Query 006115
Match_columns 660
No_of_seqs 202 out of 2237
Neff 9.8
Searched_HMMs 29240
Date Mon Mar 25 16:20:52 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/006115.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/006115hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1mdb_A 2,3-dihydroxybenzoate-A 100.0 2.2E-75 7.4E-80 643.5 43.7 504 41-654 24-539 (539)
2 3ni2_A 4-coumarate:COA ligase; 100.0 5.5E-75 1.9E-79 640.2 45.1 522 19-646 3-535 (536)
3 3g7s_A Long-chain-fatty-acid-- 100.0 5E-75 1.7E-79 642.4 43.5 516 32-646 9-542 (549)
4 3etc_A AMP-binding protein; ad 100.0 1E-73 3.6E-78 634.0 47.7 510 38-646 52-579 (580)
5 1v25_A Long-chain-fatty-acid-C 100.0 3.4E-74 1.2E-78 634.2 40.5 503 41-647 17-537 (541)
6 3r44_A Fatty acyl COA syntheta 100.0 6.1E-74 2.1E-78 628.7 41.9 498 39-648 13-515 (517)
7 3rix_A Luciferase, luciferin 4 100.0 5E-74 1.7E-78 634.6 38.3 523 34-652 12-547 (550)
8 1t5h_X 4-chlorobenzoyl COA lig 100.0 6.2E-73 2.1E-77 619.4 45.8 489 41-645 1-503 (504)
9 2d1s_A Luciferase, luciferin 4 100.0 4.4E-73 1.5E-77 626.0 44.6 510 41-651 24-548 (548)
10 3o83_A Peptide arylation enzym 100.0 8.6E-74 2.9E-78 631.5 38.3 500 41-646 29-540 (544)
11 4fuq_A Malonyl COA synthetase; 100.0 2.2E-73 7.5E-78 622.1 39.6 491 46-646 4-500 (503)
12 1pg4_A Acetyl-COA synthetase; 100.0 1E-72 3.5E-77 634.7 44.2 522 40-650 74-625 (652)
13 3c5e_A Acyl-coenzyme A synthet 100.0 4E-72 1.4E-76 620.5 46.7 522 25-646 21-562 (570)
14 1ry2_A Acetyl-coenzyme A synth 100.0 1.2E-72 4.2E-77 634.2 40.7 533 39-651 79-642 (663)
15 3ivr_A Putative long-chain-fat 100.0 8.2E-73 2.8E-77 619.5 36.2 492 40-647 4-502 (509)
16 3e7w_A D-alanine--poly(phospho 100.0 1.4E-71 4.7E-76 609.8 42.4 487 42-647 1-504 (511)
17 3fce_A D-alanine--poly(phospho 100.0 6.9E-72 2.4E-76 612.6 39.0 488 42-647 1-505 (512)
18 2v7b_A Benzoate-coenzyme A lig 100.0 4.7E-71 1.6E-75 608.4 45.2 503 37-642 19-528 (529)
19 4gr5_A Non-ribosomal peptide s 100.0 5.7E-72 1.9E-76 620.5 37.6 478 39-643 72-568 (570)
20 4dg8_A PA1221; ANL superfamily 100.0 2.4E-71 8.1E-76 618.4 42.3 473 41-648 26-515 (620)
21 3rg2_A Enterobactin synthase c 100.0 7.8E-71 2.7E-75 616.8 45.7 501 41-650 26-538 (617)
22 3l8c_A D-alanine--poly(phospho 100.0 5.6E-71 1.9E-75 606.9 38.7 492 41-647 3-513 (521)
23 1amu_A GRSA, gramicidin synthe 100.0 2E-70 7E-75 605.9 40.6 474 41-644 38-527 (563)
24 3tsy_A Fusion protein 4-coumar 100.0 5.8E-71 2E-75 649.5 37.1 541 15-655 38-591 (979)
25 3ipl_A 2-succinylbenzoate--COA 100.0 6E-71 2E-75 603.7 34.5 492 42-647 1-498 (501)
26 3nyq_A Malonyl-COA ligase; A/B 100.0 1.4E-70 4.8E-75 599.9 31.8 478 38-642 18-504 (505)
27 3gqw_A Fatty acid AMP ligase; 100.0 3.7E-68 1.3E-72 592.7 43.8 517 29-655 8-572 (576)
28 3ite_A SIDN siderophore synthe 100.0 4.8E-69 1.7E-73 596.9 32.1 518 39-654 17-552 (562)
29 3kxw_A Saframycin MX1 syntheta 100.0 5.4E-68 1.8E-72 592.7 40.0 503 40-646 9-567 (590)
30 2vsq_A Surfactin synthetase su 100.0 5.5E-66 1.9E-70 622.0 46.1 477 41-643 463-957 (1304)
31 3t5a_A Long-chain-fatty-acid-- 100.0 4.1E-56 1.4E-60 484.2 30.1 400 41-514 23-480 (480)
32 4gs5_A Acyl-COA synthetase (AM 100.0 1.6E-49 5.5E-54 412.9 20.5 314 219-648 36-356 (358)
33 3qov_A Phenylacetate-coenzyme 100.0 1.2E-43 4E-48 380.6 23.7 334 216-638 81-429 (436)
34 2y4o_A Phenylacetate-coenzyme 100.0 2.1E-43 7.2E-48 379.4 24.5 337 216-641 88-439 (443)
35 2y27_A Phenylacetate-coenzyme 100.0 9.4E-43 3.2E-47 373.6 26.7 334 216-639 86-432 (437)
36 3hgu_A EHPF; phenazine, antibi 99.9 2.3E-27 7.9E-32 248.0 16.3 237 217-521 88-365 (369)
37 3lax_A Phenylacetate-coenzyme 99.3 6.5E-12 2.2E-16 105.4 8.2 98 513-637 1-101 (109)
38 3gxs_A Phenylacetate-coenzyme 99.1 1.1E-10 3.9E-15 97.6 8.4 99 513-638 1-102 (109)
39 4eql_A 4-substituted benzoates 98.8 4.6E-08 1.6E-12 104.9 14.5 131 385-538 302-446 (581)
40 4b2g_A GH3-1 auxin conjugating 98.6 7.2E-08 2.5E-12 103.5 9.9 155 385-562 307-492 (609)
41 4epl_A Jasmonic acid-amido syn 98.5 2.1E-06 7.1E-11 91.9 18.4 159 383-563 302-488 (581)
42 3qov_A Phenylacetate-coenzyme 90.1 1.9 6.5E-05 44.7 11.8 121 57-181 86-216 (436)
43 2y27_A Phenylacetate-coenzyme 89.5 2 6.9E-05 44.5 11.5 105 56-164 89-198 (437)
44 2y4o_A Phenylacetate-coenzyme 89.3 2 6.9E-05 44.6 11.4 105 56-164 91-200 (443)
45 3ipl_A 2-succinylbenzoate--COA 79.6 14 0.00048 38.8 12.5 121 55-181 161-284 (501)
46 3hgu_A EHPF; phenazine, antibi 76.5 8.8 0.0003 38.5 9.4 122 55-180 89-240 (369)
47 1mdb_A 2,3-dihydroxybenzoate-A 72.1 33 0.0011 36.4 12.9 121 55-181 180-308 (539)
48 2d1s_A Luciferase, luciferin 4 70.9 17 0.00057 38.8 10.3 121 57-181 192-319 (548)
49 4dg8_A PA1221; ANL superfamily 66.9 26 0.00088 38.1 10.8 121 55-182 162-287 (620)
50 3o83_A Peptide arylation enzym 66.7 33 0.0011 36.4 11.5 120 56-181 190-317 (544)
51 3r44_A Fatty acyl COA syntheta 66.5 37 0.0013 35.7 11.8 118 56-181 169-294 (517)
52 3g7s_A Long-chain-fatty-acid-- 65.3 41 0.0014 35.6 12.0 107 218-328 32-140 (549)
53 4gs5_A Acyl-COA synthetase (AM 64.8 35 0.0012 34.0 10.6 108 44-163 27-138 (358)
54 3ni2_A 4-coumarate:COA ligase; 64.6 30 0.001 36.6 10.7 101 218-328 35-137 (536)
55 3e7w_A D-alanine--poly(phospho 62.9 45 0.0015 35.0 11.6 120 56-181 142-270 (511)
56 1v25_A Long-chain-fatty-acid-C 62.9 43 0.0015 35.4 11.5 101 218-326 31-133 (541)
57 3ivr_A Putative long-chain-fat 62.6 30 0.001 36.2 10.2 98 218-327 19-118 (509)
58 3rix_A Luciferase, luciferin 4 62.4 14 0.00047 39.4 7.5 88 238-328 49-138 (550)
59 3fce_A D-alanine--poly(phospho 61.9 37 0.0013 35.6 10.7 121 56-181 143-271 (512)
60 4gr5_A Non-ribosomal peptide s 59.8 26 0.00089 37.5 9.1 122 55-182 212-337 (570)
61 3kxw_A Saframycin MX1 syntheta 59.0 37 0.0013 36.3 10.3 122 55-181 165-299 (590)
62 3rg2_A Enterobactin synthase c 58.6 72 0.0025 34.3 12.5 120 56-181 183-312 (617)
63 3c5e_A Acyl-coenzyme A synthet 55.3 66 0.0023 34.3 11.4 121 56-181 205-332 (570)
64 1t5h_X 4-chlorobenzoyl COA lig 54.7 57 0.0019 34.1 10.6 98 218-325 15-116 (504)
65 1pg4_A Acetyl-COA synthetase; 54.7 50 0.0017 36.0 10.5 122 56-182 255-389 (652)
66 1amu_A GRSA, gramicidin synthe 53.7 60 0.0021 34.5 10.7 95 218-324 52-148 (563)
67 3tbh_A O-acetyl serine sulfhyd 53.1 45 0.0016 32.8 8.9 66 92-157 61-127 (334)
68 3t5a_A Long-chain-fatty-acid-- 52.7 83 0.0028 32.4 11.5 106 218-327 37-147 (480)
69 2v7b_A Benzoate-coenzyme A lig 52.3 45 0.0015 35.1 9.4 98 218-327 36-135 (529)
70 4fuq_A Malonyl COA synthetase; 51.5 41 0.0014 35.2 8.9 85 239-326 28-114 (503)
71 1ry2_A Acetyl-coenzyme A synth 50.4 67 0.0023 35.0 10.6 121 56-181 261-394 (663)
72 3etc_A AMP-binding protein; ad 49.8 59 0.002 34.8 9.9 98 218-322 69-168 (580)
73 3ezx_A MMCP 1, monomethylamine 44.5 1.2E+02 0.004 27.6 9.6 90 264-403 91-195 (215)
74 3nyq_A Malonyl-COA ligase; A/B 43.4 1.1E+02 0.0038 31.8 10.7 102 55-164 153-259 (505)
75 3tsy_A Fusion protein 4-coumar 42.3 72 0.0025 36.7 9.7 99 218-326 74-174 (979)
76 3vc3_A Beta-cyanoalnine syntha 42.3 79 0.0027 31.2 8.7 69 89-157 74-142 (344)
77 3ite_A SIDN siderophore synthe 40.0 1.2E+02 0.0042 31.9 10.5 113 68-181 184-304 (562)
78 2vsq_A Surfactin synthetase su 36.4 68 0.0023 38.3 8.4 121 55-182 605-731 (1304)
79 3l8c_A D-alanine--poly(phospho 34.6 1.1E+02 0.0037 31.9 8.9 81 238-321 28-110 (521)
80 4eez_A Alcohol dehydrogenase 1 31.6 1.8E+02 0.0063 28.2 9.5 76 77-155 137-215 (348)
81 4aec_A Cysteine synthase, mito 30.3 1.7E+02 0.0057 29.9 8.9 63 94-156 166-229 (430)
82 1z7w_A Cysteine synthase; tran 29.9 1.8E+02 0.0061 28.1 8.9 64 94-157 58-122 (322)
83 3ist_A Glutamate racemase; str 29.5 1.6E+02 0.0055 27.8 8.1 61 47-114 20-80 (269)
84 2q3b_A Cysteine synthase A; py 29.5 1.9E+02 0.0066 27.7 9.1 64 93-157 58-122 (313)
85 2egu_A Cysteine synthase; O-ac 29.2 2E+02 0.0068 27.5 9.1 64 93-157 56-120 (308)
86 3gqw_A Fatty acid AMP ligase; 28.4 1.8E+02 0.0062 30.6 9.4 86 238-326 48-142 (576)
87 2jtq_A Phage shock protein E; 27.3 1.3E+02 0.0044 22.1 5.9 46 75-127 22-67 (85)
88 2pqm_A Cysteine synthase; OASS 25.3 2E+02 0.0069 28.1 8.4 64 93-157 69-133 (343)
89 3goh_A Alcohol dehydrogenase, 25.3 1.6E+02 0.0056 28.1 7.7 73 76-153 115-190 (315)
90 3ju7_A Putative PLP-dependent 24.8 1.4E+02 0.0049 29.5 7.3 60 92-154 69-135 (377)
91 2cvi_A 75AA long hypothetical 23.0 2.2E+02 0.0075 20.8 6.4 33 530-563 16-48 (83)
92 2v03_A Cysteine synthase B; py 22.7 2.9E+02 0.01 26.3 8.9 63 93-156 52-115 (303)
93 1ve1_A O-acetylserine sulfhydr 22.6 3E+02 0.01 26.2 9.0 64 93-157 51-117 (304)
94 1y80_A Predicted cobalamin bin 22.4 2.3E+02 0.0079 25.2 7.6 57 101-157 88-148 (210)
95 2cf5_A Atccad5, CAD, cinnamyl 22.2 2E+02 0.0067 28.3 7.7 62 92-156 171-233 (357)
96 3ndn_A O-succinylhomoserine su 22.2 5.9E+02 0.02 25.3 12.4 57 106-162 100-159 (414)
97 3ri6_A O-acetylhomoserine sulf 21.2 2.7E+02 0.0093 28.2 8.7 61 105-165 100-163 (430)
98 1h2b_A Alcohol dehydrogenase; 21.1 2.6E+02 0.0088 27.4 8.3 62 92-156 176-239 (359)
99 3two_A Mannitol dehydrogenase; 21.0 2.3E+02 0.0077 27.6 7.8 73 77-153 150-225 (348)
100 3pc3_A CG1753, isoform A; CBS, 20.9 2.6E+02 0.009 29.2 8.7 62 94-156 105-167 (527)
101 4h1h_A LMO1638 protein; MCCF-l 20.7 1.2E+02 0.0042 29.5 5.6 61 97-157 8-87 (327)
102 3dwg_A Cysteine synthase B; su 20.7 3.1E+02 0.01 26.5 8.6 64 93-157 64-128 (325)
103 3s2e_A Zinc-containing alcohol 20.6 2.4E+02 0.0084 27.2 8.0 76 77-156 140-218 (340)
104 3oon_A Outer membrane protein 20.3 2.2E+02 0.0074 22.8 6.3 79 28-109 19-97 (123)
No 1
>1mdb_A 2,3-dihydroxybenzoate-AMP ligase; adenylation domain, peptide synthetase, antibiotic biosynthesis, siderophore formation; HET: AMP DBH; 2.15A {Bacillus subtilis} SCOP: e.23.1.1 PDB: 1md9_A* 1mdf_A
Probab=100.00 E-value=2.2e-75 Score=643.49 Aligned_cols=504 Identities=19% Similarity=0.174 Sum_probs=411.4
Q ss_pred CCcHHHHHHHHHHhCCCCCceeeeccccCCCCCceEEeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEeCChhhHHHHHHH
Q 006115 41 LNTAWDIFSMSVQKYPGNRMLGWRPFVDGKFGPYVWKTYKEVYEEVLQIVSALRASGAEPGCRVGIYGANCPQWVEAMEA 120 (660)
Q Consensus 41 ~~ti~~~l~~~a~~~pd~~a~~~~~~~~~~~~~~~~~Ty~el~~~~~~lA~~L~~~gv~~gd~V~l~~~n~~~~~~~~lA 120 (660)
..|+.++|.++++++||++|+++. + +++||+||.++++++|++|++.|+++||+|+++++|++++++++||
T Consensus 24 ~~tl~~~l~~~a~~~p~~~A~~~~----~-----~~~Ty~eL~~~~~~lA~~L~~~Gv~~gd~V~i~~~~~~~~~~~~lA 94 (539)
T 1mdb_A 24 GETFGDLLRDRAAKYGDRIAITCG----N-----THWSYRELDTRADRLAAGFQKLGIQQKDRVVVQLPNIKEFFEVIFA 94 (539)
T ss_dssp SCCHHHHHHHHHHHHTTSEEEEET----T-----EEEEHHHHHHHHHHHHHHHHHHTCCTTCEEEECCCSSHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHCCCCEEEEeC----C-----CcccHHHHHHHHHHHHHHHHHcCCCCCCEEEEEcCCcHHHHHHHHH
Confidence 368999999999999999999864 2 6899999999999999999999999999999999999999999999
Q ss_pred HHhCCCeEeecCCCCChhhHHHHhhcccceEEEEccchhh----hhhccccccccCccEEEEecCCcHHHHHHHhhCCce
Q 006115 121 CNALSLICVPLYDTLGPGAVNFILDHAEIDFVFVQDKKVK----ELLSPDCRSAQRLRVMVCFTSLTAEQKEMAVQTGIK 196 (660)
Q Consensus 121 ~~~~G~~~v~i~~~~~~~~l~~~l~~~~~~~vi~~~~~~~----~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~ 196 (660)
|+++|++++|++|.++.+++.++++.++++++|+++.... ..........+.++.++..+...
T Consensus 95 ~~~~Ga~~vpl~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------------- 161 (539)
T 1mdb_A 95 LFRLGALPVFALPSHRSSEITYFCEFAEAAAYIIPDAYSGFDYRSLARQVQSKLPTLKNIIVAGEAE------------- 161 (539)
T ss_dssp HHHHTCEEEECCTTCCHHHHHHHHHHTTCSEEEEESEETTEEHHHHHHHHHHHCTTCCCEEEESCCT-------------
T ss_pred HHHcCeEEecCCCCCCHHHHHHHHHhCCCCEEEeccccccccHHHHHHHHHhcCCCccEEEEcCCcc-------------
Confidence 9999999999999999999999999999999999876321 11111111223344444433211
Q ss_pred eeeHHHHHhcCccCCccCCCCCCCCeEEEEecCCCCCCCceeeeccHhHHHHhhhcccccccccCCCCCCcEEEEecChh
Q 006115 197 PYSWDEFLHLGKVNEMEILPPQPFNICTIMYTSGTSGDPKGVVLTHETIATFVSGVDLFLDQFEDKMTVDDVYLSFLPLA 276 (660)
Q Consensus 197 ~~~~~~~~~~~~~~~~~~~~~~~~~~a~i~~TSGTTG~pK~v~~th~~l~~~~~~~~~~~~~~~~~~~~~d~~l~~~p~~ 276 (660)
.+.++.... ..........++++++++|||||||.||+|+++|+++++.+......+ ++.++|++++.+|++
T Consensus 162 --~~~~~~~~~-~~~~~~~~~~~~d~a~i~~TSGTTG~PKgV~~th~~~~~~~~~~~~~~-----~~~~~d~~l~~~p~~ 233 (539)
T 1mdb_A 162 --EFLPLEDLH-TEPVKLPEVKSSDVAFLQLSGGSTGLSKLIPRTHDDYIYSLKRSVEVC-----WLDHSTVYLAALPMA 233 (539)
T ss_dssp --TSEEGGGCC-CCCCCCCCCCTTSEEEEEECCCSSSSCCEEEEEHHHHHHHHHHHHHHH-----TCCTTCEEEECSCTT
T ss_pred --chhhhhhcc-ccccccCCCCcCceEEEEeCCCcCCCCcEEEEehHHHHHHHHHHHHhh-----CCCCCCEEEEeeccc
Confidence 011111111 111122345789999999999999999999999999999988877666 788999999999999
Q ss_pred hHHHHHH--HHHHhhcCcEEEEecC-ChHHHHHHhhhhcCeEEEechHHHHHHHHHHHHHHHhhchHHHHHHHHHHHHHH
Q 006115 277 HILDRVI--EEYFFRRGASVGYYHG-DLNALRDDLMELKPTLLAGVPRVFEKIHEGIKKALEELRPLRRRIFDALYKYKL 353 (660)
Q Consensus 277 ~~~g~~~--~~~~l~~G~~~v~~~~-~~~~~~~~i~~~~~t~l~~~p~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~ 353 (660)
|.+++.. ++.+++.|+++++.+. ++..+++.++++++|+++++|+++..+++......
T Consensus 234 h~~~~~~~~~~~~l~~G~~~v~~~~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~------------------- 294 (539)
T 1mdb_A 234 HNYPLSSPGVLGVLYAGGRVVLSPSPSPDDAFPLIEREKVTITALVPPLAMVWMDAASSRR------------------- 294 (539)
T ss_dssp SHHHHHSSHHHHHHHTTCEEEECSSSSHHHHHHHHHHHTCSEEEECHHHHHHHHHHHHHCC-------------------
T ss_pred ccchhhHHHHHHHHHhCCEEEECCCCCHHHHHHHHHHcCCeEEEccHHHHHHHHhCccccC-------------------
Confidence 9999874 6788999999999876 89999999999999999999999999876432110
Q ss_pred HHHhcCCCCCCcchhHHHHHHHHHHHHhCCcEeEEEEccCCCCHHHHHHHHHhcCCceeeecCCCCCCCceecccCCCcc
Q 006115 354 AWMNMGYKQREASPLADLLAFRKVKARLGGRLRLVISGGAPLSTEVEEFLRVTCCAFLVQGYGLTETCGPTTVCFPDEMC 433 (660)
Q Consensus 354 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~slr~v~~~G~~l~~~~~~~~~~~~~~~v~~~YG~tE~~~~~~~~~~~~~~ 433 (660)
...++||.+++||+++++++.+.+++.+|+++++.||+||++..+.........
T Consensus 295 --------------------------~~l~~lr~~~~gG~~l~~~~~~~~~~~~~~~~~~~YG~TE~~~~~~~~~~~~~~ 348 (539)
T 1mdb_A 295 --------------------------DDLSSLQVLQVGGAKFSAEAARRVKAVFGCTLQQVFGMAEGLVNYTRLDDPEEI 348 (539)
T ss_dssp --------------------------CCCTTCCEEEEESSCCCHHHHTTHHHHTCSEEEEEEECTTSCEEECCTTSCHHH
T ss_pred --------------------------CCccceeEEEEcCCCCCHHHHHHHHHHhCCcEEEEEcCCCCcccccCCCCcHHh
Confidence 011489999999999999999999998999999999999965433322221123
Q ss_pred ccCccCCCccC-eeEEeeecCCCCCCCCCCCCCceEEEccCCcccccCCCchhhhhcc-cCCccccCceEEECCCCcEEE
Q 006115 434 MVGTAGPVSVY-SELRLEEVPEMGYSPLDDPPCGEVCVRGKTLFSGYYKNPDLTRESI-IDGWFHTGDIGQILPNGVVKI 511 (660)
Q Consensus 434 ~~~~~G~~~~~-~~v~iv~~~~~~~~~~~~g~~GEi~v~g~~~~~gy~~~~~~~~~~f-~~g~~~TGDl~~~~~~G~l~~ 511 (660)
..+++|+|+++ .+++|+| +++. +++.|+.|||+|+|++++.||+++++.|.+.| .+|||+|||+|++|+||+|++
T Consensus 349 ~~~~~G~p~~~~~~~~i~d-~~~~--~~~~g~~GEl~v~g~~v~~GY~~~~~~t~~~f~~~g~~~TGDlg~~~~dG~l~~ 425 (539)
T 1mdb_A 349 IVNTQGKPMSPYDESRVWD-DHDR--DVKPGETGHLLTRGPYTIRGYYKAEEHNAASFTEDGFYRTGDIVRLTRDGYIVV 425 (539)
T ss_dssp HHHCCCEESSTTCEEEEEC-TTSC--BCCTTCCEEEEEECTTSCSSCTTCHHHHHHHBCTTSCEEEEEEEEECTTSCEEE
T ss_pred cCCCCCcccCCCceEEEEC-CCCC--CCcCCCcceEEeeCcccchhhcCChhhhhhhccCCCCeecCceEEECCCCcEEE
Confidence 34789999975 5899998 5554 55667899999999999999999999999999 699999999999999999999
Q ss_pred EeccCCeeEcCCCeeecchhHHHHHhcCcCcceEEEEecCCC---CeEEEEEEcChhhHHHHHHHCCCCCcHHHHhccHH
Q 006115 512 IDRKKNLIKISQGEYVALEYLENVYCVAPIIEDIWVYGDSLK---SMLVAVVVPCEEDTKKWAYSNGHAGSFLELCSLVQ 588 (660)
Q Consensus 512 ~GR~~d~i~~~~G~~v~~~~iE~~l~~~p~V~~~~v~~~~~~---~~~~a~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 588 (660)
+||.||+||+ +|++|+|.+||++|.+||+|.+|+|++.+++ +.++|+|++.... . +
T Consensus 426 ~GR~dd~ik~-~G~~v~p~eIE~~l~~~p~V~~a~vv~~~~~~~g~~~~a~vv~~~~~---------~--------~--- 484 (539)
T 1mdb_A 426 EGRAKDQINR-GGEKVAAEEVENHLLAHPAVHDAAMVSMPDQFLGERSCVFIIPRDEA---------P--------K--- 484 (539)
T ss_dssp EEEGGGCEEC-SSCEECHHHHHHHHTTSTTEEEEEEEEEEETTTEEEEEEEEEESSSC---------C--------C---
T ss_pred eccccceEEE-CCEEECHHHHHHHHHhCCCcceEEEEeccccccCceEEEEEEECCCC---------C--------C---
Confidence 9999999996 8999999999999999999999999997655 3788998876421 0 1
Q ss_pred HHHHHHHHHHHHHHHCCCCCceeeeEEEEecCCCCCCCCccccccccchHHHHHHHHHHHHHHHhh
Q 006115 589 LQNYILSELKNAAERNKLRGFEHIKGVILDPRPFDMERDLVTATLKKKRNKLLIYYQVEIDQLYEK 654 (660)
Q Consensus 589 ~~~~~~~~l~~~~~~~~l~~~~~p~~i~~~~~~~~~~~~P~t~~GKv~R~~l~~~~~~~l~~~y~~ 654 (660)
.++|++++++..||.|++|+.|+++ +.+|+|++||++|++|++++.++|+++|++
T Consensus 485 -----~~~l~~~l~~~~L~~~~~P~~i~~v------~~lP~t~~GKi~r~~L~~~~~~~i~~~y~~ 539 (539)
T 1mdb_A 485 -----AAELKAFLRERGLAAYKIPDRVEFV------ESFPQTGVGKVSKKALREAISEKLLAGFKK 539 (539)
T ss_dssp -----HHHHHHHHHHTTCCGGGSCSEEEEC------SSCCBCTTSCBCHHHHHHHHHHHHHTC---
T ss_pred -----HHHHHHHHHhCCCCcccCCCEEEEe------ccCCCCCCcCEeHHHHHHHHHHHHhccccC
Confidence 1234444443459999999999987 456999999999999999999999999974
No 2
>3ni2_A 4-coumarate:COA ligase; 4CL, phenylpropanoid biosynthesis; HET: AYL EPE; 1.90A {Populus tomentosa} PDB: 3a9v_A* 3a9u_A*
Probab=100.00 E-value=5.5e-75 Score=640.17 Aligned_cols=522 Identities=25% Similarity=0.312 Sum_probs=422.5
Q ss_pred CCCCCceeccccCCCCCCCCCCCCcHHHHHHHHHHhCCCCCceeeeccccCCCCCceEEeHHHHHHHHHHHHHHHHHcCC
Q 006115 19 PSVGPVYRNLLASNGFPSVDSDLNTAWDIFSMSVQKYPGNRMLGWRPFVDGKFGPYVWKTYKEVYEEVLQIVSALRASGA 98 (660)
Q Consensus 19 ~~~~~~~r~~~~~~~~~~~~~~~~ti~~~l~~~a~~~pd~~a~~~~~~~~~~~~~~~~~Ty~el~~~~~~lA~~L~~~gv 98 (660)
|.+..+|++...+..+| ...++.++|.++++++||++|+++. ++. +++||+||.++++++|++|++.|+
T Consensus 3 ~~~~~i~~~~~~~~~~p----~~~~l~~~l~~~a~~~p~~~a~~~~---~~~----~~~Ty~el~~~~~~lA~~L~~~Gv 71 (536)
T 3ni2_A 3 PQEEFIFRSKLPDIYIP----KNLPLHSYVLENLSNHSSKPCLING---ANG----DVYTYADVELTARRVASGLNKIGI 71 (536)
T ss_dssp --CCCCBCCSSCCCCCC----SSCCHHHHHTTTGGGSTTSEEEEET---TTC----CEEEHHHHHHHHHHHHHHHHHTTC
T ss_pred cccceEEecCCCCCCCC----CCCcHHHHHHHHhhcCCCceEEEEC---CCC----CEEEHHHHHHHHHHHHHHHHHcCC
Confidence 34455777666554444 2478999999999999999999864 221 689999999999999999999999
Q ss_pred CCCCEEEEEeCChhhHHHHHHHHHhCCCeEeecCCCCChhhHHHHhhcccceEEEEccchhhhhhccccccccCccEEEE
Q 006115 99 EPGCRVGIYGANCPQWVEAMEACNALSLICVPLYDTLGPGAVNFILDHAEIDFVFVQDKKVKELLSPDCRSAQRLRVMVC 178 (660)
Q Consensus 99 ~~gd~V~l~~~n~~~~~~~~lA~~~~G~~~v~i~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~~~~~~~~~~i~~ 178 (660)
++||+|+++++|++++++++|||+++|++++|++|.++.+++.++++.++++++|++......+....... .. .++.
T Consensus 72 ~~gd~V~i~~~~~~~~~~~~la~~~~Gav~vpl~~~~~~~~l~~~l~~~~~~~~i~~~~~~~~~~~~~~~~--~~-~~~~ 148 (536)
T 3ni2_A 72 QQGDVIMLFLPSSPEFVLAFLGASHRGAIITAANPFSTPAELAKHAKASRAKLLITQACYYEKVKDFARES--DV-KVMC 148 (536)
T ss_dssp CTTCEEEEECCSSHHHHHHHHHHHHHTCEEEECCTTCCHHHHHHHHHHHTEEEEEECGGGTHHHHHHHHHH--TC-EEEE
T ss_pred CCCCEEEEEcCCcHHHHHHHHHHHHhCCEEeccCCCCCHHHHHHHHHhcCCEEEEEChHHHHHHHHHHhhc--Cc-eEEE
Confidence 99999999999999999999999999999999999999999999999999999999988766554332211 12 2344
Q ss_pred ecCCcHHHHHHHhhCCceeeeHHHHHhcCccCCccCCCCCCCCeEEEEecCCCCCCCceeeeccHhHHHHhhhccccccc
Q 006115 179 FTSLTAEQKEMAVQTGIKPYSWDEFLHLGKVNEMEILPPQPFNICTIMYTSGTSGDPKGVVLTHETIATFVSGVDLFLDQ 258 (660)
Q Consensus 179 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~i~~TSGTTG~pK~v~~th~~l~~~~~~~~~~~~~ 258 (660)
++... .....+.++...... ..+.....++++++|+|||||||.||+|++||+++++.+.........
T Consensus 149 ~~~~~-----------~~~~~~~~~~~~~~~-~~~~~~~~~~d~a~i~~TSGTTG~PKgv~~th~~l~~~~~~~~~~~~~ 216 (536)
T 3ni2_A 149 VDSAP-----------DGCLHFSELTQADEN-EAPQVDISPDDVVALPYSSGTTGLPKGVMLTHKGLITSVAQQVDGDNP 216 (536)
T ss_dssp SSCCC-----------TTCEETHHHHTSCGG-GCCCCCCCTTSEEECCEECTTSSSCEEEEEEHHHHHHHHHHHHCSSSC
T ss_pred ecCCC-----------CCccCHHHHhhcccc-ccccCCCCccCEEEEEcCCCccccchHHHhhHHHHHHHHHHHHhhccc
Confidence 43321 123456666554322 223345678999999999999999999999999999887665432110
Q ss_pred ccCCCCCCcEEEEecChhhHHHHHH-HHHHhhcCcEEEEecC-ChHHHHHHhhhhcCeEEEechHHHHHHHHHHHHHHHh
Q 006115 259 FEDKMTVDDVYLSFLPLAHILDRVI-EEYFFRRGASVGYYHG-DLNALRDDLMELKPTLLAGVPRVFEKIHEGIKKALEE 336 (660)
Q Consensus 259 ~~~~~~~~d~~l~~~p~~~~~g~~~-~~~~l~~G~~~v~~~~-~~~~~~~~i~~~~~t~l~~~p~~~~~l~~~~~~~~~~ 336 (660)
...+.++|++++.+|++|.+++.. ++.++..|+++++.+. ++..+++.++++++|+++++|+++..+++..
T Consensus 217 -~~~~~~~d~~l~~~p~~h~~~~~~~~~~~l~~G~~~v~~~~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~------ 289 (536)
T 3ni2_A 217 -NLYFHSEDVILCVLPMFHIYALNSIMLCGLRVGAPILIMPKFEIGSLLGLIEKYKVSIAPVVPPVMMSIAKSP------ 289 (536)
T ss_dssp -SSCCCTTCCEEECSCTTSHHHHHHTHHHHHHHTCCEEECSSCCHHHHHHHHHHHTCCEEEECHHHHHHHHTCS------
T ss_pred -cccCCCCCEEEEecChHHHHHHHHHHHHHHhcCCEEEEcCCCCHHHHHHHHHHhCCeEEEccHHHHHHHHhCc------
Confidence 115788999999999999999865 6778999999999876 9999999999999999999999999886421
Q ss_pred hchHHHHHHHHHHHHHHHHHhcCCCCCCcchhHHHHHHHHHHHHhCCcEeEEEEccCCCCHHHHHHHHHhc-CCceeeec
Q 006115 337 LRPLRRRIFDALYKYKLAWMNMGYKQREASPLADLLAFRKVKARLGGRLRLVISGGAPLSTEVEEFLRVTC-CAFLVQGY 415 (660)
Q Consensus 337 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~slr~v~~~G~~l~~~~~~~~~~~~-~~~v~~~Y 415 (660)
..+..+ .++||.+++||+++++++.+.+++.+ ++++++.|
T Consensus 290 -------------------------------~~~~~~--------l~~lr~i~~gGe~l~~~~~~~~~~~~~~~~l~~~Y 330 (536)
T 3ni2_A 290 -------------------------------DLDKHD--------LSSLRMIKSGGAPLGKELEDTVRAKFPQARLGQGY 330 (536)
T ss_dssp -------------------------------CGGGSC--------CTTCCEEEEESSCCCHHHHHHHHHHCTTSEEEEEE
T ss_pred -------------------------------ccccCC--------CccceEEEECCCCCCHHHHHHHHHHCCCCCccccc
Confidence 111111 24899999999999999999999988 89999999
Q ss_pred CCCCCCCceeccc----CCCccccCccCCCccCeeEEeeecCCCCCCCCCCCCCceEEEccCCcccccCCCchhhhhcc-
Q 006115 416 GLTETCGPTTVCF----PDEMCMVGTAGPVSVYSELRLEEVPEMGYSPLDDPPCGEVCVRGKTLFSGYYKNPDLTRESI- 490 (660)
Q Consensus 416 G~tE~~~~~~~~~----~~~~~~~~~~G~~~~~~~v~iv~~~~~~~~~~~~g~~GEi~v~g~~~~~gy~~~~~~~~~~f- 490 (660)
|+||++.+++.+. .......+++|.|+++++++|+| ++++ .+++.|+.|||+|+|++++.||+++++.+.+.|
T Consensus 331 G~TE~~~~~~~~~~~~~~~~~~~~~~~G~~~~~~~~~i~d-~~~~-~~~~~g~~GEl~v~g~~v~~GY~~~p~~t~~~~~ 408 (536)
T 3ni2_A 331 GMTEAGPVLAMCLAFAKEPFDIKPGACGTVVRNAEMKIVD-PETG-ASLPRNQPGEICIRGDQIMKGYLNDPEATSRTID 408 (536)
T ss_dssp ECGGGSSEEEECGGGSSSCCCCCTTCCCEECSSCEEEEEC-TTTC-CBCCTTCCEEEEEESTTSCSEETTCHHHHHHHBC
T ss_pred cccccchhhhcccccCCccccCCCCCeeEeCCCcEEEEEe-CCCC-cCCCCCCccEEEEeCcccchhhcCChhHHHhhcc
Confidence 9999998765542 11233458899999999999999 5433 455678999999999999999999999999999
Q ss_pred cCCccccCceEEECCCCcEEEEeccCCeeEcCCCeeecchhHHHHHhcCcCcceEEEEecCCC---CeEEEEEEcChhhH
Q 006115 491 IDGWFHTGDIGQILPNGVVKIIDRKKNLIKISQGEYVALEYLENVYCVAPIIEDIWVYGDSLK---SMLVAVVVPCEEDT 567 (660)
Q Consensus 491 ~~g~~~TGDl~~~~~~G~l~~~GR~~d~i~~~~G~~v~~~~iE~~l~~~p~V~~~~v~~~~~~---~~~~a~v~~~~~~~ 567 (660)
.+|||+|||+|++|+||+++++||.||+||+ +|++|+|.+||++|.+||+|.+|+|++.+++ +.++|+|+..++.
T Consensus 409 ~~g~~~TGDl~~~~~dG~l~~~GR~dd~ik~-~G~~v~p~eIE~~l~~~p~V~~a~Vv~~~~~~~g~~~~a~vv~~~~~- 486 (536)
T 3ni2_A 409 KEGWLHTGDIGYIDDDDELFIVDRLKELIKY-KGFQVAPAELEALLIAHPEISDAAVVGLKDEDAGEVPVAFVVKSEKS- 486 (536)
T ss_dssp TTSCEEEEEEEEECTTSCEEEEEECSCCEEE-TTEEECHHHHHHHHHTSTTEEEEEEEEEEETTTEEEEEEEEEECTTC-
T ss_pred CCCceEcccEEEEcCCceEEEEecccceEEE-CCEEECHHHHHHHHHhCCCcceEEEEeeecCCCCceeEEEEEecCCC-
Confidence 7999999999999999999999999999997 8999999999999999999999999986644 3788999887642
Q ss_pred HHHHHHCCCCCcHHHHhccHHHHHHHHHHHHHHHHHCCCCCceeeeEEEEecCCCCCCCCccccccccchHHHHHHHHH
Q 006115 568 KKWAYSNGHAGSFLELCSLVQLQNYILSELKNAAERNKLRGFEHIKGVILDPRPFDMERDLVTATLKKKRNKLLIYYQV 646 (660)
Q Consensus 568 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~l~~~~~p~~i~~~~~~~~~~~~P~t~~GKv~R~~l~~~~~~ 646 (660)
.. + .++|+++++ ++||.|++|+.++++ +.+|+|++||++|++|++++.+
T Consensus 487 -------~~--------~--------~~~l~~~l~-~~l~~~~~p~~i~~v------~~lP~t~~GKi~R~~L~~~~~~ 535 (536)
T 3ni2_A 487 -------QA--------T--------EDEIKQYIS-KQVIFYKRIKRVFFI------EAIPKAPSGKILRKNLKEKLAG 535 (536)
T ss_dssp -------CC--------C--------HHHHHHHHH-TTSCGGGCCSEEEEC------SCCCBCTTSCBCHHHHHTC---
T ss_pred -------CC--------C--------HHHHHHHHH-HhccCCccccEEEEE------ecCCCCCCCCeeHHHHHHHhcc
Confidence 00 1 123444443 789999999999987 4569999999999999988753
No 3
>3g7s_A Long-chain-fatty-acid--COA ligase (FADD-1); protein structure initiative, PSI-II, NYSGXRC, 11193J, structural genomics; 2.15A {Archaeoglobus fulgidus dsm 4304}
Probab=100.00 E-value=5e-75 Score=642.41 Aligned_cols=516 Identities=21% Similarity=0.231 Sum_probs=392.5
Q ss_pred CCCCCCCCCCCcHHHHHHHHHHhCCCCCceeeeccccC--CCCCceEEeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEeC
Q 006115 32 NGFPSVDSDLNTAWDIFSMSVQKYPGNRMLGWRPFVDG--KFGPYVWKTYKEVYEEVLQIVSALRASGAEPGCRVGIYGA 109 (660)
Q Consensus 32 ~~~~~~~~~~~ti~~~l~~~a~~~pd~~a~~~~~~~~~--~~~~~~~~Ty~el~~~~~~lA~~L~~~gv~~gd~V~l~~~ 109 (660)
.++|..+....++.++|+++|+++||++|+++. ++ ..+.++++||+||.++++++|++|.+.|+++||+|+++++
T Consensus 9 ~~~p~~~~~~~~l~~~l~~~a~~~p~~~A~~~~---~~~~~~~~~~~~Ty~el~~~~~~lA~~L~~~Gv~~gd~V~i~~~ 85 (549)
T 3g7s_A 9 IGFPSLYYPKISLADRIDAAAEKFGEKTAIISA---EPKFPSEFPESMNFLEICEVTKKLASGISRKGVRKGEHVGVCIP 85 (549)
T ss_dssp CCCCCCCCCCCCTTHHHHHHHHHHTTSEEEEEE---SSCCCCSSCSEEEHHHHHHHHHHHHHHHHHTTCCTTCEEEEECC
T ss_pred cCCCCCCcCCCCHHHHHHHHHHhCCCceEEEeC---CCcccccccceeeHHHHHHHHHHHHHHHHHcCCCCCCEEEEECC
Confidence 345555556789999999999999999999987 42 2334578999999999999999999999999999999999
Q ss_pred ChhhHHHHHHHHHhCCCeEeecCCCCChhhHHHHhhcccceEEEEccchhhhhhccccccccCccEEEEecCCcHHHHHH
Q 006115 110 NCPQWVEAMEACNALSLICVPLYDTLGPGAVNFILDHAEIDFVFVQDKKVKELLSPDCRSAQRLRVMVCFTSLTAEQKEM 189 (660)
Q Consensus 110 n~~~~~~~~lA~~~~G~~~v~i~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~ 189 (660)
|++++++++|||+++|++++|++|.++.+++.++|+.++++++|++......+...... .....++..+..
T Consensus 86 ~~~~~~~~~lA~~~~G~~~vpl~~~~~~~~l~~il~~~~~~~~i~~~~~~~~~~~~~~~--~~~~~~~~~~~~------- 156 (549)
T 3g7s_A 86 NSIDYVMTIYALWRVAATPVPINPMYKSFELEHILNDSEATTLVVHSMLYENFKPVLEK--TGVERVFVVGGE------- 156 (549)
T ss_dssp SSHHHHHHHHHHHHTTCEEEECCTTCCHHHHHHHHHHTTCSEEEEEGGGHHHHHHHHTT--SCCCEEEEETCS-------
T ss_pred CCHHHHHHHHHHHHhCCEEEccCCCCCHHHHHHHHHhcCCCEEEEChHHHHHHHHHHhh--CCCcEEEEeCCC-------
Confidence 99999999999999999999999999999999999999999999998876655433221 124445554421
Q ss_pred HhhCCceeeeHHHHHhcCccCCccCCCCCCCCeEEEEecCCCCCCCceeeeccHhHHHHhhhcccccccccCCCCCCcEE
Q 006115 190 AVQTGIKPYSWDEFLHLGKVNEMEILPPQPFNICTIMYTSGTSGDPKGVVLTHETIATFVSGVDLFLDQFEDKMTVDDVY 269 (660)
Q Consensus 190 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~i~~TSGTTG~pK~v~~th~~l~~~~~~~~~~~~~~~~~~~~~d~~ 269 (660)
..++.++...............++++++|+|||||||.||+|+++|+++.+.+..+...+ ++.++|++
T Consensus 157 -------~~~~~~~~~~~~~~~~~~~~~~~~d~a~i~~TSGTTG~PKgV~~sh~~l~~~~~~~~~~~-----~~~~~d~~ 224 (549)
T 3g7s_A 157 -------VNSLSEVMDSGSEDFENVKVNPEEDVALIPYTGGTTGMPKGVMLTHFNLAANALQLAVAT-----GLSHMDTI 224 (549)
T ss_dssp -------SSCHHHHHHHSCSCCCCCCCCTTTSEEECCEECCCCC-CEEEEEEHHHHHHHHHHHHHHH-----CCCTTCEE
T ss_pred -------CcCHHHHHhcCccccccccCCCCCCEEEEEECCCccCCCceEEEcHHHHHHHHHHHHHHc-----CCCCCCEE
Confidence 234555555443222222222348999999999999999999999999999998887777 78999999
Q ss_pred EEecChhhHHHHHHHHHHhhcCcEEEEecC-ChHHHHHHhhhhcCeEEEechHHHHHHHHHHHHHHHhhchHHHHHHHHH
Q 006115 270 LSFLPLAHILDRVIEEYFFRRGASVGYYHG-DLNALRDDLMELKPTLLAGVPRVFEKIHEGIKKALEELRPLRRRIFDAL 348 (660)
Q Consensus 270 l~~~p~~~~~g~~~~~~~l~~G~~~v~~~~-~~~~~~~~i~~~~~t~l~~~p~~~~~l~~~~~~~~~~~~~~~~~~~~~~ 348 (660)
++++|++|.+++...+.++..|+++++.+. ++..+++.++++++|+++++|+++..|++........
T Consensus 225 ~~~~p~~~~~~~~~~~~~l~~G~~~~~~~~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~------------ 292 (549)
T 3g7s_A 225 VGCMPMFHSAEFGLVNLMVTVGNEYVVMGMFNQEMLAENIEKYKGTFSWAVPPALNVLVNTLESSNKT------------ 292 (549)
T ss_dssp ECCSCTTSHHHHHHHTTHHHHCCEEEEESSCCHHHHHHHHHHTTCCEEEECHHHHHHHHHHHHHSCCC------------
T ss_pred EEeCcHHHHHHHHHHHHHHhcCceEEEcCCCCHHHHHHHHHHhCCeEEEeCCHHHHHHHhhhhhhccc------------
Confidence 999999999998887888999999999876 9999999999999999999999999987653321000
Q ss_pred HHHHHHHHhcCCCCCCcchhHHHHHHHHHHHHhCCcEeEEEEccCCCCHHHHHHHHHh----cC---CceeeecCCCCCC
Q 006115 349 YKYKLAWMNMGYKQREASPLADLLAFRKVKARLGGRLRLVISGGAPLSTEVEEFLRVT----CC---AFLVQGYGLTETC 421 (660)
Q Consensus 349 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~slr~v~~~G~~l~~~~~~~~~~~----~~---~~v~~~YG~tE~~ 421 (660)
. ..+++|.+++||+++++++.+.+.+. ++ +++++.||+||++
T Consensus 293 -----------------------~--------~~~~lr~~~~gg~~l~~~~~~~~~~~~~~~~~~~~~~~~~~YG~TE~~ 341 (549)
T 3g7s_A 293 -----------------------Y--------DWSYLKVFATGAWPVAPALVEKLLKLAAEKCNNPRLRHNQIWGMTEAC 341 (549)
T ss_dssp -----------------------C--------CCTTCCEEEEESSCCCHHHHHHHHHHHHHHSSCTTCEEEEEEECGGGS
T ss_pred -----------------------C--------CccceeEEEeCCccCCHHHHHHHHHHHHhhcCCccccccceEeccccc
Confidence 0 11489999999999999999999887 66 8999999999999
Q ss_pred CceecccCCCccccCccCCCccCeeEEeeecCCCCCCCCCCCCCceEEEccCCcccccCCCchhhhhcc---cCC--ccc
Q 006115 422 GPTTVCFPDEMCMVGTAGPVSVYSELRLEEVPEMGYSPLDDPPCGEVCVRGKTLFSGYYKNPDLTRESI---IDG--WFH 496 (660)
Q Consensus 422 ~~~~~~~~~~~~~~~~~G~~~~~~~v~iv~~~~~~~~~~~~g~~GEi~v~g~~~~~gy~~~~~~~~~~f---~~g--~~~ 496 (660)
.+++...........++|.|+++++++|+| ++++ .+++.|+.|||+|+|++++.||+++++.+.+.| .+| ||+
T Consensus 342 ~~~~~~~~~~~~~~~~~G~p~~~~~~~i~d-~~~g-~~~~~g~~GEl~v~g~~v~~GY~~~~~~t~~~f~~~~~g~~~~~ 419 (549)
T 3g7s_A 342 PMVTTNPPLRLDKSTTQGVPMSDIELKVIS-LEDG-RELGVGESGEIVIRGPNIFKGYWKREKENQECWWYDEKGRKFFR 419 (549)
T ss_dssp SEEEECCGGGGGGTTSCCEECTTCEEEEEC-SSSC-CEECTTCCEEEEEESTTSCSEETTCTTGGGTSEEECTTCCEEEE
T ss_pred hhhhcCCccccCcCCCccccCCCCEEEEEe-CCCC-cCCCCCCceEEEEECcchhhhhCCChhhhhhhhhccCCCCceEc
Confidence 887776655545568999999999999999 4433 456677899999999999999999999999998 678 999
Q ss_pred cCceEEECCCCcEEEEeccCCeeEcCCCeeecchhHHHHHhcCcCcceEEEEecCCC---CeEEEEEEcChhhHHHHHHH
Q 006115 497 TGDIGQILPNGVVKIIDRKKNLIKISQGEYVALEYLENVYCVAPIIEDIWVYGDSLK---SMLVAVVVPCEEDTKKWAYS 573 (660)
Q Consensus 497 TGDl~~~~~~G~l~~~GR~~d~i~~~~G~~v~~~~iE~~l~~~p~V~~~~v~~~~~~---~~~~a~v~~~~~~~~~~~~~ 573 (660)
|||+|++|+||+|+++||.||+||+ +|++|+|.+||++|.+||+|.+|+|++.+++ +.++|+|+++++...
T Consensus 420 TGDl~~~~~dG~l~~~GR~dd~ik~-~G~~v~p~eIE~~l~~~p~V~~a~Vv~~~~~~~g~~~~a~vv~~~~~~~----- 493 (549)
T 3g7s_A 420 TGDVGFIDEEGFLHFQDRVKEVIKY-KGYTIAPFELEALLMKHEAVMDVAVIGKPDEEAGEVPKAFIVLKPEYRG----- 493 (549)
T ss_dssp EEEEEEECTTSCEEEEEEC-------------CHHHHHHHTTSTTEEEEEEECCCC------CEEEEEECSTTTT-----
T ss_pred cCcEEEEcCCceEEEeccccceEEE-CCEEECHHHHHHHHHhCCCeeeEEEEeeEccccCceEEEEEEECCCccC-----
Confidence 9999999999999999999999997 8999999999999999999999999998765 368899998765200
Q ss_pred CCCCCcHHHHhccHHHHHHHHHHHHHHHHHCCCCCceeeeEEEEecCCCCCCCCccccccccchHHHHHHHHH
Q 006115 574 NGHAGSFLELCSLVQLQNYILSELKNAAERNKLRGFEHIKGVILDPRPFDMERDLVTATLKKKRNKLLIYYQV 646 (660)
Q Consensus 574 ~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~l~~~~~p~~i~~~~~~~~~~~~P~t~~GKv~R~~l~~~~~~ 646 (660)
.. + .++|+++++ ++||.|++|+.|++++ .+|+|++||++|++|++++.+
T Consensus 494 -~~--------~--------~~~l~~~l~-~~L~~~~~P~~i~~v~------~lP~t~~GKi~R~~L~~~~~~ 542 (549)
T 3g7s_A 494 -KV--------D--------EEDIIEWVR-ERISGYKRVREVEFVE------ELPRTASGKLLRRLLREKEAE 542 (549)
T ss_dssp -SC--------C--------HHHHHHHHH-TTCC-----CCCCEEE------ECC------------------
T ss_pred -cC--------C--------HHHHHHHHH-HhccCcccceEEEEec------cCCCCCCcCEeHHHHHHHhhc
Confidence 00 1 123444443 7899999999999884 459999999999999998865
No 4
>3etc_A AMP-binding protein; adenylate-forming acyl-COA synthetase ligase, ligase; HET: PGE 1PE EPE; 2.10A {Methanosarcina acetivorans}
Probab=100.00 E-value=1e-73 Score=633.98 Aligned_cols=510 Identities=17% Similarity=0.152 Sum_probs=400.4
Q ss_pred CCCCCcHHHHHHHHHHhCCCCCceeeeccccCCCCCceEEeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEeCChhhHHHH
Q 006115 38 DSDLNTAWDIFSMSVQKYPGNRMLGWRPFVDGKFGPYVWKTYKEVYEEVLQIVSALRASGAEPGCRVGIYGANCPQWVEA 117 (660)
Q Consensus 38 ~~~~~ti~~~l~~~a~~~pd~~a~~~~~~~~~~~~~~~~~Ty~el~~~~~~lA~~L~~~gv~~gd~V~l~~~n~~~~~~~ 117 (660)
+..++.+.++|+++|+++||++|+++. +. .+..+++||+||.++++++|++|++.|+++||+|+++++|+++++++
T Consensus 52 ~~~~n~~~~~l~~~a~~~pd~~Al~~~---~~-~g~~~~~Ty~eL~~~~~~~A~~L~~~Gv~~Gd~V~l~~~~~~e~~~~ 127 (580)
T 3etc_A 52 PENFNFAYDVVDVYARDSPEKLAMIWC---DD-YGNEKIFTFKDLKYYSDKAANFFVKHGIGKGDYVMLTLKSRYDFWYC 127 (580)
T ss_dssp CSSCCHHHHTHHHHHHHCTTCEEEEEE---ES-SSCEEEEEHHHHHHHHHHHHHHHHHTTCCTTCEEEEECTTCTHHHHH
T ss_pred cccchHHHHHHHHHHhhCCCCEEEEEE---cC-CCCEeEEeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEcCCCHHHHHH
Confidence 456777889999999999999999986 43 23457999999999999999999999999999999999999999999
Q ss_pred HHHHHhCCCeEeecCCCCChhhHHHHhhcccceEEEEccchh--hhhhccccccccCc-cEEEEecCCcHHHHHHHhhCC
Q 006115 118 MEACNALSLICVPLYDTLGPGAVNFILDHAEIDFVFVQDKKV--KELLSPDCRSAQRL-RVMVCFTSLTAEQKEMAVQTG 194 (660)
Q Consensus 118 ~lA~~~~G~~~v~i~~~~~~~~l~~~l~~~~~~~vi~~~~~~--~~~~~~~~~~~~~~-~~i~~~~~~~~~~~~~~~~~~ 194 (660)
+|||+++|++++|+++.++.+++.++|+.++++++|++.+.. ..+.... ...+.. ..++.++... .
T Consensus 128 ~lA~~~~Gav~vpl~~~~~~~~l~~~l~~~~~~~ii~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~----------~ 196 (580)
T 3etc_A 128 MLGLHKLGAIAVPATHMLKTRDIVYRIEKAGLKMIVCIAEDDVPEQVDEAH-AECGDIPLKKAKVGGDV----------L 196 (580)
T ss_dssp HHHHHHHTCEEEECCTTCCHHHHHHHHHHHTCCEEEEESSTTHHHHHHHHH-HHHCSCCCEEEEESSSC----------C
T ss_pred HHHHHhCCEEEEeCCccCCHHHHHHHHHhcCCCEEEEecchhHHHHHHHHh-hhCCCcceEEEEeCCcc----------c
Confidence 999999999999999999999999999999999999987654 3222211 122222 3344443221 1
Q ss_pred ceeeeHHHHHhcCccCCccC---CCCCCCCeEEEEecCCCCCCCceeeeccHhHHHHhhhcccccccccCCCCCCcEEEE
Q 006115 195 IKPYSWDEFLHLGKVNEMEI---LPPQPFNICTIMYTSGTSGDPKGVVLTHETIATFVSGVDLFLDQFEDKMTVDDVYLS 271 (660)
Q Consensus 195 ~~~~~~~~~~~~~~~~~~~~---~~~~~~~~a~i~~TSGTTG~pK~v~~th~~l~~~~~~~~~~~~~~~~~~~~~d~~l~ 271 (660)
..+.++.+.+.......... ....++++++|+|||||||.||+|.++|.+++..+......+ ++..++++++
T Consensus 197 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~a~i~~TSGTTG~PKgV~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~ 271 (580)
T 3etc_A 197 EGWIDFRKELEESSPIFERPTGEVSTKNEDICLVYFSSGTAGFPKMVEHDNTYPLGHILTAKYWQ-----NVEDDGLHYT 271 (580)
T ss_dssp TTCEEHHHHHHHSCSCCCCCCGGGSCCTTSEEEEEEECCSSSSCEEEEEETTHHHHHHHHHHTTS-----CCCTTCEEEE
T ss_pred cccccHHHHHhhCCcccccCccccCCCCCCcEEEEEeCCCCCCccEEEeccHHHHHHHHHHHHhh-----CCCCCceEEE
Confidence 23456666665443221111 246789999999999999999999999999888776655444 7889999999
Q ss_pred ecChhhHHHHHH-HHHHhhcCcEEEEecC---ChHHHHHHhhhhcCeEEEechHHHHHHHHHHHHHHHhhchHHHHHHHH
Q 006115 272 FLPLAHILDRVI-EEYFFRRGASVGYYHG---DLNALRDDLMELKPTLLAGVPRVFEKIHEGIKKALEELRPLRRRIFDA 347 (660)
Q Consensus 272 ~~p~~~~~g~~~-~~~~l~~G~~~v~~~~---~~~~~~~~i~~~~~t~l~~~p~~~~~l~~~~~~~~~~~~~~~~~~~~~ 347 (660)
..|+.|..++.. ++.++..|+++++.+. ++..+++.++++++|+++++|++++.|.+..
T Consensus 272 ~~~~~~~~~~~~~~~~~l~~G~~~~~~~~~~~~~~~~~~~i~~~~vt~~~~~P~~~~~l~~~~----------------- 334 (580)
T 3etc_A 272 VADSGWGKCVWGKLYGQWIAGCAVFVYDYDRFEAKNMLEKASKYGVTTFCAPPTIYRFLIKED----------------- 334 (580)
T ss_dssp CCCTTSTHHHHHTTHHHHHTTCEEEEEECSSCCHHHHHHHHHHHTCCEEEECHHHHHHHHTSC-----------------
T ss_pred eCChHHHHHHHHHHHHHHhCCcEEEEecCCCCCHHHHHHHHHHHCCeEEEccHHHHHHHHhcc-----------------
Confidence 999999888775 6677899999988742 8999999999999999999999999886420
Q ss_pred HHHHHHHHHhcCCCCCCcchhHHHHHHHHHHHHhCCcEeEEEEccCCCCHHHHHHHHHhcCCceeeecCCCCCCCceecc
Q 006115 348 LYKYKLAWMNMGYKQREASPLADLLAFRKVKARLGGRLRLVISGGAPLSTEVEEFLRVTCCAFLVQGYGLTETCGPTTVC 427 (660)
Q Consensus 348 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~slr~v~~~G~~l~~~~~~~~~~~~~~~v~~~YG~tE~~~~~~~~ 427 (660)
... ...++||.+++||+++++++.++|.+.+|+++++.||+||++..++..
T Consensus 335 ---------------------~~~--------~~l~~lr~i~~gGe~l~~~~~~~~~~~~g~~i~~~YG~TE~~~~~~~~ 385 (580)
T 3etc_A 335 ---------------------LSH--------YNFSTLKYAVVAGEPLNPEVFNRFLEFTGIKLMEGFGQTETVVTIATF 385 (580)
T ss_dssp ---------------------C-----------CCTTCCEEEECSSCCCHHHHHHHHHHHSCCCEEEECCTTSSCCEECC
T ss_pred ---------------------ccc--------CCCccceEEEEccCCCCHHHHHHHHHHhCCeEecccccccccceeecC
Confidence 001 112489999999999999999999998999999999999998776655
Q ss_pred cCCCccccCccCCCccCeeEEeeecCCCCCCCCCCCCCceEEEcc-----CCcccccCCCchhhhhcccCCccccCceEE
Q 006115 428 FPDEMCMVGTAGPVSVYSELRLEEVPEMGYSPLDDPPCGEVCVRG-----KTLFSGYYKNPDLTRESIIDGWFHTGDIGQ 502 (660)
Q Consensus 428 ~~~~~~~~~~~G~~~~~~~v~iv~~~~~~~~~~~~g~~GEi~v~g-----~~~~~gy~~~~~~~~~~f~~g~~~TGDl~~ 502 (660)
+.. ....+++|+|+++++++|+| +++. +++.|+.|||+|+| +.++.||+++++.+.+.|.+|||+|||+|+
T Consensus 386 ~~~-~~~~~~~G~p~~~~~v~ivd-~~g~--~~~~g~~GEl~v~~~~g~~~~~~~gY~~~p~~t~~~f~~gwy~TGDlg~ 461 (580)
T 3etc_A 386 PWM-EPKPGSIGKPTPGYKIELMD-RDGR--LCEVGEEGEIVINTMEGKPVGLFVHYGKDPERTEETWHDGYYHTGDMAW 461 (580)
T ss_dssp TTS-CCCTTCCBEECTTCEEEEEC-TTSC--BCCTTCCEEEEEECTTCCCTTCCCEETTCHHHHHHHEETTEEEEEEEEE
T ss_pred CCC-CCCCCccccCCCCCEEEEEC-CCCC--CCCCCCceEEEEecCCCCCCeeeccccCCHhHHHhhcCCCEEecCcEEE
Confidence 443 33458999999999999999 6654 55667899999997 789999999999999999999999999999
Q ss_pred ECCCCcEEEEeccCCeeEcCCCeeecchhHHHHHhcCcCcceEEEEecCCC---CeEEEEEEcChhhHHHHHHHCCCCCc
Q 006115 503 ILPNGVVKIIDRKKNLIKISQGEYVALEYLENVYCVAPIIEDIWVYGDSLK---SMLVAVVVPCEEDTKKWAYSNGHAGS 579 (660)
Q Consensus 503 ~~~~G~l~~~GR~~d~i~~~~G~~v~~~~iE~~l~~~p~V~~~~v~~~~~~---~~~~a~v~~~~~~~~~~~~~~~~~~~ 579 (660)
+|+||+++++||.||+||+ +|++|+|.+||++|.+||.|.+|+|++.+++ ..++|+|++.++..
T Consensus 462 ~d~dG~l~~~GR~dd~Ik~-~G~~I~p~eIE~~l~~~p~V~~a~Vvg~~~~~~g~~~~a~vv~~~~~~------------ 528 (580)
T 3etc_A 462 MDEDGYLWFVGRADDIIKT-SGYKVGPFEVESALIQHPAVLECAITGVPDPVRGQVIKATIVLTKDYT------------ 528 (580)
T ss_dssp ECTTSCEEEEEESSSCEEE-TTEEECHHHHHHHHTTSTTEEEEEEEEEEETTTEEEEEEEEEECTTCC------------
T ss_pred ECCCCcEEEEecCCCEEEE-CCEEECHHHHHHHHHhCCCeeeEEEEeeeccCCCcEEEEEEEECCCCC------------
Confidence 9999999999999999997 6999999999999999999999999997765 37889999887531
Q ss_pred HHHHhccHHHHHHHHHHHHHHHHHCCCCCceeeeEEEEecCCCCCCCCccccccccchHHHHHHHHH
Q 006115 580 FLELCSLVQLQNYILSELKNAAERNKLRGFEHIKGVILDPRPFDMERDLVTATLKKKRNKLLIYYQV 646 (660)
Q Consensus 580 ~~~~~~~~~~~~~~~~~l~~~~~~~~l~~~~~p~~i~~~~~~~~~~~~P~t~~GKv~R~~l~~~~~~ 646 (660)
..+++ .++|+++++ ..||.|++|+.|++++ .+|+|++||++|++|++++++
T Consensus 529 -----~~~~~----~~~l~~~l~-~~l~~~~~P~~i~~v~------~lP~t~sGKi~R~~Lr~~~~~ 579 (580)
T 3etc_A 529 -----PSDSL----KNELQDHVK-NVTAPYKYPRIIEFVP------ELPKTISGKIRRVEIRDKDQS 579 (580)
T ss_dssp -----CCHHH----HHHHHHHHH-HHSCGGGCCSEEEEEC------C--------------------
T ss_pred -----CCHHH----HHHHHHHHH-hhCCCccCCeEEEEeC------CCCCCCCcCCcHHHHHhHhhc
Confidence 12222 344455554 6799999999999984 469999999999999998865
No 5
>1v25_A Long-chain-fatty-acid-COA synthetase; ligase, structural genomics, riken structural genomics/proteomics initiative, RSGI; HET: ANP; 2.30A {Thermus thermophilus} SCOP: e.23.1.1 PDB: 1ult_A* 1v26_A*
Probab=100.00 E-value=3.4e-74 Score=634.24 Aligned_cols=503 Identities=24% Similarity=0.291 Sum_probs=384.4
Q ss_pred CCcHHHHHHHHHHhCCCCCceeeeccccCCCCCceEEeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEeCChhhHHHHHHH
Q 006115 41 LNTAWDIFSMSVQKYPGNRMLGWRPFVDGKFGPYVWKTYKEVYEEVLQIVSALRASGAEPGCRVGIYGANCPQWVEAMEA 120 (660)
Q Consensus 41 ~~ti~~~l~~~a~~~pd~~a~~~~~~~~~~~~~~~~~Ty~el~~~~~~lA~~L~~~gv~~gd~V~l~~~n~~~~~~~~lA 120 (660)
..++.++|.++++++||++|+++. +. +..+++||+||.++++++|++|++.|+++||+|+++++|++++++++||
T Consensus 17 ~~~l~~~l~~~a~~~p~~~a~~~~---~~--~~~~~~Ty~el~~~~~~lA~~L~~~Gv~~gd~V~i~~~n~~e~~~~~lA 91 (541)
T 1v25_A 17 ELNLWDFLERAAALFGRKEVVSRL---HT--GEVHRTTYAEVYQRARRLMGGLRALGVGVGDRVATLGFNHFRHLEAYFA 91 (541)
T ss_dssp CCCTHHHHHHHHHHSTTCEEEEEC---TT--SCEEEEEHHHHHHHHHHHHHHHHHTTCCTTCEEEEECCSSHHHHHHHHH
T ss_pred CCCHHHHHHHHHHhCCCceEEEEe---cC--CCCceecHHHHHHHHHHHHHHHHHcCCCCCCEEEEEcCCcHHHHHHHHH
Confidence 368999999999999999999864 21 2347899999999999999999999999999999999999999999999
Q ss_pred HHhCCCeEeecCCCCChhhHHHHhhcccceEEEEccchhhhhhccccccccCccEEEEecCCcHHHHHHHhhCCceeeeH
Q 006115 121 CNALSLICVPLYDTLGPGAVNFILDHAEIDFVFVQDKKVKELLSPDCRSAQRLRVMVCFTSLTAEQKEMAVQTGIKPYSW 200 (660)
Q Consensus 121 ~~~~G~~~v~i~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~ 200 (660)
|+++|++++|++|.++.+++.++|+.++++++|++......+... ....+....++.++.... .....+
T Consensus 92 ~~~~Gav~vpl~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~----------~~~~~~ 160 (541)
T 1v25_A 92 VPGMGAVLHTANPRLSPKEIAYILNHAEDKVLLFDPNLLPLVEAI-RGELKTVQHFVVMDEKAP----------EGYLAY 160 (541)
T ss_dssp HHHTTCEEEECCTTSCHHHHHHHHHHHTCSEEEECGGGHHHHHHH-GGGCSSCCEEEESSSCCC----------TTCEEH
T ss_pred HHhcCcEEEecCcccCHHHHHHHHHhCCCcEEEEChhHHHHHHHH-HhhCCCccEEEEecCCCC----------cccccH
Confidence 999999999999999999999999999999999998766544332 222344555655543211 012355
Q ss_pred HHHHhcCccCCccCCCCCCCCeEEEEecCCCCCCCceeeeccHhHHHHhhhc--ccccccccCCCCCCcEEEEecChhhH
Q 006115 201 DEFLHLGKVNEMEILPPQPFNICTIMYTSGTSGDPKGVVLTHETIATFVSGV--DLFLDQFEDKMTVDDVYLSFLPLAHI 278 (660)
Q Consensus 201 ~~~~~~~~~~~~~~~~~~~~~~a~i~~TSGTTG~pK~v~~th~~l~~~~~~~--~~~~~~~~~~~~~~d~~l~~~p~~~~ 278 (660)
.++...... .....++++++|+|||||||.||+|++||++++..+... ...+ +++++|++++++|++|.
T Consensus 161 ~~~~~~~~~----~~~~~~~~~a~i~~TSGTTG~PKgV~~sh~~l~~~~~~~~~~~~~-----~~~~~d~~l~~~p~~h~ 231 (541)
T 1v25_A 161 EEALGEEAD----PVRVPERAACGMAYTTGTTGLPKGVVYSHRALVLHSLAASLVDGT-----ALSEKDVVLPVVPMFHV 231 (541)
T ss_dssp HHHCCSCCC----CCCCCTTSEEEEEEECSSSSSCEEEEEEHHHHHHHHHHTTSTTTT-----CCCTTCEEEECSCTTSH
T ss_pred HHHhhccCC----cccCCCCCcEEEEECCCCCCCCcEeeeehHHHHHHHhhhhhcccc-----cCCCCCEEEEeccchhh
Confidence 555433211 134567899999999999999999999999998776542 2223 67899999999999999
Q ss_pred HHHHHHHHHhhcCcEEEEecC--ChHHHHHHhhhhcCeEEEechHHHHHHHHHHHHHHHhhchHHHHHHHHHHHHHHHHH
Q 006115 279 LDRVIEEYFFRRGASVGYYHG--DLNALRDDLMELKPTLLAGVPRVFEKIHEGIKKALEELRPLRRRIFDALYKYKLAWM 356 (660)
Q Consensus 279 ~g~~~~~~~l~~G~~~v~~~~--~~~~~~~~i~~~~~t~l~~~p~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 356 (660)
+++...+.++..|+++++.+. ++..+++.++++++|+++++|+++..|++......
T Consensus 232 ~~~~~~~~~l~~G~~~v~~~~~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~---------------------- 289 (541)
T 1v25_A 232 NAWCLPYAATLVGAKQVLPGPRLDPASLVELFDGEGVTFTAGVPTVWLALADYLESTG---------------------- 289 (541)
T ss_dssp HHHTHHHHHHHHTCEEEECTTCCSHHHHHHHHHHTTCCEEEECHHHHHHHHHHHHHHT----------------------
T ss_pred hHHHHHHHHHhcCceEEeeCCCCCHHHHHHHHHhcCeeEEecchHHHHHHHhhhhccC----------------------
Confidence 998777888999999999874 89999999999999999999999999876533211
Q ss_pred hcCCCCCCcchhHHHHHHHHHHHHhCCcEeEEEEccCCCCHHHHHHHHHhcCCceeeecCCCCCCCceecccCCC-----
Q 006115 357 NMGYKQREASPLADLLAFRKVKARLGGRLRLVISGGAPLSTEVEEFLRVTCCAFLVQGYGLTETCGPTTVCFPDE----- 431 (660)
Q Consensus 357 ~~~~~~~~~~~~~~~~~~~~~~~~~~~slr~v~~~G~~l~~~~~~~~~~~~~~~v~~~YG~tE~~~~~~~~~~~~----- 431 (660)
...++||.+++||+++++++.+.+ +.+|+++++.||+||++.+++......
T Consensus 290 -----------------------~~l~~lr~i~~gG~~l~~~~~~~~-~~~g~~~~~~YG~TE~~~~~~~~~~~~~~~~~ 345 (541)
T 1v25_A 290 -----------------------HRLKTLRRLVVGGSAAPRSLIARF-ERMGVEVRQGYGLTETSPVVVQNFVKSHLESL 345 (541)
T ss_dssp -----------------------CCCSSCCEEEECSSCCCHHHHHHH-HHTTCEEEEEEECGGGSSEEEECCCCGGGTTS
T ss_pred -----------------------CcchhccEEEECCCCCCHHHHHHH-HHhCCceeecccccccccceeccccccccccc
Confidence 011489999999999999999999 567999999999999998776654331
Q ss_pred -----ccccCccCCCccCeeEEeeecCCCCCCCCCCCCCceEEEccCCcccccCCCchhhhhcc-cCCccccCceEEECC
Q 006115 432 -----MCMVGTAGPVSVYSELRLEEVPEMGYSPLDDPPCGEVCVRGKTLFSGYYKNPDLTRESI-IDGWFHTGDIGQILP 505 (660)
Q Consensus 432 -----~~~~~~~G~~~~~~~v~iv~~~~~~~~~~~~g~~GEi~v~g~~~~~gy~~~~~~~~~~f-~~g~~~TGDl~~~~~ 505 (660)
.....++|+|+++++++|+| +++...+.+.++.|||+|+||.++.||+++++.+.+.| .+|||+|||+|++|+
T Consensus 346 ~~~~~~~~~~~~G~p~~~~~~~i~d-~~g~~~~~~~~~~GEl~v~g~~v~~GY~~~p~~t~~~f~~~g~~~TGDlg~~d~ 424 (541)
T 1v25_A 346 SEEEKLTLKAKTGLPIPLVRLRVAD-EEGRPVPKDGKALGEVQLKGPWITGGYYGNEEATRSALTPDGFFRTGDIAVWDE 424 (541)
T ss_dssp CHHHHHHHHTSCBEECTTCEEEEEC-TTSCBCCSSSCCCEEEEEESTTSBSSCBTCHHHHHTTBCTTSCEEEEEEEEECT
T ss_pred CccccccccCCCCCcCCCcEEEEEC-CCCCCCCCCCCcceEEEEeCcchhccccCChhhhhhhccCCCCeEcCCEEEEcC
Confidence 12347899999999999999 77665554445789999999999999999999999999 499999999999999
Q ss_pred CCcEEEEeccCCeeEcCCCeeecchhHHHHHhcCcCcceEEEEecCCC---CeEEEEEEcChhhHHHHHHHCCCCCcHHH
Q 006115 506 NGVVKIIDRKKNLIKISQGEYVALEYLENVYCVAPIIEDIWVYGDSLK---SMLVAVVVPCEEDTKKWAYSNGHAGSFLE 582 (660)
Q Consensus 506 ~G~l~~~GR~~d~i~~~~G~~v~~~~iE~~l~~~p~V~~~~v~~~~~~---~~~~a~v~~~~~~~~~~~~~~~~~~~~~~ 582 (660)
||+++++||.||+||+ +|++|+|.+||++|.+||+|.+|+|++.+++ +.++|+|++.... .
T Consensus 425 dG~l~~~GR~~d~ik~-~G~~v~p~eIE~~l~~~p~V~~a~Vv~~~~~~~~~~~~a~vv~~~~~---------~------ 488 (541)
T 1v25_A 425 EGYVEIKDRLKDLIKS-GGEWISSVDLENALMGHPKVKEAAVVAIPHPKWQERPLAVVVPRGEK---------P------ 488 (541)
T ss_dssp TCCEEEEEESSCEEEE-TTEEEEHHHHHCC----------CEEEEECSSSSEEEEECC----------------------
T ss_pred CceEEEeecccceeee-CCEEECHHHHHHHHHhCCCceEEEEEEecCCCcCceEEEEEEECCCC---------C------
Confidence 9999999999999996 8999999999999999999999999997765 3788888876211 0
Q ss_pred HhccHHHHHHHHHHHHHHHHHCCCCCceeeeEEEEecCCCCCCCCccccccccchHHHHHHHHHH
Q 006115 583 LCSLVQLQNYILSELKNAAERNKLRGFEHIKGVILDPRPFDMERDLVTATLKKKRNKLLIYYQVE 647 (660)
Q Consensus 583 ~~~~~~~~~~~~~~l~~~~~~~~l~~~~~p~~i~~~~~~~~~~~~P~t~~GKv~R~~l~~~~~~~ 647 (660)
+. +++.+++++..||.|++|+.++++ +.+|+|++||++|++|+++|.++
T Consensus 489 --~~--------~~l~~~~~~~~L~~~~~P~~i~~v------~~lP~t~~GKi~r~~L~~~~~~~ 537 (541)
T 1v25_A 489 --TP--------EELNEHLLKAGFAKWQLPDAYVFA------EEIPRTSAGKFLKRALREQYKNY 537 (541)
T ss_dssp ----------------------CCCTTTSCSBC--------------------CCTTHHHHSTTS
T ss_pred --CH--------HHHHHHHHhccCccccCCcEEEEe------CCCCCCCccCeeHHHHHHHHHHh
Confidence 11 223334432389999999999987 44699999999999999987654
No 6
>3r44_A Fatty acyl COA synthetase FADD13 (fatty-acyl-COA synthetase); ligase; HET: HIS; 1.80A {Mycobacterium tuberculosis} PDB: 3t5c_A 3t5b_A
Probab=100.00 E-value=6.1e-74 Score=628.69 Aligned_cols=498 Identities=23% Similarity=0.305 Sum_probs=405.6
Q ss_pred CCCCcHHHHHHHHHHhCCCCCceeeeccccCCCCCceEEeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEeCChhhHHHHH
Q 006115 39 SDLNTAWDIFSMSVQKYPGNRMLGWRPFVDGKFGPYVWKTYKEVYEEVLQIVSALRASGAEPGCRVGIYGANCPQWVEAM 118 (660)
Q Consensus 39 ~~~~ti~~~l~~~a~~~pd~~a~~~~~~~~~~~~~~~~~Ty~el~~~~~~lA~~L~~~gv~~gd~V~l~~~n~~~~~~~~ 118 (660)
+...|+.++|.++|+++||++|+++. +. .+++||+||.++++++|++|.+.|+++||+|+++++|++++++++
T Consensus 13 ~~~~~l~~~l~~~a~~~p~~~A~~~~---~~----~~~~Ty~eL~~~~~~lA~~L~~~Gv~~gd~V~i~~~~~~~~~~~~ 85 (517)
T 3r44_A 13 DKMKNIGWMLRQRATVSPRLQAYVEP---ST----DVRMTYAQMNALANRCADVLTALGIAKGDRVALLMPNSVEFCCLF 85 (517)
T ss_dssp GGGGCHHHHHHHHHHHSTTSEEEEEG---GG----TEEEEHHHHHHHHHHHHHHHHHTTCCTTCEEEEECCSSHHHHHHH
T ss_pred ccccCHHHHHHHHHHhCCCCeEEEeC---Cc----CceeeHHHHHHHHHHHHHHHHHcCCCCcCEEEEEcCCCHHHHHHH
Confidence 45689999999999999999999875 32 258999999999999999999999999999999999999999999
Q ss_pred HHHHhCCCeEeecCCCCChhhHHHHhhcccceEEEEccchhhhhhccccccccCccEEEEecCCcHHHHHHHhhCCceee
Q 006115 119 EACNALSLICVPLYDTLGPGAVNFILDHAEIDFVFVQDKKVKELLSPDCRSAQRLRVMVCFTSLTAEQKEMAVQTGIKPY 198 (660)
Q Consensus 119 lA~~~~G~~~v~i~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~ 198 (660)
|||+++|++++|++|.++.+++.++++.++++++|++......+..... .......++..... .
T Consensus 86 lA~~~~G~~~vpl~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~~-~~~~~~~~~~~~~~---------------~ 149 (517)
T 3r44_A 86 YGAAKLGAVAVPINTRLAAPEVSFILSDSGSKVVIYGAPSAPVIDAIRA-QADPPGTVTDWIGA---------------D 149 (517)
T ss_dssp HHHHHHTCEEEECCTTSCHHHHHHHHHHHTCSEEEECGGGHHHHHHHHH-SSSCCTTCCEEEEH---------------H
T ss_pred HHHHHhCcEEEecCcccCHHHHHHHHHhcCceEEEECCchHHHHHHHHh-ccCCccEEEEccCc---------------c
Confidence 9999999999999999999999999999999999999876654432211 11111111111100 1
Q ss_pred eHHHHHhcCccCCccCCCCCCCCeEEEEecCCCCCCCceeeeccHhHHHHhhhcccccccccCCCCCCcEEEEecChhhH
Q 006115 199 SWDEFLHLGKVNEMEILPPQPFNICTIMYTSGTSGDPKGVVLTHETIATFVSGVDLFLDQFEDKMTVDDVYLSFLPLAHI 278 (660)
Q Consensus 199 ~~~~~~~~~~~~~~~~~~~~~~~~a~i~~TSGTTG~pK~v~~th~~l~~~~~~~~~~~~~~~~~~~~~d~~l~~~p~~~~ 278 (660)
.+.+..... ....+.....++++++|+|||||||.||+|++||+++.+.+..+...+ ++..+|++++++|++|.
T Consensus 150 ~~~~~~~~~-~~~~~~~~~~~~d~a~i~~TSGTTG~PKgV~~sh~~l~~~~~~~~~~~-----~~~~~d~~l~~~p~~~~ 223 (517)
T 3r44_A 150 SLAERLRSA-AADEPAVECGGDDNLFIMYTSGTTGHPKGVVHTHESVHSAASSWASTI-----DVRYRDRLLLPLPMFHV 223 (517)
T ss_dssp HHHHHHHHC-CCCCCCCCCCTTSEEEEEEECC---CCEEEEEEHHHHHHHHHHHHHHS-----CCCTTCEEEECSCTTSH
T ss_pred cHHHHhhcc-CcCCCCCCCCCCCeEEEEECCcccccCceeeeeHHHHHHHHHHHHHhc-----CCCCCCEEEEeCchHHH
Confidence 223333322 122233456789999999999999999999999999999998877776 78999999999999999
Q ss_pred HHHHHHHHHhhcCcEEEEecC-ChHHHHHHhhhhcCeEEEechHHHHHHHHHHHHHHHhhchHHHHHHHHHHHHHHHHHh
Q 006115 279 LDRVIEEYFFRRGASVGYYHG-DLNALRDDLMELKPTLLAGVPRVFEKIHEGIKKALEELRPLRRRIFDALYKYKLAWMN 357 (660)
Q Consensus 279 ~g~~~~~~~l~~G~~~v~~~~-~~~~~~~~i~~~~~t~l~~~p~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 357 (660)
+++...+.++..|+++++.+. ++..+++.++++++|+++++|+++..|.+.....
T Consensus 224 ~~~~~~~~~~~~G~~~v~~~~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~------------------------ 279 (517)
T 3r44_A 224 AALTTVIFSAMRGVTLISMPQFDATKVWSLIVEERVCIGGAVPAILNFMRQVPEFA------------------------ 279 (517)
T ss_dssp HHHHHHHHHHHHTCEEEECSSCCHHHHHHHHHHTTCCEEEECHHHHHHHHHSHHHH------------------------
T ss_pred HHHHHHHHHHhcCeEEEEeCCCCHHHHHHHHHHhCCeEEEeHHHHHHHHHhCcccc------------------------
Confidence 999876666569999998876 9999999999999999999999999886532211
Q ss_pred cCCCCCCcchhHHHHHHHHHHHHhCCcEeEEEEccCCCCHHHHHHHHHhcCCceeeecCCCCCCCceecccCCC-ccccC
Q 006115 358 MGYKQREASPLADLLAFRKVKARLGGRLRLVISGGAPLSTEVEEFLRVTCCAFLVQGYGLTETCGPTTVCFPDE-MCMVG 436 (660)
Q Consensus 358 ~~~~~~~~~~~~~~~~~~~~~~~~~~slr~v~~~G~~l~~~~~~~~~~~~~~~v~~~YG~tE~~~~~~~~~~~~-~~~~~ 436 (660)
....++||.+++||+++++++.+.+.+. ++++++.||+||+++.++...... ....+
T Consensus 280 ---------------------~~~~~~lr~i~~gGe~l~~~~~~~~~~~-~~~~~~~YG~TE~~~~~~~~~~~~~~~~~~ 337 (517)
T 3r44_A 280 ---------------------ELDAPDFRYFITGGAPMPEALIKIYAAK-NIEVVQGYALTESCGGGTLLLSEDALRKAG 337 (517)
T ss_dssp ---------------------HCCCTTCCEEEECSSCCCHHHHHHHHHT-TCEEEEEEECGGGTTCEEEECGGGTTTTTT
T ss_pred ---------------------cCCCCcccEEEECCCCCCHHHHHHHHhc-CCcEEEeecccccccceeecCCccccccCC
Confidence 1122589999999999999999999887 999999999999998766554332 34458
Q ss_pred ccCCCccCeeEEeeecCCCCCCCCCCCCCceEEEccCCcccccCCCchhhhhcccCCccccCceEEECCCCcEEEEeccC
Q 006115 437 TAGPVSVYSELRLEEVPEMGYSPLDDPPCGEVCVRGKTLFSGYYKNPDLTRESIIDGWFHTGDIGQILPNGVVKIIDRKK 516 (660)
Q Consensus 437 ~~G~~~~~~~v~iv~~~~~~~~~~~~g~~GEi~v~g~~~~~gy~~~~~~~~~~f~~g~~~TGDl~~~~~~G~l~~~GR~~ 516 (660)
++|+|++++++++++ +++.. ++.| .|||+|+|++++.||+++++.+.+.|.+|||+|||+|++|+||+++++||.|
T Consensus 338 ~~G~~~~~~~~~i~d-~~~~~--~~~g-~GEl~v~g~~v~~GY~~~p~~t~~~f~~g~~~TGDl~~~~~dG~l~~~GR~d 413 (517)
T 3r44_A 338 SAGRATMFTDVAVRG-DDGVI--REHG-EGEVVIKSDILLKEYWNRPEATRDAFDNGWFRTGDIGEIDDEGYLYIKDRLK 413 (517)
T ss_dssp CCBEECTTEEEEEEC-TTSCE--ESSE-EEEEEEEETTSCSEETTCHHHHHHTEETTEEEEEEEEEECTTSCEEEEECGG
T ss_pred CCCcCCCCeEEEEEC-CCCCC--CCCC-CeEEEEeCcchhhhhCCChhhhHhhhcCCCEecceeEEEcCCeeEEEecCCc
Confidence 899999999999998 55543 3334 7999999999999999999999999999999999999999999999999999
Q ss_pred CeeEcCCCeeecchhHHHHHhcCcCcceEEEEecCCCC---eEEEEEEcChhhHHHHHHHCCCCCcHHHHhccHHHHHHH
Q 006115 517 NLIKISQGEYVALEYLENVYCVAPIIEDIWVYGDSLKS---MLVAVVVPCEEDTKKWAYSNGHAGSFLELCSLVQLQNYI 593 (660)
Q Consensus 517 d~i~~~~G~~v~~~~iE~~l~~~p~V~~~~v~~~~~~~---~~~a~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 593 (660)
|+||+ +|++|+|.+||++|.+||+|.+|+|++.+++. .++++|...... . +.
T Consensus 414 d~ik~-~G~~v~p~eIE~~l~~~p~V~~~~Vv~~~~~~~g~~~~a~v~~~~~~---------~--------~~------- 468 (517)
T 3r44_A 414 DMIIS-GGENVYPAEIESVIIGVPGVSEVAVIGLPDEKWGEIAAAIVVADQNE---------V--------SE------- 468 (517)
T ss_dssp GCEEE-TTEEECHHHHHHHHTTSTTEEEEEEEEEEETTTEEEEEEEEEECTTT---------C--------CH-------
T ss_pred CEEEE-CCEEECHHHHHHHHHhCCCEeEEEEEeccccccCceEEEEEECCCCC---------C--------CH-------
Confidence 99996 89999999999999999999999999876553 566666433221 0 11
Q ss_pred HHHHHHHHHHCCCCCceeeeEEEEecCCCCCCCCccccccccchHHHHHHHHHHH
Q 006115 594 LSELKNAAERNKLRGFEHIKGVILDPRPFDMERDLVTATLKKKRNKLLIYYQVEI 648 (660)
Q Consensus 594 ~~~l~~~~~~~~l~~~~~p~~i~~~~~~~~~~~~P~t~~GKv~R~~l~~~~~~~l 648 (660)
++|+++++ ..||.|++|+.|+++ +.+|+|++||++|++|+++|.+++
T Consensus 469 -~~l~~~l~-~~L~~~~~P~~i~~v------~~lP~t~~GKi~R~~L~~~~~~~~ 515 (517)
T 3r44_A 469 -QQIVEYCG-TRLARYKLPKKVIFA------EAIPRNPTGKILKTVLREQYSATV 515 (517)
T ss_dssp -HHHHHHHH-HHSCGGGSCSEEEEC------SCCCBCTTCCBCHHHHHHHHGGGC
T ss_pred -HHHHHHHH-HhCCCCCCCCEEEEE------CCCCCCCCcCccHHHHHHHHHhhc
Confidence 23334443 679999999999997 456999999999999999987654
No 7
>3rix_A Luciferase, luciferin 4-monooxygenase; oxidoreductase, photoprotein, luminescence, aspulvinone, natural product extracts; HET: 923; 1.70A {Photinus pyralis} SCOP: e.23.1.1 PDB: 1ba3_A 1lci_A* 4e5d_A* 3ies_A* 3iep_A* 3ier_A* 4g36_A* 4g37_A* 3qya_A
Probab=100.00 E-value=5e-74 Score=634.56 Aligned_cols=523 Identities=24% Similarity=0.266 Sum_probs=334.6
Q ss_pred CCCCCCCCCcHHHHHHHHHHhCCCCCceeeeccccCCCCCceEEeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEeCChhh
Q 006115 34 FPSVDSDLNTAWDIFSMSVQKYPGNRMLGWRPFVDGKFGPYVWKTYKEVYEEVLQIVSALRASGAEPGCRVGIYGANCPQ 113 (660)
Q Consensus 34 ~~~~~~~~~ti~~~l~~~a~~~pd~~a~~~~~~~~~~~~~~~~~Ty~el~~~~~~lA~~L~~~gv~~gd~V~l~~~n~~~ 113 (660)
.|..+....|+.++|.++++++||++|++... ++.+ .+++||+||.++++++|++|++.|+++||+|+++++|+++
T Consensus 12 ~~~~~~~~~tl~~~l~~~a~~~p~~~a~~a~~--~~~~--~~~~Ty~el~~~~~~lA~~L~~~Gv~~gd~V~i~~~n~~e 87 (550)
T 3rix_A 12 APFYPLEDGTAGEQLHKAMKRYALVPGTIAFT--DAHI--EVNITYAEYFEMSVRLAEAMKRYGLNTNHRIVVCSENSLQ 87 (550)
T ss_dssp CCSSCCCCSCHHHHHHHHHHHHHTSTTCEEEE--ETTT--CCEEEHHHHHHHHHHHHHHHHHHTCCTTCEEEEECSSCTT
T ss_pred CCCCCcccCCHHHHHHHHHHhCCCCceEEEee--ecCC--CcEeEHHHHHHHHHHHHHHHHHhCCCCCCEEEEEcCCccc
Confidence 34555566899999999999999999986220 2211 1689999999999999999999999999999999999999
Q ss_pred HHHHHHHHHhCCCeEeecCCCCChhhHHHHhhcccceEEEEccchhhhhhccccccccCccEEEEecCCcHHHHHHHhhC
Q 006115 114 WVEAMEACNALSLICVPLYDTLGPGAVNFILDHAEIDFVFVQDKKVKELLSPDCRSAQRLRVMVCFTSLTAEQKEMAVQT 193 (660)
Q Consensus 114 ~~~~~lA~~~~G~~~v~i~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~ 193 (660)
+++++|||+++|++++|++|.++.+++.++++.++++++|++......+.... ...+....++.++....
T Consensus 88 ~~~~~lA~~~~Gav~vpl~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~--------- 157 (550)
T 3rix_A 88 FFMPVLGALFIGVAVAPANDIYNERELLNSMNISQPTVVFVSKKGLQKILNVQ-KKLPIIQKIIIMDSKTD--------- 157 (550)
T ss_dssp THHHHHHHHHHTCEEEECCTTCCHHHHHHHHHHHCCSEEEECGGGHHHHHHHH-HHCTTCCEEEETTCSSC---------
T ss_pred HHHHHHHHHHcCCEEeecCCcCCHHHHHHHHHhcCCeEEEEcHHHHHHHHHHH-hhCCCcceEEEEcCCcc---------
Confidence 99999999999999999999999999999999999999999998776554332 23345566666554321
Q ss_pred CceeeeHHHHHhcCccC------CccCCCCCCCCeEEEEecCCCCCCCceeeeccHhHHHHhhhcccccccccCCCCCCc
Q 006115 194 GIKPYSWDEFLHLGKVN------EMEILPPQPFNICTIMYTSGTSGDPKGVVLTHETIATFVSGVDLFLDQFEDKMTVDD 267 (660)
Q Consensus 194 ~~~~~~~~~~~~~~~~~------~~~~~~~~~~~~a~i~~TSGTTG~pK~v~~th~~l~~~~~~~~~~~~~~~~~~~~~d 267 (660)
.....++.++....... ..+.....++++++|+|||||||.||+|+++|++++..+......+. ..++.+++
T Consensus 158 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~a~i~~TSGTTG~PKgV~~th~~~~~~~~~~~~~~~--~~~~~~~~ 235 (550)
T 3rix_A 158 YQGFQSMYTFVTSHLPPGFNEYDFVPESFDRDKTIALIMNSSGSTGLPKGVALPHRTACVRFSHARDPIF--GNQIIPDT 235 (550)
T ss_dssp BTTBCBHHHHHHHHCCTTCCTTTCCCCCCCTTTSEEEEEEC-----CCCEEEEEHHHHHHHHHHHTCTTT--SCCCCTTC
T ss_pred ccCcccHHHHhhccccccccccccCCCCCCCCCCEEEEEECCCcccCcchhhhhHHHHHHHHHHhhhhhc--cccCCCCc
Confidence 11233455555432211 11122234678999999999999999999999999988776654321 12678899
Q ss_pred EEEEecChhhHHHHHHHHHHhhcCcEEEEecC-ChHHHHHHhhhhcCeEEEechHHHHHHHHHHHHHHHhhchHHHHHHH
Q 006115 268 VYLSFLPLAHILDRVIEEYFFRRGASVGYYHG-DLNALRDDLMELKPTLLAGVPRVFEKIHEGIKKALEELRPLRRRIFD 346 (660)
Q Consensus 268 ~~l~~~p~~~~~g~~~~~~~l~~G~~~v~~~~-~~~~~~~~i~~~~~t~l~~~p~~~~~l~~~~~~~~~~~~~~~~~~~~ 346 (660)
++++++|++|.+|+...+.++..|+++++.+. ++..+++.++++++|+++++|+++..|++..
T Consensus 236 ~~l~~~p~~~~~g~~~~~~~l~~G~~~~~~~~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~---------------- 299 (550)
T 3rix_A 236 AILSVVPFHHGFGMFTTLGYLICGFRVVLMYRFEEELFLRSLQDYKIQSALLVPTLFSFFAKST---------------- 299 (550)
T ss_dssp EEEECSCTTSHHHHHHHHHHHHHTCEEEECSSCCHHHHHHHHHHTTCSEEEECHHHHHHHHHCC----------------
T ss_pred EEEEechHHHHHHHHHHHHHHHcCCEEEEeCCCCHHHHHHHHHHcCCeEEEeCcHHHHHHHhCc----------------
Confidence 99999999999999888888999999999876 9999999999999999999999999886521
Q ss_pred HHHHHHHHHHhcCCCCCCcchhHHHHHHHHHHHHhCCcEeEEEEccCCCCHHHHHHHHHhcCCc-eeeecCCCCCCCcee
Q 006115 347 ALYKYKLAWMNMGYKQREASPLADLLAFRKVKARLGGRLRLVISGGAPLSTEVEEFLRVTCCAF-LVQGYGLTETCGPTT 425 (660)
Q Consensus 347 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~slr~v~~~G~~l~~~~~~~~~~~~~~~-v~~~YG~tE~~~~~~ 425 (660)
..+..++ ++||.+++||+++++++.+.+.+.++.. +++.||+||+++.++
T Consensus 300 ---------------------~~~~~~l--------~~lr~i~~gG~~l~~~~~~~~~~~~~~~~v~~~YG~TE~~~~~~ 350 (550)
T 3rix_A 300 ---------------------LIDKYDL--------SNLHEIASGGAPLSKEVGEAVAKRFHLPGIRQGYGLTETTSAIL 350 (550)
T ss_dssp ---------------------GGGGSCC--------TTCCEEEECSSCCCHHHHHHHHHHTTCSCCEEEEECGGGSSEEE
T ss_pred ---------------------cccccCc--------ccccEEEEecCCCCHHHHHHHHHHcCCCccccccCcCcccccee
Confidence 1111112 4899999999999999999999999875 999999999998877
Q ss_pred cccCCCccccCccCCCccCeeEEeeecCCCCCCCCCCCCCceEEEccCCcccccCCCchhhhhcc-cCCccccCceEEEC
Q 006115 426 VCFPDEMCMVGTAGPVSVYSELRLEEVPEMGYSPLDDPPCGEVCVRGKTLFSGYYKNPDLTRESI-IDGWFHTGDIGQIL 504 (660)
Q Consensus 426 ~~~~~~~~~~~~~G~~~~~~~v~iv~~~~~~~~~~~~g~~GEi~v~g~~~~~gy~~~~~~~~~~f-~~g~~~TGDl~~~~ 504 (660)
....... ..+++|+|+++++++|+| ++++ .+++.|+.|||+|+|++++.||+++++.+.+.| .+|||+|||+|++|
T Consensus 351 ~~~~~~~-~~~~vG~~~~~~~~~i~d-~~~~-~~~~~g~~GEl~v~g~~v~~GY~~~~~~t~~~~~~~g~~~TGDl~~~~ 427 (550)
T 3rix_A 351 ITPEGDD-KPGAVGKVVPFFEAKVVD-LDTG-KTLGVNQRGELCVRGPMIMSGYVNNPEATNALIDKDGWLHSGDIAYWD 427 (550)
T ss_dssp ECCTTCC-CTTEEEEECTTCEEEEEC-TTTC-CBCCTTCCEEEEEESTTSCSEETTCHHHHHHHBCTTSCEEEEEEEEEC
T ss_pred cCCCCCC-CCCCcccccCCcEEEEEe-CCCC-cCCCCCCCeEEEEeCCCcchhhcCChhhhhhhcCCCCCeecCcEEEEe
Confidence 6655443 448899999999999999 4433 456678999999999999999999999999999 89999999999999
Q ss_pred CCCcEEEEeccCCeeEcCCCeeecchhHHHHHhcCcCcceEEEEecCCC---CeEEEEEEcChhhHHHHHHHCCCCCcHH
Q 006115 505 PNGVVKIIDRKKNLIKISQGEYVALEYLENVYCVAPIIEDIWVYGDSLK---SMLVAVVVPCEEDTKKWAYSNGHAGSFL 581 (660)
Q Consensus 505 ~~G~l~~~GR~~d~i~~~~G~~v~~~~iE~~l~~~p~V~~~~v~~~~~~---~~~~a~v~~~~~~~~~~~~~~~~~~~~~ 581 (660)
+||+++++||.||+||+ +|++|+|.+||++|.+||+|.+|+|++.+++ +.++++|++.++...
T Consensus 428 ~dG~l~~~GR~dd~ik~-~G~~v~p~eIE~~l~~~p~V~~a~vv~~~~~~~g~~~~a~vv~~~~~~~------------- 493 (550)
T 3rix_A 428 EDEHFFIVDRLKSLIKY-KGYQVAPAELESILLQHPNIFDAGVAGLPDDDAGELPAAVVVLEHGKTM------------- 493 (550)
T ss_dssp TTCCEEEC------------------------------------------------------------------------
T ss_pred CCceEEEEecchheeEE-CCEEECHHHHHHHHHhCCCcceEEEEEeecCCCCceEEEEEEecCCCCC-------------
Confidence 99999999999999997 8999999999999999999999999997755 367888887764310
Q ss_pred HHhccHHHHHHHHHHHHHHHHHCCCCCceeee-EEEEecCCCCCCCCccccccccchHHHHHHHHHHHHHHH
Q 006115 582 ELCSLVQLQNYILSELKNAAERNKLRGFEHIK-GVILDPRPFDMERDLVTATLKKKRNKLLIYYQVEIDQLY 652 (660)
Q Consensus 582 ~~~~~~~~~~~~~~~l~~~~~~~~l~~~~~p~-~i~~~~~~~~~~~~P~t~~GKv~R~~l~~~~~~~l~~~y 652 (660)
+ .++|.+++ +..|+.|+.|. .++++ +.+|+|++||++|++|++++.+....-+
T Consensus 494 ---~--------~~~l~~~~-~~~l~~~~~~~~~i~~v------~~lP~t~~GKi~r~~L~~~~~~~~~~~~ 547 (550)
T 3rix_A 494 ---T--------EKEIVDYV-ASQVTTAKKLRGGVVFV------DEVPKGLTGKLDARKIREILIKAKKGGK 547 (550)
T ss_dssp ------------------------------------------------------------------------
T ss_pred ---C--------HHHHHHHH-HHhcccccccCCceEEE------eecCCCCCcceeHHHHHHHHHhhccccc
Confidence 1 12233333 36787776554 57776 4569999999999999999987655433
No 8
>1t5h_X 4-chlorobenzoyl COA ligase; adenylate-forming coenzyme A ligase domain alternation confo change; 2.00A {Alcaligenes SP} SCOP: e.23.1.1 PDB: 1t5d_X 3cw9_A* 3cw8_X* 2qvz_X* 2qw0_X* 3dlp_X* 2qvx_X* 2qvy_X*
Probab=100.00 E-value=6.2e-73 Score=619.37 Aligned_cols=489 Identities=21% Similarity=0.249 Sum_probs=396.6
Q ss_pred CCcHHHHHHHHHHhCCCCCceeeeccccCCCCCceEEeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEeCChhhHHHHHHH
Q 006115 41 LNTAWDIFSMSVQKYPGNRMLGWRPFVDGKFGPYVWKTYKEVYEEVLQIVSALRASGAEPGCRVGIYGANCPQWVEAMEA 120 (660)
Q Consensus 41 ~~ti~~~l~~~a~~~pd~~a~~~~~~~~~~~~~~~~~Ty~el~~~~~~lA~~L~~~gv~~gd~V~l~~~n~~~~~~~~lA 120 (660)
++|+.++|.++|+++||++|+.+. +.. +++||+||.++++++|++|++.|+++||+|+++++|++++++++||
T Consensus 1 M~tl~~~l~~~a~~~p~~~a~~~~---~~~----~~~Ty~el~~~~~~~A~~L~~~Gv~~gd~V~i~~~~~~~~~~~~lA 73 (504)
T 1t5h_X 1 MQTVNEMLRRAATRAPDHCALAVP---ARG----LRLTHAELRARVEAVAARLHADGLRPQQRVAVVAPNSADVVIAILA 73 (504)
T ss_dssp CCCHHHHHHHHHHHCTTSEEEEET---TTT----EEEEHHHHHHHHHHHHHHHHHTTCCTTCEEEEECCSCHHHHHHHHH
T ss_pred CCcHHHHHHHHHHhCCCceEEEEc---CCC----ceeEHHHHHHHHHHHHHHHHHcCCCCCCEEEEEcCCCHHHHHHHHH
Confidence 478999999999999999999864 211 6899999999999999999999999999999999999999999999
Q ss_pred HHhCCCeEeecCCCCChhhHHHHhhcccceEEEE--ccchhhhhhccccccccCccEEEEecCCcHHHHHHHhhCCceee
Q 006115 121 CNALSLICVPLYDTLGPGAVNFILDHAEIDFVFV--QDKKVKELLSPDCRSAQRLRVMVCFTSLTAEQKEMAVQTGIKPY 198 (660)
Q Consensus 121 ~~~~G~~~v~i~~~~~~~~l~~~l~~~~~~~vi~--~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~ 198 (660)
|+++|++++|++|.++.+++.++++.++++++|+ +......+.... ...+ ++
T Consensus 74 ~~~~G~~~vpl~~~~~~~~l~~~l~~~~~~~~i~~~~~~~~~~~~~~~----~~~~-~~--------------------- 127 (504)
T 1t5h_X 74 LHRLGAVPALLNPRLKSAELAELIKRGEMTAAVIAVGRQVADAIFQSG----SGAR-II--------------------- 127 (504)
T ss_dssp HHHHTCEEEEECTTSCHHHHHHHHHHTTCSEEEECC--CHHHHHHHHC----CCCE-EE---------------------
T ss_pred HHHhCcEEEecCCccChHHHHHHHhhcCCcEEEEecchhhhhhhhhcc----ccce-eE---------------------
Confidence 9999999999999999999999999999999999 665443331111 1111 11
Q ss_pred eHHHHHhcCc----cCCccCCCCCCCCeEEEEecCCCCCCCceeeeccHhHHHHhhhcccccccccCCC--CCCcEEEEe
Q 006115 199 SWDEFLHLGK----VNEMEILPPQPFNICTIMYTSGTSGDPKGVVLTHETIATFVSGVDLFLDQFEDKM--TVDDVYLSF 272 (660)
Q Consensus 199 ~~~~~~~~~~----~~~~~~~~~~~~~~a~i~~TSGTTG~pK~v~~th~~l~~~~~~~~~~~~~~~~~~--~~~d~~l~~ 272 (660)
.+.++..... ..........++++++|+|||||||.||+|+++|+++.+.+..+...+ ++ ..++++++.
T Consensus 128 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~i~~TSGTTG~PKgV~~sh~~~~~~~~~~~~~~-----~~~~~~~~~~l~~ 202 (504)
T 1t5h_X 128 FLGDLVRDGEPYSYGPPIEDPQREPAQPAFIFYTSGTTGLPKAAIIPQRAAESRVLFMSTQV-----GLRHGRHNVVLGL 202 (504)
T ss_dssp EGGGTEETTEECCCSCCCCCCCCCTTSEEEEEECCC---CCCEEEEEGGGHHHHHHHHHHTT-----CCCSSTTCEEEEC
T ss_pred EecchhhcCcccccCCccCCCCCCCCCeEEEEeCCCCCCCCCEEEecHHHHHHHHHHHHHhh-----CCCCCCCceEEee
Confidence 1222221110 111112345689999999999999999999999999999887766555 56 789999999
Q ss_pred cChhhHHHHH-HHHHHhhcCcEEEEecC-ChHHHHHHhhhhcCeEEEechHHHHHHHHHHHHHHHhhchHHHHHHHHHHH
Q 006115 273 LPLAHILDRV-IEEYFFRRGASVGYYHG-DLNALRDDLMELKPTLLAGVPRVFEKIHEGIKKALEELRPLRRRIFDALYK 350 (660)
Q Consensus 273 ~p~~~~~g~~-~~~~~l~~G~~~v~~~~-~~~~~~~~i~~~~~t~l~~~p~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~ 350 (660)
+|++|.+|+. .++.++..|+++++.+. ++..+++.++++++|+++++|+++..|++......
T Consensus 203 ~p~~~~~g~~~~~~~~l~~G~~~v~~~~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~---------------- 266 (504)
T 1t5h_X 203 MPLYHVVGFFAVLVAALALDGTYVVVEEFRPVDALQLVQQEQVTSLFATPTHLDALAAAAAHAG---------------- 266 (504)
T ss_dssp SCTTSHHHHTTTHHHHHHTTCEEEECSSCCHHHHHHHHHHHTCCEEECCHHHHHHHHHHHCCTT----------------
T ss_pred cchhhcchHHHHHHHHHHcCceEEeCCCCCHHHHHHHHHHhCCeEEEeChHHHHHHHhhhcccc----------------
Confidence 9999999985 46778999999999876 89999999999999999999999999875321000
Q ss_pred HHHHHHhcCCCCCCcchhHHHHHHHHHHHHhCCcEeEEEEccCCCCHHHHHHHHHhcCCceeeecCCCCCCCceecccCC
Q 006115 351 YKLAWMNMGYKQREASPLADLLAFRKVKARLGGRLRLVISGGAPLSTEVEEFLRVTCCAFLVQGYGLTETCGPTTVCFPD 430 (660)
Q Consensus 351 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~slr~v~~~G~~l~~~~~~~~~~~~~~~v~~~YG~tE~~~~~~~~~~~ 430 (660)
... ..++||.+++||+++++++.+.+++.+++.+++.||+||++. +....
T Consensus 267 -------------------~~~--------~l~~lr~~~~gG~~l~~~~~~~~~~~~~~~~~~~YG~TE~~~-~~~~~-- 316 (504)
T 1t5h_X 267 -------------------SSL--------KLDSLRHVTFAGATMPDAVLETVHQHLPGEKVNIYGTTEAMN-SLYMR-- 316 (504)
T ss_dssp -------------------CCC--------CCTTCCEEEECCTTCCHHHHHHHHHHCCSEEEEEEEETTTEE-EEEEE--
T ss_pred -------------------ccc--------cCccccEEEEcCCcCCHHHHHHHHHhcCcceeeeeccccccc-ccccc--
Confidence 000 114899999999999999999999999999999999999933 22222
Q ss_pred CccccCccCCCccCeeEEeeecCCCCCCCCCCCCCceEEEc-cCCcccccCCCchhhhhcccCCccccCceEEECCCCcE
Q 006115 431 EMCMVGTAGPVSVYSELRLEEVPEMGYSPLDDPPCGEVCVR-GKTLFSGYYKNPDLTRESIIDGWFHTGDIGQILPNGVV 509 (660)
Q Consensus 431 ~~~~~~~~G~~~~~~~v~iv~~~~~~~~~~~~g~~GEi~v~-g~~~~~gy~~~~~~~~~~f~~g~~~TGDl~~~~~~G~l 509 (660)
....+++|.|.+++++++++.+.+...+++.|+.|||+|+ |+.++.||+++++.+.+.|.+|||+|||+|++|+||++
T Consensus 317 -~~~~~~~g~p~~~~~~~i~~~~~~~~~~~~~g~~GEl~v~gg~~~~~GY~~~~~~t~~~f~~g~~~TGDlg~~~~dG~l 395 (504)
T 1t5h_X 317 -QPKTGTEMAPGFFSEVRIVRIGGGVDEIVANGEEGELIVAASDSAFVGYLNQPQATAEKLQDGWYRTSDVAVWTPEGTV 395 (504)
T ss_dssp -SCSSSSEEBCCTTCCEEEECTTSCTTCBCCTTCCEEEEEECCTTSCCCBTTCHHHHHHHEETTEEEEEEEEEECTTSCE
T ss_pred -CCCCCccccCCCCCceeEEeccCCCCCcCCCCCcceEEEeCCceeeceecCCchhhhhhhcCCccccCcEEEECCCceE
Confidence 1234789999999999999933322356667899999999 99999999999999999999999999999999999999
Q ss_pred EEEeccCCeeEcCCCeeecchhHHHHHhcCcCcceEEEEecCCC---CeEEEEEEcChhhHHHHHHHCCCCCcHHHHhcc
Q 006115 510 KIIDRKKNLIKISQGEYVALEYLENVYCVAPIIEDIWVYGDSLK---SMLVAVVVPCEEDTKKWAYSNGHAGSFLELCSL 586 (660)
Q Consensus 510 ~~~GR~~d~i~~~~G~~v~~~~iE~~l~~~p~V~~~~v~~~~~~---~~~~a~v~~~~~~~~~~~~~~~~~~~~~~~~~~ 586 (660)
+++||.||+||+ +|++|+|.+||++|.+||+|.+|+|++.+++ +.++|+|+++++. .. +
T Consensus 396 ~~~GR~dd~ik~-~G~~v~p~eIE~~l~~~p~V~~a~Vv~~~~~~~g~~~~a~vv~~~~~--------~~--------~- 457 (504)
T 1t5h_X 396 RILGRVDDMIIS-GGENIHPSEIERVLGTAPGVTEVVVIGLADQRWGQSVTACVVPRLGE--------TL--------S- 457 (504)
T ss_dssp EEEEEGGGCEEE-TTEEECHHHHHHHHTTSTTEEEEEEEEEECSSSSEEEEEEEEECTTC--------CC--------C-
T ss_pred EEeCcccCEEEE-CCEEECHHHHHHHHHhCCCcceEEEEEeecCCCCcEEEEEEEecCCc--------Cc--------C-
Confidence 999999999996 8999999999999999999999999998765 3799999987642 00 1
Q ss_pred HHHHHHHHHHHHHHHHHCCCCCceeeeEEEEecCCCCCCCCccccccccchHHHHHHHH
Q 006115 587 VQLQNYILSELKNAAERNKLRGFEHIKGVILDPRPFDMERDLVTATLKKKRNKLLIYYQ 645 (660)
Q Consensus 587 ~~~~~~~~~~l~~~~~~~~l~~~~~p~~i~~~~~~~~~~~~P~t~~GKv~R~~l~~~~~ 645 (660)
.++|.+++++.+||.|++|+.+++++ .+|+|++||++|++|+++|+
T Consensus 458 -------~~~l~~~~~~~~L~~~~~P~~i~~v~------~lP~t~~GKi~r~~L~~~~~ 503 (504)
T 1t5h_X 458 -------ADALDTFCRSSELADFKRPKRYFILD------QLPKNALNKVLRRQLVQQVS 503 (504)
T ss_dssp -------HHHHHHHHHTSSCCGGGSCSEEEECS------CCCBCTTSCBCHHHHHHHHC
T ss_pred -------HHHHHHHHhhccCcccccceEEEEhh------hCCCCCCCCEeHHHHHHHhc
Confidence 12344555423899999999999984 46999999999999998874
No 9
>2d1s_A Luciferase, luciferin 4-monooxygenase; alpha/beta, beta barrel, alpha+beta, riken structural genomics/proteomics initiative, RSGI; HET: SLU; 1.30A {Luciola cruciata} PDB: 2d1q_A* 2d1r_A* 2d1t_A*
Probab=100.00 E-value=4.4e-73 Score=625.96 Aligned_cols=510 Identities=24% Similarity=0.278 Sum_probs=411.0
Q ss_pred CCcHHH-HHHHHHHhCCCCCceeeeccccCCCCCceEEeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEeCChhhHHHHHH
Q 006115 41 LNTAWD-IFSMSVQKYPGNRMLGWRPFVDGKFGPYVWKTYKEVYEEVLQIVSALRASGAEPGCRVGIYGANCPQWVEAME 119 (660)
Q Consensus 41 ~~ti~~-~l~~~a~~~pd~~a~~~~~~~~~~~~~~~~~Ty~el~~~~~~lA~~L~~~gv~~gd~V~l~~~n~~~~~~~~l 119 (660)
..++.+ +|.++++++ |++|+++. ++. +++||+||.++++++|++|++.|+++||+|+++++|++++++++|
T Consensus 24 ~~~l~~~~l~~~~~~~-~~~A~~~~---~~~----~~~Ty~el~~~~~~lA~~L~~~Gv~~gd~V~i~~~n~~e~~~~~l 95 (548)
T 2d1s_A 24 SAGTQLRKYMERYAKL-GAIAFTNA---VTG----VDYSYAEYLEKSCCLGKALQNYGLVVDGRIALCSENCEEFFIPVI 95 (548)
T ss_dssp CHHHHHHHHHHHHHHH-TCEEEEET---TTC----CEEEHHHHHHHHHHHHHHHHHHTCCTTCEEEEECSSCTTTHHHHH
T ss_pred cCcHHHHHHHhhhccc-CCceEEEc---CCC----CEeeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEeCCchhHHHHHH
Confidence 368999 898999989 99999863 211 589999999999999999999999999999999999999999999
Q ss_pred HHHhCCCeEeecCCCCChhhHHHHhhcccceEEEEccchhhhhhccccccccCccEEEEecCCcHHHHHHHhhCCceeee
Q 006115 120 ACNALSLICVPLYDTLGPGAVNFILDHAEIDFVFVQDKKVKELLSPDCRSAQRLRVMVCFTSLTAEQKEMAVQTGIKPYS 199 (660)
Q Consensus 120 A~~~~G~~~v~i~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~ 199 (660)
||+++|++++|++|.++.+++.++|+.++++++|++......+.... ...+....++.++.... ......
T Consensus 96 a~~~~Gav~vpl~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~---------~~~~~~ 165 (548)
T 2d1s_A 96 AGLFIGVGVAPTNEIYTLRELVHSLGISKPTIVFSSKKGLDKVITVQ-KTVTTIKTIVILDSKVD---------YRGYQC 165 (548)
T ss_dssp HHHHHTCEEEEECTTSCHHHHHHHHHHHCCSEEEECTTTHHHHHHHH-HHSTTCCEEEETTCSSC---------BTTBCB
T ss_pred HHHhhCCEEeccCCCCCHHHHHHHHHhcCCeEEEEcHHHHHHHHHHh-cCCCCCCEEEEeCCccc---------cccccc
Confidence 99999999999999999999999999999999999988765543321 11222334555443210 001234
Q ss_pred HHHHHhcCccCCccCCCC------CCCCeEEEEecCCCCCCCceeeeccHhHHHHhhhcccccccccCCCCCCcEEEEec
Q 006115 200 WDEFLHLGKVNEMEILPP------QPFNICTIMYTSGTSGDPKGVVLTHETIATFVSGVDLFLDQFEDKMTVDDVYLSFL 273 (660)
Q Consensus 200 ~~~~~~~~~~~~~~~~~~------~~~~~a~i~~TSGTTG~pK~v~~th~~l~~~~~~~~~~~~~~~~~~~~~d~~l~~~ 273 (660)
+.++.........+.... .++++++++|||||||.||+|++||+++.+.+......+. ..++.++|++++++
T Consensus 166 ~~~~~~~~~~~~~~~~~~~~~~~~~~~d~a~i~~TSGTTG~PKgv~~sh~~~~~~~~~~~~~~~--~~~~~~~d~~l~~~ 243 (548)
T 2d1s_A 166 LDTFIKRNTPPGFQASSFKTVEVDRKEQVALIMNSSGSTGLPKGVQLTHENIVTRFSHARDPIY--GNQVSPGTAVLTVV 243 (548)
T ss_dssp HHHHHHHTSCTTCCGGGCCCCCCCTTTCEEEEECCSSCSSSCCCEEEEHHHHHHHHHHHTCTTT--SCCCCTTCEEEECS
T ss_pred HHHHHhcCccccCCcccccccccCCCCCEEEEEeCCCCCCCCCEEEecHHHHHHHHHHhhchhh--ccCCCccceEEEec
Confidence 566554331110111111 2389999999999999999999999999988877655411 11678899999999
Q ss_pred ChhhHHHHHH-HHHHhhcCcEEEEecC-ChHHHHHHhhhhcCeEEEechHHHHHHHHHHHHHHHhhchHHHHHHHHHHHH
Q 006115 274 PLAHILDRVI-EEYFFRRGASVGYYHG-DLNALRDDLMELKPTLLAGVPRVFEKIHEGIKKALEELRPLRRRIFDALYKY 351 (660)
Q Consensus 274 p~~~~~g~~~-~~~~l~~G~~~v~~~~-~~~~~~~~i~~~~~t~l~~~p~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~ 351 (660)
|++|.+|+.. ++.++ .|+++++.+. ++..+++.++++++|+++++|+++..|.+..
T Consensus 244 p~~h~~g~~~~~~~~l-~G~~~v~~~~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~--------------------- 301 (548)
T 2d1s_A 244 PFHHGFGMFTTLGYLI-CGFRVVMLTKFDEETFLKTLQDYKCTSVILVPTLFAILNKSE--------------------- 301 (548)
T ss_dssp CTTSHHHHHHHHHHHH-TTCEEEECCCCCHHHHHHHHHHTTEEEEEECHHHHHHHHHCS---------------------
T ss_pred cHHHHHHHHHHHHHHh-cCcEEEEcCCCCHHHHHHHHHHcCCcEEEecHHHHHHHHhCc---------------------
Confidence 9999999876 45556 9999999876 9999999999999999999999999886421
Q ss_pred HHHHHhcCCCCCCcchhHHHHHHHHHHHHhCCcEeEEEEccCCCCHHHHHHHHHhc-CCceeeecCCCCCCCceecccCC
Q 006115 352 KLAWMNMGYKQREASPLADLLAFRKVKARLGGRLRLVISGGAPLSTEVEEFLRVTC-CAFLVQGYGLTETCGPTTVCFPD 430 (660)
Q Consensus 352 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~slr~v~~~G~~l~~~~~~~~~~~~-~~~v~~~YG~tE~~~~~~~~~~~ 430 (660)
..+..+ .++||.+++||+++++++.+.+++.+ ++++++.||+||++..++.....
T Consensus 302 ----------------~~~~~~--------l~~lr~i~~gG~~l~~~~~~~~~~~~~~~~i~~~YG~TE~~~~~~~~~~~ 357 (548)
T 2d1s_A 302 ----------------LLNKYD--------LSNLVEIASGGAPLSKEVGEAVARRFNLPGVRQGYGLTETTSAIIITPEG 357 (548)
T ss_dssp ----------------CGGGSC--------CTTCCEEEECSSCCCHHHHHHHHHHTTCSCCEEEEECGGGSSEEEECCTT
T ss_pred ----------------cccccc--------ccceeEEEEcCccCCHHHHHHHHHHcCCCceeeccccccccceeeecCcc
Confidence 011111 14899999999999999999999988 68899999999999877664433
Q ss_pred CccccCccCCCccCeeEEeeecCCCCCCCCCCCCCceEEEccCCcccccCCCchhhhhcc-cCCccccCceEEECCCCcE
Q 006115 431 EMCMVGTAGPVSVYSELRLEEVPEMGYSPLDDPPCGEVCVRGKTLFSGYYKNPDLTRESI-IDGWFHTGDIGQILPNGVV 509 (660)
Q Consensus 431 ~~~~~~~~G~~~~~~~v~iv~~~~~~~~~~~~g~~GEi~v~g~~~~~gy~~~~~~~~~~f-~~g~~~TGDl~~~~~~G~l 509 (660)
....+++|+|+++++++|+| ++++ .+++.|+.|||+|+|++++.||+++++.+.+.| .+|||+|||+|++|+||++
T Consensus 358 -~~~~~~~G~~~~~~~~~i~d-~~~~-~~~~~g~~GEl~v~g~~v~~GY~~~~~~t~~~f~~~g~~~TGDl~~~~~dG~l 434 (548)
T 2d1s_A 358 -DDKPGASGKVVPLFKAKVID-LDTK-KSLGPNRRGEVCVKGPMLMKGYVNNPEATKELIDEEGWLHTGDIGYYDEEKHF 434 (548)
T ss_dssp -CCCTTCCBEECTTCEEEEEC-TTTC-CBCCTTCCEEEEEESTTSCSEETTCHHHHHHHBCTTSCEEEEEEEEECTTCCE
T ss_pred -cCCCCCCCccCCCceEEEEe-CCcC-ccCCCCCCeEEEECCHHHhhhhcCChHHhhhcccCCcEEEccCEEEEcCCCeE
Confidence 23458899999999999998 4333 455678899999999999999999999999999 7999999999999999999
Q ss_pred EEEeccCCeeEcCCCeeecchhHHHHHhcCcCcceEEEEecCCC---CeEEEEEEcChhhHHHHHHHCCCCCcHHHHhcc
Q 006115 510 KIIDRKKNLIKISQGEYVALEYLENVYCVAPIIEDIWVYGDSLK---SMLVAVVVPCEEDTKKWAYSNGHAGSFLELCSL 586 (660)
Q Consensus 510 ~~~GR~~d~i~~~~G~~v~~~~iE~~l~~~p~V~~~~v~~~~~~---~~~~a~v~~~~~~~~~~~~~~~~~~~~~~~~~~ 586 (660)
+++||.||+||+ +|++|+|.+||++|.+||+|.+|+|++.+++ +.++|+|+++++. .. +
T Consensus 435 ~~~GR~~d~ik~-~G~~v~p~eIE~~l~~~p~V~~a~V~~~~~~~~g~~~~a~vv~~~~~--------~~--------~- 496 (548)
T 2d1s_A 435 FIVDRLKSLIKY-KGYQVPPAELESVLLQHPSIFDAGVAGVPDPVAGELPGAVVVLESGK--------NM--------T- 496 (548)
T ss_dssp EEEEEGGGCBCB-TTCCBCHHHHHHHHHTSTTEEEEEEEEEEETTTEEEEEEEEEECTTC--------CC--------C-
T ss_pred EEeccccceEEE-CCEEECHHHHHHHHHhCCCccEEEEEEEEcCCCCeeeEEEEEEcCCC--------CC--------C-
Confidence 999999999997 8999999999999999999999999997755 3788999887642 00 1
Q ss_pred HHHHHHHHHHHHHHHHHCCCCCceeee-EEEEecCCCCCCCCccccccccchHHHHHHHHHHHHHH
Q 006115 587 VQLQNYILSELKNAAERNKLRGFEHIK-GVILDPRPFDMERDLVTATLKKKRNKLLIYYQVEIDQL 651 (660)
Q Consensus 587 ~~~~~~~~~~l~~~~~~~~l~~~~~p~-~i~~~~~~~~~~~~P~t~~GKv~R~~l~~~~~~~l~~~ 651 (660)
.++|.++++ ..|+.|++|+ .|+++ +.+|+|++||++|++|+++|.+.|++|
T Consensus 497 -------~~~l~~~~~-~~l~~~~~p~~~i~~v------~~lP~t~~GKi~r~~L~~~~~~~i~~~ 548 (548)
T 2d1s_A 497 -------EKEVMDYVA-SQVSNAKRLRGGVRFV------DEVPKGLTGKIDGRAIREILKKPVAKM 548 (548)
T ss_dssp -------HHHHHHHHH-TTSCGGGSCTTCEEEC------SSCCBCTTSCBCHHHHHHHHHSCC---
T ss_pred -------HHHHHHHHH-HhccccccccccEEEc------cCCCCCCcchhHHHHHHHHHhhhhhcC
Confidence 123444443 7899999999 89887 456999999999999999999888765
No 10
>3o83_A Peptide arylation enzyme; ligase, adenylation of 2,3-dihydroxybenzoate and transfer to pantetheine cofactor of BASF; HET: IXN; 1.90A {Acinetobacter baumannii} SCOP: e.23.1.0 PDB: 3o82_A* 3o84_A* 3u16_A* 3u17_A*
Probab=100.00 E-value=8.6e-74 Score=631.49 Aligned_cols=500 Identities=15% Similarity=0.150 Sum_probs=334.3
Q ss_pred CCcHHHHHHHHHHhCCCCCceeeeccccCCCCCceEEeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEeCChhhHHHHHHH
Q 006115 41 LNTAWDIFSMSVQKYPGNRMLGWRPFVDGKFGPYVWKTYKEVYEEVLQIVSALRASGAEPGCRVGIYGANCPQWVEAMEA 120 (660)
Q Consensus 41 ~~ti~~~l~~~a~~~pd~~a~~~~~~~~~~~~~~~~~Ty~el~~~~~~lA~~L~~~gv~~gd~V~l~~~n~~~~~~~~lA 120 (660)
..|+.++|.++++++||++|+++. + +++||+||.++++++|++|++.|+++||+|+++++|++++++++||
T Consensus 29 ~~tl~~~l~~~a~~~p~~~Al~~~----~-----~~~Ty~eL~~~~~~lA~~L~~~Gv~~gd~V~i~~~n~~~~~~~~lA 99 (544)
T 3o83_A 29 DQPLTRILTVGVQSHPHSLAIICG----E-----RQLSYIELDRLSTNLATRLAEKGLGKGDTALVQLPNVAEFYIVFFA 99 (544)
T ss_dssp CCCTTHHHHHHHHHCTTSEEEEET----T-----EEEEHHHHHHHHHHHHHHHHHTTCCTTCEEEECCCSSHHHHHHHHH
T ss_pred CCCHHHHHHHHHHhCCCceEEEcC----C-----CceeHHHHHHHHHHHHHHHHHCCCCCCCEEEEECCCCHHHHHHHHH
Confidence 378999999999999999999864 2 6899999999999999999999999999999999999999999999
Q ss_pred HHhCCCeEeecCCCCChhhHHHHhhcccceEEEEccchhh----hhhccccccccCccEEEEecCCcHHHHHHHhhCCce
Q 006115 121 CNALSLICVPLYDTLGPGAVNFILDHAEIDFVFVQDKKVK----ELLSPDCRSAQRLRVMVCFTSLTAEQKEMAVQTGIK 196 (660)
Q Consensus 121 ~~~~G~~~v~i~~~~~~~~l~~~l~~~~~~~vi~~~~~~~----~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~ 196 (660)
|+++|++++|+++.++.+++.++++.++++++|++..... ...............++..+....
T Consensus 100 ~~~~Gav~vpl~~~~~~~~l~~~l~~~~~~~li~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------------ 167 (544)
T 3o83_A 100 LLKAGVVVLNALYSHRQYELNAFIKQIQPKLLIGSRQHEVFSNNQFIDSLHDVNLSPEIILMLNHQAT------------ 167 (544)
T ss_dssp HHHHTCEEEECCTTCCHHHHHHHHHHHCCSEEEEETTSGGGSSSHHHHHHHHTTCCCSEEEEETCCTT------------
T ss_pred HHHhCcEEecCCCCCCHHHHHHHHHhcCeeEEEEccccccccHHHHHHHHhhcccCcceEEEecCCcc------------
Confidence 9999999999999999999999999999999999876531 111111222234445555543211
Q ss_pred eeeHHHHHhcCccCCccCCCCCCCCeEEEEecCCCCCCCceeeeccHhHHHHhhhcccccccccCCCCCCcEEEEecChh
Q 006115 197 PYSWDEFLHLGKVNEMEILPPQPFNICTIMYTSGTSGDPKGVVLTHETIATFVSGVDLFLDQFEDKMTVDDVYLSFLPLA 276 (660)
Q Consensus 197 ~~~~~~~~~~~~~~~~~~~~~~~~~~a~i~~TSGTTG~pK~v~~th~~l~~~~~~~~~~~~~~~~~~~~~d~~l~~~p~~ 276 (660)
...+.++...............++++++|+|||||||.||+|+++|+++.+.+......+ ++.++|++++++|++
T Consensus 168 ~~~~~~~~~~~~~~~~~~~~~~~~d~a~i~~TSGTTG~PKgv~~sh~~~~~~~~~~~~~~-----~~~~~d~~l~~~p~~ 242 (544)
T 3o83_A 168 DFGLLDWIETPAETFVDFSSTPADEVAFFQLSGGSTGTPKLIPRTHNDYDYSVRASAEIC-----GLNSNTRLLCALPAP 242 (544)
T ss_dssp SEEHHHHHHSCCSSCCCCCCCCTTSEEEEEECCC--CCCCEEEEEHHHHHHHHHHHHHHT-----TCCTTCEEEECSCTT
T ss_pred ccchhhhhhcccccccccccCCccceEEEEECCCcccCCceEEechHHHHHHHHHHHHHh-----CCCCCCeEEEecCcc
Confidence 123444444332222233456789999999999999999999999999999998887777 889999999999999
Q ss_pred hHHHHHH--HHHHhhcCcEEEEecC-ChHHHHHHhhhhcCeEEEechHHHHHHHHHHHHHHHhhchHHHHHHHHHHHHHH
Q 006115 277 HILDRVI--EEYFFRRGASVGYYHG-DLNALRDDLMELKPTLLAGVPRVFEKIHEGIKKALEELRPLRRRIFDALYKYKL 353 (660)
Q Consensus 277 ~~~g~~~--~~~~l~~G~~~v~~~~-~~~~~~~~i~~~~~t~l~~~p~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~ 353 (660)
|.+++.. ++.++..|+++++.+. ++..+++.++++++|+++++|+++..+++......
T Consensus 243 h~~~~~~~~~~~~l~~G~~~v~~~~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~------------------- 303 (544)
T 3o83_A 243 HNFMLSSPGALGVLHAGGCVVMAPNPEPLNCFSIIQRHQVNMASLVPSAVIMWLEKAAQYK------------------- 303 (544)
T ss_dssp SHHHHHSSHHHHHHHTTCEEEECSSCCHHHHHHHHHHHTCCEEEECHHHHHHHHHHHTTTH-------------------
T ss_pred eEeecchHHHHHHHHcCCEEEECCCCCHHHHHHHHHHHCCCEEEechHHHHHHHhchhhcc-------------------
Confidence 9999875 6778999999999876 99999999999999999999999999876432111
Q ss_pred HHHhcCCCCCCcchhHHHHHHHHHHHHhCCcEeEEEEccCCCCHHHHHHHHHhcCCceeeecCCCCCCCceecccCCCcc
Q 006115 354 AWMNMGYKQREASPLADLLAFRKVKARLGGRLRLVISGGAPLSTEVEEFLRVTCCAFLVQGYGLTETCGPTTVCFPDEMC 433 (660)
Q Consensus 354 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~slr~v~~~G~~l~~~~~~~~~~~~~~~v~~~YG~tE~~~~~~~~~~~~~~ 433 (660)
.++ ++||.+++||+++++++.+.+.+.+++++++.||+||++..++........
T Consensus 304 ------------------~~~--------~~lr~i~~gG~~l~~~~~~~~~~~~~~~~~~~YG~TE~~~~~~~~~~~~~~ 357 (544)
T 3o83_A 304 ------------------DQI--------QSLKLLQVGGASFPESLARQVPEVLNCKLQQVFGMAEGLVNYTRLDDSDEQ 357 (544)
T ss_dssp ------------------HHH--------TTCCEEEEESSCCCHHHHTHHHHHHCSEEEEEEECTTSCEEECCTTSCHHH
T ss_pred ------------------ccC--------CcceEEEEcCCCCCHHHHHHHHHHhCCcEEeeeccccccceeecCCCchhh
Confidence 111 489999999999999999999999999999999999988655544333334
Q ss_pred ccCccCCCc-cCeeEEeeecCCCCCCCCCCCCCceEEEccCCcccccCCCchhhhhcc-cCCccccCceEEECCCCcEEE
Q 006115 434 MVGTAGPVS-VYSELRLEEVPEMGYSPLDDPPCGEVCVRGKTLFSGYYKNPDLTRESI-IDGWFHTGDIGQILPNGVVKI 511 (660)
Q Consensus 434 ~~~~~G~~~-~~~~v~iv~~~~~~~~~~~~g~~GEi~v~g~~~~~gy~~~~~~~~~~f-~~g~~~TGDl~~~~~~G~l~~ 511 (660)
...++|.|+ ++++++|+| +++. +++.|+.|||+|+|++++.||+++++.+.+.| .+|||+|||+|++|+||++++
T Consensus 358 ~~~~~G~p~~~~~~~~i~d-~~~~--~~~~g~~GEl~v~g~~v~~GY~~~~~~t~~~f~~~g~~~TGDlg~~~~dG~l~~ 434 (544)
T 3o83_A 358 IFTTQGRPISSDDEIKIVD-EQYR--EVPEGEIGMLATRGPYTFCGYYQSPEHNSQVFDEDNYYYSGDLVQRTPDGNLRV 434 (544)
T ss_dssp HHHCCCEESCTTCEEEEEC-TTSC--BCCTTCCEEEEEECTTSCSCCTTCHHHHHHHBCTTCCEEEEEEEEECTTSCEEE
T ss_pred ccCCCceecCCCcEEEEEC-CCCC--CCCCCCeeEEEEecCCcchhhcCChhhhhhhCCCCCCeEcCCEEEEcCCCCEEE
Confidence 447899996 899999999 5554 45667899999999999999999999999999 799999999999999999999
Q ss_pred EeccCCeeEcCCCeeecchhHHHHHhcCcCcceEEEEecCCC---CeEEEEEEcChhhHHHHHHHCCCCCcHHHHhccHH
Q 006115 512 IDRKKNLIKISQGEYVALEYLENVYCVAPIIEDIWVYGDSLK---SMLVAVVVPCEEDTKKWAYSNGHAGSFLELCSLVQ 588 (660)
Q Consensus 512 ~GR~~d~i~~~~G~~v~~~~iE~~l~~~p~V~~~~v~~~~~~---~~~~a~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 588 (660)
+||.||+||+ +|++|+|.+||++|.+||+|.+|+|++.+++ +.++|+|+..+... .
T Consensus 435 ~GR~dd~ik~-~G~~v~p~eIE~~l~~~p~V~~a~vv~~~~~~~g~~~~a~vv~~~~~~-----------------~--- 493 (544)
T 3o83_A 435 VGRIKDQINR-GGEKIASEEIEKLILLHPEVMHAALVAIVDEQFGEKSCAFIVSRNPEL-----------------K--- 493 (544)
T ss_dssp EEEEC---------------------------------------------------------------------------
T ss_pred EeecCCEEEe-CCEEECHHHHHHHHHhCCCccEEEEEeccCCCCCceEEEEEEeCCCCC-----------------C---
Confidence 9999999996 8999999999999999999999999997755 36788888765220 1
Q ss_pred HHHHHHHHHHHHHHHCCCCCceeeeEEEEecCCCCCCCCccccccccchHHHHHHHHH
Q 006115 589 LQNYILSELKNAAERNKLRGFEHIKGVILDPRPFDMERDLVTATLKKKRNKLLIYYQV 646 (660)
Q Consensus 589 ~~~~~~~~l~~~~~~~~l~~~~~p~~i~~~~~~~~~~~~P~t~~GKv~R~~l~~~~~~ 646 (660)
...+++++++..||.|++|+.++++ +.+|+|++||++|++|++++..
T Consensus 494 -----~~~l~~~~~~~~l~~~~~P~~i~~v------~~lP~t~~GKi~r~~L~~~~~~ 540 (544)
T 3o83_A 494 -----AVVLRRHLMELGIAQYKLPDQIKLI------ESLPLTAVGKVDKKQLRSILNT 540 (544)
T ss_dssp ----------------------------------------------------------
T ss_pred -----HHHHHHHHHhCCCCcccCCcEEEEe------ccCCCCCCCCCcHHHHHHHHhh
Confidence 1223334433379999999999987 4569999999999999998864
No 11
>4fuq_A Malonyl COA synthetase; ANL superfamily, methylma malonate, ligase; HET: MSE; 1.70A {Rhodopseudomonas palustris} PDB: 4fut_A* 4gxr_A* 4gxq_A*
Probab=100.00 E-value=2.2e-73 Score=622.12 Aligned_cols=491 Identities=23% Similarity=0.297 Sum_probs=399.8
Q ss_pred HHHHHHHHhCCCCCceeeeccccCCCCCceEEeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEeCChhhHHHHHHHHHhCC
Q 006115 46 DIFSMSVQKYPGNRMLGWRPFVDGKFGPYVWKTYKEVYEEVLQIVSALRASGAEPGCRVGIYGANCPQWVEAMEACNALS 125 (660)
Q Consensus 46 ~~l~~~a~~~pd~~a~~~~~~~~~~~~~~~~~Ty~el~~~~~~lA~~L~~~gv~~gd~V~l~~~n~~~~~~~~lA~~~~G 125 (660)
++|.++++++||++++.+. +..+ +++||+||.++++++|++|++.|+++||+|+++++|++++++++|||+++|
T Consensus 4 ~l~~~~a~~~p~~~a~~~~---~~~~---~~~Ty~eL~~~~~~lA~~L~~~Gv~~gd~V~i~~~~~~~~~~~~lA~~~~G 77 (503)
T 4fuq_A 4 NLFARLFDKLDDPHKLAIE---TAAG---DKISYAELVARAGRVANVLVARGLQVGDRVAAQTEKSVEALVLYLATVRAG 77 (503)
T ss_dssp CHHHHHHSCCSCTTSEEEE---ETTC---CEEEHHHHHHHHHHHHHHHHHTTCCTTCEEEEECCSCHHHHHHHHHHHHTT
T ss_pred hHHHHHHHhCCCCceEEEe---cCCC---cEEEHHHHHHHHHHHHHHHHHcCCCCCCEEEEECCCCHHHHHHHHHHHHcC
Confidence 5788999999999999864 2111 589999999999999999999999999999999999999999999999999
Q ss_pred CeEeecCCCCChhhHHHHhhcccceEEEEccchhhhhhccccccccCccEEEEecCCcHHHHHHHhhCCceeeeHHHHHh
Q 006115 126 LICVPLYDTLGPGAVNFILDHAEIDFVFVQDKKVKELLSPDCRSAQRLRVMVCFTSLTAEQKEMAVQTGIKPYSWDEFLH 205 (660)
Q Consensus 126 ~~~v~i~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 205 (660)
++++|++|.++.+++.++++.++++++|++......+...... .. ..+..+..... ..+.....
T Consensus 78 a~~vpl~~~~~~~~l~~il~~~~~~~vi~~~~~~~~~~~~~~~-~~--~~~~~~~~~~~-------------~~~~~~~~ 141 (503)
T 4fuq_A 78 GVYLPLNTAYTLHELDYFITDAEPKIVVCDPSKRDGIAAIAAK-VG--ATVETLGPDGR-------------GSLTDAAA 141 (503)
T ss_dssp CEEEECCTTCCHHHHHHHHHHHCCSEEEECGGGTTTTHHHHHH-HT--CEEEECCTTSC-------------SHHHHHHH
T ss_pred cEEEecCCCCCHHHHHHHHHhcCCcEEEECchhhHHHHHHHhh-cC--ceEEEecCCcc-------------cccchhhh
Confidence 9999999999999999999999999999998765443222111 11 12333322111 01111111
Q ss_pred cCccCCccCCCCCCCCeEEEEecCCCCCCCceeeeccHhHHHHhhhcccccccccCCCCCCcEEEEecChhhHHHHHH-H
Q 006115 206 LGKVNEMEILPPQPFNICTIMYTSGTSGDPKGVVLTHETIATFVSGVDLFLDQFEDKMTVDDVYLSFLPLAHILDRVI-E 284 (660)
Q Consensus 206 ~~~~~~~~~~~~~~~~~a~i~~TSGTTG~pK~v~~th~~l~~~~~~~~~~~~~~~~~~~~~d~~l~~~p~~~~~g~~~-~ 284 (660)
.. ..........++++++|+|||||||.||+|+++|+++.+.+..+...+ ++.++|++++.+|++|.+|+.. .
T Consensus 142 ~~-~~~~~~~~~~~~d~a~i~~TSGTTG~PKgV~~sh~~l~~~~~~~~~~~-----~~~~~d~~~~~~p~~~~~g~~~~~ 215 (503)
T 4fuq_A 142 GA-SEAFATIDRGADDLAAILYTSGTTGRSKGAMLSHDNLASNSLTLVDYW-----RFTPDDVLIHALPIYHTHGLFVAS 215 (503)
T ss_dssp TS-CSCCCCCCCCTTSEEEEEECC--CCSCCEEEEEHHHHHHHHHHHHHHT-----TCCTTCEEEECSCSSSHCCCCCCH
T ss_pred cC-CCCcCcCCCCCCCeEEEEECCCcccCCeEEEEeHHHHHHHHHHHHHHh-----CCCCCCEEEEeCChHHHHHHHHHH
Confidence 11 122233356789999999999999999999999999999998887777 7899999999999999998765 5
Q ss_pred HHHhhcCcEEEEecC-ChHHHHHHhhhhcCeEEEechHHHHHHHHHHHHHHHhhchHHHHHHHHHHHHHHHHHhcCCCCC
Q 006115 285 EYFFRRGASVGYYHG-DLNALRDDLMELKPTLLAGVPRVFEKIHEGIKKALEELRPLRRRIFDALYKYKLAWMNMGYKQR 363 (660)
Q Consensus 285 ~~~l~~G~~~v~~~~-~~~~~~~~i~~~~~t~l~~~p~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 363 (660)
+.+++.|+++++.+. ++..+++.++ ++|+++++|+++..+++...
T Consensus 216 ~~~l~~g~~~~~~~~~~~~~~~~~i~--~~t~~~~~P~~~~~l~~~~~-------------------------------- 261 (503)
T 4fuq_A 216 NVTLFARGSMIFLPKFDPDKILDLMA--RATVLMGVPTFYTRLLQSPR-------------------------------- 261 (503)
T ss_dssp HHHHHTTCEEEECSSCCHHHHHHHHT--TCCEEEECHHHHHHHHTCTT--------------------------------
T ss_pred HHHHHhCCEEEEcCCCCHHHHHHHHh--hcCEEEEHHHHHHHHHhCCC--------------------------------
Confidence 677899999998876 9999999998 89999999999998864210
Q ss_pred CcchhHHHHHHHHHHHHhCCcEeEEEEccCCCCHHHHHHHHHhcCCceeeecCCCCCCCceecccCCCccccCccCCCcc
Q 006115 364 EASPLADLLAFRKVKARLGGRLRLVISGGAPLSTEVEEFLRVTCCAFLVQGYGLTETCGPTTVCFPDEMCMVGTAGPVSV 443 (660)
Q Consensus 364 ~~~~~~~~~~~~~~~~~~~~slr~v~~~G~~l~~~~~~~~~~~~~~~v~~~YG~tE~~~~~~~~~~~~~~~~~~~G~~~~ 443 (660)
... ...+++|.+++||+++++++.+.+.+.+++++++.||+||++..++... ......+++|+|++
T Consensus 262 -----~~~--------~~~~~lr~~~~gg~~l~~~~~~~~~~~~~~~~~~~YG~TE~~~~~~~~~-~~~~~~~~~G~p~~ 327 (503)
T 4fuq_A 262 -----LTK--------ETTGHMRLFISGSAPLLADTHREWSAKTGHAVLERYGMTETNMNTSNPY-DGDRVPGAVGPALP 327 (503)
T ss_dssp -----CST--------TTTTTCCEEEECSSCCCHHHHHHHHHHHSCCEEECCEETTTEECBCCCS-SSCCCTTEEEEBCT
T ss_pred -----ccc--------cchhhcEEEEECCCCCCHHHHHHHHHHhCCCccceEcccccCcccccCC-CCCCcCCccccCCC
Confidence 000 0124899999999999999999999999999999999999987755333 23344588999999
Q ss_pred CeeEEeeecCCCCCCCCCCCCCceEEEccCCcccccCCCchhhhhcc-cCCccccCceEEECCCCcEEEEeccCCeeEcC
Q 006115 444 YSELRLEEVPEMGYSPLDDPPCGEVCVRGKTLFSGYYKNPDLTRESI-IDGWFHTGDIGQILPNGVVKIIDRKKNLIKIS 522 (660)
Q Consensus 444 ~~~v~iv~~~~~~~~~~~~g~~GEi~v~g~~~~~gy~~~~~~~~~~f-~~g~~~TGDl~~~~~~G~l~~~GR~~d~i~~~ 522 (660)
+++++|+| ++++ .+++.|+.|||+|+|++++.||+++++.+.+.| .+|||+|||+|++|+||.++++||.||+||+
T Consensus 328 ~~~~~i~d-~~~g-~~~~~g~~GEl~v~g~~v~~GY~~~~~~t~~~f~~~g~~~TGDl~~~~~dG~l~~~GR~dd~ik~- 404 (503)
T 4fuq_A 328 GVSARVTD-PETG-KELPRGDIGMIEVKGPNVFKGYWRMPEKTKSEFRDDGFFITGDLGKIDERGYVHILGRGKDLVIT- 404 (503)
T ss_dssp TCEEEEEC-TTTC-CBCCTTCCEEEEEESTTSCCCBTTCHHHHHHTBCTTSCEEEEEEEEECTTCEEEECCSSTTCEEE-
T ss_pred CeEEEEEE-CCCC-CCCcCCCceEEEEECCchhhhhcCChhhhHhhhCCCCCeEcceeEEEcCCCcEEEEecCCCEEEE-
Confidence 99999999 4443 456678999999999999999999999999999 5999999999999999999999999999997
Q ss_pred CCeeecchhHHHHHhcCcCcceEEEEecCCC---CeEEEEEEcChhhHHHHHHHCCCCCcHHHHhccHHHHHHHHHHHHH
Q 006115 523 QGEYVALEYLENVYCVAPIIEDIWVYGDSLK---SMLVAVVVPCEEDTKKWAYSNGHAGSFLELCSLVQLQNYILSELKN 599 (660)
Q Consensus 523 ~G~~v~~~~iE~~l~~~p~V~~~~v~~~~~~---~~~~a~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ 599 (660)
+|++|+|.+||++|.+||+|.+|+|++.+++ +.++|+|++.++. .. +. +++.+
T Consensus 405 ~G~~v~p~eIE~~l~~~p~V~~a~vv~~~~~~~~~~~~a~v~~~~~~--------~~--------~~--------~~l~~ 460 (503)
T 4fuq_A 405 GGFNVYPKEIESEIDAMPGVVESAVIGVPHADFGEGVTAVVVRDKGA--------TI--------DE--------AQVLH 460 (503)
T ss_dssp TTEEECHHHHHHHHHTSTTEEEEEEEEEEETTTEEEEEEEEEECTTC--------CC--------CH--------HHHHH
T ss_pred CCEEECHHHHHHHHHhCCCeeEEEEEEeEchhcCceeEEEEEeCCCC--------CC--------CH--------HHHHH
Confidence 7999999999999999999999999987654 3688999887643 00 11 23334
Q ss_pred HHHHCCCCCceeeeEEEEecCCCCCCCCccccccccchHHHHHHHHH
Q 006115 600 AAERNKLRGFEHIKGVILDPRPFDMERDLVTATLKKKRNKLLIYYQV 646 (660)
Q Consensus 600 ~~~~~~l~~~~~p~~i~~~~~~~~~~~~P~t~~GKv~R~~l~~~~~~ 646 (660)
++ +..||.|++|+.|++++ .+|+|++||++|++|+++|++
T Consensus 461 ~l-~~~L~~~~~P~~i~~v~------~lP~t~~GKi~R~~L~~~~~~ 500 (503)
T 4fuq_A 461 GL-DGQLAKFKMPKKVIFVD------DLPRNTMGKVQKNVLRETYKD 500 (503)
T ss_dssp HH-BTTBCGGGCCSEEEEES------CCCBCTTSCBCHHHHHHHTTT
T ss_pred HH-HhhcccCCCCCEEEEEC------CCCCCcccceeHHHHHHHHHH
Confidence 44 47899999999999984 469999999999999998854
No 12
>1pg4_A Acetyl-COA synthetase; AMP-forming, adenylate-forming, thioester-forming, ligase; HET: COA PRX; 1.75A {Salmonella enterica} SCOP: e.23.1.1 PDB: 1pg3_A* 2p2f_A* 2p2b_A* 2p2q_A* 2p2j_A* 2p20_A* 2p2m_A*
Probab=100.00 E-value=1e-72 Score=634.66 Aligned_cols=522 Identities=16% Similarity=0.190 Sum_probs=418.4
Q ss_pred CCCcHHHHHHHHHHhCCCCCceeeeccccCCCCCceEEeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEeCChhhHHHHHH
Q 006115 40 DLNTAWDIFSMSVQKYPGNRMLGWRPFVDGKFGPYVWKTYKEVYEEVLQIVSALRASGAEPGCRVGIYGANCPQWVEAME 119 (660)
Q Consensus 40 ~~~ti~~~l~~~a~~~pd~~a~~~~~~~~~~~~~~~~~Ty~el~~~~~~lA~~L~~~gv~~gd~V~l~~~n~~~~~~~~l 119 (660)
..+++.++|+++++++||++|+++. +...+..+++||+||.++++++|++|++.|+++||+|+++++|++++++++|
T Consensus 74 ~~n~~~~~l~~~a~~~pd~~Al~~~---~~~~~~~~~lTY~eL~~~v~~lA~~L~~~Gv~~Gd~V~i~~~~~~e~vva~l 150 (652)
T 1pg4_A 74 TLNLAANCLDRHLQENGDRTAIIWE---GDDTSQSKHISYRELHRDVCRFANTLLDLGIKKGDVVAIYMPMVPEAAVAML 150 (652)
T ss_dssp EECHHHHHTGGGHHHHTTSEEEEEE---CSSTTCEEEEEHHHHHHHHHHHHHHHHHHTCCTTCEEEEECCSSHHHHHHHH
T ss_pred ChhHHHHHHHHHhccCCCceEEEEE---cCCCCceeEEeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEeCCCHHHHHHHH
Confidence 3578999999999999999999985 4334455899999999999999999999999999999999999999999999
Q ss_pred HHHhCCCeEeecCCCCChhhHHHHhhcccceEEEEccchhhh---------hhccccccc--cCccEEEEecCCcHHHHH
Q 006115 120 ACNALSLICVPLYDTLGPGAVNFILDHAEIDFVFVQDKKVKE---------LLSPDCRSA--QRLRVMVCFTSLTAEQKE 188 (660)
Q Consensus 120 A~~~~G~~~v~i~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~---------~~~~~~~~~--~~~~~i~~~~~~~~~~~~ 188 (660)
||+++|++++|+++.++.+++.++|++++++++|+++..... +..... .. ..+..++.++......
T Consensus 151 A~~~~Gav~vpl~~~~~~~~l~~~l~~~~~~~li~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~vi~~~~~~~~~-- 227 (652)
T 1pg4_A 151 ACARIGAVHSVIFGGFSPEAVAGCIIDSSSRLVITADEGVRAGRSIPLKKNVDDALK-NPNVTSVEHVIVLKRTGSDI-- 227 (652)
T ss_dssp HHHHHTCEEEECCTTSCHHHHHHHHHHHTCSEEEEESEEEETTEEEESHHHHHHHHT-STTCCSCCEEEEECSSCCCC--
T ss_pred HHHHcCcEEEecCCCCCHHHHHHHHHhcCCCEEEEcCccccCCcccchHHHHHHHHh-cCCcCCCCEEEEEeCCCCcc--
Confidence 999999999999999999999999999999999998764321 111111 11 1344566554321000
Q ss_pred HHhhCCceeeeHHHHHhcCccCCccCCCCCCCCeEEEEecCCCCCCCceeeeccHhHHHHhhh-cccccccccCCCCCCc
Q 006115 189 MAVQTGIKPYSWDEFLHLGKVNEMEILPPQPFNICTIMYTSGTSGDPKGVVLTHETIATFVSG-VDLFLDQFEDKMTVDD 267 (660)
Q Consensus 189 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~i~~TSGTTG~pK~v~~th~~l~~~~~~-~~~~~~~~~~~~~~~d 267 (660)
.........|.++..... .........++++++|+|||||||.||||+++|++++..+.. +...+ ++.++|
T Consensus 228 --~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~d~a~ilyTSGTTG~PKgV~~sh~~~~~~~~~~~~~~~-----~~~~~d 299 (652)
T 1pg4_A 228 --DWQEGRDLWWRDLIEKAS-PEHQPEAMNAEDPLFILYTSGSTGKPKGVLHTTGGYLVYAATTFKYVF-----DYHPGD 299 (652)
T ss_dssp --CCCBTTEEEHHHHHTTSC-SCCCCCCEETTSEEEEEEECCSSSSCEEEEEESHHHHHHHHHHHHHHT-----TCCTTC
T ss_pred --cccCCCceeHHHHHhhcC-CCCCccccCCCCCEEEEeccCCCCCCceEEECchHHHHHHHHHHHHhc-----CCCCCC
Confidence 000012346777765432 122333456899999999999999999999999998876643 33344 788999
Q ss_pred EEEEecChhhHHHHH-HHHHHhhcCcEEEEecC-----ChHHHHHHhhhhcCeEEEechHHHHHHHHHHHHHHHhhchHH
Q 006115 268 VYLSFLPLAHILDRV-IEEYFFRRGASVGYYHG-----DLNALRDDLMELKPTLLAGVPRVFEKIHEGIKKALEELRPLR 341 (660)
Q Consensus 268 ~~l~~~p~~~~~g~~-~~~~~l~~G~~~v~~~~-----~~~~~~~~i~~~~~t~l~~~p~~~~~l~~~~~~~~~~~~~~~ 341 (660)
++++..|++|.+|+. .++.++..|+++++++. ++..+++.++++++|+++++|++++.|.+...+
T Consensus 300 ~~l~~~~~~~~~g~~~~~~~~L~~G~t~vl~~~~~~~~~~~~~~~~i~~~~vt~~~~~P~~~~~l~~~~~~--------- 370 (652)
T 1pg4_A 300 IYWCTADVGWVTGHSYLLYGPLACGATTLMFEGVPNWPTPARMCQVVDKHQVNILYTAPTAIRALMAEGDK--------- 370 (652)
T ss_dssp EEEECSCTTSHHHHHHTTHHHHHTTCEEEEECSCTTSSSTTHHHHHHHHHTCSEEEECHHHHHHHHTTGGG---------
T ss_pred EEEEccCCeeeechHHHHHHHHHcCceEEEECCCCCCCCHHHHHHHHHHhCCeEEEeCHHHHHHHHhcCcc---------
Confidence 999999999999985 47788999999999863 789999999999999999999999988642110
Q ss_pred HHHHHHHHHHHHHHHhcCCCCCCcchhHHHHHHHHHHHHhCCcEeEEEEccCCCCHHHHHHHHHhcC---CceeeecCCC
Q 006115 342 RRIFDALYKYKLAWMNMGYKQREASPLADLLAFRKVKARLGGRLRLVISGGAPLSTEVEEFLRVTCC---AFLVQGYGLT 418 (660)
Q Consensus 342 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~slr~v~~~G~~l~~~~~~~~~~~~~---~~v~~~YG~t 418 (660)
..... .+++||.+++||+++++++.+++.+.+| +++++.||+|
T Consensus 371 --------------------------~~~~~--------~l~sLr~i~~gGe~l~~~~~~~~~~~~g~~~~~i~~~YG~T 416 (652)
T 1pg4_A 371 --------------------------AIEGT--------DRSSLRILGSVGEPINPEAWEWYWKKIGKEKCPVVDTWWQT 416 (652)
T ss_dssp --------------------------GTTTC--------CCTTCCEEEEESSCCCHHHHHHHHHHTTTTCSCEEEEBCCG
T ss_pred --------------------------ccccC--------CcCceEEEEEecCCCCHHHHHHHHHHhCCCCCcEEccccCc
Confidence 00011 1259999999999999999999999887 8999999999
Q ss_pred CCCCceecccCCC-ccccCccCCCccCeeEEeeecCCCCCCCCCCCCCceEEEcc--CCcccccCCCchhhhhcc---cC
Q 006115 419 ETCGPTTVCFPDE-MCMVGTAGPVSVYSELRLEEVPEMGYSPLDDPPCGEVCVRG--KTLFSGYYKNPDLTRESI---ID 492 (660)
Q Consensus 419 E~~~~~~~~~~~~-~~~~~~~G~~~~~~~v~iv~~~~~~~~~~~~g~~GEi~v~g--~~~~~gy~~~~~~~~~~f---~~ 492 (660)
|+++.++....+. ....+++|+|++|++++|+| +++. +++.|+.|||+|+| |+++.|||++++.+...| .+
T Consensus 417 E~~~~~~~~~~~~~~~~~~s~G~p~~g~~v~i~d-~~g~--~v~~g~~GEl~i~g~~p~~~~gY~~~~e~~~~~~~~~~~ 493 (652)
T 1pg4_A 417 ETGGFMITPLPGAIELKAGSATRPFFGVQPALVD-NEGH--PQEGATEGNLVITDSWPGQARTLFGDHERFEQTYFSTFK 493 (652)
T ss_dssp GGSSCSBCCCTTTCCBCTTCCBSBCTTCCEEEEC-TTCC--BCCSSEEEEEEECSCCTTCCCEETTCHHHHHHHHHSSST
T ss_pred ccccceecCCCCCcCccCCccccCcCCCeEEEEC-CCCC--CcCCCceEEEEEccCCCchhhhhcCCHHHHHhhhhhcCC
Confidence 9998766554332 34458999999999999999 6654 44556899999999 789999999999888776 38
Q ss_pred CccccCceEEECCCCcEEEEeccCCeeEcCCCeeecchhHHHHHhcCcCcceEEEEecCCC---CeEEEEEEcChhhHHH
Q 006115 493 GWFHTGDIGQILPNGVVKIIDRKKNLIKISQGEYVALEYLENVYCVAPIIEDIWVYGDSLK---SMLVAVVVPCEEDTKK 569 (660)
Q Consensus 493 g~~~TGDl~~~~~~G~l~~~GR~~d~i~~~~G~~v~~~~iE~~l~~~p~V~~~~v~~~~~~---~~~~a~v~~~~~~~~~ 569 (660)
|||+|||+|++|+||+|+++||.||+||+ +|++|+|.+||++|.+||.|.+|+|++.+++ +.++|+|+++++..
T Consensus 494 g~y~TGDlg~~d~dG~l~i~GR~dd~Ik~-~G~rI~~~eIE~~l~~~p~V~ea~Vvg~~~~~~g~~l~a~Vv~~~~~~-- 570 (652)
T 1pg4_A 494 NMYFSGDGARRDEDGYYWITGRVDDVLNV-SGHRLGTAEIESALVAHPKIAEAAVVGIPHAIKGQAIYAYVTLNHGEE-- 570 (652)
T ss_dssp TSEEEEEEEEECTTSCEEEEEESSSEEEE-TTEEEEHHHHHHHHHHSTTEEEEEEEEEEETTTEEEEEEEEEECTTCC--
T ss_pred CEEECCcEEEEcCCCcEEEEecCCCEEEE-CCEEECHHHHHHHHHhCCCcceEEEEEEEcCCCCeEEEEEEEECCCCC--
Confidence 99999999999999999999999999997 7999999999999999999999999997654 37999999886530
Q ss_pred HHHHCCCCCcHHHHhccHHHHHHHHHHHHHHHHHCCCCCceeeeEEEEecCCCCCCCCccccccccchHHHHHHHHHHHH
Q 006115 570 WAYSNGHAGSFLELCSLVQLQNYILSELKNAAERNKLRGFEHIKGVILDPRPFDMERDLVTATLKKKRNKLLIYYQVEID 649 (660)
Q Consensus 570 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~l~~~~~p~~i~~~~~~~~~~~~P~t~~GKv~R~~l~~~~~~~l~ 649 (660)
..+++ .++|+++++ ..||.|++|+.|+++ +.+|+|++||++|++|++.+.++++
T Consensus 571 ---------------~~~~~----~~~l~~~l~-~~l~~~~~P~~i~~v------~~lP~T~sGKi~R~~L~~~~~~~~~ 624 (652)
T 1pg4_A 571 ---------------PSPEL----YAEVRNWVR-KEIGPLATPDVLHWT------DSLPKTRSGKIMRRILRKIAAGDTS 624 (652)
T ss_dssp ---------------CCHHH----HHHHHHHHH-HHTCGGGCCSEEEEC------SCCCBCTTSCBCHHHHHHHHHTC--
T ss_pred ---------------CCHHH----HHHHHHHHH-HhCCCCcCCeEEEEc------CCCCCCCCccchHHHHHHHHhCCCC
Confidence 11222 344555554 679999999999997 4469999999999999999987654
Q ss_pred H
Q 006115 650 Q 650 (660)
Q Consensus 650 ~ 650 (660)
.
T Consensus 625 ~ 625 (652)
T 1pg4_A 625 N 625 (652)
T ss_dssp -
T ss_pred C
Confidence 3
No 13
>3c5e_A Acyl-coenzyme A synthetase ACSM2A, mitochondrial; middle-chain acyl-COA synthetase, xenobiotic/medium-chain FA COA ligase; HET: ATP; 1.60A {Homo sapiens} PDB: 2vze_A 3b7w_A* 3day_A* 3eq6_A* 3eyn_A* 3gpc_A* 2wd9_A*
Probab=100.00 E-value=4e-72 Score=620.46 Aligned_cols=522 Identities=19% Similarity=0.196 Sum_probs=418.6
Q ss_pred eeccccCCCCCCCCCCCCcHHHHHHHHHHh-----CCCCCceeeeccccCCCCCceEEeHHHHHHHHHHHHHHHHHc-CC
Q 006115 25 YRNLLASNGFPSVDSDLNTAWDIFSMSVQK-----YPGNRMLGWRPFVDGKFGPYVWKTYKEVYEEVLQIVSALRAS-GA 98 (660)
Q Consensus 25 ~r~~~~~~~~~~~~~~~~ti~~~l~~~a~~-----~pd~~a~~~~~~~~~~~~~~~~~Ty~el~~~~~~lA~~L~~~-gv 98 (660)
+++....++.-..+...+++.++|++++++ +||++|+++. ++ .+..+++||+||.++++++|++|.+. |+
T Consensus 21 ~~~~~~~~~~~~~~~~~~~~~~~l~~~a~~~~a~~~p~~~al~~~---~~-~g~~~~~Ty~el~~~~~~lA~~L~~~~Gv 96 (570)
T 3c5e_A 21 FQSMSLQWGHQEVPAKFNFASDVLDHWADMEKAGKRPPSPALWWV---NG-KGKELMWNFRELSENSQQAANVLSGACGL 96 (570)
T ss_dssp ------CCCBCCCCSBCCHHHHTHHHHHHHHHTTSSCCCEEEEEE---CS-SSCEEEEEHHHHHHHHHHHHHHHHTTTCC
T ss_pred eeecccccccccCCccccHHHHHHHHHHhhccccCCCCceEEEEE---cC-CCceeEEeHHHHHHHHHHHHHHHHHccCC
Confidence 344433343333455677889999999998 9999999975 42 22347899999999999999999998 99
Q ss_pred CCCCEEEEEeCChhhHHHHHHHHHhCCCeEeecCCCCChhhHHHHhhcccceEEEEccchhhhhhccccccccCccEEEE
Q 006115 99 EPGCRVGIYGANCPQWVEAMEACNALSLICVPLYDTLGPGAVNFILDHAEIDFVFVQDKKVKELLSPDCRSAQRLRVMVC 178 (660)
Q Consensus 99 ~~gd~V~l~~~n~~~~~~~~lA~~~~G~~~v~i~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~~~~~~~~~~i~~ 178 (660)
++||+|+++++|++++++++|||+++|++++|++|.++.+++.++|+.++++++|+++.....+.... ...+.++.++.
T Consensus 97 ~~gd~V~i~~~n~~e~~~~~lA~~~~Ga~~vpl~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~-~~~~~~~~~~~ 175 (570)
T 3c5e_A 97 QRGDRVAVVLPRVPEWWLVILGCIRAGLIFMPGTIQMKSTDILYRLQMSKAKAIVAGDEVIQEVDTVA-SECPSLRIKLL 175 (570)
T ss_dssp CTTCEEEEECCSCHHHHHHHHHHHHHTCEEEECCTTCCHHHHHHHHHHHTCSEEEEETTTHHHHHHHG-GGCTTCCEEEE
T ss_pred CCCCEEEEEcCCCHHHHHHHHHHHHcCeEEEecCCCCCHHHHHHHHHhcCCeEEEechHHHHHHHHHh-hcCCceeEEEE
Confidence 99999999999999999999999999999999999999999999999999999999987765543322 22344555555
Q ss_pred ecCCcHHHHHHHhhCCceeeeHHHHHhcCccCCccCCCCCCCCeEEEEecCCCCCCCceeeeccHhHHH--Hhhhccccc
Q 006115 179 FTSLTAEQKEMAVQTGIKPYSWDEFLHLGKVNEMEILPPQPFNICTIMYTSGTSGDPKGVVLTHETIAT--FVSGVDLFL 256 (660)
Q Consensus 179 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~i~~TSGTTG~pK~v~~th~~l~~--~~~~~~~~~ 256 (660)
++.... .....+.++...... ........++++++|+|||||||.||+|+++|+ ++. ..... ..+
T Consensus 176 ~~~~~~----------~~~~~~~~~~~~~~~-~~~~~~~~~~d~a~i~~TSGTTG~PKgV~~sh~-~~~~~~~~~~-~~~ 242 (570)
T 3c5e_A 176 VSEKSC----------DGWLNFKKLLNEAST-THHCVETGSQEASAIYFTSGTSGLPKMAEHSYS-SLGLKAKMDA-GWT 242 (570)
T ss_dssp ESSSCC----------TTSEEHHHHHHHSCS-CCCCCCCBTTSEEEEEECCCSSSSCCEEEEEHH-HHHHHHHHHT-TTT
T ss_pred ecccCc----------cccccHHHHhhcccc-cccccCCCCCCcEEEEECCCCCCCCCEEEechH-HHHhhhhhhh-hhc
Confidence 553210 113356666544322 122234568999999999999999999999999 444 33333 334
Q ss_pred ccccCCCCCCcEEEEecChhhHHHHHH-HHHHhhcCcEEEEec---CChHHHHHHhhhhcCeEEEechHHHHHHHHHHHH
Q 006115 257 DQFEDKMTVDDVYLSFLPLAHILDRVI-EEYFFRRGASVGYYH---GDLNALRDDLMELKPTLLAGVPRVFEKIHEGIKK 332 (660)
Q Consensus 257 ~~~~~~~~~~d~~l~~~p~~~~~g~~~-~~~~l~~G~~~v~~~---~~~~~~~~~i~~~~~t~l~~~p~~~~~l~~~~~~ 332 (660)
++..+|++++.+|++|.+++.. ++.++..|+++++.+ .++..+++.++++++|+++++|+++..|.+..
T Consensus 243 -----~~~~~d~~~~~~p~~~~~~~~~~~~~~l~~G~~~~~~~~~~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~-- 315 (570)
T 3c5e_A 243 -----GLQASDIMWTISDTGWILNILCSLMEPWALGACTFVHLLPKFDPLVILKTLSSYPIKSMMGAPIVYRMLLQQD-- 315 (570)
T ss_dssp -----SCCTTCEEEECCCTTSHHHHHHTTHHHHHHTCEEEEECCSSCCHHHHHHHHHHSCCCEEEECHHHHHHHHTSC--
T ss_pred -----CCCCCceEEEcCchHHHHHHHHHHHHHHHhCceEEEecCCCCCHHHHHHHHHHhCCeEEeccHHHHHHHHhcc--
Confidence 7889999999999999999874 677899999999986 28999999999999999999999999886420
Q ss_pred HHHhhchHHHHHHHHHHHHHHHHHhcCCCCCCcchhHHHHHHHHHHHHhCCcEeEEEEccCCCCHHHHHHHHHhcCCcee
Q 006115 333 ALEELRPLRRRIFDALYKYKLAWMNMGYKQREASPLADLLAFRKVKARLGGRLRLVISGGAPLSTEVEEFLRVTCCAFLV 412 (660)
Q Consensus 333 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~slr~v~~~G~~l~~~~~~~~~~~~~~~v~ 412 (660)
... ...++||.+++||+++++++.+.+.+.+|++++
T Consensus 316 ------------------------------------~~~--------~~~~~lr~i~~gGe~l~~~~~~~~~~~~g~~i~ 351 (570)
T 3c5e_A 316 ------------------------------------LSS--------YKFPHLQNCVTVGESLLPETLENWRAQTGLDIR 351 (570)
T ss_dssp ------------------------------------TTT--------CCCTTCCEEEEESSCCCHHHHHHHHHHHSCCCE
T ss_pred ------------------------------------ccc--------cccccceEEEEcCCcCCHHHHHHHHHHhCCchh
Confidence 000 012489999999999999999999998899999
Q ss_pred eecCCCCCCCceecccCCCccccCccCCCccCeeEEeeecCCCCCCCCCCCCCceEEEc-----cCCcccccCCCchhhh
Q 006115 413 QGYGLTETCGPTTVCFPDEMCMVGTAGPVSVYSELRLEEVPEMGYSPLDDPPCGEVCVR-----GKTLFSGYYKNPDLTR 487 (660)
Q Consensus 413 ~~YG~tE~~~~~~~~~~~~~~~~~~~G~~~~~~~v~iv~~~~~~~~~~~~g~~GEi~v~-----g~~~~~gy~~~~~~~~ 487 (660)
+.||+||++..++..... ....+++|+|+++++++|+| +++. +++.|+.|||+|+ |++++.||+++++.+.
T Consensus 352 ~~YG~TE~~~~~~~~~~~-~~~~~~vG~p~~~~~v~i~d-~~g~--~~~~G~~GEl~v~~~~~~g~~v~~GY~~~~~~t~ 427 (570)
T 3c5e_A 352 ESYGQTETGLTCMVSKTM-KIKPGYMGTAASCYDVQIID-DKGN--VLPPGTEGDIGIRVKPIRPIGIFSGYVDNPDKTA 427 (570)
T ss_dssp EEEEETTTEEEEECCTTS-CCCTTCCCEECTTCCEEEEC-TTSC--BCCTTCCEEEEEECSSBCCTTCCCEETTCHHHHH
T ss_pred hccchhhcccceecCccc-ccCCCcccccCCCceEEEEC-CCCC--CCCCCCCCeeEEeccCCCCchhhccccCChhHhh
Confidence 999999999766554332 23458899999999999999 6654 4566789999999 9999999999999999
Q ss_pred hcccCCccccCceEEECCCCcEEEEeccCCeeEcCCCeeecchhHHHHHhcCcCcceEEEEecCCC---CeEEEEEEcCh
Q 006115 488 ESIIDGWFHTGDIGQILPNGVVKIIDRKKNLIKISQGEYVALEYLENVYCVAPIIEDIWVYGDSLK---SMLVAVVVPCE 564 (660)
Q Consensus 488 ~~f~~g~~~TGDl~~~~~~G~l~~~GR~~d~i~~~~G~~v~~~~iE~~l~~~p~V~~~~v~~~~~~---~~~~a~v~~~~ 564 (660)
+.|.+|||+|||+|++|+||+|+++||.||+||+ +|++|+|.+||++|.+||+|.+|+|++.+++ +.++|+|++.+
T Consensus 428 ~~f~~~~~~TGDlg~~d~dG~l~~~GR~dd~Ik~-~G~~V~p~eIE~~l~~~p~V~~a~Vv~~~~~~~g~~~~a~vv~~~ 506 (570)
T 3c5e_A 428 ANIRGDFWLLGDRGIKDEDGYFQFMGRADDIINS-SGYRIGPSEVENALMEHPAVVETAVISSPDPVRGEVVKAFVVLAS 506 (570)
T ss_dssp HTEETTEEEEEEEEEECTTSCEEEEEEGGGCEEE-TTEEECHHHHHHHHHTSTTEEEEEEEEEEETTTEEEEEEEEEECG
T ss_pred hhhcCCccccceeEEEcCCceEEEEecCCCEEEE-CCEEECHHHHHHHHHhCCCcceEEEEeeeCCCCCeEEEEEEEECC
Confidence 9999999999999999999999999999999996 8999999999999999999999999997654 37889999876
Q ss_pred hhHHHHHHHCCCCCcHHHHhccHHHHHHHHHHHHHHHHHCCCCCceeeeEEEEecCCCCCCCCccccccccchHHHHHHH
Q 006115 565 EDTKKWAYSNGHAGSFLELCSLVQLQNYILSELKNAAERNKLRGFEHIKGVILDPRPFDMERDLVTATLKKKRNKLLIYY 644 (660)
Q Consensus 565 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~l~~~~~p~~i~~~~~~~~~~~~P~t~~GKv~R~~l~~~~ 644 (660)
+... .. .+.+.++|+++++ ..||.|++|+.|++++ .+|+|++||++|++|++.+
T Consensus 507 ~~~~----------------~~---~~~~~~~l~~~l~-~~L~~~~~P~~i~~v~------~lP~t~~GKi~R~~L~~~~ 560 (570)
T 3c5e_A 507 QFLS----------------HD---PEQLTKELQQHVK-SVTAPYKYPRKIEFVL------NLPKTVTGKIQRAKLRDKE 560 (570)
T ss_dssp GGTT----------------SC---HHHHHHHHHHHHH-HHSCGGGSCSEEEEES------CCCBCTTCCBCHHHHHHHH
T ss_pred cccC----------------cc---hHHHHHHHHHHHH-hhCccccCCcEEEEec------cCCCCCCcCCcHHHHHHHH
Confidence 5300 00 1123345555554 6799999999999984 4699999999999999887
Q ss_pred HH
Q 006115 645 QV 646 (660)
Q Consensus 645 ~~ 646 (660)
..
T Consensus 561 ~~ 562 (570)
T 3c5e_A 561 WK 562 (570)
T ss_dssp TC
T ss_pred Hh
Confidence 43
No 14
>1ry2_A Acetyl-coenzyme A synthetase 1, acyl-activating enzyme 1; AMP forming, related to firefly luciferase, ligase; HET: AMP; 2.30A {Saccharomyces cerevisiae} SCOP: e.23.1.1
Probab=100.00 E-value=1.2e-72 Score=634.16 Aligned_cols=533 Identities=18% Similarity=0.199 Sum_probs=415.4
Q ss_pred CCCCcHHHHHHHHHHhCCCCCceeeeccccCCCCCceEEeHHHHHHHHHHHHHHHH-HcCCCCCCEEEEEeCChhhHHHH
Q 006115 39 SDLNTAWDIFSMSVQKYPGNRMLGWRPFVDGKFGPYVWKTYKEVYEEVLQIVSALR-ASGAEPGCRVGIYGANCPQWVEA 117 (660)
Q Consensus 39 ~~~~ti~~~l~~~a~~~pd~~a~~~~~~~~~~~~~~~~~Ty~el~~~~~~lA~~L~-~~gv~~gd~V~l~~~n~~~~~~~ 117 (660)
...+++.++|+++++++||++|+++. +...+..+++||+||.++++++|++|+ +.|+++||+|+++++|+++++++
T Consensus 79 ~~~n~~~~~l~~~a~~~pd~~Al~~~---~~~~~~~~~~TY~eL~~~v~~lA~~L~~~~Gv~~Gd~V~i~~~~~~e~v~a 155 (663)
T 1ry2_A 79 GQLNACYNCVDRHALKTPNKKAIIFE---GDEPGQGYSITYKELLEEVCQVAQVLTYSMGVRKGDTVAVYMPMVPEAIIT 155 (663)
T ss_dssp CEECHHHHHTHHHHTTCTTSEEEEEE---CSSTTCCEEEEHHHHHHHHHHHHHHHHHTSCCCTTCEEEECCCSSHHHHHH
T ss_pred CCccHHHHHHHHHhccCCCceEEEEE---cCCCCceEEEEHHHHHHHHHHHHHHHHHhcCCCCCCEEEEEcCCCHHHHHH
Confidence 34588999999999999999999985 433445589999999999999999999 99999999999999999999999
Q ss_pred HHHHHhCCCeEeecCCCCChhhHHHHhhcccceEEEEccchhhh--------hhccccccccCccEEEEecCCcHHHHHH
Q 006115 118 MEACNALSLICVPLYDTLGPGAVNFILDHAEIDFVFVQDKKVKE--------LLSPDCRSAQRLRVMVCFTSLTAEQKEM 189 (660)
Q Consensus 118 ~lA~~~~G~~~v~i~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~--------~~~~~~~~~~~~~~i~~~~~~~~~~~~~ 189 (660)
+|||+++|++++|+++.++.+++.++|++++++++|+++..... .........+.++.+++++......
T Consensus 156 ~lA~~~~Gav~vpl~~~~~~~~l~~~l~~~~~~~li~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vi~~~~~~~~~--- 232 (663)
T 1ry2_A 156 LLAISRIGAIHSVVFAGFSSNSLRDRINDGDSKVVITTDESNRGGKVIETKRIVDDALRETPGVRHVLVYRKTNNPS--- 232 (663)
T ss_dssp HHHHHHTTCEEEECCTTSCHHHHHHHHHHHTCSEEEEESBCCBTTBCCBHHHHHHHHTTSCTTCCEEEEECSSCCSS---
T ss_pred HHHHHHcCCEEEeeCCCCCHHHHHHHHHhcCCeEEEEccccccCCcccchHHHHHHHHHhCCCCceEEEEecCCCCc---
Confidence 99999999999999999999999999999999999998765321 1111111223455666655321000
Q ss_pred HhhCCceeeeHHHHHhcCccCCccCCCCCCCCeEEEEecCCCCCCCceeeeccHhHHHHhhh-cccccccccCCCCCCcE
Q 006115 190 AVQTGIKPYSWDEFLHLGKVNEMEILPPQPFNICTIMYTSGTSGDPKGVVLTHETIATFVSG-VDLFLDQFEDKMTVDDV 268 (660)
Q Consensus 190 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~i~~TSGTTG~pK~v~~th~~l~~~~~~-~~~~~~~~~~~~~~~d~ 268 (660)
.........+|.++..... ...+.....++++++|+|||||||.||||+++|.+++..+.. ....+ ++.++|+
T Consensus 233 ~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~d~a~ilyTSGTTG~PKgV~~sh~~~~~~~~~~~~~~~-----~~~~~d~ 306 (663)
T 1ry2_A 233 VAFHAPRDLDWATEKKKYK-TYYPCTPVDSEDPLFLLYTSGSTGAPKGVQHSTAGYLLGALLTMRYTF-----DTHQEDV 306 (663)
T ss_dssp CCCCSSSEEEHHHHHTTSC-SCCCCCCEETTSCCEEEEECCSSSSCEEEEECSHHHHHHHHHHHHHHS-----CCCSSCE
T ss_pred cccCCCccccHHHHHhhcC-CCCCccccCCCCceEEEeccCCCCCCceEEEchhHHHHHHHHHHHHhc-----CCCCCcE
Confidence 0000112346777765432 222334557899999999999999999999999998876643 33334 7889999
Q ss_pred EEEecChhhHHHHH-HHHHHhhcCcEEEEecC-----ChHHHHHHhhhhcCeEEEechHHHHHHHHHHHHHHHhhchHHH
Q 006115 269 YLSFLPLAHILDRV-IEEYFFRRGASVGYYHG-----DLNALRDDLMELKPTLLAGVPRVFEKIHEGIKKALEELRPLRR 342 (660)
Q Consensus 269 ~l~~~p~~~~~g~~-~~~~~l~~G~~~v~~~~-----~~~~~~~~i~~~~~t~l~~~p~~~~~l~~~~~~~~~~~~~~~~ 342 (660)
+++..|++|..|.. .++.++..|+++++++. ++..+++.|+++++|+++++|++++.|.+...
T Consensus 307 ~~~~~~~~~~~g~~~~~~~~L~~G~t~v~~~~~~~~~~~~~~~~~i~~~~vt~~~~~Ps~~~~l~~~~~----------- 375 (663)
T 1ry2_A 307 FFTAGDIGWITGHTYVVYGPLLYGCATLVFEGTPAYPNYSRYWDIIDEHKVTQFYVAPTALRLLKRAGD----------- 375 (663)
T ss_dssp EEECSCTTSHHHHHHTTHHHHHHTSEEEEECSCTTSSCTTHHHHHHHHTTCSEEEECHHHHHHHTTSCT-----------
T ss_pred EEEcCCcHHhhhhHHHHHHHHHhCCEEEEECCCCCCCCHHHHHHHHHHcCCCEEEecHHHHHHHHhcCc-----------
Confidence 99999999999985 46788999999999863 78999999999999999999999988753210
Q ss_pred HHHHHHHHHHHHHHhcCCCCCCcchhHHHHHHHHHHHHhCCcEeEEEEccCCCCHHHHHHHHHhcC---CceeeecCCCC
Q 006115 343 RIFDALYKYKLAWMNMGYKQREASPLADLLAFRKVKARLGGRLRLVISGGAPLSTEVEEFLRVTCC---AFLVQGYGLTE 419 (660)
Q Consensus 343 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~slr~v~~~G~~l~~~~~~~~~~~~~---~~v~~~YG~tE 419 (660)
...+..+ +++||.+++||+++++++.+++.+.+| +++++.||+||
T Consensus 376 ------------------------~~~~~~~--------l~sLr~i~~gGe~l~~~~~~~~~~~~g~~~~~i~~~YG~TE 423 (663)
T 1ry2_A 376 ------------------------SYIENHS--------LKSLRCLGSVGEPIAAEVWEWYSEKIGKNEIPIVDTYWQTE 423 (663)
T ss_dssp ------------------------TSSSSCC--------CTTCCEEEECSSCCCHHHHHHHHHTTSCSSSCEEECBCCTT
T ss_pred ------------------------cccccCC--------cCceEEEEEEcCCCCHHHHHHHHHHhCCCCceEEEeECCcc
Confidence 0001111 248999999999999999999999887 89999999999
Q ss_pred CCCceecccC-C-CccccCccCCCccCeeEEeeecC-CCCCCCCCC-CCCceEEEcc--CCcccccCCCchhhhhcc---
Q 006115 420 TCGPTTVCFP-D-EMCMVGTAGPVSVYSELRLEEVP-EMGYSPLDD-PPCGEVCVRG--KTLFSGYYKNPDLTRESI--- 490 (660)
Q Consensus 420 ~~~~~~~~~~-~-~~~~~~~~G~~~~~~~v~iv~~~-~~~~~~~~~-g~~GEi~v~g--~~~~~gy~~~~~~~~~~f--- 490 (660)
+++.++.... + ....++++|.|++|++++|+| + ++. +++. |+.|||+|+| |+++.|||++++.+.+.|
T Consensus 424 ~~~~~~~~~~~~~~~~~~gs~G~p~~g~~v~i~d-~~~g~--~v~~~g~~Gel~i~g~~p~~~~gy~~~~~~~~~~~~~~ 500 (663)
T 1ry2_A 424 SGSHLVTPLAGGVTPMKPGSASFPFFGIDAVVLD-PNTGE--ELNTSHAEGVLAVKAAWPSFARTIWKNHDRYLDTYLNP 500 (663)
T ss_dssp TCSCSEECCTTTCCCCCTTCCCEECTTCCEEEEC-SSSTT--CEECSSCEEEEEESSCCTTSCCEETTCHHHHHHHHTSS
T ss_pred ccCeeeccCCCCCcccCCCccccCcCCCeEEEEc-CCCCC--cCCCCCcceEEEEecCCCchhcccccChHHHHHhhhcC
Confidence 9987665543 2 234458999999999999999 5 443 3333 6789999999 589999999999988877
Q ss_pred cCCccccCceEEECCCCcEEEEeccCCeeEcCCCeeecchhHHHHHhcCcCcceEEEEecCCC---CeEEEEEEcChhhH
Q 006115 491 IDGWFHTGDIGQILPNGVVKIIDRKKNLIKISQGEYVALEYLENVYCVAPIIEDIWVYGDSLK---SMLVAVVVPCEEDT 567 (660)
Q Consensus 491 ~~g~~~TGDl~~~~~~G~l~~~GR~~d~i~~~~G~~v~~~~iE~~l~~~p~V~~~~v~~~~~~---~~~~a~v~~~~~~~ 567 (660)
.+|||+|||+|++|+||+++++||.||+||+ +|++|+|.+||++|.+||.|.+|+|++.+++ +.++|+|+++++..
T Consensus 501 ~~g~y~TGDlg~~d~dG~l~i~GR~dd~Ik~-~G~rI~~~eIE~~l~~~p~V~ea~Vvg~~~~~~g~~~~a~Vv~~~~~~ 579 (663)
T 1ry2_A 501 YPGYYFTGDGAAKDKDGYIWILGRVDDVVNV-SGHRLSTAEIEAAIIEDPIVAECAVVGFNDDLTGQAVAAFVVLKNKSS 579 (663)
T ss_dssp STTSEEEEEEEEECTTCCEEECSCTTSCBCS-SSCCBCHHHHHHHHHSSTTEEEEEEECCCCCTTSCCCEEEEEEC----
T ss_pred CCCEEEcCCEEEEcCCCCEEEEeecCCEEEE-CCEEcCHHHHHHHHHhCCCcceEEEEEEecCCCCeEEEEEEEEcCCCc
Confidence 3899999999999999999999999999997 7999999999999999999999999998764 47999999887531
Q ss_pred HHHHHHCCCCCcHHHHhccHHHHHHHHHHHHHHHHHCCCCCceeeeEEEEecCCCCCCCCccccccccchHHHHHHHHHH
Q 006115 568 KKWAYSNGHAGSFLELCSLVQLQNYILSELKNAAERNKLRGFEHIKGVILDPRPFDMERDLVTATLKKKRNKLLIYYQVE 647 (660)
Q Consensus 568 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~l~~~~~p~~i~~~~~~~~~~~~P~t~~GKv~R~~l~~~~~~~ 647 (660)
.. .. .++ ..+.+.++|+++++ ..||.|++|+.|++++ .+|+|++||++|++|++++..+
T Consensus 580 ~~-----~~--------~~~-~~~~l~~~l~~~l~-~~L~~~~~P~~i~~v~------~lP~T~sGKi~R~~L~~~~~~~ 638 (663)
T 1ry2_A 580 WS-----TA--------TDD-ELQDIKKHLVFTVR-KDIGPFAAPKLIILVD------DLPKTRSGKIMRRILRKILAGE 638 (663)
T ss_dssp ----------------------CCSHHHHHHHHHH-HHTCTTTSCSEEEECS------CCCBCTTSCBCHHHHHHSCC--
T ss_pred cc-----cc--------cch-hHHHHHHHHHHHHH-HhCCCCcCCeEEEEcC------CCCCCCccCchHHHHHHHHcCC
Confidence 00 00 000 00023345555554 6799999999999974 4699999999999999998776
Q ss_pred HHHH
Q 006115 648 IDQL 651 (660)
Q Consensus 648 l~~~ 651 (660)
++.+
T Consensus 639 ~~~~ 642 (663)
T 1ry2_A 639 SDQL 642 (663)
T ss_dssp ----
T ss_pred CCCC
Confidence 5443
No 15
>3ivr_A Putative long-chain-fatty-acid COA ligase; structural genomics, PSI-2, protein S initiative, fatty acid synthesis; HET: GOL; 2.00A {Rhodopseudomonas palustris} SCOP: e.23.1.0
Probab=100.00 E-value=8.2e-73 Score=619.48 Aligned_cols=492 Identities=23% Similarity=0.278 Sum_probs=325.6
Q ss_pred CCCcHHHHHHHHHHhCCCCCceeeeccccCCCCCceEEeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEeCChhhHHHHHH
Q 006115 40 DLNTAWDIFSMSVQKYPGNRMLGWRPFVDGKFGPYVWKTYKEVYEEVLQIVSALRASGAEPGCRVGIYGANCPQWVEAME 119 (660)
Q Consensus 40 ~~~ti~~~l~~~a~~~pd~~a~~~~~~~~~~~~~~~~~Ty~el~~~~~~lA~~L~~~gv~~gd~V~l~~~n~~~~~~~~l 119 (660)
...|+.++|+++|+++||++|+++. + +++||+||.++++++|++|++.|+++||+|+++++|++++++++|
T Consensus 4 ~~~tl~~~l~~~a~~~pd~~Al~~~----~-----~~~Ty~eL~~~~~~lA~~L~~~Gv~~gd~V~i~~~~~~~~~~~~l 74 (509)
T 3ivr_A 4 HDFTLADVYRRNAALFPDRTAFMVD----G-----VRLTHRDYLARAERLASGLLRDGVHTGDRVAILSQNCSEMIELIG 74 (509)
T ss_dssp TCCCHHHHHHHHHHHSTTSEEEEET----T-----EEEEHHHHHHHHHHHHHHHHHTTCCTTCEEEEECCSCHHHHHHHH
T ss_pred CcCCHHHHHHHHHHHCCCceEEEEC----C-----cEEcHHHHHHHHHHHHHHHHHcCCCCCCEEEEEcCCCHHHHHHHH
Confidence 4578999999999999999999874 3 689999999999999999999999999999999999999999999
Q ss_pred HHHhCCCeEeecCCCCChhhHHHHhhcccceEEEEccchhhhhhccccccccCccEEEEecCCcHHHHHHHhhCCceeee
Q 006115 120 ACNALSLICVPLYDTLGPGAVNFILDHAEIDFVFVQDKKVKELLSPDCRSAQRLRVMVCFTSLTAEQKEMAVQTGIKPYS 199 (660)
Q Consensus 120 A~~~~G~~~v~i~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~ 199 (660)
||+++|++++|++|.++.+++.++++.++++++|++......+.... ........++.+++... .
T Consensus 75 A~~~~Ga~~vpl~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~--------------~ 139 (509)
T 3ivr_A 75 AVALIGAILLPVNYRLNADEIAFVLGDGAPSVVVAGTDYRDIVAGVL-PSLGGVKKAYAIGDGSG--------------P 139 (509)
T ss_dssp HHHHTTCEEEECCTTSCHHHHHHHHHHHCEEEEEECSTTHHHHHHHG-GGCSSCCEEEESSCCCS--------------S
T ss_pred HHHHhCCEEEecCCCCCHHHHHHHHHhcCceEEEECcchhhhHHhhh-cccCCceEEEEcCCCCc--------------C
Confidence 99999999999999999999999999999999999988766533332 23345556666554211 1
Q ss_pred HHHHHhcCccCCccCCCCCCCCeEEEEecCCCCCCCceeeeccHhHHHHhhhcccccccccCCCCCCcEEEEecChhhHH
Q 006115 200 WDEFLHLGKVNEMEILPPQPFNICTIMYTSGTSGDPKGVVLTHETIATFVSGVDLFLDQFEDKMTVDDVYLSFLPLAHIL 279 (660)
Q Consensus 200 ~~~~~~~~~~~~~~~~~~~~~~~a~i~~TSGTTG~pK~v~~th~~l~~~~~~~~~~~~~~~~~~~~~d~~l~~~p~~~~~ 279 (660)
+.++...............++++++|+|||||||.||+|+++|+++.+.+......+ ++.++|++++.+|++|.+
T Consensus 140 ~~~~~~~~~~~~~~~~~~~~~d~a~i~~TSGTTG~PKgV~~sh~~l~~~~~~~~~~~-----~~~~~d~~l~~~p~~~~~ 214 (509)
T 3ivr_A 140 FAPFKDLASDTPFSAPEFGAADGFVIIHTAAVGGRPRGALISQGNLLIAQSSLVDAW-----RLTEADVNLGMLPLFHVT 214 (509)
T ss_dssp CEEGGGTCCCSCCCCCCCCTTSEEEEEEEEC--CCEEEEEEEHHHHHHHHHHHHHHT-----TCCTTCEEEECSCTTSHH
T ss_pred hhhHhhccCCCCCCcCCCCccccEEEEeCCCCCCCCcEEEEehHHHHHHHHHHHHhh-----CCCCCcEEEEeCCCcchh
Confidence 222222111222334456789999999999999999999999999999998887776 889999999999999999
Q ss_pred HHHHHHHHhh-cCcEEEEecCChHHHHHHhhhhcCeEEEechHHHHHHHHHHHHHHHhhchHHHHHHHHHHHHHHHHHhc
Q 006115 280 DRVIEEYFFR-RGASVGYYHGDLNALRDDLMELKPTLLAGVPRVFEKIHEGIKKALEELRPLRRRIFDALYKYKLAWMNM 358 (660)
Q Consensus 280 g~~~~~~~l~-~G~~~v~~~~~~~~~~~~i~~~~~t~l~~~p~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 358 (660)
|+...+.++. .|+++++...++..+++.++++++|+++++|+++..+++..
T Consensus 215 g~~~~~~~~~~~g~~~~~~~~~~~~~~~~i~~~~~t~~~~~p~~~~~l~~~~---------------------------- 266 (509)
T 3ivr_A 215 GLGLMLTLQQAGGASVIAAKFDPAQAARDIEAHKVTVMAEFAPMLGNILDQA---------------------------- 266 (509)
T ss_dssp HHHHHHHHHHHTCEEEECSSCCHHHHHHHHHHHTCCEEEEETTHHHHHHHHC----------------------------
T ss_pred HHHHHHHHHHhCCcEEEecccCHHHHHHHHHHHCCcEEEecHHHHHHHHhcc----------------------------
Confidence 9987766544 45555444449999999999999999999999999987532
Q ss_pred CCCCCCcchhHHHHHHHHHHHHhCCcEeEEEEccCCCCHHHHHHHHHhc-CCceeeecCCCCCCCceecccCCCccccCc
Q 006115 359 GYKQREASPLADLLAFRKVKARLGGRLRLVISGGAPLSTEVEEFLRVTC-CAFLVQGYGLTETCGPTTVCFPDEMCMVGT 437 (660)
Q Consensus 359 ~~~~~~~~~~~~~~~~~~~~~~~~~slr~v~~~G~~l~~~~~~~~~~~~-~~~v~~~YG~tE~~~~~~~~~~~~~~~~~~ 437 (660)
...++ +++|.++.+|++ +..+.+.+.+ ++++++.||+||++++++....... ..+
T Consensus 267 -----------~~~~l--------~~lr~~~~~g~~---~~~~~~~~~~~~~~~~~~YG~TE~~~~~~~~~~~~~--~~~ 322 (509)
T 3ivr_A 267 -----------APAQL--------ASLRAVTGLDTP---ETIERFEATCPNATFWATFGQSETSGLSTFAPYRDR--PKS 322 (509)
T ss_dssp -----------CGGGG--------TTCCEEEEECCH---HHHHHHHHHCTTCEEEEEEEEGGGTEEEEEEEGGGS--TTS
T ss_pred -----------cccch--------hhhheecccCCh---HHHHHHHHhcCCCeEEcccCccccccccccCccccC--CCc
Confidence 00011 489999999987 7788888888 9999999999999987766554322 245
Q ss_pred cCCCccCeeEEeeecCCCCCCCCCCCCCceEEEccCCcccccCCCchhhhhcccCCccccCceEEECCCCcEEEEecc--
Q 006115 438 AGPVSVYSELRLEEVPEMGYSPLDDPPCGEVCVRGKTLFSGYYKNPDLTRESIIDGWFHTGDIGQILPNGVVKIIDRK-- 515 (660)
Q Consensus 438 ~G~~~~~~~v~iv~~~~~~~~~~~~g~~GEi~v~g~~~~~gy~~~~~~~~~~f~~g~~~TGDl~~~~~~G~l~~~GR~-- 515 (660)
+|+|+++++++|+| +++. +++.|+.|||+|+|++++.||+++++.+.+.|.+|||+|||+|++|+||++++.||.
T Consensus 323 ~G~p~~~~~~~i~d-~~~~--~~~~g~~GEl~v~g~~~~~gY~~~~~~t~~~f~~g~~~TGDl~~~~~dG~l~~~GR~d~ 399 (509)
T 3ivr_A 323 AGRPLFWRTVAVVD-AEDR--PLPPGEVGEIVLRGPTVFKGYWNNAAATQHAFRNGWHHTGDMGRFDADGYLFYAGRAPE 399 (509)
T ss_dssp CCEECTTCEEEEEC-TTSC--BCCTTCCEEEEEESTTSCCEETTCHHHHHHHTGGGSEEEEEEEEECTTSCEEEEEEC--
T ss_pred ccccCCCcEEEEEC-CCCC--CCCCCCceEEEEecCCccccccCCHHHhHHHhhcCCcccccEEEECCCceEEEeCCCCc
Confidence 99999999999999 6654 556678999999999999999999999999999999999999999999999999999
Q ss_pred CCeeEcCCCeeecchhHHHHHhcCcCcceEEEEecCCCC---eEEEEEEcChhhHHHHHHHCCCCCcHHHHhccHHHHHH
Q 006115 516 KNLIKISQGEYVALEYLENVYCVAPIIEDIWVYGDSLKS---MLVAVVVPCEEDTKKWAYSNGHAGSFLELCSLVQLQNY 592 (660)
Q Consensus 516 ~d~i~~~~G~~v~~~~iE~~l~~~p~V~~~~v~~~~~~~---~~~a~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 592 (660)
+|+||+ +|++|+|.+||++|.+||+|.+|+|++.+++. .++|+|++.++... +
T Consensus 400 ~d~ik~-~G~~v~p~eiE~~l~~~p~V~~a~vv~~~~~~~~~~~~a~v~~~~~~~~----------------~------- 455 (509)
T 3ivr_A 400 KELIKT-GGENVYPAEVEGALKQHPAIADAVVIGVPDPQWSEAIKAVCVCKPGESI----------------A------- 455 (509)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred ceeEEE-CCEEECHHHHHHHHHhCCCceeEEEEeccccccCcEEEEEEEeCCCCCC----------------C-------
Confidence 999996 89999999999999999999999999987553 68888887764310 0
Q ss_pred HHHHHHHHHHHCCCCCceeeeEEEEecCCCCCCCCccccccccchHHHHHHHHHH
Q 006115 593 ILSELKNAAERNKLRGFEHIKGVILDPRPFDMERDLVTATLKKKRNKLLIYYQVE 647 (660)
Q Consensus 593 ~~~~l~~~~~~~~l~~~~~p~~i~~~~~~~~~~~~P~t~~GKv~R~~l~~~~~~~ 647 (660)
.++|++++ +..||.|++|+.|+++ +.+|+|++||++|++|++++++.
T Consensus 456 -~~~l~~~l-~~~L~~~~~P~~i~~v------~~lP~t~~GKidr~~Lr~~~~~~ 502 (509)
T 3ivr_A 456 -ADALAEFV-ASLIARYKKPKHVVFV------EALPKDAKGAIDRAAVKTAHGQE 502 (509)
T ss_dssp -------------------------------------------------------
T ss_pred -HHHHHHHH-HhhCcccCCCcEEEEe------cCCCCCCCCCccHHHHHHHHhhc
Confidence 12333444 3789999999999987 44699999999999999998753
No 16
>3e7w_A D-alanine--poly(phosphoribitol) ligase subunit 1; DLTA, non-ribosomal peptide synthetase, NRPS, adenylation domain, D-alanylation; HET: AMP; 2.28A {Bacillus subtilis} PDB: 3e7x_A*
Probab=100.00 E-value=1.4e-71 Score=609.79 Aligned_cols=487 Identities=18% Similarity=0.209 Sum_probs=405.8
Q ss_pred CcHHHHHHHHHHhCCCCCceeeeccccCCCCCceEEeHHHHHHHHHHHHHHHHHc-CCCCCCEEEEEeCChhhHHHHHHH
Q 006115 42 NTAWDIFSMSVQKYPGNRMLGWRPFVDGKFGPYVWKTYKEVYEEVLQIVSALRAS-GAEPGCRVGIYGANCPQWVEAMEA 120 (660)
Q Consensus 42 ~ti~~~l~~~a~~~pd~~a~~~~~~~~~~~~~~~~~Ty~el~~~~~~lA~~L~~~-gv~~gd~V~l~~~n~~~~~~~~lA 120 (660)
+++.++|+++|+++||++|+++. + +++||+||.++++++|++|.+. |.++||+|+++++|++++++++||
T Consensus 1 m~l~~~l~~~a~~~p~~~Al~~~----~-----~~~Ty~eL~~~~~~~A~~L~~~~~~~~g~~V~i~~~n~~~~~~~~lA 71 (511)
T 3e7w_A 1 MKLLHAIQTHAETYPQTDAFRSQ----G-----QSLTYQELWEQSDRAAAAIQKRISGEKKSPILVYGHMEPHMIVSFLG 71 (511)
T ss_dssp CCHHHHHHHHHHHSTTSEEEEET----T-----EEEEHHHHHHHHHHHHHHHTTTSCSSSCCCEEEEESSCHHHHHHHHH
T ss_pred CcHHHHHHHHHHHCCCCeEEEcC----C-----ceeeHHHHHHHHHHHHHHHHHhcCCCCCCeEEEEecCCHHHHHHHHH
Confidence 47899999999999999999864 3 6899999999999999999975 889999999999999999999999
Q ss_pred HHhCCCeEeecCCCCChhhHHHHhhcccceEEEEccchhhhhhccccccccCccEEEEecCCcHHHHHHHhhCCceeeeH
Q 006115 121 CNALSLICVPLYDTLGPGAVNFILDHAEIDFVFVQDKKVKELLSPDCRSAQRLRVMVCFTSLTAEQKEMAVQTGIKPYSW 200 (660)
Q Consensus 121 ~~~~G~~~v~i~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~ 200 (660)
|+++|++++|+++.++.+++.++++.++++++|++.......... ......+
T Consensus 72 ~~~~G~~~vpl~~~~~~~~l~~~l~~~~~~~li~~~~~~~~~~~~----------------------------~~~~~~~ 123 (511)
T 3e7w_A 72 SVKAGHPYIPVDLSIPSERIAKIIESSGAELLIHAAGLSIDAVGQ----------------------------QIQTVSA 123 (511)
T ss_dssp HHHHTCCEEEEETTSCHHHHHHHHHHHTCCEEEESSSCCTTCCCC----------------------------SSCEEEH
T ss_pred HHHhCCEEEecCCCChHHHHHHHHHhCCCCEEEecccccchhccc----------------------------ccceecH
Confidence 999999999999999999999999999999999976532211000 0112345
Q ss_pred HHHHhcCccCCccCCCCCCCCeEEEEecCCCCCCCceeeeccHhHHHHhhhcccccccccCCCCCCcEEEEecChhhHHH
Q 006115 201 DEFLHLGKVNEMEILPPQPFNICTIMYTSGTSGDPKGVVLTHETIATFVSGVDLFLDQFEDKMTVDDVYLSFLPLAHILD 280 (660)
Q Consensus 201 ~~~~~~~~~~~~~~~~~~~~~~a~i~~TSGTTG~pK~v~~th~~l~~~~~~~~~~~~~~~~~~~~~d~~l~~~p~~~~~g 280 (660)
.++...............++++++|+|||||||.||+|++||+++.+.+......+ ++..+|++++++|++|.++
T Consensus 124 ~~~~~~~~~~~~~~~~~~~~~~a~i~~TSGTTG~PKgV~~sh~~l~~~~~~~~~~~-----~~~~~d~~l~~~p~~~~~~ 198 (511)
T 3e7w_A 124 EELLENEGGSVSQDQWVKEHETFYIIYTSGSTGNPKGVQISAANLQSFTDWICADF-----PVSGGKIFLNQAPFSFDLS 198 (511)
T ss_dssp HHHHTSCSCCCCGGGSCCTTSEEEEEEECCTTSSCEEEEEEHHHHHHHHHHHHHHS-----TTTTTCEEEECSCTTSTHH
T ss_pred hhhhccccCCccccccCCCCCeEEEEECCCCCCCCCEEEEcHHHHHHHHHHHHHhc-----CCCccceEEEeCCccHHHH
Confidence 55554433222333445789999999999999999999999999999998877766 7889999999999999999
Q ss_pred HHHHHHHhhcCcEEEEecC----ChHHHHHHhhhhcCeEEEechHHHHHHHHHHHHHHHhhchHHHHHHHHHHHHHHHHH
Q 006115 281 RVIEEYFFRRGASVGYYHG----DLNALRDDLMELKPTLLAGVPRVFEKIHEGIKKALEELRPLRRRIFDALYKYKLAWM 356 (660)
Q Consensus 281 ~~~~~~~l~~G~~~v~~~~----~~~~~~~~i~~~~~t~l~~~p~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 356 (660)
+...+.++..|+++++.+. ++..+++.++++++|+++++|+++..++....
T Consensus 199 ~~~~~~~l~~G~~~~~~~~~~~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~------------------------- 253 (511)
T 3e7w_A 199 VMDLYPCLQSGGTLHCVTKDAVNKPKVLFEELKKSGLNVWTSTPSFVQMCLMDPG------------------------- 253 (511)
T ss_dssp HHHHHHHHHTTCEEEECCHHHHHSHHHHHHHHHHHCCSEEEECHHHHHHHHTSTT-------------------------
T ss_pred HHHHHHHHhcCCEEEEcChhhhcCHHHHHHHHHHcCCcEEEecHHHHHHHHhccc-------------------------
Confidence 8888889999999999864 78999999999999999999999988754210
Q ss_pred hcCCCCCCcchhHHHHHHHHHHHHhCCcEeEEEEccCCCCHHHHHHHHHhc-CCceeeecCCCCCCCceecccCCC----
Q 006115 357 NMGYKQREASPLADLLAFRKVKARLGGRLRLVISGGAPLSTEVEEFLRVTC-CAFLVQGYGLTETCGPTTVCFPDE---- 431 (660)
Q Consensus 357 ~~~~~~~~~~~~~~~~~~~~~~~~~~~slr~v~~~G~~l~~~~~~~~~~~~-~~~v~~~YG~tE~~~~~~~~~~~~---- 431 (660)
... ...+++|.+++||+++++++.+.+.+.+ ++++++.||+||+++.++......
T Consensus 254 ------------~~~--------~~~~~l~~~~~~G~~l~~~~~~~~~~~~~~~~i~~~YG~TE~~~~~~~~~~~~~~~~ 313 (511)
T 3e7w_A 254 ------------FSQ--------DLLPHADTFMFCGEVLPVSVAKALLERFPKAKIFNTYGPTEATVAVTSVEITNDVIS 313 (511)
T ss_dssp ------------CST--------TTCTTCCEEEECSSCCCHHHHHHHHHHCTTCEEEECCCCGGGSSCSEEEEECHHHHT
T ss_pred ------------ccc--------ccCCcccEEEEecCCCCHHHHHHHHHHCCCcEEEeCcccchheeeeeEEeccccccc
Confidence 000 1124899999999999999999999988 899999999999998776544322
Q ss_pred ccccCccCCCccCeeEEeeecCCCCCCCCCCCCCceEEEccCCcccccCCCchhhhhcc--cCC--ccccCceEEECCCC
Q 006115 432 MCMVGTAGPVSVYSELRLEEVPEMGYSPLDDPPCGEVCVRGKTLFSGYYKNPDLTRESI--IDG--WFHTGDIGQILPNG 507 (660)
Q Consensus 432 ~~~~~~~G~~~~~~~v~iv~~~~~~~~~~~~g~~GEi~v~g~~~~~gy~~~~~~~~~~f--~~g--~~~TGDl~~~~~~G 507 (660)
.....++|.|+++++++|+| +++. +++.|+.|||+|+|++++.||+++++.+.+.| .+| ||+|||+|++ +||
T Consensus 314 ~~~~~~~G~~~~~~~~~i~d-~~g~--~~~~g~~GEl~v~g~~v~~GY~~~~~~t~~~f~~~~g~~~~~TGDlg~~-~dG 389 (511)
T 3e7w_A 314 RSESLPVGFAKPDMNIFIMD-EEGQ--PLPEGEKGEIVIAGPSVSRGYLGEPELTEKAFFSHEGQWAYRTGDAGFI-QDG 389 (511)
T ss_dssp TCSSCCCBEECTTCEEEEEC-TTSC--BCCTTCCEEEEEESTTSCCCBTTCHHHHHHHEEESSSSEEEEEEEEEEE-ETT
T ss_pred cCCcCCCcceeCCCEEEEEC-CCCC--CCCCCCceEEEEecCccChhhCCCcccchhhhcCCCCCEEEeCCCeEEc-cCC
Confidence 12335799999999999999 6654 55677899999999999999999999999998 344 8999999999 599
Q ss_pred cEEEEeccCCeeEcCCCeeecchhHHHHHhcCcCcceEEEEecCCC---CeEEEEEEcChhhHHHHHHHCCCCCcHHHHh
Q 006115 508 VVKIIDRKKNLIKISQGEYVALEYLENVYCVAPIIEDIWVYGDSLK---SMLVAVVVPCEEDTKKWAYSNGHAGSFLELC 584 (660)
Q Consensus 508 ~l~~~GR~~d~i~~~~G~~v~~~~iE~~l~~~p~V~~~~v~~~~~~---~~~~a~v~~~~~~~~~~~~~~~~~~~~~~~~ 584 (660)
+++++||.||+|++ +|++|+|.+||++|.+||.|.+|+|++.+++ ..++|+|++.++.. .
T Consensus 390 ~l~~~GR~~d~ik~-~G~~v~p~eIE~~l~~~p~V~~a~vv~~~~~~~~~~~~a~vv~~~~~~----------~------ 452 (511)
T 3e7w_A 390 QIFCQGRLDFQIKL-HGYRMELEEIEFHVRQSQYVRSAVVIPYQPNGTVEYLIAAIVPEEHEF----------E------ 452 (511)
T ss_dssp EEEEEEESSSEEEE-TTEEEEHHHHHHHHHHSTTEEEEEEEEECSSSSCCEEEEEEEECCCCC----------S------
T ss_pred eEEEEccccCEEEE-CCEEeCHHHHHHHHHhCCCcceEEEEEEcCCCCceEEEEEEEeccccc----------c------
Confidence 99999999999997 8999999999999999999999999987644 37889998876430 0
Q ss_pred ccHHHHHHHHHHHHHHHHHCCCCCceeeeEEEEecCCCCCCCCccccccccchHHHHHHHHHH
Q 006115 585 SLVQLQNYILSELKNAAERNKLRGFEHIKGVILDPRPFDMERDLVTATLKKKRNKLLIYYQVE 647 (660)
Q Consensus 585 ~~~~~~~~~~~~l~~~~~~~~l~~~~~p~~i~~~~~~~~~~~~P~t~~GKv~R~~l~~~~~~~ 647 (660)
.. ..+.+.|+++++ +.||.|++|+.++++ +.+|+|++||++|++|++++.++
T Consensus 453 ~~----~~~~~~l~~~l~-~~L~~~~~P~~~~~v------~~lP~t~~GKi~R~~L~~~~~~~ 504 (511)
T 3e7w_A 453 KE----FQLTSAIKKELA-ASLPAYMIPRKFIYQ------DHIQMTANGKIDRKRIGEEVLVR 504 (511)
T ss_dssp SH----HHHHHHHHHHHH-HHSCGGGSCSEEEEC------SCCCBCTTSCBCHHHHHHHHHHH
T ss_pred ch----hhHHHHHHHHHH-hhCchhhCCeeEEEe------ccCCCCCCcCccHHHHHhHHhhh
Confidence 11 123344555554 679999999999987 45699999999999999998753
No 17
>3fce_A D-alanine--poly(phosphoribitol) ligase subunit 1; DLTA, AMP-forming domain, adenylation, D-alanine protein ligase, ATP complex; HET: ATP; 1.90A {Bacillus cereus} PDB: 3fcc_A* 3dhv_A*
Probab=100.00 E-value=6.9e-72 Score=612.57 Aligned_cols=488 Identities=18% Similarity=0.196 Sum_probs=399.9
Q ss_pred CcHHHHHHHHHHhCCCCCceeeeccccCCCCCceEEeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEeCChhhHHHHHHHH
Q 006115 42 NTAWDIFSMSVQKYPGNRMLGWRPFVDGKFGPYVWKTYKEVYEEVLQIVSALRASGAEPGCRVGIYGANCPQWVEAMEAC 121 (660)
Q Consensus 42 ~ti~~~l~~~a~~~pd~~a~~~~~~~~~~~~~~~~~Ty~el~~~~~~lA~~L~~~gv~~gd~V~l~~~n~~~~~~~~lA~ 121 (660)
+|+.+.|+++|+++||++|+++. + +++||+||.++++++|++|.+.|+++||+|+++++|++++++++|||
T Consensus 1 m~l~~~l~~~a~~~p~~~A~~~~---~------~~~Ty~el~~~~~~lA~~L~~~g~~~gd~V~i~~~n~~e~~~~~la~ 71 (512)
T 3fce_A 1 MKLLEQIEKWAAETPDQTAFVWR---D------AKITYKQLKEDSDALAHWISSEYPDDRSPIMVYGHMQPEMIINFLGC 71 (512)
T ss_dssp CCHHHHHHHHHHHSTTSEEEEET---T------EEEEHHHHHHHHHHHHHHHHHHSTTCCCCEEEEESSCHHHHHHHHHH
T ss_pred CcHHHHHHHHHHHCCCceEEEeC---C------ceEEHHHHHHHHHHHHHHHHHhCCCCCCEEEEEeCCCHHHHHHHHHH
Confidence 47899999999999999999875 3 58999999999999999999999999999999999999999999999
Q ss_pred HhCCCeEeecCCCCChhhHHHHhhcccceEEEEccchhhhhhccccccccCccEEEEecCCcHHHHHHHhhCCceeeeHH
Q 006115 122 NALSLICVPLYDTLGPGAVNFILDHAEIDFVFVQDKKVKELLSPDCRSAQRLRVMVCFTSLTAEQKEMAVQTGIKPYSWD 201 (660)
Q Consensus 122 ~~~G~~~v~i~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~ 201 (660)
+++|++++|++|.++.+++.++++.++++++|++....... ... .++..+ .+.
T Consensus 72 ~~~G~v~vpl~~~~~~~~l~~il~~~~~~~~i~~~~~~~~~--------~~~-~~~~~~------------------~~~ 124 (512)
T 3fce_A 72 VKAGHAYIPVDLSIPADRVQRIAENSGAKLLLSATAVTVTD--------LPV-RIVSED------------------NLK 124 (512)
T ss_dssp HHTTCCEEEEETTSCHHHHHHHHHHSCCCEEEESSCCCSSC--------CSS-EEEETH------------------HHH
T ss_pred HHhCCEEEeeCCCCcHHHHHHHHHhcCCCEEEecCcccccc--------ccc-ceechh------------------hhh
Confidence 99999999999999999999999999999999986432110 000 111100 111
Q ss_pred HHHh-cCccCCccCCCCCCCCeEEEEecCCCCCCCceeeeccHhHHHHhhhcccccccccCCCCCCcEEEEecChhhHHH
Q 006115 202 EFLH-LGKVNEMEILPPQPFNICTIMYTSGTSGDPKGVVLTHETIATFVSGVDLFLDQFEDKMTVDDVYLSFLPLAHILD 280 (660)
Q Consensus 202 ~~~~-~~~~~~~~~~~~~~~~~a~i~~TSGTTG~pK~v~~th~~l~~~~~~~~~~~~~~~~~~~~~d~~l~~~p~~~~~g 280 (660)
.+.. .......+.....++++++|+|||||||.||+|++||+++.+.+......+ ++.++|++++++|++|.++
T Consensus 125 ~~~~~~~~~~~~~~~~~~~~d~a~i~~TSGTTG~PKgv~~th~~l~~~~~~~~~~~-----~~~~~d~~l~~~p~~~~~~ 199 (512)
T 3fce_A 125 DIFFTHKGNTPNPEHAVKGDENFYIIYTSGSTGNPKGVQITYNCLVSFTKWAVEDF-----NLQTGQVFLNQAPFSFDLS 199 (512)
T ss_dssp HHHHHTTTCCCCGGGSCCTTSEEEEEEECC----CEEEEEEHHHHHHHHHHHHHHT-----TCCSSCEEEECSCTTSGGG
T ss_pred hhcccccccCCCccccCCCCCeEEEEECCCCCCCCceEEEehHHHHHHHHHHHHhc-----CCCCCCEEEEeCCccHhHH
Confidence 1111 111122233456789999999999999999999999999999998877776 7899999999999999999
Q ss_pred HHHHHHHhhcCcEEEEecC----ChHHHHHHhhhhcCeEEEechHHHHHHHHHHHHHHHhhchHHHHHHHHHHHHHHHHH
Q 006115 281 RVIEEYFFRRGASVGYYHG----DLNALRDDLMELKPTLLAGVPRVFEKIHEGIKKALEELRPLRRRIFDALYKYKLAWM 356 (660)
Q Consensus 281 ~~~~~~~l~~G~~~v~~~~----~~~~~~~~i~~~~~t~l~~~p~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 356 (660)
+..++.+++.|+++++.+. ++..+++.++++++|+++++|+++..++....
T Consensus 200 ~~~~~~~l~~G~~~~~~~~~~~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~------------------------- 254 (512)
T 3fce_A 200 VMDIYPSLVTGGTLWAIDKDMIARPKDLFASLEQSDIQVWTSTPSFAEMCLMEAS------------------------- 254 (512)
T ss_dssp HHHHHHHHHTTCEEEECCHHHHHSHHHHHHHHHHHCCCEEEECHHHHHHHTTSTT-------------------------
T ss_pred HHHHHHHHhCCCEEEECCHHHhhCHHHHHHHHHHcCCcEEEecHHHHHHHHhhcc-------------------------
Confidence 8888889999999999874 89999999999999999999999988753210
Q ss_pred hcCCCCCCcchhHHHHHHHHHHHHhCCcEeEEEEccCCCCHHHHHHHHHhc-CCceeeecCCCCCCCceecccCCC----
Q 006115 357 NMGYKQREASPLADLLAFRKVKARLGGRLRLVISGGAPLSTEVEEFLRVTC-CAFLVQGYGLTETCGPTTVCFPDE---- 431 (660)
Q Consensus 357 ~~~~~~~~~~~~~~~~~~~~~~~~~~~slr~v~~~G~~l~~~~~~~~~~~~-~~~v~~~YG~tE~~~~~~~~~~~~---- 431 (660)
... ...+++|.+++||+++++++.+.+.+.+ ++++++.||+||+++.++......
T Consensus 255 ------------~~~--------~~~~~lr~~~~~G~~l~~~~~~~~~~~~~~~~i~~~YG~TE~~~~~~~~~~~~~~~~ 314 (512)
T 3fce_A 255 ------------FSE--------SMLPNMKTFLFCGEVLPNEVARKLIERFPKATIMNTYGPTEATVAVTGIHVTEEVLD 314 (512)
T ss_dssp ------------CST--------TTSTTCCEEEECSSCCCHHHHHHHHHHCTTCEEEEEECCGGGSSCSEEEECCHHHHH
T ss_pred ------------ccc--------hhCccccEEEEecCcCCHHHHHHHHHHCCCCEEEeCcccChhhhheeeEEecccccc
Confidence 000 1124899999999999999999999988 899999999999998776554332
Q ss_pred ccccCccCCCccCeeEEeeecCCCCCCCCCCCCCceEEEccCCcccccCCCchhhhhccc----CCccccCceEEECCCC
Q 006115 432 MCMVGTAGPVSVYSELRLEEVPEMGYSPLDDPPCGEVCVRGKTLFSGYYKNPDLTRESII----DGWFHTGDIGQILPNG 507 (660)
Q Consensus 432 ~~~~~~~G~~~~~~~v~iv~~~~~~~~~~~~g~~GEi~v~g~~~~~gy~~~~~~~~~~f~----~g~~~TGDl~~~~~~G 507 (660)
.....++|.|+++++++++| +++. +++.|+.|||+|+||+++.||+++++.+.+.|. +|||+|||+|++ +||
T Consensus 315 ~~~~~~~G~~~~~~~~~i~d-~~g~--~~~~g~~GEl~v~g~~v~~GY~~~~~~t~~~f~~~~~~~~~~TGDlg~~-~dG 390 (512)
T 3fce_A 315 QYKSLPVGYCKSDCRLLIMK-EDGT--IAPDGEKGEIVIVGPSVSVGYLGSPELTEKAFTMIDGERAYKTGDAGYV-ENG 390 (512)
T ss_dssp HCSSCCCEEECTTCEEEEEC-SSSC--BCCTTSCEEEEEESTTSCSCBTTCHHHHHHHEEEETTEEEEEEEEEEEE-ETT
T ss_pred ccCCCccccccCCcEEEEEC-CCCC--CCCCCCeEEEEEeccccChhhcCCchhhhhccccCCCCEEEeCCceEEe-cCC
Confidence 12346799999999999999 6554 455678999999999999999999999999983 569999999999 799
Q ss_pred cEEEEeccCCeeEcCCCeeecchhHHHHHhcCcCcceEEEEecCCC---CeEEEEEEcChhhHHHHHHHCCCCCcHHHHh
Q 006115 508 VVKIIDRKKNLIKISQGEYVALEYLENVYCVAPIIEDIWVYGDSLK---SMLVAVVVPCEEDTKKWAYSNGHAGSFLELC 584 (660)
Q Consensus 508 ~l~~~GR~~d~i~~~~G~~v~~~~iE~~l~~~p~V~~~~v~~~~~~---~~~~a~v~~~~~~~~~~~~~~~~~~~~~~~~ 584 (660)
++++.||.||+|++ +|++|+|.+||++|.+||+|.+|+|++.++. +.++|+|++.++.. .
T Consensus 391 ~l~i~GR~~d~ik~-~G~~v~p~eIE~~l~~~p~V~~a~vv~~~~~~~~~~~~a~vv~~~~~~----------~------ 453 (512)
T 3fce_A 391 LLFYNGRLDFQIKL-HGYRMELEEIEHHLRACSYVEGAVIVPIKKGEKYDYLLAVVVPGEHSF----------E------ 453 (512)
T ss_dssp EEEEEEEGGGCEEE-TTEEECHHHHHHHHHHSTTEEEEEEEEEEETTEEEEEEEEEEECSCCC----------S------
T ss_pred EEEEecccCCEEEE-CCEEECHHHHHHHHHhCCCcceEEEEEEecCCCceEEEEEEecCCccc----------c------
Confidence 99999999999997 8999999999999999999999999986644 36888988876420 0
Q ss_pred ccHHHHHHHHHHHHHHHHHCCCCCceeeeEEEEecCCCCCCCCccccccccchHHHHHHHHHH
Q 006115 585 SLVQLQNYILSELKNAAERNKLRGFEHIKGVILDPRPFDMERDLVTATLKKKRNKLLIYYQVE 647 (660)
Q Consensus 585 ~~~~~~~~~~~~l~~~~~~~~l~~~~~p~~i~~~~~~~~~~~~P~t~~GKv~R~~l~~~~~~~ 647 (660)
.. ..+.+.|+++++ ..||.|++|+.++++ +.+|+|++||++|++|++.++++
T Consensus 454 ~~----~~~~~~l~~~l~-~~L~~~~~P~~~~~~------~~lP~t~~GKi~R~~L~~~~~~~ 505 (512)
T 3fce_A 454 KE----FKLTSAIKKELN-ERLPNYMIPRKFMYQ------SSIPMTPNGKVDRKKLLSEVTAL 505 (512)
T ss_dssp SH----HHHHHHHHHHHH-TTSCGGGSCSEEEEC------SCCCBCTTSSBCHHHHHHHHHC-
T ss_pred ch----hhhHHHHHHHHH-hhCchhcCCeEEEEe------cccCCCCCcChHHHHHHhhhhhc
Confidence 11 123345566664 889999999999987 45699999999999999998753
No 18
>2v7b_A Benzoate-coenzyme A ligase; benzoate oxidation, benzoate COA ligase; 1.84A {Burkholderia xenovorans}
Probab=100.00 E-value=4.7e-71 Score=608.44 Aligned_cols=503 Identities=21% Similarity=0.218 Sum_probs=397.0
Q ss_pred CCCCCCcHHHHHHHHHHhCCCCCceeeeccccCCCCCceEEeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEeCChhhHHH
Q 006115 37 VDSDLNTAWDIFSMSVQKYPGNRMLGWRPFVDGKFGPYVWKTYKEVYEEVLQIVSALRASGAEPGCRVGIYGANCPQWVE 116 (660)
Q Consensus 37 ~~~~~~ti~~~l~~~a~~~pd~~a~~~~~~~~~~~~~~~~~Ty~el~~~~~~lA~~L~~~gv~~gd~V~l~~~n~~~~~~ 116 (660)
+|..++++.++|.++++ +||++|+++. + +++||+||.++++++|++|++.|+++||+|+++++|++++++
T Consensus 19 ~p~~~~~~~~~l~~~~~-~p~~~A~~~~----~-----~~~Ty~el~~~~~~lA~~L~~~Gv~~gd~V~i~~~n~~~~~~ 88 (529)
T 2v7b_A 19 PPALFNFAAYLFRLNET-RAGKTAYIDD----T-----GSTTYGELEERARRFASALRTLGVHPEERILLVMLDTVALPV 88 (529)
T ss_dssp ---CCCHHHHHHHHTGG-GTTSEEEECS----S-----CEEEHHHHHHHHHHHHHHHHHTTCCTTCEEEEECCSSTHHHH
T ss_pred CccceeHHHHHHHhhhc-cCCceEEEeC----C-----CCccHHHHHHHHHHHHHHHHHcCCCCCCEEEEEcCCcHHHHH
Confidence 44567789999999999 9999999864 2 589999999999999999999999999999999999999999
Q ss_pred HHHHHHhCCCeEeecCCCCChhhHHHHhhcccceEEEEccchhhhhhccccccccCc-cEEEEecCCcHHHHHHHhhCCc
Q 006115 117 AMEACNALSLICVPLYDTLGPGAVNFILDHAEIDFVFVQDKKVKELLSPDCRSAQRL-RVMVCFTSLTAEQKEMAVQTGI 195 (660)
Q Consensus 117 ~~lA~~~~G~~~v~i~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~~~~~~~~-~~i~~~~~~~~~~~~~~~~~~~ 195 (660)
++|||+++|++++|+++.++.+++.++|+.++++++|++......+..... ..... ..++..+.... ...
T Consensus 89 ~~lA~~~~G~~~vpl~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~--------~~~ 159 (529)
T 2v7b_A 89 AFLGALYAGVVPVVANTLLTPADYVYMLTHSHARAVIASGALVQNVTQALE-SAEHDGCQLIVSQPRES--------EPR 159 (529)
T ss_dssp HHHHHHHHTCEEEECCTTCCHHHHHHHHHHHTCSEEEEEGGGHHHHHHHHH-CC---CCEEEEECC--------------
T ss_pred HHHHHHHcCceEEecCcccCHHHHHHHHhccCCeEEEechhhhhHHHHHHh-hccccCceEEEeccccc--------ccc
Confidence 999999999999999999999999999999999999999876654432211 11122 33444333211 000
Q ss_pred eeeeHHHHHhcCccCCccCCCCCCCCeEEEEecCCCCCCCceeeeccHhH-HHHhhhcccccccccCCCCCCcEEEEecC
Q 006115 196 KPYSWDEFLHLGKVNEMEILPPQPFNICTIMYTSGTSGDPKGVVLTHETI-ATFVSGVDLFLDQFEDKMTVDDVYLSFLP 274 (660)
Q Consensus 196 ~~~~~~~~~~~~~~~~~~~~~~~~~~~a~i~~TSGTTG~pK~v~~th~~l-~~~~~~~~~~~~~~~~~~~~~d~~l~~~p 274 (660)
....+.++..... .........++++++++|||||||.||+|++||+++ .+........+ ++.++|++++++|
T Consensus 160 ~~~~~~~~~~~~~-~~~~~~~~~~~d~a~i~~TSGTTG~PKgv~~sh~~l~~~~~~~~~~~~-----~~~~~d~~~~~~p 233 (529)
T 2v7b_A 160 LAPLFEELIDAAA-PAAKAAATGCDDIAFWLYSSGSTGKPKGTVHTHANLYWTAELYAKPIL-----GIAENDVVFSAAK 233 (529)
T ss_dssp CCCBHHHHHHTSC-CCSSCCCCCTTSEEEEEEC-----CCCEEEEEHHHHHHHHHHTCCCCC-----CCCTTCEEEESSC
T ss_pred cccchhhhhccCC-CcccccCCCCCCeEEEEECCCCCCCCceEEEEhhHHHHHHHHHhhhcc-----CCCCCcEEEEeec
Confidence 1124556554321 122233457899999999999999999999999999 66665554444 7889999999999
Q ss_pred hhhHHHHHH-HHHHhhcCcEEEEec-C-ChHHHHHHhhhhcCeEEEechHHHHHHHHHHHHHHHhhchHHHHHHHHHHHH
Q 006115 275 LAHILDRVI-EEYFFRRGASVGYYH-G-DLNALRDDLMELKPTLLAGVPRVFEKIHEGIKKALEELRPLRRRIFDALYKY 351 (660)
Q Consensus 275 ~~~~~g~~~-~~~~l~~G~~~v~~~-~-~~~~~~~~i~~~~~t~l~~~p~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~ 351 (660)
++|.+|+.. .+.++..|+++++.+ . ++..+++.++++++|+++++|+++..++....
T Consensus 234 ~~~~~g~~~~~~~~l~~G~~~v~~~~~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~-------------------- 293 (529)
T 2v7b_A 234 LFFAYGLGNGLTFPLSVGATAILMAERPTADAIFARLVEHRPTVFYGVPTLYANMLVSPN-------------------- 293 (529)
T ss_dssp TTSHHHHHHHTHHHHHHTCEEECCCSCCCHHHHHHHHHHSCCSEEEECHHHHHHHHTCTT--------------------
T ss_pred HHHHHHHHHHHHHHHhcCcEEEEecCCCCHHHHHHHHHHhCCEEEEecHHHHHHHHhCcc--------------------
Confidence 999999875 567899999999873 3 89999999999999999999999988754200
Q ss_pred HHHHHhcCCCCCCcchhHHHHHHHHHHHHhCCcEeEEEEccCCCCHHHHHHHHHhcCCceeeecCCCCCCCceecccCCC
Q 006115 352 KLAWMNMGYKQREASPLADLLAFRKVKARLGGRLRLVISGGAPLSTEVEEFLRVTCCAFLVQGYGLTETCGPTTVCFPDE 431 (660)
Q Consensus 352 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~slr~v~~~G~~l~~~~~~~~~~~~~~~v~~~YG~tE~~~~~~~~~~~~ 431 (660)
..... ..++|.+++||+++++++.+.+++.+|+++++.||+||++.+++......
T Consensus 294 -------------~~~~~------------~~~lr~~~~gGe~l~~~~~~~~~~~~g~~i~~~YG~TE~~~~~~~~~~~~ 348 (529)
T 2v7b_A 294 -------------LPARA------------DVAIRICTSAGEALPREIGERFTAHFGCEILDGIGSTEMLHIFLSNRAGA 348 (529)
T ss_dssp -------------CCCGG------------GCCCCEEEECSSCCCHHHHHHHHHHHSCCEEEEEECTTTSSEEEECCTTC
T ss_pred -------------ccccc------------CCceEEEEEcCCCCCHHHHHHHHHHhCCceeeeEchhhcCceeeccccCC
Confidence 00000 03899999999999999999999989999999999999977665554433
Q ss_pred ccccCccCCCccCeeEEeeecCCCCCCCCCCCCCceEEEccCCcccccCCCchhhhhcccCCccccCceEEECCCCcEEE
Q 006115 432 MCMVGTAGPVSVYSELRLEEVPEMGYSPLDDPPCGEVCVRGKTLFSGYYKNPDLTRESIIDGWFHTGDIGQILPNGVVKI 511 (660)
Q Consensus 432 ~~~~~~~G~~~~~~~v~iv~~~~~~~~~~~~g~~GEi~v~g~~~~~gy~~~~~~~~~~f~~g~~~TGDl~~~~~~G~l~~ 511 (660)
...+++|.|+++++++|+| +++. +++.|+.|||+|+|++++.||+++++.+...|.+|||+|||+|+++++|++++
T Consensus 349 -~~~~~~G~p~~~~~~~i~d-~~g~--~~~~g~~GEl~v~g~~~~~gY~~~~~~t~~~f~~~~~~TGDl~~~~~~G~l~~ 424 (529)
T 2v7b_A 349 -VEYGTTGRPVPGYEIELRD-EAGH--AVPDGEVGDLYIKGPSAAVMYWNNREKSRATFLGEWIRSGDKYCRLPNGCYVY 424 (529)
T ss_dssp -CCTTSCCEECTTCEEEEEC-TTSC--BCCTTSCEEEEEECTTCCCCBTTCHHHHHHHEETTEEEEEEEEEECTTSCEEE
T ss_pred -CccCCcccCCCCCEEEEEC-CCCC--CCCCCCccEEEEecCCcccccCCChHHHHHhhhcCCcccCceEEECCCccEEE
Confidence 3447899999999999999 6654 45567899999999999999999999999999999999999999999999999
Q ss_pred EeccCCeeEcCCCeeecchhHHHHHhcCcCcceEEEEecCCC--CeEEEEEEcChhhHHHHHHHCCCCCcHHHHhccHHH
Q 006115 512 IDRKKNLIKISQGEYVALEYLENVYCVAPIIEDIWVYGDSLK--SMLVAVVVPCEEDTKKWAYSNGHAGSFLELCSLVQL 589 (660)
Q Consensus 512 ~GR~~d~i~~~~G~~v~~~~iE~~l~~~p~V~~~~v~~~~~~--~~~~a~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 589 (660)
.||.||+||+ +|++|+|.+||++|.+||+|.+|+|++.... ..++|+|++..+.. .....
T Consensus 425 ~GR~dd~ik~-~G~~v~p~eIE~~l~~~p~V~~~~vv~~~~~~~~~~~a~vv~~~~~~-----------------~~~~~ 486 (529)
T 2v7b_A 425 AGRSDDMLKV-SGQYVSPVEVEMVLVQHDAVLEAAVVGVDHGGLVKTRAFVVLKREFA-----------------PSEIL 486 (529)
T ss_dssp EEEGGGCBC-----CBCHHHHHHHHTTSTTEEEEEEEEEEETTEEEEEEEEEECTTCC-----------------CCHHH
T ss_pred eCccCCeEEE-CCEEECHHHHHHHHHhCCCcceEEEEEecCCCceEEEEEEEecCCCC-----------------cchhH
Confidence 9999999997 8999999999999999999999999997322 36889998876420 01112
Q ss_pred HHHHHHHHHHHHHHCCCCCceeeeEEEEecCCCCCCCCccccccccchHHHHH
Q 006115 590 QNYILSELKNAAERNKLRGFEHIKGVILDPRPFDMERDLVTATLKKKRNKLLI 642 (660)
Q Consensus 590 ~~~~~~~l~~~~~~~~l~~~~~p~~i~~~~~~~~~~~~P~t~~GKv~R~~l~~ 642 (660)
.++|+++++ ..||.|++|+.+++++ .+|+|++||++|++|++
T Consensus 487 ----~~~l~~~l~-~~L~~~~~P~~i~~v~------~lP~t~~GKi~r~~L~~ 528 (529)
T 2v7b_A 487 ----AEELKAFVK-DRLAPHKYPRDIVFVD------DLPKTATGKIQRFKLRE 528 (529)
T ss_dssp ----HHHHHHHHH-TTSCTTTSCSEEEEES------CCCBCTTSCBCHHHHHC
T ss_pred ----HHHHHHHHH-hhcchhhCCeEEEEec------cCCCCCccchhHHhHhh
Confidence 234555554 7999999999999984 45999999999999986
No 19
>4gr5_A Non-ribosomal peptide synthetase; MBTH-like domain, adenylation domain, ligase, rossmann fold, binding; HET: APC TLA; 1.92A {Streptomyces lydicus} PDB: 4gr4_A
Probab=100.00 E-value=5.7e-72 Score=620.48 Aligned_cols=478 Identities=20% Similarity=0.194 Sum_probs=316.6
Q ss_pred CCCCcHHHHHHHHHHhCCCCCceeeeccccCCCCCceEEeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEeCChhhHHHHH
Q 006115 39 SDLNTAWDIFSMSVQKYPGNRMLGWRPFVDGKFGPYVWKTYKEVYEEVLQIVSALRASGAEPGCRVGIYGANCPQWVEAM 118 (660)
Q Consensus 39 ~~~~ti~~~l~~~a~~~pd~~a~~~~~~~~~~~~~~~~~Ty~el~~~~~~lA~~L~~~gv~~gd~V~l~~~n~~~~~~~~ 118 (660)
....++.++|+++|+++||++|+++. + +++||+||.++++++|++|++.|+++||+|+++++|++++++++
T Consensus 72 ~~~~~l~~~l~~~a~~~pd~~A~~~~----~-----~~~Ty~el~~~~~~lA~~L~~~Gv~~gd~V~i~~~n~~~~~~~~ 142 (570)
T 4gr5_A 72 PAGACVHELFEAQAARAPDAVALLHE----A-----DELTYGALNERANRLAHRLVGLGVAPGTLVGVHLERGFDMVVAL 142 (570)
T ss_dssp CCSCCHHHHHHHHHHHCTTSEEEEET----T-----EEEEHHHHHHHHHHHHHHHHHTTCCTTCEEEEECCSSHHHHHHH
T ss_pred CccCCHHHHHHHHHHHCCCCeEEECC----C-----CcEeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEeCCCHHHHHHH
Confidence 45679999999999999999999874 2 58999999999999999999999999999999999999999999
Q ss_pred HHHHhCCCeEeecCCCCChhhHHHHhhcccceEEEEccchhhhhhccccccccCccEEEEecCCcHHHHHHHhhCCceee
Q 006115 119 EACNALSLICVPLYDTLGPGAVNFILDHAEIDFVFVQDKKVKELLSPDCRSAQRLRVMVCFTSLTAEQKEMAVQTGIKPY 198 (660)
Q Consensus 119 lA~~~~G~~~v~i~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~ 198 (660)
|||+++|++++|++|.++.+++.++++.++++++|++......+. ....++..+...
T Consensus 143 lA~~~~G~~~vpl~~~~~~~~l~~~l~~~~~~~~i~~~~~~~~~~--------~~~~~~~~~~~~--------------- 199 (570)
T 4gr5_A 143 LAVLKAGGGYTMLDPQFPVERLALSLEDTGAPLLVTSRPLSGRLT--------GTTTLYVEDEAA--------------- 199 (570)
T ss_dssp HHHHHTTCEEEECCTTSCHHHHHHHHHHHTCSEEEECTTTTTSSC--------SSEEEECCC------------------
T ss_pred HHHHHHCCEEEEcCCCChHHHHHHHHHhcCCCEEEecchhhhccc--------CCcceeeecccc---------------
Confidence 999999999999999999999999999999999999986544321 111121111100
Q ss_pred eHHHHHhcCccCCccCCCCCCCCeEEEEecCCCCCCCceeeeccHhHHHHhhhcccccccccCCCCCCcEEEEecChhhH
Q 006115 199 SWDEFLHLGKVNEMEILPPQPFNICTIMYTSGTSGDPKGVVLTHETIATFVSGVDLFLDQFEDKMTVDDVYLSFLPLAHI 278 (660)
Q Consensus 199 ~~~~~~~~~~~~~~~~~~~~~~~~a~i~~TSGTTG~pK~v~~th~~l~~~~~~~~~~~~~~~~~~~~~d~~l~~~p~~~~ 278 (660)
.............++++++|+|||||||.||+|++||+++.+.+.. ...+ ++.++|++++++|++|.
T Consensus 200 -------~~~~~~~~~~~~~~~d~a~i~~TSGTTG~PKgV~~th~~l~~~~~~-~~~~-----~~~~~d~~l~~~p~~~~ 266 (570)
T 4gr5_A 200 -------SDAPAGNLATGVGPEDVACVMFTSGSTGRPKGVMSPHRALTGTYLG-QDYA-----GFGPDEVFLQCSPVSWD 266 (570)
T ss_dssp -----------CCCCCCCCCTTSEEEEECCSSCCSSCCCEEEEHHHHHHHHSS-CCSS-----CCSTTCEEEECSCTTSS
T ss_pred -------ccccccccCCCCCCCCeEEEEECCcCCCCCeEEEEecHHHHHHHHh-hhhc-----CCCCCCEEEEecCccHH
Confidence 0001112233457899999999999999999999999999877655 2333 68899999999999987
Q ss_pred HHHHHHHHHhhcCcEEEEecC---ChHHHHHHhhhhcCeEEEechHHHHHHHHHHHHHHHhhchHHHHHHHHHHHHHHHH
Q 006115 279 LDRVIEEYFFRRGASVGYYHG---DLNALRDDLMELKPTLLAGVPRVFEKIHEGIKKALEELRPLRRRIFDALYKYKLAW 355 (660)
Q Consensus 279 ~g~~~~~~~l~~G~~~v~~~~---~~~~~~~~i~~~~~t~l~~~p~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 355 (660)
.+...++.+++.|+++++.+. ++..+++.++++++|+++++|+++..|++....
T Consensus 267 ~~~~~~~~~l~~G~~~v~~~~~~~~~~~~~~~i~~~~vt~~~~~P~~~~~l~~~~~~----------------------- 323 (570)
T 4gr5_A 267 AFGLELFGALLFGARCVLQSGQNPDPLEIGELVARHGVTMLQLSASLFNFLVDEVPE----------------------- 323 (570)
T ss_dssp THHHHHHHHHTTTCEEEECSSSSCCHHHHHHHHHHHTCCEEEEEHHHHHHHHHHCGG-----------------------
T ss_pred HHHHHHHHHHhcCCEEEEcCCccCCHHHHHHHHHHcCCcEEEecHHHHHHHHhhchh-----------------------
Confidence 776677888999999999863 899999999999999999999999988653110
Q ss_pred HhcCCCCCCcchhHHHHHHHHHHHHhCCcEeEEEEccCCCCHHHHHHHHHhc-CCceeeecCCCCCCCceecccCCC---
Q 006115 356 MNMGYKQREASPLADLLAFRKVKARLGGRLRLVISGGAPLSTEVEEFLRVTC-CAFLVQGYGLTETCGPTTVCFPDE--- 431 (660)
Q Consensus 356 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~slr~v~~~G~~l~~~~~~~~~~~~-~~~v~~~YG~tE~~~~~~~~~~~~--- 431 (660)
. .++||.+++||+++++.+.+.+.+.+ ++++++.||+||++++++......
T Consensus 324 -----------------~--------~~~lr~~~~gG~~l~~~~~~~~~~~~~~~~l~~~YG~TE~~~~~~~~~~~~~~~ 378 (570)
T 4gr5_A 324 -----------------A--------FEGVRYAITGGEPASVPHVAKARRDHPALRLGNGYGPAESMGFTTHHAVVAGDL 378 (570)
T ss_dssp -----------------G--------GTTCSEEEEESSCCCHHHHHHHHHHCTTCEEEEEECCGGGCSCSEEEECCGGGT
T ss_pred -----------------h--------CCCceEEEEecccCCHHHHHHHHHhCCCcEEEEeechhhheeeeeeeeeccccc
Confidence 0 14899999999999999988888777 899999999999988776544322
Q ss_pred ccccCccCCCccCeeEEeeecCCCCCCCCCCCCCceEEEccCCcccccCCCchhhhhcc-cC--------CccccCceEE
Q 006115 432 MCMVGTAGPVSVYSELRLEEVPEMGYSPLDDPPCGEVCVRGKTLFSGYYKNPDLTRESI-ID--------GWFHTGDIGQ 502 (660)
Q Consensus 432 ~~~~~~~G~~~~~~~v~iv~~~~~~~~~~~~g~~GEi~v~g~~~~~gy~~~~~~~~~~f-~~--------g~~~TGDl~~ 502 (660)
.....++|+|+++++++|+| +++. +++.|+.|||+|+|++++.||+++++.+.+.| .+ |||+|||+|+
T Consensus 379 ~~~~~~iG~p~~~~~v~i~d-~~~~--~~~~G~~GEl~v~g~~v~~GY~~~~~~t~~~f~~~~~~~~~~~~w~~TGDlg~ 455 (570)
T 4gr5_A 379 SGTALPIGVPLAGKRAYVLD-DDLK--PAANGALGELYVAGAGLAHGYVSRPALTAERFVADPFAGPGGERMYRTGDLAR 455 (570)
T ss_dssp TSSSCCCBEECTTEEEEEEC-TTSC--BCCTTCEEEEEEEETTCCCEETTCHHHHHHHEEECTTCCSSCCEEEEEEEEEE
T ss_pred CCCccccceeeCCCEEEEEC-CCCC--CCCCCCcEEEEEeecccchhcCCCchhhhcccccCCCCCCCCCEEEeCCCeEE
Confidence 22335699999999999999 6554 55667899999999999999999999999998 33 6999999999
Q ss_pred ECCCCcEEEEeccCCeeEcCCCeeecchhHHHHHhcCcCcceEEEEecCCC---CeEEEEEEcChhhHHHHHHHCCCCCc
Q 006115 503 ILPNGVVKIIDRKKNLIKISQGEYVALEYLENVYCVAPIIEDIWVYGDSLK---SMLVAVVVPCEEDTKKWAYSNGHAGS 579 (660)
Q Consensus 503 ~~~~G~l~~~GR~~d~i~~~~G~~v~~~~iE~~l~~~p~V~~~~v~~~~~~---~~~~a~v~~~~~~~~~~~~~~~~~~~ 579 (660)
+|+||+|+++||+||+||+ +|++|+|.+||++|.+||.|.+|+|++.+++ +.++|+|+.......
T Consensus 456 ~d~dG~l~~~GR~~d~Ik~-~G~~v~p~eIE~~l~~~p~V~~a~Vv~~~~~~~~~~~~a~vv~~~~~~~----------- 523 (570)
T 4gr5_A 456 RRADGVLEYVGRADDQVKI-RGFRVEPGEVEARLVGHPAVRQAAVLAQDSRLGDKQLVAYVVAERADAP----------- 523 (570)
T ss_dssp ECTTSCEEEEEC--------------------------------------------------------------------
T ss_pred ECCCCeEEEEcccCCEEEE-CcEEeCHHHHHHHHhcCCCcceEEEEEeeCCCCCeEEEEEEEecCCCCC-----------
Confidence 9999999999999999997 8999999999999999999999999997654 378888887653200
Q ss_pred HHHHhccHHHHHHHHHHHHHHHHHCCCCCceeeeEEEEecCCCCCCCCccccccccchHHHHHH
Q 006115 580 FLELCSLVQLQNYILSELKNAAERNKLRGFEHIKGVILDPRPFDMERDLVTATLKKKRNKLLIY 643 (660)
Q Consensus 580 ~~~~~~~~~~~~~~~~~l~~~~~~~~l~~~~~p~~i~~~~~~~~~~~~P~t~~GKv~R~~l~~~ 643 (660)
...++|+++++ +.||.|++|+.++++ +.+|+|++||++|++|++.
T Consensus 524 ------------~~~~~l~~~l~-~~l~~~~~P~~i~~v------~~lP~t~~GKi~R~~L~~~ 568 (570)
T 4gr5_A 524 ------------PDAAELRRHVA-EALPAYMVPVECVPV------DELPRTPNGKLDRRALTGS 568 (570)
T ss_dssp ----------------------------------------------------------------
T ss_pred ------------cCHHHHHHHHH-hhCccccCCcEEEEc------ccCCCCCCcCcchHhhhcc
Confidence 01123444443 789999999999987 4569999999999999864
No 20
>4dg8_A PA1221; ANL superfamily, adenylation domain, peptidyl carrier protei ribosomal peptide synthetase, NRPS, valine adenylation, LIG; HET: AMP; 2.15A {Pseudomonas aeruginosa} PDB: 4dg9_A*
Probab=100.00 E-value=2.4e-71 Score=618.42 Aligned_cols=473 Identities=19% Similarity=0.146 Sum_probs=385.9
Q ss_pred CCcHHHHHHHHHHhCCCCCceeeeccccCCCCCceEEeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEeCChhhHHHHHHH
Q 006115 41 LNTAWDIFSMSVQKYPGNRMLGWRPFVDGKFGPYVWKTYKEVYEEVLQIVSALRASGAEPGCRVGIYGANCPQWVEAMEA 120 (660)
Q Consensus 41 ~~ti~~~l~~~a~~~pd~~a~~~~~~~~~~~~~~~~~Ty~el~~~~~~lA~~L~~~gv~~gd~V~l~~~n~~~~~~~~lA 120 (660)
..|+.++|+++|+++||++|+++. + +++||+||.++++++|++|++.|+++||+|+++++|++++++++||
T Consensus 26 ~~tl~~~~~~~a~~~Pd~~Av~~~---~------~~lTY~eL~~~a~~lA~~L~~~Gv~~g~~V~i~~~~s~~~vva~la 96 (620)
T 4dg8_A 26 HPTVVARFSEMAALHPHREAIRDR---F------GSVDYRQLLDSAEQLSDYLLEHYPQPGVCLGVYGEYSRESITCLLA 96 (620)
T ss_dssp SCCHHHHHHHHHHHCTTSEEEEET---T------EEEEHHHHHHHHHHHHHHHHHHCCSSCCEEEEESSSCHHHHHHHHH
T ss_pred CCCHHHHHHHHHHhCCCCeEEEcC---C------CcCcHHHHHHHHHHHHHHHHHcCCCCCCEEEEEeCCCHHHHHHHHH
Confidence 478999999999999999999875 3 5899999999999999999999999999999999999999999999
Q ss_pred HHhCCCeEeecCCCCChhhHHHHhhcccceEEEEccchhhhhhccccccccCccEEEEecCCcHHHHHHHhhCCceeeeH
Q 006115 121 CNALSLICVPLYDTLGPGAVNFILDHAEIDFVFVQDKKVKELLSPDCRSAQRLRVMVCFTSLTAEQKEMAVQTGIKPYSW 200 (660)
Q Consensus 121 ~~~~G~~~v~i~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~ 200 (660)
|+++|++++|++|.++.+++.++++.+++++++++........ ....+ ..
T Consensus 97 ilkaGa~~vpld~~~p~~~l~~il~~~~~~~vl~~~~~~~~~~--------~~~~~----------------------~~ 146 (620)
T 4dg8_A 97 ILLSGHHYLYIDLKQPAAWNAELCRQVDCRLILDCSTTPTPAN--------GLPCV----------------------PV 146 (620)
T ss_dssp HHHTTCEEEECCTTSCHHHHHHHHHHHTEEEEEECCSSCCCCT--------TSCEE----------------------EG
T ss_pred HHHhCCEEEeeCccChHHHHHHHHHhCCCcEEEecCccccccc--------CCcee----------------------ee
Confidence 9999999999999999999999999999999997665432110 00000 00
Q ss_pred HHHHhcCccCCccCCCCCCCCeEEEEecCCCCCCCceeeeccHhHHHHhhhcccccccccCCCCCCcEEEEecChhhHHH
Q 006115 201 DEFLHLGKVNEMEILPPQPFNICTIMYTSGTSGDPKGVVLTHETIATFVSGVDLFLDQFEDKMTVDDVYLSFLPLAHILD 280 (660)
Q Consensus 201 ~~~~~~~~~~~~~~~~~~~~~~a~i~~TSGTTG~pK~v~~th~~l~~~~~~~~~~~~~~~~~~~~~d~~l~~~p~~~~~g 280 (660)
.... ............++++++|+|||||||.||||+++|+++.+.+.. ...+ ++.+++++++..|++|..+
T Consensus 147 ~~~~--~~~~~~~~~~~~~~d~a~iiyTSGSTG~PKgV~~th~~l~~~~~~-~~~~-----~~~~~d~~l~~~p~~~~~~ 218 (620)
T 4dg8_A 147 RHLP--AAPASVARPCFAADQIAYINFSSGTTGRPKAIACTHAGITRLCLG-QSFL-----AFAPQMRFLVNSPLSFDAA 218 (620)
T ss_dssp GGCC--CCCCCSSCCCCCTTSEEEEEEEBSSSSSCEEEEEEHHHHHHHHSS-CGGG-----TTCTTCEEEECSCTTSTHH
T ss_pred ccCC--cCCccccCCCCCCCCeEEEEECCCccccCeEEEEchHHHHHHHHH-HHhh-----CCCCCCEEEEECccCHHHH
Confidence 0000 001111223346899999999999999999999999999887765 3334 7889999999999999999
Q ss_pred HHHHHHHhhcCcEEEEecC---ChHHHHHHhhhhcCeEEEechHHHHHHHHHHHHHHHhhchHHHHHHHHHHHHHHHHHh
Q 006115 281 RVIEEYFFRRGASVGYYHG---DLNALRDDLMELKPTLLAGVPRVFEKIHEGIKKALEELRPLRRRIFDALYKYKLAWMN 357 (660)
Q Consensus 281 ~~~~~~~l~~G~~~v~~~~---~~~~~~~~i~~~~~t~l~~~p~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 357 (660)
+..++.++..|+++++.+. ++..+++.++++++|+++++|+++..+.+...
T Consensus 219 ~~~~~~~l~~G~~~v~~~~~~~~~~~~~~~i~~~~vt~~~~~Ps~~~~l~~~~~-------------------------- 272 (620)
T 4dg8_A 219 TLEIWGALLNGGCCVLNDLGPLDPGVLRQLIGERGADSAWLTASLFNTLVDLDP-------------------------- 272 (620)
T ss_dssp HHHHHHHHTTTCEEEECCSSSCCHHHHHHHHHTTCCCEEEEEHHHHHHHHHHCG--------------------------
T ss_pred HHHHHHHHhcCCEEEeCccccCCHHHHHHHHHHhCCcEEEccHHHHHHHHhcCh--------------------------
Confidence 9888999999999999753 89999999999999999999999998864200
Q ss_pred cCCCCCCcchhHHHHHHHHHHHHhCCcEeEEEEccCCCCHHHHHHHHHhc-CCceeeecCCCCCCCceecccCCC---cc
Q 006115 358 MGYKQREASPLADLLAFRKVKARLGGRLRLVISGGAPLSTEVEEFLRVTC-CAFLVQGYGLTETCGPTTVCFPDE---MC 433 (660)
Q Consensus 358 ~~~~~~~~~~~~~~~~~~~~~~~~~~slr~v~~~G~~l~~~~~~~~~~~~-~~~v~~~YG~tE~~~~~~~~~~~~---~~ 433 (660)
.+ .++||.+++|||+++++..+.+.+.+ +++++|.||+||++.+++...... ..
T Consensus 273 --------------~~--------l~~lr~v~~gGe~l~~~~~~~~~~~~~~~~l~n~YG~TE~~~~~~~~~~~~~~~~~ 330 (620)
T 4dg8_A 273 --------------DC--------LGGLRQLLTGGDILSVPHVRRALLRHPRLHLVNGYGPTENTTFTCCHVVTDDDLEE 330 (620)
T ss_dssp --------------GG--------GTTCSEEEEESSCCCHHHHHHHHHHCTTCEEEEEECCGGGCSCSEEEECCTGGGGS
T ss_pred --------------hh--------CCCccEEEEEeCcCCHHHHHHHHHhCCCeEEEeeEchhhhhhheEEEeccccccCC
Confidence 00 14899999999999998887776655 899999999999998776543322 23
Q ss_pred ccCccCCCccCeeEEeeecCCCCCCCCCCCCCceEEEccCCcccccCCCchhhhhcccC--------CccccCceEEECC
Q 006115 434 MVGTAGPVSVYSELRLEEVPEMGYSPLDDPPCGEVCVRGKTLFSGYYKNPDLTRESIID--------GWFHTGDIGQILP 505 (660)
Q Consensus 434 ~~~~~G~~~~~~~v~iv~~~~~~~~~~~~g~~GEi~v~g~~~~~gy~~~~~~~~~~f~~--------g~~~TGDl~~~~~ 505 (660)
...++|+|+++++++|+| +++. ..++.|+.|||+|+|++++.||+++++.|.+.|.+ +||+|||+|++++
T Consensus 331 ~~~~iG~p~~~~~~~i~d-~~~~-~~~~~g~~GEl~i~G~~v~~GY~~~p~~t~~~f~~~p~~~~~~~~yrTGDl~~~~~ 408 (620)
T 4dg8_A 331 DDIPIGKAIAGTAVLLLD-EHGQ-EIAEPDRAGEIVAFGAGLAQGYRNDAARTRASFVELPYRGRLLRAYRTGDRARYDE 408 (620)
T ss_dssp SSCCCBEECTTEEEEEEC-TTSC-BCCSSSCCEEEEEEETTCCSEETTCHHHHHHHEEEEEETTEEEEEEEEEEEEEECT
T ss_pred CCCCceecccCcEEEEEC-ccCC-CCCCCCCceEEEEeccccccccCCChhhhhhhhccCCCCCCCceEEeCCCEEEECC
Confidence 346899999999999999 5554 33556789999999999999999999999999943 7999999999999
Q ss_pred CCcEEEEeccCCeeEcCCCeeecchhHHHHHhcCcCcceEEEEecCCCC--eEEEEEEcChhhHHHHHHHCCCCCcHHHH
Q 006115 506 NGVVKIIDRKKNLIKISQGEYVALEYLENVYCVAPIIEDIWVYGDSLKS--MLVAVVVPCEEDTKKWAYSNGHAGSFLEL 583 (660)
Q Consensus 506 ~G~l~~~GR~~d~i~~~~G~~v~~~~iE~~l~~~p~V~~~~v~~~~~~~--~~~a~v~~~~~~~~~~~~~~~~~~~~~~~ 583 (660)
||+|+++||.||+||+ +|++|+|.+||++|.+||+|.+|+|++.++.. .++++++...+. +.
T Consensus 409 dG~l~~~GR~dd~Ik~-~G~ri~~~eIE~~l~~~p~V~~a~Vv~~~~~~~~~lv~~~~~~~~~-------------~~-- 472 (620)
T 4dg8_A 409 QGRLRFIGRGDGQVKL-NGYRLDLPALEQRFRRQPGILDCALLVRERNGVKQLLCAWTGKADA-------------SP-- 472 (620)
T ss_dssp TSCEEEEECSSSEEEE-TTEEEEHHHHHHHHHTSTTEEEEEEEEEEETTEEEEEEEEEECTTC-------------CC--
T ss_pred CCeEEEEccCCCEEEE-CCEEcCHHHHHHHHHhCCCccEEEEEEEeCCCceEEEEEEecChHH-------------HH--
Confidence 9999999999999998 79999999999999999999999999876553 455555543221 00
Q ss_pred hccHHHHHHHHHHHHHHHHHCCCCCceeeeEEEEecCCCCCCCCccccccccchHHHHHHHHHHH
Q 006115 584 CSLVQLQNYILSELKNAAERNKLRGFEHIKGVILDPRPFDMERDLVTATLKKKRNKLLIYYQVEI 648 (660)
Q Consensus 584 ~~~~~~~~~~~~~l~~~~~~~~l~~~~~p~~i~~~~~~~~~~~~P~t~~GKv~R~~l~~~~~~~l 648 (660)
+ .+ +..||.|++|+.++++ +.+|+|++||++|++|++++.+.+
T Consensus 473 -------~----~l-----~~~Lp~y~~P~~~~~v------~~lP~t~~GKidR~~L~~~~~~~~ 515 (620)
T 4dg8_A 473 -------Q----AL-----LRQLPTWQRPHACVRV------EALPLTAHGKLDRAALLRRLEEPL 515 (620)
T ss_dssp -------H----HH-----HHHSCGGGSCSEEEEC------SSCCCC----CCHHHHHHHTCSCC
T ss_pred -------H----HH-----HHhChhhcCCcEEEEE------CcCCCCcccCHhHHHHhhcccccc
Confidence 1 11 2469999999999987 556999999999999998875433
No 21
>3rg2_A Enterobactin synthase component E (ENTE), 2,3-DIH dihydroxybenzoate synthetase, isochroismatase...; adenylate-forming enzymes, ANL superfamily; HET: SVS PNS; 3.10A {Escherichia coli}
Probab=100.00 E-value=7.8e-71 Score=616.78 Aligned_cols=501 Identities=18% Similarity=0.184 Sum_probs=412.0
Q ss_pred CCcHHHHHHHHHHhCCCCCceeeeccccCCCCCceEEeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEeCChhhHHHHHHH
Q 006115 41 LNTAWDIFSMSVQKYPGNRMLGWRPFVDGKFGPYVWKTYKEVYEEVLQIVSALRASGAEPGCRVGIYGANCPQWVEAMEA 120 (660)
Q Consensus 41 ~~ti~~~l~~~a~~~pd~~a~~~~~~~~~~~~~~~~~Ty~el~~~~~~lA~~L~~~gv~~gd~V~l~~~n~~~~~~~~lA 120 (660)
..++.++|.++|+ ||++|+++. + +++||+||.++++++|++|++.|+++||+|+++++|++++++++||
T Consensus 26 ~~~l~~~~~~~a~--pd~~Av~~~---~------~~lTY~eL~~~a~~lA~~L~~~Gv~~gd~V~l~~~~s~~~vva~lA 94 (617)
T 3rg2_A 26 DLPLTDILTRHAA--SDSIAVIDG---E------RQLSYRELNQAADNLACSLRRQGIKPGETALVQLGNVAELYITFFA 94 (617)
T ss_dssp CCCTTHHHHTTTT--CCSEEEEET---T------EEEEHHHHHHHHHHHHHHHHHTTCCTTCEEEEECCSSHHHHHHHHH
T ss_pred cCCHHHHHHHhhC--CCCeEEecC---C------ceEeHHHHHHHHHHHHHHHHHcCCCCCCEEEEECCCcHHHHHHHHH
Confidence 4789999999988 999999864 2 6899999999999999999999999999999999999999999999
Q ss_pred HHhCCCeEeecCCCCChhhHHHHhhcccceEEEEccchhh----hhhccccccccCccEEEEecCCcHHHHHHHhhCCce
Q 006115 121 CNALSLICVPLYDTLGPGAVNFILDHAEIDFVFVQDKKVK----ELLSPDCRSAQRLRVMVCFTSLTAEQKEMAVQTGIK 196 (660)
Q Consensus 121 ~~~~G~~~v~i~~~~~~~~l~~~l~~~~~~~vi~~~~~~~----~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~ 196 (660)
|+++|++++|++|.++.+++.++++.+++++++++..... ...............+...+....
T Consensus 95 ~l~aG~~~vpl~~~~~~~~l~~~l~~~~~~~vl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------------ 162 (617)
T 3rg2_A 95 LLKLGVAPVLALFSHQRSELNAYASQIEPALLIADRQHALFSGDDFLNTFVTEHSSIRVVQLLNDSGE------------ 162 (617)
T ss_dssp HHHHTCEEEEECTTCCHHHHHHHHHHHCCSEEEEETTSGGGSSSHHHHHHHHHSTTCCEEEEETCCST------------
T ss_pred HHhcCeEEccCCccccHHHHHHHHhhcCceEEEecccccccccHHHHHHHhhcCCccceeeecccccc------------
Confidence 9999999999999999999999999999999999876541 111111112234444444443221
Q ss_pred eeeHHHHHhcCccCCccCCCCCCCCeEEEEecCCCCCCCceeeeccHhHHHHhhhcccccccccCCCCCCcEEEEecChh
Q 006115 197 PYSWDEFLHLGKVNEMEILPPQPFNICTIMYTSGTSGDPKGVVLTHETIATFVSGVDLFLDQFEDKMTVDDVYLSFLPLA 276 (660)
Q Consensus 197 ~~~~~~~~~~~~~~~~~~~~~~~~~~a~i~~TSGTTG~pK~v~~th~~l~~~~~~~~~~~~~~~~~~~~~d~~l~~~p~~ 276 (660)
..+.+..... .......+..++++++++|||||||.||+|+++|+++++.+......+ ++.+++++++++|++
T Consensus 163 -~~~~~~~~~~-~~~~~~~~~~~~~~a~ii~TSGSTG~PKgV~~th~~~~~~~~~~~~~~-----~~~~~~~~l~~~p~~ 235 (617)
T 3rg2_A 163 -HNLQDAINHP-AEDFTATPSPADEVAYFQLSGGTTGTPKLIPRTHNDYYYSVRRSVEIC-----QFTQQTRYLCAIPAA 235 (617)
T ss_dssp -TBHHHHHHSC-CSSCCCCCCCTTSEEEEEECCCSSSSCCEEEEEHHHHHHHHHHHHHHH-----TCCTTCEEEECSCTT
T ss_pred -cchhhhhccc-ccccCCCCCCCCCeEEEEECCCcCCCCCEeehhHHHHHHHHHHHHHhc-----CCCCcceEEEeccch
Confidence 1233333322 122233455789999999999999999999999999999998887777 789999999999999
Q ss_pred hHHHHHH--HHHHhhcCcEEEEecC-ChHHHHHHhhhhcCeEEEechHHHHHHHHHHHHHHHhhchHHHHHHHHHHHHHH
Q 006115 277 HILDRVI--EEYFFRRGASVGYYHG-DLNALRDDLMELKPTLLAGVPRVFEKIHEGIKKALEELRPLRRRIFDALYKYKL 353 (660)
Q Consensus 277 ~~~g~~~--~~~~l~~G~~~v~~~~-~~~~~~~~i~~~~~t~l~~~p~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~ 353 (660)
|.+++.. ++.++..|+++++.+. ++..++..++++++|++.++|+++..+++........
T Consensus 236 ~~~~~~~~~~~~~l~~G~~~v~~~~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~----------------- 298 (617)
T 3rg2_A 236 HNYAMSSPGSLGVFLAGGTVVLAADPSATLCFPLIEKHQVNVTALVPPAVSLWLQALIEGESR----------------- 298 (617)
T ss_dssp SHHHHHSSHHHHHHHHTCEEEECSSCCHHHHHHHHHHTTCCEEEECHHHHHHHHHHHHTTCCT-----------------
T ss_pred hhhhhhHHHHHHHHHcCCEEEEeCCCCHHHHHHHHHHhCCcEEEcchHHHHHHHHhhhccccc-----------------
Confidence 9999875 6788999999999876 8999999999999999999999999887643221000
Q ss_pred HHHhcCCCCCCcchhHHHHHHHHHHHHhCCcEeEEEEccCCCCHHHHHHHHHhcCCceeeecCCCCCCCceecccCCCcc
Q 006115 354 AWMNMGYKQREASPLADLLAFRKVKARLGGRLRLVISGGAPLSTEVEEFLRVTCCAFLVQGYGLTETCGPTTVCFPDEMC 433 (660)
Q Consensus 354 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~slr~v~~~G~~l~~~~~~~~~~~~~~~v~~~YG~tE~~~~~~~~~~~~~~ 433 (660)
...++||.+++||+++++++.+.+.+.+++++++.||+||++..++........
T Consensus 299 --------------------------~~l~~lr~i~~gGe~l~~~~~~~~~~~~~~~~~~~YG~tE~~~~~~~~~~~~~~ 352 (617)
T 3rg2_A 299 --------------------------AQLASLKLLQVGGARLSATLAARIPAEIGCQLQQVFGMAEGLVNYTRLDDSAEK 352 (617)
T ss_dssp --------------------------TTTTTCCEEEEESSCCCHHHHHHHHHHTCSEEEEEEEETTEEEEECCTTSCHHH
T ss_pred --------------------------ccCCCccEEEEcCCcCCHHHHHHHHHHhCCcEEEEeccCcceeecccCCCcccc
Confidence 011489999999999999999999998999999999999998665544333333
Q ss_pred ccCccCCCc-cCeeEEeeecCCCCCCCCCCCCCceEEEccCCcccccCCCchhhhhcc-cCCccccCceEEECCCCcEEE
Q 006115 434 MVGTAGPVS-VYSELRLEEVPEMGYSPLDDPPCGEVCVRGKTLFSGYYKNPDLTRESI-IDGWFHTGDIGQILPNGVVKI 511 (660)
Q Consensus 434 ~~~~~G~~~-~~~~v~iv~~~~~~~~~~~~g~~GEi~v~g~~~~~gy~~~~~~~~~~f-~~g~~~TGDl~~~~~~G~l~~ 511 (660)
...++|.|+ ++++++|+| +++. +++.|+.|||+|+|+++++||+++++.|.+.| .++||+|||+|++++||.|++
T Consensus 353 ~~~~~G~p~~~~~~~~i~d-~~~~--~~p~G~~GEl~i~G~~v~~GY~~~p~~t~~~f~~~~~yrTGDl~~~~~dG~l~~ 429 (617)
T 3rg2_A 353 IIHTQGYPMCPDDEVWVAD-AEGN--PLPQGEVGRLMTRGPYTFRGYYKSPQHNASAFDANGFYCSGDLISIDPEGYITV 429 (617)
T ss_dssp HHHCCCEESCTTCEEEEEC-TTSC--BCCTTCCEEEEEECSSSCSCCTTCHHHHHHHBCTTSCEEEEEEEEECTTSCEEE
T ss_pred cccCCCccCCCCceEEEEC-CCCC--CCCCCCceEEEecCccccchhcCChhhhhhccCCCCceecCceEEEcCCceEEE
Confidence 346789887 788999999 6554 55667899999999999999999999999999 799999999999999999999
Q ss_pred EeccCCeeEcCCCeeecchhHHHHHhcCcCcceEEEEecCCC---CeEEEEEEcChhhHHHHHHHCCCCCcHHHHhccHH
Q 006115 512 IDRKKNLIKISQGEYVALEYLENVYCVAPIIEDIWVYGDSLK---SMLVAVVVPCEEDTKKWAYSNGHAGSFLELCSLVQ 588 (660)
Q Consensus 512 ~GR~~d~i~~~~G~~v~~~~iE~~l~~~p~V~~~~v~~~~~~---~~~~a~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 588 (660)
+||.||+||+ +|++|+|.+||++|.+||+|.+|+|++.+++ ..++|+++..+.. +..
T Consensus 430 ~GR~dd~iki-~G~ri~~~eIE~~l~~~p~V~~a~vv~~~~~~~~~~~~a~vv~~~~~------------------~~~- 489 (617)
T 3rg2_A 430 QGREKDQINR-GGEKIAAEEIENLLLRHPAVIYAALVSMEDELMGEKSCAYLVVKEPL------------------RAV- 489 (617)
T ss_dssp EEECSSEEEE-TTEEEEHHHHHHHHTTSTTEEEEEEEEEEETTTEEEEEEEEEESSCC------------------CHH-
T ss_pred EeecCCEEEE-CCEEeCHHHHHHHHHhCCCeeEEEEEeccCcccCeeEEEEEEeCCCC------------------CHH-
Confidence 9999999997 7999999999999999999999999986644 3788888877532 112
Q ss_pred HHHHHHHHHHHHHHHCCCCCceeeeEEEEecCCCCCCCCccccccccchHHHHHHHHHHHHH
Q 006115 589 LQNYILSELKNAAERNKLRGFEHIKGVILDPRPFDMERDLVTATLKKKRNKLLIYYQVEIDQ 650 (660)
Q Consensus 589 ~~~~~~~~l~~~~~~~~l~~~~~p~~i~~~~~~~~~~~~P~t~~GKv~R~~l~~~~~~~l~~ 650 (660)
.+++++++..||.|++|+.++++ +.+|+|++||++|++|++.+......
T Consensus 490 -------~l~~~l~~~~lp~~~vP~~~~~v------~~lP~t~~GKidR~~L~~~~~~~~~~ 538 (617)
T 3rg2_A 490 -------QVRRFLREQGIAEFKLPDRVECV------DSLPLTAVGKVDKKQLRQWLASRASA 538 (617)
T ss_dssp -------HHHHHHHTTTCCGGGSCSEEEEC------SCCCBCTTSSBCHHHHHHHHHHHHHH
T ss_pred -------HHHHHHHhCCCccccCCcEEEEe------cccCCCCCCCCcHHHHHHHHhccccc
Confidence 23344433479999999999997 55699999999999999998765443
No 22
>3l8c_A D-alanine--poly(phosphoribitol) ligase subunit 1; structural genomics, DLTA, ATP-binding, cytoplasm, nucleotide-binding; 2.41A {Streptococcus pyogenes serotype M6} PDB: 3lgx_A*
Probab=100.00 E-value=5.6e-71 Score=606.95 Aligned_cols=492 Identities=16% Similarity=0.138 Sum_probs=394.2
Q ss_pred CCcHHHHHHHHHHhCCCCCceeeeccccCCCCCceEEeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEeCChhhHHHHHHH
Q 006115 41 LNTAWDIFSMSVQKYPGNRMLGWRPFVDGKFGPYVWKTYKEVYEEVLQIVSALRASGAEPGCRVGIYGANCPQWVEAMEA 120 (660)
Q Consensus 41 ~~ti~~~l~~~a~~~pd~~a~~~~~~~~~~~~~~~~~Ty~el~~~~~~lA~~L~~~gv~~gd~V~l~~~n~~~~~~~~lA 120 (660)
+.++.+.|+++|+++||++|+.+. + +++||+||.++++++|++|.+.|+++||+|+++++|++++++++||
T Consensus 3 ~~~l~~~l~~~a~~~p~~~a~~~~----~-----~~~Ty~el~~~~~~lA~~L~~~g~~~gd~V~i~~~n~~~~~~~~lA 73 (521)
T 3l8c_A 3 LKDMIDSIEQFAQTQADFPVYDCL----G-----ERRTYGQLKRDSDSIAAFIDSLALLAKSPVLVFGAQTYDMLATFVA 73 (521)
T ss_dssp CCCHHHHHHHHHHHSTTSEEEEET----T-----EEEEHHHHHHHHHHHHHHHHHTCCCTTCCEEEEECSSHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHCCCCcceecC----C-----CeecHHHHHHHHHHHHHHHHHcCCCCCCEEEEEeCCCHHHHHHHHH
Confidence 578999999999999999999874 3 6899999999999999999999999999999999999999999999
Q ss_pred HHhCCCeEeecCCCCChhhHHHHhhcccceEEEEccchhhhhhccccccccCccEEEEecCCcHHHHHHHhhCCceeeeH
Q 006115 121 CNALSLICVPLYDTLGPGAVNFILDHAEIDFVFVQDKKVKELLSPDCRSAQRLRVMVCFTSLTAEQKEMAVQTGIKPYSW 200 (660)
Q Consensus 121 ~~~~G~~~v~i~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~ 200 (660)
|+++|++++|++|.++.+++.++++.++++++|++++....+. .. . ...+
T Consensus 74 ~~~~G~v~vpl~~~~~~~~l~~il~~~~~~~ii~~~~~~~~~~--------~~-~---------------------~~~~ 123 (521)
T 3l8c_A 74 LTKSGHAYIPVDVHSAPERILAIIEIAKPSLIIAIEEFPLTIE--------GI-S---------------------LVSL 123 (521)
T ss_dssp HHHTTCCEEEEETTSCHHHHHHHHHHSCCSEEEESSCCCSCCT--------TS-E---------------------EEEH
T ss_pred HHHhCCEEEecCccccHHHHHHHHHhCCCCEEEecCccccccc--------cC-c---------------------ccch
Confidence 9999999999999999999999999999999999876432211 11 1 1122
Q ss_pred HHHHhcC--ccCCccCCCCCCCCeEEEEecCCCCCCCceeeeccHhHHHHhhhcccccccccCCCCCCcEEEEecChhhH
Q 006115 201 DEFLHLG--KVNEMEILPPQPFNICTIMYTSGTSGDPKGVVLTHETIATFVSGVDLFLDQFEDKMTVDDVYLSFLPLAHI 278 (660)
Q Consensus 201 ~~~~~~~--~~~~~~~~~~~~~~~a~i~~TSGTTG~pK~v~~th~~l~~~~~~~~~~~~~~~~~~~~~d~~l~~~p~~~~ 278 (660)
.++.... ...........++++++|+|||||||.||+|++||+++++.+....... ..++..++++++..|++|.
T Consensus 124 ~~~~~~~~~~~~~~~~~~~~~~d~a~i~~TSGTTG~PKgV~~sh~~l~~~~~~~~~~~---~~~~~~~~~~l~~~~~~~~ 200 (521)
T 3l8c_A 124 SEIESAKLAEMPYERTHSVKGDDNYYIIFTSGTTGQPKGVQISHDNLLSFTNWMIEDA---AFDVPKQPQMLAQPPYSFD 200 (521)
T ss_dssp HHHHHHHHHTCCCCCSSCCCTTSEEEEEECCC---CCCEEEEEHHHHHHHHHHHHHCT---TTCCCSSCEEECCSCTTSG
T ss_pred hhhhhcccccCCcccCCCCCCCCcEEEEEcCCCCCCCCEEEEehHHHHHHHHHHhhcc---ccCCCCCCeEEecCCccHH
Confidence 2221111 0111223345789999999999999999999999999998877654431 1267889999999999999
Q ss_pred HHHHHHHHHhhcCcEEEEecC----ChHHHHHHhhhhcCeEEEechHHHHHHHHHHHHHHHhhchHHHHHHHHHHHHHHH
Q 006115 279 LDRVIEEYFFRRGASVGYYHG----DLNALRDDLMELKPTLLAGVPRVFEKIHEGIKKALEELRPLRRRIFDALYKYKLA 354 (660)
Q Consensus 279 ~g~~~~~~~l~~G~~~v~~~~----~~~~~~~~i~~~~~t~l~~~p~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 354 (660)
.++...+.++..|+++++.+. ++..+++.+.++++|++.++|+++..+.....
T Consensus 201 ~~~~~~~~~l~~G~~~~~~~~~~~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~----------------------- 257 (521)
T 3l8c_A 201 LSVMYWAPTLALGGTLFALPKELVADFKQLFTTIAQLPVGIWTSTPSFADMAMLSDD----------------------- 257 (521)
T ss_dssp GGHHHHHHHHHTTCEEEECCGGGTTCHHHHHHHHHHSCCSEEEECHHHHHHHHTSTT-----------------------
T ss_pred HHHHHHHHHHhcCCEEEEcCHHHhhCHHHHHHHHHHcCCcEEEeCCCHHHHHhhhhc-----------------------
Confidence 888778888999999998864 88999999999999999999999987653210
Q ss_pred HHhcCCCCCCcchhHHHHHHHHHHHHhCCcEeEEEEccCCCCHHHHHHHHHhc-CCceeeecCCCCCCCceecccCCC--
Q 006115 355 WMNMGYKQREASPLADLLAFRKVKARLGGRLRLVISGGAPLSTEVEEFLRVTC-CAFLVQGYGLTETCGPTTVCFPDE-- 431 (660)
Q Consensus 355 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~slr~v~~~G~~l~~~~~~~~~~~~-~~~v~~~YG~tE~~~~~~~~~~~~-- 431 (660)
... ...+++|.+++||+++++++.+.+.+.+ ++++++.||+||+++.++......
T Consensus 258 --------------~~~--------~~~~~lr~~~~gG~~l~~~~~~~~~~~~~~~~i~~~YG~TE~~~~~~~~~~~~~~ 315 (521)
T 3l8c_A 258 --------------FCQ--------AKMPALTHFYFDGEELTVSTARKLFERFPSAKIINAYGPTEATVALSAIEITREM 315 (521)
T ss_dssp --------------CST--------TTCTTCCEEEECSSCCCHHHHHHHHHHCTTCEEEEEECCGGGSSCSEEEEECHHH
T ss_pred --------------ccc--------ccCccceEEEEecccCCHHHHHHHHHHCCCceEEeCcCccHHhhhhceeeccccc
Confidence 000 0114899999999999999999998888 899999999999998776544322
Q ss_pred --ccccCccCCCccCeeEEeeecCCCCCCCCCCCCCceEEEccCCcccccCCCchhhhhcc----cCCccccCceEEECC
Q 006115 432 --MCMVGTAGPVSVYSELRLEEVPEMGYSPLDDPPCGEVCVRGKTLFSGYYKNPDLTRESI----IDGWFHTGDIGQILP 505 (660)
Q Consensus 432 --~~~~~~~G~~~~~~~v~iv~~~~~~~~~~~~g~~GEi~v~g~~~~~gy~~~~~~~~~~f----~~g~~~TGDl~~~~~ 505 (660)
.....++|+|+++++++|+| +++. +++.|+.|||+|+||+++.||+++++.+.+.| .+|||+|||+|++|+
T Consensus 316 ~~~~~~~~vG~p~~~~~~~i~d-~~g~--~~~~g~~GEl~v~g~~v~~GY~~~~~~t~~~f~~~~~~~~~~TGDlg~~d~ 392 (521)
T 3l8c_A 316 VDNYTRLPIGYPKPDSPTYIID-EDGK--ELSSGEQGEIIVTGPAVSKGYLNNPEKTAEAFFTFKGQPAYHTGDIGSLTE 392 (521)
T ss_dssp HHHCSSCEEEEECTTSCEEEEC-TTSC--BCCTTCCEEEEEESTTSCSCBTTCHHHHHHHEEEETTEEEEEEEEEEEECS
T ss_pred ccCCCccccccccCCCEEEEEC-CCcC--CCCCCCceEEEecccccChhhcCCchHhhccCcCCCCceeeeCCCEEEEeC
Confidence 12336799999999999999 6554 45567899999999999999999999999988 357999999999999
Q ss_pred CCcEEEEeccCCeeEcCCCeeecchhHHHHHhcCcCcceEEEEecCCC----CeEEEEEEcChhhHHHHHHHCCCCCcHH
Q 006115 506 NGVVKIIDRKKNLIKISQGEYVALEYLENVYCVAPIIEDIWVYGDSLK----SMLVAVVVPCEEDTKKWAYSNGHAGSFL 581 (660)
Q Consensus 506 ~G~l~~~GR~~d~i~~~~G~~v~~~~iE~~l~~~p~V~~~~v~~~~~~----~~~~a~v~~~~~~~~~~~~~~~~~~~~~ 581 (660)
+|++++.||.||+|++ +|++|+|.+||++|.+||.|.+|+|++..+. +.++|+|+++++....
T Consensus 393 dG~l~~~GR~~d~i~~-~G~~v~p~eIE~~l~~~p~V~~a~vv~~~~~~~~~~~~~a~vv~~~~~~~~------------ 459 (521)
T 3l8c_A 393 DNILLYGGRLDFQIKY-AGYRIELEDVSQQLNQSPMVASAVAVPRYNKEHKVQNLLAYIVVKDGVKER------------ 459 (521)
T ss_dssp SSCEEEEEEGGGBCC------CBHHHHHHHHHTSTTEEEEEEECCCSSSCC---CEEEEEECTTSGGG------------
T ss_pred CCeEEEeCcccceEeE-CCEEeCHHHHHHHHHcCCCcceEEEEEeecCCCCceEEEEEEEecCccccc------------
Confidence 9999999999999997 7999999999999999999999999986533 3688999988753100
Q ss_pred HHhccHHHHHHHHHHHHHHHHHCCCCCceeeeEEEEecCCCCCCCCccccccccchHHHHHHHHHH
Q 006115 582 ELCSLVQLQNYILSELKNAAERNKLRGFEHIKGVILDPRPFDMERDLVTATLKKKRNKLLIYYQVE 647 (660)
Q Consensus 582 ~~~~~~~~~~~~~~~l~~~~~~~~l~~~~~p~~i~~~~~~~~~~~~P~t~~GKv~R~~l~~~~~~~ 647 (660)
.+. ...+.+.|+++++ .+||.|++|+.|+++ +.+|+|++||++|++|+++++++
T Consensus 460 ---~~~--~~~~~~~l~~~l~-~~l~~~~~P~~i~~v------~~lP~t~~GKidr~~L~~~~~~~ 513 (521)
T 3l8c_A 460 ---FDR--ELELTKAIKASVK-DHMMSYMMPSKFLYR------DSLPLTPNGKIDIKTLINEVNNR 513 (521)
T ss_dssp ---CSS--HHHHHHHHHHHSG-GGSCGGGSCSEEEEC------SSCCBCTTSSBCHHHHHHHTC--
T ss_pred ---ccc--chhhHHHHHHHHH-hhCccccCCeEEEEe------cccCCCCCcCccHHHHhhhhhcC
Confidence 000 1123455666664 789999999999987 45699999999999999998654
No 23
>1amu_A GRSA, gramicidin synthetase 1; peptide synthetase, adenylate forming; HET: PHE AMP; 1.90A {Brevibacillus brevis} SCOP: e.23.1.1
Probab=100.00 E-value=2e-70 Score=605.89 Aligned_cols=474 Identities=20% Similarity=0.229 Sum_probs=389.9
Q ss_pred CCcHHHHHHHHHHhCCCCCceeeeccccCCCCCceEEeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEeCChhhHHHHHHH
Q 006115 41 LNTAWDIFSMSVQKYPGNRMLGWRPFVDGKFGPYVWKTYKEVYEEVLQIVSALRASGAEPGCRVGIYGANCPQWVEAMEA 120 (660)
Q Consensus 41 ~~ti~~~l~~~a~~~pd~~a~~~~~~~~~~~~~~~~~Ty~el~~~~~~lA~~L~~~gv~~gd~V~l~~~n~~~~~~~~lA 120 (660)
..++.++|.++++++||++|+++. + +++||+||.++++++|++|.+.|+++||+|+++++|++++++++||
T Consensus 38 ~~~l~~~l~~~a~~~p~~~Al~~~----~-----~~~Ty~eL~~~~~~lA~~L~~~Gv~~gd~V~i~~~n~~e~~~~~lA 108 (563)
T 1amu_A 38 DKTIHQLFEEQVSKRPNNVAIVCE----N-----EQLTYHELNVKANQLARIFIEKGIGKDTLVGIMMEKSIDLFIGILA 108 (563)
T ss_dssp TCCHHHHHHHHHHHCTTSEEEEET----T-----EEEEHHHHHHHHHHHHHHHHHTTCCTTCEEEEECCSSHHHHHHHHH
T ss_pred CCcHHHHHHHHHHHCCCCeEEEeC----C-----ceecHHHHHHHHHHHHHHHHHcCCCCCCEEEEEeCCCHHHHHHHHH
Confidence 478999999999999999999864 2 6899999999999999999999999999999999999999999999
Q ss_pred HHhCCCeEeecCCCCChhhHHHHhhcccceEEEEccchhhhhhccccccccCccEEEEecCCcHHHHHHHhhCCceeeeH
Q 006115 121 CNALSLICVPLYDTLGPGAVNFILDHAEIDFVFVQDKKVKELLSPDCRSAQRLRVMVCFTSLTAEQKEMAVQTGIKPYSW 200 (660)
Q Consensus 121 ~~~~G~~~v~i~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~ 200 (660)
|+++|++++|++|.++.+++.++++.++++++|++......+.... ....+..++...
T Consensus 109 ~~~~Gav~vpl~~~~~~~~l~~il~~~~~~~li~~~~~~~~~~~~~-----~~~~~~~~~~~~----------------- 166 (563)
T 1amu_A 109 VLKAGGAYVPIDIEYPKERIQYILDDSQARMLLTQKHLVHLIHNIQ-----FNGQVEIFEEDT----------------- 166 (563)
T ss_dssp HHHTTCEEEECCTTSCHHHHHHHHHHHTCSEEEECGGGHHHHTTSC-----CCSEEEECCCST-----------------
T ss_pred HHHhCCEEEEeCCCCcHHHHHHHHHhcCCCEEEEcCchhhhhhhcc-----ccCceeeecchh-----------------
Confidence 9999999999999999999999999999999999987654432211 111222222110
Q ss_pred HHHHhcCccCCccCCCCCCCCeEEEEecCCCCCCCceeeeccHhHHHHhhhcccccccccCCCCCCcEEEEecChhhHHH
Q 006115 201 DEFLHLGKVNEMEILPPQPFNICTIMYTSGTSGDPKGVVLTHETIATFVSGVDLFLDQFEDKMTVDDVYLSFLPLAHILD 280 (660)
Q Consensus 201 ~~~~~~~~~~~~~~~~~~~~~~a~i~~TSGTTG~pK~v~~th~~l~~~~~~~~~~~~~~~~~~~~~d~~l~~~p~~~~~g 280 (660)
+ ... .......+..++++++|+|||||||.||||++||+++.+.+......+ ++.++|+++++.|++|..+
T Consensus 167 --~-~~~-~~~~~~~~~~~~d~a~i~~TSGTTG~PKgV~~th~~l~~~~~~~~~~~-----~~~~~d~~l~~~p~~~~~~ 237 (563)
T 1amu_A 167 --I-KIR-EGTNLHVPSKSTDLAYVIYTSGTTGNPKGTMLEHKGISNLKVFFENSL-----NVTEKDRIGQFASISFDAS 237 (563)
T ss_dssp --T-TTS-CCSCCCCCCCTTSEEEEEEEC-----CEEEEEESHHHHHHHHHHHHTS-----CCCTTCEEEECSCTTSTHH
T ss_pred --h-ccc-cCccCCCCCCCCCeEEEEECCCCCCCCcEEEEehHHHHHHHHHHHHhc-----CCCCCCEEEEeCCccHHHH
Confidence 0 000 111112345678999999999999999999999999998887776666 7889999999999999999
Q ss_pred HHHHHHHhhcCcEEEEecC----ChHHHHHHhhhhcCeEEEechHHHHHHHHHHHHHHHhhchHHHHHHHHHHHHHHHHH
Q 006115 281 RVIEEYFFRRGASVGYYHG----DLNALRDDLMELKPTLLAGVPRVFEKIHEGIKKALEELRPLRRRIFDALYKYKLAWM 356 (660)
Q Consensus 281 ~~~~~~~l~~G~~~v~~~~----~~~~~~~~i~~~~~t~l~~~p~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 356 (660)
+..++.+++.|+++++.+. ++..+++.++++++|+++++|+++..+...
T Consensus 238 ~~~~~~~l~~G~~~v~~~~~~~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~--------------------------- 290 (563)
T 1amu_A 238 VWEMFMALLTGASLYIILKDTINDFVKFEQYINQKEITVITLPPTYVVHLDPE--------------------------- 290 (563)
T ss_dssp HHHHHHHHTTTCEEEECCHHHHTCHHHHHHHHHHTTCCEEEECHHHHTTSCTT---------------------------
T ss_pred HHHHHHHHHCCCEEEEcChHhhcCHHHHHHHHHHcCCcEEEeCHHHHHHHHhc---------------------------
Confidence 8878889999999998864 889999999999999999999998765310
Q ss_pred hcCCCCCCcchhHHHHHHHHHHHHhCCcEeEEEEccCCCCHHHHHHHHHhcCCceeeecCCCCCCCceecccCCC--ccc
Q 006115 357 NMGYKQREASPLADLLAFRKVKARLGGRLRLVISGGAPLSTEVEEFLRVTCCAFLVQGYGLTETCGPTTVCFPDE--MCM 434 (660)
Q Consensus 357 ~~~~~~~~~~~~~~~~~~~~~~~~~~~slr~v~~~G~~l~~~~~~~~~~~~~~~v~~~YG~tE~~~~~~~~~~~~--~~~ 434 (660)
..+++|.+++||+++++++.+.+.+ .+++++.||+||++..++...... ...
T Consensus 291 ------------------------~~~~lr~~~~gG~~l~~~~~~~~~~--~~~~~~~YG~TE~~~~~~~~~~~~~~~~~ 344 (563)
T 1amu_A 291 ------------------------RILSIQTLITAGSATSPSLVNKWKE--KVTYINAYGPTETTICATTWVATKETIGH 344 (563)
T ss_dssp ------------------------TCCSCSEEEEESSCCCHHHHHHHTT--TSEEEEEECCGGGSSCSEEEECCSSCCCS
T ss_pred ------------------------ccccccEEEEEEecCCHHHHHHHHh--CCeEEEEECcCHHhHhheeeecccccCCC
Confidence 0148999999999999999999876 478999999999998766544322 223
Q ss_pred cCccCCCccCeeEEeeecCCCCCCCCCCCCCceEEEccCCcccccCCCchhhhhccc-------CCccccCceEEECCCC
Q 006115 435 VGTAGPVSVYSELRLEEVPEMGYSPLDDPPCGEVCVRGKTLFSGYYKNPDLTRESII-------DGWFHTGDIGQILPNG 507 (660)
Q Consensus 435 ~~~~G~~~~~~~v~iv~~~~~~~~~~~~g~~GEi~v~g~~~~~gy~~~~~~~~~~f~-------~g~~~TGDl~~~~~~G 507 (660)
..++|+|+++++++|+| +++. +++.|+.|||+|+|++++.||+++++.|.+.|. ++||+|||+|++|+||
T Consensus 345 ~~~vG~p~~~~~v~i~d-~~~~--~~~~g~~GEl~v~g~~v~~GY~~~pe~t~~~f~~~~~~~g~~w~~TGDlg~~d~dG 421 (563)
T 1amu_A 345 SVPIGAPIQNTQIYIVD-ENLQ--LKSVGEAGELCIGGEGLARGYWKRPELTSQKFVDNPFVPGEKLYKTGDQARWLSDG 421 (563)
T ss_dssp SCCCBEECTTEEEEEEC-TTSC--BCCTTCEEEEEEEETTCCCEETTCHHHHHHHEEECSSSTTSEEEEEEEEEEECTTS
T ss_pred CCcccceeCCCEEEEEC-CCcC--CCCCCCcEEEEEechhhChhhCCCchhhhhhcccCCCCCCCEEEecCCEEEEcCCC
Confidence 46899999999999999 6554 455678999999999999999999999999984 2599999999999999
Q ss_pred cEEEEeccCCeeEcCCCeeecchhHHHHHhcCcCcceEEEEecCCC---CeEEEEEEcChhhHHHHHHHCCCCCcHHHHh
Q 006115 508 VVKIIDRKKNLIKISQGEYVALEYLENVYCVAPIIEDIWVYGDSLK---SMLVAVVVPCEEDTKKWAYSNGHAGSFLELC 584 (660)
Q Consensus 508 ~l~~~GR~~d~i~~~~G~~v~~~~iE~~l~~~p~V~~~~v~~~~~~---~~~~a~v~~~~~~~~~~~~~~~~~~~~~~~~ 584 (660)
+|+++||.||+||+ +|++|+|.+||++|.+||+|.+|+|++.++. ..++|+|++....
T Consensus 422 ~l~i~GR~~d~Ik~-~G~~V~p~eIE~~l~~~p~V~~a~Vv~~~~~~~~~~~~a~vv~~~~~------------------ 482 (563)
T 1amu_A 422 NIEYLGRIDNQVKI-RGHRVELEEVESILLKHMYISETAVSVHKDHQEQPYLCAYFVSEKHI------------------ 482 (563)
T ss_dssp CEEEEEEGGGEEEE-TTEEEEHHHHHHHHTTSTTEEEEEEEEEECTTSCEEEEEEEEESSCC------------------
T ss_pred eEEEeccccCEEEE-CCEEeCHHHHHHHHHhCCCcceEEEEEeecCCCCeEEEEEEEeCCCC------------------
Confidence 99999999999997 8999999999999999999999999987654 3688888876421
Q ss_pred ccHHHHHHHHHHHHHHHHHCCCCCceeeeEEEEecCCCCCCCCccccccccchHHHHHHH
Q 006115 585 SLVQLQNYILSELKNAAERNKLRGFEHIKGVILDPRPFDMERDLVTATLKKKRNKLLIYY 644 (660)
Q Consensus 585 ~~~~~~~~~~~~l~~~~~~~~l~~~~~p~~i~~~~~~~~~~~~P~t~~GKv~R~~l~~~~ 644 (660)
+. ++|+++++ ..||.|++|+.|+++ +.+|+|++||++|++|++.+
T Consensus 483 ~~--------~~l~~~l~-~~L~~y~~P~~i~~v------~~lP~t~~GKi~r~~L~~~~ 527 (563)
T 1amu_A 483 PL--------EQLRQFSS-EELPTYMIPSYFIQL------DKMPLTSNGKIDRKQLPEPD 527 (563)
T ss_dssp CH--------HHHHHHHH-HHSCGGGSCSEEEEC------SSCCBCTTSSBCGGGSCCCC
T ss_pred CH--------HHHHHHHH-hhCchhhCCcEEEEe------cccCCCCCcChhHHhcCCcc
Confidence 11 22334443 679999999999997 45699999999999998754
No 24
>3tsy_A Fusion protein 4-coumarate--COA ligase 1, resvera synthase; transferase; 3.10A {Arabidospis thaliana}
Probab=100.00 E-value=5.8e-71 Score=649.54 Aligned_cols=541 Identities=24% Similarity=0.313 Sum_probs=345.7
Q ss_pred CCCCCCCCCceeccccCCCCCCCCCCCCcHHHHHHHHHHhCCCCCceeeeccccCCCCCceEEeHHHHHHHHHHHHHHHH
Q 006115 15 KDGKPSVGPVYRNLLASNGFPSVDSDLNTAWDIFSMSVQKYPGNRMLGWRPFVDGKFGPYVWKTYKEVYEEVLQIVSALR 94 (660)
Q Consensus 15 ~~~~~~~~~~~r~~~~~~~~~~~~~~~~ti~~~l~~~a~~~pd~~a~~~~~~~~~~~~~~~~~Ty~el~~~~~~lA~~L~ 94 (660)
....+....+|++...+..+| ...|+.++|.++++++||++|+++. +.. +++||+||.++++++|++|+
T Consensus 38 ~~~~~~~~~~~~~~~~~~~~p----~~~tl~~~l~~~a~~~pd~~Al~~~---~~~----~~~TY~eL~~~~~~lA~~L~ 106 (979)
T 3tsy_A 38 QSNNNNSDVIFRSKLPDIYIP----NHLSLHDYIFQNISEFATKPCLING---PTG----HVYTYSDVHVISRQIAANFH 106 (979)
T ss_dssp -------CCCBCCSSCCCCCC----TTSCHHHHHTTTGGGTTTSEEEEET---TTC----CEEEHHHHHHHHHHHHHHHH
T ss_pred cccCCCCCceeecCCCCCCCC----CCCCHHHHHHHHHHhCCCCeEEEEC---CCC----cEEEHHHHHHHHHHHHHHHH
Confidence 344455566777765543333 4579999999999999999999864 221 68999999999999999999
Q ss_pred HcCCCCCCEEEEEeCChhhHHHHHHHHHhCCCeEeecCCCCChhhHHHHhhcccceEEEEccchhhhhhccccccccCcc
Q 006115 95 ASGAEPGCRVGIYGANCPQWVEAMEACNALSLICVPLYDTLGPGAVNFILDHAEIDFVFVQDKKVKELLSPDCRSAQRLR 174 (660)
Q Consensus 95 ~~gv~~gd~V~l~~~n~~~~~~~~lA~~~~G~~~v~i~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~~~~~~~~~ 174 (660)
+.|+++||+|+++++|++++++++|||+++|++++|++|.++.+++.++++.++++++|++......+...... .. .
T Consensus 107 ~~Gv~~gd~V~i~~~ns~e~~v~~lA~~~~Ga~~vpl~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~~~--~~-~ 183 (979)
T 3tsy_A 107 KLGVNQNDVVMLLLPNCPEFVLSFLAASFRGATATAANPFFTPAEIAKQAKASNTKLIITEARYVDKIKPLQND--DG-V 183 (979)
T ss_dssp HTTCCTTCEEEEECSSCHHHHHHHHHHHHHTCEEEEECTTSCHHHHHHHHHHHTEEEEEECSTTTTTSHHHHHT--SC-C
T ss_pred HcCCCCcCEEEEEeCCCHHHHHHHHHHHHcCCEEEeeCCCCCHHHHHHHHHHcCCeEEEEChHHHHHHHHHhhc--CC-c
Confidence 99999999999999999999999999999999999999999999999999999999999998766544332211 11 1
Q ss_pred EEEEecCCcHHHHHHHhhCCceeeeHHHHHhcCcc--CCccCCCCCCCCeEEEEecCCCCCCCceeeeccHhHHHHhhhc
Q 006115 175 VMVCFTSLTAEQKEMAVQTGIKPYSWDEFLHLGKV--NEMEILPPQPFNICTIMYTSGTSGDPKGVVLTHETIATFVSGV 252 (660)
Q Consensus 175 ~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~a~i~~TSGTTG~pK~v~~th~~l~~~~~~~ 252 (660)
.++.++.... .........+.++...... ...+.....++++++|+|||||||.||+|+++|+++++.+...
T Consensus 184 ~~~~~~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~a~i~~TSGTTG~PKgV~~sh~~l~~~~~~~ 257 (979)
T 3tsy_A 184 VIVCIDDNES------VPIPEGCLRFTELTQSTTEASEVIDSVEISPDDVVALPYSSGTTGLPKGVMLTHKGLVTSVAQQ 257 (979)
T ss_dssp EEEECCCCTT------SCCCTTEEEGGGTSSCCSGGGGGSCCSCCCTTSEEECCBCCCSSSSCCBEEEEHHHHHHHHHHH
T ss_pred eEEEeCCccc------ccCCcccccHHHHhhccccccccCCcCCCCccceEEEEeCCCCCCCCeEEEechHHHHHHHHHH
Confidence 3344433210 0011223455555443322 1223345678999999999999999999999999999887665
Q ss_pred ccccccccCCCCCCcEEEEecChhhHHHHHH-HHHHhhcCcEEEEecC-ChHHHHHHhhhhcCeEEEechHHHHHHHHHH
Q 006115 253 DLFLDQFEDKMTVDDVYLSFLPLAHILDRVI-EEYFFRRGASVGYYHG-DLNALRDDLMELKPTLLAGVPRVFEKIHEGI 330 (660)
Q Consensus 253 ~~~~~~~~~~~~~~d~~l~~~p~~~~~g~~~-~~~~l~~G~~~v~~~~-~~~~~~~~i~~~~~t~l~~~p~~~~~l~~~~ 330 (660)
..... ....+.++|++++.+|++|.+++.. ++.++..|+++++.+. ++..+++.++++++|+++++|+++..|++..
T Consensus 258 ~~~~~-~~~~~~~~d~~l~~~p~~h~~~~~~~~~~~l~~G~~~v~~~~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~ 336 (979)
T 3tsy_A 258 VDGEN-PNLYFHSDDVILCVLPMFHIYALNSIMLCGLRVGAAILIMPKFEINLLLELIQRCKVTVAPMVPPIVLAIAKSS 336 (979)
T ss_dssp HCSSS-CSSCCCSSCEEEECSCSSSHHHHHHTHHHHHHHTCEEEECSSCCHHHHHHHHHHHTCCEEEECHHHHHHHHHCG
T ss_pred HHhhc-ccccCCCCCEEEEECchHHHHHHHHHHHHHHhcCcEEEEeCCCCHHHHHHHHHHhCCeEEEcHHHHHHHHHhCc
Confidence 43211 0125788999999999999999865 5777999999999876 9999999999999999999999999886531
Q ss_pred HHHHHhhchHHHHHHHHHHHHHHHHHhcCCCCCCcchhHHHHHHHHHHHHhCCcEeEEEEccCCCCHHHHHHHHHhc-CC
Q 006115 331 KKALEELRPLRRRIFDALYKYKLAWMNMGYKQREASPLADLLAFRKVKARLGGRLRLVISGGAPLSTEVEEFLRVTC-CA 409 (660)
Q Consensus 331 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~slr~v~~~G~~l~~~~~~~~~~~~-~~ 409 (660)
. ....+ .++||.+++||+++++++.+++.+.+ ++
T Consensus 337 ~-------------------------------------~~~~~--------l~~lr~~~~gg~~l~~~~~~~~~~~~~~~ 371 (979)
T 3tsy_A 337 E-------------------------------------TEKYD--------LSSIRVVKSGAAPLGKELEDAVNAKFPNA 371 (979)
T ss_dssp G-------------------------------------GGTSC--------CTTCCEEEESSCCCCSSHHHHHHHHCTTC
T ss_pred c-------------------------------------ccCCC--------ccceEEEEEcCCCCCHHHHHHHHHHCCCC
Confidence 1 11111 24899999999999999999999988 89
Q ss_pred ceeeecCCCCCCCceeccc----CCCccccCccCCCccCeeEEeeecCCCCCCCCCCCCCceEEEccCCcccccCCCchh
Q 006115 410 FLVQGYGLTETCGPTTVCF----PDEMCMVGTAGPVSVYSELRLEEVPEMGYSPLDDPPCGEVCVRGKTLFSGYYKNPDL 485 (660)
Q Consensus 410 ~v~~~YG~tE~~~~~~~~~----~~~~~~~~~~G~~~~~~~v~iv~~~~~~~~~~~~g~~GEi~v~g~~~~~gy~~~~~~ 485 (660)
++++.||+||++.+++.+. .......+++|.|+++++++|+| ++++ .+++.|+.|||+|+|+.++.||+++++.
T Consensus 372 ~l~~~YG~TE~~~~~~~~~~~~~~~~~~~~~~~G~p~~~~~~~i~d-~~~~-~~~~~g~~GEl~i~g~~v~~GY~~~p~~ 449 (979)
T 3tsy_A 372 KLGQGYGMTEAGPVLAMSLGFAKEPFPVKSGACGTVVRNAEMKIVD-PDTG-DSLSRNQPGEICIRGHQIMKGYLNNPAA 449 (979)
T ss_dssp EEEECEECGGGCSEEEECGGGSSSCCCCCTTCCCEECSSCEEEEEC-TTSC-CBCCTTCCEEEEEESTTSCSEETTCHHH
T ss_pred eEEeeechhhhhHHHHhCCCCCCCccccCCCCcCcccCCcEEEEEe-CCCC-CCCCCCCccEEEEECCCccccccCChhh
Confidence 9999999999998765542 11223457899999999999999 5433 4566778999999999999999999999
Q ss_pred hhhcc-cCCccccCceEEECCCCcEEEEeccCCeeEcCCCeeecchhHHHHHhcCcCcceEEEEecCCC---CeEEEEEE
Q 006115 486 TRESI-IDGWFHTGDIGQILPNGVVKIIDRKKNLIKISQGEYVALEYLENVYCVAPIIEDIWVYGDSLK---SMLVAVVV 561 (660)
Q Consensus 486 ~~~~f-~~g~~~TGDl~~~~~~G~l~~~GR~~d~i~~~~G~~v~~~~iE~~l~~~p~V~~~~v~~~~~~---~~~~a~v~ 561 (660)
+.+.| .+|||+|||+|++|+||+++++||.||+||+ +|++|+|.+||++|.+||+|.+|+|++.+++ +.++|+|+
T Consensus 450 t~~~f~~~g~~~TGDl~~~~~dG~l~~~GR~dd~ik~-~G~~v~~~eIE~~l~~~p~V~~~~Vv~~~~~~~g~~~~a~vv 528 (979)
T 3tsy_A 450 TAETIDKDGWLHTGDIGLIDDDDELFIVDRLKELIKY-KGFQVAPAELEALLIGHPDITDVAVVAMKEEAAGEVPVAFVV 528 (979)
T ss_dssp HHHHBCTTSCEEEEEEEEECTTSCEEEEEESCC-----------------------------------------------
T ss_pred hhhhccCCCcEEcCCEEEEcCCceEEEecCCCCEEEE-CCEEECHHHHHHHHHhCCCcceEEEEEecccCCCcEEEEEEE
Confidence 99999 7999999999999999999999999999997 7999999999999999999999999997654 37888888
Q ss_pred cChhhHHHHHHHCCCCCcHHHHhccHHHHHHHHHHHHHHHHHCCCCCceeeeEEEEecCCCCCCCCccccccccchHHHH
Q 006115 562 PCEEDTKKWAYSNGHAGSFLELCSLVQLQNYILSELKNAAERNKLRGFEHIKGVILDPRPFDMERDLVTATLKKKRNKLL 641 (660)
Q Consensus 562 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~l~~~~~p~~i~~~~~~~~~~~~P~t~~GKv~R~~l~ 641 (660)
..++... + .++|++++ +..||.|++|+.++++ +.+|+|++||++|++|+
T Consensus 529 ~~~~~~~----------------~--------~~~l~~~l-~~~l~~~~~p~~i~~v------~~lP~t~~GKi~r~~L~ 577 (979)
T 3tsy_A 529 KSKDSEL----------------S--------EDDVKQFV-SKQVVFYKRINKVFFT------ESIPKAPSGKILRKDLR 577 (979)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred ECCCCCC----------------C--------HHHHHHHH-HHhcccccCCeEEEEe------CCcCcCCCCCeeHHHHH
Confidence 7654210 0 12333444 3789999999998887 45699999999999999
Q ss_pred HHHHHHHHHHHhhh
Q 006115 642 IYYQVEIDQLYEKL 655 (660)
Q Consensus 642 ~~~~~~l~~~y~~~ 655 (660)
+++.+.+...|...
T Consensus 578 ~~~~~~~~~~~~~~ 591 (979)
T 3tsy_A 578 AKLANGLGSGMASV 591 (979)
T ss_dssp -----------CCH
T ss_pred HHHHhhcCCccccc
Confidence 99999888887643
No 25
>3ipl_A 2-succinylbenzoate--COA ligase; structural genomics, acyl-protein synthetase, PSI-2, protein structure initiative; 2.30A {Staphylococcus aureus subsp}
Probab=100.00 E-value=6e-71 Score=603.75 Aligned_cols=492 Identities=22% Similarity=0.214 Sum_probs=373.2
Q ss_pred CcHHHHHHHHHHhCCCCCceeeeccccCCCCCceEEeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEeCChhhHHHHHHHH
Q 006115 42 NTAWDIFSMSVQKYPGNRMLGWRPFVDGKFGPYVWKTYKEVYEEVLQIVSALRASGAEPGCRVGIYGANCPQWVEAMEAC 121 (660)
Q Consensus 42 ~ti~~~l~~~a~~~pd~~a~~~~~~~~~~~~~~~~~Ty~el~~~~~~lA~~L~~~gv~~gd~V~l~~~n~~~~~~~~lA~ 121 (660)
+||.++|.++|+++||++|+++. + +++||+||.++++++|++|++. +||+|+++++|++++++++|||
T Consensus 1 mtl~~~l~~~a~~~pd~~Al~~~---~------~~~Ty~eL~~~~~~lA~~L~~~---~gd~V~i~~~n~~e~~~~~lA~ 68 (501)
T 3ipl_A 1 MSLDFWLYKQAQQNGHHIAITDG---Q------ESYTYQNLYCEASLLAKRLKAY---QQSRVGLYIDNSIQSIILIHAC 68 (501)
T ss_dssp --CCCHHHHHHHHHTTSEEEECS---S------CEEEHHHHHHHHHHHHHHHHTT---CCSEEEEECCSSHHHHHHHHHH
T ss_pred CCHHHHHHHHHHhcCCceEEEeC---C------cEEEHHHHHHHHHHHHHHHHHc---CCCEEEEEcCCCHHHHHHHHHH
Confidence 36778999999999999999864 3 5899999999999999999986 8999999999999999999999
Q ss_pred HhCCCeEeecCCCCChhhHHHHhhcccceEEEEccchhhhhhccccccccCccEEEEecCCcHHHHHHHhhCCcee-eeH
Q 006115 122 NALSLICVPLYDTLGPGAVNFILDHAEIDFVFVQDKKVKELLSPDCRSAQRLRVMVCFTSLTAEQKEMAVQTGIKP-YSW 200 (660)
Q Consensus 122 ~~~G~~~v~i~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~-~~~ 200 (660)
+++|++++|+++.++.+++.++|+.++++++|++............ ......+......... ......... ...
T Consensus 69 ~~~Gav~vpl~~~~~~~~l~~~l~~~~~~~li~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~ 143 (501)
T 3ipl_A 69 WLANIEIAMINTRLTPNEMTNQMRSIDVQLIFCTLPLELRGFQIVS--LDDIEFAGRDITTNGL---LDNTMGIQYDTSN 143 (501)
T ss_dssp HHTTCEEEECCTTSCHHHHHHHHHHTTCCEEEESSCCCCTTSEEEE--TTC-----------------------------
T ss_pred HHcCCEEEecCccCCHHHHHHHHHhcCCCEEEEccccccccccccc--cccceeeeeecccccc---cccccccccccch
Confidence 9999999999999999999999999999999999876543322111 1111111110000000 000000000 000
Q ss_pred HHHHhcCccCCccCCCCCCCCeEEEEecCCCCCCCceeeeccHhHHHHhhhcccccccccCCCCCCcEEEEecChhhHHH
Q 006115 201 DEFLHLGKVNEMEILPPQPFNICTIMYTSGTSGDPKGVVLTHETIATFVSGVDLFLDQFEDKMTVDDVYLSFLPLAHILD 280 (660)
Q Consensus 201 ~~~~~~~~~~~~~~~~~~~~~~a~i~~TSGTTG~pK~v~~th~~l~~~~~~~~~~~~~~~~~~~~~d~~l~~~p~~~~~g 280 (660)
..................++++++|+|||||||.||+|.+||+++.+.+......+ ++.++|++++++|++|.+|
T Consensus 144 ~~~~~~~~~~~~~~~~~~~~d~a~i~~TSGTTG~PKgv~~th~~~~~~~~~~~~~~-----~~~~~d~~l~~~p~~~~~g 218 (501)
T 3ipl_A 144 ETVVPKESPSNILNTSFNLDDIASIMFTSGTTGPQKAVPQTFRNHYASAIGCKESL-----GFDRDTNWLSVLPIYHISG 218 (501)
T ss_dssp ------CCHHHHTCCCCCTTSEEEEEECCTTTSCCCEEEEEHHHHHHHHHHHHHHT-----CCCTTCEEEECSCTTSHHH
T ss_pred hhccccCCcccccccCCCCCCeEEEEECCCCCCCCcEEEEeHHHHHHHHHHHHHhh-----CCCccCEEEEeCcHHHHHH
Confidence 11111111111123345789999999999999999999999999999998877776 7889999999999999999
Q ss_pred HHHHHHHhhcCcEEEEecC-ChHHHHHHhhhhcCeEEEechHHHHHHHHHHHHHHHhhchHHHHHHHHHHHHHHHHHhcC
Q 006115 281 RVIEEYFFRRGASVGYYHG-DLNALRDDLMELKPTLLAGVPRVFEKIHEGIKKALEELRPLRRRIFDALYKYKLAWMNMG 359 (660)
Q Consensus 281 ~~~~~~~l~~G~~~v~~~~-~~~~~~~~i~~~~~t~l~~~p~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 359 (660)
+..++.++..|+++++.+. ++..+++.++++++|+++++|+++..|++....
T Consensus 219 ~~~~~~~l~~G~~~~~~~~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~--------------------------- 271 (501)
T 3ipl_A 219 LSVLLRAVIEGFTVRIVDKFNAEQILTMIKNERITHISLVPQTLNWLMQQGLH--------------------------- 271 (501)
T ss_dssp HHHHHHHHHHTCEEEECSSCCHHHHHHHHHHSCCCEEEECHHHHHHHHHHTCC---------------------------
T ss_pred HHHHHHHHHcCceEEeCCCCCHHHHHHHHHHcCCcEEEchHHHHHHHHhcCCC---------------------------
Confidence 9888889999999999886 999999999999999999999999988653100
Q ss_pred CCCCCcchhHHHHHHHHHHHHhCCcEeEEEEccCCCCHHHHHHHHHhcCCceeeecCCCCCCCceecccCCC-ccccCcc
Q 006115 360 YKQREASPLADLLAFRKVKARLGGRLRLVISGGAPLSTEVEEFLRVTCCAFLVQGYGLTETCGPTTVCFPDE-MCMVGTA 438 (660)
Q Consensus 360 ~~~~~~~~~~~~~~~~~~~~~~~~slr~v~~~G~~l~~~~~~~~~~~~~~~v~~~YG~tE~~~~~~~~~~~~-~~~~~~~ 438 (660)
. ..+||.+++||+++++++.+.+.+ +++++++.||+||+++.++...... .....++
T Consensus 272 ------~---------------~~~lr~i~~gG~~l~~~~~~~~~~-~~~~~~~~YG~TE~~~~~~~~~~~~~~~~~~~~ 329 (501)
T 3ipl_A 272 ------E---------------PYNLQKILLGGAKLSATMIETALQ-YNLPIYNSFGMTETCSQFLTATPEMLHARPDTV 329 (501)
T ss_dssp ------S---------------CTTCCEEEECSSCCCHHHHHHHHH-TTCCEEEEEEEGGGTEEEEEECHHHHHHCTTCC
T ss_pred ------C---------------cCcccEEEEeCCCCCHHHHHHHHH-hCCCEeccccccccccceeecCccccccCCCCC
Confidence 0 027999999999999999999887 5999999999999987655443322 2345789
Q ss_pred CCCccCeeEEeeecCCCCCCCCCCCCCceEEEccCCcccccCCCchhhhhcccCCccccCceEEECCCCcEEEEeccCCe
Q 006115 439 GPVSVYSELRLEEVPEMGYSPLDDPPCGEVCVRGKTLFSGYYKNPDLTRESIIDGWFHTGDIGQILPNGVVKIIDRKKNL 518 (660)
Q Consensus 439 G~~~~~~~v~iv~~~~~~~~~~~~g~~GEi~v~g~~~~~gy~~~~~~~~~~f~~g~~~TGDl~~~~~~G~l~~~GR~~d~ 518 (660)
|.|+++++++++| ++ .++.|||+|+|+.++.||+++++.+.. |.+|||+|||+|++|++|+++++||.||+
T Consensus 330 G~p~~~~~~~i~d-~~-------~~~~GEl~v~g~~~~~gY~~~~~~t~~-~~~g~~~TGDl~~~~~~G~l~~~GR~dd~ 400 (501)
T 3ipl_A 330 GMPSANVDVKIKN-PN-------KEGHGELMIKGANVMNGYLYPTDLTGT-FENGYFNTGDIAEIDHEGYVMIYDRRKDL 400 (501)
T ss_dssp BEECTTCEEEEES-CC-------SSCCEEEEEESTTSCSCCSBSTTCCCS-EETTEEEEEEEEEECTTSCEEEEEECCCC
T ss_pred CCCCCCcEEEEec-CC-------CCCccEEEEeccchhhhhCcChhhcch-hcCCceecCCEEEEcCCCeEEEEccccce
Confidence 9999999999999 43 345799999999999999999999887 88999999999999999999999999999
Q ss_pred eEcCCCeeecchhHHHHHhcCcCcceEEEEecCCCC---eEEEEEEcChhhHHHHHHHCCCCCcHHHHhccHHHHHHHHH
Q 006115 519 IKISQGEYVALEYLENVYCVAPIIEDIWVYGDSLKS---MLVAVVVPCEEDTKKWAYSNGHAGSFLELCSLVQLQNYILS 595 (660)
Q Consensus 519 i~~~~G~~v~~~~iE~~l~~~p~V~~~~v~~~~~~~---~~~a~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 595 (660)
||+ +|++|+|.+||++|.+||+|.+|+|++.+++. .++++++...+. +. +
T Consensus 401 ik~-~G~~v~p~eiE~~l~~~p~V~~~~vv~~~~~~~g~~~~a~v~~~~~~------------------~~--------~ 453 (501)
T 3ipl_A 401 IIS-GGENIYPYQIETVAKQFPGISDAVCVGHPDDTWGQVPKLYFVSESDI------------------SK--------A 453 (501)
T ss_dssp EEC-SSCEECHHHHHHHHTTSTTEEEEEEEEEEETTTEEEEEEEEEESSCC------------------CH--------H
T ss_pred EEE-CCEEECHHHHHHHHHhCCCccEEEEEEEecccCCceEEEEEEeCCCC------------------CH--------H
Confidence 996 89999999999999999999999999976553 677888765432 11 2
Q ss_pred HHHHHHHHCCCCCceeeeEEEEecCCCCCCCCccccccccchHHHHHHHHHH
Q 006115 596 ELKNAAERNKLRGFEHIKGVILDPRPFDMERDLVTATLKKKRNKLLIYYQVE 647 (660)
Q Consensus 596 ~l~~~~~~~~l~~~~~p~~i~~~~~~~~~~~~P~t~~GKv~R~~l~~~~~~~ 647 (660)
+|+++++ .+||.|++|+.|+++ +.+|+|++||++|++|++.+.++
T Consensus 454 ~l~~~l~-~~L~~~~~P~~i~~v------~~lP~t~~GKi~R~~l~~~~~~~ 498 (501)
T 3ipl_A 454 QLIAYLS-KHLAKYKVPKHFEKV------DTLPYTSTGKLQRNKLYREGHHH 498 (501)
T ss_dssp HHHHHHH-HHSCGGGSCSEEEEC------SSCC-------------------
T ss_pred HHHHHHH-hhCccccCCCEEEEe------cccCCCCCCCEeHHHHhhccccc
Confidence 2333443 579999999999997 45699999999999999988654
No 26
>3nyq_A Malonyl-COA ligase; A/B topology ababa sandwich beta-barrel adenylate-forming EN fold; HET: MCA AMP; 1.43A {Streptomyces coelicolor} PDB: 3nyr_A*
Probab=100.00 E-value=1.4e-70 Score=599.88 Aligned_cols=478 Identities=25% Similarity=0.291 Sum_probs=372.3
Q ss_pred CCCCCcHHHHHHHHHHhCCC-CCceeeeccccCCCCCceEEeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEeCChhhHHH
Q 006115 38 DSDLNTAWDIFSMSVQKYPG-NRMLGWRPFVDGKFGPYVWKTYKEVYEEVLQIVSALRASGAEPGCRVGIYGANCPQWVE 116 (660)
Q Consensus 38 ~~~~~ti~~~l~~~a~~~pd-~~a~~~~~~~~~~~~~~~~~Ty~el~~~~~~lA~~L~~~gv~~gd~V~l~~~n~~~~~~ 116 (660)
...+.++.+.|.++++++|+ ++|+++. + +++||+||.++++++|.+|. .|++|+++++|++++++
T Consensus 18 ~~~~~tl~~~l~~~a~~~p~d~~Al~~~----~-----~~~Ty~eL~~~~~~~A~~L~-----~~~~V~i~~~~~~~~~~ 83 (505)
T 3nyq_A 18 GSHMSSLFPALSPAPTGAPADRPALRFG----E-----RSLTYAELAAAAGATAGRIG-----GAGRVAVWATPAMETGV 83 (505)
T ss_dssp ------CCTTTSSCCCSGGGGSEEEEET----T-----EEEEHHHHHHHHHHHHTTCC--------CEEEECCSSHHHHH
T ss_pred CcccchhHHHHHHHHHhCCCCCeEEEEC----C-----eeeeHHHHHHHHHHHHhhcc-----CCCEEEEEcCCCHHHHH
Confidence 34578899999999998887 9999874 3 68999999999999998875 38899999999999999
Q ss_pred HHHHHHhCCCeEeecCCCCChhhHHHHhhcccceEEEEccchhhhhhccccccccCccEEEEecCCcHHHHHHHhhCCce
Q 006115 117 AMEACNALSLICVPLYDTLGPGAVNFILDHAEIDFVFVQDKKVKELLSPDCRSAQRLRVMVCFTSLTAEQKEMAVQTGIK 196 (660)
Q Consensus 117 ~~lA~~~~G~~~v~i~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~ 196 (660)
++|||+++|++++|++|.++.+++.++|+.++++++|++..... ......+..+ ..+..
T Consensus 84 ~~la~~~~Ga~~vpl~~~~~~~~l~~il~~~~~~~vi~~~~~~~------~~~~~~~~~~-~~~~~-------------- 142 (505)
T 3nyq_A 84 AVVAALLAGVAAVPLNPKSGDKELAHILSDSAPSLVLAPPDAEL------PPALGALERV-DVDVR-------------- 142 (505)
T ss_dssp HHHHHHHHTCCEEEECTTCCHHHHHHHHHHHCCSEEEECTTCCC------CGGGTTSEEE-ECCTT--------------
T ss_pred HHHHHHHhCCEEEEcCCCCCHHHHHHHHHHCCCCEEEECCcccc------chhhcccccc-ccccc--------------
Confidence 99999999999999999999999999999999999999875211 0111111111 11100
Q ss_pred eeeHHHHHhcCccCCccCCCCCCCCeEEEEecCCCCCCCceeeeccHhHHHHhhhcccccccccCCCCCCcEEEEecChh
Q 006115 197 PYSWDEFLHLGKVNEMEILPPQPFNICTIMYTSGTSGDPKGVVLTHETIATFVSGVDLFLDQFEDKMTVDDVYLSFLPLA 276 (660)
Q Consensus 197 ~~~~~~~~~~~~~~~~~~~~~~~~~~a~i~~TSGTTG~pK~v~~th~~l~~~~~~~~~~~~~~~~~~~~~d~~l~~~p~~ 276 (660)
.....+.....++++++|+|||||||.||+|+++|+++.+.+..+...+ ++.++|++++.+|++
T Consensus 143 -----------~~~~~~~~~~~~~d~a~i~~TSGTTG~PKgV~~sh~~l~~~~~~~~~~~-----~~~~~d~~l~~~p~~ 206 (505)
T 3nyq_A 143 -----------ARGAVPEDGADDGDPALVVYTSGTTGPPKGAVIPRRALATTLDALADAW-----QWTGEDVLVQGLPLF 206 (505)
T ss_dssp -----------CCCCCCCCCCCTTSEEEEEEECCSSSSCEEEEEEHHHHHHHHHHHHHHH-----TCCTTCEEEECCCTT
T ss_pred -----------cccCCCCCCCCCCCeEEEEeCCCCcCCCCeEEEeHHHHHHHHHHHHHHh-----CCCCCcEEEEeccHH
Confidence 0111223345788999999999999999999999999999998887777 788999999999999
Q ss_pred hHHHHHH-HHHHhhcCcEEEEecC-ChHHHHHHhhhhcCeEEEechHHHHHHHHHHHHHHHhhchHHHHHHHHHHHHHHH
Q 006115 277 HILDRVI-EEYFFRRGASVGYYHG-DLNALRDDLMELKPTLLAGVPRVFEKIHEGIKKALEELRPLRRRIFDALYKYKLA 354 (660)
Q Consensus 277 ~~~g~~~-~~~~l~~G~~~v~~~~-~~~~~~~~i~~~~~t~l~~~p~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 354 (660)
|..|+.. ++.++..|+++++.+. ++..+++.+ ++++|+++++|+++..+++.+.....
T Consensus 207 ~~~g~~~~~~~~l~~G~~~~~~~~~~~~~~~~~i-~~~~t~~~~~P~~~~~l~~~~~~~~~------------------- 266 (505)
T 3nyq_A 207 HVHGLVLGILGPLRRGGSVRHLGRFSTEGAAREL-NDGATMLFGVPTMYHRIAETLPADPE------------------- 266 (505)
T ss_dssp SHHHHTTTTHHHHHHTCEEEECSSCCHHHHHHHH-TTTCCEEEECHHHHHHHHHHGGGCHH-------------------
T ss_pred HHHHHHHHHHHHHhcCCEEEECCCCChHHHHHHH-hhCCeEEEehHHHHHHHHHhhhcCch-------------------
Confidence 9999875 6788999999998876 899999999 88999999999999998764321110
Q ss_pred HHhcCCCCCCcchhHHHHHHHHHHHHhCCcEeEEEEccCCCCHHHHHHHHHhcCCceeeecCCCCCCCceecccCCCccc
Q 006115 355 WMNMGYKQREASPLADLLAFRKVKARLGGRLRLVISGGAPLSTEVEEFLRVTCCAFLVQGYGLTETCGPTTVCFPDEMCM 434 (660)
Q Consensus 355 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~slr~v~~~G~~l~~~~~~~~~~~~~~~v~~~YG~tE~~~~~~~~~~~~~~~ 434 (660)
....+ +++|.+++||+++++++.+++.+.+++++++.||+||++..++...... ..
T Consensus 267 ---------------~~~~l--------~~lr~i~~gg~~l~~~~~~~~~~~~~~~~~~~YG~TE~~~~~~~~~~~~-~~ 322 (505)
T 3nyq_A 267 ---------------LAKAL--------AGARLLVSGSAALPVHDHERIAAATGRRVIERYGMTETLMNTSVRADGE-PR 322 (505)
T ss_dssp ---------------HHHHH--------HHCSEEEECSSCCCHHHHHHHHHHHSCCCEEEEEETTTEEEEECCTTSC-CC
T ss_pred ---------------hhccc--------ccceEEEECCCCCCHHHHHHHHHhcCCeeecccchhhcccccccCCCCC-CC
Confidence 00112 2899999999999999999999989999999999999987766554433 34
Q ss_pred cCccCCCccCeeEEeeecCCCCCCCC-CCCCCceEEEccCCcccccCCCchhhhhcc-cCCccccCceEEECCCCcEEEE
Q 006115 435 VGTAGPVSVYSELRLEEVPEMGYSPL-DDPPCGEVCVRGKTLFSGYYKNPDLTRESI-IDGWFHTGDIGQILPNGVVKII 512 (660)
Q Consensus 435 ~~~~G~~~~~~~v~iv~~~~~~~~~~-~~g~~GEi~v~g~~~~~gy~~~~~~~~~~f-~~g~~~TGDl~~~~~~G~l~~~ 512 (660)
.+++|+|+++++++|+| +++...+. +.|+.|||+|+|++++.||+++++.+.+.| .+|||+|||+|++++||+++++
T Consensus 323 ~~~vG~p~~~~~~~i~d-~~g~~~~~~~~g~~GEl~v~g~~v~~GY~~~~~~t~~~f~~~g~y~TGDl~~~~~dG~l~~~ 401 (505)
T 3nyq_A 323 AGTVGVPLPGVELRLVE-EDGTPIAALDGESVGEIQVRGPNLFTEYLNRPDATAAAFTEDGFFRTGDMAVRDPDGYVRIV 401 (505)
T ss_dssp TTCCCEECTTCEEEEC------CCCCCCSCCCEEEEEESTTSCCEETTCHHHHHHTBCTTSCEEEEEEEEECTTSCEEEE
T ss_pred CCCcccCCCCCEEEEEC-CCCCCcccCCCCceEEEEEecCchhhhhCCChhHhhhhhcCCCCCccCCeEEECCCccEEEe
Confidence 47899999999999999 66665543 447899999999999999999999999999 6999999999999999999999
Q ss_pred ecc-CCeeEcCCCeeecchhHHHHHhcCcCcceEEEEecCCC---CeEEEEEEcChhhHHHHHHHCCCCCcHHHHhccHH
Q 006115 513 DRK-KNLIKISQGEYVALEYLENVYCVAPIIEDIWVYGDSLK---SMLVAVVVPCEEDTKKWAYSNGHAGSFLELCSLVQ 588 (660)
Q Consensus 513 GR~-~d~i~~~~G~~v~~~~iE~~l~~~p~V~~~~v~~~~~~---~~~~a~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 588 (660)
||. ||+||+ +|++|+|.+||++|.+||+|.+|+|++.+++ +.++|+|++.+... .. .
T Consensus 402 GR~~d~~ik~-~G~~v~~~eIE~~l~~~p~V~~a~Vv~~~~~~~g~~l~a~vv~~~~~~-------~~--------~--- 462 (505)
T 3nyq_A 402 GRKATDLIKS-GGYKIGAGEIENALLEHPEVREAAVTGEPDPDLGERIVAWIVPADPAA-------PP--------A--- 462 (505)
T ss_dssp EESSCCCEEE-TTEEECHHHHHHHHTTSTTEEEEEEEEEEETTTEEEEEEEEEESSTTS-------CC--------C---
T ss_pred CCccCceEEe-CCEEECHHHHHHHHHHCcCccEEEEEeeECCCCCcEEEEEEEECCCCC-------CC--------C---
Confidence 998 599996 8999999999999999999999999987654 37999999875320 00 1
Q ss_pred HHHHHHHHHHHHHHHCCCCCceeeeEEEEecCCCCCCCCccccccccchHHHHH
Q 006115 589 LQNYILSELKNAAERNKLRGFEHIKGVILDPRPFDMERDLVTATLKKKRNKLLI 642 (660)
Q Consensus 589 ~~~~~~~~l~~~~~~~~l~~~~~p~~i~~~~~~~~~~~~P~t~~GKv~R~~l~~ 642 (660)
.++|+++++ +.||.|++|+.|+++ +.+|+|++||++|++|++
T Consensus 463 -----~~~l~~~l~-~~L~~~~~P~~i~~v------~~lP~t~~GKi~r~~L~~ 504 (505)
T 3nyq_A 463 -----LGTLADHVA-ARLAPHKRPRVVRYL------DAVPRNDMGKIMKRALNR 504 (505)
T ss_dssp -----HHHHHHHHH-HHTCGGGSCSEEEEC------SCCCC-------------
T ss_pred -----HHHHHHHHH-hhCCCCcCccEEEEE------CCCCCCCCcCeeHHhhcc
Confidence 123334443 679999999999987 456999999999999986
No 27
>3gqw_A Fatty acid AMP ligase; FAAL, E. coli, ATP-dependent binding enzyme family,, structural genomics, PSI-2, protein structure initiative; HET: ZZ9; 3.00A {Escherichia coli O6} PDB: 3pbk_A*
Probab=100.00 E-value=3.7e-68 Score=592.70 Aligned_cols=517 Identities=18% Similarity=0.206 Sum_probs=401.9
Q ss_pred ccCCCCCCCCCCCCcHHHHHHHHHHhCCCCCceeeeccccCCCCCceEEeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEe
Q 006115 29 LASNGFPSVDSDLNTAWDIFSMSVQKYPGNRMLGWRPFVDGKFGPYVWKTYKEVYEEVLQIVSALRASGAEPGCRVGIYG 108 (660)
Q Consensus 29 ~~~~~~~~~~~~~~ti~~~l~~~a~~~pd~~a~~~~~~~~~~~~~~~~~Ty~el~~~~~~lA~~L~~~gv~~gd~V~l~~ 108 (660)
...+.+|...+...|+.++|+++++++|+.+++.. ..+..+++||+||.++++++|++|++.|+++||+|++++
T Consensus 8 ~~~~~~~~~~~~~~tl~~~l~~~a~~~p~~~~~~~------~~~~~~~~Ty~eL~~~~~~lA~~L~~~Gv~~gd~V~i~~ 81 (576)
T 3gqw_A 8 IFTHSLPMRYADFPTLVDALDYAALSSAGMNFYDR------RCQLEDQLEYQTLKARAEAGAKRLLSLNLKKGDRVALIA 81 (576)
T ss_dssp ------CCCCSCCSSHHHHHHHHTTSSCEEEEECT------TSCEEEEEEHHHHHHHHHHHHHHHHHTCCCTTCEEEEEC
T ss_pred hhcCCCCcccCCCCcHHHHHHHHhhCCCCeEEeCC------CCCceeEEcHHHHHHHHHHHHHHHHHcCCCCCCEEEEEc
Confidence 45667787888899999999999999999877743 222337899999999999999999999999999999999
Q ss_pred CChhhHHHHHHHHHhCCCeEeecCCCCC-------hhhHHHHhhcccceEEEEccchhhhhhccccccccCccEEEEecC
Q 006115 109 ANCPQWVEAMEACNALSLICVPLYDTLG-------PGAVNFILDHAEIDFVFVQDKKVKELLSPDCRSAQRLRVMVCFTS 181 (660)
Q Consensus 109 ~n~~~~~~~~lA~~~~G~~~v~i~~~~~-------~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~~~~~~~~~~i~~~~~ 181 (660)
+|++++++++|||+++|++++|+++.++ .+++.++++.++++++|++++....+..... ......
T Consensus 82 ~~~~~~~~~~lA~~~~G~~~vpl~~~~~~~~~~~~~~~l~~~l~~~~~~~ii~~~~~~~~~~~~~~-~~~~~~------- 153 (576)
T 3gqw_A 82 ETSSEFVEAFFACQYAGLVAVPLAIPMGVGQRDSWSAKLQGLLASCQPAAIITGDEWLPLVNAATH-DNPELH------- 153 (576)
T ss_dssp CSSHHHHHHHHHHHHTTCEEEEECCCSSSSSHHHHHHHHHHHHHHHCCSEEEECGGGHHHHHHHGG-GCTTCE-------
T ss_pred CCcHHHHHHHHHHHHhCCeEeecCCCCcccchhhHHHHHHHHHHhcCCCEEEecHHHHHHHHHhhc-cCCcce-------
Confidence 9999999999999999999999999998 7899999999999999999886654433221 111111
Q ss_pred CcHHHHHHHhhCCceeeeHHHHHhcCccCCccCCCCCCCCeEEEEecCCCCCCCceeeeccHhHHHHhhhcccc-ccccc
Q 006115 182 LTAEQKEMAVQTGIKPYSWDEFLHLGKVNEMEILPPQPFNICTIMYTSGTSGDPKGVVLTHETIATFVSGVDLF-LDQFE 260 (660)
Q Consensus 182 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~i~~TSGTTG~pK~v~~th~~l~~~~~~~~~~-~~~~~ 260 (660)
........ .............++++++|+|||||||.||+|+++|+++++.+..+... +
T Consensus 154 ---------------~~~~~~~~-~~~~~~~~~~~~~~~d~a~i~~TSGTTG~PKgV~~sh~~~~~~~~~~~~~~~---- 213 (576)
T 3gqw_A 154 ---------------VLSHAWFK-ALPEADVALQRPVPNDIAYLQYTSGSTRFPRGVIITHREVMANLRAISHDGI---- 213 (576)
T ss_dssp ---------------EEEHHHHH-TSCCCCCCCCCCCTTSEEEEECTTSCSSSCCCEEEEHHHHHHHHHHHHHTTS----
T ss_pred ---------------ecchhhhh-cccccccccCCCCCCCeEEEEeCCCCCCCCceEEeeHHHHHHHHHHhhhccc----
Confidence 11111111 11122223334568999999999999999999999999999888776443 3
Q ss_pred CCCCCCcEEEEecChhhHHHHHH-HHHHhhcCcEEEEecC-----ChHHHHHHhhhhcCeEEEechHHHHHHHHHHHHHH
Q 006115 261 DKMTVDDVYLSFLPLAHILDRVI-EEYFFRRGASVGYYHG-----DLNALRDDLMELKPTLLAGVPRVFEKIHEGIKKAL 334 (660)
Q Consensus 261 ~~~~~~d~~l~~~p~~~~~g~~~-~~~~l~~G~~~v~~~~-----~~~~~~~~i~~~~~t~l~~~p~~~~~l~~~~~~~~ 334 (660)
++.++|++++++|++|.+|+.. ++.++..|+++++.+. ++..+++.++++++|+++++|+++..+.+.+....
T Consensus 214 -~~~~~d~~l~~~p~~h~~g~~~~~~~~l~~g~~~~~~~~~~~~~~~~~~~~~i~~~~~t~~~~~p~~~~~l~~~~~~~~ 292 (576)
T 3gqw_A 214 -KLRPGDRCVSWLPFYHDMGLVGFLLTPVATQLSVDYLRTQDFAMRPLQWLKLISKNRGTVSVAPPFGYELCQRRVNEKD 292 (576)
T ss_dssp -CCCTTCCEEECCCTTSHHHHHHHTHHHHHTTCCEEECCHHHHHHCTTHHHHHHHHTTCCEEEECHHHHHHHHHSCCHHH
T ss_pred -CCCCcceEEEcCCccccccHHHHHHHHHhcCceEEEcchhHhhhCHHHHHHHHHHhCCeEEEcCHHHHHHHHHHhcccc
Confidence 7889999999999999999876 5667888999888763 78999999999999999999999987754321110
Q ss_pred HhhchHHHHHHHHHHHHHHHHHhcCCCCCCcchhHHHHHHHHHHHHhCCcEeEEEEccCCCCHHHHHHHHHhc------C
Q 006115 335 EELRPLRRRIFDALYKYKLAWMNMGYKQREASPLADLLAFRKVKARLGGRLRLVISGGAPLSTEVEEFLRVTC------C 408 (660)
Q Consensus 335 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~slr~v~~~G~~l~~~~~~~~~~~~------~ 408 (660)
.. ...+++||.+++||+++++++.+.+.+.+ +
T Consensus 293 ----------------------------------~~--------~~~l~~lr~~~~gg~~l~~~~~~~~~~~~~~~~~~~ 330 (576)
T 3gqw_A 293 ----------------------------------LA--------ELDLSCWRVAGIGAEPISAEQLHQFAECFRQVNFDN 330 (576)
T ss_dssp ----------------------------------HT--------TCCCTTCCEEEECSSCCCHHHHHHHHHHHGGGTCCG
T ss_pred ----------------------------------cc--------cCChhhhHhhhccCccCCHHHHHHHHHHHhhcCCCc
Confidence 01 11125899999999999999999999887 6
Q ss_pred CceeeecCCCCCCCceecccCCCc---------------------------cccCccCCCccCeeEEeeecCCCCCCCCC
Q 006115 409 AFLVQGYGLTETCGPTTVCFPDEM---------------------------CMVGTAGPVSVYSELRLEEVPEMGYSPLD 461 (660)
Q Consensus 409 ~~v~~~YG~tE~~~~~~~~~~~~~---------------------------~~~~~~G~~~~~~~v~iv~~~~~~~~~~~ 461 (660)
+++++.||+||++..++....... ....++|+|+++++++|+| +++. +++
T Consensus 331 ~~~~~~YG~TE~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~G~p~~~~~~~i~d-~~g~--~~~ 407 (576)
T 3gqw_A 331 KTFMPCYGLAENALAVSFSDEASGVVVNEVDRDILEYQGKAVAPGAETRAVSTFVNCGKALPEHGIEIRN-EAGM--PVA 407 (576)
T ss_dssp GGEEEEEECGGGSSEEEECCTTCCCCEEEEEHHHHHHHCBCCCCCTTCCCEEEEEBCCEECTTCEEEEEC-TTSC--BCC
T ss_pred ccccccCCcccccceeecccccCCccccccchhhhcccCcccccCccccCccceeecCCcCCCCeEEEEC-CCCC--CCC
Confidence 889999999999988776532210 1113789999999999999 5554 456
Q ss_pred CCCCceEEEccCCcccccCCCchhhhhcccCCccccCceEEECCCCcEEEEeccCCeeEcCCCeeecchhHHHHHhcCcC
Q 006115 462 DPPCGEVCVRGKTLFSGYYKNPDLTRESIIDGWFHTGDIGQILPNGVVKIIDRKKNLIKISQGEYVALEYLENVYCVAPI 541 (660)
Q Consensus 462 ~g~~GEi~v~g~~~~~gy~~~~~~~~~~f~~g~~~TGDl~~~~~~G~l~~~GR~~d~i~~~~G~~v~~~~iE~~l~~~p~ 541 (660)
.|+.|||+|+|+.++.||+++++.+...+.+|||+|||+|++ +||.++++||.||+||+ +|++|+|.+||++|.+||.
T Consensus 408 ~g~~GEl~v~g~~~~~gY~~~~~~~~~~~~~g~~~TGDl~~~-~dG~l~~~GR~dd~ik~-~G~~v~p~eIE~~l~~~p~ 485 (576)
T 3gqw_A 408 ERVVGHICISGPSLMSGYFGDQVSQDEIAATGWLDTGDLGYL-LDGYLYVTGRIKDLIII-RGRNIWPQDIEYIAEQEPE 485 (576)
T ss_dssp TTBCEEEEEESTTSCCCBTTCHHHHHHHHHHSCEEEEEEEEE-ETTEEEEEEETTTCEEE-TTEEECHHHHHHHHTTSSS
T ss_pred CCCeEEEEEeCccccccccCCccccccccCCCeeeccceEEE-ECCEEEEEecCcceEEE-CCEEECHHHHHHHHHhCcc
Confidence 678999999999999999999999888889999999999999 79999999999999997 8999999999999999999
Q ss_pred cceEEEEecCCC-CeEEEEEEcChhhHHHHHHHCCCCCcHHHHhccHHHHHHHHHHHHHHHHHCCCCCceeeeEEEEecC
Q 006115 542 IEDIWVYGDSLK-SMLVAVVVPCEEDTKKWAYSNGHAGSFLELCSLVQLQNYILSELKNAAERNKLRGFEHIKGVILDPR 620 (660)
Q Consensus 542 V~~~~v~~~~~~-~~~~a~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~l~~~~~p~~i~~~~~ 620 (660)
|.+|+|++..+. ...++++..... .++..+.+.+.+.+.+ .+.|++|..+.+++
T Consensus 486 V~~~~vv~~~~~~~~~~~~~~~~~~--------------------~~~~~~~l~~~l~~~l----~~~~~~p~~i~~v~- 540 (576)
T 3gqw_A 486 IHSGDAIAFVTAQEKIILQIQCRIS--------------------DEERRGQLIHALAARI----QSEFGVTAAIDLLP- 540 (576)
T ss_dssp CCTTSEEEEECTTSCEEEEEECCCC--------------------CHHHHHHHHHHHHHHH----HHHHSCCEEEEEEC-
T ss_pred cccccEEEEEcCCccEEEEEEEecC--------------------chhHHHHHHHHHHHHH----HHHhCCceeEEEEC-
Confidence 998777764433 344444444332 1112223333333222 14577888888874
Q ss_pred CCCCCCCccccccccchHHHHHHHHHHHHHHHhhh
Q 006115 621 PFDMERDLVTATLKKKRNKLLIYYQVEIDQLYEKL 655 (660)
Q Consensus 621 ~~~~~~~P~t~~GKv~R~~l~~~~~~~l~~~y~~~ 655 (660)
.+.+|+|++||++|++|+++|++.+++.|...
T Consensus 541 ---~~~lP~t~~GKi~r~~l~~~~~~~~~~~~~~~ 572 (576)
T 3gqw_A 541 ---PHSIPRTSSGKPARAEAKKRYQKAYAASLNVQ 572 (576)
T ss_dssp ---SSCSCBCTTSSBCHHHHHHHHHHHHTCC----
T ss_pred ---CCCcCcCCCccchHHHHHHHHHHHhhhccchh
Confidence 24679999999999999999999988777644
No 28
>3ite_A SIDN siderophore synthetase; ligase, non-ribosomal peptide synthesis, NRPS, sidna3, fungal, endophyte; HET: MSE; 2.00A {Neotyphodium lolii}
Probab=100.00 E-value=4.8e-69 Score=596.91 Aligned_cols=518 Identities=17% Similarity=0.145 Sum_probs=318.9
Q ss_pred CCCCcHHHHHHHHHHhCCCCCceeeeccccC----CCCCceEEeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEeCChhhH
Q 006115 39 SDLNTAWDIFSMSVQKYPGNRMLGWRPFVDG----KFGPYVWKTYKEVYEEVLQIVSALRASGAEPGCRVGIYGANCPQW 114 (660)
Q Consensus 39 ~~~~ti~~~l~~~a~~~pd~~a~~~~~~~~~----~~~~~~~~Ty~el~~~~~~lA~~L~~~gv~~gd~V~l~~~n~~~~ 114 (660)
....|+.++|+++|+++||++|+++. ++ .....+++||+||.++++++|++|.+.|+ +||+|+++++|++++
T Consensus 17 ~~~~tl~~~l~~~a~~~p~~~A~~~~---~~~~~~~~~~~~~~Ty~eL~~~~~~lA~~L~~~g~-~gd~V~i~~~n~~~~ 92 (562)
T 3ite_A 17 TSTVPPSHYIETWAKTHPEWKAVEVA---TGFLGSQKIVTEDWTYKKLNETANQVANLIIHASL-HGRAIAVSLDRSLIA 92 (562)
T ss_dssp -CCCCTTHHHHHHHHHCTTSEEEEEE---ECC-----CEEEEEEHHHHHHHHHHHHHHHHHTTC-SSCEEEEECCSCHHH
T ss_pred cccCCHHHHHHHHHHHCCCchhhhcc---cccccccccccCCCCHHHHHHHHHHHHHHHHhcCC-CCCEEEEEeCCCHHH
Confidence 44578999999999999999999875 32 12234789999999999999999999999 799999999999999
Q ss_pred HHHHHHHHhCCCeEeecCCCCChhhHHHHhhcccceEEEEccchhhhhhccccccccCccEEEEecCCcHHHHHHHhhCC
Q 006115 115 VEAMEACNALSLICVPLYDTLGPGAVNFILDHAEIDFVFVQDKKVKELLSPDCRSAQRLRVMVCFTSLTAEQKEMAVQTG 194 (660)
Q Consensus 115 ~~~~lA~~~~G~~~v~i~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~ 194 (660)
++++|||+++|++++|++|.++.+++.++|+.++++++|+++....... ......++.....
T Consensus 93 ~~~~lA~~~~Gav~vpl~~~~~~~~l~~~l~~~~~~~~i~~~~~~~~~~------~~~~~~~~~~~~~------------ 154 (562)
T 3ite_A 93 FAIIVGIMKSGNTYVPIEAGLPNDRKSFLLRDSRAAMAFVCDNNFDGVE------LPPETKVLDTKNQ------------ 154 (562)
T ss_dssp HHHHHHHHHTTCEEEECCTTSCHHHHHHHHHHHTCSEEEECTTTTTTCC------CCTTCEEEETTCH------------
T ss_pred HHHHHHHHHhCCEEEecCCcCHHHHHHHHHHhcCCCEEEEccccccccc------cCccceeecccch------------
Confidence 9999999999999999999999999999999999999999876554321 1111122221111
Q ss_pred ceeeeHHHHHhcCccCCccCCCCCCCCeEEEEecCCCCCCCceeeeccHhHHHHhhhcccccc---cccCCCCCCcEEEE
Q 006115 195 IKPYSWDEFLHLGKVNEMEILPPQPFNICTIMYTSGTSGDPKGVVLTHETIATFVSGVDLFLD---QFEDKMTVDDVYLS 271 (660)
Q Consensus 195 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~i~~TSGTTG~pK~v~~th~~l~~~~~~~~~~~~---~~~~~~~~~d~~l~ 271 (660)
.+.+...... .........++++++|+|||||||.||+|++||+++.+.+..+...+. .....+...+++++
T Consensus 155 ----~~~~~~~~~~-~~~~~~~~~~~~~a~i~~TSGTTG~PKgV~~th~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 229 (562)
T 3ite_A 155 ----SFIENLSTQD-TSDILNNYPENLDAYLLYTSGSTGTPKGVRVSRHNLSSFSDAWGKLIGNVAPKSLELGGVGKFLC 229 (562)
T ss_dssp ----HHHHHHHHSC-CSCCCCCCCTTSEEEEEEECC---CCEEEEEEHHHHHHHHHHHHHHHHHHCGGGGGCTTTCEEEC
T ss_pred ----hhhhhccccc-ccccccCCCCCCcEEEEECCCCCCCCcEEEECchhHHHHHHHHHhhhccccchhcccCcCceEEE
Confidence 1222222211 111223456788999999999999999999999999988776544321 11124778899999
Q ss_pred ecChhhHHHHHHHHHHhhcCcEEEEecC--ChHHHHHHhhhhcCeEEEechHHHHHHHHHHHHHHHhhchHHHHHHHHHH
Q 006115 272 FLPLAHILDRVIEEYFFRRGASVGYYHG--DLNALRDDLMELKPTLLAGVPRVFEKIHEGIKKALEELRPLRRRIFDALY 349 (660)
Q Consensus 272 ~~p~~~~~g~~~~~~~l~~G~~~v~~~~--~~~~~~~~i~~~~~t~l~~~p~~~~~l~~~~~~~~~~~~~~~~~~~~~~~ 349 (660)
..|+.|..++..++.++..|+++++.+. .+..+.+.++++++|+++++|+++..+...
T Consensus 230 ~~~~~~~~~~~~~~~~l~~g~~~~~~~~~~~~~~~~~~i~~~~~t~~~~~P~~l~~~~~~-------------------- 289 (562)
T 3ite_A 230 LASRAFDVHIGEMFLAWRFGLCAVTGERLSMLDDLPRTFRELGVTHAGIVPSLLDQTGLV-------------------- 289 (562)
T ss_dssp CSCTTSTHHHHHHHHHHHTTCEEEECCHHHHHHSHHHHHHHTTCCEEEECHHHHHHHTCC--------------------
T ss_pred ecCchhhhhHHHHHHHHhcccEEEecchhhCHHHHHHHHHHcCCCEEEcCHHHHhhcccC--------------------
Confidence 9999998888878888999999988764 467889999999999999999987664210
Q ss_pred HHHHHHHhcCCCCCCcchhHHHHHHHHHHHHhCCcEeEEEEccCCCCHHHHHHHHHhcCCceeeecCCCCCCCceecccC
Q 006115 350 KYKLAWMNMGYKQREASPLADLLAFRKVKARLGGRLRLVISGGAPLSTEVEEFLRVTCCAFLVQGYGLTETCGPTTVCFP 429 (660)
Q Consensus 350 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~slr~v~~~G~~l~~~~~~~~~~~~~~~v~~~YG~tE~~~~~~~~~~ 429 (660)
+ . ..++||.+++||+++++++.+.+++.+++++++.||+||++..++....
T Consensus 290 -----------------~----~--------~~~~lr~~~~gG~~l~~~~~~~~~~~~~~~~~~~YG~TE~~~~~~~~~~ 340 (562)
T 3ite_A 290 -----------------P----E--------DAPHLVYLGVGGEKMTPRTQQIWSSSDRVALVNVYGPTEVTIGCSAGRI 340 (562)
T ss_dssp -----------------G----G--------GSTTCCEEEEESSCCCHHHHHHHTTCSSCEEEEEECCGGGCSCSEEEEC
T ss_pred -----------------c----c--------ccCceEEEEEecCCCCHHHHHHHhhCCCcEEEEeeccchheeeeeeeee
Confidence 0 0 1148999999999999999999998889999999999999987776655
Q ss_pred CCccccCccCCCccCeeEEeeecCCCCCCCCCCCCCceEEEccCCcccccCCCchhhhhcccCC--ccccCceEEECCCC
Q 006115 430 DEMCMVGTAGPVSVYSELRLEEVPEMGYSPLDDPPCGEVCVRGKTLFSGYYKNPDLTRESIIDG--WFHTGDIGQILPNG 507 (660)
Q Consensus 430 ~~~~~~~~~G~~~~~~~v~iv~~~~~~~~~~~~g~~GEi~v~g~~~~~gy~~~~~~~~~~f~~g--~~~TGDl~~~~~~G 507 (660)
.......++|.|++++++++++ ++++ .+++.|+.|||+|+|++++.|||++++.+...+.+| ||+|||+|++|+||
T Consensus 341 ~~~~~~~~~G~p~~~~~~~i~d-~~~~-~~~~~g~~GEl~v~g~~v~~GY~~~p~~t~~~~~~g~~w~~TGDlg~~d~dG 418 (562)
T 3ite_A 341 LPDSDTRCIGHPLGDSVAHVLA-PGSN-EHVKKGMAGELVIEGSLVANGYLNRPDAKGFCDINGRKMYRTGDIVRMDADS 418 (562)
T ss_dssp CTTSCTTEEEEECTTCEEEEEC-TTSS-CBCCTTSCEEEEEESTTSCCEESSCTTCCSEEEETTEEEEEEEEEEEECTTS
T ss_pred cCCCCCccccccCCCCeEEEEe-CCCC-CCCCCCCceEEEEeccccchhhCCCccccccccCCCCEEEecCCEEEEcCCC
Confidence 4444457899999999999998 5443 456678899999999999999999999988777777 99999999999999
Q ss_pred cEEEEeccCCeeEcCCCeeecchhHHHHHhcC-cCcceEEEEecCCCC----eEEEEEEcChhhHHHHHHHCCCCCcHHH
Q 006115 508 VVKIIDRKKNLIKISQGEYVALEYLENVYCVA-PIIEDIWVYGDSLKS----MLVAVVVPCEEDTKKWAYSNGHAGSFLE 582 (660)
Q Consensus 508 ~l~~~GR~~d~i~~~~G~~v~~~~iE~~l~~~-p~V~~~~v~~~~~~~----~~~a~v~~~~~~~~~~~~~~~~~~~~~~ 582 (660)
+|+++||.||+||+ +|++|+|.+||++|.+| |.+.+++|++.+++. .+++++........ .++..
T Consensus 419 ~l~~~GR~dd~Ik~-~G~~v~p~eIE~~l~~~~~~~~~~~v~~~~~~~~~~~~~~~~v~~~~~~~~---------~~~~~ 488 (562)
T 3ite_A 419 SILFLGRKDEQVKV-RGQRLELGEVSEVIRSLSPTDIDVVTLLLNHPGTSKQFLVSFVASSGAAVR---------GELRW 488 (562)
T ss_dssp CEEEEEEC------------------------------------------------------------------------
T ss_pred eEEEEccccCEEeE-CcEEECHHHHHHHHHhcCCCceeEEEEEecCCCCcceEEEEEEeccccccc---------ccccc
Confidence 99999999999996 89999999999999998 888899888766542 34444433322100 00000
Q ss_pred HhccHHHHHHHHHHHHHHHHHCCCCCceeeeEEEEecCCCCCCCCccc-cccccchHHHHHHHHH-HHHHHHhh
Q 006115 583 LCSLVQLQNYILSELKNAAERNKLRGFEHIKGVILDPRPFDMERDLVT-ATLKKKRNKLLIYYQV-EIDQLYEK 654 (660)
Q Consensus 583 ~~~~~~~~~~~~~~l~~~~~~~~l~~~~~p~~i~~~~~~~~~~~~P~t-~~GKv~R~~l~~~~~~-~l~~~y~~ 654 (660)
. .+-...+.++|+++++ .+||.|++|+.|++++ .+|+| ++||++|++|++++++ ...+++..
T Consensus 489 -~--~~~~~~~~~~l~~~~~-~~L~~y~~P~~i~~v~------~lP~t~~~GKi~r~~L~~~~~~~~~~~~~~~ 552 (562)
T 3ite_A 489 -I--NENYKEINNSLRQACE-QTLPAYMVPDFIIPIS------FIPLRDTSAKTDAKALEHMFHTLSLGELFGE 552 (562)
T ss_dssp --------------------------------------------------------------------------
T ss_pred -c--ccchhhHHHHHHHHHH-hhCCcccCCcEEEEec------cCCCCCCCCcchHHHHHHHHhccCHHHHhcc
Confidence 0 0111223456666665 7899999999999874 46998 8999999999999975 34455543
No 29
>3kxw_A Saframycin MX1 synthetase B; fatty acid AMP ligase, SGX, acyl adenylate, structural genom 2, protein structure initiative; HET: 1ZZ; 1.85A {Legionella pneumophila subsp} PDB: 3lnv_A*
Probab=100.00 E-value=5.4e-68 Score=592.73 Aligned_cols=503 Identities=17% Similarity=0.194 Sum_probs=393.9
Q ss_pred CCCcHHHHHHHHHHhCCCCCceeeeccccCCCCCceEEeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEeCChhhHHHHHH
Q 006115 40 DLNTAWDIFSMSVQKYPGNRMLGWRPFVDGKFGPYVWKTYKEVYEEVLQIVSALRASGAEPGCRVGIYGANCPQWVEAME 119 (660)
Q Consensus 40 ~~~ti~~~l~~~a~~~pd~~a~~~~~~~~~~~~~~~~~Ty~el~~~~~~lA~~L~~~gv~~gd~V~l~~~n~~~~~~~~l 119 (660)
...|+.++|.++|+++||++|+++. ++ +..+++||+||.++++++|++|.+.|+++||+|+++++|++++++++|
T Consensus 9 ~~~tl~~~l~~~a~~~p~~~a~~~~---~~--~~~~~~Ty~eL~~~~~~lA~~L~~~gv~~gd~V~i~~~~~~~~~~~~l 83 (590)
T 3kxw_A 9 QCQSLVDVVRLRALHSPNKKSCTFL---NK--ELEETMTYEQLDQHAKAIAATLQAEGAKPGDRVLLLFAPGLPLIQAFL 83 (590)
T ss_dssp TCSSHHHHHHHHHHHCTTSEEEEEE---ET--TEEEEEEHHHHHHHHHHHHHHHHHTTCCTTCEEEEECCSSHHHHHHHH
T ss_pred CcccHHHHHHHHHHhCCCCeEEEEE---cC--CeeEEEcHHHHHHHHHHHHHHHHHcCCCCCCEEEEEcCCchhHHHHHH
Confidence 4578999999999999999999886 42 234789999999999999999999999999999999999999999999
Q ss_pred HHHhCCCeEeecCCCC---ChhhHHHHhhcccceEEEEccchhhhhhccccccccCccEEEEecCCcHHHHHHHhhCCce
Q 006115 120 ACNALSLICVPLYDTL---GPGAVNFILDHAEIDFVFVQDKKVKELLSPDCRSAQRLRVMVCFTSLTAEQKEMAVQTGIK 196 (660)
Q Consensus 120 A~~~~G~~~v~i~~~~---~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~ 196 (660)
||+++|++++|++|.. +.+++.++++.+++++++++......+.............+..+
T Consensus 84 A~~~~G~~~vpl~~~~~~~~~~~~~~~l~~~~~~~vi~~~~~~~~~~~~~~~~~~~~~~~~~~----------------- 146 (590)
T 3kxw_A 84 GCLYAGCIAVPIYPPAQEKLLDKAQRIVTNSKPVIVLMIADHIKKFTADELNTNPKFLKIPAI----------------- 146 (590)
T ss_dssp HHHHTTCEEEEECCCCSHHHHHHHHHHHHHHCCSEEEECHHHHHHHCC-----CCEETTEEEE-----------------
T ss_pred HHHHhCcEEEEecCCCchHHHHHHHHHHHhCCCCEEEeCHHHHHHHHHhhhhhccccccccee-----------------
Confidence 9999999999999987 45789999999999999999887765543221111111111111
Q ss_pred eeeHHHHHhcCccCCccCCCCCCCCeEEEEecCCCCCCCceeeeccHhHHHHhhhcccccccccCCCCCCcEEEEecChh
Q 006115 197 PYSWDEFLHLGKVNEMEILPPQPFNICTIMYTSGTSGDPKGVVLTHETIATFVSGVDLFLDQFEDKMTVDDVYLSFLPLA 276 (660)
Q Consensus 197 ~~~~~~~~~~~~~~~~~~~~~~~~~~a~i~~TSGTTG~pK~v~~th~~l~~~~~~~~~~~~~~~~~~~~~d~~l~~~p~~ 276 (660)
..+.+.... ..........++++++|+|||||||.||+|++||+++++.+......+ ++.++|++++++|++
T Consensus 147 --~~~~~~~~~-~~~~~~~~~~~~d~a~i~~TSGTTG~PKgV~~th~~l~~~~~~~~~~~-----~~~~~d~~l~~~p~~ 218 (590)
T 3kxw_A 147 --ALESIELNR-SSSWQPTSIKSNDIAFLQYTSGSTMHPKGVMVSHHNLLDNLNKIFTSF-----HMNDETIIFSWLPPH 218 (590)
T ss_dssp --EGGGCCGGG-GGGCCCCCCCTTSEEEEEECSSCSSSCCEEEEEHHHHHHHHHHHHHHT-----TCCTTCEEEECSCTT
T ss_pred --echhccccc-cccCCCCCCCCCCeEEEEeCcCCCCCceEEEeeHHHHHHHHHHHHHhh-----CCCCcCeEEEecCCC
Confidence 111111100 112223456789999999999999999999999999999999887777 889999999999999
Q ss_pred hHHHHHH-HHHHhhcCcEEEEecC-----ChHHHHHHhhhhcCeEEEechHHHHHHHHHHHHHHHhhchHHHHHHHHHHH
Q 006115 277 HILDRVI-EEYFFRRGASVGYYHG-----DLNALRDDLMELKPTLLAGVPRVFEKIHEGIKKALEELRPLRRRIFDALYK 350 (660)
Q Consensus 277 ~~~g~~~-~~~~l~~G~~~v~~~~-----~~~~~~~~i~~~~~t~l~~~p~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~ 350 (660)
|.+|+.. ++.+++.|+++++.+. ++..+++.++++++|++.++|.++..+++.+...
T Consensus 219 h~~g~~~~~~~~l~~G~~~v~~~~~~~~~~~~~~~~~i~~~~~t~~~~~p~~~~~l~~~~~~~----------------- 281 (590)
T 3kxw_A 219 HDMGLIGCILTPIYGGIQAIMMSPFSFLQNPLSWLKHITKYKATISGSPNFAYDYCVKRIREE----------------- 281 (590)
T ss_dssp SHHHHHTTTHHHHHHTCEEEECCHHHHHHCTHHHHHHHHHHTCSEEEECTHHHHHHHHHCCGG-----------------
T ss_pred cchhhHHHHHHHHhcCceEEEeCHHHHHHCHHHHHHHHHHhCCeeecCChhHHHHHHHHhhhh-----------------
Confidence 9999986 7788999999999864 7899999999999999999999998886532111
Q ss_pred HHHHHHhcCCCCCCcchhHHHHHHHHHHHHhCCcEeEEEEccCCCCHHHHHHHHHhcC------CceeeecCCCCCCCce
Q 006115 351 YKLAWMNMGYKQREASPLADLLAFRKVKARLGGRLRLVISGGAPLSTEVEEFLRVTCC------AFLVQGYGLTETCGPT 424 (660)
Q Consensus 351 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~slr~v~~~G~~l~~~~~~~~~~~~~------~~v~~~YG~tE~~~~~ 424 (660)
.....+ .++||.+++||+++++++.+.+.+.++ .++++.||+||+++++
T Consensus 282 -----------------~~~~~~--------l~~lr~~~~gg~~l~~~~~~~~~~~~~~~g~~~~~~~~~YG~TE~~~~~ 336 (590)
T 3kxw_A 282 -----------------KKEGLD--------LSSWVTAFNGAEPVREETMEHFYQAFKEFGFRKEAFYPCYGLAEATLLV 336 (590)
T ss_dssp -----------------GGTTCC--------CTTCCEEEECSSCCCHHHHHHHHHHHGGGTCCGGGEEEEEECGGGSSEE
T ss_pred -----------------hccCCC--------chhhHHHhhCCCCCCHHHHHHHHHHHHHcCCCcccccccccccccccee
Confidence 011111 249999999999999999999988873 4799999999999887
Q ss_pred ecccCC--------------------------CccccCccCCCccCeeEEeeecCCCCCCCCCCCCCceEEEccCCcccc
Q 006115 425 TVCFPD--------------------------EMCMVGTAGPVSVYSELRLEEVPEMGYSPLDDPPCGEVCVRGKTLFSG 478 (660)
Q Consensus 425 ~~~~~~--------------------------~~~~~~~~G~~~~~~~v~iv~~~~~~~~~~~~g~~GEi~v~g~~~~~g 478 (660)
+..... ......++|.|+++ ++|+| +++ ..+++.|+.|||+|+||+++.|
T Consensus 337 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~p~~~--v~i~d-~~~-~~~~~~g~~GEl~v~g~~v~~G 412 (590)
T 3kxw_A 337 TGGTPGSSYKTLTLAKEQFQDHRVHFADDNSPGSYKLVSSGNPIQE--VKIID-PDT-LIPCDFDQVGEIWVQSNSVAKG 412 (590)
T ss_dssp EECCTTSCCCEEEECSCCCSSSBCCBCCTTCTTCEEEECCCEESSE--EEEEC-TTT-CCBCCTTBCEEEEEESTTSCCC
T ss_pred ecccCCCCceeeeecHHHHhcCceeeccCCCCCcceEeccCCCCCC--eEEEc-CCC-CcCCCCCCEEEEEEeCCccccc
Confidence 754321 11233678999988 78888 543 3566678899999999999999
Q ss_pred cCCCchhhhhcccC-------C--ccccCceEEECCCCcEEEEeccCCeeEcCCCeeecchhHHHHH-hcCcCcc--eEE
Q 006115 479 YYKNPDLTRESIID-------G--WFHTGDIGQILPNGVVKIIDRKKNLIKISQGEYVALEYLENVY-CVAPIIE--DIW 546 (660)
Q Consensus 479 y~~~~~~~~~~f~~-------g--~~~TGDl~~~~~~G~l~~~GR~~d~i~~~~G~~v~~~~iE~~l-~~~p~V~--~~~ 546 (660)
|+++++.|.+.|.+ | ||+|||+|++| +|.|+++||.||+||+ +|++|+|.+||++| ..+|.|. +|+
T Consensus 413 Y~~~p~~t~~~f~~~~~~~~~g~~~~~TGDlg~~d-dG~l~~~GR~dd~Ik~-~G~~v~p~eIE~~l~~~~~~v~~~~~~ 490 (590)
T 3kxw_A 413 YWNQPEETRHAFAGKIKDDERSAIYLRTGDLGFLH-ENELYVTGRIKDLIII-YGKNHYPQDIEFSLMHSPLHHVLGKCA 490 (590)
T ss_dssp BTTCHHHHHHHHCBCCTTC---CCBEEEEEEEEEE-TTEEEEEEESSCHHHH-HHHTTHHHHHHHHHHHSGGGGGEEEEE
T ss_pred ccCChhHHHHHHhccccCCCCCCcEEecCcEEEEE-CCEEEEEcCccceEEE-CCEecCHHHHHHHHHhcCccccCccEE
Confidence 99999999999943 5 99999999999 9999999999999997 89999999999999 8899998 799
Q ss_pred EEecCCC--CeEEEEEEcChhhHHHHHHHCCCCCcHHHHhccHHHHHHHHHHHHHHHHHCCCCCceeee-EEEEecCCCC
Q 006115 547 VYGDSLK--SMLVAVVVPCEEDTKKWAYSNGHAGSFLELCSLVQLQNYILSELKNAAERNKLRGFEHIK-GVILDPRPFD 623 (660)
Q Consensus 547 v~~~~~~--~~~~a~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~l~~~~~p~-~i~~~~~~~~ 623 (660)
|++.+++ ..++++++..++.. .+ .+.+++.+++.+.+.. .|++|. .+.+++
T Consensus 491 v~~~~~~~~~~~~~~v~~~~~~~----------~~----~~~~~l~~~l~~~l~~--------~~~~p~~~i~~v~---- 544 (590)
T 3kxw_A 491 AFVIQEEHEYKLTVMCEVKNRFM----------DD----VAQDNLFNEIFELVYE--------NHQLEVHTIVLIP---- 544 (590)
T ss_dssp EEEEEETTEEEEEEEEEESCTTC----------CH----HHHHHHHHHHHHHHHH--------HHSCCCCEEEEEE----
T ss_pred EEEecCCCCceEEEEEEeccccc----------cc----hhHHHHHHHHHHHHHH--------HcCCceeEEEEEC----
Confidence 8886544 47788888765420 00 0122333444433322 144443 455553
Q ss_pred CCCCccccccccchHHHHHHHHH
Q 006115 624 MERDLVTATLKKKRNKLLIYYQV 646 (660)
Q Consensus 624 ~~~~P~t~~GKv~R~~l~~~~~~ 646 (660)
++.+|+|++||++|++|+++|.+
T Consensus 545 ~~~lP~t~sGKi~R~~L~~~~~~ 567 (590)
T 3kxw_A 545 LKAMPHTTSGKIRRNFCRKHLLD 567 (590)
T ss_dssp TTCSCCCSCHHHHHHHHHHHHHH
T ss_pred CCccCcCCCcHHHHHHHHHHHHc
Confidence 25679999999999999999865
No 30
>2vsq_A Surfactin synthetase subunit 3; ligase, peptidyl carrier protein, ligase phosphoprotein, TER module, phosphopantetheine; 2.60A {Bacillus subtilis}
Probab=100.00 E-value=5.5e-66 Score=622.00 Aligned_cols=477 Identities=20% Similarity=0.229 Sum_probs=395.3
Q ss_pred CCcHHHHHHHHHHhCCCCCceeeeccccCCCCCceEEeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEeCChhhHHHHHHH
Q 006115 41 LNTAWDIFSMSVQKYPGNRMLGWRPFVDGKFGPYVWKTYKEVYEEVLQIVSALRASGAEPGCRVGIYGANCPQWVEAMEA 120 (660)
Q Consensus 41 ~~ti~~~l~~~a~~~pd~~a~~~~~~~~~~~~~~~~~Ty~el~~~~~~lA~~L~~~gv~~gd~V~l~~~n~~~~~~~~lA 120 (660)
..++.++|.++++++||++|+++. + +++||+||.++++++|++|.+.|+++|++|+|+++|++++++++||
T Consensus 463 ~~~l~~~~~~~~~~~p~~~Av~~~---~------~~lTY~eL~~~a~~lA~~L~~~Gv~~g~~V~i~~~~s~~~vv~~la 533 (1304)
T 2vsq_A 463 TKPLTYWFKEAVNANPDAPALTYS---G------QTLSYRELDEEANRIARRLQKHGAGKGSVVALYTKRSLELVIGILG 533 (1304)
T ss_dssp CCCHHHHHHHHHHHCTTSEEEESS---S------CEEEHHHHHHHHHHHHHHHHHTTCCTTCEEEECCCSSHHHHHHHHH
T ss_pred CCCHHHHHHHHHHhCCCCeEEEEC---C------eeEcHHHHHHHHHHHHHHHHhcCcCCcCEEEEEeCCCHHHHHHHHH
Confidence 378999999999999999999875 3 5899999999999999999999999999999999999999999999
Q ss_pred HHhCCCeEeecCCCCChhhHHHHhhcccceEEEEccchhhhhhccccccccCccEEEEecCCcHHHHHHHhhCCceeeeH
Q 006115 121 CNALSLICVPLYDTLGPGAVNFILDHAEIDFVFVQDKKVKELLSPDCRSAQRLRVMVCFTSLTAEQKEMAVQTGIKPYSW 200 (660)
Q Consensus 121 ~~~~G~~~v~i~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~ 200 (660)
|+++|++++|++|.++.+++.++|+.+++++++++......+.. ++.....+.+++..
T Consensus 534 ilkaG~~~vpldp~~p~~rl~~il~~~~~~~vl~~~~~~~~~~~-----~~~~~~~~~~~~~~----------------- 591 (1304)
T 2vsq_A 534 VLKAGAAYLPVDPKLPEDRISYMLADSAAACLLTHQEMKEQAAE-----LPYTGTTLFIDDQT----------------- 591 (1304)
T ss_dssp HHHTTCEEEECCTTSCHHHHHHHHHHHTCCEEEECSTTCTTSTT-----CCCCSEEEESSCGG-----------------
T ss_pred HHHHCCEEEEECCCCHHHHHHHHHHHcCCCEEEECcchhhhhhc-----cCCCCcEEEecccc-----------------
Confidence 99999999999999999999999999999999999875443211 11122233333211
Q ss_pred HHHHhcCccCCccCCCCCCCCeEEEEecCCCCCCCceeeeccHhHHHHhhhcccccccccCCCCCCcEEEEecChhhHHH
Q 006115 201 DEFLHLGKVNEMEILPPQPFNICTIMYTSGTSGDPKGVVLTHETIATFVSGVDLFLDQFEDKMTVDDVYLSFLPLAHILD 280 (660)
Q Consensus 201 ~~~~~~~~~~~~~~~~~~~~~~a~i~~TSGTTG~pK~v~~th~~l~~~~~~~~~~~~~~~~~~~~~d~~l~~~p~~~~~g 280 (660)
.. .. ....+.....+++++|++|||||||.||||+++|+++.+.. .....+ +++++|+++...|+.|..+
T Consensus 592 -~~-~~--~~~~~~~~~~~~~~ayiiyTSGSTG~PKgV~~~h~~l~~~~-~~~~~~-----~~~~~d~~l~~~~~~fd~~ 661 (1304)
T 2vsq_A 592 -RF-EE--QASDPATAIDPNDPAYIMYTSGTTGKPKGNITTHANIQGLV-KHVDYM-----AFSDQDTFLSVSNYAFDAF 661 (1304)
T ss_dssp -GG-GS--CSSCCCCCCCTTSEEEEEEECCSSSSCEEEEEEHHHHHHHH-SSCCSS-----CCCTTCEEEECSCTTSTHH
T ss_pred -cc-cc--ccCCCCCCCCCCCeEEEEeCCCCCCCCCEEEEehHHHHHHH-HHHHhc-----CCCCCCEEEEECCccHHHH
Confidence 00 00 11112234578999999999999999999999999998763 333444 7889999999999999888
Q ss_pred HHHHHHHhhcCcEEEEecC----ChHHHHHHhhhhcCeEEEechHHHHHHHHHHHHHHHhhchHHHHHHHHHHHHHHHHH
Q 006115 281 RVIEEYFFRRGASVGYYHG----DLNALRDDLMELKPTLLAGVPRVFEKIHEGIKKALEELRPLRRRIFDALYKYKLAWM 356 (660)
Q Consensus 281 ~~~~~~~l~~G~~~v~~~~----~~~~~~~~i~~~~~t~l~~~p~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 356 (660)
...++.++..|+++++.+. ++..+.+.++++++|+++++|+++..+.+....
T Consensus 662 ~~~~~~~l~~G~~l~~~~~~~~~~~~~l~~~i~~~~vt~~~~~p~~~~~l~~~~~~------------------------ 717 (1304)
T 2vsq_A 662 TFDFYASMLNAARLIIADEHTLLDTERLTDLILQENVNVMFATTALFNLLTDAGED------------------------ 717 (1304)
T ss_dssp HHHHHHHHTTTCEEEECCGGGTTCHHHHHHHHHHHTCCEEEEEHHHHHHHHHHCSH------------------------
T ss_pred HHHHHHHHHcCCEEEECChhhcCCHHHHHHHHHHcCCcEEEccHHHHHHHHhhchh------------------------
Confidence 8788899999999999874 889999999999999999999999988642100
Q ss_pred hcCCCCCCcchhHHHHHHHHHHHHhCCcEeEEEEccCCCCHHHHHHHHHhc-CCceeeecCCCCCCCceecccCCC---c
Q 006115 357 NMGYKQREASPLADLLAFRKVKARLGGRLRLVISGGAPLSTEVEEFLRVTC-CAFLVQGYGLTETCGPTTVCFPDE---M 432 (660)
Q Consensus 357 ~~~~~~~~~~~~~~~~~~~~~~~~~~~slr~v~~~G~~l~~~~~~~~~~~~-~~~v~~~YG~tE~~~~~~~~~~~~---~ 432 (660)
.+ ++||.+++|||++++++.+.+.+.+ ++.++|.||+||++++++...... .
T Consensus 718 ----------------~~--------~~lr~~~~gGe~l~~~~~~~~~~~~~~~~l~n~YG~TE~~~~~~~~~~~~~~~~ 773 (1304)
T 2vsq_A 718 ----------------WM--------KGLRCILFGGERASVPHVRKALRIMGPGKLINCYGPTEGTVFATAHVVHDLPDS 773 (1304)
T ss_dssp ----------------HH--------HTCSEEEEESSCCCHHHHHHHHHHHCTTCEEEEECCGGGSSCSEEEECCCCCSS
T ss_pred ----------------cC--------CCccEEEEecCCCCHHHHHHHHHhCCCCEEEEeEChhHHhHHheeeeccCcccc
Confidence 01 2899999999999999999888777 478999999999998776654322 2
Q ss_pred cccCccCCCccCeeEEeeecCCCCCCCCCCCCCceEEEccCCcccccCCCchhhhhccc-------CCccccCceEEECC
Q 006115 433 CMVGTAGPVSVYSELRLEEVPEMGYSPLDDPPCGEVCVRGKTLFSGYYKNPDLTRESII-------DGWFHTGDIGQILP 505 (660)
Q Consensus 433 ~~~~~~G~~~~~~~v~iv~~~~~~~~~~~~g~~GEi~v~g~~~~~gy~~~~~~~~~~f~-------~g~~~TGDl~~~~~ 505 (660)
....++|+|+++++++|+| +++. +++.|+.|||+|+|+++++||+++++.|.+.|. ++||+|||+|++++
T Consensus 774 ~~~~~iG~p~~~~~~~i~d-~~~~--~~p~G~~GEl~i~G~~v~~GY~~~p~~T~~~f~~~p~~~g~~~yrTGDl~~~~~ 850 (1304)
T 2vsq_A 774 ISSLPIGKPISNASVYILN-EQSQ--LQPFGAVGELCISGMGVSKGYVNRADLTKEKFIENPFKPGETLYRTGDLARWLP 850 (1304)
T ss_dssp CSSCCCBEECTTEEEEEEC-TTSC--BCCTTCCEEEEEEETTCCCCBTTCHHHHHHHEEECTTSTTCEEEEEEEEEEECT
T ss_pred CCCCCCceeeCCCEEEEEC-CCcC--CCCCCCceEEEEeccccCccccCCcccchhhhccCCCCCCCeeEecCCeEEEcC
Confidence 2336799999999999999 6554 556678999999999999999999999999992 34999999999999
Q ss_pred CCcEEEEeccCCeeEcCCCeeecchhHHHHHhcCcCcceEEEEecCCC---CeEEEEEEcChhhHHHHHHHCCCCCcHHH
Q 006115 506 NGVVKIIDRKKNLIKISQGEYVALEYLENVYCVAPIIEDIWVYGDSLK---SMLVAVVVPCEEDTKKWAYSNGHAGSFLE 582 (660)
Q Consensus 506 ~G~l~~~GR~~d~i~~~~G~~v~~~~iE~~l~~~p~V~~~~v~~~~~~---~~~~a~v~~~~~~~~~~~~~~~~~~~~~~ 582 (660)
||.|+++||.||+||+ +|++|+|.|||++|.+||+|.+|+|++.++. ..++|+++.....
T Consensus 851 dG~l~~~GR~d~qvki-~G~rie~~eIE~~l~~~p~V~~a~V~~~~~~~~~~~l~a~vv~~~~~---------------- 913 (1304)
T 2vsq_A 851 DGTIEYAGRIDDQVKI-RGHRIELEEIEKQLQEYPGVKDAVVVADRHESGDASINAYLVNRTQL---------------- 913 (1304)
T ss_dssp TSCEEEEEEGGGEEEE-TTEEEEHHHHHHHHHHSSSCCEEEEEEECCSSSCCEEEEEEECSSSS----------------
T ss_pred CCeEEEEcCCCCEEEE-CCEeeCHHHHHHHHHhCCCCceEEEEEEecCCCCEEEEEEEeCCCCC----------------
Confidence 9999999999999998 7999999999999999999999999986644 4799999876532
Q ss_pred HhccHHHHHHHHHHHHHHHHHCCCCCceeeeEEEEecCCCCCCCCccccccccchHHHHHH
Q 006115 583 LCSLVQLQNYILSELKNAAERNKLRGFEHIKGVILDPRPFDMERDLVTATLKKKRNKLLIY 643 (660)
Q Consensus 583 ~~~~~~~~~~~~~~l~~~~~~~~l~~~~~p~~i~~~~~~~~~~~~P~t~~GKv~R~~l~~~ 643 (660)
+. ++|+++++ ..||.|++|+.++++ +.+|+|++||++|++|.+.
T Consensus 914 --~~--------~~l~~~l~-~~Lp~ymvP~~~~~l------~~lP~t~~GKidR~~L~~~ 957 (1304)
T 2vsq_A 914 --SA--------EDVKAHLK-KQLPAYMVPQTFTFL------DELPLTTNGKVNKRLLPKP 957 (1304)
T ss_dssp --CH--------HHHHHHHH-HHSCGGGSCSEEEEE------SCCCCCSSCSSCCSCCCCC
T ss_pred --CH--------HHHHHHHH-HhChHhhhccEEEEe------cccCCCCCcccCHhhcCCc
Confidence 11 22333443 679999999999998 4469999999999988643
No 31
>3t5a_A Long-chain-fatty-acid--AMP ligase FADD28; acetyl-COA synthetase like fold, AMP-binding; 2.05A {Mycobacterium tuberculosis} PDB: 3e53_A
Probab=100.00 E-value=4.1e-56 Score=484.21 Aligned_cols=400 Identities=16% Similarity=0.190 Sum_probs=312.4
Q ss_pred CCcHHHHHHHHHHhCCCCCceeeeccccCCCCCceEEeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEeCChhhHHHHHHH
Q 006115 41 LNTAWDIFSMSVQKYPGNRMLGWRPFVDGKFGPYVWKTYKEVYEEVLQIVSALRASGAEPGCRVGIYGANCPQWVEAMEA 120 (660)
Q Consensus 41 ~~ti~~~l~~~a~~~pd~~a~~~~~~~~~~~~~~~~~Ty~el~~~~~~lA~~L~~~gv~~gd~V~l~~~n~~~~~~~~lA 120 (660)
..++.++|.++|+++||++|+++....++..+.++++||+||.++++++|++|++.|+ +||+|+++++|++++++++||
T Consensus 23 ~~tl~~~l~~~a~~~pd~~Al~~~~~~~~~~g~~~~~Ty~el~~~~~~lA~~L~~~g~-~gd~V~i~~~n~~e~~~~~lA 101 (480)
T 3t5a_A 23 VRSLPAALRACARLQPHDPAFTFMDYEQDWDGVAITLTWSQLYRRTLNVAQELSRCGS-TGDRVVISAPQGLEYVVAFLG 101 (480)
T ss_dssp -CCHHHHHHHHHHHSTTSEEEEEEETTTCTTCEEEEEEHHHHHHHHHHHHHHHTTSSC-TTCEEEEECCSSHHHHHHHHH
T ss_pred cccHHHHHHHHHHhCCCCceEEEecccCCCCCceEEEcHHHHHHHHHHHHHHHHhcCC-CCCEEEEEcCCcHHHHHHHHH
Confidence 5789999999999999999999871111334455899999999999999999999996 999999999999999999999
Q ss_pred HHhCCCeEeecCC---CCChhhHHHHhhcccceEEEEccchhhhhhcccccccc-CccEEEEecCCcHHHHHHHhhCCce
Q 006115 121 CNALSLICVPLYD---TLGPGAVNFILDHAEIDFVFVQDKKVKELLSPDCRSAQ-RLRVMVCFTSLTAEQKEMAVQTGIK 196 (660)
Q Consensus 121 ~~~~G~~~v~i~~---~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~~~~~~-~~~~i~~~~~~~~~~~~~~~~~~~~ 196 (660)
|+++|++++|+++ .++.+++.++|+.++++++|++......+......... ....++..+...
T Consensus 102 ~~~~G~v~vpl~~~~~~~~~~~l~~il~~~~~~~vi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------------- 168 (480)
T 3t5a_A 102 ALQAGRIAVPLSVPQGGVTDERSDSVLSDSSPVAILTTSSAVDDVVQHVARRPGESPPSIIEVDLLD------------- 168 (480)
T ss_dssp HHHTTCEEEEECSCCSCTTCCHHHHHHHHHCCSEEEECTTTHHHHHHTCC------CCEEEEGGGSC-------------
T ss_pred HHHhCcEEEeeCCCCccchHHHHHHHHHhCCCCEEEeChhHHHHHHHHHhccccccccceeEecccc-------------
Confidence 9999999999999 78899999999999999999999877655443221100 011222222110
Q ss_pred eeeHHHHHhcCccCCccCCCCCCCCeEEEEecCCCCCCCceeeeccHhHHHHhhhcccccccccCCCCC------CcEEE
Q 006115 197 PYSWDEFLHLGKVNEMEILPPQPFNICTIMYTSGTSGDPKGVVLTHETIATFVSGVDLFLDQFEDKMTV------DDVYL 270 (660)
Q Consensus 197 ~~~~~~~~~~~~~~~~~~~~~~~~~~a~i~~TSGTTG~pK~v~~th~~l~~~~~~~~~~~~~~~~~~~~------~d~~l 270 (660)
. ............++++++|+|||||||.||+|++||+++++.+......+ .+.. +++++
T Consensus 169 --------~-~~~~~~~~~~~~~~d~a~i~~TSGTTG~PKgV~~th~~l~~~~~~~~~~~-----~~~~~~~~~~~d~~l 234 (480)
T 3t5a_A 169 --------L-DAPNGYTFKEDEYPSTAYLQYTSGSTRTPAGVVMSHQNVRVNFEQLMSGY-----FADTDGIPPPNSALV 234 (480)
T ss_dssp --------T-TCC---CCCCSSCCSEEEEECC------CCCEEEEHHHHHHHHHHHHHHH-----CTTTTTCCCTTEEEE
T ss_pred --------c-ccccCCCCCCCCCCceEEEEecCCCCCCCcEEEEeHHHHHHHHHHHHHHh-----ccccccCCCCCCeEE
Confidence 0 00112233445788999999999999999999999999999888876666 4555 89999
Q ss_pred EecChhhHHHHHH-HHHHhhcCcEEEEecC-----ChHHHHHHhhhhcCeEEEechHHHHHHHHHHHHHHHhhchHHHHH
Q 006115 271 SFLPLAHILDRVI-EEYFFRRGASVGYYHG-----DLNALRDDLMELKPTLLAGVPRVFEKIHEGIKKALEELRPLRRRI 344 (660)
Q Consensus 271 ~~~p~~~~~g~~~-~~~~l~~G~~~v~~~~-----~~~~~~~~i~~~~~t~l~~~p~~~~~l~~~~~~~~~~~~~~~~~~ 344 (660)
+++|++|.+|+.. ++.+++.|+++++.+. ++..+++.++++++| +.++|+++..++.....
T Consensus 235 ~~~pl~h~~g~~~~~~~~l~~G~~~v~~~~~~~~~~~~~~~~~i~~~~~t-~~~~p~~~~~l~~~~~~------------ 301 (480)
T 3t5a_A 235 SWLPFYHDMGLVIGICAPILGGYPAVLTSPVSFLQRPARWMHLMASDFHA-FSAAPNFAFELAARRTT------------ 301 (480)
T ss_dssp ECCCTTSTTHHHHHTHHHHHHTCCEEECCHHHHHHCTHHHHHHTTSSSEE-EEEECHHHHHHHHHHCC------------
T ss_pred EeCCCcCccHHHHHHHHHHHcCCceEEECHHHHHHCHHHHHHHHHhhcee-EeeChHHHHHHHHhhcC------------
Confidence 9999999999765 6788999999999863 899999999999999 88899988877543110
Q ss_pred HHHHHHHHHHHHhcCCCCCCcchhHHHHHHHHHHHHhCCcEeEEEEccCCCCHHHHHHHHHhcC------CceeeecCCC
Q 006115 345 FDALYKYKLAWMNMGYKQREASPLADLLAFRKVKARLGGRLRLVISGGAPLSTEVEEFLRVTCC------AFLVQGYGLT 418 (660)
Q Consensus 345 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~slr~v~~~G~~l~~~~~~~~~~~~~------~~v~~~YG~t 418 (660)
.+..... .+++||.+++||+++++++.+.+.+.++ +.+++.||+|
T Consensus 302 ---------------------~~~~~~~--------~l~~lr~i~~gG~~l~~~~~~~~~~~~~~~~~~~~~~~~~YG~T 352 (480)
T 3t5a_A 302 ---------------------DDDMAGR--------DLGNILTILSGSERVQAATIKRFADRFARFNLQERVIRPSYWLA 352 (480)
T ss_dssp ---------------------TGGGTTC--------CCTTCCEEEECCTTCCHHHHHHHHHHSGGGTCCGGGEEEEEEET
T ss_pred ---------------------ccccccc--------chhhhheeeecCCcCCHHHHHHHHHHHhhcCCChhhcccccccc
Confidence 0001111 1259999999999999999999998873 4799999999
Q ss_pred CCCCceecccCCC------------------------ccccCccCCCccCeeEEeeecCCCCCCCCCCCCCceEEEccCC
Q 006115 419 ETCGPTTVCFPDE------------------------MCMVGTAGPVSVYSELRLEEVPEMGYSPLDDPPCGEVCVRGKT 474 (660)
Q Consensus 419 E~~~~~~~~~~~~------------------------~~~~~~~G~~~~~~~v~iv~~~~~~~~~~~~g~~GEi~v~g~~ 474 (660)
|++..++...... .....++|+|++ ++++|+| ++++ .+++.|+.|||+|+|++
T Consensus 353 E~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~G~p~~-~~~~ivd-~~~g-~~~~~g~~GEl~v~g~~ 429 (480)
T 3t5a_A 353 EATVYVATSKPGQPPETVDFDTESLSAGHAKPCAGGGATSLISYMLPRS-PIVRIVD-SDTC-IECPDGTVGEIWVHGDN 429 (480)
T ss_dssp TTTEEEEECCTTSSCCEEEECHHHHHTTBCCCCCSSSCEEEECEECCSS-SEEEEEE-TTTT-EECCTTBCEEEEEESTT
T ss_pred ccceeEeecccCCCcceEEecHHHhccCceeecCCCCcceeeecCcccC-CEEEEEc-CCCC-cCCCCCCEEEEEEeCCc
Confidence 9998877654432 123468999999 9999999 5533 45567789999999999
Q ss_pred cccccCCCchhhhhcc------------cCCccccCceEEECCCCcEEEEec
Q 006115 475 LFSGYYKNPDLTRESI------------IDGWFHTGDIGQILPNGVVKIIDR 514 (660)
Q Consensus 475 ~~~gy~~~~~~~~~~f------------~~g~~~TGDl~~~~~~G~l~~~GR 514 (660)
++.||+++++.|.+.| .+|||+|||+|+++ ||+|+++||
T Consensus 430 v~~GY~~~pe~t~~~f~~~~~~~~~~~~~~~w~~TGDlg~~d-dG~l~~~GR 480 (480)
T 3t5a_A 430 VANGYWQKPDESERTFGGKIVTPSPGTPEGPWLRTGDSGFVT-DGKMFIIGR 480 (480)
T ss_dssp SCCCBTTBHHHHHHHHCBCCSSCCTTCCCCCBEEEEEEEEEE-TTEEEECC-
T ss_pred cccccccCcchhHHHHhhhhccccCCCCCCCeeeccceeeEE-CCEEEEeCC
Confidence 9999999999999998 35699999999997 999999998
No 32
>4gs5_A Acyl-COA synthetase (AMP-forming)/AMP-acid ligase protein; structural genomics, PSI-biology; 2.02A {Dyadobacter fermentans}
Probab=100.00 E-value=1.6e-49 Score=412.90 Aligned_cols=314 Identities=17% Similarity=0.124 Sum_probs=256.6
Q ss_pred CCCeEEEEecCCCCCCCceeeeccHhHHHHhhhcccccccccCCCCCCcEEEEecChhhHHHHHHHHHHhhcCcEEEEec
Q 006115 219 PFNICTIMYTSGTSGDPKGVVLTHETIATFVSGVDLFLDQFEDKMTVDDVYLSFLPLAHILDRVIEEYFFRRGASVGYYH 298 (660)
Q Consensus 219 ~~~~a~i~~TSGTTG~pK~v~~th~~l~~~~~~~~~~~~~~~~~~~~~d~~l~~~p~~~~~g~~~~~~~l~~G~~~v~~~ 298 (660)
.|++++|+|||||||.||+|++||+++.+.+..+...+ +++++|++++++|++|.+|+..++.++..|+++++.+
T Consensus 36 ~d~~a~Il~TSGTTG~PKgV~~th~~l~~~~~~~~~~~-----~~~~~d~~l~~~pl~h~~gl~~~~~~l~~g~~~~~~~ 110 (358)
T 4gs5_A 36 GGAREFVLHTSGSTGMPKPITVTRAQLAASAAMTGKAL-----SLGPGTRALVCLNVGYIAGLMMLVRGMELDWELTVTE 110 (358)
T ss_dssp HTCSEEEEEEECTTSSEEEEEEEHHHHHHHHHHHHHHT-----TCCTTCEEEECSCTTSHHHHHHHHHHHHHTCEEEEEC
T ss_pred CCCCEEEEECCcccccCcEEEEeHHHHHHHHHHHHHHh-----CCCCCCEEEEECChHHHHHHHHHHHHHHhCcEEEecC
Confidence 47899999999999999999999999999998887777 8899999999999999999988888999999998887
Q ss_pred CChHHHHHHhhhhcCeEEEechHHHHHHHHHHHHHHHhhchHHHHHHHHHHHHHHHHHhcCCCCCCcchhHHHHHHHHHH
Q 006115 299 GDLNALRDDLMELKPTLLAGVPRVFEKIHEGIKKALEELRPLRRRIFDALYKYKLAWMNMGYKQREASPLADLLAFRKVK 378 (660)
Q Consensus 299 ~~~~~~~~~i~~~~~t~l~~~p~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 378 (660)
. ....+..++++++|+++++|+++..|++... ...++
T Consensus 111 ~-~~~~~~~i~~~~~t~~~~~P~~l~~ll~~~~--------------------------------------~~~~l---- 147 (358)
T 4gs5_A 111 P-TANPLAGLDHADFDFVAMVPMQLQSILENSA--------------------------------------TSGQV---- 147 (358)
T ss_dssp C-CSCTTTTCSSCCCSEEEECHHHHHHHHHCTT--------------------------------------TGGGG----
T ss_pred c-cccHHHHHHHhCCeEEEcChHHHHHhhcccc--------------------------------------ccccC----
Confidence 4 2344678999999999999999998865311 00112
Q ss_pred HHhCCcEeEEEEccCCCCHHHHHHHHHhcCCceeeecCCCCCCCceecccCCCccccCccCCCccCeeEEeeecCCCCCC
Q 006115 379 ARLGGRLRLVISGGAPLSTEVEEFLRVTCCAFLVQGYGLTETCGPTTVCFPDEMCMVGTAGPVSVYSELRLEEVPEMGYS 458 (660)
Q Consensus 379 ~~~~~slr~v~~~G~~l~~~~~~~~~~~~~~~v~~~YG~tE~~~~~~~~~~~~~~~~~~~G~~~~~~~v~iv~~~~~~~~ 458 (660)
++||.+++||+++++++.+++++ +++++++.||+||++..++....+.... +++|.+.|++++.+.+
T Consensus 148 ----~~lr~v~~gG~~l~~~~~~~~~~-~~~~~~~~YG~TEt~~~~~~~~~~~~~~-g~~~~~~pgv~~~~~~------- 214 (358)
T 4gs5_A 148 ----DRLGKVLLGGAPVNHALAMQISD-LAMPVYQSYGMTETVSHVALKALNGPEA-SELYVFLPGIQYGVDE------- 214 (358)
T ss_dssp ----GGGCSEEECSSCCCHHHHHHHHT-CSSCEEEEEECGGGSSEEEEEECSSTTC-CSCEEECTTCEEEECT-------
T ss_pred ----CcceEEEEcccCCCchheecccc-cCceEEeccccccccceeeccccccccc-ceeeccCCCeEEEecC-------
Confidence 38999999999999999999987 5999999999999998877766554333 7889999999887654
Q ss_pred CCCCCCCceEEEccCCcccccCCCchhhhhcccCCccccCceEEECCCCcEEEEeccCCeeEcCCCeeecchhHHHHH--
Q 006115 459 PLDDPPCGEVCVRGKTLFSGYYKNPDLTRESIIDGWFHTGDIGQILPNGVVKIIDRKKNLIKISQGEYVALEYLENVY-- 536 (660)
Q Consensus 459 ~~~~g~~GEi~v~g~~~~~gy~~~~~~~~~~f~~g~~~TGDl~~~~~~G~l~~~GR~~d~i~~~~G~~v~~~~iE~~l-- 536 (660)
.|||+++|+.. .+|||+|||+|++|++| ++++||.||+||+ +|++|+|.+||++|
T Consensus 215 ------~Gel~~~g~~~---------------~~g~~~TGDlg~~d~~g-~~~~GR~dd~Ik~-~G~~v~p~eIE~~l~~ 271 (358)
T 4gs5_A 215 ------RGCLHISGAVT---------------NGQTVQTNDLVEIHGNA-FQWIGRADNVINS-GGVKIVLDQIDQRIAA 271 (358)
T ss_dssp ------TSEEEEESGGG---------------TTCCEEEEEEEEECSSE-EEEEEEGGGEEEE-TTEEEEHHHHHHHHHH
T ss_pred ------cCceEEecccc---------------cCcceecCCccccccCc-eEEcccccCeEEE-CCEEECHHHHHHHHHH
Confidence 59999998632 27899999999999888 6677999999996 89999999999877
Q ss_pred -hcCcCcceEEEE-ecCCC---CeEEEEEEcChhhHHHHHHHCCCCCcHHHHhccHHHHHHHHHHHHHHHHHCCCCCcee
Q 006115 537 -CVAPIIEDIWVY-GDSLK---SMLVAVVVPCEEDTKKWAYSNGHAGSFLELCSLVQLQNYILSELKNAAERNKLRGFEH 611 (660)
Q Consensus 537 -~~~p~V~~~~v~-~~~~~---~~~~a~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~l~~~~~ 611 (660)
.+||.|.+|+|+ +.+++ +.++|+|+..... . ..++|+++++ .+||.|++
T Consensus 272 ~~~~p~V~~a~vv~~~~d~~~ge~~~a~v~~~~~~---------------------~----~~~~l~~~l~-~~L~~~~~ 325 (358)
T 4gs5_A 272 VFHHLNIGNAFFCWWEPDAKLGQKLVLVIENAMPE---------------------A----LTERLTAEIR-SRVSTYEN 325 (358)
T ss_dssp HHHHHTCCCCEEEEEEEETTTEEEEEEEEESCCCH---------------------H----HHHHHHHHHH-HHSCGGGS
T ss_pred hccCCCccEEEEEEecCCccCCEEEEEEEECCCCC---------------------c----CHHHHHHHHH-hhCCCCCC
Confidence 468999998876 44433 3688888766532 1 1233444554 67999999
Q ss_pred eeEEEEecCCCCCCCCccccccccchHHHHHHHHHHH
Q 006115 612 IKGVILDPRPFDMERDLVTATLKKKRNKLLIYYQVEI 648 (660)
Q Consensus 612 p~~i~~~~~~~~~~~~P~t~~GKv~R~~l~~~~~~~l 648 (660)
|+.|++++ .+|+|++|||+|++|++++.+..
T Consensus 326 P~~i~~v~------~lP~t~~GKi~R~~L~~~l~e~~ 356 (358)
T 4gs5_A 326 PKHIYFAK------AFAKTQTDKIDKRATFQKLSDSS 356 (358)
T ss_dssp CSCEEEES------SCCBCTTSCBCHHHHHHHTC---
T ss_pred ceEEEEEC------CcCCCCCCChhHHHHHHHhhhhc
Confidence 99999984 45999999999999999876543
No 33
>3qov_A Phenylacetate-coenzyme A ligase; acetyl-COA synthetase-like, structural genomics, joint cente structural genomics, JCSG; HET: MSE ADP COA; 2.20A {Bacteroides thetaiotaomicron} PDB: 3s89_A*
Probab=100.00 E-value=1.2e-43 Score=380.56 Aligned_cols=334 Identities=17% Similarity=0.168 Sum_probs=248.7
Q ss_pred CCCC-CCeEEEEecCCCCCCCceeeeccHhHHHHhhhcccccccccCCCCCCcEEEEecChhhHHHHH-HHHHHhhcCcE
Q 006115 216 PPQP-FNICTIMYTSGTSGDPKGVVLTHETIATFVSGVDLFLDQFEDKMTVDDVYLSFLPLAHILDRV-IEEYFFRRGAS 293 (660)
Q Consensus 216 ~~~~-~~~a~i~~TSGTTG~pK~v~~th~~l~~~~~~~~~~~~~~~~~~~~~d~~l~~~p~~~~~g~~-~~~~~l~~G~~ 293 (660)
...+ +++++++|||||||.||+|++||+++.+.+..+...+.. .++.++|++++..|+.|..+.. ..+.++..|++
T Consensus 81 ~~~~~~~~a~i~~TSGTTG~PK~v~~th~~~~~~~~~~~~~~~~--~~~~~~d~~~~~~~~~~~~~~~~~~~~~l~~G~~ 158 (436)
T 3qov_A 81 AGDMKRDGVRIHSSSGTTGNPTVIVHSQHDLDSWANLVARCLYM--VGIRKTDVFQNSSGYGMFTGGLGFQYGAERLGCL 158 (436)
T ss_dssp CSCHHHHEEEEEECSCSSSCCCEEEEEHHHHHHHHHHHHHHHHH--TTCCTTSEEEECSCCTTCHHHHHHHHHHHHHTCE
T ss_pred cCCCcCCeEEEEECCCcCCCCeEEEECHHHHHHHHHHHHHHHHH--cCCCCCCEEEECcccccchhHHHHHHHHHHcCCE
Confidence 3455 899999999999999999999999998776665332221 1678999999999987655544 56777999999
Q ss_pred EEEecC-ChHHHHHHhhhhcCeEEEechHHHHHHHHHHHHHHHhhchHHHHHHHHHHHHHHHHHhcCCCCCCcchhHHHH
Q 006115 294 VGYYHG-DLNALRDDLMELKPTLLAGVPRVFEKIHEGIKKALEELRPLRRRIFDALYKYKLAWMNMGYKQREASPLADLL 372 (660)
Q Consensus 294 ~v~~~~-~~~~~~~~i~~~~~t~l~~~p~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 372 (660)
+++.+. ++..+++.|+++++|+++++|+++..|++.........
T Consensus 159 ~~~~~~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~~----------------------------------- 203 (436)
T 3qov_A 159 TVPAAAGNSKRQIKFISDFKTTALHAIPSYAIRLAEVFQEEGIDP----------------------------------- 203 (436)
T ss_dssp EECCCSCCHHHHHHHHHHHTCCEEECCHHHHHHHHHHHHHTTCCT-----------------------------------
T ss_pred EEeCCCCCHHHHHHHHHHHCCCEEEECHHHHHHHHHHHHHcCCCc-----------------------------------
Confidence 988865 89999999999999999999999999876543321000
Q ss_pred HHHHHHHHhCCcEeEEEEccCCCCHHHHHHHHHhcCCceeeecCCCCCCCceecccCCCccccCccCCCccCeeEEeeec
Q 006115 373 AFRKVKARLGGRLRLVISGGAPLSTEVEEFLRVTCCAFLVQGYGLTETCGPTTVCFPDEMCMVGTAGPVSVYSELRLEEV 452 (660)
Q Consensus 373 ~~~~~~~~~~~slr~v~~~G~~l~~~~~~~~~~~~~~~v~~~YG~tE~~~~~~~~~~~~~~~~~~~G~~~~~~~v~iv~~ 452 (660)
..++||.+++||+++++++.+.+++.+|+++++.||+||+++.++...... ....|.+.++++++|+|
T Consensus 204 --------~~~~lr~i~~gGe~l~~~~~~~~~~~~g~~v~~~YG~TE~~~~~~~~~~~~---~~g~~~~~~~~~v~i~d- 271 (436)
T 3qov_A 204 --------RETTLKTLVIGAEPHTDEQRRKIERMLNVKAYNSFGMTEMNGPGVAFECQE---QNGMHFWEDCYLVEIID- 271 (436)
T ss_dssp --------TSSSCCEEEEESSCCCHHHHHHHHHHHTSEEEEEEEEGGGTEEEEEEECTT---CSSEEECTTTEEEEEEC-
T ss_pred --------ccCCccEEEEeCCcCCHHHHHHHHHHhCccEEecCcchhhcCCeeEEecCC---CCeeEEccCceEEEEEE-
Confidence 014899999999999999999999999999999999999965422222211 12356677899999999
Q ss_pred CCCCCCCCCCCCCceEEEccCCcccccCCCchhhhhcccCCccccCceEEECCCC------c---EEEEeccCCeeEcCC
Q 006115 453 PEMGYSPLDDPPCGEVCVRGKTLFSGYYKNPDLTRESIIDGWFHTGDIGQILPNG------V---VKIIDRKKNLIKISQ 523 (660)
Q Consensus 453 ~~~~~~~~~~g~~GEi~v~g~~~~~gy~~~~~~~~~~f~~g~~~TGDl~~~~~~G------~---l~~~GR~~d~i~~~~ 523 (660)
++++ .+++.|+.|||+|+|. +...|.++||+|||+|+++++| . +++.||.||+|++ +
T Consensus 272 ~~~g-~~~~~g~~Gel~v~~~------------~~~~~~~~~y~TGDl~~~~~~gc~cG~~~~~il~i~GR~dd~ik~-~ 337 (436)
T 3qov_A 272 PETG-EPVPEGEIGELVLTTL------------DREMMPLIRYRTRDLTRILPGKCPCGRTHLRIDRIKGRSDDMFII-K 337 (436)
T ss_dssp TTTC-SBCSTTCCEEEEEEES------------SCCSSCCCSEEEEEEECEECSCCTTCCCSCEECCCCCBSSSCEEE-T
T ss_pred CCCC-CCCCCCCceEEEEecc------------CcCCceEEEEEcCCEEEEcCCCCCCCCCccccCcccCccCCEEEE-C
Confidence 4443 4566788999999983 2334568999999999999998 5 6999999999997 7
Q ss_pred CeeecchhHHHHHhcCcCcceEEEEecCC---CCeEEEEEEcChhhHHHHHHHCCCCCcHHHHhccHHHHHHHHHHHHHH
Q 006115 524 GEYVALEYLENVYCVAPIIEDIWVYGDSL---KSMLVAVVVPCEEDTKKWAYSNGHAGSFLELCSLVQLQNYILSELKNA 600 (660)
Q Consensus 524 G~~v~~~~iE~~l~~~p~V~~~~v~~~~~---~~~~~a~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~ 600 (660)
|++|+|.+||++|.+||+|.+++|++.++ .+.++|+|+++ +.. .++.. +.+++.+.+.+.|.++
T Consensus 338 G~~v~p~eiE~~l~~~p~v~~~~vv~~~~~~~~~~l~a~v~~~-~~~---------~~~~~---~~~~l~~~l~~~l~~~ 404 (436)
T 3qov_A 338 GVNIFPMQVEKILVQFPELGSNYLITLETVNNQDEMIVEVELS-DLS---------TDNYI---ELEKIRRDIIRQLKDE 404 (436)
T ss_dssp TEEECHHHHHHHHTTCTTEEEEEEEEEEEETTEEEEEEEEEEC-TTC---------CCCHH---HHHHHHHHHHHHHHHH
T ss_pred CEEECHHHHHHHHHhCcCcCCcEEEEEEcCCCCcEEEEEEEEc-Ccc---------ccchh---hHHHHHHHHHHHHHHh
Confidence 99999999999999999999999998664 34899999988 430 00000 0123444444444332
Q ss_pred HHHCCCCCceeeeEEEEecCCCCCCCCccccccccchH
Q 006115 601 AERNKLRGFEHIKGVILDPRPFDMERDLVTATLKKKRN 638 (660)
Q Consensus 601 ~~~~~l~~~~~p~~i~~~~~~~~~~~~P~t~~GKv~R~ 638 (660)
+ .+|..+.+++ ++.+|+|+ ||++|.
T Consensus 405 ~--------~~p~~i~~v~----~~~lP~t~-GKi~R~ 429 (436)
T 3qov_A 405 I--------LVTPKVKLVK----KGSLPQSE-GKAVRV 429 (436)
T ss_dssp H--------SSCCEEEEEC----TTCCC--------CE
T ss_pred c--------CCceEEEEeC----CCcccCcC-CcceEE
Confidence 2 4566788774 24679999 999985
No 34
>2y4o_A Phenylacetate-coenzyme A ligase; phenylacetic acid degradation pathway; HET: DLL; 1.90A {Burkholderia cenocepacia}
Probab=100.00 E-value=2.1e-43 Score=379.39 Aligned_cols=337 Identities=17% Similarity=0.141 Sum_probs=255.3
Q ss_pred CCCCCCeEEEEecCCCCCCCceeeeccHhHHHHhhhcccccccccCCCCCCcEEEEecCh-hhHHHHHHHHHHhhcCcEE
Q 006115 216 PPQPFNICTIMYTSGTSGDPKGVVLTHETIATFVSGVDLFLDQFEDKMTVDDVYLSFLPL-AHILDRVIEEYFFRRGASV 294 (660)
Q Consensus 216 ~~~~~~~a~i~~TSGTTG~pK~v~~th~~l~~~~~~~~~~~~~~~~~~~~~d~~l~~~p~-~~~~g~~~~~~~l~~G~~~ 294 (660)
...++++++++|||||||.||+|++||+++...+..+...+.. .++.++|++++.+|+ .|..++...+.++..|+++
T Consensus 88 ~~~~~~~~~i~~TSGTTG~PK~v~~t~~~~~~~~~~~~~~~~~--~~~~~~d~~l~~~~~~~~~~~~~~~~~~~~~G~~~ 165 (443)
T 2y4o_A 88 AVPREQVVRVHASSGTTGKPTVVGYTARDIDTWANVTARSIRA--AGGRPGDTLHNAFGYGLFTGGLGIHYGAERLGCMV 165 (443)
T ss_dssp SSCGGGCCEEEEECCSSSSCEEEEECHHHHHHHHHHHHHHHHH--TTCCTTCEEEECSCCSSSHHHHHHHHHHHHHTCEE
T ss_pred CCChhheEEEEECCCCCCCceEEecCHHHHHHHHHHHHHHHHH--cCCCCCCEEEEeccCcccccHHHHHHHHHHcCCEE
Confidence 4567899999999999999999999999988766554332211 168899999999998 5777776778888999999
Q ss_pred EEecC-ChHHHHHHhhhhcCeEEEechHHHHHHHHHHHHHHHhhchHHHHHHHHHHHHHHHHHhcCCCCCCcchhHHHHH
Q 006115 295 GYYHG-DLNALRDDLMELKPTLLAGVPRVFEKIHEGIKKALEELRPLRRRIFDALYKYKLAWMNMGYKQREASPLADLLA 373 (660)
Q Consensus 295 v~~~~-~~~~~~~~i~~~~~t~l~~~p~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 373 (660)
++.+. ++..+++.|+++++|+++++|+++..|++.........
T Consensus 166 ~~~~~~~~~~~~~~i~~~~~t~l~~~Ps~~~~l~~~~~~~~~~~------------------------------------ 209 (443)
T 2y4o_A 166 VPMSGGQTEKQVQLIRDFEPKIILVTPSYMLNLIDEMVRQGMDP------------------------------------ 209 (443)
T ss_dssp ECCCSCCHHHHHHHHHHHCCSEEEECHHHHHHHHHHHHHTTCCG------------------------------------
T ss_pred EECCCCCHHHHHHHHHHhCCcEEEECHHHHHHHHHHHHHcCCCc------------------------------------
Confidence 88776 99999999999999999999999999876533211000
Q ss_pred HHHHHHHhCCcEeEEEEccCCCCHHHHHHHHHhcCCceeeecCCCCCCCc-eecccCCCccccCccCCCccCeeEEeeec
Q 006115 374 FRKVKARLGGRLRLVISGGAPLSTEVEEFLRVTCCAFLVQGYGLTETCGP-TTVCFPDEMCMVGTAGPVSVYSELRLEEV 452 (660)
Q Consensus 374 ~~~~~~~~~~slr~v~~~G~~l~~~~~~~~~~~~~~~v~~~YG~tE~~~~-~~~~~~~~~~~~~~~G~~~~~~~v~iv~~ 452 (660)
..++||.+++||+++++++.+.+++.+|+++++.||+||+++. +........ ...+.+.+++.++|+|
T Consensus 210 -------~~~~lr~i~~gGe~l~~~~~~~~~~~~g~~v~~~YG~TE~~g~~~~~~~~~~~---~g~~~~~~~~~~~i~d- 278 (443)
T 2y4o_A 210 -------AESSLKIGIFGAEPWTQALRNEVETRVGIDALDIYGLSEVMGPGVACECVETK---DGPVIWEDHFYPEIID- 278 (443)
T ss_dssp -------GGSSCCEEEEESSCCCHHHHHHHHHHHTCEEEEEEEETTTTEEEEEEECTTTC---CSEEECTTTEEEEEEC-
T ss_pred -------ccCCceEEEECCCcCCHHHHHHHHHHhCcCEEeccCchhhcCCeEEeccCCCC---CceEEccCCeEEEEEc-
Confidence 0148999999999999999999999899999999999998543 222211111 1245567899999998
Q ss_pred CCCCCCCCCCCCCceEEEccCCcccccCCCchhhhhcccCCccccCceEEECCC-CcE-----EEEeccCCeeEcCCCee
Q 006115 453 PEMGYSPLDDPPCGEVCVRGKTLFSGYYKNPDLTRESIIDGWFHTGDIGQILPN-GVV-----KIIDRKKNLIKISQGEY 526 (660)
Q Consensus 453 ~~~~~~~~~~g~~GEi~v~g~~~~~gy~~~~~~~~~~f~~g~~~TGDl~~~~~~-G~l-----~~~GR~~d~i~~~~G~~ 526 (660)
++++ .+++.|+.|||+|+|. +.+.|.++||+|||+|+++++ |++ ++.||.||+|++ +|++
T Consensus 279 ~~~g-~~~~~G~~Gel~v~~~------------t~~~~p~~~y~TGDl~~~~~~cG~~~~~l~~i~GR~~d~i~~-~G~~ 344 (443)
T 2y4o_A 279 PVTG-EVLPDGSQGELVFTSL------------TKEAMPVIRYRTRDLTALLPPTARAMRRLAKITGRSDDMLIV-RGVN 344 (443)
T ss_dssp TTTC-CBCCTTCCEEEEEEES------------SCSSSCCSSEEEEEEECEECCSSSSSCEECCCCEESSCCEEE-TTEE
T ss_pred CCCC-CCCCCCCceEEEEeCC------------CcccChhheeecCCEEEEcCCCCCCccccCccccccCCeEEE-CCEE
Confidence 5433 4566788999999983 233456899999999999999 986 899999999997 7999
Q ss_pred ecchhHHHHHhcCcCcceEEEEecCC---CCeEEEEEEcCh--hhHHHHHHHCCCCCcHHHHhccHHHHHHHHHHHHHHH
Q 006115 527 VALEYLENVYCVAPIIEDIWVYGDSL---KSMLVAVVVPCE--EDTKKWAYSNGHAGSFLELCSLVQLQNYILSELKNAA 601 (660)
Q Consensus 527 v~~~~iE~~l~~~p~V~~~~v~~~~~---~~~~~a~v~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~ 601 (660)
|+|.+||++|.+||+|.+++|++.++ .+.++++|++.+ +.. .+. .+.+++.+.+.+
T Consensus 345 v~p~eiE~~l~~~p~V~~~~vv~~~~~~~~~~~~a~v~~~~~~~~~----------~~~---~~~~~l~~~l~~------ 405 (443)
T 2y4o_A 345 VFPSQIEEIVVALPLLSGQFQITLSRDGHMDRLDLAVELRSEAAAS----------VTD---GERAALARELQH------ 405 (443)
T ss_dssp ECHHHHHHHHHTSTTEEEEEEEEEEEETTEEEEEEEEEECHHHHTT----------CCH---HHHHHHHHHHHH------
T ss_pred ECHHHHHHHHHhCcCcCccEEEEEecCCCCceEEEEEEECCccccc----------chh---hHHHHHHHHHHH------
Confidence 99999999999999999999887532 347889998876 310 000 011223333332
Q ss_pred HHCCCCCc-eeeeEEEEecCCCCCCCCccccccccchHHHH
Q 006115 602 ERNKLRGF-EHIKGVILDPRPFDMERDLVTATLKKKRNKLL 641 (660)
Q Consensus 602 ~~~~l~~~-~~p~~i~~~~~~~~~~~~P~t~~GKv~R~~l~ 641 (660)
.|+.| .+|..+.+++ ++++|+|++||++|+..+
T Consensus 406 ---~l~~~~~~p~~v~~v~----~~~lP~t~~GKi~r~~~~ 439 (443)
T 2y4o_A 406 ---RIKTMVGVSSGVTVLA----AGGIPATATGKARRVIDR 439 (443)
T ss_dssp ---HHHHHTCCCCEEEEEC----TTCSCCCTTSCCCSEEEC
T ss_pred ---HHHHHhCCceEEEEeC----CCcccCccCCcceEEEec
Confidence 33344 4677777773 256799999999997543
No 35
>2y27_A Phenylacetate-coenzyme A ligase; phenylacetic acid degradation pathway; HET: MSE PG4 ATP; 1.60A {Burkholderia cenocepacia} PDB: 2y4n_A*
Probab=100.00 E-value=9.4e-43 Score=373.62 Aligned_cols=334 Identities=18% Similarity=0.175 Sum_probs=254.7
Q ss_pred CCCCCCeEEEEecCCCCCCCceeeeccHhHHHHhhhcccccccccCCCCCCcEEEEecCh-hhHHHHHHHHHHhhcCcEE
Q 006115 216 PPQPFNICTIMYTSGTSGDPKGVVLTHETIATFVSGVDLFLDQFEDKMTVDDVYLSFLPL-AHILDRVIEEYFFRRGASV 294 (660)
Q Consensus 216 ~~~~~~~a~i~~TSGTTG~pK~v~~th~~l~~~~~~~~~~~~~~~~~~~~~d~~l~~~p~-~~~~g~~~~~~~l~~G~~~ 294 (660)
...++++++++|||||||.||+|++||+++...+..+...+.. .++.++|++++.+|+ +|..++...+.++..|+++
T Consensus 86 ~~~~~~~~~i~~TSGTTG~PK~v~~t~~~~~~~~~~~~~~~~~--~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~G~~~ 163 (437)
T 2y27_A 86 AVPQDRISRIHASSGTTGKPTVVGYTAADIDTWANLVARSIRA--AGARRGDKVHVSYGYGLFTGGLGAHYGAERAGLTV 163 (437)
T ss_dssp SSCGGGCCEEEECCCTTSSCCEEEECHHHHHHHHHHHHHHHHH--TTCCTTCEEEECSCCSSSHHHHHHHHHHHHTTCEE
T ss_pred cCChhHeEEEEECCCCCCCceEEecCHHHHHHHHHHHHHHHHH--cCCCCCCEEEEcccccccccchHHHHHHHHcCCEE
Confidence 4567899999999999999999999999988776544332111 167899999999998 6777777778889999999
Q ss_pred EEecC-ChHHHHHHhhhhcCeEEEechHHHHHHHHHHHHHHHhhchHHHHHHHHHHHHHHHHHhcCCCCCCcchhHHHHH
Q 006115 295 GYYHG-DLNALRDDLMELKPTLLAGVPRVFEKIHEGIKKALEELRPLRRRIFDALYKYKLAWMNMGYKQREASPLADLLA 373 (660)
Q Consensus 295 v~~~~-~~~~~~~~i~~~~~t~l~~~p~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 373 (660)
++.+. ++..+++.|+++++|+++++|+++..|++.........
T Consensus 164 ~~~~~~~~~~~~~~i~~~~~t~l~~~Ps~~~~l~~~~~~~~~~~------------------------------------ 207 (437)
T 2y27_A 164 IPFGGGQTEKQVQLIQDFRPDIIMVTPSYMLSIADEIERQGLDP------------------------------------ 207 (437)
T ss_dssp ECCCSCCHHHHHHHHHHHCCSEEEECHHHHHHHHHHHHHTTCCG------------------------------------
T ss_pred EeCCCCCHHHHHHHHHHhCCCEEEECHHHHHHHHHHHHHcCCCc------------------------------------
Confidence 88776 99999999999999999999999999876533211000
Q ss_pred HHHHHHHhCCcEeEEEEccCCCCHHHHHHHHHhcCCceeeecCCCCCCCc-eecccCCCccccCccCCCccCeeEEeeec
Q 006115 374 FRKVKARLGGRLRLVISGGAPLSTEVEEFLRVTCCAFLVQGYGLTETCGP-TTVCFPDEMCMVGTAGPVSVYSELRLEEV 452 (660)
Q Consensus 374 ~~~~~~~~~~slr~v~~~G~~l~~~~~~~~~~~~~~~v~~~YG~tE~~~~-~~~~~~~~~~~~~~~G~~~~~~~v~iv~~ 452 (660)
..+++|.+++||+++++++.+.+++.+|+++++.||+||+++. ++....... ...+.+.+++.++|+|
T Consensus 208 -------~~~~lr~i~~gGe~l~~~~~~~~~~~~g~~v~~~YG~TE~~g~~~~~~~~~~~---~g~~~~~~~~~~~i~d- 276 (437)
T 2y27_A 208 -------VQSSLRIGIFGAEPWTNDMRVAIEQRMGIDAVDIYGLSEVMGPGVASECVETK---DGPTIWEDHFYPEIID- 276 (437)
T ss_dssp -------GGSSCCEEEEESSCCCHHHHHHHHHHHTSEEEEEEEETTTTEEEEEECCTTTC---SSCEECTTTEEEEEEC-
T ss_pred -------ccCCeeEEEEcCccCCHHHHHHHHHHHCcCEEecCCchhhcCCeeEEecCCCC---CceeEccCceEEEEEc-
Confidence 0148999999999999999999998889999999999998443 332221111 1255667899999998
Q ss_pred CCCCCCCCCCCCCceEEEccCCcccccCCCchhhhhcccCCccccCceEEECC-CCcE-----EEEeccCCeeEcCCCee
Q 006115 453 PEMGYSPLDDPPCGEVCVRGKTLFSGYYKNPDLTRESIIDGWFHTGDIGQILP-NGVV-----KIIDRKKNLIKISQGEY 526 (660)
Q Consensus 453 ~~~~~~~~~~g~~GEi~v~g~~~~~gy~~~~~~~~~~f~~g~~~TGDl~~~~~-~G~l-----~~~GR~~d~i~~~~G~~ 526 (660)
++++ .+++.|+.|||+|+|. +.+.|.++||+|||+|++++ +|++ ++.||.||+|++ +|++
T Consensus 277 ~~~g-~~~~~g~~Gel~v~~~------------t~~~~~~~~y~TGDl~~~~~~~G~~~~~i~~i~GR~~d~i~~-~G~~ 342 (437)
T 2y27_A 277 PETG-EVLPDGELGELVFTSL------------TKEALPIIRYRTRDLTRLLPGTARTMRRMEKITGRSDDMMIV-RGVN 342 (437)
T ss_dssp TTTC-CBCCTTCCEEEEEEES------------SCSSSCCCSEEEEEEECEECCSSSSSCEECCCCEEGGGCEEE-TTEE
T ss_pred CCCC-CCCCCCCccEEEEecC------------CcCCchhheeecCCEEEEeCCCCCCccccCccccccCCeEEE-CCeE
Confidence 5433 4566788999999983 33445689999999999998 6985 899999999997 8999
Q ss_pred ecchhHHHHHhcCcCcceEEEEecCC---CCeEEEEEEcChhhHHHHHHHCCCCCcHHHHhccHHHHHHHHHHHHHHHHH
Q 006115 527 VALEYLENVYCVAPIIEDIWVYGDSL---KSMLVAVVVPCEEDTKKWAYSNGHAGSFLELCSLVQLQNYILSELKNAAER 603 (660)
Q Consensus 527 v~~~~iE~~l~~~p~V~~~~v~~~~~---~~~~~a~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 603 (660)
|+|.+||++|.+||+|.+++|++.++ .+.++|+|++.++.. .+. .+.+++.+.+.+
T Consensus 343 v~p~eiE~~l~~~p~V~~~~vv~~~~~~~~~~l~a~v~~~~~~~----------~~~---~~~~~l~~~l~~-------- 401 (437)
T 2y27_A 343 VFPTQIEEQLLKQRALAPHYQIVLTKEGPLDVLTLNVEPCPETA----------PDT---AAIQVAKQALAY-------- 401 (437)
T ss_dssp ECHHHHHHHHTTCTTBCSCCEEEEEEETTEEEEEEEECBCTTTT----------TCH---HHHHHHHHHHHH--------
T ss_pred ECHHHHHHHHHhCcCcCccEEEEEeecCCCceEEEEEEECCCcc----------chh---hhHHHHHHHHHH--------
Confidence 99999999999999999998887432 357899998876430 000 011223333332
Q ss_pred CCCCCc-eeeeEEEEecCCCCCCCCccccccccchHH
Q 006115 604 NKLRGF-EHIKGVILDPRPFDMERDLVTATLKKKRNK 639 (660)
Q Consensus 604 ~~l~~~-~~p~~i~~~~~~~~~~~~P~t~~GKv~R~~ 639 (660)
.|+.| .+|..+.+++ ++++|+|+ ||++|+.
T Consensus 402 -~l~~~~~~p~~v~~v~----~~~lP~t~-GKi~r~~ 432 (437)
T 2y27_A 402 -DIKSLIGVTAVINVLP----VNGIERSV-GKARRVV 432 (437)
T ss_dssp -HHHHHHCCCEEEEECC----TTCSCCCS-SSCCCEE
T ss_pred -HHHHhcCCceEEEEeC----CCCccCCC-CcceEEE
Confidence 34455 4677777763 25679999 9999864
No 36
>3hgu_A EHPF; phenazine, antibiotic, biosynthetic protein; 1.95A {Pantoea agglomerans} PDB: 3hgv_A 3l2k_A*
Probab=99.95 E-value=2.3e-27 Score=248.05 Aligned_cols=237 Identities=17% Similarity=0.151 Sum_probs=172.7
Q ss_pred CCCCCeEEEEecCCCCCCCceeeeccHhHHHHhhhcccccccccCCCCCCcEEEEecCh-hhHHHHHHHHHHhhcCcEEE
Q 006115 217 PQPFNICTIMYTSGTSGDPKGVVLTHETIATFVSGVDLFLDQFEDKMTVDDVYLSFLPL-AHILDRVIEEYFFRRGASVG 295 (660)
Q Consensus 217 ~~~~~~a~i~~TSGTTG~pK~v~~th~~l~~~~~~~~~~~~~~~~~~~~~d~~l~~~p~-~~~~g~~~~~~~l~~G~~~v 295 (660)
..++++++++|||||||.||+|.++|+++...+..+...+.. .++..+|++++.+|+ +|..|+...+.++..|+.++
T Consensus 88 ~~~~~~a~i~~TSGTTG~PKgv~~t~~~~~~~~~~~~~~~~~--~~~~~~d~~l~~~p~g~~~~g~~~~~~~~~~G~~v~ 165 (369)
T 3hgu_A 88 LPADSHPQVYESGGTTGAPKYVVAYDAWIEALISWRMSGYQH--RPGRPSGNTLAAIPTGPHIVGAINKERALRLGGMFF 165 (369)
T ss_dssp SCTTCCCEEEEECC---CCEEEEECHHHHHHHHHHHTTTTTT--STTCCCCEEEECSCCTTCHHHHHHHHHHHHTTSCEE
T ss_pred CCccccEEEEECCCCCCCCCEEEECHHHHHHHHHHHHhhHHh--hCCCCcceEEEecCCCchhhhHHHHHHHHHcCCEEE
Confidence 467889999999999999999999999999988754433222 167899999999999 99999888777788999444
Q ss_pred EecCChH-----------------------HHHHHhhhhcCeEEEechHHHHHHHHHHHHHHHhhchHHHHHHHHHHHHH
Q 006115 296 YYHGDLN-----------------------ALRDDLMELKPTLLAGVPRVFEKIHEGIKKALEELRPLRRRIFDALYKYK 352 (660)
Q Consensus 296 ~~~~~~~-----------------------~~~~~i~~~~~t~l~~~p~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~ 352 (660)
....++. .+++.++++++|+++++|+++..|++.....
T Consensus 166 ~~~~dp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~t~l~~~Ps~~~~l~~~~~~~------------------- 226 (369)
T 3hgu_A 166 SIDIDPRWVKRSLSEGDTATVRKYTHHLVDQVQNTLMNQDIRFLVTTPPVLRELLKRPEVV------------------- 226 (369)
T ss_dssp CCCCCHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHSCEEEEEECHHHHHHHTTCHHHH-------------------
T ss_pred CccCChHHHHHhhcccchhhhHHHHHHHHHHHHHHHHhCCCCEEEeCHHHHHHHHhhhhhh-------------------
Confidence 3333666 7888999999999999999999987542111
Q ss_pred HHHHhcCCCCCCcchhHHHHHHHHHHHHhCCcEeEEEEccCCCCHHHHHHHH-Hhc-CCceeeecCCCCCCCceecccCC
Q 006115 353 LAWMNMGYKQREASPLADLLAFRKVKARLGGRLRLVISGGAPLSTEVEEFLR-VTC-CAFLVQGYGLTETCGPTTVCFPD 430 (660)
Q Consensus 353 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~slr~v~~~G~~l~~~~~~~~~-~~~-~~~v~~~YG~tE~~~~~~~~~~~ 430 (660)
..++ ++||.+++||+++++++.+.++ +.| ++++++.||+||+++++..++.
T Consensus 227 ------------------~~~~--------~~lr~i~~gGe~l~~~~~~~~~~~~~p~~~v~~~YG~TE~~~~~~~~~~- 279 (369)
T 3hgu_A 227 ------------------LQMK--------QSLAQITLGGTELNLDEIKFIASEILPDCEFSASYGSTSALGVSRSLLI- 279 (369)
T ss_dssp ------------------HHHH--------HHCSEEEEESSCCCHHHHHHHHHHTCTTSEEEEEEEEGGGTEEEEECCB-
T ss_pred ------------------cccc--------CCeeEEEECCccCCHHHHHHHHHHhCCCcEEEcccCchhhhcceecccc-
Confidence 1112 2899999999999999999999 898 8999999999999876643321
Q ss_pred CccccCccCCC------ccCeeEEeeecCCCCCCCCCCCCCceEEEccCCcccccCCCchhhhhcccCCccccCceEEEC
Q 006115 431 EMCMVGTAGPV------SVYSELRLEEVPEMGYSPLDDPPCGEVCVRGKTLFSGYYKNPDLTRESIIDGWFHTGDIGQIL 504 (660)
Q Consensus 431 ~~~~~~~~G~~------~~~~~v~iv~~~~~~~~~~~~g~~GEi~v~g~~~~~gy~~~~~~~~~~f~~g~~~TGDl~~~~ 504 (660)
.++|.+ +++++++|+| ++++ .+++.|+.|||+|++... ..+ --.|+|||++.+.
T Consensus 280 -----~~~G~~~~~~~~~~~~~v~ivD-~~~g-~~vp~G~~GEl~vt~l~~------------~~~-l~ry~tgD~~~~~ 339 (369)
T 3hgu_A 280 -----TSESQQVIYDSFSPFITYDVVD-SITA-QTVEYGERGNVIVTHLSP------------WAF-YPRVAERDTAIRL 339 (369)
T ss_dssp -----CTTCSSCEEECCTTTEEEEEEC-TTTC-SBCCTTCEEEEEEEEEET------------TEE-EEEEEEEEEEEEE
T ss_pred -----ccCCCcccccCCCCCeEEEEEC-CCCC-cCCCCCCceEEEEEEcCc------------ccc-cccccCCceEEEe
Confidence 247888 9999999999 5333 466678999999998321 111 1137889988874
Q ss_pred CC--C-------cEEEEeccCCeeEc
Q 006115 505 PN--G-------VVKIIDRKKNLIKI 521 (660)
Q Consensus 505 ~~--G-------~l~~~GR~~d~i~~ 521 (660)
+. | .+..++|.++..++
T Consensus 340 ~~~~g~~~d~~~~v~~~~~~~~~~~i 365 (369)
T 3hgu_A 340 PGVSGFAGDRLADIEPLKISEGRKVI 365 (369)
T ss_dssp CCSTTCSSCEEEEEEECC--------
T ss_pred cCCCCCcCcccccceeccccCCCcee
Confidence 32 2 24556666666665
No 37
>3lax_A Phenylacetate-coenzyme A ligase; structural genomics, PSI-2, protein structure initiative, midwest center for structural genomics, MCSG; 1.43A {Bacteroides vulgatus}
Probab=99.28 E-value=6.5e-12 Score=105.38 Aligned_cols=98 Identities=11% Similarity=-0.006 Sum_probs=64.0
Q ss_pred eccCCeeEcCCCeeecchhHHHHHhcCcCcceEEEEecCCC---CeEEEEEEcChhhHHHHHHHCCCCCcHHHHhccHHH
Q 006115 513 DRKKNLIKISQGEYVALEYLENVYCVAPIIEDIWVYGDSLK---SMLVAVVVPCEEDTKKWAYSNGHAGSFLELCSLVQL 589 (660)
Q Consensus 513 GR~~d~i~~~~G~~v~~~~iE~~l~~~p~V~~~~v~~~~~~---~~~~a~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 589 (660)
.|.||||++ +|.+|+|.+||++|.+||+|.++++++.+++ +.+.++|+..++.. .+.+.
T Consensus 1 srADDmIiv-~G~nv~P~eIE~vl~~~p~v~~~~vv~v~~~~~~~~~~~~V~~~~~~~-----------------~~~~~ 62 (109)
T 3lax_A 1 SNADDMIIL-KGVNIFPIQIETILLQFKELGSDYLITLETAESNDEMTVEVELSQLFT-----------------DDYGR 62 (109)
T ss_dssp CGGGSCEEE-TTEEECHHHHHHHHHTCTTEEEEEEEEEEEETTEEEEEEEEEECTTCC-----------------CCHHH
T ss_pred CCcCEEEEE-CCEEECHHHHHHHHHhCCCcccceEEEEeccccceeEEEEEEEeeccc-----------------cccch
Confidence 489999997 7999999999999999999999999886544 36788888776430 12222
Q ss_pred HHHHHHHHHHHHHHCCCCCceeeeEEEEecCCCCCCCCccccccccch
Q 006115 590 QNYILSELKNAAERNKLRGFEHIKGVILDPRPFDMERDLVTATLKKKR 637 (660)
Q Consensus 590 ~~~~~~~l~~~~~~~~l~~~~~p~~i~~~~~~~~~~~~P~t~~GKv~R 637 (660)
.+.+.+.|.+.++.. +.++..+.+++ .+++|+| +||++|
T Consensus 63 ~~~l~~~i~~~l~~~----~gv~~~v~~v~----~~~lPrt-sGKi~R 101 (109)
T 3lax_A 63 LQALTREITRQLKDE----ILVTPRVKLVP----KGALPKS-EGKAVR 101 (109)
T ss_dssp HHHHHHHHHHHHHHH----HSSCCEEEEEC----TTCSCCC----CCC
T ss_pred hhhhHHHHHHHHHHH----hCCccceEEEc----CCeecCC-CCCcch
Confidence 233333443333211 11233466663 3678998 799988
No 38
>3gxs_A Phenylacetate-coenzyme A ligase; APC62324.1, structural genomics, PSI-2, protein structure initiative; 1.43A {Bacteroides vulgatus atcc 8482} PDB: 3lax_A
Probab=99.13 E-value=1.1e-10 Score=97.55 Aligned_cols=99 Identities=14% Similarity=0.059 Sum_probs=63.8
Q ss_pred eccCCeeEcCCCeeecchhHHHHHhcCcCcceEEEEecCCC---CeEEEEEEcChhhHHHHHHHCCCCCcHHHHhccHHH
Q 006115 513 DRKKNLIKISQGEYVALEYLENVYCVAPIIEDIWVYGDSLK---SMLVAVVVPCEEDTKKWAYSNGHAGSFLELCSLVQL 589 (660)
Q Consensus 513 GR~~d~i~~~~G~~v~~~~iE~~l~~~p~V~~~~v~~~~~~---~~~~a~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 589 (660)
||.||+|++ +|.+++|.+||++|.+||+|.++++++.+++ +.+++++++ ++.. ..+.. +.+++
T Consensus 1 GR~~D~Iiv-~G~nv~P~eIE~~l~~~p~v~~~~~v~v~~~~~~e~l~~~ve~-~~~~---------~~~~~---~~~~l 66 (109)
T 3gxs_A 1 SNADDMIIL-KGVNIFPIQIETILLQFKELGSDYLITLETAESNDEMTVEVEL-SQLF---------TDDYG---RLQAL 66 (109)
T ss_dssp CGGGSCEEE-TTEEECHHHHHHHHHTCTTEEEEEEEEEEEETTEEEEEEEEEE-CTTC---------CCCHH---HHHHH
T ss_pred CCccCEEEE-CCEEECHHHHHHHHHhCCCcCCcEEEEEEcCCCceEEEEEEEE-cCcc---------ccchh---HHHHH
Confidence 899999997 7999999999999999999998877664432 478888887 4320 00000 12334
Q ss_pred HHHHHHHHHHHHHHCCCCCceeeeEEEEecCCCCCCCCccccccccchH
Q 006115 590 QNYILSELKNAAERNKLRGFEHIKGVILDPRPFDMERDLVTATLKKKRN 638 (660)
Q Consensus 590 ~~~~~~~l~~~~~~~~l~~~~~p~~i~~~~~~~~~~~~P~t~~GKv~R~ 638 (660)
.+.+.+.+.+.. .++ | .+.+++ ..++|+| +||++|.
T Consensus 67 ~~~i~~~l~~~~---~~~----~-~v~~v~----~~~lPrt-sGKi~R~ 102 (109)
T 3gxs_A 67 TREITRQLKDEI---LVT----P-RVKLVP----KGALPKS-EGKAVRV 102 (109)
T ss_dssp HHHHHHHHHHHH---SSC----C-EEEEEC----TTCSCCC----CCCE
T ss_pred HHHHHHHHHHhh---CCc----e-EEEEEC----CCCccCC-CCceEEE
Confidence 455555554332 232 2 577764 2578999 9999974
No 39
>4eql_A 4-substituted benzoates-glutamate ligase GH3.12; firefly luciferase family, acyl adenylase, amino acid conjug ligase; HET: AMP SAL; 1.80A {Arabidopsis thaliana} PDB: 4epm_A* 4eq4_A* 4ewv_A*
Probab=98.79 E-value=4.6e-08 Score=104.91 Aligned_cols=131 Identities=18% Similarity=0.140 Sum_probs=82.0
Q ss_pred EeEEEEccCCCCHHHHHHHHHhc-CCcee-eecCCCCCCCceecccCCCccccCccCC-Ccc-CeeEEeeecCCCC-C--
Q 006115 385 LRLVISGGAPLSTEVEEFLRVTC-CAFLV-QGYGLTETCGPTTVCFPDEMCMVGTAGP-VSV-YSELRLEEVPEMG-Y-- 457 (660)
Q Consensus 385 lr~v~~~G~~l~~~~~~~~~~~~-~~~v~-~~YG~tE~~~~~~~~~~~~~~~~~~~G~-~~~-~~~v~iv~~~~~~-~-- 457 (660)
+.+++.||. ......++..+ +.++. ..|++||+. +.....+.. .+...+. .++ ..-.+.++.++.. .
T Consensus 302 l~~~~~G~~---~~Y~~~l~~~~g~~p~~~~~Y~ASEg~-~gi~~~p~~--~~~~~~~~L~~~~~ffEFip~~~~~~~~~ 375 (581)
T 4eql_A 302 IETVVTGSM---GQYVPMLNYYCNDLPLVSTTYGSSETT-FGINLDPLC--KPEDVSYTFMPNMSYFEFIPMDGGDKNDV 375 (581)
T ss_dssp EEEECSGGG---GGGHHHHHHHHTTCCEECCEEECSSCE-EEECSCTTS--CGGGCCEEECTTSSEEEEEECSTTCCSSC
T ss_pred EEEEcCCCh---HHHHHHHHHHcCCCccccCccccccce-eeeccCCCC--CcccCceeecCCcEEEEEEeccccCCCcE
Confidence 555566663 44555666555 67777 899999953 222111111 1011221 122 2334445422211 1
Q ss_pred ---CCCCCCCCceEEEccCCcccccCCCchhhhhcccCCccccCceEEECC----CCcEEEEeccCCeeEcCCCeeecch
Q 006115 458 ---SPLDDPPCGEVCVRGKTLFSGYYKNPDLTRESIIDGWFHTGDIGQILP----NGVVKIIDRKKNLIKISQGEYVALE 530 (660)
Q Consensus 458 ---~~~~~g~~GEi~v~g~~~~~gy~~~~~~~~~~f~~g~~~TGDl~~~~~----~G~l~~~GR~~d~i~~~~G~~v~~~ 530 (660)
..+..|+.+||+|+..+ |.|+ |++||+.+++. ..++.|+||.+++|.+ .|+++++.
T Consensus 376 v~l~eVe~G~~YelViTt~~---GL~R-------------Yr~GD~v~v~~f~~~~p~i~f~gR~~~~l~~-~Gekl~~~ 438 (581)
T 4eql_A 376 VDLEDVKLGCTYEPVVTNFA---GLYR-------------MRVGDIVLVTGFYNNAPQFKFVRRENVVLSI-DSDKTNEE 438 (581)
T ss_dssp EEGGGCCTTCEEEEEEECSS---SCCS-------------EECCEEEEEEEEETTEEEEEEEEETTEEECS-SSCCEEHH
T ss_pred eCHHHcCCCceEEEEEeecc---ceee-------------EEcCCEEEEcccCCCCcEEEEEEecCCEEEe-eeeECCHH
Confidence 12335678999998853 4333 89999999875 4579999999999997 79999999
Q ss_pred hHHHHHhc
Q 006115 531 YLENVYCV 538 (660)
Q Consensus 531 ~iE~~l~~ 538 (660)
+||++|.+
T Consensus 439 ~v~~al~~ 446 (581)
T 4eql_A 439 DLFKAVSQ 446 (581)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHH
Confidence 99999964
No 40
>4b2g_A GH3-1 auxin conjugating enzyme; signaling protein, ignaling protein, adenylate, amino acid conjugation, plant growth; HET: V1N; 2.40A {Vitis vinifera}
Probab=98.63 E-value=7.2e-08 Score=103.48 Aligned_cols=155 Identities=13% Similarity=0.108 Sum_probs=91.4
Q ss_pred EeEEEEccCCCCHHHHHHHHHhc-CCcee-eecCCCCCCCceecccCCCccccCccCC-Ccc-CeeEEeeecCCC-----
Q 006115 385 LRLVISGGAPLSTEVEEFLRVTC-CAFLV-QGYGLTETCGPTTVCFPDEMCMVGTAGP-VSV-YSELRLEEVPEM----- 455 (660)
Q Consensus 385 lr~v~~~G~~l~~~~~~~~~~~~-~~~v~-~~YG~tE~~~~~~~~~~~~~~~~~~~G~-~~~-~~~v~iv~~~~~----- 455 (660)
+.+++.||. ......++..+ +.+++ ..|++||+-. .....+.. .+...+. .+| ..-.+.++.++.
T Consensus 307 l~~~~tG~~---~~Y~~~l~~~~g~~p~~~~~Y~ASEg~~-gi~~~p~~--~p~~~~~~L~p~~~ffEFIP~~~~~~~~~ 380 (609)
T 4b2g_A 307 LDVIVTGAM---AQYIPTLDYYSGGLPLACTMYASSECYF-GLNLNPMS--KPSEVSYTIMPNMAYFEFLPHEHSSIPLS 380 (609)
T ss_dssp EEEECSGGG---GGGHHHHHHHHTSCCEECCEEECSSCEE-EECSCTTS--CGGGCCEEECTTSCEEEEEEGGGTTSCCC
T ss_pred EEEEccCCh---HHHHHHHHHHcCCCccccCcccccceee-eeecCCCC--CcccCceeecCCcEEEEEEeccccccccc
Confidence 445555552 44445566555 67777 8999999632 22221111 1111111 112 133344442221
Q ss_pred -C--C-----CCCCCCCCceEEEccCCcccccCCCchhhhhcccCCccccCceEEECC----CCcEEEEeccCCeeEcCC
Q 006115 456 -G--Y-----SPLDDPPCGEVCVRGKTLFSGYYKNPDLTRESIIDGWFHTGDIGQILP----NGVVKIIDRKKNLIKISQ 523 (660)
Q Consensus 456 -~--~-----~~~~~g~~GEi~v~g~~~~~gy~~~~~~~~~~f~~g~~~TGDl~~~~~----~G~l~~~GR~~d~i~~~~ 523 (660)
. . ..+..|+.+||+|+.. .|+|+ |++||+++++. ..++.|+||.+++|++ .
T Consensus 381 ~~~~~~~v~l~eVe~G~~YelViTt~---~GL~R-------------Yr~GD~v~v~~f~~~~p~i~~~gR~~~~l~~-~ 443 (609)
T 4b2g_A 381 RDSPPRLVDLAHVEVGKEYELVITTY---AGLYR-------------YRVGDILRVTGFHNSAPQFHFVRRKNVLLSI-D 443 (609)
T ss_dssp SSSCCCCEEGGGCCTTCEEEEEEECT---TSCCS-------------EEEEEEEEEEEEETTEEEEEEEEETTCCBCS-S
T ss_pred cCCCCccccHhHcCCCCeEEEehhhh---hhhhh-------------eecCCEEEEeecCCCCcEEEEEEecCCeEEc-c
Confidence 0 0 1233567899999874 35554 99999999973 4689999999999997 7
Q ss_pred CeeecchhHHHHHhc------Cc--CcceEEEEecC--CCCeEEEEEEc
Q 006115 524 GEYVALEYLENVYCV------AP--IIEDIWVYGDS--LKSMLVAVVVP 562 (660)
Q Consensus 524 G~~v~~~~iE~~l~~------~p--~V~~~~v~~~~--~~~~~~a~v~~ 562 (660)
|+++++.+||++|.+ .. .|.|..++... .+...+.+.++
T Consensus 444 Geki~~~~v~~av~~a~~~l~~~g~~l~eft~~~d~~~~p~Hyv~~wEl 492 (609)
T 4b2g_A 444 SDKTDEAELQKAVDNASKLLREVNTSVVEYTSFADTKTIPGHYVIYWEL 492 (609)
T ss_dssp SCCBCHHHHHHHHHHHHHGGGGTTEEEEEEEEEEECSSSSCEEEEEEEE
T ss_pred ccCCCHHHHHHHHHHHHHhhhccCCeEEEEEEecCCCCCCCcEEEEEEE
Confidence 999999999999962 12 35565554322 22344545554
No 41
>4epl_A Jasmonic acid-amido synthetase JAR1; ANL adenylating enzyme, acyl acid-amido synthetase, adenylat ligase; HET: JAI; 2.01A {Arabidopsis thaliana}
Probab=98.55 E-value=2.1e-06 Score=91.88 Aligned_cols=159 Identities=19% Similarity=0.142 Sum_probs=92.0
Q ss_pred CcEeEE--EEccCCCCHHHHHHHHHhc-CCcee-eecCCCCCCCceecccCCCccccCccCC-CccC-eeEEeeecCCCC
Q 006115 383 GRLRLV--ISGGAPLSTEVEEFLRVTC-CAFLV-QGYGLTETCGPTTVCFPDEMCMVGTAGP-VSVY-SELRLEEVPEMG 456 (660)
Q Consensus 383 ~slr~v--~~~G~~l~~~~~~~~~~~~-~~~v~-~~YG~tE~~~~~~~~~~~~~~~~~~~G~-~~~~-~~v~iv~~~~~~ 456 (660)
++++.| +.+|. + ......++..+ +.++. ..|++||+-. .....+. ..++..+. .+|+ .-.+.++.++.+
T Consensus 302 Pnl~~i~~~~~G~-~-~~Y~~~l~~~~g~~p~~~~~Y~ASEg~~-gi~~~p~--~~~~~~~~~L~p~~~ffEFiP~~~~~ 376 (581)
T 4epl_A 302 PNAKYVYGIMTGS-M-EPYVPKLRHYAGDLPLVSHDYGSSEGWI-AANVTPR--LSPEEATFAVIPNLGYFEFLPVSETG 376 (581)
T ss_dssp TTCCCEEEECSGG-G-GGGHHHHHHHHTTSCEEECCEEETTEEE-EECCCTT--SCTTTCCEEECTTSCEEEEEEC----
T ss_pred CCCceEEEEeCCC-h-HHHHHHHHHHcCCCccccCceeccceee-eeecCCC--CCccccceeecCCcEEEEEEeccccc
Confidence 567533 33442 2 33445666555 67777 8999999632 2222111 11111121 1222 223334322211
Q ss_pred C--------CCCCCCCCceEEEccCCcccccCCCchhhhhcccCCccccCceEEECC----CCcEEEEeccCCeeEcCCC
Q 006115 457 Y--------SPLDDPPCGEVCVRGKTLFSGYYKNPDLTRESIIDGWFHTGDIGQILP----NGVVKIIDRKKNLIKISQG 524 (660)
Q Consensus 457 ~--------~~~~~g~~GEi~v~g~~~~~gy~~~~~~~~~~f~~g~~~TGDl~~~~~----~G~l~~~GR~~d~i~~~~G 524 (660)
. ..+..|+.+||+|+... |.|+ |++||..++.. ..++.|+||.++++.+ .|
T Consensus 377 ~~~~~~v~l~eve~G~~YelviTt~~---GL~R-------------Yr~GD~v~v~g~~~~~p~~~~~gR~~~~l~~-~G 439 (581)
T 4epl_A 377 EGEEKPVGLTQVKIGEEYEVVITNYA---GLYR-------------YRLGDVVKVIGFYNNTPQLKFICRRNLILSI-NI 439 (581)
T ss_dssp ---CCCEEGGGCCTTCEEEEEEESTT---SCSS-------------EEEEEEEEEEEEETTEEEEEEEEETTCCBCS-SS
T ss_pred CCCCceeeHHHcCCCCeEEEEEeecc---ceee-------------EEcCCEEEEecccCCCcEEEEEeecCCeEEe-ee
Confidence 1 12335678999998753 4443 89999999864 2479999999999997 79
Q ss_pred eeecchhHHHHHhc------Cc--CcceEEEEecCC--CCeEEEEEEcC
Q 006115 525 EYVALEYLENVYCV------AP--IIEDIWVYGDSL--KSMLVAVVVPC 563 (660)
Q Consensus 525 ~~v~~~~iE~~l~~------~p--~V~~~~v~~~~~--~~~~~a~v~~~ 563 (660)
+++++.+||+++.+ .. .|.|..++.... +...+.+.++.
T Consensus 440 e~~~~~~v~~al~~a~~~l~~~~~~l~eft~~~d~~~~p~hyv~~wE~~ 488 (581)
T 4epl_A 440 DKNTERDLQLSVESAAKRLSEEKIEVIDFSSYIDVSTDPGHYAIFWEIS 488 (581)
T ss_dssp CCBCHHHHHHHHHHHHHHHHTTTCCEEEEEEEEECSSSSCEEEEEEEES
T ss_pred eECCHHHHHHHHHHHHHhhcccCCeEEEEEEecCCCCCCCcEEEEEeec
Confidence 99999999999953 22 466666655322 23455555654
No 42
>3qov_A Phenylacetate-coenzyme A ligase; acetyl-COA synthetase-like, structural genomics, joint cente structural genomics, JCSG; HET: MSE ADP COA; 2.20A {Bacteroides thetaiotaomicron} PDB: 3s89_A*
Probab=90.05 E-value=1.9 Score=44.73 Aligned_cols=121 Identities=8% Similarity=-0.057 Sum_probs=88.4
Q ss_pred CCCcee-eeccccCCCCCce--EEeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEeCCh--hhHHHHHHHHHhCCCeEeec
Q 006115 57 GNRMLG-WRPFVDGKFGPYV--WKTYKEVYEEVLQIVSALRASGAEPGCRVGIYGANC--PQWVEAMEACNALSLICVPL 131 (660)
Q Consensus 57 d~~a~~-~~~~~~~~~~~~~--~~Ty~el~~~~~~lA~~L~~~gv~~gd~V~l~~~n~--~~~~~~~lA~~~~G~~~v~i 131 (660)
+.++++ +. .|.+|..+ .+|...+...+..++..+...|+.++|++...++-+ ...+..+++++..|+.+++.
T Consensus 86 ~~~a~i~~T---SGTTG~PK~v~~th~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~l~~G~~~~~~ 162 (436)
T 3qov_A 86 RDGVRIHSS---SGTTGNPTVIVHSQHDLDSWANLVARCLYMVGIRKTDVFQNSSGYGMFTGGLGFQYGAERLGCLTVPA 162 (436)
T ss_dssp HHEEEEEEC---SCSSSCCCEEEEEHHHHHHHHHHHHHHHHHTTCCTTSEEEECSCCTTCHHHHHHHHHHHHHTCEEECC
T ss_pred CCeEEEEEC---CCcCCCCeEEEECHHHHHHHHHHHHHHHHHcCCCCCCEEEECcccccchhHHHHHHHHHHcCCEEEeC
Confidence 445543 33 56666543 689999999888888888888999999999888754 33445678889999998877
Q ss_pred CCCCChhhHHHHhhcccceEEEEccchhhhhhccccc-----cccCccEEEEecC
Q 006115 132 YDTLGPGAVNFILDHAEIDFVFVQDKKVKELLSPDCR-----SAQRLRVMVCFTS 181 (660)
Q Consensus 132 ~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~~~-----~~~~~~~i~~~~~ 181 (660)
++. .++.+...|++.++.+++........+...... .+..++.++.-..
T Consensus 163 ~~~-~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~~~~~~lr~i~~gGe 216 (436)
T 3qov_A 163 AAG-NSKRQIKFISDFKTTALHAIPSYAIRLAEVFQEEGIDPRETTLKTLVIGAE 216 (436)
T ss_dssp CSC-CHHHHHHHHHHHTCCEEECCHHHHHHHHHHHHHTTCCTTSSSCCEEEEESS
T ss_pred CCC-CHHHHHHHHHHHCCCEEEECHHHHHHHHHHHHHcCCCcccCCccEEEEeCC
Confidence 654 678888999999999999988877665443211 1356666666554
No 43
>2y27_A Phenylacetate-coenzyme A ligase; phenylacetic acid degradation pathway; HET: MSE PG4 ATP; 1.60A {Burkholderia cenocepacia} PDB: 2y4n_A*
Probab=89.52 E-value=2 Score=44.53 Aligned_cols=105 Identities=14% Similarity=0.079 Sum_probs=80.3
Q ss_pred CCCCcee-eeccccCCCCCc--eEEeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEeCCh--hhHHHHHHHHHhCCCeEee
Q 006115 56 PGNRMLG-WRPFVDGKFGPY--VWKTYKEVYEEVLQIVSALRASGAEPGCRVGIYGANC--PQWVEAMEACNALSLICVP 130 (660)
Q Consensus 56 pd~~a~~-~~~~~~~~~~~~--~~~Ty~el~~~~~~lA~~L~~~gv~~gd~V~l~~~n~--~~~~~~~lA~~~~G~~~v~ 130 (660)
++.++++ +. .|.+|.. ..+|...+...+..++..+...|+.++|++...++.+ ......+++++..|+.+++
T Consensus 89 ~~~~~~i~~T---SGTTG~PK~v~~t~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~G~~~~~ 165 (437)
T 2y27_A 89 QDRISRIHAS---SGTTGKPTVVGYTAADIDTWANLVARSIRAAGARRGDKVHVSYGYGLFTGGLGAHYGAERAGLTVIP 165 (437)
T ss_dssp GGGCCEEEEC---CCTTSSCCEEEECHHHHHHHHHHHHHHHHHTTCCTTCEEEECSCCSSSHHHHHHHHHHHHTTCEEEC
T ss_pred hhHeEEEEEC---CCCCCCceEEecCHHHHHHHHHHHHHHHHHcCCCCCCEEEEcccccccccchHHHHHHHHcCCEEEe
Confidence 4555544 34 5666654 3679999988888888888888999999999888863 3334567888999999887
Q ss_pred cCCCCChhhHHHHhhcccceEEEEccchhhhhhc
Q 006115 131 LYDTLGPGAVNFILDHAEIDFVFVQDKKVKELLS 164 (660)
Q Consensus 131 i~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~ 164 (660)
++.. +++.+...|++.++.+++........+..
T Consensus 166 ~~~~-~~~~~~~~i~~~~~t~l~~~Ps~~~~l~~ 198 (437)
T 2y27_A 166 FGGG-QTEKQVQLIQDFRPDIIMVTPSYMLSIAD 198 (437)
T ss_dssp CCSC-CHHHHHHHHHHHCCSEEEECHHHHHHHHH
T ss_pred CCCC-CHHHHHHHHHHhCCCEEEECHHHHHHHHH
Confidence 7654 78889999999999999998887765543
No 44
>2y4o_A Phenylacetate-coenzyme A ligase; phenylacetic acid degradation pathway; HET: DLL; 1.90A {Burkholderia cenocepacia}
Probab=89.32 E-value=2 Score=44.62 Aligned_cols=105 Identities=13% Similarity=0.088 Sum_probs=80.5
Q ss_pred CCCCce-eeeccccCCCCCce--EEeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEeCCh--hhHHHHHHHHHhCCCeEee
Q 006115 56 PGNRML-GWRPFVDGKFGPYV--WKTYKEVYEEVLQIVSALRASGAEPGCRVGIYGANC--PQWVEAMEACNALSLICVP 130 (660)
Q Consensus 56 pd~~a~-~~~~~~~~~~~~~~--~~Ty~el~~~~~~lA~~L~~~gv~~gd~V~l~~~n~--~~~~~~~lA~~~~G~~~v~ 130 (660)
++.+++ .+. .|.+|..+ .+|...+...+..++..+...|+.++|++...++-+ .......++++..|+.+++
T Consensus 91 ~~~~~~i~~T---SGTTG~PK~v~~t~~~~~~~~~~~~~~~~~~~~~~~d~~l~~~~~~~~~~~~~~~~~~~~~G~~~~~ 167 (443)
T 2y4o_A 91 REQVVRVHAS---SGTTGKPTVVGYTARDIDTWANVTARSIRAAGGRPGDTLHNAFGYGLFTGGLGIHYGAERLGCMVVP 167 (443)
T ss_dssp GGGCCEEEEE---CCSSSSCEEEEECHHHHHHHHHHHHHHHHHTTCCTTCEEEECSCCSSSHHHHHHHHHHHHHTCEEEC
T ss_pred hhheEEEEEC---CCCCCCceEEecCHHHHHHHHHHHHHHHHHcCCCCCCEEEEeccCcccccHHHHHHHHHHcCCEEEE
Confidence 455553 444 56666644 578999988888888888888999999999888864 3344567888899999888
Q ss_pred cCCCCChhhHHHHhhcccceEEEEccchhhhhhc
Q 006115 131 LYDTLGPGAVNFILDHAEIDFVFVQDKKVKELLS 164 (660)
Q Consensus 131 i~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~ 164 (660)
+++. +++.+...|++.++.+++........+..
T Consensus 168 ~~~~-~~~~~~~~i~~~~~t~l~~~Ps~~~~l~~ 200 (443)
T 2y4o_A 168 MSGG-QTEKQVQLIRDFEPKIILVTPSYMLNLID 200 (443)
T ss_dssp CCSC-CHHHHHHHHHHHCCSEEEECHHHHHHHHH
T ss_pred CCCC-CHHHHHHHHHHhCCcEEEECHHHHHHHHH
Confidence 7664 78888899999999999998887665533
No 45
>3ipl_A 2-succinylbenzoate--COA ligase; structural genomics, acyl-protein synthetase, PSI-2, protein structure initiative; 2.30A {Staphylococcus aureus subsp}
Probab=79.62 E-value=14 Score=38.83 Aligned_cols=121 Identities=7% Similarity=0.015 Sum_probs=83.6
Q ss_pred CCCCCceeeeccccCCCCCce--EEeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEeCChhhH-HHHHHHHHhCCCeEeec
Q 006115 55 YPGNRMLGWRPFVDGKFGPYV--WKTYKEVYEEVLQIVSALRASGAEPGCRVGIYGANCPQW-VEAMEACNALSLICVPL 131 (660)
Q Consensus 55 ~pd~~a~~~~~~~~~~~~~~~--~~Ty~el~~~~~~lA~~L~~~gv~~gd~V~l~~~n~~~~-~~~~lA~~~~G~~~v~i 131 (660)
.|+.+|++.. -.|.+|..+ .+|...+...+..... ..++.++|++...+|-.-.+ +..+++++..|+.++..
T Consensus 161 ~~~d~a~i~~--TSGTTG~PKgv~~th~~~~~~~~~~~~---~~~~~~~d~~l~~~p~~~~~g~~~~~~~l~~G~~~~~~ 235 (501)
T 3ipl_A 161 NLDDIASIMF--TSGTTGPQKAVPQTFRNHYASAIGCKE---SLGFDRDTNWLSVLPIYHISGLSVLLRAVIEGFTVRIV 235 (501)
T ss_dssp CTTSEEEEEE--CCTTTSCCCEEEEEHHHHHHHHHHHHH---HTCCCTTCEEEECSCTTSHHHHHHHHHHHHHTCEEEEC
T ss_pred CCCCeEEEEE--CCCCCCCCcEEEEeHHHHHHHHHHHHH---hhCCCccCEEEEeCcHHHHHHHHHHHHHHHcCceEEeC
Confidence 4566666543 145565543 6788888776655443 45889999998888775432 33467788899998877
Q ss_pred CCCCChhhHHHHhhcccceEEEEccchhhhhhccccccccCccEEEEecC
Q 006115 132 YDTLGPGAVNFILDHAEIDFVFVQDKKVKELLSPDCRSAQRLRVMVCFTS 181 (660)
Q Consensus 132 ~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~~~~~~~~~~i~~~~~ 181 (660)
+ ..+++.+...+++.++.++++.......+..........++.++.-..
T Consensus 236 ~-~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~lr~i~~gG~ 284 (501)
T 3ipl_A 236 D-KFNAEQILTMIKNERITHISLVPQTLNWLMQQGLHEPYNLQKILLGGA 284 (501)
T ss_dssp S-SCCHHHHHHHHHHSCCCEEEECHHHHHHHHHHTCCSCTTCCEEEECSS
T ss_pred C-CCCHHHHHHHHHHcCCcEEEchHHHHHHHHhcCCCCcCcccEEEEeCC
Confidence 5 467889999999999999999998877665544333335666555443
No 46
>3hgu_A EHPF; phenazine, antibiotic, biosynthetic protein; 1.95A {Pantoea agglomerans} PDB: 3hgv_A 3l2k_A*
Probab=76.54 E-value=8.8 Score=38.50 Aligned_cols=122 Identities=14% Similarity=0.042 Sum_probs=78.1
Q ss_pred CCCCCceeeeccccCCCCCce--EEeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEeCChh--hHHHHHHHHHhCCCeEee
Q 006115 55 YPGNRMLGWRPFVDGKFGPYV--WKTYKEVYEEVLQIVSALRASGAEPGCRVGIYGANCP--QWVEAMEACNALSLICVP 130 (660)
Q Consensus 55 ~pd~~a~~~~~~~~~~~~~~~--~~Ty~el~~~~~~lA~~L~~~gv~~gd~V~l~~~n~~--~~~~~~lA~~~~G~~~v~ 130 (660)
.++.++.+.. ..|.+|..+ .+|...+...+..++..+...|+.++|++...++-+. --....+++...|+.+++
T Consensus 89 ~~~~~a~i~~--TSGTTG~PKgv~~t~~~~~~~~~~~~~~~~~~~~~~~d~~l~~~p~g~~~~g~~~~~~~~~~G~~v~~ 166 (369)
T 3hgu_A 89 PADSHPQVYE--SGGTTGAPKYVVAYDAWIEALISWRMSGYQHRPGRPSGNTLAAIPTGPHIVGAINKERALRLGGMFFS 166 (369)
T ss_dssp CTTCCCEEEE--ECC---CCEEEEECHHHHHHHHHHHTTTTTTSTTCCCCEEEECSCCTTCHHHHHHHHHHHHTTSCEEC
T ss_pred CccccEEEEE--CCCCCCCCCEEEECHHHHHHHHHHHHhhHHhhCCCCcceEEEecCCCchhhhHHHHHHHHHcCCEEEC
Confidence 3455555433 156666654 5688888888877777777789999999999888632 223445555888996555
Q ss_pred cCCCCChh-----------------------hHHHHhhcccceEEEEccchhhhhhcccc---ccccCccEEEEec
Q 006115 131 LYDTLGPG-----------------------AVNFILDHAEIDFVFVQDKKVKELLSPDC---RSAQRLRVMVCFT 180 (660)
Q Consensus 131 i~~~~~~~-----------------------~l~~~l~~~~~~~vi~~~~~~~~~~~~~~---~~~~~~~~i~~~~ 180 (660)
.+ .++. .+..++++.++.++++.......+.+... .....++.++.-.
T Consensus 167 ~~--~dp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~t~l~~~Ps~~~~l~~~~~~~~~~~~~lr~i~~gG 240 (369)
T 3hgu_A 167 ID--IDPRWVKRSLSEGDTATVRKYTHHLVDQVQNTLMNQDIRFLVTTPPVLRELLKRPEVVLQMKQSLAQITLGG 240 (369)
T ss_dssp CC--CCHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHSCEEEEEECHHHHHHHTTCHHHHHHHHHHCSEEEEES
T ss_pred cc--CChHHHHHhhcccchhhhHHHHHHHHHHHHHHHHhCCCCEEEeCHHHHHHHHhhhhhhccccCCeeEEEECC
Confidence 43 3343 66668899999999999887776654321 1234455555544
No 47
>1mdb_A 2,3-dihydroxybenzoate-AMP ligase; adenylation domain, peptide synthetase, antibiotic biosynthesis, siderophore formation; HET: AMP DBH; 2.15A {Bacillus subtilis} SCOP: e.23.1.1 PDB: 1md9_A* 1mdf_A
Probab=72.09 E-value=33 Score=36.38 Aligned_cols=121 Identities=7% Similarity=-0.065 Sum_probs=82.8
Q ss_pred CCCCCceeeeccccCCCCCc--eEEeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEeCChhhHH--H-HHHHHHhCCCeEe
Q 006115 55 YPGNRMLGWRPFVDGKFGPY--VWKTYKEVYEEVLQIVSALRASGAEPGCRVGIYGANCPQWV--E-AMEACNALSLICV 129 (660)
Q Consensus 55 ~pd~~a~~~~~~~~~~~~~~--~~~Ty~el~~~~~~lA~~L~~~gv~~gd~V~l~~~n~~~~~--~-~~lA~~~~G~~~v 129 (660)
.|+.+|++.. -.|.+|.. ..+|.+.+...+..... ..++.++|++...+|-+..+- . .+++++..|+.++
T Consensus 180 ~~~d~a~i~~--TSGTTG~PKgV~~th~~~~~~~~~~~~---~~~~~~~d~~l~~~p~~h~~~~~~~~~~~~l~~G~~~v 254 (539)
T 1mdb_A 180 KSSDVAFLQL--SGGSTGLSKLIPRTHDDYIYSLKRSVE---VCWLDHSTVYLAALPMAHNYPLSSPGVLGVLYAGGRVV 254 (539)
T ss_dssp CTTSEEEEEE--CCCSSSSCCEEEEEHHHHHHHHHHHHH---HHTCCTTCEEEECSCTTSHHHHHSSHHHHHHHTTCEEE
T ss_pred CcCceEEEEe--CCCcCCCCcEEEEehHHHHHHHHHHHH---hhCCCCCCEEEEeecccccchhhHHHHHHHHHhCCEEE
Confidence 4566665543 14555553 36899888776655443 347889999888888664433 2 4788899999988
Q ss_pred ecCCCCChhhHHHHhhcccceEEEEccchhhhhhccc---cccccCccEEEEecC
Q 006115 130 PLYDTLGPGAVNFILDHAEIDFVFVQDKKVKELLSPD---CRSAQRLRVMVCFTS 181 (660)
Q Consensus 130 ~i~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~---~~~~~~~~~i~~~~~ 181 (660)
..+ ..+++.+...+++.++.+++........+.... ...++.++.++.-..
T Consensus 255 ~~~-~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~l~~lr~~~~gG~ 308 (539)
T 1mdb_A 255 LSP-SPSPDDAFPLIEREKVTITALVPPLAMVWMDAASSRRDDLSSLQVLQVGGA 308 (539)
T ss_dssp ECS-SSSHHHHHHHHHHHTCSEEEECHHHHHHHHHHHHHCCCCCTTCCEEEEESS
T ss_pred ECC-CCCHHHHHHHHHHcCCeEEEccHHHHHHHHhCccccCCCccceeEEEEcCC
Confidence 764 467888999999999999999888776554322 223456666665544
No 48
>2d1s_A Luciferase, luciferin 4-monooxygenase; alpha/beta, beta barrel, alpha+beta, riken structural genomics/proteomics initiative, RSGI; HET: SLU; 1.30A {Luciola cruciata} PDB: 2d1q_A* 2d1r_A* 2d1t_A*
Probab=70.93 E-value=17 Score=38.81 Aligned_cols=121 Identities=12% Similarity=-0.012 Sum_probs=81.6
Q ss_pred CCCceeeeccccCCCCCc--eEEeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEeCChhhHH--HHHHHHHhCCCeEeecC
Q 006115 57 GNRMLGWRPFVDGKFGPY--VWKTYKEVYEEVLQIVSALRASGAEPGCRVGIYGANCPQWV--EAMEACNALSLICVPLY 132 (660)
Q Consensus 57 d~~a~~~~~~~~~~~~~~--~~~Ty~el~~~~~~lA~~L~~~gv~~gd~V~l~~~n~~~~~--~~~lA~~~~G~~~v~i~ 132 (660)
+.+|++.. -.|.+|.. ..+|.+.+...+......+...++.++|++...+|-+..+- ..+++++ .|+.++..+
T Consensus 192 ~d~a~i~~--TSGTTG~PKgv~~sh~~~~~~~~~~~~~~~~~~~~~~d~~l~~~p~~h~~g~~~~~~~~l-~G~~~v~~~ 268 (548)
T 2d1s_A 192 EQVALIMN--SSGSTGLPKGVQLTHENIVTRFSHARDPIYGNQVSPGTAVLTVVPFHHGFGMFTTLGYLI-CGFRVVMLT 268 (548)
T ss_dssp TCEEEEEC--CSSCSSSCCCEEEEHHHHHHHHHHHTCTTTSCCCCTTCEEEECSCTTSHHHHHHHHHHHH-TTCEEEECC
T ss_pred CCEEEEEe--CCCCCCCCCEEEecHHHHHHHHHHhhchhhccCCCccceEEEeccHHHHHHHHHHHHHHh-cCcEEEEcC
Confidence 66665543 14555543 46899988776665544433358889999888887664433 3356777 999988775
Q ss_pred CCCChhhHHHHhhcccceEEEEccchhhhhhcccc---ccccCccEEEEecC
Q 006115 133 DTLGPGAVNFILDHAEIDFVFVQDKKVKELLSPDC---RSAQRLRVMVCFTS 181 (660)
Q Consensus 133 ~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~~---~~~~~~~~i~~~~~ 181 (660)
..+++.+...|++.++.+++.....+..+..... ..+..++.++.-..
T Consensus 269 -~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~l~~lr~i~~gG~ 319 (548)
T 2d1s_A 269 -KFDEETFLKTLQDYKCTSVILVPTLFAILNKSELLNKYDLSNLVEIASGGA 319 (548)
T ss_dssp -CCCHHHHHHHHHHTTEEEEEECHHHHHHHHHCSCGGGSCCTTCCEEEECSS
T ss_pred -CCCHHHHHHHHHHcCCcEEEecHHHHHHHHhCcccccccccceeEEEEcCc
Confidence 5678899999999999999999887776644321 13455666655443
No 49
>4dg8_A PA1221; ANL superfamily, adenylation domain, peptidyl carrier protei ribosomal peptide synthetase, NRPS, valine adenylation, LIG; HET: AMP; 2.15A {Pseudomonas aeruginosa} PDB: 4dg9_A*
Probab=66.85 E-value=26 Score=38.05 Aligned_cols=121 Identities=13% Similarity=0.030 Sum_probs=85.9
Q ss_pred CCCCCceee-eccccCCCCCce--EEeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEeCChhhHH-HHHHHHHhCCCeEee
Q 006115 55 YPGNRMLGW-RPFVDGKFGPYV--WKTYKEVYEEVLQIVSALRASGAEPGCRVGIYGANCPQWV-EAMEACNALSLICVP 130 (660)
Q Consensus 55 ~pd~~a~~~-~~~~~~~~~~~~--~~Ty~el~~~~~~lA~~L~~~gv~~gd~V~l~~~n~~~~~-~~~lA~~~~G~~~v~ 130 (660)
.|+.+|++. . .|.+|..+ .+|.+.+...+. .....++.++|++...++-+.+.- ..+++.+..|+.++.
T Consensus 162 ~~~d~a~iiyT---SGSTG~PKgV~~th~~l~~~~~----~~~~~~~~~~d~~l~~~p~~~~~~~~~~~~~l~~G~~~v~ 234 (620)
T 4dg8_A 162 AADQIAYINFS---SGTTGRPKAIACTHAGITRLCL----GQSFLAFAPQMRFLVNSPLSFDAATLEIWGALLNGGCCVL 234 (620)
T ss_dssp CTTSEEEEEEE---BSSSSSCEEEEEEHHHHHHHHS----SCGGGTTCTTCEEEECSCTTSTHHHHHHHHHHTTTCEEEE
T ss_pred CCCCeEEEEEC---CCccccCeEEEEchHHHHHHHH----HHHhhCCCCCCEEEEECccCHHHHHHHHHHHHhcCCEEEe
Confidence 356666544 4 56666654 578877654332 222358899999999988876543 347888899998877
Q ss_pred cC-CCCChhhHHHHhhcccceEEEEccchhhhhhccccccccCccEEEEecCC
Q 006115 131 LY-DTLGPGAVNFILDHAEIDFVFVQDKKVKELLSPDCRSAQRLRVMVCFTSL 182 (660)
Q Consensus 131 i~-~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~~~~~~~~~~i~~~~~~ 182 (660)
.+ ...+++.+...+++.++.+++........+.......+..++.++.-...
T Consensus 235 ~~~~~~~~~~~~~~i~~~~vt~~~~~Ps~~~~l~~~~~~~l~~lr~v~~gGe~ 287 (620)
T 4dg8_A 235 NDLGPLDPGVLRQLIGERGADSAWLTASLFNTLVDLDPDCLGGLRQLLTGGDI 287 (620)
T ss_dssp CCSSSCCHHHHHHHHHTTCCCEEEEEHHHHHHHHHHCGGGGTTCSEEEEESSC
T ss_pred CccccCCHHHHHHHHHHhCCcEEEccHHHHHHHHhcChhhCCCccEEEEEeCc
Confidence 64 35678899999999999999999887776655445556777777776653
No 50
>3o83_A Peptide arylation enzyme; ligase, adenylation of 2,3-dihydroxybenzoate and transfer to pantetheine cofactor of BASF; HET: IXN; 1.90A {Acinetobacter baumannii} SCOP: e.23.1.0 PDB: 3o82_A* 3o84_A* 3u16_A* 3u17_A*
Probab=66.68 E-value=33 Score=36.40 Aligned_cols=120 Identities=11% Similarity=-0.031 Sum_probs=81.0
Q ss_pred CCCCceeeeccccCCCCCce--EEeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEeCChhhHHH---HHHHHHhCCCeEee
Q 006115 56 PGNRMLGWRPFVDGKFGPYV--WKTYKEVYEEVLQIVSALRASGAEPGCRVGIYGANCPQWVE---AMEACNALSLICVP 130 (660)
Q Consensus 56 pd~~a~~~~~~~~~~~~~~~--~~Ty~el~~~~~~lA~~L~~~gv~~gd~V~l~~~n~~~~~~---~~lA~~~~G~~~v~ 130 (660)
++.+|++.. -.|.+|..+ .+|...+...+...+. ..++.++|++...+|-+..+-. .+++++..|+.++.
T Consensus 190 ~~d~a~i~~--TSGTTG~PKgv~~sh~~~~~~~~~~~~---~~~~~~~d~~l~~~p~~h~~~~~~~~~~~~l~~G~~~v~ 264 (544)
T 3o83_A 190 ADEVAFFQL--SGGSTGTPKLIPRTHNDYDYSVRASAE---ICGLNSNTRLLCALPAPHNFMLSSPGALGVLHAGGCVVM 264 (544)
T ss_dssp TTSEEEEEE--CCC--CCCCEEEEEHHHHHHHHHHHHH---HTTCCTTCEEEECSCTTSHHHHHSSHHHHHHHTTCEEEE
T ss_pred ccceEEEEE--CCCcccCCceEEechHHHHHHHHHHHH---HhCCCCCCeEEEecCcceEeecchHHHHHHHHcCCEEEE
Confidence 556665543 145555543 6889888777665544 3488999999988876544333 47888899998877
Q ss_pred cCCCCChhhHHHHhhcccceEEEEccchhhhhhccc---cccccCccEEEEecC
Q 006115 131 LYDTLGPGAVNFILDHAEIDFVFVQDKKVKELLSPD---CRSAQRLRVMVCFTS 181 (660)
Q Consensus 131 i~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~---~~~~~~~~~i~~~~~ 181 (660)
.+. ..+..+...+++.++.++.+.......+.... ...+..++.++.-..
T Consensus 265 ~~~-~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~~~~lr~i~~gG~ 317 (544)
T 3o83_A 265 APN-PEPLNCFSIIQRHQVNMASLVPSAVIMWLEKAAQYKDQIQSLKLLQVGGA 317 (544)
T ss_dssp CSS-CCHHHHHHHHHHHTCCEEEECHHHHHHHHHHHTTTHHHHTTCCEEEEESS
T ss_pred CCC-CCHHHHHHHHHHHCCCEEEechHHHHHHHhchhhccccCCcceEEEEcCC
Confidence 654 57788888999999999999888766554322 223456666666554
No 51
>3r44_A Fatty acyl COA synthetase FADD13 (fatty-acyl-COA synthetase); ligase; HET: HIS; 1.80A {Mycobacterium tuberculosis} PDB: 3t5c_A 3t5b_A
Probab=66.46 E-value=37 Score=35.67 Aligned_cols=118 Identities=8% Similarity=-0.059 Sum_probs=77.7
Q ss_pred CCCCcee-eeccccCCCCCce--EEeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEeCChhhHHH--HHHHHHhCCCeEee
Q 006115 56 PGNRMLG-WRPFVDGKFGPYV--WKTYKEVYEEVLQIVSALRASGAEPGCRVGIYGANCPQWVE--AMEACNALSLICVP 130 (660)
Q Consensus 56 pd~~a~~-~~~~~~~~~~~~~--~~Ty~el~~~~~~lA~~L~~~gv~~gd~V~l~~~n~~~~~~--~~lA~~~~G~~~v~ 130 (660)
|+.+|++ +. .|.+|..+ .+|...+...+..++.. .++.++|++...+|-...+-. .+++++ .|+.++.
T Consensus 169 ~~d~a~i~~T---SGTTG~PKgV~~sh~~l~~~~~~~~~~---~~~~~~d~~l~~~p~~~~~~~~~~~~~~~-~G~~~v~ 241 (517)
T 3r44_A 169 GDDNLFIMYT---SGTTGHPKGVVHTHESVHSAASSWAST---IDVRYRDRLLLPLPMFHVAALTTVIFSAM-RGVTLIS 241 (517)
T ss_dssp TTSEEEEEEE---CC---CCEEEEEEHHHHHHHHHHHHHH---SCCCTTCEEEECSCTTSHHHHHHHHHHHH-HTCEEEE
T ss_pred CCCeEEEEEC---CcccccCceeeeeHHHHHHHHHHHHHh---cCCCCCCEEEEeCchHHHHHHHHHHHHHh-cCeEEEE
Confidence 4555544 44 56666544 68888887776655444 488999999988887654433 345555 8888777
Q ss_pred cCCCCChhhHHHHhhcccceEEEEccchhhhhhccc---cccccCccEEEEecC
Q 006115 131 LYDTLGPGAVNFILDHAEIDFVFVQDKKVKELLSPD---CRSAQRLRVMVCFTS 181 (660)
Q Consensus 131 i~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~---~~~~~~~~~i~~~~~ 181 (660)
. +...+..+...+++.++.++.+.......+.... ...++.++.++.-..
T Consensus 242 ~-~~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~~~~lr~i~~gGe 294 (517)
T 3r44_A 242 M-PQFDATKVWSLIVEERVCIGGAVPAILNFMRQVPEFAELDAPDFRYFITGGA 294 (517)
T ss_dssp C-SSCCHHHHHHHHHHTTCCEEEECHHHHHHHHHSHHHHHCCCTTCCEEEECSS
T ss_pred e-CCCCHHHHHHHHHHhCCeEEEeHHHHHHHHHhCcccccCCCCcccEEEECCC
Confidence 6 4578889999999999999999888776554321 123345666655543
No 52
>3g7s_A Long-chain-fatty-acid--COA ligase (FADD-1); protein structure initiative, PSI-II, NYSGXRC, 11193J, structural genomics; 2.15A {Archaeoglobus fulgidus dsm 4304}
Probab=65.34 E-value=41 Score=35.63 Aligned_cols=107 Identities=9% Similarity=-0.062 Sum_probs=77.7
Q ss_pred CCCCeEEEEecCCCCCCCceeeeccHhHHHHhhhcccccccccCCCCCCcEEEEecChhhHHHHHHHHHHhhcCcEEEEe
Q 006115 218 QPFNICTIMYTSGTSGDPKGVVLTHETIATFVSGVDLFLDQFEDKMTVDDVYLSFLPLAHILDRVIEEYFFRRGASVGYY 297 (660)
Q Consensus 218 ~~~~~a~i~~TSGTTG~pK~v~~th~~l~~~~~~~~~~~~~~~~~~~~~d~~l~~~p~~~~~g~~~~~~~l~~G~~~v~~ 297 (660)
.++.+|++....+..+ -..-.+|.+.+...+..+...+... ++.++|++...++-..- -....+.++..|+..+.+
T Consensus 32 ~p~~~A~~~~~~~~~~-~~~~~~Ty~el~~~~~~lA~~L~~~--Gv~~gd~V~i~~~~~~~-~~~~~lA~~~~G~~~vpl 107 (549)
T 3g7s_A 32 FGEKTAIISAEPKFPS-EFPESMNFLEICEVTKKLASGISRK--GVRKGEHVGVCIPNSID-YVMTIYALWRVAATPVPI 107 (549)
T ss_dssp HTTSEEEEEESSCCCC-SSCSEEEHHHHHHHHHHHHHHHHHT--TCCTTCEEEEECCSSHH-HHHHHHHHHHTTCEEEEC
T ss_pred CCCceEEEeCCCcccc-cccceeeHHHHHHHHHHHHHHHHHc--CCCCCCEEEEECCCCHH-HHHHHHHHHHhCCEEEcc
Confidence 3667777665322111 1135688898888888887776543 78899999999887632 233456778899999888
Q ss_pred cC--ChHHHHHHhhhhcCeEEEechHHHHHHHH
Q 006115 298 HG--DLNALRDDLMELKPTLLAGVPRVFEKIHE 328 (660)
Q Consensus 298 ~~--~~~~~~~~i~~~~~t~l~~~p~~~~~l~~ 328 (660)
+. ....+...++..+++.++..+.....+..
T Consensus 108 ~~~~~~~~l~~il~~~~~~~~i~~~~~~~~~~~ 140 (549)
T 3g7s_A 108 NPMYKSFELEHILNDSEATTLVVHSMLYENFKP 140 (549)
T ss_dssp CTTCCHHHHHHHHHHTTCSEEEEEGGGHHHHHH
T ss_pred CCCCCHHHHHHHHHhcCCCEEEEChHHHHHHHH
Confidence 76 88999999999999999999877665543
No 53
>4gs5_A Acyl-COA synthetase (AMP-forming)/AMP-acid ligase protein; structural genomics, PSI-biology; 2.02A {Dyadobacter fermentans}
Probab=64.79 E-value=35 Score=33.95 Aligned_cols=108 Identities=19% Similarity=0.092 Sum_probs=71.0
Q ss_pred HHHHHHHHHHhCCCCCcee-eeccccCCCCCce--EEeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEeCChhhH-HHHHH
Q 006115 44 AWDIFSMSVQKYPGNRMLG-WRPFVDGKFGPYV--WKTYKEVYEEVLQIVSALRASGAEPGCRVGIYGANCPQW-VEAME 119 (660)
Q Consensus 44 i~~~l~~~a~~~pd~~a~~-~~~~~~~~~~~~~--~~Ty~el~~~~~~lA~~L~~~gv~~gd~V~l~~~n~~~~-~~~~l 119 (660)
..+.+..| +.|.+|++ +. .|.+|..+ .+|.+.+...+..++. ..+++++|++...+|-+..+ +..++
T Consensus 27 ~~~~~~~w---~~d~~a~Il~T---SGTTG~PKgV~~th~~l~~~~~~~~~---~~~~~~~d~~l~~~pl~h~~gl~~~~ 97 (358)
T 4gs5_A 27 AYDFMEKW---LGGAREFVLHT---SGSTGMPKPITVTRAQLAASAAMTGK---ALSLGPGTRALVCLNVGYIAGLMMLV 97 (358)
T ss_dssp HHHHHHHH---HHTCSEEEEEE---ECTTSSEEEEEEEHHHHHHHHHHHHH---HTTCCTTCEEEECSCTTSHHHHHHHH
T ss_pred hhhHhhcc---CCCCCEEEEEC---CcccccCcEEEEeHHHHHHHHHHHHH---HhCCCCCCEEEEECChHHHHHHHHHH
Confidence 33444444 34566654 44 56677654 6899988776655443 45889999999888766433 34456
Q ss_pred HHHhCCCeEeecCCCCChhhHHHHhhcccceEEEEccchhhhhh
Q 006115 120 ACNALSLICVPLYDTLGPGAVNFILDHAEIDFVFVQDKKVKELL 163 (660)
Q Consensus 120 A~~~~G~~~v~i~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~ 163 (660)
..+..|+..+..++... ....+++.++.++.........+.
T Consensus 98 ~~l~~g~~~~~~~~~~~---~~~~i~~~~~t~~~~~P~~l~~ll 138 (358)
T 4gs5_A 98 RGMELDWELTVTEPTAN---PLAGLDHADFDFVAMVPMQLQSIL 138 (358)
T ss_dssp HHHHHTCEEEEECCCSC---TTTTCSSCCCSEEEECHHHHHHHH
T ss_pred HHHHhCcEEEecCcccc---HHHHHHHhCCeEEEcChHHHHHhh
Confidence 66777887777665433 244678889999998887666553
No 54
>3ni2_A 4-coumarate:COA ligase; 4CL, phenylpropanoid biosynthesis; HET: AYL EPE; 1.90A {Populus tomentosa} PDB: 3a9v_A* 3a9u_A*
Probab=64.60 E-value=30 Score=36.57 Aligned_cols=101 Identities=20% Similarity=0.158 Sum_probs=76.2
Q ss_pred CCCCeEEEEecCCCCCCCceeeeccHhHHHHhhhcccccccccCCCCCCcEEEEecChhhHHHHHHHHHHhhcCcEEEEe
Q 006115 218 QPFNICTIMYTSGTSGDPKGVVLTHETIATFVSGVDLFLDQFEDKMTVDDVYLSFLPLAHILDRVIEEYFFRRGASVGYY 297 (660)
Q Consensus 218 ~~~~~a~i~~TSGTTG~pK~v~~th~~l~~~~~~~~~~~~~~~~~~~~~d~~l~~~p~~~~~g~~~~~~~l~~G~~~v~~ 297 (660)
.++.+|++.. .+| -.+|.+.+...+..+...+... ++.++|++...++...- .....+.++..|+..+.+
T Consensus 35 ~p~~~a~~~~---~~~----~~~Ty~el~~~~~~lA~~L~~~--Gv~~gd~V~i~~~~~~~-~~~~~la~~~~Gav~vpl 104 (536)
T 3ni2_A 35 HSSKPCLING---ANG----DVYTYADVELTARRVASGLNKI--GIQQGDVIMLFLPSSPE-FVLAFLGASHRGAIITAA 104 (536)
T ss_dssp STTSEEEEET---TTC----CEEEHHHHHHHHHHHHHHHHHT--TCCTTCEEEEECCSSHH-HHHHHHHHHHHTCEEEEC
T ss_pred CCCceEEEEC---CCC----CEEEHHHHHHHHHHHHHHHHHc--CCCCCCEEEEEcCCcHH-HHHHHHHHHHhCCEEecc
Confidence 4677776642 222 4589999888888877776543 78899999999887632 233456678899998888
Q ss_pred cC--ChHHHHHHhhhhcCeEEEechHHHHHHHH
Q 006115 298 HG--DLNALRDDLMELKPTLLAGVPRVFEKIHE 328 (660)
Q Consensus 298 ~~--~~~~~~~~i~~~~~t~l~~~p~~~~~l~~ 328 (660)
+. ....+...++..++..++........+..
T Consensus 105 ~~~~~~~~l~~~l~~~~~~~~i~~~~~~~~~~~ 137 (536)
T 3ni2_A 105 NPFSTPAELAKHAKASRAKLLITQACYYEKVKD 137 (536)
T ss_dssp CTTCCHHHHHHHHHHHTEEEEEECGGGTHHHHH
T ss_pred CCCCCHHHHHHHHHhcCCEEEEEChHHHHHHHH
Confidence 76 88999999999999999998877666544
No 55
>3e7w_A D-alanine--poly(phosphoribitol) ligase subunit 1; DLTA, non-ribosomal peptide synthetase, NRPS, adenylation domain, D-alanylation; HET: AMP; 2.28A {Bacillus subtilis} PDB: 3e7x_A*
Probab=62.89 E-value=45 Score=34.95 Aligned_cols=120 Identities=8% Similarity=-0.112 Sum_probs=82.0
Q ss_pred CCCCcee-eeccccCCCCCce--EEeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEeCChhhHH-HHHHHHHhCCCeEeec
Q 006115 56 PGNRMLG-WRPFVDGKFGPYV--WKTYKEVYEEVLQIVSALRASGAEPGCRVGIYGANCPQWV-EAMEACNALSLICVPL 131 (660)
Q Consensus 56 pd~~a~~-~~~~~~~~~~~~~--~~Ty~el~~~~~~lA~~L~~~gv~~gd~V~l~~~n~~~~~-~~~lA~~~~G~~~v~i 131 (660)
++.+|++ +. .|.+|..+ .+|...+...+..+. ...++.++|++...+|-+..+- ..+++++..|+.++.+
T Consensus 142 ~~~~a~i~~T---SGTTG~PKgV~~sh~~l~~~~~~~~---~~~~~~~~d~~l~~~p~~~~~~~~~~~~~l~~G~~~~~~ 215 (511)
T 3e7w_A 142 EHETFYIIYT---SGSTGNPKGVQISAANLQSFTDWIC---ADFPVSGGKIFLNQAPFSFDLSVMDLYPCLQSGGTLHCV 215 (511)
T ss_dssp TTSEEEEEEE---CCTTSSCEEEEEEHHHHHHHHHHHH---HHSTTTTTCEEEECSCTTSTHHHHHHHHHHHTTCEEEEC
T ss_pred CCCeEEEEEC---CCCCCCCCEEEEcHHHHHHHHHHHH---HhcCCCccceEEEeCCccHHHHHHHHHHHHhcCCEEEEc
Confidence 4555554 44 56666654 678888876655443 3458889999998888775443 4578889999998877
Q ss_pred CCC--CChhhHHHHhhcccceEEEEccchhhhhhccc---cccccCccEEEEecC
Q 006115 132 YDT--LGPGAVNFILDHAEIDFVFVQDKKVKELLSPD---CRSAQRLRVMVCFTS 181 (660)
Q Consensus 132 ~~~--~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~---~~~~~~~~~i~~~~~ 181 (660)
+.. ..+..+...+++.++.+++........+.... ...+..++.++....
T Consensus 216 ~~~~~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~~~~l~~~~~~G~ 270 (511)
T 3e7w_A 216 TKDAVNKPKVLFEELKKSGLNVWTSTPSFVQMCLMDPGFSQDLLPHADTFMFCGE 270 (511)
T ss_dssp CHHHHHSHHHHHHHHHHHCCSEEEECHHHHHHHHTSTTCSTTTCTTCCEEEECSS
T ss_pred ChhhhcCHHHHHHHHHHcCCcEEEecHHHHHHHHhccccccccCCcccEEEEecC
Confidence 653 46778888999999999999888776654332 223345555555443
No 56
>1v25_A Long-chain-fatty-acid-COA synthetase; ligase, structural genomics, riken structural genomics/proteomics initiative, RSGI; HET: ANP; 2.30A {Thermus thermophilus} SCOP: e.23.1.1 PDB: 1ult_A* 1v26_A*
Probab=62.87 E-value=43 Score=35.45 Aligned_cols=101 Identities=10% Similarity=-0.127 Sum_probs=74.6
Q ss_pred CCCCeEEEEecCCCCCCCceeeeccHhHHHHhhhcccccccccCCCCCCcEEEEecChhhHHHHHHHHHHhhcCcEEEEe
Q 006115 218 QPFNICTIMYTSGTSGDPKGVVLTHETIATFVSGVDLFLDQFEDKMTVDDVYLSFLPLAHILDRVIEEYFFRRGASVGYY 297 (660)
Q Consensus 218 ~~~~~a~i~~TSGTTG~pK~v~~th~~l~~~~~~~~~~~~~~~~~~~~~d~~l~~~p~~~~~g~~~~~~~l~~G~~~v~~ 297 (660)
.++.+|++....+ ....+|...+...+..+...+... ++.++|++...++...- .....+.++..|+..+.+
T Consensus 31 ~p~~~a~~~~~~~-----~~~~~Ty~el~~~~~~lA~~L~~~--Gv~~gd~V~i~~~n~~e-~~~~~lA~~~~Gav~vpl 102 (541)
T 1v25_A 31 FGRKEVVSRLHTG-----EVHRTTYAEVYQRARRLMGGLRAL--GVGVGDRVATLGFNHFR-HLEAYFAVPGMGAVLHTA 102 (541)
T ss_dssp STTCEEEEECTTS-----CEEEEEHHHHHHHHHHHHHHHHHT--TCCTTCEEEEECCSSHH-HHHHHHHHHHTTCEEEEC
T ss_pred CCCceEEEEecCC-----CCceecHHHHHHHHHHHHHHHHHc--CCCCCCEEEEEcCCcHH-HHHHHHHHHhcCcEEEec
Confidence 3556666543211 245789999888888877766543 78899999999886632 233456678889998888
Q ss_pred cC--ChHHHHHHhhhhcCeEEEechHHHHHH
Q 006115 298 HG--DLNALRDDLMELKPTLLAGVPRVFEKI 326 (660)
Q Consensus 298 ~~--~~~~~~~~i~~~~~t~l~~~p~~~~~l 326 (660)
+. ....+...++..++.+++..+.....+
T Consensus 103 ~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~ 133 (541)
T 1v25_A 103 NPRLSPKEIAYILNHAEDKVLLFDPNLLPLV 133 (541)
T ss_dssp CTTSCHHHHHHHHHHHTCSEEEECGGGHHHH
T ss_pred CcccCHHHHHHHHHhCCCcEEEEChhHHHHH
Confidence 76 789999999999999999988766544
No 57
>3ivr_A Putative long-chain-fatty-acid COA ligase; structural genomics, PSI-2, protein S initiative, fatty acid synthesis; HET: GOL; 2.00A {Rhodopseudomonas palustris} SCOP: e.23.1.0
Probab=62.57 E-value=30 Score=36.25 Aligned_cols=98 Identities=12% Similarity=-0.036 Sum_probs=75.6
Q ss_pred CCCCeEEEEecCCCCCCCceeeeccHhHHHHhhhcccccccccCCCCCCcEEEEecChhhHHHHHHHHHHhhcCcEEEEe
Q 006115 218 QPFNICTIMYTSGTSGDPKGVVLTHETIATFVSGVDLFLDQFEDKMTVDDVYLSFLPLAHILDRVIEEYFFRRGASVGYY 297 (660)
Q Consensus 218 ~~~~~a~i~~TSGTTG~pK~v~~th~~l~~~~~~~~~~~~~~~~~~~~~d~~l~~~p~~~~~g~~~~~~~l~~G~~~v~~ 297 (660)
.++.+|++. ..-.+|.+.+...+..+...+... ++.++|++...++...- -....+.++..|+..+.+
T Consensus 19 ~pd~~Al~~---------~~~~~Ty~eL~~~~~~lA~~L~~~--Gv~~gd~V~i~~~~~~~-~~~~~lA~~~~Ga~~vpl 86 (509)
T 3ivr_A 19 FPDRTAFMV---------DGVRLTHRDYLARAERLASGLLRD--GVHTGDRVAILSQNCSE-MIELIGAVALIGAILLPV 86 (509)
T ss_dssp STTSEEEEE---------TTEEEEHHHHHHHHHHHHHHHHHT--TCCTTCEEEEECCSCHH-HHHHHHHHHHTTCEEEEC
T ss_pred CCCceEEEE---------CCcEEcHHHHHHHHHHHHHHHHHc--CCCCCCEEEEEcCCCHH-HHHHHHHHHHhCCEEEec
Confidence 466777764 125789999998888887777544 78899999999887632 233466678899999888
Q ss_pred cC--ChHHHHHHhhhhcCeEEEechHHHHHHH
Q 006115 298 HG--DLNALRDDLMELKPTLLAGVPRVFEKIH 327 (660)
Q Consensus 298 ~~--~~~~~~~~i~~~~~t~l~~~p~~~~~l~ 327 (660)
+. +...+...++..++.+++..+.....+.
T Consensus 87 ~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~ 118 (509)
T 3ivr_A 87 NYRLNADEIAFVLGDGAPSVVVAGTDYRDIVA 118 (509)
T ss_dssp CTTSCHHHHHHHHHHHCEEEEEECSTTHHHHH
T ss_pred CCCCCHHHHHHHHHhcCceEEEECcchhhhHH
Confidence 76 8899999999999999999887766543
No 58
>3rix_A Luciferase, luciferin 4-monooxygenase; oxidoreductase, photoprotein, luminescence, aspulvinone, natural product extracts; HET: 923; 1.70A {Photinus pyralis} SCOP: e.23.1.1 PDB: 1ba3_A 1lci_A* 4e5d_A* 3ies_A* 3iep_A* 3ier_A* 4g36_A* 4g37_A* 3qya_A
Probab=62.35 E-value=14 Score=39.45 Aligned_cols=88 Identities=10% Similarity=0.008 Sum_probs=69.5
Q ss_pred eeeccHhHHHHhhhcccccccccCCCCCCcEEEEecChhhHHHHHHHHHHhhcCcEEEEecC--ChHHHHHHhhhhcCeE
Q 006115 238 VVLTHETIATFVSGVDLFLDQFEDKMTVDDVYLSFLPLAHILDRVIEEYFFRRGASVGYYHG--DLNALRDDLMELKPTL 315 (660)
Q Consensus 238 v~~th~~l~~~~~~~~~~~~~~~~~~~~~d~~l~~~p~~~~~g~~~~~~~l~~G~~~v~~~~--~~~~~~~~i~~~~~t~ 315 (660)
..+|.+.+...+..+...+... ++.++|++...++...- -....+.++..|+..+.++. ....+...++..++++
T Consensus 49 ~~~Ty~el~~~~~~lA~~L~~~--Gv~~gd~V~i~~~n~~e-~~~~~lA~~~~Gav~vpl~~~~~~~~l~~~l~~~~~~~ 125 (550)
T 3rix_A 49 VNITYAEYFEMSVRLAEAMKRY--GLNTNHRIVVCSENSLQ-FFMPVLGALFIGVAVAPANDIYNERELLNSMNISQPTV 125 (550)
T ss_dssp CEEEHHHHHHHHHHHHHHHHHH--TCCTTCEEEEECSSCTT-THHHHHHHHHHTCEEEECCTTCCHHHHHHHHHHHCCSE
T ss_pred cEeEHHHHHHHHHHHHHHHHHh--CCCCCCEEEEEcCCccc-HHHHHHHHHHcCCEEeecCCcCCHHHHHHHHHhcCCeE
Confidence 4689999888888887776544 78899999999886532 22345667888999888876 8899999999999999
Q ss_pred EEechHHHHHHHH
Q 006115 316 LAGVPRVFEKIHE 328 (660)
Q Consensus 316 l~~~p~~~~~l~~ 328 (660)
++........+..
T Consensus 126 vi~~~~~~~~~~~ 138 (550)
T 3rix_A 126 VFVSKKGLQKILN 138 (550)
T ss_dssp EEECGGGHHHHHH
T ss_pred EEEcHHHHHHHHH
Confidence 9999887766544
No 59
>3fce_A D-alanine--poly(phosphoribitol) ligase subunit 1; DLTA, AMP-forming domain, adenylation, D-alanine protein ligase, ATP complex; HET: ATP; 1.90A {Bacillus cereus} PDB: 3fcc_A* 3dhv_A*
Probab=61.90 E-value=37 Score=35.64 Aligned_cols=121 Identities=9% Similarity=-0.057 Sum_probs=79.6
Q ss_pred CCCCceeeeccccCCCCCce--EEeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEeCChhhH-HHHHHHHHhCCCeEeecC
Q 006115 56 PGNRMLGWRPFVDGKFGPYV--WKTYKEVYEEVLQIVSALRASGAEPGCRVGIYGANCPQW-VEAMEACNALSLICVPLY 132 (660)
Q Consensus 56 pd~~a~~~~~~~~~~~~~~~--~~Ty~el~~~~~~lA~~L~~~gv~~gd~V~l~~~n~~~~-~~~~lA~~~~G~~~v~i~ 132 (660)
++.+|++.. -.|.+|..+ .+|...+...+.... ...++.++|++...+|-+..+ +..+++++..|+.++.++
T Consensus 143 ~~d~a~i~~--TSGTTG~PKgv~~th~~l~~~~~~~~---~~~~~~~~d~~l~~~p~~~~~~~~~~~~~l~~G~~~~~~~ 217 (512)
T 3fce_A 143 GDENFYIIY--TSGSTGNPKGVQITYNCLVSFTKWAV---EDFNLQTGQVFLNQAPFSFDLSVMDIYPSLVTGGTLWAID 217 (512)
T ss_dssp TTSEEEEEE--ECC----CEEEEEEHHHHHHHHHHHH---HHTTCCSSCEEEECSCTTSGGGHHHHHHHHHTTCEEEECC
T ss_pred CCCeEEEEE--CCCCCCCCceEEEehHHHHHHHHHHH---HhcCCCCCCEEEEeCCccHhHHHHHHHHHHhCCCEEEECC
Confidence 455555433 056665543 678888876655443 345889999999988876443 345788899999988876
Q ss_pred CC--CChhhHHHHhhcccceEEEEccchhhhhhccc---cccccCccEEEEecC
Q 006115 133 DT--LGPGAVNFILDHAEIDFVFVQDKKVKELLSPD---CRSAQRLRVMVCFTS 181 (660)
Q Consensus 133 ~~--~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~---~~~~~~~~~i~~~~~ 181 (660)
+. ..+..+...+++.++.+++........+.... ...++.++.++.-..
T Consensus 218 ~~~~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~~~~lr~~~~~G~ 271 (512)
T 3fce_A 218 KDMIARPKDLFASLEQSDIQVWTSTPSFAEMCLMEASFSESMLPNMKTFLFCGE 271 (512)
T ss_dssp HHHHHSHHHHHHHHHHHCCCEEEECHHHHHHHTTSTTCSTTTSTTCCEEEECSS
T ss_pred HHHhhCHHHHHHHHHHcCCcEEEecHHHHHHHHhhccccchhCccccEEEEecC
Confidence 53 46778889999999999999888776554322 223445666665543
No 60
>4gr5_A Non-ribosomal peptide synthetase; MBTH-like domain, adenylation domain, ligase, rossmann fold, binding; HET: APC TLA; 1.92A {Streptomyces lydicus} PDB: 4gr4_A
Probab=59.84 E-value=26 Score=37.48 Aligned_cols=122 Identities=10% Similarity=0.004 Sum_probs=85.3
Q ss_pred CCCCCceeeeccccCCCCCc--eEEeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEeCChhh-HHHHHHHHHhCCCeEeec
Q 006115 55 YPGNRMLGWRPFVDGKFGPY--VWKTYKEVYEEVLQIVSALRASGAEPGCRVGIYGANCPQ-WVEAMEACNALSLICVPL 131 (660)
Q Consensus 55 ~pd~~a~~~~~~~~~~~~~~--~~~Ty~el~~~~~~lA~~L~~~gv~~gd~V~l~~~n~~~-~~~~~lA~~~~G~~~v~i 131 (660)
.|+.+|++.. -.|.+|.. ..+|...+...... ....++.++|++...++-+.+ ....+++.+..|+.++..
T Consensus 212 ~~~d~a~i~~--TSGTTG~PKgV~~th~~l~~~~~~----~~~~~~~~~d~~l~~~p~~~~~~~~~~~~~l~~G~~~v~~ 285 (570)
T 4gr5_A 212 GPEDVACVMF--TSGSTGRPKGVMSPHRALTGTYLG----QDYAGFGPDEVFLQCSPVSWDAFGLELFGALLFGARCVLQ 285 (570)
T ss_dssp CTTSEEEEEC--CSSCCSSCCCEEEEHHHHHHHHSS----CCSSCCSTTCEEEECSCTTSSTHHHHHHHHHTTTCEEEEC
T ss_pred CCCCeEEEEE--CCcCCCCCeEEEEecHHHHHHHHh----hhhcCCCCCCEEEEecCccHHHHHHHHHHHHhcCCEEEEc
Confidence 4566665543 14555543 36788877433221 223488899999888887543 455678888999988877
Q ss_pred CC-CCChhhHHHHhhcccceEEEEccchhhhhhccccccccCccEEEEecCC
Q 006115 132 YD-TLGPGAVNFILDHAEIDFVFVQDKKVKELLSPDCRSAQRLRVMVCFTSL 182 (660)
Q Consensus 132 ~~-~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~~~~~~~~~~i~~~~~~ 182 (660)
+. ...+..+...+++.++.++.........+.+.....+..++.++.-...
T Consensus 286 ~~~~~~~~~~~~~i~~~~vt~~~~~P~~~~~l~~~~~~~~~~lr~~~~gG~~ 337 (570)
T 4gr5_A 286 SGQNPDPLEIGELVARHGVTMLQLSASLFNFLVDEVPEAFEGVRYAITGGEP 337 (570)
T ss_dssp SSSSCCHHHHHHHHHHHTCCEEEEEHHHHHHHHHHCGGGGTTCSEEEEESSC
T ss_pred CCccCCHHHHHHHHHHcCCcEEEecHHHHHHHHhhchhhCCCceEEEEeccc
Confidence 64 4577889999999999999999988877766555566777777776543
No 61
>3kxw_A Saframycin MX1 synthetase B; fatty acid AMP ligase, SGX, acyl adenylate, structural genom 2, protein structure initiative; HET: 1ZZ; 1.85A {Legionella pneumophila subsp} PDB: 3lnv_A*
Probab=58.95 E-value=37 Score=36.35 Aligned_cols=122 Identities=3% Similarity=-0.182 Sum_probs=82.6
Q ss_pred CCCCCceeeeccccCCCCCc--eEEeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEeCChhhHHH--HHHHHHhCCCeEee
Q 006115 55 YPGNRMLGWRPFVDGKFGPY--VWKTYKEVYEEVLQIVSALRASGAEPGCRVGIYGANCPQWVE--AMEACNALSLICVP 130 (660)
Q Consensus 55 ~pd~~a~~~~~~~~~~~~~~--~~~Ty~el~~~~~~lA~~L~~~gv~~gd~V~l~~~n~~~~~~--~~lA~~~~G~~~v~ 130 (660)
.|+.+|++.. -.|.+|.. ..+|...+...+..+.. ..++.++|++...+|-+..+-. .+++.+..|+.++.
T Consensus 165 ~~~d~a~i~~--TSGTTG~PKgV~~th~~l~~~~~~~~~---~~~~~~~d~~l~~~p~~h~~g~~~~~~~~l~~G~~~v~ 239 (590)
T 3kxw_A 165 KSNDIAFLQY--TSGSTMHPKGVMVSHHNLLDNLNKIFT---SFHMNDETIIFSWLPPHHDMGLIGCILTPIYGGIQAIM 239 (590)
T ss_dssp CTTSEEEEEE--CSSCSSSCCEEEEEHHHHHHHHHHHHH---HTTCCTTCEEEECSCTTSHHHHHTTTHHHHHHTCEEEE
T ss_pred CCCCeEEEEe--CcCCCCCceEEEeeHHHHHHHHHHHHH---hhCCCCcCeEEEecCCCcchhhHHHHHHHHhcCceEEE
Confidence 4566666543 15666654 36899988877665544 4588999999999888765543 37888999999888
Q ss_pred cCCCC---ChhhHHHHhhcccceEEEEccchhhhhhccc------cccccCccEEEEecC
Q 006115 131 LYDTL---GPGAVNFILDHAEIDFVFVQDKKVKELLSPD------CRSAQRLRVMVCFTS 181 (660)
Q Consensus 131 i~~~~---~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~------~~~~~~~~~i~~~~~ 181 (660)
.++.. .+..+...+++.++.++.+.......+.... ...+..++.++.-..
T Consensus 240 ~~~~~~~~~~~~~~~~i~~~~~t~~~~~p~~~~~l~~~~~~~~~~~~~l~~lr~~~~gg~ 299 (590)
T 3kxw_A 240 MSPFSFLQNPLSWLKHITKYKATISGSPNFAYDYCVKRIREEKKEGLDLSSWVTAFNGAE 299 (590)
T ss_dssp CCHHHHHHCTHHHHHHHHHHTCSEEEECTHHHHHHHHHCCGGGGTTCCCTTCCEEEECSS
T ss_pred eCHHHHHHCHHHHHHHHHHhCCeeecCChhHHHHHHHHhhhhhccCCCchhhHHHhhCCC
Confidence 76532 5678888999999999988776555443321 123455666655443
No 62
>3rg2_A Enterobactin synthase component E (ENTE), 2,3-DIH dihydroxybenzoate synthetase, isochroismatase...; adenylate-forming enzymes, ANL superfamily; HET: SVS PNS; 3.10A {Escherichia coli}
Probab=58.58 E-value=72 Score=34.34 Aligned_cols=120 Identities=10% Similarity=-0.040 Sum_probs=81.0
Q ss_pred CCCCceeeeccccCCCCCc--eEEeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEeCChhh--HHH-HHHHHHhCCCeEee
Q 006115 56 PGNRMLGWRPFVDGKFGPY--VWKTYKEVYEEVLQIVSALRASGAEPGCRVGIYGANCPQ--WVE-AMEACNALSLICVP 130 (660)
Q Consensus 56 pd~~a~~~~~~~~~~~~~~--~~~Ty~el~~~~~~lA~~L~~~gv~~gd~V~l~~~n~~~--~~~-~~lA~~~~G~~~v~ 130 (660)
|+.+|++.. -.|.+|.. ..+|...+...+..... ..++.++|++...++-+.. +.. .+++++..|+.++.
T Consensus 183 ~~~~a~ii~--TSGSTG~PKgV~~th~~~~~~~~~~~~---~~~~~~~~~~l~~~p~~~~~~~~~~~~~~~l~~G~~~v~ 257 (617)
T 3rg2_A 183 ADEVAYFQL--SGGTTGTPKLIPRTHNDYYYSVRRSVE---ICQFTQQTRYLCAIPAAHNYAMSSPGSLGVFLAGGTVVL 257 (617)
T ss_dssp TTSEEEEEE--CCCSSSSCCEEEEEHHHHHHHHHHHHH---HHTCCTTCEEEECSCTTSHHHHHSSHHHHHHHHTCEEEE
T ss_pred CCCeEEEEE--CCCcCCCCCEeehhHHHHHHHHHHHHH---hcCCCCcceEEEeccchhhhhhhHHHHHHHHHcCCEEEE
Confidence 466665443 05666654 36888888766655444 3478899999988885543 333 47888888998877
Q ss_pred cCCCCChhhHHHHhhcccceEEEEccchhhhhhcccc-----ccccCccEEEEecC
Q 006115 131 LYDTLGPGAVNFILDHAEIDFVFVQDKKVKELLSPDC-----RSAQRLRVMVCFTS 181 (660)
Q Consensus 131 i~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~~-----~~~~~~~~i~~~~~ 181 (660)
.+. .....+...+++.++.++.+.......+..... ..+..++.++.-..
T Consensus 258 ~~~-~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~~~l~~lr~i~~gGe 312 (617)
T 3rg2_A 258 AAD-PSATLCFPLIEKHQVNVTALVPPAVSLWLQALIEGESRAQLASLKLLQVGGA 312 (617)
T ss_dssp CSS-CCHHHHHHHHHHTTCCEEEECHHHHHHHHHHHHTTCCTTTTTTCCEEEEESS
T ss_pred eCC-CCHHHHHHHHHHhCCcEEEcchHHHHHHHHhhhcccccccCCCccEEEEcCC
Confidence 654 567788889999999999998877665543221 13456777666554
No 63
>3c5e_A Acyl-coenzyme A synthetase ACSM2A, mitochondrial; middle-chain acyl-COA synthetase, xenobiotic/medium-chain FA COA ligase; HET: ATP; 1.60A {Homo sapiens} PDB: 2vze_A 3b7w_A* 3day_A* 3eq6_A* 3eyn_A* 3gpc_A* 2wd9_A*
Probab=55.27 E-value=66 Score=34.28 Aligned_cols=121 Identities=12% Similarity=-0.044 Sum_probs=79.6
Q ss_pred CCCCceeeeccccCCCCCce--EEeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEeCChhhHHH--HHHHHHhCCCeEeec
Q 006115 56 PGNRMLGWRPFVDGKFGPYV--WKTYKEVYEEVLQIVSALRASGAEPGCRVGIYGANCPQWVE--AMEACNALSLICVPL 131 (660)
Q Consensus 56 pd~~a~~~~~~~~~~~~~~~--~~Ty~el~~~~~~lA~~L~~~gv~~gd~V~l~~~n~~~~~~--~~lA~~~~G~~~v~i 131 (660)
|+.+|++.. -.|.+|..+ .+|.. +....... .....++.++|++...++-+..+-. .+++.+..|+..+..
T Consensus 205 ~~d~a~i~~--TSGTTG~PKgV~~sh~-~~~~~~~~--~~~~~~~~~~d~~~~~~p~~~~~~~~~~~~~~l~~G~~~~~~ 279 (570)
T 3c5e_A 205 SQEASAIYF--TSGTSGLPKMAEHSYS-SLGLKAKM--DAGWTGLQASDIMWTISDTGWILNILCSLMEPWALGACTFVH 279 (570)
T ss_dssp TTSEEEEEE--CCCSSSSCCEEEEEHH-HHHHHHHH--HTTTTSCCTTCEEEECCCTTSHHHHHHTTHHHHHHTCEEEEE
T ss_pred CCCcEEEEE--CCCCCCCCCEEEechH-HHHhhhhh--hhhhcCCCCCceEEEcCchHHHHHHHHHHHHHHHhCceEEEe
Confidence 455555443 156666544 57877 43311111 1244588999999888887655433 467888889988776
Q ss_pred CC-CCChhhHHHHhhcccceEEEEccchhhhhhcccc--ccccCccEEEEecC
Q 006115 132 YD-TLGPGAVNFILDHAEIDFVFVQDKKVKELLSPDC--RSAQRLRVMVCFTS 181 (660)
Q Consensus 132 ~~-~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~~--~~~~~~~~i~~~~~ 181 (660)
.. ..++..+...|++.++.+++.....+..+..... ..+..++.++....
T Consensus 280 ~~~~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~~~lr~i~~gGe 332 (570)
T 3c5e_A 280 LLPKFDPLVILKTLSSYPIKSMMGAPIVYRMLLQQDLSSYKFPHLQNCVTVGE 332 (570)
T ss_dssp CCSSCCHHHHHHHHHHSCCCEEEECHHHHHHHHTSCTTTCCCTTCCEEEEESS
T ss_pred cCCCCCHHHHHHHHHHhCCeEEeccHHHHHHHHhccccccccccceEEEEcCC
Confidence 53 6788899999999999999999887776654321 12456666666554
No 64
>1t5h_X 4-chlorobenzoyl COA ligase; adenylate-forming coenzyme A ligase domain alternation confo change; 2.00A {Alcaligenes SP} SCOP: e.23.1.1 PDB: 1t5d_X 3cw9_A* 3cw8_X* 2qvz_X* 2qw0_X* 3dlp_X* 2qvx_X* 2qvy_X*
Probab=54.68 E-value=57 Score=34.07 Aligned_cols=98 Identities=15% Similarity=0.054 Sum_probs=70.9
Q ss_pred CCCCeEEEEecCCCCCCCceeeeccHhHHHHhhhcccccccccCCCCCCcEEEEecChhhHHHHHHHHHHhhcCcEEEEe
Q 006115 218 QPFNICTIMYTSGTSGDPKGVVLTHETIATFVSGVDLFLDQFEDKMTVDDVYLSFLPLAHILDRVIEEYFFRRGASVGYY 297 (660)
Q Consensus 218 ~~~~~a~i~~TSGTTG~pK~v~~th~~l~~~~~~~~~~~~~~~~~~~~~d~~l~~~p~~~~~g~~~~~~~l~~G~~~v~~ 297 (660)
.++.+|++.. .+ +..+|.+.+...+..+...+... ++.++|++...++-..-+ ....+.++..|+..+.+
T Consensus 15 ~p~~~a~~~~---~~----~~~~Ty~el~~~~~~~A~~L~~~--Gv~~gd~V~i~~~~~~~~-~~~~lA~~~~G~~~vpl 84 (504)
T 1t5h_X 15 APDHCALAVP---AR----GLRLTHAELRARVEAVAARLHAD--GLRPQQRVAVVAPNSADV-VIAILALHRLGAVPALL 84 (504)
T ss_dssp CTTSEEEEET---TT----TEEEEHHHHHHHHHHHHHHHHHT--TCCTTCEEEEECCSCHHH-HHHHHHHHHHTCEEEEE
T ss_pred CCCceEEEEc---CC----CceeEHHHHHHHHHHHHHHHHHc--CCCCCCEEEEEcCCCHHH-HHHHHHHHHhCcEEEec
Confidence 3566776642 11 25689999988888877776543 788999999998876322 33456678899998888
Q ss_pred cC--ChHHHHHHhhhhcCeEEEe--chHHHHH
Q 006115 298 HG--DLNALRDDLMELKPTLLAG--VPRVFEK 325 (660)
Q Consensus 298 ~~--~~~~~~~~i~~~~~t~l~~--~p~~~~~ 325 (660)
+. ....+...+++.+++.++. .+.....
T Consensus 85 ~~~~~~~~l~~~l~~~~~~~~i~~~~~~~~~~ 116 (504)
T 1t5h_X 85 NPRLKSAELAELIKRGEMTAAVIAVGRQVADA 116 (504)
T ss_dssp CTTSCHHHHHHHHHHTTCSEEEECC--CHHHH
T ss_pred CCccChHHHHHHHhhcCCcEEEEecchhhhhh
Confidence 76 7889999999999999998 6554433
No 65
>1pg4_A Acetyl-COA synthetase; AMP-forming, adenylate-forming, thioester-forming, ligase; HET: COA PRX; 1.75A {Salmonella enterica} SCOP: e.23.1.1 PDB: 1pg3_A* 2p2f_A* 2p2b_A* 2p2q_A* 2p2j_A* 2p20_A* 2p2m_A*
Probab=54.65 E-value=50 Score=35.95 Aligned_cols=122 Identities=9% Similarity=0.012 Sum_probs=81.9
Q ss_pred CCCCceee-eccccCCCCCce--EEeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEeCChhhHH--HHHHHHHhCCCeEee
Q 006115 56 PGNRMLGW-RPFVDGKFGPYV--WKTYKEVYEEVLQIVSALRASGAEPGCRVGIYGANCPQWV--EAMEACNALSLICVP 130 (660)
Q Consensus 56 pd~~a~~~-~~~~~~~~~~~~--~~Ty~el~~~~~~lA~~L~~~gv~~gd~V~l~~~n~~~~~--~~~lA~~~~G~~~v~ 130 (660)
++.++++. . .|.+|..+ .+|.+.+...+.... -...+++++|++....+-+..+- ..+++.+..|+..+.
T Consensus 255 ~~d~a~ilyT---SGTTG~PKgV~~sh~~~~~~~~~~~--~~~~~~~~~d~~l~~~~~~~~~g~~~~~~~~L~~G~t~vl 329 (652)
T 1pg4_A 255 AEDPLFILYT---SGSTGKPKGVLHTTGGYLVYAATTF--KYVFDYHPGDIYWCTADVGWVTGHSYLLYGPLACGATTLM 329 (652)
T ss_dssp TTSEEEEEEE---CCSSSSCEEEEEESHHHHHHHHHHH--HHHTTCCTTCEEEECSCTTSHHHHHHTTHHHHHTTCEEEE
T ss_pred CCCCEEEEec---cCCCCCCceEEECchHHHHHHHHHH--HHhcCCCCCCEEEEccCCeeeechHHHHHHHHHcCceEEE
Confidence 45555543 4 56666654 567776654332211 12358899999888877765443 346889999999888
Q ss_pred cCCC---CChhhHHHHhhcccceEEEEccchhhhhhcccc-----ccccCccEEEEecCC
Q 006115 131 LYDT---LGPGAVNFILDHAEIDFVFVQDKKVKELLSPDC-----RSAQRLRVMVCFTSL 182 (660)
Q Consensus 131 i~~~---~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~~-----~~~~~~~~i~~~~~~ 182 (660)
.+.. .+++.+..++++.++.++.+....+..+..... ..++.++.++.....
T Consensus 330 ~~~~~~~~~~~~~~~~i~~~~vt~~~~~P~~~~~l~~~~~~~~~~~~l~sLr~i~~gGe~ 389 (652)
T 1pg4_A 330 FEGVPNWPTPARMCQVVDKHQVNILYTAPTAIRALMAEGDKAIEGTDRSSLRILGSVGEP 389 (652)
T ss_dssp ECSCTTSSSTTHHHHHHHHHTCSEEEECHHHHHHHHTTGGGGTTTCCCTTCCEEEEESSC
T ss_pred ECCCCCCCCHHHHHHHHHHhCCeEEEeCHHHHHHHHhcCccccccCCcCceEEEEEecCC
Confidence 7642 467889999999999999999988776655332 234567777666543
No 66
>1amu_A GRSA, gramicidin synthetase 1; peptide synthetase, adenylate forming; HET: PHE AMP; 1.90A {Brevibacillus brevis} SCOP: e.23.1.1
Probab=53.73 E-value=60 Score=34.53 Aligned_cols=95 Identities=8% Similarity=-0.025 Sum_probs=71.2
Q ss_pred CCCCeEEEEecCCCCCCCceeeeccHhHHHHhhhcccccccccCCCCCCcEEEEecChhhHHHHHHHHHHhhcCcEEEEe
Q 006115 218 QPFNICTIMYTSGTSGDPKGVVLTHETIATFVSGVDLFLDQFEDKMTVDDVYLSFLPLAHILDRVIEEYFFRRGASVGYY 297 (660)
Q Consensus 218 ~~~~~a~i~~TSGTTG~pK~v~~th~~l~~~~~~~~~~~~~~~~~~~~~d~~l~~~p~~~~~g~~~~~~~l~~G~~~v~~ 297 (660)
.++.+|++.. .-.+|.+.+...+..+...+... ++.++|++...++...- .....+.++..|+..+.+
T Consensus 52 ~p~~~Al~~~---------~~~~Ty~eL~~~~~~lA~~L~~~--Gv~~gd~V~i~~~n~~e-~~~~~lA~~~~Gav~vpl 119 (563)
T 1amu_A 52 RPNNVAIVCE---------NEQLTYHELNVKANQLARIFIEK--GIGKDTLVGIMMEKSID-LFIGILAVLKAGGAYVPI 119 (563)
T ss_dssp CTTSEEEEET---------TEEEEHHHHHHHHHHHHHHHHHT--TCCTTCEEEEECCSSHH-HHHHHHHHHHTTCEEEEC
T ss_pred CCCCeEEEeC---------CceecHHHHHHHHHHHHHHHHHc--CCCCCCEEEEEeCCCHH-HHHHHHHHHHhCCEEEEe
Confidence 4566776531 23689998888887777666443 78899999999887632 233456678899998888
Q ss_pred cC--ChHHHHHHhhhhcCeEEEechHHHH
Q 006115 298 HG--DLNALRDDLMELKPTLLAGVPRVFE 324 (660)
Q Consensus 298 ~~--~~~~~~~~i~~~~~t~l~~~p~~~~ 324 (660)
+. ....+...++..++..++..+....
T Consensus 120 ~~~~~~~~l~~il~~~~~~~li~~~~~~~ 148 (563)
T 1amu_A 120 DIEYPKERIQYILDDSQARMLLTQKHLVH 148 (563)
T ss_dssp CTTSCHHHHHHHHHHHTCSEEEECGGGHH
T ss_pred CCCCcHHHHHHHHHhcCCCEEEEcCchhh
Confidence 76 7889999999999999999876543
No 67
>3tbh_A O-acetyl serine sulfhydrylase; cysteine synthase, type II PLP dependent enzyme, serine ACET transferase; HET: LLP; 1.68A {Leishmania donovani} PDB: 3spx_A* 3t4p_A* 4air_A*
Probab=53.14 E-value=45 Score=32.78 Aligned_cols=66 Identities=8% Similarity=-0.020 Sum_probs=47.6
Q ss_pred HHHHcC-CCCCCEEEEEeCChhhHHHHHHHHHhCCCeEeecCCCCChhhHHHHhhcccceEEEEccc
Q 006115 92 ALRASG-AEPGCRVGIYGANCPQWVEAMEACNALSLICVPLYDTLGPGAVNFILDHAEIDFVFVQDK 157 (660)
Q Consensus 92 ~L~~~g-v~~gd~V~l~~~n~~~~~~~~lA~~~~G~~~v~i~~~~~~~~l~~~l~~~~~~~vi~~~~ 157 (660)
.+.+.| +++|+.|.+....+=.-..+.++|...|..++.+-|...+..-...++..++++++++..
T Consensus 61 ~a~~~g~l~~g~~vvv~aSsGN~g~alA~aa~~~G~~~~iv~p~~~~~~k~~~~~~~GA~V~~~~~~ 127 (334)
T 3tbh_A 61 KAEKEGKLIPGKSIVVESSSGNTGVSLAHLGAIRGYKVIITMPESMSLERRCLLRIFGAEVILTPAA 127 (334)
T ss_dssp HHHHTTSCCTTTCEEEEECSSHHHHHHHHHHHHHTCEEEEEEETTSCHHHHHHHHHTTCEEEEECGG
T ss_pred HHHHcCCCCCCCeEEEEeCCCHHHHHHHHHHHHhCCCEEEEECCCCCHHHHHHHHHCCCEEEEECCC
Confidence 344555 488988655555566667777888888998777666555555567789999999999764
No 68
>3t5a_A Long-chain-fatty-acid--AMP ligase FADD28; acetyl-COA synthetase like fold, AMP-binding; 2.05A {Mycobacterium tuberculosis} PDB: 3e53_A
Probab=52.73 E-value=83 Score=32.38 Aligned_cols=106 Identities=12% Similarity=-0.005 Sum_probs=76.4
Q ss_pred CCCCeEEEEecCCCCCCCceeeeccHhHHHHhhhcccccccccCCCCCCcEEEEecChhhHHHHHHHHHHhhcCcEEEEe
Q 006115 218 QPFNICTIMYTSGTSGDPKGVVLTHETIATFVSGVDLFLDQFEDKMTVDDVYLSFLPLAHILDRVIEEYFFRRGASVGYY 297 (660)
Q Consensus 218 ~~~~~a~i~~TSGTTG~pK~v~~th~~l~~~~~~~~~~~~~~~~~~~~~d~~l~~~p~~~~~g~~~~~~~l~~G~~~v~~ 297 (660)
.++.+|++.........-....+|.+.+...+..+...+... +. ++|++...++...- -....+.++..|+..+.+
T Consensus 37 ~pd~~Al~~~~~~~~~~g~~~~~Ty~el~~~~~~lA~~L~~~--g~-~gd~V~i~~~n~~e-~~~~~lA~~~~G~v~vpl 112 (480)
T 3t5a_A 37 QPHDPAFTFMDYEQDWDGVAITLTWSQLYRRTLNVAQELSRC--GS-TGDRVVISAPQGLE-YVVAFLGALQAGRIAVPL 112 (480)
T ss_dssp STTSEEEEEEETTTCTTCEEEEEEHHHHHHHHHHHHHHHTTS--SC-TTCEEEEECCSSHH-HHHHHHHHHHTTCEEEEE
T ss_pred CCCCceEEEecccCCCCCceEEEcHHHHHHHHHHHHHHHHhc--CC-CCCEEEEEcCCcHH-HHHHHHHHHHhCcEEEee
Confidence 467788776543211112346799999999998888877554 44 89999988877632 233456678899998877
Q ss_pred cC-----ChHHHHHHhhhhcCeEEEechHHHHHHH
Q 006115 298 HG-----DLNALRDDLMELKPTLLAGVPRVFEKIH 327 (660)
Q Consensus 298 ~~-----~~~~~~~~i~~~~~t~l~~~p~~~~~l~ 327 (660)
+. ....+...++..++..++........+.
T Consensus 113 ~~~~~~~~~~~l~~il~~~~~~~vi~~~~~~~~~~ 147 (480)
T 3t5a_A 113 SVPQGGVTDERSDSVLSDSSPVAILTTSSAVDDVV 147 (480)
T ss_dssp CSCCSCTTCCHHHHHHHHHCCSEEEECTTTHHHHH
T ss_pred CCCCccchHHHHHHHHHhCCCCEEEeChhHHHHHH
Confidence 53 4678999999999999999988766554
No 69
>2v7b_A Benzoate-coenzyme A ligase; benzoate oxidation, benzoate COA ligase; 1.84A {Burkholderia xenovorans}
Probab=52.25 E-value=45 Score=35.13 Aligned_cols=98 Identities=8% Similarity=-0.103 Sum_probs=73.5
Q ss_pred CCCCeEEEEecCCCCCCCceeeeccHhHHHHhhhcccccccccCCCCCCcEEEEecChhhHHHHHHHHHHhhcCcEEEEe
Q 006115 218 QPFNICTIMYTSGTSGDPKGVVLTHETIATFVSGVDLFLDQFEDKMTVDDVYLSFLPLAHILDRVIEEYFFRRGASVGYY 297 (660)
Q Consensus 218 ~~~~~a~i~~TSGTTG~pK~v~~th~~l~~~~~~~~~~~~~~~~~~~~~d~~l~~~p~~~~~g~~~~~~~l~~G~~~v~~ 297 (660)
.++.+|++.. | ..+|...+...+..+...+... ++.++|++...++-..-+ ....+.++..|+..+.+
T Consensus 36 ~p~~~A~~~~--~-------~~~Ty~el~~~~~~lA~~L~~~--Gv~~gd~V~i~~~n~~~~-~~~~lA~~~~G~~~vpl 103 (529)
T 2v7b_A 36 RAGKTAYIDD--T-------GSTTYGELEERARRFASALRTL--GVHPEERILLVMLDTVAL-PVAFLGALYAGVVPVVA 103 (529)
T ss_dssp GTTSEEEECS--S-------CEEEHHHHHHHHHHHHHHHHHT--TCCTTCEEEEECCSSTHH-HHHHHHHHHHTCEEEEC
T ss_pred cCCceEEEeC--C-------CCccHHHHHHHHHHHHHHHHHc--CCCCCCEEEEEcCCcHHH-HHHHHHHHHcCceEEec
Confidence 3566676532 1 3589998888888877766443 788999999998876432 33456678889998888
Q ss_pred cC--ChHHHHHHhhhhcCeEEEechHHHHHHH
Q 006115 298 HG--DLNALRDDLMELKPTLLAGVPRVFEKIH 327 (660)
Q Consensus 298 ~~--~~~~~~~~i~~~~~t~l~~~p~~~~~l~ 327 (660)
+. +...+...+++.++..++..+.....+.
T Consensus 104 ~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~ 135 (529)
T 2v7b_A 104 NTLLTPADYVYMLTHSHARAVIASGALVQNVT 135 (529)
T ss_dssp CTTCCHHHHHHHHHHHTCSEEEEEGGGHHHHH
T ss_pred CcccCHHHHHHHHhccCCeEEEechhhhhHHH
Confidence 76 7899999999999999999887665543
No 70
>4fuq_A Malonyl COA synthetase; ANL superfamily, methylma malonate, ligase; HET: MSE; 1.70A {Rhodopseudomonas palustris} PDB: 4fut_A* 4gxr_A* 4gxq_A*
Probab=51.52 E-value=41 Score=35.18 Aligned_cols=85 Identities=14% Similarity=0.051 Sum_probs=67.2
Q ss_pred eeccHhHHHHhhhcccccccccCCCCCCcEEEEecChhhHHHHHHHHHHhhcCcEEEEecC--ChHHHHHHhhhhcCeEE
Q 006115 239 VLTHETIATFVSGVDLFLDQFEDKMTVDDVYLSFLPLAHILDRVIEEYFFRRGASVGYYHG--DLNALRDDLMELKPTLL 316 (660)
Q Consensus 239 ~~th~~l~~~~~~~~~~~~~~~~~~~~~d~~l~~~p~~~~~g~~~~~~~l~~G~~~v~~~~--~~~~~~~~i~~~~~t~l 316 (660)
.+|.+.+...+..+...+... ++.++|++...++...- .....+.++..|+..+.++. +...+...+++.++.++
T Consensus 28 ~~Ty~eL~~~~~~lA~~L~~~--Gv~~gd~V~i~~~~~~~-~~~~~lA~~~~Ga~~vpl~~~~~~~~l~~il~~~~~~~v 104 (503)
T 4fuq_A 28 KISYAELVARAGRVANVLVAR--GLQVGDRVAAQTEKSVE-ALVLYLATVRAGGVYLPLNTAYTLHELDYFITDAEPKIV 104 (503)
T ss_dssp EEEHHHHHHHHHHHHHHHHHT--TCCTTCEEEEECCSCHH-HHHHHHHHHHTTCEEEECCTTCCHHHHHHHHHHHCCSEE
T ss_pred EEEHHHHHHHHHHHHHHHHHc--CCCCCCEEEEECCCCHH-HHHHHHHHHHcCcEEEecCCCCCHHHHHHHHHhcCCcEE
Confidence 589999988888887776544 78899999999887632 23346677889999888876 88999999999999999
Q ss_pred EechHHHHHH
Q 006115 317 AGVPRVFEKI 326 (660)
Q Consensus 317 ~~~p~~~~~l 326 (660)
+..+.....+
T Consensus 105 i~~~~~~~~~ 114 (503)
T 4fuq_A 105 VCDPSKRDGI 114 (503)
T ss_dssp EECGGGTTTT
T ss_pred EECchhhHHH
Confidence 9988765443
No 71
>1ry2_A Acetyl-coenzyme A synthetase 1, acyl-activating enzyme 1; AMP forming, related to firefly luciferase, ligase; HET: AMP; 2.30A {Saccharomyces cerevisiae} SCOP: e.23.1.1
Probab=50.35 E-value=67 Score=35.01 Aligned_cols=121 Identities=10% Similarity=-0.067 Sum_probs=79.5
Q ss_pred CCCCceee-eccccCCCCCce--EEeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEeCChhhHH--HHHHHHHhCCCeEee
Q 006115 56 PGNRMLGW-RPFVDGKFGPYV--WKTYKEVYEEVLQIVSALRASGAEPGCRVGIYGANCPQWV--EAMEACNALSLICVP 130 (660)
Q Consensus 56 pd~~a~~~-~~~~~~~~~~~~--~~Ty~el~~~~~~lA~~L~~~gv~~gd~V~l~~~n~~~~~--~~~lA~~~~G~~~v~ 130 (660)
++.++++. . .|.+|..+ .+|.+.+...+... .-...++.++|++....+-+...- ..+++.+..|+..+.
T Consensus 261 ~~d~a~ilyT---SGTTG~PKgV~~sh~~~~~~~~~~--~~~~~~~~~~d~~~~~~~~~~~~g~~~~~~~~L~~G~t~v~ 335 (663)
T 1ry2_A 261 SEDPLFLLYT---SGSTGAPKGVQHSTAGYLLGALLT--MRYTFDTHQEDVFFTAGDIGWITGHTYVVYGPLLYGCATLV 335 (663)
T ss_dssp TTSCCEEEEE---CCSSSSCEEEEECSHHHHHHHHHH--HHHHSCCCSSCEEEECSCTTSHHHHHHTTHHHHHHTSEEEE
T ss_pred CCCceEEEec---cCCCCCCceEEEchhHHHHHHHHH--HHHhcCCCCCcEEEEcCCcHHhhhhHHHHHHHHHhCCEEEE
Confidence 45555544 4 56666654 45666654333211 112458899999888777664432 446788999999887
Q ss_pred cCCC---CChhhHHHHhhcccceEEEEccchhhhhhcccc-----ccccCccEEEEecC
Q 006115 131 LYDT---LGPGAVNFILDHAEIDFVFVQDKKVKELLSPDC-----RSAQRLRVMVCFTS 181 (660)
Q Consensus 131 i~~~---~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~~-----~~~~~~~~i~~~~~ 181 (660)
.+.. .+++.+..+|++.++.++.+....+..+..... ..+..++.++....
T Consensus 336 ~~~~~~~~~~~~~~~~i~~~~vt~~~~~Ps~~~~l~~~~~~~~~~~~l~sLr~i~~gGe 394 (663)
T 1ry2_A 336 FEGTPAYPNYSRYWDIIDEHKVTQFYVAPTALRLLKRAGDSYIENHSLKSLRCLGSVGE 394 (663)
T ss_dssp ECSCTTSSCTTHHHHHHHHTTCSEEEECHHHHHHHTTSCTTSSSSCCCTTCCEEEECSS
T ss_pred ECCCCCCCCHHHHHHHHHHcCCCEEEecHHHHHHHHhcCccccccCCcCceEEEEEEcC
Confidence 7642 467889999999999999999988776654332 23456666666554
No 72
>3etc_A AMP-binding protein; adenylate-forming acyl-COA synthetase ligase, ligase; HET: PGE 1PE EPE; 2.10A {Methanosarcina acetivorans}
Probab=49.81 E-value=59 Score=34.77 Aligned_cols=98 Identities=9% Similarity=0.016 Sum_probs=74.2
Q ss_pred CCCCeEEEEecCCCCCCCceeeeccHhHHHHhhhcccccccccCCCCCCcEEEEecChhhHHHHHHHHHHhhcCcEEEEe
Q 006115 218 QPFNICTIMYTSGTSGDPKGVVLTHETIATFVSGVDLFLDQFEDKMTVDDVYLSFLPLAHILDRVIEEYFFRRGASVGYY 297 (660)
Q Consensus 218 ~~~~~a~i~~TSGTTG~pK~v~~th~~l~~~~~~~~~~~~~~~~~~~~~d~~l~~~p~~~~~g~~~~~~~l~~G~~~v~~ 297 (660)
.++.+|++..... | ....+|.+.+...+..+...+... ++.++|++...++...- -....+.++..|+..+.+
T Consensus 69 ~pd~~Al~~~~~~--g--~~~~~Ty~eL~~~~~~~A~~L~~~--Gv~~Gd~V~l~~~~~~e-~~~~~lA~~~~Gav~vpl 141 (580)
T 3etc_A 69 SPEKLAMIWCDDY--G--NEKIFTFKDLKYYSDKAANFFVKH--GIGKGDYVMLTLKSRYD-FWYCMLGLHKLGAIAVPA 141 (580)
T ss_dssp CTTCEEEEEEESS--S--CEEEEEHHHHHHHHHHHHHHHHHT--TCCTTCEEEEECTTCTH-HHHHHHHHHHHTCEEEEC
T ss_pred CCCCEEEEEEcCC--C--CEeEEeHHHHHHHHHHHHHHHHHc--CCCCCCEEEEEcCCCHH-HHHHHHHHHhCCEEEEeC
Confidence 5778888765321 2 246789999888888887776543 78899999999887642 223456678889998887
Q ss_pred cC--ChHHHHHHhhhhcCeEEEechHH
Q 006115 298 HG--DLNALRDDLMELKPTLLAGVPRV 322 (660)
Q Consensus 298 ~~--~~~~~~~~i~~~~~t~l~~~p~~ 322 (660)
+. ....+...+++.++.++++....
T Consensus 142 ~~~~~~~~l~~~l~~~~~~~ii~~~~~ 168 (580)
T 3etc_A 142 THMLKTRDIVYRIEKAGLKMIVCIAED 168 (580)
T ss_dssp CTTCCHHHHHHHHHHHTCCEEEEESST
T ss_pred CccCCHHHHHHHHHhcCCCEEEEecch
Confidence 76 88999999999999999987653
No 73
>3ezx_A MMCP 1, monomethylamine corrinoid protein 1; N terminal all helical bundle C terminal rossmann fold, cobalt, metal-binding; HET: HCB; 2.56A {Methanosarcina barkeri}
Probab=44.52 E-value=1.2e+02 Score=27.59 Aligned_cols=90 Identities=11% Similarity=0.050 Sum_probs=0.0
Q ss_pred CCCcEEEEecChh-hHHHHHH-HHHHhhcCcEEEEecC--ChHHHHHHhhhhcCeEEEe------chHH--HHHHHHHHH
Q 006115 264 TVDDVYLSFLPLA-HILDRVI-EEYFFRRGASVGYYHG--DLNALRDDLMELKPTLLAG------VPRV--FEKIHEGIK 331 (660)
Q Consensus 264 ~~~d~~l~~~p~~-~~~g~~~-~~~~l~~G~~~v~~~~--~~~~~~~~i~~~~~t~l~~------~p~~--~~~l~~~~~ 331 (660)
..+.+++.+.+-. |..|..+ ....-..|..++.... +++.+.+.+.+++++.+.. ++++ +..+.+.++
T Consensus 91 ~~~~vll~~v~gd~HdiG~~iv~~~l~~~G~~Vi~LG~~vp~e~iv~~~~~~~~d~v~l~~S~l~~~~~~~~~~~i~~l~ 170 (215)
T 3ezx_A 91 EAGLAITFVAEGDIHDIGHRLVTTMLGANGFQIVDLGVDVLNENVVEEAAKHKGEKVLLVGSALMTTSMLGQKDLMDRLN 170 (215)
T ss_dssp -CCEEEEEECTTCCCCHHHHHHHHHHHHTSCEEEECCSSCCHHHHHHHHHHTTTSCEEEEEECSSHHHHTHHHHHHHHHH
T ss_pred CCCeEEEEeCCCChhHHHHHHHHHHHHHCCCeEEEcCCCCCHHHHHHHHHHcCCCEEEEEchhcccCcHHHHHHHHHHHH
Q ss_pred HHHHhhchHHHHHHHHHHHHHHHHHhcCCCCCCcchhHHHHHHHHHHHHhCCcE---eEEEEccCCCCHHHHHHH
Q 006115 332 KALEELRPLRRRIFDALYKYKLAWMNMGYKQREASPLADLLAFRKVKARLGGRL---RLVISGGAPLSTEVEEFL 403 (660)
Q Consensus 332 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sl---r~v~~~G~~l~~~~~~~~ 403 (660)
+. .+ -.+++||.+++++..+.+
T Consensus 171 ~~--------------------------------------------------~~~~~v~v~vGG~~~~~~~a~~i 195 (215)
T 3ezx_A 171 EE--------------------------------------------------KLRDSVKCMFGGAPVSDKWIEEI 195 (215)
T ss_dssp HT--------------------------------------------------TCGGGSEEEEESSSCCHHHHHHH
T ss_pred Hc--------------------------------------------------CCCCCCEEEEECCCCCHHHHHHh
No 74
>3nyq_A Malonyl-COA ligase; A/B topology ababa sandwich beta-barrel adenylate-forming EN fold; HET: MCA AMP; 1.43A {Streptomyces coelicolor} PDB: 3nyr_A*
Probab=43.41 E-value=1.1e+02 Score=31.82 Aligned_cols=102 Identities=10% Similarity=-0.091 Sum_probs=71.1
Q ss_pred CCCCCceee-eccccCCCCCce--EEeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEeCChhhH--HHHHHHHHhCCCeEe
Q 006115 55 YPGNRMLGW-RPFVDGKFGPYV--WKTYKEVYEEVLQIVSALRASGAEPGCRVGIYGANCPQW--VEAMEACNALSLICV 129 (660)
Q Consensus 55 ~pd~~a~~~-~~~~~~~~~~~~--~~Ty~el~~~~~~lA~~L~~~gv~~gd~V~l~~~n~~~~--~~~~lA~~~~G~~~v 129 (660)
.|+.+|++. . .|.+|..+ .+|...+...+..+...+ ++.++|++...++-...+ +..+++.+..|+.++
T Consensus 153 ~~~d~a~i~~T---SGTTG~PKgV~~sh~~l~~~~~~~~~~~---~~~~~d~~l~~~p~~~~~g~~~~~~~~l~~G~~~~ 226 (505)
T 3nyq_A 153 DDGDPALVVYT---SGTTGPPKGAVIPRRALATTLDALADAW---QWTGEDVLVQGLPLFHVHGLVLGILGPLRRGGSVR 226 (505)
T ss_dssp CTTSEEEEEEE---CCSSSSCEEEEEEHHHHHHHHHHHHHHH---TCCTTCEEEECCCTTSHHHHTTTTHHHHHHTCEEE
T ss_pred CCCCeEEEEeC---CCCcCCCCeEEEeHHHHHHHHHHHHHHh---CCCCCcEEEEeccHHHHHHHHHHHHHHHhcCCEEE
Confidence 355666544 4 56666544 688998887777665544 788899888877754332 335788889999987
Q ss_pred ecCCCCChhhHHHHhhcccceEEEEccchhhhhhc
Q 006115 130 PLYDTLGPGAVNFILDHAEIDFVFVQDKKVKELLS 164 (660)
Q Consensus 130 ~i~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~ 164 (660)
... ..+++.+...+ +.++.+++........+..
T Consensus 227 ~~~-~~~~~~~~~~i-~~~~t~~~~~P~~~~~l~~ 259 (505)
T 3nyq_A 227 HLG-RFSTEGAAREL-NDGATMLFGVPTMYHRIAE 259 (505)
T ss_dssp ECS-SCCHHHHHHHH-TTTCCEEEECHHHHHHHHH
T ss_pred ECC-CCChHHHHHHH-hhCCeEEEehHHHHHHHHH
Confidence 764 45667777777 6789999988877665543
No 75
>3tsy_A Fusion protein 4-coumarate--COA ligase 1, resvera synthase; transferase; 3.10A {Arabidospis thaliana}
Probab=42.35 E-value=72 Score=36.67 Aligned_cols=99 Identities=16% Similarity=0.116 Sum_probs=74.9
Q ss_pred CCCCeEEEEecCCCCCCCceeeeccHhHHHHhhhcccccccccCCCCCCcEEEEecChhhHHHHHHHHHHhhcCcEEEEe
Q 006115 218 QPFNICTIMYTSGTSGDPKGVVLTHETIATFVSGVDLFLDQFEDKMTVDDVYLSFLPLAHILDRVIEEYFFRRGASVGYY 297 (660)
Q Consensus 218 ~~~~~a~i~~TSGTTG~pK~v~~th~~l~~~~~~~~~~~~~~~~~~~~~d~~l~~~p~~~~~g~~~~~~~l~~G~~~v~~ 297 (660)
.++.+|++.. .+| -.+|.+.+...+..+...+... ++.++|++...++-.. --....+.++..|+..+.+
T Consensus 74 ~pd~~Al~~~---~~~----~~~TY~eL~~~~~~lA~~L~~~--Gv~~gd~V~i~~~ns~-e~~v~~lA~~~~Ga~~vpl 143 (979)
T 3tsy_A 74 FATKPCLING---PTG----HVYTYSDVHVISRQIAANFHKL--GVNQNDVVMLLLPNCP-EFVLSFLAASFRGATATAA 143 (979)
T ss_dssp TTTSEEEEET---TTC----CEEEHHHHHHHHHHHHHHHHHT--TCCTTCEEEEECSSCH-HHHHHHHHHHHHTCEEEEE
T ss_pred CCCCeEEEEC---CCC----cEEEHHHHHHHHHHHHHHHHHc--CCCCcCEEEEEeCCCH-HHHHHHHHHHHcCCEEEee
Confidence 4677777642 222 4688998888888877776543 7889999999988763 2233456778899999888
Q ss_pred cC--ChHHHHHHhhhhcCeEEEechHHHHHH
Q 006115 298 HG--DLNALRDDLMELKPTLLAGVPRVFEKI 326 (660)
Q Consensus 298 ~~--~~~~~~~~i~~~~~t~l~~~p~~~~~l 326 (660)
+. ++..+...+++.++.+++..+.....+
T Consensus 144 ~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~ 174 (979)
T 3tsy_A 144 NPFFTPAEIAKQAKASNTKLIITEARYVDKI 174 (979)
T ss_dssp CTTSCHHHHHHHHHHHTEEEEEECSTTTTTS
T ss_pred CCCCCHHHHHHHHHHcCCeEEEEChHHHHHH
Confidence 76 889999999999999999987765444
No 76
>3vc3_A Beta-cyanoalnine synthase; beta-cyanoalanine synthase, transferase; HET: C6P; 1.77A {Glycine max} PDB: 3vbe_A*
Probab=42.32 E-value=79 Score=31.16 Aligned_cols=69 Identities=9% Similarity=-0.034 Sum_probs=51.3
Q ss_pred HHHHHHHcCCCCCCEEEEEeCChhhHHHHHHHHHhCCCeEeecCCCCChhhHHHHhhcccceEEEEccc
Q 006115 89 IVSALRASGAEPGCRVGIYGANCPQWVEAMEACNALSLICVPLYDTLGPGAVNFILDHAEIDFVFVQDK 157 (660)
Q Consensus 89 lA~~L~~~gv~~gd~V~l~~~n~~~~~~~~lA~~~~G~~~v~i~~~~~~~~l~~~l~~~~~~~vi~~~~ 157 (660)
+.....+--+++|.+.++....+=.-..+.++|.++|..+..+-|...+..-...++..++++++++..
T Consensus 74 i~~a~~~g~l~~g~~~Vv~aSsGN~g~alA~~aa~~G~~~~IvmP~~~~~~k~~~~~~~GA~Vv~v~~~ 142 (344)
T 3vc3_A 74 ITDAEEKNLITPGKTTLIEPTSGNMGISMAFMAAMKGYKMVLTMPSYTSLERRVTMRAFGAELILTDPA 142 (344)
T ss_dssp HHHHHHTTCCCTTTCEEEEECSSHHHHHHHHHHHHHTCEEEEEEETTSCHHHHHHHHHTTCEEEEECGG
T ss_pred HHHHHHcCCCCCCCCEEEEeCCcHHHHHHHHHHHHcCCcEEEEECCCChHHHHHHHHHcCCEEEEECCC
Confidence 333333334678876666777777777888999999998887777666666677899999999998754
No 77
>3ite_A SIDN siderophore synthetase; ligase, non-ribosomal peptide synthesis, NRPS, sidna3, fungal, endophyte; HET: MSE; 2.00A {Neotyphodium lolii}
Probab=39.96 E-value=1.2e+02 Score=31.90 Aligned_cols=113 Identities=6% Similarity=-0.167 Sum_probs=76.0
Q ss_pred cCCCCCce--EEeHHHHHHHHHHHHHHHH-----HcCCCCCCEEEEEeCChhhHH-HHHHHHHhCCCeEeecCCCCChhh
Q 006115 68 DGKFGPYV--WKTYKEVYEEVLQIVSALR-----ASGAEPGCRVGIYGANCPQWV-EAMEACNALSLICVPLYDTLGPGA 139 (660)
Q Consensus 68 ~~~~~~~~--~~Ty~el~~~~~~lA~~L~-----~~gv~~gd~V~l~~~n~~~~~-~~~lA~~~~G~~~v~i~~~~~~~~ 139 (660)
.|.+|..+ .+|...+...+..++..+. ...+..++++....+.+.++. ..++..+..|+..+........+.
T Consensus 184 SGTTG~PKgV~~th~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~g~~~~~~~~~~~~~~ 263 (562)
T 3ite_A 184 SGSTGTPKGVRVSRHNLSSFSDAWGKLIGNVAPKSLELGGVGKFLCLASRAFDVHIGEMFLAWRFGLCAVTGERLSMLDD 263 (562)
T ss_dssp CC---CCEEEEEEHHHHHHHHHHHHHHHHHHCGGGGGCTTTCEEECCSCTTSTHHHHHHHHHHHTTCEEEECCHHHHHHS
T ss_pred CCCCCCCcEEEECchhHHHHHHHHHhhhccccchhcccCcCceEEEecCchhhhhHHHHHHHHhcccEEEecchhhCHHH
Confidence 56666544 6899999888887777654 235777888887777665543 346778888988876654444567
Q ss_pred HHHHhhcccceEEEEccchhhhhhccccccccCccEEEEecC
Q 006115 140 VNFILDHAEIDFVFVQDKKVKELLSPDCRSAQRLRVMVCFTS 181 (660)
Q Consensus 140 l~~~l~~~~~~~vi~~~~~~~~~~~~~~~~~~~~~~i~~~~~ 181 (660)
+...+++.++.++......+..... ....+..++.++.-..
T Consensus 264 ~~~~i~~~~~t~~~~~P~~l~~~~~-~~~~~~~lr~~~~gG~ 304 (562)
T 3ite_A 264 LPRTFRELGVTHAGIVPSLLDQTGL-VPEDAPHLVYLGVGGE 304 (562)
T ss_dssp HHHHHHHTTCCEEEECHHHHHHHTC-CGGGSTTCCEEEEESS
T ss_pred HHHHHHHcCCCEEEcCHHHHhhccc-CccccCceEEEEEecC
Confidence 7788999999999998876654422 2334566666665544
No 78
>2vsq_A Surfactin synthetase subunit 3; ligase, peptidyl carrier protein, ligase phosphoprotein, TER module, phosphopantetheine; 2.60A {Bacillus subtilis}
Probab=36.40 E-value=68 Score=38.28 Aligned_cols=121 Identities=9% Similarity=-0.036 Sum_probs=84.2
Q ss_pred CCCCCceee-eccccCCCCCce--EEeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEeCChhhHHH-HHHHHHhCCCeEee
Q 006115 55 YPGNRMLGW-RPFVDGKFGPYV--WKTYKEVYEEVLQIVSALRASGAEPGCRVGIYGANCPQWVE-AMEACNALSLICVP 130 (660)
Q Consensus 55 ~pd~~a~~~-~~~~~~~~~~~~--~~Ty~el~~~~~~lA~~L~~~gv~~gd~V~l~~~n~~~~~~-~~lA~~~~G~~~v~ 130 (660)
.|+.+|++. . .|.+|..+ .+|.+.+... .......++.++|++..+.+-+.+..+ -+++.+..|+.++.
T Consensus 605 ~~~~~ayiiyT---SGSTG~PKgV~~~h~~l~~~----~~~~~~~~~~~~d~~l~~~~~~fd~~~~~~~~~l~~G~~l~~ 677 (1304)
T 2vsq_A 605 DPNDPAYIMYT---SGTTGKPKGNITTHANIQGL----VKHVDYMAFSDQDTFLSVSNYAFDAFTFDFYASMLNAARLII 677 (1304)
T ss_dssp CTTSEEEEEEE---CCSSSSCEEEEEEHHHHHHH----HSSCCSSCCCTTCEEEECSCTTSTHHHHHHHHHHTTTCEEEE
T ss_pred CCCCeEEEEeC---CCCCCCCCEEEEehHHHHHH----HHHHHhcCCCCCCEEEEECCccHHHHHHHHHHHHHcCCEEEE
Confidence 466666544 4 56666654 6788777532 112223488999999888887766543 47888899999888
Q ss_pred cCC--CCChhhHHHHhhcccceEEEEccchhhhhhccccccccCccEEEEecCC
Q 006115 131 LYD--TLGPGAVNFILDHAEIDFVFVQDKKVKELLSPDCRSAQRLRVMVCFTSL 182 (660)
Q Consensus 131 i~~--~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~~~~~~~~~~i~~~~~~ 182 (660)
.++ ..++..+...+.+.++.++.........+..........++.++.-.+.
T Consensus 678 ~~~~~~~~~~~l~~~i~~~~vt~~~~~p~~~~~l~~~~~~~~~~lr~~~~gGe~ 731 (1304)
T 2vsq_A 678 ADEHTLLDTERLTDLILQENVNVMFATTALFNLLTDAGEDWMKGLRCILFGGER 731 (1304)
T ss_dssp CCGGGTTCHHHHHHHHHHHTCCEEEEEHHHHHHHHHHCSHHHHTCSEEEEESSC
T ss_pred CChhhcCCHHHHHHHHHHcCCcEEEccHHHHHHHHhhchhcCCCccEEEEecCC
Confidence 765 3577899999999999999998887776654333334567777766543
No 79
>3l8c_A D-alanine--poly(phosphoribitol) ligase subunit 1; structural genomics, DLTA, ATP-binding, cytoplasm, nucleotide-binding; 2.41A {Streptococcus pyogenes serotype M6} PDB: 3lgx_A*
Probab=34.60 E-value=1.1e+02 Score=31.94 Aligned_cols=81 Identities=11% Similarity=0.015 Sum_probs=62.1
Q ss_pred eeeccHhHHHHhhhcccccccccCCCCCCcEEEEecChhhHHHHHHHHHHhhcCcEEEEecC--ChHHHHHHhhhhcCeE
Q 006115 238 VVLTHETIATFVSGVDLFLDQFEDKMTVDDVYLSFLPLAHILDRVIEEYFFRRGASVGYYHG--DLNALRDDLMELKPTL 315 (660)
Q Consensus 238 v~~th~~l~~~~~~~~~~~~~~~~~~~~~d~~l~~~p~~~~~g~~~~~~~l~~G~~~v~~~~--~~~~~~~~i~~~~~t~ 315 (660)
-.+|...+...+..+...+... ++.++|++...++... --+...+.++..|+..+.++. ....+...++..+++.
T Consensus 28 ~~~Ty~el~~~~~~lA~~L~~~--g~~~gd~V~i~~~n~~-~~~~~~lA~~~~G~v~vpl~~~~~~~~l~~il~~~~~~~ 104 (521)
T 3l8c_A 28 ERRTYGQLKRDSDSIAAFIDSL--ALLAKSPVLVFGAQTY-DMLATFVALTKSGHAYIPVDVHSAPERILAIIEIAKPSL 104 (521)
T ss_dssp EEEEHHHHHHHHHHHHHHHHHT--CCCTTCCEEEEECSSH-HHHHHHHHHHHTTCCEEEEETTSCHHHHHHHHHHSCCSE
T ss_pred CeecHHHHHHHHHHHHHHHHHc--CCCCCCEEEEEeCCCH-HHHHHHHHHHHhCCEEEecCccccHHHHHHHHHhCCCCE
Confidence 3578998888888877766543 6788999988887653 223345667888998888776 8899999999999999
Q ss_pred EEechH
Q 006115 316 LAGVPR 321 (660)
Q Consensus 316 l~~~p~ 321 (660)
++....
T Consensus 105 ii~~~~ 110 (521)
T 3l8c_A 105 IIAIEE 110 (521)
T ss_dssp EEESSC
T ss_pred EEecCc
Confidence 987654
No 80
>4eez_A Alcohol dehydrogenase 1; site-saturation mutagenesis, directed evolution, isobutyraldehyde, biofuel, oxidoreductase; HET: PG4; 1.90A {Lactococcus lactis subsp} PDB: 4eex_A*
Probab=31.59 E-value=1.8e+02 Score=28.22 Aligned_cols=76 Identities=17% Similarity=0.082 Sum_probs=51.8
Q ss_pred EeHHHHHHHHHHHH---HHHHHcCCCCCCEEEEEeCChhhHHHHHHHHHhCCCeEeecCCCCChhhHHHHhhcccceEEE
Q 006115 77 KTYKEVYEEVLQIV---SALRASGAEPGCRVGIYGANCPQWVEAMEACNALSLICVPLYDTLGPGAVNFILDHAEIDFVF 153 (660)
Q Consensus 77 ~Ty~el~~~~~~lA---~~L~~~gv~~gd~V~l~~~n~~~~~~~~lA~~~~G~~~v~i~~~~~~~~l~~~l~~~~~~~vi 153 (660)
+++.+......... ..|...++++||+|+|+.--+.-...+++|....|+.++.++.. ++. ..+++..++..++
T Consensus 137 ~~~~~aa~l~~~~~ta~~~l~~~~~~~g~~VlV~GaG~~g~~a~~~a~~~~g~~Vi~~~~~--~~r-~~~~~~~Ga~~~i 213 (348)
T 4eez_A 137 LDPIEASSITCAGVTTYKAIKVSGVKPGDWQVIFGAGGLGNLAIQYAKNVFGAKVIAVDIN--QDK-LNLAKKIGADVTI 213 (348)
T ss_dssp SCHHHHHHHHHHHHHHHHHHHHHTCCTTCEEEEECCSHHHHHHHHHHHHTSCCEEEEEESC--HHH-HHHHHHTTCSEEE
T ss_pred CCHHHHhhcccceeeEEeeecccCCCCCCEEEEEcCCCccHHHHHHHHHhCCCEEEEEECc--HHH-hhhhhhcCCeEEE
Confidence 66666544333322 23445689999999999887777777888877778877766554 333 3466778888776
Q ss_pred Ec
Q 006115 154 VQ 155 (660)
Q Consensus 154 ~~ 155 (660)
-.
T Consensus 214 ~~ 215 (348)
T 4eez_A 214 NS 215 (348)
T ss_dssp EC
T ss_pred eC
Confidence 53
No 81
>4aec_A Cysteine synthase, mitochondrial; lyase, cysteine synthesis, assimilatory sulfate reduction, S plant inorganic sulfur uptake; HET: PLP; 2.40A {Arabidopsis thaliana}
Probab=30.30 E-value=1.7e+02 Score=29.87 Aligned_cols=63 Identities=10% Similarity=0.018 Sum_probs=46.1
Q ss_pred HHcC-CCCCCEEEEEeCChhhHHHHHHHHHhCCCeEeecCCCCChhhHHHHhhcccceEEEEcc
Q 006115 94 RASG-AEPGCRVGIYGANCPQWVEAMEACNALSLICVPLYDTLGPGAVNFILDHAEIDFVFVQD 156 (660)
Q Consensus 94 ~~~g-v~~gd~V~l~~~n~~~~~~~~lA~~~~G~~~v~i~~~~~~~~l~~~l~~~~~~~vi~~~ 156 (660)
.+.| +++|...++....+=.-..+.++|.+.|..++.+-|...+..-...++..++++++++.
T Consensus 166 ~~~G~l~~g~~~VV~aSsGNhG~AlA~aAa~~Gl~~~IvmP~~~s~~k~~~~r~~GAeVv~v~~ 229 (430)
T 4aec_A 166 EQKGFISPGKSVLVEPTSGNTGIGLAFIAASRGYRLILTMPASMSMERRVLLKAFGAELVLTDP 229 (430)
T ss_dssp HHTTSCCTTTCEEEEECSSHHHHHHHHHHHHHTCEEEEEEETTSCHHHHHHHHHTTCEEEEECG
T ss_pred HHcCCCCCCCcEEEEECCCHHHHHHHHHHHHhCCEEEEEEcCCCCHHHHHHHHHCCCEEEEECC
Confidence 4556 47775555555556666777788889999887776655555666788999999999975
No 82
>1z7w_A Cysteine synthase; transferase; HET: PLP; 2.20A {Arabidopsis thaliana} SCOP: c.79.1.1 PDB: 1z7y_A* 2isq_A*
Probab=29.89 E-value=1.8e+02 Score=28.12 Aligned_cols=64 Identities=16% Similarity=0.060 Sum_probs=43.3
Q ss_pred HHcC-CCCCCEEEEEeCChhhHHHHHHHHHhCCCeEeecCCCCChhhHHHHhhcccceEEEEccc
Q 006115 94 RASG-AEPGCRVGIYGANCPQWVEAMEACNALSLICVPLYDTLGPGAVNFILDHAEIDFVFVQDK 157 (660)
Q Consensus 94 ~~~g-v~~gd~V~l~~~n~~~~~~~~lA~~~~G~~~v~i~~~~~~~~l~~~l~~~~~~~vi~~~~ 157 (660)
.+.| +++|...++....+=.-..+.++|.+.|..++.+-|...+..-...++..++++++++..
T Consensus 58 ~~~G~~~~~~~~vv~assGN~g~alA~aa~~~G~~~~iv~p~~~~~~k~~~~~~~GA~V~~~~~~ 122 (322)
T 1z7w_A 58 EKKGLIKPGESVLIEPTSGNTGVGLAFTAAAKGYKLIITMPASMSTERRIILLAFGVELVLTDPA 122 (322)
T ss_dssp HHTTSCCTTTCEEEEECSSHHHHHHHHHHHHHTCEEEEEEETTSCHHHHHHHHHTTCEEEEECGG
T ss_pred HHcCCCCCCCCEEEEeCCCHHHHHHHHHHHHcCCCEEEEeCCCCCHHHHHHHHHcCCEEEEeCCC
Confidence 4555 466753444455555566667778899998777655544455566888999999998764
No 83
>3ist_A Glutamate racemase; structural genomics, cell WALL biogenesis/degradation, isomerase, peptidoglycan synthesis; HET: MSE; 1.65A {Listeria monocytogenes} PDB: 3hfr_A* 3isv_A*
Probab=29.48 E-value=1.6e+02 Score=27.75 Aligned_cols=61 Identities=15% Similarity=0.163 Sum_probs=47.2
Q ss_pred HHHHHHHhCCCCCceeeeccccCCCCCceEEeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEeCChhhH
Q 006115 47 IFSMSVQKYPGNRMLGWRPFVDGKFGPYVWKTYKEVYEEVLQIVSALRASGAEPGCRVGIYGANCPQW 114 (660)
Q Consensus 47 ~l~~~a~~~pd~~a~~~~~~~~~~~~~~~~~Ty~el~~~~~~lA~~L~~~gv~~gd~V~l~~~n~~~~ 114 (660)
++++..+..|+...+.+. |...-.|...|..++.+.+.+.+..|.+.|++ ..++.=|+...
T Consensus 20 v~~~i~~~lP~~~~iy~~---D~a~~PYG~ks~~~i~~~~~~~~~~L~~~g~~----~IVIACNTa~~ 80 (269)
T 3ist_A 20 VVREVLKQLPHEQVYYLG---DTARCPYGPRDKEEVAKFTWEMTNFLVDRGIK----MLVIACNTATA 80 (269)
T ss_dssp HHHHHHHHCTTCCEEEEE---CGGGCCCTTSCHHHHHHHHHHHHHHHHHTTCS----EEEECCHHHHH
T ss_pred HHHHHHHHCCCCcEEEEe---CCCCCCCCCCCHHHHHHHHHHHHHHHHHCCCC----EEEEeCCCccH
Confidence 455666788999888887 77777778899999999999999999998773 44444455554
No 84
>2q3b_A Cysteine synthase A; pyridoxal-5'-phosphate, sulphur metabolism, cysteine biosynthesis, transferase; HET: LLP; 1.80A {Mycobacterium tuberculosis} PDB: 2q3c_A* 2q3d_A* 3rr2_A
Probab=29.47 E-value=1.9e+02 Score=27.75 Aligned_cols=64 Identities=11% Similarity=0.118 Sum_probs=42.6
Q ss_pred HHHcC-CCCCCEEEEEeCChhhHHHHHHHHHhCCCeEeecCCCCChhhHHHHhhcccceEEEEccc
Q 006115 93 LRASG-AEPGCRVGIYGANCPQWVEAMEACNALSLICVPLYDTLGPGAVNFILDHAEIDFVFVQDK 157 (660)
Q Consensus 93 L~~~g-v~~gd~V~l~~~n~~~~~~~~lA~~~~G~~~v~i~~~~~~~~l~~~l~~~~~~~vi~~~~ 157 (660)
+.+.| +++|+.|+. ...+=.-..+.++|.+.|..++.+-|...+..-...++..++++++++..
T Consensus 58 a~~~g~~~~g~~vv~-assGN~g~alA~~a~~~G~~~~iv~p~~~~~~k~~~~~~~Ga~v~~~~~~ 122 (313)
T 2q3b_A 58 AEQAGLIKPDTIILE-PTSGNTGIALAMVCAARGYRCVLTMPETMSLERRMLLRAYGAELILTPGA 122 (313)
T ss_dssp HHHTTCCCTTCEEEE-ECSSHHHHHHHHHHHHHTCEEEEEEETTSCHHHHHHHHHTTCEEEEECGG
T ss_pred HHHcCCCCCCCEEEE-eCCCHHHHHHHHHHHHcCCcEEEEECCCCCHHHHHHHHHCCCEEEEeCCC
Confidence 34455 467776655 44444555566777799998777655444444556788999999999863
No 85
>2egu_A Cysteine synthase; O-acetylserine sulfhydrase, structural genomics, NPPSFA, NAT project on protein structural and functional analyses; 1.90A {Geobacillus kaustophilus}
Probab=29.21 E-value=2e+02 Score=27.54 Aligned_cols=64 Identities=11% Similarity=0.029 Sum_probs=42.6
Q ss_pred HHHcC-CCCCCEEEEEeCChhhHHHHHHHHHhCCCeEeecCCCCChhhHHHHhhcccceEEEEccc
Q 006115 93 LRASG-AEPGCRVGIYGANCPQWVEAMEACNALSLICVPLYDTLGPGAVNFILDHAEIDFVFVQDK 157 (660)
Q Consensus 93 L~~~g-v~~gd~V~l~~~n~~~~~~~~lA~~~~G~~~v~i~~~~~~~~l~~~l~~~~~~~vi~~~~ 157 (660)
+.+.| +++|+.|+. ...+=.-..+.++|...|..++.+-|...+..-...++..++++++++..
T Consensus 56 a~~~g~~~~g~~vv~-assGN~g~a~A~~a~~~G~~~~iv~p~~~~~~k~~~~~~~GA~v~~~~~~ 120 (308)
T 2egu_A 56 AEKAGKLKPGDTIVE-PTSGNTGIGLAMVAAAKGYKAVLVMPDTMSLERRNLLRAYGAELVLTPGA 120 (308)
T ss_dssp HHHTTCCCTTCEEEE-ECCHHHHHHHHHHHHHHTCEEEEEEESCSCHHHHHHHHHTTCEEEEECGG
T ss_pred HHHcCCCCCCCEEEE-eCCCHHHHHHHHHHHHcCCCEEEEECCCCCHHHHHHHHHcCCEEEEECCC
Confidence 34445 467766554 45555555667777889998776655443444556778999999999864
No 86
>3gqw_A Fatty acid AMP ligase; FAAL, E. coli, ATP-dependent binding enzyme family,, structural genomics, PSI-2, protein structure initiative; HET: ZZ9; 3.00A {Escherichia coli O6} PDB: 3pbk_A*
Probab=28.35 E-value=1.8e+02 Score=30.60 Aligned_cols=86 Identities=9% Similarity=-0.127 Sum_probs=66.6
Q ss_pred eeeccHhHHHHhhhcccccccccCCCCCCcEEEEecChhhHHHHHHHHHHhhcCcEEEEecC--C-------hHHHHHHh
Q 006115 238 VVLTHETIATFVSGVDLFLDQFEDKMTVDDVYLSFLPLAHILDRVIEEYFFRRGASVGYYHG--D-------LNALRDDL 308 (660)
Q Consensus 238 v~~th~~l~~~~~~~~~~~~~~~~~~~~~d~~l~~~p~~~~~g~~~~~~~l~~G~~~v~~~~--~-------~~~~~~~i 308 (660)
-.+|.+.+...+..+...+... ++.++|++...++...- -....+.++..|+..+.++. . ...+...+
T Consensus 48 ~~~Ty~eL~~~~~~lA~~L~~~--Gv~~gd~V~i~~~~~~~-~~~~~lA~~~~G~~~vpl~~~~~~~~~~~~~~~l~~~l 124 (576)
T 3gqw_A 48 DQLEYQTLKARAEAGAKRLLSL--NLKKGDRVALIAETSSE-FVEAFFACQYAGLVAVPLAIPMGVGQRDSWSAKLQGLL 124 (576)
T ss_dssp EEEEHHHHHHHHHHHHHHHHHT--CCCTTCEEEEECCSSHH-HHHHHHHHHHTTCEEEEECCCSSSSSHHHHHHHHHHHH
T ss_pred eEEcHHHHHHHHHHHHHHHHHc--CCCCCCEEEEEcCCcHH-HHHHHHHHHHhCCeEeecCCCCcccchhhHHHHHHHHH
Confidence 5789999988888887776543 78899999999887642 23345677889999888764 2 57888899
Q ss_pred hhhcCeEEEechHHHHHH
Q 006115 309 MELKPTLLAGVPRVFEKI 326 (660)
Q Consensus 309 ~~~~~t~l~~~p~~~~~l 326 (660)
+..++..++........+
T Consensus 125 ~~~~~~~ii~~~~~~~~~ 142 (576)
T 3gqw_A 125 ASCQPAAIITGDEWLPLV 142 (576)
T ss_dssp HHHCCSEEEECGGGHHHH
T ss_pred HhcCCCEEEecHHHHHHH
Confidence 999999999988766554
No 87
>2jtq_A Phage shock protein E; solution structure rhodanese, stress response, transferase; NMR {Escherichia coli} PDB: 2jtr_A 2jts_A
Probab=27.25 E-value=1.3e+02 Score=22.06 Aligned_cols=46 Identities=20% Similarity=0.146 Sum_probs=34.9
Q ss_pred eEEeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEeCChhhHHHHHHHHHhCCCe
Q 006115 75 VWKTYKEVYEEVLQIVSALRASGAEPGCRVGIYGANCPQWVEAMEACNALSLI 127 (660)
Q Consensus 75 ~~~Ty~el~~~~~~lA~~L~~~gv~~gd~V~l~~~n~~~~~~~~lA~~~~G~~ 127 (660)
..+.+.++.+ .+.+.+..+++.|+++|..+.....+...+...|..
T Consensus 22 ~~ip~~~l~~-------~~~~l~~~~~~~ivv~C~~g~rs~~aa~~L~~~G~~ 67 (85)
T 2jtq_A 22 INIPLKEVKE-------RIATAVPDKNDTVKVYCNAGRQSGQAKEILSEMGYT 67 (85)
T ss_dssp EECCHHHHHH-------HHHHHCCCTTSEEEEEESSSHHHHHHHHHHHHTTCS
T ss_pred EEcCHHHHHH-------HHHHhCCCCCCcEEEEcCCCchHHHHHHHHHHcCCC
Confidence 4677777654 344456788899999999998888888888888864
No 88
>2pqm_A Cysteine synthase; OASS, PLP, lyase; HET: PLP; 1.86A {Entamoeba histolytica} PDB: 3bm5_A*
Probab=25.33 E-value=2e+02 Score=28.08 Aligned_cols=64 Identities=9% Similarity=0.062 Sum_probs=42.0
Q ss_pred HHHcC-CCCCCEEEEEeCChhhHHHHHHHHHhCCCeEeecCCCCChhhHHHHhhcccceEEEEccc
Q 006115 93 LRASG-AEPGCRVGIYGANCPQWVEAMEACNALSLICVPLYDTLGPGAVNFILDHAEIDFVFVQDK 157 (660)
Q Consensus 93 L~~~g-v~~gd~V~l~~~n~~~~~~~~lA~~~~G~~~v~i~~~~~~~~l~~~l~~~~~~~vi~~~~ 157 (660)
+.+.| +++|+.|+.... +=.-..+.++|...|..++.+-|...+..-...++..++++++++..
T Consensus 69 a~~~g~~~~g~~vv~aSs-GN~g~alA~aa~~~G~~~~iv~p~~~~~~k~~~~~~~GA~V~~~~~~ 133 (343)
T 2pqm_A 69 AIKDGRLKPGMEIIESTS-GNTGIALCQAGAVFGYRVNIAMPSTMSVERQMIMKAFGAELILTEGK 133 (343)
T ss_dssp HHHHTSSCTTCEEEEECS-SHHHHHHHHHHHHHTCCEEEEEETTSCHHHHHHHHHTTCEEEEECGG
T ss_pred HHHcCCCCCCCEEEEECC-cHHHHHHHHHHHHcCCCEEEEECCCCCHHHHHHHHHCCCEEEEECCC
Confidence 33445 467776655543 44444566677789987776655444445566788899999999864
No 89
>3goh_A Alcohol dehydrogenase, zinc-containing; NP_718042.1, alcohol dehydrogenase superfamily protein, ALCO dehydrogenase groes-like domain; 1.55A {Shewanella oneidensis}
Probab=25.31 E-value=1.6e+02 Score=28.13 Aligned_cols=73 Identities=5% Similarity=-0.029 Sum_probs=48.5
Q ss_pred EEeHHHHHHHHHHHHHH---HHHcCCCCCCEEEEEeCChhhHHHHHHHHHhCCCeEeecCCCCChhhHHHHhhcccceEE
Q 006115 76 WKTYKEVYEEVLQIVSA---LRASGAEPGCRVGIYGANCPQWVEAMEACNALSLICVPLYDTLGPGAVNFILDHAEIDFV 152 (660)
Q Consensus 76 ~~Ty~el~~~~~~lA~~---L~~~gv~~gd~V~l~~~n~~~~~~~~lA~~~~G~~~v~i~~~~~~~~l~~~l~~~~~~~v 152 (660)
.+++.+.......++.. |...++++|++|++...-++-.+++.+|- ..|+.++.+. +.+.+ .++++.+++.+
T Consensus 115 ~~~~~~aa~l~~~~~ta~~al~~~~~~~g~~VlV~GaG~vG~~a~qlak-~~Ga~Vi~~~---~~~~~-~~~~~lGa~~v 189 (315)
T 3goh_A 115 NLSFERAAALPCPLLTAWQAFEKIPLTKQREVLIVGFGAVNNLLTQMLN-NAGYVVDLVS---ASLSQ-ALAAKRGVRHL 189 (315)
T ss_dssp TSCHHHHHTSHHHHHHHHHHHTTSCCCSCCEEEEECCSHHHHHHHHHHH-HHTCEEEEEC---SSCCH-HHHHHHTEEEE
T ss_pred CCCHHHHhhCccHHHHHHHHHhhcCCCCCCEEEEECCCHHHHHHHHHHH-HcCCEEEEEE---ChhhH-HHHHHcCCCEE
Confidence 36787765433333333 33348999999999999557777777776 4588777665 33343 34567889888
Q ss_pred E
Q 006115 153 F 153 (660)
Q Consensus 153 i 153 (660)
+
T Consensus 190 ~ 190 (315)
T 3goh_A 190 Y 190 (315)
T ss_dssp E
T ss_pred E
Confidence 7
No 90
>3ju7_A Putative PLP-dependent aminotransferase; NP_978343.1, struct genomics, joint center for structural genomics, JCSG; HET: LLP PGE; 2.19A {Bacillus cereus atcc 10987}
Probab=24.76 E-value=1.4e+02 Score=29.54 Aligned_cols=60 Identities=10% Similarity=-0.060 Sum_probs=37.7
Q ss_pred HHHHcCCCCCCEEEEEeCChhhHHHHHHHHHhCCCeEeecCCC-----CChhhHHHHhhccc--ceEEEE
Q 006115 92 ALRASGAEPGCRVGIYGANCPQWVEAMEACNALSLICVPLYDT-----LGPGAVNFILDHAE--IDFVFV 154 (660)
Q Consensus 92 ~L~~~gv~~gd~V~l~~~n~~~~~~~~lA~~~~G~~~v~i~~~-----~~~~~l~~~l~~~~--~~~vi~ 154 (660)
.|...++++||.|++-.+...-+ .-++...|+.++.++.. .+.+.+...+..-+ .++|+.
T Consensus 69 al~~l~~~~Gd~Vi~~~~~~~~~---~~~~~~~G~~~~~v~~~~~~~~~d~~~l~~~i~~~~~~tk~v~~ 135 (377)
T 3ju7_A 69 AIQLKKRKKGKYALMPSFTFPAT---PLAAIWCGLEPYFIDISIDDWYMDKTVLWDKIEELKEEVAIVVP 135 (377)
T ss_dssp HHHHHSCTTCCEEEEESSSCTHH---HHHHHHTTCEEEEECBCTTTCSBCHHHHHHHHHHHGGGEEEECC
T ss_pred HHHHcCCCCcCEEEECCCCcHHH---HHHHHHcCCEEEEEecCCccCCcCHHHHHHHHhcCCCCceEEEE
Confidence 34445788999888766654443 34556788877666532 36677777774334 666663
No 91
>2cvi_A 75AA long hypothetical regulatory protein ASNC; structural genomics, unknown function; 1.50A {Pyrococcus horikoshii} PDB: 2z4p_A 2e1a_A
Probab=23.01 E-value=2.2e+02 Score=20.78 Aligned_cols=33 Identities=12% Similarity=0.161 Sum_probs=23.1
Q ss_pred hhHHHHHhcCcCcceEEEEecCCCCeEEEEEEcC
Q 006115 530 EYLENVYCVAPIIEDIWVYGDSLKSMLVAVVVPC 563 (660)
Q Consensus 530 ~~iE~~l~~~p~V~~~~v~~~~~~~~~~a~v~~~ 563 (660)
.++++.|.++|.|.+|..+..+ .+.++-+.+.+
T Consensus 16 ~~~~~~l~~~peV~e~~~vtG~-~D~ll~v~~~d 48 (83)
T 2cvi_A 16 REVMEKLLAMPEVKEAYVVYGE-YDLIVKVETDT 48 (83)
T ss_dssp HHHHHHHHTSTTEEEEEECBSS-CSEEEEEEESS
T ss_pred HHHHHHHhCCCCeeEEEEEccc-CCEEEEEEECC
Confidence 6899999999999999987643 33433333333
No 92
>2v03_A Cysteine synthase B; pyridoxal phosphate, cysteine biosynthesis, transferase, ENZ kinetics, enzymatic sythesis of novel compounds; HET: LLP CIT; 1.33A {Escherichia coli} PDB: 2bhs_A* 2bht_A* 2jc3_A*
Probab=22.73 E-value=2.9e+02 Score=26.26 Aligned_cols=63 Identities=8% Similarity=-0.044 Sum_probs=42.5
Q ss_pred HHHcC-CCCCCEEEEEeCChhhHHHHHHHHHhCCCeEeecCCCCChhhHHHHhhcccceEEEEcc
Q 006115 93 LRASG-AEPGCRVGIYGANCPQWVEAMEACNALSLICVPLYDTLGPGAVNFILDHAEIDFVFVQD 156 (660)
Q Consensus 93 L~~~g-v~~gd~V~l~~~n~~~~~~~~lA~~~~G~~~v~i~~~~~~~~l~~~l~~~~~~~vi~~~ 156 (660)
+.+.| +++|+.|+... .+=.-..+.++|.+.|..++.+-|...+..-...++..++++++++.
T Consensus 52 a~~~g~~~~g~~vv~~s-sGN~g~a~A~~a~~~G~~~~iv~p~~~~~~k~~~~~~~Ga~v~~~~~ 115 (303)
T 2v03_A 52 AEKRGEIKPGDVLIEAT-SGNTGIALAMIAALKGYRMKLLMPDNMSQERRAAMRAYGAELILVTK 115 (303)
T ss_dssp HHHTTCCCTTCEEEEEC-SSHHHHHHHHHHHHHTCEEEEEEETTSCHHHHHHHHHTTCEEEEECT
T ss_pred HHHcCCCCCCCEEEEEC-CcHHHHHHHHHHHHcCCcEEEEECCCCCHHHHHHHHHcCCEEEEECC
Confidence 33445 46777666554 34444556667779999877766554444556688899999999986
No 93
>1ve1_A O-acetylserine sulfhydrylase; PLP, transferase, riken structural genomics/proteomics initi RSGI, structural genomics; HET: PLP; 1.45A {Thermus thermophilus} SCOP: c.79.1.1 PDB: 2eco_A* 2ecq_A* 2efy_A*
Probab=22.63 E-value=3e+02 Score=26.16 Aligned_cols=64 Identities=8% Similarity=0.024 Sum_probs=41.6
Q ss_pred HHHcC-CCCCC--EEEEEeCChhhHHHHHHHHHhCCCeEeecCCCCChhhHHHHhhcccceEEEEccc
Q 006115 93 LRASG-AEPGC--RVGIYGANCPQWVEAMEACNALSLICVPLYDTLGPGAVNFILDHAEIDFVFVQDK 157 (660)
Q Consensus 93 L~~~g-v~~gd--~V~l~~~n~~~~~~~~lA~~~~G~~~v~i~~~~~~~~l~~~l~~~~~~~vi~~~~ 157 (660)
+.+.| +++|+ .|+. ...+=.-..+.++|.+.|..++.+-|...+..-...++..++++++++..
T Consensus 51 a~~~g~~~~g~~~~vv~-assGN~g~a~A~~a~~~G~~~~i~~p~~~~~~k~~~~~~~Ga~V~~~~~~ 117 (304)
T 1ve1_A 51 AEERGILRPGSGQVIVE-PTSGNTGIGLAMIAASRGYRLILTMPAQMSEERKRVLKAFGAELVLTDPE 117 (304)
T ss_dssp HHHTTSCCTTSCCEEEE-SCCSHHHHHHHHHHHHHTCEEEEEEETTCCHHHHHHHHHTTCEEEEECTT
T ss_pred HHHcCCCCCCCccEEEE-eCCcHHHHHHHHHHHHcCCcEEEEeCCCCCHHHHHHHHHcCCEEEEECCC
Confidence 34445 56676 4433 33444445566777799998776655444445566788899999998864
No 94
>1y80_A Predicted cobalamin binding protein; corrinoid, factor IIIM, methyl transferase, structural genomics, PSI, protein structure initiative; HET: B1M; 1.70A {Moorella thermoacetica}
Probab=22.39 E-value=2.3e+02 Score=25.23 Aligned_cols=57 Identities=9% Similarity=-0.094 Sum_probs=44.0
Q ss_pred CCEEEEEeCCh----hhHHHHHHHHHhCCCeEeecCCCCChhhHHHHhhcccceEEEEccc
Q 006115 101 GCRVGIYGANC----PQWVEAMEACNALSLICVPLYDTLGPGAVNFILDHAEIDFVFVQDK 157 (660)
Q Consensus 101 gd~V~l~~~n~----~~~~~~~lA~~~~G~~~v~i~~~~~~~~l~~~l~~~~~~~vi~~~~ 157 (660)
+-+|++.+..+ +-..+....+-..|.-++.+....+.+.+...+++.++++|..+..
T Consensus 88 ~~~vll~~~~gd~H~iG~~~va~~l~~~G~~v~~LG~~vp~~~l~~~~~~~~~d~v~lS~~ 148 (210)
T 1y80_A 88 VGKIVLGTVKGDLHDIGKNLVAMMLESGGFTVYNLGVDIEPGKFVEAVKKYQPDIVGMSAL 148 (210)
T ss_dssp CCEEEEEEBTTCCCCHHHHHHHHHHHHTTCEEEECCSSBCHHHHHHHHHHHCCSEEEEECC
T ss_pred CCEEEEEeCCCcccHHHHHHHHHHHHHCCCEEEECCCCCCHHHHHHHHHHcCCCEEEEecc
Confidence 33677776654 3344455555688999999999999999999999999999988764
No 95
>2cf5_A Atccad5, CAD, cinnamyl alcohol dehydrogenase; lignin biosynthesis, metal-binding, NADP, oxidoreductase, zinc; 2.0A {Arabidopsis thaliana} PDB: 2cf6_A*
Probab=22.20 E-value=2e+02 Score=28.25 Aligned_cols=62 Identities=18% Similarity=0.133 Sum_probs=42.0
Q ss_pred HHHHcCCC-CCCEEEEEeCChhhHHHHHHHHHhCCCeEeecCCCCChhhHHHHhhcccceEEEEcc
Q 006115 92 ALRASGAE-PGCRVGIYGANCPQWVEAMEACNALSLICVPLYDTLGPGAVNFILDHAEIDFVFVQD 156 (660)
Q Consensus 92 ~L~~~gv~-~gd~V~l~~~n~~~~~~~~lA~~~~G~~~v~i~~~~~~~~l~~~l~~~~~~~vi~~~ 156 (660)
.|.+.+++ +|++|+|...-.+-.+++.+|-. .|+.++.+... .+.+..+.++.+++.++...
T Consensus 171 ~l~~~~~~~~g~~VlV~GaG~vG~~a~qlak~-~Ga~Vi~~~~~--~~~~~~~~~~lGa~~vi~~~ 233 (357)
T 2cf5_A 171 PLSHFGLKQPGLRGGILGLGGVGHMGVKIAKA-MGHHVTVISSS--NKKREEALQDLGADDYVIGS 233 (357)
T ss_dssp HHHHTSTTSTTCEEEEECCSHHHHHHHHHHHH-HTCEEEEEESS--TTHHHHHHTTSCCSCEEETT
T ss_pred HHHhcCCCCCCCEEEEECCCHHHHHHHHHHHH-CCCeEEEEeCC--hHHHHHHHHHcCCceeeccc
Confidence 34556888 99999999876677777777664 58866555543 44555555578887766543
No 96
>3ndn_A O-succinylhomoserine sulfhydrylase; seattle structural genomics center for infectious disease, S mycobacterium, PLP, schiff base; HET: LLP; 1.85A {Mycobacterium tuberculosis}
Probab=22.15 E-value=5.9e+02 Score=25.32 Aligned_cols=57 Identities=18% Similarity=0.079 Sum_probs=23.8
Q ss_pred EEeCChhhHHH-HHHHHHhCCCeEeecCCCCChh--hHHHHhhcccceEEEEccchhhhh
Q 006115 106 IYGANCPQWVE-AMEACNALSLICVPLYDTLGPG--AVNFILDHAEIDFVFVQDKKVKEL 162 (660)
Q Consensus 106 l~~~n~~~~~~-~~lA~~~~G~~~v~i~~~~~~~--~l~~~l~~~~~~~vi~~~~~~~~~ 162 (660)
++..++.+.+. ++.++...|-.++..++.+..- .+..++...+++++.++....+.+
T Consensus 100 ~~~~sG~~Ai~~al~~l~~~Gd~Vi~~~~~y~~~~~~~~~~~~~~g~~~~~v~~~d~~~l 159 (414)
T 3ndn_A 100 FATASGMAAVFTSLGALLGAGDRLVAARSLFGSCFVVCSEILPRWGVQTVFVDGDDLSQW 159 (414)
T ss_dssp EEESSHHHHHHHHHHTTCCTTCEEEEESCCCHHHHHHHHTHHHHTTCEEEEECTTCHHHH
T ss_pred EEECCHHHHHHHHHHHHhCCCCEEEEcCCccchHHHHHHHHHHHcCcEEEEeCCCCHHHH
Confidence 33444444332 2333334444444444444331 122233445566655554433333
No 97
>3ri6_A O-acetylhomoserine sulfhydrylase; PYR 5'-phosphate, gamma-elimination, direct sulfhydrylation, CY metabolism, protein thiocarboxylate, TR; 2.20A {Wolinella succinogenes}
Probab=21.17 E-value=2.7e+02 Score=28.16 Aligned_cols=61 Identities=11% Similarity=-0.045 Sum_probs=33.9
Q ss_pred EEEeCChhhHHH-HHHHHHhCCCeEeecCCCCChh--hHHHHhhcccceEEEEccchhhhhhcc
Q 006115 105 GIYGANCPQWVE-AMEACNALSLICVPLYDTLGPG--AVNFILDHAEIDFVFVQDKKVKELLSP 165 (660)
Q Consensus 105 ~l~~~n~~~~~~-~~lA~~~~G~~~v~i~~~~~~~--~l~~~l~~~~~~~vi~~~~~~~~~~~~ 165 (660)
++++.++.+.+. ++.++...|-.++..++.+..- .+...+...+++++.++....+.+.+.
T Consensus 100 ~v~~~sG~~Ai~~al~al~~~Gd~Vi~~~~~y~~~~~~~~~~~~~~G~~~~~v~~~d~~~l~~a 163 (430)
T 3ri6_A 100 VLALGSGMAAISTAILTLARAGDSVVTTDRLFGHTLSLFQKTLPSFGIEVRFVDVMDSLAVEHA 163 (430)
T ss_dssp EEEESCHHHHHHHHHHHHCCTTCEEEEETTCCHHHHHHHHTHHHHTTCEEEEECTTCHHHHHHH
T ss_pred EEEECCHHHHHHHHHHHHhCCCCEEEEcCCCchhHHHHHHHHHHHcCCEEEEeCCCCHHHHHHh
Confidence 455666665544 3445556665555555555432 222356677788877776555444433
No 98
>1h2b_A Alcohol dehydrogenase; oxidoreductase, archaea, hyperthermophIle, zinc; HET: OCA NAJ; 1.62A {Aeropyrum pernix} SCOP: b.35.1.2 c.2.1.1
Probab=21.09 E-value=2.6e+02 Score=27.38 Aligned_cols=62 Identities=15% Similarity=0.117 Sum_probs=43.7
Q ss_pred HHHH--cCCCCCCEEEEEeCChhhHHHHHHHHHhCCCeEeecCCCCChhhHHHHhhcccceEEEEcc
Q 006115 92 ALRA--SGAEPGCRVGIYGANCPQWVEAMEACNALSLICVPLYDTLGPGAVNFILDHAEIDFVFVQD 156 (660)
Q Consensus 92 ~L~~--~gv~~gd~V~l~~~n~~~~~~~~lA~~~~G~~~v~i~~~~~~~~l~~~l~~~~~~~vi~~~ 156 (660)
.|.+ .++++|++|+|..--.+-.+++.+|-...|+.++.++.. ++.+. ++++.+++.++...
T Consensus 176 al~~~~~~~~~g~~VlV~GaG~vG~~avqlak~~~Ga~Vi~~~~~--~~~~~-~~~~lGa~~vi~~~ 239 (359)
T 1h2b_A 176 AVKKAARTLYPGAYVAIVGVGGLGHIAVQLLKVMTPATVIALDVK--EEKLK-LAERLGADHVVDAR 239 (359)
T ss_dssp HHHHHHTTCCTTCEEEEECCSHHHHHHHHHHHHHCCCEEEEEESS--HHHHH-HHHHTTCSEEEETT
T ss_pred HHHhhccCCCCCCEEEEECCCHHHHHHHHHHHHcCCCeEEEEeCC--HHHHH-HHHHhCCCEEEecc
Confidence 3555 689999999999986677777777775548876666543 44443 45678888777543
No 99
>3two_A Mannitol dehydrogenase; cinnamyl-alcohol dehydrogenase, NADP(H) oxidoreductase; HET: NDP; 2.18A {Helicobacter pylori}
Probab=20.96 E-value=2.3e+02 Score=27.64 Aligned_cols=73 Identities=14% Similarity=0.054 Sum_probs=47.2
Q ss_pred EeHHHHHHHHHHH---HHHHHHcCCCCCCEEEEEeCChhhHHHHHHHHHhCCCeEeecCCCCChhhHHHHhhcccceEEE
Q 006115 77 KTYKEVYEEVLQI---VSALRASGAEPGCRVGIYGANCPQWVEAMEACNALSLICVPLYDTLGPGAVNFILDHAEIDFVF 153 (660)
Q Consensus 77 ~Ty~el~~~~~~l---A~~L~~~gv~~gd~V~l~~~n~~~~~~~~lA~~~~G~~~v~i~~~~~~~~l~~~l~~~~~~~vi 153 (660)
+++.+........ -+.|...++++|++|+|...-++-.+++.+|- ..|+.++.+... ++.+. ++++.+++.++
T Consensus 150 ~~~~~aa~l~~~~~ta~~~l~~~~~~~g~~VlV~GaG~vG~~a~qla~-~~Ga~Vi~~~~~--~~~~~-~~~~lGa~~v~ 225 (348)
T 3two_A 150 APLEKVAPLLCAGITTYSPLKFSKVTKGTKVGVAGFGGLGSMAVKYAV-AMGAEVSVFARN--EHKKQ-DALSMGVKHFY 225 (348)
T ss_dssp SCHHHHGGGGTHHHHHHHHHHHTTCCTTCEEEEESCSHHHHHHHHHHH-HTTCEEEEECSS--STTHH-HHHHTTCSEEE
T ss_pred CCHHHhhhhhhhHHHHHHHHHhcCCCCCCEEEEECCcHHHHHHHHHHH-HCCCeEEEEeCC--HHHHH-HHHhcCCCeec
Confidence 5666654222221 23455668999999999987556777777765 568877666544 33333 55678888887
No 100
>3pc3_A CG1753, isoform A; CBS, synthase, PLP, heme, aminoacrylate, lyase; HET: HEM P1T; 1.55A {Drosophila melanogaster} PDB: 3pc2_A* 3pc4_A*
Probab=20.88 E-value=2.6e+02 Score=29.21 Aligned_cols=62 Identities=11% Similarity=0.111 Sum_probs=44.0
Q ss_pred HHcC-CCCCCEEEEEeCChhhHHHHHHHHHhCCCeEeecCCCCChhhHHHHhhcccceEEEEcc
Q 006115 94 RASG-AEPGCRVGIYGANCPQWVEAMEACNALSLICVPLYDTLGPGAVNFILDHAEIDFVFVQD 156 (660)
Q Consensus 94 ~~~g-v~~gd~V~l~~~n~~~~~~~~lA~~~~G~~~v~i~~~~~~~~l~~~l~~~~~~~vi~~~ 156 (660)
.+.| +++|+.|+- ...+=.-..+.++|...|..++.+-|...+..-...++..++.++++..
T Consensus 105 ~~~g~~~~g~~vv~-~ssGN~g~a~A~~a~~~G~~~~iv~p~~~~~~k~~~~~~~GA~v~~~~~ 167 (527)
T 3pc3_A 105 EEQGLLKPGYTIIE-PTSGNTGIGLAMACAVKGYKCIIVMPEKMSNEKVSALRTLGAKIIRTPT 167 (527)
T ss_dssp HHHTCCCTTCEEEE-ECSSHHHHHHHHHHHHHTCEEEEEEETTSCHHHHHHHHHTTCEEEEECT
T ss_pred HHcCCCCCCCEEEE-eCCCHHHHHHHHHHHHhCCeEEEEEcCCCCHHHHHHHHHCCCEEEEeCC
Confidence 3445 578887755 4444455666678888899887776655555666788999999999875
No 101
>4h1h_A LMO1638 protein; MCCF-like, csgid, MCCF homolog, structural genomics, niaid, institute of allergy and infectious diseases; 2.46A {Listeria monocytogenes}
Probab=20.70 E-value=1.2e+02 Score=29.50 Aligned_cols=61 Identities=8% Similarity=0.058 Sum_probs=37.0
Q ss_pred CCCCCCEEEEEeCChh------hHHH-HHHHHHhCCCeEeecCCCC------------ChhhHHHHhhcccceEEEEccc
Q 006115 97 GAEPGCRVGIYGANCP------QWVE-AMEACNALSLICVPLYDTL------------GPGAVNFILDHAEIDFVFVQDK 157 (660)
Q Consensus 97 gv~~gd~V~l~~~n~~------~~~~-~~lA~~~~G~~~v~i~~~~------------~~~~l~~~l~~~~~~~vi~~~~ 157 (660)
.+++||+|+|++|.+. +-+- +.=-+-..|..++.-+... .+++|..++.+-.+++|++...
T Consensus 8 ~L~~GD~I~ivaPSs~~~~~~~~~~~~~~~~L~~~G~~v~~~~~~~~~~~~~agtd~~Ra~dL~~a~~Dp~i~aI~~~rG 87 (327)
T 4h1h_A 8 KLKQGDEIRIIAPSRSIGIMADNQVEIAVNRLTDMGFKVTFGEHVAEMDCMMSSSIRSRVADIHEAFNDSSVKAILTVIG 87 (327)
T ss_dssp CCCTTCEEEEECSSSCGGGSCHHHHHHHHHHHHHTTCEEEECTTTTCCCTTSSCCHHHHHHHHHHHHHCTTEEEEEESCC
T ss_pred CCCCCCEEEEEeCCCCcCccCHHHHHHHHHHHHhCCCEEEECcchhhccCcccCCHHHHHHHHHHHhhCCCCCEEEEcCC
Confidence 5899999999999752 1221 1222335677766432111 2345677777777888887653
No 102
>3dwg_A Cysteine synthase B; sulfur carrier protein complex, beta-grAsp fold, amino-acid biosynthesis; HET: PLP; 1.53A {Mycobacterium tuberculosis} SCOP: c.79.1.0 PDB: 3fgp_A* 3dki_A* 3dwi_A*
Probab=20.69 E-value=3.1e+02 Score=26.51 Aligned_cols=64 Identities=11% Similarity=0.058 Sum_probs=44.3
Q ss_pred HHHcC-CCCCCEEEEEeCChhhHHHHHHHHHhCCCeEeecCCCCChhhHHHHhhcccceEEEEccc
Q 006115 93 LRASG-AEPGCRVGIYGANCPQWVEAMEACNALSLICVPLYDTLGPGAVNFILDHAEIDFVFVQDK 157 (660)
Q Consensus 93 L~~~g-v~~gd~V~l~~~n~~~~~~~~lA~~~~G~~~v~i~~~~~~~~l~~~l~~~~~~~vi~~~~ 157 (660)
+.+.| +++|+.|+.. ..+=.-..+.++|.+.|..++.+-|...+..-...++..++++++++..
T Consensus 64 a~~~g~l~~~~~vv~a-SsGN~g~alA~aa~~~G~~~~iv~p~~~~~~k~~~~~~~GA~V~~~~~~ 128 (325)
T 3dwg_A 64 AEADGLLRPGATILEP-TSGNTGISLAMAARLKGYRLICVMPENTSVERRQLLELYGAQIIFSAAE 128 (325)
T ss_dssp HHHTTCCCTTCEEEEE-CSSHHHHHHHHHHHHHTCEEEEEEESSSCHHHHHHHHHHTCEEEEECST
T ss_pred HHHcCCCCCCCEEEEe-CCcHHHHHHHHHHHHcCCcEEEEECCCCCHHHHHHHHHCCCEEEEECCC
Confidence 34445 5677776554 3455556667777888998777666555555567889999999999863
No 103
>3s2e_A Zinc-containing alcohol dehydrogenase superfamily; FURX, oxidoreductase; HET: NAD; 1.76A {Ralstonia eutropha} PDB: 3s1l_A* 3s2f_A* 3s2g_A* 3s2i_A* 1llu_A* 3meq_A*
Probab=20.58 E-value=2.4e+02 Score=27.23 Aligned_cols=76 Identities=16% Similarity=0.150 Sum_probs=48.9
Q ss_pred EeHHHHHHHHHH---HHHHHHHcCCCCCCEEEEEeCChhhHHHHHHHHHhCCCeEeecCCCCChhhHHHHhhcccceEEE
Q 006115 77 KTYKEVYEEVLQ---IVSALRASGAEPGCRVGIYGANCPQWVEAMEACNALSLICVPLYDTLGPGAVNFILDHAEIDFVF 153 (660)
Q Consensus 77 ~Ty~el~~~~~~---lA~~L~~~gv~~gd~V~l~~~n~~~~~~~~lA~~~~G~~~v~i~~~~~~~~l~~~l~~~~~~~vi 153 (660)
+++.+....... .-+.|...++++|++|++...-++-.+++.+|- ..|+.++.++.. ++.+. ++++.+++.++
T Consensus 140 ~~~~~aa~l~~~~~ta~~~l~~~~~~~g~~VlV~GaG~vG~~a~qla~-~~Ga~Vi~~~~~--~~~~~-~~~~lGa~~~i 215 (340)
T 3s2e_A 140 VGFVEIAPILCAGVTVYKGLKVTDTRPGQWVVISGIGGLGHVAVQYAR-AMGLRVAAVDID--DAKLN-LARRLGAEVAV 215 (340)
T ss_dssp SCHHHHGGGGTHHHHHHHHHHTTTCCTTSEEEEECCSTTHHHHHHHHH-HTTCEEEEEESC--HHHHH-HHHHTTCSEEE
T ss_pred CCHHHhhcccchhHHHHHHHHHcCCCCCCEEEEECCCHHHHHHHHHHH-HCCCeEEEEeCC--HHHHH-HHHHcCCCEEE
Confidence 666665432222 123445558999999999887667777777776 468877666543 44444 56778888776
Q ss_pred Ecc
Q 006115 154 VQD 156 (660)
Q Consensus 154 ~~~ 156 (660)
...
T Consensus 216 ~~~ 218 (340)
T 3s2e_A 216 NAR 218 (340)
T ss_dssp ETT
T ss_pred eCC
Confidence 543
No 104
>3oon_A Outer membrane protein (TPN50); protein structure initiative, PSI-2, structural genomics, MI center for structural genomics, MCSG; 1.79A {Borrelia burgdorferi}
Probab=20.32 E-value=2.2e+02 Score=22.79 Aligned_cols=79 Identities=11% Similarity=-0.017 Sum_probs=46.3
Q ss_pred cccCCCCCCCCCCCCcHHHHHHHHHHhCCCCCceeeeccccCCCCCceEEeHHHHHHHHHHHHHHHHHcCCCCCCEEEEE
Q 006115 28 LLASNGFPSVDSDLNTAWDIFSMSVQKYPGNRMLGWRPFVDGKFGPYVWKTYKEVYEEVLQIVSALRASGAEPGCRVGIY 107 (660)
Q Consensus 28 ~~~~~~~~~~~~~~~ti~~~l~~~a~~~pd~~a~~~~~~~~~~~~~~~~~Ty~el~~~~~~lA~~L~~~gv~~gd~V~l~ 107 (660)
..++.+-..+.+......+.+....+.+|+....+... .+..+ ...+-+.==.+||..++.+|.+.|+...+++.+.
T Consensus 19 i~F~~~s~~L~~~~~~~L~~~a~~l~~~~~~~i~I~Gh--tD~~g-~~~~N~~LS~~RA~aV~~~L~~~Gv~~~~ri~~~ 95 (123)
T 3oon_A 19 IEFYPNSFQILQKEYKKIDLIAKLLEKFKKNNILIEGH--TEQFG-LEEEMHELSEKRARAIGNYLIKMKVKDKDQILFK 95 (123)
T ss_dssp EEBCTTSCCBCGGGHHHHHHHHHHHHHSCSCCEEEEEC--CCSCC-CHHHHHHHHHHHHHHHHHHHHHTTSSCGGGEEEE
T ss_pred EEeCCCChhcCHHHHHHHHHHHHHHHHCCCceEEEEEE--eCCCC-ChHHHHHHHHHHHHHHHHHHHHcCCCchHeEEEE
Confidence 33444444555566666666767777889855444431 11111 1222222335789999999999999745566554
Q ss_pred eC
Q 006115 108 GA 109 (660)
Q Consensus 108 ~~ 109 (660)
..
T Consensus 96 g~ 97 (123)
T 3oon_A 96 GW 97 (123)
T ss_dssp EC
T ss_pred EE
Confidence 43
Done!