Query 006117
Match_columns 660
No_of_seqs 510 out of 3111
Neff 5.5
Searched_HMMs 46136
Date Thu Mar 28 18:35:50 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/006117.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/006117hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PLN02318 phosphoribulokinase/u 100.0 1E-175 2E-180 1449.2 46.3 654 1-658 1-655 (656)
2 COG0572 Udk Uridine kinase [Nu 100.0 6.1E-35 1.3E-39 292.7 16.8 175 64-239 6-189 (218)
3 PTZ00301 uridine kinase; Provi 100.0 5.1E-30 1.1E-34 257.8 14.4 175 66-241 3-190 (210)
4 PF00485 PRK: Phosphoribulokin 100.0 5.9E-29 1.3E-33 245.5 12.8 171 68-240 1-188 (194)
5 cd02029 PRK_like Phosphoribulo 100.0 9.6E-28 2.1E-32 247.7 15.4 170 68-239 1-201 (277)
6 COG1437 CyaB Adenylate cyclase 99.9 3.9E-26 8.5E-31 221.5 16.5 150 262-413 13-177 (178)
7 cd02025 PanK Pantothenate kina 99.9 4.7E-26 1E-30 230.4 13.7 174 68-241 1-211 (220)
8 PLN02348 phosphoribulokinase 99.9 1.4E-25 3.1E-30 242.2 17.3 175 61-238 44-242 (395)
9 cd02028 UMPK_like Uridine mono 99.9 1E-25 2.2E-30 220.8 13.5 169 68-238 1-178 (179)
10 PRK05480 uridine/cytidine kina 99.9 2E-25 4.4E-30 222.2 14.1 178 64-242 4-190 (209)
11 PRK15453 phosphoribulokinase; 99.9 3.3E-25 7.1E-30 230.5 16.2 173 65-238 4-206 (290)
12 KOG4203 Armadillo/beta-Catenin 99.9 9.1E-27 2E-31 258.4 4.8 398 61-618 39-463 (473)
13 TIGR00318 cyaB adenylyl cyclas 99.9 2.6E-24 5.6E-29 210.5 17.3 147 263-410 14-173 (174)
14 TIGR00235 udk uridine kinase. 99.9 2.3E-24 5E-29 214.8 15.0 174 67-241 7-189 (207)
15 TIGR00554 panK_bact pantothena 99.9 1.1E-23 2.4E-28 221.2 15.7 179 63-241 59-279 (290)
16 cd02023 UMPK Uridine monophosp 99.9 2.7E-23 5.9E-28 205.0 16.0 175 68-243 1-184 (198)
17 PRK05439 pantothenate kinase; 99.9 3.7E-23 8E-28 218.9 17.4 179 62-240 82-298 (311)
18 cd02026 PRK Phosphoribulokinas 99.9 7.3E-23 1.6E-27 213.5 15.7 170 68-240 1-177 (273)
19 PRK07429 phosphoribulokinase; 99.9 1.1E-22 2.4E-27 217.1 16.2 175 63-240 5-186 (327)
20 PRK09270 nucleoside triphospha 99.8 5.1E-20 1.1E-24 186.7 15.5 181 62-244 29-225 (229)
21 PRK06696 uridine kinase; Valid 99.8 7.7E-20 1.7E-24 184.7 13.5 178 63-241 19-211 (223)
22 cd02024 NRK1 Nicotinamide ribo 99.8 1.7E-19 3.7E-24 178.7 7.9 158 68-225 1-179 (187)
23 cd07890 CYTH-like_AC_IV-like A 99.8 6.7E-18 1.5E-22 163.9 15.4 146 262-408 11-169 (169)
24 COG1135 AbcC ABC-type metal io 99.8 2.5E-20 5.5E-25 194.4 -1.9 265 33-338 1-296 (339)
25 PRK07667 uridine kinase; Provi 99.7 1.1E-17 2.3E-22 165.8 10.4 165 64-237 15-192 (193)
26 COG1126 GlnQ ABC-type polar am 99.7 1.6E-17 3.5E-22 166.3 8.4 164 41-214 6-196 (240)
27 COG3842 PotA ABC-type spermidi 99.7 1.7E-18 3.7E-23 185.8 1.1 138 41-181 9-170 (352)
28 COG1116 TauB ABC-type nitrate/ 99.7 2.2E-17 4.7E-22 168.7 5.5 168 41-217 7-194 (248)
29 COG3839 MalK ABC-type sugar tr 99.7 2.2E-17 4.8E-22 176.4 3.3 138 41-181 7-167 (338)
30 COG1118 CysA ABC-type sulfate/ 99.7 3.2E-17 6.9E-22 171.1 3.9 136 43-181 8-171 (345)
31 COG1136 SalX ABC-type antimicr 99.7 8E-17 1.7E-21 163.5 5.8 144 34-180 2-175 (226)
32 COG1127 Ttg2A ABC-type transpo 99.6 2.1E-16 4.5E-21 160.4 7.6 197 38-270 9-235 (263)
33 COG1124 DppF ABC-type dipeptid 99.6 3.2E-16 7E-21 159.3 7.0 144 34-180 4-174 (252)
34 TIGR02314 ABC_MetN D-methionin 99.6 1.6E-16 3.4E-21 171.1 4.3 148 50-207 18-194 (343)
35 PRK06547 hypothetical protein; 99.6 2.5E-15 5.5E-20 147.0 11.0 153 63-238 12-171 (172)
36 PLN03046 D-glycerate 3-kinase; 99.6 6.3E-15 1.4E-19 160.7 14.5 165 64-229 210-432 (460)
37 COG1120 FepC ABC-type cobalami 99.6 6.1E-16 1.3E-20 159.9 6.1 167 38-214 3-199 (258)
38 COG1072 CoaA Panthothenate kin 99.6 7E-15 1.5E-19 152.1 13.8 178 60-239 76-270 (283)
39 COG1125 OpuBA ABC-type proline 99.6 9.9E-16 2.1E-20 156.6 4.8 166 41-215 5-197 (309)
40 COG1121 ZnuC ABC-type Mn/Zn tr 99.5 5.5E-15 1.2E-19 152.3 6.5 165 38-212 5-197 (254)
41 TIGR03265 PhnT2 putative 2-ami 99.5 7.4E-15 1.6E-19 158.7 7.7 138 40-180 7-167 (353)
42 PRK13537 nodulation ABC transp 99.5 1E-14 2.2E-19 154.5 8.5 160 38-207 8-191 (306)
43 PRK11153 metN DL-methionine tr 99.5 3.7E-15 8.1E-20 160.3 4.9 148 49-206 17-193 (343)
44 PRK11650 ugpC glycerol-3-phosp 99.5 1E-14 2.2E-19 157.8 7.6 138 40-180 6-167 (356)
45 PRK11432 fbpC ferric transport 99.5 1.2E-14 2.7E-19 156.9 7.6 138 40-180 9-169 (351)
46 PLN02796 D-glycerate 3-kinase 99.5 5.7E-14 1.2E-18 150.6 12.6 175 52-227 81-318 (347)
47 PRK13536 nodulation factor exp 99.5 1.6E-14 3.6E-19 155.3 8.3 160 37-206 41-224 (340)
48 PRK08233 hypothetical protein; 99.5 9.8E-14 2.1E-18 133.8 12.8 151 66-239 3-160 (182)
49 PRK09452 potA putrescine/sperm 99.5 1.8E-14 3.8E-19 157.0 7.8 138 40-180 17-177 (375)
50 COG1131 CcmA ABC-type multidru 99.5 2E-14 4.4E-19 151.6 7.4 158 40-207 7-190 (293)
51 COG0411 LivG ABC-type branched 99.5 1.7E-14 3.6E-19 147.0 6.1 189 38-262 5-231 (250)
52 COG3638 ABC-type phosphate/pho 99.5 1.7E-14 3.8E-19 146.2 6.1 164 41-214 7-208 (258)
53 PRK10851 sulfate/thiosulfate t 99.5 2.4E-14 5.2E-19 154.8 7.5 138 40-180 5-169 (353)
54 TIGR03258 PhnT 2-aminoethylpho 99.5 2.4E-14 5.2E-19 155.3 7.2 137 41-180 9-170 (362)
55 COG1137 YhbG ABC-type (unclass 99.5 5.7E-15 1.2E-19 146.6 1.7 158 38-205 5-190 (243)
56 COG2884 FtsE Predicted ATPase 99.5 1.9E-14 4E-19 141.9 5.1 160 35-207 3-190 (223)
57 COG1122 CbiO ABC-type cobalt t 99.5 1.4E-13 3E-18 141.2 11.4 139 39-180 5-171 (235)
58 PRK11000 maltose/maltodextrin 99.5 3.8E-14 8.2E-19 154.0 7.6 138 40-180 6-166 (369)
59 cd03261 ABC_Org_Solvent_Resist 99.5 8.1E-14 1.8E-18 141.2 8.8 137 41-180 4-169 (235)
60 TIGR00960 3a0501s02 Type II (G 99.5 6.8E-14 1.5E-18 139.8 7.7 137 41-180 5-171 (216)
61 cd03255 ABC_MJ0796_Lo1CDE_FtsE 99.5 7.5E-14 1.6E-18 139.6 7.9 136 42-180 5-173 (218)
62 TIGR01288 nodI ATP-binding ABC 99.5 7.2E-14 1.6E-18 147.6 8.1 157 40-206 7-187 (303)
63 cd03230 ABC_DR_subfamily_A Thi 99.5 8.1E-14 1.7E-18 135.3 7.7 117 42-180 5-128 (173)
64 cd03269 ABC_putative_ATPase Th 99.5 7.8E-14 1.7E-18 138.8 7.6 156 41-206 4-180 (210)
65 COG4555 NatA ABC-type Na+ tran 99.5 1.2E-14 2.6E-19 144.5 1.5 140 34-180 2-166 (245)
66 cd03218 ABC_YhbG The ABC trans 99.5 1.2E-13 2.6E-18 139.4 8.2 156 41-206 4-185 (232)
67 cd03265 ABC_DrrA DrrA is the A 99.5 1.2E-13 2.6E-18 138.6 8.1 137 41-180 4-164 (220)
68 PRK09493 glnQ glutamine ABC tr 99.5 1.1E-13 2.5E-18 140.5 8.0 137 41-180 5-169 (240)
69 PRK11607 potG putrescine trans 99.5 1.2E-13 2.5E-18 150.7 8.4 138 40-180 22-182 (377)
70 cd03259 ABC_Carb_Solutes_like 99.5 1.1E-13 2.4E-18 138.1 7.5 137 41-180 4-163 (213)
71 cd03296 ABC_CysA_sulfate_impor 99.5 1.5E-13 3.2E-18 139.8 8.5 138 40-180 5-169 (239)
72 TIGR03608 L_ocin_972_ABC putat 99.4 8.7E-14 1.9E-18 137.7 6.6 136 42-180 3-167 (206)
73 TIGR01188 drrA daunorubicin re 99.4 9.7E-14 2.1E-18 146.5 7.1 149 48-206 4-176 (302)
74 cd03293 ABC_NrtD_SsuB_transpor 99.4 1.5E-13 3.2E-18 138.0 7.8 136 42-180 5-164 (220)
75 cd03258 ABC_MetN_methionine_tr 99.4 1.2E-13 2.6E-18 139.6 7.1 157 41-207 5-194 (233)
76 cd03268 ABC_BcrA_bacitracin_re 99.4 1.7E-13 3.7E-18 136.2 7.9 137 41-180 4-159 (208)
77 TIGR02673 FtsE cell division A 99.4 1.2E-13 2.5E-18 137.8 6.8 156 41-206 5-189 (214)
78 cd03224 ABC_TM1139_LivF_branch 99.4 1.7E-13 3.6E-18 137.3 7.9 137 41-180 4-165 (222)
79 PRK09473 oppD oligopeptide tra 99.4 1.6E-13 3.4E-18 147.1 8.2 147 31-180 10-194 (330)
80 PRK13540 cytochrome c biogenes 99.4 8.7E-14 1.9E-18 137.9 5.7 156 41-206 5-179 (200)
81 TIGR02315 ABC_phnC phosphonate 99.4 1.5E-13 3.2E-18 139.7 7.3 137 41-180 5-178 (243)
82 cd03219 ABC_Mj1267_LivG_branch 99.4 1.6E-13 3.4E-18 138.8 7.5 156 41-206 4-195 (236)
83 COG1117 PstB ABC-type phosphat 99.4 1.9E-13 4.2E-18 137.0 7.9 139 38-180 8-182 (253)
84 PRK09536 btuD corrinoid ABC tr 99.4 1.7E-13 3.8E-18 150.5 8.3 159 39-207 5-192 (402)
85 cd03266 ABC_NatA_sodium_export 99.4 1.3E-13 2.7E-18 137.9 6.5 137 41-180 5-169 (218)
86 COG0410 LivF ABC-type branched 99.4 1.9E-13 4.2E-18 138.3 7.7 140 38-180 4-169 (237)
87 PRK11124 artP arginine transpo 99.4 2.1E-13 4.6E-18 138.7 8.2 158 40-207 5-194 (242)
88 cd03229 ABC_Class3 This class 99.4 1.5E-13 3.2E-18 134.0 6.6 120 41-180 4-133 (178)
89 PRK11629 lolD lipoprotein tran 99.4 2.4E-13 5.3E-18 137.7 8.4 147 50-206 22-198 (233)
90 cd03262 ABC_HisP_GlnQ_permease 99.4 2E-13 4.4E-18 135.8 7.7 156 41-206 4-187 (213)
91 TIGR02211 LolD_lipo_ex lipopro 99.4 2.2E-13 4.7E-18 136.5 7.9 128 50-180 18-174 (221)
92 TIGR03522 GldA_ABC_ATP gliding 99.4 2E-13 4.3E-18 144.2 7.8 138 40-180 5-166 (301)
93 PRK11614 livF leucine/isoleuci 99.4 2.1E-13 4.5E-18 138.4 7.2 157 40-206 8-189 (237)
94 TIGR01186 proV glycine betaine 99.4 1.3E-13 2.7E-18 149.8 6.0 131 47-180 3-162 (363)
95 cd03256 ABC_PhnC_transporter A 99.4 2.7E-13 5.8E-18 137.4 8.0 156 41-206 4-197 (241)
96 cd03246 ABCC_Protease_Secretio 99.4 2.3E-13 4.9E-18 132.2 7.0 126 50-206 15-148 (173)
97 PRK15079 oligopeptide ABC tran 99.4 2.5E-13 5.3E-18 145.7 8.0 129 49-180 33-194 (331)
98 PRK14247 phosphate ABC transpo 99.4 3.1E-13 6.7E-18 138.2 8.4 137 41-180 7-179 (250)
99 COG4152 ABC-type uncharacteriz 99.4 1.5E-13 3.3E-18 140.0 5.8 165 40-214 5-190 (300)
100 cd03226 ABC_cobalt_CbiO_domain 99.4 2.2E-13 4.7E-18 135.3 6.8 155 42-206 4-178 (205)
101 cd03225 ABC_cobalt_CbiO_domain 99.4 2.5E-13 5.4E-18 135.1 7.2 136 42-180 4-167 (211)
102 PRK10908 cell division protein 99.4 2.9E-13 6.3E-18 136.0 7.6 137 41-180 5-170 (222)
103 cd03301 ABC_MalK_N The N-termi 99.4 2.7E-13 5.9E-18 135.0 7.4 137 41-180 4-163 (213)
104 PRK10619 histidine/lysine/argi 99.4 3.3E-13 7.1E-18 138.8 8.2 157 40-206 8-204 (257)
105 TIGR01189 ccmA heme ABC export 99.4 3.8E-13 8.2E-18 133.0 8.2 137 41-180 4-160 (198)
106 PRK13539 cytochrome c biogenes 99.4 3.6E-13 7.8E-18 134.3 8.1 138 40-180 5-160 (207)
107 PRK13538 cytochrome c biogenes 99.4 3.7E-13 8.1E-18 133.8 8.2 137 41-180 5-162 (204)
108 TIGR03864 PQQ_ABC_ATP ABC tran 99.4 3.7E-13 8.1E-18 136.6 8.3 137 41-180 5-165 (236)
109 PRK10895 lipopolysaccharide AB 99.4 4.1E-13 8.9E-18 136.5 8.6 157 40-206 6-189 (241)
110 PRK11308 dppF dipeptide transp 99.4 3.2E-13 7E-18 144.6 8.2 145 33-180 5-187 (327)
111 cd03292 ABC_FtsE_transporter F 99.4 2.9E-13 6.3E-18 134.8 7.2 137 41-180 4-169 (214)
112 PRK11248 tauB taurine transpor 99.4 3.5E-13 7.5E-18 139.1 7.9 156 41-206 5-181 (255)
113 PRK10584 putative ABC transpor 99.4 4.1E-13 8.9E-18 135.3 8.2 150 41-200 10-192 (228)
114 PRK13646 cbiO cobalt transport 99.4 2.4E-13 5.3E-18 142.4 6.8 147 50-207 20-199 (286)
115 PRK11831 putative ABC transpor 99.4 3.8E-13 8.2E-18 139.6 8.1 138 40-180 10-176 (269)
116 COG4525 TauB ABC-type taurine 99.4 1.5E-13 3.3E-18 136.2 4.7 138 40-180 6-165 (259)
117 PRK11264 putative amino-acid A 99.4 3.5E-13 7.6E-18 137.6 7.6 138 40-180 6-177 (250)
118 cd03295 ABC_OpuCA_Osmoprotecti 99.4 4.4E-13 9.5E-18 136.6 8.3 156 41-206 4-188 (242)
119 TIGR03410 urea_trans_UrtE urea 99.4 3.6E-13 7.8E-18 135.9 7.5 137 41-180 4-164 (230)
120 PRK13543 cytochrome c biogenes 99.4 4.8E-13 1E-17 134.1 8.2 138 40-180 14-170 (214)
121 cd03257 ABC_NikE_OppD_transpor 99.4 3.9E-13 8.5E-18 134.9 7.5 127 51-180 19-178 (228)
122 cd03232 ABC_PDR_domain2 The pl 99.4 5.2E-13 1.1E-17 131.8 8.2 116 50-180 20-141 (192)
123 cd03263 ABC_subfamily_A The AB 99.4 3.7E-13 7.9E-18 134.8 7.1 136 42-180 5-166 (220)
124 cd03294 ABC_Pro_Gly_Bertaine T 99.4 3.1E-13 6.7E-18 140.4 6.6 138 40-180 27-193 (269)
125 PRK11247 ssuB aliphatic sulfon 99.4 4.1E-13 8.9E-18 139.0 7.4 138 40-180 15-166 (257)
126 cd03215 ABC_Carb_Monos_II This 99.4 7.4E-13 1.6E-17 129.6 8.7 129 52-205 15-155 (182)
127 cd03235 ABC_Metallic_Cations A 99.4 3.5E-13 7.5E-18 134.5 6.4 136 42-180 4-165 (213)
128 cd03233 ABC_PDR_domain1 The pl 99.4 6.3E-13 1.4E-17 132.4 8.1 124 48-180 18-151 (202)
129 COG1123 ATPase components of v 99.4 4E-13 8.7E-18 150.7 7.3 145 33-180 280-462 (539)
130 PRK14242 phosphate transporter 99.4 5.4E-13 1.2E-17 136.6 7.7 136 41-180 10-182 (253)
131 PRK13651 cobalt transporter AT 99.4 3.1E-13 6.7E-18 143.4 6.0 147 51-207 21-218 (305)
132 cd03231 ABC_CcmA_heme_exporter 99.4 6E-13 1.3E-17 132.2 7.7 137 41-180 4-158 (201)
133 PRK14272 phosphate ABC transpo 99.4 6.7E-13 1.5E-17 135.7 8.3 140 38-180 5-181 (252)
134 PRK11144 modC molybdate transp 99.4 5.5E-13 1.2E-17 144.0 8.0 134 42-180 5-161 (352)
135 PRK15439 autoinducer 2 ABC tra 99.4 5.2E-13 1.1E-17 150.6 8.0 159 39-207 13-193 (510)
136 TIGR01978 sufC FeS assembly AT 99.4 6.3E-13 1.4E-17 134.9 7.6 156 41-206 4-196 (243)
137 PRK11300 livG leucine/isoleuci 99.4 8.5E-13 1.9E-17 135.2 8.6 157 40-206 8-206 (255)
138 PRK13634 cbiO cobalt transport 99.4 4.8E-13 1E-17 140.6 6.9 147 50-207 20-199 (290)
139 PRK14250 phosphate ABC transpo 99.4 6.9E-13 1.5E-17 135.3 7.8 137 40-180 6-164 (241)
140 PRK10247 putative ABC transpor 99.4 6.7E-13 1.5E-17 134.1 7.6 136 41-180 11-170 (225)
141 PRK14268 phosphate ABC transpo 99.4 5.7E-13 1.2E-17 137.3 7.2 137 40-180 15-187 (258)
142 TIGR03411 urea_trans_UrtD urea 99.4 1E-12 2.2E-17 133.7 8.4 137 41-180 6-176 (242)
143 cd03213 ABCG_EPDR ABCG transpo 99.4 7.5E-13 1.6E-17 131.1 7.2 116 50-180 22-144 (194)
144 PRK14239 phosphate transporter 99.4 6.3E-13 1.4E-17 135.9 6.7 137 40-180 8-181 (252)
145 PRK09700 D-allose transporter 99.4 8.5E-13 1.8E-17 148.6 8.2 158 40-207 8-198 (510)
146 PRK13635 cbiO cobalt transport 99.4 6.7E-13 1.4E-17 138.8 6.7 158 40-207 8-194 (279)
147 PRK13637 cbiO cobalt transport 99.4 9.4E-13 2E-17 138.2 7.8 148 50-207 20-198 (287)
148 cd03247 ABCC_cytochrome_bd The 99.4 5.4E-13 1.2E-17 130.0 5.5 109 51-180 16-131 (178)
149 TIGR00972 3a0107s01c2 phosphat 99.4 1.2E-12 2.6E-17 133.7 8.3 136 41-180 5-177 (247)
150 TIGR03740 galliderm_ABC gallid 99.4 1.1E-12 2.4E-17 131.9 7.8 156 41-206 4-176 (223)
151 PRK13548 hmuV hemin importer A 99.4 1.2E-12 2.7E-17 135.0 8.3 137 41-180 6-173 (258)
152 PRK13652 cbiO cobalt transport 99.4 1.2E-12 2.5E-17 136.6 8.1 157 41-207 7-191 (277)
153 PRK14270 phosphate ABC transpo 99.4 1E-12 2.2E-17 134.5 7.6 137 40-180 7-180 (251)
154 PRK13650 cbiO cobalt transport 99.4 8.7E-13 1.9E-17 137.8 7.2 148 50-207 20-194 (279)
155 PRK10575 iron-hydroxamate tran 99.4 1.2E-12 2.6E-17 135.4 8.1 138 40-180 14-180 (265)
156 PRK14267 phosphate ABC transpo 99.4 1.4E-12 3E-17 133.6 8.4 139 39-180 6-182 (253)
157 PRK11022 dppD dipeptide transp 99.4 8.6E-13 1.9E-17 141.2 7.2 128 50-180 20-186 (326)
158 PRK10762 D-ribose transporter 99.4 9.8E-13 2.1E-17 147.9 8.0 158 40-207 7-194 (501)
159 PRK10070 glycine betaine trans 99.4 6.7E-13 1.5E-17 145.8 6.4 131 47-180 38-197 (400)
160 COG0444 DppD ABC-type dipeptid 99.4 1.1E-12 2.4E-17 138.5 7.8 202 35-272 3-245 (316)
161 PRK13631 cbiO cobalt transport 99.4 1E-12 2.2E-17 140.4 7.6 157 40-207 24-229 (320)
162 PRK09984 phosphonate/organopho 99.4 1.2E-12 2.6E-17 135.0 8.0 157 40-206 7-205 (262)
163 TIGR03005 ectoine_ehuA ectoine 99.4 1.2E-12 2.6E-17 134.2 7.8 137 41-180 4-179 (252)
164 COG4598 HisP ABC-type histidin 99.4 6E-13 1.3E-17 130.4 5.3 165 40-214 9-212 (256)
165 TIGR03873 F420-0_ABC_ATP propo 99.4 1.4E-12 3.1E-17 134.0 8.4 137 41-180 5-170 (256)
166 cd03217 ABC_FeS_Assembly ABC-t 99.4 1.2E-12 2.6E-17 130.1 7.5 141 42-206 5-156 (200)
167 PRK14273 phosphate ABC transpo 99.4 8.2E-13 1.8E-17 135.5 6.5 136 41-180 11-183 (254)
168 PRK15093 antimicrobial peptide 99.4 1.2E-12 2.6E-17 140.2 7.9 130 48-180 18-191 (330)
169 cd02022 DPCK Dephospho-coenzym 99.4 1.4E-12 3E-17 127.6 7.7 161 68-244 1-178 (179)
170 PRK13647 cbiO cobalt transport 99.3 1.1E-12 2.3E-17 136.8 7.2 157 41-207 8-191 (274)
171 PRK13641 cbiO cobalt transport 99.3 1E-12 2.2E-17 137.8 7.1 157 40-207 5-198 (287)
172 cd03228 ABCC_MRP_Like The MRP 99.3 9.1E-13 2E-17 127.7 6.3 115 42-180 5-129 (171)
173 TIGR03415 ABC_choXWV_ATP choli 99.3 7.2E-13 1.6E-17 144.7 6.0 133 45-180 32-197 (382)
174 PRK14274 phosphate ABC transpo 99.3 1.4E-12 3E-17 134.3 7.6 138 39-180 14-188 (259)
175 PRK13643 cbiO cobalt transport 99.3 1E-12 2.2E-17 138.0 6.7 146 51-207 20-197 (288)
176 PRK14240 phosphate transporter 99.3 1.5E-12 3.2E-17 133.2 7.6 136 41-180 7-179 (250)
177 COG4181 Predicted ABC-type tra 99.3 6.8E-13 1.5E-17 129.2 4.8 145 33-180 6-179 (228)
178 PRK11231 fecE iron-dicitrate t 99.3 1.2E-12 2.7E-17 134.4 6.9 138 40-180 5-171 (255)
179 PRK14244 phosphate ABC transpo 99.3 1.4E-12 3.1E-17 133.5 7.3 142 35-180 3-182 (251)
180 cd03264 ABC_drug_resistance_li 99.3 1.4E-12 3E-17 130.0 7.0 136 41-180 4-163 (211)
181 TIGR01166 cbiO cobalt transpor 99.3 9.7E-13 2.1E-17 129.2 5.7 128 49-180 4-160 (190)
182 PRK13636 cbiO cobalt transport 99.3 1.4E-12 3.1E-17 136.5 7.1 158 40-207 8-195 (283)
183 PRK10744 pstB phosphate transp 99.3 1.3E-12 2.7E-17 134.9 6.5 136 41-180 17-189 (260)
184 PRK10261 glutathione transport 99.3 1.6E-12 3.5E-17 150.1 8.0 149 49-207 28-222 (623)
185 PF01928 CYTH: CYTH domain; I 99.3 1.2E-11 2.6E-16 120.7 12.8 131 275-409 30-183 (185)
186 PRK13549 xylose transporter AT 99.3 1.8E-12 3.9E-17 145.9 8.0 158 40-207 8-196 (506)
187 PRK13649 cbiO cobalt transport 99.3 1.6E-12 3.5E-17 135.4 7.0 127 50-180 20-178 (280)
188 TIGR02324 CP_lyasePhnL phospho 99.3 2.4E-12 5.3E-17 129.3 8.0 147 50-206 21-201 (224)
189 PRK10253 iron-enterobactin tra 99.3 2.3E-12 4.9E-17 133.4 8.0 138 40-180 10-176 (265)
190 PRK13639 cbiO cobalt transport 99.3 1.6E-12 3.4E-17 135.5 6.8 156 41-207 5-190 (275)
191 PRK14235 phosphate transporter 99.3 3.3E-12 7.2E-17 132.5 9.2 139 38-180 20-196 (267)
192 PRK14255 phosphate ABC transpo 99.3 2.8E-12 6E-17 131.3 8.5 137 40-180 8-181 (252)
193 TIGR02142 modC_ABC molybdenum 99.3 2.4E-12 5.3E-17 139.1 8.4 133 43-180 5-164 (354)
194 COG2274 SunT ABC-type bacterio 99.3 6.3E-13 1.4E-17 154.8 4.0 136 41-180 475-642 (709)
195 cd03260 ABC_PstB_phosphate_tra 99.3 2.2E-12 4.7E-17 130.0 7.3 136 41-180 4-174 (227)
196 PRK13644 cbiO cobalt transport 99.3 1.7E-12 3.7E-17 135.3 6.7 157 41-207 5-189 (274)
197 cd03300 ABC_PotA_N PotA is an 99.3 2.9E-12 6.3E-17 129.9 7.9 156 41-206 4-183 (232)
198 PRK14262 phosphate ABC transpo 99.3 2.7E-12 5.9E-17 131.2 7.7 137 40-180 6-179 (250)
199 TIGR02769 nickel_nikE nickel i 99.3 2.6E-12 5.7E-17 132.9 7.7 129 49-180 23-183 (265)
200 COG4608 AppF ABC-type oligopep 99.3 5E-12 1.1E-16 131.0 9.5 133 33-180 4-142 (268)
201 PRK10982 galactose/methyl gala 99.3 2.3E-12 4.9E-17 144.5 7.6 156 42-207 3-187 (491)
202 PRK11288 araG L-arabinose tran 99.3 2.4E-12 5.3E-17 144.7 7.8 157 41-207 8-193 (501)
203 PRK14248 phosphate ABC transpo 99.3 3.7E-12 8.1E-17 131.9 8.5 137 40-180 24-197 (268)
204 TIGR00968 3a0106s01 sulfate AB 99.3 3.2E-12 6.8E-17 130.2 7.8 137 41-180 4-163 (237)
205 PRK11701 phnK phosphonate C-P 99.3 3.2E-12 7E-17 131.6 7.9 139 39-180 8-184 (258)
206 PRK13648 cbiO cobalt transport 99.3 2.2E-12 4.8E-17 133.8 6.8 151 41-201 11-189 (269)
207 PRK13541 cytochrome c biogenes 99.3 4.1E-12 8.9E-17 125.5 8.4 136 41-180 5-156 (195)
208 PRK13640 cbiO cobalt transport 99.3 1.7E-12 3.7E-17 135.9 5.9 138 40-180 8-176 (282)
209 PRK13638 cbiO cobalt transport 99.3 1.9E-12 4.2E-17 134.4 6.0 137 41-180 5-169 (271)
210 cd03223 ABCD_peroxisomal_ALDP 99.3 3.3E-12 7.2E-17 123.5 7.2 118 42-180 5-124 (166)
211 PRK10261 glutathione transport 99.3 3E-12 6.4E-17 147.9 7.9 147 50-206 337-516 (623)
212 PRK14261 phosphate ABC transpo 99.3 5.1E-12 1.1E-16 129.6 8.8 137 40-180 9-182 (253)
213 PRK14275 phosphate ABC transpo 99.3 6E-12 1.3E-16 132.0 9.5 137 40-180 42-215 (286)
214 PRK09544 znuC high-affinity zi 99.3 4.1E-12 8.8E-17 131.0 8.0 134 40-180 7-153 (251)
215 PRK13633 cobalt transporter AT 99.3 4E-12 8.8E-17 132.8 8.1 148 50-207 23-198 (280)
216 PRK14241 phosphate transporter 99.3 4.6E-12 1E-16 130.4 8.4 138 40-180 7-181 (258)
217 PRK13632 cbiO cobalt transport 99.3 2.7E-12 5.9E-17 133.3 6.7 138 40-180 10-175 (271)
218 cd03251 ABCC_MsbA MsbA is an e 99.3 3.1E-12 6.7E-17 129.3 6.9 126 51-180 16-171 (234)
219 PRK13642 cbiO cobalt transport 99.3 2.6E-12 5.6E-17 134.0 6.5 138 40-180 7-173 (277)
220 cd07762 CYTH-like_Pase_1 Uncha 99.3 3.6E-11 7.8E-16 118.7 14.2 121 277-401 26-172 (180)
221 PRK14259 phosphate ABC transpo 99.3 4.7E-12 1E-16 131.6 8.3 137 40-180 16-187 (269)
222 PRK14269 phosphate ABC transpo 99.3 3.7E-12 7.9E-17 130.3 7.3 136 41-180 6-175 (246)
223 PRK10938 putative molybdenum t 99.3 4.4E-12 9.5E-17 142.1 8.6 137 39-180 5-168 (490)
224 cd03297 ABC_ModC_molybdenum_tr 99.3 3.3E-12 7.1E-17 127.7 6.8 147 42-201 5-178 (214)
225 TIGR02633 xylG D-xylose ABC tr 99.3 3.9E-12 8.5E-17 142.8 8.1 157 41-207 5-194 (500)
226 PRK14256 phosphate ABC transpo 99.3 6E-12 1.3E-16 129.0 8.8 137 41-180 8-181 (252)
227 cd03298 ABC_ThiQ_thiamine_tran 99.3 4.7E-12 1E-16 126.1 7.7 134 42-180 5-161 (211)
228 COG1132 MdlB ABC-type multidru 99.3 1.3E-12 2.9E-17 148.7 4.1 138 39-180 330-498 (567)
229 COG4618 ArpD ABC-type protease 99.3 2.9E-12 6.2E-17 141.3 6.5 187 10-207 307-525 (580)
230 PRK14249 phosphate ABC transpo 99.3 6.1E-12 1.3E-16 128.9 8.3 136 41-180 8-180 (251)
231 COG4604 CeuD ABC-type enteroch 99.3 4.1E-12 8.8E-17 126.3 6.6 165 41-214 5-196 (252)
232 PRK11819 putative ABC transpor 99.3 4.6E-12 9.9E-17 144.4 8.0 136 38-180 7-196 (556)
233 PRK14245 phosphate ABC transpo 99.3 5.8E-12 1.3E-16 128.9 8.0 136 41-180 7-179 (250)
234 COG1129 MglA ABC-type sugar tr 99.3 2.3E-12 5.1E-17 143.6 5.4 165 40-214 11-205 (500)
235 cd03254 ABCC_Glucan_exporter_l 99.3 3.5E-12 7.5E-17 128.5 6.2 136 41-180 6-172 (229)
236 cd03252 ABCC_Hemolysin The ABC 99.3 3.7E-12 8E-17 129.1 6.3 127 50-180 15-171 (237)
237 COG4172 ABC-type uncharacteriz 99.3 4.9E-12 1.1E-16 136.4 7.4 191 49-275 299-521 (534)
238 CHL00131 ycf16 sulfate ABC tra 99.3 6.4E-12 1.4E-16 128.5 7.7 158 40-207 10-204 (252)
239 PRK14253 phosphate ABC transpo 99.3 7E-12 1.5E-16 128.2 7.9 136 41-180 7-178 (249)
240 PRK15134 microcin C ABC transp 99.3 2.8E-12 6E-17 145.1 5.5 128 50-180 299-458 (529)
241 COG4559 ABC-type hemin transpo 99.3 8.1E-12 1.7E-16 125.4 8.0 158 40-207 4-194 (259)
242 TIGR02982 heterocyst_DevA ABC 99.3 7E-12 1.5E-16 126.0 7.6 128 50-180 18-174 (220)
243 PRK14732 coaE dephospho-CoA ki 99.3 6E-12 1.3E-16 125.7 7.1 160 68-243 1-177 (196)
244 PRK14236 phosphate transporter 99.3 1.2E-11 2.5E-16 128.7 9.5 137 40-180 28-201 (272)
245 KOG0058 Peptide exporter, ABC 99.3 1.9E-12 4.2E-17 147.7 3.9 204 8-237 434-673 (716)
246 PRK14251 phosphate ABC transpo 99.3 8.1E-12 1.7E-16 127.8 8.1 137 40-180 7-180 (251)
247 PRK10771 thiQ thiamine transpo 99.3 5.9E-12 1.3E-16 127.5 7.0 135 41-180 5-162 (232)
248 TIGR01277 thiQ thiamine ABC tr 99.3 7.9E-12 1.7E-16 125.0 7.6 126 52-180 13-161 (213)
249 PRK14237 phosphate transporter 99.3 9.4E-12 2E-16 129.1 8.4 138 39-180 22-196 (267)
250 PRK15112 antimicrobial peptide 99.3 6E-12 1.3E-16 130.5 6.9 128 50-180 26-182 (267)
251 cd03267 ABC_NatA_like Similar 99.3 6.5E-12 1.4E-16 127.9 7.0 133 45-180 29-186 (236)
252 PRK10419 nikE nickel transport 99.3 7.5E-12 1.6E-16 130.0 7.6 129 49-180 24-184 (268)
253 cd03216 ABC_Carb_Monos_I This 99.3 6.6E-12 1.4E-16 121.1 6.7 103 41-180 4-115 (163)
254 TIGR03269 met_CoM_red_A2 methy 99.3 5.4E-12 1.2E-16 142.4 7.0 148 49-206 296-480 (520)
255 cd03250 ABCC_MRP_domain1 Domai 99.3 3.1E-12 6.8E-17 126.9 4.5 120 51-180 19-160 (204)
256 COG4619 ABC-type uncharacteriz 99.3 1.6E-12 3.4E-17 126.4 2.1 135 42-180 8-166 (223)
257 cd03249 ABC_MTABC3_MDL1_MDL2 M 99.3 6.2E-12 1.4E-16 127.5 6.7 127 50-180 16-172 (238)
258 COG4175 ProV ABC-type proline/ 99.3 5.5E-12 1.2E-16 132.6 6.3 130 48-180 39-197 (386)
259 cd03299 ABC_ModC_like Archeal 99.3 8.1E-12 1.8E-16 127.0 7.4 155 42-207 5-183 (235)
260 PRK15134 microcin C ABC transp 99.3 9.9E-12 2.2E-16 140.7 8.9 148 50-207 22-210 (529)
261 PRK14238 phosphate transporter 99.3 8.7E-12 1.9E-16 129.7 7.7 137 40-180 27-200 (271)
262 PRK13547 hmuV hemin importer A 99.3 9.9E-12 2.1E-16 129.8 7.9 137 41-180 5-187 (272)
263 cd03369 ABCC_NFT1 Domain 2 of 99.3 4.4E-12 9.4E-17 126.2 5.0 127 50-180 21-158 (207)
264 PRK14254 phosphate ABC transpo 99.3 1.7E-11 3.6E-16 128.8 9.6 137 40-180 42-213 (285)
265 PRK09700 D-allose transporter 99.3 8.2E-12 1.8E-16 140.7 7.7 147 51-207 277-462 (510)
266 TIGR02868 CydC thiol reductant 99.2 4.8E-12 1E-16 142.9 5.8 137 40-180 337-503 (529)
267 cd03234 ABCG_White The White s 99.2 7.7E-12 1.7E-16 126.2 6.6 128 50-180 20-176 (226)
268 PRK14271 phosphate ABC transpo 99.2 1.2E-11 2.7E-16 129.1 8.2 139 38-180 22-196 (276)
269 TIGR02323 CP_lyasePhnK phospho 99.2 8E-12 1.7E-16 128.0 6.7 138 40-180 6-181 (253)
270 cd03290 ABCC_SUR1_N The SUR do 99.2 8E-12 1.7E-16 125.3 6.5 134 43-180 6-173 (218)
271 PRK15056 manganese/iron transp 99.2 1.4E-11 3E-16 128.2 8.5 158 40-207 9-195 (272)
272 cd03253 ABCC_ATM1_transporter 99.2 9E-12 1.9E-16 126.1 6.9 135 42-180 5-170 (236)
273 cd03245 ABCC_bacteriocin_expor 99.2 4.6E-12 1E-16 126.8 4.8 135 42-180 7-173 (220)
274 PRK13645 cbiO cobalt transport 99.2 8.7E-12 1.9E-16 130.8 6.9 126 51-180 25-183 (289)
275 cd03248 ABCC_TAP TAP, the Tran 99.2 8E-12 1.7E-16 125.8 6.4 127 50-180 27-183 (226)
276 KOG0057 Mitochondrial Fe/S clu 99.2 1.2E-11 2.6E-16 137.5 8.2 136 41-180 355-520 (591)
277 PRK14243 phosphate transporter 99.2 1.6E-11 3.5E-16 127.1 8.6 136 41-180 14-184 (264)
278 PRK15064 ABC transporter ATP-b 99.2 6.5E-12 1.4E-16 142.2 6.0 133 41-180 5-188 (530)
279 TIGR01184 ntrCD nitrate transp 99.2 6.8E-12 1.5E-16 127.3 5.6 145 53-207 1-168 (230)
280 PRK14266 phosphate ABC transpo 99.2 1.8E-11 3.9E-16 125.2 8.7 137 40-180 6-179 (250)
281 PRK14265 phosphate ABC transpo 99.2 1.5E-11 3.2E-16 128.3 7.9 137 40-180 23-194 (274)
282 cd03289 ABCC_CFTR2 The CFTR su 99.2 9.9E-12 2.1E-16 130.2 6.4 136 41-180 6-171 (275)
283 TIGR03719 ABC_ABC_ChvD ATP-bin 99.2 1.3E-11 2.7E-16 140.6 7.7 134 40-180 7-194 (552)
284 TIGR03797 NHPM_micro_ABC2 NHPM 99.2 6.6E-12 1.4E-16 146.2 5.4 137 40-180 454-621 (686)
285 PRK11174 cysteine/glutathione 99.2 5.9E-12 1.3E-16 143.9 5.0 136 41-180 353-518 (588)
286 COG1123 ATPase components of v 99.2 4.3E-11 9.3E-16 134.5 11.6 206 33-275 5-249 (539)
287 PRK09580 sufC cysteine desulfu 99.2 1.8E-11 4E-16 124.7 8.0 137 41-180 5-178 (248)
288 PRK14730 coaE dephospho-CoA ki 99.2 1.1E-11 2.5E-16 123.5 6.2 162 67-243 2-181 (195)
289 cd07758 ThTPase Thiamine Triph 99.2 1.3E-10 2.7E-15 116.4 13.5 135 263-400 11-181 (196)
290 cd03214 ABC_Iron-Siderophores_ 99.2 1.1E-11 2.5E-16 121.0 5.8 119 42-180 4-130 (180)
291 TIGR03796 NHPM_micro_ABC1 NHPM 99.2 5.2E-12 1.1E-16 147.5 3.9 137 40-180 480-648 (710)
292 PRK13549 xylose transporter AT 99.2 1.4E-11 3E-16 138.8 7.1 149 49-207 274-458 (506)
293 COG3845 ABC-type uncharacteriz 99.2 9E-12 2E-16 137.2 5.4 167 34-214 5-200 (501)
294 PRK00081 coaE dephospho-CoA ki 99.2 2.6E-11 5.6E-16 120.5 8.1 162 66-243 2-180 (194)
295 PRK14257 phosphate ABC transpo 99.2 1.5E-11 3.1E-16 132.0 6.7 136 41-180 84-258 (329)
296 KOG2702 Predicted panthothenat 99.2 3.1E-11 6.6E-16 122.1 8.5 169 67-237 120-318 (323)
297 PRK10418 nikD nickel transport 99.2 2.2E-11 4.7E-16 125.2 7.4 136 41-180 8-173 (254)
298 PRK14260 phosphate ABC transpo 99.2 2.9E-11 6.3E-16 124.7 8.2 137 40-180 10-183 (259)
299 PF01121 CoaE: Dephospho-CoA k 99.2 1.3E-11 2.7E-16 122.0 5.2 160 67-242 1-177 (180)
300 PRK14263 phosphate ABC transpo 99.2 3.2E-11 6.8E-16 125.0 8.1 139 38-180 9-182 (261)
301 cd03244 ABCC_MRP_domain2 Domai 99.2 1.6E-11 3.4E-16 123.1 5.5 127 50-180 17-172 (221)
302 TIGR03269 met_CoM_red_A2 methy 99.2 2.3E-11 5.1E-16 137.3 7.6 137 41-180 4-201 (520)
303 PRK14258 phosphate ABC transpo 99.2 2.9E-11 6.2E-16 125.0 7.5 137 40-180 10-183 (261)
304 PRK14264 phosphate ABC transpo 99.2 3.7E-11 8E-16 127.3 8.4 137 40-180 48-233 (305)
305 PRK03695 vitamin B12-transport 99.2 2.2E-11 4.7E-16 125.1 6.4 126 52-180 11-166 (248)
306 cd03220 ABC_KpsT_Wzt ABC_KpsT_ 99.2 2.4E-11 5.3E-16 122.9 6.6 134 39-180 24-175 (224)
307 TIGR02770 nickel_nikD nickel i 99.2 1.4E-11 3E-16 124.8 4.7 126 52-180 1-158 (230)
308 PRK13477 bifunctional pantoate 99.2 8.6E-11 1.9E-15 132.5 11.2 185 46-239 268-485 (512)
309 COG3840 ThiQ ABC-type thiamine 99.2 1.4E-11 3E-16 121.2 4.3 133 43-180 7-162 (231)
310 TIGR00958 3a01208 Conjugate Tr 99.2 1E-11 2.3E-16 145.4 4.0 137 40-180 481-650 (711)
311 TIGR01257 rim_protein retinal- 99.2 2.6E-11 5.6E-16 153.7 7.6 156 41-206 1941-2122(2272)
312 TIGR02633 xylG D-xylose ABC tr 99.2 2.3E-11 5.1E-16 136.6 6.5 149 49-207 272-456 (500)
313 PLN03211 ABC transporter G-25; 99.2 3.3E-11 7.2E-16 140.1 7.9 155 45-209 76-261 (659)
314 PRK11160 cysteine/glutathione 99.2 1.2E-11 2.6E-16 141.5 3.9 137 40-180 341-508 (574)
315 PRK14252 phosphate ABC transpo 99.2 5.7E-11 1.2E-15 122.9 8.4 137 40-180 19-194 (265)
316 PRK14246 phosphate ABC transpo 99.2 4.5E-11 9.6E-16 123.6 7.4 138 40-180 13-186 (257)
317 PRK14733 coaE dephospho-CoA ki 99.2 6E-11 1.3E-15 119.5 8.0 162 65-243 5-185 (204)
318 COG0396 sufC Cysteine desulfur 99.2 1.5E-11 3.2E-16 124.7 3.6 158 40-207 6-197 (251)
319 PRK14734 coaE dephospho-CoA ki 99.2 9.9E-11 2.1E-15 117.2 9.5 163 67-243 2-181 (200)
320 cd03222 ABC_RNaseL_inhibitor T 99.2 3.9E-11 8.3E-16 118.2 6.5 100 41-180 4-104 (177)
321 TIGR02857 CydD thiol reductant 99.2 1.9E-11 4E-16 138.1 4.8 137 40-180 323-491 (529)
322 TIGR01842 type_I_sec_PrtD type 99.2 2.3E-11 5E-16 138.0 5.6 136 41-180 320-487 (544)
323 PRK14731 coaE dephospho-CoA ki 99.2 4.8E-11 1E-15 119.9 7.1 166 64-243 3-189 (208)
324 PRK15064 ABC transporter ATP-b 99.2 3.3E-11 7.1E-16 136.5 6.4 136 38-180 320-471 (530)
325 cd03288 ABCC_SUR2 The SUR doma 99.2 4.1E-11 8.9E-16 123.5 6.5 136 41-180 23-189 (257)
326 KOG0055 Multidrug/pheromone ex 99.2 1.4E-11 3.1E-16 147.6 3.4 172 41-237 354-558 (1228)
327 PRK10762 D-ribose transporter 99.1 4.9E-11 1.1E-15 134.2 7.5 147 51-207 266-448 (501)
328 PRK11288 araG L-arabinose tran 99.1 4.2E-11 9.2E-16 134.7 6.7 147 51-207 267-449 (501)
329 COG4988 CydD ABC-type transpor 99.1 3.6E-11 7.9E-16 134.9 5.9 136 41-180 324-489 (559)
330 PTZ00265 multidrug resistance 99.1 2.1E-11 4.6E-16 152.3 4.5 164 40-214 1168-1419(1466)
331 PRK10789 putative multidrug tr 99.1 2.5E-11 5.5E-16 138.6 4.8 128 49-180 327-484 (569)
332 PRK10790 putative multidrug tr 99.1 3.7E-11 8.1E-16 137.5 5.9 136 41-180 344-509 (592)
333 cd03221 ABCF_EF-3 ABCF_EF-3 E 99.1 5.9E-11 1.3E-15 112.5 6.2 98 42-180 5-103 (144)
334 PRK15439 autoinducer 2 ABC tra 99.1 5.9E-11 1.3E-15 133.9 7.2 145 52-206 278-455 (510)
335 TIGR01193 bacteriocin_ABC ABC- 99.1 3.3E-11 7.1E-16 140.9 5.2 136 41-180 477-644 (708)
336 PRK11176 lipid transporter ATP 99.1 3.7E-11 7.9E-16 137.1 5.1 137 40-180 344-513 (582)
337 TIGR03719 ABC_ABC_ChvD ATP-bin 99.1 7.3E-11 1.6E-15 134.5 7.2 136 38-180 323-476 (552)
338 PRK11819 putative ABC transpor 99.1 8.5E-11 1.9E-15 134.1 7.7 136 38-180 325-478 (556)
339 PRK10535 macrolide transporter 99.1 1.1E-10 2.4E-15 135.5 8.7 149 49-207 20-197 (648)
340 PRK10522 multidrug transporter 99.1 8E-11 1.7E-15 133.9 7.3 137 40-180 325-482 (547)
341 PRK13546 teichoic acids export 99.1 1.3E-10 2.8E-15 121.0 8.3 144 48-207 35-196 (264)
342 PRK11147 ABC transporter ATPas 99.1 7.8E-11 1.7E-15 136.5 7.3 136 38-180 320-473 (635)
343 COG4674 Uncharacterized ABC-ty 99.1 1.8E-10 3.9E-15 114.5 8.4 139 37-178 5-178 (249)
344 TIGR03375 type_I_sec_LssB type 99.1 6.6E-11 1.4E-15 138.1 6.3 137 40-180 466-634 (694)
345 TIGR02204 MsbA_rel ABC transpo 99.1 4.1E-11 8.9E-16 136.4 4.4 137 40-180 340-509 (576)
346 PRK03333 coaE dephospho-CoA ki 99.1 1.1E-10 2.3E-15 128.3 7.4 257 67-348 2-288 (395)
347 PRK13657 cyclic beta-1,2-gluca 99.1 6.2E-11 1.3E-15 135.7 5.7 137 40-180 337-504 (588)
348 COG4133 CcmA ABC-type transpor 99.1 9.5E-11 2.1E-15 115.8 6.1 140 38-180 3-163 (209)
349 KOG0055 Multidrug/pheromone ex 99.1 5.8E-11 1.2E-15 142.4 5.3 136 41-180 991-1159(1228)
350 TIGR02203 MsbA_lipidA lipid A 99.1 6E-11 1.3E-15 134.8 5.1 137 40-180 333-502 (571)
351 KOG3308 Uncharacterized protei 99.1 9.2E-11 2E-15 116.7 5.6 169 65-239 3-186 (225)
352 PRK13409 putative ATPase RIL; 99.1 1.7E-10 3.6E-15 132.8 8.2 151 40-207 343-507 (590)
353 PRK10982 galactose/methyl gala 99.1 1.5E-10 3.4E-15 129.8 7.8 147 51-207 262-444 (491)
354 TIGR01257 rim_protein retinal- 99.1 1.2E-10 2.7E-15 147.6 7.5 157 40-207 931-1113(2272)
355 COG4148 ModC ABC-type molybdat 99.1 3.5E-11 7.5E-16 124.9 2.1 123 55-180 16-161 (352)
356 PRK10938 putative molybdenum t 99.1 1.2E-10 2.5E-15 130.7 6.3 139 39-180 262-434 (490)
357 COG4136 ABC-type uncharacteriz 99.1 3.8E-11 8.2E-16 115.1 1.9 138 40-180 5-167 (213)
358 cd03237 ABC_RNaseL_inhibitor_d 99.1 1.2E-10 2.5E-15 120.1 5.6 119 54-180 16-148 (246)
359 cd00267 ABC_ATPase ABC (ATP-bi 99.1 1.9E-10 4.2E-15 109.6 6.6 101 43-180 5-113 (157)
360 COG4167 SapF ABC-type antimicr 99.1 1.3E-10 2.7E-15 114.6 5.3 132 46-180 22-182 (267)
361 PTZ00451 dephospho-CoA kinase; 99.1 2.4E-10 5.1E-15 118.1 7.7 168 66-244 1-195 (244)
362 PRK10636 putative ABC transpor 99.1 9.7E-11 2.1E-15 135.8 5.3 138 40-180 4-182 (638)
363 PTZ00265 multidrug resistance 99.1 1.2E-10 2.5E-15 145.8 6.1 163 40-213 385-639 (1466)
364 COG0488 Uup ATPase components 99.1 2.2E-10 4.8E-15 129.9 7.7 136 38-180 4-186 (530)
365 TIGR01192 chvA glucan exporter 99.1 1.2E-10 2.6E-15 133.7 5.5 137 40-180 337-504 (585)
366 COG1134 TagH ABC-type polysacc 99.1 1.8E-10 3.9E-15 117.8 6.1 162 46-217 36-241 (249)
367 PLN02422 dephospho-CoA kinase 99.1 2.4E-10 5.1E-15 117.2 6.9 164 67-244 2-182 (232)
368 PRK10636 putative ABC transpor 99.1 2.1E-10 4.6E-15 133.0 7.3 136 38-180 313-463 (638)
369 COG4987 CydC ABC-type transpor 99.0 6.8E-11 1.5E-15 131.4 2.9 169 8-180 306-507 (573)
370 TIGR01194 cyc_pep_trnsptr cycl 99.0 2.1E-10 4.5E-15 130.8 6.8 135 41-180 341-503 (555)
371 COG4172 ABC-type uncharacteriz 99.0 1.3E-09 2.8E-14 118.0 12.0 146 33-181 6-191 (534)
372 PF00005 ABC_tran: ABC transpo 99.0 4.2E-11 9E-16 110.7 0.5 71 53-126 1-79 (137)
373 TIGR01846 type_I_sec_HlyB type 99.0 2.8E-10 6.1E-15 132.9 7.5 136 41-180 459-626 (694)
374 PRK15177 Vi polysaccharide exp 99.0 1.4E-10 3.1E-15 116.6 4.3 120 52-180 2-137 (213)
375 cd02020 CMPK Cytidine monophos 99.0 2E-09 4.3E-14 100.0 11.5 143 68-238 1-145 (147)
376 KOG0056 Heavy metal exporter H 99.0 1.3E-10 2.7E-15 127.6 3.8 160 17-180 514-707 (790)
377 cd03236 ABC_RNaseL_inhibitor_d 99.0 1.9E-10 4.1E-15 119.3 4.9 134 42-180 5-172 (255)
378 TIGR00152 dephospho-CoA kinase 99.0 2.4E-10 5.2E-15 112.4 5.3 163 68-244 1-180 (188)
379 PLN03130 ABC transporter C fam 99.0 1.4E-10 2.9E-15 146.4 4.4 136 41-180 1241-1407(1622)
380 PLN03232 ABC transporter C fam 99.0 9.9E-11 2.1E-15 147.0 3.0 136 41-180 1238-1404(1495)
381 COG4161 ArtP ABC-type arginine 99.0 5.6E-10 1.2E-14 108.2 7.4 156 41-206 6-193 (242)
382 PRK13545 tagH teichoic acids e 99.0 3.9E-10 8.5E-15 127.2 7.4 151 41-207 25-196 (549)
383 TIGR03771 anch_rpt_ABC anchore 99.0 3E-10 6.5E-15 114.8 5.8 140 58-207 1-166 (223)
384 cd03291 ABCC_CFTR1 The CFTR su 99.0 1.8E-10 3.8E-15 121.3 4.2 128 41-180 43-192 (282)
385 TIGR00956 3a01205 Pleiotropic 99.0 7.2E-10 1.6E-14 138.4 9.2 155 48-212 774-960 (1394)
386 PTZ00243 ABC transporter; Prov 99.0 2.2E-10 4.7E-15 144.3 4.6 136 41-180 1312-1479(1560)
387 TIGR00955 3a01204 The Eye Pigm 99.0 5E-10 1.1E-14 129.5 7.2 151 47-207 35-219 (617)
388 COG4778 PhnL ABC-type phosphon 99.0 1.8E-09 3.8E-14 105.6 9.6 163 35-207 6-205 (235)
389 TIGR00954 3a01203 Peroxysomal 99.0 5.5E-10 1.2E-14 130.1 7.0 133 40-180 454-615 (659)
390 TIGR00957 MRP_assoc_pro multi 99.0 1.9E-10 4.1E-15 144.7 3.3 136 41-180 1288-1454(1522)
391 PRK11147 ABC transporter ATPas 98.9 1.1E-09 2.4E-14 127.0 7.9 135 40-180 6-189 (635)
392 cd03238 ABC_UvrA The excision 98.9 6.6E-10 1.4E-14 109.4 5.0 132 49-207 7-142 (176)
393 TIGR01187 potA spermidine/putr 98.9 4.3E-10 9.4E-15 120.3 3.3 110 71-180 1-133 (325)
394 PRK13409 putative ATPase RIL; 98.9 6.7E-10 1.5E-14 127.8 4.0 161 34-207 66-264 (590)
395 COG4107 PhnK ABC-type phosphon 98.9 1.9E-09 4.2E-14 105.6 5.8 136 43-181 12-185 (258)
396 PLN03140 ABC transporter G fam 98.9 1.8E-09 3.9E-14 135.1 6.4 129 49-180 177-369 (1470)
397 TIGR00017 cmk cytidylate kinas 98.9 6E-09 1.3E-13 105.9 8.5 80 160-240 121-201 (217)
398 PLN03073 ABC transporter F fam 98.9 2.4E-09 5.2E-14 125.7 6.5 133 39-180 510-660 (718)
399 COG1101 PhnK ABC-type uncharac 98.9 1E-09 2.2E-14 110.7 2.9 77 50-129 19-105 (263)
400 TIGR01271 CFTR_protein cystic 98.9 3.8E-09 8.2E-14 132.9 8.2 136 41-180 1221-1386(1490)
401 COG4586 ABC-type uncharacteriz 98.8 1.7E-09 3.8E-14 112.2 3.1 126 46-180 33-189 (325)
402 PLN03140 ABC transporter G fam 98.8 3.5E-09 7.7E-14 132.5 6.4 150 48-207 891-1072(1470)
403 COG4240 Predicted kinase [Gene 98.8 2.7E-08 5.9E-13 101.0 11.3 166 62-229 46-272 (300)
404 COG1119 ModF ABC-type molybden 98.8 6.8E-09 1.5E-13 106.5 6.5 138 35-180 29-204 (257)
405 KOG0061 Transporter, ABC super 98.8 2.6E-09 5.6E-14 123.5 3.7 155 49-213 42-229 (613)
406 TIGR00956 3a01205 Pleiotropic 98.8 3E-09 6.5E-14 132.9 4.5 149 48-206 72-262 (1394)
407 PRK08118 topology modulation p 98.8 9.5E-09 2E-13 100.1 6.6 105 68-207 3-108 (167)
408 COG0237 CoaE Dephospho-CoA kin 98.8 5.3E-09 1.2E-13 105.2 4.9 162 66-244 2-180 (201)
409 KOG3220 Similar to bacterial d 98.8 5.1E-09 1.1E-13 104.4 4.7 165 66-244 1-182 (225)
410 COG0283 Cmk Cytidylate kinase 98.8 2.5E-08 5.3E-13 100.7 9.2 80 160-241 121-202 (222)
411 KOG0059 Lipid exporter ABCA1 a 98.8 8.7E-09 1.9E-13 123.7 6.9 158 38-205 565-749 (885)
412 KOG2878 Predicted kinase [Gene 98.8 7E-08 1.5E-12 96.4 11.8 161 66-227 31-254 (282)
413 PF13207 AAA_17: AAA domain; P 98.8 7.9E-09 1.7E-13 93.5 4.8 114 68-207 1-119 (121)
414 TIGR00957 MRP_assoc_pro multi 98.7 8.2E-09 1.8E-13 130.1 6.3 130 41-180 640-793 (1522)
415 COG5265 ATM1 ABC-type transpor 98.7 7.8E-09 1.7E-13 112.5 5.0 134 43-180 268-432 (497)
416 PRK07261 topology modulation p 98.7 2.1E-08 4.5E-13 97.9 7.5 124 68-226 2-127 (171)
417 COG0488 Uup ATPase components 98.7 8E-09 1.7E-13 117.3 5.1 132 37-180 321-472 (530)
418 PLN03073 ABC transporter F fam 98.7 9.8E-09 2.1E-13 120.7 4.5 138 40-180 180-377 (718)
419 TIGR01271 CFTR_protein cystic 98.7 1.1E-08 2.4E-13 128.7 5.0 121 50-180 439-581 (1490)
420 PLN03130 ABC transporter C fam 98.7 1.9E-08 4.1E-13 127.3 6.5 130 41-180 618-773 (1622)
421 PLN03232 ABC transporter C fam 98.6 2.2E-08 4.8E-13 126.1 5.6 131 41-180 618-773 (1495)
422 KOG0054 Multidrug resistance-a 98.6 1.6E-08 3.5E-13 124.0 3.1 136 41-180 1144-1308(1381)
423 PTZ00243 ABC transporter; Prov 98.6 2.8E-08 6E-13 125.6 4.8 123 48-180 671-815 (1560)
424 PRK09518 bifunctional cytidyla 98.6 3.7E-07 8E-12 107.6 13.7 76 161-241 139-214 (712)
425 PRK06217 hypothetical protein; 98.6 2E-07 4.3E-12 91.5 8.4 103 68-201 3-107 (183)
426 PRK11860 bifunctional 3-phosph 98.5 2.1E-07 4.5E-12 108.7 9.4 168 66-241 442-638 (661)
427 cd07891 CYTH-like_CthTTM-like_ 98.5 4.2E-07 9.1E-12 87.4 9.9 92 282-385 26-120 (148)
428 PRK01184 hypothetical protein; 98.5 1.9E-07 4.2E-12 91.1 7.5 160 66-243 1-165 (184)
429 PRK00023 cmk cytidylate kinase 98.5 1.8E-07 3.8E-12 95.5 6.5 80 160-240 123-203 (225)
430 COG4138 BtuD ABC-type cobalami 98.4 2.4E-07 5.1E-12 91.3 4.9 144 53-207 15-185 (248)
431 PRK06762 hypothetical protein; 98.4 1.7E-06 3.6E-11 83.1 10.8 121 66-215 2-132 (166)
432 COG1102 Cmk Cytidylate kinase 98.4 1.1E-07 2.5E-12 92.2 2.4 145 68-238 2-153 (179)
433 KOG0065 Pleiotropic drug resis 98.4 1.6E-06 3.5E-11 105.3 12.1 160 38-207 792-983 (1391)
434 cd00820 PEPCK_HprK Phosphoenol 98.4 4.7E-07 1E-11 82.6 5.6 69 50-129 2-77 (107)
435 COG3954 PrkB Phosphoribulokina 98.4 1.6E-06 3.4E-11 86.3 9.1 170 66-237 5-205 (289)
436 TIGR02322 phosphon_PhnN phosph 98.3 3E-06 6.6E-11 82.3 10.7 24 68-91 3-26 (179)
437 PRK14737 gmk guanylate kinase; 98.3 2.3E-06 5E-11 85.0 9.4 160 65-243 3-171 (186)
438 TIGR02173 cyt_kin_arch cytidyl 98.3 2.1E-06 4.5E-11 82.0 8.6 147 68-239 2-155 (171)
439 PRK12269 bifunctional cytidyla 98.3 2.1E-06 4.6E-11 102.6 10.4 79 161-242 191-269 (863)
440 PRK04182 cytidylate kinase; Pr 98.3 3.1E-06 6.6E-11 81.4 9.6 147 68-240 2-156 (180)
441 PRK05541 adenylylsulfate kinas 98.3 1.8E-06 3.9E-11 83.9 7.0 36 65-100 6-43 (176)
442 cd02019 NK Nucleoside/nucleoti 98.3 1.9E-06 4.2E-11 71.9 6.1 59 68-186 1-63 (69)
443 KOG0062 ATPase component of AB 98.2 2.9E-07 6.4E-12 102.4 1.3 133 40-180 83-231 (582)
444 TIGR03263 guanyl_kin guanylate 98.2 3.6E-06 7.7E-11 81.6 8.7 24 68-91 3-26 (180)
445 COG4615 PvdE ABC-type sideroph 98.2 2.7E-07 5.8E-12 100.1 0.9 64 53-119 339-410 (546)
446 cd03278 ABC_SMC_barmotin Barmo 98.2 3.2E-07 7E-12 91.6 1.0 115 54-180 14-150 (197)
447 cd03270 ABC_UvrA_I The excisio 98.2 1.4E-06 3E-11 88.7 4.9 34 47-83 5-38 (226)
448 PRK10078 ribose 1,5-bisphospho 98.2 7.4E-06 1.6E-10 80.7 9.2 23 68-90 4-26 (186)
449 cd03272 ABC_SMC3_euk Eukaryoti 98.1 1E-06 2.2E-11 89.6 2.4 34 48-89 13-46 (243)
450 PRK04040 adenylate kinase; Pro 98.1 4.7E-06 1E-10 82.9 7.0 36 66-101 2-38 (188)
451 PRK00300 gmk guanylate kinase; 98.1 1.1E-05 2.4E-10 79.9 9.4 27 62-91 4-30 (205)
452 KOG0054 Multidrug resistance-a 98.1 7.9E-07 1.7E-11 109.5 1.4 129 42-180 525-676 (1381)
453 TIGR01360 aden_kin_iso1 adenyl 98.1 6.4E-06 1.4E-10 79.9 6.9 110 67-198 4-127 (188)
454 PRK08356 hypothetical protein; 98.0 6.3E-06 1.4E-10 81.8 5.3 34 66-101 5-38 (195)
455 KOG0927 Predicted transporter 98.0 2.1E-06 4.5E-11 96.3 1.2 135 41-180 79-254 (614)
456 cd03271 ABC_UvrA_II The excisi 97.9 6.8E-06 1.5E-10 86.0 4.4 34 50-86 8-41 (261)
457 cd03240 ABC_Rad50 The catalyti 97.9 3E-06 6.5E-11 85.1 0.8 111 68-180 24-154 (204)
458 COG4178 ABC-type uncharacteriz 97.9 7.2E-06 1.6E-10 94.1 3.7 124 50-180 406-548 (604)
459 COG4170 SapD ABC-type antimicr 97.9 8.6E-05 1.9E-09 75.4 10.5 88 35-125 5-110 (330)
460 TIGR03238 dnd_assoc_3 dnd syst 97.9 9.3E-06 2E-10 91.0 3.7 49 50-103 19-69 (504)
461 cd03279 ABC_sbcCD SbcCD and ot 97.9 8.1E-06 1.8E-10 82.1 2.9 34 54-90 18-52 (213)
462 KOG0066 eIF2-interacting prote 97.8 1.1E-05 2.3E-10 88.6 3.8 143 40-185 267-452 (807)
463 cd07761 CYTH-like_CthTTM-like 97.8 8.1E-05 1.8E-09 71.4 9.1 89 282-384 26-117 (146)
464 PF13238 AAA_18: AAA domain; P 97.8 6.3E-06 1.4E-10 74.3 1.4 22 69-90 1-22 (129)
465 COG1245 Predicted ATPase, RNas 97.8 1.8E-05 3.9E-10 87.5 5.1 112 59-180 363-488 (591)
466 COG0194 Gmk Guanylate kinase [ 97.8 0.00012 2.5E-09 73.1 9.9 155 67-240 5-167 (191)
467 PRK13949 shikimate kinase; Pro 97.8 1.4E-05 3E-10 78.1 3.3 33 68-101 3-35 (169)
468 KOG0927 Predicted transporter 97.8 1.9E-05 4E-10 88.9 4.6 59 40-101 392-452 (614)
469 PRK05057 aroK shikimate kinase 97.8 3.6E-05 7.9E-10 75.3 6.0 32 68-100 6-37 (172)
470 COG1129 MglA ABC-type sugar tr 97.8 6.3E-05 1.4E-09 84.9 8.3 145 52-206 274-453 (500)
471 PRK03839 putative kinase; Prov 97.7 0.0002 4.3E-09 69.8 9.8 33 68-101 2-34 (180)
472 KOG0060 Long-chain acyl-CoA tr 97.7 4.4E-05 9.6E-10 86.5 5.2 151 49-214 447-627 (659)
473 TIGR01313 therm_gnt_kin carboh 97.7 0.00021 4.5E-09 68.4 9.1 32 69-101 1-32 (163)
474 PRK00131 aroK shikimate kinase 97.6 6.1E-05 1.3E-09 71.8 5.1 34 66-100 4-37 (175)
475 PRK09825 idnK D-gluconate kina 97.6 0.0007 1.5E-08 66.7 12.5 57 68-127 5-67 (176)
476 COG2401 ABC-type ATPase fused 97.6 2.7E-05 5.8E-10 85.4 2.6 40 48-90 394-433 (593)
477 PF00625 Guanylate_kin: Guanyl 97.6 0.00019 4.1E-09 70.5 8.4 26 67-92 3-28 (183)
478 PLN02200 adenylate kinase fami 97.6 7.7E-05 1.7E-09 76.8 5.9 37 64-101 41-77 (234)
479 cd01130 VirB11-like_ATPase Typ 97.6 0.0001 2.2E-09 72.7 6.3 45 54-101 16-61 (186)
480 smart00072 GuKc Guanylate kina 97.6 0.00051 1.1E-08 67.6 10.8 160 67-240 3-167 (184)
481 cd07374 CYTH-like_Pase CYTH-li 97.5 0.00039 8.3E-09 67.8 8.8 100 279-382 33-156 (174)
482 COG1428 Deoxynucleoside kinase 97.5 0.00015 3.3E-09 73.4 5.8 56 177-237 126-185 (216)
483 cd03283 ABC_MutS-like MutS-lik 97.5 3.8E-05 8.2E-10 77.1 1.4 68 51-129 15-82 (199)
484 cd02021 GntK Gluconate kinase 97.4 0.00065 1.4E-08 64.0 9.1 34 68-102 1-34 (150)
485 cd01428 ADK Adenylate kinase ( 97.4 0.00044 9.6E-09 67.5 7.6 32 69-101 2-33 (194)
486 TIGR01359 UMP_CMP_kin_fam UMP- 97.4 0.0003 6.5E-09 68.4 6.3 33 68-101 1-33 (183)
487 cd07756 CYTH-like_Pase_CHAD Un 97.4 0.0013 2.8E-08 66.3 10.9 117 277-393 32-176 (197)
488 PRK00625 shikimate kinase; Pro 97.4 0.0002 4.3E-09 70.6 4.9 33 68-101 2-34 (173)
489 cd03276 ABC_SMC6_euk Eukaryoti 97.4 0.00035 7.6E-09 70.0 6.6 119 53-180 12-146 (198)
490 COG0703 AroK Shikimate kinase 97.4 0.00013 2.8E-09 72.0 3.3 140 68-240 4-152 (172)
491 PRK14530 adenylate kinase; Pro 97.3 0.00032 6.9E-09 70.7 6.0 33 68-101 5-37 (215)
492 KOG0065 Pleiotropic drug resis 97.3 0.00026 5.6E-09 86.7 6.1 129 49-180 127-293 (1391)
493 cd01673 dNK Deoxyribonucleosid 97.3 0.00018 3.9E-09 70.7 3.6 60 176-240 123-184 (193)
494 cd03274 ABC_SMC4_euk Eukaryoti 97.3 0.0003 6.5E-09 71.2 4.7 37 46-90 13-49 (212)
495 KOG0066 eIF2-interacting prote 97.2 0.00027 5.8E-09 78.0 4.2 54 41-97 590-645 (807)
496 PRK07196 fliI flagellum-specif 97.2 0.00057 1.2E-08 76.4 6.4 75 50-128 143-234 (434)
497 PRK12338 hypothetical protein; 97.2 0.00062 1.3E-08 73.3 6.4 27 65-91 3-29 (319)
498 PRK14738 gmk guanylate kinase; 97.2 0.0026 5.7E-08 64.0 10.5 30 61-90 8-37 (206)
499 COG1703 ArgK Putative periplas 97.2 0.00027 5.8E-09 75.0 3.4 143 57-243 42-201 (323)
500 PRK00349 uvrA excinuclease ABC 97.2 0.00067 1.4E-08 82.4 7.0 34 51-87 623-656 (943)
No 1
>PLN02318 phosphoribulokinase/uridine kinase
Probab=100.00 E-value=9.7e-176 Score=1449.17 Aligned_cols=654 Identities=84% Similarity=1.254 Sum_probs=636.5
Q ss_pred CCCCCCCCCCCCCccCccccchhhhhcccCCCceeeeeccceeeeecCceEEEEecceeeccCCcceEEEEECCCCCcHH
Q 006117 1 MAQDTSSGADSPRRRPGLLRDQVQLVKKKDSDRYEIVPIEDTLSFEKGFFIVIRACQLLAQKNHGIILVGVAGPSGAGKT 80 (660)
Q Consensus 1 ~~~~~~~~~~S~~r~~~ll~~~~~l~~~~~~~~~ei~~~~~~ls~~~g~~~vL~~Isl~i~~ge~~~IIGI~GpSGSGKS 80 (660)
||||+ ++++|++|+.+++++|++++++|.++.++|.++.++++|++|++++++++++......++++|||+||||||||
T Consensus 1 ~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~sfd~g~~~~ira~qlL~~~~~~riIIGIaGpSGSGKT 79 (656)
T PLN02318 1 MAQDT-SGAESPRRRHGLLKDQVQLVKRKDSDRYEIVPIQDPLSFEKGFFVVIRACQLLAQKNDGIILVGVAGPSGAGKT 79 (656)
T ss_pred CCccc-ccCcCcccccchhHHhhhheeeccCCceEEEeCCCccccccchhhhhHHHHHHHhcCCCeEEEEEECCCCCcHH
Confidence 99999 88999999999999999999999999999999999999999999999999998887778899999999999999
Q ss_pred HHHHHHHHhCCCceEEEecCcccccccccccCCCCCCCchhhHHHHHHhhhcCcccccccccccccccccceeeecCCcc
Q 006117 81 VFTEKVLNFMPSIAVITMDNYNDSSRIIDGNFDDPRLTDYDTLLENIRGLKEGKAVQVPIYDFKSSSRIGYRTLEVPSSR 160 (660)
Q Consensus 81 TLak~L~~lLp~~g~I~lDg~~~~~~~i~~vfq~p~l~d~~tl~e~L~~L~~Gk~I~~PiyD~s~~~rs~~~~~~v~~a~ 160 (660)
||++.|++.+|.++.|++|+|+......+++||+|.++|++.+.++|..|++|+.+..|.|||..+.+.+.....+++.+
T Consensus 80 TLAk~LaglLp~vgvIsmDdy~~~~~~i~~nfD~P~a~D~d~L~enL~~Lr~GksV~iPiYDf~t~~r~~~~~i~v~p~~ 159 (656)
T PLN02318 80 VFTEKVLNFMPSIAVISMDNYNDSSRIIDGNFDDPRLTDYDTLLDNIHDLKAGKSVQVPIYDFKSSSRVGYRTLEVPSSR 159 (656)
T ss_pred HHHHHHHhhCCCcEEEEEcceecchhhhCccCCChhhcchhHHHHHHHHHhCCCceecCccccccCcccCCceeecCCCc
Confidence 99999999998899999999976555677899999999999999999999999999999999999988765567788999
Q ss_pred EEEEecceeecccccCCCCEEEEEEcChhHHHHHHHHHHHHHhCCCHHHHHHHHHhccccchhhcccCCcCcCcEEEeCC
Q 006117 161 IVIIEGIYALSEKLRPLIDLRVSVTGGVHFDLVKRVFRDIQRVGQEPEEIIHQISETVYPMYKAFIEPDLQTAHIKIINK 240 (660)
Q Consensus 161 VVIVEGilaL~deLr~llDlkIfVdad~dirLiRRI~RDv~eRGrs~E~Vl~qy~~~v~P~~~~fIeP~k~~ADiII~N~ 240 (660)
|||+||+|++++++++++|++|||++|.++++.||+.||+.++|+++++++++|.+.++|+|.+||+|++++||+||.|+
T Consensus 160 VVIVEGIyaL~~~Lr~LlDlkIFVDtdvDirL~RRI~RD~~eRGrs~EsVi~q~~~~VkP~y~~FIeP~kk~ADIII~n~ 239 (656)
T PLN02318 160 IVIIEGIYALSEKLRPLLDLRVSVTGGVHFDLVKRVLRDIQRAGQEPEEIIHQISETVYPMYKAFIEPDLQTAHIKIVNK 239 (656)
T ss_pred EEEEechhhccHhHHhhCCEEEEEcCCccHHHHHHHHHHHHHhCCCHHHHHHHHHHhhcchHHHHhCcchhcceEEEecC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCCCCCCceEEeccCCCccHHHHHHHhcccccccccceeeeeecCCCCCcccccceEEEeecCCeEEEEEeeeecCCC
Q 006117 241 FNPFTGFQNPTYILKSTRPVTVDEIKAVMSKEHTETTEETYDIYLLPPGEDPDACQSYLRMRNRDGKYNLMFEEWVTDSP 320 (660)
Q Consensus 241 ~~p~~g~~n~v~iLKsa~~v~~~~IravL~~~~~~~~~~~~DIYl~pP~~d~~~tde~LRvR~~dg~~~Ltykg~~~d~~ 320 (660)
|+|+++++|++||+|+.+++.+++|+..|.+.....+++++||||+||++||++|++|||+|+++|+|+||||+|++|+|
T Consensus 240 f~P~~g~~np~~Ilk~~~~~~~~~i~~~L~~~~~~~~~~~~DiYl~~P~~d~~~~~e~LRvR~~~Gk~~Ltyke~i~dgp 319 (656)
T PLN02318 240 FNPFSGFQNPTYILKSSRSVTVEQIKAVLSEDHTETTEETYDIYLLPPGEDPETCQSYLRMRNRDGKYSLMFEEWVTDEP 319 (656)
T ss_pred CCCCCCCCCCeEEecCCccccHHHHHHHhhhccccccceeeEEEecCCCCCchhccceEEEEecCCEEEEEEecccccCC
Confidence 99999999999999999999999999999998889999999999999999999999999999999999999999999999
Q ss_pred ceeeeeEEEEeehhhHHHHhhcCCeEEEEEEEeeeEeecCcEEEEeecccccCcceEEEEeccHHHHHHHHHHcCCCCCc
Q 006117 321 FIISPRITFEVSVRLLGGLMALGYTIATILKRSSHIFYDDRVCVKTDWLEQLNRKYVQVQGRDRLYVKYVGEQLGLDGSY 400 (660)
Q Consensus 321 fi~rp~~efeV~v~~~~gL~~LGy~~aa~V~R~re~y~~g~~~i~lD~ve~Lg~~FveI~g~~~~~v~~~~~~Lgl~G~~ 400 (660)
||++|+++|||++++++||++|||+++|+|+|+|++|.+|+++|++|||||||++||||+|.+|+.|.++|++|||+|+|
T Consensus 320 ~ii~pk~~fEv~v~~~~gL~aLGy~~~a~vkk~r~iy~~g~v~i~lD~ve~Lg~~FvqIeg~~r~~V~~~a~kLGl~g~~ 399 (656)
T PLN02318 320 FIISPRITFEVSVRLLGGLMALGYTIATILKRSSHVFSDDKVCVKIDWLEQLNRKYVQVQGKDRLVVKDVAEQLGLEGSY 399 (656)
T ss_pred eecCcceeEEEeeehHhHHHHcCCceEEEEEEEEEEEecCCEEEEeehhhccCCeeEEEehhHHHHHHHHHHHcCCCCCc
Confidence 99999999999999999999999999999999999999999999999999999889999999999999999999999999
Q ss_pred cchhhHHHHHHhhhcccccCCChhhhcccccCcccccCchhhhhccccchhhhhhcc-cccccccccccccccccccccc
Q 006117 401 VPRTYIEQIQLEKLVNDVMALPDDLKTKLSIDDDLVSSPKEALSRASADRRTKYLSR-ISNSFSNQREKNLTKLARVAVN 479 (660)
Q Consensus 401 i~kSYLEli~lek~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~ 479 (660)
||+||||||||||+++++|+||||||+|||+|+++|+||||||+|+|+|||+||+++ |||||++||+||++||++++++
T Consensus 400 i~~SYlE~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 479 (656)
T PLN02318 400 IPRTYIEQIQLEKLVNEVMALPEDLKTKLSLDDDLVSSPKEALSRASADRRNKNLKSGLSHSYSTQRDKNLSKLTGLAVT 479 (656)
T ss_pred ccccHHHHHHHHHhHHHHhhccHHhhhhcccccccccCcHHHhhhhhhhhhhhhcccCcccccccccccccccccccccc
Confidence 999999999999999999999999999999999999999999999999999999999 9999999999999999999999
Q ss_pred ccccCCCCCCCCccccccchhhHHHHHHhhHhHhHHHHHHHHHHhhhcccccccCccccccceeccccCCCCCcceeecc
Q 006117 480 NRRFDGRTPESPASLANQGVINQLSEQISTLNERMDEFTSRIEEMNTKFAIRKVSASQQNLALQAEACNGSGPTSLFMTG 559 (660)
Q Consensus 480 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 559 (660)
+||||+|++++||++ |||+|||||||||+|||||||||||||||||||+++|+||||||+|+|+|+||||+|||||++|
T Consensus 480 ~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 558 (656)
T PLN02318 480 NRRFDERNSESPAAL-NQGAITQLSEQISSLNERMDEFTSRIEELNSKLSIKKNSPSQQNLALQAEACNGSAPTSYFVSG 558 (656)
T ss_pred ccccCCCCCCCchhh-ccchHHHHHHhhcchhhhhHHHHHHHHHHhhccccccCChhhhhhhccccccCCCCcchhhhcc
Confidence 999999999999999 9999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cCCCccccccccCCCCccccccCchhHHHHHHHhhhhHHHHHhHhhHHHHHHHhhhhchhhhccCCCCceeecccCccce
Q 006117 560 LANGSLTGSVLPNSSSSSQLARESPLMEEVLLVARGQRQIMHQLDSISNLLHEYWGERTRQERTDRPSRVIDVDSIGVPL 639 (660)
Q Consensus 560 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 639 (660)
++||+|||++||+|||||||++|+||||||..|+|||||||||||+|+|||||++|||++.. .+++.+.++++..+|+
T Consensus 559 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~ 636 (656)
T PLN02318 559 LGNGSLTGSILPLSSSSSQLAKESPLMEEILGIARGQRQVMHQLDNLSNLLHESLGERSGRN--RRNSRLLNVDSSQLPL 636 (656)
T ss_pred CCCcccccccccccccccccCccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhccccc--hhhccccccCcccchH
Confidence 99999999999999999999999999999999999999999999999999999999999655 4566788999999999
Q ss_pred eeeeeecceeeeeeccccc
Q 006117 640 ILTLAVGGLGLFLFKGLTF 658 (660)
Q Consensus 640 ~~~~~~~~~~~~~~~~~~~ 658 (660)
+++||+||+|+|+|+++.+
T Consensus 637 ~~~~~~~~~~~~~~~~~~~ 655 (656)
T PLN02318 637 ILSLAIGGIGIFLFKRLKN 655 (656)
T ss_pred HHHHHHhhhhhhhhhhhhc
Confidence 9999999999999999865
No 2
>COG0572 Udk Uridine kinase [Nucleotide transport and metabolism]
Probab=100.00 E-value=6.1e-35 Score=292.68 Aligned_cols=175 Identities=37% Similarity=0.674 Sum_probs=163.1
Q ss_pred CcceEEEEECCCCCcHHHHHHHHHHhCC--CceEEEecCccccc------ccccccCCCCCCCchhhHHHHHHhhhcCcc
Q 006117 64 HGIILVGVAGPSGAGKTVFTEKVLNFMP--SIAVITMDNYNDSS------RIIDGNFDDPRLTDYDTLLENIRGLKEGKA 135 (660)
Q Consensus 64 e~~~IIGI~GpSGSGKSTLak~L~~lLp--~~g~I~lDg~~~~~------~~i~~vfq~p~l~d~~tl~e~L~~L~~Gk~ 135 (660)
+++++|||+|+|||||||+++.|...++ ..+.|+.|+|+... ....++|+||.+||++.+.++|..|+.|+.
T Consensus 6 ~~~iiIgIaG~SgSGKTTva~~l~~~~~~~~~~~I~~D~YYk~~~~~~~~~~~~~n~d~p~A~D~dLl~~~L~~L~~g~~ 85 (218)
T COG0572 6 EKVIIIGIAGGSGSGKTTVAKELSEQLGVEKVVVISLDDYYKDQSHLPFEERNKINYDHPEAFDLDLLIEHLKDLKQGKP 85 (218)
T ss_pred CceEEEEEeCCCCCCHHHHHHHHHHHhCcCcceEeeccccccchhhcCHhhcCCcCccChhhhcHHHHHHHHHHHHcCCc
Confidence 4568999999999999999999999994 67899999997543 135679999999999999999999999999
Q ss_pred cccccccccccccccceeeecCCccEEEEecceeecc-cccCCCCEEEEEEcChhHHHHHHHHHHHHHhCCCHHHHHHHH
Q 006117 136 VQVPIYDFKSSSRIGYRTLEVPSSRIVIIEGIYALSE-KLRPLIDLRVSVTGGVHFDLVKRVFRDIQRVGQEPEEIIHQI 214 (660)
Q Consensus 136 I~~PiyD~s~~~rs~~~~~~v~~a~VVIVEGilaL~d-eLr~llDlkIfVdad~dirLiRRI~RDv~eRGrs~E~Vl~qy 214 (660)
+..|.|||.+|.|.. ++..+.+.+|||+||+|++++ ++++.+|++|||++|.|+|++||+.||+.+||++++.+++||
T Consensus 86 v~~P~yd~~~~~r~~-~~i~~~p~~VVIvEGi~~l~d~~lr~~~d~kIfvdtd~D~RliRri~RD~~~rg~~~e~vi~qy 164 (218)
T COG0572 86 VDLPVYDYKTHTREP-ETIKVEPNDVVIVEGILLLYDERLRDLMDLKIFVDTDADVRLIRRIKRDVQERGRDLESVIEQY 164 (218)
T ss_pred ccccccchhcccccC-CccccCCCcEEEEecccccccHHHHhhcCEEEEEeCCccHHHHHHHHHHHHHhCCCHHHHHHHH
Confidence 999999999999986 677889999999999999997 899999999999999999999999999999999999999999
Q ss_pred HhccccchhhcccCCcCcCcEEEeC
Q 006117 215 SETVYPMYKAFIEPDLQTAHIKIIN 239 (660)
Q Consensus 215 ~~~v~P~~~~fIeP~k~~ADiII~N 239 (660)
...++|+|++||+|++++||+||+.
T Consensus 165 ~~~vkp~~~~fIeptk~~ADiiip~ 189 (218)
T COG0572 165 VKTVRPMYEQFIEPTKKYADIIIPS 189 (218)
T ss_pred HHhhChhhhhccCcccccceEEeec
Confidence 9999999999999999999999973
No 3
>PTZ00301 uridine kinase; Provisional
Probab=99.97 E-value=5.1e-30 Score=257.79 Aligned_cols=175 Identities=31% Similarity=0.528 Sum_probs=155.5
Q ss_pred ceEEEEECCCCCcHHHHHHHHHHhC-----CC-ceEEEecCccccccc------ccccCCCCCCCchhhHHHHHHhhhcC
Q 006117 66 IILVGVAGPSGAGKTVFTEKVLNFM-----PS-IAVITMDNYNDSSRI------IDGNFDDPRLTDYDTLLENIRGLKEG 133 (660)
Q Consensus 66 ~~IIGI~GpSGSGKSTLak~L~~lL-----p~-~g~I~lDg~~~~~~~------i~~vfq~p~l~d~~tl~e~L~~L~~G 133 (660)
.++|||+|+||||||||++.|...+ +. ...+++|+|+..... -..+|++|.+||+..+.+.|..|+.|
T Consensus 3 ~~iIgIaG~SgSGKTTla~~l~~~l~~~~~~~~~~vi~~D~yy~~~~~~~~~~~~~~~~d~p~a~D~~~l~~~l~~L~~g 82 (210)
T PTZ00301 3 CTVIGISGASGSGKSSLSTNIVSELMAHCGPVSIGVICEDFYYRDQSNIPESERAYTNYDHPKSLEHDLLTTHLRELKSG 82 (210)
T ss_pred CEEEEEECCCcCCHHHHHHHHHHHHHhhcCCCeEEEeCCCCCccCcccCCHHHhcCCCCCChhhhCHHHHHHHHHHHHcC
Confidence 4799999999999999999887553 22 457889999754321 13689999999999999999999999
Q ss_pred cccccccccccccccccceeeecCCccEEEEecceeec-ccccCCCCEEEEEEcChhHHHHHHHHHHHHHhCCCHHHHHH
Q 006117 134 KAVQVPIYDFKSSSRIGYRTLEVPSSRIVIIEGIYALS-EKLRPLIDLRVSVTGGVHFDLVKRVFRDIQRVGQEPEEIIH 212 (660)
Q Consensus 134 k~I~~PiyD~s~~~rs~~~~~~v~~a~VVIVEGilaL~-deLr~llDlkIfVdad~dirLiRRI~RDv~eRGrs~E~Vl~ 212 (660)
+.+..|.||+..+.+.. ....+.+.+|||+||+|+++ +++++++|++|||+++.++++.||+.||+.+||++.+++++
T Consensus 83 ~~i~~P~yd~~~~~~~~-~~~~i~p~~ViIvEGi~~l~~~~l~~l~D~~ifvd~~~d~~~~Rr~~Rd~~~rG~~~e~v~~ 161 (210)
T PTZ00301 83 KTVQIPQYDYVHHTRSD-TAVTMTPKSVLIVEGILLFTNAELRNEMDCLIFVDTPLDICLIRRAKRDMRERGRTFESVIE 161 (210)
T ss_pred CcccCCCcccccCCcCC-ceEEeCCCcEEEEechhhhCCHHHHHhCCEEEEEeCChhHHHHHHHhhhHHhcCCCHHHHHH
Confidence 99999999999998875 55677888999999999985 68999999999999999999999999999999999999999
Q ss_pred HHHhccccchhhcccCCcCcCcEEEeCCC
Q 006117 213 QISETVYPMYKAFIEPDLQTAHIKIINKF 241 (660)
Q Consensus 213 qy~~~v~P~~~~fIeP~k~~ADiII~N~~ 241 (660)
+|.+.+.|++.+||+|++.+||+||+++.
T Consensus 162 ~~~~~v~~~~~~~I~p~k~~ADiIi~~~~ 190 (210)
T PTZ00301 162 QYEATVRPMYYAYVEPSKVYADIIVPSWK 190 (210)
T ss_pred HHHHhhcccHHHHcCccccCCcEEEcCCC
Confidence 99999999999999999999999997543
No 4
>PF00485 PRK: Phosphoribulokinase / Uridine kinase family; InterPro: IPR006083 Phosphoribulokinase (PRK) 2.7.1.19 from EC catalyses the ATP-dependent phosphorylation of ribulose-5-phosphate to ribulose-1,5-phosphate, a key step in the pentose phosphate pathway where carbon dioxide is assimilated by autotrophic organisms []. In general, plant enzymes are light-activated by the thioredoxin/ferredoxin system, while those from photosynthetic bacteria are regulated by a system that has an absolute requirement for NADH. Thioredoxin/ferredoxin regulation is mediated by the reversible oxidation/reduction of sulphydryl and disulphide groups. Uridine kinase (pyrimidine ribonucleoside kinase) is the rate-limiting enzyme in the pyrimidine salvage pathway. It catalyzes the following reaction: ATP + Uridine = ADP + UMP Pantothenate kinase (2.7.1.33 from EC) catalyzes the rate-limiting step in the biosynthesis of coenzyme A, the conversion of pantothenate to D-4'-phosphopantothenate in the presence of ATP. ; GO: 0005524 ATP binding, 0016301 kinase activity, 0008152 metabolic process; PDB: 2ZSE_A 2ZS7_A 3AF0_A 3AVP_A 2ZS9_A 2ZS8_A 3AEZ_A 2ZSB_A 2ZSD_A 2GEV_A ....
Probab=99.96 E-value=5.9e-29 Score=245.47 Aligned_cols=171 Identities=36% Similarity=0.670 Sum_probs=145.8
Q ss_pred EEEEECCCCCcHHHHHHHHHHhCC--------CceEEEecCccccc--------ccccccCCCCCCCchhhHHHHHHhhh
Q 006117 68 LVGVAGPSGAGKTVFTEKVLNFMP--------SIAVITMDNYNDSS--------RIIDGNFDDPRLTDYDTLLENIRGLK 131 (660)
Q Consensus 68 IIGI~GpSGSGKSTLak~L~~lLp--------~~g~I~lDg~~~~~--------~~i~~vfq~p~l~d~~tl~e~L~~L~ 131 (660)
||||+|++|||||||++.|...+. ..+.+.+|+|+... ....+.|++|.++++..+.+.|..|+
T Consensus 1 IIgI~G~sgSGKTTla~~L~~~L~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~p~a~d~~~l~~~l~~L~ 80 (194)
T PF00485_consen 1 IIGIAGPSGSGKTTLAKRLAQILNKRGIPAMEMDIILSLDDFYDDYHLRDRKGRGENRYNFDHPDAFDFDLLKEDLKALK 80 (194)
T ss_dssp EEEEEESTTSSHHHHHHHHHHHHTTCTTTCCCSEEEEEGGGGBHHHHHHHHHHHCTTTSSTTSGGGBSHHHHHHHHHHHH
T ss_pred CEEEECCCCCCHHHHHHHHHHHhCccCcCccceeEEEeecccccccchhhHhhccccccCCCCccccCHHHHHHHHHHHh
Confidence 799999999999999999999883 14577788875321 11246788999999999999999999
Q ss_pred cCcccccccccccccccccceeeecCCccEEEEecceeecc-cccCCCCEEEEEEcChhHHHHHHHHHHHHHhCCCHHHH
Q 006117 132 EGKAVQVPIYDFKSSSRIGYRTLEVPSSRIVIIEGIYALSE-KLRPLIDLRVSVTGGVHFDLVKRVFRDIQRVGQEPEEI 210 (660)
Q Consensus 132 ~Gk~I~~PiyD~s~~~rs~~~~~~v~~a~VVIVEGilaL~d-eLr~llDlkIfVdad~dirLiRRI~RDv~eRGrs~E~V 210 (660)
+|+.+..|.||+..+.+.+ ......+.+|||+||+|++++ ++++++|++|||+++.++++.||+.||+.+||++++++
T Consensus 81 ~g~~i~~p~yd~~~~~~~~-~~~~~~~~~ivIvEG~~~l~~~~l~~l~D~~ifld~~~~~~l~Rri~RD~~~rG~~~~~~ 159 (194)
T PF00485_consen 81 NGGSIEIPIYDFSTGDRDP-WIIIISPSDIVIVEGIYALYDEELRDLFDLKIFLDADEDLRLERRIQRDVAERGRSPEEV 159 (194)
T ss_dssp TTSCEEEEEEETTTTEEEE-EEEEEES-SEEEEEETTTTSSHCHGGG-SEEEEEEE-HHHHHHHHHHHHHHHS-S-HHHH
T ss_pred CCCccccccccccccccee-eeeecCCCCEEEEcccceeeeeeecccceeEEEecccHHHHHHHHhhhhccccCCcceeE
Confidence 9999999999999998876 344567889999999999984 78999999999999999999999999999999999999
Q ss_pred HHHHHhccccchhhcccCCcCcCcEEEeCC
Q 006117 211 IHQISETVYPMYKAFIEPDLQTAHIKIINK 240 (660)
Q Consensus 211 l~qy~~~v~P~~~~fIeP~k~~ADiII~N~ 240 (660)
+++|. .++|+|.+||+|+++.||+||++.
T Consensus 160 ~~~~~-~~~~~~~~~I~p~~~~ADivi~~~ 188 (194)
T PF00485_consen 160 IAQYE-RVRPGYERYIEPQKERADIVIPSG 188 (194)
T ss_dssp HHHHH-THHHHHHHCTGGGGGG-SEEEESC
T ss_pred EEEee-cCChhhhhheeccccccEEEECCC
Confidence 99997 999999999999999999999853
No 5
>cd02029 PRK_like Phosphoribulokinase-like (PRK-like) is a family of proteins similar to phosphoribulokinase (PRK), the enzyme involved in the Benson-Calvin cycle in chloroplasts or photosynthetic prokaryotes. PRK catalyzes the phosphorylation of D-ribulose 5-phosphate to form D-ribulose 1, 5-biphosphate, using ATP and NADPH produced by the primary reactions of photosynthesis.
Probab=99.95 E-value=9.6e-28 Score=247.73 Aligned_cols=170 Identities=21% Similarity=0.323 Sum_probs=148.2
Q ss_pred EEEEECCCCCcHHHHHHHHHHhCC----CceEEEecCcccccc-----------cccccCCC--CCCCchhhHHHHHHhh
Q 006117 68 LVGVAGPSGAGKTVFTEKVLNFMP----SIAVITMDNYNDSSR-----------IIDGNFDD--PRLTDYDTLLENIRGL 130 (660)
Q Consensus 68 IIGI~GpSGSGKSTLak~L~~lLp----~~g~I~lDg~~~~~~-----------~i~~vfq~--p~l~d~~tl~e~L~~L 130 (660)
+|||+|+|||||||+++.|...+. ....|..|+|+...+ ..+.+|+| |.+++++.+.+++..+
T Consensus 1 IIgItG~SGSGKTTv~~~l~~~l~~~g~~v~vI~~D~yyr~~r~~~~~~~~~a~~~~~nfdHf~PeAnd~dlL~~~l~~L 80 (277)
T cd02029 1 VIAVTGSSGAGTTTVKRAFEHIFAREGIHPAVVEGDSFHRYERMEMKMAIAEALDAGRNFSHFGPEANLFDLLEELFRTY 80 (277)
T ss_pred CEEEECCCCCCHHHHHHHHHHHHHhcCCceEEEeccccccCCchhHHHHHHHHhhcCCCCCCCCcccccHHHHHHHHHHH
Confidence 589999999999999999998872 467899999976321 13478999 9999999999999999
Q ss_pred hcCccccccccccc----------ccccccceeeecCCccEEEEecceeec----ccccCCCCEEEEEEcChhHHHHHHH
Q 006117 131 KEGKAVQVPIYDFK----------SSSRIGYRTLEVPSSRIVIIEGIYALS----EKLRPLIDLRVSVTGGVHFDLVKRV 196 (660)
Q Consensus 131 ~~Gk~I~~PiyD~s----------~~~rs~~~~~~v~~a~VVIVEGilaL~----deLr~llDlkIfVdad~dirLiRRI 196 (660)
++|+.+..|.|++. .+.+..++ ....+.++||+||++.+. .++++++|++|||+++.+++++||+
T Consensus 81 ~~g~~i~~p~Y~h~~~~~~~~~~~~gtft~~~-~~~~p~dvIivEGLhg~~~~~~~~lr~~~DlkIfVd~~~dlr~irRI 159 (277)
T cd02029 81 GETGRGRSRYYLHSDEEAAPFNQEPGTFTPWE-DLPEDTDLLFYEGLHGGVVTEGYNVAQHADLLVGVVPIINLEWIQKI 159 (277)
T ss_pred HcCCCcccceeeccccccccccCCCCccCCcc-cccCCCcEEEECCCCcccccccHHHHHhCCeEEEecCcHHHHHHHHH
Confidence 99999999999873 34444433 235789999999999543 4899999999999999999999999
Q ss_pred HHHHHHhCCCHHHHHHHHHhccccchhhcccCCcCcCcEEEeC
Q 006117 197 FRDIQRVGQEPEEIIHQISETVYPMYKAFIEPDLQTAHIKIIN 239 (660)
Q Consensus 197 ~RDv~eRGrs~E~Vl~qy~~~v~P~~~~fIeP~k~~ADiII~N 239 (660)
.||+.+||++.|.|+++|.+++ |+|.+||+|++.+||++|..
T Consensus 160 ~RD~~ERGrs~EsVi~qilrrm-pdy~~yI~PQ~~~tDI~fqr 201 (277)
T cd02029 160 HRDTAERGYSAEAVMDTILRRM-PDYINYICPQFSRTDINFQR 201 (277)
T ss_pred HhhhHhhCCCHHHHHHHHHHhC-chHHhhCCcccccCcEEEec
Confidence 9999999999999999999998 99999999999999999953
No 6
>COG1437 CyaB Adenylate cyclase, class 2 (thermophilic) [Nucleotide transport and metabolism]
Probab=99.94 E-value=3.9e-26 Score=221.49 Aligned_cols=150 Identities=26% Similarity=0.376 Sum_probs=135.6
Q ss_pred HHHHHHHhccccc--ccccceeeeeecCCCCCcccccceEEEe-ecCCeEEEEEeeeecCCCceeeeeEEEEee--hhhH
Q 006117 262 VDEIKAVMSKEHT--ETTEETYDIYLLPPGEDPDACQSYLRMR-NRDGKYNLMFEEWVTDSPFIISPRITFEVS--VRLL 336 (660)
Q Consensus 262 ~~~IravL~~~~~--~~~~~~~DIYl~pP~~d~~~tde~LRvR-~~dg~~~Ltykg~~~d~~fi~rp~~efeV~--v~~~ 336 (660)
...+++.|.+.+. ..+..+.|+||.+||+||+.+++++|+| ..+|.+.||||||+++.+.+++.+++++|+ ..+.
T Consensus 13 ~e~i~~~l~~~~~~~~~~e~q~DiYf~~p~rdf~~tdealRiR~~~~~~~~lTYKgp~ld~~~k~r~E~E~~v~D~~~~~ 92 (178)
T COG1437 13 LEEIRERLASLGAKFIKEEEQEDIYFDHPCRDFADTDEALRIRRINGGEVFLTYKGPKLDRESKTREEIEIEVSDVEKAL 92 (178)
T ss_pred HHHHHHHHHhccccccceeeeeeeeeecCCcchhcCcceeEEEEecCCcEEEEEecccccccccceeeEEEEeCCHHHHH
Confidence 4778888987654 4455566999999999999999999999 789999999999999999999999999998 7888
Q ss_pred HHHhhcCCeEEEEEEEeeeEeecCcEEEEeecccccCcceEEEEec---------cHHHHHHHHHHcCCC-CCccchhhH
Q 006117 337 GGLMALGYTIATILKRSSHIFYDDRVCVKTDWLEQLNRKYVQVQGR---------DRLYVKYVGEQLGLD-GSYVPRTYI 406 (660)
Q Consensus 337 ~gL~~LGy~~aa~V~R~re~y~~g~~~i~lD~ve~Lg~~FveI~g~---------~~~~v~~~~~~Lgl~-G~~i~kSYL 406 (660)
..|.+|||..++.|+|.|++|..|+++|+||.|+||| +|+||+-. +++.+.+++.+|||. ++.+++|||
T Consensus 93 ~il~~LGF~~~~~VkK~R~iY~~~~~~i~lD~VegLG-~F~EIE~~~~d~~e~~~~~~~~~~i~~~lGl~~~~~~r~sYl 171 (178)
T COG1437 93 EILKRLGFKEVAVVKKTREIYKVGNVTIELDAVEGLG-DFLEIEVMVDDENEIDGAKEEIEEIARQLGLKEEDLERRSYL 171 (178)
T ss_pred HHHHHcCCceeeEEEEEEEEEeeCCEEEEEecccCCc-ccEEEEEecCCchhhHHHHHHHHHHHHHhCCChhcccchhHH
Confidence 8999999999999999999999999999999999999 99999443 567899999999997 799999999
Q ss_pred HHHHHhh
Q 006117 407 EQIQLEK 413 (660)
Q Consensus 407 Eli~lek 413 (660)
||+ .++
T Consensus 172 ELl-~~~ 177 (178)
T COG1437 172 ELL-LEK 177 (178)
T ss_pred HHH-hcc
Confidence 999 543
No 7
>cd02025 PanK Pantothenate kinase (PanK) catalyzes the phosphorylation of pantothenic acid to form 4'-phosphopantothenic, which is the first of five steps in coenzyme A (CoA) biosynthetic pathway. The reaction carried out by this enzyme is a key regulatory point in CoA biosynthesis.
Probab=99.93 E-value=4.7e-26 Score=230.36 Aligned_cols=174 Identities=20% Similarity=0.305 Sum_probs=146.2
Q ss_pred EEEEECCCCCcHHHHHHHHHHhCC------CceEEEecCccccccc---ccc--cCCCCCCCchhhHHHHHHhhhc-Ccc
Q 006117 68 LVGVAGPSGAGKTVFTEKVLNFMP------SIAVITMDNYNDSSRI---IDG--NFDDPRLTDYDTLLENIRGLKE-GKA 135 (660)
Q Consensus 68 IIGI~GpSGSGKSTLak~L~~lLp------~~g~I~lDg~~~~~~~---i~~--vfq~p~l~d~~tl~e~L~~L~~-Gk~ 135 (660)
+|||+|+||||||||++.|++.+. .+..|++|+|+..... .+. .+..|..+|...+.+.|..++. ++.
T Consensus 1 IigI~G~sGSGKTTla~~L~~~l~~~~~~~~v~vi~~D~f~~~~~~~~~~~~~~~~g~p~~~d~~~l~~~L~~l~~g~~~ 80 (220)
T cd02025 1 IIGIAGSVAVGKSTTARVLQALLSRWPDHPNVELITTDGFLYPNKELIERGLMDRKGFPESYDMEALLKFLKDIKSGKKN 80 (220)
T ss_pred CEEeeCCCCCCHHHHHHHHHHHHhhcCCCCcEEEEecCcccCcHHHHHHhhhhhcCCCcccCCHHHHHHHHHHHHCCCCc
Confidence 589999999999999999999872 3567889999754321 121 2456888999999999999998 478
Q ss_pred cccccccccccccccceeeecCCccEEEEecceeeccc------ccCCCCEEEEEEcChhHH---HHHHHHHHHHHhCCC
Q 006117 136 VQVPIYDFKSSSRIGYRTLEVPSSRIVIIEGIYALSEK------LRPLIDLRVSVTGGVHFD---LVKRVFRDIQRVGQE 206 (660)
Q Consensus 136 I~~PiyD~s~~~rs~~~~~~v~~a~VVIVEGilaL~de------Lr~llDlkIfVdad~dir---LiRRI~RDv~eRGrs 206 (660)
+..|.||+..+.+.......+++.+|||+||+++++++ +++++|++|||++|.+++ +.+|..|++.++|++
T Consensus 81 v~~P~yd~~~~~~~~~~~~~~~~~~vvIvEG~~~l~~~~~~~~~l~~~~D~~ifvd~~~~~~~~rl~~R~~r~~~~~~r~ 160 (220)
T cd02025 81 VKIPVYSHLTYDVIPGEKQTVDQPDILIIEGLNVLQTGQNPRLFVSDFFDFSIYVDADEDDIEKWYIKRFLKLRETAFSD 160 (220)
T ss_pred EEccccceeccccCCCCceecCCCCEEEECCchhcCCcccchhhHHHhCCeEEEEECCHHHHHHHHHHHHHHHHHHHHhC
Confidence 99999999999887654444778899999999999864 899999999999999985 778888888888988
Q ss_pred HHHHHHH----------------HHhccccchhhcccCCcCcCcEEEeCCC
Q 006117 207 PEEIIHQ----------------ISETVYPMYKAFIEPDLQTAHIKIINKF 241 (660)
Q Consensus 207 ~E~Vl~q----------------y~~~v~P~~~~fIeP~k~~ADiII~N~~ 241 (660)
...+++| |.+.++|++.+||.|++.+||+||+.+.
T Consensus 161 ~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~i~p~~~~AD~ii~~~~ 211 (220)
T cd02025 161 PDSYFHRYAKMSEEEAIAFAREVWKNINLKNLRENILPTRNRADLILEKGA 211 (220)
T ss_pred chhhhhcccCCCHHHHHHHHHHHHHHcCHHHHhhhccCCccceEEEEEeCC
Confidence 8877664 7779999999999999999999997553
No 8
>PLN02348 phosphoribulokinase
Probab=99.93 E-value=1.4e-25 Score=242.17 Aligned_cols=175 Identities=27% Similarity=0.499 Sum_probs=153.2
Q ss_pred ccCCcceEEEEECCCCCcHHHHHHHHHHhCC-------------------CceEEEecCcccccc----cccccCCCCCC
Q 006117 61 QKNHGIILVGVAGPSGAGKTVFTEKVLNFMP-------------------SIAVITMDNYNDSSR----IIDGNFDDPRL 117 (660)
Q Consensus 61 ~~ge~~~IIGI~GpSGSGKSTLak~L~~lLp-------------------~~g~I~lDg~~~~~~----~i~~vfq~p~l 117 (660)
...+++++|||+|+||||||||++.|...+. .+..|++|+|+...+ ..+..+.+|..
T Consensus 44 ~~~~~p~IIGIaG~SGSGKSTfA~~L~~~Lg~~~~~~~~~~~~~~~l~~~~~~VI~lDDYh~~dr~~r~~~g~t~ldP~a 123 (395)
T PLN02348 44 AADDGTVVIGLAADSGCGKSTFMRRLTSVFGGAAKPPKGGNPDSNTLISDTTTVICLDDYHSLDRTGRKEKGVTALDPRA 123 (395)
T ss_pred ccCCCCEEEEEECCCCCCHHHHHHHHHHHHhhccCCCccccccccccccCceEEEEcccccCCChhhHhhcCCccCCccc
Confidence 3446789999999999999999999999872 135799999975432 23455677889
Q ss_pred CchhhHHHHHHhhhcCcccccccccccccccccceeeecCCccEEEEecceeecc-cccCCCCEEEEEEcChhHHHHHHH
Q 006117 118 TDYDTLLENIRGLKEGKAVQVPIYDFKSSSRIGYRTLEVPSSRIVIIEGIYALSE-KLRPLIDLRVSVTGGVHFDLVKRV 196 (660)
Q Consensus 118 ~d~~tl~e~L~~L~~Gk~I~~PiyD~s~~~rs~~~~~~v~~a~VVIVEGilaL~d-eLr~llDlkIfVdad~dirLiRRI 196 (660)
++++.+.+.|..|++|+.+.+|.||+.++.....+ .+.+.+|||+||+|++++ .+++++|++|||+++.++++.||+
T Consensus 124 ~dfDll~~~L~~Lk~G~~I~~PiYDh~tg~~~~~e--~I~p~~VVIVEGlh~L~~e~lr~l~D~~IyVd~~~dvrl~RRI 201 (395)
T PLN02348 124 NNFDLMYEQVKALKEGKAVEKPIYNHVTGLLDPPE--LIEPPKILVIEGLHPMYDERVRDLLDFSIYLDISDDVKFAWKI 201 (395)
T ss_pred ccHHHHHHHHHHHHCCCcEEeeccccCCCCcCCcE--EcCCCcEEEEechhhccCccccccCcEEEEEECCHHHHHHHHH
Confidence 99999999999999999999999999999766533 577899999999999985 699999999999999999999999
Q ss_pred HHHHHHhCCCHHHHHHHHHhccccchhhcccCCcCcCcEEEe
Q 006117 197 FRDIQRVGQEPEEIIHQISETVYPMYKAFIEPDLQTAHIKII 238 (660)
Q Consensus 197 ~RDv~eRGrs~E~Vl~qy~~~v~P~~~~fIeP~k~~ADiII~ 238 (660)
+||+.+||++.+++.++|. .++|+|.+||+|.+.+||+||.
T Consensus 202 ~RD~~eRG~S~EeV~~~i~-ar~pd~~~yI~pqk~~ADiVI~ 242 (395)
T PLN02348 202 QRDMAERGHSLESIKASIE-ARKPDFDAYIDPQKQYADVVIE 242 (395)
T ss_pred HhhHhhcCCCHHHHHHHHH-hcCcchhhhcccccccCCEEEE
Confidence 9999999999999999984 6799999999999999999994
No 9
>cd02028 UMPK_like Uridine monophosphate kinase_like (UMPK_like) is a family of proteins highly similar to the uridine monophosphate kinase (UMPK, EC 2.7.1.48), also known as uridine kinase or uridine-cytidine kinase (UCK).
Probab=99.93 E-value=1e-25 Score=220.85 Aligned_cols=169 Identities=46% Similarity=0.741 Sum_probs=148.0
Q ss_pred EEEEECCCCCcHHHHHHHHHHhC----CCceEEEecCccccc---ccccccCCCCCCCchhhHHHHHHhhhcCccccccc
Q 006117 68 LVGVAGPSGAGKTVFTEKVLNFM----PSIAVITMDNYNDSS---RIIDGNFDDPRLTDYDTLLENIRGLKEGKAVQVPI 140 (660)
Q Consensus 68 IIGI~GpSGSGKSTLak~L~~lL----p~~g~I~lDg~~~~~---~~i~~vfq~p~l~d~~tl~e~L~~L~~Gk~I~~Pi 140 (660)
+|||+|++|||||||++.|...+ ..+..|++|+|+... ......++++..+|+..+.++|..+++++.+..|.
T Consensus 1 ii~i~G~sgsGKttla~~l~~~l~~~~~~~~~i~~Ddf~~~~~~~~~~~g~~d~~~~~d~~~l~~~l~~l~~~~~~~~p~ 80 (179)
T cd02028 1 VVGIAGPSGSGKTTFAKKLSNQLRVNGIGPVVISLDDYYVPRKTPRDEDGNYDFESILDLDLLNKNLHDLLNGKEVELPI 80 (179)
T ss_pred CEEEECCCCCCHHHHHHHHHHHHHHcCCCEEEEehhhcccCcccccccCCCCCCCccccHHHHHHHHHHHHCCCeeeccc
Confidence 58999999999999999999986 357889999997632 23346788888899999999999999999999999
Q ss_pred ccccccccccceeeecCCccEEEEecceeecccccCCCCEEEEEEcChhH-HHHHHHHHHHHHhCCCHHHHHHHHHhccc
Q 006117 141 YDFKSSSRIGYRTLEVPSSRIVIIEGIYALSEKLRPLIDLRVSVTGGVHF-DLVKRVFRDIQRVGQEPEEIIHQISETVY 219 (660)
Q Consensus 141 yD~s~~~rs~~~~~~v~~a~VVIVEGilaL~deLr~llDlkIfVdad~di-rLiRRI~RDv~eRGrs~E~Vl~qy~~~v~ 219 (660)
||+.++.+.......+.+.+|||+||+|++++++++++|++|||+++.++ |+.||+.||+.+||++.++++++| . ..
T Consensus 81 yd~~~~~~~~~~~~~~~~~~vIIvEG~~~l~~~l~~~~d~~I~vd~~~~~~rl~rri~RD~~~rg~~~~~~i~~~-~-~~ 158 (179)
T cd02028 81 YDFRTGKRRGYRKLKLPPSGVVILEGIYALNERLRSLLDIRVAVSGGVHLNRLLRRVVRDIQFRGYSAELTILMW-P-SV 158 (179)
T ss_pred ceeECCccCCCceEEeCCCCEEEEecHHhcCHhHHhhcCEEEEEeCCccHHHHHHHHHHhHHhhCCCHHHHhhhc-c-cc
Confidence 99999988765456788999999999999999999999999999999998 999999999999999999999996 3 45
Q ss_pred cchhhcc-cCCcCcCcEEEe
Q 006117 220 PMYKAFI-EPDLQTAHIKII 238 (660)
Q Consensus 220 P~~~~fI-eP~k~~ADiII~ 238 (660)
|+++.++ .|+++.||+|++
T Consensus 159 ~~~~~~~~~~~~~~ad~~~~ 178 (179)
T cd02028 159 PSGEEFIIPPLQEAAIVMFN 178 (179)
T ss_pred cCchhhcCCCchhccceecc
Confidence 6666555 678999999974
No 10
>PRK05480 uridine/cytidine kinase; Provisional
Probab=99.93 E-value=2e-25 Score=222.15 Aligned_cols=178 Identities=36% Similarity=0.617 Sum_probs=157.9
Q ss_pred CcceEEEEECCCCCcHHHHHHHHHHhC--CCceEEEecCccccc------ccccccCCCCCCCchhhHHHHHHhhhcCcc
Q 006117 64 HGIILVGVAGPSGAGKTVFTEKVLNFM--PSIAVITMDNYNDSS------RIIDGNFDDPRLTDYDTLLENIRGLKEGKA 135 (660)
Q Consensus 64 e~~~IIGI~GpSGSGKSTLak~L~~lL--p~~g~I~lDg~~~~~------~~i~~vfq~p~l~d~~tl~e~L~~L~~Gk~ 135 (660)
.++.+|||+|+||||||||++.|++.+ .....+++|+|+... ......|++|..+++..+.+.|..+..+..
T Consensus 4 ~~~~iI~I~G~sGsGKTTl~~~l~~~l~~~~~~~i~~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~l~~~~~ 83 (209)
T PRK05480 4 KKPIIIGIAGGSGSGKTTVASTIYEELGDESIAVIPQDSYYKDQSHLSFEERVKTNYDHPDAFDHDLLIEHLKALKAGKA 83 (209)
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHHHhCCCceEEEeCCccccCcccCCHHHhcccCccCcccccHHHHHHHHHHHHcCCc
Confidence 356799999999999999999999998 357789999986532 123467888999999999999999999999
Q ss_pred cccccccccccccccceeeecCCccEEEEecceeec-ccccCCCCEEEEEEcChhHHHHHHHHHHHHHhCCCHHHHHHHH
Q 006117 136 VQVPIYDFKSSSRIGYRTLEVPSSRIVIIEGIYALS-EKLRPLIDLRVSVTGGVHFDLVKRVFRDIQRVGQEPEEIIHQI 214 (660)
Q Consensus 136 I~~PiyD~s~~~rs~~~~~~v~~a~VVIVEGilaL~-deLr~llDlkIfVdad~dirLiRRI~RDv~eRGrs~E~Vl~qy 214 (660)
+..|.||+.++.+.. ....+.+.+++|+||++++. +++.+.+|++|||++|.++++.|++.|+...+|++.++++++|
T Consensus 84 v~~p~~d~~~~~~~~-~~~~~~~~~~vivEg~~l~~~~~~~~~~d~~I~v~~~~~~~~~R~~~Rd~~~rg~~~e~~~~~~ 162 (209)
T PRK05480 84 IEIPVYDYTEHTRSK-ETIRVEPKDVIILEGILLLEDERLRDLMDIKIFVDTPLDIRLIRRLKRDVNERGRSLESVINQY 162 (209)
T ss_pred cccCcccccccccCC-CeEEeCCCCEEEEEeehhcCchhHhhhhceeEEEeCChhHHHHHHHhhcchhcCCCHHHHHHHH
Confidence 999999999988765 44456778899999999997 6889999999999999999999999999999999999999999
Q ss_pred HhccccchhhcccCCcCcCcEEEeCCCC
Q 006117 215 SETVYPMYKAFIEPDLQTAHIKIINKFN 242 (660)
Q Consensus 215 ~~~v~P~~~~fIeP~k~~ADiII~N~~~ 242 (660)
...+.|.|.+|++|.++.||+||.|+.+
T Consensus 163 ~~~~~~~~~~~i~~~~~~AD~vI~~~~~ 190 (209)
T PRK05480 163 LSTVRPMHLQFIEPSKRYADIIIPEGGK 190 (209)
T ss_pred HHhhhhhHHhhccHhhcceeEEecCCCc
Confidence 9999999999999999999999988753
No 11
>PRK15453 phosphoribulokinase; Provisional
Probab=99.93 E-value=3.3e-25 Score=230.51 Aligned_cols=173 Identities=20% Similarity=0.327 Sum_probs=145.2
Q ss_pred cceEEEEECCCCCcHHHHHHHHHHhCC----CceEEEecCcccccc-----------cccccCCC--CCCCchhhHHHHH
Q 006117 65 GIILVGVAGPSGAGKTVFTEKVLNFMP----SIAVITMDNYNDSSR-----------IIDGNFDD--PRLTDYDTLLENI 127 (660)
Q Consensus 65 ~~~IIGI~GpSGSGKSTLak~L~~lLp----~~g~I~lDg~~~~~~-----------~i~~vfq~--p~l~d~~tl~e~L 127 (660)
++.+|||+|+|||||||+++.|+..+. ....|..|+|+...+ ..+.+|++ |.+++++.+.+++
T Consensus 4 k~piI~ItG~SGsGKTTva~~l~~if~~~~~~~~vi~~D~yh~ydr~~~~~~~~~~~r~g~nfdhf~PdAnd~dlL~~~l 83 (290)
T PRK15453 4 KHPIIAVTGSSGAGTTTVKRAFEKIFRRENINAAVVEGDSFHRYTRPEMKAAIAKARAAGRHFSHFGPEANLFDELEQLF 83 (290)
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHHhhcCCCeEEEecccccccChhhHhhhhHHHHhcCCCCCCCCCCcccHHHHHHHH
Confidence 456999999999999999999998772 356789999875221 12458888 9999999999999
Q ss_pred HhhhcCccccccccccc-----ccccccce---e-eecCCccEEEEecceeec----ccccCCCCEEEEEEcChhHHHHH
Q 006117 128 RGLKEGKAVQVPIYDFK-----SSSRIGYR---T-LEVPSSRIVIIEGIYALS----EKLRPLIDLRVSVTGGVHFDLVK 194 (660)
Q Consensus 128 ~~L~~Gk~I~~PiyD~s-----~~~rs~~~---~-~~v~~a~VVIVEGilaL~----deLr~llDlkIfVdad~dirLiR 194 (660)
..+++++.+..|.|++. .+.+..+. . ...++.++||+||++.+. .+++.++|++|||+++.+++++|
T Consensus 84 ~~l~~~~~g~~~~Y~h~f~~a~~~~~~~gtft~~e~i~~p~dvIivEGLh~~~~~~~~~lr~~~DlkIfVdp~~dlr~ir 163 (290)
T PRK15453 84 REYGETGTGKTRKYLHTDDEAVPYNQVPGTFTPWEPLPEGTDLLFYEGLHGGVVTDQVDVAQHVDLLIGVVPIVNLEWIQ 163 (290)
T ss_pred HHHhcCCCcceeeccccccccccCCCCCCccCCceEecCCCcEEEEeccccccccccHHHHHhCCeeEeeCCcHhHHHHH
Confidence 99999999988888643 23333211 1 223679999999999884 36899999999999999999999
Q ss_pred HHHHHHHHhCCCHHHHHHHHHhccccchhhcccCCcCcCcEEEe
Q 006117 195 RVFRDIQRVGQEPEEIIHQISETVYPMYKAFIEPDLQTAHIKII 238 (660)
Q Consensus 195 RI~RDv~eRGrs~E~Vl~qy~~~v~P~~~~fIeP~k~~ADiII~ 238 (660)
|+.||+.+||++.|.|+++|.++. |+|.+||.|++.+|||++.
T Consensus 164 RI~RD~~ERGrs~EsVi~qilrrm-Pdy~~yI~PQ~~~tdInfq 206 (290)
T PRK15453 164 KIHRDTSERGYSREAVMDTILRRM-PDYINYITPQFSRTHINFQ 206 (290)
T ss_pred HHHhhhHhhCCCHHHHHHHHHHhC-ChHhhhCCCCcccCcEEEE
Confidence 999999999999999999999885 9999999999999999874
No 12
>KOG4203 consensus Armadillo/beta-Catenin/plakoglobin [Signal transduction mechanisms; Cytoskeleton]
Probab=99.93 E-value=9.1e-27 Score=258.40 Aligned_cols=398 Identities=23% Similarity=0.302 Sum_probs=321.5
Q ss_pred ccCCcceEEEEECCCCCcHHHHHHHHHHhCC---------CceEEEecCcccc-------cccc-cccCCCCCCCchhhH
Q 006117 61 QKNHGIILVGVAGPSGAGKTVFTEKVLNFMP---------SIAVITMDNYNDS-------SRII-DGNFDDPRLTDYDTL 123 (660)
Q Consensus 61 ~~ge~~~IIGI~GpSGSGKSTLak~L~~lLp---------~~g~I~lDg~~~~-------~~~i-~~vfq~p~l~d~~tl 123 (660)
..+..++++|+.|+++|||||++..+...+. ....++.|-++.. .... .++|++|++|++.++
T Consensus 39 ~~~~~~~~igv~~~s~~Gk~~~~~~i~~~l~~~~~~~~~~~v~~ls~~~fY~~lt~~~~~~a~~~~~~f~~pda~~~~l~ 118 (473)
T KOG4203|consen 39 PEGKEPFVIGVAGGTASGKSTVCEKIVEQLGAIERDGRQPQVVLLSQDSFYKVLTSEELAKAQEGKYNFDHPDAFDFELL 118 (473)
T ss_pred ccCcceEEEEeecCcccCceeehHHHHHHhhhhhhccCCCeEEEeecHHHHHhhchHHHHHhhhccccccCCCCcchhhH
Confidence 4567789999999999999998888876652 2223333333211 0112 489999999999999
Q ss_pred HHHHHhhhcCcccccccccccccccccceeeecCCccEEEEecceeecc-cccCCCCEEEEEEcChhHHHHHHHHHHHHH
Q 006117 124 LENIRGLKEGKAVQVPIYDFKSSSRIGYRTLEVPSSRIVIIEGIYALSE-KLRPLIDLRVSVTGGVHFDLVKRVFRDIQR 202 (660)
Q Consensus 124 ~e~L~~L~~Gk~I~~PiyD~s~~~rs~~~~~~v~~a~VVIVEGilaL~d-eLr~llDlkIfVdad~dirLiRRI~RDv~e 202 (660)
...+..+++|..+..|.|++.++.+.......+.+++++++||++++++ +.++++|.++|||++.+.++.+|+.|++.+
T Consensus 119 ~~~~~~~~kg~~v~ip~y~~~~~~~~~~~~~~l~~~~~~ilegil~~yd~~~~~l~~~k~fvd~~~d~rla~ri~r~~~~ 198 (473)
T KOG4203|consen 119 YLTLKNLKKGKAVEIPVYDFVTHSRDEEKTIVVYPADVIILEGILAFYDERVRDLFTMKLFVDTDADVRLARRILRDIVE 198 (473)
T ss_pred HHHHhcccccceeeceeeeeecccCCCCceEEecCCCceeehhHHHHhHHHHHHHhcceEEEecCcchhhHHHHhcchhh
Confidence 9999999999999999999999999776777889999999999999995 799999999999999999999999999999
Q ss_pred hCCCHHHHHHHHHhccccchhhcccCCcCcCcEEEeCCCCCCCCCCCceEEeccCCCccHHHHHHHhcccccccccceee
Q 006117 203 VGQEPEEIIHQISETVYPMYKAFIEPDLQTAHIKIINKFNPFTGFQNPTYILKSTRPVTVDEIKAVMSKEHTETTEETYD 282 (660)
Q Consensus 203 RGrs~E~Vl~qy~~~v~P~~~~fIeP~k~~ADiII~N~~~p~~g~~n~v~iLKsa~~v~~~~IravL~~~~~~~~~~~~D 282 (660)
+|++.+.++.||.++++|+|..||+|++++||++|+.. ..|.+ +.+....+++..|......
T Consensus 199 ~g~~l~~i~~q~~~f~kp~~~~~i~p~~~~ad~ii~~~------~~n~v-----ai~l~~~~i~~~L~~~~~~------- 260 (473)
T KOG4203|consen 199 RGRDLESILTQYSTFVKPAFEEFILPTKKYADVIIPRG------GDNDV-----AIDLIVQHILSILAEKSYV------- 260 (473)
T ss_pred hcccHHHHHHHHHhhcCchHHHHhhHHHHhhhheeecc------ccccc-----cceeeehhhhhhhhccccc-------
Confidence 99999999999999999999999999999999999743 33333 2233333444433321100
Q ss_pred eeecCCCCCcccccceEEEeecCCeEEEEEeeeecCCCceeeeeEEEEeehhhHHHHhhcCCeEEEEEEEeeeEeecCcE
Q 006117 283 IYLLPPGEDPDACQSYLRMRNRDGKYNLMFEEWVTDSPFIISPRITFEVSVRLLGGLMALGYTIATILKRSSHIFYDDRV 362 (660)
Q Consensus 283 IYl~pP~~d~~~tde~LRvR~~dg~~~Ltykg~~~d~~fi~rp~~efeV~v~~~~gL~~LGy~~aa~V~R~re~y~~g~~ 362 (660)
T Consensus 261 -------------------------------------------------------------------------------- 260 (473)
T KOG4203|consen 261 -------------------------------------------------------------------------------- 260 (473)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred EEEeecccccCcceEEEEeccHHHHHHHHHHcCCCCCccchhhHHHHHHhhhcccccCCCh--hhhcccccCcccccC--
Q 006117 363 CVKTDWLEQLNRKYVQVQGRDRLYVKYVGEQLGLDGSYVPRTYIEQIQLEKLVNDVMALPD--DLKTKLSIDDDLVSS-- 438 (660)
Q Consensus 363 ~i~lD~ve~Lg~~FveI~g~~~~~v~~~~~~Lgl~G~~i~kSYLEli~lek~~~~~~~~~~--~~~~~~~~~~~~~~~-- 438 (660)
++++.++.+|+ +++.+++...+...+
T Consensus 261 --------------------------------------------------~l~~~~~~l~~t~~i~~~~t~~~~~~Ts~~ 290 (473)
T KOG4203|consen 261 --------------------------------------------------RLYNNVLSLPDTNQIKGKLTLLRDHTTSRH 290 (473)
T ss_pred --------------------------------------------------cccccceecCCccccCCceeEeecCCcCCC
Confidence 55566677777 888888766665554
Q ss_pred chhhhhccccchhhhhhcc-ccccccccccccccccccccccccccCCCCCCCCccccccchhhHHHHHHhhHhHhHHHH
Q 006117 439 PKEALSRASADRRTKYLSR-ISNSFSNQREKNLTKLARVAVNNRRFDGRTPESPASLANQGVINQLSEQISTLNERMDEF 517 (660)
Q Consensus 439 ~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 517 (660)
|....+.... |+++... .++||...+.+.+.+++....+.. +...+...|....+.+.+.+.+.+ +.||+++
T Consensus 291 ~~~~~~~~~v--rl~l~~~~~~~p~~~~~i~~~~~~~~~~~~~~-~~i~gv~i~r~g~~~~~alr~~~~----~vri~~i 363 (473)
T KOG4203|consen 291 PFSFYSDHLV--RLVLEHGLGHLPYTEKRIVTPRGLAYSGVNFC-KQICGVSIPRSGESMETALRAACK----GVRIGKI 363 (473)
T ss_pred CHHHHHHHHH--HHHhhcccCcccceeeeEecccccchhccccc-chhccCCCCcchhHHHHHHHHHcC----Cceeeee
Confidence 4444333333 4777788 889999999999999999999888 777777888766666666666666 9999999
Q ss_pred HH-HHHHhhhcccccccCccccccc---eeccccCCCCCcceeecccCCCccccccccCCCCccccccCchhHHHHHHHh
Q 006117 518 TS-RIEEMNTKFAIRKVSASQQNLA---LQAEACNGSGPTSLFMTGLANGSLTGSVLPNSSSSSQLARESPLMEEVLLVA 593 (660)
Q Consensus 518 ~~-~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 593 (660)
+. |.++.+.+-......|.+++.- +.+..|||.++...|...+.+| +....+...+|....+.++|+....
T Consensus 364 l~qr~~~t~~~~l~~~~lP~~is~~V~ll~p~~~tg~~~~~a~~~ll~~g-----v~~~~i~~~~ll~~~~~~~~~~~~f 438 (473)
T KOG4203|consen 364 LIQRDEETGEPELHYEKLPKDISDRVLLLDPVLATGNSAMMAIILLLDHG-----VPEENIIFLNLLAAPQGIHEVAYAF 438 (473)
T ss_pred EeechhhccchhhhhhhCccccccceeeecchhhcchhHHHHHHHHHhCC-----CcHHHhHHHHHHhhhhhhhHHHHhc
Confidence 99 9999988776666777887777 8889999999999999999999 5777888899999999999999999
Q ss_pred hhhHHHHHhHhhHHHHHHHhhhhch
Q 006117 594 RGQRQIMHQLDSISNLLHEYWGERT 618 (660)
Q Consensus 594 ~~~~~~~~~~~~~~~~~~~~~~~~~ 618 (660)
++++++++|+|...|..+....+..
T Consensus 439 ~~v~~v~~~~d~~~~~~~~~~pg~g 463 (473)
T KOG4203|consen 439 PKVKIVTSQIDKLLNEKRYVVPGLG 463 (473)
T ss_pred ccceeehhhhcccccccceECcccc
Confidence 9999999999999998777665443
No 13
>TIGR00318 cyaB adenylyl cyclase CyaB, putative. The protein CyaB from Aeromonas hydrophila is a second adenylyl cyclase from that species, as demonstrated by complementation in E. coli and by assay of the enzymatic properties of purified recombinant protein. It has no detectable homology to any other protein of known function, and has several unusual properties, including an optimal temperature of 65 degrees and an optimal pH of 9.5. A cluster of uncharaterized archaeal homologs may be orthologous and serve (under certain circumstances) to produce the regulatory metabolite cyclic AMP (cAMP).
Probab=99.92 E-value=2.6e-24 Score=210.47 Aligned_cols=147 Identities=19% Similarity=0.263 Sum_probs=133.1
Q ss_pred HHHHHHhcccccc--cccceeeeeecCCCCCcccccceEEEeecCCeEEEEEeeeecCCCceeeeeEEEEee--hhhHHH
Q 006117 263 DEIKAVMSKEHTE--TTEETYDIYLLPPGEDPDACQSYLRMRNRDGKYNLMFEEWVTDSPFIISPRITFEVS--VRLLGG 338 (660)
Q Consensus 263 ~~IravL~~~~~~--~~~~~~DIYl~pP~~d~~~tde~LRvR~~dg~~~Ltykg~~~d~~fi~rp~~efeV~--v~~~~g 338 (660)
+.++..|...+.. ....+.|+||.+|++++..++.|||+|..++.++||||||..+..++++++++++|+ ..+...
T Consensus 14 ~~~~~~L~~~g~~~~~~~~q~D~Yfd~p~~~l~~~~~~LRiR~~~~~~~lT~Kgp~~~~~~~~~~E~e~~v~d~~~~~~i 93 (174)
T TIGR00318 14 EKVVEKLKNKGFKFIKKEFQHDIYFSNPCRDFASTDEALRIRKLTGEKFVTYKGPKIDNESKTRKEIEFKIEDIENALQI 93 (174)
T ss_pred HHHHHHHHhcCcccccccceEEEeecCCCcchhhCCcEEEEEEcCCcEEEEEeCCccCCcceEEEEEEEEECCHHHHHHH
Confidence 5677777665443 334466999999999999999999999999999999999999999999999999996 788889
Q ss_pred HhhcCCeEEEEEEEeeeEeecCcEEEEeecccccCcceEEEEecc---------HHHHHHHHHHcCCCCCccchhhHHHH
Q 006117 339 LMALGYTIATILKRSSHIFYDDRVCVKTDWLEQLNRKYVQVQGRD---------RLYVKYVGEQLGLDGSYVPRTYIEQI 409 (660)
Q Consensus 339 L~~LGy~~aa~V~R~re~y~~g~~~i~lD~ve~Lg~~FveI~g~~---------~~~v~~~~~~Lgl~G~~i~kSYLEli 409 (660)
|.+|||.+++.+.|.|++|..|+++|++|+|+||| +||||++.. ++.+.+++++|||.++.+++||+||+
T Consensus 94 L~~LG~~~~~~v~K~R~~~~l~~~~i~lD~v~~lG-~FvEIE~~~~~~~~~~~~~~~i~~~~~~LGl~~~~~~~sY~ell 172 (174)
T TIGR00318 94 LKKLGFKKVYEVIKKRRIYQTNELNVSIDDVEGLG-FFLEIEKIINNINDKDLALEEIFEIINQLGIKDNIERRSYLELL 172 (174)
T ss_pred HHHCCCeEEEEEEEEEEEEEECCEEEEEEccCCCc-cEEEEEEecCCccchHHHHHHHHHHHHHcCCCcCcccccHHHHh
Confidence 99999999999999999999999999999999999 999999874 36899999999998899999999998
Q ss_pred H
Q 006117 410 Q 410 (660)
Q Consensus 410 ~ 410 (660)
.
T Consensus 173 ~ 173 (174)
T TIGR00318 173 S 173 (174)
T ss_pred h
Confidence 3
No 14
>TIGR00235 udk uridine kinase. Model contains a number of longer eukaryotic proteins and starts bringing in phosphoribulokinase hits at scores of 160 and below
Probab=99.92 E-value=2.3e-24 Score=214.85 Aligned_cols=174 Identities=36% Similarity=0.640 Sum_probs=155.4
Q ss_pred eEEEEECCCCCcHHHHHHHHHHhCC--CceEEEecCccccc------ccccccCCCCCCCchhhHHHHHHhhhcCccccc
Q 006117 67 ILVGVAGPSGAGKTVFTEKVLNFMP--SIAVITMDNYNDSS------RIIDGNFDDPRLTDYDTLLENIRGLKEGKAVQV 138 (660)
Q Consensus 67 ~IIGI~GpSGSGKSTLak~L~~lLp--~~g~I~lDg~~~~~------~~i~~vfq~p~l~d~~tl~e~L~~L~~Gk~I~~ 138 (660)
.+|||+|+||||||||++.|++.++ ..+.+++|+|.... ...+++|++|..++...+.+.|..+..|+.+..
T Consensus 7 ~vi~I~G~sGsGKSTl~~~l~~~l~~~~~~~i~~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~l~~g~~v~~ 86 (207)
T TIGR00235 7 IIIGIGGGSGSGKTTVARKIYEQLGKLEIVIISQDNYYKDQSHLEMAERKKTNFDHPDAFDNDLLYEHLKNLKNGSPIDV 86 (207)
T ss_pred EEEEEECCCCCCHHHHHHHHHHHhcccCCeEecccccccChhhCCHHHhcCCCCCCccHhHHHHHHHHHHHHHCCCCEec
Confidence 4999999999999999999999984 67899999985431 235678999999999999999999999999999
Q ss_pred ccccccccccccceeeecCCccEEEEecceeec-ccccCCCCEEEEEEcChhHHHHHHHHHHHHHhCCCHHHHHHHHHhc
Q 006117 139 PIYDFKSSSRIGYRTLEVPSSRIVIIEGIYALS-EKLRPLIDLRVSVTGGVHFDLVKRVFRDIQRVGQEPEEIIHQISET 217 (660)
Q Consensus 139 PiyD~s~~~rs~~~~~~v~~a~VVIVEGilaL~-deLr~llDlkIfVdad~dirLiRRI~RDv~eRGrs~E~Vl~qy~~~ 217 (660)
|.||+..+.+.. +...+.+..++|+||.+++. ..+.+.+|.+|||+++.++++.|++.|+...+|++.++++++|...
T Consensus 87 p~yd~~~~~~~~-~~~~~~~~~~vIieG~~~~~~~~~~~~~d~~I~v~~~~~~~l~R~~~R~~~~rg~~~~~~~~~~~~~ 165 (207)
T TIGR00235 87 PVYDYVNHTRPK-ETVHIEPKDVVILEGIMPLFDERLRDLMDLKIFVDTPLDIRLIRRIERDINERGRSLDSVIDQYRKT 165 (207)
T ss_pred ccceeecCCCCC-ceEEeCCCCEEEEEehhhhchHhHHHhCCEEEEEECChhHHHHHHHHHHHHhhCCCHHHHHHHHHHh
Confidence 999999887744 44567788999999999986 4588899999999999999999999999999999999999999999
Q ss_pred cccchhhcccCCcCcCcEEEeCCC
Q 006117 218 VYPMYKAFIEPDLQTAHIKIINKF 241 (660)
Q Consensus 218 v~P~~~~fIeP~k~~ADiII~N~~ 241 (660)
++|+|..|++|.+..||+||.|+.
T Consensus 166 ~~~~~~~~i~~~~~~Ad~vi~~~~ 189 (207)
T TIGR00235 166 VRPMYEQFVEPTKQYADLIIPEGG 189 (207)
T ss_pred hhhhHHHhCcccccccEEEEcCCC
Confidence 999999999999999999998654
No 15
>TIGR00554 panK_bact pantothenate kinase, bacterial type. Shown to be a homodimer in E. coli. This enzyme catalyzes the rate-limiting step in the biosynthesis of coenzyme A. It is very well conserved from E. coli to B. subtilis, but differs considerably from known eukaryotic forms, described in a separate model.
Probab=99.91 E-value=1.1e-23 Score=221.15 Aligned_cols=179 Identities=20% Similarity=0.245 Sum_probs=145.1
Q ss_pred CCcceEEEEECCCCCcHHHHHHHHHHhC---C---CceEEEecCcccccc---ccc--ccCCCCCCCchhhHHHHHHhhh
Q 006117 63 NHGIILVGVAGPSGAGKTVFTEKVLNFM---P---SIAVITMDNYNDSSR---IID--GNFDDPRLTDYDTLLENIRGLK 131 (660)
Q Consensus 63 ge~~~IIGI~GpSGSGKSTLak~L~~lL---p---~~g~I~lDg~~~~~~---~i~--~vfq~p~l~d~~tl~e~L~~L~ 131 (660)
.+.|++|||+|||||||||++++|.+++ | .+..+++|+|+.... ..+ ..+..|..+|...+.+.+..++
T Consensus 59 ~~~p~IIGIaG~~GSGKSTlar~L~~ll~~~~~~g~V~vi~~D~f~~~~~~l~~~g~~~~~g~P~s~D~~~l~~~L~~Lk 138 (290)
T TIGR00554 59 AKIPYIISIAGSVAVGKSTTARILQALLSRWPEHRKVELITTDGFLHPNQVLKERNLMKKKGFPESYDMHRLVKFLSDLK 138 (290)
T ss_pred CCCCEEEEEECCCCCCHHHHHHHHHHHHhhcCCCCceEEEecccccccHHHHHHcCCccccCCChhccHHHHHHHHHHHH
Confidence 4568999999999999999999998887 3 245678999875431 111 3456788999999999999999
Q ss_pred cCcc-cccccccccccccccceeeecCCccEEEEecceeec-cc----------ccCCCCEEEEEEcChhHHHHHHHHHH
Q 006117 132 EGKA-VQVPIYDFKSSSRIGYRTLEVPSSRIVIIEGIYALS-EK----------LRPLIDLRVSVTGGVHFDLVKRVFRD 199 (660)
Q Consensus 132 ~Gk~-I~~PiyD~s~~~rs~~~~~~v~~a~VVIVEGilaL~-de----------Lr~llDlkIfVdad~dirLiRRI~RD 199 (660)
.|+. +..|.||+.++++..+....+.+.+|||+||++++. ++ +++++|++||||+|.+.+..|++.|.
T Consensus 139 ~g~~~v~~P~Yd~~~~d~~~~~~~~v~~~dIiIvEGi~vL~~~~~~~~~~~~~~~~d~~D~~IyvDa~~d~~~~w~i~R~ 218 (290)
T TIGR00554 139 SGKPNVTAPVYSHLTYDVIPDGFKVVVQPDILILEGLNVLQSGMDYPHDPHHVFVSDFVDFSIYVDAEEDLLQTWYINRF 218 (290)
T ss_pred CCCCceecCccccccCCcCCCCeEEcCCCCEEEECCchHhCCchhcccccchHHHHHhCCEEEEEECCHHHHHHHHHHHH
Confidence 9985 999999999999887655667889999999999996 33 46999999999999999998888886
Q ss_pred HHH--h-------------CCCHHH----HHHHHHhccccchhhcccCCcCcCcEEEeCCC
Q 006117 200 IQR--V-------------GQEPEE----IIHQISETVYPMYKAFIEPDLQTAHIKIINKF 241 (660)
Q Consensus 200 v~e--R-------------Grs~E~----Vl~qy~~~v~P~~~~fIeP~k~~ADiII~N~~ 241 (660)
..- + |++.++ +++.|.+...|++.+||+|++.+||+||..+.
T Consensus 219 ~~l~~~~~~~~~s~~~~~~~~~~~ea~~~~~~~w~~~~~~nl~~~I~Ptr~rAdlIl~~~~ 279 (290)
T TIGR00554 219 LKFREGAFTDPDSYFHNYAKLSKEEAIKTAMTIWKEINWLNLKQNILPTRERASLILTKGA 279 (290)
T ss_pred HHHHHhhhcCcchhhhhhccCCHHHHHHHHHHHHHHcchhhHHhhCCCCcccccEEEecCC
Confidence 432 2 444433 34457999999999999999999999998554
No 16
>cd02023 UMPK Uridine monophosphate kinase (UMPK, EC 2.7.1.48), also known as uridine kinase or uridine-cytidine kinase (UCK), catalyzes the reversible phosphoryl transfer from ATP to uridine or cytidine to yield UMP or CMP. In the primidine nucleotide-salvage pathway, this enzyme combined with nucleoside diphosphate kinases further phosphorylates UMP and CMP to form UTP and CTP. This kinase also catalyzes the phosphorylation of several cytotoxic ribonucleoside analogs such as 5-flurrouridine and cyclopentenyl-cytidine.
Probab=99.90 E-value=2.7e-23 Score=205.02 Aligned_cols=175 Identities=35% Similarity=0.646 Sum_probs=153.1
Q ss_pred EEEEECCCCCcHHHHHHHHHHhC--CCceEEEecCccccc------ccccccCCCCCCCchhhHHHHHHhhhcCcccccc
Q 006117 68 LVGVAGPSGAGKTVFTEKVLNFM--PSIAVITMDNYNDSS------RIIDGNFDDPRLTDYDTLLENIRGLKEGKAVQVP 139 (660)
Q Consensus 68 IIGI~GpSGSGKSTLak~L~~lL--p~~g~I~lDg~~~~~------~~i~~vfq~p~l~d~~tl~e~L~~L~~Gk~I~~P 139 (660)
+|||+|++|||||||+++|.+.+ ..+..+++|+|+... ......+++|..+++..+.+.|..+..++.+..|
T Consensus 1 iigi~G~~GsGKSTl~~~l~~~l~~~~~~v~~~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~p 80 (198)
T cd02023 1 IIGIAGGSGSGKTTVAEEIIEQLGNPKVVIISQDSYYKDLSHEELEERKNNNYDHPDAFDFDLLISHLQDLKNGKSVEIP 80 (198)
T ss_pred CEEEECCCCCCHHHHHHHHHHHhCCCCeEEEEecccccccccccHHHhccCCCCCCCcccHHHHHHHHHHHHCCCCEecc
Confidence 58999999999999999999997 357889999986422 1234567888889999999999999999999999
Q ss_pred cccccccccccceeeecCCccEEEEecceeec-ccccCCCCEEEEEEcChhHHHHHHHHHHHHHhCCCHHHHHHHHHhcc
Q 006117 140 IYDFKSSSRIGYRTLEVPSSRIVIIEGIYALS-EKLRPLIDLRVSVTGGVHFDLVKRVFRDIQRVGQEPEEIIHQISETV 218 (660)
Q Consensus 140 iyD~s~~~rs~~~~~~v~~a~VVIVEGilaL~-deLr~llDlkIfVdad~dirLiRRI~RDv~eRGrs~E~Vl~qy~~~v 218 (660)
.|++..+.+.... ..+.+.+++|+||.++++ +.+.+.+|.+|||+++.++++.||+.|+..+||++.+++.++|....
T Consensus 81 ~~d~~~~~~~~~~-~~i~~~~~vI~eg~~~~~~~~~~~~~d~~i~v~~~~~~~~~R~~~Rd~~~rg~~~~~~~~~~~~~~ 159 (198)
T cd02023 81 VYDFKTHSRLKET-VTVYPADVIILEGILALYDKELRDLMDLKIFVDTDADVRLIRRIERDIVERGRDLESVINQYLKFV 159 (198)
T ss_pred ccccccCcccCCc-eecCCCCEEEEechhhccchhHHhhcCeEEEEECChhHHHHHHHHHHhhhcCCCHHHHHHHHHHhh
Confidence 9999999876533 356778999999999998 57889999999999999999999999999999999999999999999
Q ss_pred ccchhhcccCCcCcCcEEEeCCCCC
Q 006117 219 YPMYKAFIEPDLQTAHIKIINKFNP 243 (660)
Q Consensus 219 ~P~~~~fIeP~k~~ADiII~N~~~p 243 (660)
.|.|..|++|.++.||+||.|+.++
T Consensus 160 ~~~~~~~i~~~~~~aD~ii~~~~~~ 184 (198)
T cd02023 160 KPMHEQFIEPTKRYADVIIPRGGDN 184 (198)
T ss_pred hhhHHHhCccchhceeEEECCCCCc
Confidence 9999999999999999999876543
No 17
>PRK05439 pantothenate kinase; Provisional
Probab=99.90 E-value=3.7e-23 Score=218.89 Aligned_cols=179 Identities=18% Similarity=0.237 Sum_probs=149.1
Q ss_pred cCCcceEEEEECCCCCcHHHHHHHHHHhCC------CceEEEecCccccccc-----ccccCCCCCCCchhhHHHHHHhh
Q 006117 62 KNHGIILVGVAGPSGAGKTVFTEKVLNFMP------SIAVITMDNYNDSSRI-----IDGNFDDPRLTDYDTLLENIRGL 130 (660)
Q Consensus 62 ~ge~~~IIGI~GpSGSGKSTLak~L~~lLp------~~g~I~lDg~~~~~~~-----i~~vfq~p~l~d~~tl~e~L~~L 130 (660)
..+.+++|||+|++||||||+++.|...+. .+..|++|||+..... .--.++.|..||...+.+.|..+
T Consensus 82 ~~~~~~iIgIaG~~gsGKSTla~~L~~~l~~~~~~~~v~vi~~DdFy~~~~~l~~~~l~~~kg~Pes~D~~~l~~~L~~L 161 (311)
T PRK05439 82 GQKVPFIIGIAGSVAVGKSTTARLLQALLSRWPEHPKVELVTTDGFLYPNAVLEERGLMKRKGFPESYDMRALLRFLSDV 161 (311)
T ss_pred CCCCCEEEEEECCCCCCHHHHHHHHHHHHHhhCCCCceEEEeccccccCHHHHhhhhccccCCCcccccHHHHHHHHHHH
Confidence 446689999999999999999999998761 4789999999755321 11236679999999999999999
Q ss_pred hcCcc-cccccccccccccccceeeecCCccEEEEecceeec-ccc------cCCCCEEEEEEcChhHHHHHHHHHHHHH
Q 006117 131 KEGKA-VQVPIYDFKSSSRIGYRTLEVPSSRIVIIEGIYALS-EKL------RPLIDLRVSVTGGVHFDLVKRVFRDIQR 202 (660)
Q Consensus 131 ~~Gk~-I~~PiyD~s~~~rs~~~~~~v~~a~VVIVEGilaL~-deL------r~llDlkIfVdad~dirLiRRI~RDv~e 202 (660)
+.|+. +..|.||+..+.+...+...+.+.+|||+||++++. ++. ++++|++|||++|.+....|++.|.+.-
T Consensus 162 k~G~~~v~~P~Yd~~~~d~~~~~~~~v~~~dIvIVEGi~~L~~~~~~~~~~l~d~~D~~IfVda~~~~~~~w~i~R~~~l 241 (311)
T PRK05439 162 KSGKPNVTAPVYSHLIYDIVPGEKQTVDQPDILIVEGLNVLQTGQNHHRLFVSDFFDFSIYVDADEDLIEKWYIERFLKL 241 (311)
T ss_pred HcCCCeEEeeeEEeecCCcCCCceEEeCCCCEEEEcCchhccCcccccchhhHHhCCEEEEEECCHHHHHHHHHHHHHHH
Confidence 99987 999999999999886566677889999999999985 454 8999999999999999888877777642
Q ss_pred ---------------hCCCHH----HHHHHHHhccccchhhcccCCcCcCcEEEeCC
Q 006117 203 ---------------VGQEPE----EIIHQISETVYPMYKAFIEPDLQTAHIKIINK 240 (660)
Q Consensus 203 ---------------RGrs~E----~Vl~qy~~~v~P~~~~fIeP~k~~ADiII~N~ 240 (660)
+|++.+ .+.++|...+.|++++||+|++.+||+||..+
T Consensus 242 r~~~~rdp~s~~~~~~~~s~~~a~~~a~~~w~~~~~pn~~~~I~Ptk~~ADlIi~~~ 298 (311)
T PRK05439 242 RETAFSDPDSYFHRYAKLSEEEAIAIARQIWDEINLPNLEENILPTRERADLILHKG 298 (311)
T ss_pred HHhhhcCcchhhhhhccCCHHHHHHHHHHHHHhcchhhHHHhccCCCcCCCEEEeCC
Confidence 355555 44556778999999999999999999999854
No 18
>cd02026 PRK Phosphoribulokinase (PRK) is an enzyme involved in the Benson-Calvin cycle in chloroplasts or photosynthetic prokaryotes. This enzyme catalyzes the phosphorylation of D-ribulose 5-phosphate to form D-ribulose 1, 5-biphosphate, using ATP and NADPH produced by the primary reactions of photosynthesis.
Probab=99.89 E-value=7.3e-23 Score=213.55 Aligned_cols=170 Identities=29% Similarity=0.520 Sum_probs=146.1
Q ss_pred EEEEECCCCCcHHHHHHHHHHhCC--CceEEEecCccccc----ccccccCCCCCCCchhhHHHHHHhhhcCcccccccc
Q 006117 68 LVGVAGPSGAGKTVFTEKVLNFMP--SIAVITMDNYNDSS----RIIDGNFDDPRLTDYDTLLENIRGLKEGKAVQVPIY 141 (660)
Q Consensus 68 IIGI~GpSGSGKSTLak~L~~lLp--~~g~I~lDg~~~~~----~~i~~vfq~p~l~d~~tl~e~L~~L~~Gk~I~~Piy 141 (660)
+|||+|+||||||||++.|+++++ +...|++|+++... ...++.+++|...+...+.+++..++.|+.+.+|.|
T Consensus 1 iigI~G~sGsGKSTl~~~L~~ll~~~~~~vi~~Dd~~~~~~~~r~~~g~~~~~p~~~~~d~l~~~l~~Lk~g~~i~~P~y 80 (273)
T cd02026 1 IIGVAGDSGCGKSTFLRRLTSLFGSDLVTVICLDDYHSLDRKGRKETGITALDPRANNFDLMYEQLKALKEGQAIEKPIY 80 (273)
T ss_pred CEEEECCCCCCHHHHHHHHHHhhCCCceEEEECcccccCCHHHHHHhhcccccccchhHHHHHHHHHHHHCCCCcccccc
Confidence 589999999999999999999983 34478889875432 234667778877777788999999999999999999
Q ss_pred cccccccccceeeecCCccEEEEecceeec-ccccCCCCEEEEEEcChhHHHHHHHHHHHHHhCCCHHHHHHHHHhcccc
Q 006117 142 DFKSSSRIGYRTLEVPSSRIVIIEGIYALS-EKLRPLIDLRVSVTGGVHFDLVKRVFRDIQRVGQEPEEIIHQISETVYP 220 (660)
Q Consensus 142 D~s~~~rs~~~~~~v~~a~VVIVEGilaL~-deLr~llDlkIfVdad~dirLiRRI~RDv~eRGrs~E~Vl~qy~~~v~P 220 (660)
++.++.... ...+.+.++||+||+++++ +.+++.+|++|||+++.++++.||++|++.++|++.+++.++|. ..+|
T Consensus 81 ~~~~~~~~~--~~~i~~~~ivIvEG~~~l~~~~l~~~~D~~I~vd~~~e~r~~r~i~Rd~~rrG~s~e~v~~~i~-~r~~ 157 (273)
T cd02026 81 NHVTGLIDP--PELIKPTKIVVIEGLHPLYDERVRELLDFSVYLDISDEVKFAWKIQRDMAERGHSLEDVLASIE-ARKP 157 (273)
T ss_pred cccCCCcCC--cEEcCCCCEEEEeeehhhCchhhhhhccEEEEEECChhHHHHHHHHHHHHHhCCCHHHHHHHHH-hhch
Confidence 999886543 2346778999999999886 48999999999999999999999999999999999999999995 4699
Q ss_pred chhhcccCCcCcCcEEEeCC
Q 006117 221 MYKAFIEPDLQTAHIKIINK 240 (660)
Q Consensus 221 ~~~~fIeP~k~~ADiII~N~ 240 (660)
++.+||+|.+.+||+||...
T Consensus 158 ~~~~~I~P~~~~ADvVI~~~ 177 (273)
T cd02026 158 DFEAYIDPQKQYADVVIQVL 177 (273)
T ss_pred hHHHHhccccccCcEEEEcc
Confidence 99999999999999999643
No 19
>PRK07429 phosphoribulokinase; Provisional
Probab=99.89 E-value=1.1e-22 Score=217.08 Aligned_cols=175 Identities=27% Similarity=0.483 Sum_probs=150.3
Q ss_pred CCcceEEEEECCCCCcHHHHHHHHHHhCC--CceEEEecCccccc----ccccccCCCCCCCchhhHHHHHHhhhcCccc
Q 006117 63 NHGIILVGVAGPSGAGKTVFTEKVLNFMP--SIAVITMDNYNDSS----RIIDGNFDDPRLTDYDTLLENIRGLKEGKAV 136 (660)
Q Consensus 63 ge~~~IIGI~GpSGSGKSTLak~L~~lLp--~~g~I~lDg~~~~~----~~i~~vfq~p~l~d~~tl~e~L~~L~~Gk~I 136 (660)
.+++++|||+|+||||||||++.|++.++ ....+++|+++... +..++.+.+|...+++.+.+++..++.|+.+
T Consensus 5 ~~~~~IIgI~G~SGSGKSTla~~L~~ll~~~~~~vi~~Dd~~~~~~~~r~~~g~~~l~p~~~~~d~l~~~l~~L~~g~~I 84 (327)
T PRK07429 5 PDRPVLLGVAGDSGCGKTTFLRGLADLLGEELVTVICTDDYHSYDRKQRKELGITALDPRANNLDIMYEHLKALKTGQPI 84 (327)
T ss_pred CCCCEEEEEECCCCCCHHHHHHHHHhHhccCceEEEEecccccCCHHHHHhcCCcccCccchHHHHHHHHHHHHHCCCce
Confidence 35689999999999999999999999983 35688999985332 2245556678888888999999999999999
Q ss_pred ccccccccccccccceeeecCCccEEEEecceeec-ccccCCCCEEEEEEcChhHHHHHHHHHHHHHhCCCHHHHHHHHH
Q 006117 137 QVPIYDFKSSSRIGYRTLEVPSSRIVIIEGIYALS-EKLRPLIDLRVSVTGGVHFDLVKRVFRDIQRVGQEPEEIIHQIS 215 (660)
Q Consensus 137 ~~PiyD~s~~~rs~~~~~~v~~a~VVIVEGilaL~-deLr~llDlkIfVdad~dirLiRRI~RDv~eRGrs~E~Vl~qy~ 215 (660)
.+|.|++.++.... ...+.+.++||+||.++++ ..+++.+|++|||+++.++++.||++|++.++|++.+++..+|.
T Consensus 85 ~~P~yd~~~g~~~~--~~~i~p~~iVIvEG~~~l~~~~lr~~~D~~I~Vda~~evr~~Rri~Rd~~rrG~s~eei~~~i~ 162 (327)
T PRK07429 85 LKPIYNHETGTFDP--PEYIEPNKIVVVEGLHPLYDERVRELYDFKVYLDPPEEVKIAWKIKRDMAKRGHTYEQVLAEIE 162 (327)
T ss_pred ecceeecCCCCcCC--cEecCCCcEEEEechhhcCcHhHHhhCCEEEEEECCHHHHHHHHHHHHHhhcCCCHHHHHHHHH
Confidence 99999999887654 2346778999999999776 46789999999999999999999999999999999999998885
Q ss_pred hccccchhhcccCCcCcCcEEEeCC
Q 006117 216 ETVYPMYKAFIEPDLQTAHIKIINK 240 (660)
Q Consensus 216 ~~v~P~~~~fIeP~k~~ADiII~N~ 240 (660)
..+|.+.+||+|.+..||+||.+.
T Consensus 163 -~r~pd~~~yI~P~k~~ADiVI~~~ 186 (327)
T PRK07429 163 -AREPDFEAYIRPQRQWADVVIQFL 186 (327)
T ss_pred -HhCccHhhhhcccccCCCEEEEcC
Confidence 569999999999999999999643
No 20
>PRK09270 nucleoside triphosphate hydrolase domain-containing protein; Reviewed
Probab=99.83 E-value=5.1e-20 Score=186.71 Aligned_cols=181 Identities=22% Similarity=0.295 Sum_probs=144.0
Q ss_pred cCCcceEEEEECCCCCcHHHHHHHHHHhC-CCceE----EEecCcccccc---ccccc--CCCCCCCchhhHHHHHHhhh
Q 006117 62 KNHGIILVGVAGPSGAGKTVFTEKVLNFM-PSIAV----ITMDNYNDSSR---IIDGN--FDDPRLTDYDTLLENIRGLK 131 (660)
Q Consensus 62 ~ge~~~IIGI~GpSGSGKSTLak~L~~lL-p~~g~----I~lDg~~~~~~---~i~~v--fq~p~l~d~~tl~e~L~~L~ 131 (660)
...++.+|||+|+||||||||++.|++.+ +..|. +++|+|+.... ..+.. +..|..++...+.+.+..++
T Consensus 29 ~~~~~~iigi~G~~GsGKTTl~~~L~~~l~~~~g~~~v~i~~D~~~~~~~~~~~~g~~~~~~~~~~~d~~~~~~~l~~l~ 108 (229)
T PRK09270 29 EPQRRTIVGIAGPPGAGKSTLAEFLEALLQQDGELPAIQVPMDGFHLDNAVLDAHGLRPRKGAPETFDVAGLAALLRRLR 108 (229)
T ss_pred cCCCCEEEEEECCCCCCHHHHHHHHHHHhhhccCCceEEEecccccCCHHHHHhcccccccCCCCCCCHHHHHHHHHHHH
Confidence 34567899999999999999999999998 34443 89999875431 12222 34567788888889999999
Q ss_pred cCc-ccccccccccccccccceeeecCCccEEEEecceeecc-----cccCCCCEEEEEEcChhHHHHHHHHHHHHHhCC
Q 006117 132 EGK-AVQVPIYDFKSSSRIGYRTLEVPSSRIVIIEGIYALSE-----KLRPLIDLRVSVTGGVHFDLVKRVFRDIQRVGQ 205 (660)
Q Consensus 132 ~Gk-~I~~PiyD~s~~~rs~~~~~~v~~a~VVIVEGilaL~d-----eLr~llDlkIfVdad~dirLiRRI~RDv~eRGr 205 (660)
.+. .+..|.||+..+..........+..+++|+||.+++.+ .+.+.+|.+|||+++.+.++.|.+.|+ .++|+
T Consensus 109 ~~~~~i~~P~yD~~~~~~~~~~~~~~~~~~ivIvEG~~~l~~~~~~~~l~~~~D~vi~v~~~~~~~~~R~~~R~-~~~g~ 187 (229)
T PRK09270 109 AGDDEVYWPVFDRSLEDPVADAIVVPPTARLVIVEGNYLLLDEEPWRRLAGLFDFTIFLDAPAEVLRERLVARK-LAGGL 187 (229)
T ss_pred cCCCceecccCCcccCCCCCCceEecCCCCEEEEcCcceeeccccHHHHHhhCCEEEEEECCHHHHHHHHHHHH-HhcCC
Confidence 887 89999999988776543222223578999999999864 567899999999999999887767775 46899
Q ss_pred CHHHHHHHHHhccccchhhcccCCcCcCcEEEeCCCCCC
Q 006117 206 EPEEIIHQISETVYPMYKAFIEPDLQTAHIKIINKFNPF 244 (660)
Q Consensus 206 s~E~Vl~qy~~~v~P~~~~fIeP~k~~ADiII~N~~~p~ 244 (660)
+.+++.++|..+..|.+ +|++|.++.||+||.|+..-+
T Consensus 188 s~~~~~~~~~~~~~~~~-~~i~~~~~~ad~vI~n~~~~~ 225 (229)
T PRK09270 188 SPEAAEAFVLRNDGPNA-RLVLETSRPADLVLEMTATGE 225 (229)
T ss_pred CHHHHHHHHHhcChHHH-HHHHhcCCCCCEEEEecCCcc
Confidence 99999999988888887 799999999999999987543
No 21
>PRK06696 uridine kinase; Validated
Probab=99.82 E-value=7.7e-20 Score=184.68 Aligned_cols=178 Identities=18% Similarity=0.259 Sum_probs=139.1
Q ss_pred CCcceEEEEECCCCCcHHHHHHHHHHhCC--C--ceEEEecCcccccccc-cccCCCC-----CCCchhhHHHHHHhhh-
Q 006117 63 NHGIILVGVAGPSGAGKTVFTEKVLNFMP--S--IAVITMDNYNDSSRII-DGNFDDP-----RLTDYDTLLENIRGLK- 131 (660)
Q Consensus 63 ge~~~IIGI~GpSGSGKSTLak~L~~lLp--~--~g~I~lDg~~~~~~~i-~~vfq~p-----~l~d~~tl~e~L~~L~- 131 (660)
+.++++|||.|++|||||||++.|+..++ + ...+++|+|+...... ...+.++ ..+|+..+.+.+....
T Consensus 19 ~~~~~iI~I~G~sgsGKSTlA~~L~~~l~~~g~~v~~~~~Ddf~~~~~~r~~~~~~~~~g~~~~~~d~~~L~~~l~~~l~ 98 (223)
T PRK06696 19 LTRPLRVAIDGITASGKTTFADELAEEIKKRGRPVIRASIDDFHNPRVIRYRRGRESAEGYYEDAYDYTALRRLLLDPLG 98 (223)
T ss_pred CCCceEEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEeccccccCCHHHHHHcCCCChhhcCccccCHHHHHHHHHhhcc
Confidence 45689999999999999999999999983 2 3345699997654221 1122232 5678888888887743
Q ss_pred cC--cccccccccccccccccceeeecCCccEEEEecceeecccccCCCCEEEEEEcChhHHHHHHHHHHHHHhCCCHHH
Q 006117 132 EG--KAVQVPIYDFKSSSRIGYRTLEVPSSRIVIIEGIYALSEKLRPLIDLRVSVTGGVHFDLVKRVFRDIQRVGQEPEE 209 (660)
Q Consensus 132 ~G--k~I~~PiyD~s~~~rs~~~~~~v~~a~VVIVEGilaL~deLr~llDlkIfVdad~dirLiRRI~RDv~eRGrs~E~ 209 (660)
.+ ..+..|.|++..+.........+++..+||+||++++.+++.+.+|.+|||++|.++++.|++.|+...+|. .++
T Consensus 99 ~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~vviveg~~l~~~~~~~~~d~~i~v~~~~e~~~~R~~~Rd~~~~g~-~~~ 177 (223)
T PRK06696 99 PNGDRQYRTASHDLKTDIPVHNPPLLAAPNAVLIVDGTFLLRPELRDLWDYKIFLDTDFEVSRRRGAKRDTEAFGS-YEE 177 (223)
T ss_pred CCCceeEeeeeeccccCcccCCCceecCCCCEEEEecHHHhhhhHHhhCCEEEEEECCHHHHHHHHHHhhhhhhCC-chH
Confidence 33 346778899988765433344456778999999999988999999999999999999999999999888885 566
Q ss_pred HHHHHHhccccchhhcccCC--cCcCcEEEeCCC
Q 006117 210 IIHQISETVYPMYKAFIEPD--LQTAHIKIINKF 241 (660)
Q Consensus 210 Vl~qy~~~v~P~~~~fIeP~--k~~ADiII~N~~ 241 (660)
+...|..++.|++..|+.+. +++||+||.|+.
T Consensus 178 ~~~~~~~r~~~~~~~y~~~~~p~~~ADivi~n~~ 211 (223)
T PRK06696 178 AEKMYLARYHPAQKLYIAEANPKERADVVIDNSD 211 (223)
T ss_pred HHHHHHHHHhHHHHHHHhhcChHhhCeEEEECCC
Confidence 78888899999999887554 899999998754
No 22
>cd02024 NRK1 Nicotinamide riboside kinase (NRK) is an enzyme involved in the metabolism of nicotinamide adenine dinucleotide (NAD+). This enzyme catalyzes the phosphorylation of nicotinamide riboside (NR) to form nicotinamide mononucleotide (NMN). It defines the NR salvage pathway of NAD+ biosynthesis in addition to the pathways through nicotinic acid mononucleotide (NaMN). This enzyme can also phosphorylate the anticancer drug tiazofurin, which is an analog of nicotinamide riboside.
Probab=99.78 E-value=1.7e-19 Score=178.69 Aligned_cols=158 Identities=17% Similarity=0.205 Sum_probs=124.9
Q ss_pred EEEEECCCCCcHHHHHHHHHHhCCCceEEEecCccccccc------ccccCCCCCCCchhhHHHHHHhhhcCcccccccc
Q 006117 68 LVGVAGPSGAGKTVFTEKVLNFMPSIAVITMDNYNDSSRI------IDGNFDDPRLTDYDTLLENIRGLKEGKAVQVPIY 141 (660)
Q Consensus 68 IIGI~GpSGSGKSTLak~L~~lLp~~g~I~lDg~~~~~~~------i~~vfq~p~l~d~~tl~e~L~~L~~Gk~I~~Piy 141 (660)
+|||.|++||||||+++.|+..++....|++|+|+..... -.++|++|..+|+..+.+.|..++.++.+..+.+
T Consensus 1 ii~i~G~sgsGKTtla~~l~~~~~~~~~i~~Ddf~~~~~~~~~~~~~~~~~d~p~a~D~~~l~~~L~~l~~~~~~~~~~~ 80 (187)
T cd02024 1 IVGISGVTNSGKTTLAKLLQRILPNCCVIHQDDFFKPEDEIPVDENGFKQWDVLEALDMEAMMSTLDYWRETGHFPKFLR 80 (187)
T ss_pred CEEEECCCCCCHHHHHHHHHHHcCCCeEEccccccCCcccCChHhhcCCCCCCcccccHHHHHHHHHHHHcCCCccCccc
Confidence 5899999999999999999999877889999999765421 1257999999999999999999999887666665
Q ss_pred ccccccccc-------------ceeeecCCccEEEEecceeec-ccccCCCCEEEEEEcChhHHHHHHHHHHHHH-hCCC
Q 006117 142 DFKSSSRIG-------------YRTLEVPSSRIVIIEGIYALS-EKLRPLIDLRVSVTGGVHFDLVKRVFRDIQR-VGQE 206 (660)
Q Consensus 142 D~s~~~rs~-------------~~~~~v~~a~VVIVEGilaL~-deLr~llDlkIfVdad~dirLiRRI~RDv~e-RGrs 206 (660)
+........ .......+.++||+||.++++ +++++++|++|||++|.++++.||+.|+..- .|.-
T Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iViVEG~~l~~~~~l~~l~D~~Ifvd~~~d~~~~Rr~~R~~~~~~~~~ 160 (187)
T cd02024 81 SHGNENDPEKEFIEDAQIEETKADLLGAEDLHILIVDGFLLYNYKPLVDLFDIRYFLRVPYETCKRRREARTGYVTLEGF 160 (187)
T ss_pred CccccccccccccchhhhhhccccccccCCCcEEEEechHhcCCHHHHhhcCceeEecCCHHHHHHHHHHcCCccccCcc
Confidence 554332211 123346778899999999988 5899999999999999999999999987322 1212
Q ss_pred HHHHHHHHHhccccchhhc
Q 006117 207 PEEIIHQISETVYPMYKAF 225 (660)
Q Consensus 207 ~E~Vl~qy~~~v~P~~~~f 225 (660)
..+...+|.+.|||+|.+.
T Consensus 161 w~Dp~~yf~~~v~p~y~~~ 179 (187)
T cd02024 161 WPDPPGYFDGHVWPMYLKH 179 (187)
T ss_pred cCCCCcccccccchhHHHH
Confidence 3556788899999999864
No 23
>cd07890 CYTH-like_AC_IV-like Adenylyl cyclase (AC) class IV-like, a subgroup of the CYTH-like superfamily. This subgroup contains class IV ACs and similar proteins. AC catalyzes the conversion of ATP to 3',5'-cyclic AMP (cAMP) and PPi. cAMP is a key signaling molecule which conveys a variety of signals in different cell types. In prokaryotes, cAMP is a catabolite derepression signal which triggers the expression of metabolic pathways including the lactose operon. Six non-homologous classes of ACs have been identified (I-VI). Class IV ACs are found in this group. In bacteria, the gene encoding Class IV AC has been designated cyaB and the protein as AC2. AC-IV occurs in addition to AC-I in bacterial pathogens such as Yersinia pestis (plague disease). The role of AC-IV is unknown but it has been speculated that it may be a factor in pathogenesis, perhaps providing cAMP for a secondary internal signaling function, or for secretion and uptake into host cells, where it may disrupt normal cel
Probab=99.77 E-value=6.7e-18 Score=163.90 Aligned_cols=146 Identities=23% Similarity=0.251 Sum_probs=129.0
Q ss_pred HHHHHHHhccc-c-cccccceeeeeecCCCCCcccccceEEEeecC--CeEEEEEeeeecCCCceeeeeEEEEee--hhh
Q 006117 262 VDEIKAVMSKE-H-TETTEETYDIYLLPPGEDPDACQSYLRMRNRD--GKYNLMFEEWVTDSPFIISPRITFEVS--VRL 335 (660)
Q Consensus 262 ~~~IravL~~~-~-~~~~~~~~DIYl~pP~~d~~~tde~LRvR~~d--g~~~Ltykg~~~d~~fi~rp~~efeV~--v~~ 335 (660)
.+.+++.|... . ......+.|+||..|+.++...+.|||+|..+ +.+.+|||+|..++.+..+++.+++|. ..+
T Consensus 11 ~~~~~~~l~~l~~~~~~~~~q~d~Yfd~p~~~l~~~~~~LRiR~~~~~~~~~lT~K~~~~~~~~~~~~E~e~~v~~~~~~ 90 (169)
T cd07890 11 LEALRERLAALGGAEGGREFQEDIYFDHPDRDLAATDEALRLRRMGDSGKTLLTYKGPKLDGGPKVREEIETEVADPEAM 90 (169)
T ss_pred HHHHHHHHHhcccccccceeEeEEEEcCCchhHHhCCCcEEEEEeCCCCcEEEEEECCCCCCCccceEEEEEecCCHHHH
Confidence 36667777653 2 22344566999999999999999999999988 999999999998886778999999995 677
Q ss_pred HHHHhhcCCeEEEEEEEeeeEeecCcEEEEeecccccCcceEEEEec------cHHHHHHHHHHcCCCC-CccchhhHHH
Q 006117 336 LGGLMALGYTIATILKRSSHIFYDDRVCVKTDWLEQLNRKYVQVQGR------DRLYVKYVGEQLGLDG-SYVPRTYIEQ 408 (660)
Q Consensus 336 ~~gL~~LGy~~aa~V~R~re~y~~g~~~i~lD~ve~Lg~~FveI~g~------~~~~v~~~~~~Lgl~G-~~i~kSYLEl 408 (660)
.+.|.+|||.+.+.+.|.|..|..++++|++|+++||| .|+||++. +.+.+..++..||+.+ +.+++||+|+
T Consensus 91 ~~iL~~lg~~~~~~~~K~R~~~~~~~~~v~lD~~~~lG-~f~EiE~~~~~~~~~~~~l~~~~~~lg~~~~~~~~~sy~~~ 169 (169)
T cd07890 91 KEILERLGFGPVGRVKKEREIYLLGQTRVHLDRVEGLG-DFVEIEVVLEDIEEAEEGLGEAAELLGLLEYDEETLSYLEL 169 (169)
T ss_pred HHHHHHcCCceeEEEEEEEEEEEECCEEEEEEccCCCC-ceEEEEEEeCCcHHHHHHHHHHHHHcCCCccCchhhhhhcC
Confidence 78899999999999999999999999999999999999 89999998 8999999999999987 7899999985
No 24
>COG1135 AbcC ABC-type metal ion transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=99.77 E-value=2.5e-20 Score=194.37 Aligned_cols=265 Identities=20% Similarity=0.243 Sum_probs=189.5
Q ss_pred ceeeeeccceeee-ecCceEEEEecceeeccCCcceEEEEECCCCCcHHHHHHHHHHhC-CCceEEEecCcccc------
Q 006117 33 RYEIVPIEDTLSF-EKGFFIVIRACQLLAQKNHGIILVGVAGPSGAGKTVFTEKVLNFM-PSIAVITMDNYNDS------ 104 (660)
Q Consensus 33 ~~ei~~~~~~ls~-~~g~~~vL~~Isl~i~~ge~~~IIGI~GpSGSGKSTLak~L~~lL-p~~g~I~lDg~~~~------ 104 (660)
|+++..+.+.|.. ..+...++++|||.+++|+ ++||+|.||||||||++++..+- |+.|.|.+||.+..
T Consensus 1 mI~l~~vsK~~~~~~~~~~~al~~vsL~I~~Ge---I~GIIG~SGAGKSTLiR~iN~Le~PtsG~v~v~G~di~~l~~~~ 77 (339)
T COG1135 1 MIELENVSKTFGQTGTGTVTALDDVSLEIPKGE---IFGIIGYSGAGKSTLLRLINLLERPTSGSVFVDGQDLTALSEAE 77 (339)
T ss_pred CeEEEeeeeeeccCCCCceeeeccceEEEcCCc---EEEEEcCCCCcHHHHHHHHhccCCCCCceEEEcCEecccCChHH
Confidence 4566667777655 3345789999999999999 99999999999999999999987 99999999995432
Q ss_pred ----cccccccCCCCCCCchhhHHHHHHhhhc--Cc---c-----------cccc-cccccccccccceeeecCCccEEE
Q 006117 105 ----SRIIDGNFDDPRLTDYDTLLENIRGLKE--GK---A-----------VQVP-IYDFKSSSRIGYRTLEVPSSRIVI 163 (660)
Q Consensus 105 ----~~~i~~vfq~p~l~d~~tl~e~L~~L~~--Gk---~-----------I~~P-iyD~s~~~rs~~~~~~v~~a~VVI 163 (660)
++.++++|||++++...++.+|++.-.+ |. . +-.+ .-+..+.+.++++++++..++.+.
T Consensus 78 Lr~~R~~IGMIFQhFnLLssrTV~~NvA~PLeiag~~k~ei~~RV~elLelVgL~dk~~~yP~qLSGGQKQRVaIARALa 157 (339)
T COG1135 78 LRQLRQKIGMIFQHFNLLSSRTVFENVAFPLELAGVPKAEIKQRVAELLELVGLSDKADRYPAQLSGGQKQRVAIARALA 157 (339)
T ss_pred HHHHHhhccEEeccccccccchHHhhhhhhHhhcCCCHHHHHHHHHHHHHHcCChhhhccCchhcCcchhhHHHHHHHHh
Confidence 2568999999999999999999874221 21 1 1111 123335567888999999999999
Q ss_pred EecceeecccccCCCCEEEEEEcChhHHHHHHHHHHHHHhCCCHHHHHHHHHhccccchhhcccCCcCcCcEEEeCCCCC
Q 006117 164 IEGIYALSEKLRPLIDLRVSVTGGVHFDLVKRVFRDIQRVGQEPEEIIHQISETVYPMYKAFIEPDLQTAHIKIINKFNP 243 (660)
Q Consensus 164 VEGilaL~deLr~llDlkIfVdad~dirLiRRI~RDv~eRGrs~E~Vl~qy~~~v~P~~~~fIeP~k~~ADiII~N~~~p 243 (660)
.++.+++.||....+|.. ++..-+.+.+.|.|. .|.|.--|.|++ +.
T Consensus 158 ~~P~iLL~DEaTSALDP~---TT~sIL~LL~~In~~---lglTIvlITHEm---------------------------~V 204 (339)
T COG1135 158 NNPKILLCDEATSALDPE---TTQSILELLKDINRE---LGLTIVLITHEM---------------------------EV 204 (339)
T ss_pred cCCCEEEecCccccCChH---HHHHHHHHHHHHHHH---cCCEEEEEechH---------------------------HH
Confidence 999999999999999974 333333344444433 466654444443 33
Q ss_pred CCCCCCceEEeccCCCccHHHHHHHhcccccccccceee--eeecCCCCCcccccceEEEeecCCeEEEEEeeeecCCCc
Q 006117 244 FTGFQNPTYILKSTRPVTVDEIKAVMSKEHTETTEETYD--IYLLPPGEDPDACQSYLRMRNRDGKYNLMFEEWVTDSPF 321 (660)
Q Consensus 244 ~~g~~n~v~iLKsa~~v~~~~IravL~~~~~~~~~~~~D--IYl~pP~~d~~~tde~LRvR~~dg~~~Ltykg~~~d~~f 321 (660)
...+|+.++++..++-+..+.+.+++.+.....++++.. .-.-.| +...+-++ -..+-.+.|+|-|.-.+.|.
T Consensus 205 vk~ic~rVavm~~G~lvE~G~v~~vF~~Pk~~~t~~fi~~~~~~~~~----~~~~~~l~-~~~~~~~rl~f~g~~~~~pl 279 (339)
T COG1135 205 VKRICDRVAVLDQGRLVEEGTVSEVFANPKHAITQEFIGETLEIDLP----EELLERLE-SGDGPLLRLTFTGESADQPL 279 (339)
T ss_pred HHHHhhhheEeeCCEEEEeccHHHhhcCcchHHHHHHHHhhccccCc----HHHHhhhc-cCCceEEEEEecCccccchH
Confidence 467788888888887777777888887776666666552 111111 11122222 22345689999999999999
Q ss_pred eeeeeEEEEeehhhHHH
Q 006117 322 IISPRITFEVSVRLLGG 338 (660)
Q Consensus 322 i~rp~~efeV~v~~~~g 338 (660)
+++--.+|.|+++++.|
T Consensus 280 is~~~~~~~v~~nIl~G 296 (339)
T COG1135 280 LSEVARRFGVDVNILSG 296 (339)
T ss_pred HHHHHHHhCCceEEEec
Confidence 88888888888887543
No 25
>PRK07667 uridine kinase; Provisional
Probab=99.73 E-value=1.1e-17 Score=165.78 Aligned_cols=165 Identities=16% Similarity=0.312 Sum_probs=122.2
Q ss_pred CcceEEEEECCCCCcHHHHHHHHHHhCC----CceEEEecCcccccccc-cccCCC-----CCCCchhhHHHH-HHhhhc
Q 006117 64 HGIILVGVAGPSGAGKTVFTEKVLNFMP----SIAVITMDNYNDSSRII-DGNFDD-----PRLTDYDTLLEN-IRGLKE 132 (660)
Q Consensus 64 e~~~IIGI~GpSGSGKSTLak~L~~lLp----~~g~I~lDg~~~~~~~i-~~vfq~-----p~l~d~~tl~e~-L~~L~~ 132 (660)
..+++|||.|++||||||+++.|...+. ....+++|+|....... ...+.+ ...+|...+.+. +..++.
T Consensus 15 ~~~~iIgI~G~~gsGKStla~~L~~~l~~~~~~~~~i~~Dd~~~~~~~~~~~~~~~~~~~~~~~~d~~~L~~~v~~~L~~ 94 (193)
T PRK07667 15 ENRFILGIDGLSRSGKTTFVANLKENMKQEGIPFHIFHIDDYIVERNKRYHTGFEEWYEYYYLQWDIEWLRQKFFRKLQN 94 (193)
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHHHHHhCCCcEEEEEcCcccchhhhHHhcCCCchhhhhhhhhhHHHHHHHHHHhhcC
Confidence 4458999999999999999999999872 46689999986432110 011111 112455556555 477888
Q ss_pred CcccccccccccccccccceeeecCCccEEEEecceeecccccCCCCEEEEEEcChhHHHHHHHHHHHHHhCCCHHHHHH
Q 006117 133 GKAVQVPIYDFKSSSRIGYRTLEVPSSRIVIIEGIYALSEKLRPLIDLRVSVTGGVHFDLVKRVFRDIQRVGQEPEEIIH 212 (660)
Q Consensus 133 Gk~I~~PiyD~s~~~rs~~~~~~v~~a~VVIVEGilaL~deLr~llDlkIfVdad~dirLiRRI~RDv~eRGrs~E~Vl~ 212 (660)
++.+.+|.|++..+.... ....+++.+++|+||++++..++.+.+|.+|||++|.++++.|.+.|+ |.+ ..
T Consensus 95 ~~~i~~P~~d~~~~~~~~-~~~~~~~~~vvIvEG~~l~~~~~~~~~d~~v~V~~~~~~~~~R~~~r~----~~~----~~ 165 (193)
T PRK07667 95 ETKLTLPFYHDETDTCEM-KKVQIPIVGVIVIEGVFLQRKEWRDFFHYMVYLDCPRETRFLRESEET----QKN----LS 165 (193)
T ss_pred CCeEEEeeeccccccccc-cceecCCCCEEEEEehhhhhhhHHhhceEEEEEECCHHHHHHHHhccc----HhH----HH
Confidence 899999999999876543 334456789999999998888899999999999999999888777654 323 35
Q ss_pred HHHhccccchhhcccC--CcCcCcEEE
Q 006117 213 QISETVYPMYKAFIEP--DLQTAHIKI 237 (660)
Q Consensus 213 qy~~~v~P~~~~fIeP--~k~~ADiII 237 (660)
+|..+.+|++..|+.. .+..||+||
T Consensus 166 ~~~~r~~~a~~~y~~~~~~~~~ad~i~ 192 (193)
T PRK07667 166 KFKNRYWKAEDYYLETESPKDRADLVI 192 (193)
T ss_pred HHHHHhHHHHHHHHhhcChHhhCcEEe
Confidence 5666667888888663 388999997
No 26
>COG1126 GlnQ ABC-type polar amino acid transport system, ATPase component [Amino acid transport and metabolism]
Probab=99.71 E-value=1.6e-17 Score=166.28 Aligned_cols=164 Identities=22% Similarity=0.233 Sum_probs=130.5
Q ss_pred ceeeeecCceEEEEecceeeccCCcceEEEEECCCCCcHHHHHHHHHHhC-CCceEEEecCcccc--------ccccccc
Q 006117 41 DTLSFEKGFFIVIRACQLLAQKNHGIILVGVAGPSGAGKTVFTEKVLNFM-PSIAVITMDNYNDS--------SRIIDGN 111 (660)
Q Consensus 41 ~~ls~~~g~~~vL~~Isl~i~~ge~~~IIGI~GpSGSGKSTLak~L~~lL-p~~g~I~lDg~~~~--------~~~i~~v 111 (660)
++++..+|...+|++|++.+++|+ ++.|+||||||||||++||.++- |+.|.|.+||.... ++.++++
T Consensus 6 ~~l~K~fg~~~VLkgi~l~v~~Ge---vv~iiGpSGSGKSTlLRclN~LE~~~~G~I~i~g~~~~~~~~~~~~R~~vGmV 82 (240)
T COG1126 6 KNLSKSFGDKEVLKGISLSVEKGE---VVVIIGPSGSGKSTLLRCLNGLEEPDSGSITVDGEDVGDKKDILKLRRKVGMV 82 (240)
T ss_pred EeeeEEeCCeEEecCcceeEcCCC---EEEEECCCCCCHHHHHHHHHCCcCCCCceEEECCEeccchhhHHHHHHhcCee
Confidence 344455589999999999999999 99999999999999999999997 89999999995332 2568999
Q ss_pred CCCCCCCchhhHHHHHHhhh---cC--------------cccccc-cccccccccccceeeecCCccEEEEecceeeccc
Q 006117 112 FDDPRLTDYDTLLENIRGLK---EG--------------KAVQVP-IYDFKSSSRIGYRTLEVPSSRIVIIEGIYALSEK 173 (660)
Q Consensus 112 fq~p~l~d~~tl~e~L~~L~---~G--------------k~I~~P-iyD~s~~~rs~~~~~~v~~a~VVIVEGilaL~de 173 (660)
||++++|+++++.+|+..-. .+ ..+-.. ..+....+.+++++++++.++.+..++.+++.||
T Consensus 83 FQ~fnLFPHlTvleNv~lap~~v~~~~k~eA~~~A~~lL~~VGL~~ka~~yP~qLSGGQqQRVAIARALaM~P~vmLFDE 162 (240)
T COG1126 83 FQQFNLFPHLTVLENVTLAPVKVKKLSKAEAREKALELLEKVGLADKADAYPAQLSGGQQQRVAIARALAMDPKVMLFDE 162 (240)
T ss_pred cccccccccchHHHHHHhhhHHHcCCCHHHHHHHHHHHHHHcCchhhhhhCccccCcHHHHHHHHHHHHcCCCCEEeecC
Confidence 99999999999999985211 11 011111 2455566788899999999999999999999999
Q ss_pred ccCCCCEEEEEEcChhHHHHHHHHHHHHHhCCCHHHHHHHH
Q 006117 174 LRPLIDLRVSVTGGVHFDLVKRVFRDIQRVGQEPEEIIHQI 214 (660)
Q Consensus 174 Lr~llDlkIfVdad~dirLiRRI~RDv~eRGrs~E~Vl~qy 214 (660)
+...+|. +-+.-.-.+.+++++.|+|.--|.|.+
T Consensus 163 PTSALDP-------Elv~EVL~vm~~LA~eGmTMivVTHEM 196 (240)
T COG1126 163 PTSALDP-------ELVGEVLDVMKDLAEEGMTMIIVTHEM 196 (240)
T ss_pred CcccCCH-------HHHHHHHHHHHHHHHcCCeEEEEechh
Confidence 9999995 444445567788888898876666655
No 27
>COG3842 PotA ABC-type spermidine/putrescine transport systems, ATPase components [Amino acid transport and metabolism]
Probab=99.71 E-value=1.7e-18 Score=185.77 Aligned_cols=138 Identities=25% Similarity=0.244 Sum_probs=115.5
Q ss_pred ceeeeecCceEEEEecceeeccCCcceEEEEECCCCCcHHHHHHHHHHhC-CCceEEEecCcccc-----cccccccCCC
Q 006117 41 DTLSFEKGFFIVIRACQLLAQKNHGIILVGVAGPSGAGKTVFTEKVLNFM-PSIAVITMDNYNDS-----SRIIDGNFDD 114 (660)
Q Consensus 41 ~~ls~~~g~~~vL~~Isl~i~~ge~~~IIGI~GpSGSGKSTLak~L~~lL-p~~g~I~lDg~~~~-----~~~i~~vfq~ 114 (660)
++++..+|.+.+++++||.+++|+ ++++.|||||||||++++|+|+. |+.|.|.++|.... .+.++++||+
T Consensus 9 ~~v~k~yg~~~av~~isl~i~~Ge---f~~lLGPSGcGKTTlLR~IAGfe~p~~G~I~l~G~~i~~lpp~kR~ig~VFQ~ 85 (352)
T COG3842 9 RNVSKSFGDFTAVDDISLDIKKGE---FVTLLGPSGCGKTTLLRMIAGFEQPSSGEILLDGEDITDVPPEKRPIGMVFQS 85 (352)
T ss_pred EeeeeecCCeeEEecceeeecCCc---EEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEECCCCChhhcccceeecC
Confidence 345555578999999999999999 99999999999999999999998 99999999997543 3779999999
Q ss_pred CCCCchhhHHHHHHhhhc-Cc-----c-----------ccc-ccccccccccccceeeecCCccEEEEecceeecccccC
Q 006117 115 PRLTDYDTLLENIRGLKE-GK-----A-----------VQV-PIYDFKSSSRIGYRTLEVPSSRIVIIEGIYALSEKLRP 176 (660)
Q Consensus 115 p~l~d~~tl~e~L~~L~~-Gk-----~-----------I~~-PiyD~s~~~rs~~~~~~v~~a~VVIVEGilaL~deLr~ 176 (660)
..+|+++++.+|++.-.. .+ . +.. ..-+...++.++++.++++.++.++.++.+++.||+..
T Consensus 86 YALFPHltV~~NVafGLk~~~~~~~~~i~~rv~e~L~lV~L~~~~~R~p~qLSGGQqQRVALARAL~~~P~vLLLDEPlS 165 (352)
T COG3842 86 YALFPHMTVEENVAFGLKVRKKLKKAEIKARVEEALELVGLEGFADRKPHQLSGGQQQRVALARALVPEPKVLLLDEPLS 165 (352)
T ss_pred cccCCCCcHHHHhhhhhhhcCCCCHHHHHHHHHHHHHHcCchhhhhhChhhhChHHHHHHHHHHHhhcCcchhhhcCccc
Confidence 999999999999976332 11 0 111 12355567788899999999999999999999999999
Q ss_pred CCCEE
Q 006117 177 LIDLR 181 (660)
Q Consensus 177 llDlk 181 (660)
.+|.+
T Consensus 166 aLD~k 170 (352)
T COG3842 166 ALDAK 170 (352)
T ss_pred chhHH
Confidence 99874
No 28
>COG1116 TauB ABC-type nitrate/sulfonate/bicarbonate transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=99.68 E-value=2.2e-17 Score=168.67 Aligned_cols=168 Identities=19% Similarity=0.196 Sum_probs=128.5
Q ss_pred ceeeeecCceEEEEecceeeccCCcceEEEEECCCCCcHHHHHHHHHHhC-CCceEEEecCccc--ccccccccCCCCCC
Q 006117 41 DTLSFEKGFFIVIRACQLLAQKNHGIILVGVAGPSGAGKTVFTEKVLNFM-PSIAVITMDNYND--SSRIIDGNFDDPRL 117 (660)
Q Consensus 41 ~~ls~~~g~~~vL~~Isl~i~~ge~~~IIGI~GpSGSGKSTLak~L~~lL-p~~g~I~lDg~~~--~~~~i~~vfq~p~l 117 (660)
++++..++.+.+|++++|.+.+|+ +|+|+||||||||||+++|+++. |+.|.|.++|... ....++++||++.+
T Consensus 7 ~~v~~~f~~~~vl~~i~L~v~~GE---fvsilGpSGcGKSTLLriiAGL~~p~~G~V~~~g~~v~~p~~~~~~vFQ~~~L 83 (248)
T COG1116 7 EGVSKSFGGVEVLEDINLSVEKGE---FVAILGPSGCGKSTLLRLIAGLEKPTSGEVLLDGRPVTGPGPDIGYVFQEDAL 83 (248)
T ss_pred EeeEEEeCceEEeccceeEECCCC---EEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCcccCCCCCCEEEEeccCcc
Confidence 455566677999999999999999 99999999999999999999998 8999999999864 33568999999999
Q ss_pred CchhhHHHHHHhhhcCcc----------------ccc-ccccccccccccceeeecCCccEEEEecceeecccccCCCCE
Q 006117 118 TDYDTLLENIRGLKEGKA----------------VQV-PIYDFKSSSRIGYRTLEVPSSRIVIIEGIYALSEKLRPLIDL 180 (660)
Q Consensus 118 ~d~~tl~e~L~~L~~Gk~----------------I~~-PiyD~s~~~rs~~~~~~v~~a~VVIVEGilaL~deLr~llDl 180 (660)
++|.++.+|+..-..... +-. ..-+...++.+++++++++.++.++.++.+++.||++..+|.
T Consensus 84 lPW~Tv~~NV~l~l~~~~~~~~e~~~~a~~~L~~VgL~~~~~~~P~qLSGGMrQRVaiARAL~~~P~lLLlDEPFgALDa 163 (248)
T COG1116 84 LPWLTVLDNVALGLELRGKSKAEARERAKELLELVGLAGFEDKYPHQLSGGMRQRVAIARALATRPKLLLLDEPFGALDA 163 (248)
T ss_pred cchhhHHhhheehhhccccchHhHHHHHHHHHHHcCCcchhhcCccccChHHHHHHHHHHHHhcCCCEEEEcCCcchhhH
Confidence 999999999864322110 111 123455677888999999999999999999999999999986
Q ss_pred EEEEEcChhHHHHHHHHHHHHHhCCCHHHHHHHHHhc
Q 006117 181 RVSVTGGVHFDLVKRVFRDIQRVGQEPEEIIHQISET 217 (660)
Q Consensus 181 kIfVdad~dirLiRRI~RDv~eRGrs~E~Vl~qy~~~ 217 (660)
. .-..+...+.+-+.+.+.|.--|.|.+.+.
T Consensus 164 l------TR~~lq~~l~~lw~~~~~TvllVTHdi~EA 194 (248)
T COG1116 164 L------TREELQDELLRLWEETRKTVLLVTHDVDEA 194 (248)
T ss_pred H------HHHHHHHHHHHHHHhhCCEEEEEeCCHHHH
Confidence 2 222333444444555566655555544433
No 29
>COG3839 MalK ABC-type sugar transport systems, ATPase components [Carbohydrate transport and metabolism]
Probab=99.66 E-value=2.2e-17 Score=176.39 Aligned_cols=138 Identities=22% Similarity=0.233 Sum_probs=115.1
Q ss_pred ceeeeecCceEEEEecceeeccCCcceEEEEECCCCCcHHHHHHHHHHhC-CCceEEEecCcccc-----cccccccCCC
Q 006117 41 DTLSFEKGFFIVIRACQLLAQKNHGIILVGVAGPSGAGKTVFTEKVLNFM-PSIAVITMDNYNDS-----SRIIDGNFDD 114 (660)
Q Consensus 41 ~~ls~~~g~~~vL~~Isl~i~~ge~~~IIGI~GpSGSGKSTLak~L~~lL-p~~g~I~lDg~~~~-----~~~i~~vfq~ 114 (660)
+++...+|...+++++++.++.|+ ++.|+|||||||||++++|+++. |+.|.|.+||.... .+.++++||+
T Consensus 7 ~~v~K~yg~~~~l~~i~l~i~~Ge---f~vllGPSGcGKSTlLr~IAGLe~~~~G~I~i~g~~vt~l~P~~R~iamVFQ~ 83 (338)
T COG3839 7 KNVRKSFGSFEVLKDVNLDIEDGE---FVVLLGPSGCGKSTLLRMIAGLEEPTSGEILIDGRDVTDLPPEKRGIAMVFQN 83 (338)
T ss_pred eeeEEEcCCceeeecceEEEcCCC---EEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEECCCCChhHCCEEEEeCC
Confidence 445555576559999999999999 99999999999999999999998 89999999998543 3789999999
Q ss_pred CCCCchhhHHHHHHh-hhcCc----cc-----------c-cccccccccccccceeeecCCccEEEEecceeecccccCC
Q 006117 115 PRLTDYDTLLENIRG-LKEGK----AV-----------Q-VPIYDFKSSSRIGYRTLEVPSSRIVIIEGIYALSEKLRPL 177 (660)
Q Consensus 115 p~l~d~~tl~e~L~~-L~~Gk----~I-----------~-~PiyD~s~~~rs~~~~~~v~~a~VVIVEGilaL~deLr~l 177 (660)
+.+|+.+++.+|+.. |+..+ .+ . ....++...+.++++.++++.++.++-++.+.+.||+...
T Consensus 84 yALyPhmtV~~Niaf~Lk~~~~~k~ei~~rV~eva~~L~l~~lL~r~P~~LSGGQrQRVAlaRAlVr~P~v~L~DEPlSn 163 (338)
T COG3839 84 YALYPHMTVYENIAFGLKLRGVPKAEIDKRVKEVAKLLGLEHLLNRKPLQLSGGQRQRVALARALVRKPKVFLLDEPLSN 163 (338)
T ss_pred ccccCCCcHHHHhhhhhhhCCCchHHHHHHHHHHHHHcCChhHHhcCcccCChhhHHHHHHHHHHhcCCCEEEecCchhH
Confidence 999999999999975 33221 11 1 1235666777888999999999999999999999999999
Q ss_pred CCEE
Q 006117 178 IDLR 181 (660)
Q Consensus 178 lDlk 181 (660)
+|.+
T Consensus 164 LDa~ 167 (338)
T COG3839 164 LDAK 167 (338)
T ss_pred hhHH
Confidence 9863
No 30
>COG1118 CysA ABC-type sulfate/molybdate transport systems, ATPase component [Inorganic ion transport and metabolism]
Probab=99.66 E-value=3.2e-17 Score=171.11 Aligned_cols=136 Identities=21% Similarity=0.215 Sum_probs=112.4
Q ss_pred eeeecCceEEEEecceeeccCCcceEEEEECCCCCcHHHHHHHHHHhC-CCceEEEecCc---c-----cccccccccCC
Q 006117 43 LSFEKGFFIVIRACQLLAQKNHGIILVGVAGPSGAGKTVFTEKVLNFM-PSIAVITMDNY---N-----DSSRIIDGNFD 113 (660)
Q Consensus 43 ls~~~g~~~vL~~Isl~i~~ge~~~IIGI~GpSGSGKSTLak~L~~lL-p~~g~I~lDg~---~-----~~~~~i~~vfq 113 (660)
.+...+.+.++++|++.++.|+ ++++.|||||||||++++|+|+. |+.|.|.++|. + ...+.++++||
T Consensus 8 ~~~~~~~~~a~~di~l~i~~Ge---~vaLlGpSGaGKsTlLRiIAGLe~p~~G~I~~~~~~l~D~~~~~~~~R~VGfvFQ 84 (345)
T COG1118 8 VKKRFGAFGALDDISLDIKSGE---LVALLGPSGAGKSTLLRIIAGLETPDAGRIRLNGRVLFDVSNLAVRDRKVGFVFQ 84 (345)
T ss_pred hhhhcccccccccceeeecCCc---EEEEECCCCCcHHHHHHHHhCcCCCCCceEEECCEeccchhccchhhcceeEEEe
Confidence 3444578889999999999999 99999999999999999999998 99999999997 2 23467999999
Q ss_pred CCCCCchhhHHHHHHhhhcCc---c----c-----------cc-ccccccccccccceeeecCCccEEEEecceeecccc
Q 006117 114 DPRLTDYDTLLENIRGLKEGK---A----V-----------QV-PIYDFKSSSRIGYRTLEVPSSRIVIIEGIYALSEKL 174 (660)
Q Consensus 114 ~p~l~d~~tl~e~L~~L~~Gk---~----I-----------~~-PiyD~s~~~rs~~~~~~v~~a~VVIVEGilaL~deL 174 (660)
|+.+|+.+++.+|++.-..-. + + .. ..-+....+.++++.++++.++.+.+|+..++.||+
T Consensus 85 ~YALF~HmtVa~NIAFGl~~~~~~p~~~~~r~rv~elL~lvqL~~la~ryP~QLSGGQrQRVALARALA~eP~vLLLDEP 164 (345)
T COG1118 85 HYALFPHMTVADNIAFGLKVRKERPSEAEIRARVEELLRLVQLEGLADRYPAQLSGGQRQRVALARALAVEPKVLLLDEP 164 (345)
T ss_pred chhhcccchHHhhhhhcccccccCCChhhHHHHHHHHHHHhcccchhhcCchhcChHHHHHHHHHHHhhcCCCeEeecCC
Confidence 999999999999998633211 0 0 00 112444567788899999999999999999999999
Q ss_pred cCCCCEE
Q 006117 175 RPLIDLR 181 (660)
Q Consensus 175 r~llDlk 181 (660)
+..+|.+
T Consensus 165 f~ALDa~ 171 (345)
T COG1118 165 FGALDAK 171 (345)
T ss_pred chhhhHH
Confidence 9999863
No 31
>COG1136 SalX ABC-type antimicrobial peptide transport system, ATPase component [Defense mechanisms]
Probab=99.65 E-value=8e-17 Score=163.54 Aligned_cols=144 Identities=19% Similarity=0.242 Sum_probs=116.1
Q ss_pred eeeeeccceeeeecCceEEEEecceeeccCCcceEEEEECCCCCcHHHHHHHHHHhC-CCceEEEecCcccc--------
Q 006117 34 YEIVPIEDTLSFEKGFFIVIRACQLLAQKNHGIILVGVAGPSGAGKTVFTEKVLNFM-PSIAVITMDNYNDS-------- 104 (660)
Q Consensus 34 ~ei~~~~~~ls~~~g~~~vL~~Isl~i~~ge~~~IIGI~GpSGSGKSTLak~L~~lL-p~~g~I~lDg~~~~-------- 104 (660)
+++..+.+.+........+|++++|.+++|+ +++|+||||||||||+++|.++. |+.|.+.++|.+..
T Consensus 2 i~~~~v~k~y~~~~~~~~~L~~v~l~i~~Ge---~vaI~GpSGSGKSTLLniig~ld~pt~G~v~i~g~d~~~l~~~~~~ 78 (226)
T COG1136 2 IELKNVSKIYGLGGEKVEALKDVNLEIEAGE---FVAIVGPSGSGKSTLLNLLGGLDKPTSGEVLINGKDLTKLSEKELA 78 (226)
T ss_pred cEEeeeEEEeccCCcceEecccceEEEcCCC---EEEEECCCCCCHHHHHHHHhcccCCCCceEEECCEEcCcCCHHHHH
Confidence 3455666777655555789999999999999 99999999999999999999998 99999999995432
Q ss_pred ---cccccccCCCCCCCchhhHHHHHHh--hhcCcc----------------cccccccccccccccceeeecCCccEEE
Q 006117 105 ---SRIIDGNFDDPRLTDYDTLLENIRG--LKEGKA----------------VQVPIYDFKSSSRIGYRTLEVPSSRIVI 163 (660)
Q Consensus 105 ---~~~i~~vfq~p~l~d~~tl~e~L~~--L~~Gk~----------------I~~PiyD~s~~~rs~~~~~~v~~a~VVI 163 (660)
.+.++++||++++++.+++.||+.. ...+.. +.....++..++.+++++++++.++.++
T Consensus 79 ~~R~~~iGfvFQ~~nLl~~ltv~ENv~lpl~~~~~~~~~~~~~~~~l~~~lgl~~~~~~~~p~eLSGGqqQRVAIARAL~ 158 (226)
T COG1136 79 KLRRKKIGFVFQNFNLLPDLTVLENVELPLLIAGKSAGRRKRAAEELLEVLGLEDRLLKKKPSELSGGQQQRVAIARALI 158 (226)
T ss_pred HHHHHhEEEECccCCCCCCCCHHHHHHhHHHHcCCChhHHHHHHHHHHHhcCChhhhccCCchhcCHHHHHHHHHHHHHh
Confidence 1458999999999999999999873 111111 1111222445677889999999999999
Q ss_pred EecceeecccccCCCCE
Q 006117 164 IEGIYALSEKLRPLIDL 180 (660)
Q Consensus 164 VEGilaL~deLr~llDl 180 (660)
-++.+++.|||...+|.
T Consensus 159 ~~P~iilADEPTgnLD~ 175 (226)
T COG1136 159 NNPKIILADEPTGNLDS 175 (226)
T ss_pred cCCCeEEeeCccccCCh
Confidence 99999999999999997
No 32
>COG1127 Ttg2A ABC-type transport system involved in resistance to organic solvents, ATPase component [Secondary metabolites biosynthesis, transport, and catabolism]
Probab=99.64 E-value=2.1e-16 Score=160.44 Aligned_cols=197 Identities=16% Similarity=0.225 Sum_probs=146.4
Q ss_pred eccceeeeecCceEEEEecceeeccCCcceEEEEECCCCCcHHHHHHHHHHhC-CCceEEEecCccccc----------c
Q 006117 38 PIEDTLSFEKGFFIVIRACQLLAQKNHGIILVGVAGPSGAGKTVFTEKVLNFM-PSIAVITMDNYNDSS----------R 106 (660)
Q Consensus 38 ~~~~~ls~~~g~~~vL~~Isl~i~~ge~~~IIGI~GpSGSGKSTLak~L~~lL-p~~g~I~lDg~~~~~----------~ 106 (660)
...+++++.+|...++++++|.+++|+ +.||+||||||||||++.|.+++ |+.|.|.++|.+... +
T Consensus 9 I~vr~v~~~fG~~~Ild~v~l~V~~Ge---i~~iiGgSGsGKStlLr~I~Gll~P~~GeI~i~G~~i~~ls~~~~~~ir~ 85 (263)
T COG1127 9 IEVRGVTKSFGDRVILDGVDLDVPRGE---ILAILGGSGSGKSTLLRLILGLLRPDKGEILIDGEDIPQLSEEELYEIRK 85 (263)
T ss_pred EEEeeeeeecCCEEEecCceeeecCCc---EEEEECCCCcCHHHHHHHHhccCCCCCCeEEEcCcchhccCHHHHHHHHh
Confidence 444667778899999999999999999 99999999999999999999999 899999999986432 4
Q ss_pred cccccCCCCCCCchhhHHHHHHh-hhcCc----------------cccc-cc-ccccccccccceeeecCCccEEEEecc
Q 006117 107 IIDGNFDDPRLTDYDTLLENIRG-LKEGK----------------AVQV-PI-YDFKSSSRIGYRTLEVPSSRIVIIEGI 167 (660)
Q Consensus 107 ~i~~vfq~p~l~d~~tl~e~L~~-L~~Gk----------------~I~~-Pi-yD~s~~~rs~~~~~~v~~a~VVIVEGi 167 (660)
.++++||+-.+|+.+++.||+.. +++.. .+-. +. .+.-..+.+++...+++.++.+..++.
T Consensus 86 r~GvlFQ~gALFssltV~eNVafplre~~~lp~~~i~~lv~~KL~~VGL~~~~~~~~PsELSGGM~KRvaLARAialdPe 165 (263)
T COG1127 86 RMGVLFQQGALFSSLTVFENVAFPLREHTKLPESLIRELVLMKLELVGLRGAAADLYPSELSGGMRKRVALARAIALDPE 165 (263)
T ss_pred heeEEeeccccccccchhHhhheehHhhccCCHHHHHHHHHHHHHhcCCChhhhhhCchhhcchHHHHHHHHHHHhcCCC
Confidence 58899999999999999999974 22211 1111 22 566667778888888999999999999
Q ss_pred eeecccccCCCCEEEEEEcChhHHHHHHHHHHHHHhCCCHHHHHHHHHhccccchhhcccCCcCcCcEEEeCCCCCCCCC
Q 006117 168 YALSEKLRPLIDLRVSVTGGVHFDLVKRVFRDIQRVGQEPEEIIHQISETVYPMYKAFIEPDLQTAHIKIINKFNPFTGF 247 (660)
Q Consensus 168 laL~deLr~llDlkIfVdad~dirLiRRI~RDv~eRGrs~E~Vl~qy~~~v~P~~~~fIeP~k~~ADiII~N~~~p~~g~ 247 (660)
++|+||+...+|.. .+..-..|++++++.. |.| -++|.++.+.....
T Consensus 166 ll~~DEPtsGLDPI---~a~~~~~LI~~L~~~l---g~T---------------------------~i~VTHDl~s~~~i 212 (263)
T COG1127 166 LLFLDEPTSGLDPI---SAGVIDELIRELNDAL---GLT---------------------------VIMVTHDLDSLLTI 212 (263)
T ss_pred EEEecCCCCCCCcc---hHHHHHHHHHHHHHhh---CCE---------------------------EEEEECChHHHHhh
Confidence 99999999999973 3333334444444331 333 45555555555566
Q ss_pred CCceEEeccCCCccHHHHHHHhc
Q 006117 248 QNPTYILKSTRPVTVDEIKAVMS 270 (660)
Q Consensus 248 ~n~v~iLKsa~~v~~~~IravL~ 270 (660)
++.+++|..++.+..+...+.+.
T Consensus 213 ~Drv~~L~~gkv~~~Gt~~el~~ 235 (263)
T COG1127 213 ADRVAVLADGKVIAEGTPEELLA 235 (263)
T ss_pred hceEEEEeCCEEEEeCCHHHHHh
Confidence 67777777766554444444443
No 33
>COG1124 DppF ABC-type dipeptide/oligopeptide/nickel transport system, ATPase component [Amino acid transport and metabolism / Inorganic ion transport and metabolism]
Probab=99.63 E-value=3.2e-16 Score=159.34 Aligned_cols=144 Identities=19% Similarity=0.245 Sum_probs=114.9
Q ss_pred eeeeeccceeeeecCceEEEEecceeeccCCcceEEEEECCCCCcHHHHHHHHHHhC-CCceEEEecCccccc-------
Q 006117 34 YEIVPIEDTLSFEKGFFIVIRACQLLAQKNHGIILVGVAGPSGAGKTVFTEKVLNFM-PSIAVITMDNYNDSS------- 105 (660)
Q Consensus 34 ~ei~~~~~~ls~~~g~~~vL~~Isl~i~~ge~~~IIGI~GpSGSGKSTLak~L~~lL-p~~g~I~lDg~~~~~------- 105 (660)
.++.++...|......++++++|||.+.+|+ ++||+|+||||||||+++|+++. |+.|.|.++|.....
T Consensus 4 l~v~nl~~~y~~~~~~~~~l~~VS~~i~~Ge---~lgivGeSGsGKSTL~r~l~Gl~~p~~G~I~~~G~~~~~~~~~~~~ 80 (252)
T COG1124 4 LSVRNLSIVYGGGKFAFHALNNVSLEIERGE---TLGIVGESGSGKSTLARLLAGLEKPSSGSILLDGKPLAPKKRAKAF 80 (252)
T ss_pred EEEeceEEEecCCcchhhhhcceeEEecCCC---EEEEEcCCCCCHHHHHHHHhcccCCCCceEEECCcccCccccchhh
Confidence 3444444444333334469999999999999 99999999999999999999998 899999999964332
Q ss_pred -ccccccCCCCC--CCchhhHHHHHHhhhcC--------------cccccc--cccccccccccceeeecCCccEEEEec
Q 006117 106 -RIIDGNFDDPR--LTDYDTLLENIRGLKEG--------------KAVQVP--IYDFKSSSRIGYRTLEVPSSRIVIIEG 166 (660)
Q Consensus 106 -~~i~~vfq~p~--l~d~~tl~e~L~~L~~G--------------k~I~~P--iyD~s~~~rs~~~~~~v~~a~VVIVEG 166 (660)
+.+.++||||. +.++.++.+.|..-..- +.+..| .++...++.++++.++++.++.++.|+
T Consensus 81 ~~~VQmVFQDp~~SLnP~~tv~~~l~Epl~~~~~~~~~~~i~~~L~~VgL~~~~l~R~P~eLSGGQ~QRiaIARAL~~~P 160 (252)
T COG1124 81 YRPVQMVFQDPYSSLNPRRTVGRILSEPLRPHGLSKSQQRIAELLDQVGLPPSFLDRRPHELSGGQRQRIAIARALIPEP 160 (252)
T ss_pred ccceeEEecCCccccCcchhHHHHHhhhhccCCccHHHHHHHHHHHHcCCCHHHHhcCchhcChhHHHHHHHHHHhccCC
Confidence 45788999984 67888888887642221 123333 577788899999999999999999999
Q ss_pred ceeecccccCCCCE
Q 006117 167 IYALSEKLRPLIDL 180 (660)
Q Consensus 167 ilaL~deLr~llDl 180 (660)
.+++.||+...+|.
T Consensus 161 klLIlDEptSaLD~ 174 (252)
T COG1124 161 KLLILDEPTSALDV 174 (252)
T ss_pred CEEEecCchhhhcH
Confidence 99999999999997
No 34
>TIGR02314 ABC_MetN D-methionine ABC transporter, ATP-binding protein. Members of this family are the ATP-binding protein of the D-methionine ABC transporter complex. Known members belong to the Proteobacteria.
Probab=99.62 E-value=1.6e-16 Score=171.09 Aligned_cols=148 Identities=20% Similarity=0.232 Sum_probs=113.2
Q ss_pred eEEEEecceeeccCCcceEEEEECCCCCcHHHHHHHHHHhC-CCceEEEecCcccc----------cccccccCCCCCCC
Q 006117 50 FIVIRACQLLAQKNHGIILVGVAGPSGAGKTVFTEKVLNFM-PSIAVITMDNYNDS----------SRIIDGNFDDPRLT 118 (660)
Q Consensus 50 ~~vL~~Isl~i~~ge~~~IIGI~GpSGSGKSTLak~L~~lL-p~~g~I~lDg~~~~----------~~~i~~vfq~p~l~ 118 (660)
..+|+++||.+++|+ ++||+|+||||||||+++|++++ |+.|.|.++|.... .+.++++||++.++
T Consensus 18 ~~~L~~vsl~i~~Ge---i~gIiG~sGaGKSTLlr~I~gl~~p~~G~I~i~G~~i~~~~~~~l~~~r~~Ig~v~Q~~~l~ 94 (343)
T TIGR02314 18 IQALNNVSLHVPAGQ---IYGVIGASGAGKSTLIRCVNLLERPTSGSVIVDGQDLTTLSNSELTKARRQIGMIFQHFNLL 94 (343)
T ss_pred eEEEeeeEEEEcCCC---EEEEECCCCCCHHHHHHHHhcCCCCCceEEEECCEECCcCCHHHHHHHhcCEEEEECCcccc
Confidence 579999999999999 99999999999999999999998 89999999997432 23589999999999
Q ss_pred chhhHHHHHHhhhc--Cc--------------cccc-ccccccccccccceeeecCCccEEEEecceeecccccCCCCEE
Q 006117 119 DYDTLLENIRGLKE--GK--------------AVQV-PIYDFKSSSRIGYRTLEVPSSRIVIIEGIYALSEKLRPLIDLR 181 (660)
Q Consensus 119 d~~tl~e~L~~L~~--Gk--------------~I~~-PiyD~s~~~rs~~~~~~v~~a~VVIVEGilaL~deLr~llDlk 181 (660)
+..++.+|+..-.. +. .+.. ...+......++++.+++..++.++.++.+++.||+...+|.
T Consensus 95 ~~~tv~eni~~~~~~~~~~~~~~~~~v~e~l~~vgL~~~~~~~~~~LSgGqkQRV~IARAL~~~P~iLLlDEPts~LD~- 173 (343)
T TIGR02314 95 SSRTVFGNVALPLELDNTPKDEIKRKVTELLALVGLGDKHDSYPSNLSGGQKQRVAIARALASNPKVLLCDEATSALDP- 173 (343)
T ss_pred ccCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCchhhhCChhhCCHHHHHHHHHHHHHHhCCCEEEEeCCcccCCH-
Confidence 98999999864221 10 0111 112334455677888889999999999999999999999997
Q ss_pred EEEEcChhHHHHHHHHHHHHH-hCCCH
Q 006117 182 VSVTGGVHFDLVKRVFRDIQR-VGQEP 207 (660)
Q Consensus 182 IfVdad~dirLiRRI~RDv~e-RGrs~ 207 (660)
.....+..+.+++.+ .|.+.
T Consensus 174 ------~t~~~i~~lL~~l~~~~g~ti 194 (343)
T TIGR02314 174 ------ATTQSILELLKEINRRLGLTI 194 (343)
T ss_pred ------HHHHHHHHHHHHHHHhcCCEE
Confidence 344444555555443 25443
No 35
>PRK06547 hypothetical protein; Provisional
Probab=99.61 E-value=2.5e-15 Score=147.03 Aligned_cols=153 Identities=19% Similarity=0.196 Sum_probs=114.3
Q ss_pred CCcceEEEEECCCCCcHHHHHHHHHHhCCCceEEEecCcccccccccccCCCCCCCchhhHHHHHHhhhcCccccccccc
Q 006117 63 NHGIILVGVAGPSGAGKTVFTEKVLNFMPSIAVITMDNYNDSSRIIDGNFDDPRLTDYDTLLENIRGLKEGKAVQVPIYD 142 (660)
Q Consensus 63 ge~~~IIGI~GpSGSGKSTLak~L~~lLp~~g~I~lDg~~~~~~~i~~vfq~p~l~d~~tl~e~L~~L~~Gk~I~~PiyD 142 (660)
+.++.+|+|.|++||||||+++.|++.+ +...+++|+++...... ......+.+.+.. .|+....| ||
T Consensus 12 ~~~~~~i~i~G~~GsGKTt~a~~l~~~~-~~~~~~~d~~~~~~~~~--------~~~~~~l~~~~l~--~g~~~~~~-yd 79 (172)
T PRK06547 12 GGGMITVLIDGRSGSGKTTLAGALAART-GFQLVHLDDLYPGWHGL--------AAASEHVAEAVLD--EGRPGRWR-WD 79 (172)
T ss_pred cCCCEEEEEECCCCCCHHHHHHHHHHHh-CCCeecccceecccccC--------ChHHHHHHHHHHh--CCCCceec-CC
Confidence 4567899999999999999999999987 56688999876432111 0122345555544 67777777 99
Q ss_pred ccccccccceeeecCCccEEEEecceeecccccCCCC-----EEEEEEcChhHHHHHHHHHHHHHhCCCHHHHHHHHHhc
Q 006117 143 FKSSSRIGYRTLEVPSSRIVIIEGIYALSEKLRPLID-----LRVSVTGGVHFDLVKRVFRDIQRVGQEPEEIIHQISET 217 (660)
Q Consensus 143 ~s~~~rs~~~~~~v~~a~VVIVEGilaL~deLr~llD-----lkIfVdad~dirLiRRI~RDv~eRGrs~E~Vl~qy~~~ 217 (660)
+..+.+.. ...+.+.+++|+||.+++.+++++.+| ++|||++|.++|+.|++.||.. . ..|.+.
T Consensus 80 ~~~~~~~~--~~~l~~~~vVIvEG~~al~~~~r~~~d~~g~v~~I~ld~~~~vr~~R~~~Rd~~-----~----~~~~~~ 148 (172)
T PRK06547 80 WANNRPGD--WVSVEPGRRLIIEGVGSLTAANVALASLLGEVLTVWLDGPEALRKERALARDPD-----Y----APHWEM 148 (172)
T ss_pred CCCCCCCC--cEEeCCCCeEEEEehhhccHHHHHHhccCCCEEEEEEECCHHHHHHHHHhcCch-----h----hHHHHH
Confidence 98775533 234567789999999999988999999 9999999999999999999832 2 223345
Q ss_pred cccchhhccc--CCcCcCcEEEe
Q 006117 218 VYPMYKAFIE--PDLQTAHIKII 238 (660)
Q Consensus 218 v~P~~~~fIe--P~k~~ADiII~ 238 (660)
..|..+.|++ +.++.||+|+.
T Consensus 149 w~~~e~~~~~~~~~~~~ad~~~~ 171 (172)
T PRK06547 149 WAAQEERHFARYDPRDVADWLGS 171 (172)
T ss_pred HHHHHHHHHhcCCChhccEEEec
Confidence 5677777765 56899999874
No 36
>PLN03046 D-glycerate 3-kinase; Provisional
Probab=99.60 E-value=6.3e-15 Score=160.66 Aligned_cols=165 Identities=21% Similarity=0.276 Sum_probs=122.3
Q ss_pred CcceEEEEECCCCCcHHHHHHHHHHhC-C---CceEEEecCccccccc---c-cccC--------CCCCCCchhhHHHHH
Q 006117 64 HGIILVGVAGPSGAGKTVFTEKVLNFM-P---SIAVITMDNYNDSSRI---I-DGNF--------DDPRLTDYDTLLENI 127 (660)
Q Consensus 64 e~~~IIGI~GpSGSGKSTLak~L~~lL-p---~~g~I~lDg~~~~~~~---i-~~vf--------q~p~l~d~~tl~e~L 127 (660)
.+|++|||+|++|||||||++.|.+++ + ..+.|++|||+..... . ..++ ..|..+|.....+++
T Consensus 210 ~~PlIIGIsG~qGSGKSTLa~~L~~lL~~~g~~vgvISiDDfYLt~eer~kL~~~nP~n~LL~~RG~PGTHDv~Lg~e~L 289 (460)
T PLN03046 210 IPPLVIGFSAPQGCGKTTLVFALDYLFRVTGRKSATLSIDDFYLTAEGQAELRERNPGNALLELRGNAGSHDLQFSVETL 289 (460)
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHHHhcccCCceEEEEECCccCChHHHHHHHhhCccchhhcccCCCccccHhhHHHHH
Confidence 368999999999999999999999887 3 3889999999864311 1 1112 225677777777777
Q ss_pred Hhh----hcCcccccccccccccc----cccc--eeeecCCccEEEEecceeeccc------------------------
Q 006117 128 RGL----KEGKAVQVPIYDFKSSS----RIGY--RTLEVPSSRIVIIEGIYALSEK------------------------ 173 (660)
Q Consensus 128 ~~L----~~Gk~I~~PiyD~s~~~----rs~~--~~~~v~~a~VVIVEGilaL~de------------------------ 173 (660)
..+ +.|+.+.+|+||+..+. |... ....+.+.+|||+||++++...
T Consensus 290 ~~L~~~lk~G~~V~iP~YDKs~h~GrgDR~~~~~W~~v~~P~DVIIfEGW~vG~~P~~~~~l~~~D~~l~~VN~~L~~Y~ 369 (460)
T PLN03046 290 EALSKLTKEGIKMKVPRYDKSAYSGRGDRADPSTWPEVEGPLEVILFEGWMLGFKPLPNEVVKAVDPQLEVVNKNLEAYY 369 (460)
T ss_pred HHHHHHhhCCCeeecCCCCccccCCCCCCcCcccceeecCCCCEEEEcCHHhCCCCCChHHhhccChhHHHHHHHHHHHH
Confidence 766 57889999999999965 4432 1334578899999999887621
Q ss_pred --ccCCCCEEEEEEcCh-hHHHHHHHHHHHHHh-----CCCHHHHHHHHHhccccchhhcccCC
Q 006117 174 --LRPLIDLRVSVTGGV-HFDLVKRVFRDIQRV-----GQEPEEIIHQISETVYPMYKAFIEPD 229 (660)
Q Consensus 174 --Lr~llDlkIfVdad~-dirLiRRI~RDv~eR-----Grs~E~Vl~qy~~~v~P~~~~fIeP~ 229 (660)
+...+|..|.+.++. +.-+.||++++.+.+ |++.++| .+|.+..+|+|+.|.+..
T Consensus 370 ~~w~~~~D~li~L~a~d~~~Vy~WRlqQE~kLr~~gg~GMsdeqV-~~FV~~YmPaY~~y~~~L 432 (460)
T PLN03046 370 DAWDKFIDAWVVIKIQDPSCVYQWRLQAEIAMRADGKPGMSDEEV-MDFVSRYLPAYKAYLPTL 432 (460)
T ss_pred HHHHHhhceeEEeeCCChhHHHHHHHHHHHHHHHcCCCCCCHHHH-HHHHHHhhhHHHHHHHHH
Confidence 112477778777664 777889999888654 7888886 456688899999887543
No 37
>COG1120 FepC ABC-type cobalamin/Fe3+-siderophores transport systems, ATPase components [Inorganic ion transport and metabolism / Coenzyme metabolism]
Probab=99.60 E-value=6.1e-16 Score=159.91 Aligned_cols=167 Identities=17% Similarity=0.221 Sum_probs=123.8
Q ss_pred eccceeeeecCceEEEEecceeeccCCcceEEEEECCCCCcHHHHHHHHHHhC-CCceEEEecCccccc-------cccc
Q 006117 38 PIEDTLSFEKGFFIVIRACQLLAQKNHGIILVGVAGPSGAGKTVFTEKVLNFM-PSIAVITMDNYNDSS-------RIID 109 (660)
Q Consensus 38 ~~~~~ls~~~g~~~vL~~Isl~i~~ge~~~IIGI~GpSGSGKSTLak~L~~lL-p~~g~I~lDg~~~~~-------~~i~ 109 (660)
...+++++.|+...+++++||.+++|+ +++|+||||||||||+++|++++ |..|.|.+||..... +.++
T Consensus 3 L~~~~ls~~y~~~~il~~ls~~i~~G~---i~~iiGpNG~GKSTLLk~l~g~l~p~~G~V~l~g~~i~~~~~kelAk~ia 79 (258)
T COG1120 3 LEVENLSFGYGGKPILDDLSFSIPKGE---ITGILGPNGSGKSTLLKCLAGLLKPKSGEVLLDGKDIASLSPKELAKKLA 79 (258)
T ss_pred eEEEEEEEEECCeeEEecceEEecCCc---EEEEECCCCCCHHHHHHHHhccCCCCCCEEEECCCchhhcCHHHHhhhEE
Confidence 456788999999999999999999999 99999999999999999999999 799999999975432 5688
Q ss_pred ccCCCCCCCchhhHHHHHHhhhcC----------cc---c-------cc-ccccccccccccceeeecCCccEEEEecce
Q 006117 110 GNFDDPRLTDYDTLLENIRGLKEG----------KA---V-------QV-PIYDFKSSSRIGYRTLEVPSSRIVIIEGIY 168 (660)
Q Consensus 110 ~vfq~p~l~d~~tl~e~L~~L~~G----------k~---I-------~~-PiyD~s~~~rs~~~~~~v~~a~VVIVEGil 168 (660)
|++|.+...+..++.|.+..-+.- ++ + .. ..-++...+.++++.+++-.++++.-+..+
T Consensus 80 ~vpQ~~~~~~~~tV~d~V~~GR~p~~~~~~~~~~~D~~~v~~aL~~~~~~~la~r~~~~LSGGerQrv~iArALaQ~~~i 159 (258)
T COG1120 80 YVPQSPSAPFGLTVYELVLLGRYPHLGLFGRPSKEDEEIVEEALELLGLEHLADRPVDELSGGERQRVLIARALAQETPI 159 (258)
T ss_pred EeccCCCCCCCcEEeehHhhcCCcccccccCCCHhHHHHHHHHHHHhCcHHHhcCcccccChhHHHHHHHHHHHhcCCCE
Confidence 999987766666777666532210 00 0 00 011223445667888888889999999999
Q ss_pred eecccccCCCCEEEEEEcChhHHHHHHHHHHHH-HhCCCHHHHHHHH
Q 006117 169 ALSEKLRPLIDLRVSVTGGVHFDLVKRVFRDIQ-RVGQEPEEIIHQI 214 (660)
Q Consensus 169 aL~deLr~llDlkIfVdad~dirLiRRI~RDv~-eRGrs~E~Vl~qy 214 (660)
++.||+...+|+. .-..+. .+.|+.. ++|.+.-.++|..
T Consensus 160 LLLDEPTs~LDi~------~Q~evl-~ll~~l~~~~~~tvv~vlHDl 199 (258)
T COG1120 160 LLLDEPTSHLDIA------HQIEVL-ELLRDLNREKGLTVVMVLHDL 199 (258)
T ss_pred EEeCCCccccCHH------HHHHHH-HHHHHHHHhcCCEEEEEecCH
Confidence 9999999999984 333333 3444443 5687765555544
No 38
>COG1072 CoaA Panthothenate kinase [Coenzyme metabolism]
Probab=99.60 E-value=7e-15 Score=152.06 Aligned_cols=178 Identities=20% Similarity=0.261 Sum_probs=134.5
Q ss_pred eccCCcceEEEEECCCCCcHHHHHHHHHHhC------CCceEEEecCcccccc-----cccccCCCCCCCchhhHHHHHH
Q 006117 60 AQKNHGIILVGVAGPSGAGKTVFTEKVLNFM------PSIAVITMDNYNDSSR-----IIDGNFDDPRLTDYDTLLENIR 128 (660)
Q Consensus 60 i~~ge~~~IIGI~GpSGSGKSTLak~L~~lL------p~~g~I~lDg~~~~~~-----~i~~vfq~p~l~d~~tl~e~L~ 128 (660)
...++.|++|||+|+.|+||||+++.|..++ |.+..|.+|||..... ..----..|..||...+.+.+.
T Consensus 76 ~~~~~~pfIIgiaGsvavGKST~ar~L~~ll~~~~~~~~v~lvpmDGFhy~n~~L~~~glm~rKGfPeSyD~~~ll~fl~ 155 (283)
T COG1072 76 TNNQQRPFIIGIAGSVAVGKSTTARILQALLSRWPESPKVDLVTMDGFHYPNAVLDERGLMARKGFPESYDVAALLRFLS 155 (283)
T ss_pred cCCCCCCEEEEeccCccccHHHHHHHHHHHHhhCCCCCceEEEeccccccCHhHhhhccccccCCCCccccHHHHHHHHH
Confidence 3556779999999999999999999999987 2467899999965432 1111234688999999999999
Q ss_pred hhhcCcc-cccccccccccccccceeeecCCccEEEEecceeecc-----cccCCCCEEEEEEcChhHHHHHHHHHHHHH
Q 006117 129 GLKEGKA-VQVPIYDFKSSSRIGYRTLEVPSSRIVIIEGIYALSE-----KLRPLIDLRVSVTGGVHFDLVKRVFRDIQR 202 (660)
Q Consensus 129 ~L~~Gk~-I~~PiyD~s~~~rs~~~~~~v~~a~VVIVEGilaL~d-----eLr~llDlkIfVdad~dirLiRRI~RDv~e 202 (660)
.+++|++ +..|+||+.+++.++++...+...+++|+||+++|.+ .+.+.||+.||||++.+.-..|-+.|- ..
T Consensus 156 ~vK~~~~~v~aPvysh~~yD~vpd~~~v~~~pdIlI~EG~nvLq~~~p~~~~sdffDfSIyvDa~~~~le~wyi~Rf-l~ 234 (283)
T COG1072 156 DVKAGKPDVFAPVYSHLIYDPVPDAFQVVPQPDILIVEGNNVLQDGEPWLFLSDFFDFSIYVDADEELLEERYIERF-LK 234 (283)
T ss_pred HHhcCCCccccccccccccccCCCceeecCCCCEEEEechhhhcCCCccccccccceEEEEecCCHHHHHHHHHHHH-Hh
Confidence 9998766 9999999999999988888889999999999999984 367899999999999877444444444 44
Q ss_pred hCCCHHHHHHHHHhccccchhhcccCCcCcCcEEEeC
Q 006117 203 VGQEPEEIIHQISETVYPMYKAFIEPDLQTAHIKIIN 239 (660)
Q Consensus 203 RGrs~E~Vl~qy~~~v~P~~~~fIeP~k~~ADiII~N 239 (660)
.|.+.....+.|..+..|+-+.-.. ..+.++..+.|
T Consensus 235 ~g~~a~~~~~~~~~~~~~~~~~~a~-~~a~~~w~~in 270 (283)
T COG1072 235 FGLTAFEDPASYFHNYAPLSEREAI-ESARAIWDNIN 270 (283)
T ss_pred cccchhhChhhHhhccCcchHHHHH-Hhhhhcceeeh
Confidence 5777777777776665555443221 23344444443
No 39
>COG1125 OpuBA ABC-type proline/glycine betaine transport systems, ATPase components [Amino acid transport and metabolism]
Probab=99.58 E-value=9.9e-16 Score=156.60 Aligned_cols=166 Identities=20% Similarity=0.183 Sum_probs=128.7
Q ss_pred ceeeeecCceEEEEecceeeccCCcceEEEEECCCCCcHHHHHHHHHHhC-CCceEEEecCccccc-------ccccccC
Q 006117 41 DTLSFEKGFFIVIRACQLLAQKNHGIILVGVAGPSGAGKTVFTEKVLNFM-PSIAVITMDNYNDSS-------RIIDGNF 112 (660)
Q Consensus 41 ~~ls~~~g~~~vL~~Isl~i~~ge~~~IIGI~GpSGSGKSTLak~L~~lL-p~~g~I~lDg~~~~~-------~~i~~vf 112 (660)
+++++.++.+.++++++|.++.|+ ++.++|||||||||++++|.+++ |+.|.|.++|..... +.++|+.
T Consensus 5 ~nvsk~y~~~~av~~v~l~I~~ge---f~vliGpSGsGKTTtLkMINrLiept~G~I~i~g~~i~~~d~~~LRr~IGYvi 81 (309)
T COG1125 5 ENVSKRYGNKKAVDDVNLTIEEGE---FLVLIGPSGSGKTTTLKMINRLIEPTSGEILIDGEDISDLDPVELRRKIGYVI 81 (309)
T ss_pred eeeehhcCCceeeeeeeEEecCCe---EEEEECCCCCcHHHHHHHHhcccCCCCceEEECCeecccCCHHHHHHhhhhhh
Confidence 344555578899999999999999 99999999999999999999999 999999999985432 6799999
Q ss_pred CCCCCCchhhHHHHHHhhhcCc----------------cccc-c--cccccccccccceeeecCCccEEEEecceeeccc
Q 006117 113 DDPRLTDYDTLLENIRGLKEGK----------------AVQV-P--IYDFKSSSRIGYRTLEVPSSRIVIIEGIYALSEK 173 (660)
Q Consensus 113 q~p~l~d~~tl~e~L~~L~~Gk----------------~I~~-P--iyD~s~~~rs~~~~~~v~~a~VVIVEGilaL~de 173 (660)
|...+|+++++.+|+.....-. -+.. | ..++..++.++++.+++.-++.+..++.+++.||
T Consensus 82 QqigLFPh~Tv~eNIa~VP~L~~w~k~~i~~r~~ELl~lvgL~p~~~~~RyP~eLSGGQQQRVGv~RALAadP~ilLMDE 161 (309)
T COG1125 82 QQIGLFPHLTVAENIATVPKLLGWDKERIKKRADELLDLVGLDPSEYADRYPHELSGGQQQRVGVARALAADPPILLMDE 161 (309)
T ss_pred hhcccCCCccHHHHHHhhhhhcCCCHHHHHHHHHHHHHHhCCCHHHHhhcCchhcCcchhhHHHHHHHHhcCCCeEeecC
Confidence 9999999999999997433211 1222 2 2456677888999999999999999999999999
Q ss_pred ccCCCCEEEEEEcChhHHHHHHHHHHHHHhCCCHHHHHHHHH
Q 006117 174 LRPLIDLRVSVTGGVHFDLVKRVFRDIQRVGQEPEEIIHQIS 215 (660)
Q Consensus 174 Lr~llDlkIfVdad~dirLiRRI~RDv~eRGrs~E~Vl~qy~ 215 (660)
++..+|.. .-..+...+.+-.++-|.|.--|.|.+.
T Consensus 162 PFgALDpI------~R~~lQ~e~~~lq~~l~kTivfVTHDid 197 (309)
T COG1125 162 PFGALDPI------TRKQLQEEIKELQKELGKTIVFVTHDID 197 (309)
T ss_pred CccccChh------hHHHHHHHHHHHHHHhCCEEEEEecCHH
Confidence 99999963 1222333344444455776655555553
No 40
>COG1121 ZnuC ABC-type Mn/Zn transport systems, ATPase component [Inorganic ion transport and metabolism]
Probab=99.54 E-value=5.5e-15 Score=152.34 Aligned_cols=165 Identities=17% Similarity=0.153 Sum_probs=119.7
Q ss_pred eccceeeeecCceEEEEecceeeccCCcceEEEEECCCCCcHHHHHHHHHHhC-CCceEEEecCcccc----cccccccC
Q 006117 38 PIEDTLSFEKGFFIVIRACQLLAQKNHGIILVGVAGPSGAGKTVFTEKVLNFM-PSIAVITMDNYNDS----SRIIDGNF 112 (660)
Q Consensus 38 ~~~~~ls~~~g~~~vL~~Isl~i~~ge~~~IIGI~GpSGSGKSTLak~L~~lL-p~~g~I~lDg~~~~----~~~i~~vf 112 (660)
...+++++.++...||++|+|.+++|+ +++|+||||||||||++.|.+++ |..|.|.+.+.... ...++|++
T Consensus 5 i~v~nl~v~y~~~~vl~~i~l~v~~G~---~~~iiGPNGaGKSTLlK~iLGll~p~~G~i~~~g~~~~~~~~~~~IgYVP 81 (254)
T COG1121 5 IEVENLTVSYGNRPVLEDISLSVEKGE---ITALIGPNGAGKSTLLKAILGLLKPSSGEIKIFGKPVRKRRKRLRIGYVP 81 (254)
T ss_pred EEEeeeEEEECCEeeeeccEEEEcCCc---EEEEECCCCCCHHHHHHHHhCCCcCCcceEEEccccccccccCCeEEEcC
Confidence 344666777775579999999999999 99999999999999999999988 89999999987432 24689999
Q ss_pred CCC--CCCchhhHHHHHHhhhcCcc--------------------ccc-ccccccccccccceeeecCCccEEEEeccee
Q 006117 113 DDP--RLTDYDTLLENIRGLKEGKA--------------------VQV-PIYDFKSSSRIGYRTLEVPSSRIVIIEGIYA 169 (660)
Q Consensus 113 q~p--~l~d~~tl~e~L~~L~~Gk~--------------------I~~-PiyD~s~~~rs~~~~~~v~~a~VVIVEGila 169 (660)
|.. +.-...++.+.+..-.-++. +.. -..+...+..++++.+++-.++.++-++.++
T Consensus 82 Q~~~~d~~fP~tV~d~V~~g~~~~~g~~~~~~~~d~~~v~~aL~~Vgm~~~~~r~i~~LSGGQ~QRV~lARAL~~~p~ll 161 (254)
T COG1121 82 QKSSVDRSFPITVKDVVLLGRYGKKGWFRRLNKKDKEKVDEALERVGMEDLRDRQIGELSGGQKQRVLLARALAQNPDLL 161 (254)
T ss_pred cccccCCCCCcCHHHHHHccCcccccccccccHHHHHHHHHHHHHcCchhhhCCcccccCcHHHHHHHHHHHhccCCCEE
Confidence 965 22234578887765321110 111 1234445667888999999999999999999
Q ss_pred ecccccCCCCEEEEEEcChhHHHHHHHHHHHHHhCCCHHHHHH
Q 006117 170 LSEKLRPLIDLRVSVTGGVHFDLVKRVFRDIQRVGQEPEEIIH 212 (660)
Q Consensus 170 L~deLr~llDlkIfVdad~dirLiRRI~RDv~eRGrs~E~Vl~ 212 (660)
+.||+...+|.+ ....+-++....+..|.++-.|.|
T Consensus 162 lLDEP~~gvD~~-------~~~~i~~lL~~l~~eg~tIl~vtH 197 (254)
T COG1121 162 LLDEPFTGVDVA-------GQKEIYDLLKELRQEGKTVLMVTH 197 (254)
T ss_pred EecCCcccCCHH-------HHHHHHHHHHHHHHCCCEEEEEeC
Confidence 999999999973 223334444444444766544333
No 41
>TIGR03265 PhnT2 putative 2-aminoethylphosphonate ABC transporter, ATP-binding protein. This ABC transporter ATP-binding protein is found in a number of genomes in operon-like contexts strongly suggesting a substrate specificity for 2-aminoethylphosphonate (2-AEP). The characterized PhnSTUV system is absent in the genomes in which this system is found. These genomes encode systems for the catabolism of 2-AEP, making the need for a 2-AEP-specific transporter likely.
Probab=99.54 E-value=7.4e-15 Score=158.72 Aligned_cols=138 Identities=19% Similarity=0.141 Sum_probs=112.4
Q ss_pred cceeeeecCceEEEEecceeeccCCcceEEEEECCCCCcHHHHHHHHHHhC-CCceEEEecCcccc-----cccccccCC
Q 006117 40 EDTLSFEKGFFIVIRACQLLAQKNHGIILVGVAGPSGAGKTVFTEKVLNFM-PSIAVITMDNYNDS-----SRIIDGNFD 113 (660)
Q Consensus 40 ~~~ls~~~g~~~vL~~Isl~i~~ge~~~IIGI~GpSGSGKSTLak~L~~lL-p~~g~I~lDg~~~~-----~~~i~~vfq 113 (660)
.+++++.++.+.++++++|.+++|+ +++|+||||||||||+++|+++. |+.|.|.+||.... .+.++++||
T Consensus 7 ~~~l~~~~~~~~~l~~vs~~i~~Ge---~~~l~GpsGsGKSTLLr~iaGl~~p~~G~I~i~g~~~~~~~~~~r~ig~v~Q 83 (353)
T TIGR03265 7 IDNIRKRFGAFTALKDISLSVKKGE---FVCLLGPSGCGKTTLLRIIAGLERQTAGTIYQGGRDITRLPPQKRDYGIVFQ 83 (353)
T ss_pred EEEEEEEeCCeEEEEeeEEEEcCCC---EEEEECCCCCCHHHHHHHHHCCCCCCceEEEECCEECCCCCHHHCCEEEEeC
Confidence 3555666677789999999999999 99999999999999999999998 89999999997542 256899999
Q ss_pred CCCCCchhhHHHHHHhhhc-Cc--------c-------ccc-ccccccccccccceeeecCCccEEEEecceeecccccC
Q 006117 114 DPRLTDYDTLLENIRGLKE-GK--------A-------VQV-PIYDFKSSSRIGYRTLEVPSSRIVIIEGIYALSEKLRP 176 (660)
Q Consensus 114 ~p~l~d~~tl~e~L~~L~~-Gk--------~-------I~~-PiyD~s~~~rs~~~~~~v~~a~VVIVEGilaL~deLr~ 176 (660)
++.+|+..++.+|+..-.. .+ . +.. +..+...+..++++.+++..++.++.++.+++.||+..
T Consensus 84 ~~~lfp~~tv~eNi~~~~~~~~~~~~~~~~~~~~~l~~l~L~~~~~~~~~~LSgGq~QRvaLARaL~~~P~llLLDEP~s 163 (353)
T TIGR03265 84 SYALFPNLTVADNIAYGLKNRGMGRAEVAERVAELLDLVGLPGSERKYPGQLSGGQQQRVALARALATSPGLLLLDEPLS 163 (353)
T ss_pred CcccCCCCcHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCCchhhCChhhCCHHHHHHHHHHHHHhcCCCEEEEcCCcc
Confidence 9999999999999974321 10 0 111 22344555677788889999999999999999999999
Q ss_pred CCCE
Q 006117 177 LIDL 180 (660)
Q Consensus 177 llDl 180 (660)
.+|.
T Consensus 164 ~LD~ 167 (353)
T TIGR03265 164 ALDA 167 (353)
T ss_pred cCCH
Confidence 9997
No 42
>PRK13537 nodulation ABC transporter NodI; Provisional
Probab=99.54 E-value=1e-14 Score=154.51 Aligned_cols=160 Identities=18% Similarity=0.131 Sum_probs=121.3
Q ss_pred eccceeeeecCceEEEEecceeeccCCcceEEEEECCCCCcHHHHHHHHHHhC-CCceEEEecCccccc------ccccc
Q 006117 38 PIEDTLSFEKGFFIVIRACQLLAQKNHGIILVGVAGPSGAGKTVFTEKVLNFM-PSIAVITMDNYNDSS------RIIDG 110 (660)
Q Consensus 38 ~~~~~ls~~~g~~~vL~~Isl~i~~ge~~~IIGI~GpSGSGKSTLak~L~~lL-p~~g~I~lDg~~~~~------~~i~~ 110 (660)
...+++++.++...+|++|||.+++|+ ++||+||||||||||+++|++++ |+.|.|.++|..... +.+++
T Consensus 8 i~i~~l~k~~~~~~~l~~vsl~i~~Ge---i~gllGpNGaGKSTLl~~l~Gl~~p~~G~v~i~G~~~~~~~~~~~~~ig~ 84 (306)
T PRK13537 8 IDFRNVEKRYGDKLVVDGLSFHVQRGE---CFGLLGPNGAGKTTTLRMLLGLTHPDAGSISLCGEPVPSRARHARQRVGV 84 (306)
T ss_pred EEEEeEEEEECCeEEEecceEEEeCCc---EEEEECCCCCCHHHHHHHHhcCCCCCceEEEECCEecccchHHHHhcEEE
Confidence 344566666677889999999999999 99999999999999999999998 899999999975432 45899
Q ss_pred cCCCCCCCchhhHHHHHHhhhc--Ccc--------------ccc-ccccccccccccceeeecCCccEEEEecceeeccc
Q 006117 111 NFDDPRLTDYDTLLENIRGLKE--GKA--------------VQV-PIYDFKSSSRIGYRTLEVPSSRIVIIEGIYALSEK 173 (660)
Q Consensus 111 vfq~p~l~d~~tl~e~L~~L~~--Gk~--------------I~~-PiyD~s~~~rs~~~~~~v~~a~VVIVEGilaL~de 173 (660)
++|++.+++..++.+++..... +.. +.. +..+...+..++++.+++..+..++-++.+++.||
T Consensus 85 v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrl~la~aL~~~P~lllLDE 164 (306)
T PRK13537 85 VPQFDNLDPDFTVRENLLVFGRYFGLSAAAARALVPPLLEFAKLENKADAKVGELSGGMKRRLTLARALVNDPDVLVLDE 164 (306)
T ss_pred EeccCcCCCCCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCchHhcCchhhCCHHHHHHHHHHHHHhCCCCEEEEeC
Confidence 9999999998999999864321 100 001 11233334556677778888899999999999999
Q ss_pred ccCCCCEEEEEEcChhHHHHHHHHHHHHHhCCCH
Q 006117 174 LRPLIDLRVSVTGGVHFDLVKRVFRDIQRVGQEP 207 (660)
Q Consensus 174 Lr~llDlkIfVdad~dirLiRRI~RDv~eRGrs~ 207 (660)
+...+|. ...+.++.+.+++.+.|.+.
T Consensus 165 Pt~gLD~-------~~~~~l~~~l~~l~~~g~ti 191 (306)
T PRK13537 165 PTTGLDP-------QARHLMWERLRSLLARGKTI 191 (306)
T ss_pred CCcCCCH-------HHHHHHHHHHHHHHhCCCEE
Confidence 9999997 34455555666655445443
No 43
>PRK11153 metN DL-methionine transporter ATP-binding subunit; Provisional
Probab=99.54 E-value=3.7e-15 Score=160.29 Aligned_cols=148 Identities=20% Similarity=0.248 Sum_probs=111.1
Q ss_pred ceEEEEecceeeccCCcceEEEEECCCCCcHHHHHHHHHHhC-CCceEEEecCcccc----------cccccccCCCCCC
Q 006117 49 FFIVIRACQLLAQKNHGIILVGVAGPSGAGKTVFTEKVLNFM-PSIAVITMDNYNDS----------SRIIDGNFDDPRL 117 (660)
Q Consensus 49 ~~~vL~~Isl~i~~ge~~~IIGI~GpSGSGKSTLak~L~~lL-p~~g~I~lDg~~~~----------~~~i~~vfq~p~l 117 (660)
...+++++||.+++|+ ++||+|+||||||||+++|++++ |..|.|.++|.... .+.++++||++.+
T Consensus 17 ~~~il~~vsl~i~~Ge---i~~iiG~nGsGKSTLlk~L~Gl~~p~~G~I~~~g~~i~~~~~~~~~~~~~~ig~v~q~~~l 93 (343)
T PRK11153 17 TIHALNNVSLHIPAGE---IFGVIGASGAGKSTLIRCINLLERPTSGRVLVDGQDLTALSEKELRKARRQIGMIFQHFNL 93 (343)
T ss_pred ceEEEEeeEEEEcCCC---EEEEECCCCCcHHHHHHHHhCCCCCCceEEEECCEECCcCCHHHHHHHhcCEEEEeCCCcc
Confidence 4679999999999999 99999999999999999999998 79999999987532 1357899999999
Q ss_pred CchhhHHHHHHhhhc--Cc--------------ccccc-cccccccccccceeeecCCccEEEEecceeecccccCCCCE
Q 006117 118 TDYDTLLENIRGLKE--GK--------------AVQVP-IYDFKSSSRIGYRTLEVPSSRIVIIEGIYALSEKLRPLIDL 180 (660)
Q Consensus 118 ~d~~tl~e~L~~L~~--Gk--------------~I~~P-iyD~s~~~rs~~~~~~v~~a~VVIVEGilaL~deLr~llDl 180 (660)
++..++.+++..... +. .+..+ ..+......++++.+++..++.++.++.+++.||+...+|.
T Consensus 94 ~~~~tv~eni~~~~~~~~~~~~~~~~~~~~~l~~~gL~~~~~~~~~~LSgGq~qRv~lAraL~~~p~iLlLDEPts~LD~ 173 (343)
T PRK11153 94 LSSRTVFDNVALPLELAGTPKAEIKARVTELLELVGLSDKADRYPAQLSGGQKQRVAIARALASNPKVLLCDEATSALDP 173 (343)
T ss_pred CCCCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCchhhhCChhhCCHHHHHHHHHHHHHHcCCCEEEEeCCcccCCH
Confidence 988899999864321 10 01111 12333345667788888889999999999999999999997
Q ss_pred EEEEEcChhHHHHHHHHHHHHH-hCCC
Q 006117 181 RVSVTGGVHFDLVKRVFRDIQR-VGQE 206 (660)
Q Consensus 181 kIfVdad~dirLiRRI~RDv~e-RGrs 206 (660)
.....+..+.+++.. .|.+
T Consensus 174 -------~~~~~l~~~L~~l~~~~g~t 193 (343)
T PRK11153 174 -------ATTRSILELLKDINRELGLT 193 (343)
T ss_pred -------HHHHHHHHHHHHHHHhcCCE
Confidence 333444455554433 3544
No 44
>PRK11650 ugpC glycerol-3-phosphate transporter ATP-binding subunit; Provisional
Probab=99.53 E-value=1e-14 Score=157.78 Aligned_cols=138 Identities=20% Similarity=0.178 Sum_probs=111.5
Q ss_pred cceeeeec-CceEEEEecceeeccCCcceEEEEECCCCCcHHHHHHHHHHhC-CCceEEEecCcccc-----cccccccC
Q 006117 40 EDTLSFEK-GFFIVIRACQLLAQKNHGIILVGVAGPSGAGKTVFTEKVLNFM-PSIAVITMDNYNDS-----SRIIDGNF 112 (660)
Q Consensus 40 ~~~ls~~~-g~~~vL~~Isl~i~~ge~~~IIGI~GpSGSGKSTLak~L~~lL-p~~g~I~lDg~~~~-----~~~i~~vf 112 (660)
.+++++.+ +...+|++++|.+++|+ +++|+||||||||||+++|+++. |+.|.|.++|.... .+.++++|
T Consensus 6 i~~l~~~~~~~~~~l~~vsl~i~~Ge---~~~llG~sGsGKSTLLr~iaGl~~p~~G~I~~~g~~i~~~~~~~r~ig~v~ 82 (356)
T PRK11650 6 LQAVRKSYDGKTQVIKGIDLDVADGE---FIVLVGPSGCGKSTLLRMVAGLERITSGEIWIGGRVVNELEPADRDIAMVF 82 (356)
T ss_pred EEeEEEEeCCCCEEEeeeeEEEcCCC---EEEEECCCCCcHHHHHHHHHCCCCCCceEEEECCEECCCCCHHHCCEEEEe
Confidence 34555565 56789999999999999 99999999999999999999998 89999999997542 25689999
Q ss_pred CCCCCCchhhHHHHHHhhhc-Cc----c-----------ccc-ccccccccccccceeeecCCccEEEEecceeeccccc
Q 006117 113 DDPRLTDYDTLLENIRGLKE-GK----A-----------VQV-PIYDFKSSSRIGYRTLEVPSSRIVIIEGIYALSEKLR 175 (660)
Q Consensus 113 q~p~l~d~~tl~e~L~~L~~-Gk----~-----------I~~-PiyD~s~~~rs~~~~~~v~~a~VVIVEGilaL~deLr 175 (660)
|++.+|+.+++.+|+..... .+ . +.+ ...+...++.++++.+++..++.++.++.+++.||+.
T Consensus 83 Q~~~lfp~~tv~eNi~~~~~~~~~~~~~~~~~~~~~l~~~gL~~~~~~~~~~LSgGq~QRvalARAL~~~P~llLLDEP~ 162 (356)
T PRK11650 83 QNYALYPHMSVRENMAYGLKIRGMPKAEIEERVAEAARILELEPLLDRKPRELSGGQRQRVAMGRAIVREPAVFLFDEPL 162 (356)
T ss_pred CCccccCCCCHHHHHHhHHhhcCCCHHHHHHHHHHHHHHcCChhHhhCChhhCCHHHHHHHHHHHHHhcCCCEEEEeCCc
Confidence 99999999999999974321 10 0 011 1234445567778888999999999999999999999
Q ss_pred CCCCE
Q 006117 176 PLIDL 180 (660)
Q Consensus 176 ~llDl 180 (660)
..+|.
T Consensus 163 s~LD~ 167 (356)
T PRK11650 163 SNLDA 167 (356)
T ss_pred ccCCH
Confidence 99997
No 45
>PRK11432 fbpC ferric transporter ATP-binding subunit; Provisional
Probab=99.52 E-value=1.2e-14 Score=156.93 Aligned_cols=138 Identities=24% Similarity=0.205 Sum_probs=112.1
Q ss_pred cceeeeecCceEEEEecceeeccCCcceEEEEECCCCCcHHHHHHHHHHhC-CCceEEEecCcccc-----cccccccCC
Q 006117 40 EDTLSFEKGFFIVIRACQLLAQKNHGIILVGVAGPSGAGKTVFTEKVLNFM-PSIAVITMDNYNDS-----SRIIDGNFD 113 (660)
Q Consensus 40 ~~~ls~~~g~~~vL~~Isl~i~~ge~~~IIGI~GpSGSGKSTLak~L~~lL-p~~g~I~lDg~~~~-----~~~i~~vfq 113 (660)
.+++++.++...++++++|.+++|+ +++|+||||||||||+++|+++. |+.|.|.+||.... .+.++++||
T Consensus 9 ~~~l~~~~~~~~~l~~isl~i~~Ge---~~~llGpsGsGKSTLLr~IaGl~~p~~G~I~~~g~~i~~~~~~~r~ig~vfQ 85 (351)
T PRK11432 9 LKNITKRFGSNTVIDNLNLTIKQGT---MVTLLGPSGCGKTTVLRLVAGLEKPTEGQIFIDGEDVTHRSIQQRDICMVFQ 85 (351)
T ss_pred EEeEEEEECCeEEEeeeEEEEcCCC---EEEEECCCCCcHHHHHHHHHCCCCCCceEEEECCEECCCCCHHHCCEEEEeC
Confidence 3555666677789999999999999 99999999999999999999998 89999999997532 256899999
Q ss_pred CCCCCchhhHHHHHHhhhc--C--c-----c-------ccc-ccccccccccccceeeecCCccEEEEecceeecccccC
Q 006117 114 DPRLTDYDTLLENIRGLKE--G--K-----A-------VQV-PIYDFKSSSRIGYRTLEVPSSRIVIIEGIYALSEKLRP 176 (660)
Q Consensus 114 ~p~l~d~~tl~e~L~~L~~--G--k-----~-------I~~-PiyD~s~~~rs~~~~~~v~~a~VVIVEGilaL~deLr~ 176 (660)
++.+|+.+++.+|+..-.. + + . +.. ...+...+..++++.+++..++.++.++.+++.||+..
T Consensus 86 ~~~lfp~~tv~eNi~~~l~~~~~~~~~~~~~v~~~l~~~gl~~~~~r~~~~LSgGq~QRVaLARaL~~~P~lLLLDEP~s 165 (351)
T PRK11432 86 SYALFPHMSLGENVGYGLKMLGVPKEERKQRVKEALELVDLAGFEDRYVDQISGGQQQRVALARALILKPKVLLFDEPLS 165 (351)
T ss_pred CcccCCCCCHHHHHHHHHhHcCCCHHHHHHHHHHHHHHcCCchhhcCChhhCCHHHHHHHHHHHHHHcCCCEEEEcCCcc
Confidence 9999999999999974211 1 0 0 111 12344455667788889999999999999999999999
Q ss_pred CCCE
Q 006117 177 LIDL 180 (660)
Q Consensus 177 llDl 180 (660)
.+|.
T Consensus 166 ~LD~ 169 (351)
T PRK11432 166 NLDA 169 (351)
T ss_pred cCCH
Confidence 9997
No 46
>PLN02796 D-glycerate 3-kinase
Probab=99.52 E-value=5.7e-14 Score=150.58 Aligned_cols=175 Identities=18% Similarity=0.260 Sum_probs=125.9
Q ss_pred EEEecceee---ccC--CcceEEEEECCCCCcHHHHHHHHHHhCC----CceEEEecCccccccc-ccccCCC-------
Q 006117 52 VIRACQLLA---QKN--HGIILVGVAGPSGAGKTVFTEKVLNFMP----SIAVITMDNYNDSSRI-IDGNFDD------- 114 (660)
Q Consensus 52 vL~~Isl~i---~~g--e~~~IIGI~GpSGSGKSTLak~L~~lLp----~~g~I~lDg~~~~~~~-i~~vfq~------- 114 (660)
+++.+++.+ ++| .+|++|||+|++|||||||++.|.+.+. ..|.|++|+++..... .....++
T Consensus 81 il~~l~~~~~~~~~G~~~~pliIGI~G~sGSGKSTLa~~L~~lL~~~g~~~g~IsiDdfYLt~~e~~~L~~q~P~n~Ll~ 160 (347)
T PLN02796 81 CEDQLEAHRSKFKDGDEIPPLVIGISAPQGCGKTTLVFALVYLFNATGRRAASLSIDDFYLTAADQAKLAEANPGNALLE 160 (347)
T ss_pred HHHHHHHHHhhhccCCCCCCEEEEEECCCCCcHHHHHHHHHHHhcccCCceeEEEECCcccchhhHHHHHhhCcchhhhh
Confidence 566777665 233 3589999999999999999999999983 3789999999764311 1122232
Q ss_pred ----CCCCchhhHHHHHHhhh----cCcccccccccccccc----cccc--eeeecCCccEEEEecceeeccc-------
Q 006117 115 ----PRLTDYDTLLENIRGLK----EGKAVQVPIYDFKSSS----RIGY--RTLEVPSSRIVIIEGIYALSEK------- 173 (660)
Q Consensus 115 ----p~l~d~~tl~e~L~~L~----~Gk~I~~PiyD~s~~~----rs~~--~~~~v~~a~VVIVEGilaL~de------- 173 (660)
|..+|...+.+++..++ .|+.+.+|.||++.+. |... ......+.+|||+||+++....
T Consensus 161 ~RG~PgThDl~Ll~e~L~~L~~~~~~g~~v~iP~yDks~~~g~gDR~~~~~w~~v~~p~dVII~EGw~vG~~p~~~~~l~ 240 (347)
T PLN02796 161 LRGNAGSHDLALGVETLEALRKLNKEGSKMKVPRYDKSAYGGRGDRADPSTWPEVEGPLDVVLFEGWMLGFKPLGPDAVK 240 (347)
T ss_pred cCCCCchhHHHHHHHHHHHHHhhhcCCCceecCCCCccccCCCCCCcCcccceEecCCCCEEEEcCcccCCCCCChHHhh
Confidence 45678888899998887 5789999999999975 4321 1233478899999999987621
Q ss_pred -------------------ccCCCCEEEEEEcC-hhHHHHHHHHHHHHH-----hCCCHHHHHHHHHhccccchhhccc
Q 006117 174 -------------------LRPLIDLRVSVTGG-VHFDLVKRVFRDIQR-----VGQEPEEIIHQISETVYPMYKAFIE 227 (660)
Q Consensus 174 -------------------Lr~llDlkIfVdad-~dirLiRRI~RDv~e-----RGrs~E~Vl~qy~~~v~P~~~~fIe 227 (660)
+...+|..|.+.++ .+.-..||.+...+- .|++.++| .+|.++.+|+|+.|..
T Consensus 241 ~~~~~l~~vN~~L~~y~~~w~~~~d~~i~L~a~~~~~v~~WR~qQE~~l~~~~~~gMsde~v-~~FV~~~mP~y~~y~~ 318 (347)
T PLN02796 241 AVDPQLEVVNKNLEAYYDAWDKLVDSWIVIKVDDPSWVYEWRLQAEIAMRAKGKPGMSDEEV-ADFVSRYMPAYKAYLP 318 (347)
T ss_pred ccChhHHHHHHHHHHHHHHHHHhhceEEEEeCCCchHHHHHHHHHHHHHHHhCCCCCCHHHH-HHHHHHHHHHHHHHHH
Confidence 22357888888876 355566777666432 36788886 4566888999998754
No 47
>PRK13536 nodulation factor exporter subunit NodI; Provisional
Probab=99.52 E-value=1.6e-14 Score=155.31 Aligned_cols=160 Identities=18% Similarity=0.137 Sum_probs=120.9
Q ss_pred eeccceeeeecCceEEEEecceeeccCCcceEEEEECCCCCcHHHHHHHHHHhC-CCceEEEecCcccc------ccccc
Q 006117 37 VPIEDTLSFEKGFFIVIRACQLLAQKNHGIILVGVAGPSGAGKTVFTEKVLNFM-PSIAVITMDNYNDS------SRIID 109 (660)
Q Consensus 37 ~~~~~~ls~~~g~~~vL~~Isl~i~~ge~~~IIGI~GpSGSGKSTLak~L~~lL-p~~g~I~lDg~~~~------~~~i~ 109 (660)
+...+++++.++...+|+++||.+++|+ ++||+||||||||||+++|++++ |+.|.|.++|.... .+.++
T Consensus 41 ~i~i~nl~k~y~~~~~l~~is~~i~~Ge---i~gLlGpNGaGKSTLl~~L~Gl~~p~~G~i~i~G~~~~~~~~~~~~~ig 117 (340)
T PRK13536 41 AIDLAGVSKSYGDKAVVNGLSFTVASGE---CFGLLGPNGAGKSTIARMILGMTSPDAGKITVLGVPVPARARLARARIG 117 (340)
T ss_pred eEEEEEEEEEECCEEEEeeeEEEEcCCC---EEEEECCCCCCHHHHHHHHHcCCCCCceEEEECCEECCcchHHHhccEE
Confidence 3445677777788889999999999999 99999999999999999999998 89999999997532 24588
Q ss_pred ccCCCCCCCchhhHHHHHHhhhc--Ccc--------------cccc-cccccccccccceeeecCCccEEEEecceeecc
Q 006117 110 GNFDDPRLTDYDTLLENIRGLKE--GKA--------------VQVP-IYDFKSSSRIGYRTLEVPSSRIVIIEGIYALSE 172 (660)
Q Consensus 110 ~vfq~p~l~d~~tl~e~L~~L~~--Gk~--------------I~~P-iyD~s~~~rs~~~~~~v~~a~VVIVEGilaL~d 172 (660)
++||++.+++..++.+++..+.. +.. +..+ ..+...+..++++.+++..+..++.++.+++.|
T Consensus 118 ~v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~ll~~~~L~~~~~~~~~~LS~G~kqrv~lA~aL~~~P~lLiLD 197 (340)
T PRK13536 118 VVPQFDNLDLEFTVRENLLVFGRYFGMSTREIEAVIPSLLEFARLESKADARVSDLSGGMKRRLTLARALINDPQLLILD 197 (340)
T ss_pred EEeCCccCCCCCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCchhhCCChhhCCHHHHHHHHHHHHHhcCCCEEEEE
Confidence 99999999988999999864321 110 0111 123333445667777888888999999999999
Q ss_pred cccCCCCEEEEEEcChhHHHHHHHHHHHHHhCCC
Q 006117 173 KLRPLIDLRVSVTGGVHFDLVKRVFRDIQRVGQE 206 (660)
Q Consensus 173 eLr~llDlkIfVdad~dirLiRRI~RDv~eRGrs 206 (660)
|+...+|. ...+.++.+.+.....|.+
T Consensus 198 EPt~gLD~-------~~r~~l~~~l~~l~~~g~t 224 (340)
T PRK13536 198 EPTTGLDP-------HARHLIWERLRSLLARGKT 224 (340)
T ss_pred CCCCCCCH-------HHHHHHHHHHHHHHhCCCE
Confidence 99999997 3444555555555444544
No 48
>PRK08233 hypothetical protein; Provisional
Probab=99.52 E-value=9.8e-14 Score=133.84 Aligned_cols=151 Identities=19% Similarity=0.284 Sum_probs=104.3
Q ss_pred ceEEEEECCCCCcHHHHHHHHHHhCCCceEEEecCcccccc--cccccCCCC---CCCchhhHHHHHHhhhcCccccccc
Q 006117 66 IILVGVAGPSGAGKTVFTEKVLNFMPSIAVITMDNYNDSSR--IIDGNFDDP---RLTDYDTLLENIRGLKEGKAVQVPI 140 (660)
Q Consensus 66 ~~IIGI~GpSGSGKSTLak~L~~lLp~~g~I~lDg~~~~~~--~i~~vfq~p---~l~d~~tl~e~L~~L~~Gk~I~~Pi 140 (660)
+.+|+|.|++||||||+++.|++.++....+.+|+++.... ......... ..++...+.+.+..+..+
T Consensus 3 ~~iI~I~G~~GsGKtTla~~L~~~l~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~------- 75 (182)
T PRK08233 3 TKIITIAAVSGGGKTTLTERLTHKLKNSKALYFDRYDFDNCPEDICKWIDKGANYSEWVLTPLIKDIQELIAK------- 75 (182)
T ss_pred ceEEEEECCCCCCHHHHHHHHHhhCCCCceEEECCEEcccCchhhhhhhhccCChhhhhhHHHHHHHHHHHcC-------
Confidence 46999999999999999999999996667888888753211 000001111 112222333333332211
Q ss_pred ccccccccccceeeecCCccEEEEecceeec-ccccCCCCEEEEEEcChhHHHHHHHHHHHHHhC-CCHHHHHHHHHhcc
Q 006117 141 YDFKSSSRIGYRTLEVPSSRIVIIEGIYALS-EKLRPLIDLRVSVTGGVHFDLVKRVFRDIQRVG-QEPEEIIHQISETV 218 (660)
Q Consensus 141 yD~s~~~rs~~~~~~v~~a~VVIVEGilaL~-deLr~llDlkIfVdad~dirLiRRI~RDv~eRG-rs~E~Vl~qy~~~v 218 (660)
...++||+||++... +++...+|++||+++|.++++.|++.|+..... ......+..|...+
T Consensus 76 ----------------~~~~~vivd~~~~~~~~~~~~~~d~~i~l~~~~~~~~~R~~~R~~~~~~~~~~~~~~~~~~~~~ 139 (182)
T PRK08233 76 ----------------SNVDYIIVDYPFAYLNSEMRQFIDVTIFIDTPLDIAMARRILRDFKEDTGNEIHNDLKHYLNYA 139 (182)
T ss_pred ----------------CCceEEEEeeehhhccHHHHHHcCEEEEEcCCHHHHHHHHHHHHhhhccccchhhHHHHHHHHH
Confidence 112578899987755 678889999999999999999999988864321 23444567777889
Q ss_pred ccchhhcccCCcCcCcEEEeC
Q 006117 219 YPMYKAFIEPDLQTAHIKIIN 239 (660)
Q Consensus 219 ~P~~~~fIeP~k~~ADiII~N 239 (660)
+|.|.+++++.+..|+++|.+
T Consensus 140 ~~~y~~~~~~~~~~~~~vId~ 160 (182)
T PRK08233 140 RPLYLEALHTVKPNADIVLDG 160 (182)
T ss_pred HHHHHHHhhcCccCCeEEEcC
Confidence 999999999888889999853
No 49
>PRK09452 potA putrescine/spermidine ABC transporter ATPase protein; Reviewed
Probab=99.51 E-value=1.8e-14 Score=157.01 Aligned_cols=138 Identities=22% Similarity=0.198 Sum_probs=111.9
Q ss_pred cceeeeecCceEEEEecceeeccCCcceEEEEECCCCCcHHHHHHHHHHhC-CCceEEEecCcccc-----cccccccCC
Q 006117 40 EDTLSFEKGFFIVIRACQLLAQKNHGIILVGVAGPSGAGKTVFTEKVLNFM-PSIAVITMDNYNDS-----SRIIDGNFD 113 (660)
Q Consensus 40 ~~~ls~~~g~~~vL~~Isl~i~~ge~~~IIGI~GpSGSGKSTLak~L~~lL-p~~g~I~lDg~~~~-----~~~i~~vfq 113 (660)
.+++++.++.+.++++++|.+++|+ +++|+||||||||||+++|++++ |+.|.|.++|.... .+.++++||
T Consensus 17 l~~l~~~~~~~~~l~~vsl~i~~Ge---~~~LlGpsGsGKSTLLr~IaGl~~p~~G~I~~~g~~i~~~~~~~r~ig~vfQ 93 (375)
T PRK09452 17 LRGISKSFDGKEVISNLDLTINNGE---FLTLLGPSGCGKTTVLRLIAGFETPDSGRIMLDGQDITHVPAENRHVNTVFQ 93 (375)
T ss_pred EEEEEEEECCeEEEeeeEEEEeCCC---EEEEECCCCCcHHHHHHHHhCCCCCCceEEEECCEECCCCCHHHCCEEEEec
Confidence 3556666677789999999999999 99999999999999999999998 78999999997542 256899999
Q ss_pred CCCCCchhhHHHHHHhhhc--Cc-------c-------ccc-ccccccccccccceeeecCCccEEEEecceeecccccC
Q 006117 114 DPRLTDYDTLLENIRGLKE--GK-------A-------VQV-PIYDFKSSSRIGYRTLEVPSSRIVIIEGIYALSEKLRP 176 (660)
Q Consensus 114 ~p~l~d~~tl~e~L~~L~~--Gk-------~-------I~~-PiyD~s~~~rs~~~~~~v~~a~VVIVEGilaL~deLr~ 176 (660)
++.+|+.+++.+|+..... +. . +.+ +..+...+..++++.+++..++.++.++.+++.||+..
T Consensus 94 ~~~lfp~ltv~eNi~~~l~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~p~~LSgGq~QRVaLARaL~~~P~llLLDEP~s 173 (375)
T PRK09452 94 SYALFPHMTVFENVAFGLRMQKTPAAEITPRVMEALRMVQLEEFAQRKPHQLSGGQQQRVAIARAVVNKPKVLLLDESLS 173 (375)
T ss_pred CcccCCCCCHHHHHHHHHhhcCCCHHHHHHHHHHHHHHcCCchhhhCChhhCCHHHHHHHHHHHHHhcCCCEEEEeCCCC
Confidence 9999999999999974221 10 0 011 12344455667788889999999999999999999999
Q ss_pred CCCE
Q 006117 177 LIDL 180 (660)
Q Consensus 177 llDl 180 (660)
.+|.
T Consensus 174 ~LD~ 177 (375)
T PRK09452 174 ALDY 177 (375)
T ss_pred cCCH
Confidence 9997
No 50
>COG1131 CcmA ABC-type multidrug transport system, ATPase component [Defense mechanisms]
Probab=99.51 E-value=2e-14 Score=151.65 Aligned_cols=158 Identities=16% Similarity=0.161 Sum_probs=123.9
Q ss_pred cceeeeecC-ceEEEEecceeeccCCcceEEEEECCCCCcHHHHHHHHHHhC-CCceEEEecCccccc------cccccc
Q 006117 40 EDTLSFEKG-FFIVIRACQLLAQKNHGIILVGVAGPSGAGKTVFTEKVLNFM-PSIAVITMDNYNDSS------RIIDGN 111 (660)
Q Consensus 40 ~~~ls~~~g-~~~vL~~Isl~i~~ge~~~IIGI~GpSGSGKSTLak~L~~lL-p~~g~I~lDg~~~~~------~~i~~v 111 (660)
..+++..++ ...+|++|||.+++|+ ++|++||||||||||+++|++++ |+.|.|.++|..... +.++|+
T Consensus 7 ~~~l~k~~~~~~~~l~~vs~~i~~Ge---i~gllG~NGAGKTTllk~l~gl~~p~~G~i~i~G~~~~~~~~~~~~~igy~ 83 (293)
T COG1131 7 VRNLTKKYGGDKTALDGVSFEVEPGE---IFGLLGPNGAGKTTLLKILAGLLKPTSGEILVLGYDVVKEPAKVRRRIGYV 83 (293)
T ss_pred ecceEEEeCCCCEEEeceeEEEcCCe---EEEEECCCCCCHHHHHHHHhCCcCCCceEEEEcCEeCccCHHHHHhheEEE
Confidence 356667778 6899999999999999 99999999999999999999999 899999999975432 458999
Q ss_pred CCCCCCCchhhHHHHHHhhhcCcc----------------cccccc-cccccccccceeeecCCccEEEEecceeecccc
Q 006117 112 FDDPRLTDYDTLLENIRGLKEGKA----------------VQVPIY-DFKSSSRIGYRTLEVPSSRIVIIEGIYALSEKL 174 (660)
Q Consensus 112 fq~p~l~d~~tl~e~L~~L~~Gk~----------------I~~Piy-D~s~~~rs~~~~~~v~~a~VVIVEGilaL~deL 174 (660)
+|+|.+++.+++.|+|..+..-.. +..+.+ +......+.++.+++..+..++-++.+++.||+
T Consensus 84 ~~~~~~~~~lT~~e~l~~~~~l~~~~~~~~~~~~~~~l~~~~L~~~~~~~~~~lS~G~kqrl~ia~aL~~~P~lliLDEP 163 (293)
T COG1131 84 PQEPSLYPELTVRENLEFFARLYGLSKEEAEERIEELLELFGLEDKANKKVRTLSGGMKQRLSIALALLHDPELLILDEP 163 (293)
T ss_pred ccCCCCCccccHHHHHHHHHHHhCCChhHHHHHHHHHHHHcCCchhhCcchhhcCHHHHHHHHHHHHHhcCCCEEEECCC
Confidence 999999999999999976443111 111111 111233455667777888889999999999999
Q ss_pred cCCCCEEEEEEcChhHHHHHHHHHHHHHhC-CCH
Q 006117 175 RPLIDLRVSVTGGVHFDLVKRVFRDIQRVG-QEP 207 (660)
Q Consensus 175 r~llDlkIfVdad~dirLiRRI~RDv~eRG-rs~ 207 (660)
...+|. ......+.+.|+....| .++
T Consensus 164 t~GLDp-------~~~~~~~~~l~~l~~~g~~tv 190 (293)
T COG1131 164 TSGLDP-------ESRREIWELLRELAKEGGVTI 190 (293)
T ss_pred CcCCCH-------HHHHHHHHHHHHHHhCCCcEE
Confidence 999997 55667778888888776 444
No 51
>COG0411 LivG ABC-type branched-chain amino acid transport systems, ATPase component [Amino acid transport and metabolism]
Probab=99.50 E-value=1.7e-14 Score=147.01 Aligned_cols=189 Identities=17% Similarity=0.177 Sum_probs=134.0
Q ss_pred eccceeeeecCceEEEEecceeeccCCcceEEEEECCCCCcHHHHHHHHHHhC-CCceEEEecCccccc--------ccc
Q 006117 38 PIEDTLSFEKGFFIVIRACQLLAQKNHGIILVGVAGPSGAGKTVFTEKVLNFM-PSIAVITMDNYNDSS--------RII 108 (660)
Q Consensus 38 ~~~~~ls~~~g~~~vL~~Isl~i~~ge~~~IIGI~GpSGSGKSTLak~L~~lL-p~~g~I~lDg~~~~~--------~~i 108 (660)
...++++..+|...++++|||.+++|+ ++||+|||||||||+.++|.+.+ |+.|.|.++|.+... ..+
T Consensus 5 L~v~~l~k~FGGl~Al~~Vsl~v~~Ge---i~~LIGPNGAGKTTlfNlitG~~~P~~G~v~~~G~~it~l~p~~iar~Gi 81 (250)
T COG0411 5 LEVRGLSKRFGGLTAVNDVSLEVRPGE---IVGLIGPNGAGKTTLFNLITGFYKPSSGTVIFRGRDITGLPPHRIARLGI 81 (250)
T ss_pred eeeccceeecCCEEEEeceeEEEcCCe---EEEEECCCCCCceeeeeeecccccCCCceEEECCcccCCCCHHHHHhccc
Confidence 445677777899999999999999999 99999999999999999999999 899999999985432 335
Q ss_pred cccCCCCCCCchhhHHHHHHhhhc--C---ccccccc------------------------ccccccccccceeeecCCc
Q 006117 109 DGNFDDPRLTDYDTLLENIRGLKE--G---KAVQVPI------------------------YDFKSSSRIGYRTLEVPSS 159 (660)
Q Consensus 109 ~~vfq~p~l~d~~tl~e~L~~L~~--G---k~I~~Pi------------------------yD~s~~~rs~~~~~~v~~a 159 (660)
.-.||.+.+|+.+++.||+.--.. . .....|. .+...+..+.++...++.+
T Consensus 82 ~RTFQ~~rlF~~lTVlENv~va~~~~~~~~~~l~~~~~~~~e~~~~e~A~~~Le~vgL~~~a~~~A~~LsyG~qR~LEIA 161 (250)
T COG0411 82 ARTFQITRLFPGLTVLENVAVGAHARLGLSGLLGRPRARKEEREARERARELLEFVGLGELADRPAGNLSYGQQRRLEIA 161 (250)
T ss_pred eeecccccccCCCcHHHHHHHHhhhhhhhhhhhccccchhhHHHHHHHHHHHHHHcCCchhhcchhhcCChhHhHHHHHH
Confidence 668999999999999999864211 0 0111111 1111222333455566777
Q ss_pred cEEEEecceeecccccCCCCEEEEEEcChhHHHHHHHHHHHHHhCCCHHHHHHHHHhccccchhhcccCCcCcCcEEEeC
Q 006117 160 RIVIIEGIYALSEKLRPLIDLRVSVTGGVHFDLVKRVFRDIQRVGQEPEEIIHQISETVYPMYKAFIEPDLQTAHIKIIN 239 (660)
Q Consensus 160 ~VVIVEGilaL~deLr~llDlkIfVdad~dirLiRRI~RDv~eRGrs~E~Vl~qy~~~v~P~~~~fIeP~k~~ADiII~N 239 (660)
+.+..++.+++.||+...+.. .+..-+..+.|++.+++ ..+=++|-+
T Consensus 162 rALa~~P~lLLLDEPaAGln~-------~e~~~l~~~i~~i~~~~--------------------------g~tillIEH 208 (250)
T COG0411 162 RALATQPKLLLLDEPAAGLNP-------EETEELAELIRELRDRG--------------------------GVTILLIEH 208 (250)
T ss_pred HHHhcCCCEEEecCccCCCCH-------HHHHHHHHHHHHHHhcC--------------------------CcEEEEEEe
Confidence 888899999999998888765 34433444444443311 123456666
Q ss_pred CCCCCCCCCCceEEeccCCCccH
Q 006117 240 KFNPFTGFQNPTYILKSTRPVTV 262 (660)
Q Consensus 240 ~~~p~~g~~n~v~iLKsa~~v~~ 262 (660)
+++..-+.++.++++..+..+..
T Consensus 209 dM~~Vm~l~dri~Vl~~G~~IAe 231 (250)
T COG0411 209 DMKLVMGLADRIVVLNYGEVIAE 231 (250)
T ss_pred ccHHHhhhccEEEeccCCcCccc
Confidence 77777778888888777765543
No 52
>COG3638 ABC-type phosphate/phosphonate transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=99.50 E-value=1.7e-14 Score=146.24 Aligned_cols=164 Identities=21% Similarity=0.264 Sum_probs=121.8
Q ss_pred ceeeeec-CceEEEEecceeeccCCcceEEEEECCCCCcHHHHHHHHHHhC-CCceEEEecCcccc----------cccc
Q 006117 41 DTLSFEK-GFFIVIRACQLLAQKNHGIILVGVAGPSGAGKTVFTEKVLNFM-PSIAVITMDNYNDS----------SRII 108 (660)
Q Consensus 41 ~~ls~~~-g~~~vL~~Isl~i~~ge~~~IIGI~GpSGSGKSTLak~L~~lL-p~~g~I~lDg~~~~----------~~~i 108 (660)
++++..+ +...+|++|+|.+++|+ +|+|+|+||||||||+++|.++. |+.|.|.++|.... .+.+
T Consensus 7 ~nl~k~yp~~~~aL~~Vnl~I~~GE---~VaiIG~SGaGKSTLLR~lngl~d~t~G~i~~~g~~i~~~~~k~lr~~r~~i 83 (258)
T COG3638 7 KNLSKTYPGGHQALKDVNLEINQGE---MVAIIGPSGAGKSTLLRSLNGLVDPTSGEILFNGVQITKLKGKELRKLRRDI 83 (258)
T ss_pred eeeeeecCCCceeeeeEeEEeCCCc---EEEEECCCCCcHHHHHHHHhcccCCCcceEEecccchhccchHHHHHHHHhc
Confidence 4444555 77889999999999999 99999999999999999999987 89999999996432 2468
Q ss_pred cccCCCCCCCchhhHHHHHHhhhcCcc------------------------cccccccc-cccccccceeeecCCccEEE
Q 006117 109 DGNFDDPRLTDYDTLLENIRGLKEGKA------------------------VQVPIYDF-KSSSRIGYRTLEVPSSRIVI 163 (660)
Q Consensus 109 ~~vfq~p~l~d~~tl~e~L~~L~~Gk~------------------------I~~PiyD~-s~~~rs~~~~~~v~~a~VVI 163 (660)
+++||++++.+..++.+|+..-+-+.. +.+-.+-+ ...+.++++.++++.+++++
T Consensus 84 GmIfQ~~nLv~r~sv~~NVl~grl~~~s~~~slfglfsk~dk~~Al~aLervgi~~~A~qra~~LSGGQQQRVaIARaL~ 163 (258)
T COG3638 84 GMIFQQFNLVPRLSVLENVLLGRLGYTSTWRSLFGLFSKEDKAQALDALERVGILDKAYQRASTLSGGQQQRVAIARALV 163 (258)
T ss_pred eeEeccCCcccccHHHHHHHhhhcccchHHHHHhCCCCHHHHHHHHHHHHHcCcHHHHHHHhccCCcchhHHHHHHHHHh
Confidence 999999999999999999865332211 11110111 12345778899999999999
Q ss_pred EecceeecccccCCCCEEEEEEcChhHHHHHHHHHHHH-HhCCCHHHHHHHH
Q 006117 164 IEGIYALSEKLRPLIDLRVSVTGGVHFDLVKRVFRDIQ-RVGQEPEEIIHQI 214 (660)
Q Consensus 164 VEGilaL~deLr~llDlkIfVdad~dirLiRRI~RDv~-eRGrs~E~Vl~qy 214 (660)
-++.+++-|||...+|.. ..+.+-.+.+++. +.|.|.--.+|+.
T Consensus 164 Q~pkiILADEPvasLDp~-------~a~~Vm~~l~~in~~~g~Tvi~nLH~v 208 (258)
T COG3638 164 QQPKIILADEPVASLDPE-------SAKKVMDILKDINQEDGITVIVNLHQV 208 (258)
T ss_pred cCCCEEecCCcccccChh-------hHHHHHHHHHHHHHHcCCEEEEEechH
Confidence 999999999999999972 2333344444443 4577764444443
No 53
>PRK10851 sulfate/thiosulfate transporter subunit; Provisional
Probab=99.50 E-value=2.4e-14 Score=154.80 Aligned_cols=138 Identities=20% Similarity=0.175 Sum_probs=110.8
Q ss_pred cceeeeecCceEEEEecceeeccCCcceEEEEECCCCCcHHHHHHHHHHhC-CCceEEEecCcccc-----cccccccCC
Q 006117 40 EDTLSFEKGFFIVIRACQLLAQKNHGIILVGVAGPSGAGKTVFTEKVLNFM-PSIAVITMDNYNDS-----SRIIDGNFD 113 (660)
Q Consensus 40 ~~~ls~~~g~~~vL~~Isl~i~~ge~~~IIGI~GpSGSGKSTLak~L~~lL-p~~g~I~lDg~~~~-----~~~i~~vfq 113 (660)
.+++++.++...++++++|.+++|+ +++|+||||||||||+++|++++ |+.|.|.+||.... .+.++++||
T Consensus 5 i~~l~~~~~~~~~l~~isl~i~~Ge---~~~llGpsGsGKSTLLr~IaGl~~p~~G~I~i~g~~i~~~~~~~r~i~~v~Q 81 (353)
T PRK10851 5 IANIKKSFGRTQVLNDISLDIPSGQ---MVALLGPSGSGKTTLLRIIAGLEHQTSGHIRFHGTDVSRLHARDRKVGFVFQ 81 (353)
T ss_pred EEEEEEEeCCeEEEEEeEEEEcCCC---EEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEECCCCCHHHCCEEEEec
Confidence 3555666667789999999999999 99999999999999999999998 79999999997542 246899999
Q ss_pred CCCCCchhhHHHHHHhhhc------Cc--------------ccccc-cccccccccccceeeecCCccEEEEecceeecc
Q 006117 114 DPRLTDYDTLLENIRGLKE------GK--------------AVQVP-IYDFKSSSRIGYRTLEVPSSRIVIIEGIYALSE 172 (660)
Q Consensus 114 ~p~l~d~~tl~e~L~~L~~------Gk--------------~I~~P-iyD~s~~~rs~~~~~~v~~a~VVIVEGilaL~d 172 (660)
++.+|+..++.+|+..... +. .+..+ ..+...+..++++.+++..++.++.++.+++.|
T Consensus 82 ~~~l~p~~tv~eni~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~L~~~~~~~~~~LSgGq~QRvalArAL~~~P~llLLD 161 (353)
T PRK10851 82 HYALFRHMTVFDNIAFGLTVLPRRERPNAAAIKAKVTQLLEMVQLAHLADRYPAQLSGGQKQRVALARALAVEPQILLLD 161 (353)
T ss_pred CcccCCCCcHHHHHHhhhhhcccccCCCHHHHHHHHHHHHHHcCCchhhhCChhhCCHHHHHHHHHHHHHhcCCCEEEEe
Confidence 9999999999999874211 10 01111 123344556677888899999999999999999
Q ss_pred cccCCCCE
Q 006117 173 KLRPLIDL 180 (660)
Q Consensus 173 eLr~llDl 180 (660)
|+...+|.
T Consensus 162 EP~s~LD~ 169 (353)
T PRK10851 162 EPFGALDA 169 (353)
T ss_pred CCCccCCH
Confidence 99999997
No 54
>TIGR03258 PhnT 2-aminoethylphosphonate ABC transport system, ATP-binding component PhnT. This ATP-binding component of an ABC transport system is found in Salmonella and Burkholderia lineages in the vicinity of enzymes for the breakdown of 2-aminoethylphosphonate.
Probab=99.50 E-value=2.4e-14 Score=155.27 Aligned_cols=137 Identities=19% Similarity=0.169 Sum_probs=110.4
Q ss_pred ceeeeecCceEEEEecceeeccCCcceEEEEECCCCCcHHHHHHHHHHhC-CCc--eEEEecCcccc-----cccccccC
Q 006117 41 DTLSFEKGFFIVIRACQLLAQKNHGIILVGVAGPSGAGKTVFTEKVLNFM-PSI--AVITMDNYNDS-----SRIIDGNF 112 (660)
Q Consensus 41 ~~ls~~~g~~~vL~~Isl~i~~ge~~~IIGI~GpSGSGKSTLak~L~~lL-p~~--g~I~lDg~~~~-----~~~i~~vf 112 (660)
+++++.++...++++++|.+++|+ +++|+||||||||||+++|+++. |+. |.|.++|.... .+.++++|
T Consensus 9 ~~l~~~~~~~~~l~~vsl~i~~Ge---~~~llGpsGsGKSTLLr~iaGl~~p~~~~G~i~~~g~~~~~~~~~~r~ig~vf 85 (362)
T TIGR03258 9 DHLRVAYGANTVLDDLSLEIEAGE---LLALIGKSGCGKTTLLRAIAGFVKAAGLTGRIAIADRDLTHAPPHKRGLALLF 85 (362)
T ss_pred EEEEEEECCeEEEeeeEEEECCCC---EEEEECCCCCCHHHHHHHHhCCCCCCCCCEEEEECCEECCCCCHHHCCEEEEE
Confidence 344555566789999999999999 99999999999999999999998 788 99999997532 25689999
Q ss_pred CCCCCCchhhHHHHHHhhhc-Cc--------c-------ccc-ccccccccccccceeeecCCccEEEEecceeeccccc
Q 006117 113 DDPRLTDYDTLLENIRGLKE-GK--------A-------VQV-PIYDFKSSSRIGYRTLEVPSSRIVIIEGIYALSEKLR 175 (660)
Q Consensus 113 q~p~l~d~~tl~e~L~~L~~-Gk--------~-------I~~-PiyD~s~~~rs~~~~~~v~~a~VVIVEGilaL~deLr 175 (660)
|++.+|+.+++.+|+..... .+ . +.+ ...+...++.++++.+++..++.++.++.+++.||+.
T Consensus 86 Q~~~l~p~~tv~enl~~~l~~~~~~~~~~~~~v~~~l~~~gL~~~~~~~~~~LSgGq~QRvaLARAL~~~P~llLLDEP~ 165 (362)
T TIGR03258 86 QNYALFPHLKVEDNVAFGLRAQKMPKADIAERVADALKLVGLGDAAAHLPAQLSGGMQQRIAIARAIAIEPDVLLLDEPL 165 (362)
T ss_pred CCcccCCCCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHhcCCCchhhCChhhCCHHHHHHHHHHHHHhcCCCEEEEcCcc
Confidence 99999999999999974221 10 0 011 1234445566778888999999999999999999999
Q ss_pred CCCCE
Q 006117 176 PLIDL 180 (660)
Q Consensus 176 ~llDl 180 (660)
..+|.
T Consensus 166 s~LD~ 170 (362)
T TIGR03258 166 SALDA 170 (362)
T ss_pred ccCCH
Confidence 99997
No 55
>COG1137 YhbG ABC-type (unclassified) transport system, ATPase component [General function prediction only]
Probab=99.49 E-value=5.7e-15 Score=146.56 Aligned_cols=158 Identities=19% Similarity=0.199 Sum_probs=124.6
Q ss_pred eccceeeeecCceEEEEecceeeccCCcceEEEEECCCCCcHHHHHHHHHHhC-CCceEEEecCccccc--------ccc
Q 006117 38 PIEDTLSFEKGFFIVIRACQLLAQKNHGIILVGVAGPSGAGKTVFTEKVLNFM-PSIAVITMDNYNDSS--------RII 108 (660)
Q Consensus 38 ~~~~~ls~~~g~~~vL~~Isl~i~~ge~~~IIGI~GpSGSGKSTLak~L~~lL-p~~g~I~lDg~~~~~--------~~i 108 (660)
....++...++.+.+++++||.+.+|+ +||+.|||||||||...++.++. |+.|.|.+|+.+... ..+
T Consensus 5 L~a~~l~K~y~kr~Vv~~Vsl~v~~GE---iVGLLGPNGAGKTT~Fymi~Glv~~d~G~i~ld~~diT~lPm~~RArlGi 81 (243)
T COG1137 5 LVAENLAKSYKKRKVVNDVSLEVNSGE---IVGLLGPNGAGKTTTFYMIVGLVRPDSGKILLDDEDITKLPMHKRARLGI 81 (243)
T ss_pred EEehhhhHhhCCeeeeeeeeEEEcCCc---EEEEECCCCCCceeEEEEEEEEEecCCceEEECCcccccCChHHHhhcCc
Confidence 455667777788999999999999999 99999999999999999999998 899999999986543 458
Q ss_pred cccCCCCCCCchhhHHHHHHhhhcCccc------------------cc-ccccccccccccceeeecCCccEEEEeccee
Q 006117 109 DGNFDDPRLTDYDTLLENIRGLKEGKAV------------------QV-PIYDFKSSSRIGYRTLEVPSSRIVIIEGIYA 169 (660)
Q Consensus 109 ~~vfq~p~l~d~~tl~e~L~~L~~Gk~I------------------~~-PiyD~s~~~rs~~~~~~v~~a~VVIVEGila 169 (660)
+|.+|++..|-.+++.+|+....+-... .+ ..-+..-...++++..+++.++.+..++.|+
T Consensus 82 gYLpQE~SIFr~LtV~dNi~~vlE~~~~d~~~~~~~~~l~~LL~ef~i~hlr~~~a~sLSGGERRR~EIARaLa~~P~fi 161 (243)
T COG1137 82 GYLPQEASIFRKLTVEDNIMAVLEIREKDLKKAERKEELDALLEEFHITHLRDSKAYSLSGGERRRVEIARALAANPKFI 161 (243)
T ss_pred ccccccchHhhcCcHHHHHHHHHhhhhcchhHHHHHHHHHHHHHHhchHHHhcCcccccccchHHHHHHHHHHhcCCCEE
Confidence 8999999999999999998754321110 00 0111112234667888889999999999999
Q ss_pred ecccccCCCCEEEEEEcChhHHHHHHHHHHHHHhCC
Q 006117 170 LSEKLRPLIDLRVSVTGGVHFDLVKRVFRDIQRVGQ 205 (660)
Q Consensus 170 L~deLr~llDlkIfVdad~dirLiRRI~RDv~eRGr 205 (660)
+.||++...|.. .+.-++++.+..+.+|.
T Consensus 162 LLDEPFAGVDPi-------aV~dIq~iI~~L~~rgi 190 (243)
T COG1137 162 LLDEPFAGVDPI-------AVIDIQRIIKHLKDRGI 190 (243)
T ss_pred EecCCccCCCch-------hHHHHHHHHHHHHhCCc
Confidence 999999999973 34456777777777774
No 56
>COG2884 FtsE Predicted ATPase involved in cell division [Cell division and chromosome partitioning]
Probab=99.49 E-value=1.9e-14 Score=141.95 Aligned_cols=160 Identities=23% Similarity=0.248 Sum_probs=118.4
Q ss_pred eeeeccceeeeecCceEEEEecceeeccCCcceEEEEECCCCCcHHHHHHHHHHhC-CCceEEEecCccccc--------
Q 006117 35 EIVPIEDTLSFEKGFFIVIRACQLLAQKNHGIILVGVAGPSGAGKTVFTEKVLNFM-PSIAVITMDNYNDSS-------- 105 (660)
Q Consensus 35 ei~~~~~~ls~~~g~~~vL~~Isl~i~~ge~~~IIGI~GpSGSGKSTLak~L~~lL-p~~g~I~lDg~~~~~-------- 105 (660)
++..+.+.| ..| ..+|++|||.+++|+ ++-|+||||||||||++.|.+.. |+.|.|.++|++...
T Consensus 3 ~f~~V~k~Y--~~g-~~aL~~vs~~i~~Ge---f~fl~GpSGAGKSTllkLi~~~e~pt~G~i~~~~~dl~~l~~~~iP~ 76 (223)
T COG2884 3 RFENVSKAY--PGG-REALRDVSFHIPKGE---FVFLTGPSGAGKSTLLKLIYGEERPTRGKILVNGHDLSRLKGREIPF 76 (223)
T ss_pred eehhhhhhc--CCC-chhhhCceEeecCce---EEEEECCCCCCHHHHHHHHHhhhcCCCceEEECCeecccccccccch
Confidence 344444544 223 569999999999999 99999999999999999999998 999999999986432
Q ss_pred --ccccccCCCCCCCchhhHHHHHHhhh--cCcc---ccc---cc---------ccccccccccceeeecCCccEEEEec
Q 006117 106 --RIIDGNFDDPRLTDYDTLLENIRGLK--EGKA---VQV---PI---------YDFKSSSRIGYRTLEVPSSRIVIIEG 166 (660)
Q Consensus 106 --~~i~~vfq~p~l~d~~tl~e~L~~L~--~Gk~---I~~---Pi---------yD~s~~~rs~~~~~~v~~a~VVIVEG 166 (660)
+.++++||+..+.+..++.||++.-. .|.+ +.. .. -..-..+.++++++++..++.++-.+
T Consensus 77 LRR~IGvVFQD~rLL~~~tvyeNVA~pL~v~G~~~~~i~~rV~~~L~~VgL~~k~~~lP~~LSGGEQQRvaIARAiV~~P 156 (223)
T COG2884 77 LRRQIGVVFQDFRLLPDRTVYENVALPLRVIGKPPREIRRRVSEVLDLVGLKHKARALPSQLSGGEQQRVAIARAIVNQP 156 (223)
T ss_pred hhheeeeEeeeccccccchHhhhhhhhhhccCCCHHHHHHHHHHHHHHhccchhhhcCccccCchHHHHHHHHHHHccCC
Confidence 67899999999999999999987422 1211 110 01 11223356778888999999999999
Q ss_pred ceeecccccCCCCEEEEEEcChhHHHHHHHHHHHHHhCCCH
Q 006117 167 IYALSEKLRPLIDLRVSVTGGVHFDLVKRVFRDIQRVGQEP 207 (660)
Q Consensus 167 ilaL~deLr~llDlkIfVdad~dirLiRRI~RDv~eRGrs~ 207 (660)
.+++.||+...+|. .--.-+-++..++.+.|.|+
T Consensus 157 ~vLlADEPTGNLDp-------~~s~~im~lfeeinr~GtTV 190 (223)
T COG2884 157 AVLLADEPTGNLDP-------DLSWEIMRLFEEINRLGTTV 190 (223)
T ss_pred CeEeecCCCCCCCh-------HHHHHHHHHHHHHhhcCcEE
Confidence 99999999999986 11122333444555667765
No 57
>COG1122 CbiO ABC-type cobalt transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=99.49 E-value=1.4e-13 Score=141.16 Aligned_cols=139 Identities=17% Similarity=0.182 Sum_probs=109.7
Q ss_pred ccceeeeecCc-eEEEEecceeeccCCcceEEEEECCCCCcHHHHHHHHHHhC-CCceEEEecCcccc--------cccc
Q 006117 39 IEDTLSFEKGF-FIVIRACQLLAQKNHGIILVGVAGPSGAGKTVFTEKVLNFM-PSIAVITMDNYNDS--------SRII 108 (660)
Q Consensus 39 ~~~~ls~~~g~-~~vL~~Isl~i~~ge~~~IIGI~GpSGSGKSTLak~L~~lL-p~~g~I~lDg~~~~--------~~~i 108 (660)
..+.++|.++. ..+++++++.+++|+ .++|+|+||||||||++.|++++ |..|.|.++|.... .+.+
T Consensus 5 ~~~~l~~~y~~~~~~l~~v~~~i~~Ge---~~~i~G~nGsGKSTL~~~l~GLl~p~~G~v~~~g~~~~~~~~~~~~~~~v 81 (235)
T COG1122 5 EAENLSFRYPGRKAALKDVSLEIEKGE---RVLLIGPNGSGKSTLLKLLNGLLKPTSGEVLVDGLDTSSEKSLLELRQKV 81 (235)
T ss_pred EEEEEEEEcCCCceeeeeeEEEECCCC---EEEEECCCCCCHHHHHHHHcCcCcCCCCEEEECCeeccchhhHHHhhcce
Confidence 34555666644 489999999999999 99999999999999999999999 88999999997533 2568
Q ss_pred cccCCCCCC-CchhhHHHHHHhhhcCcc----------------ccc-ccccccccccccceeeecCCccEEEEecceee
Q 006117 109 DGNFDDPRL-TDYDTLLENIRGLKEGKA----------------VQV-PIYDFKSSSRIGYRTLEVPSSRIVIIEGIYAL 170 (660)
Q Consensus 109 ~~vfq~p~l-~d~~tl~e~L~~L~~Gk~----------------I~~-PiyD~s~~~rs~~~~~~v~~a~VVIVEGilaL 170 (660)
+++||+|+. +-..++.+.++....... +.. ...++..+..++++.++++.+.+++.++-+++
T Consensus 82 G~VfQnpd~q~~~~tV~~evafg~~n~g~~~~e~~~rv~~~l~~vgl~~~~~r~p~~LSGGqkqRvaIA~vLa~~P~ili 161 (235)
T COG1122 82 GLVFQNPDDQLFGPTVEDEVAFGLENLGLPREEIEERVAEALELVGLEELLDRPPFNLSGGQKQRVAIAGVLAMGPEILL 161 (235)
T ss_pred EEEEECcccccccCcHHHHHhhchhhcCCCHHHHHHHHHHHHHHcCchhhccCCccccCCcceeeHHhhHHHHcCCCEEE
Confidence 999999953 344567777664332111 000 12466677888999999999999999999999
Q ss_pred cccccCCCCE
Q 006117 171 SEKLRPLIDL 180 (660)
Q Consensus 171 ~deLr~llDl 180 (660)
.||+...+|.
T Consensus 162 LDEPta~LD~ 171 (235)
T COG1122 162 LDEPTAGLDP 171 (235)
T ss_pred EcCCCCCCCH
Confidence 9999999997
No 58
>PRK11000 maltose/maltodextrin transporter ATP-binding protein; Provisional
Probab=99.48 E-value=3.8e-14 Score=154.02 Aligned_cols=138 Identities=17% Similarity=0.173 Sum_probs=110.1
Q ss_pred cceeeeecCceEEEEecceeeccCCcceEEEEECCCCCcHHHHHHHHHHhC-CCceEEEecCcccc-----cccccccCC
Q 006117 40 EDTLSFEKGFFIVIRACQLLAQKNHGIILVGVAGPSGAGKTVFTEKVLNFM-PSIAVITMDNYNDS-----SRIIDGNFD 113 (660)
Q Consensus 40 ~~~ls~~~g~~~vL~~Isl~i~~ge~~~IIGI~GpSGSGKSTLak~L~~lL-p~~g~I~lDg~~~~-----~~~i~~vfq 113 (660)
.+++++.++...++++++|.+++|+ +++|+||||||||||+++|++++ |+.|.|.++|.... .+.++++||
T Consensus 6 i~~l~~~~~~~~vl~~vsl~i~~Ge---~~~l~G~nGsGKSTLL~~iaGl~~p~~G~I~~~g~~i~~~~~~~~~i~~v~Q 82 (369)
T PRK11000 6 LRNVTKAYGDVVISKDINLDIHEGE---FVVFVGPSGCGKSTLLRMIAGLEDITSGDLFIGEKRMNDVPPAERGVGMVFQ 82 (369)
T ss_pred EEEEEEEeCCeEEEeeeEEEEcCCC---EEEEECCCCCcHHHHHHHHhCCCCCCceEEEECCEECCCCCHhHCCEEEEeC
Confidence 3455566666789999999999999 99999999999999999999998 89999999997532 245889999
Q ss_pred CCCCCchhhHHHHHHhhhc--Cc--------------cccc-ccccccccccccceeeecCCccEEEEecceeecccccC
Q 006117 114 DPRLTDYDTLLENIRGLKE--GK--------------AVQV-PIYDFKSSSRIGYRTLEVPSSRIVIIEGIYALSEKLRP 176 (660)
Q Consensus 114 ~p~l~d~~tl~e~L~~L~~--Gk--------------~I~~-PiyD~s~~~rs~~~~~~v~~a~VVIVEGilaL~deLr~ 176 (660)
++.+|+..++.+++..... +. .+.. ...+......++++.+++..++.++.++.+++.||+..
T Consensus 83 ~~~l~~~~tv~eni~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~~~~~~~LSgGq~QRvaLAraL~~~P~lLLLDEPts 162 (369)
T PRK11000 83 SYALYPHLSVAENMSFGLKLAGAKKEEINQRVNQVAEVLQLAHLLDRKPKALSGGQRQRVAIGRTLVAEPSVFLLDEPLS 162 (369)
T ss_pred CcccCCCCCHHHHHHhHHhhcCCCHHHHHHHHHHHHHHcCChhhhcCChhhCCHHHHHHHHHHHHHhcCCCEEEEeCCcc
Confidence 9999999999999864221 10 0111 11233445567788888999999999999999999999
Q ss_pred CCCE
Q 006117 177 LIDL 180 (660)
Q Consensus 177 llDl 180 (660)
.+|.
T Consensus 163 ~LD~ 166 (369)
T PRK11000 163 NLDA 166 (369)
T ss_pred cCCH
Confidence 9997
No 59
>cd03261 ABC_Org_Solvent_Resistant ABC (ATP-binding cassette) transport system involved in resistant to organic solvents; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.48 E-value=8.1e-14 Score=141.19 Aligned_cols=137 Identities=20% Similarity=0.244 Sum_probs=106.8
Q ss_pred ceeeeecCceEEEEecceeeccCCcceEEEEECCCCCcHHHHHHHHHHhC-CCceEEEecCcccc----------ccccc
Q 006117 41 DTLSFEKGFFIVIRACQLLAQKNHGIILVGVAGPSGAGKTVFTEKVLNFM-PSIAVITMDNYNDS----------SRIID 109 (660)
Q Consensus 41 ~~ls~~~g~~~vL~~Isl~i~~ge~~~IIGI~GpSGSGKSTLak~L~~lL-p~~g~I~lDg~~~~----------~~~i~ 109 (660)
+++++.++...++++++|.+++|+ ++||+|+||||||||+++|++++ |..|.|.++|.... .+.++
T Consensus 4 ~~l~~~~~~~~~l~~vs~~i~~Ge---~~~l~G~nGsGKSTLl~~l~G~~~p~~G~i~~~g~~~~~~~~~~~~~~~~~i~ 80 (235)
T cd03261 4 RGLTKSFGGRTVLKGVDLDVRRGE---ILAIIGPSGSGKSTLLRLIVGLLRPDSGEVLIDGEDISGLSEAELYRLRRRMG 80 (235)
T ss_pred EEEEEEECCEEEEeeeEEEEcCCC---EEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEEccccChhhHHHHhcceE
Confidence 445566666789999999999999 99999999999999999999998 78999999986432 13478
Q ss_pred ccCCCCCCCchhhHHHHHHhhhc---Cc--------------ccccc-cccccccccccceeeecCCccEEEEecceeec
Q 006117 110 GNFDDPRLTDYDTLLENIRGLKE---GK--------------AVQVP-IYDFKSSSRIGYRTLEVPSSRIVIIEGIYALS 171 (660)
Q Consensus 110 ~vfq~p~l~d~~tl~e~L~~L~~---Gk--------------~I~~P-iyD~s~~~rs~~~~~~v~~a~VVIVEGilaL~ 171 (660)
+++|++.+++..++.+++..... +. .+..+ ..+...+..++++.+++..+..++.++.+++.
T Consensus 81 ~v~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgG~~qrv~ia~al~~~p~llll 160 (235)
T cd03261 81 MLFQSGALFDSLTVFENVAFPLREHTRLSEEEIREIVLEKLEAVGLRGAEDLYPAELSGGMKKRVALARALALDPELLLY 160 (235)
T ss_pred EEccCcccCCCCcHHHHHHHHHhhccCCCHHHHHHHHHHHHHHcCCchhhcCChhhCCHHHHHHHHHHHHHhcCCCEEEe
Confidence 99999999888899998864211 10 00111 12333345667788888888999999999999
Q ss_pred ccccCCCCE
Q 006117 172 EKLRPLIDL 180 (660)
Q Consensus 172 deLr~llDl 180 (660)
||+...+|.
T Consensus 161 DEPt~~LD~ 169 (235)
T cd03261 161 DEPTAGLDP 169 (235)
T ss_pred cCCcccCCH
Confidence 999999997
No 60
>TIGR00960 3a0501s02 Type II (General) Secretory Pathway (IISP) Family protein.
Probab=99.47 E-value=6.8e-14 Score=139.82 Aligned_cols=137 Identities=20% Similarity=0.212 Sum_probs=105.0
Q ss_pred ceeeeecC--ceEEEEecceeeccCCcceEEEEECCCCCcHHHHHHHHHHhC-CCceEEEecCcccc----------ccc
Q 006117 41 DTLSFEKG--FFIVIRACQLLAQKNHGIILVGVAGPSGAGKTVFTEKVLNFM-PSIAVITMDNYNDS----------SRI 107 (660)
Q Consensus 41 ~~ls~~~g--~~~vL~~Isl~i~~ge~~~IIGI~GpSGSGKSTLak~L~~lL-p~~g~I~lDg~~~~----------~~~ 107 (660)
+++++.++ ...++++++|.+++|+ ++||+|+||||||||+++|++++ |..|.|.++|.... .+.
T Consensus 5 ~~l~~~~~~~~~~il~~isl~i~~Ge---~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~~~~~~ 81 (216)
T TIGR00960 5 EQVSKAYPGGHQPALDNLNFHITKGE---MVFLVGHSGAGKSTFLKLILGIEKPTRGKIRFNGQDLTRLRGREIPFLRRH 81 (216)
T ss_pred EEEEEEecCCCeeEEEeeEEEEcCCC---EEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEehhhcChhHHHHHHHh
Confidence 34444443 2469999999999999 99999999999999999999998 78999999986431 135
Q ss_pred ccccCCCCCCCchhhHHHHHHhhhc--C--------------ccccc-ccccccccccccceeeecCCccEEEEecceee
Q 006117 108 IDGNFDDPRLTDYDTLLENIRGLKE--G--------------KAVQV-PIYDFKSSSRIGYRTLEVPSSRIVIIEGIYAL 170 (660)
Q Consensus 108 i~~vfq~p~l~d~~tl~e~L~~L~~--G--------------k~I~~-PiyD~s~~~rs~~~~~~v~~a~VVIVEGilaL 170 (660)
+++++|++.+++..++.+++..... + +.+.. +..+...+..++++.+++..++.++.++.+++
T Consensus 82 i~~~~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgG~~qrv~laral~~~p~lll 161 (216)
T TIGR00960 82 IGMVFQDHRLLSDRTVYDNVAFPLRIIGVPPRDANERVSAALEKVGLEGKAHALPMQLSGGEQQRVAIARAIVHKPPLLL 161 (216)
T ss_pred ceEEecCccccccccHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCChhhhhCChhhCCHHHHHHHHHHHHHhcCCCEEE
Confidence 7899999998888899998864210 1 00111 11233344566778888888999999999999
Q ss_pred cccccCCCCE
Q 006117 171 SEKLRPLIDL 180 (660)
Q Consensus 171 ~deLr~llDl 180 (660)
.||+...+|.
T Consensus 162 lDEPt~~LD~ 171 (216)
T TIGR00960 162 ADEPTGNLDP 171 (216)
T ss_pred EeCCCCcCCH
Confidence 9999999997
No 61
>cd03255 ABC_MJ0796_Lo1CDE_FtsE This family is comprised of MJ0796 ATP-binding cassette, macrolide-specific ABC-type efflux carrier (MacAB), and proteins involved in cell division (FtsE), and release of liporoteins from the cytoplasmic membrane (LolCDE). They are clustered together phylogenetically. MacAB is an exporter that confers resistance to macrolides, while the LolCDE system is not a transporter at all. An FtsE null mutants showed filamentous growth and appeared viable on high salt medium only, indicating a role for FtsE in cell division and/or salt transport. The LolCDE complex catalyses the release of lipoproteins from the cytoplasmic membrane prior to their targeting to the outer membrane.
Probab=99.47 E-value=7.5e-14 Score=139.55 Aligned_cols=136 Identities=23% Similarity=0.228 Sum_probs=104.6
Q ss_pred eeeeecCc----eEEEEecceeeccCCcceEEEEECCCCCcHHHHHHHHHHhC-CCceEEEecCcccc-----------c
Q 006117 42 TLSFEKGF----FIVIRACQLLAQKNHGIILVGVAGPSGAGKTVFTEKVLNFM-PSIAVITMDNYNDS-----------S 105 (660)
Q Consensus 42 ~ls~~~g~----~~vL~~Isl~i~~ge~~~IIGI~GpSGSGKSTLak~L~~lL-p~~g~I~lDg~~~~-----------~ 105 (660)
++++.++. ..++++++|.+++|+ ++||+|+||||||||+++|++++ |..|.|.++|.... .
T Consensus 5 ~l~~~~~~~~~~~~il~~~s~~i~~G~---~~~l~G~nGsGKSTLl~~i~Gl~~~~~G~i~~~g~~~~~~~~~~~~~~~~ 81 (218)
T cd03255 5 NLSKTYGGGGEKVQALKGVSLSIEKGE---FVAIVGPSGSGKSTLLNILGGLDRPTSGEVRVDGTDISKLSEKELAAFRR 81 (218)
T ss_pred eeEEEecCCCcceeEEeeeEEEEcCCC---EEEEEcCCCCCHHHHHHHHhCCcCCCceeEEECCEehhhcchhHHHHHHh
Confidence 44444443 679999999999999 99999999999999999999998 78999999986432 1
Q ss_pred ccccccCCCCCCCchhhHHHHHHhhh--cCc-------c-------ccc-ccccccccccccceeeecCCccEEEEecce
Q 006117 106 RIIDGNFDDPRLTDYDTLLENIRGLK--EGK-------A-------VQV-PIYDFKSSSRIGYRTLEVPSSRIVIIEGIY 168 (660)
Q Consensus 106 ~~i~~vfq~p~l~d~~tl~e~L~~L~--~Gk-------~-------I~~-PiyD~s~~~rs~~~~~~v~~a~VVIVEGil 168 (660)
+.+++++|++.+++..++.+++.... .+. . ... +..+...+..++++.+++..++.++.++.+
T Consensus 82 ~~i~~~~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~la~al~~~p~l 161 (218)
T cd03255 82 RHIGFVFQSFNLLPDLTALENVELPLLLAGVPKKERRERAEELLERVGLGDRLNHYPSELSGGQQQRVAIARALANDPKI 161 (218)
T ss_pred hcEEEEeeccccCCCCcHHHHHHHHHhhcCCCHHHHHHHHHHHHHHcCCchhhhcChhhcCHHHHHHHHHHHHHccCCCE
Confidence 34789999999888888988876421 110 0 001 112333345566788888888999999999
Q ss_pred eecccccCCCCE
Q 006117 169 ALSEKLRPLIDL 180 (660)
Q Consensus 169 aL~deLr~llDl 180 (660)
++.||+...+|.
T Consensus 162 llLDEP~~~LD~ 173 (218)
T cd03255 162 ILADEPTGNLDS 173 (218)
T ss_pred EEEcCCcccCCH
Confidence 999999999997
No 62
>TIGR01288 nodI ATP-binding ABC transporter family nodulation protein NodI. This model does not recognize the highly divergent NodI from Azorhizobium caulinodans.
Probab=99.47 E-value=7.2e-14 Score=147.56 Aligned_cols=157 Identities=18% Similarity=0.159 Sum_probs=116.5
Q ss_pred cceeeeecCceEEEEecceeeccCCcceEEEEECCCCCcHHHHHHHHHHhC-CCceEEEecCcccc------cccccccC
Q 006117 40 EDTLSFEKGFFIVIRACQLLAQKNHGIILVGVAGPSGAGKTVFTEKVLNFM-PSIAVITMDNYNDS------SRIIDGNF 112 (660)
Q Consensus 40 ~~~ls~~~g~~~vL~~Isl~i~~ge~~~IIGI~GpSGSGKSTLak~L~~lL-p~~g~I~lDg~~~~------~~~i~~vf 112 (660)
.+++++.++...++++++|.+++|+ ++||+||||||||||+++|++++ |+.|.|.++|.... .+.+++++
T Consensus 7 ~~~l~~~~~~~~~l~~vsl~i~~Ge---~~~l~G~NGaGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~i~~v~ 83 (303)
T TIGR01288 7 LVGVSKSYGDKVVVNDLSFTIARGE---CFGLLGPNGAGKSTIARMLLGMISPDRGKITVLGEPVPSRARLARVAIGVVP 83 (303)
T ss_pred EEeEEEEeCCeEEEcceeEEEcCCc---EEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEECcccHHHHhhcEEEEe
Confidence 4566666677789999999999999 99999999999999999999998 78999999987432 24578999
Q ss_pred CCCCCCchhhHHHHHHhhhc--Ccc--------------cccc-cccccccccccceeeecCCccEEEEecceeeccccc
Q 006117 113 DDPRLTDYDTLLENIRGLKE--GKA--------------VQVP-IYDFKSSSRIGYRTLEVPSSRIVIIEGIYALSEKLR 175 (660)
Q Consensus 113 q~p~l~d~~tl~e~L~~L~~--Gk~--------------I~~P-iyD~s~~~rs~~~~~~v~~a~VVIVEGilaL~deLr 175 (660)
|++.+++..++.+++..... +.. +..+ ..+...+..++++.+++..+..++.++.+++.||+.
T Consensus 84 q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~ll~~~~l~~~~~~~~~~LSgG~~qrv~la~al~~~p~lllLDEPt 163 (303)
T TIGR01288 84 QFDNLDPEFTVRENLLVFGRYFGMSTREIEAVIPSLLEFARLESKADVRVALLSGGMKRRLTLARALINDPQLLILDEPT 163 (303)
T ss_pred ccccCCcCCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHHCCChhHhcCchhhCCHHHHHHHHHHHHHhcCCCEEEEeCCC
Confidence 99998888899998863211 100 0111 123334456667888888889999999999999999
Q ss_pred CCCCEEEEEEcChhHHHHHHHHHHHHHhCCC
Q 006117 176 PLIDLRVSVTGGVHFDLVKRVFRDIQRVGQE 206 (660)
Q Consensus 176 ~llDlkIfVdad~dirLiRRI~RDv~eRGrs 206 (660)
..+|. .....++.+.++....|.+
T Consensus 164 ~gLD~-------~~~~~l~~~l~~~~~~g~t 187 (303)
T TIGR01288 164 TGLDP-------HARHLIWERLRSLLARGKT 187 (303)
T ss_pred cCCCH-------HHHHHHHHHHHHHHhCCCE
Confidence 99997 3333444444444434443
No 63
>cd03230 ABC_DR_subfamily_A This family of ATP-binding proteins belongs to a multisubunit transporter involved in drug resistance (BcrA and DrrA), nodulation, lipid transport, and lantibiotic immunity. In bacteria and archaea, these transporters usually include an ATP-binding protein and one or two integral membrane proteins. Eukaryote systems of the ABCA subfamily display ABC domains that are quite similar to this family. The ATP-binding domain shows the highest similarity between all members of the ABC transporter family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.47 E-value=8.1e-14 Score=135.28 Aligned_cols=117 Identities=21% Similarity=0.275 Sum_probs=97.2
Q ss_pred eeeeecCceEEEEecceeeccCCcceEEEEECCCCCcHHHHHHHHHHhC-CCceEEEecCcccc------cccccccCCC
Q 006117 42 TLSFEKGFFIVIRACQLLAQKNHGIILVGVAGPSGAGKTVFTEKVLNFM-PSIAVITMDNYNDS------SRIIDGNFDD 114 (660)
Q Consensus 42 ~ls~~~g~~~vL~~Isl~i~~ge~~~IIGI~GpSGSGKSTLak~L~~lL-p~~g~I~lDg~~~~------~~~i~~vfq~ 114 (660)
++++.++...++++++|.+.+|+ +++|+|+||||||||+++|++.+ |..|.|.++|.... ...++++||+
T Consensus 5 ~l~~~~~~~~~l~~~~~~i~~Ge---~~~i~G~nGsGKStLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~i~~~~q~ 81 (173)
T cd03230 5 NLSKRYGKKTALDDISLTVEKGE---IYGLLGPNGAGKTTLIKIILGLLKPDSGEIKVLGKDIKKEPEEVKRRIGYLPEE 81 (173)
T ss_pred EEEEEECCeeeeeeeEEEEcCCc---EEEEECCCCCCHHHHHHHHhCCCCCCCeEEEECCEEcccchHhhhccEEEEecC
Confidence 44444455579999999999999 99999999999999999999998 78999999986432 1357899999
Q ss_pred CCCCchhhHHHHHHhhhcCcccccccccccccccccceeeecCCccEEEEecceeecccccCCCCE
Q 006117 115 PRLTDYDTLLENIRGLKEGKAVQVPIYDFKSSSRIGYRTLEVPSSRIVIIEGIYALSEKLRPLIDL 180 (660)
Q Consensus 115 p~l~d~~tl~e~L~~L~~Gk~I~~PiyD~s~~~rs~~~~~~v~~a~VVIVEGilaL~deLr~llDl 180 (660)
+.+++..++.+++. .++++.+++..++.++.++.+++.||+...+|.
T Consensus 82 ~~~~~~~tv~~~~~-------------------LS~G~~qrv~laral~~~p~illlDEPt~~LD~ 128 (173)
T cd03230 82 PSLYENLTVRENLK-------------------LSGGMKQRLALAQALLHDPELLILDEPTSGLDP 128 (173)
T ss_pred CccccCCcHHHHhh-------------------cCHHHHHHHHHHHHHHcCCCEEEEeCCccCCCH
Confidence 99888888998875 344566667777888888889999999999997
No 64
>cd03269 ABC_putative_ATPase This subfamily is involved in drug resistance, nodulation, lipid transport, and bacteriocin and lantibiotic immunity. In eubacteria and archaea, the typical organization consists of one ABC and one or two IMs. Eukaryote systems of the ABCA subfamily display ABC domains strongly similar to this family. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region in addition to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.47 E-value=7.8e-14 Score=138.84 Aligned_cols=156 Identities=18% Similarity=0.243 Sum_probs=113.6
Q ss_pred ceeeeecCceEEEEecceeeccCCcceEEEEECCCCCcHHHHHHHHHHhC-CCceEEEecCcccc---cccccccCCCCC
Q 006117 41 DTLSFEKGFFIVIRACQLLAQKNHGIILVGVAGPSGAGKTVFTEKVLNFM-PSIAVITMDNYNDS---SRIIDGNFDDPR 116 (660)
Q Consensus 41 ~~ls~~~g~~~vL~~Isl~i~~ge~~~IIGI~GpSGSGKSTLak~L~~lL-p~~g~I~lDg~~~~---~~~i~~vfq~p~ 116 (660)
+++++.++...++++++|.+.+|+ +++|+|+||||||||+++|++++ |..|.|.++|.... .+.+++++|++.
T Consensus 4 ~~l~~~~~~~~~l~~v~~~i~~G~---~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~i~~~~q~~~ 80 (210)
T cd03269 4 ENVTKRFGRVTALDDISFSVEKGE---IFGLLGPNGAGKTTTIRMILGIILPDSGEVLFDGKPLDIAARNRIGYLPEERG 80 (210)
T ss_pred EEEEEEECCEEEEeeeEEEEcCCc---EEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCCchhHHHHccEEEeccCCc
Confidence 345555566779999999999999 99999999999999999999998 79999999997542 245789999999
Q ss_pred CCchhhHHHHHHhhhc--Cc-------c-------ccc-ccccccccccccceeeecCCccEEEEecceeecccccCCCC
Q 006117 117 LTDYDTLLENIRGLKE--GK-------A-------VQV-PIYDFKSSSRIGYRTLEVPSSRIVIIEGIYALSEKLRPLID 179 (660)
Q Consensus 117 l~d~~tl~e~L~~L~~--Gk-------~-------I~~-PiyD~s~~~rs~~~~~~v~~a~VVIVEGilaL~deLr~llD 179 (660)
+++..++.+++..... +. . ... +..+...+..++++..++..+..++.++.+++.||+...+|
T Consensus 81 ~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrl~la~al~~~p~~lllDEP~~~LD 160 (210)
T cd03269 81 LYPKMKVIDQLVYLAQLKGLKKEEARRRIDEWLERLELSEYANKRVEELSKGNQQKVQFIAAVIHDPELLILDEPFSGLD 160 (210)
T ss_pred CCcCCcHHHHHHHHHHHcCCChHHHHHHHHHHHHHcCChHHHhCcHhhCCHHHHHHHHHHHHHhcCCCEEEEeCCCcCCC
Confidence 8888899988754321 10 0 000 11122234456677777888888999999999999999999
Q ss_pred EEEEEEcChhHHHHHHHHHHHHHhCCC
Q 006117 180 LRVSVTGGVHFDLVKRVFRDIQRVGQE 206 (660)
Q Consensus 180 lkIfVdad~dirLiRRI~RDv~eRGrs 206 (660)
. ...+.+.++.+.+..+|.+
T Consensus 161 ~-------~~~~~~~~~l~~~~~~~~t 180 (210)
T cd03269 161 P-------VNVELLKDVIRELARAGKT 180 (210)
T ss_pred H-------HHHHHHHHHHHHHHHCCCE
Confidence 7 3334444444444434443
No 65
>COG4555 NatA ABC-type Na+ transport system, ATPase component [Energy production and conversion / Inorganic ion transport and metabolism]
Probab=99.46 E-value=1.2e-14 Score=144.47 Aligned_cols=140 Identities=19% Similarity=0.268 Sum_probs=106.3
Q ss_pred eeeeeccceeeeecCce-EEEEecceeeccCCcceEEEEECCCCCcHHHHHHHHHHhC-CCceEEEecCccccc------
Q 006117 34 YEIVPIEDTLSFEKGFF-IVIRACQLLAQKNHGIILVGVAGPSGAGKTVFTEKVLNFM-PSIAVITMDNYNDSS------ 105 (660)
Q Consensus 34 ~ei~~~~~~ls~~~g~~-~vL~~Isl~i~~ge~~~IIGI~GpSGSGKSTLak~L~~lL-p~~g~I~lDg~~~~~------ 105 (660)
.++..+.++| +.. .++++|+|.++.|+ ++||.|+|||||||++++|+.++ |+.|.|.+||++...
T Consensus 2 l~v~~l~K~y----~~~v~AvrdVSF~ae~Ge---i~GlLG~NGAGKTT~LRmiatlL~P~~G~v~idg~d~~~~p~~vr 74 (245)
T COG4555 2 LEVTDLTKSY----GSKVQAVRDVSFEAEEGE---ITGLLGENGAGKTTLLRMIATLLIPDSGKVTIDGVDTVRDPSFVR 74 (245)
T ss_pred eeeeehhhhc----cCHHhhhhheeEEeccce---EEEEEcCCCCCchhHHHHHHHhccCCCceEEEeecccccChHHHh
Confidence 3444455554 444 48999999999999 99999999999999999999999 999999999986432
Q ss_pred ccccccCCCCCCCchhhHHHHHHhhhc-----Cccccc------------ccccccccccccceeeecCCccEEEEecce
Q 006117 106 RIIDGNFDDPRLTDYDTLLENIRGLKE-----GKAVQV------------PIYDFKSSSRIGYRTLEVPSSRIVIIEGIY 168 (660)
Q Consensus 106 ~~i~~vfq~p~l~d~~tl~e~L~~L~~-----Gk~I~~------------PiyD~s~~~rs~~~~~~v~~a~VVIVEGil 168 (660)
+.++..|..-.+++.++++|||..+.. +..++. ...|...+..+.+..+++..++.++-++..
T Consensus 75 r~IGVl~~e~glY~RlT~rEnl~~Fa~L~~l~~~~~kari~~l~k~l~l~~~~~rRv~~~S~G~kqkV~iARAlvh~P~i 154 (245)
T COG4555 75 RKIGVLFGERGLYARLTARENLKYFARLNGLSRKEIKARIAELSKRLQLLEYLDRRVGEFSTGMKQKVAIARALVHDPSI 154 (245)
T ss_pred hhcceecCCcChhhhhhHHHHHHHHHHHhhhhhhHHHHHHHHHHHHhChHHHHHHHHhhhchhhHHHHHHHHHHhcCCCe
Confidence 568889988899999999999975432 111111 011222222333455677888889999999
Q ss_pred eecccccCCCCE
Q 006117 169 ALSEKLRPLIDL 180 (660)
Q Consensus 169 aL~deLr~llDl 180 (660)
++.||+...+|+
T Consensus 155 ~vlDEP~sGLDi 166 (245)
T COG4555 155 LVLDEPTSGLDI 166 (245)
T ss_pred EEEcCCCCCccH
Confidence 999999999998
No 66
>cd03218 ABC_YhbG The ABC transporters belonging to the YhbG family are similar to members of the Mj1267_LivG family, which is involved in the transport of branched-chain amino acids. The genes yhbG and yhbN are located in a single operon and may function together in cell envelope during biogenesis. YhbG is the putative ATP-binding cassette component and YhbN is the putative periplasmic-binding protein. Depletion of each gene product leads to growth arrest, irreversible cell damage and loss of viability in E. coli. The YhbG homolog (NtrA) is essential in Rhizobium meliloti, a symbiotic nitrogen-fixing bacterium.
Probab=99.46 E-value=1.2e-13 Score=139.35 Aligned_cols=156 Identities=21% Similarity=0.248 Sum_probs=114.0
Q ss_pred ceeeeecCceEEEEecceeeccCCcceEEEEECCCCCcHHHHHHHHHHhC-CCceEEEecCcccc--------ccccccc
Q 006117 41 DTLSFEKGFFIVIRACQLLAQKNHGIILVGVAGPSGAGKTVFTEKVLNFM-PSIAVITMDNYNDS--------SRIIDGN 111 (660)
Q Consensus 41 ~~ls~~~g~~~vL~~Isl~i~~ge~~~IIGI~GpSGSGKSTLak~L~~lL-p~~g~I~lDg~~~~--------~~~i~~v 111 (660)
+++++.++...++++++|.+.+|+ ++||+|+||||||||+++|++++ |..|.|.++|.... ...++++
T Consensus 4 ~~l~~~~~~~~~l~~vs~~i~~Ge---~~~l~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~~i~~~ 80 (232)
T cd03218 4 ENLSKRYGKRKVVNGVSLSVKQGE---IVGLLGPNGAGKTTTFYMIVGLVKPDSGKILLDGQDITKLPMHKRARLGIGYL 80 (232)
T ss_pred EEEEEEeCCEEeeccceeEecCCc---EEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEecccCCHhHHHhccEEEe
Confidence 445556666789999999999999 99999999999999999999998 78999999987431 1347889
Q ss_pred CCCCCCCchhhHHHHHHhhhc--Cc-------c-------ccc-ccccccccccccceeeecCCccEEEEecceeecccc
Q 006117 112 FDDPRLTDYDTLLENIRGLKE--GK-------A-------VQV-PIYDFKSSSRIGYRTLEVPSSRIVIIEGIYALSEKL 174 (660)
Q Consensus 112 fq~p~l~d~~tl~e~L~~L~~--Gk-------~-------I~~-PiyD~s~~~rs~~~~~~v~~a~VVIVEGilaL~deL 174 (660)
+|++.+++..++.+++..... +. . +.. ...+...+..++++.+++..+..++.++.+++.||+
T Consensus 81 ~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrl~la~al~~~p~llllDEP 160 (232)
T cd03218 81 PQEASIFRKLTVEENILAVLEIRGLSKKEREEKLEELLEEFHITHLRKSKASSLSGGERRRVEIARALATNPKFLLLDEP 160 (232)
T ss_pred cCCccccccCcHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCChhhhhCChhhCCHHHHHHHHHHHHHhcCCCEEEecCC
Confidence 999999888899998864211 10 0 001 112233344566777788888999999999999999
Q ss_pred cCCCCEEEEEEcChhHHHHHHHHHHHHHhCCC
Q 006117 175 RPLIDLRVSVTGGVHFDLVKRVFRDIQRVGQE 206 (660)
Q Consensus 175 r~llDlkIfVdad~dirLiRRI~RDv~eRGrs 206 (660)
...+|. ...+.+.++.+.+.+.|.+
T Consensus 161 t~~LD~-------~~~~~~~~~l~~~~~~~~t 185 (232)
T cd03218 161 FAGVDP-------IAVQDIQKIIKILKDRGIG 185 (232)
T ss_pred cccCCH-------HHHHHHHHHHHHHHHCCCE
Confidence 999997 3333444444444444443
No 67
>cd03265 ABC_DrrA DrrA is the ATP-binding protein component of a bacterial exporter complex that confers resistance to the antibiotics daunorubicin and doxorubicin. In addition to DrrA, the complex includes an integral membrane protein called DrrB. DrrA belongs to the ABC family of transporters and shares sequence and functional similarities with a protein found in cancer cells called P-glycoprotein. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region in addition to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.46 E-value=1.2e-13 Score=138.63 Aligned_cols=137 Identities=20% Similarity=0.205 Sum_probs=105.9
Q ss_pred ceeeeecCceEEEEecceeeccCCcceEEEEECCCCCcHHHHHHHHHHhC-CCceEEEecCcccc------cccccccCC
Q 006117 41 DTLSFEKGFFIVIRACQLLAQKNHGIILVGVAGPSGAGKTVFTEKVLNFM-PSIAVITMDNYNDS------SRIIDGNFD 113 (660)
Q Consensus 41 ~~ls~~~g~~~vL~~Isl~i~~ge~~~IIGI~GpSGSGKSTLak~L~~lL-p~~g~I~lDg~~~~------~~~i~~vfq 113 (660)
+++++.++...++++++|.+.+|+ ++||+|+||||||||+++|++.+ |+.|.|.++|.... .+.++++||
T Consensus 4 ~~~~~~~~~~~il~~vs~~i~~Ge---~~~i~G~nGsGKSTLl~~i~G~~~~~~G~i~~~g~~~~~~~~~~~~~i~~~~q 80 (220)
T cd03265 4 ENLVKKYGDFEAVRGVSFRVRRGE---IFGLLGPNGAGKTTTIKMLTTLLKPTSGRATVAGHDVVREPREVRRRIGIVFQ 80 (220)
T ss_pred EEEEEEECCEEeeeceeEEECCCC---EEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEecCcChHHHhhcEEEecC
Confidence 344555566789999999999999 99999999999999999999998 78999999986432 135789999
Q ss_pred CCCCCchhhHHHHHHhhhc--Cc--------------cccc-ccccccccccccceeeecCCccEEEEecceeecccccC
Q 006117 114 DPRLTDYDTLLENIRGLKE--GK--------------AVQV-PIYDFKSSSRIGYRTLEVPSSRIVIIEGIYALSEKLRP 176 (660)
Q Consensus 114 ~p~l~d~~tl~e~L~~L~~--Gk--------------~I~~-PiyD~s~~~rs~~~~~~v~~a~VVIVEGilaL~deLr~ 176 (660)
++.+++..++.+++..... +. .... +..+...+..++++.+++..+..++.++.+++.||+..
T Consensus 81 ~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qr~~la~al~~~p~llllDEPt~ 160 (220)
T cd03265 81 DLSVDDELTGWENLYIHARLYGVPGAERRERIDELLDFVGLLEAADRLVKTYSGGMRRRLEIARSLVHRPEVLFLDEPTI 160 (220)
T ss_pred CccccccCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCHHHhhCChhhCCHHHHHHHHHHHHHhcCCCEEEEcCCcc
Confidence 9988888888888754211 10 0111 11233344566678888888899999999999999999
Q ss_pred CCCE
Q 006117 177 LIDL 180 (660)
Q Consensus 177 llDl 180 (660)
.+|.
T Consensus 161 ~LD~ 164 (220)
T cd03265 161 GLDP 164 (220)
T ss_pred CCCH
Confidence 9997
No 68
>PRK09493 glnQ glutamine ABC transporter ATP-binding protein; Reviewed
Probab=99.45 E-value=1.1e-13 Score=140.51 Aligned_cols=137 Identities=20% Similarity=0.163 Sum_probs=104.9
Q ss_pred ceeeeecCceEEEEecceeeccCCcceEEEEECCCCCcHHHHHHHHHHhC-CCceEEEecCcccc---------cccccc
Q 006117 41 DTLSFEKGFFIVIRACQLLAQKNHGIILVGVAGPSGAGKTVFTEKVLNFM-PSIAVITMDNYNDS---------SRIIDG 110 (660)
Q Consensus 41 ~~ls~~~g~~~vL~~Isl~i~~ge~~~IIGI~GpSGSGKSTLak~L~~lL-p~~g~I~lDg~~~~---------~~~i~~ 110 (660)
+++++.++...++++++|.+++|+ ++||+|+||||||||+++|++.+ |..|.|.++|.... .+.+++
T Consensus 5 ~~l~~~~~~~~il~~~s~~i~~Ge---~~~l~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~~i~~ 81 (240)
T PRK09493 5 KNVSKHFGPTQVLHNIDLNIDQGE---VVVIIGPSGSGKSTLLRCINKLEEITSGDLIVDGLKVNDPKVDERLIRQEAGM 81 (240)
T ss_pred EeEEEEECCeEEeeeeeEEEcCCc---EEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEECCcCChhHHHHhhceEE
Confidence 445555566789999999999999 99999999999999999999998 78999999997532 134788
Q ss_pred cCCCCCCCchhhHHHHHHhhh---cC--c------------cccc-ccccccccccccceeeecCCccEEEEecceeecc
Q 006117 111 NFDDPRLTDYDTLLENIRGLK---EG--K------------AVQV-PIYDFKSSSRIGYRTLEVPSSRIVIIEGIYALSE 172 (660)
Q Consensus 111 vfq~p~l~d~~tl~e~L~~L~---~G--k------------~I~~-PiyD~s~~~rs~~~~~~v~~a~VVIVEGilaL~d 172 (660)
++|++.+++..++.+++.... .+ . .... +..+......++++.+++..+..++.++.+++.|
T Consensus 82 ~~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~LS~G~~qrv~la~al~~~p~llllD 161 (240)
T PRK09493 82 VFQQFYLFPHLTALENVMFGPLRVRGASKEEAEKQARELLAKVGLAERAHHYPSELSGGQQQRVAIARALAVKPKLMLFD 161 (240)
T ss_pred EecccccCCCCcHHHHHHhHHHHhcCCCHHHHHHHHHHHHHHcCChHHHhcChhhcCHHHHHHHHHHHHHhcCCCEEEEc
Confidence 999998888788888875321 01 0 0001 1123333445666777888888999999999999
Q ss_pred cccCCCCE
Q 006117 173 KLRPLIDL 180 (660)
Q Consensus 173 eLr~llDl 180 (660)
|+...+|.
T Consensus 162 EP~~~LD~ 169 (240)
T PRK09493 162 EPTSALDP 169 (240)
T ss_pred CCcccCCH
Confidence 99999997
No 69
>PRK11607 potG putrescine transporter ATP-binding subunit; Provisional
Probab=99.45 E-value=1.2e-13 Score=150.71 Aligned_cols=138 Identities=20% Similarity=0.155 Sum_probs=111.5
Q ss_pred cceeeeecCceEEEEecceeeccCCcceEEEEECCCCCcHHHHHHHHHHhC-CCceEEEecCcccc-----cccccccCC
Q 006117 40 EDTLSFEKGFFIVIRACQLLAQKNHGIILVGVAGPSGAGKTVFTEKVLNFM-PSIAVITMDNYNDS-----SRIIDGNFD 113 (660)
Q Consensus 40 ~~~ls~~~g~~~vL~~Isl~i~~ge~~~IIGI~GpSGSGKSTLak~L~~lL-p~~g~I~lDg~~~~-----~~~i~~vfq 113 (660)
.+++++.++...++++++|.+++|+ +++|+||||||||||+++|+++. |+.|.|.++|.... .+.++++||
T Consensus 22 l~~v~~~~~~~~~l~~vsl~i~~Ge---~~~llGpsGsGKSTLLr~IaGl~~p~~G~I~i~g~~i~~~~~~~r~ig~vfQ 98 (377)
T PRK11607 22 IRNLTKSFDGQHAVDDVSLTIYKGE---IFALLGASGCGKSTLLRMLAGFEQPTAGQIMLDGVDLSHVPPYQRPINMMFQ 98 (377)
T ss_pred EEeEEEEECCEEEEeeeEEEEcCCC---EEEEECCCCCcHHHHHHHHhCCCCCCceEEEECCEECCCCCHHHCCEEEEeC
Confidence 3455555566789999999999999 99999999999999999999998 89999999997532 256899999
Q ss_pred CCCCCchhhHHHHHHhhhc-Cc--------c-------ccc-ccccccccccccceeeecCCccEEEEecceeecccccC
Q 006117 114 DPRLTDYDTLLENIRGLKE-GK--------A-------VQV-PIYDFKSSSRIGYRTLEVPSSRIVIIEGIYALSEKLRP 176 (660)
Q Consensus 114 ~p~l~d~~tl~e~L~~L~~-Gk--------~-------I~~-PiyD~s~~~rs~~~~~~v~~a~VVIVEGilaL~deLr~ 176 (660)
++.+|+.+++.+|+..... .+ . +.. +..+...+..++++.+++..++.++.++.+++.||+..
T Consensus 99 ~~~lfp~ltv~eNi~~~l~~~~~~~~~~~~~v~~~l~~l~L~~~~~~~~~~LSgGq~QRVaLARAL~~~P~lLLLDEP~s 178 (377)
T PRK11607 99 SYALFPHMTVEQNIAFGLKQDKLPKAEIASRVNEMLGLVHMQEFAKRKPHQLSGGQRQRVALARSLAKRPKLLLLDEPMG 178 (377)
T ss_pred CCccCCCCCHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCchhhcCChhhCCHHHHHHHHHHHHHhcCCCEEEEeCCcc
Confidence 9999999999999974221 10 0 111 12344455667788889999999999999999999999
Q ss_pred CCCE
Q 006117 177 LIDL 180 (660)
Q Consensus 177 llDl 180 (660)
.+|.
T Consensus 179 ~LD~ 182 (377)
T PRK11607 179 ALDK 182 (377)
T ss_pred cCCH
Confidence 9997
No 70
>cd03259 ABC_Carb_Solutes_like ABC Carbohydrate and Solute Transporters-like subgroup. This family is comprised of proteins involved in the transport of apparently unrelated solutes and proteins specific for di- and oligosaccharides and polyols. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.45 E-value=1.1e-13 Score=138.07 Aligned_cols=137 Identities=23% Similarity=0.217 Sum_probs=105.1
Q ss_pred ceeeeecCceEEEEecceeeccCCcceEEEEECCCCCcHHHHHHHHHHhC-CCceEEEecCcccc-----cccccccCCC
Q 006117 41 DTLSFEKGFFIVIRACQLLAQKNHGIILVGVAGPSGAGKTVFTEKVLNFM-PSIAVITMDNYNDS-----SRIIDGNFDD 114 (660)
Q Consensus 41 ~~ls~~~g~~~vL~~Isl~i~~ge~~~IIGI~GpSGSGKSTLak~L~~lL-p~~g~I~lDg~~~~-----~~~i~~vfq~ 114 (660)
+++++.++...+++++||.+++|+ ++||+|+||||||||+++|++++ |..|.|.++|.... .+.+++++|+
T Consensus 4 ~~l~~~~~~~~il~~vs~~i~~Ge---~~~i~G~nGsGKSTLl~~l~G~~~p~~G~i~~~g~~~~~~~~~~~~i~~v~q~ 80 (213)
T cd03259 4 KGLSKTYGSVRALDDLSLTVEPGE---FLALLGPSGCGKTTLLRLIAGLERPDSGEILIDGRDVTGVPPERRNIGMVFQD 80 (213)
T ss_pred eeeEEEeCCeeeecceeEEEcCCc---EEEEECCCCCCHHHHHHHHhCCCCCCCeEEEECCEEcCcCchhhccEEEEcCc
Confidence 345555556779999999999999 99999999999999999999998 78999999986432 2357899999
Q ss_pred CCCCchhhHHHHHHhhhc--C---c-----------cccc-ccccccccccccceeeecCCccEEEEecceeecccccCC
Q 006117 115 PRLTDYDTLLENIRGLKE--G---K-----------AVQV-PIYDFKSSSRIGYRTLEVPSSRIVIIEGIYALSEKLRPL 177 (660)
Q Consensus 115 p~l~d~~tl~e~L~~L~~--G---k-----------~I~~-PiyD~s~~~rs~~~~~~v~~a~VVIVEGilaL~deLr~l 177 (660)
+.+++..++.+++..... + . .... +..+......++++.+++..++.++.++.+++.||+...
T Consensus 81 ~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgG~~qrl~la~al~~~p~~lllDEPt~~ 160 (213)
T cd03259 81 YALFPHLTVAENIAFGLKLRGVPKAEIRARVRELLELVGLEGLLNRYPHELSGGQQQRVALARALAREPSLLLLDEPLSA 160 (213)
T ss_pred hhhccCCcHHHHHHhHHHHcCCCHHHHHHHHHHHHHHcCChhhhhcChhhCCHHHHHHHHHHHHHhcCCCEEEEcCCccc
Confidence 988888888888753211 0 0 0111 112223344566777888888899999999999999999
Q ss_pred CCE
Q 006117 178 IDL 180 (660)
Q Consensus 178 lDl 180 (660)
+|.
T Consensus 161 LD~ 163 (213)
T cd03259 161 LDA 163 (213)
T ss_pred CCH
Confidence 997
No 71
>cd03296 ABC_CysA_sulfate_importer Part of the ABC transporter complex cysAWTP involved in sulfate import. Responsible for energy coupling to the transport system. The complex is composed of two ATP-binding proteins (cysA), two transmembrane proteins (cysT and cysW), and a solute-binding protein (cysP). ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.45 E-value=1.5e-13 Score=139.78 Aligned_cols=138 Identities=21% Similarity=0.215 Sum_probs=106.3
Q ss_pred cceeeeecCceEEEEecceeeccCCcceEEEEECCCCCcHHHHHHHHHHhC-CCceEEEecCcccc-----cccccccCC
Q 006117 40 EDTLSFEKGFFIVIRACQLLAQKNHGIILVGVAGPSGAGKTVFTEKVLNFM-PSIAVITMDNYNDS-----SRIIDGNFD 113 (660)
Q Consensus 40 ~~~ls~~~g~~~vL~~Isl~i~~ge~~~IIGI~GpSGSGKSTLak~L~~lL-p~~g~I~lDg~~~~-----~~~i~~vfq 113 (660)
.+++++.++...++++++|.+++|+ ++||+|+||||||||+++|++++ |..|.|.++|.... .+.+++++|
T Consensus 5 ~~~l~~~~~~~~il~~vs~~i~~Ge---~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~i~~v~q 81 (239)
T cd03296 5 VRNVSKRFGDFVALDDVSLDIPSGE---LVALLGPSGSGKTTLLRLIAGLERPDSGTILFGGEDATDVPVQERNVGFVFQ 81 (239)
T ss_pred EEeEEEEECCEEeeeeeeEEEcCCC---EEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEECCcCCccccceEEEec
Confidence 4556666666789999999999999 99999999999999999999998 78999999986432 235789999
Q ss_pred CCCCCchhhHHHHHHhhhc--Cc-----------cc-------cc-ccccccccccccceeeecCCccEEEEecceeecc
Q 006117 114 DPRLTDYDTLLENIRGLKE--GK-----------AV-------QV-PIYDFKSSSRIGYRTLEVPSSRIVIIEGIYALSE 172 (660)
Q Consensus 114 ~p~l~d~~tl~e~L~~L~~--Gk-----------~I-------~~-PiyD~s~~~rs~~~~~~v~~a~VVIVEGilaL~d 172 (660)
++.+++..++.+++..... +. .+ .. +..+......++++.+++..+..++.++.+++.|
T Consensus 82 ~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrl~la~al~~~p~llllD 161 (239)
T cd03296 82 HYALFRHMTVFDNVAFGLRVKPRSERPPEAEIRAKVHELLKLVQLDWLADRYPAQLSGGQRQRVALARALAVEPKVLLLD 161 (239)
T ss_pred CCcccCCCCHHHHHhhhhhhccccccCCHHHHHHHHHHHHHHcCChhhhhcChhhCCHHHHHHHHHHHHHhcCCCEEEEc
Confidence 9988888889888864211 00 00 00 1112233445667778888888999999999999
Q ss_pred cccCCCCE
Q 006117 173 KLRPLIDL 180 (660)
Q Consensus 173 eLr~llDl 180 (660)
|+...+|.
T Consensus 162 EP~~~LD~ 169 (239)
T cd03296 162 EPFGALDA 169 (239)
T ss_pred CCcccCCH
Confidence 99999997
No 72
>TIGR03608 L_ocin_972_ABC putative bacteriocin export ABC transporter, lactococcin 972 group. A gene pair with a fairly wide distribution consists of a polypeptide related to the lactococcin 972 (see TIGR01653) and multiple-membrane-spanning putative immunity protein (see TIGR01654). This model represents a small clade within the ABC transporters that regularly are found adjacent to these bacteriocin system gene pairs and are likely serve as export proteins.
Probab=99.45 E-value=8.7e-14 Score=137.74 Aligned_cols=136 Identities=16% Similarity=0.153 Sum_probs=103.8
Q ss_pred eeeeecCceEEEEecceeeccCCcceEEEEECCCCCcHHHHHHHHHHhC-CCceEEEecCcccc-----------ccccc
Q 006117 42 TLSFEKGFFIVIRACQLLAQKNHGIILVGVAGPSGAGKTVFTEKVLNFM-PSIAVITMDNYNDS-----------SRIID 109 (660)
Q Consensus 42 ~ls~~~g~~~vL~~Isl~i~~ge~~~IIGI~GpSGSGKSTLak~L~~lL-p~~g~I~lDg~~~~-----------~~~i~ 109 (660)
++++.++...++++++|.+++|+ ++||+|+||||||||+++|++++ |..|.|.++|.... .+.++
T Consensus 3 ~l~~~~~~~~~l~~vs~~i~~Ge---~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~~~~i~ 79 (206)
T TIGR03608 3 NISKKFGDKIILDDLNLTIEKGK---MYAIIGESGSGKSTLLNIIGLLEKFDSGQVYLNGKETPPLNSKKASKFRREKLG 79 (206)
T ss_pred ceEEEECCEEEEeceEEEEeCCc---EEEEECCCCCCHHHHHHHHhcCCCCCCeEEEECCEEccccchhhHHHHHHhCee
Confidence 44555566679999999999999 99999999999999999999998 78999999987521 13578
Q ss_pred ccCCCCCCCchhhHHHHHHhhhc--C-------c-------cccc-ccccccccccccceeeecCCccEEEEecceeecc
Q 006117 110 GNFDDPRLTDYDTLLENIRGLKE--G-------K-------AVQV-PIYDFKSSSRIGYRTLEVPSSRIVIIEGIYALSE 172 (660)
Q Consensus 110 ~vfq~p~l~d~~tl~e~L~~L~~--G-------k-------~I~~-PiyD~s~~~rs~~~~~~v~~a~VVIVEGilaL~d 172 (660)
+++|++.+++..++.+++..... + + .... ...+...+..++++..++..++.++-++.+++.|
T Consensus 80 ~~~q~~~~~~~~t~~e~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~lS~G~~qr~~laral~~~p~llllD 159 (206)
T TIGR03608 80 YLFQNFALIENETVEENLDLGLKYKKLSKKEKREKKKEALEKVGLNLKLKQKIYELSGGEQQRVALARAILKDPPLILAD 159 (206)
T ss_pred EEecchhhccCCcHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCchhhhcCChhhCCHHHHHHHHHHHHHHcCCCEEEEe
Confidence 89999998888888888764211 0 0 0001 1122333445566777788888899999999999
Q ss_pred cccCCCCE
Q 006117 173 KLRPLIDL 180 (660)
Q Consensus 173 eLr~llDl 180 (660)
|+...+|.
T Consensus 160 EPt~~LD~ 167 (206)
T TIGR03608 160 EPTGSLDP 167 (206)
T ss_pred CCcCCCCH
Confidence 99999996
No 73
>TIGR01188 drrA daunorubicin resistance ABC transporter ATP-binding subunit. This model describes daunorubicin resistance ABC transporter, ATP binding subunit in bacteria and archaea. This model is restricted in its scope to preferentially recognize the ATP binding subunit associated with effux of the drug, daunorubicin. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporter is the obligatory coupling of ATP hydrolysis to substrate translocation. The minimal configuration of bacterial ABC transport system: an ATPase or ATP binding subunit; An integral membrane protein; a hydrophilic polypetpide, which likely functions as substrate binding protein. In eukaryotes proteins of similar function include p-gyco proteins, multidrug resistance protein etc.
Probab=99.45 E-value=9.7e-14 Score=146.51 Aligned_cols=149 Identities=16% Similarity=0.167 Sum_probs=112.5
Q ss_pred CceEEEEecceeeccCCcceEEEEECCCCCcHHHHHHHHHHhC-CCceEEEecCcccc------cccccccCCCCCCCch
Q 006117 48 GFFIVIRACQLLAQKNHGIILVGVAGPSGAGKTVFTEKVLNFM-PSIAVITMDNYNDS------SRIIDGNFDDPRLTDY 120 (660)
Q Consensus 48 g~~~vL~~Isl~i~~ge~~~IIGI~GpSGSGKSTLak~L~~lL-p~~g~I~lDg~~~~------~~~i~~vfq~p~l~d~ 120 (660)
+...+++++||.+++|+ ++||+||||||||||+++|++++ |+.|.|.++|.... .+.+++++|++.+++.
T Consensus 4 ~~~~~l~~vs~~i~~Ge---~~~l~G~NGaGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~i~~~~q~~~~~~~ 80 (302)
T TIGR01188 4 GDFKAVDGVNFKVREGE---VFGFLGPNGAGKTTTIRMLTTLLRPTSGTARVAGYDVVREPRKVRRSIGIVPQYASVDED 80 (302)
T ss_pred CCeeEEeeeeEEEcCCc---EEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEEcccCHHHHHhhcEEecCCCCCCCC
Confidence 45679999999999999 99999999999999999999998 89999999997532 1357899999999998
Q ss_pred hhHHHHHHhhhc--Cc--------------ccccc-cccccccccccceeeecCCccEEEEecceeecccccCCCCEEEE
Q 006117 121 DTLLENIRGLKE--GK--------------AVQVP-IYDFKSSSRIGYRTLEVPSSRIVIIEGIYALSEKLRPLIDLRVS 183 (660)
Q Consensus 121 ~tl~e~L~~L~~--Gk--------------~I~~P-iyD~s~~~rs~~~~~~v~~a~VVIVEGilaL~deLr~llDlkIf 183 (660)
.++.+++..... +. .+..+ ..+...+..++++.+++..+..++-++.+++.||+...+|.
T Consensus 81 ~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgG~~qrv~la~al~~~p~lllLDEPt~gLD~--- 157 (302)
T TIGR01188 81 LTGRENLEMMGRLYGLPKDEAEERAEELLELFELGEAADRPVGTYSGGMRRRLDIAASLIHQPDVLFLDEPTTGLDP--- 157 (302)
T ss_pred CcHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCChhHhCCchhhCCHHHHHHHHHHHHHhcCCCEEEEeCCCcCCCH---
Confidence 999999864321 10 01111 12333445566788888888999999999999999999997
Q ss_pred EEcChhHHHHHHHHHHHHHhCCC
Q 006117 184 VTGGVHFDLVKRVFRDIQRVGQE 206 (660)
Q Consensus 184 Vdad~dirLiRRI~RDv~eRGrs 206 (660)
...+.++.+.+.+...|.+
T Consensus 158 ----~~~~~l~~~l~~~~~~g~t 176 (302)
T TIGR01188 158 ----RTRRAIWDYIRALKEEGVT 176 (302)
T ss_pred ----HHHHHHHHHHHHHHhCCCE
Confidence 3344445555555444544
No 74
>cd03293 ABC_NrtD_SsuB_transporters NrtD and SsuB are the ATP-binding subunits of the bacterial ABC-type nitrate and sulfonate transport systems, respectively. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.44 E-value=1.5e-13 Score=137.99 Aligned_cols=136 Identities=18% Similarity=0.195 Sum_probs=104.9
Q ss_pred eeeeecCc----eEEEEecceeeccCCcceEEEEECCCCCcHHHHHHHHHHhC-CCceEEEecCcccc--cccccccCCC
Q 006117 42 TLSFEKGF----FIVIRACQLLAQKNHGIILVGVAGPSGAGKTVFTEKVLNFM-PSIAVITMDNYNDS--SRIIDGNFDD 114 (660)
Q Consensus 42 ~ls~~~g~----~~vL~~Isl~i~~ge~~~IIGI~GpSGSGKSTLak~L~~lL-p~~g~I~lDg~~~~--~~~i~~vfq~ 114 (660)
++++.++. ..++++++|.+++|+ ++||+|+||||||||+++|++++ |..|.|.++|.... .+.+++++|+
T Consensus 5 ~l~~~~~~~~~~~~il~~vs~~i~~G~---~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~i~~v~q~ 81 (220)
T cd03293 5 NVSKTYGGGGGAVTALEDISLSVEEGE---FVALVGPSGCGKSTLLRIIAGLERPTSGEVLVDGEPVTGPGPDRGYVFQQ 81 (220)
T ss_pred EEEEEcCCCCcceEEEeceeEEEeCCc---EEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEECccccCcEEEEecc
Confidence 34444444 679999999999999 99999999999999999999998 78999999997542 2457899999
Q ss_pred CCCCchhhHHHHHHhhhc--C---c-----------cccc-ccccccccccccceeeecCCccEEEEecceeecccccCC
Q 006117 115 PRLTDYDTLLENIRGLKE--G---K-----------AVQV-PIYDFKSSSRIGYRTLEVPSSRIVIIEGIYALSEKLRPL 177 (660)
Q Consensus 115 p~l~d~~tl~e~L~~L~~--G---k-----------~I~~-PiyD~s~~~rs~~~~~~v~~a~VVIVEGilaL~deLr~l 177 (660)
+.+++..++.+++..... + . .... ...+...+..++++.+++..++.++.++.+++.||+...
T Consensus 82 ~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgG~~qrl~la~al~~~p~lllLDEPt~~ 161 (220)
T cd03293 82 DALLPWLTVLDNVALGLELQGVPKAEARERAEELLELVGLSGFENAYPHQLSGGMRQRVALARALAVDPDVLLLDEPFSA 161 (220)
T ss_pred cccccCCCHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCChhhhhCCcccCCHHHHHHHHHHHHHHcCCCEEEECCCCCC
Confidence 988888888888753211 1 0 0001 112333345566777888888899999999999999999
Q ss_pred CCE
Q 006117 178 IDL 180 (660)
Q Consensus 178 lDl 180 (660)
+|.
T Consensus 162 LD~ 164 (220)
T cd03293 162 LDA 164 (220)
T ss_pred CCH
Confidence 997
No 75
>cd03258 ABC_MetN_methionine_transporter MetN (also known as YusC) is an ABC-type transporter encoded by metN of the metNPQ operon in Bacillus subtilis that is involved in methionine transport. Other members of this system include the MetP permease and the MetQ substrate binding protein. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.44 E-value=1.2e-13 Score=139.62 Aligned_cols=157 Identities=22% Similarity=0.238 Sum_probs=113.1
Q ss_pred ceeeeecCce----EEEEecceeeccCCcceEEEEECCCCCcHHHHHHHHHHhC-CCceEEEecCcccc----------c
Q 006117 41 DTLSFEKGFF----IVIRACQLLAQKNHGIILVGVAGPSGAGKTVFTEKVLNFM-PSIAVITMDNYNDS----------S 105 (660)
Q Consensus 41 ~~ls~~~g~~----~vL~~Isl~i~~ge~~~IIGI~GpSGSGKSTLak~L~~lL-p~~g~I~lDg~~~~----------~ 105 (660)
+++++.++.. .++++++|.+++|+ ++||+|+||||||||+++|++++ |..|.|.++|.... .
T Consensus 5 ~~l~~~~~~~~~~~~il~~~s~~i~~Ge---~~~l~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~ 81 (233)
T cd03258 5 KNVSKVFGDTGGKVTALKDVSLSVPKGE---IFGIIGRSGAGKSTLIRCINGLERPTSGSVLVDGTDLTLLSGKELRKAR 81 (233)
T ss_pred ecceEEccCCCCceeeeecceEEEcCCC---EEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEEcccCCHHHHHHHH
Confidence 4444554443 79999999999999 99999999999999999999998 78999999987532 1
Q ss_pred ccccccCCCCCCCchhhHHHHHHhhhc--Cc--------------ccccc-cccccccccccceeeecCCccEEEEecce
Q 006117 106 RIIDGNFDDPRLTDYDTLLENIRGLKE--GK--------------AVQVP-IYDFKSSSRIGYRTLEVPSSRIVIIEGIY 168 (660)
Q Consensus 106 ~~i~~vfq~p~l~d~~tl~e~L~~L~~--Gk--------------~I~~P-iyD~s~~~rs~~~~~~v~~a~VVIVEGil 168 (660)
+.+++++|++.+++..++.+++..... +. ....+ ..+......++++.+++..+..++.++.+
T Consensus 82 ~~i~~~~q~~~~~~~~t~~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~la~al~~~p~l 161 (233)
T cd03258 82 RRIGMIFQHFNLLSSRTVFENVALPLEIAGVPKAEIEERVLELLELVGLEDKADAYPAQLSGGQKQRVGIARALANNPKV 161 (233)
T ss_pred hheEEEccCcccCCCCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHHCCChhhhhcChhhCCHHHHHHHHHHHHHhcCCCE
Confidence 347899999999888899998754211 10 01111 12223344566677788888889999999
Q ss_pred eecccccCCCCEEEEEEcChhHHHHHHHHHHHHH-hCCCH
Q 006117 169 ALSEKLRPLIDLRVSVTGGVHFDLVKRVFRDIQR-VGQEP 207 (660)
Q Consensus 169 aL~deLr~llDlkIfVdad~dirLiRRI~RDv~e-RGrs~ 207 (660)
++.||+...+|. .....+.++.++... .|.+.
T Consensus 162 llLDEP~~~LD~-------~~~~~l~~~l~~~~~~~~~tv 194 (233)
T cd03258 162 LLCDEATSALDP-------ETTQSILALLRDINRELGLTI 194 (233)
T ss_pred EEecCCCCcCCH-------HHHHHHHHHHHHHHHHcCCEE
Confidence 999999999997 334444455555443 25443
No 76
>cd03268 ABC_BcrA_bacitracin_resist The BcrA subfamily represents ABC transporters involved in peptide antibiotic resistance. Bacitracin is a dodecapeptide antibiotic produced by B. licheniformis and B. subtilis. The synthesis of bacitracin is non-ribosomally catalyzed by a multienzyme complex BcrABC. Bacitracin has potent antibiotic activity against gram-positive bacteria. The inhibition of peptidoglycan biosynthesis is the best characterized bacterial effect of bacitracin. The bacitracin resistance of B. licheniformis is mediated by the ABC transporter Bcr which is composed of two identical BcrA ATP-binding subunits and one each of the integral membrane proteins, BcrB and BcrC. B. subtilis cells carrying bcr genes on high-copy number plasmids develop collateral detergent sensitivity, a similar phenomenon in human cells with overexpressed multi-drug resistance P-glycoprotein.
Probab=99.44 E-value=1.7e-13 Score=136.21 Aligned_cols=137 Identities=22% Similarity=0.191 Sum_probs=105.7
Q ss_pred ceeeeecCceEEEEecceeeccCCcceEEEEECCCCCcHHHHHHHHHHhC-CCceEEEecCcccc-----cccccccCCC
Q 006117 41 DTLSFEKGFFIVIRACQLLAQKNHGIILVGVAGPSGAGKTVFTEKVLNFM-PSIAVITMDNYNDS-----SRIIDGNFDD 114 (660)
Q Consensus 41 ~~ls~~~g~~~vL~~Isl~i~~ge~~~IIGI~GpSGSGKSTLak~L~~lL-p~~g~I~lDg~~~~-----~~~i~~vfq~ 114 (660)
+++++.++...++++++|.+++|+ +++|+|+||||||||+++|++++ |..|.|.++|.... .+.+++++|+
T Consensus 4 ~~l~~~~~~~~~l~~~~~~i~~G~---~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~i~~~~q~ 80 (208)
T cd03268 4 NDLTKTYGKKRVLDDISLHVKKGE---IYGFLGPNGAGKTTTMKIILGLIKPDSGEITFDGKSYQKNIEALRRIGALIEA 80 (208)
T ss_pred EEEEEEECCeEeEeeeEEEEcCCc---EEEEECCCCCCHHHHHHHHhCCcCCCceEEEECCCcccchHHHHhhEEEecCC
Confidence 345555566789999999999999 99999999999999999999998 78999999997532 2357899999
Q ss_pred CCCCchhhHHHHHHhhhc--Cc---c-------cccc-cccccccccccceeeecCCccEEEEecceeecccccCCCCE
Q 006117 115 PRLTDYDTLLENIRGLKE--GK---A-------VQVP-IYDFKSSSRIGYRTLEVPSSRIVIIEGIYALSEKLRPLIDL 180 (660)
Q Consensus 115 p~l~d~~tl~e~L~~L~~--Gk---~-------I~~P-iyD~s~~~rs~~~~~~v~~a~VVIVEGilaL~deLr~llDl 180 (660)
+.+++..++.+++..... +. . .... ..+...+..++++..++..+..++.++.+++.||+...+|.
T Consensus 81 ~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~la~al~~~p~llllDEPt~~LD~ 159 (208)
T cd03268 81 PGFYPNLTARENLRLLARLLGIRKKRIDEVLDVVGLKDSAKKKVKGFSLGMKQRLGIALALLGNPDLLILDEPTNGLDP 159 (208)
T ss_pred CccCccCcHHHHHHHHHHhcCCcHHHHHHHHHHcCCHHHHhhhHhhCCHHHHHHHHHHHHHhcCCCEEEECCCcccCCH
Confidence 988888899998854321 10 0 0011 12222344566777788888899999999999999999997
No 77
>TIGR02673 FtsE cell division ATP-binding protein FtsE. This model describes FtsE, a member of the ABC transporter ATP-binding protein family. This protein, and its permease partner FtsX, localize to the division site. In a number of species, the ftsEX gene pair is located next to FtsY, the signal recognition particle-docking protein.
Probab=99.44 E-value=1.2e-13 Score=137.79 Aligned_cols=156 Identities=21% Similarity=0.240 Sum_probs=111.3
Q ss_pred ceeeeec-CceEEEEecceeeccCCcceEEEEECCCCCcHHHHHHHHHHhC-CCceEEEecCcccc----------cccc
Q 006117 41 DTLSFEK-GFFIVIRACQLLAQKNHGIILVGVAGPSGAGKTVFTEKVLNFM-PSIAVITMDNYNDS----------SRII 108 (660)
Q Consensus 41 ~~ls~~~-g~~~vL~~Isl~i~~ge~~~IIGI~GpSGSGKSTLak~L~~lL-p~~g~I~lDg~~~~----------~~~i 108 (660)
+++++.+ +...+++++||.+++|+ ++||+|+||||||||+++|++++ |..|.|.++|.... .+.+
T Consensus 5 ~~l~~~~~~~~~il~~is~~i~~G~---~~~l~G~nGsGKSTLl~~i~Gl~~~~~G~i~~~g~~~~~~~~~~~~~~~~~i 81 (214)
T TIGR02673 5 HNVSKAYPGGVAALHDVSLHIRKGE---FLFLTGPSGAGKTTLLKLLYGALTPSRGQVRIAGEDVNRLRGRQLPLLRRRI 81 (214)
T ss_pred EeeeEEeCCCceeecceeEEEcCCC---EEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEEcccCCHHHHHHHHhhe
Confidence 3444444 34579999999999999 99999999999999999999998 78999999986432 1347
Q ss_pred cccCCCCCCCchhhHHHHHHhhhc--C---c-----------cccc-ccccccccccccceeeecCCccEEEEecceeec
Q 006117 109 DGNFDDPRLTDYDTLLENIRGLKE--G---K-----------AVQV-PIYDFKSSSRIGYRTLEVPSSRIVIIEGIYALS 171 (660)
Q Consensus 109 ~~vfq~p~l~d~~tl~e~L~~L~~--G---k-----------~I~~-PiyD~s~~~rs~~~~~~v~~a~VVIVEGilaL~ 171 (660)
++++|++.+++..++.+++..... + . .... +..+......++++.+++..+..++.++.+++.
T Consensus 82 ~~~~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrl~la~al~~~p~lllL 161 (214)
T TIGR02673 82 GVVFQDFRLLPDRTVYENVALPLEVRGKKEREIQRRVGAALRQVGLEHKADAFPEQLSGGEQQRVAIARAIVNSPPLLLA 161 (214)
T ss_pred EEEecChhhccCCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCChhhhhCChhhCCHHHHHHHHHHHHHhCCCCEEEE
Confidence 889999998888888888754210 1 0 0011 111222344566777788888889999999999
Q ss_pred ccccCCCCEEEEEEcChhHHHHHHHHHHHHHhCCC
Q 006117 172 EKLRPLIDLRVSVTGGVHFDLVKRVFRDIQRVGQE 206 (660)
Q Consensus 172 deLr~llDlkIfVdad~dirLiRRI~RDv~eRGrs 206 (660)
||+...+|. .....+.++.+++.+.|.+
T Consensus 162 DEPt~~LD~-------~~~~~l~~~l~~~~~~~~t 189 (214)
T TIGR02673 162 DEPTGNLDP-------DLSERILDLLKRLNKRGTT 189 (214)
T ss_pred eCCcccCCH-------HHHHHHHHHHHHHHHcCCE
Confidence 999999997 3333444444444333433
No 78
>cd03224 ABC_TM1139_LivF_branched LivF (TM1139) is part of the LIV-I bacterial ABC-type two-component transport system that imports neutral, branched-chain amino acids. The E. coli branched-chain amino acid transporter comprises a heterodimer of ABC transporters (LivF and LivG), a heterodimer of six-helix TM domains (LivM and LivH), and one of two alternative soluble periplasmic substrate binding proteins (LivK or LivJ). ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules.
Probab=99.44 E-value=1.7e-13 Score=137.27 Aligned_cols=137 Identities=15% Similarity=0.131 Sum_probs=105.0
Q ss_pred ceeeeecCceEEEEecceeeccCCcceEEEEECCCCCcHHHHHHHHHHhC-CCceEEEecCcccc--------ccccccc
Q 006117 41 DTLSFEKGFFIVIRACQLLAQKNHGIILVGVAGPSGAGKTVFTEKVLNFM-PSIAVITMDNYNDS--------SRIIDGN 111 (660)
Q Consensus 41 ~~ls~~~g~~~vL~~Isl~i~~ge~~~IIGI~GpSGSGKSTLak~L~~lL-p~~g~I~lDg~~~~--------~~~i~~v 111 (660)
+++++.++...++++++|.+.+|+ ++||+|+||||||||+++|++++ |..|.|.++|.... .+.++++
T Consensus 4 ~~l~~~~~~~~~l~~vs~~i~~Ge---~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~~~~i~~~ 80 (222)
T cd03224 4 ENLNAGYGKSQILFGVSLTVPEGE---IVALLGRNGAGKTTLLKTIMGLLPPRSGSIRFDGRDITGLPPHERARAGIGYV 80 (222)
T ss_pred eeEEeecCCeeEeeeeeEEEcCCe---EEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEEcCCCCHHHHHhcCeEEe
Confidence 345555566679999999999999 99999999999999999999998 78999999996432 1347899
Q ss_pred CCCCCCCchhhHHHHHHhhhc--Cc------------cc-cc-ccccccccccccceeeecCCccEEEEecceeeccccc
Q 006117 112 FDDPRLTDYDTLLENIRGLKE--GK------------AV-QV-PIYDFKSSSRIGYRTLEVPSSRIVIIEGIYALSEKLR 175 (660)
Q Consensus 112 fq~p~l~d~~tl~e~L~~L~~--Gk------------~I-~~-PiyD~s~~~rs~~~~~~v~~a~VVIVEGilaL~deLr 175 (660)
||++.+++..++.+++..... +. .+ .. ...+......++++.+++..++.++.++.+++.||+.
T Consensus 81 ~q~~~~~~~~t~~~~l~~~~~~~~~~~~~~~~~~~l~~~~~l~~~~~~~~~~LS~G~~qrv~laral~~~p~llllDEPt 160 (222)
T cd03224 81 PEGRRIFPELTVEENLLLGAYARRRAKRKARLERVYELFPRLKERRKQLAGTLSGGEQQMLAIARALMSRPKLLLLDEPS 160 (222)
T ss_pred ccccccCCCCcHHHHHHHHhhhcCchhHHHHHHHHHHHHHhhhhhhhCchhhCCHHHHHHHHHHHHHhcCCCEEEECCCc
Confidence 999999988899988854211 00 01 00 1123333445667777888888899999999999999
Q ss_pred CCCCE
Q 006117 176 PLIDL 180 (660)
Q Consensus 176 ~llDl 180 (660)
..+|.
T Consensus 161 ~~LD~ 165 (222)
T cd03224 161 EGLAP 165 (222)
T ss_pred ccCCH
Confidence 99997
No 79
>PRK09473 oppD oligopeptide transporter ATP-binding component; Provisional
Probab=99.44 E-value=1.6e-13 Score=147.13 Aligned_cols=147 Identities=17% Similarity=0.242 Sum_probs=109.4
Q ss_pred CCceeeeeccceeeeecCceEEEEecceeeccCCcceEEEEECCCCCcHHHHHHHHHHhC-CC---ceEEEecCccccc-
Q 006117 31 SDRYEIVPIEDTLSFEKGFFIVIRACQLLAQKNHGIILVGVAGPSGAGKTVFTEKVLNFM-PS---IAVITMDNYNDSS- 105 (660)
Q Consensus 31 ~~~~ei~~~~~~ls~~~g~~~vL~~Isl~i~~ge~~~IIGI~GpSGSGKSTLak~L~~lL-p~---~g~I~lDg~~~~~- 105 (660)
..++++..+...|....+...+++++||.+.+|+ ++||+|+||||||||+++|++++ |. .|.|.++|.....
T Consensus 10 ~~~L~i~~l~~~~~~~~~~~~~l~~vsl~i~~Ge---~~~ivG~sGsGKSTL~~~l~Gl~~p~~~~sG~I~~~G~~i~~~ 86 (330)
T PRK09473 10 DALLDVKDLRVTFSTPDGDVTAVNDLNFSLRAGE---TLGIVGESGSGKSQTAFALMGLLAANGRIGGSATFNGREILNL 86 (330)
T ss_pred CceEEEeCeEEEEecCCCCEEEEeeeEEEEcCCC---EEEEECCCCchHHHHHHHHHcCCCCCCCCCeEEEECCEECCcC
Confidence 3455665565555333355789999999999999 99999999999999999999999 54 8999999975321
Q ss_pred ----------ccccccCCCC--CCCchhhHHHHHHh-h--hcC--------------cccccc----cccccccccccce
Q 006117 106 ----------RIIDGNFDDP--RLTDYDTLLENIRG-L--KEG--------------KAVQVP----IYDFKSSSRIGYR 152 (660)
Q Consensus 106 ----------~~i~~vfq~p--~l~d~~tl~e~L~~-L--~~G--------------k~I~~P----iyD~s~~~rs~~~ 152 (660)
+.++++||++ .+++..++.+++.. + ..+ +.+..+ .++...++.++++
T Consensus 87 ~~~~~~~~r~~~i~~v~Q~~~~~l~p~~~v~~~i~~~~~~~~~~~~~~~~~~~~~~L~~vgL~~~~~~~~~~p~~LSgG~ 166 (330)
T PRK09473 87 PEKELNKLRAEQISMIFQDPMTSLNPYMRVGEQLMEVLMLHKGMSKAEAFEESVRMLDAVKMPEARKRMKMYPHEFSGGM 166 (330)
T ss_pred CHHHHHHHhcCCEEEEEcCchhhcCCCCCHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCCChHHHhcCCcccCCHHH
Confidence 3588999998 46666677666532 1 111 011122 1234556677888
Q ss_pred eeecCCccEEEEecceeecccccCCCCE
Q 006117 153 TLEVPSSRIVIIEGIYALSEKLRPLIDL 180 (660)
Q Consensus 153 ~~~v~~a~VVIVEGilaL~deLr~llDl 180 (660)
.+++..+..++.++.+++.||+...+|.
T Consensus 167 ~QRv~IArAL~~~P~llilDEPts~LD~ 194 (330)
T PRK09473 167 RQRVMIAMALLCRPKLLIADEPTTALDV 194 (330)
T ss_pred HHHHHHHHHHHcCCCEEEEeCCCccCCH
Confidence 8889999999999999999999999997
No 80
>PRK13540 cytochrome c biogenesis protein CcmA; Provisional
Probab=99.44 E-value=8.7e-14 Score=137.92 Aligned_cols=156 Identities=14% Similarity=0.112 Sum_probs=112.7
Q ss_pred ceeeeecCceEEEEecceeeccCCcceEEEEECCCCCcHHHHHHHHHHhC-CCceEEEecCcccc------cccccccCC
Q 006117 41 DTLSFEKGFFIVIRACQLLAQKNHGIILVGVAGPSGAGKTVFTEKVLNFM-PSIAVITMDNYNDS------SRIIDGNFD 113 (660)
Q Consensus 41 ~~ls~~~g~~~vL~~Isl~i~~ge~~~IIGI~GpSGSGKSTLak~L~~lL-p~~g~I~lDg~~~~------~~~i~~vfq 113 (660)
+++++.++...++++++|.+++|+ ++||+|+||||||||+++|+++. |..|.|.++|.... .+.+++++|
T Consensus 5 ~~l~~~~~~~~il~~~s~~i~~Ge---~~~l~G~nGsGKSTLl~~i~G~~~~~~G~v~~~g~~~~~~~~~~~~~i~~~~q 81 (200)
T PRK13540 5 IELDFDYHDQPLLQQISFHLPAGG---LLHLKGSNGAGKTTLLKLIAGLLNPEKGEILFERQSIKKDLCTYQKQLCFVGH 81 (200)
T ss_pred EEEEEEeCCeeEEeeeeEEECCCC---EEEEECCCCCCHHHHHHHHhcCCCCCCeeEEECCCccccCHHHHHhheEEecc
Confidence 445555556679999999999999 99999999999999999999998 78999999997532 134678888
Q ss_pred CCCCCchhhHHHHHHhhhc--Cc---------ccccc-cccccccccccceeeecCCccEEEEecceeecccccCCCCEE
Q 006117 114 DPRLTDYDTLLENIRGLKE--GK---------AVQVP-IYDFKSSSRIGYRTLEVPSSRIVIIEGIYALSEKLRPLIDLR 181 (660)
Q Consensus 114 ~p~l~d~~tl~e~L~~L~~--Gk---------~I~~P-iyD~s~~~rs~~~~~~v~~a~VVIVEGilaL~deLr~llDlk 181 (660)
.+.+++..++.+++..... .. ....+ ..+...+..++++.+++..++.++.++.+++.||+...+|.
T Consensus 82 ~~~~~~~~tv~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~~rv~laral~~~p~~lilDEP~~~LD~- 160 (200)
T PRK13540 82 RSGINPYLTLRENCLYDIHFSPGAVGITELCRLFSLEHLIDYPCGLLSSGQKRQVALLRLWMSKAKLWLLDEPLVALDE- 160 (200)
T ss_pred ccccCcCCCHHHHHHHHHhcCcchHHHHHHHHHcCCchhhhCChhhcCHHHHHHHHHHHHHhcCCCEEEEeCCCcccCH-
Confidence 8888777888888764210 00 01111 12333344566777788888899999999999999999997
Q ss_pred EEEEcChhHHHHHHHHHHHHHhCCC
Q 006117 182 VSVTGGVHFDLVKRVFRDIQRVGQE 206 (660)
Q Consensus 182 IfVdad~dirLiRRI~RDv~eRGrs 206 (660)
...+....+.++..+.|.+
T Consensus 161 ------~~~~~l~~~l~~~~~~~~t 179 (200)
T PRK13540 161 ------LSLLTIITKIQEHRAKGGA 179 (200)
T ss_pred ------HHHHHHHHHHHHHHHcCCE
Confidence 3344444444444434433
No 81
>TIGR02315 ABC_phnC phosphonate ABC transporter, ATP-binding protein. Phosphonates are a class of phosphorus-containing organic compound with a stable direct C-P bond rather than a C-O-P linkage. A number of bacterial species have operons, typically about 14 genes in size, with genes for ATP-dependent transport of phosphonates, degradation, and regulation of the expression of the system. Members of this protein family are the ATP-binding cassette component of tripartite ABC transporters of phosphonates.
Probab=99.44 E-value=1.5e-13 Score=139.65 Aligned_cols=137 Identities=20% Similarity=0.199 Sum_probs=104.3
Q ss_pred ceeeeecC-ceEEEEecceeeccCCcceEEEEECCCCCcHHHHHHHHHHhC-CCceEEEecCcccc----------cccc
Q 006117 41 DTLSFEKG-FFIVIRACQLLAQKNHGIILVGVAGPSGAGKTVFTEKVLNFM-PSIAVITMDNYNDS----------SRII 108 (660)
Q Consensus 41 ~~ls~~~g-~~~vL~~Isl~i~~ge~~~IIGI~GpSGSGKSTLak~L~~lL-p~~g~I~lDg~~~~----------~~~i 108 (660)
+++++.++ ...+++++||.+++|+ +++|+|+||||||||+++|++++ |..|.|.++|.... .+.+
T Consensus 5 ~~l~~~~~~~~~il~~vs~~i~~Ge---~~~l~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~~~~~~i 81 (243)
T TIGR02315 5 ENLSKVYPNGKQALKNINLNINPGE---FVAIIGPSGAGKSTLLRCINRLVEPSSGSILLEGTDITKLRGKKLRKLRRRI 81 (243)
T ss_pred EeeeeecCCCcceeecceEEEcCCC---EEEEECCCCCCHHHHHHHHhCCcCCCccEEEECCEEhhhCCHHHHHHHHhhe
Confidence 44455555 5679999999999999 99999999999999999999998 78999999986432 1347
Q ss_pred cccCCCCCCCchhhHHHHHHhhhc-------------Cc----c-------ccc-ccccccccccccceeeecCCccEEE
Q 006117 109 DGNFDDPRLTDYDTLLENIRGLKE-------------GK----A-------VQV-PIYDFKSSSRIGYRTLEVPSSRIVI 163 (660)
Q Consensus 109 ~~vfq~p~l~d~~tl~e~L~~L~~-------------Gk----~-------I~~-PiyD~s~~~rs~~~~~~v~~a~VVI 163 (660)
+++||++.+++..++.+++..... .. . +.. ...+......++++.+++..+..++
T Consensus 82 ~~v~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgG~~qrv~la~al~ 161 (243)
T TIGR02315 82 GMIFQHYNLIERLTVLENVLHGRLGYKPTWRSLLGRFSEEDKERALSALERVGLADKAYQRADQLSGGQQQRVAIARALA 161 (243)
T ss_pred EEEcCCCcccccccHHHHHhhcccccccchhhhhccccHHHHHHHHHHHHHcCcHhhhcCCcccCCHHHHHHHHHHHHHh
Confidence 899999988888889888853110 00 0 000 1122233445667778888889999
Q ss_pred EecceeecccccCCCCE
Q 006117 164 IEGIYALSEKLRPLIDL 180 (660)
Q Consensus 164 VEGilaL~deLr~llDl 180 (660)
.++.+++.||+...+|.
T Consensus 162 ~~p~llllDEPt~~LD~ 178 (243)
T TIGR02315 162 QQPDLILADEPIASLDP 178 (243)
T ss_pred cCCCEEEEeCCcccCCH
Confidence 99999999999999997
No 82
>cd03219 ABC_Mj1267_LivG_branched The Mj1267/LivG ABC transporter subfamily is involved in the transport of the hydrophobic amino acids leucine, isoleucine and valine. MJ1267 is a branched-chain amino acid transporter with 29% similarity to both the LivF and LivG components of the E. coli branched-chain amino acid transporter. MJ1267 contains an insertion from residues 114 to 123 characteristic of LivG (Leucine-Isoleucine-Valine) homologs. The branched-chain amino acid transporter from E. coli comprises a heterodimer of ABCs (LivF and LivG), a heterodimer of six-helix TM domains (LivM and LivH), and one of two alternative soluble periplasmic substrate binding proteins (LivK or LivJ).
Probab=99.44 E-value=1.6e-13 Score=138.82 Aligned_cols=156 Identities=18% Similarity=0.235 Sum_probs=113.0
Q ss_pred ceeeeecCceEEEEecceeeccCCcceEEEEECCCCCcHHHHHHHHHHhC-CCceEEEecCccccc--------cccccc
Q 006117 41 DTLSFEKGFFIVIRACQLLAQKNHGIILVGVAGPSGAGKTVFTEKVLNFM-PSIAVITMDNYNDSS--------RIIDGN 111 (660)
Q Consensus 41 ~~ls~~~g~~~vL~~Isl~i~~ge~~~IIGI~GpSGSGKSTLak~L~~lL-p~~g~I~lDg~~~~~--------~~i~~v 111 (660)
+++++.++...++++++|.+++|+ ++||+|+||||||||+++|++++ |..|.|.++|..... ..++++
T Consensus 4 ~~l~~~~~~~~~l~~vsl~i~~Ge---~~~l~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~~~~i~~v 80 (236)
T cd03219 4 RGLTKRFGGLVALDDVSFSVRPGE---IHGLIGPNGAGKTTLFNLISGFLRPTSGSVLFDGEDITGLPPHEIARLGIGRT 80 (236)
T ss_pred eeeEEEECCEEEecCceEEecCCc---EEEEECCCCCCHHHHHHHHcCCCCCCCceEEECCEECCCCCHHHHHhcCEEEE
Confidence 445555566679999999999999 99999999999999999999998 789999999874321 247889
Q ss_pred CCCCCCCchhhHHHHHHhhhc--Cc-----------------c-------ccc-ccccccccccccceeeecCCccEEEE
Q 006117 112 FDDPRLTDYDTLLENIRGLKE--GK-----------------A-------VQV-PIYDFKSSSRIGYRTLEVPSSRIVII 164 (660)
Q Consensus 112 fq~p~l~d~~tl~e~L~~L~~--Gk-----------------~-------I~~-PiyD~s~~~rs~~~~~~v~~a~VVIV 164 (660)
+|++.+++..++.+++..... +. . ... ...+...+..++++.+++..+..++.
T Consensus 81 ~q~~~l~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgG~~qrv~la~al~~ 160 (236)
T cd03219 81 FQIPRLFPELTVLENVMVAAQARTGSGLLLARARREEREARERAEELLERVGLADLADRPAGELSYGQQRRLEIARALAT 160 (236)
T ss_pred ecccccccCCCHHHHHHHHHhhccccccccccccccHHHHHHHHHHHHHHcCccchhhCChhhCCHHHHHHHHHHHHHhc
Confidence 999999988899998754211 00 0 000 11222334456677778888888999
Q ss_pred ecceeecccccCCCCEEEEEEcChhHHHHHHHHHHHHHhCCC
Q 006117 165 EGIYALSEKLRPLIDLRVSVTGGVHFDLVKRVFRDIQRVGQE 206 (660)
Q Consensus 165 EGilaL~deLr~llDlkIfVdad~dirLiRRI~RDv~eRGrs 206 (660)
++.+++.||+...+|. .....+..+.+++...|.+
T Consensus 161 ~p~llllDEPt~~LD~-------~~~~~l~~~l~~~~~~~~t 195 (236)
T cd03219 161 DPKLLLLDEPAAGLNP-------EETEELAELIRELRERGIT 195 (236)
T ss_pred CCCEEEEcCCcccCCH-------HHHHHHHHHHHHHHHCCCE
Confidence 9999999999999997 3333444444444434444
No 83
>COG1117 PstB ABC-type phosphate transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=99.43 E-value=1.9e-13 Score=137.01 Aligned_cols=139 Identities=18% Similarity=0.164 Sum_probs=111.3
Q ss_pred eccceeeeecCceEEEEecceeeccCCcceEEEEECCCCCcHHHHHHHHHHhC---C---CceEEEecCccccc------
Q 006117 38 PIEDTLSFEKGFFIVIRACQLLAQKNHGIILVGVAGPSGAGKTVFTEKVLNFM---P---SIAVITMDNYNDSS------ 105 (660)
Q Consensus 38 ~~~~~ls~~~g~~~vL~~Isl~i~~ge~~~IIGI~GpSGSGKSTLak~L~~lL---p---~~g~I~lDg~~~~~------ 105 (660)
...+++++-+|.+.+|++|++.++++. +.+++||||||||||++++.... | -.|.|.++|.+...
T Consensus 8 ~~~~~l~~yYg~~~aL~~i~l~i~~~~---VTAlIGPSGcGKST~LR~lNRmndl~~~~r~~G~v~~~g~ni~~~~~d~~ 84 (253)
T COG1117 8 IEVRDLNLYYGDKHALKDINLDIPKNK---VTALIGPSGCGKSTLLRCLNRMNDLIPGARVEGEVLLDGKNIYDPKVDVV 84 (253)
T ss_pred eEecceeEEECchhhhccCceeccCCc---eEEEECCCCcCHHHHHHHHHhhcccCcCceEEEEEEECCeeccCCCCCHH
Confidence 445678888899999999999999999 99999999999999999999885 4 36999999975432
Q ss_pred ---ccccccCCCCCCCchhhHHHHHHhhhc--C-c---------------ccccc---cccccccccccceeeecCCccE
Q 006117 106 ---RIIDGNFDDPRLTDYDTLLENIRGLKE--G-K---------------AVQVP---IYDFKSSSRIGYRTLEVPSSRI 161 (660)
Q Consensus 106 ---~~i~~vfq~p~l~d~~tl~e~L~~L~~--G-k---------------~I~~P---iyD~s~~~rs~~~~~~v~~a~V 161 (660)
+.++++||.|+-|+ +++.+|+..-.+ | + ..+-. ..+.+....++++++++..++.
T Consensus 85 ~lRr~vGMVFQkPnPFp-~SIydNVayG~r~~g~~~~~ldeiVe~sLk~AaLWdEVKDrL~~sa~~LSGGQQQRLcIARa 163 (253)
T COG1117 85 ELRRRVGMVFQKPNPFP-MSIYDNVAYGLRLHGIKDKELDEIVESSLKKAALWDEVKDRLHKSALGLSGGQQQRLCIARA 163 (253)
T ss_pred HHHHHheeeccCCCCCC-chHHHHHHHhHHhhccchHHHHHHHHHHHHHhHhHHHhHHHhhCCccCCChhHHHHHHHHHH
Confidence 56899999999999 899999864321 1 0 01111 1233334467789999999999
Q ss_pred EEEecceeecccccCCCCE
Q 006117 162 VIIEGIYALSEKLRPLIDL 180 (660)
Q Consensus 162 VIVEGilaL~deLr~llDl 180 (660)
+.+++-.++.||+...+|.
T Consensus 164 lAv~PeVlLmDEPtSALDP 182 (253)
T COG1117 164 LAVKPEVLLMDEPTSALDP 182 (253)
T ss_pred HhcCCcEEEecCcccccCc
Confidence 9999999999999999997
No 84
>PRK09536 btuD corrinoid ABC transporter ATPase; Reviewed
Probab=99.43 E-value=1.7e-13 Score=150.46 Aligned_cols=159 Identities=20% Similarity=0.195 Sum_probs=119.8
Q ss_pred ccceeeeecCceEEEEecceeeccCCcceEEEEECCCCCcHHHHHHHHHHhC-CCceEEEecCcccc-------cccccc
Q 006117 39 IEDTLSFEKGFFIVIRACQLLAQKNHGIILVGVAGPSGAGKTVFTEKVLNFM-PSIAVITMDNYNDS-------SRIIDG 110 (660)
Q Consensus 39 ~~~~ls~~~g~~~vL~~Isl~i~~ge~~~IIGI~GpSGSGKSTLak~L~~lL-p~~g~I~lDg~~~~-------~~~i~~ 110 (660)
..+++++.++...+|++++|.+++|+ ++||+||||||||||+++|++++ |..|.|.++|.... .+.+++
T Consensus 5 ~~~nls~~y~~~~vL~~vs~~i~~Ge---iv~liGpNGaGKSTLLk~LaGll~p~sG~I~l~G~~i~~~~~~~~~~~ig~ 81 (402)
T PRK09536 5 DVSDLSVEFGDTTVLDGVDLSVREGS---LVGLVGPNGAGKTTLLRAINGTLTPTAGTVLVAGDDVEALSARAASRRVAS 81 (402)
T ss_pred EEeeEEEEECCEEEEEeeEEEECCCC---EEEEECCCCchHHHHHHHHhcCCCCCCcEEEECCEEcCcCCHHHHhcceEE
Confidence 34666777778899999999999999 99999999999999999999998 78999999997532 245789
Q ss_pred cCCCCCCCchhhHHHHHHhhhc---------Cc-----------cccc-ccccccccccccceeeecCCccEEEEeccee
Q 006117 111 NFDDPRLTDYDTLLENIRGLKE---------GK-----------AVQV-PIYDFKSSSRIGYRTLEVPSSRIVIIEGIYA 169 (660)
Q Consensus 111 vfq~p~l~d~~tl~e~L~~L~~---------Gk-----------~I~~-PiyD~s~~~rs~~~~~~v~~a~VVIVEGila 169 (660)
++|++.++...++.+++..... .. .+.. ...+......++++.+++..++.++-++.++
T Consensus 82 v~q~~~l~~~~tv~e~v~~~~~~~~~~~~~~~~~~~~~v~~~le~vgl~~~~~~~~~~LSgGerQRv~IArAL~~~P~iL 161 (402)
T PRK09536 82 VPQDTSLSFEFDVRQVVEMGRTPHRSRFDTWTETDRAAVERAMERTGVAQFADRPVTSLSGGERQRVLLARALAQATPVL 161 (402)
T ss_pred EccCCCCCCCCCHHHHHHhccchhcccccCCCHHHHHHHHHHHHHcCCchhhcCChhhCCHHHHHHHHHHHHHHcCCCEE
Confidence 9999988777888888754210 00 0011 1123334455667888888899999999999
Q ss_pred ecccccCCCCEEEEEEcChhHHHHHHHHHHHHHhCCCH
Q 006117 170 LSEKLRPLIDLRVSVTGGVHFDLVKRVFRDIQRVGQEP 207 (660)
Q Consensus 170 L~deLr~llDlkIfVdad~dirLiRRI~RDv~eRGrs~ 207 (660)
+.||+...+|. .....++.+.+++.+.|.+.
T Consensus 162 LLDEPtsgLD~-------~~~~~l~~lL~~l~~~g~TI 192 (402)
T PRK09536 162 LLDEPTASLDI-------NHQVRTLELVRRLVDDGKTA 192 (402)
T ss_pred EEECCcccCCH-------HHHHHHHHHHHHHHhcCCEE
Confidence 99999999997 34445556666655445443
No 85
>cd03266 ABC_NatA_sodium_exporter NatA is the ATPase component of a bacterial ABC-type Na+ transport system called NatAB, which catalyzes ATP-dependent electrogenic Na+ extrusion without mechanically coupled proton or K+ uptake. NatB possess six putative membrane spanning regions at its C-terminus. In B. subtilus, NatAB is inducible by agents such as ethanol and protonophores, which lower the protonmotive force across the membrane. The closest sequence similarity to NatA is exhibited by DrrA of the two-component daunomycin- and doxorubicin-efflux system. Hence, the functional NatAB is presumably assembled with two copies of a single ATP-binding protein and a single intergral membrane protein.
Probab=99.43 E-value=1.3e-13 Score=137.92 Aligned_cols=137 Identities=19% Similarity=0.222 Sum_probs=104.7
Q ss_pred ceeeeecCce----EEEEecceeeccCCcceEEEEECCCCCcHHHHHHHHHHhC-CCceEEEecCcccc------ccccc
Q 006117 41 DTLSFEKGFF----IVIRACQLLAQKNHGIILVGVAGPSGAGKTVFTEKVLNFM-PSIAVITMDNYNDS------SRIID 109 (660)
Q Consensus 41 ~~ls~~~g~~----~vL~~Isl~i~~ge~~~IIGI~GpSGSGKSTLak~L~~lL-p~~g~I~lDg~~~~------~~~i~ 109 (660)
+++++.++.. .++++++|.+++|+ +++|+|+||||||||+++|++++ |..|.|.++|.... .+.++
T Consensus 5 ~~v~~~~~~~~~~~~il~~~sl~i~~Ge---~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~~i~ 81 (218)
T cd03266 5 DALTKRFRDVKKTVQAVDGVSFTVKPGE---VTGLLGPNGAGKTTTLRMLAGLLEPDAGFATVDGFDVVKEPAEARRRLG 81 (218)
T ss_pred EEEEEecCCCCccceeecceEEEEcCCc---EEEEECCCCCCHHHHHHHHhCCcCCCCceEEECCEEcccCHHHHHhhEE
Confidence 4455555544 79999999999999 99999999999999999999998 78999999987532 13578
Q ss_pred ccCCCCCCCchhhHHHHHHhhhc--Cc--------------ccccc-cccccccccccceeeecCCccEEEEecceeecc
Q 006117 110 GNFDDPRLTDYDTLLENIRGLKE--GK--------------AVQVP-IYDFKSSSRIGYRTLEVPSSRIVIIEGIYALSE 172 (660)
Q Consensus 110 ~vfq~p~l~d~~tl~e~L~~L~~--Gk--------------~I~~P-iyD~s~~~rs~~~~~~v~~a~VVIVEGilaL~d 172 (660)
+++|++.+++..++.+++..... +. ....+ ..+...+..++++.+++..++.++.++.+++.|
T Consensus 82 ~~~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~laral~~~p~illlD 161 (218)
T cd03266 82 FVSDSTGLYDRLTARENLEYFAGLYGLKGDELTARLEELADRLGMEELLDRRVGGFSTGMRQKVAIARALVHDPPVLLLD 161 (218)
T ss_pred EecCCcccCcCCCHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCHHHHhhhhhhcCHHHHHHHHHHHHHhcCCCEEEEc
Confidence 99999998888899998854211 10 00111 122233345567777888888999999999999
Q ss_pred cccCCCCE
Q 006117 173 KLRPLIDL 180 (660)
Q Consensus 173 eLr~llDl 180 (660)
|+...+|.
T Consensus 162 EPt~~LD~ 169 (218)
T cd03266 162 EPTTGLDV 169 (218)
T ss_pred CCCcCCCH
Confidence 99999997
No 86
>COG0410 LivF ABC-type branched-chain amino acid transport systems, ATPase component [Amino acid transport and metabolism]
Probab=99.43 E-value=1.9e-13 Score=138.33 Aligned_cols=140 Identities=19% Similarity=0.181 Sum_probs=112.6
Q ss_pred eccceeeeecCceEEEEecceeeccCCcceEEEEECCCCCcHHHHHHHHHHhC-CCceEEEecCccccc--------ccc
Q 006117 38 PIEDTLSFEKGFFIVIRACQLLAQKNHGIILVGVAGPSGAGKTVFTEKVLNFM-PSIAVITMDNYNDSS--------RII 108 (660)
Q Consensus 38 ~~~~~ls~~~g~~~vL~~Isl~i~~ge~~~IIGI~GpSGSGKSTLak~L~~lL-p~~g~I~lDg~~~~~--------~~i 108 (660)
...+.++..||..++|++|||.+++|+ +++|+|+||+||||+++.|+++. +..|.|.++|.+... ..+
T Consensus 4 L~v~~l~~~YG~~~~L~gvsl~v~~Ge---iv~llG~NGaGKTTlLkti~Gl~~~~~G~I~~~G~dit~~p~~~r~r~Gi 80 (237)
T COG0410 4 LEVENLSAGYGKIQALRGVSLEVERGE---IVALLGRNGAGKTTLLKTIMGLVRPRSGRIIFDGEDITGLPPHERARLGI 80 (237)
T ss_pred eeEEeEeecccceeEEeeeeeEEcCCC---EEEEECCCCCCHHHHHHHHhCCCCCCCeeEEECCeecCCCCHHHHHhCCe
Confidence 445677888899999999999999999 99999999999999999999999 578999999986543 457
Q ss_pred cccCCCCCCCchhhHHHHHHhh---hcCccccc----------c----cccccccccccceeeecCCccEEEEecceeec
Q 006117 109 DGNFDDPRLTDYDTLLENIRGL---KEGKAVQV----------P----IYDFKSSSRIGYRTLEVPSSRIVIIEGIYALS 171 (660)
Q Consensus 109 ~~vfq~p~l~d~~tl~e~L~~L---~~Gk~I~~----------P----iyD~s~~~rs~~~~~~v~~a~VVIVEGilaL~ 171 (660)
++++|....|+.+++.|||..- ...+.... | ..+..-++.++++++.++.++.++-.+.+++.
T Consensus 81 ~~VPegR~iF~~LTVeENL~~g~~~~~~~~~~~~~~e~v~~lFP~Lker~~~~aG~LSGGEQQMLAiaRALm~~PklLLL 160 (237)
T COG0410 81 AYVPEGRRIFPRLTVEENLLLGAYARRDKEAQERDLEEVYELFPRLKERRNQRAGTLSGGEQQMLAIARALMSRPKLLLL 160 (237)
T ss_pred EeCcccccchhhCcHHHHHhhhhhcccccccccccHHHHHHHChhHHHHhcCcccCCChHHHHHHHHHHHHhcCCCEEEe
Confidence 8999999999999999999742 11111111 2 22333445667788888899999999999999
Q ss_pred ccccCCCCE
Q 006117 172 EKLRPLIDL 180 (660)
Q Consensus 172 deLr~llDl 180 (660)
||+...+-.
T Consensus 161 DEPs~GLaP 169 (237)
T COG0410 161 DEPSEGLAP 169 (237)
T ss_pred cCCccCcCH
Confidence 999887754
No 87
>PRK11124 artP arginine transporter ATP-binding subunit; Provisional
Probab=99.43 E-value=2.1e-13 Score=138.72 Aligned_cols=158 Identities=16% Similarity=0.145 Sum_probs=115.2
Q ss_pred cceeeeecCceEEEEecceeeccCCcceEEEEECCCCCcHHHHHHHHHHhC-CCceEEEecCcccc-------------c
Q 006117 40 EDTLSFEKGFFIVIRACQLLAQKNHGIILVGVAGPSGAGKTVFTEKVLNFM-PSIAVITMDNYNDS-------------S 105 (660)
Q Consensus 40 ~~~ls~~~g~~~vL~~Isl~i~~ge~~~IIGI~GpSGSGKSTLak~L~~lL-p~~g~I~lDg~~~~-------------~ 105 (660)
.+++++.++...++++++|.+++|+ ++||+|+||||||||+++|++.+ |..|.|.++|.... .
T Consensus 5 ~~~l~~~~~~~~il~~vsl~i~~Ge---~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~~~~ 81 (242)
T PRK11124 5 LNGINCFYGAHQALFDITLDCPQGE---TLVLLGPSGAGKSSLLRVLNLLEMPRSGTLNIAGNHFDFSKTPSDKAIRELR 81 (242)
T ss_pred EEeeEEEECCeeeEeeeeeEEcCCC---EEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEecccccccchhhHHHHH
Confidence 4556666666789999999999999 99999999999999999999998 78999999986431 1
Q ss_pred ccccccCCCCCCCchhhHHHHHHhhh---cCc--------------ccccc-cccccccccccceeeecCCccEEEEecc
Q 006117 106 RIIDGNFDDPRLTDYDTLLENIRGLK---EGK--------------AVQVP-IYDFKSSSRIGYRTLEVPSSRIVIIEGI 167 (660)
Q Consensus 106 ~~i~~vfq~p~l~d~~tl~e~L~~L~---~Gk--------------~I~~P-iyD~s~~~rs~~~~~~v~~a~VVIVEGi 167 (660)
+.+++++|++.+++..++.+++.... .+. ....+ ..+......++++.+++..++.++.++.
T Consensus 82 ~~i~~~~q~~~~~~~~tv~e~i~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~LS~G~~qrv~laral~~~p~ 161 (242)
T PRK11124 82 RNVGMVFQQYNLWPHLTVQQNLIEAPCRVLGLSKDQALARAEKLLERLRLKPYADRFPLHLSGGQQQRVAIARALMMEPQ 161 (242)
T ss_pred hheEEEecCccccCCCcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCChhhhhCChhhCCHHHHHHHHHHHHHhcCCC
Confidence 34788999999988889998885310 010 01111 1233334456677778888889999999
Q ss_pred eeecccccCCCCEEEEEEcChhHHHHHHHHHHHHHhCCCH
Q 006117 168 YALSEKLRPLIDLRVSVTGGVHFDLVKRVFRDIQRVGQEP 207 (660)
Q Consensus 168 laL~deLr~llDlkIfVdad~dirLiRRI~RDv~eRGrs~ 207 (660)
+++.||+...+|. ........+.+++.+.|.+.
T Consensus 162 llilDEPt~~LD~-------~~~~~l~~~l~~~~~~~~ti 194 (242)
T PRK11124 162 VLLFDEPTAALDP-------EITAQIVSIIRELAETGITQ 194 (242)
T ss_pred EEEEcCCCCcCCH-------HHHHHHHHHHHHHHHcCCEE
Confidence 9999999999997 33444444555544445443
No 88
>cd03229 ABC_Class3 This class is comprised of all BPD (Binding Protein Dependent) systems that are largely represented in archaea and eubacteria and are primarily involved in scavenging solutes from the environment. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.43 E-value=1.5e-13 Score=134.01 Aligned_cols=120 Identities=24% Similarity=0.254 Sum_probs=96.9
Q ss_pred ceeeeecCceEEEEecceeeccCCcceEEEEECCCCCcHHHHHHHHHHhC-CCceEEEecCcccc---------cccccc
Q 006117 41 DTLSFEKGFFIVIRACQLLAQKNHGIILVGVAGPSGAGKTVFTEKVLNFM-PSIAVITMDNYNDS---------SRIIDG 110 (660)
Q Consensus 41 ~~ls~~~g~~~vL~~Isl~i~~ge~~~IIGI~GpSGSGKSTLak~L~~lL-p~~g~I~lDg~~~~---------~~~i~~ 110 (660)
+++++.++...++++++|.+++|+ ++||+|+||||||||+++|++.+ |..|.|.++|.... .+.+++
T Consensus 4 ~~l~~~~~~~~~l~~i~~~i~~G~---~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~~i~~ 80 (178)
T cd03229 4 KNVSKRYGQKTVLNDVSLNIEAGE---IVALLGPSGSGKSTLLRCIAGLEEPDSGSILIDGEDLTDLEDELPPLRRRIGM 80 (178)
T ss_pred EEEEEEECCeEEEeeeeEEEcCCC---EEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEEccccchhHHHHhhcEEE
Confidence 344555556679999999999999 99999999999999999999998 68999999986432 134778
Q ss_pred cCCCCCCCchhhHHHHHHhhhcCcccccccccccccccccceeeecCCccEEEEecceeecccccCCCCE
Q 006117 111 NFDDPRLTDYDTLLENIRGLKEGKAVQVPIYDFKSSSRIGYRTLEVPSSRIVIIEGIYALSEKLRPLIDL 180 (660)
Q Consensus 111 vfq~p~l~d~~tl~e~L~~L~~Gk~I~~PiyD~s~~~rs~~~~~~v~~a~VVIVEGilaL~deLr~llDl 180 (660)
++|++.+++..++.+++... .++++.+++..+..++.++.+++.||+...+|.
T Consensus 81 ~~q~~~~~~~~t~~~~l~~~-----------------lS~G~~qr~~la~al~~~p~llilDEP~~~LD~ 133 (178)
T cd03229 81 VFQDFALFPHLTVLENIALG-----------------LSGGQQQRVALARALAMDPDVLLLDEPTSALDP 133 (178)
T ss_pred EecCCccCCCCCHHHheeec-----------------CCHHHHHHHHHHHHHHCCCCEEEEeCCcccCCH
Confidence 99999888878888876542 334555667777778888888888999999997
No 89
>PRK11629 lolD lipoprotein transporter ATP-binding subunit; Provisional
Probab=99.43 E-value=2.4e-13 Score=137.66 Aligned_cols=147 Identities=16% Similarity=0.178 Sum_probs=108.2
Q ss_pred eEEEEecceeeccCCcceEEEEECCCCCcHHHHHHHHHHhC-CCceEEEecCcccc-----------cccccccCCCCCC
Q 006117 50 FIVIRACQLLAQKNHGIILVGVAGPSGAGKTVFTEKVLNFM-PSIAVITMDNYNDS-----------SRIIDGNFDDPRL 117 (660)
Q Consensus 50 ~~vL~~Isl~i~~ge~~~IIGI~GpSGSGKSTLak~L~~lL-p~~g~I~lDg~~~~-----------~~~i~~vfq~p~l 117 (660)
..++++++|.+++|+ +++|+|+||||||||+++|++++ |..|.|.++|.... .+.++++||++.+
T Consensus 22 ~~il~~isl~i~~Ge---~~~l~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~i~~~~~~~~~~~~~~~i~~v~q~~~~ 98 (233)
T PRK11629 22 TDVLHNVSFSIGEGE---MMAIVGSSGSGKSTLLHLLGGLDTPTSGDVIFNGQPMSKLSSAAKAELRNQKLGFIYQFHHL 98 (233)
T ss_pred eeeEEeeEEEEcCCc---EEEEECCCCCCHHHHHHHHhcCCCCCceEEEECCEEcCcCCHHHHHHHHhccEEEEecCccc
Confidence 579999999999999 99999999999999999999998 79999999986432 1347899999988
Q ss_pred CchhhHHHHHHhhh--cC---c-----------ccccc-cccccccccccceeeecCCccEEEEecceeecccccCCCCE
Q 006117 118 TDYDTLLENIRGLK--EG---K-----------AVQVP-IYDFKSSSRIGYRTLEVPSSRIVIIEGIYALSEKLRPLIDL 180 (660)
Q Consensus 118 ~d~~tl~e~L~~L~--~G---k-----------~I~~P-iyD~s~~~rs~~~~~~v~~a~VVIVEGilaL~deLr~llDl 180 (660)
++..++.+++.... .+ + ....+ ..+...+..++++.+++..+..++.++.+++.||+...+|.
T Consensus 99 ~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~LSgG~~qrl~la~al~~~p~lllLDEPt~~LD~ 178 (233)
T PRK11629 99 LPDFTALENVAMPLLIGKKKPAEINSRALEMLAAVGLEHRANHRPSELSGGERQRVAIARALVNNPRLVLADEPTGNLDA 178 (233)
T ss_pred CCCCCHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCchhhhCChhhCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCH
Confidence 88889999875421 01 0 01111 12223344566777788888899999999999999999997
Q ss_pred EEEEEcChhHHHHHHHHHHHHH-hCCC
Q 006117 181 RVSVTGGVHFDLVKRVFRDIQR-VGQE 206 (660)
Q Consensus 181 kIfVdad~dirLiRRI~RDv~e-RGrs 206 (660)
.....+..+.++... .|.+
T Consensus 179 -------~~~~~l~~~l~~~~~~~g~t 198 (233)
T PRK11629 179 -------RNADSIFQLLGELNRLQGTA 198 (233)
T ss_pred -------HHHHHHHHHHHHHHHhCCCE
Confidence 333444444454432 3544
No 90
>cd03262 ABC_HisP_GlnQ_permeases HisP and GlnQ are the ATP-binding components of the bacterial periplasmic histidine and glutamine permeases, repectively. Histidine permease is a multisubunit complex containing the HisQ and HisM integral membrane subunits and two copies of HisP. HisP has properties intermediate between those of integral and peripheral membrane proteins and is accessible from both sides of the membrane, presumably by its interaction with HisQ and HisM. The two HisP subunits form a homodimer within the complex. The domain structure of the amino acid uptake systems is typical for prokaryote extracellular solute binding protein-dependent uptake systems. All of the amino acid uptake systems also have at least one, and in a few cases, two extracellular solute binding proteins located in the periplasm of Gram-negative bacteria, or attached to the cell membrane of Gram-positive bacteria. The best-studied member of the PAAT (polar amino acid transport) family is the HisJQM
Probab=99.43 E-value=2e-13 Score=135.82 Aligned_cols=156 Identities=22% Similarity=0.252 Sum_probs=113.6
Q ss_pred ceeeeecCceEEEEecceeeccCCcceEEEEECCCCCcHHHHHHHHHHhC-CCceEEEecCcccc---------cccccc
Q 006117 41 DTLSFEKGFFIVIRACQLLAQKNHGIILVGVAGPSGAGKTVFTEKVLNFM-PSIAVITMDNYNDS---------SRIIDG 110 (660)
Q Consensus 41 ~~ls~~~g~~~vL~~Isl~i~~ge~~~IIGI~GpSGSGKSTLak~L~~lL-p~~g~I~lDg~~~~---------~~~i~~ 110 (660)
+++++.++...++++++|.+++|+ ++||+|+||||||||+++|++++ |..|.|.++|.... .+.+++
T Consensus 4 ~~l~~~~~~~~~l~~~s~~i~~G~---~~~l~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~~i~~ 80 (213)
T cd03262 4 KNLHKSFGDFHVLKGIDLTVKKGE---VVVIIGPSGSGKSTLLRCINLLEEPDSGTIIIDGLKLTDDKKNINELRQKVGM 80 (213)
T ss_pred EEEEEEECCeEeecCceEEECCCC---EEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEECCccchhHHHHHhcceE
Confidence 445566666789999999999999 99999999999999999999998 78999999986431 134789
Q ss_pred cCCCCCCCchhhHHHHHHhhh---cCc---c-----------ccc-ccccccccccccceeeecCCccEEEEecceeecc
Q 006117 111 NFDDPRLTDYDTLLENIRGLK---EGK---A-----------VQV-PIYDFKSSSRIGYRTLEVPSSRIVIIEGIYALSE 172 (660)
Q Consensus 111 vfq~p~l~d~~tl~e~L~~L~---~Gk---~-----------I~~-PiyD~s~~~rs~~~~~~v~~a~VVIVEGilaL~d 172 (660)
++|++.+++..++.+++.... .+. . ... +..+...+..++++.+++..++.++.++.+++.|
T Consensus 81 ~~q~~~~~~~~t~~e~l~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~la~al~~~p~llllD 160 (213)
T cd03262 81 VFQQFNLFPHLTVLENITLAPIKVKGMSKAEAEERALELLEKVGLADKADAYPAQLSGGQQQRVAIARALAMNPKVMLFD 160 (213)
T ss_pred EecccccCCCCcHHHHHHhHHHHhcCCCHHHHHHHHHHHHHHcCCHhHhhhCccccCHHHHHHHHHHHHHhcCCCEEEEe
Confidence 999999888788888875421 110 0 001 1122333445566777788888899999999999
Q ss_pred cccCCCCEEEEEEcChhHHHHHHHHHHHHHhCCC
Q 006117 173 KLRPLIDLRVSVTGGVHFDLVKRVFRDIQRVGQE 206 (660)
Q Consensus 173 eLr~llDlkIfVdad~dirLiRRI~RDv~eRGrs 206 (660)
|+...+|. .....+..+.+++.+.|.+
T Consensus 161 EP~~~LD~-------~~~~~l~~~l~~~~~~~~t 187 (213)
T cd03262 161 EPTSALDP-------ELVGEVLDVMKDLAEEGMT 187 (213)
T ss_pred CCccCCCH-------HHHHHHHHHHHHHHHcCCE
Confidence 99999996 3344455555555444443
No 91
>TIGR02211 LolD_lipo_ex lipoprotein releasing system, ATP-binding protein. This model represents LolD, a member of the ABC transporter family (pfam00005). LolD is involved in localization of lipoproteins in some bacteria. It works with a transmembrane protein LolC, which in some species is a paralogous pair LolC and LolE. Depending on whether the residue immediately following the new, modified N-terminal Cys residue, the nascent lipoprotein may be carried further by LolA and LolB to the outer membrane, or remain at the inner membrane. The top scoring proteins excluded by this model include homologs from the archaeal genus Methanosarcina.
Probab=99.43 E-value=2.2e-13 Score=136.49 Aligned_cols=128 Identities=19% Similarity=0.183 Sum_probs=100.7
Q ss_pred eEEEEecceeeccCCcceEEEEECCCCCcHHHHHHHHHHhC-CCceEEEecCcccc-----------cccccccCCCCCC
Q 006117 50 FIVIRACQLLAQKNHGIILVGVAGPSGAGKTVFTEKVLNFM-PSIAVITMDNYNDS-----------SRIIDGNFDDPRL 117 (660)
Q Consensus 50 ~~vL~~Isl~i~~ge~~~IIGI~GpSGSGKSTLak~L~~lL-p~~g~I~lDg~~~~-----------~~~i~~vfq~p~l 117 (660)
..++++++|.+++|+ ++||+|+||||||||+++|++.+ |..|.|.++|.... .+.+++++|++.+
T Consensus 18 ~~~l~~isl~i~~G~---~~~i~G~nGsGKSTLl~~i~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~~~~i~~v~q~~~~ 94 (221)
T TIGR02211 18 TRVLKGVSLSIGKGE---IVAIVGSSGSGKSTLLHLLGGLDNPTSGEVLFNGQSLSKLSSNERAKLRNKKLGFIYQFHHL 94 (221)
T ss_pred eEeEeeeEEEEcCCc---EEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEEhhhcCHhHHHHHHHhcEEEEeccccc
Confidence 579999999999999 99999999999999999999998 78999999986431 1347899999988
Q ss_pred CchhhHHHHHHhhhc--C---c----c-------ccc-ccccccccccccceeeecCCccEEEEecceeecccccCCCCE
Q 006117 118 TDYDTLLENIRGLKE--G---K----A-------VQV-PIYDFKSSSRIGYRTLEVPSSRIVIIEGIYALSEKLRPLIDL 180 (660)
Q Consensus 118 ~d~~tl~e~L~~L~~--G---k----~-------I~~-PiyD~s~~~rs~~~~~~v~~a~VVIVEGilaL~deLr~llDl 180 (660)
++..++.+++..... . . . ... +..+...+..++++.+++..+..++.++.+++.||+...+|.
T Consensus 95 ~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~laral~~~p~illlDEPt~~LD~ 174 (221)
T TIGR02211 95 LPDFTALENVAMPLLIGKKSVKEAKERAYEMLEKVGLEHRINHRPSELSGGERQRVAIARALVNQPSLVLADEPTGNLDN 174 (221)
T ss_pred CCCCcHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCChhhhhCChhhCCHHHHHHHHHHHHHhCCCCEEEEeCCCCcCCH
Confidence 888889988854210 0 0 0 001 112333445666778888888999999999999999999997
No 92
>TIGR03522 GldA_ABC_ATP gliding motility-associated ABC transporter ATP-binding subunit GldA. Members of this protein family are exclusive to the Bacteroidetes phylum (previously Cytophaga-Flavobacteria-Bacteroides). GldA is an ABC transporter ATP-binding protein (pfam00005) linked to a type of rapid surface gliding motility found in certain Bacteroidetes, such as Flavobacterium johnsoniae and Cytophaga hutchinsonii. Knockouts of GldA abolish the gliding phenotype. Gliding motility appears closely linked to chitin utilization in the model species Flavobacterium johnsoniae. Bacteroidetes with members of this protein family appear to have all of the genes associated with gliding motility.
Probab=99.43 E-value=2e-13 Score=144.22 Aligned_cols=138 Identities=18% Similarity=0.139 Sum_probs=108.5
Q ss_pred cceeeeecCceEEEEecceeeccCCcceEEEEECCCCCcHHHHHHHHHHhC-CCceEEEecCcccc------cccccccC
Q 006117 40 EDTLSFEKGFFIVIRACQLLAQKNHGIILVGVAGPSGAGKTVFTEKVLNFM-PSIAVITMDNYNDS------SRIIDGNF 112 (660)
Q Consensus 40 ~~~ls~~~g~~~vL~~Isl~i~~ge~~~IIGI~GpSGSGKSTLak~L~~lL-p~~g~I~lDg~~~~------~~~i~~vf 112 (660)
.+++++.++...++++++|.+++|+ ++||+||||||||||+++|++++ |+.|.|.++|.... .+.+++++
T Consensus 5 ~~~l~~~~~~~~~l~~is~~i~~Ge---i~~l~G~NGaGKTTLl~~l~Gl~~~~~G~i~i~g~~~~~~~~~~~~~ig~~~ 81 (301)
T TIGR03522 5 VSSLTKLYGTQNALDEVSFEAQKGR---IVGFLGPNGAGKSTTMKIITGYLPPDSGSVQVCGEDVLQNPKEVQRNIGYLP 81 (301)
T ss_pred EEEEEEEECCEEEEEEeEEEEeCCe---EEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEEcccChHHHHhceEEec
Confidence 4555666677789999999999999 99999999999999999999998 89999999997532 13578999
Q ss_pred CCCCCCchhhHHHHHHhhhc--Cc-------c-------ccc-ccccccccccccceeeecCCccEEEEecceeeccccc
Q 006117 113 DDPRLTDYDTLLENIRGLKE--GK-------A-------VQV-PIYDFKSSSRIGYRTLEVPSSRIVIIEGIYALSEKLR 175 (660)
Q Consensus 113 q~p~l~d~~tl~e~L~~L~~--Gk-------~-------I~~-PiyD~s~~~rs~~~~~~v~~a~VVIVEGilaL~deLr 175 (660)
|++.+++..++.+++..... +. . +.. +..+......++++.+++..+..++-++.+++.||+.
T Consensus 82 q~~~l~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~LS~G~~qrv~la~al~~~p~lliLDEPt 161 (301)
T TIGR03522 82 EHNPLYLDMYVREYLQFIAGIYGMKGQLLKQRVEEMIELVGLRPEQHKKIGQLSKGYRQRVGLAQALIHDPKVLILDEPT 161 (301)
T ss_pred CCCCCCCCCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHHCCCchHhcCchhhCCHHHHHHHHHHHHHhcCCCEEEEcCCc
Confidence 99999988899999864321 10 0 011 1123333445667777888888999999999999999
Q ss_pred CCCCE
Q 006117 176 PLIDL 180 (660)
Q Consensus 176 ~llDl 180 (660)
..+|.
T Consensus 162 ~gLD~ 166 (301)
T TIGR03522 162 TGLDP 166 (301)
T ss_pred ccCCH
Confidence 99997
No 93
>PRK11614 livF leucine/isoleucine/valine transporter ATP-binding subunit; Provisional
Probab=99.42 E-value=2.1e-13 Score=138.40 Aligned_cols=157 Identities=14% Similarity=0.117 Sum_probs=112.9
Q ss_pred cceeeeecCceEEEEecceeeccCCcceEEEEECCCCCcHHHHHHHHHHhC-CCceEEEecCcccc--------cccccc
Q 006117 40 EDTLSFEKGFFIVIRACQLLAQKNHGIILVGVAGPSGAGKTVFTEKVLNFM-PSIAVITMDNYNDS--------SRIIDG 110 (660)
Q Consensus 40 ~~~ls~~~g~~~vL~~Isl~i~~ge~~~IIGI~GpSGSGKSTLak~L~~lL-p~~g~I~lDg~~~~--------~~~i~~ 110 (660)
.+++++.++...++++++|.+++|+ ++||+|+||||||||+++|++.+ |..|.|.++|.... .+.+++
T Consensus 8 ~~~l~~~~~~~~~l~~vs~~i~~Ge---~~~i~G~nGsGKSTLl~~l~G~~~p~~G~i~~~g~~~~~~~~~~~~~~~i~~ 84 (237)
T PRK11614 8 FDKVSAHYGKIQALHEVSLHINQGE---IVTLIGANGAGKTTLLGTLCGDPRATSGRIVFDGKDITDWQTAKIMREAVAI 84 (237)
T ss_pred EEeEEEeeCCceeeeeeEEEEcCCc---EEEEECCCCCCHHHHHHHHcCCCCCCCceEEECCEecCCCCHHHHHHhCEEE
Confidence 4556666666789999999999999 99999999999999999999998 78999999997432 134788
Q ss_pred cCCCCCCCchhhHHHHHHhhhc---Ccc----c----c-cc----cccccccccccceeeecCCccEEEEecceeecccc
Q 006117 111 NFDDPRLTDYDTLLENIRGLKE---GKA----V----Q-VP----IYDFKSSSRIGYRTLEVPSSRIVIIEGIYALSEKL 174 (660)
Q Consensus 111 vfq~p~l~d~~tl~e~L~~L~~---Gk~----I----~-~P----iyD~s~~~rs~~~~~~v~~a~VVIVEGilaL~deL 174 (660)
++|++.+++..++.+++..... ... + . .+ ..+...+..++++.+++..+..++.++.+++.||+
T Consensus 85 ~~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~l~~~~~l~~~~~~~~~~LS~G~~qrl~la~al~~~p~illlDEP 164 (237)
T PRK11614 85 VPEGRRVFSRMTVEENLAMGGFFAERDQFQERIKWVYELFPRLHERRIQRAGTMSGGEQQMLAIGRALMSQPRLLLLDEP 164 (237)
T ss_pred eccCcccCCCCcHHHHHHHhhhccChhHHHHHHHHHHHHHHHHHHHHhCchhhCCHHHHHHHHHHHHHHhCCCEEEEcCc
Confidence 9999988887888888754210 000 0 0 00 11222334556677778888889999999999999
Q ss_pred cCCCCEEEEEEcChhHHHHHHHHHHHHHhCCC
Q 006117 175 RPLIDLRVSVTGGVHFDLVKRVFRDIQRVGQE 206 (660)
Q Consensus 175 r~llDlkIfVdad~dirLiRRI~RDv~eRGrs 206 (660)
...+|. ........+.++..+.|.+
T Consensus 165 t~~LD~-------~~~~~l~~~l~~~~~~~~t 189 (237)
T PRK11614 165 SLGLAP-------IIIQQIFDTIEQLREQGMT 189 (237)
T ss_pred cccCCH-------HHHHHHHHHHHHHHHCCCE
Confidence 999997 2333444444444444444
No 94
>TIGR01186 proV glycine betaine/L-proline transport ATP binding subunit. This model describes the glycine betaine/L-proline ATP binding subunit in bacteria and its equivalents in archaea. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporter is the obligatory coupling of ATP hydrolysis to substrate translocation. The minimal configuration of bacterial ABC transport system: an ATPase or ATP binding subunit; An integral membrane protein; a hydrophilic polypetpide, which likely functions as substrate binding protein. Functionally, this transport system is involved in osmoregulation. Under conditions of stress, the organism recruits these transport system to accumulate glycine betaine and other solutes which offer osmo-protection. It has been demonstrated that glycine betaine uptake is accompanied by symport with sodium ions. The locus has been named variously as proU or opuA. A gene library from L.lact
Probab=99.42 E-value=1.3e-13 Score=149.76 Aligned_cols=131 Identities=21% Similarity=0.136 Sum_probs=106.1
Q ss_pred cCceEEEEecceeeccCCcceEEEEECCCCCcHHHHHHHHHHhC-CCceEEEecCcccc-----------cccccccCCC
Q 006117 47 KGFFIVIRACQLLAQKNHGIILVGVAGPSGAGKTVFTEKVLNFM-PSIAVITMDNYNDS-----------SRIIDGNFDD 114 (660)
Q Consensus 47 ~g~~~vL~~Isl~i~~ge~~~IIGI~GpSGSGKSTLak~L~~lL-p~~g~I~lDg~~~~-----------~~~i~~vfq~ 114 (660)
++...+++++||.+++|+ +++|+|+||||||||+++|++++ |..|.|.++|.+.. .+.++++||+
T Consensus 3 ~~~~~~l~~vs~~i~~Ge---i~~l~G~sGsGKSTLLr~L~Gl~~p~~G~I~i~G~~i~~~~~~~~~~~rr~~i~~v~Q~ 79 (363)
T TIGR01186 3 TGGKKGVNDADLAIAKGE---IFVIMGLSGSGKSTTVRMLNRLIEPTAGQIFIDGENIMKQSPVELREVRRKKIGMVFQQ 79 (363)
T ss_pred cCCceeEEeeEEEEcCCC---EEEEECCCCChHHHHHHHHhCCCCCCceEEEECCEECCcCCHHHHHHHHhCcEEEEECC
Confidence 356679999999999999 99999999999999999999999 89999999997532 2468999999
Q ss_pred CCCCchhhHHHHHHhhhc--Cc--------------ccccc-cccccccccccceeeecCCccEEEEecceeecccccCC
Q 006117 115 PRLTDYDTLLENIRGLKE--GK--------------AVQVP-IYDFKSSSRIGYRTLEVPSSRIVIIEGIYALSEKLRPL 177 (660)
Q Consensus 115 p~l~d~~tl~e~L~~L~~--Gk--------------~I~~P-iyD~s~~~rs~~~~~~v~~a~VVIVEGilaL~deLr~l 177 (660)
+.+|+..++.+|+..... +. .+... ..+...+..++++.+++..++.++-++.+++.||++..
T Consensus 80 ~~l~~~~TV~eNi~~~~~~~~~~~~~~~~~~~~~l~~vgL~~~~~~~p~~LSGGq~QRV~lARAL~~~p~iLLlDEP~sa 159 (363)
T TIGR01186 80 FALFPHMTILQNTSLGPELLGWPEQERKEKALELLKLVGLEEYEHRYPDELSGGMQQRVGLARALAAEPDILLMDEAFSA 159 (363)
T ss_pred CcCCCCCCHHHHHHHHHHHcCCCHHHHHHHHHHHHHhcCCchhhhCChhhCCHHHHHHHHHHHHHhcCCCEEEEeCCccc
Confidence 999999999999864221 10 01111 23344455677888889999999999999999999999
Q ss_pred CCE
Q 006117 178 IDL 180 (660)
Q Consensus 178 lDl 180 (660)
+|.
T Consensus 160 LD~ 162 (363)
T TIGR01186 160 LDP 162 (363)
T ss_pred CCH
Confidence 997
No 95
>cd03256 ABC_PhnC_transporter ABC-type phosphate/phosphonate transport system. Phosphonates are a class of organophosphorus compounds characterized by a chemically stable carbon-to-phosphorus (C-P) bond. Phosphonates are widespread among naturally occurring compounds in all kingdoms of wildlife, but only procaryotic microorganisms are able to cleave this bond. Certain bacteria such as E. coli can use alkylphosphonates as a phosphorus source. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.42 E-value=2.7e-13 Score=137.44 Aligned_cols=156 Identities=21% Similarity=0.244 Sum_probs=112.5
Q ss_pred ceeeeecCc-eEEEEecceeeccCCcceEEEEECCCCCcHHHHHHHHHHhC-CCceEEEecCcccc----------cccc
Q 006117 41 DTLSFEKGF-FIVIRACQLLAQKNHGIILVGVAGPSGAGKTVFTEKVLNFM-PSIAVITMDNYNDS----------SRII 108 (660)
Q Consensus 41 ~~ls~~~g~-~~vL~~Isl~i~~ge~~~IIGI~GpSGSGKSTLak~L~~lL-p~~g~I~lDg~~~~----------~~~i 108 (660)
+++++.++. ..++++++|.+++|+ ++||+|+||||||||+++|++++ |..|.|.++|.... .+.+
T Consensus 4 ~~l~~~~~~~~~~l~~vs~~i~~Ge---~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~~~~~~i 80 (241)
T cd03256 4 ENLSKTYPNGKKALKDVSLSINPGE---FVALIGPSGAGKSTLLRCLNGLVEPTSGSVLIDGTDINKLKGKALRQLRRQI 80 (241)
T ss_pred eeEEEecCCccEEEecceEEEcCCC---EEEEECCCCCCHHHHHHHHhCCcCCCCceEEECCEeccccCHhHHHHHHhcc
Confidence 344555554 679999999999999 99999999999999999999998 78999999986432 1347
Q ss_pred cccCCCCCCCchhhHHHHHHhhhc----------C---c-----------cccc-ccccccccccccceeeecCCccEEE
Q 006117 109 DGNFDDPRLTDYDTLLENIRGLKE----------G---K-----------AVQV-PIYDFKSSSRIGYRTLEVPSSRIVI 163 (660)
Q Consensus 109 ~~vfq~p~l~d~~tl~e~L~~L~~----------G---k-----------~I~~-PiyD~s~~~rs~~~~~~v~~a~VVI 163 (660)
++++|++.+++..++.+++..... + . .... +..+...+..++++.+++..+..++
T Consensus 81 ~~~~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~la~al~ 160 (241)
T cd03256 81 GMIFQQFNLIERLSVLENVLSGRLGRRSTWRSLFGLFPKEEKQRALAALERVGLLDKAYQRADQLSGGQQQRVAIARALM 160 (241)
T ss_pred EEEcccCcccccCcHHHHHHhhhcccchhhhhhcccCcHHHHHHHHHHHHHcCChhhhCCCcccCCHHHHHHHHHHHHHh
Confidence 899999988888889888753110 0 0 0111 1122333445667778888888999
Q ss_pred EecceeecccccCCCCEEEEEEcChhHHHHHHHHHHHHH-hCCC
Q 006117 164 IEGIYALSEKLRPLIDLRVSVTGGVHFDLVKRVFRDIQR-VGQE 206 (660)
Q Consensus 164 VEGilaL~deLr~llDlkIfVdad~dirLiRRI~RDv~e-RGrs 206 (660)
.++.+++.||+...+|. .....+..+.++..+ .|.+
T Consensus 161 ~~p~llllDEPt~~LD~-------~~~~~l~~~l~~~~~~~~~t 197 (241)
T cd03256 161 QQPKLILADEPVASLDP-------ASSRQVMDLLKRINREEGIT 197 (241)
T ss_pred cCCCEEEEeCccccCCH-------HHHHHHHHHHHHHHHhcCCE
Confidence 99999999999999997 333444444454433 3544
No 96
>cd03246 ABCC_Protease_Secretion This family represents the ABC component of the protease secretion system PrtD, a 60-kDa integral membrane protein sharing 37% identity with HlyB, the ABC component of the alpha-hemolysin secretion pathway, in the C-terminal domain. They export degradative enzymes by using a type I protein secretion system and lack an N-terminal signal peptide, but contain a C-terminal secretion signal. The Type I secretion apparatus is made up of three components, an ABC transporter, a membrane fusion protein (MFP), and an outer membrane protein (OMP). For the HlyA transporter complex, HlyB (ABC transporter) and HlyD (MFP) reside in the inner membrane of E. coli. The OMP component is TolC, which is thought to interact with the MFP to form a continuous channel across the periplasm from the cytoplasm to the exterior. HlyB belongs to the family of ABC transporters, which are ubiquitous, ATP-dependent transmembrane pumps or channels. The spectrum of transport substra
Probab=99.42 E-value=2.3e-13 Score=132.16 Aligned_cols=126 Identities=17% Similarity=0.246 Sum_probs=98.5
Q ss_pred eEEEEecceeeccCCcceEEEEECCCCCcHHHHHHHHHHhC-CCceEEEecCcccc-------cccccccCCCCCCCchh
Q 006117 50 FIVIRACQLLAQKNHGIILVGVAGPSGAGKTVFTEKVLNFM-PSIAVITMDNYNDS-------SRIIDGNFDDPRLTDYD 121 (660)
Q Consensus 50 ~~vL~~Isl~i~~ge~~~IIGI~GpSGSGKSTLak~L~~lL-p~~g~I~lDg~~~~-------~~~i~~vfq~p~l~d~~ 121 (660)
..++++++|.+++|+ +++|+|+||||||||+++|++++ |..|.|.++|.... .+.+++++|++.+++ .
T Consensus 15 ~~~l~~~~~~i~~Ge---~~~i~G~nGsGKStLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~i~~~~q~~~~~~-~ 90 (173)
T cd03246 15 PPVLRNVSFSIEPGE---SLAIIGPSGSGKSTLARLILGLLRPTSGRVRLDGADISQWDPNELGDHVGYLPQDDELFS-G 90 (173)
T ss_pred CcceeeeEEEECCCC---EEEEECCCCCCHHHHHHHHHhccCCCCCeEEECCEEcccCCHHHHHhheEEECCCCcccc-C
Confidence 468999999999999 99999999999999999999998 78999999986432 235788999998877 4
Q ss_pred hHHHHHHhhhcCcccccccccccccccccceeeecCCccEEEEecceeecccccCCCCEEEEEEcChhHHHHHHHHHHHH
Q 006117 122 TLLENIRGLKEGKAVQVPIYDFKSSSRIGYRTLEVPSSRIVIIEGIYALSEKLRPLIDLRVSVTGGVHFDLVKRVFRDIQ 201 (660)
Q Consensus 122 tl~e~L~~L~~Gk~I~~PiyD~s~~~rs~~~~~~v~~a~VVIVEGilaL~deLr~llDlkIfVdad~dirLiRRI~RDv~ 201 (660)
++.+++ .++++.+++..++.++.++.+++.||+...+|. .....+..+.++..
T Consensus 91 tv~~~l--------------------LS~G~~qrv~la~al~~~p~~lllDEPt~~LD~-------~~~~~l~~~l~~~~ 143 (173)
T cd03246 91 SIAENI--------------------LSGGQRQRLGLARALYGNPRILVLDEPNSHLDV-------EGERALNQAIAALK 143 (173)
T ss_pred cHHHHC--------------------cCHHHHHHHHHHHHHhcCCCEEEEECCccccCH-------HHHHHHHHHHHHHH
Confidence 888876 344566667777888888899999999999997 33344444445444
Q ss_pred HhCCC
Q 006117 202 RVGQE 206 (660)
Q Consensus 202 eRGrs 206 (660)
+.|.+
T Consensus 144 ~~~~t 148 (173)
T cd03246 144 AAGAT 148 (173)
T ss_pred hCCCE
Confidence 33433
No 97
>PRK15079 oligopeptide ABC transporter ATP-binding protein OppF; Provisional
Probab=99.42 E-value=2.5e-13 Score=145.73 Aligned_cols=129 Identities=19% Similarity=0.231 Sum_probs=103.9
Q ss_pred ceEEEEecceeeccCCcceEEEEECCCCCcHHHHHHHHHHhC-CCceEEEecCcccc----------cccccccCCCC--
Q 006117 49 FFIVIRACQLLAQKNHGIILVGVAGPSGAGKTVFTEKVLNFM-PSIAVITMDNYNDS----------SRIIDGNFDDP-- 115 (660)
Q Consensus 49 ~~~vL~~Isl~i~~ge~~~IIGI~GpSGSGKSTLak~L~~lL-p~~g~I~lDg~~~~----------~~~i~~vfq~p-- 115 (660)
...+++++||.+.+|+ ++||+|+||||||||+++|++++ |..|.|.++|.... .+.++++||+|
T Consensus 33 ~~~~l~~vsl~i~~Ge---~~~lvG~sGsGKSTLlk~i~Gl~~p~~G~I~~~G~~i~~~~~~~~~~~r~~i~~v~Q~~~~ 109 (331)
T PRK15079 33 TLKAVDGVTLRLYEGE---TLGVVGESGCGKSTFARAIIGLVKATDGEVAWLGKDLLGMKDDEWRAVRSDIQMIFQDPLA 109 (331)
T ss_pred ceEEEeeEEEEEcCCC---EEEEECCCCCCHHHHHHHHHCCCCCCCcEEEECCEECCcCCHHHHHHHhCceEEEecCchh
Confidence 3679999999999999 99999999999999999999998 78999999997532 13578999998
Q ss_pred CCCchhhHHHHHHhhhc----C--------------ccccc-c-cccccccccccceeeecCCccEEEEecceeeccccc
Q 006117 116 RLTDYDTLLENIRGLKE----G--------------KAVQV-P-IYDFKSSSRIGYRTLEVPSSRIVIIEGIYALSEKLR 175 (660)
Q Consensus 116 ~l~d~~tl~e~L~~L~~----G--------------k~I~~-P-iyD~s~~~rs~~~~~~v~~a~VVIVEGilaL~deLr 175 (660)
.+++..++.+++..... + +.+.. + ..+...++.++++.+++..+..++.++.+++.||+.
T Consensus 110 ~l~p~~tv~~~i~~~l~~~~~~~~~~~~~~~~~~~l~~vgl~~~~~~~~p~~LSgG~~QRv~iArAL~~~P~llilDEPt 189 (331)
T PRK15079 110 SLNPRMTIGEIIAEPLRTYHPKLSRQEVKDRVKAMMLKVGLLPNLINRYPHEFSGGQCQRIGIARALILEPKLIICDEPV 189 (331)
T ss_pred hcCCCCCHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHcCCChHHhcCCcccCCHHHHHHHHHHHHHhcCCCEEEEeCCC
Confidence 57777888888753110 0 01222 2 245556677888888899999999999999999999
Q ss_pred CCCCE
Q 006117 176 PLIDL 180 (660)
Q Consensus 176 ~llDl 180 (660)
..+|.
T Consensus 190 s~LD~ 194 (331)
T PRK15079 190 SALDV 194 (331)
T ss_pred ccCCH
Confidence 99997
No 98
>PRK14247 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.42 E-value=3.1e-13 Score=138.16 Aligned_cols=137 Identities=18% Similarity=0.183 Sum_probs=104.7
Q ss_pred ceeeeecCceEEEEecceeeccCCcceEEEEECCCCCcHHHHHHHHHHhC-C-----CceEEEecCcccc-------ccc
Q 006117 41 DTLSFEKGFFIVIRACQLLAQKNHGIILVGVAGPSGAGKTVFTEKVLNFM-P-----SIAVITMDNYNDS-------SRI 107 (660)
Q Consensus 41 ~~ls~~~g~~~vL~~Isl~i~~ge~~~IIGI~GpSGSGKSTLak~L~~lL-p-----~~g~I~lDg~~~~-------~~~ 107 (660)
+++++.++...++++++|.+++|+ ++||+|+||||||||+++|++++ | ..|.|.++|.... ...
T Consensus 7 ~~l~~~~~~~~~l~~is~~i~~Ge---~~~i~G~nGsGKSTLl~~i~G~~~~~~~~~~~G~i~~~g~~i~~~~~~~~~~~ 83 (250)
T PRK14247 7 RDLKVSFGQVEVLDGVNLEIPDNT---ITALMGPSGSGKSTLLRVFNRLIELYPEARVSGEVYLDGQDIFKMDVIELRRR 83 (250)
T ss_pred EeeEEEECCeeeeecceeEEcCCC---EEEEECCCCCCHHHHHHHHhccCCCCCCCCCceEEEECCEECCcCCHHHHhcc
Confidence 445555566679999999999999 99999999999999999999997 3 5899999997532 135
Q ss_pred ccccCCCCCCCchhhHHHHHHhhhc--C-----c----c-------ccc-----ccccccccccccceeeecCCccEEEE
Q 006117 108 IDGNFDDPRLTDYDTLLENIRGLKE--G-----K----A-------VQV-----PIYDFKSSSRIGYRTLEVPSSRIVII 164 (660)
Q Consensus 108 i~~vfq~p~l~d~~tl~e~L~~L~~--G-----k----~-------I~~-----PiyD~s~~~rs~~~~~~v~~a~VVIV 164 (660)
++++||++.+++..++.+++..... + . . +.. ...+......++++.+++..++.++.
T Consensus 84 i~~v~q~~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~LSgG~~qrv~laral~~ 163 (250)
T PRK14247 84 VQMVFQIPNPIPNLSIFENVALGLKLNRLVKSKKELQERVRWALEKAQLWDEVKDRLDAPAGKLSGGQQQRLCIARALAF 163 (250)
T ss_pred EEEEeccCccCCCCcHHHHHHHHHHhccccCCHHHHHHHHHHHHHHcCCCcchhhhhcCCcccCCHHHHHHHHHHHHHhc
Confidence 7899999988888899999863211 0 0 0 001 11233344556677778888889999
Q ss_pred ecceeecccccCCCCE
Q 006117 165 EGIYALSEKLRPLIDL 180 (660)
Q Consensus 165 EGilaL~deLr~llDl 180 (660)
++.+++.||+...+|.
T Consensus 164 ~p~lllLDEP~~~LD~ 179 (250)
T PRK14247 164 QPEVLLADEPTANLDP 179 (250)
T ss_pred CCCEEEEcCCCccCCH
Confidence 9999999999999997
No 99
>COG4152 ABC-type uncharacterized transport system, ATPase component [General function prediction only]
Probab=99.42 E-value=1.5e-13 Score=140.01 Aligned_cols=165 Identities=18% Similarity=0.144 Sum_probs=124.3
Q ss_pred cceeeeecCceEEEEecceeeccCCcceEEEEECCCCCcHHHHHHHHHHhC-CCceEEEecCccccc---ccccccCCCC
Q 006117 40 EDTLSFEKGFFIVIRACQLLAQKNHGIILVGVAGPSGAGKTVFTEKVLNFM-PSIAVITMDNYNDSS---RIIDGNFDDP 115 (660)
Q Consensus 40 ~~~ls~~~g~~~vL~~Isl~i~~ge~~~IIGI~GpSGSGKSTLak~L~~lL-p~~g~I~lDg~~~~~---~~i~~vfq~p 115 (660)
.++++..+|.+.|++++||.+++|+ +.|++|+|||||||+.++|.+++ |+.|.|.++|..... ..++|.+.+.
T Consensus 5 ie~vtK~Fg~k~av~~isf~v~~G~---i~GllG~NGAGKTTtfRmILglle~~~G~I~~~g~~~~~~~~~rIGyLPEER 81 (300)
T COG4152 5 IEGVTKSFGDKKAVDNISFEVPPGE---IFGLLGPNGAGKTTTFRMILGLLEPTEGEITWNGGPLSQEIKNRIGYLPEER 81 (300)
T ss_pred EecchhccCceeeecceeeeecCCe---EEEeecCCCCCccchHHHHhccCCccCceEEEcCcchhhhhhhhcccChhhh
Confidence 3455556699999999999999999 99999999999999999999999 899999999976543 4689999999
Q ss_pred CCCchhhHHHHHHhhhcCcc----------------ccccccccc-ccccccceeeecCCccEEEEecceeecccccCCC
Q 006117 116 RLTDYDTLLENIRGLKEGKA----------------VQVPIYDFK-SSSRIGYRTLEVPSSRIVIIEGIYALSEKLRPLI 178 (660)
Q Consensus 116 ~l~d~~tl~e~L~~L~~Gk~----------------I~~PiyD~s-~~~rs~~~~~~v~~a~VVIVEGilaL~deLr~ll 178 (660)
.+++.+++.+.|..+..-+. ..+.-+... ..+.+.+..+.+.--..++-|+-+++.||++..+
T Consensus 82 GLy~k~tv~dql~yla~LkGm~~~e~~~~~~~wLer~~i~~~~~~kIk~LSKGnqQKIQfisaviHePeLlILDEPFSGL 161 (300)
T COG4152 82 GLYPKMTVEDQLKYLAELKGMPKAEIQKKLQAWLERLEIVGKKTKKIKELSKGNQQKIQFISAVIHEPELLILDEPFSGL 161 (300)
T ss_pred ccCccCcHHHHHHHHHHhcCCcHHHHHHHHHHHHHhccccccccchHHHhhhhhhHHHHHHHHHhcCCCEEEecCCccCC
Confidence 99999999999876553221 111111111 1122333333343334577888888899999999
Q ss_pred CEEEEEEcChhHHHHHHHHHHHHHhCCCHHHHHHHH
Q 006117 179 DLRVSVTGGVHFDLVKRVFRDIQRVGQEPEEIIHQI 214 (660)
Q Consensus 179 DlkIfVdad~dirLiRRI~RDv~eRGrs~E~Vl~qy 214 (660)
|. ..+.+.+....+.+++|.+.--..|++
T Consensus 162 DP-------VN~elLk~~I~~lk~~GatIifSsH~M 190 (300)
T COG4152 162 DP-------VNVELLKDAIFELKEEGATIIFSSHRM 190 (300)
T ss_pred Ch-------hhHHHHHHHHHHHHhcCCEEEEecchH
Confidence 97 678899999999999998864333443
No 100
>cd03226 ABC_cobalt_CbiO_domain2 Domain II of the ABC component of a cobalt transport family found in bacteria, archaea, and eukaryota. The transition metal cobalt is an essential component of many enzymes and must be transported into cells in appropriate amounts when needed. The CbiMNQO family ABC transport system is involved in cobalt transport in association with the cobalamin (vitamin B12) biosynthetic pathways. Most cobalt (Cbi) transport systems possess a separate CbiN component, the cobalt-binding periplasmic protein, and they are encoded by the conserved gene cluster cbiMNQO. Both the CbiM and CbiQ proteins are integral cytoplasmic membrane proteins, and the CbiO protein has the linker peptide and the Walker A and B motifs commonly found in the ATPase components of the ABC-type transport systems.
Probab=99.42 E-value=2.2e-13 Score=135.32 Aligned_cols=155 Identities=14% Similarity=0.157 Sum_probs=110.2
Q ss_pred eeeeecCc-eEEEEecceeeccCCcceEEEEECCCCCcHHHHHHHHHHhC-CCceEEEecCcccc----cccccccCCCC
Q 006117 42 TLSFEKGF-FIVIRACQLLAQKNHGIILVGVAGPSGAGKTVFTEKVLNFM-PSIAVITMDNYNDS----SRIIDGNFDDP 115 (660)
Q Consensus 42 ~ls~~~g~-~~vL~~Isl~i~~ge~~~IIGI~GpSGSGKSTLak~L~~lL-p~~g~I~lDg~~~~----~~~i~~vfq~p 115 (660)
++++.++. ..++++++|.+++|+ +++|+||||||||||+++|++++ |+.|.|.++|.... .+.++++||++
T Consensus 4 ~l~~~~~~~~~~l~~v~~~i~~Ge---~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~i~~~~q~~ 80 (205)
T cd03226 4 NISFSYKKGTEILDDLSLDLYAGE---IIALTGKNGAGKTTLAKILAGLIKESSGSILLNGKPIKAKERRKSIGYVMQDV 80 (205)
T ss_pred cEEEEeCCcCceeeeeeEEEcCCC---EEEEECCCCCCHHHHHHHHhcCCCCCceEEEECCEEhhhHHhhcceEEEecCh
Confidence 34444444 679999999999999 99999999999999999999998 79999999987532 23578999987
Q ss_pred C-CCchhhHHHHHHhhhc--Cc---c-------ccc-ccccccccccccceeeecCCccEEEEecceeecccccCCCCEE
Q 006117 116 R-LTDYDTLLENIRGLKE--GK---A-------VQV-PIYDFKSSSRIGYRTLEVPSSRIVIIEGIYALSEKLRPLIDLR 181 (660)
Q Consensus 116 ~-l~d~~tl~e~L~~L~~--Gk---~-------I~~-PiyD~s~~~rs~~~~~~v~~a~VVIVEGilaL~deLr~llDlk 181 (660)
. .+...++.+++..... +. . +.. +..+......++++.+++..++.++.++.+++.||+...+|.
T Consensus 81 ~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~laral~~~p~llllDEPt~~LD~- 159 (205)
T cd03226 81 DYQLFTDSVREELLLGLKELDAGNEQAETVLKDLDLYALKERHPLSLSGGQKQRLAIAAALLSGKDLLIFDEPTSGLDY- 159 (205)
T ss_pred hhhhhhccHHHHHhhhhhhcCccHHHHHHHHHHcCCchhcCCCchhCCHHHHHHHHHHHHHHhCCCEEEEeCCCccCCH-
Confidence 4 2344688888854211 10 0 111 112333344566777888888899999999999999999997
Q ss_pred EEEEcChhHHHHHHHHHHHHHhCCC
Q 006117 182 VSVTGGVHFDLVKRVFRDIQRVGQE 206 (660)
Q Consensus 182 IfVdad~dirLiRRI~RDv~eRGrs 206 (660)
.....+..+.++....|.+
T Consensus 160 ------~~~~~l~~~l~~~~~~~~t 178 (205)
T cd03226 160 ------KNMERVGELIRELAAQGKA 178 (205)
T ss_pred ------HHHHHHHHHHHHHHHCCCE
Confidence 3334444555554434443
No 101
>cd03225 ABC_cobalt_CbiO_domain1 Domain I of the ABC component of a cobalt transport family found in bacteria, archaea, and eukaryota. The transition metal cobalt is an essential component of many enzymes and must be transported into cells in appropriate amounts when needed. This ABC transport system of the CbiMNQO family is involved in cobalt transport in association with the cobalamin (vitamin B12) biosynthetic pathways. Most of cobalt (Cbi) transport systems possess a separate CbiN component, the cobalt-binding periplasmic protein, and they are encoded by the conserved gene cluster cbiMNQO. Both the CbiM and CbiQ proteins are integral cytoplasmic membrane proteins, and the CbiO protein has the linker peptide and the Walker A and B motifs commonly found in the ATPase components of the ABC-type transport systems.
Probab=99.41 E-value=2.5e-13 Score=135.15 Aligned_cols=136 Identities=19% Similarity=0.202 Sum_probs=101.2
Q ss_pred eeeeecCc--eEEEEecceeeccCCcceEEEEECCCCCcHHHHHHHHHHhC-CCceEEEecCcccc-------ccccccc
Q 006117 42 TLSFEKGF--FIVIRACQLLAQKNHGIILVGVAGPSGAGKTVFTEKVLNFM-PSIAVITMDNYNDS-------SRIIDGN 111 (660)
Q Consensus 42 ~ls~~~g~--~~vL~~Isl~i~~ge~~~IIGI~GpSGSGKSTLak~L~~lL-p~~g~I~lDg~~~~-------~~~i~~v 111 (660)
++++.++. ..++++++|.+++|+ ++||+|+||||||||+++|++.+ |..|.|.++|.... .+.++++
T Consensus 4 ~l~~~~~~~~~~il~~vs~~i~~G~---~~~l~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~i~~~ 80 (211)
T cd03225 4 NLSFSYPDGARPALDDISLTIKKGE---FVLIVGPNGSGKSTLLRLLNGLLGPTSGEVLVDGKDLTKLSLKELRRKVGLV 80 (211)
T ss_pred eEEEecCCCCeeeecceEEEEcCCc---EEEEECCCCCCHHHHHHHHhcCCCCCCceEEECCEEcccCCHHHHHhhceEE
Confidence 34455554 679999999999999 99999999999999999999998 78999999986432 1347889
Q ss_pred CCCCCC-CchhhHHHHHHhhhc--C---c-----------cccc-ccccccccccccceeeecCCccEEEEecceeeccc
Q 006117 112 FDDPRL-TDYDTLLENIRGLKE--G---K-----------AVQV-PIYDFKSSSRIGYRTLEVPSSRIVIIEGIYALSEK 173 (660)
Q Consensus 112 fq~p~l-~d~~tl~e~L~~L~~--G---k-----------~I~~-PiyD~s~~~rs~~~~~~v~~a~VVIVEGilaL~de 173 (660)
+|++.. ++..++.+++..... + . .... ...+...+..++++.+++..++.++.++.+++.||
T Consensus 81 ~q~~~~~~~~~t~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgG~~qrv~laral~~~p~llllDE 160 (211)
T cd03225 81 FQNPDDQFFGPTVEEEVAFGLENLGLPEEEIEERVEEALELVGLEGLRDRSPFTLSGGQKQRVAIAGVLAMDPDILLLDE 160 (211)
T ss_pred ecChhhhcCCCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCcHhhhcCCcccCCHHHHHHHHHHHHHhcCCCEEEEcC
Confidence 998753 455688888753210 0 0 0011 11223334456677788888889999999999999
Q ss_pred ccCCCCE
Q 006117 174 LRPLIDL 180 (660)
Q Consensus 174 Lr~llDl 180 (660)
+...+|.
T Consensus 161 Pt~~LD~ 167 (211)
T cd03225 161 PTAGLDP 167 (211)
T ss_pred CcccCCH
Confidence 9999997
No 102
>PRK10908 cell division protein FtsE; Provisional
Probab=99.41 E-value=2.9e-13 Score=135.99 Aligned_cols=137 Identities=19% Similarity=0.149 Sum_probs=103.6
Q ss_pred ceeeeec-CceEEEEecceeeccCCcceEEEEECCCCCcHHHHHHHHHHhC-CCceEEEecCcccc----------cccc
Q 006117 41 DTLSFEK-GFFIVIRACQLLAQKNHGIILVGVAGPSGAGKTVFTEKVLNFM-PSIAVITMDNYNDS----------SRII 108 (660)
Q Consensus 41 ~~ls~~~-g~~~vL~~Isl~i~~ge~~~IIGI~GpSGSGKSTLak~L~~lL-p~~g~I~lDg~~~~----------~~~i 108 (660)
+++++.+ +...++++++|.+++|+ ++||+|+||||||||+++|++++ |+.|.|.++|.... .+.+
T Consensus 5 ~~l~~~~~~~~~~l~~vsl~i~~Ge---~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~i~~~~~~~~~~~~~~i 81 (222)
T PRK10908 5 EHVSKAYLGGRQALQGVTFHMRPGE---MAFLTGHSGAGKSTLLKLICGIERPSAGKIWFSGHDITRLKNREVPFLRRQI 81 (222)
T ss_pred EeeEEEecCCCeEEeeeeEEEcCCC---EEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEEcccCChhHHHHHHhhe
Confidence 3444444 44579999999999999 99999999999999999999998 78999999986432 1347
Q ss_pred cccCCCCCCCchhhHHHHHHhhh--cCc---c-----------ccc-ccccccccccccceeeecCCccEEEEecceeec
Q 006117 109 DGNFDDPRLTDYDTLLENIRGLK--EGK---A-----------VQV-PIYDFKSSSRIGYRTLEVPSSRIVIIEGIYALS 171 (660)
Q Consensus 109 ~~vfq~p~l~d~~tl~e~L~~L~--~Gk---~-----------I~~-PiyD~s~~~rs~~~~~~v~~a~VVIVEGilaL~ 171 (660)
++++|++.+++..++.+++.... .+. . ... +..+...+..++++.+++..++.++.++.+++.
T Consensus 82 ~~~~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~laral~~~p~llll 161 (222)
T PRK10908 82 GMIFQDHHLLMDRTVYDNVAIPLIIAGASGDDIRRRVSAALDKVGLLDKAKNFPIQLSGGEQQRVGIARAVVNKPAVLLA 161 (222)
T ss_pred EEEecCccccccccHHHHHHhHHHhcCCCHHHHHHHHHHHHHHcCChhhhhCCchhCCHHHHHHHHHHHHHHcCCCEEEE
Confidence 89999998877788888885421 110 0 000 112233345566777788888889999999999
Q ss_pred ccccCCCCE
Q 006117 172 EKLRPLIDL 180 (660)
Q Consensus 172 deLr~llDl 180 (660)
||+...+|.
T Consensus 162 DEPt~~LD~ 170 (222)
T PRK10908 162 DEPTGNLDD 170 (222)
T ss_pred eCCCCcCCH
Confidence 999999997
No 103
>cd03301 ABC_MalK_N The N-terminal ATPase domain of the maltose transporter, MalK. ATP binding cassette (ABC) proteins function from bacteria to human, mediating the translocation of substances into and out of cells or organelles. ABC transporters contain two transmembrane-spanning domains (TMDs) or subunits and two nucleotide binding domains (NBDs) or subunits that couple transport to the hydrolysis of ATP. In the maltose transport system, the periplasmic maltose binding protein (MBP) stimulates the ATPase activity of the membrane-associated transporter, which consists of two transmembrane subunits, MalF and MalG, and two copies of the ATP binding subunit, MalK, and becomes tightly bound to the transporter in the catalytic transition state, ensuring that maltose is passed to the transporter as ATP is hydrolyzed.
Probab=99.41 E-value=2.7e-13 Score=135.04 Aligned_cols=137 Identities=20% Similarity=0.201 Sum_probs=104.5
Q ss_pred ceeeeecCceEEEEecceeeccCCcceEEEEECCCCCcHHHHHHHHHHhC-CCceEEEecCcccc-----cccccccCCC
Q 006117 41 DTLSFEKGFFIVIRACQLLAQKNHGIILVGVAGPSGAGKTVFTEKVLNFM-PSIAVITMDNYNDS-----SRIIDGNFDD 114 (660)
Q Consensus 41 ~~ls~~~g~~~vL~~Isl~i~~ge~~~IIGI~GpSGSGKSTLak~L~~lL-p~~g~I~lDg~~~~-----~~~i~~vfq~ 114 (660)
+++++.++...++++++|.+++|+ ++||+|+||||||||+++|++++ |..|.|.++|.... .+.+++++|+
T Consensus 4 ~~l~~~~~~~~~l~~is~~i~~Ge---~~~l~G~nGsGKSTLl~~l~G~~~~~~G~v~~~g~~~~~~~~~~~~i~~~~q~ 80 (213)
T cd03301 4 ENVTKRFGNVTALDDLNLDIADGE---FVVLLGPSGCGKTTTLRMIAGLEEPTSGRIYIGGRDVTDLPPKDRDIAMVFQN 80 (213)
T ss_pred EeeEEEECCeeeeeceEEEEcCCc---EEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEECCcCCcccceEEEEecC
Confidence 445555566679999999999999 99999999999999999999998 78999999986532 2357899999
Q ss_pred CCCCchhhHHHHHHhhhc--C---cc-----------ccc-ccccccccccccceeeecCCccEEEEecceeecccccCC
Q 006117 115 PRLTDYDTLLENIRGLKE--G---KA-----------VQV-PIYDFKSSSRIGYRTLEVPSSRIVIIEGIYALSEKLRPL 177 (660)
Q Consensus 115 p~l~d~~tl~e~L~~L~~--G---k~-----------I~~-PiyD~s~~~rs~~~~~~v~~a~VVIVEGilaL~deLr~l 177 (660)
+.+++..++.+++..... + .. ... ...+......++++.+++..++.++.++.+++.||+...
T Consensus 81 ~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qr~~laral~~~p~llllDEPt~~ 160 (213)
T cd03301 81 YALYPHMTVYDNIAFGLKLRKVPKDEIDERVREVAELLQIEHLLDRKPKQLSGGQRQRVALGRAIVREPKVFLMDEPLSN 160 (213)
T ss_pred hhhccCCCHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCHHHHhCChhhCCHHHHHHHHHHHHHhcCCCEEEEcCCccc
Confidence 988887888888754210 1 00 000 112223344566777788888889999999999999999
Q ss_pred CCE
Q 006117 178 IDL 180 (660)
Q Consensus 178 lDl 180 (660)
+|.
T Consensus 161 LD~ 163 (213)
T cd03301 161 LDA 163 (213)
T ss_pred CCH
Confidence 997
No 104
>PRK10619 histidine/lysine/arginine/ornithine transporter subunit; Provisional
Probab=99.41 E-value=3.3e-13 Score=138.81 Aligned_cols=157 Identities=19% Similarity=0.177 Sum_probs=113.9
Q ss_pred cceeeeecCceEEEEecceeeccCCcceEEEEECCCCCcHHHHHHHHHHhC-CCceEEEecCcccc--------------
Q 006117 40 EDTLSFEKGFFIVIRACQLLAQKNHGIILVGVAGPSGAGKTVFTEKVLNFM-PSIAVITMDNYNDS-------------- 104 (660)
Q Consensus 40 ~~~ls~~~g~~~vL~~Isl~i~~ge~~~IIGI~GpSGSGKSTLak~L~~lL-p~~g~I~lDg~~~~-------------- 104 (660)
.+++++.++...++++++|.+++|+ ++||+|+||||||||+++|++++ |..|.|.++|....
T Consensus 8 ~~~l~~~~~~~~~l~~is~~i~~Ge---~~~l~G~nGsGKSTLl~~i~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~~~~ 84 (257)
T PRK10619 8 VIDLHKRYGEHEVLKGVSLQANAGD---VISIIGSSGSGKSTFLRCINFLEKPSEGSIVVNGQTINLVRDKDGQLKVADK 84 (257)
T ss_pred EeeeEEEECCEEEEeeeEEEEcCCC---EEEEECCCCCCHHHHHHHHhCCCCCCCeEEEECCEEcccccccccccccccc
Confidence 3555555566789999999999999 99999999999999999999998 78999999986431
Q ss_pred ------cccccccCCCCCCCchhhHHHHHHhhh----cCc-------------ccccccc--cccccccccceeeecCCc
Q 006117 105 ------SRIIDGNFDDPRLTDYDTLLENIRGLK----EGK-------------AVQVPIY--DFKSSSRIGYRTLEVPSS 159 (660)
Q Consensus 105 ------~~~i~~vfq~p~l~d~~tl~e~L~~L~----~Gk-------------~I~~Piy--D~s~~~rs~~~~~~v~~a 159 (660)
.+.+++++|++.+++..++.+++.... ... ......+ +...+..++++.+++..+
T Consensus 85 ~~~~~~~~~i~~v~q~~~l~~~~sv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~~LS~G~~qrv~la 164 (257)
T PRK10619 85 NQLRLLRTRLTMVFQHFNLWSHMTVLENVMEAPIQVLGLSKQEARERAVKYLAKVGIDERAQGKYPVHLSGGQQQRVSIA 164 (257)
T ss_pred hHHHHHhhceEEEecCcccCCCCcHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCChhhhhCCcccCCHHHHHHHHHH
Confidence 134789999999988889999875311 100 0111111 223344556677788888
Q ss_pred cEEEEecceeecccccCCCCEEEEEEcChhHHHHHHHHHHHHHhCCC
Q 006117 160 RIVIIEGIYALSEKLRPLIDLRVSVTGGVHFDLVKRVFRDIQRVGQE 206 (660)
Q Consensus 160 ~VVIVEGilaL~deLr~llDlkIfVdad~dirLiRRI~RDv~eRGrs 206 (660)
+.++.++.+++.||+...+|. .....+.++.+.....|.+
T Consensus 165 ral~~~p~llllDEPt~~LD~-------~~~~~l~~~l~~l~~~g~t 204 (257)
T PRK10619 165 RALAMEPEVLLFDEPTSALDP-------ELVGEVLRIMQQLAEEGKT 204 (257)
T ss_pred HHHhcCCCEEEEeCCcccCCH-------HHHHHHHHHHHHHHhcCCE
Confidence 889999999999999999997 3344444444444434544
No 105
>TIGR01189 ccmA heme ABC exporter, ATP-binding protein CcmA. This model describes the cyt c biogenesis protein encoded by ccmA in bacteria. An exception is, an arabidopsis protein. Quite likely this is encoded by an organelle. Bacterial c-type cytocromes are located on the periplasmic side of the cytoplasmic membrane. Several gene products encoded in a locus designated as 'ccm' are implicated in the transport and assembly of the functional cytochrome C. This cluster includes genes: ccmA;B;C;D;E;F;G and H. The posttranslational pathway includes the transport of heme moiety, the secretion of the apoprotein and the covalent attachment of the heme with the apoprotein. The proteins ccmA and B represent an ABC transporter; ccmC and D participate in heme transfer to ccmE, which function as a periplasmic heme chaperone. The presence of ccmF, G and H is suggested to be obligatory for the final functional assembly of cytochrome c.
Probab=99.41 E-value=3.8e-13 Score=133.04 Aligned_cols=137 Identities=16% Similarity=0.177 Sum_probs=104.6
Q ss_pred ceeeeecCceEEEEecceeeccCCcceEEEEECCCCCcHHHHHHHHHHhC-CCceEEEecCcccc------cccccccCC
Q 006117 41 DTLSFEKGFFIVIRACQLLAQKNHGIILVGVAGPSGAGKTVFTEKVLNFM-PSIAVITMDNYNDS------SRIIDGNFD 113 (660)
Q Consensus 41 ~~ls~~~g~~~vL~~Isl~i~~ge~~~IIGI~GpSGSGKSTLak~L~~lL-p~~g~I~lDg~~~~------~~~i~~vfq 113 (660)
+++++.++...++++++|.+.+|+ ++||+|+||||||||+++|++.+ |..|.|.++|.... .+.+++++|
T Consensus 4 ~~l~~~~~~~~~l~~vsl~i~~Ge---~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~i~~~~q 80 (198)
T TIGR01189 4 RNLACSRGERMLFEGLSFTLNAGE---ALQVTGPNGIGKTTLLRILAGLLRPDSGEVRWNGTALAEQRDEPHRNILYLGH 80 (198)
T ss_pred EEEEEEECCEEEEeeeeEEEcCCc---EEEEECCCCCCHHHHHHHHhCCCCCCccEEEECCEEcccchHHhhhheEEecc
Confidence 445555666789999999999999 99999999999999999999998 78999999997432 134678888
Q ss_pred CCCCCchhhHHHHHHhhhc--C-cc---------ccc-ccccccccccccceeeecCCccEEEEecceeecccccCCCCE
Q 006117 114 DPRLTDYDTLLENIRGLKE--G-KA---------VQV-PIYDFKSSSRIGYRTLEVPSSRIVIIEGIYALSEKLRPLIDL 180 (660)
Q Consensus 114 ~p~l~d~~tl~e~L~~L~~--G-k~---------I~~-PiyD~s~~~rs~~~~~~v~~a~VVIVEGilaL~deLr~llDl 180 (660)
++.+++..++.+++..... + .. +.. +..+...+..++++..++..++.++.++.+++.||+...+|.
T Consensus 81 ~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~la~al~~~p~llllDEPt~~LD~ 160 (198)
T TIGR01189 81 LPGLKPELSALENLHFWAAIHGGAQRTIEDALAAVGLTGFEDLPAAQLSAGQQRRLALARLWLSRAPLWILDEPTTALDK 160 (198)
T ss_pred CcccccCCcHHHHHHHHHHHcCCcHHHHHHHHHHcCCHHHhcCChhhcCHHHHHHHHHHHHHhcCCCEEEEeCCCcCCCH
Confidence 8888777888888754321 1 00 001 112233344566677788888899999999999999999997
No 106
>PRK13539 cytochrome c biogenesis protein CcmA; Provisional
Probab=99.41 E-value=3.6e-13 Score=134.35 Aligned_cols=138 Identities=14% Similarity=0.189 Sum_probs=103.7
Q ss_pred cceeeeecCceEEEEecceeeccCCcceEEEEECCCCCcHHHHHHHHHHhC-CCceEEEecCcccc----cccccccCCC
Q 006117 40 EDTLSFEKGFFIVIRACQLLAQKNHGIILVGVAGPSGAGKTVFTEKVLNFM-PSIAVITMDNYNDS----SRIIDGNFDD 114 (660)
Q Consensus 40 ~~~ls~~~g~~~vL~~Isl~i~~ge~~~IIGI~GpSGSGKSTLak~L~~lL-p~~g~I~lDg~~~~----~~~i~~vfq~ 114 (660)
.+++++.++...++++++|.+++|+ ++||+|+||||||||+++|++.. |..|.|.++|.... ...++++++.
T Consensus 5 ~~~l~~~~~~~~~l~~is~~i~~Ge---~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~~~~ 81 (207)
T PRK13539 5 GEDLACVRGGRVLFSGLSFTLAAGE---ALVLTGPNGSGKTTLLRLIAGLLPPAAGTIKLDGGDIDDPDVAEACHYLGHR 81 (207)
T ss_pred EEeEEEEECCeEEEeceEEEEcCCC---EEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEeCcchhhHhhcEEecCC
Confidence 4555566666779999999999999 99999999999999999999998 78999999986432 2346788877
Q ss_pred CCCCchhhHHHHHHhhhc--Ccc----------ccc-ccccccccccccceeeecCCccEEEEecceeecccccCCCCE
Q 006117 115 PRLTDYDTLLENIRGLKE--GKA----------VQV-PIYDFKSSSRIGYRTLEVPSSRIVIIEGIYALSEKLRPLIDL 180 (660)
Q Consensus 115 p~l~d~~tl~e~L~~L~~--Gk~----------I~~-PiyD~s~~~rs~~~~~~v~~a~VVIVEGilaL~deLr~llDl 180 (660)
+.+++..++.+++..... +.. +.. +..+...+..++++.+++..+..++.++.+++.||+...+|.
T Consensus 82 ~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrl~la~al~~~p~llllDEPt~~LD~ 160 (207)
T PRK13539 82 NAMKPALTVAENLEFWAAFLGGEELDIAAALEAVGLAPLAHLPFGYLSAGQKRRVALARLLVSNRPIWILDEPTAALDA 160 (207)
T ss_pred CcCCCCCcHHHHHHHHHHhcCCcHHHHHHHHHHcCCHHHHcCChhhcCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCH
Confidence 777777888888754221 100 001 112233344556677778888889999999999999999997
No 107
>PRK13538 cytochrome c biogenesis protein CcmA; Provisional
Probab=99.41 E-value=3.7e-13 Score=133.83 Aligned_cols=137 Identities=19% Similarity=0.181 Sum_probs=104.6
Q ss_pred ceeeeecCceEEEEecceeeccCCcceEEEEECCCCCcHHHHHHHHHHhC-CCceEEEecCcccc------cccccccCC
Q 006117 41 DTLSFEKGFFIVIRACQLLAQKNHGIILVGVAGPSGAGKTVFTEKVLNFM-PSIAVITMDNYNDS------SRIIDGNFD 113 (660)
Q Consensus 41 ~~ls~~~g~~~vL~~Isl~i~~ge~~~IIGI~GpSGSGKSTLak~L~~lL-p~~g~I~lDg~~~~------~~~i~~vfq 113 (660)
+++++.++...++++++|.+++|+ ++||+|+||||||||+++|++.+ |..|.|.++|.... .+.++++++
T Consensus 5 ~~l~~~~~~~~~l~~vs~~i~~Ge---~~~l~G~nGsGKSTLl~~l~G~~~p~~G~v~~~g~~~~~~~~~~~~~~~~~~~ 81 (204)
T PRK13538 5 RNLACERDERILFSGLSFTLNAGE---LVQIEGPNGAGKTSLLRILAGLARPDAGEVLWQGEPIRRQRDEYHQDLLYLGH 81 (204)
T ss_pred EEEEEEECCEEEEecceEEECCCc---EEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEEcccchHHhhhheEEeCC
Confidence 445555566789999999999999 99999999999999999999998 78999999986432 134678888
Q ss_pred CCCCCchhhHHHHHHhhhc--C-c---cc-------cc-ccccccccccccceeeecCCccEEEEecceeecccccCCCC
Q 006117 114 DPRLTDYDTLLENIRGLKE--G-K---AV-------QV-PIYDFKSSSRIGYRTLEVPSSRIVIIEGIYALSEKLRPLID 179 (660)
Q Consensus 114 ~p~l~d~~tl~e~L~~L~~--G-k---~I-------~~-PiyD~s~~~rs~~~~~~v~~a~VVIVEGilaL~deLr~llD 179 (660)
++.+++..++.+++..... + . .+ .. +..+......++++.+++..+..++-++.+++.||+...+|
T Consensus 82 ~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~LS~G~~qrl~la~al~~~p~llllDEPt~~LD 161 (204)
T PRK13538 82 QPGIKTELTALENLRFYQRLHGPGDDEALWEALAQVGLAGFEDVPVRQLSAGQQRRVALARLWLTRAPLWILDEPFTAID 161 (204)
T ss_pred ccccCcCCcHHHHHHHHHHhcCccHHHHHHHHHHHcCCHHHhhCChhhcCHHHHHHHHHHHHHhcCCCEEEEeCCCccCC
Confidence 8888887889888864321 1 0 00 01 11233334456667778888889999999999999999999
Q ss_pred E
Q 006117 180 L 180 (660)
Q Consensus 180 l 180 (660)
.
T Consensus 162 ~ 162 (204)
T PRK13538 162 K 162 (204)
T ss_pred H
Confidence 7
No 108
>TIGR03864 PQQ_ABC_ATP ABC transporter, ATP-binding subunit, PQQ-dependent alcohol dehydrogenase system. Members of this protein family are the ATP-binding subunit of an ABC transporter system that is associated with PQQ biosynthesis and PQQ-dependent alcohol dehydrogenases. While this family shows homology to several efflux ABC transporter subunits, the presence of a periplasmic substrate-binding protein and association with systems for catabolism of alcohols suggests a role in import rather than detoxification.
Probab=99.41 E-value=3.7e-13 Score=136.57 Aligned_cols=137 Identities=18% Similarity=0.183 Sum_probs=105.0
Q ss_pred ceeeeecCceEEEEecceeeccCCcceEEEEECCCCCcHHHHHHHHHHhC-CCceEEEecCccccc------ccccccCC
Q 006117 41 DTLSFEKGFFIVIRACQLLAQKNHGIILVGVAGPSGAGKTVFTEKVLNFM-PSIAVITMDNYNDSS------RIIDGNFD 113 (660)
Q Consensus 41 ~~ls~~~g~~~vL~~Isl~i~~ge~~~IIGI~GpSGSGKSTLak~L~~lL-p~~g~I~lDg~~~~~------~~i~~vfq 113 (660)
+++++.++...++++++|.+.+|+ ++||+|+||||||||+++|++++ |..|.|.++|..... +.+++++|
T Consensus 5 ~~l~~~~~~~~~l~~vs~~i~~Ge---~~~i~G~nGsGKSTLl~~l~G~~~p~~G~i~~~g~~i~~~~~~~~~~i~~~~q 81 (236)
T TIGR03864 5 AGLSFAYGARRALDDVSFTVRPGE---FVALLGPNGAGKSTLFSLLTRLYVAQEGQISVAGHDLRRAPRAALARLGVVFQ 81 (236)
T ss_pred EeeEEEECCEEEEeeeEEEEcCCC---EEEEECCCCCCHHHHHHHHhCCcCCCceEEEECCEEcccCChhhhhhEEEeCC
Confidence 445555556779999999999999 99999999999999999999998 789999999874321 35789999
Q ss_pred CCCCCchhhHHHHHHhhhc--Cc--------------cccc-ccccccccccccceeeecCCccEEEEecceeecccccC
Q 006117 114 DPRLTDYDTLLENIRGLKE--GK--------------AVQV-PIYDFKSSSRIGYRTLEVPSSRIVIIEGIYALSEKLRP 176 (660)
Q Consensus 114 ~p~l~d~~tl~e~L~~L~~--Gk--------------~I~~-PiyD~s~~~rs~~~~~~v~~a~VVIVEGilaL~deLr~ 176 (660)
++.++...++.+++..... +. .... +..+...+..++++.+++..++.++.++.+++.||+..
T Consensus 82 ~~~~~~~~t~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~LS~G~~qrl~laral~~~p~llllDEP~~ 161 (236)
T TIGR03864 82 QPTLDLDLSVRQNLRYHAALHGLSRAEARERIAALLARLGLAERADDKVRELNGGHRRRVEIARALLHRPALLLLDEPTV 161 (236)
T ss_pred CCCCcccCcHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCChhhhcCChhhCCHHHHHHHHHHHHHhcCCCEEEEcCCcc
Confidence 9888777888888753211 10 0001 11233344556677788888888999999999999999
Q ss_pred CCCE
Q 006117 177 LIDL 180 (660)
Q Consensus 177 llDl 180 (660)
.+|.
T Consensus 162 ~LD~ 165 (236)
T TIGR03864 162 GLDP 165 (236)
T ss_pred CCCH
Confidence 9997
No 109
>PRK10895 lipopolysaccharide ABC transporter ATP-binding protein; Provisional
Probab=99.41 E-value=4.1e-13 Score=136.54 Aligned_cols=157 Identities=18% Similarity=0.203 Sum_probs=113.5
Q ss_pred cceeeeecCceEEEEecceeeccCCcceEEEEECCCCCcHHHHHHHHHHhC-CCceEEEecCcccc--------cccccc
Q 006117 40 EDTLSFEKGFFIVIRACQLLAQKNHGIILVGVAGPSGAGKTVFTEKVLNFM-PSIAVITMDNYNDS--------SRIIDG 110 (660)
Q Consensus 40 ~~~ls~~~g~~~vL~~Isl~i~~ge~~~IIGI~GpSGSGKSTLak~L~~lL-p~~g~I~lDg~~~~--------~~~i~~ 110 (660)
.+++++.++...++++++|.+++|+ ++||+|+||||||||+++|++++ |..|.|.++|.... ...+++
T Consensus 6 ~~~l~~~~~~~~~l~~~sl~i~~Ge---~~~l~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~i~~ 82 (241)
T PRK10895 6 AKNLAKAYKGRRVVEDVSLTVNSGE---IVGLLGPNGAGKTTTFYMVVGIVPRDAGNIIIDDEDISLLPLHARARRGIGY 82 (241)
T ss_pred EeCcEEEeCCEEEEeeeeEEEcCCc---EEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEECCCCCHHHHHHhCeEE
Confidence 3455566666789999999999999 99999999999999999999998 78999999986432 134789
Q ss_pred cCCCCCCCchhhHHHHHHhhhc--C--c--c-----------cccc-cccccccccccceeeecCCccEEEEecceeecc
Q 006117 111 NFDDPRLTDYDTLLENIRGLKE--G--K--A-----------VQVP-IYDFKSSSRIGYRTLEVPSSRIVIIEGIYALSE 172 (660)
Q Consensus 111 vfq~p~l~d~~tl~e~L~~L~~--G--k--~-----------I~~P-iyD~s~~~rs~~~~~~v~~a~VVIVEGilaL~d 172 (660)
++|++.+++..++.+++..... + . . .... ..+...+..++++..++..+..++.++.+++.|
T Consensus 83 ~~q~~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~laral~~~p~llllD 162 (241)
T PRK10895 83 LPQEASIFRRLSVYDNLMAVLQIRDDLSAEQREDRANELMEEFHIEHLRDSMGQSLSGGERRRVEIARALAANPKFILLD 162 (241)
T ss_pred eccCCcccccCcHHHHHhhhhhcccccCHHHHHHHHHHHHHHcCCHHHhhcchhhCCHHHHHHHHHHHHHhcCCCEEEEc
Confidence 9999988888899888764211 0 0 0 0000 112223345566777788888899999999999
Q ss_pred cccCCCCEEEEEEcChhHHHHHHHHHHHHHhCCC
Q 006117 173 KLRPLIDLRVSVTGGVHFDLVKRVFRDIQRVGQE 206 (660)
Q Consensus 173 eLr~llDlkIfVdad~dirLiRRI~RDv~eRGrs 206 (660)
|+...+|. .....+..+.+++...|.+
T Consensus 163 EPt~~LD~-------~~~~~l~~~l~~~~~~g~t 189 (241)
T PRK10895 163 EPFAGVDP-------ISVIDIKRIIEHLRDSGLG 189 (241)
T ss_pred CCcccCCH-------HHHHHHHHHHHHHHhcCCE
Confidence 99999997 2333334444444444544
No 110
>PRK11308 dppF dipeptide transporter ATP-binding subunit; Provisional
Probab=99.41 E-value=3.2e-13 Score=144.55 Aligned_cols=145 Identities=13% Similarity=0.219 Sum_probs=109.2
Q ss_pred ceeeeeccceeeeecC------ceEEEEecceeeccCCcceEEEEECCCCCcHHHHHHHHHHhC-CCceEEEecCcccc-
Q 006117 33 RYEIVPIEDTLSFEKG------FFIVIRACQLLAQKNHGIILVGVAGPSGAGKTVFTEKVLNFM-PSIAVITMDNYNDS- 104 (660)
Q Consensus 33 ~~ei~~~~~~ls~~~g------~~~vL~~Isl~i~~ge~~~IIGI~GpSGSGKSTLak~L~~lL-p~~g~I~lDg~~~~- 104 (660)
++++..+...|....+ ...++++|+|.+.+|+ ++||+|+||||||||+++|++++ |..|.|.++|....
T Consensus 5 ~l~v~nl~~~~~~~~~~~~~~~~~~~l~~vsl~i~~Ge---~~~IvG~sGsGKSTLl~~l~gl~~p~~G~i~~~g~~l~~ 81 (327)
T PRK11308 5 LLQAIDLKKHYPVKRGLFKPERLVKALDGVSFTLERGK---TLAVVGESGCGKSTLARLLTMIETPTGGELYYQGQDLLK 81 (327)
T ss_pred eEEEeeeEEEEcCCCCccccCCceeEEeeeEEEECCCC---EEEEECCCCCcHHHHHHHHHcCCCCCCcEEEECCEEcCc
Confidence 4555555555532212 3579999999999999 99999999999999999999998 78999999997532
Q ss_pred ---------cccccccCCCC--CCCchhhHHHHHHh-hhc--C--------------ccccc--ccccccccccccceee
Q 006117 105 ---------SRIIDGNFDDP--RLTDYDTLLENIRG-LKE--G--------------KAVQV--PIYDFKSSSRIGYRTL 154 (660)
Q Consensus 105 ---------~~~i~~vfq~p--~l~d~~tl~e~L~~-L~~--G--------------k~I~~--PiyD~s~~~rs~~~~~ 154 (660)
.+.++++||+| .+++..++.+++.. +.. + +.+.. ..++...+..++++.+
T Consensus 82 ~~~~~~~~~r~~i~~v~Q~~~~~l~p~~~v~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~gL~~~~~~~~p~~LSgGq~Q 161 (327)
T PRK11308 82 ADPEAQKLLRQKIQIVFQNPYGSLNPRKKVGQILEEPLLINTSLSAAERREKALAMMAKVGLRPEHYDRYPHMFSGGQRQ 161 (327)
T ss_pred CCHHHHHHHhCCEEEEEcCchhhcCCccCHHHHHHHHHHHccCCCHHHHHHHHHHHHHHCCCChHHhcCCCccCCHHHHH
Confidence 13578999998 46666677666642 100 0 01112 1356666777888888
Q ss_pred ecCCccEEEEecceeecccccCCCCE
Q 006117 155 EVPSSRIVIIEGIYALSEKLRPLIDL 180 (660)
Q Consensus 155 ~v~~a~VVIVEGilaL~deLr~llDl 180 (660)
++..+..++.++.+++.||+...+|.
T Consensus 162 Rv~iArAL~~~P~lLilDEPts~LD~ 187 (327)
T PRK11308 162 RIAIARALMLDPDVVVADEPVSALDV 187 (327)
T ss_pred HHHHHHHHHcCCCEEEEECCCccCCH
Confidence 99999999999999999999999997
No 111
>cd03292 ABC_FtsE_transporter FtsE is a hydrophilic nucleotide-binding protein that binds FtsX to form a heterodimeric ATP-binding cassette (ABC)-type transporter that associates with the bacterial inner membrane. The FtsE/X transporter is thought to be involved in cell division and is important for assembly or stability of the septal ring.
Probab=99.41 E-value=2.9e-13 Score=134.76 Aligned_cols=137 Identities=19% Similarity=0.188 Sum_probs=103.8
Q ss_pred ceeeeecC-ceEEEEecceeeccCCcceEEEEECCCCCcHHHHHHHHHHhC-CCceEEEecCcccc----------cccc
Q 006117 41 DTLSFEKG-FFIVIRACQLLAQKNHGIILVGVAGPSGAGKTVFTEKVLNFM-PSIAVITMDNYNDS----------SRII 108 (660)
Q Consensus 41 ~~ls~~~g-~~~vL~~Isl~i~~ge~~~IIGI~GpSGSGKSTLak~L~~lL-p~~g~I~lDg~~~~----------~~~i 108 (660)
+++++.++ ...++++++|.+++|+ ++||+|+||||||||+++|++.+ |..|.|.++|.... .+.+
T Consensus 4 ~~l~~~~~~~~~~l~~~sl~i~~G~---~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~i~~~~~~~~~~~~~~i 80 (214)
T cd03292 4 INVTKTYPNGTAALDGINISISAGE---FVFLVGPSGAGKSTLLKLIYKEELPTSGTIRVNGQDVSDLRGRAIPYLRRKI 80 (214)
T ss_pred EEEEEEeCCCceeeeeeEEEEcCCC---EEEEECCCCCCHHHHHHHHhcCCCCCceEEEECCEEcccCCHHHHHHHHHhe
Confidence 34445553 2579999999999999 99999999999999999999998 78999999986432 1347
Q ss_pred cccCCCCCCCchhhHHHHHHhhhc--C---c-----------ccccc-cccccccccccceeeecCCccEEEEecceeec
Q 006117 109 DGNFDDPRLTDYDTLLENIRGLKE--G---K-----------AVQVP-IYDFKSSSRIGYRTLEVPSSRIVIIEGIYALS 171 (660)
Q Consensus 109 ~~vfq~p~l~d~~tl~e~L~~L~~--G---k-----------~I~~P-iyD~s~~~rs~~~~~~v~~a~VVIVEGilaL~ 171 (660)
++++|++.+++..++.+++..... + . ....+ ..+...+..++++.+++..++.++.++.+++.
T Consensus 81 ~~v~q~~~~~~~~t~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~laral~~~p~llll 160 (214)
T cd03292 81 GVVFQDFRLLPDRNVYENVAFALEVTGVPPREIRKRVPAALELVGLSHKHRALPAELSGGEQQRVAIARAIVNSPTILIA 160 (214)
T ss_pred EEEecCchhccCCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCHHHhhCChhhcCHHHHHHHHHHHHHHcCCCEEEE
Confidence 899999999888888888764211 1 0 00111 12223344566777788888899999999999
Q ss_pred ccccCCCCE
Q 006117 172 EKLRPLIDL 180 (660)
Q Consensus 172 deLr~llDl 180 (660)
||+...+|.
T Consensus 161 DEPt~~LD~ 169 (214)
T cd03292 161 DEPTGNLDP 169 (214)
T ss_pred eCCCCcCCH
Confidence 999999997
No 112
>PRK11248 tauB taurine transporter ATP-binding subunit; Provisional
Probab=99.41 E-value=3.5e-13 Score=139.06 Aligned_cols=156 Identities=17% Similarity=0.149 Sum_probs=113.9
Q ss_pred ceeeeecCceEEEEecceeeccCCcceEEEEECCCCCcHHHHHHHHHHhC-CCceEEEecCcccc--cccccccCCCCCC
Q 006117 41 DTLSFEKGFFIVIRACQLLAQKNHGIILVGVAGPSGAGKTVFTEKVLNFM-PSIAVITMDNYNDS--SRIIDGNFDDPRL 117 (660)
Q Consensus 41 ~~ls~~~g~~~vL~~Isl~i~~ge~~~IIGI~GpSGSGKSTLak~L~~lL-p~~g~I~lDg~~~~--~~~i~~vfq~p~l 117 (660)
+++++.++...++++++|.+++|+ ++||+|+||||||||+++|++++ |..|.|.++|.... ...+++++|++.+
T Consensus 5 ~~l~~~~~~~~il~~vs~~i~~Ge---~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~v~q~~~~ 81 (255)
T PRK11248 5 SHLYADYGGKPALEDINLTLESGE---LLVVLGPSGCGKTTLLNLIAGFVPYQHGSITLDGKPVEGPGAERGVVFQNEGL 81 (255)
T ss_pred EEEEEEeCCeeeEeeeeEEECCCC---EEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEECCCCCCcEEEEeCCCcc
Confidence 455555566779999999999999 99999999999999999999998 78999999987542 2347889999988
Q ss_pred CchhhHHHHHHhhh--cCc-------c-------ccc-ccccccccccccceeeecCCccEEEEecceeecccccCCCCE
Q 006117 118 TDYDTLLENIRGLK--EGK-------A-------VQV-PIYDFKSSSRIGYRTLEVPSSRIVIIEGIYALSEKLRPLIDL 180 (660)
Q Consensus 118 ~d~~tl~e~L~~L~--~Gk-------~-------I~~-PiyD~s~~~rs~~~~~~v~~a~VVIVEGilaL~deLr~llDl 180 (660)
++..++.+++.... .+. . ... +..+......++++.+++..+..++.++.+++.||+...+|.
T Consensus 82 ~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~LSgGq~qrl~laral~~~p~lllLDEPt~~LD~ 161 (255)
T PRK11248 82 LPWRNVQDNVAFGLQLAGVEKMQRLEIAHQMLKKVGLEGAEKRYIWQLSGGQRQRVGIARALAANPQLLLLDEPFGALDA 161 (255)
T ss_pred CCCCcHHHHHHhHHHHcCCCHHHHHHHHHHHHHHcCChhHhhCChhhCCHHHHHHHHHHHHHhcCCCEEEEeCCCccCCH
Confidence 88888988885421 110 0 001 112233345566777788888889999999999999999997
Q ss_pred EEEEEcChhHHHHHHHHHHHH-HhCCC
Q 006117 181 RVSVTGGVHFDLVKRVFRDIQ-RVGQE 206 (660)
Q Consensus 181 kIfVdad~dirLiRRI~RDv~-eRGrs 206 (660)
.....+..+.++.. ..|.+
T Consensus 162 -------~~~~~l~~~L~~~~~~~g~t 181 (255)
T PRK11248 162 -------FTREQMQTLLLKLWQETGKQ 181 (255)
T ss_pred -------HHHHHHHHHHHHHHHhcCCE
Confidence 33344445555542 23544
No 113
>PRK10584 putative ABC transporter ATP-binding protein YbbA; Provisional
Probab=99.41 E-value=4.1e-13 Score=135.28 Aligned_cols=150 Identities=14% Similarity=0.136 Sum_probs=109.0
Q ss_pred ceeeeecCc----eEEEEecceeeccCCcceEEEEECCCCCcHHHHHHHHHHhC-CCceEEEecCcccc-----------
Q 006117 41 DTLSFEKGF----FIVIRACQLLAQKNHGIILVGVAGPSGAGKTVFTEKVLNFM-PSIAVITMDNYNDS----------- 104 (660)
Q Consensus 41 ~~ls~~~g~----~~vL~~Isl~i~~ge~~~IIGI~GpSGSGKSTLak~L~~lL-p~~g~I~lDg~~~~----------- 104 (660)
+++++.++. ..++++++|.+++|+ ++||+|+||||||||+++|++++ |..|.|.++|....
T Consensus 10 ~~l~~~~~~~~~~~~~l~~~s~~i~~Ge---~~~i~G~nGsGKSTLl~~i~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~~ 86 (228)
T PRK10584 10 HHLKKSVGQGEHELSILTGVELVVKRGE---TIALIGESGSGKSTLLAILAGLDDGSSGEVSLVGQPLHQMDEEARAKLR 86 (228)
T ss_pred eeeEEEccCCCcceEEEeccEEEEcCCC---EEEEECCCCCCHHHHHHHHHcCCCCCCeeEEECCEEcccCCHHHHHHHH
Confidence 444554443 369999999999999 99999999999999999999998 79999999986432
Q ss_pred cccccccCCCCCCCchhhHHHHHHhhh--cCc--------------cccc-ccccccccccccceeeecCCccEEEEecc
Q 006117 105 SRIIDGNFDDPRLTDYDTLLENIRGLK--EGK--------------AVQV-PIYDFKSSSRIGYRTLEVPSSRIVIIEGI 167 (660)
Q Consensus 105 ~~~i~~vfq~p~l~d~~tl~e~L~~L~--~Gk--------------~I~~-PiyD~s~~~rs~~~~~~v~~a~VVIVEGi 167 (660)
.+.+++++|++.+++..++.+++.... .+. .... ...+...+..++++.+++..+..++.++.
T Consensus 87 ~~~i~~~~q~~~l~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~Ge~qrl~la~al~~~p~ 166 (228)
T PRK10584 87 AKHVGFVFQSFMLIPTLNALENVELPALLRGESSRQSRNGAKALLEQLGLGKRLDHLPAQLSGGEQQRVALARAFNGRPD 166 (228)
T ss_pred hheEEEEEcccccCCCcCHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCHhHhhCChhhCCHHHHHHHHHHHHHhcCCC
Confidence 134788999998888778888875321 110 0001 11222334456677778888889999999
Q ss_pred eeecccccCCCCEEEEEEcChhHHHHHHHHHHH
Q 006117 168 YALSEKLRPLIDLRVSVTGGVHFDLVKRVFRDI 200 (660)
Q Consensus 168 laL~deLr~llDlkIfVdad~dirLiRRI~RDv 200 (660)
+++.||+...+|. .....+..+.+..
T Consensus 167 llllDEPt~~LD~-------~~~~~l~~~l~~~ 192 (228)
T PRK10584 167 VLFADEPTGNLDR-------QTGDKIADLLFSL 192 (228)
T ss_pred EEEEeCCCCCCCH-------HHHHHHHHHHHHH
Confidence 9999999999997 3344444444444
No 114
>PRK13646 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=99.41 E-value=2.4e-13 Score=142.44 Aligned_cols=147 Identities=14% Similarity=0.189 Sum_probs=108.4
Q ss_pred eEEEEecceeeccCCcceEEEEECCCCCcHHHHHHHHHHhC-CCceEEEecCcccc-----------cccccccCCCCC-
Q 006117 50 FIVIRACQLLAQKNHGIILVGVAGPSGAGKTVFTEKVLNFM-PSIAVITMDNYNDS-----------SRIIDGNFDDPR- 116 (660)
Q Consensus 50 ~~vL~~Isl~i~~ge~~~IIGI~GpSGSGKSTLak~L~~lL-p~~g~I~lDg~~~~-----------~~~i~~vfq~p~- 116 (660)
..+|++++|.+++|+ ++||+|+||||||||+++|++++ |+.|.|.+||.... .+.++++||+|.
T Consensus 20 ~~~l~~vsl~i~~Ge---~~~i~G~nGsGKSTLl~~L~Gl~~p~~G~i~~~g~~i~~~~~~~~~~~~~~~ig~v~q~~~~ 96 (286)
T PRK13646 20 HQAIHDVNTEFEQGK---YYAIVGQTGSGKSTLIQNINALLKPTTGTVTVDDITITHKTKDKYIRPVRKRIGMVFQFPES 96 (286)
T ss_pred cCceeeeEEEEcCCC---EEEEECCCCCCHHHHHHHHhcCCCCCCcEEEECCEECccccccchHHHHHhheEEEecChHh
Confidence 369999999999999 99999999999999999999998 79999999997532 135789999873
Q ss_pred -CCchhhHHHHHHhhhc--Cc--------------cccc--ccccccccccccceeeecCCccEEEEecceeecccccCC
Q 006117 117 -LTDYDTLLENIRGLKE--GK--------------AVQV--PIYDFKSSSRIGYRTLEVPSSRIVIIEGIYALSEKLRPL 177 (660)
Q Consensus 117 -l~d~~tl~e~L~~L~~--Gk--------------~I~~--PiyD~s~~~rs~~~~~~v~~a~VVIVEGilaL~deLr~l 177 (660)
+++ .++.+++..... +- .+.. +..+......++++.+++..+++++.++.+++.||+...
T Consensus 97 ~l~~-~tv~e~i~~~~~~~~~~~~~~~~~~~~~l~~~gL~~~~~~~~~~~LSgGq~qrv~laraL~~~p~illlDEPt~~ 175 (286)
T PRK13646 97 QLFE-DTVEREIIFGPKNFKMNLDEVKNYAHRLLMDLGFSRDVMSQSPFQMSGGQMRKIAIVSILAMNPDIIVLDEPTAG 175 (286)
T ss_pred ccch-hhHHHHHHhhHHHcCCCHHHHHHHHHHHHHHcCCChhhhhCCcccCCHHHHHHHHHHHHHHhCCCEEEEECCccc
Confidence 444 488888853211 10 0111 122333445566778888889999999999999999999
Q ss_pred CCEEEEEEcChhHHHHHHHHHHHHH-hCCCH
Q 006117 178 IDLRVSVTGGVHFDLVKRVFRDIQR-VGQEP 207 (660)
Q Consensus 178 lDlkIfVdad~dirLiRRI~RDv~e-RGrs~ 207 (660)
+|. ...+.+..+.+++.+ .|.+.
T Consensus 176 LD~-------~~~~~l~~~l~~l~~~~g~tv 199 (286)
T PRK13646 176 LDP-------QSKRQVMRLLKSLQTDENKTI 199 (286)
T ss_pred CCH-------HHHHHHHHHHHHHHHhCCCEE
Confidence 997 344455556665543 36554
No 115
>PRK11831 putative ABC transporter ATP-binding protein YrbF; Provisional
Probab=99.41 E-value=3.8e-13 Score=139.61 Aligned_cols=138 Identities=19% Similarity=0.183 Sum_probs=106.0
Q ss_pred cceeeeecCceEEEEecceeeccCCcceEEEEECCCCCcHHHHHHHHHHhC-CCceEEEecCcccc----------cccc
Q 006117 40 EDTLSFEKGFFIVIRACQLLAQKNHGIILVGVAGPSGAGKTVFTEKVLNFM-PSIAVITMDNYNDS----------SRII 108 (660)
Q Consensus 40 ~~~ls~~~g~~~vL~~Isl~i~~ge~~~IIGI~GpSGSGKSTLak~L~~lL-p~~g~I~lDg~~~~----------~~~i 108 (660)
.+++++.++...++++++|.+++|+ +++|+|+||||||||+++|++++ |..|.|.++|.... .+.+
T Consensus 10 ~~~l~~~~~~~~il~~vsl~i~~Ge---~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~i~~~~~~~~~~~~~~i 86 (269)
T PRK11831 10 MRGVSFTRGNRCIFDNISLTVPRGK---ITAIMGPSGIGKTTLLRLIGGQIAPDHGEILFDGENIPAMSRSRLYTVRKRM 86 (269)
T ss_pred EeCeEEEECCEEEEeeeEEEEcCCC---EEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEEccccChhhHHHHhhcE
Confidence 3455555666789999999999999 99999999999999999999998 78999999986432 1347
Q ss_pred cccCCCCCCCchhhHHHHHHhhh-c--C--c------------ccccc-cccccccccccceeeecCCccEEEEecceee
Q 006117 109 DGNFDDPRLTDYDTLLENIRGLK-E--G--K------------AVQVP-IYDFKSSSRIGYRTLEVPSSRIVIIEGIYAL 170 (660)
Q Consensus 109 ~~vfq~p~l~d~~tl~e~L~~L~-~--G--k------------~I~~P-iyD~s~~~rs~~~~~~v~~a~VVIVEGilaL 170 (660)
+++||++.+++..++.+++.... . + . .+..+ ..+...+..++++.+++..++.++.++.+++
T Consensus 87 ~~v~q~~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~LSgGq~qrv~laral~~~p~lll 166 (269)
T PRK11831 87 SMLFQSGALFTDMNVFDNVAYPLREHTQLPAPLLHSTVMMKLEAVGLRGAAKLMPSELSGGMARRAALARAIALEPDLIM 166 (269)
T ss_pred EEEecccccCCCCCHHHHHHHHHHHccCCCHHHHHHHHHHHHHHcCChhhhhCChhhCCHHHHHHHHHHHHHhcCCCEEE
Confidence 88999999888888998885321 1 0 0 00011 1223334556677888888889999999999
Q ss_pred cccccCCCCE
Q 006117 171 SEKLRPLIDL 180 (660)
Q Consensus 171 ~deLr~llDl 180 (660)
.||+...+|.
T Consensus 167 LDEPt~~LD~ 176 (269)
T PRK11831 167 FDEPFVGQDP 176 (269)
T ss_pred EcCCCccCCH
Confidence 9999999997
No 116
>COG4525 TauB ABC-type taurine transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=99.40 E-value=1.5e-13 Score=136.16 Aligned_cols=138 Identities=20% Similarity=0.165 Sum_probs=108.6
Q ss_pred cceeeeecCce--EEEEecceeeccCCcceEEEEECCCCCcHHHHHHHHHHhC-CCceEEEecCccccc--ccccccCCC
Q 006117 40 EDTLSFEKGFF--IVIRACQLLAQKNHGIILVGVAGPSGAGKTVFTEKVLNFM-PSIAVITMDNYNDSS--RIIDGNFDD 114 (660)
Q Consensus 40 ~~~ls~~~g~~--~vL~~Isl~i~~ge~~~IIGI~GpSGSGKSTLak~L~~lL-p~~g~I~lDg~~~~~--~~i~~vfq~ 114 (660)
..+++.++... .+++++|+.+.+|+ .+.+.||||||||||++.++++. |..|.|.+++..... ...+.+||+
T Consensus 6 ~~~~sl~y~g~~~~~le~vsL~ia~ge---~vv~lGpSGcGKTTLLnl~AGf~~P~~G~i~l~~r~i~gPgaergvVFQ~ 82 (259)
T COG4525 6 VSHLSLSYEGKPRSALEDVSLTIASGE---LVVVLGPSGCGKTTLLNLIAGFVTPSRGSIQLNGRRIEGPGAERGVVFQN 82 (259)
T ss_pred hhheEEecCCcchhhhhccceeecCCC---EEEEEcCCCccHHHHHHHHhcCcCcccceEEECCEeccCCCccceeEecc
Confidence 34444555444 59999999999999 99999999999999999999998 899999999986543 456889999
Q ss_pred CCCCchhhHHHHHHhhhc--Cc--------------cccccccc-ccccccccceeeecCCccEEEEecceeecccccCC
Q 006117 115 PRLTDYDTLLENIRGLKE--GK--------------AVQVPIYD-FKSSSRIGYRTLEVPSSRIVIIEGIYALSEKLRPL 177 (660)
Q Consensus 115 p~l~d~~tl~e~L~~L~~--Gk--------------~I~~PiyD-~s~~~rs~~~~~~v~~a~VVIVEGilaL~deLr~l 177 (660)
+.+++|.++.+|++.-.. |- .+-..-++ +...+.+++..+++..++.+.+|+.+++.||++..
T Consensus 83 ~~LlPWl~~~dNvafgL~l~Gi~k~~R~~~a~q~l~~VgL~~~~~~~i~qLSGGmrQRvGiARALa~eP~~LlLDEPfgA 162 (259)
T COG4525 83 EALLPWLNVIDNVAFGLQLRGIEKAQRREIAHQMLALVGLEGAEHKYIWQLSGGMRQRVGIARALAVEPQLLLLDEPFGA 162 (259)
T ss_pred CccchhhHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHhCcccccccceEeecchHHHHHHHHHHhhcCcceEeecCchhh
Confidence 999999999999975322 10 11112222 22334567778889999999999999999999998
Q ss_pred CCE
Q 006117 178 IDL 180 (660)
Q Consensus 178 lDl 180 (660)
+|.
T Consensus 163 lDa 165 (259)
T COG4525 163 LDA 165 (259)
T ss_pred HHH
Confidence 885
No 117
>PRK11264 putative amino-acid ABC transporter ATP-binding protein YecC; Provisional
Probab=99.40 E-value=3.5e-13 Score=137.62 Aligned_cols=138 Identities=19% Similarity=0.168 Sum_probs=105.4
Q ss_pred cceeeeecCceEEEEecceeeccCCcceEEEEECCCCCcHHHHHHHHHHhC-CCceEEEecCcccc--------------
Q 006117 40 EDTLSFEKGFFIVIRACQLLAQKNHGIILVGVAGPSGAGKTVFTEKVLNFM-PSIAVITMDNYNDS-------------- 104 (660)
Q Consensus 40 ~~~ls~~~g~~~vL~~Isl~i~~ge~~~IIGI~GpSGSGKSTLak~L~~lL-p~~g~I~lDg~~~~-------------- 104 (660)
.+++++.++...++++++|.+++|+ ++||+|+||||||||+++|++.+ |..|.|.++|....
T Consensus 6 ~~~l~~~~~~~~~l~~vs~~i~~Ge---~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~~~~ 82 (250)
T PRK11264 6 VKNLVKKFHGQTVLHGIDLEVKPGE---VVAIIGPSGSGKTTLLRCINLLEQPEAGTIRVGDITIDTARSLSQQKGLIRQ 82 (250)
T ss_pred EeceEEEECCeeeeccceEEEcCCC---EEEEECCCCCCHHHHHHHHhcCCCCCCeEEEECCEEccccccccchhhHHHH
Confidence 3455556666689999999999999 99999999999999999999998 78999999886421
Q ss_pred -cccccccCCCCCCCchhhHHHHHHhhh---cCc-------cc-------cc-ccccccccccccceeeecCCccEEEEe
Q 006117 105 -SRIIDGNFDDPRLTDYDTLLENIRGLK---EGK-------AV-------QV-PIYDFKSSSRIGYRTLEVPSSRIVIIE 165 (660)
Q Consensus 105 -~~~i~~vfq~p~l~d~~tl~e~L~~L~---~Gk-------~I-------~~-PiyD~s~~~rs~~~~~~v~~a~VVIVE 165 (660)
...+++++|++.+++..++.+++.... .+. .+ .. +..+...+..++++.+++..+..++.+
T Consensus 83 ~~~~i~~v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~LS~Gq~qrv~la~al~~~ 162 (250)
T PRK11264 83 LRQHVGFVFQNFNLFPHRTVLENIIEGPVIVKGEPKEEATARARELLAKVGLAGKETSYPRRLSGGQQQRVAIARALAMR 162 (250)
T ss_pred hhhhEEEEecCcccCCCCCHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCcchhhCChhhCChHHHHHHHHHHHHhcC
Confidence 134788999998888888988885311 110 00 01 112333445566778888888899999
Q ss_pred cceeecccccCCCCE
Q 006117 166 GIYALSEKLRPLIDL 180 (660)
Q Consensus 166 GilaL~deLr~llDl 180 (660)
+.+++.||+...+|.
T Consensus 163 p~lllLDEPt~~LD~ 177 (250)
T PRK11264 163 PEVILFDEPTSALDP 177 (250)
T ss_pred CCEEEEeCCCccCCH
Confidence 999999999999997
No 118
>cd03295 ABC_OpuCA_Osmoprotection OpuCA is a the ATP binding component of a bacterial solute transporter that serves a protective role to cells growing in a hyperosmolar environment. ABC (ATP-binding cassette) transporter nucleotide-binding domain; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition, to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.40 E-value=4.4e-13 Score=136.56 Aligned_cols=156 Identities=20% Similarity=0.207 Sum_probs=113.2
Q ss_pred ceeeeecCc-eEEEEecceeeccCCcceEEEEECCCCCcHHHHHHHHHHhC-CCceEEEecCcccc-------ccccccc
Q 006117 41 DTLSFEKGF-FIVIRACQLLAQKNHGIILVGVAGPSGAGKTVFTEKVLNFM-PSIAVITMDNYNDS-------SRIIDGN 111 (660)
Q Consensus 41 ~~ls~~~g~-~~vL~~Isl~i~~ge~~~IIGI~GpSGSGKSTLak~L~~lL-p~~g~I~lDg~~~~-------~~~i~~v 111 (660)
+++++.++. ..++++++|.+++|+ ++||+|+||||||||+++|++++ |..|.|.++|.... ...++++
T Consensus 4 ~~l~~~~~~~~~~l~~is~~i~~Ge---~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~i~~~ 80 (242)
T cd03295 4 ENVTKRYGGGKKAVNNLNLEIAKGE---FLVLIGPSGSGKTTTMKMINRLIEPTSGEIFIDGEDIREQDPVELRRKIGYV 80 (242)
T ss_pred EEEEEEeCCcceEeeeeEEEECCCC---EEEEECCCCCCHHHHHHHHhcCCCCCCceEEECCeEcCcCChHHhhcceEEE
Confidence 344555555 679999999999999 99999999999999999999998 78999999986432 1347899
Q ss_pred CCCCCCCchhhHHHHHHhhhc--C--------------cccccc---cccccccccccceeeecCCccEEEEecceeecc
Q 006117 112 FDDPRLTDYDTLLENIRGLKE--G--------------KAVQVP---IYDFKSSSRIGYRTLEVPSSRIVIIEGIYALSE 172 (660)
Q Consensus 112 fq~p~l~d~~tl~e~L~~L~~--G--------------k~I~~P---iyD~s~~~rs~~~~~~v~~a~VVIVEGilaL~d 172 (660)
+|++.+++..++.+++..... + ..+..+ ..+......++++.+++..++.++-++.+++.|
T Consensus 81 ~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~LS~G~~qrv~laral~~~p~llllD 160 (242)
T cd03295 81 IQQIGLFPHMTVEENIALVPKLLKWPKEKIRERADELLALVGLDPAEFADRYPHELSGGQQQRVGVARALAADPPLLLMD 160 (242)
T ss_pred ccCccccCCCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCCcHHHHhcChhhCCHHHHHHHHHHHHHhcCCCEEEec
Confidence 999999888899998854211 1 001111 123333445667777888889999999999999
Q ss_pred cccCCCCEEEEEEcChhHHHHHHHHHHHHH-hCCC
Q 006117 173 KLRPLIDLRVSVTGGVHFDLVKRVFRDIQR-VGQE 206 (660)
Q Consensus 173 eLr~llDlkIfVdad~dirLiRRI~RDv~e-RGrs 206 (660)
|+...+|. .....+..+.+++.. +|.+
T Consensus 161 EPt~~LD~-------~~~~~l~~~L~~~~~~~g~t 188 (242)
T cd03295 161 EPFGALDP-------ITRDQLQEEFKRLQQELGKT 188 (242)
T ss_pred CCcccCCH-------HHHHHHHHHHHHHHHHcCCE
Confidence 99999997 333344444444433 2544
No 119
>TIGR03410 urea_trans_UrtE urea ABC transporter, ATP-binding protein UrtE. Members of this protein family are ABC transporter ATP-binding subunits associated with urea transport and metabolism. This protein is found in a conserved five-gene transport operon typically found adjacent to urease genes. It was shown in Cyanobacteria that disruption leads to the loss of high-affinity urea transport activity.
Probab=99.40 E-value=3.6e-13 Score=135.87 Aligned_cols=137 Identities=15% Similarity=0.141 Sum_probs=104.9
Q ss_pred ceeeeecCceEEEEecceeeccCCcceEEEEECCCCCcHHHHHHHHHHhC-CCceEEEecCcccc--------ccccccc
Q 006117 41 DTLSFEKGFFIVIRACQLLAQKNHGIILVGVAGPSGAGKTVFTEKVLNFM-PSIAVITMDNYNDS--------SRIIDGN 111 (660)
Q Consensus 41 ~~ls~~~g~~~vL~~Isl~i~~ge~~~IIGI~GpSGSGKSTLak~L~~lL-p~~g~I~lDg~~~~--------~~~i~~v 111 (660)
+++++.++...++++++|.+++|+ ++||+|+||||||||+++|++.+ |..|.|.++|.... .+.++++
T Consensus 4 ~~l~~~~~~~~~l~~vs~~i~~Ge---~~~l~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~i~~~ 80 (230)
T TIGR03410 4 SNLNVYYGQSHILRGVSLEVPKGE---VTCVLGRNGVGKTTLLKTLMGLLPVKSGSIRLDGEDITKLPPHERARAGIAYV 80 (230)
T ss_pred EeEEEEeCCeEEecceeeEECCCC---EEEEECCCCCCHHHHHHHHhCCCCCCCCEEEECCEECCCCCHHHHHHhCeEEe
Confidence 445566666689999999999999 99999999999999999999998 78999999986432 1347899
Q ss_pred CCCCCCCchhhHHHHHHhhhc--Ccc-----------cc-c-ccccccccccccceeeecCCccEEEEecceeecccccC
Q 006117 112 FDDPRLTDYDTLLENIRGLKE--GKA-----------VQ-V-PIYDFKSSSRIGYRTLEVPSSRIVIIEGIYALSEKLRP 176 (660)
Q Consensus 112 fq~p~l~d~~tl~e~L~~L~~--Gk~-----------I~-~-PiyD~s~~~rs~~~~~~v~~a~VVIVEGilaL~deLr~ 176 (660)
+|++.+++..++.+++..... +.. .. . ...+......++++..++..++.++-++.+++.||+..
T Consensus 81 ~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~l~~~~~l~~~~~~~~~~LS~G~~qrv~la~al~~~p~illlDEPt~ 160 (230)
T TIGR03410 81 PQGREIFPRLTVEENLLTGLAALPRRSRKIPDEIYELFPVLKEMLGRRGGDLSGGQQQQLAIARALVTRPKLLLLDEPTE 160 (230)
T ss_pred ccCCcccCCCcHHHHHHHHHHhcCcchHHHHHHHHHHHHhHHHHhhCChhhCCHHHHHHHHHHHHHhcCCCEEEecCCcc
Confidence 999999988899988864211 110 00 0 11223333455667777888888888999999999999
Q ss_pred CCCE
Q 006117 177 LIDL 180 (660)
Q Consensus 177 llDl 180 (660)
.+|.
T Consensus 161 ~LD~ 164 (230)
T TIGR03410 161 GIQP 164 (230)
T ss_pred cCCH
Confidence 9997
No 120
>PRK13543 cytochrome c biogenesis protein CcmA; Provisional
Probab=99.40 E-value=4.8e-13 Score=134.11 Aligned_cols=138 Identities=20% Similarity=0.174 Sum_probs=105.2
Q ss_pred cceeeeecCceEEEEecceeeccCCcceEEEEECCCCCcHHHHHHHHHHhC-CCceEEEecCcccc----cccccccCCC
Q 006117 40 EDTLSFEKGFFIVIRACQLLAQKNHGIILVGVAGPSGAGKTVFTEKVLNFM-PSIAVITMDNYNDS----SRIIDGNFDD 114 (660)
Q Consensus 40 ~~~ls~~~g~~~vL~~Isl~i~~ge~~~IIGI~GpSGSGKSTLak~L~~lL-p~~g~I~lDg~~~~----~~~i~~vfq~ 114 (660)
.+++++.++...++++++|.+++|+ +++|+|+||||||||+++|++.+ |..|.|.++|.... .+.+++++|.
T Consensus 14 ~~~l~~~~~~~~il~~vs~~i~~Ge---~~~i~G~nGsGKSTLl~~i~G~~~~~~G~i~~~g~~i~~~~~~~~i~~~~q~ 90 (214)
T PRK13543 14 AHALAFSRNEEPVFGPLDFHVDAGE---ALLVQGDNGAGKTTLLRVLAGLLHVESGQIQIDGKTATRGDRSRFMAYLGHL 90 (214)
T ss_pred EeeEEEecCCceeeecceEEECCCC---EEEEEcCCCCCHHHHHHHHhCCCCCCCeeEEECCEEccchhhhhceEEeecC
Confidence 3555555566679999999999999 99999999999999999999998 78999999987532 2347788998
Q ss_pred CCCCchhhHHHHHHhhhc--Ccc-----------cccc-cccccccccccceeeecCCccEEEEecceeecccccCCCCE
Q 006117 115 PRLTDYDTLLENIRGLKE--GKA-----------VQVP-IYDFKSSSRIGYRTLEVPSSRIVIIEGIYALSEKLRPLIDL 180 (660)
Q Consensus 115 p~l~d~~tl~e~L~~L~~--Gk~-----------I~~P-iyD~s~~~rs~~~~~~v~~a~VVIVEGilaL~deLr~llDl 180 (660)
+.+++..++.+++..... +.. +..+ ..+......++++.+++..++.++.++.+++.||+...+|.
T Consensus 91 ~~~~~~~t~~e~l~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~laral~~~p~llllDEPt~~LD~ 170 (214)
T PRK13543 91 PGLKADLSTLENLHFLCGLHGRRAKQMPGSALAIVGLAGYEDTLVRQLSAGQKKRLALARLWLSPAPLWLLDEPYANLDL 170 (214)
T ss_pred cccccCCcHHHHHHHHHHhcCCcHHHHHHHHHHHcCChhhccCChhhCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCH
Confidence 888877788888754221 100 1111 12333345566777788888899999999999999999997
No 121
>cd03257 ABC_NikE_OppD_transporters The ABC transporter subfamily specific for the transport of dipeptides, oligopeptides (OppD), and nickel (NikDE). The NikABCDE system of E. coli belongs to this family and is composed of the periplasmic binding protein NikA, two integral membrane components (NikB and NikC), and two ATPase (NikD and NikE). The NikABCDE transporter is synthesized under anaerobic conditions to meet the increased demand for nickel resulting from hydrogenase synthesis. The molecular mechanism of nickel uptake in many bacteria and most archaea is not known. Many other members of this ABC family are also involved in the uptake of dipeptides and oligopeptides. The oligopeptide transport system (Opp) is a five-component ABC transport composed of a membrane-anchored substrate binding proteins (SRP), OppA, two transmembrane proteins, OppB and OppC, and two ATP-binding domains, OppD and OppF.
Probab=99.40 E-value=3.9e-13 Score=134.94 Aligned_cols=127 Identities=20% Similarity=0.323 Sum_probs=96.9
Q ss_pred EEEEecceeeccCCcceEEEEECCCCCcHHHHHHHHHHhC-CCceEEEecCcccc----------cccccccCCCC--CC
Q 006117 51 IVIRACQLLAQKNHGIILVGVAGPSGAGKTVFTEKVLNFM-PSIAVITMDNYNDS----------SRIIDGNFDDP--RL 117 (660)
Q Consensus 51 ~vL~~Isl~i~~ge~~~IIGI~GpSGSGKSTLak~L~~lL-p~~g~I~lDg~~~~----------~~~i~~vfq~p--~l 117 (660)
.++++++|.+++|+ ++||+|+||||||||+++|++++ |..|.|.++|.... .+.+++++|++ .+
T Consensus 19 ~~l~~vs~~i~~Ge---~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~~~i~~~~q~~~~~~ 95 (228)
T cd03257 19 KALDDVSFSIKKGE---TLGLVGESGSGKSTLARAILGLLKPTSGSIIFDGKDLLKLSRRLRKIRRKEIQMVFQDPMSSL 95 (228)
T ss_pred eeecCceeEEcCCC---EEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEEccccchhhHHHhhccEEEEecCchhhc
Confidence 79999999999999 99999999999999999999998 79999999986432 13578899998 35
Q ss_pred CchhhHHHHHHhhh--cC--------c--------cccc--ccccccccccccceeeecCCccEEEEecceeecccccCC
Q 006117 118 TDYDTLLENIRGLK--EG--------K--------AVQV--PIYDFKSSSRIGYRTLEVPSSRIVIIEGIYALSEKLRPL 177 (660)
Q Consensus 118 ~d~~tl~e~L~~L~--~G--------k--------~I~~--PiyD~s~~~rs~~~~~~v~~a~VVIVEGilaL~deLr~l 177 (660)
++..++.+++.... .+ . .... +..+...+..++++.+++..++.++.++.+++.||+...
T Consensus 96 ~~~~tv~~nl~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LS~G~~qrv~laral~~~p~lllLDEPt~~ 175 (228)
T cd03257 96 NPRMTIGEQIAEPLRIHGKLSKKEARKEAVLLLLVGVGLPEEVLNRYPHELSGGQRQRVAIARALALNPKLLIADEPTSA 175 (228)
T ss_pred CCcCCHHHHHHHHHHhccCCcHHHHHHHHHHHHHHHCCCChhHhhCCchhcCHHHHHHHHHHHHHhcCCCEEEecCCCCC
Confidence 55677888774211 00 0 0011 112333344566778888888999999999999999999
Q ss_pred CCE
Q 006117 178 IDL 180 (660)
Q Consensus 178 lDl 180 (660)
+|.
T Consensus 176 LD~ 178 (228)
T cd03257 176 LDV 178 (228)
T ss_pred CCH
Confidence 997
No 122
>cd03232 ABC_PDR_domain2 The pleiotropic drug resistance-like (PDR) family of ATP-binding cassette (ABC) transporters. PDR is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. This PDR subfamily represents domain I of its (ABC-IM)2 organization. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds including sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.40 E-value=5.2e-13 Score=131.83 Aligned_cols=116 Identities=12% Similarity=0.003 Sum_probs=96.3
Q ss_pred eEEEEecceeeccCCcceEEEEECCCCCcHHHHHHHHHHhC---CCceEEEecCcccc---cccccccCCCCCCCchhhH
Q 006117 50 FIVIRACQLLAQKNHGIILVGVAGPSGAGKTVFTEKVLNFM---PSIAVITMDNYNDS---SRIIDGNFDDPRLTDYDTL 123 (660)
Q Consensus 50 ~~vL~~Isl~i~~ge~~~IIGI~GpSGSGKSTLak~L~~lL---p~~g~I~lDg~~~~---~~~i~~vfq~p~l~d~~tl 123 (660)
..++++++|.+++|+ +++|+|+||||||||+++|++.. |..|.|.+|+.... .+.+++++|++.+++..++
T Consensus 20 ~~~l~~vs~~i~~Ge---~~~l~G~nGsGKSTLl~~l~G~~~~~~~~G~i~~~g~~~~~~~~~~i~~~~q~~~~~~~~tv 96 (192)
T cd03232 20 RQLLNNISGYVKPGT---LTALMGESGAGKTTLLDVLAGRKTAGVITGEILINGRPLDKNFQRSTGYVEQQDVHSPNLTV 96 (192)
T ss_pred eEeEEccEEEEeCCc---EEEEECCCCCCHHHHHHHHhCCCcCCCcceEEEECCEehHHHhhhceEEecccCccccCCcH
Confidence 579999999999999 99999999999999999999974 58999999987532 2457889999988888899
Q ss_pred HHHHHhhhcCcccccccccccccccccceeeecCCccEEEEecceeecccccCCCCE
Q 006117 124 LENIRGLKEGKAVQVPIYDFKSSSRIGYRTLEVPSSRIVIIEGIYALSEKLRPLIDL 180 (660)
Q Consensus 124 ~e~L~~L~~Gk~I~~PiyD~s~~~rs~~~~~~v~~a~VVIVEGilaL~deLr~llDl 180 (660)
.+++..... .. ..++++.+++..++.++.++.+++.||+...+|.
T Consensus 97 ~~~l~~~~~---~~---------~LSgGe~qrv~la~al~~~p~vlllDEP~~~LD~ 141 (192)
T cd03232 97 REALRFSAL---LR---------GLSVEQRKRLTIGVELAAKPSILFLDEPTSGLDS 141 (192)
T ss_pred HHHHHHHHH---Hh---------cCCHHHhHHHHHHHHHhcCCcEEEEeCCCcCCCH
Confidence 999874221 00 4555677778888888999999999999999997
No 123
>cd03263 ABC_subfamily_A The ABCA subfamily mediates the transport of a variety of lipid compounds. Mutations of members of ABCA subfamily are associated with human genetic diseases, such as, familial high-density lipoprotein (HDL) deficiency, neonatal surfactant deficiency, degenerative retinopathies, and congenital keratinization disorders. The ABCA1 protein is involved in disorders of cholesterol transport and high-density lipoprotein (HDL) biosynthesis. The ABCA4 (ABCR) protein transports vitamin A derivatives in the outer segments of photoreceptor cells, and therefore, performs a crucial step in the visual cycle. The ABCA genes are not present in yeast. However, evolutionary studies of ABCA genes indicate that they arose as transporters that subsequently duplicated and that certain sets of ABCA genes were lost in different eukaryotic lineages.
Probab=99.40 E-value=3.7e-13 Score=134.80 Aligned_cols=136 Identities=16% Similarity=0.100 Sum_probs=104.3
Q ss_pred eeeeecCc--eEEEEecceeeccCCcceEEEEECCCCCcHHHHHHHHHHhC-CCceEEEecCcccc------cccccccC
Q 006117 42 TLSFEKGF--FIVIRACQLLAQKNHGIILVGVAGPSGAGKTVFTEKVLNFM-PSIAVITMDNYNDS------SRIIDGNF 112 (660)
Q Consensus 42 ~ls~~~g~--~~vL~~Isl~i~~ge~~~IIGI~GpSGSGKSTLak~L~~lL-p~~g~I~lDg~~~~------~~~i~~vf 112 (660)
++++.++. ..++++++|.+++|+ ++||+|+||||||||+++|++++ |..|.|.++|.... .+.+++++
T Consensus 5 ~l~~~~~~~~~~il~~is~~i~~Ge---~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~~i~~v~ 81 (220)
T cd03263 5 NLTKTYKKGTKPAVDDLSLNVYKGE---IFGLLGHNGAGKTTTLKMLTGELRPTSGTAYINGYSIRTDRKAARQSLGYCP 81 (220)
T ss_pred eeEEEeCCCCceeecceEEEEcCCc---EEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEecccchHHHhhhEEEec
Confidence 44455544 679999999999999 99999999999999999999998 78999999987532 23478999
Q ss_pred CCCCCCchhhHHHHHHhhhc--Cc--------------cccc-ccccccccccccceeeecCCccEEEEecceeeccccc
Q 006117 113 DDPRLTDYDTLLENIRGLKE--GK--------------AVQV-PIYDFKSSSRIGYRTLEVPSSRIVIIEGIYALSEKLR 175 (660)
Q Consensus 113 q~p~l~d~~tl~e~L~~L~~--Gk--------------~I~~-PiyD~s~~~rs~~~~~~v~~a~VVIVEGilaL~deLr 175 (660)
|++.+++..++.+++..... +. .... +..+...+..++++.+++..+..++.++.+++.||+.
T Consensus 82 q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~la~al~~~p~llllDEP~ 161 (220)
T cd03263 82 QFDALFDELTVREHLRFYARLKGLPKSEIKEEVELLLRVLGLTDKANKRARTLSGGMKRKLSLAIALIGGPSVLLLDEPT 161 (220)
T ss_pred CcCCccccCCHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCHHHHhChhhhCCHHHHHHHHHHHHHhcCCCEEEECCCC
Confidence 99988888888888764221 10 0111 1122333445566777888888999999999999999
Q ss_pred CCCCE
Q 006117 176 PLIDL 180 (660)
Q Consensus 176 ~llDl 180 (660)
..+|.
T Consensus 162 ~~LD~ 166 (220)
T cd03263 162 SGLDP 166 (220)
T ss_pred CCCCH
Confidence 99997
No 124
>cd03294 ABC_Pro_Gly_Bertaine This family comprises the glycine betaine/L-proline ATP binding subunit in bacteria and its equivalents in archaea. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporters is the obligatory coupling of ATP hydrolysis to substrate translocation. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.39 E-value=3.1e-13 Score=140.36 Aligned_cols=138 Identities=17% Similarity=0.187 Sum_probs=107.8
Q ss_pred cceeeeecCceEEEEecceeeccCCcceEEEEECCCCCcHHHHHHHHHHhC-CCceEEEecCcccc-----------ccc
Q 006117 40 EDTLSFEKGFFIVIRACQLLAQKNHGIILVGVAGPSGAGKTVFTEKVLNFM-PSIAVITMDNYNDS-----------SRI 107 (660)
Q Consensus 40 ~~~ls~~~g~~~vL~~Isl~i~~ge~~~IIGI~GpSGSGKSTLak~L~~lL-p~~g~I~lDg~~~~-----------~~~ 107 (660)
.+.+...++...++++++|.+++|+ +++|+|+||||||||+++|++++ |..|.|.++|.... ...
T Consensus 27 ~~~~~~~~~~~~il~~is~~i~~Ge---~~~l~G~nGsGKSTLl~~L~Gl~~p~~G~i~i~g~~~~~~~~~~~~~~~~~~ 103 (269)
T cd03294 27 KEEILKKTGQTVGVNDVSLDVREGE---IFVIMGLSGSGKSTLLRCINRLIEPTSGKVLIDGQDIAAMSRKELRELRRKK 103 (269)
T ss_pred hhhhhhhcCCceEeeeeEEEEcCCC---EEEEECCCCCCHHHHHHHHhcCCCCCCeEEEECCEEccccChhhhhhhhcCc
Confidence 3455566678889999999999999 99999999999999999999998 78999999996432 135
Q ss_pred ccccCCCCCCCchhhHHHHHHhhhc--C--c------------cccc-ccccccccccccceeeecCCccEEEEecceee
Q 006117 108 IDGNFDDPRLTDYDTLLENIRGLKE--G--K------------AVQV-PIYDFKSSSRIGYRTLEVPSSRIVIIEGIYAL 170 (660)
Q Consensus 108 i~~vfq~p~l~d~~tl~e~L~~L~~--G--k------------~I~~-PiyD~s~~~rs~~~~~~v~~a~VVIVEGilaL 170 (660)
+++++|++.+++..++.+++..... + . .+.. +..+...+..++++.+++..+..++.++.+++
T Consensus 104 i~~v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~Gq~qrv~lAral~~~p~ill 183 (269)
T cd03294 104 ISMVFQSFALLPHRTVLENVAFGLEVQGVPRAEREERAAEALELVGLEGWEHKYPDELSGGMQQRVGLARALAVDPDILL 183 (269)
T ss_pred EEEEecCcccCCCCcHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCHhHhhCCcccCCHHHHHHHHHHHHHhcCCCEEE
Confidence 7899999998888899988854210 1 0 0111 11233344566678888888899999999999
Q ss_pred cccccCCCCE
Q 006117 171 SEKLRPLIDL 180 (660)
Q Consensus 171 ~deLr~llDl 180 (660)
.||+...+|.
T Consensus 184 LDEPt~~LD~ 193 (269)
T cd03294 184 MDEAFSALDP 193 (269)
T ss_pred EcCCCccCCH
Confidence 9999999997
No 125
>PRK11247 ssuB aliphatic sulfonates transport ATP-binding subunit; Provisional
Probab=99.39 E-value=4.1e-13 Score=139.05 Aligned_cols=138 Identities=20% Similarity=0.181 Sum_probs=106.7
Q ss_pred cceeeeecCceEEEEecceeeccCCcceEEEEECCCCCcHHHHHHHHHHhC-CCceEEEecCcccc--cccccccCCCCC
Q 006117 40 EDTLSFEKGFFIVIRACQLLAQKNHGIILVGVAGPSGAGKTVFTEKVLNFM-PSIAVITMDNYNDS--SRIIDGNFDDPR 116 (660)
Q Consensus 40 ~~~ls~~~g~~~vL~~Isl~i~~ge~~~IIGI~GpSGSGKSTLak~L~~lL-p~~g~I~lDg~~~~--~~~i~~vfq~p~ 116 (660)
.+++++.++...++++++|.+++|+ ++||+|+||||||||+++|++++ |+.|.|.+++.... .+.+++++|++.
T Consensus 15 i~~l~~~~~~~~il~~isl~i~~Ge---~~~I~G~NGsGKSTLlk~l~Gl~~p~~G~i~~~g~~~~~~~~~i~~v~q~~~ 91 (257)
T PRK11247 15 LNAVSKRYGERTVLNQLDLHIPAGQ---FVAVVGRSGCGKSTLLRLLAGLETPSAGELLAGTAPLAEAREDTRLMFQDAR 91 (257)
T ss_pred EEEEEEEECCcceeeeeEEEEcCCC---EEEEECCCCCCHHHHHHHHhcCCCCCCeEEEECCEEHHHhhCceEEEecCcc
Confidence 3455555566679999999999999 99999999999999999999998 78999999886432 245789999999
Q ss_pred CCchhhHHHHHHhhhcC---c-------cccc-ccccccccccccceeeecCCccEEEEecceeecccccCCCCE
Q 006117 117 LTDYDTLLENIRGLKEG---K-------AVQV-PIYDFKSSSRIGYRTLEVPSSRIVIIEGIYALSEKLRPLIDL 180 (660)
Q Consensus 117 l~d~~tl~e~L~~L~~G---k-------~I~~-PiyD~s~~~rs~~~~~~v~~a~VVIVEGilaL~deLr~llDl 180 (660)
+++..++.+++...... . .... +..+......++++.+++..++.++.++.+++.||+...+|.
T Consensus 92 l~~~~tv~enl~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~LSgGqkqrl~laraL~~~p~lllLDEPt~~LD~ 166 (257)
T PRK11247 92 LLPWKKVIDNVGLGLKGQWRDAALQALAAVGLADRANEWPAALSGGQKQRVALARALIHRPGLLLLDEPLGALDA 166 (257)
T ss_pred CCCCCcHHHHHHhcccchHHHHHHHHHHHcCChhHhcCChhhCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCH
Confidence 88888999988642111 0 0111 112333445666778888888999999999999999999997
No 126
>cd03215 ABC_Carb_Monos_II This family represents domain II of the carbohydrate uptake proteins that transport only monosaccharides (Monos). The Carb_Monos family is involved in the uptake of monosaccharides, such as pentoses (such as xylose, arabinose, and ribose) and hexoses (such as xylose, arabinose, and ribose), that cannot be broken down to simple sugars by hydrolysis. In members of Carb_Monos family the single hydrophobic gene product forms a homodimer, while the ABC protein represents a fusion of two nucleotide-binding domains. However, it is assumed that two copies of the ABC domains are present in the assembled transporter.
Probab=99.39 E-value=7.4e-13 Score=129.57 Aligned_cols=129 Identities=20% Similarity=0.212 Sum_probs=100.3
Q ss_pred EEEecceeeccCCcceEEEEECCCCCcHHHHHHHHHHhC-CCceEEEecCcccc--------cccccccCCCC---CCCc
Q 006117 52 VIRACQLLAQKNHGIILVGVAGPSGAGKTVFTEKVLNFM-PSIAVITMDNYNDS--------SRIIDGNFDDP---RLTD 119 (660)
Q Consensus 52 vL~~Isl~i~~ge~~~IIGI~GpSGSGKSTLak~L~~lL-p~~g~I~lDg~~~~--------~~~i~~vfq~p---~l~d 119 (660)
++++++|.+++|+ +++|+|+||||||||+++|++.+ |..|.|.++|.... .+.++++||++ .+++
T Consensus 15 ~l~~vs~~i~~G~---~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~i~~~~q~~~~~~~~~ 91 (182)
T cd03215 15 AVRDVSFEVRAGE---IVGIAGLVGNGQTELAEALFGLRPPASGEITLDGKPVTRRSPRDAIRAGIAYVPEDRKREGLVL 91 (182)
T ss_pred eecceEEEEcCCc---EEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEECCccCHHHHHhCCeEEecCCcccCcccC
Confidence 8999999999999 99999999999999999999998 78999999986432 13578899985 4677
Q ss_pred hhhHHHHHHhhhcCcccccccccccccccccceeeecCCccEEEEecceeecccccCCCCEEEEEEcChhHHHHHHHHHH
Q 006117 120 YDTLLENIRGLKEGKAVQVPIYDFKSSSRIGYRTLEVPSSRIVIIEGIYALSEKLRPLIDLRVSVTGGVHFDLVKRVFRD 199 (660)
Q Consensus 120 ~~tl~e~L~~L~~Gk~I~~PiyD~s~~~rs~~~~~~v~~a~VVIVEGilaL~deLr~llDlkIfVdad~dirLiRRI~RD 199 (660)
..++.+++..... .++++.+++..+..++.++.+++.||+...+|. ...+.+..+.++
T Consensus 92 ~~t~~e~l~~~~~---------------LS~G~~qrl~la~al~~~p~llllDEP~~~LD~-------~~~~~l~~~l~~ 149 (182)
T cd03215 92 DLSVAENIALSSL---------------LSGGNQQKVVLARWLARDPRVLILDEPTRGVDV-------GAKAEIYRLIRE 149 (182)
T ss_pred CCcHHHHHHHHhh---------------cCHHHHHHHHHHHHHccCCCEEEECCCCcCCCH-------HHHHHHHHHHHH
Confidence 7889998865321 345566677888889999999999999999997 333444444444
Q ss_pred HHHhCC
Q 006117 200 IQRVGQ 205 (660)
Q Consensus 200 v~eRGr 205 (660)
+.+.|.
T Consensus 150 ~~~~~~ 155 (182)
T cd03215 150 LADAGK 155 (182)
T ss_pred HHHCCC
Confidence 433343
No 127
>cd03235 ABC_Metallic_Cations ABC component of the metal-type transporters. This family includes transporters involved in the uptake of various metallic cations such as iron, manganese, and zinc. The ATPases of this group of transporters are very similar to members of iron-siderophore uptake family suggesting that they share a common ancestor. The best characterized metal-type ABC transporters are the YfeABCD system of Y. pestis, the SitABCD system of Salmonella enterica serovar Typhimurium, and the SitABCD transporter of Shigella flexneri. Moreover other uncharacterized homologs of these metal-type transporters are mainly found in pathogens like Haemophilus or enteroinvasive E. coli isolates.
Probab=99.39 E-value=3.5e-13 Score=134.48 Aligned_cols=136 Identities=15% Similarity=0.145 Sum_probs=101.7
Q ss_pred eeeeecCceEEEEecceeeccCCcceEEEEECCCCCcHHHHHHHHHHhC-CCceEEEecCcccc--cccccccCCCCCCC
Q 006117 42 TLSFEKGFFIVIRACQLLAQKNHGIILVGVAGPSGAGKTVFTEKVLNFM-PSIAVITMDNYNDS--SRIIDGNFDDPRLT 118 (660)
Q Consensus 42 ~ls~~~g~~~vL~~Isl~i~~ge~~~IIGI~GpSGSGKSTLak~L~~lL-p~~g~I~lDg~~~~--~~~i~~vfq~p~l~ 118 (660)
++++.++...++++++|.+++|+ ++||+|+||||||||+++|++++ |+.|.|.++|.... .+.+++++|++.++
T Consensus 4 ~l~~~~~~~~~l~~isl~i~~Ge---~~~l~G~nGsGKSTLl~~l~G~~~p~~G~i~~~g~~~~~~~~~i~~v~q~~~~~ 80 (213)
T cd03235 4 DLTVSYGGHPVLEDVSFEVKPGE---FLAIVGPNGAGKSTLLKAILGLLKPTSGSIRVFGKPLEKERKRIGYVPQRRSID 80 (213)
T ss_pred cceeEECCEEeeecceeEEcCCC---EEEEECCCCCCHHHHHHHHcCCCCCCCCEEEECCccHHHHHhheEEeccccccc
Confidence 44555555679999999999999 99999999999999999999998 78999999986432 24578999988763
Q ss_pred c--hhhHHHHHHhhhc--C-------c----c-------ccc-ccccccccccccceeeecCCccEEEEecceeeccccc
Q 006117 119 D--YDTLLENIRGLKE--G-------K----A-------VQV-PIYDFKSSSRIGYRTLEVPSSRIVIIEGIYALSEKLR 175 (660)
Q Consensus 119 d--~~tl~e~L~~L~~--G-------k----~-------I~~-PiyD~s~~~rs~~~~~~v~~a~VVIVEGilaL~deLr 175 (660)
. ..++.+++..... . . . ... +..+...+..++++.+++..++.++.++.+++.||+.
T Consensus 81 ~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgG~~qrv~la~al~~~p~llllDEPt 160 (213)
T cd03235 81 RDFPISVRDVVLMGLYGHKGLFRRLSKADKAKVDEALERVGLSELADRQIGELSGGQQQRVLLARALVQDPDLLLLDEPF 160 (213)
T ss_pred cCCCCcHHHHHHhccccccccccCCCHHHHHHHHHHHHHcCCHHHHhCCcccCCHHHHHHHHHHHHHHcCCCEEEEeCCc
Confidence 2 2688888754211 0 0 0 000 1122233455667777888888899999999999999
Q ss_pred CCCCE
Q 006117 176 PLIDL 180 (660)
Q Consensus 176 ~llDl 180 (660)
..+|.
T Consensus 161 ~~LD~ 165 (213)
T cd03235 161 AGVDP 165 (213)
T ss_pred ccCCH
Confidence 99997
No 128
>cd03233 ABC_PDR_domain1 The pleiotropic drug resistance (PDR) family of ATP-binding cassette (ABC) transporters. PDR is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. This PDR subfamily represents domain I of its (ABC-IM)2 organization. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds including sugars, ions, peptides, and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.39 E-value=6.3e-13 Score=132.37 Aligned_cols=124 Identities=11% Similarity=-0.020 Sum_probs=100.1
Q ss_pred CceEEEEecceeeccCCcceEEEEECCCCCcHHHHHHHHHHhC----CCceEEEecCcccc------cccccccCCCCCC
Q 006117 48 GFFIVIRACQLLAQKNHGIILVGVAGPSGAGKTVFTEKVLNFM----PSIAVITMDNYNDS------SRIIDGNFDDPRL 117 (660)
Q Consensus 48 g~~~vL~~Isl~i~~ge~~~IIGI~GpSGSGKSTLak~L~~lL----p~~g~I~lDg~~~~------~~~i~~vfq~p~l 117 (660)
+...++++++|.+++|+ +++|+|+||||||||+++|++.+ |..|.|.++|.... .+.+++++|++.+
T Consensus 18 ~~~~il~~~s~~i~~Ge---~~~i~G~nGsGKSTLl~~l~G~~~~~~~~~G~i~i~g~~~~~~~~~~~~~i~~~~q~~~~ 94 (202)
T cd03233 18 SKIPILKDFSGVVKPGE---MVLVLGRPGSGCSTLLKALANRTEGNVSVEGDIHYNGIPYKEFAEKYPGEIIYVSEEDVH 94 (202)
T ss_pred CCceeeeeEEEEECCCc---EEEEECCCCCCHHHHHHHhcccCCCCCCcceEEEECCEECccchhhhcceEEEEeccccc
Confidence 46689999999999999 99999999999999999999997 36899999997432 2357889999988
Q ss_pred CchhhHHHHHHhhhcCcccccccccccccccccceeeecCCccEEEEecceeecccccCCCCE
Q 006117 118 TDYDTLLENIRGLKEGKAVQVPIYDFKSSSRIGYRTLEVPSSRIVIIEGIYALSEKLRPLIDL 180 (660)
Q Consensus 118 ~d~~tl~e~L~~L~~Gk~I~~PiyD~s~~~rs~~~~~~v~~a~VVIVEGilaL~deLr~llDl 180 (660)
++..++.+++....... .+......++++.+++..+..++.++.+++.||+...+|.
T Consensus 95 ~~~~tv~~~l~~~~~~~------~~~~~~~LS~Ge~qrl~laral~~~p~llllDEPt~~LD~ 151 (202)
T cd03233 95 FPTLTVRETLDFALRCK------GNEFVRGISGGERKRVSIAEALVSRASVLCWDNSTRGLDS 151 (202)
T ss_pred CCCCcHHHHHhhhhhhc------cccchhhCCHHHHHHHHHHHHHhhCCCEEEEcCCCccCCH
Confidence 88889999986532111 2223334556677778888889999999999999999996
No 129
>COG1123 ATPase components of various ABC-type transport systems, contain duplicated ATPase [General function prediction only]
Probab=99.39 E-value=4e-13 Score=150.65 Aligned_cols=145 Identities=19% Similarity=0.261 Sum_probs=115.3
Q ss_pred ceeeeeccceeeee-------cCceEEEEecceeeccCCcceEEEEECCCCCcHHHHHHHHHHhC-CCceEEEecCccc-
Q 006117 33 RYEIVPIEDTLSFE-------KGFFIVIRACQLLAQKNHGIILVGVAGPSGAGKTVFTEKVLNFM-PSIAVITMDNYND- 103 (660)
Q Consensus 33 ~~ei~~~~~~ls~~-------~g~~~vL~~Isl~i~~ge~~~IIGI~GpSGSGKSTLak~L~~lL-p~~g~I~lDg~~~- 103 (660)
+.++..+.+.|... .+...++++|||.+.+|+ ++||+|.|||||||++++|++++ |+.|.|.++|...
T Consensus 280 ll~V~~l~k~y~~~~~~~~~~~~~~~Av~~VSf~l~~GE---~lglVGeSGsGKSTlar~i~gL~~P~~G~i~~~g~~~~ 356 (539)
T COG1123 280 LLSVRNLSKRYGSRKGLFVRERGEVKAVDDVSFDLREGE---TLGLVGESGSGKSTLARILAGLLPPSSGSIIFDGQDLD 356 (539)
T ss_pred eeEeeeeeeeeccccccccccccceeeeeeeeeEecCCC---EEEEECCCCCCHHHHHHHHhCCCCCCCceEEEeCcccc
Confidence 44555666666532 245689999999999999 99999999999999999999999 8999999998641
Q ss_pred --------ccccccccCCCCC--CCchhhHHHHHHhhhc---C--------------cccccc--cccccccccccceee
Q 006117 104 --------SSRIIDGNFDDPR--LTDYDTLLENIRGLKE---G--------------KAVQVP--IYDFKSSSRIGYRTL 154 (660)
Q Consensus 104 --------~~~~i~~vfq~p~--l~d~~tl~e~L~~L~~---G--------------k~I~~P--iyD~s~~~rs~~~~~ 154 (660)
..+.+.++||+|. +.+..++.+.+..-.. + +.+..| ..+...|+.++++.+
T Consensus 357 ~~~~~~~~~r~~~QmvFQdp~~SLnPr~tV~~~i~epL~~~~~~~~~~~~~rv~~ll~~VgL~~~~l~ryP~elSGGQrQ 436 (539)
T COG1123 357 LTGGELRRLRRRIQMVFQDPYSSLNPRMTVGDILAEPLRIHGGGSGAERRARVAELLELVGLPPEFLDRYPHELSGGQRQ 436 (539)
T ss_pred cccchhhhhhhheEEEEeCcccccCccccHHHHHHhHHhhhcccchHHHHHHHHHHHHHcCCCHHHHhcCchhcCcchhH
Confidence 1135678999984 6788888888754211 0 012222 477788899999999
Q ss_pred ecCCccEEEEecceeecccccCCCCE
Q 006117 155 EVPSSRIVIIEGIYALSEKLRPLIDL 180 (660)
Q Consensus 155 ~v~~a~VVIVEGilaL~deLr~llDl 180 (660)
+++.+++++.++-+++.||+...+|.
T Consensus 437 RvaIARALa~~P~lli~DEp~SaLDv 462 (539)
T COG1123 437 RVAIARALALEPKLLILDEPVSALDV 462 (539)
T ss_pred HHHHHHHHhcCCCEEEecCCccccCH
Confidence 99999999999999999999999997
No 130
>PRK14242 phosphate transporter ATP-binding protein; Provisional
Probab=99.39 E-value=5.4e-13 Score=136.63 Aligned_cols=136 Identities=21% Similarity=0.220 Sum_probs=102.5
Q ss_pred ceeeeecCceEEEEecceeeccCCcceEEEEECCCCCcHHHHHHHHHHhC------CCceEEEecCcccc---------c
Q 006117 41 DTLSFEKGFFIVIRACQLLAQKNHGIILVGVAGPSGAGKTVFTEKVLNFM------PSIAVITMDNYNDS---------S 105 (660)
Q Consensus 41 ~~ls~~~g~~~vL~~Isl~i~~ge~~~IIGI~GpSGSGKSTLak~L~~lL------p~~g~I~lDg~~~~---------~ 105 (660)
+++++.++...++++++|.+++|+ ++||+|+||||||||+++|+++. |+.|.|.++|.... .
T Consensus 10 ~~l~~~~~~~~il~~is~~i~~Ge---~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~i~~~g~~i~~~~~~~~~~~ 86 (253)
T PRK14242 10 RGLSFFYGDFQALHDISLEFEQNQ---VTALIGPSGCGKSTFLRCLNRMNDLIPGARVEGEILLDGENIYDPHVDVVELR 86 (253)
T ss_pred eeeEEEECCeeeecceeEEEeCCC---EEEEECCCCCCHHHHHHHHHhhcccCCCCCCceEEEECCEEccccccCHHHHh
Confidence 444555556679999999999999 99999999999999999999985 36899999996532 1
Q ss_pred ccccccCCCCCCCchhhHHHHHHhhh--cCc--------c-------ccc-----ccccccccccccceeeecCCccEEE
Q 006117 106 RIIDGNFDDPRLTDYDTLLENIRGLK--EGK--------A-------VQV-----PIYDFKSSSRIGYRTLEVPSSRIVI 163 (660)
Q Consensus 106 ~~i~~vfq~p~l~d~~tl~e~L~~L~--~Gk--------~-------I~~-----PiyD~s~~~rs~~~~~~v~~a~VVI 163 (660)
+.+++++|++.+++ .++.+++.... .+. . ... ...+......++++.+++..++.++
T Consensus 87 ~~i~~v~q~~~~~~-~tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~LSgGq~qrv~laral~ 165 (253)
T PRK14242 87 RRVGMVFQKPNPFP-KSIFENVAYGLRVNGVKDKAYLAERVERSLRHAALWDEVKDRLHESALGLSGGQQQRLCIARALA 165 (253)
T ss_pred hcEEEEecCCCCCc-CcHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHcCCchhhhHHhhCCcccCCHHHHHHHHHHHHHh
Confidence 35789999998887 48888885421 110 0 000 0112233455667788888888999
Q ss_pred EecceeecccccCCCCE
Q 006117 164 IEGIYALSEKLRPLIDL 180 (660)
Q Consensus 164 VEGilaL~deLr~llDl 180 (660)
.++.+++.||+...+|.
T Consensus 166 ~~p~llllDEPt~~LD~ 182 (253)
T PRK14242 166 VEPEVLLMDEPASALDP 182 (253)
T ss_pred cCCCEEEEeCCcccCCH
Confidence 99999999999999997
No 131
>PRK13651 cobalt transporter ATP-binding subunit; Provisional
Probab=99.39 E-value=3.1e-13 Score=143.35 Aligned_cols=147 Identities=15% Similarity=0.182 Sum_probs=107.6
Q ss_pred EEEEecceeeccCCcceEEEEECCCCCcHHHHHHHHHHhC-CCceEEEecCccc--------------------------
Q 006117 51 IVIRACQLLAQKNHGIILVGVAGPSGAGKTVFTEKVLNFM-PSIAVITMDNYND-------------------------- 103 (660)
Q Consensus 51 ~vL~~Isl~i~~ge~~~IIGI~GpSGSGKSTLak~L~~lL-p~~g~I~lDg~~~-------------------------- 103 (660)
.++++++|.+.+|+ +++|+|+||||||||+++|++++ |+.|.|.+++...
T Consensus 21 ~~l~~vsl~i~~Ge---~v~iiG~nGsGKSTLl~~L~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 97 (305)
T PRK13651 21 KALDNVSVEINQGE---FIAIIGQTGSGKTTFIEHLNALLLPDTGTIEWIFKDEKNKKKTKEKEKVLEKLVIQKTRFKKI 97 (305)
T ss_pred cceeeeEEEEeCCC---EEEEECCCCCcHHHHHHHHhCCCCCCCcEEEEeceeccccccccccccccccccccccccccc
Confidence 59999999999999 99999999999999999999998 7899999986532
Q ss_pred -----ccccccccCCCCC-CCchhhHHHHHHhhhc--Cc--------------cccc--ccccccccccccceeeecCCc
Q 006117 104 -----SSRIIDGNFDDPR-LTDYDTLLENIRGLKE--GK--------------AVQV--PIYDFKSSSRIGYRTLEVPSS 159 (660)
Q Consensus 104 -----~~~~i~~vfq~p~-l~d~~tl~e~L~~L~~--Gk--------------~I~~--PiyD~s~~~rs~~~~~~v~~a 159 (660)
..+.++++||+|. .+...++.+++..... +. .+.. ...+......++++.+++..+
T Consensus 98 ~~~~~~~~~ig~v~Q~~~~~l~~~tv~e~i~~~~~~~~~~~~~~~~~~~~~l~~~gL~~~~~~~~~~~LSgGqkqrvalA 177 (305)
T PRK13651 98 KKIKEIRRRVGVVFQFAEYQLFEQTIEKDIIFGPVSMGVSKEEAKKRAAKYIELVGLDESYLQRSPFELSGGQKRRVALA 177 (305)
T ss_pred chHHHHHhceEEEeeCcccccccccHHHHHHhhHHHcCCCHHHHHHHHHHHHHHcCCChhhhhCChhhCCHHHHHHHHHH
Confidence 0134789999873 3334688888853211 10 0111 123444555667788888999
Q ss_pred cEEEEecceeecccccCCCCEEEEEEcChhHHHHHHHHHHHHHhCCCH
Q 006117 160 RIVIIEGIYALSEKLRPLIDLRVSVTGGVHFDLVKRVFRDIQRVGQEP 207 (660)
Q Consensus 160 ~VVIVEGilaL~deLr~llDlkIfVdad~dirLiRRI~RDv~eRGrs~ 207 (660)
.+++.++.+++.||+...+|. .....+..+.+.+.+.|.+.
T Consensus 178 ~aL~~~P~lLlLDEPt~~LD~-------~~~~~l~~~l~~l~~~g~ti 218 (305)
T PRK13651 178 GILAMEPDFLVFDEPTAGLDP-------QGVKEILEIFDNLNKQGKTI 218 (305)
T ss_pred HHHHhCCCEEEEeCCCCCCCH-------HHHHHHHHHHHHHHHCCCEE
Confidence 999999999999999999997 34444555555555445554
No 132
>cd03231 ABC_CcmA_heme_exporter CcmA, the ATP-binding component of the bacterial CcmAB transporter. The CCM family is involved in bacterial cytochrome c biogenesis. Cytochrome c maturation in E. coli requires the ccm operon, which encodes eight membrane proteins (CcmABCDEFGH). CcmE is a periplasmic heme chaperone that binds heme covalently and transfers it onto apocytochrome c in the presence of CcmF, CcmG, and CcmH. The CcmAB proteins represent an ABC transporter and the CcmCD proteins participate in heme transfer to CcmE.
Probab=99.39 E-value=6e-13 Score=132.19 Aligned_cols=137 Identities=16% Similarity=0.160 Sum_probs=104.6
Q ss_pred ceeeeecCceEEEEecceeeccCCcceEEEEECCCCCcHHHHHHHHHHhC-CCceEEEecCcccc------cccccccCC
Q 006117 41 DTLSFEKGFFIVIRACQLLAQKNHGIILVGVAGPSGAGKTVFTEKVLNFM-PSIAVITMDNYNDS------SRIIDGNFD 113 (660)
Q Consensus 41 ~~ls~~~g~~~vL~~Isl~i~~ge~~~IIGI~GpSGSGKSTLak~L~~lL-p~~g~I~lDg~~~~------~~~i~~vfq 113 (660)
+++++.++...++++++|.+++|+ ++||+|+||||||||+++|++.+ |..|.|.++|.... .+.+++++|
T Consensus 4 ~~l~~~~~~~~~l~~isl~i~~Ge---~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~i~~~~q 80 (201)
T cd03231 4 DELTCERDGRALFSGLSFTLAAGE---ALQVTGPNGSGKTTLLRILAGLSPPLAGRVLLNGGPLDFQRDSIARGLLYLGH 80 (201)
T ss_pred EEEEEEeCCceeeccceEEEcCCC---EEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEecccccHHhhhheEEecc
Confidence 445556666789999999999999 99999999999999999999998 78999999986432 135778899
Q ss_pred CCCCCchhhHHHHHHhhhcC---c-------ccccc-cccccccccccceeeecCCccEEEEecceeecccccCCCCE
Q 006117 114 DPRLTDYDTLLENIRGLKEG---K-------AVQVP-IYDFKSSSRIGYRTLEVPSSRIVIIEGIYALSEKLRPLIDL 180 (660)
Q Consensus 114 ~p~l~d~~tl~e~L~~L~~G---k-------~I~~P-iyD~s~~~rs~~~~~~v~~a~VVIVEGilaL~deLr~llDl 180 (660)
++.+++..++.+++...... . ....+ ..+...+..++++.+++..++.++.++.+++.||+...+|.
T Consensus 81 ~~~~~~~~tv~e~l~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrl~laral~~~p~llllDEPt~~LD~ 158 (201)
T cd03231 81 APGIKTTLSVLENLRFWHADHSDEQVEEALARVGLNGFEDRPVAQLSAGQQRRVALARLLLSGRPLWILDEPTTALDK 158 (201)
T ss_pred ccccCCCcCHHHHHHhhcccccHHHHHHHHHHcCChhhhcCchhhCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCH
Confidence 88888778888887643211 0 01111 11222334556677778888899999999999999999997
No 133
>PRK14272 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.39 E-value=6.7e-13 Score=135.69 Aligned_cols=140 Identities=16% Similarity=0.200 Sum_probs=105.9
Q ss_pred eccceeeeecCceEEEEecceeeccCCcceEEEEECCCCCcHHHHHHHHHHhC-CC-----ceEEEecCcccc-------
Q 006117 38 PIEDTLSFEKGFFIVIRACQLLAQKNHGIILVGVAGPSGAGKTVFTEKVLNFM-PS-----IAVITMDNYNDS------- 104 (660)
Q Consensus 38 ~~~~~ls~~~g~~~vL~~Isl~i~~ge~~~IIGI~GpSGSGKSTLak~L~~lL-p~-----~g~I~lDg~~~~------- 104 (660)
...+++++.++...++++++|.+++|+ ++||+|+||||||||+++|++.+ |. .|.|.++|....
T Consensus 5 l~~~~l~~~~~~~~~l~~vs~~i~~Ge---~~~i~G~nGsGKSTLl~~i~G~~~~~~~~~~~G~i~~~g~~~~~~~~~~~ 81 (252)
T PRK14272 5 LSAQDVNIYYGDKQAVKNVNLDVQRGT---VNALIGPSGCGKTTFLRAINRMHDLTPGARVTGRILLDGQDIYGPRVDPV 81 (252)
T ss_pred EEEeeeEEEECCEEeeccceEEEcCCC---EEEEECCCCCCHHHHHHHHhccCCCCcCCCCceeEEECCEEcccCccCHH
Confidence 344566666666789999999999999 99999999999999999999997 43 799999986532
Q ss_pred --cccccccCCCCCCCchhhHHHHHHhhhc--C---cc-----cc-----c-------ccccccccccccceeeecCCcc
Q 006117 105 --SRIIDGNFDDPRLTDYDTLLENIRGLKE--G---KA-----VQ-----V-------PIYDFKSSSRIGYRTLEVPSSR 160 (660)
Q Consensus 105 --~~~i~~vfq~p~l~d~~tl~e~L~~L~~--G---k~-----I~-----~-------PiyD~s~~~rs~~~~~~v~~a~ 160 (660)
...++++||++.+++..++.+++..... + .. +. . ...+...+..++++..++..++
T Consensus 82 ~~~~~i~~~~q~~~~~~~~t~~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~l~~~~~~~~~~LS~G~~qrv~lar 161 (252)
T PRK14272 82 AMRRRVGMVFQKPNPFPTMSVFDNVVAGLKLAGIRDRDHLMEVAERSLRGAALWDEVKDRLKTPATGLSGGQQQRLCIAR 161 (252)
T ss_pred HhhceeEEEeccCccCcCCCHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHcCcchhhhhhhcCCcccCCHHHHHHHHHHH
Confidence 1347899999998888888888863211 1 00 00 0 0122233445567777888888
Q ss_pred EEEEecceeecccccCCCCE
Q 006117 161 IVIIEGIYALSEKLRPLIDL 180 (660)
Q Consensus 161 VVIVEGilaL~deLr~llDl 180 (660)
.++.++.+++.||+...+|.
T Consensus 162 al~~~p~llllDEP~~~LD~ 181 (252)
T PRK14272 162 ALAVEPEILLMDEPTSALDP 181 (252)
T ss_pred HHhcCCCEEEEeCCCccCCH
Confidence 99999999999999999997
No 134
>PRK11144 modC molybdate transporter ATP-binding protein; Provisional
Probab=99.38 E-value=5.5e-13 Score=144.01 Aligned_cols=134 Identities=21% Similarity=0.224 Sum_probs=103.8
Q ss_pred eeeeecCceEEEEecceeeccCCcceEEEEECCCCCcHHHHHHHHHHhC-CCceEEEecCcccc-----------ccccc
Q 006117 42 TLSFEKGFFIVIRACQLLAQKNHGIILVGVAGPSGAGKTVFTEKVLNFM-PSIAVITMDNYNDS-----------SRIID 109 (660)
Q Consensus 42 ~ls~~~g~~~vL~~Isl~i~~ge~~~IIGI~GpSGSGKSTLak~L~~lL-p~~g~I~lDg~~~~-----------~~~i~ 109 (660)
++++.++.+. + +++|.+++|+ +++|+||||||||||+++|++++ |+.|.|.++|.... .+.++
T Consensus 5 ~l~k~~~~~~-~-~vsl~i~~Ge---~~~l~G~nGsGKSTLl~~iaGl~~p~~G~I~~~g~~~~~~~~~~~~~~~~~~i~ 79 (352)
T PRK11144 5 NFKQQLGDLC-L-TVNLTLPAQG---ITAIFGRSGAGKTSLINAISGLTRPQKGRIVLNGRVLFDAEKGICLPPEKRRIG 79 (352)
T ss_pred EEEEEeCCEE-E-EEEEEEcCCC---EEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEEccccccccccchhhCCEE
Confidence 3444445543 3 8999999999 99999999999999999999998 78999999985421 24578
Q ss_pred ccCCCCCCCchhhHHHHHHhhhcC---c-------cccc-ccccccccccccceeeecCCccEEEEecceeecccccCCC
Q 006117 110 GNFDDPRLTDYDTLLENIRGLKEG---K-------AVQV-PIYDFKSSSRIGYRTLEVPSSRIVIIEGIYALSEKLRPLI 178 (660)
Q Consensus 110 ~vfq~p~l~d~~tl~e~L~~L~~G---k-------~I~~-PiyD~s~~~rs~~~~~~v~~a~VVIVEGilaL~deLr~ll 178 (660)
++||++.+|+..++.+++...... . .+.. +..+...+..++++.+++..++.++.++.+++.||+...+
T Consensus 80 ~v~q~~~l~~~~tv~enl~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~LSgGq~qRvalaraL~~~p~llLLDEPts~L 159 (352)
T PRK11144 80 YVFQDARLFPHYKVRGNLRYGMAKSMVAQFDKIVALLGIEPLLDRYPGSLSGGEKQRVAIGRALLTAPELLLMDEPLASL 159 (352)
T ss_pred EEcCCcccCCCCcHHHHHHhhhhhhhHHHHHHHHHHcCCchhhhCCcccCCHHHHHHHHHHHHHHcCCCEEEEcCCcccC
Confidence 999999999999999998642111 0 0111 2234445566778888899999999999999999999999
Q ss_pred CE
Q 006117 179 DL 180 (660)
Q Consensus 179 Dl 180 (660)
|.
T Consensus 160 D~ 161 (352)
T PRK11144 160 DL 161 (352)
T ss_pred CH
Confidence 97
No 135
>PRK15439 autoinducer 2 ABC transporter ATP-binding protein LsrA; Provisional
Probab=99.38 E-value=5.2e-13 Score=150.57 Aligned_cols=159 Identities=13% Similarity=0.059 Sum_probs=119.5
Q ss_pred ccceeeeecCceEEEEecceeeccCCcceEEEEECCCCCcHHHHHHHHHHhC-CCceEEEecCccccc--------cccc
Q 006117 39 IEDTLSFEKGFFIVIRACQLLAQKNHGIILVGVAGPSGAGKTVFTEKVLNFM-PSIAVITMDNYNDSS--------RIID 109 (660)
Q Consensus 39 ~~~~ls~~~g~~~vL~~Isl~i~~ge~~~IIGI~GpSGSGKSTLak~L~~lL-p~~g~I~lDg~~~~~--------~~i~ 109 (660)
..+++++.++...++++++|.+++|+ ++||+||||||||||+++|++++ |..|.|.++|..... ..++
T Consensus 13 ~~~~l~~~~~~~~il~~vsl~i~~Ge---~~~liG~NGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~~i~ 89 (510)
T PRK15439 13 CARSISKQYSGVEVLKGIDFTLHAGE---VHALLGGNGAGKSTLMKIIAGIVPPDSGTLEIGGNPCARLTPAKAHQLGIY 89 (510)
T ss_pred EEEeEEEEeCCceeeeeeEEEEcCCC---EEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEECCCCCHHHHHhCCEE
Confidence 34566666677789999999999999 99999999999999999999998 789999999864321 2478
Q ss_pred ccCCCCCCCchhhHHHHHHhhhcC-c-----------ccccc-cccccccccccceeeecCCccEEEEecceeecccccC
Q 006117 110 GNFDDPRLTDYDTLLENIRGLKEG-K-----------AVQVP-IYDFKSSSRIGYRTLEVPSSRIVIIEGIYALSEKLRP 176 (660)
Q Consensus 110 ~vfq~p~l~d~~tl~e~L~~L~~G-k-----------~I~~P-iyD~s~~~rs~~~~~~v~~a~VVIVEGilaL~deLr~ 176 (660)
+++|++.+++..++.+++...... . .+... ..+...+..++++.+++..+..++.++.+++.||+..
T Consensus 90 ~v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgG~~qrv~la~aL~~~p~lllLDEPt~ 169 (510)
T PRK15439 90 LVPQEPLLFPNLSVKENILFGLPKRQASMQKMKQLLAALGCQLDLDSSAGSLEVADRQIVEILRGLMRDSRILILDEPTA 169 (510)
T ss_pred EEeccCccCCCCcHHHHhhcccccchHHHHHHHHHHHHcCCCccccCChhhCCHHHHHHHHHHHHHHcCCCEEEEECCCC
Confidence 999999999888999987642110 0 01111 2234445567778888899999999999999999999
Q ss_pred CCCEEEEEEcChhHHHHHHHHHHHHHhCCCH
Q 006117 177 LIDLRVSVTGGVHFDLVKRVFRDIQRVGQEP 207 (660)
Q Consensus 177 llDlkIfVdad~dirLiRRI~RDv~eRGrs~ 207 (660)
.+|. .....+..+.+++.+.|.+.
T Consensus 170 ~LD~-------~~~~~l~~~l~~~~~~g~ti 193 (510)
T PRK15439 170 SLTP-------AETERLFSRIRELLAQGVGI 193 (510)
T ss_pred CCCH-------HHHHHHHHHHHHHHHCCCEE
Confidence 9997 34444555555555555543
No 136
>TIGR01978 sufC FeS assembly ATPase SufC. SufC is part of the SUF system, shown in E. coli to consist of six proteins and believed to act in Fe-S cluster formation during oxidative stress. SufC forms a complex with SufB and SufD. SufC belongs to the ATP-binding cassette transporter family (pfam00005) but is no longer thought to be part of a transporter. The complex is reported as cytosolic (PubMed:12554644) or associated with the membrane (PubMed:11943156). The SUF system also includes a cysteine desulfurase (SufS, enhanced by SufE) and a probable iron-sulfur cluster assembly scaffold protein, SufA.
Probab=99.38 E-value=6.3e-13 Score=134.87 Aligned_cols=156 Identities=12% Similarity=0.154 Sum_probs=111.0
Q ss_pred ceeeeecCceEEEEecceeeccCCcceEEEEECCCCCcHHHHHHHHHHhC---CCceEEEecCccccc--------cccc
Q 006117 41 DTLSFEKGFFIVIRACQLLAQKNHGIILVGVAGPSGAGKTVFTEKVLNFM---PSIAVITMDNYNDSS--------RIID 109 (660)
Q Consensus 41 ~~ls~~~g~~~vL~~Isl~i~~ge~~~IIGI~GpSGSGKSTLak~L~~lL---p~~g~I~lDg~~~~~--------~~i~ 109 (660)
+++++.++...++++++|.+++|+ +++|+|+||||||||+++|++++ |..|.|.++|..... ..++
T Consensus 4 ~~l~~~~~~~~~l~~isl~i~~Ge---~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~G~i~~~g~~~~~~~~~~~~~~~i~ 80 (243)
T TIGR01978 4 KDLHVSVEDKEILKGVNLTVKKGE---IHAIMGPNGSGKSTLSKTIAGHPSYEVTSGTILFKGQDLLELEPDERARAGLF 80 (243)
T ss_pred eeEEEEECCEEEEeccceEEcCCC---EEEEECCCCCCHHHHHHHHhCCCCCCCCcceEEECCEecCCCCHHHhhccceE
Confidence 455566666789999999999999 99999999999999999999993 689999999964321 2267
Q ss_pred ccCCCCCCCchhhHHHHHHhhhcC------------c----c-------cccc--ccccccc-ccccceeeecCCccEEE
Q 006117 110 GNFDDPRLTDYDTLLENIRGLKEG------------K----A-------VQVP--IYDFKSS-SRIGYRTLEVPSSRIVI 163 (660)
Q Consensus 110 ~vfq~p~l~d~~tl~e~L~~L~~G------------k----~-------I~~P--iyD~s~~-~rs~~~~~~v~~a~VVI 163 (660)
+++|++.+++..++.+++...... . . ...+ ..+.... ..++++.+++..+..++
T Consensus 81 ~v~q~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~LS~G~~qrl~la~al~ 160 (243)
T TIGR01978 81 LAFQYPEEIPGVSNLEFLRSALNARRSARGEEPLDLLDFLKLLKAKLALLGMDEEFLNRSVNEGFSGGEKKRNEILQMAL 160 (243)
T ss_pred eeeccccccCCcCHHHHHHHHHHHhhcccccccccHHHHHHHHHHHHHHcCCchhhcccccccCcCHHHHHHHHHHHHHh
Confidence 889999988887888776432110 0 0 0111 1122232 25567777888888899
Q ss_pred EecceeecccccCCCCEEEEEEcChhHHHHHHHHHHHHHhCCC
Q 006117 164 IEGIYALSEKLRPLIDLRVSVTGGVHFDLVKRVFRDIQRVGQE 206 (660)
Q Consensus 164 VEGilaL~deLr~llDlkIfVdad~dirLiRRI~RDv~eRGrs 206 (660)
.++.+++.||+...+|. .....+.++.+.+.+.|.+
T Consensus 161 ~~p~llllDEPt~~LD~-------~~~~~l~~~l~~~~~~~~t 196 (243)
T TIGR01978 161 LEPKLAILDEIDSGLDI-------DALKIVAEGINRLREPDRS 196 (243)
T ss_pred cCCCEEEecCCcccCCH-------HHHHHHHHHHHHHHHCCcE
Confidence 99999999999999997 3333444444554444443
No 137
>PRK11300 livG leucine/isoleucine/valine transporter ATP-binding subunit; Provisional
Probab=99.38 E-value=8.5e-13 Score=135.17 Aligned_cols=157 Identities=15% Similarity=0.186 Sum_probs=113.1
Q ss_pred cceeeeecCceEEEEecceeeccCCcceEEEEECCCCCcHHHHHHHHHHhC-CCceEEEecCccccc--------ccccc
Q 006117 40 EDTLSFEKGFFIVIRACQLLAQKNHGIILVGVAGPSGAGKTVFTEKVLNFM-PSIAVITMDNYNDSS--------RIIDG 110 (660)
Q Consensus 40 ~~~ls~~~g~~~vL~~Isl~i~~ge~~~IIGI~GpSGSGKSTLak~L~~lL-p~~g~I~lDg~~~~~--------~~i~~ 110 (660)
.+++++.++...++++++|.+++|+ +++|+|+||||||||+++|++++ |..|.|.++|..... ..+++
T Consensus 8 ~~~l~~~~~~~~~l~~is~~i~~Ge---~~~l~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~~~~i~~ 84 (255)
T PRK11300 8 VSGLMMRFGGLLAVNNVNLEVREQE---IVSLIGPNGAGKTTVFNCLTGFYKPTGGTILLRGQHIEGLPGHQIARMGVVR 84 (255)
T ss_pred EeeEEEEECCEEEEEeeeeEEcCCe---EEEEECCCCCCHHHHHHHHhCCcCCCcceEEECCEECCCCCHHHHHhcCeEE
Confidence 3555555566789999999999999 99999999999999999999998 789999999975321 23567
Q ss_pred cCCCCCCCchhhHHHHHHhhhc---------C---------------cc-------ccc-ccccccccccccceeeecCC
Q 006117 111 NFDDPRLTDYDTLLENIRGLKE---------G---------------KA-------VQV-PIYDFKSSSRIGYRTLEVPS 158 (660)
Q Consensus 111 vfq~p~l~d~~tl~e~L~~L~~---------G---------------k~-------I~~-PiyD~s~~~rs~~~~~~v~~ 158 (660)
+||++.+++..++.+++..... + .. ... +..+...+..++++.+++..
T Consensus 85 ~~q~~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~LS~G~~qrv~l 164 (255)
T PRK11300 85 TFQHVRLFREMTVIENLLVAQHQQLKTGLFSGLLKTPAFRRAESEALDRAATWLERVGLLEHANRQAGNLAYGQQRRLEI 164 (255)
T ss_pred eccCcccCCCCcHHHHHHHhhhccccchhhhhhccccccccchhHHHHHHHHHHHhCChhhhhhCChhhCCHHHHHHHHH
Confidence 8999999988899998764210 0 00 000 11122233455667778888
Q ss_pred ccEEEEecceeecccccCCCCEEEEEEcChhHHHHHHHHHHHHHh-CCC
Q 006117 159 SRIVIIEGIYALSEKLRPLIDLRVSVTGGVHFDLVKRVFRDIQRV-GQE 206 (660)
Q Consensus 159 a~VVIVEGilaL~deLr~llDlkIfVdad~dirLiRRI~RDv~eR-Grs 206 (660)
+..++.++.+++.||+...+|. ...+.+..+.++..+. |.+
T Consensus 165 a~al~~~p~llllDEPt~~LD~-------~~~~~l~~~L~~~~~~~~~t 206 (255)
T PRK11300 165 ARCMVTQPEILMLDEPAAGLNP-------KETKELDELIAELRNEHNVT 206 (255)
T ss_pred HHHHhcCCCEEEEcCCccCCCH-------HHHHHHHHHHHHHHhhcCCE
Confidence 8899999999999999999997 3344444444444332 444
No 138
>PRK13634 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=99.38 E-value=4.8e-13 Score=140.56 Aligned_cols=147 Identities=14% Similarity=0.183 Sum_probs=108.6
Q ss_pred eEEEEecceeeccCCcceEEEEECCCCCcHHHHHHHHHHhC-CCceEEEecCcccc-----------cccccccCCCCC-
Q 006117 50 FIVIRACQLLAQKNHGIILVGVAGPSGAGKTVFTEKVLNFM-PSIAVITMDNYNDS-----------SRIIDGNFDDPR- 116 (660)
Q Consensus 50 ~~vL~~Isl~i~~ge~~~IIGI~GpSGSGKSTLak~L~~lL-p~~g~I~lDg~~~~-----------~~~i~~vfq~p~- 116 (660)
..+|++++|.+++|+ ++||+|+||||||||+++|++++ |+.|.|.+||.... .+.++++||+|.
T Consensus 20 ~~~L~~vsl~i~~Ge---~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~i~~~~~~~~~~~~~~~ig~v~q~~~~ 96 (290)
T PRK13634 20 RRALYDVNVSIPSGS---YVAIIGHTGSGKSTLLQHLNGLLQPTSGTVTIGERVITAGKKNKKLKPLRKKVGIVFQFPEH 96 (290)
T ss_pred ccceeeEEEEEcCCC---EEEEECCCCCcHHHHHHHHhcCCCCCCcEEEECCEECccccccchHHHHHhhEEEEeeCchh
Confidence 469999999999999 99999999999999999999998 78999999997542 134789999873
Q ss_pred -CCchhhHHHHHHhhhc--C--------------cccccc--cccccccccccceeeecCCccEEEEecceeecccccCC
Q 006117 117 -LTDYDTLLENIRGLKE--G--------------KAVQVP--IYDFKSSSRIGYRTLEVPSSRIVIIEGIYALSEKLRPL 177 (660)
Q Consensus 117 -l~d~~tl~e~L~~L~~--G--------------k~I~~P--iyD~s~~~rs~~~~~~v~~a~VVIVEGilaL~deLr~l 177 (660)
++ ..++.+++..... + +.+..+ ..+......++++.+++..++.++.++.+++.||+...
T Consensus 97 ~l~-~~tv~eni~~~~~~~~~~~~~~~~~~~~~l~~~gL~~~~~~~~~~~LSgGq~qrv~lAraL~~~P~llllDEPt~~ 175 (290)
T PRK13634 97 QLF-EETVEKDICFGPMNFGVSEEDAKQKAREMIELVGLPEELLARSPFELSGGQMRRVAIAGVLAMEPEVLVLDEPTAG 175 (290)
T ss_pred hhh-hhhHHHHHHHHHHHcCCCHHHHHHHHHHHHHHCCCChhhhhCCcccCCHHHHHHHHHHHHHHcCCCEEEEECCccc
Confidence 44 4688888753211 1 011121 12344455667788888889999999999999999999
Q ss_pred CCEEEEEEcChhHHHHHHHHHHHHH-hCCCH
Q 006117 178 IDLRVSVTGGVHFDLVKRVFRDIQR-VGQEP 207 (660)
Q Consensus 178 lDlkIfVdad~dirLiRRI~RDv~e-RGrs~ 207 (660)
+|. .....+.++.+++.. .|.++
T Consensus 176 LD~-------~~~~~l~~~L~~l~~~~g~tv 199 (290)
T PRK13634 176 LDP-------KGRKEMMEMFYKLHKEKGLTT 199 (290)
T ss_pred CCH-------HHHHHHHHHHHHHHHhcCCEE
Confidence 997 334445555555543 36554
No 139
>PRK14250 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.38 E-value=6.9e-13 Score=135.33 Aligned_cols=137 Identities=19% Similarity=0.226 Sum_probs=104.1
Q ss_pred cceeeeecCceEEEEecceeeccCCcceEEEEECCCCCcHHHHHHHHHHhC-CCceEEEecCcccc-------ccccccc
Q 006117 40 EDTLSFEKGFFIVIRACQLLAQKNHGIILVGVAGPSGAGKTVFTEKVLNFM-PSIAVITMDNYNDS-------SRIIDGN 111 (660)
Q Consensus 40 ~~~ls~~~g~~~vL~~Isl~i~~ge~~~IIGI~GpSGSGKSTLak~L~~lL-p~~g~I~lDg~~~~-------~~~i~~v 111 (660)
.+++++.++...++++++|.+.+|+ ++||+|+||||||||+++|++++ |..|.|.++|.... .+.++++
T Consensus 6 ~~~l~~~~~~~~~l~~vsl~i~~Ge---~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~i~~~~~~~~~~~i~~~ 82 (241)
T PRK14250 6 FKEVSYSSFGKEILKDISVKFEGGA---IYTIVGPSGAGKSTLIKLINRLIDPTEGSILIDGVDIKTIDVIDLRRKIGMV 82 (241)
T ss_pred EEeEEEEeCCeeeeeeeeEEEcCCC---EEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEEhhhcChHHhhhcEEEE
Confidence 3455555666779999999999999 99999999999999999999998 79999999986432 1357889
Q ss_pred CCCCCCCchhhHHHHHHhhh--cCc----------ccccc--cccccccccccceeeecCCccEEEEecceeecccccCC
Q 006117 112 FDDPRLTDYDTLLENIRGLK--EGK----------AVQVP--IYDFKSSSRIGYRTLEVPSSRIVIIEGIYALSEKLRPL 177 (660)
Q Consensus 112 fq~p~l~d~~tl~e~L~~L~--~Gk----------~I~~P--iyD~s~~~rs~~~~~~v~~a~VVIVEGilaL~deLr~l 177 (660)
||++.+++ .++.+++.... .+. ....+ ..+......++++.+++..+..++.++.+++.||+...
T Consensus 83 ~q~~~~~~-~tv~e~l~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LS~G~~qrl~la~al~~~p~llllDEPt~~ 161 (241)
T PRK14250 83 FQQPHLFE-GTVKDNIEYGPMLKGEKNVDVEYYLSIVGLNKEYATRDVKNLSGGEAQRVSIARTLANNPEVLLLDEPTSA 161 (241)
T ss_pred ecCchhch-hhHHHHHhcchhhcCcHHHHHHHHHHHcCCCHHHhhCCcccCCHHHHHHHHHHHHHhcCCCEEEEeCCccc
Confidence 99998886 58888875321 110 01111 12233344566777788888889999999999999999
Q ss_pred CCE
Q 006117 178 IDL 180 (660)
Q Consensus 178 lDl 180 (660)
+|.
T Consensus 162 LD~ 164 (241)
T PRK14250 162 LDP 164 (241)
T ss_pred CCH
Confidence 997
No 140
>PRK10247 putative ABC transporter ATP-binding protein YbbL; Provisional
Probab=99.38 E-value=6.7e-13 Score=134.07 Aligned_cols=136 Identities=15% Similarity=0.220 Sum_probs=102.5
Q ss_pred ceeeeecCceEEEEecceeeccCCcceEEEEECCCCCcHHHHHHHHHHhC-CCceEEEecCcccc-------cccccccC
Q 006117 41 DTLSFEKGFFIVIRACQLLAQKNHGIILVGVAGPSGAGKTVFTEKVLNFM-PSIAVITMDNYNDS-------SRIIDGNF 112 (660)
Q Consensus 41 ~~ls~~~g~~~vL~~Isl~i~~ge~~~IIGI~GpSGSGKSTLak~L~~lL-p~~g~I~lDg~~~~-------~~~i~~vf 112 (660)
+++++.++...++++++|.+++|+ +++|+|+||||||||+++|++++ |..|.|.+++.... ...++++|
T Consensus 11 ~~l~~~~~~~~il~~vs~~i~~Ge---~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~i~~~~ 87 (225)
T PRK10247 11 QNVGYLAGDAKILNNISFSLRAGE---FKLITGPSGCGKSTLLKIVASLISPTSGTLLFEGEDISTLKPEIYRQQVSYCA 87 (225)
T ss_pred eccEEeeCCceeeeccEEEEcCCC---EEEEECCCCCCHHHHHHHHhcccCCCCCeEEECCEEcCcCCHHHHHhccEEEe
Confidence 455555566679999999999999 99999999999999999999998 79999999986432 23578899
Q ss_pred CCCCCCchhhHHHHHHhhh--cCc------------ccccc--cccccccccccceeeecCCccEEEEecceeecccccC
Q 006117 113 DDPRLTDYDTLLENIRGLK--EGK------------AVQVP--IYDFKSSSRIGYRTLEVPSSRIVIIEGIYALSEKLRP 176 (660)
Q Consensus 113 q~p~l~d~~tl~e~L~~L~--~Gk------------~I~~P--iyD~s~~~rs~~~~~~v~~a~VVIVEGilaL~deLr~ 176 (660)
|++.+++ .++.+++.... .+. .+... ..+......++++..++..++.++.++.+++.||+..
T Consensus 88 q~~~l~~-~tv~enl~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LS~G~~qrv~laral~~~p~llllDEPt~ 166 (225)
T PRK10247 88 QTPTLFG-DTVYDNLIFPWQIRNQQPDPAIFLDDLERFALPDTILTKNIAELSGGEKQRISLIRNLQFMPKVLLLDEITS 166 (225)
T ss_pred ccccccc-ccHHHHHHhHHhhcCCChHHHHHHHHHHHcCCChHHhcCCcccCCHHHHHHHHHHHHHhcCCCEEEEeCCcc
Confidence 9998887 48888875311 010 01111 1222333455567777888888999999999999999
Q ss_pred CCCE
Q 006117 177 LIDL 180 (660)
Q Consensus 177 llDl 180 (660)
.+|.
T Consensus 167 ~LD~ 170 (225)
T PRK10247 167 ALDE 170 (225)
T ss_pred cCCH
Confidence 9997
No 141
>PRK14268 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.38 E-value=5.7e-13 Score=137.27 Aligned_cols=137 Identities=15% Similarity=0.179 Sum_probs=104.0
Q ss_pred cceeeeecCceEEEEecceeeccCCcceEEEEECCCCCcHHHHHHHHHHhC-C-----CceEEEecCcccc---------
Q 006117 40 EDTLSFEKGFFIVIRACQLLAQKNHGIILVGVAGPSGAGKTVFTEKVLNFM-P-----SIAVITMDNYNDS--------- 104 (660)
Q Consensus 40 ~~~ls~~~g~~~vL~~Isl~i~~ge~~~IIGI~GpSGSGKSTLak~L~~lL-p-----~~g~I~lDg~~~~--------- 104 (660)
.+++++.++...++++++|.+.+|+ ++||+|+||||||||+++|++++ | ..|.|.++|....
T Consensus 15 ~~~l~~~~~~~~il~~vs~~i~~Ge---~~~i~G~nGsGKSTLl~~i~Gl~~~~~~~~~~G~i~~~g~~i~~~~~~~~~~ 91 (258)
T PRK14268 15 VENLNLWYGEKQALKNVSMQIPKNS---VTALIGPSGCGKSTFIRCLNRMNDLIKNCRIEGKVSIEGEDIYEPDVDVVEL 91 (258)
T ss_pred EeeeEEEeCCeeeeeeeEEEEcCCC---EEEEECCCCCCHHHHHHHHhcCCCcccCCCcceEEEECCEEcccccchHHHH
Confidence 4556666666779999999999999 99999999999999999999997 3 6899999986531
Q ss_pred cccccccCCCCCCCchhhHHHHHHhhh--cCcc-----------cc---c-----ccccccccccccceeeecCCccEEE
Q 006117 105 SRIIDGNFDDPRLTDYDTLLENIRGLK--EGKA-----------VQ---V-----PIYDFKSSSRIGYRTLEVPSSRIVI 163 (660)
Q Consensus 105 ~~~i~~vfq~p~l~d~~tl~e~L~~L~--~Gk~-----------I~---~-----PiyD~s~~~rs~~~~~~v~~a~VVI 163 (660)
.+.++++||++.+++ .++.+++.... .+.. +. . ...+......++++.+++..++.++
T Consensus 92 ~~~i~~v~q~~~~~~-~tv~enl~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~LSgG~~qrv~laral~ 170 (258)
T PRK14268 92 RKNVGMVFQKPNPFP-MSIYDNVAYGPRIHGANKKDLDGVVENALRSAALWDETSDRLKSPALSLSGGQQQRLCIARTLA 170 (258)
T ss_pred hhhEEEEecCCccCc-ccHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCCcchhhhhcCChhhCCHHHHHHHHHHHHHH
Confidence 134789999998887 78888886321 1100 00 0 1122333445567777888888999
Q ss_pred EecceeecccccCCCCE
Q 006117 164 IEGIYALSEKLRPLIDL 180 (660)
Q Consensus 164 VEGilaL~deLr~llDl 180 (660)
.++.+++.||+...+|.
T Consensus 171 ~~p~llllDEPt~~LD~ 187 (258)
T PRK14268 171 VKPKIILFDEPTSALDP 187 (258)
T ss_pred cCCCEEEEeCCCcccCH
Confidence 99999999999999997
No 142
>TIGR03411 urea_trans_UrtD urea ABC transporter, ATP-binding protein UrtD. Members of this protein family are ABC transporter ATP-binding subunits associated with urea transport and metabolism. This protein is found in a conserved five-gene transport operon typically found adjacent to urease genes. It was shown in Cyanobacteria that disruption leads to the loss of high-affinity urea transport activity.
Probab=99.37 E-value=1e-12 Score=133.66 Aligned_cols=137 Identities=15% Similarity=0.134 Sum_probs=104.9
Q ss_pred ceeeeecCceEEEEecceeeccCCcceEEEEECCCCCcHHHHHHHHHHhC-CCceEEEecCcccc--------ccccccc
Q 006117 41 DTLSFEKGFFIVIRACQLLAQKNHGIILVGVAGPSGAGKTVFTEKVLNFM-PSIAVITMDNYNDS--------SRIIDGN 111 (660)
Q Consensus 41 ~~ls~~~g~~~vL~~Isl~i~~ge~~~IIGI~GpSGSGKSTLak~L~~lL-p~~g~I~lDg~~~~--------~~~i~~v 111 (660)
+++++.++...++++++|.+.+|+ ++||+|+||||||||+++|++.+ |..|.|.++|.... .+.++++
T Consensus 6 ~~l~~~~~~~~~l~~vs~~i~~Ge---~~~l~G~nGsGKSTLl~~l~G~~~p~~G~i~~~g~~~~~~~~~~~~~~~i~~~ 82 (242)
T TIGR03411 6 EGLSVSFDGFKALNDLSLYVDPGE---LRVIIGPNGAGKTTMMDVITGKTRPDEGSVLFGGTDLTGLPEHQIARAGIGRK 82 (242)
T ss_pred EeeEEEcCCeEEeeeeeEEEcCCc---EEEEECCCCCCHHHHHHHHhCCCCCCCCeEEECCeecCCCCHHHHHhcCeeEe
Confidence 445555566789999999999999 99999999999999999999998 89999999997432 1247889
Q ss_pred CCCCCCCchhhHHHHHHhhhcC-------------c----c-------ccc-ccccccccccccceeeecCCccEEEEec
Q 006117 112 FDDPRLTDYDTLLENIRGLKEG-------------K----A-------VQV-PIYDFKSSSRIGYRTLEVPSSRIVIIEG 166 (660)
Q Consensus 112 fq~p~l~d~~tl~e~L~~L~~G-------------k----~-------I~~-PiyD~s~~~rs~~~~~~v~~a~VVIVEG 166 (660)
||++.+++..++.+++...... . . +.. +..+......++++.+++..++.++.++
T Consensus 83 ~q~~~~~~~~tv~~nl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~Ge~qrv~laral~~~p 162 (242)
T TIGR03411 83 FQKPTVFENLTVFENLELALPRDKSVFASLFFRLSAEEKDRIEEVLETIGLADEADRLAGLLSHGQKQWLEIGMLLMQDP 162 (242)
T ss_pred ccccccCCCCCHHHHHHHhhhcccccccccccccHHHHHHHHHHHHHHcCCchhhcCChhhCCHHHHHHHHHHHHHhcCC
Confidence 9999999888998887642110 0 0 000 1122233345566777788888999999
Q ss_pred ceeecccccCCCCE
Q 006117 167 IYALSEKLRPLIDL 180 (660)
Q Consensus 167 ilaL~deLr~llDl 180 (660)
.+++.||+...+|.
T Consensus 163 ~~lllDEPt~~LD~ 176 (242)
T TIGR03411 163 KLLLLDEPVAGMTD 176 (242)
T ss_pred CEEEecCCccCCCH
Confidence 99999999999997
No 143
>cd03213 ABCG_EPDR ABCG transporters are involved in eye pigment (EP) precursor transport, regulation of lipid-trafficking mechanisms, and pleiotropic drug resistance (DR). DR is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. Compared to other members of the ABC transporter subfamilies, the ABCG transporter family is composed of proteins that have an ATP-binding cassette domain at the N-terminus and a TM (transmembrane) domain at the C-terminus.
Probab=99.37 E-value=7.5e-13 Score=131.06 Aligned_cols=116 Identities=16% Similarity=0.103 Sum_probs=96.1
Q ss_pred eEEEEecceeeccCCcceEEEEECCCCCcHHHHHHHHHHhC---CCceEEEecCcccc----cccccccCCCCCCCchhh
Q 006117 50 FIVIRACQLLAQKNHGIILVGVAGPSGAGKTVFTEKVLNFM---PSIAVITMDNYNDS----SRIIDGNFDDPRLTDYDT 122 (660)
Q Consensus 50 ~~vL~~Isl~i~~ge~~~IIGI~GpSGSGKSTLak~L~~lL---p~~g~I~lDg~~~~----~~~i~~vfq~p~l~d~~t 122 (660)
..++++++|.+++|+ +++|+|+||||||||+++|++++ |..|.|.+||.... .+.+++++|++.+++..+
T Consensus 22 ~~~l~~~~~~i~~Ge---~~~l~G~nGsGKStLl~~i~Gl~~~~~~~G~i~~~g~~~~~~~~~~~i~~~~q~~~~~~~~t 98 (194)
T cd03213 22 KQLLKNVSGKAKPGE---LTAIMGPSGAGKSTLLNALAGRRTGLGVSGEVLINGRPLDKRSFRKIIGYVPQDDILHPTLT 98 (194)
T ss_pred ccceecceEEEcCCc---EEEEECCCCCCHHHHHHHHhCCCCCCCCceEEEECCEeCchHhhhheEEEccCcccCCCCCc
Confidence 579999999999999 99999999999999999999997 47899999997542 245789999999888889
Q ss_pred HHHHHHhhhcCcccccccccccccccccceeeecCCccEEEEecceeecccccCCCCE
Q 006117 123 LLENIRGLKEGKAVQVPIYDFKSSSRIGYRTLEVPSSRIVIIEGIYALSEKLRPLIDL 180 (660)
Q Consensus 123 l~e~L~~L~~Gk~I~~PiyD~s~~~rs~~~~~~v~~a~VVIVEGilaL~deLr~llDl 180 (660)
+.+++..... . . ..++++.+++..++.++.++.+++.||+...+|.
T Consensus 99 ~~~~i~~~~~---~----~-----~LS~G~~qrv~laral~~~p~illlDEP~~~LD~ 144 (194)
T cd03213 99 VRETLMFAAK---L----R-----GLSGGERKRVSIALELVSNPSLLFLDEPTSGLDS 144 (194)
T ss_pred HHHHHHHHHH---h----c-----cCCHHHHHHHHHHHHHHcCCCEEEEeCCCcCCCH
Confidence 9998864321 0 0 3445566677778888889999999999999997
No 144
>PRK14239 phosphate transporter ATP-binding protein; Provisional
Probab=99.37 E-value=6.3e-13 Score=135.93 Aligned_cols=137 Identities=18% Similarity=0.159 Sum_probs=102.9
Q ss_pred cceeeeecCceEEEEecceeeccCCcceEEEEECCCCCcHHHHHHHHHHhC---C---CceEEEecCcccc---------
Q 006117 40 EDTLSFEKGFFIVIRACQLLAQKNHGIILVGVAGPSGAGKTVFTEKVLNFM---P---SIAVITMDNYNDS--------- 104 (660)
Q Consensus 40 ~~~ls~~~g~~~vL~~Isl~i~~ge~~~IIGI~GpSGSGKSTLak~L~~lL---p---~~g~I~lDg~~~~--------- 104 (660)
.+++++.++...++++++|.+++|+ ++||+|+||||||||+++|+++. | ..|.|.++|....
T Consensus 8 ~~~l~~~~~~~~~l~~~s~~i~~Ge---~~~i~G~nGsGKSTLl~~l~Gl~~~~p~~~~~G~i~~~g~~~~~~~~~~~~~ 84 (252)
T PRK14239 8 VSDLSVYYNKKKALNSVSLDFYPNE---ITALIGPSGSGKSTLLRSINRMNDLNPEVTITGSIVYNGHNIYSPRTDTVDL 84 (252)
T ss_pred EEeeEEEECCeeeeeeeeEEEcCCc---EEEEECCCCCCHHHHHHHHhcccccCCCCCccceEEECCEECcCcccchHhh
Confidence 3555566566679999999999999 99999999999999999999983 4 3899999986431
Q ss_pred cccccccCCCCCCCchhhHHHHHHhhh--cC----ccccc----------------ccccccccccccceeeecCCccEE
Q 006117 105 SRIIDGNFDDPRLTDYDTLLENIRGLK--EG----KAVQV----------------PIYDFKSSSRIGYRTLEVPSSRIV 162 (660)
Q Consensus 105 ~~~i~~vfq~p~l~d~~tl~e~L~~L~--~G----k~I~~----------------PiyD~s~~~rs~~~~~~v~~a~VV 162 (660)
.+.+++++|++.+++ .++.+++.... .+ ..... ...+...+..++++..++..++.+
T Consensus 85 ~~~i~~v~q~~~~~~-~tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~LS~G~~qrv~laral 163 (252)
T PRK14239 85 RKEIGMVFQQPNPFP-MSIYENVVYGLRLKGIKDKQVLDEAVEKSLKGASIWDEVKDRLHDSALGLSGGQQQRVCIARVL 163 (252)
T ss_pred hhcEEEEecCCccCc-CcHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHcCCchhHHHHHhcCcccCCHHHHHHHHHHHHH
Confidence 135789999998887 78888886321 11 00000 012233344566677788888888
Q ss_pred EEecceeecccccCCCCE
Q 006117 163 IIEGIYALSEKLRPLIDL 180 (660)
Q Consensus 163 IVEGilaL~deLr~llDl 180 (660)
+.++.+++.||+...+|.
T Consensus 164 ~~~p~llllDEPt~~LD~ 181 (252)
T PRK14239 164 ATSPKIILLDEPTSALDP 181 (252)
T ss_pred hcCCCEEEEcCCccccCH
Confidence 999999999999999997
No 145
>PRK09700 D-allose transporter ATP-binding protein; Provisional
Probab=99.36 E-value=8.5e-13 Score=148.57 Aligned_cols=158 Identities=15% Similarity=0.177 Sum_probs=117.6
Q ss_pred cceeeeecCceEEEEecceeeccCCcceEEEEECCCCCcHHHHHHHHHHhC-CCceEEEecCcccc--------cccccc
Q 006117 40 EDTLSFEKGFFIVIRACQLLAQKNHGIILVGVAGPSGAGKTVFTEKVLNFM-PSIAVITMDNYNDS--------SRIIDG 110 (660)
Q Consensus 40 ~~~ls~~~g~~~vL~~Isl~i~~ge~~~IIGI~GpSGSGKSTLak~L~~lL-p~~g~I~lDg~~~~--------~~~i~~ 110 (660)
.+++++.++...+++++||.+++|+ ++||+|+||||||||+++|++++ |+.|.|.++|.... .+.+++
T Consensus 8 ~~~l~~~~~~~~il~~vs~~i~~Ge---~~~liG~nGsGKSTLl~~i~Gl~~p~~G~i~~~g~~i~~~~~~~~~~~~i~~ 84 (510)
T PRK09700 8 MAGIGKSFGPVHALKSVNLTVYPGE---IHALLGENGAGKSTLMKVLSGIHEPTKGTITINNINYNKLDHKLAAQLGIGI 84 (510)
T ss_pred EeeeEEEcCCeEEeeeeeEEEcCCc---EEEEECCCCCCHHHHHHHHcCCcCCCccEEEECCEECCCCCHHHHHHCCeEE
Confidence 4556666666789999999999999 99999999999999999999998 78999999986432 134789
Q ss_pred cCCCCCCCchhhHHHHHHhhhc------Cc------c-----------ccc-ccccccccccccceeeecCCccEEEEec
Q 006117 111 NFDDPRLTDYDTLLENIRGLKE------GK------A-----------VQV-PIYDFKSSSRIGYRTLEVPSSRIVIIEG 166 (660)
Q Consensus 111 vfq~p~l~d~~tl~e~L~~L~~------Gk------~-----------I~~-PiyD~s~~~rs~~~~~~v~~a~VVIVEG 166 (660)
+||++.+++..++.+++..... +. . +.. ...+...+..++++.+++..+..++.++
T Consensus 85 v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~LSgG~~qrv~ia~al~~~p 164 (510)
T PRK09700 85 IYQELSVIDELTVLENLYIGRHLTKKVCGVNIIDWREMRVRAAMMLLRVGLKVDLDEKVANLSISHKQMLEIAKTLMLDA 164 (510)
T ss_pred EeecccccCCCcHHHHhhhccccccccccccccCHHHHHHHHHHHHHHcCCCCCcccchhhCCHHHHHHHHHHHHHhcCC
Confidence 9999988888889888753110 10 0 000 1123334456677888888999999999
Q ss_pred ceeecccccCCCCEEEEEEcChhHHHHHHHHHHHHHhCCCH
Q 006117 167 IYALSEKLRPLIDLRVSVTGGVHFDLVKRVFRDIQRVGQEP 207 (660)
Q Consensus 167 ilaL~deLr~llDlkIfVdad~dirLiRRI~RDv~eRGrs~ 207 (660)
.+++.||+...+|. .....+..+.+++.+.|.+.
T Consensus 165 ~lllLDEPt~~LD~-------~~~~~l~~~l~~l~~~g~ti 198 (510)
T PRK09700 165 KVIIMDEPTSSLTN-------KEVDYLFLIMNQLRKEGTAI 198 (510)
T ss_pred CEEEEeCCCCCCCH-------HHHHHHHHHHHHHHhCCCEE
Confidence 99999999999997 34444555555555445543
No 146
>PRK13635 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=99.36 E-value=6.7e-13 Score=138.79 Aligned_cols=158 Identities=15% Similarity=0.196 Sum_probs=113.9
Q ss_pred cceeeeecC--ceEEEEecceeeccCCcceEEEEECCCCCcHHHHHHHHHHhC-CCceEEEecCcccc-------ccccc
Q 006117 40 EDTLSFEKG--FFIVIRACQLLAQKNHGIILVGVAGPSGAGKTVFTEKVLNFM-PSIAVITMDNYNDS-------SRIID 109 (660)
Q Consensus 40 ~~~ls~~~g--~~~vL~~Isl~i~~ge~~~IIGI~GpSGSGKSTLak~L~~lL-p~~g~I~lDg~~~~-------~~~i~ 109 (660)
.+++++.++ ...++++++|.+++|+ ++||+|+||||||||+++|++.+ |..|.|.++|.... .+.++
T Consensus 8 ~~~l~~~~~~~~~~~l~~vsl~i~~Ge---~~~i~G~nGaGKSTLl~~i~G~~~p~~G~i~~~g~~i~~~~~~~~~~~i~ 84 (279)
T PRK13635 8 VEHISFRYPDAATYALKDVSFSVYEGE---WVAIVGHNGSGKSTLAKLLNGLLLPEAGTITVGGMVLSEETVWDVRRQVG 84 (279)
T ss_pred EEEEEEEeCCCCccceeeeEEEEcCCC---EEEEECCCCCcHHHHHHHHhcCCCCCCcEEEECCEECCcCcHHHHhhheE
Confidence 345555554 3569999999999999 99999999999999999999998 79999999997542 13578
Q ss_pred ccCCCCC-CCchhhHHHHHHhhhc--Ccc-------c-------c-cccccccccccccceeeecCCccEEEEecceeec
Q 006117 110 GNFDDPR-LTDYDTLLENIRGLKE--GKA-------V-------Q-VPIYDFKSSSRIGYRTLEVPSSRIVIIEGIYALS 171 (660)
Q Consensus 110 ~vfq~p~-l~d~~tl~e~L~~L~~--Gk~-------I-------~-~PiyD~s~~~rs~~~~~~v~~a~VVIVEGilaL~ 171 (660)
++||++. ++...++.+++..... +.. + . .+..+...+..++++..++..++.++.++.+++.
T Consensus 85 ~~~q~~~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~l~~~gL~~~~~~~~~~LS~G~~qrv~laral~~~p~lllL 164 (279)
T PRK13635 85 MVFQNPDNQFVGATVQDDVAFGLENIGVPREEMVERVDQALRQVGMEDFLNREPHRLSGGQKQRVAIAGVLALQPDIIIL 164 (279)
T ss_pred EEEeCHHHhcccccHHHHHhhhHhhCCCCHHHHHHHHHHHHHHcCChhhhhCCcccCCHHHHHHHHHHHHHHcCCCEEEE
Confidence 9999984 5666788888864211 100 0 0 0122333445566777788888899999999999
Q ss_pred ccccCCCCEEEEEEcChhHHHHHHHHHHHHHh-CCCH
Q 006117 172 EKLRPLIDLRVSVTGGVHFDLVKRVFRDIQRV-GQEP 207 (660)
Q Consensus 172 deLr~llDlkIfVdad~dirLiRRI~RDv~eR-Grs~ 207 (660)
||+...+|. .....+..+.++.... |.+.
T Consensus 165 DEPt~gLD~-------~~~~~l~~~l~~l~~~~~~ti 194 (279)
T PRK13635 165 DEATSMLDP-------RGRREVLETVRQLKEQKGITV 194 (279)
T ss_pred eCCcccCCH-------HHHHHHHHHHHHHHHcCCCEE
Confidence 999999997 3444555555555443 5554
No 147
>PRK13637 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=99.36 E-value=9.4e-13 Score=138.20 Aligned_cols=148 Identities=15% Similarity=0.184 Sum_probs=109.2
Q ss_pred eEEEEecceeeccCCcceEEEEECCCCCcHHHHHHHHHHhC-CCceEEEecCcccc---------cccccccCCCCC-CC
Q 006117 50 FIVIRACQLLAQKNHGIILVGVAGPSGAGKTVFTEKVLNFM-PSIAVITMDNYNDS---------SRIIDGNFDDPR-LT 118 (660)
Q Consensus 50 ~~vL~~Isl~i~~ge~~~IIGI~GpSGSGKSTLak~L~~lL-p~~g~I~lDg~~~~---------~~~i~~vfq~p~-l~ 118 (660)
..++++|||.+.+|+ ++||+|+||||||||+++|++++ |..|.|.++|.... .+.++++||+|. .+
T Consensus 20 ~~~l~~vs~~i~~Ge---~~~i~G~nGaGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~~~ig~v~q~~~~~~ 96 (287)
T PRK13637 20 KKALDNVNIEIEDGE---FVGLIGHTGSGKSTLIQHLNGLLKPTSGKIIIDGVDITDKKVKLSDIRKKVGLVFQYPEYQL 96 (287)
T ss_pred cceeeeeEEEEcCCC---EEEEECCCCCcHHHHHHHHhcCCCCCccEEEECCEECCCcCccHHHHhhceEEEecCchhcc
Confidence 469999999999999 99999999999999999999998 89999999997542 135789999874 23
Q ss_pred chhhHHHHHHhhhc--C--------------ccccc---ccccccccccccceeeecCCccEEEEecceeecccccCCCC
Q 006117 119 DYDTLLENIRGLKE--G--------------KAVQV---PIYDFKSSSRIGYRTLEVPSSRIVIIEGIYALSEKLRPLID 179 (660)
Q Consensus 119 d~~tl~e~L~~L~~--G--------------k~I~~---PiyD~s~~~rs~~~~~~v~~a~VVIVEGilaL~deLr~llD 179 (660)
...++.+++..... + +.+.. ...+...+..++++.+++..++.++.++.+++.||+...+|
T Consensus 97 ~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~gL~~~~~~~~~~~~LSgGq~qrv~iAraL~~~P~llllDEPt~gLD 176 (287)
T PRK13637 97 FEETIEKDIAFGPINLGLSEEEIENRVKRAMNIVGLDYEDYKDKSPFELSGGQKRRVAIAGVVAMEPKILILDEPTAGLD 176 (287)
T ss_pred ccccHHHHHHhHHHHCCCCHHHHHHHHHHHHHHcCCCchhhccCCcccCCHHHHHHHHHHHHHHcCCCEEEEECCccCCC
Confidence 34688888753210 1 01112 12344455667778888888999999999999999999999
Q ss_pred EEEEEEcChhHHHHHHHHHHHHHh-CCCH
Q 006117 180 LRVSVTGGVHFDLVKRVFRDIQRV-GQEP 207 (660)
Q Consensus 180 lkIfVdad~dirLiRRI~RDv~eR-Grs~ 207 (660)
. ...+....+.+++.+. |.+.
T Consensus 177 ~-------~~~~~l~~~l~~l~~~~g~tv 198 (287)
T PRK13637 177 P-------KGRDEILNKIKELHKEYNMTI 198 (287)
T ss_pred H-------HHHHHHHHHHHHHHHhcCCEE
Confidence 7 3444555555555443 5554
No 148
>cd03247 ABCC_cytochrome_bd The CYD subfamily implicated in cytochrome bd biogenesis. The CydC and CydD proteins are important for the formation of cytochrome bd terminal oxidase of E. coli and it has been proposed that they were necessary for biosynthesis of the cytochrome bd quinol oxidase and for periplasmic c-type cytochromes. CydCD were proposed to determine a heterooligomeric complex important for heme export into the periplasm or to be involved in the maintenance of the proper redox state of the periplasmic space. In Bacillus subtilius, the absence of CydCD does not affect the presence of halo-cytochrome c in the membrane and this observation suggests that CydCD proteins are not involved in the export of heme in this organism.
Probab=99.36 E-value=5.4e-13 Score=129.96 Aligned_cols=109 Identities=23% Similarity=0.277 Sum_probs=91.4
Q ss_pred EEEEecceeeccCCcceEEEEECCCCCcHHHHHHHHHHhC-CCceEEEecCcccc------cccccccCCCCCCCchhhH
Q 006117 51 IVIRACQLLAQKNHGIILVGVAGPSGAGKTVFTEKVLNFM-PSIAVITMDNYNDS------SRIIDGNFDDPRLTDYDTL 123 (660)
Q Consensus 51 ~vL~~Isl~i~~ge~~~IIGI~GpSGSGKSTLak~L~~lL-p~~g~I~lDg~~~~------~~~i~~vfq~p~l~d~~tl 123 (660)
.++++++|.+++|+ +++|+|+||||||||+++|+++. |..|.|.++|.... .+.+++++|++.+++ .++
T Consensus 16 ~~l~~i~~~i~~Ge---~~~i~G~nGsGKStLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~i~~~~q~~~~~~-~tv 91 (178)
T cd03247 16 QVLKNLSLELKQGE---KIALLGRSGSGKSTLLQLLTGDLKPQQGEITLDGVPVSDLEKALSSLISVLNQRPYLFD-TTL 91 (178)
T ss_pred cceEEEEEEEcCCC---EEEEECCCCCCHHHHHHHHhccCCCCCCEEEECCEEHHHHHHHHHhhEEEEccCCeeec-ccH
Confidence 68999999999999 99999999999999999999998 78999999986432 245788999988876 588
Q ss_pred HHHHHhhhcCcccccccccccccccccceeeecCCccEEEEecceeecccccCCCCE
Q 006117 124 LENIRGLKEGKAVQVPIYDFKSSSRIGYRTLEVPSSRIVIIEGIYALSEKLRPLIDL 180 (660)
Q Consensus 124 ~e~L~~L~~Gk~I~~PiyD~s~~~rs~~~~~~v~~a~VVIVEGilaL~deLr~llDl 180 (660)
.+++ ....++++.+++..++.++.++.+++.||+...+|.
T Consensus 92 ~~~i-----------------~~~LS~G~~qrv~laral~~~p~~lllDEP~~~LD~ 131 (178)
T cd03247 92 RNNL-----------------GRRFSGGERQRLALARILLQDAPIVLLDEPTVGLDP 131 (178)
T ss_pred HHhh-----------------cccCCHHHHHHHHHHHHHhcCCCEEEEECCcccCCH
Confidence 8876 233445566677778888889999999999999987
No 149
>TIGR00972 3a0107s01c2 phosphate ABC transporter, ATP-binding protein. This model represents the ATP-binding protein of a family of ABC transporters for inorganic phosphate. In the model species Escherichia coli, a constitutive transporter for inorganic phosphate, with low affinity, is also present. The high affinity transporter that includes this polypeptide is induced when extracellular phosphate concentrations are low. The proteins most similar to the members of this family but not included appear to be amino acid transporters.
Probab=99.36 E-value=1.2e-12 Score=133.71 Aligned_cols=136 Identities=18% Similarity=0.180 Sum_probs=104.5
Q ss_pred ceeeeecCceEEEEecceeeccCCcceEEEEECCCCCcHHHHHHHHHHhC-CC-----ceEEEecCcccc---------c
Q 006117 41 DTLSFEKGFFIVIRACQLLAQKNHGIILVGVAGPSGAGKTVFTEKVLNFM-PS-----IAVITMDNYNDS---------S 105 (660)
Q Consensus 41 ~~ls~~~g~~~vL~~Isl~i~~ge~~~IIGI~GpSGSGKSTLak~L~~lL-p~-----~g~I~lDg~~~~---------~ 105 (660)
+++++.++...++++++|.+++|+ ++||+|+||||||||+++|++++ |. .|.|.++|.... .
T Consensus 5 ~~l~~~~~~~~~l~~vs~~i~~Ge---~~~i~G~nGsGKSTLl~~l~G~~~p~~~~~~~G~i~~~g~~~~~~~~~~~~~~ 81 (247)
T TIGR00972 5 ENLNLFYGEKEALKNINLDIPKNQ---VTALIGPSGCGKSTLLRSLNRMNDLVPGVRIEGKVLFDGQDIYDKKIDVVELR 81 (247)
T ss_pred EEEEEEECCeeeecceeEEECCCC---EEEEECCCCCCHHHHHHHHhccCCCCcCCCCceEEEECCEEccccccchHHHH
Confidence 445555566679999999999999 99999999999999999999998 66 899999987532 1
Q ss_pred ccccccCCCCCCCchhhHHHHHHhhh--cC----c----c-------ccc-----ccccccccccccceeeecCCccEEE
Q 006117 106 RIIDGNFDDPRLTDYDTLLENIRGLK--EG----K----A-------VQV-----PIYDFKSSSRIGYRTLEVPSSRIVI 163 (660)
Q Consensus 106 ~~i~~vfq~p~l~d~~tl~e~L~~L~--~G----k----~-------I~~-----PiyD~s~~~rs~~~~~~v~~a~VVI 163 (660)
+.++++||++.+++ .++.+++.... .+ . . +.. ...+...+..++++.+++..++.++
T Consensus 82 ~~i~~v~q~~~~~~-~tv~e~l~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~LSgG~~qrv~laral~ 160 (247)
T TIGR00972 82 RRVGMVFQKPNPFP-MSIYDNIAYGPRLHGIKDKKELDEIVEESLKKAALWDEVKDRLHDSALGLSGGQQQRLCIARALA 160 (247)
T ss_pred hheEEEecCcccCC-CCHHHHHHhHHHhcCCCCHHHHHHHHHHHHHHcCCCcchhhHhhCCcccCCHHHHHHHHHHHHHh
Confidence 35789999998888 88888876321 11 0 0 011 1123334455667778888888999
Q ss_pred EecceeecccccCCCCE
Q 006117 164 IEGIYALSEKLRPLIDL 180 (660)
Q Consensus 164 VEGilaL~deLr~llDl 180 (660)
.++.+++.||+...+|.
T Consensus 161 ~~p~llllDEPt~~LD~ 177 (247)
T TIGR00972 161 VEPEVLLLDEPTSALDP 177 (247)
T ss_pred cCCCEEEEeCCcccCCH
Confidence 99999999999999997
No 150
>TIGR03740 galliderm_ABC gallidermin-class lantibiotic protection ABC transporter, ATP-binding subunit. Model TIGR03731 represents the family of all lantibiotics related to gallidermin, including epidermin, mutatin, and nisin. This protein family describes the ATP-binding subunit of a gallidermin/epidermin class lantibiotic protection transporter. It is largely restricted to gallidermin-family lantibiotic biosynthesis and export cassettes, but also occurs in orphan transporter cassettes in species that lack candidate lantibiotic precursor and synthetase genes.
Probab=99.36 E-value=1.1e-12 Score=131.90 Aligned_cols=156 Identities=18% Similarity=0.195 Sum_probs=112.3
Q ss_pred ceeeeecCceEEEEecceeeccCCcceEEEEECCCCCcHHHHHHHHHHhC-CCceEEEecCcccc---cccccccCCCCC
Q 006117 41 DTLSFEKGFFIVIRACQLLAQKNHGIILVGVAGPSGAGKTVFTEKVLNFM-PSIAVITMDNYNDS---SRIIDGNFDDPR 116 (660)
Q Consensus 41 ~~ls~~~g~~~vL~~Isl~i~~ge~~~IIGI~GpSGSGKSTLak~L~~lL-p~~g~I~lDg~~~~---~~~i~~vfq~p~ 116 (660)
+++++.++...++++++|.+.+|+ ++||+|+||||||||+++|++.+ |..|.|.+++.... .+.++++||++.
T Consensus 4 ~~v~~~~~~~~~l~~vs~~i~~Ge---~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~~~~~~~~~~~~~~~~~q~~~ 80 (223)
T TIGR03740 4 KNLSKRFGKQTAVNNISLTVPKNS---VYGLLGPNGAGKSTLLKMITGILRPTSGEIIFDGHPWTRKDLHKIGSLIESPP 80 (223)
T ss_pred EeEEEEECCEEEEeeeEEEEcCCc---EEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEeccccccccEEEEcCCCC
Confidence 344455555679999999999999 99999999999999999999998 78999999986432 135788999998
Q ss_pred CCchhhHHHHHHhhhc--Cc---c-------ccc-ccccccccccccceeeecCCccEEEEecceeecccccCCCCEEEE
Q 006117 117 LTDYDTLLENIRGLKE--GK---A-------VQV-PIYDFKSSSRIGYRTLEVPSSRIVIIEGIYALSEKLRPLIDLRVS 183 (660)
Q Consensus 117 l~d~~tl~e~L~~L~~--Gk---~-------I~~-PiyD~s~~~rs~~~~~~v~~a~VVIVEGilaL~deLr~llDlkIf 183 (660)
+++..++.+++..... +. . ... +..+......++++..++..+..++.++.+++.||+...+|.
T Consensus 81 ~~~~~t~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~~rv~laral~~~p~llllDEP~~~LD~--- 157 (223)
T TIGR03740 81 LYENLTARENLKVHTTLLGLPDSRIDEVLNIVDLTNTGKKKAKQFSLGMKQRLGIAIALLNHPKLLILDEPTNGLDP--- 157 (223)
T ss_pred ccccCCHHHHHHHHHHHcCCCHHHHHHHHHHcCCcHHHhhhHhhCCHHHHHHHHHHHHHhcCCCEEEECCCccCCCH---
Confidence 8887888888753211 10 0 001 112223334566677778888889999999999999999997
Q ss_pred EEcChhHHHHHHHHHHHHHhCCC
Q 006117 184 VTGGVHFDLVKRVFRDIQRVGQE 206 (660)
Q Consensus 184 Vdad~dirLiRRI~RDv~eRGrs 206 (660)
.....+..+.++....|.+
T Consensus 158 ----~~~~~l~~~L~~~~~~~~t 176 (223)
T TIGR03740 158 ----IGIQELRELIRSFPEQGIT 176 (223)
T ss_pred ----HHHHHHHHHHHHHHHCCCE
Confidence 3334444555554444443
No 151
>PRK13548 hmuV hemin importer ATP-binding subunit; Provisional
Probab=99.36 E-value=1.2e-12 Score=135.03 Aligned_cols=137 Identities=18% Similarity=0.166 Sum_probs=103.2
Q ss_pred ceeeeecCceEEEEecceeeccCCcceEEEEECCCCCcHHHHHHHHHHhC-CCceEEEecCcccc-------cccccccC
Q 006117 41 DTLSFEKGFFIVIRACQLLAQKNHGIILVGVAGPSGAGKTVFTEKVLNFM-PSIAVITMDNYNDS-------SRIIDGNF 112 (660)
Q Consensus 41 ~~ls~~~g~~~vL~~Isl~i~~ge~~~IIGI~GpSGSGKSTLak~L~~lL-p~~g~I~lDg~~~~-------~~~i~~vf 112 (660)
+++++.++...++++++|.+++|+ ++||+|+||||||||+++|++++ |..|.|.++|.... .+.+++++
T Consensus 6 ~~l~~~~~~~~il~~is~~i~~Ge---~~~i~G~nGsGKSTLl~~i~G~~~p~~G~i~~~g~~~~~~~~~~~~~~i~~~~ 82 (258)
T PRK13548 6 RNLSVRLGGRTLLDDVSLTLRPGE---VVAILGPNGAGKSTLLRALSGELSPDSGEVRLNGRPLADWSPAELARRRAVLP 82 (258)
T ss_pred EeEEEEeCCeeeeeeeeEEEcCCC---EEEEECCCCCCHHHHHHHHhCCCCCCCCEEEECCEEcccCCHHHhhhheEEEc
Confidence 445555566779999999999999 99999999999999999999998 78999999996432 13478899
Q ss_pred CCCCCCchhhHHHHHHhhhc--Cc-------c-------ccc-ccccccccccccceeeecCCccEEE------Eeccee
Q 006117 113 DDPRLTDYDTLLENIRGLKE--GK-------A-------VQV-PIYDFKSSSRIGYRTLEVPSSRIVI------IEGIYA 169 (660)
Q Consensus 113 q~p~l~d~~tl~e~L~~L~~--Gk-------~-------I~~-PiyD~s~~~rs~~~~~~v~~a~VVI------VEGila 169 (660)
|++.+++..++.+++..... +. . +.. ...+...+..++++.+++..+..++ .++.++
T Consensus 83 q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgGe~qrv~la~al~~~~~~~~~p~ll 162 (258)
T PRK13548 83 QHSSLSFPFTVEEVVAMGRAPHGLSRAEDDALVAAALAQVDLAHLAGRDYPQLSGGEQQRVQLARVLAQLWEPDGPPRWL 162 (258)
T ss_pred cCCcCCCCCCHHHHHHhhhcccCCCcHHHHHHHHHHHHHcCCHhHhcCCcccCCHHHHHHHHHHHHHhcccccCCCCCEE
Confidence 99888777788888754211 10 0 011 1123334455666777788888888 478888
Q ss_pred ecccccCCCCE
Q 006117 170 LSEKLRPLIDL 180 (660)
Q Consensus 170 L~deLr~llDl 180 (660)
+.||+...+|.
T Consensus 163 lLDEPt~~LD~ 173 (258)
T PRK13548 163 LLDEPTSALDL 173 (258)
T ss_pred EEeCCcccCCH
Confidence 89999999997
No 152
>PRK13652 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=99.36 E-value=1.2e-12 Score=136.64 Aligned_cols=157 Identities=15% Similarity=0.188 Sum_probs=111.1
Q ss_pred ceeeeecC-ceEEEEecceeeccCCcceEEEEECCCCCcHHHHHHHHHHhC-CCceEEEecCccccc-------cccccc
Q 006117 41 DTLSFEKG-FFIVIRACQLLAQKNHGIILVGVAGPSGAGKTVFTEKVLNFM-PSIAVITMDNYNDSS-------RIIDGN 111 (660)
Q Consensus 41 ~~ls~~~g-~~~vL~~Isl~i~~ge~~~IIGI~GpSGSGKSTLak~L~~lL-p~~g~I~lDg~~~~~-------~~i~~v 111 (660)
+++++.++ ...++++++|.+++|+ ++||+|+||||||||+++|++++ |..|.|.++|..... +.++++
T Consensus 7 ~~l~~~~~~~~~~l~~vsl~i~~Ge---~~~i~G~NGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~i~~v 83 (277)
T PRK13652 7 RDLCYSYSGSKEALNNINFIAPRNS---RIAVIGPNGAGKSTLFRHFNGILKPTSGSVLIRGEPITKENIREVRKFVGLV 83 (277)
T ss_pred EEEEEEeCCCCceeeEeEEEEcCCC---EEEEECCCCCCHHHHHHHHhcCCCCCceEEEECCEECCcCCHHHHHhheEEE
Confidence 45555553 3469999999999999 99999999999999999999998 899999999975321 347889
Q ss_pred CCCCC-CCchhhHHHHHHhhhc--Cc--------------cccc-ccccccccccccceeeecCCccEEEEecceeeccc
Q 006117 112 FDDPR-LTDYDTLLENIRGLKE--GK--------------AVQV-PIYDFKSSSRIGYRTLEVPSSRIVIIEGIYALSEK 173 (660)
Q Consensus 112 fq~p~-l~d~~tl~e~L~~L~~--Gk--------------~I~~-PiyD~s~~~rs~~~~~~v~~a~VVIVEGilaL~de 173 (660)
||++. .+...++.+++..... +. .+.. +..+......++++.+++..+..++.++.+++.||
T Consensus 84 ~q~~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~Gq~qrl~laraL~~~p~llilDE 163 (277)
T PRK13652 84 FQNPDDQIFSPTVEQDIAFGPINLGLDEETVAHRVSSALHMLGLEELRDRVPHHLSGGEKKRVAIAGVIAMEPQVLVLDE 163 (277)
T ss_pred ecCcccccccccHHHHHHhHHHHcCCCHHHHHHHHHHHHHHCCChhHhcCCcccCCHHHHHHHHHHHHHHcCCCEEEEeC
Confidence 99874 2334688888753211 10 0001 22333444566677788888889999999999999
Q ss_pred ccCCCCEEEEEEcChhHHHHHHHHHHHHHh-CCCH
Q 006117 174 LRPLIDLRVSVTGGVHFDLVKRVFRDIQRV-GQEP 207 (660)
Q Consensus 174 Lr~llDlkIfVdad~dirLiRRI~RDv~eR-Grs~ 207 (660)
+...+|. ...+...++.+.+... |.+.
T Consensus 164 Pt~gLD~-------~~~~~l~~~l~~l~~~~g~tv 191 (277)
T PRK13652 164 PTAGLDP-------QGVKELIDFLNDLPETYGMTV 191 (277)
T ss_pred CcccCCH-------HHHHHHHHHHHHHHHhcCCEE
Confidence 9999997 3344455555554432 5443
No 153
>PRK14270 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.36 E-value=1e-12 Score=134.54 Aligned_cols=137 Identities=15% Similarity=0.152 Sum_probs=102.3
Q ss_pred cceeeeecCceEEEEecceeeccCCcceEEEEECCCCCcHHHHHHHHHHhC-C-----CceEEEecCcccc---------
Q 006117 40 EDTLSFEKGFFIVIRACQLLAQKNHGIILVGVAGPSGAGKTVFTEKVLNFM-P-----SIAVITMDNYNDS--------- 104 (660)
Q Consensus 40 ~~~ls~~~g~~~vL~~Isl~i~~ge~~~IIGI~GpSGSGKSTLak~L~~lL-p-----~~g~I~lDg~~~~--------- 104 (660)
.+++++.++...++++++|.+.+|+ ++||+|+||||||||+++|+++. | ..|.|.++|....
T Consensus 7 ~~~l~~~~~~~~~l~~isl~i~~Ge---~~~i~G~nGsGKSTLl~~l~G~~~~~~~~~~~G~i~~~g~~i~~~~~~~~~~ 83 (251)
T PRK14270 7 SKNLNLWYGEKQALNDINLPIYENK---ITALIGPSGCGKSTFLRCLNRMNDLISNVKIEGEVLLDGKNIYDKDVDVVEL 83 (251)
T ss_pred EEEeEEEECCeeeeeceeEEEcCCC---EEEEECCCCCCHHHHHHHHHhccCcccCCCCccEEEECCEecccccccHHHH
Confidence 4555555566679999999999999 99999999999999999999986 3 6899999987532
Q ss_pred cccccccCCCCCCCchhhHHHHHHhhh--cCc--c-------------ccc-----ccccccccccccceeeecCCccEE
Q 006117 105 SRIIDGNFDDPRLTDYDTLLENIRGLK--EGK--A-------------VQV-----PIYDFKSSSRIGYRTLEVPSSRIV 162 (660)
Q Consensus 105 ~~~i~~vfq~p~l~d~~tl~e~L~~L~--~Gk--~-------------I~~-----PiyD~s~~~rs~~~~~~v~~a~VV 162 (660)
.+.+++++|++.+++ .++.+++.... .+. . ... ...+......++++.+++..+..+
T Consensus 84 ~~~i~~~~q~~~~~~-~tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~LS~G~~qrv~laral 162 (251)
T PRK14270 84 RKRVGMVFQKPNPFP-MSIYDNVAYGPRIHGIKDKKELDKIVEWALKKAALWDEVKDDLKKSALKLSGGQQQRLCIARTI 162 (251)
T ss_pred HhheEEEecCCCcCC-CcHHHHHHhHHHhcCCCcHHHHHHHHHHHHHHcCCchhhhhHhhCCcccCCHHHHHHHHHHHHH
Confidence 134789999998887 78888886321 110 0 000 011223344555677777788888
Q ss_pred EEecceeecccccCCCCE
Q 006117 163 IIEGIYALSEKLRPLIDL 180 (660)
Q Consensus 163 IVEGilaL~deLr~llDl 180 (660)
+.++.+++.||+...+|.
T Consensus 163 ~~~p~llllDEP~~~LD~ 180 (251)
T PRK14270 163 AVKPDVILMDEPTSALDP 180 (251)
T ss_pred hcCCCEEEEeCCcccCCH
Confidence 889999999999999997
No 154
>PRK13650 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=99.36 E-value=8.7e-13 Score=137.84 Aligned_cols=148 Identities=12% Similarity=0.115 Sum_probs=110.6
Q ss_pred eEEEEecceeeccCCcceEEEEECCCCCcHHHHHHHHHHhC-CCceEEEecCccccc-------ccccccCCCCC-CCch
Q 006117 50 FIVIRACQLLAQKNHGIILVGVAGPSGAGKTVFTEKVLNFM-PSIAVITMDNYNDSS-------RIIDGNFDDPR-LTDY 120 (660)
Q Consensus 50 ~~vL~~Isl~i~~ge~~~IIGI~GpSGSGKSTLak~L~~lL-p~~g~I~lDg~~~~~-------~~i~~vfq~p~-l~d~ 120 (660)
..+|++++|.+++|+ ++||+|+||||||||+++|++++ |..|.|.+||..... +.++++||+|. .+..
T Consensus 20 ~~~l~~vsl~i~~Ge---~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~i~~~~~~~~~~~i~~v~q~~~~~~~~ 96 (279)
T PRK13650 20 KYTLNDVSFHVKQGE---WLSIIGHNGSGKSTTVRLIDGLLEAESGQIIIDGDLLTEENVWDIRHKIGMVFQNPDNQFVG 96 (279)
T ss_pred CeeeeeeEEEEeCCC---EEEEECCCCCCHHHHHHHHhcCCCCCCcEEEECCEECCcCcHHHHHhhceEEEcChHHhccc
Confidence 459999999999999 99999999999999999999998 899999999975431 35789999984 6666
Q ss_pred hhHHHHHHhhhc--Cc--------------cccc-ccccccccccccceeeecCCccEEEEecceeecccccCCCCEEEE
Q 006117 121 DTLLENIRGLKE--GK--------------AVQV-PIYDFKSSSRIGYRTLEVPSSRIVIIEGIYALSEKLRPLIDLRVS 183 (660)
Q Consensus 121 ~tl~e~L~~L~~--Gk--------------~I~~-PiyD~s~~~rs~~~~~~v~~a~VVIVEGilaL~deLr~llDlkIf 183 (660)
.++.+++..... +- .+.. +..+...+..++++.+++..++.++.++.+++.||+...+|.
T Consensus 97 ~tv~eni~~~~~~~~~~~~~~~~~~~~~l~~~gL~~~~~~~~~~LSgGq~qrv~lAral~~~p~lLlLDEPt~~LD~--- 173 (279)
T PRK13650 97 ATVEDDVAFGLENKGIPHEEMKERVNEALELVGMQDFKEREPARLSGGQKQRVAIAGAVAMRPKIIILDEATSMLDP--- 173 (279)
T ss_pred ccHHHHHHhhHHhCCCCHHHHHHHHHHHHHHCCCHhHhhCCcccCCHHHHHHHHHHHHHHcCCCEEEEECCcccCCH---
Confidence 788888864211 10 0011 122334455666778888889999999999999999999997
Q ss_pred EEcChhHHHHHHHHHHHHH-hCCCH
Q 006117 184 VTGGVHFDLVKRVFRDIQR-VGQEP 207 (660)
Q Consensus 184 Vdad~dirLiRRI~RDv~e-RGrs~ 207 (660)
...+.+..+.+++.. .|.+.
T Consensus 174 ----~~~~~l~~~l~~l~~~~g~ti 194 (279)
T PRK13650 174 ----EGRLELIKTIKGIRDDYQMTV 194 (279)
T ss_pred ----HHHHHHHHHHHHHHHhcCCEE
Confidence 344455555555544 36554
No 155
>PRK10575 iron-hydroxamate transporter ATP-binding subunit; Provisional
Probab=99.36 E-value=1.2e-12 Score=135.44 Aligned_cols=138 Identities=17% Similarity=0.118 Sum_probs=104.9
Q ss_pred cceeeeecCceEEEEecceeeccCCcceEEEEECCCCCcHHHHHHHHHHhC-CCceEEEecCcccc-------ccccccc
Q 006117 40 EDTLSFEKGFFIVIRACQLLAQKNHGIILVGVAGPSGAGKTVFTEKVLNFM-PSIAVITMDNYNDS-------SRIIDGN 111 (660)
Q Consensus 40 ~~~ls~~~g~~~vL~~Isl~i~~ge~~~IIGI~GpSGSGKSTLak~L~~lL-p~~g~I~lDg~~~~-------~~~i~~v 111 (660)
.+++++.++...++++++|.+.+|+ ++||+|+||||||||+++|++++ |..|.|.++|.... .+.++++
T Consensus 14 i~~l~~~~~~~~il~~vs~~i~~Ge---~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~~~i~~v 90 (265)
T PRK10575 14 LRNVSFRVPGRTLLHPLSLTFPAGK---VTGLIGHNGSGKSTLLKMLGRHQPPSEGEILLDAQPLESWSSKAFARKVAYL 90 (265)
T ss_pred EeeEEEEECCEEEEeeeeeEEcCCC---EEEEECCCCCCHHHHHHHHcCCCCCCCCEEEECCEehhhCCHHHHhhheEEe
Confidence 3455555566789999999999999 99999999999999999999998 78999999986432 1347889
Q ss_pred CCCCCCCchhhHHHHHHhhhc---C------c-----------cccc-ccccccccccccceeeecCCccEEEEecceee
Q 006117 112 FDDPRLTDYDTLLENIRGLKE---G------K-----------AVQV-PIYDFKSSSRIGYRTLEVPSSRIVIIEGIYAL 170 (660)
Q Consensus 112 fq~p~l~d~~tl~e~L~~L~~---G------k-----------~I~~-PiyD~s~~~rs~~~~~~v~~a~VVIVEGilaL 170 (660)
+|++.+++..++.+++..... + . .+.. ...+...+..++++.+++..++.++.++.+++
T Consensus 91 ~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgG~~qrv~laral~~~p~lll 170 (265)
T PRK10575 91 PQQLPAAEGMTVRELVAIGRYPWHGALGRFGAADREKVEEAISLVGLKPLAHRLVDSLSGGERQRAWIAMLVAQDSRCLL 170 (265)
T ss_pred ccCCCCCCCccHHHHHHhCcccccccccCCCHHHHHHHHHHHHHcCCHHHhcCCcccCCHHHHHHHHHHHHHhcCCCEEE
Confidence 999888887888888763110 0 0 0011 11233334556677778888888999999999
Q ss_pred cccccCCCCE
Q 006117 171 SEKLRPLIDL 180 (660)
Q Consensus 171 ~deLr~llDl 180 (660)
.||+...+|.
T Consensus 171 LDEPt~~LD~ 180 (265)
T PRK10575 171 LDEPTSALDI 180 (265)
T ss_pred EcCCcccCCH
Confidence 9999999997
No 156
>PRK14267 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.36 E-value=1.4e-12 Score=133.63 Aligned_cols=139 Identities=19% Similarity=0.152 Sum_probs=105.4
Q ss_pred ccceeeeecCceEEEEecceeeccCCcceEEEEECCCCCcHHHHHHHHHHhC-C-----CceEEEecCcccc--------
Q 006117 39 IEDTLSFEKGFFIVIRACQLLAQKNHGIILVGVAGPSGAGKTVFTEKVLNFM-P-----SIAVITMDNYNDS-------- 104 (660)
Q Consensus 39 ~~~~ls~~~g~~~vL~~Isl~i~~ge~~~IIGI~GpSGSGKSTLak~L~~lL-p-----~~g~I~lDg~~~~-------- 104 (660)
..+++++.++...++++++|.+.+|+ ++||+|+||||||||+++|++++ | ..|.|.++|....
T Consensus 6 ~~~~l~~~~~~~~~l~~is~~i~~Ge---~~~l~G~nGsGKSTLl~~l~G~~~~~~~~~~~G~i~~~g~~i~~~~~~~~~ 82 (253)
T PRK14267 6 ETVNLRVYYGSNHVIKGVDLKIPQNG---VFALMGPSGCGKSTLLRTFNRLLELNEEARVEGEVRLFGRNIYSPDVDPIE 82 (253)
T ss_pred EEEeEEEEeCCeeeeecceEEEcCCC---EEEEECCCCCCHHHHHHHHhccCCcccCCCCceEEEECCEEccccccChHH
Confidence 34566666666789999999999999 99999999999999999999998 4 3899999987532
Q ss_pred -cccccccCCCCCCCchhhHHHHHHhhh--cC-----cc-----------ccc-----ccccccccccccceeeecCCcc
Q 006117 105 -SRIIDGNFDDPRLTDYDTLLENIRGLK--EG-----KA-----------VQV-----PIYDFKSSSRIGYRTLEVPSSR 160 (660)
Q Consensus 105 -~~~i~~vfq~p~l~d~~tl~e~L~~L~--~G-----k~-----------I~~-----PiyD~s~~~rs~~~~~~v~~a~ 160 (660)
...+++++|++.+++..++.+++.... .+ +. +.. ...+......++++.+++..++
T Consensus 83 ~~~~i~~~~q~~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~LS~G~~qrv~lar 162 (253)
T PRK14267 83 VRREVGMVFQYPNPFPHLTIYDNVAIGVKLNGLVKSKKELDERVEWALKKAALWDEVKDRLNDYPSNLSGGQRQRLVIAR 162 (253)
T ss_pred HhhceeEEecCCccCCCCcHHHHHHHHHHhcCccCCHHHHHHHHHHHHHHcCCccchhhhhccChhhCCHHHHHHHHHHH
Confidence 134789999999988889999886421 11 00 000 0122223345566777788888
Q ss_pred EEEEecceeecccccCCCCE
Q 006117 161 IVIIEGIYALSEKLRPLIDL 180 (660)
Q Consensus 161 VVIVEGilaL~deLr~llDl 180 (660)
.++.++.+++.||+...+|.
T Consensus 163 al~~~p~llllDEP~~~LD~ 182 (253)
T PRK14267 163 ALAMKPKILLMDEPTANIDP 182 (253)
T ss_pred HHhcCCCEEEEcCCCccCCH
Confidence 89999999999999999997
No 157
>PRK11022 dppD dipeptide transporter ATP-binding subunit; Provisional
Probab=99.36 E-value=8.6e-13 Score=141.20 Aligned_cols=128 Identities=18% Similarity=0.270 Sum_probs=98.6
Q ss_pred eEEEEecceeeccCCcceEEEEECCCCCcHHHHHHHHHHhCC-----CceEEEecCccccc-----------ccccccCC
Q 006117 50 FIVIRACQLLAQKNHGIILVGVAGPSGAGKTVFTEKVLNFMP-----SIAVITMDNYNDSS-----------RIIDGNFD 113 (660)
Q Consensus 50 ~~vL~~Isl~i~~ge~~~IIGI~GpSGSGKSTLak~L~~lLp-----~~g~I~lDg~~~~~-----------~~i~~vfq 113 (660)
..+|++|||.+++|+ ++||+|+||||||||+++|+++++ ..|.|.++|.+... +.++++||
T Consensus 20 ~~~l~~vsl~i~~Ge---~~~lvG~sGsGKSTL~~~l~Gll~~~~~~~~G~i~~~G~~i~~~~~~~~~~~r~~~i~~v~Q 96 (326)
T PRK11022 20 FRAVDRISYSVKQGE---VVGIVGESGSGKSVSSLAIMGLIDYPGRVMAEKLEFNGQDLQRISEKERRNLVGAEVAMIFQ 96 (326)
T ss_pred EEEEeeeEEEECCCC---EEEEECCCCChHHHHHHHHHcCCCCCCCCcceEEEECCEECCcCCHHHHHHHhCCCEEEEec
Confidence 679999999999999 999999999999999999999983 67999999975321 24789999
Q ss_pred CCC--CCchhhHHHHHHh-hh--cC--------------cccccc----cccccccccccceeeecCCccEEEEecceee
Q 006117 114 DPR--LTDYDTLLENIRG-LK--EG--------------KAVQVP----IYDFKSSSRIGYRTLEVPSSRIVIIEGIYAL 170 (660)
Q Consensus 114 ~p~--l~d~~tl~e~L~~-L~--~G--------------k~I~~P----iyD~s~~~rs~~~~~~v~~a~VVIVEGilaL 170 (660)
++. +++..++.+++.. +. .+ +.+..+ ..+...++.++++.+++..+..++.++.+++
T Consensus 97 ~~~~~l~p~~~v~~~i~~~l~~~~~~~~~~~~~~~~~~L~~~gL~~~~~~l~~~p~~LSgGq~QRv~iArAL~~~P~lli 176 (326)
T PRK11022 97 DPMTSLNPCYTVGFQIMEAIKVHQGGNKKTRRQRAIDLLNQVGIPDPASRLDVYPHQLSGGMSQRVMIAMAIACRPKLLI 176 (326)
T ss_pred CchhhcCCcCCHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHCCCCChHHHHhCCchhCCHHHHHHHHHHHHHHhCCCEEE
Confidence 984 5665666554432 11 01 012221 2345566778888888999999999999999
Q ss_pred cccccCCCCE
Q 006117 171 SEKLRPLIDL 180 (660)
Q Consensus 171 ~deLr~llDl 180 (660)
.||+...+|.
T Consensus 177 lDEPts~LD~ 186 (326)
T PRK11022 177 ADEPTTALDV 186 (326)
T ss_pred EeCCCCCCCH
Confidence 9999999997
No 158
>PRK10762 D-ribose transporter ATP binding protein; Provisional
Probab=99.36 E-value=9.8e-13 Score=147.86 Aligned_cols=158 Identities=15% Similarity=0.087 Sum_probs=117.3
Q ss_pred cceeeeecCceEEEEecceeeccCCcceEEEEECCCCCcHHHHHHHHHHhC-CCceEEEecCcccc--------cccccc
Q 006117 40 EDTLSFEKGFFIVIRACQLLAQKNHGIILVGVAGPSGAGKTVFTEKVLNFM-PSIAVITMDNYNDS--------SRIIDG 110 (660)
Q Consensus 40 ~~~ls~~~g~~~vL~~Isl~i~~ge~~~IIGI~GpSGSGKSTLak~L~~lL-p~~g~I~lDg~~~~--------~~~i~~ 110 (660)
.+++++.++...++++++|.+.+|+ ++||+||||||||||+++|++++ |+.|.|.++|.... .+.+++
T Consensus 7 ~~~l~~~~~~~~~l~~is~~i~~Ge---~~~l~G~NGsGKSTLl~~l~G~~~p~~G~i~~~g~~~~~~~~~~~~~~~i~~ 83 (501)
T PRK10762 7 LKGIDKAFPGVKALSGAALNVYPGR---VMALVGENGAGKSTMMKVLTGIYTRDAGSILYLGKEVTFNGPKSSQEAGIGI 83 (501)
T ss_pred EeeeEEEeCCeEEeeeeeEEEcCCe---EEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEECCCCCHHHHHhCCEEE
Confidence 3555566666789999999999999 99999999999999999999998 78999999986432 134789
Q ss_pred cCCCCCCCchhhHHHHHHhhhc-----C----c----c-------cccc-cccccccccccceeeecCCccEEEEeccee
Q 006117 111 NFDDPRLTDYDTLLENIRGLKE-----G----K----A-------VQVP-IYDFKSSSRIGYRTLEVPSSRIVIIEGIYA 169 (660)
Q Consensus 111 vfq~p~l~d~~tl~e~L~~L~~-----G----k----~-------I~~P-iyD~s~~~rs~~~~~~v~~a~VVIVEGila 169 (660)
+||++.+++..++.+++..... + . . +..+ ..+...+..++++.+++..+..++.++.++
T Consensus 84 v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgG~~qrv~la~al~~~p~ll 163 (501)
T PRK10762 84 IHQELNLIPQLTIAENIFLGREFVNRFGRIDWKKMYAEADKLLARLNLRFSSDKLVGELSIGEQQMVEIAKVLSFESKVI 163 (501)
T ss_pred EEcchhccCCCcHHHHhhhccccccccCccCHHHHHHHHHHHHHHcCCCCCccCchhhCCHHHHHHHHHHHHHhcCCCEE
Confidence 9999988888899998854210 0 0 0 0011 123334556677888889999999999999
Q ss_pred ecccccCCCCEEEEEEcChhHHHHHHHHHHHHHhCCCH
Q 006117 170 LSEKLRPLIDLRVSVTGGVHFDLVKRVFRDIQRVGQEP 207 (660)
Q Consensus 170 L~deLr~llDlkIfVdad~dirLiRRI~RDv~eRGrs~ 207 (660)
+.||+...+|. .....+.++.+.....|.+.
T Consensus 164 lLDEPt~~LD~-------~~~~~l~~~l~~l~~~~~tv 194 (501)
T PRK10762 164 IMDEPTDALTD-------TETESLFRVIRELKSQGRGI 194 (501)
T ss_pred EEeCCcCCCCH-------HHHHHHHHHHHHHHHCCCEE
Confidence 99999999997 33444445555554445443
No 159
>PRK10070 glycine betaine transporter ATP-binding subunit; Provisional
Probab=99.36 E-value=6.7e-13 Score=145.80 Aligned_cols=131 Identities=18% Similarity=0.191 Sum_probs=104.5
Q ss_pred cCceEEEEecceeeccCCcceEEEEECCCCCcHHHHHHHHHHhC-CCceEEEecCcccc-----------cccccccCCC
Q 006117 47 KGFFIVIRACQLLAQKNHGIILVGVAGPSGAGKTVFTEKVLNFM-PSIAVITMDNYNDS-----------SRIIDGNFDD 114 (660)
Q Consensus 47 ~g~~~vL~~Isl~i~~ge~~~IIGI~GpSGSGKSTLak~L~~lL-p~~g~I~lDg~~~~-----------~~~i~~vfq~ 114 (660)
++...+++++||.+++|+ +++|+|+||||||||+++|++++ |..|.|.++|.... .+.++++||+
T Consensus 38 ~~~~~~L~~isl~i~~Ge---i~~LvG~NGsGKSTLLr~I~Gl~~p~sG~I~i~G~~i~~~~~~~l~~~~~~~igyv~Q~ 114 (400)
T PRK10070 38 TGLSLGVKDASLAIEEGE---IFVIMGLSGSGKSTMVRLLNRLIEPTRGQVLIDGVDIAKISDAELREVRRKKIAMVFQS 114 (400)
T ss_pred cCCeEEEEeEEEEEcCCC---EEEEECCCCchHHHHHHHHHcCCCCCCCEEEECCEECCcCCHHHHHHHHhCCEEEEECC
Confidence 356678999999999999 99999999999999999999998 89999999986432 1357899999
Q ss_pred CCCCchhhHHHHHHhhhc--Cc--------------cccc-ccccccccccccceeeecCCccEEEEecceeecccccCC
Q 006117 115 PRLTDYDTLLENIRGLKE--GK--------------AVQV-PIYDFKSSSRIGYRTLEVPSSRIVIIEGIYALSEKLRPL 177 (660)
Q Consensus 115 p~l~d~~tl~e~L~~L~~--Gk--------------~I~~-PiyD~s~~~rs~~~~~~v~~a~VVIVEGilaL~deLr~l 177 (660)
+.+|+..++.+++..... +. .+.. +..+...+..++++.+++..++.++.++.+++.||+...
T Consensus 115 ~~l~~~~Tv~enl~~~~~~~~~~~~~~~~~~~e~L~~~gL~~~~~~~~~~LSgGq~QRv~LArAL~~~P~iLLLDEPts~ 194 (400)
T PRK10070 115 FALMPHMTVLDNTAFGMELAGINAEERREKALDALRQVGLENYAHSYPDELSGGMRQRVGLARALAINPDILLMDEAFSA 194 (400)
T ss_pred CcCCCCCCHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCChhhhcCcccCCHHHHHHHHHHHHHhcCCCEEEEECCCcc
Confidence 999998999999864211 10 0111 122334455677788888889999999999999999999
Q ss_pred CCE
Q 006117 178 IDL 180 (660)
Q Consensus 178 lDl 180 (660)
+|.
T Consensus 195 LD~ 197 (400)
T PRK10070 195 LDP 197 (400)
T ss_pred CCH
Confidence 997
No 160
>COG0444 DppD ABC-type dipeptide/oligopeptide/nickel transport system, ATPase component [Amino acid transport and metabolism / Inorganic ion transport and metabolism]
Probab=99.36 E-value=1.1e-12 Score=138.45 Aligned_cols=202 Identities=16% Similarity=0.266 Sum_probs=141.1
Q ss_pred eeeeccceeeeecCceEEEEecceeeccCCcceEEEEECCCCCcHHHHHHHHHHhCC------CceEEEecCccc-----
Q 006117 35 EIVPIEDTLSFEKGFFIVIRACQLLAQKNHGIILVGVAGPSGAGKTVFTEKVLNFMP------SIAVITMDNYND----- 103 (660)
Q Consensus 35 ei~~~~~~ls~~~g~~~vL~~Isl~i~~ge~~~IIGI~GpSGSGKSTLak~L~~lLp------~~g~I~lDg~~~----- 103 (660)
++.++.-.|....+...++++|||.+.+|+ ++||+|.|||||||+++.|.+++| ..|.|.++|.+.
T Consensus 3 ~v~nL~v~f~~~~g~v~av~~vs~~i~~GE---~lgiVGESGsGKS~~~~aim~llp~~~~~i~~G~i~f~g~~l~~l~~ 79 (316)
T COG0444 3 EVKNLSVSFPTDAGVVKAVDGVSFELKKGE---ILGIVGESGSGKSVLAKAIMGLLPKPNARIVGGEILFDGKDLLSLSE 79 (316)
T ss_pred eEeeeEEEEecCCccEEEEeceeEEEcCCc---EEEEEcCCCCCHHHHHHHHHhccCCCCCeEeeeEEEECCcccccCCH
Confidence 344555556555667899999999999999 999999999999999999999995 257888998732
Q ss_pred ------ccccccccCCCCC--CCchhhHHHHHHhhhc---C---------------ccccc--c--ccccccccccccee
Q 006117 104 ------SSRIIDGNFDDPR--LTDYDTLLENIRGLKE---G---------------KAVQV--P--IYDFKSSSRIGYRT 153 (660)
Q Consensus 104 ------~~~~i~~vfq~p~--l~d~~tl~e~L~~L~~---G---------------k~I~~--P--iyD~s~~~rs~~~~ 153 (660)
..+.++++||+|. +.+..++.+.+..... + +.+.+ | +++...|+.+++..
T Consensus 80 ~~~~~iRG~~I~mIfQ~p~~sLnPv~~Ig~Qi~E~l~~h~~~~~~~ea~~~a~~~L~~Vgi~~~~~~~~~YPhelSGGMr 159 (316)
T COG0444 80 KELRKIRGKEIAMIFQDPMTSLNPVMTIGDQIAEVLRLHGKGLSKKEAKERAIELLELVGIPDPERRLKSYPHELSGGMR 159 (316)
T ss_pred HHHHhhcCceEEEEEcCchhhcCChhhHHHHHHHHHHHhhcchhhHHHHHHHHHHHHHcCCCCHHHHHhhCCcccCCcHH
Confidence 1245889999983 5666777666543211 0 11222 3 67778889999988
Q ss_pred eecCCccEEEEecceeecccccCCCCEEEEEEcChhHHHHHHHHHHHHHhCCCHHHHHHHHHhccccchhhcccCCcCcC
Q 006117 154 LEVPSSRIVIIEGIYALSEKLRPLIDLRVSVTGGVHFDLVKRVFRDIQRVGQEPEEIIHQISETVYPMYKAFIEPDLQTA 233 (660)
Q Consensus 154 ~~v~~a~VVIVEGilaL~deLr~llDlkIfVdad~dirLiRRI~RDv~eRGrs~E~Vl~qy~~~v~P~~~~fIeP~k~~A 233 (660)
+++-.+-.+..++.+++.||+...+|.. --..+-.+.+++.+ ....|
T Consensus 160 QRV~IAmala~~P~LlIADEPTTALDvt-------~QaqIl~Ll~~l~~--------------------------e~~~a 206 (316)
T COG0444 160 QRVMIAMALALNPKLLIADEPTTALDVT-------VQAQILDLLKELQR--------------------------EKGTA 206 (316)
T ss_pred HHHHHHHHHhCCCCEEEeCCCcchhhHH-------HHHHHHHHHHHHHH--------------------------hcCCE
Confidence 8888888899999999999999999873 11111222222211 11344
Q ss_pred cEEEeCCCCCCCCCCCceEEeccCCCccHHHHHHHhccc
Q 006117 234 HIKIINKFNPFTGFQNPTYILKSTRPVTVDEIKAVMSKE 272 (660)
Q Consensus 234 DiII~N~~~p~~g~~n~v~iLKsa~~v~~~~IravL~~~ 272 (660)
=+.|.+|.......++.++|.+++.-+..+...++|.+.
T Consensus 207 iilITHDl~vva~~aDri~VMYaG~iVE~g~~~~i~~~P 245 (316)
T COG0444 207 LILITHDLGVVAEIADRVAVMYAGRIVEEGPVEEIFKNP 245 (316)
T ss_pred EEEEeCCHHHHHHhcceEEEEECcEEEEeCCHHHHhcCC
Confidence 566667776667777777777777666666666666543
No 161
>PRK13631 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=99.35 E-value=1e-12 Score=140.40 Aligned_cols=157 Identities=15% Similarity=0.127 Sum_probs=112.1
Q ss_pred cceeeeecCc-----eEEEEecceeeccCCcceEEEEECCCCCcHHHHHHHHHHhC-CCceEEEecCcccc---------
Q 006117 40 EDTLSFEKGF-----FIVIRACQLLAQKNHGIILVGVAGPSGAGKTVFTEKVLNFM-PSIAVITMDNYNDS--------- 104 (660)
Q Consensus 40 ~~~ls~~~g~-----~~vL~~Isl~i~~ge~~~IIGI~GpSGSGKSTLak~L~~lL-p~~g~I~lDg~~~~--------- 104 (660)
.+++++.++. ..+|++++|.+++|+ ++||+|+||||||||+++|++++ |..|.|.++|....
T Consensus 24 ~~nl~~~y~~~~~~~~~~L~~vsl~i~~Ge---~~~I~G~nGsGKSTLl~~L~Gl~~p~~G~I~i~g~~~~~~~~~~~~~ 100 (320)
T PRK13631 24 VKNLYCVFDEKQENELVALNNISYTFEKNK---IYFIIGNSGSGKSTLVTHFNGLIKSKYGTIQVGDIYIGDKKNNHELI 100 (320)
T ss_pred EEeEEEEeCCCCcccccceeeeEEEEcCCC---EEEEECCCCCCHHHHHHHHhCCCCCCCCeEEECCEEccccccccccc
Confidence 3445555432 369999999999999 99999999999999999999998 78999999985321
Q ss_pred --------------cccccccCCCC--CCCchhhHHHHHHhhhc--Cc--------------ccccc--ccccccccccc
Q 006117 105 --------------SRIIDGNFDDP--RLTDYDTLLENIRGLKE--GK--------------AVQVP--IYDFKSSSRIG 150 (660)
Q Consensus 105 --------------~~~i~~vfq~p--~l~d~~tl~e~L~~L~~--Gk--------------~I~~P--iyD~s~~~rs~ 150 (660)
.+.++++||+| .+++ .++.+++..... +. .+..+ ..+......++
T Consensus 101 ~~~~~~~~~~~~~~~~~ig~v~Q~~~~~l~~-~tv~eni~~~~~~~~~~~~~~~~~~~~~l~~~gL~~~~~~~~~~~LSg 179 (320)
T PRK13631 101 TNPYSKKIKNFKELRRRVSMVFQFPEYQLFK-DTIEKDIMFGPVALGVKKSEAKKLAKFYLNKMGLDDSYLERSPFGLSG 179 (320)
T ss_pred ccccccccchHHHHHhcEEEEEECchhcccc-chHHHHHHhhHHhcCCCHHHHHHHHHHHHHHcCCChhHhcCCcccCCH
Confidence 13478999988 3555 488888753210 10 01111 12333445667
Q ss_pred ceeeecCCccEEEEecceeecccccCCCCEEEEEEcChhHHHHHHHHHHHHHhCCCH
Q 006117 151 YRTLEVPSSRIVIIEGIYALSEKLRPLIDLRVSVTGGVHFDLVKRVFRDIQRVGQEP 207 (660)
Q Consensus 151 ~~~~~v~~a~VVIVEGilaL~deLr~llDlkIfVdad~dirLiRRI~RDv~eRGrs~ 207 (660)
++.+++..+++++.++.+++.||+...+|. ...+.+..+.++..++|.+.
T Consensus 180 GqkqRvaiAraL~~~p~iLLLDEPtsgLD~-------~~~~~l~~~L~~l~~~g~Ti 229 (320)
T PRK13631 180 GQKRRVAIAGILAIQPEILIFDEPTAGLDP-------KGEHEMMQLILDAKANNKTV 229 (320)
T ss_pred HHHHHHHHHHHHHcCCCEEEEECCccCCCH-------HHHHHHHHHHHHHHHCCCEE
Confidence 788888999999999999999999999997 34444555555554456554
No 162
>PRK09984 phosphonate/organophosphate ester transporter subunit; Provisional
Probab=99.35 E-value=1.2e-12 Score=134.96 Aligned_cols=157 Identities=18% Similarity=0.196 Sum_probs=113.6
Q ss_pred cceeeeecCceEEEEecceeeccCCcceEEEEECCCCCcHHHHHHHHHHhC-CC---ceEEEecCcccc-----------
Q 006117 40 EDTLSFEKGFFIVIRACQLLAQKNHGIILVGVAGPSGAGKTVFTEKVLNFM-PS---IAVITMDNYNDS----------- 104 (660)
Q Consensus 40 ~~~ls~~~g~~~vL~~Isl~i~~ge~~~IIGI~GpSGSGKSTLak~L~~lL-p~---~g~I~lDg~~~~----------- 104 (660)
.+++++.++...++++++|.+.+|+ +++|+|+||||||||+++|++.+ |+ .|.|.++|....
T Consensus 7 ~~nl~~~~~~~~il~~vs~~i~~Ge---~~~i~G~nGsGKSTLl~~i~G~~~p~~~~~G~i~~~g~~~~~~~~~~~~~~~ 83 (262)
T PRK09984 7 VEKLAKTFNQHQALHAVDLNIHHGE---MVALLGPSGSGKSTLLRHLSGLITGDKSAGSHIELLGRTVQREGRLARDIRK 83 (262)
T ss_pred EeeEEEEeCCeEEEecceEEEcCCc---EEEEECCCCCCHHHHHHHHhccCCCCCCCceEEEECCEecccccccchhHHH
Confidence 3455555566789999999999999 99999999999999999999998 54 499999996432
Q ss_pred -cccccccCCCCCCCchhhHHHHHHhhhcC-------------c----c-------ccc-ccccccccccccceeeecCC
Q 006117 105 -SRIIDGNFDDPRLTDYDTLLENIRGLKEG-------------K----A-------VQV-PIYDFKSSSRIGYRTLEVPS 158 (660)
Q Consensus 105 -~~~i~~vfq~p~l~d~~tl~e~L~~L~~G-------------k----~-------I~~-PiyD~s~~~rs~~~~~~v~~ 158 (660)
.+.++++||++.+++..++.+++...... . . ... ...+...+..++++.+++..
T Consensus 84 ~~~~i~~~~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~l 163 (262)
T PRK09984 84 SRANTGYIFQQFNLVNRLSVLENVLIGALGSTPFWRTCFSWFTREQKQRALQALTRVGMVHFAHQRVSTLSGGQQQRVAI 163 (262)
T ss_pred HHhheEEEccccccccCCcHHHHHHhhhcccccchhhhcccccHHHHHHHHHHHHHcCCHHHHhCCccccCHHHHHHHHH
Confidence 12478999999988888999888632100 0 0 111 11233344456677778888
Q ss_pred ccEEEEecceeecccccCCCCEEEEEEcChhHHHHHHHHHHHHH-hCCC
Q 006117 159 SRIVIIEGIYALSEKLRPLIDLRVSVTGGVHFDLVKRVFRDIQR-VGQE 206 (660)
Q Consensus 159 a~VVIVEGilaL~deLr~llDlkIfVdad~dirLiRRI~RDv~e-RGrs 206 (660)
++.++.++.+++.||+...+|. ...+.+..+.++... .|.+
T Consensus 164 aral~~~p~llllDEPt~~LD~-------~~~~~l~~~l~~~~~~~g~t 205 (262)
T PRK09984 164 ARALMQQAKVILADEPIASLDP-------ESARIVMDTLRDINQNDGIT 205 (262)
T ss_pred HHHHhcCCCEEEecCccccCCH-------HHHHHHHHHHHHHHHhcCCE
Confidence 8889999999999999999997 344445555555543 3544
No 163
>TIGR03005 ectoine_ehuA ectoine/hydroxyectoine ABC transporter, ATP-binding protein. Members of this family are the ATP-binding protein of a conserved four gene ABC transporter operon found next to ectoine unilization operons and ectoine biosynthesis operons. Ectoine is a compatible solute that protects enzymes from high osmolarity. It is released by some species in response to hypoosmotic shock, and it is taken up by a number of bacteria as a compatible solute or for consumption. This family shows strong sequence similiarity to a number of amino acid ABC transporter ATP-binding proteins.
Probab=99.35 E-value=1.2e-12 Score=134.19 Aligned_cols=137 Identities=18% Similarity=0.210 Sum_probs=104.2
Q ss_pred ceeeeecCceEEEEecceeeccCCcceEEEEECCCCCcHHHHHHHHHHhC-CCceEEEecCcccc---------------
Q 006117 41 DTLSFEKGFFIVIRACQLLAQKNHGIILVGVAGPSGAGKTVFTEKVLNFM-PSIAVITMDNYNDS--------------- 104 (660)
Q Consensus 41 ~~ls~~~g~~~vL~~Isl~i~~ge~~~IIGI~GpSGSGKSTLak~L~~lL-p~~g~I~lDg~~~~--------------- 104 (660)
+++++.++...++++++|.+++|+ ++||+|+||||||||+++|++++ |..|.|.++|....
T Consensus 4 ~~l~~~~~~~~~l~~vs~~i~~Ge---~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~i~~~~~~~~~~~~~~~~ 80 (252)
T TIGR03005 4 SDVTKRFGILTVLDGLNFSVAAGE---KVALIGPSGSGKSTILRILMTLEPIDEGQIQVEGEQLYHMPGRNGPLVPADEK 80 (252)
T ss_pred EEEEEEeCCeeEEeeeeEEEcCCC---EEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEEccccccccccccccchh
Confidence 445566666789999999999999 99999999999999999999998 78999999986431
Q ss_pred -----cccccccCCCCCCCchhhHHHHHHhhh---cCc--------------cccc-ccccccccccccceeeecCCccE
Q 006117 105 -----SRIIDGNFDDPRLTDYDTLLENIRGLK---EGK--------------AVQV-PIYDFKSSSRIGYRTLEVPSSRI 161 (660)
Q Consensus 105 -----~~~i~~vfq~p~l~d~~tl~e~L~~L~---~Gk--------------~I~~-PiyD~s~~~rs~~~~~~v~~a~V 161 (660)
.+.++++||++.+++..++.+++.... .+. .+.. +..+......++++.+++..++.
T Consensus 81 ~~~~~~~~i~~v~q~~~~~~~~tv~~nl~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~LS~G~~qrv~lara 160 (252)
T TIGR03005 81 HLRQMRNKIGMVFQSFNLFPHKTVLDNVTEAPVLVLGMARAEAEKRAMELLDMVGLADKADHMPAQLSGGQQQRVAIARA 160 (252)
T ss_pred HHHHHhhCeEEEecCcccCCCCcHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCChhHhhcChhhcCHHHHHHHHHHHH
Confidence 234788999998888888888886421 010 0001 11222333455667777888888
Q ss_pred EEEecceeecccccCCCCE
Q 006117 162 VIIEGIYALSEKLRPLIDL 180 (660)
Q Consensus 162 VIVEGilaL~deLr~llDl 180 (660)
++.++.+++.||+...+|.
T Consensus 161 l~~~p~llllDEP~~~LD~ 179 (252)
T TIGR03005 161 LAMRPKVMLFDEVTSALDP 179 (252)
T ss_pred HHcCCCEEEEeCCcccCCH
Confidence 9999999999999999997
No 164
>COG4598 HisP ABC-type histidine transport system, ATPase component [Amino acid transport and metabolism]
Probab=99.35 E-value=6e-13 Score=130.44 Aligned_cols=165 Identities=21% Similarity=0.252 Sum_probs=124.4
Q ss_pred cceeeeecCceEEEEecceeeccCCcceEEEEECCCCCcHHHHHHHHHHhC-CCceEEEecCcccc--------------
Q 006117 40 EDTLSFEKGFFIVIRACQLLAQKNHGIILVGVAGPSGAGKTVFTEKVLNFM-PSIAVITMDNYNDS-------------- 104 (660)
Q Consensus 40 ~~~ls~~~g~~~vL~~Isl~i~~ge~~~IIGI~GpSGSGKSTLak~L~~lL-p~~g~I~lDg~~~~-------------- 104 (660)
.+.+...+|...+|++||+...+|+ +|.|+|.||||||||++||.-+- |..|.|...|....
T Consensus 9 v~dlHK~~G~~eVLKGvSL~A~~Gd---VisIIGsSGSGKSTfLRCiN~LE~P~~G~I~v~geei~~k~~~~G~l~~ad~ 85 (256)
T COG4598 9 VEDLHKRYGEHEVLKGVSLQANAGD---VISIIGSSGSGKSTFLRCINFLEKPSAGSIRVNGEEIRLKRDKDGQLKPADK 85 (256)
T ss_pred hhHHHhhcccchhhcceeeecCCCC---EEEEecCCCCchhHHHHHHHhhcCCCCceEEECCeEEEeeeCCCCCeeeCCH
Confidence 3455556688899999999999999 99999999999999999998776 89999999885211
Q ss_pred ------cccccccCCCCCCCchhhHHHHHHhhh-------cCcccc--------ccc---ccccccccccceeeecCCcc
Q 006117 105 ------SRIIDGNFDDPRLTDYDTLLENIRGLK-------EGKAVQ--------VPI---YDFKSSSRIGYRTLEVPSSR 160 (660)
Q Consensus 105 ------~~~i~~vfq~p~l~d~~tl~e~L~~L~-------~Gk~I~--------~Pi---yD~s~~~rs~~~~~~v~~a~ 160 (660)
+...+++||++++|..+++.+|+-.-. +.+.++ +-+ .+......++++.+++..++
T Consensus 86 ~q~~r~Rs~L~mVFQ~FNLWsHmtvLeNViEaPvhVLg~~k~ea~e~Ae~~L~kVGi~ek~~~YP~~LSGGQQQR~aIAR 165 (256)
T COG4598 86 RQLQRLRTRLGMVFQHFNLWSHMTVLENVIEAPVHVLGVSKAEAIERAEKYLAKVGIAEKADAYPAHLSGGQQQRVAIAR 165 (256)
T ss_pred HHHHHHHHHhhHhhhhcchhHHHHHHHHHHhcchHhhcCCHHHHHHHHHHHHHHhCchhhhhcCccccCchHHHHHHHHH
Confidence 023678999999999999999975311 011000 011 12223345677888899999
Q ss_pred EEEEecceeecccccCCCCEEEEEEcChhHHHHHHHHHHHHHhCCCHHHHHHHH
Q 006117 161 IVIIEGIYALSEKLRPLIDLRVSVTGGVHFDLVKRVFRDIQRVGQEPEEIIHQI 214 (660)
Q Consensus 161 VVIVEGilaL~deLr~llDlkIfVdad~dirLiRRI~RDv~eRGrs~E~Vl~qy 214 (660)
.+.+|+..++.||+...+|. +-+--.-++.|++.+.|+|.--|.+.+
T Consensus 166 aLameP~vmLFDEPTSALDP-------ElVgEVLkv~~~LAeEgrTMv~VTHEM 212 (256)
T COG4598 166 ALAMEPEVMLFDEPTSALDP-------ELVGEVLKVMQDLAEEGRTMVVVTHEM 212 (256)
T ss_pred HHhcCCceEeecCCcccCCH-------HHHHHHHHHHHHHHHhCCeEEEEeeeh
Confidence 99999999999999999985 334445678899999999875555544
No 165
>TIGR03873 F420-0_ABC_ATP proposed F420-0 ABC transporter, ATP-binding protein. This small clade of ABC-type transporter ATP-binding protein components is found as a three gene cassette along with a periplasmic substrate-binding protein (TIGR03868) and a permease (TIGR03869). The organisms containing this cassette are all Actinobacteria and all contain numerous genes requiring the coenzyme F420. This model was defined based on five such organisms, four of which are lacking all F420 biosynthetic capability save the final side-chain polyglutamate attachment step (via the gene cofE: TIGR01916). In Jonesia denitrificans DSM 20603 and marine actinobacterium PHSC20C1 this cassette is in an apparent operon with the cofE gene and, in PHSC20C1, also with a F420-dependent glucose-6-phosphate dehydrogenase (TIGR03554). Based on these observations we propose that this ATP-binding protein is a component of an F420-0 (that is, F420 lacking only the polyglutamate tail) transporter.
Probab=99.35 E-value=1.4e-12 Score=133.99 Aligned_cols=137 Identities=16% Similarity=0.208 Sum_probs=102.9
Q ss_pred ceeeeecCceEEEEecceeeccCCcceEEEEECCCCCcHHHHHHHHHHhC-CCceEEEecCcccc-------cccccccC
Q 006117 41 DTLSFEKGFFIVIRACQLLAQKNHGIILVGVAGPSGAGKTVFTEKVLNFM-PSIAVITMDNYNDS-------SRIIDGNF 112 (660)
Q Consensus 41 ~~ls~~~g~~~vL~~Isl~i~~ge~~~IIGI~GpSGSGKSTLak~L~~lL-p~~g~I~lDg~~~~-------~~~i~~vf 112 (660)
+++++.++...++++++|.+++|+ ++||+|+||||||||+++|++.+ |..|.|.++|.... .+.+++++
T Consensus 5 ~~l~~~~~~~~il~~is~~i~~Ge---~~~i~G~nGsGKSTLl~~i~G~~~~~~G~i~~~g~~~~~~~~~~~~~~i~~~~ 81 (256)
T TIGR03873 5 SRVSWSAGGRLIVDGVDVTAPPGS---LTGLLGPNGSGKSTLLRLLAGALRPDAGTVDLAGVDLHGLSRRARARRVALVE 81 (256)
T ss_pred EeEEEEECCEEEEeeeeEEEcCCc---EEEEECCCCCCHHHHHHHHcCCCCCCCCEEEECCEEcccCCHHHHhhheEEec
Confidence 445555566789999999999999 99999999999999999999998 78999999996432 13478899
Q ss_pred CCCCCCchhhHHHHHHhhh--c----C----c---c-------ccc-ccccccccccccceeeecCCccEEEEecceeec
Q 006117 113 DDPRLTDYDTLLENIRGLK--E----G----K---A-------VQV-PIYDFKSSSRIGYRTLEVPSSRIVIIEGIYALS 171 (660)
Q Consensus 113 q~p~l~d~~tl~e~L~~L~--~----G----k---~-------I~~-PiyD~s~~~rs~~~~~~v~~a~VVIVEGilaL~ 171 (660)
|++..+...++.+++.... . + . . +.. ...+......++++..++..+..++.++.+++.
T Consensus 82 q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrl~la~al~~~p~llll 161 (256)
T TIGR03873 82 QDSDTAVPLTVRDVVALGRIPHRSLWAGDSPHDAAVVDRALARTELSHLADRDMSTLSGGERQRVHVARALAQEPKLLLL 161 (256)
T ss_pred ccCccCCCCCHHHHHHhcchhhhhhccCCCHHHHHHHHHHHHHcCcHhhhcCCcccCCHHHHHHHHHHHHHhcCCCEEEE
Confidence 9987777778888875421 0 0 0 0 000 112233344556677778888889999999999
Q ss_pred ccccCCCCE
Q 006117 172 EKLRPLIDL 180 (660)
Q Consensus 172 deLr~llDl 180 (660)
||+...+|.
T Consensus 162 DEPt~~LD~ 170 (256)
T TIGR03873 162 DEPTNHLDV 170 (256)
T ss_pred cCccccCCH
Confidence 999999997
No 166
>cd03217 ABC_FeS_Assembly ABC-type transport system involved in Fe-S cluster assembly, ATPase component. Biosynthesis of iron-sulfur clusters (Fe-S) depends on multiprotein systems. The SUF system of E. coli and Erwinia chrysanthemi is important for Fe-S biogenesis under stressful conditions. The SUF system is made of six proteins: SufC is an atypical cytoplasmic ABC-ATPase, which forms a complex with SufB and SufD; SufA plays the role of a scaffold protein for assembly of iron-sulfur clusters and delivery to target proteins; SufS is a cysteine desulfurase which mobilizes the sulfur atom from cysteine and provides it to the cluster; SufE has no associated function yet.
Probab=99.35 E-value=1.2e-12 Score=130.07 Aligned_cols=141 Identities=16% Similarity=0.196 Sum_probs=105.6
Q ss_pred eeeeecCceEEEEecceeeccCCcceEEEEECCCCCcHHHHHHHHHHh--C-CCceEEEecCccccc--------ccccc
Q 006117 42 TLSFEKGFFIVIRACQLLAQKNHGIILVGVAGPSGAGKTVFTEKVLNF--M-PSIAVITMDNYNDSS--------RIIDG 110 (660)
Q Consensus 42 ~ls~~~g~~~vL~~Isl~i~~ge~~~IIGI~GpSGSGKSTLak~L~~l--L-p~~g~I~lDg~~~~~--------~~i~~ 110 (660)
++++.++...++++++|.+.+|+ +++|+|+||||||||+++|++. + |..|.|.+||..... ..+++
T Consensus 5 ~l~~~~~~~~~l~~is~~i~~Ge---~~~i~G~nGsGKStLl~~l~G~~~~~p~~G~i~~~g~~~~~~~~~~~~~~~i~~ 81 (200)
T cd03217 5 DLHVSVGGKEILKGVNLTIKKGE---VHALMGPNGSGKSTLAKTIMGHPKYEVTEGEILFKGEDITDLPPEERARLGIFL 81 (200)
T ss_pred EEEEEeCCEEeeeccceEECCCc---EEEEECCCCCCHHHHHHHHhCCCcCCCCccEEEECCEECCcCCHHHHhhCcEEE
Confidence 44455555679999999999999 9999999999999999999998 4 789999999964321 23778
Q ss_pred cCCCCCCCchhhHHHHHHhhhcCcccccccccccccccccceeeecCCccEEEEecceeecccccCCCCEEEEEEcChhH
Q 006117 111 NFDDPRLTDYDTLLENIRGLKEGKAVQVPIYDFKSSSRIGYRTLEVPSSRIVIIEGIYALSEKLRPLIDLRVSVTGGVHF 190 (660)
Q Consensus 111 vfq~p~l~d~~tl~e~L~~L~~Gk~I~~PiyD~s~~~rs~~~~~~v~~a~VVIVEGilaL~deLr~llDlkIfVdad~di 190 (660)
++|++.+++..++.+++... ....++++.+++..++.++.++.+++.||+...+|. ...
T Consensus 82 v~q~~~~~~~~~~~~~l~~~--------------~~~LS~G~~qrv~laral~~~p~illlDEPt~~LD~-------~~~ 140 (200)
T cd03217 82 AFQYPPEIPGVKNADFLRYV--------------NEGFSGGEKKRNEILQLLLLEPDLAILDEPDSGLDI-------DAL 140 (200)
T ss_pred eecChhhccCccHHHHHhhc--------------cccCCHHHHHHHHHHHHHhcCCCEEEEeCCCccCCH-------HHH
Confidence 99999888877887776211 123445666777788888889999999999999996 333
Q ss_pred HHHHHHHHHHHHhCCC
Q 006117 191 DLVKRVFRDIQRVGQE 206 (660)
Q Consensus 191 rLiRRI~RDv~eRGrs 206 (660)
+....+.++..+.|.+
T Consensus 141 ~~l~~~L~~~~~~~~t 156 (200)
T cd03217 141 RLVAEVINKLREEGKS 156 (200)
T ss_pred HHHHHHHHHHHHCCCE
Confidence 3444444444444444
No 167
>PRK14273 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.35 E-value=8.2e-13 Score=135.51 Aligned_cols=136 Identities=20% Similarity=0.202 Sum_probs=103.0
Q ss_pred ceeeeecCceEEEEecceeeccCCcceEEEEECCCCCcHHHHHHHHHHhC-C-----CceEEEecCcccc---------c
Q 006117 41 DTLSFEKGFFIVIRACQLLAQKNHGIILVGVAGPSGAGKTVFTEKVLNFM-P-----SIAVITMDNYNDS---------S 105 (660)
Q Consensus 41 ~~ls~~~g~~~vL~~Isl~i~~ge~~~IIGI~GpSGSGKSTLak~L~~lL-p-----~~g~I~lDg~~~~---------~ 105 (660)
+++++.++...++++++|.+++|+ +++|+|+||||||||+++|++++ | ..|.|.++|.... .
T Consensus 11 ~~l~~~~~~~~il~~vs~~i~~Ge---~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~i~~~g~~i~~~~~~~~~~~ 87 (254)
T PRK14273 11 ENLNLFYTDFKALNNINIKILKNS---ITALIGPSGCGKSTFLRTLNRMNDLVEGIKIEGNVIYEGKNIYSNNFDILELR 87 (254)
T ss_pred eeeEEEeCCceeecceeeEEcCCC---EEEEECCCCCCHHHHHHHHhccccCCcCCCCceEEEECCEecccccccHHHHh
Confidence 444555555679999999999999 99999999999999999999998 4 3899999986431 1
Q ss_pred ccccccCCCCCCCchhhHHHHHHhhhc--Cc----c----c-------cc-----ccccccccccccceeeecCCccEEE
Q 006117 106 RIIDGNFDDPRLTDYDTLLENIRGLKE--GK----A----V-------QV-----PIYDFKSSSRIGYRTLEVPSSRIVI 163 (660)
Q Consensus 106 ~~i~~vfq~p~l~d~~tl~e~L~~L~~--Gk----~----I-------~~-----PiyD~s~~~rs~~~~~~v~~a~VVI 163 (660)
+.+++++|++.+++ .++.+++..... +. . + .. ..++......++++.+++..++.++
T Consensus 88 ~~i~~v~q~~~~~~-~tv~eni~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~l~~~~~~~~~~LSgG~~qrv~laral~ 166 (254)
T PRK14273 88 RKIGMVFQTPNPFL-MSIYDNISYGPKIHGTKDKKKLDEIVEQSLKKSALWNEVKDKLNTNALSLSGGQQQRLCIARTLA 166 (254)
T ss_pred hceEEEeecccccc-CcHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHhCCchhhHHHHhCCcccCCHHHHHHHHHHHHHH
Confidence 34789999998885 788888853211 10 0 0 00 1233334456667788888889999
Q ss_pred EecceeecccccCCCCE
Q 006117 164 IEGIYALSEKLRPLIDL 180 (660)
Q Consensus 164 VEGilaL~deLr~llDl 180 (660)
.++.+++.||+...+|.
T Consensus 167 ~~p~lllLDEPt~~LD~ 183 (254)
T PRK14273 167 IEPNVILMDEPTSALDP 183 (254)
T ss_pred cCCCEEEEeCCCcccCH
Confidence 99999999999999997
No 168
>PRK15093 antimicrobial peptide ABC transporter ATP-binding protein; Provisional
Probab=99.35 E-value=1.2e-12 Score=140.18 Aligned_cols=130 Identities=11% Similarity=0.173 Sum_probs=100.0
Q ss_pred CceEEEEecceeeccCCcceEEEEECCCCCcHHHHHHHHHHhCC-----CceEEEecCccccc-----------cccccc
Q 006117 48 GFFIVIRACQLLAQKNHGIILVGVAGPSGAGKTVFTEKVLNFMP-----SIAVITMDNYNDSS-----------RIIDGN 111 (660)
Q Consensus 48 g~~~vL~~Isl~i~~ge~~~IIGI~GpSGSGKSTLak~L~~lLp-----~~g~I~lDg~~~~~-----------~~i~~v 111 (660)
+...+++++||.+.+|+ ++||+|+||||||||+++|+++++ +.|.|.++|..... +.++++
T Consensus 18 ~~~~~l~~vsl~i~~Ge---~~~ivG~sGsGKSTLl~~i~Gl~~~~~~~~~G~i~~~g~~i~~~~~~~~~~~~~~~i~~v 94 (330)
T PRK15093 18 GWVKAVDRVSMTLTEGE---IRGLVGESGSGKSLIAKAICGVTKDNWRVTADRMRFDDIDLLRLSPRERRKLVGHNVSMI 94 (330)
T ss_pred CCEEEEeeeEEEECCCC---EEEEECCCCCCHHHHHHHHHccCCCCCCCcceEEEECCEECCcCCHHHHHHHhCCCEEEE
Confidence 55789999999999999 999999999999999999999983 68999999974321 257899
Q ss_pred CCCCC--CCchhhHHHHHHhh-h----cC-----------------cccccc----cccccccccccceeeecCCccEEE
Q 006117 112 FDDPR--LTDYDTLLENIRGL-K----EG-----------------KAVQVP----IYDFKSSSRIGYRTLEVPSSRIVI 163 (660)
Q Consensus 112 fq~p~--l~d~~tl~e~L~~L-~----~G-----------------k~I~~P----iyD~s~~~rs~~~~~~v~~a~VVI 163 (660)
||++. +++..++.+++... . .+ +.+..+ ..+...+..++++.+++..+..++
T Consensus 95 ~Q~~~~~l~p~~tv~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~gL~~~~~~~~~~p~~LSgG~~QRv~iArAL~ 174 (330)
T PRK15093 95 FQEPQSCLDPSERVGRQLMQNIPGWTYKGRWWQRFGWRKRRAIELLHRVGIKDHKDAMRSFPYELTEGECQKVMIAIALA 174 (330)
T ss_pred ecCcchhcCccccHHHHHHHHHHhhhccccccccHHHHHHHHHHHHHHCCCCChHHHHhCCchhCCHHHHHHHHHHHHHH
Confidence 99986 45666777766431 0 00 001111 123445567778888899999999
Q ss_pred EecceeecccccCCCCE
Q 006117 164 IEGIYALSEKLRPLIDL 180 (660)
Q Consensus 164 VEGilaL~deLr~llDl 180 (660)
.++.+++.||+...+|.
T Consensus 175 ~~P~llilDEPts~LD~ 191 (330)
T PRK15093 175 NQPRLLIADEPTNAMEP 191 (330)
T ss_pred CCCCEEEEeCCCCcCCH
Confidence 99999999999999997
No 169
>cd02022 DPCK Dephospho-coenzyme A kinase (DPCK, EC 2.7.1.24) catalyzes the phosphorylation of dephosphocoenzyme A (dCoA) to yield CoA, which is the final step in CoA biosynthesis.
Probab=99.35 E-value=1.4e-12 Score=127.64 Aligned_cols=161 Identities=20% Similarity=0.271 Sum_probs=108.4
Q ss_pred EEEEECCCCCcHHHHHHHHHHhCCCceEEEecCcccc--c------ccc----cc-cCCCCCCCchhhHHHHHHh----h
Q 006117 68 LVGVAGPSGAGKTVFTEKVLNFMPSIAVITMDNYNDS--S------RII----DG-NFDDPRLTDYDTLLENIRG----L 130 (660)
Q Consensus 68 IIGI~GpSGSGKSTLak~L~~lLp~~g~I~lDg~~~~--~------~~i----~~-vfq~p~l~d~~tl~e~L~~----L 130 (660)
+|||+|+.||||||+++.|.. + +...|+.|..... . ..+ +. ++......|...+.+.+.. +
T Consensus 1 ii~itG~~gsGKst~~~~l~~-~-g~~~i~~D~~~~~~~~~~~~~~~~i~~~fg~~~~~~~g~idr~~L~~~vf~~~~~~ 78 (179)
T cd02022 1 IIGLTGGIGSGKSTVAKLLKE-L-GIPVIDADKIAHEVYEPGGPALQAIVEAFGPDILLEDGELDRKKLGEIVFADPEKR 78 (179)
T ss_pred CEEEECCCCCCHHHHHHHHHH-C-CCCEEecCHHHHhhhhcccHHHHHHHHHcCcceeCCCCcCCHHHHHHHHhCCHHHH
Confidence 589999999999999999998 4 5668888875211 0 001 10 1112234555555555543 2
Q ss_pred hcCcccccccccccccccccceeeecCCccEEEEecceeecccccCCCCEEEEEEcChhHHHHHHHHHHHHHhCCCHHHH
Q 006117 131 KEGKAVQVPIYDFKSSSRIGYRTLEVPSSRIVIIEGIYALSEKLRPLIDLRVSVTGGVHFDLVKRVFRDIQRVGQEPEEI 210 (660)
Q Consensus 131 ~~Gk~I~~PiyD~s~~~rs~~~~~~v~~a~VVIVEGilaL~deLr~llDlkIfVdad~dirLiRRI~RDv~eRGrs~E~V 210 (660)
..-+.+.+|.+......... ......++++|+++++...+...+|..|||++|.++++.|.+.|+ |.+.+++
T Consensus 79 ~~l~~i~hp~i~~~~~~~~~----~~~~~~~vive~plL~e~~~~~~~D~vv~V~a~~~~ri~Rl~~Rd----~~s~~~~ 150 (179)
T cd02022 79 KKLEAITHPLIRKEIEEQLA----EARKEKVVVLDIPLLFETGLEKLVDRVIVVDAPPEIQIERLMKRD----GLSEEEA 150 (179)
T ss_pred HHHHHHHHHHHHHHHHHHHH----HccCCCEEEEEehHhhcCCcHHhCCeEEEEECCHHHHHHHHHHcC----CCCHHHH
Confidence 23355667765544433221 112236899999999988888999999999999988776666554 8899998
Q ss_pred HHHHHhccccchhhcccCCcCcCcEEEeCCCCCC
Q 006117 211 IHQISETVYPMYKAFIEPDLQTAHIKIINKFNPF 244 (660)
Q Consensus 211 l~qy~~~v~P~~~~fIeP~k~~ADiII~N~~~p~ 244 (660)
..++..+ ++. ++.+..||+||.|+.+.+
T Consensus 151 ~~r~~~Q-~~~-----~~~~~~aD~vI~N~~~~~ 178 (179)
T cd02022 151 EARIASQ-MPL-----EEKRARADFVIDNSGSLE 178 (179)
T ss_pred HHHHHhc-CCH-----HHHHHhCCEEEECcCCCC
Confidence 8888553 332 245689999999987653
No 170
>PRK13647 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=99.35 E-value=1.1e-12 Score=136.82 Aligned_cols=157 Identities=13% Similarity=0.142 Sum_probs=113.7
Q ss_pred ceeeeecC-ceEEEEecceeeccCCcceEEEEECCCCCcHHHHHHHHHHhC-CCceEEEecCccccc-------cccccc
Q 006117 41 DTLSFEKG-FFIVIRACQLLAQKNHGIILVGVAGPSGAGKTVFTEKVLNFM-PSIAVITMDNYNDSS-------RIIDGN 111 (660)
Q Consensus 41 ~~ls~~~g-~~~vL~~Isl~i~~ge~~~IIGI~GpSGSGKSTLak~L~~lL-p~~g~I~lDg~~~~~-------~~i~~v 111 (660)
+++++.++ ...+++++||.+++|+ ++||+|+||||||||+++|++++ |+.|.|.++|..... ..++++
T Consensus 8 ~~l~~~~~~~~~~l~~isl~i~~Ge---~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~i~~v 84 (274)
T PRK13647 8 EDLHFRYKDGTKALKGLSLSIPEGS---KTALLGPNGAGKSTLLLHLNGIYLPQRGRVKVMGREVNAENEKWVRSKVGLV 84 (274)
T ss_pred EEEEEEeCCCCeeeeeEEEEEcCCC---EEEEECCCCCcHHHHHHHHhcCCCCCceEEEECCEECCCCCHHHHHhhEEEE
Confidence 44555543 3569999999999999 99999999999999999999998 789999999975421 347899
Q ss_pred CCCCC-CCchhhHHHHHHhhhc--Cc-------c-------ccc-ccccccccccccceeeecCCccEEEEecceeeccc
Q 006117 112 FDDPR-LTDYDTLLENIRGLKE--GK-------A-------VQV-PIYDFKSSSRIGYRTLEVPSSRIVIIEGIYALSEK 173 (660)
Q Consensus 112 fq~p~-l~d~~tl~e~L~~L~~--Gk-------~-------I~~-PiyD~s~~~rs~~~~~~v~~a~VVIVEGilaL~de 173 (660)
||+|. .+...++.+++..... +. . +.. +..+...+..++++.+++..++.++.++.+++.||
T Consensus 85 ~q~~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~L~~~~~~~~~~LSgG~~qrv~laraL~~~p~llllDE 164 (274)
T PRK13647 85 FQDPDDQVFSSTVWDDVAFGPVNMGLDKDEVERRVEEALKAVRMWDFRDKPPYHLSYGQKKRVAIAGVLAMDPDVIVLDE 164 (274)
T ss_pred ecChhhhhccCcHHHHHHhhHHHcCCCHHHHHHHHHHHHHHCCCHHHhcCChhhCCHHHHHHHHHHHHHHcCCCEEEEEC
Confidence 99874 3444688888863211 10 0 011 22333445566777888888899999999999999
Q ss_pred ccCCCCEEEEEEcChhHHHHHHHHHHHHHhCCCH
Q 006117 174 LRPLIDLRVSVTGGVHFDLVKRVFRDIQRVGQEP 207 (660)
Q Consensus 174 Lr~llDlkIfVdad~dirLiRRI~RDv~eRGrs~ 207 (660)
+...+|. .....+..+.+.+.+.|.+.
T Consensus 165 Pt~~LD~-------~~~~~l~~~l~~~~~~g~ti 191 (274)
T PRK13647 165 PMAYLDP-------RGQETLMEILDRLHNQGKTV 191 (274)
T ss_pred CCcCCCH-------HHHHHHHHHHHHHHHCCCEE
Confidence 9999997 34445555555555446554
No 171
>PRK13641 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=99.35 E-value=1e-12 Score=137.80 Aligned_cols=157 Identities=16% Similarity=0.199 Sum_probs=112.5
Q ss_pred cceeeeecCc-----eEEEEecceeeccCCcceEEEEECCCCCcHHHHHHHHHHhC-CCceEEEecCcccc---------
Q 006117 40 EDTLSFEKGF-----FIVIRACQLLAQKNHGIILVGVAGPSGAGKTVFTEKVLNFM-PSIAVITMDNYNDS--------- 104 (660)
Q Consensus 40 ~~~ls~~~g~-----~~vL~~Isl~i~~ge~~~IIGI~GpSGSGKSTLak~L~~lL-p~~g~I~lDg~~~~--------- 104 (660)
.+++++.++. ..++++++|.+++|+ ++||+|+||||||||+++|++++ |+.|.|.+||....
T Consensus 5 ~~~l~~~~~~~~~~~~~~l~~vsl~i~~Ge---~~~iiG~NGaGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~ 81 (287)
T PRK13641 5 FENVDYIYSPGTPMEKKGLDNISFELEEGS---FVALVGHTGSGKSTLMQHFNALLKPSSGTITIAGYHITPETGNKNLK 81 (287)
T ss_pred EEEEEEEcCCCCCccccceeeeEEEEeCCC---EEEEECCCCCCHHHHHHHHhcCCCCCCcEEEECCEECccccccchHH
Confidence 3455555542 469999999999999 99999999999999999999998 79999999997532
Q ss_pred --cccccccCCCCC--CCchhhHHHHHHhhh--cC---c-----------cccc--ccccccccccccceeeecCCccEE
Q 006117 105 --SRIIDGNFDDPR--LTDYDTLLENIRGLK--EG---K-----------AVQV--PIYDFKSSSRIGYRTLEVPSSRIV 162 (660)
Q Consensus 105 --~~~i~~vfq~p~--l~d~~tl~e~L~~L~--~G---k-----------~I~~--PiyD~s~~~rs~~~~~~v~~a~VV 162 (660)
...++++||++. .+ ..++.+++.... .+ . .+.. ...+...+..++++.+++..++.+
T Consensus 82 ~~~~~ig~v~q~~~~~~~-~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~gL~~~~~~~~~~~LSgGq~qrl~laral 160 (287)
T PRK13641 82 KLRKKVSLVFQFPEAQLF-ENTVLKDVEFGPKNFGFSEDEAKEKALKWLKKVGLSEDLISKSPFELSGGQMRRVAIAGVM 160 (287)
T ss_pred HHHhceEEEEeChhhhhc-cchHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCChhHhhCCcccCCHHHHHHHHHHHHH
Confidence 134788999873 44 468888875311 11 0 0111 112333445666788888889999
Q ss_pred EEecceeecccccCCCCEEEEEEcChhHHHHHHHHHHHHHhCCCH
Q 006117 163 IIEGIYALSEKLRPLIDLRVSVTGGVHFDLVKRVFRDIQRVGQEP 207 (660)
Q Consensus 163 IVEGilaL~deLr~llDlkIfVdad~dirLiRRI~RDv~eRGrs~ 207 (660)
+.++.+++.||+...+|. ...+....+.+.+.+.|.+.
T Consensus 161 ~~~p~lLlLDEPt~gLD~-------~~~~~l~~~l~~l~~~g~tv 198 (287)
T PRK13641 161 AYEPEILCLDEPAAGLDP-------EGRKEMMQLFKDYQKAGHTV 198 (287)
T ss_pred HcCCCEEEEECCCCCCCH-------HHHHHHHHHHHHHHhCCCEE
Confidence 999999999999999997 34444555555554445543
No 172
>cd03228 ABCC_MRP_Like The MRP (Mutidrug Resistance Protein)-like transporters are involved in drug, peptide, and lipid export. They belong to the subfamily C of the ATP-binding cassette (ABC) superfamily of transport proteins. The ABCC subfamily contains transporters with a diverse functional spectrum that includes ion transport, cell surface receptor, and toxin secretion activities. The MRP-like family, simlar to all ABC proteins, have a common four-domain core structure constituted by two membrane-spanning domains, each composed of six transmembrane (TM) helices, and two nucleotide-binding domains (NBD). ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.35 E-value=9.1e-13 Score=127.69 Aligned_cols=115 Identities=23% Similarity=0.299 Sum_probs=92.7
Q ss_pred eeeeecCce--EEEEecceeeccCCcceEEEEECCCCCcHHHHHHHHHHhC-CCceEEEecCcccc-------ccccccc
Q 006117 42 TLSFEKGFF--IVIRACQLLAQKNHGIILVGVAGPSGAGKTVFTEKVLNFM-PSIAVITMDNYNDS-------SRIIDGN 111 (660)
Q Consensus 42 ~ls~~~g~~--~vL~~Isl~i~~ge~~~IIGI~GpSGSGKSTLak~L~~lL-p~~g~I~lDg~~~~-------~~~i~~v 111 (660)
++++.++.. .++++++|.+++|+ +++|+|+||||||||+++|++++ |..|.|.++|.... .+.++++
T Consensus 5 ~l~~~~~~~~~~~l~~i~~~i~~G~---~~~l~G~nGsGKstLl~~i~G~~~~~~G~i~~~g~~~~~~~~~~~~~~i~~~ 81 (171)
T cd03228 5 NVSFSYPGRPKPVLKDVSLTIKPGE---KVAIVGPSGSGKSTLLKLLLRLYDPTSGEILIDGVDLRDLDLESLRKNIAYV 81 (171)
T ss_pred EEEEEcCCCCcccccceEEEEcCCC---EEEEECCCCCCHHHHHHHHHcCCCCCCCEEEECCEEhhhcCHHHHHhhEEEE
Confidence 344444433 68999999999999 99999999999999999999998 78999999986432 1347789
Q ss_pred CCCCCCCchhhHHHHHHhhhcCcccccccccccccccccceeeecCCccEEEEecceeecccccCCCCE
Q 006117 112 FDDPRLTDYDTLLENIRGLKEGKAVQVPIYDFKSSSRIGYRTLEVPSSRIVIIEGIYALSEKLRPLIDL 180 (660)
Q Consensus 112 fq~p~l~d~~tl~e~L~~L~~Gk~I~~PiyD~s~~~rs~~~~~~v~~a~VVIVEGilaL~deLr~llDl 180 (660)
||++.+++ .++.+++ .++++..++..++.++.++.+++.||+...+|.
T Consensus 82 ~~~~~~~~-~t~~e~l--------------------LS~G~~~rl~la~al~~~p~llllDEP~~gLD~ 129 (171)
T cd03228 82 PQDPFLFS-GTIRENI--------------------LSGGQRQRIAIARALLRDPPILILDEATSALDP 129 (171)
T ss_pred cCCchhcc-chHHHHh--------------------hCHHHHHHHHHHHHHhcCCCEEEEECCCcCCCH
Confidence 99988776 5888776 334455667777788888989999999999997
No 173
>TIGR03415 ABC_choXWV_ATP choline ABC transporter, ATP-binding protein. Members of this protein family are the ATP-binding subunit of a three-protein transporter. This family belongs, more broadly, to the family of proline and glycine-betaine transporters, but members have been identified by direct characterization and by bioinformatic means as choline transporters. Many species have several closely-related members of this family, probably with variable abilities to act additionally on related quaternary amines.
Probab=99.35 E-value=7.2e-13 Score=144.74 Aligned_cols=133 Identities=19% Similarity=0.158 Sum_probs=105.4
Q ss_pred eecCceEEEEecceeeccCCcceEEEEECCCCCcHHHHHHHHHHhC-CCceEEEecCc----ccc-----------cccc
Q 006117 45 FEKGFFIVIRACQLLAQKNHGIILVGVAGPSGAGKTVFTEKVLNFM-PSIAVITMDNY----NDS-----------SRII 108 (660)
Q Consensus 45 ~~~g~~~vL~~Isl~i~~ge~~~IIGI~GpSGSGKSTLak~L~~lL-p~~g~I~lDg~----~~~-----------~~~i 108 (660)
..+|...+++++||.+++|+ +++|+|+||||||||+++|++++ |..|.|.+||. ... .+.+
T Consensus 32 ~~~g~~~~l~~vsf~i~~Ge---i~~I~G~nGsGKSTLlr~L~Gl~~p~~G~I~idG~~~~~~i~~~~~~~l~~~r~~~i 108 (382)
T TIGR03415 32 DETGLVVGVANASLDIEEGE---ICVLMGLSGSGKSSLLRAVNGLNPVSRGSVLVKDGDGSIDVANCDAATLRRLRTHRV 108 (382)
T ss_pred HhhCCEEEEEeeEEEEcCCC---EEEEECCCCCcHHHHHHHHhCCCCCCCcEEEECCEecccccccCCHHHHHHHhcCCE
Confidence 45578889999999999999 99999999999999999999998 88999999984 111 1358
Q ss_pred cccCCCCCCCchhhHHHHHHhhhc--Cc--------------cccc-ccccccccccccceeeecCCccEEEEecceeec
Q 006117 109 DGNFDDPRLTDYDTLLENIRGLKE--GK--------------AVQV-PIYDFKSSSRIGYRTLEVPSSRIVIIEGIYALS 171 (660)
Q Consensus 109 ~~vfq~p~l~d~~tl~e~L~~L~~--Gk--------------~I~~-PiyD~s~~~rs~~~~~~v~~a~VVIVEGilaL~ 171 (660)
+++||++.++++.++.+|+..... +. .+.. +..+...+..++++.+++..++.++.++.+++.
T Consensus 109 ~~vfQ~~~l~p~~Tv~eNi~~~~~~~g~~~~~~~~~a~e~le~vgL~~~~~~~~~~LSgGq~QRV~LARALa~~P~ILLl 188 (382)
T TIGR03415 109 SMVFQKFALMPWLTVEENVAFGLEMQGMPEAERRKRVDEQLELVGLAQWADKKPGELSGGMQQRVGLARAFAMDADILLM 188 (382)
T ss_pred EEEECCCcCCCCCcHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCchhhcCChhhCCHHHHHHHHHHHHHhcCCCEEEE
Confidence 899999999999999999864221 10 0111 122334445667788888888999999999999
Q ss_pred ccccCCCCE
Q 006117 172 EKLRPLIDL 180 (660)
Q Consensus 172 deLr~llDl 180 (660)
||+...+|.
T Consensus 189 DEPts~LD~ 197 (382)
T TIGR03415 189 DEPFSALDP 197 (382)
T ss_pred ECCCccCCH
Confidence 999999997
No 174
>PRK14274 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.34 E-value=1.4e-12 Score=134.35 Aligned_cols=138 Identities=15% Similarity=0.170 Sum_probs=103.1
Q ss_pred ccceeeeecCceEEEEecceeeccCCcceEEEEECCCCCcHHHHHHHHHHhCC------CceEEEecCcccc--------
Q 006117 39 IEDTLSFEKGFFIVIRACQLLAQKNHGIILVGVAGPSGAGKTVFTEKVLNFMP------SIAVITMDNYNDS-------- 104 (660)
Q Consensus 39 ~~~~ls~~~g~~~vL~~Isl~i~~ge~~~IIGI~GpSGSGKSTLak~L~~lLp------~~g~I~lDg~~~~-------- 104 (660)
..+++++.++...++++++|.+++|+ ++||+|+||||||||+++|++.++ ..|.|.++|....
T Consensus 14 ~i~~l~~~~~~~~~l~~vs~~i~~Ge---~~~l~G~nGsGKSTLl~~l~G~~~~~p~~~~~G~i~~~g~~~~~~~~~~~~ 90 (259)
T PRK14274 14 QINGMNLWYGQHHALKNINLSIPENE---VTAIIGPSGCGKSTFIKTLNLMIQMVPNVKLTGEMNYNGSNILKGKVDLVE 90 (259)
T ss_pred EEeeEEEEECCeeeEEeeEEEEcCCC---EEEEECCCCCCHHHHHHHHHhhccCCCCCCCceEEEECCEEccccccCHHH
Confidence 34555666666789999999999999 999999999999999999999872 4899999987532
Q ss_pred -cccccccCCCCCCCchhhHHHHHHhhhc--Cc----c----c-------cc-----ccccccccccccceeeecCCccE
Q 006117 105 -SRIIDGNFDDPRLTDYDTLLENIRGLKE--GK----A----V-------QV-----PIYDFKSSSRIGYRTLEVPSSRI 161 (660)
Q Consensus 105 -~~~i~~vfq~p~l~d~~tl~e~L~~L~~--Gk----~----I-------~~-----PiyD~s~~~rs~~~~~~v~~a~V 161 (660)
...++++||++.+++. ++.+++..... +. . + .. ...+......++++.+++..++.
T Consensus 91 ~~~~i~~v~q~~~~~~~-tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~l~~~~~~LS~Gq~qrv~lara 169 (259)
T PRK14274 91 LRKNIGMVFQKGNPFPQ-SIFDNVAYGPRIHGTKNKKKLQEIVEKSLKDVALWDEVKDRLHTQALSLSGGQQQRLCIARA 169 (259)
T ss_pred HhhceEEEecCCccccc-CHHHHHHhHHHhcCCCCHHHHHHHHHHHHHHcCCchhhhhhhhCCcccCCHHHHHHHHHHHH
Confidence 1347899999988874 88888753211 10 0 0 00 01222333455667777888888
Q ss_pred EEEecceeecccccCCCCE
Q 006117 162 VIIEGIYALSEKLRPLIDL 180 (660)
Q Consensus 162 VIVEGilaL~deLr~llDl 180 (660)
++.++.+++.||+...+|.
T Consensus 170 l~~~p~llllDEPt~~LD~ 188 (259)
T PRK14274 170 LATNPDVLLMDEPTSALDP 188 (259)
T ss_pred HhcCCCEEEEcCCcccCCH
Confidence 9999999999999999997
No 175
>PRK13643 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=99.34 E-value=1e-12 Score=138.03 Aligned_cols=146 Identities=17% Similarity=0.241 Sum_probs=107.2
Q ss_pred EEEEecceeeccCCcceEEEEECCCCCcHHHHHHHHHHhC-CCceEEEecCcccc-----------cccccccCCCC--C
Q 006117 51 IVIRACQLLAQKNHGIILVGVAGPSGAGKTVFTEKVLNFM-PSIAVITMDNYNDS-----------SRIIDGNFDDP--R 116 (660)
Q Consensus 51 ~vL~~Isl~i~~ge~~~IIGI~GpSGSGKSTLak~L~~lL-p~~g~I~lDg~~~~-----------~~~i~~vfq~p--~ 116 (660)
.++++++|.+++|+ +++|+|+||||||||+++|++++ |+.|.|.+||.... .+.++++||+| .
T Consensus 20 ~~l~~vsl~i~~Ge---~v~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~i~~~~~~~~~~~~~~~ig~v~q~~~~~ 96 (288)
T PRK13643 20 RALFDIDLEVKKGS---YTALIGHTGSGKSTLLQHLNGLLQPTEGKVTVGDIVVSSTSKQKEIKPVRKKVGVVFQFPESQ 96 (288)
T ss_pred cceeeeEEEEcCCC---EEEEECCCCChHHHHHHHHhcCCCCCCcEEEECCEECccccccccHHHHHhhEEEEecCcchh
Confidence 58999999999999 99999999999999999999998 89999999997532 13478999987 4
Q ss_pred CCchhhHHHHHHhhhc--C---c-----------ccccc--cccccccccccceeeecCCccEEEEecceeecccccCCC
Q 006117 117 LTDYDTLLENIRGLKE--G---K-----------AVQVP--IYDFKSSSRIGYRTLEVPSSRIVIIEGIYALSEKLRPLI 178 (660)
Q Consensus 117 l~d~~tl~e~L~~L~~--G---k-----------~I~~P--iyD~s~~~rs~~~~~~v~~a~VVIVEGilaL~deLr~ll 178 (660)
+++ .++.+++..... + . .+... ..+...+..++++.+++..+.+++.++.+++.||+...+
T Consensus 97 l~~-~tv~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~L~~~~~~~~~~~LSgGqkqrvaiA~aL~~~p~illLDEPt~gL 175 (288)
T PRK13643 97 LFE-ETVLKDVAFGPQNFGIPKEKAEKIAAEKLEMVGLADEFWEKSPFELSGGQMRRVAIAGILAMEPEVLVLDEPTAGL 175 (288)
T ss_pred ccc-chHHHHHHhHHHHcCCCHHHHHHHHHHHHHHcCCChhhccCCcccCCHHHHHHHHHHHHHHhCCCEEEEECCccCC
Confidence 555 588888754221 1 0 01121 223444556677888888999999999999999999999
Q ss_pred CEEEEEEcChhHHHHHHHHHHHHHhCCCH
Q 006117 179 DLRVSVTGGVHFDLVKRVFRDIQRVGQEP 207 (660)
Q Consensus 179 DlkIfVdad~dirLiRRI~RDv~eRGrs~ 207 (660)
|. ...+.+..+.+.+...|.+.
T Consensus 176 D~-------~~~~~l~~~l~~l~~~g~ti 197 (288)
T PRK13643 176 DP-------KARIEMMQLFESIHQSGQTV 197 (288)
T ss_pred CH-------HHHHHHHHHHHHHHHCCCEE
Confidence 97 23333444444444445544
No 176
>PRK14240 phosphate transporter ATP-binding protein; Provisional
Probab=99.34 E-value=1.5e-12 Score=133.20 Aligned_cols=136 Identities=17% Similarity=0.228 Sum_probs=102.8
Q ss_pred ceeeeecCceEEEEecceeeccCCcceEEEEECCCCCcHHHHHHHHHHhC---C---CceEEEecCcccc---------c
Q 006117 41 DTLSFEKGFFIVIRACQLLAQKNHGIILVGVAGPSGAGKTVFTEKVLNFM---P---SIAVITMDNYNDS---------S 105 (660)
Q Consensus 41 ~~ls~~~g~~~vL~~Isl~i~~ge~~~IIGI~GpSGSGKSTLak~L~~lL---p---~~g~I~lDg~~~~---------~ 105 (660)
+++++.++...++++++|.+++|+ ++||+|+||||||||+++|++.+ | ..|.|.++|.... .
T Consensus 7 ~~l~~~~~~~~~l~~vs~~i~~Ge---~~~i~G~nGsGKSTLl~~i~G~~~~~~~~~~~G~i~~~g~~~~~~~~~~~~~~ 83 (250)
T PRK14240 7 KDLDLFYGDFQALKKINLDIEENQ---VTALIGPSGCGKSTFLRTLNRMNDLIPSVKIEGEVLLDGQDIYKSDIDVNQLR 83 (250)
T ss_pred EEEEEEECCceeeecceEEEcCCC---EEEEECCCCCCHHHHHHHHhccccccCCCCCceEEEECCEEccccccchHHHh
Confidence 455555555679999999999999 99999999999999999999985 2 5899999986532 1
Q ss_pred ccccccCCCCCCCchhhHHHHHHhhhc--Cc----ccc-----------c-----ccccccccccccceeeecCCccEEE
Q 006117 106 RIIDGNFDDPRLTDYDTLLENIRGLKE--GK----AVQ-----------V-----PIYDFKSSSRIGYRTLEVPSSRIVI 163 (660)
Q Consensus 106 ~~i~~vfq~p~l~d~~tl~e~L~~L~~--Gk----~I~-----------~-----PiyD~s~~~rs~~~~~~v~~a~VVI 163 (660)
..+++++|++.+++ .++.+++..... +. ... . ...+......++++.+++..++.++
T Consensus 84 ~~i~~~~q~~~~~~-~t~~~ni~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~l~~~~~~~~~~LS~G~~qrv~laral~ 162 (250)
T PRK14240 84 KRVGMVFQQPNPFP-MSIYDNVAYGPRTHGIKDKKKLDEIVEKSLKGAALWDEVKDRLKKSALGLSGGQQQRLCIARALA 162 (250)
T ss_pred ccEEEEecCCccCc-ccHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHcCCchhhHHHHhcCCCCCCHHHHHHHHHHHHHh
Confidence 34789999998887 788888864211 10 000 0 0112233445667778888889999
Q ss_pred EecceeecccccCCCCE
Q 006117 164 IEGIYALSEKLRPLIDL 180 (660)
Q Consensus 164 VEGilaL~deLr~llDl 180 (660)
.++.+++.||+...+|.
T Consensus 163 ~~p~llllDEP~~~LD~ 179 (250)
T PRK14240 163 VEPEVLLMDEPTSALDP 179 (250)
T ss_pred cCCCEEEEeCCCccCCH
Confidence 99999999999999997
No 177
>COG4181 Predicted ABC-type transport system involved in lysophospholipase L1 biosynthesis, ATPase component [Secondary metabolites biosynthesis, transport, and catabolism]
Probab=99.34 E-value=6.8e-13 Score=129.23 Aligned_cols=145 Identities=17% Similarity=0.181 Sum_probs=119.0
Q ss_pred ceeeeeccceeeeecCceEEEEecceeeccCCcceEEEEECCCCCcHHHHHHHHHHhC-CCceEEEecCcccc-------
Q 006117 33 RYEIVPIEDTLSFEKGFFIVIRACQLLAQKNHGIILVGVAGPSGAGKTVFTEKVLNFM-PSIAVITMDNYNDS------- 104 (660)
Q Consensus 33 ~~ei~~~~~~ls~~~g~~~vL~~Isl~i~~ge~~~IIGI~GpSGSGKSTLak~L~~lL-p~~g~I~lDg~~~~------- 104 (660)
++++..+.+.+.-..+...+|++|++.+++|+ .|+|+||||||||||+-.++++- |++|.|.+.|....
T Consensus 6 ii~~~~l~ktvg~~~~~l~IL~~V~L~v~~Ge---~vaiVG~SGSGKSTLl~vlAGLd~~ssGeV~l~G~~L~~ldEd~r 82 (228)
T COG4181 6 IIEVHHLSKTVGQGEGELSILKGVELVVKRGE---TVAIVGPSGSGKSTLLAVLAGLDDPSSGEVRLLGQPLHKLDEDAR 82 (228)
T ss_pred eeehhhhhhhhcCCCcceeEeecceEEecCCc---eEEEEcCCCCcHHhHHHHHhcCCCCCCceEEEcCcchhhcCHHHH
Confidence 44555666777677788899999999999999 99999999999999999999997 89999999997432
Q ss_pred ----cccccccCCCCCCCchhhHHHHHHh--hhcCccc---------------ccccccccccccccceeeecCCccEEE
Q 006117 105 ----SRIIDGNFDDPRLTDYDTLLENIRG--LKEGKAV---------------QVPIYDFKSSSRIGYRTLEVPSSRIVI 163 (660)
Q Consensus 105 ----~~~i~~vfq~p~l~d~~tl~e~L~~--L~~Gk~I---------------~~PiyD~s~~~rs~~~~~~v~~a~VVI 163 (660)
.+.++++||.+.+.+.++..||+.- ...|+.. .-....+..++.++++++++..++.+.
T Consensus 83 A~~R~~~vGfVFQSF~Lip~ltAlENV~lPleL~ge~~~~~~~~A~~lL~~vGLg~Rl~HyP~qLSGGEQQRVAiARAfa 162 (228)
T COG4181 83 AALRARHVGFVFQSFHLIPNLTALENVALPLELRGESSADSRAGAKALLEAVGLGKRLTHYPAQLSGGEQQRVALARAFA 162 (228)
T ss_pred HHhhccceeEEEEeeeccccchhhhhccchhhhcCCccccHHHHHHHHHHHhCcccccccCccccCchHHHHHHHHHHhc
Confidence 2568999999999999999999853 2223110 012356667788888999999999999
Q ss_pred EecceeecccccCCCCE
Q 006117 164 IEGIYALSEKLRPLIDL 180 (660)
Q Consensus 164 VEGilaL~deLr~llDl 180 (660)
.++.++|-||+...+|-
T Consensus 163 ~~P~vLfADEPTGNLD~ 179 (228)
T COG4181 163 GRPDVLFADEPTGNLDR 179 (228)
T ss_pred CCCCEEeccCCCCCcch
Confidence 99999999999999985
No 178
>PRK11231 fecE iron-dicitrate transporter ATP-binding subunit; Provisional
Probab=99.34 E-value=1.2e-12 Score=134.38 Aligned_cols=138 Identities=13% Similarity=0.160 Sum_probs=105.1
Q ss_pred cceeeeecCceEEEEecceeeccCCcceEEEEECCCCCcHHHHHHHHHHhC-CCceEEEecCcccc-------ccccccc
Q 006117 40 EDTLSFEKGFFIVIRACQLLAQKNHGIILVGVAGPSGAGKTVFTEKVLNFM-PSIAVITMDNYNDS-------SRIIDGN 111 (660)
Q Consensus 40 ~~~ls~~~g~~~vL~~Isl~i~~ge~~~IIGI~GpSGSGKSTLak~L~~lL-p~~g~I~lDg~~~~-------~~~i~~v 111 (660)
.+++++.++...+++++||.+++|+ +++|+|+||||||||+++|++++ |..|.|.++|.... .+.++++
T Consensus 5 ~~~l~~~~~~~~il~~is~~i~~Ge---~~~l~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~~~i~~~ 81 (255)
T PRK11231 5 TENLTVGYGTKRILNDLSLSLPTGK---ITALIGPNGCGKSTLLKCFARLLTPQSGTVFLGDKPISMLSSRQLARRLALL 81 (255)
T ss_pred EEeEEEEECCEEEEeeeeeEEcCCc---EEEEECCCCCCHHHHHHHHhCCcCCCCcEEEECCEEhHHCCHHHHhhheEEe
Confidence 4556666666789999999999999 99999999999999999999998 78999999986432 1347889
Q ss_pred CCCCCCCchhhHHHHHHhhhc------C---c----c-------ccc-ccccccccccccceeeecCCccEEEEecceee
Q 006117 112 FDDPRLTDYDTLLENIRGLKE------G---K----A-------VQV-PIYDFKSSSRIGYRTLEVPSSRIVIIEGIYAL 170 (660)
Q Consensus 112 fq~p~l~d~~tl~e~L~~L~~------G---k----~-------I~~-PiyD~s~~~rs~~~~~~v~~a~VVIVEGilaL 170 (660)
||++.+++..++.+++..... + . . +.. ...+...+..++++.+++..+..++.++.+++
T Consensus 82 ~q~~~~~~~~tv~~~i~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~laral~~~p~lll 161 (255)
T PRK11231 82 PQHHLTPEGITVRELVAYGRSPWLSLWGRLSAEDNARVNQAMEQTRINHLADRRLTDLSGGQRQRAFLAMVLAQDTPVVL 161 (255)
T ss_pred cccCCCCCCccHHHHHHhccchhhhhccCCCHHHHHHHHHHHHHcCCHHHHcCCcccCCHHHHHHHHHHHHHhcCCCEEE
Confidence 999888877788888753110 0 0 0 001 11233344556677778888889999999999
Q ss_pred cccccCCCCE
Q 006117 171 SEKLRPLIDL 180 (660)
Q Consensus 171 ~deLr~llDl 180 (660)
.||+...+|.
T Consensus 162 lDEP~~~LD~ 171 (255)
T PRK11231 162 LDEPTTYLDI 171 (255)
T ss_pred EcCCcccCCH
Confidence 9999999997
No 179
>PRK14244 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.34 E-value=1.4e-12 Score=133.51 Aligned_cols=142 Identities=16% Similarity=0.138 Sum_probs=104.2
Q ss_pred eeeeccceeeeecCceEEEEecceeeccCCcceEEEEECCCCCcHHHHHHHHHHhCC------CceEEEecCcccc----
Q 006117 35 EIVPIEDTLSFEKGFFIVIRACQLLAQKNHGIILVGVAGPSGAGKTVFTEKVLNFMP------SIAVITMDNYNDS---- 104 (660)
Q Consensus 35 ei~~~~~~ls~~~g~~~vL~~Isl~i~~ge~~~IIGI~GpSGSGKSTLak~L~~lLp------~~g~I~lDg~~~~---- 104 (660)
++....+++++.++...++++++|.+.+|+ +++|+|+||||||||+++|+++.+ ..|.|.++|....
T Consensus 3 ~~~~~~~~l~~~~~~~~~l~~is~~i~~Ge---~~~I~G~nGsGKSTLl~~i~G~~~~~~~~~~~G~i~~~g~~i~~~~~ 79 (251)
T PRK14244 3 EIHASVKNLNLWYGSKQILFDINLDIYKRE---VTAFIGPSGCGKSTFLRCFNRMNDFVPNCKVKGELDIDGIDVYSVDT 79 (251)
T ss_pred ceEEEeeeEEEEECCeeeeeeeEEEEcCCC---EEEEECCCCCCHHHHHHHHHhhcccCCCCCcceEEEECCEehHhccc
Confidence 444455666777777789999999999999 999999999999999999999962 5899999986431
Q ss_pred -----cccccccCCCCCCCchhhHHHHHHhhh--cCc-----c-----------cccc-----cccccccccccceeeec
Q 006117 105 -----SRIIDGNFDDPRLTDYDTLLENIRGLK--EGK-----A-----------VQVP-----IYDFKSSSRIGYRTLEV 156 (660)
Q Consensus 105 -----~~~i~~vfq~p~l~d~~tl~e~L~~L~--~Gk-----~-----------I~~P-----iyD~s~~~rs~~~~~~v 156 (660)
.+.++++||++.+++. ++.+++.... .+. . +... ..+......++++.+++
T Consensus 80 ~~~~~~~~i~~v~q~~~~~~~-tv~~ni~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~LS~Gq~qrv 158 (251)
T PRK14244 80 NVVLLRAKVGMVFQKPNPFPK-SIYDNVAYGPKLHGLAKNKKKLDEIVEKSLTSVGLWEELGDRLKDSAFELSGGQQQRL 158 (251)
T ss_pred chHHHhhhEEEEecCcccccC-CHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHcCCCchhhhHhhcChhhCCHHHHHHH
Confidence 2347899999988875 7888875321 110 0 0000 11222334455677777
Q ss_pred CCccEEEEecceeecccccCCCCE
Q 006117 157 PSSRIVIIEGIYALSEKLRPLIDL 180 (660)
Q Consensus 157 ~~a~VVIVEGilaL~deLr~llDl 180 (660)
..++.++.++.+++.||+...+|.
T Consensus 159 ~laral~~~p~llllDEPt~~LD~ 182 (251)
T PRK14244 159 CIARAIAVKPTMLLMDEPCSALDP 182 (251)
T ss_pred HHHHHHhcCCCEEEEeCCCccCCH
Confidence 888888889999999999999997
No 180
>cd03264 ABC_drug_resistance_like ABC-type multidrug transport system, ATPase component. The biological function of this family is not well characterized, but display ABC domains similar to members of ABCA subfamily. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.34 E-value=1.4e-12 Score=129.99 Aligned_cols=136 Identities=20% Similarity=0.172 Sum_probs=104.1
Q ss_pred ceeeeecCceEEEEecceeeccCCcceEEEEECCCCCcHHHHHHHHHHhC-CCceEEEecCcccc------cccccccCC
Q 006117 41 DTLSFEKGFFIVIRACQLLAQKNHGIILVGVAGPSGAGKTVFTEKVLNFM-PSIAVITMDNYNDS------SRIIDGNFD 113 (660)
Q Consensus 41 ~~ls~~~g~~~vL~~Isl~i~~ge~~~IIGI~GpSGSGKSTLak~L~~lL-p~~g~I~lDg~~~~------~~~i~~vfq 113 (660)
+++++.++...++++++|.+++| +++|+|+||||||||+++|++++ |..|.|.++|.... .+.+++++|
T Consensus 4 ~~~~~~~~~~~~l~~vs~~i~~g----~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~~i~~~~q 79 (211)
T cd03264 4 ENLTKRYGKKRALDGVSLTLGPG----MYGLLGPNGAGKTTLMRILATLTPPSSGTIRIDGQDVLKQPQKLRRRIGYLPQ 79 (211)
T ss_pred EEEEEEECCEEEEcceeEEEcCC----cEEEECCCCCCHHHHHHHHhCCCCCCccEEEECCCccccchHHHHhheEEecC
Confidence 44556666668999999999873 79999999999999999999998 78999999996432 235788999
Q ss_pred CCCCCchhhHHHHHHhhh--cC---c-----------cccc-ccccccccccccceeeecCCccEEEEecceeecccccC
Q 006117 114 DPRLTDYDTLLENIRGLK--EG---K-----------AVQV-PIYDFKSSSRIGYRTLEVPSSRIVIIEGIYALSEKLRP 176 (660)
Q Consensus 114 ~p~l~d~~tl~e~L~~L~--~G---k-----------~I~~-PiyD~s~~~rs~~~~~~v~~a~VVIVEGilaL~deLr~ 176 (660)
++.+++..++.+++.... .+ . .... +.++......++++.+++..++.++-++.+++.||+..
T Consensus 80 ~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~la~al~~~p~llllDEPt~ 159 (211)
T cd03264 80 EFGVYPNFTVREFLDYIAWLKGIPSKEVKARVDEVLELVNLGDRAKKKIGSLSGGMRRRVGIAQALVGDPSILIVDEPTA 159 (211)
T ss_pred CCcccccCCHHHHHHHHHHHhCCCHHHHHHHHHHHHHHCCCHHHHhCchhhCCHHHHHHHHHHHHHhcCCCEEEEcCCcc
Confidence 999888888888875321 01 0 0111 11233344566677888888899999999999999999
Q ss_pred CCCE
Q 006117 177 LIDL 180 (660)
Q Consensus 177 llDl 180 (660)
.+|.
T Consensus 160 ~LD~ 163 (211)
T cd03264 160 GLDP 163 (211)
T ss_pred cCCH
Confidence 9997
No 181
>TIGR01166 cbiO cobalt transport protein ATP-binding subunit. This model describes the ATP binding subunit of the multisubunit cobalt transporter in bacteria and its equivalents in archaea. The model is restricted to ATP subunit that is a part of the cobalt transporter, which belongs to the ABC transporter superfamily (ATP Binding Cassette). The model excludes ATP binding subunit that are associated with other transporters belonging to ABC transporter superfamily. This superfamily includes two groups, one which catalyze the uptake of small molecules, including ions from the external milieu and the other group which is engaged in the efflux of small molecular weight compounds and ions from within the cell. Energy derived from the hydrolysis of ATP drive the both the process of uptake and efflux.
Probab=99.34 E-value=9.7e-13 Score=129.16 Aligned_cols=128 Identities=16% Similarity=0.176 Sum_probs=96.2
Q ss_pred ceEEEEecceeeccCCcceEEEEECCCCCcHHHHHHHHHHhC-CCceEEEecCcccc---------cccccccCCCCC--
Q 006117 49 FFIVIRACQLLAQKNHGIILVGVAGPSGAGKTVFTEKVLNFM-PSIAVITMDNYNDS---------SRIIDGNFDDPR-- 116 (660)
Q Consensus 49 ~~~vL~~Isl~i~~ge~~~IIGI~GpSGSGKSTLak~L~~lL-p~~g~I~lDg~~~~---------~~~i~~vfq~p~-- 116 (660)
...++++++|.+++|+ ++||+|+||||||||+++|++.+ |+.|.|.++|.... .+.+++++|++.
T Consensus 4 ~~~il~~vsl~i~~Ge---~~~i~G~nGsGKSTLl~~i~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~~i~~~~q~~~~~ 80 (190)
T TIGR01166 4 GPEVLKGLNFAAERGE---VLALLGANGAGKSTLLLHLNGLLRPQSGAVLIDGEPLDYSRKGLLERRQRVGLVFQDPDDQ 80 (190)
T ss_pred ccceecceeEEEcCCC---EEEEECCCCCCHHHHHHHHhCCCCCCceeEEECCEEccccccchHHHHhhEEEEecChhhc
Confidence 3468999999999999 99999999999999999999998 78999999986431 134688999873
Q ss_pred CCchhhHHHHHHhhh--cC---c-----------cccc-ccccccccccccceeeecCCccEEEEecceeecccccCCCC
Q 006117 117 LTDYDTLLENIRGLK--EG---K-----------AVQV-PIYDFKSSSRIGYRTLEVPSSRIVIIEGIYALSEKLRPLID 179 (660)
Q Consensus 117 l~d~~tl~e~L~~L~--~G---k-----------~I~~-PiyD~s~~~rs~~~~~~v~~a~VVIVEGilaL~deLr~llD 179 (660)
.+ ..++.+++.... .+ . .+.. +..+...+..++++.+++..++.++.++.+++.||+...+|
T Consensus 81 ~~-~~tv~~nl~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~laral~~~p~llllDEPt~~LD 159 (190)
T TIGR01166 81 LF-AADVDQDVAFGPLNLGLSEAEVERRVREALTAVGASGLRERPTHCLSGGEKKRVAIAGAVAMRPDVLLLDEPTAGLD 159 (190)
T ss_pred cc-cccHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCchhhhhCChhhCCHHHHHHHHHHHHHhcCCCEEEEcCCcccCC
Confidence 44 357888775311 01 0 0111 11233344556677778888888999999999999999999
Q ss_pred E
Q 006117 180 L 180 (660)
Q Consensus 180 l 180 (660)
.
T Consensus 160 ~ 160 (190)
T TIGR01166 160 P 160 (190)
T ss_pred H
Confidence 7
No 182
>PRK13636 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=99.33 E-value=1.4e-12 Score=136.50 Aligned_cols=158 Identities=13% Similarity=0.159 Sum_probs=110.9
Q ss_pred cceeeeecC-ceEEEEecceeeccCCcceEEEEECCCCCcHHHHHHHHHHhC-CCceEEEecCcccc---------cccc
Q 006117 40 EDTLSFEKG-FFIVIRACQLLAQKNHGIILVGVAGPSGAGKTVFTEKVLNFM-PSIAVITMDNYNDS---------SRII 108 (660)
Q Consensus 40 ~~~ls~~~g-~~~vL~~Isl~i~~ge~~~IIGI~GpSGSGKSTLak~L~~lL-p~~g~I~lDg~~~~---------~~~i 108 (660)
.+++++.++ ...++++++|.+++|+ ++||+|+||||||||+++|++++ |..|.|.++|.... ...+
T Consensus 8 ~~~l~~~~~~~~~~l~~vs~~i~~Ge---~~~i~G~nGaGKSTLl~~i~Gl~~p~~G~i~i~g~~~~~~~~~~~~~~~~i 84 (283)
T PRK13636 8 VEELNYNYSDGTHALKGININIKKGE---VTAILGGNGAGKSTLFQNLNGILKPSSGRILFDGKPIDYSRKGLMKLRESV 84 (283)
T ss_pred EEeEEEEeCCCCeeeeeeEEEEcCCC---EEEEECCCCCCHHHHHHHHhcCCCCCccEEEECCEECCCCcchHHHHHhhE
Confidence 345555553 4679999999999999 99999999999999999999998 78999999997542 1347
Q ss_pred cccCCCCC-CCchhhHHHHHHhhhc--Cc--------------cccc-ccccccccccccceeeecCCccEEEEecceee
Q 006117 109 DGNFDDPR-LTDYDTLLENIRGLKE--GK--------------AVQV-PIYDFKSSSRIGYRTLEVPSSRIVIIEGIYAL 170 (660)
Q Consensus 109 ~~vfq~p~-l~d~~tl~e~L~~L~~--Gk--------------~I~~-PiyD~s~~~rs~~~~~~v~~a~VVIVEGilaL 170 (660)
+++||++. .+...++.+++..... +. .+.. ...+......++++.+++..++.++.++.+++
T Consensus 85 g~v~q~~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~gL~~~~~~~~~~LS~G~~qrl~laraL~~~p~lLi 164 (283)
T PRK13636 85 GMVFQDPDNQLFSASVYQDVSFGAVNLKLPEDEVRKRVDNALKRTGIEHLKDKPTHCLSFGQKKRVAIAGVLVMEPKVLV 164 (283)
T ss_pred EEEecCcchhhccccHHHHHHhHHHHcCCCHHHHHHHHHHHHHHCCChhhhhCCcccCCHHHHHHHHHHHHHHcCCCEEE
Confidence 89999874 2334688888754211 10 0001 11223334455667778888889999999999
Q ss_pred cccccCCCCEEEEEEcChhHHHHHHHHHHHHHh-CCCH
Q 006117 171 SEKLRPLIDLRVSVTGGVHFDLVKRVFRDIQRV-GQEP 207 (660)
Q Consensus 171 ~deLr~llDlkIfVdad~dirLiRRI~RDv~eR-Grs~ 207 (660)
.||+...+|. ........+.+.+.+. |.+.
T Consensus 165 lDEPt~gLD~-------~~~~~l~~~l~~l~~~~g~ti 195 (283)
T PRK13636 165 LDEPTAGLDP-------MGVSEIMKLLVEMQKELGLTI 195 (283)
T ss_pred EeCCccCCCH-------HHHHHHHHHHHHHHHhCCCEE
Confidence 9999999997 3333444445544432 5554
No 183
>PRK10744 pstB phosphate transporter ATP-binding protein; Provisional
Probab=99.33 E-value=1.3e-12 Score=134.87 Aligned_cols=136 Identities=19% Similarity=0.176 Sum_probs=103.2
Q ss_pred ceeeeecCceEEEEecceeeccCCcceEEEEECCCCCcHHHHHHHHHHhC------CCceEEEecCcccc---------c
Q 006117 41 DTLSFEKGFFIVIRACQLLAQKNHGIILVGVAGPSGAGKTVFTEKVLNFM------PSIAVITMDNYNDS---------S 105 (660)
Q Consensus 41 ~~ls~~~g~~~vL~~Isl~i~~ge~~~IIGI~GpSGSGKSTLak~L~~lL------p~~g~I~lDg~~~~---------~ 105 (660)
+++++.++...++++++|.+++|+ ++||+|+||||||||+++|++++ |..|.|.++|.... .
T Consensus 17 ~~l~~~~~~~~il~~isl~i~~Ge---~~~i~G~nGsGKSTLl~~l~Gl~~~~p~~p~~G~i~~~g~~~~~~~~~~~~~~ 93 (260)
T PRK10744 17 RNLNFYYGKFHALKNINLDIAKNQ---VTAFIGPSGCGKSTLLRTFNRMYELYPEQRAEGEILLDGENILTPKQDIALLR 93 (260)
T ss_pred EEEEEEeCCeEEeeceeEEEcCCC---EEEEECCCCCCHHHHHHHHhcccccCCCCCcceEEEECCEEccccccchHHHh
Confidence 455555566679999999999999 99999999999999999999997 26899999986532 1
Q ss_pred ccccccCCCCCCCchhhHHHHHHhhhc---C-------cc-------ccc-----ccccccccccccceeeecCCccEEE
Q 006117 106 RIIDGNFDDPRLTDYDTLLENIRGLKE---G-------KA-------VQV-----PIYDFKSSSRIGYRTLEVPSSRIVI 163 (660)
Q Consensus 106 ~~i~~vfq~p~l~d~~tl~e~L~~L~~---G-------k~-------I~~-----PiyD~s~~~rs~~~~~~v~~a~VVI 163 (660)
+.++++||++.+++ .++.+++..... + .. ... ...+......++++.+++..++.++
T Consensus 94 ~~i~~~~q~~~~~~-~tv~~nl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~LS~Gq~qrv~laral~ 172 (260)
T PRK10744 94 AKVGMVFQKPTPFP-MSIYDNIAFGVRLFEKLSRAEMDERVEWALTKAALWNEVKDKLHQSGYSLSGGQQQRLCIARGIA 172 (260)
T ss_pred cceEEEecCCccCc-CcHHHHHhhhHhhcCCCCHHHHHHHHHHHHHHcCCChhhHHHHhcCCCCCCHHHHHHHHHHHHHH
Confidence 34789999998887 788888763211 1 00 000 0112233445667778888889999
Q ss_pred EecceeecccccCCCCE
Q 006117 164 IEGIYALSEKLRPLIDL 180 (660)
Q Consensus 164 VEGilaL~deLr~llDl 180 (660)
.++.+++.||+...+|.
T Consensus 173 ~~p~lllLDEPt~~LD~ 189 (260)
T PRK10744 173 IRPEVLLLDEPCSALDP 189 (260)
T ss_pred CCCCEEEEcCCCccCCH
Confidence 99999999999999997
No 184
>PRK10261 glutathione transporter ATP-binding protein; Provisional
Probab=99.33 E-value=1.6e-12 Score=150.09 Aligned_cols=149 Identities=15% Similarity=0.198 Sum_probs=111.5
Q ss_pred ceEEEEecceeeccCCcceEEEEECCCCCcHHHHHHHHHHhC-CCceEEEecCccc---------------------ccc
Q 006117 49 FFIVIRACQLLAQKNHGIILVGVAGPSGAGKTVFTEKVLNFM-PSIAVITMDNYND---------------------SSR 106 (660)
Q Consensus 49 ~~~vL~~Isl~i~~ge~~~IIGI~GpSGSGKSTLak~L~~lL-p~~g~I~lDg~~~---------------------~~~ 106 (660)
...++++|+|.+++|+ ++||+|+||||||||+++|++++ |..|.|.+++... ...
T Consensus 28 ~~~~l~~is~~v~~Ge---~~~lvG~nGsGKSTLl~~l~Gll~p~~G~i~~~g~~~~~~~~~~~~~~~~~~~~~~~~r~~ 104 (623)
T PRK10261 28 KIAAVRNLSFSLQRGE---TLAIVGESGSGKSVTALALMRLLEQAGGLVQCDKMLLRRRSRQVIELSEQSAAQMRHVRGA 104 (623)
T ss_pred ceeEEEeeEEEECCCC---EEEEECCCCChHHHHHHHHHcCCCCCCeEEEECCEEeccccccccccccCCHHHHHHHhCC
Confidence 4579999999999999 99999999999999999999998 7889998876311 012
Q ss_pred cccccCCCC--CCCchhhHHHHHHhhh---cC--------------cccccc----cccccccccccceeeecCCccEEE
Q 006117 107 IIDGNFDDP--RLTDYDTLLENIRGLK---EG--------------KAVQVP----IYDFKSSSRIGYRTLEVPSSRIVI 163 (660)
Q Consensus 107 ~i~~vfq~p--~l~d~~tl~e~L~~L~---~G--------------k~I~~P----iyD~s~~~rs~~~~~~v~~a~VVI 163 (660)
.++++||+| .+++..++.+++.... .+ +.+..+ ..+...++.++++.+++..+..++
T Consensus 105 ~ig~v~Q~~~~~l~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~l~~~gL~~~~~~~~~~~~~LSgGq~QRv~iA~AL~ 184 (623)
T PRK10261 105 DMAMIFQEPMTSLNPVFTVGEQIAESIRLHQGASREEAMVEAKRMLDQVRIPEAQTILSRYPHQLSGGMRQRVMIAMALS 184 (623)
T ss_pred CEEEEEeCchhhcCCCCCHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHCCCCChhhHHhCCCccCCHHHHHHHHHHHHHh
Confidence 478999998 5677788888875421 11 011222 134455667788888999999999
Q ss_pred EecceeecccccCCCCEEEEEEcChhHHHHHHHHHHHHH-hCCCH
Q 006117 164 IEGIYALSEKLRPLIDLRVSVTGGVHFDLVKRVFRDIQR-VGQEP 207 (660)
Q Consensus 164 VEGilaL~deLr~llDlkIfVdad~dirLiRRI~RDv~e-RGrs~ 207 (660)
.++.+++.||+...+|. .....+..+.+++.+ .|.++
T Consensus 185 ~~P~lLllDEPt~~LD~-------~~~~~l~~ll~~l~~~~g~tv 222 (623)
T PRK10261 185 CRPAVLIADEPTTALDV-------TIQAQILQLIKVLQKEMSMGV 222 (623)
T ss_pred CCCCEEEEeCCCCccCH-------HHHHHHHHHHHHHHHhcCCEE
Confidence 99999999999999997 344445556666543 36554
No 185
>PF01928 CYTH: CYTH domain; InterPro: IPR008172 The CYTH domain is an ancient enzymatic domain that was present in the Last Universal Common Ancestor and was involved in nucleotide or organic phosphate metabolism []. It is found in a variety of enzymes, including thiamine-triphosphatase and the CyaB-like adenlyl cyclases []. Structurally, this domain consists mainly of antiparallel beta sheets that form a wide barrel with a channel running through it.; GO: 0006796 phosphate-containing compound metabolic process; PDB: 2DC4_B 3SY3_A 3TJ7_D 3N10_A 3N0Z_A 3N0Y_A 2FJT_A 2GFG_A 2EEN_A 2ACA_B ....
Probab=99.33 E-value=1.2e-11 Score=120.69 Aligned_cols=131 Identities=25% Similarity=0.368 Sum_probs=107.8
Q ss_pred ccccceeeeeecCCCCCcccccceEEEeec-CCeEEEEEeeeecCCCceeeeeEEEEee-----------hhhHHHHhhc
Q 006117 275 ETTEETYDIYLLPPGEDPDACQSYLRMRNR-DGKYNLMFEEWVTDSPFIISPRITFEVS-----------VRLLGGLMAL 342 (660)
Q Consensus 275 ~~~~~~~DIYl~pP~~d~~~tde~LRvR~~-dg~~~Ltykg~~~d~~fi~rp~~efeV~-----------v~~~~gL~~L 342 (660)
.....+.|+||.+|..++...+.|||+|.. ++...+|||+|..+.+ +++.++.|+ ..+...|..+
T Consensus 30 ~~~~~~~d~Y~dt~~~~L~~~~~~lRiR~~~~~~~~lTlK~~~~~~~---~~e~~~~~~r~e~e~~i~~~~~~~~~l~~l 106 (185)
T PF01928_consen 30 PKEEHQTDTYFDTPDRDLRKAGIALRIRRENGDGWYLTLKGPGSDGP---REEIEFEVSREEYEAPISDAEEMREILEAL 106 (185)
T ss_dssp EEEEEEEEEEEEETTTHHHHTTSEEEEEEETTTEEEEEEEEESSSSS---EEEEEEEESHHCCEEEHSHHHHHHHHHHHT
T ss_pred CeEEEEEEEEEeCCChhHHhCCcEEEEEeecCCccEEEEEccCccCc---ccccceeecchhhhccccchHHHHHHHHHh
Confidence 344456699999999999999999999964 6666699999999987 566666664 2346778999
Q ss_pred CCeEEEEEEEeeeEeecCcEEEEeeccccc-CcceEEEEec--cHHHHHHHHHH-------cCCCC-CccchhhHHHH
Q 006117 343 GYTIATILKRSSHIFYDDRVCVKTDWLEQL-NRKYVQVQGR--DRLYVKYVGEQ-------LGLDG-SYVPRTYIEQI 409 (660)
Q Consensus 343 Gy~~aa~V~R~re~y~~g~~~i~lD~ve~L-g~~FveI~g~--~~~~v~~~~~~-------Lgl~G-~~i~kSYLEli 409 (660)
||.+.+.+.+.|..|..+++.|++|+++++ | .|+||+.. +.+.+.+++.+ ||+.. +.++++|++|+
T Consensus 107 ~l~~~~~~~k~R~~~~~~~~~v~lD~~~~~~~-~~~EiE~~~~~~~~~~~~~~~i~~~~~~l~~~~~s~~~r~y~~l~ 183 (185)
T PF01928_consen 107 GLRPVARIEKKRRSYRLEGVEVELDEVDGLPG-TFLEIEIESEDEEDLKEAAEEILALLNELGISENSKIERSYLELL 183 (185)
T ss_dssp TCEEEEEEEEEEEEEEETTEEEEEEEETTTTE-EEEEEEEEESSHHHHHHHHHHHHHHHHHTTEEGGGBHHSHHHHHC
T ss_pred cCceeEEEEEEEEEEEECCEEEEEEEEecceE-EEEEEEEcCCCHhHHHHHHHHHHHHhhhcCCCccchHHHHHHHhh
Confidence 999999999999999999999999999999 7 89999444 55555555555 99987 66999999886
No 186
>PRK13549 xylose transporter ATP-binding subunit; Provisional
Probab=99.33 E-value=1.8e-12 Score=145.94 Aligned_cols=158 Identities=13% Similarity=0.070 Sum_probs=116.8
Q ss_pred cceeeeecCceEEEEecceeeccCCcceEEEEECCCCCcHHHHHHHHHHhC-C--CceEEEecCcccc--------cccc
Q 006117 40 EDTLSFEKGFFIVIRACQLLAQKNHGIILVGVAGPSGAGKTVFTEKVLNFM-P--SIAVITMDNYNDS--------SRII 108 (660)
Q Consensus 40 ~~~ls~~~g~~~vL~~Isl~i~~ge~~~IIGI~GpSGSGKSTLak~L~~lL-p--~~g~I~lDg~~~~--------~~~i 108 (660)
.+++++.++...+++++||.+++|+ ++||+||||||||||+++|++++ | +.|.|.++|.... .+.+
T Consensus 8 ~~nl~~~~~~~~il~~isl~i~~Ge---~~~l~G~nGsGKSTLl~~l~Gl~~~~~~~G~i~~~g~~~~~~~~~~~~~~~i 84 (506)
T PRK13549 8 MKNITKTFGGVKALDNVSLKVRAGE---IVSLCGENGAGKSTLMKVLSGVYPHGTYEGEIIFEGEELQASNIRDTERAGI 84 (506)
T ss_pred EeeeEEEeCCeEeecceeEEEeCCe---EEEEECCCCCCHHHHHHHHhCCCCCCCCCeEEEECCEECCCCCHHHHHHCCe
Confidence 3555566666789999999999999 99999999999999999999998 4 6999999986432 1347
Q ss_pred cccCCCCCCCchhhHHHHHHhhhc----Cc--------c-------cccc-cccccccccccceeeecCCccEEEEecce
Q 006117 109 DGNFDDPRLTDYDTLLENIRGLKE----GK--------A-------VQVP-IYDFKSSSRIGYRTLEVPSSRIVIIEGIY 168 (660)
Q Consensus 109 ~~vfq~p~l~d~~tl~e~L~~L~~----Gk--------~-------I~~P-iyD~s~~~rs~~~~~~v~~a~VVIVEGil 168 (660)
+++||++.+++..++.+++..... +. . +..+ ..+...+..++++.+++..+..++.++.+
T Consensus 85 ~~v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgGqkqrv~la~al~~~p~l 164 (506)
T PRK13549 85 AIIHQELALVKELSVLENIFLGNEITPGGIMDYDAMYLRAQKLLAQLKLDINPATPVGNLGLGQQQLVEIAKALNKQARL 164 (506)
T ss_pred EEEEeccccCCCCcHHHHhhhcccccccCCcCHHHHHHHHHHHHHHcCCCCCcccchhhCCHHHHHHHHHHHHHhcCCCE
Confidence 899999988888899998864211 10 0 0111 12333445667788888999999999999
Q ss_pred eecccccCCCCEEEEEEcChhHHHHHHHHHHHHHhCCCH
Q 006117 169 ALSEKLRPLIDLRVSVTGGVHFDLVKRVFRDIQRVGQEP 207 (660)
Q Consensus 169 aL~deLr~llDlkIfVdad~dirLiRRI~RDv~eRGrs~ 207 (660)
++.||+...+|. .....+..+.+++...|.+.
T Consensus 165 llLDEPt~~LD~-------~~~~~l~~~l~~l~~~~~tv 196 (506)
T PRK13549 165 LILDEPTASLTE-------SETAVLLDIIRDLKAHGIAC 196 (506)
T ss_pred EEEeCCCCCCCH-------HHHHHHHHHHHHHHHCCCEE
Confidence 999999999997 33444445555554445543
No 187
>PRK13649 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=99.33 E-value=1.6e-12 Score=135.40 Aligned_cols=127 Identities=15% Similarity=0.216 Sum_probs=96.3
Q ss_pred eEEEEecceeeccCCcceEEEEECCCCCcHHHHHHHHHHhC-CCceEEEecCcccc-----------cccccccCCCC--
Q 006117 50 FIVIRACQLLAQKNHGIILVGVAGPSGAGKTVFTEKVLNFM-PSIAVITMDNYNDS-----------SRIIDGNFDDP-- 115 (660)
Q Consensus 50 ~~vL~~Isl~i~~ge~~~IIGI~GpSGSGKSTLak~L~~lL-p~~g~I~lDg~~~~-----------~~~i~~vfq~p-- 115 (660)
..++++++|.+++|+ ++||+|+||||||||+++|++++ |..|.|.++|.... .+.+++++|++
T Consensus 20 ~~~l~~is~~i~~Ge---~~~l~G~nGsGKSTLl~~i~Gl~~p~~G~i~~~g~~i~~~~~~~~~~~~~~~i~~~~q~~~~ 96 (280)
T PRK13649 20 GRALFDVNLTIEDGS---YTAFIGHTGSGKSTIMQLLNGLHVPTQGSVRVDDTLITSTSKNKDIKQIRKKVGLVFQFPES 96 (280)
T ss_pred cceeeeeEEEEcCCc---EEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEEccccccccCHHHHHhheEEEeeChhh
Confidence 369999999999999 99999999999999999999998 88999999986432 13478899987
Q ss_pred CCCchhhHHHHHHhhhc--C---c-----------ccccc--cccccccccccceeeecCCccEEEEecceeecccccCC
Q 006117 116 RLTDYDTLLENIRGLKE--G---K-----------AVQVP--IYDFKSSSRIGYRTLEVPSSRIVIIEGIYALSEKLRPL 177 (660)
Q Consensus 116 ~l~d~~tl~e~L~~L~~--G---k-----------~I~~P--iyD~s~~~rs~~~~~~v~~a~VVIVEGilaL~deLr~l 177 (660)
.+++ .++.+++..... + . ..... ..+......++++.+++..+..++.++.+++.||+...
T Consensus 97 ~~~~-~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgG~~qrv~la~al~~~p~lllLDEPt~~ 175 (280)
T PRK13649 97 QLFE-ETVLKDVAFGPQNFGVSQEEAEALAREKLALVGISESLFEKNPFELSGGQMRRVAIAGILAMEPKILVLDEPTAG 175 (280)
T ss_pred hhcc-ccHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCChhhhhCCcccCCHHHHHHHHHHHHHHcCCCEEEEeCCccc
Confidence 3454 588888753210 1 0 01111 12333344566777888888999999999999999999
Q ss_pred CCE
Q 006117 178 IDL 180 (660)
Q Consensus 178 lDl 180 (660)
+|.
T Consensus 176 LD~ 178 (280)
T PRK13649 176 LDP 178 (280)
T ss_pred CCH
Confidence 997
No 188
>TIGR02324 CP_lyasePhnL phosphonate C-P lyase system protein PhnL. Members of this family are the PhnL protein of C-P lyase systems for utilization of phosphonates. These systems resemble phosphonatase-based systems in having a three component ABC transporter, where TIGR01097 is the permease, TIGR01098 is the phosphonates binding protein, and TIGR02315 is the ATP-binding cassette (ABC) protein. They differ, however, in having, typically, ten or more additional genes, many of which are believed to form a membrane-associated C-P lysase complex. This protein (PhnL) and the adjacent-encoded PhnK (TIGR02323) resemble transporter ATP-binding proteins but are suggested, based on mutatgenesis studies, to be part of this C-P lyase complex rather than part of a transporter per se.
Probab=99.33 E-value=2.4e-12 Score=129.34 Aligned_cols=147 Identities=18% Similarity=0.219 Sum_probs=104.6
Q ss_pred eEEEEecceeeccCCcceEEEEECCCCCcHHHHHHHHHHhC-CCceEEEec--Cc--ccc-----------cccccccCC
Q 006117 50 FIVIRACQLLAQKNHGIILVGVAGPSGAGKTVFTEKVLNFM-PSIAVITMD--NY--NDS-----------SRIIDGNFD 113 (660)
Q Consensus 50 ~~vL~~Isl~i~~ge~~~IIGI~GpSGSGKSTLak~L~~lL-p~~g~I~lD--g~--~~~-----------~~~i~~vfq 113 (660)
..++++++|.+.+|+ ++||+|+||||||||+++|++.+ |..|.|.++ |. ... .+.+++++|
T Consensus 21 ~~il~~vs~~i~~Ge---~~~l~G~nGsGKSTLl~~i~G~~~~~~G~i~~~~~g~~~~~~~~~~~~~~~~~~~~i~~~~q 97 (224)
T TIGR02324 21 LPVLKNVSLTVNAGE---CVALSGPSGAGKSTLLKSLYANYLPDSGRILVRHEGAWVDLAQASPREVLEVRRKTIGYVSQ 97 (224)
T ss_pred eEEEecceEEECCCC---EEEEECCCCCCHHHHHHHHhCCCCCCCCeEEEecCCCccchhhcCHHHHHHHHhcceEEEec
Confidence 479999999999999 99999999999999999999998 789999997 31 211 134789999
Q ss_pred CCCCCchhhHHHHHHhh-h-cCc-------c-------ccccc--ccccccccccceeeecCCccEEEEecceeeccccc
Q 006117 114 DPRLTDYDTLLENIRGL-K-EGK-------A-------VQVPI--YDFKSSSRIGYRTLEVPSSRIVIIEGIYALSEKLR 175 (660)
Q Consensus 114 ~p~l~d~~tl~e~L~~L-~-~Gk-------~-------I~~Pi--yD~s~~~rs~~~~~~v~~a~VVIVEGilaL~deLr 175 (660)
++.+++..++.+++... . .+. . ...+. .+......++++.+++..++.++.++.+++.||+.
T Consensus 98 ~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LS~G~~qrl~laral~~~p~llllDEPt 177 (224)
T TIGR02324 98 FLRVIPRVSALEVVAEPLLERGVPREAARARARELLARLNIPERLWHLPPATFSGGEQQRVNIARGFIADYPILLLDEPT 177 (224)
T ss_pred ccccCCCccHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCchhhhhCCcccCCHHHHHHHHHHHHHhcCCCEEEEcCCc
Confidence 99888888888887531 1 110 0 01111 12233445566777788888899999999999999
Q ss_pred CCCCEEEEEEcChhHHHHHHHHHHHHHhCCC
Q 006117 176 PLIDLRVSVTGGVHFDLVKRVFRDIQRVGQE 206 (660)
Q Consensus 176 ~llDlkIfVdad~dirLiRRI~RDv~eRGrs 206 (660)
..+|. ...+.+..+.+...+.|.+
T Consensus 178 ~~LD~-------~~~~~l~~~l~~~~~~g~t 201 (224)
T TIGR02324 178 ASLDA-------ANRQVVVELIAEAKARGAA 201 (224)
T ss_pred ccCCH-------HHHHHHHHHHHHHHhcCCE
Confidence 99997 3333444444444444443
No 189
>PRK10253 iron-enterobactin transporter ATP-binding protein; Provisional
Probab=99.33 E-value=2.3e-12 Score=133.41 Aligned_cols=138 Identities=17% Similarity=0.208 Sum_probs=104.8
Q ss_pred cceeeeecCceEEEEecceeeccCCcceEEEEECCCCCcHHHHHHHHHHhC-CCceEEEecCccccc-------cccccc
Q 006117 40 EDTLSFEKGFFIVIRACQLLAQKNHGIILVGVAGPSGAGKTVFTEKVLNFM-PSIAVITMDNYNDSS-------RIIDGN 111 (660)
Q Consensus 40 ~~~ls~~~g~~~vL~~Isl~i~~ge~~~IIGI~GpSGSGKSTLak~L~~lL-p~~g~I~lDg~~~~~-------~~i~~v 111 (660)
.+++++.++...++++++|.+.+|+ ++||+|+||||||||+++|++++ |..|.|.++|..... ..++++
T Consensus 10 i~~l~~~~~~~~~l~~isl~i~~Ge---~~~i~G~nGsGKSTLl~~i~G~~~~~~G~i~~~g~~~~~~~~~~~~~~i~~v 86 (265)
T PRK10253 10 GEQLTLGYGKYTVAENLTVEIPDGH---FTAIIGPNGCGKSTLLRTLSRLMTPAHGHVWLDGEHIQHYASKEVARRIGLL 86 (265)
T ss_pred EEEEEEEECCEEEeeecceEECCCC---EEEEECCCCCCHHHHHHHHcCCCCCCCcEEEECCEEhhhCCHHHHhhheEEe
Confidence 4555566666789999999999999 99999999999999999999998 789999999874321 347899
Q ss_pred CCCCCCCchhhHHHHHHhhh--c-------Cc----c-------ccc-ccccccccccccceeeecCCccEEEEecceee
Q 006117 112 FDDPRLTDYDTLLENIRGLK--E-------GK----A-------VQV-PIYDFKSSSRIGYRTLEVPSSRIVIIEGIYAL 170 (660)
Q Consensus 112 fq~p~l~d~~tl~e~L~~L~--~-------Gk----~-------I~~-PiyD~s~~~rs~~~~~~v~~a~VVIVEGilaL 170 (660)
||++.+++..++.+++.... . .+ . +.. ...+......++++.+++..++.++..+.+++
T Consensus 87 ~q~~~~~~~~tv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~Gq~qrv~laral~~~p~lll 166 (265)
T PRK10253 87 AQNATTPGDITVQELVARGRYPHQPLFTRWRKEDEEAVTKAMQATGITHLADQSVDTLSGGQRQRAWIAMVLAQETAIML 166 (265)
T ss_pred eccCcCCCCCcHHHHHHhCcccccccccCCCHHHHHHHHHHHHHcCCHHHhcCCcccCChHHHHHHHHHHHHhcCCCEEE
Confidence 99998887778888875421 0 00 0 000 11223334455667778888888999999999
Q ss_pred cccccCCCCE
Q 006117 171 SEKLRPLIDL 180 (660)
Q Consensus 171 ~deLr~llDl 180 (660)
.||+...+|.
T Consensus 167 lDEPt~gLD~ 176 (265)
T PRK10253 167 LDEPTTWLDI 176 (265)
T ss_pred EeCccccCCH
Confidence 9999999997
No 190
>PRK13639 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=99.33 E-value=1.6e-12 Score=135.49 Aligned_cols=156 Identities=16% Similarity=0.202 Sum_probs=109.5
Q ss_pred ceeeeecC-ceEEEEecceeeccCCcceEEEEECCCCCcHHHHHHHHHHhC-CCceEEEecCcccc---------ccccc
Q 006117 41 DTLSFEKG-FFIVIRACQLLAQKNHGIILVGVAGPSGAGKTVFTEKVLNFM-PSIAVITMDNYNDS---------SRIID 109 (660)
Q Consensus 41 ~~ls~~~g-~~~vL~~Isl~i~~ge~~~IIGI~GpSGSGKSTLak~L~~lL-p~~g~I~lDg~~~~---------~~~i~ 109 (660)
+++++.++ ...++++++|.+.+|+ ++||+|+||||||||+++|++++ |..|.|.++|.... .+.++
T Consensus 5 ~~l~~~~~~~~~~l~~vsl~i~~Ge---~~~l~G~nGsGKSTLl~~i~Gl~~~~~G~i~~~g~~~~~~~~~~~~~~~~i~ 81 (275)
T PRK13639 5 RDLKYSYPDGTEALKGINFKAEKGE---MVALLGPNGAGKSTLFLHFNGILKPTSGEVLIKGEPIKYDKKSLLEVRKTVG 81 (275)
T ss_pred EEEEEEeCCCCeeeeeeEEEEcCCC---EEEEECCCCCCHHHHHHHHhCCCCCCccEEEECCEECccccchHHHHHhheE
Confidence 44455553 3469999999999999 99999999999999999999998 78999999997542 13478
Q ss_pred ccCCCCC--CCchhhHHHHHHhhhc--Cc--------------cccc-ccccccccccccceeeecCCccEEEEecceee
Q 006117 110 GNFDDPR--LTDYDTLLENIRGLKE--GK--------------AVQV-PIYDFKSSSRIGYRTLEVPSSRIVIIEGIYAL 170 (660)
Q Consensus 110 ~vfq~p~--l~d~~tl~e~L~~L~~--Gk--------------~I~~-PiyD~s~~~rs~~~~~~v~~a~VVIVEGilaL 170 (660)
++||++. +++ .++.+++..... +. .+.. ...+...+..++++..++..++.++.++.+++
T Consensus 82 ~v~q~~~~~~~~-~tv~e~i~~~~~~~~~~~~~~~~~~~~~l~~~~L~~~~~~~~~~LS~Gq~qrv~laral~~~p~lll 160 (275)
T PRK13639 82 IVFQNPDDQLFA-PTVEEDVAFGPLNLGLSKEEVEKRVKEALKAVGMEGFENKPPHHLSGGQKKRVAIAGILAMKPEIIV 160 (275)
T ss_pred EEeeChhhhhcc-ccHHHHHHHHHHHcCCCHHHHHHHHHHHHHHCCCchhhcCChhhCCHHHHHHHHHHHHHhcCCCEEE
Confidence 9999873 343 588888753110 10 0011 11233344456667777888889999999999
Q ss_pred cccccCCCCEEEEEEcChhHHHHHHHHHHHHHhCCCH
Q 006117 171 SEKLRPLIDLRVSVTGGVHFDLVKRVFRDIQRVGQEP 207 (660)
Q Consensus 171 ~deLr~llDlkIfVdad~dirLiRRI~RDv~eRGrs~ 207 (660)
.||+...+|. ...+.+.++.+.+.+.|.+.
T Consensus 161 lDEPt~gLD~-------~~~~~l~~~l~~l~~~~~ti 190 (275)
T PRK13639 161 LDEPTSGLDP-------MGASQIMKLLYDLNKEGITI 190 (275)
T ss_pred EeCCCcCCCH-------HHHHHHHHHHHHHHHCCCEE
Confidence 9999999997 33344444555544445543
No 191
>PRK14235 phosphate transporter ATP-binding protein; Provisional
Probab=99.33 E-value=3.3e-12 Score=132.46 Aligned_cols=139 Identities=16% Similarity=0.119 Sum_probs=104.9
Q ss_pred eccceeeeecCceEEEEecceeeccCCcceEEEEECCCCCcHHHHHHHHHHhC-C-----CceEEEecCcccc-------
Q 006117 38 PIEDTLSFEKGFFIVIRACQLLAQKNHGIILVGVAGPSGAGKTVFTEKVLNFM-P-----SIAVITMDNYNDS------- 104 (660)
Q Consensus 38 ~~~~~ls~~~g~~~vL~~Isl~i~~ge~~~IIGI~GpSGSGKSTLak~L~~lL-p-----~~g~I~lDg~~~~------- 104 (660)
...+++++.++...++++++|.+++|+ ++||+|+||||||||+++|++++ | ..|.|.++|....
T Consensus 20 l~~~nl~~~~~~~~il~~isl~i~~Ge---~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~I~~~g~~i~~~~~~~~ 96 (267)
T PRK14235 20 MRARDVSVFYGEKQALFDVDLDIPEKT---VTAFIGPSGCGKSTFLRCLNRMNDTIDGCRVTGKITLDGEDIYDPRLDVV 96 (267)
T ss_pred EEEEeEEEEECCEEEEEEEEEEEcCCC---EEEEECCCCCCHHHHHHHHHhhcccccCCCCceEEEECCEECcccccchH
Confidence 334556666666789999999999999 99999999999999999999997 3 6899999996532
Q ss_pred --cccccccCCCCCCCchhhHHHHHHhhhc--C-----cc-----------cccc-----cccccccccccceeeecCCc
Q 006117 105 --SRIIDGNFDDPRLTDYDTLLENIRGLKE--G-----KA-----------VQVP-----IYDFKSSSRIGYRTLEVPSS 159 (660)
Q Consensus 105 --~~~i~~vfq~p~l~d~~tl~e~L~~L~~--G-----k~-----------I~~P-----iyD~s~~~rs~~~~~~v~~a 159 (660)
.+.+++++|++.+++. ++.+++..... + .. +... .++......++++.+++..+
T Consensus 97 ~~~~~i~~v~q~~~~~~~-tv~enl~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~LSgGq~qrv~la 175 (267)
T PRK14235 97 ELRARVGMVFQKPNPFPK-SIYENVAYGPRIHGLARSKAELDEIVETSLRKAGLWEEVKDRLHEPGTGLSGGQQQRLCIA 175 (267)
T ss_pred HHhhceEEEecCCCCCCC-cHHHHHHHHHHhcccccchHHHHHHHHHHHHHcCCchhhhHHhhCCcccCCHHHHHHHHHH
Confidence 1347889999988874 88888853210 1 00 0110 12223344566777888888
Q ss_pred cEEEEecceeecccccCCCCE
Q 006117 160 RIVIIEGIYALSEKLRPLIDL 180 (660)
Q Consensus 160 ~VVIVEGilaL~deLr~llDl 180 (660)
+.++.++.+++.||+...+|.
T Consensus 176 ral~~~p~lllLDEPt~~LD~ 196 (267)
T PRK14235 176 RAIAVSPEVILMDEPCSALDP 196 (267)
T ss_pred HHHHcCCCEEEEeCCCcCCCH
Confidence 999999999999999999997
No 192
>PRK14255 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.33 E-value=2.8e-12 Score=131.34 Aligned_cols=137 Identities=18% Similarity=0.233 Sum_probs=103.1
Q ss_pred cceeeeecCceEEEEecceeeccCCcceEEEEECCCCCcHHHHHHHHHHhC---C---CceEEEecCcccc---------
Q 006117 40 EDTLSFEKGFFIVIRACQLLAQKNHGIILVGVAGPSGAGKTVFTEKVLNFM---P---SIAVITMDNYNDS--------- 104 (660)
Q Consensus 40 ~~~ls~~~g~~~vL~~Isl~i~~ge~~~IIGI~GpSGSGKSTLak~L~~lL---p---~~g~I~lDg~~~~--------- 104 (660)
.+++++.++...++++++|.+.+|+ ++||+|+||||||||+++|+++. | ..|.|.++|....
T Consensus 8 ~~~l~~~~~~~~~l~~vs~~i~~Ge---~~~l~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~i~~~g~~~~~~~~~~~~~ 84 (252)
T PRK14255 8 SSDVHLFYGKFEALKGIDLDFNQNE---ITALIGPSGCGKSTYLRTLNRMNDLIPGVTITGNVSLRGQNIYAPNEDVVQL 84 (252)
T ss_pred EEeEEEEECCeeEEecceEEEcCCC---EEEEECCCCCCHHHHHHHHhcccccCCCCCcccEEEEcCEEcccccccHHHh
Confidence 4555566666789999999999999 99999999999999999999985 3 3899999987431
Q ss_pred cccccccCCCCCCCchhhHHHHHHhhh--cC--c------cc-------cc-----ccccccccccccceeeecCCccEE
Q 006117 105 SRIIDGNFDDPRLTDYDTLLENIRGLK--EG--K------AV-------QV-----PIYDFKSSSRIGYRTLEVPSSRIV 162 (660)
Q Consensus 105 ~~~i~~vfq~p~l~d~~tl~e~L~~L~--~G--k------~I-------~~-----PiyD~s~~~rs~~~~~~v~~a~VV 162 (660)
.+.+++++|++.+++ .++.+++.... .+ . .+ .. ...+...+..++++.+++..++.+
T Consensus 85 ~~~i~~~~q~~~~~~-~tv~~nl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~i~~~~~~~~~~LS~Gq~qrv~laral 163 (252)
T PRK14255 85 RKQVGMVFQQPNPFP-FSIYENVIYGLRLAGVKDKAVLDEAVETSLKQAAIWDEVKDHLHESALSLSGGQQQRVCIARVL 163 (252)
T ss_pred cCeEEEEECCCccCC-CcHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHcCCccchhhHHhcCcccCCHHHHHHHHHHHHH
Confidence 135789999998887 58888876321 11 0 00 00 112233344556777788888899
Q ss_pred EEecceeecccccCCCCE
Q 006117 163 IIEGIYALSEKLRPLIDL 180 (660)
Q Consensus 163 IVEGilaL~deLr~llDl 180 (660)
+.++.+++.||+...+|.
T Consensus 164 ~~~p~llllDEPt~~LD~ 181 (252)
T PRK14255 164 AVKPDVILLDEPTSALDP 181 (252)
T ss_pred hcCCCEEEEcCCCccCCH
Confidence 999999999999999997
No 193
>TIGR02142 modC_ABC molybdenum ABC transporter, ATP-binding protein. This model represents the ATP-binding cassette (ABC) protein of the three subunit molybdate ABC transporter. The three proteins of this complex are homologous to proteins of the sulfate ABC transporter. Molybdenum may be used in nitrogenases of nitrogen-fixing bacteria and in molybdopterin cofactors. In some cases, molybdate may be transported by a sulfate transporter rather than by a specific molybdate transporter.
Probab=99.32 E-value=2.4e-12 Score=139.09 Aligned_cols=133 Identities=17% Similarity=0.170 Sum_probs=102.8
Q ss_pred eeeecCceEEEEecceeeccCCcceEEEEECCCCCcHHHHHHHHHHhC-CCceEEEecCcccc-----------cccccc
Q 006117 43 LSFEKGFFIVIRACQLLAQKNHGIILVGVAGPSGAGKTVFTEKVLNFM-PSIAVITMDNYNDS-----------SRIIDG 110 (660)
Q Consensus 43 ls~~~g~~~vL~~Isl~i~~ge~~~IIGI~GpSGSGKSTLak~L~~lL-p~~g~I~lDg~~~~-----------~~~i~~ 110 (660)
+++.++.+.+ +++|.+++|+ +++|+||||||||||+++|++++ |+.|.|.++|.... .+.+++
T Consensus 5 l~~~~~~~~~--~isl~i~~Ge---i~~l~G~nGsGKSTLl~~iaGl~~p~~G~I~~~g~~i~~~~~~~~~~~~~~~i~~ 79 (354)
T TIGR02142 5 FSKRLGDFSL--DADFTLPGQG---VTAIFGRSGSGKTTLIRLIAGLTRPDEGEIVLNGRTLFDSRKGIFLPPEKRRIGY 79 (354)
T ss_pred EEEEECCEEE--EEEEEECCCC---EEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEECccCccccccchhhCCeEE
Confidence 4455555544 8999999999 99999999999999999999998 78999999986431 235789
Q ss_pred cCCCCCCCchhhHHHHHHhhhcC---cc-----------ccc-ccccccccccccceeeecCCccEEEEecceeeccccc
Q 006117 111 NFDDPRLTDYDTLLENIRGLKEG---KA-----------VQV-PIYDFKSSSRIGYRTLEVPSSRIVIIEGIYALSEKLR 175 (660)
Q Consensus 111 vfq~p~l~d~~tl~e~L~~L~~G---k~-----------I~~-PiyD~s~~~rs~~~~~~v~~a~VVIVEGilaL~deLr 175 (660)
+||++.+|+..++.+++...... .. ... +..+...+..++++.+++..++.++.++.+++.||+.
T Consensus 80 v~q~~~l~~~~tv~enl~~~~~~~~~~~~~~~~~~~l~~~gL~~~~~~~~~~LSgGqkqRvalAraL~~~p~lllLDEPt 159 (354)
T TIGR02142 80 VFQEARLFPHLSVRGNLRYGMKRARPSERRISFERVIELLGIGHLLGRLPGRLSGGEKQRVAIGRALLSSPRLLLMDEPL 159 (354)
T ss_pred EecCCccCCCCcHHHHHHHHhhccChhHHHHHHHHHHHHcCChhHhcCChhhCCHHHHHHHHHHHHHHcCCCEEEEcCCC
Confidence 99999999989999998642111 00 001 1123334456677888889999999999999999999
Q ss_pred CCCCE
Q 006117 176 PLIDL 180 (660)
Q Consensus 176 ~llDl 180 (660)
..+|.
T Consensus 160 s~LD~ 164 (354)
T TIGR02142 160 AALDD 164 (354)
T ss_pred cCCCH
Confidence 99997
No 194
>COG2274 SunT ABC-type bacteriocin/lantibiotic exporters, contain an N-terminal double-glycine peptidase domain [Defense mechanisms]
Probab=99.32 E-value=6.3e-13 Score=154.83 Aligned_cols=136 Identities=21% Similarity=0.277 Sum_probs=107.7
Q ss_pred ceeeeecCce--EEEEecceeeccCCcceEEEEECCCCCcHHHHHHHHHHhC-CCceEEEecCccccc-------ccccc
Q 006117 41 DTLSFEKGFF--IVIRACQLLAQKNHGIILVGVAGPSGAGKTVFTEKVLNFM-PSIAVITMDNYNDSS-------RIIDG 110 (660)
Q Consensus 41 ~~ls~~~g~~--~vL~~Isl~i~~ge~~~IIGI~GpSGSGKSTLak~L~~lL-p~~g~I~lDg~~~~~-------~~i~~ 110 (660)
++++|.++.. .+|+++++.+++|+ .|||+|+||||||||+|.|.+++ |..|.|.+||++... +.+++
T Consensus 475 ~nvsf~y~~~~~~vL~~isL~I~~Ge---~vaIvG~SGsGKSTL~KLL~gly~p~~G~I~~dg~dl~~i~~~~lR~~ig~ 551 (709)
T COG2274 475 ENVSFRYGPDDPPVLEDLSLEIPPGE---KVAIVGRSGSGKSTLLKLLLGLYKPQQGRILLDGVDLNDIDLASLRRQVGY 551 (709)
T ss_pred EEEEEEeCCCCcchhhceeEEeCCCC---EEEEECCCCCCHHHHHHHHhcCCCCCCceEEECCEeHHhcCHHHHHhheeE
Confidence 4555555544 79999999999999 99999999999999999999999 999999999996543 56899
Q ss_pred cCCCCCCCchhhHHHHHHhhhcC----------------ccc-ccc-cccccccc----cccceeeecCCccEEEEecce
Q 006117 111 NFDDPRLTDYDTLLENIRGLKEG----------------KAV-QVP-IYDFKSSS----RIGYRTLEVPSSRIVIIEGIY 168 (660)
Q Consensus 111 vfq~p~l~d~~tl~e~L~~L~~G----------------k~I-~~P-iyD~s~~~----rs~~~~~~v~~a~VVIVEGil 168 (660)
+.|++.+|. .++.||+..-... +.+ ..| -|+...++ .++++++++..++.++-++..
T Consensus 552 V~Q~~~Lf~-gSI~eNi~l~~p~~~~e~i~~A~~~ag~~~fI~~lP~gy~t~v~E~G~~LSGGQrQrlalARaLl~~P~I 630 (709)
T COG2274 552 VLQDPFLFS-GSIRENIALGNPEATDEEIIEAAQLAGAHEFIENLPMGYDTPVGEGGANLSGGQRQRLALARALLSKPKI 630 (709)
T ss_pred Ecccchhhc-CcHHHHHhcCCCCCCHHHHHHHHHHhCcHHHHHhcccccccccccCCCCCCHHHHHHHHHHHHhccCCCE
Confidence 999998876 5777777532211 111 123 34444432 567899999999999999999
Q ss_pred eecccccCCCCE
Q 006117 169 ALSEKLRPLIDL 180 (660)
Q Consensus 169 aL~deLr~llDl 180 (660)
++.||....+|.
T Consensus 631 LlLDEaTSaLD~ 642 (709)
T COG2274 631 LLLDEATSALDP 642 (709)
T ss_pred EEEeCcccccCH
Confidence 999999999997
No 195
>cd03260 ABC_PstB_phosphate_transporter Phosphate uptake is of fundamental importance in the cell physiology of bacteria because phosphate is required as a nutrient. The Pst system of E. coli comprises four distinct subunits encoded by the pstS, pstA, pstB, and pstC genes. The PstS protein is a phosphate-binding protein located in the periplasmic space. P stA and PstC are hydrophobic and they form the transmembrane portion of the Pst system. PstB is the catalytic subunit, which couples the energy of ATP hydrolysis to the import of phosphate across cellular membranes through the Pst system, often referred as ABC-protein. PstB belongs to one of the largest superfamilies of proteins characterized by a highly conserved adenosine triphosphate (ATP) binding cassette (ABC), which is also a nucleotide binding domain (NBD).
Probab=99.32 E-value=2.2e-12 Score=129.99 Aligned_cols=136 Identities=16% Similarity=0.154 Sum_probs=102.9
Q ss_pred ceeeeecCceEEEEecceeeccCCcceEEEEECCCCCcHHHHHHHHHHhC------CCceEEEecCcccc---------c
Q 006117 41 DTLSFEKGFFIVIRACQLLAQKNHGIILVGVAGPSGAGKTVFTEKVLNFM------PSIAVITMDNYNDS---------S 105 (660)
Q Consensus 41 ~~ls~~~g~~~vL~~Isl~i~~ge~~~IIGI~GpSGSGKSTLak~L~~lL------p~~g~I~lDg~~~~---------~ 105 (660)
+++++.++...++++++|.+++|+ ++||+|+||||||||+++|++++ |..|.|.++|.... .
T Consensus 4 ~~l~~~~~~~~~l~~vsl~i~~Ge---~~~i~G~nGsGKSTLl~~i~G~~~~~~~~~~~G~i~~~g~~~~~~~~~~~~~~ 80 (227)
T cd03260 4 RDLNVYYGDKHALKDISLDIPKGE---ITALIGPSGCGKSTLLRLLNRLNDLIPGAPDEGEVLLDGKDIYDLDVDVLELR 80 (227)
T ss_pred EEEEEEcCCceeeeeeEEEEcCCC---EEEEECCCCCCHHHHHHHHHhhcccccCCCCCeEEEECCEEhhhcchHHHHHH
Confidence 455566666679999999999999 99999999999999999999997 47899999997432 1
Q ss_pred ccccccCCCCCCCchhhHHHHHHhhhc--C--------cc-------cccc-ccccc--ccccccceeeecCCccEEEEe
Q 006117 106 RIIDGNFDDPRLTDYDTLLENIRGLKE--G--------KA-------VQVP-IYDFK--SSSRIGYRTLEVPSSRIVIIE 165 (660)
Q Consensus 106 ~~i~~vfq~p~l~d~~tl~e~L~~L~~--G--------k~-------I~~P-iyD~s--~~~rs~~~~~~v~~a~VVIVE 165 (660)
+.++++||++.++ ..++.+++..... + .. .... ..+.. ....++++.+++..+..++.+
T Consensus 81 ~~i~~~~q~~~~~-~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~LSgG~~qrv~la~al~~~ 159 (227)
T cd03260 81 RRVGMVFQKPNPF-PGSIYDNVAYGLRLHGIKLKEELDERVEEALRKAALWDEVKDRLHALGLSGGQQQRLCLARALANE 159 (227)
T ss_pred hhEEEEecCchhc-cccHHHHHHhHHHhcCCCcHHHHHHHHHHHHHHcCCChHHhccCCcccCCHHHHHHHHHHHHHhcC
Confidence 3478899999888 6788888753211 1 00 0011 11222 245566777788888899999
Q ss_pred cceeecccccCCCCE
Q 006117 166 GIYALSEKLRPLIDL 180 (660)
Q Consensus 166 GilaL~deLr~llDl 180 (660)
+.+++.||+...+|.
T Consensus 160 p~llllDEPt~~LD~ 174 (227)
T cd03260 160 PEVLLLDEPTSALDP 174 (227)
T ss_pred CCEEEEeCCCccCCH
Confidence 999999999999997
No 196
>PRK13644 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=99.32 E-value=1.7e-12 Score=135.27 Aligned_cols=157 Identities=14% Similarity=0.197 Sum_probs=111.8
Q ss_pred ceeeeecC-ceEEEEecceeeccCCcceEEEEECCCCCcHHHHHHHHHHhC-CCceEEEecCcccc--------cccccc
Q 006117 41 DTLSFEKG-FFIVIRACQLLAQKNHGIILVGVAGPSGAGKTVFTEKVLNFM-PSIAVITMDNYNDS--------SRIIDG 110 (660)
Q Consensus 41 ~~ls~~~g-~~~vL~~Isl~i~~ge~~~IIGI~GpSGSGKSTLak~L~~lL-p~~g~I~lDg~~~~--------~~~i~~ 110 (660)
+++++.++ ...++++++|.+++|+ ++||+|+||||||||+++|++++ |..|.|.++|.... .+.+++
T Consensus 5 ~~l~~~~~~~~~~l~~vsl~i~~Ge---~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~~i~~ 81 (274)
T PRK13644 5 ENVSYSYPDGTPALENINLVIKKGE---YIGIIGKNGSGKSTLALHLNGLLRPQKGKVLVSGIDTGDFSKLQGIRKLVGI 81 (274)
T ss_pred EEEEEEcCCCCceeeeeEEEEeCCC---EEEEECCCCCCHHHHHHHHhcCCCCCCceEEECCEECCccccHHHHHhheEE
Confidence 45555553 4569999999999999 99999999999999999999998 78999999997532 134788
Q ss_pred cCCCCCC-CchhhHHHHHHhhhc--C-------cc-------ccc-ccccccccccccceeeecCCccEEEEecceeecc
Q 006117 111 NFDDPRL-TDYDTLLENIRGLKE--G-------KA-------VQV-PIYDFKSSSRIGYRTLEVPSSRIVIIEGIYALSE 172 (660)
Q Consensus 111 vfq~p~l-~d~~tl~e~L~~L~~--G-------k~-------I~~-PiyD~s~~~rs~~~~~~v~~a~VVIVEGilaL~d 172 (660)
+||+|.. +...++.+++..... + .. +.. ...+...+..++++.+++..+..++.++.+++.|
T Consensus 82 v~q~~~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~LS~G~~qrv~laral~~~p~lllLD 161 (274)
T PRK13644 82 VFQNPETQFVGRTVEEDLAFGPENLCLPPIEIRKRVDRALAEIGLEKYRHRSPKTLSGGQGQCVALAGILTMEPECLIFD 161 (274)
T ss_pred EEEChhhhcccchHHHHHHhhHHHcCCCHHHHHHHHHHHHHHCCCHHHhcCCcccCCHHHHHHHHHHHHHHcCCCEEEEe
Confidence 9998863 555688888753211 0 00 011 1123334455667777888888999999999999
Q ss_pred cccCCCCEEEEEEcChhHHHHHHHHHHHHHhCCCH
Q 006117 173 KLRPLIDLRVSVTGGVHFDLVKRVFRDIQRVGQEP 207 (660)
Q Consensus 173 eLr~llDlkIfVdad~dirLiRRI~RDv~eRGrs~ 207 (660)
|+...+|. .....+..+.+++...|.+.
T Consensus 162 EPt~gLD~-------~~~~~l~~~l~~l~~~g~ti 189 (274)
T PRK13644 162 EVTSMLDP-------DSGIAVLERIKKLHEKGKTI 189 (274)
T ss_pred CCcccCCH-------HHHHHHHHHHHHHHhCCCEE
Confidence 99999997 33344455555554456554
No 197
>cd03300 ABC_PotA_N PotA is an ABC-type transporter and the ATPase component of the spermidine/putrescine-preferential uptake system consisting of PotA, -B, -C, and -D. PotA has two domains with the N-terminal domain containing the ATPase activity and the residues required for homodimerization with PotA and heterdimerization with PotB. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.32 E-value=2.9e-12 Score=129.91 Aligned_cols=156 Identities=22% Similarity=0.238 Sum_probs=111.9
Q ss_pred ceeeeecCceEEEEecceeeccCCcceEEEEECCCCCcHHHHHHHHHHhC-CCceEEEecCcccc-----cccccccCCC
Q 006117 41 DTLSFEKGFFIVIRACQLLAQKNHGIILVGVAGPSGAGKTVFTEKVLNFM-PSIAVITMDNYNDS-----SRIIDGNFDD 114 (660)
Q Consensus 41 ~~ls~~~g~~~vL~~Isl~i~~ge~~~IIGI~GpSGSGKSTLak~L~~lL-p~~g~I~lDg~~~~-----~~~i~~vfq~ 114 (660)
+.+++.++...++++++|.+++|+ ++||+|+||||||||+++|++.+ |..|.|.++|.... .+.+++++|+
T Consensus 4 ~~l~~~~~~~~il~~i~~~i~~Ge---~~~i~G~nGsGKSTLl~~l~g~~~~~~G~i~~~g~~~~~~~~~~~~i~~~~q~ 80 (232)
T cd03300 4 ENVSKFYGGFVALDGVSLDIKEGE---FFTLLGPSGCGKTTLLRLIAGFETPTSGEILLDGKDITNLPPHKRPVNTVFQN 80 (232)
T ss_pred EeEEEEeCCeeeeccceEEECCCC---EEEEECCCCCCHHHHHHHHhcCCCCCceEEEECCEEcCcCChhhcceEEEecc
Confidence 445566566789999999999999 99999999999999999999998 78999999987432 2457899999
Q ss_pred CCCCchhhHHHHHHhhhc--C---c----c-------ccc-ccccccccccccceeeecCCccEEEEecceeecccccCC
Q 006117 115 PRLTDYDTLLENIRGLKE--G---K----A-------VQV-PIYDFKSSSRIGYRTLEVPSSRIVIIEGIYALSEKLRPL 177 (660)
Q Consensus 115 p~l~d~~tl~e~L~~L~~--G---k----~-------I~~-PiyD~s~~~rs~~~~~~v~~a~VVIVEGilaL~deLr~l 177 (660)
+.+++..++.+++..... + . . +.. +..+......++++..++..++.++-.+.+++.||+...
T Consensus 81 ~~~~~~~t~~~nl~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~lS~G~~qrl~laral~~~p~llllDEP~~g 160 (232)
T cd03300 81 YALFPHLTVFENIAFGLRLKKLPKAEIKERVAEALDLVQLEGYANRKPSQLSGGQQQRVAIARALVNEPKVLLLDEPLGA 160 (232)
T ss_pred cccCCCCcHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCchhhcCChhhCCHHHHHHHHHHHHHhcCCCEEEEcCCccc
Confidence 998887788888753211 0 0 0 001 112222334455677777788888888999999999999
Q ss_pred CCEEEEEEcChhHHHHHHHHHHHHHh-CCC
Q 006117 178 IDLRVSVTGGVHFDLVKRVFRDIQRV-GQE 206 (660)
Q Consensus 178 lDlkIfVdad~dirLiRRI~RDv~eR-Grs 206 (660)
+|. ........+.++...+ |.+
T Consensus 161 LD~-------~~~~~l~~~l~~~~~~~~~t 183 (232)
T cd03300 161 LDL-------KLRKDMQLELKRLQKELGIT 183 (232)
T ss_pred CCH-------HHHHHHHHHHHHHHHHcCCE
Confidence 997 3344444455554432 444
No 198
>PRK14262 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.32 E-value=2.7e-12 Score=131.22 Aligned_cols=137 Identities=15% Similarity=0.167 Sum_probs=102.5
Q ss_pred cceeeeecCceEEEEecceeeccCCcceEEEEECCCCCcHHHHHHHHHHhCC------CceEEEecCcccc---------
Q 006117 40 EDTLSFEKGFFIVIRACQLLAQKNHGIILVGVAGPSGAGKTVFTEKVLNFMP------SIAVITMDNYNDS--------- 104 (660)
Q Consensus 40 ~~~ls~~~g~~~vL~~Isl~i~~ge~~~IIGI~GpSGSGKSTLak~L~~lLp------~~g~I~lDg~~~~--------- 104 (660)
.+++++.++...++++++|.+++|+ +++|+|+||||||||+++|+++++ ..|.|.++|....
T Consensus 6 ~~~l~~~~~~~~~l~~i~~~i~~Ge---~~~i~G~nGsGKSTLl~~i~Gl~~~~~~~~~~G~i~i~g~~~~~~~~~~~~~ 82 (250)
T PRK14262 6 IENFSAYYGEKKAVKNVTMKIFKNQ---ITAIIGPSGCGKTTLLRSINRMNDHIPGFRVEGKIYFKGQDIYDPQLDVTEY 82 (250)
T ss_pred EEeeEEEeCCceeEeeeeEeecCCC---EEEEECCCCCCHHHHHHHHhccccCCCCCCcceEEEECCEEcccchhhHHHh
Confidence 3455555566679999999999999 999999999999999999999873 6899999986432
Q ss_pred cccccccCCCCCCCchhhHHHHHHhhhc--Cc----ccc-----------c-----ccccccccccccceeeecCCccEE
Q 006117 105 SRIIDGNFDDPRLTDYDTLLENIRGLKE--GK----AVQ-----------V-----PIYDFKSSSRIGYRTLEVPSSRIV 162 (660)
Q Consensus 105 ~~~i~~vfq~p~l~d~~tl~e~L~~L~~--Gk----~I~-----------~-----PiyD~s~~~rs~~~~~~v~~a~VV 162 (660)
.+.++++||++.+++ .++.+++..... +. ... . ...+......++++..++..+..+
T Consensus 83 ~~~i~~~~q~~~~~~-~tv~e~l~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~LS~Gq~qr~~la~al 161 (250)
T PRK14262 83 RKKVGMVFQKPTPFP-MSIYDNVAFGPRIHGVKSKHKLDRIVEESLKKAALWDEVKSELNKPGTRLSGGQQQRLCIARAL 161 (250)
T ss_pred hhhEEEEecCCccCc-ccHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHcCCCchhHHHHhCChhhcCHHHHHHHHHHHHH
Confidence 235789999998887 788888864211 10 000 0 012223334556677778888889
Q ss_pred EEecceeecccccCCCCE
Q 006117 163 IIEGIYALSEKLRPLIDL 180 (660)
Q Consensus 163 IVEGilaL~deLr~llDl 180 (660)
+.++.+++.||+...+|.
T Consensus 162 ~~~p~llllDEP~~~LD~ 179 (250)
T PRK14262 162 AVEPEVILLDEPTSALDP 179 (250)
T ss_pred hCCCCEEEEeCCccccCH
Confidence 999999999999999997
No 199
>TIGR02769 nickel_nikE nickel import ATP-binding protein NikE. This family represents the NikE subunit of a multisubunit nickel import ABC transporter complex. Nickel, once imported, may be used in urease and in certain classes of hydrogenase and superoxide dismutase.
Probab=99.31 E-value=2.6e-12 Score=132.94 Aligned_cols=129 Identities=16% Similarity=0.181 Sum_probs=96.9
Q ss_pred ceEEEEecceeeccCCcceEEEEECCCCCcHHHHHHHHHHhC-CCceEEEecCcccc----------cccccccCCCCC-
Q 006117 49 FFIVIRACQLLAQKNHGIILVGVAGPSGAGKTVFTEKVLNFM-PSIAVITMDNYNDS----------SRIIDGNFDDPR- 116 (660)
Q Consensus 49 ~~~vL~~Isl~i~~ge~~~IIGI~GpSGSGKSTLak~L~~lL-p~~g~I~lDg~~~~----------~~~i~~vfq~p~- 116 (660)
...++++++|.+++|+ ++||+|+||||||||+++|++++ |..|.|.++|.... .+.+++++|++.
T Consensus 23 ~~~il~~isl~i~~Ge---~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~i~~~~~~~~~~~~~~i~~v~q~~~~ 99 (265)
T TIGR02769 23 RAPVLTNVSLSIEEGE---TVGLLGRSGCGKSTLARLLLGLEKPAQGTVSFRGQDLYQLDRKQRRAFRRDVQLVFQDSPS 99 (265)
T ss_pred ceEEeeCceeEEcCCC---EEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEEccccCHHHHHHHhhceEEEecChhh
Confidence 4679999999999999 99999999999999999999998 78999999986432 134788999873
Q ss_pred -CCchhhHHHHHHhhh---cC--c------------cccc--ccccccccccccceeeecCCccEEEEecceeecccccC
Q 006117 117 -LTDYDTLLENIRGLK---EG--K------------AVQV--PIYDFKSSSRIGYRTLEVPSSRIVIIEGIYALSEKLRP 176 (660)
Q Consensus 117 -l~d~~tl~e~L~~L~---~G--k------------~I~~--PiyD~s~~~rs~~~~~~v~~a~VVIVEGilaL~deLr~ 176 (660)
+++..++.+++.... .+ . .... ...+......++++.+++..++.++.++.+++.||+..
T Consensus 100 ~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~~LSgGe~qrv~laral~~~p~illLDEPt~ 179 (265)
T TIGR02769 100 AVNPRMTVRQIIGEPLRHLTSLDESEQKARIAELLDMVGLRSEDADKLPRQLSGGQLQRINIARALAVKPKLIVLDEAVS 179 (265)
T ss_pred hcCCCCCHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCChhhhhCChhhCCHHHHHHHHHHHHHhcCCCEEEEeCCcc
Confidence 455567777764211 00 0 0111 11223334455677778888889999999999999999
Q ss_pred CCCE
Q 006117 177 LIDL 180 (660)
Q Consensus 177 llDl 180 (660)
.+|.
T Consensus 180 ~LD~ 183 (265)
T TIGR02769 180 NLDM 183 (265)
T ss_pred cCCH
Confidence 9997
No 200
>COG4608 AppF ABC-type oligopeptide transport system, ATPase component [Amino acid transport and metabolism]
Probab=99.31 E-value=5e-12 Score=131.03 Aligned_cols=133 Identities=14% Similarity=0.216 Sum_probs=99.8
Q ss_pred ceeeeeccceeeeecC-----ceEEEEecceeeccCCcceEEEEECCCCCcHHHHHHHHHHhC-CCceEEEecCcccccc
Q 006117 33 RYEIVPIEDTLSFEKG-----FFIVIRACQLLAQKNHGIILVGVAGPSGAGKTVFTEKVLNFM-PSIAVITMDNYNDSSR 106 (660)
Q Consensus 33 ~~ei~~~~~~ls~~~g-----~~~vL~~Isl~i~~ge~~~IIGI~GpSGSGKSTLak~L~~lL-p~~g~I~lDg~~~~~~ 106 (660)
+.++..+.+.|....+ ...++++|||.+.+|+ ++||+|.|||||||++++|.++. |+.|.|.++|......
T Consensus 4 ll~v~~l~k~f~~~~~~~~~~~v~avd~Vsf~i~~ge---~~glVGESG~GKSTlgr~i~~L~~pt~G~i~f~g~~i~~~ 80 (268)
T COG4608 4 LLEVKNLKKYFPVGKGFGKKRYVKAVDGVSFSIKEGE---TLGLVGESGCGKSTLGRLILGLEEPTSGEILFEGKDITKL 80 (268)
T ss_pred eEEEeccEEEEecccccCcccceEEecceeEEEcCCC---EEEEEecCCCCHHHHHHHHHcCcCCCCceEEEcCcchhhc
Confidence 3445556666654433 4689999999999999 99999999999999999999999 8999999998754321
Q ss_pred cccccCCCCCCCchhhHHHHHHhhhcCcccccccccccccccccceeeecCCccEEEEecceeecccccCCCCE
Q 006117 107 IIDGNFDDPRLTDYDTLLENIRGLKEGKAVQVPIYDFKSSSRIGYRTLEVPSSRIVIIEGIYALSEKLRPLIDL 180 (660)
Q Consensus 107 ~i~~vfq~p~l~d~~tl~e~L~~L~~Gk~I~~PiyD~s~~~rs~~~~~~v~~a~VVIVEGilaL~deLr~llDl 180 (660)
. .....+.+..+...-......++...|+.++++.+++..++.+++++-++..||+...+|.
T Consensus 81 ~------------~~~~~~~v~elL~~Vgl~~~~~~ryPhelSGGQrQRi~IARALal~P~liV~DEpvSaLDv 142 (268)
T COG4608 81 S------------KEERRERVLELLEKVGLPEEFLYRYPHELSGGQRQRIGIARALALNPKLIVADEPVSALDV 142 (268)
T ss_pred c------------hhHHHHHHHHHHHHhCCCHHHhhcCCcccCchhhhhHHHHHHHhhCCcEEEecCchhhcch
Confidence 1 1112222222222111222356677788889999999999999999999999999999997
No 201
>PRK10982 galactose/methyl galaxtoside transporter ATP-binding protein; Provisional
Probab=99.31 E-value=2.3e-12 Score=144.47 Aligned_cols=156 Identities=10% Similarity=0.074 Sum_probs=115.6
Q ss_pred eeeeecCceEEEEecceeeccCCcceEEEEECCCCCcHHHHHHHHHHhC-CCceEEEecCcccc--------cccccccC
Q 006117 42 TLSFEKGFFIVIRACQLLAQKNHGIILVGVAGPSGAGKTVFTEKVLNFM-PSIAVITMDNYNDS--------SRIIDGNF 112 (660)
Q Consensus 42 ~ls~~~g~~~vL~~Isl~i~~ge~~~IIGI~GpSGSGKSTLak~L~~lL-p~~g~I~lDg~~~~--------~~~i~~vf 112 (660)
++++.++...++++++|.+++|+ ++||+|+||||||||+++|++++ |..|.|.++|.... .+.++++|
T Consensus 3 nl~~~~~~~~il~~vs~~i~~Ge---~~~liG~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~~i~~v~ 79 (491)
T PRK10982 3 NISKSFPGVKALDNVNLKVRPHS---IHALMGENGAGKSTLLKCLFGIYQKDSGSILFQGKEIDFKSSKEALENGISMVH 79 (491)
T ss_pred ceEEEeCCEEeeeeeeEEEcCCc---EEEEECCCCCCHHHHHHHHcCCCCCCceEEEECCEECCCCCHHHHHhCCEEEEe
Confidence 45555666789999999999999 99999999999999999999998 78999999996432 13478999
Q ss_pred CCCCCCchhhHHHHHHhhhc---Cc-----c-----------cccc-cccccccccccceeeecCCccEEEEecceeecc
Q 006117 113 DDPRLTDYDTLLENIRGLKE---GK-----A-----------VQVP-IYDFKSSSRIGYRTLEVPSSRIVIIEGIYALSE 172 (660)
Q Consensus 113 q~p~l~d~~tl~e~L~~L~~---Gk-----~-----------I~~P-iyD~s~~~rs~~~~~~v~~a~VVIVEGilaL~d 172 (660)
|++.+++..++.+++..... +. . .... ..+...+..++++.+++..+..++.++.+++.|
T Consensus 80 q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgGq~qrv~lA~al~~~p~lllLD 159 (491)
T PRK10982 80 QELNLVLQRSVMDNMWLGRYPTKGMFVDQDKMYRDTKAIFDELDIDIDPRAKVATLSVSQMQMIEIAKAFSYNAKIVIMD 159 (491)
T ss_pred cccccccCCCHHHHhhcccccccccccCHHHHHHHHHHHHHHcCCCCCccCchhhCCHHHHHHHHHHHHHHhCCCEEEEe
Confidence 99988888899988763210 10 0 0011 123334456677888888889999999999999
Q ss_pred cccCCCCEEEEEEcChhHHHHHHHHHHHHHhCCCH
Q 006117 173 KLRPLIDLRVSVTGGVHFDLVKRVFRDIQRVGQEP 207 (660)
Q Consensus 173 eLr~llDlkIfVdad~dirLiRRI~RDv~eRGrs~ 207 (660)
|+...+|. .....+..+.+++...|.+.
T Consensus 160 EPt~~LD~-------~~~~~l~~~l~~l~~~g~tv 187 (491)
T PRK10982 160 EPTSSLTE-------KEVNHLFTIIRKLKERGCGI 187 (491)
T ss_pred CCCCCCCH-------HHHHHHHHHHHHHHhCCCEE
Confidence 99999997 33444445555555455543
No 202
>PRK11288 araG L-arabinose transporter ATP-binding protein; Provisional
Probab=99.31 E-value=2.4e-12 Score=144.68 Aligned_cols=157 Identities=13% Similarity=0.075 Sum_probs=116.7
Q ss_pred ceeeeecCceEEEEecceeeccCCcceEEEEECCCCCcHHHHHHHHHHhC-CCceEEEecCcccc--------ccccccc
Q 006117 41 DTLSFEKGFFIVIRACQLLAQKNHGIILVGVAGPSGAGKTVFTEKVLNFM-PSIAVITMDNYNDS--------SRIIDGN 111 (660)
Q Consensus 41 ~~ls~~~g~~~vL~~Isl~i~~ge~~~IIGI~GpSGSGKSTLak~L~~lL-p~~g~I~lDg~~~~--------~~~i~~v 111 (660)
+++++.++...++++++|.+++|+ ++||+|+||||||||+++|++++ |..|.|.++|.... .+.++++
T Consensus 8 ~~l~~~~~~~~il~~isl~i~~Ge---~~~l~G~nGsGKSTLl~~l~Gl~~p~~G~I~~~g~~i~~~~~~~~~~~~i~~v 84 (501)
T PRK11288 8 DGIGKTFPGVKALDDISFDCRAGQ---VHALMGENGAGKSTLLKILSGNYQPDAGSILIDGQEMRFASTTAALAAGVAII 84 (501)
T ss_pred eeeEEEECCEEEEeeeeEEEeCCc---EEEEECCCCCCHHHHHHHHhCCCCCCCCEEEECCEECCCCCHHHHHhCCEEEE
Confidence 455555566779999999999999 99999999999999999999998 78999999986432 1357899
Q ss_pred CCCCCCCchhhHHHHHHhhhc----C----cc-----------ccc-ccccccccccccceeeecCCccEEEEecceeec
Q 006117 112 FDDPRLTDYDTLLENIRGLKE----G----KA-----------VQV-PIYDFKSSSRIGYRTLEVPSSRIVIIEGIYALS 171 (660)
Q Consensus 112 fq~p~l~d~~tl~e~L~~L~~----G----k~-----------I~~-PiyD~s~~~rs~~~~~~v~~a~VVIVEGilaL~ 171 (660)
+|++.+++..++.+++..... + .. +.. +..+...+..++++.+++..++.++.++.+++.
T Consensus 85 ~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgGq~qrv~laral~~~p~lllL 164 (501)
T PRK11288 85 YQELHLVPEMTVAENLYLGQLPHKGGIVNRRLLNYEAREQLEHLGVDIDPDTPLKYLSIGQRQMVEIAKALARNARVIAF 164 (501)
T ss_pred EechhccCCCCHHHHHHhcccccccCCCCHHHHHHHHHHHHHHcCCCCCcCCchhhCCHHHHHHHHHHHHHHhCCCEEEE
Confidence 999988888889888864210 1 00 011 112333455667788888899999999999999
Q ss_pred ccccCCCCEEEEEEcChhHHHHHHHHHHHHHhCCCH
Q 006117 172 EKLRPLIDLRVSVTGGVHFDLVKRVFRDIQRVGQEP 207 (660)
Q Consensus 172 deLr~llDlkIfVdad~dirLiRRI~RDv~eRGrs~ 207 (660)
||+...+|. .....+..+.+++.+.|.+.
T Consensus 165 DEPt~~LD~-------~~~~~l~~~l~~~~~~g~ti 193 (501)
T PRK11288 165 DEPTSSLSA-------REIEQLFRVIRELRAEGRVI 193 (501)
T ss_pred cCCCCCCCH-------HHHHHHHHHHHHHHhCCCEE
Confidence 999999997 33444455555554445543
No 203
>PRK14248 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.31 E-value=3.7e-12 Score=131.92 Aligned_cols=137 Identities=20% Similarity=0.218 Sum_probs=102.9
Q ss_pred cceeeeecCceEEEEecceeeccCCcceEEEEECCCCCcHHHHHHHHHHhC------CCceEEEecCcccc---------
Q 006117 40 EDTLSFEKGFFIVIRACQLLAQKNHGIILVGVAGPSGAGKTVFTEKVLNFM------PSIAVITMDNYNDS--------- 104 (660)
Q Consensus 40 ~~~ls~~~g~~~vL~~Isl~i~~ge~~~IIGI~GpSGSGKSTLak~L~~lL------p~~g~I~lDg~~~~--------- 104 (660)
.+++++.++...++++++|.+.+|+ ++||+|+||||||||+++|++++ |+.|.|.++|....
T Consensus 24 ~~~l~~~~~~~~il~~vsl~i~~Ge---~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~i~~~g~~i~~~~~~~~~~ 100 (268)
T PRK14248 24 VKDLSIYYGEKRAVNDISMDIEKHA---VTALIGPSGCGKSTFLRSINRMNDLIPSARSEGEILYEGLNILDSNINVVNL 100 (268)
T ss_pred EEEEEEEeCCceeeeceEEEEcCCC---EEEEECCCCCCHHHHHHHHHhcccccCCCCCceEEEECCEEcccccccHHHH
Confidence 4555666666789999999999999 99999999999999999999974 37899999986432
Q ss_pred cccccccCCCCCCCchhhHHHHHHhhhc--C---cc-----cc-------c-----ccccccccccccceeeecCCccEE
Q 006117 105 SRIIDGNFDDPRLTDYDTLLENIRGLKE--G---KA-----VQ-------V-----PIYDFKSSSRIGYRTLEVPSSRIV 162 (660)
Q Consensus 105 ~~~i~~vfq~p~l~d~~tl~e~L~~L~~--G---k~-----I~-------~-----PiyD~s~~~rs~~~~~~v~~a~VV 162 (660)
.+.+++++|++.+++. ++.+++..... + .. +. . ...+...+..++++.+++..++.+
T Consensus 101 ~~~i~~v~q~~~~~~~-tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~LSgGq~qrl~laral 179 (268)
T PRK14248 101 RREIGMVFQKPNPFPK-SIYNNITHALKYAGERRKSVLDEIVEESLTKAALWDEVKDRLHSSALSLSGGQQQRLCIARTL 179 (268)
T ss_pred hccEEEEecCCccCcc-cHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHcCCCcchHHHHhcCcccCCHHHHHHHHHHHHH
Confidence 1357899999988874 88888753211 1 00 00 0 012233344566777788888889
Q ss_pred EEecceeecccccCCCCE
Q 006117 163 IIEGIYALSEKLRPLIDL 180 (660)
Q Consensus 163 IVEGilaL~deLr~llDl 180 (660)
+.++.+++.||+...+|.
T Consensus 180 ~~~p~lllLDEPt~~LD~ 197 (268)
T PRK14248 180 AMKPAVLLLDEPASALDP 197 (268)
T ss_pred hCCCCEEEEcCCCcccCH
Confidence 999999999999999997
No 204
>TIGR00968 3a0106s01 sulfate ABC transporter, ATP-binding protein.
Probab=99.31 E-value=3.2e-12 Score=130.16 Aligned_cols=137 Identities=23% Similarity=0.229 Sum_probs=103.1
Q ss_pred ceeeeecCceEEEEecceeeccCCcceEEEEECCCCCcHHHHHHHHHHhC-CCceEEEecCcccc-----cccccccCCC
Q 006117 41 DTLSFEKGFFIVIRACQLLAQKNHGIILVGVAGPSGAGKTVFTEKVLNFM-PSIAVITMDNYNDS-----SRIIDGNFDD 114 (660)
Q Consensus 41 ~~ls~~~g~~~vL~~Isl~i~~ge~~~IIGI~GpSGSGKSTLak~L~~lL-p~~g~I~lDg~~~~-----~~~i~~vfq~ 114 (660)
+++++.++...++++++|.+.+|+ ++||+|+||||||||++.|++.+ |..|.|.++|.+.. .+.+++++|+
T Consensus 4 ~~l~~~~~~~~il~~is~~i~~Ge---~~~l~G~nGsGKSTLl~~i~G~~~~~~G~i~i~g~~~~~~~~~~~~i~~~~q~ 80 (237)
T TIGR00968 4 ANISKRFGSFQALDDVNLEVPTGS---LVALLGPSGSGKSTLLRIIAGLEQPDSGRIRLNGQDATRVHARDRKIGFVFQH 80 (237)
T ss_pred EEEEEEECCeeeeeeEEEEEcCCC---EEEEECCCCCCHHHHHHHHhcCCCCCceEEEECCEEcCcCChhhcCEEEEecC
Confidence 445555566789999999999999 99999999999999999999998 78999999987532 2357899999
Q ss_pred CCCCchhhHHHHHHhhhc--Cc-------c-------ccc-ccccccccccccceeeecCCccEEEEecceeecccccCC
Q 006117 115 PRLTDYDTLLENIRGLKE--GK-------A-------VQV-PIYDFKSSSRIGYRTLEVPSSRIVIIEGIYALSEKLRPL 177 (660)
Q Consensus 115 p~l~d~~tl~e~L~~L~~--Gk-------~-------I~~-PiyD~s~~~rs~~~~~~v~~a~VVIVEGilaL~deLr~l 177 (660)
+.+|+..++.+++..... +. . ... +..+......++++..++..++.++-.+.+++.||+...
T Consensus 81 ~~~~~~~t~~enl~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~lS~G~~qrl~laral~~~p~llllDEP~~~ 160 (237)
T TIGR00968 81 YALFKHLTVRDNIAFGLEIRKHPKAKIKARVEELLELVQLEGLGDRYPNQLSGGQRQRVALARALAVEPQVLLLDEPFGA 160 (237)
T ss_pred hhhccCCcHHHHHHhHHHhcCCCHHHHHHHHHHHHHHcCCHhHhhCChhhCCHHHHHHHHHHHHHhcCCCEEEEcCCccc
Confidence 998888888888853221 10 0 000 112222234455666777777788888888888999999
Q ss_pred CCE
Q 006117 178 IDL 180 (660)
Q Consensus 178 lDl 180 (660)
+|.
T Consensus 161 LD~ 163 (237)
T TIGR00968 161 LDA 163 (237)
T ss_pred CCH
Confidence 997
No 205
>PRK11701 phnK phosphonate C-P lyase system protein PhnK; Provisional
Probab=99.31 E-value=3.2e-12 Score=131.56 Aligned_cols=139 Identities=15% Similarity=0.084 Sum_probs=99.9
Q ss_pred ccceeeeecCceEEEEecceeeccCCcceEEEEECCCCCcHHHHHHHHHHhC-CCceEEEecCcc-----cc--------
Q 006117 39 IEDTLSFEKGFFIVIRACQLLAQKNHGIILVGVAGPSGAGKTVFTEKVLNFM-PSIAVITMDNYN-----DS-------- 104 (660)
Q Consensus 39 ~~~~ls~~~g~~~vL~~Isl~i~~ge~~~IIGI~GpSGSGKSTLak~L~~lL-p~~g~I~lDg~~-----~~-------- 104 (660)
..+++++.++...++++++|.+++|+ ++||+|+||||||||+++|++++ |..|.|.++|.. ..
T Consensus 8 ~~~~l~~~~~~~~il~~is~~i~~Ge---~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~i~~~~~~~~~ 84 (258)
T PRK11701 8 SVRGLTKLYGPRKGCRDVSFDLYPGE---VLGIVGESGSGKTTLLNALSARLAPDAGEVHYRMRDGQLRDLYALSEAERR 84 (258)
T ss_pred EEeeeEEEcCCceeeeeeeEEEeCCC---EEEEECCCCCCHHHHHHHHhCCCCCCCCEEEECCccccccccccCCHHHHH
Confidence 34555565555679999999999999 99999999999999999999998 789999999865 21
Q ss_pred ---cccccccCCCCC--CCchhhHHHHHHh----hh---------------cCcccccccccccccccccceeeecCCcc
Q 006117 105 ---SRIIDGNFDDPR--LTDYDTLLENIRG----LK---------------EGKAVQVPIYDFKSSSRIGYRTLEVPSSR 160 (660)
Q Consensus 105 ---~~~i~~vfq~p~--l~d~~tl~e~L~~----L~---------------~Gk~I~~PiyD~s~~~rs~~~~~~v~~a~ 160 (660)
.+.+++++|++. ++...++.+++.. .. ..-.+.....+......++++.+++..++
T Consensus 85 ~~~~~~i~~v~q~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LS~Gq~qrl~lar 164 (258)
T PRK11701 85 RLLRTEWGFVHQHPRDGLRMQVSAGGNIGERLMAVGARHYGDIRATAGDWLERVEIDAARIDDLPTTFSGGMQQRLQIAR 164 (258)
T ss_pred HHhhcceEEEeeCcccccCccccHHHHHHHHHHHhccCcHHHHHHHHHHHHHHcCCChhHHhCCCccCCHHHHHHHHHHH
Confidence 124788999874 3333344444321 00 00001101223344556667788888889
Q ss_pred EEEEecceeecccccCCCCE
Q 006117 161 IVIIEGIYALSEKLRPLIDL 180 (660)
Q Consensus 161 VVIVEGilaL~deLr~llDl 180 (660)
.++.++.+++.||+...+|.
T Consensus 165 al~~~p~llllDEPt~~LD~ 184 (258)
T PRK11701 165 NLVTHPRLVFMDEPTGGLDV 184 (258)
T ss_pred HHhcCCCEEEEcCCcccCCH
Confidence 99999999999999999996
No 206
>PRK13648 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=99.31 E-value=2.2e-12 Score=133.76 Aligned_cols=151 Identities=13% Similarity=0.176 Sum_probs=106.3
Q ss_pred ceeeeecCc--eEEEEecceeeccCCcceEEEEECCCCCcHHHHHHHHHHhC-CCceEEEecCccccc-------ccccc
Q 006117 41 DTLSFEKGF--FIVIRACQLLAQKNHGIILVGVAGPSGAGKTVFTEKVLNFM-PSIAVITMDNYNDSS-------RIIDG 110 (660)
Q Consensus 41 ~~ls~~~g~--~~vL~~Isl~i~~ge~~~IIGI~GpSGSGKSTLak~L~~lL-p~~g~I~lDg~~~~~-------~~i~~ 110 (660)
+++++.++. ..++++++|.+++|+ ++||+||||||||||+++|++++ |..|.|.++|..... +.+++
T Consensus 11 ~~l~~~~~~~~~~~l~~isl~i~~Ge---~~~I~G~nGsGKSTLl~~i~Gl~~~~~G~i~~~g~~~~~~~~~~~~~~i~~ 87 (269)
T PRK13648 11 KNVSFQYQSDASFTLKDVSFNIPKGQ---WTSIVGHNGSGKSTIAKLMIGIEKVKSGEIFYNNQAITDDNFEKLRKHIGI 87 (269)
T ss_pred EEEEEEcCCCCCcceeeeEEEEcCCC---EEEEECCCCCCHHHHHHHHhcCCCCCceEEEECCEECCcCCHHHHHhheeE
Confidence 444444432 358999999999999 99999999999999999999998 789999999975421 34788
Q ss_pred cCCCCC-CCchhhHHHHHHhhhc--C--------------ccccc-ccccccccccccceeeecCCccEEEEecceeecc
Q 006117 111 NFDDPR-LTDYDTLLENIRGLKE--G--------------KAVQV-PIYDFKSSSRIGYRTLEVPSSRIVIIEGIYALSE 172 (660)
Q Consensus 111 vfq~p~-l~d~~tl~e~L~~L~~--G--------------k~I~~-PiyD~s~~~rs~~~~~~v~~a~VVIVEGilaL~d 172 (660)
++|++. .++..++.+++..... + +.+.. +..+......++++..++..++.++.++.+++.|
T Consensus 88 v~q~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrl~laral~~~p~lllLD 167 (269)
T PRK13648 88 VFQNPDNQFVGSIVKYDVAFGLENHAVPYDEMHRRVSEALKQVDMLERADYEPNALSGGQKQRVAIAGVLALNPSVIILD 167 (269)
T ss_pred EEeChHHhcccccHHHHHHhhHHhcCCCHHHHHHHHHHHHHHcCCchhhhCCcccCCHHHHHHHHHHHHHHcCCCEEEEe
Confidence 999875 4555566655532110 0 00111 2233334455667777888888999999999999
Q ss_pred cccCCCCEEEEEEcChhHHHHHHHHHHHH
Q 006117 173 KLRPLIDLRVSVTGGVHFDLVKRVFRDIQ 201 (660)
Q Consensus 173 eLr~llDlkIfVdad~dirLiRRI~RDv~ 201 (660)
|+...+|. ...+.+.++.+++.
T Consensus 168 EPt~~LD~-------~~~~~l~~~L~~~~ 189 (269)
T PRK13648 168 EATSMLDP-------DARQNLLDLVRKVK 189 (269)
T ss_pred CCcccCCH-------HHHHHHHHHHHHHH
Confidence 99999997 33444444455443
No 207
>PRK13541 cytochrome c biogenesis protein CcmA; Provisional
Probab=99.31 E-value=4.1e-12 Score=125.50 Aligned_cols=136 Identities=17% Similarity=0.131 Sum_probs=98.6
Q ss_pred ceeeeecCceEEEEecceeeccCCcceEEEEECCCCCcHHHHHHHHHHhC-CCceEEEecCccccc---ccccccCCCCC
Q 006117 41 DTLSFEKGFFIVIRACQLLAQKNHGIILVGVAGPSGAGKTVFTEKVLNFM-PSIAVITMDNYNDSS---RIIDGNFDDPR 116 (660)
Q Consensus 41 ~~ls~~~g~~~vL~~Isl~i~~ge~~~IIGI~GpSGSGKSTLak~L~~lL-p~~g~I~lDg~~~~~---~~i~~vfq~p~ 116 (660)
+++++.++...+++ ++|.+++|+ ++||+|+||||||||+++|++.+ |..|.|.++|..... +.++++++++.
T Consensus 5 ~~l~~~~~~~~l~~-vs~~i~~Ge---~~~l~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~i~~~~~~~~~~~~~~~~ 80 (195)
T PRK13541 5 HQLQFNIEQKNLFD-LSITFLPSA---ITYIKGANGCGKSSLLRMIAGIMQPSSGNIYYKNCNINNIAKPYCTYIGHNLG 80 (195)
T ss_pred EEeeEEECCcEEEE-EEEEEcCCc---EEEEECCCCCCHHHHHHHHhcCCCCCCcEEEECCcccChhhhhhEEeccCCcC
Confidence 33444444445565 999999999 99999999999999999999998 799999999975322 34677888877
Q ss_pred CCchhhHHHHHHhhhc--Cc--c-------ccc-ccccccccccccceeeecCCccEEEEecceeecccccCCCCE
Q 006117 117 LTDYDTLLENIRGLKE--GK--A-------VQV-PIYDFKSSSRIGYRTLEVPSSRIVIIEGIYALSEKLRPLIDL 180 (660)
Q Consensus 117 l~d~~tl~e~L~~L~~--Gk--~-------I~~-PiyD~s~~~rs~~~~~~v~~a~VVIVEGilaL~deLr~llDl 180 (660)
+++..++.+++..... +. . ... +..+......++++.+++..+..++.++.+++.||+...+|.
T Consensus 81 ~~~~~tv~~~l~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~~rl~la~al~~~p~~lllDEP~~~LD~ 156 (195)
T PRK13541 81 LKLEMTVFENLKFWSEIYNSAETLYAAIHYFKLHDLLDEKCYSLSSGMQKIVAIARLIACQSDLWLLDEVETNLSK 156 (195)
T ss_pred CCccCCHHHHHHHHHHhcccHHHHHHHHHHcCCHhhhccChhhCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCH
Confidence 7777788888754221 10 0 001 112223334556677778888888889999999999999997
No 208
>PRK13640 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=99.31 E-value=1.7e-12 Score=135.86 Aligned_cols=138 Identities=15% Similarity=0.174 Sum_probs=102.2
Q ss_pred cceeeeecC--ceEEEEecceeeccCCcceEEEEECCCCCcHHHHHHHHHHhC-CCc---eEEEecCccccc-------c
Q 006117 40 EDTLSFEKG--FFIVIRACQLLAQKNHGIILVGVAGPSGAGKTVFTEKVLNFM-PSI---AVITMDNYNDSS-------R 106 (660)
Q Consensus 40 ~~~ls~~~g--~~~vL~~Isl~i~~ge~~~IIGI~GpSGSGKSTLak~L~~lL-p~~---g~I~lDg~~~~~-------~ 106 (660)
.+++++.++ ...++++++|.+++|+ ++||+|+||||||||+++|++++ |.. |.|.++|..... .
T Consensus 8 i~~l~~~~~~~~~~~l~~v~l~i~~Ge---~~~I~G~nGaGKSTLl~~l~G~~~p~~g~~G~i~i~g~~~~~~~~~~~~~ 84 (282)
T PRK13640 8 FKHVSFTYPDSKKPALNDISFSIPRGS---WTALIGHNGSGKSTISKLINGLLLPDDNPNSKITVDGITLTAKTVWDIRE 84 (282)
T ss_pred EEEEEEEcCCCCccceeeEEEEEcCCC---EEEEECCCCCcHHHHHHHHhcccCCCCCCCcEEEECCEECCcCCHHHHHh
Confidence 445555553 2469999999999999 99999999999999999999998 655 899999975421 3
Q ss_pred cccccCCCCC-CCchhhHHHHHHhhhc--Cc---c-----------ccc-ccccccccccccceeeecCCccEEEEecce
Q 006117 107 IIDGNFDDPR-LTDYDTLLENIRGLKE--GK---A-----------VQV-PIYDFKSSSRIGYRTLEVPSSRIVIIEGIY 168 (660)
Q Consensus 107 ~i~~vfq~p~-l~d~~tl~e~L~~L~~--Gk---~-----------I~~-PiyD~s~~~rs~~~~~~v~~a~VVIVEGil 168 (660)
.++++||++. .++..++.+++..... +. . +.. +..+......++++.+++..+..++.++.+
T Consensus 85 ~ig~v~q~~~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~l~~~~L~~~~~~~~~~LS~G~~qrv~laral~~~P~l 164 (282)
T PRK13640 85 KVGIVFQNPDNQFVGATVGDDVAFGLENRAVPRPEMIKIVRDVLADVGMLDYIDSEPANLSGGQKQRVAIAGILAVEPKI 164 (282)
T ss_pred heEEEEECHHHhhccCCHHHHHHhhHHhCCCCHHHHHHHHHHHHHHCCChhHhcCCcccCCHHHHHHHHHHHHHHcCCCE
Confidence 4789999985 5666788888863211 10 0 000 112333344556677778888889999999
Q ss_pred eecccccCCCCE
Q 006117 169 ALSEKLRPLIDL 180 (660)
Q Consensus 169 aL~deLr~llDl 180 (660)
++.||+...+|.
T Consensus 165 lllDEPt~gLD~ 176 (282)
T PRK13640 165 IILDESTSMLDP 176 (282)
T ss_pred EEEECCcccCCH
Confidence 999999999997
No 209
>PRK13638 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=99.30 E-value=1.9e-12 Score=134.37 Aligned_cols=137 Identities=15% Similarity=0.167 Sum_probs=99.8
Q ss_pred ceeeeecCceEEEEecceeeccCCcceEEEEECCCCCcHHHHHHHHHHhC-CCceEEEecCcccc---------cccccc
Q 006117 41 DTLSFEKGFFIVIRACQLLAQKNHGIILVGVAGPSGAGKTVFTEKVLNFM-PSIAVITMDNYNDS---------SRIIDG 110 (660)
Q Consensus 41 ~~ls~~~g~~~vL~~Isl~i~~ge~~~IIGI~GpSGSGKSTLak~L~~lL-p~~g~I~lDg~~~~---------~~~i~~ 110 (660)
+++++.++...++++++|.+++|+ ++||+|+||||||||+++|++++ |..|.|.++|.... .+.+++
T Consensus 5 ~~l~~~~~~~~il~~isl~i~~Ge---~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~i~~~~~~~~~~~~~i~~ 81 (271)
T PRK13638 5 SDLWFRYQDEPVLKGLNLDFSLSP---VTGLVGANGCGKSTLFMNLSGLLRPQKGAVLWQGKPLDYSKRGLLALRQQVAT 81 (271)
T ss_pred EEEEEEcCCcccccceEEEEcCCC---EEEEECCCCCCHHHHHHHHcCCCCCCccEEEECCEEcccccCCHHHHHhheEE
Confidence 445555566679999999999999 99999999999999999999998 78999999997531 134788
Q ss_pred cCCCCCC-CchhhHHHHHHhhh--cCc---c-----------cccc-cccccccccccceeeecCCccEEEEecceeecc
Q 006117 111 NFDDPRL-TDYDTLLENIRGLK--EGK---A-----------VQVP-IYDFKSSSRIGYRTLEVPSSRIVIIEGIYALSE 172 (660)
Q Consensus 111 vfq~p~l-~d~~tl~e~L~~L~--~Gk---~-----------I~~P-iyD~s~~~rs~~~~~~v~~a~VVIVEGilaL~d 172 (660)
+||++.. +...++.+++.... .+. . +... ..+......++++.+++..+..++.++.+++.|
T Consensus 82 v~q~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgG~~qrl~laraL~~~p~lllLD 161 (271)
T PRK13638 82 VFQDPEQQIFYTDIDSDIAFSLRNLGVPEAEITRRVDEALTLVDAQHFRHQPIQCLSHGQKKRVAIAGALVLQARYLLLD 161 (271)
T ss_pred EeeChhhccccccHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCHhHhcCCchhCCHHHHHHHHHHHHHHcCCCEEEEe
Confidence 9998753 23345666654311 010 0 0011 112223445667778888888999999999999
Q ss_pred cccCCCCE
Q 006117 173 KLRPLIDL 180 (660)
Q Consensus 173 eLr~llDl 180 (660)
|+...+|.
T Consensus 162 EPt~~LD~ 169 (271)
T PRK13638 162 EPTAGLDP 169 (271)
T ss_pred CCcccCCH
Confidence 99999997
No 210
>cd03223 ABCD_peroxisomal_ALDP Peroxisomal ATP-binding cassette transporter (Pat) is involved in the import of very long-chain fatty acids (VLCFA) into the peroxisome. The peroxisomal membrane forms a permeability barrier for a wide variety of metabolites required for and formed during fatty acid beta-oxidation. To communicate with the cytoplasm and mitochondria, peroxisomes need dedicated proteins to transport such hydrophilic molecules across their membranes. X-linked adrenoleukodystrophy (X-ALD) is caused by mutations in the ALD gene, which encodes ALDP (adrenoleukodystrophy protein ), a peroxisomal integral membrane protein that is a member of the ATP-binding cassette (ABC) transporter protein family. The disease is characterized by a striking and unpredictable variation in phenotypic expression. Phenotypes include the rapidly progressive childhood cerebral form (CCALD), the milder adult form, adrenomyeloneuropathy (AMN), and variants without neurologic involvement (i.e. asympt
Probab=99.30 E-value=3.3e-12 Score=123.55 Aligned_cols=118 Identities=15% Similarity=0.138 Sum_probs=95.4
Q ss_pred eeeeecC-ceEEEEecceeeccCCcceEEEEECCCCCcHHHHHHHHHHhC-CCceEEEecCcccccccccccCCCCCCCc
Q 006117 42 TLSFEKG-FFIVIRACQLLAQKNHGIILVGVAGPSGAGKTVFTEKVLNFM-PSIAVITMDNYNDSSRIIDGNFDDPRLTD 119 (660)
Q Consensus 42 ~ls~~~g-~~~vL~~Isl~i~~ge~~~IIGI~GpSGSGKSTLak~L~~lL-p~~g~I~lDg~~~~~~~i~~vfq~p~l~d 119 (660)
++++.++ ...++++++|.+++|+ +++|+|+||||||||+++|++.+ |..|.|.+++. +.+++++|++.++
T Consensus 5 ~~~~~~~~~~~~l~~i~l~i~~Ge---~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~~~----~~i~~~~q~~~~~- 76 (166)
T cd03223 5 NLSLATPDGRVLLKDLSFEIKPGD---RLLITGPSGTGKSSLFRALAGLWPWGSGRIGMPEG----EDLLFLPQRPYLP- 76 (166)
T ss_pred EEEEEcCCCCeeeecCeEEECCCC---EEEEECCCCCCHHHHHHHHhcCCCCCCceEEECCC----ceEEEECCCCccc-
Confidence 3444442 3468999999999999 99999999999999999999998 78999998864 4578899998765
Q ss_pred hhhHHHHHHhhhcCcccccccccccccccccceeeecCCccEEEEecceeecccccCCCCE
Q 006117 120 YDTLLENIRGLKEGKAVQVPIYDFKSSSRIGYRTLEVPSSRIVIIEGIYALSEKLRPLIDL 180 (660)
Q Consensus 120 ~~tl~e~L~~L~~Gk~I~~PiyD~s~~~rs~~~~~~v~~a~VVIVEGilaL~deLr~llDl 180 (660)
..++.+++... .....++++.+++..++.++.++.+++.||+...+|.
T Consensus 77 ~~tv~~nl~~~-------------~~~~LS~G~~~rv~laral~~~p~~lllDEPt~~LD~ 124 (166)
T cd03223 77 LGTLREQLIYP-------------WDDVLSGGEQQRLAFARLLLHKPKFVFLDEATSALDE 124 (166)
T ss_pred cccHHHHhhcc-------------CCCCCCHHHHHHHHHHHHHHcCCCEEEEECCccccCH
Confidence 46888887642 1234555667778888888999999999999999997
No 211
>PRK10261 glutathione transporter ATP-binding protein; Provisional
Probab=99.30 E-value=3e-12 Score=147.93 Aligned_cols=147 Identities=17% Similarity=0.172 Sum_probs=111.1
Q ss_pred eEEEEecceeeccCCcceEEEEECCCCCcHHHHHHHHHHhC-CCceEEEecCcccc----------cccccccCCCC--C
Q 006117 50 FIVIRACQLLAQKNHGIILVGVAGPSGAGKTVFTEKVLNFM-PSIAVITMDNYNDS----------SRIIDGNFDDP--R 116 (660)
Q Consensus 50 ~~vL~~Isl~i~~ge~~~IIGI~GpSGSGKSTLak~L~~lL-p~~g~I~lDg~~~~----------~~~i~~vfq~p--~ 116 (660)
..+++++||.+++|+ ++||+|+||||||||+++|++++ |..|.|.++|.... .+.++++||++ .
T Consensus 337 ~~~l~~vs~~i~~Ge---~~~lvG~nGsGKSTLlk~i~Gl~~p~~G~I~~~g~~i~~~~~~~~~~~~~~i~~v~Q~~~~~ 413 (623)
T PRK10261 337 VHAVEKVSFDLWPGE---TLSLVGESGSGKSTTGRALLRLVESQGGEIIFNGQRIDTLSPGKLQALRRDIQFIFQDPYAS 413 (623)
T ss_pred eEEEeeeEeEEcCCC---EEEEECCCCCCHHHHHHHHHcCCCCCCcEEEECCEECCcCCHHHHHHhcCCeEEEecCchhh
Confidence 579999999999999 99999999999999999999998 78999999986431 13578999998 4
Q ss_pred CCchhhHHHHHHhhh--cC----c-----------ccccc--cccccccccccceeeecCCccEEEEecceeecccccCC
Q 006117 117 LTDYDTLLENIRGLK--EG----K-----------AVQVP--IYDFKSSSRIGYRTLEVPSSRIVIIEGIYALSEKLRPL 177 (660)
Q Consensus 117 l~d~~tl~e~L~~L~--~G----k-----------~I~~P--iyD~s~~~rs~~~~~~v~~a~VVIVEGilaL~deLr~l 177 (660)
+++..++.+++.... .+ . .+..+ ..+...+..++++.+++..++.++.++.+++.||+...
T Consensus 414 l~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~~L~~~gL~~~~~~~~~~~LSgGqrQRv~iAraL~~~p~llllDEPts~ 493 (623)
T PRK10261 414 LDPRQTVGDSIMEPLRVHGLLPGKAAAARVAWLLERVGLLPEHAWRYPHEFSGGQRQRICIARALALNPKVIIADEAVSA 493 (623)
T ss_pred cCCCCCHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHcCCCHHHhhCCcccCCHHHHHHHHHHHHHhcCCCEEEEeCCccc
Confidence 777788888875411 01 0 11221 23445567778888899999999999999999999999
Q ss_pred CCEEEEEEcChhHHHHHHHHHHHHH-hCCC
Q 006117 178 IDLRVSVTGGVHFDLVKRVFRDIQR-VGQE 206 (660)
Q Consensus 178 lDlkIfVdad~dirLiRRI~RDv~e-RGrs 206 (660)
+|. .....+..+.+++.+ .|.+
T Consensus 494 LD~-------~~~~~i~~ll~~l~~~~g~t 516 (623)
T PRK10261 494 LDV-------SIRGQIINLLLDLQRDFGIA 516 (623)
T ss_pred CCH-------HHHHHHHHHHHHHHHhcCCE
Confidence 997 333444455555443 2544
No 212
>PRK14261 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.30 E-value=5.1e-12 Score=129.61 Aligned_cols=137 Identities=19% Similarity=0.178 Sum_probs=102.3
Q ss_pred cceeeeecCceEEEEecceeeccCCcceEEEEECCCCCcHHHHHHHHHHhC---C---CceEEEecCcccc---------
Q 006117 40 EDTLSFEKGFFIVIRACQLLAQKNHGIILVGVAGPSGAGKTVFTEKVLNFM---P---SIAVITMDNYNDS--------- 104 (660)
Q Consensus 40 ~~~ls~~~g~~~vL~~Isl~i~~ge~~~IIGI~GpSGSGKSTLak~L~~lL---p---~~g~I~lDg~~~~--------- 104 (660)
.+++++.++...++++++|.+++|+ ++||+|+||||||||+++|++++ | ..|.|.++|....
T Consensus 9 ~~~l~~~~~~~~~l~~vs~~i~~Ge---~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~i~~~g~~~~~~~~~~~~~ 85 (253)
T PRK14261 9 TKNLNLWYGEKHALYDITISIPKNR---VTALIGPSGCGKSTLLRCFNRMNDLIPGCRITGDILYNGENIMDSGADVVAL 85 (253)
T ss_pred EeeeEEEECCeeeeeeeEEEECCCc---EEEEECCCCCCHHHHHHHHhccccCCCCCCcceEEEECCEEccccccchhhh
Confidence 3556666666789999999999999 99999999999999999999986 2 3799999987532
Q ss_pred cccccccCCCCCCCchhhHHHHHHhhhc--C----cccc-----------c-----ccccccccccccceeeecCCccEE
Q 006117 105 SRIIDGNFDDPRLTDYDTLLENIRGLKE--G----KAVQ-----------V-----PIYDFKSSSRIGYRTLEVPSSRIV 162 (660)
Q Consensus 105 ~~~i~~vfq~p~l~d~~tl~e~L~~L~~--G----k~I~-----------~-----PiyD~s~~~rs~~~~~~v~~a~VV 162 (660)
.+.+++++|++.+++. ++.+++..... + .... . ...+......++++..++..++.+
T Consensus 86 ~~~i~~~~q~~~~~~~-tv~eni~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~l~~~~~~~~~~LS~G~~qrv~laral 164 (253)
T PRK14261 86 RRKIGMVFQRPNPFPK-SIYENVAYGPRIHGEKNKKTLDTIVEKSLKGAALWDEVKDRLHDSALSLSGGQQQRLCIARTL 164 (253)
T ss_pred hceEEEEecCCccCcc-cHHHHHHhhHHhcCCCCHHHHHHHHHHHHHHhcCchhhHHHhhcChhhCCHHHHHHHHHHHHH
Confidence 1347889999988874 88888764211 1 0000 0 001222334556677778888889
Q ss_pred EEecceeecccccCCCCE
Q 006117 163 IIEGIYALSEKLRPLIDL 180 (660)
Q Consensus 163 IVEGilaL~deLr~llDl 180 (660)
+.++.+++.||+...+|.
T Consensus 165 ~~~p~lllLDEP~~gLD~ 182 (253)
T PRK14261 165 AVNPEVILMDEPCSALDP 182 (253)
T ss_pred hcCCCEEEEeCCcccCCH
Confidence 999999999999999997
No 213
>PRK14275 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.30 E-value=6e-12 Score=132.05 Aligned_cols=137 Identities=18% Similarity=0.235 Sum_probs=103.2
Q ss_pred cceeeeecCceEEEEecceeeccCCcceEEEEECCCCCcHHHHHHHHHHhC---C---CceEEEecCcccc---------
Q 006117 40 EDTLSFEKGFFIVIRACQLLAQKNHGIILVGVAGPSGAGKTVFTEKVLNFM---P---SIAVITMDNYNDS--------- 104 (660)
Q Consensus 40 ~~~ls~~~g~~~vL~~Isl~i~~ge~~~IIGI~GpSGSGKSTLak~L~~lL---p---~~g~I~lDg~~~~--------- 104 (660)
.+++++.++...++++++|.+.+|+ ++||+|+||||||||+++|+++. | ..|.|.++|....
T Consensus 42 ~~~l~~~~~~~~il~~vsl~i~~Ge---~~~l~G~nGsGKSTLl~~L~Gl~~~~p~~~~~G~I~~~g~~i~~~~~~~~~~ 118 (286)
T PRK14275 42 AKNFSIYYGEFEAVKKVNADILSKY---VTAIIGPSGCGKSTFLRAINRMNDLIPSCHTTGALMFDGEDIYGKFTDEVLL 118 (286)
T ss_pred EeeeEEEECCEEEEeeeEEEEcCCC---EEEEECCCCCCHHHHHHHHhcccccCCCCCCceEEEECCEEhhhcccchHHh
Confidence 3555666666679999999999999 99999999999999999999974 3 8999999986431
Q ss_pred cccccccCCCCCCCchhhHHHHHHhhhc--Cc----c----cc------------cccccccccccccceeeecCCccEE
Q 006117 105 SRIIDGNFDDPRLTDYDTLLENIRGLKE--GK----A----VQ------------VPIYDFKSSSRIGYRTLEVPSSRIV 162 (660)
Q Consensus 105 ~~~i~~vfq~p~l~d~~tl~e~L~~L~~--Gk----~----I~------------~PiyD~s~~~rs~~~~~~v~~a~VV 162 (660)
.+.+++++|++.+++. ++.+++..... +. . +. ....+...+..++++.+++..++.+
T Consensus 119 ~~~i~~v~q~~~l~~~-tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~l~~~~~~~~~~LSgGq~qrv~LAraL 197 (286)
T PRK14275 119 RKKIGMVFQKPNPFPK-SIFDNIAYGPRLHGINDKKQLEEIVEKSLRKAALWDEVSDRLDKNALGLSGGQQQRLCVARTL 197 (286)
T ss_pred hhcEEEECCCCCCCcc-CHHHHHHhHHHhcCCCcHHHHHHHHHHHHHHhCCccchhhHhhCChhhCCHHHHHHHHHHHHH
Confidence 1357899999988874 88888763211 10 0 00 0112333345566777888888899
Q ss_pred EEecceeecccccCCCCE
Q 006117 163 IIEGIYALSEKLRPLIDL 180 (660)
Q Consensus 163 IVEGilaL~deLr~llDl 180 (660)
+.++.+++.||+...+|.
T Consensus 198 ~~~p~lllLDEPt~gLD~ 215 (286)
T PRK14275 198 AVEPEILLLDEPTSALDP 215 (286)
T ss_pred hcCCCEEEEeCCCccCCH
Confidence 999999999999999997
No 214
>PRK09544 znuC high-affinity zinc transporter ATPase; Reviewed
Probab=99.30 E-value=4.1e-12 Score=131.04 Aligned_cols=134 Identities=21% Similarity=0.180 Sum_probs=98.0
Q ss_pred cceeeeecCceEEEEecceeeccCCcceEEEEECCCCCcHHHHHHHHHHhC-CCceEEEecCcccccccccccCCCCCCC
Q 006117 40 EDTLSFEKGFFIVIRACQLLAQKNHGIILVGVAGPSGAGKTVFTEKVLNFM-PSIAVITMDNYNDSSRIIDGNFDDPRLT 118 (660)
Q Consensus 40 ~~~ls~~~g~~~vL~~Isl~i~~ge~~~IIGI~GpSGSGKSTLak~L~~lL-p~~g~I~lDg~~~~~~~i~~vfq~p~l~ 118 (660)
.+++++.++...++++++|.+++|+ ++||+|+||||||||+++|++++ |..|.|.+++. ..+++++|++.++
T Consensus 7 ~~~l~~~~~~~~vl~~vs~~i~~Ge---~~~I~G~NGsGKSTLl~~i~Gl~~p~~G~i~~~~~----~~i~~v~q~~~~~ 79 (251)
T PRK09544 7 LENVSVSFGQRRVLSDVSLELKPGK---ILTLLGPNGAGKSTLVRVVLGLVAPDEGVIKRNGK----LRIGYVPQKLYLD 79 (251)
T ss_pred EeceEEEECCceEEEeEEEEEcCCc---EEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCc----cCEEEeccccccc
Confidence 3555566666679999999999999 99999999999999999999998 78999998862 3578889887765
Q ss_pred ch--hhHHHHHHhhhcC---------ccccc-ccccccccccccceeeecCCccEEEEecceeecccccCCCCE
Q 006117 119 DY--DTLLENIRGLKEG---------KAVQV-PIYDFKSSSRIGYRTLEVPSSRIVIIEGIYALSEKLRPLIDL 180 (660)
Q Consensus 119 d~--~tl~e~L~~L~~G---------k~I~~-PiyD~s~~~rs~~~~~~v~~a~VVIVEGilaL~deLr~llDl 180 (660)
+. .++.+++...... +.+.. +..+......++++..++..+..++.++.+++.||+...+|.
T Consensus 80 ~~l~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~LSgGq~qrv~laral~~~p~lllLDEPt~~LD~ 153 (251)
T PRK09544 80 TTLPLTVNRFLRLRPGTKKEDILPALKRVQAGHLIDAPMQKLSGGETQRVLLARALLNRPQLLVLDEPTQGVDV 153 (251)
T ss_pred cccChhHHHHHhccccccHHHHHHHHHHcCChHHHhCChhhCCHHHHHHHHHHHHHhcCCCEEEEeCCCcCCCH
Confidence 53 2455544211000 00111 112333344556677778888889999999999999999997
No 215
>PRK13633 cobalt transporter ATP-binding subunit; Provisional
Probab=99.30 E-value=4e-12 Score=132.78 Aligned_cols=148 Identities=15% Similarity=0.196 Sum_probs=104.9
Q ss_pred eEEEEecceeeccCCcceEEEEECCCCCcHHHHHHHHHHhC-CCceEEEecCcccc--------cccccccCCCCCC-Cc
Q 006117 50 FIVIRACQLLAQKNHGIILVGVAGPSGAGKTVFTEKVLNFM-PSIAVITMDNYNDS--------SRIIDGNFDDPRL-TD 119 (660)
Q Consensus 50 ~~vL~~Isl~i~~ge~~~IIGI~GpSGSGKSTLak~L~~lL-p~~g~I~lDg~~~~--------~~~i~~vfq~p~l-~d 119 (660)
..++++++|.+++|+ +++|+|+||||||||+++|++++ |..|.|.++|.... .+.++++||+|.. +.
T Consensus 23 ~~vl~~vs~~i~~Ge---~~~l~G~nGsGKSTLl~~l~Gl~~~~~G~i~i~g~~i~~~~~~~~~~~~i~~v~q~~~~~~~ 99 (280)
T PRK13633 23 KLALDDVNLEVKKGE---FLVILGRNGSGKSTIAKHMNALLIPSEGKVYVDGLDTSDEENLWDIRNKAGMVFQNPDNQIV 99 (280)
T ss_pred cceeeeeEEEEcCCC---EEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEeccccccHHHHhhheEEEecChhhhhc
Confidence 469999999999999 99999999999999999999998 78999999987532 1347889998742 22
Q ss_pred hhhHHHHHHhhhc--C-c-------------cccc-ccccccccccccceeeecCCccEEEEecceeecccccCCCCEEE
Q 006117 120 YDTLLENIRGLKE--G-K-------------AVQV-PIYDFKSSSRIGYRTLEVPSSRIVIIEGIYALSEKLRPLIDLRV 182 (660)
Q Consensus 120 ~~tl~e~L~~L~~--G-k-------------~I~~-PiyD~s~~~rs~~~~~~v~~a~VVIVEGilaL~deLr~llDlkI 182 (660)
..++.+++..... + . .+.. +..+...+..++++.+++..+..++.++.+++.||+...+|.
T Consensus 100 ~~~v~~~l~~~~~~~~~~~~~~~~~~~~~l~~~gL~~~~~~~~~~LS~G~~qrv~laral~~~p~llllDEPt~gLD~-- 177 (280)
T PRK13633 100 ATIVEEDVAFGPENLGIPPEEIRERVDESLKKVGMYEYRRHAPHLLSGGQKQRVAIAGILAMRPECIIFDEPTAMLDP-- 177 (280)
T ss_pred cccHHHHHHhhHhhcCCCHHHHHHHHHHHHHHCCCHhHhhCCcccCCHHHHHHHHHHHHHHcCCCEEEEeCCcccCCH--
Confidence 3466666643211 1 0 0011 123334455666777888888999999999999999999997
Q ss_pred EEEcChhHHHHHHHHHHHHH-hCCCH
Q 006117 183 SVTGGVHFDLVKRVFRDIQR-VGQEP 207 (660)
Q Consensus 183 fVdad~dirLiRRI~RDv~e-RGrs~ 207 (660)
.....+..+.+.+.+ .|.+.
T Consensus 178 -----~~~~~l~~~l~~l~~~~g~ti 198 (280)
T PRK13633 178 -----SGRREVVNTIKELNKKYGITI 198 (280)
T ss_pred -----HHHHHHHHHHHHHHHhcCCEE
Confidence 333344444554433 35543
No 216
>PRK14241 phosphate transporter ATP-binding protein; Provisional
Probab=99.30 E-value=4.6e-12 Score=130.40 Aligned_cols=138 Identities=17% Similarity=0.189 Sum_probs=105.0
Q ss_pred cceeeeecCceEEEEecceeeccCCcceEEEEECCCCCcHHHHHHHHHHhC-C-----CceEEEecCcccc---------
Q 006117 40 EDTLSFEKGFFIVIRACQLLAQKNHGIILVGVAGPSGAGKTVFTEKVLNFM-P-----SIAVITMDNYNDS--------- 104 (660)
Q Consensus 40 ~~~ls~~~g~~~vL~~Isl~i~~ge~~~IIGI~GpSGSGKSTLak~L~~lL-p-----~~g~I~lDg~~~~--------- 104 (660)
.+++++.++...++++++|.+++|+ ++||+|+||||||||+++|++++ | ..|.|.++|....
T Consensus 7 i~~v~~~~~~~~~l~~isl~i~~Ge---~~~i~G~nGsGKSTLl~~laGl~~~~~~~~~~G~I~~~g~~~~~~~~~~~~~ 83 (258)
T PRK14241 7 VKDLNIYYGSFHAVEDVNLNIEPRS---VTAFIGPSGCGKSTVLRTLNRMHEVIPGARVEGEVLLDGEDLYGPGVDPVAV 83 (258)
T ss_pred EeeEEEEECCEeeeeeeeEEEcCCc---EEEEECCCCCCHHHHHHHHhccCCcccCCCcceEEEECCEeccccccChHHH
Confidence 3555555566689999999999999 99999999999999999999997 3 5899999986531
Q ss_pred cccccccCCCCCCCchhhHHHHHHhhhc--C----cc-----------ccc-----ccccccccccccceeeecCCccEE
Q 006117 105 SRIIDGNFDDPRLTDYDTLLENIRGLKE--G----KA-----------VQV-----PIYDFKSSSRIGYRTLEVPSSRIV 162 (660)
Q Consensus 105 ~~~i~~vfq~p~l~d~~tl~e~L~~L~~--G----k~-----------I~~-----PiyD~s~~~rs~~~~~~v~~a~VV 162 (660)
.+.++++||++.+++..++.+++..... + .. +.. ...+......++++.+++..++.+
T Consensus 84 ~~~i~~~~q~~~~~~~~tv~~nl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~LS~G~~qrv~laral 163 (258)
T PRK14241 84 RRTIGMVFQRPNPFPTMSIRDNVVAGLKLNGVRNKKDLDELVEKSLRGANLWNEVKDRLDKPGGGLSGGQQQRLCIARAI 163 (258)
T ss_pred hcceEEEccccccCCCCcHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHcCCchhhhhHhhCCcccCCHHHHHHHHHHHHH
Confidence 1347899999998888889888753211 1 00 000 112233344566777788888999
Q ss_pred EEecceeecccccCCCCE
Q 006117 163 IIEGIYALSEKLRPLIDL 180 (660)
Q Consensus 163 IVEGilaL~deLr~llDl 180 (660)
+.++.+++.||+...+|.
T Consensus 164 ~~~p~llllDEPt~~LD~ 181 (258)
T PRK14241 164 AVEPDVLLMDEPCSALDP 181 (258)
T ss_pred hcCCCEEEEcCCCccCCH
Confidence 999999999999999997
No 217
>PRK13632 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=99.30 E-value=2.7e-12 Score=133.35 Aligned_cols=138 Identities=17% Similarity=0.212 Sum_probs=102.7
Q ss_pred cceeeeec--CceEEEEecceeeccCCcceEEEEECCCCCcHHHHHHHHHHhC-CCceEEEecCcccc-------ccccc
Q 006117 40 EDTLSFEK--GFFIVIRACQLLAQKNHGIILVGVAGPSGAGKTVFTEKVLNFM-PSIAVITMDNYNDS-------SRIID 109 (660)
Q Consensus 40 ~~~ls~~~--g~~~vL~~Isl~i~~ge~~~IIGI~GpSGSGKSTLak~L~~lL-p~~g~I~lDg~~~~-------~~~i~ 109 (660)
.+++++.+ +...++++++|.+++|+ ++||+|+||||||||+++|++++ |..|.|.++|.... .+.++
T Consensus 10 ~~nl~~~~~~~~~~il~~isl~i~~Ge---~~~l~G~nGsGKSTLl~~l~Gl~~p~~G~I~~~g~~i~~~~~~~~~~~i~ 86 (271)
T PRK13632 10 VENVSFSYPNSENNALKNVSFEINEGE---YVAILGHNGSGKSTISKILTGLLKPQSGEIKIDGITISKENLKEIRKKIG 86 (271)
T ss_pred EEeEEEEcCCCCccceeeeEEEEcCCC---EEEEECCCCCCHHHHHHHHhcCCCCCCceEEECCEecCcCCHHHHhcceE
Confidence 34455554 34579999999999999 99999999999999999999998 78999999997532 13478
Q ss_pred ccCCCCC-CCchhhHHHHHHhhhc--C---cc-----------ccc-ccccccccccccceeeecCCccEEEEecceeec
Q 006117 110 GNFDDPR-LTDYDTLLENIRGLKE--G---KA-----------VQV-PIYDFKSSSRIGYRTLEVPSSRIVIIEGIYALS 171 (660)
Q Consensus 110 ~vfq~p~-l~d~~tl~e~L~~L~~--G---k~-----------I~~-PiyD~s~~~rs~~~~~~v~~a~VVIVEGilaL~ 171 (660)
+++|++. .++..++.+++..... + .. +.. +..+......++++.+++..++.++.++.+++.
T Consensus 87 ~v~q~~~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrl~laral~~~p~lllL 166 (271)
T PRK13632 87 IIFQNPDNQFIGATVEDDIAFGLENKKVPPKKMKDIIDDLAKKVGMEDYLDKEPQNLSGGQKQRVAIASVLALNPEIIIF 166 (271)
T ss_pred EEEeCHHHhcCcccHHHHHHhHHHHcCCCHHHHHHHHHHHHHHcCCHHHhhCCcccCCHHHHHHHHHHHHHHcCCCEEEE
Confidence 8999974 5666788888854211 0 00 001 112333344556677778888889999999999
Q ss_pred ccccCCCCE
Q 006117 172 EKLRPLIDL 180 (660)
Q Consensus 172 deLr~llDl 180 (660)
||+...+|.
T Consensus 167 DEP~~gLD~ 175 (271)
T PRK13632 167 DESTSMLDP 175 (271)
T ss_pred eCCcccCCH
Confidence 999999997
No 218
>cd03251 ABCC_MsbA MsbA is an essential ABC transporter, closely related to eukaryotic MDR proteins. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.30 E-value=3.1e-12 Score=129.30 Aligned_cols=126 Identities=22% Similarity=0.276 Sum_probs=96.3
Q ss_pred EEEEecceeeccCCcceEEEEECCCCCcHHHHHHHHHHhC-CCceEEEecCcccc-------cccccccCCCCCCCchhh
Q 006117 51 IVIRACQLLAQKNHGIILVGVAGPSGAGKTVFTEKVLNFM-PSIAVITMDNYNDS-------SRIIDGNFDDPRLTDYDT 122 (660)
Q Consensus 51 ~vL~~Isl~i~~ge~~~IIGI~GpSGSGKSTLak~L~~lL-p~~g~I~lDg~~~~-------~~~i~~vfq~p~l~d~~t 122 (660)
.++++++|.+++|+ ++||+|+||||||||+++|++++ |..|.|.++|.... .+.+++++|++.+++ .+
T Consensus 16 ~~l~~i~~~i~~Ge---~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~i~~~~q~~~~~~-~t 91 (234)
T cd03251 16 PVLRDISLDIPAGE---TVALVGPSGSGKSTLVNLIPRFYDVDSGRILIDGHDVRDYTLASLRRQIGLVSQDVFLFN-DT 91 (234)
T ss_pred cceeeeeEEEcCCC---EEEEECCCCCCHHHHHHHHhccccCCCCEEEECCEEhhhCCHHHHHhhEEEeCCCCeecc-cc
Confidence 68999999999999 99999999999999999999998 78999999986432 134788999988876 58
Q ss_pred HHHHHHhhhcCc---cc-------cc-------c-----cccccccccccceeeecCCccEEEEecceeecccccCCCCE
Q 006117 123 LLENIRGLKEGK---AV-------QV-------P-----IYDFKSSSRIGYRTLEVPSSRIVIIEGIYALSEKLRPLIDL 180 (660)
Q Consensus 123 l~e~L~~L~~Gk---~I-------~~-------P-----iyD~s~~~rs~~~~~~v~~a~VVIVEGilaL~deLr~llDl 180 (660)
+.+++....... .+ .. | ..+......++++.+++..++.++.++.+++.||+...+|.
T Consensus 92 v~enl~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~LS~G~~qrv~la~al~~~p~lllLDEP~~~LD~ 171 (234)
T cd03251 92 VAENIAYGRPGATREEVEEAARAANAHEFIMELPEGYDTVIGERGVKLSGGQRQRIAIARALLKDPPILILDEATSALDT 171 (234)
T ss_pred HHHHhhccCCCCCHHHHHHHHHHcCcHHHHHhcccCcceeeccCCCcCCHHHHHHHHHHHHHhcCCCEEEEeCccccCCH
Confidence 888885422110 00 00 0 01222334555677778888889999999999999999997
No 219
>PRK13642 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=99.30 E-value=2.6e-12 Score=134.02 Aligned_cols=138 Identities=15% Similarity=0.165 Sum_probs=103.1
Q ss_pred cceeeeecC---ceEEEEecceeeccCCcceEEEEECCCCCcHHHHHHHHHHhC-CCceEEEecCcccc-------cccc
Q 006117 40 EDTLSFEKG---FFIVIRACQLLAQKNHGIILVGVAGPSGAGKTVFTEKVLNFM-PSIAVITMDNYNDS-------SRII 108 (660)
Q Consensus 40 ~~~ls~~~g---~~~vL~~Isl~i~~ge~~~IIGI~GpSGSGKSTLak~L~~lL-p~~g~I~lDg~~~~-------~~~i 108 (660)
.+++++.++ ...++++++|.+.+|+ ++||+|+||||||||+++|++++ |..|.|.++|.... .+.+
T Consensus 7 ~~~l~~~~~~~~~~~~l~~v~l~i~~Ge---~~~I~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~i~~~~~~~~~~~i 83 (277)
T PRK13642 7 VENLVFKYEKESDVNQLNGVSFSITKGE---WVSIIGQNGSGKSTTARLIDGLFEEFEGKVKIDGELLTAENVWNLRRKI 83 (277)
T ss_pred EEEEEEEcCCCCcCeeeeeeEEEEcCCC---EEEEECCCCCcHHHHHHHHhcCCCCCCCEEEECCEECCcCCHHHHhcce
Confidence 344555543 2459999999999999 99999999999999999999998 78999999987542 1347
Q ss_pred cccCCCCC-CCchhhHHHHHHhhhc--Cc---c-----------ccc-ccccccccccccceeeecCCccEEEEecceee
Q 006117 109 DGNFDDPR-LTDYDTLLENIRGLKE--GK---A-----------VQV-PIYDFKSSSRIGYRTLEVPSSRIVIIEGIYAL 170 (660)
Q Consensus 109 ~~vfq~p~-l~d~~tl~e~L~~L~~--Gk---~-----------I~~-PiyD~s~~~rs~~~~~~v~~a~VVIVEGilaL 170 (660)
+++||++. .++..++.+++..... +. . +.. ...+...+..++++.+++..++.++.++.+++
T Consensus 84 ~~v~q~~~~~~~~~tv~eni~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~lAraL~~~p~lll 163 (277)
T PRK13642 84 GMVFQNPDNQFVGATVEDDVAFGMENQGIPREEMIKRVDEALLAVNMLDFKTREPARLSGGQKQRVAVAGIIALRPEIII 163 (277)
T ss_pred EEEEECHHHhhccCCHHHHHHhhHHHcCCCHHHHHHHHHHHHHHCCCHhHhhCCcccCCHHHHHHHHHHHHHHcCCCEEE
Confidence 89999985 5666788888863211 10 0 000 11233344556677778888899999999999
Q ss_pred cccccCCCCE
Q 006117 171 SEKLRPLIDL 180 (660)
Q Consensus 171 ~deLr~llDl 180 (660)
.||+...+|.
T Consensus 164 lDEPt~~LD~ 173 (277)
T PRK13642 164 LDESTSMLDP 173 (277)
T ss_pred EeCCcccCCH
Confidence 9999999997
No 220
>cd07762 CYTH-like_Pase_1 Uncharacterized subgroup 1 of the CYTH-like superfamily. Enzymes belonging to the CYTH-like (also known as triphosphate tunnel metalloenzyme (TTM)-like) superfamily hydrolyze triphosphate-containing substrates, require metal cations as cofactors, and have a unique active site located at the center of an eight-stranded antiparallel beta barrel tunnel (the triphosphate tunnel). The name CYTH originated from the gene designation for bacterial class IV adenylyl cyclases (CyaB) and from thiamine triphosphatase. Class IV adenylate cyclases catalyze the conversion of ATP to 3',5'-cyclic AMP (cAMP) and PPi. Thiamine triphosphatase is a soluble cytosolic enzyme which converts thiamine triphosphate to thiamine diphosphate. This domain superfamily also contains RNA triphosphatases, membrane-associated polyphosphate polymerases, tripolyphosphatases, nucleoside triphosphatases, nucleoside tetraphosphatases and other proteins with unknown functions. Proteins of this subgroup
Probab=99.30 E-value=3.6e-11 Score=118.72 Aligned_cols=121 Identities=14% Similarity=0.022 Sum_probs=104.5
Q ss_pred ccceeeeeecCCCCCcccccceEEEeecCCeEEEEEeeeecCCCceeeeeEEEEee---------------hhhHHHHhh
Q 006117 277 TEETYDIYLLPPGEDPDACQSYLRMRNRDGKYNLMFEEWVTDSPFIISPRITFEVS---------------VRLLGGLMA 341 (660)
Q Consensus 277 ~~~~~DIYl~pP~~d~~~tde~LRvR~~dg~~~Ltykg~~~d~~fi~rp~~efeV~---------------v~~~~gL~~ 341 (660)
...+.|+||..|+.++...+.+||+|..|+++.+|||+|.. ..+++.+.+|+ -.+.+.|.+
T Consensus 26 ~~~q~n~Yfdtp~~~l~~~~~aLRiR~~~~~~~~TlK~~~~----~~r~E~e~~l~~~~~~~~~~~~~~~~~~~~~~L~~ 101 (180)
T cd07762 26 FFKQTNYYFDTPDFALKKKHSALRIREKEGKAELTLKVPQE----VGLLETNQPLTLEEAEKLIKGGTLPEGEILDKLKE 101 (180)
T ss_pred cEEEEEEEEeCCCHHHHhCCcEEEEEeeCCeEEEEEeeCCC----CCCcEEeecCCHHHHHHHhccccCCchHHHHHHHH
Confidence 34456999999999999999999999999999999999985 56888888887 256778899
Q ss_pred cCCeE-----EEEEEEeeeEeecCcEEEEeecccccCcceEEEEe------ccHHHHHHHHHHcCCCCCcc
Q 006117 342 LGYTI-----ATILKRSSHIFYDDRVCVKTDWLEQLNRKYVQVQG------RDRLYVKYVGEQLGLDGSYV 401 (660)
Q Consensus 342 LGy~~-----aa~V~R~re~y~~g~~~i~lD~ve~Lg~~FveI~g------~~~~~v~~~~~~Lgl~G~~i 401 (660)
+||.. .+.+.+.|..|..++.++|||++++||..++||+- ..++.+.+++++|||.-.+.
T Consensus 102 lg~~~~~l~~~~~~~t~R~~~~~~~~~l~LD~~~~lg~~d~ElE~e~~~~~~~~~~~~~ll~~~gi~~~~~ 172 (180)
T cd07762 102 LGIDPSELKLFGSLTTIRAEIPYEGGLLVLDHSLYLGITDYELEYEVDDYEAGKKAFLELLKQYNIPYRPA 172 (180)
T ss_pred hCCCcccEEEEeeEEEEEEEEEeCCEEEEEeccEeCCCeeEEEEEEeCCHHHHHHHHHHHHHHcCCCcccC
Confidence 99985 99999999999999999999999999955588853 36788999999999986443
No 221
>PRK14259 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.30 E-value=4.7e-12 Score=131.56 Aligned_cols=137 Identities=19% Similarity=0.196 Sum_probs=103.4
Q ss_pred cceeeeecCceEEEEecceeeccCCcceEEEEECCCCCcHHHHHHHHHHhC------CCceEEEecCcccc---------
Q 006117 40 EDTLSFEKGFFIVIRACQLLAQKNHGIILVGVAGPSGAGKTVFTEKVLNFM------PSIAVITMDNYNDS--------- 104 (660)
Q Consensus 40 ~~~ls~~~g~~~vL~~Isl~i~~ge~~~IIGI~GpSGSGKSTLak~L~~lL------p~~g~I~lDg~~~~--------- 104 (660)
.+++++.++...++++++|.+++|+ ++||+|+||||||||+++|++++ |..|.|.++|....
T Consensus 16 i~nl~~~~~~~~il~~is~~i~~Ge---~~~l~G~nGsGKSTLl~~l~Gl~~~~~~~p~~G~v~~~g~~i~~~~~~~~~~ 92 (269)
T PRK14259 16 LQNVTISYGTFEAVKNVFCDIPRGK---VTALIGPSGCGKSTVLRSLNRMNDLIEGCSLKGRVLFDGTDLYDPRVDPVEV 92 (269)
T ss_pred EEeEEEEECCEEEEcceEEEEcCCC---EEEEECCCCCCHHHHHHHHhccccccCCCCCceEEEECCEEcccccCCHHHH
Confidence 3555566666789999999999999 99999999999999999999986 37899999986431
Q ss_pred cccccccCCCCCCCchhhHHHHHHhhhc--C--c----cc-------cc-----ccccccccccccceeeecCCccEEEE
Q 006117 105 SRIIDGNFDDPRLTDYDTLLENIRGLKE--G--K----AV-------QV-----PIYDFKSSSRIGYRTLEVPSSRIVII 164 (660)
Q Consensus 105 ~~~i~~vfq~p~l~d~~tl~e~L~~L~~--G--k----~I-------~~-----PiyD~s~~~rs~~~~~~v~~a~VVIV 164 (660)
.+.++++||++.+++ .++.+++..... + . .+ .. ...+......++++.+++..++.++.
T Consensus 93 ~~~i~~v~q~~~l~~-~tv~enl~~~~~~~~~~~~~~~~~~~~l~~~~l~~~l~~~~~~~~~~LS~G~~qrl~laral~~ 171 (269)
T PRK14259 93 RRRIGMVFQQPNPFP-KSIYENIAFGARINGYTGDMDELVERSLRKAAVWDECKDKLNESGYSLSGGQQQRLCIARTIAI 171 (269)
T ss_pred hhceEEEccCCccch-hhHHHHHhhhhhhcCCcHHHHHHHHHHHHHhCCcchhhhhhCCCcccCCHHHHHHHHHHHHHhc
Confidence 134789999998887 489988864211 1 0 00 00 01222334455667778888899999
Q ss_pred ecceeecccccCCCCE
Q 006117 165 EGIYALSEKLRPLIDL 180 (660)
Q Consensus 165 EGilaL~deLr~llDl 180 (660)
++.+++.||+...+|.
T Consensus 172 ~p~lllLDEPt~gLD~ 187 (269)
T PRK14259 172 EPEVILMDEPCSALDP 187 (269)
T ss_pred CCCEEEEcCCCccCCH
Confidence 9999999999999997
No 222
>PRK14269 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.29 E-value=3.7e-12 Score=130.26 Aligned_cols=136 Identities=15% Similarity=0.188 Sum_probs=103.2
Q ss_pred ceeeeecCceEEEEecceeeccCCcceEEEEECCCCCcHHHHHHHHHHhC----CCceEEEecCcccc-------ccccc
Q 006117 41 DTLSFEKGFFIVIRACQLLAQKNHGIILVGVAGPSGAGKTVFTEKVLNFM----PSIAVITMDNYNDS-------SRIID 109 (660)
Q Consensus 41 ~~ls~~~g~~~vL~~Isl~i~~ge~~~IIGI~GpSGSGKSTLak~L~~lL----p~~g~I~lDg~~~~-------~~~i~ 109 (660)
+++++.++...++++++|.+.+|+ ++||+|+||||||||+++|++++ |..|.|.++|.... .+.++
T Consensus 6 ~~l~~~~~~~~~l~~isl~i~~Ge---~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~G~i~~~g~~i~~~~~~~~~~~i~ 82 (246)
T PRK14269 6 TNLNLFYGKKQALFDINMQIEQNK---ITALIGASGCGKSTFLRCFNRMNDKIAKIDGLVEIEGKDVKNQDVVALRKNVG 82 (246)
T ss_pred eeeEEEECCEeeeeeeEEEEcCCC---EEEEECCCCCCHHHHHHHHhcccCCCCCCceEEEECCEecccCCHHHHhhhEE
Confidence 455566666789999999999999 99999999999999999999986 47899999997532 13578
Q ss_pred ccCCCCCCCchhhHHHHHHhhhc--C-----c-----------ccccc-----cccccccccccceeeecCCccEEEEec
Q 006117 110 GNFDDPRLTDYDTLLENIRGLKE--G-----K-----------AVQVP-----IYDFKSSSRIGYRTLEVPSSRIVIIEG 166 (660)
Q Consensus 110 ~vfq~p~l~d~~tl~e~L~~L~~--G-----k-----------~I~~P-----iyD~s~~~rs~~~~~~v~~a~VVIVEG 166 (660)
++||++.+|+ .++.+++..... + . .+..+ ..+......++++.+++..++.++.++
T Consensus 83 ~~~q~~~l~~-~tv~eni~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~LS~G~~qrv~laral~~~p 161 (246)
T PRK14269 83 MVFQQPNVFV-KSIYENISYAPKLHGMIKNKDEEEALVVDCLQKVGLFEEVKDKLKQNALALSGGQQQRLCIARALAIKP 161 (246)
T ss_pred EEecCCcccc-ccHHHHhhhHHhhcCcccChHHHHHHHHHHHHHcCCChhhhHHhcCCcccCCHHHHHHHHHHHHHhcCC
Confidence 9999999887 588888753210 0 0 00110 012223344566777888888999999
Q ss_pred ceeecccccCCCCE
Q 006117 167 IYALSEKLRPLIDL 180 (660)
Q Consensus 167 ilaL~deLr~llDl 180 (660)
.+++.||+...+|.
T Consensus 162 ~lllLDEP~~~LD~ 175 (246)
T PRK14269 162 KLLLLDEPTSALDP 175 (246)
T ss_pred CEEEEcCCcccCCH
Confidence 99999999999997
No 223
>PRK10938 putative molybdenum transport ATP-binding protein ModF; Provisional
Probab=99.29 E-value=4.4e-12 Score=142.06 Aligned_cols=137 Identities=10% Similarity=0.041 Sum_probs=101.2
Q ss_pred ccceeeeecCceEEEEecceeeccCCcceEEEEECCCCCcHHHHHHHHHHhC-CCceEEEecCccccc-------ccccc
Q 006117 39 IEDTLSFEKGFFIVIRACQLLAQKNHGIILVGVAGPSGAGKTVFTEKVLNFM-PSIAVITMDNYNDSS-------RIIDG 110 (660)
Q Consensus 39 ~~~~ls~~~g~~~vL~~Isl~i~~ge~~~IIGI~GpSGSGKSTLak~L~~lL-p~~g~I~lDg~~~~~-------~~i~~ 110 (660)
..+++++.++...+++++||.+++|+ ++||+|+||||||||+++|++++ |+.|.|.+++..... +.+++
T Consensus 5 ~~~~l~~~~~~~~il~~vsl~i~~Ge---~~~liG~nGsGKSTLl~~l~G~~~p~~G~i~~~~~~~~~~~~~~~~~~i~~ 81 (490)
T PRK10938 5 QISQGTFRLSDTKTLQLPSLTLNAGD---SWAFVGANGSGKSALARALAGELPLLSGERQSQFSHITRLSFEQLQKLVSD 81 (490)
T ss_pred EEEeEEEEcCCeeecccceEEEcCCC---EEEEECCCCCCHHHHHHHHhccCCCCCceEEECCcccccCCHHHHHHHhce
Confidence 34666677776779999999999999 99999999999999999999998 789999988753211 23678
Q ss_pred cCCCCCC--C-c-----hhhHHHHHHh----------hhcCccccc-ccccccccccccceeeecCCccEEEEecceeec
Q 006117 111 NFDDPRL--T-D-----YDTLLENIRG----------LKEGKAVQV-PIYDFKSSSRIGYRTLEVPSSRIVIIEGIYALS 171 (660)
Q Consensus 111 vfq~p~l--~-d-----~~tl~e~L~~----------L~~Gk~I~~-PiyD~s~~~rs~~~~~~v~~a~VVIVEGilaL~ 171 (660)
+||++.. + . ..++.+++.. +.+ .+.. ...+...+..++++.+++..+..++.++.+++.
T Consensus 82 ~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~--~~~l~~~~~~~~~~LSgG~~qrv~la~al~~~p~lllL 159 (490)
T PRK10938 82 EWQRNNTDMLSPGEDDTGRTTAEIIQDEVKDPARCEQLAQ--QFGITALLDRRFKYLSTGETRKTLLCQALMSEPDLLIL 159 (490)
T ss_pred eccCcchhhcccchhhccccHHHhcccchhHHHHHHHHHH--HcCCHhhhhCCcccCCHHHHHHHHHHHHHHcCCCEEEE
Confidence 8887642 1 1 2345554321 111 1111 123445566777888889999999999999999
Q ss_pred ccccCCCCE
Q 006117 172 EKLRPLIDL 180 (660)
Q Consensus 172 deLr~llDl 180 (660)
||+...+|.
T Consensus 160 DEPt~~LD~ 168 (490)
T PRK10938 160 DEPFDGLDV 168 (490)
T ss_pred cCCcccCCH
Confidence 999999997
No 224
>cd03297 ABC_ModC_molybdenum_transporter ModC is an ABC-type transporter and the ATPase component of a molybdate transport system that also includes the periplasmic binding protein ModA and the membrane protein ModB. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.29 E-value=3.3e-12 Score=127.71 Aligned_cols=147 Identities=15% Similarity=0.103 Sum_probs=106.6
Q ss_pred eeeeecCceEEEEecceeeccCCcceEEEEECCCCCcHHHHHHHHHHhC-CCceEEEecCcccc-----------ccccc
Q 006117 42 TLSFEKGFFIVIRACQLLAQKNHGIILVGVAGPSGAGKTVFTEKVLNFM-PSIAVITMDNYNDS-----------SRIID 109 (660)
Q Consensus 42 ~ls~~~g~~~vL~~Isl~i~~ge~~~IIGI~GpSGSGKSTLak~L~~lL-p~~g~I~lDg~~~~-----------~~~i~ 109 (660)
++++.++...+ +++|.+++ + ++||+|+||||||||+++|++++ |..|.|.++|.... .+.++
T Consensus 5 ~l~~~~~~~~~--~vsl~i~~-e---~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~~~~i~ 78 (214)
T cd03297 5 DIEKRLPDFTL--KIDFDLNE-E---VTGIFGASGAGKSTLLRCIAGLEKPDGGTIVLNGTVLFDSRKKINLPPQQRKIG 78 (214)
T ss_pred eeeEecCCeee--CceEEEcc-e---eEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEecccccchhhhhhHhhcEE
Confidence 55666676655 99999999 9 99999999999999999999998 78999999986421 13478
Q ss_pred ccCCCCCCCchhhHHHHHHhhhcC-------cc-------cccc-cccccccccccceeeecCCccEEEEecceeecccc
Q 006117 110 GNFDDPRLTDYDTLLENIRGLKEG-------KA-------VQVP-IYDFKSSSRIGYRTLEVPSSRIVIIEGIYALSEKL 174 (660)
Q Consensus 110 ~vfq~p~l~d~~tl~e~L~~L~~G-------k~-------I~~P-iyD~s~~~rs~~~~~~v~~a~VVIVEGilaL~deL 174 (660)
+++|++.+++..++.+++...... .. +..+ ..+......++++.+++..+..++.++.+++.||+
T Consensus 79 ~~~q~~~~~~~~t~~~~l~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~la~al~~~p~llllDEP 158 (214)
T cd03297 79 LVFQQYALFPHLNVRENLAFGLKRKRNREDRISVDELLDLLGLDHLLNRYPAQLSGGEKQRVALARALAAQPELLLLDEP 158 (214)
T ss_pred EEecCCccCCCCCHHHHHHHHHhhCCHHHHHHHHHHHHHHcCCHhHhhcCcccCCHHHHHHHHHHHHHhcCCCEEEEcCC
Confidence 899999888888888887532110 00 1011 12223344556677778888889999999999999
Q ss_pred cCCCCEEEEEEcChhHHHHHHHHHHHH
Q 006117 175 RPLIDLRVSVTGGVHFDLVKRVFRDIQ 201 (660)
Q Consensus 175 r~llDlkIfVdad~dirLiRRI~RDv~ 201 (660)
...+|. ...+.+..+.++..
T Consensus 159 t~~LD~-------~~~~~l~~~l~~~~ 178 (214)
T cd03297 159 FSALDR-------ALRLQLLPELKQIK 178 (214)
T ss_pred cccCCH-------HHHHHHHHHHHHHH
Confidence 999997 33344444444443
No 225
>TIGR02633 xylG D-xylose ABC transporter, ATP-binding protein. Several bacterial species have enzymes xylose isomerase and xylulokinase enzymes for xylose utilization. Members of this protein family are the ATP-binding cassette (ABC) subunit of the known or predicted high-affinity xylose ABC transporter for xylose import. These genes, which closely resemble other sugar transport ABC transporter genes, typically are encoded near xylose utilization enzymes and regulatory proteins. Note that this form of the transporter contains two copies of the ABC transporter domain (pfam00005).
Probab=99.29 E-value=3.9e-12 Score=142.80 Aligned_cols=157 Identities=15% Similarity=0.079 Sum_probs=116.1
Q ss_pred ceeeeecCceEEEEecceeeccCCcceEEEEECCCCCcHHHHHHHHHHhC-C--CceEEEecCcccc--------ccccc
Q 006117 41 DTLSFEKGFFIVIRACQLLAQKNHGIILVGVAGPSGAGKTVFTEKVLNFM-P--SIAVITMDNYNDS--------SRIID 109 (660)
Q Consensus 41 ~~ls~~~g~~~vL~~Isl~i~~ge~~~IIGI~GpSGSGKSTLak~L~~lL-p--~~g~I~lDg~~~~--------~~~i~ 109 (660)
+++++.++...+++++||.+++|+ ++||+|+||||||||+++|++++ | ..|.|.++|.... ...++
T Consensus 5 ~~l~~~~~~~~il~~isl~i~~Ge---~~~liG~nGsGKSTLl~~i~G~~~~~~~~G~i~~~g~~~~~~~~~~~~~~~i~ 81 (500)
T TIGR02633 5 KGIVKTFGGVKALDGIDLEVRPGE---CVGLCGENGAGKSTLMKILSGVYPHGTWDGEIYWSGSPLKASNIRDTERAGIV 81 (500)
T ss_pred EeEEEEeCCeEeecceEEEEeCCc---EEEEECCCCCCHHHHHHHHhCCCCCCCCCeEEEECCEECCCCCHHHHHhCCEE
Confidence 445555566789999999999999 99999999999999999999998 4 5899999986432 13478
Q ss_pred ccCCCCCCCchhhHHHHHHhhhc----C-----cc-----------cccccc--cccccccccceeeecCCccEEEEecc
Q 006117 110 GNFDDPRLTDYDTLLENIRGLKE----G-----KA-----------VQVPIY--DFKSSSRIGYRTLEVPSSRIVIIEGI 167 (660)
Q Consensus 110 ~vfq~p~l~d~~tl~e~L~~L~~----G-----k~-----------I~~Piy--D~s~~~rs~~~~~~v~~a~VVIVEGi 167 (660)
++||++.+++..++.+++..... + +. ...+.+ +...+..++++.+++..+..++.++.
T Consensus 82 ~v~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgG~~qrv~iA~al~~~p~ 161 (500)
T TIGR02633 82 IIHQELTLVPELSVAENIFLGNEITLPGGRMAYNAMYLRAKNLLRELQLDADNVTRPVGDYGGGQQQLVEIAKALNKQAR 161 (500)
T ss_pred EEeeccccCCCCcHHHHHHhhccccccccccCHHHHHHHHHHHHHHcCCCCCcccCchhhCCHHHHHHHHHHHHHhhCCC
Confidence 99999988888888888754210 0 00 011111 22244566778888889999999999
Q ss_pred eeecccccCCCCEEEEEEcChhHHHHHHHHHHHHHhCCCH
Q 006117 168 YALSEKLRPLIDLRVSVTGGVHFDLVKRVFRDIQRVGQEP 207 (660)
Q Consensus 168 laL~deLr~llDlkIfVdad~dirLiRRI~RDv~eRGrs~ 207 (660)
+++.||+...+|. .....+..+.+++.+.|.+.
T Consensus 162 lllLDEPt~~LD~-------~~~~~l~~~l~~l~~~g~tv 194 (500)
T TIGR02633 162 LLILDEPSSSLTE-------KETEILLDIIRDLKAHGVAC 194 (500)
T ss_pred EEEEeCCCCCCCH-------HHHHHHHHHHHHHHhCCCEE
Confidence 9999999999997 34445555555555556544
No 226
>PRK14256 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.29 E-value=6e-12 Score=128.97 Aligned_cols=137 Identities=15% Similarity=0.188 Sum_probs=103.1
Q ss_pred ceeeeecCceEEEEecceeeccCCcceEEEEECCCCCcHHHHHHHHHHhCC------CceEEEecCcccc---------c
Q 006117 41 DTLSFEKGFFIVIRACQLLAQKNHGIILVGVAGPSGAGKTVFTEKVLNFMP------SIAVITMDNYNDS---------S 105 (660)
Q Consensus 41 ~~ls~~~g~~~vL~~Isl~i~~ge~~~IIGI~GpSGSGKSTLak~L~~lLp------~~g~I~lDg~~~~---------~ 105 (660)
+++++.++...++++++|.+++|+ ++||+|+||||||||+++|+++++ +.|.|.++|.... .
T Consensus 8 ~nl~~~~~~~~~l~~isl~i~~Ge---~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~v~~~g~~i~~~~~~~~~~~ 84 (252)
T PRK14256 8 EQLNVHFGKNHAVKDVSMDFPENS---VTAIIGPSGCGKSTVLRSINRMHDLVPSARVTGKILLDDTDIYDRGVDPVSIR 84 (252)
T ss_pred EEEEEEeCCeeEEecceEEEcCCC---EEEEECCCCCCHHHHHHHHHhcccCCCCCCCceEEEECCEEcccccCChHHhh
Confidence 445555556679999999999999 999999999999999999999972 4799999997532 1
Q ss_pred ccccccCCCCCCCchhhHHHHHHhhh-c-C----c----cc-------cc-----ccccccccccccceeeecCCccEEE
Q 006117 106 RIIDGNFDDPRLTDYDTLLENIRGLK-E-G----K----AV-------QV-----PIYDFKSSSRIGYRTLEVPSSRIVI 163 (660)
Q Consensus 106 ~~i~~vfq~p~l~d~~tl~e~L~~L~-~-G----k----~I-------~~-----PiyD~s~~~rs~~~~~~v~~a~VVI 163 (660)
+.++++||++.+++..++.+++.... . + . .+ .. ...+......++++.+++..++.++
T Consensus 85 ~~i~~~~q~~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~LS~G~~qrl~laral~ 164 (252)
T PRK14256 85 RRVGMVFQKPNPFPAMSIYDNVIAGYKLNGRVNRSEADEIVESSLKRVALWDEVKDRLKSNAMELSGGQQQRLCIARTIA 164 (252)
T ss_pred ccEEEEecCCCCCCcCcHHHHHHhHHHhcCCCCHHHHHHHHHHHHHHcCCchhhhHHhhCCcCcCCHHHHHHHHHHHHHh
Confidence 34788999999988888888885311 0 1 0 00 00 0111223345566777888888999
Q ss_pred EecceeecccccCCCCE
Q 006117 164 IEGIYALSEKLRPLIDL 180 (660)
Q Consensus 164 VEGilaL~deLr~llDl 180 (660)
.++.+++.||+...+|.
T Consensus 165 ~~p~llllDEP~~gLD~ 181 (252)
T PRK14256 165 VKPEVILMDEPASALDP 181 (252)
T ss_pred cCCCEEEEcCCcccCCH
Confidence 99999999999999997
No 227
>cd03298 ABC_ThiQ_thiamine_transporter ABC-type thiamine tranport system; part of the binding-protein-dependent transport system tbpA-thiPQ for thiamine and TPP. Probably responsible for the translocation of thiamine across the membrane. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.29 E-value=4.7e-12 Score=126.13 Aligned_cols=134 Identities=19% Similarity=0.230 Sum_probs=100.6
Q ss_pred eeeeecCceEEEEecceeeccCCcceEEEEECCCCCcHHHHHHHHHHhC-CCceEEEecCcccc-----cccccccCCCC
Q 006117 42 TLSFEKGFFIVIRACQLLAQKNHGIILVGVAGPSGAGKTVFTEKVLNFM-PSIAVITMDNYNDS-----SRIIDGNFDDP 115 (660)
Q Consensus 42 ~ls~~~g~~~vL~~Isl~i~~ge~~~IIGI~GpSGSGKSTLak~L~~lL-p~~g~I~lDg~~~~-----~~~i~~vfq~p 115 (660)
++++.++... .+++|.+.+|+ +++|+|+||||||||+++|++++ |..|.|.++|.... .+.+++++|++
T Consensus 5 ~l~~~~~~~~--~~is~~i~~Ge---~~~l~G~nGsGKSTLl~~l~gl~~~~~G~i~~~g~~~~~~~~~~~~i~~~~q~~ 79 (211)
T cd03298 5 KIRFSYGEQP--MHFDLTFAQGE---ITAIVGPSGSGKSTLLNLIAGFETPQSGRVLINGVDVTAAPPADRPVSMLFQEN 79 (211)
T ss_pred eEEEEeCCEe--cceEEEEcCCC---EEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEEcCcCCHhHccEEEEeccc
Confidence 3444444433 39999999999 99999999999999999999998 78999999987432 24578999999
Q ss_pred CCCchhhHHHHHHhhhc-C-c-------c-------ccc-ccccccccccccceeeecCCccEEEEecceeecccccCCC
Q 006117 116 RLTDYDTLLENIRGLKE-G-K-------A-------VQV-PIYDFKSSSRIGYRTLEVPSSRIVIIEGIYALSEKLRPLI 178 (660)
Q Consensus 116 ~l~d~~tl~e~L~~L~~-G-k-------~-------I~~-PiyD~s~~~rs~~~~~~v~~a~VVIVEGilaL~deLr~ll 178 (660)
.+++..++.+++..... . . . ... +..+......++++.+++..++.++.++.+++.||+...+
T Consensus 80 ~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~ia~al~~~p~llllDEP~~~L 159 (211)
T cd03298 80 NLFAHLTVEQNVGLGLSPGLKLTAEDRQAIEVALARVGLAGLEKRLPGELSGGERQRVALARVLVRDKPVLLLDEPFAAL 159 (211)
T ss_pred ccCCCCcHHHHHhcccccccCccHHHHHHHHHHHHHcCCHHHHhCCcccCCHHHHHHHHHHHHHhcCCCEEEEcCCcccC
Confidence 99888899999863211 0 0 0 000 1122333445666777888888899999999999999999
Q ss_pred CE
Q 006117 179 DL 180 (660)
Q Consensus 179 Dl 180 (660)
|.
T Consensus 160 D~ 161 (211)
T cd03298 160 DP 161 (211)
T ss_pred CH
Confidence 97
No 228
>COG1132 MdlB ABC-type multidrug transport system, ATPase and permease components [Defense mechanisms]
Probab=99.29 E-value=1.3e-12 Score=148.70 Aligned_cols=138 Identities=20% Similarity=0.254 Sum_probs=112.8
Q ss_pred ccceeeeecC-ceEEEEecceeeccCCcceEEEEECCCCCcHHHHHHHHHHhC-CCceEEEecCccccc-------cccc
Q 006117 39 IEDTLSFEKG-FFIVIRACQLLAQKNHGIILVGVAGPSGAGKTVFTEKVLNFM-PSIAVITMDNYNDSS-------RIID 109 (660)
Q Consensus 39 ~~~~ls~~~g-~~~vL~~Isl~i~~ge~~~IIGI~GpSGSGKSTLak~L~~lL-p~~g~I~lDg~~~~~-------~~i~ 109 (660)
.-++++|.++ ...+++++||.+++|+ .+||+|+|||||||+++.|.+++ |..|.|.+||.+... +.++
T Consensus 330 ~f~~vsf~y~~~~~vl~~is~~i~~Ge---~vaiVG~sGsGKSTl~~LL~r~~~~~~G~I~idg~dI~~i~~~~lr~~I~ 406 (567)
T COG1132 330 EFENVSFSYPGKKPVLKDISFSIEPGE---KVAIVGPSGSGKSTLIKLLLRLYDPTSGEILIDGIDIRDISLDSLRKRIG 406 (567)
T ss_pred EEEEEEEEcCCCCccccCceEEEcCCC---EEEEECCCCCCHHHHHHHHhccCCCCCCeEEECCEehhhcCHHHHHHhcc
Confidence 3466777777 5789999999999999 99999999999999999999999 789999999975432 5688
Q ss_pred ccCCCCCCCchhhHHHHHHhhhcC---c-------------c-cccc-cccccccc----cccceeeecCCccEEEEecc
Q 006117 110 GNFDDPRLTDYDTLLENIRGLKEG---K-------------A-VQVP-IYDFKSSS----RIGYRTLEVPSSRIVIIEGI 167 (660)
Q Consensus 110 ~vfq~p~l~d~~tl~e~L~~L~~G---k-------------~-I~~P-iyD~s~~~----rs~~~~~~v~~a~VVIVEGi 167 (660)
+++|++.+|+ .++.+|+...... + . ...| .||...++ .++++++++..++.++-+..
T Consensus 407 ~V~Qd~~LF~-~TI~~NI~~g~~~at~eei~~a~k~a~~~d~I~~lp~g~dt~vge~G~~LSgGQrQrlaiARall~~~~ 485 (567)
T COG1132 407 IVSQDPLLFS-GTIRENIALGRPDATDEEIEEALKLANAHEFIANLPDGYDTIVGERGVNLSGGQRQRLAIARALLRNPP 485 (567)
T ss_pred EEcccceeec-ccHHHHHhcCCCCCCHHHHHHHHHHhChHHHHHhCcccccceecCCCccCCHHHHHHHHHHHHHhcCCC
Confidence 9999999999 8999999765431 0 0 1224 35655542 45678889999999999999
Q ss_pred eeecccccCCCCE
Q 006117 168 YALSEKLRPLIDL 180 (660)
Q Consensus 168 laL~deLr~llDl 180 (660)
+++.||....+|.
T Consensus 486 ILILDEaTSalD~ 498 (567)
T COG1132 486 ILILDEATSALDT 498 (567)
T ss_pred EEEEeccccccCH
Confidence 9999999999987
No 229
>COG4618 ArpD ABC-type protease/lipase transport system, ATPase and permease components [General function prediction only]
Probab=99.29 E-value=2.9e-12 Score=141.29 Aligned_cols=187 Identities=18% Similarity=0.207 Sum_probs=129.7
Q ss_pred CCCCccCccccchhhhhcccCCCceeeeeccceeeee--cCceEEEEecceeeccCCcceEEEEECCCCCcHHHHHHHHH
Q 006117 10 DSPRRRPGLLRDQVQLVKKKDSDRYEIVPIEDTLSFE--KGFFIVIRACQLLAQKNHGIILVGVAGPSGAGKTVFTEKVL 87 (660)
Q Consensus 10 ~S~~r~~~ll~~~~~l~~~~~~~~~ei~~~~~~ls~~--~g~~~vL~~Isl~i~~ge~~~IIGI~GpSGSGKSTLak~L~ 87 (660)
.|+.|.+++|+.-+.-.++-.-...+=....+.+.+- .....++++++|.+.+|+ .+||+||||||||||++.|.
T Consensus 307 ~s~~Rl~~lL~~~p~~~~~m~LP~P~g~L~Ve~l~~~PPg~~~pil~~isF~l~~G~---~lgIIGPSgSGKSTLaR~lv 383 (580)
T COG4618 307 QSYKRLNELLAELPAAAERMPLPAPQGALSVERLTAAPPGQKKPILKGISFALQAGE---ALGIIGPSGSGKSTLARLLV 383 (580)
T ss_pred HHHHHHHHHHHhCccccCCCCCCCCCceeeEeeeeecCCCCCCcceecceeEecCCc---eEEEECCCCccHHHHHHHHH
Confidence 4667777777664433222111001111222333222 234589999999999999 99999999999999999999
Q ss_pred HhC-CCceEEEecCccccc-------ccccccCCCCCCCchhhHHHHHHhhhcCcc-----------------cccc-cc
Q 006117 88 NFM-PSIAVITMDNYNDSS-------RIIDGNFDDPRLTDYDTLLENIRGLKEGKA-----------------VQVP-IY 141 (660)
Q Consensus 88 ~lL-p~~g~I~lDg~~~~~-------~~i~~vfq~p~l~d~~tl~e~L~~L~~Gk~-----------------I~~P-iy 141 (660)
+.. |..|.|.+||..... +.++|.+|+-.+|+ -|+.||+.++.+..+ ...| -|
T Consensus 384 G~w~p~~G~VRLDga~l~qWd~e~lG~hiGYLPQdVeLF~-GTIaeNIaRf~~~~d~~kIieAA~lAgvHelIl~lP~GY 462 (580)
T COG4618 384 GIWPPTSGSVRLDGADLRQWDREQLGRHIGYLPQDVELFD-GTIAENIARFGEEADPEKVIEAARLAGVHELILRLPQGY 462 (580)
T ss_pred cccccCCCcEEecchhhhcCCHHHhccccCcCcccceecC-CcHHHHHHhccccCCHHHHHHHHHHcChHHHHHhCcCCc
Confidence 998 899999999975432 56899999999998 699999987763211 2223 36
Q ss_pred cccccc----cccceeeecCCccEEEEecceeecccccCCCCEEEEEEcChhHHHHHHHHHHHHHhCCCH
Q 006117 142 DFKSSS----RIGYRTLEVPSSRIVIIEGIYALSEKLRPLIDLRVSVTGGVHFDLVKRVFRDIQRVGQEP 207 (660)
Q Consensus 142 D~s~~~----rs~~~~~~v~~a~VVIVEGilaL~deLr~llDlkIfVdad~dirLiRRI~RDv~eRGrs~ 207 (660)
|-..++ .++++.+++..++.+.=++.++..||+...+|- .-+..+.+-| -.++.+|.+.
T Consensus 463 dT~iG~~G~~LSgGQRQRIaLARAlYG~P~lvVLDEPNsNLD~------~GE~AL~~Ai-~~~k~rG~~v 525 (580)
T COG4618 463 DTRIGEGGATLSGGQRQRIALARALYGDPFLVVLDEPNSNLDS------EGEAALAAAI-LAAKARGGTV 525 (580)
T ss_pred cCccCCCCCCCCchHHHHHHHHHHHcCCCcEEEecCCCCCcch------hHHHHHHHHH-HHHHHcCCEE
Confidence 655543 466788889989988889999999999999986 1233444433 3455566554
No 230
>PRK14249 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.28 E-value=6.1e-12 Score=128.88 Aligned_cols=136 Identities=16% Similarity=0.190 Sum_probs=102.4
Q ss_pred ceeeeecCceEEEEecceeeccCCcceEEEEECCCCCcHHHHHHHHHHhC-CC-----ceEEEecCcccc---------c
Q 006117 41 DTLSFEKGFFIVIRACQLLAQKNHGIILVGVAGPSGAGKTVFTEKVLNFM-PS-----IAVITMDNYNDS---------S 105 (660)
Q Consensus 41 ~~ls~~~g~~~vL~~Isl~i~~ge~~~IIGI~GpSGSGKSTLak~L~~lL-p~-----~g~I~lDg~~~~---------~ 105 (660)
+++++.++...++++++|.+.+|+ ++||+|+||||||||+++|++++ |. .|.|.++|.... .
T Consensus 8 ~~l~~~~~~~~il~~~s~~i~~G~---~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~v~~~g~~~~~~~~~~~~~~ 84 (251)
T PRK14249 8 RGVNFFYHKHQVLKNINMDFPERQ---ITAIIGPSGCGKSTLLRALNRMNDIVSGARLEGAVLLDNENIYSPNLDVVNLR 84 (251)
T ss_pred EEEEEEECCeeEecceEEEEcCCC---EEEEECCCCCCHHHHHHHHhcccCccccCCcccEEEECCEEccccccChHHhh
Confidence 455566566679999999999999 99999999999999999999998 54 599999986432 2
Q ss_pred ccccccCCCCCCCchhhHHHHHHhhhc--Ccc--------c-------cc-----ccccccccccccceeeecCCccEEE
Q 006117 106 RIIDGNFDDPRLTDYDTLLENIRGLKE--GKA--------V-------QV-----PIYDFKSSSRIGYRTLEVPSSRIVI 163 (660)
Q Consensus 106 ~~i~~vfq~p~l~d~~tl~e~L~~L~~--Gk~--------I-------~~-----PiyD~s~~~rs~~~~~~v~~a~VVI 163 (660)
+.++++||++.+++. ++.+++..... +.. + .. ...+......++++.+++..++.++
T Consensus 85 ~~i~~v~q~~~~~~~-tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~l~~~~~~~~~~LS~Gq~qrv~laral~ 163 (251)
T PRK14249 85 KRVGMVFQQPNPFPK-SIFDNVAFGPRMLGTTAQSRLDEVVEKSLRQAALWDEVKDNLHKSGLALSGGQQQRLCIARVLA 163 (251)
T ss_pred ceEEEEecCCccCcC-cHHHHHhhHHHhcCCChhhHHHHHHHHHHHHhCCchhhhhHhhCCcccCCHHHHHHHHHHHHHh
Confidence 357899999988874 88888753211 100 0 00 0122333345566777888888999
Q ss_pred EecceeecccccCCCCE
Q 006117 164 IEGIYALSEKLRPLIDL 180 (660)
Q Consensus 164 VEGilaL~deLr~llDl 180 (660)
.++.+++.||+...+|.
T Consensus 164 ~~p~lllLDEPt~~LD~ 180 (251)
T PRK14249 164 IEPEVILMDEPCSALDP 180 (251)
T ss_pred cCCCEEEEeCCCccCCH
Confidence 99999999999999997
No 231
>COG4604 CeuD ABC-type enterochelin transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=99.28 E-value=4.1e-12 Score=126.27 Aligned_cols=165 Identities=16% Similarity=0.214 Sum_probs=114.7
Q ss_pred ceeeeecCceEEEEecceeeccCCcceEEEEECCCCCcHHHHHHHHHHhC-CCceEEEecCccccc-------ccccccC
Q 006117 41 DTLSFEKGFFIVIRACQLLAQKNHGIILVGVAGPSGAGKTVFTEKVLNFM-PSIAVITMDNYNDSS-------RIIDGNF 112 (660)
Q Consensus 41 ~~ls~~~g~~~vL~~Isl~i~~ge~~~IIGI~GpSGSGKSTLak~L~~lL-p~~g~I~lDg~~~~~-------~~i~~vf 112 (660)
++++..++...+++++|+.+++|+ +.+|+||||||||||+.+++.++ .+.|.|.+||..... +.+...-
T Consensus 5 ~nv~K~y~~~~vl~~isl~i~~g~---iTs~IGPNGAGKSTLLS~~sRL~~~d~G~i~i~g~~~~~~~s~~LAk~lSILk 81 (252)
T COG4604 5 ENVSKSYGTKVVLDDVSLDIPKGG---ITSIIGPNGAGKSTLLSMMSRLLKKDSGEITIDGLELTSTPSKELAKKLSILK 81 (252)
T ss_pred hhhhHhhCCEEeeccceeeecCCc---eeEEECCCCccHHHHHHHHHHhccccCceEEEeeeecccCChHHHHHHHHHHH
Confidence 344555688999999999999999 99999999999999999999999 699999999985432 2233333
Q ss_pred CCCCCCchhhHHHHHHhhh----cCcc--------------cc-cccccccccccccceeeecCCccEEEEecceeeccc
Q 006117 113 DDPRLTDYDTLLENIRGLK----EGKA--------------VQ-VPIYDFKSSSRIGYRTLEVPSSRIVIIEGIYALSEK 173 (660)
Q Consensus 113 q~p~l~d~~tl~e~L~~L~----~Gk~--------------I~-~PiyD~s~~~rs~~~~~~v~~a~VVIVEGilaL~de 173 (660)
|.....-..++++.+..-+ .|+. .. .+.-|....+.++++.++.-.+-|+.-+--|++.||
T Consensus 82 Q~N~i~~rlTV~dLv~FGRfPYSqGRlt~eD~~~I~~aieyl~L~~l~dryLd~LSGGQrQRAfIAMVlaQdTdyvlLDE 161 (252)
T COG4604 82 QENHINSRLTVRDLVGFGRFPYSQGRLTKEDRRIINEAIEYLHLEDLSDRYLDELSGGQRQRAFIAMVLAQDTDYVLLDE 161 (252)
T ss_pred hhchhhheeEHHHHhhcCCCcccCCCCchHHHHHHHHHHHHhcccchHHHhHHhcccchhhhhhhheeeeccCcEEEecC
Confidence 4333333444554443211 1110 00 112233445567888888888999999999999999
Q ss_pred ccCCCCEEEEEEcChhHHHHHHHHHHHHHhCCCHHHHHHHH
Q 006117 174 LRPLIDLRVSVTGGVHFDLVKRVFRDIQRVGQEPEEIIHQI 214 (660)
Q Consensus 174 Lr~llDlkIfVdad~dirLiRRI~RDv~eRGrs~E~Vl~qy 214 (660)
+.+.+|++ .......-++|-..+-|++.--|+|.+
T Consensus 162 PLNNLDmk------Hsv~iMk~Lrrla~el~KtiviVlHDI 196 (252)
T COG4604 162 PLNNLDMK------HSVQIMKILRRLADELGKTIVVVLHDI 196 (252)
T ss_pred cccccchH------HHHHHHHHHHHHHHHhCCeEEEEEecc
Confidence 99999996 333444445555556677766555554
No 232
>PRK11819 putative ABC transporter ATP-binding protein; Reviewed
Probab=99.28 E-value=4.6e-12 Score=144.42 Aligned_cols=136 Identities=17% Similarity=0.114 Sum_probs=106.4
Q ss_pred eccceeeeecC-ceEEEEecceeeccCCcceEEEEECCCCCcHHHHHHHHHHhC-CCceEEEecCcccccccccccCCCC
Q 006117 38 PIEDTLSFEKG-FFIVIRACQLLAQKNHGIILVGVAGPSGAGKTVFTEKVLNFM-PSIAVITMDNYNDSSRIIDGNFDDP 115 (660)
Q Consensus 38 ~~~~~ls~~~g-~~~vL~~Isl~i~~ge~~~IIGI~GpSGSGKSTLak~L~~lL-p~~g~I~lDg~~~~~~~i~~vfq~p 115 (660)
...+++++.++ ...++++++|.+++|+ ++||+|+||||||||+++|++.+ |+.|.|.+++. ..+++++|++
T Consensus 7 l~i~~l~~~y~~~~~il~~vs~~i~~Ge---~~~iiG~NGsGKSTLlk~i~G~~~p~~G~i~~~~~----~~i~~v~Q~~ 79 (556)
T PRK11819 7 YTMNRVSKVVPPKKQILKDISLSFFPGA---KIGVLGLNGAGKSTLLRIMAGVDKEFEGEARPAPG----IKVGYLPQEP 79 (556)
T ss_pred EEEeeEEEEeCCCCeeeeCceEEECCCC---EEEEECCCCCCHHHHHHHHhCCCCCCCceEEecCC----CEEEEEecCC
Confidence 34456666666 6789999999999999 99999999999999999999998 78999988642 3588999999
Q ss_pred CCCchhhHHHHHHhh-hc---------------Ccc------------------------------------cccccccc
Q 006117 116 RLTDYDTLLENIRGL-KE---------------GKA------------------------------------VQVPIYDF 143 (660)
Q Consensus 116 ~l~d~~tl~e~L~~L-~~---------------Gk~------------------------------------I~~PiyD~ 143 (660)
.+++..++.+++... .. +.. +..+..+.
T Consensus 80 ~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~ 159 (556)
T PRK11819 80 QLDPEKTVRENVEEGVAEVKAALDRFNEIYAAYAEPDADFDALAAEQGELQEIIDAADAWDLDSQLEIAMDALRCPPWDA 159 (556)
T ss_pred CCCCCCcHHHHHHHhhHHHHHHHHHHHHHHHHhccCchhhHHHHHHHHHHHHHHHhcCccchHHHHHHHHHhCCCCcccC
Confidence 988888888887531 10 000 00111233
Q ss_pred cccccccceeeecCCccEEEEecceeecccccCCCCE
Q 006117 144 KSSSRIGYRTLEVPSSRIVIIEGIYALSEKLRPLIDL 180 (660)
Q Consensus 144 s~~~rs~~~~~~v~~a~VVIVEGilaL~deLr~llDl 180 (660)
..+..++++..++..+..++.++.+++.||+.+.+|.
T Consensus 160 ~~~~LSgGqkqrv~la~al~~~p~vlLLDEPt~~LD~ 196 (556)
T PRK11819 160 KVTKLSGGERRRVALCRLLLEKPDMLLLDEPTNHLDA 196 (556)
T ss_pred chhhcCHHHHHHHHHHHHHhCCCCEEEEcCCCCcCCh
Confidence 4455677788888899999999999999999999997
No 233
>PRK14245 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.28 E-value=5.8e-12 Score=128.93 Aligned_cols=136 Identities=18% Similarity=0.222 Sum_probs=100.5
Q ss_pred ceeeeecCceEEEEecceeeccCCcceEEEEECCCCCcHHHHHHHHHHh---CC---CceEEEecCcccc---------c
Q 006117 41 DTLSFEKGFFIVIRACQLLAQKNHGIILVGVAGPSGAGKTVFTEKVLNF---MP---SIAVITMDNYNDS---------S 105 (660)
Q Consensus 41 ~~ls~~~g~~~vL~~Isl~i~~ge~~~IIGI~GpSGSGKSTLak~L~~l---Lp---~~g~I~lDg~~~~---------~ 105 (660)
+++++.++...++++++|.+++|+ ++||+|+||||||||+++|+++ +| ..|.|.++|.... .
T Consensus 7 ~~~~~~~~~~~~l~~vs~~i~~Ge---~~~i~G~nGsGKSTLl~~i~Gl~~~~~~~~~~G~i~~~g~~~~~~~~~~~~~~ 83 (250)
T PRK14245 7 RDVNFWYGDFHALKGISMEIEEKS---VVAFIGPSGCGKSTFLRLFNRMNDLIPATRLEGEIRIDGRNIYDKGVQVDELR 83 (250)
T ss_pred EEEEEEECCEeEEeeeeEEEeCCC---EEEEECCCCCCHHHHHHHHhhhhcccCCCCCceEEEECCEecccccccHHHHh
Confidence 455555566779999999999999 9999999999999999999986 33 3799999997532 1
Q ss_pred ccccccCCCCCCCchhhHHHHHHhhhc--C----c----c-------cccc-----cccccccccccceeeecCCccEEE
Q 006117 106 RIIDGNFDDPRLTDYDTLLENIRGLKE--G----K----A-------VQVP-----IYDFKSSSRIGYRTLEVPSSRIVI 163 (660)
Q Consensus 106 ~~i~~vfq~p~l~d~~tl~e~L~~L~~--G----k----~-------I~~P-----iyD~s~~~rs~~~~~~v~~a~VVI 163 (660)
+.++++||++.+++ .++.+++..... + . . ...+ ..+......++++..++..++.++
T Consensus 84 ~~i~~v~q~~~~~~-~tv~~nl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~LS~G~~qrv~laral~ 162 (250)
T PRK14245 84 KNVGMVFQRPNPFP-KSIFENVAYGLRVNGVKDNAFIRQRVEETLKGAALWDEVKDKLKESAFALSGGQQQRLCIARAMA 162 (250)
T ss_pred hheEEEecCCccCc-ccHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHcCCCcchhhhhhCCcccCCHHHHHHHHHHHHHh
Confidence 34789999998887 588888753211 0 0 0 0000 112223345566777788888888
Q ss_pred EecceeecccccCCCCE
Q 006117 164 IEGIYALSEKLRPLIDL 180 (660)
Q Consensus 164 VEGilaL~deLr~llDl 180 (660)
.++.+++.||+...+|.
T Consensus 163 ~~p~lllLDEPt~~LD~ 179 (250)
T PRK14245 163 VSPSVLLMDEPASALDP 179 (250)
T ss_pred cCCCEEEEeCCCccCCH
Confidence 99999999999999996
No 234
>COG1129 MglA ABC-type sugar transport system, ATPase component [Carbohydrate transport and metabolism]
Probab=99.28 E-value=2.3e-12 Score=143.61 Aligned_cols=165 Identities=15% Similarity=0.113 Sum_probs=122.3
Q ss_pred cceeeeecCceEEEEecceeeccCCcceEEEEECCCCCcHHHHHHHHHHhC-CCceEEEecCcccc--------cccccc
Q 006117 40 EDTLSFEKGFFIVIRACQLLAQKNHGIILVGVAGPSGAGKTVFTEKVLNFM-PSIAVITMDNYNDS--------SRIIDG 110 (660)
Q Consensus 40 ~~~ls~~~g~~~vL~~Isl~i~~ge~~~IIGI~GpSGSGKSTLak~L~~lL-p~~g~I~lDg~~~~--------~~~i~~ 110 (660)
.++++..++...+|++|+|.+.+|+ +++++|.||||||||+|+|++.+ |+.|.|.+||.... ...+..
T Consensus 11 ~~~i~K~FggV~AL~~v~l~v~~GE---V~aL~GeNGAGKSTLmKiLsGv~~p~~G~I~~~G~~~~~~sp~~A~~~GI~~ 87 (500)
T COG1129 11 LRGISKSFGGVKALDGVSLTVRPGE---VHALLGENGAGKSTLMKILSGVYPPDSGEILIDGKPVAFSSPRDALAAGIAT 87 (500)
T ss_pred eecceEEcCCceeeccceeEEeCce---EEEEecCCCCCHHHHHHHHhCcccCCCceEEECCEEccCCCHHHHHhCCcEE
Confidence 3455555699999999999999999 99999999999999999999999 89999999997432 145778
Q ss_pred cCCCCCCCchhhHHHHHHhhhcCc----ccccc--------c---------ccccccccccceeeecCCccEEEEeccee
Q 006117 111 NFDDPRLTDYDTLLENIRGLKEGK----AVQVP--------I---------YDFKSSSRIGYRTLEVPSSRIVIIEGIYA 169 (660)
Q Consensus 111 vfq~p~l~d~~tl~e~L~~L~~Gk----~I~~P--------i---------yD~s~~~rs~~~~~~v~~a~VVIVEGila 169 (660)
+||+..+++.+++.+|+..-..-. -++.. . .+......+.++.+.++.++.+..+.-++
T Consensus 88 V~QEl~L~p~LsVaeNifLgre~~~~~g~id~~~m~~~A~~~l~~lg~~~~~~~~v~~LsiaqrQ~VeIArAl~~~arll 167 (500)
T COG1129 88 VHQELSLVPNLSVAENIFLGREPTRRFGLIDRKAMRRRARELLARLGLDIDPDTLVGDLSIAQRQMVEIARALSFDARVL 167 (500)
T ss_pred EeechhccCCccHHHHhhcccccccCCCccCHHHHHHHHHHHHHHcCCCCChhhhhhhCCHHHHHHHHHHHHHhcCCCEE
Confidence 999999999999999996322110 00000 0 11111222233555677778888888888
Q ss_pred ecccccCCCCEEEEEEcChhHHHHHHHHHHHHHhCCCHHHHHHHH
Q 006117 170 LSEKLRPLIDLRVSVTGGVHFDLVKRVFRDIQRVGQEPEEIIHQI 214 (660)
Q Consensus 170 L~deLr~llDlkIfVdad~dirLiRRI~RDv~eRGrs~E~Vl~qy 214 (660)
+.|||...++. .++...-++.|+.+.+|.+.--|.|++
T Consensus 168 IlDEPTaaLt~-------~E~~~Lf~~ir~Lk~~Gv~ii~ISHrl 205 (500)
T COG1129 168 ILDEPTAALTV-------KETERLFDLIRRLKAQGVAIIYISHRL 205 (500)
T ss_pred EEcCCcccCCH-------HHHHHHHHHHHHHHhCCCEEEEEcCcH
Confidence 88999998876 566677778888888898765554544
No 235
>cd03254 ABCC_Glucan_exporter_like Glucan exporter ATP-binding protein. In A. tumefaciens cyclic beta-1, 2-glucan must be transported into the periplasmic space to exert its action as a virluence factor. This subfamily belongs to the MRP-like family and is involved in drug, peptide, and lipid export. The MRP-like family, similar to all ABC proteins, have a common four-domain core structure constituted by two membrane-spanning domains each composed of six transmembrane (TM) helices and two nucleotide-binding domains (NBD). ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.28 E-value=3.5e-12 Score=128.50 Aligned_cols=136 Identities=19% Similarity=0.249 Sum_probs=101.2
Q ss_pred ceeeeecCc-eEEEEecceeeccCCcceEEEEECCCCCcHHHHHHHHHHhC-CCceEEEecCcccc-------ccccccc
Q 006117 41 DTLSFEKGF-FIVIRACQLLAQKNHGIILVGVAGPSGAGKTVFTEKVLNFM-PSIAVITMDNYNDS-------SRIIDGN 111 (660)
Q Consensus 41 ~~ls~~~g~-~~vL~~Isl~i~~ge~~~IIGI~GpSGSGKSTLak~L~~lL-p~~g~I~lDg~~~~-------~~~i~~v 111 (660)
+++++.++. ..++++++|.+++|+ +++|+||||||||||+++|++++ |..|.|.+++.... ...++++
T Consensus 6 ~~l~~~~~~~~~~l~~isl~i~~G~---~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~i~~~ 82 (229)
T cd03254 6 ENVNFSYDEKKPVLKDINFSIKPGE---TVAIVGPTGAGKTTLINLLMRFYDPQKGQILIDGIDIRDISRKSLRSMIGVV 82 (229)
T ss_pred EEEEEecCCCCccccceEEEEcCCC---EEEEECCCCCCHHHHHHHHhcCcCCCCCEEEECCEeHHHcCHHHHhhhEEEe
Confidence 344555542 468999999999999 99999999999999999999998 78999999986432 2347899
Q ss_pred CCCCCCCchhhHHHHHHhhhcCc---cc-------ccc------------cccccccccccceeeecCCccEEEEeccee
Q 006117 112 FDDPRLTDYDTLLENIRGLKEGK---AV-------QVP------------IYDFKSSSRIGYRTLEVPSSRIVIIEGIYA 169 (660)
Q Consensus 112 fq~p~l~d~~tl~e~L~~L~~Gk---~I-------~~P------------iyD~s~~~rs~~~~~~v~~a~VVIVEGila 169 (660)
||++.+++. ++.+++....... .+ ... ..+......++++.+++..++.++-++.++
T Consensus 83 ~q~~~~~~~-tv~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~LS~G~~~rv~la~al~~~p~ll 161 (229)
T cd03254 83 LQDTFLFSG-TIMENIRLGRPNATDEEVIEAAKEAGAHDFIMKLPNGYDTVLGENGGNLSQGERQLLAIARAMLRDPKIL 161 (229)
T ss_pred cCCchhhhh-HHHHHHhccCCCCCHHHHHHHHHHhChHHHHHhCcccccCHhhcCCCcCCHHHHHHHHHHHHHhcCCCEE
Confidence 999887774 8888875432110 00 000 011123445566777888888999999999
Q ss_pred ecccccCCCCE
Q 006117 170 LSEKLRPLIDL 180 (660)
Q Consensus 170 L~deLr~llDl 180 (660)
+.||+...+|.
T Consensus 162 llDEP~~~LD~ 172 (229)
T cd03254 162 ILDEATSNIDT 172 (229)
T ss_pred EEeCccccCCH
Confidence 99999999997
No 236
>cd03252 ABCC_Hemolysin The ABC-transporter hemolysin B is a central component of the secretion machinery that translocates the toxin, hemolysin A, in a Sec-independent fashion across both membranes of E. coli. The hemolysin A (HlyA) transport machinery is composed of the ATP-binding cassette (ABC) transporter HlyB located in the inner membrane, hemolysin D (HlyD), also anchored in the inner membrane, and TolC, which resides in the outer membrane. HlyD apparently forms a continuous channel that bridges the entire periplasm, interacting with TolC and HlyB. This arrangement prevents the appearance of periplasmic intermediates of HlyA during substrate transport. Little is known about the molecular details of HlyA transport, but it is evident that ATP-hydrolysis by the ABC-transporter HlyB is a necessary source of energy.
Probab=99.28 E-value=3.7e-12 Score=129.12 Aligned_cols=127 Identities=19% Similarity=0.309 Sum_probs=97.5
Q ss_pred eEEEEecceeeccCCcceEEEEECCCCCcHHHHHHHHHHhC-CCceEEEecCcccc-------cccccccCCCCCCCchh
Q 006117 50 FIVIRACQLLAQKNHGIILVGVAGPSGAGKTVFTEKVLNFM-PSIAVITMDNYNDS-------SRIIDGNFDDPRLTDYD 121 (660)
Q Consensus 50 ~~vL~~Isl~i~~ge~~~IIGI~GpSGSGKSTLak~L~~lL-p~~g~I~lDg~~~~-------~~~i~~vfq~p~l~d~~ 121 (660)
..++++++|.+++|+ ++||+|+||||||||+++|++++ |..|.|.++|.... .+.++++||++.+++ .
T Consensus 15 ~~~l~~isl~i~~Ge---~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~~~i~~~~q~~~~~~-~ 90 (237)
T cd03252 15 PVILDNISLRIKPGE---VVGIVGRSGSGKSTLTKLIQRFYVPENGRVLVDGHDLALADPAWLRRQVGVVLQENVLFN-R 90 (237)
T ss_pred ccceeceEEEEcCCC---EEEEECCCCCCHHHHHHHHhcCcCCCCCEEEECCeehHhcCHHHHhhcEEEEcCCchhcc-c
Confidence 568999999999999 99999999999999999999998 78999999986432 134789999988775 5
Q ss_pred hHHHHHHhhhcCc---cc----c----------cc-----cccccccccccceeeecCCccEEEEecceeecccccCCCC
Q 006117 122 TLLENIRGLKEGK---AV----Q----------VP-----IYDFKSSSRIGYRTLEVPSSRIVIIEGIYALSEKLRPLID 179 (660)
Q Consensus 122 tl~e~L~~L~~Gk---~I----~----------~P-----iyD~s~~~rs~~~~~~v~~a~VVIVEGilaL~deLr~llD 179 (660)
++.+++.....+. .+ . .| ..+...+..++++.+++..++.++.++.+++.||+...+|
T Consensus 91 tv~~nl~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~LSgG~~qrv~laral~~~p~llllDEP~~~LD 170 (237)
T cd03252 91 SIRDNIALADPGMSMERVIEAAKLAGAHDFISELPEGYDTIVGEQGAGLSGGQRQRIAIARALIHNPRILIFDEATSALD 170 (237)
T ss_pred hHHHHhhccCCCCCHHHHHHHHHHcCcHHHHHhCcccccchhhcCCCcCCHHHHHHHHHHHHHhhCCCEEEEeCCcccCC
Confidence 8888875422110 00 0 00 0122334556677778888889999999999999999999
Q ss_pred E
Q 006117 180 L 180 (660)
Q Consensus 180 l 180 (660)
.
T Consensus 171 ~ 171 (237)
T cd03252 171 Y 171 (237)
T ss_pred H
Confidence 7
No 237
>COG4172 ABC-type uncharacterized transport system, duplicated ATPase component [General function prediction only]
Probab=99.28 E-value=4.9e-12 Score=136.35 Aligned_cols=191 Identities=17% Similarity=0.248 Sum_probs=138.7
Q ss_pred ceEEEEecceeeccCCcceEEEEECCCCCcHHHHHHHHHHhCCCceEEEecCccccc----------ccccccCCCCC--
Q 006117 49 FFIVIRACQLLAQKNHGIILVGVAGPSGAGKTVFTEKVLNFMPSIAVITMDNYNDSS----------RIIDGNFDDPR-- 116 (660)
Q Consensus 49 ~~~vL~~Isl~i~~ge~~~IIGI~GpSGSGKSTLak~L~~lLp~~g~I~lDg~~~~~----------~~i~~vfq~p~-- 116 (660)
.+.+++++||.+.+|+ .+||+|.||||||||..+|..+++..|.|.++|..... +.+..+||+|.
T Consensus 299 ~~~AVd~isl~L~~gq---TlGlVGESGSGKsTlG~allrL~~s~G~I~F~G~~i~~~~~~~mrplR~~mQvVFQDPygS 375 (534)
T COG4172 299 HLRAVDGISLTLRRGQ---TLGLVGESGSGKSTLGLALLRLIPSQGEIRFDGQDIDGLSRKEMRPLRRRMQVVFQDPYGS 375 (534)
T ss_pred heEEeccceeEecCCC---eEEEEecCCCCcchHHHHHHhhcCcCceEEECCccccccChhhhhhhhhhceEEEeCCCCC
Confidence 4579999999999999 99999999999999999999999777999999975432 45778999984
Q ss_pred CCchhhHHHHHHhhhc--C----------------c--ccccccccccccccccceeeecCCccEEEEecceeecccccC
Q 006117 117 LTDYDTLLENIRGLKE--G----------------K--AVQVPIYDFKSSSRIGYRTLEVPSSRIVIIEGIYALSEKLRP 176 (660)
Q Consensus 117 l~d~~tl~e~L~~L~~--G----------------k--~I~~PiyD~s~~~rs~~~~~~v~~a~VVIVEGilaL~deLr~ 176 (660)
+.+.+++.+.+..-.. . + .......+...|+.++++.++++.++.+|+++.+++.||+..
T Consensus 376 LsPRmtV~qII~EGL~vh~~~ls~~eR~~rv~~aL~EVGLDp~~r~RYPhEFSGGQRQRIAIARAliLkP~~i~LDEPTS 455 (534)
T COG4172 376 LSPRMTVGQIIEEGLRVHEPKLSAAERDQRVIEALEEVGLDPATRNRYPHEFSGGQRQRIAIARALILKPELILLDEPTS 455 (534)
T ss_pred CCcccCHHHHhhhhhhhcCCCCCHHHHHHHHHHHHHHcCCChhHhhcCCcccCcchhhHHHHHHHHhcCCcEEEecCCch
Confidence 6788888888764211 0 0 122235667788889999999999999999999999999999
Q ss_pred CCCEEEEEEcChhHHHHHHHHHHHHHhCCCHHHHHHHHHhccccchhhcccCCcCcCcEEEeCCCCCCCCCCCceEEecc
Q 006117 177 LIDLRVSVTGGVHFDLVKRVFRDIQRVGQEPEEIIHQISETVYPMYKAFIEPDLQTAHIKIINKFNPFTGFQNPTYILKS 256 (660)
Q Consensus 177 llDlkIfVdad~dirLiRRI~RDv~eRGrs~E~Vl~qy~~~v~P~~~~fIeP~k~~ADiII~N~~~p~~g~~n~v~iLKs 256 (660)
.+|..|- + .-+.+.|.++++ +|.+ =+.|.++....+-.++.|.++|.
T Consensus 456 ALD~SVQ--a-Qvv~LLr~LQ~k---~~Ls---------------------------YLFISHDL~VvrAl~~~viVm~~ 502 (534)
T COG4172 456 ALDRSVQ--A-QVLDLLRDLQQK---HGLS---------------------------YLFISHDLAVVRALCHRVIVMRD 502 (534)
T ss_pred HhhHHHH--H-HHHHHHHHHHHH---hCCe---------------------------EEEEeccHHHHHHhhceEEEEeC
Confidence 9997311 0 012233333322 2322 23444555555667777778888
Q ss_pred CCCccHHHHHHHhcccccc
Q 006117 257 TRPVTVDEIKAVMSKEHTE 275 (660)
Q Consensus 257 a~~v~~~~IravL~~~~~~ 275 (660)
++-+..+...++|......
T Consensus 503 GkiVE~G~~~~if~~P~~~ 521 (534)
T COG4172 503 GKIVEQGPTEAVFANPQHE 521 (534)
T ss_pred CEEeeeCCHHHHhcCCCcH
Confidence 8777767777777665443
No 238
>CHL00131 ycf16 sulfate ABC transporter protein; Validated
Probab=99.27 E-value=6.4e-12 Score=128.52 Aligned_cols=158 Identities=11% Similarity=0.084 Sum_probs=110.0
Q ss_pred cceeeeecCceEEEEecceeeccCCcceEEEEECCCCCcHHHHHHHHHHh--C-CCceEEEecCccccc------c--cc
Q 006117 40 EDTLSFEKGFFIVIRACQLLAQKNHGIILVGVAGPSGAGKTVFTEKVLNF--M-PSIAVITMDNYNDSS------R--II 108 (660)
Q Consensus 40 ~~~ls~~~g~~~vL~~Isl~i~~ge~~~IIGI~GpSGSGKSTLak~L~~l--L-p~~g~I~lDg~~~~~------~--~i 108 (660)
.+++++.++...++++++|.+.+|+ ++||+|+||||||||+++|+++ + |..|.|.++|..... . .+
T Consensus 10 ~~~l~~~~~~~~~l~~vs~~i~~Ge---~~~i~G~nGsGKSTLl~~i~Gl~~~~~~~G~i~~~g~~~~~~~~~~~~~~~~ 86 (252)
T CHL00131 10 IKNLHASVNENEILKGLNLSINKGE---IHAIMGPNGSGKSTLSKVIAGHPAYKILEGDILFKGESILDLEPEERAHLGI 86 (252)
T ss_pred EEeEEEEeCCEEeeecceeEEcCCc---EEEEECCCCCCHHHHHHHHcCCCcCcCCCceEEECCEEcccCChhhhheeeE
Confidence 3455555555679999999999999 9999999999999999999997 3 689999999864321 1 25
Q ss_pred cccCCCCCCCchhhHHHHHHhhhcC-----------------------cccccc--ccccccc-ccccceeeecCCccEE
Q 006117 109 DGNFDDPRLTDYDTLLENIRGLKEG-----------------------KAVQVP--IYDFKSS-SRIGYRTLEVPSSRIV 162 (660)
Q Consensus 109 ~~vfq~p~l~d~~tl~e~L~~L~~G-----------------------k~I~~P--iyD~s~~-~rs~~~~~~v~~a~VV 162 (660)
++++|++.+++..++.+++...... ..+..+ ..+...+ ..++++..++..+..+
T Consensus 87 ~~~~q~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~LSgG~~qrv~la~al 166 (252)
T CHL00131 87 FLAFQYPIEIPGVSNADFLRLAYNSKRKFQGLPELDPLEFLEIINEKLKLVGMDPSFLSRNVNEGFSGGEKKRNEILQMA 166 (252)
T ss_pred EEEeccccccccccHHHHHHHhhhhhhcccccccccHHHHHHHHHHHHHHcCCchhhhccccccCCCHHHHHHHHHHHHH
Confidence 6788988887766766665432100 000011 1222333 2566777788888899
Q ss_pred EEecceeecccccCCCCEEEEEEcChhHHHHHHHHHHHHHhCCCH
Q 006117 163 IIEGIYALSEKLRPLIDLRVSVTGGVHFDLVKRVFRDIQRVGQEP 207 (660)
Q Consensus 163 IVEGilaL~deLr~llDlkIfVdad~dirLiRRI~RDv~eRGrs~ 207 (660)
+.++.+++.||+...+|. ...+....+.+.+...|.+.
T Consensus 167 ~~~p~llllDEPt~~LD~-------~~~~~l~~~l~~~~~~g~ti 204 (252)
T CHL00131 167 LLDSELAILDETDSGLDI-------DALKIIAEGINKLMTSENSI 204 (252)
T ss_pred HcCCCEEEEcCCcccCCH-------HHHHHHHHHHHHHHhCCCEE
Confidence 999999999999999997 34444445555554445443
No 239
>PRK14253 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.27 E-value=7e-12 Score=128.16 Aligned_cols=136 Identities=17% Similarity=0.169 Sum_probs=102.4
Q ss_pred ceeeeecCceEEEEecceeeccCCcceEEEEECCCCCcHHHHHHHHHHhC-C-----CceEEEecCcccc--------cc
Q 006117 41 DTLSFEKGFFIVIRACQLLAQKNHGIILVGVAGPSGAGKTVFTEKVLNFM-P-----SIAVITMDNYNDS--------SR 106 (660)
Q Consensus 41 ~~ls~~~g~~~vL~~Isl~i~~ge~~~IIGI~GpSGSGKSTLak~L~~lL-p-----~~g~I~lDg~~~~--------~~ 106 (660)
+++++.++...++++++|.+++|+ ++||+|+||||||||+++|++++ | ..|.|.++|.... .+
T Consensus 7 ~~l~~~~~~~~~l~~vs~~i~~Ge---~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~v~~~g~~~~~~~~~~~~~~ 83 (249)
T PRK14253 7 ENLDLFYGENQALKSINLPIPARQ---VTALIGPSGCGKSTLLRCLNRMNDLIEGVKITGKLTMDGEDIYGNIDVADLRI 83 (249)
T ss_pred eccEEEECCeeeeecceEEecCCC---EEEEECCCCCCHHHHHHHHHhhcccccCCCCceEEEECCEEcccccchHHHHh
Confidence 455555566779999999999999 99999999999999999999997 3 4899999986432 13
Q ss_pred cccccCCCCCCCchhhHHHHHHhhhc--C---c-c-----------ccc-----ccccccccccccceeeecCCccEEEE
Q 006117 107 IIDGNFDDPRLTDYDTLLENIRGLKE--G---K-A-----------VQV-----PIYDFKSSSRIGYRTLEVPSSRIVII 164 (660)
Q Consensus 107 ~i~~vfq~p~l~d~~tl~e~L~~L~~--G---k-~-----------I~~-----PiyD~s~~~rs~~~~~~v~~a~VVIV 164 (660)
.++++||++.+++ .++.+++..... + . . +.. +..+...+..++++.+++..++.++.
T Consensus 84 ~i~~~~q~~~~~~-~tv~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~LS~G~~qrv~laral~~ 162 (249)
T PRK14253 84 KVGMVFQKPNPFP-MSIYENVAYGLRAQGIKDKKVLDEVVERSLRGAALWDEVKDRLKSHAFGLSGGQQQRLCIARTIAM 162 (249)
T ss_pred heeEEecCCCcCc-ccHHHHHHhHHHhcCCCchHHHHHHHHHHHHHcCCchhhhHHhhcCcccCCHHHHHHHHHHHHHHc
Confidence 4789999998887 788888753211 1 0 0 000 11223334456667778888888999
Q ss_pred ecceeecccccCCCCE
Q 006117 165 EGIYALSEKLRPLIDL 180 (660)
Q Consensus 165 EGilaL~deLr~llDl 180 (660)
++.+++.||+...+|.
T Consensus 163 ~p~llllDEP~~~LD~ 178 (249)
T PRK14253 163 EPDVILMDEPTSALDP 178 (249)
T ss_pred CCCEEEEeCCCccCCH
Confidence 9999999999999997
No 240
>PRK15134 microcin C ABC transporter ATP-binding protein YejF; Provisional
Probab=99.27 E-value=2.8e-12 Score=145.13 Aligned_cols=128 Identities=18% Similarity=0.218 Sum_probs=100.4
Q ss_pred eEEEEecceeeccCCcceEEEEECCCCCcHHHHHHHHHHhCCCceEEEecCcccc----------cccccccCCCC--CC
Q 006117 50 FIVIRACQLLAQKNHGIILVGVAGPSGAGKTVFTEKVLNFMPSIAVITMDNYNDS----------SRIIDGNFDDP--RL 117 (660)
Q Consensus 50 ~~vL~~Isl~i~~ge~~~IIGI~GpSGSGKSTLak~L~~lLp~~g~I~lDg~~~~----------~~~i~~vfq~p--~l 117 (660)
..+++++||.+++|+ ++||+|+||||||||+++|++++|..|.|.++|.... .+.++++||++ .+
T Consensus 299 ~~il~~isl~i~~Ge---~~~i~G~nGsGKSTLlk~l~Gl~~~~G~i~~~g~~i~~~~~~~~~~~~~~i~~v~q~~~~~l 375 (529)
T PRK15134 299 NVVVKNISFTLRPGE---TLGLVGESGSGKSTTGLALLRLINSQGEIWFDGQPLHNLNRRQLLPVRHRIQVVFQDPNSSL 375 (529)
T ss_pred ceeeecceeEEcCCC---EEEEECCCCCCHHHHHHHHhCcCCCCcEEEECCEEccccchhhHHHhhhceEEEEeCchhhc
Confidence 579999999999999 9999999999999999999999988999999986431 13478999997 36
Q ss_pred CchhhHHHHHHhh-h-cC-----c-----------ccccc--cccccccccccceeeecCCccEEEEecceeecccccCC
Q 006117 118 TDYDTLLENIRGL-K-EG-----K-----------AVQVP--IYDFKSSSRIGYRTLEVPSSRIVIIEGIYALSEKLRPL 177 (660)
Q Consensus 118 ~d~~tl~e~L~~L-~-~G-----k-----------~I~~P--iyD~s~~~rs~~~~~~v~~a~VVIVEGilaL~deLr~l 177 (660)
++..++.+++... . .+ . .+..+ ..+...+..++++.+++..+..++.++.+++.||+...
T Consensus 376 ~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgG~~qrv~la~al~~~p~llllDEPt~~ 455 (529)
T PRK15134 376 NPRLNVLQIIEEGLRVHQPTLSAAQREQQVIAVMEEVGLDPETRHRYPAEFSGGQRQRIAIARALILKPSLIILDEPTSS 455 (529)
T ss_pred CCcccHHHHHHHHHHhccccCChHHHHHHHHHHHHHcCCCHHHHhcCCccCCHHHHHHHHHHHHHhCCCCEEEeeCCccc
Confidence 7777888887541 1 10 0 01111 12334456677888889999999999999999999999
Q ss_pred CCE
Q 006117 178 IDL 180 (660)
Q Consensus 178 lDl 180 (660)
+|.
T Consensus 456 LD~ 458 (529)
T PRK15134 456 LDK 458 (529)
T ss_pred cCH
Confidence 997
No 241
>COG4559 ABC-type hemin transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=99.27 E-value=8.1e-12 Score=125.37 Aligned_cols=158 Identities=17% Similarity=0.209 Sum_probs=110.3
Q ss_pred cceeeeecCceEEEEecceeeccCCcceEEEEECCCCCcHHHHHHHHHHhC-CCceEEEecCccccc-------cccccc
Q 006117 40 EDTLSFEKGFFIVIRACQLLAQKNHGIILVGVAGPSGAGKTVFTEKVLNFM-PSIAVITMDNYNDSS-------RIIDGN 111 (660)
Q Consensus 40 ~~~ls~~~g~~~vL~~Isl~i~~ge~~~IIGI~GpSGSGKSTLak~L~~lL-p~~g~I~lDg~~~~~-------~~i~~v 111 (660)
.+++++....+.++++++|.+.+|+ +.+|+||||||||||++.|++.+ |+.|.+.+++..... +..+..
T Consensus 4 a~nls~~~~Gr~ll~~vsl~~~pGe---v~ailGPNGAGKSTlLk~LsGel~p~~G~v~~~g~~l~~~~~~~lA~~raVl 80 (259)
T COG4559 4 AENLSYSLAGRRLLDGVSLDLRPGE---VLAILGPNGAGKSTLLKALSGELSPDSGEVTLNGVPLNSWPPEELARHRAVL 80 (259)
T ss_pred eeeeEEEeecceeccCcceeccCCc---EEEEECCCCccHHHHHHHhhCccCCCCCeEeeCCcChhhCCHHHHHHHhhhc
Confidence 4667777788899999999999999 99999999999999999999999 899999999975432 345678
Q ss_pred CCCCCCCchhhHHHHHHhhhc----Ccc--------------cccccccc-cccccccceeeecCCccEE------EEec
Q 006117 112 FDDPRLTDYDTLLENIRGLKE----GKA--------------VQVPIYDF-KSSSRIGYRTLEVPSSRIV------IIEG 166 (660)
Q Consensus 112 fq~p~l~d~~tl~e~L~~L~~----Gk~--------------I~~PiyD~-s~~~rs~~~~~~v~~a~VV------IVEG 166 (660)
+|+..+-...++.|.+..-.. |.. +....|.- .-...++++.+++..++++ +-+|
T Consensus 81 pQ~s~laFpFtv~eVV~mGr~p~~~g~~~~e~~~i~~~ala~~d~~~la~R~y~~LSGGEqQRVqlARvLaQl~~~v~~~ 160 (259)
T COG4559 81 PQNSSLAFPFTVQEVVQMGRIPHRSGREPEEDERIAAQALAATDLSGLAGRDYRTLSGGEQQRVQLARVLAQLWPPVPSG 160 (259)
T ss_pred ccCcccccceEHHHHHHhcccccccCCCchhhHHHHHHHHHHcChhhhhccchhhcCchHHHHHHHHHHHHHccCCCCCC
Confidence 888776555688888865321 111 00000100 0112345555555444432 3345
Q ss_pred ceeecccccCCCCEEEEEEcChhHHHHHHHHHHHHHhCCCH
Q 006117 167 IYALSEKLRPLIDLRVSVTGGVHFDLVKRVFRDIQRVGQEP 207 (660)
Q Consensus 167 ilaL~deLr~llDlkIfVdad~dirLiRRI~RDv~eRGrs~ 207 (660)
-++|.||+...+|+ .+-.-.-|+.|+...+|-.+
T Consensus 161 r~L~LDEPtsaLDi-------~HQ~~tl~laR~la~~g~~V 194 (259)
T COG4559 161 RWLFLDEPTSALDI-------AHQHHTLRLARQLAREGGAV 194 (259)
T ss_pred ceEEecCCccccch-------HHHHHHHHHHHHHHhcCCcE
Confidence 68888999999998 45555667777777666443
No 242
>TIGR02982 heterocyst_DevA ABC exporter ATP-binding subunit, DevA family. Members of this protein family are found mostly in the Cyanobacteria, but also in the Planctomycetes. Cyanobacterial examples are involved in heterocyst formation, by which some fraction of members of the colony undergo a developmental change and become capable of nitrogen fixation. The DevBCA proteins are thought export of either heterocyst-specific glycolipids or an enzyme essential for formation of the laminated layer found in heterocysts.
Probab=99.27 E-value=7e-12 Score=125.98 Aligned_cols=128 Identities=19% Similarity=0.175 Sum_probs=98.7
Q ss_pred eEEEEecceeeccCCcceEEEEECCCCCcHHHHHHHHHHhC-CCceEEEecCcccc----------cccccccCCCCCCC
Q 006117 50 FIVIRACQLLAQKNHGIILVGVAGPSGAGKTVFTEKVLNFM-PSIAVITMDNYNDS----------SRIIDGNFDDPRLT 118 (660)
Q Consensus 50 ~~vL~~Isl~i~~ge~~~IIGI~GpSGSGKSTLak~L~~lL-p~~g~I~lDg~~~~----------~~~i~~vfq~p~l~ 118 (660)
..+++++||.+++|+ +++|+|+||||||||+++|++.+ |..|.|.++|.... .+.++++||++.++
T Consensus 18 ~~il~~vs~~i~~G~---~~~I~G~nGsGKStLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~~~i~~~~q~~~~~ 94 (220)
T TIGR02982 18 KQVLFDINLEINPGE---IVILTGPSGSGKTTLLTLIGGLRSVQEGSLKVLGQELYGASEKELVQLRRNIGYIFQAHNLL 94 (220)
T ss_pred eeEEeeeEEEEcCCC---EEEEECCCCCCHHHHHHHHhCCCCCCCeEEEECCEEhHhcCHhHHHHHHhheEEEcCChhhc
Confidence 679999999999999 99999999999999999999998 78999999986432 13578899999988
Q ss_pred chhhHHHHHHhhhc-Ccc----------------ccc-ccccccccccccceeeecCCccEEEEecceeecccccCCCCE
Q 006117 119 DYDTLLENIRGLKE-GKA----------------VQV-PIYDFKSSSRIGYRTLEVPSSRIVIIEGIYALSEKLRPLIDL 180 (660)
Q Consensus 119 d~~tl~e~L~~L~~-Gk~----------------I~~-PiyD~s~~~rs~~~~~~v~~a~VVIVEGilaL~deLr~llDl 180 (660)
+..++.+++..... ... +.. +..+......++++.+++..++.++.++.+++.||+...+|.
T Consensus 95 ~~~t~~~n~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~lS~G~~qrv~laral~~~p~illlDEP~~~LD~ 174 (220)
T TIGR02982 95 GFLTARQNVQMALELQPNLSYQEARERARAMLEAVGLGDHLDYYPHNLSGGQKQRVAIARALVHRPKLVLADEPTAALDS 174 (220)
T ss_pred CCCCHHHHHHHHHHhccCCCHHHHHHHHHHHHHHcCChhhhhcChhhCCHHHHHHHHHHHHHhcCCCEEEEeCCCCcCCH
Confidence 87888888764321 000 000 112222334455677777788888999999999999999997
No 243
>PRK14732 coaE dephospho-CoA kinase; Provisional
Probab=99.27 E-value=6e-12 Score=125.70 Aligned_cols=160 Identities=19% Similarity=0.248 Sum_probs=105.3
Q ss_pred EEEEECCCCCcHHHHHHHHHHhCCCceEEEecCccc----c-c-------cccc-ccCCCCCCCchhhHHHHHHh----h
Q 006117 68 LVGVAGPSGAGKTVFTEKVLNFMPSIAVITMDNYND----S-S-------RIID-GNFDDPRLTDYDTLLENIRG----L 130 (660)
Q Consensus 68 IIGI~GpSGSGKSTLak~L~~lLp~~g~I~lDg~~~----~-~-------~~i~-~vfq~p~l~d~~tl~e~L~~----L 130 (660)
+|||+|++||||||+++.+.+. +...|..|.... . . ...+ -+++..+..|...+.+.+.. +
T Consensus 1 ~i~itG~~gsGKst~~~~l~~~--g~~~i~~D~i~~~~~~~~~~~~~~i~~~fG~~i~~~~g~idr~~L~~~vF~~~~~~ 78 (196)
T PRK14732 1 LIGITGMIGGGKSTALKILEEL--GAFGISADRLAKRYTEPDSPILSELVSLLGPSILDENGKPNRKKISEIVFNDEEKL 78 (196)
T ss_pred CEEEECCCCccHHHHHHHHHHC--CCEEEecchHHHHHHhcCcHHHHHHHHHhChhhcCCCCccCHHHHHHHHhCCHHHH
Confidence 4899999999999999999874 455677765411 0 0 0011 12233344555555555432 2
Q ss_pred hcCcccccccccccccccccceeeecCCccEEEEecceeecccccCCCCEEEEEEcChhHHHHHHHHHHHHHhCCCHHHH
Q 006117 131 KEGKAVQVPIYDFKSSSRIGYRTLEVPSSRIVIIEGIYALSEKLRPLIDLRVSVTGGVHFDLVKRVFRDIQRVGQEPEEI 210 (660)
Q Consensus 131 ~~Gk~I~~PiyD~s~~~rs~~~~~~v~~a~VVIVEGilaL~deLr~llDlkIfVdad~dirLiRRI~RDv~eRGrs~E~V 210 (660)
..-+.+.+|........... ......++++|.++++...+...||..|||++|.++++.|.+.| .|.+.+++
T Consensus 79 ~~L~~i~hP~v~~~~~~~~~----~~~~~~~vi~e~pLL~E~~~~~~~D~vi~V~a~~e~r~~RL~~R----~g~s~e~a 150 (196)
T PRK14732 79 KALNELIHPLVRKDFQKILQ----TTAEGKLVIWEVPLLFETDAYTLCDATVTVDSDPEESILRTISR----DGMKKEDV 150 (196)
T ss_pred HHHHHHhhHHHHHHHHHHHH----HHhcCCcEEEEeeeeeEcCchhhCCEEEEEECCHHHHHHHHHHc----CCCCHHHH
Confidence 22244556644333222211 01123688999999999888889999999999999877766666 48899998
Q ss_pred HHHHHhccccchhhcccCCcCcCcEEEeCCCCC
Q 006117 211 IHQISETVYPMYKAFIEPDLQTAHIKIINKFNP 243 (660)
Q Consensus 211 l~qy~~~v~P~~~~fIeP~k~~ADiII~N~~~p 243 (660)
..++... + .+++.++.||+||.|+++.
T Consensus 151 ~~ri~~Q-~-----~~~~k~~~aD~vI~N~~~~ 177 (196)
T PRK14732 151 LARIASQ-L-----PITEKLKRADYIVRNDGNR 177 (196)
T ss_pred HHHHHHc-C-----CHHHHHHhCCEEEECCCCH
Confidence 8888543 3 3456678999999998755
No 244
>PRK14236 phosphate transporter ATP-binding protein; Provisional
Probab=99.27 E-value=1.2e-11 Score=128.72 Aligned_cols=137 Identities=19% Similarity=0.146 Sum_probs=101.4
Q ss_pred cceeeeecCceEEEEecceeeccCCcceEEEEECCCCCcHHHHHHHHHHhCC------CceEEEecCcccc---------
Q 006117 40 EDTLSFEKGFFIVIRACQLLAQKNHGIILVGVAGPSGAGKTVFTEKVLNFMP------SIAVITMDNYNDS--------- 104 (660)
Q Consensus 40 ~~~ls~~~g~~~vL~~Isl~i~~ge~~~IIGI~GpSGSGKSTLak~L~~lLp------~~g~I~lDg~~~~--------- 104 (660)
.+++++.++...++++++|.+++|+ ++||+|+||||||||+++|+++++ ..|.|.++|....
T Consensus 28 ~~nl~~~~~~~~il~~vs~~i~~Ge---~~~I~G~nGsGKSTLl~~laGl~~~~~~~~~~G~i~i~g~~i~~~~~~~~~~ 104 (272)
T PRK14236 28 VRNLNLFYGDKQALFDISMRIPKNR---VTAFIGPSGCGKSTLLRCFNRMNDLVDNCRIEGEIRLDGQNIYDKKVDVAEL 104 (272)
T ss_pred EEEEEEEECCeeEeeeEEEEEcCCC---EEEEECCCCCCHHHHHHHHHhcCCCccCCCCceEEEECCEECcccccCHHHH
Confidence 3455555556679999999999999 999999999999999999999973 6899999986432
Q ss_pred cccccccCCCCCCCchhhHHHHHHhhh--cCc---c-----cc-------cc-----cccccccccccceeeecCCccEE
Q 006117 105 SRIIDGNFDDPRLTDYDTLLENIRGLK--EGK---A-----VQ-------VP-----IYDFKSSSRIGYRTLEVPSSRIV 162 (660)
Q Consensus 105 ~~~i~~vfq~p~l~d~~tl~e~L~~L~--~Gk---~-----I~-------~P-----iyD~s~~~rs~~~~~~v~~a~VV 162 (660)
...+++++|++.+++. ++.+++.... .+. . +. .. ..+......++++.+++..++.+
T Consensus 105 ~~~i~~v~q~~~l~~~-tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~LS~Gq~qrv~laral 183 (272)
T PRK14236 105 RRRVGMVFQRPNPFPK-SIYENVVYGLRLQGINNRRVLDEAVERSLRGAALWDEVKDRLHENAFGLSGGQQQRLVIARAI 183 (272)
T ss_pred hccEEEEecCCccCcc-cHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHcCCChhHHHHhhCCcccCCHHHHHHHHHHHHH
Confidence 1357899999988875 8888885321 110 0 00 00 11222334455677778888888
Q ss_pred EEecceeecccccCCCCE
Q 006117 163 IIEGIYALSEKLRPLIDL 180 (660)
Q Consensus 163 IVEGilaL~deLr~llDl 180 (660)
+.++.+++.||+...+|.
T Consensus 184 ~~~p~lllLDEPt~gLD~ 201 (272)
T PRK14236 184 AIEPEVLLLDEPTSALDP 201 (272)
T ss_pred HCCCCEEEEeCCcccCCH
Confidence 889999999999999996
No 245
>KOG0058 consensus Peptide exporter, ABC superfamily [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.27 E-value=1.9e-12 Score=147.67 Aligned_cols=204 Identities=19% Similarity=0.236 Sum_probs=139.9
Q ss_pred CCCCCCccCccccchhhhhcccCCCcee-e--eeccceeeeecC---ceEEEEecceeeccCCcceEEEEECCCCCcHHH
Q 006117 8 GADSPRRRPGLLRDQVQLVKKKDSDRYE-I--VPIEDTLSFEKG---FFIVIRACQLLAQKNHGIILVGVAGPSGAGKTV 81 (660)
Q Consensus 8 ~~~S~~r~~~ll~~~~~l~~~~~~~~~e-i--~~~~~~ls~~~g---~~~vL~~Isl~i~~ge~~~IIGI~GpSGSGKST 81 (660)
|+..-+|+=++++.+|.+... +..... + ...=++++|.|. ...++++++|.+++|+ +++|+||||+||||
T Consensus 434 gvGAs~rvFel~dr~P~i~~~-G~~~p~~~~G~IeF~~VsFaYP~Rp~~~Vlk~lsfti~pGe---~vALVGPSGsGKST 509 (716)
T KOG0058|consen 434 GVGASERVFELMDRKPRIPLT-GTLAPDHLQGVIEFEDVSFAYPTRPDVPVLKNLSFTIRPGE---VVALVGPSGSGKST 509 (716)
T ss_pred hcchHHHHHHHhccCCCCCCC-CccccccccceEEEEEeeeecCCCCCchhhcCceeeeCCCC---EEEEECCCCCCHHH
Confidence 344456666777777777665 321110 1 112234444443 4479999999999999 99999999999999
Q ss_pred HHHHHHHhC-CCceEEEecCccccc-------ccccccCCCCCCCchhhHHHHHHhhhcCc----------------cc-
Q 006117 82 FTEKVLNFM-PSIAVITMDNYNDSS-------RIIDGNFDDPRLTDYDTLLENIRGLKEGK----------------AV- 136 (660)
Q Consensus 82 Lak~L~~lL-p~~g~I~lDg~~~~~-------~~i~~vfq~p~l~d~~tl~e~L~~L~~Gk----------------~I- 136 (660)
+++.|..++ |..|.|.+||.+... +.++++-|+|.+|. -++.||+..-...- .|
T Consensus 510 iasLL~rfY~PtsG~IllDG~~i~~~~~~~lr~~Ig~V~QEPvLFs-~sI~eNI~YG~~~~t~e~i~~AAk~ANah~FI~ 588 (716)
T KOG0058|consen 510 IASLLLRFYDPTSGRILLDGVPISDINHKYLRRKIGLVGQEPVLFS-GSIRENIAYGLDNATDEEIEAAAKMANAHEFIT 588 (716)
T ss_pred HHHHHHHhcCCCCCeEEECCeehhhcCHHHHHHHeeeeeccceeec-ccHHHHHhcCCCCCCHHHHHHHHHHhChHHHHH
Confidence 999999998 999999999985432 56899999999987 57888886433210 01
Q ss_pred ccc-cccccccc----cccceeeecCCccEEEEecceeecccccCCCCEEEEEEcChhHHHHHHHHHHHHHhCCCHHHHH
Q 006117 137 QVP-IYDFKSSS----RIGYRTLEVPSSRIVIIEGIYALSEKLRPLIDLRVSVTGGVHFDLVKRVFRDIQRVGQEPEEII 211 (660)
Q Consensus 137 ~~P-iyD~s~~~----rs~~~~~~v~~a~VVIVEGilaL~deLr~llDlkIfVdad~dirLiRRI~RDv~eRGrs~E~Vl 211 (660)
..| -|+-..++ .+++|+++++.++.++-++..++.||-...+|- +...+++.-..... .++|+--|-
T Consensus 589 ~~p~gY~T~VGEkG~qLSGGQKQRIAIARALlr~P~VLILDEATSALDa-------eSE~lVq~aL~~~~-~~rTVlvIA 660 (716)
T KOG0058|consen 589 NFPDGYNTVVGEKGSQLSGGQKQRIAIARALLRNPRVLILDEATSALDA-------ESEYLVQEALDRLM-QGRTVLVIA 660 (716)
T ss_pred hCccccccccCCccccccchHHHHHHHHHHHhcCCCEEEEechhhhcch-------hhHHHHHHHHHHhh-cCCeEEEEe
Confidence 112 35544444 467899999999999999999999999998886 34444444332222 245654444
Q ss_pred HHHHhccccchhhcccCCcCcCcEEE
Q 006117 212 HQISETVYPMYKAFIEPDLQTAHIKI 237 (660)
Q Consensus 212 ~qy~~~v~P~~~~fIeP~k~~ADiII 237 (660)
|+. .+.+.||.|+
T Consensus 661 HRL-------------STV~~Ad~Iv 673 (716)
T KOG0058|consen 661 HRL-------------STVRHADQIV 673 (716)
T ss_pred hhh-------------hHhhhccEEE
Confidence 444 2446677665
No 246
>PRK14251 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.27 E-value=8.1e-12 Score=127.84 Aligned_cols=137 Identities=16% Similarity=0.211 Sum_probs=103.5
Q ss_pred cceeeeecCceEEEEecceeeccCCcceEEEEECCCCCcHHHHHHHHHHhCC------CceEEEecCcccc---------
Q 006117 40 EDTLSFEKGFFIVIRACQLLAQKNHGIILVGVAGPSGAGKTVFTEKVLNFMP------SIAVITMDNYNDS--------- 104 (660)
Q Consensus 40 ~~~ls~~~g~~~vL~~Isl~i~~ge~~~IIGI~GpSGSGKSTLak~L~~lLp------~~g~I~lDg~~~~--------- 104 (660)
.+++++.++...++++++|.+.+|+ +++|+|+||||||||+++|+++++ ..|.|.++|....
T Consensus 7 ~~~l~~~~~~~~~l~~~sl~i~~Ge---~~~i~G~nGsGKSTLl~~l~Gl~~~~p~~~~~G~v~i~g~~~~~~~~~~~~~ 83 (251)
T PRK14251 7 AKDVHLSYGNYEALHGISLDFEEKE---LTALIGPSGCGKSTFLRCLNRMNDDIENIKITGEIKFEGQNIYGSKMDLVEL 83 (251)
T ss_pred EEeeEEEECCeeeeeeeeEEEcCCC---EEEEECCCCCCHHHHHHHHhhccccccCCCcceEEEECCEEcccccchHHHh
Confidence 4566666677789999999999999 999999999999999999999973 6899999997431
Q ss_pred cccccccCCCCCCCchhhHHHHHHhhhc--C----c----cc-------cc-----ccccccccccccceeeecCCccEE
Q 006117 105 SRIIDGNFDDPRLTDYDTLLENIRGLKE--G----K----AV-------QV-----PIYDFKSSSRIGYRTLEVPSSRIV 162 (660)
Q Consensus 105 ~~~i~~vfq~p~l~d~~tl~e~L~~L~~--G----k----~I-------~~-----PiyD~s~~~rs~~~~~~v~~a~VV 162 (660)
.+.+++++|++.+++ .++.+++..... + . .+ .. ...+......++++.+++..++.+
T Consensus 84 ~~~i~~~~q~~~~~~-~tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~LS~Gq~qr~~laral 162 (251)
T PRK14251 84 RKEVGMVFQQPTPFP-FSVYDNVAYGLKIAGVKDKELIDQRVEESLKQAAIWKETKDNLDRNAQAFSGGQQQRICIARAL 162 (251)
T ss_pred hccEEEEecCCccCC-CcHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHcCCCcchHHHhccChhhCCHHHHHHHHHHHHH
Confidence 134788999998886 688888863211 0 0 00 00 011223344556677778888888
Q ss_pred EEecceeecccccCCCCE
Q 006117 163 IIEGIYALSEKLRPLIDL 180 (660)
Q Consensus 163 IVEGilaL~deLr~llDl 180 (660)
+.++.+++.||+...+|.
T Consensus 163 ~~~p~llllDEP~~~LD~ 180 (251)
T PRK14251 163 AVRPKVVLLDEPTSALDP 180 (251)
T ss_pred hcCCCEEEecCCCccCCH
Confidence 999999999999999997
No 247
>PRK10771 thiQ thiamine transporter ATP-binding subunit; Provisional
Probab=99.27 E-value=5.9e-12 Score=127.53 Aligned_cols=135 Identities=19% Similarity=0.254 Sum_probs=100.3
Q ss_pred ceeeeecCceEEEEecceeeccCCcceEEEEECCCCCcHHHHHHHHHHhC-CCceEEEecCcccc-----cccccccCCC
Q 006117 41 DTLSFEKGFFIVIRACQLLAQKNHGIILVGVAGPSGAGKTVFTEKVLNFM-PSIAVITMDNYNDS-----SRIIDGNFDD 114 (660)
Q Consensus 41 ~~ls~~~g~~~vL~~Isl~i~~ge~~~IIGI~GpSGSGKSTLak~L~~lL-p~~g~I~lDg~~~~-----~~~i~~vfq~ 114 (660)
+++++.++... .+++|.+.+|+ ++||+|+||||||||+++|++++ |..|.|.++|.... .+.++++||+
T Consensus 5 ~~l~~~~~~~~--~~is~~i~~Ge---~~~l~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~i~~~~q~ 79 (232)
T PRK10771 5 TDITWLYHHLP--MRFDLTVERGE---RVAILGPSGAGKSTLLNLIAGFLTPASGSLTLNGQDHTTTPPSRRPVSMLFQE 79 (232)
T ss_pred EEEEEEECCcc--ceeEEEEcCCC---EEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCeecCcCChhhccEEEEecc
Confidence 33444444322 38999999999 99999999999999999999998 78999999987432 2457899999
Q ss_pred CCCCchhhHHHHHHhhh-cC---c------------cccc-ccccccccccccceeeecCCccEEEEecceeecccccCC
Q 006117 115 PRLTDYDTLLENIRGLK-EG---K------------AVQV-PIYDFKSSSRIGYRTLEVPSSRIVIIEGIYALSEKLRPL 177 (660)
Q Consensus 115 p~l~d~~tl~e~L~~L~-~G---k------------~I~~-PiyD~s~~~rs~~~~~~v~~a~VVIVEGilaL~deLr~l 177 (660)
+.+++..++.+++.... .+ . .+.. +..+...+..++++.+++..++.++.++.+++.||+...
T Consensus 80 ~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~laral~~~p~lllLDEP~~g 159 (232)
T PRK10771 80 NNLFSHLTVAQNIGLGLNPGLKLNAAQREKLHAIARQMGIEDLLARLPGQLSGGQRQRVALARCLVREQPILLLDEPFSA 159 (232)
T ss_pred cccccCCcHHHHHhcccccccCCCHHHHHHHHHHHHHcCcHHHHhCCcccCCHHHHHHHHHHHHHhcCCCEEEEeCCccc
Confidence 99888889999885321 11 0 0000 112333445566777778888889999999999999999
Q ss_pred CCE
Q 006117 178 IDL 180 (660)
Q Consensus 178 lDl 180 (660)
+|.
T Consensus 160 LD~ 162 (232)
T PRK10771 160 LDP 162 (232)
T ss_pred CCH
Confidence 997
No 248
>TIGR01277 thiQ thiamine ABC transporter, ATP-binding protein. This model describes the energy-transducing ATPase subunit ThiQ of the ThiBPQ thiamine (and thiamine pyrophosphate) ABC transporter in several Proteobacteria. This protein is found so far only in Proteobacteria, and is found in complete genomes only if the ThiB and ThiP subunits are also found.
Probab=99.26 E-value=7.9e-12 Score=125.03 Aligned_cols=126 Identities=21% Similarity=0.267 Sum_probs=97.2
Q ss_pred EEEecceeeccCCcceEEEEECCCCCcHHHHHHHHHHhC-CCceEEEecCcccc-----cccccccCCCCCCCchhhHHH
Q 006117 52 VIRACQLLAQKNHGIILVGVAGPSGAGKTVFTEKVLNFM-PSIAVITMDNYNDS-----SRIIDGNFDDPRLTDYDTLLE 125 (660)
Q Consensus 52 vL~~Isl~i~~ge~~~IIGI~GpSGSGKSTLak~L~~lL-p~~g~I~lDg~~~~-----~~~i~~vfq~p~l~d~~tl~e 125 (660)
++++++|.+.+|+ ++||+|+||||||||+++|++++ |..|.|.++|.... .+.+++++|++.+++..++.+
T Consensus 13 ~~~~~s~~i~~Ge---~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~i~~v~q~~~~~~~~t~~e 89 (213)
T TIGR01277 13 LPMEFDLNVADGE---IVAIMGPSGAGKSTLLNLIAGFIEPASGSIKVNDQSHTGLAPYQRPVSMLFQENNLFAHLTVRQ 89 (213)
T ss_pred cceeeEEEEeCCc---EEEEECCCCCCHHHHHHHHhcCCCCCCcEEEECCEEcccCChhccceEEEeccCccCCCCcHHH
Confidence 4679999999999 99999999999999999999998 78999999987532 245789999999988889999
Q ss_pred HHHhh-hcC--------cc-------ccc-ccccccccccccceeeecCCccEEEEecceeecccccCCCCE
Q 006117 126 NIRGL-KEG--------KA-------VQV-PIYDFKSSSRIGYRTLEVPSSRIVIIEGIYALSEKLRPLIDL 180 (660)
Q Consensus 126 ~L~~L-~~G--------k~-------I~~-PiyD~s~~~rs~~~~~~v~~a~VVIVEGilaL~deLr~llDl 180 (660)
++... ... .. ... ...+...+..++++.+++..++.++.++.+++.||+...+|.
T Consensus 90 n~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrl~laral~~~p~llllDEPt~~LD~ 161 (213)
T TIGR01277 90 NIGLGLHPGLKLNAEQQEKVVDAAQQVGIADYLDRLPEQLSGGQRQRVALARCLVRPNPILLLDEPFSALDP 161 (213)
T ss_pred HHHhHhhccCCccHHHHHHHHHHHHHcCcHHHhhCCcccCCHHHHHHHHHHHHHhcCCCEEEEcCCCccCCH
Confidence 88532 110 00 001 112223344556677778888888889999999999999997
No 249
>PRK14237 phosphate transporter ATP-binding protein; Provisional
Probab=99.26 E-value=9.4e-12 Score=129.08 Aligned_cols=138 Identities=17% Similarity=0.194 Sum_probs=103.6
Q ss_pred ccceeeeecCceEEEEecceeeccCCcceEEEEECCCCCcHHHHHHHHHHhC-C-----CceEEEecCcccc--------
Q 006117 39 IEDTLSFEKGFFIVIRACQLLAQKNHGIILVGVAGPSGAGKTVFTEKVLNFM-P-----SIAVITMDNYNDS-------- 104 (660)
Q Consensus 39 ~~~~ls~~~g~~~vL~~Isl~i~~ge~~~IIGI~GpSGSGKSTLak~L~~lL-p-----~~g~I~lDg~~~~-------- 104 (660)
..+++++.++...++++++|.+.+|+ ++||+|+||||||||+++|++++ | ..|.|.+||....
T Consensus 22 ~~~nl~~~~~~~~il~~vsl~i~~Ge---~~~I~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~i~~~g~~~~~~~~~~~~ 98 (267)
T PRK14237 22 STKDLHVYYGKKEAIKGIDMQFEKNK---ITALIGPSGSGKSTYLRSLNRMNDTIDIARVTGQILYRGIDINRKEINVYE 98 (267)
T ss_pred EEeeEEEEECCeeeEeeeEEEEcCCC---EEEEECCCCCCHHHHHHHHHhccCccCCCCcceEEEECCEEcccccCChHH
Confidence 34555566566789999999999999 99999999999999999999997 2 6899999987532
Q ss_pred -cccccccCCCCCCCchhhHHHHHHhhh-c-Cc----ccc-----------c-----ccccccccccccceeeecCCccE
Q 006117 105 -SRIIDGNFDDPRLTDYDTLLENIRGLK-E-GK----AVQ-----------V-----PIYDFKSSSRIGYRTLEVPSSRI 161 (660)
Q Consensus 105 -~~~i~~vfq~p~l~d~~tl~e~L~~L~-~-Gk----~I~-----------~-----PiyD~s~~~rs~~~~~~v~~a~V 161 (660)
.+.++++||++.+++ .++.+++.... . +. ... . ...+...+..++++.+++..++.
T Consensus 99 ~~~~i~~v~q~~~~~~-~tv~eni~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~i~~~~~~~~~~LS~G~~qrl~lara 177 (267)
T PRK14237 99 MRKHIGMVFQRPNPFA-KSIYENITFALERAGVKDKKVLDEIVETSLKQAALWDQVKDDLHKSALTLSGGQQQRLCIARA 177 (267)
T ss_pred HhcceEEEecCCcccc-ccHHHHHHhHHHhcCCCCHHHHHHHHHHHHHHcCCCchhhhhhcCCcccCCHHHHHHHHHHHH
Confidence 234789999998887 58899886421 1 10 000 0 01222334455667777888888
Q ss_pred EEEecceeecccccCCCCE
Q 006117 162 VIIEGIYALSEKLRPLIDL 180 (660)
Q Consensus 162 VIVEGilaL~deLr~llDl 180 (660)
++..+.+++.||+...+|.
T Consensus 178 l~~~p~lllLDEPt~~LD~ 196 (267)
T PRK14237 178 IAVKPDILLMDEPASALDP 196 (267)
T ss_pred HhcCCCEEEEeCCcccCCH
Confidence 8999999999999999996
No 250
>PRK15112 antimicrobial peptide ABC system ATP-binding protein SapF; Provisional
Probab=99.26 E-value=6e-12 Score=130.53 Aligned_cols=128 Identities=13% Similarity=0.228 Sum_probs=94.4
Q ss_pred eEEEEecceeeccCCcceEEEEECCCCCcHHHHHHHHHHhC-CCceEEEecCcccc-------cccccccCCCCC--CCc
Q 006117 50 FIVIRACQLLAQKNHGIILVGVAGPSGAGKTVFTEKVLNFM-PSIAVITMDNYNDS-------SRIIDGNFDDPR--LTD 119 (660)
Q Consensus 50 ~~vL~~Isl~i~~ge~~~IIGI~GpSGSGKSTLak~L~~lL-p~~g~I~lDg~~~~-------~~~i~~vfq~p~--l~d 119 (660)
..++++++|.+++|+ +++|+|+||||||||+++|++++ |..|.|.++|.... .+.++++||++. +++
T Consensus 26 ~~~l~~vsl~i~~Ge---~~~i~G~NGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~i~~v~q~~~~~~~~ 102 (267)
T PRK15112 26 VEAVKPLSFTLREGQ---TLAIIGENGSGKSTLAKMLAGMIEPTSGELLIDDHPLHFGDYSYRSQRIRMIFQDPSTSLNP 102 (267)
T ss_pred cceeeeeeEEecCCC---EEEEEcCCCCCHHHHHHHHhCCCCCCCCEEEECCEECCCCchhhHhccEEEEecCchhhcCc
Confidence 469999999999999 99999999999999999999998 78999999986432 134788899874 445
Q ss_pred hhhHHHHHHhhh-c--C--------------ccccc-c-cccccccccccceeeecCCccEEEEecceeecccccCCCCE
Q 006117 120 YDTLLENIRGLK-E--G--------------KAVQV-P-IYDFKSSSRIGYRTLEVPSSRIVIIEGIYALSEKLRPLIDL 180 (660)
Q Consensus 120 ~~tl~e~L~~L~-~--G--------------k~I~~-P-iyD~s~~~rs~~~~~~v~~a~VVIVEGilaL~deLr~llDl 180 (660)
..++.+++.... . + +.+.. + ..+......++++.+++..+..++.++.+++.||+...+|.
T Consensus 103 ~~tv~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LS~G~~qrv~laral~~~p~lllLDEPt~~LD~ 182 (267)
T PRK15112 103 RQRISQILDFPLRLNTDLEPEQREKQIIETLRQVGLLPDHASYYPHMLAPGQKQRLGLARALILRPKVIIADEALASLDM 182 (267)
T ss_pred chhHHHHHHHHHHhccCCCHHHHHHHHHHHHHHcCCChHHHhcCchhcCHHHHHHHHHHHHHHhCCCEEEEcCCcccCCH
Confidence 556665553210 0 0 00111 1 11222344566777788888889999999999999999996
No 251
>cd03267 ABC_NatA_like Similar in sequence to NatA, this is the ATPase component of a bacterial ABC-type Na+ transport system called NatAB, which catalyzes ATP-dependent electrogenic Na+ extrusion without mechanically coupled to proton or K+ uptake. NatB possess six putative membrane spanning regions at its C-terminus. In B. subtilis, NatAB is inducible by agents such as ethanol and protonophores, which lower the protonmotive force across the membrane. The closest sequence similarity to NatA is exhibited by DrrA of the two-component daunomycin- and doxorubicin-efflux system. Hence, the functional NatAB is presumably assembled with two copies of the single ATP-binding protein and the single intergral membrane protein.
Probab=99.26 E-value=6.5e-12 Score=127.92 Aligned_cols=133 Identities=14% Similarity=0.143 Sum_probs=99.0
Q ss_pred eecCceEEEEecceeeccCCcceEEEEECCCCCcHHHHHHHHHHhC-CCceEEEecCcccc------cccccccC-CCCC
Q 006117 45 FEKGFFIVIRACQLLAQKNHGIILVGVAGPSGAGKTVFTEKVLNFM-PSIAVITMDNYNDS------SRIIDGNF-DDPR 116 (660)
Q Consensus 45 ~~~g~~~vL~~Isl~i~~ge~~~IIGI~GpSGSGKSTLak~L~~lL-p~~g~I~lDg~~~~------~~~i~~vf-q~p~ 116 (660)
..++...++++++|.+++|+ +++|+|+||||||||+++|++++ |..|.|.+++.... .+.+++++ |++.
T Consensus 29 ~~~~~~~il~~vs~~i~~Ge---~~~i~G~NGsGKSTLl~~i~Gl~~p~~G~i~~~g~~~~~~~~~~~~~i~~~~~~~~~ 105 (236)
T cd03267 29 RKYREVEALKGISFTIEKGE---IVGFIGPNGAGKTTTLKILSGLLQPTSGEVRVAGLVPWKRRKKFLRRIGVVFGQKTQ 105 (236)
T ss_pred cccCCeeeeeceeEEEcCCC---EEEEECCCCCCHHHHHHHHhCCcCCCceEEEECCEEccccchhhcccEEEEcCCccc
Confidence 44566789999999999999 99999999999999999999998 78999999986421 13467777 5566
Q ss_pred CCchhhHHHHHHhhhc--C---cc-----------ccc-ccccccccccccceeeecCCccEEEEecceeecccccCCCC
Q 006117 117 LTDYDTLLENIRGLKE--G---KA-----------VQV-PIYDFKSSSRIGYRTLEVPSSRIVIIEGIYALSEKLRPLID 179 (660)
Q Consensus 117 l~d~~tl~e~L~~L~~--G---k~-----------I~~-PiyD~s~~~rs~~~~~~v~~a~VVIVEGilaL~deLr~llD 179 (660)
+++..++.+++..... + .. ... +..+......++++..++..+..++.++.+++.||+...+|
T Consensus 106 ~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~LS~G~~qrl~la~al~~~p~llllDEPt~~LD 185 (236)
T cd03267 106 LWWDLPVIDSFYLLAAIYDLPPARFKKRLDELSELLDLEELLDTPVRQLSLGQRMRAEIAAALLHEPEILFLDEPTIGLD 185 (236)
T ss_pred cCCCCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCChhHhcCChhhCCHHHHHHHHHHHHHhcCCCEEEEcCCCCCCC
Confidence 7777778887643221 1 00 001 11223334455667777888888999999999999999999
Q ss_pred E
Q 006117 180 L 180 (660)
Q Consensus 180 l 180 (660)
.
T Consensus 186 ~ 186 (236)
T cd03267 186 V 186 (236)
T ss_pred H
Confidence 7
No 252
>PRK10419 nikE nickel transporter ATP-binding protein NikE; Provisional
Probab=99.26 E-value=7.5e-12 Score=130.00 Aligned_cols=129 Identities=21% Similarity=0.257 Sum_probs=96.1
Q ss_pred ceEEEEecceeeccCCcceEEEEECCCCCcHHHHHHHHHHhC-CCceEEEecCcccc----------cccccccCCCCC-
Q 006117 49 FFIVIRACQLLAQKNHGIILVGVAGPSGAGKTVFTEKVLNFM-PSIAVITMDNYNDS----------SRIIDGNFDDPR- 116 (660)
Q Consensus 49 ~~~vL~~Isl~i~~ge~~~IIGI~GpSGSGKSTLak~L~~lL-p~~g~I~lDg~~~~----------~~~i~~vfq~p~- 116 (660)
...++++++|.+++|+ +++|+|+||||||||+++|++++ |..|.|.++|.... .+.++++||++.
T Consensus 24 ~~~il~~vs~~i~~Ge---~~~i~G~nGsGKSTLl~~l~Gl~~p~sG~i~~~g~~~~~~~~~~~~~~~~~i~~v~q~~~~ 100 (268)
T PRK10419 24 HQTVLNNVSLSLKSGE---TVALLGRSGCGKSTLARLLVGLESPSQGNVSWRGEPLAKLNRAQRKAFRRDIQMVFQDSIS 100 (268)
T ss_pred ceeeEeceeEEEcCCC---EEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEeccccChhHHHHHHhcEEEEEcChhh
Confidence 3679999999999999 99999999999999999999998 78999999997432 135788999873
Q ss_pred -CCchhhHHHHHHhh-h---c--C-----------ccccc--ccccccccccccceeeecCCccEEEEecceeecccccC
Q 006117 117 -LTDYDTLLENIRGL-K---E--G-----------KAVQV--PIYDFKSSSRIGYRTLEVPSSRIVIIEGIYALSEKLRP 176 (660)
Q Consensus 117 -l~d~~tl~e~L~~L-~---~--G-----------k~I~~--PiyD~s~~~rs~~~~~~v~~a~VVIVEGilaL~deLr~ 176 (660)
+++..++.+++... . . . ..... ...+......++++.+++..++.++.++.+++.||+..
T Consensus 101 ~~~~~~t~~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~~LS~Ge~qrl~laral~~~p~lllLDEPt~ 180 (268)
T PRK10419 101 AVNPRKTVREIIREPLRHLLSLDKAERLARASEMLRAVDLDDSVLDKRPPQLSGGQLQRVCLARALAVEPKLLILDEAVS 180 (268)
T ss_pred ccCCCCCHHHHHHHHHHhhccCCHHHHHHHHHHHHHHcCCChhHhhCCCccCChHHHHHHHHHHHHhcCCCEEEEeCCCc
Confidence 44445666655311 0 0 0 00111 12233444556677888888899999999999999999
Q ss_pred CCCE
Q 006117 177 LIDL 180 (660)
Q Consensus 177 llDl 180 (660)
.+|.
T Consensus 181 ~LD~ 184 (268)
T PRK10419 181 NLDL 184 (268)
T ss_pred ccCH
Confidence 9997
No 253
>cd03216 ABC_Carb_Monos_I This family represents the domain I of the carbohydrate uptake proteins that transport only monosaccharides (Monos). The Carb_Monos family is involved in the uptake of monosaccharides, such as pentoses (such as xylose, arabinose, and ribose) and hexoses (such as xylose, arabinose, and ribose), that cannot be broken down to simple sugars by hydrolysis. Pentoses include xylose, arabinose, and ribose. Important hexoses include glucose, galactose, and fructose. In members of the Carb_monos family, the single hydrophobic gene product forms a homodimer while the ABC protein represents a fusion of two nucleotide-binding domains. However, it is assumed that two copies of the ABC domains are present in the assembled transporter.
Probab=99.26 E-value=6.6e-12 Score=121.14 Aligned_cols=103 Identities=14% Similarity=0.115 Sum_probs=80.6
Q ss_pred ceeeeecCceEEEEecceeeccCCcceEEEEECCCCCcHHHHHHHHHHhC-CCceEEEecCccccc--------cccccc
Q 006117 41 DTLSFEKGFFIVIRACQLLAQKNHGIILVGVAGPSGAGKTVFTEKVLNFM-PSIAVITMDNYNDSS--------RIIDGN 111 (660)
Q Consensus 41 ~~ls~~~g~~~vL~~Isl~i~~ge~~~IIGI~GpSGSGKSTLak~L~~lL-p~~g~I~lDg~~~~~--------~~i~~v 111 (660)
+++++.++...++++++|.+++|+ +++|+|+||||||||+++|++++ |..|.|.+++..... +.++++
T Consensus 4 ~~l~~~~~~~~vl~~i~~~i~~Ge---~~~l~G~nGsGKSTLl~~i~G~~~~~~G~v~~~g~~~~~~~~~~~~~~~i~~~ 80 (163)
T cd03216 4 RGITKRFGGVKALDGVSLSVRRGE---VHALLGENGAGKSTLMKILSGLYKPDSGEILVDGKEVSFASPRDARRAGIAMV 80 (163)
T ss_pred EEEEEEECCeEEEeeeEEEEeCCC---EEEEECCCCCCHHHHHHHHhCCCCCCCeEEEECCEECCcCCHHHHHhcCeEEE
Confidence 445556566689999999999999 99999999999999999999998 789999999864321 011122
Q ss_pred CCCCCCCchhhHHHHHHhhhcCcccccccccccccccccceeeecCCccEEEEecceeecccccCCCCE
Q 006117 112 FDDPRLTDYDTLLENIRGLKEGKAVQVPIYDFKSSSRIGYRTLEVPSSRIVIIEGIYALSEKLRPLIDL 180 (660)
Q Consensus 112 fq~p~l~d~~tl~e~L~~L~~Gk~I~~PiyD~s~~~rs~~~~~~v~~a~VVIVEGilaL~deLr~llDl 180 (660)
|| .++++.+++..++.++.++.+++.||+...+|.
T Consensus 81 ~q----------------------------------LS~G~~qrl~laral~~~p~illlDEP~~~LD~ 115 (163)
T cd03216 81 YQ----------------------------------LSVGERQMVEIARALARNARLLILDEPTAALTP 115 (163)
T ss_pred Ee----------------------------------cCHHHHHHHHHHHHHhcCCCEEEEECCCcCCCH
Confidence 21 344566667777888888888889999999996
No 254
>TIGR03269 met_CoM_red_A2 methyl coenzyme M reductase system, component A2. The enzyme that catalyzes the final step in methanogenesis, methyl coenzyme M reductase, contains alpha, beta, and gamma chains. In older literature, the complex of alpha, beta, and gamma chains was termed component C, while this single chain protein was termed methyl coenzyme M reductase system component A2.
Probab=99.26 E-value=5.4e-12 Score=142.40 Aligned_cols=148 Identities=17% Similarity=0.185 Sum_probs=108.4
Q ss_pred ceEEEEecceeeccCCcceEEEEECCCCCcHHHHHHHHHHhC-CCceEEEec-Ccc---c----------ccccccccCC
Q 006117 49 FFIVIRACQLLAQKNHGIILVGVAGPSGAGKTVFTEKVLNFM-PSIAVITMD-NYN---D----------SSRIIDGNFD 113 (660)
Q Consensus 49 ~~~vL~~Isl~i~~ge~~~IIGI~GpSGSGKSTLak~L~~lL-p~~g~I~lD-g~~---~----------~~~~i~~vfq 113 (660)
...++++++|.+++|+ ++||+|+||||||||+++|++++ |..|.|.++ +.. . ..+.++++||
T Consensus 296 ~~~il~~is~~i~~Ge---~~~l~G~NGsGKSTLl~~l~Gl~~p~~G~i~~~~g~~~~~~~~~~~~~~~~~~~~i~~v~q 372 (520)
T TIGR03269 296 VVKAVDNVSLEVKEGE---IFGIVGTSGAGKTTLSKIIAGVLEPTSGEVNVRVGDEWVDMTKPGPDGRGRAKRYIGILHQ 372 (520)
T ss_pred CceEEeeEEEEEcCCC---EEEEECCCCCCHHHHHHHHhCCCCCCCeEEEEecCCccccccccchhhHHHHhhhEEEEcc
Confidence 3579999999999999 99999999999999999999998 789999995 421 0 0134789999
Q ss_pred CCCCCchhhHHHHHHhhh-cC-------cc-------cccc------cccccccccccceeeecCCccEEEEecceeecc
Q 006117 114 DPRLTDYDTLLENIRGLK-EG-------KA-------VQVP------IYDFKSSSRIGYRTLEVPSSRIVIIEGIYALSE 172 (660)
Q Consensus 114 ~p~l~d~~tl~e~L~~L~-~G-------k~-------I~~P------iyD~s~~~rs~~~~~~v~~a~VVIVEGilaL~d 172 (660)
++.+++..++.+++.... .+ .. ...+ ..+...+..++++.+++..+..++.++.+++.|
T Consensus 373 ~~~l~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~~LSgGq~qrv~laral~~~p~lLllD 452 (520)
T TIGR03269 373 EYDLYPHRTVLDNLTEAIGLELPDELARMKAVITLKMVGFDEEKAEEILDKYPDELSEGERHRVALAQVLIKEPRIVILD 452 (520)
T ss_pred CcccCCCCcHHHHHHHHHHcCCCHHHHHHHHHHHHHhCCCCCccchhhhhCChhhCCHHHHHHHHHHHHHhcCCCEEEEe
Confidence 998888889999885311 00 00 1111 123444566777888888899999999999999
Q ss_pred cccCCCCEEEEEEcChhHHHHHHHHHHHHH-hCCC
Q 006117 173 KLRPLIDLRVSVTGGVHFDLVKRVFRDIQR-VGQE 206 (660)
Q Consensus 173 eLr~llDlkIfVdad~dirLiRRI~RDv~e-RGrs 206 (660)
|+...+|. ...+.+.++.++..+ .|.+
T Consensus 453 EPt~~LD~-------~~~~~l~~~l~~l~~~~g~t 480 (520)
T TIGR03269 453 EPTGTMDP-------ITKVDVTHSILKAREEMEQT 480 (520)
T ss_pred CCcccCCH-------HHHHHHHHHHHHHHHHcCcE
Confidence 99999997 344444454444433 2444
No 255
>cd03250 ABCC_MRP_domain1 Domain 1 of the ABC subfamily C. This family is also known as MRP (mulrtidrug resisitance-associated protein). Some of the MRP members have five additional transmembrane segments in their N-terminas, but the function of these additional membrane-spanning domains is not clear. The MRP was found in the multidrug-resisting lung cancer cell in which p-glycoprotein was not overexpressed. MRP exports glutathione by drug stimulation, as well as, certain substrates in conjugated forms with anions, such as glutathione, glucuronate, and sulfate.
Probab=99.26 E-value=3.1e-12 Score=126.93 Aligned_cols=120 Identities=20% Similarity=0.242 Sum_probs=92.7
Q ss_pred EEEEecceeeccCCcceEEEEECCCCCcHHHHHHHHHHhC-CCceEEEecCcccccccccccCCCCCCCchhhHHHHHHh
Q 006117 51 IVIRACQLLAQKNHGIILVGVAGPSGAGKTVFTEKVLNFM-PSIAVITMDNYNDSSRIIDGNFDDPRLTDYDTLLENIRG 129 (660)
Q Consensus 51 ~vL~~Isl~i~~ge~~~IIGI~GpSGSGKSTLak~L~~lL-p~~g~I~lDg~~~~~~~i~~vfq~p~l~d~~tl~e~L~~ 129 (660)
.++++++|.+++|+ +++|+|+||||||||+++|+++. |..|.|.++| .+++++|++.+++ .++.+++..
T Consensus 19 ~il~~~s~~i~~G~---~~~i~G~nG~GKSTLl~~i~G~~~~~~G~i~~~g------~i~~~~q~~~l~~-~t~~enl~~ 88 (204)
T cd03250 19 FTLKDINLEVPKGE---LVAIVGPVGSGKSSLLSALLGELEKLSGSVSVPG------SIAYVSQEPWIQN-GTIRENILF 88 (204)
T ss_pred ceeeeeeEEECCCC---EEEEECCCCCCHHHHHHHHhCcCCCCCCeEEEcC------EEEEEecCchhcc-CcHHHHhcc
Confidence 69999999999999 99999999999999999999998 7899999998 4788899988774 578877754
Q ss_pred hhcCc---------------cccc-c-----cccccccccccceeeecCCccEEEEecceeecccccCCCCE
Q 006117 130 LKEGK---------------AVQV-P-----IYDFKSSSRIGYRTLEVPSSRIVIIEGIYALSEKLRPLIDL 180 (660)
Q Consensus 130 L~~Gk---------------~I~~-P-----iyD~s~~~rs~~~~~~v~~a~VVIVEGilaL~deLr~llDl 180 (660)
...-. .+.. | ..+......++++.+++..++.++-++.+++.||+...+|.
T Consensus 89 ~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~lS~G~~qrv~laral~~~p~llllDEP~~~LD~ 160 (204)
T cd03250 89 GKPFDEERYEKVIKACALEPDLEILPDGDLTEIGEKGINLSGGQKQRISLARAVYSDADIYLLDDPLSAVDA 160 (204)
T ss_pred CCCcCHHHHHHHHHHcCcHHHHHhccCcccceecCCCCcCCHHHHHHHHHHHHHhcCCCEEEEeCccccCCH
Confidence 21100 0000 0 01112234455677778888889999999999999999986
No 256
>COG4619 ABC-type uncharacterized transport system, ATPase component [General function prediction only]
Probab=99.26 E-value=1.6e-12 Score=126.42 Aligned_cols=135 Identities=16% Similarity=0.279 Sum_probs=99.8
Q ss_pred eeeeecCceEEEEecceeeccCCcceEEEEECCCCCcHHHHHHHHHHhC-CCceEEEecCccccc-------ccccccCC
Q 006117 42 TLSFEKGFFIVIRACQLLAQKNHGIILVGVAGPSGAGKTVFTEKVLNFM-PSIAVITMDNYNDSS-------RIIDGNFD 113 (660)
Q Consensus 42 ~ls~~~g~~~vL~~Isl~i~~ge~~~IIGI~GpSGSGKSTLak~L~~lL-p~~g~I~lDg~~~~~-------~~i~~vfq 113 (660)
++.+.-+...+|+++||.+.+|+ .++|+||||||||||+++++.+. |+.|.+.+.|..... ..+.|+-|
T Consensus 8 q~~y~a~~a~il~~isl~v~~Ge---~iaitGPSG~GKStllk~va~Lisp~~G~l~f~Ge~vs~~~pea~Rq~VsY~~Q 84 (223)
T COG4619 8 QVGYLAGDAKILNNISLSVRAGE---FIAITGPSGCGKSTLLKIVASLISPTSGTLLFEGEDVSTLKPEAYRQQVSYCAQ 84 (223)
T ss_pred HHHhhcCCCeeecceeeeecCCc---eEEEeCCCCccHHHHHHHHHhccCCCCceEEEcCccccccChHHHHHHHHHHHc
Confidence 33344566789999999999999 99999999999999999999998 899999999975432 45788889
Q ss_pred CCCCCchhhHHHHHHh---hhcCc-----------ccccc--cccccccccccceeeecCCccEEEEecceeecccccCC
Q 006117 114 DPRLTDYDTLLENIRG---LKEGK-----------AVQVP--IYDFKSSSRIGYRTLEVPSSRIVIIEGIYALSEKLRPL 177 (660)
Q Consensus 114 ~p~l~d~~tl~e~L~~---L~~Gk-----------~I~~P--iyD~s~~~rs~~~~~~v~~a~VVIVEGilaL~deLr~l 177 (660)
.|.+|. +++.+|+.. +++.+ ....| ..+......++++.+++...+-+-+-+..++.||+...
T Consensus 85 ~paLfg-~tVeDNlifP~~~r~rr~dr~aa~~llar~~l~~~~L~k~it~lSGGE~QriAliR~Lq~~P~ILLLDE~TsA 163 (223)
T COG4619 85 TPALFG-DTVEDNLIFPWQIRNRRPDRAAALDLLARFALPDSILTKNITELSGGEKQRIALIRNLQFMPKILLLDEITSA 163 (223)
T ss_pred Cccccc-cchhhccccchHHhccCCChHHHHHHHHHcCCchhhhcchhhhccchHHHHHHHHHHhhcCCceEEecCchhh
Confidence 998876 677777642 11111 12222 23333445567777777666667777777788998888
Q ss_pred CCE
Q 006117 178 IDL 180 (660)
Q Consensus 178 lDl 180 (660)
+|.
T Consensus 164 LD~ 166 (223)
T COG4619 164 LDE 166 (223)
T ss_pred cCh
Confidence 886
No 257
>cd03249 ABC_MTABC3_MDL1_MDL2 MTABC3 (also known as ABCB6) is a mitochondrial ATP-binding cassette protein involved in iron homeostasis and one of four ABC transporters expressed in the mitochondrial inner membrane, the other three being MDL1(ABC7), MDL2, and ATM1. In fact, the yeast MDL1 (multidrug resistance-like protein 1) and MDL2 (multidrug resistance-like protein 2) transporters are also included in this CD. MDL1 is an ATP-dependent permease that acts as a high-copy suppressor of ATM1 and is thought to have a role in resistance to oxidative stress. Interestingly, subfamily B is more closely related to the carboxyl-terminal component of subfamily C than the two halves of ABCC molecules are with one another.
Probab=99.26 E-value=6.2e-12 Score=127.53 Aligned_cols=127 Identities=21% Similarity=0.287 Sum_probs=96.0
Q ss_pred eEEEEecceeeccCCcceEEEEECCCCCcHHHHHHHHHHhC-CCceEEEecCcccc-------cccccccCCCCCCCchh
Q 006117 50 FIVIRACQLLAQKNHGIILVGVAGPSGAGKTVFTEKVLNFM-PSIAVITMDNYNDS-------SRIIDGNFDDPRLTDYD 121 (660)
Q Consensus 50 ~~vL~~Isl~i~~ge~~~IIGI~GpSGSGKSTLak~L~~lL-p~~g~I~lDg~~~~-------~~~i~~vfq~p~l~d~~ 121 (660)
..++++++|.+++|+ ++||+|+||||||||+++|++++ |..|.|.++|.... .+.+++++|++.+++ .
T Consensus 16 ~~~l~~i~~~i~~Ge---~~~l~G~nGsGKSTLl~~i~G~~~~~~G~i~~~g~~~~~~~~~~~~~~i~~~~q~~~~~~-~ 91 (238)
T cd03249 16 VPILKGLSLTIPPGK---TVALVGSSGCGKSTVVSLLERFYDPTSGEILLDGVDIRDLNLRWLRSQIGLVSQEPVLFD-G 91 (238)
T ss_pred ccceeceEEEecCCC---EEEEEeCCCCCHHHHHHHHhccCCCCCCEEEECCEehhhcCHHHHHhhEEEECCchhhhh-h
Confidence 468999999999999 99999999999999999999998 78999999986432 134788999988776 5
Q ss_pred hHHHHHHhhhcCc---c---------c-----ccc-----cccccccccccceeeecCCccEEEEecceeecccccCCCC
Q 006117 122 TLLENIRGLKEGK---A---------V-----QVP-----IYDFKSSSRIGYRTLEVPSSRIVIIEGIYALSEKLRPLID 179 (660)
Q Consensus 122 tl~e~L~~L~~Gk---~---------I-----~~P-----iyD~s~~~rs~~~~~~v~~a~VVIVEGilaL~deLr~llD 179 (660)
++.+++....... . + ..| ..+...+..++++..++..+..++.++.+++.||+...+|
T Consensus 92 tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~LS~G~~qrv~la~al~~~p~llllDEP~~gLD 171 (238)
T cd03249 92 TIAENIRYGKPDATDEEVEEAAKKANIHDFIMSLPDGYDTLVGERGSQLSGGQKQRIAIARALLRNPKILLLDEATSALD 171 (238)
T ss_pred hHHHHhhccCCCCCHHHHHHHHHHcChHHHHHhhccccceeeccCCccCCHHHHHHHHHHHHHhcCCCEEEEeCccccCC
Confidence 8888875421100 0 0 000 0111223445667777888888999999999999999999
Q ss_pred E
Q 006117 180 L 180 (660)
Q Consensus 180 l 180 (660)
.
T Consensus 172 ~ 172 (238)
T cd03249 172 A 172 (238)
T ss_pred H
Confidence 7
No 258
>COG4175 ProV ABC-type proline/glycine betaine transport system, ATPase component [Amino acid transport and metabolism]
Probab=99.26 E-value=5.5e-12 Score=132.62 Aligned_cols=130 Identities=21% Similarity=0.226 Sum_probs=107.8
Q ss_pred CceEEEEecceeeccCCcceEEEEECCCCCcHHHHHHHHHHhC-CCceEEEecCccccc-----------ccccccCCCC
Q 006117 48 GFFIVIRACQLLAQKNHGIILVGVAGPSGAGKTVFTEKVLNFM-PSIAVITMDNYNDSS-----------RIIDGNFDDP 115 (660)
Q Consensus 48 g~~~vL~~Isl~i~~ge~~~IIGI~GpSGSGKSTLak~L~~lL-p~~g~I~lDg~~~~~-----------~~i~~vfq~p 115 (660)
|....+++++|.++.|+ |..|.|-||||||||+++|.++. |+.|.|.+||.+... +.++++||++
T Consensus 39 g~vvGv~~~sl~v~~Ge---IfViMGLSGSGKSTLvR~~NrLiept~G~ilv~g~di~~~~~~~Lr~~Rr~~~sMVFQ~F 115 (386)
T COG4175 39 GLVVGVNDASLDVEEGE---IFVIMGLSGSGKSTLVRLLNRLIEPTRGEILVDGKDIAKLSAAELRELRRKKISMVFQSF 115 (386)
T ss_pred CcEEeeccceeeecCCe---EEEEEecCCCCHHHHHHHHhccCCCCCceEEECCcchhcCCHHHHHHHHhhhhhhhhhhh
Confidence 56678999999999999 99999999999999999999998 899999999975432 4578999999
Q ss_pred CCCchhhHHHHHHhhhc--C--------------cccccccc-cccccccccceeeecCCccEEEEecceeecccccCCC
Q 006117 116 RLTDYDTLLENIRGLKE--G--------------KAVQVPIY-DFKSSSRIGYRTLEVPSSRIVIIEGIYALSEKLRPLI 178 (660)
Q Consensus 116 ~l~d~~tl~e~L~~L~~--G--------------k~I~~Piy-D~s~~~rs~~~~~~v~~a~VVIVEGilaL~deLr~ll 178 (660)
.++++.++.+|+..-.+ | +.+-...| ++..++.+++.++++..++.+..++..++.||.+..+
T Consensus 116 aLlPhrtVl~Nv~fGLev~Gv~~~er~~~a~~~l~~VgL~~~~~~yp~eLSGGMqQRVGLARAla~~~~IlLMDEaFSAL 195 (386)
T COG4175 116 ALLPHRTVLENVAFGLEVQGVPKAEREERALEALELVGLEGYADKYPNELSGGMQQRVGLARALANDPDILLMDEAFSAL 195 (386)
T ss_pred ccccchhHhhhhhcceeecCCCHHHHHHHHHHHHHHcCchhhhhcCcccccchHHHHHHHHHHHccCCCEEEecCchhhc
Confidence 99999999999875332 1 01222222 3446778888888999999999999999999999999
Q ss_pred CE
Q 006117 179 DL 180 (660)
Q Consensus 179 Dl 180 (660)
|.
T Consensus 196 DP 197 (386)
T COG4175 196 DP 197 (386)
T ss_pred Ch
Confidence 97
No 259
>cd03299 ABC_ModC_like Archeal protein closely related to ModC. ModC is an ABC-type transporter and the ATPase component of a molybdate transport system that also includes the periplasmic binding protein ModA and the membrane protein ModB. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.26 E-value=8.1e-12 Score=127.01 Aligned_cols=155 Identities=18% Similarity=0.240 Sum_probs=112.4
Q ss_pred eeeeecCceEEEEecceeeccCCcceEEEEECCCCCcHHHHHHHHHHhC-CCceEEEecCcccc-----cccccccCCCC
Q 006117 42 TLSFEKGFFIVIRACQLLAQKNHGIILVGVAGPSGAGKTVFTEKVLNFM-PSIAVITMDNYNDS-----SRIIDGNFDDP 115 (660)
Q Consensus 42 ~ls~~~g~~~vL~~Isl~i~~ge~~~IIGI~GpSGSGKSTLak~L~~lL-p~~g~I~lDg~~~~-----~~~i~~vfq~p 115 (660)
++++.++.. ++++++|.+.+|+ ++||+|+||||||||+++|++.+ |..|.|.++|.+.. .+.+++++|++
T Consensus 5 ~l~~~~~~~-~l~~is~~i~~Ge---~~~i~G~nG~GKStLl~~l~G~~~p~~G~v~i~g~~~~~~~~~~~~i~~~~q~~ 80 (235)
T cd03299 5 NLSKDWKEF-KLKNVSLEVERGD---YFVILGPTGSGKSVLLETIAGFIKPDSGKILLNGKDITNLPPEKRDISYVPQNY 80 (235)
T ss_pred eEEEEeCCc-eeeeeEEEEcCCc---EEEEECCCCCCHHHHHHHHhCCcCCCceEEEECCEEcCcCChhHcCEEEEeecC
Confidence 444444443 7999999999999 99999999999999999999998 78999999997542 23578999999
Q ss_pred CCCchhhHHHHHHhhh-c-Cc--------------cccc-ccccccccccccceeeecCCccEEEEecceeecccccCCC
Q 006117 116 RLTDYDTLLENIRGLK-E-GK--------------AVQV-PIYDFKSSSRIGYRTLEVPSSRIVIIEGIYALSEKLRPLI 178 (660)
Q Consensus 116 ~l~d~~tl~e~L~~L~-~-Gk--------------~I~~-PiyD~s~~~rs~~~~~~v~~a~VVIVEGilaL~deLr~ll 178 (660)
.+++..++.+++.... . +. .+.. +..+...+..++++.+++..++.++-.+.+++.||+...+
T Consensus 81 ~~~~~~t~~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrl~laral~~~p~llllDEPt~gL 160 (235)
T cd03299 81 ALFPHMTVYKNIAYGLKKRKVDKKEIERKVLEIAEMLGIDHLLNRKPETLSGGEQQRVAIARALVVNPKILLLDEPFSAL 160 (235)
T ss_pred ccCCCccHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCChhHHhcCcccCCHHHHHHHHHHHHHHcCCCEEEECCCcccC
Confidence 8888888888886321 1 10 0001 1123333445566777788888888899999999999999
Q ss_pred CEEEEEEcChhHHHHHHHHHHHHH-hCCCH
Q 006117 179 DLRVSVTGGVHFDLVKRVFRDIQR-VGQEP 207 (660)
Q Consensus 179 DlkIfVdad~dirLiRRI~RDv~e-RGrs~ 207 (660)
|. ........+.++... +|.+.
T Consensus 161 D~-------~~~~~l~~~l~~~~~~~~~ti 183 (235)
T cd03299 161 DV-------RTKEKLREELKKIRKEFGVTV 183 (235)
T ss_pred CH-------HHHHHHHHHHHHHHHhcCCEE
Confidence 97 445555566665543 25543
No 260
>PRK15134 microcin C ABC transporter ATP-binding protein YejF; Provisional
Probab=99.26 E-value=9.9e-12 Score=140.66 Aligned_cols=148 Identities=16% Similarity=0.194 Sum_probs=108.3
Q ss_pred eEEEEecceeeccCCcceEEEEECCCCCcHHHHHHHHHHhC-C-----CceEEEecCcccc-----------cccccccC
Q 006117 50 FIVIRACQLLAQKNHGIILVGVAGPSGAGKTVFTEKVLNFM-P-----SIAVITMDNYNDS-----------SRIIDGNF 112 (660)
Q Consensus 50 ~~vL~~Isl~i~~ge~~~IIGI~GpSGSGKSTLak~L~~lL-p-----~~g~I~lDg~~~~-----------~~~i~~vf 112 (660)
..++++++|.+.+|+ ++||+|+||||||||+++|++++ | ..|.|.++|.... .+.++++|
T Consensus 22 ~~~l~~isl~i~~Ge---~~~iiG~nGsGKSTLl~~i~G~~~~~~~~~~~G~i~~~g~~i~~~~~~~~~~~~~~~ig~v~ 98 (529)
T PRK15134 22 RTVVNDVSLQIEAGE---TLALVGESGSGKSVTALSILRLLPSPPVVYPSGDIRFHGESLLHASEQTLRGVRGNKIAMIF 98 (529)
T ss_pred eeeeeceEEEEeCCC---EEEEECCCCCcHHHHHHHHhcCCCCCcCCccceEEEECCEecccCCHHHHHHHhcCceEEEe
Confidence 579999999999999 99999999999999999999998 3 5899999986421 13578999
Q ss_pred CCCC--CCchhhHHHHHHhhh---cCc--------------ccccc----cccccccccccceeeecCCccEEEEeccee
Q 006117 113 DDPR--LTDYDTLLENIRGLK---EGK--------------AVQVP----IYDFKSSSRIGYRTLEVPSSRIVIIEGIYA 169 (660)
Q Consensus 113 q~p~--l~d~~tl~e~L~~L~---~Gk--------------~I~~P----iyD~s~~~rs~~~~~~v~~a~VVIVEGila 169 (660)
|++. +++..++.+++.... .+. .+..+ ..+...+..++++.+++..++.++.++.++
T Consensus 99 Q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~~~~LSgGe~qrv~iAraL~~~p~ll 178 (529)
T PRK15134 99 QEPMVSLNPLHTLEKQLYEVLSLHRGMRREAARGEILNCLDRVGIRQAAKRLTDYPHQLSGGERQRVMIAMALLTRPELL 178 (529)
T ss_pred cCchhhcCchhhHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHCCCCChHHHHhhCCcccCHHHHHHHHHHHHHhcCCCEE
Confidence 9975 555667777664211 110 01111 123345566778888899999999999999
Q ss_pred ecccccCCCCEEEEEEcChhHHHHHHHHHHHHH-hCCCH
Q 006117 170 LSEKLRPLIDLRVSVTGGVHFDLVKRVFRDIQR-VGQEP 207 (660)
Q Consensus 170 L~deLr~llDlkIfVdad~dirLiRRI~RDv~e-RGrs~ 207 (660)
+.||+...+|. .....+..+.+++.. .|.+.
T Consensus 179 llDEPt~~LD~-------~~~~~l~~~l~~l~~~~g~tv 210 (529)
T PRK15134 179 IADEPTTALDV-------SVQAQILQLLRELQQELNMGL 210 (529)
T ss_pred EEcCCCCccCH-------HHHHHHHHHHHHHHHhcCCeE
Confidence 99999999997 344445555555543 35554
No 261
>PRK14238 phosphate transporter ATP-binding protein; Provisional
Probab=99.26 E-value=8.7e-12 Score=129.70 Aligned_cols=137 Identities=16% Similarity=0.194 Sum_probs=102.6
Q ss_pred cceeeeecCceEEEEecceeeccCCcceEEEEECCCCCcHHHHHHHHHHhC------CCceEEEecCcccc---------
Q 006117 40 EDTLSFEKGFFIVIRACQLLAQKNHGIILVGVAGPSGAGKTVFTEKVLNFM------PSIAVITMDNYNDS--------- 104 (660)
Q Consensus 40 ~~~ls~~~g~~~vL~~Isl~i~~ge~~~IIGI~GpSGSGKSTLak~L~~lL------p~~g~I~lDg~~~~--------- 104 (660)
.+++++.++...++++++|.+++|+ ++||+|+||||||||+++|++++ |..|.|.++|....
T Consensus 27 ~~~l~~~~~~~~il~~vsl~i~~Ge---~~~I~G~nGsGKSTLl~~i~Gl~~~~~~~~~~G~i~~~g~~~~~~~~~~~~~ 103 (271)
T PRK14238 27 TQNLNLWYGEDHALKNINLDIHENE---VTAIIGPSGCGKSTYIKTLNRMVELVPSVKTTGKILYRDQNIFDKSYSVEEL 103 (271)
T ss_pred EeeeEEEECCcceeeeeEEEEcCCC---EEEEECCCCCCHHHHHHHHHhhccCCCCCCCceeEEECCEEcccccccHHHH
Confidence 4555566566679999999999999 99999999999999999999997 37899999986431
Q ss_pred cccccccCCCCCCCchhhHHHHHHhhh--cCc----ccc---------------c-ccccccccccccceeeecCCccEE
Q 006117 105 SRIIDGNFDDPRLTDYDTLLENIRGLK--EGK----AVQ---------------V-PIYDFKSSSRIGYRTLEVPSSRIV 162 (660)
Q Consensus 105 ~~~i~~vfq~p~l~d~~tl~e~L~~L~--~Gk----~I~---------------~-PiyD~s~~~rs~~~~~~v~~a~VV 162 (660)
.+.++++||++.+++ .++.+++.... .+. ... . ...+......++++.+++..++.+
T Consensus 104 ~~~i~~v~q~~~~~~-~tv~eni~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~l~~~~~~~~~~LSgGe~qrv~laraL 182 (271)
T PRK14238 104 RTNVGMVFQKPNPFP-KSIYDNVTYGPKIHGIKDKKTLDEIVEKSLRGAAIWDELKDRLHDNAYGLSGGQQQRLCIARCL 182 (271)
T ss_pred hhhEEEEecCCcccc-ccHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHcCCcchHHHHHhcCcccCCHHHHHHHHHHHHH
Confidence 235789999998887 48888886321 010 000 0 011223344556677778888888
Q ss_pred EEecceeecccccCCCCE
Q 006117 163 IIEGIYALSEKLRPLIDL 180 (660)
Q Consensus 163 IVEGilaL~deLr~llDl 180 (660)
+.++.+++.||+...+|.
T Consensus 183 ~~~p~lllLDEPt~~LD~ 200 (271)
T PRK14238 183 AIEPDVILMDEPTSALDP 200 (271)
T ss_pred HcCCCEEEEeCCCCcCCH
Confidence 999999999999999997
No 262
>PRK13547 hmuV hemin importer ATP-binding subunit; Provisional
Probab=99.25 E-value=9.9e-12 Score=129.79 Aligned_cols=137 Identities=15% Similarity=0.129 Sum_probs=99.7
Q ss_pred ceeeeecCceEEEEecceeeccCCcceEEEEECCCCCcHHHHHHHHHHhC-CC--------ceEEEecCccccc------
Q 006117 41 DTLSFEKGFFIVIRACQLLAQKNHGIILVGVAGPSGAGKTVFTEKVLNFM-PS--------IAVITMDNYNDSS------ 105 (660)
Q Consensus 41 ~~ls~~~g~~~vL~~Isl~i~~ge~~~IIGI~GpSGSGKSTLak~L~~lL-p~--------~g~I~lDg~~~~~------ 105 (660)
+++++.++...+++++||.+++|+ ++||+|+||||||||+++|++++ |. .|.|.++|.....
T Consensus 5 ~nl~~~~~~~~il~~vsl~i~~Ge---~~~l~G~nGsGKSTLl~~laG~~~p~~~~~~~~~~G~i~~~g~~~~~~~~~~~ 81 (272)
T PRK13547 5 DHLHVARRHRAILRDLSLRIEPGR---VTALLGRNGAGKSTLLKALAGDLTGGGAPRGARVTGDVTLNGEPLAAIDAPRL 81 (272)
T ss_pred EEEEEEECCEeEEecceEEEcCCC---EEEEECCCCCCHHHHHHHHhCCCCCcccccccCCceEEEECCEEcccCCHHHH
Confidence 455566666789999999999999 99999999999999999999998 55 8999999964321
Q ss_pred -ccccccCCCCCCCchhhHHHHHHhhhc------Cc-------c-------cccc-cccccccccccceeeecCCccEEE
Q 006117 106 -RIIDGNFDDPRLTDYDTLLENIRGLKE------GK-------A-------VQVP-IYDFKSSSRIGYRTLEVPSSRIVI 163 (660)
Q Consensus 106 -~~i~~vfq~p~l~d~~tl~e~L~~L~~------Gk-------~-------I~~P-iyD~s~~~rs~~~~~~v~~a~VVI 163 (660)
+.++++||++..+...++.+++..... +. . ...+ ..+......++++.+++..+..++
T Consensus 82 ~~~~~~v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgG~~qrv~laral~ 161 (272)
T PRK13547 82 ARLRAVLPQAAQPAFAFSAREIVLLGRYPHARRAGALTHRDGEIAWQALALAGATALVGRDVTTLSGGELARVQFARVLA 161 (272)
T ss_pred HhhcEEecccCCCCCCCcHHHHHhhcccccccccccCCHHHHHHHHHHHHHcCcHhhhcCCcccCCHHHHHHHHHHHHHh
Confidence 236789998875555788888754210 00 0 0000 112223345556667777777777
Q ss_pred ---------EecceeecccccCCCCE
Q 006117 164 ---------IEGIYALSEKLRPLIDL 180 (660)
Q Consensus 164 ---------VEGilaL~deLr~llDl 180 (660)
.++.+++.||+...+|.
T Consensus 162 ~~~~~~~~~~~p~lllLDEPt~~LD~ 187 (272)
T PRK13547 162 QLWPPHDAAQPPRYLLLDEPTAALDL 187 (272)
T ss_pred ccccccccCCCCCEEEEcCccccCCH
Confidence 48888889999999997
No 263
>cd03369 ABCC_NFT1 Domain 2 of NFT1 (New full-length MRP-type transporter 1). NFT1 belongs to the MRP (mulrtidrug resisitance-associated protein) family of ABC transporters. Some of the MRP members have five additional transmembrane segments in their N-terminas, but the function of these additional membrane-spanning domains is not clear. The MRP was found in the multidrug-resisting lung cancer cell in which p-glycoprotein was not overexpressed. MRP exports glutathione by drug stimulation, as well as, certain substrates in conjugated forms with anions such as glutathione, glucuronate, and sulfate.
Probab=99.25 E-value=4.4e-12 Score=126.19 Aligned_cols=127 Identities=16% Similarity=0.166 Sum_probs=97.4
Q ss_pred eEEEEecceeeccCCcceEEEEECCCCCcHHHHHHHHHHhC-CCceEEEecCcccc-------cccccccCCCCCCCchh
Q 006117 50 FIVIRACQLLAQKNHGIILVGVAGPSGAGKTVFTEKVLNFM-PSIAVITMDNYNDS-------SRIIDGNFDDPRLTDYD 121 (660)
Q Consensus 50 ~~vL~~Isl~i~~ge~~~IIGI~GpSGSGKSTLak~L~~lL-p~~g~I~lDg~~~~-------~~~i~~vfq~p~l~d~~ 121 (660)
..++++++|.+++|+ +++|+|+||||||||+++|++++ |..|.|.++|.... .+.+++++|++.+++ .
T Consensus 21 ~~~l~~isl~i~~G~---~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~~~i~~v~q~~~~~~-~ 96 (207)
T cd03369 21 PPVLKNVSFKVKAGE---KIGIVGRTGAGKSTLILALFRFLEAEEGKIEIDGIDISTIPLEDLRSSLTIIPQDPTLFS-G 96 (207)
T ss_pred cccccCceEEECCCC---EEEEECCCCCCHHHHHHHHhcccCCCCCeEEECCEEhHHCCHHHHHhhEEEEecCCcccC-c
Confidence 469999999999999 99999999999999999999998 78999999986432 245789999998886 4
Q ss_pred hHHHHHHhhhcCcccc-ccc--ccccccccccceeeecCCccEEEEecceeecccccCCCCE
Q 006117 122 TLLENIRGLKEGKAVQ-VPI--YDFKSSSRIGYRTLEVPSSRIVIIEGIYALSEKLRPLIDL 180 (660)
Q Consensus 122 tl~e~L~~L~~Gk~I~-~Pi--yD~s~~~rs~~~~~~v~~a~VVIVEGilaL~deLr~llDl 180 (660)
++.+++.....-.... ... .+......++++.+++..++.++.++.+++.||+...+|.
T Consensus 97 tv~~~l~~~~~~~~~~~~~~l~~~~~~~~LS~G~~qrv~laral~~~p~llllDEP~~~LD~ 158 (207)
T cd03369 97 TIRSNLDPFDEYSDEEIYGALRVSEGGLNLSQGQRQLLCLARALLKRPRVLVLDEATASIDY 158 (207)
T ss_pred cHHHHhcccCCCCHHHHHHHhhccCCCCcCCHHHHHHHHHHHHHhhCCCEEEEeCCcccCCH
Confidence 8988885432100000 000 2223344555677778888888889999999999999987
No 264
>PRK14254 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.25 E-value=1.7e-11 Score=128.77 Aligned_cols=137 Identities=17% Similarity=0.155 Sum_probs=104.0
Q ss_pred cceeeeecCceEEEEecceeeccCCcceEEEEECCCCCcHHHHHHHHHHhC------CCceEEEecCcccc---------
Q 006117 40 EDTLSFEKGFFIVIRACQLLAQKNHGIILVGVAGPSGAGKTVFTEKVLNFM------PSIAVITMDNYNDS--------- 104 (660)
Q Consensus 40 ~~~ls~~~g~~~vL~~Isl~i~~ge~~~IIGI~GpSGSGKSTLak~L~~lL------p~~g~I~lDg~~~~--------- 104 (660)
.+++++.++...++++++|.+.+|+ ++||+|+||||||||+++|++++ |..|.|.++|....
T Consensus 42 i~~l~~~~~~~~il~~is~~i~~Ge---~~~I~G~nGsGKSTLl~~l~Gl~~~~~~~p~~G~I~i~G~~i~~~~~~~~~~ 118 (285)
T PRK14254 42 ARDLNVFYGDEQALDDVSMDIPENQ---VTAMIGPSGCGKSTFLRCINRMNDLIDAARVEGELTFRGKNVYDADVDPVAL 118 (285)
T ss_pred EEEEEEEECCEeeEeeeEEEEcCCC---EEEEECCCCCCHHHHHHHHhccCCcccCCCCceEEEECCEEccccccchHhh
Confidence 4566666666789999999999999 99999999999999999999997 36899999986431
Q ss_pred cccccccCCCCCCCchhhHHHHHHhhhc--Cc-------------cccc-----ccccccccccccceeeecCCccEEEE
Q 006117 105 SRIIDGNFDDPRLTDYDTLLENIRGLKE--GK-------------AVQV-----PIYDFKSSSRIGYRTLEVPSSRIVII 164 (660)
Q Consensus 105 ~~~i~~vfq~p~l~d~~tl~e~L~~L~~--Gk-------------~I~~-----PiyD~s~~~rs~~~~~~v~~a~VVIV 164 (660)
.+.+++++|++.+++. ++.+++..... +. .... ...+...+..++++.+++..++.++.
T Consensus 119 ~~~i~~v~q~~~l~~~-tv~enl~~~~~~~~~~~~~~~~~~~~l~~~~l~~~i~~~~~~~~~~LSgGe~qrv~LAraL~~ 197 (285)
T PRK14254 119 RRRIGMVFQKPNPFPK-SIYDNVAYGLKIQGYDGDIDERVEESLRRAALWDEVKDQLDSSGLDLSGGQQQRLCIARAIAP 197 (285)
T ss_pred hccEEEEecCCccCcC-CHHHHHHHHHHHcCCcHHHHHHHHHHHHHcCCCchhHHHHhCCcccCCHHHHHHHHHHHHHHc
Confidence 1357899999988874 88888753211 10 0000 01233344566677888888889999
Q ss_pred ecceeecccccCCCCE
Q 006117 165 EGIYALSEKLRPLIDL 180 (660)
Q Consensus 165 EGilaL~deLr~llDl 180 (660)
++.+++.||+...+|.
T Consensus 198 ~p~lLLLDEPts~LD~ 213 (285)
T PRK14254 198 DPEVILMDEPASALDP 213 (285)
T ss_pred CCCEEEEeCCCCCCCH
Confidence 9999999999999997
No 265
>PRK09700 D-allose transporter ATP-binding protein; Provisional
Probab=99.25 E-value=8.2e-12 Score=140.65 Aligned_cols=147 Identities=13% Similarity=0.106 Sum_probs=107.6
Q ss_pred EEEEecceeeccCCcceEEEEECCCCCcHHHHHHHHHHhC-CCceEEEecCcccc--------cccccccCCC---CCCC
Q 006117 51 IVIRACQLLAQKNHGIILVGVAGPSGAGKTVFTEKVLNFM-PSIAVITMDNYNDS--------SRIIDGNFDD---PRLT 118 (660)
Q Consensus 51 ~vL~~Isl~i~~ge~~~IIGI~GpSGSGKSTLak~L~~lL-p~~g~I~lDg~~~~--------~~~i~~vfq~---p~l~ 118 (660)
.+++++||.+++|+ ++||+|+||||||||+++|++++ |+.|.|.++|.... .+.++++||+ +.++
T Consensus 277 ~~l~~isl~i~~Ge---~~~l~G~NGsGKSTLlk~i~Gl~~p~~G~I~~~g~~~~~~~~~~~~~~~i~~v~q~~~~~~~~ 353 (510)
T PRK09700 277 KKVRDISFSVCRGE---ILGFAGLVGSGRTELMNCLFGVDKRAGGEIRLNGKDISPRSPLDAVKKGMAYITESRRDNGFF 353 (510)
T ss_pred CcccceeEEEcCCc---EEEEECCCCCCHHHHHHHHhCCCcCCCCeEEECCEECCCCCHHHHHHCCcEEccCccccCCCc
Confidence 38999999999999 99999999999999999999998 78999999986431 1347899997 3577
Q ss_pred chhhHHHHHHhhhc----------C---c------------ccccc--cccccccccccceeeecCCccEEEEecceeec
Q 006117 119 DYDTLLENIRGLKE----------G---K------------AVQVP--IYDFKSSSRIGYRTLEVPSSRIVIIEGIYALS 171 (660)
Q Consensus 119 d~~tl~e~L~~L~~----------G---k------------~I~~P--iyD~s~~~rs~~~~~~v~~a~VVIVEGilaL~ 171 (660)
+..++.+++..... + . .+..+ ..+...+..++++.+++..++.++.++.+++.
T Consensus 354 ~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgGq~qrv~lAral~~~p~lLlL 433 (510)
T PRK09700 354 PNFSIAQNMAISRSLKDGGYKGAMGLFHEVDEQRTAENQRELLALKCHSVNQNITELSGGNQQKVLISKWLCCCPEVIIF 433 (510)
T ss_pred CCCcHHHHhccccccccccccccccccChHHHHHHHHHHHHhcCCCCCCccCccccCChHHHHHHHHHHHHhcCCCEEEE
Confidence 77788888753100 0 0 01111 12333455677788888899999999999999
Q ss_pred ccccCCCCEEEEEEcChhHHHHHHHHHHHHHhCCCH
Q 006117 172 EKLRPLIDLRVSVTGGVHFDLVKRVFRDIQRVGQEP 207 (660)
Q Consensus 172 deLr~llDlkIfVdad~dirLiRRI~RDv~eRGrs~ 207 (660)
||+...+|. .....+..+.+.....|.+.
T Consensus 434 DEPt~~LD~-------~~~~~l~~~l~~l~~~g~tv 462 (510)
T PRK09700 434 DEPTRGIDV-------GAKAEIYKVMRQLADDGKVI 462 (510)
T ss_pred CCCCCCcCH-------HHHHHHHHHHHHHHHCCCEE
Confidence 999999998 33444455555544445443
No 266
>TIGR02868 CydC thiol reductant ABC exporter, CydC subunit. The gene pair cydCD encodes an ABC-family transporter in which each gene contains an N-terminal membrane-spanning domain (pfam00664) and a C-terminal ATP-binding domain (pfam00005). In E. coli these genes were discovered as mutants which caused the terminal heme-copper oxidase complex cytochrome bd to fail to assemble. Recent work has shown that the transporter is involved in export of redox-active thiol compounds such as cysteine and glutathione. The linkage to assembly of the cytochrome bd complex is further supported by the conserved operon structure found outside the gammaproteobacteria (cydABCD) containing both the transporter and oxidase genes components. The genes used as the seed members for this model are all either found in the gammproteobacterial context or the CydABCD context. All members of this family scoring above trusted at the time of its creation were from genomes which encode a cytochrome bd complex.
Probab=99.25 E-value=4.8e-12 Score=142.86 Aligned_cols=137 Identities=22% Similarity=0.226 Sum_probs=106.6
Q ss_pred cceeeeecCc-eEEEEecceeeccCCcceEEEEECCCCCcHHHHHHHHHHhC-CCceEEEecCcccc------ccccccc
Q 006117 40 EDTLSFEKGF-FIVIRACQLLAQKNHGIILVGVAGPSGAGKTVFTEKVLNFM-PSIAVITMDNYNDS------SRIIDGN 111 (660)
Q Consensus 40 ~~~ls~~~g~-~~vL~~Isl~i~~ge~~~IIGI~GpSGSGKSTLak~L~~lL-p~~g~I~lDg~~~~------~~~i~~v 111 (660)
-++++|.++. ..+|+++||.+++|+ .++|+|+||||||||++.|++++ |+.|.|.+||.+.. .+.++++
T Consensus 337 ~~~vsf~Y~~~~~vL~~isl~i~~G~---~vaIvG~SGsGKSTLl~lL~g~~~p~~G~I~i~g~~i~~~~~~lr~~i~~V 413 (529)
T TIGR02868 337 LRDLSFGYPGSPPVLDGVSLDLPPGE---RVAILGPSGSGKSTLLMLLTGLLDPLQGEVTLDGVSVSSLQDELRRRISVF 413 (529)
T ss_pred EEEEEEecCCCCceeecceEEEcCCC---EEEEECCCCCCHHHHHHHHhcCCCCCCcEEEECCEEhhhHHHHHHhheEEE
Confidence 4556666643 469999999999999 99999999999999999999998 89999999996433 2468899
Q ss_pred CCCCCCCchhhHHHHHHhhhcC----------------cccc-cc-ccccccc----ccccceeeecCCccEEEEeccee
Q 006117 112 FDDPRLTDYDTLLENIRGLKEG----------------KAVQ-VP-IYDFKSS----SRIGYRTLEVPSSRIVIIEGIYA 169 (660)
Q Consensus 112 fq~p~l~d~~tl~e~L~~L~~G----------------k~I~-~P-iyD~s~~----~rs~~~~~~v~~a~VVIVEGila 169 (660)
+|+|.+|+ .++++|+...... +.+. .| -||-..+ ..++++.+++..++.++-++.++
T Consensus 414 ~Q~~~lF~-~TI~eNI~~g~~~~~~e~i~~al~~a~l~~~i~~lp~GldT~ige~G~~LSGGQrQRiaiARall~~~~il 492 (529)
T TIGR02868 414 AQDAHLFD-TTVRDNLRLGRPDATDEELWAALERVGLADWLRSLPDGLDTVLGEGGARLSGGERQRLALARALLADAPIL 492 (529)
T ss_pred ccCccccc-ccHHHHHhccCCCCCHHHHHHHHHHcCCHHHHHhCcccccchhccccCcCCHHHHHHHHHHHHHhcCCCEE
Confidence 99999987 5899998653211 0111 12 2333222 24667888999999999999999
Q ss_pred ecccccCCCCE
Q 006117 170 LSEKLRPLIDL 180 (660)
Q Consensus 170 L~deLr~llDl 180 (660)
+.||+...+|.
T Consensus 493 iLDE~TSaLD~ 503 (529)
T TIGR02868 493 LLDEPTEHLDA 503 (529)
T ss_pred EEeCCcccCCH
Confidence 99999999986
No 267
>cd03234 ABCG_White The White subfamily represents ABC transporters homologous to the Drosophila white gene, which acts as a dimeric importer for eye pigment precursors. The eye pigmentation of Drosophila is developed from the synthesis and deposition in the cells of red pigments, which are synthesized from guanine, and brown pigments, which are synthesized from tryptophan. The pigment precursors are encoded by the white, brown, and scarlet genes, respectively. Evidence from genetic and biochemical studies suggest that the White and Brown proteins function as heterodimers to import guanine, while the White and Scarlet proteins function to import tryptophan. However, a recent study also suggests that White may be involved in the transport of a metabolite, such as 3-hydroxykynurenine, across intracellular membranes. Mammalian ABC transporters belonging to the White subfamily (ABCG1, ABCG5, and ABCG8) have been shown to be involved in the regulation of lipid-trafficking mechanisms in
Probab=99.25 E-value=7.7e-12 Score=126.20 Aligned_cols=128 Identities=13% Similarity=0.072 Sum_probs=97.4
Q ss_pred eEEEEecceeeccCCcceEEEEECCCCCcHHHHHHHHHHhCC----CceEEEecCcccc----cccccccCCCCCCCchh
Q 006117 50 FIVIRACQLLAQKNHGIILVGVAGPSGAGKTVFTEKVLNFMP----SIAVITMDNYNDS----SRIIDGNFDDPRLTDYD 121 (660)
Q Consensus 50 ~~vL~~Isl~i~~ge~~~IIGI~GpSGSGKSTLak~L~~lLp----~~g~I~lDg~~~~----~~~i~~vfq~p~l~d~~ 121 (660)
..++++++|.+++|+ +++|+|+||||||||+++|+++++ ..|.|.++|.... .+.+++++|++.+++..
T Consensus 20 ~~~l~~vsl~i~~Ge---~~~l~G~nGsGKSTLlk~l~G~~~~~~~~~G~i~~~g~~~~~~~~~~~i~~~~q~~~~~~~~ 96 (226)
T cd03234 20 ARILNDVSLHVESGQ---VMAILGSSGSGKTTLLDAISGRVEGGGTTSGQILFNGQPRKPDQFQKCVAYVRQDDILLPGL 96 (226)
T ss_pred cccccCceEEEcCCe---EEEEECCCCCCHHHHHHHHhCccCCCCCCceEEEECCEECChHHhcccEEEeCCCCccCcCC
Confidence 679999999999999 999999999999999999999974 7899999987432 24578999999999888
Q ss_pred hHHHHHHhhhc--C-c--c-------c---cccc------ccccccccccceeeecCCccEEEEecceeecccccCCCCE
Q 006117 122 TLLENIRGLKE--G-K--A-------V---QVPI------YDFKSSSRIGYRTLEVPSSRIVIIEGIYALSEKLRPLIDL 180 (660)
Q Consensus 122 tl~e~L~~L~~--G-k--~-------I---~~Pi------yD~s~~~rs~~~~~~v~~a~VVIVEGilaL~deLr~llDl 180 (660)
++.+++..... + . . + ..+. .+......++++..++..++.++.++.+++.||+...+|.
T Consensus 97 tv~enl~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrl~laral~~~p~illlDEP~~gLD~ 176 (226)
T cd03234 97 TVRETLTYTAILRLPRKSSDAIRKKRVEDVLLRDLALTRIGGNLVKGISGGERRRVSIAVQLLWDPKVLILDEPTSGLDS 176 (226)
T ss_pred cHHHHHHHHHHhhcccccchHHHHHHHHHHHHHhhcchhhhcccccCcCHHHHHHHHHHHHHHhCCCEEEEeCCCcCCCH
Confidence 99998863211 1 0 0 0 0111 1112233455666777777888888899999999999997
No 268
>PRK14271 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.25 E-value=1.2e-11 Score=129.11 Aligned_cols=139 Identities=14% Similarity=0.089 Sum_probs=105.3
Q ss_pred eccceeeeecCceEEEEecceeeccCCcceEEEEECCCCCcHHHHHHHHHHhC-C-----CceEEEecCcccc-------
Q 006117 38 PIEDTLSFEKGFFIVIRACQLLAQKNHGIILVGVAGPSGAGKTVFTEKVLNFM-P-----SIAVITMDNYNDS------- 104 (660)
Q Consensus 38 ~~~~~ls~~~g~~~vL~~Isl~i~~ge~~~IIGI~GpSGSGKSTLak~L~~lL-p-----~~g~I~lDg~~~~------- 104 (660)
...+++++.++...++++++|.+++|+ ++||+|+||||||||+++|++++ | ..|.|.++|....
T Consensus 22 l~i~nl~~~~~~~~il~~vs~~i~~Ge---~~~I~G~nGsGKSTLl~~l~Gl~~p~~~~~~~G~i~~~g~~i~~~~~~~~ 98 (276)
T PRK14271 22 MAAVNLTLGFAGKTVLDQVSMGFPARA---VTSLMGPTGSGKTTFLRTLNRMNDKVSGYRYSGDVLLGGRSIFNYRDVLE 98 (276)
T ss_pred EEEeeEEEEECCEEEeeeeEEEEcCCc---EEEEECCCCCCHHHHHHHHhccCCcCCCCCCceEEEECCEEccccchhHH
Confidence 344666677777789999999999999 99999999999999999999998 4 5899999986532
Q ss_pred -cccccccCCCCCCCchhhHHHHHHhhhc--C----cc-----------cccc-----cccccccccccceeeecCCccE
Q 006117 105 -SRIIDGNFDDPRLTDYDTLLENIRGLKE--G----KA-----------VQVP-----IYDFKSSSRIGYRTLEVPSSRI 161 (660)
Q Consensus 105 -~~~i~~vfq~p~l~d~~tl~e~L~~L~~--G----k~-----------I~~P-----iyD~s~~~rs~~~~~~v~~a~V 161 (660)
...+++++|++.+|+ .++.+++..... . .. .... .++......++++.+++..++.
T Consensus 99 ~~~~i~~v~q~~~l~~-~tv~eni~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~l~~~~~~LSgGq~qrl~LAra 177 (276)
T PRK14271 99 FRRRVGMLFQRPNPFP-MSIMDNVLAGVRAHKLVPRKEFRGVAQARLTEVGLWDAVKDRLSDSPFRLSGGQQQLLCLART 177 (276)
T ss_pred HhhheEEeccCCccCC-ccHHHHHHHHHHhccCCCHHHHHHHHHHHHHHcCCCchhhhHhhCCcccCCHHHHHHHHHHHH
Confidence 234789999998887 788888764211 0 00 0010 1122233455667778888888
Q ss_pred EEEecceeecccccCCCCE
Q 006117 162 VIIEGIYALSEKLRPLIDL 180 (660)
Q Consensus 162 VIVEGilaL~deLr~llDl 180 (660)
++.++.+++.||+...+|.
T Consensus 178 l~~~p~lllLDEPt~~LD~ 196 (276)
T PRK14271 178 LAVNPEVLLLDEPTSALDP 196 (276)
T ss_pred HhcCCCEEEEcCCcccCCH
Confidence 9999999999999999996
No 269
>TIGR02323 CP_lyasePhnK phosphonate C-P lyase system protein PhnK. Members of this family are the PhnK protein of C-P lyase systems for utilization of phosphonates. These systems resemble phosphonatase-based systems in having a three component ABC transporter, where TIGR01097 is the permease, TIGR01098 is the phosphonates binding protein, and TIGR02315 is the ATP-binding cassette (ABC) protein. They differ, however, in having, typically, ten or more additional genes, many of which are believed to form a membrane-associated complex. This protein (PhnK) and the adjacent-encoded PhnL resemble transporter ATP-binding proteins but are suggested, based on mutatgenesis studies, to be part of this complex rather than part of a transporter per se.
Probab=99.25 E-value=8e-12 Score=128.02 Aligned_cols=138 Identities=16% Similarity=0.081 Sum_probs=97.8
Q ss_pred cceeeeecCceEEEEecceeeccCCcceEEEEECCCCCcHHHHHHHHHHhC-CCceEEEecCcc-----cc---------
Q 006117 40 EDTLSFEKGFFIVIRACQLLAQKNHGIILVGVAGPSGAGKTVFTEKVLNFM-PSIAVITMDNYN-----DS--------- 104 (660)
Q Consensus 40 ~~~ls~~~g~~~vL~~Isl~i~~ge~~~IIGI~GpSGSGKSTLak~L~~lL-p~~g~I~lDg~~-----~~--------- 104 (660)
.+++++.++...++++++|.+++|+ +++|+|+||||||||+++|++++ |..|.|.++|.. ..
T Consensus 6 ~~~l~~~~~~~~~l~~isl~i~~Ge---~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~~~~ 82 (253)
T TIGR02323 6 VSGLSKSYGGGKGCRDVSFDLYPGE---VLGIVGESGSGKSTLLGCLAGRLAPDHGTATYIMRSGAELELYQLSEAERRR 82 (253)
T ss_pred EeeeEEEeCCceEeecceEEEeCCc---EEEEECCCCCCHHHHHHHHhCCCCCCCcEEEEecccccccccccCCHHHHHH
Confidence 3455555565678999999999999 99999999999999999999998 789999998754 21
Q ss_pred --cccccccCCCCCC--CchhhHHHHHHh----hhc---C----------ccccc--ccccccccccccceeeecCCccE
Q 006117 105 --SRIIDGNFDDPRL--TDYDTLLENIRG----LKE---G----------KAVQV--PIYDFKSSSRIGYRTLEVPSSRI 161 (660)
Q Consensus 105 --~~~i~~vfq~p~l--~d~~tl~e~L~~----L~~---G----------k~I~~--PiyD~s~~~rs~~~~~~v~~a~V 161 (660)
.+.+++++|++.. +...++.+++.. ... . ..... ...+......++++.+++..++.
T Consensus 83 ~~~~~i~~~~q~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~LSgG~~qrv~lara 162 (253)
T TIGR02323 83 LMRTEWGFVHQNPRDGLRMRVSAGANIGERLMAIGARHYGNIRAAAHDWLEEVEIDPTRIDDLPRAFSGGMQQRLQIARN 162 (253)
T ss_pred hhhcceEEEEeCcccccCccccHHHHHHHHHHHhcccchHHHHHHHHHHHHHcCCChhhhhcCchhcCHHHHHHHHHHHH
Confidence 1236788888742 222334444321 000 0 00111 12233344556677888888899
Q ss_pred EEEecceeecccccCCCCE
Q 006117 162 VIIEGIYALSEKLRPLIDL 180 (660)
Q Consensus 162 VIVEGilaL~deLr~llDl 180 (660)
++.++.+++.||+...+|.
T Consensus 163 l~~~p~vlllDEP~~~LD~ 181 (253)
T TIGR02323 163 LVTRPRLVFMDEPTGGLDV 181 (253)
T ss_pred HhcCCCEEEEcCCCccCCH
Confidence 9999999999999999997
No 270
>cd03290 ABCC_SUR1_N The SUR domain 1. The sulfonylurea receptor SUR is an ATP transporter of the ABCC/MRP family with tandem ATPase binding domains. Unlike other ABC proteins, it has no intrinsic transport function, neither active nor passive, but associates with the potassium channel proteins Kir6.1 or Kir6.2 to form the ATP-sensitive potassium (K(ATP)) channel. Within the channel complex, SUR serves as a regulatory subunit that fine-tunes the gating of Kir6.x in response to alterations in cellular metabolism. It constitutes a major pharmaceutical target as it binds numerous drugs, K(ATP) channel openers and blockers, capable of up- or down-regulating channel activity.
Probab=99.25 E-value=8e-12 Score=125.27 Aligned_cols=134 Identities=16% Similarity=0.149 Sum_probs=99.3
Q ss_pred eeeecC-ceEEEEecceeeccCCcceEEEEECCCCCcHHHHHHHHHHhC-CCceEEEecCcccc-----------ccccc
Q 006117 43 LSFEKG-FFIVIRACQLLAQKNHGIILVGVAGPSGAGKTVFTEKVLNFM-PSIAVITMDNYNDS-----------SRIID 109 (660)
Q Consensus 43 ls~~~g-~~~vL~~Isl~i~~ge~~~IIGI~GpSGSGKSTLak~L~~lL-p~~g~I~lDg~~~~-----------~~~i~ 109 (660)
+.+.++ ...++++++|.+++|+ +++|+|+||||||||+++|++.+ |..|.|.+++.... .+.++
T Consensus 6 ~~~~~~~~~~il~~vs~~i~~Ge---~~~i~G~nGsGKSTLl~~i~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~~~~i~ 82 (218)
T cd03290 6 GYFSWGSGLATLSNINIRIPTGQ---LTMIVGQVGCGKSSLLLAILGEMQTLEGKVHWSNKNESEPSFEATRSRNRYSVA 82 (218)
T ss_pred eEEecCCCCcceeeeEEEEcCCC---EEEEECCCCCCHHHHHHHHhccCCCCCCeEEECCcccccccccccchhhcceEE
Confidence 334443 3569999999999999 99999999999999999999998 78999999986421 13478
Q ss_pred ccCCCCCCCchhhHHHHHHhhhcC--cc-------c------c-ccc-----ccccccccccceeeecCCccEEEEecce
Q 006117 110 GNFDDPRLTDYDTLLENIRGLKEG--KA-------V------Q-VPI-----YDFKSSSRIGYRTLEVPSSRIVIIEGIY 168 (660)
Q Consensus 110 ~vfq~p~l~d~~tl~e~L~~L~~G--k~-------I------~-~Pi-----yD~s~~~rs~~~~~~v~~a~VVIVEGil 168 (660)
+++|++.+++ .++.+++...... .. . . .|. .+......++++.+++..++.++.++.+
T Consensus 83 ~~~q~~~~~~-~t~~~nl~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~LS~G~~qrv~laral~~~p~i 161 (218)
T cd03290 83 YAAQKPWLLN-ATVEENITFGSPFNKQRYKAVTDACSLQPDIDLLPFGDQTEIGERGINLSGGQRQRICVARALYQNTNI 161 (218)
T ss_pred EEcCCCcccc-ccHHHHHhhcCcCCHHHHHHHHHHhCcHHHHHhCcCccccCcccCCCcCCHHHHHHHHHHHHHhhCCCE
Confidence 8999998774 5888887643210 00 0 0 000 1122334556677788888899999999
Q ss_pred eecccccCCCCE
Q 006117 169 ALSEKLRPLIDL 180 (660)
Q Consensus 169 aL~deLr~llDl 180 (660)
++.||+...+|.
T Consensus 162 lllDEPt~~LD~ 173 (218)
T cd03290 162 VFLDDPFSALDI 173 (218)
T ss_pred EEEeCCccccCH
Confidence 999999999996
No 271
>PRK15056 manganese/iron transporter ATP-binding protein; Provisional
Probab=99.25 E-value=1.4e-11 Score=128.18 Aligned_cols=158 Identities=10% Similarity=0.104 Sum_probs=105.4
Q ss_pred cceeeeecC-ceEEEEecceeeccCCcceEEEEECCCCCcHHHHHHHHHHhC-CCceEEEecCcccc----cccccccCC
Q 006117 40 EDTLSFEKG-FFIVIRACQLLAQKNHGIILVGVAGPSGAGKTVFTEKVLNFM-PSIAVITMDNYNDS----SRIIDGNFD 113 (660)
Q Consensus 40 ~~~ls~~~g-~~~vL~~Isl~i~~ge~~~IIGI~GpSGSGKSTLak~L~~lL-p~~g~I~lDg~~~~----~~~i~~vfq 113 (660)
.+++++.++ ...++++++|.+++|+ ++||+|+||||||||+++|++++ |..|.|.++|.... ...+++++|
T Consensus 9 ~~~l~~~~~~~~~il~~vsl~i~~Ge---~~~l~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~i~~~~~~~~i~~v~q 85 (272)
T PRK15056 9 VNDVTVTWRNGHTALRDASFTVPGGS---IAALVGVNGSGKSTLFKALMGFVRLASGKISILGQPTRQALQKNLVAYVPQ 85 (272)
T ss_pred EEeEEEEecCCcEEEEeeEEEEcCCC---EEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEEhHHhhccceEEEecc
Confidence 344555543 4579999999999999 99999999999999999999998 78999999996432 124788888
Q ss_pred CCCCC--chhhHHHHHHhhh---------cC-----------ccccc-ccccccccccccceeeecCCccEEEEecceee
Q 006117 114 DPRLT--DYDTLLENIRGLK---------EG-----------KAVQV-PIYDFKSSSRIGYRTLEVPSSRIVIIEGIYAL 170 (660)
Q Consensus 114 ~p~l~--d~~tl~e~L~~L~---------~G-----------k~I~~-PiyD~s~~~rs~~~~~~v~~a~VVIVEGilaL 170 (660)
++.+. ...++.+++.... .. +.... +..+...+..++++.+++..++.++.++.+++
T Consensus 86 ~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~LSgG~~qrv~laraL~~~p~lll 165 (272)
T PRK15056 86 SEEVDWSFPVLVEDVVMMGRYGHMGWLRRAKKRDRQIVTAALARVDMVEFRHRQIGELSGGQKKRVFLARAIAQQGQVIL 165 (272)
T ss_pred ccccccCCCcchhhheecccccccccccCCCHHHHHHHHHHHHHcCChhHhcCCcccCCHHHHHHHHHHHHHhcCCCEEE
Confidence 86541 1123333332100 00 00001 11233344556677778888888999999999
Q ss_pred cccccCCCCEEEEEEcChhHHHHHHHHHHHHHhCCCH
Q 006117 171 SEKLRPLIDLRVSVTGGVHFDLVKRVFRDIQRVGQEP 207 (660)
Q Consensus 171 ~deLr~llDlkIfVdad~dirLiRRI~RDv~eRGrs~ 207 (660)
.||+...+|. ...+.+..+.+.+...|.+.
T Consensus 166 lDEPt~~LD~-------~~~~~l~~~L~~~~~~g~tv 195 (272)
T PRK15056 166 LDEPFTGVDV-------KTEARIISLLRELRDEGKTM 195 (272)
T ss_pred EeCCCccCCH-------HHHHHHHHHHHHHHhCCCEE
Confidence 9999999997 33344444455554445443
No 272
>cd03253 ABCC_ATM1_transporter ATM1 is an ABC transporter that is expressed in the mitochondria. Although the specific function of ATM1 is unknown, its disruption results in the accumulation of excess mitochondrial iron, loss of mitochondrial cytochromes, oxidative damage to mitochondrial DNA, and decreased levels of cytosolic heme proteins. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.24 E-value=9e-12 Score=126.08 Aligned_cols=135 Identities=21% Similarity=0.232 Sum_probs=99.9
Q ss_pred eeeeecC-ceEEEEecceeeccCCcceEEEEECCCCCcHHHHHHHHHHhC-CCceEEEecCcccc-------cccccccC
Q 006117 42 TLSFEKG-FFIVIRACQLLAQKNHGIILVGVAGPSGAGKTVFTEKVLNFM-PSIAVITMDNYNDS-------SRIIDGNF 112 (660)
Q Consensus 42 ~ls~~~g-~~~vL~~Isl~i~~ge~~~IIGI~GpSGSGKSTLak~L~~lL-p~~g~I~lDg~~~~-------~~~i~~vf 112 (660)
++++.++ ...++++++|.+++|+ +++|+|+||||||||+++|++++ |..|.|.++|.... .+.+++++
T Consensus 5 ~l~~~~~~~~~~l~~i~~~i~~Ge---~~~l~G~nGsGKSTLl~~i~Gl~~~~~G~v~~~g~~~~~~~~~~~~~~i~~~~ 81 (236)
T cd03253 5 NVTFAYDPGRPVLKDVSFTIPAGK---KVAIVGPSGSGKSTILRLLFRFYDVSSGSILIDGQDIREVTLDSLRRAIGVVP 81 (236)
T ss_pred EEEEEeCCCCceeeeeEEEEcCCC---EEEEECCCCCCHHHHHHHHhcccCCCCCEEEECCEEhhhCCHHHHHhhEEEEC
Confidence 3444442 3568999999999999 99999999999999999999998 78999999986432 13478899
Q ss_pred CCCCCCchhhHHHHHHhhhcCc---c---------c-----ccc-c----ccccccccccceeeecCCccEEEEecceee
Q 006117 113 DDPRLTDYDTLLENIRGLKEGK---A---------V-----QVP-I----YDFKSSSRIGYRTLEVPSSRIVIIEGIYAL 170 (660)
Q Consensus 113 q~p~l~d~~tl~e~L~~L~~Gk---~---------I-----~~P-i----yD~s~~~rs~~~~~~v~~a~VVIVEGilaL 170 (660)
|++.+++ .++.+++....... . + ..| . .+......++++..++..++.++.++.+++
T Consensus 82 q~~~~~~-~tv~~nl~~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~~~~~~~~~~~~LS~G~~~rl~la~aL~~~p~lll 160 (236)
T cd03253 82 QDTVLFN-DTIGYNIRYGRPDATDEEVIEAAKAAQIHDKIMRFPDGYDTIVGERGLKLSGGEKQRVAIARAILKNPPILL 160 (236)
T ss_pred CCChhhc-chHHHHHhhcCCCCCHHHHHHHHHHcCcHHHHHhccccccchhhcCCCcCCHHHHHHHHHHHHHhcCCCEEE
Confidence 9998886 58888875421110 0 0 000 0 011123445567777888889999999999
Q ss_pred cccccCCCCE
Q 006117 171 SEKLRPLIDL 180 (660)
Q Consensus 171 ~deLr~llDl 180 (660)
.||+...+|.
T Consensus 161 lDEP~~~LD~ 170 (236)
T cd03253 161 LDEATSALDT 170 (236)
T ss_pred EeCCcccCCH
Confidence 9999999997
No 273
>cd03245 ABCC_bacteriocin_exporters ABC-type bacteriocin exporters. Many non-lantibiotic bacteriocins of lactic acid bacteria are produced as precursors which have N-terminal leader peptides that share similarities in amino acid sequence and contain a conserved processing site of two glycine residues in positions -1 and -2. A dedicated ATP-binding cassette (ABC) transporter is responsible for the proteolytic cleavage of the leader peptides and subsequent translocation of the bacteriocins across the cytoplasmic membrane.
Probab=99.24 E-value=4.6e-12 Score=126.84 Aligned_cols=135 Identities=18% Similarity=0.176 Sum_probs=99.6
Q ss_pred eeeeecCc--eEEEEecceeeccCCcceEEEEECCCCCcHHHHHHHHHHhC-CCceEEEecCcccc-------ccccccc
Q 006117 42 TLSFEKGF--FIVIRACQLLAQKNHGIILVGVAGPSGAGKTVFTEKVLNFM-PSIAVITMDNYNDS-------SRIIDGN 111 (660)
Q Consensus 42 ~ls~~~g~--~~vL~~Isl~i~~ge~~~IIGI~GpSGSGKSTLak~L~~lL-p~~g~I~lDg~~~~-------~~~i~~v 111 (660)
++++.++. ..++++++|.+++|+ ++||+||||||||||+++|++.. |..|.|.++|.... ...++++
T Consensus 7 ~l~~~~~~~~~~~l~~i~~~i~~G~---~~~i~G~nGsGKSTLl~~i~G~~~~~~G~i~~~g~~~~~~~~~~~~~~i~~~ 83 (220)
T cd03245 7 NVSFSYPNQEIPALDNVSLTIRAGE---KVAIIGRVGSGKSTLLKLLAGLYKPTSGSVLLDGTDIRQLDPADLRRNIGYV 83 (220)
T ss_pred EEEEEcCCCCcccccceEEEEcCCC---EEEEECCCCCCHHHHHHHHhcCcCCCCCeEEECCEEhHHCCHHHHHhhEEEe
Confidence 34444432 568999999999999 99999999999999999999998 78999999986432 1357899
Q ss_pred CCCCCCCchhhHHHHHHhhhcCc---c-------ccc-ccccc-----------cccccccceeeecCCccEEEEeccee
Q 006117 112 FDDPRLTDYDTLLENIRGLKEGK---A-------VQV-PIYDF-----------KSSSRIGYRTLEVPSSRIVIIEGIYA 169 (660)
Q Consensus 112 fq~p~l~d~~tl~e~L~~L~~Gk---~-------I~~-PiyD~-----------s~~~rs~~~~~~v~~a~VVIVEGila 169 (660)
+|++.+++ .++.+++....... . ... ...+. .....++++.+++..+..++.++.++
T Consensus 84 ~q~~~~~~-~tv~e~l~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~~~~~~~~LSgG~~qrl~la~al~~~p~ll 162 (220)
T cd03245 84 PQDVTLFY-GTLRDNITLGAPLADDERILRAAELAGVTDFVNKHPNGLDLQIGERGRGLSGGQRQAVALARALLNDPPIL 162 (220)
T ss_pred CCCCcccc-chHHHHhhcCCCCCCHHHHHHHHHHcCcHHHHHhccccccceecCCCccCCHHHHHHHHHHHHHhcCCCEE
Confidence 99998876 58888875321100 0 000 00111 12345566777888888899999999
Q ss_pred ecccccCCCCE
Q 006117 170 LSEKLRPLIDL 180 (660)
Q Consensus 170 L~deLr~llDl 180 (660)
+.||+...+|.
T Consensus 163 llDEPt~~LD~ 173 (220)
T cd03245 163 LLDEPTSAMDM 173 (220)
T ss_pred EEeCccccCCH
Confidence 99999999997
No 274
>PRK13645 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=99.24 E-value=8.7e-12 Score=130.77 Aligned_cols=126 Identities=19% Similarity=0.233 Sum_probs=95.2
Q ss_pred EEEEecceeeccCCcceEEEEECCCCCcHHHHHHHHHHhC-CCceEEEecCcccc------------cccccccCCCCC-
Q 006117 51 IVIRACQLLAQKNHGIILVGVAGPSGAGKTVFTEKVLNFM-PSIAVITMDNYNDS------------SRIIDGNFDDPR- 116 (660)
Q Consensus 51 ~vL~~Isl~i~~ge~~~IIGI~GpSGSGKSTLak~L~~lL-p~~g~I~lDg~~~~------------~~~i~~vfq~p~- 116 (660)
.++++++|.+++|+ ++||+|+||||||||+++|++++ |..|.|.++|.... .+.+++++|++.
T Consensus 25 ~il~~is~~i~~Ge---~~~l~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~i~~~~~~~~~~~~~~~~i~~v~q~~~~ 101 (289)
T PRK13645 25 KALNNTSLTFKKNK---VTCVIGTTGSGKSTMIQLTNGLIISETGQTIVGDYAIPANLKKIKEVKRLRKEIGLVFQFPEY 101 (289)
T ss_pred ceeeeeEEEEeCCC---EEEEECCCCCCHHHHHHHHhcCCCCCCceEEECCEEccccccccccHHHHhccEEEEEeCcch
Confidence 59999999999999 99999999999999999999998 78999999986421 134788999874
Q ss_pred -CCchhhHHHHHHhhhc--Cc--------------ccccc--cccccccccccceeeecCCccEEEEecceeecccccCC
Q 006117 117 -LTDYDTLLENIRGLKE--GK--------------AVQVP--IYDFKSSSRIGYRTLEVPSSRIVIIEGIYALSEKLRPL 177 (660)
Q Consensus 117 -l~d~~tl~e~L~~L~~--Gk--------------~I~~P--iyD~s~~~rs~~~~~~v~~a~VVIVEGilaL~deLr~l 177 (660)
+++ .++.+++..... +. ....+ ..+......++++.+++..++.++.++.+++.||+...
T Consensus 102 ~~~~-~tv~enl~~~~~~~~~~~~~~~~~~~~ll~~~~L~~~~~~~~~~~LS~Gq~qrv~laral~~~p~lLlLDEPt~~ 180 (289)
T PRK13645 102 QLFQ-ETIEKDIAFGPVNLGENKQEAYKKVPELLKLVQLPEDYVKRSPFELSGGQKRRVALAGIIAMDGNTLVLDEPTGG 180 (289)
T ss_pred hhhh-hHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCChhHhcCChhhCCHHHHHHHHHHHHHHhCCCEEEEeCCccc
Confidence 333 478887753211 10 01111 12233344566778888888999999999999999999
Q ss_pred CCE
Q 006117 178 IDL 180 (660)
Q Consensus 178 lDl 180 (660)
+|.
T Consensus 181 LD~ 183 (289)
T PRK13645 181 LDP 183 (289)
T ss_pred CCH
Confidence 997
No 275
>cd03248 ABCC_TAP TAP, the Transporter Associated with Antigen Processing; TAP is essential for peptide delivery from the cytosol into the lumen of the endoplasmic reticulum (ER), where these peptides are loaded on major histocompatibility complex (MHC) I molecules. Loaded MHC I leave the ER and display their antigenic cargo on the cell surface to cytotoxic T cells. Subsequently, virus-infected or malignantly transformed cells can be eliminated. TAP belongs to the large family of ATP-binding cassette (ABC) transporters, which translocate a vast variety of solutes across membranes.
Probab=99.24 E-value=8e-12 Score=125.79 Aligned_cols=127 Identities=19% Similarity=0.208 Sum_probs=96.4
Q ss_pred eEEEEecceeeccCCcceEEEEECCCCCcHHHHHHHHHHhC-CCceEEEecCcccc-------cccccccCCCCCCCchh
Q 006117 50 FIVIRACQLLAQKNHGIILVGVAGPSGAGKTVFTEKVLNFM-PSIAVITMDNYNDS-------SRIIDGNFDDPRLTDYD 121 (660)
Q Consensus 50 ~~vL~~Isl~i~~ge~~~IIGI~GpSGSGKSTLak~L~~lL-p~~g~I~lDg~~~~-------~~~i~~vfq~p~l~d~~ 121 (660)
..++++++|.+++|+ ++||+|+||||||||+++|++++ |..|.|.++|.... .+.+++++|++.+++ .
T Consensus 27 ~~~l~~is~~i~~Ge---~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~~~i~~~~q~~~l~~-~ 102 (226)
T cd03248 27 TLVLQDVSFTLHPGE---VTALVGPSGSGKSTVVALLENFYQPQGGQVLLDGKPISQYEHKYLHSKVSLVGQEPVLFA-R 102 (226)
T ss_pred CccccceEEEEcCCC---EEEEECCCCCCHHHHHHHHhcCcCCCCcEEEECCCchHHcCHHHHHhhEEEEecccHHHh-h
Confidence 469999999999999 99999999999999999999998 78999999986432 135788999988775 5
Q ss_pred hHHHHHHhhhcCcc-------------------c--cc-ccccccccccccceeeecCCccEEEEecceeecccccCCCC
Q 006117 122 TLLENIRGLKEGKA-------------------V--QV-PIYDFKSSSRIGYRTLEVPSSRIVIIEGIYALSEKLRPLID 179 (660)
Q Consensus 122 tl~e~L~~L~~Gk~-------------------I--~~-PiyD~s~~~rs~~~~~~v~~a~VVIVEGilaL~deLr~llD 179 (660)
++.+++........ . .. +..+......++++.+++..++.++-.+.+++.||+...+|
T Consensus 103 tv~~nl~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~gl~~~~~~~~~~LSgG~~qrv~laral~~~p~llllDEPt~~LD 182 (226)
T cd03248 103 SLQDNIAYGLQSCSFECVKEAAQKAHAHSFISELASGYDTEVGEKGSQLSGGQKQRVAIARALIRNPQVLILDEATSALD 182 (226)
T ss_pred hHHHHhccccCCCCHHHHHHHHHHcCcHHHHHhccccccchhhcCCCcCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCC
Confidence 88888753111000 0 00 11222233455667777888888999999999999999999
Q ss_pred E
Q 006117 180 L 180 (660)
Q Consensus 180 l 180 (660)
.
T Consensus 183 ~ 183 (226)
T cd03248 183 A 183 (226)
T ss_pred H
Confidence 7
No 276
>KOG0057 consensus Mitochondrial Fe/S cluster exporter, ABC superfamily [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.24 E-value=1.2e-11 Score=137.48 Aligned_cols=136 Identities=21% Similarity=0.283 Sum_probs=107.0
Q ss_pred ceeeeecCceE-EEEecceeeccCCcceEEEEECCCCCcHHHHHHHHHHhCCCceEEEecCccccc-------ccccccC
Q 006117 41 DTLSFEKGFFI-VIRACQLLAQKNHGIILVGVAGPSGAGKTVFTEKVLNFMPSIAVITMDNYNDSS-------RIIDGNF 112 (660)
Q Consensus 41 ~~ls~~~g~~~-vL~~Isl~i~~ge~~~IIGI~GpSGSGKSTLak~L~~lLp~~g~I~lDg~~~~~-------~~i~~vf 112 (660)
+++++.++... +|+++||.+++|+ -|||+|+|||||||+++.|.+++...|.|.+||.+... +.++++|
T Consensus 355 ~dV~f~y~~k~~iL~gvsf~I~kGe---kVaIvG~nGsGKSTilr~LlrF~d~sG~I~IdG~dik~~~~~SlR~~Ig~VP 431 (591)
T KOG0057|consen 355 DDVHFSYGPKRKVLKGVSFTIPKGE---KVAIVGSNGSGKSTILRLLLRFFDYSGSILIDGQDIKEVSLESLRQSIGVVP 431 (591)
T ss_pred EeeEEEeCCCCceecceeEEecCCC---EEEEECCCCCCHHHHHHHHHHHhccCCcEEECCeeHhhhChHHhhhheeEeC
Confidence 45666777665 9999999999999 99999999999999999999999889999999986432 4589999
Q ss_pred CCCCCCchhhHHHHHHhhhcC-----------c-----cc-ccc-cccccccc----cccceeeecCCccEEEEecceee
Q 006117 113 DDPRLTDYDTLLENIRGLKEG-----------K-----AV-QVP-IYDFKSSS----RIGYRTLEVPSSRIVIIEGIYAL 170 (660)
Q Consensus 113 q~p~l~d~~tl~e~L~~L~~G-----------k-----~I-~~P-iyD~s~~~----rs~~~~~~v~~a~VVIVEGilaL 170 (660)
|+..+|+ +++..|+..-... + .+ ..| -|+-..++ .++++.+++..++.++-+++.++
T Consensus 432 Qd~~LFn-dTIl~NI~YGn~sas~eeV~e~~k~a~~hd~i~~l~~GY~T~VGerG~~LSGGekQrvslaRa~lKda~Il~ 510 (591)
T KOG0057|consen 432 QDSVLFN-DTILYNIKYGNPSASDEEVVEACKRAGLHDVISRLPDGYQTLVGERGLMLSGGEKQRVSLARAFLKDAPILL 510 (591)
T ss_pred Ccccccc-hhHHHHhhcCCCCcCHHHHHHHHHHcCcHHHHHhccccchhhHhhcccccccchHHHHHHHHHHhcCCCeEE
Confidence 9999987 6888887642210 0 01 111 23333333 35678889999999999999999
Q ss_pred cccccCCCCE
Q 006117 171 SEKLRPLIDL 180 (660)
Q Consensus 171 ~deLr~llDl 180 (660)
.||....+|-
T Consensus 511 ~DEaTS~LD~ 520 (591)
T KOG0057|consen 511 LDEATSALDS 520 (591)
T ss_pred ecCcccccch
Confidence 9999999886
No 277
>PRK14243 phosphate transporter ATP-binding protein; Provisional
Probab=99.24 E-value=1.6e-11 Score=127.15 Aligned_cols=136 Identities=20% Similarity=0.228 Sum_probs=101.8
Q ss_pred ceeeeecCceEEEEecceeeccCCcceEEEEECCCCCcHHHHHHHHHHhCC------CceEEEecCcccc---------c
Q 006117 41 DTLSFEKGFFIVIRACQLLAQKNHGIILVGVAGPSGAGKTVFTEKVLNFMP------SIAVITMDNYNDS---------S 105 (660)
Q Consensus 41 ~~ls~~~g~~~vL~~Isl~i~~ge~~~IIGI~GpSGSGKSTLak~L~~lLp------~~g~I~lDg~~~~---------~ 105 (660)
+++++.++...++++++|.+++|+ ++||+|+||||||||+++|+++++ ..|.|.++|.... .
T Consensus 14 ~~v~~~~~~~~il~~vsl~i~~Ge---~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~i~~~g~~i~~~~~~~~~~~ 90 (264)
T PRK14243 14 ENLNVYYGSFLAVKNVWLDIPKNQ---ITAFIGPSGCGKSTILRCFNRLNDLIPGFRVEGKVTFHGKNLYAPDVDPVEVR 90 (264)
T ss_pred eeeEEEECCEEEeecceEEEcCCC---EEEEECCCCCCHHHHHHHHHhhhcccCCCCCceEEEECCEEccccccChHHHh
Confidence 445555566689999999999999 999999999999999999999862 6899999986431 1
Q ss_pred ccccccCCCCCCCchhhHHHHHHhhhc--C------cccc-------c-----ccccccccccccceeeecCCccEEEEe
Q 006117 106 RIIDGNFDDPRLTDYDTLLENIRGLKE--G------KAVQ-------V-----PIYDFKSSSRIGYRTLEVPSSRIVIIE 165 (660)
Q Consensus 106 ~~i~~vfq~p~l~d~~tl~e~L~~L~~--G------k~I~-------~-----PiyD~s~~~rs~~~~~~v~~a~VVIVE 165 (660)
+.+++++|++.+++ .++.+++..... + ..+. . ...+......++++.+++..++.++.+
T Consensus 91 ~~i~~v~q~~~~~~-~tv~enl~~~~~~~~~~~~~~~~~~~~l~~~~l~~~l~~~~~~~~~~LSgGq~qrv~laral~~~ 169 (264)
T PRK14243 91 RRIGMVFQKPNPFP-KSIYDNIAYGARINGYKGDMDELVERSLRQAALWDEVKDKLKQSGLSLSGGQQQRLCIARAIAVQ 169 (264)
T ss_pred hhEEEEccCCcccc-ccHHHHHHhhhhhcCcchHHHHHHHHHHHHhCchhhHHHHhcCCcccCCHHHHHHHHHHHHHhcC
Confidence 34789999998887 488888753211 1 0000 0 012223344566777788888899999
Q ss_pred cceeecccccCCCCE
Q 006117 166 GIYALSEKLRPLIDL 180 (660)
Q Consensus 166 GilaL~deLr~llDl 180 (660)
+.+++.||+...+|.
T Consensus 170 p~lllLDEPt~~LD~ 184 (264)
T PRK14243 170 PEVILMDEPCSALDP 184 (264)
T ss_pred CCEEEEeCCCccCCH
Confidence 999999999999997
No 278
>PRK15064 ABC transporter ATP-binding protein; Provisional
Probab=99.24 E-value=6.5e-12 Score=142.18 Aligned_cols=133 Identities=15% Similarity=0.106 Sum_probs=101.6
Q ss_pred ceeeeecCceEEEEecceeeccCCcceEEEEECCCCCcHHHHHHHHHHhC-CCceEEEecCcccccccccccCCCCCCCc
Q 006117 41 DTLSFEKGFFIVIRACQLLAQKNHGIILVGVAGPSGAGKTVFTEKVLNFM-PSIAVITMDNYNDSSRIIDGNFDDPRLTD 119 (660)
Q Consensus 41 ~~ls~~~g~~~vL~~Isl~i~~ge~~~IIGI~GpSGSGKSTLak~L~~lL-p~~g~I~lDg~~~~~~~i~~vfq~p~l~d 119 (660)
+++++.++...+++++||.+++|+ ++||+|+||||||||+++|++++ |+.|.|.+++. ..+++++|++.+++
T Consensus 5 ~~ls~~~~~~~il~~vsl~i~~Ge---~~~liG~NGsGKSTLl~~l~Gl~~p~~G~i~~~~~----~~i~~~~q~~~~~~ 77 (530)
T PRK15064 5 ANITMQFGAKPLFENISVKFGGGN---RYGLIGANGCGKSTFMKILGGDLEPSAGNVSLDPN----ERLGKLRQDQFAFE 77 (530)
T ss_pred EEEEEEeCCcEeEeCCEEEECCCC---EEEEECCCCCCHHHHHHHHhCCCCCCCceEEecCC----CEEEEEeccCCcCC
Confidence 455566666789999999999999 99999999999999999999998 78999998873 24788899888877
Q ss_pred hhhHHHHHHhhhc-------------C-----------------------------------ccccccc--ccccccccc
Q 006117 120 YDTLLENIRGLKE-------------G-----------------------------------KAVQVPI--YDFKSSSRI 149 (660)
Q Consensus 120 ~~tl~e~L~~L~~-------------G-----------------------------------k~I~~Pi--yD~s~~~rs 149 (660)
..++.+++..... + ..+..+. .+...+..+
T Consensus 78 ~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~~LS 157 (530)
T PRK15064 78 EFTVLDTVIMGHTELWEVKQERDRIYALPEMSEEDGMKVADLEVKFAEMDGYTAEARAGELLLGVGIPEEQHYGLMSEVA 157 (530)
T ss_pred CCcHHHHHHHhhHHHHHHHHHHHHHhcccccccchHHHHHHHHHHHHhcCchhHHHHHHHHHHhCCCChhHhcCchhhcC
Confidence 7777776642100 0 0011111 112234566
Q ss_pred cceeeecCCccEEEEecceeecccccCCCCE
Q 006117 150 GYRTLEVPSSRIVIIEGIYALSEKLRPLIDL 180 (660)
Q Consensus 150 ~~~~~~v~~a~VVIVEGilaL~deLr~llDl 180 (660)
+++.+++..+..++.++.+++.||+...+|.
T Consensus 158 gGq~qrv~lA~aL~~~p~lLlLDEPt~~LD~ 188 (530)
T PRK15064 158 PGWKLRVLLAQALFSNPDILLLDEPTNNLDI 188 (530)
T ss_pred HHHHHHHHHHHHHhcCCCEEEEcCCCcccCH
Confidence 7788888889999999999999999999997
No 279
>TIGR01184 ntrCD nitrate transport ATP-binding subunits C and D. This model describes the ATP binding subunits of nitrate transport in bacteria and archaea. This protein belongs to the ATP-binding cassette (ABC) superfamily. It is thought that the two subunits encoded by ntrC and ntrD form the binding surface for interaction with ATP. This model is restricted in identifying ATP binding subunit associated with the nitrate transport. Nitrate assimilation is aided by other proteins derived from the operon which among others include products of ntrA - a regulatory protein; ntrB - a hydropbobic transmembrane permease and narB - a reductase.
Probab=99.24 E-value=6.8e-12 Score=127.28 Aligned_cols=145 Identities=16% Similarity=0.137 Sum_probs=105.3
Q ss_pred EEecceeeccCCcceEEEEECCCCCcHHHHHHHHHHhC-CCceEEEecCccccc--ccccccCCCCCCCchhhHHHHHHh
Q 006117 53 IRACQLLAQKNHGIILVGVAGPSGAGKTVFTEKVLNFM-PSIAVITMDNYNDSS--RIIDGNFDDPRLTDYDTLLENIRG 129 (660)
Q Consensus 53 L~~Isl~i~~ge~~~IIGI~GpSGSGKSTLak~L~~lL-p~~g~I~lDg~~~~~--~~i~~vfq~p~l~d~~tl~e~L~~ 129 (660)
+++++|.+++|+ ++||+|+||||||||+++|++++ |..|.|.++|..... ...++++|++.+++..++.+++..
T Consensus 1 l~~is~~i~~Ge---~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~v~q~~~l~~~~tv~e~l~~ 77 (230)
T TIGR01184 1 LKGVNLTIQQGE---FISLIGHSGCGKSTLLNLISGLAQPTSGGVILEGKQITEPGPDRMVVFQNYSLLPWLTVRENIAL 77 (230)
T ss_pred CCceeEEEcCCC---EEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEECCCCChhheEEecCcccCCCCCHHHHHHH
Confidence 478999999999 99999999999999999999998 789999999875432 234789999998888899998754
Q ss_pred hh----cCc---c-----------ccc-ccccccccccccceeeecCCccEEEEecceeecccccCCCCEEEEEEcChhH
Q 006117 130 LK----EGK---A-----------VQV-PIYDFKSSSRIGYRTLEVPSSRIVIIEGIYALSEKLRPLIDLRVSVTGGVHF 190 (660)
Q Consensus 130 L~----~Gk---~-----------I~~-PiyD~s~~~rs~~~~~~v~~a~VVIVEGilaL~deLr~llDlkIfVdad~di 190 (660)
.. .+. . ... ...+......++++.+++..++.++.++.+++.||+...+|. ...
T Consensus 78 ~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgG~~qrv~la~al~~~p~lllLDEPt~gLD~-------~~~ 150 (230)
T TIGR01184 78 AVDRVLPDLSKSERRAIVEEHIALVGLTEAADKRPGQLSGGMKQRVAIARALSIRPKVLLLDEPFGALDA-------LTR 150 (230)
T ss_pred HHHhcccCCCHHHHHHHHHHHHHHcCCHHHHcCChhhCCHHHHHHHHHHHHHHcCCCEEEEcCCCcCCCH-------HHH
Confidence 21 110 0 001 112223344566777888888889999999999999999997 334
Q ss_pred HHHHHHHHHHHH-hCCCH
Q 006117 191 DLVKRVFRDIQR-VGQEP 207 (660)
Q Consensus 191 rLiRRI~RDv~e-RGrs~ 207 (660)
+.+..+.+...+ .|.+.
T Consensus 151 ~~l~~~l~~~~~~~~~ti 168 (230)
T TIGR01184 151 GNLQEELMQIWEEHRVTV 168 (230)
T ss_pred HHHHHHHHHHHHhcCCEE
Confidence 444454444433 25443
No 280
>PRK14266 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.24 E-value=1.8e-11 Score=125.23 Aligned_cols=137 Identities=17% Similarity=0.207 Sum_probs=102.3
Q ss_pred cceeeeecCceEEEEecceeeccCCcceEEEEECCCCCcHHHHHHHHHHhC---C---CceEEEecCcccc---------
Q 006117 40 EDTLSFEKGFFIVIRACQLLAQKNHGIILVGVAGPSGAGKTVFTEKVLNFM---P---SIAVITMDNYNDS--------- 104 (660)
Q Consensus 40 ~~~ls~~~g~~~vL~~Isl~i~~ge~~~IIGI~GpSGSGKSTLak~L~~lL---p---~~g~I~lDg~~~~--------- 104 (660)
.+++++.++...++++++|.+.+|+ ++||+|+||||||||+++|++++ | +.|.|.+||....
T Consensus 6 ~~~v~~~~~~~~~l~~~s~~i~~Ge---~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~v~~~g~~i~~~~~~~~~~ 82 (250)
T PRK14266 6 VENLNTYFDDAHILKNVNLDIPKNS---VTALIGPSGCGKSTFIRTLNRMNDLIPGFRHEGHIYLDGVDIYDPAVDVVEL 82 (250)
T ss_pred EEeEEEEeCCeEEEeeeEEEEcCCC---EEEEECCCCCCHHHHHHHHHhhhccCCCCCCccEEEECCEEcccccccHHHH
Confidence 3555565566679999999999999 99999999999999999999975 3 6899999997532
Q ss_pred cccccccCCCCCCCchhhHHHHHHhhhc--C----cccc-----------c-----ccccccccccccceeeecCCccEE
Q 006117 105 SRIIDGNFDDPRLTDYDTLLENIRGLKE--G----KAVQ-----------V-----PIYDFKSSSRIGYRTLEVPSSRIV 162 (660)
Q Consensus 105 ~~~i~~vfq~p~l~d~~tl~e~L~~L~~--G----k~I~-----------~-----PiyD~s~~~rs~~~~~~v~~a~VV 162 (660)
.+.+++++|++.+|+. ++.+++..... + .... . +..+......++++.+++..++.+
T Consensus 83 ~~~i~~~~q~~~~~~~-t~~~nl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~l~~~~~~~~~~LS~Gq~qrv~laral 161 (250)
T PRK14266 83 RKKVGMVFQKPNPFPK-SIFDNVAYGLRIHGEDDEDFIEERVEESLKAAALWDEVKDKLDKSALGLSGGQQQRLCIARTI 161 (250)
T ss_pred hhheEEEecCCccCcc-hHHHHHHhHHhhcCCCCHHHHHHHHHHHHHHcCCchhHHHHHhCCcccCCHHHHHHHHHHHHH
Confidence 1347899999988874 88888863211 1 0000 0 111222334555677778888888
Q ss_pred EEecceeecccccCCCCE
Q 006117 163 IIEGIYALSEKLRPLIDL 180 (660)
Q Consensus 163 IVEGilaL~deLr~llDl 180 (660)
+..+.+++.||+...+|.
T Consensus 162 ~~~p~llllDEP~~gLD~ 179 (250)
T PRK14266 162 AVSPEVILMDEPCSALDP 179 (250)
T ss_pred HcCCCEEEEcCCCccCCH
Confidence 999999999999999997
No 281
>PRK14265 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.23 E-value=1.5e-11 Score=128.29 Aligned_cols=137 Identities=16% Similarity=0.164 Sum_probs=101.9
Q ss_pred cceeeeecCceEEEEecceeeccCCcceEEEEECCCCCcHHHHHHHHHHhC-C-----CceEEEecCcccc---------
Q 006117 40 EDTLSFEKGFFIVIRACQLLAQKNHGIILVGVAGPSGAGKTVFTEKVLNFM-P-----SIAVITMDNYNDS--------- 104 (660)
Q Consensus 40 ~~~ls~~~g~~~vL~~Isl~i~~ge~~~IIGI~GpSGSGKSTLak~L~~lL-p-----~~g~I~lDg~~~~--------- 104 (660)
.+++++.++...++++++|.+++|+ +++|+|+||||||||+++|++++ + ..|.|.++|....
T Consensus 23 ~~nl~~~~~~~~~l~~vs~~i~~Ge---~~~IiG~nGsGKSTLl~~l~Gl~~~~~~~~~~G~i~~~g~~l~~~~~~~~~~ 99 (274)
T PRK14265 23 VEGVKVFYGGFLALVDVHLKIPAKK---IIAFIGPSGCGKSTLLRCFNRMNDLIPGAKVEGRLLYRDRNIYDSQINSVKL 99 (274)
T ss_pred EeeEEEEeCCeEEEeeeeeEEcCCC---EEEEECCCCCCHHHHHHHHhcccccccCCCcCceEEECCEecccccchhHHH
Confidence 3555566666789999999999999 99999999999999999999986 2 4899999986431
Q ss_pred cccccccCCCCCCCchhhHHHHHHhhhc--Cc------c-------ccc-----ccccccccccccceeeecCCccEEEE
Q 006117 105 SRIIDGNFDDPRLTDYDTLLENIRGLKE--GK------A-------VQV-----PIYDFKSSSRIGYRTLEVPSSRIVII 164 (660)
Q Consensus 105 ~~~i~~vfq~p~l~d~~tl~e~L~~L~~--Gk------~-------I~~-----PiyD~s~~~rs~~~~~~v~~a~VVIV 164 (660)
...++++||++.+++. ++.+++..... +. . ... ...+......++++.+++..++.++.
T Consensus 100 ~~~i~~v~q~~~l~~~-tv~~nl~~~~~~~~~~~~~~~~~~~~l~~~~l~~~l~~~~~~~~~~LSgGq~qrv~LAraL~~ 178 (274)
T PRK14265 100 RRQVGMVFQRPNPFPK-SIYENIAFAPRANGYKGNLDELVEDSLRRAAIWEEVKDKLKEKGTALSGGQQQRLCIARAIAM 178 (274)
T ss_pred hhcEEEEccCCccccc-cHHHHHHhHHHhcCchHHHHHHHHHHHHHcccchhhHHHhcCCcccCCHHHHHHHHHHHHHhh
Confidence 1357899999988864 88888753211 00 0 000 11222233455667778888888999
Q ss_pred ecceeecccccCCCCE
Q 006117 165 EGIYALSEKLRPLIDL 180 (660)
Q Consensus 165 EGilaL~deLr~llDl 180 (660)
++.+++.||+...+|.
T Consensus 179 ~p~lllLDEPt~~LD~ 194 (274)
T PRK14265 179 KPDVLLMDEPCSALDP 194 (274)
T ss_pred CCCEEEEeCCcccCCH
Confidence 9999999999999997
No 282
>cd03289 ABCC_CFTR2 The CFTR subfamily domain 2. The cystic fibrosis transmembrane regulator (CFTR), the product of the gene mutated in patients with cystic fibrosis, has adapted the ABC transporter structural motif to form a tightly regulated anion channel at the apical surface of many epithelia. Use of the term assembly of a functional ion channel implies the coming together of subunits or at least smaller not-yet functional components of the active whole. In fact, on the basis of current knowledge only the CFTR polypeptide itself is required to form an ATP- and protein kinase A-dependent low-conductance chloride channel of the type present in the apical membrane of many epithelial cells. CFTR displays the typical organization (IM-ABC)2 and carries a characteristic hydrophilic R-domain that separates IM1-ABC1 from IM2-ABC2.
Probab=99.23 E-value=9.9e-12 Score=130.20 Aligned_cols=136 Identities=16% Similarity=0.152 Sum_probs=100.1
Q ss_pred ceeeeec--CceEEEEecceeeccCCcceEEEEECCCCCcHHHHHHHHHHhCCCceEEEecCcccc-------ccccccc
Q 006117 41 DTLSFEK--GFFIVIRACQLLAQKNHGIILVGVAGPSGAGKTVFTEKVLNFMPSIAVITMDNYNDS-------SRIIDGN 111 (660)
Q Consensus 41 ~~ls~~~--g~~~vL~~Isl~i~~ge~~~IIGI~GpSGSGKSTLak~L~~lLp~~g~I~lDg~~~~-------~~~i~~v 111 (660)
+++++.+ +...+|++++|.+++|+ ++||+|+||||||||+++|+++++..|.|.+||.... .+.++++
T Consensus 6 ~nls~~~~~~~~~~l~~isl~I~~Ge---~~~IvG~nGsGKSTLl~~L~gl~~~~G~I~i~g~~i~~~~~~~lr~~i~~v 82 (275)
T cd03289 6 KDLTAKYTEGGNAVLENISFSISPGQ---RVGLLGRTGSGKSTLLSAFLRLLNTEGDIQIDGVSWNSVPLQKWRKAFGVI 82 (275)
T ss_pred EEEEEEeCCCCCcceeceEEEEcCCC---EEEEECCCCCCHHHHHHHHhhhcCCCcEEEECCEEhhhCCHHHHhhhEEEE
Confidence 3444444 44569999999999999 9999999999999999999999977899999997532 1357899
Q ss_pred CCCCCCCchhhHHHHHHhhhcCc---------cccc-------c-cccccc----cccccceeeecCCccEEEEecceee
Q 006117 112 FDDPRLTDYDTLLENIRGLKEGK---------AVQV-------P-IYDFKS----SSRIGYRTLEVPSSRIVIIEGIYAL 170 (660)
Q Consensus 112 fq~p~l~d~~tl~e~L~~L~~Gk---------~I~~-------P-iyD~s~----~~rs~~~~~~v~~a~VVIVEGilaL 170 (660)
+|++.+|+ .++.+|+....... .+.. | .+++.. ...++++.+++..++.++.++.+++
T Consensus 83 ~q~~~lf~-~tv~~nl~~~~~~~~~~~~~~l~~~gL~~~~~~~p~~l~~~~~~~g~~LS~G~~qrl~LaRall~~p~ill 161 (275)
T cd03289 83 PQKVFIFS-GTFRKNLDPYGKWSDEEIWKVAEEVGLKSVIEQFPGQLDFVLVDGGCVLSHGHKQLMCLARSVLSKAKILL 161 (275)
T ss_pred CCCcccch-hhHHHHhhhccCCCHHHHHHHHHHcCCHHHHHhCcccccceecCCCCCCCHHHHHHHHHHHHHhcCCCEEE
Confidence 99999987 48888885332100 0100 0 011111 1144566777788888999999999
Q ss_pred cccccCCCCE
Q 006117 171 SEKLRPLIDL 180 (660)
Q Consensus 171 ~deLr~llDl 180 (660)
.||+...+|.
T Consensus 162 lDEpts~LD~ 171 (275)
T cd03289 162 LDEPSAHLDP 171 (275)
T ss_pred EECccccCCH
Confidence 9999999987
No 283
>TIGR03719 ABC_ABC_ChvD ATP-binding cassette protein, ChvD family. Members of this protein family have two copies of the ABC transporter ATP-binding cassette, but are found outside the common ABC transporter operon structure that features integral membrane permease proteins and substrate-binding proteins encoded next to the ATP-binding cassette (ABC domain) protein. The member protein ChvD from Agrobacterium tumefaciens was identified as both a candidate to interact with VirB8, based on yeast two-hybrid analysis, and as an apparent regulator of VirG. The general function of this protein family is unknown.
Probab=99.23 E-value=1.3e-11 Score=140.65 Aligned_cols=134 Identities=16% Similarity=0.130 Sum_probs=104.3
Q ss_pred cceeeeecC-ceEEEEecceeeccCCcceEEEEECCCCCcHHHHHHHHHHhC-CCceEEEecCcccccccccccCCCCCC
Q 006117 40 EDTLSFEKG-FFIVIRACQLLAQKNHGIILVGVAGPSGAGKTVFTEKVLNFM-PSIAVITMDNYNDSSRIIDGNFDDPRL 117 (660)
Q Consensus 40 ~~~ls~~~g-~~~vL~~Isl~i~~ge~~~IIGI~GpSGSGKSTLak~L~~lL-p~~g~I~lDg~~~~~~~i~~vfq~p~l 117 (660)
.+++++.++ ...++++++|.+++|+ ++||+|+||||||||+++|++.+ |+.|.|.+++. ..+++++|++.+
T Consensus 7 ~~nls~~~~~~~~il~~is~~i~~Ge---~~~liG~NGsGKSTLl~~i~G~~~p~~G~i~~~~~----~~i~~v~Q~~~~ 79 (552)
T TIGR03719 7 MNRVSKVVPPKKEILKDISLSFFPGA---KIGVLGLNGAGKSTLLRIMAGVDKEFNGEARPAPG----IKVGYLPQEPQL 79 (552)
T ss_pred EeeEEEecCCCCeeecCceEEECCCC---EEEEECCCCCCHHHHHHHHhCCCCCCCceEEecCC----CEEEEEeccCCC
Confidence 345555555 5679999999999999 99999999999999999999998 78999988752 358899999998
Q ss_pred CchhhHHHHHHh-hhc---------------C---cc---------------------------------cccccccccc
Q 006117 118 TDYDTLLENIRG-LKE---------------G---KA---------------------------------VQVPIYDFKS 145 (660)
Q Consensus 118 ~d~~tl~e~L~~-L~~---------------G---k~---------------------------------I~~PiyD~s~ 145 (660)
++..++.+++.. +.. + .. ...+..+...
T Consensus 80 ~~~~tv~e~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~ 159 (552)
T TIGR03719 80 DPTKTVRENVEEGVAEIKDALDRFNEISAKFAEPDADMDALLAEQAELQEIIDAADAWDLDRKLEIAMDALRCPPWDADV 159 (552)
T ss_pred CCCCcHHHHHHHhhHHHHHHHHHHHHHHHHhccCchhhHHHHHHHHHHHHHHHhcCcchhHHHHHHHHhhCCCCcccCch
Confidence 888888888753 110 0 00 0001123344
Q ss_pred cccccceeeecCCccEEEEecceeecccccCCCCE
Q 006117 146 SSRIGYRTLEVPSSRIVIIEGIYALSEKLRPLIDL 180 (660)
Q Consensus 146 ~~rs~~~~~~v~~a~VVIVEGilaL~deLr~llDl 180 (660)
+..++++..++..+..++.++.+++.||+...+|.
T Consensus 160 ~~LSgGqkqrv~la~al~~~p~lLLLDEPt~~LD~ 194 (552)
T TIGR03719 160 TKLSGGERRRVALCRLLLSKPDMLLLDEPTNHLDA 194 (552)
T ss_pred hhcCHHHHHHHHHHHHHhcCCCEEEEcCCCCCCCh
Confidence 55667788888889999999999999999999997
No 284
>TIGR03797 NHPM_micro_ABC2 NHPM bacteriocin system ABC transporter, ATP-binding protein. Members of this protein family are ABC transporter ATP-binding subunits, part of a three-gene putative bacteriocin transport operon. The other subunits include another ATP-binding subunit (TIGR03796), which has an N-terminal propeptide cleavage domain, and an HlyD homolog (TIGR03794). In a number of genomes, a conserved propeptide sequence with a classic Gly-Gly motif
Probab=99.23 E-value=6.6e-12 Score=146.24 Aligned_cols=137 Identities=20% Similarity=0.310 Sum_probs=106.3
Q ss_pred cceeeeec--CceEEEEecceeeccCCcceEEEEECCCCCcHHHHHHHHHHhC-CCceEEEecCccccc-------cccc
Q 006117 40 EDTLSFEK--GFFIVIRACQLLAQKNHGIILVGVAGPSGAGKTVFTEKVLNFM-PSIAVITMDNYNDSS-------RIID 109 (660)
Q Consensus 40 ~~~ls~~~--g~~~vL~~Isl~i~~ge~~~IIGI~GpSGSGKSTLak~L~~lL-p~~g~I~lDg~~~~~-------~~i~ 109 (660)
-++++|.+ +...+|+++||.+++|+ .++|+|+||||||||++.|++++ |..|.|.+||.+... +.++
T Consensus 454 ~~nvsf~Y~~~~~~vL~~isl~i~~Ge---~vaIvG~sGsGKSTLlklL~gl~~p~~G~I~idg~~i~~~~~~~lr~~i~ 530 (686)
T TIGR03797 454 VDRVTFRYRPDGPLILDDVSLQIEPGE---FVAIVGPSGSGKSTLLRLLLGFETPESGSVFYDGQDLAGLDVQAVRRQLG 530 (686)
T ss_pred EEEEEEEcCCCCccceeeeEEEECCCC---EEEEECCCCCCHHHHHHHHhCCCCCCCCEEEECCEEcCcCCHHHHHhccE
Confidence 34555655 24579999999999999 99999999999999999999998 899999999975432 4689
Q ss_pred ccCCCCCCCchhhHHHHHHhhhc-------------C--ccc-ccc-cccccc----cccccceeeecCCccEEEEecce
Q 006117 110 GNFDDPRLTDYDTLLENIRGLKE-------------G--KAV-QVP-IYDFKS----SSRIGYRTLEVPSSRIVIIEGIY 168 (660)
Q Consensus 110 ~vfq~p~l~d~~tl~e~L~~L~~-------------G--k~I-~~P-iyD~s~----~~rs~~~~~~v~~a~VVIVEGil 168 (660)
+++|++.+|+ .++++|+..... + +.+ ..| -||-.. ...++++.+++..++.++-++.+
T Consensus 531 ~v~Q~~~lf~-gTI~eNi~~~~~~~~e~i~~al~~a~l~~~i~~lp~G~dt~ige~G~~LSGGQrQRialARAll~~p~i 609 (686)
T TIGR03797 531 VVLQNGRLMS-GSIFENIAGGAPLTLDEAWEAARMAGLAEDIRAMPMGMHTVISEGGGTLSGGQRQRLLIARALVRKPRI 609 (686)
T ss_pred EEccCCccCc-ccHHHHHhcCCCCCHHHHHHHHHHcCcHHHHHhccccccccccCCCCCCCHHHHHHHHHHHHHhcCCCE
Confidence 9999999987 588888864321 0 011 112 123222 23466788899999999999999
Q ss_pred eecccccCCCCE
Q 006117 169 ALSEKLRPLIDL 180 (660)
Q Consensus 169 aL~deLr~llDl 180 (660)
++.||+...+|.
T Consensus 610 LiLDEpTS~LD~ 621 (686)
T TIGR03797 610 LLFDEATSALDN 621 (686)
T ss_pred EEEeCCccCCCH
Confidence 999999999986
No 285
>PRK11174 cysteine/glutathione ABC transporter membrane/ATP-binding component; Reviewed
Probab=99.23 E-value=5.9e-12 Score=143.87 Aligned_cols=136 Identities=16% Similarity=0.191 Sum_probs=105.7
Q ss_pred ceeeee-cCceEEEEecceeeccCCcceEEEEECCCCCcHHHHHHHHHHhCCCceEEEecCccccc-------ccccccC
Q 006117 41 DTLSFE-KGFFIVIRACQLLAQKNHGIILVGVAGPSGAGKTVFTEKVLNFMPSIAVITMDNYNDSS-------RIIDGNF 112 (660)
Q Consensus 41 ~~ls~~-~g~~~vL~~Isl~i~~ge~~~IIGI~GpSGSGKSTLak~L~~lLp~~g~I~lDg~~~~~-------~~i~~vf 112 (660)
++++|. ++...+|++++|.+++|+ .++|+|+||||||||++.|++++|..|.|.+||.+... +.+++++
T Consensus 353 ~~vsf~~~~~~~vL~~i~l~i~~G~---~vaIvG~SGsGKSTL~~lL~g~~p~~G~I~i~g~~i~~~~~~~lr~~i~~v~ 429 (588)
T PRK11174 353 EDLEILSPDGKTLAGPLNFTLPAGQ---RIALVGPSGAGKTSLLNALLGFLPYQGSLKINGIELRELDPESWRKHLSWVG 429 (588)
T ss_pred EeeEEeccCCCeeeeeeEEEEcCCC---EEEEECCCCCCHHHHHHHHhcCCCCCcEEEECCEecccCCHHHHHhheEEec
Confidence 445432 234579999999999999 99999999999999999999999889999999975432 4689999
Q ss_pred CCCCCCchhhHHHHHHhhhcC---c-------------cc-ccc-ccccccc----ccccceeeecCCccEEEEecceee
Q 006117 113 DDPRLTDYDTLLENIRGLKEG---K-------------AV-QVP-IYDFKSS----SRIGYRTLEVPSSRIVIIEGIYAL 170 (660)
Q Consensus 113 q~p~l~d~~tl~e~L~~L~~G---k-------------~I-~~P-iyD~s~~----~rs~~~~~~v~~a~VVIVEGilaL 170 (660)
|+|.+|+ .++++|+...... + .+ ..| -||-..+ ..++++.+++..++.++-++..++
T Consensus 430 Q~~~LF~-~TI~eNI~~g~~~~~~eei~~al~~a~l~~~i~~lp~G~dT~vge~G~~LSGGQrQRialARAll~~~~Ili 508 (588)
T PRK11174 430 QNPQLPH-GTLRDNVLLGNPDASDEQLQQALENAWVSEFLPLLPQGLDTPIGDQAAGLSVGQAQRLALARALLQPCQLLL 508 (588)
T ss_pred CCCcCCC-cCHHHHhhcCCCCCCHHHHHHHHHHhCHHHHHHhcccccccccccCCCCCCHHHHHHHHHHHHHhcCCCEEE
Confidence 9999997 5899998654211 0 01 112 2333222 246678899999999999999999
Q ss_pred cccccCCCCE
Q 006117 171 SEKLRPLIDL 180 (660)
Q Consensus 171 ~deLr~llDl 180 (660)
.||+...+|.
T Consensus 509 LDE~TSaLD~ 518 (588)
T PRK11174 509 LDEPTASLDA 518 (588)
T ss_pred EeCCccCCCH
Confidence 9999999997
No 286
>COG1123 ATPase components of various ABC-type transport systems, contain duplicated ATPase [General function prediction only]
Probab=99.22 E-value=4.3e-11 Score=134.52 Aligned_cols=206 Identities=15% Similarity=0.251 Sum_probs=140.6
Q ss_pred ceeeeeccceeeeecCceEEEEecceeeccCCcceEEEEECCCCCcHHHHHHHHHHhCC-C----ceEEEecCcccc---
Q 006117 33 RYEIVPIEDTLSFEKGFFIVIRACQLLAQKNHGIILVGVAGPSGAGKTVFTEKVLNFMP-S----IAVITMDNYNDS--- 104 (660)
Q Consensus 33 ~~ei~~~~~~ls~~~g~~~vL~~Isl~i~~ge~~~IIGI~GpSGSGKSTLak~L~~lLp-~----~g~I~lDg~~~~--- 104 (660)
+.++.++...|....+...++++|||.+.+|+ ++||+|.|||||||++..|.+++| . .|.|.++|.+..
T Consensus 5 lL~V~nL~v~~~~~~~~~~~v~~vsf~v~~GE---~lgIvGESGsGKSt~a~~i~gll~~~~~~~~G~I~~~g~dl~~l~ 81 (539)
T COG1123 5 LLEVENLTVEFATDGGRVPAVRDVSFEVEPGE---ILGIVGESGSGKSTLALALMGLLPEGGRITSGEVILDGRDLLGLS 81 (539)
T ss_pred eEEEeceEEEEecCCcceeeeecceEEecCCc---EEEEEcCCCCCHHHHHHHHhccCCCCCcccceEEEECCcchhcCC
Confidence 55666666677656455689999999999999 999999999999999999999994 3 699999986321
Q ss_pred --------cccccccCCCCC--CCchhhHHHHHHhhhc--C---------------cc--cccccc-cccccccccceee
Q 006117 105 --------SRIIDGNFDDPR--LTDYDTLLENIRGLKE--G---------------KA--VQVPIY-DFKSSSRIGYRTL 154 (660)
Q Consensus 105 --------~~~i~~vfq~p~--l~d~~tl~e~L~~L~~--G---------------k~--I~~Piy-D~s~~~rs~~~~~ 154 (660)
.+.++++||+|. +.+..++.+.+..... + +. +..|.. +...|+.++++.+
T Consensus 82 ~~~~r~~rg~~Ia~i~Q~p~~slnP~~tIg~Qi~E~~~~h~~~~~~ea~~~a~elL~~Vgl~~~~~~~~yPheLSGG~rQ 161 (539)
T COG1123 82 EREMRKLRGKRIAMIFQDPMTSLNPVMTIGDQIREALRLHGKGSRAEARKRAVELLEQVGLPDPERRDRYPHQLSGGMRQ 161 (539)
T ss_pred HHHHHHhccccEEEEecCchhhcCchhhHHHHHHHHHHHhccccHHHHHHHHHHHHHHcCCCChhhhccCCcccCchHHH
Confidence 145889999974 3444677776654221 0 11 222322 4578888999988
Q ss_pred ecCCccEEEEecceeecccccCCCCEEEEEEcChhHHHHHHHHHHHH-HhCCCHHHHHHHHHhccccchhhcccCCcCcC
Q 006117 155 EVPSSRIVIIEGIYALSEKLRPLIDLRVSVTGGVHFDLVKRVFRDIQ-RVGQEPEEIIHQISETVYPMYKAFIEPDLQTA 233 (660)
Q Consensus 155 ~v~~a~VVIVEGilaL~deLr~llDlkIfVdad~dirLiRRI~RDv~-eRGrs~E~Vl~qy~~~v~P~~~~fIeP~k~~A 233 (660)
++-.+..+..++.+++.||+.-.+|.. -...+-.+.++.. +.|.+
T Consensus 162 Rv~iAmALa~~P~LLIaDEPTTaLDvt-------~q~qIL~llk~l~~e~g~a--------------------------- 207 (539)
T COG1123 162 RVMIAMALALKPKLLIADEPTTALDVT-------TQAQILDLLKDLQRELGMA--------------------------- 207 (539)
T ss_pred HHHHHHHHhCCCCEEEECCCccccCHH-------HHHHHHHHHHHHHHHcCcE---------------------------
Confidence 888888899999999999999999973 1112222223322 23433
Q ss_pred cEEEeCCCCCCCCCCCceEEeccCCCccHHHHHHHhcccccc
Q 006117 234 HIKIINKFNPFTGFQNPTYILKSTRPVTVDEIKAVMSKEHTE 275 (660)
Q Consensus 234 DiII~N~~~p~~g~~n~v~iLKsa~~v~~~~IravL~~~~~~ 275 (660)
=++|.++.......++.+.+++.+.-+..+..+++|.+....
T Consensus 208 ~l~ITHDl~Vva~~aDrv~Vm~~G~iVE~G~~~~i~~~p~hp 249 (539)
T COG1123 208 VLFITHDLGVVAELADRVVVMYKGEIVETGPTEEILSNPQHP 249 (539)
T ss_pred EEEEcCCHHHHHHhcCeEEEEECCEEEEecCHHHHHhccCCc
Confidence 344444544445555666666666666666677777654433
No 287
>PRK09580 sufC cysteine desulfurase ATPase component; Reviewed
Probab=99.22 E-value=1.8e-11 Score=124.69 Aligned_cols=137 Identities=12% Similarity=0.107 Sum_probs=96.0
Q ss_pred ceeeeecCceEEEEecceeeccCCcceEEEEECCCCCcHHHHHHHHHHhC---CCceEEEecCccccc--------cccc
Q 006117 41 DTLSFEKGFFIVIRACQLLAQKNHGIILVGVAGPSGAGKTVFTEKVLNFM---PSIAVITMDNYNDSS--------RIID 109 (660)
Q Consensus 41 ~~ls~~~g~~~vL~~Isl~i~~ge~~~IIGI~GpSGSGKSTLak~L~~lL---p~~g~I~lDg~~~~~--------~~i~ 109 (660)
+++++.++...++++++|.+++|+ +++|+|+||||||||+++|++++ |..|.|.++|..... ..++
T Consensus 5 ~nl~~~~~~~~~l~~isl~i~~Ge---~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~G~i~~~g~~~~~~~~~~~~~~~i~ 81 (248)
T PRK09580 5 KDLHVSVEDKAILRGLNLEVRPGE---VHAIMGPNGSGKSTLSATLAGREDYEVTGGTVEFKGKDLLELSPEDRAGEGIF 81 (248)
T ss_pred EEEEEEeCCeeeeecceeEEcCCC---EEEEECCCCCCHHHHHHHHcCCccCCCCceEEEECCCccccCCHHHHhhcceE
Confidence 455555566679999999999999 99999999999999999999993 689999999864321 2467
Q ss_pred ccCCCCCCCchhhHHHHHHhh----hc--C-c----------------ccccc-c-ccccc-cccccceeeecCCccEEE
Q 006117 110 GNFDDPRLTDYDTLLENIRGL----KE--G-K----------------AVQVP-I-YDFKS-SSRIGYRTLEVPSSRIVI 163 (660)
Q Consensus 110 ~vfq~p~l~d~~tl~e~L~~L----~~--G-k----------------~I~~P-i-yD~s~-~~rs~~~~~~v~~a~VVI 163 (660)
+++|++.+++..+...++... .. . . ....| . .+... +..++++..++..++.++
T Consensus 82 ~~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~LS~G~~qrv~laral~ 161 (248)
T PRK09580 82 MAFQYPVEIPGVSNQFFLQTALNAVRSYRGQEPLDRFDFQDLMEEKIALLKMPEDLLTRSVNVGFSGGEKKRNDILQMAV 161 (248)
T ss_pred EEecCchhccchhHHHHHHHhhhhhhcccccccchHHHHHHHHHHHHHHcCCChhhcccCCCCCCCHHHHHHHHHHHHHH
Confidence 888888766543332222110 00 0 0 00111 0 11111 145566777888888999
Q ss_pred EecceeecccccCCCCE
Q 006117 164 IEGIYALSEKLRPLIDL 180 (660)
Q Consensus 164 VEGilaL~deLr~llDl 180 (660)
-++.+++.||+...+|.
T Consensus 162 ~~p~illLDEPt~~LD~ 178 (248)
T PRK09580 162 LEPELCILDESDSGLDI 178 (248)
T ss_pred cCCCEEEEeCCCccCCH
Confidence 99999999999999997
No 288
>PRK14730 coaE dephospho-CoA kinase; Provisional
Probab=99.22 E-value=1.1e-11 Score=123.46 Aligned_cols=162 Identities=19% Similarity=0.191 Sum_probs=104.0
Q ss_pred eEEEEECCCCCcHHHHHHHHHHhCCCceEEEecCcccc----c----cc----cc-ccCCCCC-CCchhhHHHHHHh---
Q 006117 67 ILVGVAGPSGAGKTVFTEKVLNFMPSIAVITMDNYNDS----S----RI----ID-GNFDDPR-LTDYDTLLENIRG--- 129 (660)
Q Consensus 67 ~IIGI~GpSGSGKSTLak~L~~lLp~~g~I~lDg~~~~----~----~~----i~-~vfq~p~-l~d~~tl~e~L~~--- 129 (660)
.+|||+|+.||||||+++.|...+ +...++.|..... . .. .+ -+++..+ ..|...+.+.+..
T Consensus 2 ~~i~itG~~gsGKst~~~~l~~~~-g~~~i~~D~~~~~~~~~~~~~~~~l~~~fg~~i~~~~g~~idr~~L~~~vf~d~~ 80 (195)
T PRK14730 2 RRIGLTGGIASGKSTVGNYLAQQK-GIPILDADIYAREALAPGSPILKAILQRYGNKIIDPDGSELNRKALGEIIFNDPE 80 (195)
T ss_pred cEEEEECCCCCCHHHHHHHHHHhh-CCeEeeCcHHHHHHHhcCchHHHHHHHHhCHHhcCCCCCeeCHHHHHHHHhCCHH
Confidence 379999999999999999999976 4557777764210 0 00 11 1222233 3454444444321
Q ss_pred -hhcCcccccccccccccccccceeeecCCccEEEEecceeecccccCCCCEEEEEEcChhHHHHHHHHHHHHHhCCCHH
Q 006117 130 -LKEGKAVQVPIYDFKSSSRIGYRTLEVPSSRIVIIEGIYALSEKLRPLIDLRVSVTGGVHFDLVKRVFRDIQRVGQEPE 208 (660)
Q Consensus 130 -L~~Gk~I~~PiyD~s~~~rs~~~~~~v~~a~VVIVEGilaL~deLr~llDlkIfVdad~dirLiRRI~RDv~eRGrs~E 208 (660)
+..-+.+.+|..-........ ......++++|.++++...+...||.+|||++|.++++.|.+.|+ |.+.+
T Consensus 81 ~~~~l~~i~hP~i~~~~~~~~~----~~~~~~~vv~e~pll~E~~~~~~~D~ii~V~a~~e~r~~Rl~~R~----g~s~e 152 (195)
T PRK14730 81 ERRWLENLIHPYVRERFEEELA----QLKSNPIVVLVIPLLFEAKLTDLCSEIWVVDCSPEQQLQRLIKRD----GLTEE 152 (195)
T ss_pred HHHHHHHHHhHHHHHHHHHHHH----hcCCCCEEEEEeHHhcCcchHhCCCEEEEEECCHHHHHHHHHHcC----CCCHH
Confidence 111223445532222211111 112346899999999988888999999999999999877776664 88998
Q ss_pred HHHHHHHhccccchhhcccCCcCcCcEEEeCCCCC
Q 006117 209 EIIHQISETVYPMYKAFIEPDLQTAHIKIINKFNP 243 (660)
Q Consensus 209 ~Vl~qy~~~v~P~~~~fIeP~k~~ADiII~N~~~p 243 (660)
++..++... +| +++.+..||+||.|+.+.
T Consensus 153 ~~~~ri~~Q-~~-----~~~k~~~aD~vI~N~g~~ 181 (195)
T PRK14730 153 EAEARINAQ-WP-----LEEKVKLADVVLDNSGDL 181 (195)
T ss_pred HHHHHHHhC-CC-----HHHHHhhCCEEEECCCCH
Confidence 888777432 33 345678999999988755
No 289
>cd07758 ThTPase Thiamine Triphosphatase. ThTPase is a soluble cytosolic enzyme which converts thiamine triphosphate (ThTP) to thiamine diphosphate. This catalytic activity depends on a divalent metal cofactor, for example Mg++. ThTPase regulates the intracellular concentration of ThTP, maintaining it at a low concentration in vivo. ThTP acts as a messenger in cell signaling in response to cellular stress, and in addition, can phosphorylate proteins in certain tissues. There is another class of membrane-associated enzymes in animal tissues which also convert ThTP to thiamine diphosphate, however they do not belong to this subgroup. This subgroup belongs to the CYTH/triphosphate tunnel metalloenzyme (TTM)-like superfamily, whose enzymes have a unique active site located within an eight-stranded beta barrel.
Probab=99.22 E-value=1.3e-10 Score=116.37 Aligned_cols=135 Identities=16% Similarity=0.070 Sum_probs=101.6
Q ss_pred HHHHHHhccccc--c--cccceeeeeecCCCCCcccccceEEEeecCCeEEEEEeeeec---CCCceeeeeEEEEeeh--
Q 006117 263 DEIKAVMSKEHT--E--TTEETYDIYLLPPGEDPDACQSYLRMRNRDGKYNLMFEEWVT---DSPFIISPRITFEVSV-- 333 (660)
Q Consensus 263 ~~IravL~~~~~--~--~~~~~~DIYl~pP~~d~~~tde~LRvR~~dg~~~Ltykg~~~---d~~fi~rp~~efeV~v-- 333 (660)
+.+...|...+. . ....+.|+||..|+.++..++.|||+|.. ..+|+++++.. +.....+-+++.++..
T Consensus 11 ~~~~~~L~~~~~~~~~~~~~~~~d~YfDtp~~~l~~~~~~LRiR~~--~~~lk~~~~~~~~~~~~~~~~~E~~~~~~~~~ 88 (196)
T cd07758 11 PSAEERLRKLGALLELLGRRTFHDTYYDTPDNTLSLNDVWLRQRNG--QWELKIPPGGDPPTAGANTRYEELTGEAAIAA 88 (196)
T ss_pred HHHHHHHHhccCccCCCceEEEeeEEEeCCChhHHhCCcEEEEECC--eEEEEecCCCCCCCCCCcceEEecccHHHHHH
Confidence 345566654433 2 23345599999999999999999999964 78888887765 3334444444333321
Q ss_pred --------------hhHHHHhhcCCeEEEEEEEeeeEeecC-cEEEEeecccccCcceEEEEe------------ccHHH
Q 006117 334 --------------RLLGGLMALGYTIATILKRSSHIFYDD-RVCVKTDWLEQLNRKYVQVQG------------RDRLY 386 (660)
Q Consensus 334 --------------~~~~gL~~LGy~~aa~V~R~re~y~~g-~~~i~lD~ve~Lg~~FveI~g------------~~~~~ 386 (660)
.+.+.|..|||.+.+.+.|.|..|..+ +++|+||+++ +|..|+||+- .+++.
T Consensus 89 ~v~~~~~~~~~~~~~~~~~L~~lgf~~~~~~~k~R~~y~~~~g~~v~LD~~~-~G~~~~EiE~~v~~~~~~~~~~~a~~~ 167 (196)
T cd07758 89 ALRKLLGGALPSAGGLGDELANLGLREFASFVTKRESWKLDGAFRVDLDRTD-FGYSVGEVELLVEEEDNEAEVPAALAK 167 (196)
T ss_pred HHHHhcCCCCCcchhHHHHHhhCCCeEEEEEEEEEEEEEcCCCcEEEEeccc-CCcceEEEEEEEecccchhhHHHHHHH
Confidence 123688899999999999999999999 9999999999 7746999942 36778
Q ss_pred HHHHHHHcCCCCCc
Q 006117 387 VKYVGEQLGLDGSY 400 (660)
Q Consensus 387 v~~~~~~Lgl~G~~ 400 (660)
+.+++++||+.+.|
T Consensus 168 i~~~~~~lg~~~~~ 181 (196)
T cd07758 168 IDELISALMERYLW 181 (196)
T ss_pred HHHHHHHhCCCccc
Confidence 99999999999843
No 290
>cd03214 ABC_Iron-Siderophores_B12_Hemin ABC transporters, involved in the uptake of siderophores, heme, and vitamin B12, are widely conserved in bacteria and archaea. Only very few species lack representatives of the siderophore family transporters. The E. coli BtuCD protein is an ABC transporter mediating vitamin B12 uptake. The two ATP-binding cassettes (BtuD) are in close contact with each other, as are the two membrane-spanning subunits (BtuC); this arrangement is distinct from that observed for the E. coli lipid flippase MsbA. The BtuC subunits provide 20 transmembrane helices grouped around a translocation pathway that is closed to the cytoplasm by a gate region, whereas the dimer arrangement of the BtuD subunits resembles the ATP-bound form of the Rad50 DNA repair enzyme. A prominent cytoplasmic loop of BtuC forms the contact region with the ATP-binding cassette and represent a conserved motif among the ABC transporters.
Probab=99.22 E-value=1.1e-11 Score=121.02 Aligned_cols=119 Identities=24% Similarity=0.255 Sum_probs=86.7
Q ss_pred eeeeecCceEEEEecceeeccCCcceEEEEECCCCCcHHHHHHHHHHhC-CCceEEEecCccccc-------ccccccCC
Q 006117 42 TLSFEKGFFIVIRACQLLAQKNHGIILVGVAGPSGAGKTVFTEKVLNFM-PSIAVITMDNYNDSS-------RIIDGNFD 113 (660)
Q Consensus 42 ~ls~~~g~~~vL~~Isl~i~~ge~~~IIGI~GpSGSGKSTLak~L~~lL-p~~g~I~lDg~~~~~-------~~i~~vfq 113 (660)
++++.++...++++++|.+.+|+ +++|+|+||||||||+++|++++ |..|.|.+++..... ..++++||
T Consensus 4 ~l~~~~~~~~~l~~~~~~i~~G~---~~~l~G~nGsGKStLl~~i~G~~~~~~G~v~~~g~~~~~~~~~~~~~~i~~~~q 80 (180)
T cd03214 4 NLSVGYGGRTVLDDLSLSIEAGE---IVGILGPNGAGKSTLLKTLAGLLKPSSGEILLDGKDLASLSPKELARKIAYVPQ 80 (180)
T ss_pred EEEEEECCeeeEeeeEEEECCCC---EEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEECCcCCHHHHHHHHhHHHH
Confidence 34455555679999999999999 99999999999999999999998 789999999864421 12445554
Q ss_pred CCCCCchhhHHHHHHhhhcCcccccccccccccccccceeeecCCccEEEEecceeecccccCCCCE
Q 006117 114 DPRLTDYDTLLENIRGLKEGKAVQVPIYDFKSSSRIGYRTLEVPSSRIVIIEGIYALSEKLRPLIDL 180 (660)
Q Consensus 114 ~p~l~d~~tl~e~L~~L~~Gk~I~~PiyD~s~~~rs~~~~~~v~~a~VVIVEGilaL~deLr~llDl 180 (660)
.+..+.-.. ..+......++++.+++..++.++.++.+++.||+...+|.
T Consensus 81 ------------~l~~~gl~~-----~~~~~~~~LS~G~~qrl~laral~~~p~llllDEP~~~LD~ 130 (180)
T cd03214 81 ------------ALELLGLAH-----LADRPFNELSGGERQRVLLARALAQEPPILLLDEPTSHLDI 130 (180)
T ss_pred ------------HHHHcCCHh-----HhcCCcccCCHHHHHHHHHHHHHhcCCCEEEEeCCccCCCH
Confidence 111111001 11122334455667778888889999999999999999996
No 291
>TIGR03796 NHPM_micro_ABC1 NHPM bacteriocin system ABC transporter, peptidase/ATP-binding protein. This protein describes an multidomain ABC transporter subunit that is one of three protein families associated with some regularity with a distinctive family of putative bacteriocins. It includes a bacteriocin-processing peptidase domain at the N-terminus. Model TIGR03793 describes a conserved propeptide region for this bacteriocin family, unusual because it shows obvious homology a region of the enzyme nitrile hydratase up to the classic Gly-Gly cleavage motif. This family is therefore predicted to be a subunit of a bacteriocin processing and export system characteristic to this system that we designate NHPM, Nitrile Hydratase Propeptide Microcin.
Probab=99.21 E-value=5.2e-12 Score=147.53 Aligned_cols=137 Identities=18% Similarity=0.189 Sum_probs=106.3
Q ss_pred cceeeeecC--ceEEEEecceeeccCCcceEEEEECCCCCcHHHHHHHHHHhC-CCceEEEecCcccc-------ccccc
Q 006117 40 EDTLSFEKG--FFIVIRACQLLAQKNHGIILVGVAGPSGAGKTVFTEKVLNFM-PSIAVITMDNYNDS-------SRIID 109 (660)
Q Consensus 40 ~~~ls~~~g--~~~vL~~Isl~i~~ge~~~IIGI~GpSGSGKSTLak~L~~lL-p~~g~I~lDg~~~~-------~~~i~ 109 (660)
.++++|.++ ...+|+++||.+++|+ .|||+|+||||||||++.|++++ |..|.|.+||.+.. .+.++
T Consensus 480 ~~~vsf~y~~~~~~vL~~isl~i~~Ge---~vaIvG~sGsGKSTLlklL~gl~~p~~G~I~idg~~i~~~~~~~lr~~i~ 556 (710)
T TIGR03796 480 LRNITFGYSPLEPPLIENFSLTLQPGQ---RVALVGGSGSGKSTIAKLVAGLYQPWSGEILFDGIPREEIPREVLANSVA 556 (710)
T ss_pred EEEEEEecCCCCCCcccceeEEEcCCC---EEEEECCCCCCHHHHHHHHhcCCCCCCcEEEECCEeHHHCCHHHHHhhee
Confidence 355566554 3579999999999999 99999999999999999999998 89999999997543 25689
Q ss_pred ccCCCCCCCchhhHHHHHHhhhcC----------------ccc-ccc-cccccc----cccccceeeecCCccEEEEecc
Q 006117 110 GNFDDPRLTDYDTLLENIRGLKEG----------------KAV-QVP-IYDFKS----SSRIGYRTLEVPSSRIVIIEGI 167 (660)
Q Consensus 110 ~vfq~p~l~d~~tl~e~L~~L~~G----------------k~I-~~P-iyD~s~----~~rs~~~~~~v~~a~VVIVEGi 167 (660)
+++|++.+|+ .++++|+...... +.+ ..| .|+-.. ...++++.+++..++.++-++.
T Consensus 557 ~v~Q~~~lf~-gTi~eNi~l~~~~~~~~~i~~al~~~~l~~~i~~lp~gl~t~i~e~G~~LSGGQrQRiaLARall~~p~ 635 (710)
T TIGR03796 557 MVDQDIFLFE-GTVRDNLTLWDPTIPDADLVRACKDAAIHDVITSRPGGYDAELAEGGANLSGGQRQRLEIARALVRNPS 635 (710)
T ss_pred EEecCChhhh-ccHHHHhhCCCCCCCHHHHHHHHHHhCCHHHHHhCcCcccceeccCCCCCCHHHHHHHHHHHHHhhCCC
Confidence 9999999986 6899998643210 001 112 233222 2356678889999999999999
Q ss_pred eeecccccCCCCE
Q 006117 168 YALSEKLRPLIDL 180 (660)
Q Consensus 168 laL~deLr~llDl 180 (660)
+++.||+...+|.
T Consensus 636 iliLDEptS~LD~ 648 (710)
T TIGR03796 636 ILILDEATSALDP 648 (710)
T ss_pred EEEEECccccCCH
Confidence 9999999999986
No 292
>PRK13549 xylose transporter ATP-binding subunit; Provisional
Probab=99.21 E-value=1.4e-11 Score=138.82 Aligned_cols=149 Identities=12% Similarity=0.102 Sum_probs=110.0
Q ss_pred ceEEEEecceeeccCCcceEEEEECCCCCcHHHHHHHHHHhC-C-CceEEEecCcccc--------cccccccCCCC---
Q 006117 49 FFIVIRACQLLAQKNHGIILVGVAGPSGAGKTVFTEKVLNFM-P-SIAVITMDNYNDS--------SRIIDGNFDDP--- 115 (660)
Q Consensus 49 ~~~vL~~Isl~i~~ge~~~IIGI~GpSGSGKSTLak~L~~lL-p-~~g~I~lDg~~~~--------~~~i~~vfq~p--- 115 (660)
...++++++|.+++|+ ++||+|+||||||||+++|++++ | +.|.|.++|.... ...+++++|++
T Consensus 274 ~~~vl~~vsl~i~~Ge---~~~l~G~NGsGKSTLlk~i~Gl~~~~~~G~i~~~g~~~~~~~~~~~~~~~i~~v~q~~~~~ 350 (506)
T PRK13549 274 HIKRVDDVSFSLRRGE---ILGIAGLVGAGRTELVQCLFGAYPGRWEGEIFIDGKPVKIRNPQQAIAQGIAMVPEDRKRD 350 (506)
T ss_pred ccccccceeeEEcCCc---EEEEeCCCCCCHHHHHHHHhCCCCCCCCcEEEECCEECCCCCHHHHHHCCCEEeCcchhhC
Confidence 3568999999999999 99999999999999999999998 3 7999999986432 13478899986
Q ss_pred CCCchhhHHHHHHhh-----hc-C--c-------------ccccc--cccccccccccceeeecCCccEEEEecceeecc
Q 006117 116 RLTDYDTLLENIRGL-----KE-G--K-------------AVQVP--IYDFKSSSRIGYRTLEVPSSRIVIIEGIYALSE 172 (660)
Q Consensus 116 ~l~d~~tl~e~L~~L-----~~-G--k-------------~I~~P--iyD~s~~~rs~~~~~~v~~a~VVIVEGilaL~d 172 (660)
.+++..++.+++... .. + . .+... ..+...+..++++.+++..+..++.++.+++.|
T Consensus 351 ~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgG~kqrv~lA~al~~~p~lllLD 430 (506)
T PRK13549 351 GIVPVMGVGKNITLAALDRFTGGSRIDDAAELKTILESIQRLKVKTASPELAIARLSGGNQQKAVLAKCLLLNPKILILD 430 (506)
T ss_pred CCcCCCCHHHHhhhhhhhhhccCcccChHHHHHHHHHHHHhcCccCCCcccccccCCHHHHHHHHHHHHHhhCCCEEEEc
Confidence 466777888877421 00 0 0 01111 123334556778888899999999999999999
Q ss_pred cccCCCCEEEEEEcChhHHHHHHHHHHHHHhCCCH
Q 006117 173 KLRPLIDLRVSVTGGVHFDLVKRVFRDIQRVGQEP 207 (660)
Q Consensus 173 eLr~llDlkIfVdad~dirLiRRI~RDv~eRGrs~ 207 (660)
|+...+|. .....+.++.++..+.|.++
T Consensus 431 EPt~~LD~-------~~~~~l~~~l~~l~~~g~tv 458 (506)
T PRK13549 431 EPTRGIDV-------GAKYEIYKLINQLVQQGVAI 458 (506)
T ss_pred CCCCCcCH-------hHHHHHHHHHHHHHHCCCEE
Confidence 99999998 34455556666665556554
No 293
>COG3845 ABC-type uncharacterized transport systems, ATPase components [General function prediction only]
Probab=99.21 E-value=9e-12 Score=137.22 Aligned_cols=167 Identities=16% Similarity=0.125 Sum_probs=116.5
Q ss_pred eeeeeccceeeeecCceEEEEecceeeccCCcceEEEEECCCCCcHHHHHHHHHHhC-CCceEEEecCcccc--------
Q 006117 34 YEIVPIEDTLSFEKGFFIVIRACQLLAQKNHGIILVGVAGPSGAGKTVFTEKVLNFM-PSIAVITMDNYNDS-------- 104 (660)
Q Consensus 34 ~ei~~~~~~ls~~~g~~~vL~~Isl~i~~ge~~~IIGI~GpSGSGKSTLak~L~~lL-p~~g~I~lDg~~~~-------- 104 (660)
.++..+.+.| +.+.+.++|||.+.+|+ |.+|.|.||||||||+++|.+.+ |+.|.|.+||....
T Consensus 5 l~~~~itK~f----~~~~And~V~l~v~~Ge---IHaLLGENGAGKSTLm~iL~G~~~P~~GeI~v~G~~v~~~sP~dA~ 77 (501)
T COG3845 5 LEMRGITKRF----PGVVANDDVSLSVKKGE---IHALLGENGAGKSTLMKILFGLYQPDSGEIRVDGKEVRIKSPRDAI 77 (501)
T ss_pred EEEeccEEEc----CCEEecCceeeeecCCc---EEEEeccCCCCHHHHHHHHhCcccCCcceEEECCEEeccCCHHHHH
Confidence 3444555554 78999999999999999 99999999999999999999999 99999999998532
Q ss_pred cccccccCCCCCCCchhhHHHHHHhhhcCc------------ccc--ccccccc------ccccccceeeecCCccEEEE
Q 006117 105 SRIIDGNFDDPRLTDYDTLLENIRGLKEGK------------AVQ--VPIYDFK------SSSRIGYRTLEVPSSRIVII 164 (660)
Q Consensus 105 ~~~i~~vfq~p~l~d~~tl~e~L~~L~~Gk------------~I~--~PiyD~s------~~~rs~~~~~~v~~a~VVIV 164 (660)
...+++++||+.+++..|+.||+.--.... .+. ...|... .++.+-+++++++.-+.+.-
T Consensus 78 ~~GIGMVhQHF~Lv~~lTV~ENiiLg~e~~~~~~~~~~~~~~~i~~l~~~yGl~vdp~~~V~dLsVG~qQRVEIlKaLyr 157 (501)
T COG3845 78 RLGIGMVHQHFMLVPTLTVAENIILGLEPSKGGLIDRRQARARIKELSERYGLPVDPDAKVADLSVGEQQRVEILKALYR 157 (501)
T ss_pred HcCCcEEeeccccccccchhhhhhhcCccccccccCHHHHHHHHHHHHHHhCCCCCccceeecCCcchhHHHHHHHHHhc
Confidence 145899999999999999999986432210 000 0011111 12222234455555555555
Q ss_pred ecceeecccccCCCCEEEEEEcChhHHHHHHHHHHHHHhCCCHHHHHHHH
Q 006117 165 EGIYALSEKLRPLIDLRVSVTGGVHFDLVKRVFRDIQRVGQEPEEIIHQI 214 (660)
Q Consensus 165 EGilaL~deLr~llDlkIfVdad~dirLiRRI~RDv~eRGrs~E~Vl~qy 214 (660)
..-+++.||+...+ +|.+..-.-.+.|..++.|.+.--|.|.+
T Consensus 158 ~a~iLILDEPTaVL-------TP~E~~~lf~~l~~l~~~G~tIi~ITHKL 200 (501)
T COG3845 158 GARLLILDEPTAVL-------TPQEADELFEILRRLAAEGKTIIFITHKL 200 (501)
T ss_pred CCCEEEEcCCcccC-------CHHHHHHHHHHHHHHHHCCCEEEEEeccH
Confidence 55666667765544 45566555666777888899876665555
No 294
>PRK00081 coaE dephospho-CoA kinase; Reviewed
Probab=99.21 E-value=2.6e-11 Score=120.50 Aligned_cols=162 Identities=22% Similarity=0.235 Sum_probs=103.2
Q ss_pred ceEEEEECCCCCcHHHHHHHHHHhCCCceEEEecCcccc----c----cc----cc-ccCCCCCCCchhhHHHHHHh---
Q 006117 66 IILVGVAGPSGAGKTVFTEKVLNFMPSIAVITMDNYNDS----S----RI----ID-GNFDDPRLTDYDTLLENIRG--- 129 (660)
Q Consensus 66 ~~IIGI~GpSGSGKSTLak~L~~lLp~~g~I~lDg~~~~----~----~~----i~-~vfq~p~l~d~~tl~e~L~~--- 129 (660)
+.+|||+|+.||||||+++.|.. + +...|+.|..... . .. .+ -++...+.+|...+.+.+..
T Consensus 2 ~~~i~ltG~~gsGKst~~~~l~~-~-g~~~i~~D~~~~~~~~~~~~~~~~i~~~fg~~~~~~~g~idr~~L~~~vf~~~~ 79 (194)
T PRK00081 2 MLIIGLTGGIGSGKSTVANLFAE-L-GAPVIDADAIAHEVVEPGGPALQAIVEAFGPEILDADGELDRAKLRELVFSDPE 79 (194)
T ss_pred CeEEEEECCCCCCHHHHHHHHHH-c-CCEEEEecHHHHHHhhccHHHHHHHHHHhCHHhcCCCCCcCHHHHHHHHhCCHH
Confidence 46899999999999999999998 5 5668888865211 0 00 11 12222234555555554432
Q ss_pred -hhcCcccccccccccccccccceeeecCCccEEEEecceeecccccCCCCEEEEEEcChhHHHHHHHHHHHHHhCCCHH
Q 006117 130 -LKEGKAVQVPIYDFKSSSRIGYRTLEVPSSRIVIIEGIYALSEKLRPLIDLRVSVTGGVHFDLVKRVFRDIQRVGQEPE 208 (660)
Q Consensus 130 -L~~Gk~I~~PiyD~s~~~rs~~~~~~v~~a~VVIVEGilaL~deLr~llDlkIfVdad~dirLiRRI~RDv~eRGrs~E 208 (660)
+..-+.+.+|........... ......++++|+++++...+...||..|+|++|.+++..|-..| +|.+.+
T Consensus 80 ~~~~L~~i~hP~v~~~~~~~~~----~~~~~~~vv~e~pll~e~~~~~~~D~vi~V~a~~e~~~~Rl~~R----~~~s~e 151 (194)
T PRK00081 80 ARKKLEAILHPLIREEILEQLQ----EAESSPYVVLDIPLLFENGLEKLVDRVLVVDAPPETQLERLMAR----DGLSEE 151 (194)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH----HcccCCEEEEEehHhhcCCchhhCCeEEEEECCHHHHHHHHHHc----CCCCHH
Confidence 222234555543333222211 11123689999999999888899999999999988865544433 588888
Q ss_pred HHHHHHHhccccchhhcccCCcCcCcEEEeCCCCC
Q 006117 209 EIIHQISETVYPMYKAFIEPDLQTAHIKIINKFNP 243 (660)
Q Consensus 209 ~Vl~qy~~~v~P~~~~fIeP~k~~ADiII~N~~~p 243 (660)
++..++.. .+|. +.....||+||.|+.++
T Consensus 152 ~~~~ri~~-Q~~~-----~~~~~~ad~vI~N~g~~ 180 (194)
T PRK00081 152 EAEAIIAS-QMPR-----EEKLARADDVIDNNGDL 180 (194)
T ss_pred HHHHHHHH-hCCH-----HHHHHhCCEEEECCCCH
Confidence 87777643 3333 33457899999988654
No 295
>PRK14257 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.21 E-value=1.5e-11 Score=132.04 Aligned_cols=136 Identities=18% Similarity=0.207 Sum_probs=101.7
Q ss_pred ceeeeec--CceEEEEecceeeccCCcceEEEEECCCCCcHHHHHHHHHHhC------CCceEEEecCcccc--------
Q 006117 41 DTLSFEK--GFFIVIRACQLLAQKNHGIILVGVAGPSGAGKTVFTEKVLNFM------PSIAVITMDNYNDS-------- 104 (660)
Q Consensus 41 ~~ls~~~--g~~~vL~~Isl~i~~ge~~~IIGI~GpSGSGKSTLak~L~~lL------p~~g~I~lDg~~~~-------- 104 (660)
+++++.+ +...+|++++|.+++|+ ++||+|+||||||||+++|+++. |..|.|.+||....
T Consensus 84 ~nls~~y~~~~~~~L~~is~~I~~Ge---~v~IvG~~GsGKSTLl~~L~g~~~~~~~~p~~G~I~idG~~i~~~~~~~~~ 160 (329)
T PRK14257 84 RNFNFWYMNRTKHVLHDLNLDIKRNK---VTAFIGPSGCGKSTFLRNLNQLNDLIEGTSHEGEIYFLGTNTRSKKISSLE 160 (329)
T ss_pred EeeEEEecCCCceeeeeeEEEEcCCC---EEEEECCCCCCHHHHHHHHhccccccCCCCCceEEEECCEEccccccchHh
Confidence 4444444 34569999999999999 99999999999999999999987 25899999998642
Q ss_pred -cccccccCCCCCCCchhhHHHHHHhhh--cC---cc------------ccc-----ccccccccccccceeeecCCccE
Q 006117 105 -SRIIDGNFDDPRLTDYDTLLENIRGLK--EG---KA------------VQV-----PIYDFKSSSRIGYRTLEVPSSRI 161 (660)
Q Consensus 105 -~~~i~~vfq~p~l~d~~tl~e~L~~L~--~G---k~------------I~~-----PiyD~s~~~rs~~~~~~v~~a~V 161 (660)
...++++||+|.+|+ .++.+|+.... .+ .. ... ...+......++++.+++..++.
T Consensus 161 lr~~i~~v~q~~~~~~-~ti~eNi~~~~~~~~~~~~~~~~~~~~~~l~~~~L~~~l~~~~~~~~~~LSgGqkqRl~LARA 239 (329)
T PRK14257 161 LRTRIGMVFQKPTPFE-MSIFDNVAYGPRNNGINDRKILEKIVEKSLKSAALWDEVKDDLDKAGNALSGGQQQRLCIARA 239 (329)
T ss_pred hhccEEEEecCCccCC-CcHHHHHHhHHHhcCCChHHHHHHHHHHHHHHcCCcchhhhhhhCCcccCCHHHHHHHHHHHH
Confidence 235789999999886 68888886321 10 00 000 01122233455678888888899
Q ss_pred EEEecceeecccccCCCCE
Q 006117 162 VIIEGIYALSEKLRPLIDL 180 (660)
Q Consensus 162 VIVEGilaL~deLr~llDl 180 (660)
++-+..+++.||+...+|.
T Consensus 240 l~~~p~IlLLDEPts~LD~ 258 (329)
T PRK14257 240 IALEPEVLLMDEPTSALDP 258 (329)
T ss_pred HHhCCCEEEEeCCcccCCH
Confidence 9999999999999999986
No 296
>KOG2702 consensus Predicted panthothenate kinase/uridine kinase-related protein [Nucleotide transport and metabolism; Coenzyme transport and metabolism]
Probab=99.21 E-value=3.1e-11 Score=122.09 Aligned_cols=169 Identities=22% Similarity=0.222 Sum_probs=125.4
Q ss_pred eEEEEECCCCCcHHHHHHHHHHhCC------------CceEEEecCcccccccccc---------cCCCCCCCchhhHHH
Q 006117 67 ILVGVAGPSGAGKTVFTEKVLNFMP------------SIAVITMDNYNDSSRIIDG---------NFDDPRLTDYDTLLE 125 (660)
Q Consensus 67 ~IIGI~GpSGSGKSTLak~L~~lLp------------~~g~I~lDg~~~~~~~i~~---------vfq~p~l~d~~tl~e 125 (660)
.++|++|+.|+||||++..+....| -+-+|.||||+...+.... .-..|..||...+.+
T Consensus 120 ~l~glag~pGtgkst~~a~v~~aWp~~~~~f~~e~i~iaiivPMDGFHlsr~~LD~f~dP~~AharRGapwTFD~~lfl~ 199 (323)
T KOG2702|consen 120 ELTGLAGRPGTGKSTRIAAVDNAWPVNVNKFAQESINIAIIVPMDGFHLSRRCLDLFKDPQTAHARRGAPWTFDSNLFLQ 199 (323)
T ss_pred heeeeecCCCCcchhHHHHHHhhcchhhhhhhhhhcceeEEecccchhhhHHHHHhhcChHHHHhhcCCCcccCHHHHHH
Confidence 4999999999999999999988542 1245889999765433221 123466789888888
Q ss_pred HHHhhh--cCcccccccccccccccccceeeecCCccEEEEecceeecc-----cccCCCCEEEEEEcChhHHHHHHHHH
Q 006117 126 NIRGLK--EGKAVQVPIYDFKSSSRIGYRTLEVPSSRIVIIEGIYALSE-----KLRPLIDLRVSVTGGVHFDLVKRVFR 198 (660)
Q Consensus 126 ~L~~L~--~Gk~I~~PiyD~s~~~rs~~~~~~v~~a~VVIVEGilaL~d-----eLr~llDlkIfVdad~dirLiRRI~R 198 (660)
.+..++ .-..+..|.||+..++.+..........+|||+||.|++++ .+.+++|.++|++.+.+....|--.|
T Consensus 200 l~k~lkk~t~~~iyvPsFdHa~gDPv~DdicVs~~~rIvI~EGnYlLl~~~~Wkdi~k~~d~k~~idV~~~~a~~RVa~R 279 (323)
T KOG2702|consen 200 LCKILKKTTIPDIYVPSFDHALGDPVPDDICVSKFTRIVILEGNYLLLDQENWKDIYKTLDDKYKIDVDYEAAEERVAKR 279 (323)
T ss_pred HHHHHhhcCCCceeccccccccCCCCccceeecccceEEEEeccEEEecCccHHHHHHHhhhheeccccHHHHHHHHHHH
Confidence 888887 45679999999999998887766667789999999999985 36789999999999988866544444
Q ss_pred HHHHhC--CCHHHHHHHHHhccccchhhcccCCcCcCcEEE
Q 006117 199 DIQRVG--QEPEEIIHQISETVYPMYKAFIEPDLQTAHIKI 237 (660)
Q Consensus 199 Dv~eRG--rs~E~Vl~qy~~~v~P~~~~fIeP~k~~ADiII 237 (660)
+...| .++++...++....++.- ++|+..+-.+|.||
T Consensus 280 -Hl~sGl~~t~~ea~er~d~ND~~N~-~~I~k~~i~~D~iv 318 (323)
T KOG2702|consen 280 -HLQSGLVTTIAEARERFDSNDLLNG-RDIDKHLIKVDNIV 318 (323)
T ss_pred -hhcccccCCHHHHHhhcccccccch-HHHHhcccchHHHH
Confidence 44557 678887777766655553 34555555555554
No 297
>PRK10418 nikD nickel transporter ATP-binding protein NikD; Provisional
Probab=99.20 E-value=2.2e-11 Score=125.24 Aligned_cols=136 Identities=16% Similarity=0.252 Sum_probs=97.1
Q ss_pred ceeeeecCceEEEEecceeeccCCcceEEEEECCCCCcHHHHHHHHHHhC-C----CceEEEecCcccc-----cccccc
Q 006117 41 DTLSFEKGFFIVIRACQLLAQKNHGIILVGVAGPSGAGKTVFTEKVLNFM-P----SIAVITMDNYNDS-----SRIIDG 110 (660)
Q Consensus 41 ~~ls~~~g~~~vL~~Isl~i~~ge~~~IIGI~GpSGSGKSTLak~L~~lL-p----~~g~I~lDg~~~~-----~~~i~~ 110 (660)
+++++.+ ...++++++|.+.+|+ +++|+|+||||||||+++|++++ | +.|.|.++|.... .+.+++
T Consensus 8 ~~l~~~~-~~~il~~vsl~i~~Ge---~~~l~G~nGsGKSTLl~~l~Gl~~~~~~~~~G~i~~~g~~i~~~~~~~~~i~~ 83 (254)
T PRK10418 8 RNIALQA-AQPLVHGVSLTLQRGR---VLALVGGSGSGKSLTCAAALGILPAGVRQTAGRVLLDGKPVAPCALRGRKIAT 83 (254)
T ss_pred eCeEEEe-ccceecceEEEEcCCC---EEEEECCCCCCHHHHHHHHhCCCCCCCCCcCCEEEECCeeccccccccceEEE
Confidence 3444444 3468999999999999 99999999999999999999998 6 7899999986532 135788
Q ss_pred cCCCCC-CC-chhhHHHHHHhhh--cCc------------ccccc----cccccccccccceeeecCCccEEEEecceee
Q 006117 111 NFDDPR-LT-DYDTLLENIRGLK--EGK------------AVQVP----IYDFKSSSRIGYRTLEVPSSRIVIIEGIYAL 170 (660)
Q Consensus 111 vfq~p~-l~-d~~tl~e~L~~L~--~Gk------------~I~~P----iyD~s~~~rs~~~~~~v~~a~VVIVEGilaL 170 (660)
+||++. .| +..++.+++.... .+. .+..+ ..+......++++.+++..++.++.++.+++
T Consensus 84 v~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~LS~Gq~qrv~laral~~~p~lLl 163 (254)
T PRK10418 84 IMQNPRSAFNPLHTMHTHARETCLALGKPADDATLTAALEAVGLENAARVLKLYPFEMSGGMLQRMMIALALLCEAPFII 163 (254)
T ss_pred EecCCccccCccccHHHHHHHHHHHcCCChHHHHHHHHHHHcCCCChhhhhhcCCcccCHHHHHHHHHHHHHhcCCCEEE
Confidence 999875 23 3344444443210 010 01111 1233344556677788888899999999999
Q ss_pred cccccCCCCE
Q 006117 171 SEKLRPLIDL 180 (660)
Q Consensus 171 ~deLr~llDl 180 (660)
.||+...+|.
T Consensus 164 LDEPt~~LD~ 173 (254)
T PRK10418 164 ADEPTTDLDV 173 (254)
T ss_pred EeCCCcccCH
Confidence 9999999996
No 298
>PRK14260 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.20 E-value=2.9e-11 Score=124.67 Aligned_cols=137 Identities=19% Similarity=0.174 Sum_probs=103.2
Q ss_pred cceeeeecCceEEEEecceeeccCCcceEEEEECCCCCcHHHHHHHHHHhCC------CceEEEecCcccc---------
Q 006117 40 EDTLSFEKGFFIVIRACQLLAQKNHGIILVGVAGPSGAGKTVFTEKVLNFMP------SIAVITMDNYNDS--------- 104 (660)
Q Consensus 40 ~~~ls~~~g~~~vL~~Isl~i~~ge~~~IIGI~GpSGSGKSTLak~L~~lLp------~~g~I~lDg~~~~--------- 104 (660)
.+++++.++...++++++|.+.+|+ ++||+|+||||||||+++|+++++ ..|.|.++|....
T Consensus 10 ~~~l~~~~~~~~il~~isl~i~~Ge---~~~l~G~nGsGKSTLlk~l~Gl~~~~~~~~~~G~i~~~g~~i~~~~~~~~~~ 86 (259)
T PRK14260 10 VKDLSFYYNTSKAIEGISMDIYRNK---VTAIIGPSGCGKSTFIKTLNRISELEGPVKVEGVVDFFGQNIYDPRININRL 86 (259)
T ss_pred EEEEEEEECCeEeecceEEEEcCCC---EEEEECCCCCCHHHHHHHHHhhcCcccCCccceEEEECCEeccccccchHhh
Confidence 4556666666789999999999999 999999999999999999999973 3799999986431
Q ss_pred cccccccCCCCCCCchhhHHHHHHhhh--cC----cc----c-------cc-----ccccccccccccceeeecCCccEE
Q 006117 105 SRIIDGNFDDPRLTDYDTLLENIRGLK--EG----KA----V-------QV-----PIYDFKSSSRIGYRTLEVPSSRIV 162 (660)
Q Consensus 105 ~~~i~~vfq~p~l~d~~tl~e~L~~L~--~G----k~----I-------~~-----PiyD~s~~~rs~~~~~~v~~a~VV 162 (660)
...+++++|++.+|+ .++.+++.... .+ .. + .. ...+......++++..++..++.+
T Consensus 87 ~~~i~~v~q~~~l~~-~tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~l~~~~~~~~~~LS~G~~qrv~laral 165 (259)
T PRK14260 87 RRQIGMVFQRPNPFP-MSIYENVAYGVRISAKLPQADLDEIVESALKGAALWQEVKDKLNKSALGLSGGQQQRLCIARAL 165 (259)
T ss_pred hhheEEEecccccCC-ccHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCcchhhhHhcCCcccCCHHHHHHHHHHHHH
Confidence 134789999998887 78888875321 00 00 0 00 012222334556677788888899
Q ss_pred EEecceeecccccCCCCE
Q 006117 163 IIEGIYALSEKLRPLIDL 180 (660)
Q Consensus 163 IVEGilaL~deLr~llDl 180 (660)
+.++.+++.||+...+|.
T Consensus 166 ~~~p~lllLDEPt~~LD~ 183 (259)
T PRK14260 166 AIKPKVLLMDEPCSALDP 183 (259)
T ss_pred hcCCCEEEEcCCCccCCH
Confidence 999999999999999997
No 299
>PF01121 CoaE: Dephospho-CoA kinase; InterPro: IPR001977 This family contains dephospho-CoA kinases (2.7.1.24 from EC), which catalyzes the final step in CoA biosynthesis, the phosphorylation of the 3'-hydroxyl group of ribose using ATP as a phosphate donor. The crystal structures of a number of the proteins in this entry have been determined, including the structure of the protein from Haemophilus influenzae to 2.0-A resolution in a comlex with ATP. The protein consists of three domains: the nucleotide-binding domain with a five-stranded parallel beta-sheet, the substrate-binding alpha-helical domain, and the lid domain formed by a pair of alpha-helices; the overall topology of the protein resembles the structures of other nucleotide kinases [].; GO: 0004140 dephospho-CoA kinase activity, 0005524 ATP binding, 0015937 coenzyme A biosynthetic process; PDB: 1VHL_A 1N3B_A 1VIY_A 1VHT_B 1T3H_B 1UF9_C 2F6R_A 2GRJ_D 2IF2_C 1JJV_A.
Probab=99.20 E-value=1.3e-11 Score=122.01 Aligned_cols=160 Identities=21% Similarity=0.259 Sum_probs=100.2
Q ss_pred eEEEEECCCCCcHHHHHHHHHHhCCCceEEEecCcc----ccc--------cccc-ccCCCCCCCchhhHHHHHHh----
Q 006117 67 ILVGVAGPSGAGKTVFTEKVLNFMPSIAVITMDNYN----DSS--------RIID-GNFDDPRLTDYDTLLENIRG---- 129 (660)
Q Consensus 67 ~IIGI~GpSGSGKSTLak~L~~lLp~~g~I~lDg~~----~~~--------~~i~-~vfq~p~l~d~~tl~e~L~~---- 129 (660)
.+|||+|+.||||||+++.|... +..+++.|... ... ...+ -+++..+..|...+.+.+..
T Consensus 1 ~iIglTG~igsGKStv~~~l~~~--G~~vidaD~i~~~l~~~~~~~~~~l~~~FG~~il~~~g~idR~~L~~~vF~d~~~ 78 (180)
T PF01121_consen 1 MIIGLTGGIGSGKSTVSKILAEL--GFPVIDADEIAHELYEPGSEGYKALKERFGEEILDEDGEIDRKKLAEIVFSDPEK 78 (180)
T ss_dssp EEEEEEESTTSSHHHHHHHHHHT--T-EEEEHHHHHHHCTSCTCHHHHHHHHHHGGGGBETTSSB-HHHHHHHHTTSHHH
T ss_pred CEEEEECCCcCCHHHHHHHHHHC--CCCEECccHHHHHHhhcCHHHHHHHHHHcCccccCCCCCChHHHHHHHHhcCHHH
Confidence 48999999999999999999993 67788888641 111 0111 12333344565555555422
Q ss_pred hhcCcccccccccccccccccceeeecCCccEEEEecceeecccccCCCCEEEEEEcChhHHHHHHHHHHHHHhCCCHHH
Q 006117 130 LKEGKAVQVPIYDFKSSSRIGYRTLEVPSSRIVIIEGIYALSEKLRPLIDLRVSVTGGVHFDLVKRVFRDIQRVGQEPEE 209 (660)
Q Consensus 130 L~~Gk~I~~PiyD~s~~~rs~~~~~~v~~a~VVIVEGilaL~deLr~llDlkIfVdad~dirLiRRI~RDv~eRGrs~E~ 209 (660)
++.-+.+.+|........+.. ......++++|.++++...+...||..|+|++|.++++.|-+.|+ |.+.++
T Consensus 79 ~~~L~~iihP~I~~~~~~~~~----~~~~~~~~v~e~pLL~E~~~~~~~D~vi~V~a~~e~ri~Rl~~R~----~~~~~~ 150 (180)
T PF01121_consen 79 LKKLENIIHPLIREEIEKFIK----RNKSEKVVVVEIPLLFESGLEKLCDEVIVVYAPEEIRIKRLMERD----GLSEEE 150 (180)
T ss_dssp HHHHHHHHHHHHHHHHHHHHH----HCHSTSEEEEE-TTTTTTTGGGGSSEEEEEE--HHHHHHHHHHHH----TSTHHH
T ss_pred HHHHHHHHhHHHHHHHHHHHH----hccCCCEEEEEcchhhhhhHhhhhceEEEEECCHHHHHHHHHhhC----CCcHHH
Confidence 222344566654433332221 112227899999999988899999999999999888766655554 999999
Q ss_pred HHHHHHhccccchhhcccCCcCcCcEEEeCCCC
Q 006117 210 IIHQISETVYPMYKAFIEPDLQTAHIKIINKFN 242 (660)
Q Consensus 210 Vl~qy~~~v~P~~~~fIeP~k~~ADiII~N~~~ 242 (660)
+..++ ...+|..+ .++.||+||.|+++
T Consensus 151 ~~~ri-~~Q~~~~~-----k~~~ad~vI~N~g~ 177 (180)
T PF01121_consen 151 AEARI-ASQMPDEE-----KRKRADFVIDNNGS 177 (180)
T ss_dssp HHHHH-HTS--HHH-----HHHH-SEEEE-SSH
T ss_pred HHHHH-HhCCCHHH-----HHHhCCEEEECCCC
Confidence 88777 44445433 35789999999875
No 300
>PRK14263 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.19 E-value=3.2e-11 Score=124.97 Aligned_cols=139 Identities=17% Similarity=0.144 Sum_probs=102.4
Q ss_pred eccceeeeecCceEEEEecceeeccCCcceEEEEECCCCCcHHHHHHHHHHhC-C-----CceEEEecCcccc-------
Q 006117 38 PIEDTLSFEKGFFIVIRACQLLAQKNHGIILVGVAGPSGAGKTVFTEKVLNFM-P-----SIAVITMDNYNDS------- 104 (660)
Q Consensus 38 ~~~~~ls~~~g~~~vL~~Isl~i~~ge~~~IIGI~GpSGSGKSTLak~L~~lL-p-----~~g~I~lDg~~~~------- 104 (660)
...+..++.++...++++++|.+++|+ ++||+|+||||||||+++|++++ | ..|.|.++|.+..
T Consensus 9 ~~~~~~~~~~~~~~~l~~vs~~i~~Ge---~~~i~G~nGsGKSTLl~~l~Gl~~p~~~~~~~G~i~~~g~~i~~~~~~~~ 85 (261)
T PRK14263 9 MDCKLDKIFYGNFMAVRDSHVPIRKNE---ITGFIGPSGCGKSTVLRSLNRMNDLVKGFRFEGHVHFLGQDVYGKGVDPV 85 (261)
T ss_pred EEEEeEEEEeCCEEEEeeeEEEEcCCC---EEEEECCCCCCHHHHHHHHHcccccccCCCCceEEEECCEeccccccchH
Confidence 344555566677889999999999999 99999999999999999999998 4 5899999997532
Q ss_pred --cccccccCCCCCCCchhhHHHHHHhhhc--C---c---c-------ccc-c----cccccccccccceeeecCCccEE
Q 006117 105 --SRIIDGNFDDPRLTDYDTLLENIRGLKE--G---K---A-------VQV-P----IYDFKSSSRIGYRTLEVPSSRIV 162 (660)
Q Consensus 105 --~~~i~~vfq~p~l~d~~tl~e~L~~L~~--G---k---~-------I~~-P----iyD~s~~~rs~~~~~~v~~a~VV 162 (660)
.+.++++||++.+++ .++.+++..... + . . ... + ..+...+..++++.+++..++.+
T Consensus 86 ~~~~~i~~v~q~~~~~~-~tv~enl~~~~~~~~~~~~~~~~~~~~l~~~~l~~~i~~~~~~~~~~LS~G~~qrv~laral 164 (261)
T PRK14263 86 VVRRYIGMVFQQPNPFS-MSIFDNVAFGLRLNRYKGDLGDRVKHALQGAALWDEVKDKLKVSGLSLSGGQQQRLCIARAI 164 (261)
T ss_pred hhhhceEEEecCCcccc-ccHHHHHHHHHhhcCchHHHHHHHHHHHHHcCCchhhhhhhhCCcccCCHHHHHHHHHHHHH
Confidence 134788999998874 788888753211 0 0 0 000 0 01112233455677777778888
Q ss_pred EEecceeecccccCCCCE
Q 006117 163 IIEGIYALSEKLRPLIDL 180 (660)
Q Consensus 163 IVEGilaL~deLr~llDl 180 (660)
+-++.+++.||+...+|.
T Consensus 165 ~~~p~llllDEPtsgLD~ 182 (261)
T PRK14263 165 ATEPEVLLLDEPCSALDP 182 (261)
T ss_pred HcCCCEEEEeCCCccCCH
Confidence 889999999999999997
No 301
>cd03244 ABCC_MRP_domain2 Domain 2 of the ABC subfamily C. This family is also known as MRP (mulrtidrug resisitance-associated protein). Some of the MRP members have five additional transmembrane segments in their N-terminus, but the function of these additional membrane-spanning domains is not clear. The MRP was found in the multidrug-resistance lung cancer cell in which p-glycoprotein was not overexpressed. MRP exports glutathione by drug stimulation, as well as, certain substrates in conjugated forms with anions, such as glutathione, glucuronate, and sulfate.
Probab=99.19 E-value=1.6e-11 Score=123.11 Aligned_cols=127 Identities=17% Similarity=0.158 Sum_probs=95.5
Q ss_pred eEEEEecceeeccCCcceEEEEECCCCCcHHHHHHHHHHhC-CCceEEEecCcccc-------cccccccCCCCCCCchh
Q 006117 50 FIVIRACQLLAQKNHGIILVGVAGPSGAGKTVFTEKVLNFM-PSIAVITMDNYNDS-------SRIIDGNFDDPRLTDYD 121 (660)
Q Consensus 50 ~~vL~~Isl~i~~ge~~~IIGI~GpSGSGKSTLak~L~~lL-p~~g~I~lDg~~~~-------~~~i~~vfq~p~l~d~~ 121 (660)
..++++++|.+++|+ +++|+|+||||||||+++|++.. |..|.|.++|.... .+.+++++|++.+++ .
T Consensus 17 ~~~l~~i~~~i~~Ge---~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~i~~~~q~~~l~~-~ 92 (221)
T cd03244 17 PPVLKNISFSIKPGE---KVGIVGRTGSGKSSLLLALFRLVELSSGSILIDGVDISKIGLHDLRSRISIIPQDPVLFS-G 92 (221)
T ss_pred cccccceEEEECCCC---EEEEECCCCCCHHHHHHHHHcCCCCCCCEEEECCEEhHhCCHHHHhhhEEEECCCCcccc-c
Confidence 469999999999999 99999999999999999999998 78999999986432 245789999998776 4
Q ss_pred hHHHHHHhhhcCc--c-------ccc-cc-----------ccccccccccceeeecCCccEEEEecceeecccccCCCCE
Q 006117 122 TLLENIRGLKEGK--A-------VQV-PI-----------YDFKSSSRIGYRTLEVPSSRIVIIEGIYALSEKLRPLIDL 180 (660)
Q Consensus 122 tl~e~L~~L~~Gk--~-------I~~-Pi-----------yD~s~~~rs~~~~~~v~~a~VVIVEGilaL~deLr~llDl 180 (660)
++.+++....... . ... .. .+......++++.+++..++.++.++.+++.||+...+|.
T Consensus 93 tv~enl~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~l~~~~~~~~~~LS~G~~qr~~laral~~~p~llllDEP~~~LD~ 172 (221)
T cd03244 93 TIRSNLDPFGEYSDEELWQALERVGLKEFVESLPGGLDTVVEEGGENLSVGQRQLLCLARALLRKSKILVLDEATASVDP 172 (221)
T ss_pred hHHHHhCcCCCCCHHHHHHHHHHhCcHHHHHhcccccccccccCCCcCCHHHHHHHHHHHHHhcCCCEEEEeCccccCCH
Confidence 8888875321100 0 000 00 0112233455667778888889999999999999999987
No 302
>TIGR03269 met_CoM_red_A2 methyl coenzyme M reductase system, component A2. The enzyme that catalyzes the final step in methanogenesis, methyl coenzyme M reductase, contains alpha, beta, and gamma chains. In older literature, the complex of alpha, beta, and gamma chains was termed component C, while this single chain protein was termed methyl coenzyme M reductase system component A2.
Probab=99.19 E-value=2.3e-11 Score=137.29 Aligned_cols=137 Identities=20% Similarity=0.182 Sum_probs=102.7
Q ss_pred ceeeeecCceEEEEecceeeccCCcceEEEEECCCCCcHHHHHHHHHHhC---CCceEEEecC-----------------
Q 006117 41 DTLSFEKGFFIVIRACQLLAQKNHGIILVGVAGPSGAGKTVFTEKVLNFM---PSIAVITMDN----------------- 100 (660)
Q Consensus 41 ~~ls~~~g~~~vL~~Isl~i~~ge~~~IIGI~GpSGSGKSTLak~L~~lL---p~~g~I~lDg----------------- 100 (660)
+++++.++...++++++|.+.+|+ ++||+|+||||||||+++|++++ |+.|.|.+++
T Consensus 4 ~~l~~~~~~~~~l~~is~~i~~Ge---~~~iiG~nGsGKSTLl~~l~Gl~~~~p~~G~i~~~~~~~~~~~~~~~~~~~g~ 80 (520)
T TIGR03269 4 KNLTKKFDGKEVLKNISFTIEEGE---VLGILGRSGAGKSVLMHVLRGMDQYEPTSGRIIYHVALCEKCGYVERPSKVGE 80 (520)
T ss_pred EEEEEEECCeEeeeceeEEEcCCC---EEEEECCCCCCHHHHHHHHhhcccCCCCceEEEEecccccccccccccccccc
Confidence 445555666789999999999999 99999999999999999999995 7889998862
Q ss_pred ------ccc-----------------ccccccccCCC-CCCCchhhHHHHHHhhhc--Cc-------c-------cccc-
Q 006117 101 ------YND-----------------SSRIIDGNFDD-PRLTDYDTLLENIRGLKE--GK-------A-------VQVP- 139 (660)
Q Consensus 101 ------~~~-----------------~~~~i~~vfq~-p~l~d~~tl~e~L~~L~~--Gk-------~-------I~~P- 139 (660)
... ..+.++++||+ +.+++..++.+++..... +. . +...
T Consensus 81 ~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~i~~v~q~~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~l~~~gl~~ 160 (520)
T TIGR03269 81 PCPVCGGTLEPEEVDFWNLSDKLRRRIRKRIAIMLQRTFALYGDDTVLDNVLEALEEIGYEGKEAVGRAVDLIEMVQLSH 160 (520)
T ss_pred ccccccccccccchhhhccCHHHHHHhhhcEEEEeccccccCCCCCHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCChh
Confidence 100 01246889997 577777788888753111 10 0 1111
Q ss_pred cccccccccccceeeecCCccEEEEecceeecccccCCCCE
Q 006117 140 IYDFKSSSRIGYRTLEVPSSRIVIIEGIYALSEKLRPLIDL 180 (660)
Q Consensus 140 iyD~s~~~rs~~~~~~v~~a~VVIVEGilaL~deLr~llDl 180 (660)
..+...+..++++.+++..+..++.++.+++.||+...+|.
T Consensus 161 ~~~~~~~~LSgGq~qrv~iA~al~~~p~lllLDEPt~~LD~ 201 (520)
T TIGR03269 161 RITHIARDLSGGEKQRVVLARQLAKEPFLFLADEPTGTLDP 201 (520)
T ss_pred hhhcCcccCCHHHHHHHHHHHHHhcCCCEEEeeCCcccCCH
Confidence 12334456677888889999999999999999999999997
No 303
>PRK14258 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.19 E-value=2.9e-11 Score=124.98 Aligned_cols=137 Identities=15% Similarity=0.135 Sum_probs=101.7
Q ss_pred cceeeeecCceEEEEecceeeccCCcceEEEEECCCCCcHHHHHHHHHHhC-CC-----ceEEEecCcccc---------
Q 006117 40 EDTLSFEKGFFIVIRACQLLAQKNHGIILVGVAGPSGAGKTVFTEKVLNFM-PS-----IAVITMDNYNDS--------- 104 (660)
Q Consensus 40 ~~~ls~~~g~~~vL~~Isl~i~~ge~~~IIGI~GpSGSGKSTLak~L~~lL-p~-----~g~I~lDg~~~~--------- 104 (660)
.+++++.++...++++++|.+++|+ ++||+|+||||||||+++|++++ |+ .|.|.++|.+..
T Consensus 10 ~~nl~~~~~~~~il~~is~~i~~Ge---~~~I~G~nGsGKSTLl~~l~Gl~~~~g~i~~~G~i~~~g~~i~~~~~~~~~~ 86 (261)
T PRK14258 10 VNNLSFYYDTQKILEGVSMEIYQSK---VTAIIGPSGCGKSTFLKCLNRMNELESEVRVEGRVEFFNQNIYERRVNLNRL 86 (261)
T ss_pred EeeEEEEeCCeeEeeceEEEEcCCc---EEEEECCCCCCHHHHHHHHhcccCCCCCccccceEEECCEEhhccccchHHh
Confidence 4555566666679999999999999 99999999999999999999998 43 689999886431
Q ss_pred cccccccCCCCCCCchhhHHHHHHhhhc--C----cc-----------ccc-----ccccccccccccceeeecCCccEE
Q 006117 105 SRIIDGNFDDPRLTDYDTLLENIRGLKE--G----KA-----------VQV-----PIYDFKSSSRIGYRTLEVPSSRIV 162 (660)
Q Consensus 105 ~~~i~~vfq~p~l~d~~tl~e~L~~L~~--G----k~-----------I~~-----PiyD~s~~~rs~~~~~~v~~a~VV 162 (660)
.+.++++||++.+++ .++.+++..... + .. +.. +..+......++++..++..++.+
T Consensus 87 ~~~i~~~~q~~~l~~-~tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~LSgGq~qrv~laral 165 (261)
T PRK14258 87 RRQVSMVHPKPNLFP-MSVYDNVAYGVKIVGWRPKLEIDDIVESALKDADLWDEIKHKIHKSALDLSGGQQQRLCIARAL 165 (261)
T ss_pred hccEEEEecCCccCc-ccHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHcCCcchhhhHhcCCcccCCHHHHHHHHHHHHH
Confidence 134778899988887 788888753210 0 00 000 011222344556677788888889
Q ss_pred EEecceeecccccCCCCE
Q 006117 163 IIEGIYALSEKLRPLIDL 180 (660)
Q Consensus 163 IVEGilaL~deLr~llDl 180 (660)
+..+.+++.||+...+|.
T Consensus 166 ~~~p~vllLDEP~~~LD~ 183 (261)
T PRK14258 166 AVKPKVLLMDEPCFGLDP 183 (261)
T ss_pred hcCCCEEEEeCCCccCCH
Confidence 999999999999999997
No 304
>PRK14264 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.19 E-value=3.7e-11 Score=127.31 Aligned_cols=137 Identities=15% Similarity=0.176 Sum_probs=103.4
Q ss_pred cceeeeecCceEEEEecceeeccCCcceEEEEECCCCCcHHHHHHHHHHhC------CCceEEEecCcccc---------
Q 006117 40 EDTLSFEKGFFIVIRACQLLAQKNHGIILVGVAGPSGAGKTVFTEKVLNFM------PSIAVITMDNYNDS--------- 104 (660)
Q Consensus 40 ~~~ls~~~g~~~vL~~Isl~i~~ge~~~IIGI~GpSGSGKSTLak~L~~lL------p~~g~I~lDg~~~~--------- 104 (660)
.+++++.++...+|++++|.+.+|+ ++||+|+||||||||+++|++++ |..|.|.++|....
T Consensus 48 i~nl~~~~~~~~iL~~is~~i~~Ge---~~~IvG~nGsGKSTLl~~L~Gl~~~~~~~p~~G~I~i~g~~i~~~~~~~~~~ 124 (305)
T PRK14264 48 VEDLDVYYGDDHALKGVSMDIPEKS---VTALIGPSGCGKSTFLRCLNRMNDRIKAARIDGSVELDGQDIYQDGVNLVEL 124 (305)
T ss_pred EEEEEEEeCCeeeeeeeEEEEcCCC---EEEEECCCCCCHHHHHHHHhccccccCCCCCceEEEECCEEcccccccHHHH
Confidence 4566666666789999999999999 99999999999999999999997 36899999986432
Q ss_pred cccccccCCCCCCCchhhHHHHHHhhhc--C------------c---c------------ccc-----cccccccccccc
Q 006117 105 SRIIDGNFDDPRLTDYDTLLENIRGLKE--G------------K---A------------VQV-----PIYDFKSSSRIG 150 (660)
Q Consensus 105 ~~~i~~vfq~p~l~d~~tl~e~L~~L~~--G------------k---~------------I~~-----PiyD~s~~~rs~ 150 (660)
.+.+++++|++.+++ .++.+++..... + . . +.. ...+......++
T Consensus 125 ~~~i~~v~q~~~l~~-~tv~enl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~LSg 203 (305)
T PRK14264 125 RKRVGMVFQSPNPFP-KSIRENISYGPRKHGDINTGLLARLLGRDDKDAEDELVERSLRQAALWDEVNDRLDDNALGLSG 203 (305)
T ss_pred hhceEEEccCCcccc-ccHHHHHHhHHhhcccccccccccccccCchHHHHHHHHHHHHHcCCchhhhHHhcCccccCCH
Confidence 134789999998887 488888763210 0 0 0 000 011223344566
Q ss_pred ceeeecCCccEEEEecceeecccccCCCCE
Q 006117 151 YRTLEVPSSRIVIIEGIYALSEKLRPLIDL 180 (660)
Q Consensus 151 ~~~~~v~~a~VVIVEGilaL~deLr~llDl 180 (660)
++.+++..++.++.++.+++.||+...+|.
T Consensus 204 Gq~qrv~LAraL~~~p~lLLLDEPtsgLD~ 233 (305)
T PRK14264 204 GQQQRLCIARCLAVDPEVILMDEPASALDP 233 (305)
T ss_pred HHHHHHHHHHHHhcCCCEEEEeCCcccCCH
Confidence 677788888899999999999999999997
No 305
>PRK03695 vitamin B12-transporter ATPase; Provisional
Probab=99.19 E-value=2.2e-11 Score=125.10 Aligned_cols=126 Identities=12% Similarity=0.116 Sum_probs=93.7
Q ss_pred EEEecceeeccCCcceEEEEECCCCCcHHHHHHHHHHhCCCceEEEecCccccc-------ccccccCCCCCCCchhhHH
Q 006117 52 VIRACQLLAQKNHGIILVGVAGPSGAGKTVFTEKVLNFMPSIAVITMDNYNDSS-------RIIDGNFDDPRLTDYDTLL 124 (660)
Q Consensus 52 vL~~Isl~i~~ge~~~IIGI~GpSGSGKSTLak~L~~lLp~~g~I~lDg~~~~~-------~~i~~vfq~p~l~d~~tl~ 124 (660)
+|++++|.+++|+ ++||+|+||||||||+++|++++|..|.|.++|..... +.++++||++.+++..++.
T Consensus 11 ~l~~vsl~i~~Ge---i~~l~G~nGsGKSTLl~~l~Gl~~~~G~i~~~g~~i~~~~~~~~~~~i~~v~q~~~~~~~~tv~ 87 (248)
T PRK03695 11 RLGPLSAEVRAGE---ILHLVGPNGAGKSTLLARMAGLLPGSGSIQFAGQPLEAWSAAELARHRAYLSQQQTPPFAMPVF 87 (248)
T ss_pred eecceEEEEcCCC---EEEEECCCCCCHHHHHHHHcCCCCCCeEEEECCEecCcCCHHHHhhheEEecccCccCCCccHH
Confidence 7899999999999 99999999999999999999998768999999975321 2468899998777778888
Q ss_pred HHHHhhhc-Ccc--------------ccc-ccccccccccccceeeecCCccEEEE-------ecceeecccccCCCCE
Q 006117 125 ENIRGLKE-GKA--------------VQV-PIYDFKSSSRIGYRTLEVPSSRIVII-------EGIYALSEKLRPLIDL 180 (660)
Q Consensus 125 e~L~~L~~-Gk~--------------I~~-PiyD~s~~~rs~~~~~~v~~a~VVIV-------EGilaL~deLr~llDl 180 (660)
+++..... +.. ... +..+...+..++++.+++..+..++. ++.+++.||+...+|.
T Consensus 88 ~nl~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~la~al~~~~~~~~p~p~llllDEPt~~LD~ 166 (248)
T PRK03695 88 QYLTLHQPDKTRTEAVASALNEVAEALGLDDKLGRSVNQLSGGEWQRVRLAAVVLQVWPDINPAGQLLLLDEPMNSLDV 166 (248)
T ss_pred HHHHhcCccCCCcHHHHHHHHHHHHHcCCHhHhcCCcccCCHHHHHHHHHHHHHhccccccCCCCCEEEEcCCcccCCH
Confidence 88764321 100 001 11122334445567777777777776 5578888999999997
No 306
>cd03220 ABC_KpsT_Wzt ABC_KpsT_Wzt The KpsT/Wzt ABC transporter subfamily is involved in extracellular polysaccharide export. Among the variety of membrane-linked or extracellular polysaccharides excreted by bacteria, only capsular polysaccharides, lipopolysaccharides, and teichoic acids have been shown to be exported by ABC transporters. A typical system is made of a conserved integral membrane and an ABC. In addition to these proteins, capsular polysaccharide exporter systems require two 'accessory' proteins to perform their function: a periplasmic (E.coli) or a lipid-anchored outer membrane protein called OMA (Neisseria meningitidis and Haemophilus influenzae) and a cytoplasmic membrane protein MPA2.
Probab=99.18 E-value=2.4e-11 Score=122.88 Aligned_cols=134 Identities=16% Similarity=0.102 Sum_probs=94.9
Q ss_pred ccceeeeecCceEEEEecceeeccCCcceEEEEECCCCCcHHHHHHHHHHhC-CCceEEEecCcccccccccccCCCCCC
Q 006117 39 IEDTLSFEKGFFIVIRACQLLAQKNHGIILVGVAGPSGAGKTVFTEKVLNFM-PSIAVITMDNYNDSSRIIDGNFDDPRL 117 (660)
Q Consensus 39 ~~~~ls~~~g~~~vL~~Isl~i~~ge~~~IIGI~GpSGSGKSTLak~L~~lL-p~~g~I~lDg~~~~~~~i~~vfq~p~l 117 (660)
....++..++...++++++|.+++|+ +++|+|+||||||||+++|++.+ |..|.|.++|........ ...+
T Consensus 24 ~~~~~~~~~~~~~il~~vs~~i~~Ge---~~~i~G~nGsGKSTLl~~l~G~~~p~~G~i~~~g~~~~~~~~-----~~~~ 95 (224)
T cd03220 24 GILGRKGEVGEFWALKDVSFEVPRGE---RIGLIGRNGAGKSTLLRLLAGIYPPDSGTVTVRGRVSSLLGL-----GGGF 95 (224)
T ss_pred hhhhhhhhcCCeEEEeeeEEEEcCCC---EEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEEchhhcc-----cccC
Confidence 34556667788899999999999999 99999999999999999999998 789999999864321111 1122
Q ss_pred CchhhHHHHHHhhhc--C---c-----------cccc-ccccccccccccceeeecCCccEEEEecceeecccccCCCCE
Q 006117 118 TDYDTLLENIRGLKE--G---K-----------AVQV-PIYDFKSSSRIGYRTLEVPSSRIVIIEGIYALSEKLRPLIDL 180 (660)
Q Consensus 118 ~d~~tl~e~L~~L~~--G---k-----------~I~~-PiyD~s~~~rs~~~~~~v~~a~VVIVEGilaL~deLr~llDl 180 (660)
++..++.+++..... + . .... +..+......++++.+++..++.++-++.+++.||+...+|.
T Consensus 96 ~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgG~~qrv~laral~~~p~llllDEP~~gLD~ 175 (224)
T cd03220 96 NPELTGRENIYLNGRLLGLSRKEIDEKIDEIIEFSELGDFIDLPVKTYSSGMKARLAFAIATALEPDILLIDEVLAVGDA 175 (224)
T ss_pred CCCCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCChhhhhCChhhCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCH
Confidence 233456665532110 0 0 0001 112333345566777788888889999999999999999997
No 307
>TIGR02770 nickel_nikD nickel import ATP-binding protein NikD. This family represents the NikD subunit of a multisubunit nickel import ABC transporter complex. Nickel, once imported, may be used in urease and in certain classes of hydrogenase and superoxide dismutase. NikD and NikE are homologous.
Probab=99.18 E-value=1.4e-11 Score=124.84 Aligned_cols=126 Identities=18% Similarity=0.271 Sum_probs=93.0
Q ss_pred EEEecceeeccCCcceEEEEECCCCCcHHHHHHHHHHhC-C----CceEEEecCcccc-----cccccccCCCCC--CCc
Q 006117 52 VIRACQLLAQKNHGIILVGVAGPSGAGKTVFTEKVLNFM-P----SIAVITMDNYNDS-----SRIIDGNFDDPR--LTD 119 (660)
Q Consensus 52 vL~~Isl~i~~ge~~~IIGI~GpSGSGKSTLak~L~~lL-p----~~g~I~lDg~~~~-----~~~i~~vfq~p~--l~d 119 (660)
++++++|.+++|+ +++|+|+||||||||+++|++++ | ..|.|.++|.... .+.+++++|++. +++
T Consensus 1 ~l~~vs~~i~~Ge---~~~i~G~nGsGKSTLl~~l~Gl~~p~~~~~~G~i~~~g~~~~~~~~~~~~i~~~~q~~~~~~~~ 77 (230)
T TIGR02770 1 LVQDLNLSLKRGE---VLALVGESGSGKSLTCLAILGLLPPGLTQTSGEILLDGRPLLPLSIRGRHIATIMQNPRTAFNP 77 (230)
T ss_pred CccceeEEEcCCC---EEEEECCCCCCHHHHHHHHhcCCCCccCccccEEEECCEechhhhhhhheeEEEecCchhhcCc
Confidence 4789999999999 99999999999999999999998 6 7999999996432 235789999985 334
Q ss_pred hhhHHHHHHhhh--cCc-c-------------cccc----cccccccccccceeeecCCccEEEEecceeecccccCCCC
Q 006117 120 YDTLLENIRGLK--EGK-A-------------VQVP----IYDFKSSSRIGYRTLEVPSSRIVIIEGIYALSEKLRPLID 179 (660)
Q Consensus 120 ~~tl~e~L~~L~--~Gk-~-------------I~~P----iyD~s~~~rs~~~~~~v~~a~VVIVEGilaL~deLr~llD 179 (660)
..++.+++.... .+. . ...+ ..+......++++.+++..++.++.++.+++.||+...+|
T Consensus 78 ~~t~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~LS~G~~qrv~laral~~~p~vllLDEPt~~LD 157 (230)
T TIGR02770 78 LFTMGNHAIETLRSLGKLSKQARALILEALEAVGLPDPEEVLKKYPFQLSGGMLQRVMIALALLLEPPFLIADEPTTDLD 157 (230)
T ss_pred ccCHHHHHHHHHHHcCccHHHHHHHHHHHHHHcCCCchHHHHhCChhhcCHHHHHHHHHHHHHhcCCCEEEEcCCccccC
Confidence 456666653211 110 0 0011 1233334456677778888888999999999999999999
Q ss_pred E
Q 006117 180 L 180 (660)
Q Consensus 180 l 180 (660)
.
T Consensus 158 ~ 158 (230)
T TIGR02770 158 V 158 (230)
T ss_pred H
Confidence 6
No 308
>PRK13477 bifunctional pantoate ligase/cytidylate kinase; Provisional
Probab=99.18 E-value=8.6e-11 Score=132.46 Aligned_cols=185 Identities=18% Similarity=0.175 Sum_probs=120.9
Q ss_pred ecCceEEEEecceeeccCCcceEEEEECCCCCcHHHHHHHHHHhCCCceEEEecCccccc----ccccccCCCCCCCchh
Q 006117 46 EKGFFIVIRACQLLAQKNHGIILVGVAGPSGAGKTVFTEKVLNFMPSIAVITMDNYNDSS----RIIDGNFDDPRLTDYD 121 (660)
Q Consensus 46 ~~g~~~vL~~Isl~i~~ge~~~IIGI~GpSGSGKSTLak~L~~lLp~~g~I~lDg~~~~~----~~i~~vfq~p~l~d~~ 121 (660)
..|....++|+.+.. ++. +|+|.||+||||||+++.|+..+ +...++.|.++..- ...++.++++..+ .
T Consensus 268 ~~g~~RLIDN~~~~~-~~~---ii~i~G~sgsGKst~a~~la~~l-~~~~~d~g~~YR~~a~~~l~~~~~~~~~~~l--~ 340 (512)
T PRK13477 268 RCGSTRLIDNVFLMK-RQP---IIAIDGPAGAGKSTVTRAVAKKL-GLLYLDTGAMYRAVTWLVLQEGIDPQDEEAL--A 340 (512)
T ss_pred EeCCeEEEeeeEecc-CCc---EEEEECCCCCCHHHHHHHHHHHc-CCeEecCCceehHHHHHHHHcCcCCcCHHHH--H
Confidence 447778999998865 444 99999999999999999999998 34455556554431 1122333332211 1
Q ss_pred hHHHHHHhhh-----cCcccccccccccccccccc--------------------eeeecCCccEEEEecceeecccccC
Q 006117 122 TLLENIRGLK-----EGKAVQVPIYDFKSSSRIGY--------------------RTLEVPSSRIVIIEGIYALSEKLRP 176 (660)
Q Consensus 122 tl~e~L~~L~-----~Gk~I~~PiyD~s~~~rs~~--------------------~~~~v~~a~VVIVEGilaL~deLr~ 176 (660)
.+.+++.... .+..+..|.+|...+-|... .........-+|+||-.+. ..+.+
T Consensus 341 ~l~~~l~~~~~~~~~~~~~i~~~~~dv~~~iRs~eV~~~vS~ia~~p~VR~~l~~~qr~~~~~~~iV~eGRDig-tvV~P 419 (512)
T PRK13477 341 ELLSDLKIELKPSSGSPQRVWINGEDVTEAIRSPEVTSSVSAIAAQPAVRQALVKQQQRIGEKGGLVAEGRDIG-THVFP 419 (512)
T ss_pred HHHhcCCeeeccCCCCCceEEeCCcchHhhhcchhHHHHHHHHhCCHHHHHHHHHHHHHHhhcCCEEEEcccce-eEEcC
Confidence 2222222221 22357777777776544321 0111222234889997765 34556
Q ss_pred CCCEEEEEEcChhHHHHHHHHHHHHHhCC---CHHHHHHHHHhccccchhhcccCCcCc-CcEEEeC
Q 006117 177 LIDLRVSVTGGVHFDLVKRVFRDIQRVGQ---EPEEIIHQISETVYPMYKAFIEPDLQT-AHIKIIN 239 (660)
Q Consensus 177 llDlkIfVdad~dirLiRRI~RDv~eRGr---s~E~Vl~qy~~~v~P~~~~fIeP~k~~-ADiII~N 239 (660)
..|+|||++++.+++..||..+. ..||. +.+.+.+.+.++..-+..+.+.|.... ++++|+.
T Consensus 420 ~AdlKIfL~As~evRa~RR~~~l-~~Rpll~~~~e~i~~~i~eRd~~D~~R~i~PLy~a~dai~IDT 485 (512)
T PRK13477 420 DAELKIFLTASVEERARRRALDL-QAQGFPVIDLEQLEAQIAERDRLDSTREIAPLRKADDAIELIT 485 (512)
T ss_pred CCCEEEEEECCHHHHHHHHHhhh-hhCCCccCCHHHHHHHHHHHHhhhcccccccccccCCeEEEEC
Confidence 78999999999999888877654 35564 478899999888888888999998877 4566653
No 309
>COG3840 ThiQ ABC-type thiamine transport system, ATPase component [Coenzyme metabolism]
Probab=99.18 E-value=1.4e-11 Score=121.18 Aligned_cols=133 Identities=21% Similarity=0.268 Sum_probs=102.3
Q ss_pred eeeecCceEEEEecceeeccCCcceEEEEECCCCCcHHHHHHHHHHhC-CCceEEEecCcccc-----cccccccCCCCC
Q 006117 43 LSFEKGFFIVIRACQLLAQKNHGIILVGVAGPSGAGKTVFTEKVLNFM-PSIAVITMDNYNDS-----SRIIDGNFDDPR 116 (660)
Q Consensus 43 ls~~~g~~~vL~~Isl~i~~ge~~~IIGI~GpSGSGKSTLak~L~~lL-p~~g~I~lDg~~~~-----~~~i~~vfq~p~ 116 (660)
+.+.|+..+ =..++.++.|+ +++|+||||||||||++.|+++. |..|.|.++|.+.. .+.+.+.||+.+
T Consensus 7 V~~~y~~~~--~~fdl~v~~ge---~vAi~GpSGaGKSTLLnLIAGF~~P~~G~i~i~g~d~t~~~P~~RPVSmlFQEnN 81 (231)
T COG3840 7 VRFSYGHLP--MRFDLTVPAGE---IVAILGPSGAGKSTLLNLIAGFETPASGEILINGVDHTASPPAERPVSMLFQENN 81 (231)
T ss_pred eEEeeCcce--EEEEEeecCCc---EEEEECCCCccHHHHHHHHHhccCCCCceEEEcCeecCcCCcccCChhhhhhccc
Confidence 334444422 24566889999 99999999999999999999998 99999999997532 366889999999
Q ss_pred CCchhhHHHHHHhhh-cC--------cc-------cccc-cccccccccccceeeecCCccEEEEecceeecccccCCCC
Q 006117 117 LTDYDTLLENIRGLK-EG--------KA-------VQVP-IYDFKSSSRIGYRTLEVPSSRIVIIEGIYALSEKLRPLID 179 (660)
Q Consensus 117 l~d~~tl~e~L~~L~-~G--------k~-------I~~P-iyD~s~~~rs~~~~~~v~~a~VVIVEGilaL~deLr~llD 179 (660)
+|..+++.+|+..-. .+ +. +-.. ..+.-..+.++++.++++.++.++=|-+.++.||++..+|
T Consensus 82 LFaHLtV~qNigLGl~P~LkL~a~~r~~v~~aa~~vGl~~~~~RLP~~LSGGqRQRvALARclvR~~PilLLDEPFsALd 161 (231)
T COG3840 82 LFAHLTVAQNIGLGLSPGLKLNAEQREKVEAAAAQVGLAGFLKRLPGELSGGQRQRVALARCLVREQPILLLDEPFSALD 161 (231)
T ss_pred cchhhhhhhhhcccCCcccccCHHHHHHHHHHHHHhChhhHhhhCccccCchHHHHHHHHHHHhccCCeEEecCchhhcC
Confidence 999999999986321 11 01 1111 1233455677888899999999999999999999999888
Q ss_pred E
Q 006117 180 L 180 (660)
Q Consensus 180 l 180 (660)
.
T Consensus 162 P 162 (231)
T COG3840 162 P 162 (231)
T ss_pred H
Confidence 5
No 310
>TIGR00958 3a01208 Conjugate Transporter-2 (CT2) Family protein.
Probab=99.18 E-value=1e-11 Score=145.40 Aligned_cols=137 Identities=18% Similarity=0.236 Sum_probs=106.1
Q ss_pred cceeeeecC---ceEEEEecceeeccCCcceEEEEECCCCCcHHHHHHHHHHhC-CCceEEEecCcccc-------cccc
Q 006117 40 EDTLSFEKG---FFIVIRACQLLAQKNHGIILVGVAGPSGAGKTVFTEKVLNFM-PSIAVITMDNYNDS-------SRII 108 (660)
Q Consensus 40 ~~~ls~~~g---~~~vL~~Isl~i~~ge~~~IIGI~GpSGSGKSTLak~L~~lL-p~~g~I~lDg~~~~-------~~~i 108 (660)
-++++|.++ ...+|+++||.+++|+ .++|+|+|||||||+++.|.+++ |..|.|.+||.+.. .+.+
T Consensus 481 ~~nVsf~Y~~~~~~~vL~~isl~i~~Ge---~vaIvG~SGsGKSTLl~lL~gl~~p~~G~I~idg~~i~~~~~~~lr~~i 557 (711)
T TIGR00958 481 FQDVSFSYPNRPDVPVLKGLTFTLHPGE---VVALVGPSGSGKSTVAALLQNLYQPTGGQVLLDGVPLVQYDHHYLHRQV 557 (711)
T ss_pred EEEEEEECCCCCCCccccCceEEEcCCC---EEEEECCCCCCHHHHHHHHHhccCCCCCEEEECCEEHHhcCHHHHHhhc
Confidence 345566653 2469999999999999 99999999999999999999999 89999999997532 2468
Q ss_pred cccCCCCCCCchhhHHHHHHhhhcC---c-------------cc-ccc-ccccccc----ccccceeeecCCccEEEEec
Q 006117 109 DGNFDDPRLTDYDTLLENIRGLKEG---K-------------AV-QVP-IYDFKSS----SRIGYRTLEVPSSRIVIIEG 166 (660)
Q Consensus 109 ~~vfq~p~l~d~~tl~e~L~~L~~G---k-------------~I-~~P-iyD~s~~----~rs~~~~~~v~~a~VVIVEG 166 (660)
++++|+|.+|+ .++++|+...... + .+ ..| -||-..+ ..++++++++..++.++-++
T Consensus 558 ~~v~Q~~~lF~-gTIreNI~~g~~~~~~e~i~~al~~a~l~~~i~~lp~GldT~ige~G~~LSGGQkQRlalARALl~~p 636 (711)
T TIGR00958 558 ALVGQEPVLFS-GSVRENIAYGLTDTPDEEIMAAAKAANAHDFIMEFPNGYDTEVGEKGSQLSGGQKQRIAIARALVRKP 636 (711)
T ss_pred eEEecCccccc-cCHHHHHhcCCCCCCHHHHHHHHHHcCCHHHHHhCCCccCCcccCCCCcCCHHHHHHHHHHHHHhcCC
Confidence 89999999987 6899988643211 0 01 112 1333222 35667888899999999999
Q ss_pred ceeecccccCCCCE
Q 006117 167 IYALSEKLRPLIDL 180 (660)
Q Consensus 167 ilaL~deLr~llDl 180 (660)
..++.||+...+|.
T Consensus 637 ~ILILDEpTSaLD~ 650 (711)
T TIGR00958 637 RVLILDEATSALDA 650 (711)
T ss_pred CEEEEEccccccCH
Confidence 99999999999997
No 311
>TIGR01257 rim_protein retinal-specific rim ABC transporter. This model describes the photoreceptor protein (rim protein) in eukaryotes. It is the member of ABC transporter superfamily. Rim protein is a membrane glycoprotein which is localized in the photoreceptor outer segment discs. Mutation/s in its genetic loci is implicated in the recessive Stargardt's disease.
Probab=99.18 E-value=2.6e-11 Score=153.69 Aligned_cols=156 Identities=13% Similarity=0.009 Sum_probs=117.3
Q ss_pred ceeeeecCc--eEEEEecceeeccCCcceEEEEECCCCCcHHHHHHHHHHhC-CCceEEEecCcccc------ccccccc
Q 006117 41 DTLSFEKGF--FIVIRACQLLAQKNHGIILVGVAGPSGAGKTVFTEKVLNFM-PSIAVITMDNYNDS------SRIIDGN 111 (660)
Q Consensus 41 ~~ls~~~g~--~~vL~~Isl~i~~ge~~~IIGI~GpSGSGKSTLak~L~~lL-p~~g~I~lDg~~~~------~~~i~~v 111 (660)
+++++.++. ..++++++|.+++|+ ++||+|+|||||||++++|++.+ |+.|.|.++|+... .+.++++
T Consensus 1941 ~nLsK~Y~~~~~~aL~~ISf~I~~GE---i~gLLG~NGAGKTTLlkmL~Gll~ptsG~I~i~G~~i~~~~~~~r~~IGy~ 2017 (2272)
T TIGR01257 1941 NELTKVYSGTSSPAVDRLCVGVRPGE---CFGLLGVNGAGKTTTFKMLTGDTTVTSGDATVAGKSILTNISDVHQNMGYC 2017 (2272)
T ss_pred EEEEEEECCCCceEEEeeEEEEcCCc---EEEEECCCCCcHHHHHHHHhCCCCCCccEEEECCEECcchHHHHhhhEEEE
Confidence 444444443 679999999999999 99999999999999999999998 89999999997542 2458899
Q ss_pred CCCCCCCchhhHHHHHHhhhc--Cc---cc-----------cc-ccccccccccccceeeecCCccEEEEecceeecccc
Q 006117 112 FDDPRLTDYDTLLENIRGLKE--GK---AV-----------QV-PIYDFKSSSRIGYRTLEVPSSRIVIIEGIYALSEKL 174 (660)
Q Consensus 112 fq~p~l~d~~tl~e~L~~L~~--Gk---~I-----------~~-PiyD~s~~~rs~~~~~~v~~a~VVIVEGilaL~deL 174 (660)
+|++.+++..++.|++..... |. .+ .. ...+...+..++++++++..+..++-++.+++.||+
T Consensus 2018 pQ~~~L~~~LTv~E~L~l~a~l~g~~~~~~~~~v~~lLe~lgL~~~~dk~~~~LSGGqKqRLslA~ALi~~P~VLLLDEP 2097 (2272)
T TIGR01257 2018 PQFDAIDDLLTGREHLYLYARLRGVPAEEIEKVANWSIQSLGLSLYADRLAGTYSGGNKRKLSTAIALIGCPPLVLLDEP 2097 (2272)
T ss_pred eccccCCCCCCHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCHHHhcCChhhCCHHHHHHHHHHHHHhcCCCEEEEECC
Confidence 999999999999999864321 10 00 01 112334455677788888888899999999999999
Q ss_pred cCCCCEEEEEEcChhHHHHHHHHHHHHHhCCC
Q 006117 175 RPLIDLRVSVTGGVHFDLVKRVFRDIQRVGQE 206 (660)
Q Consensus 175 r~llDlkIfVdad~dirLiRRI~RDv~eRGrs 206 (660)
...+|. ...+.++++.+...+.|.+
T Consensus 2098 TsGLDp-------~sr~~l~~lL~~l~~~g~T 2122 (2272)
T TIGR01257 2098 TTGMDP-------QARRMLWNTIVSIIREGRA 2122 (2272)
T ss_pred CCCCCH-------HHHHHHHHHHHHHHhCCCE
Confidence 999997 4445555555554444443
No 312
>TIGR02633 xylG D-xylose ABC transporter, ATP-binding protein. Several bacterial species have enzymes xylose isomerase and xylulokinase enzymes for xylose utilization. Members of this protein family are the ATP-binding cassette (ABC) subunit of the known or predicted high-affinity xylose ABC transporter for xylose import. These genes, which closely resemble other sugar transport ABC transporter genes, typically are encoded near xylose utilization enzymes and regulatory proteins. Note that this form of the transporter contains two copies of the ABC transporter domain (pfam00005).
Probab=99.17 E-value=2.3e-11 Score=136.57 Aligned_cols=149 Identities=11% Similarity=0.055 Sum_probs=107.2
Q ss_pred ceEEEEecceeeccCCcceEEEEECCCCCcHHHHHHHHHHhC-C-CceEEEecCcccc--------cccccccCCCC---
Q 006117 49 FFIVIRACQLLAQKNHGIILVGVAGPSGAGKTVFTEKVLNFM-P-SIAVITMDNYNDS--------SRIIDGNFDDP--- 115 (660)
Q Consensus 49 ~~~vL~~Isl~i~~ge~~~IIGI~GpSGSGKSTLak~L~~lL-p-~~g~I~lDg~~~~--------~~~i~~vfq~p--- 115 (660)
...++++++|.+.+|+ ++||+|+||||||||+++|++.+ | ..|.|.++|.... .+.+++++|++
T Consensus 272 ~~~~l~~is~~i~~Ge---~~~l~G~NGsGKSTLl~~l~G~~~p~~~G~i~~~g~~~~~~~~~~~~~~~i~~v~q~~~~~ 348 (500)
T TIGR02633 272 HRKRVDDVSFSLRRGE---ILGVAGLVGAGRTELVQALFGAYPGKFEGNVFINGKPVDIRNPAQAIRAGIAMVPEDRKRH 348 (500)
T ss_pred cccccccceeEEeCCc---EEEEeCCCCCCHHHHHHHHhCCCCCCCCeEEEECCEECCCCCHHHHHhCCCEEcCcchhhC
Confidence 3568999999999999 99999999999999999999998 4 6999999986432 13478899986
Q ss_pred CCCchhhHHHHHHh-----hhc--C-c------c-------cccc--cccccccccccceeeecCCccEEEEecceeecc
Q 006117 116 RLTDYDTLLENIRG-----LKE--G-K------A-------VQVP--IYDFKSSSRIGYRTLEVPSSRIVIIEGIYALSE 172 (660)
Q Consensus 116 ~l~d~~tl~e~L~~-----L~~--G-k------~-------I~~P--iyD~s~~~rs~~~~~~v~~a~VVIVEGilaL~d 172 (660)
.+++..++.+++.. +.. . . . .... ..+......++++.+++..+..++.++.+++.|
T Consensus 349 ~l~~~~tv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgGqkqrv~la~al~~~p~lllLD 428 (500)
T TIGR02633 349 GIVPILGVGKNITLSVLKSFCFKMRIDAAAELQIIGSAIQRLKVKTASPFLPIGRLSGGNQQKAVLAKMLLTNPRVLILD 428 (500)
T ss_pred CcCCCCCHHHHhcchhhhhhccCCcCCHHHHHHHHHHHHHhcCccCCCccCccccCCHHHHHHHHHHHHHhhCCCEEEEc
Confidence 47777777777643 100 0 0 0 1111 112333456677888888889999999999999
Q ss_pred cccCCCCEEEEEEcChhHHHHHHHHHHHHHhCCCH
Q 006117 173 KLRPLIDLRVSVTGGVHFDLVKRVFRDIQRVGQEP 207 (660)
Q Consensus 173 eLr~llDlkIfVdad~dirLiRRI~RDv~eRGrs~ 207 (660)
|+...+|. ...+.+..+.+.+.+.|.+.
T Consensus 429 EPt~~LD~-------~~~~~l~~~l~~l~~~g~tv 456 (500)
T TIGR02633 429 EPTRGVDV-------GAKYEIYKLINQLAQEGVAI 456 (500)
T ss_pred CCCCCcCH-------hHHHHHHHHHHHHHhCCCEE
Confidence 99999998 33444444555554445443
No 313
>PLN03211 ABC transporter G-25; Provisional
Probab=99.17 E-value=3.3e-11 Score=140.15 Aligned_cols=155 Identities=13% Similarity=0.062 Sum_probs=113.9
Q ss_pred eecCceEEEEecceeeccCCcceEEEEECCCCCcHHHHHHHHHHhC-CC--ceEEEecCcccc---cccccccCCCCCCC
Q 006117 45 FEKGFFIVIRACQLLAQKNHGIILVGVAGPSGAGKTVFTEKVLNFM-PS--IAVITMDNYNDS---SRIIDGNFDDPRLT 118 (660)
Q Consensus 45 ~~~g~~~vL~~Isl~i~~ge~~~IIGI~GpSGSGKSTLak~L~~lL-p~--~g~I~lDg~~~~---~~~i~~vfq~p~l~ 118 (660)
..++...+|+++|+.+++|+ ++||+||||||||||+++|++.+ |+ .|.|.++|.... .+.+++++|++.++
T Consensus 76 ~~~~~~~iL~~vs~~i~~Ge---~~aI~GpnGaGKSTLL~iLaG~~~~~~~sG~I~inG~~~~~~~~~~i~yv~Q~~~l~ 152 (659)
T PLN03211 76 RQIQERTILNGVTGMASPGE---ILAVLGPSGSGKSTLLNALAGRIQGNNFTGTILANNRKPTKQILKRTGFVTQDDILY 152 (659)
T ss_pred ccCCCCeeeeCCEEEEECCE---EEEEECCCCCCHHHHHHHHhCCCCCCceeEEEEECCEECchhhccceEEECcccccC
Confidence 34456789999999999999 99999999999999999999998 53 899999997532 24578999999999
Q ss_pred chhhHHHHHHhhhc---Ccc---------c-------cccc-c-----cccccccccceeeecCCccEEEEecceeeccc
Q 006117 119 DYDTLLENIRGLKE---GKA---------V-------QVPI-Y-----DFKSSSRIGYRTLEVPSSRIVIIEGIYALSEK 173 (660)
Q Consensus 119 d~~tl~e~L~~L~~---Gk~---------I-------~~Pi-y-----D~s~~~rs~~~~~~v~~a~VVIVEGilaL~de 173 (660)
+..++.|++..... ... + ..+. . +......++++..++..+..++-++.+++.||
T Consensus 153 ~~lTV~E~l~~~a~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~t~vg~~~~~~LSgGerqRv~ia~aL~~~P~iLlLDE 232 (659)
T PLN03211 153 PHLTVRETLVFCSLLRLPKSLTKQEKILVAESVISELGLTKCENTIIGNSFIRGISGGERKRVSIAHEMLINPSLLILDE 232 (659)
T ss_pred CcCCHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHHHcCChhhcCceeCCCCCCCcChhhhhHHHHHHHHHhCCCEEEEeC
Confidence 98999999864211 000 0 0010 0 11123356678888888889999999999999
Q ss_pred ccCCCCEEEEEEcChhHHHHHHHHHHHHHhCCCHHH
Q 006117 174 LRPLIDLRVSVTGGVHFDLVKRVFRDIQRVGQEPEE 209 (660)
Q Consensus 174 Lr~llDlkIfVdad~dirLiRRI~RDv~eRGrs~E~ 209 (660)
+...+|. .....+.++.+++.+.|++.--
T Consensus 233 PtsgLD~-------~~~~~l~~~L~~l~~~g~TvI~ 261 (659)
T PLN03211 233 PTSGLDA-------TAAYRLVLTLGSLAQKGKTIVT 261 (659)
T ss_pred CCCCcCH-------HHHHHHHHHHHHHHhCCCEEEE
Confidence 9999997 3334445555555555666433
No 314
>PRK11160 cysteine/glutathione ABC transporter membrane/ATP-binding component; Reviewed
Probab=99.17 E-value=1.2e-11 Score=141.52 Aligned_cols=137 Identities=15% Similarity=0.113 Sum_probs=105.5
Q ss_pred cceeeeecC--ceEEEEecceeeccCCcceEEEEECCCCCcHHHHHHHHHHhC-CCceEEEecCccccc-------cccc
Q 006117 40 EDTLSFEKG--FFIVIRACQLLAQKNHGIILVGVAGPSGAGKTVFTEKVLNFM-PSIAVITMDNYNDSS-------RIID 109 (660)
Q Consensus 40 ~~~ls~~~g--~~~vL~~Isl~i~~ge~~~IIGI~GpSGSGKSTLak~L~~lL-p~~g~I~lDg~~~~~-------~~i~ 109 (660)
-++++|.++ ...+|++++|.+++|+ .++|+|+||||||||++.|++++ |+.|.|.+||.+... +.++
T Consensus 341 ~~~v~f~y~~~~~~il~~i~~~i~~G~---~~aivG~sGsGKSTL~~ll~g~~~p~~G~I~i~g~~i~~~~~~~~r~~i~ 417 (574)
T PRK11160 341 LNNVSFTYPDQPQPVLKGLSLQIKAGE---KVALLGRTGCGKSTLLQLLTRAWDPQQGEILLNGQPIADYSEAALRQAIS 417 (574)
T ss_pred EEEEEEECCCCCCcceecceEEECCCC---EEEEECCCCCCHHHHHHHHhcCCCCCCceEEECCEEhhhCCHHHHHhhee
Confidence 455666653 2469999999999999 99999999999999999999998 899999999975432 4578
Q ss_pred ccCCCCCCCchhhHHHHHHhhhcC----------------cccccc-cccccc----cccccceeeecCCccEEEEecce
Q 006117 110 GNFDDPRLTDYDTLLENIRGLKEG----------------KAVQVP-IYDFKS----SSRIGYRTLEVPSSRIVIIEGIY 168 (660)
Q Consensus 110 ~vfq~p~l~d~~tl~e~L~~L~~G----------------k~I~~P-iyD~s~----~~rs~~~~~~v~~a~VVIVEGil 168 (660)
+++|++.+|+ .++++|+...... +.+..| -||-.. ...++++.+++..++.++-++..
T Consensus 418 ~v~Q~~~lf~-~ti~~Ni~~~~~~~~~~~i~~al~~~~l~~~i~~p~GldT~vge~g~~LSgGqrqRialARall~~~~i 496 (574)
T PRK11160 418 VVSQRVHLFS-ATLRDNLLLAAPNASDEALIEVLQQVGLEKLLEDDKGLNAWLGEGGRQLSGGEQRRLGIARALLHDAPL 496 (574)
T ss_pred EEcccchhhc-ccHHHHhhcCCCccCHHHHHHHHHHcCCHHHHcCccccCchhcCCCCCCCHHHHHHHHHHHHHhcCCCE
Confidence 9999999987 5899998643211 011112 123222 22456788889999999999999
Q ss_pred eecccccCCCCE
Q 006117 169 ALSEKLRPLIDL 180 (660)
Q Consensus 169 aL~deLr~llDl 180 (660)
++.||+...+|.
T Consensus 497 lilDE~ts~lD~ 508 (574)
T PRK11160 497 LLLDEPTEGLDA 508 (574)
T ss_pred EEEeCCcccCCH
Confidence 999999999986
No 315
>PRK14252 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.17 E-value=5.7e-11 Score=122.90 Aligned_cols=137 Identities=16% Similarity=0.185 Sum_probs=100.4
Q ss_pred cceeeeecCceEEEEecceeeccCCcceEEEEECCCCCcHHHHHHHHHHhC-C-----CceEEEecCcccc---------
Q 006117 40 EDTLSFEKGFFIVIRACQLLAQKNHGIILVGVAGPSGAGKTVFTEKVLNFM-P-----SIAVITMDNYNDS--------- 104 (660)
Q Consensus 40 ~~~ls~~~g~~~vL~~Isl~i~~ge~~~IIGI~GpSGSGKSTLak~L~~lL-p-----~~g~I~lDg~~~~--------- 104 (660)
.+++++.++...++++++|.+++|+ +++|+|+||||||||+++|++++ | ..|.|.++|....
T Consensus 19 ~~~l~~~~~~~~vl~~vs~~i~~Ge---~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~sG~i~~~g~~~~~~~~~~~~~ 95 (265)
T PRK14252 19 VNKLNFYYGGYQALKNINMMVHEKQ---VTALIGPSGCGKSTFLRCFNRMHDLYPGNHYEGEIILHPDNVNILSPEVDPI 95 (265)
T ss_pred EEEEEEEECCeeeeeeeEEEEcCCc---EEEEECCCCCCHHHHHHHHhcccCCCCCCCcccEEEEcCccccccccccCHH
Confidence 3555565566689999999999999 99999999999999999999987 3 5899999874321
Q ss_pred --cccccccCCCCCCCchhhHHHHHHhhhc--C--------cc-------ccc-----ccccccccccccceeeecCCcc
Q 006117 105 --SRIIDGNFDDPRLTDYDTLLENIRGLKE--G--------KA-------VQV-----PIYDFKSSSRIGYRTLEVPSSR 160 (660)
Q Consensus 105 --~~~i~~vfq~p~l~d~~tl~e~L~~L~~--G--------k~-------I~~-----PiyD~s~~~rs~~~~~~v~~a~ 160 (660)
.+.+++++|++.+++. ++.+++..... + +. ... +..+......++++..++..++
T Consensus 96 ~~~~~i~~~~q~~~~~~~-tv~eni~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~l~~~~~~~~~~LS~G~~qrv~lar 174 (265)
T PRK14252 96 EVRMRISMVFQKPNPFPK-SIFENVAYGLRIRGVKRRSILEERVENALRNAALWDEVKDRLGDLAFNLSGGQQQRLCIAR 174 (265)
T ss_pred HHhccEEEEccCCcCCcc-hHHHHHHhHHHHcCCChHHHHHHHHHHHHHHcCCchhhhHHHhCCcccCCHHHHHHHHHHH
Confidence 2347889999988875 88888853211 1 00 000 1112223344556677777888
Q ss_pred EEEEecceeecccccCCCCE
Q 006117 161 IVIIEGIYALSEKLRPLIDL 180 (660)
Q Consensus 161 VVIVEGilaL~deLr~llDl 180 (660)
.++.++.+++.||+...+|.
T Consensus 175 al~~~p~llllDEPt~gLD~ 194 (265)
T PRK14252 175 ALATDPEILLFDEPTSALDP 194 (265)
T ss_pred HHHcCCCEEEEeCCCccCCH
Confidence 88889999999999999986
No 316
>PRK14246 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.16 E-value=4.5e-11 Score=123.59 Aligned_cols=138 Identities=17% Similarity=0.222 Sum_probs=100.9
Q ss_pred cceeeeecCceEEEEecceeeccCCcceEEEEECCCCCcHHHHHHHHHHhC-CCceEEEecC------cccc-------c
Q 006117 40 EDTLSFEKGFFIVIRACQLLAQKNHGIILVGVAGPSGAGKTVFTEKVLNFM-PSIAVITMDN------YNDS-------S 105 (660)
Q Consensus 40 ~~~ls~~~g~~~vL~~Isl~i~~ge~~~IIGI~GpSGSGKSTLak~L~~lL-p~~g~I~lDg------~~~~-------~ 105 (660)
.+++++.++...++++++|.+.+|+ +++|+|+||||||||+++|++.. |..|.|.++| .... .
T Consensus 13 ~~~~~~~~~~~~~l~~vs~~i~~Ge---~~~i~G~nGsGKSTLl~~iaG~~~~~~G~v~~~G~~~~~g~~~~~~~~~~~~ 89 (257)
T PRK14246 13 ISRLYLYINDKAILKDITIKIPNNS---IFGIMGPSGSGKSTLLKVLNRLIEIYDSKIKVDGKVLYFGKDIFQIDAIKLR 89 (257)
T ss_pred eeeEEEecCCceeEeceEEEEcCCC---EEEEECCCCCCHHHHHHHHhCCCCCCcCceeEcCEEEECCcccccCCHHHHh
Confidence 3555566677889999999999999 99999999999999999999998 6776555554 3221 1
Q ss_pred ccccccCCCCCCCchhhHHHHHHhhhc--C---c-c-----------ccc-----ccccccccccccceeeecCCccEEE
Q 006117 106 RIIDGNFDDPRLTDYDTLLENIRGLKE--G---K-A-----------VQV-----PIYDFKSSSRIGYRTLEVPSSRIVI 163 (660)
Q Consensus 106 ~~i~~vfq~p~l~d~~tl~e~L~~L~~--G---k-~-----------I~~-----PiyD~s~~~rs~~~~~~v~~a~VVI 163 (660)
..+++++|++.+++..++.+++..... + . . ... ...+...+..++++.+++..++.++
T Consensus 90 ~~i~~~~q~~~~~~~~tv~~nl~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~LS~G~~qrl~laral~ 169 (257)
T PRK14246 90 KEVGMVFQQPNPFPHLSIYDNIAYPLKSHGIKEKREIKKIVEECLRKVGLWKEVYDRLNSPASQLSGGQQQRLTIARALA 169 (257)
T ss_pred cceEEEccCCccCCCCcHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHcCCCccchhhhcCCcccCCHHHHHHHHHHHHHH
Confidence 347899999998887888888863211 1 0 0 000 0112233344556777778888899
Q ss_pred EecceeecccccCCCCE
Q 006117 164 IEGIYALSEKLRPLIDL 180 (660)
Q Consensus 164 VEGilaL~deLr~llDl 180 (660)
-++.+++.||+...+|.
T Consensus 170 ~~P~llllDEPt~~LD~ 186 (257)
T PRK14246 170 LKPKVLLMDEPTSMIDI 186 (257)
T ss_pred cCCCEEEEcCCCccCCH
Confidence 99999999999999997
No 317
>PRK14733 coaE dephospho-CoA kinase; Provisional
Probab=99.16 E-value=6e-11 Score=119.46 Aligned_cols=162 Identities=11% Similarity=0.099 Sum_probs=102.5
Q ss_pred cceEEEEECCCCCcHHHHHHHHHHhCCCceEEEecCccc----cc---cc----ccc-cCCCCCCCchhhHHHHHHh---
Q 006117 65 GIILVGVAGPSGAGKTVFTEKVLNFMPSIAVITMDNYND----SS---RI----IDG-NFDDPRLTDYDTLLENIRG--- 129 (660)
Q Consensus 65 ~~~IIGI~GpSGSGKSTLak~L~~lLp~~g~I~lDg~~~----~~---~~----i~~-vfq~p~l~d~~tl~e~L~~--- 129 (660)
.|++|||+|+.||||||+++.+...+ +...++.|.... .. .. .+- +++ .+-.|...+.+.+..
T Consensus 5 ~~~~IglTG~iGsGKStv~~~l~~~l-g~~vidaD~i~~~l~~~~~~~~~i~~~fG~~i~~-~g~idR~~L~~~vF~d~~ 82 (204)
T PRK14733 5 NTYPIGITGGIASGKSTATRILKEKL-NLNVVCADTISREITKKPSVIKKIAEKFGDEIVM-NKQINRAMLRAIITESKE 82 (204)
T ss_pred ceEEEEEECCCCCCHHHHHHHHHHHc-CCeEEeccHHHHHHHCchHHHHHHHHHhCHHhcc-CCCcCHHHHHHHHhCCHH
Confidence 36799999999999999999999866 344676665411 00 00 110 111 234555555555432
Q ss_pred -hhcCcccccccccccccccccceeeecCCccEEEEecceeecccc--cCCCCEEEEEEcChhHHHHHHHHHHHHHhCCC
Q 006117 130 -LKEGKAVQVPIYDFKSSSRIGYRTLEVPSSRIVIIEGIYALSEKL--RPLIDLRVSVTGGVHFDLVKRVFRDIQRVGQE 206 (660)
Q Consensus 130 -L~~Gk~I~~PiyD~s~~~rs~~~~~~v~~a~VVIVEGilaL~deL--r~llDlkIfVdad~dirLiRRI~RDv~eRGrs 206 (660)
+..-+.+.+|........... .....++++|.++++.... ...||..|+|++|.+++..|-+. ++|.+
T Consensus 83 ~~~~Le~i~HP~V~~~~~~~~~-----~~~~~~vv~eipLL~E~~~~~~~~~D~vi~V~a~~e~ri~Rl~~----Rd~~s 153 (204)
T PRK14733 83 AKKWLEDYLHPVINKEIKKQVK-----ESDTVMTIVDIPLLGPYNFRHYDYLKKVIVIKADLETRIRRLME----RDGKN 153 (204)
T ss_pred HHHHHHhhhhHHHHHHHHHHHH-----hcCCCeEEEEechhhhccCchhhhCCEEEEEECCHHHHHHHHHH----cCCCC
Confidence 222244556654433322211 1133589999999987654 56899999999998876554444 45889
Q ss_pred HHHHHHHHHhccccchhhcccCCcCcCcEEEeCCC-CC
Q 006117 207 PEEIIHQISETVYPMYKAFIEPDLQTAHIKIINKF-NP 243 (660)
Q Consensus 207 ~E~Vl~qy~~~v~P~~~~fIeP~k~~ADiII~N~~-~p 243 (660)
.+++..++.. .+|. +..++.||+||.|++ +.
T Consensus 154 ~~~a~~ri~~-Q~~~-----eek~~~aD~VI~N~g~~~ 185 (204)
T PRK14733 154 RQQAVAFINL-QISD-----KEREKIADFVIDNTELTD 185 (204)
T ss_pred HHHHHHHHHh-CCCH-----HHHHHhCCEEEECcCCCH
Confidence 9998887733 3443 344689999999987 54
No 318
>COG0396 sufC Cysteine desulfurase activator ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=99.16 E-value=1.5e-11 Score=124.73 Aligned_cols=158 Identities=13% Similarity=0.142 Sum_probs=113.3
Q ss_pred cceeeeecCc-eEEEEecceeeccCCcceEEEEECCCCCcHHHHHHHHHHhC---CCceEEEecCccccc--------cc
Q 006117 40 EDTLSFEKGF-FIVIRACQLLAQKNHGIILVGVAGPSGAGKTVFTEKVLNFM---PSIAVITMDNYNDSS--------RI 107 (660)
Q Consensus 40 ~~~ls~~~g~-~~vL~~Isl~i~~ge~~~IIGI~GpSGSGKSTLak~L~~lL---p~~g~I~lDg~~~~~--------~~ 107 (660)
.++++.+-+. ..+|+++++.++.|+ +.+|.||||||||||+..|++.- ...|.|.+||.+... ..
T Consensus 6 I~dLhv~v~~~keILkgvnL~v~~GE---vhaiMGPNGsGKSTLa~~i~G~p~Y~Vt~G~I~~~GedI~~l~~~ERAr~G 82 (251)
T COG0396 6 IKDLHVEVEGKKEILKGVNLTVKEGE---VHAIMGPNGSGKSTLAYTIMGHPKYEVTEGEILFDGEDILELSPDERARAG 82 (251)
T ss_pred EeeeEEEecCchhhhcCcceeEcCCc---EEEEECCCCCCHHHHHHHHhCCCCceEecceEEECCcccccCCHhHHHhcC
Confidence 3455555555 489999999999999 99999999999999999999985 478999999986432 33
Q ss_pred ccccCCCCCCCchhhHHHHHHhhhc----Ccc---------------cccc--cccccc-cccccceeeecCCccEEEEe
Q 006117 108 IDGNFDDPRLTDYDTLLENIRGLKE----GKA---------------VQVP--IYDFKS-SSRIGYRTLEVPSSRIVIIE 165 (660)
Q Consensus 108 i~~vfq~p~l~d~~tl~e~L~~L~~----Gk~---------------I~~P--iyD~s~-~~rs~~~~~~v~~a~VVIVE 165 (660)
+...||.|.-++.-++.+.|..-.+ ... +..+ ..++.. ...++++..+.....++++|
T Consensus 83 ifLafQ~P~ei~GV~~~~fLr~a~n~~~~~~~~~~~~~~~~~e~~~~l~~~~~~l~R~vN~GFSGGEkKR~EilQ~~~le 162 (251)
T COG0396 83 IFLAFQYPVEIPGVTNSDFLRAAMNARRGARGILPEFIKELKEKAELLGLDEEFLERYVNEGFSGGEKKRNEILQLLLLE 162 (251)
T ss_pred CEEeecCCccCCCeeHHHHHHHHHHhhhccccccHHHHHHHHHHHHHcCCCHHHhhcccCCCcCcchHHHHHHHHHHhcC
Confidence 5568999988877777766653211 111 1111 111111 12455666677777889999
Q ss_pred cceeecccccCCCCEEEEEEcChhHHHHHHHHHHHHHhCCCH
Q 006117 166 GIYALSEKLRPLIDLRVSVTGGVHFDLVKRVFRDIQRVGQEP 207 (660)
Q Consensus 166 GilaL~deLr~llDlkIfVdad~dirLiRRI~RDv~eRGrs~ 207 (660)
+.+++.||+...+|+ ...+.+-+....+.+.|.+.
T Consensus 163 Pkl~ILDE~DSGLDI-------dalk~V~~~i~~lr~~~~~~ 197 (251)
T COG0396 163 PKLAILDEPDSGLDI-------DALKIVAEGINALREEGRGV 197 (251)
T ss_pred CCEEEecCCCcCccH-------HHHHHHHHHHHHHhcCCCeE
Confidence 999999999999998 45566666666666666554
No 319
>PRK14734 coaE dephospho-CoA kinase; Provisional
Probab=99.16 E-value=9.9e-11 Score=117.19 Aligned_cols=163 Identities=15% Similarity=0.194 Sum_probs=102.8
Q ss_pred eEEEEECCCCCcHHHHHHHHHHhCCCceEEEecCcc----cc-c-------ccccccC-CCCCCCchhhHHHHHHh----
Q 006117 67 ILVGVAGPSGAGKTVFTEKVLNFMPSIAVITMDNYN----DS-S-------RIIDGNF-DDPRLTDYDTLLENIRG---- 129 (660)
Q Consensus 67 ~IIGI~GpSGSGKSTLak~L~~lLp~~g~I~lDg~~----~~-~-------~~i~~vf-q~p~l~d~~tl~e~L~~---- 129 (660)
.+|||+|++||||||+++.|+.. +.-.|+.|... .. . ...+..+ ...+..|...+.+.+..
T Consensus 2 ~~igitG~igsGKst~~~~l~~~--g~~vid~D~i~~~~~~~~~~~~~~l~~~fg~~~~~~~g~idR~~L~~~vF~~~~~ 79 (200)
T PRK14734 2 LRIGLTGGIGSGKSTVADLLSSE--GFLIVDADQVARDIVEPGQPALAELAEAFGDDILNPDGTLDRAGLAAKAFASPEQ 79 (200)
T ss_pred eEEEEECCCCCCHHHHHHHHHHC--CCeEEeCcHHHHHHHhcCCHHHHHHHHHhCccccCCCChhhHHHHHHHHhCCHHH
Confidence 58999999999999999999973 45566666421 11 1 1122222 22344555555554432
Q ss_pred hhcCcccccccccccccccccceeeecCCccEEEEecceeecccccCCCCEEEEEEcChhHHHHHHHHHHHHHhCCCHHH
Q 006117 130 LKEGKAVQVPIYDFKSSSRIGYRTLEVPSSRIVIIEGIYALSEKLRPLIDLRVSVTGGVHFDLVKRVFRDIQRVGQEPEE 209 (660)
Q Consensus 130 L~~Gk~I~~PiyD~s~~~rs~~~~~~v~~a~VVIVEGilaL~deLr~llDlkIfVdad~dirLiRRI~RDv~eRGrs~E~ 209 (660)
+..-+.+.+|........+.. ...-....++++|.++++...+...+|.+|||++|.++++.|-+. ++|.+.++
T Consensus 80 ~~~le~i~hP~v~~~~~~~~~--~~~~~~~~~vv~e~plL~e~g~~~~~D~vi~V~a~~e~ri~Rl~~----R~g~s~e~ 153 (200)
T PRK14734 80 TALLNAITHPRIAEETARRFN--EARAQGAKVAVYDMPLLVEKGLDRKMDLVVVVDVDVEERVRRLVE----KRGLDEDD 153 (200)
T ss_pred HHHHHHhhCHHHHHHHHHHHH--HHHhcCCCEEEEEeeceeEcCccccCCeEEEEECCHHHHHHHHHH----cCCCCHHH
Confidence 222234555643222211110 001123468999999999888888999999999999886544443 36899999
Q ss_pred HHHHHHhccccchhhcccCCcCcCcEEEeCCCCC
Q 006117 210 IIHQISETVYPMYKAFIEPDLQTAHIKIINKFNP 243 (660)
Q Consensus 210 Vl~qy~~~v~P~~~~fIeP~k~~ADiII~N~~~p 243 (660)
+..++..++.+.+ .+..||++|.|++++
T Consensus 154 ~~~ri~~Q~~~~~------k~~~ad~vI~N~g~~ 181 (200)
T PRK14734 154 ARRRIAAQIPDDV------RLKAADIVVDNNGTR 181 (200)
T ss_pred HHHHHHhcCCHHH------HHHhCCEEEECcCCH
Confidence 9888855543332 247899999988765
No 320
>cd03222 ABC_RNaseL_inhibitor The ABC ATPase RNase L inhibitor (RLI) is a key enzyme in ribosomal biogenesis, formation of translation preinitiation complexes, and assembly of HIV capsids. RLI's are not transport proteins, and thus cluster with a group of soluble proteins that lack the transmembrane components commonly found in other members of the family. Structurally, RLI's have an N-terminal Fe-S domain and two nucleotide-binding domains, which are arranged to form two composite active sites in their interface cleft. RLI is one of the most conserved enzymes between archaea and eukaryotes with a sequence identity more than 48%. The high degree of evolutionary conservation suggests that RLI performs a central role in archaeal and eukaryotic physiology.
Probab=99.16 E-value=3.9e-11 Score=118.21 Aligned_cols=100 Identities=15% Similarity=0.193 Sum_probs=80.6
Q ss_pred ceeeeecCceEEEEecceeeccCCcceEEEEECCCCCcHHHHHHHHHHhC-CCceEEEecCcccccccccccCCCCCCCc
Q 006117 41 DTLSFEKGFFIVIRACQLLAQKNHGIILVGVAGPSGAGKTVFTEKVLNFM-PSIAVITMDNYNDSSRIIDGNFDDPRLTD 119 (660)
Q Consensus 41 ~~ls~~~g~~~vL~~Isl~i~~ge~~~IIGI~GpSGSGKSTLak~L~~lL-p~~g~I~lDg~~~~~~~i~~vfq~p~l~d 119 (660)
.++++.++...+++++ +.+++|+ +++|+|+||||||||+++|++++ |+.|.|.+++.. +++.+|++.
T Consensus 4 ~~l~~~~~~~~~l~~~-~~i~~Ge---~~~l~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~-----i~~~~q~~~--- 71 (177)
T cd03222 4 PDCVKRYGVFFLLVEL-GVVKEGE---VIGIVGPNGTGKTTAVKILAGQLIPNGDNDEWDGIT-----PVYKPQYID--- 71 (177)
T ss_pred CCeEEEECCEEEEccC-cEECCCC---EEEEECCCCChHHHHHHHHHcCCCCCCcEEEECCEE-----EEEEcccCC---
Confidence 3455666777888885 8999999 99999999999999999999998 789999998752 455565432
Q ss_pred hhhHHHHHHhhhcCcccccccccccccccccceeeecCCccEEEEecceeecccccCCCCE
Q 006117 120 YDTLLENIRGLKEGKAVQVPIYDFKSSSRIGYRTLEVPSSRIVIIEGIYALSEKLRPLIDL 180 (660)
Q Consensus 120 ~~tl~e~L~~L~~Gk~I~~PiyD~s~~~rs~~~~~~v~~a~VVIVEGilaL~deLr~llDl 180 (660)
.++++.+++..++.++.++.+++.||+...+|.
T Consensus 72 ----------------------------LSgGq~qrv~laral~~~p~lllLDEPts~LD~ 104 (177)
T cd03222 72 ----------------------------LSGGELQRVAIAAALLRNATFYLFDEPSAYLDI 104 (177)
T ss_pred ----------------------------CCHHHHHHHHHHHHHhcCCCEEEEECCcccCCH
Confidence 334556667777888888999999999999997
No 321
>TIGR02857 CydD thiol reductant ABC exporter, CydD subunit. Unfortunately, the gene symbol nomenclature adopted based on this operon in B. subtilis assigns cydC to the third gene in the operon where this gene is actually homologous to the E. coli cydD gene. We have chosen to name all homologs in this family in accordance with the precedence of publication of the E. coli name, CydD
Probab=99.16 E-value=1.9e-11 Score=138.10 Aligned_cols=137 Identities=22% Similarity=0.239 Sum_probs=104.9
Q ss_pred cceeeeecCc--eEEEEecceeeccCCcceEEEEECCCCCcHHHHHHHHHHhC-CCceEEEecCccccc-------cccc
Q 006117 40 EDTLSFEKGF--FIVIRACQLLAQKNHGIILVGVAGPSGAGKTVFTEKVLNFM-PSIAVITMDNYNDSS-------RIID 109 (660)
Q Consensus 40 ~~~ls~~~g~--~~vL~~Isl~i~~ge~~~IIGI~GpSGSGKSTLak~L~~lL-p~~g~I~lDg~~~~~-------~~i~ 109 (660)
-++++|.++. ..++++++|.+++|+ .++|+|+||||||||++.|++++ |..|.|.+||.+... +.++
T Consensus 323 ~~~v~f~y~~~~~~il~~i~l~i~~G~---~~~ivG~sGsGKSTL~~ll~g~~~~~~G~I~~~g~~i~~~~~~~lr~~i~ 399 (529)
T TIGR02857 323 FSGLSVAYPGRRAPALRPVSFTVPPGE---RVALVGPSGAGKSTLLNLLLGFVDPTEGSIAVNGVPLADADADSWRDQIA 399 (529)
T ss_pred EEEEEEECCCCCcccccceeEEECCCC---EEEEECCCCCCHHHHHHHHhcCCCCCCcEEEECCEehhhCCHHHHHhheE
Confidence 3455565543 469999999999999 99999999999999999999998 789999999975432 4588
Q ss_pred ccCCCCCCCchhhHHHHHHhhhcC---cc-------------c-ccc-cccccc----cccccceeeecCCccEEEEecc
Q 006117 110 GNFDDPRLTDYDTLLENIRGLKEG---KA-------------V-QVP-IYDFKS----SSRIGYRTLEVPSSRIVIIEGI 167 (660)
Q Consensus 110 ~vfq~p~l~d~~tl~e~L~~L~~G---k~-------------I-~~P-iyD~s~----~~rs~~~~~~v~~a~VVIVEGi 167 (660)
+++|+|.+|+ .++++|+...... +. + ..| -||-.. ...++++.+++..++.++-++.
T Consensus 400 ~v~Q~~~lf~-~ti~~Ni~~~~~~~~~~~i~~a~~~~~l~~~i~~lp~Gldt~v~e~g~~LSgGq~qri~laRal~~~~~ 478 (529)
T TIGR02857 400 WVPQHPFLFA-GTIAENIRLARPDASDAEIRRALERAGLDEFVAALPQGLDTLIGEGGAGLSGGQAQRLALARAFLRDAP 478 (529)
T ss_pred EEcCCCcccC-cCHHHHHhccCCCCCHHHHHHHHHHcCcHHHHHhCcccccchhccccccCCHHHHHHHHHHHHHhcCCC
Confidence 9999999997 6999998642211 00 0 011 122222 2345678888899999999999
Q ss_pred eeecccccCCCCE
Q 006117 168 YALSEKLRPLIDL 180 (660)
Q Consensus 168 laL~deLr~llDl 180 (660)
.++.||+...+|.
T Consensus 479 ililDE~ts~lD~ 491 (529)
T TIGR02857 479 LLLLDEPTAHLDA 491 (529)
T ss_pred EEEEeCcccccCH
Confidence 9999999999987
No 322
>TIGR01842 type_I_sec_PrtD type I secretion system ABC transporter, PrtD family. Type I protein secretion is a system in some Gram-negative bacteria to export proteins (often proteases) across both inner and outer membranes to the extracellular medium. This is one of three proteins of the type I secretion apparatus. Targeted proteins are not cleaved at the N-terminus, but rather carry signals located toward the extreme C-terminus to direct type I secretion.
Probab=99.16 E-value=2.3e-11 Score=138.04 Aligned_cols=136 Identities=18% Similarity=0.260 Sum_probs=103.7
Q ss_pred ceeeeecC--ceEEEEecceeeccCCcceEEEEECCCCCcHHHHHHHHHHhC-CCceEEEecCcccc-------cccccc
Q 006117 41 DTLSFEKG--FFIVIRACQLLAQKNHGIILVGVAGPSGAGKTVFTEKVLNFM-PSIAVITMDNYNDS-------SRIIDG 110 (660)
Q Consensus 41 ~~ls~~~g--~~~vL~~Isl~i~~ge~~~IIGI~GpSGSGKSTLak~L~~lL-p~~g~I~lDg~~~~-------~~~i~~ 110 (660)
++++|.++ ...++++++|.+++|+ .++|+|+||||||||+++|++.+ |..|.|.+||.+.. .+.+++
T Consensus 320 ~~v~~~y~~~~~~~l~~~~~~i~~G~---~~~ivG~sGsGKSTL~~ll~g~~~~~~G~i~~~g~~i~~~~~~~~~~~i~~ 396 (544)
T TIGR01842 320 ENVTIVPPGGKKPTLRGISFRLQAGE---ALAIIGPSGSGKSTLARLIVGIWPPTSGSVRLDGADLKQWDRETFGKHIGY 396 (544)
T ss_pred EEEEEEcCCCCccccccceEEEcCCC---EEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEehhhCCHHHHhhheEE
Confidence 45555553 3578999999999999 99999999999999999999998 88999999997532 245789
Q ss_pred cCCCCCCCchhhHHHHHHhhhcC---cc-------------c-ccc-ccccc----ccccccceeeecCCccEEEEecce
Q 006117 111 NFDDPRLTDYDTLLENIRGLKEG---KA-------------V-QVP-IYDFK----SSSRIGYRTLEVPSSRIVIIEGIY 168 (660)
Q Consensus 111 vfq~p~l~d~~tl~e~L~~L~~G---k~-------------I-~~P-iyD~s----~~~rs~~~~~~v~~a~VVIVEGil 168 (660)
++|+|.+|+ .++++|+...... +. + ..| .++.. ....++++.+++..++.++-++.+
T Consensus 397 v~q~~~lf~-~ti~~Ni~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~gl~t~~~~~g~~LSgGq~qrl~lARall~~~~i 475 (544)
T TIGR01842 397 LPQDVELFP-GTVAENIARFGENADPEKIIEAAKLAGVHELILRLPDGYDTVIGPGGATLSGGQRQRIALARALYGDPKL 475 (544)
T ss_pred ecCCccccc-ccHHHHHhccCCCCCHHHHHHHHHHhChHHHHHhCccccccccCCCcCCCCHHHHHHHHHHHHHhcCCCE
Confidence 999999987 4889998632210 00 0 011 12221 123456788888899999999999
Q ss_pred eecccccCCCCE
Q 006117 169 ALSEKLRPLIDL 180 (660)
Q Consensus 169 aL~deLr~llDl 180 (660)
++.||+...+|.
T Consensus 476 lilDEpts~LD~ 487 (544)
T TIGR01842 476 VVLDEPNSNLDE 487 (544)
T ss_pred EEEeCCccccCH
Confidence 999999999986
No 323
>PRK14731 coaE dephospho-CoA kinase; Provisional
Probab=99.16 E-value=4.8e-11 Score=119.92 Aligned_cols=166 Identities=19% Similarity=0.199 Sum_probs=97.8
Q ss_pred CcceEEEEECCCCCcHHHHHHHHHHhCCCceEEEecCcc----cc-----c---ccccc-cC--CCCC--CCchhhHHHH
Q 006117 64 HGIILVGVAGPSGAGKTVFTEKVLNFMPSIAVITMDNYN----DS-----S---RIIDG-NF--DDPR--LTDYDTLLEN 126 (660)
Q Consensus 64 e~~~IIGI~GpSGSGKSTLak~L~~lLp~~g~I~lDg~~----~~-----~---~~i~~-vf--q~p~--l~d~~tl~e~ 126 (660)
..+++|||+|++||||||++++|.+. +..+++.|... .. . ...+. ++ +... .+|...+.+.
T Consensus 3 ~~~~~igitG~igsGKSt~~~~l~~~--g~~v~d~D~i~~~~~~~~~~~~~~~~~~fg~~i~~~~~~~~~~idr~~l~~~ 80 (208)
T PRK14731 3 SLPFLVGVTGGIGSGKSTVCRFLAEM--GCELFEADRVAKELQVTDPEVIEGIKKLFGKDVYSKDASGKLLLDRKRIAQV 80 (208)
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHHC--CCeEEeccHHHHHHcCCcHHHHHHHHHHhCHHHhCCCCCCCcccCHHHHHHH
Confidence 44689999999999999999999984 45566666321 00 0 00111 11 1111 1343333333
Q ss_pred HH----hhhcCcccccccccccccccccceeeecCCccEEEEecceeecccccCCCCEEEEEEcChhHHHHHHHHHHHHH
Q 006117 127 IR----GLKEGKAVQVPIYDFKSSSRIGYRTLEVPSSRIVIIEGIYALSEKLRPLIDLRVSVTGGVHFDLVKRVFRDIQR 202 (660)
Q Consensus 127 L~----~L~~Gk~I~~PiyD~s~~~rs~~~~~~v~~a~VVIVEGilaL~deLr~llDlkIfVdad~dirLiRRI~RDv~e 202 (660)
+. .+..-+.+.+|........... ........++++|+++++...+...||..|+|++|.+++..|-+.|
T Consensus 81 vf~~~~~~~~l~~i~hp~i~~~~~~~i~--~~~~~~~~vvv~e~pLL~e~~~~~~~d~ii~V~a~~e~~~~Rl~~R---- 154 (208)
T PRK14731 81 VFSDPEKLGALNRLIHPKVFAAFQRAVD--RAARRGKRILVKEAAILFESGGDAGLDFIVVVAADTELRLERAVQR---- 154 (208)
T ss_pred HhCCHHHHHHHHHHHCHHHHHHHHHHHH--HHHhcCCCEEEEEeeeeeecCchhcCCeEEEEECCHHHHHHHHHHc----
Confidence 22 1222233445533222211111 1111234689999999988788889999999999998876665555
Q ss_pred hCCCHHHHHHHHHhccccchhhcccCCcCcCcEEEeCCCCC
Q 006117 203 VGQEPEEIIHQISETVYPMYKAFIEPDLQTAHIKIINKFNP 243 (660)
Q Consensus 203 RGrs~E~Vl~qy~~~v~P~~~~fIeP~k~~ADiII~N~~~p 243 (660)
.+.+.+++..++.. .++..+. .+.||++|+|++++
T Consensus 155 ~~~s~e~~~~Ri~~-q~~~~~~-----~~~ad~vI~N~g~~ 189 (208)
T PRK14731 155 GMGSREEIRRRIAA-QWPQEKL-----IERADYVIYNNGTL 189 (208)
T ss_pred CCCCHHHHHHHHHH-cCChHHH-----HHhCCEEEECCCCH
Confidence 35677888777643 3443222 24699999988755
No 324
>PRK15064 ABC transporter ATP-binding protein; Provisional
Probab=99.15 E-value=3.3e-11 Score=136.52 Aligned_cols=136 Identities=11% Similarity=0.091 Sum_probs=104.2
Q ss_pred eccceeeeecCceEEEEecceeeccCCcceEEEEECCCCCcHHHHHHHHHHhC-CCceEEEecCcccccccccccCCCCC
Q 006117 38 PIEDTLSFEKGFFIVIRACQLLAQKNHGIILVGVAGPSGAGKTVFTEKVLNFM-PSIAVITMDNYNDSSRIIDGNFDDPR 116 (660)
Q Consensus 38 ~~~~~ls~~~g~~~vL~~Isl~i~~ge~~~IIGI~GpSGSGKSTLak~L~~lL-p~~g~I~lDg~~~~~~~i~~vfq~p~ 116 (660)
...+++++.++...++++++|.+++|+ ++||+||||||||||+++|++++ |+.|.|.+++. ..+++++|++.
T Consensus 320 l~~~~l~~~~~~~~~l~~is~~i~~Ge---~~~l~G~NGsGKSTLl~~i~G~~~p~~G~i~~~~~----~~i~~~~q~~~ 392 (530)
T PRK15064 320 LEVENLTKGFDNGPLFKNLNLLLEAGE---RLAIIGENGVGKTTLLRTLVGELEPDSGTVKWSEN----ANIGYYAQDHA 392 (530)
T ss_pred EEEEeeEEeeCCceeecCcEEEECCCC---EEEEECCCCCCHHHHHHHHhCCCCCCCeEEEECCc----eEEEEEccccc
Confidence 344566666666779999999999999 99999999999999999999998 78999998873 35788999864
Q ss_pred --CCchhhHHHHHHhhhcCc-----------cccc--ccccccccccccceeeecCCccEEEEecceeecccccCCCCE
Q 006117 117 --LTDYDTLLENIRGLKEGK-----------AVQV--PIYDFKSSSRIGYRTLEVPSSRIVIIEGIYALSEKLRPLIDL 180 (660)
Q Consensus 117 --l~d~~tl~e~L~~L~~Gk-----------~I~~--PiyD~s~~~rs~~~~~~v~~a~VVIVEGilaL~deLr~llDl 180 (660)
+++..++.+++..+.... .+.. ...+......++++.+++..+..++.++.+++.||+...+|.
T Consensus 393 ~~~~~~~t~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgGq~qrv~la~al~~~p~lllLDEPt~~LD~ 471 (530)
T PRK15064 393 YDFENDLTLFDWMSQWRQEGDDEQAVRGTLGRLLFSQDDIKKSVKVLSGGEKGRMLFGKLMMQKPNVLVMDEPTNHMDM 471 (530)
T ss_pred ccCCCCCcHHHHHHHhccCCccHHHHHHHHHHcCCChhHhcCcccccCHHHHHHHHHHHHHhcCCCEEEEcCCCCCCCH
Confidence 444567777765432100 0111 123444556677788888889999999999999999999997
No 325
>cd03288 ABCC_SUR2 The SUR domain 2. The sulfonylurea receptor SUR is an ATP binding cassette (ABC) protein of the ABCC/MRP family. Unlike other ABC proteins, it has no intrinsic transport function, neither active nor passive, but associates with the potassium channel proteins Kir6.1 or Kir6.2 to form the ATP-sensitive potassium (K(ATP)) channel. Within the channel complex, SUR serves as a regulatory subunit that fine-tunes the gating of Kir6.x in response to alterations in cellular metabolism. It constitutes a major pharmaceutical target as it binds numerous drugs, K(ATP) channel openers and blockers, capable of up- or down-regulating channel activity.
Probab=99.15 E-value=4.1e-11 Score=123.54 Aligned_cols=136 Identities=14% Similarity=0.148 Sum_probs=97.1
Q ss_pred ceeeeecCc--eEEEEecceeeccCCcceEEEEECCCCCcHHHHHHHHHHhC-CCceEEEecCcccc-------cccccc
Q 006117 41 DTLSFEKGF--FIVIRACQLLAQKNHGIILVGVAGPSGAGKTVFTEKVLNFM-PSIAVITMDNYNDS-------SRIIDG 110 (660)
Q Consensus 41 ~~ls~~~g~--~~vL~~Isl~i~~ge~~~IIGI~GpSGSGKSTLak~L~~lL-p~~g~I~lDg~~~~-------~~~i~~ 110 (660)
+++++.++. ..++++++|.+++|+ ++||+|+||||||||+++|++++ |..|.|.++|.... .+.+++
T Consensus 23 ~~l~~~~~~~~~~il~~isl~i~~Ge---~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~i~g~~i~~~~~~~~~~~i~~ 99 (257)
T cd03288 23 HDLCVRYENNLKPVLKHVKAYIKPGQ---KVGICGRTGSGKSSLSLAFFRMVDIFDGKIVIDGIDISKLPLHTLRSRLSI 99 (257)
T ss_pred EEEEEEeCCCCCcceeEEEEEEcCCC---EEEEECCCCCCHHHHHHHHHcccCCCCCeEEECCEEhhhCCHHHHhhhEEE
Confidence 334444433 468999999999999 99999999999999999999998 78999999986432 234788
Q ss_pred cCCCCCCCchhhHHHHHHhhhcCc-----------cc----c-cc-----cccccccccccceeeecCCccEEEEeccee
Q 006117 111 NFDDPRLTDYDTLLENIRGLKEGK-----------AV----Q-VP-----IYDFKSSSRIGYRTLEVPSSRIVIIEGIYA 169 (660)
Q Consensus 111 vfq~p~l~d~~tl~e~L~~L~~Gk-----------~I----~-~P-----iyD~s~~~rs~~~~~~v~~a~VVIVEGila 169 (660)
++|++.+++ .++.+++....... .+ . .| ..+......++++.+++..++.++-++.++
T Consensus 100 v~q~~~l~~-~tv~~nl~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~l~~~~~~~~~~LS~G~~qrl~laral~~~p~ll 178 (257)
T cd03288 100 ILQDPILFS-GSIRFNLDPECKCTDDRLWEALEIAQLKNMVKSLPGGLDAVVTEGGENFSVGQRQLFCLARAFVRKSSIL 178 (257)
T ss_pred ECCCCcccc-cHHHHhcCcCCCCCHHHHHHHHHHhCcHHHHhhcccccCcEeccCCCcCCHHHHHHHHHHHHHhcCCCEE
Confidence 999998776 47776653211000 00 0 00 011112234556677778888888999999
Q ss_pred ecccccCCCCE
Q 006117 170 LSEKLRPLIDL 180 (660)
Q Consensus 170 L~deLr~llDl 180 (660)
+.||+...+|.
T Consensus 179 llDEPt~gLD~ 189 (257)
T cd03288 179 IMDEATASIDM 189 (257)
T ss_pred EEeCCccCCCH
Confidence 99999999986
No 326
>KOG0055 consensus Multidrug/pheromone exporter, ABC superfamily [Secondary metabolites biosynthesis, transport and catabolism]
Probab=99.15 E-value=1.4e-11 Score=147.58 Aligned_cols=172 Identities=19% Similarity=0.268 Sum_probs=124.9
Q ss_pred ceeeeecC---ceEEEEecceeeccCCcceEEEEECCCCCcHHHHHHHHHHhC-CCceEEEecCccccc-------cccc
Q 006117 41 DTLSFEKG---FFIVIRACQLLAQKNHGIILVGVAGPSGAGKTVFTEKVLNFM-PSIAVITMDNYNDSS-------RIID 109 (660)
Q Consensus 41 ~~ls~~~g---~~~vL~~Isl~i~~ge~~~IIGI~GpSGSGKSTLak~L~~lL-p~~g~I~lDg~~~~~-------~~i~ 109 (660)
+++.|.+. ...+|++++|.+++|+ .|+|+|+|||||||+.+.|.+++ |..|.|.+||.+... ..++
T Consensus 354 ~nV~FsYPsRpdv~Il~g~sl~i~~G~---~valVG~SGsGKST~i~LL~RfydP~~G~V~idG~di~~~~~~~lr~~ig 430 (1228)
T KOG0055|consen 354 RNVCFSYPSRPDVKILKGVSLKIPSGQ---TVALVGPSGSGKSTLIQLLARFYDPTSGEVLIDGEDIRNLNLKWLRSQIG 430 (1228)
T ss_pred EEEEecCCCCCcchhhCCeEEEeCCCC---EEEEECCCCCCHHHHHHHHHHhcCCCCceEEEcCccchhcchHHHHhhcC
Confidence 34444444 3469999999999999 99999999999999999999999 999999999986543 4688
Q ss_pred ccCCCCCCCchhhHHHHHHhhhcCc---c--------------cccc-cccccccc----cccceeeecCCccEEEEecc
Q 006117 110 GNFDDPRLTDYDTLLENIRGLKEGK---A--------------VQVP-IYDFKSSS----RIGYRTLEVPSSRIVIIEGI 167 (660)
Q Consensus 110 ~vfq~p~l~d~~tl~e~L~~L~~Gk---~--------------I~~P-iyD~s~~~----rs~~~~~~v~~a~VVIVEGi 167 (660)
.++|+|.+|+ .++.||+...+..- . ...| -|+-..++ .+++++++++.++.++-++.
T Consensus 431 lV~QePvlF~-~tI~eNI~~G~~dat~~~i~~a~k~ana~~fi~~lp~g~~T~vge~g~qLSGGQKQRIAIARalv~~P~ 509 (1228)
T KOG0055|consen 431 LVSQEPVLFA-TTIRENIRYGKPDATREEIEEAAKAANAHDFILKLPDGYDTLVGERGVQLSGGQKQRIAIARALVRNPK 509 (1228)
T ss_pred eeeechhhhc-ccHHHHHhcCCCcccHHHHHHHHHHccHHHHHHhhHHhhcccccCCCCCCChHHHHHHHHHHHHHhCCC
Confidence 9999997776 78999987544220 0 1112 23333332 56789999999999999999
Q ss_pred eeecccccCCCCEEEEEEcChhHHHHHHHHHHHHHhCCCHHHHHHHHHhccccchhhcccCCcCcCcEEE
Q 006117 168 YALSEKLRPLIDLRVSVTGGVHFDLVKRVFRDIQRVGQEPEEIIHQISETVYPMYKAFIEPDLQTAHIKI 237 (660)
Q Consensus 168 laL~deLr~llDlkIfVdad~dirLiRRI~RDv~eRGrs~E~Vl~qy~~~v~P~~~~fIeP~k~~ADiII 237 (660)
.+++||....+|. .+.+........ ...|+|.--|.|+. .+.++||.|+
T Consensus 510 ILLLDEaTSaLD~-------~se~~Vq~ALd~-~~~grTTivVaHRL-------------StIrnaD~I~ 558 (1228)
T KOG0055|consen 510 ILLLDEATSALDA-------ESERVVQEALDK-ASKGRTTIVVAHRL-------------STIRNADKIA 558 (1228)
T ss_pred EEEecCcccccCH-------HHHHHHHHHHHH-hhcCCeEEEEeeeh-------------hhhhccCEEE
Confidence 9999999999997 344443333322 23477654444444 2346678776
No 327
>PRK10762 D-ribose transporter ATP binding protein; Provisional
Probab=99.15 E-value=4.9e-11 Score=134.23 Aligned_cols=147 Identities=15% Similarity=0.133 Sum_probs=108.2
Q ss_pred EEEEecceeeccCCcceEEEEECCCCCcHHHHHHHHHHhC-CCceEEEecCcccc--------cccccccCCCC---CCC
Q 006117 51 IVIRACQLLAQKNHGIILVGVAGPSGAGKTVFTEKVLNFM-PSIAVITMDNYNDS--------SRIIDGNFDDP---RLT 118 (660)
Q Consensus 51 ~vL~~Isl~i~~ge~~~IIGI~GpSGSGKSTLak~L~~lL-p~~g~I~lDg~~~~--------~~~i~~vfq~p---~l~ 118 (660)
.++++++|.+.+|+ ++||+|+||||||||+++|++.+ |+.|.|.++|.... .+.+++++|++ .++
T Consensus 266 ~~l~~vsl~i~~Ge---~~~liG~NGsGKSTLl~~l~G~~~p~~G~I~~~g~~i~~~~~~~~~~~~i~~v~q~~~~~~~~ 342 (501)
T PRK10762 266 PGVNDVSFTLRKGE---ILGVSGLMGAGRTELMKVLYGALPRTSGYVTLDGHEVVTRSPQDGLANGIVYISEDRKRDGLV 342 (501)
T ss_pred CCcccceEEEcCCc---EEEEecCCCCCHHHHHHHHhCCCCCCceEEEECCEECCCCCHHHHHHCCCEEecCccccCCCc
Confidence 36999999999999 99999999999999999999998 78999999986432 13478999996 467
Q ss_pred chhhHHHHHHhh-h----c--C-----c----------cccc--ccccccccccccceeeecCCccEEEEecceeecccc
Q 006117 119 DYDTLLENIRGL-K----E--G-----K----------AVQV--PIYDFKSSSRIGYRTLEVPSSRIVIIEGIYALSEKL 174 (660)
Q Consensus 119 d~~tl~e~L~~L-~----~--G-----k----------~I~~--PiyD~s~~~rs~~~~~~v~~a~VVIVEGilaL~deL 174 (660)
+..++.+++... . . + . .+.. +..+...+..++++.+++..+..++.++.+++.||+
T Consensus 343 ~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgGekqrv~lA~al~~~p~lllLDEP 422 (501)
T PRK10762 343 LGMSVKENMSLTALRYFSRAGGSLKHADEQQAVSDFIRLFNIKTPSMEQAIGLLSGGNQQKVAIARGLMTRPKVLILDEP 422 (501)
T ss_pred CCCcHHHHhhhhhhhhhcccccccCHHHHHHHHHHHHHhcCCCCCCccCchhhCCHHHHHHHHHHHHHhhCCCEEEEcCC
Confidence 777888877531 0 0 0 0 0111 123333455677788888999999999999999999
Q ss_pred cCCCCEEEEEEcChhHHHHHHHHHHHHHhCCCH
Q 006117 175 RPLIDLRVSVTGGVHFDLVKRVFRDIQRVGQEP 207 (660)
Q Consensus 175 r~llDlkIfVdad~dirLiRRI~RDv~eRGrs~ 207 (660)
...+|. .....+..+.++....|.+.
T Consensus 423 t~~LD~-------~~~~~l~~~l~~~~~~g~tv 448 (501)
T PRK10762 423 TRGVDV-------GAKKEIYQLINQFKAEGLSI 448 (501)
T ss_pred CCCCCH-------hHHHHHHHHHHHHHHCCCEE
Confidence 999998 34444555555554445543
No 328
>PRK11288 araG L-arabinose transporter ATP-binding protein; Provisional
Probab=99.14 E-value=4.2e-11 Score=134.71 Aligned_cols=147 Identities=14% Similarity=0.104 Sum_probs=108.5
Q ss_pred EEEEecceeeccCCcceEEEEECCCCCcHHHHHHHHHHhC-CCceEEEecCcccc--------cccccccCCCCC---CC
Q 006117 51 IVIRACQLLAQKNHGIILVGVAGPSGAGKTVFTEKVLNFM-PSIAVITMDNYNDS--------SRIIDGNFDDPR---LT 118 (660)
Q Consensus 51 ~vL~~Isl~i~~ge~~~IIGI~GpSGSGKSTLak~L~~lL-p~~g~I~lDg~~~~--------~~~i~~vfq~p~---l~ 118 (660)
.+++++||.+++|+ ++||+||||||||||+++|++++ |..|.|.++|.... ...+++++|++. ++
T Consensus 267 ~~l~~isl~i~~Ge---~~~iiG~NGsGKSTLlk~l~G~~~p~~G~i~~~g~~~~~~~~~~~~~~~i~~~~q~~~~~~~~ 343 (501)
T PRK11288 267 GLREPISFSVRAGE---IVGLFGLVGAGRSELMKLLYGATRRTAGQVYLDGKPIDIRSPRDAIRAGIMLCPEDRKAEGII 343 (501)
T ss_pred CcccceeEEEeCCc---EEEEEcCCCCCHHHHHHHHcCCCcCCCceEEECCEECCCCCHHHHHhCCCEEcCcCHhhCCCc
Confidence 47999999999999 99999999999999999999998 78999999986432 134778999863 77
Q ss_pred chhhHHHHHHhhh--c----C---------cc-------ccc--ccccccccccccceeeecCCccEEEEecceeecccc
Q 006117 119 DYDTLLENIRGLK--E----G---------KA-------VQV--PIYDFKSSSRIGYRTLEVPSSRIVIIEGIYALSEKL 174 (660)
Q Consensus 119 d~~tl~e~L~~L~--~----G---------k~-------I~~--PiyD~s~~~rs~~~~~~v~~a~VVIVEGilaL~deL 174 (660)
+..++.+++.... . + .. ... ...+...+..++++.+++..+.+++.++.+++.|||
T Consensus 344 ~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgGq~qrl~la~al~~~p~lllLDEP 423 (501)
T PRK11288 344 PVHSVADNINISARRHHLRAGCLINNRWEAENADRFIRSLNIKTPSREQLIMNLSGGNQQKAILGRWLSEDMKVILLDEP 423 (501)
T ss_pred CCCCHHHHhccccchhhcccccccChHHHHHHHHHHHHhcCcccCCccCccccCCHHHHHHHHHHHHHccCCCEEEEcCC
Confidence 7788888864310 0 0 00 111 112333455677788888899999999999999999
Q ss_pred cCCCCEEEEEEcChhHHHHHHHHHHHHHhCCCH
Q 006117 175 RPLIDLRVSVTGGVHFDLVKRVFRDIQRVGQEP 207 (660)
Q Consensus 175 r~llDlkIfVdad~dirLiRRI~RDv~eRGrs~ 207 (660)
...+|. ...+.+..+.++..+.|.+.
T Consensus 424 t~~LD~-------~~~~~l~~~l~~l~~~g~tv 449 (501)
T PRK11288 424 TRGIDV-------GAKHEIYNVIYELAAQGVAV 449 (501)
T ss_pred CCCCCH-------hHHHHHHHHHHHHHhCCCEE
Confidence 999998 34445555555555555543
No 329
>COG4988 CydD ABC-type transport system involved in cytochrome bd biosynthesis, ATPase and permease components [Energy production and conversion / Posttranslational modification, protein turnover, chaperones]
Probab=99.14 E-value=3.6e-11 Score=134.90 Aligned_cols=136 Identities=21% Similarity=0.249 Sum_probs=106.5
Q ss_pred ceeeeecCce-EEEEecceeeccCCcceEEEEECCCCCcHHHHHHHHHHhC-CCceEEEecCccccc-------cccccc
Q 006117 41 DTLSFEKGFF-IVIRACQLLAQKNHGIILVGVAGPSGAGKTVFTEKVLNFM-PSIAVITMDNYNDSS-------RIIDGN 111 (660)
Q Consensus 41 ~~ls~~~g~~-~vL~~Isl~i~~ge~~~IIGI~GpSGSGKSTLak~L~~lL-p~~g~I~lDg~~~~~-------~~i~~v 111 (660)
+++++.++.- .++++++|.+++|+ .++|+|+||||||||++.|++++ |..|.|.++|..... +.+.++
T Consensus 324 ~~l~~~y~~g~~~l~~l~~t~~~g~---~talvG~SGaGKSTLl~lL~G~~~~~~G~I~vng~~l~~l~~~~~~k~i~~v 400 (559)
T COG4988 324 ENLSFRYPDGKPALSDLNLTIKAGQ---LTALVGASGAGKSTLLNLLLGFLAPTQGEIRVNGIDLRDLSPEAWRKQISWV 400 (559)
T ss_pred cceEEecCCCCcccCCceeEecCCc---EEEEECCCCCCHHHHHHHHhCcCCCCCceEEECCccccccCHHHHHhHeeee
Confidence 4555555433 89999999999999 99999999999999999999999 699999999975443 458899
Q ss_pred CCCCCCCchhhHHHHHHhhhcC----------------cccccc-cccccccc----cccceeeecCCccEEEEecceee
Q 006117 112 FDDPRLTDYDTLLENIRGLKEG----------------KAVQVP-IYDFKSSS----RIGYRTLEVPSSRIVIIEGIYAL 170 (660)
Q Consensus 112 fq~p~l~d~~tl~e~L~~L~~G----------------k~I~~P-iyD~s~~~----rs~~~~~~v~~a~VVIVEGilaL 170 (660)
.|+|.+|+ .++++|+...... +.+..| -+|...++ .++++.+++..++.++-.+.+++
T Consensus 401 ~Q~p~lf~-gTireNi~l~~~~~s~e~i~~al~~a~l~~~v~~p~GLdt~ige~G~~LSgGQ~QRlaLARAll~~~~l~l 479 (559)
T COG4988 401 SQNPYLFA-GTIRENILLARPDASDEEIIAALDQAGLLEFVPKPDGLDTVIGEGGAGLSGGQAQRLALARALLSPASLLL 479 (559)
T ss_pred CCCCcccc-ccHHHHhhccCCcCCHHHHHHHHHHhcHHHhhcCCCcccchhccCCCCCCHHHHHHHHHHHHhcCCCCEEE
Confidence 99999887 6888888533221 112222 34444443 46678889999999999999999
Q ss_pred cccccCCCCE
Q 006117 171 SEKLRPLIDL 180 (660)
Q Consensus 171 ~deLr~llDl 180 (660)
.||+...+|.
T Consensus 480 lDEpTA~LD~ 489 (559)
T COG4988 480 LDEPTAHLDA 489 (559)
T ss_pred ecCCccCCCH
Confidence 9999999997
No 330
>PTZ00265 multidrug resistance protein (mdr1); Provisional
Probab=99.14 E-value=2.1e-11 Score=152.28 Aligned_cols=164 Identities=18% Similarity=0.261 Sum_probs=120.1
Q ss_pred cceeeeecC---ceEEEEecceeeccCCcceEEEEECCCCCcHHHHHHHHHHhC-C------------------------
Q 006117 40 EDTLSFEKG---FFIVIRACQLLAQKNHGIILVGVAGPSGAGKTVFTEKVLNFM-P------------------------ 91 (660)
Q Consensus 40 ~~~ls~~~g---~~~vL~~Isl~i~~ge~~~IIGI~GpSGSGKSTLak~L~~lL-p------------------------ 91 (660)
-++++|.|. ...+|+++||.+++|+ .+||+|+|||||||+++.|.+++ |
T Consensus 1168 f~nVsF~Y~~~~~~~vL~~lsl~i~~G~---~vAIVG~SGsGKSTl~~LL~r~ydp~~~~~~~~~~~~~~~~~~~~~~~~ 1244 (1466)
T PTZ00265 1168 IMDVNFRYISRPNVPIYKDLTFSCDSKK---TTAIVGETGSGKSTVMSLLMRFYDLKNDHHIVFKNEHTNDMTNEQDYQG 1244 (1466)
T ss_pred EEEEEEECCCCCCCccccCeeEEEcCCC---EEEEECCCCCCHHHHHHHHHHhCCCcccccccccccccccccccccccc
Confidence 355666663 3479999999999999 99999999999999999999998 6
Q ss_pred ------------------------------CceEEEecCcccc-------cccccccCCCCCCCchhhHHHHHHhhhcC-
Q 006117 92 ------------------------------SIAVITMDNYNDS-------SRIIDGNFDDPRLTDYDTLLENIRGLKEG- 133 (660)
Q Consensus 92 ------------------------------~~g~I~lDg~~~~-------~~~i~~vfq~p~l~d~~tl~e~L~~L~~G- 133 (660)
..|.|.+||.+.. ++.+++++|+|.+|+ .+++|||......
T Consensus 1245 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~I~idG~di~~~~~~~lR~~i~~V~Qep~LF~-gTIreNI~~g~~~a 1323 (1466)
T PTZ00265 1245 DEEQNVGMKNVNEFSLTKEGGSGEDSTVFKNSGKILLDGVDICDYNLKDLRNLFSIVSQEPMLFN-MSIYENIKFGKEDA 1323 (1466)
T ss_pred ccccccccccccccccccccccccccccCCCCCeEEECCEEHHhCCHHHHHhhccEeCCCCcccc-ccHHHHHhcCCCCC
Confidence 4899999997543 246899999999996 7999998754321
Q ss_pred --cc-------------c-ccc-ccccccc----ccccceeeecCCccEEEEecceeecccccCCCCEEEEEEcChhHHH
Q 006117 134 --KA-------------V-QVP-IYDFKSS----SRIGYRTLEVPSSRIVIIEGIYALSEKLRPLIDLRVSVTGGVHFDL 192 (660)
Q Consensus 134 --k~-------------I-~~P-iyD~s~~----~rs~~~~~~v~~a~VVIVEGilaL~deLr~llDlkIfVdad~dirL 192 (660)
+. + ..| -||-..+ ..++++.+++..++.++-++.+++.||....+|. ...+.
T Consensus 1324 t~eeI~~A~k~A~l~~fI~~LP~GydT~VGe~G~~LSGGQkQRIaIARALlr~p~ILLLDEaTSaLD~-------~sE~~ 1396 (1466)
T PTZ00265 1324 TREDVKRACKFAAIDEFIESLPNKYDTNVGPYGKSLSGGQKQRIAIARALLREPKILLLDEATSSLDS-------NSEKL 1396 (1466)
T ss_pred CHHHHHHHHHHcCCHHHHHhCccccCCccCCCCCcCCHHHHHHHHHHHHHhcCCCEEEEeCcccccCH-------HHHHH
Confidence 00 1 122 2443333 2466889999999999999999999999999986 23333
Q ss_pred HHHHHHHHH-HhCCCHHHHHHHH
Q 006117 193 VKRVFRDIQ-RVGQEPEEIIHQI 214 (660)
Q Consensus 193 iRRI~RDv~-eRGrs~E~Vl~qy 214 (660)
+....+... .+|+|.--|.|+.
T Consensus 1397 I~~~L~~~~~~~~~TvIiIaHRl 1419 (1466)
T PTZ00265 1397 IEKTIVDIKDKADKTIITIAHRI 1419 (1466)
T ss_pred HHHHHHHHhccCCCEEEEEechH
Confidence 433334333 2466665555554
No 331
>PRK10789 putative multidrug transporter membrane\ATP-binding components; Provisional
Probab=99.14 E-value=2.5e-11 Score=138.59 Aligned_cols=128 Identities=16% Similarity=0.232 Sum_probs=99.7
Q ss_pred ceEEEEecceeeccCCcceEEEEECCCCCcHHHHHHHHHHhC-CCceEEEecCcccc-------cccccccCCCCCCCch
Q 006117 49 FFIVIRACQLLAQKNHGIILVGVAGPSGAGKTVFTEKVLNFM-PSIAVITMDNYNDS-------SRIIDGNFDDPRLTDY 120 (660)
Q Consensus 49 ~~~vL~~Isl~i~~ge~~~IIGI~GpSGSGKSTLak~L~~lL-p~~g~I~lDg~~~~-------~~~i~~vfq~p~l~d~ 120 (660)
...++++++|.+++|+ .++|+|+||||||||++.|++++ |..|.|.+||.... .+.+++++|+|.+|+
T Consensus 327 ~~~~l~~i~~~i~~G~---~~~ivG~sGsGKSTLl~ll~g~~~p~~G~i~~~g~~~~~~~~~~~~~~i~~v~q~~~lf~- 402 (569)
T PRK10789 327 DHPALENVNFTLKPGQ---MLGICGPTGSGKSTLLSLIQRHFDVSEGDIRFHDIPLTKLQLDSWRSRLAVVSQTPFLFS- 402 (569)
T ss_pred CCccccCeeEEECCCC---EEEEECCCCCCHHHHHHHHhcccCCCCCEEEECCEEHhhCCHHHHHhheEEEccCCeecc-
Confidence 3569999999999999 99999999999999999999998 89999999997532 145789999999987
Q ss_pred hhHHHHHHhhhcC-c--c-------------c-ccc-cccccc----cccccceeeecCCccEEEEecceeecccccCCC
Q 006117 121 DTLLENIRGLKEG-K--A-------------V-QVP-IYDFKS----SSRIGYRTLEVPSSRIVIIEGIYALSEKLRPLI 178 (660)
Q Consensus 121 ~tl~e~L~~L~~G-k--~-------------I-~~P-iyD~s~----~~rs~~~~~~v~~a~VVIVEGilaL~deLr~ll 178 (660)
.++++|+...... . . + ..| -++... ...++++.+++..++.++-++.+++.||+...+
T Consensus 403 ~ti~~Ni~~~~~~~~~~~~~~~~~~~~l~~~i~~lp~gl~t~~~~~g~~LSgGq~qRi~lARall~~~~illlDEpts~L 482 (569)
T PRK10789 403 DTVANNIALGRPDATQQEIEHVARLASVHDDILRLPQGYDTEVGERGVMLSGGQKQRISIARALLLNAEILILDDALSAV 482 (569)
T ss_pred ccHHHHHhcCCCCCCHHHHHHHHHHcCCHHHHHhCcCcccceecCCCCcCCHHHHHHHHHHHHHhcCCCEEEEECccccC
Confidence 5899998643211 0 0 0 112 122111 234567888888999999999999999999999
Q ss_pred CE
Q 006117 179 DL 180 (660)
Q Consensus 179 Dl 180 (660)
|.
T Consensus 483 D~ 484 (569)
T PRK10789 483 DG 484 (569)
T ss_pred CH
Confidence 97
No 332
>PRK10790 putative multidrug transporter membrane\ATP-binding components; Provisional
Probab=99.14 E-value=3.7e-11 Score=137.54 Aligned_cols=136 Identities=17% Similarity=0.192 Sum_probs=104.4
Q ss_pred ceeeeecC-ceEEEEecceeeccCCcceEEEEECCCCCcHHHHHHHHHHhC-CCceEEEecCcccc-------ccccccc
Q 006117 41 DTLSFEKG-FFIVIRACQLLAQKNHGIILVGVAGPSGAGKTVFTEKVLNFM-PSIAVITMDNYNDS-------SRIIDGN 111 (660)
Q Consensus 41 ~~ls~~~g-~~~vL~~Isl~i~~ge~~~IIGI~GpSGSGKSTLak~L~~lL-p~~g~I~lDg~~~~-------~~~i~~v 111 (660)
++++|.++ ...++++++|.+++|+ .+||+|+||||||||++.|++++ |..|.|.+||.+.. .+.++++
T Consensus 344 ~~v~f~y~~~~~il~~i~l~i~~Ge---~iaIvG~SGsGKSTLl~lL~gl~~p~~G~I~idg~~i~~~~~~~l~~~i~~v 420 (592)
T PRK10790 344 DNVSFAYRDDNLVLQNINLSVPSRG---FVALVGHTGSGKSTLASLLMGYYPLTEGEIRLDGRPLSSLSHSVLRQGVAMV 420 (592)
T ss_pred EEEEEEeCCCCceeeceeEEEcCCC---EEEEECCCCCCHHHHHHHHhcccCCCCceEEECCEEhhhCCHHHHHhheEEE
Confidence 44455443 2469999999999999 99999999999999999999998 88999999997543 2568999
Q ss_pred CCCCCCCchhhHHHHHHhhhcC---------------cccc-cc-cccccc----cccccceeeecCCccEEEEecceee
Q 006117 112 FDDPRLTDYDTLLENIRGLKEG---------------KAVQ-VP-IYDFKS----SSRIGYRTLEVPSSRIVIIEGIYAL 170 (660)
Q Consensus 112 fq~p~l~d~~tl~e~L~~L~~G---------------k~I~-~P-iyD~s~----~~rs~~~~~~v~~a~VVIVEGilaL 170 (660)
+|+|.+|+ .++++|+.....- +.+. .| -||-.. ...++++.+++..++.++-++..++
T Consensus 421 ~Q~~~lF~-~Ti~~NI~~~~~~~d~~i~~a~~~~gl~~~i~~lp~Gldt~i~e~g~~LSGGqrQRialARaLl~~~~ill 499 (592)
T PRK10790 421 QQDPVVLA-DTFLANVTLGRDISEEQVWQALETVQLAELARSLPDGLYTPLGEQGNNLSVGQKQLLALARVLVQTPQILI 499 (592)
T ss_pred ccCCcccc-chHHHHHHhCCCCCHHHHHHHHHHcCcHHHHHhccccccccccCCCCCCCHHHHHHHHHHHHHHhCCCEEE
Confidence 99999998 4899888643210 0011 12 123222 2345678888888999999999999
Q ss_pred cccccCCCCE
Q 006117 171 SEKLRPLIDL 180 (660)
Q Consensus 171 ~deLr~llDl 180 (660)
.||+...+|.
T Consensus 500 lDEpts~LD~ 509 (592)
T PRK10790 500 LDEATANIDS 509 (592)
T ss_pred EeCCcccCCH
Confidence 9999999986
No 333
>cd03221 ABCF_EF-3 ABCF_EF-3 Elongation factor 3 (EF-3) is a cytosolic protein required by fungal ribosomes for in vitro protein synthesis and for in vivo growth. EF-3 stimulates the binding of the EF-1: GTP: aa-tRNA ternary complex to the ribosomal A site by facilitated release of the deacylated tRNA from the E site. The reaction requires ATP hydrolysis. EF-3 contains two ATP nucleotide binding sequence (NBS) motifs. NBSI is sufficient for the intrinsic ATPase activity. NBSII is essential for the ribosome-stimulated functions.
Probab=99.13 E-value=5.9e-11 Score=112.51 Aligned_cols=98 Identities=17% Similarity=0.236 Sum_probs=78.0
Q ss_pred eeeeecCceEEEEecceeeccCCcceEEEEECCCCCcHHHHHHHHHHhC-CCceEEEecCcccccccccccCCCCCCCch
Q 006117 42 TLSFEKGFFIVIRACQLLAQKNHGIILVGVAGPSGAGKTVFTEKVLNFM-PSIAVITMDNYNDSSRIIDGNFDDPRLTDY 120 (660)
Q Consensus 42 ~ls~~~g~~~vL~~Isl~i~~ge~~~IIGI~GpSGSGKSTLak~L~~lL-p~~g~I~lDg~~~~~~~i~~vfq~p~l~d~ 120 (660)
++++.++...++++++|.+++|+ +++|+|+||||||||+++|++++ |..|.|.+++. ..+++++|
T Consensus 5 ~l~~~~~~~~~l~~~~~~~~~Ge---~~~i~G~nGsGKStLl~~l~G~~~~~~G~i~~~~~----~~i~~~~~------- 70 (144)
T cd03221 5 NLSKTYGGKLLLKDISLTINPGD---RIGLVGRNGAGKSTLLKLIAGELEPDEGIVTWGST----VKIGYFEQ------- 70 (144)
T ss_pred EEEEEECCceEEEeeEEEECCCC---EEEEECCCCCCHHHHHHHHcCCCCCCceEEEECCe----EEEEEEcc-------
Confidence 44455555579999999999999 99999999999999999999998 78999999884 24556655
Q ss_pred hhHHHHHHhhhcCcccccccccccccccccceeeecCCccEEEEecceeecccccCCCCE
Q 006117 121 DTLLENIRGLKEGKAVQVPIYDFKSSSRIGYRTLEVPSSRIVIIEGIYALSEKLRPLIDL 180 (660)
Q Consensus 121 ~tl~e~L~~L~~Gk~I~~PiyD~s~~~rs~~~~~~v~~a~VVIVEGilaL~deLr~llDl 180 (660)
.++++..++..++.++-++.+++.||+...+|.
T Consensus 71 ---------------------------lS~G~~~rv~laral~~~p~illlDEP~~~LD~ 103 (144)
T cd03221 71 ---------------------------LSGGEKMRLALAKLLLENPNLLLLDEPTNHLDL 103 (144)
T ss_pred ---------------------------CCHHHHHHHHHHHHHhcCCCEEEEeCCccCCCH
Confidence 223344556666777778888888999999986
No 334
>PRK15439 autoinducer 2 ABC transporter ATP-binding protein LsrA; Provisional
Probab=99.13 E-value=5.9e-11 Score=133.95 Aligned_cols=145 Identities=16% Similarity=0.135 Sum_probs=104.9
Q ss_pred EEEecceeeccCCcceEEEEECCCCCcHHHHHHHHHHhC-CCceEEEecCccccc--------ccccccCCCC---CCCc
Q 006117 52 VIRACQLLAQKNHGIILVGVAGPSGAGKTVFTEKVLNFM-PSIAVITMDNYNDSS--------RIIDGNFDDP---RLTD 119 (660)
Q Consensus 52 vL~~Isl~i~~ge~~~IIGI~GpSGSGKSTLak~L~~lL-p~~g~I~lDg~~~~~--------~~i~~vfq~p---~l~d 119 (660)
++++++|.+++|+ ++||+|+||||||||+++|++++ |..|.|.+++..... ..++|++|++ .+++
T Consensus 278 ~l~~isl~i~~Ge---~~~l~G~NGsGKSTLl~~i~Gl~~p~~G~i~~~g~~i~~~~~~~~~~~~i~~v~q~~~~~~l~~ 354 (510)
T PRK15439 278 GFRNISLEVRAGE---ILGLAGVVGAGRTELAETLYGLRPARGGRIMLNGKEINALSTAQRLARGLVYLPEDRQSSGLYL 354 (510)
T ss_pred CccceeEEEcCCc---EEEEECCCCCCHHHHHHHHcCCCCCCCcEEEECCEECCCCCHHHHHhCCcEECCCChhhCCccC
Confidence 5899999999999 99999999999999999999998 789999999864321 3478889874 4666
Q ss_pred hhhHHHHHHhh-----h---cCc-----------cccc--ccccccccccccceeeecCCccEEEEecceeecccccCCC
Q 006117 120 YDTLLENIRGL-----K---EGK-----------AVQV--PIYDFKSSSRIGYRTLEVPSSRIVIIEGIYALSEKLRPLI 178 (660)
Q Consensus 120 ~~tl~e~L~~L-----~---~Gk-----------~I~~--PiyD~s~~~rs~~~~~~v~~a~VVIVEGilaL~deLr~ll 178 (660)
..++.+++... . ... .... ...+...+..++++.+++..+..++.++.+++.|||...+
T Consensus 355 ~~t~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgG~kqrl~la~al~~~p~lLlLDEPt~gL 434 (510)
T PRK15439 355 DAPLAWNVCALTHNRRGFWIKPARENAVLERYRRALNIKFNHAEQAARTLSGGNQQKVLIAKCLEASPQLLIVDEPTRGV 434 (510)
T ss_pred CCcHHHHHHhhhhhhhccccChHHHHHHHHHHHHHcCCCCCCccCccccCCcHHHHHHHHHHHHhhCCCEEEECCCCcCc
Confidence 66777776321 0 000 0111 1223334556777888888899999999999999999999
Q ss_pred CEEEEEEcChhHHHHHHHHHHHHHhCCC
Q 006117 179 DLRVSVTGGVHFDLVKRVFRDIQRVGQE 206 (660)
Q Consensus 179 DlkIfVdad~dirLiRRI~RDv~eRGrs 206 (660)
|. ...+.+..+.++..+.|.+
T Consensus 435 D~-------~~~~~l~~~l~~l~~~g~t 455 (510)
T PRK15439 435 DV-------SARNDIYQLIRSIAAQNVA 455 (510)
T ss_pred Ch-------hHHHHHHHHHHHHHhCCCE
Confidence 98 3344445555555444544
No 335
>TIGR01193 bacteriocin_ABC ABC-type bacteriocin transporter. This model describes ABC-type bacteriocin transporter. The amino terminal domain (pfam03412) processes the N-terminal leader peptide from the bacteriocin while C-terminal domains resemble ABC transporter membrane protein and ATP-binding cassette domain. In general, bacteriocins are agents which are responsible for killing or inhibiting the closely related species or even different strains of the same species. Bacteriocins are usually encoded by bacterial plasmids. Bacteriocins are named after the species and hence in literature one encounters various names e.g., leucocin from Leuconostic geldium; pedicocin from Pedicoccus acidilactici; sakacin from Lactobacillus sake etc.
Probab=99.13 E-value=3.3e-11 Score=140.93 Aligned_cols=136 Identities=18% Similarity=0.281 Sum_probs=106.1
Q ss_pred ceeeeecC-ceEEEEecceeeccCCcceEEEEECCCCCcHHHHHHHHHHhC-CCceEEEecCcccc-------ccccccc
Q 006117 41 DTLSFEKG-FFIVIRACQLLAQKNHGIILVGVAGPSGAGKTVFTEKVLNFM-PSIAVITMDNYNDS-------SRIIDGN 111 (660)
Q Consensus 41 ~~ls~~~g-~~~vL~~Isl~i~~ge~~~IIGI~GpSGSGKSTLak~L~~lL-p~~g~I~lDg~~~~-------~~~i~~v 111 (660)
++++|.++ ...+|++++|.+++|+ .|||+|+||||||||++.|++++ |..|.|.+||.+.. .+.++++
T Consensus 477 ~~vsf~y~~~~~iL~~isl~i~~G~---~vaIvG~SGsGKSTLlklL~gl~~p~~G~I~idg~~i~~~~~~~lr~~i~~v 553 (708)
T TIGR01193 477 NDVSYSYGYGSNILSDISLTIKMNS---KTTIVGMSGSGKSTLAKLLVGFFQARSGEILLNGFSLKDIDRHTLRQFINYL 553 (708)
T ss_pred EEEEEEcCCCCcceeceeEEECCCC---EEEEECCCCCCHHHHHHHHhccCCCCCcEEEECCEEHHHcCHHHHHHheEEE
Confidence 45566654 3579999999999999 99999999999999999999998 89999999997532 2468999
Q ss_pred CCCCCCCchhhHHHHHHhhh-cC---cc-------------c-ccc-ccccccc----ccccceeeecCCccEEEEecce
Q 006117 112 FDDPRLTDYDTLLENIRGLK-EG---KA-------------V-QVP-IYDFKSS----SRIGYRTLEVPSSRIVIIEGIY 168 (660)
Q Consensus 112 fq~p~l~d~~tl~e~L~~L~-~G---k~-------------I-~~P-iyD~s~~----~rs~~~~~~v~~a~VVIVEGil 168 (660)
+|++.+|+ .++++|+.... .. +. + ..| .||-..+ ..++++.+++..++.++-++.+
T Consensus 554 ~Q~~~lf~-gTI~eNi~l~~~~~~~~~~i~~a~~~a~l~~~i~~lp~gldt~i~e~G~~LSgGQrQRialARall~~p~i 632 (708)
T TIGR01193 554 PQEPYIFS-GSILENLLLGAKENVSQDEIWAACEIAEIKDDIENMPLGYQTELSEEGSSISGGQKQRIALARALLTDSKV 632 (708)
T ss_pred ecCceehh-HHHHHHHhccCCCCCCHHHHHHHHHHhCCHHHHHhcccccCcEecCCCCCCCHHHHHHHHHHHHHhhCCCE
Confidence 99999987 49999987541 11 00 1 112 1333222 2466788889999999999999
Q ss_pred eecccccCCCCE
Q 006117 169 ALSEKLRPLIDL 180 (660)
Q Consensus 169 aL~deLr~llDl 180 (660)
++.||+...+|.
T Consensus 633 liLDE~Ts~LD~ 644 (708)
T TIGR01193 633 LILDESTSNLDT 644 (708)
T ss_pred EEEeCccccCCH
Confidence 999999999986
No 336
>PRK11176 lipid transporter ATP-binding/permease protein; Provisional
Probab=99.12 E-value=3.7e-11 Score=137.13 Aligned_cols=137 Identities=15% Similarity=0.163 Sum_probs=105.1
Q ss_pred cceeeeecC--ceEEEEecceeeccCCcceEEEEECCCCCcHHHHHHHHHHhC-CCceEEEecCcccc-------ccccc
Q 006117 40 EDTLSFEKG--FFIVIRACQLLAQKNHGIILVGVAGPSGAGKTVFTEKVLNFM-PSIAVITMDNYNDS-------SRIID 109 (660)
Q Consensus 40 ~~~ls~~~g--~~~vL~~Isl~i~~ge~~~IIGI~GpSGSGKSTLak~L~~lL-p~~g~I~lDg~~~~-------~~~i~ 109 (660)
.++++|.+. ...+++++++.+++|+ .++|+|+||||||||++.|++++ |..|.|.+||.+.. .+.++
T Consensus 344 ~~~vsf~y~~~~~~il~~i~l~i~~G~---~~aIvG~sGsGKSTLl~ll~gl~~p~~G~I~i~g~~i~~~~~~~~~~~i~ 420 (582)
T PRK11176 344 FRNVTFTYPGKEVPALRNINFKIPAGK---TVALVGRSGSGKSTIANLLTRFYDIDEGEILLDGHDLRDYTLASLRNQVA 420 (582)
T ss_pred EEEEEEecCCCCCccccCceEEeCCCC---EEEEECCCCCCHHHHHHHHHhccCCCCceEEECCEEhhhcCHHHHHhhce
Confidence 345556553 3579999999999999 99999999999999999999998 88999999997533 24588
Q ss_pred ccCCCCCCCchhhHHHHHHhhhcC----cc-------------c-ccc-cccccc----cccccceeeecCCccEEEEec
Q 006117 110 GNFDDPRLTDYDTLLENIRGLKEG----KA-------------V-QVP-IYDFKS----SSRIGYRTLEVPSSRIVIIEG 166 (660)
Q Consensus 110 ~vfq~p~l~d~~tl~e~L~~L~~G----k~-------------I-~~P-iyD~s~----~~rs~~~~~~v~~a~VVIVEG 166 (660)
+++|++.+|+ .++++|+...... +. + ..| -+|-.. ...++++.+++..++.++-++
T Consensus 421 ~v~Q~~~lf~-~Ti~~Ni~~~~~~~~~~~~i~~al~~~~l~~~i~~lp~Gldt~ig~~g~~LSGGqrQRi~LARall~~~ 499 (582)
T PRK11176 421 LVSQNVHLFN-DTIANNIAYARTEQYSREQIEEAARMAYAMDFINKMDNGLDTVIGENGVLLSGGQRQRIAIARALLRDS 499 (582)
T ss_pred EEccCceeec-chHHHHHhcCCCCCCCHHHHHHHHHHhCcHHHHHhcccccCceeCCCCCcCCHHHHHHHHHHHHHHhCC
Confidence 9999999987 6899998743211 00 1 011 122222 224667888888899999999
Q ss_pred ceeecccccCCCCE
Q 006117 167 IYALSEKLRPLIDL 180 (660)
Q Consensus 167 ilaL~deLr~llDl 180 (660)
..++.||+...+|.
T Consensus 500 ~ililDEptsaLD~ 513 (582)
T PRK11176 500 PILILDEATSALDT 513 (582)
T ss_pred CEEEEECccccCCH
Confidence 99999999999986
No 337
>TIGR03719 ABC_ABC_ChvD ATP-binding cassette protein, ChvD family. Members of this protein family have two copies of the ABC transporter ATP-binding cassette, but are found outside the common ABC transporter operon structure that features integral membrane permease proteins and substrate-binding proteins encoded next to the ATP-binding cassette (ABC domain) protein. The member protein ChvD from Agrobacterium tumefaciens was identified as both a candidate to interact with VirB8, based on yeast two-hybrid analysis, and as an apparent regulator of VirG. The general function of this protein family is unknown.
Probab=99.12 E-value=7.3e-11 Score=134.46 Aligned_cols=136 Identities=19% Similarity=0.159 Sum_probs=104.2
Q ss_pred eccceeeeecCceEEEEecceeeccCCcceEEEEECCCCCcHHHHHHHHHHhC-CCceEEEecCcccccccccccCCCC-
Q 006117 38 PIEDTLSFEKGFFIVIRACQLLAQKNHGIILVGVAGPSGAGKTVFTEKVLNFM-PSIAVITMDNYNDSSRIIDGNFDDP- 115 (660)
Q Consensus 38 ~~~~~ls~~~g~~~vL~~Isl~i~~ge~~~IIGI~GpSGSGKSTLak~L~~lL-p~~g~I~lDg~~~~~~~i~~vfq~p- 115 (660)
...+++++.++...++++++|.+++|+ ++||+|+||||||||+++|++.+ |..|.|.+++. ..+++++|++
T Consensus 323 l~~~~l~~~~~~~~~l~~isl~i~~Ge---~~~l~G~NGsGKSTLl~~l~G~~~p~~G~i~~~~~----~~i~~v~q~~~ 395 (552)
T TIGR03719 323 IEAENLSKGFGDKLLIDDLSFKLPPGG---IVGVIGPNGAGKSTLFRMITGQEQPDSGTIKIGET----VKLAYVDQSRD 395 (552)
T ss_pred EEEeeEEEEECCeeeeccceEEEcCCC---EEEEECCCCCCHHHHHHHHcCCCCCCCeEEEECCc----eEEEEEeCCcc
Confidence 334566666666789999999999999 99999999999999999999998 78999988542 2478899986
Q ss_pred CCCchhhHHHHHHhhhc--C----c--------ccccc--cccccccccccceeeecCCccEEEEecceeecccccCCCC
Q 006117 116 RLTDYDTLLENIRGLKE--G----K--------AVQVP--IYDFKSSSRIGYRTLEVPSSRIVIIEGIYALSEKLRPLID 179 (660)
Q Consensus 116 ~l~d~~tl~e~L~~L~~--G----k--------~I~~P--iyD~s~~~rs~~~~~~v~~a~VVIVEGilaL~deLr~llD 179 (660)
.+++..++.+++..... + . .+... ..+...+..++++..++..+..++.++.+++.|||...+|
T Consensus 396 ~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgGe~qrv~la~al~~~p~lllLDEPt~~LD 475 (552)
T TIGR03719 396 ALDPNKTVWEEISGGLDIIQLGKREVPSRAYVGRFNFKGSDQQKKVGQLSGGERNRVHLAKTLKSGGNVLLLDEPTNDLD 475 (552)
T ss_pred ccCCCCcHHHHHHhhccccccCcchHHHHHHHHhCCCChhHhcCchhhCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCC
Confidence 46777788888764211 0 0 01111 1233344566778888888999999999999999999999
Q ss_pred E
Q 006117 180 L 180 (660)
Q Consensus 180 l 180 (660)
.
T Consensus 476 ~ 476 (552)
T TIGR03719 476 V 476 (552)
T ss_pred H
Confidence 7
No 338
>PRK11819 putative ABC transporter ATP-binding protein; Reviewed
Probab=99.12 E-value=8.5e-11 Score=134.07 Aligned_cols=136 Identities=18% Similarity=0.160 Sum_probs=104.2
Q ss_pred eccceeeeecCceEEEEecceeeccCCcceEEEEECCCCCcHHHHHHHHHHhC-CCceEEEecCcccccccccccCCCC-
Q 006117 38 PIEDTLSFEKGFFIVIRACQLLAQKNHGIILVGVAGPSGAGKTVFTEKVLNFM-PSIAVITMDNYNDSSRIIDGNFDDP- 115 (660)
Q Consensus 38 ~~~~~ls~~~g~~~vL~~Isl~i~~ge~~~IIGI~GpSGSGKSTLak~L~~lL-p~~g~I~lDg~~~~~~~i~~vfq~p- 115 (660)
...+++++.++...++++++|.+.+|+ ++||+|+||||||||+++|++.+ |+.|.|.+++. ..+++++|++
T Consensus 325 l~~~~l~~~~~~~~~l~~isl~i~~Ge---~~~l~G~NGsGKSTLl~~i~G~~~p~~G~i~~~~~----~~i~~v~q~~~ 397 (556)
T PRK11819 325 IEAENLSKSFGDRLLIDDLSFSLPPGG---IVGIIGPNGAGKSTLFKMITGQEQPDSGTIKIGET----VKLAYVDQSRD 397 (556)
T ss_pred EEEEeEEEEECCeeeecceeEEEcCCC---EEEEECCCCCCHHHHHHHHhCCCCCCCeEEEECCc----eEEEEEeCchh
Confidence 334556666666789999999999999 99999999999999999999998 78999988532 2478999986
Q ss_pred CCCchhhHHHHHHhhhc--C---c---------ccccc--cccccccccccceeeecCCccEEEEecceeecccccCCCC
Q 006117 116 RLTDYDTLLENIRGLKE--G---K---------AVQVP--IYDFKSSSRIGYRTLEVPSSRIVIIEGIYALSEKLRPLID 179 (660)
Q Consensus 116 ~l~d~~tl~e~L~~L~~--G---k---------~I~~P--iyD~s~~~rs~~~~~~v~~a~VVIVEGilaL~deLr~llD 179 (660)
.+++..++.+++..... + . .+..+ ..+...+..++++..++..+..++.++.+++.||+...+|
T Consensus 398 ~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgG~~qrv~la~al~~~p~lllLDEPt~~LD 477 (556)
T PRK11819 398 ALDPNKTVWEEISGGLDIIKVGNREIPSRAYVGRFNFKGGDQQKKVGVLSGGERNRLHLAKTLKQGGNVLLLDEPTNDLD 477 (556)
T ss_pred hcCCCCCHHHHHHhhcccccccccHHHHHHHHHhCCCChhHhcCchhhCCHHHHHHHHHHHHHhcCCCEEEEcCCCCCCC
Confidence 56677788888754211 0 0 01111 1233445567778888888899999999999999999999
Q ss_pred E
Q 006117 180 L 180 (660)
Q Consensus 180 l 180 (660)
.
T Consensus 478 ~ 478 (556)
T PRK11819 478 V 478 (556)
T ss_pred H
Confidence 7
No 339
>PRK10535 macrolide transporter ATP-binding /permease protein; Provisional
Probab=99.12 E-value=1.1e-10 Score=135.52 Aligned_cols=149 Identities=15% Similarity=0.180 Sum_probs=110.5
Q ss_pred ceEEEEecceeeccCCcceEEEEECCCCCcHHHHHHHHHHhC-CCceEEEecCcccc-----------cccccccCCCCC
Q 006117 49 FFIVIRACQLLAQKNHGIILVGVAGPSGAGKTVFTEKVLNFM-PSIAVITMDNYNDS-----------SRIIDGNFDDPR 116 (660)
Q Consensus 49 ~~~vL~~Isl~i~~ge~~~IIGI~GpSGSGKSTLak~L~~lL-p~~g~I~lDg~~~~-----------~~~i~~vfq~p~ 116 (660)
...++++++|.+++|+ +++|+|+||||||||+++|++++ |+.|.+.+||.... .+.++++||++.
T Consensus 20 ~~~il~~vs~~i~~Ge---~~~l~G~nGsGKSTLl~~i~Gl~~~~~G~i~~~g~~i~~~~~~~~~~~~~~~i~~v~q~~~ 96 (648)
T PRK10535 20 QVEVLKGISLDIYAGE---MVAIVGASGSGKSTLMNILGCLDKPTSGTYRVAGQDVATLDADALAQLRREHFGFIFQRYH 96 (648)
T ss_pred CeeeeeeeEEEEcCCC---EEEEECCCCCCHHHHHHHHhcCCCCCCeEEEECCEEcCcCCHHHHHHHHhccEEEEeCCcc
Confidence 3579999999999999 99999999999999999999998 78999999997532 135789999999
Q ss_pred CCchhhHHHHHHhhh--cCcc--------------ccc-ccccccccccccceeeecCCccEEEEecceeecccccCCCC
Q 006117 117 LTDYDTLLENIRGLK--EGKA--------------VQV-PIYDFKSSSRIGYRTLEVPSSRIVIIEGIYALSEKLRPLID 179 (660)
Q Consensus 117 l~d~~tl~e~L~~L~--~Gk~--------------I~~-PiyD~s~~~rs~~~~~~v~~a~VVIVEGilaL~deLr~llD 179 (660)
+++..++.+++.... .+.. ... ...+...+..++++.+++..++.++-++.+++.||+...+|
T Consensus 97 l~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~l~~lgl~~~~~~~~~~LS~Gq~qrv~LAraL~~~P~lLllDEP~~gLD 176 (648)
T PRK10535 97 LLSHLTAAQNVEVPAVYAGLERKQRLLRAQELLQRLGLEDRVEYQPSQLSGGQQQRVSIARALMNGGQVILADEPTGALD 176 (648)
T ss_pred cCCCCCHHHHHHHHHHHcCCCHHHHHHHHHHHHHHCCChhhhcCCcccCCHHHHHHHHHHHHHhcCCCEEEEECCCCCCC
Confidence 998888888875321 1100 000 11233344556667777888888999999999999999999
Q ss_pred EEEEEEcChhHHHHHHHHHHHHHhCCCH
Q 006117 180 LRVSVTGGVHFDLVKRVFRDIQRVGQEP 207 (660)
Q Consensus 180 lkIfVdad~dirLiRRI~RDv~eRGrs~ 207 (660)
. ...+....+.++..+.|.+.
T Consensus 177 ~-------~s~~~l~~ll~~l~~~g~ti 197 (648)
T PRK10535 177 S-------HSGEEVMAILHQLRDRGHTV 197 (648)
T ss_pred H-------HHHHHHHHHHHHHHhcCCEE
Confidence 7 33444445555555456554
No 340
>PRK10522 multidrug transporter membrane component/ATP-binding component; Provisional
Probab=99.12 E-value=8e-11 Score=133.87 Aligned_cols=137 Identities=15% Similarity=0.122 Sum_probs=98.8
Q ss_pred cceeeeecC-ceEEEEecceeeccCCcceEEEEECCCCCcHHHHHHHHHHhC-CCceEEEecCccccc-------ccccc
Q 006117 40 EDTLSFEKG-FFIVIRACQLLAQKNHGIILVGVAGPSGAGKTVFTEKVLNFM-PSIAVITMDNYNDSS-------RIIDG 110 (660)
Q Consensus 40 ~~~ls~~~g-~~~vL~~Isl~i~~ge~~~IIGI~GpSGSGKSTLak~L~~lL-p~~g~I~lDg~~~~~-------~~i~~ 110 (660)
.++++|.++ ...++++++|.+++|+ .++|+|+||||||||++.|++.+ |..|.|.+||.+... +.+++
T Consensus 325 ~~~v~f~y~~~~~~l~~i~~~i~~G~---~~aivG~sGsGKSTL~~ll~g~~~~~~G~i~~~g~~~~~~~~~~~~~~i~~ 401 (547)
T PRK10522 325 LRNVTFAYQDNGFSVGPINLTIKRGE---LLFLIGGNGSGKSTLAMLLTGLYQPQSGEILLDGKPVTAEQPEDYRKLFSA 401 (547)
T ss_pred EEEEEEEeCCCCeEEecceEEEcCCC---EEEEECCCCCCHHHHHHHHhCCCCCCCeEEEECCEECCCCCHHHHhhheEE
Confidence 345555553 3469999999999999 99999999999999999999998 899999999975432 45788
Q ss_pred cCCCCCCCchhhHHHH------------HHhhhcCcccccccccccccccccceeeecCCccEEEEecceeecccccCCC
Q 006117 111 NFDDPRLTDYDTLLEN------------IRGLKEGKAVQVPIYDFKSSSRIGYRTLEVPSSRIVIIEGIYALSEKLRPLI 178 (660)
Q Consensus 111 vfq~p~l~d~~tl~e~------------L~~L~~Gk~I~~PiyD~s~~~rs~~~~~~v~~a~VVIVEGilaL~deLr~ll 178 (660)
++|++.+|+. ++.++ +..+.-+..+..+.-...-...++++.+++..++.++-++.+++.||+...+
T Consensus 402 v~q~~~lf~~-ti~~n~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~G~~LSgGq~qRl~lARal~~~~~ililDE~ts~L 480 (547)
T PRK10522 402 VFTDFHLFDQ-LLGPEGKPANPALVEKWLERLKMAHKLELEDGRISNLKLSKGQKKRLALLLALAEERDILLLDEWAADQ 480 (547)
T ss_pred EecChhHHHH-hhccccCchHHHHHHHHHHHcCCchhhhccccCCCCCCCCHHHHHHHHHHHHHhcCCCEEEEECCCCCC
Confidence 9999877653 23222 2221111111111000011245667888889999999999999999999999
Q ss_pred CE
Q 006117 179 DL 180 (660)
Q Consensus 179 Dl 180 (660)
|.
T Consensus 481 D~ 482 (547)
T PRK10522 481 DP 482 (547)
T ss_pred CH
Confidence 97
No 341
>PRK13546 teichoic acids export protein ATP-binding subunit; Provisional
Probab=99.11 E-value=1.3e-10 Score=120.98 Aligned_cols=144 Identities=12% Similarity=0.057 Sum_probs=95.5
Q ss_pred CceEEEEecceeeccCCcceEEEEECCCCCcHHHHHHHHHHhC-CCceEEEecCcccccccccccCCCCCCCchhhHHHH
Q 006117 48 GFFIVIRACQLLAQKNHGIILVGVAGPSGAGKTVFTEKVLNFM-PSIAVITMDNYNDSSRIIDGNFDDPRLTDYDTLLEN 126 (660)
Q Consensus 48 g~~~vL~~Isl~i~~ge~~~IIGI~GpSGSGKSTLak~L~~lL-p~~g~I~lDg~~~~~~~i~~vfq~p~l~d~~tl~e~ 126 (660)
+.+.++++++|.+++|+ ++||+|+||||||||+++|++++ |..|.|.++|.. .+.++.+.+++..++.++
T Consensus 35 ~~~~il~~is~~i~~Ge---~~~liG~NGsGKSTLlk~L~Gl~~p~~G~I~~~g~~------~~~~~~~~~~~~~tv~en 105 (264)
T PRK13546 35 KTFFALDDISLKAYEGD---VIGLVGINGSGKSTLSNIIGGSLSPTVGKVDRNGEV------SVIAISAGLSGQLTGIEN 105 (264)
T ss_pred CceEEEeeeEEEEcCCC---EEEEECCCCCCHHHHHHHHhCCcCCCceEEEECCEE------eEEecccCCCCCCcHHHH
Confidence 34579999999999999 99999999999999999999998 789999998841 122333334444455555
Q ss_pred HHhhh--cCc---c-----------cc-cccccccccccccceeeecCCccEEEEecceeecccccCCCCEEEEEEcChh
Q 006117 127 IRGLK--EGK---A-----------VQ-VPIYDFKSSSRIGYRTLEVPSSRIVIIEGIYALSEKLRPLIDLRVSVTGGVH 189 (660)
Q Consensus 127 L~~L~--~Gk---~-----------I~-~PiyD~s~~~rs~~~~~~v~~a~VVIVEGilaL~deLr~llDlkIfVdad~d 189 (660)
+.... .+. . .. .+..+......++++..++..+..++.++.+++.||+...+|. ..
T Consensus 106 l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~Gq~qrv~Laral~~~p~iLlLDEPt~gLD~-------~~ 178 (264)
T PRK13546 106 IEFKMLCMGFKRKEIKAMTPKIIEFSELGEFIYQPVKKYSSGMRAKLGFSINITVNPDILVIDEALSVGDQ-------TF 178 (264)
T ss_pred HHHHHHHcCCCHHHHHHHHHHHHHHcCCchhhcCCcccCCHHHHHHHHHHHHHhhCCCEEEEeCccccCCH-------HH
Confidence 53211 010 0 00 0112223344556677777778888889999999999999996 23
Q ss_pred HHHHHHHHHHHHHhCCCH
Q 006117 190 FDLVKRVFRDIQRVGQEP 207 (660)
Q Consensus 190 irLiRRI~RDv~eRGrs~ 207 (660)
......+.++..+.|.+.
T Consensus 179 ~~~l~~~L~~~~~~g~ti 196 (264)
T PRK13546 179 AQKCLDKIYEFKEQNKTI 196 (264)
T ss_pred HHHHHHHHHHHHHCCCEE
Confidence 333444444444445443
No 342
>PRK11147 ABC transporter ATPase component; Reviewed
Probab=99.11 E-value=7.8e-11 Score=136.48 Aligned_cols=136 Identities=13% Similarity=0.112 Sum_probs=103.3
Q ss_pred eccceeeeecCceEEEEecceeeccCCcceEEEEECCCCCcHHHHHHHHHHhC-CCceEEEecCcccccccccccCCCC-
Q 006117 38 PIEDTLSFEKGFFIVIRACQLLAQKNHGIILVGVAGPSGAGKTVFTEKVLNFM-PSIAVITMDNYNDSSRIIDGNFDDP- 115 (660)
Q Consensus 38 ~~~~~ls~~~g~~~vL~~Isl~i~~ge~~~IIGI~GpSGSGKSTLak~L~~lL-p~~g~I~lDg~~~~~~~i~~vfq~p- 115 (660)
...+++++.++...++++++|.+.+|+ ++||+|+||||||||+++|++.+ |+.|.|.++. . ..++|++|++
T Consensus 320 l~~~~l~~~~~~~~il~~vsl~i~~Ge---~~~l~G~NGsGKSTLlk~l~G~~~p~~G~i~~~~-~---~~i~y~~q~~~ 392 (635)
T PRK11147 320 FEMENVNYQIDGKQLVKDFSAQVQRGD---KIALIGPNGCGKTTLLKLMLGQLQADSGRIHCGT-K---LEVAYFDQHRA 392 (635)
T ss_pred EEEeeeEEEECCeEEEcCcEEEEcCCC---EEEEECCCCCcHHHHHHHHhCCCCCCCcEEEECC-C---cEEEEEeCccc
Confidence 344666666677789999999999999 99999999999999999999998 7899998842 1 2477888875
Q ss_pred CCCchhhHHHHHHhhhcCc-----c--c-------cc--ccccccccccccceeeecCCccEEEEecceeecccccCCCC
Q 006117 116 RLTDYDTLLENIRGLKEGK-----A--V-------QV--PIYDFKSSSRIGYRTLEVPSSRIVIIEGIYALSEKLRPLID 179 (660)
Q Consensus 116 ~l~d~~tl~e~L~~L~~Gk-----~--I-------~~--PiyD~s~~~rs~~~~~~v~~a~VVIVEGilaL~deLr~llD 179 (660)
.+++..++.+++....... . + .. ...+...+..++++..++..+..++.++.+++.||+.+.+|
T Consensus 393 ~l~~~~tv~e~l~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgGekqRl~la~al~~~p~lLlLDEPt~~LD 472 (635)
T PRK11147 393 ELDPEKTVMDNLAEGKQEVMVNGRPRHVLGYLQDFLFHPKRAMTPVKALSGGERNRLLLARLFLKPSNLLILDEPTNDLD 472 (635)
T ss_pred ccCCCCCHHHHHHhhcccccccchHHHHHHHHHhcCCCHHHHhChhhhCCHHHHHHHHHHHHHhcCCCEEEEcCCCCCCC
Confidence 4667778888876421100 0 0 01 01223334566778888888899999999999999999999
Q ss_pred E
Q 006117 180 L 180 (660)
Q Consensus 180 l 180 (660)
.
T Consensus 473 ~ 473 (635)
T PRK11147 473 V 473 (635)
T ss_pred H
Confidence 7
No 343
>COG4674 Uncharacterized ABC-type transport system, ATPase component [General function prediction only]
Probab=99.11 E-value=1.8e-10 Score=114.55 Aligned_cols=139 Identities=17% Similarity=0.147 Sum_probs=103.3
Q ss_pred eeccceeeeecCceEEEEecceeeccCCcceEEEEECCCCCcHHHHHHHHHHhC-CCceEEEecCc-ccc--------cc
Q 006117 37 VPIEDTLSFEKGFFIVIRACQLLAQKNHGIILVGVAGPSGAGKTVFTEKVLNFM-PSIAVITMDNY-NDS--------SR 106 (660)
Q Consensus 37 ~~~~~~ls~~~g~~~vL~~Isl~i~~ge~~~IIGI~GpSGSGKSTLak~L~~lL-p~~g~I~lDg~-~~~--------~~ 106 (660)
+...+.++..+|.|.+|+++||.+..|+ +-.|+|||||||||++..|.+.. |..|.+.++|. +.. ..
T Consensus 5 iL~~~~vsVsF~GF~Aln~ls~~v~~Ge---lr~lIGpNGAGKTT~mD~ItGKtrp~~G~v~f~g~~dl~~~~e~~IAr~ 81 (249)
T COG4674 5 ILYLDGVSVSFGGFKALNDLSFSVDPGE---LRVLIGPNGAGKTTLMDVITGKTRPQEGEVLFDGDTDLTKLPEHRIARA 81 (249)
T ss_pred eEEEeceEEEEcceeeeeeeEEEecCCe---EEEEECCCCCCceeeeeeecccCCCCcceEEEcCchhhccCCHHHHHHh
Confidence 3455677788899999999999999999 99999999999999999999998 78899999993 322 23
Q ss_pred cccccCCCCCCCchhhHHHHHHhhhcCc-cccccc------------------------ccccccccccceeeecCCccE
Q 006117 107 IIDGNFDDPRLTDYDTLLENIRGLKEGK-AVQVPI------------------------YDFKSSSRIGYRTLEVPSSRI 161 (660)
Q Consensus 107 ~i~~vfq~p~l~d~~tl~e~L~~L~~Gk-~I~~Pi------------------------yD~s~~~rs~~~~~~v~~a~V 161 (660)
.++--||.|..|...++.+||.--...+ .+.... -+......+-++++.....-+
T Consensus 82 GIGRKFQ~PtVfe~ltV~eNLelA~~~~k~v~a~L~~r~~~~e~~ride~La~igL~~~~~~~A~~LSHGqKQwLEIGMl 161 (249)
T COG4674 82 GIGRKFQKPTVFENLTVRENLELALNRDKSVFASLFARLRAEERRRIDELLATIGLGDERDRLAALLSHGQKQWLEIGML 161 (249)
T ss_pred ccCccccCCeehhhccHHHHHHHHhcCCcchHHHhhhhcChhHHHHHHHHHHHcccchhhhhhhhhhccchhhhhhhhee
Confidence 4677899999999999999997543322 211110 011111122235556677778
Q ss_pred EEEecceeecccccCCC
Q 006117 162 VIIEGIYALSEKLRPLI 178 (660)
Q Consensus 162 VIVEGilaL~deLr~ll 178 (660)
+.-++.+++.||+...+
T Consensus 162 l~Q~P~lLLlDEPvAGM 178 (249)
T COG4674 162 LAQDPKLLLLDEPVAGM 178 (249)
T ss_pred eccCCcEEEecCccCCC
Confidence 88889998888877655
No 344
>TIGR03375 type_I_sec_LssB type I secretion system ATPase, LssB family. Type I protein secretion is a system in some Gram-negative bacteria to export proteins (often proteases) across both inner and outer membranes to the extracellular medium. This is one of three proteins of the type I secretion apparatus. Targeted proteins are not cleaved at the N-terminus, but rather carry signals located toward the extreme C-terminus to direct type I secretion. This model is related to models TIGR01842 and TIGR01846, and to bacteriocin ABC transporters that cleave their substrates during export.
Probab=99.11 E-value=6.6e-11 Score=138.11 Aligned_cols=137 Identities=22% Similarity=0.210 Sum_probs=106.0
Q ss_pred cceeeeecC--ceEEEEecceeeccCCcceEEEEECCCCCcHHHHHHHHHHhC-CCceEEEecCccccc-------cccc
Q 006117 40 EDTLSFEKG--FFIVIRACQLLAQKNHGIILVGVAGPSGAGKTVFTEKVLNFM-PSIAVITMDNYNDSS-------RIID 109 (660)
Q Consensus 40 ~~~ls~~~g--~~~vL~~Isl~i~~ge~~~IIGI~GpSGSGKSTLak~L~~lL-p~~g~I~lDg~~~~~-------~~i~ 109 (660)
-++++|.++ ...+|++++|.+++|+ .|+|+|+||||||||++.|++++ |..|.|.+||.+... +.++
T Consensus 466 ~~~vsf~Y~~~~~~vL~~i~l~i~~G~---~iaIvG~sGsGKSTLlklL~gl~~p~~G~I~idg~~l~~~~~~~lr~~i~ 542 (694)
T TIGR03375 466 FRNVSFAYPGQETPALDNVSLTIRPGE---KVAIIGRIGSGKSTLLKLLLGLYQPTEGSVLLDGVDIRQIDPADLRRNIG 542 (694)
T ss_pred EEEEEEEeCCCCccceeeeeEEECCCC---EEEEECCCCCCHHHHHHHHhcCCCCCCceEEECCEEhhhCCHHHHHhccE
Confidence 345566653 3569999999999999 99999999999999999999998 899999999975432 4688
Q ss_pred ccCCCCCCCchhhHHHHHHhhhcC---c-------------cc-ccc-cccccc----cccccceeeecCCccEEEEecc
Q 006117 110 GNFDDPRLTDYDTLLENIRGLKEG---K-------------AV-QVP-IYDFKS----SSRIGYRTLEVPSSRIVIIEGI 167 (660)
Q Consensus 110 ~vfq~p~l~d~~tl~e~L~~L~~G---k-------------~I-~~P-iyD~s~----~~rs~~~~~~v~~a~VVIVEGi 167 (660)
+++|++.+|+ .++++|+...... + .+ ..| .||-.. ...++++.+++..++.++-++.
T Consensus 543 ~v~Q~~~lf~-~TI~eNi~~~~~~~~~~~i~~a~~~~~l~~~i~~lp~gl~T~i~e~G~~LSgGQrQRlalARall~~p~ 621 (694)
T TIGR03375 543 YVPQDPRLFY-GTLRDNIALGAPYADDEEILRAAELAGVTEFVRRHPDGLDMQIGERGRSLSGGQRQAVALARALLRDPP 621 (694)
T ss_pred EECCChhhhh-hhHHHHHhCCCCCCCHHHHHHHHHHcChHHHHHhCcccccceecCCCCCCCHHHHHHHHHHHHHhcCCC
Confidence 9999999987 5999998643211 0 01 112 122222 2345678888999999999999
Q ss_pred eeecccccCCCCE
Q 006117 168 YALSEKLRPLIDL 180 (660)
Q Consensus 168 laL~deLr~llDl 180 (660)
+++.||+...+|.
T Consensus 622 iliLDE~Ts~LD~ 634 (694)
T TIGR03375 622 ILLLDEPTSAMDN 634 (694)
T ss_pred EEEEeCCCCCCCH
Confidence 9999999999997
No 345
>TIGR02204 MsbA_rel ABC transporter, permease/ATP-binding protein. This protein is related to a Proteobacterial ATP transporter that exports lipid A and to eukaryotic P-glycoproteins.
Probab=99.11 E-value=4.1e-11 Score=136.44 Aligned_cols=137 Identities=21% Similarity=0.296 Sum_probs=101.8
Q ss_pred cceeeeecCc---eEEEEecceeeccCCcceEEEEECCCCCcHHHHHHHHHHhC-CCceEEEecCccccc-------ccc
Q 006117 40 EDTLSFEKGF---FIVIRACQLLAQKNHGIILVGVAGPSGAGKTVFTEKVLNFM-PSIAVITMDNYNDSS-------RII 108 (660)
Q Consensus 40 ~~~ls~~~g~---~~vL~~Isl~i~~ge~~~IIGI~GpSGSGKSTLak~L~~lL-p~~g~I~lDg~~~~~-------~~i 108 (660)
.++++|.++. ..++++++|.+++|+ .++|+|+||||||||++.|++++ |..|.|.+||.+... +.+
T Consensus 340 ~~~v~f~y~~~~~~~iL~~inl~i~~Ge---~i~IvG~sGsGKSTLlklL~gl~~p~~G~I~i~g~~i~~~~~~~~~~~i 416 (576)
T TIGR02204 340 FEQVNFAYPARPDQPALDGLNLTVRPGE---TVALVGPSGAGKSTLFQLLLRFYDPQSGRILLDGVDLRQLDPAELRARM 416 (576)
T ss_pred EEEEEEECCCCCCCccccceeEEecCCC---EEEEECCCCCCHHHHHHHHHhccCCCCCEEEECCEEHHhcCHHHHHHhc
Confidence 3455555532 569999999999999 99999999999999999999998 789999999975322 458
Q ss_pred cccCCCCCCCchhhHHHHHHhhhcC----------------cccc-cc-ccccc----ccccccceeeecCCccEEEEec
Q 006117 109 DGNFDDPRLTDYDTLLENIRGLKEG----------------KAVQ-VP-IYDFK----SSSRIGYRTLEVPSSRIVIIEG 166 (660)
Q Consensus 109 ~~vfq~p~l~d~~tl~e~L~~L~~G----------------k~I~-~P-iyD~s----~~~rs~~~~~~v~~a~VVIVEG 166 (660)
++++|+|.+|+ .++++|+...... +.+. .| .++.. ....++++.+++..++.++-+.
T Consensus 417 ~~~~Q~~~lf~-~Ti~~Ni~~~~~~~~~~~~~~~l~~~~l~~~i~~l~~gl~t~i~~~g~~LSgGq~Qrl~laRal~~~~ 495 (576)
T TIGR02204 417 ALVPQDPVLFA-ASVMENIRYGRPDATDEEVEAAARAAHAHEFISALPEGYDTYLGERGVTLSGGQRQRIAIARAILKDA 495 (576)
T ss_pred eEEccCCcccc-ccHHHHHhcCCCCCCHHHHHHHHHHcCcHHHHHhCCCCCCceeCCCCCcCCHHHHHHHHHHHHHHhCC
Confidence 89999998886 5788887642210 0010 11 11211 1234567888888888888888
Q ss_pred ceeecccccCCCCE
Q 006117 167 IYALSEKLRPLIDL 180 (660)
Q Consensus 167 ilaL~deLr~llDl 180 (660)
..++.||+...+|.
T Consensus 496 ~ililDEpts~lD~ 509 (576)
T TIGR02204 496 PILLLDEATSALDA 509 (576)
T ss_pred CeEEEeCcccccCH
Confidence 88888999999986
No 346
>PRK03333 coaE dephospho-CoA kinase/protein folding accessory domain-containing protein; Provisional
Probab=99.10 E-value=1.1e-10 Score=128.33 Aligned_cols=257 Identities=16% Similarity=0.181 Sum_probs=139.8
Q ss_pred eEEEEECCCCCcHHHHHHHHHHhCCCceEEEecCcccc----c----cc----cc-ccCCCCCCCchhhHHHHHHh----
Q 006117 67 ILVGVAGPSGAGKTVFTEKVLNFMPSIAVITMDNYNDS----S----RI----ID-GNFDDPRLTDYDTLLENIRG---- 129 (660)
Q Consensus 67 ~IIGI~GpSGSGKSTLak~L~~lLp~~g~I~lDg~~~~----~----~~----i~-~vfq~p~l~d~~tl~e~L~~---- 129 (660)
..|||+|+.||||||+++.|+.+ +...|+.|..... . .. .+ .+++..+.+|...+.+.+..
T Consensus 2 ~~IgltG~igsGKStv~~~L~~~--G~~vidaD~i~~~l~~~~~~~~~~i~~~fG~~il~~~G~idr~~L~~~vF~~~~~ 79 (395)
T PRK03333 2 LRIGLTGGIGAGKSTVAARLAEL--GAVVVDADVLAREVVEPGTEGLAALVAAFGDDILLADGALDRPALAAKAFADDEA 79 (395)
T ss_pred eEEEEECCCCCCHHHHHHHHHHC--CCeEEehHHHHHHHhcCChHHHHHHHHHhChHhcCCCCcCCHHHHHHHHhCCHHH
Confidence 47999999999999999999984 5667887764111 0 00 11 12223345666666555532
Q ss_pred hhcCcccccccccccccccccceeeecCCccEEEEecceeecccccCCCCEEEEEEcChhHHHHHHHHHHHHHhCCCHHH
Q 006117 130 LKEGKAVQVPIYDFKSSSRIGYRTLEVPSSRIVIIEGIYALSEKLRPLIDLRVSVTGGVHFDLVKRVFRDIQRVGQEPEE 209 (660)
Q Consensus 130 L~~Gk~I~~PiyD~s~~~rs~~~~~~v~~a~VVIVEGilaL~deLr~llDlkIfVdad~dirLiRRI~RDv~eRGrs~E~ 209 (660)
++.-+.+.+|..-........ ......++++|..+++...+...||.+|||++|.++++. |...++|.+.++
T Consensus 80 ~~~le~i~hP~I~~~i~~~i~----~~~~~~vvv~eipLL~E~~~~~~~D~iI~V~ap~e~ri~----Rl~~rRg~s~~~ 151 (395)
T PRK03333 80 RAVLNGIVHPLVGARRAELIA----AAPEDAVVVEDIPLLVESGMAPLFHLVVVVDADVEVRVR----RLVEQRGMAEAD 151 (395)
T ss_pred HHHHHHhhhHHHHHHHHHHHH----hcCCCCEEEEEeeeeecCCchhhCCEEEEEECCHHHHHH----HHHhcCCCCHHH
Confidence 112233444532211111110 112234666666666667888999999999999887653 334457999998
Q ss_pred HHHHHHhccccchhhcccCCcCcCcEEEeCCCCCCCCCCCceEEeccCCCccHHHHHHHhcccccccccceeeeeecCCC
Q 006117 210 IIHQISETVYPMYKAFIEPDLQTAHIKIINKFNPFTGFQNPTYILKSTRPVTVDEIKAVMSKEHTETTEETYDIYLLPPG 289 (660)
Q Consensus 210 Vl~qy~~~v~P~~~~fIeP~k~~ADiII~N~~~p~~g~~n~v~iLKsa~~v~~~~IravL~~~~~~~~~~~~DIYl~pP~ 289 (660)
+..++..+. ..++.++.||++|.|+.++..- ... -..+.......++.....-.+..+..|-+.|..
T Consensus 152 a~~ri~~Q~------~~e~k~~~AD~vIdN~~s~e~l-~~~------v~~~l~~~~~~~~~~~~~~~~~~~~~v~v~~yd 218 (395)
T PRK03333 152 ARARIAAQA------SDEQRRAVADVWLDNSGTPDEL-VEA------VRALWADRLLPFAHNLRARRRAARAPPRLVPAD 218 (395)
T ss_pred HHHHHHhcC------ChHHHHHhCCEEEECCCCHHHH-HHH------HHHHHHHHHhhHHHHHhcCCCCCCCCceEeCCC
Confidence 877774432 2344578999999988765310 000 001111112222233333333333345555544
Q ss_pred CC----cccccceEEEeecCCeEEEEEe--eeecCCCceeeeeEEEEeehhhH-------HHHhhcCCeEEE
Q 006117 290 ED----PDACQSYLRMRNRDGKYNLMFE--EWVTDSPFIISPRITFEVSVRLL-------GGLMALGYTIAT 348 (660)
Q Consensus 290 ~d----~~~tde~LRvR~~dg~~~Ltyk--g~~~d~~fi~rp~~efeV~v~~~-------~gL~~LGy~~aa 348 (660)
+. |+....-| +..=|...+.++ |.-.=.....+|-+++-|+|... ..|.++||....
T Consensus 219 p~W~~~f~~e~~~l--~~~l~~~~~~IeHIGSTsVpGl~AKPiIDI~v~V~~~~~~~~~~~~l~~~Gy~~~~ 288 (395)
T PRK03333 219 PSWPAQAQRIVARL--KTAAGHKALRVDHIGSTAVPGLDAKDVIDIQVTVESLAVADELAEPLAAAGFPRLP 288 (395)
T ss_pred CCcHHHHHHHHHHH--HHhcCccceEEEEeccCCCCCCccCCeeeEEEeeCChHHHHHHHHHHHHCCCcccc
Confidence 43 22211111 221222333443 22222222679999999986544 467999998653
No 347
>PRK13657 cyclic beta-1,2-glucan ABC transporter; Provisional
Probab=99.10 E-value=6.2e-11 Score=135.71 Aligned_cols=137 Identities=20% Similarity=0.284 Sum_probs=105.2
Q ss_pred cceeeeecCc-eEEEEecceeeccCCcceEEEEECCCCCcHHHHHHHHHHhC-CCceEEEecCccccc-------ccccc
Q 006117 40 EDTLSFEKGF-FIVIRACQLLAQKNHGIILVGVAGPSGAGKTVFTEKVLNFM-PSIAVITMDNYNDSS-------RIIDG 110 (660)
Q Consensus 40 ~~~ls~~~g~-~~vL~~Isl~i~~ge~~~IIGI~GpSGSGKSTLak~L~~lL-p~~g~I~lDg~~~~~-------~~i~~ 110 (660)
.++++|.++. ..+++++++.+++|+ .++|+|+||||||||++.|++++ |..|.|.+||.+... +.+++
T Consensus 337 ~~~vsf~y~~~~~iL~~inl~i~~G~---~v~IvG~sGsGKSTLl~lL~gl~~p~~G~I~i~g~~i~~~~~~~~r~~i~~ 413 (588)
T PRK13657 337 FDDVSFSYDNSRQGVEDVSFEAKPGQ---TVAIVGPTGAGKSTLINLLQRVFDPQSGRILIDGTDIRTVTRASLRRNIAV 413 (588)
T ss_pred EEEEEEEeCCCCceecceeEEECCCC---EEEEECCCCCCHHHHHHHHhcCcCCCCCEEEECCEEhhhCCHHHHHhheEE
Confidence 3455565533 469999999999999 99999999999999999999998 889999999975332 46889
Q ss_pred cCCCCCCCchhhHHHHHHhhhcC---c-------------ccc-cc-cccccc----cccccceeeecCCccEEEEecce
Q 006117 111 NFDDPRLTDYDTLLENIRGLKEG---K-------------AVQ-VP-IYDFKS----SSRIGYRTLEVPSSRIVIIEGIY 168 (660)
Q Consensus 111 vfq~p~l~d~~tl~e~L~~L~~G---k-------------~I~-~P-iyD~s~----~~rs~~~~~~v~~a~VVIVEGil 168 (660)
++|+|.+|+ .++++|+...... + .+. .| .+|-.. ...++++.+++..++.++-++.+
T Consensus 414 v~Q~~~lf~-~Ti~~Ni~~~~~~~~d~~i~~al~~~~l~~~i~~lp~gldt~i~~~g~~LSgGq~QRialARall~~~~i 492 (588)
T PRK13657 414 VFQDAGLFN-RSIEDNIRVGRPDATDEEMRAAAERAQAHDFIERKPDGYDTVVGERGRQLSGGERQRLAIARALLKDPPI 492 (588)
T ss_pred EecCccccc-ccHHHHHhcCCCCCCHHHHHHHHHHhCHHHHHHhCcccccchhcCCCCCCCHHHHHHHHHHHHHhcCCCE
Confidence 999999987 6899998753211 0 010 12 122221 13566788889999999999999
Q ss_pred eecccccCCCCE
Q 006117 169 ALSEKLRPLIDL 180 (660)
Q Consensus 169 aL~deLr~llDl 180 (660)
++.||+...+|.
T Consensus 493 liLDEpts~LD~ 504 (588)
T PRK13657 493 LILDEATSALDV 504 (588)
T ss_pred EEEeCCccCCCH
Confidence 999999999986
No 348
>COG4133 CcmA ABC-type transport system involved in cytochrome c biogenesis, ATPase component [Posttranslational modification, protein turnover, chaperones]
Probab=99.10 E-value=9.5e-11 Score=115.80 Aligned_cols=140 Identities=16% Similarity=0.178 Sum_probs=104.8
Q ss_pred eccceeeeecCceEEEEecceeeccCCcceEEEEECCCCCcHHHHHHHHHHhC-CCceEEEecCccccc------ccccc
Q 006117 38 PIEDTLSFEKGFFIVIRACQLLAQKNHGIILVGVAGPSGAGKTVFTEKVLNFM-PSIAVITMDNYNDSS------RIIDG 110 (660)
Q Consensus 38 ~~~~~ls~~~g~~~vL~~Isl~i~~ge~~~IIGI~GpSGSGKSTLak~L~~lL-p~~g~I~lDg~~~~~------~~i~~ 110 (660)
...+.++.+++...++.+++|.+.+|+ .+-|.||||||||||+++|++++ |++|.|.+++..... +.+-|
T Consensus 3 L~a~~L~~~R~e~~lf~~L~f~l~~Ge---~~~i~G~NG~GKTtLLRilaGLl~p~~G~v~~~~~~i~~~~~~~~~~l~y 79 (209)
T COG4133 3 LEAENLSCERGERTLFSDLSFTLNAGE---ALQITGPNGAGKTTLLRILAGLLRPDAGEVYWQGEPIQNVRESYHQALLY 79 (209)
T ss_pred chhhhhhhccCcceeecceeEEEcCCC---EEEEECCCCCcHHHHHHHHHcccCCCCCeEEecCCCCccchhhHHHHHHH
Confidence 456778888999999999999999999 99999999999999999999999 999999999865432 22344
Q ss_pred cCCCCCCCchhhHHHHHHhhhc--Cc--cccc----------ccccccccccccceeeecCCccEEEEecceeecccccC
Q 006117 111 NFDDPRLTDYDTLLENIRGLKE--GK--AVQV----------PIYDFKSSSRIGYRTLEVPSSRIVIIEGIYALSEKLRP 176 (660)
Q Consensus 111 vfq~p~l~d~~tl~e~L~~L~~--Gk--~I~~----------PiyD~s~~~rs~~~~~~v~~a~VVIVEGilaL~deLr~ 176 (660)
.-..+.+-..+++.|||..+.. +. ...+ -.-|...+..+.+++.+++.++.++--.++-+.||+..
T Consensus 80 LGH~~giK~eLTa~ENL~F~~~~~~~~~~~~i~~Al~~vgL~g~~dlp~~~LSAGQqRRvAlArL~ls~~pLWiLDEP~t 159 (209)
T COG4133 80 LGHQPGIKTELTALENLHFWQRFHGSGNAATIWEALAQVGLAGLEDLPVGQLSAGQQRRVALARLWLSPAPLWILDEPFT 159 (209)
T ss_pred hhccccccchhhHHHHHHHHHHHhCCCchhhHHHHHHHcCcccccccchhhcchhHHHHHHHHHHHcCCCCceeecCccc
Confidence 4455677788899999987654 11 1000 01122223334456667788888888888888888888
Q ss_pred CCCE
Q 006117 177 LIDL 180 (660)
Q Consensus 177 llDl 180 (660)
.+|.
T Consensus 160 aLDk 163 (209)
T COG4133 160 ALDK 163 (209)
T ss_pred ccCH
Confidence 8886
No 349
>KOG0055 consensus Multidrug/pheromone exporter, ABC superfamily [Secondary metabolites biosynthesis, transport and catabolism]
Probab=99.10 E-value=5.8e-11 Score=142.43 Aligned_cols=136 Identities=21% Similarity=0.273 Sum_probs=109.6
Q ss_pred ceeeeecC---ceEEEEecceeeccCCcceEEEEECCCCCcHHHHHHHHHHhC-CCceEEEecCccccc-------cccc
Q 006117 41 DTLSFEKG---FFIVIRACQLLAQKNHGIILVGVAGPSGAGKTVFTEKVLNFM-PSIAVITMDNYNDSS-------RIID 109 (660)
Q Consensus 41 ~~ls~~~g---~~~vL~~Isl~i~~ge~~~IIGI~GpSGSGKSTLak~L~~lL-p~~g~I~lDg~~~~~-------~~i~ 109 (660)
++++|.|. ...|++++++.+++|+ .++|+|||||||||+..+|...+ |..|.|.+||++... +.++
T Consensus 991 ~~V~F~YPsRP~~~Il~~l~l~i~~Gq---TvALVG~SGsGKSTvI~LLeRfYdp~~G~V~IDg~dik~lnl~~LR~~i~ 1067 (1228)
T KOG0055|consen 991 RNVSFAYPTRPDVPVLNNLSLSIRAGQ---TVALVGPSGSGKSTVISLLERFYDPDAGKVKIDGVDIKDLNLKWLRKQIG 1067 (1228)
T ss_pred eeeEeeCCCCCCchhhcCCcEEecCCC---EEEEECCCCCCHHHHHHHHHHhcCCCCCeEEECCcccccCCHHHHHHhcc
Confidence 44555553 4579999999999999 99999999999999999999998 999999999986543 5688
Q ss_pred ccCCCCCCCchhhHHHHHHhhhcCc----------------c-cccc-cccccccc----cccceeeecCCccEEEEecc
Q 006117 110 GNFDDPRLTDYDTLLENIRGLKEGK----------------A-VQVP-IYDFKSSS----RIGYRTLEVPSSRIVIIEGI 167 (660)
Q Consensus 110 ~vfq~p~l~d~~tl~e~L~~L~~Gk----------------~-I~~P-iyD~s~~~----rs~~~~~~v~~a~VVIVEGi 167 (660)
.+-|+|.+|+ .+++||+..-...- - ...| -||-..++ .+++|+++++.++.++=++.
T Consensus 1068 lVsQEP~LF~-~TIrENI~YG~~~vs~~eIi~Aak~ANaH~FI~sLP~GyDT~vGerG~QLSGGQKQRIAIARAilRnPk 1146 (1228)
T KOG0055|consen 1068 LVSQEPVLFN-GTIRENIAYGSEEVSEEEIIEAAKLANAHNFISSLPQGYDTRVGERGVQLSGGQKQRIAIARAILRNPK 1146 (1228)
T ss_pred eeccCchhhc-ccHHHHHhccCCCCCHHHHHHHHHHhhhHHHHhcCcCcccCccCcccCcCCchHHHHHHHHHHHHcCCC
Confidence 9999999998 68999887541110 0 1223 36665553 46789999999999999999
Q ss_pred eeecccccCCCCE
Q 006117 168 YALSEKLRPLIDL 180 (660)
Q Consensus 168 laL~deLr~llDl 180 (660)
.++.||-...+|-
T Consensus 1147 ILLLDEATSALDs 1159 (1228)
T KOG0055|consen 1147 ILLLDEATSALDS 1159 (1228)
T ss_pred eeeeeccchhhhh
Confidence 9999999998886
No 350
>TIGR02203 MsbA_lipidA lipid A export permease/ATP-binding protein MsbA. This family consists of a single polypeptide chain transporter in the ATP-binding cassette (ABC) transporter family, MsbA, which exports lipid A. It may also act in multidrug resistance. Lipid A, a part of lipopolysaccharide, is found in the outer leaflet of the outer membrane of most Gram-negative bacteria. Members of this family are restricted to the Proteobacteria (although lipid A is more broadly distributed) and often are clustered with lipid A biosynthesis genes.
Probab=99.09 E-value=6e-11 Score=134.85 Aligned_cols=137 Identities=18% Similarity=0.217 Sum_probs=104.6
Q ss_pred cceeeeecC--ceEEEEecceeeccCCcceEEEEECCCCCcHHHHHHHHHHhC-CCceEEEecCcccc-------ccccc
Q 006117 40 EDTLSFEKG--FFIVIRACQLLAQKNHGIILVGVAGPSGAGKTVFTEKVLNFM-PSIAVITMDNYNDS-------SRIID 109 (660)
Q Consensus 40 ~~~ls~~~g--~~~vL~~Isl~i~~ge~~~IIGI~GpSGSGKSTLak~L~~lL-p~~g~I~lDg~~~~-------~~~i~ 109 (660)
.++++|.+. ...++++++|.+++|+ .|+|+|+||||||||++.|++++ |..|.|.+||.... ...++
T Consensus 333 ~~~v~f~y~~~~~~il~~inl~i~~G~---~v~IvG~sGsGKSTLl~lL~gl~~~~~G~I~i~g~~i~~~~~~~~~~~i~ 409 (571)
T TIGR02203 333 FRNVTFRYPGRDRPALDSISLVIEPGE---TVALVGRSGSGKSTLVNLIPRFYEPDSGQILLDGHDLADYTLASLRRQVA 409 (571)
T ss_pred EEEEEEEcCCCCCccccCeeEEecCCC---EEEEECCCCCCHHHHHHHHHhccCCCCCeEEECCEeHHhcCHHHHHhhce
Confidence 344555543 3568999999999999 99999999999999999999998 88999999996432 24588
Q ss_pred ccCCCCCCCchhhHHHHHHhhhc-C--c--------------cc-ccc-ccccccc----ccccceeeecCCccEEEEec
Q 006117 110 GNFDDPRLTDYDTLLENIRGLKE-G--K--------------AV-QVP-IYDFKSS----SRIGYRTLEVPSSRIVIIEG 166 (660)
Q Consensus 110 ~vfq~p~l~d~~tl~e~L~~L~~-G--k--------------~I-~~P-iyD~s~~----~rs~~~~~~v~~a~VVIVEG 166 (660)
+++|+|.+|+ .++++|+..... . . .+ ..| -+|...+ ..++++.+++..++.++-+.
T Consensus 410 ~v~Q~~~lf~-~Ti~~Ni~~~~~~~~~~~~i~~~l~~~~l~~~i~~lp~gldt~i~~~g~~LSgGqrQRiaLARall~~~ 488 (571)
T TIGR02203 410 LVSQDVVLFN-DTIANNIAYGRTEQADRAEIERALAAAYAQDFVDKLPLGLDTPIGENGVLLSGGQRQRLAIARALLKDA 488 (571)
T ss_pred EEccCccccc-ccHHHHHhcCCCCCCCHHHHHHHHHHcChHHHHHhCcCcccceecCCCCcCCHHHHHHHHHHHHHhcCC
Confidence 9999999887 589998864321 0 0 01 112 1332222 24677888899999999999
Q ss_pred ceeecccccCCCCE
Q 006117 167 IYALSEKLRPLIDL 180 (660)
Q Consensus 167 ilaL~deLr~llDl 180 (660)
..++.||+...+|.
T Consensus 489 ~illLDEpts~LD~ 502 (571)
T TIGR02203 489 PILILDEATSALDN 502 (571)
T ss_pred CEEEEeCccccCCH
Confidence 99999999999986
No 351
>KOG3308 consensus Uncharacterized protein of the uridine kinase family [Nucleotide transport and metabolism]
Probab=99.09 E-value=9.2e-11 Score=116.66 Aligned_cols=169 Identities=20% Similarity=0.332 Sum_probs=113.0
Q ss_pred cceEEEEECCCCCcHHHHHHHHHHhCCCceEEEecCcccccccc--c----ccCCCCCCCchhhHHHHHHhhhcCcccc-
Q 006117 65 GIILVGVAGPSGAGKTVFTEKVLNFMPSIAVITMDNYNDSSRII--D----GNFDDPRLTDYDTLLENIRGLKEGKAVQ- 137 (660)
Q Consensus 65 ~~~IIGI~GpSGSGKSTLak~L~~lLp~~g~I~lDg~~~~~~~i--~----~vfq~p~l~d~~tl~e~L~~L~~Gk~I~- 137 (660)
+.+||||.|.+.|||||||+.|...+|++..|+.|+|+.+...+ . .+|+-+...++..+.+.+.....+....
T Consensus 3 K~~ivgiSG~TnsGKTTLak~l~~~f~~~~lIhqDDFyKp~~Ei~v~~~n~~~wd~~esLdm~~fl~~ia~~l~~~~~~~ 82 (225)
T KOG3308|consen 3 KTLIVGISGCTNSGKTTLAKSLHRFFPGCSLIHQDDFYKPENEIEVDYNNIDNWDLLESLDMEKFLEKIATWLDSRHNAP 82 (225)
T ss_pred eEEEEEeecccCCCHhHHHHHHHHHccCCeeeccccccCchhhhhcccCCcchhcchhhhhHHHHHHHHHHHhcCccccc
Confidence 35799999999999999999999999989999999997665332 1 2344455667777777666544432111
Q ss_pred cc---ccccc--ccccccceeeecCCccEEEEecceeec-ccccCCCCEEEEEEcChhHHHHHHHHHHHHHhCCCHHHHH
Q 006117 138 VP---IYDFK--SSSRIGYRTLEVPSSRIVIIEGIYALS-EKLRPLIDLRVSVTGGVHFDLVKRVFRDIQRVGQEPEEII 211 (660)
Q Consensus 138 ~P---iyD~s--~~~rs~~~~~~v~~a~VVIVEGilaL~-deLr~llDlkIfVdad~dirLiRRI~RDv~eRGrs~E~Vl 211 (660)
.+ ..+.. .+-.... ........++|+||.+++. +++...+|.+|++.+|.+++..||-. +.|+-+.+.
T Consensus 83 ~ar~~~v~~~~~~~~~~~~-q~~~~~~~iviidGfmiy~y~p~~~~~d~~im~~~~y~~~krRr~~----Rt~y~p~~t- 156 (225)
T KOG3308|consen 83 EAREHLVSYANFEHYAQQF-QIKAYKNHIVIIDGFMIYNYKPQVDLFDRIIMLTLDYETCKRRREA----RTYYPPDDT- 156 (225)
T ss_pred hHhhhhhhhhHHHHHhhhc-CcccccCcEEEEecceEEecchhhhhhhhheeeeccHHHHHHhhcc----cccCCCCCC-
Confidence 01 11110 0101111 2334667899999999996 77889999999999998887655543 335444333
Q ss_pred HHHHhccccchhhcccCCcCcC--cEEEeC
Q 006117 212 HQISETVYPMYKAFIEPDLQTA--HIKIIN 239 (660)
Q Consensus 212 ~qy~~~v~P~~~~fIeP~k~~A--DiII~N 239 (660)
-++...+||.|.++.+.....+ |....|
T Consensus 157 gyfd~~~~P~Y~~~~~~~~d~~~h~~~fln 186 (225)
T KOG3308|consen 157 GYFDPVVWPHYEKNFEEARDRSRHDSLFLN 186 (225)
T ss_pred ccccCccchHHHHHHHHHHhhcccceeeec
Confidence 4555669999998877655444 666654
No 352
>PRK13409 putative ATPase RIL; Provisional
Probab=99.08 E-value=1.7e-10 Score=132.80 Aligned_cols=151 Identities=16% Similarity=0.172 Sum_probs=111.9
Q ss_pred cceeeeecCceEEEEecceeeccCCcceEEEEECCCCCcHHHHHHHHHHhC-CCceEEEecCcccccccccccCCCCCCC
Q 006117 40 EDTLSFEKGFFIVIRACQLLAQKNHGIILVGVAGPSGAGKTVFTEKVLNFM-PSIAVITMDNYNDSSRIIDGNFDDPRLT 118 (660)
Q Consensus 40 ~~~ls~~~g~~~vL~~Isl~i~~ge~~~IIGI~GpSGSGKSTLak~L~~lL-p~~g~I~lDg~~~~~~~i~~vfq~p~l~ 118 (660)
.+++++.++.+ .+++++|.+.+|+ ++||+|+||||||||+++|++++ |+.|.|.++ ..+++++|++..+
T Consensus 343 ~~~ls~~~~~~-~l~~~s~~i~~Ge---iv~l~G~NGsGKSTLlk~L~Gl~~p~~G~I~~~------~~i~y~~Q~~~~~ 412 (590)
T PRK13409 343 YPDLTKKLGDF-SLEVEGGEIYEGE---VIGIVGPNGIGKTTFAKLLAGVLKPDEGEVDPE------LKISYKPQYIKPD 412 (590)
T ss_pred EcceEEEECCE-EEEecceEECCCC---EEEEECCCCCCHHHHHHHHhCCCCCCceEEEEe------eeEEEecccccCC
Confidence 34455555554 4899999999999 99999999999999999999998 789999876 2478889988877
Q ss_pred chhhHHHHHHhhhcCc-----------cccc-ccccccccccccceeeecCCccEEEEecceeecccccCCCCEEEEEEc
Q 006117 119 DYDTLLENIRGLKEGK-----------AVQV-PIYDFKSSSRIGYRTLEVPSSRIVIIEGIYALSEKLRPLIDLRVSVTG 186 (660)
Q Consensus 119 d~~tl~e~L~~L~~Gk-----------~I~~-PiyD~s~~~rs~~~~~~v~~a~VVIVEGilaL~deLr~llDlkIfVda 186 (660)
...++.+++....... .... ...+...+..++++.+++..+.+++.++.+++.||+...+|.
T Consensus 413 ~~~tv~e~l~~~~~~~~~~~~~~~~L~~l~l~~~~~~~~~~LSGGe~QRvaiAraL~~~p~llLLDEPt~~LD~------ 486 (590)
T PRK13409 413 YDGTVEDLLRSITDDLGSSYYKSEIIKPLQLERLLDKNVKDLSGGELQRVAIAACLSRDADLYLLDEPSAHLDV------ 486 (590)
T ss_pred CCCcHHHHHHHHhhhcChHHHHHHHHHHCCCHHHHhCCcccCCHHHHHHHHHHHHHhcCCCEEEEeCCccCCCH------
Confidence 7788888876431110 0001 123444556777888889999999999999999999999997
Q ss_pred ChhHHHHHHHHHHHHH-hCCCH
Q 006117 187 GVHFDLVKRVFRDIQR-VGQEP 207 (660)
Q Consensus 187 d~dirLiRRI~RDv~e-RGrs~ 207 (660)
.....+.++.++... .|.+.
T Consensus 487 -~~~~~l~~~l~~l~~~~g~tv 507 (590)
T PRK13409 487 -EQRLAVAKAIRRIAEEREATA 507 (590)
T ss_pred -HHHHHHHHHHHHHHHhCCCEE
Confidence 444455555555543 35544
No 353
>PRK10982 galactose/methyl galaxtoside transporter ATP-binding protein; Provisional
Probab=99.08 E-value=1.5e-10 Score=129.79 Aligned_cols=147 Identities=18% Similarity=0.171 Sum_probs=103.5
Q ss_pred EEEEecceeeccCCcceEEEEECCCCCcHHHHHHHHHHhC-CCceEEEecCccccc--------ccccccCCCC---CCC
Q 006117 51 IVIRACQLLAQKNHGIILVGVAGPSGAGKTVFTEKVLNFM-PSIAVITMDNYNDSS--------RIIDGNFDDP---RLT 118 (660)
Q Consensus 51 ~vL~~Isl~i~~ge~~~IIGI~GpSGSGKSTLak~L~~lL-p~~g~I~lDg~~~~~--------~~i~~vfq~p---~l~ 118 (660)
.++++++|.+.+|+ ++||+|+||||||||+++|++++ |..|.|.++|..... +.+++++|++ .+|
T Consensus 262 ~~l~~vsl~i~~Ge---~~~l~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~i~~~~~~~~~~~~i~~~~q~~~~~~~~ 338 (491)
T PRK10982 262 PSIRDVSFDLHKGE---ILGIAGLVGAKRTDIVETLFGIREKSAGTITLHGKKINNHNANEAINHGFALVTEERRSTGIY 338 (491)
T ss_pred cccceeeEEEeCCc---EEEEecCCCCCHHHHHHHHcCCCcCCccEEEECCEECCCCCHHHHHHCCCEEcCCchhhCCcc
Confidence 58999999999999 99999999999999999999998 789999999854321 2367788874 345
Q ss_pred chhhHHHH-----HHhhhc--C----c-------------ccccccccccccccccceeeecCCccEEEEecceeecccc
Q 006117 119 DYDTLLEN-----IRGLKE--G----K-------------AVQVPIYDFKSSSRIGYRTLEVPSSRIVIIEGIYALSEKL 174 (660)
Q Consensus 119 d~~tl~e~-----L~~L~~--G----k-------------~I~~PiyD~s~~~rs~~~~~~v~~a~VVIVEGilaL~deL 174 (660)
+..++.++ +..... + . .+..+..+...+..++++.+++..+..++.++.+++.|||
T Consensus 339 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgGq~qrv~la~al~~~p~illLDEP 418 (491)
T PRK10982 339 AYLDIGFNSLISNIRNYKNKVGLLDNSRMKSDTQWVIDSMRVKTPGHRTQIGSLSGGNQQKVIIGRWLLTQPEILMLDEP 418 (491)
T ss_pred cCCcHHHheehhhhhhhcccccccCcHHHHHHHHHHHHhcCccCCCcccccccCCcHHHHHHHHHHHHhcCCCEEEEcCC
Confidence 55544333 221100 0 0 0111123445556777888888999999999999999999
Q ss_pred cCCCCEEEEEEcChhHHHHHHHHHHHHHhCCCH
Q 006117 175 RPLIDLRVSVTGGVHFDLVKRVFRDIQRVGQEP 207 (660)
Q Consensus 175 r~llDlkIfVdad~dirLiRRI~RDv~eRGrs~ 207 (660)
...+|. .....+.++.++..+.|.++
T Consensus 419 t~gLD~-------~~~~~~~~~l~~l~~~~~tv 444 (491)
T PRK10982 419 TRGIDV-------GAKFEIYQLIAELAKKDKGI 444 (491)
T ss_pred CcccCh-------hHHHHHHHHHHHHHHCCCEE
Confidence 999998 23334444555554445543
No 354
>TIGR01257 rim_protein retinal-specific rim ABC transporter. This model describes the photoreceptor protein (rim protein) in eukaryotes. It is the member of ABC transporter superfamily. Rim protein is a membrane glycoprotein which is localized in the photoreceptor outer segment discs. Mutation/s in its genetic loci is implicated in the recessive Stargardt's disease.
Probab=99.08 E-value=1.2e-10 Score=147.64 Aligned_cols=157 Identities=11% Similarity=0.050 Sum_probs=118.1
Q ss_pred cceeeeec--CceEEEEecceeeccCCcceEEEEECCCCCcHHHHHHHHHHhC-CCceEEEecCcccc------cccccc
Q 006117 40 EDTLSFEK--GFFIVIRACQLLAQKNHGIILVGVAGPSGAGKTVFTEKVLNFM-PSIAVITMDNYNDS------SRIIDG 110 (660)
Q Consensus 40 ~~~ls~~~--g~~~vL~~Isl~i~~ge~~~IIGI~GpSGSGKSTLak~L~~lL-p~~g~I~lDg~~~~------~~~i~~ 110 (660)
.+++++.+ +...++++++|.+.+|+ ++||+|+||||||||+++|+|++ |+.|.|.++|.... .+.+++
T Consensus 931 I~nLsK~y~~~~k~aL~~lsl~I~~Ge---i~aLLG~NGAGKSTLLkiLaGLl~PtsG~I~i~G~dI~~~~~~~r~~IG~ 1007 (2272)
T TIGR01257 931 VKNLVKIFEPSGRPAVDRLNITFYENQ---ITAFLGHNGAGKTTTLSILTGLLPPTSGTVLVGGKDIETNLDAVRQSLGM 1007 (2272)
T ss_pred EEeEEEEecCCCceEEEeeEEEEcCCc---EEEEECCCCChHHHHHHHHhcCCCCCceEEEECCEECcchHHHHhhcEEE
Confidence 34455544 34679999999999999 99999999999999999999998 89999999997542 235789
Q ss_pred cCCCCCCCchhhHHHHHHhhhc--Ccc--------------cccc-cccccccccccceeeecCCccEEEEecceeeccc
Q 006117 111 NFDDPRLTDYDTLLENIRGLKE--GKA--------------VQVP-IYDFKSSSRIGYRTLEVPSSRIVIIEGIYALSEK 173 (660)
Q Consensus 111 vfq~p~l~d~~tl~e~L~~L~~--Gk~--------------I~~P-iyD~s~~~rs~~~~~~v~~a~VVIVEGilaL~de 173 (660)
++|++.+++..++.+++..... |.. +... ..+...+..++++++++..+..++.+..+++.||
T Consensus 1008 ~pQ~~~L~~~LTV~E~L~f~~~lkg~~~~~~~~~v~~lL~~vgL~~~~~~~~~~LSGGqKQRLsLArALi~~PkVLLLDE 1087 (2272)
T TIGR01257 1008 CPQHNILFHHLTVAEHILFYAQLKGRSWEEAQLEMEAMLEDTGLHHKRNEEAQDLSGGMQRKLSVAIAFVGDAKVVVLDE 1087 (2272)
T ss_pred EecCCcCCCCCCHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCchhhcCChhhCCHHHHHHHHHHHHHHcCCCEEEEEC
Confidence 9999999999999999865321 110 1111 1233345566778888888889999999999999
Q ss_pred ccCCCCEEEEEEcChhHHHHHHHHHHHHHhCCCH
Q 006117 174 LRPLIDLRVSVTGGVHFDLVKRVFRDIQRVGQEP 207 (660)
Q Consensus 174 Lr~llDlkIfVdad~dirLiRRI~RDv~eRGrs~ 207 (660)
+...+|. ...+.++.+.++.+ .|++.
T Consensus 1088 PTSGLDp-------~sr~~l~~lL~~l~-~g~TI 1113 (2272)
T TIGR01257 1088 PTSGVDP-------YSRRSIWDLLLKYR-SGRTI 1113 (2272)
T ss_pred CCcCCCH-------HHHHHHHHHHHHHh-CCCEE
Confidence 9999997 44555555665553 35543
No 355
>COG4148 ModC ABC-type molybdate transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=99.08 E-value=3.5e-11 Score=124.92 Aligned_cols=123 Identities=21% Similarity=0.205 Sum_probs=100.6
Q ss_pred ecceeeccCCcceEEEEECCCCCcHHHHHHHHHHhC-CCceEEEecCccc-----------ccccccccCCCCCCCchhh
Q 006117 55 ACQLLAQKNHGIILVGVAGPSGAGKTVFTEKVLNFM-PSIAVITMDNYND-----------SSRIIDGNFDDPRLTDYDT 122 (660)
Q Consensus 55 ~Isl~i~~ge~~~IIGI~GpSGSGKSTLak~L~~lL-p~~g~I~lDg~~~-----------~~~~i~~vfq~p~l~d~~t 122 (660)
+++|..+..+ +.+|-|+|||||||++++|+++. |+.|.|.++|.-. ..+.++|+||+..+|++.+
T Consensus 16 ~a~~~~p~~G---vTAlFG~SGsGKTslin~IaGL~rPdeG~I~lngr~L~Ds~k~i~lp~~~RriGYVFQDARLFpH~t 92 (352)
T COG4148 16 DANFTLPARG---ITALFGPSGSGKTSLINMIAGLTRPDEGRIELNGRVLVDAEKGIFLPPEKRRIGYVFQDARLFPHYT 92 (352)
T ss_pred EEeccCCCCc---eEEEecCCCCChhhHHHHHhccCCccccEEEECCEEeecccCCcccChhhheeeeEeeccccccceE
Confidence 5667777767 99999999999999999999999 9999999999632 2267999999999999999
Q ss_pred HHHHHHhhhcCc-c------c----ccccccccccccccceeeecCCccEEEEecceeecccccCCCCE
Q 006117 123 LLENIRGLKEGK-A------V----QVPIYDFKSSSRIGYRTLEVPSSRIVIIEGIYALSEKLRPLIDL 180 (660)
Q Consensus 123 l~e~L~~L~~Gk-~------I----~~PiyD~s~~~rs~~~~~~v~~a~VVIVEGilaL~deLr~llDl 180 (660)
++.||..-.... . + --|..+....+.+++++++++..+.++-.+-+++.||+...+|.
T Consensus 93 VrgNL~YG~~~~~~~~fd~iv~lLGI~hLL~R~P~~LSGGEkQRVAIGRALLt~P~LLLmDEPLaSLD~ 161 (352)
T COG4148 93 VRGNLRYGMWKSMRAQFDQLVALLGIEHLLDRYPGTLSGGEKQRVAIGRALLTAPELLLMDEPLASLDL 161 (352)
T ss_pred EecchhhhhcccchHhHHHHHHHhCcHHHHhhCCCccCcchhhHHHHHHHHhcCCCeeeecCchhhccc
Confidence 999987533211 0 0 11445666667788899999999999999999999999998886
No 356
>PRK10938 putative molybdenum transport ATP-binding protein ModF; Provisional
Probab=99.08 E-value=1.2e-10 Score=130.65 Aligned_cols=139 Identities=11% Similarity=-0.005 Sum_probs=98.1
Q ss_pred ccceeeeecCceEEEEecceeeccCCcceEEEEECCCCCcHHHHHHHHHHhCC--CceEEEecCcccc--------cccc
Q 006117 39 IEDTLSFEKGFFIVIRACQLLAQKNHGIILVGVAGPSGAGKTVFTEKVLNFMP--SIAVITMDNYNDS--------SRII 108 (660)
Q Consensus 39 ~~~~ls~~~g~~~vL~~Isl~i~~ge~~~IIGI~GpSGSGKSTLak~L~~lLp--~~g~I~lDg~~~~--------~~~i 108 (660)
..+++++.++...++++++|.+++|+ ++||+||||||||||+++|++.+| ..|.|.++|.... .+.+
T Consensus 262 ~~~~l~~~~~~~~il~~vsl~i~~Ge---~~~i~G~NGsGKSTLl~~l~G~~~~~~~G~i~~~g~~~~~~~~~~~~~~~i 338 (490)
T PRK10938 262 VLNNGVVSYNDRPILHNLSWQVNPGE---HWQIVGPNGAGKSTLLSLITGDHPQGYSNDLTLFGRRRGSGETIWDIKKHI 338 (490)
T ss_pred EEeceEEEECCeeEEeeceEEEcCCC---EEEEECCCCCCHHHHHHHHcCCCCcccCCeEEEecccCCCCCCHHHHHhhc
Confidence 34555566666779999999999999 999999999999999999999875 4899999885321 1347
Q ss_pred cccCCCCCCCch--hhHHHHHHhh-h------cC--c-----------ccccc--cccccccccccceeeecCCccEEEE
Q 006117 109 DGNFDDPRLTDY--DTLLENIRGL-K------EG--K-----------AVQVP--IYDFKSSSRIGYRTLEVPSSRIVII 164 (660)
Q Consensus 109 ~~vfq~p~l~d~--~tl~e~L~~L-~------~G--k-----------~I~~P--iyD~s~~~rs~~~~~~v~~a~VVIV 164 (660)
++++|++.++.. .++.+++... . .. . .+..+ ..+......++++.+++..+..++.
T Consensus 339 ~~v~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgGq~qrv~la~al~~ 418 (490)
T PRK10938 339 GYVSSSLHLDYRVSTSVRNVILSGFFDSIGIYQAVSDRQQKLAQQWLDILGIDKRTADAPFHSLSWGQQRLALIVRALVK 418 (490)
T ss_pred eEECHHHHhhcccCCcHHHHHHhccccccccccCCCHHHHHHHHHHHHHcCCchhhccCchhhCCHHHHHHHHHHHHHhc
Confidence 788887654322 2344433210 0 00 0 01111 1233334566678888888899999
Q ss_pred ecceeecccccCCCCE
Q 006117 165 EGIYALSEKLRPLIDL 180 (660)
Q Consensus 165 EGilaL~deLr~llDl 180 (660)
++.+++.||+...+|.
T Consensus 419 ~p~lllLDEPt~gLD~ 434 (490)
T PRK10938 419 HPTLLILDEPLQGLDP 434 (490)
T ss_pred CCCEEEEcCccccCCH
Confidence 9999999999999997
No 357
>COG4136 ABC-type uncharacterized transport system, ATPase component [General function prediction only]
Probab=99.07 E-value=3.8e-11 Score=115.06 Aligned_cols=138 Identities=16% Similarity=0.148 Sum_probs=108.9
Q ss_pred cceeeeecCceEEEEecceeeccCCcceEEEEECCCCCcHHHHHHHHHHhC-C---CceEEEecCcccc-----cccccc
Q 006117 40 EDTLSFEKGFFIVIRACQLLAQKNHGIILVGVAGPSGAGKTVFTEKVLNFM-P---SIAVITMDNYNDS-----SRIIDG 110 (660)
Q Consensus 40 ~~~ls~~~g~~~vL~~Isl~i~~ge~~~IIGI~GpSGSGKSTLak~L~~lL-p---~~g~I~lDg~~~~-----~~~i~~ 110 (660)
.+.++...+....|-++++.+.+|+ |+.|.||||||||||+..+.+.+ + -.|.+.+++.... .+.+++
T Consensus 5 l~nvsl~l~g~cLLa~~n~Tia~Ge---ivtlMGPSGcGKSTLls~~~G~La~~F~~~G~~~l~~~~l~~lPa~qRq~Gi 81 (213)
T COG4136 5 LKNVSLRLPGSCLLANVNFTIAKGE---IVTLMGPSGCGKSTLLSWMIGALAGQFSCTGELWLNEQRLDMLPAAQRQIGI 81 (213)
T ss_pred eeeeeecCCCceEEEeeeEEecCCc---EEEEECCCCccHHHHHHHHHhhcccCcceeeEEEECCeeccccchhhhheee
Confidence 3455566677788999999999999 99999999999999999999998 3 3688999987543 367899
Q ss_pred cCCCCCCCchhhHHHHHHhhh----cCcc-----------c-ccccccccccccccceeeecCCccEEEEecceeecccc
Q 006117 111 NFDDPRLTDYDTLLENIRGLK----EGKA-----------V-QVPIYDFKSSSRIGYRTLEVPSSRIVIIEGIYALSEKL 174 (660)
Q Consensus 111 vfq~p~l~d~~tl~e~L~~L~----~Gk~-----------I-~~PiyD~s~~~rs~~~~~~v~~a~VVIVEGilaL~deL 174 (660)
.||++-+|+...+.+|+..-. +|+. + ..-.++....+.++++..++..-++++-++.+++.||+
T Consensus 82 LFQD~lLFphlsVg~Nl~fAlp~~~KG~aRr~~a~aAL~~~gL~g~f~~dP~tlSGGQrARvaL~R~Lla~Pk~lLLDEP 161 (213)
T COG4136 82 LFQDALLFPHLSVGQNLLFALPATLKGNARRNAANAALERSGLDGAFHQDPATLSGGQRARVALLRALLAQPKALLLDEP 161 (213)
T ss_pred eecccccccccccccceEEecCcccccHHHHhhHHHHHHHhccchhhhcChhhcCcchHHHHHHHHHHHhCcceeeeCCc
Confidence 999999999999999975321 1211 1 11234555556778888888888999999999999999
Q ss_pred cCCCCE
Q 006117 175 RPLIDL 180 (660)
Q Consensus 175 r~llDl 180 (660)
+..+|.
T Consensus 162 FS~LD~ 167 (213)
T COG4136 162 FSRLDV 167 (213)
T ss_pred hhHHHH
Confidence 888875
No 358
>cd03237 ABC_RNaseL_inhibitor_domain2 The ATPase domain 2 of RNase L inhibitor. The ABC ATPase, RNase L inhibitor (RLI), is a key enzyme in ribosomal biogenesis, formation of translation preinitiation complexes, and assembly of HIV capsids. RLI's are not transport proteins and thus cluster with a group of soluble proteins that lack the transmembrane components commonly found in other members of the family. Structurally, RLI's have an N-terminal Fe-S domain and two nucleotide-binding domains which are arranged to form two composite active sites in their interface cleft. RLI is one of the most conserved enzymes between archaea and eukaryotes with a sequence identity of more than 48%. The high degree of evolutionary conservation suggests that RLI performs a central role in archaeal and eukaryotic physiology.
Probab=99.07 E-value=1.2e-10 Score=120.06 Aligned_cols=119 Identities=15% Similarity=0.199 Sum_probs=88.5
Q ss_pred EecceeeccCCcceEEEEECCCCCcHHHHHHHHHHhC-CCceEEEecCcccccccccccCCCCCCCchhhHHHHHHhhhc
Q 006117 54 RACQLLAQKNHGIILVGVAGPSGAGKTVFTEKVLNFM-PSIAVITMDNYNDSSRIIDGNFDDPRLTDYDTLLENIRGLKE 132 (660)
Q Consensus 54 ~~Isl~i~~ge~~~IIGI~GpSGSGKSTLak~L~~lL-p~~g~I~lDg~~~~~~~i~~vfq~p~l~d~~tl~e~L~~L~~ 132 (660)
+..++.+.+|+ ++||+|+||||||||+++|++.+ |..|.|.+++. .+++++|++..+...++.+++.....
T Consensus 16 ~~~~~~i~~Ge---~~~i~G~NGsGKSTLlk~L~G~~~p~~G~i~~~g~-----~i~~~~q~~~~~~~~tv~e~l~~~~~ 87 (246)
T cd03237 16 EVEGGSISESE---VIGILGPNGIGKTTFIKMLAGVLKPDEGDIEIELD-----TVSYKPQYIKADYEGTVRDLLSSITK 87 (246)
T ss_pred EEecCCcCCCC---EEEEECCCCCCHHHHHHHHhCCCcCCCCeEEECCc-----eEEEecccccCCCCCCHHHHHHHHhh
Confidence 33344445788 99999999999999999999998 78999999874 46778888776666778887753211
Q ss_pred C--c----------ccccc-cccccccccccceeeecCCccEEEEecceeecccccCCCCE
Q 006117 133 G--K----------AVQVP-IYDFKSSSRIGYRTLEVPSSRIVIIEGIYALSEKLRPLIDL 180 (660)
Q Consensus 133 G--k----------~I~~P-iyD~s~~~rs~~~~~~v~~a~VVIVEGilaL~deLr~llDl 180 (660)
. . ....+ ..+...+..++++.+++..+..++.++.+++.||+...+|.
T Consensus 88 ~~~~~~~~~~~~l~~l~l~~~~~~~~~~LSgGe~qrv~iaraL~~~p~llllDEPt~~LD~ 148 (246)
T cd03237 88 DFYTHPYFKTEIAKPLQIEQILDREVPELSGGELQRVAIAACLSKDADIYLLDEPSAYLDV 148 (246)
T ss_pred hccccHHHHHHHHHHcCCHHHhhCChhhCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCH
Confidence 0 0 01111 12334455667788888888999999999999999999997
No 359
>cd00267 ABC_ATPase ABC (ATP-binding cassette) transporter nucleotide-binding domain; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.07 E-value=1.9e-10 Score=109.57 Aligned_cols=101 Identities=21% Similarity=0.292 Sum_probs=76.5
Q ss_pred eeeecCceEEEEecceeeccCCcceEEEEECCCCCcHHHHHHHHHHhC-CCceEEEecCccccc-------ccccccCCC
Q 006117 43 LSFEKGFFIVIRACQLLAQKNHGIILVGVAGPSGAGKTVFTEKVLNFM-PSIAVITMDNYNDSS-------RIIDGNFDD 114 (660)
Q Consensus 43 ls~~~g~~~vL~~Isl~i~~ge~~~IIGI~GpSGSGKSTLak~L~~lL-p~~g~I~lDg~~~~~-------~~i~~vfq~ 114 (660)
+++.+....++++++|.+++|+ +++|+|+||||||||+++|++.+ +..|.|.+++..... ..+++++|
T Consensus 5 ~~~~~~~~~~l~~~~~~i~~g~---~~~i~G~nGsGKStll~~l~g~~~~~~G~i~~~~~~~~~~~~~~~~~~i~~~~q- 80 (157)
T cd00267 5 LSFRYGGRTALDNVSLTLKAGE---IVALVGPNGSGKSTLLRAIAGLLKPTSGEILIDGKDIAKLPLEELRRRIGYVPQ- 80 (157)
T ss_pred EEEEeCCeeeEeeeEEEEcCCC---EEEEECCCCCCHHHHHHHHhCCCCCCccEEEECCEEcccCCHHHHHhceEEEee-
Confidence 3444444579999999999999 99999999999999999999998 789999999864321 12333333
Q ss_pred CCCCchhhHHHHHHhhhcCcccccccccccccccccceeeecCCccEEEEecceeecccccCCCCE
Q 006117 115 PRLTDYDTLLENIRGLKEGKAVQVPIYDFKSSSRIGYRTLEVPSSRIVIIEGIYALSEKLRPLIDL 180 (660)
Q Consensus 115 p~l~d~~tl~e~L~~L~~Gk~I~~PiyD~s~~~rs~~~~~~v~~a~VVIVEGilaL~deLr~llDl 180 (660)
.++++..++..+..++.++.+++.||+...+|.
T Consensus 81 ---------------------------------lS~G~~~r~~l~~~l~~~~~i~ilDEp~~~lD~ 113 (157)
T cd00267 81 ---------------------------------LSGGQRQRVALARALLLNPDLLLLDEPTSGLDP 113 (157)
T ss_pred ---------------------------------CCHHHHHHHHHHHHHhcCCCEEEEeCCCcCCCH
Confidence 233344555566667777888888999999996
No 360
>COG4167 SapF ABC-type antimicrobial peptide transport system, ATPase component [Defense mechanisms]
Probab=99.07 E-value=1.3e-10 Score=114.59 Aligned_cols=132 Identities=14% Similarity=0.221 Sum_probs=97.5
Q ss_pred ecCceEEEEecceeeccCCcceEEEEECCCCCcHHHHHHHHHHhC-CCceEEEecCcccc-------cccccccCCCCC-
Q 006117 46 EKGFFIVIRACQLLAQKNHGIILVGVAGPSGAGKTVFTEKVLNFM-PSIAVITMDNYNDS-------SRIIDGNFDDPR- 116 (660)
Q Consensus 46 ~~g~~~vL~~Isl~i~~ge~~~IIGI~GpSGSGKSTLak~L~~lL-p~~g~I~lDg~~~~-------~~~i~~vfq~p~- 116 (660)
.+..+.+++.|||.+++|. .+||+|.||||||||+++|++.+ |.+|.|.++|.... .+.+.++||+|+
T Consensus 22 ~r~~~~AV~~vSFtL~~~Q---TlaiIG~NGSGKSTLakMlaGmi~PTsG~il~n~~~L~~~Dy~~R~k~IRMiFQDpnt 98 (267)
T COG4167 22 RRQTVEAVKPVSFTLREGQ---TLAIIGENGSGKSTLAKMLAGMIEPTSGEILINDHPLHFGDYSFRSKRIRMIFQDPNT 98 (267)
T ss_pred hhhhhhcccceEEEecCCc---EEEEEccCCCcHhHHHHHHhcccCCCCceEEECCccccccchHhhhhheeeeecCCcc
Confidence 3445679999999999999 99999999999999999999999 89999999986432 245778999986
Q ss_pred -CCchhhHHHHHHh-hhcCcc-----------------ccccc-ccccccccccceeeecCCccEEEEecceeecccccC
Q 006117 117 -LTDYDTLLENIRG-LKEGKA-----------------VQVPI-YDFKSSSRIGYRTLEVPSSRIVIIEGIYALSEKLRP 176 (660)
Q Consensus 117 -l~d~~tl~e~L~~-L~~Gk~-----------------I~~Pi-yD~s~~~rs~~~~~~v~~a~VVIVEGilaL~deLr~ 176 (660)
+.+...+.+.|.. |+.... -..|. -++..+....+++++++.++.+|+++..++.|+-..
T Consensus 99 s~NPRl~iGqiLd~PL~l~T~~~~~~R~~~i~~TL~~VGL~Pdhan~~~~~la~~QKQRVaLARALIL~P~iIIaDeAl~ 178 (267)
T COG4167 99 SLNPRLRIGQILDFPLRLNTDLEPEQRRKQIFETLRMVGLLPDHANYYPHMLAPGQKQRVALARALILRPKIIIADEALA 178 (267)
T ss_pred ccChhhhhhhHhcchhhhcccCChHHHHHHHHHHHHHhccCccccccchhhcCchhHHHHHHHHHHhcCCcEEEehhhhh
Confidence 3445555554432 211100 11232 234455555667888899999999999999888777
Q ss_pred CCCE
Q 006117 177 LIDL 180 (660)
Q Consensus 177 llDl 180 (660)
.+|+
T Consensus 179 ~LD~ 182 (267)
T COG4167 179 SLDM 182 (267)
T ss_pred hccH
Confidence 7776
No 361
>PTZ00451 dephospho-CoA kinase; Provisional
Probab=99.07 E-value=2.4e-10 Score=118.09 Aligned_cols=168 Identities=20% Similarity=0.156 Sum_probs=102.8
Q ss_pred ceEEEEECCCCCcHHHHHHHHHHhCCCceEEEecCccc----cc----cc----cc-ccCCCCCCCchhhHHHHHHh---
Q 006117 66 IILVGVAGPSGAGKTVFTEKVLNFMPSIAVITMDNYND----SS----RI----ID-GNFDDPRLTDYDTLLENIRG--- 129 (660)
Q Consensus 66 ~~IIGI~GpSGSGKSTLak~L~~lLp~~g~I~lDg~~~----~~----~~----i~-~vfq~p~l~d~~tl~e~L~~--- 129 (660)
+++|||+|+.||||||+++.|.+.+ +.-+|..|.... .. .. .+ .+....+..|...+.+.+..
T Consensus 1 M~iIGlTGgIgSGKStVs~~L~~~~-G~~viDaD~iar~l~~~~~~~~~~i~~~Fg~~i~~~dg~idR~~L~~~VF~d~~ 79 (244)
T PTZ00451 1 MILIGLTGGIACGKSTVSRILREEH-HIEVIDADLVVRELQAPNMACTRKIAARWPLCVHPETGELNRAELGKIIFSDAQ 79 (244)
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHc-CCeEEehHHHHHHHHcCChHHHHHHHHHhchhhcCCCCcCCHHHHHHHHhCCHH
Confidence 3689999999999999999999864 445677665311 00 00 11 12222244565555555432
Q ss_pred -hhcCccccccccccccccccc-------ceeeecCCccEEEEecceeecccc-cCCCCEEEEEEcChhHHHHHHHHHHH
Q 006117 130 -LKEGKAVQVPIYDFKSSSRIG-------YRTLEVPSSRIVIIEGIYALSEKL-RPLIDLRVSVTGGVHFDLVKRVFRDI 200 (660)
Q Consensus 130 -L~~Gk~I~~PiyD~s~~~rs~-------~~~~~v~~a~VVIVEGilaL~deL-r~llDlkIfVdad~dirLiRRI~RDv 200 (660)
++.-+.+.+|..-........ ..........++++|.++++...+ ...||..|+|++|.++++.|-+.
T Consensus 80 ~~~~Le~i~HP~V~~~i~~~i~~~~~~~~~~~~~~~~~~~vv~evPLL~E~~~~~~~~D~iv~V~a~~e~ri~RL~~--- 156 (244)
T PTZ00451 80 ARRALGRIMNPPIFRAILKRIAAAWWEDLWRSGAGSSPLIVVLDAPTLFETKTFTYFVSASVVVSCSEERQIERLRK--- 156 (244)
T ss_pred HHHHHHHHhCHHHHHHHHHHHHHhhhhhhhhhhhccCCCEEEEEechhhccCchhhcCCeEEEEECCHHHHHHHHHH---
Confidence 222344555643222111110 000011223589999999998764 46889999999998876655333
Q ss_pred HHhCCCHHHHHHHHHhccccchhhcccCCcCcCcEEEeCC--CCCC
Q 006117 201 QRVGQEPEEIIHQISETVYPMYKAFIEPDLQTAHIKIINK--FNPF 244 (660)
Q Consensus 201 ~eRGrs~E~Vl~qy~~~v~P~~~~fIeP~k~~ADiII~N~--~~p~ 244 (660)
++|.+.+++.+++.. ..|. +..+..||+||.|+ ++++
T Consensus 157 -R~g~s~eea~~Ri~~-Q~~~-----~ek~~~aD~VI~N~~~g~~~ 195 (244)
T PTZ00451 157 -RNGFSKEEALQRIGS-QMPL-----EEKRRLADYIIENDSADDLD 195 (244)
T ss_pred -cCCCCHHHHHHHHHh-CCCH-----HHHHHhCCEEEECCCCCCHH
Confidence 358899999888855 3332 33468899999998 7663
No 362
>PRK10636 putative ABC transporter ATP-binding protein; Provisional
Probab=99.06 E-value=9.7e-11 Score=135.83 Aligned_cols=138 Identities=14% Similarity=0.139 Sum_probs=92.2
Q ss_pred cceeeeecCceEEEEecceeeccCCcceEEEEECCCCCcHHHHHHHHHHhC-CCceEEEecCccc----c-------ccc
Q 006117 40 EDTLSFEKGFFIVIRACQLLAQKNHGIILVGVAGPSGAGKTVFTEKVLNFM-PSIAVITMDNYND----S-------SRI 107 (660)
Q Consensus 40 ~~~ls~~~g~~~vL~~Isl~i~~ge~~~IIGI~GpSGSGKSTLak~L~~lL-p~~g~I~lDg~~~----~-------~~~ 107 (660)
.+++++.+|...+++++||.+.+|+ ++||+|+||||||||+++|++.+ |+.|.|.+++... . ...
T Consensus 4 i~nls~~~g~~~~l~~vs~~i~~Ge---~v~LvG~NGsGKSTLLkiL~G~~~pd~G~I~~~~~~~i~~~~q~~~~~~~~~ 80 (638)
T PRK10636 4 FSSLQIRRGVRVLLDNATATINPGQ---KVGLVGKNGCGKSTLLALLKNEISADGGSYTFPGNWQLAWVNQETPALPQPA 80 (638)
T ss_pred EEEEEEEeCCceeecCcEEEECCCC---EEEEECCCCCCHHHHHHHHhCCCCCCCceEEecCCCEEEEEecCCCCCCCCH
Confidence 3566677788889999999999999 99999999999999999999997 8899999876420 0 011
Q ss_pred ccccCCCCCCCchhhHH-----------------------------HHHHhhhcCcccccccccccccccccceeeecCC
Q 006117 108 IDGNFDDPRLTDYDTLL-----------------------------ENIRGLKEGKAVQVPIYDFKSSSRIGYRTLEVPS 158 (660)
Q Consensus 108 i~~vfq~p~l~d~~tl~-----------------------------e~L~~L~~Gk~I~~PiyD~s~~~rs~~~~~~v~~ 158 (660)
++++++.+..+...+.. +.+..+..+-.+.....+......++++..++..
T Consensus 81 ~~~v~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~lgl~~~~~~~~~~~LSgGerqRv~L 160 (638)
T PRK10636 81 LEYVIDGDREYRQLEAQLHDANERNDGHAIATIHGKLDAIDAWTIRSRAASLLHGLGFSNEQLERPVSDFSGGWRMRLNL 160 (638)
T ss_pred HHHHHHhhHHHHHHHHHHHHHhccCCHHHHHHHHHHHHhcCCcchHHHHHHHHHhCCCCchhhcCchhhcCHHHHHHHHH
Confidence 22333221111110000 0000000000011112344445667788888999
Q ss_pred ccEEEEecceeecccccCCCCE
Q 006117 159 SRIVIIEGIYALSEKLRPLIDL 180 (660)
Q Consensus 159 a~VVIVEGilaL~deLr~llDl 180 (660)
+.+++.++.+++.|||.+.+|.
T Consensus 161 A~aL~~~P~lLLLDEPtn~LD~ 182 (638)
T PRK10636 161 AQALICRSDLLLLDEPTNHLDL 182 (638)
T ss_pred HHHHccCCCEEEEcCCCCcCCH
Confidence 9999999999999999999997
No 363
>PTZ00265 multidrug resistance protein (mdr1); Provisional
Probab=99.06 E-value=1.2e-10 Score=145.78 Aligned_cols=163 Identities=17% Similarity=0.204 Sum_probs=115.8
Q ss_pred cceeeeecCc---eEEEEecceeeccCCcceEEEEECCCCCcHHHHHHHHHHhC-CCceEEEec-Ccccc-------ccc
Q 006117 40 EDTLSFEKGF---FIVIRACQLLAQKNHGIILVGVAGPSGAGKTVFTEKVLNFM-PSIAVITMD-NYNDS-------SRI 107 (660)
Q Consensus 40 ~~~ls~~~g~---~~vL~~Isl~i~~ge~~~IIGI~GpSGSGKSTLak~L~~lL-p~~g~I~lD-g~~~~-------~~~ 107 (660)
.++++|.++. ..+|++++|.+++|+ ++||+|+||||||||+++|++++ |..|.|.++ +.... .+.
T Consensus 385 ~~nVsf~Y~~~~~~~vL~~isl~i~~Ge---~vaIvG~SGsGKSTLl~lL~gl~~p~~G~I~i~~g~~i~~~~~~~lr~~ 461 (1466)
T PTZ00265 385 FKNVRFHYDTRKDVEIYKDLNFTLTEGK---TYAFVGESGCGKSTILKLIERLYDPTEGDIIINDSHNLKDINLKWWRSK 461 (1466)
T ss_pred EEEEEEEcCCCCCCceeccceEEEcCCC---EEEEECCCCCCHHHHHHHHHHhccCCCCeEEEeCCcchhhCCHHHHHHh
Confidence 3555666543 469999999999999 99999999999999999999998 899999994 44321 245
Q ss_pred ccccCCCCCCCchhhHHHHHHhhhcCc-----------------------------------------------------
Q 006117 108 IDGNFDDPRLTDYDTLLENIRGLKEGK----------------------------------------------------- 134 (660)
Q Consensus 108 i~~vfq~p~l~d~~tl~e~L~~L~~Gk----------------------------------------------------- 134 (660)
+++++|+|.+|+ .++.+|+..-....
T Consensus 462 Ig~V~Q~~~LF~-~TI~eNI~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~ 540 (1466)
T PTZ00265 462 IGVVSQDPLLFS-NSIKNNIKYSLYSLKDLEALSNYYNEDGNDSQENKNKRNSCRAKCAGDLNDMSNTTDSNELIEMRKN 540 (1466)
T ss_pred ccEecccccchh-ccHHHHHHhcCCCccccchhccccccccccccccccccccccccccchhhhcccccchhhhhhcccc
Confidence 889999999997 59999987521000
Q ss_pred --c------------c-------ccc-ccc----ccccccccceeeecCCccEEEEecceeecccccCCCCEEEEEEcCh
Q 006117 135 --A------------V-------QVP-IYD----FKSSSRIGYRTLEVPSSRIVIIEGIYALSEKLRPLIDLRVSVTGGV 188 (660)
Q Consensus 135 --~------------I-------~~P-iyD----~s~~~rs~~~~~~v~~a~VVIVEGilaL~deLr~llDlkIfVdad~ 188 (660)
. . ..| .|+ ......++++.+++..++.++-++.+++.||+...+|. .
T Consensus 541 ~~~~~~~~v~~a~~~~~l~~~i~~lp~g~dT~vg~~g~~LSGGQkQRiaIARAll~~P~ILlLDEpTSaLD~-------~ 613 (1466)
T PTZ00265 541 YQTIKDSEVVDVSKKVLIHDFVSALPDKYETLVGSNASKLSGGQKQRISIARAIIRNPKILILDEATSSLDN-------K 613 (1466)
T ss_pred cccCCHHHHHHHHHHhCcHHHHHhCccccCceeCCCCCcCCHHHHHHHHHHHHHhcCCCEEEEeCcccccCH-------H
Confidence 0 0 011 011 11223556788889999999999999999999999997 3
Q ss_pred hHHHHHHHHHHHHH-hCCCHHHHHHH
Q 006117 189 HFDLVKRVFRDIQR-VGQEPEEIIHQ 213 (660)
Q Consensus 189 dirLiRRI~RDv~e-RGrs~E~Vl~q 213 (660)
....+....++... +|++.--+.|+
T Consensus 614 se~~i~~~L~~~~~~~g~TvIiIsHr 639 (1466)
T PTZ00265 614 SEYLVQKTINNLKGNENRITIIIAHR 639 (1466)
T ss_pred HHHHHHHHHHHHhhcCCCEEEEEeCC
Confidence 33444444555443 46665433333
No 364
>COG0488 Uup ATPase components of ABC transporters with duplicated ATPase domains [General function prediction only]
Probab=99.06 E-value=2.2e-10 Score=129.87 Aligned_cols=136 Identities=21% Similarity=0.180 Sum_probs=103.7
Q ss_pred eccceeeeecCceEEEEecceeeccCCcceEEEEECCCCCcHHHHHHHHHHhC-CCceEEEecCcccccccccccCCCCC
Q 006117 38 PIEDTLSFEKGFFIVIRACQLLAQKNHGIILVGVAGPSGAGKTVFTEKVLNFM-PSIAVITMDNYNDSSRIIDGNFDDPR 116 (660)
Q Consensus 38 ~~~~~ls~~~g~~~vL~~Isl~i~~ge~~~IIGI~GpSGSGKSTLak~L~~lL-p~~g~I~lDg~~~~~~~i~~vfq~p~ 116 (660)
....++++.+|...+++++++.+.+|+ .|||+|+||||||||+++|++.+ |+.|.|..+.- ..+++..|++.
T Consensus 4 i~~~~ls~~~g~~~l~~~~~l~~~~G~---riGLvG~NGaGKSTLLkilaG~~~~~~G~i~~~~~----~~v~~l~Q~~~ 76 (530)
T COG0488 4 ITLENLSLAYGDRPLLENVSLTLNPGE---RIGLVGRNGAGKSTLLKILAGELEPDSGEVTRPKG----LRVGYLSQEPP 76 (530)
T ss_pred EEEeeeEEeeCCceeecCCcceeCCCC---EEEEECCCCCCHHHHHHHHcCCCcCCCCeEeecCC----ceEEEeCCCCC
Confidence 344667777799999999999999999 99999999999999999999998 89999988753 13667777777
Q ss_pred CCchhhHHHHHHhhhc-----------------------------------C-----------ccccccccccccccccc
Q 006117 117 LTDYDTLLENIRGLKE-----------------------------------G-----------KAVQVPIYDFKSSSRIG 150 (660)
Q Consensus 117 l~d~~tl~e~L~~L~~-----------------------------------G-----------k~I~~PiyD~s~~~rs~ 150 (660)
+.+..++.+.+..-.. + .....+..+......++
T Consensus 77 ~~~~~tv~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~e~~~~~~L~gLg~~~~~~~~~~LSG 156 (530)
T COG0488 77 LDPEKTVLDYVIEGFGELRELLAELEEAYALLADPDDELLAELEALLEELDGWTLEARAEEALLGLGFPDEDRPVSSLSG 156 (530)
T ss_pred cCCCccHHHHHHhhhHHHHHHHHHHHHHHHhcccchhHHHHHHHHHHHhhcccchHHHHHHHHhcCCCCcccCchhhcCH
Confidence 7765555543321000 0 00111222445566778
Q ss_pred ceeeecCCccEEEEecceeecccccCCCCE
Q 006117 151 YRTLEVPSSRIVIIEGIYALSEKLRPLIDL 180 (660)
Q Consensus 151 ~~~~~v~~a~VVIVEGilaL~deLr~llDl 180 (660)
++..++..+++++-++-+++.|||.+++|+
T Consensus 157 G~r~Rv~LA~aL~~~pDlLLLDEPTNHLD~ 186 (530)
T COG0488 157 GWRRRVALARALLEEPDLLLLDEPTNHLDL 186 (530)
T ss_pred HHHHHHHHHHHHhcCCCEEEEcCCCcccCH
Confidence 888899999999999999999999999996
No 365
>TIGR01192 chvA glucan exporter ATP-binding protein. This model describes glucan exporter ATP binding protein in bacteria. It belongs to the larger ABC transporter superfamily with the characteristic ATP binding motif. The In general, this protein is in some ways implicated in osmoregulation and suggested to participate in the export of glucan from the cytoplasm to periplasm. The cyclic beta-1,2-glucan in the bactrerial periplasmic space is suggested to confer the property of high osmolority. It has also been demonstrated that mutants in this loci have lost functions of virulence and motility. It is unclear as to how virulence and osmoadaptaion are related.
Probab=99.06 E-value=1.2e-10 Score=133.68 Aligned_cols=137 Identities=21% Similarity=0.313 Sum_probs=104.8
Q ss_pred cceeeeecCc-eEEEEecceeeccCCcceEEEEECCCCCcHHHHHHHHHHhC-CCceEEEecCccccc-------ccccc
Q 006117 40 EDTLSFEKGF-FIVIRACQLLAQKNHGIILVGVAGPSGAGKTVFTEKVLNFM-PSIAVITMDNYNDSS-------RIIDG 110 (660)
Q Consensus 40 ~~~ls~~~g~-~~vL~~Isl~i~~ge~~~IIGI~GpSGSGKSTLak~L~~lL-p~~g~I~lDg~~~~~-------~~i~~ 110 (660)
.+++++.++. ..++++++|.+++|+ .++|+|+||||||||++.|++.+ |..|.|.+||.+... +.+++
T Consensus 337 ~~~v~~~y~~~~~~l~~i~~~i~~G~---~~~ivG~sGsGKSTL~~ll~g~~~~~~G~i~~~g~~~~~~~~~~~~~~i~~ 413 (585)
T TIGR01192 337 FRHITFEFANSSQGVFDVSFEAKAGQ---TVAIVGPTGAGKTTLINLLQRVYDPTVGQILIDGIDINTVTRESLRKSIAT 413 (585)
T ss_pred EEEEEEECCCCCccccceeEEEcCCC---EEEEECCCCCCHHHHHHHHccCCCCCCCEEEECCEEhhhCCHHHHHhheEE
Confidence 3556666543 468999999999999 99999999999999999999998 789999999875321 45789
Q ss_pred cCCCCCCCchhhHHHHHHhhhcC---cc-------------c-ccc-ccccc----ccccccceeeecCCccEEEEecce
Q 006117 111 NFDDPRLTDYDTLLENIRGLKEG---KA-------------V-QVP-IYDFK----SSSRIGYRTLEVPSSRIVIIEGIY 168 (660)
Q Consensus 111 vfq~p~l~d~~tl~e~L~~L~~G---k~-------------I-~~P-iyD~s----~~~rs~~~~~~v~~a~VVIVEGil 168 (660)
++|++.+|+ .++++|+...... +. + ..| .++.. ....++++.+++..++.++-++.+
T Consensus 414 v~q~~~lf~-~ti~~Ni~~~~~~~~~~~~~~a~~~~~~~~~i~~l~~g~~t~~~~~~~~LSgGq~qrl~lARall~~p~i 492 (585)
T TIGR01192 414 VFQDAGLFN-RSIRENIRLGREGATDEEVYEAAKAAAAHDFILKRSNGYDTLVGERGNRLSGGERQRLAIARAILKNAPI 492 (585)
T ss_pred EccCCccCc-ccHHHHHhcCCCCCCHHHHHHHHHHhCcHHHHHhccccccchhcCCCCCCCHHHHHHHHHHHHHhcCCCE
Confidence 999999887 6899998643211 00 1 112 12221 123456788888999999999999
Q ss_pred eecccccCCCCE
Q 006117 169 ALSEKLRPLIDL 180 (660)
Q Consensus 169 aL~deLr~llDl 180 (660)
++.||+...+|.
T Consensus 493 lilDEpts~LD~ 504 (585)
T TIGR01192 493 LVLDEATSALDV 504 (585)
T ss_pred EEEECCccCCCH
Confidence 999999999997
No 366
>COG1134 TagH ABC-type polysaccharide/polyol phosphate transport system, ATPase component [Carbohydrate transport and metabolism / Cell envelope biogenesis, outer membrane]
Probab=99.05 E-value=1.8e-10 Score=117.83 Aligned_cols=162 Identities=20% Similarity=0.291 Sum_probs=99.4
Q ss_pred ecCceEEEEecceeeccCCcceEEEEECCCCCcHHHHHHHHHHhC-CCceEEEecCcccccccccccCCCCCCCchhhHH
Q 006117 46 EKGFFIVIRACQLLAQKNHGIILVGVAGPSGAGKTVFTEKVLNFM-PSIAVITMDNYNDSSRIIDGNFDDPRLTDYDTLL 124 (660)
Q Consensus 46 ~~g~~~vL~~Isl~i~~ge~~~IIGI~GpSGSGKSTLak~L~~lL-p~~g~I~lDg~~~~~~~i~~vfq~p~l~d~~tl~ 124 (660)
....+++|++|||.+.+|+ .|||+|+||||||||++.|++.+ |+.|.|...|.-..--.++.-|+ +..+.+
T Consensus 36 ~~~~~~aL~disf~i~~Ge---~vGiiG~NGaGKSTLlkliaGi~~Pt~G~v~v~G~v~~li~lg~Gf~-----pelTGr 107 (249)
T COG1134 36 KVAEFWALKDISFEIYKGE---RVGIIGHNGAGKSTLLKLIAGIYKPTSGKVKVTGKVAPLIELGAGFD-----PELTGR 107 (249)
T ss_pred CcceEEEecCceEEEeCCC---EEEEECCCCCcHHHHHHHHhCccCCCCceEEEcceEehhhhcccCCC-----cccchH
Confidence 4457899999999999999 99999999999999999999999 89999999986332212222222 112333
Q ss_pred HHHH---------------------hhh-cCccccccccccccccc--ccceeeecCCccEEEEecceeeccc-------
Q 006117 125 ENIR---------------------GLK-EGKAVQVPIYDFKSSSR--IGYRTLEVPSSRIVIIEGIYALSEK------- 173 (660)
Q Consensus 125 e~L~---------------------~L~-~Gk~I~~PiyD~s~~~r--s~~~~~~v~~a~VVIVEGilaL~de------- 173 (660)
+|+. .+. -|+.+..|+-.++.++. .+......-..+++|+|-.++.-|.
T Consensus 108 eNi~l~~~~~G~~~~ei~~~~~eIieFaELG~fi~~PvktYSSGM~aRLaFsia~~~~pdILllDEvlavGD~~F~~K~~ 187 (249)
T COG1134 108 ENIYLRGLILGLTRKEIDEKVDEIIEFAELGDFIDQPVKTYSSGMYARLAFSVATHVEPDILLLDEVLAVGDAAFQEKCL 187 (249)
T ss_pred HHHHHHHHHhCccHHHHHHHHHHHHHHHHHHHHhhCchhhccHHHHHHHHHhhhhhcCCCEEEEehhhhcCCHHHHHHHH
Confidence 3332 111 25678889888887763 2322222334466666655554431
Q ss_pred --ccCC---CCEEEEEEcChhHHHHHHHHHHHHH--hC-----CCHHHHHHHHHhc
Q 006117 174 --LRPL---IDLRVSVTGGVHFDLVKRVFRDIQR--VG-----QEPEEIIHQISET 217 (660)
Q Consensus 174 --Lr~l---lDlkIfVdad~dirLiRRI~RDv~e--RG-----rs~E~Vl~qy~~~ 217 (660)
+.++ --..|+|. .+...++++.-.... .| -++++++..|...
T Consensus 188 ~rl~e~~~~~~tiv~VS--Hd~~~I~~~Cd~~i~l~~G~i~~~G~~~~vi~~Y~~~ 241 (249)
T COG1134 188 ERLNELVEKNKTIVLVS--HDLGAIKQYCDRAIWLEHGQIRMEGSPEEVIPAYEED 241 (249)
T ss_pred HHHHHHHHcCCEEEEEE--CCHHHHHHhcCeeEEEeCCEEEEcCCHHHHHHHHHHh
Confidence 1111 12334444 334455555544321 22 1678888888554
No 367
>PLN02422 dephospho-CoA kinase
Probab=99.05 E-value=2.4e-10 Score=117.24 Aligned_cols=164 Identities=16% Similarity=0.102 Sum_probs=104.2
Q ss_pred eEEEEECCCCCcHHHHHHHHHHhCCCceEEEecCcccc----c----cc----cc-ccCCCCCCCchhhHHHHHHh----
Q 006117 67 ILVGVAGPSGAGKTVFTEKVLNFMPSIAVITMDNYNDS----S----RI----ID-GNFDDPRLTDYDTLLENIRG---- 129 (660)
Q Consensus 67 ~IIGI~GpSGSGKSTLak~L~~lLp~~g~I~lDg~~~~----~----~~----i~-~vfq~p~l~d~~tl~e~L~~---- 129 (660)
.+|||+|+.||||||+++.|... +...++.|..... . .. .+ -++...+-.|...+.+.+..
T Consensus 2 ~~igltG~igsGKstv~~~l~~~--g~~~idaD~~~~~l~~~g~~~~~~l~~~FG~~il~~dG~idR~~L~~~VF~d~~~ 79 (232)
T PLN02422 2 RVVGLTGGIASGKSTVSNLFKSS--GIPVVDADKVARDVLKKGSGGWKRVVAAFGEDILLPDGEVDREKLGQIVFSDPSK 79 (232)
T ss_pred eEEEEECCCCCCHHHHHHHHHHC--CCeEEehhHHHHHHHHhhHHHHHHHHHHhCHHhcCCCCcCCHHHHHHHHhCCHHH
Confidence 47999999999999999999953 5667777764110 0 01 11 12223344555555555432
Q ss_pred hhcCcccccccccccccccccceeeecCCccEEEEecceeecccccCCCCEEEEEEcChhHHHHHHHHHHHHHhCCCHHH
Q 006117 130 LKEGKAVQVPIYDFKSSSRIGYRTLEVPSSRIVIIEGIYALSEKLRPLIDLRVSVTGGVHFDLVKRVFRDIQRVGQEPEE 209 (660)
Q Consensus 130 L~~Gk~I~~PiyD~s~~~rs~~~~~~v~~a~VVIVEGilaL~deLr~llDlkIfVdad~dirLiRRI~RDv~eRGrs~E~ 209 (660)
++.-+.+.+|........+.. ........++++|.++++...+...||..|+|++|.+++..|-+.| +|.+.++
T Consensus 80 ~~~Le~IlHP~V~~~~~~~~~--~~~~~~~~~vv~eipLL~E~~~~~~~D~vI~V~a~~e~ri~RL~~R----~g~s~ee 153 (232)
T PLN02422 80 RQLLNRLLAPYISSGIFWEIL--KLWLKGCKVIVLDIPLLFETKMDKWTKPVVVVWVDPETQLERLMAR----DGLSEEQ 153 (232)
T ss_pred HHHHHHHhhHHHHHHHHHHHH--HHHhcCCCEEEEEehhhhhcchhhhCCEEEEEECCHHHHHHHHHHc----CCCCHHH
Confidence 222344666644322211110 0011224689999999998888889999999999988866554444 4889988
Q ss_pred HHHHHHhccccchhhcccCCcCcCcEEEeCCCCCC
Q 006117 210 IIHQISETVYPMYKAFIEPDLQTAHIKIINKFNPF 244 (660)
Q Consensus 210 Vl~qy~~~v~P~~~~fIeP~k~~ADiII~N~~~p~ 244 (660)
+..++ +...|.. ...+.||+||.|+++.+
T Consensus 154 a~~Ri-~~Q~~~e-----ek~~~AD~VI~N~gs~e 182 (232)
T PLN02422 154 ARNRI-NAQMPLD-----WKRSKADIVIDNSGSLE 182 (232)
T ss_pred HHHHH-HHcCChh-----HHHhhCCEEEECCCCHH
Confidence 88776 3334432 23688999999987553
No 368
>PRK10636 putative ABC transporter ATP-binding protein; Provisional
Probab=99.05 E-value=2.1e-10 Score=132.99 Aligned_cols=136 Identities=15% Similarity=0.111 Sum_probs=98.7
Q ss_pred eccceeeeecCceEEEEecceeeccCCcceEEEEECCCCCcHHHHHHHHHHhC-CCceEEEecCcccccccccccCCCC-
Q 006117 38 PIEDTLSFEKGFFIVIRACQLLAQKNHGIILVGVAGPSGAGKTVFTEKVLNFM-PSIAVITMDNYNDSSRIIDGNFDDP- 115 (660)
Q Consensus 38 ~~~~~ls~~~g~~~vL~~Isl~i~~ge~~~IIGI~GpSGSGKSTLak~L~~lL-p~~g~I~lDg~~~~~~~i~~vfq~p- 115 (660)
...+++++.++...++++++|.+.+|+ ++||+||||||||||+++|++.+ |+.|.|.+++. ..++|++|++
T Consensus 313 l~~~~l~~~y~~~~il~~isl~i~~Ge---~~~l~G~NGsGKSTLlk~l~G~~~p~~G~i~~~~~----~~igy~~Q~~~ 385 (638)
T PRK10636 313 LKMEKVSAGYGDRIILDSIKLNLVPGS---RIGLLGRNGAGKSTLIKLLAGELAPVSGEIGLAKG----IKLGYFAQHQL 385 (638)
T ss_pred EEEEeeEEEeCCeeeeccceEEECCCC---EEEEECCCCCCHHHHHHHHhCCCCCCCCeEEECCC----EEEEEecCcch
Confidence 334556666677789999999999999 99999999999999999999998 78999998642 2467778764
Q ss_pred -CCCchhhHHHHHHhhhcCc----------ccccc--cccccccccccceeeecCCccEEEEecceeecccccCCCCE
Q 006117 116 -RLTDYDTLLENIRGLKEGK----------AVQVP--IYDFKSSSRIGYRTLEVPSSRIVIIEGIYALSEKLRPLIDL 180 (660)
Q Consensus 116 -~l~d~~tl~e~L~~L~~Gk----------~I~~P--iyD~s~~~rs~~~~~~v~~a~VVIVEGilaL~deLr~llDl 180 (660)
.+....++.+++..+.... ....+ ..+...+..++++..++..+.+++.++.+++.|||.+.+|.
T Consensus 386 ~~l~~~~~~~~~~~~~~~~~~~~~~~~~L~~~~l~~~~~~~~~~~LSgGekqRl~La~~l~~~p~lLlLDEPt~~LD~ 463 (638)
T PRK10636 386 EFLRADESPLQHLARLAPQELEQKLRDYLGGFGFQGDKVTEETRRFSGGEKARLVLALIVWQRPNLLLLDEPTNHLDL 463 (638)
T ss_pred hhCCccchHHHHHHHhCchhhHHHHHHHHHHcCCChhHhcCchhhCCHHHHHHHHHHHHHhcCCCEEEEcCCCCCCCH
Confidence 2333345555443221100 01111 12233455667788888889999999999999999999997
No 369
>COG4987 CydC ABC-type transport system involved in cytochrome bd biosynthesis, fused ATPase and permease components [Energy production and conversion / Posttranslational modification, protein turnover, chaperones]
Probab=99.05 E-value=6.8e-11 Score=131.45 Aligned_cols=169 Identities=17% Similarity=0.149 Sum_probs=119.1
Q ss_pred CCCCCCccCccccchhhhhcc-cCCCceeeeeccceeeeecCc--eEEEEecceeeccCCcceEEEEECCCCCcHHHHHH
Q 006117 8 GADSPRRRPGLLRDQVQLVKK-KDSDRYEIVPIEDTLSFEKGF--FIVIRACQLLAQKNHGIILVGVAGPSGAGKTVFTE 84 (660)
Q Consensus 8 ~~~S~~r~~~ll~~~~~l~~~-~~~~~~ei~~~~~~ls~~~g~--~~vL~~Isl~i~~ge~~~IIGI~GpSGSGKSTLak 84 (660)
..+|-.|.....+++++.... ............++++|.+.. ..+|++++|.+.+|+ -|+|+|+|||||||+++
T Consensus 306 ~~~Sa~Rl~~i~~q~~e~~~~~~~~~~~~~~l~~~~vsF~y~~~~~~~L~~~~l~l~~GE---kvAIlG~SGsGKSTllq 382 (573)
T COG4987 306 VIASARRLNDILDQKPEVTFPDEQTATTGQALELRNVSFTYPGQQTKALKNFNLTLAQGE---KVAILGRSGSGKSTLLQ 382 (573)
T ss_pred HHHHHHHHhhhccCCcccCCCccccCCccceeeeccceeecCCCccchhhccceeecCCC---eEEEECCCCCCHHHHHH
Confidence 345667777777666555444 111111112345566666544 469999999999999 99999999999999999
Q ss_pred HHHHhC-CCceEEEecCccccc-------ccccccCCCCCCCchhhHHHHHHhhhcC----------------ccc-ccc
Q 006117 85 KVLNFM-PSIAVITMDNYNDSS-------RIIDGNFDDPRLTDYDTLLENIRGLKEG----------------KAV-QVP 139 (660)
Q Consensus 85 ~L~~lL-p~~g~I~lDg~~~~~-------~~i~~vfq~p~l~d~~tl~e~L~~L~~G----------------k~I-~~P 139 (660)
.|++.+ |+.|.|.+.|..... ..+.++.|.+.+|+ .++++||.--+.. +-+ ..|
T Consensus 383 Ll~~~~~~~~G~i~~~g~~~~~l~~~~~~e~i~vl~Qr~hlF~-~Tlr~NL~lA~~~AsDEel~~aL~qvgL~~l~~~~p 461 (573)
T COG4987 383 LLAGAWDPQQGSITLNGVEIASLDEQALRETISVLTQRVHLFS-GTLRDNLRLANPDASDEELWAALQQVGLEKLLESAP 461 (573)
T ss_pred HHHhccCCCCCeeeECCcChhhCChhhHHHHHhhhccchHHHH-HHHHHHHhhcCCCCCHHHHHHHHHHcCHHHHHHhCh
Confidence 999998 899999999964321 24667888888876 6888887533221 000 112
Q ss_pred -----cccccccccccceeeecCCccEEEEecceeecccccCCCCE
Q 006117 140 -----IYDFKSSSRIGYRTLEVPSSRIVIIEGIYALSEKLRPLIDL 180 (660)
Q Consensus 140 -----iyD~s~~~rs~~~~~~v~~a~VVIVEGilaL~deLr~llDl 180 (660)
..+..-...++++..++..+++++-+.++.+.||+...+|-
T Consensus 462 ~gl~t~lge~G~~LSGGE~rRLAlAR~LL~dapl~lLDEPTegLD~ 507 (573)
T COG4987 462 DGLNTWLGEGGRRLSGGERRRLALARALLHDAPLWLLDEPTEGLDP 507 (573)
T ss_pred hhhhchhccCCCcCCchHHHHHHHHHHHHcCCCeEEecCCcccCCh
Confidence 12222234567888899999999999999999999999996
No 370
>TIGR01194 cyc_pep_trnsptr cyclic peptide transporter. This model describes cyclic peptide transporter in bacteria. Bacteria have elaborate pathways for the production of toxins and secondary metabolites. Many such compounds, including syringomycin and pyoverdine are synthesized on non-ribosomal templates consisting of a multienzyme complex. On several occasions the proteins of the complex and transporter protein are present on the same operon. Often times these compounds cross the biological membrane by specific transporters. Syringomycin is an amphipathic, cylclic lipodepsipeptide when inserted into host causes formation of channels, permeable to variety of cations. On the other hand, pyoverdine is a cyclic octa-peptidyl dihydroxyquinoline, which is efficient in sequestering iron for uptake.
Probab=99.04 E-value=2.1e-10 Score=130.82 Aligned_cols=135 Identities=13% Similarity=0.101 Sum_probs=98.6
Q ss_pred ceeeeecCc-----eEEEEecceeeccCCcceEEEEECCCCCcHHHHHHHHHHhC-CCceEEEecCccccc-------cc
Q 006117 41 DTLSFEKGF-----FIVIRACQLLAQKNHGIILVGVAGPSGAGKTVFTEKVLNFM-PSIAVITMDNYNDSS-------RI 107 (660)
Q Consensus 41 ~~ls~~~g~-----~~vL~~Isl~i~~ge~~~IIGI~GpSGSGKSTLak~L~~lL-p~~g~I~lDg~~~~~-------~~ 107 (660)
++++|.++. ..+|+++||.+++|+ +++|+||||||||||++.|++++ |+.|.|.+||.+... ..
T Consensus 341 ~~v~f~y~~~~~~~~~~l~~vs~~i~~G~---~~aivG~sGsGKSTl~~ll~g~~~p~~G~i~~~g~~i~~~~~~~~~~~ 417 (555)
T TIGR01194 341 KDVHMNPKAPEGSEGFALGPIDLRIAQGD---IVFIVGENGCGKSTLAKLFCGLYIPQEGEILLDGAAVSADSRDDYRDL 417 (555)
T ss_pred EEEEEEeCCCCCCcCceeccceEEEcCCc---EEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEECCCCCHHHHHhh
Confidence 455555543 258999999999999 99999999999999999999998 899999999975432 44
Q ss_pred ccccCCCCCCCchhhHHHHHH---------hhhc----Ccccc-cc-cccccccccccceeeecCCccEEEEecceeecc
Q 006117 108 IDGNFDDPRLTDYDTLLENIR---------GLKE----GKAVQ-VP-IYDFKSSSRIGYRTLEVPSSRIVIIEGIYALSE 172 (660)
Q Consensus 108 i~~vfq~p~l~d~~tl~e~L~---------~L~~----Gk~I~-~P-iyD~s~~~rs~~~~~~v~~a~VVIVEGilaL~d 172 (660)
+++++|++.+|+. ++.+|.. ...+ ...+. .| .|+. ....++++.+++..++.++-++.+++.|
T Consensus 418 i~~v~q~~~lf~~-ti~~n~~~~~~~~~~~~~~~~~~l~~~~~~lp~g~~t-~~~LSgGq~qRlalaRall~~~~ililD 495 (555)
T TIGR01194 418 FSAIFADFHLFDD-LIGPDEGEHASLDNAQQYLQRLEIADKVKIEDGGFST-TTALSTGQQKRLALICAWLEDRPILLFD 495 (555)
T ss_pred CcEEccChhhhhh-hhhcccccchhHHHHHHHHHHcCCchhhcccccccCC-cccCCHHHHHHHHHHHHHHcCCCEEEEe
Confidence 7889999887753 3443321 1110 01111 12 1221 1345667888899999999999999999
Q ss_pred cccCCCCE
Q 006117 173 KLRPLIDL 180 (660)
Q Consensus 173 eLr~llDl 180 (660)
|+...+|.
T Consensus 496 E~ts~LD~ 503 (555)
T TIGR01194 496 EWAADQDP 503 (555)
T ss_pred CCccCCCH
Confidence 99999986
No 371
>COG4172 ABC-type uncharacterized transport system, duplicated ATPase component [General function prediction only]
Probab=99.04 E-value=1.3e-09 Score=118.03 Aligned_cols=146 Identities=17% Similarity=0.235 Sum_probs=114.7
Q ss_pred ceeeeeccceeeeecCceEEEEecceeeccCCcceEEEEECCCCCcHHHHHHHHHHhCC------CceEEEecCccccc-
Q 006117 33 RYEIVPIEDTLSFEKGFFIVIRACQLLAQKNHGIILVGVAGPSGAGKTVFTEKVLNFMP------SIAVITMDNYNDSS- 105 (660)
Q Consensus 33 ~~ei~~~~~~ls~~~g~~~vL~~Isl~i~~ge~~~IIGI~GpSGSGKSTLak~L~~lLp------~~g~I~lDg~~~~~- 105 (660)
..++.+++-.|....+...++++|||.+.+|+ .++|+|.||||||..+..+++++| .+|.|.++|.....
T Consensus 6 lL~v~nLsV~f~~~~~~~~aVk~isf~i~~GE---tlAlVGESGSGKSvTa~sim~LLp~~~~~~~sg~i~f~G~dll~~ 82 (534)
T COG4172 6 LLSIRNLSVAFHQEGGTVEAVKGISFDIEAGE---TLALVGESGSGKSVTALSILGLLPSPAAAHPSGSILFDGEDLLAA 82 (534)
T ss_pred ceeeeccEEEEecCCcceEeeccceeeecCCC---EEEEEecCCCCccHHHHHHHHhcCCCcccCccceeEEcChhhhcC
Confidence 44556666677777778999999999999999 999999999999999999999995 36889999975321
Q ss_pred ----------ccccccCCCC--CCCchhhHHHHHHhhh---cC--------------c--ccccc--cccccccccccce
Q 006117 106 ----------RIIDGNFDDP--RLTDYDTLLENIRGLK---EG--------------K--AVQVP--IYDFKSSSRIGYR 152 (660)
Q Consensus 106 ----------~~i~~vfq~p--~l~d~~tl~e~L~~L~---~G--------------k--~I~~P--iyD~s~~~rs~~~ 152 (660)
..++++||+| .+.+..++.+.+.... .| + .+..| .++...|+.++++
T Consensus 83 se~~lr~iRG~~I~MIFQEPMtSLNPl~tIg~Qi~E~l~~Hrg~~~~~Ar~r~lelL~~VgI~~p~~rl~~yPHeLSGGq 162 (534)
T COG4172 83 SERQLRGVRGNKIGMIFQEPMTSLNPLHTIGKQLAEVLRLHRGLSRAAARARALELLELVGIPEPEKRLDAYPHELSGGQ 162 (534)
T ss_pred CHHHHhhhcccceEEEecccccccCcHhHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHcCCCchhhhhhhCCcccCcch
Confidence 3578999998 4677777776664322 11 0 12222 4677788999998
Q ss_pred eeecCCccEEEEecceeecccccCCCCEE
Q 006117 153 TLEVPSSRIVIIEGIYALSEKLRPLIDLR 181 (660)
Q Consensus 153 ~~~v~~a~VVIVEGilaL~deLr~llDlk 181 (660)
.+++-.+-.+..|+.+++.||+.-.+|..
T Consensus 163 RQRVMIAMALan~P~lLIADEPTTALDVt 191 (534)
T COG4172 163 RQRVMIAMALANEPDLLIADEPTTALDVT 191 (534)
T ss_pred hhHHHHHHHHcCCCCeEeecCCcchhhhh
Confidence 88888888899999999999999999974
No 372
>PF00005 ABC_tran: ABC transporter This structure is on hold until Dec 1999; InterPro: IPR003439 ABC transporters belong to the ATP-Binding Cassette (ABC) superfamily, which uses the hydrolysis of ATP to energise diverse biological systems. ABC transporters minimally consist of two conserved regions: a highly conserved ATP binding cassette (ABC) and a less conserved transmembrane domain (TMD). These can be found on the same protein or on two different ones. Most ABC transporters function as a dimer and therefore are constituted of four domains, two ABC modules and two TMDs. ABC transporters are involved in the export or import of a wide variety of substrates ranging from small ions to macromolecules. The major function of ABC import systems is to provide essential nutrients to bacteria. They are found only in prokaryotes and their four constitutive domains are usually encoded by independent polypeptides (two ABC proteins and two TMD proteins). Prokaryotic importers require additional extracytoplasmic binding proteins (one or more per systems) for function. In contrast, export systems are involved in the extrusion of noxious substances, the export of extracellular toxins and the targeting of membrane components. They are found in all living organisms and in general the TMD is fused to the ABC module in a variety of combinations. Some eukaryotic exporters encode the four domains on the same polypeptide chain []. The ABC module (approximately two hundred amino acid residues) is known to bind and hydrolyse ATP, thereby coupling transport to ATP hydrolysis in a large number of biological processes. The cassette is duplicated in several subfamilies. Its primary sequence is highly conserved, displaying a typical phosphate-binding loop: Walker A, and a magnesium binding site: Walker B. Besides these two regions, three other conserved motifs are present in the ABC cassette: the switch region which contains a histidine loop, postulated to polarise the attaching water molecule for hydrolysis, the signature conserved motif (LSGGQ) specific to the ABC transporter, and the Q-motif (between Walker A and the signature), which interacts with the gamma phosphate through a water bond. The Walker A, Walker B, Q-loop and switch region form the nucleotide binding site [, , ]. The 3D structure of a monomeric ABC module adopts a stubby L-shape with two distinct arms. ArmI (mainly beta-strand) contains Walker A and Walker B. The important residues for ATP hydrolysis and/or binding are located in the P-loop. The ATP-binding pocket is located at the extremity of armI. The perpendicular armII contains mostly the alpha helical subdomain with the signature motif. It only seems to be required for structural integrity of the ABC module. ArmII is in direct contact with the TMD. The hinge between armI and armII contains both the histidine loop and the Q-loop, making contact with the gamma phosphate of the ATP molecule. ATP hydrolysis leads to a conformational change that could facilitate ADP release. In the dimer the two ABC cassettes contact each other through hydrophobic interactions at the antiparallel beta-sheet of armI by a two-fold axis [, , , , , ]. The ATP-Binding Cassette (ABC) superfamily forms one of the largest of all protein families with a diversity of physiological functions []. Several studies have shown that there is a correlation between the functional characterisation and the phylogenetic classification of the ABC cassette [, ]. More than 50 subfamilies have been described based on a phylogenetic and functional classification [, , ]; (for further information see http://www.tcdb.org/tcdb/index.php?tc=3.A.1). On the basis of sequence similarities a family of related ATP-binding proteins has been characterised [, , , , ]. The proteins belonging to this family also contain one or two copies of the 'A' consensus sequence [] or the 'P-loop' [] (see IPR001687 from INTERPRO).; GO: 0005524 ATP binding, 0016887 ATPase activity; PDB: 3NHB_A 3NH9_A 3NHA_A 3NH6_A 1VCI_A 1V43_A 2YZ2_B 2PMK_A 2FFA_A 1XEF_D ....
Probab=99.04 E-value=4.2e-11 Score=110.70 Aligned_cols=71 Identities=25% Similarity=0.401 Sum_probs=60.5
Q ss_pred EEecceeeccCCcceEEEEECCCCCcHHHHHHHHHHhC-CCceEEEecCccccc-------ccccccCCCCCCCchhhHH
Q 006117 53 IRACQLLAQKNHGIILVGVAGPSGAGKTVFTEKVLNFM-PSIAVITMDNYNDSS-------RIIDGNFDDPRLTDYDTLL 124 (660)
Q Consensus 53 L~~Isl~i~~ge~~~IIGI~GpSGSGKSTLak~L~~lL-p~~g~I~lDg~~~~~-------~~i~~vfq~p~l~d~~tl~ 124 (660)
|+++++.+++|+ +++|+|+||||||||+++|++.. |..|.|.+++..... ..++++++++.+++..++.
T Consensus 1 L~~v~~~i~~g~---~~~i~G~nGsGKStLl~~l~g~~~~~~G~i~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~tv~ 77 (137)
T PF00005_consen 1 LKNVSLEIKPGE---IVAIVGPNGSGKSTLLKALAGLLPPDSGSILINGKDISDIDIEELRRRIGYVPQDPQLFPGLTVR 77 (137)
T ss_dssp EEEEEEEEETTS---EEEEEESTTSSHHHHHHHHTTSSHESEEEEEETTEEGTTSHHHHHHHTEEEEESSHCHHTTSBHH
T ss_pred CCceEEEEcCCC---EEEEEccCCCccccceeeecccccccccccccccccccccccccccccccccccccccccccccc
Confidence 689999999999 99999999999999999999999 789999999874432 3467888888777777666
Q ss_pred HH
Q 006117 125 EN 126 (660)
Q Consensus 125 e~ 126 (660)
++
T Consensus 78 ~~ 79 (137)
T PF00005_consen 78 EN 79 (137)
T ss_dssp HH
T ss_pred cc
Confidence 54
No 373
>TIGR01846 type_I_sec_HlyB type I secretion system ABC transporter, HlyB family. Type I protein secretion is a system in some Gram-negative bacteria to export proteins (often proteases) across both inner and outer membranes to the extracellular medium. This is one of three proteins of the type I secretion apparatus. Targeted proteins are not cleaved at the N-terminus, but rather carry signals located toward the extreme C-terminus to direct type I secretion.
Probab=99.03 E-value=2.8e-10 Score=132.88 Aligned_cols=136 Identities=17% Similarity=0.291 Sum_probs=104.3
Q ss_pred ceeeeecC--ceEEEEecceeeccCCcceEEEEECCCCCcHHHHHHHHHHhC-CCceEEEecCccccc-------ccccc
Q 006117 41 DTLSFEKG--FFIVIRACQLLAQKNHGIILVGVAGPSGAGKTVFTEKVLNFM-PSIAVITMDNYNDSS-------RIIDG 110 (660)
Q Consensus 41 ~~ls~~~g--~~~vL~~Isl~i~~ge~~~IIGI~GpSGSGKSTLak~L~~lL-p~~g~I~lDg~~~~~-------~~i~~ 110 (660)
++++|.++ ...++++++|.+++|+ .++|+|+||||||||+++|++++ |..|.|.+||.+... +.+++
T Consensus 459 ~~vsf~y~~~~~~il~~i~l~i~~G~---~vaivG~sGsGKSTL~~ll~g~~~p~~G~I~idg~~i~~~~~~~~r~~i~~ 535 (694)
T TIGR01846 459 ENIRFRYAPDSPEVLSNLNLDIKPGE---FIGIVGPSGSGKSTLTKLLQRLYTPQHGQVLVDGVDLAIADPAWLRRQMGV 535 (694)
T ss_pred EEEEEEcCCCCccccccceEEECCCC---EEEEECCCCCCHHHHHHHHhcCCCCCCceEEECCEehhhCCHHHHHHhCeE
Confidence 45556553 3569999999999999 99999999999999999999998 899999999975432 45789
Q ss_pred cCCCCCCCchhhHHHHHHhhhcCc----------------cc-ccc-cccccc----cccccceeeecCCccEEEEecce
Q 006117 111 NFDDPRLTDYDTLLENIRGLKEGK----------------AV-QVP-IYDFKS----SSRIGYRTLEVPSSRIVIIEGIY 168 (660)
Q Consensus 111 vfq~p~l~d~~tl~e~L~~L~~Gk----------------~I-~~P-iyD~s~----~~rs~~~~~~v~~a~VVIVEGil 168 (660)
++|++.+|+ .++++|+....... .+ ..| .|+... ...++++.+++..++.++-++.+
T Consensus 536 v~q~~~lf~-~ti~eNi~~~~~~~~~~~i~~a~~~~~l~~~i~~lp~gl~t~i~~~g~~LSgGq~qri~lARall~~~~i 614 (694)
T TIGR01846 536 VLQENVLFS-RSIRDNIALCNPGAPFEHVIHAAKLAGAHDFISELPQGYNTEVGEKGANLSGGQRQRIAIARALVGNPRI 614 (694)
T ss_pred EccCCeehh-hhHHHHHhcCCCCCCHHHHHHHHHHcChHHHHHhCcCccCcEecCCCCCCCHHHHHHHHHHHHHHhCCCE
Confidence 999999887 68899886422110 01 112 123222 23456788888888999999999
Q ss_pred eecccccCCCCE
Q 006117 169 ALSEKLRPLIDL 180 (660)
Q Consensus 169 aL~deLr~llDl 180 (660)
++.||+...+|.
T Consensus 615 lilDEpts~LD~ 626 (694)
T TIGR01846 615 LIFDEATSALDY 626 (694)
T ss_pred EEEECCCcCCCH
Confidence 999999999986
No 374
>PRK15177 Vi polysaccharide export ATP-binding protein VexC; Provisional
Probab=99.03 E-value=1.4e-10 Score=116.63 Aligned_cols=120 Identities=14% Similarity=0.066 Sum_probs=86.0
Q ss_pred EEEecceeeccCCcceEEEEECCCCCcHHHHHHHHHHhC-CCceEEE-ecCcccccccccccCCCCCCCchhhHHHHHHh
Q 006117 52 VIRACQLLAQKNHGIILVGVAGPSGAGKTVFTEKVLNFM-PSIAVIT-MDNYNDSSRIIDGNFDDPRLTDYDTLLENIRG 129 (660)
Q Consensus 52 vL~~Isl~i~~ge~~~IIGI~GpSGSGKSTLak~L~~lL-p~~g~I~-lDg~~~~~~~i~~vfq~p~l~d~~tl~e~L~~ 129 (660)
++++++|.+++|+ ++||+||||||||||+++|++++ |+.|.|. +++.... ..+.+.+++..++.+++..
T Consensus 2 vl~~vs~~i~~Ge---~~~l~G~NGsGKSTLlk~i~Gl~~~~sG~i~~~~~~~~~------~~~~~~l~~~ltv~enl~~ 72 (213)
T PRK15177 2 VLDKTDFVMGYHE---HIGILAAPGSGKTTLTRLLCGLDAPDEGDFIGLRGDALP------LGANSFILPGLTGEENARM 72 (213)
T ss_pred eeeeeeEEEcCCC---EEEEECCCCCCHHHHHHHHhCCccCCCCCEEEecCceec------cccccccCCcCcHHHHHHH
Confidence 6899999999999 99999999999999999999998 7889886 6654221 1234556777788888765
Q ss_pred hhc--Cc---cc--------ccc-cccccccccccceeeecCCccEEEEecceeecccccCCCCE
Q 006117 130 LKE--GK---AV--------QVP-IYDFKSSSRIGYRTLEVPSSRIVIIEGIYALSEKLRPLIDL 180 (660)
Q Consensus 130 L~~--Gk---~I--------~~P-iyD~s~~~rs~~~~~~v~~a~VVIVEGilaL~deLr~llDl 180 (660)
... +. .. ..+ .++...+..++++..++..+..++.++.+++.||+...+|.
T Consensus 73 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~lS~G~~qrv~la~al~~~p~llllDEP~~~lD~ 137 (213)
T PRK15177 73 MASLYGLDGDEFSHFCYQLTQLEQCYTDRVSEYSVTMKTHLAFAINLLLPCRLYIADGKLYTGDN 137 (213)
T ss_pred HHHHcCCCHHHHHHHHHHHhChhHHhhchHhhcCHHHHHHHHHHHHHhcCCCEEEECCCCccCCH
Confidence 322 10 00 001 12223334455677777788888889999899998877775
No 375
>cd02020 CMPK Cytidine monophosphate kinase (CMPK) catalyzes the reversible phosphorylation of cytidine monophosphate (CMP) to produce cytidine diphosphate (CDP), using ATP as the preferred phosphoryl donor.
Probab=99.03 E-value=2e-09 Score=99.98 Aligned_cols=143 Identities=15% Similarity=0.191 Sum_probs=90.9
Q ss_pred EEEEECCCCCcHHHHHHHHHHhCCCceEEEecCcccccccccccCCCCCCCchhhHHHHHHhhhcCcccccccccccccc
Q 006117 68 LVGVAGPSGAGKTVFTEKVLNFMPSIAVITMDNYNDSSRIIDGNFDDPRLTDYDTLLENIRGLKEGKAVQVPIYDFKSSS 147 (660)
Q Consensus 68 IIGI~GpSGSGKSTLak~L~~lLp~~g~I~lDg~~~~~~~i~~vfq~p~l~d~~tl~e~L~~L~~Gk~I~~PiyD~s~~~ 147 (660)
+|.|+|++||||||+++.|+..+ +...++.|+....... ...-..+ ....+.+.+....
T Consensus 1 ~I~i~G~~GsGKst~a~~la~~~-~~~~~~~~~i~~e~~~-~~~~~~~---~~~~i~~~l~~~~---------------- 59 (147)
T cd02020 1 IIAIDGPAGSGKSTVAKLLAKKL-GLPYLDTGGIRTEEVG-KLASEVA---AIPEVRKALDERQ---------------- 59 (147)
T ss_pred CEEEECCCCCCHHHHHHHHHHHh-CCceeccccCCHHHHH-HHHHHhc---ccHhHHHHHHHHH----------------
Confidence 58999999999999999999987 3445555532111000 0000000 0001111111100
Q ss_pred cccceeeecCCccEEEEecceeecccccCCCCEEEEEEcChhHHHHHHHHHHHHH-hCCCHHHHHHHHHhccccchhhcc
Q 006117 148 RIGYRTLEVPSSRIVIIEGIYALSEKLRPLIDLRVSVTGGVHFDLVKRVFRDIQR-VGQEPEEIIHQISETVYPMYKAFI 226 (660)
Q Consensus 148 rs~~~~~~v~~a~VVIVEGilaL~deLr~llDlkIfVdad~dirLiRRI~RDv~e-RGrs~E~Vl~qy~~~v~P~~~~fI 226 (660)
..+.....+|+||.++.. .+.+.+|+.||+++|.+++..|.+.|+... +|.+.+++.+++.....+.+..|.
T Consensus 60 ------~~~~~~~~~Vidg~~~~~-~~~~~~~~~i~l~~~~~~r~~R~~~r~~~~~~~~~~~~~~~~~~~~d~~~~~~~~ 132 (147)
T cd02020 60 ------RELAKKPGIVLEGRDIGT-VVFPDADLKIFLTASPEVRAKRRAKQLQAKGEGVDLEEILAEIIERDERDSTRYV 132 (147)
T ss_pred ------HHHhhCCCEEEEeeeeee-EEcCCCCEEEEEECCHHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHHhhhccc
Confidence 001112347889987643 235678999999999999888888887442 378999999999999999999999
Q ss_pred cCCcCcC-cEEEe
Q 006117 227 EPDLQTA-HIKII 238 (660)
Q Consensus 227 eP~k~~A-DiII~ 238 (660)
.|+.... |++|+
T Consensus 133 ~~~~~~~~dl~i~ 145 (147)
T cd02020 133 APLKLAEDAIVID 145 (147)
T ss_pred ccccCCCCcEEEe
Confidence 9987444 46653
No 376
>KOG0056 consensus Heavy metal exporter HMT1, ABC superfamily [Inorganic ion transport and metabolism]
Probab=99.03 E-value=1.3e-10 Score=127.65 Aligned_cols=160 Identities=22% Similarity=0.276 Sum_probs=114.6
Q ss_pred ccccchhhhhcccCCCceee---eeccceeeeecC-ceEEEEecceeeccCCcceEEEEECCCCCcHHHHHHHHHHhC-C
Q 006117 17 GLLRDQVQLVKKKDSDRYEI---VPIEDTLSFEKG-FFIVIRACQLLAQKNHGIILVGVAGPSGAGKTVFTEKVLNFM-P 91 (660)
Q Consensus 17 ~ll~~~~~l~~~~~~~~~ei---~~~~~~ls~~~g-~~~vL~~Isl~i~~ge~~~IIGI~GpSGSGKSTLak~L~~lL-p 91 (660)
.++++++++++.+++.-... ...-++++|.+. .+.+|++|||.+++|+ .|+++||||+||||+++.|-..+ -
T Consensus 514 dllkee~eVvd~P~a~pl~~~~G~i~fsnvtF~Y~p~k~vl~disF~v~pGk---tvAlVG~SGaGKSTimRlLfRffdv 590 (790)
T KOG0056|consen 514 DLLKEEPEVVDLPGAPPLKVTQGKIEFSNVTFAYDPGKPVLSDISFTVQPGK---TVALVGPSGAGKSTIMRLLFRFFDV 590 (790)
T ss_pred HHhhcCchhhcCCCCCCccccCCeEEEEEeEEecCCCCceeecceEEecCCc---EEEEECCCCCchhHHHHHHHHHhhc
Confidence 47888888888776432211 122344555553 4689999999999999 99999999999999999999998 5
Q ss_pred CceEEEecCccccc-------ccccccCCCCCCCchhhHHHHHHhhhcC------------cccc-----cc-ccccccc
Q 006117 92 SIAVITMDNYNDSS-------RIIDGNFDDPRLTDYDTLLENIRGLKEG------------KAVQ-----VP-IYDFKSS 146 (660)
Q Consensus 92 ~~g~I~lDg~~~~~-------~~i~~vfq~p~l~d~~tl~e~L~~L~~G------------k~I~-----~P-iyD~s~~ 146 (660)
.+|.|.+||.+... ..++.++|+..+|+ +++..|++.-+-+ ..|+ .| -|.-..+
T Consensus 591 ~sGsI~iDgqdIrnvt~~SLRs~IGVVPQDtvLFN-dTI~yNIryak~~AsneevyaAAkAA~IHdrIl~fPegY~t~VG 669 (790)
T KOG0056|consen 591 NSGSITIDGQDIRNVTQSSLRSSIGVVPQDTVLFN-DTILYNIRYAKPSASNEEVYAAAKAAQIHDRILQFPEGYNTRVG 669 (790)
T ss_pred cCceEEEcCchHHHHHHHHHHHhcCcccCcceeec-ceeeeheeecCCCCChHHHHHHHHHhhHHHHHhcCchhhhhhhh
Confidence 79999999986532 46899999988876 4555555432211 0111 12 2333333
Q ss_pred c----cccceeeecCCccEEEEecceeecccccCCCCE
Q 006117 147 S----RIGYRTLEVPSSRIVIIEGIYALSEKLRPLIDL 180 (660)
Q Consensus 147 ~----rs~~~~~~v~~a~VVIVEGilaL~deLr~llDl 180 (660)
+ .+++++++++.++-++-.+..++.||-...+|.
T Consensus 670 ERGLkLSGGEKQRVAiARtiLK~P~iIlLDEATSALDT 707 (790)
T KOG0056|consen 670 ERGLKLSGGEKQRVAIARTILKAPSIILLDEATSALDT 707 (790)
T ss_pred hcccccCCcchhhHHHHHHHhcCCcEEEEcchhhhcCC
Confidence 3 356788889999999999999999998888875
No 377
>cd03236 ABC_RNaseL_inhibitor_domain1 The ATPase domain 1 of RNase L inhibitor. The ABC ATPase, RNase L inhibitor (RLI), is a key enzyme in ribosomal biogenesis, formation of translation preinitiation complexes, and assembly of HIV capsids. RLI s are not transport proteins and thus cluster with a group of soluble proteins that lack the transmembrane components commonly found in other members of the family. Structurally, RLIs have an N-terminal Fe-S domain and two nucleotide binding domains which are arranged to form two composite active sites in their interface cleft. RLI is one of the most conserved enzymes between archaea and eukaryotes with a sequence identity more than 48%. The high degree of evolutionary conservation suggests that RLI performs a central role in archaeal and eukaryotic physiology.
Probab=99.02 E-value=1.9e-10 Score=119.27 Aligned_cols=134 Identities=11% Similarity=0.155 Sum_probs=90.2
Q ss_pred eeeeecCc-eEEEEecceeeccCCcceEEEEECCCCCcHHHHHHHHHHhC-CCceEEE-----------ecCccccc---
Q 006117 42 TLSFEKGF-FIVIRACQLLAQKNHGIILVGVAGPSGAGKTVFTEKVLNFM-PSIAVIT-----------MDNYNDSS--- 105 (660)
Q Consensus 42 ~ls~~~g~-~~vL~~Isl~i~~ge~~~IIGI~GpSGSGKSTLak~L~~lL-p~~g~I~-----------lDg~~~~~--- 105 (660)
.+++.++. ..+++++++ +.+|+ ++||+|+||||||||+++|++++ |+.|.|. ++|.....
T Consensus 5 ~~~~~y~~~~~~l~~i~~-i~~Ge---~~~IvG~nGsGKSTLlk~l~Gl~~p~~G~I~~~~~~~~~~~~~~g~~~~~~~~ 80 (255)
T cd03236 5 EPVHRYGPNSFKLHRLPV-PREGQ---VLGLVGPNGIGKSTALKILAGKLKPNLGKFDDPPDWDEILDEFRGSELQNYFT 80 (255)
T ss_pred CcceeecCcchhhhcCCC-CCCCC---EEEEECCCCCCHHHHHHHHhCCcCCCCceEeeccccchhhhhccCchhhhhhH
Confidence 34444443 358999994 89999 99999999999999999999999 7899995 66653211
Q ss_pred ------ccccccCCCCCCCchhhHHHHHHhhhcCc-----------cccc-ccccccccccccceeeecCCccEEEEecc
Q 006117 106 ------RIIDGNFDDPRLTDYDTLLENIRGLKEGK-----------AVQV-PIYDFKSSSRIGYRTLEVPSSRIVIIEGI 167 (660)
Q Consensus 106 ------~~i~~vfq~p~l~d~~tl~e~L~~L~~Gk-----------~I~~-PiyD~s~~~rs~~~~~~v~~a~VVIVEGi 167 (660)
..+++++|++..++. ++.+++....... .... ...+......++++.+++..++.++.++.
T Consensus 81 ~~~~~~~~i~~~~~~~~~~~~-~~~~~i~~~l~~~~~~~~~~~~l~~~gl~~~~~~~~~~LS~G~~qrv~laral~~~p~ 159 (255)
T cd03236 81 KLLEGDVKVIVKPQYVDLIPK-AVKGKVGELLKKKDERGKLDELVDQLELRHVLDRNIDQLSGGELQRVAIAAALARDAD 159 (255)
T ss_pred HhhhcccceeeecchhccCch-HHHHHHHHHhchhHHHHHHHHHHHHcCCchhhcCChhhCCHHHHHHHHHHHHHHhCCC
Confidence 123566777666652 4444433211100 0111 11223333455567777888888899999
Q ss_pred eeecccccCCCCE
Q 006117 168 YALSEKLRPLIDL 180 (660)
Q Consensus 168 laL~deLr~llDl 180 (660)
+++.||+...+|.
T Consensus 160 illlDEPts~LD~ 172 (255)
T cd03236 160 FYFFDEPSSYLDI 172 (255)
T ss_pred EEEEECCCCCCCH
Confidence 9999999999997
No 378
>TIGR00152 dephospho-CoA kinase. This model produces scores in the range of 0-25 bits against adenylate, guanylate, uridine, and thymidylate kinases.
Probab=99.02 E-value=2.4e-10 Score=112.42 Aligned_cols=163 Identities=19% Similarity=0.217 Sum_probs=102.2
Q ss_pred EEEEECCCCCcHHHHHHHHHHhCCCceEEEecCcccc----c----c----ccc-ccCCCCCCCchhhHHHHHHh----h
Q 006117 68 LVGVAGPSGAGKTVFTEKVLNFMPSIAVITMDNYNDS----S----R----IID-GNFDDPRLTDYDTLLENIRG----L 130 (660)
Q Consensus 68 IIGI~GpSGSGKSTLak~L~~lLp~~g~I~lDg~~~~----~----~----~i~-~vfq~p~l~d~~tl~e~L~~----L 130 (660)
+|||+|+.||||||+++.|.... +...++.|..... . . ..+ -+++..+-.+...+.+.+.. +
T Consensus 1 ~i~itG~~gsGKst~~~~l~~~~-~~~~i~~D~~~~~~~~~~~~~~~~i~~~fg~~i~~~~g~idr~~L~~~vf~~~~~~ 79 (188)
T TIGR00152 1 IIGLTGGIGSGKSTVANYLADKY-HFPVIDADKIAHQVVEKGSPAYEKIVDHFGAQILNEDGELDRKALGERVFNDPEEL 79 (188)
T ss_pred CEEEECCCCCCHHHHHHHHHHhc-CCeEEeCCHHHHHHHhcCChHHHHHHHHHCHHHhCCCCCCCHHHHHHHHhCCHHHH
Confidence 48999999999999999999875 3567777765210 0 0 011 11222233444444433321 1
Q ss_pred hcCcccccccccccccccccceeeecCCccEEEEecceeecccccCCCCEEEEEEcChhHHHHHHHHHHHHHhCCCHHHH
Q 006117 131 KEGKAVQVPIYDFKSSSRIGYRTLEVPSSRIVIIEGIYALSEKLRPLIDLRVSVTGGVHFDLVKRVFRDIQRVGQEPEEI 210 (660)
Q Consensus 131 ~~Gk~I~~PiyD~s~~~rs~~~~~~v~~a~VVIVEGilaL~deLr~llDlkIfVdad~dirLiRRI~RDv~eRGrs~E~V 210 (660)
..-+.+.+|..-........ .. .....+++++.++++...+...+|..|||++|.++++.|.+.|+ |.+.+++
T Consensus 80 ~~le~ilhP~i~~~i~~~i~--~~-~~~~~~vvi~~pll~e~~~~~~~D~vv~V~~~~~~~~~Rl~~R~----~~s~~~~ 152 (188)
T TIGR00152 80 KWLNNLLHPLIREWMKKLLA--QF-QSKLAYVLLDVPLLFENKLRSLCDRVIVVDVSPQLQLERLMQRD----NLTEEEV 152 (188)
T ss_pred HHHHHhhCHHHHHHHHHHHH--Hh-hcCCCEEEEEchHhhhCCcHHhCCEEEEEECCHHHHHHHHHHcC----CCCHHHH
Confidence 11123445543333222111 00 01124788999888877888999999999999998877777665 8899998
Q ss_pred HHHHHhccccchhhcccCCcCcCcEEEeCCCCCC
Q 006117 211 IHQISETVYPMYKAFIEPDLQTAHIKIINKFNPF 244 (660)
Q Consensus 211 l~qy~~~v~P~~~~fIeP~k~~ADiII~N~~~p~ 244 (660)
..++..+ .+. ++.+..||++|.|+++++
T Consensus 153 ~~r~~~q-~~~-----~~~~~~ad~vI~N~~~~e 180 (188)
T TIGR00152 153 QKRLASQ-MDI-----EERLARADDVIDNSATLA 180 (188)
T ss_pred HHHHHhc-CCH-----HHHHHhCCEEEECCCCHH
Confidence 8888554 333 344678999999987653
No 379
>PLN03130 ABC transporter C family member; Provisional
Probab=99.02 E-value=1.4e-10 Score=146.44 Aligned_cols=136 Identities=15% Similarity=0.178 Sum_probs=105.6
Q ss_pred ceeeeecC--ceEEEEecceeeccCCcceEEEEECCCCCcHHHHHHHHHHhC-CCceEEEecCccccc-------ccccc
Q 006117 41 DTLSFEKG--FFIVIRACQLLAQKNHGIILVGVAGPSGAGKTVFTEKVLNFM-PSIAVITMDNYNDSS-------RIIDG 110 (660)
Q Consensus 41 ~~ls~~~g--~~~vL~~Isl~i~~ge~~~IIGI~GpSGSGKSTLak~L~~lL-p~~g~I~lDg~~~~~-------~~i~~ 110 (660)
++++|.|. ...+|++++|.+++|+ .|||+|+||||||||++.|.+++ |..|.|.+||.+... +.+++
T Consensus 1241 ~nVsf~Y~~~~~~VL~~is~~I~~Ge---kVaIVGrSGSGKSTLl~lL~rl~~p~~G~I~IDG~dI~~i~l~~LR~~Isi 1317 (1622)
T PLN03130 1241 EDVVLRYRPELPPVLHGLSFEISPSE---KVGIVGRTGAGKSSMLNALFRIVELERGRILIDGCDISKFGLMDLRKVLGI 1317 (1622)
T ss_pred EEEEEEeCCCCCceecceeEEEcCCC---EEEEECCCCCCHHHHHHHHhCcCCCCCceEEECCEecccCCHHHHHhccEE
Confidence 44555553 3469999999999999 99999999999999999999998 899999999986432 46889
Q ss_pred cCCCCCCCchhhHHHHHHhhhcCc---------------cc-ccc-ccccccc----ccccceeeecCCccEEEEeccee
Q 006117 111 NFDDPRLTDYDTLLENIRGLKEGK---------------AV-QVP-IYDFKSS----SRIGYRTLEVPSSRIVIIEGIYA 169 (660)
Q Consensus 111 vfq~p~l~d~~tl~e~L~~L~~Gk---------------~I-~~P-iyD~s~~----~rs~~~~~~v~~a~VVIVEGila 169 (660)
++|+|.+|+ .++++||.....-. .+ ..| -||...+ ..++++++.+..++.++-++..+
T Consensus 1318 VpQdp~LF~-GTIreNLd~~~~~tdeei~~Al~~a~l~~~I~~lp~GLdt~Vge~G~nLSgGQrQrlaLARALLr~p~IL 1396 (1622)
T PLN03130 1318 IPQAPVLFS-GTVRFNLDPFNEHNDADLWESLERAHLKDVIRRNSLGLDAEVSEAGENFSVGQRQLLSLARALLRRSKIL 1396 (1622)
T ss_pred ECCCCcccc-ccHHHHhCcCCCCCHHHHHHHHHHcCcHHHHHhCccccCccccCCCCCCCHHHHHHHHHHHHHHcCCCEE
Confidence 999999997 48999986432110 01 112 2333332 34567888899999999999999
Q ss_pred ecccccCCCCE
Q 006117 170 LSEKLRPLIDL 180 (660)
Q Consensus 170 L~deLr~llDl 180 (660)
+.||....+|.
T Consensus 1397 ILDEATSaLD~ 1407 (1622)
T PLN03130 1397 VLDEATAAVDV 1407 (1622)
T ss_pred EEECCCCCCCH
Confidence 99999999986
No 380
>PLN03232 ABC transporter C family member; Provisional
Probab=99.02 E-value=9.9e-11 Score=146.98 Aligned_cols=136 Identities=17% Similarity=0.226 Sum_probs=105.3
Q ss_pred ceeeeecC--ceEEEEecceeeccCCcceEEEEECCCCCcHHHHHHHHHHhC-CCceEEEecCccccc-------ccccc
Q 006117 41 DTLSFEKG--FFIVIRACQLLAQKNHGIILVGVAGPSGAGKTVFTEKVLNFM-PSIAVITMDNYNDSS-------RIIDG 110 (660)
Q Consensus 41 ~~ls~~~g--~~~vL~~Isl~i~~ge~~~IIGI~GpSGSGKSTLak~L~~lL-p~~g~I~lDg~~~~~-------~~i~~ 110 (660)
+++++.|. ...+|+++||.+++|+ .|||+|+||||||||++.|.+++ |..|.|.+||.+... +.+++
T Consensus 1238 ~nVsf~Y~~~~~~vL~~isl~I~~Ge---kvaIVG~SGSGKSTL~~lL~rl~~p~~G~I~IdG~di~~i~~~~lR~~i~i 1314 (1495)
T PLN03232 1238 EDVHLRYRPGLPPVLHGLSFFVSPSE---KVGVVGRTGAGKSSMLNALFRIVELEKGRIMIDDCDVAKFGLTDLRRVLSI 1314 (1495)
T ss_pred EEEEEEECCCCCcccccceEEEcCCC---EEEEECCCCCCHHHHHHHHhCCCcCCCceEEECCEEhhhCCHHHHHhhcEE
Confidence 45556553 3579999999999999 99999999999999999999998 899999999975432 45889
Q ss_pred cCCCCCCCchhhHHHHHHhhhcCc---------------cc-ccc-ccccccc----ccccceeeecCCccEEEEeccee
Q 006117 111 NFDDPRLTDYDTLLENIRGLKEGK---------------AV-QVP-IYDFKSS----SRIGYRTLEVPSSRIVIIEGIYA 169 (660)
Q Consensus 111 vfq~p~l~d~~tl~e~L~~L~~Gk---------------~I-~~P-iyD~s~~----~rs~~~~~~v~~a~VVIVEGila 169 (660)
++|+|.+|+ .++++||.....-. .+ ..| -+|...+ ..++++++++..++.++-++..+
T Consensus 1315 VpQdp~LF~-gTIr~NL~~~~~~sdeei~~al~~a~l~~~I~~lp~GLdt~v~e~G~~LSgGQrQrlaLARALLr~~~IL 1393 (1495)
T PLN03232 1315 IPQSPVLFS-GTVRFNIDPFSEHNDADLWEALERAHIKDVIDRNPFGLDAEVSEGGENFSVGQRQLLSLARALLRRSKIL 1393 (1495)
T ss_pred ECCCCeeeC-ccHHHHcCCCCCCCHHHHHHHHHHcCCHHHHHhCcCCCCceecCCCCCCCHHHHHHHHHHHHHHhCCCEE
Confidence 999999997 58999886432100 01 112 2333222 24567888889999999999999
Q ss_pred ecccccCCCCE
Q 006117 170 LSEKLRPLIDL 180 (660)
Q Consensus 170 L~deLr~llDl 180 (660)
+.||....+|.
T Consensus 1394 ILDEATSaLD~ 1404 (1495)
T PLN03232 1394 VLDEATASVDV 1404 (1495)
T ss_pred EEECCcccCCH
Confidence 99999999986
No 381
>COG4161 ArtP ABC-type arginine transport system, ATPase component [Amino acid transport and metabolism]
Probab=99.02 E-value=5.6e-10 Score=108.21 Aligned_cols=156 Identities=18% Similarity=0.182 Sum_probs=118.8
Q ss_pred ceeeeecCceEEEEecceeeccCCcceEEEEECCCCCcHHHHHHHHHHhC-CCceEEEecCc--ccc-----------cc
Q 006117 41 DTLSFEKGFFIVIRACQLLAQKNHGIILVGVAGPSGAGKTVFTEKVLNFM-PSIAVITMDNY--NDS-----------SR 106 (660)
Q Consensus 41 ~~ls~~~g~~~vL~~Isl~i~~ge~~~IIGI~GpSGSGKSTLak~L~~lL-p~~g~I~lDg~--~~~-----------~~ 106 (660)
+.+.+-||...+|-+|+|..+.|+ .+.+.||||+|||||++.|.-+- |.+|.+.+-+. +.. ++
T Consensus 6 ~~in~~yg~~q~lfdi~l~~~~ge---tlvllgpsgagkssllr~lnlle~p~sg~l~ia~~~fd~s~~~~~k~i~~lr~ 82 (242)
T COG4161 6 NGINCFYGAHQALFDITLDCPEGE---TLVLLGPSGAGKSSLLRVLNLLEMPRSGTLNIAGNHFDFSKTPSDKAIRDLRR 82 (242)
T ss_pred cccccccccchheeeeeecCCCCC---EEEEECCCCCchHHHHHHHHHHhCCCCCeEEecccccccccCccHHHHHHHHH
Confidence 556677888899999999999999 99999999999999999988765 88999888763 211 14
Q ss_pred cccccCCCCCCCchhhHHHHHHhhhc---C--------------cccc-cccccccccccccceeeecCCccEEEEecce
Q 006117 107 IIDGNFDDPRLTDYDTLLENIRGLKE---G--------------KAVQ-VPIYDFKSSSRIGYRTLEVPSSRIVIIEGIY 168 (660)
Q Consensus 107 ~i~~vfq~p~l~d~~tl~e~L~~L~~---G--------------k~I~-~PiyD~s~~~rs~~~~~~v~~a~VVIVEGil 168 (660)
.++++||...+|+.+++.+||-.-.. | +... .+.-|.-.-..++++.++++.++.+..++-.
T Consensus 83 ~vgmvfqqy~lwphltv~enlieap~kv~gl~~~qa~~~a~ellkrlrl~~~adr~plhlsggqqqrvaiaralmmkpqv 162 (242)
T COG4161 83 NVGMVFQQYNLWPHLTVQENLIEAPCRVLGLSKDQALARAEKLLKRLRLKPYADRYPLHLSGGQQQRVAIARALMMEPQV 162 (242)
T ss_pred hhhhhhhhhccCchhHHHHHHHhhhHHHhCCCHHHHHHHHHHHHHHhccccccccCceecccchhhhHHHHHHHhcCCcE
Confidence 58899999999999999999743110 1 0111 1222333344567788899999999999999
Q ss_pred eecccccCCCCEEEEEEcChhHHHHHHHHHHHHHhCCC
Q 006117 169 ALSEKLRPLIDLRVSVTGGVHFDLVKRVFRDIQRVGQE 206 (660)
Q Consensus 169 aL~deLr~llDlkIfVdad~dirLiRRI~RDv~eRGrs 206 (660)
++.||+...+|. +-+..+-.|.+...+.|.+
T Consensus 163 llfdeptaaldp-------eitaqvv~iikel~~tgit 193 (242)
T COG4161 163 LLFDEPTAALDP-------EITAQIVSIIKELAETGIT 193 (242)
T ss_pred EeecCcccccCH-------HHHHHHHHHHHHHHhcCce
Confidence 999999999985 4455666677777766654
No 382
>PRK13545 tagH teichoic acids export protein ATP-binding subunit; Provisional
Probab=99.02 E-value=3.9e-10 Score=127.24 Aligned_cols=151 Identities=13% Similarity=0.108 Sum_probs=99.2
Q ss_pred ceeeeecCc---eEEEEecceeeccCCcceEEEEECCCCCcHHHHHHHHHHhC-CCceEEEecCcccccccccccCCCCC
Q 006117 41 DTLSFEKGF---FIVIRACQLLAQKNHGIILVGVAGPSGAGKTVFTEKVLNFM-PSIAVITMDNYNDSSRIIDGNFDDPR 116 (660)
Q Consensus 41 ~~ls~~~g~---~~vL~~Isl~i~~ge~~~IIGI~GpSGSGKSTLak~L~~lL-p~~g~I~lDg~~~~~~~i~~vfq~p~ 116 (660)
+++++.++. ..+|++++|.+++|+ ++||+|+||||||||+++|++++ |..|.|.++|.... +. ..+.
T Consensus 25 knL~~~~~~~~~~~IL~nVSfsI~~GE---ivgIiGpNGSGKSTLLkiLaGLl~P~sGeI~I~G~~~~---i~---~~~~ 95 (549)
T PRK13545 25 KDLFFRSKDGEYHYALNNISFEVPEGE---IVGIIGLNGSGKSTLSNLIAGVTMPNKGTVDIKGSAAL---IA---ISSG 95 (549)
T ss_pred EEEEEecCCCccceEEeeeEEEEeCCC---EEEEEcCCCCCHHHHHHHHhCCCCCCceEEEECCEeee---EE---eccc
Confidence 344444443 469999999999999 99999999999999999999998 78999999885311 11 1122
Q ss_pred CCchhhHHHHHHhhh--cCc--------------cccc-ccccccccccccceeeecCCccEEEEecceeecccccCCCC
Q 006117 117 LTDYDTLLENIRGLK--EGK--------------AVQV-PIYDFKSSSRIGYRTLEVPSSRIVIIEGIYALSEKLRPLID 179 (660)
Q Consensus 117 l~d~~tl~e~L~~L~--~Gk--------------~I~~-PiyD~s~~~rs~~~~~~v~~a~VVIVEGilaL~deLr~llD 179 (660)
+++..++.+++.... .+. .... +..+......++++.+++..++.++.++.+++.||+...+|
T Consensus 96 l~~~lTV~EnL~l~~~~~~~~~~e~~e~i~elLe~lgL~~~ld~~~~~LSGGQrQRVaLArAL~~~P~LLLLDEPTsgLD 175 (549)
T PRK13545 96 LNGQLTGIENIELKGLMMGLTKEKIKEIIPEIIEFADIGKFIYQPVKTYSSGMKSRLGFAISVHINPDILVIDEALSVGD 175 (549)
T ss_pred cCCCCcHHHHHHhhhhhcCCCHHHHHHHHHHHHHHcCChhHhhCCcccCCHHHHHHHHHHHHHHhCCCEEEEECCcccCC
Confidence 334445666653211 010 0001 11233344556677788888888999999999999999999
Q ss_pred EEEEEEcChhHHHHHHHHHHHHHhCCCH
Q 006117 180 LRVSVTGGVHFDLVKRVFRDIQRVGQEP 207 (660)
Q Consensus 180 lkIfVdad~dirLiRRI~RDv~eRGrs~ 207 (660)
. ...+.+..+.+...+.|.+.
T Consensus 176 ~-------~sr~~LlelL~el~~~G~TI 196 (549)
T PRK13545 176 Q-------TFTKKCLDKMNEFKEQGKTI 196 (549)
T ss_pred H-------HHHHHHHHHHHHHHhCCCEE
Confidence 6 23333344444444445443
No 383
>TIGR03771 anch_rpt_ABC anchored repeat-type ABC transporter, ATP-binding subunit. This protein family is the ATP-binding cassette subunit of binding protein-dependent ABC transporter complex that strictly co-occurs with TIGR03769. TIGRFAMs model TIGR03769 describes a protein domain that occurs singly or as one of up to three repeats in proteins of a number of Actinobacteria, including Propionibacterium acnes KPA171202. The TIGR03769 domain occurs both in an adjacent gene for the substrate-binding protein and in additional (often nearby) proteins, often with LPXTG-like sortase recognition signals. Homologous ATP-binding subunits outside the scope of this family include manganese transporter MntA in Synechocystis sp. PCC 6803 and chelated iron transporter subunits. The function of this transporter complex is unknown.
Probab=99.01 E-value=3e-10 Score=114.78 Aligned_cols=140 Identities=19% Similarity=0.222 Sum_probs=95.5
Q ss_pred eeeccCCcceEEEEECCCCCcHHHHHHHHHHhC-CCceEEEecCcccc--cccccccCCCCCCCc--hhhHHHHHHhhhc
Q 006117 58 LLAQKNHGIILVGVAGPSGAGKTVFTEKVLNFM-PSIAVITMDNYNDS--SRIIDGNFDDPRLTD--YDTLLENIRGLKE 132 (660)
Q Consensus 58 l~i~~ge~~~IIGI~GpSGSGKSTLak~L~~lL-p~~g~I~lDg~~~~--~~~i~~vfq~p~l~d--~~tl~e~L~~L~~ 132 (660)
|.+++|+ ++||+|+||||||||+++|++.+ |+.|.|.+||.... .+.+++++|++.++. ..++.+++.....
T Consensus 1 l~i~~Ge---~~~l~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~i~~v~q~~~~~~~~~~tv~~~l~~~~~ 77 (223)
T TIGR03771 1 LSADKGE---LLGLLGPNGAGKTTLLRAILGLIPPAKGTVKVAGASPGKGWRHIGYVPQRHEFAWDFPISVAHTVMSGRT 77 (223)
T ss_pred CccCCCc---EEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCccchHhhCcEEEecccccccCCCCccHHHHHHhccc
Confidence 4577899 99999999999999999999998 78999999997432 245789999886532 2567776642100
Q ss_pred --------Cc------------cccc-ccccccccccccceeeecCCccEEEEecceeecccccCCCCEEEEEEcChhHH
Q 006117 133 --------GK------------AVQV-PIYDFKSSSRIGYRTLEVPSSRIVIIEGIYALSEKLRPLIDLRVSVTGGVHFD 191 (660)
Q Consensus 133 --------Gk------------~I~~-PiyD~s~~~rs~~~~~~v~~a~VVIVEGilaL~deLr~llDlkIfVdad~dir 191 (660)
.. .+.. +..+......++++.+++..++.++.++.+++.||+...+|. ....
T Consensus 78 ~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~laral~~~p~llilDEP~~~LD~-------~~~~ 150 (223)
T TIGR03771 78 GHIGWLRRPCVADFAAVRDALRRVGLTELADRPVGELSGGQRQRVLVARALATRPSVLLLDEPFTGLDM-------PTQE 150 (223)
T ss_pred cccccccCCcHHHHHHHHHHHHHhCCchhhcCChhhCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCH-------HHHH
Confidence 00 0000 112223334555677778888899999999999999999997 3333
Q ss_pred HHHHHHHHHHHhCCCH
Q 006117 192 LVKRVFRDIQRVGQEP 207 (660)
Q Consensus 192 LiRRI~RDv~eRGrs~ 207 (660)
.+..+.+++.+.|.+.
T Consensus 151 ~l~~~l~~~~~~~~tv 166 (223)
T TIGR03771 151 LLTELFIELAGAGTAI 166 (223)
T ss_pred HHHHHHHHHHHcCCEE
Confidence 4444455554445543
No 384
>cd03291 ABCC_CFTR1 The CFTR subfamily domain 1. The cystic fibrosis transmembrane regulator (CFTR), the product of the gene mutated in patients with cystic fibrosis, has adapted the ABC transporter structural motif to form a tightly regulated anion channel at the apical surface of many epithelia. Use of the term assembly of a functional ion channel implies the coming together of subunits, or at least smaller not-yet functional components of the active whole. In fact, on the basis of current knowledge only the CFTR polypeptide itself is required to form an ATP- and protein kinase A-dependent low-conductance chloride channel of the type present in the apical membrane of many epithelial cells. CFTR displays the typical organization (IM-ABC)2 and carries a characteristic hydrophilic R-domain that separates IM1-ABC1 from IM2-ABC2.
Probab=99.01 E-value=1.8e-10 Score=121.25 Aligned_cols=128 Identities=19% Similarity=0.166 Sum_probs=93.5
Q ss_pred ceeeeecCceEEEEecceeeccCCcceEEEEECCCCCcHHHHHHHHHHhC-CCceEEEecCcccccccccccCCCCCCCc
Q 006117 41 DTLSFEKGFFIVIRACQLLAQKNHGIILVGVAGPSGAGKTVFTEKVLNFM-PSIAVITMDNYNDSSRIIDGNFDDPRLTD 119 (660)
Q Consensus 41 ~~ls~~~g~~~vL~~Isl~i~~ge~~~IIGI~GpSGSGKSTLak~L~~lL-p~~g~I~lDg~~~~~~~i~~vfq~p~l~d 119 (660)
+.+++. ...++++++|.+++|+ ++||+|+||||||||+++|++++ |..|.|.+++ .+++++|++.+++
T Consensus 43 ~nls~~--~~~vL~~vs~~i~~Ge---~~~liG~NGsGKSTLl~~I~Gl~~p~~G~I~i~g------~i~yv~q~~~l~~ 111 (282)
T cd03291 43 SNLCLV--GAPVLKNINLKIEKGE---MLAITGSTGSGKTSLLMLILGELEPSEGKIKHSG------RISFSSQFSWIMP 111 (282)
T ss_pred EEEEEe--cccceeeeeEEEcCCC---EEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECC------EEEEEeCcccccc
Confidence 444443 2469999999999999 99999999999999999999998 7899999987 3678888887766
Q ss_pred hhhHHHHHHhhhc-Cc----------ccc-----ccc-----ccccccccccceeeecCCccEEEEecceeecccccCCC
Q 006117 120 YDTLLENIRGLKE-GK----------AVQ-----VPI-----YDFKSSSRIGYRTLEVPSSRIVIIEGIYALSEKLRPLI 178 (660)
Q Consensus 120 ~~tl~e~L~~L~~-Gk----------~I~-----~Pi-----yD~s~~~rs~~~~~~v~~a~VVIVEGilaL~deLr~ll 178 (660)
. ++.+++..... .. .+. .|. .+......++++.+++..++.++.++.+++.||+...+
T Consensus 112 ~-tv~enl~~~~~~~~~~~~~~l~~~~l~~~l~~~~~~~~~~~~~~~~~LSgGq~qrv~lAraL~~~p~iLiLDEPt~gL 190 (282)
T cd03291 112 G-TIKENIIFGVSYDEYRYKSVVKACQLEEDITKFPEKDNTVLGEGGITLSGGQRARISLARAVYKDADLYLLDSPFGYL 190 (282)
T ss_pred c-CHHHHhhcccccCHHHHHHHHHHhCCHHHHHhccccccceecCCCCcCCHHHHHHHHHHHHHhcCCCEEEEECCCccC
Confidence 3 77777643110 00 000 010 00111244556777788888899999999999999999
Q ss_pred CE
Q 006117 179 DL 180 (660)
Q Consensus 179 Dl 180 (660)
|.
T Consensus 191 D~ 192 (282)
T cd03291 191 DV 192 (282)
T ss_pred CH
Confidence 96
No 385
>TIGR00956 3a01205 Pleiotropic Drug Resistance (PDR) Family protein.
Probab=98.99 E-value=7.2e-10 Score=138.40 Aligned_cols=155 Identities=14% Similarity=0.072 Sum_probs=111.6
Q ss_pred CceEEEEecceeeccCCcceEEEEECCCCCcHHHHHHHHHHhCC----CceEEEecCcccc---cccccccCCCCCCCch
Q 006117 48 GFFIVIRACQLLAQKNHGIILVGVAGPSGAGKTVFTEKVLNFMP----SIAVITMDNYNDS---SRIIDGNFDDPRLTDY 120 (660)
Q Consensus 48 g~~~vL~~Isl~i~~ge~~~IIGI~GpSGSGKSTLak~L~~lLp----~~g~I~lDg~~~~---~~~i~~vfq~p~l~d~ 120 (660)
+...+|++|++.+++|+ ++||+||||||||||+++|++..+ ..|.|.+||.... .+.+++++|++.+++.
T Consensus 774 ~~~~iL~~vs~~i~~Ge---~~aI~G~sGaGKSTLL~~Lag~~~~g~~~~G~I~i~G~~~~~~~~~~i~yv~Q~~~~~~~ 850 (1394)
T TIGR00956 774 EKRVILNNVDGWVKPGT---LTALMGASGAGKTTLLNVLAERVTTGVITGGDRLVNGRPLDSSFQRSIGYVQQQDLHLPT 850 (1394)
T ss_pred CCcEeeeCCEEEEECCE---EEEEECCCCCCHHHHHHHHhCCCCCCCcceeEEEECCEECChhhhcceeeecccccCCCC
Confidence 34679999999999999 999999999999999999999973 5699999997542 2457899999888888
Q ss_pred hhHHHHHHhh---hcCccc----------------cc-cccccccc----ccccceeeecCCccEEEEecc-eeeccccc
Q 006117 121 DTLLENIRGL---KEGKAV----------------QV-PIYDFKSS----SRIGYRTLEVPSSRIVIIEGI-YALSEKLR 175 (660)
Q Consensus 121 ~tl~e~L~~L---~~Gk~I----------------~~-PiyD~s~~----~rs~~~~~~v~~a~VVIVEGi-laL~deLr 175 (660)
.+++|+|... +..... .. +..|...+ ..+++++.++..+..++.++. +++.||+.
T Consensus 851 ~Tv~E~L~~~a~l~~~~~~~~~~~~~~v~~~l~~l~L~~~~d~~v~~~~~~LSgGqrqRl~Ia~aL~~~P~~iLlLDEPT 930 (1394)
T TIGR00956 851 STVRESLRFSAYLRQPKSVSKSEKMEYVEEVIKLLEMESYADAVVGVPGEGLNVEQRKRLTIGVELVAKPKLLLFLDEPT 930 (1394)
T ss_pred CCHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHHHcCChhhCCCeeCCCCCCCCHHHhhHHHHHHHHHcCCCeEEEEcCCC
Confidence 9999998742 111000 00 11222222 345567777888888888884 88889999
Q ss_pred CCCCEEEEEEcChhHHHHHHHHHHHHHhCCCHHHHHH
Q 006117 176 PLIDLRVSVTGGVHFDLVKRVFRDIQRVGQEPEEIIH 212 (660)
Q Consensus 176 ~llDlkIfVdad~dirLiRRI~RDv~eRGrs~E~Vl~ 212 (660)
..+|. .....+.++.+.....|++.--+.|
T Consensus 931 sgLD~-------~~~~~i~~~L~~la~~g~tvI~t~H 960 (1394)
T TIGR00956 931 SGLDS-------QTAWSICKLMRKLADHGQAILCTIH 960 (1394)
T ss_pred CCCCH-------HHHHHHHHHHHHHHHcCCEEEEEec
Confidence 99997 3334455555555555665433333
No 386
>PTZ00243 ABC transporter; Provisional
Probab=98.99 E-value=2.2e-10 Score=144.29 Aligned_cols=136 Identities=18% Similarity=0.213 Sum_probs=102.8
Q ss_pred ceeeeec--CceEEEEecceeeccCCcceEEEEECCCCCcHHHHHHHHHHhC-CCceEEEecCccccc-------ccccc
Q 006117 41 DTLSFEK--GFFIVIRACQLLAQKNHGIILVGVAGPSGAGKTVFTEKVLNFM-PSIAVITMDNYNDSS-------RIIDG 110 (660)
Q Consensus 41 ~~ls~~~--g~~~vL~~Isl~i~~ge~~~IIGI~GpSGSGKSTLak~L~~lL-p~~g~I~lDg~~~~~-------~~i~~ 110 (660)
++++|.| +...+|++++|.+++|+ .|||+|++|||||||++.|.+++ |..|.|.+||.+... +.+++
T Consensus 1312 ~nVsf~Y~~~~~~vL~~vsf~I~~Ge---kVaIVGrTGSGKSTLl~lLlrl~~p~~G~I~IDG~di~~i~l~~LR~~I~i 1388 (1560)
T PTZ00243 1312 EGVQMRYREGLPLVLRGVSFRIAPRE---KVGIVGRTGSGKSTLLLTFMRMVEVCGGEIRVNGREIGAYGLRELRRQFSM 1388 (1560)
T ss_pred EEEEEEeCCCCCceeecceEEECCCC---EEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEEcccCCHHHHHhcceE
Confidence 4455554 33469999999999999 99999999999999999999998 889999999986432 56899
Q ss_pred cCCCCCCCchhhHHHHHHhhhcC---------------ccc-ccc-ccccccc----ccccceeeecCCccEEEEe-cce
Q 006117 111 NFDDPRLTDYDTLLENIRGLKEG---------------KAV-QVP-IYDFKSS----SRIGYRTLEVPSSRIVIIE-GIY 168 (660)
Q Consensus 111 vfq~p~l~d~~tl~e~L~~L~~G---------------k~I-~~P-iyD~s~~----~rs~~~~~~v~~a~VVIVE-Gil 168 (660)
++|+|.+|+ .++++||.....- +.+ ..| -||-..+ ..++++.+.+..++.++-+ ..+
T Consensus 1389 VpQdp~LF~-gTIreNIdp~~~~sdeeI~~Al~~a~l~~~I~~lp~Gldt~vge~G~nLSgGQrQrLaLARALL~~~~~I 1467 (1560)
T PTZ00243 1389 IPQDPVLFD-GTVRQNVDPFLEASSAEVWAALELVGLRERVASESEGIDSRVLEGGSNYSVGQRQLMCMARALLKKGSGF 1467 (1560)
T ss_pred ECCCCcccc-ccHHHHhCcccCCCHHHHHHHHHHCCChHHHhhCcccccccccCCcCcCCHHHHHHHHHHHHHhcCCCCE
Confidence 999999998 4999998643210 001 012 2333222 3456788888888988885 577
Q ss_pred eecccccCCCCE
Q 006117 169 ALSEKLRPLIDL 180 (660)
Q Consensus 169 aL~deLr~llDl 180 (660)
++.||....+|.
T Consensus 1468 LlLDEATSaLD~ 1479 (1560)
T PTZ00243 1468 ILMDEATANIDP 1479 (1560)
T ss_pred EEEeCCCccCCH
Confidence 788999988886
No 387
>TIGR00955 3a01204 The Eye Pigment Precursor Transporter (EPP) Family protein.
Probab=98.99 E-value=5e-10 Score=129.47 Aligned_cols=151 Identities=13% Similarity=0.089 Sum_probs=110.0
Q ss_pred cCceEEEEecceeeccCCcceEEEEECCCCCcHHHHHHHHHHhC-CC---ceEEEecCcccc----cccccccCCCCCCC
Q 006117 47 KGFFIVIRACQLLAQKNHGIILVGVAGPSGAGKTVFTEKVLNFM-PS---IAVITMDNYNDS----SRIIDGNFDDPRLT 118 (660)
Q Consensus 47 ~g~~~vL~~Isl~i~~ge~~~IIGI~GpSGSGKSTLak~L~~lL-p~---~g~I~lDg~~~~----~~~i~~vfq~p~l~ 118 (660)
++...+|+++++.+++|+ +++|+||||||||||+++|++.. ++ .|.|.++|.... .+.+++++|++.++
T Consensus 35 ~~~~~iL~~vs~~i~~Ge---~~aI~G~sGsGKSTLL~~L~g~~~~~~~~~G~i~~~g~~~~~~~~~~~i~yv~Q~~~~~ 111 (617)
T TIGR00955 35 RPRKHLLKNVSGVAKPGE---LLAVMGSSGAGKTTLMNALAFRSPKGVKGSGSVLLNGMPIDAKEMRAISAYVQQDDLFI 111 (617)
T ss_pred cCccccccCCEEEEeCCe---EEEEECCCCCCHHHHHHHHhCCCCCCCcceeEEEECCEECCHHHHhhhceeeccccccC
Confidence 345679999999999999 99999999999999999999987 43 699999997543 24578999999999
Q ss_pred chhhHHHHHHhhhc---Ccc----------------ccc-cccccccc------ccccceeeecCCccEEEEecceeecc
Q 006117 119 DYDTLLENIRGLKE---GKA----------------VQV-PIYDFKSS------SRIGYRTLEVPSSRIVIIEGIYALSE 172 (660)
Q Consensus 119 d~~tl~e~L~~L~~---Gk~----------------I~~-PiyD~s~~------~rs~~~~~~v~~a~VVIVEGilaL~d 172 (660)
+..++.|++..... ... ... +..|...+ ..+++++.++..+..++-++.+++.|
T Consensus 112 ~~lTV~e~l~f~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~t~vg~~~~~~~LSgGqrkRvsia~aL~~~p~vlllD 191 (617)
T TIGR00955 112 PTLTVREHLMFQAHLRMPRRVTKKEKRERVDEVLQALGLRKCANTRIGVPGRVKGLSGGERKRLAFASELLTDPPLLFCD 191 (617)
T ss_pred ccCcHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHHcCchhcCcCccCCCCCCCCcCcchhhHHHHHHHHHcCCCEEEee
Confidence 99999999863211 000 000 11222222 25567788888888899999999999
Q ss_pred cccCCCCEEEEEEcChhHHHHHHHHHHHHHhCCCH
Q 006117 173 KLRPLIDLRVSVTGGVHFDLVKRVFRDIQRVGQEP 207 (660)
Q Consensus 173 eLr~llDlkIfVdad~dirLiRRI~RDv~eRGrs~ 207 (660)
|+...+|. .....+.+..++....|++.
T Consensus 192 EPtsgLD~-------~~~~~l~~~L~~l~~~g~tv 219 (617)
T TIGR00955 192 EPTSGLDS-------FMAYSVVQVLKGLAQKGKTI 219 (617)
T ss_pred CCCcchhH-------HHHHHHHHHHHHHHhCCCEE
Confidence 99999997 22333444445555456553
No 388
>COG4778 PhnL ABC-type phosphonate transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=98.99 E-value=1.8e-09 Score=105.58 Aligned_cols=163 Identities=17% Similarity=0.202 Sum_probs=112.0
Q ss_pred eeeeccceeeee--cCc-eEEEEecceeeccCCcceEEEEECCCCCcHHHHHHHHHHhC-CCceEEEecCcc----c---
Q 006117 35 EIVPIEDTLSFE--KGF-FIVIRACQLLAQKNHGIILVGVAGPSGAGKTVFTEKVLNFM-PSIAVITMDNYN----D--- 103 (660)
Q Consensus 35 ei~~~~~~ls~~--~g~-~~vL~~Isl~i~~ge~~~IIGI~GpSGSGKSTLak~L~~lL-p~~g~I~lDg~~----~--- 103 (660)
....+.++|... .|. ..++++++|.++.|+ .+.+-|||||||||++++|.+.+ |+.|.|.+.... .
T Consensus 6 ~v~~~~KtFtlH~q~Gi~LpV~~~vslsV~aGE---CvvL~G~SG~GKStllr~LYaNY~~d~G~I~v~H~g~~vdl~~a 82 (235)
T COG4778 6 NVSNVSKTFTLHQQGGVRLPVLRNVSLSVNAGE---CVVLHGPSGSGKSTLLRSLYANYLPDEGQILVRHEGEWVDLVTA 82 (235)
T ss_pred eeecchhheEeeecCCEEeeeeeceeEEecCcc---EEEeeCCCCCcHHHHHHHHHhccCCCCceEEEEeCcchhhhhcc
Confidence 334555655443 232 369999999999999 99999999999999999999997 888888764321 0
Q ss_pred --------ccccccccCCCCCCCchhhHHHHHH------------------hhhcCcccccccccccccccccceeeecC
Q 006117 104 --------SSRIIDGNFDDPRLTDYDTLLENIR------------------GLKEGKAVQVPIYDFKSSSRIGYRTLEVP 157 (660)
Q Consensus 104 --------~~~~i~~vfq~p~l~d~~tl~e~L~------------------~L~~Gk~I~~PiyD~s~~~rs~~~~~~v~ 157 (660)
..+.++|+-|.-...+.-...+.+. .|...-.+....++....+.++++++++.
T Consensus 83 ~pr~vl~vRr~TiGyVSQFLRviPRV~aLdVvaePll~~gv~~~~a~~~a~~Ll~rLnlperLW~LaPaTFSGGEqQRVN 162 (235)
T COG4778 83 EPREVLEVRRTTIGYVSQFLRVIPRVSALDVVAEPLLARGVPREVARAKAADLLTRLNLPERLWSLAPATFSGGEQQRVN 162 (235)
T ss_pred ChHHHHHHHHhhhHHHHHHHHhccCcchHHHHHhHHHHcCCCHHHHHHHHHHHHHHcCCCHHHhcCCCcccCCchheehh
Confidence 1134677766544333333333332 12111122223566667788888999999
Q ss_pred CccEEEEecceeecccccCCCCEEEEEEcChhHHHHHHHHHHHHHhCCCH
Q 006117 158 SSRIVIIEGIYALSEKLRPLIDLRVSVTGGVHFDLVKRVFRDIQRVGQEP 207 (660)
Q Consensus 158 ~a~VVIVEGilaL~deLr~llDlkIfVdad~dirLiRRI~RDv~eRGrs~ 207 (660)
.++-+|+|-+.++.||+...+|.+ .....-.+.+..+.+|-..
T Consensus 163 IaRgfivd~pILLLDEPTasLDa~-------Nr~vVveli~e~Ka~GaAl 205 (235)
T COG4778 163 IARGFIVDYPILLLDEPTASLDAT-------NRAVVVELIREAKARGAAL 205 (235)
T ss_pred hhhhhhccCceEEecCCccccccc-------chHHHHHHHHHHHhcCceE
Confidence 999999999999999999999973 2333445666777777654
No 389
>TIGR00954 3a01203 Peroxysomal Fatty Acyl CoA Transporter (FAT) Family protei.
Probab=98.98 E-value=5.5e-10 Score=130.08 Aligned_cols=133 Identities=13% Similarity=0.102 Sum_probs=99.7
Q ss_pred cceeeeec-CceEEEEecceeeccCCcceEEEEECCCCCcHHHHHHHHHHhC-CCceEEEecCcccccccccccCCCCCC
Q 006117 40 EDTLSFEK-GFFIVIRACQLLAQKNHGIILVGVAGPSGAGKTVFTEKVLNFM-PSIAVITMDNYNDSSRIIDGNFDDPRL 117 (660)
Q Consensus 40 ~~~ls~~~-g~~~vL~~Isl~i~~ge~~~IIGI~GpSGSGKSTLak~L~~lL-p~~g~I~lDg~~~~~~~i~~vfq~p~l 117 (660)
.+++++.+ +...++++++|.+++|+ +++|+||||||||||+++|++++ |..|.|..++ ...+++++|+|.+
T Consensus 454 ~~nv~~~~~~~~~il~~isl~i~~Ge---~~~IvG~nGsGKSTLl~lL~Gl~~~~~G~i~~~~----~~~i~~v~Q~~~l 526 (659)
T TIGR00954 454 FENIPLVTPNGDVLIESLSFEVPSGN---HLLICGPNGCGKSSLFRILGELWPVYGGRLTKPA----KGKLFYVPQRPYM 526 (659)
T ss_pred EEeeEEECCCCCeeeecceEEECCCC---EEEEECCCCCCHHHHHHHHhCCCCCCCCeEeecC----CCcEEEECCCCCC
Confidence 34555544 23479999999999999 99999999999999999999998 6788888764 3457899999988
Q ss_pred CchhhHHHHHHhhh-------cC---cc-------------ccccc-ccc---cccccccceeeecCCccEEEEecceee
Q 006117 118 TDYDTLLENIRGLK-------EG---KA-------------VQVPI-YDF---KSSSRIGYRTLEVPSSRIVIIEGIYAL 170 (660)
Q Consensus 118 ~d~~tl~e~L~~L~-------~G---k~-------------I~~Pi-yD~---s~~~rs~~~~~~v~~a~VVIVEGilaL 170 (660)
++. ++.+++..-. .+ +. +..|. ||. ..+..++++.+++..++.++-++.+++
T Consensus 527 ~~~-tv~eni~~~~~~~~~~~~~~~~~~i~~~l~~~~l~~~~~~~~g~~~~~~~~~~LSgGqkQRl~iARal~~~p~ill 605 (659)
T TIGR00954 527 TLG-TLRDQIIYPDSSEDMKRRGLSDKDLEQILDNVQLTHILEREGGWSAVQDWMDVLSGGEKQRIAMARLFYHKPQFAI 605 (659)
T ss_pred CCc-CHHHHHhcCCChhhhhccCCCHHHHHHHHHHcCCHHHHhhcCCcccccccccCCCHHHHHHHHHHHHHHcCCCEEE
Confidence 775 8888875321 00 00 00010 110 113456778888899999999999999
Q ss_pred cccccCCCCE
Q 006117 171 SEKLRPLIDL 180 (660)
Q Consensus 171 ~deLr~llDl 180 (660)
.||+...+|.
T Consensus 606 LDEpts~LD~ 615 (659)
T TIGR00954 606 LDECTSAVSV 615 (659)
T ss_pred EeCCccCCCH
Confidence 9999999997
No 390
>TIGR00957 MRP_assoc_pro multi drug resistance-associated protein (MRP). This model describes multi drug resistance-associated protein (MRP) in eukaryotes. The multidrug resistance-associated protein is an integral membrane protein that causes multidrug resistance when overexpressed in mammalian cells. It belongs to ABC transporter superfamily. The protein topology and function was experimentally demonstrated by epitope tagging and immunofluorescence. Insertion of tags in the critical regions associated with drug efflux, abrogated its function. The C-terminal domain seem to highly conserved.
Probab=98.98 E-value=1.9e-10 Score=144.71 Aligned_cols=136 Identities=19% Similarity=0.208 Sum_probs=105.3
Q ss_pred ceeeeecC--ceEEEEecceeeccCCcceEEEEECCCCCcHHHHHHHHHHhC-CCceEEEecCccccc-------ccccc
Q 006117 41 DTLSFEKG--FFIVIRACQLLAQKNHGIILVGVAGPSGAGKTVFTEKVLNFM-PSIAVITMDNYNDSS-------RIIDG 110 (660)
Q Consensus 41 ~~ls~~~g--~~~vL~~Isl~i~~ge~~~IIGI~GpSGSGKSTLak~L~~lL-p~~g~I~lDg~~~~~-------~~i~~ 110 (660)
+++++.|. ...+|+++||.+++|+ .|||+|++|||||||++.|.+++ |..|.|.+||.+... +.+++
T Consensus 1288 ~nVsf~Y~~~~~~vL~~is~~I~~Ge---kiaIVGrTGsGKSTL~~lL~rl~~~~~G~I~IdG~dI~~i~~~~LR~~i~i 1364 (1522)
T TIGR00957 1288 RNYCLRYREDLDLVLRHINVTIHGGE---KVGIVGRTGAGKSSLTLGLFRINESAEGEIIIDGLNIAKIGLHDLRFKITI 1364 (1522)
T ss_pred EEEEEEeCCCCcccccceeEEEcCCC---EEEEECCCCCCHHHHHHHHhcCccCCCCeEEECCEEccccCHHHHHhcCeE
Confidence 44555553 2469999999999999 99999999999999999999998 889999999986542 45889
Q ss_pred cCCCCCCCchhhHHHHHHhhhcC---------------ccc-ccc-ccccccc----ccccceeeecCCccEEEEeccee
Q 006117 111 NFDDPRLTDYDTLLENIRGLKEG---------------KAV-QVP-IYDFKSS----SRIGYRTLEVPSSRIVIIEGIYA 169 (660)
Q Consensus 111 vfq~p~l~d~~tl~e~L~~L~~G---------------k~I-~~P-iyD~s~~----~rs~~~~~~v~~a~VVIVEGila 169 (660)
++|+|.+|+ .++++||.....- +.+ ..| .||...+ ..++++.+.+..++.++-++..+
T Consensus 1365 VpQdp~LF~-gTIr~NLdp~~~~sdeei~~al~~a~l~~~I~~lp~GLdt~v~e~G~~LSgGQrQrl~LARALLr~~~IL 1443 (1522)
T TIGR00957 1365 IPQDPVLFS-GSLRMNLDPFSQYSDEEVWWALELAHLKTFVSALPDKLDHECAEGGENLSVGQRQLVCLARALLRKTKIL 1443 (1522)
T ss_pred ECCCCcccC-ccHHHHcCcccCCCHHHHHHHHHHcCcHHHHhhCccCCCceecCCCCcCCHHHHHHHHHHHHHHcCCCEE
Confidence 999999998 4899998632110 001 111 2343332 24567888899999999999999
Q ss_pred ecccccCCCCE
Q 006117 170 LSEKLRPLIDL 180 (660)
Q Consensus 170 L~deLr~llDl 180 (660)
+.||....+|.
T Consensus 1444 iLDEaTSalD~ 1454 (1522)
T TIGR00957 1444 VLDEATAAVDL 1454 (1522)
T ss_pred EEECCcccCCH
Confidence 99999999987
No 391
>PRK11147 ABC transporter ATPase component; Reviewed
Probab=98.95 E-value=1.1e-09 Score=127.03 Aligned_cols=135 Identities=14% Similarity=0.066 Sum_probs=89.5
Q ss_pred cceeeeecCceEEEEecceeeccCCcceEEEEECCCCCcHHHHHHHHHHhC-CCceEEEecCccc----c----cccccc
Q 006117 40 EDTLSFEKGFFIVIRACQLLAQKNHGIILVGVAGPSGAGKTVFTEKVLNFM-PSIAVITMDNYND----S----SRIIDG 110 (660)
Q Consensus 40 ~~~ls~~~g~~~vL~~Isl~i~~ge~~~IIGI~GpSGSGKSTLak~L~~lL-p~~g~I~lDg~~~----~----~~~i~~ 110 (660)
.+++++.++...++++++|.+++|+ ++||+|+||||||||+++|++.+ |+.|.|.+++... . .....+
T Consensus 6 i~~ls~~~~~~~il~~is~~i~~Ge---~v~LvG~NGsGKSTLLriiaG~~~p~~G~I~~~~~~~~~~l~q~~~~~~~~~ 82 (635)
T PRK11147 6 IHGAWLSFSDAPLLDNAELHIEDNE---RVCLVGRNGAGKSTLMKILNGEVLLDDGRIIYEQDLIVARLQQDPPRNVEGT 82 (635)
T ss_pred EeeEEEEeCCceeEeCcEEEECCCC---EEEEECCCCCCHHHHHHHHcCCCCCCCeEEEeCCCCEEEEeccCCCCCCCCC
Confidence 4556666677789999999999999 99999999999999999999998 7899999876310 0 001112
Q ss_pred cCCCCC-----CCchhh-------------HHHHHH----------------------hhhcCccccccccccccccccc
Q 006117 111 NFDDPR-----LTDYDT-------------LLENIR----------------------GLKEGKAVQVPIYDFKSSSRIG 150 (660)
Q Consensus 111 vfq~p~-----l~d~~t-------------l~e~L~----------------------~L~~Gk~I~~PiyD~s~~~rs~ 150 (660)
+++... .++... ..+++. .+..+ +... .+...+..++
T Consensus 83 v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~--lgl~-~~~~~~~LSg 159 (635)
T PRK11147 83 VYDFVAEGIEEQAEYLKRYHDISHLVETDPSEKNLNELAKLQEQLDHHNLWQLENRINEVLAQ--LGLD-PDAALSSLSG 159 (635)
T ss_pred HHHHHHHhhHHHHHHHHHHHHHHHHhccCchHHHHHHHHHHHHHHHhcCcccHHHHHHHHHHh--CCCC-CCCchhhcCH
Confidence 222100 000000 001111 00000 0111 1344456677
Q ss_pred ceeeecCCccEEEEecceeecccccCCCCE
Q 006117 151 YRTLEVPSSRIVIIEGIYALSEKLRPLIDL 180 (660)
Q Consensus 151 ~~~~~v~~a~VVIVEGilaL~deLr~llDl 180 (660)
++..++..++.++.++.+++.||+.+.+|.
T Consensus 160 GekqRv~LAraL~~~P~lLLLDEPt~~LD~ 189 (635)
T PRK11147 160 GWLRKAALGRALVSNPDVLLLDEPTNHLDI 189 (635)
T ss_pred HHHHHHHHHHHHhcCCCEEEEcCCCCccCH
Confidence 888889999999999999999999999997
No 392
>cd03238 ABC_UvrA The excision repair protein UvrA; Nucleotide excision repair in eubacteria is a process that repairs DNA damage by the removal of a 12-13-mer oligonucleotide containing the lesion. Recognition and cleavage of the damaged DNA is a multistep ATP-dependent reaction that requires the UvrA, UvrB, and UvrC proteins. Both UvrA and UvrB are ATPases, with UvrA having two ATP binding sites, which have the characteristic signature of the family of ABC proteins, and UvrB having one ATP binding site that is structurally related to that of helicases.
Probab=98.94 E-value=6.6e-10 Score=109.39 Aligned_cols=132 Identities=15% Similarity=0.100 Sum_probs=85.3
Q ss_pred ceEEEEecceeeccCCcceEEEEECCCCCcHHHHHHHHHHhCCCceEEEecCcccc--cccccccCCCCCCCchhhHHHH
Q 006117 49 FFIVIRACQLLAQKNHGIILVGVAGPSGAGKTVFTEKVLNFMPSIAVITMDNYNDS--SRIIDGNFDDPRLTDYDTLLEN 126 (660)
Q Consensus 49 ~~~vL~~Isl~i~~ge~~~IIGI~GpSGSGKSTLak~L~~lLp~~g~I~lDg~~~~--~~~i~~vfq~p~l~d~~tl~e~ 126 (660)
...+++++||.+++|+ +++|+||||||||||++++. +..|.+.+++.... ...+.+++| .+.
T Consensus 7 ~~~~l~~isl~i~~G~---~~~l~G~nG~GKSTLl~~il---~~~G~v~~~~~~~~~~~~~~~~~~q----------~~~ 70 (176)
T cd03238 7 NVHNLQNLDVSIPLNV---LVVVTGVSGSGKSTLVNEGL---YASGKARLISFLPKFSRNKLIFIDQ----------LQF 70 (176)
T ss_pred eeeeecceEEEEcCCC---EEEEECCCCCCHHHHHHHHh---hcCCcEEECCcccccccccEEEEhH----------HHH
Confidence 4578999999999999 99999999999999999884 35777777765211 112334433 233
Q ss_pred HHhhhcCcccccccccccccccccceeeecCCccEEEEe--cceeecccccCCCCEEEEEEcChhHHHHHHHHHHHHHhC
Q 006117 127 IRGLKEGKAVQVPIYDFKSSSRIGYRTLEVPSSRIVIIE--GIYALSEKLRPLIDLRVSVTGGVHFDLVKRVFRDIQRVG 204 (660)
Q Consensus 127 L~~L~~Gk~I~~PiyD~s~~~rs~~~~~~v~~a~VVIVE--GilaL~deLr~llDlkIfVdad~dirLiRRI~RDv~eRG 204 (660)
+..+.-+.. ..+......++++..++..++.++.+ +.+++.||+...+|. ...+.+.++.++..++|
T Consensus 71 l~~~~L~~~----~~~~~~~~LSgGq~qrl~laral~~~~~p~llLlDEPt~~LD~-------~~~~~l~~~l~~~~~~g 139 (176)
T cd03238 71 LIDVGLGYL----TLGQKLSTLSGGELQRVKLASELFSEPPGTLFILDEPSTGLHQ-------QDINQLLEVIKGLIDLG 139 (176)
T ss_pred HHHcCCCcc----ccCCCcCcCCHHHHHHHHHHHHHhhCCCCCEEEEeCCcccCCH-------HHHHHHHHHHHHHHhCC
Confidence 333221110 12223334455566677777788888 888888999999987 33444444555544445
Q ss_pred CCH
Q 006117 205 QEP 207 (660)
Q Consensus 205 rs~ 207 (660)
.+.
T Consensus 140 ~tv 142 (176)
T cd03238 140 NTV 142 (176)
T ss_pred CEE
Confidence 543
No 393
>TIGR01187 potA spermidine/putrescine ABC transporter ATP-binding subunit. This model describes spermidine/putrescine ABC transporter, ATP binding subunit in bacteria and its equivalents in archaea. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporter is the obligatory coupling of ATP hydrolysis to substrate translocation. The minimal configuration of bacterial ABC transport system: an ATPase or ATP binding subunit; An integral membrane protein; a hydrophilic polypetpide, which likely functions as substrate binding protein. Polyamines like spermidine and putrescine play vital role in cell proliferation, differentiation, and ion homeostasis. The concentration of polyamines within the cell are regulated by biosynthesis, degradation and transport (uptake and efflux included).
Probab=98.93 E-value=4.3e-10 Score=120.34 Aligned_cols=110 Identities=25% Similarity=0.244 Sum_probs=85.2
Q ss_pred EECCCCCcHHHHHHHHHHhC-CCceEEEecCcccc-----cccccccCCCCCCCchhhHHHHHHhhhc--Cc-------c
Q 006117 71 VAGPSGAGKTVFTEKVLNFM-PSIAVITMDNYNDS-----SRIIDGNFDDPRLTDYDTLLENIRGLKE--GK-------A 135 (660)
Q Consensus 71 I~GpSGSGKSTLak~L~~lL-p~~g~I~lDg~~~~-----~~~i~~vfq~p~l~d~~tl~e~L~~L~~--Gk-------~ 135 (660)
|+|+||||||||+++|++++ |+.|.|.++|.... .+.++++||++.+|+..++.+++..... +. .
T Consensus 1 l~G~nGsGKSTLl~~iaGl~~p~~G~I~i~g~~i~~~~~~~~~i~~v~q~~~l~~~~tv~enl~~~~~~~~~~~~~~~~~ 80 (325)
T TIGR01187 1 LLGPSGCGKTTLLRLLAGFEQPDSGSIMLDGEDVTNVPPHLRHINMVFQSYALFPHMTVEENVAFGLKMRKVPRAEIKPR 80 (325)
T ss_pred CcCCCCCCHHHHHHHHHCCCCCCceEEEECCEECCCCCHHHCCEEEEecCccccCCCcHHHHHHHHHhhcCCCHHHHHHH
Confidence 57999999999999999998 78999999996532 2457899999999999999999864211 10 0
Q ss_pred -------ccc-ccccccccccccceeeecCCccEEEEecceeecccccCCCCE
Q 006117 136 -------VQV-PIYDFKSSSRIGYRTLEVPSSRIVIIEGIYALSEKLRPLIDL 180 (660)
Q Consensus 136 -------I~~-PiyD~s~~~rs~~~~~~v~~a~VVIVEGilaL~deLr~llDl 180 (660)
... +..+...+..++++.+++..++.++.++.+++.||+...+|.
T Consensus 81 ~~~~l~~~~l~~~~~~~~~~LSgGq~qRvalaraL~~~p~lllLDEP~s~LD~ 133 (325)
T TIGR01187 81 VLEALRLVQLEEFADRKPHQLSGGQQQRVALARALVFKPKILLLDEPLSALDK 133 (325)
T ss_pred HHHHHHHcCCcchhcCChhhCCHHHHHHHHHHHHHHhCCCEEEEeCCCccCCH
Confidence 011 112333455667788888889999999999999999999997
No 394
>PRK13409 putative ATPase RIL; Provisional
Probab=98.91 E-value=6.7e-10 Score=127.83 Aligned_cols=161 Identities=15% Similarity=0.215 Sum_probs=107.2
Q ss_pred eeeeecc----ceeeeecCce-EEEEecceeeccCCcceEEEEECCCCCcHHHHHHHHHHhC-CCceEEE----------
Q 006117 34 YEIVPIE----DTLSFEKGFF-IVIRACQLLAQKNHGIILVGVAGPSGAGKTVFTEKVLNFM-PSIAVIT---------- 97 (660)
Q Consensus 34 ~ei~~~~----~~ls~~~g~~-~vL~~Isl~i~~ge~~~IIGI~GpSGSGKSTLak~L~~lL-p~~g~I~---------- 97 (660)
+.|+.++ +.+++.+|.. .+|++++ .+++|+ ++||+||||||||||+++|++.+ |+.|.|.
T Consensus 66 ~~i~~~p~~~~~~~~~~yg~~~~~L~~l~-~i~~Ge---v~gLvG~NGaGKSTLlkiL~G~l~p~~G~i~~~~~~~~~~~ 141 (590)
T PRK13409 66 ISIVNLPEELEEEPVHRYGVNGFKLYGLP-IPKEGK---VTGILGPNGIGKTTAVKILSGELIPNLGDYEEEPSWDEVLK 141 (590)
T ss_pred EEEeeCchhhccCceEEecCCceeEecCC-cCCCCC---EEEEECCCCCCHHHHHHHHhCCccCCCccccCCCcHHHHHH
Confidence 4555544 3466677653 5899999 899999 99999999999999999999998 8899997
Q ss_pred -ecCccccc---------ccccccCC----CCCCCchhhHHHHHHhhhcCc-------cccc-ccccccccccccceeee
Q 006117 98 -MDNYNDSS---------RIIDGNFD----DPRLTDYDTLLENIRGLKEGK-------AVQV-PIYDFKSSSRIGYRTLE 155 (660)
Q Consensus 98 -lDg~~~~~---------~~i~~vfq----~p~l~d~~tl~e~L~~L~~Gk-------~I~~-PiyD~s~~~rs~~~~~~ 155 (660)
++|..... ..+.+.+| .|.++. .++.+++....... .+.. ...+......++++.++
T Consensus 142 ~~~G~~l~~~~~~~~~~~~~~~~~~q~~~~~p~~~~-~tv~e~l~~~~~~~~~~~~l~~l~l~~~~~~~~~~LSgGe~qr 220 (590)
T PRK13409 142 RFRGTELQNYFKKLYNGEIKVVHKPQYVDLIPKVFK-GKVRELLKKVDERGKLDEVVERLGLENILDRDISELSGGELQR 220 (590)
T ss_pred HhCChHHHHHHHHHhccCcceeecccchhhhhhhhc-chHHHHHHhhhHHHHHHHHHHHcCCchhhcCChhhCCHHHHHH
Confidence 66643211 11233333 343332 26666654211000 1111 12345555667778888
Q ss_pred cCCccEEEEecceeecccccCCCCEEEEEEcChhHHHHHHHHHHHHHhCCCH
Q 006117 156 VPSSRIVIIEGIYALSEKLRPLIDLRVSVTGGVHFDLVKRVFRDIQRVGQEP 207 (660)
Q Consensus 156 v~~a~VVIVEGilaL~deLr~llDlkIfVdad~dirLiRRI~RDv~eRGrs~ 207 (660)
+..+.+++.++.+++.||+...+|. .....+.++.+...+ |.+.
T Consensus 221 v~ia~al~~~p~lllLDEPts~LD~-------~~~~~l~~~i~~l~~-g~tv 264 (590)
T PRK13409 221 VAIAAALLRDADFYFFDEPTSYLDI-------RQRLNVARLIRELAE-GKYV 264 (590)
T ss_pred HHHHHHHhcCCCEEEEECCCCCCCH-------HHHHHHHHHHHHHHC-CCEE
Confidence 8888999999999999999999997 344445555555555 6553
No 395
>COG4107 PhnK ABC-type phosphonate transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=98.89 E-value=1.9e-09 Score=105.60 Aligned_cols=136 Identities=15% Similarity=0.119 Sum_probs=96.1
Q ss_pred eeeecCceEEEEecceeeccCCcceEEEEECCCCCcHHHHHHHHHHhC-CCceEEEecCcccc----------------c
Q 006117 43 LSFEKGFFIVIRACQLLAQKNHGIILVGVAGPSGAGKTVFTEKVLNFM-PSIAVITMDNYNDS----------------S 105 (660)
Q Consensus 43 ls~~~g~~~vL~~Isl~i~~ge~~~IIGI~GpSGSGKSTLak~L~~lL-p~~g~I~lDg~~~~----------------~ 105 (660)
++..||.....++|||.+.+|+ +.||+|.||||||||+++|++.+ |+.|.|.++..... .
T Consensus 12 lsk~Yg~~~gc~~vsF~l~PGe---VLgiVGESGSGKtTLL~~is~rl~p~~G~v~Y~~r~~~~~dl~~msEaeRR~L~R 88 (258)
T COG4107 12 LSKLYGPGKGCRDVSFDLYPGE---VLGIVGESGSGKTTLLKCISGRLTPDAGTVTYRMRDGQPRDLYTMSEAERRRLLR 88 (258)
T ss_pred hhhhhCCCcCccccceeecCCc---EEEEEecCCCcHHhHHHHHhcccCCCCCeEEEEcCCCCchhHhhhchHHHHHHhh
Confidence 4444566666799999999999 99999999999999999999998 88999887653211 1
Q ss_pred ccccccCCCCCC--C----chhhHHHHH---------------HhhhcCcccccccccccccccccceeeecCCccEEEE
Q 006117 106 RIIDGNFDDPRL--T----DYDTLLENI---------------RGLKEGKAVQVPIYDFKSSSRIGYRTLEVPSSRIVII 164 (660)
Q Consensus 106 ~~i~~vfq~p~l--~----d~~tl~e~L---------------~~L~~Gk~I~~PiyD~s~~~rs~~~~~~v~~a~VVIV 164 (660)
...+++.|+|.- - ....+.|.+ ..+.+.-.|..-..|......+++..++...++.++.
T Consensus 89 TeWG~VhQnP~DGLRm~VSAG~NiGERlma~G~RHYG~iR~~a~~WL~~VEI~~~RiDD~PrtFSGGMqQRLQiARnLVt 168 (258)
T COG4107 89 TEWGFVHQNPRDGLRMQVSAGGNIGERLMAIGARHYGNIRAEAQDWLEEVEIDLDRIDDLPRTFSGGMQQRLQIARNLVT 168 (258)
T ss_pred hccceeecCccccceeeeccCCccchhHHhhhhhhhhhHHHHHHHHHHhcccCcccccCcccccchHHHHHHHHHHHhcc
Confidence 235777787731 0 001111211 2222223344445666666777777777888889999
Q ss_pred ecceeecccccCCCCEE
Q 006117 165 EGIYALSEKLRPLIDLR 181 (660)
Q Consensus 165 EGilaL~deLr~llDlk 181 (660)
.+-+.|.||+...+|..
T Consensus 169 ~PrLvfMDEPTGGLDVS 185 (258)
T COG4107 169 RPRLVFMDEPTGGLDVS 185 (258)
T ss_pred CCceEEecCCCCCcchh
Confidence 99999999999999973
No 396
>PLN03140 ABC transporter G family member; Provisional
Probab=98.87 E-value=1.8e-09 Score=135.09 Aligned_cols=129 Identities=15% Similarity=0.178 Sum_probs=100.7
Q ss_pred ceEEEEecceeeccCCcceEEEEECCCCCcHHHHHHHHHHhC-CC---ceEEEecCcccc----cccccccCCCCCCCch
Q 006117 49 FFIVIRACQLLAQKNHGIILVGVAGPSGAGKTVFTEKVLNFM-PS---IAVITMDNYNDS----SRIIDGNFDDPRLTDY 120 (660)
Q Consensus 49 ~~~vL~~Isl~i~~ge~~~IIGI~GpSGSGKSTLak~L~~lL-p~---~g~I~lDg~~~~----~~~i~~vfq~p~l~d~ 120 (660)
...+|+++++.+++|+ +++|+||||||||||+++|++.+ |+ .|.|.++|.... .+.++|++|++.+++.
T Consensus 177 ~~~IL~~vs~~i~~Ge---~~~llGpnGSGKSTLLk~LaG~l~~~~~~~G~I~~nG~~~~~~~~~~~i~yv~Q~d~~~~~ 253 (1470)
T PLN03140 177 KLTILKDASGIIKPSR---MTLLLGPPSSGKTTLLLALAGKLDPSLKVSGEITYNGYRLNEFVPRKTSAYISQNDVHVGV 253 (1470)
T ss_pred cceeccCCeEEEeCCe---EEEEEcCCCCCHHHHHHHHhCCCCCCCcceeEEEECCEechhhcccceeEEecccccCCCc
Confidence 4579999999999999 99999999999999999999998 65 899999997532 2457899999999999
Q ss_pred hhHHHHHHhhhc--C--cc------c---c-----cc---------------------------cc-----------ccc
Q 006117 121 DTLLENIRGLKE--G--KA------V---Q-----VP---------------------------IY-----------DFK 144 (660)
Q Consensus 121 ~tl~e~L~~L~~--G--k~------I---~-----~P---------------------------iy-----------D~s 144 (660)
+++.|+|..... + .. . + .| .+ +..
T Consensus 254 lTV~EtL~f~a~~~~~~~~~~~~~~~~~~ek~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~L~~lGL~~~~~t~vg~~~ 333 (1470)
T PLN03140 254 MTVKETLDFSARCQGVGTRYDLLSELARREKDAGIFPEAEVDLFMKATAMEGVKSSLITDYTLKILGLDICKDTIVGDEM 333 (1470)
T ss_pred CcHHHHHHHHHHhcCCCCcccchhhcCHHHHhccCCCchhhHHHHHHhhhhcchhhHHHHHHHHHcCCccccCceeCCcc
Confidence 999999864211 1 00 0 0 00 00 111
Q ss_pred ccccccceeeecCCccEEEEecceeecccccCCCCE
Q 006117 145 SSSRIGYRTLEVPSSRIVIIEGIYALSEKLRPLIDL 180 (660)
Q Consensus 145 ~~~rs~~~~~~v~~a~VVIVEGilaL~deLr~llDl 180 (660)
....+++++.++..+..++-++.+++.||+...+|.
T Consensus 334 ~rglSGGerkRVsia~aL~~~p~vlllDEPTsGLDs 369 (1470)
T PLN03140 334 IRGISGGQKKRVTTGEMIVGPTKTLFMDEISTGLDS 369 (1470)
T ss_pred ccCCCcccceeeeehhhhcCCCcEEEEeCCCcCccH
Confidence 234567788888899999999999999999999996
No 397
>TIGR00017 cmk cytidylate kinase. This family consists of cytidylate kinase, which catalyzes the phosphorylation of cytidine 5-monophosphate (dCMP) to cytidine 5 -diphosphate (dCDP) in the presence of ATP or GTP. UMP and dCMP can also act as acceptors.
Probab=98.86 E-value=6e-09 Score=105.87 Aligned_cols=80 Identities=13% Similarity=0.068 Sum_probs=60.6
Q ss_pred cEEEEecceeecccccCCCCEEEEEEcChhHHHHHHHHHHHHH-hCCCHHHHHHHHHhccccchhhcccCCcCcCcEEEe
Q 006117 160 RIVIIEGIYALSEKLRPLIDLRVSVTGGVHFDLVKRVFRDIQR-VGQEPEEIIHQISETVYPMYKAFIEPDLQTAHIKII 238 (660)
Q Consensus 160 ~VVIVEGilaL~deLr~llDlkIfVdad~dirLiRRI~RDv~e-RGrs~E~Vl~qy~~~v~P~~~~fIeP~k~~ADiII~ 238 (660)
.-+|+||-.+.. .+.+..|++||++++.+.|..||..|.... ...+.+++.+++..+..-+..+...|.....|.++.
T Consensus 121 ~~~Vi~Gr~~~~-~v~~~a~~~ifl~a~~~~Ra~Rr~~~~~~~g~~~~~e~~~~~i~~RD~~D~~R~~~~~~~a~~~i~I 199 (217)
T TIGR00017 121 DGIIADGRDIGT-VVFPNAEVKIFLDASVEERAKRRYKQLQIKGNEVNFEELLAEIKERDDRDSNREVAPLKKADDALYL 199 (217)
T ss_pred CCEEEEEcCcce-EEeCCCCEEEEEECCHHHHHHHHHHHHhccCCCCCHHHHHHHHHHHHhcccccccCcccCCCCeEEE
Confidence 358999986442 255559999999999999888887776542 145679999999888777778888888777777655
Q ss_pred CC
Q 006117 239 NK 240 (660)
Q Consensus 239 N~ 240 (660)
++
T Consensus 200 dt 201 (217)
T TIGR00017 200 DT 201 (217)
T ss_pred EC
Confidence 44
No 398
>PLN03073 ABC transporter F family; Provisional
Probab=98.86 E-value=2.4e-09 Score=125.75 Aligned_cols=133 Identities=14% Similarity=0.062 Sum_probs=92.4
Q ss_pred ccceeeeecC-ceEEEEecceeeccCCcceEEEEECCCCCcHHHHHHHHHHhC-CCceEEEecCcccccccccccCCCCC
Q 006117 39 IEDTLSFEKG-FFIVIRACQLLAQKNHGIILVGVAGPSGAGKTVFTEKVLNFM-PSIAVITMDNYNDSSRIIDGNFDDPR 116 (660)
Q Consensus 39 ~~~~ls~~~g-~~~vL~~Isl~i~~ge~~~IIGI~GpSGSGKSTLak~L~~lL-p~~g~I~lDg~~~~~~~i~~vfq~p~ 116 (660)
..+++++.++ ...++++++|.+.+|+ ++||+|+||||||||+++|++++ |..|.|.+++. ..+++++|++.
T Consensus 510 ~~~~ls~~y~~~~~il~~vsl~i~~Ge---~i~LvG~NGsGKSTLLk~L~Gll~p~~G~I~~~~~----~~igyv~Q~~~ 582 (718)
T PLN03073 510 SFSDASFGYPGGPLLFKNLNFGIDLDS---RIAMVGPNGIGKSTILKLISGELQPSSGTVFRSAK----VRMAVFSQHHV 582 (718)
T ss_pred EEEeeEEEeCCCCeeEeccEEEEcCCC---EEEEECCCCCcHHHHHHHHhCCCCCCCceEEECCc----eeEEEEecccc
Confidence 3455666664 3469999999999999 99999999999999999999998 78899987652 24677777652
Q ss_pred CCchhhHHHH----HHhhhcC----------cccccc--cccccccccccceeeecCCccEEEEecceeecccccCCCCE
Q 006117 117 LTDYDTLLEN----IRGLKEG----------KAVQVP--IYDFKSSSRIGYRTLEVPSSRIVIIEGIYALSEKLRPLIDL 180 (660)
Q Consensus 117 l~d~~tl~e~----L~~L~~G----------k~I~~P--iyD~s~~~rs~~~~~~v~~a~VVIVEGilaL~deLr~llDl 180 (660)
. ...+.++ +.....+ ...... ..+......++++..++..+..++.++.+++.||+...+|.
T Consensus 583 ~--~l~~~~~~~~~~~~~~~~~~~~~i~~~L~~~gl~~~~~~~~~~~LSgGqkqRvaLAraL~~~p~lLLLDEPT~~LD~ 660 (718)
T PLN03073 583 D--GLDLSSNPLLYMMRCFPGVPEQKLRAHLGSFGVTGNLALQPMYTLSGGQKSRVAFAKITFKKPHILLLDEPSNHLDL 660 (718)
T ss_pred c--cCCcchhHHHHHHHhcCCCCHHHHHHHHHHCCCChHHhcCCccccCHHHHHHHHHHHHHhcCCCEEEEcCCCCCCCH
Confidence 1 1111111 0000000 001111 12333445667788888888999999999999999999997
No 399
>COG1101 PhnK ABC-type uncharacterized transport system, ATPase component [General function prediction only]
Probab=98.86 E-value=1e-09 Score=110.65 Aligned_cols=77 Identities=22% Similarity=0.319 Sum_probs=67.5
Q ss_pred eEEEEecceeeccCCcceEEEEECCCCCcHHHHHHHHHHhC-CCceEEEecCccccc-------ccccccCCCC--CCCc
Q 006117 50 FIVIRACQLLAQKNHGIILVGVAGPSGAGKTVFTEKVLNFM-PSIAVITMDNYNDSS-------RIIDGNFDDP--RLTD 119 (660)
Q Consensus 50 ~~vL~~Isl~i~~ge~~~IIGI~GpSGSGKSTLak~L~~lL-p~~g~I~lDg~~~~~-------~~i~~vfq~p--~l~d 119 (660)
..+|+++++.+++++ +|.|+|.||||||||++.|++.+ |+.|.|.+|+.+... ..++-+||+| ..++
T Consensus 19 k~~l~~~sL~I~~g~---FvtViGsNGAGKSTlln~iaG~l~~t~G~I~Idg~dVtk~~~~~RA~~larVfQdp~~gt~~ 95 (263)
T COG1101 19 KRALNGLSLEIAEGD---FVTVIGSNGAGKSTLLNAIAGDLKPTSGQILIDGVDVTKKSVAKRANLLARVFQDPLAGTAP 95 (263)
T ss_pred HHHHhcCceeecCCc---eEEEEcCCCccHHHHHHHhhCccccCCceEEECceecccCCHHHHhhHHHHHhcchhhCCcc
Confidence 468999999999999 99999999999999999999998 899999999986543 2356689998 4688
Q ss_pred hhhHHHHHHh
Q 006117 120 YDTLLENIRG 129 (660)
Q Consensus 120 ~~tl~e~L~~ 129 (660)
.+++.||+.-
T Consensus 96 ~lTieENl~l 105 (263)
T COG1101 96 ELTIEENLAL 105 (263)
T ss_pred cccHHHHHHH
Confidence 9999999864
No 400
>TIGR01271 CFTR_protein cystic fibrosis transmembrane conductor regulator (CFTR). The model describes the cystis fibrosis transmembrane conductor regulator (CFTR) in eukaryotes. The principal role of this protein is chloride ion conductance. The protein is predicted to consist of 12 transmembrane domains. Mutations or lesions in the genetic loci have been linked to the aetiology of asthma, bronchiectasis, chronic obstructive pulmonary disease etc. Disease-causing mutations have been studied by 36Cl efflux assays in vitro cell cultures and electrophysiology, all of which point to the impairment of chloride channel stability and not the biosynthetic processing per se.
Probab=98.85 E-value=3.8e-09 Score=132.86 Aligned_cols=136 Identities=15% Similarity=0.168 Sum_probs=104.5
Q ss_pred ceeeeec--CceEEEEecceeeccCCcceEEEEECCCCCcHHHHHHHHHHhCCCceEEEecCccccc-------cccccc
Q 006117 41 DTLSFEK--GFFIVIRACQLLAQKNHGIILVGVAGPSGAGKTVFTEKVLNFMPSIAVITMDNYNDSS-------RIIDGN 111 (660)
Q Consensus 41 ~~ls~~~--g~~~vL~~Isl~i~~ge~~~IIGI~GpSGSGKSTLak~L~~lLp~~g~I~lDg~~~~~-------~~i~~v 111 (660)
+++++.| +...+|++++|.+++|+ .|||+|+||||||||++.|.++++..|.|.+||.+... +.++++
T Consensus 1221 ~nVs~~Y~~~~~~vL~~is~~I~~Ge---kvaIvGrSGsGKSTLl~lL~rl~~~~G~I~IdG~di~~i~~~~lR~~is~I 1297 (1490)
T TIGR01271 1221 QGLTAKYTEAGRAVLQDLSFSVEGGQ---RVGLLGRTGSGKSTLLSALLRLLSTEGEIQIDGVSWNSVTLQTWRKAFGVI 1297 (1490)
T ss_pred EEEEEEeCCCCcceeeccEEEEcCCC---EEEEECCCCCCHHHHHHHHhhhcCCCcEEEECCEEcccCCHHHHHhceEEE
Confidence 4555555 34679999999999999 99999999999999999999998778999999986432 458899
Q ss_pred CCCCCCCchhhHHHHHHhhhcCc---------------cc-ccc-ccccccc----ccccceeeecCCccEEEEecceee
Q 006117 112 FDDPRLTDYDTLLENIRGLKEGK---------------AV-QVP-IYDFKSS----SRIGYRTLEVPSSRIVIIEGIYAL 170 (660)
Q Consensus 112 fq~p~l~d~~tl~e~L~~L~~Gk---------------~I-~~P-iyD~s~~----~rs~~~~~~v~~a~VVIVEGilaL 170 (660)
+|+|.+|+ .++++||.....-. .+ ..| .+|...+ ..++++.+.+..++.++-.+..++
T Consensus 1298 pQdp~LF~-GTIR~NLdp~~~~tdeei~~aL~~~~L~~~i~~lp~GLdt~v~e~G~nLSgGQrQrL~LARALLr~~~ILl 1376 (1490)
T TIGR01271 1298 PQKVFIFS-GTFRKNLDPYEQWSDEEIWKVAEEVGLKSVIEQFPDKLDFVLVDGGYVLSNGHKQLMCLARSILSKAKILL 1376 (1490)
T ss_pred eCCCccCc-cCHHHHhCcccCCCHHHHHHHHHHCCCHHHHHhCccccccccccCCCcCCHHHHHHHHHHHHHhCCCCEEE
Confidence 99999998 59999996432100 01 111 1232222 245578888888899999999999
Q ss_pred cccccCCCCE
Q 006117 171 SEKLRPLIDL 180 (660)
Q Consensus 171 ~deLr~llDl 180 (660)
.||+...+|.
T Consensus 1377 LDEaTS~lD~ 1386 (1490)
T TIGR01271 1377 LDEPSAHLDP 1386 (1490)
T ss_pred EeCCcccCCH
Confidence 9999999986
No 401
>COG4586 ABC-type uncharacterized transport system, ATPase component [General function prediction only]
Probab=98.82 E-value=1.7e-09 Score=112.16 Aligned_cols=126 Identities=16% Similarity=0.209 Sum_probs=82.4
Q ss_pred ecCceEEEEecceeeccCCcceEEEEECCCCCcHHHHHHHHHHhC-CCceEEEecCccccc------cccc--------c
Q 006117 46 EKGFFIVIRACQLLAQKNHGIILVGVAGPSGAGKTVFTEKVLNFM-PSIAVITMDNYNDSS------RIID--------G 110 (660)
Q Consensus 46 ~~g~~~vL~~Isl~i~~ge~~~IIGI~GpSGSGKSTLak~L~~lL-p~~g~I~lDg~~~~~------~~i~--------~ 110 (660)
++..+.++++|||.+++|+ ++|++|+|||||||++|+|.|.+ |..|.|.+.|+.... +.++ .
T Consensus 33 k~~~~~AVqdisf~IP~G~---ivgflGaNGAGKSTtLKmLTGll~p~~G~v~V~G~~Pf~~~~~~~~~~~~v~gqk~ql 109 (325)
T COG4586 33 KERSIEAVQDISFEIPKGE---IVGFLGANGAGKSTTLKMLTGLLLPTSGKVRVNGKDPFRRREEYLRSIGLVMGQKLQL 109 (325)
T ss_pred hhhhhhhhheeeeecCCCc---EEEEEcCCCCcchhhHHHHhCccccCCCeEEecCcCcchhHHHHHHHHHHHhhhhhee
Confidence 3445668999999999999 99999999999999999999998 999999999985432 1222 2
Q ss_pred cCCCCCCCchhhHHHHH------------Hhhhc----CcccccccccccccccccceeeecCCccEEEEecceeecccc
Q 006117 111 NFDDPRLTDYDTLLENI------------RGLKE----GKAVQVPIYDFKSSSRIGYRTLEVPSSRIVIIEGIYALSEKL 174 (660)
Q Consensus 111 vfq~p~l~d~~tl~e~L------------~~L~~----Gk~I~~PiyD~s~~~rs~~~~~~v~~a~VVIVEGilaL~deL 174 (660)
-|+.| +.+...+.+.+ ..+.+ ...+..|.-..+.++ ..++..+..++-.+-.+|.||+
T Consensus 110 ~Wdlp-~~ds~~v~~~Iy~Ipd~~F~~r~~~l~eiLdl~~~lk~~vr~LSlGq-----RmraeLaaaLLh~p~VLfLDEp 183 (325)
T COG4586 110 WWDLP-ALDSLEVLKLIYEIPDDEFAERLDFLTEILDLEGFLKWPVRKLSLGQ-----RMRAELAAALLHPPKVLFLDEP 183 (325)
T ss_pred eeech-hhhhHHHHHHHHhCCHHHHHHHHHHHHHHhcchhhhhhhhhhccchH-----HHHHHHHHHhcCCCcEEEecCC
Confidence 34445 22333333333 22221 122444544444443 3344444445556666777888
Q ss_pred cCCCCE
Q 006117 175 RPLIDL 180 (660)
Q Consensus 175 r~llDl 180 (660)
.=.+|.
T Consensus 184 TvgLDV 189 (325)
T COG4586 184 TVGLDV 189 (325)
T ss_pred ccCcch
Confidence 877776
No 402
>PLN03140 ABC transporter G family member; Provisional
Probab=98.82 E-value=3.5e-09 Score=132.48 Aligned_cols=150 Identities=15% Similarity=0.098 Sum_probs=108.7
Q ss_pred CceEEEEecceeeccCCcceEEEEECCCCCcHHHHHHHHHHhCC---CceEEEecCcccc----cccccccCCCCCCCch
Q 006117 48 GFFIVIRACQLLAQKNHGIILVGVAGPSGAGKTVFTEKVLNFMP---SIAVITMDNYNDS----SRIIDGNFDDPRLTDY 120 (660)
Q Consensus 48 g~~~vL~~Isl~i~~ge~~~IIGI~GpSGSGKSTLak~L~~lLp---~~g~I~lDg~~~~----~~~i~~vfq~p~l~d~ 120 (660)
+...+|+++++.+++|+ +++|+||||||||||+++|++..+ ..|.|.++|.... .+.+++++|++.+++.
T Consensus 891 ~~~~iL~~vs~~i~~Ge---l~aL~G~sGaGKTTLL~~LaG~~~~g~~~G~I~inG~~~~~~~~~~~igyv~Q~d~~~~~ 967 (1470)
T PLN03140 891 DRLQLLREVTGAFRPGV---LTALMGVSGAGKTTLMDVLAGRKTGGYIEGDIRISGFPKKQETFARISGYCEQNDIHSPQ 967 (1470)
T ss_pred CCceEeeCcEEEEECCe---EEEEECCCCCCHHHHHHHHcCCCCCCcccceEEECCccCChHHhhhheEEEccccccCCC
Confidence 34579999999999999 999999999999999999999873 4799999987543 2457899999989999
Q ss_pred hhHHHHHHhhh---cCcc----------------ccc-ccccccc-----cccccceeeecCCccEEEEecceeeccccc
Q 006117 121 DTLLENIRGLK---EGKA----------------VQV-PIYDFKS-----SSRIGYRTLEVPSSRIVIIEGIYALSEKLR 175 (660)
Q Consensus 121 ~tl~e~L~~L~---~Gk~----------------I~~-PiyD~s~-----~~rs~~~~~~v~~a~VVIVEGilaL~deLr 175 (660)
.++.|+|.... .... ... +..+... ...+++++.++..+..++.++.+++.||+.
T Consensus 968 lTV~E~L~~~a~lr~~~~~~~~~~~~~v~~vl~~lgL~~~~~~~vg~~~~~~LSgGerkRvsIa~aL~~~P~lL~LDEPT 1047 (1470)
T PLN03140 968 VTVRESLIYSAFLRLPKEVSKEEKMMFVDEVMELVELDNLKDAIVGLPGVTGLSTEQRKRLTIAVELVANPSIIFMDEPT 1047 (1470)
T ss_pred CcHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHHHCCChhHhCCccCCCCCCCcCHHHHHHHHHHHHHhhCCCEEEEeCCC
Confidence 99999986421 1000 000 1112221 234556777788888899999999999999
Q ss_pred CCCCEEEEEEcChhHHHHHHHHHHHHHhCCCH
Q 006117 176 PLIDLRVSVTGGVHFDLVKRVFRDIQRVGQEP 207 (660)
Q Consensus 176 ~llDlkIfVdad~dirLiRRI~RDv~eRGrs~ 207 (660)
..+|. .....+.++.|.+.+.|++.
T Consensus 1048 sgLD~-------~~a~~v~~~L~~l~~~g~tV 1072 (1470)
T PLN03140 1048 SGLDA-------RAAAIVMRTVRNTVDTGRTV 1072 (1470)
T ss_pred CCCCH-------HHHHHHHHHHHHHHHCCCEE
Confidence 99997 23334445555555556554
No 403
>COG4240 Predicted kinase [General function prediction only]
Probab=98.81 E-value=2.7e-08 Score=100.98 Aligned_cols=166 Identities=17% Similarity=0.286 Sum_probs=108.7
Q ss_pred cCCcceEEEEECCCCCcHHHHHHHHHHhC---C--CceEEEecCcccccc-------cccccCC---CCCCCchhhHHHH
Q 006117 62 KNHGIILVGVAGPSGAGKTVFTEKVLNFM---P--SIAVITMDNYNDSSR-------IIDGNFD---DPRLTDYDTLLEN 126 (660)
Q Consensus 62 ~ge~~~IIGI~GpSGSGKSTLak~L~~lL---p--~~g~I~lDg~~~~~~-------~i~~vfq---~p~l~d~~tl~e~ 126 (660)
+-++|+++||.||.||||||++-.|..++ . ..+..++|+++.... ...-..| -|+..|.....+.
T Consensus 46 e~grPli~gisGpQGSGKStls~~i~~~L~~kg~ert~~lSLDDlYlthadrl~La~q~npllq~RGlpGTHD~tlglnV 125 (300)
T COG4240 46 ERGRPLIVGISGPQGSGKSTLSALIVRLLAAKGLERTATLSLDDLYLTHADRLRLARQVNPLLQTRGLPGTHDPTLGLNV 125 (300)
T ss_pred hcCCceEEEeecCCCCchhhHHHHHHHHHHHhcccceEEeehhhhhcchHHHHHHHHhcCchhcccCCCCCCchHHHHHH
Confidence 44569999999999999999999998876 2 578899999876541 1111112 2566787777888
Q ss_pred HHhhhcCc-cccccccccccc----cccc-ceeeecCCccEEEEecceeecccc---------cC---------------
Q 006117 127 IRGLKEGK-AVQVPIYDFKSS----SRIG-YRTLEVPSSRIVIIEGIYALSEKL---------RP--------------- 176 (660)
Q Consensus 127 L~~L~~Gk-~I~~PiyD~s~~----~rs~-~~~~~v~~a~VVIVEGilaL~deL---------r~--------------- 176 (660)
|..+.+|+ ++.+|.||.+.+ +|.. .+.. ..+.+++|+||+++....+ .+
T Consensus 126 Lnai~~g~~~V~lPrfDKS~f~gagDR~p~~q~i-k~~vdivIlEGWfvGfrPidp~ll~~p~n~l~~~ed~a~~~dvN~ 204 (300)
T COG4240 126 LNAIARGGPTVPLPRFDKSAFAGAGDRAPQTQWI-KFEVDIVILEGWFVGFRPIDPELLAAPVNALEAAEDGAWRADVND 204 (300)
T ss_pred HHHHhcCCCCcccccccchhccCCCCCCCcccce-ecceeEEEEeeeeeecccCCHHHhCCCCccchhhccccHHHHHHh
Confidence 88877664 578999999755 3422 1222 2337999999998864211 11
Q ss_pred ----------CCCEEEEEEcC-hhHHHHHHHHHHHH-----HhCCCHHHHHHHHHhccccchhhcccCC
Q 006117 177 ----------LIDLRVSVTGG-VHFDLVKRVFRDIQ-----RVGQEPEEIIHQISETVYPMYKAFIEPD 229 (660)
Q Consensus 177 ----------llDlkIfVdad-~dirLiRRI~RDv~-----eRGrs~E~Vl~qy~~~v~P~~~~fIeP~ 229 (660)
-+|-.|-++++ ...-+.+|.+..++ ..|++-++|. .+.+..+|.|+-|+.+.
T Consensus 205 kLa~Y~pL~~rIdsLillta~din~vy~WRlQqEhkliAr~~kgmsdeqv~-efvn~ymrsl~lylq~l 272 (300)
T COG4240 205 KLAPYRPLFDRIDSLILLTAPDINTVYAWRLQQEHKLIARLAKGMSDEQVS-EFVNAYMRSLELYLQRL 272 (300)
T ss_pred hhhhhHHHHHHhhheeEecccchHHHHHHHHHHHHHHHHHHhccCcHHHHH-HHHHHHHHHHHHHHHHH
Confidence 12223444444 34456677776653 3488887764 45566778887666554
No 404
>COG1119 ModF ABC-type molybdenum transport system, ATPase component/photorepair protein PhrA [Inorganic ion transport and metabolism]
Probab=98.80 E-value=6.8e-09 Score=106.50 Aligned_cols=138 Identities=16% Similarity=0.097 Sum_probs=89.3
Q ss_pred eeeeccceeeeecCceEEEEecceeeccCCcceEEEEECCCCCcHHHHHHHHHHhC-CCceEEEecCcccc--------c
Q 006117 35 EIVPIEDTLSFEKGFFIVIRACQLLAQKNHGIILVGVAGPSGAGKTVFTEKVLNFM-PSIAVITMDNYNDS--------S 105 (660)
Q Consensus 35 ei~~~~~~ls~~~g~~~vL~~Isl~i~~ge~~~IIGI~GpSGSGKSTLak~L~~lL-p~~g~I~lDg~~~~--------~ 105 (660)
+....-+++++.++.+.+|++|++.+++|+ -..|+|+||||||||++.+++.. |.+|.+.+-|.... +
T Consensus 29 ~~li~l~~v~v~r~gk~iL~~isW~V~~ge---~W~I~G~NGsGKTTLL~ll~~~~~pssg~~~~~G~~~G~~~~~~elr 105 (257)
T COG1119 29 EPLIELKNVSVRRNGKKILGDLSWQVNPGE---HWAIVGPNGAGKTTLLSLLTGEHPPSSGDVTLLGRRFGKGETIFELR 105 (257)
T ss_pred cceEEecceEEEECCEeeccccceeecCCC---cEEEECCCCCCHHHHHHHHhcccCCCCCceeeeeeeccCCcchHHHH
Confidence 334455778889999999999999999999 99999999999999999999998 66777666554211 0
Q ss_pred cccccc----------------------CCCCCCC-------chhhHHHHHHhhhcCcccccccccccccccccceeeec
Q 006117 106 RIIDGN----------------------FDDPRLT-------DYDTLLENIRGLKEGKAVQVPIYDFKSSSRIGYRTLEV 156 (660)
Q Consensus 106 ~~i~~v----------------------fq~p~l~-------d~~tl~e~L~~L~~Gk~I~~PiyD~s~~~rs~~~~~~v 156 (660)
+.++++ |.....+ +...+...+..+-...-...|. +..+.++...+
T Consensus 106 k~IG~vS~~L~~~~~~~~~v~dvVlSg~~~siG~y~~~~~~~~~~~a~~lle~~g~~~la~r~~-----~~LS~Ge~rrv 180 (257)
T COG1119 106 KRIGLVSSELHERFRVRETVRDVVLSGFFASIGIYQEDLTAEDLAAAQWLLELLGAKHLADRPF-----GSLSQGEQRRV 180 (257)
T ss_pred HHhCccCHHHHhhcccccccceeeeecccccccccccCCCHHHHHHHHHHHHHcchhhhccCch-----hhcCHhHHHHH
Confidence 112211 1111111 1111122222221111222222 22333455566
Q ss_pred CCccEEEEecceeecccccCCCCE
Q 006117 157 PSSRIVIIEGIYALSEKLRPLIDL 180 (660)
Q Consensus 157 ~~a~VVIVEGilaL~deLr~llDl 180 (660)
-.++.++-.+.+++.||+...+|.
T Consensus 181 LiaRALv~~P~LLiLDEP~~GLDl 204 (257)
T COG1119 181 LIARALVKDPELLILDEPAQGLDL 204 (257)
T ss_pred HHHHHHhcCCCEEEecCccccCCh
Confidence 777889999999999999999997
No 405
>KOG0061 consensus Transporter, ABC superfamily (Breast cancer resistance protein) [Secondary metabolites biosynthesis, transport and catabolism]
Probab=98.79 E-value=2.6e-09 Score=123.53 Aligned_cols=155 Identities=19% Similarity=0.171 Sum_probs=111.5
Q ss_pred ceEEEEecceeeccCCcceEEEEECCCCCcHHHHHHHHHHhCC----CceEEEecCccccc----ccccccCCCCCCCch
Q 006117 49 FFIVIRACQLLAQKNHGIILVGVAGPSGAGKTVFTEKVLNFMP----SIAVITMDNYNDSS----RIIDGNFDDPRLTDY 120 (660)
Q Consensus 49 ~~~vL~~Isl~i~~ge~~~IIGI~GpSGSGKSTLak~L~~lLp----~~g~I~lDg~~~~~----~~i~~vfq~p~l~d~ 120 (660)
.+.+|++|+..+++|+ +.||.||||||||||+++|++..+ ..|.|.++|..... +..+|+.|+..+++.
T Consensus 42 ~k~iL~~vsg~~~~Ge---l~AimG~SGsGKtTLL~~Lagr~~~~~~~~G~ilvNG~~~~~~~~~~~s~yV~QdD~l~~~ 118 (613)
T KOG0061|consen 42 TKTILKGVSGTAKPGE---LLAIMGPSGSGKTTLLNALAGRLNGGLKLSGEILLNGRPRDSRSFRKISGYVQQDDVLLPT 118 (613)
T ss_pred cceeeeCcEEEEecCe---EEEEECCCCCCHHHHHHHHhccccCCCcceEEEEECCccCchhhhhheeEEEccccccccc
Confidence 5789999999999999 999999999999999999999973 47999999954332 457899999999999
Q ss_pred hhHHHHHHh---hhcCcc---------cc-----ccc---ccccc-----cccccceeeecCCccEEEEecceeeccccc
Q 006117 121 DTLLENIRG---LKEGKA---------VQ-----VPI---YDFKS-----SSRIGYRTLEVPSSRIVIIEGIYALSEKLR 175 (660)
Q Consensus 121 ~tl~e~L~~---L~~Gk~---------I~-----~Pi---yD~s~-----~~rs~~~~~~v~~a~VVIVEGilaL~deLr 175 (660)
+|++|.+.. ++-... |+ ... -|-.. ...++++..++..+-=++.++.+++.||+.
T Consensus 119 LTV~EtL~f~A~lrlp~~~~~~~k~~~V~~vi~~LgL~~~~~t~ig~~~~rgiSGGErkRvsia~Ell~~P~iLflDEPT 198 (613)
T KOG0061|consen 119 LTVRETLRFSALLRLPSSLSKEEKRERVEEVISELGLEKCADTLIGNPGIRGLSGGERKRVSIALELLTDPSILFLDEPT 198 (613)
T ss_pred ccHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCChhhccceecCCCCCccccchhhHHHHHHHHHcCCCEEEecCCC
Confidence 999999853 221110 00 000 01111 123445666777766789999999999999
Q ss_pred CCCCEEEEEEcChhHHHHHHHHHHHHHhCCCHHHHHHH
Q 006117 176 PLIDLRVSVTGGVHFDLVKRVFRDIQRVGQEPEEIIHQ 213 (660)
Q Consensus 176 ~llDlkIfVdad~dirLiRRI~RDv~eRGrs~E~Vl~q 213 (660)
..+|-. .-...-++.|++++.|+++--.+||
T Consensus 199 SGLDS~-------sA~~vv~~Lk~lA~~grtVi~tIHQ 229 (613)
T KOG0061|consen 199 SGLDSF-------SALQVVQLLKRLARSGRTVICTIHQ 229 (613)
T ss_pred CCcchh-------hHHHHHHHHHHHHhCCCEEEEEEeC
Confidence 999963 2223345556666668876444444
No 406
>TIGR00956 3a01205 Pleiotropic Drug Resistance (PDR) Family protein.
Probab=98.79 E-value=3e-09 Score=132.95 Aligned_cols=149 Identities=13% Similarity=0.064 Sum_probs=107.9
Q ss_pred CceEEEEecceeeccCCcceEEEEECCCCCcHHHHHHHHHHhC-----CCceEEEecCcccc------cccccccCCCCC
Q 006117 48 GFFIVIRACQLLAQKNHGIILVGVAGPSGAGKTVFTEKVLNFM-----PSIAVITMDNYNDS------SRIIDGNFDDPR 116 (660)
Q Consensus 48 g~~~vL~~Isl~i~~ge~~~IIGI~GpSGSGKSTLak~L~~lL-----p~~g~I~lDg~~~~------~~~i~~vfq~p~ 116 (660)
..+.+|+++++.+++|+ +++|+||||||||||+++|++.+ |..|.|.++|.... .+.+++++|++.
T Consensus 72 ~~~~iL~~vs~~i~~Ge---~~aIlG~nGsGKSTLLk~LaG~~~~~~~~~~G~I~~~G~~~~~~~~~~r~~i~yv~Q~d~ 148 (1394)
T TIGR00956 72 KTFDILKPMDGLIKPGE---LTVVLGRPGSGCSTLLKTIASNTDGFHIGVEGVITYDGITPEEIKKHYRGDVVYNAETDV 148 (1394)
T ss_pred CcceeeeCCEEEEECCE---EEEEECCCCCCHHHHHHHHhCCCCCCCCCceeEEEECCEehHHHHhhcCceeEEeccccc
Confidence 34679999999999999 99999999999999999999985 47899999997432 134789999999
Q ss_pred CCchhhHHHHHHhhhc---------C---c----c-cc--cccccc-----------cccccccceeeecCCccEEEEec
Q 006117 117 LTDYDTLLENIRGLKE---------G---K----A-VQ--VPIYDF-----------KSSSRIGYRTLEVPSSRIVIIEG 166 (660)
Q Consensus 117 l~d~~tl~e~L~~L~~---------G---k----~-I~--~PiyD~-----------s~~~rs~~~~~~v~~a~VVIVEG 166 (660)
+++.+++.|+|..-.. + + . +. ...+.. .....+++++.++..+..++.++
T Consensus 149 ~~~~lTV~E~l~f~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~~t~vg~~~~~~LSGGerkRvsIA~aL~~~p 228 (1394)
T TIGR00956 149 HFPHLTVGETLDFAARCKTPQNRPDGVSREEYAKHIADVYMATYGLSHTRNTKVGNDFVRGVSGGERKRVSIAEASLGGA 228 (1394)
T ss_pred cCCCCCHHHHHHHHHHhCCCCCCCCCCCHHHHHHHHHHHHHHHcCcccccCceeCCCcCCCCCcccchHHHHHHHHHhCC
Confidence 9999999999864211 0 0 0 00 000111 11235677888888888999999
Q ss_pred ceeecccccCCCCEEEEEEcChhHHHHHHHHHHHHH-hCCC
Q 006117 167 IYALSEKLRPLIDLRVSVTGGVHFDLVKRVFRDIQR-VGQE 206 (660)
Q Consensus 167 ilaL~deLr~llDlkIfVdad~dirLiRRI~RDv~e-RGrs 206 (660)
.+++.||+...+|.. ....+.++.|.+.+ .|.+
T Consensus 229 ~vlllDEPTsgLD~~-------~~~~i~~~L~~la~~~g~t 262 (1394)
T TIGR00956 229 KIQCWDNATRGLDSA-------TALEFIRALKTSANILDTT 262 (1394)
T ss_pred CEEEEeCCCCCcCHH-------HHHHHHHHHHHHHHhcCCE
Confidence 999999999999972 22333344455543 3654
No 407
>PRK08118 topology modulation protein; Reviewed
Probab=98.78 E-value=9.5e-09 Score=100.11 Aligned_cols=105 Identities=16% Similarity=0.152 Sum_probs=69.4
Q ss_pred EEEEECCCCCcHHHHHHHHHHhCCCceEEEecCcccccccccccCCCCCCCchhhHHHHHHhhhcCcccccccccccccc
Q 006117 68 LVGVAGPSGAGKTVFTEKVLNFMPSIAVITMDNYNDSSRIIDGNFDDPRLTDYDTLLENIRGLKEGKAVQVPIYDFKSSS 147 (660)
Q Consensus 68 IIGI~GpSGSGKSTLak~L~~lLp~~g~I~lDg~~~~~~~i~~vfq~p~l~d~~tl~e~L~~L~~Gk~I~~PiyD~s~~~ 147 (660)
-|.|+|++||||||+++.|+..+ +...+++|...... + +. ..+...+.+.+..+.
T Consensus 3 rI~I~G~~GsGKSTlak~L~~~l-~~~~~~lD~l~~~~---~--w~---~~~~~~~~~~~~~~~---------------- 57 (167)
T PRK08118 3 KIILIGSGGSGKSTLARQLGEKL-NIPVHHLDALFWKP---N--WE---GVPKEEQITVQNELV---------------- 57 (167)
T ss_pred EEEEECCCCCCHHHHHHHHHHHh-CCCceecchhhccc---C--Cc---CCCHHHHHHHHHHHh----------------
Confidence 58899999999999999999987 44467777542110 0 10 011111111111111
Q ss_pred cccceeeecCCccEEEEecceee-cccccCCCCEEEEEEcChhHHHHHHHHHHHHHhCCCH
Q 006117 148 RIGYRTLEVPSSRIVIIEGIYAL-SEKLRPLIDLRVSVTGGVHFDLVKRVFRDIQRVGQEP 207 (660)
Q Consensus 148 rs~~~~~~v~~a~VVIVEGilaL-~deLr~llDlkIfVdad~dirLiRRI~RDv~eRGrs~ 207 (660)
..+-+|+||.|.- .+...+.+|..||+++|.++++.|.+.|....+|.+.
T Consensus 58 ----------~~~~wVidG~~~~~~~~~l~~~d~vi~Ld~p~~~~~~R~~~R~~~~~g~~~ 108 (167)
T PRK08118 58 ----------KEDEWIIDGNYGGTMDIRLNAADTIIFLDIPRTICLYRAFKRRVQYRGKTR 108 (167)
T ss_pred ----------cCCCEEEeCCcchHHHHHHHhCCEEEEEeCCHHHHHHHHHHHHHHHcCCCC
Confidence 1123789998874 3545567999999999999999999999887677644
No 408
>COG0237 CoaE Dephospho-CoA kinase [Coenzyme metabolism]
Probab=98.78 E-value=5.3e-09 Score=105.22 Aligned_cols=162 Identities=18% Similarity=0.213 Sum_probs=99.7
Q ss_pred ceEEEEECCCCCcHHHHHHHHHHhCCCceEEEecCcccc---c-----ccccccCC-----CCCCCchhhHHHHHHh---
Q 006117 66 IILVGVAGPSGAGKTVFTEKVLNFMPSIAVITMDNYNDS---S-----RIIDGNFD-----DPRLTDYDTLLENIRG--- 129 (660)
Q Consensus 66 ~~IIGI~GpSGSGKSTLak~L~~lLp~~g~I~lDg~~~~---~-----~~i~~vfq-----~p~l~d~~tl~e~L~~--- 129 (660)
+.+|||+|..||||||+++.+.. + +.-+|+.|..... + ..+.-.|. ....++...+.+.+..
T Consensus 2 ~~iIglTG~igsGKStva~~~~~-~-G~~vidaD~v~r~~~~~~~~~~~~i~~~fG~~i~~~dg~~~r~~L~~~vf~~~~ 79 (201)
T COG0237 2 MLIIGLTGGIGSGKSTVAKILAE-L-GFPVIDADDVAREVVEPGGEALQEIAERFGLEILDEDGGLDRRKLREKVFNDPE 79 (201)
T ss_pred ceEEEEecCCCCCHHHHHHHHHH-c-CCeEEEccHHHHHHHhccchHHHHHHHHcCCcccCCCchhHHHHHHHHHcCCHH
Confidence 56999999999999999999999 4 4568888875220 0 01111122 1222344444443321
Q ss_pred -hhcCcccccccccccccccccceeeecCCccEEEEecceeecccccCCCCEEEEEEcChhHHHHHHHHHHHHHhCCCHH
Q 006117 130 -LKEGKAVQVPIYDFKSSSRIGYRTLEVPSSRIVIIEGIYALSEKLRPLIDLRVSVTGGVHFDLVKRVFRDIQRVGQEPE 208 (660)
Q Consensus 130 -L~~Gk~I~~PiyD~s~~~rs~~~~~~v~~a~VVIVEGilaL~deLr~llDlkIfVdad~dirLiRRI~RDv~eRGrs~E 208 (660)
...-+.+.+|.......... ......++++|-++++.......+|..|.|++|.++++.|-+.|+ +.+.+
T Consensus 80 ~~~~Le~i~hPli~~~~~~~~-----~~~~~~~~~~eiplL~e~~~~~~~d~Vi~V~a~~e~r~eRl~~R~----~~~~e 150 (201)
T COG0237 80 ARLKLEKILHPLIRAEIKVVI-----DGARSPYVVLEIPLLFEAGGEKYFDKVIVVYAPPEIRLERLMKRD----GLDEE 150 (201)
T ss_pred HHHHHHHhhhHHHHHHHHHHH-----HHhhCCceEEEchHHHhccccccCCEEEEEECCHHHHHHHHHhcC----CCCHH
Confidence 11123455553332221100 111112788898888876666669999999999999887766665 67777
Q ss_pred HHHHHHHhccccchhhcccCCcCcCcEEEeCCCCCC
Q 006117 209 EIIHQISETVYPMYKAFIEPDLQTAHIKIINKFNPF 244 (660)
Q Consensus 209 ~Vl~qy~~~v~P~~~~fIeP~k~~ADiII~N~~~p~ 244 (660)
++.... ...+|..+ ....||+||.|+++++
T Consensus 151 ~~~~~~-~~Q~~~~e-----k~~~ad~vi~n~~~i~ 180 (201)
T COG0237 151 DAEARL-ASQRDLEE-----KLALADVVIDNDGSIE 180 (201)
T ss_pred HHHHHH-HhcCCHHH-----HHhhcCChhhcCCCHH
Confidence 766655 33334433 3689999999988664
No 409
>KOG3220 consensus Similar to bacterial dephospho-CoA kinase [Coenzyme transport and metabolism]
Probab=98.78 E-value=5.1e-09 Score=104.40 Aligned_cols=165 Identities=19% Similarity=0.184 Sum_probs=108.6
Q ss_pred ceEEEEECCCCCcHHHHHHHHHHhCCCceEEEecCcccc--------cccccccCCCCC-----CCchhhHHHHHH----
Q 006117 66 IILVGVAGPSGAGKTVFTEKVLNFMPSIAVITMDNYNDS--------SRIIDGNFDDPR-----LTDYDTLLENIR---- 128 (660)
Q Consensus 66 ~~IIGI~GpSGSGKSTLak~L~~lLp~~g~I~lDg~~~~--------~~~i~~vfq~p~-----l~d~~tl~e~L~---- 128 (660)
+++||++|+.||||||+++.+.+. ++.+|..|-.... .+.+--.|.+.. -.+...+.+.+.
T Consensus 1 M~iVGLTGgiatGKStVs~~f~~~--G~~vIDaD~vaR~vv~PG~p~~~~ive~FG~eiLl~~G~inR~~LG~~vF~~~~ 78 (225)
T KOG3220|consen 1 MLIVGLTGGIATGKSTVSQVFKAL--GIPVIDADVVAREVVEPGTPAYRRIVEAFGTEILLEDGEINRKVLGKRVFSDPK 78 (225)
T ss_pred CeEEEeecccccChHHHHHHHHHc--CCcEecHHHHHHHHhcCCChHHHHHHHHhCceeeccCCcccHHHHhHHHhCCHH
Confidence 469999999999999999999865 4557766643111 011222333322 223333333221
Q ss_pred hhhcCcccccccccccccccccceeeecCCccEEEEecceeecccccCCCCEEEEEEcChhHHHHHHHHHHHHHhCCCHH
Q 006117 129 GLKEGKAVQVPIYDFKSSSRIGYRTLEVPSSRIVIIEGIYALSEKLRPLIDLRVSVTGGVHFDLVKRVFRDIQRVGQEPE 208 (660)
Q Consensus 129 ~L~~Gk~I~~PiyD~s~~~rs~~~~~~v~~a~VVIVEGilaL~deLr~llDlkIfVdad~dirLiRRI~RDv~eRGrs~E 208 (660)
....-+.+.+|........... ..-+...+++++|-+++|+..+...+..+|.|.+|.++.+.|-+.|| +.+.+
T Consensus 79 ~r~~Ln~IthP~Ir~em~ke~~--~~~l~G~r~ivlDiPLLFE~~~~~~~~~tvvV~cd~~~Ql~Rl~~Rd----~lse~ 152 (225)
T KOG3220|consen 79 KRQALNKITHPAIRKEMFKEIL--KLLLRGYRVIVLDIPLLFEAKLLKICHKTVVVTCDEELQLERLVERD----ELSEE 152 (225)
T ss_pred HHHHHHhcccHHHHHHHHHHHH--HHHhcCCeEEEEechHHHHHhHHhheeeEEEEEECcHHHHHHHHHhc----cccHH
Confidence 1112234566655444322111 23356778999999999988888999999999999999888777777 77888
Q ss_pred HHHHHHHhccccchhhcccCCcCcCcEEEeCCCCCC
Q 006117 209 EIIHQISETVYPMYKAFIEPDLQTAHIKIINKFNPF 244 (660)
Q Consensus 209 ~Vl~qy~~~v~P~~~~fIeP~k~~ADiII~N~~~p~ 244 (660)
+..++.. .|.-++...+.||+||.|+.+++
T Consensus 153 dAe~Rl~------sQmp~~~k~~~a~~Vi~Nng~~~ 182 (225)
T KOG3220|consen 153 DAENRLQ------SQMPLEKKCELADVVIDNNGSLE 182 (225)
T ss_pred HHHHHHH------hcCCHHHHHHhhheeecCCCChH
Confidence 8777762 33444556789999999998774
No 410
>COG0283 Cmk Cytidylate kinase [Nucleotide transport and metabolism]
Probab=98.77 E-value=2.5e-08 Score=100.74 Aligned_cols=80 Identities=14% Similarity=0.092 Sum_probs=66.1
Q ss_pred cEEEEecceeecccccCCCCEEEEEEcChhHHHHHHHHHHHHHhCCC--HHHHHHHHHhccccchhhcccCCcCcCcEEE
Q 006117 160 RIVIIEGIYALSEKLRPLIDLRVSVTGGVHFDLVKRVFRDIQRVGQE--PEEIIHQISETVYPMYKAFIEPDLQTAHIKI 237 (660)
Q Consensus 160 ~VVIVEGilaL~deLr~llDlkIfVdad~dirLiRRI~RDv~eRGrs--~E~Vl~qy~~~v~P~~~~fIeP~k~~ADiII 237 (660)
+-+|+||--+. .-+++..|+|||++++.++|..||....... |.+ .++++..+..+...+..+-+.|.+...|.++
T Consensus 121 ~~~V~dGRDiG-TvV~PdA~lKiFLtAS~e~RA~RR~~q~~~~-g~~~~~e~ll~eI~~RD~~D~~R~~~PLk~A~DA~~ 198 (222)
T COG0283 121 PGIVADGRDIG-TVVFPDAELKIFLTASPEERAERRYKQLQAK-GFSEVFEELLAEIKERDERDSNRAVAPLKPAEDALL 198 (222)
T ss_pred CCEEEecCCCc-ceECCCCCeEEEEeCCHHHHHHHHHHHHHhc-cCcchHHHHHHHHHHhhhccccCcCCCCcCCCCeEE
Confidence 44788886544 3567889999999999999999998877654 433 6999999999999999999999999999998
Q ss_pred eCCC
Q 006117 238 INKF 241 (660)
Q Consensus 238 ~N~~ 241 (660)
..+.
T Consensus 199 iDTs 202 (222)
T COG0283 199 LDTS 202 (222)
T ss_pred EECC
Confidence 7543
No 411
>KOG0059 consensus Lipid exporter ABCA1 and related proteins, ABC superfamily [Lipid transport and metabolism; General function prediction only]
Probab=98.76 E-value=8.7e-09 Score=123.75 Aligned_cols=158 Identities=14% Similarity=0.066 Sum_probs=118.1
Q ss_pred eccceeeeecCceE-EEEecceeeccCCcceEEEEECCCCCcHHHHHHHHHHhC-CCceEEEecCcccc--------ccc
Q 006117 38 PIEDTLSFEKGFFI-VIRACQLLAQKNHGIILVGVAGPSGAGKTVFTEKVLNFM-PSIAVITMDNYNDS--------SRI 107 (660)
Q Consensus 38 ~~~~~ls~~~g~~~-vL~~Isl~i~~ge~~~IIGI~GpSGSGKSTLak~L~~lL-p~~g~I~lDg~~~~--------~~~ 107 (660)
...+.+...++... +++++++.+++|+ +.|+.|+|||||||+.++|.|.. |+.|.+.+.|+... .+.
T Consensus 565 ~~~~~L~k~y~~~~~Av~~ls~~V~~ge---cfgLLG~NGAGKtT~f~mltG~~~~t~G~a~i~g~~i~~~~~~~~~~~~ 641 (885)
T KOG0059|consen 565 LVLNNLSKVYGGKDGAVRGLSFAVPPGE---CFGLLGVNGAGKTTTFKMLTGETKPTSGEALIKGHDITVSTDFQQVRKQ 641 (885)
T ss_pred EEEcceeeeecchhhhhcceEEEecCCc---eEEEecCCCCCchhhHHHHhCCccCCcceEEEecCccccccchhhhhhh
Confidence 44556666666665 9999999999999 99999999999999999999998 89999999887543 245
Q ss_pred ccccCCCCCCCchhhHHHHHHhhhc--C---cccc------------cccccccccccccceeeecCCccEEEEecceee
Q 006117 108 IDGNFDDPRLTDYDTLLENIRGLKE--G---KAVQ------------VPIYDFKSSSRIGYRTLEVPSSRIVIIEGIYAL 170 (660)
Q Consensus 108 i~~vfq~p~l~d~~tl~e~L~~L~~--G---k~I~------------~PiyD~s~~~rs~~~~~~v~~a~VVIVEGilaL 170 (660)
+||.+|+..+++.+|.+|++..... | .++. .+..+...+..+++.+.++.-+-.+|-.+..++
T Consensus 642 iGyCPQ~d~l~~~lT~rEhL~~~arlrG~~~~di~~~v~~ll~~~~L~~~~~~~~~~ySgG~kRkLs~aialig~p~vi~ 721 (885)
T KOG0059|consen 642 LGYCPQFDALWEELTGREHLEFYARLRGLPRSDIGSAIEKLLRLVGLGPYANKQVRTYSGGNKRRLSFAIALIGDPSVIL 721 (885)
T ss_pred cccCCchhhhhhhccHHHHHHHHHHHcCCChhHHHHHHHHHHHHcCChhhhccchhhCCCcchhhHHHHHHHhcCCCEEE
Confidence 8999999999999999999865432 2 0110 112222234445555555555555777778888
Q ss_pred cccccCCCCEEEEEEcChhHHHHHHHHHHHHHhCC
Q 006117 171 SEKLRPLIDLRVSVTGGVHFDLVKRVFRDIQRVGQ 205 (660)
Q Consensus 171 ~deLr~llDlkIfVdad~dirLiRRI~RDv~eRGr 205 (660)
.||+...+|. ...|.++.+.++..+.|+
T Consensus 722 LDEPstGmDP-------~arr~lW~ii~~~~k~g~ 749 (885)
T KOG0059|consen 722 LDEPSTGLDP-------KARRHLWDIIARLRKNGK 749 (885)
T ss_pred ecCCCCCCCH-------HHHHHHHHHHHHHHhcCC
Confidence 8999999997 567778888888877664
No 412
>KOG2878 consensus Predicted kinase [General function prediction only]
Probab=98.75 E-value=7e-08 Score=96.40 Aligned_cols=161 Identities=23% Similarity=0.319 Sum_probs=107.5
Q ss_pred ceEEEEECCCCCcHHHHHHHHHHhC-------CCceEEEecCccccccc-cc--------ccCC---CCCCCchhhHHHH
Q 006117 66 IILVGVAGPSGAGKTVFTEKVLNFM-------PSIAVITMDNYNDSSRI-ID--------GNFD---DPRLTDYDTLLEN 126 (660)
Q Consensus 66 ~~IIGI~GpSGSGKSTLak~L~~lL-------p~~g~I~lDg~~~~~~~-i~--------~vfq---~p~l~d~~tl~e~ 126 (660)
|++||+.||.||||||++-+|-..+ ..++.+++|+|+..... .. ...| .+...|...+.+.
T Consensus 31 Pl~igfSgPQGsGKstl~~ald~~lt~Ky~~E~s~~~~SvDDFYLThe~Q~eL~k~npnN~Llq~RGlaGtHD~kll~ev 110 (282)
T KOG2878|consen 31 PLVIGFSGPQGSGKSTLVFALDYKLTKKYIQEYSSATISVDDFYLTHEGQAELRKKNPNNALLQYRGLAGTHDLKLLVEV 110 (282)
T ss_pred cEEEEecCCCCCCceeehhhhHHHHHHHhccccceEEEEecceeeechhHHHHHhhCCCChhhccCCCCCcccHHHHHHH
Confidence 8999999999999999998876554 26889999999765411 10 1122 2445677777777
Q ss_pred HHhhhc----Cccccccccccccc----cccc-ceeeecCCccEEEEecceeecccc-------cCC-------------
Q 006117 127 IRGLKE----GKAVQVPIYDFKSS----SRIG-YRTLEVPSSRIVIIEGIYALSEKL-------RPL------------- 177 (660)
Q Consensus 127 L~~L~~----Gk~I~~PiyD~s~~----~rs~-~~~~~v~~a~VVIVEGilaL~deL-------r~l------------- 177 (660)
|..+.+ +..+.+|.||.+.. +|.. .+...+.|..++|+||+++....+ .+.
T Consensus 111 Lna~~k~~~d~~~v~vP~YdKS~f~G~GDR~d~sqw~k~~P~~~~ifEGWmlGF~Pl~~~~v~a~d~l~Gdl~~VN~kL~ 190 (282)
T KOG2878|consen 111 LNALSKLTKDGLKVKVPRYDKSAFSGRGDRADSSQWPKVEPLSVIIFEGWMLGFKPLPADVVKAVDPLQGDLEVVNKKLE 190 (282)
T ss_pred HHHHHcCCcccceEeccccchhhccCCCCCCccccCcccCceeEEEEecccccccccchhheeccCcccccHHHHhhHHH
Confidence 777654 44689999999854 3322 355567788999999999865322 011
Q ss_pred ---------CCEEEEEEcC-hhHHHHHHHHHHHH-----HhCCCHHHHHHHHHhccccchhhccc
Q 006117 178 ---------IDLRVSVTGG-VHFDLVKRVFRDIQ-----RVGQEPEEIIHQISETVYPMYKAFIE 227 (660)
Q Consensus 178 ---------lDlkIfVdad-~dirLiRRI~RDv~-----eRGrs~E~Vl~qy~~~v~P~~~~fIe 227 (660)
.|-.|-+.++ ..--..+|++..+. ..|++-|+|.+ |..+.+|.|..|+-
T Consensus 191 ~Y~d~~~k~Idslvv~~~q~inyVYrWRLQqEhal~~~~~kGMsDEeV~~-FV~rYmP~Yk~YL~ 254 (282)
T KOG2878|consen 191 AYYDAWDKYIDSLVVIKIQDINYVYRWRLQQEHALRQDGQKGMSDEEVND-FVSRYMPAYKAYLP 254 (282)
T ss_pred HHHHHHHHhhhhEEEEEecCccHhhhhhHHHHHHHHHhhccCCCHHHHHH-HHHhhhhHHHhhhh
Confidence 1223333332 23345577776654 35899999865 55788999998863
No 413
>PF13207 AAA_17: AAA domain; PDB: 3AKC_A 3AKE_A 3AKD_A 2QL6_G 2QT1_A 2QSZ_A 2QSY_A 2QT0_A 2QG6_A 2P0E_A ....
Probab=98.75 E-value=7.9e-09 Score=93.49 Aligned_cols=114 Identities=23% Similarity=0.336 Sum_probs=70.3
Q ss_pred EEEEECCCCCcHHHHHHHHHHhCCCceEEEecCcccccccccccCCCCCC----CchhhHHHHHHhhhcCcccccccccc
Q 006117 68 LVGVAGPSGAGKTVFTEKVLNFMPSIAVITMDNYNDSSRIIDGNFDDPRL----TDYDTLLENIRGLKEGKAVQVPIYDF 143 (660)
Q Consensus 68 IIGI~GpSGSGKSTLak~L~~lLp~~g~I~lDg~~~~~~~i~~vfq~p~l----~d~~tl~e~L~~L~~Gk~I~~PiyD~ 143 (660)
+|+|+|++||||||+++.|++.+ +.-.+++|++.... ... -++++.. .+...+.+.+..+..
T Consensus 1 vI~I~G~~gsGKST~a~~La~~~-~~~~i~~d~~~~~~-~~~-~~~~~~~~~~~~~~~~~~~~l~~~~~----------- 66 (121)
T PF13207_consen 1 VIIISGPPGSGKSTLAKELAERL-GFPVISMDDLIREP-GWI-ERDDDEREYIDADIDLLDDILEQLQN----------- 66 (121)
T ss_dssp EEEEEESTTSSHHHHHHHHHHHH-TCEEEEEHHHHCCG-THC-HGCTTCCHHHHHHHHHHHHHHHHHHE-----------
T ss_pred CEEEECCCCCCHHHHHHHHHHHH-CCeEEEecceEEec-ccc-ccCcchhhHHHHHHHHHHHHHHhhhc-----------
Confidence 68999999999999999999987 56678888832111 111 1111111 011111222222111
Q ss_pred cccccccceeeecCCccEEEEecceeeccc-ccCCCCEEEEEEcChhHHHHHHHHHHHHHhCCCH
Q 006117 144 KSSSRIGYRTLEVPSSRIVIIEGIYALSEK-LRPLIDLRVSVTGGVHFDLVKRVFRDIQRVGQEP 207 (660)
Q Consensus 144 s~~~rs~~~~~~v~~a~VVIVEGilaL~de-Lr~llDlkIfVdad~dirLiRRI~RDv~eRGrs~ 207 (660)
......+|+||.+....+ .....|..||++++.+.++.+++.|...++|++.
T Consensus 67 ------------~~~~~~~ii~g~~~~~~~~~~~~~~~~i~l~~~~~~~~~~~~~R~~~~~~r~~ 119 (121)
T PF13207_consen 67 ------------KPDNDNWIIDGSYESEMEIRLPEFDHVIYLDAPDEECRERRLKRRLRRRGRDR 119 (121)
T ss_dssp ------------TTT--EEEEECCSCHCCHSCCHHGGCEEEEEEEEHHHHHHHHHHHHHHEESSC
T ss_pred ------------cCCCCeEEEeCCCccchhhhhhcCCEEEEEECCCHHHHHHHHHHHhHHcCCCC
Confidence 234467999996652112 2334578999999988888999999999888764
No 414
>TIGR00957 MRP_assoc_pro multi drug resistance-associated protein (MRP). This model describes multi drug resistance-associated protein (MRP) in eukaryotes. The multidrug resistance-associated protein is an integral membrane protein that causes multidrug resistance when overexpressed in mammalian cells. It belongs to ABC transporter superfamily. The protein topology and function was experimentally demonstrated by epitope tagging and immunofluorescence. Insertion of tags in the critical regions associated with drug efflux, abrogated its function. The C-terminal domain seem to highly conserved.
Probab=98.75 E-value=8.2e-09 Score=130.14 Aligned_cols=130 Identities=19% Similarity=0.168 Sum_probs=99.5
Q ss_pred ceeeeecC--ceEEEEecceeeccCCcceEEEEECCCCCcHHHHHHHHHHhC-CCceEEEecCcccccccccccCCCCCC
Q 006117 41 DTLSFEKG--FFIVIRACQLLAQKNHGIILVGVAGPSGAGKTVFTEKVLNFM-PSIAVITMDNYNDSSRIIDGNFDDPRL 117 (660)
Q Consensus 41 ~~ls~~~g--~~~vL~~Isl~i~~ge~~~IIGI~GpSGSGKSTLak~L~~lL-p~~g~I~lDg~~~~~~~i~~vfq~p~l 117 (660)
+++++.++ ...+|++++|.+++|+ +++|+|+||||||||+++|++++ |..|.|.++| .++|++|+|.+
T Consensus 640 ~~~~~~~~~~~~~~l~~isl~i~~G~---~v~IvG~~GsGKSTLl~~l~g~~~~~~G~i~~~g------~i~yv~Q~~~l 710 (1522)
T TIGR00957 640 HNATFTWARDLPPTLNGITFSIPEGA---LVAVVGQVGCGKSSLLSALLAEMDKVEGHVHMKG------SVAYVPQQAWI 710 (1522)
T ss_pred EEeEEEcCCCCCceeeeeEEEEcCCC---EEEEECCCCCCHHHHHHHHhCCCccCCcEEEECC------EEEEEcCCccc
Confidence 44555554 2469999999999999 99999999999999999999998 7899999986 47899999988
Q ss_pred CchhhHHHHHHhhhcC---------------cccc-ccc-----ccccccccccceeeecCCccEEEEecceeecccccC
Q 006117 118 TDYDTLLENIRGLKEG---------------KAVQ-VPI-----YDFKSSSRIGYRTLEVPSSRIVIIEGIYALSEKLRP 176 (660)
Q Consensus 118 ~d~~tl~e~L~~L~~G---------------k~I~-~Pi-----yD~s~~~rs~~~~~~v~~a~VVIVEGilaL~deLr~ 176 (660)
++ .++++|+.....- ..+. .|. ........++++++++..++.+.-++.+++.||+..
T Consensus 711 ~~-~Ti~eNI~~g~~~~~~~~~~~~~~~~l~~~l~~~~~g~~t~ig~~g~~LSGGQkqRiaLARAl~~~~~illLDEp~s 789 (1522)
T TIGR00957 711 QN-DSLRENILFGKALNEKYYQQVLEACALLPDLEILPSGDRTEIGEKGVNLSGGQKQRVSLARAVYSNADIYLFDDPLS 789 (1522)
T ss_pred cC-CcHHHHhhcCCccCHHHHHHHHHHhCCHHHHHhcCCCCCceecCCCCCCCHHHHHHHHHHHHHhcCCCEEEEcCCcc
Confidence 75 6888888642110 0010 111 111223456778888999999999999999999999
Q ss_pred CCCE
Q 006117 177 LIDL 180 (660)
Q Consensus 177 llDl 180 (660)
.+|.
T Consensus 790 aLD~ 793 (1522)
T TIGR00957 790 AVDA 793 (1522)
T ss_pred ccCH
Confidence 9986
No 415
>COG5265 ATM1 ABC-type transport system involved in Fe-S cluster assembly, permease and ATPase components [Posttranslational modification, protein turnover, chaperones]
Probab=98.74 E-value=7.8e-09 Score=112.54 Aligned_cols=134 Identities=22% Similarity=0.260 Sum_probs=102.4
Q ss_pred eeeec-CceEEEEecceeeccCCcceEEEEECCCCCcHHHHHHHHHHhC-CCceEEEecCccccc-------ccccccCC
Q 006117 43 LSFEK-GFFIVIRACQLLAQKNHGIILVGVAGPSGAGKTVFTEKVLNFM-PSIAVITMDNYNDSS-------RIIDGNFD 113 (660)
Q Consensus 43 ls~~~-g~~~vL~~Isl~i~~ge~~~IIGI~GpSGSGKSTLak~L~~lL-p~~g~I~lDg~~~~~-------~~i~~vfq 113 (660)
++|.+ +...+|++++|.++.|+ .++|+|++|+||||+++.|-..+ +..|.|.+||++... +.++.++|
T Consensus 268 V~F~y~~~r~iL~~isf~i~~g~---tvAiVg~SG~gKsTI~rllfRFyD~~sG~I~id~qdir~vtq~slR~aIg~VPQ 344 (497)
T COG5265 268 VSFAYDPRRPILNGISFTIPLGK---TVAIVGESGAGKSTILRLLFRFYDVNSGSITIDGQDIRDVTQQSLRRAIGIVPQ 344 (497)
T ss_pred EEeeccccchhhcCccccccCcc---EEEEEeCCCCcHHHHHHHHHHHhCCcCceEEEcchhHHHhHHHHHHHHhCcCcc
Confidence 33443 34679999999999999 99999999999999999999999 899999999986532 56899999
Q ss_pred CCCCCchhhHHHHHHhhhcC----------------ccc-ccc-ccccccccc----ccceeeecCCccEEEEecceeec
Q 006117 114 DPRLTDYDTLLENIRGLKEG----------------KAV-QVP-IYDFKSSSR----IGYRTLEVPSSRIVIIEGIYALS 171 (660)
Q Consensus 114 ~p~l~d~~tl~e~L~~L~~G----------------k~I-~~P-iyD~s~~~r----s~~~~~~v~~a~VVIVEGilaL~ 171 (660)
+..+|+ ++...|++.-+.. .-+ ..| -|+-..++| +++++++++.++.++-++..++.
T Consensus 345 DtvLFN-Dti~yni~ygr~~at~eev~aaa~~aqi~~fi~~lP~gy~t~VgerglklSggekqrvaiar~ilk~p~il~~ 423 (497)
T COG5265 345 DTVLFN-DTIAYNIKYGRPDATAEEVGAAAEAAQIHDFIQSLPEGYDTGVGERGLKLSGGEKQRVAIARTILKNPPILIL 423 (497)
T ss_pred cceehh-hhHHHHHhccCccccHHHHHHHHHHhhhhHHHHhCchhhhcccchheeeccCchHHHHHHHHHHhcCCCEEEE
Confidence 988876 5666666532211 001 123 355555543 56788889999999999999999
Q ss_pred ccccCCCCE
Q 006117 172 EKLRPLIDL 180 (660)
Q Consensus 172 deLr~llDl 180 (660)
||-...+|.
T Consensus 424 deatsaldt 432 (497)
T COG5265 424 DEATSALDT 432 (497)
T ss_pred ehhhhHhhh
Confidence 998888875
No 416
>PRK07261 topology modulation protein; Provisional
Probab=98.74 E-value=2.1e-08 Score=97.94 Aligned_cols=124 Identities=19% Similarity=0.277 Sum_probs=81.2
Q ss_pred EEEEECCCCCcHHHHHHHHHHhCCCceEEEecCcccccccccccCCCCCCCchhhHHHHHHhhhcCcccccccccccccc
Q 006117 68 LVGVAGPSGAGKTVFTEKVLNFMPSIAVITMDNYNDSSRIIDGNFDDPRLTDYDTLLENIRGLKEGKAVQVPIYDFKSSS 147 (660)
Q Consensus 68 IIGI~GpSGSGKSTLak~L~~lLp~~g~I~lDg~~~~~~~i~~vfq~p~l~d~~tl~e~L~~L~~Gk~I~~PiyD~s~~~ 147 (660)
.|+|+|++|||||||++.|+..+ +...+++|...... .++.. +...+.+.+..+
T Consensus 2 ri~i~G~~GsGKSTla~~l~~~~-~~~~i~~D~~~~~~-----~~~~~---~~~~~~~~~~~~----------------- 55 (171)
T PRK07261 2 KIAIIGYSGSGKSTLARKLSQHY-NCPVLHLDTLHFQP-----NWQER---DDDDMIADISNF----------------- 55 (171)
T ss_pred EEEEEcCCCCCHHHHHHHHHHHh-CCCeEecCCEEecc-----ccccC---CHHHHHHHHHHH-----------------
Confidence 58999999999999999999887 34467777653211 11111 111122222111
Q ss_pred cccceeeecCCccEEEEecceee-c-ccccCCCCEEEEEEcChhHHHHHHHHHHHHHhCCCHHHHHHHHHhccccchhhc
Q 006117 148 RIGYRTLEVPSSRIVIIEGIYAL-S-EKLRPLIDLRVSVTGGVHFDLVKRVFRDIQRVGQEPEEIIHQISETVYPMYKAF 225 (660)
Q Consensus 148 rs~~~~~~v~~a~VVIVEGilaL-~-deLr~llDlkIfVdad~dirLiRRI~RDv~eRGrs~E~Vl~qy~~~v~P~~~~f 225 (660)
+.... +|+||.|.- . +...+.+|..||++.|...++.|.+.|.+..+|++.+++..++.+.....+-.|
T Consensus 56 --------~~~~~-wIidg~~~~~~~~~~l~~ad~vI~Ld~p~~~~~~R~lkR~~~~rg~~r~~l~~g~~e~~~~~~l~~ 126 (171)
T PRK07261 56 --------LLKHD-WIIDGNYSWCLYEERMQEADQIIFLNFSRFNCLYRAFKRYLKYRGKTRESMAENCPEKFDWEFIKW 126 (171)
T ss_pred --------HhCCC-EEEcCcchhhhHHHHHHHCCEEEEEcCCHHHHHHHHHHHHHHHcCCcCccccCCCcccCCHHHHHH
Confidence 11123 899999875 2 455568999999999999999999999998888877665554444333344444
Q ss_pred c
Q 006117 226 I 226 (660)
Q Consensus 226 I 226 (660)
+
T Consensus 127 i 127 (171)
T PRK07261 127 I 127 (171)
T ss_pred H
Confidence 4
No 417
>COG0488 Uup ATPase components of ABC transporters with duplicated ATPase domains [General function prediction only]
Probab=98.73 E-value=8e-09 Score=117.33 Aligned_cols=132 Identities=14% Similarity=0.175 Sum_probs=93.9
Q ss_pred eeccceeeeecCc-eEEEEecceeeccCCcceEEEEECCCCCcHHHHHHHHHHhC-CCceEEEecCcccccccccccCCC
Q 006117 37 VPIEDTLSFEKGF-FIVIRACQLLAQKNHGIILVGVAGPSGAGKTVFTEKVLNFM-PSIAVITMDNYNDSSRIIDGNFDD 114 (660)
Q Consensus 37 ~~~~~~ls~~~g~-~~vL~~Isl~i~~ge~~~IIGI~GpSGSGKSTLak~L~~lL-p~~g~I~lDg~~~~~~~i~~vfq~ 114 (660)
+...+++++.++. ..++++++|.+..|+ .|||+||||+|||||++.|.+.+ |.+|.|..... -.++|..|+
T Consensus 321 vl~~~~~~~~y~~~~~l~~~~s~~i~~g~---riaiiG~NG~GKSTLlk~l~g~~~~~~G~v~~g~~----v~igyf~Q~ 393 (530)
T COG0488 321 VLEFENVSKGYDGGRLLLKDLSFRIDRGD---RIAIVGPNGAGKSTLLKLLAGELGPLSGTVKVGET----VKIGYFDQH 393 (530)
T ss_pred eEEEeccccccCCCceeecCceEEecCCC---EEEEECCCCCCHHHHHHHHhhhcccCCceEEeCCc----eEEEEEEeh
Confidence 3445666666644 689999999999999 99999999999999999999988 77888876542 124454444
Q ss_pred CC-CCchhhHHHHHHhhhc-----------------CcccccccccccccccccceeeecCCccEEEEecceeecccccC
Q 006117 115 PR-LTDYDTLLENIRGLKE-----------------GKAVQVPIYDFKSSSRIGYRTLEVPSSRIVIIEGIYALSEKLRP 176 (660)
Q Consensus 115 p~-l~d~~tl~e~L~~L~~-----------------Gk~I~~PiyD~s~~~rs~~~~~~v~~a~VVIVEGilaL~deLr~ 176 (660)
.. +++..++.+.+..... ++.+..|+ ...+++++.++..+.++.-.+.+++.|||.+
T Consensus 394 ~~~l~~~~t~~d~l~~~~~~~~e~~~r~~L~~f~F~~~~~~~~v-----~~LSGGEk~Rl~La~ll~~~pNvLiLDEPTN 468 (530)
T COG0488 394 RDELDPDKTVLEELSEGFPDGDEQEVRAYLGRFGFTGEDQEKPV-----GVLSGGEKARLLLAKLLLQPPNLLLLDEPTN 468 (530)
T ss_pred hhhcCccCcHHHHHHhhCccccHHHHHHHHHHcCCChHHHhCch-----hhcCHhHHHHHHHHHHhccCCCEEEEcCCCc
Confidence 42 2233355555544331 12222222 3345677778888888888999999999999
Q ss_pred CCCE
Q 006117 177 LIDL 180 (660)
Q Consensus 177 llDl 180 (660)
.+|+
T Consensus 469 hLDi 472 (530)
T COG0488 469 HLDI 472 (530)
T ss_pred cCCH
Confidence 9997
No 418
>PLN03073 ABC transporter F family; Provisional
Probab=98.70 E-value=9.8e-09 Score=120.68 Aligned_cols=138 Identities=17% Similarity=0.172 Sum_probs=86.6
Q ss_pred cceeeeecCceEEEEecceeeccCCcceEEEEECCCCCcHHHHHHHHHHh----CCCceEEEecCcc-----cc------
Q 006117 40 EDTLSFEKGFFIVIRACQLLAQKNHGIILVGVAGPSGAGKTVFTEKVLNF----MPSIAVITMDNYN-----DS------ 104 (660)
Q Consensus 40 ~~~ls~~~g~~~vL~~Isl~i~~ge~~~IIGI~GpSGSGKSTLak~L~~l----Lp~~g~I~lDg~~-----~~------ 104 (660)
.+++++.++...+|++++|.+..|+ .+||+|+||||||||+++|++. +|..|.|.+.+.. ..
T Consensus 180 i~nls~~y~~~~ll~~isl~i~~Ge---~~gLvG~NGsGKSTLLr~l~g~~~~g~p~~g~I~~~~Q~~~g~~~t~~~~v~ 256 (718)
T PLN03073 180 MENFSISVGGRDLIVDASVTLAFGR---HYGLVGRNGTGKTTFLRYMAMHAIDGIPKNCQILHVEQEVVGDDTTALQCVL 256 (718)
T ss_pred EceEEEEeCCCEEEECCEEEECCCC---EEEEECCCCCCHHHHHHHHcCCCCCCCCCCCEEEEEeccCCCCCCCHHHHHH
Confidence 3567777777789999999999999 9999999999999999999974 3555666532211 00
Q ss_pred ----------cccccccCCCCCCC----------------chhhHHHHHHh----h---------------hcCcccccc
Q 006117 105 ----------SRIIDGNFDDPRLT----------------DYDTLLENIRG----L---------------KEGKAVQVP 139 (660)
Q Consensus 105 ----------~~~i~~vfq~p~l~----------------d~~tl~e~L~~----L---------------~~Gk~I~~P 139 (660)
...+++++|.+.+. +...+.+.+.. + ..+-.+...
T Consensus 257 ~~~~~~~~~~~~~~~~~~q~~~l~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~r~~~~L~~lgl~~~ 336 (718)
T PLN03073 257 NTDIERTQLLEEEAQLVAQQRELEFETETGKGKGANKDGVDKDAVSQRLEEIYKRLELIDAYTAEARAASILAGLSFTPE 336 (718)
T ss_pred HhhHHHHHHHHHHHHHHHHHHHhhhcccccccccccccccchHHHHHHHHHHHHHHHhcCcchHHHHHHHHHHHCCCChH
Confidence 01123333322110 11111111111 1 000011001
Q ss_pred cccccccccccceeeecCCccEEEEecceeecccccCCCCE
Q 006117 140 IYDFKSSSRIGYRTLEVPSSRIVIIEGIYALSEKLRPLIDL 180 (660)
Q Consensus 140 iyD~s~~~rs~~~~~~v~~a~VVIVEGilaL~deLr~llDl 180 (660)
..+......++++..++..+.+++.++.+++.|||...+|.
T Consensus 337 ~~~~~~~~LSgG~k~rv~LA~aL~~~p~lLlLDEPt~~LD~ 377 (718)
T PLN03073 337 MQVKATKTFSGGWRMRIALARALFIEPDLLLLDEPTNHLDL 377 (718)
T ss_pred HHhCchhhCCHHHHHHHHHHHHHhcCCCEEEEECCCCCCCH
Confidence 12333455667778888889999999999999999999997
No 419
>TIGR01271 CFTR_protein cystic fibrosis transmembrane conductor regulator (CFTR). The model describes the cystis fibrosis transmembrane conductor regulator (CFTR) in eukaryotes. The principal role of this protein is chloride ion conductance. The protein is predicted to consist of 12 transmembrane domains. Mutations or lesions in the genetic loci have been linked to the aetiology of asthma, bronchiectasis, chronic obstructive pulmonary disease etc. Disease-causing mutations have been studied by 36Cl efflux assays in vitro cell cultures and electrophysiology, all of which point to the impairment of chloride channel stability and not the biosynthetic processing per se.
Probab=98.69 E-value=1.1e-08 Score=128.66 Aligned_cols=121 Identities=19% Similarity=0.179 Sum_probs=95.0
Q ss_pred eEEEEecceeeccCCcceEEEEECCCCCcHHHHHHHHHHhC-CCceEEEecCcccccccccccCCCCCCCchhhHHHHHH
Q 006117 50 FIVIRACQLLAQKNHGIILVGVAGPSGAGKTVFTEKVLNFM-PSIAVITMDNYNDSSRIIDGNFDDPRLTDYDTLLENIR 128 (660)
Q Consensus 50 ~~vL~~Isl~i~~ge~~~IIGI~GpSGSGKSTLak~L~~lL-p~~g~I~lDg~~~~~~~i~~vfq~p~l~d~~tl~e~L~ 128 (660)
..+|++++|.+++|+ +++|+||+|||||||++.|++++ |..|.|.++| .++|++|+|.+++ .++++|+.
T Consensus 439 ~~~l~~i~l~i~~G~---~~~I~G~~GsGKSTLl~~l~G~~~~~~G~i~~~g------~iayv~Q~~~l~~-~Ti~eNI~ 508 (1490)
T TIGR01271 439 TPVLKNISFKLEKGQ---LLAVAGSTGSGKSSLLMMIMGELEPSEGKIKHSG------RISFSPQTSWIMP-GTIKDNII 508 (1490)
T ss_pred CcceeeeEEEECCCC---EEEEECCCCCCHHHHHHHHhCCCCCCCceEEECC------EEEEEeCCCccCC-ccHHHHHH
Confidence 358999999999999 99999999999999999999998 7899999987 3789999999987 48999886
Q ss_pred hhhcCc---------------cc-cccccc-----ccccccccceeeecCCccEEEEecceeecccccCCCCE
Q 006117 129 GLKEGK---------------AV-QVPIYD-----FKSSSRIGYRTLEVPSSRIVIIEGIYALSEKLRPLIDL 180 (660)
Q Consensus 129 ~L~~Gk---------------~I-~~PiyD-----~s~~~rs~~~~~~v~~a~VVIVEGilaL~deLr~llDl 180 (660)
...... .+ ..|.-+ ......++++++++..++.+.-+..+++.||+...+|.
T Consensus 509 ~g~~~~~~~~~~~~~~~~L~~~l~~l~~g~~t~vg~~g~~LSgGqkqRi~lARAl~~~~~illLDep~saLD~ 581 (1490)
T TIGR01271 509 FGLSYDEYRYTSVIKACQLEEDIALFPEKDKTVLGEGGITLSGGQRARISLARAVYKDADLYLLDSPFTHLDV 581 (1490)
T ss_pred hccccchHHHHHHHHHHhHHHHHHhccccccccccCcCCCcCHHHHHHHHHHHHHHcCCCEEEEeCCcccCCH
Confidence 321100 00 011111 11234566788888889999999999999999999986
No 420
>PLN03130 ABC transporter C family member; Provisional
Probab=98.67 E-value=1.9e-08 Score=127.34 Aligned_cols=130 Identities=16% Similarity=0.088 Sum_probs=98.6
Q ss_pred ceeeeecC---ceEEEEecceeeccCCcceEEEEECCCCCcHHHHHHHHHHhC-CCc-eEEEecCcccccccccccCCCC
Q 006117 41 DTLSFEKG---FFIVIRACQLLAQKNHGIILVGVAGPSGAGKTVFTEKVLNFM-PSI-AVITMDNYNDSSRIIDGNFDDP 115 (660)
Q Consensus 41 ~~ls~~~g---~~~vL~~Isl~i~~ge~~~IIGI~GpSGSGKSTLak~L~~lL-p~~-g~I~lDg~~~~~~~i~~vfq~p 115 (660)
++.+|.++ ...+|++++|.+++|+ .++|+|++|||||||++.|.+.+ |.. |.|.+. ..++|+.|+|
T Consensus 618 ~nvsf~y~~~~~~~vL~~inl~i~~Ge---~vaIvG~sGSGKSTLl~lLlG~~~~~~GG~I~l~------~~Iayv~Q~p 688 (1622)
T PLN03130 618 KNGYFSWDSKAERPTLSNINLDVPVGS---LVAIVGSTGEGKTSLISAMLGELPPRSDASVVIR------GTVAYVPQVS 688 (1622)
T ss_pred EeeEEEccCCCCCceeeceeEEecCCC---EEEEECCCCCCHHHHHHHHHHhhccCCCceEEEc------CeEEEEcCcc
Confidence 44455543 2568999999999999 99999999999999999999998 677 788753 3588999999
Q ss_pred CCCchhhHHHHHHhhhcC---------------ccc-cccc-cccccc----ccccceeeecCCccEEEEecceeecccc
Q 006117 116 RLTDYDTLLENIRGLKEG---------------KAV-QVPI-YDFKSS----SRIGYRTLEVPSSRIVIIEGIYALSEKL 174 (660)
Q Consensus 116 ~l~d~~tl~e~L~~L~~G---------------k~I-~~Pi-yD~s~~----~rs~~~~~~v~~a~VVIVEGilaL~deL 174 (660)
.+|+ .++++|+.....- ..+ ..|. ++-..+ ..++++++++..++.+.-+...++.||+
T Consensus 689 ~Lfn-gTIreNI~fg~~~d~e~y~~vl~a~~L~~di~~LP~Gd~T~IGe~G~~LSGGQKQRIaLARAly~~~~IlLLDEp 767 (1622)
T PLN03130 689 WIFN-ATVRDNILFGSPFDPERYERAIDVTALQHDLDLLPGGDLTEIGERGVNISGGQKQRVSMARAVYSNSDVYIFDDP 767 (1622)
T ss_pred ccCC-CCHHHHHhCCCcccHHHHHHHHHHhCcHHHHHhCCCcccccccCCCCCCCHHHHHHHHHHHHHhCCCCEEEECCC
Confidence 9987 6899988643210 001 1121 121222 2467888999999999999999999999
Q ss_pred cCCCCE
Q 006117 175 RPLIDL 180 (660)
Q Consensus 175 r~llDl 180 (660)
...+|.
T Consensus 768 tSALD~ 773 (1622)
T PLN03130 768 LSALDA 773 (1622)
T ss_pred ccccCH
Confidence 999986
No 421
>PLN03232 ABC transporter C family member; Provisional
Probab=98.64 E-value=2.2e-08 Score=126.13 Aligned_cols=131 Identities=15% Similarity=0.038 Sum_probs=96.4
Q ss_pred ceeeeecC---ceEEEEecceeeccCCcceEEEEECCCCCcHHHHHHHHHHhC-CCceEEEecCcccccccccccCCCCC
Q 006117 41 DTLSFEKG---FFIVIRACQLLAQKNHGIILVGVAGPSGAGKTVFTEKVLNFM-PSIAVITMDNYNDSSRIIDGNFDDPR 116 (660)
Q Consensus 41 ~~ls~~~g---~~~vL~~Isl~i~~ge~~~IIGI~GpSGSGKSTLak~L~~lL-p~~g~I~lDg~~~~~~~i~~vfq~p~ 116 (660)
++.+|.++ ...+|++++|.+++|+ .++|+|++|||||||++.|.+.+ |..|.+. .....++|++|+|.
T Consensus 618 ~~vsF~y~~~~~~~vL~~inl~i~~Ge---~vaIvG~sGSGKSTLl~lLlG~~~~~~G~i~-----~~~~~Iayv~Q~p~ 689 (1495)
T PLN03232 618 KNGYFSWDSKTSKPTLSDINLEIPVGS---LVAIVGGTGEGKTSLISAMLGELSHAETSSV-----VIRGSVAYVPQVSW 689 (1495)
T ss_pred EeeEEEcCCCCCCceeeeeEEEEcCCC---EEEEECCCCCcHHHHHHHHhCCCcccCCCEE-----EecCcEEEEcCccc
Confidence 44455543 2568999999999999 99999999999999999999998 5554332 12235889999999
Q ss_pred CCchhhHHHHHHhhhcC---------------ccc-cccc-cccccc----ccccceeeecCCccEEEEecceeeccccc
Q 006117 117 LTDYDTLLENIRGLKEG---------------KAV-QVPI-YDFKSS----SRIGYRTLEVPSSRIVIIEGIYALSEKLR 175 (660)
Q Consensus 117 l~d~~tl~e~L~~L~~G---------------k~I-~~Pi-yD~s~~----~rs~~~~~~v~~a~VVIVEGilaL~deLr 175 (660)
+|+ .+++||+..-..- ..+ ..|. ++-..+ ..+++|++++..++.++-+...++.||+.
T Consensus 690 Lf~-gTIreNI~fg~~~~~e~~~~vl~~~~L~~di~~Lp~Gd~T~IGe~G~~LSGGQkQRIaLARAly~~~~IlLLDEpt 768 (1495)
T PLN03232 690 IFN-ATVRENILFGSDFESERYWRAIDVTALQHDLDLLPGRDLTEIGERGVNISGGQKQRVSMARAVYSNSDIYIFDDPL 768 (1495)
T ss_pred ccc-ccHHHHhhcCCccCHHHHHHHHHHhCCHHHHHhCCCCCCceecCCCcccCHHHHHHHHHHHHHhcCCCEEEEcCCc
Confidence 987 6899998643210 001 1121 122222 24667889999999999999999999999
Q ss_pred CCCCE
Q 006117 176 PLIDL 180 (660)
Q Consensus 176 ~llDl 180 (660)
..+|.
T Consensus 769 SaLD~ 773 (1495)
T PLN03232 769 SALDA 773 (1495)
T ss_pred cccCH
Confidence 99986
No 422
>KOG0054 consensus Multidrug resistance-associated protein/mitoxantrone resistance protein, ABC superfamily [Secondary metabolites biosynthesis, transport and catabolism]
Probab=98.61 E-value=1.6e-08 Score=124.04 Aligned_cols=136 Identities=18% Similarity=0.230 Sum_probs=94.4
Q ss_pred ceeeeecCceEEEEecceeeccCCcceEEEEECCCCCcHHHHHHHHHHhC-CCceEEEecCccccc-------ccccccC
Q 006117 41 DTLSFEKGFFIVIRACQLLAQKNHGIILVGVAGPSGAGKTVFTEKVLNFM-PSIAVITMDNYNDSS-------RIIDGNF 112 (660)
Q Consensus 41 ~~ls~~~g~~~vL~~Isl~i~~ge~~~IIGI~GpSGSGKSTLak~L~~lL-p~~g~I~lDg~~~~~-------~~i~~vf 112 (660)
-++.+..+.-.||++|+|.+++|+ -|||+|.+|||||||+.+|-++. |..|.|.+||.+... ..++..|
T Consensus 1144 ~~~RYrp~lp~VLk~is~~I~p~e---KVGIVGRTGaGKSSL~~aLFRl~e~~~G~I~IDgvdI~~igL~dLRsrlsIIP 1220 (1381)
T KOG0054|consen 1144 LSLRYRPNLPLVLKGISFTIKPGE---KVGIVGRTGAGKSSLILALFRLVEPAEGEILIDGVDISKIGLHDLRSRLSIIP 1220 (1381)
T ss_pred eEEEeCCCCcchhcCceEEEcCCc---eEEEeCCCCCCHHHHHHHHHHhcCccCCeEEEcCeecccccHHHHHhcCeeeC
Confidence 344445556689999999999999 99999999999999999999998 789999999986543 5678899
Q ss_pred CCCCCCchhhHHHHHHhhhc---------------Cccc-cccc-cccccc----ccccceeeecCCccEEEEecceeec
Q 006117 113 DDPRLTDYDTLLENIRGLKE---------------GKAV-QVPI-YDFKSS----SRIGYRTLEVPSSRIVIIEGIYALS 171 (660)
Q Consensus 113 q~p~l~d~~tl~e~L~~L~~---------------Gk~I-~~Pi-yD~s~~----~rs~~~~~~v~~a~VVIVEGilaL~ 171 (660)
|+|.+|. .|++.||..+.+ ...+ ..|. .|.... ..+-+|++-+..+++++-....++.
T Consensus 1221 QdPvLFs-GTvR~NLDPf~e~sD~~IW~ALe~~~Lk~~v~~~p~~Ld~~v~egG~N~SvGQRQLlCLARALLr~skILvL 1299 (1381)
T KOG0054|consen 1221 QDPVLFS-GTVRFNLDPFDEYSDDEIWEALERCQLKDVVSSLPGGLDSEVSEGGENFSVGQRQLLCLARALLRKSKILVL 1299 (1381)
T ss_pred CCCceec-CccccccCcccccCHHHHHHHHHHhChHHHHhhCCcCCCceecCCCccCChHHHHHHHHHHHHhccCCEEEE
Confidence 9998864 344444432211 1111 1121 222211 1222355566777777777777778
Q ss_pred ccccCCCCE
Q 006117 172 EKLRPLIDL 180 (660)
Q Consensus 172 deLr~llDl 180 (660)
||-...+|.
T Consensus 1300 DEATAsVD~ 1308 (1381)
T KOG0054|consen 1300 DEATASVDP 1308 (1381)
T ss_pred ecccccCCh
Confidence 888888876
No 423
>PTZ00243 ABC transporter; Provisional
Probab=98.60 E-value=2.8e-08 Score=125.57 Aligned_cols=123 Identities=19% Similarity=0.164 Sum_probs=94.9
Q ss_pred CceEEEEecceeeccCCcceEEEEECCCCCcHHHHHHHHHHhC-CCceEEEecCcccccccccccCCCCCCCchhhHHHH
Q 006117 48 GFFIVIRACQLLAQKNHGIILVGVAGPSGAGKTVFTEKVLNFM-PSIAVITMDNYNDSSRIIDGNFDDPRLTDYDTLLEN 126 (660)
Q Consensus 48 g~~~vL~~Isl~i~~ge~~~IIGI~GpSGSGKSTLak~L~~lL-p~~g~I~lDg~~~~~~~i~~vfq~p~l~d~~tl~e~ 126 (660)
+...+|++++|.+++|+ +++|+|+||||||||++.|++.+ |..|.|.++ ..++|++|+|.+++ .++.+|
T Consensus 671 ~~~~iL~~isl~i~~G~---~~~IiG~nGsGKSTLL~~i~G~~~~~~G~i~~~------~~i~yv~Q~~~l~~-~Tv~en 740 (1560)
T PTZ00243 671 EPKVLLRDVSVSVPRGK---LTVVLGATGSGKSTLLQSLLSQFEISEGRVWAE------RSIAYVPQQAWIMN-ATVRGN 740 (1560)
T ss_pred CCceeEeeeEEEECCCC---EEEEECCCCCcHHHHHHHHhcCCCCCCcEEEEC------CeEEEEeCCCccCC-CcHHHH
Confidence 44569999999999999 99999999999999999999998 788998764 35889999998875 588888
Q ss_pred HHhhhcCc-----c-cc----------cc-----cccccccccccceeeecCCccEEEEecceeecccccCCCCE
Q 006117 127 IRGLKEGK-----A-VQ----------VP-----IYDFKSSSRIGYRTLEVPSSRIVIIEGIYALSEKLRPLIDL 180 (660)
Q Consensus 127 L~~L~~Gk-----~-I~----------~P-----iyD~s~~~rs~~~~~~v~~a~VVIVEGilaL~deLr~llDl 180 (660)
+....... . +. .| ..+......++++++++..++.++-+..+++.||+...+|.
T Consensus 741 I~~~~~~~~~~~~~~~~~~~l~~~l~~l~~g~~t~i~~~g~~LSGGQkqRvaLARAl~~~p~illLDEP~saLD~ 815 (1560)
T PTZ00243 741 ILFFDEEDAARLADAVRVSQLEADLAQLGGGLETEIGEKGVNLSGGQKARVSLARAVYANRDVYLLDDPLSALDA 815 (1560)
T ss_pred HHcCChhhHHHHHHHHHHhhhHHHHHHhhccchHHhcCCCCCCCHHHHHHHHHHHHHhcCCCEEEEcCccccCCH
Confidence 76422100 0 00 01 11222234566788888999999999999999999999986
No 424
>PRK09518 bifunctional cytidylate kinase/GTPase Der; Reviewed
Probab=98.59 E-value=3.7e-07 Score=107.55 Aligned_cols=76 Identities=11% Similarity=0.104 Sum_probs=64.7
Q ss_pred EEEEecceeecccccCCCCEEEEEEcChhHHHHHHHHHHHHHhCCCHHHHHHHHHhccccchhhcccCCcCcCcEEEeCC
Q 006117 161 IVIIEGIYALSEKLRPLIDLRVSVTGGVHFDLVKRVFRDIQRVGQEPEEIIHQISETVYPMYKAFIEPDLQTAHIKIINK 240 (660)
Q Consensus 161 VVIVEGilaL~deLr~llDlkIfVdad~dirLiRRI~RDv~eRGrs~E~Vl~qy~~~v~P~~~~fIeP~k~~ADiII~N~ 240 (660)
-+|+||--+. .-+.+..|+|||++++.++|..||..+... .+.+++++.+..+.+-+. +.+.|.+...|.++.++
T Consensus 139 ~~v~eGRdig-tvv~p~a~~K~~l~A~~~~Ra~Rr~~~~~~---~~~~~~~~~~~~Rd~~d~-R~~~pl~~~~da~~idt 213 (712)
T PRK09518 139 GIVAEGRDIT-TVVAPDAEVRILLTAREEVRQARRSGQDRS---ETPGVVLEDVAARDEADS-KVTSFLSAADGVTTLDN 213 (712)
T ss_pred cEEEecCccc-eEEecCCCeEEEEECCHHHHHHHHHHhhhc---CCHHHHHHHHHHHhhhcc-cccCCCCCCCCeEEEEC
Confidence 4889997765 345677899999999999999999888753 789999999999999999 99999888888887765
Q ss_pred C
Q 006117 241 F 241 (660)
Q Consensus 241 ~ 241 (660)
.
T Consensus 214 s 214 (712)
T PRK09518 214 S 214 (712)
T ss_pred C
Confidence 4
No 425
>PRK06217 hypothetical protein; Validated
Probab=98.55 E-value=2e-07 Score=91.52 Aligned_cols=103 Identities=22% Similarity=0.262 Sum_probs=66.5
Q ss_pred EEEEECCCCCcHHHHHHHHHHhCCCceEEEecCcccccccccccCCCCCCCchhhHHHH-HHhhhcCccccccccccccc
Q 006117 68 LVGVAGPSGAGKTVFTEKVLNFMPSIAVITMDNYNDSSRIIDGNFDDPRLTDYDTLLEN-IRGLKEGKAVQVPIYDFKSS 146 (660)
Q Consensus 68 IIGI~GpSGSGKSTLak~L~~lLp~~g~I~lDg~~~~~~~i~~vfq~p~l~d~~tl~e~-L~~L~~Gk~I~~PiyD~s~~ 146 (660)
.|.|+|++||||||+++.|+..+ +...+++|.+........ +.... +.....+. +..+
T Consensus 3 ~I~i~G~~GsGKSTla~~L~~~l-~~~~~~~D~~~~~~~~~~--~~~~~--~~~~~~~~~~~~~---------------- 61 (183)
T PRK06217 3 RIHITGASGSGTTTLGAALAERL-DIPHLDTDDYFWLPTDPP--FTTKR--PPEERLRLLLEDL---------------- 61 (183)
T ss_pred EEEEECCCCCCHHHHHHHHHHHc-CCcEEEcCceeeccCCCC--ccccC--CHHHHHHHHHHHH----------------
Confidence 59999999999999999999998 455788887643211100 00000 00000000 1111
Q ss_pred ccccceeeecCCccEEEEecceeec-ccccCCCCEEEEEEcChhHHHHHHHHHHHH
Q 006117 147 SRIGYRTLEVPSSRIVIIEGIYALS-EKLRPLIDLRVSVTGGVHFDLVKRVFRDIQ 201 (660)
Q Consensus 147 ~rs~~~~~~v~~a~VVIVEGilaL~-deLr~llDlkIfVdad~dirLiRRI~RDv~ 201 (660)
...+-+|+||.+... +.+...+|..||+++|.++++.|...|...
T Consensus 62 ----------~~~~~~vi~G~~~~~~~~~~~~~d~~i~Ld~~~~~~~~Rl~~R~~~ 107 (183)
T PRK06217 62 ----------RPREGWVLSGSALGWGDPLEPLFDLVVFLTIPPELRLERLRLREFQ 107 (183)
T ss_pred ----------hcCCCEEEEccHHHHHHHHHhhCCEEEEEECCHHHHHHHHHcCccc
Confidence 111347888998765 556778999999999999998888878754
No 426
>PRK11860 bifunctional 3-phosphoshikimate 1-carboxyvinyltransferase/cytidine monophosphate kinase; Provisional
Probab=98.53 E-value=2.1e-07 Score=108.75 Aligned_cols=168 Identities=13% Similarity=0.140 Sum_probs=102.9
Q ss_pred ceEEEEECCCCCcHHHHHHHHHHhCCCceEEEecCcccccccccccCCCCCCCchhhHHHHHHhhh----------cCcc
Q 006117 66 IILVGVAGPSGAGKTVFTEKVLNFMPSIAVITMDNYNDSSRIIDGNFDDPRLTDYDTLLENIRGLK----------EGKA 135 (660)
Q Consensus 66 ~~IIGI~GpSGSGKSTLak~L~~lLp~~g~I~lDg~~~~~~~i~~vfq~p~l~d~~tl~e~L~~L~----------~Gk~ 135 (660)
..+|+|.||+||||||+++.|+..+ +...+..+.++..-... ..-..-++.+...+.+.+..+. +++.
T Consensus 442 ~~~i~i~g~~~~gks~~~~~l~~~~-~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 519 (661)
T PRK11860 442 VPVICIDGPTASGKGTVAARVAEAL-GYHYLDSGALYRLTALA-ALRAGVALDDEAAIAALARGLPVRFEGDRIWLGGED 519 (661)
T ss_pred cceEEeeCCCCCCHHHHHHHHHHHh-CCeEecHHHhhhHHHHH-HHHcCcCCCCHHHHHHHHhcCCeeecCCeEEECCeE
Confidence 4589999999999999999999998 33344444443221000 0000111222233333332211 1111
Q ss_pred cc-----------------cccccccccccccceeeecCCccEEEEecceeecccccCCCCEEEEEEcChhHHHHHHHHH
Q 006117 136 VQ-----------------VPIYDFKSSSRIGYRTLEVPSSRIVIIEGIYALSEKLRPLIDLRVSVTGGVHFDLVKRVFR 198 (660)
Q Consensus 136 I~-----------------~PiyD~s~~~rs~~~~~~v~~a~VVIVEGilaL~deLr~llDlkIfVdad~dirLiRRI~R 198 (660)
+. .|........ .+.......-+|+||--+. ..+++..|+|||++++.++|..||..+
T Consensus 520 ~~~~i~~~~v~~~~s~~a~~~~vr~~l~~----~qr~~~~~~~~v~eGRdig-tvv~p~a~~kifl~a~~~~Ra~Rr~~~ 594 (661)
T PRK11860 520 VTDAIRTEAAGMGASRVSALPAVRAALLA----LQRSFRRLPGLVADGRDMG-TVIFPDAALKVFLTASAEARAERRYKQ 594 (661)
T ss_pred chhhhCcHHHHHHHHHHhCCHHHHHHHHH----HHHHHhhCCCEEEECCCCc-cEECCCCCeEEEEECChhHHHHHHHHH
Confidence 11 1111111000 1111222234788987765 346677999999999999999988876
Q ss_pred HHHHhCC--CHHHHHHHHHhccccchhhcccCCcCcCcEEEeCCC
Q 006117 199 DIQRVGQ--EPEEIIHQISETVYPMYKAFIEPDLQTAHIKIINKF 241 (660)
Q Consensus 199 Dv~eRGr--s~E~Vl~qy~~~v~P~~~~fIeP~k~~ADiII~N~~ 241 (660)
.. ++|. +.+++++++.++.+-+..+++.|.+...|.++.++.
T Consensus 595 ~~-~~~~~~~~~~~~~~~~~Rd~~d~~R~~~pl~~~~da~~idts 638 (661)
T PRK11860 595 LI-SKGISANIADLLADLEARDARDTQRSVAPLKPAQDALLLDNS 638 (661)
T ss_pred HH-hCCCCCCHHHHHHHHHHHhHHhhcCCCCCCccCCCEEEEECC
Confidence 54 3454 789999999999999999999999998888887654
No 427
>cd07891 CYTH-like_CthTTM-like_1 CYTH-like Clostridium thermocellum TTM-like subgroup 1. This subgroup contains the triphosphate tunnel metalloenzyme (TTM) from Clostridium thermocellum (CthTTM) and similar proteins. These are found primarily in bacteria. CthTTM is a metal dependent tripolyphosphatase, nucleoside triphosphatase, and nucleoside tetraphosphatase. It hydrolyzes the beta-gamma phosphoanhydride linkage of triphosphate-containing substrates including tripolyphosphate, nucleoside triphosphates and nucleoside tetraphosphates. These substrates are hydrolyzed, releasing Pi. Mg++ or Mn++ are required for the enzyme's activity. CthTTM appears to have no adenylate cyclase activity. This subgroup consists chiefly of bacterial sequences. These enzymes are members of the CYTH-like (also known as triphosphate tunnel metalloenzyme (TTM)-like) superfamily, which have a unique active site located within an eight-stranded beta barrel.
Probab=98.53 E-value=4.2e-07 Score=87.39 Aligned_cols=92 Identities=11% Similarity=0.089 Sum_probs=76.6
Q ss_pred eeeecCCCCCcccccceEEEeecCCeEEEEEeeeecCCCceeeeeEEEEeehhhHHHHhhcCCeEEEEEEEeeeEeecCc
Q 006117 282 DIYLLPPGEDPDACQSYLRMRNRDGKYNLMFEEWVTDSPFIISPRITFEVSVRLLGGLMALGYTIATILKRSSHIFYDDR 361 (660)
Q Consensus 282 DIYl~pP~~d~~~tde~LRvR~~dg~~~Ltykg~~~d~~fi~rp~~efeV~v~~~~gL~~LGy~~aa~V~R~re~y~~g~ 361 (660)
.-|+.. .-+..+|+|..++.+.|||||++.+ .+|-+.+++|....-+.|.. +..+..|.|.|.+|..++
T Consensus 26 Q~Yl~~------~~~~~lRiR~~~~~~~lT~K~~~~~---~~R~E~E~~i~~~~~~~l~~--~~~~~~I~K~R~~~~~~~ 94 (148)
T cd07891 26 QGYLST------DPERTVRVRIAGDRAYLTIKGPTNG---LSRYEFEYEIPLADAEELLA--LCEGPVIEKTRYRVPHGG 94 (148)
T ss_pred EEeeeC------CCCcEEEEEEeCCEEEEEEEeCCCC---ceEEEEEEeCCHHHHHHHHh--cCCCCeEEEEEEEEEeCC
Confidence 567733 2347999999999999999999877 66888888888776677765 566789999999999999
Q ss_pred EEEEeecccccCcc---eEEEEeccHH
Q 006117 362 VCVKTDWLEQLNRK---YVQVQGRDRL 385 (660)
Q Consensus 362 ~~i~lD~ve~Lg~~---FveI~g~~~~ 385 (660)
.++++|.++|+| . |+||+..+-+
T Consensus 95 ~~~~lD~~~g~~-~gL~~~EiE~~~e~ 120 (148)
T cd07891 95 HTWEVDVFHGEN-AGLVVAEIELPSED 120 (148)
T ss_pred EEEEEEEEcCCC-CceEEEEEEcCCcc
Confidence 999999999999 6 9999776544
No 428
>PRK01184 hypothetical protein; Provisional
Probab=98.52 E-value=1.9e-07 Score=91.13 Aligned_cols=160 Identities=16% Similarity=0.191 Sum_probs=79.2
Q ss_pred ceEEEEECCCCCcHHHHHHHHHHhCCCceEEEecCcccccccccccCCCCCCCchhhHHHHHHhhhcCcccccccccccc
Q 006117 66 IILVGVAGPSGAGKTVFTEKVLNFMPSIAVITMDNYNDSSRIIDGNFDDPRLTDYDTLLENIRGLKEGKAVQVPIYDFKS 145 (660)
Q Consensus 66 ~~IIGI~GpSGSGKSTLak~L~~lLp~~g~I~lDg~~~~~~~i~~vfq~p~l~d~~tl~e~L~~L~~Gk~I~~PiyD~s~ 145 (660)
+++|+|+|++||||||+++ ++..+ +...++.++.-..... .. .-+... ..+.+....+... .....+....
T Consensus 1 ~~~i~l~G~~GsGKsT~a~-~~~~~-g~~~i~~~d~lr~~~~-~~--~~~~~~--~~~g~~~~~~~~~--~~~~~~~~~~ 71 (184)
T PRK01184 1 MKIIGVVGMPGSGKGEFSK-IAREM-GIPVVVMGDVIREEVK-KR--GLEPTD--ENIGKVAIDLRKE--LGMDAVAKRT 71 (184)
T ss_pred CcEEEEECCCCCCHHHHHH-HHHHc-CCcEEEhhHHHHHHHH-Hc--CCCCCc--HHHHHHHHHHHHH--HChHHHHHHH
Confidence 3589999999999999988 44544 4556666543111100 00 001110 0111111111110 0000000000
Q ss_pred cccccceeeecCCccEEEEecceeec--ccccCCCC---EEEEEEcChhHHHHHHHHHHHHHhCCCHHHHHHHHHhcccc
Q 006117 146 SSRIGYRTLEVPSSRIVIIEGIYALS--EKLRPLID---LRVSVTGGVHFDLVKRVFRDIQRVGQEPEEIIHQISETVYP 220 (660)
Q Consensus 146 ~~rs~~~~~~v~~a~VVIVEGilaL~--deLr~llD---lkIfVdad~dirLiRRI~RDv~eRGrs~E~Vl~qy~~~v~P 220 (660)
+... ......++|++|..... +.++..++ ..|+|+++.+.+..|-..|+....+.+.+++.++..... |
T Consensus 72 ~~~i-----~~~~~~~vvidg~r~~~e~~~~~~~~~~~~~~i~v~~~~~~~~~Rl~~R~~~~d~~~~~~~~~r~~~q~-~ 145 (184)
T PRK01184 72 VPKI-----REKGDEVVVIDGVRGDAEVEYFRKEFPEDFILIAIHAPPEVRFERLKKRGRSDDPKSWEELEERDEREL-S 145 (184)
T ss_pred HHHH-----HhcCCCcEEEeCCCCHHHHHHHHHhCCcccEEEEEECCHHHHHHHHHHcCCCCChhhHHHHHHHHHHHh-c
Confidence 1111 01234678999974322 23444445 899999999887766554432111345566665553321 1
Q ss_pred chhhcccCCcCcCcEEEeCCCCC
Q 006117 221 MYKAFIEPDLQTAHIKIINKFNP 243 (660)
Q Consensus 221 ~~~~fIeP~k~~ADiII~N~~~p 243 (660)
.-+.+..+.||++|.|+.++
T Consensus 146 ---~~~~~~~~~ad~vI~N~~~~ 165 (184)
T PRK01184 146 ---WGIGEVIALADYMIVNDSTL 165 (184)
T ss_pred ---cCHHHHHHhcCEEEeCCCCH
Confidence 11334457899999987654
No 429
>PRK00023 cmk cytidylate kinase; Provisional
Probab=98.49 E-value=1.8e-07 Score=95.52 Aligned_cols=80 Identities=11% Similarity=0.113 Sum_probs=56.4
Q ss_pred cEEEEecceeecccccCCCCEEEEEEcChhHHHHHHHHHHHHH-hCCCHHHHHHHHHhccccchhhcccCCcCcCcEEEe
Q 006117 160 RIVIIEGIYALSEKLRPLIDLRVSVTGGVHFDLVKRVFRDIQR-VGQEPEEIIHQISETVYPMYKAFIEPDLQTAHIKII 238 (660)
Q Consensus 160 ~VVIVEGilaL~deLr~llDlkIfVdad~dirLiRRI~RDv~e-RGrs~E~Vl~qy~~~v~P~~~~fIeP~k~~ADiII~ 238 (660)
.-+|++|-.+. +.+.+..|++||+++|.+.|..||..+.... .+.+.+++.+.+.++.+-...+++.|.+..+|.++.
T Consensus 123 ~~~Vi~GR~~~-~~vl~~a~~~ifl~a~~e~R~~Rr~~~~~~~g~~~~~~~~~~~i~~rD~~~~~r~~~~l~~~~d~l~I 201 (225)
T PRK00023 123 PGLVMDGRDIG-TVVFPDAELKIFLTASAEERAERRYKELQAKGISVDFEDLLAEIKERDERDSNRAVAPLKPAEDALLL 201 (225)
T ss_pred CCEEEEecChh-eEEeCCCCEEEEEECCHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHhhhhcccccccccCCEEEE
Confidence 45888987533 2344558999999999998866666554332 245778888888888776667788888888874444
Q ss_pred CC
Q 006117 239 NK 240 (660)
Q Consensus 239 N~ 240 (660)
|+
T Consensus 202 DT 203 (225)
T PRK00023 202 DT 203 (225)
T ss_pred EC
Confidence 43
No 430
>COG4138 BtuD ABC-type cobalamin transport system, ATPase component [Coenzyme metabolism]
Probab=98.42 E-value=2.4e-07 Score=91.30 Aligned_cols=144 Identities=14% Similarity=0.144 Sum_probs=88.1
Q ss_pred EEecceeeccCCcceEEEEECCCCCcHHHHHHHHHHhCCCceEEEecCccccc-------cccccc------------CC
Q 006117 53 IRACQLLAQKNHGIILVGVAGPSGAGKTVFTEKVLNFMPSIAVITMDNYNDSS-------RIIDGN------------FD 113 (660)
Q Consensus 53 L~~Isl~i~~ge~~~IIGI~GpSGSGKSTLak~L~~lLp~~g~I~lDg~~~~~-------~~i~~v------------fq 113 (660)
|--+|..+..|+ ++-++||||||||||+..+++++|.+|.|.++|..... +..+|. |+
T Consensus 15 L~plS~qv~aGe---~~HliGPNGaGKSTLLA~lAGm~~~sGsi~~~G~~l~~~~~~eLArhRAYLsQqq~p~f~mpV~~ 91 (248)
T COG4138 15 LGPLSGEVRAGE---ILHLVGPNGAGKSTLLARMAGMTSGSGSIQFAGQPLEAWSATELARHRAYLSQQQTPPFAMPVWH 91 (248)
T ss_pred ccccccccccce---EEEEECCCCccHHHHHHHHhCCCCCCceEEECCcchhHHhHhHHHHHHHHHhhccCCcchhhhhh
Confidence 345667788999 99999999999999999999999999999999975432 222332 22
Q ss_pred CCCCC-chhhHHHHHHhhhcCcccccccccccccccccceeeecCCccEEEE-------ecceeecccccCCCCEEEEEE
Q 006117 114 DPRLT-DYDTLLENIRGLKEGKAVQVPIYDFKSSSRIGYRTLEVPSSRIVII-------EGIYALSEKLRPLIDLRVSVT 185 (660)
Q Consensus 114 ~p~l~-d~~tl~e~L~~L~~Gk~I~~PiyD~s~~~rs~~~~~~v~~a~VVIV-------EGilaL~deLr~llDlkIfVd 185 (660)
.-.++ +..++...+..+...-.+. ....++.+..++++.+++..+.+++- .|-+++.||+.+.+|+
T Consensus 92 YL~L~qP~~~~a~~i~~i~~~L~l~-DKL~Rs~~qLSGGEWQRVRLAav~LQv~Pd~NP~~~LLllDEP~~~LDv----- 165 (248)
T COG4138 92 YLTLHQPDKTRTELLNDVAGALALD-DKLGRSTNQLSGGEWQRVRLAAVVLQITPDANPAGQLLLLDEPMNSLDV----- 165 (248)
T ss_pred hhhhcCchHHHHHHHHHHHhhhccc-chhhhhhhhcCcccceeeEEeEEEEEecCCCCccceeEEecCCCcchhH-----
Confidence 22222 1223333333332211110 11234455666766666665555443 3667778888888887
Q ss_pred cChhHHHHHHHHHHHHHhCCCH
Q 006117 186 GGVHFDLVKRVFRDIQRVGQEP 207 (660)
Q Consensus 186 ad~dirLiRRI~RDv~eRGrs~ 207 (660)
......-|+.-.+...|.++
T Consensus 166 --AQ~~aLdrll~~~c~~G~~v 185 (248)
T COG4138 166 --AQQSALDRLLSALCQQGLAI 185 (248)
T ss_pred --HHHHHHHHHHHHHHhCCcEE
Confidence 33344455555555556654
No 431
>PRK06762 hypothetical protein; Provisional
Probab=98.42 E-value=1.7e-06 Score=83.07 Aligned_cols=121 Identities=17% Similarity=0.161 Sum_probs=66.7
Q ss_pred ceEEEEECCCCCcHHHHHHHHHHhCC-CceEEEecCcccccccccccCCCCCCCchhhHHHHHHhhhcCccccccccccc
Q 006117 66 IILVGVAGPSGAGKTVFTEKVLNFMP-SIAVITMDNYNDSSRIIDGNFDDPRLTDYDTLLENIRGLKEGKAVQVPIYDFK 144 (660)
Q Consensus 66 ~~IIGI~GpSGSGKSTLak~L~~lLp-~~g~I~lDg~~~~~~~i~~vfq~p~l~d~~tl~e~L~~L~~Gk~I~~PiyD~s 144 (660)
|.+|+|+|++||||||+++.|+..++ +...++.|.+.. .....++.+..+....+.+.+...
T Consensus 2 ~~li~i~G~~GsGKST~A~~L~~~l~~~~~~i~~D~~r~---~l~~~~~~~~~~~~~~~~~~~~~~-------------- 64 (166)
T PRK06762 2 TTLIIIRGNSGSGKTTIAKQLQERLGRGTLLVSQDVVRR---DMLRVKDGPGNLSIDLIEQLVRYG-------------- 64 (166)
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHhCCCeEEecHHHHHH---HhccccCCCCCcCHHHHHHHHHHH--------------
Confidence 46899999999999999999999884 232333333221 111112222222222222211110
Q ss_pred ccccccceeeecCCccEEEEecceeec------ccccCCC---CEEEEEEcChhHHHHHHHHHHHHHhCCCHHHHHHHHH
Q 006117 145 SSSRIGYRTLEVPSSRIVIIEGIYALS------EKLRPLI---DLRVSVTGGVHFDLVKRVFRDIQRVGQEPEEIIHQIS 215 (660)
Q Consensus 145 ~~~rs~~~~~~v~~a~VVIVEGilaL~------deLr~ll---DlkIfVdad~dirLiRRI~RDv~eRGrs~E~Vl~qy~ 215 (660)
......+|+|+.+.-. ..+.... ...||+++|.++++.|...|.. ..+.+.+.+..+|.
T Consensus 65 -----------~~~g~~vild~~~~~~~~~~~~~~l~~~~~~~~~~v~Ldap~e~~~~R~~~R~~-~~~~~~~~l~~~~~ 132 (166)
T PRK06762 65 -----------LGHCEFVILEGILNSDRYGPMLKELIHLFRGNAYTYYFDLSFEETLRRHSTRPK-SHEFGEDDMRRWWN 132 (166)
T ss_pred -----------HhCCCEEEEchhhccHhHHHHHHHHHHhcCCCeEEEEEeCCHHHHHHHHhcccc-cccCCHHHHHHHHh
Confidence 1123567778775321 1233333 3789999999998888777753 22445555555553
No 432
>COG1102 Cmk Cytidylate kinase [Nucleotide transport and metabolism]
Probab=98.41 E-value=1.1e-07 Score=92.15 Aligned_cols=145 Identities=18% Similarity=0.250 Sum_probs=90.0
Q ss_pred EEEEECCCCCcHHHHHHHHHHhCCCceEEEecCc-ccccccccccCCCCCCCchhhHHHHHHhhhcCccccccccccccc
Q 006117 68 LVGVAGPSGAGKTVFTEKVLNFMPSIAVITMDNY-NDSSRIIDGNFDDPRLTDYDTLLENIRGLKEGKAVQVPIYDFKSS 146 (660)
Q Consensus 68 IIGI~GpSGSGKSTLak~L~~lLp~~g~I~lDg~-~~~~~~i~~vfq~p~l~d~~tl~e~L~~L~~Gk~I~~PiyD~s~~ 146 (660)
+|.|.|++||||||+++.|++.++ --.|+-... ....+..++.+. +. ..+. -..|.+|....
T Consensus 2 ~ItIsG~pGsG~TTva~~lAe~~g-l~~vsaG~iFR~~A~e~gmsl~-----------ef-~~~A----E~~p~iD~~iD 64 (179)
T COG1102 2 VITISGLPGSGKTTVARELAEHLG-LKLVSAGTIFREMARERGMSLE-----------EF-SRYA----EEDPEIDKEID 64 (179)
T ss_pred EEEeccCCCCChhHHHHHHHHHhC-CceeeccHHHHHHHHHcCCCHH-----------HH-HHHH----hcCchhhHHHH
Confidence 689999999999999999999982 223332221 111122222111 11 1111 12455666655
Q ss_pred ccccceeeecCCccEEEEecceeecccccCCCCEEEEEEcChhHHHHHHHHHHHHHhCCCHHHHHHHHHhccccchhhcc
Q 006117 147 SRIGYRTLEVPSSRIVIIEGIYALSEKLRPLIDLRVSVTGGVHFDLVKRVFRDIQRVGQEPEEIIHQISETVYPMYKAFI 226 (660)
Q Consensus 147 ~rs~~~~~~v~~a~VVIVEGilaL~deLr~llDlkIfVdad~dirLiRRI~RDv~eRGrs~E~Vl~qy~~~v~P~~~~fI 226 (660)
.+.. .....+-+|+||-++.+= .....|++||+.+|..+|..|-..|+ |.+.+++......+.+...++|.
T Consensus 65 ~rq~----e~a~~~nvVlegrLA~Wi-~k~~adlkI~L~Apl~vRa~Ria~RE----gi~~~~a~~~~~~RE~se~kRY~ 135 (179)
T COG1102 65 RRQK----ELAKEGNVVLEGRLAGWI-VREYADLKIWLKAPLEVRAERIAKRE----GIDVDEALAETVEREESEKKRYK 135 (179)
T ss_pred HHHH----HHHHcCCeEEhhhhHHHH-hccccceEEEEeCcHHHHHHHHHHhc----CCCHHHHHHHHHHHHHHHHHHHH
Confidence 4432 122245689999888752 12688999999999888765555554 88999988888777666666664
Q ss_pred c------CCcCcCcEEEe
Q 006117 227 E------PDLQTAHIKII 238 (660)
Q Consensus 227 e------P~k~~ADiII~ 238 (660)
+ -.....|+||+
T Consensus 136 ~~YgIDidDlSiyDLVin 153 (179)
T COG1102 136 KIYGIDIDDLSIYDLVIN 153 (179)
T ss_pred HHhCCCCccceeeEEEEe
Confidence 3 12455677774
No 433
>KOG0065 consensus Pleiotropic drug resistance proteins (PDR1-15), ABC superfamily [Secondary metabolites biosynthesis, transport and catabolism]
Probab=98.39 E-value=1.6e-06 Score=105.30 Aligned_cols=160 Identities=14% Similarity=0.107 Sum_probs=106.1
Q ss_pred eccceeeeecCceEEEEecceeeccCCcceEEEEECCCCCcHHHHHHHHHHhC-C--CceEEEecCcccc----cccccc
Q 006117 38 PIEDTLSFEKGFFIVIRACQLLAQKNHGIILVGVAGPSGAGKTVFTEKVLNFM-P--SIAVITMDNYNDS----SRIIDG 110 (660)
Q Consensus 38 ~~~~~ls~~~g~~~vL~~Isl~i~~ge~~~IIGI~GpSGSGKSTLak~L~~lL-p--~~g~I~lDg~~~~----~~~i~~ 110 (660)
+++-....+.+.+.+|++|+=-+.+|. +.+|.|.||||||||++.|++.. . -.|.|.++|+... ++..+|
T Consensus 792 dl~~~~~~qG~~~qLL~~V~G~~kPG~---LTALMG~SGAGKTTLLdvLA~R~t~G~I~Gdi~i~G~p~~q~tF~R~~GY 868 (1391)
T KOG0065|consen 792 DLPYEMPIQGGTRQLLNNVSGAFKPGV---LTALMGESGAGKTTLLDVLAGRKTGGYIEGDILISGFPKDQETFARVSGY 868 (1391)
T ss_pred eCCccccccccceEhhhcCceEecCCc---eeehhcCCCCchHHHHHHHhcCcccceEEeEEEECCeeCchhhhccccce
Confidence 344444344467789999999999999 99999999999999999999996 2 3688999999765 267899
Q ss_pred cCCCCCCCchhhHHHHHHh---hhcCcc----------------ccccccccc-ccc----cccceeeecCCccEEEEec
Q 006117 111 NFDDPRLTDYDTLLENIRG---LKEGKA----------------VQVPIYDFK-SSS----RIGYRTLEVPSSRIVIIEG 166 (660)
Q Consensus 111 vfq~p~l~d~~tl~e~L~~---L~~Gk~----------------I~~PiyD~s-~~~----rs~~~~~~v~~a~VVIVEG 166 (660)
+-|++.-.+..||+|-|.. |+.-+. ++.+.|... .+. .+..++.++..+-=++-.+
T Consensus 869 vqQ~DiH~~~~TVrESL~fSA~LRlp~~v~~~ek~~yVe~Vi~lleL~~~~daiVG~~G~GLs~eQRKrLTIgVELvA~P 948 (1391)
T KOG0065|consen 869 VEQQDIHSPELTVRESLRFSAALRLPKEVSDEEKYEYVEEVIELLELKEYADALVGLPGSGLSTEQRKRLTIGVELVANP 948 (1391)
T ss_pred eecccccCcccchHHHHHHHHHHcCCCcCCHHHHHHHHHHHHHHhCchhhhhhhccCCCCCCCHHHhceeeEEEEEecCC
Confidence 9988877788999998853 332111 112211111 111 1111222233222244445
Q ss_pred -ceeecccccCCCCEEEEEEcChhHHHHHHHHHHHHHhCCCH
Q 006117 167 -IYALSEKLRPLIDLRVSVTGGVHFDLVKRVFRDIQRVGQEP 207 (660)
Q Consensus 167 -ilaL~deLr~llDlkIfVdad~dirLiRRI~RDv~eRGrs~ 207 (660)
.++|.||+...+|- ..--.+-|+.|.+.+.|++.
T Consensus 949 ~~ilFLDEPTSGLDs-------qaA~~i~~~lrkla~tGqtI 983 (1391)
T KOG0065|consen 949 SSILFLDEPTSGLDS-------QAAAIVMRFLRKLADTGQTI 983 (1391)
T ss_pred ceeEEecCCCCCccH-------HHHHHHHHHHHHHHhcCCeE
Confidence 67778999999995 22234456677777788875
No 434
>cd00820 PEPCK_HprK Phosphoenolpyruvate carboxykinase (PEPCK), a critical gluconeogenic enzyme, catalyzes the first committed step in the diversion of tricarboxylic acid cycle intermediates toward gluconeogenesis. It catalyzes the reversible decarboxylation and phosphorylation of oxaloacetate to yield phosphoenolpyruvate and carbon dioxide, using a nucleotide molecule (ATP or GTP) for the phosphoryl transfer, and has a strict requirement for divalent metal ions for activity. PEPCK's separate into two phylogenetic groups based on their nucleotide substrate specificity (the ATP-, and GTP-dependent groups).HprK/P, the bifunctional histidine-containing protein kinase/phosphatase, controls the phosphorylation state of the phosphocarrier protein HPr and regulates the utilization of carbon sources by gram-positive bacteria. It catalyzes both the ATP-dependent phosphorylation of HPr and its dephosphorylation by phosphorolysis. PEPCK and the C-terminal catalytic domain of HprK/P are structural
Probab=98.38 E-value=4.7e-07 Score=82.65 Aligned_cols=69 Identities=17% Similarity=0.023 Sum_probs=51.0
Q ss_pred eEEEEecceeeccCCcceEEEEECCCCCcHHHHHHHHHHhCCCceEEEecCcccc-------cccccccCCCCCCCchhh
Q 006117 50 FIVIRACQLLAQKNHGIILVGVAGPSGAGKTVFTEKVLNFMPSIAVITMDNYNDS-------SRIIDGNFDDPRLTDYDT 122 (660)
Q Consensus 50 ~~vL~~Isl~i~~ge~~~IIGI~GpSGSGKSTLak~L~~lLp~~g~I~lDg~~~~-------~~~i~~vfq~p~l~d~~t 122 (660)
..+|++++|.+++++ +++|.||||||||||++++. .|.+.+++.+.. .+...+++|+ + -+.+
T Consensus 2 ~~aL~~vsl~i~~ge---~v~I~GpSGsGKSTLl~~l~-----~G~i~~~g~di~~~~~~~~~~~~~~~~q~--l-f~~t 70 (107)
T cd00820 2 TTSLHGVLVDVYGKV---GVLITGDSGIGKTELALELI-----KRKHRLVGDDNVEIREDSKDELIGRNPEL--G-LEIR 70 (107)
T ss_pred ceEEEeeEEEEcCCE---EEEEEcCCCCCHHHHHHHhh-----CCeEEEeeEeHHHhhhhhcCCEEEEechh--c-chhh
Confidence 368999999999999 99999999999999999986 455666664321 1234556665 3 3367
Q ss_pred HHHHHHh
Q 006117 123 LLENIRG 129 (660)
Q Consensus 123 l~e~L~~ 129 (660)
+++||..
T Consensus 71 i~~Ni~~ 77 (107)
T cd00820 71 LRLNIFL 77 (107)
T ss_pred HHhhcee
Confidence 7877765
No 435
>COG3954 PrkB Phosphoribulokinase [Energy production and conversion]
Probab=98.36 E-value=1.6e-06 Score=86.34 Aligned_cols=170 Identities=17% Similarity=0.285 Sum_probs=123.4
Q ss_pred ceEEEEECCCCCcHHHHHHHHHHhC----CCceEEEecCccccc-------------ccccccCCCCCCCchhhHHHHHH
Q 006117 66 IILVGVAGPSGAGKTVFTEKVLNFM----PSIAVITMDNYNDSS-------------RIIDGNFDDPRLTDYDTLLENIR 128 (660)
Q Consensus 66 ~~IIGI~GpSGSGKSTLak~L~~lL----p~~g~I~lDg~~~~~-------------~~i~~vfq~p~l~d~~tl~e~L~ 128 (660)
..+|+|+|.||+|-||........+ -....|.-|.|+... +...+.+-.|.+.|+..+.+.+.
T Consensus 5 hPiIavTGSSGAGTTTts~aFrKiF~~~~I~aa~iEGDsFHR~tRpeMd~~Irkar~~GrhisyFgpeANdf~~LE~~f~ 84 (289)
T COG3954 5 HPVIAVTGSSGAGTTTTSLAFRKIFAQLNIHAAEVEGDSFHRYTRPEMDMAIRKARDAGRHISYFGPEANDFGLLEQTFI 84 (289)
T ss_pred CceEEEecCCCCCcccHHHHHHHHHHhcCccHhhhccccccccCchhHHHHHHHHHHcCCcceecCccccchHHHHHHHH
Confidence 3599999999999999876655554 234556666664321 22334455677888888888887
Q ss_pred hhhcCccc----------ccccccccccccccceeeecCCccEEEEecceeec--c--cccCCCCEEEEEEcChhHHHHH
Q 006117 129 GLKEGKAV----------QVPIYDFKSSSRIGYRTLEVPSSRIVIIEGIYALS--E--KLRPLIDLRVSVTGGVHFDLVK 194 (660)
Q Consensus 129 ~L~~Gk~I----------~~PiyD~s~~~rs~~~~~~v~~a~VVIVEGilaL~--d--eLr~llDlkIfVdad~dirLiR 194 (660)
...+...- +.-.|+...+....|+.. -.+.+++..||.+..- + .+...+|++|-|..-..+.++.
T Consensus 85 eYg~~G~Gr~R~YlHt~dEAvp~nq~PGTFTpW~~l-pe~sDvLFYEGLHGgvVt~~~nvAqHvDlliGvVPivNLEWIQ 163 (289)
T COG3954 85 EYGQSGKGRSRKYLHTYDEAVPWNQVPGTFTPWQPL-PEPTDVLFYEGLHGGVVTPQHNVAQHVDLLVGVVPIVNLEWIQ 163 (289)
T ss_pred HhcccCCcchhhhhhchhhcCccCCCCCCCCCcccC-CCccceeeeeccccceecCcccHhhhhceeeeeeeEeeHHHHH
Confidence 65432111 111244445555555543 3557899999988764 2 4778999999999888999999
Q ss_pred HHHHHHHHhCCCHHHHHHHHHhccccchhhcccCCcCcCcEEE
Q 006117 195 RVFRDIQRVGQEPEEIIHQISETVYPMYKAFIEPDLQTAHIKI 237 (660)
Q Consensus 195 RI~RDv~eRGrs~E~Vl~qy~~~v~P~~~~fIeP~k~~ADiII 237 (660)
++.||..+||.+.|.|++.+.+ ..|+|..||-|+....|+-.
T Consensus 164 K~~RDt~~RGhSrEAVmDsivR-sMdDYinyItPQFSrThINF 205 (289)
T COG3954 164 KLIRDTSERGHSREAVMDSVVR-SMDDYINYITPQFSRTHINF 205 (289)
T ss_pred HHHhcccccCccHHHHHHHHHH-hhhhHHhhcCccccccccce
Confidence 9999999999999999998854 47999999999988888754
No 436
>TIGR02322 phosphon_PhnN phosphonate metabolism protein/1,5-bisphosphokinase (PRPP-forming) PhnN. Members of this family resemble PhnN of phosphonate utilization operons, where different such operons confer the ability to use somewhat different profiles of C-P bond-containing compounds (see PubMed:15231805), including phosphites as well as phosphonates. PhnN in E. coli shows considerable homology to guanylate kinases (EC 2.7.4.8), and has actually been shown to act as a ribose 1,5-bisphosphokinase (PRPP forming). This suggests an analogous kinase reaction for phosphonate metabolism, converting 5-phosphoalpha-1-(methylphosphono)ribose to methylphosphono-PRPP.
Probab=98.34 E-value=3e-06 Score=82.26 Aligned_cols=24 Identities=38% Similarity=0.564 Sum_probs=22.5
Q ss_pred EEEEECCCCCcHHHHHHHHHHhCC
Q 006117 68 LVGVAGPSGAGKTVFTEKVLNFMP 91 (660)
Q Consensus 68 IIGI~GpSGSGKSTLak~L~~lLp 91 (660)
+++|+|+|||||||+++.|+..++
T Consensus 3 ~~~i~G~sGsGKttl~~~l~~~~~ 26 (179)
T TIGR02322 3 LIYVVGPSGAGKDTLLDYARARLA 26 (179)
T ss_pred EEEEECCCCCCHHHHHHHHHHHcC
Confidence 799999999999999999999874
No 437
>PRK14737 gmk guanylate kinase; Provisional
Probab=98.32 E-value=2.3e-06 Score=85.01 Aligned_cols=160 Identities=14% Similarity=0.143 Sum_probs=80.6
Q ss_pred cceEEEEECCCCCcHHHHHHHHHHhCCCceEEEecCcccccc-----cccccCCCCCCCchhhHHHHHHhhhcCcccccc
Q 006117 65 GIILVGVAGPSGAGKTVFTEKVLNFMPSIAVITMDNYNDSSR-----IIDGNFDDPRLTDYDTLLENIRGLKEGKAVQVP 139 (660)
Q Consensus 65 ~~~IIGI~GpSGSGKSTLak~L~~lLp~~g~I~lDg~~~~~~-----~i~~vfq~p~l~d~~tl~e~L~~L~~Gk~I~~P 139 (660)
++++|.|+||||||||||++.|....|.. .....-.....+ ...|.|- +-.+.-..+..|..++.-
T Consensus 3 ~~~~ivl~GpsG~GK~tl~~~l~~~~~~~-~~~v~~TTR~~r~gE~~G~dY~fv--------s~~~F~~~i~~~~f~e~~ 73 (186)
T PRK14737 3 SPKLFIISSVAGGGKSTIIQALLEEHPDF-LFSISCTTRAPRPGDEEGKTYFFL--------TIEEFKKGIADGEFLEWA 73 (186)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHhcCCcc-ccccCccCCCCCCCCCCCceeEeC--------CHHHHHHHHHcCCeEEEE
Confidence 35699999999999999999998877532 111111111111 1222221 222223334445555443
Q ss_pred ccccccc-ccccceeeecCCccEEEEecceeecccccCCC-C--EEEEEEcChhHHHHHHHHHHHHHhCCCHHHHHHHHH
Q 006117 140 IYDFKSS-SRIGYRTLEVPSSRIVIIEGIYALSEKLRPLI-D--LRVSVTGGVHFDLVKRVFRDIQRVGQEPEEIIHQIS 215 (660)
Q Consensus 140 iyD~s~~-~rs~~~~~~v~~a~VVIVEGilaL~deLr~ll-D--lkIfVdad~dirLiRRI~RDv~eRGrs~E~Vl~qy~ 215 (660)
.|.-... .....-...+...+++|++...-....++..+ | +.|||.+|....+..|+.+ +.+.+.+++..++.
T Consensus 74 ~~~g~~YGt~~~~i~~~~~~g~~~i~d~~~~g~~~l~~~~~~~~~~Ifi~pps~e~l~~RL~~---R~~~s~e~i~~Rl~ 150 (186)
T PRK14737 74 EVHDNYYGTPKAFIEDAFKEGRSAIMDIDVQGAKIIKEKFPERIVTIFIEPPSEEEWEERLIH---RGTDSEESIEKRIE 150 (186)
T ss_pred EECCeeecCcHHHHHHHHHcCCeEEEEcCHHHHHHHHHhCCCCeEEEEEECCCHHHHHHHHHh---cCCCCHHHHHHHHH
Confidence 3332211 11010111234556777773222222233322 3 6899998764444444432 22346666666664
Q ss_pred hccccchhhcccCCcCcCcEEEeCCCCC
Q 006117 216 ETVYPMYKAFIEPDLQTAHIKIINKFNP 243 (660)
Q Consensus 216 ~~v~P~~~~fIeP~k~~ADiII~N~~~p 243 (660)
.. .+. ......+|.||.|+ +.
T Consensus 151 ~~-~~e-----~~~~~~~D~vI~N~-dl 171 (186)
T PRK14737 151 NG-IIE-----LDEANEFDYKIIND-DL 171 (186)
T ss_pred HH-HHH-----HhhhccCCEEEECc-CH
Confidence 32 222 22357899999987 54
No 438
>TIGR02173 cyt_kin_arch cytidylate kinase, putative. Proteins in this family are believed to be cytidylate kinase. Members of this family are found in the archaea and in spirochaetes, and differ considerably from the common bacterial form of cytidylate kinase described by TIGR00017.
Probab=98.31 E-value=2.1e-06 Score=82.03 Aligned_cols=147 Identities=18% Similarity=0.217 Sum_probs=75.5
Q ss_pred EEEEECCCCCcHHHHHHHHHHhCCCceEEEecCcccc-cccccccCCCCCCCchhhHHHHHHhhhcCccccccccccccc
Q 006117 68 LVGVAGPSGAGKTVFTEKVLNFMPSIAVITMDNYNDS-SRIIDGNFDDPRLTDYDTLLENIRGLKEGKAVQVPIYDFKSS 146 (660)
Q Consensus 68 IIGI~GpSGSGKSTLak~L~~lLp~~g~I~lDg~~~~-~~~i~~vfq~p~l~d~~tl~e~L~~L~~Gk~I~~PiyD~s~~ 146 (660)
+|+|.|++||||||+++.|++.+ +...++.|..... ....+. +...+.... .. .|.+.....
T Consensus 2 iI~i~G~~GSGKstia~~la~~l-g~~~~~~~~~~~~~~~~~g~--------~~~~~~~~~---~~-----~~~~~~~~~ 64 (171)
T TIGR02173 2 IITISGPPGSGKTTVAKILAEKL-SLKLISAGDIFRELAAKMGL--------DLIEFLNYA---EE-----NPEIDKKID 64 (171)
T ss_pred EEEEECCCCCCHHHHHHHHHHHc-CCceecHHHHHHHHHHHcCC--------CHHHHHHHH---hc-----CcHHHHHHH
Confidence 79999999999999999999987 3334554432110 000000 000000000 00 000000000
Q ss_pred ccccceeeecCCccEEEEecceeecccccCCCCEEEEEEcChhHHHHHHHHHHHHHhCCCHHHHHHHHHhccccchhhcc
Q 006117 147 SRIGYRTLEVPSSRIVIIEGIYALSEKLRPLIDLRVSVTGGVHFDLVKRVFRDIQRVGQEPEEIIHQISETVYPMYKAFI 226 (660)
Q Consensus 147 ~rs~~~~~~v~~a~VVIVEGilaL~deLr~llDlkIfVdad~dirLiRRI~RDv~eRGrs~E~Vl~qy~~~v~P~~~~fI 226 (660)
.... ........+|++|.+... .+...+|++|||++|.+++..|...| .|.+.+++..++........+.|.
T Consensus 65 ~~i~---~~~~~~~~~Vi~g~~~~~-~~~~~~d~~v~v~a~~~~r~~R~~~R----~~~s~~~a~~~~~~~d~~~~~~~~ 136 (171)
T TIGR02173 65 RRIH---EIALKEKNVVLESRLAGW-IVREYADVKIWLKAPLEVRARRIAKR----EGKSLTVARSETIEREESEKRRYL 136 (171)
T ss_pred HHHH---HHHhcCCCEEEEecccce-eecCCcCEEEEEECCHHHHHHHHHHc----cCCCHHHHHHHHHHHHHHHHHHHH
Confidence 0000 001122456779876532 22456889999999988876554444 477888877776655443322222
Q ss_pred cC------CcCcCcEEEeC
Q 006117 227 EP------DLQTAHIKIIN 239 (660)
Q Consensus 227 eP------~k~~ADiII~N 239 (660)
.. ....-|++|+.
T Consensus 137 ~~~~~~~~~~~~ydl~i~t 155 (171)
T TIGR02173 137 KFYGIDIDDLSIYDLVINT 155 (171)
T ss_pred HHhCCCccccccccEEEEC
Confidence 21 22444777753
No 439
>PRK12269 bifunctional cytidylate kinase/ribosomal protein S1; Provisional
Probab=98.31 E-value=2.1e-06 Score=102.57 Aligned_cols=79 Identities=9% Similarity=-0.006 Sum_probs=65.8
Q ss_pred EEEEecceeecccccCCCCEEEEEEcChhHHHHHHHHHHHHHhCCCHHHHHHHHHhccccchhhcccCCcCcCcEEEeCC
Q 006117 161 IVIIEGIYALSEKLRPLIDLRVSVTGGVHFDLVKRVFRDIQRVGQEPEEIIHQISETVYPMYKAFIEPDLQTAHIKIINK 240 (660)
Q Consensus 161 VVIVEGilaL~deLr~llDlkIfVdad~dirLiRRI~RDv~eRGrs~E~Vl~qy~~~v~P~~~~fIeP~k~~ADiII~N~ 240 (660)
-+|+||--+. .-+++..|+|||++++.++|..||...... ..+.++++.++.++++-+..+-+.|.+...|.++.++
T Consensus 191 ~~V~eGRDig-TvVfPdA~~KifL~As~e~RA~RR~~e~~~--~~~~~~i~~~i~~RD~~D~~R~~~pL~~a~dAi~iDt 267 (863)
T PRK12269 191 RVVCEGRDLT-TVVFVDADLKCYLDASIEARVARRWAQGTS--RLSKQELEQRMRARDAHDRARTVGGLRCAPDALYVDT 267 (863)
T ss_pred CEEEECCCCc-cEECCCCCEEEEEECCHHHHHHHHHHhhhc--cCCHHHHHHHHHHhhhhhccCccCCCccCCCeEEEEC
Confidence 4777876544 357888999999999999999999876542 3688999999999999999999999999999998776
Q ss_pred CC
Q 006117 241 FN 242 (660)
Q Consensus 241 ~~ 242 (660)
.+
T Consensus 268 s~ 269 (863)
T PRK12269 268 SC 269 (863)
T ss_pred CC
Confidence 53
No 440
>PRK04182 cytidylate kinase; Provisional
Probab=98.30 E-value=3.1e-06 Score=81.42 Aligned_cols=147 Identities=18% Similarity=0.260 Sum_probs=71.8
Q ss_pred EEEEECCCCCcHHHHHHHHHHhCCCceEEEecCcccc-cccccccCCCCCCCchhhHHHHHHhhhcCccccccccccccc
Q 006117 68 LVGVAGPSGAGKTVFTEKVLNFMPSIAVITMDNYNDS-SRIIDGNFDDPRLTDYDTLLENIRGLKEGKAVQVPIYDFKSS 146 (660)
Q Consensus 68 IIGI~GpSGSGKSTLak~L~~lLp~~g~I~lDg~~~~-~~~i~~vfq~p~l~d~~tl~e~L~~L~~Gk~I~~PiyD~s~~ 146 (660)
+|+|+|++||||||+++.|+..+ +...+..|+.... ....+. +...+.+ . +. ..|.++....
T Consensus 2 ~I~i~G~~GsGKstia~~la~~l-g~~~id~~~~~~~~~~~~g~--------~~~~~~~----~--~~--~~~~~~~~~~ 64 (180)
T PRK04182 2 IITISGPPGSGKTTVARLLAEKL-GLKHVSAGEIFRELAKERGM--------SLEEFNK----Y--AE--EDPEIDKEID 64 (180)
T ss_pred EEEEECCCCCCHHHHHHHHHHHc-CCcEecHHHHHHHHHHHcCC--------CHHHHHH----H--hh--cCchHHHHHH
Confidence 79999999999999999999887 3334443332110 000000 0000000 0 00 0011111100
Q ss_pred ccccceeeecC-CccEEEEecceeecccccCCCCEEEEEEcChhHHHHHHHHHHHHHhCCCHHHHHHHHHhccccc---h
Q 006117 147 SRIGYRTLEVP-SSRIVIIEGIYALSEKLRPLIDLRVSVTGGVHFDLVKRVFRDIQRVGQEPEEIIHQISETVYPM---Y 222 (660)
Q Consensus 147 ~rs~~~~~~v~-~a~VVIVEGilaL~deLr~llDlkIfVdad~dirLiRRI~RDv~eRGrs~E~Vl~qy~~~v~P~---~ 222 (660)
.. ..... ....+|++|.+... -+.+..++.|||++|.+++..|...| .+++.++....+.....+. |
T Consensus 65 ~~----~~~~~~~~~~~Vi~g~~~~~-~~~~~~~~~V~l~a~~e~~~~Rl~~r----~~~~~~~a~~~~~~~d~~~~~~~ 135 (180)
T PRK04182 65 RR----QLEIAEKEDNVVLEGRLAGW-MAKDYADLKIWLKAPLEVRAERIAER----EGISVEEALEETIEREESEAKRY 135 (180)
T ss_pred HH----HHHHHhcCCCEEEEEeecce-EecCCCCEEEEEECCHHHHHHHHHhc----cCCCHHHHHHHHHHHHHHHHHHH
Confidence 00 00111 22345677765432 11133789999999988865544333 3556665544433332222 1
Q ss_pred hhcc---cCCcCcCcEEEeCC
Q 006117 223 KAFI---EPDLQTAHIKIINK 240 (660)
Q Consensus 223 ~~fI---eP~k~~ADiII~N~ 240 (660)
..+. ++....+|++|+++
T Consensus 136 ~~~~~~~~~~~~~~d~~idt~ 156 (180)
T PRK04182 136 KEYYGIDIDDLSIYDLVINTS 156 (180)
T ss_pred HHHhCCCccccccccEEEECC
Confidence 2121 34457899999754
No 441
>PRK05541 adenylylsulfate kinase; Provisional
Probab=98.26 E-value=1.8e-06 Score=83.88 Aligned_cols=36 Identities=22% Similarity=0.360 Sum_probs=29.2
Q ss_pred cceEEEEECCCCCcHHHHHHHHHHhC--CCceEEEecC
Q 006117 65 GIILVGVAGPSGAGKTVFTEKVLNFM--PSIAVITMDN 100 (660)
Q Consensus 65 ~~~IIGI~GpSGSGKSTLak~L~~lL--p~~g~I~lDg 100 (660)
++.+|.+.|++||||||+++.|...+ +..+.+.+|+
T Consensus 6 ~~~~I~i~G~~GsGKst~a~~l~~~l~~~~~~~~~~~~ 43 (176)
T PRK05541 6 NGYVIWITGLAGSGKTTIAKALYERLKLKYSNVIYLDG 43 (176)
T ss_pred CCCEEEEEcCCCCCHHHHHHHHHHHHHHcCCcEEEEec
Confidence 34599999999999999999999987 3455666655
No 442
>cd02019 NK Nucleoside/nucleotide kinase (NK) is a protein superfamily consisting of multiple families of enzymes that share structural similarity and are functionally related to the catalysis of the reversible phosphate group transfer from nucleoside triphosphates to nucleosides/nucleotides, nucleoside monophosphates, or sugars. Members of this family play a wide variety of essential roles in nucleotide metabolism, the biosynthesis of coenzymes and aromatic compounds, as well as the metabolism of sugar and sulfate.
Probab=98.25 E-value=1.9e-06 Score=71.95 Aligned_cols=59 Identities=32% Similarity=0.665 Sum_probs=45.9
Q ss_pred EEEEECCCCCcHHHHHHHHHHhCCCceEEEecCcccccccccccCCCCCCCchhhHHHHHHhhhcCcccccccccccccc
Q 006117 68 LVGVAGPSGAGKTVFTEKVLNFMPSIAVITMDNYNDSSRIIDGNFDDPRLTDYDTLLENIRGLKEGKAVQVPIYDFKSSS 147 (660)
Q Consensus 68 IIGI~GpSGSGKSTLak~L~~lLp~~g~I~lDg~~~~~~~i~~vfq~p~l~d~~tl~e~L~~L~~Gk~I~~PiyD~s~~~ 147 (660)
+|+|+|++||||||+++.|...+.+.....+++
T Consensus 1 ~i~i~G~~gsGKst~~~~l~~~l~~~~~~~i~~----------------------------------------------- 33 (69)
T cd02019 1 IIAITGGSGSGKSTVAKKLAEQLGGRSVVVLDE----------------------------------------------- 33 (69)
T ss_pred CEEEECCCCCCHHHHHHHHHHHhcCCCEEEEeE-----------------------------------------------
Confidence 478999999999999999999851010111110
Q ss_pred cccceeeecCCccEEEEecceeecc----cccCCCCEEEEEEc
Q 006117 148 RIGYRTLEVPSSRIVIIEGIYALSE----KLRPLIDLRVSVTG 186 (660)
Q Consensus 148 rs~~~~~~v~~a~VVIVEGilaL~d----eLr~llDlkIfVda 186 (660)
++|+||.+...+ ++.+.+|++||+++
T Consensus 34 -------------~~I~eg~~~~~~~~~~~~~~~~d~~Iyld~ 63 (69)
T cd02019 34 -------------IVILEGLYASYKSRDARIRDLADLKIYLDA 63 (69)
T ss_pred -------------EEEecchhhhhhhHHhhccccccEEEEEEe
Confidence 899999999975 58899999999997
No 443
>KOG0062 consensus ATPase component of ABC transporters with duplicated ATPase domains/Translation elongation factor EF-3b [Amino acid transport and metabolism; Translation, ribosomal structure and biogenesis]
Probab=98.25 E-value=2.9e-07 Score=102.41 Aligned_cols=133 Identities=18% Similarity=0.163 Sum_probs=86.4
Q ss_pred cceeeeecCceEEEEecceeeccCCcceEEEEECCCCCcHHHHHHHHHHh----CCCceEEEecCcc-ccc------ccc
Q 006117 40 EDTLSFEKGFFIVIRACQLLAQKNHGIILVGVAGPSGAGKTVFTEKVLNF----MPSIAVITMDNYN-DSS------RII 108 (660)
Q Consensus 40 ~~~ls~~~g~~~vL~~Isl~i~~ge~~~IIGI~GpSGSGKSTLak~L~~l----Lp~~g~I~lDg~~-~~~------~~i 108 (660)
...|+..+|.+.+|.+.++.+..|. -.|++|+||+|||||+++|+.- +|..-.+.-|... ... ...
T Consensus 83 ~~~fdLa~G~k~LL~~a~L~L~~Gr---RYGLvGrNG~GKsTLLRaia~~~v~~f~veqE~~g~~t~~~~~~l~~D~~~~ 159 (582)
T KOG0062|consen 83 IDNFDLAYGGKILLNKANLTLSRGR---RYGLVGRNGIGKSTLLRAIANGQVSGFHVEQEVRGDDTEALQSVLESDTERL 159 (582)
T ss_pred eeeeeeeecchhhhcCCceeeeccc---ccceeCCCCCcHHHHHHHHHhcCcCccCchhheeccchHHHhhhhhccHHHH
Confidence 3467788889999999999999999 9999999999999999999983 1322222222210 000 112
Q ss_pred cccCCCCCCCchhhHHHHHHhhhcCc-----ccccccccccccccccceeeecCCccEEEEecceeecccccCCCCE
Q 006117 109 DGNFDDPRLTDYDTLLENIRGLKEGK-----AVQVPIYDFKSSSRIGYRTLEVPSSRIVIIEGIYALSEKLRPLIDL 180 (660)
Q Consensus 109 ~~vfq~p~l~d~~tl~e~L~~L~~Gk-----~I~~PiyD~s~~~rs~~~~~~v~~a~VVIVEGilaL~deLr~llDl 180 (660)
.++.+++.+....++.+....+..|- -...|. ...++++..+++.++.+..++-+++.||+.+++|+
T Consensus 160 dfl~~e~~l~~~~~l~ei~~~~L~glGFt~emq~~pt-----~slSGGWrMrlaLARAlf~~pDlLLLDEPTNhLDv 231 (582)
T KOG0062|consen 160 DFLAEEKELLAGLTLEEIYDKILAGLGFTPEMQLQPT-----KSLSGGWRMRLALARALFAKPDLLLLDEPTNHLDV 231 (582)
T ss_pred HHHHhhhhhhccchHHHHHHHHHHhCCCCHHHHhccc-----cccCcchhhHHHHHHHHhcCCCEEeecCCcccchh
Confidence 23344433322212232222122221 123333 34557788889999999999999999999999995
No 444
>TIGR03263 guanyl_kin guanylate kinase. Members of this family are the enzyme guanylate kinase, also called GMP kinase. This enzyme transfers a phosphate from ATP to GMP, yielding ADP and GDP.
Probab=98.24 E-value=3.6e-06 Score=81.61 Aligned_cols=24 Identities=38% Similarity=0.731 Sum_probs=22.7
Q ss_pred EEEEECCCCCcHHHHHHHHHHhCC
Q 006117 68 LVGVAGPSGAGKTVFTEKVLNFMP 91 (660)
Q Consensus 68 IIGI~GpSGSGKSTLak~L~~lLp 91 (660)
+|+|+||+||||||+++.|++.++
T Consensus 3 ii~l~G~~GsGKsTl~~~L~~~~~ 26 (180)
T TIGR03263 3 LIVISGPSGVGKSTLVKALLEEDP 26 (180)
T ss_pred EEEEECCCCCCHHHHHHHHHccCc
Confidence 899999999999999999999874
No 445
>COG4615 PvdE ABC-type siderophore export system, fused ATPase and permease components [Secondary metabolites biosynthesis, transport, and catabolism / Inorganic ion transport and metabolism]
Probab=98.24 E-value=2.7e-07 Score=100.07 Aligned_cols=64 Identities=23% Similarity=0.378 Sum_probs=52.2
Q ss_pred EEecceeeccCCcceEEEEECCCCCcHHHHHHHHHHhC-CCceEEEecCccccc-------ccccccCCCCCCCc
Q 006117 53 IRACQLLAQKNHGIILVGVAGPSGAGKTVFTEKVLNFM-PSIAVITMDNYNDSS-------RIIDGNFDDPRLTD 119 (660)
Q Consensus 53 L~~Isl~i~~ge~~~IIGI~GpSGSGKSTLak~L~~lL-p~~g~I~lDg~~~~~-------~~i~~vfq~p~l~d 119 (660)
+.-|++.+.+|+ +|-|+|.|||||||+++.|.|+. |++|.|.+||..... .-...+|.+..+||
T Consensus 339 vgPiNl~ikrGe---lvFliG~NGsGKST~~~LLtGL~~PqsG~I~ldg~pV~~e~ledYR~LfSavFsDyhLF~ 410 (546)
T COG4615 339 VGPINLTIKRGE---LVFLIGGNGSGKSTLAMLLTGLYQPQSGEILLDGKPVSAEQLEDYRKLFSAVFSDYHLFD 410 (546)
T ss_pred ecceeeEEecCc---EEEEECCCCCcHHHHHHHHhcccCCCCCceeECCccCCCCCHHHHHHHHHHHhhhHhhhH
Confidence 467899999999 99999999999999999999999 999999999985443 12344565555543
No 446
>cd03278 ABC_SMC_barmotin Barmotin is a tight junction-associated protein expressed in rat epithelial cells which is thought to have an important regulatory role in tight junction barrier function. Barmotin belongs to the SMC protein family. SMC proteins are large (approximately 110 to 170 kDa), and each is arranged into five recognizable domains. Amino-acid sequence homology of SMC proteins between species is largely confined to the amino- and carboxy-terminal globular domains. The amino-terminal domain contains a 'Walker A' nucleotide-binding domain (GxxGxGKS/T, in the single-letter amino-acid code), which by mutational studies has been shown to be essential in several proteins. The carboxy-terminal domain contains a sequence (the DA-box) that resembles a 'Walker B' motif, and a motif with homology to the signature sequence of the ATP-binding cassette (ABC) family of ATPases. The sequence homology within the carboxy-terminal domain is relatively high within the SMC1-SMC4 group, w
Probab=98.23 E-value=3.2e-07 Score=91.64 Aligned_cols=115 Identities=11% Similarity=0.112 Sum_probs=67.3
Q ss_pred EecceeeccCCcceEEEEECCCCCcHHHHHHHHHHhCCCc----------eEEEecCccc----ccccccccCCCCCCCc
Q 006117 54 RACQLLAQKNHGIILVGVAGPSGAGKTVFTEKVLNFMPSI----------AVITMDNYND----SSRIIDGNFDDPRLTD 119 (660)
Q Consensus 54 ~~Isl~i~~ge~~~IIGI~GpSGSGKSTLak~L~~lLp~~----------g~I~lDg~~~----~~~~i~~vfq~p~l~d 119 (660)
+++++.+.+| +++|+||||||||||+++|.++++.. +.+.+++... ....++++||++..+.
T Consensus 14 ~~~~l~~~~g----~~~i~G~nGsGKStll~al~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~vfq~~~~~~ 89 (197)
T cd03278 14 DKTTIPFPPG----LTAIVGPNGSGKSNIIDAIRWVLGEQSAKSLRGEKMSDVIFAGSETRKPANFAEVTLTFDNSDGRY 89 (197)
T ss_pred CCeeeecCCC----cEEEECCCCCCHHHHHHHHHHHhccccchhhcccCHHHHhccCCCCCCCCceEEEEEEEEcCCCce
Confidence 5667776653 88999999999999999999887311 2344444322 1245789999987751
Q ss_pred ----hhhHHHHHHhhhcCcccccccccccccccccceeeecCCccEEE---E-ecceeecccccCCCCE
Q 006117 120 ----YDTLLENIRGLKEGKAVQVPIYDFKSSSRIGYRTLEVPSSRIVI---I-EGIYALSEKLRPLIDL 180 (660)
Q Consensus 120 ----~~tl~e~L~~L~~Gk~I~~PiyD~s~~~rs~~~~~~v~~a~VVI---V-EGilaL~deLr~llDl 180 (660)
...+.+.+.. .. ..+...+..++++...+..+..++ . +..+++.||+...+|.
T Consensus 90 ~~~~~~~~~~~l~~---~~-----~~~~~~~~LS~G~kqrl~la~~l~~~~~~~~~illlDEP~~~LD~ 150 (197)
T cd03278 90 SIISQGDVSEIIEA---PG-----KKVQRLSLLSGGEKALTALALLFAIFRVRPSPFCVLDEVDAALDD 150 (197)
T ss_pred eEEehhhHHHHHhC---CC-----ccccchhhcCHHHHHHHHHHHHHHHhccCCCCEEEEeCCcccCCH
Confidence 1122222222 11 112222334444444554444433 2 3356667898888886
No 447
>cd03270 ABC_UvrA_I The excision repair protein UvrA domain I; Nucleotide excision repair in eubacteria is a process that repairs DNA damage by the removal of a 12-13-mer oligonucleotide containing the lesion. Recognition and cleavage of the damaged DNA is a multistep ATP-dependent reaction that requires the UvrA, UvrB, and UvrC proteins. Both UvrA and UvrB are ATPases, with UvrA having two ATP binding sites, which have the characteristic signature of the family of ABC proteins, and UvrB having one ATP binding site that is structurally related to that of helicases.
Probab=98.20 E-value=1.4e-06 Score=88.75 Aligned_cols=34 Identities=24% Similarity=0.328 Sum_probs=30.9
Q ss_pred cCceEEEEecceeeccCCcceEEEEECCCCCcHHHHH
Q 006117 47 KGFFIVIRACQLLAQKNHGIILVGVAGPSGAGKTVFT 83 (660)
Q Consensus 47 ~g~~~vL~~Isl~i~~ge~~~IIGI~GpSGSGKSTLa 83 (660)
.....+|+++||.+++|+ ++||+|+||||||||+
T Consensus 5 ~~~~~~l~~vsl~i~~Ge---~~~l~G~sGsGKSTL~ 38 (226)
T cd03270 5 GAREHNLKNVDVDIPRNK---LVVITGVSGSGKSSLA 38 (226)
T ss_pred cchhhccccceeecCCCc---EEEEEcCCCCCHHHHH
Confidence 344568999999999999 9999999999999996
No 448
>PRK10078 ribose 1,5-bisphosphokinase; Provisional
Probab=98.17 E-value=7.4e-06 Score=80.66 Aligned_cols=23 Identities=30% Similarity=0.472 Sum_probs=22.1
Q ss_pred EEEEECCCCCcHHHHHHHHHHhC
Q 006117 68 LVGVAGPSGAGKTVFTEKVLNFM 90 (660)
Q Consensus 68 IIGI~GpSGSGKSTLak~L~~lL 90 (660)
+++|+||||||||||+++|++.+
T Consensus 4 ~i~l~G~sGsGKsTl~~~l~~~~ 26 (186)
T PRK10078 4 LIWLMGPSGSGKDSLLAALRQRE 26 (186)
T ss_pred EEEEECCCCCCHHHHHHHHhccC
Confidence 89999999999999999999987
No 449
>cd03272 ABC_SMC3_euk Eukaryotic SMC3 proteins; SMC proteins are large (approximately 110 to 170 kDa), and each is arranged into five recognizable domains. Amino-acid sequence homology of SMC proteins between species is largely confined to the amino- and carboxy-terminal globular domains. The amino-terminal domain contains a 'Walker A' nucleotide-binding domain (GxxGxGKS/T, in the single-letter amino-acid code), which by mutational studies has been shown to be essential in several proteins. The carboxy-terminal domain contains a sequence (the DA-box) that resembles a 'Walker B' motif, and a motif with homology to the signature sequence of the ATP-binding cassette (ABC) family of ATPases. The sequence homology within the carboxy-terminal domain is relatively high within the SMC1-SMC4 group, whereas SMC5 and SMC6 show some divergence in both of these sequences. In eukaryotic cells, the proteins are found as heterodimers of SMC1 paired with SMC3, SMC2 with SMC4, and SMC5 with SMC6 (fo
Probab=98.13 E-value=1e-06 Score=89.64 Aligned_cols=34 Identities=24% Similarity=0.200 Sum_probs=26.6
Q ss_pred CceEEEEecceeeccCCcceEEEEECCCCCcHHHHHHHHHHh
Q 006117 48 GFFIVIRACQLLAQKNHGIILVGVAGPSGAGKTVFTEKVLNF 89 (660)
Q Consensus 48 g~~~vL~~Isl~i~~ge~~~IIGI~GpSGSGKSTLak~L~~l 89 (660)
+...++.+++ ++ +++|+||||||||||+++|+..
T Consensus 13 ~~~~~~~~~~-----~~---~~~i~GpNGsGKStll~ai~~~ 46 (243)
T cd03272 13 KDQTVIEPFS-----PK---HNVVVGRNGSGKSNFFAAIRFV 46 (243)
T ss_pred ccCcccccCC-----CC---cEEEECCCCCCHHHHHHHHHHH
Confidence 3444555554 56 9999999999999999999843
No 450
>PRK04040 adenylate kinase; Provisional
Probab=98.13 E-value=4.7e-06 Score=82.92 Aligned_cols=36 Identities=25% Similarity=0.429 Sum_probs=30.3
Q ss_pred ceEEEEECCCCCcHHHHHHHHHHhCC-CceEEEecCc
Q 006117 66 IILVGVAGPSGAGKTVFTEKVLNFMP-SIAVITMDNY 101 (660)
Q Consensus 66 ~~IIGI~GpSGSGKSTLak~L~~lLp-~~g~I~lDg~ 101 (660)
+.+|+|+|.+||||||+++.|+..++ +...++++++
T Consensus 2 ~~~i~v~G~pG~GKtt~~~~l~~~l~~~~~~~~~g~~ 38 (188)
T PRK04040 2 MKVVVVTGVPGVGKTTVLNKALEKLKEDYKIVNFGDV 38 (188)
T ss_pred CeEEEEEeCCCCCHHHHHHHHHHHhccCCeEEecchH
Confidence 46899999999999999999999985 5566666665
No 451
>PRK00300 gmk guanylate kinase; Provisional
Probab=98.12 E-value=1.1e-05 Score=79.89 Aligned_cols=27 Identities=37% Similarity=0.685 Sum_probs=24.6
Q ss_pred cCCcceEEEEECCCCCcHHHHHHHHHHhCC
Q 006117 62 KNHGIILVGVAGPSGAGKTVFTEKVLNFMP 91 (660)
Q Consensus 62 ~ge~~~IIGI~GpSGSGKSTLak~L~~lLp 91 (660)
+|. +|+|+||||||||||+++|++.++
T Consensus 4 ~g~---~i~i~G~sGsGKstl~~~l~~~~~ 30 (205)
T PRK00300 4 RGL---LIVLSGPSGAGKSTLVKALLERDP 30 (205)
T ss_pred CCC---EEEEECCCCCCHHHHHHHHHhhCc
Confidence 455 999999999999999999999874
No 452
>KOG0054 consensus Multidrug resistance-associated protein/mitoxantrone resistance protein, ABC superfamily [Secondary metabolites biosynthesis, transport and catabolism]
Probab=98.12 E-value=7.9e-07 Score=109.54 Aligned_cols=129 Identities=19% Similarity=0.247 Sum_probs=90.8
Q ss_pred eeeeec-CceEEEEecceeeccCCcceEEEEECCCCCcHHHHHHHHHHhC-CCceEEEecCcccccccccccCCCCCCCc
Q 006117 42 TLSFEK-GFFIVIRACQLLAQKNHGIILVGVAGPSGAGKTVFTEKVLNFM-PSIAVITMDNYNDSSRIIDGNFDDPRLTD 119 (660)
Q Consensus 42 ~ls~~~-g~~~vL~~Isl~i~~ge~~~IIGI~GpSGSGKSTLak~L~~lL-p~~g~I~lDg~~~~~~~i~~vfq~p~l~d 119 (660)
+++.+. +....|++|+|.+++|+ .+||+|+.|||||+|+.+|.|.+ ...|.+.+.|- ++|++|.|.+++
T Consensus 525 sfsW~~~~~~~tL~dIn~~i~~G~---lvaVvG~vGsGKSSLL~AiLGEm~~~sG~v~v~gs------iaYv~Q~pWI~n 595 (1381)
T KOG0054|consen 525 SFSWDSESPEPTLKDINFEIKKGQ---LVAVVGPVGSGKSSLLSAILGEMPKLSGSVAVNGS------VAYVPQQPWIQN 595 (1381)
T ss_pred eEecCCCCCcccccceeEEecCCC---EEEEECCCCCCHHHHHHHHhcCcccccceEEEcCe------EEEeccccHhhC
Confidence 344443 23348999999999999 99999999999999999999999 57888888875 778899888776
Q ss_pred hhhHHHHHHhhhcC---------------cccc-ccccccc-cc----ccccceeeecCCccEEEEecceeecccccCCC
Q 006117 120 YDTLLENIRGLKEG---------------KAVQ-VPIYDFK-SS----SRIGYRTLEVPSSRIVIIEGIYALSEKLRPLI 178 (660)
Q Consensus 120 ~~tl~e~L~~L~~G---------------k~I~-~PiyD~s-~~----~rs~~~~~~v~~a~VVIVEGilaL~deLr~ll 178 (660)
.+++||+..-..- ++++ .|.=|.. .+ ..+|+|++++..++.|--+.-..+.|++...+
T Consensus 596 -gTvreNILFG~~~d~~rY~~Vi~aC~L~~Dle~Lp~GD~TeIGErGinLSGGQKqRIsLARAVY~~adIYLLDDplSAV 674 (1381)
T KOG0054|consen 596 -GTVRENILFGSPYDEERYDKVIKACALKKDLEILPFGDLTEIGERGINLSGGQKQRISLARAVYQDADIYLLDDPLSAV 674 (1381)
T ss_pred -CcHHHhhhcCccccHHHHHHHHHHccCHhHHhhcCCCCcceecCCccCCcHhHHHHHHHHHHHhccCCEEEEcCcchhh
Confidence 5788887542211 0110 1211111 11 23567888887777777777666667777777
Q ss_pred CE
Q 006117 179 DL 180 (660)
Q Consensus 179 Dl 180 (660)
|.
T Consensus 675 Da 676 (1381)
T KOG0054|consen 675 DA 676 (1381)
T ss_pred hH
Confidence 65
No 453
>TIGR01360 aden_kin_iso1 adenylate kinase, isozyme 1 subfamily. Members of this family are adenylate kinase, EC 2.7.4.3. This clade is found only in eukaryotes and includes human adenylate kinase isozyme 1 (myokinase). Within the adenylate kinase superfamily, this set appears specifically closely related to a subfamily of eukaryotic UMP-CMP kinases (TIGR01359), rather than to the large clade of bacterial, archaeal, and eukaryotic adenylate kinase family members in TIGR01351.
Probab=98.09 E-value=6.4e-06 Score=79.87 Aligned_cols=110 Identities=15% Similarity=0.176 Sum_probs=59.0
Q ss_pred eEEEEECCCCCcHHHHHHHHHHhCCCceEEEecCcccc--------cccccccCCCCCCCchhhHHHHHHhhhcCccccc
Q 006117 67 ILVGVAGPSGAGKTVFTEKVLNFMPSIAVITMDNYNDS--------SRIIDGNFDDPRLTDYDTLLENIRGLKEGKAVQV 138 (660)
Q Consensus 67 ~IIGI~GpSGSGKSTLak~L~~lLp~~g~I~lDg~~~~--------~~~i~~vfq~p~l~d~~tl~e~L~~L~~Gk~I~~ 138 (660)
.+|+|.|++||||||+++.|+..+ +.-.++.++.... ...+...++.....+..++.+++.....
T Consensus 4 ~ii~i~G~~GsGKsTl~~~l~~~~-g~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~------ 76 (188)
T TIGR01360 4 KIIFIVGGPGSGKGTQCEKIVEKY-GFTHLSTGDLLRAEVASGSERGKQLQAIMESGDLVPLDTVLDLLKDAMV------ 76 (188)
T ss_pred cEEEEECCCCCCHHHHHHHHHHHh-CCcEEeHHHHHHHHHhcCCHHHHHHHHHHHCCCCCCHHHHHHHHHHHHH------
Confidence 489999999999999999999776 2334444332110 0111122223333333333333322110
Q ss_pred ccccccccccccceeeecCCccEEEEecceeec------ccccCCCCEEEEEEcChhHHHHHHHHH
Q 006117 139 PIYDFKSSSRIGYRTLEVPSSRIVIIEGIYALS------EKLRPLIDLRVSVTGGVHFDLVKRVFR 198 (660)
Q Consensus 139 PiyD~s~~~rs~~~~~~v~~a~VVIVEGilaL~------deLr~llDlkIfVdad~dirLiRRI~R 198 (660)
..+.....+|+||..--. ..-....|+.||++++.++...|...|
T Consensus 77 ---------------~~~~~~~~~i~dg~~~~~~q~~~~~~~~~~~~~vi~l~~~~~~~~~Rl~~R 127 (188)
T TIGR01360 77 ---------------AALGTSKGFLIDGYPREVKQGEEFERRIGPPTLVLYFDCSEDTMVKRLLKR 127 (188)
T ss_pred ---------------cccCcCCeEEEeCCCCCHHHHHHHHHcCCCCCEEEEEECCHHHHHHHHHcc
Confidence 001223457778853211 111235789999999988755554444
No 454
>PRK08356 hypothetical protein; Provisional
Probab=98.01 E-value=6.3e-06 Score=81.83 Aligned_cols=34 Identities=24% Similarity=0.342 Sum_probs=27.2
Q ss_pred ceEEEEECCCCCcHHHHHHHHHHhCCCceEEEecCc
Q 006117 66 IILVGVAGPSGAGKTVFTEKVLNFMPSIAVITMDNY 101 (660)
Q Consensus 66 ~~IIGI~GpSGSGKSTLak~L~~lLp~~g~I~lDg~ 101 (660)
..+|+|+||+||||||+++.|.. . +...|++.+.
T Consensus 5 ~~~i~~~G~~gsGK~t~a~~l~~-~-g~~~is~~~~ 38 (195)
T PRK08356 5 KMIVGVVGKIAAGKTTVAKFFEE-K-GFCRVSCSDP 38 (195)
T ss_pred cEEEEEECCCCCCHHHHHHHHHH-C-CCcEEeCCCc
Confidence 45899999999999999999965 4 4447777654
No 455
>KOG0927 consensus Predicted transporter (ABC superfamily) [General function prediction only]
Probab=97.97 E-value=2.1e-06 Score=96.27 Aligned_cols=135 Identities=21% Similarity=0.265 Sum_probs=82.4
Q ss_pred ceeeeecCceEEEEecceeeccCCcceEEEEECCCCCcHHHHHHHHHHhC-CCceEEEecCccccc-------ccccccC
Q 006117 41 DTLSFEKGFFIVIRACQLLAQKNHGIILVGVAGPSGAGKTVFTEKVLNFM-PSIAVITMDNYNDSS-------RIIDGNF 112 (660)
Q Consensus 41 ~~ls~~~g~~~vL~~Isl~i~~ge~~~IIGI~GpSGSGKSTLak~L~~lL-p~~g~I~lDg~~~~~-------~~i~~vf 112 (660)
.++++.+..+.+++++.|.+..|+ -+||+|+|||||||++++|.+.. |.. -++|-|.... ..+..++
T Consensus 79 ~sls~s~~g~~l~kd~~~El~~g~---rygLiG~nG~Gkst~L~~i~~~e~P~p--~~~d~y~ls~e~~ps~~~av~~v~ 153 (614)
T KOG0927|consen 79 ESLSLSFHGVELIKDVTLELNRGR---RYGLIGPNGSGKSTFLRAIAGREVPIP--EHIDFYLLSREIEPSEKQAVQAVV 153 (614)
T ss_pred eeeeeccCCceeeeeeeEEecCCc---eEEEEcCCCCcHhHHHHHHhcCCCCCC--cccchhhhcccCCCchHHHHHHHh
Confidence 456666677889999999999999 99999999999999999999986 421 1222221111 0011111
Q ss_pred ---------------------CCCCCCchhhHHHHHH------------hhhcCcccccccccccccccccceeeecCCc
Q 006117 113 ---------------------DDPRLTDYDTLLENIR------------GLKEGKAVQVPIYDFKSSSRIGYRTLEVPSS 159 (660)
Q Consensus 113 ---------------------q~p~l~d~~tl~e~L~------------~L~~Gk~I~~PiyD~s~~~rs~~~~~~v~~a 159 (660)
++...-..+.+.+.+. .+..|-.......+..+...++++..++..+
T Consensus 154 ~~~~~e~~rle~~~E~l~~~~d~~~~~~l~~~~~r~~~~d~~~~~~k~~~il~glgf~~~m~~k~~~~~SgGwrmR~aLA 233 (614)
T KOG0927|consen 154 METDHERKRLEYLAEDLAQACDDKEKDELDELYERLDEMDNDTFEAKAAKILHGLGFLSEMQDKKVKDLSGGWRMRAALA 233 (614)
T ss_pred hhhHHHHHHHHHHHHHHHhhccchhhhHHHHHHHHHHhhCchhHHHHHHHHHHhcCCCHhHHHHHhhccCchHHHHHHHH
Confidence 0101100111111111 1111111111112333344566778889999
Q ss_pred cEEEEecceeecccccCCCCE
Q 006117 160 RIVIIEGIYALSEKLRPLIDL 180 (660)
Q Consensus 160 ~VVIVEGilaL~deLr~llDl 180 (660)
+++++++.+++.||+.+.+|+
T Consensus 234 r~Lf~kP~LLLLDEPtnhLDl 254 (614)
T KOG0927|consen 234 RALFQKPDLLLLDEPTNHLDL 254 (614)
T ss_pred HHHhcCCCEEEecCCccCCCH
Confidence 999999999999999999997
No 456
>cd03271 ABC_UvrA_II The excision repair protein UvrA domain II; Nucleotide excision repair in eubacteria is a process that repairs DNA damage by the removal of a 12-13-mer oligonucleotide containing the lesion. Recognition and cleavage of the damaged DNA is a multistep ATP-dependent reaction that requires the UvrA, UvrB, and UvrC proteins. Both UvrA and UvrB are ATPases, with UvrA having two ATP binding sites, which have the characteristic signature of the family of ABC proteins and UvrB having one ATP binding site that is structurally related to that of helicases.
Probab=97.95 E-value=6.8e-06 Score=86.03 Aligned_cols=34 Identities=21% Similarity=0.227 Sum_probs=31.1
Q ss_pred eEEEEecceeeccCCcceEEEEECCCCCcHHHHHHHH
Q 006117 50 FIVIRACQLLAQKNHGIILVGVAGPSGAGKTVFTEKV 86 (660)
Q Consensus 50 ~~vL~~Isl~i~~ge~~~IIGI~GpSGSGKSTLak~L 86 (660)
.+-|+++++.++.|. +++|+|+||||||||++.+
T Consensus 8 ~~nl~~v~~~ip~g~---~~~vtGvSGsGKStL~~~~ 41 (261)
T cd03271 8 ENNLKNIDVDIPLGV---LTCVTGVSGSGKSSLINDT 41 (261)
T ss_pred hhcCCCceeeccCCc---EEEEECCCCCchHHHHHHH
Confidence 345899999999999 9999999999999999866
No 457
>cd03240 ABC_Rad50 The catalytic domains of Rad50 are similar to the ATP-binding cassette of ABC transporters, but are not associated with membrane-spanning domains. The conserved ATP-binding motifs common to Rad50 and the ABC transporter family include the Walker A and Walker B motifs, the Q loop, a histidine residue in the switch region, a D-loop, and a conserved LSGG sequence. This conserved sequence, LSGG, is the most specific and characteristic motif of this family and is thus known as the ABC signature sequence.
Probab=97.91 E-value=3e-06 Score=85.10 Aligned_cols=111 Identities=16% Similarity=0.091 Sum_probs=62.6
Q ss_pred EEEEECCCCCcHHHHHHHHH----HhC-CCceEEEecCc----ccccccccccCCCCC-----CCchhhHHHHHHhhhcC
Q 006117 68 LVGVAGPSGAGKTVFTEKVL----NFM-PSIAVITMDNY----NDSSRIIDGNFDDPR-----LTDYDTLLENIRGLKEG 133 (660)
Q Consensus 68 IIGI~GpSGSGKSTLak~L~----~lL-p~~g~I~lDg~----~~~~~~i~~vfq~p~-----l~d~~tl~e~L~~L~~G 133 (660)
+++|.|+||||||||+++|. +.. ++.+.+..+.. ......+.+.|+++. .....++.+++.....+
T Consensus 24 ~~~i~G~NGsGKTTLl~ai~~~l~G~~~~~~~~~~~~~~~i~~~~~~~~v~~~f~~~~~~~~~v~r~~~~~~~~~~~~~~ 103 (204)
T cd03240 24 LTLIVGQNGAGKTTIIEALKYALTGELPPNSKGGAHDPKLIREGEVRAQVKLAFENANGKKYTITRSLAILENVIFCHQG 103 (204)
T ss_pred eEEEECCCCCCHHHHHHHHHHHHcCCCCcccccccchHHHHhCCCCcEEEEEEEEeCCCCEEEEEEEhhHhhceeeechH
Confidence 99999999999999999996 433 33443321211 111234566777762 22223555555332211
Q ss_pred cccccccccccccccccceeee------cCCccEEEEecceeecccccCCCCE
Q 006117 134 KAVQVPIYDFKSSSRIGYRTLE------VPSSRIVIIEGIYALSEKLRPLIDL 180 (660)
Q Consensus 134 k~I~~PiyD~s~~~rs~~~~~~------v~~a~VVIVEGilaL~deLr~llDl 180 (660)
+ +. ..++......++++... +..++.++..+.+++.||+...+|.
T Consensus 104 ~-~~-~~~~~~~~~LS~G~~~~~~la~rlala~al~~~p~illlDEP~~~LD~ 154 (204)
T cd03240 104 E-SN-WPLLDMRGRCSGGEKVLASLIIRLALAETFGSNCGILALDEPTTNLDE 154 (204)
T ss_pred H-HH-HHHhcCccccCccHHHHHHHHHHHHHHHHhccCCCEEEEcCCccccCH
Confidence 1 10 01122233333444332 4556667778888888999999986
No 458
>COG4178 ABC-type uncharacterized transport system, permease and ATPase components [General function prediction only]
Probab=97.90 E-value=7.2e-06 Score=94.09 Aligned_cols=124 Identities=14% Similarity=0.122 Sum_probs=82.3
Q ss_pred eEEEEecceeeccCCcceEEEEECCCCCcHHHHHHHHHHhCC-CceEEEecCcccccccccccCCCC-------------
Q 006117 50 FIVIRACQLLAQKNHGIILVGVAGPSGAGKTVFTEKVLNFMP-SIAVITMDNYNDSSRIIDGNFDDP------------- 115 (660)
Q Consensus 50 ~~vL~~Isl~i~~ge~~~IIGI~GpSGSGKSTLak~L~~lLp-~~g~I~lDg~~~~~~~i~~vfq~p------------- 115 (660)
...++++++.+++|+ -+-|.|+||||||||+|.|+|+-| +.|.|.+-... ..-|.+|.|
T Consensus 406 ~~ll~~l~~~v~~G~---~llI~G~SG~GKTsLlRaiaGLWP~g~G~I~~P~~~----~~lflpQ~PY~p~GtLre~l~Y 478 (604)
T COG4178 406 QTLLSELNFEVRPGE---RLLITGESGAGKTSLLRALAGLWPWGSGRISMPADS----ALLFLPQRPYLPQGTLREALCY 478 (604)
T ss_pred CeeeccceeeeCCCC---EEEEECCCCCCHHHHHHHHhccCccCCCceecCCCC----ceEEecCCCCCCCccHHHHHhC
Confidence 478999999999999 999999999999999999999986 56777664210 111222222
Q ss_pred ----CCCchhhHHHHHHhhhcCccccc-ccccccccccccceeeecCCccEEEEecceeecccccCCCCE
Q 006117 116 ----RLTDYDTLLENIRGLKEGKAVQV-PIYDFKSSSRIGYRTLEVPSSRIVIIEGIYALSEKLRPLIDL 180 (660)
Q Consensus 116 ----~l~d~~tl~e~L~~L~~Gk~I~~-PiyD~s~~~rs~~~~~~v~~a~VVIVEGilaL~deLr~llDl 180 (660)
.-++...+.+.|....-++-+.. ...+.-....++++++++.-+++++--+.+++.||-.+.+|.
T Consensus 479 P~~~~~~~d~~l~~vL~~vgL~~L~~rl~~~~~W~~vLS~GEqQRlafARilL~kP~~v~LDEATsALDe 548 (604)
T COG4178 479 PNAAPDFSDAELVAVLHKVGLGDLAERLDEEDRWDRVLSGGEQQRLAFARLLLHKPKWVFLDEATSALDE 548 (604)
T ss_pred CCCCCCCChHHHHHHHHHcCcHHHHHHHhccCcHhhhcChhHHHHHHHHHHHHcCCCEEEEecchhccCh
Confidence 22455555555543222211100 000111122345678888889999999999999998888886
No 459
>COG4170 SapD ABC-type antimicrobial peptide transport system, ATPase component [Defense mechanisms]
Probab=97.87 E-value=8.6e-05 Score=75.35 Aligned_cols=88 Identities=15% Similarity=0.278 Sum_probs=64.4
Q ss_pred eeeeccceeeeecCceEEEEecceeeccCCcceEEEEECCCCCcHHHHHHHHHHhCCCceEEEecCcccc--------c-
Q 006117 35 EIVPIEDTLSFEKGFFIVIRACQLLAQKNHGIILVGVAGPSGAGKTVFTEKVLNFMPSIAVITMDNYNDS--------S- 105 (660)
Q Consensus 35 ei~~~~~~ls~~~g~~~vL~~Isl~i~~ge~~~IIGI~GpSGSGKSTLak~L~~lLp~~g~I~lDg~~~~--------~- 105 (660)
+|..+.-.+....|...+++++++.+..|+ +-|++|.||||||-+++.|++...+.-.|.-|-+... +
T Consensus 5 DIrnL~IE~~TsqG~vK~VD~v~ltlnEGE---i~GLVGESGSGKSLiAK~Ic~v~kdnW~vTADR~Rf~~idLL~L~Pr 81 (330)
T COG4170 5 DIRNLTIEFKTSQGWVKAVDRVSMTLNEGE---IRGLVGESGSGKSLIAKAICGVNKDNWRVTADRMRFDDIDLLRLSPR 81 (330)
T ss_pred cccceEEEEecCCCceEeeeeeeeeeccce---eeeeeccCCCchhHHHHHHhcccccceEEEhhhcccccchhhcCChH
Confidence 344444555566788899999999999999 9999999999999999999999865556655554211 1
Q ss_pred -------ccccccCCCCC--CCchhhHHH
Q 006117 106 -------RIIDGNFDDPR--LTDYDTLLE 125 (660)
Q Consensus 106 -------~~i~~vfq~p~--l~d~~tl~e 125 (660)
+.+.+.||+|. +.+...+..
T Consensus 82 ~RRk~ig~~isMIFQeP~sCLDPS~~iG~ 110 (330)
T COG4170 82 ERRKLVGHNVSMIFQEPQSCLDPSERVGR 110 (330)
T ss_pred HhhhhhccchhhhhcCchhhcChHHHHHH
Confidence 34678899985 334444433
No 460
>TIGR03238 dnd_assoc_3 dnd system-associated protein 3. cereus E33L, Hahella chejuensis KCTC 2396, Pseudoalteromonas haloplanktis TAC12, and Escherichia coli B7A.
Probab=97.86 E-value=9.3e-06 Score=90.97 Aligned_cols=49 Identities=18% Similarity=0.106 Sum_probs=42.0
Q ss_pred eEEEEecceeeccCCcceEEEEECCCCCcHHHHHHHHHHhC-CCce-EEEecCccc
Q 006117 50 FIVIRACQLLAQKNHGIILVGVAGPSGAGKTVFTEKVLNFM-PSIA-VITMDNYND 103 (660)
Q Consensus 50 ~~vL~~Isl~i~~ge~~~IIGI~GpSGSGKSTLak~L~~lL-p~~g-~I~lDg~~~ 103 (660)
..+|++|++.+++|+ +++|+||||||||||++ .+.. |..| .|.+||...
T Consensus 19 ~~vL~~Vsl~i~~GE---iv~L~G~SGsGKSTLLr--~~l~~~~sGg~I~ldg~~~ 69 (504)
T TIGR03238 19 ERILVKFNKELPSSS---LLFLCGSSGDGKSEILA--ENKRKFSEGYEFFLDATHS 69 (504)
T ss_pred HHHHhCCceeecCCC---EEEEECCCCCCHHHHHh--cCCCCCCCCCEEEECCEEC
Confidence 357899999999999 99999999999999999 4444 6666 799999754
No 461
>cd03279 ABC_sbcCD SbcCD and other Mre11/Rad50 (MR) complexes are implicated in the metabolism of DNA ends. They cleave ends sealed by hairpin structures and are thought to play a role in removing protein bound to DNA termini.
Probab=97.86 E-value=8.1e-06 Score=82.14 Aligned_cols=34 Identities=24% Similarity=0.456 Sum_probs=27.3
Q ss_pred Eecceeec-cCCcceEEEEECCCCCcHHHHHHHHHHhC
Q 006117 54 RACQLLAQ-KNHGIILVGVAGPSGAGKTVFTEKVLNFM 90 (660)
Q Consensus 54 ~~Isl~i~-~ge~~~IIGI~GpSGSGKSTLak~L~~lL 90 (660)
..++|... +|+ +++|+|+|||||||++++|+..+
T Consensus 18 ~~i~~~~~~~~~---~~~i~G~NGsGKSTll~~i~~~l 52 (213)
T cd03279 18 QVIDFTGLDNNG---LFLICGPTGAGKSTILDAITYAL 52 (213)
T ss_pred eEEeCCCCCccC---EEEEECCCCCCHHHHHHHheeeE
Confidence 55566543 467 99999999999999999999654
No 462
>KOG0066 consensus eIF2-interacting protein ABC50 (ABC superfamily) [Translation, ribosomal structure and biogenesis]
Probab=97.85 E-value=1.1e-05 Score=88.64 Aligned_cols=143 Identities=15% Similarity=0.229 Sum_probs=85.0
Q ss_pred cceeeeecCceEEEEecceeeccCCcceEEEEECCCCCcHHHHHHHHHHh-C---CCceEEEecCcccc--c--------
Q 006117 40 EDTLSFEKGFFIVIRACQLLAQKNHGIILVGVAGPSGAGKTVFTEKVLNF-M---PSIAVITMDNYNDS--S-------- 105 (660)
Q Consensus 40 ~~~ls~~~g~~~vL~~Isl~i~~ge~~~IIGI~GpSGSGKSTLak~L~~l-L---p~~g~I~lDg~~~~--~-------- 105 (660)
.+.|+..-....++-+.++.+-.|. -.|++||||-|||||++.|+.. + |...++...-.-.. .
T Consensus 267 iEnF~ISA~Gk~LFvnA~L~Iv~GR---RYGLVGPNG~GKTTLLkHIa~RalaIPpnIDvLlCEQEvvad~t~Ai~tvl~ 343 (807)
T KOG0066|consen 267 IENFDISAQGKLLFVNASLTIVYGR---RYGLVGPNGMGKTTLLKHIAARALAIPPNIDVLLCEQEVVADSTSAIDTVLK 343 (807)
T ss_pred eeeeeeecccceeeeccceEEEecc---eecccCCCCCchHHHHHHHHhhhccCCCCCceEeeeeeeeecCcHHHHHHHH
Confidence 3556666666778889999999998 8999999999999999999876 3 34444333221000 0
Q ss_pred ---c---------cccccCCCCCCCchhhHHHHHHhhhc---------------CcccccccccccccccccceeeecCC
Q 006117 106 ---R---------IIDGNFDDPRLTDYDTLLENIRGLKE---------------GKAVQVPIYDFKSSSRIGYRTLEVPS 158 (660)
Q Consensus 106 ---~---------~i~~vfq~p~l~d~~tl~e~L~~L~~---------------Gk~I~~PiyD~s~~~rs~~~~~~v~~ 158 (660)
+ .+...+..-...-...+.+....|+. |-......-+..+...++++..++..
T Consensus 344 aD~kRl~lLeee~~L~~q~e~Gd~taaErl~~v~~ELraiGA~sAEarARRILAGLGFskEMQ~rPt~kFSGGWRMRvSL 423 (807)
T KOG0066|consen 344 ADKKRLALLEEEAKLMSQIEEGDTTAAERLKEVADELRAIGADSAEARARRILAGLGFSKEMQERPTTKFSGGWRMRVSL 423 (807)
T ss_pred hhHHHHHHHHHHHHHHHHHHcCchHHHHHHHHHHHHHHHhccccchhHHHHHHhhcCCChhHhcCCccccCCceeeehhH
Confidence 0 00001111111111112222222221 11111111222233456778889999
Q ss_pred ccEEEEecceeecccccCCCCE--EEEEE
Q 006117 159 SRIVIIEGIYALSEKLRPLIDL--RVSVT 185 (660)
Q Consensus 159 a~VVIVEGilaL~deLr~llDl--kIfVd 185 (660)
++.+.+|+.+++.|++.+.+|+ .||++
T Consensus 424 ARALflEPTLLMLDEPTNHLDLNAVIWLd 452 (807)
T KOG0066|consen 424 ARALFLEPTLLMLDEPTNHLDLNAVIWLD 452 (807)
T ss_pred HHHHhcCceeeeecCCccccccceeeehh
Confidence 9999999999999999999996 44443
No 463
>cd07761 CYTH-like_CthTTM-like Clostridium thermocellum (Cth)TTM and similar proteins, a subgroup of the CYTH-like superfamily. CthTTM is a metal dependent tripolyphosphatase, nucleoside triphosphatase, and nucleoside tetraphosphatase. It hydrolyzes the beta-gamma phosphoanhydride linkage of triphosphate-containing substrates including tripolyphosphate, nucleoside triphosphates and nucleoside tetraphosphates. These substrates are hydrolyzed, releasing Pi. Mg++ or Mn++ are required for the enzyme's activity. CthTTM appears to have no adenylate cyclase activity. This subgroup consists chiefly of bacterial sequences. Members of the CYTH-like (also known as triphosphate tunnel metalloenzyme (TTM)-like) superfamily have a unique active site located within an eight-stranded beta barrel.
Probab=97.83 E-value=8.1e-05 Score=71.44 Aligned_cols=89 Identities=17% Similarity=0.204 Sum_probs=70.5
Q ss_pred eeeecCCCCCcccccceEEEeecCCeEEEEEeeeecCCCceeeeeEEEEeehhhHHHHhhcCCeEEEEEEEeeeEeec-C
Q 006117 282 DIYLLPPGEDPDACQSYLRMRNRDGKYNLMFEEWVTDSPFIISPRITFEVSVRLLGGLMALGYTIATILKRSSHIFYD-D 360 (660)
Q Consensus 282 DIYl~pP~~d~~~tde~LRvR~~dg~~~Ltykg~~~d~~fi~rp~~efeV~v~~~~gL~~LGy~~aa~V~R~re~y~~-g 360 (660)
+-|+.. +.++|+|..++.+.||||++. .++|-+.+++|+......|+. +..+..|+|.|.+|.. +
T Consensus 26 q~Yl~~--------~~~vRvR~~~~~~~lT~K~~~----~~~R~E~E~~I~~~~~~~ll~--~~~~~~I~K~R~~~~~~~ 91 (146)
T cd07761 26 QGYLSI--------NPEVRIRSKGEKYILTVKSGG----GLVREEIEIEIDKKEFEHLLE--KTEGNLIEKTRYLIPLEG 91 (146)
T ss_pred EEeccC--------CcEEEEEEECCEEEEEEEcCC----CcceEEEEEeCCHHHHHHHHH--hCCCCeEEEEEEEEEeCC
Confidence 567743 479999999999999999986 356788888887554444554 7788899999999999 9
Q ss_pred cEEEEeecccccCc--ceEEEEeccH
Q 006117 361 RVCVKTDWLEQLNR--KYVQVQGRDR 384 (660)
Q Consensus 361 ~~~i~lD~ve~Lg~--~FveI~g~~~ 384 (660)
+.++++|.++|++. .|+||+-.+-
T Consensus 92 ~~~~~vD~~~g~~~gL~~~EvE~~se 117 (146)
T cd07761 92 GLLAELDVFEGRLTGLVYAEVEFPSE 117 (146)
T ss_pred CcEEEEEEEcCCCCCeEEEEEEcCCc
Confidence 99999999999864 4677765543
No 464
>PF13238 AAA_18: AAA domain; PDB: 3IIK_A 3IIJ_A 3IIL_A 1RKB_A 3IIM_A 2AXP_A 3KB2_A 1KHT_A 1NKS_A 3H86_C ....
Probab=97.83 E-value=6.3e-06 Score=74.35 Aligned_cols=22 Identities=27% Similarity=0.658 Sum_probs=20.7
Q ss_pred EEEECCCCCcHHHHHHHHHHhC
Q 006117 69 VGVAGPSGAGKTVFTEKVLNFM 90 (660)
Q Consensus 69 IGI~GpSGSGKSTLak~L~~lL 90 (660)
|+|.|++||||||+++.|...+
T Consensus 1 I~i~G~~GsGKtTia~~L~~~~ 22 (129)
T PF13238_consen 1 IGISGIPGSGKTTIAKELAERL 22 (129)
T ss_dssp EEEEESTTSSHHHHHHHHHHHH
T ss_pred CEEECCCCCCHHHHHHHHHHHH
Confidence 7899999999999999999985
No 465
>COG1245 Predicted ATPase, RNase L inhibitor (RLI) homolog [General function prediction only]
Probab=97.82 E-value=1.8e-05 Score=87.54 Aligned_cols=112 Identities=15% Similarity=0.162 Sum_probs=71.7
Q ss_pred eeccCCcceEEEEECCCCCcHHHHHHHHHHhC-CCceEEEecCcccccccccccCCCCCCCchhhHHHHHHhhhcC----
Q 006117 59 LAQKNHGIILVGVAGPSGAGKTVFTEKVLNFM-PSIAVITMDNYNDSSRIIDGNFDDPRLTDYDTLLENIRGLKEG---- 133 (660)
Q Consensus 59 ~i~~ge~~~IIGI~GpSGSGKSTLak~L~~lL-p~~g~I~lDg~~~~~~~i~~vfq~p~l~d~~tl~e~L~~L~~G---- 133 (660)
.+..|+ +||++||||-|||||++.|++.+ |+.|. ..+ ..+.|-+|.-......++.+.|......
T Consensus 363 ~i~~gE---vigilGpNgiGKTTFvk~LAG~ikPdeg~-~~~------~~vSyKPQyI~~~~~gtV~~~l~~~~~~~~~~ 432 (591)
T COG1245 363 EIYDGE---VIGILGPNGIGKTTFVKLLAGVIKPDEGS-EED------LKVSYKPQYISPDYDGTVEDLLRSAIRSAFGS 432 (591)
T ss_pred eeecce---EEEEECCCCcchHHHHHHHhccccCCCCC-Ccc------ceEeecceeecCCCCCcHHHHHHHhhhhhccc
Confidence 345566 99999999999999999999999 77665 111 1223333322222224555555432221
Q ss_pred ----ccccc-----ccccccccccccceeeecCCccEEEEecceeecccccCCCCE
Q 006117 134 ----KAVQV-----PIYDFKSSSRIGYRTLEVPSSRIVIIEGIYALSEKLRPLIDL 180 (660)
Q Consensus 134 ----k~I~~-----PiyD~s~~~rs~~~~~~v~~a~VVIVEGilaL~deLr~llDl 180 (660)
..+.. +.++......++++-++++.+..+.-|.-+-+.||+...+|.
T Consensus 433 s~~~~ei~~pl~l~~i~e~~v~~LSGGELQRvaIaa~L~reADlYllDEPSA~LDv 488 (591)
T COG1245 433 SYFKTEIVKPLNLEDLLERPVDELSGGELQRVAIAAALSREADLYLLDEPSAYLDV 488 (591)
T ss_pred chhHHhhcCccchHHHHhcccccCCchhHHHHHHHHHhccccCEEEecCchhhccH
Confidence 11222 246666667778777777777777778877778898888875
No 466
>COG0194 Gmk Guanylate kinase [Nucleotide transport and metabolism]
Probab=97.80 E-value=0.00012 Score=73.08 Aligned_cols=155 Identities=17% Similarity=0.157 Sum_probs=76.0
Q ss_pred eEEEEECCCCCcHHHHHHHHHHhCCCceEEEecCcccccc---cccccCCCCCCCchhhHHHHHHhhhcCcccccccccc
Q 006117 67 ILVGVAGPSGAGKTVFTEKVLNFMPSIAVITMDNYNDSSR---IIDGNFDDPRLTDYDTLLENIRGLKEGKAVQVPIYDF 143 (660)
Q Consensus 67 ~IIGI~GpSGSGKSTLak~L~~lLp~~g~I~lDg~~~~~~---~i~~vfq~p~l~d~~tl~e~L~~L~~Gk~I~~PiyD~ 143 (660)
.++.|.||||+||||++++|.....-.-.|+.--....+. .+.|.| .+-.+....+..++-+++..|.-
T Consensus 5 ~l~vlsgPSG~GKsTl~k~L~~~~~l~~SVS~TTR~pR~gEv~G~dY~F--------vs~~EF~~~i~~~~fLE~a~~~g 76 (191)
T COG0194 5 LLIVLSGPSGVGKSTLVKALLEDDKLRFSVSATTRKPRPGEVDGVDYFF--------VTEEEFEELIERDEFLEWAEYHG 76 (191)
T ss_pred eEEEEECCCCCCHHHHHHHHHhhcCeEEEEEeccCCCCCCCcCCceeEe--------CCHHHHHHHHhcCCcEEEEEEcC
Confidence 4999999999999999999988752112233222211111 122322 23333344444555555443322
Q ss_pred cc-cccccceeeecCCccEEE--EecceeecccccCCC-C-EEEEEEcChhHHHHHHHHHHHHHhCCCHHHHHHHHHhcc
Q 006117 144 KS-SSRIGYRTLEVPSSRIVI--IEGIYALSEKLRPLI-D-LRVSVTGGVHFDLVKRVFRDIQRVGQEPEEIIHQISETV 218 (660)
Q Consensus 144 s~-~~rs~~~~~~v~~a~VVI--VEGilaL~deLr~ll-D-lkIfVdad~dirLiRRI~RDv~eRGrs~E~Vl~qy~~~v 218 (660)
.- +.....-........-+| +|.--++ .++..+ | ..||+.+|.-..|.+|+.+ ||..-+++++.-....
T Consensus 77 nyYGT~~~~ve~~~~~G~~vildId~qGa~--qvk~~~p~~v~IFi~pPs~eeL~~RL~~----Rgtds~e~I~~Rl~~a 150 (191)
T COG0194 77 NYYGTSREPVEQALAEGKDVILDIDVQGAL--QVKKKMPNAVSIFILPPSLEELERRLKG----RGTDSEEVIARRLENA 150 (191)
T ss_pred CcccCcHHHHHHHHhcCCeEEEEEehHHHH--HHHHhCCCeEEEEEcCCCHHHHHHHHHc----cCCCCHHHHHHHHHHH
Confidence 11 111100000111222233 3322222 223223 3 5789999987777766654 5766666655544443
Q ss_pred ccchhhcccCCcCcCcEEEeCC
Q 006117 219 YPMYKAFIEPDLQTAHIKIINK 240 (660)
Q Consensus 219 ~P~~~~fIeP~k~~ADiII~N~ 240 (660)
+-....+ ..-|.+|.|+
T Consensus 151 ~~Ei~~~-----~~fdyvivNd 167 (191)
T COG0194 151 KKEISHA-----DEFDYVIVND 167 (191)
T ss_pred HHHHHHH-----HhCCEEEECc
Confidence 3332222 2358888764
No 467
>PRK13949 shikimate kinase; Provisional
Probab=97.79 E-value=1.4e-05 Score=78.10 Aligned_cols=33 Identities=24% Similarity=0.409 Sum_probs=27.6
Q ss_pred EEEEECCCCCcHHHHHHHHHHhCCCceEEEecCc
Q 006117 68 LVGVAGPSGAGKTVFTEKVLNFMPSIAVITMDNY 101 (660)
Q Consensus 68 IIGI~GpSGSGKSTLak~L~~lLp~~g~I~lDg~ 101 (660)
-|.|+|++||||||+++.|++.+ +...+..|..
T Consensus 3 ~I~liG~~GsGKstl~~~La~~l-~~~~id~D~~ 35 (169)
T PRK13949 3 RIFLVGYMGAGKTTLGKALAREL-GLSFIDLDFF 35 (169)
T ss_pred EEEEECCCCCCHHHHHHHHHHHc-CCCeecccHH
Confidence 58999999999999999999998 4556666643
No 468
>KOG0927 consensus Predicted transporter (ABC superfamily) [General function prediction only]
Probab=97.79 E-value=1.9e-05 Score=88.85 Aligned_cols=59 Identities=19% Similarity=0.345 Sum_probs=47.4
Q ss_pred cceeeeecCce-EEEEecceeeccCCcceEEEEECCCCCcHHHHHHHHHHhC-CCceEEEecCc
Q 006117 40 EDTLSFEKGFF-IVIRACQLLAQKNHGIILVGVAGPSGAGKTVFTEKVLNFM-PSIAVITMDNY 101 (660)
Q Consensus 40 ~~~ls~~~g~~-~vL~~Isl~i~~ge~~~IIGI~GpSGSGKSTLak~L~~lL-p~~g~I~lDg~ 101 (660)
..+++|.+... .+.++++|-+..+. -|+++||||+|||||++.+.+.+ |..|.++-...
T Consensus 392 ~~nv~F~y~~~~~iy~~l~fgid~~s---rvAlVGPNG~GKsTLlKl~~gdl~p~~G~vs~~~H 452 (614)
T KOG0927|consen 392 VQNVSFGYSDNPMIYKKLNFGIDLDS---RVALVGPNGAGKSTLLKLITGDLQPTIGMVSRHSH 452 (614)
T ss_pred EeccccCCCCcchhhhhhhcccCccc---ceeEecCCCCchhhhHHHHhhcccccccccccccc
Confidence 34455544322 68889999999999 89999999999999999999998 88888776543
No 469
>PRK05057 aroK shikimate kinase I; Reviewed
Probab=97.78 E-value=3.6e-05 Score=75.29 Aligned_cols=32 Identities=22% Similarity=0.418 Sum_probs=27.1
Q ss_pred EEEEECCCCCcHHHHHHHHHHhCCCceEEEecC
Q 006117 68 LVGVAGPSGAGKTVFTEKVLNFMPSIAVITMDN 100 (660)
Q Consensus 68 IIGI~GpSGSGKSTLak~L~~lLp~~g~I~lDg 100 (660)
.|.|+|++||||||+++.|++.+ +...+..|.
T Consensus 6 ~I~liG~~GaGKStl~~~La~~l-~~~~vd~D~ 37 (172)
T PRK05057 6 NIFLVGPMGAGKSTIGRQLAQQL-NMEFYDSDQ 37 (172)
T ss_pred EEEEECCCCcCHHHHHHHHHHHc-CCcEEECCc
Confidence 79999999999999999999987 444666664
No 470
>COG1129 MglA ABC-type sugar transport system, ATPase component [Carbohydrate transport and metabolism]
Probab=97.76 E-value=6.3e-05 Score=84.89 Aligned_cols=145 Identities=19% Similarity=0.188 Sum_probs=103.9
Q ss_pred EEEecceeeccCCcceEEEEECCCCCcHHHHHHHHHHhC-CCceEEEecCccccc--------ccccccCCC---CCCCc
Q 006117 52 VIRACQLLAQKNHGIILVGVAGPSGAGKTVFTEKVLNFM-PSIAVITMDNYNDSS--------RIIDGNFDD---PRLTD 119 (660)
Q Consensus 52 vL~~Isl~i~~ge~~~IIGI~GpSGSGKSTLak~L~~lL-p~~g~I~lDg~~~~~--------~~i~~vfq~---p~l~d 119 (660)
.++++||.+.+|+ |+||.|--|||+|-+++.|.+.- +..|.|.+||..... ..++|++.+ ..++.
T Consensus 274 ~~~dvSf~vr~GE---IlGiaGLvGaGRTEl~~~lfG~~~~~~G~i~l~G~~v~~~sp~~Ai~~Gi~~v~EDRk~~Gl~l 350 (500)
T COG1129 274 KVRDVSFTVRAGE---ILGIAGLVGAGRTELARALFGARPASSGEILLDGKPVRIRSPRDAIKAGIAYVPEDRKSEGLVL 350 (500)
T ss_pred ceeCceeEEeCCc---EEEEeccccCCHHHHHHHHhCCCcCCCceEEECCEEccCCCHHHHHHcCCEeCCcccccCcCcC
Confidence 4799999999999 99999999999999999999976 578999999974322 235666654 34555
Q ss_pred hhhHHHHHHh--h---h------------------cCcccccccccccccccccceeeecCCccEEEEecceeecccccC
Q 006117 120 YDTLLENIRG--L---K------------------EGKAVQVPIYDFKSSSRIGYRTLEVPSSRIVIIEGIYALSEKLRP 176 (660)
Q Consensus 120 ~~tl~e~L~~--L---~------------------~Gk~I~~PiyD~s~~~rs~~~~~~v~~a~VVIVEGilaL~deLr~ 176 (660)
...+.+|+.. + . ..-.+..|..+......+++.++++-.++-+..++.+++.|||..
T Consensus 351 ~~sI~~Ni~l~~l~~~~~~~~i~~~~e~~~~~~~~~~l~Ik~~s~~~~v~~LSGGNQQKVvlarwL~~~p~vLilDEPTR 430 (500)
T COG1129 351 DMSIAENITLASLRRFSRRGLIDRRKERALAERYIRRLRIKTPSPEQPIGTLSGGNQQKVVLARWLATDPKVLILDEPTR 430 (500)
T ss_pred CCcHHHheehHhhhhhccccccChHHHHHHHHHHHHhcCcccCCccchhhcCCchhhhhHHHHHHHhcCCCEEEECCCCc
Confidence 5556665421 1 1 111244455555556677777777888888888999999999999
Q ss_pred CCCEEEEEEcChhHHHHHHHHHHHHHhCCC
Q 006117 177 LIDLRVSVTGGVHFDLVKRVFRDIQRVGQE 206 (660)
Q Consensus 177 llDlkIfVdad~dirLiRRI~RDv~eRGrs 206 (660)
..|+- ...-+-++.|++...|.+
T Consensus 431 GIDVG-------AK~eIy~li~~lA~~G~a 453 (500)
T COG1129 431 GIDVG-------AKAEIYRLIRELAAEGKA 453 (500)
T ss_pred Ccccc-------hHHHHHHHHHHHHHCCCE
Confidence 99972 233445666666666654
No 471
>PRK03839 putative kinase; Provisional
Probab=97.70 E-value=0.0002 Score=69.81 Aligned_cols=33 Identities=15% Similarity=0.490 Sum_probs=27.8
Q ss_pred EEEEECCCCCcHHHHHHHHHHhCCCceEEEecCc
Q 006117 68 LVGVAGPSGAGKTVFTEKVLNFMPSIAVITMDNY 101 (660)
Q Consensus 68 IIGI~GpSGSGKSTLak~L~~lLp~~g~I~lDg~ 101 (660)
.|.|+|++||||||+++.|+..+ +.-.+++|..
T Consensus 2 ~I~l~G~pGsGKsT~~~~La~~~-~~~~id~d~~ 34 (180)
T PRK03839 2 IIAITGTPGVGKTTVSKLLAEKL-GYEYVDLTEF 34 (180)
T ss_pred EEEEECCCCCCHHHHHHHHHHHh-CCcEEehhhh
Confidence 58899999999999999999997 3456777765
No 472
>KOG0060 consensus Long-chain acyl-CoA transporter, ABC superfamily (involved in peroxisome organization and biogenesis) [Lipid transport and metabolism; General function prediction only]
Probab=97.67 E-value=4.4e-05 Score=86.48 Aligned_cols=151 Identities=15% Similarity=0.178 Sum_probs=92.0
Q ss_pred ceEEEEecceeeccCCcceEEEEECCCCCcHHHHHHHHHHhCC-CceEEEecCcccccccccccCCCCCCC---------
Q 006117 49 FFIVIRACQLLAQKNHGIILVGVAGPSGAGKTVFTEKVLNFMP-SIAVITMDNYNDSSRIIDGNFDDPRLT--------- 118 (660)
Q Consensus 49 ~~~vL~~Isl~i~~ge~~~IIGI~GpSGSGKSTLak~L~~lLp-~~g~I~lDg~~~~~~~i~~vfq~p~l~--------- 118 (660)
...++++++|.++.|. -+.|+||||||||+|++.|+++.| ..|.+..-.... ...+-+++|.|..-
T Consensus 447 g~~lie~Ls~~V~~g~---~LLItG~sG~GKtSLlRvlggLWp~~~G~l~k~~~~~-~~~lfflPQrPYmt~GTLRdQvI 522 (659)
T KOG0060|consen 447 GDLLIENLSLEVPSGQ---NLLITGPSGCGKTSLLRVLGGLWPSTGGKLTKPTDGG-PKDLFFLPQRPYMTLGTLRDQVI 522 (659)
T ss_pred CceeeeeeeeEecCCC---eEEEECCCCCchhHHHHHHhcccccCCCeEEecccCC-CCceEEecCCCCccccchhheee
Confidence 5578899999999999 999999999999999999999986 556655422110 01223444444221
Q ss_pred -------------chhhHHHHHHhhhcCc------ccccc-cccccccccccceeeecCCccEEEEecceeecccccCCC
Q 006117 119 -------------DYDTLLENIRGLKEGK------AVQVP-IYDFKSSSRIGYRTLEVPSSRIVIIEGIYALSEKLRPLI 178 (660)
Q Consensus 119 -------------d~~tl~e~L~~L~~Gk------~I~~P-iyD~s~~~rs~~~~~~v~~a~VVIVEGilaL~deLr~ll 178 (660)
+...+.+.|+..+-+. ....+ .+|+. ...++++.++++-++++.-.+.+++.||-...+
T Consensus 523 YP~~~~~~~~~~~~d~~i~r~Le~v~L~hl~~r~ggld~~~~~dW~-dvLS~GEqQRLa~ARLfy~kPk~AiLDE~TSAv 601 (659)
T KOG0060|consen 523 YPLKAEDMDSKSASDEDILRILENVQLGHLLEREGGLDQQVDWDWM-DVLSPGEQQRLAFARLFYHKPKFAILDECTSAV 601 (659)
T ss_pred ccCccccccccCCCHHHHHHHHHHhhhhhHHHHhCCCCchhhccHH-hhcCHHHHHHHHHHHHHhcCCceEEeechhhhc
Confidence 1112222222211111 11111 12222 234566788889999999999999998866555
Q ss_pred CEEEEEEcChhHHHHHHHHHHHHHhCCCHHHHHHHH
Q 006117 179 DLRVSVTGGVHFDLVKRVFRDIQRVGQEPEEIIHQI 214 (660)
Q Consensus 179 DlkIfVdad~dirLiRRI~RDv~eRGrs~E~Vl~qy 214 (660)
|. .....+-|-..+.|.|.-.|-|+.
T Consensus 602 ~~----------dvE~~~Yr~~r~~giT~iSVgHRk 627 (659)
T KOG0060|consen 602 TE----------DVEGALYRKCREMGITFISVGHRK 627 (659)
T ss_pred cH----------HHHHHHHHHHHHcCCeEEEeccHH
Confidence 43 234455555556687766555544
No 473
>TIGR01313 therm_gnt_kin carbohydrate kinase, thermoresistant glucokinase family. This model represents a subfamily of proteins that includes thermoresistant and thermosensitve isozymes of gluconate kinase (gluconokinase) in E. coli and other related proteins; members of this family are often named by similarity to the thermostable isozyme. These proteins show homology to shikimate kinases and adenylate kinases but not to gluconate kinases from the FGGY family of carbohydrate kinases.
Probab=97.66 E-value=0.00021 Score=68.40 Aligned_cols=32 Identities=19% Similarity=0.337 Sum_probs=26.3
Q ss_pred EEEECCCCCcHHHHHHHHHHhCCCceEEEecCc
Q 006117 69 VGVAGPSGAGKTVFTEKVLNFMPSIAVITMDNY 101 (660)
Q Consensus 69 IGI~GpSGSGKSTLak~L~~lLp~~g~I~lDg~ 101 (660)
|.|+|++||||||+++.|++.+ +...++.|++
T Consensus 1 i~l~G~~GsGKSTla~~l~~~l-~~~~v~~D~~ 32 (163)
T TIGR01313 1 FVLMGVAGSGKSTIASALAHRL-GAKFIEGDDL 32 (163)
T ss_pred CEEECCCCCCHHHHHHHHHHhc-CCeEEeCccc
Confidence 4689999999999999999998 3445666665
No 474
>PRK00131 aroK shikimate kinase; Reviewed
Probab=97.64 E-value=6.1e-05 Score=71.80 Aligned_cols=34 Identities=21% Similarity=0.202 Sum_probs=27.5
Q ss_pred ceEEEEECCCCCcHHHHHHHHHHhCCCceEEEecC
Q 006117 66 IILVGVAGPSGAGKTVFTEKVLNFMPSIAVITMDN 100 (660)
Q Consensus 66 ~~IIGI~GpSGSGKSTLak~L~~lLp~~g~I~lDg 100 (660)
+..|.|+|++||||||+++.|++.+ +...+..|.
T Consensus 4 ~~~i~l~G~~GsGKstla~~La~~l-~~~~~d~d~ 37 (175)
T PRK00131 4 GPNIVLIGFMGAGKSTIGRLLAKRL-GYDFIDTDH 37 (175)
T ss_pred CCeEEEEcCCCCCHHHHHHHHHHHh-CCCEEEChH
Confidence 3489999999999999999999998 344555554
No 475
>PRK09825 idnK D-gluconate kinase; Provisional
Probab=97.63 E-value=0.0007 Score=66.67 Aligned_cols=57 Identities=16% Similarity=0.138 Sum_probs=37.1
Q ss_pred EEEEECCCCCcHHHHHHHHHHhCCCceEEEecCccccc------ccccccCCCCCCCchhhHHHHH
Q 006117 68 LVGVAGPSGAGKTVFTEKVLNFMPSIAVITMDNYNDSS------RIIDGNFDDPRLTDYDTLLENI 127 (660)
Q Consensus 68 IIGI~GpSGSGKSTLak~L~~lLp~~g~I~lDg~~~~~------~~i~~vfq~p~l~d~~tl~e~L 127 (660)
+++|+|+|||||||+++.|++.+. . +.+|+..... ...++.+++...+++.....++
T Consensus 5 ~i~l~G~sGsGKSTl~~~la~~l~-~--~~i~gd~~~~~~~~r~~~~g~~~~~~~~~~~~~~~~~~ 67 (176)
T PRK09825 5 SYILMGVSGSGKSLIGSKIAALFS-A--KFIDGDDLHPAKNIDKMSQGIPLTDEDRLPWLERLNDA 67 (176)
T ss_pred EEEEECCCCCCHHHHHHHHHHhcC-C--EEECCcccCCHhHHHHHhcCCCCCcccchHHHHHHHHH
Confidence 899999999999999999999983 2 3445543211 1234556555555555544443
No 476
>COG2401 ABC-type ATPase fused to a predicted acetyltransferase domain [General function prediction only]
Probab=97.63 E-value=2.7e-05 Score=85.39 Aligned_cols=40 Identities=33% Similarity=0.356 Sum_probs=37.1
Q ss_pred CceEEEEecceeeccCCcceEEEEECCCCCcHHHHHHHHHHhC
Q 006117 48 GFFIVIRACQLLAQKNHGIILVGVAGPSGAGKTVFTEKVLNFM 90 (660)
Q Consensus 48 g~~~vL~~Isl~i~~ge~~~IIGI~GpSGSGKSTLak~L~~lL 90 (660)
....++++++|.+++|+ +++|+|+|||||||++++|++..
T Consensus 394 ieryvlr~vNL~ikpGd---vvaVvGqSGaGKttllRmi~G~~ 433 (593)
T COG2401 394 IERYVLRNLNLEIKPGD---VVAVVGQSGAGKTTLLRMILGAQ 433 (593)
T ss_pred eeeeeeeceeeEecCCC---eEEEEecCCCCcchHHHHHHHHh
Confidence 45579999999999999 99999999999999999999974
No 477
>PF00625 Guanylate_kin: Guanylate kinase; InterPro: IPR008144 Guanylate kinase (2.7.4.8 from EC) (GK) [] catalyzes the ATP-dependent phosphorylation of GMP into GDP. It is essential for recycling GMP and indirectly, cGMP. In prokaryotes (such as Escherichia coli), lower eukaryotes (such as yeast) and in vertebrates, GK is a highly conserved monomeric protein of about 200 amino acids. GK has been shown [, , ] to be structurally similar to protein A57R (or SalG2R) from various strains of Vaccinia virus. Proteins containing one or more copies of the DHR domain, an SH3 domain as well as a C-terminal GK-like domain, are collectively termed MAGUKs (membrane-associated guanylate kinase homologs) [], and include Drosophila lethal(1)discs large-1 tumor suppressor protein (gene dlg1); mammalian tight junction protein Zo-1; a family of mammalian synaptic proteins that seem to interact with the cytoplasmic tail of NMDA receptor subunits (SAP90/PSD-95, CHAPSYN-110/PSD-93, SAP97/DLG1 and SAP102); vertebrate 55kDa erythrocyte membrane protein (p55); Caenorhabditis elegans protein lin-2; rat protein CASK; and human proteins DLG2 and DLG3. There is an ATP-binding site (P-loop) in the N-terminal section of GK, which is not conserved in the GK-like domain of the above proteins. However these proteins retain the residues known, in GK, to be involved in the binding of GMP.; GO: 0005515 protein binding; PDB: 3UAT_A 3KFV_A 2ANC_F 2F3T_E 2ANB_A 2AN9_A 1S96_A 2F3R_B 3TR0_A 1LVG_A ....
Probab=97.62 E-value=0.00019 Score=70.45 Aligned_cols=26 Identities=27% Similarity=0.641 Sum_probs=23.6
Q ss_pred eEEEEECCCCCcHHHHHHHHHHhCCC
Q 006117 67 ILVGVAGPSGAGKTVFTEKVLNFMPS 92 (660)
Q Consensus 67 ~IIGI~GpSGSGKSTLak~L~~lLp~ 92 (660)
.+|.|+||+|||||||++.|...+|.
T Consensus 3 r~ivl~Gpsg~GK~~l~~~L~~~~~~ 28 (183)
T PF00625_consen 3 RPIVLVGPSGSGKSTLAKRLIQEFPD 28 (183)
T ss_dssp SEEEEESSTTSSHHHHHHHHHHHSTT
T ss_pred CEEEEECCCCCCHHHHHHHHHHhccc
Confidence 48899999999999999999998864
No 478
>PLN02200 adenylate kinase family protein
Probab=97.62 E-value=7.7e-05 Score=76.80 Aligned_cols=37 Identities=19% Similarity=0.302 Sum_probs=29.9
Q ss_pred CcceEEEEECCCCCcHHHHHHHHHHhCCCceEEEecCc
Q 006117 64 HGIILVGVAGPSGAGKTVFTEKVLNFMPSIAVITMDNY 101 (660)
Q Consensus 64 e~~~IIGI~GpSGSGKSTLak~L~~lLp~~g~I~lDg~ 101 (660)
..+.+|.|+|++||||||+++.|+..+ +...|+.++.
T Consensus 41 ~~~~ii~I~G~PGSGKsT~a~~La~~~-g~~his~gdl 77 (234)
T PLN02200 41 KTPFITFVLGGPGSGKGTQCEKIVETF-GFKHLSAGDL 77 (234)
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHHHh-CCeEEEccHH
Confidence 346799999999999999999999987 4556666554
No 479
>cd01130 VirB11-like_ATPase Type IV secretory pathway component VirB11, and related ATPases. The homohexamer, VirB11 is one of eleven Vir proteins, which are required for T-pilus biogenesis and virulence in the transfer of T-DNA from the Ti (tumor-inducing) plasmid of bacterial to plant cells. The pilus is a fibrous cell surface organelle, which mediates adhesion between bacteria during conjugative transfer or between bacteria and host eukaryotic cells during infection. VirB11- related ATPases include the archaeal flagella biosynthesis protein and the pilus assembly proteins CpaF/TadA and TrbB. This alignment contains the C-terminal domain, which is the ATPase.
Probab=97.61 E-value=0.0001 Score=72.70 Aligned_cols=45 Identities=24% Similarity=0.450 Sum_probs=37.9
Q ss_pred EecceeeccCCcceEEEEECCCCCcHHHHHHHHHHhC-CCceEEEecCc
Q 006117 54 RACQLLAQKNHGIILVGVAGPSGAGKTVFTEKVLNFM-PSIAVITMDNY 101 (660)
Q Consensus 54 ~~Isl~i~~ge~~~IIGI~GpSGSGKSTLak~L~~lL-p~~g~I~lDg~ 101 (660)
+-+.+.++.++ .++|+|++||||||+++.|++++ ++.+.+.+++.
T Consensus 16 ~~l~~~v~~g~---~i~I~G~tGSGKTTll~aL~~~i~~~~~~i~ied~ 61 (186)
T cd01130 16 AYLWLAVEARK---NILISGGTGSGKTTLLNALLAFIPPDERIITIEDT 61 (186)
T ss_pred HHHHHHHhCCC---EEEEECCCCCCHHHHHHHHHhhcCCCCCEEEECCc
Confidence 34455678888 99999999999999999999998 57788888764
No 480
>smart00072 GuKc Guanylate kinase homologues. Active enzymes catalyze ATP-dependent phosphorylation of GMP to GDP. Structure resembles that of adenylate kinase. So-called membrane-associated guanylate kinase homologues (MAGUKs) do not possess guanylate kinase activities; instead at least some possess protein-binding functions.
Probab=97.58 E-value=0.00051 Score=67.59 Aligned_cols=160 Identities=14% Similarity=0.123 Sum_probs=77.0
Q ss_pred eEEEEECCCCCcHHHHHHHHHHhCCC-ceEEEecCcccccccccccCCCCCCCchhhHHHHHHhhhcCcccccccccccc
Q 006117 67 ILVGVAGPSGAGKTVFTEKVLNFMPS-IAVITMDNYNDSSRIIDGNFDDPRLTDYDTLLENIRGLKEGKAVQVPIYDFKS 145 (660)
Q Consensus 67 ~IIGI~GpSGSGKSTLak~L~~lLp~-~g~I~lDg~~~~~~~i~~vfq~p~l~d~~tl~e~L~~L~~Gk~I~~PiyD~s~ 145 (660)
.+|.|+||+||||+|+++.|....|. .+.+...-.. ..+ .+-..... +.+.+-.+.-..+..|.-++.-.|.-..
T Consensus 3 r~ivl~Gpsg~GK~tl~~~L~~~~~~~~~~~~~~TtR-~~r-~~e~~g~d--y~fvs~~ef~~~i~~g~fve~~~~~g~~ 78 (184)
T smart00072 3 RPIVLSGPSGVGKGTLLAELIQEIPDAFERVVSHTTR-PPR-PGEVNGVD--YHFVSREEFEDDIKSGLFLEWGEYSGNY 78 (184)
T ss_pred cEEEEECCCCCCHHHHHHHHHhcCCcceEeeeeecCC-CCC-CCCcCCce--EEECCHHHHHHHHHcCCeEEEEEEcCcC
Confidence 48999999999999999999988752 1111111000 000 11111000 1112222222334445555444333211
Q ss_pred c-ccccceeeecCCccEEEEecceeecccccC-CCC-EEEEEEcChhHHHHHHHHHHHHHhCC-CHHHHHHHHHhccccc
Q 006117 146 S-SRIGYRTLEVPSSRIVIIEGIYALSEKLRP-LID-LRVSVTGGVHFDLVKRVFRDIQRVGQ-EPEEIIHQISETVYPM 221 (660)
Q Consensus 146 ~-~rs~~~~~~v~~a~VVIVEGilaL~deLr~-llD-lkIfVdad~dirLiRRI~RDv~eRGr-s~E~Vl~qy~~~v~P~ 221 (660)
. .....-...+...+++|+++..-....+.. ..+ +.||+.++....+.+|+.. ||. +.+.+..++... .-.
T Consensus 79 YGt~~~~i~~~~~~~~~~ild~~~~~~~~l~~~~~~~~vIfi~~~s~~~l~~rl~~----R~~~~~~~i~~rl~~a-~~~ 153 (184)
T smart00072 79 YGTSKETIRQVAEQGKHCLLDIDPQGVKQLRKAQLYPIVIFIAPPSSEELERRLRG----RGTETAERIQKRLAAA-QKE 153 (184)
T ss_pred cccCHHHHHHHHHcCCeEEEEECHHHHHHHHHhCCCcEEEEEeCcCHHHHHHHHHh----cCCCCHHHHHHHHHHH-HHH
Confidence 1 110000111234567777765443333332 233 7999997776656666553 454 455655555321 111
Q ss_pred hhhcccCCcCcCcEEEeCC
Q 006117 222 YKAFIEPDLQTAHIKIINK 240 (660)
Q Consensus 222 ~~~fIeP~k~~ADiII~N~ 240 (660)
.. . ....|.+|.|+
T Consensus 154 ~~---~--~~~fd~~I~n~ 167 (184)
T smart00072 154 AQ---E--YHLFDYVIVND 167 (184)
T ss_pred Hh---h--hccCCEEEECc
Confidence 11 1 24579999875
No 481
>cd07374 CYTH-like_Pase CYTH-like (also known as triphosphate tunnel metalloenzyme (TTM)-like) Phosphatases. CYTH-like superfamily enzymes hydrolyze triphosphate-containing substrates and require metal cations as cofactors. They have a unique active site located at the center of an eight-stranded antiparallel beta barrel tunnel (the triphosphate tunnel). The name CYTH originated from the gene designation for bacterial class IV adenylyl cyclases (CyaB), and from thiamine triphosphatase. Class IV adenylate cyclases catalyze the conversion of ATP to 3',5'-cyclic AMP (cAMP) and PPi. Thiamine triphosphatase is a soluble cytosolic enzyme which converts thiamine triphosphate to thiamine diphosphate. This domain superfamily also contains RNA triphosphatases, membrane-associated polyphosphate polymerases, tripolyphosphatases, nucleoside triphosphatases, nucleoside tetraphosphatases and other proteins with unknown functions.
Probab=97.51 E-value=0.00039 Score=67.79 Aligned_cols=100 Identities=9% Similarity=-0.021 Sum_probs=74.0
Q ss_pred ceeeeeecCCCCCcccccceEEEeecCCeEEEEEeeeecCCCceeeeeEEEEeehhhH------------HHHhhcCCeE
Q 006117 279 ETYDIYLLPPGEDPDACQSYLRMRNRDGKYNLMFEEWVTDSPFIISPRITFEVSVRLL------------GGLMALGYTI 346 (660)
Q Consensus 279 ~~~DIYl~pP~~d~~~tde~LRvR~~dg~~~Ltykg~~~d~~fi~rp~~efeV~v~~~------------~gL~~LGy~~ 346 (660)
...|+||..|........=+||.|..++.+.+|+|++... ..+++.++.|..... ..+..+|+++
T Consensus 33 ~~~~~YfDT~d~~l~~~~lrlR~r~~~~~~~~TlK~~~~~---~~r~E~e~~l~~~~~~~~~~~~~~~~~~~~~~~~l~p 109 (174)
T cd07374 33 QLRAIYFDTPDLRLARAGLRLRRRTGGADAGWHLKLPGGI---SRRTEVRAPLGDAAAVAPLLLAAALVLAVTRGLPLRP 109 (174)
T ss_pred eeeeeEecCccchhhhCCcEEEEEcCCCccEEEEEccCCC---CCceEEEeecCCccCCcccccchhheeeecCCCCceE
Confidence 4559999888774433333444445566999999998765 457888887773222 3456789999
Q ss_pred EEEEEEeeeEeecC-----cEEEEeecccc-------cCcceEEEEec
Q 006117 347 ATILKRSSHIFYDD-----RVCVKTDWLEQ-------LNRKYVQVQGR 382 (660)
Q Consensus 347 aa~V~R~re~y~~g-----~~~i~lD~ve~-------Lg~~FveI~g~ 382 (660)
.+.+.+.|..|..+ .+.|++|.++. .+ .|||++-.
T Consensus 110 ~~~~~~~R~~~~l~~~~~~~iei~lD~~~~~~~~~~~~~-~e~E~El~ 156 (174)
T cd07374 110 VATIETTRTVYRLLDAGGVLAELDLDTVTARVLDGGGTQ-YWREVEVE 156 (174)
T ss_pred EEEEEEEEEEEEecCCCceEEEEEecEEEEEEcCCCcce-EEEEEEEE
Confidence 99999999999876 59999999998 55 89999544
No 482
>COG1428 Deoxynucleoside kinases [Nucleotide transport and metabolism]
Probab=97.49 E-value=0.00015 Score=73.44 Aligned_cols=56 Identities=18% Similarity=0.242 Sum_probs=36.8
Q ss_pred CCCEEEEEEcChhHHHHHHHHHHHHHhCCCHH-HHH---HHHHhccccchhhcccCCcCcCcEEE
Q 006117 177 LIDLRVSVTGGVHFDLVKRVFRDIQRVGQEPE-EII---HQISETVYPMYKAFIEPDLQTAHIKI 237 (660)
Q Consensus 177 llDlkIfVdad~dirLiRRI~RDv~eRGrs~E-~Vl---~qy~~~v~P~~~~fIeP~k~~ADiII 237 (660)
.-|+.||++++.++ +.+| +..|||+.| ... .+|.+.....|..|++-.-..-++.|
T Consensus 126 ~PdllIyLd~~~e~-~l~R----I~~RgR~~E~~~~~~~~~Y~~~l~~~Y~~~~~~~~~~~~l~i 185 (216)
T COG1428 126 RPDLLIYLDASLET-LLRR----IAKRGRPFEIDNFDENKDYLKDLHRRYDDWFENYDACPVLGI 185 (216)
T ss_pred CCCEEEEEeCCHHH-HHHH----HHHhCCCcccccccchHHHHHHHHHHHHHHHHhcccCCeeee
Confidence 67999999999776 4444 445799887 222 24666666777777765544445555
No 483
>cd03283 ABC_MutS-like MutS-like homolog in eukaryotes. The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form slid
Probab=97.48 E-value=3.8e-05 Score=77.06 Aligned_cols=68 Identities=9% Similarity=0.114 Sum_probs=44.8
Q ss_pred EEEEecceeeccCCcceEEEEECCCCCcHHHHHHHHHHhCCCceEEEecCcccccccccccCCCCCCCchhhHHHHHHh
Q 006117 51 IVIRACQLLAQKNHGIILVGVAGPSGAGKTVFTEKVLNFMPSIAVITMDNYNDSSRIIDGNFDDPRLTDYDTLLENIRG 129 (660)
Q Consensus 51 ~vL~~Isl~i~~ge~~~IIGI~GpSGSGKSTLak~L~~lLp~~g~I~lDg~~~~~~~i~~vfq~p~l~d~~tl~e~L~~ 129 (660)
.+.+++++.. |+ +++|+||||||||||++.|++.. .+..+|.+.... .++||...+|...++.+++..
T Consensus 15 ~v~n~i~l~~--g~---~~~ltGpNg~GKSTllr~i~~~~----~l~~~G~~v~a~--~~~~q~~~l~~~~~~~d~l~~ 82 (199)
T cd03283 15 RVANDIDMEK--KN---GILITGSNMSGKSTFLRTIGVNV----ILAQAGAPVCAS--SFELPPVKIFTSIRVSDDLRD 82 (199)
T ss_pred eecceEEEcC--Cc---EEEEECCCCCChHHHHHHHHHHH----HHHHcCCEEecC--ccCcccceEEEeccchhcccc
Confidence 3667776665 56 99999999999999999998764 112233332221 245565556666677666643
No 484
>cd02021 GntK Gluconate kinase (GntK) catalyzes the phosphoryl transfer from ATP to gluconate. The resulting product gluconate-6-phoshate is an important precursor of gluconate metabolism. GntK acts as a dimmer composed of two identical subunits.
Probab=97.44 E-value=0.00065 Score=63.97 Aligned_cols=34 Identities=24% Similarity=0.401 Sum_probs=27.1
Q ss_pred EEEEECCCCCcHHHHHHHHHHhCCCceEEEecCcc
Q 006117 68 LVGVAGPSGAGKTVFTEKVLNFMPSIAVITMDNYN 102 (660)
Q Consensus 68 IIGI~GpSGSGKSTLak~L~~lLp~~g~I~lDg~~ 102 (660)
+|.|+|++||||||+++.|+..+ +...++.|.+.
T Consensus 1 li~l~G~~GsGKST~a~~l~~~~-~~~~i~~D~~~ 34 (150)
T cd02021 1 IIVVMGVSGSGKSTVGKALAERL-GAPFIDGDDLH 34 (150)
T ss_pred CEEEEcCCCCCHHHHHHHHHhhc-CCEEEeCcccc
Confidence 47899999999999999999986 44456666553
No 485
>cd01428 ADK Adenylate kinase (ADK) catalyzes the reversible phosphoryl transfer from adenosine triphosphates (ATP) to adenosine monophosphates (AMP) and to yield adenosine diphosphates (ADP). This enzyme is required for the biosynthesis of ADP and is essential for homeostasis of adenosine phosphates.
Probab=97.39 E-value=0.00044 Score=67.48 Aligned_cols=32 Identities=22% Similarity=0.430 Sum_probs=26.9
Q ss_pred EEEECCCCCcHHHHHHHHHHhCCCceEEEecCc
Q 006117 69 VGVAGPSGAGKTVFTEKVLNFMPSIAVITMDNY 101 (660)
Q Consensus 69 IGI~GpSGSGKSTLak~L~~lLp~~g~I~lDg~ 101 (660)
|.|.|++||||||+++.|+..+ +...++.|+.
T Consensus 2 I~i~G~pGsGKst~a~~La~~~-~~~~i~~~~l 33 (194)
T cd01428 2 ILLLGPPGSGKGTQAERLAKKY-GLPHISTGDL 33 (194)
T ss_pred EEEECCCCCCHHHHHHHHHHHc-CCeEEECcHH
Confidence 7899999999999999999987 4556776654
No 486
>TIGR01359 UMP_CMP_kin_fam UMP-CMP kinase family. This subfamily of the adenylate kinase superfamily contains examples of UMP-CMP kinase, as well as others proteins with unknown specificity, some currently designated adenylate kinase. All known members are eukaryotic.
Probab=97.39 E-value=0.0003 Score=68.37 Aligned_cols=33 Identities=21% Similarity=0.348 Sum_probs=27.7
Q ss_pred EEEEECCCCCcHHHHHHHHHHhCCCceEEEecCc
Q 006117 68 LVGVAGPSGAGKTVFTEKVLNFMPSIAVITMDNY 101 (660)
Q Consensus 68 IIGI~GpSGSGKSTLak~L~~lLp~~g~I~lDg~ 101 (660)
+|.|+|++||||||+++.|+..+ +...|++++.
T Consensus 1 ~i~i~G~pGsGKst~a~~la~~~-~~~~is~~d~ 33 (183)
T TIGR01359 1 VVFVLGGPGSGKGTQCAKIVENF-GFTHLSAGDL 33 (183)
T ss_pred CEEEECCCCCCHHHHHHHHHHHc-CCeEEECChH
Confidence 47899999999999999999988 4566777654
No 487
>cd07756 CYTH-like_Pase_CHAD Uncharacterized subgroup of the CYTH-like superfamily having an associated CHAD domain. This subgroup belongs to the CYTH-like (also known as triphosphate tunnel metalloenzyme (TTM)-like) superfamily. Members of this superfamily hydrolyze triphosphate-containing substrates, require metal cations as cofactors, and have a unique active site located at the center of an eight-stranded antiparallel beta barrel tunnel (the triphosphate tunnel). A number of proteins in this subgroup also contain a C-terminal CHAD (Conserved Histidine Alpha-helical Domain) domain which may participate in metal chelation or act as a phosphor-acceptor. The name CYTH originated from the gene designation for bacterial class IV adenylyl cyclases (CyaB) and from thiamine triphosphatase. Class IV adenylate cyclases catalyze the conversion of ATP to 3',5'-cyclic AMP (cAMP) and PPi. Thiamine triphosphatase is a soluble cytosolic enzyme which converts thiamine triphosphate to thiamine diphosp
Probab=97.39 E-value=0.0013 Score=66.32 Aligned_cols=117 Identities=12% Similarity=0.074 Sum_probs=84.6
Q ss_pred ccceeeeeecCCCCCcccccceEEEeecCCeEEEEEeeeecC-CCceeeeeEEEEeehhhH-----------HHHhhc--
Q 006117 277 TEETYDIYLLPPGEDPDACQSYLRMRNRDGKYNLMFEEWVTD-SPFIISPRITFEVSVRLL-----------GGLMAL-- 342 (660)
Q Consensus 277 ~~~~~DIYl~pP~~d~~~tde~LRvR~~dg~~~Ltykg~~~d-~~fi~rp~~efeV~v~~~-----------~gL~~L-- 342 (660)
.....++||..|..++...+-+||+|..++++.+|+|++... +....|++.+.+|+.... ..+.++
T Consensus 32 ~~~l~~~YfDTpd~~L~~~~~aLRiR~~~~~~~~TlK~~~~~~~g~~~R~E~e~~l~~~~~~l~~~~~~~~~~~~~~l~~ 111 (197)
T cd07756 32 TRRLHNTYFDTPDLALRRAGIALRVRREGGQWVQTLKTAGSVVGGLHQRPEWEVPLPGPAPDLDLASILPDGELLEALAA 111 (197)
T ss_pred eeeeeeeeeeCcChHHHhCCCEEEEEeeCCeEEEEEeeCCcCCCCcccceeEcccCCCCCcCcchhhcCCcccCHhhhhc
Confidence 334559999999999999999999999999999999988632 334568888888863221 234455
Q ss_pred --CCeEEEEEEEeeeEeecC----cEEEEeec--ccccC--cceEEE----EeccHHHHHHHHHH
Q 006117 343 --GYTIATILKRSSHIFYDD----RVCVKTDW--LEQLN--RKYVQV----QGRDRLYVKYVGEQ 393 (660)
Q Consensus 343 --Gy~~aa~V~R~re~y~~g----~~~i~lD~--ve~Lg--~~FveI----~g~~~~~v~~~~~~ 393 (660)
++.++..+...|+.|... .+.|++|. |..=+ ..+-|| +..+.+.+.++|.+
T Consensus 112 ~~~L~pvf~t~~~R~~~~l~~~~~~iEvalD~G~i~a~~~~~~i~EiElELk~G~~~~L~~la~~ 176 (197)
T cd07756 112 LAALVPLFTTDFERTVWLLRLGGSEIEVALDQGEIRAGDRSEPICEIELELKSGDPAALFALARR 176 (197)
T ss_pred cCCceEEEEEEEEEEEEEEcCCCcEEEEEEeeeEEEeCCCccceEeEEEEecCCCHHHHHHHHHH
Confidence 599999999999999774 49999999 44322 345555 33344455544443
No 488
>PRK00625 shikimate kinase; Provisional
Probab=97.37 E-value=0.0002 Score=70.58 Aligned_cols=33 Identities=24% Similarity=0.447 Sum_probs=28.1
Q ss_pred EEEEECCCCCcHHHHHHHHHHhCCCceEEEecCc
Q 006117 68 LVGVAGPSGAGKTVFTEKVLNFMPSIAVITMDNY 101 (660)
Q Consensus 68 IIGI~GpSGSGKSTLak~L~~lLp~~g~I~lDg~ 101 (660)
.|.|+|..||||||+++.|+..+ +...+.+|..
T Consensus 2 ~I~LiG~pGsGKTT~~k~La~~l-~~~~id~D~~ 34 (173)
T PRK00625 2 QIFLCGLPTVGKTSFGKALAKFL-SLPFFDTDDL 34 (173)
T ss_pred EEEEECCCCCCHHHHHHHHHHHh-CCCEEEhhHH
Confidence 48899999999999999999988 4557777764
No 489
>cd03276 ABC_SMC6_euk Eukaryotic SMC6 proteins; SMC proteins are large (approximately 110 to 170 kDa), and each is arranged into five recognizable domains. Amino-acid sequence homology of SMC proteins between species is largely confined to the amino- and carboxy-terminal globular domains. The amino-terminal domain contains a 'Walker A' nucleotide-binding domain (GxxGxGKS/T, in the single-letter amino-acid code), which by mutational studies has been shown to be essential in several proteins. The carboxy-terminal domain contains a sequence (the DA-box) that resembles a 'Walker B' motif, and a motif with homology to the signature sequence of the ATP-binding cassette (ABC) family of ATPases. The sequence homology within the carboxy-terminal domain is relatively high within the SMC1-SMC4 group, whereas SMC5 and SMC6 show some divergence in both of these sequences. In eukaryotic cells, the proteins are found as heterodimers of SMC1 paired with SMC3, SMC2 with SMC4, and SMC5 with SMC6 (for
Probab=97.36 E-value=0.00035 Score=69.96 Aligned_cols=119 Identities=14% Similarity=0.149 Sum_probs=61.4
Q ss_pred EEecceeeccCCcceEEEEECCCCCcHHHHHHHHHHhC-CCceEE----EecCcc---cccccccccCCCCCCCchhh--
Q 006117 53 IRACQLLAQKNHGIILVGVAGPSGAGKTVFTEKVLNFM-PSIAVI----TMDNYN---DSSRIIDGNFDDPRLTDYDT-- 122 (660)
Q Consensus 53 L~~Isl~i~~ge~~~IIGI~GpSGSGKSTLak~L~~lL-p~~g~I----~lDg~~---~~~~~i~~vfq~p~l~d~~t-- 122 (660)
++++++.+.++ +.+|+|+|||||||++..|.-.+ +..... .++.+. .....+...|++...++...
T Consensus 12 ~~~~~l~f~~g----l~~i~G~NGsGKStll~ai~~~l~~~~~~~~r~~~~~~~i~~~~~~~~i~~~~~~~~~~~~~~~~ 87 (198)
T cd03276 12 HRHLQIEFGPR----VNFIVGNNGSGKSAILTALTIGLGGKASDTNRGSSLKDLIKDGESSAKITVTLKNQGLDANPLCV 87 (198)
T ss_pred eeeeEEecCCC----eEEEECCCCCcHHHHHHHHHHHhcCCcccccccccHHHHhhCCCCeEEEEEEEEcCCccCCcCCH
Confidence 45666665543 78999999999999999998665 211100 011110 01122444555544333110
Q ss_pred H-HHHHHhhhc-CcccccccccccccccccceeeecCCccEE----EEecceeecccccCCCCE
Q 006117 123 L-LENIRGLKE-GKAVQVPIYDFKSSSRIGYRTLEVPSSRIV----IIEGIYALSEKLRPLIDL 180 (660)
Q Consensus 123 l-~e~L~~L~~-Gk~I~~PiyD~s~~~rs~~~~~~v~~a~VV----IVEGilaL~deLr~llDl 180 (660)
. .+.+..+.. ......+ .+..++++...+..+..+ +.+..+++.||+...+|.
T Consensus 88 ~~~~~~~~~l~~~~~~~~~-----~~~lS~G~k~r~~ia~al~~~~~~~p~illlDEP~~glD~ 146 (198)
T cd03276 88 LSQDMARSFLTSNKAAVRD-----VKTLSGGERSFSTVCLLLSLWEVMESPFRCLDEFDVFMDM 146 (198)
T ss_pred HHHHHHHHHhccccccCCc-----ccccChhHHHHHHHHHHHHHhcccCCCEEEecCcccccCH
Confidence 1 122322222 1112222 233334444444444444 467788888999999986
No 490
>COG0703 AroK Shikimate kinase [Amino acid transport and metabolism]
Probab=97.36 E-value=0.00013 Score=71.95 Aligned_cols=140 Identities=23% Similarity=0.334 Sum_probs=73.5
Q ss_pred EEEEECCCCCcHHHHHHHHHHhCCCceEEEecCcccc--cccccccCCCCCCCchhhHH-HHHHhhhcCccccccccccc
Q 006117 68 LVGVAGPSGAGKTVFTEKVLNFMPSIAVITMDNYNDS--SRIIDGNFDDPRLTDYDTLL-ENIRGLKEGKAVQVPIYDFK 144 (660)
Q Consensus 68 IIGI~GpSGSGKSTLak~L~~lLp~~g~I~lDg~~~~--~~~i~~vfq~p~l~d~~tl~-e~L~~L~~Gk~I~~PiyD~s 144 (660)
-|.++|..||||||+.+.|+..| +-..+..|..-.. ...+.-+|....--.+.... +.|..+..
T Consensus 4 ~IvLiG~mGaGKSTIGr~LAk~L-~~~F~D~D~~Ie~~~g~sI~eIF~~~GE~~FR~~E~~vl~~l~~------------ 70 (172)
T COG0703 4 NIVLIGFMGAGKSTIGRALAKAL-NLPFIDTDQEIEKRTGMSIAEIFEEEGEEGFRRLETEVLKELLE------------ 70 (172)
T ss_pred cEEEEcCCCCCHhHHHHHHHHHc-CCCcccchHHHHHHHCcCHHHHHHHHhHHHHHHHHHHHHHHHhh------------
Confidence 57899999999999999999998 3446666654211 11122222211100001111 11122111
Q ss_pred ccccccceeeecCCccEEEEecceeecccccCCCC---EEEEEEcChhHHHHHHHHHHHHH---hCCCHHHHHHHHHhcc
Q 006117 145 SSSRIGYRTLEVPSSRIVIIEGIYALSEKLRPLID---LRVSVTGGVHFDLVKRVFRDIQR---VGQEPEEIIHQISETV 218 (660)
Q Consensus 145 ~~~rs~~~~~~v~~a~VVIVEGilaL~deLr~llD---lkIfVdad~dirLiRRI~RDv~e---RGrs~E~Vl~qy~~~v 218 (660)
....||-.-|=..+.++-+..+. ..||++++.++ +.+|+.++-.+ ...++.+.+....+..
T Consensus 71 ------------~~~~ViaTGGG~v~~~enr~~l~~~g~vv~L~~~~e~-l~~Rl~~~~~RPll~~~~~~~~l~~L~~~R 137 (172)
T COG0703 71 ------------EDNAVIATGGGAVLSEENRNLLKKRGIVVYLDAPFET-LYERLQRDRKRPLLQTEDPREELEELLEER 137 (172)
T ss_pred ------------cCCeEEECCCccccCHHHHHHHHhCCeEEEEeCCHHH-HHHHhccccCCCcccCCChHHHHHHHHHHH
Confidence 11122333333333333333322 78999999877 66777744322 1334544455555666
Q ss_pred ccchhhcccCCcCcCcEEEeCC
Q 006117 219 YPMYKAFIEPDLQTAHIKIINK 240 (660)
Q Consensus 219 ~P~~~~fIeP~k~~ADiII~N~ 240 (660)
.|.|++ .||+++..+
T Consensus 138 ~~~Y~e-------~a~~~~~~~ 152 (172)
T COG0703 138 QPLYRE-------VADFIIDTD 152 (172)
T ss_pred HHHHHH-------hCcEEecCC
Confidence 788765 489998643
No 491
>PRK14530 adenylate kinase; Provisional
Probab=97.34 E-value=0.00032 Score=70.67 Aligned_cols=33 Identities=18% Similarity=0.282 Sum_probs=27.8
Q ss_pred EEEEECCCCCcHHHHHHHHHHhCCCceEEEecCc
Q 006117 68 LVGVAGPSGAGKTVFTEKVLNFMPSIAVITMDNY 101 (660)
Q Consensus 68 IIGI~GpSGSGKSTLak~L~~lLp~~g~I~lDg~ 101 (660)
.|.|+|++||||||+++.|+..+ +...|+.++.
T Consensus 5 ~I~i~G~pGsGKsT~~~~La~~~-~~~~i~~g~~ 37 (215)
T PRK14530 5 RILLLGAPGAGKGTQSSNLAEEF-GVEHVTTGDA 37 (215)
T ss_pred EEEEECCCCCCHHHHHHHHHHHh-CCeEEeccHH
Confidence 68999999999999999999998 4556666654
No 492
>KOG0065 consensus Pleiotropic drug resistance proteins (PDR1-15), ABC superfamily [Secondary metabolites biosynthesis, transport and catabolism]
Probab=97.33 E-value=0.00026 Score=86.74 Aligned_cols=129 Identities=15% Similarity=0.111 Sum_probs=96.2
Q ss_pred ceEEEEecceeeccCCcceEEEEECCCCCcHHHHHHHHHHhCC----CceEEEecCcccc----cccccccCCCCCCCch
Q 006117 49 FFIVIRACQLLAQKNHGIILVGVAGPSGAGKTVFTEKVLNFMP----SIAVITMDNYNDS----SRIIDGNFDDPRLTDY 120 (660)
Q Consensus 49 ~~~vL~~Isl~i~~ge~~~IIGI~GpSGSGKSTLak~L~~lLp----~~g~I~lDg~~~~----~~~i~~vfq~p~l~d~ 120 (660)
.+.++++++..+++|+ ++-+.|+.|||||||++.|++.+. ..|.|+.||+... ++.+.|+.|+...++.
T Consensus 127 ~~~il~~~sg~~~pg~---m~lvLG~pgsG~ttllkal~g~~~~~~~~~~~isy~G~~~~e~~~~~~~aY~~e~DvH~p~ 203 (1391)
T KOG0065|consen 127 KIQILKDISGIIKPGE---MTLVLGPPGSGKTTLLKALAGKLDNFLKSSGEITYNGHDLKEFVPKKTVAYNSEQDVHFPE 203 (1391)
T ss_pred cceeecCcceeEcCCc---eEEEecCCCCchHHHHHHHhCCCcccccCCCceeECCCcccccccCceEEeccccccccce
Confidence 4579999999999999 999999999999999999999872 4668999998543 2457788888888888
Q ss_pred hhHHHHHHhhhcCccc-----ccc--cc------------------ccccc-----ccccceeeecCCccEEEEecceee
Q 006117 121 DTLLENIRGLKEGKAV-----QVP--IY------------------DFKSS-----SRIGYRTLEVPSSRIVIIEGIYAL 170 (660)
Q Consensus 121 ~tl~e~L~~L~~Gk~I-----~~P--iy------------------D~s~~-----~rs~~~~~~v~~a~VVIVEGilaL 170 (660)
+|++|.|......+.. +.+ .| |-..+ ..+++++.++..+..++--+...+
T Consensus 204 lTVreTldFa~rck~~~~r~~~~~R~e~~~~~~d~~lkilGL~~~~dT~VGnd~~RGvSGGerKRvsi~E~~v~~~~~~~ 283 (1391)
T KOG0065|consen 204 LTVRETLDFAARCKGPGSRYDEVSRREKLAAMTDYLLKILGLDHCADTLVGNDMVRGVSGGERKRVSIGEMLVGPASILF 283 (1391)
T ss_pred eEEeehhhHHHhccCCccccccccHHHHHHHHHHHHHHHhCchhhccceecccccccccCcccceeeeeeeeecCcceee
Confidence 8988888654432211 011 10 11111 124567777888888888888888
Q ss_pred cccccCCCCE
Q 006117 171 SEKLRPLIDL 180 (660)
Q Consensus 171 ~deLr~llDl 180 (660)
.|+....+|-
T Consensus 284 ~De~t~GLDS 293 (1391)
T KOG0065|consen 284 WDEITRGLDS 293 (1391)
T ss_pred eecccccccH
Confidence 8999999984
No 493
>cd01673 dNK Deoxyribonucleoside kinase (dNK) catalyzes the phosphorylation of deoxyribonucleosides to yield corresponding monophosphates (dNMPs). This family consists of various deoxynucleoside kinases including deoxyribo- cytidine (EC 2.7.1.74), guanosine (EC 2.7.1.113), adenosine (EC 2.7.1.76), and thymidine (EC 2.7.1.21) kinases. They are key enzymes in the salvage of deoxyribonucleosides originating from extra- or intracellular breakdown of DNA.
Probab=97.30 E-value=0.00018 Score=70.68 Aligned_cols=60 Identities=20% Similarity=0.241 Sum_probs=39.4
Q ss_pred CCCCEEEEEEcChhHHHHHHHHHHHHHhCCCHHH-HHHHHHhccccchhhcccC-CcCcCcEEEeCC
Q 006117 176 PLIDLRVSVTGGVHFDLVKRVFRDIQRVGQEPEE-IIHQISETVYPMYKAFIEP-DLQTAHIKIINK 240 (660)
Q Consensus 176 ~llDlkIfVdad~dirLiRRI~RDv~eRGrs~E~-Vl~qy~~~v~P~~~~fIeP-~k~~ADiII~N~ 240 (660)
...|..||++++.++++.| +. .||+..+. ....|.+.+...|+.+..+ .+..+.+++.|.
T Consensus 123 ~~pd~~i~l~~~~~~~~~R-i~----~R~r~~e~~~~~~~~~~l~~~y~~~~~~~~~~~~~~~vid~ 184 (193)
T cd01673 123 LPPDLVIYLDASPETCLKR-IK----KRGRPEEQGIPLDYLEDLHEAYEKWFLPQMYEKAPVLIIDA 184 (193)
T ss_pred CCCCEEEEEeCCHHHHHHH-HH----hcCcHhhhcCCHHHHHHHHHHHHHHHhhccCCCCCEEEEEC
Confidence 4688999999999987544 32 34655442 2245777888888888875 234456666543
No 494
>cd03274 ABC_SMC4_euk Eukaryotic SMC4 proteins; SMC proteins are large (approximately 110 to 170 kDa), and each is arranged into five recognizable domains. Amino-acid sequence homology of SMC proteins between species is largely confined to the amino- and carboxy-terminal globular domains. The amino-terminal domain contains a 'Walker A' nucleotide-binding domain (GxxGxGKS/T, in the single-letter amino-acid code), which by mutational studies has been shown to be essential in several proteins. The carboxy-terminal domain contains a sequence (the DA-box) that resembles a 'Walker B' motif, and a motif with homology to the signature sequence of the ATP-binding cassette (ABC) family of ATPases. The sequence homology within the carboxy-terminal domain is relatively high within the SMC1-SMC4 group, whereas SMC5 and SMC6 show some divergence in both of these sequences. In eukaryotic cells, the proteins are found as heterodimers of SMC1 paired with SMC3, SMC2 with SMC4, and SMC5 with SMC6 (fo
Probab=97.25 E-value=0.0003 Score=71.23 Aligned_cols=37 Identities=22% Similarity=0.321 Sum_probs=30.7
Q ss_pred ecCceEEEEecceeeccCCcceEEEEECCCCCcHHHHHHHHHHhC
Q 006117 46 EKGFFIVIRACQLLAQKNHGIILVGVAGPSGAGKTVFTEKVLNFM 90 (660)
Q Consensus 46 ~~g~~~vL~~Isl~i~~ge~~~IIGI~GpSGSGKSTLak~L~~lL 90 (660)
.++...+++++++ + ++||+|||||||||++++|...+
T Consensus 13 ~~~~~~~l~~~~~-----~---i~~ivGpNGaGKSTll~~i~~~~ 49 (212)
T cd03274 13 SYAGEQVIGPFHK-----S---FSAIVGPNGSGKSNVIDSMLFVF 49 (212)
T ss_pred cCCCCeeeccCCC-----C---eEEEECCCCCCHHHHHHHHHHHh
Confidence 3456678888876 4 99999999999999999998554
No 495
>KOG0066 consensus eIF2-interacting protein ABC50 (ABC superfamily) [Translation, ribosomal structure and biogenesis]
Probab=97.23 E-value=0.00027 Score=77.96 Aligned_cols=54 Identities=15% Similarity=0.351 Sum_probs=43.5
Q ss_pred ceeeeec-CceEEEEecceeeccCCcceEEEEECCCCCcHHHHHHHHHHhC-CCceEEE
Q 006117 41 DTLSFEK-GFFIVIRACQLLAQKNHGIILVGVAGPSGAGKTVFTEKVLNFM-PSIAVIT 97 (660)
Q Consensus 41 ~~ls~~~-g~~~vL~~Isl~i~~ge~~~IIGI~GpSGSGKSTLak~L~~lL-p~~g~I~ 97 (660)
..+.|.+ |..+++..++|-+.-.. -|+|+||||.|||||++.|.+.+ |..|...
T Consensus 590 H~VtFgy~gqkpLFkkldFGiDmdS---RiaIVGPNGVGKSTlLkLL~Gkl~P~~GE~R 645 (807)
T KOG0066|consen 590 HDVTFGYPGQKPLFKKLDFGIDMDS---RIAIVGPNGVGKSTLLKLLIGKLDPNDGELR 645 (807)
T ss_pred ccccccCCCCCchhhcccccccccc---eeEEECCCCccHHHHHHHHhcCCCCCcchhh
Confidence 4455666 56678888888887777 89999999999999999999998 7655543
No 496
>PRK07196 fliI flagellum-specific ATP synthase; Validated
Probab=97.19 E-value=0.00057 Score=76.45 Aligned_cols=75 Identities=17% Similarity=0.163 Sum_probs=53.9
Q ss_pred eEEEEecceeeccCCcceEEEEECCCCCcHHHHHHHHHHhC-CCceEEEecCcc---c-------------ccccccccC
Q 006117 50 FIVIRACQLLAQKNHGIILVGVAGPSGAGKTVFTEKVLNFM-PSIAVITMDNYN---D-------------SSRIIDGNF 112 (660)
Q Consensus 50 ~~vL~~Isl~i~~ge~~~IIGI~GpSGSGKSTLak~L~~lL-p~~g~I~lDg~~---~-------------~~~~i~~vf 112 (660)
..+++++ +.+.+|+ .+||.|+||+||||++++|++.. ++.+.+-..++. . ....+.+++
T Consensus 143 i~aID~l-l~I~~GQ---~igI~G~sGaGKSTLl~~I~g~~~~dv~vig~IGerg~ev~ef~~~~l~~~gl~rsvvv~~~ 218 (434)
T PRK07196 143 VNAINGL-LTIGKGQ---RVGLMAGSGVGKSVLLGMITRYTQADVVVVGLIGERGREVKEFIEHSLQAAGMAKSVVVAAP 218 (434)
T ss_pred eeeccce-EeEecce---EEEEECCCCCCccHHHHHHhcccCCCeEEEEEEeeecHHHHHHHHHHhhhcccceEEEEEec
Confidence 4689999 9999999 99999999999999999999987 554433333321 0 012355677
Q ss_pred CCCCCCchhhHHHHHH
Q 006117 113 DDPRLTDYDTLLENIR 128 (660)
Q Consensus 113 q~p~l~d~~tl~e~L~ 128 (660)
++...+...++.+++.
T Consensus 219 ~d~s~~~rl~a~e~a~ 234 (434)
T PRK07196 219 ADESPLMRIKATELCH 234 (434)
T ss_pred CCCChhhhHHHHHHHH
Confidence 7777766666666554
No 497
>PRK12338 hypothetical protein; Provisional
Probab=97.18 E-value=0.00062 Score=73.35 Aligned_cols=27 Identities=15% Similarity=0.289 Sum_probs=24.8
Q ss_pred cceEEEEECCCCCcHHHHHHHHHHhCC
Q 006117 65 GIILVGVAGPSGAGKTVFTEKVLNFMP 91 (660)
Q Consensus 65 ~~~IIGI~GpSGSGKSTLak~L~~lLp 91 (660)
+|.+|.|.|++||||||+++.|+..++
T Consensus 3 ~p~ii~i~G~sGsGKST~a~~la~~l~ 29 (319)
T PRK12338 3 KPYVILIGSASGIGKSTIASELARTLN 29 (319)
T ss_pred CcEEEEEECCCCCCHHHHHHHHHHHCC
Confidence 467999999999999999999999983
No 498
>PRK14738 gmk guanylate kinase; Provisional
Probab=97.17 E-value=0.0026 Score=63.98 Aligned_cols=30 Identities=30% Similarity=0.443 Sum_probs=24.9
Q ss_pred ccCCcceEEEEECCCCCcHHHHHHHHHHhC
Q 006117 61 QKNHGIILVGVAGPSGAGKTVFTEKVLNFM 90 (660)
Q Consensus 61 ~~ge~~~IIGI~GpSGSGKSTLak~L~~lL 90 (660)
+...++.+|.|+||||||||||++.|....
T Consensus 8 ~~~~~~~~ivi~GpsG~GK~tl~~~L~~~~ 37 (206)
T PRK14738 8 NKPAKPLLVVISGPSGVGKDAVLARMRERK 37 (206)
T ss_pred CCCCCCeEEEEECcCCCCHHHHHHHHHhcC
Confidence 444556799999999999999999998653
No 499
>COG1703 ArgK Putative periplasmic protein kinase ArgK and related GTPases of G3E family [Amino acid transport and metabolism]
Probab=97.16 E-value=0.00027 Score=75.02 Aligned_cols=143 Identities=21% Similarity=0.289 Sum_probs=81.7
Q ss_pred ceeeccCCcceEEEEECCCCCcHHHHHHHHHHhC---C-CceEEEecCcccccccccccCCCCCCCchhhHHHHHHhhhc
Q 006117 57 QLLAQKNHGIILVGVAGPSGAGKTVFTEKVLNFM---P-SIAVITMDNYNDSSRIIDGNFDDPRLTDYDTLLENIRGLKE 132 (660)
Q Consensus 57 sl~i~~ge~~~IIGI~GpSGSGKSTLak~L~~lL---p-~~g~I~lDg~~~~~~~i~~vfq~p~l~d~~tl~e~L~~L~~ 132 (660)
+...+.-++..+|||+|+.|+|||||...|...+ . ..++|.+|--..... +-... |...+ ..+..
T Consensus 42 ~~l~p~tG~a~viGITG~PGaGKSTli~~L~~~l~~~G~rVaVlAVDPSSp~TG--GsiLG-----DRiRM----~~~~~ 110 (323)
T COG1703 42 RALYPRTGNAHVIGITGVPGAGKSTLIEALGRELRERGHRVAVLAVDPSSPFTG--GSILG-----DRIRM----QRLAV 110 (323)
T ss_pred HHHhhcCCCCcEEEecCCCCCchHHHHHHHHHHHHHCCcEEEEEEECCCCCCCC--ccccc-----cHhhH----Hhhcc
Confidence 3344555667799999999999999999998887 2 477888885322110 00000 00000 00100
Q ss_pred Cccccccccccccccc--ccc---------eeeecCCccEEEEecceeecc--cccCCCCEEEEEEcChhHHHHHHHHHH
Q 006117 133 GKAVQVPIYDFKSSSR--IGY---------RTLEVPSSRIVIIEGIYALSE--KLRPLIDLRVSVTGGVHFDLVKRVFRD 199 (660)
Q Consensus 133 Gk~I~~PiyD~s~~~r--s~~---------~~~~v~~a~VVIVEGilaL~d--eLr~llDlkIfVdad~dirLiRRI~RD 199 (660)
.. -+|=++...+ .++ ........++||+|-.=+... ++.++.|..++|.+|.
T Consensus 111 ~~----~vFiRs~~srG~lGGlS~at~~~i~~ldAaG~DvIIVETVGvGQsev~I~~~aDt~~~v~~pg----------- 175 (323)
T COG1703 111 DP----GVFIRSSPSRGTLGGLSRATREAIKLLDAAGYDVIIVETVGVGQSEVDIANMADTFLVVMIPG----------- 175 (323)
T ss_pred CC----CeEEeecCCCccchhhhHHHHHHHHHHHhcCCCEEEEEecCCCcchhHHhhhcceEEEEecCC-----------
Confidence 00 0111111110 010 122346778999998877763 6889999999999883
Q ss_pred HHHhCCCHHHHHHHHHhccccchhhcccCCcCcCcEEEeCCCCC
Q 006117 200 IQRVGQEPEEIIHQISETVYPMYKAFIEPDLQTAHIKIINKFNP 243 (660)
Q Consensus 200 v~eRGrs~E~Vl~qy~~~v~P~~~~fIeP~k~~ADiII~N~~~p 243 (660)
.|-+...+-.-+ .+.||+++.|++|.
T Consensus 176 ---~GD~~Q~iK~Gi---------------mEiaDi~vINKaD~ 201 (323)
T COG1703 176 ---AGDDLQGIKAGI---------------MEIADIIVINKADR 201 (323)
T ss_pred ---CCcHHHHHHhhh---------------hhhhheeeEeccCh
Confidence 232222222222 35789999999985
No 500
>PRK00349 uvrA excinuclease ABC subunit A; Reviewed
Probab=97.15 E-value=0.00067 Score=82.43 Aligned_cols=34 Identities=21% Similarity=0.349 Sum_probs=31.1
Q ss_pred EEEEecceeeccCCcceEEEEECCCCCcHHHHHHHHH
Q 006117 51 IVIRACQLLAQKNHGIILVGVAGPSGAGKTVFTEKVL 87 (660)
Q Consensus 51 ~vL~~Isl~i~~ge~~~IIGI~GpSGSGKSTLak~L~ 87 (660)
..|+++++.++.|+ ++||+|+||||||||++.+.
T Consensus 623 ~~L~~isl~Ip~Ge---ivgVtGvsGSGKSTLl~~~l 656 (943)
T PRK00349 623 NNLKNVDVEIPLGK---FTCVTGVSGSGKSTLINETL 656 (943)
T ss_pred CCcCceEEEEeCCC---EEEEEcCCCCCHHHHHHHHH
Confidence 35899999999999 99999999999999998763
Done!