHccCcccchHHHHHHHHhhhccCCCcHHHHHHHHhccCCCCHHHHHHH
Confidence 4 667888888886 588999999999999998 4444554443321 1567899997 7899999888
Q ss_pred HHHHHHhhccchhhhhhcchhhhHHHhhcChHHHHHHhhcCC--CHHHHHH
Q 006114 553 ARGLANFAKCESRAIVQGQRKGRSHLMEDSALEWLIANSKTN--SASTRRH 601 (660)
Q Consensus 553 l~aLanLA~~~~~~~aq~~~e~r~~Li~~G~v~~Lv~lL~s~--d~~vr~~ 601 (660)
+..|-.+-..-++.-+ .......+-..|.-..+.+++... ++.++++
T Consensus 278 mtLIN~lL~~apd~d~--~~di~d~Le~~gi~~~i~r~l~~~~~~~~l~~Q 326 (339)
T 3dad_A 278 VTLINKTLAALPDQDS--FYDVTDALEQQGMEALVQRHLGTAGTDVDLRTQ 326 (339)
T ss_dssp HHHHHHHHHHCSSHHH--HHHHHHHHHHTTHHHHHHHHHSCTTSCHHHHHH
T ss_pred HHHHHHHHhcCCChhH--HHHHHHHHHHccHHHHHHHHHhccCCCHHHHHH
Confidence 7766544322221000 013334445566666777777664 5555544
No 80
>1c1g_A Tropomyosin; contractIle protein; 7.00A {Sus scrofa} SCOP: h.1.5.1 PDB: 2tma_A 2w49_A 2w4u_A
Probab=97.61 E-value=0.064 Score=52.82 Aligned_cols=19 Identities=5% Similarity=-0.031 Sum_probs=7.3
Q ss_pred HHHHHHhhhhhhhhhhhhh
Q 006114 240 KKIAELNKKLEDEHACFEG 258 (660)
Q Consensus 240 ~~~~~~~~~~~~~~~~~~~ 258 (660)
..+..+..+++.-..+...
T Consensus 181 ~~~~~~~~~~~~~~~~~~~ 199 (284)
T 1c1g_A 181 ERAELSEGKCAELEEEIKT 199 (284)
T ss_dssp HHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 3334444444333333333
No 81
>1c1g_A Tropomyosin; contractIle protein; 7.00A {Sus scrofa} SCOP: h.1.5.1 PDB: 2tma_A 2w49_A 2w4u_A
Probab=97.56 E-value=0.076 Score=52.25 Aligned_cols=8 Identities=50% Similarity=0.385 Sum_probs=3.2
Q ss_pred hhHHHHHH
Q 006114 341 AIEYELVK 348 (660)
Q Consensus 341 kLe~E~~~ 348 (660)
.+..++..
T Consensus 269 ~~~~~~~~ 276 (284)
T 1c1g_A 269 AISEELDH 276 (284)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHH
Confidence 34444433
No 82
>3b2a_A TON_1937, putative uncharacterized protein; heat-repeats, hypothetical, unknown function; 2.20A {Thermococcus onnurineus}
Probab=97.52 E-value=0.0013 Score=65.82 Aligned_cols=176 Identities=13% Similarity=0.042 Sum_probs=129.0
Q ss_pred CCHHHHHHHHccCCCHHHHHHHHHHHHHhhcC-chhHHHHHhcCccHHHHHhhcCCCCHHHHHHHHHHHHHHh-cChhHH
Q 006114 448 GGLDALLLLLRTSQNTTILRVASGAIANLAMN-EMNQGLIMSRGGGQLLAKTASKTDDPQTLRMVAGALANLC-GNEKLH 525 (660)
Q Consensus 448 GgI~~Lv~LL~~s~d~~v~~~Aa~AL~nLA~~-~~n~~~Ive~g~I~~Ll~LL~~s~d~~v~~~Aa~aLanLa-~~~~~r 525 (660)
+.+..|+.+|. +.|+.++..|..+|..+-.. |+.-....-..++|.++.++.+ .|..+...|+.||..|- ..|-.-
T Consensus 33 ~~l~~L~~LL~-dkD~~vk~raL~~LeellK~~~~~l~~~~~e~~Ld~iI~llk~-~dEkval~A~r~L~~LLe~vpL~~ 110 (265)
T 3b2a_A 33 RALFLILELAG-EDDETTRLRAFVALGEILKRADSDLRMMVLERHLDVFINALSQ-ENEKVTIKALRALGYLVKDVPMGS 110 (265)
T ss_dssp HHHHHHHHHTT-SSCHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHTCCS-TTHHHHHHHHHHHHHHHTTCCBCH
T ss_pred hHHHHHHHHHh-ccchHHHHHHHHHHHHHHHhccccccHHHHHHHHHHHHHHHhc-cchhHHHHHHHHHHHHHcCCCCCH
Confidence 35788899996 88999999999999999765 3433344445579999999964 88899999999999887 333333
Q ss_pred HHHHhccHHHHHHHHhcCCCHHHHHHHHHHHHHhhccchhhhhhcchhhhHHHhhcChHHHHHHhhcCCCHHHHHHHHHH
Q 006114 526 TMLEEDGAIKALLAMVRSGNIDVIAQVARGLANFAKCESRAIVQGQRKGRSHLMEDSALEWLIANSKTNSASTRRHVELA 605 (660)
Q Consensus 526 ~~iv~~G~V~~Lv~lL~s~~~~v~~~Al~aLanLA~~~~~~~aq~~~e~r~~Li~~G~v~~Lv~lL~s~d~~vr~~Aa~A 605 (660)
..+. .++.+|.+++.++++-+...|+.+++-+---+ ...+++.++..++.+.+..++.+|..+
T Consensus 111 ~~y~--Kl~~aL~dlik~~~~il~~eaae~Lgklkv~~---------------~~~~V~~~l~sLl~Skd~~vK~agl~~ 173 (265)
T 3b2a_A 111 KTFL--KAAKTLVSLLESPDDMMRIETIDVLSKLQPLE---------------DSKLVRTYINELVVSPDLYTKVAGFCL 173 (265)
T ss_dssp HHHH--HHHHHHHHHTTSCCHHHHHHHHHHHHHCCBSC---------------CCHHHHHHHHHHHTCSSHHHHHHHHHH
T ss_pred HHHH--HHHHHHHHHhcCCCchHHHHHHHHhCcCCccc---------------chHHHHHHHHHHHhCCChhHHHHHHHH
Confidence 3333 35678899999999999999999999883211 124578899999999999999999999
Q ss_pred HHHhhcCC---ccHHHHHhcCcHHHHHHHHhcCChHHHHHHHHHHH
Q 006114 606 LCHLAQNE---DNARDFISRGGAKELVQISIESSREDIRNLAKKTM 648 (660)
Q Consensus 606 L~nLa~~~---e~~~~Ive~G~l~~Lv~lL~s~s~~~ir~~A~~~L 648 (660)
|.+++..+ +... +++..+-.++.+. ++.++..|...|
T Consensus 174 L~eia~~S~D~~i~~-----~I~~eI~elL~~e-D~~l~e~aLd~L 213 (265)
T 3b2a_A 174 FLNMLNSSADSGHLT-----LILDEIPSLLQND-NEFIVELALDVL 213 (265)
T ss_dssp HHHHGGGCSSCCCGG-----GTTTTHHHHHTCS-CHHHHHHHHHHH
T ss_pred HHHhhcccCCHHHHH-----HHHHHHHHHHcCC-CHHHHHHHHHHH
Confidence 99998754 3222 2334445555554 455666665443
No 83
>2qk1_A Protein STU2; STU2P, XMAP215, DIS1, TOG, CH-TOG, heat repeat, microtubule plus END, +TIP, protein binding; 1.70A {Saccharomyces cerevisiae}
Probab=97.34 E-value=0.002 Score=65.19 Aligned_cols=149 Identities=9% Similarity=0.020 Sum_probs=106.8
Q ss_pred HHHHHHhh-CCCCHHHHHHHHHHHHHhhC--C-chhH-HHHHHcCCHHHHHHHHccCCCHHHHHHHHHHHHHhhcC-chh
Q 006114 409 LPKILQLL-TSEDPDVQIHAVKVVANLAA--E-DINQ-EKIVEEGGLDALLLLLRTSQNTTILRVASGAIANLAMN-EMN 482 (660)
Q Consensus 409 I~~LV~LL-~s~d~~vr~~Aa~aL~nLa~--~-~en~-~~Ive~GgI~~Lv~LL~~s~d~~v~~~Aa~AL~nLA~~-~~n 482 (660)
+..|...+ ...+..++..|+.+|+.|+. . +... ..... .+|.++..+. +..+.|+..+..+|-+++.+ ++.
T Consensus 62 ~~~L~~~l~~D~n~~v~~~A~~al~~la~~l~~~~f~~~y~~~--llp~ll~~l~-dkk~~V~~aa~~al~~i~~~~~~~ 138 (249)
T 2qk1_A 62 LGIYGHIIQKDANIQAVALAAQSVELICDKLKTPGFSKDYVSL--VFTPLLDRTK-EKKPSVIEAIRKALLTICKYYDPL 138 (249)
T ss_dssp HHHHHHHHHHCSCHHHHHHHHHHHHHHHHHHCTTTSCHHHHHH--HHHHHHHGGG-CCCHHHHHHHHHHHHHHHHHSCTT
T ss_pred HHHHHHHhccCCCHHHHHHHHHHHHHHHHhcccccccHHHHHH--HHHHHHHHHc-CCCHHHHHHHHHHHHHHHHHcccc
Confidence 44555667 68899999999999999986 3 3333 33333 4899999997 66788999999998888754 111
Q ss_pred HHHHHhcCccHHHHHhhcCCCCHHHHHHHHHHHHHHhc-ChhH-HH--HHHhccHHHHHHHHhcCCCHHHHHHHHHHHHH
Q 006114 483 QGLIMSRGGGQLLAKTASKTDDPQTLRMVAGALANLCG-NEKL-HT--MLEEDGAIKALLAMVRSGNIDVIAQVARGLAN 558 (660)
Q Consensus 483 ~~~Ive~g~I~~Ll~LL~~s~d~~v~~~Aa~aLanLa~-~~~~-r~--~iv~~G~V~~Lv~lL~s~~~~v~~~Al~aLan 558 (660)
...-.-...++.|+..|.+ .++.++..++.+|..++. .+.. .. ..+....+|.|..++..+++.|+..|+.+|+.
T Consensus 139 ~~~~~l~~ll~~l~~~l~~-k~~~vk~~al~~l~~~~~~~~~~~~~l~~~l~~~iip~l~~~l~D~~~~VR~aA~~~l~~ 217 (249)
T 2qk1_A 139 ASSGRNEDMLKDILEHMKH-KTPQIRMECTQLFNASMKEEKDGYSTLQRYLKDEVVPIVIQIVNDTQPAIRTIGFESFAI 217 (249)
T ss_dssp CTTCTTHHHHHHHHHHTTC-SSHHHHHHHHHHHHHHHHHCCSCSHHHHHHHTTTHHHHHHHHHTCSSHHHHHHHHHHHHH
T ss_pred ccCCcHHHHHHHHHHHHcC-CChHHHHHHHHHHHHHHHHcCCcchhHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHH
Confidence 1000011356777888864 689999999999998872 2211 11 12225789999999999999999999999999
Q ss_pred hhc
Q 006114 559 FAK 561 (660)
Q Consensus 559 LA~ 561 (660)
++.
T Consensus 218 i~~ 220 (249)
T 2qk1_A 218 LIK 220 (249)
T ss_dssp HHH
T ss_pred HHH
Confidence 884
No 84
>3tjz_B Coatomer subunit gamma; protein trafficking, golgi membrane, protein transport-prote binding complex; HET: GNP; 2.90A {Bos taurus}
Probab=97.32 E-value=0.0067 Score=64.76 Aligned_cols=138 Identities=12% Similarity=0.067 Sum_probs=107.0
Q ss_pred HHHHHHhhCCCCHHHHHHHHHHHHHhhCCchhHHHHHHcCCHHHHHHHHccCCCHHHHHHHHHHHHHhhcCchhHHHHHh
Q 006114 409 LPKILQLLTSEDPDVQIHAVKVVANLAAEDINQEKIVEEGGLDALLLLLRTSQNTTILRVASGAIANLAMNEMNQGLIMS 488 (660)
Q Consensus 409 I~~LV~LL~s~d~~vr~~Aa~aL~nLa~~~en~~~Ive~GgI~~Lv~LL~~s~d~~v~~~Aa~AL~nLA~~~~n~~~Ive 488 (660)
.+.++.++.++|...++-..-.+.+++..++.. | =++..|..=+. ++++-++..|.++|++|....- .
T Consensus 70 f~~v~kl~~s~d~~lKrLvYLyl~~~~~~~~e~--i---Lv~Nsl~kDl~-~~N~~iR~lALRtL~~I~~~~m-~----- 137 (355)
T 3tjz_B 70 FFAMTKLFQSNDPTLRRMCYLTIKEMSCIAEDV--I---IVTSSLTKDMT-GKEDSYRGPAVRALCQITDSTM-L----- 137 (355)
T ss_dssp HHHHHGGGGCCCHHHHHHHHHHHHHHTTTSSCG--G---GGHHHHHHHHH-SSCHHHHHHHHHHHHHHCCTTT-H-----
T ss_pred HHHHHHHhcCCCHHHHHHHHHHHHHhCCCHHHH--H---HHHHHHHhhcC-CCcHhHHHHHHHHHhcCCCHHH-H-----
Confidence 345667899999999999999998888863221 1 14667777776 7899999999999999965432 1
Q ss_pred cCccHHHHHhhcCCCCHHHHHHHHHHHHHHh-cChhHHHHHHhccHHHHHHHHhcCCCHHHHHHHHHHHHHhhccch
Q 006114 489 RGGGQLLAKTASKTDDPQTLRMVAGALANLC-GNEKLHTMLEEDGAIKALLAMVRSGNIDVIAQVARGLANFAKCES 564 (660)
Q Consensus 489 ~g~I~~Ll~LL~~s~d~~v~~~Aa~aLanLa-~~~~~r~~iv~~G~V~~Lv~lL~s~~~~v~~~Al~aLanLA~~~~ 564 (660)
....+.+...+.+ .+|-|+..|+.+...|. .+|+. ++ +.++.+.+++.+.++-|+.+|+.+|..++..+.
T Consensus 138 ~~l~~~lk~~L~d-~~pyVRk~A~l~~~kL~~~~pe~----v~-~~~~~l~~ll~d~n~~V~~~Al~lL~ei~~~d~ 208 (355)
T 3tjz_B 138 QAIERYMKQAIVD-KVPSVSSSALVSSLHLLKCSFDV----VK-RWVNEAQEAASSDNIMVQYHALGLLYHVRKNDR 208 (355)
T ss_dssp HHHHHHHHHHHTC-SSHHHHHHHHHHHHHHTTTCHHH----HH-TTHHHHHHHTTCSSHHHHHHHHHHHHHHHTTCH
T ss_pred HHHHHHHHHHcCC-CCHHHHHHHHHHHHHHhccCHHH----HH-HHHHHHHHHhcCCCccHHHHHHHHHHHHHhhch
Confidence 1245667777765 89999999999999887 44543 33 689999999999999999999999999986543
No 85
>3tjz_B Coatomer subunit gamma; protein trafficking, golgi membrane, protein transport-prote binding complex; HET: GNP; 2.90A {Bos taurus}
Probab=97.28 E-value=0.0031 Score=67.30 Aligned_cols=198 Identities=11% Similarity=0.051 Sum_probs=118.2
Q ss_pred HHHHHHhhCCCCHHHHHHHHHHHHHhhCCchhHHHHHHcCCHHHHHHHHccCCCHHHHHHHHHHHHHhhcC-chhHHHHH
Q 006114 409 LPKILQLLTSEDPDVQIHAVKVVANLAAEDINQEKIVEEGGLDALLLLLRTSQNTTILRVASGAIANLAMN-EMNQGLIM 487 (660)
Q Consensus 409 I~~LV~LL~s~d~~vr~~Aa~aL~nLa~~~en~~~Ive~GgI~~Lv~LL~~s~d~~v~~~Aa~AL~nLA~~-~~n~~~Iv 487 (660)
+..|..=++++++-+|..|+++|++|...+-.. ...+++...|. +.+|-|+..|+.+...|... |+ ++
T Consensus 106 ~Nsl~kDl~~~N~~iR~lALRtL~~I~~~~m~~------~l~~~lk~~L~-d~~pyVRk~A~l~~~kL~~~~pe----~v 174 (355)
T 3tjz_B 106 TSSLTKDMTGKEDSYRGPAVRALCQITDSTMLQ------AIERYMKQAIV-DKVPSVSSSALVSSLHLLKCSFD----VV 174 (355)
T ss_dssp HHHHHHHHHSSCHHHHHHHHHHHHHHCCTTTHH------HHHHHHHHHHT-CSSHHHHHHHHHHHHHHTTTCHH----HH
T ss_pred HHHHHhhcCCCcHhHHHHHHHHHhcCCCHHHHH------HHHHHHHHHcC-CCCHHHHHHHHHHHHHHhccCHH----HH
Confidence 455555666899999999999999987754221 13566777886 88999999999999988654 44 22
Q ss_pred hcCccHHHHHhhcCCCCHHHHHHHHHHHHHHhcChhHHHHHHhccHHHHHHHHhcCC---CHHHHHHHHHHHHHhhccc-
Q 006114 488 SRGGGQLLAKTASKTDDPQTLRMVAGALANLCGNEKLHTMLEEDGAIKALLAMVRSG---NIDVIAQVARGLANFAKCE- 563 (660)
Q Consensus 488 e~g~I~~Ll~LL~~s~d~~v~~~Aa~aLanLa~~~~~r~~iv~~G~V~~Lv~lL~s~---~~~v~~~Al~aLanLA~~~- 563 (660)
.+.+..+-.++.+ .+|.|+..|.++|..++..+.. ++..|+..+... ++-.+...++.++.++..+
T Consensus 175 -~~~~~~l~~ll~d-~n~~V~~~Al~lL~ei~~~d~~--------a~~kLv~~l~~~~l~~~~~q~~llr~l~~~~~~d~ 244 (355)
T 3tjz_B 175 -KRWVNEAQEAASS-DNIMVQYHALGLLYHVRKNDRL--------AVSKMISKFTRHGLKSPFAYCMMIRVASRQLEDED 244 (355)
T ss_dssp -HTTHHHHHHHTTC-SSHHHHHHHHHHHHHHHTTCHH--------HHHHHHHHHHSSCCSCHHHHHHHHHHHTCC-----
T ss_pred -HHHHHHHHHHhcC-CCccHHHHHHHHHHHHHhhchH--------HHHHHHHHHhcCCCcChHHHHHHHHHHHHhccccc
Confidence 3678888888865 7899999999999999864321 344445444432 4544444455544444322
Q ss_pred hhhhhhcchhhhHHHhhcChHHHHHHhhcCCCHHHHHHHHHHHHHhhcCCccHHHHHhcCcHHHHHHHHhcCChHHHHHH
Q 006114 564 SRAIVQGQRKGRSHLMEDSALEWLIANSKTNSASTRRHVELALCHLAQNEDNARDFISRGGAKELVQISIESSREDIRNL 643 (660)
Q Consensus 564 ~~~~aq~~~e~r~~Li~~G~v~~Lv~lL~s~d~~vr~~Aa~AL~nLa~~~e~~~~Ive~G~l~~Lv~lL~s~s~~~ir~~ 643 (660)
+. .....++.+...+++.++.|.-.|+.+++.+...+.. + ...++..|..++.++++ .+|=.
T Consensus 245 ~~-------------~~~~~~~~l~~~L~~~~~aVvyEa~k~I~~l~~~~~~---~-~~~a~~~L~~fLss~d~-niryv 306 (355)
T 3tjz_B 245 GS-------------RDSPLFDFIESCLRNKHEMVVYEAASAIVNLPGCSAK---E-LAPAVSVLQLFCSSPKA-ALRYA 306 (355)
T ss_dssp -------------------------CCCCCSSHHHHHHHHHHHTC---------------CCCTHHHHHHSSSS-SSHHH
T ss_pred hh-------------hHHHHHHHHHHHHcCCChHHHHHHHHHHHhccCCCHH---H-HHHHHHHHHHHHcCCCc-hHHHH
Confidence 11 1234566777778888899998899998887552211 1 12344556666665443 33434
Q ss_pred HH
Q 006114 644 AK 645 (660)
Q Consensus 644 A~ 645 (660)
|.
T Consensus 307 aL 308 (355)
T 3tjz_B 307 AV 308 (355)
T ss_dssp HH
T ss_pred HH
Confidence 44
No 86
>1ho8_A Vacuolar ATP synthase subunit H; heat repeat, hydrolase; 2.95A {Saccharomyces cerevisiae} SCOP: a.118.1.9
Probab=97.27 E-value=0.033 Score=61.32 Aligned_cols=224 Identities=14% Similarity=0.099 Sum_probs=134.7
Q ss_pred CCHHHHHHhhC-CCCHHHHHHHHHHHHHhhCCch---hH-HHHHHcCCH-HHHHHHHccCCCHHHHHHHHHHHHHhhcC-
Q 006114 407 VGLPKILQLLT-SEDPDVQIHAVKVVANLAAEDI---NQ-EKIVEEGGL-DALLLLLRTSQNTTILRVASGAIANLAMN- 479 (660)
Q Consensus 407 ggI~~LV~LL~-s~d~~vr~~Aa~aL~nLa~~~e---n~-~~Ive~GgI-~~Lv~LL~~s~d~~v~~~Aa~AL~nLA~~- 479 (660)
.++..++.+|. ..+.++....+..+..+...+. .+ ..+.+.... ..+...+...+++-....++.++..++..
T Consensus 77 ~~~~~~l~lL~~~~~~d~vqYvL~Li~DlL~~~~~~~~~~~~f~~~~~~~~~l~~~~~~~dd~~~ll~a~~l~~ll~~~~ 156 (480)
T 1ho8_A 77 KTLIPLIHLLSTSDNEDCKKSVQNLIAELLSSDKYGDDTVKFFQEDPKQLEQLFDVSLKGDFQTVLISGFNVVSLLVQNG 156 (480)
T ss_dssp TTHHHHHHHHHSCCCHHHHHHHHHHHHHHHHCSSSSHHHHHHHHHCTTHHHHHHHHCSCSSHHHHHHHHHHHHHHHTSTT
T ss_pred hHHHHHHHHHhhcChHHHHHHHHHHHHHHHhcCcchHHHHHHHhhCcccchHHHHHHhcccchHHHHHHHHHHHHHhccC
Confidence 46788888887 5678888888888888777433 33 333444332 22444333344444555566665655432
Q ss_pred chhHHHHHhcCccH--HHHHhhcCCCCHHHHHHHHHHHHHHhcChhHHHHHHhccH--HHHHHHHhcC------------
Q 006114 480 EMNQGLIMSRGGGQ--LLAKTASKTDDPQTLRMVAGALANLCGNEKLHTMLEEDGA--IKALLAMVRS------------ 543 (660)
Q Consensus 480 ~~n~~~Ive~g~I~--~Ll~LL~~s~d~~v~~~Aa~aLanLa~~~~~r~~iv~~G~--V~~Lv~lL~s------------ 543 (660)
+...+.+- +.+. -++..|....+.+.+..++.+|..|...+..|..+...++ +|.++.++..
T Consensus 157 ~~~~~~l~--~l~~~~~~~~~L~~~~~~~~~~i~v~~L~~Ll~~~~~R~~f~~~~~~~~~~l~~il~~~~~~~~~~~~~~ 234 (480)
T 1ho8_A 157 LHNVKLVE--KLLKNNNLINILQNIEQMDTCYVCIRLLQELAVIPEYRDVIWLHEKKFMPTLFKILQRATDSQLATRIVA 234 (480)
T ss_dssp TCCHHHHH--HHHHCHHHHHHHHCTTCHHHHHHHHHHHHHHHTSHHHHHHHHTTHHHHHHHHHHHHHHHHC---------
T ss_pred CccHhHHH--HHhhhHHHHHHhccccCCchHHHHHHHHHHHhcchhHHHHHHHcccchhHHHHHHHHHhhcccccccccc
Confidence 22111110 1112 3445555434556677788999999999999999987543 6777654431
Q ss_pred ---C--CHHHHHHHHHHHHHhhccchhhhhhcchhhhHHHhhcChH--HHHHHhhcCC-CHHHHHHHHHHHHHhhcCC--
Q 006114 544 ---G--NIDVIAQVARGLANFAKCESRAIVQGQRKGRSHLMEDSAL--EWLIANSKTN-SASTRRHVELALCHLAQNE-- 613 (660)
Q Consensus 544 ---~--~~~v~~~Al~aLanLA~~~~~~~aq~~~e~r~~Li~~G~v--~~Lv~lL~s~-d~~vr~~Aa~AL~nLa~~~-- 613 (660)
+ +..++..++.|++-+++.. .....+...+.. +.|+..++.. -..|-+.+..+|.||....
T Consensus 235 ~~~~~~~~Ql~Y~~ll~iWlLSF~~---------~~~~~l~~~~i~~~~~L~~i~k~s~KEKvvRv~la~l~Nll~~~~~ 305 (480)
T 1ho8_A 235 TNSNHLGIQLQYHSLLLIWLLTFNP---------VFANELVQKYLSDFLDLLKLVKITIKEKVSRLCISIILQCCSTRVK 305 (480)
T ss_dssp ----CCHHHHHHHHHHHHHHHTTSH---------HHHHHHHTTSHHHHHHHHHHHHHCCSHHHHHHHHHHHHHTTSSSST
T ss_pred ccCCCccHHHHHHHHHHHHHHHcCH---------HHHHHHHhcchHHHHHHHHHHHhhccchhHHHHHHHHHHHhcccch
Confidence 1 2456899999999999763 233445555543 5666767654 5889999999999998754
Q ss_pred ---ccHHH-HHhcCcHHHHHHHHhcC--ChHHHHH
Q 006114 614 ---DNARD-FISRGGAKELVQISIES--SREDIRN 642 (660)
Q Consensus 614 ---e~~~~-Ive~G~l~~Lv~lL~s~--s~~~ir~ 642 (660)
..... ++-.+++ +++..+... +++++.+
T Consensus 306 ~~~~~~~~~~~~~~~l-~~l~~L~~rk~~Dedl~e 339 (480)
T 1ho8_A 306 QHKKVIKQLLLLGNAL-PTVQSLSERKYSDEELRQ 339 (480)
T ss_dssp THHHHHHHHHHHHCHH-HHHHHHHSSCCSSHHHHH
T ss_pred hhhhHHHHHHHHccch-HHHHHHhhCCCCcHHHHH
Confidence 22232 3334554 455555443 5555433
No 87
>2db0_A 253AA long hypothetical protein; heat repeats, helical structure, structural genomics; 2.20A {Pyrococcus horikoshii}
Probab=97.18 E-value=0.024 Score=54.97 Aligned_cols=179 Identities=17% Similarity=0.157 Sum_probs=124.7
Q ss_pred cCCHHHHHHHHccCCCHHHHHHHHHHHHHhhcC-chhHHHHHhcCccHHHHHhhcCCCCHHHHHHHHHHHHHHh-cChhH
Q 006114 447 EGGLDALLLLLRTSQNTTILRVASGAIANLAMN-EMNQGLIMSRGGGQLLAKTASKTDDPQTLRMVAGALANLC-GNEKL 524 (660)
Q Consensus 447 ~GgI~~Lv~LL~~s~d~~v~~~Aa~AL~nLA~~-~~n~~~Ive~g~I~~Ll~LL~~s~d~~v~~~Aa~aLanLa-~~~~~ 524 (660)
...+..++..|. +.-=.|+.+|...+.+++.. |+....+ +..|+.+++.+.........+.+++.++ ..|+.
T Consensus 31 ~~~l~~lI~~LD-DDlwtV~kNAl~vi~~i~~~~~el~epl-----~~kL~vm~~ksEaIpltqeIa~a~G~la~i~Pe~ 104 (253)
T 2db0_A 31 ESVLKKLIELLD-DDLWTVVKNAISIIMVIAKTREDLYEPM-----LKKLFSLLKKSEAIPLTQEIAKAFGQMAKEKPEL 104 (253)
T ss_dssp HHHHHHHHHHTT-CSCHHHHHHHHHHHHHHHTTCGGGHHHH-----HHHHHHHHHHCCSHHHHHHHHHHHHHHHHHCHHH
T ss_pred HHHHHHHHHHhc-cHHHHHHHhHHHHHHHHHHHhHHHHHHH-----HHHHHHHHhhcccCchHHHHHHHHhHHHHhCHHH
Confidence 345888999996 44557999999999999876 7755544 3456667776777777777888888887 44433
Q ss_pred HHHHHhccHHHHHHHHhcCCCHHHHHHHHHHHHHhhccchhhhhhcchhhhHHHhhcChHHHHHHhhcCCCHHHHHHHHH
Q 006114 525 HTMLEEDGAIKALLAMVRSGNIDVIAQVARGLANFAKCESRAIVQGQRKGRSHLMEDSALEWLIANSKTNSASTRRHVEL 604 (660)
Q Consensus 525 r~~iv~~G~V~~Lv~lL~s~~~~v~~~Al~aLanLA~~~~~~~aq~~~e~r~~Li~~G~v~~Lv~lL~s~d~~vr~~Aa~ 604 (660)
++ +.||.|..-.+-+++.++.+...+|..++..+|+.. .+++.-+..++.+++..=+-.|..
T Consensus 105 ----v~-~vVp~lfanyrigd~kikIn~~yaLeeIaranP~l~-------------~~v~rdi~smltskd~~Dkl~aLn 166 (253)
T 2db0_A 105 ----VK-SMIPVLFANYRIGDEKTKINVSYALEEIAKANPMLM-------------ASIVRDFMSMLSSKNREDKLTALN 166 (253)
T ss_dssp ----HH-HHHHHHHHHSCCCSHHHHHHHHHHHHHHHHHCHHHH-------------HHHHHHHHHHTSCSSHHHHHHHHH
T ss_pred ----HH-hhHHHHHHHHhcCCccceecHHHHHHHHHHhChHHH-------------HHHHHHHHHHhcCCChHHHHHHHH
Confidence 32 677888888888899999999999999998877533 346667788888888766766666
Q ss_pred HHHHhhcCCccHHHHHhcCcHHHHHHHHhcCChHHHHHHHHHHHhcCcch
Q 006114 605 ALCHLAQNEDNARDFISRGGAKELVQISIESSREDIRNLAKKTMKSNPRL 654 (660)
Q Consensus 605 AL~nLa~~~e~~~~Ive~G~l~~Lv~lL~s~s~~~ir~~A~~~L~~~p~~ 654 (660)
.+..++.+. ...+. -.+|.|..++.+ .++..|.-|-++|.+....
T Consensus 167 Fi~alGen~---~~yv~-PfLprL~aLL~D-~deiVRaSaVEtL~~lA~~ 211 (253)
T 2db0_A 167 FIEAMGENS---FKYVN-PFLPRIINLLHD-GDEIVRASAVEALVHLATL 211 (253)
T ss_dssp HHHTCCTTT---HHHHG-GGHHHHHGGGGC-SSHHHHHHHHHHHHHHHTS
T ss_pred HHHHHhccC---ccccC-cchHHHHHHHcC-cchhhhHHHHHHHHHHHHc
Confidence 666655433 22222 256777777764 4455666666666443333
No 88
>2iw3_A Elongation factor 3A; acetylation, ATP-binding, protein biosynthesis, nucleotide-binding, phosphorylation, RNA- binding, rRNA-binding; HET: ADP; 2.4A {Saccharomyces cerevisiae} PDB: 2iwh_A* 2ix3_A 2ix8_A
Probab=97.18 E-value=0.03 Score=67.01 Aligned_cols=216 Identities=10% Similarity=0.061 Sum_probs=149.3
Q ss_pred CCHHHHHHhhCCCCHHHHHHHHHHHHHhhC-CchhHHHHHHcCCHHHHHHHHccCCCHHHHHHHHHHHHHhhcCchhHHH
Q 006114 407 VGLPKILQLLTSEDPDVQIHAVKVVANLAA-EDINQEKIVEEGGLDALLLLLRTSQNTTILRVASGAIANLAMNEMNQGL 485 (660)
Q Consensus 407 ggI~~LV~LL~s~d~~vr~~Aa~aL~nLa~-~~en~~~Ive~GgI~~Lv~LL~~s~d~~v~~~Aa~AL~nLA~~~~n~~~ 485 (660)
+.+|.++..+.+....|+..|..++..|+. -+.+.. ...+|.|+..|.++..=..+..|+.+|..|+.....+-.
T Consensus 95 ~~~~~~~~~~~dk~~~v~~aa~~~~~~~~~~~~~~a~----~~~~~~~~~~~~~~~kw~~k~~~l~~~~~~~~~~~~~~~ 170 (986)
T 2iw3_A 95 QLVPAICTNAGNKDKEIQSVASETLISIVNAVNPVAI----KALLPHLTNAIVETNKWQEKIAILAAFSAMVDAAKDQVA 170 (986)
T ss_dssp TTHHHHHHHTTCSSHHHHHHHHHHHHHHHHHSCGGGH----HHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHSHHHHH
T ss_pred HHHHHHHHHhcCCchHHHHHHHHHHHHHHHhCCHHHH----HHHHHHHHHHhccccchHHHHHHHHHHHHHHHHhHHHHH
Confidence 457888888888889999999988888776 333322 224899999997555667888999999999865333333
Q ss_pred HHhcCccHHHHHhhcCCCCHHHHHHHHHHHHHHhc---ChhHHHHHHhccHHHHHHHHhcCCCHHHHHHHHHHHHHhhcc
Q 006114 486 IMSRGGGQLLAKTASKTDDPQTLRMVAGALANLCG---NEKLHTMLEEDGAIKALLAMVRSGNIDVIAQVARGLANFAKC 562 (660)
Q Consensus 486 Ive~g~I~~Ll~LL~~s~d~~v~~~Aa~aLanLa~---~~~~r~~iv~~G~V~~Lv~lL~s~~~~v~~~Al~aLanLA~~ 562 (660)
..-..+||.+...+.+ ..++|...|..++..+|. |.+. ...+|.|+..+..++. .-.|+..|+.-++-
T Consensus 171 ~~~~~~~p~~~~~~~d-~k~~v~~~~~~~~~~~~~~~~n~d~------~~~~~~~~~~~~~p~~--~~~~~~~l~~~tfv 241 (986)
T 2iw3_A 171 LRMPELIPVLSETMWD-TKKEVKAAATAAMTKATETVDNKDI------ERFIPSLIQCIADPTE--VPETVHLLGATTFV 241 (986)
T ss_dssp HHHHHHHHHHHHHTTC-SSHHHHHHHHHHHHHHGGGCCCTTT------GGGHHHHHHHHHCTTH--HHHHHHHHTTCCCC
T ss_pred HhccchhcchHhhccc-CcHHHHHHHHHHHHHHHhcCCCcch------hhhHHHHHHHhcChhh--hHHHHHHhhcCeeE
Confidence 3336688999888876 578999999999888883 3333 2578999999987754 23334444333321
Q ss_pred c---hhhhhhcchhhhHHHhhcChHHHHHHhhcCCCHHHHHHHHHHHHHhhcCCc---cHHHHHhcCcHHHHHHHHhcCC
Q 006114 563 E---SRAIVQGQRKGRSHLMEDSALEWLIANSKTNSASTRRHVELALCHLAQNED---NARDFISRGGAKELVQISIESS 636 (660)
Q Consensus 563 ~---~~~~aq~~~e~r~~Li~~G~v~~Lv~lL~s~d~~vr~~Aa~AL~nLa~~~e---~~~~Ive~G~l~~Lv~lL~s~s 636 (660)
. +..+ .=.+|.|.+-|+.....+++.++-.+-|||.--+ .+..+ --..+|.|......-+
T Consensus 242 ~~v~~~~l-------------~~~~p~l~r~l~~~~~~~~r~~~~~~~n~~~lv~~~~~~~~f-~~~l~p~~~~~~~~~~ 307 (986)
T 2iw3_A 242 AEVTPATL-------------SIMVPLLSRGLNERETGIKRKSAVIIDNMCKLVEDPQVIAPF-LGKLLPGLKSNFATIA 307 (986)
T ss_dssp SCCCHHHH-------------HHHHHHHHHHHTSSSHHHHHHHHHHHHHHHTTCCCHHHHHHH-HTTTHHHHHHHTTTCC
T ss_pred eeecchhH-------------HHHHHHHHhhhccCcchhheeeEEEEcchhhhcCCHHHHhhh-hhhhhhHHHHHhhccC
Confidence 1 1111 1146777777888889999999999999997332 22222 3457888888888778
Q ss_pred hHHHHHHHHHHHh
Q 006114 637 REDIRNLAKKTMK 649 (660)
Q Consensus 637 ~~~ir~~A~~~L~ 649 (660)
.+..|..|.+.++
T Consensus 308 ~pe~r~~~~~a~~ 320 (986)
T 2iw3_A 308 DPEAREVTLRALK 320 (986)
T ss_dssp SHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHH
Confidence 8887777775553
No 89
>3dad_A FH1/FH2 domain-containing protein 1; formin, FHOD1, GTPase-binding domain, ubiquitin-superfold, armadillo repeats, actin-binding, coiled coil; 2.30A {Homo sapiens}
Probab=96.95 E-value=0.064 Score=56.46 Aligned_cols=186 Identities=13% Similarity=-0.002 Sum_probs=130.0
Q ss_pred HHHHHHccCCCHHHHHHHHHHHHH-hhcCchhHHHHHhcCccHHHHHhhcCCCCHHHHHHHHHHHHHHhcChhHHHHHH-
Q 006114 452 ALLLLLRTSQNTTILRVASGAIAN-LAMNEMNQGLIMSRGGGQLLAKTASKTDDPQTLRMVAGALANLCGNEKLHTMLE- 529 (660)
Q Consensus 452 ~Lv~LL~~s~d~~v~~~Aa~AL~n-LA~~~~n~~~Ive~g~I~~Ll~LL~~s~d~~v~~~Aa~aLanLa~~~~~r~~iv- 529 (660)
.++.-|. +.+...++.+.--|.. +..+.+....++..+|+..|+.+... .+...+..++.|+.+|..+..+-..++
T Consensus 122 ~iiekL~-~~~~~~lr~aLfsLk~~~q~D~~Fa~EFI~~~GL~~Li~vi~~-~~gN~q~Y~L~AL~~LM~~v~Gm~gvvs 199 (339)
T 3dad_A 122 AILEKLY-SSSGPELRRSLFSLKQIFQEDKDLVPEFVHSEGLSCLIRVGAA-ADHNYQSYILRALGQLMLFVDGMLGVVA 199 (339)
T ss_dssp HHHHHHH-HCCHHHHHHHHHHHHHHHHTCTTHHHHHHHTTHHHHHHHHHTT-SCHHHHHHHHHHHHHHTTSHHHHHHHHH
T ss_pred HHHHHHh-cCCcHHHHHHHHHHHHHhhcchHHHHHHHHhccHHHHHHHHHh-cChHHHHHHHHHHHHHHhccccccchhC
Confidence 3445555 3455556667777777 55678999999999999999999975 688999999999999998888887777
Q ss_pred hccHHHHHHHHhcCCCHHHHHHHHHHHHHhhccchhhhhhcchhhhHHHhhcC--hHHHHHHhhc---CCCHHHHHHHHH
Q 006114 530 EDGAIKALLAMVRSGNIDVIAQVARGLANFAKCESRAIVQGQRKGRSHLMEDS--ALEWLIANSK---TNSASTRRHVEL 604 (660)
Q Consensus 530 ~~G~V~~Lv~lL~s~~~~v~~~Al~aLanLA~~~~~~~aq~~~e~r~~Li~~G--~v~~Lv~lL~---s~d~~vr~~Aa~ 604 (660)
....|..|+.++.+.++.|...|+..|..++..++....--....+..-...| -.+.|+.+|. +.|..++.+|..
T Consensus 200 ~~~fI~~lyslv~s~~~~V~k~AL~LL~v~V~~se~~~~lv~~av~~v~~~~~~~p~~~Lv~~L~~~~~~D~elq~~amt 279 (339)
T 3dad_A 200 HSDTIQWLYTLCASLSRLVVKTALKLLLVFVEYSENNAPLFIRAVNSVASTTGAPPWANLVSILEEKNGADPELLVYTVT 279 (339)
T ss_dssp CHHHHHHHHHGGGCSCHHHHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHHHHCCCTTHHHHHHHTTTTSCCHHHHHHHHH
T ss_pred CHHHHHHHHHHHcCccHHHHHHHHHHHHHHHccCcccchHHHHHHHHhhhccCCCcHHHHHHHHhccCCCCHHHHHHHHH
Confidence 45788999999999999999999999999986653211100011111111122 3668888997 678889988776
Q ss_pred HHHHhhcC-C--ccHHH----HHhcCcHHHHHHHHhcC-ChHH
Q 006114 605 ALCHLAQN-E--DNARD----FISRGGAKELVQISIES-SRED 639 (660)
Q Consensus 605 AL~nLa~~-~--e~~~~----Ive~G~l~~Lv~lL~s~-s~~~ 639 (660)
.+-.+-.. + +.... +-+.|.-..+.+.+.+. ...+
T Consensus 280 LIN~lL~~apd~d~~~di~d~Le~~gi~~~i~r~l~~~~~~~~ 322 (339)
T 3dad_A 280 LINKTLAALPDQDSFYDVTDALEQQGMEALVQRHLGTAGTDVD 322 (339)
T ss_dssp HHHHHHHHCSSHHHHHHHHHHHHHTTHHHHHHHHHSCTTSCHH
T ss_pred HHHHHHhcCCChhHHHHHHHHHHHccHHHHHHHHHhccCCCHH
Confidence 66555322 2 22333 33567667778877765 3434
No 90
>3ol1_A Vimentin; structural genomics, PSI-2, protein structure initiative, no structural genomics consortium, NESG, structural protein; 2.81A {Homo sapiens} PDB: 3uf1_A
Probab=96.09 E-value=0.099 Score=47.00 Aligned_cols=100 Identities=19% Similarity=0.325 Sum_probs=55.8
Q ss_pred HHHHHhhhhhhhHHHHhhhhHHHHHHHHHhhhhhhhhhhhhHHHHHHHHHHHhhhhhhhhhhhhhhHHHHHHhhHHHHHH
Q 006114 102 DESMRNLVTRSEFLEKENAHLELEVEKILGELNHQKDQNNLKREKIVQLEISLKNSKQQQLDNSSYQKVLADTTQMYEKK 181 (660)
Q Consensus 102 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 181 (660)
...|..|..+...+..+|++|+.|++.+...+..-+.+-.. |+ + .-+..|.+
T Consensus 19 e~~I~~LR~qid~~~~e~a~l~leldn~~~~~edfk~KyE~--------E~------------~--------~r~~~E~d 70 (119)
T 3ol1_A 19 EEEMRELRRQVDQLTNDKARVEVERDNLAEDIMRLREKLQE--------EM------------L--------QREEAENT 70 (119)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--------HH------------H--------HHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHH--------HH------------H--------HHHHHHHH
Confidence 33344444444555889999999988877665443321100 00 0 11233455
Q ss_pred HHHHHHHHHHHHhhhhchHHHHHHHHHHHhhhhhhHHHHhhhhhHHHHHHhhHHHHHHHHHHHHhhhhh
Q 006114 182 ITELIKQLEIEHARSEGAEEQVDTMKKLISDNQKSIEQYEMENSTYQKALADTTQLYEKKIAELNKKLE 250 (660)
Q Consensus 182 ~~~l~~~l~~e~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~ 250 (660)
|.-|+|.+++.+-.+.-++-++. +++..|+=..+.|+..|.+|..|+.
T Consensus 71 i~~lrK~lD~~~l~r~dLE~~ie---------------------sL~eEl~FLKk~heeEl~eLq~qi~ 118 (119)
T 3ol1_A 71 LQSFRQDVDNASLARLDLERKVE---------------------SLQEEIAFLKKLHEEEIQELQAQIQ 118 (119)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHH---------------------HHHHHHHHHHHHHHHHHHHHHSCC-
T ss_pred HHHhhhcccHHHHHHHHHHHHHH---------------------HHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 55566666555555544444444 4444455555778888888887764
No 91
>3o0z_A RHO-associated protein kinase 1; coiled-coil, transferase; HET: MSE; 2.33A {Homo sapiens}
Probab=96.00 E-value=0.53 Score=44.55 Aligned_cols=148 Identities=22% Similarity=0.210 Sum_probs=102.7
Q ss_pred hHHHHHHHHHHHHHHHHHHhhhhchHHHHHHHHHHHhhhhhhHHHHhhhhhHHHHHHh---hHHHHHHHHHHHHhhhhhh
Q 006114 175 TQMYEKKITELIKQLEIEHARSEGAEEQVDTMKKLISDNQKSIEQYEMENSTYQKALA---DTTQLYEKKIAELNKKLED 251 (660)
Q Consensus 175 ~~~~~~~~~~l~~~l~~e~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~l~---~~~~~~~~~~~~~~~~~~~ 251 (660)
+..+++.+.|+...|..|. |-...|+++..++.+..++.+..|..++..++ ...-..++..+.|.-+|+-
T Consensus 8 i~~LekQL~E~n~kLk~Es-------E~~~rlkK~~tEl~k~~~~~E~~~rELq~~~~~L~~~k~~Leke~~~LQa~L~q 80 (168)
T 3o0z_A 8 LSQLQKQLEEANDLLRTES-------DTAVRLRKSHTEMSKSISQLESLNRELQERNRILENSKSQTDKDYYQLQAILEA 80 (168)
T ss_dssp --CTHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHhH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444555555555555444 55677888888888777777777777766544 2334577777788888887
Q ss_pred hhhhhhhhHHhHHHHHHHhhhhhccccchhHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHhhhhcc----HHHHH
Q 006114 252 EHACFEGAVEQLDMVKKLLSDYQNSNQGQKEVHELCVKLKETRQLHESAVYEVQTLKSEYKNLLEEKETMS----DELQA 327 (660)
Q Consensus 252 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~Lk~~Le~e~~~~e~~e~E~~~lks~l~~l~~~~~~~~----eel~~ 327 (660)
|..-...+.+-. .|.|. -+..|...+++......+++.+.+.|+-.+..+-...++.+ =++..
T Consensus 81 Er~~r~q~se~~-------~elq~------ri~~L~~El~~~k~~~~k~~~e~r~L~Ekl~~lEKe~a~~eid~~~eLKa 147 (168)
T 3o0z_A 81 ERRDRGHDSEMI-------GDLQA------RITSLQEEVKHLKHNLEKVEGERKEAQDMLNHSEKEKNNLEIDLNYKLKS 147 (168)
T ss_dssp HHHHHHHHHHHH-------HHHHH------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHH-------HHHHH------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHH
Confidence 776554443333 33322 56778888889999999999999999999999888888887 56888
Q ss_pred HHHHHHHHHHHhhhh
Q 006114 328 ARQRLLVEEKQRKAI 342 (660)
Q Consensus 328 ~~k~l~~e~~~rkkL 342 (660)
+..+++.|+...+..
T Consensus 148 lQ~~~eqE~~~H~~T 162 (168)
T 3o0z_A 148 LQQRLEQEVNEHKVT 162 (168)
T ss_dssp HHHHHHHHHHHHCC-
T ss_pred HHHHHHHHHHHHHHH
Confidence 888888888655543
No 92
>4ffb_C Protein STU2; tubulin fold, heat repeats, cytoskeleton, microtubule, tubul domain, hydrolase; HET: GTP; 2.88A {Saccharomyces cerevisiae}
Probab=95.91 E-value=0.14 Score=51.88 Aligned_cols=192 Identities=12% Similarity=0.095 Sum_probs=118.7
Q ss_pred CHHHHHHhhCCCCHHHHHHHHHHHHHhhCCch-h--HHHHH-HcCC-HHHHHHHHccCCCHHHHHHHHHHHHHhhcC--c
Q 006114 408 GLPKILQLLTSEDPDVQIHAVKVVANLAAEDI-N--QEKIV-EEGG-LDALLLLLRTSQNTTILRVASGAIANLAMN--E 480 (660)
Q Consensus 408 gI~~LV~LL~s~d~~vr~~Aa~aL~nLa~~~e-n--~~~Iv-e~Gg-I~~Lv~LL~~s~d~~v~~~Aa~AL~nLA~~--~ 480 (660)
-+| |-.-|.|.+...|..|+..|..+..... . ..... ..+. ++.+-..+. +.|..+...++.+|..++.. +
T Consensus 11 klp-l~e~l~sk~WK~R~eale~l~~~~~~~~~~~~~~~~~~~~~~~~~~lkk~l~-DsN~~v~~~al~~l~~~~~~~~~ 88 (278)
T 4ffb_C 11 TLP-LEERLTYKLWKARLEAYKELNQLFRNSVGDISRDDNIQIYWRDPTLFAQYIT-DSNVVAQEQAIVALNSLIDAFAS 88 (278)
T ss_dssp CCC-HHHHTTCSSHHHHHHHHHHHHHHHHTC----------CCTTSCTHHHHHHTT-CSSHHHHHHHHHHHHHHHTTCC-
T ss_pred cCC-HHHhcccCcHHHHHHHHHHHHHHHhhCcccccchhHHHHHHHHHHHHHHHhc-cchHHHHHHHHHHHHHHHHHhhh
Confidence 355 5577889999999999999988665321 1 11111 1233 445556665 88999999999999988754 1
Q ss_pred h-h-H--HHHHhcCccHHHHH-hhcCCCCHHHHHHHHHHHHHHhcChhHHHHHHhccHHHHHHHHhcCCCHHHHHHHHHH
Q 006114 481 M-N-Q--GLIMSRGGGQLLAK-TASKTDDPQTLRMVAGALANLCGNEKLHTMLEEDGAIKALLAMVRSGNIDVIAQVARG 555 (660)
Q Consensus 481 ~-n-~--~~Ive~g~I~~Ll~-LL~~s~d~~v~~~Aa~aLanLa~~~~~r~~iv~~G~V~~Lv~lL~s~~~~v~~~Al~a 555 (660)
. . + ....-..++|.|+. ++. +..+.++..|..++..++....... -++..++..+.+.+|.++..++..
T Consensus 89 ~~~~~~~~~~~~~~~l~~lveK~l~-~~k~~~~~~a~~~l~~~~~~~~~~~-----~~~e~l~~~l~~Knpkv~~~~l~~ 162 (278)
T 4ffb_C 89 SSLKNAHNITLISTWTPLLVEKGLT-SSRATTKTQSMSCILSLCGLDTSIT-----QSVELVIPFFEKKLPKLIAAAANC 162 (278)
T ss_dssp --CCHHHHHHHHHHHHHHHHHHTSS-CCCHHHHHHHHHHHHHHHHTSSSSH-----HHHHHHGGGGGCSCHHHHHHHHHH
T ss_pred hhcccchhHHHHHHHHHHHHHHHhc-CccHHHHHHHHHHHHHHHHhcCcHH-----HHHHHHHHHHhccCHHHHHHHHHH
Confidence 1 1 1 12223446677775 354 3677888888877776652211111 234567777889999999999999
Q ss_pred HHHhhccchhhhhhcchhhhHHHhhcChHHHHHHhhcCCCHHHHHHHHHHHHHhhcCC
Q 006114 556 LANFAKCESRAIVQGQRKGRSHLMEDSALEWLIANSKTNSASTRRHVELALCHLAQNE 613 (660)
Q Consensus 556 LanLA~~~~~~~aq~~~e~r~~Li~~G~v~~Lv~lL~s~d~~vr~~Aa~AL~nLa~~~ 613 (660)
|..+...-. ....-....-..+++.+..++.+.++.||..|..++..+..+-
T Consensus 163 l~~~l~~fg------~~~~~~k~~l~~i~~~l~k~l~d~~~~VR~aA~~l~~~ly~~~ 214 (278)
T 4ffb_C 163 VYELMAAFG------LTNVNVQTFLPELLKHVPQLAGHGDRNVRSQTMNLIVEIYKVT 214 (278)
T ss_dssp HHHHHHHHT------TTTCCHHHHHHHHGGGHHHHHTCSSHHHHHHHHHHHHHHHTC-
T ss_pred HHHHHHHhC------CCcCCchhHHHHHHHHHHHHHhCCcHHHHHHHHHHHHHHHHHh
Confidence 987652100 0000000001124456677889999999999999998886543
No 93
>3ebb_A Phospholipase A2-activating protein; armadillo repeat, structural genomics consortium, SGC, WD repeat, acetylation, ATP-binding; 1.90A {Homo sapiens}
Probab=95.77 E-value=0.25 Score=51.41 Aligned_cols=183 Identities=11% Similarity=0.068 Sum_probs=106.8
Q ss_pred HHHHHHhhCCCCHHHHHHHHHHHHHhhCCchhHHHHHHcCCHHHHH----HHHccCCCHHHHHHHHHHHHHhhcCchhHH
Q 006114 409 LPKILQLLTSEDPDVQIHAVKVVANLAAEDINQEKIVEEGGLDALL----LLLRTSQNTTILRVASGAIANLAMNEMNQG 484 (660)
Q Consensus 409 I~~LV~LL~s~d~~vr~~Aa~aL~nLa~~~en~~~Ive~GgI~~Lv----~LL~~s~d~~v~~~Aa~AL~nLA~~~~n~~ 484 (660)
+..+..++..+. +.+.-++-++.-++.++.....+...+.-..++ ..+.....+..+-.++++++|+..++..+.
T Consensus 105 l~~l~kil~WP~-~~~fPvLDLlRl~~l~p~~~~~~~~~~~~~~l~~~l~~~~~~~~~p~n~ml~lR~l~NlF~~~~g~~ 183 (304)
T 3ebb_A 105 LQILWKAINCPE-DIVFPALDILRLSIKHPSVNENFCNEKEGAQFSSHLINLLNPKGKPANQLLALRTFCNCFVGQAGQK 183 (304)
T ss_dssp HHHHHHHHTSCT-TTCHHHHHHHHHHTTSHHHHHHHHSTTTHHHHHHHHHHTTCTTSCHHHHHHHHHHHHHGGGSHHHHH
T ss_pred HHHHHHHHcCCH-HhHHHHHHHHHHHHcCccHHHHhhccccchHHHHHHHHhcCCCCChHHHHHHHHHHHHccCCchhHH
Confidence 344445553332 334444555544444555554454433323333 333333456678889999999999999888
Q ss_pred HHHhc--CccHHHHHhhcCCCCHHHHHHHHHHHHHHhcC----hhHHHHHHhccHHHHHHHHhc-CCCHHHHHHHHHHHH
Q 006114 485 LIMSR--GGGQLLAKTASKTDDPQTLRMVAGALANLCGN----EKLHTMLEEDGAIKALLAMVR-SGNIDVIAQVARGLA 557 (660)
Q Consensus 485 ~Ive~--g~I~~Ll~LL~~s~d~~v~~~Aa~aLanLa~~----~~~r~~iv~~G~V~~Lv~lL~-s~~~~v~~~Al~aLa 557 (660)
.+... .+++.+...+. +++..++..++.++.|++.. ... .. ...++..+..++. ..++++...++.+||
T Consensus 184 ~l~~~~~~il~~~~~~~~-~~nknl~iA~ATl~~NlAv~~~~~~~~-~~--~~~ll~~l~~il~~~~d~EalyR~LvALG 259 (304)
T 3ebb_A 184 LMMSQRESLMSHAIELKS-GSNKNIHIALATLALNYSVCFHKDHNI-EG--KAQCLSLISTILEVVQDLEATFRLLVALG 259 (304)
T ss_dssp HHHHTHHHHHHHHHGGGS-SCCHHHHHHHHHHHHHHHHHHHHSCCH-HH--HHHHHHHHHHHHTTCCCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHhc-CCChhHHHHHHHHHHHHHHHHhhcCCc-hH--HHHHHHHHHHHHhccCCHHHHHHHHHHHH
Confidence 87752 34455555543 46889999999999999831 111 00 1114444555554 468999999999999
Q ss_pred HhhccchhhhhhcchhhhHHHhhcChHHHHHHhhcC-CCHHHHHHHHH
Q 006114 558 NFAKCESRAIVQGQRKGRSHLMEDSALEWLIANSKT-NSASTRRHVEL 604 (660)
Q Consensus 558 nLA~~~~~~~aq~~~e~r~~Li~~G~v~~Lv~lL~s-~d~~vr~~Aa~ 604 (660)
+|..+++. .+.....-|+..++-++... ..+.|...|..
T Consensus 260 tL~~~~~~--------~~~lak~l~~~~~v~~~~~~~~~~kv~~~~~~ 299 (304)
T 3ebb_A 260 TLISDDSN--------AVQLAKSLGVDSQIKKYSSVSEPAKVSECCRF 299 (304)
T ss_dssp HHHTTCHH--------HHHHHHHTTHHHHGGGGGGCCSSHHHHHHHHH
T ss_pred HHHhCChh--------HHHHHHHcCHHHHHHHHHhCCCchhHHHHHHH
Confidence 99976532 22233334555555555544 34555554433
No 94
>2iw3_A Elongation factor 3A; acetylation, ATP-binding, protein biosynthesis, nucleotide-binding, phosphorylation, RNA- binding, rRNA-binding; HET: ADP; 2.4A {Saccharomyces cerevisiae} PDB: 2iwh_A* 2ix3_A 2ix8_A
Probab=95.68 E-value=0.2 Score=60.05 Aligned_cols=209 Identities=13% Similarity=0.035 Sum_probs=133.3
Q ss_pred CHHHHHHhhCCCCHHHHHHHHHHHHHhhCC----chhHHHHHHcCCHHHHHHHHccCCCHHHHHHHHHHHHHhhcC-chh
Q 006114 408 GLPKILQLLTSEDPDVQIHAVKVVANLAAE----DINQEKIVEEGGLDALLLLLRTSQNTTILRVASGAIANLAMN-EMN 482 (660)
Q Consensus 408 gI~~LV~LL~s~d~~vr~~Aa~aL~nLa~~----~en~~~Ive~GgI~~Lv~LL~~s~d~~v~~~Aa~AL~nLA~~-~~n 482 (660)
.+..|...+...... ..|+.++..|+.. +..-..++ +.+|.++..+. +.+..|+..|..++..|+.. +.+
T Consensus 55 ~~~~~~~~~~~k~~~--~~a~~~~~~~~~~~~~~~~~e~~~~--~~~~~~~~~~~-dk~~~v~~aa~~~~~~~~~~~~~~ 129 (986)
T 2iw3_A 55 FFGELAKGIKDKKTA--ANAMQAVAHIANQSNLSPSVEPYIV--QLVPAICTNAG-NKDKEIQSVASETLISIVNAVNPV 129 (986)
T ss_dssp HHHHHHHHHTSHHHH--HHHHHHHHHHTCTTTCCTTTHHHHH--TTHHHHHHHTT-CSSHHHHHHHHHHHHHHHHHSCGG
T ss_pred HHHHHHHHHhccCCH--HHHHHHHHHHHHhcCCCCCcccchH--HHHHHHHHHhc-CCchHHHHHHHHHHHHHHHhCCHH
Confidence 445555555543333 7888899999852 22223333 46888888886 77888999888888887644 332
Q ss_pred HHHHHhcCccHHHHHhhcCCCCHHHHHHHHHHHHHHhcChhHHHHHHhccHHHHHHHHhcCCCHHHHHHHHHHHHHhhcc
Q 006114 483 QGLIMSRGGGQLLAKTASKTDDPQTLRMVAGALANLCGNEKLHTMLEEDGAIKALLAMVRSGNIDVIAQVARGLANFAKC 562 (660)
Q Consensus 483 ~~~Ive~g~I~~Ll~LL~~s~d~~v~~~Aa~aLanLa~~~~~r~~iv~~G~V~~Lv~lL~s~~~~v~~~Al~aLanLA~~ 562 (660)
.. ..++|.|+..+..+..=+....|+.+|..|+..........=...||.+...+....++|...|..++..+|.+
T Consensus 130 a~----~~~~~~~~~~~~~~~kw~~k~~~l~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~d~k~~v~~~~~~~~~~~~~~ 205 (986)
T 2iw3_A 130 AI----KALLPHLTNAIVETNKWQEKIAILAAFSAMVDAAKDQVALRMPELIPVLSETMWDTKKEVKAAATAAMTKATET 205 (986)
T ss_dssp GH----HHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHSHHHHHHHHHHHHHHHHHHTTCSSHHHHHHHHHHHHHHGGG
T ss_pred HH----HHHHHHHHHHhccccchHHHHHHHHHHHHHHHHhHHHHHHhccchhcchHhhcccCcHHHHHHHHHHHHHHHhc
Confidence 22 33678888888655556788888899999984333333333347899999999999999999999999999965
Q ss_pred chhhhhhcchhhhHHHhhcChHHHHHHhhcCCCHHHHHHHHHHHHHhhcCC----ccHHHHHhcCcHHHHHHHHhcCChH
Q 006114 563 ESRAIVQGQRKGRSHLMEDSALEWLIANSKTNSASTRRHVELALCHLAQNE----DNARDFISRGGAKELVQISIESSRE 638 (660)
Q Consensus 563 ~~~~~aq~~~e~r~~Li~~G~v~~Lv~lL~s~d~~vr~~Aa~AL~nLa~~~----e~~~~Ive~G~l~~Lv~lL~s~s~~ 638 (660)
-++ .--...+|.|+..+.+++. | -.++..|+... .....+. =.+|.|.+-+...+..
T Consensus 206 ~~n------------~d~~~~~~~~~~~~~~p~~-~----~~~~~~l~~~tfv~~v~~~~l~--~~~p~l~r~l~~~~~~ 266 (986)
T 2iw3_A 206 VDN------------KDIERFIPSLIQCIADPTE-V----PETVHLLGATTFVAEVTPATLS--IMVPLLSRGLNERETG 266 (986)
T ss_dssp CCC------------TTTGGGHHHHHHHHHCTTH-H----HHHHHHHTTCCCCSCCCHHHHH--HHHHHHHHHHTSSSHH
T ss_pred CCC------------cchhhhHHHHHHHhcChhh-h----HHHHHHhhcCeeEeeecchhHH--HHHHHHHhhhccCcch
Confidence 221 0014568888888877643 2 23344444322 1222221 1457777777655544
Q ss_pred HHHHHH
Q 006114 639 DIRNLA 644 (660)
Q Consensus 639 ~ir~~A 644 (660)
.-|..|
T Consensus 267 ~~r~~~ 272 (986)
T 2iw3_A 267 IKRKSA 272 (986)
T ss_dssp HHHHHH
T ss_pred hheeeE
Confidence 444433
No 95
>2v71_A Nuclear distribution protein NUDE-like 1; developmental protein, nuclear protein, neurogenesis, cytosk LIS1 binding, differentiation; 2.24A {Rattus norvegicus}
Probab=95.67 E-value=0.49 Score=45.72 Aligned_cols=71 Identities=24% Similarity=0.177 Sum_probs=33.2
Q ss_pred hhhhHHHHHHhhHHHH---HHHHHHHHhhhhhhhhhhhhhhHHhHHHHHHHhhhhhccccchhHHHHHHHHHHHHHHHHH
Q 006114 222 MENSTYQKALADTTQL---YEKKIAELNKKLEDEHACFEGAVEQLDMVKKLLSDYQNSNQGQKEVHELCVKLKETRQLHE 298 (660)
Q Consensus 222 ~~~~~~~~~l~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~Lk~~Le~e~~~~e 298 (660)
..|.++++.|-++-|. ||.+..-..--++|-..+++.| .+=...|+.+...++
T Consensus 102 ~~~~~l~~~ireLEq~NDdlEr~~R~~~~SleD~e~kln~a------------------------iEr~alLE~El~EKe 157 (189)
T 2v71_A 102 AIKEQLHKYVRELEQANDDLERAKRATIMSLEDFEQRLNQA------------------------IERNAFLESELDEKE 157 (189)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH------------------------HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHhhHHHHHHHHHHhhHHHHHHHHHHH------------------------HHHHHHHHHHHHHHH
Confidence 4444444444433332 5555555555566666666555 333445555556688
Q ss_pred hHHHHHHHHHHHHHHHHH
Q 006114 299 SAVYEVQTLKSEYKNLLE 316 (660)
Q Consensus 299 ~~e~E~~~lks~l~~l~~ 316 (660)
.+..++++|+-++.+|..
T Consensus 158 ~l~~~~QRLkdE~rDLk~ 175 (189)
T 2v71_A 158 SLLVSVQRLKDEARDLRQ 175 (189)
T ss_dssp HHHCCC------------
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 888888888888888776
No 96
>1lrv_A LRV, leucine-rich repeat variant; leucine-rich repeats, repetitive structure, iron sulfur proteins, nitrogen fixation; 2.60A {Azotobacter vinelandii} SCOP: a.118.1.5
Probab=95.62 E-value=0.013 Score=59.33 Aligned_cols=69 Identities=19% Similarity=0.073 Sum_probs=35.5
Q ss_pred HHHHHHHhcCCCHHHHHHHHHHHHHhhccchh-hhhhcchhhhHHHhhcChHHHHHHhhcCCCHHHHHHHHHHH
Q 006114 534 IKALLAMVRSGNIDVIAQVARGLANFAKCESR-AIVQGQRKGRSHLMEDSALEWLIANSKTNSASTRRHVELAL 606 (660)
Q Consensus 534 V~~Lv~lL~s~~~~v~~~Al~aLanLA~~~~~-~~aq~~~e~r~~Li~~G~v~~Lv~lL~s~d~~vr~~Aa~AL 606 (660)
.+.+..++..+++.|+..++..+ +..--. .........|..+...-+.+.|..+ .+.+..||..|+..|
T Consensus 172 ~~ll~~ll~D~d~~VR~aaa~~l---~~~~L~~Ll~D~d~~VR~~aa~~l~~~~L~~L-~D~~~~VR~aa~~~L 241 (244)
T 1lrv_A 172 EESLGLMTQDPEPEVRRIVASRL---RGDDLLELLHDPDWTVRLAAVEHASLEALREL-DEPDPEVRLAIAGRL 241 (244)
T ss_dssp GGGGGGSTTCSSHHHHHHHHHHC---CGGGGGGGGGCSSHHHHHHHHHHSCHHHHHHC-CCCCHHHHHHHHCCC
T ss_pred HHHHHHHHcCCCHHHHHHHHHhC---CHHHHHHHHcCCCHHHHHHHHHcCCHHHHHHc-cCCCHHHHHHHHHHh
Confidence 34555667788888888877653 110000 0000112234444443335555555 666777777766544
No 97
>2ocy_A RAB guanine nucleotide exchange factor SEC2; RAB, GEF, guanine exchange factor, coiled-coil, endocytosis/exocytosis complex; 3.30A {Saccharomyces cerevisiae} SCOP: h.1.33.1
Probab=95.44 E-value=0.67 Score=43.33 Aligned_cols=92 Identities=20% Similarity=0.243 Sum_probs=75.3
Q ss_pred hhHHHHHHHHHHHHHHHHHHhhhhchHHHHHHHHHHHhhhhhhHHHHhhhhhHHHHHHhh---HHHHHHHHHHHHhhhhh
Q 006114 174 TTQMYEKKITELIKQLEIEHARSEGAEEQVDTMKKLISDNQKSIEQYEMENSTYQKALAD---TTQLYEKKIAELNKKLE 250 (660)
Q Consensus 174 ~~~~~~~~~~~l~~~l~~e~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~l~~---~~~~~~~~~~~~~~~~~ 250 (660)
.......++..|...|..|+.++..++.+...+.+-|.++--|.= ..+.++.|+ -+..+|++...|.+++.
T Consensus 52 ~~~~~~~e~~~L~~~l~~E~~~R~~aE~~~~~ie~ElEeLTasLF------eEAN~MVa~ar~~~~~~e~r~~~L~~ql~ 125 (154)
T 2ocy_A 52 ELSDRDDEVKRLREDIAKENELRTKAEEEADKLNKEVEDLTASLF------DEANNMVADARKEKYAIEILNKRLTEQLR 125 (154)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHTHHHHHHHHHHHHHHHHH------HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH------HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345678899999999999999999999999999988888875542 223333333 35679999999999999
Q ss_pred hhhhhhhhhHHhHHHHHHHhh
Q 006114 251 DEHACFEGAVEQLDMVKKLLS 271 (660)
Q Consensus 251 ~~~~~~~~~~~~~~~~~~~~~ 271 (660)
|-.+++....+||..+|.++-
T Consensus 126 e~~~~l~~lq~ql~~LK~v~~ 146 (154)
T 2ocy_A 126 EKDTLLDTLTLQLKNLKKVMH 146 (154)
T ss_dssp HHHHHHHHHHHHHHHHHHTTS
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 999999999999999998764
No 98
>1upk_A MO25 protein; transferase, armadillo; HET: MSE; 1.85A {Homo sapiens} SCOP: a.118.1.15 PDB: 1upl_A 2wtk_A* 3gni_A*
Probab=95.41 E-value=0.83 Score=48.04 Aligned_cols=200 Identities=14% Similarity=0.096 Sum_probs=143.4
Q ss_pred HHHHHcCCHHHHHHHHccCCCHHHHHHHHHHHHHhhcC-ch----hHHHHHhcCccHHHHHhhcCCCCHHHHHHHHHHHH
Q 006114 442 EKIVEEGGLDALLLLLRTSQNTTILRVASGAIANLAMN-EM----NQGLIMSRGGGQLLAKTASKTDDPQTLRMVAGALA 516 (660)
Q Consensus 442 ~~Ive~GgI~~Lv~LL~~s~d~~v~~~Aa~AL~nLA~~-~~----n~~~Ive~g~I~~Ll~LL~~s~d~~v~~~Aa~aLa 516 (660)
..|...+.+..|+..|. .-+-+.+..++.+..++... .. ....+.. --..|..++....+|++.-.+-..|+
T Consensus 72 ~ei~~~dll~~Li~~l~-~L~fE~RKd~~~if~~llr~~~~~~~p~v~Yl~~--~peil~~L~~gYe~~diAl~~G~mLR 148 (341)
T 1upk_A 72 QELYNSGLLSTLVADLQ-LIDFEGKKDVAQIFNNILRRQIGTRTPTVEYICT--QQNILFMLLKGYESPEIALNCGIMLR 148 (341)
T ss_dssp HHHHHHSHHHHHHHTGG-GSCHHHHHHHHHHHHHHHTCCBTTBCHHHHHHHT--CTHHHHHHHHGGGSTTTHHHHHHHHH
T ss_pred HHHHHhCHHHHHHHhcc-cCCchhhccHHHHHHHHHhcccCCCCchhHHHHc--CHHHHHHHHHhhccchhHhHHHHHHH
Confidence 45566778888888886 66888899999998888765 22 2333333 12233333434456677777777888
Q ss_pred HHhcChhHHHHHHhccHHHHHHHHhcCCCHHHHHHHHHHHHHhhccchhhhhhcchhhhHHHhh---cChHHHHHHhhcC
Q 006114 517 NLCGNEKLHTMLEEDGAIKALLAMVRSGNIDVIAQVARGLANFAKCESRAIVQGQRKGRSHLME---DSALEWLIANSKT 593 (660)
Q Consensus 517 nLa~~~~~r~~iv~~G~V~~Lv~lL~s~~~~v~~~Al~aLanLA~~~~~~~aq~~~e~r~~Li~---~G~v~~Lv~lL~s 593 (660)
.++.++..+..+...+.+..+..++..++-++..-|..++..+-..+....+ .++. +........++.+
T Consensus 149 ecir~e~la~~iL~~~~f~~fF~yv~~~~FdiasDAf~TfkelLt~Hk~lva--------efL~~nyd~Ff~~y~~Ll~S 220 (341)
T 1upk_A 149 ECIRHEPLAKIILWSEQFYDFFRYVEMSTFDIASDAFATFKDLLTRHKLLSA--------EFLEQHYDRFFSEYEKLLHS 220 (341)
T ss_dssp HHHTSHHHHHHHHHSGGGGHHHHHTTCSSHHHHHHHHHHHHHHHHSSHHHHH--------HHHHHTHHHHHHHHHHHTTC
T ss_pred HHHHhHHHHHHHhccHHHHHHHHHhcCCCchHHHHHHHHHHHHHhccHHHHH--------HHHHHhHHHHHHHHHHHhcC
Confidence 8889999999999999999999999999999999999999877655432222 2333 3466778888999
Q ss_pred CCHHHHHHHHHHHHHhhcCCccHHHHHh----cCcHHHHHHHHhcCChHHHHHHHH---HHHhcCcc
Q 006114 594 NSASTRRHVELALCHLAQNEDNARDFIS----RGGAKELVQISIESSREDIRNLAK---KTMKSNPR 653 (660)
Q Consensus 594 ~d~~vr~~Aa~AL~nLa~~~e~~~~Ive----~G~l~~Lv~lL~s~s~~~ir~~A~---~~L~~~p~ 653 (660)
++--+++.+...|+.|-.+..|...|.. ..-+..++.++++.+ ..++--|- ++.-.||.
T Consensus 221 ~NYVTkRQSlKLLgelLldr~N~~vM~~Yis~~~nLkl~M~LL~d~s-k~Iq~EAFhVFKvFVANP~ 286 (341)
T 1upk_A 221 ENYVTKRQSLKLLGELLLDRHNFTIMTKYISKPENLKLMMNLLRDKS-RNIQFEAFHVFKVFVANPN 286 (341)
T ss_dssp SSHHHHHHHHHHHHHHHHSGGGHHHHHHHTTCHHHHHHHHHHTTCSC-HHHHHHHHHHHHHHHHCSS
T ss_pred CcchhHHHHHHHHHHHHhCchHHHHHHHHhCCHHHHHHHHHHhcCch-hchhhhhhhheeeeeeCCC
Confidence 9999999999999999888766555543 455677778887655 44444444 44555654
No 99
>1upk_A MO25 protein; transferase, armadillo; HET: MSE; 1.85A {Homo sapiens} SCOP: a.118.1.15 PDB: 1upl_A 2wtk_A* 3gni_A*
Probab=95.18 E-value=1.3 Score=46.61 Aligned_cols=206 Identities=11% Similarity=0.022 Sum_probs=152.1
Q ss_pred HHHHhCCCHHHHHHhhCCCCHHHHHHHHHHHHHhhCC-chh----HHHHHHcCCHHHHHHHHccCCCHHHHHHHHHHHHH
Q 006114 401 AKICDEVGLPKILQLLTSEDPDVQIHAVKVVANLAAE-DIN----QEKIVEEGGLDALLLLLRTSQNTTILRVASGAIAN 475 (660)
Q Consensus 401 ~~I~e~ggI~~LV~LL~s~d~~vr~~Aa~aL~nLa~~-~en----~~~Ive~GgI~~Lv~LL~~s~d~~v~~~Aa~AL~n 475 (660)
..+...+.+..|+..|..=+-+.|..++.+..++... ..+ ...+.. --..|..++....++++.-.+...|+-
T Consensus 72 ~ei~~~dll~~Li~~l~~L~fE~RKd~~~if~~llr~~~~~~~p~v~Yl~~--~peil~~L~~gYe~~diAl~~G~mLRe 149 (341)
T 1upk_A 72 QELYNSGLLSTLVADLQLIDFEGKKDVAQIFNNILRRQIGTRTPTVEYICT--QQNILFMLLKGYESPEIALNCGIMLRE 149 (341)
T ss_dssp HHHHHHSHHHHHHHTGGGSCHHHHHHHHHHHHHHHTCCBTTBCHHHHHHHT--CTHHHHHHHHGGGSTTTHHHHHHHHHH
T ss_pred HHHHHhCHHHHHHHhcccCCchhhccHHHHHHHHHhcccCCCCchhHHHHc--CHHHHHHHHHhhccchhHhHHHHHHHH
Confidence 3566678899999999988999999999999888773 222 223332 233333444444567777788888999
Q ss_pred hhcCchhHHHHHhcCccHHHHHhhcCCCCHHHHHHHHHHHHHHh-cChhHHHHHHhc---cHHHHHHHHhcCCCHHHHHH
Q 006114 476 LAMNEMNQGLIMSRGGGQLLAKTASKTDDPQTLRMVAGALANLC-GNEKLHTMLEED---GAIKALLAMVRSGNIDVIAQ 551 (660)
Q Consensus 476 LA~~~~n~~~Ive~g~I~~Ll~LL~~s~d~~v~~~Aa~aLanLa-~~~~~r~~iv~~---G~V~~Lv~lL~s~~~~v~~~ 551 (660)
++.++.....|...+.+-.+...+. .++-++...|..++..|- .++.....+... ..+...-.++.+++=-++.+
T Consensus 150 cir~e~la~~iL~~~~f~~fF~yv~-~~~FdiasDAf~TfkelLt~Hk~lvaefL~~nyd~Ff~~y~~Ll~S~NYVTkRQ 228 (341)
T 1upk_A 150 CIRHEPLAKIILWSEQFYDFFRYVE-MSTFDIASDAFATFKDLLTRHKLLSAEFLEQHYDRFFSEYEKLLHSENYVTKRQ 228 (341)
T ss_dssp HHTSHHHHHHHHHSGGGGHHHHHTT-CSSHHHHHHHHHHHHHHHHSSHHHHHHHHHHTHHHHHHHHHHHTTCSSHHHHHH
T ss_pred HHHhHHHHHHHhccHHHHHHHHHhc-CCCchHHHHHHHHHHHHHhccHHHHHHHHHHhHHHHHHHHHHHhcCCcchhHHH
Confidence 9999999999999888877777775 478899998888888764 555555555543 35666778899999999999
Q ss_pred HHHHHHHhhccchhhhhhcchhhhHHHhhcChHHHHHHhhcCCCHHHHHHHHHHHHHhhcCCc
Q 006114 552 VARGLANFAKCESRAIVQGQRKGRSHLMEDSALEWLIANSKTNSASTRRHVELALCHLAQNED 614 (660)
Q Consensus 552 Al~aLanLA~~~~~~~aq~~~e~r~~Li~~G~v~~Lv~lL~s~d~~vr~~Aa~AL~nLa~~~e 614 (660)
++..|+.|-.+.+.. ......+-+..-+..++.+|.+.+..++-.|.-++-.+..++.
T Consensus 229 SlKLLgelLldr~N~-----~vM~~Yis~~~nLkl~M~LL~d~sk~Iq~EAFhVFKvFVANP~ 286 (341)
T 1upk_A 229 SLKLLGELLLDRHNF-----TIMTKYISKPENLKLMMNLLRDKSRNIQFEAFHVFKVFVANPN 286 (341)
T ss_dssp HHHHHHHHHHSGGGH-----HHHHHHTTCHHHHHHHHHHTTCSCHHHHHHHHHHHHHHHHCSS
T ss_pred HHHHHHHHHhCchHH-----HHHHHHhCCHHHHHHHHHHhcCchhchhhhhhhheeeeeeCCC
Confidence 999999997653321 1233445556678899999999999999988888777776663
No 100
>2of3_A ZYG-9; multifunctional macromolecule, kinetochore, microtubule, XMAP215, STU2, DIS1, microtubule associated protein, structural protein; 1.90A {Caenorhabditis elegans}
Probab=95.09 E-value=0.74 Score=46.99 Aligned_cols=178 Identities=12% Similarity=0.031 Sum_probs=114.7
Q ss_pred CHHHHHHhhCCCCHHHHHHHHHHHHHhhC-CchhHHHHHHcCCHHHHHH----HHccCCCHHHHHHHHHHHHHhhcC--c
Q 006114 408 GLPKILQLLTSEDPDVQIHAVKVVANLAA-EDINQEKIVEEGGLDALLL----LLRTSQNTTILRVASGAIANLAMN--E 480 (660)
Q Consensus 408 gI~~LV~LL~s~d~~vr~~Aa~aL~nLa~-~~en~~~Ive~GgI~~Lv~----LL~~s~d~~v~~~Aa~AL~nLA~~--~ 480 (660)
.-+.+...|-+.|..-+..|+..|..... +++ .+.. .++.++. .+. ++++.+...++.+|..+... .
T Consensus 47 ~~~~~~~~lfs~d~k~~~~ale~L~~~l~~~~~---~~~~--~lDll~kw~~lr~~-d~N~~v~~~~L~~L~~l~~~l~~ 120 (266)
T 2of3_A 47 AKVSLMSQLFHKDFKQHLAALDSLVRLADTSPR---SLLS--NSDLLLKWCTLRFF-ETNPAALIKVLELCKVIVELIRD 120 (266)
T ss_dssp BCHHHHHHHTCSCHHHHHHHHHHHHHHHHHCHH---HHHH--THHHHHHHHHHHTT-SCCHHHHHHHHHHHHHHHHHHHH
T ss_pred ccHHHHHHhcCCCHHHHHHHHHHHHHHhhhChH---HHHH--HHHHHHHHHHHHHh-CCCHHHHHHHHHHHHHHHHHHHh
Confidence 33455666667788888888888776443 332 2221 1333332 233 56888888888887776432 1
Q ss_pred hh-HHHHHh-cCccHHHHHhhcCCCCHHHHHHHHHHHHHHhcChhHHHHHHhccHHHHHHHHhcCCCHHHHHHHHHHHHH
Q 006114 481 MN-QGLIMS-RGGGQLLAKTASKTDDPQTLRMVAGALANLCGNEKLHTMLEEDGAIKALLAMVRSGNIDVIAQVARGLAN 558 (660)
Q Consensus 481 ~n-~~~Ive-~g~I~~Ll~LL~~s~d~~v~~~Aa~aLanLa~~~~~r~~iv~~G~V~~Lv~lL~s~~~~v~~~Al~aLan 558 (660)
.. +-.-.+ .-.+|.|+.-+.+ +...++..+-.+|..++. ..--..+++.++..+.+.|..++..++..|+.
T Consensus 121 ~~y~~~~~ea~~~lP~LveKlGd-~k~~vR~~~r~il~~l~~------v~~~~~v~~~l~~g~ksKN~R~R~e~l~~l~~ 193 (266)
T 2of3_A 121 TETPMSQEEVSAFVPYLLLKTGE-AKDNMRTSVRDIVNVLSD------VVGPLKMTPMLLDALKSKNARQRSECLLVIEY 193 (266)
T ss_dssp TTCCCCHHHHHHHHHHHHHGGGC-SSHHHHHHHHHHHHHHHH------HHCHHHHHHHHHHGGGCSCHHHHHHHHHHHHH
T ss_pred ccccchHHHHHHHHHHHHHHhCC-ChHHHHHHHHHHHHHHHH------HCCHHHHHHHHHHHHccCCHHHHHHHHHHHHH
Confidence 10 000111 2257888888865 455777777777766652 11112467788888899999999999999988
Q ss_pred hhccchhhhhhcchhhhHHHhhcChH---HHHHHhhcCCCHHHHHHHHHHHHHhhc
Q 006114 559 FAKCESRAIVQGQRKGRSHLMEDSAL---EWLIANSKTNSASTRRHVELALCHLAQ 611 (660)
Q Consensus 559 LA~~~~~~~aq~~~e~r~~Li~~G~v---~~Lv~lL~s~d~~vr~~Aa~AL~nLa~ 611 (660)
+-... |.. ...++ |.+..++.+.|..||..|..++..+..
T Consensus 194 li~~~------G~~-------~~~~l~~~~~ia~ll~D~d~~VR~aAl~~lve~y~ 236 (266)
T 2of3_A 194 YITNA------GIS-------PLKSLSVEKTVAPFVGDKDVNVRNAAINVLVACFK 236 (266)
T ss_dssp HHHHH------CSG-------GGGGGCHHHHHGGGGGCSSHHHHHHHHHHHHHHHH
T ss_pred HHHhc------CCC-------ccccccchHHHHHHHcCCCHHHHHHHHHHHHHHHH
Confidence 76321 111 23467 999999999999999999999987654
No 101
>3o0z_A RHO-associated protein kinase 1; coiled-coil, transferase; HET: MSE; 2.33A {Homo sapiens}
Probab=95.06 E-value=1.7 Score=41.06 Aligned_cols=34 Identities=18% Similarity=0.292 Sum_probs=15.2
Q ss_pred HHHhhhhhhhHHHHhhhhHHHHHHHHHhhhhhhh
Q 006114 104 SMRNLVTRSEFLEKENAHLELEVEKILGELNHQK 137 (660)
Q Consensus 104 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 137 (660)
.++.|..++--|...+..|+.++-.|-..|.+.+
T Consensus 49 ~~rELq~~~~~L~~~k~~Leke~~~LQa~L~qEr 82 (168)
T 3o0z_A 49 LNRELQERNRILENSKSQTDKDYYQLQAILEAER 82 (168)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3334444444444444444444444444444433
No 102
>3ol1_A Vimentin; structural genomics, PSI-2, protein structure initiative, no structural genomics consortium, NESG, structural protein; 2.81A {Homo sapiens} PDB: 3uf1_A
Probab=95.03 E-value=0.19 Score=45.10 Aligned_cols=41 Identities=20% Similarity=0.271 Sum_probs=34.3
Q ss_pred hhHHHHHHHHHHHHHHHHHHhhhhchHHHHHHHHHHHhhhh
Q 006114 174 TTQMYEKKITELIKQLEIEHARSEGAEEQVDTMKKLISDNQ 214 (660)
Q Consensus 174 ~~~~~~~~~~~l~~~l~~e~~~~~~~~~~~~~l~~~l~~~~ 214 (660)
--..|+.+|.+|++++..-...+..+.-+++.++-.+.|++
T Consensus 14 ~~~~ye~~I~~LR~qid~~~~e~a~l~leldn~~~~~edfk 54 (119)
T 3ol1_A 14 LGDLYEEEMRELRRQVDQLTNDKARVEVERDNLAEDIMRLR 54 (119)
T ss_dssp CTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34679999999999999888888888888888887777777
No 103
>2efr_A General control protein GCN4 and tropomyosin 1 Al; destabilizing cluster, hydrophobic core, contractIle protein; 1.80A {Saccharomyces cerevisiae} PDB: 2efs_A 2d3e_A
Probab=94.97 E-value=2.4 Score=39.67 Aligned_cols=70 Identities=13% Similarity=0.174 Sum_probs=55.6
Q ss_pred HHHHHHHHHhhhhhhhhhhhhhhHHHHHHhhHHHHHHHHHHHHHHHHHHhhhhchHHHHHHHHHHHhhhh
Q 006114 145 EKIVQLEISLKNSKQQQLDNSSYQKVLADTTQMYEKKITELIKQLEIEHARSEGAEEQVDTMKKLISDNQ 214 (660)
Q Consensus 145 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~e~~~~~~~~~~~~~l~~~l~~~~ 214 (660)
++-..+|-.++..+.+--+-.+|..|...+.+.+++.|.+|--.|..++..+..+.++++..=.-|...+
T Consensus 70 qrEd~yEeqIk~L~~kLKEAE~RAE~AERsv~kLEk~id~lEd~L~~~Kek~~~i~~eLd~tl~el~~~~ 139 (155)
T 2efr_A 70 QKEDKYEEEIKVLSDKLKEAETRAEFAERSVTKLEKSIDDLEDELYAQKLKYKAISEEMKQLEDKVEELL 139 (155)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc
Confidence 4445556666666666667789999999999999999999999999999999999999886555554443
No 104
>2dfs_A Myosin-5A; myosin-V, inhibited state, cryoelectron tomograp contractIle protein-transport protein complex; 24.00A {Gallus gallus}
Probab=94.90 E-value=0.28 Score=59.53 Aligned_cols=60 Identities=15% Similarity=0.268 Sum_probs=34.8
Q ss_pred HhhHHHHHHHHHHHHHHHHHHhhhhchHHHHHHHHHHHhhhhhhHHHHhhhhhHHHHHHhhHH
Q 006114 173 DTTQMYEKKITELIKQLEIEHARSEGAEEQVDTMKKLISDNQKSIEQYEMENSTYQKALADTT 235 (660)
Q Consensus 173 ~~~~~~~~~~~~l~~~l~~e~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~l~~~~ 235 (660)
..+..++++++++.++++.....++.+++....++. +++..+...+.+|..++.++.|..
T Consensus 984 ~~v~~L~~e~~~l~~~~~~~~ke~~~lee~~~~~~~---~L~~kv~~L~~e~~~L~qq~~~l~ 1043 (1080)
T 2dfs_A 984 NRVLSLQEEIAKLRKELHQTQTEKKTIEEWADKYKH---ETEQLVSELKEQNTLLKTEKEELN 1043 (1080)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345556666666666666666666666666655553 444445555566666666665443
No 105
>2dfs_A Myosin-5A; myosin-V, inhibited state, cryoelectron tomograp contractIle protein-transport protein complex; 24.00A {Gallus gallus}
Probab=94.82 E-value=0.23 Score=60.31 Aligned_cols=46 Identities=20% Similarity=0.226 Sum_probs=19.9
Q ss_pred hHHHHHHHHHHHhhhhhhHHHHhhhhhHHHHHHhhHHHHHHHHHHH
Q 006114 199 AEEQVDTMKKLISDNQKSIEQYEMENSTYQKALADTTQLYEKKIAE 244 (660)
Q Consensus 199 ~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~ 244 (660)
++.++..|+..+.++.+.++...++....++...++.+..+.|++.
T Consensus 982 ~~~~v~~L~~e~~~l~~~~~~~~ke~~~lee~~~~~~~~L~~kv~~ 1027 (1080)
T 2dfs_A 982 ATNRVLSLQEEIAKLRKELHQTQTEKKTIEEWADKYKHETEQLVSE 1027 (1080)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344444444444444444444444444444444444433333333
No 106
>2fv2_A RCD1 required for cell differentiation1 homolog; armadillo-repeat, transcription; 2.20A {Homo sapiens}
Probab=94.77 E-value=0.77 Score=46.51 Aligned_cols=153 Identities=14% Similarity=0.034 Sum_probs=108.4
Q ss_pred HHHHHHHHHhhcCchhHHHHHhcCccHHHHHhhcCC----CCHHHHHHHHHHHHHHh--cChhHHHHHHhccHHHHHHHH
Q 006114 467 RVASGAIANLAMNEMNQGLIMSRGGGQLLAKTASKT----DDPQTLRMVAGALANLC--GNEKLHTMLEEDGAIKALLAM 540 (660)
Q Consensus 467 ~~Aa~AL~nLA~~~~n~~~Ive~g~I~~Ll~LL~~s----~d~~v~~~Aa~aLanLa--~~~~~r~~iv~~G~V~~Lv~l 540 (660)
.+|...|-.+|.||+.+..++...+.-.|..+|... +..-++-.+.|+|+.|. .+++.-..+...+.||..+..
T Consensus 74 cnaLaLlQcvAshpetr~~Fl~a~iplyLyPfL~t~sk~r~fE~LRLtsLGVIgaLvK~dd~eVi~fLL~tEiiplCLri 153 (268)
T 2fv2_A 74 CNALALLQCVASHPETRSAFLAAHIPLFLYPFLHTVSKTRPFEYLRLTSLGVIGALVKTDEQEVINFLLTTEIIPLCLRI 153 (268)
T ss_dssp HHHHHHHHHHHHCTTTHHHHHHTTGGGGTHHHHHCCCCSHHHHHHHHHHHHHHHHHGGGCCHHHHHHHHHTTHHHHHHHH
T ss_pred HHHHHHHHHHHcCcchhhHHHHccchHHhhhhhccccCCCcchhhhhhHHHHHHHHhccCcHHHHHHHHhhhHHHHHHHH
Confidence 456666677899999999999998877777777532 12356777889999998 678888888999999999999
Q ss_pred hcCCCHHHHHHHHHHHHHhhccchhhhhhc-chhhhHHHhhcChHHHHH-HhhcCCCHHHHHHHHHHHHHhhcCCccHHH
Q 006114 541 VRSGNIDVIAQVARGLANFAKCESRAIVQG-QRKGRSHLMEDSALEWLI-ANSKTNSASTRRHVELALCHLAQNEDNARD 618 (660)
Q Consensus 541 L~s~~~~v~~~Al~aLanLA~~~~~~~aq~-~~e~r~~Li~~G~v~~Lv-~lL~s~d~~vr~~Aa~AL~nLa~~~e~~~~ 618 (660)
|..++.-.+..|..++..|-.++. .+.-. ....|- ..-..++..++ .+...+++.+.+|+..+-..|+.++..+..
T Consensus 154 me~GselSKtvAtfIlqKIL~dd~-GL~YiC~t~eRF-~av~~vL~~mV~~l~~~ps~RLLKhiircYlRLsdn~rar~a 231 (268)
T 2fv2_A 154 MESGSELSKTVATFILQKILLDDT-GLAYICQTYERF-SHVAMILGKMVLQLSKEPSARLLKHVVRCYLRLSDNPRAREA 231 (268)
T ss_dssp HHHSCHHHHHHHHHHHHHHHHSHH-HHHHHTSSHHHH-HHHHHHHHHHHHHTTTSCCHHHHHHHHHHHHHHTTSHHHHHH
T ss_pred HhhccHHHHHHHHHHHHHHhccch-hHHHHHccHHHH-HHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHhcCHHHHHH
Confidence 999999999999999887765431 10000 000011 11122333333 345667899999999999999998876665
Q ss_pred HHh
Q 006114 619 FIS 621 (660)
Q Consensus 619 Ive 621 (660)
+..
T Consensus 232 L~~ 234 (268)
T 2fv2_A 232 LRQ 234 (268)
T ss_dssp HHH
T ss_pred HHH
Confidence 553
No 107
>3ebb_A Phospholipase A2-activating protein; armadillo repeat, structural genomics consortium, SGC, WD repeat, acetylation, ATP-binding; 1.90A {Homo sapiens}
Probab=94.76 E-value=0.98 Score=46.92 Aligned_cols=190 Identities=11% Similarity=0.111 Sum_probs=114.2
Q ss_pred HHHHHHHHccCCCHHHHHHHHHHHHHhhcCchhHHHHHhcC----ccHHHHHhhcCCCCHHHHHHHHHHHHHHhcChhHH
Q 006114 450 LDALLLLLRTSQNTTILRVASGAIANLAMNEMNQGLIMSRG----GGQLLAKTASKTDDPQTLRMVAGALANLCGNEKLH 525 (660)
Q Consensus 450 I~~Lv~LL~~s~d~~v~~~Aa~AL~nLA~~~~n~~~Ive~g----~I~~Ll~LL~~s~d~~v~~~Aa~aLanLa~~~~~r 525 (660)
+..|..++. =+ .+.+--+.-+++-++.+|.....+...+ .+..++..+.....|..+-.++.+++|+..++.++
T Consensus 105 l~~l~kil~-WP-~~~~fPvLDLlRl~~l~p~~~~~~~~~~~~~~l~~~l~~~~~~~~~p~n~ml~lR~l~NlF~~~~g~ 182 (304)
T 3ebb_A 105 LQILWKAIN-CP-EDIVFPALDILRLSIKHPSVNENFCNEKEGAQFSSHLINLLNPKGKPANQLLALRTFCNCFVGQAGQ 182 (304)
T ss_dssp HHHHHHHHT-SC-TTTCHHHHHHHHHHTTSHHHHHHHHSTTTHHHHHHHHHHTTCTTSCHHHHHHHHHHHHHGGGSHHHH
T ss_pred HHHHHHHHc-CC-HHhHHHHHHHHHHHHcCccHHHHhhccccchHHHHHHHHhcCCCCChHHHHHHHHHHHHccCCchhH
Confidence 445555542 22 2223334445555555555444444321 22234444444456777888889999999999999
Q ss_pred HHHHhc--cHHHHHHHHhcCCCHHHHHHHHHHHHHhhccchhhhhhcchhhhHHHhhcChHHHHHHhhcC-CCHHHHHHH
Q 006114 526 TMLEED--GAIKALLAMVRSGNIDVIAQVARGLANFAKCESRAIVQGQRKGRSHLMEDSALEWLIANSKT-NSASTRRHV 602 (660)
Q Consensus 526 ~~iv~~--G~V~~Lv~lL~s~~~~v~~~Al~aLanLA~~~~~~~aq~~~e~r~~Li~~G~v~~Lv~lL~s-~d~~vr~~A 602 (660)
..+... .+++.+...+.+.++.++..++..+.|++....... ..+.+ ..++..+..++.. .|+...-.+
T Consensus 183 ~~l~~~~~~il~~~~~~~~~~nknl~iA~ATl~~NlAv~~~~~~---~~~~~-----~~ll~~l~~il~~~~d~EalyR~ 254 (304)
T 3ebb_A 183 KLMMSQRESLMSHAIELKSGSNKNIHIALATLALNYSVCFHKDH---NIEGK-----AQCLSLISTILEVVQDLEATFRL 254 (304)
T ss_dssp HHHHHTHHHHHHHHHGGGSSCCHHHHHHHHHHHHHHHHHHHHSC---CHHHH-----HHHHHHHHHHHTTCCCHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHhcCCChhHHHHHHHHHHHHHHHHhhcC---CchHH-----HHHHHHHHHHHhccCCHHHHHHH
Confidence 888753 345555555567799999999999999985421100 00000 1133444444443 477888888
Q ss_pred HHHHHHhhcCCccHHHHHh-cCcHHHHHHHHhcCChHHHHHHHHHHHh
Q 006114 603 ELALCHLAQNEDNARDFIS-RGGAKELVQISIESSREDIRNLAKKTMK 649 (660)
Q Consensus 603 a~AL~nLa~~~e~~~~Ive-~G~l~~Lv~lL~s~s~~~ir~~A~~~L~ 649 (660)
..||++|...+.....+.+ .|+...+-.+..+..+..+.+.|+-+|.
T Consensus 255 LvALGtL~~~~~~~~~lak~l~~~~~v~~~~~~~~~~kv~~~~~~~~~ 302 (304)
T 3ebb_A 255 LVALGTLISDDSNAVQLAKSLGVDSQIKKYSSVSEPAKVSECCRFILN 302 (304)
T ss_dssp HHHHHHHHTTCHHHHHHHHHTTHHHHGGGGGGCCSSHHHHHHHHHHHT
T ss_pred HHHHHHHHhCChhHHHHHHHcCHHHHHHHHHhCCCchhHHHHHHHHHH
Confidence 9999999876655555554 4665556666655456668888877764
No 108
>2f31_A Diaphanous protein homolog 1; formin,MDIA1, protein-protein complex, armadillo repeats, structural protein; 2.10A {Mus musculus}
Probab=94.45 E-value=0.67 Score=46.08 Aligned_cols=153 Identities=15% Similarity=0.133 Sum_probs=97.7
Q ss_pred HcCCHHHHHHHHccC----------CCHHHHHHHHHHHHHhhcCchhHHHHHh-cCccHHHHHhhcCCCCHHHHHHHHHH
Q 006114 446 EEGGLDALLLLLRTS----------QNTTILRVASGAIANLAMNEMNQGLIMS-RGGGQLLAKTASKTDDPQTLRMVAGA 514 (660)
Q Consensus 446 e~GgI~~Lv~LL~~s----------~d~~v~~~Aa~AL~nLA~~~~n~~~Ive-~g~I~~Ll~LL~~s~d~~v~~~Aa~a 514 (660)
..||+..|+.+|... .+......+..||..|..+..+...++. .+++..++..| +++++.++..|+..
T Consensus 41 ~~~Gl~~L~~~L~~~~~~~~~~~~~~~~~~~~~~l~CLkalmn~~~G~~~vl~~~~~i~~l~~~L-~s~~~~~r~~~leL 119 (233)
T 2f31_A 41 GAEGLASLLDILKRLHDEKEETSGNYDSRNQHEIIRCLKAFMNNKFGIKTMLETEEGILLLVRAM-DPAVPNMMIDAAKL 119 (233)
T ss_dssp HHHHHHHHHHHHHHHHTCC-----CCHHHHHHHHHHHHHHHTSSHHHHHHHHTSSSHHHHHHTTC-CTTSHHHHHHHHHH
T ss_pred HHhHHHHHHHHHHHHHhcccccchhhhHHHHHHHHHHHHHHhCChHHHHHHHcCcHHHHHHHHHh-CCCCchHHHHHHHH
Confidence 468888888887531 1456677899999999888877777776 66788888888 47899999999999
Q ss_pred HHHHhcChh--H-HHHHHhc----------cHHHHHHHHhc-CCCHHHHHHHHHHHHHhhccchhhhhhcchhhhHHHhh
Q 006114 515 LANLCGNEK--L-HTMLEED----------GAIKALLAMVR-SGNIDVIAQVARGLANFAKCESRAIVQGQRKGRSHLME 580 (660)
Q Consensus 515 LanLa~~~~--~-r~~iv~~----------G~V~~Lv~lL~-s~~~~v~~~Al~aLanLA~~~~~~~aq~~~e~r~~Li~ 580 (660)
|+.+|..+. + ...+.++ .-+..+++.+. +.+.+....++..|-.+....++.-. .-..|..+..
T Consensus 120 L~~lc~~~~~~G~~~~VL~Al~~~~~~~e~~RF~~lv~~l~~~~~~e~~~~~m~lIN~li~~~~dl~~--R~~lR~ef~~ 197 (233)
T 2f31_A 120 LSALCILPQPEDMNERVLEAMTERAEMDEVERFQPLLDGLKSGTSIALKVGCLQLINALITPAEELDF--RVHIRSELMR 197 (233)
T ss_dssp HHHHHTCSSSSCHHHHHHHHHHHHHHHHTSCTTHHHHHTTSTTSCHHHHHHHHHHHHHHHTTCCCHHH--HHHHHHHHHH
T ss_pred HHHHHhCCCCCChHHHHHHHHHHHHHhCCcchHHHHHHHHhcCChHHHHHHHHHHHHHHHCCCCCHHH--HHHHHHHHHH
Confidence 998985543 5 5544432 23445666676 34555555544444444433222111 1245666667
Q ss_pred cChHHHHHHhhcCCCHHHHHH
Q 006114 581 DSALEWLIANSKTNSASTRRH 601 (660)
Q Consensus 581 ~G~v~~Lv~lL~s~d~~vr~~ 601 (660)
.|..+.+-.+-...++.+...
T Consensus 198 ~Gl~~il~~l~~~~~~~L~~Q 218 (233)
T 2f31_A 198 LGLHQVLQELREIENEDMKVQ 218 (233)
T ss_dssp TTHHHHHHHHHHCCCHHHHHH
T ss_pred CChHHHHHHHhccCCHHHHHH
Confidence 777766665545455655444
No 109
>2f31_A Diaphanous protein homolog 1; formin,MDIA1, protein-protein complex, armadillo repeats, structural protein; 2.10A {Mus musculus}
Probab=94.41 E-value=0.39 Score=47.85 Aligned_cols=153 Identities=14% Similarity=0.143 Sum_probs=101.4
Q ss_pred chhHHHHHhCCCHHHHHHhhCC----C-------CHHHHHHHHHHHHHhhCCchhHHHHHH-cCCHHHHHHHHccCCCHH
Q 006114 397 RATIAKICDEVGLPKILQLLTS----E-------DPDVQIHAVKVVANLAAEDINQEKIVE-EGGLDALLLLLRTSQNTT 464 (660)
Q Consensus 397 ~~~~~~I~e~ggI~~LV~LL~s----~-------d~~vr~~Aa~aL~nLa~~~en~~~Ive-~GgI~~Lv~LL~~s~d~~ 464 (660)
.+.+..+ ..+|+..|+..|.. + +...+..++.+|..|..+......+.. .+++..|+..|. ++++.
T Consensus 34 ~~Wv~~F-~~~Gl~~L~~~L~~~~~~~~~~~~~~~~~~~~~~l~CLkalmn~~~G~~~vl~~~~~i~~l~~~L~-s~~~~ 111 (233)
T 2f31_A 34 VSWVQTF-GAEGLASLLDILKRLHDEKEETSGNYDSRNQHEIIRCLKAFMNNKFGIKTMLETEEGILLLVRAMD-PAVPN 111 (233)
T ss_dssp HHHHHHH-HHHHHHHHHHHHHHHHTCC-----CCHHHHHHHHHHHHHHHTSSHHHHHHHHTSSSHHHHHHTTCC-TTSHH
T ss_pred cHHHHHH-HHhHHHHHHHHHHHHHhcccccchhhhHHHHHHHHHHHHHHhCChHHHHHHHcCcHHHHHHHHHhC-CCCch
Confidence 4455566 67898888877751 1 356677889999999888888777775 456888888886 88999
Q ss_pred HHHHHHHHHHHhhcCch--h-HHHHHh----------cCccHHHHHhhcCCCCHHHHHHHHHHHHHHhcCh---h----H
Q 006114 465 ILRVASGAIANLAMNEM--N-QGLIMS----------RGGGQLLAKTASKTDDPQTLRMVAGALANLCGNE---K----L 524 (660)
Q Consensus 465 v~~~Aa~AL~nLA~~~~--n-~~~Ive----------~g~I~~Ll~LL~~s~d~~v~~~Aa~aLanLa~~~---~----~ 524 (660)
++..|+..|+.+|..+. + ...+.+ ..-+.+++..+..+.+.+....+...|=.+..++ . .
T Consensus 112 ~r~~~leLL~~lc~~~~~~G~~~~VL~Al~~~~~~~e~~RF~~lv~~l~~~~~~e~~~~~m~lIN~li~~~~dl~~R~~l 191 (233)
T 2f31_A 112 MMIDAAKLLSALCILPQPEDMNERVLEAMTERAEMDEVERFQPLLDGLKSGTSIALKVGCLQLINALITPAEELDFRVHI 191 (233)
T ss_dssp HHHHHHHHHHHHHTCSSSSCHHHHHHHHHHHHHHHHTSCTTHHHHHTTSTTSCHHHHHHHHHHHHHHHTTCCCHHHHHHH
T ss_pred HHHHHHHHHHHHHhCCCCCChHHHHHHHHHHHHHhCCcchHHHHHHHHhcCChHHHHHHHHHHHHHHHCCCCCHHHHHHH
Confidence 99999999999987743 5 454433 2356678888765555555554444443444332 2 4
Q ss_pred HHHHHhccHHHHHHHHhcCCCHHHHHH
Q 006114 525 HTMLEEDGAIKALLAMVRSGNIDVIAQ 551 (660)
Q Consensus 525 r~~iv~~G~V~~Lv~lL~s~~~~v~~~ 551 (660)
|..+...|..+.+-.+=...++++..+
T Consensus 192 R~ef~~~Gl~~il~~l~~~~~~~L~~Q 218 (233)
T 2f31_A 192 RSELMRLGLHQVLQELREIENEDMKVQ 218 (233)
T ss_dssp HHHHHHTTHHHHHHHHHHCCCHHHHHH
T ss_pred HHHHHHCChHHHHHHHhccCCHHHHHH
Confidence 455556677666655544566655444
No 110
>2fv2_A RCD1 required for cell differentiation1 homolog; armadillo-repeat, transcription; 2.20A {Homo sapiens}
Probab=94.36 E-value=0.47 Score=48.10 Aligned_cols=171 Identities=11% Similarity=0.132 Sum_probs=114.8
Q ss_pred HHHHHHHHHhhCCchhHHHHHHcCCHHHHHHHHccCC----CHHHHHHHHHHHHHhhcC--chhHHHHHhcCccHHHHHh
Q 006114 425 IHAVKVVANLAAEDINQEKIVEEGGLDALLLLLRTSQ----NTTILRVASGAIANLAMN--EMNQGLIMSRGGGQLLAKT 498 (660)
Q Consensus 425 ~~Aa~aL~nLa~~~en~~~Ive~GgI~~Lv~LL~~s~----d~~v~~~Aa~AL~nLA~~--~~n~~~Ive~g~I~~Ll~L 498 (660)
.+|+..|.-+|.+|+.+..+..+...-.|...|.+.. ..-++-.+.|+++.|... ++.-..+...++||.+++.
T Consensus 74 cnaLaLlQcvAshpetr~~Fl~a~iplyLyPfL~t~sk~r~fE~LRLtsLGVIgaLvK~dd~eVi~fLL~tEiiplCLri 153 (268)
T 2fv2_A 74 CNALALLQCVASHPETRSAFLAAHIPLFLYPFLHTVSKTRPFEYLRLTSLGVIGALVKTDEQEVINFLLTTEIIPLCLRI 153 (268)
T ss_dssp HHHHHHHHHHHHCTTTHHHHHHTTGGGGTHHHHHCCCCSHHHHHHHHHHHHHHHHHGGGCCHHHHHHHHHTTHHHHHHHH
T ss_pred HHHHHHHHHHHcCcchhhHHHHccchHHhhhhhccccCCCcchhhhhhHHHHHHHHhccCcHHHHHHHHhhhHHHHHHHH
Confidence 3455555667889999999999977666677776432 246888899999999865 5556667788999999999
Q ss_pred hcCCCCHHHHHHHHHHHHHHhcChhHHHHHHhc--------cHHHHHH-HHhcCCCHHHHHHHHHHHHHhhccchhhhhh
Q 006114 499 ASKTDDPQTLRMVAGALANLCGNEKLHTMLEED--------GAIKALL-AMVRSGNIDVIAQVARGLANFAKCESRAIVQ 569 (660)
Q Consensus 499 L~~s~d~~v~~~Aa~aLanLa~~~~~r~~iv~~--------G~V~~Lv-~lL~s~~~~v~~~Al~aLanLA~~~~~~~aq 569 (660)
+.. ++.-.+..|+..+..+-.++.+-..++.. .++..++ .+...+++.+..+++++-..|+.+ ++
T Consensus 154 me~-GselSKtvAtfIlqKIL~dd~GL~YiC~t~eRF~av~~vL~~mV~~l~~~ps~RLLKhiircYlRLsdn-~r---- 227 (268)
T 2fv2_A 154 MES-GSELSKTVATFILQKILLDDTGLAYICQTYERFSHVAMILGKMVLQLSKEPSARLLKHVVRCYLRLSDN-PR---- 227 (268)
T ss_dssp HHH-SCHHHHHHHHHHHHHHHHSHHHHHHHTSSHHHHHHHHHHHHHHHHHTTTSCCHHHHHHHHHHHHHHTTS-HH----
T ss_pred Hhh-ccHHHHHHHHHHHHHHhccchhHHHHHccHHHHHHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHhcC-HH----
Confidence 975 66666666777777776666666655542 1222222 334578899999999999999854 32
Q ss_pred cchhhhHHHhh-------cChHHHHHHhhcCCCHHHHHHHHHHHHHh
Q 006114 570 GQRKGRSHLME-------DSALEWLIANSKTNSASTRRHVELALCHL 609 (660)
Q Consensus 570 ~~~e~r~~Li~-------~G~v~~Lv~lL~s~d~~vr~~Aa~AL~nL 609 (660)
+|.++.. +|.+..++ .+|+.+++.-...+.|+
T Consensus 228 ----ar~aL~~~LP~~Lrd~tf~~~l----~~D~~~k~~l~qLl~n~ 266 (268)
T 2fv2_A 228 ----AREALRQCLPDQLKDTTFAQVL----KDDTTTKRWLAQLVKNL 266 (268)
T ss_dssp ----HHHHHHHHSCGGGTSSTTHHHH----TSCHHHHHHHHHHHHHS
T ss_pred ----HHHHHHHhCcHHhhChHHHHHH----hcCHHHHHHHHHHHHhc
Confidence 2333321 23333222 35777777766666665
No 111
>4ffb_C Protein STU2; tubulin fold, heat repeats, cytoskeleton, microtubule, tubul domain, hydrolase; HET: GTP; 2.88A {Saccharomyces cerevisiae}
Probab=94.34 E-value=0.63 Score=46.87 Aligned_cols=146 Identities=14% Similarity=0.068 Sum_probs=92.0
Q ss_pred HHHHHhhCCCCHHHHHHHHHHHHHhhCC--ch--hHHH--HHHcCCHHHHHHH-HccCCCHHHHHHHHHHHHHhhcCchh
Q 006114 410 PKILQLLTSEDPDVQIHAVKVVANLAAE--DI--NQEK--IVEEGGLDALLLL-LRTSQNTTILRVASGAIANLAMNEMN 482 (660)
Q Consensus 410 ~~LV~LL~s~d~~vr~~Aa~aL~nLa~~--~e--n~~~--Ive~GgI~~Lv~L-L~~s~d~~v~~~Aa~AL~nLA~~~~n 482 (660)
+.+-..+.+.+..++..|+.+|..++.. .. .... ..-...+|.|+.- |. +..+.++..|..++..++.....
T Consensus 58 ~~lkk~l~DsN~~v~~~al~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~lveK~l~-~~k~~~~~~a~~~l~~~~~~~~~ 136 (278)
T 4ffb_C 58 TLFAQYITDSNVVAQEQAIVALNSLIDAFASSSLKNAHNITLISTWTPLLVEKGLT-SSRATTKTQSMSCILSLCGLDTS 136 (278)
T ss_dssp HHHHHHTTCSSHHHHHHHHHHHHHHHTTCC---CCHHHHHHHHHHHHHHHHHHTSS-CCCHHHHHHHHHHHHHHHHTSSS
T ss_pred HHHHHHhccchHHHHHHHHHHHHHHHHHhhhhhcccchhHHHHHHHHHHHHHHHhc-CccHHHHHHHHHHHHHHHHhcCc
Confidence 3344677788999999999999887752 11 1111 2223357777764 54 67788888888888776543221
Q ss_pred HHHHHhcCccHHHHHhhcCCCCHHHHHHHHHHHHHHhcC--hhH-HHHHHhccHHHHHHHHhcCCCHHHHHHHHHHHHHh
Q 006114 483 QGLIMSRGGGQLLAKTASKTDDPQTLRMVAGALANLCGN--EKL-HTMLEEDGAIKALLAMVRSGNIDVIAQVARGLANF 559 (660)
Q Consensus 483 ~~~Ive~g~I~~Ll~LL~~s~d~~v~~~Aa~aLanLa~~--~~~-r~~iv~~G~V~~Lv~lL~s~~~~v~~~Al~aLanL 559 (660)
... +++.++..+. +.+|.++..++.+|..+... ... -....-..+++.+..++.+.++.|+..|..+++.+
T Consensus 137 ~~~-----~~e~l~~~l~-~Knpkv~~~~l~~l~~~l~~fg~~~~~~k~~l~~i~~~l~k~l~d~~~~VR~aA~~l~~~l 210 (278)
T 4ffb_C 137 ITQ-----SVELVIPFFE-KKLPKLIAAAANCVYELMAAFGLTNVNVQTFLPELLKHVPQLAGHGDRNVRSQTMNLIVEI 210 (278)
T ss_dssp SHH-----HHHHHGGGGG-CSCHHHHHHHHHHHHHHHHHHTTTTCCHHHHHHHHGGGHHHHHTCSSHHHHHHHHHHHHHH
T ss_pred HHH-----HHHHHHHHHh-ccCHHHHHHHHHHHHHHHHHhCCCcCCchhHHHHHHHHHHHHHhCCcHHHHHHHHHHHHHH
Confidence 111 2344555564 47999999888888776421 110 00101113455677788999999999999999887
Q ss_pred hcc
Q 006114 560 AKC 562 (660)
Q Consensus 560 A~~ 562 (660)
-..
T Consensus 211 y~~ 213 (278)
T 4ffb_C 211 YKV 213 (278)
T ss_dssp HTC
T ss_pred HHH
Confidence 643
No 112
>3na7_A HP0958; flagellar biogenesis, flagellum export, C4 Zn-ribbon, coiled post-transcriptional, gene regulation, chaperone; HET: EPE; 2.20A {Helicobacter pylori}
Probab=94.26 E-value=1.1 Score=45.36 Aligned_cols=13 Identities=15% Similarity=0.396 Sum_probs=5.1
Q ss_pred HHHHHHHHHhhhh
Q 006114 237 LYEKKIAELNKKL 249 (660)
Q Consensus 237 ~~~~~~~~~~~~~ 249 (660)
.+...++++.+++
T Consensus 147 ~~~~~~~e~~~e~ 159 (256)
T 3na7_A 147 LVENEVKNIKETQ 159 (256)
T ss_dssp HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHH
Confidence 3334444444333
No 113
>3eg5_B Protein diaphanous homolog 1; protein-protein complex, RHO proteins, formins, armadillo repeat, G-protein, GTPase, alternative splicing; HET: GNP; 2.70A {Mus musculus} SCOP: a.118.1.23 PDB: 1z2c_B*
Probab=94.24 E-value=1 Score=48.31 Aligned_cols=154 Identities=16% Similarity=0.160 Sum_probs=99.8
Q ss_pred HHHHHcCCHHHHHHHHcc----------CCCHHHHHHHHHHHHHhhcCchhHHHHHh-cCccHHHHHhhcCCCCHHHHHH
Q 006114 442 EKIVEEGGLDALLLLLRT----------SQNTTILRVASGAIANLAMNEMNQGLIMS-RGGGQLLAKTASKTDDPQTLRM 510 (660)
Q Consensus 442 ~~Ive~GgI~~Lv~LL~~----------s~d~~v~~~Aa~AL~nLA~~~~n~~~Ive-~g~I~~Ll~LL~~s~d~~v~~~ 510 (660)
..++ .+|+..|+.+|.. ..+..+...+..||..|..+..+...++. .++|..|+..+. +.++.++..
T Consensus 104 ~~F~-~~Gl~~Ll~iL~~~~~~~~~~~~~~d~~~q~~~l~CLkalmN~~~G~~~vl~~~~~i~~l~~~L~-s~~~~~~~~ 181 (383)
T 3eg5_B 104 QTFG-AEGLASLLDILKRLHDEKEETSGNYDSRNQHEIIRCLKAFMNNKFGIKTMLETEEGILLLVRAMD-PAVPNMMID 181 (383)
T ss_dssp HHHH-HHHHHHHHHHHHHHHTCC-------CHHHHHHHHHHHHHHTSSHHHHHHHHTCSSHHHHHHHTCC-TTSHHHHHH
T ss_pred HHHH-HccHHHHHHHHHHHhhccccccchhhHHHHHHHHHHHHHHhcchhhHHHHHcChHHHHHHHHHhC-CCchHHHHH
Confidence 3344 6788888888842 22456777899999999888777777776 667888888884 688999999
Q ss_pred HHHHHHHHhcChh---HHHHHHhc----------cHHHHHHHHhcC-CCHHHHHHHHHHHHHhhccchhhhhhcchhhhH
Q 006114 511 VAGALANLCGNEK---LHTMLEED----------GAIKALLAMVRS-GNIDVIAQVARGLANFAKCESRAIVQGQRKGRS 576 (660)
Q Consensus 511 Aa~aLanLa~~~~---~r~~iv~~----------G~V~~Lv~lL~s-~~~~v~~~Al~aLanLA~~~~~~~aq~~~e~r~ 576 (660)
|+..|+.+|..+. ++..+.++ +-+..++..+.+ .+.+....++..|-.+..+.++.-. .-..|.
T Consensus 182 aleLL~~lc~~~~~~gG~~~VL~Al~~~~~~~e~~RF~~lv~~L~~~~~~e~~~~~m~lIN~li~~~~dl~~--R~~lR~ 259 (383)
T 3eg5_B 182 AAKLLSALCILPQPEDMNERVLEAMTERAEMDEVERFQPLLDGLKSGTSIALKVGCLQLINALITPAEELDF--RVHIRS 259 (383)
T ss_dssp HHHHHHHHHTCCSSTTHHHHHHHHHHHHHHHHTSCTTHHHHHTTSTTSCHHHHHHHHHHHHHHHTTCCCHHH--HHHHHH
T ss_pred HHHHHHHHHhCcCcCCcHHHHHHHHHHHHHhCCCCcHHHHHHHHHccCcHHHHHHHHHHHHHHHcCCCCHHH--HHHHHH
Confidence 9999999995543 35554432 335667777875 4666665555555444443322111 124566
Q ss_pred HHhhcChHHHHHHhhcCCCHHHH
Q 006114 577 HLMEDSALEWLIANSKTNSASTR 599 (660)
Q Consensus 577 ~Li~~G~v~~Lv~lL~s~d~~vr 599 (660)
.+...|..+.+-.+=...++.+.
T Consensus 260 ef~~~Gl~~il~~lr~~~~~~L~ 282 (383)
T 3eg5_B 260 ELMRLGLHQVLQELREIENEDMK 282 (383)
T ss_dssp HHHHTTHHHHHHHHTTSCCHHHH
T ss_pred HHHHCChHHHHHHHhcCCChhHH
Confidence 66777777766664333455443
No 114
>3na7_A HP0958; flagellar biogenesis, flagellum export, C4 Zn-ribbon, coiled post-transcriptional, gene regulation, chaperone; HET: EPE; 2.20A {Helicobacter pylori}
Probab=94.04 E-value=3.1 Score=41.90 Aligned_cols=45 Identities=11% Similarity=0.272 Sum_probs=20.8
Q ss_pred HHHHhhHHHHHHHHHHHHHHHHHHhhhhchHHHHHHHHHHHhhhh
Q 006114 170 VLADTTQMYEKKITELIKQLEIEHARSEGAEEQVDTMKKLISDNQ 214 (660)
Q Consensus 170 ~~~~~~~~~~~~~~~l~~~l~~e~~~~~~~~~~~~~l~~~l~~~~ 214 (660)
++...+..+|++|.++...++.-......+..++..++..+...+
T Consensus 101 ~~~~~i~~lE~eile~~e~ie~~~~~l~~~~~~l~~~~~~l~~~~ 145 (256)
T 3na7_A 101 IAKERSNQANREIENLQNEIKRKSEKQEDLKKEMLELEKLALELE 145 (256)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 444455555555555555554444444444444444444333333
No 115
>3eg5_B Protein diaphanous homolog 1; protein-protein complex, RHO proteins, formins, armadillo repeat, G-protein, GTPase, alternative splicing; HET: GNP; 2.70A {Mus musculus} SCOP: a.118.1.23 PDB: 1z2c_B*
Probab=93.96 E-value=1.2 Score=47.79 Aligned_cols=153 Identities=14% Similarity=0.126 Sum_probs=102.0
Q ss_pred chhHHHHHhCCCHHHHHHhhC-----------CCCHHHHHHHHHHHHHhhCCchhHHHHHH-cCCHHHHHHHHccCCCHH
Q 006114 397 RATIAKICDEVGLPKILQLLT-----------SEDPDVQIHAVKVVANLAAEDINQEKIVE-EGGLDALLLLLRTSQNTT 464 (660)
Q Consensus 397 ~~~~~~I~e~ggI~~LV~LL~-----------s~d~~vr~~Aa~aL~nLa~~~en~~~Ive-~GgI~~Lv~LL~~s~d~~ 464 (660)
.+.+..++ .+|+..|+.+|. ..+...+..++.+|..|.-+..+...+.. .++|..|+..|. ++++.
T Consensus 100 ~sWV~~F~-~~Gl~~Ll~iL~~~~~~~~~~~~~~d~~~q~~~l~CLkalmN~~~G~~~vl~~~~~i~~l~~~L~-s~~~~ 177 (383)
T 3eg5_B 100 VSWVQTFG-AEGLASLLDILKRLHDEKEETSGNYDSRNQHEIIRCLKAFMNNKFGIKTMLETEEGILLLVRAMD-PAVPN 177 (383)
T ss_dssp HHHHHHHH-HHHHHHHHHHHHHHHTCC-------CHHHHHHHHHHHHHHTSSHHHHHHHHTCSSHHHHHHHTCC-TTSHH
T ss_pred cHHHHHHH-HccHHHHHHHHHHHhhccccccchhhHHHHHHHHHHHHHHhcchhhHHHHHcChHHHHHHHHHhC-CCchH
Confidence 44556665 788998888774 12457788899999999888878777775 446888888886 78999
Q ss_pred HHHHHHHHHHHhhcCch--h-HHHHHh----------cCccHHHHHhhcCCCCHHHHHHHHHHHHHHhcC---hh----H
Q 006114 465 ILRVASGAIANLAMNEM--N-QGLIMS----------RGGGQLLAKTASKTDDPQTLRMVAGALANLCGN---EK----L 524 (660)
Q Consensus 465 v~~~Aa~AL~nLA~~~~--n-~~~Ive----------~g~I~~Ll~LL~~s~d~~v~~~Aa~aLanLa~~---~~----~ 524 (660)
++..|+.+|+.+|..+. + ...+.+ ..-+..++..|....+.+....+...|=.+... .. .
T Consensus 178 ~~~~aleLL~~lc~~~~~~gG~~~VL~Al~~~~~~~e~~RF~~lv~~L~~~~~~e~~~~~m~lIN~li~~~~dl~~R~~l 257 (383)
T 3eg5_B 178 MMIDAAKLLSALCILPQPEDMNERVLEAMTERAEMDEVERFQPLLDGLKSGTSIALKVGCLQLINALITPAEELDFRVHI 257 (383)
T ss_dssp HHHHHHHHHHHHHTCCSSTTHHHHHHHHHHHHHHHHTSCTTHHHHHTTSTTSCHHHHHHHHHHHHHHHTTCCCHHHHHHH
T ss_pred HHHHHHHHHHHHHhCcCcCCcHHHHHHHHHHHHHhCCCCcHHHHHHHHHccCcHHHHHHHHHHHHHHHcCCCCHHHHHHH
Confidence 99999999999997743 3 444433 234777888887655656655444444334432 22 4
Q ss_pred HHHHHhccHHHHHHHHhcCCCHHHHHH
Q 006114 525 HTMLEEDGAIKALLAMVRSGNIDVIAQ 551 (660)
Q Consensus 525 r~~iv~~G~V~~Lv~lL~s~~~~v~~~ 551 (660)
|..+...|..+.+-.+=...++++..+
T Consensus 258 R~ef~~~Gl~~il~~lr~~~~~~L~~Q 284 (383)
T 3eg5_B 258 RSELMRLGLHQVLQELREIENEDMKVQ 284 (383)
T ss_dssp HHHHHHTTHHHHHHHHTTSCCHHHHHH
T ss_pred HHHHHHCChHHHHHHHhcCCChhHHHH
Confidence 455556777776666433456655443
No 116
>2efr_A General control protein GCN4 and tropomyosin 1 Al; destabilizing cluster, hydrophobic core, contractIle protein; 1.80A {Saccharomyces cerevisiae} PDB: 2efs_A 2d3e_A
Probab=93.95 E-value=4.1 Score=38.10 Aligned_cols=80 Identities=20% Similarity=0.272 Sum_probs=54.1
Q ss_pred HHHHHHHHHHHhhhhhhhhhhhhhhHHhHHHHHHHhhhhhccccchhHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHH
Q 006114 235 TQLYEKKIAELNKKLEDEHACFEGAVEQLDMVKKLLSDYQNSNQGQKEVHELCVKLKETRQLHESAVYEVQTLKSEYKNL 314 (660)
Q Consensus 235 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~Lk~~Le~e~~~~e~~e~E~~~lks~l~~l 314 (660)
-..|+.+|..|..+|.+=-.|.+-|+.....+.+- |..|...|..+...+....+++...-.+|..+
T Consensus 72 Ed~yEeqIk~L~~kLKEAE~RAE~AERsv~kLEk~-------------id~lEd~L~~~Kek~~~i~~eLd~tl~el~~~ 138 (155)
T 2efr_A 72 EDKYEEEIKVLSDKLKEAETRAEFAERSVTKLEKS-------------IDDLEDELYAQKLKYKAISEEMKQLEDKVEEL 138 (155)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 45799999999999999999999998887776554 44555566666666666666666555555544
Q ss_pred HHhhhhccHHHHH
Q 006114 315 LEEKETMSDELQA 327 (660)
Q Consensus 315 ~~~~~~~~eel~~ 327 (660)
+..-.-++.|+.+
T Consensus 139 ~~~~~~~~~~~~~ 151 (155)
T 2efr_A 139 LSKNYHLENEVAR 151 (155)
T ss_dssp HHHHHHHHHHHHH
T ss_pred ccchHHHHHHHHH
Confidence 4433333444443
No 117
>3oc3_A Helicase MOT1, MOT1; regulation of transcription, hydrolase-transc complex; HET: MES; 3.10A {Encephalitozoon cuniculi}
Probab=93.93 E-value=0.11 Score=58.09 Aligned_cols=187 Identities=12% Similarity=0.054 Sum_probs=117.4
Q ss_pred HHHHHHHHHHHHHhhCC-chhHHHHHHcCCHHHHHHHHccCCCHHHHHHHHHHHHHhhcCchhHHHHH-hcCccHHHHHh
Q 006114 421 PDVQIHAVKVVANLAAE-DINQEKIVEEGGLDALLLLLRTSQNTTILRVASGAIANLAMNEMNQGLIM-SRGGGQLLAKT 498 (660)
Q Consensus 421 ~~vr~~Aa~aL~nLa~~-~en~~~Ive~GgI~~Lv~LL~~s~d~~v~~~Aa~AL~nLA~~~~n~~~Iv-e~g~I~~Ll~L 498 (660)
..||..|+.+|+.+ .+ +.. ...+..|+..+. .+.=+++-.+.-.|..+ .+ .+. -.++++.++..
T Consensus 242 APVRETaAQtLGaL-~hLp~e------~~IL~qLV~~l~-~~~WEVRHGGLLGLKYL---~D---LL~~Ld~Vv~aVL~G 307 (800)
T 3oc3_A 242 APVRDAAAYLLSRI-YPLIGP------NDIIEQLVGFLD-SGDWQVQFSGLIALGYL---KE---FVEDKDGLCRKLVSL 307 (800)
T ss_dssp CHHHHHHHHHHHHH-TTTSCS------CCHHHHHTTGGG-CSCHHHHHHHHHHHHHT---GG---GCCCHHHHHHHHHHH
T ss_pred eehHHHHHHHHHHH-HhCChh------HHHHHHHHhhcC-CCCeeehhhhHHHHHHH---HH---HHHHHHHHHHHHHhh
Confidence 58999999999999 62 221 334555554444 55667777777777777 11 111 25567888888
Q ss_pred hcCCCCHHHHHHHHHHHHHHhcChhHHHHHHhccHHHHHHHHhcCCC--HHHHHHHHHHHHHhhccchhhhhhcchhhhH
Q 006114 499 ASKTDDPQTLRMVAGALANLCGNEKLHTMLEEDGAIKALLAMVRSGN--IDVIAQVARGLANFAKCESRAIVQGQRKGRS 576 (660)
Q Consensus 499 L~~s~d~~v~~~Aa~aLanLa~~~~~r~~iv~~G~V~~Lv~lL~s~~--~~v~~~Al~aLanLA~~~~~~~aq~~~e~r~ 576 (660)
|.+ .|.+|+..||.+|..++ .+..-. +++..+-+.|.+-+ .......+..|+.|+...+.
T Consensus 308 L~D-~DDDVRAVAAetLiPIA-~p~~l~-----~LL~iLWd~L~~LDDLSASTgSVMdLLAkL~s~p~~----------- 369 (800)
T 3oc3_A 308 LSS-PDEDIKLLSAELLCHFP-ITDSLD-----LVLEKCWKNIESEELISVSKTSNLSLLTKIYRENPE----------- 369 (800)
T ss_dssp TTC-SSHHHHHHHHHHHTTSC-CSSTHH-----HHHHHHHHHHHTCCSCCTTHHHHHHHHHHHHHHCTT-----------
T ss_pred cCC-cccHHHHHHHHHhhhhc-chhhHH-----HHHHHHHHHhhhhcccchhhHHHHHHHHHHHcCCcc-----------
Confidence 876 67899999999999998 222111 23333444444321 12234455566666654321
Q ss_pred HHhhcChHHHHHHhhcCCCHHHHHHHHHHHHHhhcCCccHHHHHhcCcHHHHHHHHhcCChHHHHHHHHHHHh
Q 006114 577 HLMEDSALEWLIANSKTNSASTRRHVELALCHLAQNEDNARDFISRGGAKELVQISIESSREDIRNLAKKTMK 649 (660)
Q Consensus 577 ~Li~~G~v~~Lv~lL~s~d~~vr~~Aa~AL~nLa~~~e~~~~Ive~G~l~~Lv~lL~s~s~~~ir~~A~~~L~ 649 (660)
.-.....||.|.+++.+.-+.||..+..+|..+. ...++..+..-+--+..+++++.+.++..
T Consensus 370 a~~dp~LVPRL~PFLRHtITSVR~AVL~TL~tfL----------~~~~LRLIFQNILLE~neeIl~lS~~VWk 432 (800)
T 3oc3_A 370 LSIPPERLKDIFPCFTSPVPEVRTSILNMVKNLS----------EESIDFLVAEVVLIEEKDEIREMAIKLLK 432 (800)
T ss_dssp CCCCSGGGGGTGGGGTCSSHHHHHHHHHHTTTCC----------CHHHHHHHHHHHHHCSCHHHHHHHHHHHH
T ss_pred cccChHHHHHHHhhhcCCcHHHHHHHHHHHHHHH----------hhhHHHHHHHHHHhCCcHHHHHHHHHHHH
Confidence 1112478999999999999999999999998777 12233344333334566677777766553
No 118
>4hat_C Exportin-1; heat repeat, nuclear export, RAN-ranbp1, LMB, leptomycin B, protein transport-antibiotic complex; HET: GNP LMB; 1.78A {Saccharomyces cerevisiae} PDB: 4hau_C* 4hav_C* 4hb2_C* 4hax_C* 4haw_C* 4hay_C* 4hb3_C* 4haz_C* 4hb4_C* 3m1i_C* 4hb0_C* 4gmx_C* 4gpt_C* 3vyc_A 2l1l_B
Probab=93.87 E-value=0.46 Score=57.43 Aligned_cols=141 Identities=9% Similarity=-0.026 Sum_probs=86.4
Q ss_pred CCHHHHHHHHHHHHHhhcCchh-HHHHHhcCccHHHHHhhcCC----CCHHHHHHHHHHHHHHhcChhHHHHHHhccHHH
Q 006114 461 QNTTILRVASGAIANLAMNEMN-QGLIMSRGGGQLLAKTASKT----DDPQTLRMVAGALANLCGNEKLHTMLEEDGAIK 535 (660)
Q Consensus 461 ~d~~v~~~Aa~AL~nLA~~~~n-~~~Ive~g~I~~Ll~LL~~s----~d~~v~~~Aa~aLanLa~~~~~r~~iv~~G~V~ 535 (660)
.+-..++.+++|++.++.++.. ...-.-..+++.|+.++.+. +.+.++..++|+|+..+..-.....+. ..++.
T Consensus 465 ~~W~~~EA~~~a~gaIa~~~~~~~e~~~l~~vi~~Ll~l~~~~~~~d~k~~v~~t~~~~lGry~~wl~~~~~~L-~~vl~ 543 (1023)
T 4hat_C 465 WSWHNINTLSWAIGSISGTMSEDTEKRFVVTVIKDLLDLCVKKRGKDNKAVVASDIMYVVGQYPRFLKAHWNFL-RTVIL 543 (1023)
T ss_dssp CCHHHHHHHHHHHHHTTTSSCHHHHHHHHHHHHHHHHHHHHHCCSHHHHHHHHHHHHHHHHTCHHHHHHCHHHH-HHHHH
T ss_pred CCHHHHHHHHHHHHHHHcCCCchhHHHHHHHHHHHHHHhhhccccCcchHHHHHHHHHHHHHHHHHHhccHHHH-HHHHH
Confidence 5678899999999999987432 22223344678888887531 122344466688876653222112221 13555
Q ss_pred HHHHHhcCCCHHHHHHHHHHHHHhhccchhhhhhcchhhhHHHhh------cChHHHH----HHhhcCCCHHHHHHHHHH
Q 006114 536 ALLAMVRSGNIDVIAQVARGLANFAKCESRAIVQGQRKGRSHLME------DSALEWL----IANSKTNSASTRRHVELA 605 (660)
Q Consensus 536 ~Lv~lL~s~~~~v~~~Al~aLanLA~~~~~~~aq~~~e~r~~Li~------~G~v~~L----v~lL~s~d~~vr~~Aa~A 605 (660)
.|+..+..+++.+...||.++.+||.. .+..+.. ...++.+ ...+..-++.-+..+..+
T Consensus 544 ~L~~~l~~~~~~v~~~A~~al~~l~~~-----------c~~~l~~~~~~e~~p~~~~il~~l~~~~~~l~~~~~~~lyea 612 (1023)
T 4hat_C 544 KLFEFMHETHEGVQDMACDTFIKIVQK-----------CKYHFVIQQPRESEPFIQTIIRDIQKTTADLQPQQVHTFYKA 612 (1023)
T ss_dssp HHHHHTTCSCHHHHHHHHHHHHHHHHH-----------HTHHHHSCCTTCSSCHHHHHHHTHHHHHTTSCHHHHHHHHHH
T ss_pred HHHHHhhcCCHHHHHHHHHHHHHHHHH-----------HHHHhhccCCCCCchhHHHHHHHHHHHHHhCCHHHHHHHHHH
Confidence 566667778899999999999999953 2222321 1133333 333444566777788888
Q ss_pred HHHhhcCC
Q 006114 606 LCHLAQNE 613 (660)
Q Consensus 606 L~nLa~~~ 613 (660)
++.+....
T Consensus 613 i~~vi~~~ 620 (1023)
T 4hat_C 613 CGIIISEE 620 (1023)
T ss_dssp HHHHHTTC
T ss_pred HHHHHHhC
Confidence 88887644
No 119
>3l9t_A Putative uncharacterized protein SMU.31; hypothetical protein, unknown function; HET: EPE; 2.21A {Streptococcus mutans}
Probab=93.86 E-value=0.54 Score=47.13 Aligned_cols=143 Identities=16% Similarity=0.153 Sum_probs=98.9
Q ss_pred HHHHHHHHccCCCHHHHHHHHHHHHHhhcCchhHHHHHhcCccHHHHHhhcCCCCHHHHHHHHHHHHHHhc--ChhHHHH
Q 006114 450 LDALLLLLRTSQNTTILRVASGAIANLAMNEMNQGLIMSRGGGQLLAKTASKTDDPQTLRMVAGALANLCG--NEKLHTM 527 (660)
Q Consensus 450 I~~Lv~LL~~s~d~~v~~~Aa~AL~nLA~~~~n~~~Ive~g~I~~Ll~LL~~s~d~~v~~~Aa~aLanLa~--~~~~r~~ 527 (660)
+..|...|-.++..++|..|+.+|+.+ .. ....++.+...+...++=.|+..++.++..+|. +|+
T Consensus 72 ~~~la~~L~~~~~deVR~~Av~lLg~~-~~--------~~~~L~~ir~~va~D~~WrVre~lA~a~~~~~~~~~pe---- 138 (240)
T 3l9t_A 72 IKKLAFLAYQSDVYQVRMYAVFLFGYL-SK--------DKEILIFMRDEVSKDNNWRVQEVLAKAFDEFCKKIEYK---- 138 (240)
T ss_dssp HHHHHHHHHTCSSHHHHHHHHHHHHHT-TT--------SHHHHHHHHHTGGGCSCHHHHHHHHHHHHHHHHHHCTT----
T ss_pred HHHHHHHHHhCcchHHHHHHHHHHHhc-cC--------cHHHHHHHHHHhCCCCCccHHHHHHHHHHHHHHhcCHH----
Confidence 334444455577778999999988877 21 122456666544445677899999999998873 443
Q ss_pred HHhccHHHHHHHHhcCCCHHHHHHHHHHHHHhhccchhhhhhcchhhhHHHhh-cChHHHHHHhhcCCCHHHHHHHHHHH
Q 006114 528 LEEDGAIKALLAMVRSGNIDVIAQVARGLANFAKCESRAIVQGQRKGRSHLME-DSALEWLIANSKTNSASTRRHVELAL 606 (660)
Q Consensus 528 iv~~G~V~~Lv~lL~s~~~~v~~~Al~aLanLA~~~~~~~aq~~~e~r~~Li~-~G~v~~Lv~lL~s~d~~vr~~Aa~AL 606 (660)
..++.+...+.++++.|+..|+..+.-.|.. + ....+ .-++|.|-.+..+++..||+.++++|
T Consensus 139 ----~~l~~~~~W~~d~n~~VRR~Ase~~rpW~~~-~-----------~~k~dp~~ll~iL~~L~~D~s~yVrKSVan~L 202 (240)
T 3l9t_A 139 ----KALPIIDEWLKSSNLHTRRAATEGLRIWTNR-P-----------YFKENPNEAIRRIADLKEDVSEYVRKSVGNAL 202 (240)
T ss_dssp ----TTHHHHHHHHHCSSHHHHHHHHHHTCSGGGS-T-----------TTTTCHHHHHHHHHTTTTCSCHHHHHHHHHHH
T ss_pred ----HHHHHHHHHhcCCCHHHHHHHHHhhHHHhcc-c-----------hhhcCHHHHHHHHHHhcCChHHHHHHHHHHHH
Confidence 1567888899999999999999887654422 1 00111 23567777778888999999999999
Q ss_pred HHhhcCC-ccHHHHHh
Q 006114 607 CHLAQNE-DNARDFIS 621 (660)
Q Consensus 607 ~nLa~~~-e~~~~Ive 621 (660)
..++... +....++.
T Consensus 203 rD~SK~~Pd~V~~~~~ 218 (240)
T 3l9t_A 203 RDISKKFPDLVKIELK 218 (240)
T ss_dssp HHHHTTCHHHHHHHHH
T ss_pred HHHhhhCHHHHHHHHH
Confidence 9999854 55555554
No 120
>1wa5_C Importin alpha RE-exporter; nuclear transport/complex, nuclear transport, exportin, RAN GTPase, protein transport; HET: GTP; 2.0A {Saccharomyces cerevisiae} SCOP: a.118.1.1 PDB: 1z3h_A
Probab=93.86 E-value=1.3 Score=52.80 Aligned_cols=179 Identities=11% Similarity=0.106 Sum_probs=97.9
Q ss_pred HhhCCC---CHHHHHHHHHHHHHhhCCchhHHHHHHcCCHHHHHHHHccCCCHHHHHHHHHHHHHhhcCc--------h-
Q 006114 414 QLLTSE---DPDVQIHAVKVVANLAAEDINQEKIVEEGGLDALLLLLRTSQNTTILRVASGAIANLAMNE--------M- 481 (660)
Q Consensus 414 ~LL~s~---d~~vr~~Aa~aL~nLa~~~en~~~Ive~GgI~~Lv~LL~~s~d~~v~~~Aa~AL~nLA~~~--------~- 481 (660)
..|.++ ++.+|..|+++|+.++..- ....+ ...++.++..|. ++++.|+..||.||.+++... .
T Consensus 462 p~l~~~~~~~p~vr~~a~~~lg~~~~~~-~~~~l--~~~l~~l~~~L~-d~~~~V~~~A~~Al~~~~~~~~~~~~~~~~~ 537 (960)
T 1wa5_C 462 PDLTSNNIPHIILRVDAIKYIYTFRNQL-TKAQL--IELMPILATFLQ-TDEYVVYTYAAITIEKILTIRESNTSPAFIF 537 (960)
T ss_dssp HHHHCSSCSCHHHHHHHHHHHHHTGGGS-CHHHH--HHHHHHHHHHTT-CSCHHHHHHHHHHHHHHTTCBSCSSSCCBSS
T ss_pred HHhcCCCCCCceehHHHHHHHHHHHhhC-CHHHH--HHHHHHHHHHhC-CCChhHHHHHHHHHHHHHhcccccccccccc
Confidence 334555 8999999999999988731 11221 224788888887 678999999999999998742 1
Q ss_pred hHHHHHh--cCccHHHHHhhcCCC-CH-H--HHHHHHHHHHHHhc--ChhHHHHHHhccHHHHHHHHhc-----CCCHHH
Q 006114 482 NQGLIMS--RGGGQLLAKTASKTD-DP-Q--TLRMVAGALANLCG--NEKLHTMLEEDGAIKALLAMVR-----SGNIDV 548 (660)
Q Consensus 482 n~~~Ive--~g~I~~Ll~LL~~s~-d~-~--v~~~Aa~aLanLa~--~~~~r~~iv~~G~V~~Lv~lL~-----s~~~~v 548 (660)
.+..+.. ...+..|+.++.... .| . ....+..+|..++. .+.....+. ..++.|+..+. +.++.+
T Consensus 538 ~~~~l~p~l~~ll~~L~~ll~~~~~~~~~~~~~e~l~~al~~vv~~~~~~~~p~~~--~l~~~L~~~l~~~~~~~~~~~~ 615 (960)
T 1wa5_C 538 HKEDISNSTEILLKNLIALILKHGSSPEKLAENEFLMRSIFRVLQTSEDSIQPLFP--QLLAQFIEIVTIMAKNPSNPRF 615 (960)
T ss_dssp CGGGTTTTHHHHHHHHHHHHHTTCCCHHHHTSCHHHHHHHHHHHHHHTTTTGGGHH--HHHHHHHHHHHHHTTSCCCHHH
T ss_pred cHHHhhhhHHHHHHHHHHHHHhccCCCCcccccHHHHHHHHHHHHHHHHhhhhHHH--HHHHHHHHHHHHHHhCCCCcHH
Confidence 1222321 334556666665421 01 1 22334455544431 111111111 13344444432 346777
Q ss_pred HHHHHHHHHHhhcc-chhhhhhcchhhhHHHhhcChHHHHHHhhcCCCHHHHHHHHHHHH
Q 006114 549 IAQVARGLANFAKC-ESRAIVQGQRKGRSHLMEDSALEWLIANSKTNSASTRRHVELALC 607 (660)
Q Consensus 549 ~~~Al~aLanLA~~-~~~~~aq~~~e~r~~Li~~G~v~~Lv~lL~s~d~~vr~~Aa~AL~ 607 (660)
...++.+|+.++.. ++.. -.-.....+|.+...+..........+..++.
T Consensus 616 ~~~~~e~l~~l~~~~~~~~---------~~~~~~~~~p~~~~iL~~~~~~~~~~~~~i~~ 666 (960)
T 1wa5_C 616 THYTFESIGAILNYTQRQN---------LPLLVDSMMPTFLTVFSEDIQEFIPYVFQIIA 666 (960)
T ss_dssp HHHHHHHHHHHHHTSCGGG---------HHHHHHHHHHHHHHHHHTTCTTTHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcCCcch---------HHHHHHHHHHHHHHHHHhhhHhhHHHHHHHHH
Confidence 77788888888754 1111 11223445666666666543334433444433
No 121
>2e7s_A RAB guanine nucleotide exchange factor SEC2; coiled coil, endocytosis/exocytosis complex; 3.00A {Saccharomyces cerevisiae} SCOP: h.1.33.1
Probab=93.64 E-value=0.17 Score=46.24 Aligned_cols=89 Identities=20% Similarity=0.250 Sum_probs=60.1
Q ss_pred HHHHHHHHHHHHHHHHHHhhhhchHHHHHHHHHHHhhhhhhHHHHhhhhhHHHHHHhh---HHHHHHHHHHHHhhhhhhh
Q 006114 176 QMYEKKITELIKQLEIEHARSEGAEEQVDTMKKLISDNQKSIEQYEMENSTYQKALAD---TTQLYEKKIAELNKKLEDE 252 (660)
Q Consensus 176 ~~~~~~~~~l~~~l~~e~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~l~~---~~~~~~~~~~~~~~~~~~~ 252 (660)
.....++..|...|..|+.++..+|.+...+.+-|-++--|.= ..+.++.|+ -+..++++...|..++.|-
T Consensus 42 ~~~~~e~~~L~~~l~eE~~~R~~aE~~~~~ie~ElE~LTasLF------eEAN~MVa~ar~~~~~~e~r~~~L~~ql~e~ 115 (135)
T 2e7s_A 42 SDRDDEVKRLREDIAKENELRTKAEEEADKLNKEVEDLTASLF------DEANNLVADARMEKYAIEILNKRLTEQLREK 115 (135)
T ss_dssp TTHHHHHHTHHHHHHHTTSHHHHHHHTTHHHHHHHHHHHHHHH------HHHHHHHHHTTHHHHHHHHHHHHHHHTTTHH
T ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4567788889999999999999999999988888888875442 223333443 4567999999999999999
Q ss_pred hhhhhhhHHhHHHHHHHh
Q 006114 253 HACFEGAVEQLDMVKKLL 270 (660)
Q Consensus 253 ~~~~~~~~~~~~~~~~~~ 270 (660)
.+++....+||..+|.++
T Consensus 116 e~ll~~lq~QL~~LK~v~ 133 (135)
T 2e7s_A 116 DMLLDTLTLQLKNLKKVM 133 (135)
T ss_dssp HHCC--------------
T ss_pred HHHHHHHHHHHHHHHHHh
Confidence 999999999999988765
No 122
>3c2g_A SYS-1 protein; beta-catenin, phylogeny, SYS-1, developmental protein, DNA-binding, nucleus; 2.50A {Caenorhabditis elegans} PDB: 3c2h_A*
Probab=93.52 E-value=0.98 Score=47.70 Aligned_cols=110 Identities=14% Similarity=0.192 Sum_probs=86.8
Q ss_pred HHHhhCCchh-HHHHHHcCCHHHHHHHHccCCCHHHHHHHHHHHHHhhcCchhHHHHHhcCccHHHHHhhcCCCCHHHHH
Q 006114 431 VANLAAEDIN-QEKIVEEGGLDALLLLLRTSQNTTILRVASGAIANLAMNEMNQGLIMSRGGGQLLAKTASKTDDPQTLR 509 (660)
Q Consensus 431 L~nLa~~~en-~~~Ive~GgI~~Lv~LL~~s~d~~v~~~Aa~AL~nLA~~~~n~~~Ive~g~I~~Ll~LL~~s~d~~v~~ 509 (660)
|.+|..++.+ ..-++..+||..+..+++ .++.++.+..+..|...+.....+..-. ...+|.++..+...++.++..
T Consensus 266 LL~LLmHdSnAIDGFVk~DGv~~I~Tvin-YpN~~l~RaG~KLLLQVSDaksL~~t~L-~e~LPFi~~~i~~h~eDdvvY 343 (619)
T 3c2g_A 266 LLGLLLHDSDAIDGFVRSDGVGAITTVVQ-YPNNDLIRAGCKLLLQVSDAKALAKTPL-ENILPFLLRLIEIHPDDEVIY 343 (619)
T ss_dssp HHHHHCCSHHHHHHHHHTTHHHHHHHHTT-SSCHHHHHHHHHHHHHHTTCGGGGTSCC-TTHHHHHHHHHHHCCCHHHHH
T ss_pred HHHHHhcccccccceeecccceeEEEEee-cCCcHHHHhhhheeeeecchHHHhhccc-cccchHHHHHhccCCCcceEE
Confidence 4455565554 688999999999999997 8999999999999988765533221111 346788888887778889999
Q ss_pred HHHHHHHHHh-cChhHHHHHHhccHHHHHHHHhc
Q 006114 510 MVAGALANLC-GNEKLHTMLEEDGAIKALLAMVR 542 (660)
Q Consensus 510 ~Aa~aLanLa-~~~~~r~~iv~~G~V~~Lv~lL~ 542 (660)
...|.|.|.. +....+...+..|+++.|-..+.
T Consensus 344 SGTGFLSNVVAHKq~VKelAI~~nAI~LLh~~I~ 377 (619)
T 3c2g_A 344 SGTGFLSNVVAHKQHVKDIAIRSNAIFLLHTIIS 377 (619)
T ss_dssp HHHHHHHHHSTTCHHHHHHHHHTTHHHHHHHHHH
T ss_pred ecchHHHHHHhcccchHHHHhccCcHHHHHHHHh
Confidence 9999999996 66778888899999999988864
No 123
>1wa5_C Importin alpha RE-exporter; nuclear transport/complex, nuclear transport, exportin, RAN GTPase, protein transport; HET: GTP; 2.0A {Saccharomyces cerevisiae} SCOP: a.118.1.1 PDB: 1z3h_A
Probab=93.52 E-value=2.5 Score=50.21 Aligned_cols=134 Identities=9% Similarity=-0.036 Sum_probs=80.6
Q ss_pred HHHHHHHHHHHHhhCCchhHHHHHHcCCHHHHHHHHcc-----CCCHHHHHHHHHHHHHhhcCchhHHHHHhc-----Cc
Q 006114 422 DVQIHAVKVVANLAAEDINQEKIVEEGGLDALLLLLRT-----SQNTTILRVASGAIANLAMNEMNQGLIMSR-----GG 491 (660)
Q Consensus 422 ~vr~~Aa~aL~nLa~~~en~~~Ive~GgI~~Lv~LL~~-----s~d~~v~~~Aa~AL~nLA~~~~n~~~Ive~-----g~ 491 (660)
..|..|..+|..|+..-. ..++.. .++.+...|.. +++-..+..|..+++.++.+-......+.. ..
T Consensus 376 s~R~aa~~~L~~l~~~~~--~~v~~~-~l~~i~~~l~~~~~~~~~~w~~reaal~algaia~~~~~~~~~~~~~~~~~~l 452 (960)
T 1wa5_C 376 TRRRACTDFLKELKEKNE--VLVTNI-FLAHMKGFVDQYMSDPSKNWKFKDLYIYLFTALAINGNITNAGVSSTNNLLNV 452 (960)
T ss_dssp CHHHHHHHHHHHHHHHCH--HHHHHH-HHHHHHHHHHHHHC----CHHHHHHHHHHHHHHHBSSCCBTTBCCCBCTTCCH
T ss_pred CcHHHHHHHHHHHHHHcc--hhHHHH-HHHHHHHHHHHhccCcchhHHHHHHHHHHHHHHHHHhccccCCcccccccccH
Confidence 567788888877776322 112111 22333333431 345667888999999997531000000000 11
Q ss_pred cH----HHHHhhcCC--CCHHHHHHHHHHHHHHhcChhHHHHHHhccHHHHHHHHhcCCCHHHHHHHHHHHHHhhc
Q 006114 492 GQ----LLAKTASKT--DDPQTLRMVAGALANLCGNEKLHTMLEEDGAIKALLAMVRSGNIDVIAQVARGLANFAK 561 (660)
Q Consensus 492 I~----~Ll~LL~~s--~d~~v~~~Aa~aLanLa~~~~~r~~iv~~G~V~~Lv~lL~s~~~~v~~~Al~aLanLA~ 561 (660)
.+ .++..+.++ .+|-++..|+|+|+.++..- ... .-..+++.++..+.++++.|+..|+.+|.+|+.
T Consensus 453 ~~~l~~~v~p~l~~~~~~~p~vr~~a~~~lg~~~~~~--~~~-~l~~~l~~l~~~L~d~~~~V~~~A~~Al~~~~~ 525 (960)
T 1wa5_C 453 VDFFTKEIAPDLTSNNIPHIILRVDAIKYIYTFRNQL--TKA-QLIELMPILATFLQTDEYVVYTYAAITIEKILT 525 (960)
T ss_dssp HHHHHHHTHHHHHCSSCSCHHHHHHHHHHHHHTGGGS--CHH-HHHHHHHHHHHHTTCSCHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHhHHHhcCCCCCCceehHHHHHHHHHHHhhC--CHH-HHHHHHHHHHHHhCCCChhHHHHHHHHHHHHHh
Confidence 11 233334443 38999999999999998431 111 123567888888888899999999999999986
No 124
>2bnx_A Diaphanous protein homolog 1; autoinhibition, actin, nucleation, cytoskeleton, structural; 2.4A {Mus musculus} SCOP: a.118.1.23 PDB: 3o4x_A 3obv_A* 2bap_B
Probab=93.47 E-value=1.7 Score=46.60 Aligned_cols=153 Identities=14% Similarity=0.144 Sum_probs=101.2
Q ss_pred chhHHHHHhCCCHHHHHHhhC----CC-------CHHHHHHHHHHHHHhhCCchhHHHHHH-cCCHHHHHHHHccCCCHH
Q 006114 397 RATIAKICDEVGLPKILQLLT----SE-------DPDVQIHAVKVVANLAAEDINQEKIVE-EGGLDALLLLLRTSQNTT 464 (660)
Q Consensus 397 ~~~~~~I~e~ggI~~LV~LL~----s~-------d~~vr~~Aa~aL~nLa~~~en~~~Ive-~GgI~~Lv~LL~~s~d~~ 464 (660)
.+.+..| ..+|+..|+..|. .+ +...+..++.+|..|..+..+...+.. .+++..|+..|. ++++.
T Consensus 38 ~~Wv~~F-~~~Gl~~Ll~~L~~~~~~~~~~~~~~d~~~~~~~l~CLkalmN~~~Gl~~vl~~~~~i~~l~~sL~-s~~~~ 115 (386)
T 2bnx_A 38 VSWVQTF-GAEGLASLLDILKRLHDEKEETSGNYDSRNQHEIIRCLKAFMNNKFGIKTMLETEEGILLLVRAMD-PAVPN 115 (386)
T ss_dssp HHHHHHH-HHHHHHHHHHHHHHHHTCCTTTCCTTHHHHHHHHHHHHHHHTSSHHHHHHHHHSSSHHHHHHHTCC-TTSHH
T ss_pred cHHHHHH-HHhHHHHHHHHHHHHHhcccccccchhHHHHHHHHHHHHHHhCCHHHHHHHHcCcHHHHHHHHHhC-CCCch
Confidence 3455555 4688888887774 11 456778889999999888877777775 456888888886 78899
Q ss_pred HHHHHHHHHHHhhcCch--h-HHHHHh----------cCccHHHHHhhcCCCCHHHHHHHHHHHHHHhcCh---h----H
Q 006114 465 ILRVASGAIANLAMNEM--N-QGLIMS----------RGGGQLLAKTASKTDDPQTLRMVAGALANLCGNE---K----L 524 (660)
Q Consensus 465 v~~~Aa~AL~nLA~~~~--n-~~~Ive----------~g~I~~Ll~LL~~s~d~~v~~~Aa~aLanLa~~~---~----~ 524 (660)
++..++..|+.+|..+. + ...+.+ ..-+..++..+.+..+.+....+...|-.+..++ . .
T Consensus 116 ~r~~vleLL~alc~~~~~~G~~~~VL~Al~~~~~~~e~~RF~~lv~~l~~~~~~e~~~a~m~lIN~lv~~~~dl~~R~~L 195 (386)
T 2bnx_A 116 MMIDAAKLLSALCILPQPEDMNERVLEAMTERAEMDEVERFQPLLDGLKSGTSIALKVGCLQLINALITPAEELDFRVHI 195 (386)
T ss_dssp HHHHHHHHHHHHHTCCSSTTHHHHHHHHHHHHHHHHTSCTTHHHHHHTSTTSCHHHHHHHHHHHHHHHTTCSCHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCCCCChHHHHHHHHHHHHHhCchhhHHHHHHHHHcCChHHHHHHHHHHHHHHHCCCCCHHHHHHH
Confidence 99999999999987743 4 444432 2356678888875566665554444443444322 2 4
Q ss_pred HHHHHhccHHHHHHHHhcCCCHHHHHH
Q 006114 525 HTMLEEDGAIKALLAMVRSGNIDVIAQ 551 (660)
Q Consensus 525 r~~iv~~G~V~~Lv~lL~s~~~~v~~~ 551 (660)
|..+...|..+.+-.+-...++++..+
T Consensus 196 R~Ef~~~GL~~il~~Lr~~~~~~L~~Q 222 (386)
T 2bnx_A 196 RSELMRLGLHQVLQELREIENEDMKVQ 222 (386)
T ss_dssp HHHHHHTTHHHHHHHHTTCCCHHHHHH
T ss_pred HHHHHHCChHHHHHHHhccCChhHHHH
Confidence 555666777776655544566665444
No 125
>3vkg_A Dynein heavy chain, cytoplasmic; AAA+ protein, molecular motor, microtubles, motor protein; HET: ADP SPM; 2.81A {Dictyostelium discoideum} PDB: 3vkh_A*
Probab=93.39 E-value=2.8 Score=56.04 Aligned_cols=143 Identities=16% Similarity=0.165 Sum_probs=72.0
Q ss_pred HhhhhchHHHHHHHHHHHhhhhhhHHHHhhhhhHHHHHHhhHHHHHHHHH-------HHHhhhhhhhhhhhhhhHHhHHH
Q 006114 193 HARSEGAEEQVDTMKKLISDNQKSIEQYEMENSTYQKALADTTQLYEKKI-------AELNKKLEDEHACFEGAVEQLDM 265 (660)
Q Consensus 193 ~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~-------~~~~~~~~~~~~~~~~~~~~~~~ 265 (660)
-..-..+.++|..|+..|...++..++...+....-+.+...++.-+++- +++.++-+.-.++...+++.|+.
T Consensus 1926 L~KL~et~~~V~~l~~~L~~~~~~L~~k~~ea~~~l~~i~~~~~~ae~~k~~v~~~~~~~~~~~~ei~~~k~~~e~dL~~ 2005 (3245)
T 3vkg_A 1926 LKKLRDTEAQVKDLQVSLAQKNRELDVKNEQANQKLKQMVQDQQAAEIKQKDARELQVQLDVRNKEIAVQKVKAYADLEK 2005 (3245)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC--
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 34445678889999999999988777766666654444443333333221 12222222233444455555555
Q ss_pred HHHHhhhhhccccchhHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHhhhhccHHHHHHHHHHHHH
Q 006114 266 VKKLLSDYQNSNQGQKEVHELCVKLKETRQLHESAVYEVQTLKSEYKNLLEEKETMSDELQAARQRLLVE 335 (660)
Q Consensus 266 ~~~~~~~~~~~~~~~~e~~~Lk~~Le~e~~~~e~~e~E~~~lks~l~~l~~~~~~~~eel~~~~k~l~~e 335 (660)
+.-.---.+....-++++...+..|......-..+++.+..||.++......++.+..++....+++..-
T Consensus 2006 A~Pa~Pkr~~l~~ae~~l~~~~~~L~~~~~~L~~le~~l~~L~~~~~~~~~ek~~L~~e~~~~~~kl~rA 2075 (3245)
T 3vkg_A 2006 AEPTGPLREEVEQLENAANELKLKQDEIVATITALEKSIATYKEEYATLIRETEQIKTESSKVKNKVDRS 2075 (3245)
T ss_dssp -----CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4433111122222233334444444444444555555666666666666666666666666555554443
No 126
>3s4r_A Vimentin; alpha-helix, cytoskeleton, intermediate filament, structural; 2.45A {Homo sapiens} PDB: 3ssu_A
Probab=92.88 E-value=0.67 Score=39.75 Aligned_cols=39 Identities=21% Similarity=0.305 Sum_probs=34.3
Q ss_pred HHHHHHHHHHHHHHHHHHhhhhchHHHHHHHHHHHhhhh
Q 006114 176 QMYEKKITELIKQLEIEHARSEGAEEQVDTMKKLISDNQ 214 (660)
Q Consensus 176 ~~~~~~~~~l~~~l~~e~~~~~~~~~~~~~l~~~l~~~~ 214 (660)
.+|+.+|.+|+++++.-...+..++-+++.|...+.+++
T Consensus 52 ~~ye~~i~~Lr~~i~~~~~ek~~l~~e~dnl~~~~~~~k 90 (93)
T 3s4r_A 52 DLYEEEMRELRRQVDQLTNDKARVEVERDNLAEDIMRLR 90 (93)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 468999999999999999999999988888888877776
No 127
>2x19_B Importin-13; nuclear transport, protein transport; HET: GTP; 2.80A {Homo sapiens} PDB: 2xwu_B
Probab=92.88 E-value=2.7 Score=49.48 Aligned_cols=135 Identities=10% Similarity=-0.048 Sum_probs=86.0
Q ss_pred CCCHHHHHHHHHHHHHhhcCchhHHHHHhcCccHHHHHhhcC--CCCHHHHHHHHHHHHHHhcChhHHHHHHhccHHHHH
Q 006114 460 SQNTTILRVASGAIANLAMNEMNQGLIMSRGGGQLLAKTASK--TDDPQTLRMVAGALANLCGNEKLHTMLEEDGAIKAL 537 (660)
Q Consensus 460 s~d~~v~~~Aa~AL~nLA~~~~n~~~Ive~g~I~~Ll~LL~~--s~d~~v~~~Aa~aLanLa~~~~~r~~iv~~G~V~~L 537 (660)
+.+...+..++.+++.++.+.... ....++.++..+.. .++|.++..++++|..++..-....... ..+++.|
T Consensus 460 ~~~w~~~eaal~al~~i~~~~~~~----~~~~l~~l~~~l~~l~~~~~~vr~~~~~~l~~~~~~l~~~~~~l-~~vl~~l 534 (963)
T 2x19_B 460 PYSWQHTEALLYGFQSIAETIDVN----YSDVVPGLIGLIPRISISNVQLADTVMFTIGALSEWLADHPVMI-NSVLPLV 534 (963)
T ss_dssp SCCHHHHHHHHHHHHHHTTSCCSS----CCSHHHHHHHHGGGSCCCSHHHHHHHHHHHHHTHHHHHHCHHHH-TTTHHHH
T ss_pred CCchHHHHHHHHHHHHHHhhcCch----hhHHHHHHHHHHHhCCCCcHHHHHHHHHHHHHHHHHHHhCHHHH-HHHHHHH
Confidence 567788899999999998762210 01222333333211 1578899999999998874311111222 2677888
Q ss_pred HHHhcCCCHHHHHHHHHHHHHhhccchhhhhhcchhhhHHHhh--cChHHHHHHhhcC--CCHHHHHHHHHHHHHhhcC
Q 006114 538 LAMVRSGNIDVIAQVARGLANFAKCESRAIVQGQRKGRSHLME--DSALEWLIANSKT--NSASTRRHVELALCHLAQN 612 (660)
Q Consensus 538 v~lL~s~~~~v~~~Al~aLanLA~~~~~~~aq~~~e~r~~Li~--~G~v~~Lv~lL~s--~d~~vr~~Aa~AL~nLa~~ 612 (660)
+..+.+ +.|+..|+.+|.+||.... ..+.. ...+..|..++.. -+...+..+..+++.++..
T Consensus 535 ~~~l~~--~~V~~~A~~al~~l~~~~~-----------~~l~p~~~~il~~l~~~l~~~~~~~~~~~~~~eai~~i~~~ 600 (963)
T 2x19_B 535 LHALGN--PELSVSSVSTLKKICRECK-----------YDLPPYAANIVAVSQDVLMKQIHKTSQCMWLMQALGFLLSA 600 (963)
T ss_dssp HHHTTC--GGGHHHHHHHHHHHHHHTG-----------GGCTTTHHHHHHHHHHHHHTTCSCHHHHHHHHHHHHHHHTT
T ss_pred HHHhCC--chHHHHHHHHHHHHHHHHH-----------HHHHhhHHHHHHHHHHHhccCCCChHHHHHHHHHHHHHHhc
Confidence 888854 8899999999999994321 11211 2344555556654 3578888889999998753
No 128
>3tnu_A Keratin, type I cytoskeletal 14; coiled-coil, structural support, cytosolic protein; 3.00A {Homo sapiens}
Probab=92.77 E-value=1.1 Score=40.77 Aligned_cols=90 Identities=20% Similarity=0.269 Sum_probs=63.9
Q ss_pred hhHHHHHHHHHHHHHHHHHhhhhchHHHHHHHHHHHhhHHHHHHhhhhhhhHHHHhhhhHHHHHHHHHhhhhhhhhhhhh
Q 006114 63 DNLVTQVELLTAKIEMQQKLRENDKYEFEKQLRESQISYDESMRNLVTRSEFLEKENAHLELEVEKILGELNHQKDQNNL 142 (660)
Q Consensus 63 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 142 (660)
..++.+|..|+++|+-.... +..||..|.+.+..|.-.+..+..+. .+||.++.+++.++.+|..
T Consensus 41 ~elrr~iq~L~~el~~l~~~----~~sLE~~l~e~e~~~~~~l~~~q~~i-------~~lE~eL~~~r~em~~ql~---- 105 (131)
T 3tnu_A 41 SELRRTMQNLEIELQSQLSM----KASLENSLEETKGRYCMQLAQIQEMI-------GSVEEQLAQLRCEMEQQNQ---- 105 (131)
T ss_dssp CHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHH----
T ss_pred HHHHHHHHHHHHHHHHHHhh----HHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHH----
Confidence 34777888999999887766 88999999999999998877666653 4455555555555544421
Q ss_pred HHHHHHHHHHHhhhhhhhhhhhhhhHHHHHHhhHHHHHHHHHHHHHHHH
Q 006114 143 KREKIVQLEISLKNSKQQQLDNSSYQKVLADTTQMYEKKITELIKQLEI 191 (660)
Q Consensus 143 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~ 191 (660)
-|+.|-+.+-.++.||+--++.||-
T Consensus 106 ------------------------EYq~Ll~vKl~Ld~EIatYRkLLEG 130 (131)
T 3tnu_A 106 ------------------------EYKILLDVKTRLEQEIATYRRLLEG 130 (131)
T ss_dssp ------------------------HHHHHHHHHHHHHHHHHHHHHHTTC
T ss_pred ------------------------HHHHHHHHHHHHHHHHHHHHHhHCc
Confidence 1345566667778888888877753
No 129
>2fxo_A Myosin heavy chain, cardiac muscle beta isoform; coiled coil (dimeric, parallel), familial hypertrophic cardiomyopathy, FHC-associated mutant E924K; 2.50A {Homo sapiens} SCOP: h.1.26.1 PDB: 2fxm_A
Probab=92.72 E-value=3.3 Score=37.37 Aligned_cols=39 Identities=26% Similarity=0.278 Sum_probs=18.8
Q ss_pred HHHHHHHHHHHHHHHHHHhhhhchHHHHHHHHHHHhhhh
Q 006114 176 QMYEKKITELIKQLEIEHARSEGAEEQVDTMKKLISDNQ 214 (660)
Q Consensus 176 ~~~~~~~~~l~~~l~~e~~~~~~~~~~~~~l~~~l~~~~ 214 (660)
..++.+++.+...|+.....+..++++...|.....+++
T Consensus 16 ~~~~eel~~lke~l~k~e~~r~ele~~~~~l~~Ek~~L~ 54 (129)
T 2fxo_A 16 ASMKEEFTRLKEALEKSEARRKELEEKMVSLLQEKNDLQ 54 (129)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334444444555555444444545554444444444444
No 130
>2bnx_A Diaphanous protein homolog 1; autoinhibition, actin, nucleation, cytoskeleton, structural; 2.4A {Mus musculus} SCOP: a.118.1.23 PDB: 3o4x_A 3obv_A* 2bap_B
Probab=92.67 E-value=1.8 Score=46.38 Aligned_cols=150 Identities=15% Similarity=0.134 Sum_probs=96.9
Q ss_pred cCCHHHHHHHHccC----------CCHHHHHHHHHHHHHhhcCchhHHHHHh-cCccHHHHHhhcCCCCHHHHHHHHHHH
Q 006114 447 EGGLDALLLLLRTS----------QNTTILRVASGAIANLAMNEMNQGLIMS-RGGGQLLAKTASKTDDPQTLRMVAGAL 515 (660)
Q Consensus 447 ~GgI~~Lv~LL~~s----------~d~~v~~~Aa~AL~nLA~~~~n~~~Ive-~g~I~~Ll~LL~~s~d~~v~~~Aa~aL 515 (660)
.||+..|+.+|... .+......+..||..|..+..+...++. .++|..++..| +++++.++..|+..|
T Consensus 46 ~~Gl~~Ll~~L~~~~~~~~~~~~~~d~~~~~~~l~CLkalmN~~~Gl~~vl~~~~~i~~l~~sL-~s~~~~~r~~vleLL 124 (386)
T 2bnx_A 46 AEGLASLLDILKRLHDEKEETSGNYDSRNQHEIIRCLKAFMNNKFGIKTMLETEEGILLLVRAM-DPAVPNMMIDAAKLL 124 (386)
T ss_dssp HHHHHHHHHHHHHHHTCCTTTCCTTHHHHHHHHHHHHHHHTSSHHHHHHHHHSSSHHHHHHHTC-CTTSHHHHHHHHHHH
T ss_pred HhHHHHHHHHHHHHHhcccccccchhHHHHHHHHHHHHHHhCCHHHHHHHHcCcHHHHHHHHHh-CCCCchHHHHHHHHH
Confidence 67888888887421 1456777899999999888777777665 66788888888 468899999999889
Q ss_pred HHHhcChh--H-HHHHHh----------ccHHHHHHHHhc-CCCHHHHHHHHHHHHHhhccchhhhhhcchhhhHHHhhc
Q 006114 516 ANLCGNEK--L-HTMLEE----------DGAIKALLAMVR-SGNIDVIAQVARGLANFAKCESRAIVQGQRKGRSHLMED 581 (660)
Q Consensus 516 anLa~~~~--~-r~~iv~----------~G~V~~Lv~lL~-s~~~~v~~~Al~aLanLA~~~~~~~aq~~~e~r~~Li~~ 581 (660)
+.+|..+. + +..+.+ ..-+..+++.+. +.+.+....++..|-.|..+.++.-. .-..|..+...
T Consensus 125 ~alc~~~~~~G~~~~VL~Al~~~~~~~e~~RF~~lv~~l~~~~~~e~~~a~m~lIN~lv~~~~dl~~--R~~LR~Ef~~~ 202 (386)
T 2bnx_A 125 SALCILPQPEDMNERVLEAMTERAEMDEVERFQPLLDGLKSGTSIALKVGCLQLINALITPAEELDF--RVHIRSELMRL 202 (386)
T ss_dssp HHHHTCCSSTTHHHHHHHHHHHHHHHHTSCTTHHHHHHTSTTSCHHHHHHHHHHHHHHHTTCSCHHH--HHHHHHHHHHT
T ss_pred HHHHcCCCCCChHHHHHHHHHHHHHhCchhhHHHHHHHHHcCChHHHHHHHHHHHHHHHCCCCCHHH--HHHHHHHHHHC
Confidence 88885543 4 444432 124445777776 44556655555555444443332111 12456667777
Q ss_pred ChHHHHHHhhcCCCHHHH
Q 006114 582 SALEWLIANSKTNSASTR 599 (660)
Q Consensus 582 G~v~~Lv~lL~s~d~~vr 599 (660)
|..+.+-.+-...++.+.
T Consensus 203 GL~~il~~Lr~~~~~~L~ 220 (386)
T 2bnx_A 203 GLHQVLQELREIENEDMK 220 (386)
T ss_dssp THHHHHHHHTTCCCHHHH
T ss_pred ChHHHHHHHhccCChhHH
Confidence 777776655444555543
No 131
>3tnu_B Keratin, type II cytoskeletal 5; coiled-coil, structural support, cytosolic protein; 3.00A {Homo sapiens}
Probab=92.29 E-value=1 Score=40.73 Aligned_cols=89 Identities=16% Similarity=0.197 Sum_probs=62.6
Q ss_pred hhHHHHHHHHHHHHHHHHHhhhhchHHHHHHHHHHHhhHHHHHHhhhhhhhHHHHhhhhHHHHHHHHHhhhhhhhhhhhh
Q 006114 63 DNLVTQVELLTAKIEMQQKLRENDKYEFEKQLRESQISYDESMRNLVTRSEFLEKENAHLELEVEKILGELNHQKDQNNL 142 (660)
Q Consensus 63 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 142 (660)
..++.+|..|+++|+-.... +..||+.|.+.+..|.-.+..+..+. .+||.++.+++.++.+|..
T Consensus 39 ~elrr~iq~L~~el~~l~~~----~~~LE~~l~e~e~~~~~~l~~~q~~i-------~~lE~eL~~~r~e~~~ql~---- 103 (129)
T 3tnu_B 39 SEMNRMIQRLRAEIDNVKKQ----CANLQNAIADAEQRGELALKDARNKL-------AELEEALQKAKQDMARLLR---- 103 (129)
T ss_dssp HHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHH----
T ss_pred HHHHHHHHHHHHHHHHHHhH----HHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHhHHHHHHHHHHHHH----
Confidence 34777889999999888777 88999999999999998877666664 4455555555555544421
Q ss_pred HHHHHHHHHHHhhhhhhhhhhhhhhHHHHHHhhHHHHHHHHHHHHHHH
Q 006114 143 KREKIVQLEISLKNSKQQQLDNSSYQKVLADTTQMYEKKITELIKQLE 190 (660)
Q Consensus 143 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~ 190 (660)
-|+.|-+.+-.++.||+--++.||
T Consensus 104 ------------------------EYq~LlnvKl~Ld~EIatYRkLLE 127 (129)
T 3tnu_B 104 ------------------------EYQELMNTKLALDVEIATYRKLLE 127 (129)
T ss_dssp ------------------------HHHHHHHHHHHHHHHHHHHHHTTC
T ss_pred ------------------------HHHHHHHHHHHHHHHHHHHHHhHC
Confidence 133555666677777777777665
No 132
>4hat_C Exportin-1; heat repeat, nuclear export, RAN-ranbp1, LMB, leptomycin B, protein transport-antibiotic complex; HET: GNP LMB; 1.78A {Saccharomyces cerevisiae} PDB: 4hau_C* 4hav_C* 4hb2_C* 4hax_C* 4haw_C* 4hay_C* 4hb3_C* 4haz_C* 4hb4_C* 3m1i_C* 4hb0_C* 4gmx_C* 4gpt_C* 3vyc_A 2l1l_B
Probab=91.63 E-value=0.81 Score=55.30 Aligned_cols=139 Identities=6% Similarity=-0.033 Sum_probs=83.8
Q ss_pred CCHHHHHHHHHHHHHhhCCch-h--HHHHHHcCCHHHHHHHHccCC----CHHHHHHHHHHHHHhhcC-chhHHHHHhcC
Q 006114 419 EDPDVQIHAVKVVANLAAEDI-N--QEKIVEEGGLDALLLLLRTSQ----NTTILRVASGAIANLAMN-EMNQGLIMSRG 490 (660)
Q Consensus 419 ~d~~vr~~Aa~aL~nLa~~~e-n--~~~Ive~GgI~~Lv~LL~~s~----d~~v~~~Aa~AL~nLA~~-~~n~~~Ive~g 490 (660)
.+...+.+++++++.++.... . ...+.. .++.|+.++.... .+.++..++++|+..+.. ..+.. .. ..
T Consensus 465 ~~W~~~EA~~~a~gaIa~~~~~~~e~~~l~~--vi~~Ll~l~~~~~~~d~k~~v~~t~~~~lGry~~wl~~~~~-~L-~~ 540 (1023)
T 4hat_C 465 WSWHNINTLSWAIGSISGTMSEDTEKRFVVT--VIKDLLDLCVKKRGKDNKAVVASDIMYVVGQYPRFLKAHWN-FL-RT 540 (1023)
T ss_dssp CCHHHHHHHHHHHHHTTTSSCHHHHHHHHHH--HHHHHHHHHHHCCSHHHHHHHHHHHHHHHHTCHHHHHHCHH-HH-HH
T ss_pred CCHHHHHHHHHHHHHHHcCCCchhHHHHHHH--HHHHHHHhhhccccCcchHHHHHHHHHHHHHHHHHHhccHH-HH-HH
Confidence 578899999999999998432 2 222223 5888888885322 233444567888776543 11111 11 22
Q ss_pred ccHHHHHhhcCCCCHHHHHHHHHHHHHHhcChhHHHHHHh------ccHHHHH----HHHhcCCCHHHHHHHHHHHHHhh
Q 006114 491 GGQLLAKTASKTDDPQTLRMVAGALANLCGNEKLHTMLEE------DGAIKAL----LAMVRSGNIDVIAQVARGLANFA 560 (660)
Q Consensus 491 ~I~~Ll~LL~~s~d~~v~~~Aa~aLanLa~~~~~r~~iv~------~G~V~~L----v~lL~s~~~~v~~~Al~aLanLA 560 (660)
++..|+..+.+ ++|.++.+||+++.+||.. .+..++. ...++.+ ......-.+.-...+..+++.+.
T Consensus 541 vl~~L~~~l~~-~~~~v~~~A~~al~~l~~~--c~~~l~~~~~~e~~p~~~~il~~l~~~~~~l~~~~~~~lyeai~~vi 617 (1023)
T 4hat_C 541 VILKLFEFMHE-THEGVQDMACDTFIKIVQK--CKYHFVIQQPRESEPFIQTIIRDIQKTTADLQPQQVHTFYKACGIII 617 (1023)
T ss_dssp HHHHHHHHTTC-SCHHHHHHHHHHHHHHHHH--HTHHHHSCCTTCSSCHHHHHHHTHHHHHTTSCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhhc-CCHHHHHHHHHHHHHHHHH--HHHHhhccCCCCCchhHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHH
Confidence 34445555533 5789999999999999952 3334442 1133333 33334456677778888888887
Q ss_pred ccch
Q 006114 561 KCES 564 (660)
Q Consensus 561 ~~~~ 564 (660)
..-+
T Consensus 618 ~~~~ 621 (1023)
T 4hat_C 618 SEER 621 (1023)
T ss_dssp TTCC
T ss_pred HhCC
Confidence 6543
No 133
>3c2g_A SYS-1 protein; beta-catenin, phylogeny, SYS-1, developmental protein, DNA-binding, nucleus; 2.50A {Caenorhabditis elegans} PDB: 3c2h_A*
Probab=91.42 E-value=0.87 Score=48.11 Aligned_cols=122 Identities=16% Similarity=0.196 Sum_probs=92.6
Q ss_pred CchhHHHHHhCCCHHHHHHhhCCCCHHHHHHHHHHHHHhhCCchhHHHHHHcCCHHHHHHHHccCCCHHHHHHHHHHHHH
Q 006114 396 QRATIAKICDEVGLPKILQLLTSEDPDVQIHAVKVVANLAAEDINQEKIVEEGGLDALLLLLRTSQNTTILRVASGAIAN 475 (660)
Q Consensus 396 ~~~~~~~I~e~ggI~~LV~LL~s~d~~vr~~Aa~aL~nLa~~~en~~~Ive~GgI~~Lv~LL~~s~d~~v~~~Aa~AL~n 475 (660)
++..+..++...|+..+...+.-++.++-+..++.|...+.....+..-. ...+|.++..+.-+++.+|.....+.|.|
T Consensus 273 dSnAIDGFVk~DGv~~I~TvinYpN~~l~RaG~KLLLQVSDaksL~~t~L-~e~LPFi~~~i~~h~eDdvvYSGTGFLSN 351 (619)
T 3c2g_A 273 DSDAIDGFVRSDGVGAITTVVQYPNNDLIRAGCKLLLQVSDAKALAKTPL-ENILPFLLRLIEIHPDDEVIYSGTGFLSN 351 (619)
T ss_dssp SHHHHHHHHHTTHHHHHHHHTTSSCHHHHHHHHHHHHHHTTCGGGGTSCC-TTHHHHHHHHHHHCCCHHHHHHHHHHHHH
T ss_pred ccccccceeecccceeEEEEeecCCcHHHHhhhheeeeecchHHHhhccc-cccchHHHHHhccCCCcceEEecchHHHH
Confidence 34467789999999999999999999999999999987776543322111 12488899999888999999999999999
Q ss_pred hhcCc-hhHHHHHhcCccHHHHHhhcCC------CCHHHHHHHHHHHHHH
Q 006114 476 LAMNE-MNQGLIMSRGGGQLLAKTASKT------DDPQTLRMVAGALANL 518 (660)
Q Consensus 476 LA~~~-~n~~~Ive~g~I~~Ll~LL~~s------~d~~v~~~Aa~aLanL 518 (660)
...+. ..++..+..|+|+.|...+..+ .+..-+..||+.++|.
T Consensus 352 VVAHKq~VKelAI~~nAI~LLh~~I~ky~~Lsdf~ea~Kkk~aC~IicN~ 401 (619)
T 3c2g_A 352 VVAHKQHVKDIAIRSNAIFLLHTIISKYPRLDELTDAPKRNRVCEIICNC 401 (619)
T ss_dssp HSTTCHHHHHHHHHTTHHHHHHHHHHTSCCGGGCCSHHHHHHHHHHHHHH
T ss_pred HHhcccchHHHHhccCcHHHHHHHHhhCCChhhhhhhhhhcchHHHHHHH
Confidence 98884 4456666789999998877543 3344456677766654
No 134
>2fxo_A Myosin heavy chain, cardiac muscle beta isoform; coiled coil (dimeric, parallel), familial hypertrophic cardiomyopathy, FHC-associated mutant E924K; 2.50A {Homo sapiens} SCOP: h.1.26.1 PDB: 2fxm_A
Probab=91.25 E-value=6.5 Score=35.42 Aligned_cols=81 Identities=19% Similarity=0.149 Sum_probs=50.6
Q ss_pred hHHHHhhhhHHHHHHHHHhhhhhhhhhhhhHHHHHHHHHHHhhhhhhhhhhhhhhHHHHHHhhHHHHHHHHHHHHHHHHH
Q 006114 113 EFLEKENAHLELEVEKILGELNHQKDQNNLKREKIVQLEISLKNSKQQQLDNSSYQKVLADTTQMYEKKITELIKQLEIE 192 (660)
Q Consensus 113 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~e 192 (660)
..|+..+..|..|+.+|..+|+...+......+ +..-+......++.+|+++...|+++
T Consensus 37 ~ele~~~~~l~~Ek~~L~~qL~~E~~~l~e~EE---------------------~~~~L~~~k~eLe~~l~el~~rleee 95 (129)
T 2fxo_A 37 KELEEKMVSLLQEKNDLQLQVQAEQDNLADAEE---------------------RCDQLIKNKIQLEAKVKEMNKRLEDE 95 (129)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---------------------HHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHH---------------------HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 355677777788877777777765554333222 23345666777888888888888877
Q ss_pred HhhhhchHHHHHHHHHHHhhhh
Q 006114 193 HARSEGAEEQVDTMKKLISDNQ 214 (660)
Q Consensus 193 ~~~~~~~~~~~~~l~~~l~~~~ 214 (660)
-..+..+..+-..|+...++++
T Consensus 96 ee~~~~L~~~kkkle~e~~~Lk 117 (129)
T 2fxo_A 96 EEMNAELTAKKRKLEDECSELK 117 (129)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 7665555554444444444444
No 135
>1lrv_A LRV, leucine-rich repeat variant; leucine-rich repeats, repetitive structure, iron sulfur proteins, nitrogen fixation; 2.60A {Azotobacter vinelandii} SCOP: a.118.1.5
Probab=91.23 E-value=0.18 Score=50.80 Aligned_cols=54 Identities=19% Similarity=0.211 Sum_probs=30.9
Q ss_pred HHHHHHcCCHHHHHHHHccCCCHHHHHHHHHHHHHhhcCchhHHHHHhcCccHHHHHhhcCCCCHHHHHHHHH
Q 006114 441 QEKIVEEGGLDALLLLLRTSQNTTILRVASGAIANLAMNEMNQGLIMSRGGGQLLAKTASKTDDPQTLRMVAG 513 (660)
Q Consensus 441 ~~~Ive~GgI~~Lv~LL~~s~d~~v~~~Aa~AL~nLA~~~~n~~~Ive~g~I~~Ll~LL~~s~d~~v~~~Aa~ 513 (660)
+......-+...|..++. ++++.|+..++..|. .+.|..++.+ +++.|+..++.
T Consensus 67 R~~AA~~l~~~~l~~L~~-D~~~~VR~~aA~~L~-----------------~~~L~~ll~D-~d~~VR~~aA~ 120 (244)
T 1lrv_A 67 RAIAVRYSPVEALTPLIR-DSDEVVRRAVAYRLP-----------------REQLSALMFD-EDREVRITVAD 120 (244)
T ss_dssp HHHHHTTSCGGGGGGGTT-CSSHHHHHHHHTTSC-----------------SGGGGGTTTC-SCHHHHHHHHH
T ss_pred HHHHHHhCCHHHHHHHcc-CcCHHHHHHHHHHCC-----------------HHHHHHHHcC-CCHHHHHHHHH
Confidence 444444333444555554 788888888876421 1345555543 66677766665
No 136
>3l9t_A Putative uncharacterized protein SMU.31; hypothetical protein, unknown function; HET: EPE; 2.21A {Streptococcus mutans}
Probab=90.81 E-value=2.9 Score=41.88 Aligned_cols=134 Identities=13% Similarity=0.078 Sum_probs=93.2
Q ss_pred HhhCCCCHHHHHHHHHHHHHhhCCchhHHHHHHcCCHHHHHHHHccCCCHHHHHHHHHHHHHhhc--CchhHHHHHhcCc
Q 006114 414 QLLTSEDPDVQIHAVKVVANLAAEDINQEKIVEEGGLDALLLLLRTSQNTTILRVASGAIANLAM--NEMNQGLIMSRGG 491 (660)
Q Consensus 414 ~LL~s~d~~vr~~Aa~aL~nLa~~~en~~~Ive~GgI~~Lv~LL~~s~d~~v~~~Aa~AL~nLA~--~~~n~~~Ive~g~ 491 (660)
.|.+++...+|..|+.+|+.+ . + . ...++.+...+..+++=.|+..++.++..++. +|+ ..
T Consensus 78 ~L~~~~~deVR~~Av~lLg~~-~-~-~------~~~L~~ir~~va~D~~WrVre~lA~a~~~~~~~~~pe--------~~ 140 (240)
T 3l9t_A 78 LAYQSDVYQVRMYAVFLFGYL-S-K-D------KEILIFMRDEVSKDNNWRVQEVLAKAFDEFCKKIEYK--------KA 140 (240)
T ss_dssp HHHTCSSHHHHHHHHHHHHHT-T-T-S------HHHHHHHHHTGGGCSCHHHHHHHHHHHHHHHHHHCTT--------TT
T ss_pred HHHhCcchHHHHHHHHHHHhc-c-C-c------HHHHHHHHHHhCCCCCccHHHHHHHHHHHHHHhcCHH--------HH
Confidence 455677789999999988877 2 1 1 11355555545557778899999999999874 444 14
Q ss_pred cHHHHHhhcCCCCHHHHHHHHHHHHHHhcChhHHHHHHhccHHHHHHHHhcCCCHHHHHHHHHHHHHhhccchhhh
Q 006114 492 GQLLAKTASKTDDPQTLRMVAGALANLCGNEKLHTMLEEDGAIKALLAMVRSGNIDVIAQVARGLANFAKCESRAI 567 (660)
Q Consensus 492 I~~Ll~LL~~s~d~~v~~~Aa~aLanLa~~~~~r~~iv~~G~V~~Lv~lL~s~~~~v~~~Al~aLanLA~~~~~~~ 567 (660)
++.+...+.+ +++.|++.|+..+..+|.-+.... .-.-++|.|-.+..+++.-|+..+..+|..++..+|+.+
T Consensus 141 l~~~~~W~~d-~n~~VRR~Ase~~rpW~~~~~~k~--dp~~ll~iL~~L~~D~s~yVrKSVan~LrD~SK~~Pd~V 213 (240)
T 3l9t_A 141 LPIIDEWLKS-SNLHTRRAATEGLRIWTNRPYFKE--NPNEAIRRIADLKEDVSEYVRKSVGNALRDISKKFPDLV 213 (240)
T ss_dssp HHHHHHHHHC-SSHHHHHHHHHHTCSGGGSTTTTT--CHHHHHHHHHTTTTCSCHHHHHHHHHHHHHHHTTCHHHH
T ss_pred HHHHHHHhcC-CCHHHHHHHHHhhHHHhccchhhc--CHHHHHHHHHHhcCChHHHHHHHHHHHHHHHhhhCHHHH
Confidence 5667777764 899999999988766653221110 011245555566667888999999999999999988643
No 137
>3gjx_A Exportin-1; transport, cytoplasm, nucleus, RNA-binding, acetylation, GTP-binding, HOST-virus interaction, nucleotide-binding, phosphoprotein; HET: GTP; 2.50A {Mus musculus} PDB: 3nby_A* 3nbz_A* 3nc0_A* 3nc1_A* 3gb8_A
Probab=90.75 E-value=4.7 Score=48.91 Aligned_cols=224 Identities=14% Similarity=0.052 Sum_probs=132.7
Q ss_pred CHHHHHHhhCCCCHHHHHHHHHHHHHhhCCchhHHHHHHcCCHHHHHHHHccCCCHHHHHHHHHHHHHhhcC-----chh
Q 006114 408 GLPKILQLLTSEDPDVQIHAVKVVANLAAEDINQEKIVEEGGLDALLLLLRTSQNTTILRVASGAIANLAMN-----EMN 482 (660)
Q Consensus 408 gI~~LV~LL~s~d~~vr~~Aa~aL~nLa~~~en~~~Ive~GgI~~Lv~LL~~s~d~~v~~~Aa~AL~nLA~~-----~~n 482 (660)
.+..++..+-+++...|..|-..|..+-.+|+ +...+..+|..+.++.++-.|+..|.+.... +..
T Consensus 29 ~Le~lv~~ly~p~~~~r~qA~~~L~q~q~sp~---------aw~~~~~iL~~s~~~~vR~fAa~~L~~~I~~~W~~L~~e 99 (1073)
T 3gjx_A 29 LLDNVVNCLYHGEGAQQRMAQEVLTHLKEHPD---------AWTRVDTILEFSQNMNTKYYGLQILENVIKTRWKILPRN 99 (1073)
T ss_dssp HHHHHHHTTTCSSHHHHHHHHHHHHTSSCCSC---------HHHHHTCC---CCSHHHHHHHHHHHHHHHHHTGGGSCHH
T ss_pred HHHHHHHHHhCCCHHHHHHHHHHHHHHHcCch---------HHHHHHHHhcCCCCHHHHHHHHHHHHHHHHhhhhhCCHH
Confidence 35566666667778888888888876666553 3444455566667899999999999987652 444
Q ss_pred HHHHHhcCccHHHHHhhcCC----CCHHHHHHHHHHHHHHh--cChhHHHHHHhccHHHHHHHHhcCCCHHHHHHHHHHH
Q 006114 483 QGLIMSRGGGQLLAKTASKT----DDPQTLRMVAGALANLC--GNEKLHTMLEEDGAIKALLAMVRSGNIDVIAQVARGL 556 (660)
Q Consensus 483 ~~~Ive~g~I~~Ll~LL~~s----~d~~v~~~Aa~aLanLa--~~~~~r~~iv~~G~V~~Lv~lL~s~~~~v~~~Al~aL 556 (660)
....+....+..+.....++ .++.++...+.+++.++ ..|.. -.+.++-++..+.+ ++..+..++.+|
T Consensus 100 ~~~~LR~~Ll~~l~~~~~~~~~~e~~~~vinKLa~~La~I~k~~~P~~-----Wp~fi~dLv~~~~~-~~~~~~~~L~IL 173 (1073)
T 3gjx_A 100 QCEGIKKYVVGLIIKTSSDPTCVEKEKVYIGKLNMILVQILKQEWPKH-----WPTFISDIVGASRT-SESLCQNNMVIL 173 (1073)
T ss_dssp HHHHHHHHHHHHHHHHHTCGGGGTSCHHHHHHHHHHHHHHHHHHTTTT-----CTTHHHHHHHHHHH-CHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHccCccccccchHHHHHHHHHHHHHHHHhChhh-----ccHHHHHHHHHhCC-CHHHHHHHHHHH
Confidence 44445555666666654321 35677777777887776 22221 23566666666643 455566677777
Q ss_pred HHhhcc--c--hhhhhh-cchhhhHHHhhc--ChHHHHHHhhc-CCCHHHHHHHHHHHHHhhcCCccHHHHHhcCcHHHH
Q 006114 557 ANFAKC--E--SRAIVQ-GQRKGRSHLMED--SALEWLIANSK-TNSASTRRHVELALCHLAQNEDNARDFISRGGAKEL 628 (660)
Q Consensus 557 anLA~~--~--~~~~aq-~~~e~r~~Li~~--G~v~~Lv~lL~-s~d~~vr~~Aa~AL~nLa~~~e~~~~Ive~G~l~~L 628 (660)
..|+.. + ....++ -....+..+... .+++.+..++. ..++.+...+..+|..+..|-+. ..++..+.++.|
T Consensus 174 ~~L~EEV~d~~~~~l~~~r~~~lk~~L~~~~~~Il~ll~~iL~~~~~~~lv~~~L~~L~~~~sWI~i-~~i~~~~ll~~L 252 (1073)
T 3gjx_A 174 KLLSEEVFDFSSGQITQVKAKHLKDSMCNEFSQIFQLCQFVMENSQNAPLVHATLETLLRFLNWIPL-GYIFETKLISTL 252 (1073)
T ss_dssp HHHHHHHTTSHHHHBCHHHHHHHHHHHHHTCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHTTTSCT-HHHHSSSHHHHH
T ss_pred HHHHHHHHhcccccccHHHHHHHHHHHHHHHHHHHHHHHHHhcccCCHHHHHHHHHHHHHHHHhcCH-HHhccchHHHHH
Confidence 776632 0 000000 011223333332 23333344443 35678888888999999888743 456778888877
Q ss_pred H-HHHhcCChHHHHHHHHHHHhc
Q 006114 629 V-QISIESSREDIRNLAKKTMKS 650 (660)
Q Consensus 629 v-~lL~s~s~~~ir~~A~~~L~~ 650 (660)
+ .++ +.+.++..|...|..
T Consensus 253 ~~~~L---~~~~~r~aA~dcL~e 272 (1073)
T 3gjx_A 253 IYKFL---NVPMFRNVSLKCLTE 272 (1073)
T ss_dssp HHHTS---SSHHHHHHHHHHHHH
T ss_pred HHHhc---CChHHHHHHHHHHHH
Confidence 3 555 335577777766543
No 138
>2x1g_F Cadmus; transport protein, developmental protein, mRNA processing, nuclear transport, mRNA splicing, mRNA transport; 3.35A {Drosophila melanogaster}
Probab=90.49 E-value=2.8 Score=49.63 Aligned_cols=169 Identities=14% Similarity=0.017 Sum_probs=94.8
Q ss_pred HHHHHHHHHHHHhhCCchhHHHHHHcCCHHHHHHHHcc----CCCHHHHHHHHHHHHHhhcCchhHHHHHhcCccHHHHH
Q 006114 422 DVQIHAVKVVANLAAEDINQEKIVEEGGLDALLLLLRT----SQNTTILRVASGAIANLAMNEMNQGLIMSRGGGQLLAK 497 (660)
Q Consensus 422 ~vr~~Aa~aL~nLa~~~en~~~Ive~GgI~~Lv~LL~~----s~d~~v~~~Aa~AL~nLA~~~~n~~~Ive~g~I~~Ll~ 497 (660)
..|..++.+|..++..-.. .+... .++.+-..+.. .++-..++.|+.+++.++....... ...++.++.
T Consensus 436 ~~R~~~~~~l~~~~~~~~~--~~l~~-~~~~l~~~l~~~~~~~~~w~~~eaal~~l~~iae~~~~~~----~~~l~~l~~ 508 (971)
T 2x1g_F 436 CYRQDISDTFMYCYDVLND--YILEI-LAAMLDEAIADLQRHPTHWTKLEACIYSFQSVAEHFGGEE----KRQIPRLMR 508 (971)
T ss_dssp HHHHHHHHHHHHHHTTCTT--HHHHH-HHHHHHHHHHHHHHCTTCCHHHHHHHHHHHHTTTC----------CHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHhH--HHHHH-HHHHHHHHHHhccCCCCcHHHHHHHHHHHHHHHhhcChhh----hHHHHHHHH
Confidence 3566677777776652211 11110 12222222321 2455678889999999987622111 122333333
Q ss_pred hh---c-CCCCHHHHHHHHHHHHHHhcChhHHHHHHhccHHHHHHHHhcCCCHHHHHHHHHHHHHhhccchhhhhhcchh
Q 006114 498 TA---S-KTDDPQTLRMVAGALANLCGNEKLHTMLEEDGAIKALLAMVRSGNIDVIAQVARGLANFAKCESRAIVQGQRK 573 (660)
Q Consensus 498 LL---~-~s~d~~v~~~Aa~aLanLa~~~~~r~~iv~~G~V~~Lv~lL~s~~~~v~~~Al~aLanLA~~~~~~~aq~~~e 573 (660)
++ . +.++|.++..++++|..++..-....... ..+++.|+..+. +.|+..|+.++.+||....
T Consensus 509 ~l~~l~~~d~~~~vr~~a~~~l~~~~~~l~~~~~~l-~~vl~~l~~~l~---~~v~~~A~~al~~l~~~~~--------- 575 (971)
T 2x1g_F 509 VLAEIPYEKLNVKLLGTALETMGSYCNWLMENPAYI-PPAINLLVRGLN---SSMSAQATLGLKELCRDCQ--------- 575 (971)
T ss_dssp HHHHSCTTTSCHHHHHHHHHHHHHTHHHHC----CH-HHHHHHHHHHHH---SSCHHHHHHHHHHHHHHCH---------
T ss_pred HHHhcCccccCHHHHHHHHHHHHHHHHHHhcCHHHH-HHHHHHHHHHhC---hHHHHHHHHHHHHHHHHHH---------
Confidence 22 2 12488999999999998873211001111 145667777773 7799999999999994321
Q ss_pred hhHHHhh--cChHHHHHHhhcC--CCHHHHHHHHHHHHHhhcC
Q 006114 574 GRSHLME--DSALEWLIANSKT--NSASTRRHVELALCHLAQN 612 (660)
Q Consensus 574 ~r~~Li~--~G~v~~Lv~lL~s--~d~~vr~~Aa~AL~nLa~~ 612 (660)
..+.. .+.+..+..++.. .+...+..+..+++.++..
T Consensus 576 --~~l~p~~~~ll~~l~~~l~~~~~~~~~~~~~~~ai~~i~~~ 616 (971)
T 2x1g_F 576 --LQLKPYADPLLNACHASLNTGRMKNSDSVRLMFSIGKLMSL 616 (971)
T ss_dssp --HHHHHHHHHHHHHHHHHHHSTTSCHHHHHHHHHHHHHHHHT
T ss_pred --HhccccHHHHHHHHHHHHcCCCCChHHHHHHHHHHHHHHHh
Confidence 12221 3455566666666 3578888888888888653
No 139
>3m1i_C Exportin-1; heat repeat, GTP-binding, nucleotide-binding, NUCL protein transport, transport, cytoplasm, GTPase activation; HET: GTP; 2.00A {Saccharomyces cerevisiae} PDB: 2l1l_B
Probab=90.48 E-value=3.4 Score=49.66 Aligned_cols=101 Identities=10% Similarity=-0.040 Sum_probs=62.2
Q ss_pred CCHHHHHHHHHHHHHhhcC-chhHHHHHhcCccHHHHHhhcC----CCCHHHHHHHHHHHHHHhcChhHHHHHHhccHHH
Q 006114 461 QNTTILRVASGAIANLAMN-EMNQGLIMSRGGGQLLAKTASK----TDDPQTLRMVAGALANLCGNEKLHTMLEEDGAIK 535 (660)
Q Consensus 461 ~d~~v~~~Aa~AL~nLA~~-~~n~~~Ive~g~I~~Ll~LL~~----s~d~~v~~~Aa~aLanLa~~~~~r~~iv~~G~V~ 535 (660)
.+-..+..|+.+++.++.. ......-.-..+++.|+.+... .++|-++..++++++..+..-........ .+++
T Consensus 465 ~~W~~~eaal~algsia~~~~~~~e~~~l~~v~~~l~~l~~~~~~~~~~~~v~~~~~~~lgry~~~~~~~~~~l~-~vl~ 543 (1049)
T 3m1i_C 465 WSWHNINTLSWAIGSISGTMSEDTEKRFVVTVIKDLLDLTVKKRGKDNKAVVASDIMYVVGQYPRFLKAHWNFLR-TVIL 543 (1049)
T ss_dssp CCHHHHHHHHHHHHHTTTSSCHHHHHHHHHHHHHHHHHHTTSSCSHHHHHHHHHHHHHHHHHCHHHHHHCHHHHH-HHHH
T ss_pred CCHHHHHHHHHHHHHHhcccCchhhHHHHHHHHHHHHHHHhhhccccchHHHHHHHHHHHHHHHHHHHhHHHHHH-HHHH
Confidence 5667888999999999865 1111111112244555553321 12344444577888877632111122222 4677
Q ss_pred HHHHHhcCCCHHHHHHHHHHHHHhhcc
Q 006114 536 ALLAMVRSGNIDVIAQVARGLANFAKC 562 (660)
Q Consensus 536 ~Lv~lL~s~~~~v~~~Al~aLanLA~~ 562 (660)
.|+..+.++++.|+..|+.+|.+||..
T Consensus 544 ~ll~~l~~~~~~V~~~A~~al~~l~~~ 570 (1049)
T 3m1i_C 544 KLFEFMHETHEGVQDMACDTFIKIVQK 570 (1049)
T ss_dssp HHHHHTTSSCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHhcCCCHHHHHHHHHHHHHHHHH
Confidence 788888888999999999999999953
No 140
>3tnu_B Keratin, type II cytoskeletal 5; coiled-coil, structural support, cytosolic protein; 3.00A {Homo sapiens}
Probab=90.26 E-value=2.4 Score=38.26 Aligned_cols=74 Identities=20% Similarity=0.293 Sum_probs=40.3
Q ss_pred HHHHHHHHHHHHHHHHHhhhhchHHHHHHHHHHHhhhhhhHHHHhhhhhHHHHHHhhHHHHHHHHHHHHhhhhh
Q 006114 177 MYEKKITELIKQLEIEHARSEGAEEQVDTMKKLISDNQKSIEQYEMENSTYQKALADTTQLYEKKIAELNKKLE 250 (660)
Q Consensus 177 ~~~~~~~~l~~~l~~e~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~ 250 (660)
.|..++.++......-...-..+..++..|+..+..++-.+.....-|.++..+|+||-+-|+..+..+..++.
T Consensus 12 ~y~~K~eel~~~~~~~~~~l~~~k~Ei~elrr~iq~L~~el~~l~~~~~~LE~~l~e~e~~~~~~l~~~q~~i~ 85 (129)
T 3tnu_B 12 WYQTKYEELQQTAGRHGDDLRNTKHEISEMNRMIQRLRAEIDNVKKQCANLQNAIADAEQRGELALKDARNKLA 85 (129)
T ss_dssp ----------------------CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45566666666655555555566777777777777777777777788888999999999999887766655543
No 141
>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=90.24 E-value=2.2 Score=47.82 Aligned_cols=41 Identities=17% Similarity=0.216 Sum_probs=30.4
Q ss_pred hHHHHHHHHHHHHHHHHHHhhhhchHHHHHHHHHHHhhhhh
Q 006114 175 TQMYEKKITELIKQLEIEHARSEGAEEQVDTMKKLISDNQK 215 (660)
Q Consensus 175 ~~~~~~~~~~l~~~l~~e~~~~~~~~~~~~~l~~~l~~~~~ 215 (660)
.+.+++++.++.+.++..+.+...+.+++..++..++++++
T Consensus 539 ~~~~~~~~~~le~~~~~~~~~~~~l~~e~~~~~~~~~~l~~ 579 (597)
T 3oja_B 539 TEDLEQENIALEKQLDNKRAKQAELRQETSLKRQKVKQLEA 579 (597)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhhHHhhhHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHH
Confidence 45556777777777777777777777888888777777773
No 142
>3swk_A Vimentin; cytoskeleton, intermediate filament, alpha-helix, structural; 1.70A {Homo sapiens}
Probab=90.03 E-value=1.2 Score=37.49 Aligned_cols=35 Identities=23% Similarity=0.222 Sum_probs=20.6
Q ss_pred HHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHhh
Q 006114 284 HELCVKLKETRQLHESAVYEVQTLKSEYKNLLEEK 318 (660)
Q Consensus 284 ~~Lk~~Le~e~~~~e~~e~E~~~lks~l~~l~~~~ 318 (660)
..++..|+++...+.++|.++..|+..+-+..-.+
T Consensus 31 edfk~KyE~E~~~R~~~E~d~~~LrkdvD~a~l~r 65 (86)
T 3swk_A 31 MRLREKLQEEMLQREEAENTLQSFRQDVDNASLAR 65 (86)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHTTHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHH
Confidence 34455566666666666666666666665544433
No 143
>3oc3_A Helicase MOT1, MOT1; regulation of transcription, hydrolase-transc complex; HET: MES; 3.10A {Encephalitozoon cuniculi}
Probab=90.00 E-value=0.44 Score=53.42 Aligned_cols=218 Identities=14% Similarity=0.050 Sum_probs=123.5
Q ss_pred HHHHHhCCC------HHHHHHhhCCCCHHHHHHHHHHHHHhhC-CchhHHHHHHcCCHHHHHHHHc-----cC-------
Q 006114 400 IAKICDEVG------LPKILQLLTSEDPDVQIHAVKVVANLAA-EDINQEKIVEEGGLDALLLLLR-----TS------- 460 (660)
Q Consensus 400 ~~~I~e~gg------I~~LV~LL~s~d~~vr~~Aa~aL~nLa~-~~en~~~Ive~GgI~~Lv~LL~-----~s------- 460 (660)
..++.+.|+ ...|+.-|-++..++|--|+.+|..+.. +..........+. ...+++|. ..
T Consensus 161 ~~kied~~~eWPfqfcE~L~~DLFdp~WEiRHGAALGLREILR~hG~GAGR~~~~N~-DLAvRLLCVLALDRFGDYVSDq 239 (800)
T 3oc3_A 161 RHKVDERPIENVLDFFEQISDNLLSYEWYKRHGAFLAFAAMFSEIDNGGDIQIRVDS-KLFSKIYEILVTDKFNDFVDDR 239 (800)
T ss_dssp -------CCCSGGGTTHHHHHHTTCSSHHHHHHHHHHHHHHHHHCC----CCCCCCT-THHHHHHHHHHHBCCBBCSSSS
T ss_pred hhhhhhcCCCCHHHHHHHHHHHhcCcchhhhhHHHHHHHHHHHHhccCCceeccccH-HHHHHHHHHHHhccccccccCe
Confidence 344555543 4445555568999999999999988765 3211111111111 22333321 11
Q ss_pred CCHHHHHHHHHHHHHhhcC-chhHHHHHhcCccHHHHHhhcCCCCHHHHHHHHHHHHHHhcChhHHHHHHhccHHHHHHH
Q 006114 461 QNTTILRVASGAIANLAMN-EMNQGLIMSRGGGQLLAKTASKTDDPQTLRMVAGALANLCGNEKLHTMLEEDGAIKALLA 539 (660)
Q Consensus 461 ~d~~v~~~Aa~AL~nLA~~-~~n~~~Ive~g~I~~Ll~LL~~s~d~~v~~~Aa~aLanLa~~~~~r~~iv~~G~V~~Lv~ 539 (660)
.-..||+.||.+|+.+ .+ |+. ..++..|+..+.. +.=+++-.+.-+|..+. +.-.. =.+++++++.
T Consensus 240 VVAPVRETaAQtLGaL-~hLp~e------~~IL~qLV~~l~~-~~WEVRHGGLLGLKYL~---DLL~~--Ld~Vv~aVL~ 306 (800)
T 3oc3_A 240 TVAPVRDAAAYLLSRI-YPLIGP------NDIIEQLVGFLDS-GDWQVQFSGLIALGYLK---EFVED--KDGLCRKLVS 306 (800)
T ss_dssp CBCHHHHHHHHHHHHH-TTTSCS------CCHHHHHTTGGGC-SCHHHHHHHHHHHHHTG---GGCCC--HHHHHHHHHH
T ss_pred eeeehHHHHHHHHHHH-HhCChh------HHHHHHHHhhcCC-CCeeehhhhHHHHHHHH---HHHHH--HHHHHHHHHh
Confidence 1236899999999998 66 432 3444555544432 34456666666777771 11111 2477888888
Q ss_pred HhcCCCHHHHHHHHHHHHHhhccchhhhhhcchhhhHHHhhcChHHHHHHhhcCCC--HHHHHHHHHHHHHhhcCCccHH
Q 006114 540 MVRSGNIDVIAQVARGLANFAKCESRAIVQGQRKGRSHLMEDSALEWLIANSKTNS--ASTRRHVELALCHLAQNEDNAR 617 (660)
Q Consensus 540 lL~s~~~~v~~~Al~aLanLA~~~~~~~aq~~~e~r~~Li~~G~v~~Lv~lL~s~d--~~vr~~Aa~AL~nLa~~~e~~~ 617 (660)
.|.+.+.+|+..|+.+|.-++. +.. -..++..++..|.+-| ..........|+.||.++...
T Consensus 307 GL~D~DDDVRAVAAetLiPIA~--p~~-------------l~~LL~iLWd~L~~LDDLSASTgSVMdLLAkL~s~p~~a- 370 (800)
T 3oc3_A 307 LLSSPDEDIKLLSAELLCHFPI--TDS-------------LDLVLEKCWKNIESEELISVSKTSNLSLLTKIYRENPEL- 370 (800)
T ss_dssp HTTCSSHHHHHHHHHHHTTSCC--SST-------------HHHHHHHHHHHHHTCCSCCTTHHHHHHHHHHHHHHCTTC-
T ss_pred hcCCcccHHHHHHHHHhhhhcc--hhh-------------HHHHHHHHHHHhhhhcccchhhHHHHHHHHHHHcCCccc-
Confidence 8999999999999999988872 211 1234556666655432 223344566677777655321
Q ss_pred HHHhcCcHHHHHHHHhcCChHHHHHHHHHHHh
Q 006114 618 DFISRGGAKELVQISIESSREDIRNLAKKTMK 649 (660)
Q Consensus 618 ~Ive~G~l~~Lv~lL~s~s~~~ir~~A~~~L~ 649 (660)
......+|.|..+++.. ...+|..+.++|.
T Consensus 371 -~~dp~LVPRL~PFLRHt-ITSVR~AVL~TL~ 400 (800)
T 3oc3_A 371 -SIPPERLKDIFPCFTSP-VPEVRTSILNMVK 400 (800)
T ss_dssp -CCCSGGGGGTGGGGTCS-SHHHHHHHHHHTT
T ss_pred -ccChHHHHHHHhhhcCC-cHHHHHHHHHHHH
Confidence 11237888888888864 4456666666664
No 144
>3m1i_C Exportin-1; heat repeat, GTP-binding, nucleotide-binding, NUCL protein transport, transport, cytoplasm, GTPase activation; HET: GTP; 2.00A {Saccharomyces cerevisiae} PDB: 2l1l_B
Probab=89.62 E-value=6.6 Score=47.08 Aligned_cols=197 Identities=9% Similarity=0.003 Sum_probs=113.3
Q ss_pred CCCCHHHHHHHHHHHHHhhCCchhHHHHHHcCCHHHHHHHHccCCCHHHHHHHHHHHHHhhcC-----chhHHHHHhcCc
Q 006114 417 TSEDPDVQIHAVKVVANLAAEDINQEKIVEEGGLDALLLLLRTSQNTTILRVASGAIANLAMN-----EMNQGLIMSRGG 491 (660)
Q Consensus 417 ~s~d~~vr~~Aa~aL~nLa~~~en~~~Ive~GgI~~Lv~LL~~s~d~~v~~~Aa~AL~nLA~~-----~~n~~~Ive~g~ 491 (660)
.+++...|..|-..|..+..+| ++...+..+|..+.++.++..|+..|.+.... ++.....+....
T Consensus 26 ~~p~~~~r~~Ae~~L~~~~~~p---------~~~~~l~~iL~~s~~~~vr~~aa~~Lk~~i~~~W~~l~~~~~~~ir~~l 96 (1049)
T 3m1i_C 26 YQGSGVQQKQAQEILTKFQDNP---------DAWQKADQILQFSTNPQSKFIALSILDKLITRKWKLLPNDHRIGIRNFV 96 (1049)
T ss_dssp HHCCHHHHHHHHHHHHHHHHST---------TGGGGHHHHHHHCSCHHHHHHHHHHHHHHHHHTGGGSCHHHHHHHHHHH
T ss_pred hCCChHHHHHHHHHHHHHHhCc---------hHHHHHHHHHhhCCCHHHHHHHHHHHHHHHHhhCccCCHHHHHHHHHHH
Confidence 3566777888888886654444 45666777777678999999999999987642 333333333334
Q ss_pred cHHHHHhhcCCC----CHHHHHHHHHHHHHHhc--ChhHHHHHHhccHHHHHHHHhcCCCHHHHHHHHHHHHHhhccch-
Q 006114 492 GQLLAKTASKTD----DPQTLRMVAGALANLCG--NEKLHTMLEEDGAIKALLAMVRSGNIDVIAQVARGLANFAKCES- 564 (660)
Q Consensus 492 I~~Ll~LL~~s~----d~~v~~~Aa~aLanLa~--~~~~r~~iv~~G~V~~Lv~lL~s~~~~v~~~Al~aLanLA~~~~- 564 (660)
+..+...-.+++ ++.++...+.+|+.++. .|. .-.+.++.|+..+. +++..+..++.+|..++..-.
T Consensus 97 l~~l~~~~~~~~~~~~~~~i~~kl~~~ia~Ia~~~~p~-----~Wp~ll~~L~~~~~-~~~~~~~~~l~~L~~l~eev~~ 170 (1049)
T 3m1i_C 97 VGMIISMCQDDEVFKTQKNLINKSDLTLVQILKQEWPQ-----NWPEFIPELIGSSS-SSVNVCENNMIVLKLLSEEVFD 170 (1049)
T ss_dssp HHHHHHHHHCHHHHHHCHHHHHHHHHHHHHHHHHHTTT-----TCTTHHHHHHHHHT-TCHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHhhCCccccchhhHHHHHHHHHHHHHHHHHhCcc-----cchHHHHHHHHHHc-cChHHHHHHHHHHHHHHHHHHH
Confidence 454444322111 35677777788888772 231 12367888888886 566667777888877763211
Q ss_pred ---hhhhhc-chhhhHHHhh--cChHHHHHHhhcC-CCHHHHHHHHHHHHHhhcCCccHHHHHhcCcHHHHH
Q 006114 565 ---RAIVQG-QRKGRSHLME--DSALEWLIANSKT-NSASTRRHVELALCHLAQNEDNARDFISRGGAKELV 629 (660)
Q Consensus 565 ---~~~aq~-~~e~r~~Li~--~G~v~~Lv~lL~s-~d~~vr~~Aa~AL~nLa~~~e~~~~Ive~G~l~~Lv 629 (660)
...... ....+..+.. ..+++.+...+.+ .++.++..+..++.++..+-.. ..+.....++.++
T Consensus 171 ~~~~~~~~~r~~~lk~~l~~~~~~i~~~~~~~l~~~~~~~~~~~aL~~l~~~l~wi~~-~~~~~~~ll~~l~ 241 (1049)
T 3m1i_C 171 FSAEQMTQAKALHLKNSMSKEFEQIFKLCFQVLEQGSSSSLIVATLESLLRYLHWIPY-RYIYETNILELLS 241 (1049)
T ss_dssp SCTTTSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHTTTSCT-HHHHSSSHHHHHH
T ss_pred hcchhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHhhCCH-HHHhhhhHHHHHH
Confidence 000000 0011122222 1223333444433 4578899999999887665542 2234445555554
No 145
>3vkg_A Dynein heavy chain, cytoplasmic; AAA+ protein, molecular motor, microtubles, motor protein; HET: ADP SPM; 2.81A {Dictyostelium discoideum} PDB: 3vkh_A*
Probab=89.61 E-value=46 Score=44.92 Aligned_cols=31 Identities=10% Similarity=0.023 Sum_probs=18.1
Q ss_pred HHHHHHHHHHHHHHHHHhHHHHHHHHHHHHH
Q 006114 282 EVHELCVKLKETRQLHESAVYEVQTLKSEYK 312 (660)
Q Consensus 282 e~~~Lk~~Le~e~~~~e~~e~E~~~lks~l~ 312 (660)
.+..|+..++....+++.++.++...+..+.
T Consensus 2043 ~l~~L~~~~~~~~~ek~~L~~e~~~~~~kl~ 2073 (3245)
T 3vkg_A 2043 SIATYKEEYATLIRETEQIKTESSKVKNKVD 2073 (3245)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4455666666666666666666655555444
No 146
>2of3_A ZYG-9; multifunctional macromolecule, kinetochore, microtubule, XMAP215, STU2, DIS1, microtubule associated protein, structural protein; 1.90A {Caenorhabditis elegans}
Probab=89.32 E-value=1.4 Score=44.95 Aligned_cols=130 Identities=10% Similarity=0.082 Sum_probs=88.6
Q ss_pred CCCHHHHHHHHHHHHHhhC---Cc--hhHHHHHHcCCHHHHHHHHccCCCHHHHHHHHHHHHHhhcCchhHHHHHhcCcc
Q 006114 418 SEDPDVQIHAVKVVANLAA---ED--INQEKIVEEGGLDALLLLLRTSQNTTILRVASGAIANLAMNEMNQGLIMSRGGG 492 (660)
Q Consensus 418 s~d~~vr~~Aa~aL~nLa~---~~--en~~~Ive~GgI~~Lv~LL~~s~d~~v~~~Aa~AL~nLA~~~~n~~~Ive~g~I 492 (660)
+.+..+...++.+|..+.. .. .....-+ .-.+|.|+.-+. ++...+|..+-.++..|+.. .--..++
T Consensus 98 d~N~~v~~~~L~~L~~l~~~l~~~~y~~~~~ea-~~~lP~LveKlG-d~k~~vR~~~r~il~~l~~v------~~~~~v~ 169 (266)
T 2of3_A 98 ETNPAALIKVLELCKVIVELIRDTETPMSQEEV-SAFVPYLLLKTG-EAKDNMRTSVRDIVNVLSDV------VGPLKMT 169 (266)
T ss_dssp SCCHHHHHHHHHHHHHHHHHHHHTTCCCCHHHH-HHHHHHHHHGGG-CSSHHHHHHHHHHHHHHHHH------HCHHHHH
T ss_pred CCCHHHHHHHHHHHHHHHHHHHhccccchHHHH-HHHHHHHHHHhC-CChHHHHHHHHHHHHHHHHH------CCHHHHH
Confidence 6688888888888877643 11 1111111 114899999997 66677888888877776432 1112356
Q ss_pred HHHHHhhcCCCCHHHHHHHHHHHHHHhcChhHHHHHHhccHH---HHHHHHhcCCCHHHHHHHHHHHHHhh
Q 006114 493 QLLAKTASKTDDPQTLRMVAGALANLCGNEKLHTMLEEDGAI---KALLAMVRSGNIDVIAQVARGLANFA 560 (660)
Q Consensus 493 ~~Ll~LL~~s~d~~v~~~Aa~aLanLa~~~~~r~~iv~~G~V---~~Lv~lL~s~~~~v~~~Al~aLanLA 560 (660)
+.++..+. +.+..++..++..|..+....... ..+++ |.+..++.++|+.|+..|+.++..+-
T Consensus 170 ~~l~~g~k-sKN~R~R~e~l~~l~~li~~~G~~----~~~~l~~~~~ia~ll~D~d~~VR~aAl~~lve~y 235 (266)
T 2of3_A 170 PMLLDALK-SKNARQRSECLLVIEYYITNAGIS----PLKSLSVEKTVAPFVGDKDVNVRNAAINVLVACF 235 (266)
T ss_dssp HHHHHGGG-CSCHHHHHHHHHHHHHHHHHHCSG----GGGGGCHHHHHGGGGGCSSHHHHHHHHHHHHHHH
T ss_pred HHHHHHHc-cCCHHHHHHHHHHHHHHHHhcCCC----ccccccchHHHHHHHcCCCHHHHHHHHHHHHHHH
Confidence 77777775 478899998888888775211111 24578 99999999999999999999997654
No 147
>2ocy_A RAB guanine nucleotide exchange factor SEC2; RAB, GEF, guanine exchange factor, coiled-coil, endocytosis/exocytosis complex; 3.30A {Saccharomyces cerevisiae} SCOP: h.1.33.1
Probab=89.16 E-value=12 Score=34.81 Aligned_cols=110 Identities=18% Similarity=0.212 Sum_probs=63.0
Q ss_pred chHHHHHHHHHHHhhhhhhHHHHhhhhhHHHHHHhhHHHHHHHHHHHHhhhhhhhhhhhhhhHHhHHHHHHHhhhhhccc
Q 006114 198 GAEEQVDTMKKLISDNQKSIEQYEMENSTYQKALADTTQLYEKKIAELNKKLEDEHACFEGAVEQLDMVKKLLSDYQNSN 277 (660)
Q Consensus 198 ~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 277 (660)
.++|.+..+.+.|.-.+-.+++++.....|..... --..++.++..|...+..|.++-..||.....+.+=|-|-.-+-
T Consensus 17 ~LeD~L~~~R~el~~~~~ri~~lE~~r~~~~~l~~-~~~~~~~e~~~L~~~l~~E~~~R~~aE~~~~~ie~ElEeLTasL 95 (154)
T 2ocy_A 17 HLEEQLNKSLKTIASQKAAIENYNQLKEDYNTLKR-ELSDRDDEVKRLREDIAKENELRTKAEEEADKLNKEVEDLTASL 95 (154)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHTTHHHHHHHHHHHT-HHHHHHHHHHHHHHHHHHHHHHHHHHHTHHHHHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33444444444444333333333333333333221 12346777888888999999998888888877766554433211
Q ss_pred cchhHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHH
Q 006114 278 QGQKEVHELCVKLKETRQLHESAVYEVQTLKSEYKN 313 (660)
Q Consensus 278 ~~~~e~~~Lk~~Le~e~~~~e~~e~E~~~lks~l~~ 313 (660)
..+--+|+.+++..+..++.-+..|+.++.+
T Consensus 96 -----FeEAN~MVa~ar~~~~~~e~r~~~L~~ql~e 126 (154)
T 2ocy_A 96 -----FDEANNMVADARKEKYAIEILNKRLTEQLRE 126 (154)
T ss_dssp -----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred -----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 1333456666777777777777777666664
No 148
>2eqb_B RAB guanine nucleotide exchange factor SEC2; coiled coil, endocytosis/exocytosis complex; 2.70A {Saccharomyces cerevisiae} SCOP: h.1.33.1
Probab=88.82 E-value=5.1 Score=34.43 Aligned_cols=86 Identities=24% Similarity=0.305 Sum_probs=63.8
Q ss_pred hhhhHHhHHHHHHHhhhhhccccchhHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHhhhhccHHHHHHHHHHHHH
Q 006114 256 FEGAVEQLDMVKKLLSDYQNSNQGQKEVHELCVKLKETRQLHESAVYEVQTLKSEYKNLLEEKETMSDELQAARQRLLVE 335 (660)
Q Consensus 256 ~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~Lk~~Le~e~~~~e~~e~E~~~lks~l~~l~~~~~~~~eel~~~~k~l~~e 335 (660)
++.+.++++.+..-+++ -..++..|...|.++...+..+|.+...+..++-+|+. ++++|... |..+.
T Consensus 7 ~e~lre~l~~le~~~~~------~~~e~~~L~~~l~eE~~~R~~aE~~~~~ie~ElEeLTa---sLFeEAN~---MVa~a 74 (97)
T 2eqb_B 7 YNQLKEDYNTLKRELSD------RDDEVKRLREDIAKENELRTKAEEEADKLNKEVEDLTA---SLFDEANN---MVADA 74 (97)
T ss_dssp HHHHHHHHHHHHHHHHH------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHH---HHHHH
T ss_pred HHHHHHHHHHHHHHHHh------hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHH---HHHHH
Confidence 45566777777766666 46678999999999999999999999999999998875 56677655 44444
Q ss_pred HHHhhhhHHHHHHHHhhC
Q 006114 336 EKQRKAIEYELVKLKKTA 353 (660)
Q Consensus 336 ~~~rkkLe~E~~~l~~~l 353 (660)
-..+..++.....+..++
T Consensus 75 r~e~~~~e~kn~~L~~qL 92 (97)
T 2eqb_B 75 RKEKYAIEILNKRLTEQL 92 (97)
T ss_dssp HHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 444566666666666554
No 149
>3m48_A General control protein GCN4; leucine zipper, synthetic peptide, alpha helix, activa amino-acid biosynthesis, DNA-binding, nucleus; 1.45A {Synthetic} PDB: 3i1g_A 2ahp_A* 2o7h_A
Probab=88.53 E-value=0.37 Score=33.00 Aligned_cols=31 Identities=29% Similarity=0.282 Sum_probs=26.6
Q ss_pred HHhhhhhhhHHHHhhhhHHHHHHHHHhhhhh
Q 006114 105 MRNLVTRSEFLEKENAHLELEVEKILGELNH 135 (660)
Q Consensus 105 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 135 (660)
|..|+.|.|.|-.+|+.|+.||.||+.-+..
T Consensus 2 M~QLE~kVEeLl~~n~~Le~EV~RLk~Ll~~ 32 (33)
T 3m48_A 2 MAQLEAKVEELLSKNWNLENEVARLKKLVGE 32 (33)
T ss_dssp -CHHHHHHHHHHHHHHHHHHHHHHHHHHTTC
T ss_pred ccHHHHHHHHHHHHhHHHHHHHHHHHHHhhc
Confidence 4568899999999999999999999887653
No 150
>2x1g_F Cadmus; transport protein, developmental protein, mRNA processing, nuclear transport, mRNA splicing, mRNA transport; 3.35A {Drosophila melanogaster}
Probab=87.91 E-value=3.5 Score=48.80 Aligned_cols=132 Identities=13% Similarity=0.077 Sum_probs=83.8
Q ss_pred CCHHHHHHHHHHHHHhhCCchhHHHHHHcCCHHHHHHHH---c-cCCCHHHHHHHHHHHHHhhcC-chhHHHHHhcCccH
Q 006114 419 EDPDVQIHAVKVVANLAAEDINQEKIVEEGGLDALLLLL---R-TSQNTTILRVASGAIANLAMN-EMNQGLIMSRGGGQ 493 (660)
Q Consensus 419 ~d~~vr~~Aa~aL~nLa~~~en~~~Ive~GgI~~Lv~LL---~-~s~d~~v~~~Aa~AL~nLA~~-~~n~~~Ive~g~I~ 493 (660)
.+...+..|+.+++.++....... ...++.++.++ . .++++.|+..++++|+.++.. ..+... -..+++
T Consensus 476 ~~w~~~eaal~~l~~iae~~~~~~----~~~l~~l~~~l~~l~~~d~~~~vr~~a~~~l~~~~~~l~~~~~~--l~~vl~ 549 (971)
T 2x1g_F 476 THWTKLEACIYSFQSVAEHFGGEE----KRQIPRLMRVLAEIPYEKLNVKLLGTALETMGSYCNWLMENPAY--IPPAIN 549 (971)
T ss_dssp TCCHHHHHHHHHHHHTTTC----------CHHHHHHHHHHHSCTTTSCHHHHHHHHHHHHHTHHHHC----C--HHHHHH
T ss_pred CcHHHHHHHHHHHHHHHhhcChhh----hHHHHHHHHHHHhcCccccCHHHHHHHHHHHHHHHHHHhcCHHH--HHHHHH
Confidence 566788999999999987422111 12345555444 2 134889999999999998754 211111 123456
Q ss_pred HHHHhhcCCCCHHHHHHHHHHHHHHhcChhHHHHHHh--ccHHHHHHHHhcC--CCHHHHHHHHHHHHHhhcc
Q 006114 494 LLAKTASKTDDPQTLRMVAGALANLCGNEKLHTMLEE--DGAIKALLAMVRS--GNIDVIAQVARGLANFAKC 562 (660)
Q Consensus 494 ~Ll~LL~~s~d~~v~~~Aa~aLanLa~~~~~r~~iv~--~G~V~~Lv~lL~s--~~~~v~~~Al~aLanLA~~ 562 (660)
.|+..+ + +.|+..|+++|.++|.. .+..+.. .+.+..+..++.. .+...+..++.+++.++..
T Consensus 550 ~l~~~l-~---~~v~~~A~~al~~l~~~--~~~~l~p~~~~ll~~l~~~l~~~~~~~~~~~~~~~ai~~i~~~ 616 (971)
T 2x1g_F 550 LLVRGL-N---SSMSAQATLGLKELCRD--CQLQLKPYADPLLNACHASLNTGRMKNSDSVRLMFSIGKLMSL 616 (971)
T ss_dssp HHHHHH-H---SSCHHHHHHHHHHHHHH--CHHHHHHHHHHHHHHHHHHHHSTTSCHHHHHHHHHHHHHHHHT
T ss_pred HHHHHh-C---hHHHHHHHHHHHHHHHH--HHHhccccHHHHHHHHHHHHcCCCCChHHHHHHHHHHHHHHHh
Confidence 666666 3 57899999999999932 2233332 2455566667766 4678889999999988753
No 151
>3tnu_A Keratin, type I cytoskeletal 14; coiled-coil, structural support, cytosolic protein; 3.00A {Homo sapiens}
Probab=87.76 E-value=3.4 Score=37.42 Aligned_cols=74 Identities=9% Similarity=0.252 Sum_probs=34.8
Q ss_pred HHHHHHHHHHHHHHHHHhhhhchHHHHHHHHHHHhhhhhhHHHHhhhhhHHHHHHhhHHHHHHHHHHHHhhhhh
Q 006114 177 MYEKKITELIKQLEIEHARSEGAEEQVDTMKKLISDNQKSIEQYEMENSTYQKALADTTQLYEKKIAELNKKLE 250 (660)
Q Consensus 177 ~~~~~~~~l~~~l~~e~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~ 250 (660)
.|..++.++......-...-..+..++..|+..+..++-.+.....-|.++..+|+||-+-|+..+..+...+.
T Consensus 14 ~y~~K~eel~~~~~~~~~~l~~~k~Ei~elrr~iq~L~~el~~l~~~~~sLE~~l~e~e~~~~~~l~~~q~~i~ 87 (131)
T 3tnu_A 14 WFFTKTEELNREVATNSELVQSGKSEISELRRTMQNLEIELQSQLSMKASLENSLEETKGRYCMQLAQIQEMIG 87 (131)
T ss_dssp ---------------------------CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45556666666555554445556667777777777777666666677888888899888888887766655543
No 152
>1uo4_A General control protein GCN4; four helix bundle, cavity, iodobenzene; 1.70A {Saccharomyces cerevisiae} SCOP: h.1.3.1 PDB: 1uo3_A 1unt_A 1uo5_A 1unu_A 1unv_A 1uo1_A 2ccf_A 2cce_A 1unx_A 1unw_A 1w5j_A* 1w5k_A* 1u9f_A* 3f86_A* 3f87_A* 3hez_A* 3c3f_A*
Probab=86.69 E-value=0.58 Score=32.17 Aligned_cols=31 Identities=23% Similarity=0.300 Sum_probs=27.4
Q ss_pred HHhhhhhhhHHHHhhhhHHHHHHHHHhhhhh
Q 006114 105 MRNLVTRSEFLEKENAHLELEVEKILGELNH 135 (660)
Q Consensus 105 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 135 (660)
|..|+.|-|.|-.+|..|+.||.||++-|..
T Consensus 3 M~QLEdKVEeLl~~n~~Le~EV~RLk~LL~~ 33 (34)
T 1uo4_A 3 MKQIEDKGEEILSKLYHIENELARIKKLLGE 33 (34)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHHHTTC
T ss_pred hhHHHHHHHHHHHhhHHHHHHHHHHHHHHcc
Confidence 5678899999999999999999999987754
No 153
>2v71_A Nuclear distribution protein NUDE-like 1; developmental protein, nuclear protein, neurogenesis, cytosk LIS1 binding, differentiation; 2.24A {Rattus norvegicus}
Probab=86.58 E-value=24 Score=33.99 Aligned_cols=23 Identities=26% Similarity=0.393 Sum_probs=11.1
Q ss_pred hhcch-HHHHHHHHHHHHHhhHHH
Q 006114 11 EEFDY-ESLCRKLETQVDHLTAEI 33 (660)
Q Consensus 11 ~~~~~-~~~~~~~~~~~~~~~~~~ 33 (660)
+|+.| ++++.++-.+++.+-.|.
T Consensus 10 ee~~ywk~~~~~~~q~~~~le~El 33 (189)
T 2v71_A 10 EETAYWKELSMKYKQSFQEARDEL 33 (189)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34443 555555555555554443
No 154
>1deq_A Fibrinogen (alpha chain); coiled-coil, blood clotting; 3.50A {Bos taurus} SCOP: i.9.1.1
Probab=86.57 E-value=6.9 Score=41.41 Aligned_cols=112 Identities=9% Similarity=0.112 Sum_probs=74.8
Q ss_pred HHHHHHhhHHHHHHHHHHHHhhhhhhhhhhhhhhHHhHHHHHHHhhhhhccccchhHH-HHHHHHHHHHHHHHH----hH
Q 006114 226 TYQKALADTTQLYEKKIAELNKKLEDEHACFEGAVEQLDMVKKLLSDYQNSNQGQKEV-HELCVKLKETRQLHE----SA 300 (660)
Q Consensus 226 ~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~-~~Lk~~Le~e~~~~e----~~ 300 (660)
..+..|.++.+-|.+.|.+|...|.+-..-+...-.-...+++++-+.|+...+.+-+ .++-..|++-..-.+ ..
T Consensus 53 rLqg~Ldk~er~~~~rIe~L~~~L~~~s~s~~~~~~y~~~~~~~lk~~~~q~~dndn~~~e~s~eLe~~i~~lk~~V~~q 132 (390)
T 1deq_A 53 RMKGLIDEVDQDFTSRINKLRDSLFNYQKNSKDSNTLTKNIVELMRGDFAKANNNDNTFKQINEDLRSRIEILRRKVIEQ 132 (390)
T ss_pred hHHHHHHHhhhhHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4567777888888899999999998888888888888888888888888888888766 555555544333222 22
Q ss_pred HHHHHHHHHHHHHHHHhhhhccHHHHHHHHHHHHHHHHhhhhHHHHHHHHhhCCCCCC
Q 006114 301 VYEVQTLKSEYKNLLEEKETMSDELQAARQRLLVEEKQRKAIEYELVKLKKTAPEHDD 358 (660)
Q Consensus 301 e~E~~~lks~l~~l~~~~~~~~eel~~~~k~l~~e~~~rkkLe~E~~~l~~~l~~~~~ 358 (660)
...|+.| +..+++-..+-++|+..++.....|.-.|.
T Consensus 133 ~~~ir~L---------------------q~~l~~q~~kiqRLE~~Id~c~~~C~~sC~ 169 (390)
T 1deq_A 133 VQRINLL---------------------QKNVRDQLVDMKRLEVDIDIKIRSCKGSCS 169 (390)
T ss_pred hHHHHHH---------------------HHHHHHHHHHHHHHHHHHHHHhcccccccc
Confidence 2233333 344444444446777777777666655444
No 155
>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=86.30 E-value=6.1 Score=44.08 Aligned_cols=48 Identities=17% Similarity=0.064 Sum_probs=25.9
Q ss_pred hHHHHHHhhHHHHHHHHHHHHHHHHHHhhhhchHHHHHHHHHHHhhhh
Q 006114 167 YQKVLADTTQMYEKKITELIKQLEIEHARSEGAEEQVDTMKKLISDNQ 214 (660)
Q Consensus 167 ~~~~~~~~~~~~~~~~~~l~~~l~~e~~~~~~~~~~~~~l~~~l~~~~ 214 (660)
+.+.++...+..++.+.+.+++++.-......++.+....+.++.+.+
T Consensus 517 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~le~~~~~~~~~~~~l~ 564 (597)
T 3oja_B 517 RQAFKLRETQARRTEADAKQKETEDLEQENIALEKQLDNKRAKQAELR 564 (597)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhhhhHHHHHHHHHhhhhhhcchhhHHhhhHHHHHHHhhhhhHHHHHH
Confidence 344555556666666666666655544444555555555555554444
No 156
>3ghg_A Fibrinogen alpha chain; triple-stranded coiled coil, beta sheets, alpha helices, AMY amyloidosis, blood coagulation, disease mutation, glycoprot phosphoprotein; HET: NAG NDG BMA MAN GAL SIA; 2.90A {Homo sapiens} PDB: 3h32_A* 2a45_G*
Probab=86.01 E-value=5.9 Score=43.53 Aligned_cols=117 Identities=10% Similarity=0.109 Sum_probs=60.4
Q ss_pred HHHHHhhHHHHHHHHHHHHhhhhhhhhhhhhhhHHhHHHHHHHhhhhhccccchhHH-HHHHHHHHHHHHHHHhHHHHHH
Q 006114 227 YQKALADTTQLYEKKIAELNKKLEDEHACFEGAVEQLDMVKKLLSDYQNSNQGQKEV-HELCVKLKETRQLHESAVYEVQ 305 (660)
Q Consensus 227 ~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~-~~Lk~~Le~e~~~~e~~e~E~~ 305 (660)
.|-.|-.+-+-+-+.|.+|..+++|=...+..++.....+...|...|....+++.. .++-..|+ +++.-+..+|+
T Consensus 51 LQglLdkqErDltkrINELKnqLEdlsKnsKdseqy~k~~~E~Lr~rq~q~~dNdNtynE~S~ELR---RrIqyLKekVd 127 (562)
T 3ghg_A 51 MKGLIDEVNQDFTNRINKLKNSLFEYQKNNKDSHSLTTNIMEILRGDFSSANNRDNTYNRVSEDLR---SRIEVLKRKVI 127 (562)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHTHHHHHHHHHHHHHHHHHHTTSSHHHHHHHHHHHHHHTTHHHH---HHHHHHHHHHH
T ss_pred hhhhHHhhcCcHHHHHHHHHHHHHHHHhhchhHHHHHHHHHHHHHHHHHhhhccchhHHHHHHHHH---HHHHHHHHHHH
Confidence 344444455555556666666666655555555555555555555555444433321 22222222 12222222222
Q ss_pred HHHHHHHHHHHhhhhccHHHHHHHHHHHHHHHHhhhhHHHHHHHHhhCCCCCCcc
Q 006114 306 TLKSEYKNLLEEKETMSDELQAARQRLLVEEKQRKAIEYELVKLKKTAPEHDDDF 360 (660)
Q Consensus 306 ~lks~l~~l~~~~~~~~eel~~~~k~l~~e~~~rkkLe~E~~~l~~~l~~~~~~~ 360 (660)
+++.+ |..++..|.+-+.+-++||.+++.-+..|.-.|...
T Consensus 128 ---nQlsn-----------IrvLQsnLedq~~kIQRLEvDIdiqirsCKgsCsr~ 168 (562)
T 3ghg_A 128 ---EKVQH-----------IQLLQKNVRAQLVDMKRLEVDIDIKIRSCRGSCSRA 168 (562)
T ss_dssp ---HHHHH-----------HHHHHHHHHHHHHHHHHHHHHHHHHHHHGGGTBSCC
T ss_pred ---HHHHH-----------HHHHHHHHHHHHHHHHHHHHHHHHHHHhccccccch
Confidence 22211 123444555555555889999999999998888766
No 157
>3o2t_A Symplekin; heat repeat, scaffold, protein binding; 1.40A {Homo sapiens} PDB: 3odr_A 3ods_A 4h3k_A* 3o2s_A 3o2q_A* 4h3h_A*
Probab=85.85 E-value=36 Score=36.34 Aligned_cols=177 Identities=14% Similarity=0.096 Sum_probs=97.9
Q ss_pred CCHHHHHHhhCCCCHHHHHHHHHHHHHhhC-CchhHHHHHHcCCHHHHHHHHccCCCHHHHHHHHHHHHHhhcCchhHHH
Q 006114 407 VGLPKILQLLTSEDPDVQIHAVKVVANLAA-EDINQEKIVEEGGLDALLLLLRTSQNTTILRVASGAIANLAMNEMNQGL 485 (660)
Q Consensus 407 ggI~~LV~LL~s~d~~vr~~Aa~aL~nLa~-~~en~~~Ive~GgI~~Lv~LL~~s~d~~v~~~Aa~AL~nLA~~~~n~~~ 485 (660)
..++.++.+-..++.++|...+..|...+. ..+.. ...++.|..+|. +.|+.|...+..+.++|
T Consensus 63 ~fl~~il~f~~d~~~~vRk~~a~FieEa~~~~~el~-----~~~l~~L~~LL~-d~d~~V~K~~I~~~tsl--------- 127 (386)
T 3o2t_A 63 NFLDEIIAFQADKSIEVRKFVIGFIEEACKRDIELL-----LKLIANLNMLLR-DENVNVVKKAILTMTQL--------- 127 (386)
T ss_dssp GGHHHHHGGGGCSCHHHHHHHHHHHHHHHHHCGGGH-----HHHHHHHHHHHT-CSSHHHHHHHHHHHHHH---------
T ss_pred HHHHHHHHhccCCcHHHHHHHHHHHHHHHHHHHHHH-----HHHHHHHHHHHc-CCCHHHHHHHHHHHHHH---------
Confidence 578888888888899999999999987765 44332 123777888886 77888888888877775
Q ss_pred HHhcCccHHHHHhhcCCCCHHHHHHHHHHHHHHhcChhHHHHHHhccHHHHHHHHhcCCCHHHHHHHHHHHHHhhcc---
Q 006114 486 IMSRGGGQLLAKTASKTDDPQTLRMVAGALANLCGNEKLHTMLEEDGAIKALLAMVRSGNIDVIAQVARGLANFAKC--- 562 (660)
Q Consensus 486 Ive~g~I~~Ll~LL~~s~d~~v~~~Aa~aLanLa~~~~~r~~iv~~G~V~~Lv~lL~s~~~~v~~~Al~aLanLA~~--- 562 (660)
.|.++..+..+++.......+|...+ ..-..++.++.+.+..++..|+..+-.+.-.
T Consensus 128 ------Ypl~f~~i~~~~~~~~~~e~~W~~m~--------------~lK~~Il~~~ds~n~GVrl~aiKFle~VIl~qS~ 187 (386)
T 3o2t_A 128 ------YKVALQWMVKSRVISELQEACWDMVS--------------AMAGDIILLLDSDNDGIRTHAIKFVEGLIVTLSP 187 (386)
T ss_dssp ------HHHHHHHHHHC-CCCHHHHHHHHHHH--------------HHHHHHHHGGGCSSHHHHHHHHHHHHHHHHHTSC
T ss_pred ------HHHHHHHHhcCCCcchhHHHHHHHHH--------------HHHHHHHHHhccCCcchHHHHHHHHHHHHHHhCC
Confidence 22322222222221111111221111 1122444556667777777777666654311
Q ss_pred ---chh------------hhhhcchhhhH-HHh--hcChHHHHHHhhcCC--CHHHHHHHHHHHHHhhc-CCccHHH
Q 006114 563 ---ESR------------AIVQGQRKGRS-HLM--EDSALEWLIANSKTN--SASTRRHVELALCHLAQ-NEDNARD 618 (660)
Q Consensus 563 ---~~~------------~~aq~~~e~r~-~Li--~~G~v~~Lv~lL~s~--d~~vr~~Aa~AL~nLa~-~~e~~~~ 618 (660)
+++ .+..+|+.... .+- ..|.+..|+..+... ++..-..+..+|+.|+. .+.....
T Consensus 188 ~~~d~~~p~~~~~d~SL~~VP~nHp~L~~~~Le~EA~~lLd~LL~~l~~~~iss~~l~a~lnsLa~Iak~RP~~~~r 264 (386)
T 3o2t_A 188 RMADSEIPRRQEHDISLDRIPRDHPYIQYNVLWEEGKAALEQLLKFMVHPAISSINLTTALGSLANIARQRPMFMSE 264 (386)
T ss_dssp CCTTCCCCGGGTTSCCGGGSCTTCSSSCHHHHHHHHHHHHHHHHHHTTC--CCHHHHHHHHHHHHHHHHHSGGGHHH
T ss_pred CCCCcccccccCCCCCHhhCCCCCCcCCHHHHHHHHHHHHHHHHHHHcccccccHHHHHHHHHHHHHHHhcHHHHHH
Confidence 000 11112222211 111 156778888888763 45455567777777765 4444333
No 158
>3gs3_A Symplekin, LD45768P; helix-turn-helix heat repeat extended loop, transcription, protein binding; 2.40A {Drosophila melanogaster}
Probab=85.82 E-value=31 Score=34.67 Aligned_cols=63 Identities=16% Similarity=0.228 Sum_probs=39.4
Q ss_pred CHHHHHHhhCCCCHHHHHHHHHHHHHhhC-CchhHHHHHHcCCHHHHHHHHccCCCHHHHHHHHHHHHHh
Q 006114 408 GLPKILQLLTSEDPDVQIHAVKVVANLAA-EDINQEKIVEEGGLDALLLLLRTSQNTTILRVASGAIANL 476 (660)
Q Consensus 408 gI~~LV~LL~s~d~~vr~~Aa~aL~nLa~-~~en~~~Ive~GgI~~Lv~LL~~s~d~~v~~~Aa~AL~nL 476 (660)
.++.++.+....+.++|...+..|...+. .++... ..++.|..+|. +.|+.|.+.+..+.+++
T Consensus 54 ~l~~il~~~~~~~~~vrk~~~~Fi~e~~~~k~~l~~-----~~l~~L~~Ll~-d~d~~V~K~~I~~~~~i 117 (257)
T 3gs3_A 54 FLESVLSLAHDSNMEVRKQVVAFVEQVCKVKVELLP-----HVINVVSMLLR-DNSAQVIKRVIQACGSI 117 (257)
T ss_dssp HHHHHHGGGGCSCHHHHHHHHHHHHHHHHHCGGGHH-----HHHHHHHHHTT-CSCHHHHHHHHHHHHHH
T ss_pred HHHHHHHhccCChHHHHHHHHHHHHHHHHHHHHHHH-----HHHHHHHHHHc-CCCHHHHHHHHHHHHHH
Confidence 45556665556777788877777776654 332221 13666767776 56777777777666664
No 159
>3c3g_A Alpha/beta peptide with the GCN4-PLI SIDE chain S AN (alpha-alpha-beta) backbone; helix bundle, foldamer, unknown function protein; HET: HMR B3Q B3D B3E B3L BIL B3K BAL GOL; 1.80A {Synthetic} PDB: 3heu_A* 3het_A* 3hev_A* 3hew_A* 3hey_A* 3hex_A* 3c3h_A*
Probab=85.38 E-value=0.98 Score=30.83 Aligned_cols=30 Identities=17% Similarity=0.185 Sum_probs=26.9
Q ss_pred HHhhhhhhhHHHHhhhhHHHHHHHHHhhhh
Q 006114 105 MRNLVTRSEFLEKENAHLELEVEKILGELN 134 (660)
Q Consensus 105 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 134 (660)
|..|+.|.|.|-.+|..|+.||.||+.-+.
T Consensus 2 MnQLEdKvEeLl~~~~~Le~EV~RLk~lL~ 31 (33)
T 3c3g_A 2 MKXIEXKLXEIXSKXYHXENXLARIKXLLX 31 (33)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHC
T ss_pred ccHHHHHHHHHHHHhhHHHHHHHHHHHHHc
Confidence 567899999999999999999999988764
No 160
>1gk4_A Vimentin; intermediate filament, dimer, parallel coiled coil, heptad repeat, stutter; 2.3A {Homo sapiens} SCOP: h.1.20.1
Probab=84.95 E-value=6.8 Score=32.66 Aligned_cols=72 Identities=19% Similarity=0.221 Sum_probs=49.4
Q ss_pred hHHHHHHHHHHHhhHHHHHHhhhhhhhHHHHhhhhHHHHHHHHHhhhhhhhhhhhhHHHHHHHHHHHhhhhhhhhhhhhh
Q 006114 87 KYEFEKQLRESQISYDESMRNLVTRSEFLEKENAHLELEVEKILGELNHQKDQNNLKREKIVQLEISLKNSKQQQLDNSS 166 (660)
Q Consensus 87 ~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 166 (660)
+..||+.|++.+..|.-.+..+... ..+|+.++.+++.++.+|..
T Consensus 10 ~~sLE~~l~e~e~~~~~~~~~~q~~-------i~~lE~eL~~~r~e~~~q~~---------------------------- 54 (84)
T 1gk4_A 10 NESLERQMREMEENFAVEAANYQDT-------IGRLQDEIQNMKEEMARHLR---------------------------- 54 (84)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHH----------------------------
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHH----------------------------
Confidence 7789999999999998876666555 44455555555555544421
Q ss_pred hHHHHHHhhHHHHHHHHHHHHHHHHHH
Q 006114 167 YQKVLADTTQMYEKKITELIKQLEIEH 193 (660)
Q Consensus 167 ~~~~~~~~~~~~~~~~~~l~~~l~~e~ 193 (660)
-++.|-+.+..++.||+--++.||-|-
T Consensus 55 EYq~LlnvK~~Ld~EIatYRkLLEGEe 81 (84)
T 1gk4_A 55 EYQDLLNVKMALDIEIATYRKLLEGEE 81 (84)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHTC--
T ss_pred HHHHHHHHHHhhHHHHHHHHHHHcCCc
Confidence 245566777888899999999998654
No 161
>2eqb_B RAB guanine nucleotide exchange factor SEC2; coiled coil, endocytosis/exocytosis complex; 2.70A {Saccharomyces cerevisiae} SCOP: h.1.33.1
Probab=84.89 E-value=14 Score=31.66 Aligned_cols=70 Identities=20% Similarity=0.240 Sum_probs=49.8
Q ss_pred HHHHHHHHHHHHHHHHHHhhhhchHHHHHHHHHHHhhhhhhHHHHhhhhhHHHHHHhh---HHHHHHHHHHHHhhhhhh
Q 006114 176 QMYEKKITELIKQLEIEHARSEGAEEQVDTMKKLISDNQKSIEQYEMENSTYQKALAD---TTQLYEKKIAELNKKLED 251 (660)
Q Consensus 176 ~~~~~~~~~l~~~l~~e~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~l~~---~~~~~~~~~~~~~~~~~~ 251 (660)
...+.++..|...|..+..++..++.+...+.+-|-++--|.= ..+.++.++ .+..++++...|..||.|
T Consensus 22 ~~~~~e~~~L~~~l~eE~~~R~~aE~~~~~ie~ElEeLTasLF------eEAN~MVa~ar~e~~~~e~kn~~L~~qL~d 94 (97)
T 2eqb_B 22 SDRDDEVKRLREDIAKENELRTKAEEEADKLNKEVEDLTASLF------DEANNMVADARKEKYAIEILNKRLTEQLRE 94 (97)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH------HHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 3477889999999999999999999999999988888875432 222233332 344566666666666654
No 162
>1kd8_B GABH BLL, GCN4 acid base heterodimer base-D12LA16L; coiled coil heterodimer, de novo protein; 1.90A {Synthetic} SCOP: h.1.3.1 PDB: 1kd9_B 1kdd_B
Probab=84.54 E-value=1.3 Score=30.87 Aligned_cols=32 Identities=19% Similarity=0.212 Sum_probs=28.2
Q ss_pred HHhhhhhhhHHHHhhhhHHHHHHHHHhhhhhh
Q 006114 105 MRNLVTRSEFLEKENAHLELEVEKILGELNHQ 136 (660)
Q Consensus 105 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 136 (660)
|..|+.|.|.|-.+|..|+.||.||+.-+-.-
T Consensus 3 MnQLE~KVEeLl~~~~~Le~eV~RLk~ll~~~ 34 (36)
T 1kd8_B 3 VKQLKAKVEELKSKLWHLKNKVARLKKKNAEC 34 (36)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHhHHHHHHHHHHHHHhccc
Confidence 66889999999999999999999999877543
No 163
>3c3f_A Alpha/beta peptide with the GCN4-PLI SIDE chain S AN (alpha-alpha-alpha-beta) backbone...; helix bundle, foldamer, unknown function, de novo protein; HET: B3K B3D B3E BIL B3L BAL; 2.00A {Synthetic} SCOP: h.1.3.1
Probab=84.38 E-value=1.1 Score=30.64 Aligned_cols=30 Identities=23% Similarity=0.202 Sum_probs=27.1
Q ss_pred HHhhhhhhhHHHHhhhhHHHHHHHHHhhhh
Q 006114 105 MRNLVTRSEFLEKENAHLELEVEKILGELN 134 (660)
Q Consensus 105 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 134 (660)
|..|+.|.|.|-.+|..|+.||.||+.-+.
T Consensus 3 MnQLEdKVEeLl~~~~~Le~EV~RLk~ll~ 32 (34)
T 3c3f_A 3 MXQIEXKLEXILSXLYHXENEXARIXKLLX 32 (34)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHhhhhHHHHHHHHHHHHHh
Confidence 567899999999999999999999998764
No 164
>3ibv_A Exportin-T; karyopherin, heat repeat, cytoplasm, nucleus, RNA- binding, transport, tRNA processing, tRNA-binding, RNA binding protein; 3.10A {Schizosaccharomyces pombe} PDB: 3icq_T*
Probab=84.30 E-value=28 Score=41.60 Aligned_cols=212 Identities=9% Similarity=0.039 Sum_probs=121.5
Q ss_pred CCHHHHHHHHHHHHHhhCCchhHHHHHHcCCHHHHHHHHccCC--CHHHHHHHHHHHHHhhcC-chh----HHHHHhcCc
Q 006114 419 EDPDVQIHAVKVVANLAAEDINQEKIVEEGGLDALLLLLRTSQ--NTTILRVASGAIANLAMN-EMN----QGLIMSRGG 491 (660)
Q Consensus 419 ~d~~vr~~Aa~aL~nLa~~~en~~~Ive~GgI~~Lv~LL~~s~--d~~v~~~Aa~AL~nLA~~-~~n----~~~Ive~g~ 491 (660)
.++..|..|-..|..+-.++ +|......+|..++ ++.++-.|+..|.+.... +.. ....+....
T Consensus 20 sd~~~r~~A~~~L~~~q~sp---------~aw~~~~~iL~~~~~~~~~vr~fa~~~L~~~I~~l~~e~~~~~~~~lr~~l 90 (980)
T 3ibv_A 20 VGPIIKQQATDFIGSLRSSS---------TGWKICHEIFSEKTKYKPSTRLICLQTLSEKVREWNNESNLLELQMIRDSV 90 (980)
T ss_dssp SCHHHHHHHHHHHHHHHHST---------THHHHHHHHTTCTTTSCHHHHHHHHHHHHHHHHHCCTTTSHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHHHcCh---------hHHHHHHHHHhCCCCCCHHHHHHHHHHHHHHHHhCChhhhHHHHHHHHHHH
Confidence 37888888888886665544 35566667776443 789999999988876542 222 333333444
Q ss_pred cHHHHHhhcCCCCHHHHHHHHHHHHHHhc--ChhHHHHHHhccHHHHHHHHhcCCCH-HHHHHHHHHHHHhhcc----c-
Q 006114 492 GQLLAKTASKTDDPQTLRMVAGALANLCG--NEKLHTMLEEDGAIKALLAMVRSGNI-DVIAQVARGLANFAKC----E- 563 (660)
Q Consensus 492 I~~Ll~LL~~s~d~~v~~~Aa~aLanLa~--~~~~r~~iv~~G~V~~Lv~lL~s~~~-~v~~~Al~aLanLA~~----~- 563 (660)
+..+...-.....+-++...+.+|+.++. +|. .-.+.++-|+.++.++++ ......+++|..|+.. .
T Consensus 91 l~~l~~~~~~~~~~~IrnKL~~~la~l~~~~~p~-----~Wp~~i~~l~~~~~~~~~~~~~~~~LriL~~i~EEv~~~~~ 165 (980)
T 3ibv_A 91 WSYIKELSFLDEPAYISNAVQHLLTLLFLQLYPS-----NWNDFFASLQGVIAASSQSEFSNFYLKVLLSIGDEIADSLV 165 (980)
T ss_dssp HHHHHHCCSTTSCTHHHHHHHHHHHHHHHHHTTT-----TCTTHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHCCCCS
T ss_pred HHHHHHhcCCCCcHHHHHHHHHHHHHHHHHhCcc-----cCchHHHHHHHHhcCCChhHHHHHHHHHHHHhHHHHHhccc
Confidence 55554421112345677778888887762 222 123577777777765443 3444455555533311 0
Q ss_pred hh--hhhhcchhhhHHHhh-------cChHHHHHHhhcCCCHHHHHHHHHHHHHhhcCCccHHHHHhcCcHHHHHHHHhc
Q 006114 564 SR--AIVQGQRKGRSHLME-------DSALEWLIANSKTNSASTRRHVELALCHLAQNEDNARDFISRGGAKELVQISIE 634 (660)
Q Consensus 564 ~~--~~aq~~~e~r~~Li~-------~G~v~~Lv~lL~s~d~~vr~~Aa~AL~nLa~~~e~~~~Ive~G~l~~Lv~lL~s 634 (660)
++ ....-....+..+.. .+++..|.....+.++.++..+..+|.....+-.. ..++..+.++.+..++.+
T Consensus 166 ~~~~~~~~r~~~lkd~m~~~~~~~i~~~~~~iL~~~~~~~~~~l~~~~L~~l~s~i~wi~~-~~i~~~~ll~~l~~~L~~ 244 (980)
T 3ibv_A 166 LKTDVQIQKDNLVKDAIRANDMSDIVSFVYEMMLAYSNAKNYGTVGLCLQVYAQWVSWINI-NLIVNEPCMNLLYSFLQI 244 (980)
T ss_dssp CCCHHHHHHHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTSCH-HHHHCHHHHHHHHHHTTS
T ss_pred ccCHHHHhhhHHHHHHHHhccHHHHHHHHHHHHHHHhccCCHHHHHHHHHHHHHHHhhcCH-HhhhcchHHHHHHHHcCC
Confidence 00 000000112333332 22333333333446788888888888888877543 455667788888887764
Q ss_pred CChHHHHHHHHHHH
Q 006114 635 SSREDIRNLAKKTM 648 (660)
Q Consensus 635 ~s~~~ir~~A~~~L 648 (660)
+.++..|...|
T Consensus 245 ---~~~r~~A~ecL 255 (980)
T 3ibv_A 245 ---EELRCAACETM 255 (980)
T ss_dssp ---HHHHHHHHHHH
T ss_pred ---hHHHHHHHHHH
Confidence 56677777655
No 165
>1kd8_A GABH AIV, GCN4 acid base heterodimer acid-D12IA16V; coiled coil heterodimer, de novo protein; 1.90A {Synthetic} SCOP: h.1.3.1 PDB: 1kdd_A 1kd9_A
Probab=84.30 E-value=0.93 Score=31.53 Aligned_cols=30 Identities=33% Similarity=0.341 Sum_probs=26.9
Q ss_pred HHhhhhhhhHHHHhhhhHHHHHHHHHhhhh
Q 006114 105 MRNLVTRSEFLEKENAHLELEVEKILGELN 134 (660)
Q Consensus 105 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 134 (660)
|..|+.+.|.|..+|..|+.||.||++.+-
T Consensus 3 MnQLE~kVEeLl~~~~~Le~EV~RL~~ll~ 32 (36)
T 1kd8_A 3 VKQLEAEVEEIESEVWHLENEVARLEKENA 32 (36)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHhhHHHHHHHHHHHHHhc
Confidence 567899999999999999999999988763
No 166
>1x8y_A Lamin A/C; structural protein, intermediate filament protein; 2.20A {Homo sapiens} SCOP: h.1.20.1 PDB: 3v5b_A 3v4w_A 3v4q_A
Probab=84.19 E-value=6.3 Score=33.06 Aligned_cols=73 Identities=21% Similarity=0.110 Sum_probs=50.2
Q ss_pred hHHHHHHHHHHHhhHHHHHHhhhhhhhHHHHhhhhHHHHHHHHHhhhhhhhhhhhhHHHHHHHHHHHhhhhhhhhhhhhh
Q 006114 87 KYEFEKQLRESQISYDESMRNLVTRSEFLEKENAHLELEVEKILGELNHQKDQNNLKREKIVQLEISLKNSKQQQLDNSS 166 (660)
Q Consensus 87 ~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 166 (660)
+..||+.|++.+..|.-.+..+... ..+|+.++.+++.++.+|. .
T Consensus 12 ~~~Le~~l~e~E~~~~~~l~~~q~~-------i~~lE~el~~~r~e~~~ql----------------------------~ 56 (86)
T 1x8y_A 12 LAAKEAKLRDLEDSLARERDTSRRL-------LAEKEREMAEMRARMQQQL----------------------------D 56 (86)
T ss_dssp CTTHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHH----------------------------H
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHH----------------------------H
Confidence 4468889999888887765555544 4445555555555554442 1
Q ss_pred hHHHHHHhhHHHHHHHHHHHHHHHHHHh
Q 006114 167 YQKVLADTTQMYEKKITELIKQLEIEHA 194 (660)
Q Consensus 167 ~~~~~~~~~~~~~~~~~~l~~~l~~e~~ 194 (660)
-++.|-+.+..++.||+--++.||-|-.
T Consensus 57 EYq~LlnvK~~Le~EIatYRkLLEGEe~ 84 (86)
T 1x8y_A 57 EYQELLDIKLALDMEIHAYRKLLEGEEE 84 (86)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHhhHHHHHHHHHHHcCCcc
Confidence 2456677788899999999999987754
No 167
>1lsh_A Lipovitellin (LV-1N, LV-1C); vitellogenin, lipoprotein, plasma apolipoprote apolipoprotein B, APOB; HET: PLD UPL; 1.90A {Ichthyomyzon unicuspis} SCOP: a.118.4.1 f.7.1.1 f.7.1.1
Probab=83.57 E-value=5.1 Score=48.51 Aligned_cols=132 Identities=18% Similarity=0.125 Sum_probs=81.8
Q ss_pred HHHHHHHHccC---CCHHHHHHHHHHHHHhhcC----chhHHHHHhcCccHHHHHhhc---CCCCHHHHHHHHHHHHHHh
Q 006114 450 LDALLLLLRTS---QNTTILRVASGAIANLAMN----EMNQGLIMSRGGGQLLAKTAS---KTDDPQTLRMVAGALANLC 519 (660)
Q Consensus 450 I~~Lv~LL~~s---~d~~v~~~Aa~AL~nLA~~----~~n~~~Ive~g~I~~Ll~LL~---~s~d~~v~~~Aa~aLanLa 519 (660)
+..+..++... .++.++..|..++++|+.. ... +....++.+...+. ...+..-...++.+|+|+.
T Consensus 393 l~~~~~l~~~~~~~~~~~l~~ta~La~gslV~k~c~~~~~----c~~~~v~~i~~~l~~~~~~~~~~~~~~~LkaLGN~g 468 (1056)
T 1lsh_A 393 LSYARELLNTSFIRNRPILRKTAVLGYGSLVFRYCANTVS----CPDELLQPLHDLLSQSSDRAKEEEIVLALKALGNAG 468 (1056)
T ss_dssp HHHHHHHHTCHHHHTCHHHHHHHHHHHHHHHHHHHTTCSS----CCGGGTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHhCcccccCHHHHHHHHHHHHHHHHHHhccCCC----CCHHHHHHHHHHHHHHHhcCChHHHHHHHHHhhccC
Confidence 45555666421 3566777777777776532 111 11123444444332 2356677778889999987
Q ss_pred cChhHHHHHHhccHHHHHHHHhcC-------CCHHHHHHHHHHHHHhhccchhhhhhcchhhhHHHhhcChHHHHHHhhc
Q 006114 520 GNEKLHTMLEEDGAIKALLAMVRS-------GNIDVIAQVARGLANFAKCESRAIVQGQRKGRSHLMEDSALEWLIANSK 592 (660)
Q Consensus 520 ~~~~~r~~iv~~G~V~~Lv~lL~s-------~~~~v~~~Al~aLanLA~~~~~~~aq~~~e~r~~Li~~G~v~~Lv~lL~ 592 (660)
.- +.++.|..++.. ....++..|+.+|..++...++ -+-+.++.+..
T Consensus 469 ~p----------~~l~~l~~~l~~~~~~~~~~~~rvr~aAi~ALr~~~~~~p~----------------~v~~il~~i~~ 522 (1056)
T 1lsh_A 469 QP----------NSIKKIQRFLPGQGKSLDEYSTRVQAEAIMALRNIAKRDPR----------------KVQEIVLPIFL 522 (1056)
T ss_dssp CG----------GGHHHHHTTSTTSSSCCCCSCHHHHHHHHHTTTTGGGTCHH----------------HHHHHHHHHHH
T ss_pred Ch----------hHHHHHHHhhcCccccccccchHHHHHHHHHHHHhhhhchH----------------HHHHHHHHHhc
Confidence 62 456777777642 2457888999999999855432 13345666663
Q ss_pred --CCCHHHHHHHHHHHHHhhc
Q 006114 593 --TNSASTRRHVELALCHLAQ 611 (660)
Q Consensus 593 --s~d~~vr~~Aa~AL~nLa~ 611 (660)
..++.+|..|+.+|...+-
T Consensus 523 n~~e~~EvRiaA~~~Lm~t~P 543 (1056)
T 1lsh_A 523 NVAIKSELRIRSCIVFFESKP 543 (1056)
T ss_dssp CTTSCHHHHHHHHHHHHHTCC
T ss_pred CCCCChHHHHHHHHHHHHHCc
Confidence 3578999999998876543
No 168
>1f5n_A Interferon-induced guanylate-binding protein 1; GBP, GTP hydrolysis, GDP, GMP, dynamin related, large GTPase family. GMPPNP, GPPNHP.; HET: GNP; 1.70A {Homo sapiens} SCOP: a.114.1.1 c.37.1.8 PDB: 1dg3_A* 2b8w_A* 2b92_A* 2bc9_A* 2d4h_A*
Probab=82.86 E-value=68 Score=36.17 Aligned_cols=58 Identities=26% Similarity=0.515 Sum_probs=44.6
Q ss_pred HHHHHHHHHHHhhhhchHHHHHHHHHHHhhhhhhHHHHhhhhhHHHHHHhhHHHHHHHHHHHHhhhhhhhhh
Q 006114 183 TELIKQLEIEHARSEGAEEQVDTMKKLISDNQKSIEQYEMENSTYQKALADTTQLYEKKIAELNKKLEDEHA 254 (660)
Q Consensus 183 ~~l~~~l~~e~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~ 254 (660)
.+=-|.++.|+.++..++-+...|+..+.+.++...+++ +.|+..|+-|..++|.|+.
T Consensus 483 ~~~~k~~~~~~~~~e~~~~~~~~l~~~~~~~~~~~~~~~--------------~~~~e~~~ql~~kme~~~~ 540 (592)
T 1f5n_A 483 TEKEKEIEVERVKAESAQASAKMLHEMQRKNEQMMEQKE--------------RSYQEHLKQLTEKMENDRV 540 (592)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--------------HHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--------------HHHHHHHHHHHHHHHHHHH
Confidence 344556677999999999999999999999987666554 4677777788888886665
No 169
>2oxj_A Hybrid alpha/beta peptide based on the GCN4-P1 Se heptad positions B and F substituted...; helix bundle, foldamer, unknown function; HET: B3K B3D B3E B3S B3Y B3X B3A BAL; 2.00A {Synthetic} PDB: 2oxk_A*
Probab=82.81 E-value=1.3 Score=30.38 Aligned_cols=30 Identities=30% Similarity=0.317 Sum_probs=26.9
Q ss_pred HHhhhhhhhHHHHhhhhHHHHHHHHHhhhh
Q 006114 105 MRNLVTRSEFLEKENAHLELEVEKILGELN 134 (660)
Q Consensus 105 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 134 (660)
|-.|+.|.|.|-.+|..|+.||.||+.-+.
T Consensus 3 MnQLE~kVEeLl~~n~~Le~eV~rLk~ll~ 32 (34)
T 2oxj_A 3 MXQLEXKVXELLXKNXHLEXEVXRLKXLVX 32 (34)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHS
T ss_pred HHHHHHHHHHHHHhhhhHHHHHHHHHHHHh
Confidence 567899999999999999999999988764
No 170
>3u0r_A Apoptosis inhibitor 5; heat repeat, armadillo repeat, lysine acetylation; 2.50A {Homo sapiens} PDB: 3v6a_A
Probab=82.45 E-value=9.6 Score=41.95 Aligned_cols=119 Identities=13% Similarity=0.076 Sum_probs=83.8
Q ss_pred CCHHHHHHHHHHHHHhhcC-chhHHHHHhcCccHHHHHhhcCCCCHHHHHHHHHHHHHHhcChhHHHHHHhccHHHHHHH
Q 006114 461 QNTTILRVASGAIANLAMN-EMNQGLIMSRGGGQLLAKTASKTDDPQTLRMVAGALANLCGNEKLHTMLEEDGAIKALLA 539 (660)
Q Consensus 461 ~d~~v~~~Aa~AL~nLA~~-~~n~~~Ive~g~I~~Ll~LL~~s~d~~v~~~Aa~aLanLa~~~~~r~~iv~~G~V~~Lv~ 539 (660)
.++..++.|+..|.....+ |+.+.. +|..++.++.+ .|+.++..|...|..+|.+ ++- ..++..|+.
T Consensus 40 g~~k~K~LaaQ~I~kffk~FP~l~~~-----Ai~a~lDLcED-ed~~IR~qaik~Lp~~ck~-~~i-----~kiaDvL~Q 107 (507)
T 3u0r_A 40 GGTKEKRLAAQFIPKFFKHFPELADS-----AINAQLDLCED-EDVSIRRQAIKELPQFATG-ENL-----PRVADILTQ 107 (507)
T ss_dssp SCHHHHHHHHHHHHHHGGGCGGGHHH-----HHHHHHHHHTC-SSHHHHHHHHHHGGGGCCT-TCH-----HHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHHHhhChhhHHH-----HHHHHHHHHhc-ccHHHHHHHHHhhHHHhhh-hhh-----hhHHHHHHH
Confidence 4688899999999988765 886554 57788899865 8999999999999999976 332 246678899
Q ss_pred HhcCCCHHHHHHHHHHHHHhhccchhhhhhcchhhhHHHhhcChHHHHHHhhcCCCHHHHHHHHHHHH
Q 006114 540 MVRSGNIDVIAQVARGLANFAKCESRAIVQGQRKGRSHLMEDSALEWLIANSKTNSASTRRHVELALC 607 (660)
Q Consensus 540 lL~s~~~~v~~~Al~aLanLA~~~~~~~aq~~~e~r~~Li~~G~v~~Lv~lL~s~d~~vr~~Aa~AL~ 607 (660)
+|...++.-...+-.+|..|-..++. |.+..+...+.++++.+|..+...|+
T Consensus 108 lLqtdd~~E~~~V~~sL~sllk~Dpk----------------~tl~~lf~~i~~~~e~~Rer~lkFi~ 159 (507)
T 3u0r_A 108 LLQTDDSAEFNLVNNALLSIFKMDAK----------------GTLGGLFSQILQGEDIVRERAIKFLS 159 (507)
T ss_dssp HTTCCCHHHHHHHHHHHHHHHHHCHH----------------HHHHHHHHHHHHSCHHHHHHHHHHHH
T ss_pred HHhccchHHHHHHHHHHHHHHhcChH----------------HHHHHHHHHHcccchHHHHHHHHHHH
Confidence 99988887766666666666544432 33333444444455666666555554
No 171
>2b9c_A Striated-muscle alpha tropomyosin; alpha-helix, coiled coil, alanine, axial stagger, radius, SIDE-chain packing, crystal packing; 2.30A {Rattus norvegicus} SCOP: h.1.5.1
Probab=81.98 E-value=17 Score=33.51 Aligned_cols=108 Identities=18% Similarity=0.262 Sum_probs=76.1
Q ss_pred HHHhhhhhhhhhhhhHHHHHHHHHHHhhhhhhhhhhhhhhHHHHHHhhHHHHHHHHHHHHHHHHHHhhhhchHHHHHHHH
Q 006114 128 KILGELNHQKDQNNLKREKIVQLEISLKNSKQQQLDNSSYQKVLADTTQMYEKKITELIKQLEIEHARSEGAEEQVDTMK 207 (660)
Q Consensus 128 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~e~~~~~~~~~~~~~l~ 207 (660)
|.++.|.++.... .+++.+||..|+..+..--+....|..++......+..+..-.-.++.--+++..+++++..+-
T Consensus 38 R~~k~lE~r~~~d---eEr~~~lE~qLkeak~~aeeadrKyeE~~RKl~~~E~dLeraeeRae~aE~k~~eLEeeL~~~~ 114 (147)
T 2b9c_A 38 RGMKVIESRAQKD---EEKMEIQEIQLKEAKHIAEDADRKYEEVARKLVIIESDLERAEERAELSEGKCAELEEELKTVT 114 (147)
T ss_dssp HHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHhhhccc---HHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4445554444333 4588999999999998888888888888888888888888877777777777777777777776
Q ss_pred HHHhhhhhhHHHHhhhhhHHHHHHhhHHHHHHHHHHHHhhhh
Q 006114 208 KLISDNQKSIEQYEMENSTYQKALADTTQLYEKKIAELNKKL 249 (660)
Q Consensus 208 ~~l~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~ 249 (660)
+.|..+.-+..++ +.--..|+.+|..|..+|
T Consensus 115 ~nlKsLE~~eeka-----------s~rE~~yee~I~~L~~kL 145 (147)
T 2b9c_A 115 NNLKSLEDKVEEL-----------LSKNYHLENEVARLKKLV 145 (147)
T ss_dssp HHHHHHHHTTTTH-----------HHHHHHHHHHHTTSCCCC
T ss_pred HHHHhhHHhHHHH-----------HHHHHHHHHHHHHHHHHh
Confidence 6666665333211 112346888888777665
No 172
>3gjx_A Exportin-1; transport, cytoplasm, nucleus, RNA-binding, acetylation, GTP-binding, HOST-virus interaction, nucleotide-binding, phosphoprotein; HET: GTP; 2.50A {Mus musculus} PDB: 3nby_A* 3nbz_A* 3nc0_A* 3nc1_A* 3gb8_A
Probab=81.85 E-value=21 Score=43.20 Aligned_cols=220 Identities=10% Similarity=0.036 Sum_probs=129.0
Q ss_pred cccchhhhhhcccCCCccccccchhhhhhcCchhHHHHH-hCCCHHHHHHhhC-CCCHHHHHHHHHHHHHhhC------C
Q 006114 366 YTKDYISKGSSRFGAPMSLQKSNPSRELSGQRATIAKIC-DEVGLPKILQLLT-SEDPDVQIHAVKVVANLAA------E 437 (660)
Q Consensus 366 ~~~g~i~~l~~~L~~~~~~vr~~~~~~laa~~~~~~~I~-e~ggI~~LV~LL~-s~d~~vr~~Aa~aL~nLa~------~ 437 (660)
.+-..++.++.++-++.+..|..+...+.. +- ..++.+.+..+|. +.++.+|-.|+.+|.+... .
T Consensus 25 ~Dv~~Le~lv~~ly~p~~~~r~qA~~~L~q-------~q~sp~aw~~~~~iL~~s~~~~vR~fAa~~L~~~I~~~W~~L~ 97 (1073)
T 3gjx_A 25 LDINLLDNVVNCLYHGEGAQQRMAQEVLTH-------LKEHPDAWTRVDTILEFSQNMNTKYYGLQILENVIKTRWKILP 97 (1073)
T ss_dssp CSHHHHHHHHHTTTCSSHHHHHHHHHHHHT-------SSCCSCHHHHHTCC---CCSHHHHHHHHHHHHHHHHHTGGGSC
T ss_pred CCHHHHHHHHHHHhCCCHHHHHHHHHHHHH-------HHcCchHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHhhhhhCC
Confidence 455566666666655544333322222211 11 2244555556665 5688999999999998655 2
Q ss_pred chhHHHHHHcCCHHHHHHHHcc----CCCHHHHHHHHHHHHHhhcC--chhHHHHHhcCccHHHHHhhcCCCCHHHHHHH
Q 006114 438 DINQEKIVEEGGLDALLLLLRT----SQNTTILRVASGAIANLAMN--EMNQGLIMSRGGGQLLAKTASKTDDPQTLRMV 511 (660)
Q Consensus 438 ~en~~~Ive~GgI~~Lv~LL~~----s~d~~v~~~Aa~AL~nLA~~--~~n~~~Ive~g~I~~Ll~LL~~s~d~~v~~~A 511 (660)
++.+..+.+. .+..+.....+ ..++.++...+.+++.|+.. |.. ..+.++-++..+.. ++.....+
T Consensus 98 ~e~~~~LR~~-Ll~~l~~~~~~~~~~e~~~~vinKLa~~La~I~k~~~P~~-----Wp~fi~dLv~~~~~--~~~~~~~~ 169 (1073)
T 3gjx_A 98 RNQCEGIKKY-VVGLIIKTSSDPTCVEKEKVYIGKLNMILVQILKQEWPKH-----WPTFISDIVGASRT--SESLCQNN 169 (1073)
T ss_dssp HHHHHHHHHH-HHHHHHHHHTCGGGGTSCHHHHHHHHHHHHHHHHHHTTTT-----CTTHHHHHHHHHHH--CHHHHHHH
T ss_pred HHHHHHHHHH-HHHHHHHHccCccccccchHHHHHHHHHHHHHHHHhChhh-----ccHHHHHHHHHhCC--CHHHHHHH
Confidence 3334434332 44444444321 13577778888888888754 332 24567777777753 45566667
Q ss_pred HHHHHHHhcC--h------------hHHHHHHhc--cHHHHHHHHhc-CCCHHHHHHHHHHHHHhhccchhhhhhcchhh
Q 006114 512 AGALANLCGN--E------------KLHTMLEED--GAIKALLAMVR-SGNIDVIAQVARGLANFAKCESRAIVQGQRKG 574 (660)
Q Consensus 512 a~aLanLa~~--~------------~~r~~iv~~--G~V~~Lv~lL~-s~~~~v~~~Al~aLanLA~~~~~~~aq~~~e~ 574 (660)
+..|..|+.. . ..+..|... .+++.+..++. +.++.+...++.+|+.+...-+
T Consensus 170 L~IL~~L~EEV~d~~~~~l~~~r~~~lk~~L~~~~~~Il~ll~~iL~~~~~~~lv~~~L~~L~~~~sWI~---------- 239 (1073)
T 3gjx_A 170 MVILKLLSEEVFDFSSGQITQVKAKHLKDSMCNEFSQIFQLCQFVMENSQNAPLVHATLETLLRFLNWIP---------- 239 (1073)
T ss_dssp HHHHHHHHHHHTTSHHHHBCHHHHHHHHHHHHHTCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHTTTSC----------
T ss_pred HHHHHHHHHHHHhcccccccHHHHHHHHHHHHHHHHHHHHHHHHHhcccCCHHHHHHHHHHHHHHHHhcC----------
Confidence 7777777621 0 112223322 22333334443 5688888899999999886532
Q ss_pred hHHHhhcChHHHHH-HhhcCCCHHHHHHHHHHHHHhhcC
Q 006114 575 RSHLMEDSALEWLI-ANSKTNSASTRRHVELALCHLAQN 612 (660)
Q Consensus 575 r~~Li~~G~v~~Lv-~lL~s~d~~vr~~Aa~AL~nLa~~ 612 (660)
-..+...+.++.++ .++ .++.++..|+.+|+.+...
T Consensus 240 i~~i~~~~ll~~L~~~~L--~~~~~r~aA~dcL~eIv~k 276 (1073)
T 3gjx_A 240 LGYIFETKLISTLIYKFL--NVPMFRNVSLKCLTEIAGV 276 (1073)
T ss_dssp THHHHSSSHHHHHHHHTS--SSHHHHHHHHHHHHHHHHS
T ss_pred HHHhccchHHHHHHHHhc--CChHHHHHHHHHHHHHHhc
Confidence 13466778888774 555 4678999999999998763
No 173
>2wq1_A General control protein GCN4; TAA, nucleus, coiled coil, DNA-binding, protein export, ION coordination, polar core residues; 1.08A {Saccharomyces cerevisiae} PDB: 2wq0_A 2wq2_A 2wq3_A 2wpz_A 2wpy_A 1ij0_A 1ij1_A 1gcm_A 1rb5_A 1rb6_A 1rb1_A 1rb4_A 1swi_A 3k7z_A 1zii_A 1zij_A 1ij2_A 1ij3_A 1zil_A 1zim_A ...
Probab=81.71 E-value=1.8 Score=29.56 Aligned_cols=29 Identities=17% Similarity=0.079 Sum_probs=26.1
Q ss_pred HHhhhhhhhHHHHhhhhHHHHHHHHHhhh
Q 006114 105 MRNLVTRSEFLEKENAHLELEVEKILGEL 133 (660)
Q Consensus 105 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 133 (660)
|..|+.|.|.|-.+|..|+.||.||.+-+
T Consensus 2 MnQLEdKVEell~~~~~le~EV~Rl~~ll 30 (33)
T 2wq1_A 2 MKQLEDKIEENTSKIYHNTNEIARNTKLV 30 (33)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred chHHHHHHHHHHHhhHHHHHHHHHHHHHh
Confidence 56789999999999999999999998755
No 174
>2hy6_A General control protein GCN4; protein design, parallel heptamer, protein structure, biosyn protein; 1.25A {Saccharomyces cerevisiae} SCOP: h.1.3.1 PDB: 2nrn_A 3crp_A 2b1f_A 3crp_B 2ipz_A 3ck4_A 3ck4_B 2b22_A 1ce9_A
Probab=81.58 E-value=1.4 Score=30.27 Aligned_cols=29 Identities=24% Similarity=0.327 Sum_probs=26.0
Q ss_pred HHhhhhhhhHHHHhhhhHHHHHHHHHhhh
Q 006114 105 MRNLVTRSEFLEKENAHLELEVEKILGEL 133 (660)
Q Consensus 105 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 133 (660)
|..|+.+.|.|..+|..|+.||.||.+-+
T Consensus 3 MnQLEdkVEeLl~~~~~Le~eV~RL~~ll 31 (34)
T 2hy6_A 3 VKQLADAVEELASANYHLANAVARLAKAV 31 (34)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHhhHHHHHHHHHHHHHh
Confidence 56788999999999999999999998765
No 175
>2x19_B Importin-13; nuclear transport, protein transport; HET: GTP; 2.80A {Homo sapiens} PDB: 2xwu_B
Probab=81.12 E-value=24 Score=41.43 Aligned_cols=129 Identities=12% Similarity=0.004 Sum_probs=87.1
Q ss_pred CCCHHHHHHHHHHHHHhhcCchhHHHHHhcCccHHHHHhhcCCCCHHHHHHHHHHHHHHhc-----ChhHHHHHHhccHH
Q 006114 460 SQNTTILRVASGAIANLAMNEMNQGLIMSRGGGQLLAKTASKTDDPQTLRMVAGALANLCG-----NEKLHTMLEEDGAI 534 (660)
Q Consensus 460 s~d~~v~~~Aa~AL~nLA~~~~n~~~Ive~g~I~~Ll~LL~~s~d~~v~~~Aa~aLanLa~-----~~~~r~~iv~~G~V 534 (660)
++|+..+..|-..|..+-..|+ +...+..+|..+.++.++..|+.+|.|... -+......++...+
T Consensus 36 ~~~~~~r~~A~~~L~~~~~~p~---------~~~~~~~lL~~~~~~~vr~~aa~~L~~~i~~~w~~l~~~~~~~ir~~ll 106 (963)
T 2x19_B 36 DPNIENKNLAQKWLMQAQVSPQ---------AWHFSWQLLQPDKVPEIQYFGASALHIKISRYWSDIPTDQYESLKAQLF 106 (963)
T ss_dssp CCCHHHHHHHHHHHHHHHHSTT---------HHHHHHHHTSTTSCHHHHHHHHHHHHHHHHHCGGGSCGGGHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHHhcCHH---------HHHHHHHHhcCCCchHHHHHHHHHHHHHHHhCHHhCCHHHHHHHHHHHH
Confidence 6788888888888888766554 666777778766788999999999998762 12223333444455
Q ss_pred HHHHHHhcCCCHHHHHHHHHHHHHhhccchhhhhhcchhhhHHHhhcChHHHHHHhhcC-----CCHHHHHHHHHHHHHh
Q 006114 535 KALLAMVRSGNIDVIAQVARGLANFAKCESRAIVQGQRKGRSHLMEDSALEWLIANSKT-----NSASTRRHVELALCHL 609 (660)
Q Consensus 535 ~~Lv~lL~s~~~~v~~~Al~aLanLA~~~~~~~aq~~~e~r~~Li~~G~v~~Lv~lL~s-----~d~~vr~~Aa~AL~nL 609 (660)
..+... .+..+.++...+.+|+.|+..+- +.. + .+.++.|+..+.+ .++..+..+..+|..+
T Consensus 107 ~~l~~~-~~~~~~ir~kl~~~la~i~~~~~-------p~~----W-p~~l~~l~~~~~~~~~~~~~~~~~~~~l~iL~~l 173 (963)
T 2x19_B 107 TQITRF-ASGSKIVLTRLCVALASLALSMM-------PDA----W-PCAVADMVRLFQAEDSPVDGQGRCLALLELLTVL 173 (963)
T ss_dssp HHHHHT-TTSCHHHHHHHHHHHHHHHHHHT-------TTT----S-TTHHHHHHHHHCC------CHHHHHHHHHHHHHH
T ss_pred HHHHHH-cCCCHHHHHHHHHHHHHHHHHhC-------ccc----c-chHHHHHHHHHhhhccCCCcHHHHHHHHHHHHhC
Confidence 555542 12468899999999999986421 000 1 3577788887765 2555677777777777
Q ss_pred h
Q 006114 610 A 610 (660)
Q Consensus 610 a 610 (660)
+
T Consensus 174 ~ 174 (963)
T 2x19_B 174 P 174 (963)
T ss_dssp H
T ss_pred H
Confidence 6
No 176
>3u0r_A Apoptosis inhibitor 5; heat repeat, armadillo repeat, lysine acetylation; 2.50A {Homo sapiens} PDB: 3v6a_A
Probab=80.89 E-value=15 Score=40.35 Aligned_cols=117 Identities=18% Similarity=0.231 Sum_probs=85.8
Q ss_pred CCHHHHHHHHHHHHHHh-cChhHHHHHHhccHHHHHHHHhcCCCHHHHHHHHHHHHHhhccchhhhhhcchhhhHHHhhc
Q 006114 503 DDPQTLRMVAGALANLC-GNEKLHTMLEEDGAIKALLAMVRSGNIDVIAQVARGLANFAKCESRAIVQGQRKGRSHLMED 581 (660)
Q Consensus 503 ~d~~v~~~Aa~aLanLa-~~~~~r~~iv~~G~V~~Lv~lL~s~~~~v~~~Al~aLanLA~~~~~~~aq~~~e~r~~Li~~ 581 (660)
+++...+.|+..|.... ..|+.+. .++.++++++...+..|+..|+..|..||.+ +.+ .
T Consensus 40 g~~k~K~LaaQ~I~kffk~FP~l~~-----~Ai~a~lDLcEDed~~IR~qaik~Lp~~ck~--~~i-------------~ 99 (507)
T 3u0r_A 40 GGTKEKRLAAQFIPKFFKHFPELAD-----SAINAQLDLCEDEDVSIRRQAIKELPQFATG--ENL-------------P 99 (507)
T ss_dssp SCHHHHHHHHHHHHHHGGGCGGGHH-----HHHHHHHHHHTCSSHHHHHHHHHHGGGGCCT--TCH-------------H
T ss_pred CCHHHHHHHHHHHHHHHhhChhhHH-----HHHHHHHHHHhcccHHHHHHHHHhhHHHhhh--hhh-------------h
Confidence 57889999999888775 7788776 4677999999999999999999999999975 222 3
Q ss_pred ChHHHHHHhhcCCCHHHHHHHHHHHHHhhc-CCccHHHHHhcCcHHHHHHHHhcCChHHHHHHHHHHH
Q 006114 582 SALEWLIANSKTNSASTRRHVELALCHLAQ-NEDNARDFISRGGAKELVQISIESSREDIRNLAKKTM 648 (660)
Q Consensus 582 G~v~~Lv~lL~s~d~~vr~~Aa~AL~nLa~-~~e~~~~Ive~G~l~~Lv~lL~s~s~~~ir~~A~~~L 648 (660)
.+++.|+.+|.++++.-...+-.+|..|-. ++. |.+..|..-+..+ .+.+|..+.+.|
T Consensus 100 kiaDvL~QlLqtdd~~E~~~V~~sL~sllk~Dpk--------~tl~~lf~~i~~~-~e~~Rer~lkFi 158 (507)
T 3u0r_A 100 RVADILTQLLQTDDSAEFNLVNNALLSIFKMDAK--------GTLGGLFSQILQG-EDIVRERAIKFL 158 (507)
T ss_dssp HHHHHHHHHTTCCCHHHHHHHHHHHHHHHHHCHH--------HHHHHHHHHHHHS-CHHHHHHHHHHH
T ss_pred hHHHHHHHHHhccchHHHHHHHHHHHHHHhcChH--------HHHHHHHHHHccc-chHHHHHHHHHH
Confidence 467889999999998888888888876644 322 2333444444333 355666665554
No 177
>2bni_A General control protein GCN4; four helix bundle, antiparallel four helix bundle acyl transferase; HET: TYZ; 1.5A {Saccharomyces cerevisiae} SCOP: h.1.3.1 PDB: 2ccn_A 1w5k_A* 2ccf_A 2cce_A 1w5j_A* 1uo2_A 1gcl_A 1uo1_A 1unv_A 1uo0_A 1unt_A 1uo5_A 1unz_A 1unx_A 1unu_A 1unw_A 1uo4_A 1uo3_A 1uny_A 1u9f_A* ...
Probab=80.67 E-value=1.5 Score=30.24 Aligned_cols=30 Identities=20% Similarity=0.258 Sum_probs=26.5
Q ss_pred HHhhhhhhhHHHHhhhhHHHHHHHHHhhhh
Q 006114 105 MRNLVTRSEFLEKENAHLELEVEKILGELN 134 (660)
Q Consensus 105 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 134 (660)
|..|+.|.|.|-.+|..|+.||.||+.-|.
T Consensus 3 MnQLEdKvEeLl~~~~~L~~EV~RLk~lL~ 32 (34)
T 2bni_A 3 MKQIEDKLEEILSKGHHICNELARIKKLLG 32 (34)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHHHC-
T ss_pred hhHHHHHHHHHHHccHHHHHHHHHHHHHhc
Confidence 567899999999999999999999988764
No 178
>3gae_A Protein DOA1; UFD3, CDC48, armadillo repeat, nucleus, phosphoprotein, UBL conjugation pathway, WD repeat, nuclear protein; 1.60A {Saccharomyces cerevisiae}
Probab=80.53 E-value=4.5 Score=40.72 Aligned_cols=102 Identities=14% Similarity=0.099 Sum_probs=67.0
Q ss_pred CCCHHHHHHHHHHHHHhhcCch-hHHHHHhcCccHHHHHhhc----CC---CCHHHHHHHHHHHHHHhcC-hhHHHHHHh
Q 006114 460 SQNTTILRVASGAIANLAMNEM-NQGLIMSRGGGQLLAKTAS----KT---DDPQTLRMVAGALANLCGN-EKLHTMLEE 530 (660)
Q Consensus 460 s~d~~v~~~Aa~AL~nLA~~~~-n~~~Ive~g~I~~Ll~LL~----~s---~d~~v~~~Aa~aLanLa~~-~~~r~~iv~ 530 (660)
+.++..+-.++++++|+..++. .+..+.....+..++..+. +. ++..++..++..+.|++.. ...+. .
T Consensus 101 ~~~~~~~ml~lR~l~NlF~~~~~g~~l~~~~~~~~~i~~~i~~~~~~~~~~~~~nl~iA~ATl~~N~av~~~~~~~---~ 177 (253)
T 3gae_A 101 NKNITLTMLTVRILVNCFNNENWGVKLLESNQVYKSIFETIDTEFSQASAKQSQNLAIAVSTLIFNYSALVTKGNS---D 177 (253)
T ss_dssp CSSHHHHHHHHHHHHHHTTCTTTHHHHHTSHHHHTTHHHHSCSCCTTCCHHHHHHHHHHHHHHHHHHHHHHHTSCS---C
T ss_pred CCchhHHHHHHHHHHHcccCCchHHHHHhcchhHHHHHHHHHHHhhhcccCCchhHHHHHHHHHHHHHHHHhhccc---h
Confidence 4577888899999999999988 5666655433444444332 11 3557888888999999831 10000 1
Q ss_pred ccHHHHHHHHhcC---------CCHHHHHHHHHHHHHhhccch
Q 006114 531 DGAIKALLAMVRS---------GNIDVIAQVARGLANFAKCES 564 (660)
Q Consensus 531 ~G~V~~Lv~lL~s---------~~~~v~~~Al~aLanLA~~~~ 564 (660)
......++.++.. .+++....++.+||+|...++
T Consensus 178 ~e~~~~l~~~i~~~~~~~e~~~~d~Ea~yR~LvAlGtL~~~~~ 220 (253)
T 3gae_A 178 LELLPIVADAINTKYGPLEEYQECEEAAYRLTVAYGNLATVEP 220 (253)
T ss_dssp TTHHHHHHHHHHTTTTTSHHHHHSHHHHHHHHHHHHHHHHHSG
T ss_pred HHHHHHHHHHHHHHhcccccccCCHHHHHHHHHHHHHHHhCcH
Confidence 2344555555542 378899999999999996543
No 179
>2e7s_A RAB guanine nucleotide exchange factor SEC2; coiled coil, endocytosis/exocytosis complex; 3.00A {Saccharomyces cerevisiae} SCOP: h.1.33.1
Probab=80.52 E-value=4.5 Score=36.84 Aligned_cols=73 Identities=22% Similarity=0.247 Sum_probs=52.8
Q ss_pred ccchhHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHhhhhccHHHHHHHHHHHHHHHHhhhhHHHHHHHHhhCCC
Q 006114 277 NQGQKEVHELCVKLKETRQLHESAVYEVQTLKSEYKNLLEEKETMSDELQAARQRLLVEEKQRKAIEYELVKLKKTAPE 355 (660)
Q Consensus 277 ~~~~~e~~~Lk~~Le~e~~~~e~~e~E~~~lks~l~~l~~~~~~~~eel~~~~k~l~~e~~~rkkLe~E~~~l~~~l~~ 355 (660)
..-..++..|...|.++...|..+|.+...+..++-+|+. ++++|... |..+.-..+..++.....+..++..
T Consensus 42 ~~~~~e~~~L~~~l~eE~~~R~~aE~~~~~ie~ElE~LTa---sLFeEAN~---MVa~ar~~~~~~e~r~~~L~~ql~e 114 (135)
T 2e7s_A 42 SDRDDEVKRLREDIAKENELRTKAEEEADKLNKEVEDLTA---SLFDEANN---LVADARMEKYAIEILNKRLTEQLRE 114 (135)
T ss_dssp TTHHHHHHTHHHHHHHTTSHHHHHHHTTHHHHHHHHHHHH---HHHHHHHH---HHHHTTHHHHHHHHHHHHHHHTTTH
T ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3445677889999999999999999888888888888875 56666655 4444444556677777777766543
No 180
>3swk_A Vimentin; cytoskeleton, intermediate filament, alpha-helix, structural; 1.70A {Homo sapiens}
Probab=80.22 E-value=12 Score=31.34 Aligned_cols=68 Identities=19% Similarity=0.219 Sum_probs=32.5
Q ss_pred HHHHHHHHHHHHHHHhHHHHHHHHHHHHHHH-------HHhhhhccHHHHHHHHHHHHHHHHhhhhHHHHHHHHh
Q 006114 284 HELCVKLKETRQLHESAVYEVQTLKSEYKNL-------LEEKETMSDELQAARQRLLVEEKQRKAIEYELVKLKK 351 (660)
Q Consensus 284 ~~Lk~~Le~e~~~~e~~e~E~~~lks~l~~l-------~~~~~~~~eel~~~~k~l~~e~~~rkkLe~E~~~l~~ 351 (660)
.+|+..++..+..+..++-|+..++..+.++ .....+.+.++..++|-+++-.-.+-.|+..+.+++.
T Consensus 3 ~eLr~qi~~l~~e~~~l~~e~dn~~~~~edfk~KyE~E~~~R~~~E~d~~~LrkdvD~a~l~r~dLE~kvesL~e 77 (86)
T 3swk_A 3 RELRRQVDQLTNDKARVEVERDNLAEDIMRLREKLQEEMLQREEAENTLQSFRQDVDNASLARLDLERKVESLQE 77 (86)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHH
Confidence 3444444444444444444444444333322 2223344555556666665555555555555555543
No 181
>3ibv_A Exportin-T; karyopherin, heat repeat, cytoplasm, nucleus, RNA- binding, transport, tRNA processing, tRNA-binding, RNA binding protein; 3.10A {Schizosaccharomyces pombe} PDB: 3icq_T*
Probab=78.58 E-value=46 Score=39.75 Aligned_cols=187 Identities=7% Similarity=0.097 Sum_probs=110.6
Q ss_pred CCHHHHHHhhCCC---CHHHHHHHHHHHHHhhC--Cch----hHHHHHHcCCHHHHHHHHc-cCCCHHHHHHHHHHHHHh
Q 006114 407 VGLPKILQLLTSE---DPDVQIHAVKVVANLAA--EDI----NQEKIVEEGGLDALLLLLR-TSQNTTILRVASGAIANL 476 (660)
Q Consensus 407 ggI~~LV~LL~s~---d~~vr~~Aa~aL~nLa~--~~e----n~~~Ive~GgI~~Lv~LL~-~s~d~~v~~~Aa~AL~nL 476 (660)
++......+|..+ +..+|-.|+.+|.+... .++ .+..+.+. .+..+.. .. ....+-++...+.+|..|
T Consensus 40 ~aw~~~~~iL~~~~~~~~~vr~fa~~~L~~~I~~l~~e~~~~~~~~lr~~-ll~~l~~-~~~~~~~~~IrnKL~~~la~l 117 (980)
T 3ibv_A 40 TGWKICHEIFSEKTKYKPSTRLICLQTLSEKVREWNNESNLLELQMIRDS-VWSYIKE-LSFLDEPAYISNAVQHLLTLL 117 (980)
T ss_dssp THHHHHHHHTTCTTTSCHHHHHHHHHHHHHHHHHCCTTTSHHHHHHHHHH-HHHHHHH-CCSTTSCTHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHhCCCCCCHHHHHHHHHHHHHHHHhCChhhhHHHHHHHHHH-HHHHHHH-hcCCCCcHHHHHHHHHHHHHH
Confidence 4566666777643 78999999999987554 344 34444332 2333333 11 023456888899999888
Q ss_pred hcC--chhHHHHHhcCccHHHHHhhcCCCCH-HHHHHHHHHHHHHh---cC------h-------hHHHHHHhc---cHH
Q 006114 477 AMN--EMNQGLIMSRGGGQLLAKTASKTDDP-QTLRMVAGALANLC---GN------E-------KLHTMLEED---GAI 534 (660)
Q Consensus 477 A~~--~~n~~~Ive~g~I~~Ll~LL~~s~d~-~v~~~Aa~aLanLa---~~------~-------~~r~~iv~~---G~V 534 (660)
+.. |. ...+.++.++.++..+ ++ .+....+.+|..++ .+ + ..+..|... .++
T Consensus 118 ~~~~~p~-----~Wp~~i~~l~~~~~~~-~~~~~~~~~LriL~~i~EEv~~~~~~~~~~~~~r~~~lkd~m~~~~~~~i~ 191 (980)
T 3ibv_A 118 FLQLYPS-----NWNDFFASLQGVIAAS-SQSEFSNFYLKVLLSIGDEIADSLVLKTDVQIQKDNLVKDAIRANDMSDIV 191 (980)
T ss_dssp HHHHTTT-----TCTTHHHHHHHHHHHH-CCHHHHHHHHHHHHHHHHHHCCCCSCCCHHHHHHHHHHHHHHHHHTHHHHH
T ss_pred HHHhCcc-----cCchHHHHHHHHhcCC-ChhHHHHHHHHHHHHhHHHHHhcccccCHHHHhhhHHHHHHHHhccHHHHH
Confidence 754 23 1234667777777532 22 23333444555333 11 0 012223221 113
Q ss_pred HHHHHHh----cCCCHHHHHHHHHHHHHhhccchhhhhhcchhhhHHHhhcChHHHHHHhhcCCCHHHHHHHHHHHHHhh
Q 006114 535 KALLAMV----RSGNIDVIAQVARGLANFAKCESRAIVQGQRKGRSHLMEDSALEWLIANSKTNSASTRRHVELALCHLA 610 (660)
Q Consensus 535 ~~Lv~lL----~s~~~~v~~~Al~aLanLA~~~~~~~aq~~~e~r~~Li~~G~v~~Lv~lL~s~d~~vr~~Aa~AL~nLa 610 (660)
+..+.++ .+.++.+...++.+|+.....-+ -..+...+.++.+..++.+ +.++..|+.+|+.+.
T Consensus 192 ~~~~~iL~~~~~~~~~~l~~~~L~~l~s~i~wi~----------~~~i~~~~ll~~l~~~L~~--~~~r~~A~ecL~ei~ 259 (980)
T 3ibv_A 192 SFVYEMMLAYSNAKNYGTVGLCLQVYAQWVSWIN----------INLIVNEPCMNLLYSFLQI--EELRCAACETMTEIV 259 (980)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTSC----------HHHHHCHHHHHHHHHHTTS--HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhccCCHHHHHHHHHHHHHHHhhcC----------HHhhhcchHHHHHHHHcCC--hHHHHHHHHHHHHHH
Confidence 3333333 34788898999999988875422 1345567788888888875 799999999999987
Q ss_pred cCC
Q 006114 611 QNE 613 (660)
Q Consensus 611 ~~~ 613 (660)
...
T Consensus 260 ~k~ 262 (980)
T 3ibv_A 260 NKK 262 (980)
T ss_dssp HSC
T ss_pred HcC
Confidence 644
No 182
>2r2v_A GCN4 leucine zipper; coiled coils, anti-parallel tetramer, protein design, de novo protein; HET: CIT; 1.90A {Saccharomyces cerevisiae} SCOP: h.1.3.1
Probab=77.17 E-value=3 Score=28.71 Aligned_cols=29 Identities=14% Similarity=0.190 Sum_probs=25.8
Q ss_pred HHhhhhhhhHHHHhhhhHHHHHHHHHhhh
Q 006114 105 MRNLVTRSEFLEKENAHLELEVEKILGEL 133 (660)
Q Consensus 105 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 133 (660)
|..|+.|.|.|..+|.+|+.|+.|+.+-|
T Consensus 3 MnQledKvEel~~~~~~l~nEv~Rl~~lL 31 (34)
T 2r2v_A 3 LKQVADKLEEVASKLYHNANELARVAKLL 31 (34)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHhHHHHHHHHHHHHHh
Confidence 56788999999999999999999998765
No 183
>1lsh_A Lipovitellin (LV-1N, LV-1C); vitellogenin, lipoprotein, plasma apolipoprote apolipoprotein B, APOB; HET: PLD UPL; 1.90A {Ichthyomyzon unicuspis} SCOP: a.118.4.1 f.7.1.1 f.7.1.1
Probab=75.62 E-value=17 Score=43.95 Aligned_cols=163 Identities=10% Similarity=0.043 Sum_probs=99.2
Q ss_pred HHHHHhhCC----CCHHHHHHHHHHHHHhhC----CchhHHHHHHcCCHHHHH----HHHccCCCHHHHHHHHHHHHHhh
Q 006114 410 PKILQLLTS----EDPDVQIHAVKVVANLAA----EDINQEKIVEEGGLDALL----LLLRTSQNTTILRVASGAIANLA 477 (660)
Q Consensus 410 ~~LV~LL~s----~d~~vr~~Aa~aL~nLa~----~~en~~~Ive~GgI~~Lv----~LL~~s~d~~v~~~Aa~AL~nLA 477 (660)
..+..++.+ .++.++..|.-++++++. +...+ ....|+.+. ..+. ..+..-+..+..+|+|+.
T Consensus 394 ~~~~~l~~~~~~~~~~~l~~ta~La~gslV~k~c~~~~~c----~~~~v~~i~~~l~~~~~-~~~~~~~~~~LkaLGN~g 468 (1056)
T 1lsh_A 394 SYARELLNTSFIRNRPILRKTAVLGYGSLVFRYCANTVSC----PDELLQPLHDLLSQSSD-RAKEEEIVLALKALGNAG 468 (1056)
T ss_dssp HHHHHHHTCHHHHTCHHHHHHHHHHHHHHHHHHHTTCSSC----CGGGTHHHHHHHHHHHH-TTCHHHHHHHHHHHHHHT
T ss_pred HHHHHHHhCcccccCHHHHHHHHHHHHHHHHHHhccCCCC----CHHHHHHHHHHHHHHHh-cCChHHHHHHHHHhhccC
Confidence 334455544 355666666666666543 21111 111244444 4444 446667778999999984
Q ss_pred cCchhHHHHHhcCccHHHHHhhcC------CCCHHHHHHHHHHHHHHhcC-hhHHHHHHhccHHHHHHHHh--cCCCHHH
Q 006114 478 MNEMNQGLIMSRGGGQLLAKTASK------TDDPQTLRMVAGALANLCGN-EKLHTMLEEDGAIKALLAMV--RSGNIDV 548 (660)
Q Consensus 478 ~~~~n~~~Ive~g~I~~Ll~LL~~------s~d~~v~~~Aa~aLanLa~~-~~~r~~iv~~G~V~~Lv~lL--~s~~~~v 548 (660)
. |. .++.|..++.. +....++..|++||..++.. |. .+-+.++.+. ...++++
T Consensus 469 ~-p~---------~l~~l~~~l~~~~~~~~~~~~rvr~aAi~ALr~~~~~~p~--------~v~~il~~i~~n~~e~~Ev 530 (1056)
T 1lsh_A 469 Q-PN---------SIKKIQRFLPGQGKSLDEYSTRVQAEAIMALRNIAKRDPR--------KVQEIVLPIFLNVAIKSEL 530 (1056)
T ss_dssp C-GG---------GHHHHHTTSTTSSSCCCCSCHHHHHHHHHTTTTGGGTCHH--------HHHHHHHHHHHCTTSCHHH
T ss_pred C-hh---------HHHHHHHhhcCccccccccchHHHHHHHHHHHHhhhhchH--------HHHHHHHHHhcCCCCChHH
Confidence 3 32 56666666632 12457888899999998732 21 1334566777 4678999
Q ss_pred HHHHHHHHHHhhccchhhhhhcchhhhHHHhhcChHHHHHHhhcC-CCHHHHHHHHHHHHHhhcCC
Q 006114 549 IAQVARGLANFAKCESRAIVQGQRKGRSHLMEDSALEWLIANSKT-NSASTRRHVELALCHLAQNE 613 (660)
Q Consensus 549 ~~~Al~aLanLA~~~~~~~aq~~~e~r~~Li~~G~v~~Lv~lL~s-~d~~vr~~Aa~AL~nLa~~~ 613 (660)
+..|+.+|..-. |. ...+..+...+.. .+.+|...+...|.+++...
T Consensus 531 RiaA~~~Lm~t~---P~---------------~~~l~~ia~~l~~E~~~QV~sfv~S~l~sla~s~ 578 (1056)
T 1lsh_A 531 RIRSCIVFFESK---PS---------------VALVSMVAVRLRREPNLQVASFVYSQMRSLSRSS 578 (1056)
T ss_dssp HHHHHHHHHHTC---CC---------------HHHHHHHHHHHTTCSCHHHHHHHHHHHHHHTTCC
T ss_pred HHHHHHHHHHHC---cC---------------HHHHHHHHHHHhhCchHHHHHHHHHHHHHHHhcC
Confidence 999998885422 21 1245556666665 57888888888888887654
No 184
>3s4r_A Vimentin; alpha-helix, cytoskeleton, intermediate filament, structural; 2.45A {Homo sapiens} PDB: 3ssu_A
Probab=75.57 E-value=25 Score=29.81 Aligned_cols=59 Identities=14% Similarity=0.133 Sum_probs=38.1
Q ss_pred hhhchHHHHHHHHHHHhhhhhhHHHHhhhhhHHHHHHhhHHHHHHHHHHHHhhhhhhhhhhhhhhHHhHHHH
Q 006114 195 RSEGAEEQVDTMKKLISDNQKSIEQYEMENSTYQKALADTTQLYEKKIAELNKKLEDEHACFEGAVEQLDMV 266 (660)
Q Consensus 195 ~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 266 (660)
+--.+|.++..|+..+..++.. . -+....+|+..|++|.+++++-..--..++-+++-+
T Consensus 24 KVR~LEqqN~~Le~~i~~l~~~------~-------~~~~~~~ye~~i~~Lr~~i~~~~~ek~~l~~e~dnl 82 (93)
T 3s4r_A 24 KVRFLEQQNKILLAELEQLKGQ------G-------KSRLGDLYEEEMRELRRQVDQLTNDKARVEVERDNL 82 (93)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHH------H-------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHhhc------c-------CCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3345667777777777666621 1 123456899999999999987665555555555443
No 185
>1m1j_A Fibrinogen alpha subunit; coiled coils, disulfide rings, fibrinogen, blood clotting; HET: NDG NAG; 2.70A {Gallus gallus} SCOP: h.1.8.1 PDB: 1ei3_A
Probab=74.86 E-value=40 Score=36.49 Aligned_cols=113 Identities=14% Similarity=0.160 Sum_probs=71.0
Q ss_pred HHHHHhhHHHHHHHHHHHHhhhhhhhhhhhhhhHHhHHHHHHHhhhhhccccchhHH-HHHHHHHHHHHHHH----HhHH
Q 006114 227 YQKALADTTQLYEKKIAELNKKLEDEHACFEGAVEQLDMVKKLLSDYQNSNQGQKEV-HELCVKLKETRQLH----ESAV 301 (660)
Q Consensus 227 ~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~-~~Lk~~Le~e~~~~----e~~e 301 (660)
.+-.|-.+-+-+-+.|.+|...|.+=..-+...---...+.+++-..|+...+++-+ .++-..|++-.--. ....
T Consensus 52 LqglL~kqerdv~~rI~kLkn~L~~~s~s~~~s~~y~~~~~~~lk~~~~q~~dndn~~~e~S~eLe~ri~yIK~kVd~qi 131 (491)
T 1m1j_A 52 MQGIIDDTDQNYSQRIDNIRQQLADSQNKYKTSNRVIVETINILKPGLEGAQQLDENYGHVSTELRRRIVTLKQRVATQV 131 (491)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhhHHHHhhhhHHHHHHHHHHHHHHHHhhcchHHHHHHHHHHHHHHHHhhhccchhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 445556666666677777777777666666666666667777777777776666655 44444444332222 2222
Q ss_pred HHHHHHHHHHHHHHHhhhhccHHHHHHHHHHHHHHHHhhhhHHHHHHHHhhCCCCCCcc
Q 006114 302 YEVQTLKSEYKNLLEEKETMSDELQAARQRLLVEEKQRKAIEYELVKLKKTAPEHDDDF 360 (660)
Q Consensus 302 ~E~~~lks~l~~l~~~~~~~~eel~~~~k~l~~e~~~rkkLe~E~~~l~~~l~~~~~~~ 360 (660)
+.|+ .++..+++-..+-++||..++.-+..|..+|...
T Consensus 132 ~~Ir---------------------vLq~~l~~q~skIQRLE~dI~~q~~~Cr~pC~r~ 169 (491)
T 1m1j_A 132 NRIK---------------------ALQNSIQEQVVEMKRLEVDIDIKIRACKGSCARS 169 (491)
T ss_dssp HHHH---------------------HHHHHHHHHHHHHHHHHHHHHHHHHTTTTTBSSC
T ss_pred HHHH---------------------HHHHHHHHHHHHHHHHHHHHHHHHHHhcchhhhh
Confidence 2223 3444455555555889999999999999988776
No 186
>2z5i_A TM, general control protein GCN4 and tropomyosin alpha-1 chain; coiled coil, actin, troponin, cytoskeleton, cardiomyopathy; 2.10A {Saccharomyces cerevisiae} PDB: 2z5h_A 1kql_A 1mv4_A 2g9j_C
Probab=73.54 E-value=5.9 Score=30.14 Aligned_cols=42 Identities=29% Similarity=0.307 Sum_probs=36.8
Q ss_pred hhhhhhHHHHhhhhHHHHHHHHHhhhhhhhhhhhhHHHHHHH
Q 006114 108 LVTRSEFLEKENAHLELEVEKILGELNHQKDQNNLKREKIVQ 149 (660)
Q Consensus 108 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 149 (660)
|-+|-||.++.-..|+.+|++|-.++-..|.....+++.+.+
T Consensus 3 ~~~~aefAERsV~KLek~ID~LEdeL~~eKek~~~i~~eLD~ 44 (52)
T 2z5i_A 3 LLSKNYHLENEVARLKKLVDDLEDELYAQKLKYKAISEELDH 44 (52)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHH
Confidence 568899999999999999999999999998888777776655
No 187
>3a6p_A Exportin-5; exportin-5, RANGTP, nuclearexport, importin-BE family, nucleus, phosphoprotein, protein transport; HET: GTP; 2.92A {Homo sapiens}
Probab=73.45 E-value=69 Score=39.08 Aligned_cols=127 Identities=9% Similarity=0.016 Sum_probs=80.8
Q ss_pred CHHHHHHHHHHHHHhhCCchhHHHHHHcCCHHHHHHHHc-cCCCHHHHHHHHHHHHHhhcC-----chhHHHHHhcCccH
Q 006114 420 DPDVQIHAVKVVANLAAEDINQEKIVEEGGLDALLLLLR-TSQNTTILRVASGAIANLAMN-----EMNQGLIMSRGGGQ 493 (660)
Q Consensus 420 d~~vr~~Aa~aL~nLa~~~en~~~Ive~GgI~~Lv~LL~-~s~d~~v~~~Aa~AL~nLA~~-----~~n~~~Ive~g~I~ 493 (660)
+...|..|-..|..+..++ ++...+...|. .+.++.++..|+..|.+.... +......+....+.
T Consensus 26 ~~~~r~~Ae~~L~~~~~~p---------~~~~~~~~~L~~~s~~~~vR~~A~~~Lk~~I~~~W~~l~~e~k~~Ir~~ll~ 96 (1204)
T 3a6p_A 26 TQRYRLEALKFCEEFKEKC---------PICVPCGLRLAEKTQVAIVRHFGLQILEHVVKFRWNGMSRLEKVYLKNSVME 96 (1204)
T ss_dssp CHHHHHHHHHHHHHHHHHC---------TTHHHHHHHHTSTTSCHHHHHHHHHHHHHHHHHSGGGSCHHHHHHHHHHHHH
T ss_pred ChHHHHHHHHHHHHHHhCc---------hHHHHHHHHHHccCCCHHHHHHHHHHHHHHHHHhcccCCHHHHHHHHHHHHH
Confidence 6778888888886553332 35555555553 466889999999999987532 33333334444555
Q ss_pred HHHHhhcCC--CCHHHHHHHHHHHHHHhc--ChhHHHHHHhccHHHHHHHHhcCCCHHHHHHHHHHHHHhhc
Q 006114 494 LLAKTASKT--DDPQTLRMVAGALANLCG--NEKLHTMLEEDGAIKALLAMVRSGNIDVIAQVARGLANFAK 561 (660)
Q Consensus 494 ~Ll~LL~~s--~d~~v~~~Aa~aLanLa~--~~~~r~~iv~~G~V~~Lv~lL~s~~~~v~~~Al~aLanLA~ 561 (660)
.+....... .++.++...+.+|+.++. .|.. -.+.++.|+.++.+ ++..+..++.+|..|+.
T Consensus 97 ~l~~~~~~~~~~~~~vr~kla~~la~Ia~~d~p~~-----Wp~ll~~L~~~~~~-~~~~~e~~L~iL~~L~E 162 (1204)
T 3a6p_A 97 LIANGTLNILEEENHIKDALSRIVVEMIKREWPQH-----WPDMLIELDTLSKQ-GETQTELVMFILLRLAE 162 (1204)
T ss_dssp HHHHSSCCTTSSCHHHHHHHHHHHHHHHHHHSTTT-----CTTHHHHHHHHHHT-CHHHHHHHHHHHHHHHH
T ss_pred HHHhhccccccccHHHHHHHHHHHHHHHHHhCccc-----chHHHHHHHHHhcC-CHHHHHHHHHHHHHHHH
Confidence 544432111 357788888888888873 2311 23678888888866 56667778888888763
No 188
>1deq_A Fibrinogen (alpha chain); coiled-coil, blood clotting; 3.50A {Bos taurus} SCOP: i.9.1.1
Probab=73.33 E-value=34 Score=36.19 Aligned_cols=75 Identities=12% Similarity=0.226 Sum_probs=55.1
Q ss_pred HHHHhhHHHHHHHHHHHHHHHHHHhhhhchHHHHHHHHHHHhhhhhhHHHHhhhhhHHHHHHhhHHHHHHHHHHHHhhhh
Q 006114 170 VLADTTQMYEKKITELIKQLEIEHARSEGAEEQVDTMKKLISDNQKSIEQYEMENSTYQKALADTTQLYEKKIAELNKKL 249 (660)
Q Consensus 170 ~~~~~~~~~~~~~~~l~~~l~~e~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~ 249 (660)
.|.++.+.+...|.+|+..|.+-...++...--+..+...+.+-++ ....+..++...+.-.|++|.-|.+++
T Consensus 57 ~Ldk~er~~~~rIe~L~~~L~~~s~s~~~~~~y~~~~~~~lk~~~~-------q~~dndn~~~e~s~eLe~~i~~lk~~V 129 (390)
T 1deq_A 57 LIDEVDQDFTSRINKLRDSLFNYQKNSKDSNTLTKNIVELMRGDFA-------KANNNDNTFKQINEDLRSRIEILRRKV 129 (390)
T ss_pred HHHHhhhhHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHH-------hhccchHHHHHHHHHHHHHHHHHHHHH
Confidence 5677778888899999999888887777777777777777777773 333344455555667778888888877
Q ss_pred hh
Q 006114 250 ED 251 (660)
Q Consensus 250 ~~ 251 (660)
.+
T Consensus 130 ~~ 131 (390)
T 1deq_A 130 IE 131 (390)
T ss_pred HH
Confidence 74
No 189
>3gae_A Protein DOA1; UFD3, CDC48, armadillo repeat, nucleus, phosphoprotein, UBL conjugation pathway, WD repeat, nuclear protein; 1.60A {Saccharomyces cerevisiae}
Probab=70.79 E-value=18 Score=36.24 Aligned_cols=101 Identities=16% Similarity=0.182 Sum_probs=65.5
Q ss_pred CCCHHHHHHHHHHHHHHhcChh-HHHHHHhccHHHHHHHHhc--------CCCHHHHHHHHHHHHHhhccchhhhhhcch
Q 006114 502 TDDPQTLRMVAGALANLCGNEK-LHTMLEEDGAIKALLAMVR--------SGNIDVIAQVARGLANFAKCESRAIVQGQR 572 (660)
Q Consensus 502 s~d~~v~~~Aa~aLanLa~~~~-~r~~iv~~G~V~~Lv~lL~--------s~~~~v~~~Al~aLanLA~~~~~~~aq~~~ 572 (660)
+.+|..+-.++.+++|+..++. ++..+........++..+. +.+..++..++..+.|++...-.
T Consensus 101 ~~~~~~~ml~lR~l~NlF~~~~~g~~l~~~~~~~~~i~~~i~~~~~~~~~~~~~nl~iA~ATl~~N~av~~~~------- 173 (253)
T 3gae_A 101 NKNITLTMLTVRILVNCFNNENWGVKLLESNQVYKSIFETIDTEFSQASAKQSQNLAIAVSTLIFNYSALVTK------- 173 (253)
T ss_dssp CSSHHHHHHHHHHHHHHTTCTTTHHHHHTSHHHHTTHHHHSCSCCTTCCHHHHHHHHHHHHHHHHHHHHHHHT-------
T ss_pred CCchhHHHHHHHHHHHcccCCchHHHHHhcchhHHHHHHHHHHHhhhcccCCchhHHHHHHHHHHHHHHHHhh-------
Confidence 4577788889999999998888 7777765544555555542 13677888899999999853110
Q ss_pred hhhHHHhhcChHHHHHHhhcC---------CCHHHHHHHHHHHHHhhcCC
Q 006114 573 KGRSHLMEDSALEWLIANSKT---------NSASTRRHVELALCHLAQNE 613 (660)
Q Consensus 573 e~r~~Li~~G~v~~Lv~lL~s---------~d~~vr~~Aa~AL~nLa~~~ 613 (660)
. +. +...+..++.++.. .|+...-.+..||++|...+
T Consensus 174 ~-~~---~~e~~~~l~~~i~~~~~~~e~~~~d~Ea~yR~LvAlGtL~~~~ 219 (253)
T 3gae_A 174 G-NS---DLELLPIVADAINTKYGPLEEYQECEEAAYRLTVAYGNLATVE 219 (253)
T ss_dssp S-CS---CTTHHHHHHHHHHTTTTTSHHHHHSHHHHHHHHHHHHHHHHHS
T ss_pred c-cc---hHHHHHHHHHHHHHHhcccccccCCHHHHHHHHHHHHHHHhCc
Confidence 0 00 12234445554442 36677777888888887533
No 190
>3mq9_A Bone marrow stromal antigen 2 fused to maltose-BI periplasmic protein; HIV, antiviral protein; 2.80A {Escherichia coli}
Probab=70.08 E-value=60 Score=34.88 Aligned_cols=69 Identities=13% Similarity=0.167 Sum_probs=35.4
Q ss_pred HHHhhHHHHHHHHHHHHHHHHHHhhhhchHHHHHHHHHHHhhhhhhHHHHhhhhhHHHHHHhhHHHHHHHHHH
Q 006114 171 LADTTQMYEKKITELIKQLEIEHARSEGAEEQVDTMKKLISDNQKSIEQYEMENSTYQKALADTTQLYEKKIA 243 (660)
Q Consensus 171 ~~~~~~~~~~~~~~l~~~l~~e~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ 243 (660)
..+..+...++|.++++.+-.+. .+++-...|+++|.+.|+.+.|.++.-+++..+.--...+.|||.+
T Consensus 371 ~eeal~~~~~~i~~~l~~~~~~~----e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 439 (471)
T 3mq9_A 371 VDEALKDAQTRITAARDGLRAVM----EARNVTHLLQQELTEAQKGFQDVEAQAATANHTVMALMASLDAEKA 439 (471)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHhhHHHH----HhhhHHHHHHHHHHHHhhhHHHHHHHhhhcchhHHHHHHHHHHHHH
Confidence 33444444444444444443332 2234555677777777777776666655555544433333444433
No 191
>3mov_A Lamin-B1; LMNB1, B-type lamins, intermediate filament (IF), nucleus, coiled coil, structural genomics consortium, SGC, structural protein; 2.40A {Homo sapiens} PDB: 3tyy_A
Probab=69.67 E-value=15 Score=31.35 Aligned_cols=73 Identities=18% Similarity=0.134 Sum_probs=46.9
Q ss_pred hchHHHHHHHHHHHhhHHHHHHhhhhhhhHHHHhhhhHHHHHHHHHhhhhhhhhhhhhHHHHHHHHHHHhhhhhhhhhhh
Q 006114 85 NDKYEFEKQLRESQISYDESMRNLVTRSEFLEKENAHLELEVEKILGELNHQKDQNNLKREKIVQLEISLKNSKQQQLDN 164 (660)
Q Consensus 85 ~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 164 (660)
+.+..||+.|++.+..|+..+..+... ..+|+.++.+++.++..|..
T Consensus 19 ~~~~~LE~~l~e~E~~~~~e~~~~q~~-------i~~lE~eL~~~r~e~~~ql~-------------------------- 65 (95)
T 3mov_A 19 KESRACLERIQELEDLLAKEKDNSRRM-------LTDKEREMAEIRDQMQQQLN-------------------------- 65 (95)
T ss_dssp CCCHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHH--------------------------
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHH--------------------------
Confidence 346778888888888888776555544 34455555555555444321
Q ss_pred hhhHHHHHHhhHHHHHHHHHHHHHHHHH
Q 006114 165 SSYQKVLADTTQMYEKKITELIKQLEIE 192 (660)
Q Consensus 165 ~~~~~~~~~~~~~~~~~~~~l~~~l~~e 192 (660)
-++.|-+.+..++.||+--.+.|+.|
T Consensus 66 --EYq~LlnvKl~Le~EIatYrkLLEGE 91 (95)
T 3mov_A 66 --DYEQLLDVKLALDMEISAYRKLLEGE 91 (95)
T ss_dssp --HHHHHHHHHHHHHHHHHHHHHHHCCC
T ss_pred --HHHHHHHHHHHHHHHHHHHHHHHccC
Confidence 23455566677788888888888654
No 192
>3vp9_A General transcriptional corepressor TUP1; four helix bundle; 1.80A {Saccharomyces cerevisiae} PDB: 3vp8_A
Probab=66.12 E-value=15 Score=31.33 Aligned_cols=75 Identities=17% Similarity=0.206 Sum_probs=51.5
Q ss_pred HHHHHHhhhhhhhHHHHhhhhHHHHHH-HHHhhhhhhhhhhhhHHHHHHHHHHHhhhhhhhhhhhhhhHHHHHHhhHHHH
Q 006114 101 YDESMRNLVTRSEFLEKENAHLELEVE-KILGELNHQKDQNNLKREKIVQLEISLKNSKQQQLDNSSYQKVLADTTQMYE 179 (660)
Q Consensus 101 ~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 179 (660)
..|.+..++.-|+++..|...+...-. +.-..+++|-..-..++..+-+||..-... .+.||
T Consensus 12 l~ELLD~ir~Efe~~~~e~~~~k~q~~~eyE~ki~~Qi~Emq~Ir~tvyeLE~~h~km-----------------Kq~YE 74 (92)
T 3vp9_A 12 LNELLDAIRQEFLQVSQEANTYRLQNQKDYDFKMNQQLAEMQQIRNTVYERELTHRKM-----------------KDAYE 74 (92)
T ss_dssp -----CCTTTTTTTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----------------HHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----------------HHHHH
Confidence 345566677777888888777765543 666668888888888888888886654444 45688
Q ss_pred HHHHHHHHHHHHH
Q 006114 180 KKITELIKQLEIE 192 (660)
Q Consensus 180 ~~~~~l~~~l~~e 192 (660)
.||..|+.+|+..
T Consensus 75 eEI~rLr~eLe~r 87 (92)
T 3vp9_A 75 EEIKHLKLGLEQR 87 (92)
T ss_dssp HHHHHHHHHHTC-
T ss_pred HHHHHHHHHHHHc
Confidence 9999999998753
No 193
>3pst_A Protein DOA1; protein degradation, CDC48, ubiquitin, nuclear protein; 2.00A {Saccharomyces cerevisiae} PDB: 3psp_A
Probab=66.09 E-value=48 Score=35.84 Aligned_cols=102 Identities=12% Similarity=0.061 Sum_probs=66.3
Q ss_pred CCCHHHHHHHHHHHHHhhcCchhHHHHHh-cCccHHHHHhhcC----C---CCHHHHHHHHHHHHHHhcC-hhHHHHHHh
Q 006114 460 SQNTTILRVASGAIANLAMNEMNQGLIMS-RGGGQLLAKTASK----T---DDPQTLRMVAGALANLCGN-EKLHTMLEE 530 (660)
Q Consensus 460 s~d~~v~~~Aa~AL~nLA~~~~n~~~Ive-~g~I~~Ll~LL~~----s---~d~~v~~~Aa~aLanLa~~-~~~r~~iv~ 530 (660)
+..+..+-.++++++||..++.....++. ......++..+.. . .+..++..++..+.|++.. ...+. .
T Consensus 273 ~~~~an~MltlR~laNlF~~~~~g~~ll~~~~~~~~i~~~i~~~l~~~~~~~nkNl~IA~ATLllNlAv~~~~~~~---~ 349 (425)
T 3pst_A 273 NKNITLTMLTVRILVNCFNNENWGVKLLESNQVYKSIFETIDTEFSQASAKQSQNLAIAVSTLIFNYSALVTKGNS---D 349 (425)
T ss_dssp CSSHHHHHHHHHHHHHHTTCTTTHHHHHTSHHHHHHHHHHSCCCCTTCCHHHHHHHHHHHHHHHHHHHHHHHHSCS---C
T ss_pred CCChhHHHHHHHHHHHhcCCcchHHHHhhCchhHHHHHHHHHHHhhhcccCCCchHHHHHHHHHHHHHHHHhcccc---h
Confidence 45778888899999999999885444443 3234445554421 1 2456788888899999831 10000 1
Q ss_pred ccHHHHHHHHhc---------CCCHHHHHHHHHHHHHhhccch
Q 006114 531 DGAIKALLAMVR---------SGNIDVIAQVARGLANFAKCES 564 (660)
Q Consensus 531 ~G~V~~Lv~lL~---------s~~~~v~~~Al~aLanLA~~~~ 564 (660)
...++.++.++. ..++++...++.|||+|+..++
T Consensus 350 ~el~~~l~e~l~~~~g~~E~~~~d~EA~yRlLVALGtLv~~~~ 392 (425)
T 3pst_A 350 LELLPIVADAINTKYGPLEEYQECEEAAYRLTVAYGNLATVEP 392 (425)
T ss_dssp TTHHHHHHHHHHHTTTTSHHHHTSHHHHHHHHHHHHHHHHHCH
T ss_pred HHHHHHHHHHHHhhccccccccCCHHHHHHHHHHHHHHHhcCH
Confidence 234455666655 2588999999999999996543
No 194
>3bas_A Myosin heavy chain, striated muscle/general control protein GCN4 chimera; alpha-helical coiled coil, disorder, salt links; 2.30A {Argopecten irradians} SCOP: h.1.26.1 PDB: 1nkn_A 3bat_A
Probab=65.39 E-value=55 Score=27.37 Aligned_cols=43 Identities=16% Similarity=0.097 Sum_probs=36.9
Q ss_pred HHhhHHHHHHHHHHHHHHHHHHhhhhchHHHHHHHHHHHhhhh
Q 006114 172 ADTTQMYEKKITELIKQLEIEHARSEGAEEQVDTMKKLISDNQ 214 (660)
Q Consensus 172 ~~~~~~~~~~~~~l~~~l~~e~~~~~~~~~~~~~l~~~l~~~~ 214 (660)
..+....+.++..+...|+.+...+..+++....|-..-.+++
T Consensus 13 eeEm~~~eeel~~lke~l~k~e~~rkele~~~~~l~~ek~~L~ 55 (89)
T 3bas_A 13 EEEMKEQLKQMDKMKEDLAKTERIKKELEEQNVTLLEQKNDLF 55 (89)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4566678889999999999999999999999888888888887
No 195
>3ghg_A Fibrinogen alpha chain; triple-stranded coiled coil, beta sheets, alpha helices, AMY amyloidosis, blood coagulation, disease mutation, glycoprot phosphoprotein; HET: NAG NDG BMA MAN GAL SIA; 2.90A {Homo sapiens} PDB: 3h32_A* 2a45_G*
Probab=64.62 E-value=48 Score=36.55 Aligned_cols=45 Identities=9% Similarity=0.226 Sum_probs=28.4
Q ss_pred HHHHhhHHHHHHHHHHHHHHHHHHhhhhchHHHHHHHHHHHhhhh
Q 006114 170 VLADTTQMYEKKITELIKQLEIEHARSEGAEEQVDTMKKLISDNQ 214 (660)
Q Consensus 170 ~~~~~~~~~~~~~~~l~~~l~~e~~~~~~~~~~~~~l~~~l~~~~ 214 (660)
.|-++.+++-+.|.+|+++|++=...++.++.-...+...|..-+
T Consensus 54 lLdkqErDltkrINELKnqLEdlsKnsKdseqy~k~~~E~Lr~rq 98 (562)
T 3ghg_A 54 LIDEVNQDFTNRINKLKNSLFEYQKNNKDSHSLTTNIMEILRGDF 98 (562)
T ss_dssp HHHHHHHHHHHHHHHHHHHHTHHHHHHHHHHHHHHHHHHTTSSHH
T ss_pred hHHhhcCcHHHHHHHHHHHHHHHHhhchhHHHHHHHHHHHHHHHH
Confidence 345566677777777777777766555666655555555554444
No 196
>3mxz_A Tubulin-specific chaperone A; helix bundle; 1.60A {Arabidopsis thaliana}
Probab=64.39 E-value=63 Score=28.53 Aligned_cols=95 Identities=13% Similarity=0.197 Sum_probs=58.0
Q ss_pred HHHHhhHHHHHHHHHHHHHHHHHHhhhhchHHHHHHHHHHHhhhhhhHHHHhhhhhHHHHHHhhHHHHHHHHHHHHhhhh
Q 006114 170 VLADTTQMYEKKITELIKQLEIEHARSEGAEEQVDTMKKLISDNQKSIEQYEMENSTYQKALADTTQLYEKKIAELNKKL 249 (660)
Q Consensus 170 ~~~~~~~~~~~~~~~l~~~l~~e~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~ 249 (660)
-|.++...|++|+.+-...++.=++. ..-+-.+.+-+..|.+++ .+|-|+.+-.+.-+..|..-|
T Consensus 19 RL~KE~~~Y~kE~~~q~~kiekmk~e-~~dey~iKkq~evL~Et~--------------~mipd~~~RL~~a~~~L~~~l 83 (116)
T 3mxz_A 19 RIVKELHSYEKEVEREAAKTADMKDK-GADPYDLKQQENVLGESR--------------MMIPDCHKRLESALADLKSTL 83 (116)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHT-TCCHHHHHHHHHHHHHHH--------------HHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhc-cCCHHHHHHHHHHHHHHH--------------HHhHHHHHHHHHHHHHHHHHH
Confidence 46677777888777766666554432 112233333333444444 566777777778888888888
Q ss_pred hhhhhhhhhhHHhHHHHHHHhhhhhccccc
Q 006114 250 EDEHACFEGAVEQLDMVKKLLSDYQNSNQG 279 (660)
Q Consensus 250 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 279 (660)
+.....-..-.+++..++..|.+.+.....
T Consensus 84 ~~~~~~~~~~~ee~~~Ak~~l~~ae~~~~~ 113 (116)
T 3mxz_A 84 AELEETDEKEGPEIEDAKKTVADVEKQFPT 113 (116)
T ss_dssp HHHHTC-CCCCHHHHHHHHHHHHHHTC---
T ss_pred HHhcccCCCChHHHHHHHHHHHHHHHhccC
Confidence 754333334467888999999888876543
No 197
>3hnw_A Uncharacterized protein; coiled-coil, structural genomics, PSI-2, protein structure initiative, midwest center for structural genomics, MCSG; 2.20A {Eubacterium eligens}
Probab=64.39 E-value=45 Score=30.36 Aligned_cols=66 Identities=17% Similarity=0.079 Sum_probs=39.8
Q ss_pred HHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHhhhhccHHHHHHHHHHHHHHHHhhhhHHHHH
Q 006114 282 EVHELCVKLKETRQLHESAVYEVQTLKSEYKNLLEEKETMSDELQAARQRLLVEEKQRKAIEYELV 347 (660)
Q Consensus 282 e~~~Lk~~Le~e~~~~e~~e~E~~~lks~l~~l~~~~~~~~eel~~~~k~l~~e~~~rkkLe~E~~ 347 (660)
|...++..++...++.+..+.|+..||.++..++........++..+++.+.....+-.+++.++.
T Consensus 69 El~k~~~~~~~L~~~l~~~~kE~~~lK~el~~~~~k~e~~~~e~~~l~~~~~~l~~~~~~le~~~~ 134 (138)
T 3hnw_A 69 DYFKAKKMADSLSLDIENKDKEIYDLKHELIAAQIKAESSAKEIKELKSEINKYQKNIVKLETELN 134 (138)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344555555555566666677777777777766666666666666666665555555555555543
No 198
>3g2s_A C-terminal fragment of sortilin-related receptor; ADP-ribosylation factor binding protein GGA1, VHS, acidic- cluster dileucine signal, sorla; 1.70A {Homo sapiens} SCOP: a.118.9.2 PDB: 3g2t_A* 3g2u_A 3g2v_A* 3g2w_A 1ujk_A* 1jwf_A 1ujj_A 1jwg_A* 1py1_A*
Probab=63.68 E-value=10 Score=35.01 Aligned_cols=70 Identities=10% Similarity=-0.100 Sum_probs=58.1
Q ss_pred CHHHHHHHHccCCCHHHHHHHHHHHHHhhcC--chhHHHHHhcCccHHHHHhhcC-----CCCHHHHHHHHHHHHHHh
Q 006114 449 GLDALLLLLRTSQNTTILRVASGAIANLAMN--EMNQGLIMSRGGGQLLAKTASK-----TDDPQTLRMVAGALANLC 519 (660)
Q Consensus 449 gI~~Lv~LL~~s~d~~v~~~Aa~AL~nLA~~--~~n~~~Ive~g~I~~Ll~LL~~-----s~d~~v~~~Aa~aLanLa 519 (660)
++..|..-|. +.++.++..|+.+|-.+..+ +.+...|.....+..|+.++.. ..++.|+..++..|..++
T Consensus 49 a~ral~krl~-~~n~~v~l~AL~LLe~cvkNCG~~fh~eias~~Fl~eL~kl~~~k~~~~~~~~~Vk~kil~li~~W~ 125 (149)
T 3g2s_A 49 ATRLLAHKIQ-SPQEWEAIQALTVLETCMKSCGKRFHDEVGKFRFLNELIKVVSPKYLGSRTSEKVKNKILELLYSWT 125 (149)
T ss_dssp HHHHHHHHHT-CSSHHHHHHHHHHHHHHHHHCCHHHHHHHTSHHHHHHHHHHHCTTTTGGGSCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHc-CCCHHHHHHHHHHHHHHHHhcCHHHHHHHhhHHHHHHHHHHHcccccCCCCCHHHHHHHHHHHHHHH
Confidence 4677788887 78999999999998888765 6778888888889999999863 257899999999998887
No 199
>3hnw_A Uncharacterized protein; coiled-coil, structural genomics, PSI-2, protein structure initiative, midwest center for structural genomics, MCSG; 2.20A {Eubacterium eligens}
Probab=62.65 E-value=31 Score=31.42 Aligned_cols=25 Identities=20% Similarity=0.236 Sum_probs=10.1
Q ss_pred HHHhhHHHHHHHHHHHHHHHHHHhh
Q 006114 171 LADTTQMYEKKITELIKQLEIEHAR 195 (660)
Q Consensus 171 ~~~~~~~~~~~~~~l~~~l~~e~~~ 195 (660)
+...+..++++|..|+.+|..-.-.
T Consensus 80 L~~~l~~~~kE~~~lK~el~~~~~k 104 (138)
T 3hnw_A 80 LSLDIENKDKEIYDLKHELIAAQIK 104 (138)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3333344444444444444333333
No 200
>3u1c_A Tropomyosin alpha-1 chain; anti-parallel coiled coil, contractIle protein; 1.80A {Gallus gallus} PDB: 3u1a_A
Probab=62.18 E-value=75 Score=27.18 Aligned_cols=88 Identities=17% Similarity=0.217 Sum_probs=51.2
Q ss_pred HHHHHHHHHHhhhhhhhhhhhhhhHHhHHHHHHHhhhhhccccchhHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHH
Q 006114 236 QLYEKKIAELNKKLEDEHACFEGAVEQLDMVKKLLSDYQNSNQGQKEVHELCVKLKETRQLHESAVYEVQTLKSEYKNLL 315 (660)
Q Consensus 236 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~Lk~~Le~e~~~~e~~e~E~~~lks~l~~l~ 315 (660)
...-+||.-|.-..++-..|.+.++.++.. .-.....+++||..|+..+..+-
T Consensus 5 daIKkKm~~lk~e~e~a~drae~~e~~~k~---------------------------~e~~~~~~E~Ei~sL~kk~~~lE 57 (101)
T 3u1c_A 5 DAIKKKMQMLKLDKENALDRAEQAEADKKA---------------------------AEERSKQLEDDIVQLEKQLRVTE 57 (101)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---------------------------HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---------------------------HHHHHHHhHHHHHHHHHHHHHHH
Confidence 334466666666666555555555444433 34455666677777776666555
Q ss_pred HhhhhccHHHHHHHHHHHHHHHHhhhhHHHHHHHH
Q 006114 316 EEKETMSDELQAARQRLLVEEKQRKAIEYELVKLK 350 (660)
Q Consensus 316 ~~~~~~~eel~~~~k~l~~e~~~rkkLe~E~~~l~ 350 (660)
..-+...+.+......+..........+.+.+.+.
T Consensus 58 ~eld~~ee~L~ea~~kLee~ek~~~~aE~ev~~L~ 92 (101)
T 3u1c_A 58 DSRDQVLEELHKSEDSLLFAEENAAKAESEVASLN 92 (101)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 55555555555566666666555555566666554
No 201
>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=62.12 E-value=1.2e+02 Score=32.50 Aligned_cols=22 Identities=23% Similarity=0.048 Sum_probs=9.6
Q ss_pred HHHHhhHHHHHHHHHHHHHHHH
Q 006114 170 VLADTTQMYEKKITELIKQLEI 191 (660)
Q Consensus 170 ~~~~~~~~~~~~~~~l~~~l~~ 191 (660)
.+..++.+++++|.++.+++++
T Consensus 446 ~~~~~~~~~~~~~~~~~~~~~~ 467 (487)
T 3oja_A 446 QLAEENARLKKLNGEADLALAS 467 (487)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHhhhhhhhhhhhhhhhHh
Confidence 3344444444444444444433
No 202
>4fi5_A Nucleoprotein; structural genomics, niaid, national institute of allergy AN infectious diseases; 2.20A {Hantaan virus}
Probab=61.64 E-value=24 Score=30.93 Aligned_cols=22 Identities=32% Similarity=0.394 Sum_probs=17.2
Q ss_pred HHHHHHHHHHHHhhhhhhhhhh
Q 006114 234 TTQLYEKKIAELNKKLEDEHAC 255 (660)
Q Consensus 234 ~~~~~~~~~~~~~~~~~~~~~~ 255 (660)
+-..|+.||++|..+|.|-.++
T Consensus 70 ~Vs~lq~KiaeLKrqLAd~va~ 91 (113)
T 4fi5_A 70 VAVSIQAKIDELKRQLADRIAT 91 (113)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHHHHHHHHHh
Confidence 4457899999999999876663
No 203
>2k48_A Nucleoprotein; viral protein; NMR {Andes virus}
Probab=61.21 E-value=15 Score=31.79 Aligned_cols=68 Identities=24% Similarity=0.299 Sum_probs=35.6
Q ss_pred HHHHhhHHHHHHHHHHHHHHHHHHhhhhchHHHHHHHHHHHhhhhhhHHHHhhhhhHHHHHH----hhHHHHHHHHHHHH
Q 006114 170 VLADTTQMYEKKITELIKQLEIEHARSEGAEEQVDTMKKLISDNQKSIEQYEMENSTYQKAL----ADTTQLYEKKIAEL 245 (660)
Q Consensus 170 ~~~~~~~~~~~~~~~l~~~l~~e~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~l----~~~~~~~~~~~~~~ 245 (660)
+.-.+++.++.+|...-++|-.- .+.|.+.. .+++.-+...++.- ..+-..|+.||++|
T Consensus 32 ~tM~~ieeLQ~Ei~~~E~QL~iA--------------rQKLkdAe---~~~E~DPDevNK~tl~~R~~~Vsalq~KiaeL 94 (107)
T 2k48_A 32 FTMSTLQELQENITAHEQQLVTA--------------RQKLKDAE---KAVEVDPDDVNKSTLQNRRAAVSTLETKLGEL 94 (107)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHH--------------HHHHHHHH---HHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred ccHHHHHHHHHHHHHHHHHHHHH--------------HHHHHHHH---HHhcCCCcHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34445566666666555554222 22232222 34455555444432 22344588888888
Q ss_pred hhhhhhhhh
Q 006114 246 NKKLEDEHA 254 (660)
Q Consensus 246 ~~~~~~~~~ 254 (660)
.++|.|-.+
T Consensus 95 KrqLAd~va 103 (107)
T 2k48_A 95 KRQLADLVA 103 (107)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHH
Confidence 888876544
No 204
>3mq7_A Bone marrow stromal antigen 2; HIV, antiviral protein; 2.28A {Homo sapiens} PDB: 3mqc_A 3mqb_A 3mkx_A 3nwh_A 2xg7_A* 2x7a_A
Probab=60.84 E-value=45 Score=29.39 Aligned_cols=73 Identities=19% Similarity=0.225 Sum_probs=0.0
Q ss_pred hHHhHHHHHHHhhhhh-ccccchhHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHhhhhccHHHHHHHHHHHH
Q 006114 259 AVEQLDMVKKLLSDYQ-NSNQGQKEVHELCVKLKETRQLHESAVYEVQTLKSEYKNLLEEKETMSDELQAARQRLLV 334 (660)
Q Consensus 259 ~~~~~~~~~~~~~~~~-~~~~~~~e~~~Lk~~Le~e~~~~e~~e~E~~~lks~l~~l~~~~~~~~eel~~~~k~l~~ 334 (660)
++.||.+++.-|-+.. .-..++.-++.|+..|+++..+- ...+..|+.++..|.+.-.-.++|+.++++-.+.
T Consensus 30 Lq~qLTqAQe~l~~~eaQAaTCNqTV~tL~~SL~~ekaq~---q~~vqeLqgEI~~Lnq~Lq~a~ae~erlr~~~~~ 103 (121)
T 3mq7_A 30 LQQELTEAQKGFQDVEAQAATANHTVMALMASLDAEKAQG---QKKVEELEGEITTLNHKLQDASAEVERLRRENQV 103 (121)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhchh
No 205
>3l3f_X Protein DOA1, DOA1/UFD3; armadillo-like repeat structure, nucleus, UBL conjugation PA protein binding; 1.90A {Saccharomyces cerevisiae}
Probab=60.25 E-value=17 Score=38.46 Aligned_cols=101 Identities=13% Similarity=0.074 Sum_probs=64.7
Q ss_pred CCCHHHHHHHHHHHHHhhcCchhHHHHHhcC-ccHHHHHhh----cCC---CCHHHHHHHHHHHHHHhcC-hhHHHHHHh
Q 006114 460 SQNTTILRVASGAIANLAMNEMNQGLIMSRG-GGQLLAKTA----SKT---DDPQTLRMVAGALANLCGN-EKLHTMLEE 530 (660)
Q Consensus 460 s~d~~v~~~Aa~AL~nLA~~~~n~~~Ive~g-~I~~Ll~LL----~~s---~d~~v~~~Aa~aLanLa~~-~~~r~~iv~ 530 (660)
+..+..+-.++++++|+..++.....++... ....++..+ ... .+..++..++..+.|++.. ...+. .
T Consensus 210 ~~~~~n~MltlR~laNlF~~~~~g~~ll~~~~~~~~i~~~i~~~~~~~~~~~nkNl~IA~ATL~lNlAv~~~~~~~---~ 286 (362)
T 3l3f_X 210 NKNITLTMLTVRILVNCFNNENWGVKLLESNQVYKSIFETIDTEFSQASAKQSQNLAIAVSTLIFNYSALVTKGNS---D 286 (362)
T ss_dssp CSSHHHHHHHHHHHHHHTTCTTTHHHHHTSHHHHTTHHHHSCSCCSSCCHHHHHHHHHHHHHHHHHHHHHHHHTCS---C
T ss_pred CCChhHHHHHHHHHHHhccCcchHHHHHhcchhHHHHHHHHHHHhhhcccCCCchHHHHHHHHHHHHHHHHhcccc---h
Confidence 4567888889999999999988544444322 223344333 211 2456788888899999831 10000 1
Q ss_pred ccHHHHHHHHhc---------CCCHHHHHHHHHHHHHhhccc
Q 006114 531 DGAIKALLAMVR---------SGNIDVIAQVARGLANFAKCE 563 (660)
Q Consensus 531 ~G~V~~Lv~lL~---------s~~~~v~~~Al~aLanLA~~~ 563 (660)
...++.++.++. ..++++...++.+||+|+..+
T Consensus 287 ~el~~~l~~~l~~~~g~~E~~~~d~EA~yRlLVALGtL~~~~ 328 (362)
T 3l3f_X 287 LELLPIVADAINTKYGPLEEYQECEEAAYRLTVAYGNLATVE 328 (362)
T ss_dssp TTHHHHHHHHHHHTTTTSHHHHTSHHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHhhccccccccCCHHHHHHHHHHHHHHHhcC
Confidence 234455666665 358899999999999999644
No 206
>3aco_A Pacsin2, protein kinase C and casein kinase substrate in neurons protein 2; helix bundle, coiled-coil, endocytosis; 2.70A {Homo sapiens}
Probab=60.22 E-value=1.6e+02 Score=30.29 Aligned_cols=99 Identities=15% Similarity=0.219 Sum_probs=46.1
Q ss_pred HHHHHHhhHHHHHHHHHHHHHHHHH---HhhhhchHHHHHHHHHHHhhhhhhHHHHhhhhhHHHHH---HhhHHHHHHHH
Q 006114 168 QKVLADTTQMYEKKITELIKQLEIE---HARSEGAEEQVDTMKKLISDNQKSIEQYEMENSTYQKA---LADTTQLYEKK 241 (660)
Q Consensus 168 ~~~~~~~~~~~~~~~~~l~~~l~~e---~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~---l~~~~~~~~~~ 241 (660)
.+.+.+....|+..-.+...--... .+.......++..++..+...+.... .....|... ++.+++.|+..
T Consensus 156 ~~~l~KaKk~Y~~~c~e~e~a~~~~~~~~~d~~~~~k~~eK~~~k~~k~~~~~~---~a~~~Y~~~v~~~n~~~~~~~~~ 232 (350)
T 3aco_A 156 LKEVEAAKKAHHAACKEEKLAISREANSKADPSLNPEQLKKLQDKIEKCKQDVL---KTKEKYEKSLKELDQGTPQYMEN 232 (350)
T ss_dssp HHHHHHTTTTHHHHHHHHHHHHHHHTTSSSSSSCCHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHTTHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhhccCccCCHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHH
Confidence 3455566666665555432222111 11112234555656555555543222 223344444 44455667766
Q ss_pred HHHHhhhhhhhhhhhhhhH-HhHHHHHHHhhhhhcc
Q 006114 242 IAELNKKLEDEHACFEGAV-EQLDMVKKLLSDYQNS 276 (660)
Q Consensus 242 ~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~ 276 (660)
+-.+-..+.+ ++ +.+..+|..|-++...
T Consensus 233 ~~~~~~~~Q~-------lee~Rl~~lk~~l~~~~~~ 261 (350)
T 3aco_A 233 MEQVFEQCQQ-------FEEKRLRFFREVLLEVQKH 261 (350)
T ss_dssp HHHHHHHHHH-------HHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHH-------HHHHHHHHHHHHHHHHHHH
Confidence 6655554443 22 3455556555555443
No 207
>1t2k_D Cyclic-AMP-dependent transcription factor ATF-2; protein DNA complex, transcription/DNA complex; 3.00A {Homo sapiens} SCOP: h.1.3.1
Probab=59.76 E-value=17 Score=28.24 Aligned_cols=41 Identities=22% Similarity=0.213 Sum_probs=33.5
Q ss_pred HHHhhHHHHHHhhhhhhhHHHHhhhhHHHHHHHHHhhhhhh
Q 006114 96 ESQISYDESMRNLVTRSEFLEKENAHLELEVEKILGELNHQ 136 (660)
Q Consensus 96 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 136 (660)
+|+.--.+-+..|..++++|+.+|..|..+|..|..++.+=
T Consensus 15 k~R~rKk~~~~~Le~~~~~L~~~n~~L~~~i~~L~~e~~~L 55 (61)
T 1t2k_D 15 RSRQKRKVWVQSLEKKAEDLSSLNGQLQSEVTLLRNEVAQL 55 (61)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 56666666677899999999999999999999988876543
No 208
>3mq9_A Bone marrow stromal antigen 2 fused to maltose-BI periplasmic protein; HIV, antiviral protein; 2.80A {Escherichia coli}
Probab=59.57 E-value=1.1e+02 Score=32.78 Aligned_cols=47 Identities=17% Similarity=0.232 Sum_probs=33.9
Q ss_pred hHHHHHhhHHHHHHHHHHHHHHHHHhhhhchHHHHHHHHHHHhhHHHH
Q 006114 57 SYDEAKDNLVTQVELLTAKIEMQQKLRENDKYEFEKQLRESQISYDES 104 (660)
Q Consensus 57 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~ 104 (660)
+-+++.+++..+++.+..++-.+... .+-.+.|.++|.++|.+|.+.
T Consensus 370 t~eeal~~~~~~i~~~l~~~~~~~e~-~~~~~~~~~~~~~~~~~~~~~ 416 (471)
T 3mq9_A 370 TVDEALKDAQTRITAARDGLRAVMEA-RNVTHLLQQELTEAQKGFQDV 416 (471)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHHHHhhHHHHHh-hhHHHHHHHHHHHHhhhHHHH
Confidence 45666676666666666555444433 367889999999999999887
No 209
>1x5b_A Signal transducing adaptor molecule 2; VHS domain, ubiquitin binding, STAM2, structural genomics, NPPSFA; NMR {Homo sapiens} PDB: 2l0t_B
Probab=59.52 E-value=14 Score=34.50 Aligned_cols=70 Identities=10% Similarity=0.078 Sum_probs=57.5
Q ss_pred CHHHHHHHHccCCCHHHHHHHHHHHHHhhcC--chhHHHHHhcCccHHHHHhhcCCCCHHHHHHHHHHHHHHh
Q 006114 449 GLDALLLLLRTSQNTTILRVASGAIANLAMN--EMNQGLIMSRGGGQLLAKTASKTDDPQTLRMVAGALANLC 519 (660)
Q Consensus 449 gI~~Lv~LL~~s~d~~v~~~Aa~AL~nLA~~--~~n~~~Ive~g~I~~Ll~LL~~s~d~~v~~~Aa~aLanLa 519 (660)
++..|..-|. +.++.++..|+.+|-.+..+ +..+..|...+.+..|+.++....++.|+..+...|..++
T Consensus 53 A~ral~krl~-~~n~~vql~AL~LLd~~vkNcG~~Fh~evas~~Fl~el~~l~~~~~~~~Vk~kil~li~~W~ 124 (163)
T 1x5b_A 53 CLKAIMKRVN-HKVPHVALQALTLLGACVANCGKIFHLEVCSRDFATEVRAVIKNKAHPKVCEKLKSLMVEWS 124 (163)
T ss_dssp HHHHHHHHHT-CSSHHHHHHHHHHHHHHHHHTCHHHHHHHTSHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHc-CCCHHHHHHHHHHHHHHHHHhhHHHHHHHhhHHHHHHHHHHHccCCCHHHHHHHHHHHHHHH
Confidence 4667777787 78999999999988888765 6677788888888889998875578899999998888887
No 210
>3he5_A Synzip1; heterodimeric coiled-coil, de novo protein; 1.75A {Artificial gene}
Probab=59.39 E-value=23 Score=25.30 Aligned_cols=16 Identities=38% Similarity=0.526 Sum_probs=10.7
Q ss_pred hHHHHHHHHHHHHHHH
Q 006114 175 TQMYEKKITELIKQLE 190 (660)
Q Consensus 175 ~~~~~~~~~~l~~~l~ 190 (660)
+.-+|++|+.|+|.++
T Consensus 33 iaylekeianlrkkie 48 (49)
T 3he5_A 33 IAYLEKEIANLRKKIE 48 (49)
T ss_dssp HHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHHhc
Confidence 4456777777777653
No 211
>2z5i_A TM, general control protein GCN4 and tropomyosin alpha-1 chain; coiled coil, actin, troponin, cytoskeleton, cardiomyopathy; 2.10A {Saccharomyces cerevisiae} PDB: 2z5h_A 1kql_A 1mv4_A 2g9j_C
Probab=58.83 E-value=23 Score=26.84 Aligned_cols=42 Identities=17% Similarity=0.198 Sum_probs=37.6
Q ss_pred hhhHHHHHHhhHHHHHHHHHHHHHHHHHHhhhhchHHHHHHH
Q 006114 165 SSYQKVLADTTQMYEKKITELIKQLEIEHARSEGAEEQVDTM 206 (660)
Q Consensus 165 ~~~~~~~~~~~~~~~~~~~~l~~~l~~e~~~~~~~~~~~~~l 206 (660)
-+|-+|...+.+.++|+|-+|--.|..++..+..+.++++..
T Consensus 4 ~~~aefAERsV~KLek~ID~LEdeL~~eKek~~~i~~eLD~t 45 (52)
T 2z5i_A 4 LSKNYHLENEVARLKKLVDDLEDELYAQKLKYKAISEELDHA 45 (52)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHH
Confidence 577889999999999999999999999999999999888753
No 212
>1x79_B RAB GTPase binding effector protein 1; rabaptin5, GGA protein, GAT domain, intracellular trafficking, protein transport; 2.41A {Homo sapiens} SCOP: h.1.27.2
Probab=58.42 E-value=96 Score=27.23 Aligned_cols=66 Identities=14% Similarity=0.241 Sum_probs=42.5
Q ss_pred HHHHHhhHHHHHHHHHHHHHHHHHhhhhchHHHHHHHHHHHhhHHHHHHhhhhhhhHHHHhhhhHHHHHHHHHhhhh
Q 006114 58 YDEAKDNLVTQVELLTAKIEMQQKLRENDKYEFEKQLRESQISYDESMRNLVTRSEFLEKENAHLELEVEKILGELN 134 (660)
Q Consensus 58 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 134 (660)
+......=.+||..|+..+.--+.+ |.+.|..|..+-.+...+.--|...-.+.+.|+.+|-.+++
T Consensus 36 w~~k~E~~k~qV~~L~~~~q~sE~~-----------L~~Lqq~fsq~q~~vq~qL~~Lt~~Re~V~~eL~rLQ~eNd 101 (112)
T 1x79_B 36 IKQSSEDSSHQISALVLRAQASEIL-----------LEELQQGLSQAKRDVQEQMAVLMQSREQVSEELVRLQKDND 101 (112)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHH-----------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTC---------
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH-----------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcc
Confidence 3344444467999999988877555 99999999998666666666777777777777777766654
No 213
>2k48_A Nucleoprotein; viral protein; NMR {Andes virus}
Probab=58.17 E-value=42 Score=29.02 Aligned_cols=63 Identities=24% Similarity=0.272 Sum_probs=44.4
Q ss_pred hhhhHHHHhhhhhHHHHHHhhHHHHHHHHHHHHhhh-hhhhhhhhhhhHHhHHHHHHHhhhhhc
Q 006114 213 NQKSIEQYEMENSTYQKALADTTQLYEKKIAELNKK-LEDEHACFEGAVEQLDMVKKLLSDYQN 275 (660)
Q Consensus 213 ~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~ 275 (660)
+|..+.+++..-.+++..|.|.+..||+-=-+++|+ +..-.+-..+.+.-|.++|++|.|.+-
T Consensus 40 LQ~Ei~~~E~QL~iArQKLkdAe~~~E~DPDevNK~tl~~R~~~Vsalq~KiaeLKrqLAd~va 103 (107)
T 2k48_A 40 LQENITAHEQQLVTARQKLKDAEKAVEVDPDDVNKSTLQNRRAAVSTLETKLGELKRQLADLVA 103 (107)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333334455555666677888888888888888876 455556677788888888888888754
No 214
>3hhm_B NISH2 P85alpha; PI3KCA, PI3K, PIK3R1, phosphatidilynositol 3,4,5- triphosphate, wortmannin, H1047R, ATP-binding, disease mutation, kinase; HET: KWT; 2.80A {Homo sapiens} PDB: 3hiz_B 2rd0_B 4a55_B* 3mtt_A
Probab=57.98 E-value=1.1e+02 Score=32.49 Aligned_cols=123 Identities=15% Similarity=0.209 Sum_probs=60.2
Q ss_pred HHHHHHHHHHHhhhhchHHHHHHHHHHHhhhhhhHHHHhhhhhHHHHHHhhHHHHHHHHHHHHhhhhhh--hhhhhhhhH
Q 006114 183 TELIKQLEIEHARSEGAEEQVDTMKKLISDNQKSIEQYEMENSTYQKALADTTQLYEKKIAELNKKLED--EHACFEGAV 260 (660)
Q Consensus 183 ~~l~~~l~~e~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~ 260 (660)
.+..+++.+-...+..+.++.+...+.+. .+ .++..+...|..+||.+++.-.+--.+ ++-+.++-+
T Consensus 129 ~e~~~~~~~~~~~~~~~~~~~~~~~~e~~-~k----------~~a~~af~~~~~~f~~q~~~~e~~~~~~~~~~~~~~~~ 197 (373)
T 3hhm_B 129 HEYNTQFQEKSREYDRLYEEYTRTSQEIQ-MK----------RTAIEAFNETIKIFEEQCQTQERYSKEYIEKFKREGNE 197 (373)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HH----------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTTCC
T ss_pred HHHHHHHHhcccHHHHHHHHhccchHHHH-HH----------HHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhhhcCh
Confidence 33444444444445555555554443332 11 356678889999999999554432211 122333332
Q ss_pred HhHHHHHHHhhhhhccccchhHHH----HHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHhhh
Q 006114 261 EQLDMVKKLLSDYQNSNQGQKEVH----ELCVKLKETRQLHESAVYEVQTLKSEYKNLLEEKE 319 (660)
Q Consensus 261 ~~~~~~~~~~~~~~~~~~~~~e~~----~Lk~~Le~e~~~~e~~e~E~~~lks~l~~l~~~~~ 319 (660)
+ ++..++..+..++.--++|. .|...|.......--++.+++.||-++-+|...++
T Consensus 198 ~---e~~~~~~n~~~l~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~lkp~l~ql~k~rd 257 (373)
T 3hhm_B 198 K---EIQRIMHNYDKLKSRISEIIDSRRRLEEDLKKQAAEYREIDKRMNSIKPDLIQLRKTRD 257 (373)
T ss_dssp S---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred H---HHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccChHHHHHHHHHH
Confidence 2 44445555554444444442 33333333333334445555555555555444333
No 215
>3u59_A Tropomyosin beta chain; muscle contraction, actin, contractIle protein; 2.50A {Gallus gallus}
Probab=57.91 E-value=88 Score=26.62 Aligned_cols=54 Identities=26% Similarity=0.294 Sum_probs=24.4
Q ss_pred HHhHHHHHHHHHHHHHHHHHhhhhccHHHHHHHHHHHHHHHHhhhhHHHHHHHH
Q 006114 297 HESAVYEVQTLKSEYKNLLEEKETMSDELQAARQRLLVEEKQRKAIEYELVKLK 350 (660)
Q Consensus 297 ~e~~e~E~~~lks~l~~l~~~~~~~~eel~~~~k~l~~e~~~rkkLe~E~~~l~ 350 (660)
...+++|+..|+..+..+....+...+.+......+...-.....-+.+.+++.
T Consensus 39 ~~~~E~ei~sL~kKiq~lE~eld~~~e~l~~a~~kLe~~ek~~~~AE~evasLn 92 (101)
T 3u59_A 39 CKQLEEEQQGLQKKLKGTEDEVEKYSESVKEAQEKLEQAEKKATDAEAEVASLN 92 (101)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344444555555544444444443444444444444444444444444544443
No 216
>2dgc_A Protein (GCN4); basic domain, leucine zipper, DNA binding, eukaryotic regulatory protein, transcription/DNA complex; HET: DNA; 2.20A {Saccharomyces cerevisiae} SCOP: h.1.3.1 PDB: 1dgc_A* 1ld4_E 1ysa_C* 3p8m_D
Probab=57.63 E-value=16 Score=28.76 Aligned_cols=40 Identities=28% Similarity=0.281 Sum_probs=31.3
Q ss_pred HHHhhHHHHHHhhhhhhhHHHHhhhhHHHHHHHHHhhhhh
Q 006114 96 ESQISYDESMRNLVTRSEFLEKENAHLELEVEKILGELNH 135 (660)
Q Consensus 96 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 135 (660)
.|+.--.+-+..|..+.+.|..+|..|..|+..|...+.+
T Consensus 23 rsR~RK~~~~~~Le~~v~~L~~eN~~L~~ev~~Lr~~l~~ 62 (63)
T 2dgc_A 23 RSRARKLQRMKQLEDKVEELLSKNYHLENEVARLKKLVGE 62 (63)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC---
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 4555555667789999999999999999999999887753
No 217
>2ic6_A Nucleocapsid protein; hantavirus, bunyaviridae, ssRNA negative- strand viruses, antiparallel coiled coil, viral protein; 1.15A {Sin nombre virus}
Probab=57.49 E-value=21 Score=29.39 Aligned_cols=19 Identities=37% Similarity=0.485 Sum_probs=12.2
Q ss_pred HHHHHHHHHHhhhhhhhhh
Q 006114 236 QLYEKKIAELNKKLEDEHA 254 (660)
Q Consensus 236 ~~~~~~~~~~~~~~~~~~~ 254 (660)
..|+-||++|.++|.|-.+
T Consensus 55 ~~lq~Ki~elkrqlAd~va 73 (78)
T 2ic6_A 55 SALETKLGELKRELADLIA 73 (78)
T ss_dssp HHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHh
Confidence 3577777777777765443
No 218
>1jnm_A Proto-oncogene C-JUN; BZIP, protein-DNA complex, transcription/DNA complex; 2.20A {Homo sapiens} SCOP: h.1.3.1 PDB: 1fos_F 2h7h_A 1t2k_C 1a02_J* 1s9k_E 1jun_A
Probab=55.64 E-value=21 Score=27.80 Aligned_cols=42 Identities=14% Similarity=0.164 Sum_probs=35.2
Q ss_pred HHHHhhHHHHHHhhhhhhhHHHHhhhhHHHHHHHHHhhhhhh
Q 006114 95 RESQISYDESMRNLVTRSEFLEKENAHLELEVEKILGELNHQ 136 (660)
Q Consensus 95 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 136 (660)
.+|+.--.+-+..|..+++.|..+|..|..+|..|..++..=
T Consensus 14 ~k~R~rKk~~~~~Le~~v~~L~~~n~~L~~~v~~L~~e~~~L 55 (62)
T 1jnm_A 14 SKSRKRKLERIARLEEKVKTLKAQNSELASTANMLREQVAQL 55 (62)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 367776777788899999999999999999999998877543
No 219
>2wt7_A Proto-oncogene protein C-FOS; transcription, transcription regulation, nucleus, activator, repressor, DNA-binding, phosphoprotein, differentiation; 2.30A {Mus musculus} PDB: 1fos_E* 1a02_F* 1s9k_D
Probab=54.65 E-value=23 Score=27.74 Aligned_cols=42 Identities=21% Similarity=0.280 Sum_probs=34.2
Q ss_pred HHHHhhHHHHHHhhhhhhhHHHHhhhhHHHHHHHHHhhhhhh
Q 006114 95 RESQISYDESMRNLVTRSEFLEKENAHLELEVEKILGELNHQ 136 (660)
Q Consensus 95 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 136 (660)
.+|+.---+-+..|..+.+.|..+|..|..+|..|..++.+=
T Consensus 15 ~rcR~rKk~~~~~Le~~v~~L~~~n~~L~~ei~~L~~e~~~L 56 (63)
T 2wt7_A 15 AKCRNRRRELTDTLQAETDQLEDEKSALQTEIANLLKEKEKL 56 (63)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 367776677788899999999999999999998887766543
No 220
>2ic6_A Nucleocapsid protein; hantavirus, bunyaviridae, ssRNA negative- strand viruses, antiparallel coiled coil, viral protein; 1.15A {Sin nombre virus}
Probab=54.04 E-value=51 Score=27.11 Aligned_cols=57 Identities=23% Similarity=0.241 Sum_probs=42.0
Q ss_pred HHhhhhhHHHHHHhhHHHHHHHHHHHHhhh-hhhhhhhhhhhHHhHHHHHHHhhhhhc
Q 006114 219 QYEMENSTYQKALADTTQLYEKKIAELNKK-LEDEHACFEGAVEQLDMVKKLLSDYQN 275 (660)
Q Consensus 219 ~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~ 275 (660)
+++..-.+++..|.|.+..||+-=-+++|+ +..-.+-..+.+.-|.++|++|.|.+.
T Consensus 16 ~~E~QL~~A~QKLkdA~~~~e~DPDevNK~~~~~R~~~V~~lq~Ki~elkrqlAd~va 73 (78)
T 2ic6_A 16 LHEQRLVTTRQKLKDAERAVELDPDDVNKSTLQSRRAAVSALETKLGELKRELADLIA 73 (78)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 444444556666778888888877777776 556667778888889999999988764
No 221
>3qml_C Protein SLS1, nucleotide exchange factor SIL1; armadillo like repeats, chaperone-protein transport complex; 2.31A {Saccharomyces cerevisiae}
Probab=53.11 E-value=91 Score=32.25 Aligned_cols=135 Identities=11% Similarity=0.014 Sum_probs=82.0
Q ss_pred HHHHHHHHHHHHHhhCCchhHHHHHHcCCHHHHHHHHc-cCCCHHHHHHHHHHHHHhhcC-chhHHHHHh--cCccHHHH
Q 006114 421 PDVQIHAVKVVANLAAEDINQEKIVEEGGLDALLLLLR-TSQNTTILRVASGAIANLAMN-EMNQGLIMS--RGGGQLLA 496 (660)
Q Consensus 421 ~~vr~~Aa~aL~nLa~~~en~~~Ive~GgI~~Lv~LL~-~s~d~~v~~~Aa~AL~nLA~~-~~n~~~Ive--~g~I~~Ll 496 (660)
......|+-.|-.++.+-..=-.|+... .+.|-.++. ...++.+++.|+++|+..-.+ |+.-..|.. .+.+..++
T Consensus 42 ~~~le~aLD~L~ElSHDi~~G~KI~~~e-f~lL~nL~~~~~~~~~~rE~aarII~ssLRNNP~Al~~V~~~~p~fv~~lf 120 (315)
T 3qml_C 42 IARLEDSFDRIMEFAHDYKHGYKIITHE-FALLANLSLNENLPLTLRELSTRVITSCLRNNPPVVEFINESFPNFKSKIM 120 (315)
T ss_dssp HHHHHHHHHHHGGGTTSHHHHHHHHHHH-HHHHHHHHHCTTSCHHHHHHHHHHHHHHHTTCHHHHHHHHHHCTTHHHHHH
T ss_pred HHHHHHHHHHHHHhhhhHHhhhHHHhCc-HHHHHHHHhhccCChhHHHHHHHHHHHHHccCHHHHHHHHHhChhHHHHHH
Confidence 3344567777877887655555555422 334444332 245778999999999988876 665555554 33333333
Q ss_pred HhhcC------CCCHHHHHHHHHHHHHHhcChhHHHHHHhccHHHHHHHHhcCC--CHHHHHHHHHHHHHhh
Q 006114 497 KTASK------TDDPQTLRMVAGALANLCGNEKLHTMLEEDGAIKALLAMVRSG--NIDVIAQVARGLANFA 560 (660)
Q Consensus 497 ~LL~~------s~d~~v~~~Aa~aLanLa~~~~~r~~iv~~G~V~~Lv~lL~s~--~~~v~~~Al~aLanLA 560 (660)
.-|.. .....+...-+++|-.|..++. .+ ...++..|..++... ++.++..++..+..+=
T Consensus 121 ~~L~~~~~~~~~~~~~l~KR~LsII~~L~~~~~---~F-~~~~m~~L~~ly~~~~~d~~~k~Kvl~li~d~f 188 (315)
T 3qml_C 121 AALSNLNDSNHRSSNILIKRYLSILNELPVTSE---DL-PIYSTVVLQNVYERNNKDKQLQIKVLELISKIL 188 (315)
T ss_dssp HHHHHHHCC--CCCHHHHHHHHHHHHHSCCCST---TC---CCHHHHHHHHHHTTTCHHHHHHHHHHHHHHH
T ss_pred HHHHHHhhcccchhHHHHHHHHHHHHHHhcChH---hh-hhccHHHHHHHHccCCCCHHHHHHHHHHHHHHc
Confidence 33322 0233556666788888887652 12 234667777777655 8889888888777554
No 222
>3zyq_A Hepatocyte growth factor-regulated tyrosine kinas substrate; signaling; 1.48A {Homo sapiens} PDB: 4avx_A*
Probab=52.73 E-value=16 Score=35.88 Aligned_cols=70 Identities=6% Similarity=0.055 Sum_probs=58.7
Q ss_pred CHHHHHHHHccCCCHHHHHHHHHHHHHhhcC--chhHHHHHhcCccHHHHHhhcCCCCHHHHHHHHHHHHHHh
Q 006114 449 GLDALLLLLRTSQNTTILRVASGAIANLAMN--EMNQGLIMSRGGGQLLAKTASKTDDPQTLRMVAGALANLC 519 (660)
Q Consensus 449 gI~~Lv~LL~~s~d~~v~~~Aa~AL~nLA~~--~~n~~~Ive~g~I~~Ll~LL~~s~d~~v~~~Aa~aLanLa 519 (660)
++..|..-|. +.++.++..|+.+|-.+..+ +.....|.....+..|..++....++.|+..++..|..++
T Consensus 46 a~ral~krl~-~~n~~v~l~aL~LLe~~vkNcG~~f~~eias~~fl~~l~~l~~~~~~~~Vk~kil~li~~W~ 117 (226)
T 3zyq_A 46 AVNSIKKKVN-DKNPHVALYALEVMESVVKNCGQTVHDEVANKQTMEELKDLLKRQVEVNVRNKILYLIQAWA 117 (226)
T ss_dssp HHHHHHHHHT-CSSHHHHHHHHHHHHHHHHHHCHHHHHHHSSHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHc-CCCHHHHHHHHHHHHHHHHhcchHHHHhhccHHHHHHHHHHhccCCCHHHHHHHHHHHHHHH
Confidence 4677888887 78999999999999988876 6677788888888888888876678899999999888887
No 223
>3pst_A Protein DOA1; protein degradation, CDC48, ubiquitin, nuclear protein; 2.00A {Saccharomyces cerevisiae} PDB: 3psp_A
Probab=52.72 E-value=2e+02 Score=30.99 Aligned_cols=101 Identities=15% Similarity=0.186 Sum_probs=64.7
Q ss_pred CCCHHHHHHHHHHHHHHhcChhH-HHHHHhccHHHHHHHHhc--------CCCHHHHHHHHHHHHHhhccchhhhhhcch
Q 006114 502 TDDPQTLRMVAGALANLCGNEKL-HTMLEEDGAIKALLAMVR--------SGNIDVIAQVARGLANFAKCESRAIVQGQR 572 (660)
Q Consensus 502 s~d~~v~~~Aa~aLanLa~~~~~-r~~iv~~G~V~~Lv~lL~--------s~~~~v~~~Al~aLanLA~~~~~~~aq~~~ 572 (660)
+..+..+-.++.+++|+-.++.. +..+........++..+. ..+..++..++..+.|+|.....
T Consensus 273 ~~~~an~MltlR~laNlF~~~~~g~~ll~~~~~~~~i~~~i~~~l~~~~~~~nkNl~IA~ATLllNlAv~~~~------- 345 (425)
T 3pst_A 273 NKNITLTMLTVRILVNCFNNENWGVKLLESNQVYKSIFETIDTEFSQASAKQSQNLAIAVSTLIFNYSALVTK------- 345 (425)
T ss_dssp CSSHHHHHHHHHHHHHHTTCTTTHHHHHTSHHHHHHHHHHSCCCCTTCCHHHHHHHHHHHHHHHHHHHHHHHH-------
T ss_pred CCChhHHHHHHHHHHHhcCCcchHHHHhhCchhHHHHHHHHHHHhhhcccCCCchHHHHHHHHHHHHHHHHhc-------
Confidence 45778888899999999988884 444433334566666553 12567888888888899854210
Q ss_pred hhhHHHhhcChHHHHHHhhc---------CCCHHHHHHHHHHHHHhhcCC
Q 006114 573 KGRSHLMEDSALEWLIANSK---------TNSASTRRHVELALCHLAQNE 613 (660)
Q Consensus 573 e~r~~Li~~G~v~~Lv~lL~---------s~d~~vr~~Aa~AL~nLa~~~ 613 (660)
. +. +-..++.++.++. ..|+...-.+..||++|....
T Consensus 346 ~-~~---~~el~~~l~e~l~~~~g~~E~~~~d~EA~yRlLVALGtLv~~~ 391 (425)
T 3pst_A 346 G-NS---DLELLPIVADAINTKYGPLEEYQECEEAAYRLTVAYGNLATVE 391 (425)
T ss_dssp S-CS---CTTHHHHHHHHHHHTTTTSHHHHTSHHHHHHHHHHHHHHHHHC
T ss_pred c-cc---hHHHHHHHHHHHHhhccccccccCCHHHHHHHHHHHHHHHhcC
Confidence 0 00 1223445555554 247778788899999998533
No 224
>3haj_A Human pacsin2 F-BAR; pacsin,syndapin,FAP52,F-BAR, alternative splicing, coiled coil, cytoplasmic vesicle, endocytosis, phosphoprotein, polymorphism; 2.78A {Homo sapiens}
Probab=52.05 E-value=2.6e+02 Score=30.27 Aligned_cols=99 Identities=14% Similarity=0.191 Sum_probs=47.9
Q ss_pred hHHHHHHhhHHHHHHHHHHHHHHHHHHhh---hhchHHHHHHHHHHHhhhhhhHHHHhhhhhHHHHHH---hhHHHHHHH
Q 006114 167 YQKVLADTTQMYEKKITELIKQLEIEHAR---SEGAEEQVDTMKKLISDNQKSIEQYEMENSTYQKAL---ADTTQLYEK 240 (660)
Q Consensus 167 ~~~~~~~~~~~~~~~~~~l~~~l~~e~~~---~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~l---~~~~~~~~~ 240 (660)
..+.+.+....|+..-++........... ......++.+++..+...+... +.....|...+ +.+++.|+.
T Consensus 148 ~~~~l~KaKk~Y~~~cke~e~a~~~~~~a~~d~~~t~k~~eK~~~k~~k~~~~~---~~a~~~Y~~~v~~~n~~~~~y~~ 224 (486)
T 3haj_A 148 KLKEVEAAKKAHHAACKEEKLAISREANSKADPSLNPEQLKKLQDKIEKCKQDV---LKTKEKYEKSLKELDQGTPQYME 224 (486)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCSCSHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHTTSHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccCCHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHH
Confidence 34456666667766665544432221111 1112345555555554444322 23334444443 344556777
Q ss_pred HHHHHhhhhhhhhhhhhhhHHhHHHHHHHhhhhh
Q 006114 241 KIAELNKKLEDEHACFEGAVEQLDMVKKLLSDYQ 274 (660)
Q Consensus 241 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 274 (660)
.+..+-.++.+- -++.+..+|..|-.+.
T Consensus 225 ~~~~~~~~lQ~l------EeeRi~~lK~~L~~y~ 252 (486)
T 3haj_A 225 NMEQVFEQCQQF------EEKRLRFFREVLLEVQ 252 (486)
T ss_dssp HHHHHHHHHHHH------HHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHH------HHHHHHHHHHHHHHHH
Confidence 776666655542 2345556666555543
No 225
>1x79_B RAB GTPase binding effector protein 1; rabaptin5, GGA protein, GAT domain, intracellular trafficking, protein transport; 2.41A {Homo sapiens} SCOP: h.1.27.2
Probab=51.57 E-value=1.3e+02 Score=26.50 Aligned_cols=62 Identities=15% Similarity=0.162 Sum_probs=27.3
Q ss_pred hHHHHHHHHHHHHhhhhhhhhhhhhhhHHhHHHHHHHhhhhhccccchhHHHHHHHHHHHHHHHHHhHHHHHHHHHHH
Q 006114 233 DTTQLYEKKIAELNKKLEDEHACFEGAVEQLDMVKKLLSDYQNSNQGQKEVHELCVKLKETRQLHESAVYEVQTLKSE 310 (660)
Q Consensus 233 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~Lk~~Le~e~~~~e~~e~E~~~lks~ 310 (660)
.-+..|.+++++|.-++. ++|-.|..+.+-.|..+. .....|.+-+..++..-.|+.+|+.+
T Consensus 38 ~k~E~~k~qV~~L~~~~q-------~sE~~L~~Lqq~fsq~q~---------~vq~qL~~Lt~~Re~V~~eL~rLQ~e 99 (112)
T 1x79_B 38 QSSEDSSHQISALVLRAQ-------ASEILLEELQQGLSQAKR---------DVQEQMAVLMQSREQVSEELVRLQKD 99 (112)
T ss_dssp HHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHH---------HHHHHHHHHHHHHHHHHTC-------
T ss_pred HHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHH---------HHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 334556677777766554 444455555444444332 23333444444444444444444443
No 226
>3bas_A Myosin heavy chain, striated muscle/general control protein GCN4 chimera; alpha-helical coiled coil, disorder, salt links; 2.30A {Argopecten irradians} SCOP: h.1.26.1 PDB: 1nkn_A 3bat_A
Probab=50.75 E-value=98 Score=25.79 Aligned_cols=17 Identities=24% Similarity=0.309 Sum_probs=7.3
Q ss_pred HHHhhHHHHHHHHHHHH
Q 006114 171 LADTTQMYEKKITELIK 187 (660)
Q Consensus 171 ~~~~~~~~~~~~~~l~~ 187 (660)
|....+.++..|.++.-
T Consensus 68 L~~~K~eLE~~l~el~~ 84 (89)
T 3bas_A 68 LLSKNYHLENEVARLKK 84 (89)
T ss_dssp HHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 33444444444444433
No 227
>3mov_A Lamin-B1; LMNB1, B-type lamins, intermediate filament (IF), nucleus, coiled coil, structural genomics consortium, SGC, structural protein; 2.40A {Homo sapiens} PDB: 3tyy_A
Probab=49.69 E-value=53 Score=27.94 Aligned_cols=29 Identities=14% Similarity=0.198 Sum_probs=24.1
Q ss_pred hhhhHHHHHHhhHHHHHHHHHHHHhhhhh
Q 006114 222 MENSTYQKALADTTQLYEKKIAELNKKLE 250 (660)
Q Consensus 222 ~~~~~~~~~l~~~~~~~~~~~~~~~~~~~ 250 (660)
..|.++...|++|-..|...++.+...+.
T Consensus 19 ~~~~~LE~~l~e~E~~~~~e~~~~q~~i~ 47 (95)
T 3mov_A 19 KESRACLERIQELEDLLAKEKDNSRRMLT 47 (95)
T ss_dssp CCCHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 78889999999999999888887776654
No 228
>3abh_A Pacsin2, protein kinase C and casein kinase substrate in neurons protein 2; helix bundle, coiled-coil, endocytosis; 2.00A {Homo sapiens} PDB: 3q0k_A 3lll_A 3hah_A 3qni_A 3hai_A 3q84_A
Probab=49.60 E-value=2.1e+02 Score=28.61 Aligned_cols=34 Identities=18% Similarity=0.232 Sum_probs=20.2
Q ss_pred chHHHHHHHHHHHHHhh---------HHHHHHhh--hhhhhHHHH
Q 006114 14 DYESLCRKLETQVDHLT---------AEIERKQK--LRENDKCEL 47 (660)
Q Consensus 14 ~~~~~~~~~~~~~~~~~---------~~~~~~~~--~~~~~~~~~ 47 (660)
-|+.|+.+++.-++-+- +++|..|= |....+.-.
T Consensus 30 g~~~l~~r~~~g~~~~~el~~f~keRa~iE~eYak~L~kLakk~~ 74 (312)
T 3abh_A 30 NYKRTVKRIDDGHRLCSDLMNCLHERARIEKAYAQQLTEWARRWR 74 (312)
T ss_dssp TTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred ChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 58889988877665543 45555532 555544433
No 229
>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=49.54 E-value=1.4e+02 Score=32.18 Aligned_cols=23 Identities=22% Similarity=0.216 Sum_probs=12.2
Q ss_pred HHHHHHHHhhhhhhhhhhhhhhH
Q 006114 238 YEKKIAELNKKLEDEHACFEGAV 260 (660)
Q Consensus 238 ~~~~~~~~~~~~~~~~~~~~~~~ 260 (660)
+++.|.++.+++++-.+++-.|.
T Consensus 454 ~~~~~~~~~~~~~~~~~~~~~~~ 476 (487)
T 3oja_A 454 LKKLNGEADLALASANATLQELV 476 (487)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhhhhhhhhhhhHhcccHHHHHH
Confidence 34455555555555555555543
No 230
>1mhq_A ADP-ribosylation factor binding protein GGA2; super helix, protein transport; 2.20A {Homo sapiens} SCOP: a.118.9.2
Probab=48.47 E-value=30 Score=31.79 Aligned_cols=70 Identities=13% Similarity=-0.130 Sum_probs=58.0
Q ss_pred CHHHHHHHHccCCCHHHHHHHHHHHHHhhcC--chhHHHHHhcCccHHHHHhhcC-----CCCHHHHHHHHHHHHHHh
Q 006114 449 GLDALLLLLRTSQNTTILRVASGAIANLAMN--EMNQGLIMSRGGGQLLAKTASK-----TDDPQTLRMVAGALANLC 519 (660)
Q Consensus 449 gI~~Lv~LL~~s~d~~v~~~Aa~AL~nLA~~--~~n~~~Ive~g~I~~Ll~LL~~-----s~d~~v~~~Aa~aLanLa 519 (660)
++..|..-|. +.++.++..|+.+|-.+..+ +..+..|...+.+..|+.++.. ..++.|+..++..|..++
T Consensus 39 a~rai~krl~-~~n~~vql~AL~LLe~~vkNCG~~fh~evas~~Fl~eL~kl~~~k~~~~~~~~~Vk~kil~li~~W~ 115 (148)
T 1mhq_A 39 APWLLAHKIQ-SPQEKEALYALTVLEMCMNHCGEKFHSEVAKFRFLNELIKVLSPKYLGSWATGKVKGRVIEILFSWT 115 (148)
T ss_dssp HHHHHHHHHT-CSSHHHHHHHHHHHHHHHHHSCHHHHHHHTSHHHHHHHHHTTCCSTTSCCCCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhc-CCCHHHHHHHHHHHHHHHHHcCHHHHHHHhhHHHHHHHHHHHccccCCCCCCHHHHHHHHHHHHHHH
Confidence 4677778887 78999999999999988866 6778888888899999999863 247899999998888887
No 231
>4fi5_A Nucleoprotein; structural genomics, niaid, national institute of allergy AN infectious diseases; 2.20A {Hantaan virus}
Probab=48.42 E-value=32 Score=30.15 Aligned_cols=64 Identities=27% Similarity=0.334 Sum_probs=45.3
Q ss_pred hhhhhHHHHhhhhhHHHHHHhhHHHHHHHHHHHHhhh-hhhhhhhhhhhHHhHHHHHHHhhhhhc
Q 006114 212 DNQKSIEQYEMENSTYQKALADTTQLYEKKIAELNKK-LEDEHACFEGAVEQLDMVKKLLSDYQN 275 (660)
Q Consensus 212 ~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~ 275 (660)
++|..+.+++..-.+++..|.|.+..||+-=-+++|+ +..-.+-..+.+.-|.++|++|.|..-
T Consensus 26 eLq~Ei~~~E~QL~~ArQKLkdA~~~~e~DPDevNK~tl~~R~~~Vs~lq~KiaeLKrqLAd~va 90 (113)
T 4fi5_A 26 ELQREINAHEGQLVIARQKVRDAEKQYEKDPDELNKRTLTDREGVAVSIQAKIDELKRQLADRIA 90 (113)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3333334444444666677888888888888888876 455556677788888888888888765
No 232
>3a6p_A Exportin-5; exportin-5, RANGTP, nuclearexport, importin-BE family, nucleus, phosphoprotein, protein transport; HET: GTP; 2.92A {Homo sapiens}
Probab=46.67 E-value=2.4e+02 Score=34.29 Aligned_cols=129 Identities=12% Similarity=-0.011 Sum_probs=80.3
Q ss_pred CCHHHHHHHHHHHHHhhcCchhHHHHHhcCccHHHHHhhc-CCCCHHHHHHHHHHHHHHhc-----ChhHHHHHHhccHH
Q 006114 461 QNTTILRVASGAIANLAMNEMNQGLIMSRGGGQLLAKTAS-KTDDPQTLRMVAGALANLCG-----NEKLHTMLEEDGAI 534 (660)
Q Consensus 461 ~d~~v~~~Aa~AL~nLA~~~~n~~~Ive~g~I~~Ll~LL~-~s~d~~v~~~Aa~aLanLa~-----~~~~r~~iv~~G~V 534 (660)
.+..++..|-..|..+-..|+ +...+...|. .+.++.++..|+..|.+... -+......++...+
T Consensus 25 ~~~~~r~~Ae~~L~~~~~~p~---------~~~~~~~~L~~~s~~~~vR~~A~~~Lk~~I~~~W~~l~~e~k~~Ir~~ll 95 (1204)
T 3a6p_A 25 STQRYRLEALKFCEEFKEKCP---------ICVPCGLRLAEKTQVAIVRHFGLQILEHVVKFRWNGMSRLEKVYLKNSVM 95 (1204)
T ss_dssp CCHHHHHHHHHHHHHHHHHCT---------THHHHHHHHTSTTSCHHHHHHHHHHHHHHHHHSGGGSCHHHHHHHHHHHH
T ss_pred CChHHHHHHHHHHHHHHhCch---------HHHHHHHHHHccCCCHHHHHHHHHHHHHHHHHhcccCCHHHHHHHHHHHH
Confidence 477788888888888755443 4444444443 45678899999988888751 12223333344455
Q ss_pred HHHHHHhcC---CCHHHHHHHHHHHHHhhccchhhhhhcchhhhHHHhhcChHHHHHHhhcCCCHHHHHHHHHHHHHhhc
Q 006114 535 KALLAMVRS---GNIDVIAQVARGLANFAKCESRAIVQGQRKGRSHLMEDSALEWLIANSKTNSASTRRHVELALCHLAQ 611 (660)
Q Consensus 535 ~~Lv~lL~s---~~~~v~~~Al~aLanLA~~~~~~~aq~~~e~r~~Li~~G~v~~Lv~lL~s~d~~vr~~Aa~AL~nLa~ 611 (660)
..+.....+ ..+.++..++.+++.|+..+- +. .=.+.++.|+.++.+ ++..+..+..+|..|+.
T Consensus 96 ~~l~~~~~~~~~~~~~vr~kla~~la~Ia~~d~-------p~-----~Wp~ll~~L~~~~~~-~~~~~e~~L~iL~~L~E 162 (1204)
T 3a6p_A 96 ELIANGTLNILEEENHIKDALSRIVVEMIKREW-------PQ-----HWPDMLIELDTLSKQ-GETQTELVMFILLRLAE 162 (1204)
T ss_dssp HHHHHSSCCTTSSCHHHHHHHHHHHHHHHHHHS-------TT-----TCTTHHHHHHHHHHT-CHHHHHHHHHHHHHHHH
T ss_pred HHHHhhccccccccHHHHHHHHHHHHHHHHHhC-------cc-----cchHHHHHHHHHhcC-CHHHHHHHHHHHHHHHH
Confidence 544433221 457888999999999886531 00 003467777777765 45567777777777754
No 233
>2ic9_A Nucleocapsid protein; hantavirus, bunyaviridae, ssRNA negative- strand viruses, antiparallel coiled coil, viral protein; 2.00A {Sin nombre virus}
Probab=46.55 E-value=37 Score=28.98 Aligned_cols=36 Identities=25% Similarity=0.347 Sum_probs=20.2
Q ss_pred HHhhhhhHHHHHH----hhHHHHHHHHHHHHhhhhhhhhh
Q 006114 219 QYEMENSTYQKAL----ADTTQLYEKKIAELNKKLEDEHA 254 (660)
Q Consensus 219 ~~~~~~~~~~~~l----~~~~~~~~~~~~~~~~~~~~~~~ 254 (660)
+++.-+...++.- ..+-..|+.||++|.++|.|-.+
T Consensus 34 ~~e~DPDevNk~~~~~R~~~V~~lq~Ki~elkr~lAd~v~ 73 (96)
T 2ic9_A 34 AVELDPDDVNKSTLQSRRAAVSALETKLGELKRELADLIA 73 (96)
T ss_dssp HHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HhcCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 4445444444322 22334577788888777776554
No 234
>1dvp_A HRS, hepatocyte growth factor-regulated tyrosine kinase substrate; VHS, FYVE, zinc finger, superhelix, transferase; HET: CIT; 2.00A {Drosophila melanogaster} SCOP: a.118.9.2 g.50.1.1
Probab=45.93 E-value=24 Score=34.38 Aligned_cols=70 Identities=7% Similarity=0.055 Sum_probs=57.2
Q ss_pred CHHHHHHHHccCCCHHHHHHHHHHHHHhhcC--chhHHHHHhcCccHHHHHhhcCCCCHHHHHHHHHHHHHHh
Q 006114 449 GLDALLLLLRTSQNTTILRVASGAIANLAMN--EMNQGLIMSRGGGQLLAKTASKTDDPQTLRMVAGALANLC 519 (660)
Q Consensus 449 gI~~Lv~LL~~s~d~~v~~~Aa~AL~nLA~~--~~n~~~Ive~g~I~~Ll~LL~~s~d~~v~~~Aa~aLanLa 519 (660)
++..|..-|. +.++.++..|+.+|-.+..+ +..+..|.....+..|+.++.+..++.|+..++..+..++
T Consensus 43 a~r~l~krl~-~~n~~~~l~aL~Lle~~vkNcG~~f~~eva~~~fl~~l~~l~~~~~~~~Vk~kil~li~~W~ 114 (220)
T 1dvp_A 43 AFAAIKKKMN-SPNPHSSCYSLLVLESIVKNCGAPVHEEVFTKENCEMFSSFLESTPHENVRQKMLELVQTWA 114 (220)
T ss_dssp HHHHHHHHHT-CSSHHHHHHHHHHHHHHHHHSHHHHHHHHSSHHHHHHHHHHHHHCSCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHc-CCCHHHHHHHHHHHHHHHhccCHHHHHHHHhHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHH
Confidence 3666777776 78999999999999998876 6677788888888888888877678899988888888776
No 235
>1hjb_A Ccaat/enhancer binding protein beta; transcription/DNA, protein-DNA complex; HET: DNA; 3.0A {Homo sapiens} SCOP: h.1.3.1
Probab=44.80 E-value=39 Score=28.38 Aligned_cols=31 Identities=26% Similarity=0.288 Sum_probs=25.6
Q ss_pred hhhhhhhHHHHhhhhHHHHHHHHHhhhhhhh
Q 006114 107 NLVTRSEFLEKENAHLELEVEKILGELNHQK 137 (660)
Q Consensus 107 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 137 (660)
.+..+.++|+.||..|..+|..|..+++.-+
T Consensus 40 e~~~r~~~Le~EN~~Lr~~v~~L~~E~~~Lr 70 (87)
T 1hjb_A 40 ETQHKVLELTAENERLQKKVEQLSRELSTLR 70 (87)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4567888999999999999999888876544
No 236
>3ldz_A STAM-1, signal transducing adapter molecule 1; ubiquitin-binding, cytoplasm, UBL conjugation, endosome, membrane, protein transport, SH3 domain; 2.60A {Homo sapiens} SCOP: a.118.9.0
Probab=44.60 E-value=28 Score=31.57 Aligned_cols=69 Identities=10% Similarity=0.116 Sum_probs=54.6
Q ss_pred CHHHHHHHHccCCCHHHHHHHHHHHHHhhcC--chhHHHHHhcCccHHHHHhhcCCCCHHHHHHHHHHHHHHh
Q 006114 449 GLDALLLLLRTSQNTTILRVASGAIANLAMN--EMNQGLIMSRGGGQLLAKTASKTDDPQTLRMVAGALANLC 519 (660)
Q Consensus 449 gI~~Lv~LL~~s~d~~v~~~Aa~AL~nLA~~--~~n~~~Ive~g~I~~Ll~LL~~s~d~~v~~~Aa~aLanLa 519 (660)
++..|..-|. +.++.++..|..+|-.+..+ +.....|.....+..|+.++.. .++.|+..+...|..++
T Consensus 43 a~rai~Krl~-~~n~~~ql~AL~LLe~~vkNcG~~f~~evas~~Fl~el~~l~~~-~~~~Vk~kil~li~~W~ 113 (140)
T 3ldz_A 43 CLRSIMRRVN-HKDPHVAMQALTLLGACVSNCGKIFHLEVCSRDFASEVSNVLNK-GHPKVCEKLKALMVEWT 113 (140)
T ss_dssp HHHHHHHHHT-CSSHHHHHHHHHHHHHHHHHSCHHHHHHHSSHHHHHHHHHHHHH-SCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHc-CCChHHHHHHHHHHHHHHHhcCHHHHHHHhhHHHHHHHHHHhcc-CCHHHHHHHHHHHHHHH
Confidence 4666777776 67899988888888888765 5667777777788888888864 68899999998888886
No 237
>3m3w_A Pacsin3, protein kinase C and casein kinase II substrate P; mouse, BAR domain, endocytosis; 2.60A {Mus musculus} PDB: 3syv_A 3qe6_A
Probab=44.21 E-value=2.7e+02 Score=28.26 Aligned_cols=17 Identities=12% Similarity=0.212 Sum_probs=12.1
Q ss_pred chHHHHHHHHHHHHHhh
Q 006114 14 DYESLCRKLETQVDHLT 30 (660)
Q Consensus 14 ~~~~~~~~~~~~~~~~~ 30 (660)
-|+.|++++..-++-+-
T Consensus 21 g~~~l~~~~~~g~~~~~ 37 (320)
T 3m3w_A 21 NYRRTVQRVEDGHRLCG 37 (320)
T ss_dssp TTHHHHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHHHH
Confidence 57888888887665544
No 238
>1ci6_A Transcription factor ATF-4; BZIP; 2.60A {Homo sapiens} SCOP: h.1.3.1
Probab=44.09 E-value=45 Score=26.06 Aligned_cols=42 Identities=19% Similarity=0.188 Sum_probs=31.9
Q ss_pred HHHhhHHHHHHhhhhhhhHHHHhhhhHHHHHHHHHhhhhhhh
Q 006114 96 ESQISYDESMRNLVTRSEFLEKENAHLELEVEKILGELNHQK 137 (660)
Q Consensus 96 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 137 (660)
.|+.---+-+..|..+.+.|..+|..|..+|..|..+++.-+
T Consensus 16 R~R~KKk~~~~~le~~~~~L~~~N~~L~~~i~~L~~E~~~Lk 57 (63)
T 1ci6_A 16 RYRQKKRAEQEALTGECKELEKKNEALKERADSLAKEIQYLK 57 (63)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344444455567888889999999999999999988876554
No 239
>3cve_A Homer protein homolog 1; coiled coil, alternative splicing, cell junction, cytoplasm, membrane, postsynaptic cell membrane, synapse; 1.75A {Rattus norvegicus}
Probab=43.43 E-value=69 Score=25.94 Aligned_cols=46 Identities=11% Similarity=0.213 Sum_probs=29.5
Q ss_pred hhhHHHHHHhhHHHHHHHHHHHHHHHHHHhhhhchHHHHHHHHHHH
Q 006114 165 SSYQKVLADTTQMYEKKITELIKQLEIEHARSEGAEEQVDTMKKLI 210 (660)
Q Consensus 165 ~~~~~~~~~~~~~~~~~~~~l~~~l~~e~~~~~~~~~~~~~l~~~l 210 (660)
..+.+.+...++.+|..+..+..+|++-......+..++..+-.+|
T Consensus 6 ~~kLq~~E~~N~~Le~~v~~le~~Le~s~~~q~~~~~Elk~~~e~L 51 (72)
T 3cve_A 6 HMKLQEVEIRNKDLEGQLSEMEQRLEKSQSEQDAFRSNLKTLLEIL 51 (72)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3445556667777777777777777777766666666655544433
No 240
>3u1c_A Tropomyosin alpha-1 chain; anti-parallel coiled coil, contractIle protein; 1.80A {Gallus gallus} PDB: 3u1a_A
Probab=43.22 E-value=1.5e+02 Score=25.15 Aligned_cols=34 Identities=15% Similarity=0.149 Sum_probs=19.2
Q ss_pred HHHHHhhhhhhhhhhhhHHHHHHHHHHHhhhhhh
Q 006114 126 VEKILGELNHQKDQNNLKREKIVQLEISLKNSKQ 159 (660)
Q Consensus 126 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 159 (660)
|+.|++.++.-+.......++..++|..++...+
T Consensus 4 MdaIKkKm~~lk~e~e~a~drae~~e~~~k~~e~ 37 (101)
T 3u1c_A 4 MDAIKKKMQMLKLDKENALDRAEQAEADKKAAEE 37 (101)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4455555555555555566666666655555443
No 241
>3l3f_X Protein DOA1, DOA1/UFD3; armadillo-like repeat structure, nucleus, UBL conjugation PA protein binding; 1.90A {Saccharomyces cerevisiae}
Probab=42.57 E-value=1.4e+02 Score=31.40 Aligned_cols=100 Identities=14% Similarity=0.148 Sum_probs=63.0
Q ss_pred CCCHHHHHHHHHHHHHHhcChhHHHHHHhc-cHHHHHHHHhc--------CCCHHHHHHHHHHHHHhhccchhhhhhcch
Q 006114 502 TDDPQTLRMVAGALANLCGNEKLHTMLEED-GAIKALLAMVR--------SGNIDVIAQVARGLANFAKCESRAIVQGQR 572 (660)
Q Consensus 502 s~d~~v~~~Aa~aLanLa~~~~~r~~iv~~-G~V~~Lv~lL~--------s~~~~v~~~Al~aLanLA~~~~~~~aq~~~ 572 (660)
+..+..+-.++.+++|+-.++.....++.. .....++..+. ..+..++..++..+.|+|.....
T Consensus 210 ~~~~~n~MltlR~laNlF~~~~~g~~ll~~~~~~~~i~~~i~~~~~~~~~~~nkNl~IA~ATL~lNlAv~~~~------- 282 (362)
T 3l3f_X 210 NKNITLTMLTVRILVNCFNNENWGVKLLESNQVYKSIFETIDTEFSQASAKQSQNLAIAVSTLIFNYSALVTK------- 282 (362)
T ss_dssp CSSHHHHHHHHHHHHHHTTCTTTHHHHHTSHHHHTTHHHHSCSCCSSCCHHHHHHHHHHHHHHHHHHHHHHHH-------
T ss_pred CCChhHHHHHHHHHHHhccCcchHHHHHhcchhHHHHHHHHHHHhhhcccCCCchHHHHHHHHHHHHHHHHhc-------
Confidence 456788888999999999888844444433 23344555442 23567888888888899854210
Q ss_pred hhhHHHhhcChHHHHHHhhc---------CCCHHHHHHHHHHHHHhhcC
Q 006114 573 KGRSHLMEDSALEWLIANSK---------TNSASTRRHVELALCHLAQN 612 (660)
Q Consensus 573 e~r~~Li~~G~v~~Lv~lL~---------s~d~~vr~~Aa~AL~nLa~~ 612 (660)
. +. +-..++.+..++. ..|+...-.+..||++|...
T Consensus 283 ~-~~---~~el~~~l~~~l~~~~g~~E~~~~d~EA~yRlLVALGtL~~~ 327 (362)
T 3l3f_X 283 G-NS---DLELLPIVADAINTKYGPLEEYQECEEAAYRLTVAYGNLATV 327 (362)
T ss_dssp T-CS---CTTHHHHHHHHHHHTTTTSHHHHTSHHHHHHHHHHHHHHHHH
T ss_pred c-cc---hHHHHHHHHHHHHhhccccccccCCHHHHHHHHHHHHHHHhc
Confidence 0 00 1223445555554 24777888889999999853
No 242
>2ic9_A Nucleocapsid protein; hantavirus, bunyaviridae, ssRNA negative- strand viruses, antiparallel coiled coil, viral protein; 2.00A {Sin nombre virus}
Probab=42.49 E-value=99 Score=26.34 Aligned_cols=57 Identities=23% Similarity=0.241 Sum_probs=40.9
Q ss_pred HHhhhhhHHHHHHhhHHHHHHHHHHHHhhh-hhhhhhhhhhhHHhHHHHHHHhhhhhc
Q 006114 219 QYEMENSTYQKALADTTQLYEKKIAELNKK-LEDEHACFEGAVEQLDMVKKLLSDYQN 275 (660)
Q Consensus 219 ~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~ 275 (660)
+++..-.+++..|.|.+..||+-=-+++|+ +..-.+-..+.+.-|.++|++|.|.+.
T Consensus 16 ~~E~QL~~A~QKLkdA~~~~e~DPDevNk~~~~~R~~~V~~lq~Ki~elkr~lAd~v~ 73 (96)
T 2ic9_A 16 LHEQRLVTTRQKLKDAERAVELDPDDVNKSTLQSRRAAVSALETKLGELKRELADLIA 73 (96)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 444444566667888888888888888776 455556667778888888888888764
No 243
>1x5b_A Signal transducing adaptor molecule 2; VHS domain, ubiquitin binding, STAM2, structural genomics, NPPSFA; NMR {Homo sapiens} PDB: 2l0t_B
Probab=42.45 E-value=38 Score=31.51 Aligned_cols=69 Identities=10% Similarity=0.209 Sum_probs=53.6
Q ss_pred HHHHHHhhCCCCHHHHHHHHHHHHHhhCC--chhHHHHHHcCCHHHHHHHHccCCCHHHHHHHHHHHHHhh
Q 006114 409 LPKILQLLTSEDPDVQIHAVKVVANLAAE--DINQEKIVEEGGLDALLLLLRTSQNTTILRVASGAIANLA 477 (660)
Q Consensus 409 I~~LV~LL~s~d~~vr~~Aa~aL~nLa~~--~en~~~Ive~GgI~~Lv~LL~~s~d~~v~~~Aa~AL~nLA 477 (660)
+..|..-|.+.++.++..|+.+|-.|..+ +.....|.....+..|+.++....++.|+..+..+|..-+
T Consensus 54 ~ral~krl~~~n~~vql~AL~LLd~~vkNcG~~Fh~evas~~Fl~el~~l~~~~~~~~Vk~kil~li~~W~ 124 (163)
T 1x5b_A 54 LKAIMKRVNHKVPHVALQALTLLGACVANCGKIFHLEVCSRDFATEVRAVIKNKAHPKVCEKLKSLMVEWS 124 (163)
T ss_dssp HHHHHHHHTCSSHHHHHHHHHHHHHHHHHTCHHHHHHHTSHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHcCCCHHHHHHHHHHHHHHHHHhhHHHHHHHhhHHHHHHHHHHHccCCCHHHHHHHHHHHHHHH
Confidence 45566667889999999999999888873 5566677777778888888875578889888888776554
No 244
>1gqe_A Release factor 2, RF2; protein synthesis, ribosome, macromolecular mimicry, translation; 1.81A {Escherichia coli} SCOP: e.38.1.1 PDB: 1mi6_A 1ml5_Z*
Probab=42.39 E-value=1.6e+02 Score=30.98 Aligned_cols=74 Identities=18% Similarity=0.260 Sum_probs=34.9
Q ss_pred HHHHHHhhhhhhh-----hhhhhhhHHhHHHHHHHhhhhhccccchhHHHHHHHHHHHH--HHHHHhHHHHHHHHHHHHH
Q 006114 240 KKIAELNKKLEDE-----HACFEGAVEQLDMVKKLLSDYQNSNQGQKEVHELCVKLKET--RQLHESAVYEVQTLKSEYK 312 (660)
Q Consensus 240 ~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~Lk~~Le~e--~~~~e~~e~E~~~lks~l~ 312 (660)
.++++|.+++.|- ..++...-.++..++..+..+..+....+++..+..+++++ ...++-+.+|+..++.++.
T Consensus 32 ~r~~el~~~~~~p~~w~d~~~~~~~~ke~~~l~~~v~~~~~~~~~~~d~~~~~el~~~e~D~e~~~~a~~e~~~l~~~l~ 111 (365)
T 1gqe_A 32 ERLEEVNAELEQPDVWNEPERAQALGKERSSLEAVVDTLDQMKQGLEDVSGLLELAVEADDEETFNEAVAELDALEEKLA 111 (365)
T ss_dssp HHHHHHHHHHHSGGGGGSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhcCCccccCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCHHHHHHHHHHHHHHHHHHH
Confidence 3444444444432 23334444444455555555555555555555555555432 2334445555555555544
Q ss_pred H
Q 006114 313 N 313 (660)
Q Consensus 313 ~ 313 (660)
+
T Consensus 112 ~ 112 (365)
T 1gqe_A 112 Q 112 (365)
T ss_dssp H
T ss_pred H
Confidence 3
No 245
>2v4h_A NF-kappa-B essential modulator; transcription, metal-binding, NEMO - IKK gamma - NFKB pathwa darpin, transcription regulation; 2.9A {Mus musculus}
Probab=41.87 E-value=1.8e+02 Score=25.43 Aligned_cols=43 Identities=12% Similarity=0.181 Sum_probs=37.5
Q ss_pred HhhHHHHHHHHHHHHHHHHHHhhhhchHHHHHHHHHHHhhhhh
Q 006114 173 DTTQMYEKKITELIKQLEIEHARSEGAEEQVDTMKKLISDNQK 215 (660)
Q Consensus 173 ~~~~~~~~~~~~l~~~l~~e~~~~~~~~~~~~~l~~~l~~~~~ 215 (660)
.++++++--+.=...+++.|++-|..+..+...|+.++.-+|.
T Consensus 62 E~I~vLkaQv~IY~~DF~aERadREkl~~eKe~L~~ql~~Lq~ 104 (110)
T 2v4h_A 62 ETVPVLKAQADIYKADFQAERHAREKLVEKKEYLQEQLEQLQR 104 (110)
T ss_dssp THHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHccchhhHHHHHhHHHHHHHHHHHHHH
Confidence 4677888888888899999999999999999999999988883
No 246
>3zyq_A Hepatocyte growth factor-regulated tyrosine kinas substrate; signaling; 1.48A {Homo sapiens} PDB: 4avx_A*
Probab=41.70 E-value=31 Score=33.82 Aligned_cols=69 Identities=14% Similarity=0.240 Sum_probs=55.1
Q ss_pred HHHHHHhhCCCCHHHHHHHHHHHHHhhC--CchhHHHHHHcCCHHHHHHHHccCCCHHHHHHHHHHHHHhh
Q 006114 409 LPKILQLLTSEDPDVQIHAVKVVANLAA--EDINQEKIVEEGGLDALLLLLRTSQNTTILRVASGAIANLA 477 (660)
Q Consensus 409 I~~LV~LL~s~d~~vr~~Aa~aL~nLa~--~~en~~~Ive~GgI~~Lv~LL~~s~d~~v~~~Aa~AL~nLA 477 (660)
+..|..-|.+.++.++..|+.+|-.+.. .+.....|.....+..|+.++...+++.|+..++.+|...+
T Consensus 47 ~ral~krl~~~n~~v~l~aL~LLe~~vkNcG~~f~~eias~~fl~~l~~l~~~~~~~~Vk~kil~li~~W~ 117 (226)
T 3zyq_A 47 VNSIKKKVNDKNPHVALYALEVMESVVKNCGQTVHDEVANKQTMEELKDLLKRQVEVNVRNKILYLIQAWA 117 (226)
T ss_dssp HHHHHHHHTCSSHHHHHHHHHHHHHHHHHHCHHHHHHHSSHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHcCCCHHHHHHHHHHHHHHHHhcchHHHHhhccHHHHHHHHHHhccCCCHHHHHHHHHHHHHHH
Confidence 5556667779999999999999988887 45566777777778888888877788899998888877664
No 247
>1vsy_5 Proteasome activator BLM10; 20S proteasome BLM10, hydrolase, nucleus, phosphoprotein, PR proteasome, threonine protease; 3.00A {Saccharomyces cerevisiae} PDB: 3l5q_6
Probab=41.65 E-value=1.6e+02 Score=35.25 Aligned_cols=182 Identities=13% Similarity=0.074 Sum_probs=91.5
Q ss_pred HHHHHHhhCCCCHHHHHHHHHHHHHhhCC-chhHHHHHHcCCHHHHHHHHcc---CCCHHHHHHHHHHHHHhhcCchhHH
Q 006114 409 LPKILQLLTSEDPDVQIHAVKVVANLAAE-DINQEKIVEEGGLDALLLLLRT---SQNTTILRVASGAIANLAMNEMNQG 484 (660)
Q Consensus 409 I~~LV~LL~s~d~~vr~~Aa~aL~nLa~~-~en~~~Ive~GgI~~Lv~LL~~---s~d~~v~~~Aa~AL~nLA~~~~n~~ 484 (660)
+..|+.+-.|....||..|-.+|.++... +..+..| +|.++..|.. +.+.+-.. |||.-|....-...
T Consensus 135 l~dL~~Ls~S~Y~~VR~~AQ~~L~~~~~~~~gs~~~i-----ip~ll~~L~~~~~~~~~~~iK---GaLy~L~~k~~~~~ 206 (997)
T 1vsy_5 135 LVDIIQLATSLYPDIYKPAQGTLVHCMKQLVGSYGVV-----INKIIPSLEKAIKDHDYMKIQ---VILNVLLIKKIHRK 206 (997)
T ss_dssp HHHHHHHHTSSCHHHHHHHHHHHHHHHTTBTTHHHHH-----HHHHHHHHHHHHHTCSCHHHH---HHHHHTTSHHHHHH
T ss_pred HHHHHHHhcCchHHHHHHHHHHHHHHHHhcccHHHHH-----HHHHHHHHhccccCCCHHHHH---HHHHHHhhhhhhhH
Confidence 45566766789999999999999987773 4333332 5667776654 33333223 34444432211111
Q ss_pred HHHh----cCccHHHHHhhcCCCCHHHHHHHHHHHHHHhc---Chh---------------------------------H
Q 006114 485 LIMS----RGGGQLLAKTASKTDDPQTLRMVAGALANLCG---NEK---------------------------------L 524 (660)
Q Consensus 485 ~Ive----~g~I~~Ll~LL~~s~d~~v~~~Aa~aLanLa~---~~~---------------------------------~ 524 (660)
..-+ ...++.|+.... ...|.++..+-.+...+.. .|. .
T Consensus 207 ~~~d~~~~~~~~~ali~~~~-~dKpsI~~l~~~l~~~i~~~~~~p~~~~~~~~~~~~~i~~~d~~i~~~~~~~~~~~~~~ 285 (997)
T 1vsy_5 207 LMTDYKDIGRLIFLLIECCR-VNELEIGMYADKILTDIVIGIKIPSSVCVISDQAFLPLAPPDGTINLQVEAVKLAKKKK 285 (997)
T ss_dssp GGGCHHHHHHHHHHHHHTCS-CSSSSTTTHHHHHHHHHHTSCCCCCSCCCCCGGGTGGGCCSCSSTTSHHHHHHHHTTHH
T ss_pred HhcChHHHHHHHHHHHHhCc-CCCHHHHHHHHHHHHHHHhcccCchHHHHHHHHHHhccCCCcHHHHHHHHHHHHHHHHH
Confidence 1111 223455555542 3556666555544333331 000 0
Q ss_pred HHHHHh--ccHHHHHHHHhc-CCC--HHHHHHHHHHHHHhhccchhhhhhcchhhhHHHhhcChHHHHHHhhcCCCHHHH
Q 006114 525 HTMLEE--DGAIKALLAMVR-SGN--IDVIAQVARGLANFAKCESRAIVQGQRKGRSHLMEDSALEWLIANSKTNSASTR 599 (660)
Q Consensus 525 r~~iv~--~G~V~~Lv~lL~-s~~--~~v~~~Al~aLanLA~~~~~~~aq~~~e~r~~Li~~G~v~~Lv~lL~s~d~~vr 599 (660)
+....+ .+....|+.++. +.+ =.....++..|.++...- .......++..++..+.++++.+|
T Consensus 286 r~~~~~~~~~L~~~l~~~~~~~~h~~Wk~~~~~~~~l~~l~~r~------------d~~~~~~~v~~~~~~l~~dhp~~R 353 (997)
T 1vsy_5 286 REYYLSLLVDLQDKLLDKLDNEKDMGWKIRMFILRFVTQIQSNL------------ESKPDKRAVFSIISQISTKHPEII 353 (997)
T ss_dssp HHHHHHHHHHHHHHHHHHHHSSTTCCSCHHHHHHHHHHHHTCCS------------SCCCCHHHHHHHHGGGGGCCHHHH
T ss_pred HHHHHHHHHHHHHHHHHHhccCCChhHHHHHHHHHHHHHHHhcC------------CCCCCHHHHHHHHHhhcCCCHHHH
Confidence 000000 122223333331 112 223333334433333211 112234577788888999999999
Q ss_pred HHHHHHHHHhhc
Q 006114 600 RHVELALCHLAQ 611 (660)
Q Consensus 600 ~~Aa~AL~nLa~ 611 (660)
..|..++..+..
T Consensus 354 ~~a~~~l~~il~ 365 (997)
T 1vsy_5 354 HLVVKSLLSTCN 365 (997)
T ss_dssp HHHHHHHTHHHH
T ss_pred HHHHHHHHHHHH
Confidence 999988876643
No 248
>1xaw_A Occludin; coiled-coil, cell adhesion; 1.45A {Homo sapiens} SCOP: h.4.17.1 PDB: 1wpa_A 3g7c_A
Probab=41.53 E-value=2.1e+02 Score=26.11 Aligned_cols=63 Identities=14% Similarity=0.338 Sum_probs=36.1
Q ss_pred HHHHHHHHHHhhhhhhhhhhhhhhHHHHHHhhHHHHHHHHHHH--HHHHHHHhhhhchHHHHHHHHHHHhhhh
Q 006114 144 REKIVQLEISLKNSKQQQLDNSSYQKVLADTTQMYEKKITELI--KQLEIEHARSEGAEEQVDTMKKLISDNQ 214 (660)
Q Consensus 144 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~--~~l~~e~~~~~~~~~~~~~l~~~l~~~~ 214 (660)
+.+..+|+.+|++.. +++..++++++ .|++ |++.+ -.....+.+|.-++.+|.++|+...++-
T Consensus 72 ~~~F~~Ld~~L~~l~----~~s~e~~~i~~---EY~r-~k~~K~dp~y~ekK~Rc~yL~~KLsHIK~lI~~YD 136 (140)
T 1xaw_A 72 NKELSRLDKELDDYR----EESEEYMAAAD---EYNR-LKQVKGSADYKSKKNHCKQLKSKLSHIKKMVGDYD 136 (140)
T ss_dssp HHHHHHHHHHHHHSC----TTSHHHHHHHH---HHHH-HHHHHTSHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCC----CCCHHHHHHHH---HHHH-HHHhcCCcHHHHHHHHHHHHHHHHHHHHHHHHhhh
Confidence 345556666665532 33444444332 2222 22221 1255667788888899999998888876
No 249
>1juq_A ADP-ribosylation factor binding protein GGA3; protein-peptide compelx, VHS domain, DXXLL sorting signal, signaling protein; 2.20A {Homo sapiens} SCOP: a.118.9.2 PDB: 1jpl_A 1lf8_A*
Probab=40.99 E-value=44 Score=31.42 Aligned_cols=70 Identities=13% Similarity=-0.090 Sum_probs=57.5
Q ss_pred CHHHHHHHHccCCCHHHHHHHHHHHHHhhcC--chhHHHHHhcCccHHHHHhhcC-----CCCHHHHHHHHHHHHHHh
Q 006114 449 GLDALLLLLRTSQNTTILRVASGAIANLAMN--EMNQGLIMSRGGGQLLAKTASK-----TDDPQTLRMVAGALANLC 519 (660)
Q Consensus 449 gI~~Lv~LL~~s~d~~v~~~Aa~AL~nLA~~--~~n~~~Ive~g~I~~Ll~LL~~-----s~d~~v~~~Aa~aLanLa 519 (660)
++..|..-|. +.++.++..|+.+|-.|..+ +..+..|...+.+..|+.++.. ..++.|+..++..|..++
T Consensus 51 A~ral~krl~-~~n~~vql~AL~LLd~~vkNCG~~Fh~evas~~Fl~eL~kl~~~k~~~~~~~~~Vk~kil~li~~W~ 127 (171)
T 1juq_A 51 AVRLLAHKIQ-SPQEWEALQALTVLEACMKNCGRRFHNEVGKFRFLNELIKVVSPKYLGDRVSEKVKTKVIELLYSWT 127 (171)
T ss_dssp HHHHHHHHHT-CSSHHHHHHHHHHHHHHHHHSHHHHHHHHTSHHHHHHHHHHHCCCCCCTTSCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhc-CCCHHHHHHHHHHHHHHHHHcCHHHHHHHhhHHHHHHHHHHhccccCCCCCCHHHHHHHHHHHHHHH
Confidence 4677778887 78999999999999988876 6678888888889999999863 246799999998888887
No 250
>1elk_A Target of MYB1; superhelix of helices, endocytosis/exocytosis complex; 1.50A {Homo sapiens} SCOP: a.118.9.2
Probab=40.22 E-value=46 Score=30.75 Aligned_cols=71 Identities=14% Similarity=0.036 Sum_probs=54.7
Q ss_pred CHHHHHHHHccCCCHHHHHHHHHHHHHhhcC--chhHHHHHhcCccHH-HHHhhcC--CCCHHHHHHHHHHHHHHh
Q 006114 449 GLDALLLLLRTSQNTTILRVASGAIANLAMN--EMNQGLIMSRGGGQL-LAKTASK--TDDPQTLRMVAGALANLC 519 (660)
Q Consensus 449 gI~~Lv~LL~~s~d~~v~~~Aa~AL~nLA~~--~~n~~~Ive~g~I~~-Ll~LL~~--s~d~~v~~~Aa~aLanLa 519 (660)
++..|..-|.++.++.++..|..+|-.+..+ +..+..|...+.+.. |+.++.. .+++.|+..++..|..++
T Consensus 54 a~ral~krl~~~~n~~v~l~AL~LLd~~vkNcG~~fh~eva~~~fl~e~Lvk~~~~k~~~~~~Vk~kil~li~~W~ 129 (157)
T 1elk_A 54 ALRAVKKRIVGNKNFHEVMLALTVLETCVKNCGHRFHVLVASQDFVESVLVRTILPKNNPPTIVHDKVLNLIQSWA 129 (157)
T ss_dssp HHHHHHHHHTTCCCHHHHHHHHHHHHHHHHHSCHHHHHHHTSHHHHHHHTHHHHSTTTCCCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhccCCCHHHHHHHHHHHHHHHHHhCHHHHHHHhhHHHHHHHHHHHhccCCCCcHHHHHHHHHHHHHHH
Confidence 4667777786457898888899988888765 777778888888887 7888742 244688888888888876
No 251
>2v66_B Nuclear distribution protein NUDE-like 1; structural protein, developmental protein, structural protei phosphorylation, transport, microtubule; 2.10A {Homo sapiens}
Probab=39.17 E-value=2e+02 Score=25.20 Aligned_cols=100 Identities=17% Similarity=0.208 Sum_probs=0.0
Q ss_pred hhhcchHHHHHHHHHHHHHhhHHHHHHhhhhhhhHHHHHHHHHHHHhhHHHHHhhHHHHHHHHHHHHHHHHHhhhhchHH
Q 006114 10 KEEFDYESLCRKLETQVDHLTAEIERKQKLRENDKCELEKLLRECQISYDEAKDNLVTQVELLTAKIEMQQKLRENDKYE 89 (660)
Q Consensus 10 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 89 (660)
|-+=|..+-+.+|..++|.+-.-.+..++--...-..|.+.+...+.....+...++ .++.-.-.+||+.|.
T Consensus 3 k~~rdL~~~~~~L~~E~e~~k~K~~~~~~e~~~~~~~Lq~El~~lr~~~~~l~~~iR-eLEq~NDDLER~~R~------- 74 (111)
T 2v66_B 3 QRNRDLQADNQRLKYEVEALKEKLEHQYAQSYKQVSVLEDDLSQTRAIKEQLHKYVR-ELEQANDDLERAKRA------- 74 (111)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHH-------
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHhchHHHHHHHH-------
Q ss_pred HHHHHHHHHhhHHHHHHhhhhhhhHHHHhhhhHHHHHHH
Q 006114 90 FEKQLRESQISYDESMRNLVTRSEFLEKENAHLELEVEK 128 (660)
Q Consensus 90 ~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 128 (660)
-..++..+..||.-..-.|+=||.|+++
T Consensus 75 -----------t~~SLeD~E~k~n~aiErnalLE~El~E 102 (111)
T 2v66_B 75 -----------TIVSLEDFEQRLNQAIERNAFLESELDE 102 (111)
T ss_dssp -----------HHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred -----------HHhhHHHHHHHHHHHHHHHHHHHHHHHH
No 252
>1gu4_A CAAT/enhancer binding protein beta; transcription/DNA, protein-DNA complex, transcription factor, BZIP, C/EBP; 1.80A {Homo sapiens} SCOP: h.1.3.1 PDB: 1gtw_A 1gu5_A 1h88_A 1h8a_A 1io4_A 2e43_A* 2e42_A* 1h89_A 1ci6_B 1nwq_A
Probab=39.00 E-value=53 Score=26.98 Aligned_cols=31 Identities=26% Similarity=0.288 Sum_probs=25.2
Q ss_pred hhhhhhhHHHHhhhhHHHHHHHHHhhhhhhh
Q 006114 107 NLVTRSEFLEKENAHLELEVEKILGELNHQK 137 (660)
Q Consensus 107 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 137 (660)
.+..+.++|+.||..|..+|..|..++..=+
T Consensus 40 e~~~r~~~L~~eN~~L~~~v~~L~~E~~~Lr 70 (78)
T 1gu4_A 40 ETQHKVLELTAENERLQKKVEQLSRELSTLR 70 (78)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5667888999999999999998888775433
No 253
>1go4_E MAD1 (mitotic arrest deficient)-like 1; mitotic spindle checkpoint, cell cycle, mitosis, nuclear Pro; 2.05A {Homo sapiens} SCOP: h.1.22.1
Probab=38.51 E-value=77 Score=27.30 Aligned_cols=33 Identities=30% Similarity=0.314 Sum_probs=24.2
Q ss_pred HHHHhhhhhhhHHHHhhhhHHHHHHHHHhhhhh
Q 006114 103 ESMRNLVTRSEFLEKENAHLELEVEKILGELNH 135 (660)
Q Consensus 103 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 135 (660)
|.+-+|..+++-|++||.+|..+++.|-..|.+
T Consensus 12 e~~~~lr~ei~~Le~E~~rLr~~~~~LE~~Le~ 44 (100)
T 1go4_E 12 EEADTLRLKVEELEGERSRLEEEKRMLEAQLER 44 (100)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 445567777777888888888887777777755
No 254
>2efk_A CDC42-interacting protein 4; EFC domain, structural genomics, NPPSFA, national project on structural and functional analyses; 2.30A {Homo sapiens} SCOP: a.238.1.4
Probab=37.90 E-value=3.1e+02 Score=27.05 Aligned_cols=16 Identities=31% Similarity=0.387 Sum_probs=11.0
Q ss_pred hHHHHHHHHHHHHHhh
Q 006114 15 YESLCRKLETQVDHLT 30 (660)
Q Consensus 15 ~~~~~~~~~~~~~~~~ 30 (660)
|+.|+.+++..++-+-
T Consensus 9 ~~~l~~~~~~g~~~~~ 24 (301)
T 2efk_A 9 FEVLERHTQWGLDLLD 24 (301)
T ss_dssp HHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHH
Confidence 7777887777666553
No 255
>1m1j_A Fibrinogen alpha subunit; coiled coils, disulfide rings, fibrinogen, blood clotting; HET: NDG NAG; 2.70A {Gallus gallus} SCOP: h.1.8.1 PDB: 1ei3_A
Probab=37.16 E-value=3.2e+02 Score=29.58 Aligned_cols=98 Identities=11% Similarity=0.226 Sum_probs=65.1
Q ss_pred HHHHhhHHHHHHHHHHHHHHHHHHhhhhchHHHHHHHHHHHhhhhhhHHHHhhhhhHHHHHHhhHHHHHHHHHHHHhhhh
Q 006114 170 VLADTTQMYEKKITELIKQLEIEHARSEGAEEQVDTMKKLISDNQKSIEQYEMENSTYQKALADTTQLYEKKIAELNKKL 249 (660)
Q Consensus 170 ~~~~~~~~~~~~~~~l~~~l~~e~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~ 249 (660)
.+-++.+..-..|.+|++.|.+=...+....--+..+...+.+-++. ...+..+.+.-+.-.|++|.-|..++
T Consensus 55 lL~kqerdv~~rI~kLkn~L~~~s~s~~~s~~y~~~~~~~lk~~~~q-------~~dndn~~~e~S~eLe~ri~yIK~kV 127 (491)
T 1m1j_A 55 IIDDTDQNYSQRIDNIRQQLADSQNKYKTSNRVIVETINILKPGLEG-------AQQLDENYGHVSTELRRRIVTLKQRV 127 (491)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHTTTHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHhhhhHHHHHHHHHHHHHHHHhhcchHHHHHHHHHHHHHHHHhh-------hccchhHHHHHHHHHHHHHHHHHHHH
Confidence 35566677777888888888888777777777777777777777732 23344455555566777787777777
Q ss_pred hhhhhhhhhhHHhHHHHHHHhhhhhccccchhHHHHHHHHHHHHHHHHHhHH
Q 006114 250 EDEHACFEGAVEQLDMVKKLLSDYQNSNQGQKEVHELCVKLKETRQLHESAV 301 (660)
Q Consensus 250 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~Lk~~Le~e~~~~e~~e 301 (660)
.+-. .-|.-|+.-|++.+....++|
T Consensus 128 d~qi---------------------------~~IrvLq~~l~~q~skIQRLE 152 (491)
T 1m1j_A 128 ATQV---------------------------NRIKALQNSIQEQVVEMKRLE 152 (491)
T ss_dssp HHHH---------------------------HHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHH---------------------------HHHHHHHHHHHHHHHHHHHHH
Confidence 6322 224556666666666666666
No 256
>3cvf_A Homer-3, homer protein homolog 3; coiled coil, alternative splicing, cell junction, cytoplasm, membrane, phosphoprotein, polymorphism; 2.90A {Homo sapiens}
Probab=36.89 E-value=89 Score=25.73 Aligned_cols=46 Identities=20% Similarity=0.252 Sum_probs=31.3
Q ss_pred hhhHHHHHHhhHHHHHHHHHHHHHHHHHHhhhhchHHHHHHHHHHH
Q 006114 165 SSYQKVLADTTQMYEKKITELIKQLEIEHARSEGAEEQVDTMKKLI 210 (660)
Q Consensus 165 ~~~~~~~~~~~~~~~~~~~~l~~~l~~e~~~~~~~~~~~~~l~~~l 210 (660)
..+.+.+...++.+|..+..+...|++-...+..+..++..+-.+|
T Consensus 12 ~~klq~~E~rN~~Le~~v~~le~~Le~s~~~q~~~~~Elk~l~e~L 57 (79)
T 3cvf_A 12 QQKVQDLETRNAELEHQLRAMERSLEEARAERERARAEVGRAAQLL 57 (79)
T ss_dssp THHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3445566667777778888877777777777777766666554444
No 257
>1m1j_B Fibrinogen beta chain; coiled coils, disulfide rings, fibrinogen, blood clotting; HET: NDG NAG; 2.70A {Gallus gallus} SCOP: d.171.1.1 h.1.8.1 PDB: 1ei3_B*
Probab=36.55 E-value=4.5e+02 Score=28.58 Aligned_cols=38 Identities=13% Similarity=0.135 Sum_probs=18.2
Q ss_pred HHHHHHHHHHHHHHHHhhhhchHHHHHHHHHHHhhhhh
Q 006114 178 YEKKITELIKQLEIEHARSEGAEEQVDTMKKLISDNQK 215 (660)
Q Consensus 178 ~~~~~~~l~~~l~~e~~~~~~~~~~~~~l~~~l~~~~~ 215 (660)
..+.|.+|...|+.-......+.+=+..|+..+.+.|+
T Consensus 98 V~~~LqeLe~~l~~lsn~Ts~~~~~i~~Iq~slk~~Q~ 135 (464)
T 1m1j_B 98 VKPVLRDLKDRVAKFSDTSTTMYQYVNMIDNKLVKTQK 135 (464)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHhHHHHHHHHHHHHhhhhhHHHHHHHHHHHHhhcccc
Confidence 34444555544444433334444444555555555553
No 258
>3ldz_A STAM-1, signal transducing adapter molecule 1; ubiquitin-binding, cytoplasm, UBL conjugation, endosome, membrane, protein transport, SH3 domain; 2.60A {Homo sapiens} SCOP: a.118.9.0
Probab=36.55 E-value=83 Score=28.34 Aligned_cols=69 Identities=9% Similarity=0.112 Sum_probs=51.7
Q ss_pred ccHHHHHhhcCCCCHHHHHHHHHHHHHHh--cChhHHHHHHhccHHHHHHHHhcCCCHHHHHHHHHHHHHhh
Q 006114 491 GGQLLAKTASKTDDPQTLRMVAGALANLC--GNEKLHTMLEEDGAIKALLAMVRSGNIDVIAQVARGLANFA 560 (660)
Q Consensus 491 ~I~~Ll~LL~~s~d~~v~~~Aa~aLanLa--~~~~~r~~iv~~G~V~~Lv~lL~s~~~~v~~~Al~aLanLA 560 (660)
++..+..-|. +.+|.++..|+..|-.+. ..+..+..+.....+..|+.++...++.|+..++..|...+
T Consensus 43 a~rai~Krl~-~~n~~~ql~AL~LLe~~vkNcG~~f~~evas~~Fl~el~~l~~~~~~~Vk~kil~li~~W~ 113 (140)
T 3ldz_A 43 CLRSIMRRVN-HKDPHVAMQALTLLGACVSNCGKIFHLEVCSRDFASEVSNVLNKGHPKVCEKLKALMVEWT 113 (140)
T ss_dssp HHHHHHHHHT-CSSHHHHHHHHHHHHHHHHHSCHHHHHHHSSHHHHHHHHHHHHHSCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHc-CCChHHHHHHHHHHHHHHHhcCHHHHHHHhhHHHHHHHHHHhccCCHHHHHHHHHHHHHHH
Confidence 3455555565 368888888877776666 44666777777788888888888889999999998887665
No 259
>1gk4_A Vimentin; intermediate filament, dimer, parallel coiled coil, heptad repeat, stutter; 2.3A {Homo sapiens} SCOP: h.1.20.1
Probab=36.43 E-value=1.8e+02 Score=23.87 Aligned_cols=28 Identities=7% Similarity=0.242 Sum_probs=19.3
Q ss_pred hhhhHHHHHHhhHHHHHHHHHHHHhhhh
Q 006114 222 MENSTYQKALADTTQLYEKKIAELNKKL 249 (660)
Q Consensus 222 ~~~~~~~~~l~~~~~~~~~~~~~~~~~~ 249 (660)
.-|.++..+|+||.+-|+..+..++..+
T Consensus 8 ~~~~sLE~~l~e~e~~~~~~~~~~q~~i 35 (84)
T 1gk4_A 8 GTNESLERQMREMEENFAVEAANYQDTI 35 (84)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4567777788888888877666555444
No 260
>3a7p_A Autophagy protein 16; coiled-coil, coiled coil, cytoplasmic vesicle, protein transport, transport, vacuole; 2.80A {Saccharomyces cerevisiae}
Probab=35.67 E-value=1.4e+02 Score=27.65 Aligned_cols=58 Identities=14% Similarity=0.125 Sum_probs=25.5
Q ss_pred HHHhhHHHHHHHHHHHHHHHHHHhhhhchHHHHHHHHHHHhhhhhhHHHHhhhhhHHH
Q 006114 171 LADTTQMYEKKITELIKQLEIEHARSEGAEEQVDTMKKLISDNQKSIEQYEMENSTYQ 228 (660)
Q Consensus 171 ~~~~~~~~~~~~~~l~~~l~~e~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~ 228 (660)
|..+...++.+|..+.-.+..-........||+..|..+++.........+.||..+-
T Consensus 73 L~~El~~l~~ki~dLeeel~eK~K~~e~l~DEl~aLqlq~n~lE~kl~kLq~EN~~LV 130 (152)
T 3a7p_A 73 LQKELKSKEQEIRRLKEVIALKNKNTERLNAALISGTIENNVLQQKLSDLKKEHSQLV 130 (152)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3333344444444444333333333334445555454444444444444446665543
No 261
>3cve_A Homer protein homolog 1; coiled coil, alternative splicing, cell junction, cytoplasm, membrane, postsynaptic cell membrane, synapse; 1.75A {Rattus norvegicus}
Probab=34.35 E-value=1.8e+02 Score=23.50 Aligned_cols=31 Identities=19% Similarity=0.237 Sum_probs=23.3
Q ss_pred HHHHHHHHHhhhhchHHHHHHHHHHHhhhhh
Q 006114 185 LIKQLEIEHARSEGAEEQVDTMKKLISDNQK 215 (660)
Q Consensus 185 l~~~l~~e~~~~~~~~~~~~~l~~~l~~~~~ 215 (660)
+-..|+.--.++..++++|..|+..|.+++-
T Consensus 5 ~~~kLq~~E~~N~~Le~~v~~le~~Le~s~~ 35 (72)
T 3cve_A 5 SHMKLQEVEIRNKDLEGQLSEMEQRLEKSQS 35 (72)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhhHHHHHHHHHHHHHHHHHH
Confidence 3445566666777888888889998888883
No 262
>1zoq_C CREB-binding protein, interferon regulatory factor 3; transcription regulation, transferase, transcription/transferase complex; 2.37A {Homo sapiens} SCOP: a.153.1.1 PDB: 1jjs_A
Probab=34.00 E-value=27 Score=25.58 Aligned_cols=34 Identities=24% Similarity=0.323 Sum_probs=29.4
Q ss_pred CcHHHHHHHHhcCChHHHHHHHHHHHhcCcchhh
Q 006114 623 GGAKELVQISIESSREDIRNLAKKTMKSNPRLQA 656 (660)
Q Consensus 623 G~l~~Lv~lL~s~s~~~ir~~A~~~L~~~p~~~~ 656 (660)
+++..|++-+++++.+.-...+..+|.+||.+-+
T Consensus 1 ~aLqqLl~tlksp~sp~qqqqvl~ILksnPqLMA 34 (47)
T 1zoq_C 1 SALQDLLRTLKSPSSPQQQQQVLNILKSNPQLMA 34 (47)
T ss_dssp CHHHHHHHTCCSCCCHHHHHHHHHHHHTCHHHHH
T ss_pred CHHHHHHHHhcCCCCHHHHHHHHHHHHcCHHHHH
Confidence 3577889999999999999999999999998754
No 263
>1mhq_A ADP-ribosylation factor binding protein GGA2; super helix, protein transport; 2.20A {Homo sapiens} SCOP: a.118.9.2
Probab=33.90 E-value=1.3e+02 Score=27.44 Aligned_cols=73 Identities=15% Similarity=-0.049 Sum_probs=54.6
Q ss_pred cHHHHHHHHhcCCCHHHHHHHHHHHHHhhccchhhhhhcchhhhHHHhhcChHHHHHHhhcC------CCHHHHHHHHHH
Q 006114 532 GAIKALLAMVRSGNIDVIAQVARGLANFAKCESRAIVQGQRKGRSHLMEDSALEWLIANSKT------NSASTRRHVELA 605 (660)
Q Consensus 532 G~V~~Lv~lL~s~~~~v~~~Al~aLanLA~~~~~~~aq~~~e~r~~Li~~G~v~~Lv~lL~s------~d~~vr~~Aa~A 605 (660)
.++.+|..-+.++++.++..|+..|-.+..... ...+..+.....+..|+.++.. .+..|+..+...
T Consensus 38 ~a~rai~krl~~~n~~vql~AL~LLe~~vkNCG-------~~fh~evas~~Fl~eL~kl~~~k~~~~~~~~~Vk~kil~l 110 (148)
T 1mhq_A 38 HAPWLLAHKIQSPQEKEALYALTVLEMCMNHCG-------EKFHSEVAKFRFLNELIKVLSPKYLGSWATGKVKGRVIEI 110 (148)
T ss_dssp HHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHSC-------HHHHHHHTSHHHHHHHHHTTCCSTTSCCCCHHHHHHHHHH
T ss_pred HHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHcC-------HHHHHHHhhHHHHHHHHHHHccccCCCCCCHHHHHHHHHH
Confidence 356677788889999999999999988875432 2233446667788888888864 478899988888
Q ss_pred HHHhhc
Q 006114 606 LCHLAQ 611 (660)
Q Consensus 606 L~nLa~ 611 (660)
+...+.
T Consensus 111 i~~W~~ 116 (148)
T 1mhq_A 111 LFSWTV 116 (148)
T ss_dssp HHHHHH
T ss_pred HHHHHH
Confidence 877764
No 264
>3he5_A Synzip1; heterodimeric coiled-coil, de novo protein; 1.75A {Artificial gene}
Probab=33.62 E-value=1.3e+02 Score=21.47 Aligned_cols=16 Identities=50% Similarity=0.659 Sum_probs=12.6
Q ss_pred HHHHHHHHHHHhhhhh
Q 006114 235 TQLYEKKIAELNKKLE 250 (660)
Q Consensus 235 ~~~~~~~~~~~~~~~~ 250 (660)
.--.||.||-|.|++|
T Consensus 33 iaylekeianlrkkie 48 (49)
T 3he5_A 33 IAYLEKEIANLRKKIE 48 (49)
T ss_dssp HHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHHhc
Confidence 3356899999999886
No 265
>1dh3_A Transcription factor CREB; protein-DNA complex, transcription/DNA complex; HET: DNA; 3.00A {Mus musculus} SCOP: h.1.3.1
Probab=33.59 E-value=36 Score=25.97 Aligned_cols=31 Identities=26% Similarity=0.371 Sum_probs=25.0
Q ss_pred HHhhhhhhhHHHHhhhhHHHHHHHHHhhhhh
Q 006114 105 MRNLVTRSEFLEKENAHLELEVEKILGELNH 135 (660)
Q Consensus 105 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 135 (660)
+..|+.+...|+.||..|..++..|...+.+
T Consensus 24 ~~~LE~~v~~L~~eN~~L~~~~~~L~~~~~~ 54 (55)
T 1dh3_A 24 VKSLENRVAVLENQNKTLIEELKALKDLYSH 54 (55)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHTTSTT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc
Confidence 3457788888999999999999988876644
No 266
>3g2s_A C-terminal fragment of sortilin-related receptor; ADP-ribosylation factor binding protein GGA1, VHS, acidic- cluster dileucine signal, sorla; 1.70A {Homo sapiens} SCOP: a.118.9.2 PDB: 3g2t_A* 3g2u_A 3g2v_A* 3g2w_A 1ujk_A* 1jwf_A 1ujj_A 1jwg_A* 1py1_A*
Probab=33.55 E-value=68 Score=29.43 Aligned_cols=69 Identities=9% Similarity=0.041 Sum_probs=54.3
Q ss_pred HHHHHHhhCCCCHHHHHHHHHHHHHhhC--CchhHHHHHHcCCHHHHHHHHcc-----CCCHHHHHHHHHHHHHhh
Q 006114 409 LPKILQLLTSEDPDVQIHAVKVVANLAA--EDINQEKIVEEGGLDALLLLLRT-----SQNTTILRVASGAIANLA 477 (660)
Q Consensus 409 I~~LV~LL~s~d~~vr~~Aa~aL~nLa~--~~en~~~Ive~GgI~~Lv~LL~~-----s~d~~v~~~Aa~AL~nLA 477 (660)
+..|..-+.+.++.++..|+.+|-.|.. .+.....|.....+..|+.++.. .+++.|+..+..+|..-+
T Consensus 50 ~ral~krl~~~n~~v~l~AL~LLe~cvkNCG~~fh~eias~~Fl~eL~kl~~~k~~~~~~~~~Vk~kil~li~~W~ 125 (149)
T 3g2s_A 50 TRLLAHKIQSPQEWEAIQALTVLETCMKSCGKRFHDEVGKFRFLNELIKVVSPKYLGSRTSEKVKNKILELLYSWT 125 (149)
T ss_dssp HHHHHHHHTCSSHHHHHHHHHHHHHHHHHCCHHHHHHHTSHHHHHHHHHHHCTTTTGGGSCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHcCCCHHHHHHHHHHHHHHHHhcCHHHHHHHhhHHHHHHHHHHHcccccCCCCCHHHHHHHHHHHHHHH
Confidence 5566677789999999999999988887 45566777777788889999863 257888888888877664
No 267
>3qh9_A Liprin-beta-2; coiled-coil, dimerization, structural protein; 2.01A {Homo sapiens}
Probab=33.53 E-value=1.9e+02 Score=23.84 Aligned_cols=20 Identities=25% Similarity=0.159 Sum_probs=11.4
Q ss_pred hhhhHHHHHHHHHHHhhhhh
Q 006114 139 QNNLKREKIVQLEISLKNSK 158 (660)
Q Consensus 139 ~~~~~~~~~~~~~~~~~~~~ 158 (660)
..+.|..+..|-|..||.++
T Consensus 34 kv~elEnErlQyEkKLKsTK 53 (81)
T 3qh9_A 34 KVEELENERNQYEWKLKATK 53 (81)
T ss_dssp HHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHhhhH
Confidence 34455555666666666555
No 268
>2jee_A YIIU; FTSZ, septum, coiled-coil, cell division, cell cycle, hypothetical protein; 2.8A {Escherichia coli}
Probab=33.46 E-value=2e+02 Score=23.70 Aligned_cols=42 Identities=14% Similarity=0.166 Sum_probs=27.5
Q ss_pred HHHHhhhhhhhHHHHhhhhHHHHHHHHHhhhhhhhhhhhhHH
Q 006114 103 ESMRNLVTRSEFLEKENAHLELEVEKILGELNHQKDQNNLKR 144 (660)
Q Consensus 103 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 144 (660)
|.+-.|+.|+..+....+.|..|+++|+-.+..=...+..++
T Consensus 6 ElleqLE~KIq~avdtI~lLqmEieELKekN~~L~~e~~e~~ 47 (81)
T 2jee_A 6 EVFEKLEAKVQQAIDTITLLQMEIEELKEKNNSLSQEVQNAQ 47 (81)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 455667777777777777777777777766655444444433
No 269
>1h7c_A Tubulin-specific chaperone A; protein folding, cofactor A; 1.8A {Homo sapiens} SCOP: a.7.5.1
Probab=32.91 E-value=2.4e+02 Score=24.36 Aligned_cols=88 Identities=17% Similarity=0.286 Sum_probs=52.4
Q ss_pred HHHHhhHHHHHHHHHHHHHHHHHHhhhhchHHHHHHHHHHHhhhhhhHHHHhhhhhHHHHHHhhHHHHHHHHHHHHhhhh
Q 006114 170 VLADTTQMYEKKITELIKQLEIEHARSEGAEEQVDTMKKLISDNQKSIEQYEMENSTYQKALADTTQLYEKKIAELNKKL 249 (660)
Q Consensus 170 ~~~~~~~~~~~~~~~l~~~l~~e~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~ 249 (660)
-|.++...|++|+..-...++.=++...- +-.+.+-+..|.+++ .+|-|+.+-.+.-+..|..-|
T Consensus 18 RL~KE~~~Y~kE~~~q~~riek~k~e~~D-ey~iKkq~evl~Et~--------------~mipd~~~Rl~~a~~~L~~~l 82 (108)
T 1h7c_A 18 RLVKERVMYEKEAKQQEEKIEKMRAEDGE-NYDIKKQAEILQESR--------------MMIPDCQRRLEAAYLDLQRIL 82 (108)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHCS-CTHHHHHHHHHHHHH--------------TTHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhcCCC-HHHHHHHHHHHHHHH--------------HhhhHHHHHHHHHHHHHHHHH
Confidence 46777778888877777666664432110 123333333444444 566777777788888888888
Q ss_pred hhhhhhhhhhHHhHHHHHHHhhhhh
Q 006114 250 EDEHACFEGAVEQLDMVKKLLSDYQ 274 (660)
Q Consensus 250 ~~~~~~~~~~~~~~~~~~~~~~~~~ 274 (660)
+.+-+- .-.+++..++..|.+..
T Consensus 83 ~~e~~~--~~~ee~~~Ake~l~~a~ 105 (108)
T 1h7c_A 83 ENEKDL--EEAEEYKEARLVLDSVK 105 (108)
T ss_dssp HHCGGG--TTSHHHHHHHHHHHHHH
T ss_pred HhcccC--CCcHHHHHHHHHHHHHH
Confidence 755222 22466667777766543
No 270
>3i00_A HIP-I, huntingtin-interacting protein 1; transcription; 2.30A {Homo sapiens} PDB: 2qa7_A
Probab=32.79 E-value=1.2e+02 Score=26.82 Aligned_cols=40 Identities=18% Similarity=0.193 Sum_probs=17.5
Q ss_pred hHHHHHHHHHHHHHHHHHHhh----hhchHHHHHHHHHHHhhhh
Q 006114 175 TQMYEKKITELIKQLEIEHAR----SEGAEEQVDTMKKLISDNQ 214 (660)
Q Consensus 175 ~~~~~~~~~~l~~~l~~e~~~----~~~~~~~~~~l~~~l~~~~ 214 (660)
|-++-.+|..|+..|+.=+.. -..+..+++.|+..|.+..
T Consensus 17 Ie~Lkreie~lk~ele~l~~E~q~~v~ql~~~i~~Le~eL~e~r 60 (120)
T 3i00_A 17 IERLYREISGLKAQLENMKTESQRVVLQLKGHVSELEADLAEQQ 60 (120)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334444455544444433222 1334444444554444444
No 271
>2no2_A HIP-I, huntingtin-interacting protein 1; clathrin light chain binding, HIP1 coiled-coil domain, endocytosis, clathrin SELF-assembly, cell adhesion; 2.80A {Homo sapiens}
Probab=32.62 E-value=2.4e+02 Score=24.32 Aligned_cols=22 Identities=14% Similarity=0.143 Sum_probs=10.9
Q ss_pred ccccchhHHHHHHHHHHHHHHH
Q 006114 275 NSNQGQKEVHELCVKLKETRQL 296 (660)
Q Consensus 275 ~~~~~~~e~~~Lk~~Le~e~~~ 296 (660)
...+..+++...++.|++....
T Consensus 19 ~~~q~~~e~e~~k~eL~~~~~~ 40 (107)
T 2no2_A 19 MARQAQVDLEREKKELEDSLER 40 (107)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 4444445555555555554444
No 272
>3qh9_A Liprin-beta-2; coiled-coil, dimerization, structural protein; 2.01A {Homo sapiens}
Probab=31.52 E-value=1.9e+02 Score=23.77 Aligned_cols=49 Identities=18% Similarity=0.287 Sum_probs=29.4
Q ss_pred hHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHhhhhccHHHHHHH
Q 006114 281 KEVHELCVKLKETRQLHESAVYEVQTLKSEYKNLLEEKETMSDELQAAR 329 (660)
Q Consensus 281 ~e~~~Lk~~Le~e~~~~e~~e~E~~~lks~l~~l~~~~~~~~eel~~~~ 329 (660)
+|+..|+-.++.+-.++-.-|-.+...|..+..|+..-.+.+.|+.+++
T Consensus 26 qEi~~Lr~kv~elEnErlQyEkKLKsTK~El~~Lq~qLe~kd~ei~rL~ 74 (81)
T 3qh9_A 26 QELRHLKIKVEELENERNQYEWKLKATKAEVAQLQEQVALKDAEIERLH 74 (81)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHhhHHHHHHHH
Confidence 4566666666665555555555566666666666665555556655543
No 273
>2jee_A YIIU; FTSZ, septum, coiled-coil, cell division, cell cycle, hypothetical protein; 2.8A {Escherichia coli}
Probab=31.40 E-value=2.2e+02 Score=23.48 Aligned_cols=49 Identities=18% Similarity=0.186 Sum_probs=30.2
Q ss_pred hhHHHHHHhhHHHHHHHHHHHHHHHH-------HHhhhhchHHHHHHHHHHHhhhh
Q 006114 166 SYQKVLADTTQMYEKKITELIKQLEI-------EHARSEGAEEQVDTMKKLISDNQ 214 (660)
Q Consensus 166 ~~~~~~~~~~~~~~~~~~~l~~~l~~-------e~~~~~~~~~~~~~l~~~l~~~~ 214 (660)
.+...+-+||+-+.-+|.+|+-.-.. =++.+..+..++..|+.....|+
T Consensus 13 ~KIq~avdtI~lLqmEieELKekN~~L~~e~~e~~~~~~~L~~en~qLk~E~~~wq 68 (81)
T 2jee_A 13 AKVQQAIDTITLLQMEIEELKEKNNSLSQEVQNAQHQREELERENNHLKEQQNGWQ 68 (81)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHH
Confidence 34455667777777777777654322 22334446667777777777776
No 274
>3o2t_A Symplekin; heat repeat, scaffold, protein binding; 1.40A {Homo sapiens} PDB: 3odr_A 3ods_A 4h3k_A* 3o2s_A 3o2q_A* 4h3h_A*
Probab=31.22 E-value=1.1e+02 Score=32.58 Aligned_cols=104 Identities=15% Similarity=0.128 Sum_probs=64.5
Q ss_pred ccHHHHHHHHhcCCCHHHHHHHHHHHHHhhccchhhhhhcchhhhHHHhhcChHHHHHHhhcCCCHHHHHHHHHHHHHh-
Q 006114 531 DGAIKALLAMVRSGNIDVIAQVARGLANFAKCESRAIVQGQRKGRSHLMEDSALEWLIANSKTNSASTRRHVELALCHL- 609 (660)
Q Consensus 531 ~G~V~~Lv~lL~s~~~~v~~~Al~aLanLA~~~~~~~aq~~~e~r~~Li~~G~v~~Lv~lL~s~d~~vr~~Aa~AL~nL- 609 (660)
...++.++.+....+.+++..++..|...|..+.+ + -..+++.|..++.+.++.|.+.+..+.+++
T Consensus 62 ~~fl~~il~f~~d~~~~vRk~~a~FieEa~~~~~e------------l-~~~~l~~L~~LL~d~d~~V~K~~I~~~tslY 128 (386)
T 3o2t_A 62 DNFLDEIIAFQADKSIEVRKFVIGFIEEACKRDIE------------L-LLKLIANLNMLLRDENVNVVKKAILTMTQLY 128 (386)
T ss_dssp GGGHHHHHGGGGCSCHHHHHHHHHHHHHHHHHCGG------------G-HHHHHHHHHHHHTCSSHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhccCCcHHHHHHHHHHHHHHHHHHHH------------H-HHHHHHHHHHHHcCCCHHHHHHHHHHHHHHH
Confidence 36788888888888899999999999887753322 1 134677888888888888887777766654
Q ss_pred -------hcCCcc---HHHHHh--cCcHHHHHHHHhcCChHHHHHHHHHHH
Q 006114 610 -------AQNEDN---ARDFIS--RGGAKELVQISIESSREDIRNLAKKTM 648 (660)
Q Consensus 610 -------a~~~e~---~~~Ive--~G~l~~Lv~lL~s~s~~~ir~~A~~~L 648 (660)
|.++.. ...+++ ...-..++.+.. ..+..+|-.|.+.+
T Consensus 129 pl~f~~i~~~~~~~~~~e~~W~~m~~lK~~Il~~~d-s~n~GVrl~aiKFl 178 (386)
T 3o2t_A 129 KVALQWMVKSRVISELQEACWDMVSAMAGDIILLLD-SDNDGIRTHAIKFV 178 (386)
T ss_dssp HHHHHHHHHC-CCCHHHHHHHHHHHHHHHHHHHGGG-CSSHHHHHHHHHHH
T ss_pred HHHHHHHhcCCCcchhHHHHHHHHHHHHHHHHHHhc-cCCcchHHHHHHHH
Confidence 223321 122332 223344455443 34556666666533
No 275
>3cvf_A Homer-3, homer protein homolog 3; coiled coil, alternative splicing, cell junction, cytoplasm, membrane, phosphoprotein, polymorphism; 2.90A {Homo sapiens}
Probab=31.07 E-value=1e+02 Score=25.35 Aligned_cols=34 Identities=15% Similarity=0.251 Sum_probs=23.2
Q ss_pred HHHHHHHHHHHHHhhhhchHHHHHHHHHHHhhhh
Q 006114 181 KITELIKQLEIEHARSEGAEEQVDTMKKLISDNQ 214 (660)
Q Consensus 181 ~~~~l~~~l~~e~~~~~~~~~~~~~l~~~l~~~~ 214 (660)
+-.++-..|++--.++..++++|..|+..|.+++
T Consensus 7 e~e~~~~klq~~E~rN~~Le~~v~~le~~Le~s~ 40 (79)
T 3cvf_A 7 EREETQQKVQDLETRNAELEHQLRAMERSLEEAR 40 (79)
T ss_dssp ---CTTHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHH
Confidence 3344455566666677778888888888888888
No 276
>3iox_A AGI/II, PA; alpha helix, PPII helix, supersandwich fold, surface adhesin WALL, peptidoglycan-anchor, cell adhesion; HET: PMS; 1.80A {Streptococcus mutans} PDB: 3ipk_A* 1jmm_A
Probab=30.97 E-value=3.3e+02 Score=29.79 Aligned_cols=37 Identities=35% Similarity=0.423 Sum_probs=31.3
Q ss_pred hhhhhhHHHHhhhhhHHHHHHhhHHHHHHHHHHHHhh
Q 006114 211 SDNQKSIEQYEMENSTYQKALADTTQLYEKKIAELNK 247 (660)
Q Consensus 211 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~ 247 (660)
.+.|...+.+|.|+...+++=+|..+.||++.++...
T Consensus 5 a~yq~~la~yq~elarvqkana~aka~Ye~~~ae~~a 41 (497)
T 3iox_A 5 ADYQAKLTAYQTELARVQKANADAKAAYEAAVAANNA 41 (497)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 3566667788888999999999999999999999986
No 277
>4atg_A TAF6; transcription, TFIID; HET: NHE; 1.89A {Antonospora locustae}
Probab=30.59 E-value=72 Score=30.74 Aligned_cols=127 Identities=8% Similarity=-0.032 Sum_probs=68.3
Q ss_pred HHHHHHhhC------CCCHHHHHHHHHHHHHhhCCchhHHHHHHcCCHHHHHHHHccCC--CHHHHHHHHHHHHHhhcCc
Q 006114 409 LPKILQLLT------SEDPDVQIHAVKVVANLAAEDINQEKIVEEGGLDALLLLLRTSQ--NTTILRVASGAIANLAMNE 480 (660)
Q Consensus 409 I~~LV~LL~------s~d~~vr~~Aa~aL~nLa~~~en~~~Ive~GgI~~Lv~LL~~s~--d~~v~~~Aa~AL~nLA~~~ 480 (660)
+|-++.++. ..|.........+...|..++...-...=.--+|+++.++-... ...+|..|+..|+.|+..-
T Consensus 42 lPyf~~fI~~~v~~nl~~l~~L~~lm~~~~ALl~N~~l~lepYlH~LipsvLtCll~k~l~~~~LRd~AA~lL~~I~~~~ 121 (196)
T 4atg_A 42 VPYFIQHISELILKSFKEAEVLKTCIALYFSLIKNKHVFIDPYLHQILPSLLTCVIGKSIVDDDVRKMSADIVKYIYDTY 121 (196)
T ss_dssp HHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHCTTCCCGGGHHHHHHHHHHHHHCTTCCCHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhccCCHHHHHHHHHHHHHHHcCCCCChHHHHHHHHHHHHHHHHhcccCHHHHHHHHHHHHHHHHHHh
Confidence 555554443 23566666666677677666543211111124788877774321 2279999999999998641
Q ss_pred hhHHHHHhcCccHHHHHhhcCC-CCHHHHHHHHHHHHHHhcChhHHHHHHhccHHHHHHHHh
Q 006114 481 MNQGLIMSRGGGQLLAKTASKT-DDPQTLRMVAGALANLCGNEKLHTMLEEDGAIKALLAMV 541 (660)
Q Consensus 481 ~n~~~Ive~g~I~~Ll~LL~~s-~d~~v~~~Aa~aLanLa~~~~~r~~iv~~G~V~~Lv~lL 541 (660)
.....-+...++..+...+.++ .+..+..-|..+|..+.. ..++.-.+|.+-.+.
T Consensus 122 ~~~y~~L~~RI~~tl~k~l~dp~~~l~t~YGAi~GL~~lG~------~~vr~~llP~l~~~~ 177 (196)
T 4atg_A 122 SRSYKTLAPRVLKTLKGVWMDPNRSEDSQYGALYCLSILSK------NVVNTVIREHAEEYK 177 (196)
T ss_dssp TTTSTTHHHHHHHHHHHHHTCTTSCHHHHHHHHHHHHHHCH------HHHHTHHHHHHHHHH
T ss_pred CccCchHHHHHHHHHHHHHcCCCCChHHHHHHHHHHHHhHH------HHHHHhhhcCHHHHH
Confidence 1111122233456666666553 344555555556655543 344444555554444
No 278
>3u59_A Tropomyosin beta chain; muscle contraction, actin, contractIle protein; 2.50A {Gallus gallus}
Probab=30.42 E-value=2.5e+02 Score=23.73 Aligned_cols=35 Identities=17% Similarity=0.168 Sum_probs=20.8
Q ss_pred HHHHHhhhhhhhhhhhhHHHHHHHHHHHhhhhhhh
Q 006114 126 VEKILGELNHQKDQNNLKREKIVQLEISLKNSKQQ 160 (660)
Q Consensus 126 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 160 (660)
|..+++.++--+.......++..++|..++...+.
T Consensus 4 md~iKkKm~~lk~e~e~a~d~ae~~e~~~k~~e~~ 38 (101)
T 3u59_A 4 MEAIKKKMQMLKLDKENAIDRAEQAEADKKQAEDR 38 (101)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45555555555555566667777776666655443
No 279
>1x8y_A Lamin A/C; structural protein, intermediate filament protein; 2.20A {Homo sapiens} SCOP: h.1.20.1 PDB: 3v5b_A 3v4w_A 3v4q_A
Probab=30.03 E-value=2.3e+02 Score=23.30 Aligned_cols=29 Identities=10% Similarity=0.091 Sum_probs=17.9
Q ss_pred hhhhHHHHHHhhHHHHHHHHHHHHhhhhh
Q 006114 222 MENSTYQKALADTTQLYEKKIAELNKKLE 250 (660)
Q Consensus 222 ~~~~~~~~~l~~~~~~~~~~~~~~~~~~~ 250 (660)
..|++....|+||-+.|+..+..++.++.
T Consensus 10 ~q~~~Le~~l~e~E~~~~~~l~~~q~~i~ 38 (86)
T 1x8y_A 10 CQLAAKEAKLRDLEDSLARERDTSRRLLA 38 (86)
T ss_dssp --CTTHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44556667777777777776666555444
No 280
>1gk6_A Vimentin; intermediate filament, dimer, parallel coiled coil, heptad repeat, leucine zipper, fusion protein; 1.9A {Saccharomyces cerevisiae} SCOP: h.1.20.1
Probab=29.99 E-value=1.5e+02 Score=22.65 Aligned_cols=26 Identities=23% Similarity=0.137 Sum_probs=21.0
Q ss_pred HHHHHHhhHHHHHHHHHHHHHHHHHH
Q 006114 168 QKVLADTTQMYEKKITELIKQLEIEH 193 (660)
Q Consensus 168 ~~~~~~~~~~~~~~~~~l~~~l~~e~ 193 (660)
++.|-+.+..++.||+--++.||-|-
T Consensus 30 Yq~LlniK~~Le~EIatYRkLLEgEe 55 (59)
T 1gk6_A 30 VGDLLNVKMALDIEIATYRKLLEGEE 55 (59)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHCCC
T ss_pred HHHHHHHHHHhHHHHHHHHHHHccCc
Confidence 55677788889999999999998554
No 281
>4gkw_A Spindle assembly abnormal protein 6; double helix, SAS-5, centriole, structural protein; 3.30A {Caenorhabditis elegans}
Probab=29.00 E-value=3.2e+02 Score=24.53 Aligned_cols=41 Identities=32% Similarity=0.426 Sum_probs=31.0
Q ss_pred HHHHHHHHHHHHHHHHhhhhchHHHHHHHHHHHhhhhhhHHHHhhhhhHHHHHHh
Q 006114 178 YEKKITELIKQLEIEHARSEGAEEQVDTMKKLISDNQKSIEQYEMENSTYQKALA 232 (660)
Q Consensus 178 ~~~~~~~l~~~l~~e~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~l~ 232 (660)
+-..|.-|+|.||+|+ | ...+...|+....+||-....-|+
T Consensus 117 LT~TiG~LrKELEdEk------------l--K~~E~MdSFE~LkvENE~vkerl~ 157 (167)
T 4gkw_A 117 LTETIGILRKELENEK------------L--KAAENMDSFEKLSMENENLKEKIA 157 (167)
T ss_dssp HHHHHHHHHHHHHHHH------------H--HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHH------------H--HHHHHHHHHHHHhhhhHhHHHHHH
Confidence 3456777888888887 3 245778888888899988877776
No 282
>1jei_A Emerin; membrane protein; NMR {Synthetic} SCOP: a.140.1.1 PDB: 2odc_I 2odg_C
Probab=28.97 E-value=19 Score=27.45 Aligned_cols=18 Identities=44% Similarity=0.671 Sum_probs=14.1
Q ss_pred HhhHHHHHHHHHHHHhhh
Q 006114 231 LADTTQLYEKKIAELNKK 248 (660)
Q Consensus 231 l~~~~~~~~~~~~~~~~~ 248 (660)
.+-|...||||+.+|..+
T Consensus 26 t~sTRklYeKKL~~l~~~ 43 (53)
T 1jei_A 26 VGSTRRLYEKKIFEYETQ 43 (53)
T ss_dssp CSGGGHHHHHHHHHTTTT
T ss_pred CcccHHHHHHHHHHHHHc
Confidence 456889999999986543
No 283
>3c3g_A Alpha/beta peptide with the GCN4-PLI SIDE chain S AN (alpha-alpha-beta) backbone; helix bundle, foldamer, unknown function protein; HET: HMR B3Q B3D B3E B3L BIL B3K BAL GOL; 1.80A {Synthetic} PDB: 3heu_A* 3het_A* 3hev_A* 3hew_A* 3hey_A* 3hex_A* 3c3h_A*
Probab=28.68 E-value=98 Score=21.12 Aligned_cols=28 Identities=14% Similarity=0.080 Sum_probs=21.7
Q ss_pred HHHHHHHHHHHHHHHhHHHHHHHHHHHH
Q 006114 284 HELCVKLKETRQLHESAVYEVQTLKSEY 311 (660)
Q Consensus 284 ~~Lk~~Le~e~~~~e~~e~E~~~lks~l 311 (660)
..|+..+++-.+.+..++.|+.+||+=+
T Consensus 3 nQLEdKvEeLl~~~~~Le~EV~RLk~lL 30 (33)
T 3c3g_A 3 KXIEXKLXEIXSKXYHXENXLARIKXLL 30 (33)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHhhHHHHHHHHHHHHH
Confidence 3566777888888888888888888754
No 284
>1juq_A ADP-ribosylation factor binding protein GGA3; protein-peptide compelx, VHS domain, DXXLL sorting signal, signaling protein; 2.20A {Homo sapiens} SCOP: a.118.9.2 PDB: 1jpl_A 1lf8_A*
Probab=28.68 E-value=1.7e+02 Score=27.32 Aligned_cols=72 Identities=18% Similarity=0.024 Sum_probs=53.9
Q ss_pred HHHHHHHHhcCCCHHHHHHHHHHHHHhhccchhhhhhcchhhhHHHhhcChHHHHHHhhcC------CCHHHHHHHHHHH
Q 006114 533 AIKALLAMVRSGNIDVIAQVARGLANFAKCESRAIVQGQRKGRSHLMEDSALEWLIANSKT------NSASTRRHVELAL 606 (660)
Q Consensus 533 ~V~~Lv~lL~s~~~~v~~~Al~aLanLA~~~~~~~aq~~~e~r~~Li~~G~v~~Lv~lL~s------~d~~vr~~Aa~AL 606 (660)
++.+|..-+.+.++.++..|+..|-.+..... ...+..+.....+..|+.++.. .+..|+..+...+
T Consensus 51 A~ral~krl~~~n~~vql~AL~LLd~~vkNCG-------~~Fh~evas~~Fl~eL~kl~~~k~~~~~~~~~Vk~kil~li 123 (171)
T 1juq_A 51 AVRLLAHKIQSPQEWEALQALTVLEACMKNCG-------RRFHNEVGKFRFLNELIKVVSPKYLGDRVSEKVKTKVIELL 123 (171)
T ss_dssp HHHHHHHHHTCSSHHHHHHHHHHHHHHHHHSH-------HHHHHHHTSHHHHHHHHHHHCCCCCCTTSCHHHHHHHHHHH
T ss_pred HHHHHHHHhcCCCHHHHHHHHHHHHHHHHHcC-------HHHHHHHhhHHHHHHHHHHhccccCCCCCCHHHHHHHHHHH
Confidence 56677788889999999999999988875432 2233445667778888888763 3688999988888
Q ss_pred HHhhc
Q 006114 607 CHLAQ 611 (660)
Q Consensus 607 ~nLa~ 611 (660)
...+.
T Consensus 124 ~~W~~ 128 (171)
T 1juq_A 124 YSWTM 128 (171)
T ss_dssp HHHHH
T ss_pred HHHHH
Confidence 87764
No 285
>1m1j_B Fibrinogen beta chain; coiled coils, disulfide rings, fibrinogen, blood clotting; HET: NDG NAG; 2.70A {Gallus gallus} SCOP: d.171.1.1 h.1.8.1 PDB: 1ei3_B*
Probab=28.67 E-value=5.7e+02 Score=27.74 Aligned_cols=12 Identities=33% Similarity=0.553 Sum_probs=5.2
Q ss_pred HHHHHHHHhhhh
Q 006114 238 YEKKIAELNKKL 249 (660)
Q Consensus 238 ~~~~~~~~~~~~ 249 (660)
+..||..|...+
T Consensus 180 l~~ki~~l~~~~ 191 (464)
T 1m1j_B 180 LHKKIQKLENAI 191 (464)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHH
Confidence 444444444433
No 286
>3trt_A Vimentin; cytoskeleton, intermediate filament, alpha-helix, structural protein; 2.30A {Homo sapiens} PDB: 3klt_A*
Probab=28.04 E-value=2.1e+02 Score=22.71 Aligned_cols=56 Identities=23% Similarity=0.335 Sum_probs=0.0
Q ss_pred HHHHHhhHHHHHHHHHHHHhhhhhhhhhhhhhhHHhHHHHHHHhhhhhccccchhHHHHHHHHHHHHHHHHHhHHHHHHH
Q 006114 227 YQKALADTTQLYEKKIAELNKKLEDEHACFEGAVEQLDMVKKLLSDYQNSNQGQKEVHELCVKLKETRQLHESAVYEVQT 306 (660)
Q Consensus 227 ~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~Lk~~Le~e~~~~e~~e~E~~~ 306 (660)
..+--+++-..|..|+.+|..... ...+++...+..+-+.+....+++-|+..
T Consensus 22 a~knr~EaE~~y~~k~eel~~~~~---------------------------~~~~~l~~~k~Ei~elrr~iq~L~~el~s 74 (77)
T 3trt_A 22 AAKNLQEAEEWYKSKFADLSEAAN---------------------------RNNDALRQAKQESTEYRRQVQSLTMEVDA 74 (77)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHH---------------------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHhHHHHHHHHHHHHHHHHHHHH---------------------------hhHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q ss_pred HHH
Q 006114 307 LKS 309 (660)
Q Consensus 307 lks 309 (660)
+|+
T Consensus 75 lk~ 77 (77)
T 3trt_A 75 LKG 77 (77)
T ss_dssp HHC
T ss_pred hcC
No 287
>1deb_A APC protein, adenomatous polyposis coli protein; coiled coil, tumor suppressor, structural protein; 2.40A {Homo sapiens} SCOP: h.1.18.1
Probab=27.40 E-value=1.3e+02 Score=22.51 Aligned_cols=23 Identities=35% Similarity=0.416 Sum_probs=18.6
Q ss_pred hhhhhhHHHHhhhhHHHHHHHHH
Q 006114 108 LVTRSEFLEKENAHLELEVEKIL 130 (660)
Q Consensus 108 ~~~~~~~~~~~~~~~~~~~~~~~ 130 (660)
|+.+.|-|.+||++|..|+++=-
T Consensus 8 L~~QVe~Lk~ENshLrrEL~dNS 30 (54)
T 1deb_A 8 LLKQVEALKMENSNLRQELEDNS 30 (54)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhhHHHHHHHhhH
Confidence 56788899999999998876533
No 288
>3swy_A Cyclic nucleotide-gated cation channel alpha-3; coiled-coil, assembly domain, transport protein; 1.90A {Homo sapiens}
Probab=27.27 E-value=1.6e+02 Score=21.64 Aligned_cols=35 Identities=17% Similarity=0.200 Sum_probs=26.2
Q ss_pred chHHHHHHHHHHHhhhhhhHHHHhhhhhHHHHHHh
Q 006114 198 GAEEQVDTMKKLISDNQKSIEQYEMENSTYQKALA 232 (660)
Q Consensus 198 ~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~l~ 232 (660)
.+|+.++.|+..+..+|-.++..-.|..+.|..|-
T Consensus 2 dlEekv~~Le~~ld~LqTr~ArLlae~~ssq~KlK 36 (46)
T 3swy_A 2 ALEEKVEQLGSSLDTLQTRFARLLAEYNATQMKMK 36 (46)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 47899999999999999777766666665555444
No 289
>2oto_A M protein; helical coiled coil, fibrinogen-binding, virulence factor, S active protein, toxin; 3.04A {Streptococcus pyogenes serotype M1} PDB: 2xny_M
Probab=27.07 E-value=3.6e+02 Score=24.47 Aligned_cols=114 Identities=12% Similarity=0.097 Sum_probs=0.0
Q ss_pred hhhhhhhhhHHHHHHHHHHHhhhhhhhhhhhhhhHHHHHHhhHHHHHHHHHHHHHH----HHHHhhhhchHHHHHHHHHH
Q 006114 134 NHQKDQNNLKREKIVQLEISLKNSKQQQLDNSSYQKVLADTTQMYEKKITELIKQL----EIEHARSEGAEEQVDTMKKL 209 (660)
Q Consensus 134 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l----~~e~~~~~~~~~~~~~l~~~ 209 (660)
...+..+..+..+..++.-.+.......-+.-...+.|...++.+..+..++..+. +.+...+..+++++..-...
T Consensus 25 ~~l~~eN~~Lk~e~e~l~~~~~~~~~~~~eL~~~~~~Le~~n~~L~~~lke~~~~~~~l~ek~~~e~~~le~~L~e~~e~ 104 (155)
T 2oto_A 25 IRLRHENKDLKARLENAMEVAGRDFKRAEELEKAKQALEDQRKDLETKLKELQQDYDLAKESTSWDRQRLEKELEEKKEA 104 (155)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_pred HhhhhhhHHHHhhhhhHHHHHHhhHHHHHHHHHHHHhhhhhhhhhh
Q 006114 210 ISDNQKSIEQYEMENSTYQKALADTTQLYEKKIAELNKKLEDEHAC 255 (660)
Q Consensus 210 l~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~ 255 (660)
+...- ..-..|...+.--.+..+.+..++.++|++. +|
T Consensus 105 ~~~~l-------~~~~e~~~~~~~~~~e~~~~~~~~ek~ls~A-s~ 142 (155)
T 2oto_A 105 LELAI-------DQASRDYHRATALEKELEEKKKALELAIDQA-SQ 142 (155)
T ss_dssp HHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HH
T ss_pred HHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HH
No 290
>3swf_A CGMP-gated cation channel alpha-1; coiled-coil, assembly domain, transport protein; 2.14A {Bos taurus}
Probab=26.78 E-value=1.5e+02 Score=24.05 Aligned_cols=36 Identities=25% Similarity=0.255 Sum_probs=28.5
Q ss_pred hchHHHHHHHHHHHhhhhhhHHHHhhhhhHHHHHHh
Q 006114 197 EGAEEQVDTMKKLISDNQKSIEQYEMENSTYQKALA 232 (660)
Q Consensus 197 ~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~l~ 232 (660)
+.+|+.|+.|+..+..+|-.++..-.+..+.|..|-
T Consensus 3 ~dlEEKv~~LE~sld~LQTrfARLLaEy~ssQ~KLK 38 (74)
T 3swf_A 3 MGLEEKVTRMESSVDLLQTRFARILAEYESMQQKLK 38 (74)
T ss_dssp -CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 358899999999999999888777777777666665
No 291
>1dvp_A HRS, hepatocyte growth factor-regulated tyrosine kinase substrate; VHS, FYVE, zinc finger, superhelix, transferase; HET: CIT; 2.00A {Drosophila melanogaster} SCOP: a.118.9.2 g.50.1.1
Probab=26.26 E-value=63 Score=31.32 Aligned_cols=69 Identities=10% Similarity=0.193 Sum_probs=52.2
Q ss_pred HHHHHHhhCCCCHHHHHHHHHHHHHhhCC--chhHHHHHHcCCHHHHHHHHccCCCHHHHHHHHHHHHHhh
Q 006114 409 LPKILQLLTSEDPDVQIHAVKVVANLAAE--DINQEKIVEEGGLDALLLLLRTSQNTTILRVASGAIANLA 477 (660)
Q Consensus 409 I~~LV~LL~s~d~~vr~~Aa~aL~nLa~~--~en~~~Ive~GgI~~Lv~LL~~s~d~~v~~~Aa~AL~nLA 477 (660)
+..|..-|.+.++.++..|+.+|-.+..+ +.....|.....+..|+.++.+.+++.|+..++..+..-+
T Consensus 44 ~r~l~krl~~~n~~~~l~aL~Lle~~vkNcG~~f~~eva~~~fl~~l~~l~~~~~~~~Vk~kil~li~~W~ 114 (220)
T 1dvp_A 44 FAAIKKKMNSPNPHSSCYSLLVLESIVKNCGAPVHEEVFTKENCEMFSSFLESTPHENVRQKMLELVQTWA 114 (220)
T ss_dssp HHHHHHHHTCSSHHHHHHHHHHHHHHHHHSHHHHHHHHSSHHHHHHHHHHHHHCSCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHcCCCHHHHHHHHHHHHHHHhccCHHHHHHHHhHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHH
Confidence 45556667789999999999999888874 4456667666678888888876677888888777766554
No 292
>3c3f_A Alpha/beta peptide with the GCN4-PLI SIDE chain S AN (alpha-alpha-alpha-beta) backbone...; helix bundle, foldamer, unknown function, de novo protein; HET: B3K B3D B3E BIL B3L BAL; 2.00A {Synthetic} SCOP: h.1.3.1
Probab=26.22 E-value=1.1e+02 Score=20.91 Aligned_cols=28 Identities=11% Similarity=0.014 Sum_probs=21.5
Q ss_pred HHHHHHHHHHHHHHHhHHHHHHHHHHHH
Q 006114 284 HELCVKLKETRQLHESAVYEVQTLKSEY 311 (660)
Q Consensus 284 ~~Lk~~Le~e~~~~e~~e~E~~~lks~l 311 (660)
..|...+++-.+....++.|+.+||+=+
T Consensus 4 nQLEdKVEeLl~~~~~Le~EV~RLk~ll 31 (34)
T 3c3f_A 4 XQIEXKLEXILSXLYHXENEXARIXKLL 31 (34)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhhhhHHHHHHHHHHHHH
Confidence 4566777888888888888888888754
No 293
>3gs3_A Symplekin, LD45768P; helix-turn-helix heat repeat extended loop, transcription, protein binding; 2.40A {Drosophila melanogaster}
Probab=25.91 E-value=4.9e+02 Score=25.74 Aligned_cols=137 Identities=9% Similarity=0.069 Sum_probs=79.2
Q ss_pred HHHHHHHHHHHHhhcCchhHHHHHhcCccHHHHHhhcCCCCHHHHHHHHHHHHHHh-cChhHHHHHHhccHHHHHHHHhc
Q 006114 464 TILRVASGAIANLAMNEMNQGLIMSRGGGQLLAKTASKTDDPQTLRMVAGALANLC-GNEKLHTMLEEDGAIKALLAMVR 542 (660)
Q Consensus 464 ~v~~~Aa~AL~nLA~~~~n~~~Ive~g~I~~Ll~LL~~s~d~~v~~~Aa~aLanLa-~~~~~r~~iv~~G~V~~Lv~lL~ 542 (660)
+.+.....-+..|+.+.+.. .-..+++.++.+..+ .+..+++.++..|...| ..++. -..+++.|..++.
T Consensus 30 ~~kl~~L~qa~el~~~~dp~---ll~~~l~~il~~~~~-~~~~vrk~~~~Fi~e~~~~k~~l-----~~~~l~~L~~Ll~ 100 (257)
T 3gs3_A 30 STKCELLAKVQETVLGSCAE---LAEEFLESVLSLAHD-SNMEVRKQVVAFVEQVCKVKVEL-----LPHVINVVSMLLR 100 (257)
T ss_dssp HHHHHHHHHHHHHHTTTTGG---GHHHHHHHHHGGGGC-SCHHHHHHHHHHHHHHHHHCGGG-----HHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHHHccCHh---HHHHHHHHHHHhccC-ChHHHHHHHHHHHHHHHHHHHHH-----HHHHHHHHHHHHc
Confidence 34555555555555442211 113356677776644 78899999999998887 22322 2246778888888
Q ss_pred CCCHHHHHHHHHHHHHhhccchhhhhhc--chhhhHHHhh--cChHHHHHHhhcCCCHHHHHHHHHHHHHh
Q 006114 543 SGNIDVIAQVARGLANFAKCESRAIVQG--QRKGRSHLME--DSALEWLIANSKTNSASTRRHVELALCHL 609 (660)
Q Consensus 543 s~~~~v~~~Al~aLanLA~~~~~~~aq~--~~e~r~~Li~--~G~v~~Lv~lL~s~d~~vr~~Aa~AL~nL 609 (660)
..++.|...++.+.+++-..--+.++.. .+......++ ...-..++.+..+.+..+|.+|...+-.+
T Consensus 101 d~d~~V~K~~I~~~~~iY~~~l~~i~~~~~~~~~~~~~W~~m~~lK~~Il~~~~s~n~gvkl~~iKF~e~v 171 (257)
T 3gs3_A 101 DNSAQVIKRVIQACGSIYKNGLQYLCSLMEPGDSAEQAWNILSLIKAQILDMIDNENDGIRTNAIKFLEGV 171 (257)
T ss_dssp CSCHHHHHHHHHHHHHHHHHHHHHHTTSSSCCHHHHHHHHHHHHHHHHHHHGGGSSCHHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHHHHHHHHHHhcCCCCcchHHHHHHHHHHHHHHHHHHHccCCcchHHHHHHHHHHH
Confidence 8899999888888776531100111100 0000111111 12233555667778899999988887765
No 294
>1m1j_C Fibrinogen gamma chain; coiled coils, disulfide rings, fibrinogen, blood clotting; HET: NDG NAG; 2.70A {Gallus gallus} SCOP: d.171.1.1 h.1.8.1 PDB: 1ei3_C
Probab=25.91 E-value=2.6e+02 Score=29.93 Aligned_cols=45 Identities=11% Similarity=0.076 Sum_probs=28.7
Q ss_pred HHHHhhHHHHHHHHHHHHHHHHHHhhhhchHHHHHHHHHHHhhhh
Q 006114 170 VLADTTQMYEKKITELIKQLEIEHARSEGAEEQVDTMKKLISDNQ 214 (660)
Q Consensus 170 ~~~~~~~~~~~~~~~l~~~l~~e~~~~~~~~~~~~~l~~~l~~~~ 214 (660)
.+||+.-.+++.+..=+..||+-..+-...-.++..|.+.+.+..
T Consensus 24 ~i~d~L~k~e~~V~~~l~~LE~~l~elsn~ts~v~~Lvk~iq~~~ 68 (409)
T 1m1j_C 24 GIADFFNKYRLTTDGELLEIEGLLQQATNSTGSIEYLIQHIKTIY 68 (409)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHS
T ss_pred cHHHHHHHHHhcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 356666677766666666666655555555666667777666664
No 295
>1xaw_A Occludin; coiled-coil, cell adhesion; 1.45A {Homo sapiens} SCOP: h.4.17.1 PDB: 1wpa_A 3g7c_A
Probab=25.73 E-value=3.8e+02 Score=24.35 Aligned_cols=86 Identities=16% Similarity=0.359 Sum_probs=53.7
Q ss_pred HHHHHHHHHhhhhchHHHHHHHHHHHhhhhhhHHHHhhhhhHHHHHHhhHHHHHHHHHHHH--hhhhhhhhhhhhhhHHh
Q 006114 185 LIKQLEIEHARSEGAEEQVDTMKKLISDNQKSIEQYEMENSTYQKALADTTQLYEKKIAEL--NKKLEDEHACFEGAVEQ 262 (660)
Q Consensus 185 l~~~l~~e~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~ 262 (660)
-+..+.++-..+..++.+|...-+.+.++-....++......|+.+ .+.|.+ |.++ .--.-.+..||+-+-.-
T Consensus 50 YK~~F~~dy~EYk~Lhaev~~v~~~F~~Ld~~L~~l~~~s~e~~~i----~~EY~r-~k~~K~dp~y~ekK~Rc~yL~~K 124 (140)
T 1xaw_A 50 YKRNFDTGLQEYKSLQSVLDEINKELSRLDKELDDYREESEEYMAA----ADEYNR-LKQVKGSADYKSKKNHCKQLKSK 124 (140)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSCTTSHHHHHH----HHHHHH-HHHHHTSHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCHHHHHH----HHHHHH-HHHhcCCcHHHHHHHHHHHHHHH
Confidence 3455666667777777777766666666665554444333444432 345554 3222 11134566699999999
Q ss_pred HHHHHHHhhhhhc
Q 006114 263 LDMVKKLLSDYQN 275 (660)
Q Consensus 263 ~~~~~~~~~~~~~ 275 (660)
|.-+|++++++.+
T Consensus 125 LsHIK~lI~~YD~ 137 (140)
T 1xaw_A 125 LSHIKKMVGDYDR 137 (140)
T ss_dssp HHHHHHHHHHHHH
T ss_pred HHHHHHHHHhhhc
Confidence 9999999998854
No 296
>1dip_A Delta-sleep-inducing peptide immunoreactive peptide; structure, leucine zipper, PIG, acetylation; NMR {Sus scrofa} SCOP: h.1.12.1
Probab=25.61 E-value=32 Score=27.85 Aligned_cols=34 Identities=24% Similarity=0.291 Sum_probs=28.4
Q ss_pred chHHHHHHHHHHHhhhhhhHHHHhhhhhHHHHHH
Q 006114 198 GAEEQVDTMKKLISDNQKSIEQYEMENSTYQKAL 231 (660)
Q Consensus 198 ~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~l 231 (660)
+-++++..||.++.++...+.|.+.||+-+....
T Consensus 12 AVREEVevLKe~I~EL~e~~~qLE~EN~~Lk~~a 45 (78)
T 1dip_A 12 AVREEVEILKEQIRELVEKNSQLERENTLLKTLA 45 (78)
T ss_dssp TCTTSCHHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhC
Confidence 3468899999999999999999999998776543
No 297
>4atg_A TAF6; transcription, TFIID; HET: NHE; 1.89A {Antonospora locustae}
Probab=25.00 E-value=4.6e+02 Score=25.03 Aligned_cols=122 Identities=13% Similarity=0.065 Sum_probs=68.0
Q ss_pred CCHHHHHHHHHHHHHHhcChhHHHHHHhccHHHHHHHHhcC---CCHHHHHHHHHHHHHhhccchhhhhhcchhhhHHHh
Q 006114 503 DDPQTLRMVAGALANLCGNEKLHTMLEEDGAIKALLAMVRS---GNIDVIAQVARGLANFAKCESRAIVQGQRKGRSHLM 579 (660)
Q Consensus 503 ~d~~v~~~Aa~aLanLa~~~~~r~~iv~~G~V~~Lv~lL~s---~~~~v~~~Al~aLanLA~~~~~~~aq~~~e~r~~Li 579 (660)
.|..........+..|..|+...-..-=.-.+|.++.++-+ +...++..|+..|+.+|..-+... + -+
T Consensus 58 ~~l~~L~~lm~~~~ALl~N~~l~lepYlH~LipsvLtCll~k~l~~~~LRd~AA~lL~~I~~~~~~~y----~-----~L 128 (196)
T 4atg_A 58 KEAEVLKTCIALYFSLIKNKHVFIDPYLHQILPSLLTCVIGKSIVDDDVRKMSADIVKYIYDTYSRSY----K-----TL 128 (196)
T ss_dssp TCHHHHHHHHHHHHHHHHCTTCCCGGGHHHHHHHHHHHHHCTTCCCHHHHHHHHHHHHHHHHHHTTTS----T-----TH
T ss_pred CCHHHHHHHHHHHHHHHcCCCCChHHHHHHHHHHHHHHHHhcccCHHHHHHHHHHHHHHHHHHhCccC----c-----hH
Confidence 46666666666777776655432222222366776666532 223799999999999985322110 0 11
Q ss_pred hcChHHHHHHhhcCC--CHHHHHHHHHHHHHhhcCCccHHHHHhcCcHHHHHHHHhcCChHH
Q 006114 580 EDSALEWLIANSKTN--SASTRRHVELALCHLAQNEDNARDFISRGGAKELVQISIESSRED 639 (660)
Q Consensus 580 ~~G~v~~Lv~lL~s~--d~~vr~~Aa~AL~nLa~~~e~~~~Ive~G~l~~Lv~lL~s~s~~~ 639 (660)
...+...+.+.+.++ +....=.|...|..++. ..++.-++|.|-.+...-....
T Consensus 129 ~~RI~~tl~k~l~dp~~~l~t~YGAi~GL~~lG~------~~vr~~llP~l~~~~~~~~~~~ 184 (196)
T 4atg_A 129 APRVLKTLKGVWMDPNRSEDSQYGALYCLSILSK------NVVNTVIREHAEEYKRTIGKKK 184 (196)
T ss_dssp HHHHHHHHHHHHTCTTSCHHHHHHHHHHHHHHCH------HHHHTHHHHHHHHHHHHTCCHH
T ss_pred HHHHHHHHHHHHcCCCCChHHHHHHHHHHHHhHH------HHHHHhhhcCHHHHHHHHHHHH
Confidence 123344455555443 45556667777766654 3456656677766665544333
No 298
>1wt6_A Myotonin-protein kinase; coiled-coil, kinase activation, DMPK, molecular replacement, transferase; 1.60A {Homo sapiens}
Probab=24.97 E-value=2.9e+02 Score=22.75 Aligned_cols=34 Identities=21% Similarity=0.309 Sum_probs=28.3
Q ss_pred HHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHH
Q 006114 282 EVHELCVKLKETRQLHESAVYEVQTLKSEYKNLL 315 (660)
Q Consensus 282 e~~~Lk~~Le~e~~~~e~~e~E~~~lks~l~~l~ 315 (660)
++-+|.-.|+.+.+-+.+.-+|+...++....+.
T Consensus 11 ~~leLQSALeaEIqAKQ~i~EELs~vr~~ni~~e 44 (81)
T 1wt6_A 11 TLRELQEALEEEVLTRQSLSREMEAIRTDNQNFA 44 (81)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4468899999999999999999998888776544
No 299
>3vld_A DNA mismatch repair protein HSM3; heat repeat, RPT1, chaperone; HET: DNA; 2.05A {Saccharomyces cerevisiae} PDB: 3vle_A* 3vlf_A* 4a3v_A* 4a3t_A*
Probab=24.36 E-value=5e+02 Score=28.48 Aligned_cols=109 Identities=17% Similarity=0.164 Sum_probs=73.7
Q ss_pred HHHHcCCHHHHHHHHccCCCHHHHHHHHHHHHHhhcCchhHHHHHhcCccHHHHHhhcCCCCH-H-HHHHHHHHHHHHhc
Q 006114 443 KIVEEGGLDALLLLLRTSQNTTILRVASGAIANLAMNEMNQGLIMSRGGGQLLAKTASKTDDP-Q-TLRMVAGALANLCG 520 (660)
Q Consensus 443 ~Ive~GgI~~Lv~LL~~s~d~~v~~~Aa~AL~nLA~~~~n~~~Ive~g~I~~Ll~LL~~s~d~-~-v~~~Aa~aLanLa~ 520 (660)
.|.+.=.+.-++..|. +.++.+...||.+|. .+..+..+...+++..|+.++-+...+ . +....=.++..|+.
T Consensus 111 ~VLevysve~i~~aL~-S~~~~l~~~~ckVI~----~s~pk~lfa~t~iidiLL~lyFd~~t~i~~vvn~IE~~~~~Lss 185 (500)
T 3vld_A 111 DVLEVYSAEDLVKALR-SEIDPLKVAACRVIE----NSQPKGLFATSNIIDILLDILFDEKVENDKLITAIEKALERLST 185 (500)
T ss_dssp HHHHHSCHHHHHHHHT-SSCHHHHHHHHHHHH----TCSSGGGGTTSSHHHHHHHHHTCTTCCCHHHHHHHHHHHHHHTT
T ss_pred HHHHhCCHHHHHHHHh-cCChHHHHHHHHHhc----ccCchhHhccChHHHHHHHHHcCCCCCcHHHHHHHHHHHHHcCc
Confidence 4555557899999998 558888888999988 555677788899999999998764333 3 44444467778877
Q ss_pred ChhHHHHHHhccHHHHHHHHhcCCCHHHHHHHHHHHH
Q 006114 521 NEKLHTMLEEDGAIKALLAMVRSGNIDVIAQVARGLA 557 (660)
Q Consensus 521 ~~~~r~~iv~~G~V~~Lv~lL~s~~~~v~~~Al~aLa 557 (660)
+.=.+..+... ..|.+..+=++.++-+....+..+.
T Consensus 186 deLirrril~n-nl~lL~~vK~~~~~i~~sRLLdll~ 221 (500)
T 3vld_A 186 DELIRRRLFDN-NLPYLVSVKGRMETVSFVRLIDFLT 221 (500)
T ss_dssp SHHHHHHHHTT-THHHHHHHHHHCCHHHHHHHHHHHH
T ss_pred hHHHHHHHHHH-hHHHHHHHhcCCCceeHHHHHHHHH
Confidence 66566666643 5566655555566555444444333
No 300
>3ghg_B Fibrinogen beta chain; triple-stranded coiled coil, beta sheets, alpha helices, AMY amyloidosis, blood coagulation, disease mutation, glycoprot phosphoprotein; HET: NAG NDG BMA MAN GAL SIA; 2.90A {Homo sapiens} PDB: 3h32_B* 1deq_B 2a45_H*
Probab=24.05 E-value=3.5e+02 Score=29.35 Aligned_cols=106 Identities=16% Similarity=0.211 Sum_probs=0.0
Q ss_pred HhhHHHHHH----HHHHHHhhhhhhhhhhhhhhHHhHHHHHHHhhhhhccccchhHH-HHHHHHHHHHHHHHH-----hH
Q 006114 231 LADTTQLYE----KKIAELNKKLEDEHACFEGAVEQLDMVKKLLSDYQNSNQGQKEV-HELCVKLKETRQLHE-----SA 300 (660)
Q Consensus 231 l~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~-~~Lk~~Le~e~~~~e-----~~ 300 (660)
|+||---|+ +.|.+|...|+.-.-...++.+-...|+..+-..|+.....+-+ .+.+++||+...-.+ ..
T Consensus 82 lad~L~kye~~V~~dl~~Le~~l~~isn~Ts~a~~~v~~ik~s~~~~q~~~~~n~~~~~~s~~mle~~~~~~~~~~~~~~ 161 (461)
T 3ghg_B 82 LQEALLQQERPIRNSVDELNNNVEAVSQTSSSSFQYMYLLKDLWQKRQKQVKDNENVVNEYSSELEKHQLYIDETVNSNI 161 (461)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTHHHHHHHHHHHHHHHHHHHHHTTSCHHHHHHHHHTHHHHHHHTHH
T ss_pred HHHHHHhcccchhhHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhccccCCCCcchhHHHHHHHHHHHHHHHHHhhhhccc
Q ss_pred HHHHHHHHHHHHHHHHhhhhccHHHHHHHHHHHHHHHHhhhhHHHHHHHHhhCCCCC
Q 006114 301 VYEVQTLKSEYKNLLEEKETMSDELQAARQRLLVEEKQRKAIEYELVKLKKTAPEHD 357 (660)
Q Consensus 301 e~E~~~lks~l~~l~~~~~~~~eel~~~~k~l~~e~~~rkkLe~E~~~l~~~l~~~~ 357 (660)
+..|+-|++.+..+.. .+ .+|+..+..+...|..+|
T Consensus 162 ~~~i~~l~~~~~~~~~------------------~i---~~l~~~~~~~~~~c~~pc 197 (461)
T 3ghg_B 162 PTNLRVLRSILENLRS------------------KI---QKLESDVSAQMEYCRTPC 197 (461)
T ss_dssp HHHHHHHHHHHHHHHH------------------HH---HHHHHHHHHHHHHTSSBC
T ss_pred hhHHHHHHHHHHHHHH------------------HH---HHHHHHHHhhhhhccCCC
No 301
>1ic2_A Tropomyosin alpha chain, skeletal muscle; alpha-helical coiled coil, alanine, symmetry, axial stagger, BEND, contractIle protein; 2.00A {Gallus gallus} SCOP: h.1.5.1
Probab=23.95 E-value=2.9e+02 Score=22.33 Aligned_cols=42 Identities=14% Similarity=0.253 Sum_probs=16.3
Q ss_pred HHHHHHHHHhhhhhhhhhhhhhhHHHHHHhhHHHHHHHHHHH
Q 006114 145 EKIVQLEISLKNSKQQQLDNSSYQKVLADTTQMYEKKITELI 186 (660)
Q Consensus 145 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ 186 (660)
.|+++|..+..+...+--.-....+...+.....+.+|..|.
T Consensus 6 kKm~~lk~e~d~a~~~~~~~e~~l~~~e~~~~~~E~ev~~L~ 47 (81)
T 1ic2_A 6 KKMQMLKLDKENALDRAEQAEADKKAAEERSKQLEDELVALQ 47 (81)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHH
Confidence 344444444444433333333333333333333344444433
No 302
>1gk7_A Vimentin; intermediate filament, heptad repeat; 1.4A {Homo sapiens} SCOP: h.1.20.1 PDB: 3g1e_A
Probab=23.88 E-value=39 Score=24.07 Aligned_cols=15 Identities=47% Similarity=0.632 Sum_probs=10.6
Q ss_pred hHHHHhhhhHHHHHH
Q 006114 113 EFLEKENAHLELEVE 127 (660)
Q Consensus 113 ~~~~~~~~~~~~~~~ 127 (660)
-+|+.+|+.|+.++.
T Consensus 23 R~LE~~N~~Le~~i~ 37 (39)
T 1gk7_A 23 RFLEQQNKILLAELE 37 (39)
T ss_dssp HHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHH
Confidence 366667888887764
No 303
>1vsy_5 Proteasome activator BLM10; 20S proteasome BLM10, hydrolase, nucleus, phosphoprotein, PR proteasome, threonine protease; 3.00A {Saccharomyces cerevisiae} PDB: 3l5q_6
Probab=23.53 E-value=15 Score=44.05 Aligned_cols=32 Identities=9% Similarity=0.129 Sum_probs=27.3
Q ss_pred cHHHHHHHHhcCCC-HHHHHHHHHHHHHhhccc
Q 006114 532 GAIKALLAMVRSGN-IDVIAQVARGLANFAKCE 563 (660)
Q Consensus 532 G~V~~Lv~lL~s~~-~~v~~~Al~aLanLA~~~ 563 (660)
.+...++.+|.++. .+|+..|+.+|+-|..|.
T Consensus 843 ~i~~~v~~~L~D~q~~EVRe~Aa~tLsgll~c~ 875 (997)
T 1vsy_5 843 KILEFVVSNLYNEQFVEVRVRAASILSDIVHNW 875 (997)
T ss_dssp HTHHHHTTTTTCSSCHHHHHHHHHHHHHHHHSC
T ss_pred HHHHHHHHHhcCCccHHHHHHHHHHHHHHHHcC
Confidence 45667788888999 999999999999997775
No 304
>2xpp_A IWS1, ECU08_0440; transcription, elongation, histone chaperone, RNA polymerase mRNA export; 1.74A {Encephalitozoon cuniculi} PDB: 2xpo_A 2xpn_A 2xpl_A
Probab=23.37 E-value=3.4e+02 Score=24.74 Aligned_cols=74 Identities=15% Similarity=0.193 Sum_probs=52.7
Q ss_pred hhhHHHhhcChHHHHHHhhcC------CCHHHHHHHHHHHHHhhcCCccHHHHHhcCcHHHHHHHHhcC-ChHHHHHHHH
Q 006114 573 KGRSHLMEDSALEWLIANSKT------NSASTRRHVELALCHLAQNEDNARDFISRGGAKELVQISIES-SREDIRNLAK 645 (660)
Q Consensus 573 e~r~~Li~~G~v~~Lv~lL~s------~d~~vr~~Aa~AL~nLa~~~e~~~~Ive~G~l~~Lv~lL~s~-s~~~ir~~A~ 645 (660)
..+..+++.|++..+-.-|.. ++..+|.....+|.+|- -....+.+.|+-..++.+..++ ..+.++..|.
T Consensus 52 ~l~~~~ld~giL~~l~~WL~PLpDgsLP~~~Ir~~lL~~L~~lP---I~~e~Lk~SglGkvv~~l~k~~~et~~nk~la~ 128 (145)
T 2xpp_A 52 ALQESLLDEGILDEIKGWLEPLPDKSMPNIKIRKRLLDVLKTMK---IHKEHLVTSGVGKIVYFYSINPKESKEVRASAK 128 (145)
T ss_dssp TTHHHHHHTTHHHHHHHHHSCCTTSCCCCHHHHHHHHHHHHTSC---CCHHHHHHHCHHHHHHHHHHCTTSCHHHHHHHH
T ss_pred HHHHHHHHcCHHHHHHHHhCcCCCCCCCCHHHHHHHHHHHHHCC---CCHHHhhcCCCCcchhhhhcCCccCHHHHHHHH
Confidence 345678889988887776654 35779998888888873 4456777777766666666666 3456888888
Q ss_pred HHHh
Q 006114 646 KTMK 649 (660)
Q Consensus 646 ~~L~ 649 (660)
+++.
T Consensus 129 ~Li~ 132 (145)
T 2xpp_A 129 ALVQ 132 (145)
T ss_dssp HHHH
T ss_pred HHHH
Confidence 7763
No 305
>3k29_A Putative uncharacterized protein; YSCO, type III secretion apparatus, S genomics, csgid; HET: MSE; 2.00A {Chlamydia trachomatis}
Probab=23.26 E-value=4.6e+02 Score=24.48 Aligned_cols=42 Identities=21% Similarity=0.191 Sum_probs=30.8
Q ss_pred hhhHHHHHHhhHHHHHHHHHHHHHHHHHHhhhhchHHHHHHH
Q 006114 165 SSYQKVLADTTQMYEKKITELIKQLEIEHARSEGAEEQVDTM 206 (660)
Q Consensus 165 ~~~~~~~~~~~~~~~~~~~~l~~~l~~e~~~~~~~~~~~~~l 206 (660)
..|.+.+.---..+++++.+..+.++.+.-.-..+..++..-
T Consensus 77 ~~yI~llrErea~lEqkVaeq~e~Ve~e~q~Le~ar~el~qA 118 (169)
T 3k29_A 77 KAYIKVVAIQLSEEEEKVNKQKENVLAASKELERAEVELTKR 118 (169)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 778888888888999999888888887775544444444433
No 306
>4gkw_A Spindle assembly abnormal protein 6; double helix, SAS-5, centriole, structural protein; 3.30A {Caenorhabditis elegans}
Probab=23.26 E-value=4.1e+02 Score=23.84 Aligned_cols=32 Identities=31% Similarity=0.336 Sum_probs=17.8
Q ss_pred HHHHHHHHHHhhhhhhHHHHhhhhhHHHHHHh
Q 006114 201 EQVDTMKKLISDNQKSIEQYEMENSTYQKALA 232 (660)
Q Consensus 201 ~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~l~ 232 (660)
.+|++|++.-.-.||.+...-.||++.|.-+.
T Consensus 46 gKVDQlqKRn~~HQKEi~~Lrae~~~~QRn~~ 77 (167)
T 4gkw_A 46 GKVDQLQKRNVAHQKEIGKLRAELGTAQRNLE 77 (167)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhHHHHHHhccHHHHHHHHHHHHHHHHHHhHH
Confidence 34666666555555555555555555555443
No 307
>1qsd_A Protein (beta-tubulin binding post-chaperonin cofactor); four-helix-bundle, chaperone; 2.20A {Saccharomyces cerevisiae} SCOP: a.7.5.1
Probab=22.81 E-value=3.7e+02 Score=23.14 Aligned_cols=67 Identities=9% Similarity=0.161 Sum_probs=41.3
Q ss_pred HHHHhhHHHHHHHHHHHHHHHHHHhhhhchHHHHHHHHHHHhhhhhhHHHHhhhhhHHHHHHhhHHHHHHHHHHHHhhhh
Q 006114 170 VLADTTQMYEKKITELIKQLEIEHARSEGAEEQVDTMKKLISDNQKSIEQYEMENSTYQKALADTTQLYEKKIAELNKKL 249 (660)
Q Consensus 170 ~~~~~~~~~~~~~~~l~~~l~~e~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~ 249 (660)
-|.++...|++|+.+-...++.=++....=+-.+.+-+..|.+++ .++-|+.+-.+.-++.|..-|
T Consensus 15 RL~KE~~~Y~kE~~~q~~riek~k~~~~~dey~iKkq~evl~Et~--------------~mipd~~~Rl~~a~~~L~~~l 80 (106)
T 1qsd_A 15 RLTKEEGYYQQELKDQEAHVAKLKEDKSVDPYDLKKQEEVLDDTK--------------RLLPTLYEKIREFKEDLEQFL 80 (106)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHCTTSCHHHHHHHHHHHHHHH--------------HHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHH--------------HhhHHHHHHHHHHHHHHHHHH
Confidence 567788888888888887777755442102333344444444444 456666666667777777777
Q ss_pred h
Q 006114 250 E 250 (660)
Q Consensus 250 ~ 250 (660)
+
T Consensus 81 ~ 81 (106)
T 1qsd_A 81 K 81 (106)
T ss_dssp H
T ss_pred H
Confidence 4
No 308
>1m1j_C Fibrinogen gamma chain; coiled coils, disulfide rings, fibrinogen, blood clotting; HET: NDG NAG; 2.70A {Gallus gallus} SCOP: d.171.1.1 h.1.8.1 PDB: 1ei3_C
Probab=22.81 E-value=4.5e+02 Score=28.04 Aligned_cols=18 Identities=6% Similarity=0.148 Sum_probs=8.1
Q ss_pred HHhhhhHHHHHHHHHhhh
Q 006114 116 EKENAHLELEVEKILGEL 133 (660)
Q Consensus 116 ~~~~~~~~~~~~~~~~~~ 133 (660)
.++-.++-.++..+.+.+
T Consensus 47 l~elsn~ts~v~~Lvk~i 64 (409)
T 1m1j_C 47 LQQATNSTGSIEYLIQHI 64 (409)
T ss_dssp HHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 334444444444554444
No 309
>3d5a_X RF1, peptide chain release factor 1; ribosome, ribonucleoprotein, ribosomal protein, RNA-binding, binding, metal-binding, zinc-finger; 3.21A {Thermus thermophilus} PDB: 2b64_Y 3d5c_X 3mr8_V 3ms0_V
Probab=22.68 E-value=1e+02 Score=32.37 Aligned_cols=7 Identities=43% Similarity=0.449 Sum_probs=2.5
Q ss_pred HHHhhhh
Q 006114 243 AELNKKL 249 (660)
Q Consensus 243 ~~~~~~~ 249 (660)
++|.+++
T Consensus 13 ~el~~~~ 19 (354)
T 3d5a_X 13 RELEALL 19 (354)
T ss_dssp HHHHHHT
T ss_pred HHHHHHh
Confidence 3333333
No 310
>2xpp_A IWS1, ECU08_0440; transcription, elongation, histone chaperone, RNA polymerase mRNA export; 1.74A {Encephalitozoon cuniculi} PDB: 2xpo_A 2xpn_A 2xpl_A
Probab=22.45 E-value=4e+02 Score=24.23 Aligned_cols=79 Identities=14% Similarity=0.171 Sum_probs=59.1
Q ss_pred cChhHHHHHHhccHHHHHHHHhcC------CCHHHHHHHHHHHHHhhccchhhhhhcchhhhHHHhhcChHHHHHHhhcC
Q 006114 520 GNEKLHTMLEEDGAIKALLAMVRS------GNIDVIAQVARGLANFAKCESRAIVQGQRKGRSHLMEDSALEWLIANSKT 593 (660)
Q Consensus 520 ~~~~~r~~iv~~G~V~~Lv~lL~s------~~~~v~~~Al~aLanLA~~~~~~~aq~~~e~r~~Li~~G~v~~Lv~lL~s 593 (660)
.....+..+++.|++..+-..|.+ ++..++...+.+|.++--. +..+...|.-..++.+-++
T Consensus 49 ~k~~l~~~~ld~giL~~l~~WL~PLpDgsLP~~~Ir~~lL~~L~~lPI~------------~e~Lk~SglGkvv~~l~k~ 116 (145)
T 2xpp_A 49 MSKALQESLLDEGILDEIKGWLEPLPDKSMPNIKIRKRLLDVLKTMKIH------------KEHLVTSGVGKIVYFYSIN 116 (145)
T ss_dssp TCTTTHHHHHHTTHHHHHHHHHSCCTTSCCCCHHHHHHHHHHHHTSCCC------------HHHHHHHCHHHHHHHHHHC
T ss_pred hhHHHHHHHHHcCHHHHHHHHhCcCCCCCCCCHHHHHHHHHHHHHCCCC------------HHHhhcCCCCcchhhhhcC
Confidence 455667889999999999999873 5678999999999888522 3456677777777777666
Q ss_pred C--CHHHHHHHHHHHHHhh
Q 006114 594 N--SASTRRHVELALCHLA 610 (660)
Q Consensus 594 ~--d~~vr~~Aa~AL~nLa 610 (660)
+ .+..++.|-..+...+
T Consensus 117 ~~et~~nk~la~~Li~~Ws 135 (145)
T 2xpp_A 117 PKESKEVRASAKALVQKWT 135 (145)
T ss_dssp TTSCHHHHHHHHHHHHHHH
T ss_pred CccCHHHHHHHHHHHHHHH
Confidence 4 5778888877776544
No 311
>1ik9_A DNA repair protein XRCC4; DNA END joining, double-strand break repair, V(D)J recombination, protein-protein complex, coiled coil; HET: DNA; 2.30A {Homo sapiens} SCOP: b.59.1.1 h.1.11.1 PDB: 3ii6_A* 1fu1_A* 3rwr_A*
Probab=22.34 E-value=4e+02 Score=25.74 Aligned_cols=76 Identities=18% Similarity=0.269 Sum_probs=0.0
Q ss_pred HHHHHhhhhhhhHHHHhhhhHHHHHHHHHhhhhhhhhhhhhHHHHHHHHHHHhhhhhhhhhhhhhhHHHHHHhhHHHHHH
Q 006114 102 DESMRNLVTRSEFLEKENAHLELEVEKILGELNHQKDQNNLKREKIVQLEISLKNSKQQQLDNSSYQKVLADTTQMYEKK 181 (660)
Q Consensus 102 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 181 (660)
.+++..+..+..-|..+|.+|+.++.++..++.+--..+.. .|.-++.+|+.-=|.-. .+
T Consensus 131 ~~~~~~~~~~~~~L~~e~~~l~~~~~~l~~qlE~~v~~K~~-------------------~E~~L~~KF~~lLNeKK-~K 190 (213)
T 1ik9_A 131 LDTIAENQAKNEHLQKENERLLRDWNDVQGRFEKAVSAKEA-------------------LETDLYKRFILVLNEKK-TK 190 (213)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------------------HHHHHHHHHHHHHHHHH-HH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------------------HHHHHHHHHHHHHHhhH-HH
Q ss_pred HHHHHHHHHHHHhhhh
Q 006114 182 ITELIKQLEIEHARSE 197 (660)
Q Consensus 182 ~~~l~~~l~~e~~~~~ 197 (660)
|.++.++|..+.....
T Consensus 191 IR~lq~~Ll~~~~~~~ 206 (213)
T 1ik9_A 191 IRSLHNKLLNAAQERE 206 (213)
T ss_dssp HHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhh
No 312
>1vsy_4 Proteasome activator BLM10; 20S proteasome BLM10, hydrolase, nucleus, phosphoprotein, PR proteasome, threonine protease; 3.00A {Saccharomyces cerevisiae} PDB: 3l5q_5
Probab=22.23 E-value=3.9e+02 Score=31.06 Aligned_cols=117 Identities=15% Similarity=0.125 Sum_probs=66.3
Q ss_pred hHHHHHHcCCHHHHHHHHccCCCHHHHHHHHHHHHHhhcC-chhHHHHHhcCccHHHHHhhcC--CCCHHHHHHHHHHHH
Q 006114 440 NQEKIVEEGGLDALLLLLRTSQNTTILRVASGAIANLAMN-EMNQGLIMSRGGGQLLAKTASK--TDDPQTLRMVAGALA 516 (660)
Q Consensus 440 n~~~Ive~GgI~~Lv~LL~~s~d~~v~~~Aa~AL~nLA~~-~~n~~~Ive~g~I~~Ll~LL~~--s~d~~v~~~Aa~aLa 516 (660)
.+..+++. ..|.+...+- +.+..+...+..+|.+||.- |.+...|+ .+++..+..-|.. -..|.-...|+.+|.
T Consensus 332 ~~~~fV~~-l~p~~~~g~f-SK~~~~~~~~~~~l~~La~l~P~~~~lVl-P~vL~r~y~sLe~~~l~e~Hrl~~aL~~l~ 408 (799)
T 1vsy_4 332 CHEEIVEI-FLNIISLGSQ-NKNPDIANYYISCFAYLLELDPSNAYLIY-DKILIDLYDTLADQFINSRHRIISSLKQFT 408 (799)
T ss_dssp HHHHHHHH-HHHHHHHHHT-CSSHHHHHHHHHHHHHHHHTCCTTHHHHH-HHHHHHHHHHHTTTTTTCHHHHHHHHHHHH
T ss_pred HHHHHHHH-HHHHHHHHhC-cCCcchHHHHHHHHHHHHhcCCCccceeh-HHHHHHHHHHhccccccchhHHHHHHHHHH
Confidence 45556654 3444444454 77888889999999999975 54444443 3344444444432 133433444455555
Q ss_pred HHh----cChhHHHHHHhccHHHHHHHHhcCCCHHHHHHHHHHHHHhhc
Q 006114 517 NLC----GNEKLHTMLEEDGAIKALLAMVRSGNIDVIAQVARGLANFAK 561 (660)
Q Consensus 517 nLa----~~~~~r~~iv~~G~V~~Lv~lL~s~~~~v~~~Al~aLanLA~ 561 (660)
.++ ..+..+..+. ..+..++.-++..|+.-...++..+..++.
T Consensus 409 ~~~r~lv~~~~yr~hl~--~lL~l~LpgID~ND~~KT~~tl~fi~~i~s 455 (799)
T 1vsy_4 409 RVIRFIVMDKLYRVHIT--NVLSMLVSKLDMNDTNLTSNLINGIVSIAA 455 (799)
T ss_dssp TTHHHHTTSTTGGGHHH--HHHHHHHHTCCSSCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHhcCcccHHHHH--HHHHHHhccCCcccHHHHHHHHHHHHHHHH
Confidence 444 3333433222 233334444567888877777777777764
No 313
>2v4h_A NF-kappa-B essential modulator; transcription, metal-binding, NEMO - IKK gamma - NFKB pathwa darpin, transcription regulation; 2.9A {Mus musculus}
Probab=22.11 E-value=3.8e+02 Score=23.34 Aligned_cols=33 Identities=15% Similarity=0.192 Sum_probs=20.5
Q ss_pred HHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHH
Q 006114 284 HELCVKLKETRQLHESAVYEVQTLKSEYKNLLE 316 (660)
Q Consensus 284 ~~Lk~~Le~e~~~~e~~e~E~~~lks~l~~l~~ 316 (660)
..++.+.+.++.-|+++-+|...|+-++..|+.
T Consensus 72 ~IY~~DF~aERadREkl~~eKe~L~~ql~~Lq~ 104 (110)
T 2v4h_A 72 DIYKADFQAERHAREKLVEKKEYLQEQLEQLQR 104 (110)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHccchhhHHHHHhHHHHHHHHHHHHHH
Confidence 455666666666666666666666666655544
No 314
>2yy0_A C-MYC-binding protein; conserved hypothetical protein, structural genomics, NPPSFA, national project on protein structural and functional analyses; 2.40A {Homo sapiens}
Probab=21.97 E-value=1.4e+02 Score=22.55 Aligned_cols=47 Identities=28% Similarity=0.365 Sum_probs=28.0
Q ss_pred HHHHHHHhhhhhccccchhHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHH
Q 006114 263 LDMVKKLLSDYQNSNQGQKEVHELCVKLKETRQLHESAVYEVQTLKSEYK 312 (660)
Q Consensus 263 ~~~~~~~~~~~~~~~~~~~e~~~Lk~~Le~e~~~~e~~e~E~~~lks~l~ 312 (660)
|+-+|+-|+. ......++..|+..+++.....+.+.+++..|++++.
T Consensus 4 lefIk~~LG~---~~p~~~d~eaLk~E~~eLk~k~~~L~~~~~el~~~l~ 50 (53)
T 2yy0_A 4 LDFLKHHLGA---ATPENPEIELLRLELAEMKEKYEAIVEENKKLKAKLA 50 (53)
T ss_dssp ---------------CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHcCC---CCCChhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 4455666653 1234677788888888888888888888888888765
No 315
>1elk_A Target of MYB1; superhelix of helices, endocytosis/exocytosis complex; 1.50A {Homo sapiens} SCOP: a.118.9.2
Probab=20.80 E-value=2.7e+02 Score=25.33 Aligned_cols=70 Identities=10% Similarity=0.143 Sum_probs=51.5
Q ss_pred ccHHHHHhhcCCCCHHHHHHHHHHHHHHh--cChhHHHHHHhccHHHH-HHHHhcC---CCHHHHHHHHHHHHHhh
Q 006114 491 GGQLLAKTASKTDDPQTLRMVAGALANLC--GNEKLHTMLEEDGAIKA-LLAMVRS---GNIDVIAQVARGLANFA 560 (660)
Q Consensus 491 ~I~~Ll~LL~~s~d~~v~~~Aa~aLanLa--~~~~~r~~iv~~G~V~~-Lv~lL~s---~~~~v~~~Al~aLanLA 560 (660)
++..|..-|.++.++.++..|+..|-.+. ..+..+..+.....+.. |+.++.. ++..|+..++..|..-+
T Consensus 54 a~ral~krl~~~~n~~v~l~AL~LLd~~vkNcG~~fh~eva~~~fl~e~Lvk~~~~k~~~~~~Vk~kil~li~~W~ 129 (157)
T 1elk_A 54 ALRAVKKRIVGNKNFHEVMLALTVLETCVKNCGHRFHVLVASQDFVESVLVRTILPKNNPPTIVHDKVLNLIQSWA 129 (157)
T ss_dssp HHHHHHHHHTTCCCHHHHHHHHHHHHHHHHHSCHHHHHHHTSHHHHHHHTHHHHSTTTCCCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhccCCCHHHHHHHHHHHHHHHHHhCHHHHHHHhhHHHHHHHHHHHhccCCCCcHHHHHHHHHHHHHHH
Confidence 45566666654578888888888777776 44777788888888887 7888852 35688888888887655
Done!