Query 006117
Match_columns 660
No_of_seqs 510 out of 3111
Neff 5.5
Searched_HMMs 29240
Date Mon Mar 25 16:24:17 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/006117.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/006117hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3tqc_A Pantothenate kinase; bi 99.9 8E-24 2.7E-28 223.9 15.8 202 39-240 62-308 (321)
2 1sq5_A Pantothenate kinase; P- 99.9 1.1E-22 3.8E-27 212.7 11.1 191 51-242 49-298 (308)
3 3c8u_A Fructokinase; YP_612366 99.9 1.8E-21 6.1E-26 191.2 12.7 169 67-238 23-206 (208)
4 3asz_A Uridine kinase; cytidin 99.8 4.3E-21 1.5E-25 187.3 13.9 175 67-242 7-189 (211)
5 2jeo_A Uridine-cytidine kinase 99.8 8.9E-21 3E-25 190.9 13.9 191 45-240 7-215 (245)
6 3aez_A Pantothenate kinase; tr 99.8 3.1E-20 1.1E-24 195.4 15.1 179 60-241 87-300 (312)
7 1a7j_A Phosphoribulokinase; tr 99.8 2.1E-20 7.1E-25 194.6 5.7 170 65-235 4-204 (290)
8 1uj2_A Uridine-cytidine kinase 99.8 3.7E-19 1.3E-23 179.8 13.7 175 63-238 19-211 (252)
9 2ga8_A Hypothetical 39.9 kDa p 99.8 5.9E-20 2E-24 196.5 5.4 143 94-238 157-349 (359)
10 1odf_A YGR205W, hypothetical 3 99.8 5.6E-19 1.9E-23 184.1 12.6 176 63-240 28-276 (290)
11 1yem_A Hypothetical protein; s 99.8 2.5E-18 8.7E-23 167.7 15.4 144 261-413 18-174 (179)
12 2een_A Hypothetical protein PH 99.8 5.6E-18 1.9E-22 164.8 15.6 148 263-414 12-178 (183)
13 3ghx_A Adenylate cyclase CYAB; 99.8 4.4E-18 1.5E-22 165.9 14.8 141 262-409 20-177 (179)
14 3tui_C Methionine import ATP-b 99.7 1.2E-19 4.2E-24 194.9 -1.7 174 24-207 15-217 (366)
15 1rz3_A Hypothetical protein rb 99.7 2.5E-18 8.6E-23 168.1 5.4 167 65-240 21-200 (201)
16 2dc4_A PH1012 protein, 165AA l 99.7 6.8E-16 2.3E-20 147.6 15.9 140 262-409 11-163 (165)
17 3n10_A Adenylate cyclase 2; CY 99.7 6.6E-16 2.3E-20 149.7 15.6 140 263-409 21-177 (179)
18 3gfo_A Cobalt import ATP-bindi 99.6 2.8E-16 9.6E-21 162.7 7.1 140 38-180 8-176 (275)
19 3fvq_A Fe(3+) IONS import ATP- 99.6 2.7E-16 9.4E-21 168.6 7.1 139 39-180 6-171 (359)
20 3rlf_A Maltose/maltodextrin im 99.6 5.1E-16 1.8E-20 167.7 7.4 138 40-180 6-166 (381)
21 3tif_A Uncharacterized ABC tra 99.6 5.5E-16 1.9E-20 156.5 6.9 148 50-207 18-199 (235)
22 1g6h_A High-affinity branched- 99.6 1.6E-15 5.5E-20 155.0 10.4 140 38-180 8-186 (257)
23 2pcj_A ABC transporter, lipopr 99.6 6.5E-16 2.2E-20 154.8 7.0 139 39-180 6-173 (224)
24 1b0u_A Histidine permease; ABC 99.6 6.8E-16 2.3E-20 158.4 6.6 160 38-207 7-206 (262)
25 1ji0_A ABC transporter; ATP bi 99.6 1.6E-15 5.4E-20 153.5 8.5 160 38-207 7-192 (240)
26 2olj_A Amino acid ABC transpor 99.6 1.2E-15 4.1E-20 157.0 7.5 159 38-206 25-211 (263)
27 2aca_A Putative adenylate cycl 99.6 4.4E-15 1.5E-19 145.6 11.0 143 262-412 22-181 (189)
28 2yyz_A Sugar ABC transporter, 99.6 2.2E-15 7.4E-20 161.7 8.6 138 40-180 6-166 (359)
29 1v43_A Sugar-binding transport 99.6 2.9E-15 9.9E-20 161.4 7.9 139 39-180 13-174 (372)
30 1g29_1 MALK, maltose transport 99.6 3.1E-15 1.1E-19 161.2 8.0 138 40-180 6-172 (372)
31 2ihy_A ABC transporter, ATP-bi 99.6 2.6E-15 8.8E-20 155.6 7.0 140 38-180 22-194 (279)
32 1vpl_A ABC transporter, ATP-bi 99.6 2.7E-15 9.1E-20 153.7 7.0 157 40-206 18-198 (256)
33 4g1u_C Hemin import ATP-bindin 99.6 3.7E-15 1.3E-19 153.4 8.0 140 38-180 12-180 (266)
34 2it1_A 362AA long hypothetical 99.6 3E-15 1E-19 160.8 7.2 138 40-180 6-166 (362)
35 2yz2_A Putative ABC transporte 99.5 5.2E-15 1.8E-19 152.0 8.1 138 40-180 5-171 (266)
36 3d31_A Sulfate/molybdate ABC t 99.5 3E-15 1E-19 159.9 6.5 136 41-180 5-160 (348)
37 1sgw_A Putative ABC transporte 99.5 3.8E-15 1.3E-19 148.9 6.5 137 40-180 13-166 (214)
38 1oxx_K GLCV, glucose, ABC tran 99.5 2.6E-15 8.9E-20 160.7 5.7 137 41-180 7-173 (353)
39 1z47_A CYSA, putative ABC-tran 99.5 2.4E-15 8E-20 161.2 5.3 138 40-180 17-178 (355)
40 2d2e_A SUFC protein; ABC-ATPas 99.5 9.7E-15 3.3E-19 148.6 8.2 139 39-180 5-176 (250)
41 2onk_A Molybdate/tungstate ABC 99.5 2.3E-14 8E-19 145.3 8.2 154 41-207 5-180 (240)
42 2ff7_A Alpha-hemolysin translo 99.5 2.4E-14 8.1E-19 145.7 6.8 136 41-180 11-178 (247)
43 2ixe_A Antigen peptide transpo 99.5 1.3E-14 4.3E-19 149.7 4.6 137 40-180 19-189 (271)
44 3nh6_A ATP-binding cassette SU 99.5 1.5E-14 5.1E-19 152.1 5.0 170 7-180 20-223 (306)
45 2nq2_C Hypothetical ABC transp 99.5 3.8E-14 1.3E-18 144.7 6.4 133 39-180 6-161 (253)
46 1mv5_A LMRA, multidrug resista 99.4 1.9E-14 6.6E-19 145.7 2.9 136 41-180 5-172 (243)
47 2qi9_C Vitamin B12 import ATP- 99.4 5E-14 1.7E-18 143.7 4.9 152 40-206 7-185 (249)
48 2zu0_C Probable ATP-dependent 99.4 4.3E-14 1.5E-18 145.4 4.2 139 39-180 22-197 (267)
49 2qt1_A Nicotinamide riboside k 99.4 3.2E-13 1.1E-17 131.5 8.4 167 60-241 15-190 (207)
50 2pze_A Cystic fibrosis transme 99.4 1.1E-13 3.9E-18 138.9 5.3 131 40-180 9-163 (229)
51 3gd7_A Fusion complex of cysti 99.4 2.7E-14 9.1E-19 154.8 0.4 136 41-180 23-188 (390)
52 2ghi_A Transport protein; mult 99.4 1.4E-13 4.7E-18 141.1 4.1 136 41-180 21-188 (260)
53 2cbz_A Multidrug resistance-as 99.4 8.4E-14 2.9E-18 140.7 2.1 131 40-180 6-160 (237)
54 2pjz_A Hypothetical protein ST 99.4 5.6E-13 1.9E-17 137.1 6.7 134 41-180 5-161 (263)
55 3b60_A Lipid A export ATP-bind 99.3 7.3E-13 2.5E-17 149.8 7.1 137 40-180 344-513 (582)
56 3b5x_A Lipid A export ATP-bind 99.3 6.2E-13 2.1E-17 150.3 4.4 137 40-180 344-513 (582)
57 4a82_A Cystic fibrosis transme 99.3 8.7E-13 3E-17 149.1 5.2 137 40-180 342-510 (578)
58 2grj_A Dephospho-COA kinase; T 99.3 1.7E-12 5.7E-17 127.5 5.6 149 65-243 11-173 (192)
59 2f6r_A COA synthase, bifunctio 99.3 3.9E-12 1.3E-16 131.3 8.5 166 64-243 73-255 (281)
60 3qf4_B Uncharacterized ABC tra 99.3 9.7E-13 3.3E-17 149.4 2.6 137 40-180 357-524 (598)
61 2yl4_A ATP-binding cassette SU 99.3 3E-12 1E-16 145.2 6.1 136 41-180 345-516 (595)
62 3qf4_A ABC transporter, ATP-bi 99.2 1.8E-12 6.3E-17 146.8 3.9 137 40-180 344-512 (587)
63 4i1u_A Dephospho-COA kinase; s 99.2 5.7E-12 2E-16 125.9 5.7 162 65-243 8-188 (210)
64 4e22_A Cytidylate kinase; P-lo 99.2 2E-12 7E-17 131.0 1.3 81 159-240 145-227 (252)
65 2bbs_A Cystic fibrosis transme 99.2 2.6E-12 9E-17 133.9 2.1 128 41-180 44-192 (290)
66 1jjv_A Dephospho-COA kinase; P 99.2 9.7E-12 3.3E-16 120.7 5.3 161 66-243 2-179 (206)
67 1cke_A CK, MSSA, protein (cyti 99.2 1.4E-11 4.6E-16 120.8 4.5 80 159-240 123-205 (227)
68 3bhd_A Thtpase, thiamine triph 99.1 2.7E-10 9.3E-15 115.2 13.7 133 279-417 53-223 (234)
69 3g5u_A MCG1178, multidrug resi 99.1 2.1E-11 7.3E-16 149.4 5.5 136 41-180 391-559 (1284)
70 4f4c_A Multidrug resistance pr 99.1 1.1E-11 3.9E-16 152.2 0.9 136 41-180 419-587 (1321)
71 3d3q_A TRNA delta(2)-isopenten 99.1 1.1E-11 3.8E-16 132.0 0.1 153 67-228 8-163 (340)
72 3g5u_A MCG1178, multidrug resi 99.1 5.8E-11 2E-15 145.5 5.8 136 41-180 1034-1204(1284)
73 4f4c_A Multidrug resistance pr 99.1 8.7E-12 3E-16 153.2 -2.1 136 41-180 1080-1250(1321)
74 2if2_A Dephospho-COA kinase; a 99.1 7.8E-11 2.7E-15 113.9 4.5 158 67-241 2-176 (204)
75 3tr0_A Guanylate kinase, GMP k 99.0 3.5E-11 1.2E-15 115.9 1.0 160 58-240 2-171 (205)
76 1yqt_A RNAse L inhibitor; ATP- 99.0 2.1E-10 7.1E-15 129.0 6.5 150 41-207 291-455 (538)
77 1q3t_A Cytidylate kinase; nucl 99.0 3.9E-10 1.3E-14 112.4 7.4 81 158-240 134-217 (236)
78 3bk7_A ABC transporter ATP-bin 99.0 1.6E-10 5.4E-15 131.8 4.9 151 40-207 360-525 (607)
79 1vht_A Dephospho-COA kinase; s 99.0 7.5E-10 2.6E-14 108.4 8.7 161 66-243 4-181 (218)
80 3ozx_A RNAse L inhibitor; ATP 99.0 4.7E-10 1.6E-14 126.2 7.2 150 41-206 273-438 (538)
81 1z6g_A Guanylate kinase; struc 98.9 6.2E-10 2.1E-14 110.4 6.3 169 51-240 11-192 (218)
82 1yqt_A RNAse L inhibitor; ATP- 98.9 1.7E-10 5.7E-15 129.7 2.0 157 40-207 24-211 (538)
83 3r20_A Cytidylate kinase; stru 98.9 1.1E-09 3.9E-14 110.8 7.4 78 160-238 129-208 (233)
84 3bk7_A ABC transporter ATP-bin 98.9 3E-10 1E-14 129.5 1.5 156 41-207 95-281 (607)
85 1uf9_A TT1252 protein; P-loop, 98.9 3.7E-10 1.2E-14 108.3 1.8 161 64-241 6-178 (203)
86 2vp4_A Deoxynucleoside kinase; 98.9 1.4E-11 4.7E-16 122.8 -8.4 167 61-243 18-211 (230)
87 3ake_A Cytidylate kinase; CMP 98.9 6.6E-10 2.2E-14 107.0 3.3 73 160-241 119-192 (208)
88 1htw_A HI0065; nucleotide-bind 98.9 7E-11 2.4E-15 112.6 -4.2 86 40-129 10-97 (158)
89 2h92_A Cytidylate kinase; ross 98.8 8.7E-09 3E-13 100.6 9.6 80 160-241 119-201 (219)
90 2j41_A Guanylate kinase; GMP, 98.8 1.6E-09 5.6E-14 104.1 3.9 160 59-240 2-171 (207)
91 3ux8_A Excinuclease ABC, A sub 98.8 9E-10 3.1E-14 126.4 1.5 148 50-207 31-257 (670)
92 3tj7_A GBAA_1210 protein; stru 98.8 1.1E-07 3.6E-12 94.0 14.9 119 279-401 35-179 (195)
93 3j16_B RLI1P; ribosome recycli 98.7 4E-09 1.4E-13 120.3 4.5 145 50-207 360-521 (608)
94 3a00_A Guanylate kinase, GMP k 98.7 6E-09 2E-13 100.1 5.1 157 68-240 3-169 (186)
95 3lw7_A Adenylate kinase relate 98.7 4.1E-09 1.4E-13 97.3 3.4 157 67-243 2-163 (179)
96 3lnc_A Guanylate kinase, GMP k 98.7 6.1E-10 2.1E-14 110.4 -2.7 38 51-91 15-53 (231)
97 2iw3_A Elongation factor 3A; a 98.7 5.3E-09 1.8E-13 124.6 4.1 130 41-180 439-581 (986)
98 3t61_A Gluconokinase; PSI-biol 98.7 2.6E-08 8.9E-13 96.3 7.5 137 66-241 18-164 (202)
99 4eun_A Thermoresistant glucoki 98.7 1.3E-08 4.5E-13 98.6 5.1 61 60-126 26-92 (200)
100 2iw3_A Elongation factor 3A; a 98.6 2.5E-09 8.7E-14 127.3 -2.5 58 40-100 674-734 (986)
101 1s96_A Guanylate kinase, GMP k 98.6 1.3E-08 4.5E-13 101.6 1.8 162 59-240 12-182 (219)
102 3vaa_A Shikimate kinase, SK; s 98.5 7.1E-09 2.4E-13 100.5 -0.7 50 48-101 10-59 (199)
103 2gfg_A BH2851; antiparallel ba 98.5 1.7E-06 5.9E-11 84.7 15.9 125 280-409 36-186 (193)
104 3v85_A CYTH-like phosphatase; 98.5 8.2E-07 2.8E-11 87.8 13.1 124 277-400 29-195 (210)
105 3j16_B RLI1P; ribosome recycli 98.5 2.2E-08 7.4E-13 114.2 1.4 163 33-207 69-274 (608)
106 3sop_A Neuronal-specific septi 98.5 1.8E-08 6.3E-13 103.6 -0.2 110 67-179 3-127 (270)
107 1knq_A Gluconate kinase; ALFA/ 98.5 2.8E-07 9.4E-12 86.8 7.7 33 67-100 9-41 (175)
108 1tev_A UMP-CMP kinase; ploop, 98.4 7.3E-08 2.5E-12 91.2 2.8 125 66-200 3-136 (196)
109 3ux8_A Excinuclease ABC, A sub 98.4 2.8E-08 9.7E-13 114.0 -0.0 59 142-207 538-599 (670)
110 2qor_A Guanylate kinase; phosp 98.4 3.3E-07 1.1E-11 89.0 7.4 24 68-91 14-37 (204)
111 4gp7_A Metallophosphoesterase; 98.4 1.5E-08 5.2E-13 96.4 -2.3 110 55-180 1-116 (171)
112 3ozx_A RNAse L inhibitor; ATP 98.4 2.5E-08 8.6E-13 112.2 -1.0 135 60-206 22-189 (538)
113 3nwj_A ATSK2; P loop, shikimat 98.4 2.6E-08 9E-13 101.6 -1.4 53 44-100 25-81 (250)
114 1kgd_A CASK, peripheral plasma 98.4 2.4E-07 8.3E-12 88.5 4.9 24 68-91 7-30 (180)
115 2v9p_A Replication protein E1; 98.3 7.3E-08 2.5E-12 101.2 1.0 52 41-98 105-156 (305)
116 3b9q_A Chloroplast SRP recepto 98.3 2.4E-07 8E-12 96.9 4.6 74 54-130 91-179 (302)
117 1y63_A LMAJ004144AAA protein; 98.3 2.7E-06 9.4E-11 81.3 9.5 43 56-101 3-45 (184)
118 1znw_A Guanylate kinase, GMP k 98.3 1.6E-07 5.4E-12 91.6 0.8 68 50-125 9-83 (207)
119 2dpy_A FLII, flagellum-specifi 98.2 2.7E-07 9.2E-12 101.3 2.5 78 49-130 144-238 (438)
120 1qf9_A UMP/CMP kinase, protein 98.2 8.4E-07 2.9E-11 83.7 5.3 35 66-101 6-40 (194)
121 3b85_A Phosphate starvation-in 98.2 3.9E-08 1.3E-12 97.5 -4.1 116 49-177 12-134 (208)
122 1ukz_A Uridylate kinase; trans 98.2 8.9E-06 3E-10 78.2 12.5 37 64-101 13-49 (203)
123 2og2_A Putative signal recogni 98.2 6.9E-07 2.4E-11 95.8 5.0 74 54-130 148-236 (359)
124 2jaq_A Deoxyguanosine kinase; 98.2 3E-07 1E-11 87.7 1.9 61 176-241 123-185 (205)
125 2gza_A Type IV secretion syste 98.2 3.5E-07 1.2E-11 97.7 2.4 75 53-130 165-248 (361)
126 2yhs_A FTSY, cell division pro 98.2 8.2E-07 2.8E-11 98.9 5.1 75 54-131 284-372 (503)
127 3kb2_A SPBC2 prophage-derived 98.1 1.5E-06 5E-11 80.7 4.8 34 67-101 2-35 (173)
128 2bwj_A Adenylate kinase 5; pho 98.1 3.4E-07 1.2E-11 87.3 0.2 35 66-101 12-46 (199)
129 1rj9_A FTSY, signal recognitio 98.1 2.1E-06 7.3E-11 89.8 6.3 64 66-129 102-179 (304)
130 2npi_A Protein CLP1; CLP1-PCF1 98.1 5.9E-07 2E-11 99.3 1.5 122 55-181 130-276 (460)
131 3tau_A Guanylate kinase, GMP k 98.1 9.6E-07 3.3E-11 86.4 2.8 28 61-91 6-33 (208)
132 2cdn_A Adenylate kinase; phosp 98.1 9.3E-06 3.2E-10 78.2 9.0 38 63-101 17-54 (201)
133 3euj_A Chromosome partition pr 98.0 1.5E-06 5.3E-11 96.5 3.1 50 50-103 17-67 (483)
134 1ex7_A Guanylate kinase; subst 98.0 1.1E-05 3.7E-10 78.8 8.8 140 68-214 3-147 (186)
135 2qm8_A GTPase/ATPase; G protei 98.0 4E-07 1.4E-11 96.4 -2.2 76 41-119 33-120 (337)
136 2obl_A ESCN; ATPase, hydrolase 98.0 3E-06 1E-10 90.3 3.4 49 49-101 58-107 (347)
137 1zuh_A Shikimate kinase; alpha 97.9 5E-06 1.7E-10 77.7 4.2 35 66-101 7-41 (168)
138 2c95_A Adenylate kinase 1; tra 97.9 1E-05 3.5E-10 76.7 6.3 35 66-101 9-43 (196)
139 2pt7_A CAG-ALFA; ATPase, prote 97.9 1.3E-06 4.6E-11 92.2 -0.1 48 52-102 160-208 (330)
140 2vf7_A UVRA2, excinuclease ABC 97.9 1.4E-06 4.9E-11 102.6 -0.1 35 52-89 512-547 (842)
141 4aby_A DNA repair protein RECN 97.9 2E-06 7E-11 92.0 0.7 38 49-90 47-84 (415)
142 3e70_C DPA, signal recognition 97.9 8.4E-06 2.9E-10 86.3 5.1 66 65-130 128-207 (328)
143 1zp6_A Hypothetical protein AT 97.9 7.5E-06 2.6E-10 77.6 4.3 38 60-101 6-43 (191)
144 1lvg_A Guanylate kinase, GMP k 97.9 4.2E-05 1.4E-09 74.3 9.6 24 68-91 6-29 (198)
145 1tf7_A KAIC; homohexamer, hexa 97.9 1.8E-06 6.2E-11 96.3 -0.3 64 49-115 24-97 (525)
146 3szr_A Interferon-induced GTP- 97.9 4.2E-06 1.4E-10 95.3 2.8 63 68-130 47-121 (608)
147 2eyu_A Twitching motility prot 97.9 2.5E-06 8.7E-11 87.2 0.7 46 51-101 15-62 (261)
148 2qag_B Septin-6, protein NEDD5 97.8 7.5E-07 2.6E-11 97.6 -3.6 42 45-90 23-66 (427)
149 4a74_A DNA repair and recombin 97.8 5.6E-06 1.9E-10 80.3 2.7 58 59-119 21-87 (231)
150 3cm0_A Adenylate kinase; ATP-b 97.8 2.4E-05 8.2E-10 73.8 6.9 32 67-99 5-36 (186)
151 1tq4_A IIGP1, interferon-induc 97.8 1.9E-06 6.4E-11 94.1 -0.9 52 51-102 37-106 (413)
152 4eaq_A DTMP kinase, thymidylat 97.8 5.5E-05 1.9E-09 75.5 9.6 39 53-91 13-51 (229)
153 2fbl_A Hypothetical protein NE 97.8 5.4E-05 1.8E-09 72.0 9.0 94 280-385 25-122 (153)
154 2r6f_A Excinuclease ABC subuni 97.8 4.4E-06 1.5E-10 99.3 1.4 33 52-87 639-671 (972)
155 3pih_A Uvrabc system protein A 97.8 1.6E-06 5.5E-11 103.0 -2.5 58 143-207 801-861 (916)
156 3trf_A Shikimate kinase, SK; a 97.8 2.4E-06 8.2E-11 80.8 -0.9 34 67-101 6-39 (185)
157 2pt5_A Shikimate kinase, SK; a 97.8 2E-06 6.8E-11 80.0 -1.6 33 68-101 2-34 (168)
158 3uie_A Adenylyl-sulfate kinase 97.8 1.9E-06 6.6E-11 83.3 -2.0 55 44-101 6-62 (200)
159 2ygr_A Uvrabc system protein A 97.7 9.1E-06 3.1E-10 96.9 2.7 32 52-86 657-688 (993)
160 3dl0_A Adenylate kinase; phosp 97.7 6.6E-06 2.3E-10 80.0 1.1 33 68-101 2-34 (216)
161 1p9r_A General secretion pathw 97.7 7.6E-06 2.6E-10 89.4 1.4 46 51-101 157-203 (418)
162 3iij_A Coilin-interacting nucl 97.7 4.7E-05 1.6E-09 71.8 6.3 34 67-101 12-45 (180)
163 2plr_A DTMP kinase, probable t 97.7 4.4E-05 1.5E-09 73.0 6.0 26 66-91 4-29 (213)
164 1u0l_A Probable GTPase ENGC; p 97.7 1.9E-05 6.4E-10 82.0 3.6 56 60-118 166-232 (301)
165 2rhm_A Putative kinase; P-loop 97.7 3.1E-05 1.1E-09 73.2 4.8 35 66-101 5-39 (193)
166 3fdi_A Uncharacterized protein 97.7 3.8E-05 1.3E-09 75.3 5.5 24 67-90 7-30 (201)
167 2bdt_A BH3686; alpha-beta prot 97.6 2.1E-05 7.2E-10 74.8 3.1 60 68-129 4-64 (189)
168 2yv5_A YJEQ protein; hydrolase 97.6 1.6E-05 5.5E-10 82.7 2.4 50 68-118 167-227 (302)
169 3a4m_A L-seryl-tRNA(SEC) kinas 97.6 0.00013 4.4E-09 73.8 8.9 25 66-90 4-28 (260)
170 2qnr_A Septin-2, protein NEDD5 97.6 4.5E-06 1.6E-10 86.8 -2.0 49 43-101 4-54 (301)
171 2oap_1 GSPE-2, type II secreti 97.6 1.2E-05 4.1E-10 89.9 0.6 48 52-102 249-297 (511)
172 2bbw_A Adenylate kinase 4, AK4 97.5 8.9E-06 3E-10 81.2 -0.8 64 66-129 27-97 (246)
173 1ltq_A Polynucleotide kinase; 97.5 8.7E-05 3E-09 75.7 6.2 36 66-101 2-37 (301)
174 2ehv_A Hypothetical protein PH 97.5 5.2E-05 1.8E-09 74.4 4.1 39 59-100 26-67 (251)
175 3ney_A 55 kDa erythrocyte memb 97.5 0.00021 7.3E-09 70.4 8.4 24 68-91 21-44 (197)
176 3tlx_A Adenylate kinase 2; str 97.5 6.7E-05 2.3E-09 75.2 4.9 37 64-101 27-63 (243)
177 3hdt_A Putative kinase; struct 97.5 4.4E-05 1.5E-09 76.4 3.4 25 66-90 14-38 (223)
178 3fb4_A Adenylate kinase; psych 97.5 3E-05 1E-09 75.1 1.9 33 68-101 2-34 (216)
179 1t9h_A YLOQ, probable GTPase E 97.5 2.3E-05 7.8E-10 82.3 1.1 59 58-119 168-236 (307)
180 2i3b_A HCR-ntpase, human cance 97.4 2.3E-05 7.9E-10 76.4 0.4 46 68-114 3-53 (189)
181 2ocp_A DGK, deoxyguanosine kin 97.4 1.6E-05 5.4E-10 79.1 -0.8 28 66-93 2-29 (241)
182 1cr0_A DNA primase/helicase; R 97.4 3E-05 1E-09 79.3 0.7 40 52-94 24-64 (296)
183 2f1r_A Molybdopterin-guanine d 97.3 5.3E-05 1.8E-09 72.8 1.5 36 67-102 3-42 (171)
184 1aky_A Adenylate kinase; ATP:A 97.3 0.00016 5.4E-09 70.6 4.8 35 66-101 4-38 (220)
185 2ewv_A Twitching motility prot 97.3 8.5E-05 2.9E-09 79.6 2.9 38 60-100 133-172 (372)
186 2rcn_A Probable GTPase ENGC; Y 97.3 0.00012 4E-09 78.6 3.7 68 54-125 207-280 (358)
187 1kag_A SKI, shikimate kinase I 97.3 0.00014 4.9E-09 67.6 3.6 24 67-90 5-28 (173)
188 1ye8_A Protein THEP1, hypothet 97.2 0.00013 4.5E-09 70.2 3.0 23 68-90 2-24 (178)
189 1lw7_A Transcriptional regulat 97.2 0.00013 4.3E-09 77.5 2.9 38 53-93 158-198 (365)
190 2x8a_A Nuclear valosin-contain 97.1 0.00015 5.2E-09 74.2 2.8 46 51-102 34-79 (274)
191 1qhl_A Protein (cell division 97.1 2.3E-05 7.8E-10 78.9 -3.7 35 68-102 29-64 (227)
192 1zu4_A FTSY; GTPase, signal re 97.1 0.00057 1.9E-08 71.9 6.3 42 54-98 96-138 (320)
193 2w0m_A SSO2452; RECA, SSPF, un 97.0 0.00014 4.8E-09 70.1 1.3 36 52-90 11-47 (235)
194 3be4_A Adenylate kinase; malar 97.0 0.0005 1.7E-08 67.2 5.0 35 66-101 5-39 (217)
195 3ec2_A DNA replication protein 97.0 0.00029 1E-08 66.4 3.0 30 58-90 33-62 (180)
196 3jvv_A Twitching mobility prot 97.0 0.00023 7.8E-09 76.1 2.5 29 59-90 119-147 (356)
197 2pez_A Bifunctional 3'-phospho 97.0 0.00026 8.9E-09 66.7 2.6 37 66-102 5-43 (179)
198 1pzn_A RAD51, DNA repair and r 97.0 0.00019 6.6E-09 76.2 1.8 63 53-118 120-192 (349)
199 1e4v_A Adenylate kinase; trans 96.9 0.00058 2E-08 66.4 4.7 33 68-101 2-34 (214)
200 3kta_A Chromosome segregation 96.9 0.00048 1.6E-08 64.8 3.8 33 54-90 18-50 (182)
201 1n0w_A DNA repair protein RAD5 96.9 0.00078 2.7E-08 65.7 5.3 40 60-102 21-68 (243)
202 1ixz_A ATP-dependent metallopr 96.9 0.00037 1.3E-08 69.4 2.9 45 51-101 39-83 (254)
203 3thx_B DNA mismatch repair pro 96.9 0.00034 1.2E-08 83.3 2.7 38 49-89 659-696 (918)
204 1wb9_A DNA mismatch repair pro 96.9 0.00049 1.7E-08 80.9 3.9 38 49-90 594-631 (800)
205 1qhx_A CPT, protein (chloramph 96.9 0.00083 2.8E-08 62.7 4.8 35 67-101 4-39 (178)
206 2ze6_A Isopentenyl transferase 96.8 0.00075 2.6E-08 68.1 4.5 34 67-101 2-35 (253)
207 3zvl_A Bifunctional polynucleo 96.8 0.002 7E-08 69.7 8.0 34 65-99 257-290 (416)
208 1iy2_A ATP-dependent metallopr 96.8 0.0005 1.7E-08 69.7 2.9 45 51-101 63-107 (278)
209 1svm_A Large T antigen; AAA+ f 96.8 0.00032 1.1E-08 75.6 1.4 38 50-90 156-193 (377)
210 1pui_A ENGB, probable GTP-bind 96.8 0.00014 4.8E-09 69.5 -1.3 44 41-90 7-50 (210)
211 1nij_A Hypothetical protein YJ 96.8 0.00036 1.2E-08 72.9 1.6 37 66-102 4-49 (318)
212 1oix_A RAS-related protein RAB 96.7 0.0012 4.1E-08 62.8 5.0 26 65-90 28-53 (191)
213 1ly1_A Polynucleotide kinase; 96.7 0.00084 2.9E-08 62.3 3.8 35 66-101 2-37 (181)
214 1in4_A RUVB, holliday junction 96.7 0.00013 4.6E-09 76.3 -2.2 48 43-90 24-75 (334)
215 3ld9_A DTMP kinase, thymidylat 96.7 0.00032 1.1E-08 70.4 0.5 27 64-90 19-45 (223)
216 1ewq_A DNA mismatch repair pro 96.7 0.00078 2.7E-08 78.8 3.7 35 50-90 566-600 (765)
217 3thx_A DNA mismatch repair pro 96.7 0.00078 2.7E-08 80.4 3.7 36 50-88 649-684 (934)
218 2kjq_A DNAA-related protein; s 96.6 0.00064 2.2E-08 63.4 2.3 26 62-90 35-60 (149)
219 2o8b_B DNA mismatch repair pro 96.6 0.00086 3E-08 80.7 4.0 39 48-90 767-812 (1022)
220 2qag_C Septin-7; cell cycle, c 96.6 0.0005 1.7E-08 75.0 1.7 41 41-90 15-55 (418)
221 1tf7_A KAIC; homohexamer, hexa 96.6 0.0003 1E-08 78.4 -0.1 31 57-90 275-305 (525)
222 2v54_A DTMP kinase, thymidylat 96.6 0.0014 4.8E-08 62.4 4.6 34 66-99 4-37 (204)
223 1m7g_A Adenylylsulfate kinase; 96.6 0.00066 2.3E-08 65.9 1.8 35 67-101 26-63 (211)
224 2p5t_B PEZT; postsegregational 96.5 0.0012 4.1E-08 66.3 3.7 38 62-100 28-65 (253)
225 1e6c_A Shikimate kinase; phosp 96.5 0.0011 3.6E-08 61.6 2.9 34 67-101 3-36 (173)
226 2iyv_A Shikimate kinase, SK; t 96.5 0.00093 3.2E-08 62.9 2.4 33 68-101 4-36 (184)
227 2cvh_A DNA repair and recombin 96.5 0.0016 5.6E-08 62.4 4.2 38 59-100 16-53 (220)
228 2pbr_A DTMP kinase, thymidylat 96.5 0.0017 5.7E-08 61.0 4.1 32 68-99 2-35 (195)
229 1kht_A Adenylate kinase; phosp 96.5 0.0012 4.2E-08 61.8 3.1 24 67-90 4-27 (192)
230 1via_A Shikimate kinase; struc 96.5 0.0012 4E-08 61.9 2.8 33 68-101 6-38 (175)
231 3cr8_A Sulfate adenylyltranfer 96.5 0.0012 4E-08 74.6 3.3 40 60-102 366-408 (552)
232 2gks_A Bifunctional SAT/APS ki 96.4 0.0033 1.1E-07 70.8 6.7 27 64-90 370-396 (546)
233 1udx_A The GTP-binding protein 96.4 0.0011 3.9E-08 72.2 2.9 35 53-90 147-181 (416)
234 1zd8_A GTP:AMP phosphotransfer 96.4 0.0015 5.1E-08 64.0 3.4 35 66-101 7-41 (227)
235 1vma_A Cell division protein F 96.4 0.0012 4.2E-08 69.0 2.9 33 66-98 104-137 (306)
236 2z0h_A DTMP kinase, thymidylat 96.4 0.0014 4.8E-08 61.9 3.0 23 68-90 2-24 (197)
237 3gmt_A Adenylate kinase; ssgci 96.4 0.0014 4.9E-08 66.1 3.0 33 67-100 9-41 (230)
238 1nks_A Adenylate kinase; therm 96.3 0.0016 5.4E-08 61.0 3.0 24 67-90 2-25 (194)
239 2wwf_A Thymidilate kinase, put 96.3 0.0014 4.9E-08 62.7 2.7 25 66-90 10-34 (212)
240 1gvn_B Zeta; postsegregational 96.3 0.0018 6.1E-08 66.8 3.5 29 63-91 30-58 (287)
241 2vli_A Antibiotic resistance p 96.3 0.0015 5E-08 61.1 2.5 25 66-90 5-29 (183)
242 1nn5_A Similar to deoxythymidy 96.3 0.0016 5.4E-08 62.4 2.7 25 66-90 9-33 (215)
243 2f9l_A RAB11B, member RAS onco 96.2 0.0031 1.1E-07 59.9 4.5 25 66-90 5-29 (199)
244 1ls1_A Signal recognition part 96.2 0.0021 7.2E-08 66.6 3.1 43 54-101 91-134 (295)
245 1np6_A Molybdopterin-guanine d 96.2 0.0041 1.4E-07 59.8 4.8 35 66-100 6-44 (174)
246 3crm_A TRNA delta(2)-isopenten 96.2 0.0046 1.6E-07 65.4 5.6 35 67-102 6-40 (323)
247 2yvu_A Probable adenylyl-sulfa 96.1 0.0027 9.4E-08 60.0 3.5 25 66-90 13-37 (186)
248 1gtv_A TMK, thymidylate kinase 96.1 0.0012 4E-08 63.4 0.7 23 68-90 2-24 (214)
249 3exa_A TRNA delta(2)-isopenten 96.1 0.0047 1.6E-07 65.2 5.3 35 66-101 3-37 (322)
250 3qf7_A RAD50; ABC-ATPase, ATPa 96.1 0.0028 9.5E-08 67.6 3.5 34 53-90 14-47 (365)
251 4hlc_A DTMP kinase, thymidylat 96.1 0.0026 9.1E-08 62.5 3.1 24 67-90 3-26 (205)
252 1xjc_A MOBB protein homolog; s 96.0 0.0045 1.5E-07 59.5 4.4 34 66-99 4-41 (169)
253 1nlf_A Regulatory protein REPA 96.0 0.0037 1.3E-07 63.4 3.7 28 60-90 27-54 (279)
254 2axn_A 6-phosphofructo-2-kinas 95.9 0.0074 2.5E-07 67.5 6.3 37 65-101 34-74 (520)
255 1ni3_A YCHF GTPase, YCHF GTP-b 95.9 0.0061 2.1E-07 66.0 5.1 38 60-100 17-67 (392)
256 2dr3_A UPF0273 protein PH0284; 95.9 0.0056 1.9E-07 59.6 4.4 40 57-99 17-58 (247)
257 3foz_A TRNA delta(2)-isopenten 95.9 0.0069 2.4E-07 63.8 5.3 36 65-101 9-44 (316)
258 3a8t_A Adenylate isopentenyltr 95.8 0.0065 2.2E-07 64.7 5.0 35 66-101 40-74 (339)
259 3k1j_A LON protease, ATP-depen 95.8 0.002 6.7E-08 73.1 1.0 52 46-100 43-96 (604)
260 2o5v_A DNA replication and rep 95.8 0.0034 1.2E-07 67.1 2.6 35 52-90 16-50 (359)
261 2p67_A LAO/AO transport system 95.8 0.003 1E-07 66.5 2.1 40 48-90 41-80 (341)
262 1zak_A Adenylate kinase; ATP:A 95.8 0.0032 1.1E-07 61.3 2.2 34 66-100 5-38 (222)
263 1sxj_E Activator 1 40 kDa subu 95.7 0.0044 1.5E-07 64.2 3.2 40 61-101 32-73 (354)
264 2xb4_A Adenylate kinase; ATP-b 95.7 0.0047 1.6E-07 60.6 3.1 33 68-101 2-34 (223)
265 2px0_A Flagellar biosynthesis 95.7 0.0056 1.9E-07 63.6 3.7 24 67-90 106-129 (296)
266 3m6a_A ATP-dependent protease 95.7 0.0027 9.3E-08 71.2 1.4 47 51-101 97-144 (543)
267 1w1w_A Structural maintenance 95.7 0.0066 2.3E-07 65.7 4.4 29 59-90 22-50 (430)
268 1ak2_A Adenylate kinase isoenz 95.6 0.0053 1.8E-07 60.5 3.2 36 65-101 15-50 (233)
269 3umf_A Adenylate kinase; rossm 95.6 0.0056 1.9E-07 61.0 3.2 43 57-100 20-62 (217)
270 2www_A Methylmalonic aciduria 95.5 0.0066 2.2E-07 64.3 3.3 25 66-90 74-98 (349)
271 3eph_A TRNA isopentenyltransfe 95.4 0.0088 3E-07 65.1 4.2 35 66-101 2-36 (409)
272 1f2t_A RAD50 ABC-ATPase; DNA d 95.4 0.0086 2.9E-07 55.7 3.5 23 68-90 25-47 (149)
273 1sxj_C Activator 1 40 kDa subu 95.4 0.0019 6.5E-08 67.3 -1.2 42 48-90 29-70 (340)
274 3hr8_A Protein RECA; alpha and 95.4 0.01 3.4E-07 63.5 4.4 39 60-101 58-98 (356)
275 2wji_A Ferrous iron transport 95.3 0.0094 3.2E-07 54.8 3.3 24 66-89 3-26 (165)
276 3lda_A DNA repair protein RAD5 95.3 0.0098 3.3E-07 64.5 3.9 40 59-101 174-221 (400)
277 2dhr_A FTSH; AAA+ protein, hex 95.1 0.0095 3.3E-07 66.4 3.4 44 52-101 55-98 (499)
278 2wjg_A FEOB, ferrous iron tran 95.1 0.012 4.1E-07 54.7 3.5 24 66-89 7-30 (188)
279 3cf0_A Transitional endoplasmi 95.0 0.017 5.7E-07 59.4 4.7 32 68-100 51-82 (301)
280 2vf7_A UVRA2, excinuclease ABC 95.0 0.0092 3.1E-07 70.5 3.1 29 53-84 26-54 (842)
281 1p5z_B DCK, deoxycytidine kina 95.0 0.01 3.5E-07 59.5 3.0 33 64-96 22-54 (263)
282 1lv7_A FTSH; alpha/beta domain 94.9 0.017 5.8E-07 57.3 4.2 32 68-100 47-78 (257)
283 1e69_A Chromosome segregation 94.9 0.012 4E-07 61.3 3.1 32 55-90 17-48 (322)
284 1m2o_B GTP-binding protein SAR 94.9 0.012 4.1E-07 55.6 2.9 35 51-89 12-46 (190)
285 2gj8_A MNME, tRNA modification 94.8 0.014 4.7E-07 54.4 3.2 24 66-89 4-27 (172)
286 2ffh_A Protein (FFH); SRP54, s 94.8 0.015 5.1E-07 63.6 3.8 32 54-90 91-122 (425)
287 3sr0_A Adenylate kinase; phosp 94.7 0.015 5.1E-07 57.2 3.1 32 68-100 2-33 (206)
288 2ygr_A Uvrabc system protein A 94.6 0.013 4.4E-07 70.2 2.7 28 53-83 36-63 (993)
289 2r6f_A Excinuclease ABC subuni 94.6 0.013 4.4E-07 70.0 2.7 28 53-83 34-61 (972)
290 3pih_A Uvrabc system protein A 94.5 0.011 3.8E-07 70.4 2.1 28 53-83 14-41 (916)
291 3kl4_A SRP54, signal recogniti 94.5 0.026 8.8E-07 61.9 4.7 36 65-100 96-135 (433)
292 1j8m_F SRP54, signal recogniti 94.5 0.012 4.1E-07 61.1 1.9 31 56-90 92-122 (297)
293 2zr9_A Protein RECA, recombina 94.4 0.031 1.1E-06 59.3 4.8 28 60-90 58-85 (349)
294 2zej_A Dardarin, leucine-rich 94.3 0.017 5.9E-07 54.0 2.5 23 67-89 3-25 (184)
295 3qks_A DNA double-strand break 94.3 0.025 8.6E-07 55.0 3.8 23 68-90 25-47 (203)
296 3qkt_A DNA double-strand break 94.2 0.025 8.7E-07 59.2 3.8 23 68-90 25-47 (339)
297 3v9p_A DTMP kinase, thymidylat 94.2 0.017 5.7E-07 57.9 2.2 38 53-90 12-49 (227)
298 1z2a_A RAS-related protein RAB 94.2 0.032 1.1E-06 50.3 3.8 25 65-89 4-28 (168)
299 1ega_A Protein (GTP-binding pr 94.2 0.02 7E-07 59.1 2.8 23 67-89 9-31 (301)
300 1kao_A RAP2A; GTP-binding prot 94.1 0.033 1.1E-06 49.8 3.9 24 66-89 3-26 (167)
301 3lxx_A GTPase IMAP family memb 94.1 0.028 9.6E-07 55.2 3.6 27 64-90 27-53 (239)
302 2ged_A SR-beta, signal recogni 94.0 0.032 1.1E-06 52.1 3.7 27 64-90 46-72 (193)
303 2ce2_X GTPase HRAS; signaling 94.0 0.031 1.1E-06 49.8 3.5 23 67-89 4-26 (166)
304 3bc1_A RAS-related protein RAB 94.0 0.037 1.3E-06 50.9 4.1 27 63-89 8-34 (195)
305 4dsu_A GTPase KRAS, isoform 2B 94.0 0.035 1.2E-06 51.1 3.9 25 65-89 3-27 (189)
306 1u8z_A RAS-related protein RAL 94.0 0.037 1.3E-06 49.6 3.8 24 66-89 4-27 (168)
307 1m8p_A Sulfate adenylyltransfe 93.9 0.023 7.8E-07 64.3 2.8 40 62-101 392-434 (573)
308 2fn4_A P23, RAS-related protei 93.9 0.038 1.3E-06 50.3 3.9 26 64-89 7-32 (181)
309 1ypw_A Transitional endoplasmi 93.9 0.036 1.2E-06 65.0 4.6 37 60-100 235-271 (806)
310 1mky_A Probable GTP-binding pr 93.9 0.047 1.6E-06 59.2 5.2 26 65-90 179-204 (439)
311 4edh_A DTMP kinase, thymidylat 93.9 0.031 1.1E-06 55.2 3.4 25 66-90 6-30 (213)
312 1ky3_A GTP-binding protein YPT 93.9 0.04 1.4E-06 50.3 3.9 25 65-89 7-31 (182)
313 3t34_A Dynamin-related protein 93.8 0.023 8E-07 59.8 2.6 33 51-89 25-57 (360)
314 3p32_A Probable GTPase RV1496/ 93.8 0.054 1.8E-06 57.1 5.4 39 61-99 74-116 (355)
315 1c1y_A RAS-related protein RAP 93.8 0.041 1.4E-06 49.4 3.8 24 66-89 3-26 (167)
316 1wms_A RAB-9, RAB9, RAS-relate 93.8 0.041 1.4E-06 50.2 3.8 25 65-89 6-30 (177)
317 3k53_A Ferrous iron transport 93.7 0.031 1.1E-06 56.3 3.2 25 66-90 3-27 (271)
318 1z08_A RAS-related protein RAB 93.7 0.043 1.5E-06 49.6 3.9 25 65-89 5-29 (170)
319 2dyk_A GTP-binding protein; GT 93.7 0.045 1.5E-06 49.0 3.9 24 67-90 2-25 (161)
320 3con_A GTPase NRAS; structural 93.7 0.042 1.4E-06 51.1 3.8 27 63-89 18-44 (190)
321 1ek0_A Protein (GTP-binding pr 93.7 0.042 1.5E-06 49.4 3.7 24 66-89 3-26 (170)
322 3dm5_A SRP54, signal recogniti 93.7 0.049 1.7E-06 59.9 4.9 37 65-101 99-139 (443)
323 1z0j_A RAB-22, RAS-related pro 93.6 0.044 1.5E-06 49.4 3.8 26 65-90 5-30 (170)
324 2wsm_A Hydrogenase expression/ 93.6 0.039 1.3E-06 52.9 3.6 26 65-90 29-54 (221)
325 3clv_A RAB5 protein, putative; 93.6 0.052 1.8E-06 50.2 4.3 25 65-89 6-30 (208)
326 2erx_A GTP-binding protein DI- 93.6 0.042 1.4E-06 49.5 3.6 24 66-89 3-26 (172)
327 2lkc_A Translation initiation 93.6 0.039 1.3E-06 50.4 3.4 25 65-89 7-31 (178)
328 1jbk_A CLPB protein; beta barr 93.6 0.044 1.5E-06 50.1 3.7 23 68-90 45-67 (195)
329 3b9p_A CG5977-PA, isoform A; A 93.6 0.059 2E-06 54.4 5.0 32 67-99 55-86 (297)
330 3lv8_A DTMP kinase, thymidylat 93.6 0.03 1E-06 56.4 2.7 25 66-90 27-51 (236)
331 2oil_A CATX-8, RAS-related pro 93.6 0.05 1.7E-06 50.8 4.1 26 64-89 23-48 (193)
332 1f6b_A SAR1; gtpases, N-termin 93.5 0.0094 3.2E-07 56.8 -1.1 34 51-88 14-47 (198)
333 1upt_A ARL1, ADP-ribosylation 93.5 0.052 1.8E-06 49.1 3.9 25 65-89 6-30 (171)
334 2nzj_A GTP-binding protein REM 93.5 0.043 1.5E-06 49.8 3.4 24 66-89 4-27 (175)
335 1x6v_B Bifunctional 3'-phospho 93.4 0.052 1.8E-06 62.2 4.7 38 65-102 51-90 (630)
336 1njg_A DNA polymerase III subu 93.4 0.04 1.4E-06 52.1 3.2 36 55-90 34-69 (250)
337 1r2q_A RAS-related protein RAB 93.4 0.05 1.7E-06 48.9 3.7 25 65-89 5-29 (170)
338 2w58_A DNAI, primosome compone 93.4 0.046 1.6E-06 52.0 3.6 24 67-90 55-78 (202)
339 3bos_A Putative DNA replicatio 93.4 0.045 1.5E-06 52.5 3.6 24 67-90 53-76 (242)
340 2qmh_A HPR kinase/phosphorylas 93.4 0.058 2E-06 53.5 4.3 43 52-100 24-66 (205)
341 1g16_A RAS-related protein SEC 93.4 0.047 1.6E-06 49.2 3.5 24 66-89 3-26 (170)
342 2hxs_A RAB-26, RAS-related pro 93.3 0.058 2E-06 49.2 4.0 25 65-89 5-29 (178)
343 1z0f_A RAB14, member RAS oncog 93.3 0.06 2.1E-06 48.9 4.0 26 64-89 13-38 (179)
344 1dek_A Deoxynucleoside monopho 93.2 0.055 1.9E-06 54.7 3.9 24 67-90 2-25 (241)
345 2g6b_A RAS-related protein RAB 93.1 0.065 2.2E-06 49.0 4.1 26 64-89 8-33 (180)
346 1svi_A GTP-binding protein YSX 93.1 0.046 1.6E-06 50.9 3.1 26 64-89 21-46 (195)
347 2z43_A DNA repair and recombin 93.1 0.084 2.9E-06 54.9 5.3 28 60-90 104-131 (324)
348 4fcw_A Chaperone protein CLPB; 93.1 0.066 2.2E-06 54.1 4.4 24 67-90 48-71 (311)
349 2a9k_A RAS-related protein RAL 93.1 0.062 2.1E-06 49.2 3.8 24 66-89 18-41 (187)
350 3q85_A GTP-binding protein REM 93.0 0.055 1.9E-06 48.9 3.3 23 67-89 3-25 (169)
351 3t15_A Ribulose bisphosphate c 93.0 0.05 1.7E-06 55.8 3.4 27 64-90 34-60 (293)
352 2y8e_A RAB-protein 6, GH09086P 92.9 0.057 1.9E-06 49.1 3.3 24 66-89 14-37 (179)
353 2efe_B Small GTP-binding prote 92.9 0.068 2.3E-06 48.9 3.9 26 64-89 10-35 (181)
354 2gf0_A GTP-binding protein DI- 92.9 0.067 2.3E-06 49.9 3.8 26 64-89 6-31 (199)
355 1nrj_B SR-beta, signal recogni 92.9 0.063 2.2E-06 51.2 3.8 27 64-90 10-36 (218)
356 3tw8_B RAS-related protein RAB 92.9 0.064 2.2E-06 48.8 3.7 26 64-89 7-32 (181)
357 3pqc_A Probable GTP-binding pr 92.9 0.052 1.8E-06 50.2 3.0 25 65-89 22-46 (195)
358 4tmk_A Protein (thymidylate ki 92.9 0.046 1.6E-06 54.0 2.8 24 67-90 4-27 (213)
359 3kkq_A RAS-related protein M-R 92.9 0.077 2.6E-06 48.8 4.1 26 64-89 16-41 (183)
360 3tkl_A RAS-related protein RAB 92.8 0.074 2.5E-06 49.4 4.1 26 64-89 14-39 (196)
361 2hf9_A Probable hydrogenase ni 92.8 0.062 2.1E-06 51.7 3.6 26 65-90 37-62 (226)
362 1vg8_A RAS-related protein RAB 92.8 0.071 2.4E-06 50.1 3.9 27 64-90 6-32 (207)
363 2gf9_A RAS-related protein RAB 92.8 0.076 2.6E-06 49.5 4.1 26 64-89 20-45 (189)
364 3t1o_A Gliding protein MGLA; G 92.7 0.078 2.7E-06 49.0 4.0 27 64-90 12-38 (198)
365 2bov_A RAla, RAS-related prote 92.7 0.073 2.5E-06 49.9 3.8 25 65-89 13-37 (206)
366 2p65_A Hypothetical protein PF 92.7 0.056 1.9E-06 49.5 2.9 23 68-90 45-67 (187)
367 2bme_A RAB4A, RAS-related prot 92.7 0.071 2.4E-06 49.1 3.7 26 64-89 8-33 (186)
368 3auy_A DNA double-strand break 92.7 0.067 2.3E-06 56.7 4.0 33 54-90 17-49 (371)
369 2xtp_A GTPase IMAP family memb 92.6 0.061 2.1E-06 53.4 3.3 27 63-89 19-45 (260)
370 1z06_A RAS-related protein RAB 92.6 0.08 2.7E-06 49.3 3.9 25 65-89 19-43 (189)
371 3h4m_A Proteasome-activating n 92.6 0.099 3.4E-06 52.3 4.8 23 68-90 53-75 (285)
372 2a5j_A RAS-related protein RAB 92.6 0.085 2.9E-06 49.3 4.1 26 64-89 19-44 (191)
373 2qz4_A Paraplegin; AAA+, SPG7, 92.5 0.086 2.9E-06 51.8 4.3 23 68-90 41-63 (262)
374 2ohf_A Protein OLA1, GTP-bindi 92.5 0.069 2.4E-06 57.9 3.8 23 67-89 23-45 (396)
375 4ad8_A DNA repair protein RECN 92.5 0.021 7.1E-07 63.4 -0.4 36 52-91 50-85 (517)
376 1v5w_A DMC1, meiotic recombina 92.5 0.12 4E-06 54.4 5.4 27 60-89 119-145 (343)
377 3ice_A Transcription terminati 92.4 0.065 2.2E-06 58.3 3.5 33 55-90 166-198 (422)
378 1mh1_A RAC1; GTP-binding, GTPa 92.4 0.081 2.8E-06 48.5 3.7 24 66-89 5-28 (186)
379 1moz_A ARL1, ADP-ribosylation 92.4 0.054 1.9E-06 49.8 2.5 24 64-87 16-39 (183)
380 1r8s_A ADP-ribosylation factor 92.4 0.074 2.5E-06 47.8 3.3 22 68-89 2-23 (164)
381 4ag6_A VIRB4 ATPase, type IV s 92.4 0.076 2.6E-06 56.3 3.9 23 68-90 37-59 (392)
382 3ihw_A Centg3; RAS, centaurin, 92.4 0.095 3.2E-06 49.2 4.2 25 65-89 19-43 (184)
383 3t5g_A GTP-binding protein RHE 92.4 0.073 2.5E-06 48.9 3.3 25 65-89 5-29 (181)
384 3q72_A GTP-binding protein RAD 92.4 0.066 2.3E-06 48.2 2.9 23 67-89 3-25 (166)
385 2fg5_A RAB-22B, RAS-related pr 92.4 0.077 2.6E-06 49.8 3.5 26 64-89 21-46 (192)
386 3reg_A RHO-like small GTPase; 92.3 0.089 3E-06 49.2 3.8 27 63-89 20-46 (194)
387 3tmk_A Thymidylate kinase; pho 92.2 0.067 2.3E-06 53.1 3.0 26 67-92 6-31 (216)
388 2qby_A CDC6 homolog 1, cell di 92.2 0.066 2.3E-06 55.1 3.1 26 65-90 44-69 (386)
389 1fnn_A CDC6P, cell division co 92.2 0.083 2.8E-06 54.7 3.9 23 68-90 46-68 (389)
390 1fzq_A ADP-ribosylation factor 92.2 0.084 2.9E-06 49.2 3.5 26 64-89 14-39 (181)
391 2p5s_A RAS and EF-hand domain 92.1 0.095 3.3E-06 49.4 3.9 27 63-89 25-51 (199)
392 3lxw_A GTPase IMAP family memb 92.1 0.081 2.8E-06 52.8 3.5 27 64-90 19-45 (247)
393 1ksh_A ARF-like protein 2; sma 92.1 0.076 2.6E-06 49.1 3.1 26 64-89 16-41 (186)
394 1x3s_A RAS-related protein RAB 92.1 0.093 3.2E-06 48.6 3.7 24 66-89 15-38 (195)
395 1m7b_A RND3/RHOE small GTP-bin 92.1 0.086 3E-06 49.0 3.5 25 65-89 6-30 (184)
396 3bwd_D RAC-like GTP-binding pr 92.1 0.094 3.2E-06 48.0 3.6 24 66-89 8-31 (182)
397 3hjn_A DTMP kinase, thymidylat 92.0 0.073 2.5E-06 51.7 3.0 23 68-90 2-24 (197)
398 1g8f_A Sulfate adenylyltransfe 92.0 0.07 2.4E-06 59.6 3.2 28 64-91 393-420 (511)
399 2cxx_A Probable GTP-binding pr 92.0 0.065 2.2E-06 49.4 2.5 23 67-89 2-24 (190)
400 1sxj_D Activator 1 41 kDa subu 92.0 0.028 9.5E-07 57.8 -0.1 38 52-90 45-82 (353)
401 2atv_A RERG, RAS-like estrogen 92.0 0.11 3.7E-06 48.8 4.0 26 64-89 26-51 (196)
402 3b1v_A Ferrous iron uptake tra 92.0 0.082 2.8E-06 53.9 3.4 24 66-89 3-26 (272)
403 1zj6_A ADP-ribosylation factor 91.9 0.092 3.1E-06 48.8 3.4 26 64-89 14-39 (187)
404 3oes_A GTPase rhebl1; small GT 91.9 0.091 3.1E-06 49.6 3.5 25 65-89 23-47 (201)
405 3c5c_A RAS-like protein 12; GD 91.9 0.11 3.6E-06 48.8 3.9 26 64-89 19-44 (187)
406 1xwi_A SKD1 protein; VPS4B, AA 91.9 0.14 4.7E-06 53.3 5.0 34 67-100 46-79 (322)
407 2fh5_B SR-beta, signal recogni 91.9 0.094 3.2E-06 49.8 3.5 25 65-89 6-30 (214)
408 3syl_A Protein CBBX; photosynt 91.8 0.081 2.8E-06 53.5 3.2 25 66-90 67-91 (309)
409 2h17_A ADP-ribosylation factor 91.8 0.075 2.6E-06 49.2 2.7 26 64-89 19-44 (181)
410 3n70_A Transport activator; si 91.8 0.096 3.3E-06 47.7 3.3 23 68-90 26-48 (145)
411 1zd9_A ADP-ribosylation factor 91.8 0.11 3.6E-06 48.6 3.7 24 66-89 22-45 (188)
412 2j37_W Signal recognition part 91.8 0.14 4.7E-06 57.2 5.2 38 64-101 99-140 (504)
413 1ko7_A HPR kinase/phosphatase; 91.7 0.13 4.5E-06 54.1 4.7 37 49-89 131-167 (314)
414 3cph_A RAS-related protein SEC 91.7 0.11 3.9E-06 48.9 3.9 25 65-89 19-43 (213)
415 2v3c_C SRP54, signal recogniti 91.7 0.064 2.2E-06 58.6 2.3 37 65-101 98-138 (432)
416 2bcg_Y Protein YP2, GTP-bindin 91.7 0.11 3.8E-06 49.0 3.7 26 64-89 6-31 (206)
417 2qtf_A Protein HFLX, GTP-bindi 91.6 0.078 2.7E-06 56.5 2.8 24 67-90 180-203 (364)
418 1c9k_A COBU, adenosylcobinamid 91.6 0.076 2.6E-06 51.5 2.5 22 68-89 1-22 (180)
419 2iwr_A Centaurin gamma 1; ANK 91.6 0.094 3.2E-06 48.0 3.1 25 65-89 6-30 (178)
420 2chg_A Replication factor C sm 91.6 0.1 3.5E-06 48.8 3.3 23 68-90 40-62 (226)
421 2r6a_A DNAB helicase, replicat 91.6 0.068 2.3E-06 58.2 2.4 36 52-90 192-227 (454)
422 2ew1_A RAS-related protein RAB 91.5 0.11 3.8E-06 49.7 3.7 26 64-89 24-49 (201)
423 1yrb_A ATP(GTP)binding protein 91.5 0.11 3.9E-06 51.1 3.7 39 61-99 9-50 (262)
424 4bas_A ADP-ribosylation factor 91.5 0.11 3.9E-06 48.2 3.6 27 63-89 14-40 (199)
425 1zbd_A Rabphilin-3A; G protein 91.5 0.11 3.7E-06 48.9 3.4 24 66-89 8-31 (203)
426 3hws_A ATP-dependent CLP prote 91.4 0.14 4.8E-06 53.6 4.5 24 67-90 52-75 (363)
427 1l8q_A Chromosomal replication 91.4 0.1 3.5E-06 53.6 3.3 24 67-90 38-61 (324)
428 3tqf_A HPR(Ser) kinase; transf 91.3 0.13 4.5E-06 50.0 3.8 34 52-89 6-39 (181)
429 2qu8_A Putative nucleolar GTP- 91.3 0.1 3.4E-06 50.6 3.1 26 64-89 27-52 (228)
430 3dz8_A RAS-related protein RAB 91.3 0.12 4E-06 48.4 3.4 26 65-90 22-47 (191)
431 3i8s_A Ferrous iron transport 91.3 0.11 3.6E-06 52.8 3.3 24 66-89 3-26 (274)
432 2o52_A RAS-related protein RAB 91.2 0.1 3.5E-06 49.4 3.0 26 64-89 23-48 (200)
433 3llm_A ATP-dependent RNA helic 91.2 0.1 3.6E-06 51.2 3.2 26 60-88 73-98 (235)
434 2il1_A RAB12; G-protein, GDP, 91.2 0.13 4.5E-06 48.2 3.7 26 64-89 24-49 (192)
435 4dhe_A Probable GTP-binding pr 91.2 0.059 2E-06 51.5 1.2 25 65-89 28-52 (223)
436 2f7s_A C25KG, RAS-related prot 91.1 0.13 4.4E-06 49.0 3.6 26 64-89 23-48 (217)
437 2e87_A Hypothetical protein PH 91.1 0.082 2.8E-06 55.6 2.4 26 65-90 166-191 (357)
438 1d2n_A N-ethylmaleimide-sensit 91.1 0.15 5.1E-06 51.0 4.2 27 64-90 62-88 (272)
439 3iev_A GTP-binding protein ERA 91.1 0.12 4.2E-06 53.3 3.6 26 64-89 8-33 (308)
440 2j1l_A RHO-related GTP-binding 91.1 0.11 3.8E-06 49.8 3.1 26 64-89 32-57 (214)
441 2cjw_A GTP-binding protein GEM 91.1 0.15 5.1E-06 48.2 4.0 24 66-89 6-29 (192)
442 2zts_A Putative uncharacterize 91.1 0.14 4.9E-06 49.5 3.9 26 60-88 27-52 (251)
443 3cbq_A GTP-binding protein REM 91.1 0.11 3.7E-06 49.3 3.0 26 63-88 20-45 (195)
444 2fv8_A H6, RHO-related GTP-bin 91.0 0.13 4.3E-06 49.0 3.4 24 66-89 25-48 (207)
445 1e2k_A Thymidine kinase; trans 91.0 0.11 3.8E-06 54.9 3.3 31 66-96 4-34 (331)
446 1gwn_A RHO-related GTP-binding 91.0 0.13 4.4E-06 49.3 3.5 26 64-89 26-51 (205)
447 3a1s_A Iron(II) transport prot 90.9 0.13 4.3E-06 51.9 3.4 24 66-89 5-28 (258)
448 2q3h_A RAS homolog gene family 90.9 0.13 4.5E-06 48.2 3.3 25 65-89 19-43 (201)
449 2fu5_C RAS-related protein RAB 90.9 0.096 3.3E-06 48.2 2.4 25 65-89 7-31 (183)
450 1p6x_A Thymidine kinase; P-loo 90.9 0.11 3.9E-06 54.9 3.2 26 66-91 7-32 (334)
451 1of1_A Thymidine kinase; trans 90.9 0.14 4.8E-06 55.1 4.0 33 65-97 48-80 (376)
452 3def_A T7I23.11 protein; chlor 90.8 0.13 4.3E-06 51.6 3.4 27 63-89 33-59 (262)
453 1bif_A 6-phosphofructo-2-kinas 90.8 0.12 4.1E-06 56.5 3.5 26 65-90 38-63 (469)
454 1ofh_A ATP-dependent HSL prote 90.8 0.15 5E-06 51.2 3.8 24 67-90 51-74 (310)
455 3llu_A RAS-related GTP-binding 90.8 0.11 3.9E-06 48.8 2.8 29 62-90 16-44 (196)
456 1h65_A Chloroplast outer envel 90.7 0.13 4.5E-06 51.6 3.3 28 62-89 35-62 (270)
457 2hup_A RAS-related protein RAB 90.7 0.15 5.2E-06 48.3 3.6 26 64-89 27-52 (201)
458 2atx_A Small GTP binding prote 90.6 0.14 5E-06 47.6 3.4 25 65-89 17-41 (194)
459 3iby_A Ferrous iron transport 90.6 0.11 3.9E-06 52.2 2.8 23 67-89 2-24 (256)
460 2b6h_A ADP-ribosylation factor 90.6 0.15 5.1E-06 48.1 3.4 25 64-88 27-51 (192)
461 3pfi_A Holliday junction ATP-d 90.6 0.19 6.5E-06 51.6 4.5 26 65-90 54-79 (338)
462 2h57_A ADP-ribosylation factor 90.5 0.12 4.1E-06 48.1 2.7 25 65-89 20-44 (190)
463 2r62_A Cell division protease 90.5 0.074 2.5E-06 52.8 1.3 23 68-90 46-68 (268)
464 2dby_A GTP-binding protein; GD 90.4 0.12 3.9E-06 55.5 2.8 23 67-89 2-24 (368)
465 1u94_A RECA protein, recombina 90.4 0.2 6.9E-06 53.3 4.6 38 60-100 60-99 (356)
466 4gzl_A RAS-related C3 botulinu 90.4 0.16 5.5E-06 48.3 3.5 26 64-89 28-53 (204)
467 2gco_A H9, RHO-related GTP-bin 90.4 0.15 5.2E-06 48.1 3.3 24 66-89 25-48 (201)
468 2v1u_A Cell division control p 90.3 0.13 4.4E-06 53.1 2.9 25 66-90 44-68 (387)
469 1jwy_B Dynamin A GTPase domain 90.3 0.13 4.5E-06 52.3 3.0 23 67-89 25-47 (315)
470 3d8b_A Fidgetin-like protein 1 90.3 0.24 8.1E-06 52.1 5.0 34 65-99 116-149 (357)
471 1jal_A YCHF protein; nucleotid 90.2 0.22 7.5E-06 53.3 4.7 23 67-89 3-25 (363)
472 1wf3_A GTP-binding protein; GT 90.2 0.15 5.2E-06 52.7 3.4 23 67-89 8-30 (301)
473 1um8_A ATP-dependent CLP prote 90.1 0.22 7.5E-06 52.3 4.5 23 68-90 74-96 (376)
474 2qag_A Septin-2, protein NEDD5 90.0 0.1 3.6E-06 55.3 2.0 23 67-89 38-60 (361)
475 2dy1_A Elongation factor G; tr 89.9 0.14 4.7E-06 58.8 3.0 24 67-90 10-33 (665)
476 3t5d_A Septin-7; GTP-binding p 89.9 0.16 5.5E-06 51.2 3.2 24 66-89 8-31 (274)
477 2qby_B CDC6 homolog 3, cell di 89.8 0.18 6.2E-06 52.3 3.6 27 64-90 43-69 (384)
478 1g41_A Heat shock protein HSLU 89.7 0.23 7.9E-06 54.6 4.5 32 68-100 52-83 (444)
479 3eie_A Vacuolar protein sortin 89.7 0.23 7.7E-06 51.3 4.2 33 66-99 51-83 (322)
480 2i1q_A DNA repair and recombin 89.7 0.17 5.8E-06 52.2 3.2 27 60-89 95-121 (322)
481 2z4s_A Chromosomal replication 89.6 0.17 5.8E-06 55.1 3.3 25 66-90 130-154 (440)
482 2zan_A Vacuolar protein sortin 89.6 0.31 1E-05 53.0 5.4 34 67-100 168-201 (444)
483 2x77_A ADP-ribosylation factor 89.5 0.14 4.8E-06 47.5 2.2 24 64-87 20-43 (189)
484 2yc2_C IFT27, small RAB-relate 89.5 0.089 3.1E-06 49.2 0.9 24 66-89 20-43 (208)
485 3cpj_B GTP-binding protein YPT 89.5 0.23 7.7E-06 47.9 3.8 25 65-89 12-36 (223)
486 2ce7_A Cell division protein F 89.5 0.18 6.1E-06 55.9 3.4 23 68-90 51-73 (476)
487 2j0v_A RAC-like GTP-binding pr 89.5 0.21 7.2E-06 47.3 3.5 24 66-89 9-32 (212)
488 2bjv_A PSP operon transcriptio 89.4 0.29 9.8E-06 48.6 4.6 23 68-90 31-53 (265)
489 3u61_B DNA polymerase accessor 89.4 0.26 9E-06 50.3 4.4 45 54-99 36-80 (324)
490 2aka_B Dynamin-1; fusion prote 89.3 0.18 6.3E-06 50.6 3.1 24 66-89 26-49 (299)
491 3bh0_A DNAB-like replicative h 89.3 0.23 7.7E-06 51.5 3.9 35 53-90 58-92 (315)
492 4b4t_K 26S protease regulatory 89.3 0.3 1E-05 53.4 4.9 35 66-101 206-240 (428)
493 4djt_A GTP-binding nuclear pro 89.1 0.093 3.2E-06 50.0 0.7 26 64-89 9-34 (218)
494 1osn_A Thymidine kinase, VZV-T 89.1 0.19 6.6E-06 53.3 3.2 29 66-94 12-41 (341)
495 3q3j_B RHO-related GTP-binding 89.1 0.26 8.9E-06 47.4 3.9 25 65-89 26-50 (214)
496 4b4t_M 26S protease regulatory 88.9 0.33 1.1E-05 53.2 4.9 35 66-101 215-249 (434)
497 2qp9_X Vacuolar protein sortin 88.8 0.26 9E-06 51.8 4.0 24 67-90 85-108 (355)
498 1tue_A Replication protein E1; 88.7 0.19 6.5E-06 50.1 2.7 23 68-90 60-82 (212)
499 4b4t_J 26S protease regulatory 88.7 0.31 1.1E-05 52.9 4.6 34 67-101 183-216 (405)
500 2xxa_A Signal recognition part 88.7 0.22 7.5E-06 54.4 3.4 27 64-90 98-124 (433)
No 1
>3tqc_A Pantothenate kinase; biosynthesis of cofactors, prosthetic groups, carriers, TRAN; HET: ADP; 2.30A {Coxiella burnetii}
Probab=99.90 E-value=8e-24 Score=223.89 Aligned_cols=202 Identities=19% Similarity=0.194 Sum_probs=162.5
Q ss_pred ccceeeeecCceEEEEecceeecc---CCcceEEEEECCCCCcHHHHHHHHHHhCC------CceEEEecCcccccc---
Q 006117 39 IEDTLSFEKGFFIVIRACQLLAQK---NHGIILVGVAGPSGAGKTVFTEKVLNFMP------SIAVITMDNYNDSSR--- 106 (660)
Q Consensus 39 ~~~~ls~~~g~~~vL~~Isl~i~~---ge~~~IIGI~GpSGSGKSTLak~L~~lLp------~~g~I~lDg~~~~~~--- 106 (660)
+...+++.++...+++++...+.. ...+++|||+||||||||||+++|.+++. .++.+.+|+++....
T Consensus 62 l~rll~~~~~~~~~l~~~~~~~l~~~~~~~p~iigI~GpsGSGKSTl~~~L~~ll~~~~~~~~v~~i~~D~f~~~~~~l~ 141 (321)
T 3tqc_A 62 LSRLLSFYVTARQTLQQATYQFLGKPEPKVPYIIGIAGSVAVGKSTTSRVLKALLSRWPDHPNVEVITTDGFLYSNAKLE 141 (321)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHTCCCCCCCEEEEEECCTTSSHHHHHHHHHHHHTTSTTCCCEEEEEGGGGBCCHHHHH
T ss_pred HHHHHHHhhcchHHHHHHHHHHhccCCCCCCEEEEEECCCCCCHHHHHHHHHHHhcccCCCCeEEEEeecccccchhhhh
Confidence 334444445555566666655443 35688999999999999999999999862 467799999865431
Q ss_pred --cccccCCCCCCCchhhHHHHHHhhhcCc-ccccccccccccccccceeeecCCccEEEEecceeeccc----------
Q 006117 107 --IIDGNFDDPRLTDYDTLLENIRGLKEGK-AVQVPIYDFKSSSRIGYRTLEVPSSRIVIIEGIYALSEK---------- 173 (660)
Q Consensus 107 --~i~~vfq~p~l~d~~tl~e~L~~L~~Gk-~I~~PiyD~s~~~rs~~~~~~v~~a~VVIVEGilaL~de---------- 173 (660)
.....+++|..+|...+.+.+..++.|+ .+..|.||+..+.+.......+.+.++||+||++++++.
T Consensus 142 ~~~~~~~~g~P~~~D~~~l~~~L~~L~~g~~~v~~P~yd~~~~~r~~~~~~~v~~~dIVIvEGi~lL~~~~~~~~~~~~~ 221 (321)
T 3tqc_A 142 KQGLMKRKGFPESYDMPSLLRVLNAIKSGQRNVRIPVYSHHYYDIVRGQYEIVDQPDIVILEGLNILQTGVRKTLQQLQV 221 (321)
T ss_dssp HTTCGGGTTSGGGBCHHHHHHHHHHHHTTCSSEEEEEEETTTTEEEEEEEEEECSCSEEEEECTTTTCCCCCSSSSSCCC
T ss_pred hHHHHhhccCcccccHHHHHHHHHhhhccccccccchhhhhccccccCceeeccCCCEEEEEccccccccccccccchhh
Confidence 1223467789999999999999999998 899999999999987655666788999999999999865
Q ss_pred -ccCCCCEEEEEEcChhHHHHHHHHHHHHHhC---------------CCHHH----HHHHHHhccccchhhcccCCcCcC
Q 006117 174 -LRPLIDLRVSVTGGVHFDLVKRVFRDIQRVG---------------QEPEE----IIHQISETVYPMYKAFIEPDLQTA 233 (660)
Q Consensus 174 -Lr~llDlkIfVdad~dirLiRRI~RDv~eRG---------------rs~E~----Vl~qy~~~v~P~~~~fIeP~k~~A 233 (660)
+.+.+|.+|||+++.++++.|++.||...+| .+.++ +..+|.....|++++||+|++++|
T Consensus 222 ~l~~~~D~~I~Vda~~d~~~~R~i~Rd~~~r~~a~~~~~s~~~~y~~~s~~ea~~~a~~~w~~~~~pn~~~~I~ptr~~A 301 (321)
T 3tqc_A 222 FVSDFFDFSLFVDAQAQVIQKWYIDRVLSFWRTTFKDPHSYFHYLTQMSETEVAAFAKHVWNEINKVNLMENILPYKNRA 301 (321)
T ss_dssp CGGGGCSEEEEEECCHHHHHHHHHHHHHHHHHTGGGSTTSTTGGGGGSCHHHHHHHHHHHHHHTHHHHHHHHTGGGGGGC
T ss_pred hhhhhcCeEEEEECCHHHHHHHHHHhcchhhhhhccChHHHHHHHhcCCHHHHHHHHHHHHHhccccCHHHhCccCccCc
Confidence 7889999999999999999999999988765 34443 345677777899999999999999
Q ss_pred cEEEeCC
Q 006117 234 HIKIINK 240 (660)
Q Consensus 234 DiII~N~ 240 (660)
|+||+.+
T Consensus 302 dlil~~g 308 (321)
T 3tqc_A 302 QLILEKA 308 (321)
T ss_dssp SEEEEEC
T ss_pred eEEEecC
Confidence 9999743
No 2
>1sq5_A Pantothenate kinase; P-loop, transferase; HET: PAU ADP; 2.20A {Escherichia coli} SCOP: c.37.1.6 PDB: 1esm_A* 1esn_A*
Probab=99.87 E-value=1.1e-22 Score=212.68 Aligned_cols=191 Identities=16% Similarity=0.197 Sum_probs=145.7
Q ss_pred EEEEecceee----------------ccCCcceEEEEECCCCCcHHHHHHHHHHhC---CCceEEEe---cCccccc---
Q 006117 51 IVIRACQLLA----------------QKNHGIILVGVAGPSGAGKTVFTEKVLNFM---PSIAVITM---DNYNDSS--- 105 (660)
Q Consensus 51 ~vL~~Isl~i----------------~~ge~~~IIGI~GpSGSGKSTLak~L~~lL---p~~g~I~l---Dg~~~~~--- 105 (660)
.+++++++.+ ....++.+|||+||||||||||+++|++++ |..|.|.+ |+++...
T Consensus 49 ~~~~~i~~~~~~~~~~~~~~~~~l~~~~~~~g~iigI~G~~GsGKSTl~~~L~~~l~~~~~~G~i~vi~~d~~~~~~~~~ 128 (308)
T 1sq5_A 49 PLSRLLNFYISSNLRRQAVLEQFLGTNGQRIPYIISIAGSVAVGKSTTARVLQALLSRWPEHRRVELITTDGFLHPNQVL 128 (308)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHTCC-CCCCEEEEEEECTTSSHHHHHHHHHHHHTTSTTCCCEEEEEGGGGBCCHHHH
T ss_pred HHHHHHHHHHhhhhhHHHHHHHHhccCCCCCCEEEEEECCCCCCHHHHHHHHHHHHhhCCCCCeEEEEecCCccCcHHHH
Confidence 4678888877 112233499999999999999999999975 45666666 9986432
Q ss_pred ccccccCCCCCCCchhhHHHH---HHhhhcCcc-cccccccccccccccceeeecCCccEEEEecceeecc---------
Q 006117 106 RIIDGNFDDPRLTDYDTLLEN---IRGLKEGKA-VQVPIYDFKSSSRIGYRTLEVPSSRIVIIEGIYALSE--------- 172 (660)
Q Consensus 106 ~~i~~vfq~p~l~d~~tl~e~---L~~L~~Gk~-I~~PiyD~s~~~rs~~~~~~v~~a~VVIVEGilaL~d--------- 172 (660)
..++++ |...+++..++.++ +..+..+.. +.+|.|++..+.+.......+.+.++||+||++++++
T Consensus 129 ~~~~~v-q~~~~~~~~~~~~~~~~~~~l~~~~~~i~~P~~~~~~~~~~~~~~~~~~~~~ivIlEG~~l~~~~~~~~~~~~ 207 (308)
T 1sq5_A 129 KERGLM-KKKGFPESYDMHRLVKFVSDLKSGVPNVTAPVYSHLIYDVIPDGDKTVVQPDILILEGLNVLQSGMDYPHDPH 207 (308)
T ss_dssp HHHTCT-TCTTSGGGBCHHHHHHHHHHHTTTCSCEEECCEETTTTEECTTCCEEEC-CCEEEEECTTTTCCGGGCTTSCC
T ss_pred HhCCEe-ecCCCCCCccHHHHHHHHHHHhCCCCceecccccccccCcccccceecCCCCEEEECchhhCCCccccccccc
Confidence 224455 55555444444444 455666776 8999999999887754334456678999999999986
Q ss_pred --cccCCCCEEEEEEcChhHHHHHHHHHHHHH---------------hCCCHHH----HHHHHHhccccchhhcccCCcC
Q 006117 173 --KLRPLIDLRVSVTGGVHFDLVKRVFRDIQR---------------VGQEPEE----IIHQISETVYPMYKAFIEPDLQ 231 (660)
Q Consensus 173 --eLr~llDlkIfVdad~dirLiRRI~RDv~e---------------RGrs~E~----Vl~qy~~~v~P~~~~fIeP~k~ 231 (660)
.+.+.+|.+|||++|.++++.|++.|+... +|++.++ +.+||...++|++++|++|.++
T Consensus 208 ~~~~~~~~D~~i~V~~~~~~~~~R~~~R~~~~r~~~~r~~~~~~~~~~g~s~e~a~~~i~~q~~~~~~~~~~~~i~~~~~ 287 (308)
T 1sq5_A 208 HVFVSDFVDFSIYVDAPEDLLQTWYINRFLKFREGAFTDPDSYFHNYAKLTKEEAIKTAMTLWKEINWLNLKQNILPTRE 287 (308)
T ss_dssp SSCGGGGCSEEEEEECCHHHHHHHHHHHHHHHHHTTTTCTTSTTHHHHTSCHHHHHHHHHHHHHHTHHHHHHHTTGGGGG
T ss_pred hHHHHHhCCEEEEEECCHHHHHHHHHHHHHHHHHhhccCCchhhhcccCCCHHHHHHHHHHHHHhccHHHHHHHcccccc
Confidence 678899999999999999999999998642 4888886 4556777788999999999999
Q ss_pred cCcEEEeCCCC
Q 006117 232 TAHIKIINKFN 242 (660)
Q Consensus 232 ~ADiII~N~~~ 242 (660)
.||+||+|+.+
T Consensus 288 ~AD~vI~n~~~ 298 (308)
T 1sq5_A 288 RASLILTKSAN 298 (308)
T ss_dssp GCSEEEEECGG
T ss_pred cCcEEEEeCCC
Confidence 99999998754
No 3
>3c8u_A Fructokinase; YP_612366.1, putative fructose transport system kinase, STRU genomics, joint center for structural genomics, JCSG; 1.95A {Silicibacter SP}
Probab=99.85 E-value=1.8e-21 Score=191.17 Aligned_cols=169 Identities=21% Similarity=0.264 Sum_probs=139.4
Q ss_pred eEEEEECCCCCcHHHHHHHHHHhC-C---CceEEEecCcccccc---cccc--cCCCCCCCchhhHHHHHHhhhcCcccc
Q 006117 67 ILVGVAGPSGAGKTVFTEKVLNFM-P---SIAVITMDNYNDSSR---IIDG--NFDDPRLTDYDTLLENIRGLKEGKAVQ 137 (660)
Q Consensus 67 ~IIGI~GpSGSGKSTLak~L~~lL-p---~~g~I~lDg~~~~~~---~i~~--vfq~p~l~d~~tl~e~L~~L~~Gk~I~ 137 (660)
.+|||+||||||||||+++|++.+ | ..|.|.+|+++.... ..+. ....+..++...+.+.+..+..++.+.
T Consensus 23 ~~v~I~G~sGsGKSTl~~~l~~~~~~~g~~~g~v~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~i~ 102 (208)
T 3c8u_A 23 QLVALSGAPGSGKSTLSNPLAAALSAQGLPAEVVPMDGFHLDNRLLEPRGLLPRKGAPETFDFEGFQRLCHALKHQERVI 102 (208)
T ss_dssp EEEEEECCTTSCTHHHHHHHHHHHHHTTCCEEEEESGGGBCCHHHHGGGTCGGGTTSGGGBCHHHHHHHHHHHHHCSCEE
T ss_pred eEEEEECCCCCCHHHHHHHHHHHHhhcCCceEEEecCCCcCCHHHHHHhcccccCCCCchhhHHHHHHHHHHHhcCCcee
Confidence 399999999999999999999998 3 489999999865431 1111 123456677777888888898898999
Q ss_pred cccccccccccccceeeecCCc-cEEEEecceeecc-----cccCCCCEEEEEEcChhHHHHHHHHHHHHHhCCCHHHHH
Q 006117 138 VPIYDFKSSSRIGYRTLEVPSS-RIVIIEGIYALSE-----KLRPLIDLRVSVTGGVHFDLVKRVFRDIQRVGQEPEEII 211 (660)
Q Consensus 138 ~PiyD~s~~~rs~~~~~~v~~a-~VVIVEGilaL~d-----eLr~llDlkIfVdad~dirLiRRI~RDv~eRGrs~E~Vl 211 (660)
.|.|++..+.+.+ +.+.+..+ +++|+||.|++.+ ++.+.+|.+|||+++.+.++.|.+.|+ .++|++.+++.
T Consensus 103 ~p~~d~~~~~~~g-~~~~v~~~~~~~i~eg~~~l~de~~~~~l~~~~d~~i~vd~~~~~~~~R~~~R~-~~~g~t~~~~~ 180 (208)
T 3c8u_A 103 YPLFDRARDIAIA-GAAEVGPECRVAIIEGNYLLFDAPGWRDLTAIWDVSIRLEVPMADLEARLVQRW-LDHGLNHDAAV 180 (208)
T ss_dssp EEEEETTTTEEEE-EEEEECTTCCEEEEEESSTTBCSTTGGGGGGTCSEEEEECCCHHHHHHHHHHHH-HHTTCCHHHHH
T ss_pred cccCCccccCCCC-CceEEcCCCcEEEECCceeccCCchhHHHHHhcCEEEEEeCCHHHHHHHHHHHH-HhcCCCHHHHH
Confidence 9999999887544 55667776 8999999998764 357899999999999999888777775 56799999999
Q ss_pred HHHHhccccchhhcccCCcCcCcEEEe
Q 006117 212 HQISETVYPMYKAFIEPDLQTAHIKII 238 (660)
Q Consensus 212 ~qy~~~v~P~~~~fIeP~k~~ADiII~ 238 (660)
++|...++|++ +|++|.+..||+||+
T Consensus 181 ~~~~~~~~~~~-~~i~~~~~~aD~vi~ 206 (208)
T 3c8u_A 181 ARAQGNDLANA-RAIEAARLPADLTWP 206 (208)
T ss_dssp HHHHTHHHHHH-HHHHTTBCCCSEEEC
T ss_pred HHHHhccHHHH-HHHHhCCCCCCEEee
Confidence 99988899987 899999999999995
No 4
>3asz_A Uridine kinase; cytidine phosphorylation, transferase; HET: C5P; 2.25A {Thermus thermophilus} PDB: 3asy_A*
Probab=99.85 E-value=4.3e-21 Score=187.27 Aligned_cols=175 Identities=31% Similarity=0.524 Sum_probs=146.9
Q ss_pred eEEEEECCCCCcHHHHHHHHHHhC-CCceEEEecCccccc------ccccccCCCCCCCchhhHHHHHHhhhcCcccccc
Q 006117 67 ILVGVAGPSGAGKTVFTEKVLNFM-PSIAVITMDNYNDSS------RIIDGNFDDPRLTDYDTLLENIRGLKEGKAVQVP 139 (660)
Q Consensus 67 ~IIGI~GpSGSGKSTLak~L~~lL-p~~g~I~lDg~~~~~------~~i~~vfq~p~l~d~~tl~e~L~~L~~Gk~I~~P 139 (660)
.+|||+||||||||||+++|++++ |..+.+..|.+.... ....+.|+.+..++...+.+.+..+..++.+..|
T Consensus 7 ~~i~i~G~~GsGKSTl~~~l~~~~~~~i~~v~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ 86 (211)
T 3asz_A 7 FVIGIAGGTASGKTTLAQALARTLGERVALLPMDHYYKDLGHLPLEERLRVNYDHPDAFDLALYLEHAQALLRGLPVEMP 86 (211)
T ss_dssp EEEEEEESTTSSHHHHHHHHHHHHGGGEEEEEGGGCBCCCTTSCHHHHHHSCTTSGGGBCHHHHHHHHHHHHTTCCEEEC
T ss_pred EEEEEECCCCCCHHHHHHHHHHHhCCCeEEEecCccccCcccccHHHhcCCCCCChhhhhHHHHHHHHHHHHcCCCcCCC
Confidence 499999999999999999999997 347888888764321 1123445666677777888888888878888889
Q ss_pred cccccccccccceeeecCCccEEEEecceeeccc-ccCCCCEEEEEEcChhHHHHHHHHHHHHHhCCCHHHHHHHHHhcc
Q 006117 140 IYDFKSSSRIGYRTLEVPSSRIVIIEGIYALSEK-LRPLIDLRVSVTGGVHFDLVKRVFRDIQRVGQEPEEIIHQISETV 218 (660)
Q Consensus 140 iyD~s~~~rs~~~~~~v~~a~VVIVEGilaL~de-Lr~llDlkIfVdad~dirLiRRI~RDv~eRGrs~E~Vl~qy~~~v 218 (660)
.++++.+++.. +...+..++++++||.+++.++ ....+|.+||||++.+.++.|++.|+..++|.+...+.++|...+
T Consensus 87 ~~~~s~g~~~~-~~~~~~~~~~li~~~~ll~~de~~~~~~d~~i~ld~~~~~~~~r~l~r~~~~~g~t~~~~~~~~~~~~ 165 (211)
T 3asz_A 87 VYDFRAYTRSP-RRTPVRPAPVVILEGILVLYPKELRDLMDLKVFVDADADERFIRRLKRDVLERGRSLEGVVAQYLEQV 165 (211)
T ss_dssp CEETTTTEECS-SCEEECCCSEEEEESTTTTSSHHHHTTCSEEEEEECCHHHHHHHHHHHHHHHSCCCHHHHHHHHHHTH
T ss_pred cccCcccCCCC-CeEEeCCCcEEEEeehhhccCHHHHHhcCEEEEEeCCHHHHHHHHHHHHHHHhCCCHHHHHHHHHHhh
Confidence 99998887654 3345677899999999999865 567899999999999999999999998889999999999999999
Q ss_pred ccchhhcccCCcCcCcEEEeCCCC
Q 006117 219 YPMYKAFIEPDLQTAHIKIINKFN 242 (660)
Q Consensus 219 ~P~~~~fIeP~k~~ADiII~N~~~ 242 (660)
.|+|.+|++|.+..||+||+|+.+
T Consensus 166 ~~~~~~~~~~~~~~aD~ii~~~~~ 189 (211)
T 3asz_A 166 KPMHLHFVEPTKRYADVIVPRGGQ 189 (211)
T ss_dssp HHHHHHTTGGGGGGCSEEEESTTS
T ss_pred hhhHHHhcccchhcCeEEEeCCCc
Confidence 999999999999999999998764
No 5
>2jeo_A Uridine-cytidine kinase 1; UCK, transferase, ATP-binding, nucleoside kinase, nucleotide-binding; 2.50A {Homo sapiens} PDB: 2uvq_A*
Probab=99.84 E-value=8.9e-21 Score=190.95 Aligned_cols=191 Identities=28% Similarity=0.487 Sum_probs=136.0
Q ss_pred eecCceEEEEecceeeccCCcceEEEEECCCCCcHHHHHHHHHHhCC---------CceEEEecCccccc--c------c
Q 006117 45 FEKGFFIVIRACQLLAQKNHGIILVGVAGPSGAGKTVFTEKVLNFMP---------SIAVITMDNYNDSS--R------I 107 (660)
Q Consensus 45 ~~~g~~~vL~~Isl~i~~ge~~~IIGI~GpSGSGKSTLak~L~~lLp---------~~g~I~lDg~~~~~--~------~ 107 (660)
+..|...+|++++|.+++|. +|||+||||||||||+++|++.++ ..+.+..|.++..- . .
T Consensus 7 ~~~~~~~~l~~isl~i~~g~---iigI~G~~GsGKSTl~k~L~~~lG~~~~~~~~~~i~~v~~d~~~~~l~~~~~~~~~~ 83 (245)
T 2jeo_A 7 HSSGVDLGTENLYFQSMRPF---LIGVSGGTASGKSTVCEKIMELLGQNEVEQRQRKVVILSQDRFYKVLTAEQKAKALK 83 (245)
T ss_dssp ----------------CCSE---EEEEECSTTSSHHHHHHHHHHHHTGGGSCGGGCSEEEEEGGGGBCCCCHHHHHHHHT
T ss_pred ccCCCceeecceeccCCCCE---EEEEECCCCCCHHHHHHHHHHHhchhcccccCCceEEEeCCcCccccCHhHhhhhhc
Confidence 34456779999999999988 999999999999999999999763 23467777654211 0 0
Q ss_pred ccccCCCCCCCchhhHHHHHHhhhcCcccccccccccccccccceeeecCCccEEEEecceeec-ccccCCCCEEEEEEc
Q 006117 108 IDGNFDDPRLTDYDTLLENIRGLKEGKAVQVPIYDFKSSSRIGYRTLEVPSSRIVIIEGIYALS-EKLRPLIDLRVSVTG 186 (660)
Q Consensus 108 i~~vfq~p~l~d~~tl~e~L~~L~~Gk~I~~PiyD~s~~~rs~~~~~~v~~a~VVIVEGilaL~-deLr~llDlkIfVda 186 (660)
-.+.|+++..++...+.+.+..+..+.....+.|+...+.+... ...+.+.+++|+||++++. ..+.+.+|.+|||++
T Consensus 84 ~~~~~~~~~~~~~~~~~~~L~~l~~~~~~~~~~ls~g~~~r~~~-~~~~~~~~~lilDg~~~~~~~~l~~~~~~~i~v~t 162 (245)
T 2jeo_A 84 GQYNFDHPDAFDNDLMHRTLKNIVEGKTVEVPTYDFVTHSRLPE-TTVVYPADVVLFEGILVFYSQEIRDMFHLRLFVDT 162 (245)
T ss_dssp TCCCTTSGGGBCHHHHHHHHHHHHTTCCEEECCEETTTTEECSS-CEEECCCSEEEEECTTTTTSHHHHTTCSEEEEEEC
T ss_pred cCCCCCCcccccHHHHHHHHHHHHCCCCeecccccccccCccCc-eEEecCCCEEEEeCccccccHHHHHhcCeEEEEEC
Confidence 11345556566666677777777666666777788877777653 3344567899999998875 577788999999999
Q ss_pred ChhHHHHHHHHHHHHHhCCCHHHHHHHHHhccccchhhcccCCcCcCcEEEeCC
Q 006117 187 GVHFDLVKRVFRDIQRVGQEPEEIIHQISETVYPMYKAFIEPDLQTAHIKIINK 240 (660)
Q Consensus 187 d~dirLiRRI~RDv~eRGrs~E~Vl~qy~~~v~P~~~~fIeP~k~~ADiII~N~ 240 (660)
+.+.++.|++.|++ ++|++.+++.++|..+++|.+.+|++|.++.||+||++.
T Consensus 163 h~~~~~~r~~~r~~-~~G~~~e~~~~~~~~~~~~~~~~~i~p~~~~aD~vi~~~ 215 (245)
T 2jeo_A 163 DSDVRLSRRVLRDV-RRGRDLEQILTQYTTFVKPAFEEFCLPTKKYADVIIPRG 215 (245)
T ss_dssp CHHHHHHHHHHHHT-C---CHHHHHHHHHHTHHHHHHHHTGGGGGGCSEEEESS
T ss_pred CHHHHHHHHHHHHH-HcCCCHHHHHHHHHHhhhHhHHHhCCcchhcceEEEcCC
Confidence 99999999999988 779999999999999999999999999999999999754
No 6
>3aez_A Pantothenate kinase; transferase, homodimer, COA biosynthesis, nucleotide binding binding, cytoplasm, nucleotide-binding; HET: GDP PAZ; 2.20A {Mycobacterium tuberculosis} PDB: 2ges_A* 2geu_A* 2gev_A* 2zs7_A* 2zs8_A* 2zs9_A* 2zsa_A* 2zsb_A* 2zsd_A* 2zse_A* 2zsf_A* 2get_A* 3af0_A* 3af1_A* 3af2_A* 3af3_A* 3af4_A* 3avp_A* 3avo_A* 3avq_A*
Probab=99.83 E-value=3.1e-20 Score=195.39 Aligned_cols=179 Identities=17% Similarity=0.178 Sum_probs=142.8
Q ss_pred eccCCcceEEEEECCCCCcHHHHHHHHHHhC-C-----CceEEEecCcccccc---cccc--cCCCCCCCchhhHHHHHH
Q 006117 60 AQKNHGIILVGVAGPSGAGKTVFTEKVLNFM-P-----SIAVITMDNYNDSSR---IIDG--NFDDPRLTDYDTLLENIR 128 (660)
Q Consensus 60 i~~ge~~~IIGI~GpSGSGKSTLak~L~~lL-p-----~~g~I~lDg~~~~~~---~i~~--vfq~p~l~d~~tl~e~L~ 128 (660)
+++|+ +|||+||||||||||+++|++++ | ..+.|.+|++..... .+.+ .+..|..++...+.+.|.
T Consensus 87 ~~~g~---ivgI~G~sGsGKSTL~~~L~gll~~~~G~~~v~~v~qd~~~~~~t~~e~~~~~~~~g~~~~~d~~~~~~~L~ 163 (312)
T 3aez_A 87 RPVPF---IIGVAGSVAVGKSTTARVLQALLARWDHHPRVDLVTTDGFLYPNAELQRRNLMHRKGFPESYNRRALMRFVT 163 (312)
T ss_dssp SCCCE---EEEEECCTTSCHHHHHHHHHHHHHTSTTCCCEEEEEGGGGBCCHHHHHHTTCTTCTTSGGGBCHHHHHHHHH
T ss_pred CCCCE---EEEEECCCCchHHHHHHHHHhhccccCCCCeEEEEecCccCCcccHHHHHHHHHhcCCChHHHHHHHHHHHH
Confidence 45555 99999999999999999999997 4 367888888754321 1111 134456677777888888
Q ss_pred hhhcCcc-cccccccccccccccceeeecCCccEEEEecceeec----ccccCCCCEEEEEEcChhHHHHHHHHHHHHH-
Q 006117 129 GLKEGKA-VQVPIYDFKSSSRIGYRTLEVPSSRIVIIEGIYALS----EKLRPLIDLRVSVTGGVHFDLVKRVFRDIQR- 202 (660)
Q Consensus 129 ~L~~Gk~-I~~PiyD~s~~~rs~~~~~~v~~a~VVIVEGilaL~----deLr~llDlkIfVdad~dirLiRRI~RDv~e- 202 (660)
.+..+.. ...|.|+...++|+......+...+++|+||++++. ..+.+.+|.+|||+++.+.+..|++.|.+..
T Consensus 164 ~l~~~~~~~~~~~lS~G~~qRv~~a~al~~~p~ilIlDep~~~~d~~~~~l~~~~D~~I~V~a~~~~~~~R~i~R~~~~r 243 (312)
T 3aez_A 164 SVKSGSDYACAPVYSHLHYDIIPGAEQVVRHPDILILEGLNVLQTGPTLMVSDLFDFSLYVDARIEDIEQWYVSRFLAMR 243 (312)
T ss_dssp HHHTTCSCEEEEEEETTTTEEEEEEEEEECSCSEEEEECTTTTCCCSSCCGGGGCSEEEEEEECHHHHHHHHHHHHHHHT
T ss_pred HhCCCcccCCcccCChhhhhhhhhHHHhccCCCEEEECCccccCCcchHHHHHhcCcEEEEECCHHHHHHHHHHHHHHHH
Confidence 8876554 677899999888876444556778999999999997 4788999999999999999999999997753
Q ss_pred --------------hCCCHHHHH----HHHHhccccchhhcccCCcCcCcEEEeCCC
Q 006117 203 --------------VGQEPEEII----HQISETVYPMYKAFIEPDLQTAHIKIINKF 241 (660)
Q Consensus 203 --------------RGrs~E~Vl----~qy~~~v~P~~~~fIeP~k~~ADiII~N~~ 241 (660)
.|++.+++. ++|...++|++.+||+|++..||+||+|+.
T Consensus 244 d~~~r~~~~~~~~~~g~s~e~a~~~v~~~~~~~~~p~~~~~i~p~~~~ADlii~~~~ 300 (312)
T 3aez_A 244 TTAFADPESHFHHYAAFSDSQAVVAAREIWRTINRPNLVENILPTRPRATLVLRKDA 300 (312)
T ss_dssp TTGGGSTTSTTGGGTTCCHHHHHHHHHHHHHHTHHHHHHHTTGGGGGGCSEEEEECT
T ss_pred hccccCcchhhhcccCCCHHHHHHHHHHHHHhccHHHHHHhccCCCCCCeEEEecCC
Confidence 277887776 667788899999999999999999998764
No 7
>1a7j_A Phosphoribulokinase; transferase, calvin cycle; 2.50A {Rhodobacter sphaeroides} SCOP: c.37.1.6
Probab=99.80 E-value=2.1e-20 Score=194.61 Aligned_cols=170 Identities=17% Similarity=0.252 Sum_probs=133.0
Q ss_pred cceEEEEECCCCCcHHHHHHHHHHhCC----CceEEEecCcccc-ccc----------cc-ccCCC--CCCCchhhHHHH
Q 006117 65 GIILVGVAGPSGAGKTVFTEKVLNFMP----SIAVITMDNYNDS-SRI----------ID-GNFDD--PRLTDYDTLLEN 126 (660)
Q Consensus 65 ~~~IIGI~GpSGSGKSTLak~L~~lLp----~~g~I~lDg~~~~-~~~----------i~-~vfq~--p~l~d~~tl~e~ 126 (660)
++.+|||+||+||||||+++.|+..++ ....|++|+++.. ... .+ ..+++ +..++...+.+.
T Consensus 4 ~~~iIgItG~sGSGKSTva~~L~~~lg~~~~~~~vI~~D~~~r~~~~~~~~~~~~~~~~g~~~~~~fg~~~~d~~~l~~~ 83 (290)
T 1a7j_A 4 KHPIISVTGSSGAGTSTVKHTFDQIFRREGVKAVSIEGDAFHRFNRADMKAELDRRYAAGDATFSHFSYEANELKELERV 83 (290)
T ss_dssp TSCEEEEESCC---CCTHHHHHHHHHHHHTCCEEEEEGGGGBSCCHHHHHHHHHHHHHHTCTTCSTTSGGGBCHHHHHHH
T ss_pred CceEEEEECCCCCCHHHHHHHHHHHHhhcCCCeeEeecchhhcCCHHHhhhhhhhhhhccCcCcCCCChhhhcHHHHHHH
Confidence 356999999999999999999998762 3678999998752 111 11 34444 778888888888
Q ss_pred HHhhhcCcccccccccc-----ccccccccee---eec-CCccEEEEecceee----cccccCCCCEEEEEEcChhHHHH
Q 006117 127 IRGLKEGKAVQVPIYDF-----KSSSRIGYRT---LEV-PSSRIVIIEGIYAL----SEKLRPLIDLRVSVTGGVHFDLV 193 (660)
Q Consensus 127 L~~L~~Gk~I~~PiyD~-----s~~~rs~~~~---~~v-~~a~VVIVEGilaL----~deLr~llDlkIfVdad~dirLi 193 (660)
+..+..++.+..|.|++ ..+.+..... ..+ ...+++|+||++++ ...+.+.+|++|||+++.++++.
T Consensus 84 l~~l~~~~~i~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~vvIvEG~~~~~~~~~~~v~~~~D~~IfV~a~~~~rl~ 163 (290)
T 1a7j_A 84 FREYGETGQGRTRTYVHDDAEAARTGVAPGNFTDWRDFDSDSHLLFYEGLHGAVVNSEVNIAGLADLKIGVVPVINLEWI 163 (290)
T ss_dssp HHHHHHHSCCEECCCC------CCSSCCTTSCCCCEECCSSCSEEEEEESCTTCBCSSCBCGGGCSEEEEEEECHHHHHH
T ss_pred HHHHHcCCcccceeeccccccccccCCCCCccccccccCCCCCEEEEEecccccccchHhHHHhCCEEEEEECCHHHHHH
Confidence 88888888899999955 2333322111 123 35789999999998 35688999999999999999999
Q ss_pred HHHHHHHHHhCCCHHHHHHHHHhccccchhhcccCCcCcCcE
Q 006117 194 KRVFRDIQRVGQEPEEIIHQISETVYPMYKAFIEPDLQTAHI 235 (660)
Q Consensus 194 RRI~RDv~eRGrs~E~Vl~qy~~~v~P~~~~fIeP~k~~ADi 235 (660)
||+.||..+||++.++++++|..+ +|+|.+|++|.+..||+
T Consensus 164 Rrl~Rd~~~RG~s~e~v~~~i~~r-~~~~~r~i~p~~~~AD~ 204 (290)
T 1a7j_A 164 QKIHRDRATRGYTTEAVTDVILRR-MHAYVHCIVPQFSQTDI 204 (290)
T ss_dssp HHHHHTSSSCCSCCCCHHHHHHHH-HHHHHHHTGGGGGTCSE
T ss_pred HHhhhhhhhcCCChHHHHHHHHHh-CccHHHhhhhhhccCCE
Confidence 999999999999999999999888 99999999999999999
No 8
>1uj2_A Uridine-cytidine kinase 2; alpha/beta mononucleotide-binding HOLD, transferase; HET: C5P ADP; 1.80A {Homo sapiens} SCOP: c.37.1.6 PDB: 1uei_A* 1uej_A* 1udw_A 1ufq_A* 1xrj_A*
Probab=99.79 E-value=3.7e-19 Score=179.81 Aligned_cols=175 Identities=30% Similarity=0.540 Sum_probs=145.5
Q ss_pred CCcceEEEEECCCCCcHHHHHHHHHHhCCC---------ceEEEecCccccc-------cc-ccccCCCCCCCchhhHHH
Q 006117 63 NHGIILVGVAGPSGAGKTVFTEKVLNFMPS---------IAVITMDNYNDSS-------RI-IDGNFDDPRLTDYDTLLE 125 (660)
Q Consensus 63 ge~~~IIGI~GpSGSGKSTLak~L~~lLp~---------~g~I~lDg~~~~~-------~~-i~~vfq~p~l~d~~tl~e 125 (660)
..++++|||+|++||||||+++.|+..++. +..++.|+++... .. -.++|++|..++...+.+
T Consensus 19 ~~~~~iI~I~G~~GSGKST~a~~L~~~lg~~~~d~~~~~~~~i~~D~~~~~~~~~~~~~~~~g~~~f~~~~~~d~~~l~~ 98 (252)
T 1uj2_A 19 GGEPFLIGVSGGTASGKSSVCAKIVQLLGQNEVDYRQKQVVILSQDSFYRVLTSEQKAKALKGQFNFDHPDAFDNELILK 98 (252)
T ss_dssp --CCEEEEEECSTTSSHHHHHHHHHHHTTGGGSCGGGCSEEEEEGGGGBCCCCHHHHHHHHTTCSCTTSGGGBCHHHHHH
T ss_pred CCCcEEEEEECCCCCCHHHHHHHHHHHhhhhcccccCCceEEEecCccccccChhhhhhhccCCCCCCCcchhhHHHHHH
Confidence 345789999999999999999999997731 2378999986421 01 135788899999999999
Q ss_pred HHHhhhcCcccccccccccccccccceeeecCCccEEEEecceee-cccccCCCCEEEEEEcChhHHHHHHHHHHHHHhC
Q 006117 126 NIRGLKEGKAVQVPIYDFKSSSRIGYRTLEVPSSRIVIIEGIYAL-SEKLRPLIDLRVSVTGGVHFDLVKRVFRDIQRVG 204 (660)
Q Consensus 126 ~L~~L~~Gk~I~~PiyD~s~~~rs~~~~~~v~~a~VVIVEGilaL-~deLr~llDlkIfVdad~dirLiRRI~RDv~eRG 204 (660)
.|..+..+..+..|.||+..+.+.. ......+.++||+||++++ .+.+.+.+|.+|||+++.++++.|+..|+...+|
T Consensus 99 ~L~~l~~~~~v~~~~~d~~~~~~~~-~~~~~~~~~~vIveG~~~~~~~~~~~~~d~vi~l~~~~e~~~~R~~~R~~~~rg 177 (252)
T 1uj2_A 99 TLKEITEGKTVQIPVYDFVSHSRKE-ETVTVYPADVVLFEGILAFYSQEVRDLFQMKLFVDTDADTRLSRRVLRDISERG 177 (252)
T ss_dssp HHHHHHTTCCEEEEEEETTTTEEEE-EEEEECCCSEEEEECTTTTSSHHHHHHCSEEEEEECCHHHHHHHHHHHHHHHSC
T ss_pred HHHHHHcCCeeecCccccccccCCC-ceeeeCCCcEEEEeeeccccCHHHHHhcCeeEEEeCCHHHHHHHHHHHHHhhhC
Confidence 9999988888999999999887663 3334456789999999987 4577788999999999999999999989887889
Q ss_pred CCHHHHHHHHHhccccchhhcccCCcCcCcEEEe
Q 006117 205 QEPEEIIHQISETVYPMYKAFIEPDLQTAHIKII 238 (660)
Q Consensus 205 rs~E~Vl~qy~~~v~P~~~~fIeP~k~~ADiII~ 238 (660)
.+.+++.++|..++.+.|.++++|.+..||++|+
T Consensus 178 ~~~e~i~~~~~~~~~~~~~~~i~~~~~~ad~vI~ 211 (252)
T 1uj2_A 178 RDLEQILSQYITFVKPAFEEFCLPTKKYADVIIP 211 (252)
T ss_dssp CCHHHHHHHHHHTHHHHHHHHTGGGGGGCSEEEE
T ss_pred CCHHHHHHHHHHhccHHHHHHhhhhhhcCcEEEe
Confidence 9999999999998889999999999999999995
No 9
>2ga8_A Hypothetical 39.9 kDa protein; YFR007W, YFH7, unknown function; HET: CME; 1.77A {Saccharomyces cerevisiae} PDB: 2gaa_A*
Probab=99.78 E-value=5.9e-20 Score=196.47 Aligned_cols=143 Identities=18% Similarity=0.166 Sum_probs=121.0
Q ss_pred eEEEecCccccccc---------ccccCCCCCCCchhhHHHHHHhhhcC-----------------------------cc
Q 006117 94 AVITMDNYNDSSRI---------IDGNFDDPRLTDYDTLLENIRGLKEG-----------------------------KA 135 (660)
Q Consensus 94 g~I~lDg~~~~~~~---------i~~vfq~p~l~d~~tl~e~L~~L~~G-----------------------------k~ 135 (660)
..|++|||+..... ....+++|..||...+.+.+..|+++ ..
T Consensus 157 ~vi~mDgFh~~~~~L~~~~d~~~~~~rrG~P~tfD~~~l~~~l~~L~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~ 236 (359)
T 2ga8_A 157 QIVPMDGFHLSRRCLDLFKDPQTAHKRRGSPSTFDSNNFLQLCKILAKTSLCKVSSHHKFYSTSSVFEKLSKTFSQTIPD 236 (359)
T ss_dssp EEEEGGGGBCCHHHHTTSSSTHHHHTTTTSGGGBCHHHHHHHHHHHHHHHTSCCC-------CCCHHHHHHTCEETTCCC
T ss_pred EEEecCcCCCCHHHHhhccCcchhhccCCCCccccHHHHHHHHHHHHcCCcccccccccccccccccccccccccccCce
Confidence 46789999765422 23567889999999999999988877 56
Q ss_pred cccccccccccccccceeeecCCccEEEEecceeecc-----cccCCCC-----EEEEEEcChhHHHHHHHHHHHHHhCC
Q 006117 136 VQVPIYDFKSSSRIGYRTLEVPSSRIVIIEGIYALSE-----KLRPLID-----LRVSVTGGVHFDLVKRVFRDIQRVGQ 205 (660)
Q Consensus 136 I~~PiyD~s~~~rs~~~~~~v~~a~VVIVEGilaL~d-----eLr~llD-----lkIfVdad~dirLiRRI~RDv~eRGr 205 (660)
+..|.||+..+++........+..++||+||++++.+ ++++++| ++|||++|.++++.|.+.|++. +|+
T Consensus 237 v~~P~yD~~~~d~~~~~~~v~~~~~iVIvEGi~LL~e~~~w~~l~~l~D~~~~~~~i~Vdad~ev~~~Rli~R~~~-~Gl 315 (359)
T 2ga8_A 237 IFVPGFNHALKDPTPDQYCISKFTRIVILEGLYLLYDQENWKKIYKTLADTGALLVYKIDIDYEATEERVAKRHLQ-SGL 315 (359)
T ss_dssp EEEEEEETTTTEEEEEEEEECTTCCEEEEEESSTTBCSHHHHHHHHHHHTTTCEEEEEEECCHHHHHHHHHHHHHH-TTS
T ss_pred EeeccccCccCCCCCCceEecCCCCEEEEEeehhhccccchhhhhhccccccceEEEEEECCHHHHHHHHHHhhhc-cCC
Confidence 8899999999998875444444479999999998876 3667899 9999999999999999999884 799
Q ss_pred --CHHHHHHHHHhccccchhhcccCCcCcCcEEEe
Q 006117 206 --EPEEIIHQISETVYPMYKAFIEPDLQTAHIKII 238 (660)
Q Consensus 206 --s~E~Vl~qy~~~v~P~~~~fIeP~k~~ADiII~ 238 (660)
+.+++..+|...+.|+. ++|+|++..||+|+.
T Consensus 316 ~~s~eea~~r~~~~d~pN~-~~I~~~~~~ad~i~~ 349 (359)
T 2ga8_A 316 VTTIAEGREKFRSNDLLNG-RDIDNHLIKVDNIVH 349 (359)
T ss_dssp CSSHHHHHHHHHHCTTTSS-HHHHHTBCCCTTEEE
T ss_pred CCCHHHHHHHHHhcCchhh-HhHhhcCCCCCEEEE
Confidence 99999999999999988 899999999999984
No 10
>1odf_A YGR205W, hypothetical 33.3 kDa protein in ADE3-Ser2 intergenic region; yeast protein, ATP binding protein; 2.25A {Saccharomyces cerevisiae} SCOP: c.37.1.6
Probab=99.78 E-value=5.6e-19 Score=184.09 Aligned_cols=176 Identities=18% Similarity=0.306 Sum_probs=133.5
Q ss_pred CCcceEEEEECCCCCcHHHHHHHHHHhCC------CceEE-EecCccccccc---ccc---------cCCCCCCCchhhH
Q 006117 63 NHGIILVGVAGPSGAGKTVFTEKVLNFMP------SIAVI-TMDNYNDSSRI---IDG---------NFDDPRLTDYDTL 123 (660)
Q Consensus 63 ge~~~IIGI~GpSGSGKSTLak~L~~lLp------~~g~I-~lDg~~~~~~~---i~~---------vfq~p~l~d~~tl 123 (660)
..++.+|||+|++|||||||++.|.+.++ ..+.+ ++|+|+..... +.+ .+..|..++...+
T Consensus 28 ~~~~~ii~I~G~sGsGKSTla~~L~~~l~~~g~~~~~~~iv~~D~f~~~~~~~~~l~~~~~~~~l~~~~g~p~a~d~~~l 107 (290)
T 1odf_A 28 NKCPLFIFFSGPQGSGKSFTSIQIYNHLMEKYGGEKSIGYASIDDFYLTHEDQLKLNEQFKNNKLLQGRGLPGTHDMKLL 107 (290)
T ss_dssp CCSCEEEEEECCTTSSHHHHHHHHHHHHHHHHGGGSCEEEEEGGGGBCCHHHHHHHHHHTTTCGGGSSSCSTTSBCHHHH
T ss_pred CCCCeEEEEECCCCCCHHHHHHHHHHHhhhcCCCCceEEEeccccccCChHHHHHHhccccccchhhhccCcchhHHHHH
Confidence 45578999999999999999999999982 14556 99998654311 111 1235888999999
Q ss_pred HHHHHhhhcC------cccccccccccc----cccccc-eeeecCCccEEEEecceeecc-c------------------
Q 006117 124 LENIRGLKEG------KAVQVPIYDFKS----SSRIGY-RTLEVPSSRIVIIEGIYALSE-K------------------ 173 (660)
Q Consensus 124 ~e~L~~L~~G------k~I~~PiyD~s~----~~rs~~-~~~~v~~a~VVIVEGilaL~d-e------------------ 173 (660)
.+.|..++.| +.+..|.|++.. ++|... ....+ +.+|+|+||++++.+ +
T Consensus 108 ~~~l~~l~~g~~t~~~~~v~~p~y~~~~sgGq~~R~~~a~~~~~-~~~IlIlEG~~~~ld~~~~~~~~~~~~~~~l~~~n 186 (290)
T 1odf_A 108 QEVLNTIFNNNEHPDQDTVVLPKYDKSQFKGEGDRCPTGQKIKL-PVDIFILEGWFLGFNPILQGIENNDLLTGDMVDVN 186 (290)
T ss_dssp HHHHHHHTC------CCEEEECCEETTHHHHTCEECSSCEEEES-SCSEEEEEESSTTCCCCCSCTTTCSSSCTTHHHHH
T ss_pred HHHHHHhhccCccccCcceeeccCccccCCccccccccccceEc-CCCEEEEeCccccCCccchhhhhcccchhhHHHHH
Confidence 9999999988 678899999998 777652 34455 789999999988653 3
Q ss_pred ---------ccCCCCEE---EEEEcChhHHHHH-HHHH--HH-HHh--CCCHHHHHHHHHhccccchhhcccCCc-----
Q 006117 174 ---------LRPLIDLR---VSVTGGVHFDLVK-RVFR--DI-QRV--GQEPEEIIHQISETVYPMYKAFIEPDL----- 230 (660)
Q Consensus 174 ---------Lr~llDlk---IfVdad~dirLiR-RI~R--Dv-~eR--Grs~E~Vl~qy~~~v~P~~~~fIeP~k----- 230 (660)
+++.+|++ |||+++.+.++.| |+.| ++ .++ |++.+++ .+|..+++|+|+.|++|..
T Consensus 187 ~~l~~y~~~l~~~~D~~d~~I~vd~~~~~~i~rWRi~re~~l~~~r~~g~s~e~v-~~~~~~~~p~y~~~~~~~~~~~~~ 265 (290)
T 1odf_A 187 AKLFFYSDLLWRNPEIKSLGIVFTTDNINNVYGWRLQQEHELISKVGKGMTDEQV-HAFVDRYMPSYKLYLNDFVRSESL 265 (290)
T ss_dssp HHHHHHHHHTTTCTTCCEEEEEEEESCTTHHHHHHHHHHHHHHHHHSCSCCHHHH-HHHHHTTHHHHHHHHHHHHHHTCS
T ss_pred HHHHHHHHHHHhhhhhhcceEEEECCCHHHHHHHHHHHHHHHHHhccCCCCHHHH-HHHHHHhcchHHHHhHHHHHhccC
Confidence 35556666 9999988887777 8888 53 346 9999997 7888999999887776532
Q ss_pred -CcCcEEEeCC
Q 006117 231 -QTAHIKIINK 240 (660)
Q Consensus 231 -~~ADiII~N~ 240 (660)
+.||+|+.-+
T Consensus 266 ~~~adlvl~~~ 276 (290)
T 1odf_A 266 GSIATLTLGID 276 (290)
T ss_dssp SSSEEEEEEEC
T ss_pred CCCCCEEEEEC
Confidence 3799998633
No 11
>1yem_A Hypothetical protein; structural genomics, southeast collaboratory for structural genomics, secsg, protein structure initiative, PSI; 2.30A {Pyrococcus furiosus} SCOP: d.63.1.2
Probab=99.77 E-value=2.5e-18 Score=167.66 Aligned_cols=144 Identities=24% Similarity=0.381 Sum_probs=122.2
Q ss_pred cHHHHHHHhcccccccc--cceeeeeecCCCCCcccccceEEEe--ecCCeEEEEEeeeecCCCceeeeeEEEEee--hh
Q 006117 261 TVDEIKAVMSKEHTETT--EETYDIYLLPPGEDPDACQSYLRMR--NRDGKYNLMFEEWVTDSPFIISPRITFEVS--VR 334 (660)
Q Consensus 261 ~~~~IravL~~~~~~~~--~~~~DIYl~pP~~d~~~tde~LRvR--~~dg~~~Ltykg~~~d~~fi~rp~~efeV~--v~ 334 (660)
..+.+++.|...+.... ..+.|+||..|+. .|||+| ..++++.||||+|. ++++.++.+.+++|+ ..
T Consensus 18 d~~~~~~~L~~lg~~~~~~~~Q~d~Yfd~p~~------~~LRIR~~~~~~~~~lT~K~p~-~g~~k~~~E~e~~v~d~~~ 90 (179)
T 1yem_A 18 KLEDFLHTLNTFNPEFVRYEEQEDVYFEVPRP------KLLRIRGVHNLKKYYLTFKEIL-DENNEEFYEVEFEIGDFEK 90 (179)
T ss_dssp CHHHHHHHHHTTCCEEEEEEEEEEEEECCCTT------EEEEEEEETTTTEEEEEEEEEC-SSSSCEEEEEEEEESCHHH
T ss_pred CHHHHHHHHHhcCCccCcceEEEEEEEcCCCC------CEEEEEEEcCCCeEEEEEeccC-CCCccceeEEEEEeCCHHH
Confidence 45788888877654332 3355999998865 899999 56999999999999 888888888888886 45
Q ss_pred hHHHHhhcCCeEEEEEEEeeeEeecCcEEEEeecccccCcceEEEEecc------HHHHHHHHHHcCCCCC-ccchhhHH
Q 006117 335 LLGGLMALGYTIATILKRSSHIFYDDRVCVKTDWLEQLNRKYVQVQGRD------RLYVKYVGEQLGLDGS-YVPRTYIE 407 (660)
Q Consensus 335 ~~~gL~~LGy~~aa~V~R~re~y~~g~~~i~lD~ve~Lg~~FveI~g~~------~~~v~~~~~~Lgl~G~-~i~kSYLE 407 (660)
+...|..|||.+.+.+.|.|..|..++++|+||+++||| .|+||+... ++.+.+++++|||..+ .+++||+|
T Consensus 91 ~~~iL~~LG~~~~~~i~K~R~~~~~~~~~i~lD~~~~lG-~f~EIE~~~~~~e~~~~~~~~ll~~LGi~~~~~~~~sY~e 169 (179)
T 1yem_A 91 AVEVFKRLGFKIQATIKKKRWVYKLNGVTLEVNRVEGIG-DFVDIEVISDSPEEAKEKIWEVAKMLGLKEEDVEPRLYLE 169 (179)
T ss_dssp HHHHHHHTTCCEEEEEEEEEEEEEETTEEEEEEEETTTE-EEEEEEEECSCHHHHHHHHHHHHHHTTCCGGGBCCSCTTT
T ss_pred HHHHHHHCCCcEEEEEEEEEEEEEECCEEEEEEecCCCC-CEEEEEEecCChHHHHHHHHHHHHHcCCChhhceehhHHH
Confidence 666788999999999999999999999999999999999 999998653 8899999999999986 89999999
Q ss_pred HHHHhh
Q 006117 408 QIQLEK 413 (660)
Q Consensus 408 li~lek 413 (660)
|+ +++
T Consensus 170 Ll-~~~ 174 (179)
T 1yem_A 170 LI-NEL 174 (179)
T ss_dssp TC----
T ss_pred HH-Hhh
Confidence 99 654
No 12
>2een_A Hypothetical protein PH1819; dimer, NPPSFA, national project on Pro structural and functional analyses; 1.65A {Pyrococcus horikoshii}
Probab=99.76 E-value=5.6e-18 Score=164.83 Aligned_cols=148 Identities=24% Similarity=0.317 Sum_probs=125.9
Q ss_pred HHHHHHhccccccc--ccceeeeeecCCCCCcccccceEEEe----ecCCeEEEEEeeeecCCCceeeeeEEEEee---h
Q 006117 263 DEIKAVMSKEHTET--TEETYDIYLLPPGEDPDACQSYLRMR----NRDGKYNLMFEEWVTDSPFIISPRITFEVS---V 333 (660)
Q Consensus 263 ~~IravL~~~~~~~--~~~~~DIYl~pP~~d~~~tde~LRvR----~~dg~~~Ltykg~~~d~~fi~rp~~efeV~---v 333 (660)
+.+...|.. .... ...+.|+||..|+.++...+.|||+| ..++++.+|||+|..+....++++.++.|+ .
T Consensus 12 ~~~~~~L~~-~~~~~~~~~q~d~YfDtp~~~L~~~~~~LRiR~~~~~~~~~~~lT~K~p~~~~~~~~r~E~e~~v~~~~~ 90 (183)
T 2een_A 12 DEIFEKVRE-TFEFMRKEIHEDIYYQHPCRDFSKTDEALRIRIKRFNGHNEVFLTYKGPKIDEKSKTRLEIEVEIQEDVD 90 (183)
T ss_dssp HHHHHHHHT-TSEEEEEEEEEEEEEECSSSCHHHHTCEEEEEEEEETTEEEEEEEEEEEECCTTSCCEEEEEEEECSCHH
T ss_pred HHHHHHHHh-cCccCccEEEEEeEEcCCCccHHhCCeEEEEeeeecCCCCEEEEEECCCcCCCCceeEEEEEEeecCCHH
Confidence 455666765 3322 23355999999999999999999999 678999999999998888888998888886 2
Q ss_pred hhHHHHhhcCCeEEEEEEEeeeEeecC-cEEEEeecccccCcceEEEEec---------cHHHHHHHHHHcCCCCCccch
Q 006117 334 RLLGGLMALGYTIATILKRSSHIFYDD-RVCVKTDWLEQLNRKYVQVQGR---------DRLYVKYVGEQLGLDGSYVPR 403 (660)
Q Consensus 334 ~~~~gL~~LGy~~aa~V~R~re~y~~g-~~~i~lD~ve~Lg~~FveI~g~---------~~~~v~~~~~~Lgl~G~~i~k 403 (660)
.+.+.|..+||.+.+.+.+.|+.|..+ ++.|++|++++|| .|+||+.. ..+.+.+++++||| ++.+++
T Consensus 91 ~~~~~L~~lgl~~~~~~~k~R~~~~~~~~~~v~lD~~~~lg-~f~EiE~e~~~~~~~~~~~~~~~~l~~~lgi-~~~~~~ 168 (183)
T 2een_A 91 KYFELLDRLGFKEVLKVVKTREKYYVEKGVTITLDEVEGLG-KFIEIETLVKEKDEIPEAVEKLEKILRELGV-EKFERR 168 (183)
T ss_dssp HHHHHHHHTTCEEEEEEEEEEEEEEEETTEEEEEEEETTTE-EEEEEEEECSSGGGHHHHHHHHHHHHHHHTC-CCBCCS
T ss_pred HHHHHHHHCCCeEEEEEEEEEEEEEeCCCEEEEEEeecCCe-eEEEEEEecCCcccHHHHHHHHHHHHHHcCC-CCceec
Confidence 356667789999999999999999999 9999999999999 89999753 46889999999999 899999
Q ss_pred hhHHHHHHhhh
Q 006117 404 TYIEQIQLEKL 414 (660)
Q Consensus 404 SYLEli~lek~ 414 (660)
||+||+ +++.
T Consensus 169 sY~ell-~~~~ 178 (183)
T 2een_A 169 SYLELL-LEKR 178 (183)
T ss_dssp CHHHHH-HHTC
T ss_pred cHHHHH-Hhhh
Confidence 999999 6653
No 13
>3ghx_A Adenylate cyclase CYAB; CYTH domain, antiparallel barrel, product complex, cyclic AMP, lyase; HET: CMP; 1.60A {Yersinia pestis} PDB: 3n0y_A* 3n0z_A* 3n10_A* 2fjt_A
Probab=99.76 E-value=4.4e-18 Score=165.93 Aligned_cols=141 Identities=16% Similarity=0.267 Sum_probs=120.0
Q ss_pred HHHHHHHhcccccc---cccceeeeeecCCCCCcccccceEEEeecC--CeEEEEEeeeecCCCceeeeeEEEEee--hh
Q 006117 262 VDEIKAVMSKEHTE---TTEETYDIYLLPPGEDPDACQSYLRMRNRD--GKYNLMFEEWVTDSPFIISPRITFEVS--VR 334 (660)
Q Consensus 262 ~~~IravL~~~~~~---~~~~~~DIYl~pP~~d~~~tde~LRvR~~d--g~~~Ltykg~~~d~~fi~rp~~efeV~--v~ 334 (660)
.+.+++.|...+.. ....+.|+||..|..++...+.|||+|..+ |.+.+|||||+.+.. .+++|. ..
T Consensus 20 ~~~~~~~L~~~g~~~~~~~~~q~d~yfd~p~~~l~~~~~~lRiR~~~~~~~~~~t~Kgp~~~~~------~e~~v~d~~~ 93 (179)
T 3ghx_A 20 LTTLHEQLVAQKATAFTLNNHEKDIYLDANGQDLAKQQISMVLREMNPSGIRLWIVKGPGAERC------EASNIEDVSK 93 (179)
T ss_dssp HHHHHHHHHHTTCEEEEEEEEEEEEEEECTTCTTGGGTCEEEEEEEETTCCEEEEEECSSSSBE------EEEECSCHHH
T ss_pred HHHHHHHHHhcCCccccCcceEEEEEEeCCCccHHHCCcEEEEEEecCCCcEEEEEecCCCCcE------EEEEcCCHHH
Confidence 46788888765543 233556999999999999999999999863 789999999998742 355665 46
Q ss_pred hHHHHhhcCCeEEEEEEEeeeEeecCcEEEEeecccccCcceEEEEec---------cHHHHHHHHHHcCCCC-Cccchh
Q 006117 335 LLGGLMALGYTIATILKRSSHIFYDDRVCVKTDWLEQLNRKYVQVQGR---------DRLYVKYVGEQLGLDG-SYVPRT 404 (660)
Q Consensus 335 ~~~gL~~LGy~~aa~V~R~re~y~~g~~~i~lD~ve~Lg~~FveI~g~---------~~~~v~~~~~~Lgl~G-~~i~kS 404 (660)
+...|..|||.+++.+.|.|+.|..++++|+||+++||| .|+||+.. .++.+.+++.+|||+. +.+++|
T Consensus 94 ~~~iL~~LG~~~~~~v~K~R~~y~~~~~~i~LD~v~glG-~f~EIE~~~~d~~~~~~~~~~i~~l~~~LGi~~~~~~~~s 172 (179)
T 3ghx_A 94 VQSMLATLGYHPAFTIEKQRSIYFVGKFHITVDHLTGLG-DFAEIAIMTDDATELDKLKAECRDFANTFGLQVDQQEPRS 172 (179)
T ss_dssp HHHHHHHTTCEEEEEEEEEEEEEEETTEEEEEEEETTTE-EEEEEEEEESCGGGHHHHHHHHHHHHHHHTCCGGGBCCSC
T ss_pred HHHHHHHCCCcEEEEEEEEEEEEEECCEEEEEEccCCCc-cEEEEEEEcCChhhHHHHHHHHHHHHHHcCcChhhceehh
Confidence 666778999999999999999999999999999999999 99999754 5688999999999998 579999
Q ss_pred hHHHH
Q 006117 405 YIEQI 409 (660)
Q Consensus 405 YLEli 409 (660)
|+||+
T Consensus 173 Y~eLl 177 (179)
T 3ghx_A 173 YRQLL 177 (179)
T ss_dssp HHHHH
T ss_pred HHHHh
Confidence 99998
No 14
>3tui_C Methionine import ATP-binding protein METN; ABC-transporter, type I ABC type importer, methionine uptake transporter, membrane protein; HET: ADP; 2.90A {Escherichia coli} PDB: 3tuj_C 3tuz_C* 3dhw_C
Probab=99.73 E-value=1.2e-19 Score=194.92 Aligned_cols=174 Identities=19% Similarity=0.206 Sum_probs=126.1
Q ss_pred hhhcccCCCceeeeeccceeeeecCceEEEEecceeeccCCcceEEEEECCCCCcHHHHHHHHHHhC-CCceEEEecCcc
Q 006117 24 QLVKKKDSDRYEIVPIEDTLSFEKGFFIVIRACQLLAQKNHGIILVGVAGPSGAGKTVFTEKVLNFM-PSIAVITMDNYN 102 (660)
Q Consensus 24 ~l~~~~~~~~~ei~~~~~~ls~~~g~~~vL~~Isl~i~~ge~~~IIGI~GpSGSGKSTLak~L~~lL-p~~g~I~lDg~~ 102 (660)
+.....+..|+++..+.+.|....+...+|++|||.+++|+ ++||+||||||||||+++|++++ |+.|.|.++|..
T Consensus 15 ~~~~~~~~~mi~v~~ls~~y~~~~~~~~aL~~vsl~i~~Ge---i~~IiGpnGaGKSTLlr~i~GL~~p~~G~I~i~G~~ 91 (366)
T 3tui_C 15 GHIDDDDKHMIKLSNITKVFHQGTRTIQALNNVSLHVPAGQ---IYGVIGASGAGKSTLIRCVNLLERPTEGSVLVDGQE 91 (366)
T ss_dssp --------CCEEEEEEEEEEECSSSEEEEEEEEEEEECTTC---EEEEECCTTSSHHHHHHHHHTSSCCSEEEEEETTEE
T ss_pred CCCCCCCCceEEEEeEEEEeCCCCCCeEEEEeeEEEEcCCC---EEEEEcCCCchHHHHHHHHhcCCCCCceEEEECCEE
Confidence 33444444566666666555433345789999999999999 99999999999999999999998 899999999975
Q ss_pred cc----------cccccccCCCCCCCchhhHHHHHHhhhc--Cc--------------cccc-ccccccccccccceeee
Q 006117 103 DS----------SRIIDGNFDDPRLTDYDTLLENIRGLKE--GK--------------AVQV-PIYDFKSSSRIGYRTLE 155 (660)
Q Consensus 103 ~~----------~~~i~~vfq~p~l~d~~tl~e~L~~L~~--Gk--------------~I~~-PiyD~s~~~rs~~~~~~ 155 (660)
.. .+.++++||++.+++..++.+++..... +. .+.. ...+...++.++++.++
T Consensus 92 i~~~~~~~~~~~r~~Ig~v~Q~~~l~~~~TV~env~~~~~~~~~~~~~~~~~v~~lL~~vgL~~~~~~~~~~LSGGqkQR 171 (366)
T 3tui_C 92 LTTLSESELTKARRQIGMIFQHFNLLSSRTVFGNVALPLELDNTPKDEVKRRVTELLSLVGLGDKHDSYPSNLSGGQKQR 171 (366)
T ss_dssp CSSCCHHHHHHHHTTEEEECSSCCCCTTSCHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHTCGGGTTCCTTTSCHHHHHH
T ss_pred CCcCCHHHHHHHhCcEEEEeCCCccCCCCCHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCchHhcCChhhCCHHHHHH
Confidence 42 1458999999999999999999864321 10 0111 12344556677888889
Q ss_pred cCCccEEEEecceeecccccCCCCEEEEEEcChhHHHHHHHHHHHHH-hCCCH
Q 006117 156 VPSSRIVIIEGIYALSEKLRPLIDLRVSVTGGVHFDLVKRVFRDIQR-VGQEP 207 (660)
Q Consensus 156 v~~a~VVIVEGilaL~deLr~llDlkIfVdad~dirLiRRI~RDv~e-RGrs~ 207 (660)
+..++.++.++.+++.||+...+|. .....+..+.+++.+ .|.+.
T Consensus 172 VaIArAL~~~P~lLLlDEPTs~LD~-------~~~~~i~~lL~~l~~~~g~Ti 217 (366)
T 3tui_C 172 VAIARALASNPKVLLCDQATSALDP-------ATTRSILELLKDINRRLGLTI 217 (366)
T ss_dssp HHHHHHTTTCCSEEEEESTTTTSCH-------HHHHHHHHHHHHHHHHSCCEE
T ss_pred HHHHHHHhcCCCEEEEECCCccCCH-------HHHHHHHHHHHHHHHhCCCEE
Confidence 9999999999999999999999997 344455555555543 36553
No 15
>1rz3_A Hypothetical protein rbstp0775; MCSG, structural genomics, PSI, protein structure initiative; 1.90A {Geobacillus stearothermophilus} SCOP: c.37.1.6
Probab=99.72 E-value=2.5e-18 Score=168.09 Aligned_cols=167 Identities=18% Similarity=0.299 Sum_probs=108.7
Q ss_pred cceEEEEECCCCCcHHHHHHHHHHhC-CCceE---EEecCcccccccc-cccCC-----CCCCCchhhHHHHH-HhhhcC
Q 006117 65 GIILVGVAGPSGAGKTVFTEKVLNFM-PSIAV---ITMDNYNDSSRII-DGNFD-----DPRLTDYDTLLENI-RGLKEG 133 (660)
Q Consensus 65 ~~~IIGI~GpSGSGKSTLak~L~~lL-p~~g~---I~lDg~~~~~~~i-~~vfq-----~p~l~d~~tl~e~L-~~L~~G 133 (660)
++.+|||+|++||||||+++.|++.+ +..+. +..|.+....... ..... .+..+|...+.+.+ ..+..+
T Consensus 21 ~~~~i~i~G~~GsGKstl~~~l~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~d~~~l~~~v~~~l~~~ 100 (201)
T 1rz3_A 21 GRLVLGIDGLSRSGKTTLANQLSQTLREQGISVCVFHMDDHIVERAKRYHTGNEEWFEYYYLQWDVEWLTHQLFRQLKAS 100 (201)
T ss_dssp SSEEEEEEECTTSSHHHHHHHHHHHHHHTTCCEEEEEGGGGCCCHHHHSSSSSCHHHHHHHTSSCHHHHHHHTGGGTTTC
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHhhcCCeEEEeccCcccCCHHHHHhcCCCCccCCCccccCHHHHHHHHHHHHhcC
Confidence 34599999999999999999999987 32332 3345543321100 00000 02456667776665 556677
Q ss_pred cccccccccccccccccceeeecCCccEEEEecceeecccccCCCCEEEEEEcChhHHHHHHHHHHHHHhCCCHHHHHHH
Q 006117 134 KAVQVPIYDFKSSSRIGYRTLEVPSSRIVIIEGIYALSEKLRPLIDLRVSVTGGVHFDLVKRVFRDIQRVGQEPEEIIHQ 213 (660)
Q Consensus 134 k~I~~PiyD~s~~~rs~~~~~~v~~a~VVIVEGilaL~deLr~llDlkIfVdad~dirLiRRI~RDv~eRGrs~E~Vl~q 213 (660)
+.+..|.|++..+.... ........+++|+||++++.+.+.+.+|.+|||++|.++++.|.+.|+ +++..+
T Consensus 101 ~~~~~~~~~~~~~~~~~-~~~~~~~~~~vIveg~~l~~~~~~~~~d~~i~v~~~~~~~~~R~~~R~--------~~~~~~ 171 (201)
T 1rz3_A 101 HQLTLPFYDHETDTHSK-RTVYLSDSDMIMIEGVFLQRKEWRPFFDFVVYLDCPREIRFARENDQV--------KQNIQK 171 (201)
T ss_dssp SEEEEEEEETTTTEEEE-EEEECTTCSEEEEEETTTTSTTTGGGCSEEEEECCC----------------------CHHH
T ss_pred CccccCceeccCCCCCC-ceEEeCCCcEEEEechhhccHHHHhhcCEEEEEeCCHHHHHHHHhcCC--------HHHHHH
Confidence 78889999987543322 233456678999999999988888999999999999999988888776 566778
Q ss_pred HHhccccchhhcccCC--cCcCcEEEeCC
Q 006117 214 ISETVYPMYKAFIEPD--LQTAHIKIINK 240 (660)
Q Consensus 214 y~~~v~P~~~~fIeP~--k~~ADiII~N~ 240 (660)
|...++|+++.|++|. +..||+||+|+
T Consensus 172 ~~~~~~~~~~~y~~~~~~~~~AD~vI~N~ 200 (201)
T 1rz3_A 172 FINRYWKAEDYYLETEEPIKRADVVFDMT 200 (201)
T ss_dssp HHHHHHHHHHHHHHHHCHHHHCSEEEC--
T ss_pred HHhheeHHHHHHhCCCCcHhhCcEEecCC
Confidence 8777889999998765 68999999876
No 16
>2dc4_A PH1012 protein, 165AA long hypothetical protein; dimer, X-RAY diffraction, structural genomics, NPPSFA; 1.65A {Pyrococcus horikoshii}
Probab=99.67 E-value=6.8e-16 Score=147.58 Aligned_cols=140 Identities=24% Similarity=0.382 Sum_probs=116.9
Q ss_pred HHHHHHHhccccccc--ccceeeeeecCCCCCcccccceEEEe--ecCCeEEEEEeeeecCCCceeeeeEEEEee--hhh
Q 006117 262 VDEIKAVMSKEHTET--TEETYDIYLLPPGEDPDACQSYLRMR--NRDGKYNLMFEEWVTDSPFIISPRITFEVS--VRL 335 (660)
Q Consensus 262 ~~~IravL~~~~~~~--~~~~~DIYl~pP~~d~~~tde~LRvR--~~dg~~~Ltykg~~~d~~fi~rp~~efeV~--v~~ 335 (660)
.+.++..+...+... ...+.|+||..|.. .+||+| ..|+++.||||+|. +++..++++.+++|. ..+
T Consensus 11 ~~~~~~~l~~~~~~~~~~~~q~d~Yfdt~~~------~~LRiR~~~~~~~~~lT~K~~~-~g~~~~~~E~e~~i~~~~~~ 83 (165)
T 2dc4_A 11 FEDIKRKIEGLGAKFFGIEEQEDVYFELPSP------KLLRVRKINNTGKSYITYKEIL-DKRNEEFYELEFEVQDPEGA 83 (165)
T ss_dssp HHHHHHHHHHHTCEEEEEEEEEEEEECCSTT------EEEEEEEETTTTEEEEEEEEEC-SSSSCEEEEEEEEBSCHHHH
T ss_pred HHHHHHHHHhcCCCcCcceeEEEEEEcCCCC------CEEEEEEEcCCCEEEEEEeCcC-CCCceeeeEEEEEcCCHHHH
Confidence 356666665533222 23456999988755 899999 56999999999999 888888999888885 345
Q ss_pred HHHHhhcCCeEEEEEEEeeeEeecCcEEEEeecccccCcceEEEEecc------HHHHHHHHHHcCCCCC-ccchhhHHH
Q 006117 336 LGGLMALGYTIATILKRSSHIFYDDRVCVKTDWLEQLNRKYVQVQGRD------RLYVKYVGEQLGLDGS-YVPRTYIEQ 408 (660)
Q Consensus 336 ~~gL~~LGy~~aa~V~R~re~y~~g~~~i~lD~ve~Lg~~FveI~g~~------~~~v~~~~~~Lgl~G~-~i~kSYLEl 408 (660)
...|..|||.+...+.|.|..|..+++.|++|.++|+| .|+||+-.. ++.+.+++++|||..+ .+++||+||
T Consensus 84 ~~~L~~lg~~~~~~~~k~R~~~~~~~~~i~lD~~~~~g-~~~EiE~~~~~~~~~~~~~~~l~~~lgi~~~~~~~~sY~el 162 (165)
T 2dc4_A 84 IELFKRLGFKVQGVVKKRRWIYKLNNVTFELNRVEKAG-DFLDIEVITSNPEEGKKIIWDVARRLGLKEEDVEPKLYIEL 162 (165)
T ss_dssp HHHHHHTTCCEEEEEEEEEEEEEETTEEEEEEEETTTE-EEEEEEECCSCHHHHHHHHHHHHHHTTCCGGGBCCSCHHHH
T ss_pred HHHHHHcCCcEEEEEEEEEEEEEECCEEEEEEecCCCc-cEEEEEEEcCCHHHHHHHHHHHHHHcCCCcccceehhHHHH
Confidence 55567899999999999999999999999999999999 999998653 8899999999999986 899999999
Q ss_pred H
Q 006117 409 I 409 (660)
Q Consensus 409 i 409 (660)
+
T Consensus 163 l 163 (165)
T 2dc4_A 163 I 163 (165)
T ss_dssp C
T ss_pred h
Confidence 8
No 17
>3n10_A Adenylate cyclase 2; CYTH domain, antiparallel barrel, product complex, cyclic AM; HET: CMP; 1.60A {Yersinia pestis} PDB: 3n0z_A* 3n0y_A* 2fjt_A
Probab=99.67 E-value=6.6e-16 Score=149.67 Aligned_cols=140 Identities=16% Similarity=0.255 Sum_probs=116.4
Q ss_pred HHHHHHhcccccc---cccceeeeeecCCCCCcccccceEEEeec--CCeEEEEEeeeecCCCceeeeeEEEEee--hhh
Q 006117 263 DEIKAVMSKEHTE---TTEETYDIYLLPPGEDPDACQSYLRMRNR--DGKYNLMFEEWVTDSPFIISPRITFEVS--VRL 335 (660)
Q Consensus 263 ~~IravL~~~~~~---~~~~~~DIYl~pP~~d~~~tde~LRvR~~--dg~~~Ltykg~~~d~~fi~rp~~efeV~--v~~ 335 (660)
+.+.+.|...... ....+.|+||..|+.++...+.|||+|.. ++..+|+||||.. +++.+++|. ..+
T Consensus 21 ~~~~~~L~~~~~~~~~~~~~q~d~Yfd~p~~~l~~~~~~lRiR~~~~~~~~~lt~kg~~~------~~e~e~~v~~~~~~ 94 (179)
T 3n10_A 21 TTLHEQLVAQKATAFTLNNHEKDIYLDANGQDLAKQQISMVLREMNPSGIRLWIVKGPGA------ERCEASNIEDVSKV 94 (179)
T ss_dssp HHHHHHHHHTTCEEEEEEEEEEEEEEECTTCTTGGGTCEEEEEEEETTCCEEEEEECSSS------SBEEEEECSCHHHH
T ss_pred HHHHHHHHhcCCccccceEEEEEEEEeCCChhHHhCCceEEEEecCCCceEEEEEcCCcc------ccceeeccCCHHHH
Confidence 5666777554332 22334599999999999999999999975 5788999999854 456666666 566
Q ss_pred HHHHhhcCCeEEEEEEEeeeEeecCcEEEEeecccccCcceEEEEec---------cHHHHHHHHHHcCCCC-Cccchhh
Q 006117 336 LGGLMALGYTIATILKRSSHIFYDDRVCVKTDWLEQLNRKYVQVQGR---------DRLYVKYVGEQLGLDG-SYVPRTY 405 (660)
Q Consensus 336 ~~gL~~LGy~~aa~V~R~re~y~~g~~~i~lD~ve~Lg~~FveI~g~---------~~~~v~~~~~~Lgl~G-~~i~kSY 405 (660)
...|..+||.+++.+.|.|+.|..+++.|++|+|++|| +|+||+.. .++.+.+++++|||.. +.+++||
T Consensus 95 ~~~l~~lg~~~~~~~~k~R~~~~~~~~~v~lD~v~~lG-~f~EiE~e~~~~~~~~~~~~~~~~l~~~LGl~~~~~~~~sY 173 (179)
T 3n10_A 95 QSMLATLGYHPAFTIEKQRSIYFVGKFHITVDHLTGLG-DFAEIAIMTDDATELDKLKAECRDFANTFGLQVDQQEPRSY 173 (179)
T ss_dssp HHHHHHTTCEEEEEEEEEEEEEEETTEEEEEEEETTTE-EEEEEEEEESCGGGHHHHHHHHHHHHHHHTCCGGGBCCSCH
T ss_pred HHHHHhCCCeEEEEEEEEEEEEEECCEEEEEEeccCCC-cEEEEEEEeCCCccHHHHHHHHHHHHHHcCcChhhcceecH
Confidence 67789999999999999999999999999999999999 99999753 4678999999999986 5699999
Q ss_pred HHHH
Q 006117 406 IEQI 409 (660)
Q Consensus 406 LEli 409 (660)
+||+
T Consensus 174 ~eLL 177 (179)
T 3n10_A 174 RQLL 177 (179)
T ss_dssp HHHH
T ss_pred HHHh
Confidence 9998
No 18
>3gfo_A Cobalt import ATP-binding protein CBIO 1; structural genomics, cell membrane, cobalt transport, hydrolase, ION transport; 2.30A {Clostridium perfringens atcc 13124}
Probab=99.62 E-value=2.8e-16 Score=162.71 Aligned_cols=140 Identities=13% Similarity=0.134 Sum_probs=108.8
Q ss_pred eccceeeeecCc-eEEEEecceeeccCCcceEEEEECCCCCcHHHHHHHHHHhC-CCceEEEecCcccc---------cc
Q 006117 38 PIEDTLSFEKGF-FIVIRACQLLAQKNHGIILVGVAGPSGAGKTVFTEKVLNFM-PSIAVITMDNYNDS---------SR 106 (660)
Q Consensus 38 ~~~~~ls~~~g~-~~vL~~Isl~i~~ge~~~IIGI~GpSGSGKSTLak~L~~lL-p~~g~I~lDg~~~~---------~~ 106 (660)
...+++++.++. ..+|++|||.+++|+ ++||+||||||||||+++|++++ |+.|.|.++|.... .+
T Consensus 8 l~i~~ls~~y~~~~~~L~~isl~i~~Ge---~~~iiGpnGsGKSTLl~~l~Gl~~p~~G~I~~~G~~i~~~~~~~~~~~~ 84 (275)
T 3gfo_A 8 LKVEELNYNYSDGTHALKGINMNIKRGE---VTAILGGNGVGKSTLFQNFNGILKPSSGRILFDNKPIDYSRKGIMKLRE 84 (275)
T ss_dssp EEEEEEEEECTTSCEEEEEEEEEEETTS---EEEEECCTTSSHHHHHHHHTTSSCCSEEEEEETTEECCCSHHHHHHHHH
T ss_pred EEEEEEEEEECCCCeEEEeeEEEEcCCC---EEEEECCCCCCHHHHHHHHHcCCCCCCeEEEECCEECCcccccHHHHhC
Confidence 344666676653 569999999999999 99999999999999999999998 89999999997542 13
Q ss_pred cccccCCCCC-CCchhhHHHHHHhhhc--Cc--------------cccc-ccccccccccccceeeecCCccEEEEecce
Q 006117 107 IIDGNFDDPR-LTDYDTLLENIRGLKE--GK--------------AVQV-PIYDFKSSSRIGYRTLEVPSSRIVIIEGIY 168 (660)
Q Consensus 107 ~i~~vfq~p~-l~d~~tl~e~L~~L~~--Gk--------------~I~~-PiyD~s~~~rs~~~~~~v~~a~VVIVEGil 168 (660)
.++++||+|. .+...++.+++..... +. .+.. ...+...+..++++.+++..+++++.++.+
T Consensus 85 ~ig~v~Q~~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~L~~~~~~~~~~LSgGqkQRv~iAraL~~~P~l 164 (275)
T 3gfo_A 85 SIGIVFQDPDNQLFSASVYQDVSFGAVNMKLPEDEIRKRVDNALKRTGIEHLKDKPTHCLSFGQKKRVAIAGVLVMEPKV 164 (275)
T ss_dssp SEEEECSSGGGTCCSSBHHHHHHHHHHTSCCCHHHHHHHHHHHHHHTTCGGGTTSBGGGSCHHHHHHHHHHHHHTTCCSE
T ss_pred cEEEEEcCcccccccCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCchhhcCCcccCCHHHHHHHHHHHHHHcCCCE
Confidence 5889999984 3446789998864321 10 0111 123444566777888889999999999999
Q ss_pred eecccccCCCCE
Q 006117 169 ALSEKLRPLIDL 180 (660)
Q Consensus 169 aL~deLr~llDl 180 (660)
++.||+...+|.
T Consensus 165 LlLDEPts~LD~ 176 (275)
T 3gfo_A 165 LILDEPTAGLDP 176 (275)
T ss_dssp EEEECTTTTCCH
T ss_pred EEEECccccCCH
Confidence 999999999997
No 19
>3fvq_A Fe(3+) IONS import ATP-binding protein FBPC; nucleotide binding domain, ABC motor domain, ferric iron TRA ATP-binding, cell inner membrane; HET: ATP; 1.90A {Neisseria gonorrhoeae}
Probab=99.62 E-value=2.7e-16 Score=168.62 Aligned_cols=139 Identities=16% Similarity=0.073 Sum_probs=114.8
Q ss_pred ccceeeeecCceEEEEecceeeccCCcceEEEEECCCCCcHHHHHHHHHHhC-CCceEEEecCccc----c-----cccc
Q 006117 39 IEDTLSFEKGFFIVIRACQLLAQKNHGIILVGVAGPSGAGKTVFTEKVLNFM-PSIAVITMDNYND----S-----SRII 108 (660)
Q Consensus 39 ~~~~ls~~~g~~~vL~~Isl~i~~ge~~~IIGI~GpSGSGKSTLak~L~~lL-p~~g~I~lDg~~~----~-----~~~i 108 (660)
..+++++.++...+|++|||.+++|+ +++|+||||||||||+++|++++ |+.|.|.++|... . .+.+
T Consensus 6 ~i~~ls~~y~~~~~L~~vsl~i~~Ge---~~~llGpsGsGKSTLLr~iaGl~~p~~G~I~i~G~~i~~~~~~~~~~~r~i 82 (359)
T 3fvq_A 6 HIGHLSKSFQNTPVLNDISLSLDPGE---ILFIIGASGCGKTTLLRCLAGFEQPDSGEISLSGKTIFSKNTNLPVRERRL 82 (359)
T ss_dssp EEEEEEEEETTEEEEEEEEEEECTTC---EEEEEESTTSSHHHHHHHHHTSSCCSEEEEEETTEEEESSSCBCCGGGSCC
T ss_pred EEEeEEEEECCEEEEEeeEEEEcCCC---EEEEECCCCchHHHHHHHHhcCCCCCCcEEEECCEECcccccccchhhCCE
Confidence 34566677788899999999999999 99999999999999999999998 8999999999643 1 2468
Q ss_pred cccCCCCCCCchhhHHHHHHhhhcCc----------------cccc-ccccccccccccceeeecCCccEEEEecceeec
Q 006117 109 DGNFDDPRLTDYDTLLENIRGLKEGK----------------AVQV-PIYDFKSSSRIGYRTLEVPSSRIVIIEGIYALS 171 (660)
Q Consensus 109 ~~vfq~p~l~d~~tl~e~L~~L~~Gk----------------~I~~-PiyD~s~~~rs~~~~~~v~~a~VVIVEGilaL~ 171 (660)
+++||++.+|+.+++.+|+....... .+.. ...+...++.++++.+++..++.++.++.+++.
T Consensus 83 g~vfQ~~~l~p~ltV~eni~~~l~~~~~~~~~~~~~v~~~l~~~gL~~~~~r~~~~LSGGq~QRValArAL~~~P~lLLL 162 (359)
T 3fvq_A 83 GYLVQEGVLFPHLTVYRNIAYGLGNGKGRTAQERQRIEAMLELTGISELAGRYPHELSGGQQQRAALARALAPDPELILL 162 (359)
T ss_dssp EEECTTCCCCTTSCHHHHHHTTSTTSSCCSHHHHHHHHHHHHHHTCGGGTTSCGGGSCHHHHHHHHHHHHHTTCCSEEEE
T ss_pred EEEeCCCcCCCCCCHHHHHHHHHHHcCCChHHHHHHHHHHHHHcCCchHhcCChhhCCHHHHHHHHHHHHHHcCCCEEEE
Confidence 99999999999999999997632110 0111 223555667788899999999999999999999
Q ss_pred ccccCCCCE
Q 006117 172 EKLRPLIDL 180 (660)
Q Consensus 172 deLr~llDl 180 (660)
||+...+|.
T Consensus 163 DEPts~LD~ 171 (359)
T 3fvq_A 163 DEPFSALDE 171 (359)
T ss_dssp ESTTTTSCH
T ss_pred eCCcccCCH
Confidence 999999997
No 20
>3rlf_A Maltose/maltodextrin import ATP-binding protein M; integral membrane protein, ATPase, ABC transporter, membrane transmembrane; HET: UMQ MAL PGV ANP; 2.20A {Escherichia coli} PDB: 1q1e_A 1q12_A* 2awo_A* 3fh6_A 3puv_A* 3puw_A* 3pux_A* 3puy_A* 3puz_A* 3pv0_A* 2awn_A* 2r6g_A* 1q1b_A
Probab=99.60 E-value=5.1e-16 Score=167.68 Aligned_cols=138 Identities=18% Similarity=0.175 Sum_probs=114.4
Q ss_pred cceeeeecCceEEEEecceeeccCCcceEEEEECCCCCcHHHHHHHHHHhC-CCceEEEecCcccc-----cccccccCC
Q 006117 40 EDTLSFEKGFFIVIRACQLLAQKNHGIILVGVAGPSGAGKTVFTEKVLNFM-PSIAVITMDNYNDS-----SRIIDGNFD 113 (660)
Q Consensus 40 ~~~ls~~~g~~~vL~~Isl~i~~ge~~~IIGI~GpSGSGKSTLak~L~~lL-p~~g~I~lDg~~~~-----~~~i~~vfq 113 (660)
.+++++.++...+|++|||.+++|+ +++|+||||||||||+++|++++ |+.|.|.++|.... .+.++++||
T Consensus 6 ~~~l~~~yg~~~~L~~vsl~i~~Ge---~~~llGpsGsGKSTLLr~iaGl~~p~~G~I~i~G~~~~~~~~~~r~ig~VfQ 82 (381)
T 3rlf_A 6 LQNVTKAWGEVVVSKDINLDIHEGE---FVVFVGPSGCGKSTLLRMIAGLETITSGDLFIGEKRMNDTPPAERGVGMVFQ 82 (381)
T ss_dssp EEEEEEEETTEEEEEEEEEEECTTC---EEEEECCTTSSHHHHHHHHHTSSCCSEEEEEETTEECTTCCGGGSCEEEECT
T ss_pred EEeEEEEECCEEEEeeeEEEECCCC---EEEEEcCCCchHHHHHHHHHcCCCCCCeEEEECCEECCCCCHHHCCEEEEec
Confidence 4566677788899999999999999 99999999999999999999999 89999999997432 256899999
Q ss_pred CCCCCchhhHHHHHHhhhc--Cc--------------cccc-ccccccccccccceeeecCCccEEEEecceeecccccC
Q 006117 114 DPRLTDYDTLLENIRGLKE--GK--------------AVQV-PIYDFKSSSRIGYRTLEVPSSRIVIIEGIYALSEKLRP 176 (660)
Q Consensus 114 ~p~l~d~~tl~e~L~~L~~--Gk--------------~I~~-PiyD~s~~~rs~~~~~~v~~a~VVIVEGilaL~deLr~ 176 (660)
++.+|+.+++.+|+..... +. .+.. ...+...++.++++.+++..++.++.++.+++.||+..
T Consensus 83 ~~~l~p~ltV~eni~~~~~~~~~~~~~~~~~v~~~l~~~~L~~~~~r~p~~LSGGqrQRVaiArAL~~~P~lLLLDEPts 162 (381)
T 3rlf_A 83 SYALYPHLSVAENMSFGLKLAGAKKEVINQRVNQVAEVLQLAHLLDRKPKALSGGQRQRVAIGRTLVAEPSVFLLDEPLS 162 (381)
T ss_dssp TCCCCTTSCHHHHHTHHHHHTTCCHHHHHHHHHHHHHHTTCGGGTTCCGGGSCHHHHHHHHHHHHHHHCCSEEEEESTTT
T ss_pred CCcCCCCCCHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCchhhcCChhHCCHHHHHHHHHHHHHHcCCCEEEEECCCc
Confidence 9999999999999864221 10 0111 23455566778889999999999999999999999999
Q ss_pred CCCE
Q 006117 177 LIDL 180 (660)
Q Consensus 177 llDl 180 (660)
.+|.
T Consensus 163 ~LD~ 166 (381)
T 3rlf_A 163 NLDA 166 (381)
T ss_dssp TSCH
T ss_pred CCCH
Confidence 9997
No 21
>3tif_A Uncharacterized ABC transporter ATP-binding prote; nucleotide-binding domain, ABC transporter ATPase; HET: ADP; 1.80A {Methanocaldococcus jannaschii dsm 2661ORGANISM_TAXID} PDB: 1l2t_A* 1f3o_A*
Probab=99.60 E-value=5.5e-16 Score=156.53 Aligned_cols=148 Identities=17% Similarity=0.220 Sum_probs=113.3
Q ss_pred eEEEEecceeeccCCcceEEEEECCCCCcHHHHHHHHHHhC-CCceEEEecCccccc-----------ccccccCCCCCC
Q 006117 50 FIVIRACQLLAQKNHGIILVGVAGPSGAGKTVFTEKVLNFM-PSIAVITMDNYNDSS-----------RIIDGNFDDPRL 117 (660)
Q Consensus 50 ~~vL~~Isl~i~~ge~~~IIGI~GpSGSGKSTLak~L~~lL-p~~g~I~lDg~~~~~-----------~~i~~vfq~p~l 117 (660)
..+|+++||.+++|+ ++||+||||||||||+++|++++ |+.|.|.++|..... +.++++||++.+
T Consensus 18 ~~~L~~isl~i~~Ge---~~~iiG~nGsGKSTLl~~l~Gl~~p~~G~I~~~g~~~~~~~~~~~~~~~~~~i~~v~Q~~~l 94 (235)
T 3tif_A 18 IYALKNVNLNIKEGE---FVSIMGPSGSGKSTMLNIIGCLDKPTEGEVYIDNIKTNDLDDDELTKIRRDKIGFVFQQFNL 94 (235)
T ss_dssp EEEEEEEEEEECTTC---EEEEECSTTSSHHHHHHHHTTSSCCSEEEEEETTEECTTCCHHHHHHHHHHHEEEECTTCCC
T ss_pred eeeEEeeeEEEcCCC---EEEEECCCCCcHHHHHHHHhcCCCCCceEEEECCEEcccCCHHHHHHHhhccEEEEecCCcc
Confidence 579999999999999 99999999999999999999998 899999999964321 248899999999
Q ss_pred CchhhHHHHHHhhhc-----Cc--------------cccccc-c-cccccccccceeeecCCccEEEEecceeecccccC
Q 006117 118 TDYDTLLENIRGLKE-----GK--------------AVQVPI-Y-DFKSSSRIGYRTLEVPSSRIVIIEGIYALSEKLRP 176 (660)
Q Consensus 118 ~d~~tl~e~L~~L~~-----Gk--------------~I~~Pi-y-D~s~~~rs~~~~~~v~~a~VVIVEGilaL~deLr~ 176 (660)
++..++.+++..... +. .+.... + +...++.++++.+++..++.++.++.+++.||+..
T Consensus 95 ~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgGq~QRv~iAral~~~p~llllDEPts 174 (235)
T 3tif_A 95 IPLLTALENVELPLIFKYRGAMSGEERRKRALECLKMAELEERFANHKPNQLSGGQQQRVAIARALANNPPIILADQPTW 174 (235)
T ss_dssp CTTSCHHHHHHHHHHTCSSSCCCHHHHHHHHHHHHHHTTCCGGGTTCCGGGSCHHHHHHHHHHHHHTTCCSEEEEESTTT
T ss_pred CCCCcHHHHHHHHHHhhhccCCCHHHHHHHHHHHHHHCCCChhhhhCChhhCCHHHHHHHHHHHHHHcCCCEEEEeCCcc
Confidence 999999999864210 10 011111 1 44456677888888999999999999999999999
Q ss_pred CCCEEEEEEcChhHHHHHHHHHHHHH-hCCCH
Q 006117 177 LIDLRVSVTGGVHFDLVKRVFRDIQR-VGQEP 207 (660)
Q Consensus 177 llDlkIfVdad~dirLiRRI~RDv~e-RGrs~ 207 (660)
.+|. .....+..+.+++.+ .|.+.
T Consensus 175 ~LD~-------~~~~~i~~~l~~l~~~~g~tv 199 (235)
T 3tif_A 175 ALDS-------KTGEKIMQLLKKLNEEDGKTV 199 (235)
T ss_dssp TSCH-------HHHHHHHHHHHHHHHHHCCEE
T ss_pred cCCH-------HHHHHHHHHHHHHHHHcCCEE
Confidence 9997 344444445555433 35543
No 22
>1g6h_A High-affinity branched-chain amino acid transport ATP-binding protein; beta-core domain; HET: ADP; 1.60A {Methanocaldococcus jannaschii} SCOP: c.37.1.12 PDB: 1gaj_A 1g9x_A*
Probab=99.60 E-value=1.6e-15 Score=154.96 Aligned_cols=140 Identities=16% Similarity=0.199 Sum_probs=110.6
Q ss_pred eccceeeeecCceEEEEecceeeccCCcceEEEEECCCCCcHHHHHHHHHHhC-CCceEEEecCccccc--------ccc
Q 006117 38 PIEDTLSFEKGFFIVIRACQLLAQKNHGIILVGVAGPSGAGKTVFTEKVLNFM-PSIAVITMDNYNDSS--------RII 108 (660)
Q Consensus 38 ~~~~~ls~~~g~~~vL~~Isl~i~~ge~~~IIGI~GpSGSGKSTLak~L~~lL-p~~g~I~lDg~~~~~--------~~i 108 (660)
...+++++.++...+|+++||.+++|+ ++||+||||||||||+++|++++ |+.|.|.++|..... +.+
T Consensus 8 l~i~~l~~~y~~~~vl~~vsl~i~~Ge---~~~liG~nGsGKSTLlk~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~~i 84 (257)
T 1g6h_A 8 LRTENIVKYFGEFKALDGVSISVNKGD---VTLIIGPNGSGKSTLINVITGFLKADEGRVYFENKDITNKEPAELYHYGI 84 (257)
T ss_dssp EEEEEEEEEETTEEEEEEECCEEETTC---EEEEECSTTSSHHHHHHHHTTSSCCSEEEEEETTEECTTCCHHHHHHHTE
T ss_pred EEEeeeEEEECCEeeEeeeEEEEeCCC---EEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEECCCCCHHHHHhCCE
Confidence 334666677777889999999999999 99999999999999999999998 789999999975321 247
Q ss_pred cccCCCCCCCchhhHHHHHHhhhc----C-----------cc--------------ccc-ccccccccccccceeeecCC
Q 006117 109 DGNFDDPRLTDYDTLLENIRGLKE----G-----------KA--------------VQV-PIYDFKSSSRIGYRTLEVPS 158 (660)
Q Consensus 109 ~~vfq~p~l~d~~tl~e~L~~L~~----G-----------k~--------------I~~-PiyD~s~~~rs~~~~~~v~~ 158 (660)
+++||++.+++..++.+++..... + .. +.. ...+...+..++++.+++..
T Consensus 85 ~~v~q~~~l~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgGqkQrv~i 164 (257)
T 1g6h_A 85 VRTFQTPQPLKEMTVLENLLIGEICPGESPLNSLFYKKWIPKEEEMVEKAFKILEFLKLSHLYDRKAGELSGGQMKLVEI 164 (257)
T ss_dssp EECCCCCGGGGGSBHHHHHHGGGTSTTSCHHHHHHHCSSCCCCHHHHHHHHHHHHHTTCGGGTTSBGGGSCHHHHHHHHH
T ss_pred EEEccCCccCCCCcHHHHHHHHHhhhccCcccccccccccCCHHHHHHHHHHHHHHcCCchhhCCCchhCCHHHHHHHHH
Confidence 899999999988999999875321 1 00 000 11233344566778888888
Q ss_pred ccEEEEecceeecccccCCCCE
Q 006117 159 SRIVIIEGIYALSEKLRPLIDL 180 (660)
Q Consensus 159 a~VVIVEGilaL~deLr~llDl 180 (660)
++.++.++.+++.||+...+|.
T Consensus 165 AraL~~~p~lllLDEPts~LD~ 186 (257)
T 1g6h_A 165 GRALMTNPKMIVMDEPIAGVAP 186 (257)
T ss_dssp HHHHHTCCSEEEEESTTTTCCH
T ss_pred HHHHHcCCCEEEEeCCccCCCH
Confidence 8999999999999999999997
No 23
>2pcj_A ABC transporter, lipoprotein-releasing system ATP-binding protein; structural genomics; 1.70A {Aquifex aeolicus} PDB: 2pcl_A
Probab=99.60 E-value=6.5e-16 Score=154.79 Aligned_cols=139 Identities=18% Similarity=0.147 Sum_probs=110.3
Q ss_pred ccceeeeecCceEEEEecceeeccCCcceEEEEECCCCCcHHHHHHHHHHhC-CCceEEEecCccccc-----------c
Q 006117 39 IEDTLSFEKGFFIVIRACQLLAQKNHGIILVGVAGPSGAGKTVFTEKVLNFM-PSIAVITMDNYNDSS-----------R 106 (660)
Q Consensus 39 ~~~~ls~~~g~~~vL~~Isl~i~~ge~~~IIGI~GpSGSGKSTLak~L~~lL-p~~g~I~lDg~~~~~-----------~ 106 (660)
..+++++.++...+|+++||.+++|+ ++||+||||||||||+++|++++ |+.|.|.++|..... +
T Consensus 6 ~~~~l~~~y~~~~~l~~vsl~i~~Ge---~~~iiG~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~~~~ 82 (224)
T 2pcj_A 6 RAENIKKVIRGYEILKGISLSVKKGE---FVSIIGASGSGKSTLLYILGLLDAPTEGKVFLEGKEVDYTNEKELSLLRNR 82 (224)
T ss_dssp EEEEEEEEETTEEEEEEEEEEEETTC---EEEEEECTTSCHHHHHHHHTTSSCCSEEEEEETTEECCSSCHHHHHHHHHH
T ss_pred EEEeEEEEECCEeeEeeeEEEEcCCC---EEEEECCCCCCHHHHHHHHhcCCCCCceEEEECCEECCCCCHHHHHHHHhC
Confidence 34566677777889999999999999 99999999999999999999998 789999999965321 3
Q ss_pred cccccCCCCCCCchhhHHHHHHhhhc--Cc--------------cccc-ccccccccccccceeeecCCccEEEEeccee
Q 006117 107 IIDGNFDDPRLTDYDTLLENIRGLKE--GK--------------AVQV-PIYDFKSSSRIGYRTLEVPSSRIVIIEGIYA 169 (660)
Q Consensus 107 ~i~~vfq~p~l~d~~tl~e~L~~L~~--Gk--------------~I~~-PiyD~s~~~rs~~~~~~v~~a~VVIVEGila 169 (660)
.++++||++.+++..++.+++..... +. .+.. +..+...+..++++.+++..++.++.++.++
T Consensus 83 ~i~~v~q~~~l~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgGq~qrv~laral~~~p~ll 162 (224)
T 2pcj_A 83 KLGFVFQFHYLIPELTALENVIVPMLKMGKPKKEAKERGEYLLSELGLGDKLSRKPYELSGGEQQRVAIARALANEPILL 162 (224)
T ss_dssp HEEEECSSCCCCTTSCHHHHHHHHHHHTTCCHHHHHHHHHHHHHHTTCTTCTTCCGGGSCHHHHHHHHHHHHTTTCCSEE
T ss_pred cEEEEecCcccCCCCCHHHHHHhHHHHcCCCHHHHHHHHHHHHHHcCCchhhhCChhhCCHHHHHHHHHHHHHHcCCCEE
Confidence 47899999999998899999864211 10 0111 1223344566777888888889999999999
Q ss_pred ecccccCCCCE
Q 006117 170 LSEKLRPLIDL 180 (660)
Q Consensus 170 L~deLr~llDl 180 (660)
+.||+...+|.
T Consensus 163 lLDEPt~~LD~ 173 (224)
T 2pcj_A 163 FADEPTGNLDS 173 (224)
T ss_dssp EEESTTTTCCH
T ss_pred EEeCCCCCCCH
Confidence 99999999997
No 24
>1b0u_A Histidine permease; ABC transporter, transport protein; HET: ATP; 1.50A {Salmonella typhimurium} SCOP: c.37.1.12
Probab=99.59 E-value=6.8e-16 Score=158.36 Aligned_cols=160 Identities=20% Similarity=0.179 Sum_probs=122.3
Q ss_pred eccceeeeecCceEEEEecceeeccCCcceEEEEECCCCCcHHHHHHHHHHhC-CCceEEEecCcccc------------
Q 006117 38 PIEDTLSFEKGFFIVIRACQLLAQKNHGIILVGVAGPSGAGKTVFTEKVLNFM-PSIAVITMDNYNDS------------ 104 (660)
Q Consensus 38 ~~~~~ls~~~g~~~vL~~Isl~i~~ge~~~IIGI~GpSGSGKSTLak~L~~lL-p~~g~I~lDg~~~~------------ 104 (660)
...+++++.++...+|+++||.+++|+ ++||+||||||||||+++|++++ |+.|.|.++|....
T Consensus 7 l~i~~l~~~y~~~~vl~~vsl~i~~Ge---~~~liG~nGsGKSTLlk~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~~~ 83 (262)
T 1b0u_A 7 LHVIDLHKRYGGHEVLKGVSLQARAGD---VISIIGSSGSGKSTFLRCINFLEKPSEGAIIVNGQNINLVRDKDGQLKVA 83 (262)
T ss_dssp EEEEEEEEEETTEEEEEEEEEEECTTC---EEEEECCTTSSHHHHHHHHTTSSCCSEEEEEETTEECCEEECTTSSEEES
T ss_pred EEEeeEEEEECCEEEEEeeEEEEcCCC---EEEEECCCCCCHHHHHHHHhcCCCCCCcEEEECCEEcccccccccccccc
Confidence 334566677777889999999999999 99999999999999999999998 78999999986532
Q ss_pred --------cccccccCCCCCCCchhhHHHHHHhhh---cCc--------------ccccc-c-ccccccccccceeeecC
Q 006117 105 --------SRIIDGNFDDPRLTDYDTLLENIRGLK---EGK--------------AVQVP-I-YDFKSSSRIGYRTLEVP 157 (660)
Q Consensus 105 --------~~~i~~vfq~p~l~d~~tl~e~L~~L~---~Gk--------------~I~~P-i-yD~s~~~rs~~~~~~v~ 157 (660)
.+.++++||++.+++..++.+++.... .+. .+... . .+...+..++++.+++.
T Consensus 84 ~~~~~~~~~~~i~~v~Q~~~l~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~~~l~~~~L~~~~~~~~~~~LSgGq~qRv~ 163 (262)
T 1b0u_A 84 DKNQLRLLRTRLTMVFQHFNLWSHMTVLENVMEAPIQVLGLSKHDARERALKYLAKVGIDERAQGKYPVHLSGGQQQRVS 163 (262)
T ss_dssp CHHHHHHHHHHEEEECSSCCCCTTSCHHHHHHHHHHHTTCCCHHHHHHHHHHHHHHTTCCHHHHTSCGGGSCHHHHHHHH
T ss_pred ChhhHHHHhcceEEEecCcccCCCCcHHHHHHhhHHHhcCCCHHHHHHHHHHHHHHcCCCchhhcCCcccCCHHHHHHHH
Confidence 134789999999999899999986521 110 01111 1 24445567778888899
Q ss_pred CccEEEEecceeecccccCCCCEEEEEEcChhHHHHHHHHHHHHHhCCCH
Q 006117 158 SSRIVIIEGIYALSEKLRPLIDLRVSVTGGVHFDLVKRVFRDIQRVGQEP 207 (660)
Q Consensus 158 ~a~VVIVEGilaL~deLr~llDlkIfVdad~dirLiRRI~RDv~eRGrs~ 207 (660)
.++.++.++.+++.||+...+|. .....+..+.+++.+.|.+.
T Consensus 164 lAraL~~~p~lllLDEPts~LD~-------~~~~~~~~~l~~l~~~g~tv 206 (262)
T 1b0u_A 164 IARALAMEPDVLLFDEPTSALDP-------ELVGEVLRIMQQLAEEGKTM 206 (262)
T ss_dssp HHHHHHTCCSEEEEESTTTTSCH-------HHHHHHHHHHHHHHHTTCCE
T ss_pred HHHHHhcCCCEEEEeCCCccCCH-------HHHHHHHHHHHHHHhCCCEE
Confidence 99999999999999999999997 34445555556655456554
No 25
>1ji0_A ABC transporter; ATP binding protein, structural genomics, PSI, protein structure initiative, midwest center for structural genomics, MCSG; HET: ATP; 2.00A {Thermotoga maritima} SCOP: c.37.1.12
Probab=99.59 E-value=1.6e-15 Score=153.49 Aligned_cols=160 Identities=14% Similarity=0.117 Sum_probs=120.3
Q ss_pred eccceeeeecCceEEEEecceeeccCCcceEEEEECCCCCcHHHHHHHHHHhC-CCceEEEecCccccc--------ccc
Q 006117 38 PIEDTLSFEKGFFIVIRACQLLAQKNHGIILVGVAGPSGAGKTVFTEKVLNFM-PSIAVITMDNYNDSS--------RII 108 (660)
Q Consensus 38 ~~~~~ls~~~g~~~vL~~Isl~i~~ge~~~IIGI~GpSGSGKSTLak~L~~lL-p~~g~I~lDg~~~~~--------~~i 108 (660)
...+++++.++...+|+++||.+++|+ ++||+||||||||||+++|++++ |+.|.|.++|..... +.+
T Consensus 7 l~~~~l~~~y~~~~vl~~vsl~i~~Ge---~~~l~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~~i 83 (240)
T 1ji0_A 7 LEVQSLHVYYGAIHAIKGIDLKVPRGQ---IVTLIGANGAGKTTTLSAIAGLVRAQKGKIIFNGQDITNKPAHVINRMGI 83 (240)
T ss_dssp EEEEEEEEEETTEEEEEEEEEEEETTC---EEEEECSTTSSHHHHHHHHTTSSCCSEEEEEETTEECTTCCHHHHHHTTE
T ss_pred EEEEeEEEEECCeeEEeeeEEEEcCCC---EEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEECCCCCHHHHHhCCE
Confidence 344666677777889999999999999 99999999999999999999998 899999999975421 248
Q ss_pred cccCCCCCCCchhhHHHHHHhhh-cC---cc-------c-----cc-ccccccccccccceeeecCCccEEEEecceeec
Q 006117 109 DGNFDDPRLTDYDTLLENIRGLK-EG---KA-------V-----QV-PIYDFKSSSRIGYRTLEVPSSRIVIIEGIYALS 171 (660)
Q Consensus 109 ~~vfq~p~l~d~~tl~e~L~~L~-~G---k~-------I-----~~-PiyD~s~~~rs~~~~~~v~~a~VVIVEGilaL~ 171 (660)
+++||++.+++..++.+++.... .. .. + .. ...+...+..++++.+++..++.++.++.+++.
T Consensus 84 ~~v~q~~~l~~~ltv~enl~~~~~~~~~~~~~~~~~~~~l~~~~~l~~~~~~~~~~LSgGq~qrv~lAraL~~~p~lllL 163 (240)
T 1ji0_A 84 ALVPEGRRIFPELTVYENLMMGAYNRKDKEGIKRDLEWIFSLFPRLKERLKQLGGTLSGGEQQMLAIGRALMSRPKLLMM 163 (240)
T ss_dssp EEECSSCCCCTTSBHHHHHHGGGTTCCCSSHHHHHHHHHHHHCHHHHTTTTSBSSSSCHHHHHHHHHHHHHTTCCSEEEE
T ss_pred EEEecCCccCCCCcHHHHHHHhhhcCCCHHHHHHHHHHHHHHcccHhhHhcCChhhCCHHHHHHHHHHHHHHcCCCEEEE
Confidence 89999999999899999987532 11 00 0 01 112333445667788888888999999999999
Q ss_pred ccccCCCCEEEEEEcChhHHHHHHHHHHHHHhCCCH
Q 006117 172 EKLRPLIDLRVSVTGGVHFDLVKRVFRDIQRVGQEP 207 (660)
Q Consensus 172 deLr~llDlkIfVdad~dirLiRRI~RDv~eRGrs~ 207 (660)
||+...+|. .....+..+.+++.+.|.+.
T Consensus 164 DEPts~LD~-------~~~~~l~~~l~~~~~~g~tv 192 (240)
T 1ji0_A 164 DEPSLGLAP-------ILVSEVFEVIQKINQEGTTI 192 (240)
T ss_dssp ECTTTTCCH-------HHHHHHHHHHHHHHHTTCCE
T ss_pred cCCcccCCH-------HHHHHHHHHHHHHHHCCCEE
Confidence 999999997 34444455555554445543
No 26
>2olj_A Amino acid ABC transporter; ABC domain, ATPase, hydrolase; HET: ADP; 2.05A {Geobacillus stearothermophilus} PDB: 2olk_A* 2ouk_A 2q0h_A* 3c4j_A* 3c41_J*
Probab=99.58 E-value=1.2e-15 Score=156.96 Aligned_cols=159 Identities=20% Similarity=0.152 Sum_probs=120.9
Q ss_pred eccceeeeecCceEEEEecceeeccCCcceEEEEECCCCCcHHHHHHHHHHhC-CCceEEEecCcccc---------ccc
Q 006117 38 PIEDTLSFEKGFFIVIRACQLLAQKNHGIILVGVAGPSGAGKTVFTEKVLNFM-PSIAVITMDNYNDS---------SRI 107 (660)
Q Consensus 38 ~~~~~ls~~~g~~~vL~~Isl~i~~ge~~~IIGI~GpSGSGKSTLak~L~~lL-p~~g~I~lDg~~~~---------~~~ 107 (660)
...+++++.++...+|+++||.+++|+ ++||+||||||||||+++|++++ |+.|.|.++|.... .+.
T Consensus 25 l~i~~l~~~y~~~~vL~~vsl~i~~Ge---i~~liG~NGsGKSTLlk~l~Gl~~p~~G~I~~~g~~i~~~~~~~~~~~~~ 101 (263)
T 2olj_A 25 IDVHQLKKSFGSLEVLKGINVHIREGE---VVVVIGPSGSGKSTFLRCLNLLEDFDEGEIIIDGINLKAKDTNLNKVREE 101 (263)
T ss_dssp EEEEEEEEEETTEEEEEEEEEEECTTC---EEEEECCTTSSHHHHHHHHTTSSCCSEEEEEETTEESSSTTCCHHHHHHH
T ss_pred EEEEeEEEEECCEEEEEeeEEEEcCCC---EEEEEcCCCCcHHHHHHHHHcCCCCCCcEEEECCEECCCccccHHHHhCc
Confidence 445667777777889999999999999 99999999999999999999998 79999999997542 134
Q ss_pred ccccCCCCCCCchhhHHHHHHhhh---cCc-------c-------ccc-ccccccccccccceeeecCCccEEEEeccee
Q 006117 108 IDGNFDDPRLTDYDTLLENIRGLK---EGK-------A-------VQV-PIYDFKSSSRIGYRTLEVPSSRIVIIEGIYA 169 (660)
Q Consensus 108 i~~vfq~p~l~d~~tl~e~L~~L~---~Gk-------~-------I~~-PiyD~s~~~rs~~~~~~v~~a~VVIVEGila 169 (660)
++++||++.+++..++.+++.... .+. . +.. ...+...++.++++.+++..++.++.++.++
T Consensus 102 i~~v~Q~~~l~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~l~~~~L~~~~~~~~~~LSgGqkQRv~lAraL~~~p~ll 181 (263)
T 2olj_A 102 VGMVFQRFNLFPHMTVLNNITLAPMKVRKWPREKAEAKAMELLDKVGLKDKAHAYPDSLSGGQAQRVAIARALAMEPKIM 181 (263)
T ss_dssp EEEECSSCCCCTTSCHHHHHHHHHHHTSCCCHHHHHHHHHHHHHHTTCGGGTTSCGGGSCHHHHHHHHHHHHHTTCCSEE
T ss_pred EEEEeCCCcCCCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHCCCchHhcCChhhCCHHHHHHHHHHHHHHCCCCEE
Confidence 789999999999889999986521 110 0 111 1123344556777888888899999999999
Q ss_pred ecccccCCCCEEEEEEcChhHHHHHHHHHHHHHhCCC
Q 006117 170 LSEKLRPLIDLRVSVTGGVHFDLVKRVFRDIQRVGQE 206 (660)
Q Consensus 170 L~deLr~llDlkIfVdad~dirLiRRI~RDv~eRGrs 206 (660)
+.||+...+|. .....+..+.+++.+.|.+
T Consensus 182 lLDEPts~LD~-------~~~~~~~~~l~~l~~~g~t 211 (263)
T 2olj_A 182 LFDEPTSALDP-------EMVGEVLSVMKQLANEGMT 211 (263)
T ss_dssp EEESTTTTSCH-------HHHHHHHHHHHHHHHTTCE
T ss_pred EEeCCcccCCH-------HHHHHHHHHHHHHHhCCCE
Confidence 99999999997 3444445555555444544
No 27
>2aca_A Putative adenylate cyclase; NESG, VPR19, Q87NV8, structural genomics, PSI, protein structure initiative; 2.25A {Vibrio parahaemolyticus} SCOP: d.63.1.2
Probab=99.58 E-value=4.4e-15 Score=145.59 Aligned_cols=143 Identities=15% Similarity=0.172 Sum_probs=117.0
Q ss_pred HHHHHHHhccccc-c--cccceeeeeecCCCCCcccccceEEEeecC--CeEEEEEeeeecCCCceeeeeEEEEee--hh
Q 006117 262 VDEIKAVMSKEHT-E--TTEETYDIYLLPPGEDPDACQSYLRMRNRD--GKYNLMFEEWVTDSPFIISPRITFEVS--VR 334 (660)
Q Consensus 262 ~~~IravL~~~~~-~--~~~~~~DIYl~pP~~d~~~tde~LRvR~~d--g~~~Ltykg~~~d~~fi~rp~~efeV~--v~ 334 (660)
.+.++..|..... . ....+.|+||..|+.++...+.|||+|..+ +...+|+|||..++.. +++|. ..
T Consensus 22 ~~~~~~~L~~~~~~~~~~~~~q~d~YfDtp~~~L~~~~~aLRiR~~~~~~~~~~t~Kgp~~~~~~------e~~v~d~~~ 95 (189)
T 2aca_A 22 HDAFLNMVKQIEHEVMFENNQESDWFYDTPQRTLTQQGKSLVLREIQPAGIKLWIVKGPEADRCE------ATNITKLDS 95 (189)
T ss_dssp HHHHHHHHHTSCCEEEEEEEEEEEEEEECTTCHHHHTTCEEEEEEEETTTEEEEEEECSSTTBEE------EEEBSCHHH
T ss_pred HHHHHHHHHhcCCcccCcceEEEEEEEeCCCcchhhCCeEEEEEEecCCCcEEEEEcCCCcCceE------EEecCCHHH
Confidence 4677788876554 2 233455999999999999999999999753 5789999999887532 45554 24
Q ss_pred hHHHHhhcCCeEEEEEEEeeeEeecCcEEEEeecccccCcceEEEEec---------cHHHHHHHHHHcCCCCC-ccchh
Q 006117 335 LLGGLMALGYTIATILKRSSHIFYDDRVCVKTDWLEQLNRKYVQVQGR---------DRLYVKYVGEQLGLDGS-YVPRT 404 (660)
Q Consensus 335 ~~~gL~~LGy~~aa~V~R~re~y~~g~~~i~lD~ve~Lg~~FveI~g~---------~~~~v~~~~~~Lgl~G~-~i~kS 404 (660)
+.+.|.++||.+++.+.|.|+.|..+++.|++|.+++|| .|+||+-. ..+.+.+++++|||..+ .+++|
T Consensus 96 ~~~~L~~lgl~~~~~~~k~R~~~~~~~~~v~lD~~~~lg-~f~EiE~e~~~~~~~~~~~~~~~~l~~~lgi~~~~~~~~s 174 (189)
T 2aca_A 96 AQSMLENMGYEVIQCSKKIRSIFFVGEFHITLDFLDGFG-HFAEFAIMTDDETALARYRERLVALAQQFHLSEADREHRS 174 (189)
T ss_dssp HHHHHHHTTCEEEEEEEEEEEEEEETTEEEEEEEETTTE-EEEEEEEEESCSGGGTTHHHHHHHHHHHTTCCGGGBCCSC
T ss_pred HHHHHHHcCCcEEEEEEEEEEEEEECCEEEEEEcccCCe-eEEEEEEEcCCccchHHHHHHHHHHHHHcCcCccccchhh
Confidence 556677899999999999999999999999999999999 99999632 36899999999999864 69999
Q ss_pred hHHHHHHh
Q 006117 405 YIEQIQLE 412 (660)
Q Consensus 405 YLEli~le 412 (660)
|+||+ ++
T Consensus 175 Y~~ll-~~ 181 (189)
T 2aca_A 175 YKEIL-SA 181 (189)
T ss_dssp TTTSS-CC
T ss_pred HHHHH-Hh
Confidence 99998 44
No 28
>2yyz_A Sugar ABC transporter, ATP-binding protein; sugar transport, alpha and beta proteins (A/B) TM0421, structural genomics, NPPSFA; 2.11A {Thermotoga maritima}
Probab=99.57 E-value=2.2e-15 Score=161.67 Aligned_cols=138 Identities=20% Similarity=0.184 Sum_probs=112.9
Q ss_pred cceeeeecCceEEEEecceeeccCCcceEEEEECCCCCcHHHHHHHHHHhC-CCceEEEecCcccc-----cccccccCC
Q 006117 40 EDTLSFEKGFFIVIRACQLLAQKNHGIILVGVAGPSGAGKTVFTEKVLNFM-PSIAVITMDNYNDS-----SRIIDGNFD 113 (660)
Q Consensus 40 ~~~ls~~~g~~~vL~~Isl~i~~ge~~~IIGI~GpSGSGKSTLak~L~~lL-p~~g~I~lDg~~~~-----~~~i~~vfq 113 (660)
.+++++.++...+|++++|.+++|+ +++|+||||||||||+++|++++ |+.|.|.++|.... .+.++++||
T Consensus 6 ~~~l~~~y~~~~vl~~vsl~i~~Ge---~~~llGpnGsGKSTLLr~iaGl~~p~~G~I~i~g~~i~~~~~~~r~ig~v~Q 82 (359)
T 2yyz_A 6 VVNLKKYFGKVKAVDGVSFEVKDGE---FVALLGPSGCGKTTTLLMLAGIYKPTSGEIYFDDVLVNDIPPKYREVGMVFQ 82 (359)
T ss_dssp EEEEEEEETTEEEEEEEEEEECTTC---EEEEECSTTSSHHHHHHHHHTSSCCSEEEEEETTEECTTSCGGGTTEEEECS
T ss_pred EEEEEEEECCEEEEeeeEEEEcCCC---EEEEEcCCCchHHHHHHHHHCCCCCCccEEEECCEECCCCChhhCcEEEEec
Confidence 3556666677889999999999999 99999999999999999999998 89999999996532 256899999
Q ss_pred CCCCCchhhHHHHHHhhhcCc---------c-------ccc-ccccccccccccceeeecCCccEEEEecceeecccccC
Q 006117 114 DPRLTDYDTLLENIRGLKEGK---------A-------VQV-PIYDFKSSSRIGYRTLEVPSSRIVIIEGIYALSEKLRP 176 (660)
Q Consensus 114 ~p~l~d~~tl~e~L~~L~~Gk---------~-------I~~-PiyD~s~~~rs~~~~~~v~~a~VVIVEGilaL~deLr~ 176 (660)
++.+|+.+++.+|+....... . +.. ...+...++.++++.+++..++.++.++.+++.||+..
T Consensus 83 ~~~l~~~ltv~eni~~~~~~~~~~~~~~~~~v~~~l~~~~L~~~~~r~~~~LSgGq~QRvalArAL~~~P~lLLLDEP~s 162 (359)
T 2yyz_A 83 NYALYPHMTVFENIAFPLRARRISKDEVEKRVVEIARKLLIDNLLDRKPTQLSGGQQQRVALARALVKQPKVLLFDEPLS 162 (359)
T ss_dssp SCCCCTTSCHHHHHHGGGSSSCSHHHHTTHHHHHHHHHTTCGGGTTSCGGGSCHHHHHHHHHHHHHTTCCSEEEEESTTT
T ss_pred CcccCCCCCHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCchHhcCChhhCCHHHHHHHHHHHHHHcCCCEEEEECCcc
Confidence 999999999999997632110 0 111 12344456677888889999999999999999999999
Q ss_pred CCCE
Q 006117 177 LIDL 180 (660)
Q Consensus 177 llDl 180 (660)
.+|.
T Consensus 163 ~LD~ 166 (359)
T 2yyz_A 163 NLDA 166 (359)
T ss_dssp TSCH
T ss_pred cCCH
Confidence 9997
No 29
>1v43_A Sugar-binding transport ATP-binding protein; ATPase, active transport, sugar uptake and regulation, transport protein; 2.20A {Pyrococcus horikoshii} SCOP: b.40.6.3 b.40.6.3 c.37.1.12 PDB: 1vci_A*
Probab=99.56 E-value=2.9e-15 Score=161.40 Aligned_cols=139 Identities=19% Similarity=0.204 Sum_probs=108.1
Q ss_pred ccceeeeecCceEEEEecceeeccCCcceEEEEECCCCCcHHHHHHHHHHhC-CCceEEEecCcccc-----cccccccC
Q 006117 39 IEDTLSFEKGFFIVIRACQLLAQKNHGIILVGVAGPSGAGKTVFTEKVLNFM-PSIAVITMDNYNDS-----SRIIDGNF 112 (660)
Q Consensus 39 ~~~~ls~~~g~~~vL~~Isl~i~~ge~~~IIGI~GpSGSGKSTLak~L~~lL-p~~g~I~lDg~~~~-----~~~i~~vf 112 (660)
..+++++.++.+.+|++++|.+++|+ +++|+||||||||||+++|++++ |+.|.|.++|.... .+.++++|
T Consensus 13 ~~~~l~~~y~~~~vl~~vsl~i~~Ge---~~~llGpnGsGKSTLLr~iaGl~~p~~G~I~i~g~~i~~~~~~~r~ig~v~ 89 (372)
T 1v43_A 13 KLENLTKRFGNFTAVNKLNLTIKDGE---FLVLLGPSGCGKTTTLRMIAGLEEPTEGRIYFGDRDVTYLPPKDRNISMVF 89 (372)
T ss_dssp EEEEEEEEETTEEEEEEEEEEECTTC---EEEEECCTTSSHHHHHHHHHTSSCCSEEEEEETTEECTTSCGGGGTEEEEE
T ss_pred EEEEEEEEECCEEEEeeeEEEECCCC---EEEEECCCCChHHHHHHHHHcCCCCCceEEEECCEECCCCChhhCcEEEEe
Confidence 34566667777889999999999999 99999999999999999999998 89999999996432 25689999
Q ss_pred CCCCCCchhhHHHHHHhhhc--Cc--------------cccc-ccccccccccccceeeecCCccEEEEecceeeccccc
Q 006117 113 DDPRLTDYDTLLENIRGLKE--GK--------------AVQV-PIYDFKSSSRIGYRTLEVPSSRIVIIEGIYALSEKLR 175 (660)
Q Consensus 113 q~p~l~d~~tl~e~L~~L~~--Gk--------------~I~~-PiyD~s~~~rs~~~~~~v~~a~VVIVEGilaL~deLr 175 (660)
|++.+|+.+++.+|+..... +. .+.. ...+...++.++++.+++..++.++.++.+++.||+.
T Consensus 90 Q~~~l~~~ltv~eni~~~~~~~~~~~~~~~~~v~~~l~~~~L~~~~~r~~~~LSGGq~QRvalArAL~~~P~lLLLDEP~ 169 (372)
T 1v43_A 90 QSYAVWPHMTVYENIAFPLKIKKFPKDEIDKRVRWAAELLQIEELLNRYPAQLSGGQRQRVAVARAIVVEPDVLLMDEPL 169 (372)
T ss_dssp C------CCCHHHHHHTTCC--CCCHHHHHHHHHHHHHHTTCGGGTTSCTTTCCSSCHHHHHHHHHHTTCCSEEEEESTT
T ss_pred cCcccCCCCCHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCChhHhcCChhhCCHHHHHHHHHHHHHhcCCCEEEEcCCC
Confidence 99999999999999975321 10 0111 1234455677888999999999999999999999999
Q ss_pred CCCCE
Q 006117 176 PLIDL 180 (660)
Q Consensus 176 ~llDl 180 (660)
..+|.
T Consensus 170 s~LD~ 174 (372)
T 1v43_A 170 SNLDA 174 (372)
T ss_dssp TTSCH
T ss_pred ccCCH
Confidence 99997
No 30
>1g29_1 MALK, maltose transport protein MALK; ATPase, active transport, maltose uptake and regulation, sugar binding protein; 1.90A {Thermococcus litoralis} SCOP: b.40.6.3 b.40.6.3 c.37.1.12 PDB: 2d62_A
Probab=99.56 E-value=3.1e-15 Score=161.16 Aligned_cols=138 Identities=19% Similarity=0.136 Sum_probs=112.3
Q ss_pred cceeeeecCceEEEEecceeeccCCcceEEEEECCCCCcHHHHHHHHHHhC-CCceEEEecCcccc-----------ccc
Q 006117 40 EDTLSFEKGFFIVIRACQLLAQKNHGIILVGVAGPSGAGKTVFTEKVLNFM-PSIAVITMDNYNDS-----------SRI 107 (660)
Q Consensus 40 ~~~ls~~~g~~~vL~~Isl~i~~ge~~~IIGI~GpSGSGKSTLak~L~~lL-p~~g~I~lDg~~~~-----------~~~ 107 (660)
.+++++.++...+|++++|.+++|+ +++|+||||||||||+++|++++ |+.|.|.++|.... .+.
T Consensus 6 ~~~l~~~y~~~~vl~~vsl~i~~Ge---~~~llGpnGsGKSTLLr~iaGl~~p~~G~I~i~g~~~~~~~~~~~~~~~~r~ 82 (372)
T 1g29_1 6 LVDVWKVFGEVTAVREMSLEVKDGE---FMILLGPSGCGKTTTLRMIAGLEEPSRGQIYIGDKLVADPEKGIFVPPKDRD 82 (372)
T ss_dssp EEEEEEEETTEEEEEEEEEEEETTC---EEEEECSTTSSHHHHHHHHHTSSCCSEEEEEETTEEEEEGGGTEECCGGGSS
T ss_pred EEeEEEEECCEEEEeeeEEEEcCCC---EEEEECCCCcHHHHHHHHHHcCCCCCccEEEECCEECccccccccCCHhHCC
Confidence 4556666677889999999999999 99999999999999999999998 89999999986421 245
Q ss_pred ccccCCCCCCCchhhHHHHHHhhhc--Cc--------------cccc-ccccccccccccceeeecCCccEEEEecceee
Q 006117 108 IDGNFDDPRLTDYDTLLENIRGLKE--GK--------------AVQV-PIYDFKSSSRIGYRTLEVPSSRIVIIEGIYAL 170 (660)
Q Consensus 108 i~~vfq~p~l~d~~tl~e~L~~L~~--Gk--------------~I~~-PiyD~s~~~rs~~~~~~v~~a~VVIVEGilaL 170 (660)
++++||++.+|+.+++.+|+..... +. .+.. ...+...++.++++.+++..++.++.++.+++
T Consensus 83 ig~v~Q~~~l~~~ltv~eni~~~~~~~~~~~~~~~~~v~~~l~~~~L~~~~~r~~~~LSGGq~QRvalArAL~~~P~lLL 162 (372)
T 1g29_1 83 IAMVFQSYALYPHMTVYDNIAFPLKLRKVPRQEIDQRVREVAELLGLTELLNRKPRELSGGQRQRVALGRAIVRKPQVFL 162 (372)
T ss_dssp EEEECSCCCCCTTSCHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHTCGGGTTCCGGGSCHHHHHHHHHHHHHHTCCSEEE
T ss_pred EEEEeCCCccCCCCCHHHHHHHHHHHcCCCHHHHHHHHHHHHHHCCCchHhcCCcccCCHHHHHHHHHHHHHhcCCCEEE
Confidence 8999999999999999999865221 10 0111 12344456677888889999999999999999
Q ss_pred cccccCCCCE
Q 006117 171 SEKLRPLIDL 180 (660)
Q Consensus 171 ~deLr~llDl 180 (660)
.||+...+|.
T Consensus 163 LDEP~s~LD~ 172 (372)
T 1g29_1 163 MDEPLSNLDA 172 (372)
T ss_dssp EECTTTTSCH
T ss_pred ECCCCccCCH
Confidence 9999999997
No 31
>2ihy_A ABC transporter, ATP-binding protein; ATPase, ABC cassette, hydrolase; HET: MSE; 1.90A {Staphylococcus aureus}
Probab=99.55 E-value=2.6e-15 Score=155.63 Aligned_cols=140 Identities=10% Similarity=-0.027 Sum_probs=106.9
Q ss_pred eccceeeeecCceEEEEecceeeccCCcceEEEEECCCCCcHHHHHHHHHHhC-CCceEEEecCcccc---------ccc
Q 006117 38 PIEDTLSFEKGFFIVIRACQLLAQKNHGIILVGVAGPSGAGKTVFTEKVLNFM-PSIAVITMDNYNDS---------SRI 107 (660)
Q Consensus 38 ~~~~~ls~~~g~~~vL~~Isl~i~~ge~~~IIGI~GpSGSGKSTLak~L~~lL-p~~g~I~lDg~~~~---------~~~ 107 (660)
...+++++.++...+|++++|.+++|+ ++||+||||||||||+++|++++ |+.|.|.++|.... .+.
T Consensus 22 l~~~~l~~~y~~~~vL~~isl~i~~Ge---~~~liG~NGsGKSTLlk~l~Gl~~p~~G~I~~~g~~~~~~~~~~~~~~~~ 98 (279)
T 2ihy_A 22 IQLDQIGRMKQGKTILKKISWQIAKGD---KWILYGLNGAGKTTLLNILNAYEPATSGTVNLFGKMPGKVGYSAETVRQH 98 (279)
T ss_dssp EEEEEEEEEETTEEEEEEEEEEEETTC---EEEEECCTTSSHHHHHHHHTTSSCCSEEEEEETTBCCC---CCHHHHHTT
T ss_pred EEEEeEEEEECCEEEEEeeeEEEcCCC---EEEEECCCCCcHHHHHHHHhCCCCCCCeEEEECCEEcccccCCHHHHcCc
Confidence 344566677777889999999999999 99999999999999999999998 89999999996543 135
Q ss_pred ccccCCCCCCC--chhhHHHHHHhhhc------C--c-----c-------ccc-ccccccccccccceeeecCCccEEEE
Q 006117 108 IDGNFDDPRLT--DYDTLLENIRGLKE------G--K-----A-------VQV-PIYDFKSSSRIGYRTLEVPSSRIVII 164 (660)
Q Consensus 108 i~~vfq~p~l~--d~~tl~e~L~~L~~------G--k-----~-------I~~-PiyD~s~~~rs~~~~~~v~~a~VVIV 164 (660)
++++||++.++ ...++.+++..... + . . +.. ...+....+.++++.+++..++.++.
T Consensus 99 i~~v~Q~~~~~~~~~ltv~enl~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~LSgGqkqRv~lAraL~~ 178 (279)
T 2ihy_A 99 IGFVSHSLLEKFQEGERVIDVVISGAFKSIGVYQDIDDEIRNEAHQLLKLVGMSAKAQQYIGYLSTGEKQRVMIARALMG 178 (279)
T ss_dssp EEEECHHHHTTSCTTSBHHHHHHTTC---------CCHHHHHHHHHHHHHTTCGGGTTSBGGGSCHHHHHHHHHHHHHHT
T ss_pred EEEEEcCcccccCCCCCHHHHHHhhhhhccccccCCcHHHHHHHHHHHHHcCChhHhcCChhhCCHHHHHHHHHHHHHhC
Confidence 78999987543 23588888864210 0 0 0 001 11233345566778888888999999
Q ss_pred ecceeecccccCCCCE
Q 006117 165 EGIYALSEKLRPLIDL 180 (660)
Q Consensus 165 EGilaL~deLr~llDl 180 (660)
++.+++.||+...+|.
T Consensus 179 ~p~lLlLDEPts~LD~ 194 (279)
T 2ihy_A 179 QPQVLILDEPAAGLDF 194 (279)
T ss_dssp CCSEEEEESTTTTCCH
T ss_pred CCCEEEEeCCccccCH
Confidence 9999999999999997
No 32
>1vpl_A ABC transporter, ATP-binding protein; TM0544, structural GENO joint center for structural genomics, JCSG, protein structu initiative, PSI; 2.10A {Thermotoga maritima} SCOP: c.37.1.12
Probab=99.55 E-value=2.7e-15 Score=153.73 Aligned_cols=157 Identities=15% Similarity=0.188 Sum_probs=118.1
Q ss_pred cceeeeecCceEEEEecceeeccCCcceEEEEECCCCCcHHHHHHHHHHhC-CCceEEEecCcccc------cccccccC
Q 006117 40 EDTLSFEKGFFIVIRACQLLAQKNHGIILVGVAGPSGAGKTVFTEKVLNFM-PSIAVITMDNYNDS------SRIIDGNF 112 (660)
Q Consensus 40 ~~~ls~~~g~~~vL~~Isl~i~~ge~~~IIGI~GpSGSGKSTLak~L~~lL-p~~g~I~lDg~~~~------~~~i~~vf 112 (660)
.+++++.++...+|+++||.+++|+ ++||+||||||||||+++|++++ |+.|.|.++|.... .+.++++|
T Consensus 18 i~~l~~~y~~~~vl~~vsl~i~~Ge---i~~l~G~NGsGKSTLlk~l~Gl~~p~~G~I~~~g~~~~~~~~~~~~~i~~v~ 94 (256)
T 1vpl_A 18 VKDLRKRIGKKEILKGISFEIEEGE---IFGLIGPNGAGKTTTLRIISTLIKPSSGIVTVFGKNVVEEPHEVRKLISYLP 94 (256)
T ss_dssp EEEEEEEETTEEEEEEEEEEECTTC---EEEEECCTTSSHHHHHHHHTTSSCCSEEEEEETTEETTTCHHHHHTTEEEEC
T ss_pred EEEEEEEECCEEEEEeeEEEEcCCc---EEEEECCCCCCHHHHHHHHhcCCCCCceEEEECCEECCccHHHHhhcEEEEc
Confidence 4566666777889999999999999 99999999999999999999998 88999999997542 13578999
Q ss_pred CCCCCCchhhHHHHHHhhhc--Cc-------c-------ccc-ccccccccccccceeeecCCccEEEEecceeeccccc
Q 006117 113 DDPRLTDYDTLLENIRGLKE--GK-------A-------VQV-PIYDFKSSSRIGYRTLEVPSSRIVIIEGIYALSEKLR 175 (660)
Q Consensus 113 q~p~l~d~~tl~e~L~~L~~--Gk-------~-------I~~-PiyD~s~~~rs~~~~~~v~~a~VVIVEGilaL~deLr 175 (660)
|++.+++..++.+++..... +. . +.. ...+......++++.+++..++.++.++.+++.||+.
T Consensus 95 q~~~l~~~ltv~enl~~~~~~~~~~~~~~~~~~~~~l~~~gL~~~~~~~~~~LSgGq~qRv~lAraL~~~p~lllLDEPt 174 (256)
T 1vpl_A 95 EEAGAYRNMQGIEYLRFVAGFYASSSSEIEEMVERATEIAGLGEKIKDRVSTYSKGMVRKLLIARALMVNPRLAILDEPT 174 (256)
T ss_dssp TTCCCCTTSBHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHCCGGGGGSBGGGCCHHHHHHHHHHHHHTTCCSEEEEESTT
T ss_pred CCCCCCCCCcHHHHHHHHHHHcCCChHHHHHHHHHHHHHCCCchHhcCChhhCCHHHHHHHHHHHHHHcCCCEEEEeCCc
Confidence 99999988899999865321 10 0 111 1123334556677888888889999999999999999
Q ss_pred CCCCEEEEEEcChhHHHHHHHHHHHHHhCCC
Q 006117 176 PLIDLRVSVTGGVHFDLVKRVFRDIQRVGQE 206 (660)
Q Consensus 176 ~llDlkIfVdad~dirLiRRI~RDv~eRGrs 206 (660)
..+|. .....+..+.+.+.+.|.+
T Consensus 175 s~LD~-------~~~~~l~~~l~~l~~~g~t 198 (256)
T 1vpl_A 175 SGLDV-------LNAREVRKILKQASQEGLT 198 (256)
T ss_dssp TTCCH-------HHHHHHHHHHHHHHHTTCE
T ss_pred cccCH-------HHHHHHHHHHHHHHhCCCE
Confidence 99997 3334444444444433443
No 33
>4g1u_C Hemin import ATP-binding protein HMUV; membrane transporter, type II ABC importer, HMUT, plasma MEM transport protein-hydrolase complex; 3.01A {Yersinia pestis}
Probab=99.55 E-value=3.7e-15 Score=153.41 Aligned_cols=140 Identities=16% Similarity=0.148 Sum_probs=112.1
Q ss_pred eccceeeeecCceEEEEecceeeccCCcceEEEEECCCCCcHHHHHHHHHHhC-CCceEEEecCccccc-------cccc
Q 006117 38 PIEDTLSFEKGFFIVIRACQLLAQKNHGIILVGVAGPSGAGKTVFTEKVLNFM-PSIAVITMDNYNDSS-------RIID 109 (660)
Q Consensus 38 ~~~~~ls~~~g~~~vL~~Isl~i~~ge~~~IIGI~GpSGSGKSTLak~L~~lL-p~~g~I~lDg~~~~~-------~~i~ 109 (660)
...+++++.++...+|++|||.+++|+ ++||+||||||||||+++|++++ |+.|.|.++|..... +.++
T Consensus 12 l~~~~l~~~~~~~~vL~~vsl~i~~Ge---~~~liG~nGsGKSTLl~~l~Gl~~p~~G~I~~~g~~~~~~~~~~~~~~i~ 88 (266)
T 4g1u_C 12 LEASHLHYHVQQQALINDVSLHIASGE---MVAIIGPNGAGKSTLLRLLTGYLSPSHGECHLLGQNLNSWQPKALARTRA 88 (266)
T ss_dssp EEEEEEEEEETTEEEEEEEEEEEETTC---EEEEECCTTSCHHHHHHHHTSSSCCSSCEEEETTEETTTSCHHHHHHHEE
T ss_pred EEEEeEEEEeCCeeEEEeeEEEEcCCC---EEEEECCCCCcHHHHHHHHhcCCCCCCcEEEECCEECCcCCHHHHhheEE
Confidence 344667777788899999999999999 99999999999999999999998 899999999975432 3478
Q ss_pred ccCCCCCCCchhhHHHHHHhhhcC---c-----------cccc-ccccccccccccceeeecCCccEEEE------ecce
Q 006117 110 GNFDDPRLTDYDTLLENIRGLKEG---K-----------AVQV-PIYDFKSSSRIGYRTLEVPSSRIVII------EGIY 168 (660)
Q Consensus 110 ~vfq~p~l~d~~tl~e~L~~L~~G---k-----------~I~~-PiyD~s~~~rs~~~~~~v~~a~VVIV------EGil 168 (660)
+++|++.++...++.+++...... . .+.. ...+...+..++++.+++..++.++. ++.+
T Consensus 89 ~v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgGq~QRv~iAraL~~~~~~~~~p~l 168 (266)
T 4g1u_C 89 VMRQYSELAFPFSVSEVIQMGRAPYGGSQDRQALQQVMAQTDCLALAQRDYRVLSGGEQQRVQLARVLAQLWQPQPTPRW 168 (266)
T ss_dssp EECSCCCCCSCCBHHHHHHGGGTTSCSTTHHHHHHHHHHHTTCSTTTTSBGGGCCHHHHHHHHHHHHHHHTCCSSCCCEE
T ss_pred EEecCCccCCCCCHHHHHHhhhhhcCcHHHHHHHHHHHHHcCChhHhcCCcccCCHHHHHHHHHHHHHhcccccCCCCCE
Confidence 999999888888999998753211 0 0111 12234445667788888888888888 9999
Q ss_pred eecccccCCCCE
Q 006117 169 ALSEKLRPLIDL 180 (660)
Q Consensus 169 aL~deLr~llDl 180 (660)
++.||+...+|.
T Consensus 169 LllDEPts~LD~ 180 (266)
T 4g1u_C 169 LFLDEPTSALDL 180 (266)
T ss_dssp EEECCCCSSCCH
T ss_pred EEEeCccccCCH
Confidence 999999999997
No 34
>2it1_A 362AA long hypothetical maltose/maltodextrin transport ATP-binding protein; structural genomics, NPPSFA; 1.94A {Pyrococcus horikoshii}
Probab=99.55 E-value=3e-15 Score=160.76 Aligned_cols=138 Identities=18% Similarity=0.209 Sum_probs=112.4
Q ss_pred cceeeeecCceEEEEecceeeccCCcceEEEEECCCCCcHHHHHHHHHHhC-CCceEEEecCcccc-----cccccccCC
Q 006117 40 EDTLSFEKGFFIVIRACQLLAQKNHGIILVGVAGPSGAGKTVFTEKVLNFM-PSIAVITMDNYNDS-----SRIIDGNFD 113 (660)
Q Consensus 40 ~~~ls~~~g~~~vL~~Isl~i~~ge~~~IIGI~GpSGSGKSTLak~L~~lL-p~~g~I~lDg~~~~-----~~~i~~vfq 113 (660)
.+++++.++...+|+++||.+++|+ +++|+||||||||||+++|++++ |+.|.|.++|.... .+.++++||
T Consensus 6 ~~~l~~~y~~~~vl~~vsl~i~~Ge---~~~llGpnGsGKSTLLr~iaGl~~p~~G~I~i~g~~i~~~~~~~r~ig~v~Q 82 (362)
T 2it1_A 6 LENIVKKFGNFTALNNINLKIKDGE---FMALLGPSGSGKSTLLYTIAGIYKPTSGKIYFDEKDVTELPPKDRNVGLVFQ 82 (362)
T ss_dssp EEEEEEESSSSEEEEEEEEEECTTC---EEEEECCTTSSHHHHHHHHHTSSCCSEEEEEETTEECTTSCGGGTTEEEECT
T ss_pred EEeEEEEECCEEEEEeeEEEECCCC---EEEEECCCCchHHHHHHHHhcCCCCCceEEEECCEECCcCCHhHCcEEEEec
Confidence 3556666677789999999999999 99999999999999999999998 89999999996432 256899999
Q ss_pred CCCCCchhhHHHHHHhhhc--Cc--------------cccc-ccccccccccccceeeecCCccEEEEecceeecccccC
Q 006117 114 DPRLTDYDTLLENIRGLKE--GK--------------AVQV-PIYDFKSSSRIGYRTLEVPSSRIVIIEGIYALSEKLRP 176 (660)
Q Consensus 114 ~p~l~d~~tl~e~L~~L~~--Gk--------------~I~~-PiyD~s~~~rs~~~~~~v~~a~VVIVEGilaL~deLr~ 176 (660)
++.+|+.+++.+|+..... +. .+.. ...+...++.++++.+++..++.++.++.+++.||+..
T Consensus 83 ~~~l~~~ltv~eni~~~~~~~~~~~~~~~~~v~~~l~~~~L~~~~~r~~~~LSGGq~QRvalArAL~~~P~lLLLDEP~s 162 (362)
T 2it1_A 83 NWALYPHMTVYKNIAFPLELRKAPREEIDKKVREVAKMLHIDKLLNRYPWQLSGGQQQRVAIARALVKEPEVLLLDEPLS 162 (362)
T ss_dssp TCCCCTTSCHHHHHHHHHHHTTCCHHHHHHHHHHHHHHTTCTTCTTCCGGGSCHHHHHHHHHHHHHTTCCSEEEEESGGG
T ss_pred CcccCCCCCHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCchHhhCChhhCCHHHHHHHHHHHHHHcCCCEEEEECccc
Confidence 9999999999999865211 10 0111 12344456677888889999999999999999999999
Q ss_pred CCCE
Q 006117 177 LIDL 180 (660)
Q Consensus 177 llDl 180 (660)
.+|.
T Consensus 163 ~LD~ 166 (362)
T 2it1_A 163 NLDA 166 (362)
T ss_dssp GSCH
T ss_pred cCCH
Confidence 9997
No 35
>2yz2_A Putative ABC transporter ATP-binding protein TM_0; cobalt transport, TM02 hydrolase, inner membrane, membrane, nucleotide-binding; 2.30A {Thermotoga maritima}
Probab=99.54 E-value=5.2e-15 Score=152.00 Aligned_cols=138 Identities=15% Similarity=0.129 Sum_probs=106.2
Q ss_pred cceeeeecC--c---eEEEEecceeeccCCcceEEEEECCCCCcHHHHHHHHHHhC-CCceEEEecCcccc----ccccc
Q 006117 40 EDTLSFEKG--F---FIVIRACQLLAQKNHGIILVGVAGPSGAGKTVFTEKVLNFM-PSIAVITMDNYNDS----SRIID 109 (660)
Q Consensus 40 ~~~ls~~~g--~---~~vL~~Isl~i~~ge~~~IIGI~GpSGSGKSTLak~L~~lL-p~~g~I~lDg~~~~----~~~i~ 109 (660)
.+++++.++ . ..+|+++||.+++|+ ++||+||||||||||+++|++++ |..|.|.++|.... .+.++
T Consensus 5 ~~~l~~~y~~~~~~~~~vl~~vsl~i~~Ge---~~~liG~nGsGKSTLl~~i~Gl~~p~~G~I~~~g~~~~~~~~~~~i~ 81 (266)
T 2yz2_A 5 VVNVSHIFHRGTPLEKKALENVSLVINEGE---CLLVAGNTGSGKSTLLQIVAGLIEPTSGDVLYDGERKKGYEIRRNIG 81 (266)
T ss_dssp EEEEEEEESTTSTTCEEEEEEEEEEECTTC---EEEEECSTTSSHHHHHHHHTTSSCCSEEEEEETTEECCHHHHGGGEE
T ss_pred EEEEEEEecCCCccccceeeeeEEEEcCCC---EEEEECCCCCcHHHHHHHHhCCCCCCCcEEEECCEECchHHhhhhEE
Confidence 345555554 3 679999999999999 99999999999999999999998 79999999997542 24588
Q ss_pred ccCCCC-CCCchhhHHHHHHhhhcC----cc-----------ccc---ccccccccccccceeeecCCccEEEEecceee
Q 006117 110 GNFDDP-RLTDYDTLLENIRGLKEG----KA-----------VQV---PIYDFKSSSRIGYRTLEVPSSRIVIIEGIYAL 170 (660)
Q Consensus 110 ~vfq~p-~l~d~~tl~e~L~~L~~G----k~-----------I~~---PiyD~s~~~rs~~~~~~v~~a~VVIVEGilaL 170 (660)
++||+| ..+...++.+++...... .. +.. ...+...+..++++.+++..++.++.++.+++
T Consensus 82 ~v~q~~~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~~~LSgGq~qRv~lAraL~~~p~lll 161 (266)
T 2yz2_A 82 IAFQYPEDQFFAERVFDEVAFAVKNFYPDRDPVPLVKKAMEFVGLDFDSFKDRVPFFLSGGEKRRVAIASVIVHEPDILI 161 (266)
T ss_dssp EECSSGGGGCCCSSHHHHHHHTTTTTCTTSCSHHHHHHHHHHTTCCHHHHTTCCGGGSCHHHHHHHHHHHHHTTCCSEEE
T ss_pred EEeccchhhcCCCcHHHHHHHHHHhcCCHHHHHHHHHHHHHHcCcCCcccccCChhhCCHHHHHHHHHHHHHHcCCCEEE
Confidence 999996 455667999998653210 00 111 11233345566778888888899999999999
Q ss_pred cccccCCCCE
Q 006117 171 SEKLRPLIDL 180 (660)
Q Consensus 171 ~deLr~llDl 180 (660)
.||+...+|.
T Consensus 162 LDEPts~LD~ 171 (266)
T 2yz2_A 162 LDEPLVGLDR 171 (266)
T ss_dssp EESTTTTCCH
T ss_pred EcCccccCCH
Confidence 9999999997
No 36
>3d31_A Sulfate/molybdate ABC transporter, ATP-binding protein; ATP-binding, nucleotide-binding, membrane, transmembrane, transport protein; 3.00A {Methanosarcina acetivorans} SCOP: b.40.6.3 c.37.1.12
Probab=99.54 E-value=3e-15 Score=159.93 Aligned_cols=136 Identities=19% Similarity=0.221 Sum_probs=110.7
Q ss_pred ceeeeecCceEEEEecceeeccCCcceEEEEECCCCCcHHHHHHHHHHhC-CCceEEEecCcccc-----cccccccCCC
Q 006117 41 DTLSFEKGFFIVIRACQLLAQKNHGIILVGVAGPSGAGKTVFTEKVLNFM-PSIAVITMDNYNDS-----SRIIDGNFDD 114 (660)
Q Consensus 41 ~~ls~~~g~~~vL~~Isl~i~~ge~~~IIGI~GpSGSGKSTLak~L~~lL-p~~g~I~lDg~~~~-----~~~i~~vfq~ 114 (660)
+++++.++.. ++++++|.+++|+ +++|+||||||||||+++|++++ |+.|.|.++|.... .+.++++||+
T Consensus 5 ~~l~~~y~~~-~l~~vsl~i~~Ge---~~~llGpnGsGKSTLLr~iaGl~~p~~G~I~~~g~~i~~~~~~~r~ig~v~Q~ 80 (348)
T 3d31_A 5 ESLSRKWKNF-SLDNLSLKVESGE---YFVILGPTGAGKTLFLELIAGFHVPDSGRILLDGKDVTDLSPEKHDIAFVYQN 80 (348)
T ss_dssp EEEEEECSSC-EEEEEEEEECTTC---EEEEECCCTHHHHHHHHHHHTSSCCSEEEEEETTEECTTSCHHHHTCEEECTT
T ss_pred EEEEEEECCE-EEeeeEEEEcCCC---EEEEECCCCccHHHHHHHHHcCCCCCCcEEEECCEECCCCchhhCcEEEEecC
Confidence 4555666666 9999999999999 99999999999999999999998 89999999997542 2468999999
Q ss_pred CCCCchhhHHHHHHhhhc--C--c--c-------ccc-ccccccccccccceeeecCCccEEEEecceeecccccCCCCE
Q 006117 115 PRLTDYDTLLENIRGLKE--G--K--A-------VQV-PIYDFKSSSRIGYRTLEVPSSRIVIIEGIYALSEKLRPLIDL 180 (660)
Q Consensus 115 p~l~d~~tl~e~L~~L~~--G--k--~-------I~~-PiyD~s~~~rs~~~~~~v~~a~VVIVEGilaL~deLr~llDl 180 (660)
+.+|+.+++.+|+..... + + . +.. ...+...++.++++.+++..++.++.++.+++.||+...+|.
T Consensus 81 ~~l~~~ltv~enl~~~~~~~~~~~~~~v~~~l~~~~L~~~~~~~~~~LSgGq~QRvalAraL~~~P~lLLLDEP~s~LD~ 160 (348)
T 3d31_A 81 YSLFPHMNVKKNLEFGMRMKKIKDPKRVLDTARDLKIEHLLDRNPLTLSGGEQQRVALARALVTNPKILLLDEPLSALDP 160 (348)
T ss_dssp CCCCTTSCHHHHHHHHHHHHCCCCHHHHHHHHHHTTCTTTTTSCGGGSCHHHHHHHHHHHHTTSCCSEEEEESSSTTSCH
T ss_pred cccCCCCCHHHHHHHHHHHcCCCHHHHHHHHHHHcCCchHhcCChhhCCHHHHHHHHHHHHHHcCCCEEEEECccccCCH
Confidence 999999999999865321 1 0 0 111 123444566778888899999999999999999999999997
No 37
>1sgw_A Putative ABC transporter; structural genomics, P protein structure initiative, southeast collaboratory for S genomics, secsg; 1.70A {Pyrococcus furiosus} SCOP: c.37.1.12
Probab=99.54 E-value=3.8e-15 Score=148.87 Aligned_cols=137 Identities=15% Similarity=0.119 Sum_probs=107.9
Q ss_pred cceeeeecCceEEEEecceeeccCCcceEEEEECCCCCcHHHHHHHHHHhC-CCceEEEecCccc--ccccccccCCCCC
Q 006117 40 EDTLSFEKGFFIVIRACQLLAQKNHGIILVGVAGPSGAGKTVFTEKVLNFM-PSIAVITMDNYND--SSRIIDGNFDDPR 116 (660)
Q Consensus 40 ~~~ls~~~g~~~vL~~Isl~i~~ge~~~IIGI~GpSGSGKSTLak~L~~lL-p~~g~I~lDg~~~--~~~~i~~vfq~p~ 116 (660)
.+++++.++. .+|+++||.+++|+ +++|+||||||||||+++|++++ |+.|.|.++|... ..+.++++||++.
T Consensus 13 ~~~ls~~y~~-~il~~vsl~i~~Ge---~~~iiG~NGsGKSTLlk~l~Gl~~p~~G~I~~~g~~~~~~~~~i~~v~q~~~ 88 (214)
T 1sgw_A 13 IRDLSVGYDK-PVLERITMTIEKGN---VVNFHGPNGIGKTTLLKTISTYLKPLKGEIIYNGVPITKVKGKIFFLPEEII 88 (214)
T ss_dssp EEEEEEESSS-EEEEEEEEEEETTC---CEEEECCTTSSHHHHHHHHTTSSCCSEEEEEETTEEGGGGGGGEEEECSSCC
T ss_pred EEEEEEEeCC-eEEeeeEEEEcCCC---EEEEECCCCCCHHHHHHHHhcCCCCCCeEEEECCEEhhhhcCcEEEEeCCCc
Confidence 3556666676 89999999999999 99999999999999999999998 8899999999653 2345889999999
Q ss_pred CCchhhHHHHHHhhhc--C--cc----------cccccccccccccccceeeecCCccEEEEecceeecccccCCCCE
Q 006117 117 LTDYDTLLENIRGLKE--G--KA----------VQVPIYDFKSSSRIGYRTLEVPSSRIVIIEGIYALSEKLRPLIDL 180 (660)
Q Consensus 117 l~d~~tl~e~L~~L~~--G--k~----------I~~PiyD~s~~~rs~~~~~~v~~a~VVIVEGilaL~deLr~llDl 180 (660)
+++..++.+++..... + .. .....++......++++.+++..+..++.++.+++.||+...+|.
T Consensus 89 ~~~~~tv~enl~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~LSgGqkqrv~laraL~~~p~lllLDEPts~LD~ 166 (214)
T 1sgw_A 89 VPRKISVEDYLKAVASLYGVKVNKNEIMDALESVEVLDLKKKLGELSQGTIRRVQLASTLLVNAEIYVLDDPVVAIDE 166 (214)
T ss_dssp CCTTSBHHHHHHHHHHHTTCCCCHHHHHHHHHHTTCCCTTSBGGGSCHHHHHHHHHHHHTTSCCSEEEEESTTTTSCT
T ss_pred CCCCCCHHHHHHHHHHhcCCchHHHHHHHHHHHcCCCcCCCChhhCCHHHHHHHHHHHHHHhCCCEEEEECCCcCCCH
Confidence 9888899999864311 1 00 111111333445566788888888899999999999999999996
No 38
>1oxx_K GLCV, glucose, ABC transporter, ATP binding protein; ABC-ATPase, ATP-binding cassette, ATPase, transport protein; 1.45A {Sulfolobus solfataricus} SCOP: b.40.6.3 c.37.1.12 PDB: 1oxs_C 1oxt_A 1oxu_A* 1oxv_A*
Probab=99.54 E-value=2.6e-15 Score=160.66 Aligned_cols=137 Identities=20% Similarity=0.174 Sum_probs=110.8
Q ss_pred ceeeeecCceE--EEEecceeeccCCcceEEEEECCCCCcHHHHHHHHHHhC-CCceEEEecCcccc----------ccc
Q 006117 41 DTLSFEKGFFI--VIRACQLLAQKNHGIILVGVAGPSGAGKTVFTEKVLNFM-PSIAVITMDNYNDS----------SRI 107 (660)
Q Consensus 41 ~~ls~~~g~~~--vL~~Isl~i~~ge~~~IIGI~GpSGSGKSTLak~L~~lL-p~~g~I~lDg~~~~----------~~~ 107 (660)
+++++.++... +|+++||.+++|+ +++|+||||||||||+++|++++ |+.|.|.++|.... .+.
T Consensus 7 ~~l~~~y~~~~~~vl~~vsl~i~~Ge---~~~llGpnGsGKSTLLr~iaGl~~p~~G~I~i~g~~i~~~~~~~~~~~~r~ 83 (353)
T 1oxx_K 7 KNVSKVFKKGKVVALDNVNINIENGE---RFGILGPSGAGKTTFMRIIAGLDVPSTGELYFDDRLVASNGKLIVPPEDRK 83 (353)
T ss_dssp EEEEEEEGGGTEEEEEEEEEEECTTC---EEEEECSCHHHHHHHHHHHHTSSCCSEEEEEETTEEEEETTEESSCGGGSC
T ss_pred EeEEEEECCEeeeeEeceEEEECCCC---EEEEECCCCCcHHHHHHHHhCCCCCCceEEEECCEECcccccccCChhhCC
Confidence 45555566666 9999999999999 99999999999999999999998 89999999986421 245
Q ss_pred ccccCCCCCCCchhhHHHHHHhhhc--Cc--------------cccc-ccccccccccccceeeecCCccEEEEecceee
Q 006117 108 IDGNFDDPRLTDYDTLLENIRGLKE--GK--------------AVQV-PIYDFKSSSRIGYRTLEVPSSRIVIIEGIYAL 170 (660)
Q Consensus 108 i~~vfq~p~l~d~~tl~e~L~~L~~--Gk--------------~I~~-PiyD~s~~~rs~~~~~~v~~a~VVIVEGilaL 170 (660)
++++||++.+|+.+++.+|+..... +. .+.. ...+...++.++++.+++..++.++.++.+++
T Consensus 84 ig~v~Q~~~l~~~ltv~eni~~~~~~~~~~~~~~~~~v~~~l~~~~L~~~~~~~~~~LSGGq~QRvalAraL~~~P~lLL 163 (353)
T 1oxx_K 84 IGMVFQTWALYPNLTAFENIAFPLTNMKMSKEEIRKRVEEVAKILDIHHVLNHFPRELSGAQQQRVALARALVKDPSLLL 163 (353)
T ss_dssp EEEEETTSCCCTTSCHHHHHHGGGTTSSCCHHHHHHHHHHHHHHTTCGGGTTSCGGGSCHHHHHHHHHHHHHTTCCSEEE
T ss_pred EEEEeCCCccCCCCCHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCchHhcCChhhCCHHHHHHHHHHHHHHhCCCEEE
Confidence 8899999999999999999976321 10 0111 12344456677888889999999999999999
Q ss_pred cccccCCCCE
Q 006117 171 SEKLRPLIDL 180 (660)
Q Consensus 171 ~deLr~llDl 180 (660)
.||+...+|.
T Consensus 164 LDEP~s~LD~ 173 (353)
T 1oxx_K 164 LDEPFSNLDA 173 (353)
T ss_dssp EESTTTTSCG
T ss_pred EECCcccCCH
Confidence 9999999997
No 39
>1z47_A CYSA, putative ABC-transporter ATP-binding protein; alpha/beta motif, beta sandwich, ligand binding protein; 1.90A {Alicyclobacillus acidocaldarius}
Probab=99.54 E-value=2.4e-15 Score=161.19 Aligned_cols=138 Identities=17% Similarity=0.129 Sum_probs=111.6
Q ss_pred cceeeeec-CceEEEEecceeeccCCcceEEEEECCCCCcHHHHHHHHHHhC-CCceEEEecCcccc-----cccccccC
Q 006117 40 EDTLSFEK-GFFIVIRACQLLAQKNHGIILVGVAGPSGAGKTVFTEKVLNFM-PSIAVITMDNYNDS-----SRIIDGNF 112 (660)
Q Consensus 40 ~~~ls~~~-g~~~vL~~Isl~i~~ge~~~IIGI~GpSGSGKSTLak~L~~lL-p~~g~I~lDg~~~~-----~~~i~~vf 112 (660)
.+++++.+ +...+|+++||.+++|+ +++|+||||||||||+++|++++ |+.|.|.++|.... .+.++++|
T Consensus 17 ~~~l~~~y~g~~~vl~~vsl~i~~Ge---~~~llGpnGsGKSTLLr~iaGl~~p~~G~I~i~g~~i~~~~~~~r~ig~v~ 93 (355)
T 1z47_A 17 FVGVEKIYPGGARSVRGVSFQIREGE---MVGLLGPSGSGKTTILRLIAGLERPTKGDVWIGGKRVTDLPPQKRNVGLVF 93 (355)
T ss_dssp EEEEEECCTTSTTCEEEEEEEEETTC---EEEEECSTTSSHHHHHHHHHTSSCCSEEEEEETTEECTTCCGGGSSEEEEC
T ss_pred EEEEEEEEcCCCEEEeeeEEEECCCC---EEEEECCCCCcHHHHHHHHhCCCCCCccEEEECCEECCcCChhhCcEEEEe
Confidence 34555666 66679999999999999 99999999999999999999998 89999999996432 25689999
Q ss_pred CCCCCCchhhHHHHHHhhhc--C---c-----------cccc-ccccccccccccceeeecCCccEEEEecceeeccccc
Q 006117 113 DDPRLTDYDTLLENIRGLKE--G---K-----------AVQV-PIYDFKSSSRIGYRTLEVPSSRIVIIEGIYALSEKLR 175 (660)
Q Consensus 113 q~p~l~d~~tl~e~L~~L~~--G---k-----------~I~~-PiyD~s~~~rs~~~~~~v~~a~VVIVEGilaL~deLr 175 (660)
|++.+|+.+++.+|+..... + . .+.. ...+...++.++++.+++..++.++.++.+++.||+.
T Consensus 94 Q~~~l~~~ltv~eni~~~l~~~~~~~~~~~~~v~~~l~~~gL~~~~~r~~~~LSGGq~QRvalArAL~~~P~lLLLDEP~ 173 (355)
T 1z47_A 94 QNYALFQHMTVYDNVSFGLREKRVPKDEMDARVRELLRFMRLESYANRFPHELSGGQQQRVALARALAPRPQVLLFDEPF 173 (355)
T ss_dssp GGGCCCTTSCHHHHHHHHHHHTTCCHHHHHHHHHHHHHHTTCGGGTTSCGGGSCHHHHHHHHHHHHHTTCCSEEEEESTT
T ss_pred cCcccCCCCCHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCChhHhcCCcccCCHHHHHHHHHHHHHHcCCCEEEEeCCc
Confidence 99999999999999865211 1 0 0111 1234455667788888999999999999999999999
Q ss_pred CCCCE
Q 006117 176 PLIDL 180 (660)
Q Consensus 176 ~llDl 180 (660)
..+|.
T Consensus 174 s~LD~ 178 (355)
T 1z47_A 174 AAIDT 178 (355)
T ss_dssp CCSSH
T ss_pred ccCCH
Confidence 99997
No 40
>2d2e_A SUFC protein; ABC-ATPase, SUF protein, 310-helix, riken structural genomics/proteomics initiative, RSGI, structural genomics, binding; 1.70A {Thermus thermophilus} PDB: 2d2f_A*
Probab=99.53 E-value=9.7e-15 Score=148.58 Aligned_cols=139 Identities=16% Similarity=0.122 Sum_probs=104.9
Q ss_pred ccceeeeecCceEEEEecceeeccCCcceEEEEECCCCCcHHHHHHHHHHh--C-CCceEEEecCccccc--------cc
Q 006117 39 IEDTLSFEKGFFIVIRACQLLAQKNHGIILVGVAGPSGAGKTVFTEKVLNF--M-PSIAVITMDNYNDSS--------RI 107 (660)
Q Consensus 39 ~~~~ls~~~g~~~vL~~Isl~i~~ge~~~IIGI~GpSGSGKSTLak~L~~l--L-p~~g~I~lDg~~~~~--------~~ 107 (660)
..+++++.++...+|+++||.+++|+ ++||+||||||||||+++|+++ + |+.|.|.++|..... ..
T Consensus 5 ~~~~l~~~y~~~~vl~~vsl~i~~Ge---~~~l~G~nGsGKSTLlk~l~Gl~~~~p~~G~I~~~g~~~~~~~~~~~~~~~ 81 (250)
T 2d2e_A 5 EIRDLWASIDGETILKGVNLVVPKGE---VHALMGPNGAGKSTLGKILAGDPEYTVERGEILLDGENILELSPDERARKG 81 (250)
T ss_dssp EEEEEEEEETTEEEEEEEEEEEETTC---EEEEECSTTSSHHHHHHHHHTCTTCEEEEEEEEETTEECTTSCHHHHHHTT
T ss_pred EEEeEEEEECCEEEEeceEEEEcCCC---EEEEECCCCCCHHHHHHHHhCCCCCCCCceEEEECCEECCCCCHHHHHhCc
Confidence 34566677777889999999999999 9999999999999999999998 5 789999999975321 23
Q ss_pred ccccCCCCCCCchhhHHHHHHhhh---cCc---------c-------ccc--ccccccccc-cccceeeecCCccEEEEe
Q 006117 108 IDGNFDDPRLTDYDTLLENIRGLK---EGK---------A-------VQV--PIYDFKSSS-RIGYRTLEVPSSRIVIIE 165 (660)
Q Consensus 108 i~~vfq~p~l~d~~tl~e~L~~L~---~Gk---------~-------I~~--PiyD~s~~~-rs~~~~~~v~~a~VVIVE 165 (660)
++++||++.+++..++.+++.... .+. . +.. ...+...+. .++++.+++..++.++.+
T Consensus 82 i~~v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~~~LSgGqkQrv~iAraL~~~ 161 (250)
T 2d2e_A 82 LFLAFQYPVEVPGVTIANFLRLALQAKLGREVGVAEFWTKVKKALELLDWDESYLSRYLNEGFSGGEKKRNEILQLLVLE 161 (250)
T ss_dssp BCCCCCCCC-CCSCBHHHHHHHHHHHHHTSCCCHHHHHHHHHHHHHHHTCCGGGGGSBTTCC----HHHHHHHHHHHHHC
T ss_pred EEEeccCCccccCCCHHHHHHHHHHhhccccCCHHHHHHHHHHHHHHcCCChhHhcCCcccCCCHHHHHHHHHHHHHHcC
Confidence 678999999998888888875321 110 0 011 122333455 777888889999999999
Q ss_pred cceeecccccCCCCE
Q 006117 166 GIYALSEKLRPLIDL 180 (660)
Q Consensus 166 GilaL~deLr~llDl 180 (660)
+.+++.||+...+|.
T Consensus 162 p~lllLDEPts~LD~ 176 (250)
T 2d2e_A 162 PTYAVLDETDSGLDI 176 (250)
T ss_dssp CSEEEEECGGGTTCH
T ss_pred CCEEEEeCCCcCCCH
Confidence 999999999999997
No 41
>2onk_A Molybdate/tungstate ABC transporter, ATP-binding protein; membrane protein; 3.10A {Archaeoglobus fulgidus} SCOP: c.37.1.12
Probab=99.50 E-value=2.3e-14 Score=145.31 Aligned_cols=154 Identities=19% Similarity=0.174 Sum_probs=114.9
Q ss_pred ceeeeecCceEEEEecceeeccCCcceEEEEECCCCCcHHHHHHHHHHhC-CCceEEEecCcccc-----cccccccCCC
Q 006117 41 DTLSFEKGFFIVIRACQLLAQKNHGIILVGVAGPSGAGKTVFTEKVLNFM-PSIAVITMDNYNDS-----SRIIDGNFDD 114 (660)
Q Consensus 41 ~~ls~~~g~~~vL~~Isl~i~~ge~~~IIGI~GpSGSGKSTLak~L~~lL-p~~g~I~lDg~~~~-----~~~i~~vfq~ 114 (660)
+++++.++. +++++||.+++ + ++||+||||||||||+++|++++ |+.|.|.++|.... .+.++++||+
T Consensus 5 ~~l~~~y~~--~l~~isl~i~~-e---~~~liG~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~i~~v~q~ 78 (240)
T 2onk_A 5 VRAEKRLGN--FRLNVDFEMGR-D---YCVLLGPTGAGKSVFLELIAGIVKPDRGEVRLNGADITPLPPERRGIGFVPQD 78 (240)
T ss_dssp EEEEEEETT--EEEEEEEEECS-S---EEEEECCTTSSHHHHHHHHHTSSCCSEEEEEETTEECTTSCTTTSCCBCCCSS
T ss_pred EEEEEEeCC--EEeeeEEEECC-E---EEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEECCcCchhhCcEEEEcCC
Confidence 445555555 49999999999 9 99999999999999999999998 89999999996432 2458899999
Q ss_pred CCCCchhhHHHHHHhhhc--C-----c-------cccc-ccccccccccccceeeecCCccEEEEecceeecccccCCCC
Q 006117 115 PRLTDYDTLLENIRGLKE--G-----K-------AVQV-PIYDFKSSSRIGYRTLEVPSSRIVIIEGIYALSEKLRPLID 179 (660)
Q Consensus 115 p~l~d~~tl~e~L~~L~~--G-----k-------~I~~-PiyD~s~~~rs~~~~~~v~~a~VVIVEGilaL~deLr~llD 179 (660)
+.+++..++.+++..... + + .+.. ...+...+..++++.+++..++.++.++.+++.||+...+|
T Consensus 79 ~~l~~~ltv~enl~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgGqkqRv~lAral~~~p~lllLDEPts~LD 158 (240)
T 2onk_A 79 YALFPHLSVYRNIAYGLRNVERVERDRRVREMAEKLGIAHLLDRKPARLSGGERQRVALARALVIQPRLLLLDEPLSAVD 158 (240)
T ss_dssp CCCCTTSCHHHHHHTTCTTSCHHHHHHHHHHHHHTTTCTTTTTCCGGGSCHHHHHHHHHHHHHTTCCSSBEEESTTSSCC
T ss_pred CccCCCCcHHHHHHHHHHHcCCchHHHHHHHHHHHcCCHHHhcCChhhCCHHHHHHHHHHHHHHcCCCEEEEeCCcccCC
Confidence 999998899999865321 1 0 0111 11233445667778888888999999999999999999999
Q ss_pred EEEEEEcChhHHHHHHHHHHHHH-hCCCH
Q 006117 180 LRVSVTGGVHFDLVKRVFRDIQR-VGQEP 207 (660)
Q Consensus 180 lkIfVdad~dirLiRRI~RDv~e-RGrs~ 207 (660)
. .....+..+.++..+ .|.+.
T Consensus 159 ~-------~~~~~~~~~l~~l~~~~g~tv 180 (240)
T 2onk_A 159 L-------KTKGVLMEELRFVQREFDVPI 180 (240)
T ss_dssp H-------HHHHHHHHHHHHHHHHHTCCE
T ss_pred H-------HHHHHHHHHHHHHHHhcCCEE
Confidence 7 344444555555433 36553
No 42
>2ff7_A Alpha-hemolysin translocation ATP-binding protein HLYB; ABC-transporter, transport protein; HET: ADP; 1.60A {Escherichia coli} SCOP: c.37.1.12 PDB: 2ffb_A* 2fgk_A* 2ffa_A* 2fgj_A* 2pmk_A* 3b5j_A* 1mt0_A 1xef_A*
Probab=99.48 E-value=2.4e-14 Score=145.68 Aligned_cols=136 Identities=17% Similarity=0.294 Sum_probs=105.2
Q ss_pred ceeeeec--CceEEEEecceeeccCCcceEEEEECCCCCcHHHHHHHHHHhC-CCceEEEecCccccc-------ccccc
Q 006117 41 DTLSFEK--GFFIVIRACQLLAQKNHGIILVGVAGPSGAGKTVFTEKVLNFM-PSIAVITMDNYNDSS-------RIIDG 110 (660)
Q Consensus 41 ~~ls~~~--g~~~vL~~Isl~i~~ge~~~IIGI~GpSGSGKSTLak~L~~lL-p~~g~I~lDg~~~~~-------~~i~~ 110 (660)
+++++.+ +...+|+++||.+++|+ ++||+||||||||||+++|++++ |..|.|.++|..... +.+++
T Consensus 11 ~~l~~~y~~~~~~vl~~vsl~i~~Ge---~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~I~i~g~~~~~~~~~~~~~~i~~ 87 (247)
T 2ff7_A 11 RNIRFRYKPDSPVILDNINLSIKQGE---VIGIVGRSGSGKSTLTKLIQRFYIPENGQVLIDGHDLALADPNWLRRQVGV 87 (247)
T ss_dssp EEEEEESSTTSCEEEEEEEEEEETTC---EEEEECSTTSSHHHHHHHHTTSSCCSEEEEEETTEETTTSCHHHHHHHEEE
T ss_pred EEEEEEeCCCCcceeeeeEEEEcCCC---EEEEECCCCCCHHHHHHHHhcCCCCCCcEEEECCEEhhhCCHHHHHhcEEE
Confidence 4556666 35689999999999999 99999999999999999999998 899999999975421 34789
Q ss_pred cCCCCCCCchhhHHHHHHhhhcCc---cc-------cc-------c-----cccccccccccceeeecCCccEEEEecce
Q 006117 111 NFDDPRLTDYDTLLENIRGLKEGK---AV-------QV-------P-----IYDFKSSSRIGYRTLEVPSSRIVIIEGIY 168 (660)
Q Consensus 111 vfq~p~l~d~~tl~e~L~~L~~Gk---~I-------~~-------P-----iyD~s~~~rs~~~~~~v~~a~VVIVEGil 168 (660)
+||++.+|+ .++.+++....... .+ .. | ..+......++++.+++..++.++.++.+
T Consensus 88 v~Q~~~l~~-~tv~enl~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~gl~~~~~~~~~~LSgGq~qRv~iAraL~~~p~l 166 (247)
T 2ff7_A 88 VLQDNVLLN-RSIIDNISLANPGMSVEKVIYAAKLAGAHDFISELREGYNTIVGEQGAGLSGGQRQRIAIARALVNNPKI 166 (247)
T ss_dssp ECSSCCCTT-SBHHHHHTTTCTTCCHHHHHHHHHHHTCHHHHHTSTTGGGCBCSTTTTCCCHHHHHHHHHHHHHTTCCSE
T ss_pred EeCCCcccc-ccHHHHHhccCCCCCHHHHHHHHHHhChHHHHHhCcchhhhhhhCCCCCCCHHHHHHHHHHHHHhcCCCE
Confidence 999999887 59999986432110 00 00 0 01112245667788888888999999999
Q ss_pred eecccccCCCCE
Q 006117 169 ALSEKLRPLIDL 180 (660)
Q Consensus 169 aL~deLr~llDl 180 (660)
++.||+...+|.
T Consensus 167 llLDEPts~LD~ 178 (247)
T 2ff7_A 167 LIFDEATSALDY 178 (247)
T ss_dssp EEECCCCSCCCH
T ss_pred EEEeCCcccCCH
Confidence 999999999997
No 43
>2ixe_A Antigen peptide transporter 1; ABC ATPase, hydrolase; HET: ATP; 2.0A {Rattus norvegicus} PDB: 2ixg_A* 2ixf_A* 1jj7_A*
Probab=99.48 E-value=1.3e-14 Score=149.71 Aligned_cols=137 Identities=16% Similarity=0.182 Sum_probs=106.2
Q ss_pred cceeeeecCc---eEEEEecceeeccCCcceEEEEECCCCCcHHHHHHHHHHhC-CCceEEEecCccccc-------ccc
Q 006117 40 EDTLSFEKGF---FIVIRACQLLAQKNHGIILVGVAGPSGAGKTVFTEKVLNFM-PSIAVITMDNYNDSS-------RII 108 (660)
Q Consensus 40 ~~~ls~~~g~---~~vL~~Isl~i~~ge~~~IIGI~GpSGSGKSTLak~L~~lL-p~~g~I~lDg~~~~~-------~~i 108 (660)
.+++++.++. ..+|++++|.+++|+ +++|+||||||||||+++|++++ |+.|.|.++|..... +.+
T Consensus 19 ~~~l~~~y~~~~~~~vl~~vsl~i~~Ge---~~~i~G~nGsGKSTLlk~l~Gl~~p~~G~I~~~g~~i~~~~~~~~~~~i 95 (271)
T 2ixe_A 19 FQDVSFAYPNHPNVQVLQGLTFTLYPGK---VTALVGPNGSGKSTVAALLQNLYQPTGGKVLLDGEPLVQYDHHYLHTQV 95 (271)
T ss_dssp EEEEEECCTTCTTSCCEEEEEEEECTTC---EEEEECSTTSSHHHHHHHHTTSSCCSEEEEEETTEEGGGBCHHHHHHHE
T ss_pred EEEEEEEeCCCCCceeeEeeEEEECCCC---EEEEECCCCCCHHHHHHHHhcCCCCCCCEEEECCEEcccCCHHHHhccE
Confidence 3455566654 679999999999999 99999999999999999999998 889999999975421 347
Q ss_pred cccCCCCCCCchhhHHHHHHhhhcC--c--ccc--------------cc-----cccccccccccceeeecCCccEEEEe
Q 006117 109 DGNFDDPRLTDYDTLLENIRGLKEG--K--AVQ--------------VP-----IYDFKSSSRIGYRTLEVPSSRIVIIE 165 (660)
Q Consensus 109 ~~vfq~p~l~d~~tl~e~L~~L~~G--k--~I~--------------~P-----iyD~s~~~rs~~~~~~v~~a~VVIVE 165 (660)
+++||++.+|+ .++.+++...... . .+. .| ..+......++++.+++..++.++.+
T Consensus 96 ~~v~Q~~~l~~-~tv~enl~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~gl~~~~~~~~~~LSgGq~QRv~lAraL~~~ 174 (271)
T 2ixe_A 96 AAVGQEPLLFG-RSFRENIAYGLTRTPTMEEITAVAMESGAHDFISGFPQGYDTEVGETGNQLSGGQRQAVALARALIRK 174 (271)
T ss_dssp EEECSSCCCCS-SBHHHHHHTTCSSCCCHHHHHHHHHHHTCHHHHHHSTTGGGSBCCGGGTTSCHHHHHHHHHHHHHTTC
T ss_pred EEEecCCcccc-ccHHHHHhhhcccCChHHHHHHHHHHHhHHHHHHhhhcchhhhhcCCcCCCCHHHHHHHHHHHHHhcC
Confidence 89999999887 4999998653211 0 000 00 11223345667788888889999999
Q ss_pred cceeecccccCCCCE
Q 006117 166 GIYALSEKLRPLIDL 180 (660)
Q Consensus 166 GilaL~deLr~llDl 180 (660)
+.+++.||+...+|.
T Consensus 175 p~lllLDEPts~LD~ 189 (271)
T 2ixe_A 175 PRLLILDNATSALDA 189 (271)
T ss_dssp CSEEEEESTTTTCCH
T ss_pred CCEEEEECCccCCCH
Confidence 999999999999997
No 44
>3nh6_A ATP-binding cassette SUB-family B member 6, mitoc; ABC-transporter, ABCB6, nucleotide binding domain, heme BIOS transport protein; 2.00A {Homo sapiens} PDB: 3nh9_A* 3nha_A* 3nhb_A*
Probab=99.48 E-value=1.5e-14 Score=152.06 Aligned_cols=170 Identities=18% Similarity=0.161 Sum_probs=120.5
Q ss_pred CCCCCCCccCccccchhhhhcccCCCc---eeeeeccceeeeec-CceEEEEecceeeccCCcceEEEEECCCCCcHHHH
Q 006117 7 SGADSPRRRPGLLRDQVQLVKKKDSDR---YEIVPIEDTLSFEK-GFFIVIRACQLLAQKNHGIILVGVAGPSGAGKTVF 82 (660)
Q Consensus 7 ~~~~S~~r~~~ll~~~~~l~~~~~~~~---~ei~~~~~~ls~~~-g~~~vL~~Isl~i~~ge~~~IIGI~GpSGSGKSTL 82 (660)
.+.+|.+|...++...++......... ..-....++++|.+ +...+|++|||.+++|+ ++||+||||||||||
T Consensus 20 ~~~~~~~ri~~~l~~~~~~~~~~~~~~~~~~~~~i~~~~vs~~y~~~~~vL~~isl~i~~Ge---~vaivG~sGsGKSTL 96 (306)
T 3nh6_A 20 HMFIDMENMFDLLKEETEVKDLPGAGPLRFQKGRIEFENVHFSYADGRETLQDVSFTVMPGQ---TLALVGPSGAGKSTI 96 (306)
T ss_dssp CTTCCHHHHHHHHHHHHSCCCCTTCBCCCCSSCCEEEEEEEEESSTTCEEEEEEEEEECTTC---EEEEESSSCHHHHHH
T ss_pred HHHHHHHHHHHHHhCCccccccccccccCCCCCeEEEEEEEEEcCCCCceeeeeeEEEcCCC---EEEEECCCCchHHHH
Confidence 445566666666655544332221100 00112345666766 35679999999999999 999999999999999
Q ss_pred HHHHHHhC-CCceEEEecCccccc-------ccccccCCCCCCCchhhHHHHHHhhhcCc---c-------------c-c
Q 006117 83 TEKVLNFM-PSIAVITMDNYNDSS-------RIIDGNFDDPRLTDYDTLLENIRGLKEGK---A-------------V-Q 137 (660)
Q Consensus 83 ak~L~~lL-p~~g~I~lDg~~~~~-------~~i~~vfq~p~l~d~~tl~e~L~~L~~Gk---~-------------I-~ 137 (660)
+++|++++ |..|.|.+||..... +.++++||+|.+|+ .++.+|+....... . + .
T Consensus 97 l~ll~gl~~p~~G~I~i~G~~i~~~~~~~~r~~i~~v~Q~~~lf~-~Tv~eNi~~~~~~~~~~~~~~~~~~~~l~~~i~~ 175 (306)
T 3nh6_A 97 LRLLFRFYDISSGCIRIDGQDISQVTQASLRSHIGVVPQDTVLFN-DTIADNIRYGRVTAGNDEVEAAAQAAGIHDAIMA 175 (306)
T ss_dssp HHHHTTSSCCSEEEEEETTEETTSBCHHHHHHTEEEECSSCCCCS-EEHHHHHHTTSTTCCHHHHHHHHHHHTCHHHHHH
T ss_pred HHHHHcCCCCCCcEEEECCEEcccCCHHHHhcceEEEecCCccCc-ccHHHHHHhhcccCCHHHHHHHHHHhCcHHHHHh
Confidence 99999998 899999999975432 35899999999986 59999987532110 0 0 0
Q ss_pred cc-ccccc----ccccccceeeecCCccEEEEecceeecccccCCCCE
Q 006117 138 VP-IYDFK----SSSRIGYRTLEVPSSRIVIIEGIYALSEKLRPLIDL 180 (660)
Q Consensus 138 ~P-iyD~s----~~~rs~~~~~~v~~a~VVIVEGilaL~deLr~llDl 180 (660)
.| -|+.. ....++++.+++..++.++-++.+++.||+...+|.
T Consensus 176 lp~gl~t~~~~~g~~LSGGqrQRvaiARAL~~~p~iLlLDEPts~LD~ 223 (306)
T 3nh6_A 176 FPEGYRTQVGERGLKLSGGEKQRVAIARTILKAPGIILLDEATSALDT 223 (306)
T ss_dssp STTGGGCEESTTSBCCCHHHHHHHHHHHHHHHCCSEEEEECCSSCCCH
T ss_pred ccchhhhHhcCCcCCCCHHHHHHHHHHHHHHhCCCEEEEECCcccCCH
Confidence 11 12211 234566788889999999999999999999999997
No 45
>2nq2_C Hypothetical ABC transporter ATP-binding protein HI1470; putative iron chelatin ABC transporter, nucleotide binding domain; 2.40A {Haemophilus influenzae}
Probab=99.46 E-value=3.8e-14 Score=144.75 Aligned_cols=133 Identities=16% Similarity=0.121 Sum_probs=104.9
Q ss_pred ccceeeeecC-ceEEEEecceeeccCCcceEEEEECCCCCcHHHHHHHHHHhC-CCceEEEecCcccccccccccCCCCC
Q 006117 39 IEDTLSFEKG-FFIVIRACQLLAQKNHGIILVGVAGPSGAGKTVFTEKVLNFM-PSIAVITMDNYNDSSRIIDGNFDDPR 116 (660)
Q Consensus 39 ~~~~ls~~~g-~~~vL~~Isl~i~~ge~~~IIGI~GpSGSGKSTLak~L~~lL-p~~g~I~lDg~~~~~~~i~~vfq~p~ 116 (660)
..+++++.++ ...+|+++||.+++|+ ++||+||||||||||+++|++++ |+.|.|.. .+.++++||++.
T Consensus 6 ~i~~l~~~y~~~~~vl~~isl~i~~Ge---~~~l~G~nGsGKSTLl~~l~Gl~~p~~G~I~~------~~~i~~v~q~~~ 76 (253)
T 2nq2_C 6 SVENLGFYYQAENFLFQQLNFDLNKGD---ILAVLGQNGCGKSTLLDLLLGIHRPIQGKIEV------YQSIGFVPQFFS 76 (253)
T ss_dssp EEEEEEEEETTTTEEEEEEEEEEETTC---EEEEECCSSSSHHHHHHHHTTSSCCSEEEEEE------CSCEEEECSCCC
T ss_pred EEeeEEEEeCCCCeEEEEEEEEECCCC---EEEEECCCCCCHHHHHHHHhCCCCCCCcEEEE------eccEEEEcCCCc
Confidence 3455666666 6789999999999999 99999999999999999999998 78999982 245889999999
Q ss_pred CCchhhHHHHHHhhhc---C-----cc------------ccc-ccccccccccccceeeecCCccEEEEecceeeccccc
Q 006117 117 LTDYDTLLENIRGLKE---G-----KA------------VQV-PIYDFKSSSRIGYRTLEVPSSRIVIIEGIYALSEKLR 175 (660)
Q Consensus 117 l~d~~tl~e~L~~L~~---G-----k~------------I~~-PiyD~s~~~rs~~~~~~v~~a~VVIVEGilaL~deLr 175 (660)
+++..++.+++..... + .. +.. ...+...+..++++.+++..+++++.++.+++.||+.
T Consensus 77 ~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgGq~qrv~lAraL~~~p~lllLDEPt 156 (253)
T 2nq2_C 77 SPFAYSVLDIVLMGRSTHINTFAKPKSHDYQVAMQALDYLNLTHLAKREFTSLSGGQRQLILIARAIASECKLILLDEPT 156 (253)
T ss_dssp CSSCCBHHHHHHGGGGGGSCTTCCCCHHHHHHHHHHHHHTTCGGGTTSBGGGSCHHHHHHHHHHHHHHTTCSEEEESSSS
T ss_pred cCCCCCHHHHHHHhhhhhcccccCCCHHHHHHHHHHHHHcCChHHhcCChhhCCHHHHHHHHHHHHHHcCCCEEEEeCCc
Confidence 8888899999875321 1 00 001 1123334456677888888889999999999999999
Q ss_pred CCCCE
Q 006117 176 PLIDL 180 (660)
Q Consensus 176 ~llDl 180 (660)
..+|.
T Consensus 157 s~LD~ 161 (253)
T 2nq2_C 157 SALDL 161 (253)
T ss_dssp TTSCH
T ss_pred ccCCH
Confidence 99997
No 46
>1mv5_A LMRA, multidrug resistance ABC transporter ATP-binding and permease protein; asymmetric dimer, tetramer, P-glycoprotein; HET: ATP ADP; 3.10A {Lactococcus lactis} SCOP: c.37.1.12
Probab=99.44 E-value=1.9e-14 Score=145.65 Aligned_cols=136 Identities=18% Similarity=0.204 Sum_probs=104.1
Q ss_pred ceeeeec-CceEEEEecceeeccCCcceEEEEECCCCCcHHHHHHHHHHhC-CCceEEEecCcccc-------ccccccc
Q 006117 41 DTLSFEK-GFFIVIRACQLLAQKNHGIILVGVAGPSGAGKTVFTEKVLNFM-PSIAVITMDNYNDS-------SRIIDGN 111 (660)
Q Consensus 41 ~~ls~~~-g~~~vL~~Isl~i~~ge~~~IIGI~GpSGSGKSTLak~L~~lL-p~~g~I~lDg~~~~-------~~~i~~v 111 (660)
+++++.+ +...+|+++||.+++|+ +++|+||||||||||+++|++++ |..|.|.++|.... .+.++++
T Consensus 5 ~~l~~~y~~~~~vl~~vsl~i~~Ge---~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~i~~v 81 (243)
T 1mv5_A 5 RHVDFAYDDSEQILRDISFEAQPNS---IIAFAGPSGGGKSTIFSLLERFYQPTAGEITIDGQPIDNISLENWRSQIGFV 81 (243)
T ss_dssp EEEEECSSSSSCSEEEEEEEECTTE---EEEEECCTTSSHHHHHHHHTTSSCCSBSCEEETTEESTTTSCSCCTTTCCEE
T ss_pred EEEEEEeCCCCceEEEeEEEEcCCC---EEEEECCCCCCHHHHHHHHhcCCCCCCcEEEECCEEhhhCCHHHHHhhEEEE
Confidence 4555665 45678999999999999 99999999999999999999998 78999999996432 2357899
Q ss_pred CCCCCCCchhhHHHHHHhh-hcCcc---c-------ccc-cc-----------cccccccccceeeecCCccEEEEecce
Q 006117 112 FDDPRLTDYDTLLENIRGL-KEGKA---V-------QVP-IY-----------DFKSSSRIGYRTLEVPSSRIVIIEGIY 168 (660)
Q Consensus 112 fq~p~l~d~~tl~e~L~~L-~~Gk~---I-------~~P-iy-----------D~s~~~rs~~~~~~v~~a~VVIVEGil 168 (660)
||++.+|+ .++.+++... ..... + ... .. +...+..++++.+++..++.++.++.+
T Consensus 82 ~q~~~l~~-~tv~enl~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~gl~~~~~~~~~~LSgGq~qrv~lAral~~~p~l 160 (243)
T 1mv5_A 82 SQDSAIMA-GTIRENLTYGLEGDYTDEDLWQVLDLAFARSFVENMPDQLNTEVGERGVKISGGQRQRLAIARAFLRNPKI 160 (243)
T ss_dssp CCSSCCCC-EEHHHHTTSCTTSCSCHHHHHHHHHHHTCTTTTTSSTTGGGCEESTTSBCCCHHHHHHHHHHHHHHHCCSE
T ss_pred cCCCcccc-ccHHHHHhhhccCCCCHHHHHHHHHHhChHHHHHhCccchhchhccCcCcCCHHHHHHHHHHHHHhcCCCE
Confidence 99998887 4999998653 11100 0 000 00 111235666788888888899999999
Q ss_pred eecccccCCCCE
Q 006117 169 ALSEKLRPLIDL 180 (660)
Q Consensus 169 aL~deLr~llDl 180 (660)
++.||+...+|.
T Consensus 161 llLDEPts~LD~ 172 (243)
T 1mv5_A 161 LMLDEATASLDS 172 (243)
T ss_dssp EEEECCSCSSCS
T ss_pred EEEECCcccCCH
Confidence 999999999997
No 47
>2qi9_C Vitamin B12 import ATP-binding protein BTUD; inner membrane, membrane, transmembrane, transport, ATP- binding, hydrolase, nucleotide-binding, periplasm; HET: 1PE; 2.60A {Escherichia coli} PDB: 1l7v_C* 4dbl_C
Probab=99.43 E-value=5e-14 Score=143.74 Aligned_cols=152 Identities=9% Similarity=0.057 Sum_probs=112.5
Q ss_pred cceeeeecCceEEEEecceeeccCCcceEEEEECCCCCcHHHHHHHHHHhC-CCceEEEecCccccc-------cccccc
Q 006117 40 EDTLSFEKGFFIVIRACQLLAQKNHGIILVGVAGPSGAGKTVFTEKVLNFM-PSIAVITMDNYNDSS-------RIIDGN 111 (660)
Q Consensus 40 ~~~ls~~~g~~~vL~~Isl~i~~ge~~~IIGI~GpSGSGKSTLak~L~~lL-p~~g~I~lDg~~~~~-------~~i~~v 111 (660)
.+++++. .+|++++|.+++|+ +++|+||||||||||+++|++++ |+ |.|.++|..... +.++++
T Consensus 7 ~~~l~~~----~vl~~vsl~i~~Ge---~~~liG~NGsGKSTLlk~l~Gl~~p~-G~i~~~g~~~~~~~~~~~~~~i~~v 78 (249)
T 2qi9_C 7 LQDVAES----TRLGPLSGEVRAGE---ILHLVGPNGAGKSTLLARMAGMTSGK-GSIQFAGQPLEAWSATKLALHRAYL 78 (249)
T ss_dssp EEEEEET----TTEEEEEEEEETTC---EEEEECCTTSSHHHHHHHHTTSSCCE-EEEEETTEEGGGSCHHHHHHHEEEE
T ss_pred EEceEEE----EEEeeeEEEEcCCC---EEEEECCCCCcHHHHHHHHhCCCCCC-eEEEECCEECCcCCHHHHhceEEEE
Confidence 3445444 47999999999999 99999999999999999999998 78 999999975321 347899
Q ss_pred CCCCCCCchhhHHHHHHhhhc-C--c-c-------ccc-ccccccccccccceeeecCCccEEEEecc-------eeecc
Q 006117 112 FDDPRLTDYDTLLENIRGLKE-G--K-A-------VQV-PIYDFKSSSRIGYRTLEVPSSRIVIIEGI-------YALSE 172 (660)
Q Consensus 112 fq~p~l~d~~tl~e~L~~L~~-G--k-~-------I~~-PiyD~s~~~rs~~~~~~v~~a~VVIVEGi-------laL~d 172 (660)
||++.+++..++.+++..... + . . +.. ...+...+..++++.+++..+++++.++. +++.|
T Consensus 79 ~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgGq~qrv~lAraL~~~p~~~~~~~~lllLD 158 (249)
T 2qi9_C 79 SQQQTPPFATPVWHYLTLHQHDKTRTELLNDVAGALALDDKLGRSTNQLSGGEWQRVRLAAVVLQITPQANPAGQLLLLD 158 (249)
T ss_dssp CSCCCCCTTCBHHHHHHTTCSSTTCHHHHHHHHHHTTCGGGTTSBGGGCCHHHHHHHHHHHHHHHHCTTTCTTCCEEEES
T ss_pred CCCCccCCCCcHHHHHHHhhccCCcHHHHHHHHHHcCChhHhcCChhhCCHHHHHHHHHHHHHHcCCCcCCCCCeEEEEE
Confidence 999998888899999875321 1 0 0 111 11233345566778888888889999999 99999
Q ss_pred cccCCCCEEEEEEcChhHHHHHHHHHHHHHhCCC
Q 006117 173 KLRPLIDLRVSVTGGVHFDLVKRVFRDIQRVGQE 206 (660)
Q Consensus 173 eLr~llDlkIfVdad~dirLiRRI~RDv~eRGrs 206 (660)
|+...+|. .....+..+.+...+.|.+
T Consensus 159 EPts~LD~-------~~~~~l~~~l~~l~~~g~t 185 (249)
T 2qi9_C 159 EPMNSLDV-------AQQSALDKILSALSQQGLA 185 (249)
T ss_dssp STTTTCCH-------HHHHHHHHHHHHHHHTTCE
T ss_pred CCcccCCH-------HHHHHHHHHHHHHHhCCCE
Confidence 99999997 3344444555555433544
No 48
>2zu0_C Probable ATP-dependent transporter SUFC; iron-sulfur cluster, ABC-ATPase, ATP-binding, cytoplasm, nucleotide-binding; HET: MES; 2.20A {Escherichia coli} PDB: 2d3w_A
Probab=99.43 E-value=4.3e-14 Score=145.38 Aligned_cols=139 Identities=12% Similarity=0.102 Sum_probs=105.6
Q ss_pred ccceeeeecCceEEEEecceeeccCCcceEEEEECCCCCcHHHHHHHHHHhC---CCceEEEecCccccc--------cc
Q 006117 39 IEDTLSFEKGFFIVIRACQLLAQKNHGIILVGVAGPSGAGKTVFTEKVLNFM---PSIAVITMDNYNDSS--------RI 107 (660)
Q Consensus 39 ~~~~ls~~~g~~~vL~~Isl~i~~ge~~~IIGI~GpSGSGKSTLak~L~~lL---p~~g~I~lDg~~~~~--------~~ 107 (660)
..+++++.++...+|+++||.+++|+ ++||+||||||||||+++|++++ |+.|.|.++|..... ..
T Consensus 22 ~~~~l~~~y~~~~vl~~vsl~i~~Ge---~~~l~G~NGsGKSTLlk~l~Gl~~~~p~~G~I~~~g~~i~~~~~~~~~~~~ 98 (267)
T 2zu0_C 22 SIKDLHVSVEDKAILRGLSLDVHPGE---VHAIMGPNGSGKSTLSATLAGREDYEVTGGTVEFKGKDLLALSPEDRAGEG 98 (267)
T ss_dssp EEEEEEEEETTEEEEEEEEEEECTTC---EEEEECCTTSSHHHHHHHHHTCTTCEEEEEEEEETTEEGGGSCHHHHHHHT
T ss_pred EEEeEEEEECCEEEEEeeEEEEcCCC---EEEEECCCCCCHHHHHHHHhCCCCCCCCCeEEEECCEECCcCCHHHHhhCC
Confidence 34556666677889999999999999 99999999999999999999983 678999999974321 23
Q ss_pred ccccCCCCCCCchhhHHHHHHhhh------cCc----------c-------cccc--ccccccc-ccccceeeecCCccE
Q 006117 108 IDGNFDDPRLTDYDTLLENIRGLK------EGK----------A-------VQVP--IYDFKSS-SRIGYRTLEVPSSRI 161 (660)
Q Consensus 108 i~~vfq~p~l~d~~tl~e~L~~L~------~Gk----------~-------I~~P--iyD~s~~-~rs~~~~~~v~~a~V 161 (660)
++++||++.+++..++.+++.... .+. . +... ..+.... ..++++.+++..++.
T Consensus 99 i~~v~Q~~~l~~~~tv~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~~~LSgGq~QRv~iAra 178 (267)
T 2zu0_C 99 IFMAFQYPVEIPGVSNQFFLQTALNAVRSYRGQETLDRFDFQDLMEEKIALLKMPEDLLTRSVNVGFSGGEKKRNDILQM 178 (267)
T ss_dssp EEEECSSCCCCTTCBHHHHHHHHHHHHHHGGGCCCCCHHHHHHHHHHHHHHTTCCTTTTTSBTTTTCCHHHHHHHHHHHH
T ss_pred EEEEccCccccccccHHHHHHHHHHhhhhhhccccCCHHHHHHHHHHHHHHcCCChhHhcCCcccCCCHHHHHHHHHHHH
Confidence 678999999888878877764321 010 0 1111 1222233 366778888888999
Q ss_pred EEEecceeecccccCCCCE
Q 006117 162 VIIEGIYALSEKLRPLIDL 180 (660)
Q Consensus 162 VIVEGilaL~deLr~llDl 180 (660)
++.++.+++.||+...+|.
T Consensus 179 L~~~p~lLlLDEPts~LD~ 197 (267)
T 2zu0_C 179 AVLEPELCILDESDSGLDI 197 (267)
T ss_dssp HHHCCSEEEEESTTTTCCH
T ss_pred HHhCCCEEEEeCCCCCCCH
Confidence 9999999999999999996
No 49
>2qt1_A Nicotinamide riboside kinase 1; non-protein kinase, NAD+, NRK1, nicotinic acid riboside kinase activity, NAD biosynthesis; HET: NNR; 1.32A {Homo sapiens} PDB: 2qsy_A* 2qsz_A* 2qt0_A* 2p0e_A* 2qg6_A* 2ql6_A*
Probab=99.40 E-value=3.2e-13 Score=131.52 Aligned_cols=167 Identities=16% Similarity=0.242 Sum_probs=106.2
Q ss_pred eccCCcceEEEEECCCCCcHHHHHHHHHHhCCCceEEEecCcccccccccc------cCCCCCCCchhhHHHHHHhhhcC
Q 006117 60 AQKNHGIILVGVAGPSGAGKTVFTEKVLNFMPSIAVITMDNYNDSSRIIDG------NFDDPRLTDYDTLLENIRGLKEG 133 (660)
Q Consensus 60 i~~ge~~~IIGI~GpSGSGKSTLak~L~~lLp~~g~I~lDg~~~~~~~i~~------vfq~p~l~d~~tl~e~L~~L~~G 133 (660)
++.-.++.+|||+|++||||||+++.|++.++....+..|++......+.. .++.+..++...+.+.+..+..+
T Consensus 15 ~~~~~~~~~i~i~G~~GsGKSTl~~~L~~~~~~~~~i~~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~i~~~l~~ 94 (207)
T 2qt1_A 15 VPRGSKTFIIGISGVTNSGKTTLAKNLQKHLPNCSVISQDDFFKPESEIETDKNGFLQYDVLEALNMEKMMSAISCWMES 94 (207)
T ss_dssp CCCSCCCEEEEEEESTTSSHHHHHHHHHTTSTTEEEEEGGGGBCCGGGSCBCTTSCBCCSSGGGBCHHHHHHHHHHHHHH
T ss_pred cccCCCCeEEEEECCCCCCHHHHHHHHHHhcCCcEEEeCCccccCHhHhhccccCCChhHHHHHhHHHHHHHHHHHHHhC
Confidence 444445569999999999999999999998866888999987543322111 11222334444555555444322
Q ss_pred cccccccccccccccccceeeecCCccEEEEecceeec-ccccCCCCEEEEEEcChhHHHHHHHHHHHHHhCCCHHHHHH
Q 006117 134 KAVQVPIYDFKSSSRIGYRTLEVPSSRIVIIEGIYALS-EKLRPLIDLRVSVTGGVHFDLVKRVFRDIQRVGQEPEEIIH 212 (660)
Q Consensus 134 k~I~~PiyD~s~~~rs~~~~~~v~~a~VVIVEGilaL~-deLr~llDlkIfVdad~dirLiRRI~RDv~eRGrs~E~Vl~ 212 (660)
...|..... .......+++|+||.+++. +.+.+.+|..||++++.++++.|+.. |+++.+++..
T Consensus 95 --~~~~~~~~~--------~~~~~~~~~vi~eg~~~~~~~~~~~~~d~~i~l~~~~~~~~~R~~~-----R~~~~e~~~~ 159 (207)
T 2qt1_A 95 --ARHSVVSTD--------QESAEEIPILIIEGFLLFNYKPLDTIWNRSYFLTIPYEECKRRRST-----RVYQPPDSPG 159 (207)
T ss_dssp --HTTSSCCC-------------CCCCEEEEECTTCTTCGGGTTTCSEEEEEECCHHHHHHHHHH-----SCCSSCCCTT
T ss_pred --CCCCCcCCC--------eeecCCCCEEEEeehHHcCcHHHHHhcCeeEEEECCHHHHHHHHHH-----cCCCccchHH
Confidence 112211111 1113456789999998886 46778899999999999887665433 4555555555
Q ss_pred HHHhccccchhhcccCCcCcCcEE--EeCCC
Q 006117 213 QISETVYPMYKAFIEPDLQTAHIK--IINKF 241 (660)
Q Consensus 213 qy~~~v~P~~~~fIeP~k~~ADiI--I~N~~ 241 (660)
+|...+++.|..+++...+.+|.+ |+|+.
T Consensus 160 ~~~~~~~~~~~~~~~~~~~~~~~v~~Id~~~ 190 (207)
T 2qt1_A 160 YFDGHVWPMYLKYRQEMQDITWEVVYLDGTK 190 (207)
T ss_dssp HHHHTHHHHHHHHHHHGGGCSSCCEEEETTS
T ss_pred HHHHHHhHHHHHHHHHHHhcCCeEEEecCCC
Confidence 666677888777665555666755 65543
No 50
>2pze_A Cystic fibrosis transmembrane conductance regulat; NBD, ABC transporter, CFTR, hydrolase; HET: ATP; 1.70A {Homo sapiens} PDB: 2pzg_A* 2pzf_A* 1ckx_A 1cky_A 1ckw_A 1ckz_A
Probab=99.40 E-value=1.1e-13 Score=138.95 Aligned_cols=131 Identities=18% Similarity=0.117 Sum_probs=101.9
Q ss_pred cceeeeec--CceEEEEecceeeccCCcceEEEEECCCCCcHHHHHHHHHHhC-CCceEEEecCcccccccccccCCCCC
Q 006117 40 EDTLSFEK--GFFIVIRACQLLAQKNHGIILVGVAGPSGAGKTVFTEKVLNFM-PSIAVITMDNYNDSSRIIDGNFDDPR 116 (660)
Q Consensus 40 ~~~ls~~~--g~~~vL~~Isl~i~~ge~~~IIGI~GpSGSGKSTLak~L~~lL-p~~g~I~lDg~~~~~~~i~~vfq~p~ 116 (660)
.+++++.+ +...+|++++|.+++|+ ++||+||||||||||+++|++++ |..|.|.++| .+++++|++.
T Consensus 9 ~~~l~~~y~~~~~~il~~vsl~i~~Ge---~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g------~i~~v~q~~~ 79 (229)
T 2pze_A 9 MENVTAFWEEGGTPVLKDINFKIERGQ---LLAVAGSTGAGKTSLLMMIMGELEPSEGKIKHSG------RISFCSQFSW 79 (229)
T ss_dssp EEEEEECSSTTSCCSEEEEEEEEETTC---EEEEECCTTSSHHHHHHHHTTSSCCSEEEEEECS------CEEEECSSCC
T ss_pred EEEEEEEeCCCCceeeeeeEEEEcCCC---EEEEECCCCCCHHHHHHHHhCCCcCCccEEEECC------EEEEEecCCc
Confidence 45556665 34679999999999999 99999999999999999999998 8999999998 3789999998
Q ss_pred CCchhhHHHHHHhhhcCc-----------cc----c-ccc-----ccccccccccceeeecCCccEEEEecceeeccccc
Q 006117 117 LTDYDTLLENIRGLKEGK-----------AV----Q-VPI-----YDFKSSSRIGYRTLEVPSSRIVIIEGIYALSEKLR 175 (660)
Q Consensus 117 l~d~~tl~e~L~~L~~Gk-----------~I----~-~Pi-----yD~s~~~rs~~~~~~v~~a~VVIVEGilaL~deLr 175 (660)
+++. ++.+++....... .+ . .|. .+......++++.+++..++.++.++.+++.||+.
T Consensus 80 ~~~~-tv~enl~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~LSgGqkqrv~lAral~~~p~lllLDEPt 158 (229)
T 2pze_A 80 IMPG-TIKENIIFGVSYDEYRYRSVIKACQLEEDISKFAEKDNIVLGEGGITLSGGQRARISLARAVYKDADLYLLDSPF 158 (229)
T ss_dssp CCSB-CHHHHHHTTSCCCHHHHHHHHHHTTCHHHHTTSTTGGGSCBCTTCTTSCHHHHHHHHHHHHHHSCCSEEEEESTT
T ss_pred ccCC-CHHHHhhccCCcChHHHHHHHHHhCcHHHHHhCcccccccccCCCCcCCHHHHHHHHHHHHHhcCCCEEEEECcc
Confidence 8885 9999986421100 00 0 011 01112455667888888889999999999999999
Q ss_pred CCCCE
Q 006117 176 PLIDL 180 (660)
Q Consensus 176 ~llDl 180 (660)
..+|.
T Consensus 159 s~LD~ 163 (229)
T 2pze_A 159 GYLDV 163 (229)
T ss_dssp TTSCH
T ss_pred cCCCH
Confidence 99996
No 51
>3gd7_A Fusion complex of cystic fibrosis transmembrane conductance regulator, residues 1193-1427...; CFTR, ABC transporter, nucleotide binding domain, NBD; HET: B44; 2.70A {Homo sapiens}
Probab=99.40 E-value=2.7e-14 Score=154.80 Aligned_cols=136 Identities=13% Similarity=0.120 Sum_probs=105.2
Q ss_pred ceeeeec--CceEEEEecceeeccCCcceEEEEECCCCCcHHHHHHHHHHhCCCceEEEecCcccc-------ccccccc
Q 006117 41 DTLSFEK--GFFIVIRACQLLAQKNHGIILVGVAGPSGAGKTVFTEKVLNFMPSIAVITMDNYNDS-------SRIIDGN 111 (660)
Q Consensus 41 ~~ls~~~--g~~~vL~~Isl~i~~ge~~~IIGI~GpSGSGKSTLak~L~~lLp~~g~I~lDg~~~~-------~~~i~~v 111 (660)
+++++.+ +...+|+++||.+++|+ +++|+||||||||||+++|+++++..|.|.++|.... .+.++++
T Consensus 23 ~~l~~~y~~~~~~~L~~vsl~i~~Ge---~~~llGpsGsGKSTLLr~iaGl~~~~G~I~i~G~~i~~~~~~~~rr~ig~v 99 (390)
T 3gd7_A 23 KDLTAKYTEGGNAILENISFSISPGQ---RVGLLGRTGSGKSTLLSAFLRLLNTEGEIQIDGVSWDSITLEQWRKAFGVI 99 (390)
T ss_dssp EEEEEESSSSSCCSEEEEEEEECTTC---EEEEEESTTSSHHHHHHHHHTCSEEEEEEEESSCBTTSSCHHHHHHTEEEE
T ss_pred EEEEEEecCCCeEEeeceeEEEcCCC---EEEEECCCCChHHHHHHHHhCCCCCCeEEEECCEECCcCChHHHhCCEEEE
Confidence 4555555 56789999999999999 9999999999999999999999877899999997542 1468899
Q ss_pred CCCCCCCchhhHHHHHHhhhcCc---------cccc-ccccccccc-----------cccceeeecCCccEEEEecceee
Q 006117 112 FDDPRLTDYDTLLENIRGLKEGK---------AVQV-PIYDFKSSS-----------RIGYRTLEVPSSRIVIIEGIYAL 170 (660)
Q Consensus 112 fq~p~l~d~~tl~e~L~~L~~Gk---------~I~~-PiyD~s~~~-----------rs~~~~~~v~~a~VVIVEGilaL 170 (660)
||++.+|+ .++.+|+....... .+.. ...+...+. .++++.+++..++.++.++.+++
T Consensus 100 ~Q~~~lf~-~tv~enl~~~~~~~~~~v~~~l~~~~L~~~~~~~p~~l~~~i~~~g~~LSGGqrQRvalARAL~~~P~lLL 178 (390)
T 3gd7_A 100 PQKVFIFS-GTFRKNLDPNAAHSDQEIWKVADEVGLRSVIEQFPGKLDFVLVDGGCVLSHGHKQLMCLARSVLSKAKILL 178 (390)
T ss_dssp SCCCCCCS-EEHHHHHCTTCCSCHHHHHHHHHHTTCHHHHTTSTTGGGCEECTTTTTSCHHHHHHHHHHHHHHTTCCEEE
T ss_pred cCCcccCc-cCHHHHhhhccccCHHHHHHHHHHhCCHHHHhhcccccccccccccccCCHHHHHHHHHHHHHhcCCCEEE
Confidence 99999997 59999985321100 0001 111222222 57788888999999999999999
Q ss_pred cccccCCCCE
Q 006117 171 SEKLRPLIDL 180 (660)
Q Consensus 171 ~deLr~llDl 180 (660)
.||+...+|.
T Consensus 179 LDEPts~LD~ 188 (390)
T 3gd7_A 179 LDEPSAHLDP 188 (390)
T ss_dssp EESHHHHSCH
T ss_pred EeCCccCCCH
Confidence 9999999996
No 52
>2ghi_A Transport protein; multidrug resistance protein, MDR, structural genomics, structural genomics consortium, SGC; 2.20A {Plasmodium yoelii yoelii str}
Probab=99.38 E-value=1.4e-13 Score=141.08 Aligned_cols=136 Identities=17% Similarity=0.203 Sum_probs=103.4
Q ss_pred ceeeeecCc---eEEEEecceeeccCCcceEEEEECCCCCcHHHHHHHHHHhCCCceEEEecCcccc-------cccccc
Q 006117 41 DTLSFEKGF---FIVIRACQLLAQKNHGIILVGVAGPSGAGKTVFTEKVLNFMPSIAVITMDNYNDS-------SRIIDG 110 (660)
Q Consensus 41 ~~ls~~~g~---~~vL~~Isl~i~~ge~~~IIGI~GpSGSGKSTLak~L~~lLp~~g~I~lDg~~~~-------~~~i~~ 110 (660)
+++++.++. ..+|++++|.+++|+ ++||+||||||||||+++|+++++..|.|.++|.... .+.+++
T Consensus 21 ~~l~~~y~~~~~~~vl~~vsl~i~~Ge---~~~i~G~nGsGKSTLl~~l~Gl~~~~G~I~i~g~~i~~~~~~~~~~~i~~ 97 (260)
T 2ghi_A 21 SDVNFSYPKQTNHRTLKSINFFIPSGT---TCALVGHTGSGKSTIAKLLYRFYDAEGDIKIGGKNVNKYNRNSIRSIIGI 97 (260)
T ss_dssp EEEEECCTTCCSSCSEEEEEEEECTTC---EEEEECSTTSSHHHHHHHHTTSSCCEEEEEETTEEGGGBCHHHHHTTEEE
T ss_pred EEEEEEeCCCCcCceeEeeEEEECCCC---EEEEECCCCCCHHHHHHHHhccCCCCeEEEECCEEhhhcCHHHHhccEEE
Confidence 445555543 368999999999999 9999999999999999999999844899999997532 135789
Q ss_pred cCCCCCCCchhhHHHHHHhhhcCc---cc-------c-------ccc-c----cccccccccceeeecCCccEEEEecce
Q 006117 111 NFDDPRLTDYDTLLENIRGLKEGK---AV-------Q-------VPI-Y----DFKSSSRIGYRTLEVPSSRIVIIEGIY 168 (660)
Q Consensus 111 vfq~p~l~d~~tl~e~L~~L~~Gk---~I-------~-------~Pi-y----D~s~~~rs~~~~~~v~~a~VVIVEGil 168 (660)
+||++.+|+ .++.+++....... .+ . .|. + +......++++.+++..++.++.++.+
T Consensus 98 v~Q~~~l~~-~tv~enl~~~~~~~~~~~~~~~l~~~~l~~~~~~l~~~~~~~~~~~~~~LSgGqkqRv~lAraL~~~p~l 176 (260)
T 2ghi_A 98 VPQDTILFN-ETIKYNILYGKLDATDEEVIKATKSAQLYDFIEALPKKWDTIVGNKGMKLSGGERQRIAIARCLLKDPKI 176 (260)
T ss_dssp ECSSCCCCS-EEHHHHHHTTCTTCCHHHHHHHHHHTTCHHHHHTSTTGGGCEESSSSBCCCHHHHHHHHHHHHHHHCCSE
T ss_pred EcCCCcccc-cCHHHHHhccCCCCCHHHHHHHHHHhCCHHHHHhccccccccccCCcCcCCHHHHHHHHHHHHHHcCCCE
Confidence 999999886 59999986421110 00 0 110 1 112345667788888888999999999
Q ss_pred eecccccCCCCE
Q 006117 169 ALSEKLRPLIDL 180 (660)
Q Consensus 169 aL~deLr~llDl 180 (660)
++.||+...+|.
T Consensus 177 llLDEPts~LD~ 188 (260)
T 2ghi_A 177 VIFDEATSSLDS 188 (260)
T ss_dssp EEEECCCCTTCH
T ss_pred EEEECccccCCH
Confidence 999999999997
No 53
>2cbz_A Multidrug resistance-associated protein 1; ABC proteins, MRP1/ABCC1, nucleotide-binding domain, ATP- binding, hydrolysis, transport; HET: ATP; 1.5A {Homo sapiens}
Probab=99.37 E-value=8.4e-14 Score=140.69 Aligned_cols=131 Identities=18% Similarity=0.127 Sum_probs=101.5
Q ss_pred cceeeeecC--ceEEEEecceeeccCCcceEEEEECCCCCcHHHHHHHHHHhC-CCceEEEecCcccccccccccCCCCC
Q 006117 40 EDTLSFEKG--FFIVIRACQLLAQKNHGIILVGVAGPSGAGKTVFTEKVLNFM-PSIAVITMDNYNDSSRIIDGNFDDPR 116 (660)
Q Consensus 40 ~~~ls~~~g--~~~vL~~Isl~i~~ge~~~IIGI~GpSGSGKSTLak~L~~lL-p~~g~I~lDg~~~~~~~i~~vfq~p~ 116 (660)
.+++++.++ ...+|+++||.+++|+ ++||+||||||||||+++|++++ |..|.|.++| .++++||++.
T Consensus 6 ~~~l~~~y~~~~~~vl~~vsl~i~~Ge---~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~I~~~g------~i~~v~Q~~~ 76 (237)
T 2cbz_A 6 VRNATFTWARSDPPTLNGITFSIPEGA---LVAVVGQVGCGKSSLLSALLAEMDKVEGHVAIKG------SVAYVPQQAW 76 (237)
T ss_dssp EEEEEEESCTTSCCSEEEEEEEECTTC---EEEEECSTTSSHHHHHHHHTTCSEEEEEEEEECS------CEEEECSSCC
T ss_pred EEEEEEEeCCCCCceeeeeEEEECCCC---EEEEECCCCCCHHHHHHHHhcCCCCCCceEEECC------EEEEEcCCCc
Confidence 345556655 4678999999999999 99999999999999999999999 7899999998 3789999987
Q ss_pred CCchhhHHHHHHhhhc--Ccc-------------ccc-c-----cccccccccccceeeecCCccEEEEecceeeccccc
Q 006117 117 LTDYDTLLENIRGLKE--GKA-------------VQV-P-----IYDFKSSSRIGYRTLEVPSSRIVIIEGIYALSEKLR 175 (660)
Q Consensus 117 l~d~~tl~e~L~~L~~--Gk~-------------I~~-P-----iyD~s~~~rs~~~~~~v~~a~VVIVEGilaL~deLr 175 (660)
++ ..++.+++..... ... +.. | ..+......++++.+++..++.++.++.+++.||+.
T Consensus 77 ~~-~~tv~enl~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~LSgGqkqRv~lAraL~~~p~lllLDEPt 155 (237)
T 2cbz_A 77 IQ-NDSLRENILFGCQLEEPYYRSVIQACALLPDLEILPSGDRTEIGEKGVNLSGGQKQRVSLARAVYSNADIYLFDDPL 155 (237)
T ss_dssp CC-SEEHHHHHHTTSCCCTTHHHHHHHHTTCHHHHTTSTTGGGSEESTTSBCCCHHHHHHHHHHHHHHHCCSEEEEESTT
T ss_pred CC-CcCHHHHhhCccccCHHHHHHHHHHHhhHHHHHhccccccccccCCCCCCCHHHHHHHHHHHHHhcCCCEEEEeCcc
Confidence 54 6789999865321 000 000 1 012233456677888888889999999999999999
Q ss_pred CCCCE
Q 006117 176 PLIDL 180 (660)
Q Consensus 176 ~llDl 180 (660)
..+|.
T Consensus 156 s~LD~ 160 (237)
T 2cbz_A 156 SAVDA 160 (237)
T ss_dssp TTSCH
T ss_pred cccCH
Confidence 99996
No 54
>2pjz_A Hypothetical protein ST1066; ATP binding protein, structural genomics, NPPSFA; 1.90A {Sulfolobus tokodaii}
Probab=99.35 E-value=5.6e-13 Score=137.06 Aligned_cols=134 Identities=14% Similarity=0.082 Sum_probs=103.3
Q ss_pred ceeeeecCc----eEEEEecceeeccCCcceEEEEECCCCCcHHHHHHHHHHhCCCceEEEecCcccc----ccccc-cc
Q 006117 41 DTLSFEKGF----FIVIRACQLLAQKNHGIILVGVAGPSGAGKTVFTEKVLNFMPSIAVITMDNYNDS----SRIID-GN 111 (660)
Q Consensus 41 ~~ls~~~g~----~~vL~~Isl~i~~ge~~~IIGI~GpSGSGKSTLak~L~~lLp~~g~I~lDg~~~~----~~~i~-~v 111 (660)
+++++.++. ..++++++|.++ |+ +++|+||||||||||+++|++++|+.|.|.++|.... .+.++ ++
T Consensus 5 ~~l~~~y~~~~~~~~il~~vsl~i~-Ge---~~~i~G~NGsGKSTLlk~l~Gl~p~~G~I~~~g~~~~~~~~~~~i~~~v 80 (263)
T 2pjz_A 5 KNVGITLSGKGYERFSLENINLEVN-GE---KVIILGPNGSGKTTLLRAISGLLPYSGNIFINGMEVRKIRNYIRYSTNL 80 (263)
T ss_dssp EEEEEEEEEETTEEEEEEEEEEEEC-SS---EEEEECCTTSSHHHHHHHHTTSSCCEEEEEETTEEGGGCSCCTTEEECC
T ss_pred EEEEEEeCCCCccceeEEeeeEEEC-CE---EEEEECCCCCCHHHHHHHHhCCCCCCcEEEECCEECcchHHhhheEEEe
Confidence 344455554 679999999999 99 9999999999999999999998888999999986432 34578 99
Q ss_pred CCCCCCCchhhHHHHHHhhhc--Cc----------cccc--ccccccccccccceeeecCCccEEEEecceeecccccCC
Q 006117 112 FDDPRLTDYDTLLENIRGLKE--GK----------AVQV--PIYDFKSSSRIGYRTLEVPSSRIVIIEGIYALSEKLRPL 177 (660)
Q Consensus 112 fq~p~l~d~~tl~e~L~~L~~--Gk----------~I~~--PiyD~s~~~rs~~~~~~v~~a~VVIVEGilaL~deLr~l 177 (660)
||++.+ ..++.+++..... .. .... ...+...+..++++.+++..++.++.++.+++.||+...
T Consensus 81 ~Q~~~l--~~tv~enl~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~~LSgGqkqRv~lAraL~~~p~lllLDEPts~ 158 (263)
T 2pjz_A 81 PEAYEI--GVTVNDIVYLYEELKGLDRDLFLEMLKALKLGEEILRRKLYKLSAGQSVLVRTSLALASQPEIVGLDEPFEN 158 (263)
T ss_dssp GGGSCT--TSBHHHHHHHHHHHTCCCHHHHHHHHHHTTCCGGGGGSBGGGSCHHHHHHHHHHHHHHTCCSEEEEECTTTT
T ss_pred CCCCcc--CCcHHHHHHHhhhhcchHHHHHHHHHHHcCCChhHhcCChhhCCHHHHHHHHHHHHHHhCCCEEEEECCccc
Confidence 999877 6789888865321 10 0111 112333455667788888888999999999999999999
Q ss_pred CCE
Q 006117 178 IDL 180 (660)
Q Consensus 178 lDl 180 (660)
+|.
T Consensus 159 LD~ 161 (263)
T 2pjz_A 159 VDA 161 (263)
T ss_dssp CCH
T ss_pred cCH
Confidence 996
No 55
>3b60_A Lipid A export ATP-binding/permease protein MSBA; ABC transporter, lipid flippase, hydrolase, inner membrane, lipid transport, membrane; HET: ANP; 3.70A {Salmonella typhimurium} SCOP: c.37.1.12 f.37.1.1 PDB: 3b5y_A* 3b5z_A* 3b5w_A
Probab=99.34 E-value=7.3e-13 Score=149.75 Aligned_cols=137 Identities=16% Similarity=0.155 Sum_probs=106.7
Q ss_pred cceeeeecCc--eEEEEecceeeccCCcceEEEEECCCCCcHHHHHHHHHHhC-CCceEEEecCccccc-------cccc
Q 006117 40 EDTLSFEKGF--FIVIRACQLLAQKNHGIILVGVAGPSGAGKTVFTEKVLNFM-PSIAVITMDNYNDSS-------RIID 109 (660)
Q Consensus 40 ~~~ls~~~g~--~~vL~~Isl~i~~ge~~~IIGI~GpSGSGKSTLak~L~~lL-p~~g~I~lDg~~~~~-------~~i~ 109 (660)
.+++++.++. ..+|++++|.+++|+ ++||+||||||||||+++|++++ |+.|.|.+||.+... +.++
T Consensus 344 ~~~v~~~y~~~~~~~l~~v~~~i~~G~---~~~ivG~sGsGKSTLl~~l~g~~~p~~G~i~~~g~~~~~~~~~~~~~~i~ 420 (582)
T 3b60_A 344 FRNVTFTYPGREVPALRNINLKIPAGK---TVALVGRSGSGKSTIASLITRFYDIDEGHILMDGHDLREYTLASLRNQVA 420 (582)
T ss_dssp EEEEEECSSSSSCCSEEEEEEEECTTC---EEEEEECTTSSHHHHHHHHTTTTCCSEEEEEETTEETTTBCHHHHHHTEE
T ss_pred EEEEEEEcCCCCCccccceeEEEcCCC---EEEEECCCCCCHHHHHHHHhhccCCCCCeEEECCEEccccCHHHHHhhCe
Confidence 3556666652 579999999999999 99999999999999999999998 899999999975432 3578
Q ss_pred ccCCCCCCCchhhHHHHHHhhh-cCc---cc--------------ccc-ccccc----ccccccceeeecCCccEEEEec
Q 006117 110 GNFDDPRLTDYDTLLENIRGLK-EGK---AV--------------QVP-IYDFK----SSSRIGYRTLEVPSSRIVIIEG 166 (660)
Q Consensus 110 ~vfq~p~l~d~~tl~e~L~~L~-~Gk---~I--------------~~P-iyD~s----~~~rs~~~~~~v~~a~VVIVEG 166 (660)
+++|+|.+|+. ++.+|+.... ... .+ ..| -++.. ....++++.+++..++.++-++
T Consensus 421 ~v~Q~~~l~~~-tv~eni~~~~~~~~~~~~~~~~l~~~~l~~~~~~~p~g~~~~~~~~~~~LSgGq~qrl~iAral~~~p 499 (582)
T 3b60_A 421 LVSQNVHLFND-TVANNIAYARTEEYSREQIEEAARMAYAMDFINKMDNGLDTIIGENGVLLSGGQRQRIAIARALLRDS 499 (582)
T ss_dssp EECSSCCCCSS-BHHHHHHTTTTSCCCHHHHHHHHHTTTCHHHHHHSTTGGGSBCCTTSCSSCHHHHHHHHHHHHHHHCC
T ss_pred EEccCCcCCCC-CHHHHHhccCCCCCCHHHHHHHHHHcCCHHHHHhccccccccccCCCCCCCHHHHHHHHHHHHHHhCC
Confidence 99999999984 9999997633 110 00 001 11111 2345667888888999999999
Q ss_pred ceeecccccCCCCE
Q 006117 167 IYALSEKLRPLIDL 180 (660)
Q Consensus 167 ilaL~deLr~llDl 180 (660)
.+++.||+...+|.
T Consensus 500 ~illlDEpts~LD~ 513 (582)
T 3b60_A 500 PILILDEATSALDT 513 (582)
T ss_dssp SEEEEETTTSSCCH
T ss_pred CEEEEECccccCCH
Confidence 99999999999997
No 56
>3b5x_A Lipid A export ATP-binding/permease protein MSBA; ABC transporter, lipid flippase, hydrolase, inner membrane, lipid transport, membrane; 5.50A {Vibrio cholerae}
Probab=99.31 E-value=6.2e-13 Score=150.33 Aligned_cols=137 Identities=17% Similarity=0.192 Sum_probs=106.3
Q ss_pred cceeeeecCc--eEEEEecceeeccCCcceEEEEECCCCCcHHHHHHHHHHhC-CCceEEEecCcccc-------ccccc
Q 006117 40 EDTLSFEKGF--FIVIRACQLLAQKNHGIILVGVAGPSGAGKTVFTEKVLNFM-PSIAVITMDNYNDS-------SRIID 109 (660)
Q Consensus 40 ~~~ls~~~g~--~~vL~~Isl~i~~ge~~~IIGI~GpSGSGKSTLak~L~~lL-p~~g~I~lDg~~~~-------~~~i~ 109 (660)
.+++++.++. ..+|++++|.+++|+ ++||+||||||||||+++|++++ |+.|.|.+||.+.. .+.++
T Consensus 344 ~~~v~~~y~~~~~~~l~~i~l~i~~G~---~~~ivG~sGsGKSTll~~l~g~~~p~~G~i~~~g~~~~~~~~~~~~~~i~ 420 (582)
T 3b5x_A 344 VKDVTFTYQGKEKPALSHVSFSIPQGK---TVALVGRSGSGKSTIANLFTRFYDVDSGSICLDGHDVRDYKLTNLRRHFA 420 (582)
T ss_pred EEEEEEEcCCCCccccccceEEECCCC---EEEEECCCCCCHHHHHHHHhcCCCCCCCEEEECCEEhhhCCHHHHhcCeE
Confidence 3455666653 679999999999999 99999999999999999999998 89999999997532 24588
Q ss_pred ccCCCCCCCchhhHHHHHHhhh-cCc---cc--------------ccc-cccc----cccccccceeeecCCccEEEEec
Q 006117 110 GNFDDPRLTDYDTLLENIRGLK-EGK---AV--------------QVP-IYDF----KSSSRIGYRTLEVPSSRIVIIEG 166 (660)
Q Consensus 110 ~vfq~p~l~d~~tl~e~L~~L~-~Gk---~I--------------~~P-iyD~----s~~~rs~~~~~~v~~a~VVIVEG 166 (660)
+++|+|.+|+ .++.+|+.... ... .+ ..| .|+. .....++++.+++..++.++-++
T Consensus 421 ~v~Q~~~l~~-~tv~eni~~~~~~~~~~~~~~~~~~~~~l~~~~~~~p~g~~t~~~~~~~~LSgGq~qr~~iAral~~~p 499 (582)
T 3b5x_A 421 LVSQNVHLFN-DTIANNIAYAAEGEYTREQIEQAARQAHAMEFIENMPQGLDTVIGENGTSLSGGQRQRVAIARALLRDA 499 (582)
T ss_pred EEcCCCcccc-ccHHHHHhccCCCCCCHHHHHHHHHHCCCHHHHHhCcccccchhcCCCCcCCHHHHHHHHHHHHHHcCC
Confidence 9999999987 49999997532 110 00 001 1111 11345677888899999999999
Q ss_pred ceeecccccCCCCE
Q 006117 167 IYALSEKLRPLIDL 180 (660)
Q Consensus 167 ilaL~deLr~llDl 180 (660)
.+++.||+...+|.
T Consensus 500 ~illlDEpts~LD~ 513 (582)
T 3b5x_A 500 PVLILDEATSALDT 513 (582)
T ss_pred CEEEEECccccCCH
Confidence 99999999999997
No 57
>4a82_A Cystic fibrosis transmembrane conductance regulat; CFTR, ION channel, transport protein, casse protein; 2.00A {Homo sapiens} PDB: 2onj_A* 2hyd_A
Probab=99.30 E-value=8.7e-13 Score=149.11 Aligned_cols=137 Identities=22% Similarity=0.232 Sum_probs=106.2
Q ss_pred cceeeeecC--ceEEEEecceeeccCCcceEEEEECCCCCcHHHHHHHHHHhC-CCceEEEecCccccc-------cccc
Q 006117 40 EDTLSFEKG--FFIVIRACQLLAQKNHGIILVGVAGPSGAGKTVFTEKVLNFM-PSIAVITMDNYNDSS-------RIID 109 (660)
Q Consensus 40 ~~~ls~~~g--~~~vL~~Isl~i~~ge~~~IIGI~GpSGSGKSTLak~L~~lL-p~~g~I~lDg~~~~~-------~~i~ 109 (660)
.+++++.++ ...+|+++||.+++|+ ++||+||||||||||+++|++++ |..|.|.+||.+... +.++
T Consensus 342 ~~~v~~~y~~~~~~~l~~isl~i~~G~---~~~ivG~sGsGKSTll~~l~g~~~p~~G~i~~~g~~~~~~~~~~~r~~i~ 418 (578)
T 4a82_A 342 IDHVSFQYNDNEAPILKDINLSIEKGE---TVAFVGMSGGGKSTLINLIPRFYDVTSGQILIDGHNIKDFLTGSLRNQIG 418 (578)
T ss_dssp EEEEEECSCSSSCCSEEEEEEEECTTC---EEEEECSTTSSHHHHHTTTTTSSCCSEEEEEETTEEGGGSCHHHHHHTEE
T ss_pred EEEEEEEcCCCCCcceeeeEEEECCCC---EEEEECCCCChHHHHHHHHhcCCCCCCcEEEECCEEhhhCCHHHHhhheE
Confidence 355556553 4579999999999999 99999999999999999999998 899999999975432 3589
Q ss_pred ccCCCCCCCchhhHHHHHHhhhcCc---c-------------c-ccc-cccccc----cccccceeeecCCccEEEEecc
Q 006117 110 GNFDDPRLTDYDTLLENIRGLKEGK---A-------------V-QVP-IYDFKS----SSRIGYRTLEVPSSRIVIIEGI 167 (660)
Q Consensus 110 ~vfq~p~l~d~~tl~e~L~~L~~Gk---~-------------I-~~P-iyD~s~----~~rs~~~~~~v~~a~VVIVEGi 167 (660)
+++|+|.+|+. ++.+|+....... . + ..| .++... ...++++.+++..++.++-++.
T Consensus 419 ~v~Q~~~l~~~-tv~eni~~~~~~~~~~~~~~~~~~~~~~~~~~~lp~g~~t~~~~~g~~LSgGq~Qrv~lAral~~~p~ 497 (578)
T 4a82_A 419 LVQQDNILFSD-TVKENILLGRPTATDEEVVEAAKMANAHDFIMNLPQGYDTEVGERGVKLSGGQKQRLSIARIFLNNPP 497 (578)
T ss_dssp EECSSCCCCSS-BHHHHHGGGCSSCCHHHHHHHHHHTTCHHHHHTSTTGGGCBCCGGGTTSCHHHHHHHHHHHHHHHCCS
T ss_pred EEeCCCccCcc-cHHHHHhcCCCCCCHHHHHHHHHHhCcHHHHHhCcchhhhhhccCCCcCCHHHHHHHHHHHHHHcCCC
Confidence 99999999975 9999986422110 0 0 112 122222 2456778888999999999999
Q ss_pred eeecccccCCCCE
Q 006117 168 YALSEKLRPLIDL 180 (660)
Q Consensus 168 laL~deLr~llDl 180 (660)
+++.||+...+|.
T Consensus 498 illlDEpts~LD~ 510 (578)
T 4a82_A 498 ILILDEATSALDL 510 (578)
T ss_dssp EEEEESTTTTCCH
T ss_pred EEEEECccccCCH
Confidence 9999999999996
No 58
>2grj_A Dephospho-COA kinase; TM1387, EC 2.7.1.24, dephosphocoenzyme kinase, structural genomics, joint center for structural GE JCSG; HET: ADP COD; 2.60A {Thermotoga maritima}
Probab=99.29 E-value=1.7e-12 Score=127.46 Aligned_cols=149 Identities=17% Similarity=0.216 Sum_probs=100.7
Q ss_pred cceEEEEECCCCCcHHHHHHHHHHhCCCceEEEecCccccc---------cccc-ccCCCCCCCchhhHHHHHH----hh
Q 006117 65 GIILVGVAGPSGAGKTVFTEKVLNFMPSIAVITMDNYNDSS---------RIID-GNFDDPRLTDYDTLLENIR----GL 130 (660)
Q Consensus 65 ~~~IIGI~GpSGSGKSTLak~L~~lLp~~g~I~lDg~~~~~---------~~i~-~vfq~p~l~d~~tl~e~L~----~L 130 (660)
...+|||+|++||||||+++.|+..+ +...|..|.+.... ...+ .+++ +..+|...+.+.+. .+
T Consensus 11 ~~~iIgltG~~GSGKSTva~~L~~~l-g~~vid~D~~~~~~~~~~~~~i~~~fG~~~~~-~g~ldr~~L~~~vF~~~~~~ 88 (192)
T 2grj_A 11 HHMVIGVTGKIGTGKSTVCEILKNKY-GAHVVNVDRIGHEVLEEVKEKLVELFGGSVLE-DGKVNRKKLAGIVFESRENL 88 (192)
T ss_dssp CEEEEEEECSTTSSHHHHHHHHHHHH-CCEEEEHHHHHHHHHHHTHHHHHHHHCGGGBS-SSSBCHHHHHHHHTTCHHHH
T ss_pred cceEEEEECCCCCCHHHHHHHHHHhc-CCEEEECcHHHHHHHHHHHHHHHHHhChhhcC-CCCcCHHHHHHHHhCCHHHH
Confidence 34699999999999999999999986 56788888863211 0111 1233 45566665655332 22
Q ss_pred hcCcccccccccccccccccceeeecCCccEEEEecceeecccccCCCCEEEEEEcChhHHHHHHHHHHHHHhCCCHHHH
Q 006117 131 KEGKAVQVPIYDFKSSSRIGYRTLEVPSSRIVIIEGIYALSEKLRPLIDLRVSVTGGVHFDLVKRVFRDIQRVGQEPEEI 210 (660)
Q Consensus 131 ~~Gk~I~~PiyD~s~~~rs~~~~~~v~~a~VVIVEGilaL~deLr~llDlkIfVdad~dirLiRRI~RDv~eRGrs~E~V 210 (660)
...+.+..|.+......+.. ....++++|+++++...+...+|.+|||++|.++++.|. +
T Consensus 89 ~~l~~i~hP~i~~~~~~~~~------~~~~~vv~d~pll~e~~~~~~~d~vi~v~a~~e~r~~Rl--------------i 148 (192)
T 2grj_A 89 KKLELLVHPLMKKRVQEIIN------KTSGLIVIEAALLKRMGLDQLCDHVITVVASRETILKRN--------------R 148 (192)
T ss_dssp HHHHHHHHHHHHHHHHHHHH------TCCEEEEEECTTTTTTTGGGGCSEEEEEECCHHHHHHHC--------------S
T ss_pred HHHHhhhCHHHHHHHHHHHH------HcCCEEEEEEeceeecChHHhCCEEEEEECCHHHHHHHH--------------H
Confidence 33345667766655433221 014689999999988788889999999999999977665 1
Q ss_pred HHHHHhccccchhhcccCCcCcCcEEEeCCCCC
Q 006117 211 IHQISETVYPMYKAFIEPDLQTAHIKIINKFNP 243 (660)
Q Consensus 211 l~qy~~~v~P~~~~fIeP~k~~ADiII~N~~~p 243 (660)
..|+ |. |.++.++.||+||+|+.++
T Consensus 149 ~~q~-----~~---~~~~~~~~AD~vI~n~~~~ 173 (192)
T 2grj_A 149 EADR-----RL---KFQEDIVPQGIVVANNSTL 173 (192)
T ss_dssp SHHH-----HH---TTCTTCCCCSEEEECSSCH
T ss_pred HhcC-----Cc---hhhhHHhcCCEEEECCCCH
Confidence 1233 11 3466789999999988644
No 59
>2f6r_A COA synthase, bifunctional coenzyme A synthase; 18044849, bifunctional coenzyme A synthase (COA synthase), S genomics; HET: ACO UNL; 1.70A {Mus musculus}
Probab=99.29 E-value=3.9e-12 Score=131.27 Aligned_cols=166 Identities=12% Similarity=0.215 Sum_probs=102.9
Q ss_pred CcceEEEEECCCCCcHHHHHHHHHHhCCCceEEEecCccc----cc--------cccccc-CCCCCCCchhhHHHHH---
Q 006117 64 HGIILVGVAGPSGAGKTVFTEKVLNFMPSIAVITMDNYND----SS--------RIIDGN-FDDPRLTDYDTLLENI--- 127 (660)
Q Consensus 64 e~~~IIGI~GpSGSGKSTLak~L~~lLp~~g~I~lDg~~~----~~--------~~i~~v-fq~p~l~d~~tl~e~L--- 127 (660)
.++++|+|+|++||||||+++.|+.+ +...|+.|.+.. .. ...+.. +.....++...+...+
T Consensus 73 ~~~~iI~I~G~~GSGKSTva~~La~l--g~~~id~D~~~~~~~~~~~~~~~~i~~~~g~~i~~~~g~idr~~l~~~vf~~ 150 (281)
T 2f6r_A 73 SGLYVLGLTGISGSGKSSVAQRLKNL--GAYIIDSDHLGHRAYAPGGPAYQPVVEAFGTDILHKDGTINRKVLGSRVFGN 150 (281)
T ss_dssp TTCEEEEEEECTTSCHHHHHHHHHHH--TCEEEEHHHHHHHHTSTTSTTHHHHHHHHCGGGBCTTSSBCHHHHHHHHTTC
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHHC--CCcEEehhHHHHHHhcCChHHHHHHHHHcCccccCCCCCcCHHHHHHHHhCC
Confidence 45789999999999999999999954 456778776521 10 011111 2112234443332221
Q ss_pred -HhhhcCcccccccccccccccccceeeecCCccEEEEecceeecccccCCCCEEEEEEcChhHHHHHHHHHHHHHhCCC
Q 006117 128 -RGLKEGKAVQVPIYDFKSSSRIGYRTLEVPSSRIVIIEGIYALSEKLRPLIDLRVSVTGGVHFDLVKRVFRDIQRVGQE 206 (660)
Q Consensus 128 -~~L~~Gk~I~~PiyD~s~~~rs~~~~~~v~~a~VVIVEGilaL~deLr~llDlkIfVdad~dirLiRRI~RDv~eRGrs 206 (660)
..+...+.+..|.+......+.. ........+||+||.+++...+...+|.+|||++|.++++.|...|+ |++
T Consensus 151 ~~~~~~l~~i~~P~i~~~~~~~~~--~~~~~~~~~vIveg~~l~~~~~~~~~d~vI~l~a~~ev~~~Rl~~R~----g~s 224 (281)
T 2f6r_A 151 KKQMKILTDIVWPVIAKLAREEMD--VAVAKGKTLCVIDAAMLLEAGWQSMVHEVWTVVIPETEAVRRIVERD----GLS 224 (281)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHH--HHHHTTCCEEEEECTTTTTTTGGGGCSEEEEEECCHHHHHHHHHHHH----CCC
T ss_pred HHHHHHhhcccChHHHHHHHHHHH--HHhccCCCEEEEEechhhccchHHhCCEEEEEcCCHHHHHHHHHHcC----CCC
Confidence 11122233455544333222221 11112346899999988766677889999999999999887777664 889
Q ss_pred HHHHHHHHHhccccchhhcccCCcCcCcEEEeCCCCC
Q 006117 207 PEEIIHQISETVYPMYKAFIEPDLQTAHIKIINKFNP 243 (660)
Q Consensus 207 ~E~Vl~qy~~~v~P~~~~fIeP~k~~ADiII~N~~~p 243 (660)
.+++..++... ++.... + ..||++|+|+.++
T Consensus 225 ~e~~~~ri~~q-~~~~~~-~----~~AD~vIdn~~s~ 255 (281)
T 2f6r_A 225 EAAAQSRLQSQ-MSGQQL-V----EQSNVVLSTLWES 255 (281)
T ss_dssp HHHHHHHHHTS-CCHHHH-H----HTCSEEEECSSCH
T ss_pred HHHHHHHHHHc-CChHhh-H----hhCCEEEECCCCH
Confidence 99988888655 443222 2 4689999876433
No 60
>3qf4_B Uncharacterized ABC transporter ATP-binding prote TM_0288; multidrug transporter, transport protein; HET: ANP; 2.90A {Thermotoga maritima}
Probab=99.26 E-value=9.7e-13 Score=149.36 Aligned_cols=137 Identities=17% Similarity=0.207 Sum_probs=105.9
Q ss_pred cceeeeecC-ceEEEEecceeeccCCcceEEEEECCCCCcHHHHHHHHHHhC-CCceEEEecCccccc-------ccccc
Q 006117 40 EDTLSFEKG-FFIVIRACQLLAQKNHGIILVGVAGPSGAGKTVFTEKVLNFM-PSIAVITMDNYNDSS-------RIIDG 110 (660)
Q Consensus 40 ~~~ls~~~g-~~~vL~~Isl~i~~ge~~~IIGI~GpSGSGKSTLak~L~~lL-p~~g~I~lDg~~~~~-------~~i~~ 110 (660)
.+++++.++ ...+|+++||.+++|+ ++||+||||||||||+++|++++ |+.|.|.+||.+... +.+++
T Consensus 357 ~~~v~~~y~~~~~~l~~isl~i~~G~---~~~ivG~sGsGKSTll~~l~g~~~p~~G~i~~~g~~i~~~~~~~~r~~i~~ 433 (598)
T 3qf4_B 357 FKNVWFSYDKKKPVLKDITFHIKPGQ---KVALVGPTGSGKTTIVNLLMRFYDVDRGQILVDGIDIRKIKRSSLRSSIGI 433 (598)
T ss_dssp EEEEECCSSSSSCSCCSEEEECCTTC---EEEEECCTTSSTTHHHHHHTTSSCCSEEEEEETTEEGGGSCHHHHHHHEEE
T ss_pred EEEEEEECCCCCccccceEEEEcCCC---EEEEECCCCCcHHHHHHHHhcCcCCCCeEEEECCEEhhhCCHHHHHhceEE
Confidence 355566664 3568999999999999 99999999999999999999999 899999999975432 35889
Q ss_pred cCCCCCCCchhhHHHHHHhhhcC---ccc--------------ccc-cccccc----cccccceeeecCCccEEEEecce
Q 006117 111 NFDDPRLTDYDTLLENIRGLKEG---KAV--------------QVP-IYDFKS----SSRIGYRTLEVPSSRIVIIEGIY 168 (660)
Q Consensus 111 vfq~p~l~d~~tl~e~L~~L~~G---k~I--------------~~P-iyD~s~----~~rs~~~~~~v~~a~VVIVEGil 168 (660)
++|+|.+|+ .++.+|+...... +.+ ..| .++... ...++++.+++..++.++-++.+
T Consensus 434 v~Q~~~lf~-~tv~eni~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~t~~~~~g~~LSgGq~Qrv~iAral~~~p~i 512 (598)
T 3qf4_B 434 VLQDTILFS-TTVKENLKYGNPGATDEEIKEAAKLTHSDHFIKHLPEGYETVLTDNGEDLSQGQRQLLAITRAFLANPKI 512 (598)
T ss_dssp ECTTCCCCS-SBHHHHHHSSSTTCCTTHHHHHTTTTTCHHHHHTSTTGGGCBCHHHHTTSCHHHHHHHHHHHHHHTCCSE
T ss_pred EeCCCcccc-ccHHHHHhcCCCCCCHHHHHHHHHHhCCHHHHHhccccccchhcCCCCCCCHHHHHHHHHHHHHhcCCCE
Confidence 999999987 5999999743211 000 011 111111 24567788888999999999999
Q ss_pred eecccccCCCCE
Q 006117 169 ALSEKLRPLIDL 180 (660)
Q Consensus 169 aL~deLr~llDl 180 (660)
++.||+...+|.
T Consensus 513 lllDEpts~LD~ 524 (598)
T 3qf4_B 513 LILDEATSNVDT 524 (598)
T ss_dssp EEECCCCTTCCH
T ss_pred EEEECCccCCCH
Confidence 999999999996
No 61
>2yl4_A ATP-binding cassette SUB-family B member 10, mitochondrial; membrane protein, mitochondrial transport; HET: ACP LMT CDL 14Y; 2.85A {Homo sapiens} PDB: 4aa3_A*
Probab=99.25 E-value=3e-12 Score=145.17 Aligned_cols=136 Identities=17% Similarity=0.241 Sum_probs=106.0
Q ss_pred ceeeeecCc---eEEEEecceeeccCCcceEEEEECCCCCcHHHHHHHHHHhC-CCceEEEecCccccc-------cccc
Q 006117 41 DTLSFEKGF---FIVIRACQLLAQKNHGIILVGVAGPSGAGKTVFTEKVLNFM-PSIAVITMDNYNDSS-------RIID 109 (660)
Q Consensus 41 ~~ls~~~g~---~~vL~~Isl~i~~ge~~~IIGI~GpSGSGKSTLak~L~~lL-p~~g~I~lDg~~~~~-------~~i~ 109 (660)
+++++.++. ..+|+++||.+++|+ ++||+||||||||||+++|++++ |+.|.|.+||.+... +.++
T Consensus 345 ~~v~~~y~~~~~~~vl~~isl~i~~G~---~~~ivG~sGsGKSTLl~~l~g~~~p~~G~i~~~g~~i~~~~~~~~~~~i~ 421 (595)
T 2yl4_A 345 KNVHFAYPARPEVPIFQDFSLSIPSGS---VTALVGPSGSGKSTVLSLLLRLYDPASGTISLDGHDIRQLNPVWLRSKIG 421 (595)
T ss_dssp EEEEEECSSCTTSEEEEEEEEEECTTC---EEEEECCTTSSSTHHHHHHTTSSCCSEEEEEETTEETTTBCHHHHHHSEE
T ss_pred EEEEEEeCCCCCCccccceEEEEcCCC---EEEEECCCCCCHHHHHHHHhcCcCCCCcEEEECCEEhhhCCHHHHHhceE
Confidence 455566543 479999999999999 99999999999999999999998 899999999975432 3578
Q ss_pred ccCCCCCCCchhhHHHHHHhhhcC---c---cc--------------ccc-cccccc----cccccceeeecCCccEEEE
Q 006117 110 GNFDDPRLTDYDTLLENIRGLKEG---K---AV--------------QVP-IYDFKS----SSRIGYRTLEVPSSRIVII 164 (660)
Q Consensus 110 ~vfq~p~l~d~~tl~e~L~~L~~G---k---~I--------------~~P-iyD~s~----~~rs~~~~~~v~~a~VVIV 164 (660)
+++|+|.+|+ .++.+|+...... . .+ ..| .++... ...++++.+++..++.++-
T Consensus 422 ~v~Q~~~l~~-~tv~eni~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~~g~~~~~~~~~~~LSgGq~qrv~iAral~~ 500 (595)
T 2yl4_A 422 TVSQEPILFS-CSIAENIAYGADDPSSVTAEEIQRVAEVANAVAFIRNFPQGFNTVVGEKGVLLSGGQKQRIAIARALLK 500 (595)
T ss_dssp EECSSCCCCS-SBHHHHHHTTSSSTTTSCHHHHHHHHHHTTCHHHHHTSSSGGGCBCSSSSCCCCHHHHHHHHHHHHHHH
T ss_pred EEccCCcccC-CCHHHHHhhcCCCccccCHHHHHHHHHHcCCHHHHHhCcccccccccCCCCcCCHHHHHHHHHHHHHHc
Confidence 9999999987 4999999753211 0 00 011 122222 3456778888999999999
Q ss_pred ecceeecccccCCCCE
Q 006117 165 EGIYALSEKLRPLIDL 180 (660)
Q Consensus 165 EGilaL~deLr~llDl 180 (660)
++.+++.||+...+|.
T Consensus 501 ~p~illlDEpts~LD~ 516 (595)
T 2yl4_A 501 NPKILLLDEATSALDA 516 (595)
T ss_dssp CCSEEEEECCCSSCCH
T ss_pred CCCEEEEECcccCCCH
Confidence 9999999999999997
No 62
>3qf4_A ABC transporter, ATP-binding protein; multidrug transporter, transport protein; HET: ANP; 2.90A {Thermotoga maritima}
Probab=99.25 E-value=1.8e-12 Score=146.84 Aligned_cols=137 Identities=17% Similarity=0.240 Sum_probs=106.1
Q ss_pred cceeeeec--CceEEEEecceeeccCCcceEEEEECCCCCcHHHHHHHHHHhC-CCceEEEecCccccc-------cccc
Q 006117 40 EDTLSFEK--GFFIVIRACQLLAQKNHGIILVGVAGPSGAGKTVFTEKVLNFM-PSIAVITMDNYNDSS-------RIID 109 (660)
Q Consensus 40 ~~~ls~~~--g~~~vL~~Isl~i~~ge~~~IIGI~GpSGSGKSTLak~L~~lL-p~~g~I~lDg~~~~~-------~~i~ 109 (660)
.+++++.+ +...+|+++||.+++|+ ++||+||||||||||+++|++++ |..|.|.+||.+... +.++
T Consensus 344 ~~~v~~~y~~~~~~~l~~isl~i~~Ge---~~~ivG~sGsGKSTll~~l~g~~~~~~G~i~i~g~~i~~~~~~~~r~~i~ 420 (587)
T 3qf4_A 344 FENVEFRYFENTDPVLSGVNFSVKPGS---LVAVLGETGSGKSTLMNLIPRLIDPERGRVEVDELDVRTVKLKDLRGHIS 420 (587)
T ss_dssp EEEEEECSSSSSCCSEEEEEEEECTTC---EEEEECSSSSSHHHHHHTTTTSSCCSEEEEEESSSBGGGBCHHHHHHHEE
T ss_pred EEEEEEEcCCCCCcceeceEEEEcCCC---EEEEECCCCCCHHHHHHHHhCCccCCCcEEEECCEEcccCCHHHHHhheE
Confidence 34555655 44679999999999999 99999999999999999999998 899999999985432 4588
Q ss_pred ccCCCCCCCchhhHHHHHHhhhcCc---c-------------c-ccc-cccc----cccccccceeeecCCccEEEEecc
Q 006117 110 GNFDDPRLTDYDTLLENIRGLKEGK---A-------------V-QVP-IYDF----KSSSRIGYRTLEVPSSRIVIIEGI 167 (660)
Q Consensus 110 ~vfq~p~l~d~~tl~e~L~~L~~Gk---~-------------I-~~P-iyD~----s~~~rs~~~~~~v~~a~VVIVEGi 167 (660)
+++|+|.+|+. ++++|+....... . + ..| -++. .....++++.+++..++.++-++.
T Consensus 421 ~v~Q~~~lf~~-tv~eni~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~g~~~~~~~~~~~LSgGqrQrv~lARal~~~p~ 499 (587)
T 3qf4_A 421 AVPQETVLFSG-TIKENLKWGREDATDDEIVEAAKIAQIHDFIISLPEGYDSRVERGGRNFSGGQKQRLSIARALVKKPK 499 (587)
T ss_dssp EECSSCCCCSE-EHHHHHTTTCSSCCHHHHHHHHHHTTCHHHHHTSSSGGGCEECSSSCSSCHHHHHHHHHHHHHHTCCS
T ss_pred EECCCCcCcCc-cHHHHHhccCCCCCHHHHHHHHHHhCcHHHHHhcccchhhHhcCCCCCcCHHHHHHHHHHHHHHcCCC
Confidence 99999999974 9999986432110 0 0 011 1221 123456678888888999999999
Q ss_pred eeecccccCCCCE
Q 006117 168 YALSEKLRPLIDL 180 (660)
Q Consensus 168 laL~deLr~llDl 180 (660)
+++.||+...+|.
T Consensus 500 illlDEpts~LD~ 512 (587)
T 3qf4_A 500 VLILDDCTSSVDP 512 (587)
T ss_dssp EEEEESCCTTSCH
T ss_pred EEEEECCcccCCH
Confidence 9999999999996
No 63
>4i1u_A Dephospho-COA kinase; structural genomics, niaid, national institute of allergy AN infectious diseases; 2.05A {Burkholderia vietnamiensis} PDB: 4i1v_A*
Probab=99.22 E-value=5.7e-12 Score=125.87 Aligned_cols=162 Identities=16% Similarity=0.174 Sum_probs=112.6
Q ss_pred cceEEEEECCCCCcHHHHHHHHHHhCCCceEEEecCccc-----cc---c----ccc-ccCCCCCCCchhhHHHHHHh--
Q 006117 65 GIILVGVAGPSGAGKTVFTEKVLNFMPSIAVITMDNYND-----SS---R----IID-GNFDDPRLTDYDTLLENIRG-- 129 (660)
Q Consensus 65 ~~~IIGI~GpSGSGKSTLak~L~~lLp~~g~I~lDg~~~-----~~---~----~i~-~vfq~p~l~d~~tl~e~L~~-- 129 (660)
.++-|||+|+.||||||+++.|.. + +..+|..|.... .. . ..+ .+++..+..|...+.+.+..
T Consensus 8 ~~~~iglTGgigsGKStv~~~l~~-~-g~~vidaD~ia~~l~~~~~~~~~~i~~~fG~~~~~~dg~ldR~~L~~~vF~d~ 85 (210)
T 4i1u_A 8 HMYAIGLTGGIGSGKTTVADLFAA-R-GASLVDTDLIAHRITAPAGLAMPAIEQTFGPAFVAADGSLDRARMRALIFSDE 85 (210)
T ss_dssp SCCEEEEECCTTSCHHHHHHHHHH-T-TCEEEEHHHHHHHHTSTTCTTHHHHHHHHCGGGBCTTSSBCHHHHHHHHHHCH
T ss_pred ceeEEEEECCCCCCHHHHHHHHHH-C-CCcEEECcHHHHHHhcCCcHHHHHHHHHhChhhcCCCCCCcHHHHHHHHhCCH
Confidence 356899999999999999999998 4 567888886311 11 0 111 13444455677777766642
Q ss_pred --hhcCcccccccccccccccccceeeecCCccEEEEecceeec-ccccCCCCEEEEEEcChhHHHHHHHHHHHHHhCCC
Q 006117 130 --LKEGKAVQVPIYDFKSSSRIGYRTLEVPSSRIVIIEGIYALS-EKLRPLIDLRVSVTGGVHFDLVKRVFRDIQRVGQE 206 (660)
Q Consensus 130 --L~~Gk~I~~PiyD~s~~~rs~~~~~~v~~a~VVIVEGilaL~-deLr~llDlkIfVdad~dirLiRRI~RDv~eRGrs 206 (660)
+..-+.+.+|........... .....++++|.++++. ..+...+|..|+|++|.++++.|.+.|+ |.+
T Consensus 86 ~~~~~L~~i~HP~I~~~~~~~~~-----~~~~~~vv~d~pLL~E~~~~~~~~D~vi~V~ap~e~r~~Rl~~Rd----g~s 156 (210)
T 4i1u_A 86 DARRRLEAITHPLIRAETEREAR-----DAQGPYVIFVVPLLVESRNWKARCDRVLVVDCPVDTQIARVMQRN----GFT 156 (210)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHH-----TCCSSSEEEECTTCTTCHHHHHHCSEEEEEECCHHHHHHHHHHHH----CCC
T ss_pred HHHHHHHHHhhHHHHHHHHHHHH-----hcCCCEEEEEEecccccCCccccCCeEEEEECCHHHHHHHHHhcC----CCC
Confidence 223355666654433322221 1234679999999998 7888899999999999999888777776 999
Q ss_pred HHHHHHHHHhccccchhhcccCCcCcCcEEEeCC-CCC
Q 006117 207 PEEIIHQISETVYPMYKAFIEPDLQTAHIKIINK-FNP 243 (660)
Q Consensus 207 ~E~Vl~qy~~~v~P~~~~fIeP~k~~ADiII~N~-~~p 243 (660)
.+++..++..+ +|. ++.++.||+||.|+ .++
T Consensus 157 ~eea~~ri~~Q-~~~-----eek~~~AD~VIdN~~gsl 188 (210)
T 4i1u_A 157 REQVEAIIARQ-ATR-----EARLAAADDVIVNDAATP 188 (210)
T ss_dssp HHHHHHHHHHS-CCH-----HHHHHTCSEEEECSSCCH
T ss_pred HHHHHHHHHHc-CCh-----HHHHHhCCEEEECCCCCH
Confidence 99998888543 454 34458999999988 654
No 64
>4e22_A Cytidylate kinase; P-loop, CMP/ATP binding, transferase; 2.32A {Yersinia pseudotuberculosis}
Probab=99.20 E-value=2e-12 Score=130.99 Aligned_cols=81 Identities=12% Similarity=0.115 Sum_probs=50.7
Q ss_pred ccEEEEecceeecccccCCCCEEEEEEcChhHHHHHHHHHHHHH-hCCCHHHHHHHHHhccccchhhcccCCcCcCc-EE
Q 006117 159 SRIVIIEGIYALSEKLRPLIDLRVSVTGGVHFDLVKRVFRDIQR-VGQEPEEIIHQISETVYPMYKAFIEPDLQTAH-IK 236 (660)
Q Consensus 159 a~VVIVEGilaL~deLr~llDlkIfVdad~dirLiRRI~RDv~e-RGrs~E~Vl~qy~~~v~P~~~~fIeP~k~~AD-iI 236 (660)
..-+|+||..+.. -+.+..|++|||+++.++|..|++.+...+ .+.+.+++.+++..+...+..+.+.|.+..|| ++
T Consensus 145 ~~~~V~~gr~~~~-~v~~~~~~~ifl~A~~e~r~~R~~~~l~~~~~~~~~~~~~~~i~~rd~~~~~r~~~pl~~~~d~~~ 223 (252)
T 4e22_A 145 APGLIADGRDMGT-IVFPDAPVKIFLDASSQERAHRRMLQLQERGFNVNFERLLAEIQERDNRDRNRSVAPLVPAADALV 223 (252)
T ss_dssp SSCEEEEESSCCC-CCSTTCSEEEEEECCHHHHHHHHHHHHHHHTCCCCHHHHHHHHC------------CCCCCTTEEE
T ss_pred CCCEEEEeceece-eecCCCCEEEEEECCHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHhhhccccchhccCCeEE
Confidence 3457788854432 244557999999999999988877654433 35688999999988888888899999999999 66
Q ss_pred EeCC
Q 006117 237 IINK 240 (660)
Q Consensus 237 I~N~ 240 (660)
|+++
T Consensus 224 Idts 227 (252)
T 4e22_A 224 LDST 227 (252)
T ss_dssp EECS
T ss_pred EECc
Confidence 6654
No 65
>2bbs_A Cystic fibrosis transmembrane conductance regulator; ATP binding cassette, transport protein; HET: ATP; 2.05A {Homo sapiens} PDB: 2bbt_A* 1xmi_A* 1xmj_A* 2bbo_A* 3si7_A* 1r0w_A 1q3h_A 1r0x_A* 1r0y_A* 1r0z_A* 1r10_A* 1xf9_A* 1xfa_A*
Probab=99.20 E-value=2.6e-12 Score=133.90 Aligned_cols=128 Identities=20% Similarity=0.204 Sum_probs=94.9
Q ss_pred ceeeeecCceEEEEecceeeccCCcceEEEEECCCCCcHHHHHHHHHHhC-CCceEEEecCcccccccccccCCCCCCCc
Q 006117 41 DTLSFEKGFFIVIRACQLLAQKNHGIILVGVAGPSGAGKTVFTEKVLNFM-PSIAVITMDNYNDSSRIIDGNFDDPRLTD 119 (660)
Q Consensus 41 ~~ls~~~g~~~vL~~Isl~i~~ge~~~IIGI~GpSGSGKSTLak~L~~lL-p~~g~I~lDg~~~~~~~i~~vfq~p~l~d 119 (660)
+++++. ...++++++|.+++|+ +++|+||||||||||+++|++++ |..|.|.++| .++++||++.+|+
T Consensus 44 ~~l~~~--~~~vl~~isl~i~~Ge---~~~i~G~NGsGKSTLlk~l~Gl~~p~~G~I~~~g------~i~~v~Q~~~l~~ 112 (290)
T 2bbs_A 44 SNFSLL--GTPVLKDINFKIERGQ---LLAVAGSTGAGKTSLLMMIMGELEPSEGKIKHSG------RISFCSQNSWIMP 112 (290)
T ss_dssp --------CCCSEEEEEEEECTTC---EEEEEESTTSSHHHHHHHHTTSSCEEEEEEECCS------CEEEECSSCCCCS
T ss_pred EEEEEc--CceEEEeeEEEEcCCC---EEEEECCCCCcHHHHHHHHhcCCCCCCcEEEECC------EEEEEeCCCccCc
Confidence 344443 2468999999999999 99999999999999999999998 7899999987 3789999998888
Q ss_pred hhhHHHHHHhhhcCc-c---------c-----cccc-----ccccccccccceeeecCCccEEEEecceeecccccCCCC
Q 006117 120 YDTLLENIRGLKEGK-A---------V-----QVPI-----YDFKSSSRIGYRTLEVPSSRIVIIEGIYALSEKLRPLID 179 (660)
Q Consensus 120 ~~tl~e~L~~L~~Gk-~---------I-----~~Pi-----yD~s~~~rs~~~~~~v~~a~VVIVEGilaL~deLr~llD 179 (660)
. ++.+++....... . + ..|. .+......++++.+++..++.++.++.+++.||+...+|
T Consensus 113 ~-tv~enl~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~LSgGq~QRv~lAraL~~~p~lllLDEPts~LD 191 (290)
T 2bbs_A 113 G-TIKENIIGVSYDEYRYRSVIKACQLEEDISKFAEKDNIVLGEGGITLSGGQRARISLARAVYKDADLYLLDSPFGYLD 191 (290)
T ss_dssp S-BHHHHHHTTCCCHHHHHHHHHHTTCHHHHHTSTTGGGCBC----CCCCHHHHHHHHHHHHHHSCCSEEEEESTTTTCC
T ss_pred c-cHHHHhhCcccchHHHHHHHHHhChHHHHHhccccccchhcCccCcCCHHHHHHHHHHHHHHCCCCEEEEECCcccCC
Confidence 5 9999986211000 0 0 0010 001123566778888888889999999999999999999
Q ss_pred E
Q 006117 180 L 180 (660)
Q Consensus 180 l 180 (660)
.
T Consensus 192 ~ 192 (290)
T 2bbs_A 192 V 192 (290)
T ss_dssp H
T ss_pred H
Confidence 6
No 66
>1jjv_A Dephospho-COA kinase; P-loop nucleotide-binding fold, structure 2 function project, S2F, structural genomics, transferase; HET: ATP; 2.00A {Haemophilus influenzae} SCOP: c.37.1.1
Probab=99.19 E-value=9.7e-12 Score=120.70 Aligned_cols=161 Identities=16% Similarity=0.169 Sum_probs=88.1
Q ss_pred ceEEEEECCCCCcHHHHHHHHHHhCCCceEEEecCcccc--cc----------cccc-cCCCCCCCchhhHHHHHHh---
Q 006117 66 IILVGVAGPSGAGKTVFTEKVLNFMPSIAVITMDNYNDS--SR----------IIDG-NFDDPRLTDYDTLLENIRG--- 129 (660)
Q Consensus 66 ~~IIGI~GpSGSGKSTLak~L~~lLp~~g~I~lDg~~~~--~~----------~i~~-vfq~p~l~d~~tl~e~L~~--- 129 (660)
+++|||+|++||||||+++.|++ + +...+..|.+... .. ..+. .+......+...+.+.+..
T Consensus 2 ~~~i~l~G~~GsGKST~~~~La~-l-g~~~id~d~~~~~~~~~~~~~~~~i~~~~g~~~~~~~g~~~r~~l~~~~f~~~~ 79 (206)
T 1jjv_A 2 TYIVGLTGGIGSGKTTIANLFTD-L-GVPLVDADVVAREVVAKDSPLLSKIVEHFGAQILTEQGELNRAALRERVFNHDE 79 (206)
T ss_dssp CEEEEEECSTTSCHHHHHHHHHT-T-TCCEEEHHHHHHHTTCSSCHHHHHHHHHHCTTCC------CHHHHHHHHHTCHH
T ss_pred CcEEEEECCCCCCHHHHHHHHHH-C-CCcccchHHHHHHHccCChHHHHHHHHHhCHHHhccCccccHHHHHHHHhCCHH
Confidence 35899999999999999999998 4 4446666654211 00 0010 1111111222222211110
Q ss_pred -hhcCcccccccccccccccccceeeecCCccEEEEecceeecccccCCCCEEEEEEcChhHHHHHHHHHHHHHhCCCHH
Q 006117 130 -LKEGKAVQVPIYDFKSSSRIGYRTLEVPSSRIVIIEGIYALSEKLRPLIDLRVSVTGGVHFDLVKRVFRDIQRVGQEPE 208 (660)
Q Consensus 130 -L~~Gk~I~~PiyD~s~~~rs~~~~~~v~~a~VVIVEGilaL~deLr~llDlkIfVdad~dirLiRRI~RDv~eRGrs~E 208 (660)
+.....+..|.+........ .......+|+++.+++...+...+|.+|||++|.++++.|...|+ |.+.+
T Consensus 80 ~~~~l~~~~~p~v~~~~~~~~-----~~~~~~~vv~~~~~l~e~~~~~~~d~vi~l~~~~e~~~~Rl~~R~----~~~~e 150 (206)
T 1jjv_A 80 DKLWLNNLLHPAIRERMKQKL-----AEQTAPYTLFVVPLLIENKLTALCDRILVVDVSPQTQLARSAQRD----NNNFE 150 (206)
T ss_dssp HHHHHHHHHHHHHHHHHHHHH-----HTCCSSEEEEECTTTTTTTCGGGCSEEEEEECCHHHHHHHHC---------CHH
T ss_pred HHHHHHhccCHHHHHHHHHHH-----HhcCCCEEEEEechhhhcCcHhhCCEEEEEECCHHHHHHHHHHcC----CCCHH
Confidence 00001222343322211111 011234788999887765577889999999999999887776664 77888
Q ss_pred HHHHHHHhccccchhhcccCCcCcCcEEEeCCCCC
Q 006117 209 EIIHQISETVYPMYKAFIEPDLQTAHIKIINKFNP 243 (660)
Q Consensus 209 ~Vl~qy~~~v~P~~~~fIeP~k~~ADiII~N~~~p 243 (660)
++.+++... .+. +|.++.||++|+|+.++
T Consensus 151 ~~~~r~~~q-~~~-----~~~~~~ad~vIdn~~~~ 179 (206)
T 1jjv_A 151 QIQRIMNSQ-VSQ-----QERLKWADDVINNDAEL 179 (206)
T ss_dssp HHHHHHHHS-CCH-----HHHHHHCSEEEECCSCH
T ss_pred HHHHHHHhc-CCh-----HHHHHhCCEEEECCCCc
Confidence 888877542 232 33345799999887644
No 67
>1cke_A CK, MSSA, protein (cytidine monophosphate kinase); nucleotide monophosphate kinase,, transferase; 1.75A {Escherichia coli} SCOP: c.37.1.1 PDB: 1kdo_A* 1kdp_A* 1kdr_A* 1kdt_A* 2cmk_A* 2fem_A 2feo_A*
Probab=99.16 E-value=1.4e-11 Score=120.84 Aligned_cols=80 Identities=13% Similarity=0.101 Sum_probs=49.7
Q ss_pred ccEEEEecceeecccccCCCCEEEEEEcChhHHHHHHHHHHHHHhCC--CHHHHHHHHHhccccchhhcccCCcCc-CcE
Q 006117 159 SRIVIIEGIYALSEKLRPLIDLRVSVTGGVHFDLVKRVFRDIQRVGQ--EPEEIIHQISETVYPMYKAFIEPDLQT-AHI 235 (660)
Q Consensus 159 a~VVIVEGilaL~deLr~llDlkIfVdad~dirLiRRI~RDv~eRGr--s~E~Vl~qy~~~v~P~~~~fIeP~k~~-ADi 235 (660)
...+++||..+. ..+.+.+|++||++++.++++.|+..+ ..++|+ +.+++..++..++.+.|.++++|.+.. +++
T Consensus 123 ~~~~vldg~~~~-~~~~~~~d~~i~l~~~~e~~~~R~~~~-l~~rg~~~~~~~~~~~i~~R~~~~~~~~~~pl~~~~~~~ 200 (227)
T 1cke_A 123 LPGLIADGRDMG-TVVFPDAPVKIFLDASSEERAHRRMLQ-LQVKGFSVNFERLLAEIKERDDRDRNRAVAPLVPAADAL 200 (227)
T ss_dssp TTCEEEEESSCC-CCCCTTCSEEEEEECCHHHHHHHHHHH-HHHHTCCCCHHHHHHHHC-------------CCCCTTCE
T ss_pred CCCEEEECCCcc-ceEecCCCEEEEEeCCHHHHHHHHHHH-HHhCCccCCHHHHHHHHHHHHHhhhhhcccCccCCCCEE
Confidence 457888998533 345667899999999999987776543 445677 788899999888888888888887765 457
Q ss_pred EEeCC
Q 006117 236 KIINK 240 (660)
Q Consensus 236 II~N~ 240 (660)
+|+|+
T Consensus 201 ~Id~~ 205 (227)
T 1cke_A 201 VLDST 205 (227)
T ss_dssp EEETT
T ss_pred EEeCC
Confidence 77765
No 68
>3bhd_A Thtpase, thiamine triphosphatase; hydrolase, structural genomics consortium, CYTH SGC; HET: MSE CIT; 1.50A {Homo sapiens} PDB: 2jmu_A
Probab=99.15 E-value=2.7e-10 Score=115.22 Aligned_cols=133 Identities=13% Similarity=0.090 Sum_probs=105.2
Q ss_pred ceeeeeecCCCCCcccccceEEEeecCCeEEEEEeeeecCCCceeeeeEEEEee--------------------hhhHHH
Q 006117 279 ETYDIYLLPPGEDPDACQSYLRMRNRDGKYNLMFEEWVTDSPFIISPRITFEVS--------------------VRLLGG 338 (660)
Q Consensus 279 ~~~DIYl~pP~~d~~~tde~LRvR~~dg~~~Ltykg~~~d~~fi~rp~~efeV~--------------------v~~~~g 338 (660)
.+.|+||..|..+++..+.|||+|..+| +|+|.|-..+.-..+++.+ ++. ..+...
T Consensus 53 ~q~n~YfDTpd~~L~~~~~aLRiR~~~~---~tlK~p~~~g~~~~~~ey~-e~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 128 (234)
T 3bhd_A 53 TFRDTYYDTPELSLMQADHWLRRREDSG---WELKCPGAAGVLGPHTEYK-ELTAEPTIVAQLCKVLRADGLGAGDVAAV 128 (234)
T ss_dssp EEEEEEEECTTCHHHHTTCEEEEETTTE---EEEEEESSBTTBCTTSEEE-EECSHHHHHHHHHHHHTC---CCSSHHHH
T ss_pred eEEEEEeeCCChHHHhCCcEEEEECCCC---eEEecCCccCccCCcceec-cccCccchhhhhhhhhcCCccchhHHHHH
Confidence 3559999999999999999999998874 8889886554111122322 222 134445
Q ss_pred HhhcCCeEEEEEEEeeeEeec--------C-cEEEEeecccccCcceEEEE---------eccHHHHHHHHHHcCCCCCc
Q 006117 339 LMALGYTIATILKRSSHIFYD--------D-RVCVKTDWLEQLNRKYVQVQ---------GRDRLYVKYVGEQLGLDGSY 400 (660)
Q Consensus 339 L~~LGy~~aa~V~R~re~y~~--------g-~~~i~lD~ve~Lg~~FveI~---------g~~~~~v~~~~~~Lgl~G~~ 400 (660)
|..+||.+++.+.+.|+.|.. + ++.|+||.++ +|.+|+||+ ....+.+.+++.+|||..+.
T Consensus 129 L~~~~l~p~~~~~~~R~~~~l~~~~~~~~~~~~~v~LD~~~-~G~~~~ElElEl~~~~~~~~~~~~l~~la~~Lgl~~~~ 207 (234)
T 3bhd_A 129 LGPLGLQEVASFVTKRSAWKLVLLGADEEEPQLRVDLDTAD-FGYAVGEVEALVHEEAEVPTALEKIHRLSSMLGVPAQE 207 (234)
T ss_dssp HHHHTCEEEEEEEEEEEEEEEEGGGGCSSSCEEEEEEEEET-TSCEEEEEEEEESSGGGHHHHHHHHHHHHHHHTCCTTC
T ss_pred HhcCCCEEEEEEEEEEEEEEEcccCCccCCCeEEEEEeccc-CCCEEEEEEEEeCCcccchHHHHHHHHHHHHcCCCccc
Confidence 667999999999999999988 8 9999999999 996699996 23677899999999999889
Q ss_pred cchhhHHHHHHhhhccc
Q 006117 401 VPRTYIEQIQLEKLVND 417 (660)
Q Consensus 401 i~kSYLEli~lek~~~~ 417 (660)
++++|++.+ ++..-++
T Consensus 208 ~~~~k~~~~-l~~~~~~ 223 (234)
T 3bhd_A 208 TAPAKLIVY-LQRFRPQ 223 (234)
T ss_dssp CCCCHHHHH-HHHHCHH
T ss_pred cchHHHHHH-HHHhCHH
Confidence 999999999 7765443
No 69
>3g5u_A MCG1178, multidrug resistance protein 1A; P-glycoprotein, PGP, cyclic peptide, membrane protein; 3.80A {Mus musculus} PDB: 3g61_A* 3g60_A*
Probab=99.13 E-value=2.1e-11 Score=149.40 Aligned_cols=136 Identities=19% Similarity=0.285 Sum_probs=105.8
Q ss_pred ceeeeecC---ceEEEEecceeeccCCcceEEEEECCCCCcHHHHHHHHHHhC-CCceEEEecCccccc-------cccc
Q 006117 41 DTLSFEKG---FFIVIRACQLLAQKNHGIILVGVAGPSGAGKTVFTEKVLNFM-PSIAVITMDNYNDSS-------RIID 109 (660)
Q Consensus 41 ~~ls~~~g---~~~vL~~Isl~i~~ge~~~IIGI~GpSGSGKSTLak~L~~lL-p~~g~I~lDg~~~~~-------~~i~ 109 (660)
++++|.++ ...+|+++||.+++|+ ++||+|+||||||||+++|.+++ |+.|.|.+||.+... +.++
T Consensus 391 ~~v~~~y~~~~~~~vL~~isl~i~~G~---~~~ivG~sGsGKSTl~~ll~g~~~~~~G~i~i~g~~i~~~~~~~~r~~i~ 467 (1284)
T 3g5u_A 391 KNIHFSYPSRKEVQILKGLNLKVKSGQ---TVALVGNSGCGKSTTVQLMQRLYDPLDGMVSIDGQDIRTINVRYLREIIG 467 (1284)
T ss_dssp EEEEECCSSTTSCCSEEEEEEEECTTC---EEEEECCSSSSHHHHHHHTTTSSCCSEEEEEETTEEGGGSCHHHHHHHEE
T ss_pred EEEEEEcCCCCCCcceecceEEEcCCC---EEEEECCCCCCHHHHHHHHhCCCCCCCeEEEECCEEHHhCCHHHHHhheE
Confidence 45556654 2469999999999999 99999999999999999999998 899999999975432 3589
Q ss_pred ccCCCCCCCchhhHHHHHHhhhcCc---c-------------c-ccc-cccccc----cccccceeeecCCccEEEEecc
Q 006117 110 GNFDDPRLTDYDTLLENIRGLKEGK---A-------------V-QVP-IYDFKS----SSRIGYRTLEVPSSRIVIIEGI 167 (660)
Q Consensus 110 ~vfq~p~l~d~~tl~e~L~~L~~Gk---~-------------I-~~P-iyD~s~----~~rs~~~~~~v~~a~VVIVEGi 167 (660)
+++|+|.+|+. ++++|+....... . + ..| .|+... ...++++++++..++.++-++.
T Consensus 468 ~v~Q~~~l~~~-ti~eNi~~g~~~~~~~~~~~~~~~~~~~~~i~~l~~g~~t~~~~~g~~LSgGq~QriaiARal~~~p~ 546 (1284)
T 3g5u_A 468 VVSQEPVLFAT-TIAENIRYGREDVTMDEIEKAVKEANAYDFIMKLPHQFDTLVGERGAQLSGGQKQRIAIARALVRNPK 546 (1284)
T ss_dssp EECSSCCCCSS-CHHHHHHHHCSSCCHHHHHHHHHHTTCHHHHHHSTTGGGCCCSSSSCSSCHHHHHHHHHHHHHHHCCS
T ss_pred EEcCCCccCCc-cHHHHHhcCCCCCCHHHHHHHHHHhCcHHHHHhccccccccccCCCCccCHHHHHHHHHHHHHhcCCC
Confidence 99999999875 9999987532210 0 0 112 122222 2356678888999999999999
Q ss_pred eeecccccCCCCE
Q 006117 168 YALSEKLRPLIDL 180 (660)
Q Consensus 168 laL~deLr~llDl 180 (660)
+++.||+...+|.
T Consensus 547 iliLDEpts~LD~ 559 (1284)
T 3g5u_A 547 ILLLDEATSALDT 559 (1284)
T ss_dssp EEEEESTTCSSCH
T ss_pred EEEEECCCCCCCH
Confidence 9999999999996
No 70
>4f4c_A Multidrug resistance protein PGP-1; ABC transporter, ATPase, multi-drug transporter, exporter, A binding, hydrolase,protein transport; HET: NDG NAG BMA MAN 0SA; 3.40A {Caenorhabditis elegans}
Probab=99.09 E-value=1.1e-11 Score=152.16 Aligned_cols=136 Identities=21% Similarity=0.269 Sum_probs=106.5
Q ss_pred ceeeeecC---ceEEEEecceeeccCCcceEEEEECCCCCcHHHHHHHHHHhC-CCceEEEecCccccc-------cccc
Q 006117 41 DTLSFEKG---FFIVIRACQLLAQKNHGIILVGVAGPSGAGKTVFTEKVLNFM-PSIAVITMDNYNDSS-------RIID 109 (660)
Q Consensus 41 ~~ls~~~g---~~~vL~~Isl~i~~ge~~~IIGI~GpSGSGKSTLak~L~~lL-p~~g~I~lDg~~~~~-------~~i~ 109 (660)
++++|.+. ...+|+++||.+++|+ .++|+|++|||||||++.|.+++ |..|.|.+||.+... ..++
T Consensus 419 ~nvsF~Y~~~~~~~vL~~isl~i~~G~---~vaivG~sGsGKSTll~ll~~~~~~~~G~I~idG~~i~~~~~~~lr~~i~ 495 (1321)
T 4f4c_A 419 ENVHFTYPSRPDVPILRGMNLRVNAGQ---TVALVGSSGCGKSTIISLLLRYYDVLKGKITIDGVDVRDINLEFLRKNVA 495 (1321)
T ss_dssp EEEEECCSSSTTSCSEEEEEEEECTTC---EEEEEECSSSCHHHHHHHHTTSSCCSEEEEEETTEETTTSCHHHHHHHEE
T ss_pred EEeeeeCCCCCCCceeeceEEeecCCc---EEEEEecCCCcHHHHHHHhccccccccCcccCCCccchhccHHHHhhccc
Confidence 55666653 4579999999999999 99999999999999999999999 899999999975443 4589
Q ss_pred ccCCCCCCCchhhHHHHHHhhhcCc----------------cc-ccc-ccccccc----ccccceeeecCCccEEEEecc
Q 006117 110 GNFDDPRLTDYDTLLENIRGLKEGK----------------AV-QVP-IYDFKSS----SRIGYRTLEVPSSRIVIIEGI 167 (660)
Q Consensus 110 ~vfq~p~l~d~~tl~e~L~~L~~Gk----------------~I-~~P-iyD~s~~----~rs~~~~~~v~~a~VVIVEGi 167 (660)
+++|+|.+|+ .++++|+..-...- .+ ..| -|+-..+ ..+++|++++..++.++-++.
T Consensus 496 ~v~Q~~~Lf~-~TI~eNI~~g~~~~~~~~v~~a~~~a~l~~~i~~lp~G~~T~vGe~G~~LSGGQkQRiaiARAl~~~~~ 574 (1321)
T 4f4c_A 496 VVSQEPALFN-CTIEENISLGKEGITREEMVAACKMANAEKFIKTLPNGYNTLVGDRGTQLSGGQKQRIAIARALVRNPK 574 (1321)
T ss_dssp EECSSCCCCS-EEHHHHHHTTCTTCCHHHHHHHHHHTTCHHHHHHSTTTTSSEESSSSCCCCHHHHHHHHHHHHHTTCCS
T ss_pred ccCCcceeeC-CchhHHHhhhcccchHHHHHHHHHHccchhHHHcCCCCCccEecCCCCCCCHHHHHHHHHHHHHccCCC
Confidence 9999999987 68999986533210 01 112 2333333 245678888988898888999
Q ss_pred eeecccccCCCCE
Q 006117 168 YALSEKLRPLIDL 180 (660)
Q Consensus 168 laL~deLr~llDl 180 (660)
.++.||+...+|.
T Consensus 575 IliLDE~tSaLD~ 587 (1321)
T 4f4c_A 575 ILLLDEATSALDA 587 (1321)
T ss_dssp EEEEESTTTTSCT
T ss_pred EEEEecccccCCH
Confidence 9999999999986
No 71
>3d3q_A TRNA delta(2)-isopentenylpyrophosphate transferase; alpha-beta protein, structural genomics, PSI-2; 2.70A {Staphylococcus epidermidis atcc 12228}
Probab=99.08 E-value=1.1e-11 Score=131.99 Aligned_cols=153 Identities=13% Similarity=0.135 Sum_probs=98.2
Q ss_pred eEEEEECCCCCcHHHHHHHHHHhCCCceEEEecCcccccccccccCCCCCCCchhhHHHHHHhhhcCccccccccccccc
Q 006117 67 ILVGVAGPSGAGKTVFTEKVLNFMPSIAVITMDNYNDSSRIIDGNFDDPRLTDYDTLLENIRGLKEGKAVQVPIYDFKSS 146 (660)
Q Consensus 67 ~IIGI~GpSGSGKSTLak~L~~lLp~~g~I~lDg~~~~~~~i~~vfq~p~l~d~~tl~e~L~~L~~Gk~I~~PiyD~s~~ 146 (660)
.+|+|+||+|||||||++.|+..++ ...|+.|++..... ....-..|..-....+..++..+..+.. ..+.++|..+
T Consensus 8 ~lI~I~GptgSGKTtla~~La~~l~-~~iis~Ds~qvYr~-~~i~Takp~~eE~~~v~hhl~di~~~~~-~~~~~dF~~~ 84 (340)
T 3d3q_A 8 FLIVIVGPTASGKTELSIEVAKKFN-GEIISGDSMQVYQG-MDIGTAKVTTEEMEGIPHYMIDILPPDA-SFSAYEFKKR 84 (340)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHHTT-EEEEECCSSTTBTT-CCTTTTCCCTTTTTTCCEESSSCBCTTS-CCCHHHHHHH
T ss_pred ceEEEECCCcCcHHHHHHHHHHHcC-Cceecccccccccc-ccccccCCCHHHHHHHHHHHHHHhCCcc-ccCHHHHHHH
Confidence 5899999999999999999999984 67899998722110 0000000100000000011112222333 5667777665
Q ss_pred ccccceeeecCCccEEEEecceeecccccCCCCEEEEEE-cChh--HHHHHHHHHHHHHhCCCHHHHHHHHHhccccchh
Q 006117 147 SRIGYRTLEVPSSRIVIIEGIYALSEKLRPLIDLRVSVT-GGVH--FDLVKRVFRDIQRVGQEPEEIIHQISETVYPMYK 223 (660)
Q Consensus 147 ~rs~~~~~~v~~a~VVIVEGilaL~deLr~llDlkIfVd-ad~d--irLiRRI~RDv~eRGrs~E~Vl~qy~~~v~P~~~ 223 (660)
.+.........+..+|+++|..++.+.+...+| +|++ +|.+ +|+.+++.| +.++|. +++++|+..+.|.+.
T Consensus 85 a~~~i~~i~~~g~~~IlvGGt~ly~~~l~~~l~--~~~~~~d~~~~~Rlrrrl~r-~~~~G~---~~l~~~L~~vdP~~a 158 (340)
T 3d3q_A 85 AEKYIKDITRRGKVPIIAGGTGLYIQSLLYNYA--FEDESISEDKMKQVKLKLKE-LEHLNN---NKLHEYLASFDKESA 158 (340)
T ss_dssp HHHHHHHHHHTTCEEEEECCCHHHHHHHHBCSC--CC---CCHHHHHHHHHHHHT-TSSSCH---HHHHHHHHHHCHHHH
T ss_pred HHHHHHHHHhCCCcEEEECChhhhHHHHHhccc--ccCCCCChHHHHHHHHHHHH-HHhcCH---HHHHHHHHhhCcHHH
Confidence 543322222245678889999877788888887 6788 8887 678888888 777775 478999999999999
Q ss_pred hcccC
Q 006117 224 AFIEP 228 (660)
Q Consensus 224 ~fIeP 228 (660)
++|.|
T Consensus 159 ~~I~p 163 (340)
T 3d3q_A 159 KDIHP 163 (340)
T ss_dssp HHSCT
T ss_pred hhcCc
Confidence 99987
No 72
>3g5u_A MCG1178, multidrug resistance protein 1A; P-glycoprotein, PGP, cyclic peptide, membrane protein; 3.80A {Mus musculus} PDB: 3g61_A* 3g60_A*
Probab=99.07 E-value=5.8e-11 Score=145.54 Aligned_cols=136 Identities=18% Similarity=0.260 Sum_probs=104.4
Q ss_pred ceeeeecCc---eEEEEecceeeccCCcceEEEEECCCCCcHHHHHHHHHHhC-CCceEEEecCccccc-------cccc
Q 006117 41 DTLSFEKGF---FIVIRACQLLAQKNHGIILVGVAGPSGAGKTVFTEKVLNFM-PSIAVITMDNYNDSS-------RIID 109 (660)
Q Consensus 41 ~~ls~~~g~---~~vL~~Isl~i~~ge~~~IIGI~GpSGSGKSTLak~L~~lL-p~~g~I~lDg~~~~~-------~~i~ 109 (660)
+++++.++. ..+|+++||.+++|+ ++||+|+||||||||+++|.+++ |..|.|.+||.+... +.++
T Consensus 1034 ~~v~~~y~~~~~~~~l~~vsl~i~~Ge---~v~ivG~sGsGKSTl~~~l~g~~~p~~G~I~i~g~~i~~~~~~~~r~~i~ 1110 (1284)
T 3g5u_A 1034 SGVVFNYPTRPSIPVLQGLSLEVKKGQ---TLALVGSSGCGKSTVVQLLERFYDPMAGSVFLDGKEIKQLNVQWLRAQLG 1110 (1284)
T ss_dssp EEEEBCCSCGGGCCSBSSCCEEECSSS---EEEEECSSSTTHHHHHHHHTTSSCCSEEEEESSSSCTTSSCHHHHTTSCE
T ss_pred EEEEEECCCCCCCeeecceeEEEcCCC---EEEEECCCCCCHHHHHHHHhcCcCCCCCEEEECCEEcccCCHHHHHhceE
Confidence 445555532 368999999999999 99999999999999999999998 899999999975432 4588
Q ss_pred ccCCCCCCCchhhHHHHHHhhhcC------------------ccc-ccc-cccccc----cccccceeeecCCccEEEEe
Q 006117 110 GNFDDPRLTDYDTLLENIRGLKEG------------------KAV-QVP-IYDFKS----SSRIGYRTLEVPSSRIVIIE 165 (660)
Q Consensus 110 ~vfq~p~l~d~~tl~e~L~~L~~G------------------k~I-~~P-iyD~s~----~~rs~~~~~~v~~a~VVIVE 165 (660)
+++|+|.+|+ .++++|+...... ..+ ..| .||-.. ...++++.+++..++.++-+
T Consensus 1111 ~v~Q~~~l~~-~ti~eNi~~~~~~~~~~~~~i~~~~~~~~~~~~i~~l~~gldt~vge~G~~LSgGq~Qrv~iARal~~~ 1189 (1284)
T 3g5u_A 1111 IVSQEPILFD-CSIAENIAYGDNSRVVSYEEIVRAAKEANIHQFIDSLPDKYNTRVGDKGTQLSGGQKQRIAIARALVRQ 1189 (1284)
T ss_dssp EEESSCCCCS-SBHHHHHTCCCSSCCCCHHHHHHHHHHHTCHHHHSSTTTGGGCBCSTTSCSSCHHHHHHHHHHHHHHHC
T ss_pred EECCCCcccc-ccHHHHHhccCCCCCCCHHHHHHHHHHhCcHHHHHhCccccccccCCCCCccCHHHHHHHHHHHHHHcC
Confidence 9999998886 5889888532110 001 112 233222 23567788889999999999
Q ss_pred cceeecccccCCCCE
Q 006117 166 GIYALSEKLRPLIDL 180 (660)
Q Consensus 166 GilaL~deLr~llDl 180 (660)
+.+++.||+...+|.
T Consensus 1190 p~iLiLDEpTs~lD~ 1204 (1284)
T 3g5u_A 1190 PHILLLDEATSALDT 1204 (1284)
T ss_dssp CSSEEEESCSSSCCH
T ss_pred CCEEEEeCCcccCCH
Confidence 999999999999997
No 73
>4f4c_A Multidrug resistance protein PGP-1; ABC transporter, ATPase, multi-drug transporter, exporter, A binding, hydrolase,protein transport; HET: NDG NAG BMA MAN 0SA; 3.40A {Caenorhabditis elegans}
Probab=99.06 E-value=8.7e-12 Score=153.19 Aligned_cols=136 Identities=16% Similarity=0.226 Sum_probs=105.1
Q ss_pred ceeeeecC---ceEEEEecceeeccCCcceEEEEECCCCCcHHHHHHHHHHhC-CCceEEEecCccccc-------cccc
Q 006117 41 DTLSFEKG---FFIVIRACQLLAQKNHGIILVGVAGPSGAGKTVFTEKVLNFM-PSIAVITMDNYNDSS-------RIID 109 (660)
Q Consensus 41 ~~ls~~~g---~~~vL~~Isl~i~~ge~~~IIGI~GpSGSGKSTLak~L~~lL-p~~g~I~lDg~~~~~-------~~i~ 109 (660)
++++|.|. ...||+++||.+++|+ .|||+|+||||||||++.|.+++ |..|.|.+||.+... +.++
T Consensus 1080 ~nVsf~Y~~~~~~~VL~~isl~I~~Ge---~vaIVG~SGsGKSTL~~lL~rl~~p~~G~I~iDG~di~~i~~~~lR~~i~ 1156 (1321)
T 4f4c_A 1080 KNVRFAYPERPEIEILKGLSFSVEPGQ---TLALVGPSGCGKSTVVALLERFYDTLGGEIFIDGSEIKTLNPEHTRSQIA 1156 (1321)
T ss_dssp EEEEECCTTSCSSCSEEEEEEEECTTC---EEEEECSTTSSTTSHHHHHTTSSCCSSSEEEETTEETTTBCHHHHHTTEE
T ss_pred EEEEEeCCCCCCCccccceeEEECCCC---EEEEECCCCChHHHHHHHHhcCccCCCCEEEECCEEhhhCCHHHHHhheE
Confidence 55666653 3469999999999999 99999999999999999999998 899999999986543 4689
Q ss_pred ccCCCCCCCchhhHHHHHHhhhc-C-----------------ccc-ccc-cccccccc----cccceeeecCCccEEEEe
Q 006117 110 GNFDDPRLTDYDTLLENIRGLKE-G-----------------KAV-QVP-IYDFKSSS----RIGYRTLEVPSSRIVIIE 165 (660)
Q Consensus 110 ~vfq~p~l~d~~tl~e~L~~L~~-G-----------------k~I-~~P-iyD~s~~~----rs~~~~~~v~~a~VVIVE 165 (660)
+++|+|.+|+ .++++||..-.. . +.+ ..| -||...++ .+++|++++..++.++-+
T Consensus 1157 ~V~Qdp~LF~-gTIreNI~~gld~~~~sd~ei~~Al~~a~l~~~I~~Lp~GldT~vge~G~~LSgGQrQriaiARAllr~ 1235 (1321)
T 4f4c_A 1157 IVSQEPTLFD-CSIAENIIYGLDPSSVTMAQVEEAARLANIHNFIAELPEGFETRVGDRGTQLSGGQKQRIAIARALVRN 1235 (1321)
T ss_dssp EECSSCCCCS-EEHHHHHSSSSCTTTSCHHHHHHHHHHTTCHHHHHTSTTTTCSEETTTSCSSCHHHHHHHHHHHHHHSC
T ss_pred EECCCCEeeC-ccHHHHHhccCCCCCCCHHHHHHHHHHhCChHHHHcCcCCCCCEecCCCcccCHHHHHHHHHHHHHHhC
Confidence 9999999997 589988743110 0 001 112 24443332 456788888888888888
Q ss_pred cceeecccccCCCCE
Q 006117 166 GIYALSEKLRPLIDL 180 (660)
Q Consensus 166 GilaL~deLr~llDl 180 (660)
+..++.||....+|.
T Consensus 1236 ~~ILiLDEaTSaLD~ 1250 (1321)
T 4f4c_A 1236 PKILLLDEATSALDT 1250 (1321)
T ss_dssp CSEEEEESCCCSTTS
T ss_pred CCEEEEeCccccCCH
Confidence 888889999999986
No 74
>2if2_A Dephospho-COA kinase; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative, northeast structural genomics consortium, NESG; 3.00A {Aquifex aeolicus}
Probab=99.05 E-value=7.8e-11 Score=113.92 Aligned_cols=158 Identities=15% Similarity=0.171 Sum_probs=87.0
Q ss_pred eEEEEECCCCCcHHHHHHHHHHhCCCceEEEecCccccc-----cc---c----c-ccCCCCCCCchhhHHHHHH----h
Q 006117 67 ILVGVAGPSGAGKTVFTEKVLNFMPSIAVITMDNYNDSS-----RI---I----D-GNFDDPRLTDYDTLLENIR----G 129 (660)
Q Consensus 67 ~IIGI~GpSGSGKSTLak~L~~lLp~~g~I~lDg~~~~~-----~~---i----~-~vfq~p~l~d~~tl~e~L~----~ 129 (660)
.+|+|+|++||||||+++.|++ + +...++.|.+.... .. + + ..|......+...+.+.+. .
T Consensus 2 ~~i~i~G~~GsGKSTl~~~L~~-~-g~~~i~~d~~~~~~~~~~~~~~~~i~~~~g~~~~~~~g~~~r~~l~~~~f~~~~~ 79 (204)
T 2if2_A 2 KRIGLTGNIGCGKSTVAQMFRE-L-GAYVLDADKLIHSFYRKGHPVYEEVVKTFGKGILDEEGNIDRKKLADIVFKDEEK 79 (204)
T ss_dssp CEEEEEECTTSSHHHHHHHHHH-T-TCEEEEHHHHHHGGGSSSSHHHHHHHHHHCTTTTEETTEECHHHHHHTTSSCHHH
T ss_pred eEEEEECCCCcCHHHHHHHHHH-C-CCEEEEccHHHHHHhcCCHHHHHHHHHHhCHHhhCCCCcCCHHHHHHHHhCCHHH
Confidence 4799999999999999999999 6 56677777653210 00 0 0 0010011111111111100 0
Q ss_pred hhcCcccccccccccccccccceeeecCCccEEEEecceeecccccCCCCEEEEEEcChhHHHHHHHHHHHHHhCCCHHH
Q 006117 130 LKEGKAVQVPIYDFKSSSRIGYRTLEVPSSRIVIIEGIYALSEKLRPLIDLRVSVTGGVHFDLVKRVFRDIQRVGQEPEE 209 (660)
Q Consensus 130 L~~Gk~I~~PiyD~s~~~rs~~~~~~v~~a~VVIVEGilaL~deLr~llDlkIfVdad~dirLiRRI~RDv~eRGrs~E~ 209 (660)
+..-..+..|.+......... ......++|+||.+++...+...+|.+|||+++.+++..|... ||.+.++
T Consensus 80 ~~~l~~l~~~~v~~~~~~~~~----~~~~~~~vive~~~l~~~~~~~~~~~~i~l~~~~e~~~~Rl~~-----R~~~~~~ 150 (204)
T 2if2_A 80 LRKLEEITHRALYKEIEKITK----NLSEDTLFILEASLLVEKGTYKNYDKLIVVYAPYEVCKERAIK-----RGMSEED 150 (204)
T ss_dssp HHHHHHHHHHHHTTTHHHHHH----HSCTTCCEEEECSCSTTTTCGGGSSEEEEECCCHHHHHHHHHH-----TCCCHHH
T ss_pred HHHHHHhhCHHHHHHHHHHHH----hccCCCEEEEEccccccCCchhhCCEEEEEECCHHHHHHHHHH-----cCCCHHH
Confidence 000001112222111111000 0111168899999887766777899999999999887655543 3788888
Q ss_pred HHHHHHhccccchhhcccCCcCcCcEEEeCCC
Q 006117 210 IIHQISETVYPMYKAFIEPDLQTAHIKIINKF 241 (660)
Q Consensus 210 Vl~qy~~~v~P~~~~fIeP~k~~ADiII~N~~ 241 (660)
+..++... +|. .+....||++|+|+.
T Consensus 151 ~~~~~~~~-~~~-----~~~~~~ad~vId~~~ 176 (204)
T 2if2_A 151 FERRWKKQ-MPI-----EEKVKYADYVIDNSG 176 (204)
T ss_dssp HHHHHTTS-CCH-----HHHGGGCSEECCCSS
T ss_pred HHHHHHhC-CCh-----hHHHhcCCEEEECCC
Confidence 77777443 332 223457899887653
No 75
>3tr0_A Guanylate kinase, GMP kinase; purines, pyrimidines, nucleosides, nucleotides, transferase; HET: 5GP; 1.85A {Coxiella burnetii}
Probab=99.03 E-value=3.5e-11 Score=115.85 Aligned_cols=160 Identities=16% Similarity=0.154 Sum_probs=81.5
Q ss_pred eeeccCCcceEEEEECCCCCcHHHHHHHHHHhCCCceEEEecCcccc-------cccccccCCCCCCCchhhHHHHHHhh
Q 006117 58 LLAQKNHGIILVGVAGPSGAGKTVFTEKVLNFMPSIAVITMDNYNDS-------SRIIDGNFDDPRLTDYDTLLENIRGL 130 (660)
Q Consensus 58 l~i~~ge~~~IIGI~GpSGSGKSTLak~L~~lLp~~g~I~lDg~~~~-------~~~i~~vfq~p~l~d~~tl~e~L~~L 130 (660)
+...+|+ ++||+||||||||||+++|++.+| .+.+++.... ...++++|+++..|+..+..+++...
T Consensus 2 ~~m~~g~---ii~l~Gp~GsGKSTl~~~L~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 75 (205)
T 3tr0_A 2 NAMNKAN---LFIISAPSGAGKTSLVRALVKALA---EIKISISHTTRPKRPGDQEGVDYFFIDETRFQAMVKEGAFLEH 75 (205)
T ss_dssp ---CCCC---EEEEECCTTSCHHHHHHHHHHHSS---SEEECCCEECSCCCTTCCBTTTBEECCHHHHHHHHHHTCEEEE
T ss_pred CcCCCCc---EEEEECcCCCCHHHHHHHHHhhCC---CeEEeceeccCCCchhHhcCceEEeccHHHHHHHHhcCcEEee
Confidence 4556777 999999999999999999999986 2444443211 13467788877655544433221110
Q ss_pred hcCcccccccccccccccccceeeecCCccEEEEecceeecccccCCCC--EEEEEEcChhHHHHHHHHHHHHHhCC-CH
Q 006117 131 KEGKAVQVPIYDFKSSSRIGYRTLEVPSSRIVIIEGIYALSEKLRPLID--LRVSVTGGVHFDLVKRVFRDIQRVGQ-EP 207 (660)
Q Consensus 131 ~~Gk~I~~PiyD~s~~~rs~~~~~~v~~a~VVIVEGilaL~deLr~llD--lkIfVdad~dirLiRRI~RDv~eRGr-s~ 207 (660)
.......|... .... ...+.....+++++.......+...++ ..||+.++....+.+|+. .||. +.
T Consensus 76 ---~~~~~~~~~~~-~~~i---~~~l~~g~~vi~d~~~~~~~~~~~~~~~~~~v~~~~~~~e~l~~Rl~----~R~~~~~ 144 (205)
T 3tr0_A 76 ---ATIYERHYGTE-KDWV---LRQLKAGRDVLLEIDWQGARQIRELFPPALSIFILPPSIEALRERLI----KRRQDDT 144 (205)
T ss_dssp ---EEETTEEEEEE-HHHH---HHHHHTTCEEEEECCHHHHHHHHHHCTTCEEEEEECSCHHHHHHHHH----TCTTSCS
T ss_pred ---eeeecccccch-HHHH---HHHHHcCCeEEEEECHHHHHHHHHhCCCcEEEEEECcCHHHHHHHHH----HhCCCCH
Confidence 00000001000 0000 011233456777753322222222222 568888765444555543 3343 44
Q ss_pred HHHHHHHHhccccchhhcccCCcCcCcEEEeCC
Q 006117 208 EEIIHQISETVYPMYKAFIEPDLQTAHIKIINK 240 (660)
Q Consensus 208 E~Vl~qy~~~v~P~~~~fIeP~k~~ADiII~N~ 240 (660)
+.+..++ ....+.. .....+|+||.|+
T Consensus 145 ~~i~~rl-~~~~~~~-----~~~~~~d~vi~n~ 171 (205)
T 3tr0_A 145 AIIEQRL-ALAREEM-----AHYKEFDYLVVND 171 (205)
T ss_dssp STHHHHH-HHHHHHH-----TTGGGCSEEEECS
T ss_pred HHHHHHH-HHHHHHH-----hcccCCCEEEECC
Confidence 4444444 3333332 2336789999876
No 76
>1yqt_A RNAse L inhibitor; ATP-binding cassette, ribosome biogenesis, hydrolyase/translation complex; HET: ADP; 1.90A {Pyrococcus furiosus}
Probab=99.01 E-value=2.1e-10 Score=128.97 Aligned_cols=150 Identities=17% Similarity=0.208 Sum_probs=106.7
Q ss_pred ceeeeecCceEEEEecceeeccCCcceEEEEECCCCCcHHHHHHHHHHhC-CCceEEEecCcccccccccccCCCCCCCc
Q 006117 41 DTLSFEKGFFIVIRACQLLAQKNHGIILVGVAGPSGAGKTVFTEKVLNFM-PSIAVITMDNYNDSSRIIDGNFDDPRLTD 119 (660)
Q Consensus 41 ~~ls~~~g~~~vL~~Isl~i~~ge~~~IIGI~GpSGSGKSTLak~L~~lL-p~~g~I~lDg~~~~~~~i~~vfq~p~l~d 119 (660)
+++++.++.. .++.++|.+.+|+ ++||+|+||||||||+++|++++ |..|.|.+ ...+++++|++..+.
T Consensus 291 ~~l~~~~~~~-~l~~~~~~i~~Ge---~~~i~G~NGsGKSTLlk~l~Gl~~p~~G~i~~------~~~i~~v~Q~~~~~~ 360 (538)
T 1yqt_A 291 PRLVKDYGSF-RLEVEPGEIKKGE---VIGIVGPNGIGKTTFVKMLAGVEEPTEGKIEW------DLTVAYKPQYIKADY 360 (538)
T ss_dssp CCEEEEETTE-EEEECCEEEETTC---EEEEECCTTSSHHHHHHHHHTSSCCSBCCCCC------CCCEEEECSSCCCCC
T ss_pred eeEEEEECCE-EEEeCccccCCCC---EEEEECCCCCCHHHHHHHHhCCCCCCCeEEEE------CceEEEEecCCcCCC
Confidence 4445555543 6899999999999 99999999999999999999998 77888875 235789999887665
Q ss_pred hhhHHHHHHhh-hcC----c-------cccc-ccccccccccccceeeecCCccEEEEecceeecccccCCCCEEEEEEc
Q 006117 120 YDTLLENIRGL-KEG----K-------AVQV-PIYDFKSSSRIGYRTLEVPSSRIVIIEGIYALSEKLRPLIDLRVSVTG 186 (660)
Q Consensus 120 ~~tl~e~L~~L-~~G----k-------~I~~-PiyD~s~~~rs~~~~~~v~~a~VVIVEGilaL~deLr~llDlkIfVda 186 (660)
..++.+++... ... . .+.. +..+...+..++++.+++..++.++.++.+++.||+...+|.
T Consensus 361 ~~tv~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSGGe~qrv~lAraL~~~p~lLlLDEPt~~LD~------ 434 (538)
T 1yqt_A 361 EGTVYELLSKIDASKLNSNFYKTELLKPLGIIDLYDREVNELSGGELQRVAIAATLLRDADIYLLDEPSAYLDV------ 434 (538)
T ss_dssp SSBHHHHHHHHHHHHHTCHHHHHHTTTTTTCGGGTTSBGGGCCHHHHHHHHHHHHHTSCCSEEEEECTTTTCCH------
T ss_pred CCcHHHHHHhhhccCCCHHHHHHHHHHHcCChhhhcCChhhCCHHHHHHHHHHHHHHhCCCEEEEeCCcccCCH------
Confidence 66777766543 100 0 0111 223444556677888888888889999999999999999998
Q ss_pred ChhHHHHHHHHHHHH-HhCCCH
Q 006117 187 GVHFDLVKRVFRDIQ-RVGQEP 207 (660)
Q Consensus 187 d~dirLiRRI~RDv~-eRGrs~ 207 (660)
.....+..+.+++. +.|.+.
T Consensus 435 -~~~~~i~~~l~~l~~~~g~tv 455 (538)
T 1yqt_A 435 -EQRLAVSRAIRHLMEKNEKTA 455 (538)
T ss_dssp -HHHHHHHHHHHHHHHHHTCEE
T ss_pred -HHHHHHHHHHHHHHHhCCCEE
Confidence 34444445555543 345543
No 77
>1q3t_A Cytidylate kinase; nucleotide monophosphate kinase, CMP kinase, transferase; NMR {Streptococcus pneumoniae} SCOP: c.37.1.1
Probab=99.00 E-value=3.9e-10 Score=112.40 Aligned_cols=81 Identities=15% Similarity=0.163 Sum_probs=61.3
Q ss_pred CccEEEEecceeecccccCCCCEEEEEEcChhHHHHHHHHHHHHHhCC--CHHHHHHHHHhccccchhhcccCCcCcCc-
Q 006117 158 SSRIVIIEGIYALSEKLRPLIDLRVSVTGGVHFDLVKRVFRDIQRVGQ--EPEEIIHQISETVYPMYKAFIEPDLQTAH- 234 (660)
Q Consensus 158 ~a~VVIVEGilaL~deLr~llDlkIfVdad~dirLiRRI~RDv~eRGr--s~E~Vl~qy~~~v~P~~~~fIeP~k~~AD- 234 (660)
....++++|..+. ..+...+|++|||+++.++++.|++.|.. .||+ +.+++..++..+.++.+.++++|....+|
T Consensus 134 ~~~~~v~~g~~~~-~~~l~~~d~vi~L~a~~e~~~~R~~~~~~-~R~~~~~~e~~~~~i~~R~~~~~~~~~~p~~~~~d~ 211 (236)
T 1q3t_A 134 QQGGIVMDGRDIG-TVVLPQAELKIFLVASVDERAERRYKENI-AKGIETDLETLKKEIAARDYKDSHRETSPLKQAEDA 211 (236)
T ss_dssp TTSCEEEECSSCS-SSSGGGCSEEEEEECCHHHHHHHHHHHHH-HTTCCCCHHHHHHHHHHHHHHHTTCSSSCCSCCTTC
T ss_pred ccCCEEEECCcch-hhhccCCCEEEEEECCHHHHHHHHHHHHH-hcCCCCCHHHHHHHHHHHhhhhhhcccccccccCCE
Confidence 3456777987543 23455679999999999998877766643 4554 78889889987788888888889887777
Q ss_pred EEEeCC
Q 006117 235 IKIINK 240 (660)
Q Consensus 235 iII~N~ 240 (660)
++|+|+
T Consensus 212 ~vId~~ 217 (236)
T 1q3t_A 212 VYLDTT 217 (236)
T ss_dssp EEEECS
T ss_pred EEEcCC
Confidence 888765
No 78
>3bk7_A ABC transporter ATP-binding protein; ABC ATPase, iron-sulfur cluster, adenosine diphosphate, nucleotide-binding; HET: ADP; 2.80A {Pyrococcus abyssi} PDB: 3j15_B*
Probab=99.00 E-value=1.6e-10 Score=131.76 Aligned_cols=151 Identities=16% Similarity=0.202 Sum_probs=108.3
Q ss_pred cceeeeecCceEEEEecceeeccCCcceEEEEECCCCCcHHHHHHHHHHhC-CCceEEEecCcccccccccccCCCCCCC
Q 006117 40 EDTLSFEKGFFIVIRACQLLAQKNHGIILVGVAGPSGAGKTVFTEKVLNFM-PSIAVITMDNYNDSSRIIDGNFDDPRLT 118 (660)
Q Consensus 40 ~~~ls~~~g~~~vL~~Isl~i~~ge~~~IIGI~GpSGSGKSTLak~L~~lL-p~~g~I~lDg~~~~~~~i~~vfq~p~l~ 118 (660)
.+++++.++.. .++.++|.+.+|+ ++||+||||||||||+++|++++ |+.|.|.+ ...+++++|++..+
T Consensus 360 ~~~l~~~~~~~-~l~~~~~~v~~Ge---i~~i~G~NGsGKSTLlk~l~Gl~~p~~G~I~~------~~~i~~v~Q~~~~~ 429 (607)
T 3bk7_A 360 YPRLVKDYGSF-KLEVEPGEIRKGE---VIGIVGPNGIGKTTFVKMLAGVEEPTEGKVEW------DLTVAYKPQYIKAE 429 (607)
T ss_dssp ECCEEEECSSC-EEEECCEEEETTC---EEEEECCTTSSHHHHHHHHHTSSCCSBSCCCC------CCCEEEECSSCCCC
T ss_pred EeceEEEecce-EEEecccccCCCC---EEEEECCCCCCHHHHHHHHhcCCCCCceEEEE------eeEEEEEecCccCC
Confidence 34455555543 6899999999999 99999999999999999999998 78888775 23578999998776
Q ss_pred chhhHHHHHHhh-hc----Cc-------cccc-ccccccccccccceeeecCCccEEEEecceeecccccCCCCEEEEEE
Q 006117 119 DYDTLLENIRGL-KE----GK-------AVQV-PIYDFKSSSRIGYRTLEVPSSRIVIIEGIYALSEKLRPLIDLRVSVT 185 (660)
Q Consensus 119 d~~tl~e~L~~L-~~----Gk-------~I~~-PiyD~s~~~rs~~~~~~v~~a~VVIVEGilaL~deLr~llDlkIfVd 185 (660)
...++.+++... .. .. .+.. +..+...+..++++.+++..++.++.++.+++.||+...+|.
T Consensus 430 ~~~tv~e~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSGGe~QRv~iAraL~~~p~lLlLDEPt~~LD~----- 504 (607)
T 3bk7_A 430 YEGTVYELLSKIDSSKLNSNFYKTELLKPLGIIDLYDRNVEDLSGGELQRVAIAATLLRDADIYLLDEPSAYLDV----- 504 (607)
T ss_dssp CSSBHHHHHHHHHHHHHHCHHHHHHTHHHHTCTTTTTSBGGGCCHHHHHHHHHHHHHTSCCSEEEEECTTTTCCH-----
T ss_pred CCCcHHHHHHhhhccCCCHHHHHHHHHHHcCCchHhcCChhhCCHHHHHHHHHHHHHHhCCCEEEEeCCccCCCH-----
Confidence 666777776543 10 00 0111 223444556777888888888999999999999999999998
Q ss_pred cChhHHHHHHHHHHHH-HhCCCH
Q 006117 186 GGVHFDLVKRVFRDIQ-RVGQEP 207 (660)
Q Consensus 186 ad~dirLiRRI~RDv~-eRGrs~ 207 (660)
.....+..+.+++. +.|.+.
T Consensus 505 --~~~~~l~~~l~~l~~~~g~tv 525 (607)
T 3bk7_A 505 --EQRLAVSRAIRHLMEKNEKTA 525 (607)
T ss_dssp --HHHHHHHHHHHHHHHHTTCEE
T ss_pred --HHHHHHHHHHHHHHHhCCCEE
Confidence 34444445555543 345543
No 79
>1vht_A Dephospho-COA kinase; structural genomics, transferase; HET: BA3; 1.59A {Escherichia coli} SCOP: c.37.1.1 PDB: 1vhl_A* 1viy_A 1t3h_A 1n3b_A
Probab=98.99 E-value=7.5e-10 Score=108.44 Aligned_cols=161 Identities=18% Similarity=0.151 Sum_probs=91.2
Q ss_pred ceEEEEECCCCCcHHHHHHHHHHhCCCceEEEecCcccc-----c-------cccccc-CCCCCCCchhhHHHHHHh---
Q 006117 66 IILVGVAGPSGAGKTVFTEKVLNFMPSIAVITMDNYNDS-----S-------RIIDGN-FDDPRLTDYDTLLENIRG--- 129 (660)
Q Consensus 66 ~~IIGI~GpSGSGKSTLak~L~~lLp~~g~I~lDg~~~~-----~-------~~i~~v-fq~p~l~d~~tl~e~L~~--- 129 (660)
+.+|+|+|++||||||+++.|++ + +...+..|.+... . ...+.. +.....++...+.+.+..
T Consensus 4 ~~~I~i~G~~GSGKST~~~~L~~-l-g~~~id~D~~~~~~~~~~~~~~~~i~~~~g~~~~~~~~~~~~~~l~~~~f~~~~ 81 (218)
T 1vht_A 4 RYIVALTGGIGSGKSTVANAFAD-L-GINVIDADIIARQVVEPGAPALHAIADHFGANMIAADGTLQRRALRERIFANPE 81 (218)
T ss_dssp CEEEEEECCTTSCHHHHHHHHHH-T-TCEEEEHHHHHHHTTSTTCTHHHHHHHHHCGGGBCTTSCBCHHHHHHHHHTCHH
T ss_pred ceEEEEECCCCCCHHHHHHHHHH-c-CCEEEEccHHHHHHhcCChHHHHHHHHHhHHHHcCCCCCCCHHHHHHHHhCCHH
Confidence 56999999999999999999998 5 4556666654211 0 001111 221222343333332211
Q ss_pred -hhcCcccccccccccccccccceeeecCCccEEEEecceeecccccCCCCEEEEEEcChhHHHHHHHHHHHHHhCCCHH
Q 006117 130 -LKEGKAVQVPIYDFKSSSRIGYRTLEVPSSRIVIIEGIYALSEKLRPLIDLRVSVTGGVHFDLVKRVFRDIQRVGQEPE 208 (660)
Q Consensus 130 -L~~Gk~I~~PiyD~s~~~rs~~~~~~v~~a~VVIVEGilaL~deLr~llDlkIfVdad~dirLiRRI~RDv~eRGrs~E 208 (660)
+...+.+..|.+......... ......+++|+.+++...+...+|..|||+++.+++..|...|+ |.+.+
T Consensus 82 ~~~~l~~~~~p~v~~~~~~~~~-----~~~~~~vi~~~~~l~~~~~~~~~d~vi~l~~~~e~~~~Rl~~R~----~~~~~ 152 (218)
T 1vht_A 82 EKNWLNALLHPLIQQETQHQIQ-----QATSPYVLWVVPLLVENSLYKKANRVLVVDVSPETQLKRTMQRD----DVTRE 152 (218)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHH-----HCCSSEEEEECTTTTTTTGGGGCSEEEEEECCHHHHHHHHHHHH----TCCHH
T ss_pred HHHHHHHhHCHHHHHHHHHHHH-----hcCCCEEEEEeeeeeccCccccCCEEEEEECCHHHHHHHHHHcC----CCCHH
Confidence 111112233433222111110 00224678888777654466789999999999988766555443 67877
Q ss_pred HHHHHHHhccccchhhcccCCcCcCcEEEeCCCCC
Q 006117 209 EIIHQISETVYPMYKAFIEPDLQTAHIKIINKFNP 243 (660)
Q Consensus 209 ~Vl~qy~~~v~P~~~~fIeP~k~~ADiII~N~~~p 243 (660)
++...+... ++.+. ....||++|+|+.++
T Consensus 153 ~~~~~~~~~-~~~~~-----~~~~ad~vId~~~~~ 181 (218)
T 1vht_A 153 HVEQILAAQ-ATREA-----RLAVADDVIDNNGAP 181 (218)
T ss_dssp HHHHHHHHS-CCHHH-----HHHHCSEEEECSSCT
T ss_pred HHHHHHHhc-CChHH-----HHHhCCEEEECCCCH
Confidence 777766443 33332 235689999887644
No 80
>3ozx_A RNAse L inhibitor; ATP binding cassette protein, hydrolase, translation; HET: ADP; 2.05A {Sulfolobus solfataricus}
Probab=98.97 E-value=4.7e-10 Score=126.21 Aligned_cols=150 Identities=12% Similarity=0.145 Sum_probs=106.7
Q ss_pred ceeeeecCceEEEEecceeeccCCcceEEEEECCCCCcHHHHHHHHHHhC-CCceEEEecCcccccccccccCCCCCCCc
Q 006117 41 DTLSFEKGFFIVIRACQLLAQKNHGIILVGVAGPSGAGKTVFTEKVLNFM-PSIAVITMDNYNDSSRIIDGNFDDPRLTD 119 (660)
Q Consensus 41 ~~ls~~~g~~~vL~~Isl~i~~ge~~~IIGI~GpSGSGKSTLak~L~~lL-p~~g~I~lDg~~~~~~~i~~vfq~p~l~d 119 (660)
+.++..++. ..+..+++.+++|+ ++||+||||||||||+++|++++ |+.|.|.+++. .+++++|++....
T Consensus 273 ~~l~~~~~~-~~l~~~~~~i~~Ge---i~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~~~-----~i~~~~q~~~~~~ 343 (538)
T 3ozx_A 273 TKIIKKLGD-FQLVVDNGEAKEGE---IIGILGPNGIGKTTFARILVGEITADEGSVTPEKQ-----ILSYKPQRIFPNY 343 (538)
T ss_dssp CCEEEEETT-EEEEECCEEEETTC---EEEEECCTTSSHHHHHHHHTTSSCCSBCCEESSCC-----CEEEECSSCCCCC
T ss_pred cceEEEECC-EEEEeccceECCCC---EEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCe-----eeEeechhccccc
Confidence 344444454 35778899999999 99999999999999999999998 88999987653 4567777765555
Q ss_pred hhhHHHHHHhhhcCc-------------cccc-ccccccccccccceeeecCCccEEEEecceeecccccCCCCEEEEEE
Q 006117 120 YDTLLENIRGLKEGK-------------AVQV-PIYDFKSSSRIGYRTLEVPSSRIVIIEGIYALSEKLRPLIDLRVSVT 185 (660)
Q Consensus 120 ~~tl~e~L~~L~~Gk-------------~I~~-PiyD~s~~~rs~~~~~~v~~a~VVIVEGilaL~deLr~llDlkIfVd 185 (660)
..++.+++....... .+.. ...+...+..++++.+++..++.++.++.+++.||+...+|.
T Consensus 344 ~~tv~~~l~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSGGq~QRv~iAraL~~~p~lLlLDEPT~gLD~----- 418 (538)
T 3ozx_A 344 DGTVQQYLENASKDALSTSSWFFEEVTKRLNLHRLLESNVNDLSGGELQKLYIAATLAKEADLYVLDQPSSYLDV----- 418 (538)
T ss_dssp SSBHHHHHHHHCSSTTCTTSHHHHHTTTTTTGGGCTTSBGGGCCHHHHHHHHHHHHHHSCCSEEEEESTTTTCCH-----
T ss_pred CCCHHHHHHHhhhhccchhHHHHHHHHHHcCCHHHhcCChhhCCHHHHHHHHHHHHHHcCCCEEEEeCCccCCCH-----
Confidence 567888776532110 0000 123444556777888889999999999999999999999997
Q ss_pred cChhHHHHHHHHHHHHH-hCCC
Q 006117 186 GGVHFDLVKRVFRDIQR-VGQE 206 (660)
Q Consensus 186 ad~dirLiRRI~RDv~e-RGrs 206 (660)
.....+.++.+++.+ .|.+
T Consensus 419 --~~~~~i~~~l~~l~~~~g~t 438 (538)
T 3ozx_A 419 --EERYIVAKAIKRVTRERKAV 438 (538)
T ss_dssp --HHHHHHHHHHHHHHHHTTCE
T ss_pred --HHHHHHHHHHHHHHHhCCCE
Confidence 333444455555433 4554
No 81
>1z6g_A Guanylate kinase; structural genomics, SGC, structural genom consortium, transferase; HET: EPE; 2.18A {Plasmodium falciparum}
Probab=98.94 E-value=6.2e-10 Score=110.35 Aligned_cols=169 Identities=17% Similarity=0.132 Sum_probs=83.7
Q ss_pred EEEEecceeeccCCcceEEEEECCCCCcHHHHHHHHHHhCCCceEEEecCcccc--------cccccccCCCCCCCchhh
Q 006117 51 IVIRACQLLAQKNHGIILVGVAGPSGAGKTVFTEKVLNFMPSIAVITMDNYNDS--------SRIIDGNFDDPRLTDYDT 122 (660)
Q Consensus 51 ~vL~~Isl~i~~ge~~~IIGI~GpSGSGKSTLak~L~~lLp~~g~I~lDg~~~~--------~~~i~~vfq~p~l~d~~t 122 (660)
.-|++|+|.+++|+ +++|+||||||||||+++|++++| |.|.+ +.... ...++++||++.+|+..+
T Consensus 11 ~~l~~isl~i~~G~---~~~lvGpsGsGKSTLl~~L~g~~p--G~i~~-g~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~ 84 (218)
T 1z6g_A 11 SSGLVPRGSMNNIY---PLVICGPSGVGKGTLIKKLLNEFP--NYFYF-SVSCTTRKKREKEKEGVDYYFIDKTIFEDKL 84 (218)
T ss_dssp -----------CCC---CEEEECSTTSSHHHHHHHHHHHST--TTEEE-CCCEECSCCCSSCCBTTTBEECCHHHHHHHH
T ss_pred ccccCCceecCCCC---EEEEECCCCCCHHHHHHHHHhhCC--CcEEE-eecccCCCCCcccccCCeEEECCHHHHHHhh
Confidence 45899999999999 999999999999999999999986 66766 43211 135678888776554321
Q ss_pred HHHHHHhhhcCcccccccccccccccccc-eeeecCCccEEEEecceeecccccCCC---C-EEEEEEcChhHHHHHHHH
Q 006117 123 LLENIRGLKEGKAVQVPIYDFKSSSRIGY-RTLEVPSSRIVIIEGIYALSEKLRPLI---D-LRVSVTGGVHFDLVKRVF 197 (660)
Q Consensus 123 l~e~L~~L~~Gk~I~~PiyD~s~~~rs~~-~~~~v~~a~VVIVEGilaL~deLr~ll---D-lkIfVdad~dirLiRRI~ 197 (660)
..+..+....|.......... ....+....+++++..+..-...+..+ + .++|+..+.-..+.++
T Consensus 85 --------~~~~~l~~~~~~~~~~g~~~~~i~~~l~~~~~~il~~~lsggq~qR~~i~~~~~~~~ll~~~~~~~Lde~-- 154 (218)
T 1z6g_A 85 --------KNEDFLEYDNYANNFYGTLKSEYDKAKEQNKICLFEMNINGVKQLKKSTHIKNALYIFIKPPSTDVLLSR-- 154 (218)
T ss_dssp --------HTTCEEEEEEETTEEEEEEHHHHHHHHHTTCEEEEEECHHHHHHHTTCSSCCSCEEEEEECSCHHHHHHH--
T ss_pred --------hccchhhhhhcccccCCCcHHHHHHHHhCCCcEEEEecHHHHHHHHHHhcCCCcEEEEEeCcCHHHHHHH--
Confidence 011111111111100000000 000112233445542222123344444 4 7899987755544444
Q ss_pred HHHHHhCCCHHHHHHHHHhccccchhhcccCCcCcCcEEEeCC
Q 006117 198 RDIQRVGQEPEEIIHQISETVYPMYKAFIEPDLQTAHIKIINK 240 (660)
Q Consensus 198 RDv~eRGrs~E~Vl~qy~~~v~P~~~~fIeP~k~~ADiII~N~ 240 (660)
...++...++.+.+.....++... +.. ...+|.||.++
T Consensus 155 --~~~~d~~~~~~i~~~l~~~~~~~~-~~h--~~~~d~iiv~~ 192 (218)
T 1z6g_A 155 --LLTRNTENQEQIQKRMEQLNIELH-EAN--LLNFNLSIIND 192 (218)
T ss_dssp --HHHTCCCCHHHHHHHHHHHHHHHH-HHT--TSCCSEEEECS
T ss_pred --HHhcCCCCHHHHHHHHHHHHHHHH-hhc--ccCCCEEEECC
Confidence 345566555555555454444433 222 36789888754
No 82
>1yqt_A RNAse L inhibitor; ATP-binding cassette, ribosome biogenesis, hydrolyase/translation complex; HET: ADP; 1.90A {Pyrococcus furiosus}
Probab=98.93 E-value=1.7e-10 Score=129.74 Aligned_cols=157 Identities=13% Similarity=0.173 Sum_probs=103.0
Q ss_pred cceeeeecCce-EEEEecceeeccCCcceEEEEECCCCCcHHHHHHHHHHhC-CCceEE---------EecCcccc----
Q 006117 40 EDTLSFEKGFF-IVIRACQLLAQKNHGIILVGVAGPSGAGKTVFTEKVLNFM-PSIAVI---------TMDNYNDS---- 104 (660)
Q Consensus 40 ~~~ls~~~g~~-~vL~~Isl~i~~ge~~~IIGI~GpSGSGKSTLak~L~~lL-p~~g~I---------~lDg~~~~---- 104 (660)
.+++++.++.. .++++++ .+++|+ ++||+|+||||||||+++|++++ |+.|.+ .++|....
T Consensus 24 ~~~ls~~yg~~~~~l~~vs-~i~~Ge---~~~LvG~NGaGKSTLlk~l~Gl~~p~~G~~~~~~~~~~~~~~g~~~~~~~~ 99 (538)
T 1yqt_A 24 EEDCVHRYGVNAFVLYRLP-VVKEGM---VVGIVGPNGTGKSTAVKILAGQLIPNLCGDNDSWDGVIRAFRGNELQNYFE 99 (538)
T ss_dssp CCCEEEECSTTCCEEECCC-CCCTTS---EEEEECCTTSSHHHHHHHHHTSSCCCTTTTCCSHHHHHHHTTTSTHHHHHH
T ss_pred hcCcEEEECCccccccCcC-cCCCCC---EEEEECCCCCCHHHHHHHHhCCCCCCCCccCcchhhhHHhhCCccHHHHHH
Confidence 45667777765 5899999 999999 99999999999999999999998 777764 23443211
Q ss_pred -----cccccccCCCCCCCch---hhHHHHHHhhhcCcc-------ccc-ccccccccccccceeeecCCccEEEEecce
Q 006117 105 -----SRIIDGNFDDPRLTDY---DTLLENIRGLKEGKA-------VQV-PIYDFKSSSRIGYRTLEVPSSRIVIIEGIY 168 (660)
Q Consensus 105 -----~~~i~~vfq~p~l~d~---~tl~e~L~~L~~Gk~-------I~~-PiyD~s~~~rs~~~~~~v~~a~VVIVEGil 168 (660)
...+++++|....++. .++.+++........ +.. ...+...++.++++.+++..+++++.++.+
T Consensus 100 ~~~~~~~~~~~~~q~~~~~~~~~~~~v~e~~~~~~~~~~~~~~l~~lgl~~~~~~~~~~LSgGekQRv~iAraL~~~P~l 179 (538)
T 1yqt_A 100 KLKNGEIRPVVKPQYVDLIPKAVKGKVIELLKKADETGKLEEVVKALELENVLEREIQHLSGGELQRVAIAAALLRNATF 179 (538)
T ss_dssp HHHTTSCCCEEECSCGGGSGGGCCSBHHHHHHHHCSSSCHHHHHHHTTCTTTTTSBGGGCCHHHHHHHHHHHHHHSCCSE
T ss_pred HHHHHhhhhhhhhhhhhhcchhhhccHHHHHhhhhHHHHHHHHHHHcCCChhhhCChhhCCHHHHHHHHHHHHHhcCCCE
Confidence 1123455555433221 245555432111000 111 123444566677888889999999999999
Q ss_pred eecccccCCCCEEEEEEcChhHHHHHHHHHHHHHhCCCH
Q 006117 169 ALSEKLRPLIDLRVSVTGGVHFDLVKRVFRDIQRVGQEP 207 (660)
Q Consensus 169 aL~deLr~llDlkIfVdad~dirLiRRI~RDv~eRGrs~ 207 (660)
++.||+...+|. .....+..+.+++.+.|.+.
T Consensus 180 LlLDEPTs~LD~-------~~~~~l~~~L~~l~~~g~tv 211 (538)
T 1yqt_A 180 YFFDEPSSYLDI-------RQRLNAARAIRRLSEEGKSV 211 (538)
T ss_dssp EEEESTTTTCCH-------HHHHHHHHHHHHHHHTTCEE
T ss_pred EEEECCcccCCH-------HHHHHHHHHHHHHHhcCCEE
Confidence 999999999997 34444555555555456543
No 83
>3r20_A Cytidylate kinase; structural genomics, seattle structural genomics center for infectious disease, ssgcid, ADP, DCMP, D transferase; 2.00A {Mycobacterium smegmatis} SCOP: c.37.1.0 PDB: 3r8c_A 4die_A*
Probab=98.92 E-value=1.1e-09 Score=110.77 Aligned_cols=78 Identities=10% Similarity=0.109 Sum_probs=60.7
Q ss_pred cEEEEecceeecccccCCCCEEEEEEcChhHHHHHHHHHHHHH-hCCCHHHHHHHHHhccccchhhcccCCcCcCc-EEE
Q 006117 160 RIVIIEGIYALSEKLRPLIDLRVSVTGGVHFDLVKRVFRDIQR-VGQEPEEIIHQISETVYPMYKAFIEPDLQTAH-IKI 237 (660)
Q Consensus 160 ~VVIVEGilaL~deLr~llDlkIfVdad~dirLiRRI~RDv~e-RGrs~E~Vl~qy~~~v~P~~~~fIeP~k~~AD-iII 237 (660)
.-+|+||--+.. -+.+..|++|||+++.+.|..||..+...+ .+.+.+++..++..+...+..+++.|.+..+| ++|
T Consensus 129 ~~~V~~GRd~gt-~V~pda~lkifl~A~~e~Ra~Rr~~~l~~~~~~~~~~~~~~~i~~rD~~d~~r~~~pl~~~~dal~I 207 (233)
T 3r20_A 129 GRVVVEGRDIGT-VVLPDADVKIFLTASAEERARRRNAQNVANGLPDDYATVLADVQRRDHLDSTRPVSPLRAADDALVV 207 (233)
T ss_dssp SCEEEEESSCCC-CCCTTCSEEEEEECCHHHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHHHHHSCSSCCSCCTTSEEE
T ss_pred CcEEEeccccee-EEcCCCCEEEEEECCHHHHHHHHHHHHHhccCCCCHHHHHHHHHHHHHhhhhccccccccccCcEEE
Confidence 557788864431 233447899999999999988888765543 46788999999999999999999999999888 555
Q ss_pred e
Q 006117 238 I 238 (660)
Q Consensus 238 ~ 238 (660)
+
T Consensus 208 D 208 (233)
T 3r20_A 208 D 208 (233)
T ss_dssp E
T ss_pred E
Confidence 4
No 84
>3bk7_A ABC transporter ATP-binding protein; ABC ATPase, iron-sulfur cluster, adenosine diphosphate, nucleotide-binding; HET: ADP; 2.80A {Pyrococcus abyssi} PDB: 3j15_B*
Probab=98.88 E-value=3e-10 Score=129.51 Aligned_cols=156 Identities=15% Similarity=0.177 Sum_probs=103.5
Q ss_pred ceeeeecCce-EEEEecceeeccCCcceEEEEECCCCCcHHHHHHHHHHhC-CCceEE---------EecCcccc-----
Q 006117 41 DTLSFEKGFF-IVIRACQLLAQKNHGIILVGVAGPSGAGKTVFTEKVLNFM-PSIAVI---------TMDNYNDS----- 104 (660)
Q Consensus 41 ~~ls~~~g~~-~vL~~Isl~i~~ge~~~IIGI~GpSGSGKSTLak~L~~lL-p~~g~I---------~lDg~~~~----- 104 (660)
+++++.++.. .++++++ .+++|+ ++||+||||||||||+++|++++ |+.|.+ .++|....
T Consensus 95 ~~ls~~yg~~~~~l~~vs-~i~~Ge---~~~LiG~NGsGKSTLlkiL~Gll~p~~G~~~~~~~~~~~~~~G~~~~~~~~~ 170 (607)
T 3bk7_A 95 EDCVHRYGVNAFVLYRLP-IVKDGM---VVGIVGPNGTGKTTAVKILAGQLIPNLCEDNDSWDNVIRAFRGNELQNYFER 170 (607)
T ss_dssp GSEEEECSTTCCEEECCC-CCCTTS---EEEEECCTTSSHHHHHHHHTTSSCCCTTTTCCCHHHHHHHTTTSTHHHHHHH
T ss_pred CCeEEEECCCCeeeCCCC-CCCCCC---EEEEECCCCChHHHHHHHHhCCCCCCCCccccccchhhheeCCEehhhhhhh
Confidence 5567777765 4899999 899999 99999999999999999999998 777764 23343211
Q ss_pred ----cccccccCCCCCCCch---hhHHHHHHhhhcCcc-------ccc-ccccccccccccceeeecCCccEEEEeccee
Q 006117 105 ----SRIIDGNFDDPRLTDY---DTLLENIRGLKEGKA-------VQV-PIYDFKSSSRIGYRTLEVPSSRIVIIEGIYA 169 (660)
Q Consensus 105 ----~~~i~~vfq~p~l~d~---~tl~e~L~~L~~Gk~-------I~~-PiyD~s~~~rs~~~~~~v~~a~VVIVEGila 169 (660)
...+++.+|....++. .++.+++........ +.. ...+...+..++++.+++..+++++.++.++
T Consensus 171 ~~~~~~~i~~~~q~~~~~~~~~~~tv~e~l~~~~~~~~~~~~L~~lgL~~~~~~~~~~LSGGekQRvaIAraL~~~P~lL 250 (607)
T 3bk7_A 171 LKNGEIRPVVKPQYVDLLPKAVKGKVRELLKKVDEVGKFEEVVKELELENVLDRELHQLSGGELQRVAIAAALLRKAHFY 250 (607)
T ss_dssp HHHTSCCCEEECSCGGGGGGTCCSBHHHHHHHTCCSSCHHHHHHHTTCTTGGGSBGGGCCHHHHHHHHHHHHHHSCCSEE
T ss_pred hhhhhcceEEeechhhhchhhccccHHHHhhhhHHHHHHHHHHHHcCCCchhCCChhhCCHHHHHHHHHHHHHhcCCCEE
Confidence 1123344554322211 256666542111000 111 2234555667788888899999999999999
Q ss_pred ecccccCCCCEEEEEEcChhHHHHHHHHHHHHHhCCCH
Q 006117 170 LSEKLRPLIDLRVSVTGGVHFDLVKRVFRDIQRVGQEP 207 (660)
Q Consensus 170 L~deLr~llDlkIfVdad~dirLiRRI~RDv~eRGrs~ 207 (660)
+.||+...+|. .....+.++.+++.+.|.+.
T Consensus 251 lLDEPTs~LD~-------~~~~~l~~~L~~l~~~g~tv 281 (607)
T 3bk7_A 251 FFDEPSSYLDI-------RQRLKVARVIRRLANEGKAV 281 (607)
T ss_dssp EEECTTTTCCH-------HHHHHHHHHHHHHHHTTCEE
T ss_pred EEECCcccCCH-------HHHHHHHHHHHHHHhcCCEE
Confidence 99999999997 34444555566655556554
No 85
>1uf9_A TT1252 protein; P-loop, nucleotide binding domain, structural genomics, riken structural genomics/proteomics initiative, RSGI; HET: ATP; 2.80A {Thermus thermophilus} SCOP: c.37.1.1
Probab=98.88 E-value=3.7e-10 Score=108.35 Aligned_cols=161 Identities=17% Similarity=0.180 Sum_probs=90.2
Q ss_pred CcceEEEEECCCCCcHHHHHHHHHHhCCCceEEEecCccccc-----ccccccCCC---CCCCchhhHHHHHHh----hh
Q 006117 64 HGIILVGVAGPSGAGKTVFTEKVLNFMPSIAVITMDNYNDSS-----RIIDGNFDD---PRLTDYDTLLENIRG----LK 131 (660)
Q Consensus 64 e~~~IIGI~GpSGSGKSTLak~L~~lLp~~g~I~lDg~~~~~-----~~i~~vfq~---p~l~d~~tl~e~L~~----L~ 131 (660)
.++.+|+|+|++||||||+++.|+.. +...++.|.+.... ..+...|+. ...++...+.+.+.. +.
T Consensus 6 ~~~~~I~i~G~~GsGKST~~~~La~~--g~~~id~d~~~~~~~~~~~~~i~~~~~~~~~~g~i~~~~l~~~~~~~~~~~~ 83 (203)
T 1uf9_A 6 KHPIIIGITGNIGSGKSTVAALLRSW--GYPVLDLDALAARARENKEEELKRLFPEAVVGGRLDRRALARLVFSDPERLK 83 (203)
T ss_dssp CCCEEEEEEECTTSCHHHHHHHHHHT--TCCEEEHHHHHHHHHHHTHHHHHHHCGGGEETTEECHHHHHHHHTTSHHHHH
T ss_pred cCceEEEEECCCCCCHHHHHHHHHHC--CCEEEcccHHHHHhcCChHHHHHHHHHHHHhCCCcCHHHHHHHHhCCHHHHH
Confidence 34679999999999999999999997 55577777642110 011111110 111233333222100 00
Q ss_pred cCcccccccccccccccccceeeecCCccEEEEecceeecccccCCCCEEEEEEcChhHHHHHHHHHHHHHhCCCHHHHH
Q 006117 132 EGKAVQVPIYDFKSSSRIGYRTLEVPSSRIVIIEGIYALSEKLRPLIDLRVSVTGGVHFDLVKRVFRDIQRVGQEPEEII 211 (660)
Q Consensus 132 ~Gk~I~~PiyD~s~~~rs~~~~~~v~~a~VVIVEGilaL~deLr~llDlkIfVdad~dirLiRRI~RDv~eRGrs~E~Vl 211 (660)
..+.+..|.+. ..... .....+..+||+||.+++...+.+.+|.+|||+++.++++.|...| .|.+.+++.
T Consensus 84 ~l~~~~~~~i~---~~~i~--~~~~~g~~~vi~d~~~l~~~~~~~~~d~~i~l~~~~e~~~~R~~~R----~~~~~~~~~ 154 (203)
T 1uf9_A 84 ALEAVVHPEVR---RLLME--ELSRLEAPLVFLEIPLLFEKGWEGRLHGTLLVAAPLEERVRRVMAR----SGLSREEVL 154 (203)
T ss_dssp HHHHHHHHHHH---HHHHH--HHHTCCCSEEEEECTTTTTTTCGGGSSEEEEECCCHHHHHHHHHTT----TCCTTHHHH
T ss_pred HHHHHhChHHH---HHHHH--HhhhcCCCEEEEEecceeccCchhhCCEEEEEECCHHHHHHHHHHc----CCCCHHHHH
Confidence 00112223222 01110 0001235789999988776666677899999999998876655543 367777766
Q ss_pred HHHHhccccchhhcccCCcCcCcEEEeCCC
Q 006117 212 HQISETVYPMYKAFIEPDLQTAHIKIINKF 241 (660)
Q Consensus 212 ~qy~~~v~P~~~~fIeP~k~~ADiII~N~~ 241 (660)
..+.. .++.+ +....||++|+|+.
T Consensus 155 ~~i~~-~~~~~-----~~~~~ad~vId~~~ 178 (203)
T 1uf9_A 155 ARERA-QMPEE-----EKRKRATWVLENTG 178 (203)
T ss_dssp HHHTT-SCCHH-----HHHHHCSEEECCSS
T ss_pred HHHHH-CCChh-----HHHHhCCEEEECCC
Confidence 66643 33432 22356899887653
No 86
>2vp4_A Deoxynucleoside kinase; ATP-binding, DNA synthesis, phosphoprotein, feedback inhibition, deoxyribonucleoside kinase, salvage pathway; HET: DCP; 2.20A {Drosophila melanogaster} SCOP: c.37.1.1 PDB: 1j90_A* 2jj8_A* 2vp2_A* 1oe0_A* 2vp5_A* 2vp6_A* 2vp9_A* 2vpp_A* 2vqs_A* 2vp0_A* 1ot3_A* 2jcs_A* 1zm7_A* 1zmx_A*
Probab=98.88 E-value=1.4e-11 Score=122.80 Aligned_cols=167 Identities=12% Similarity=0.090 Sum_probs=91.6
Q ss_pred ccCCcceEEEEECCCCCcHHHHHHHHHHhCCCceEEEecCcccc-----------------cccccccCCCCCCCchhhH
Q 006117 61 QKNHGIILVGVAGPSGAGKTVFTEKVLNFMPSIAVITMDNYNDS-----------------SRIIDGNFDDPRLTDYDTL 123 (660)
Q Consensus 61 ~~ge~~~IIGI~GpSGSGKSTLak~L~~lLp~~g~I~lDg~~~~-----------------~~~i~~vfq~p~l~d~~tl 123 (660)
++|. +|+|.|++||||||++++|++. .|.|.+.+.... ...++++||.+.++. .+
T Consensus 18 ~~g~---~i~i~G~~GsGKSTl~~~L~~~---~g~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~q~~~l~~--~~ 89 (230)
T 2vp4_A 18 TQPF---TVLIEGNIGSGKTTYLNHFEKY---KNDICLLTEPVEKWRNVNGVNLLELMYKDPKKWAMPFQSYVTLT--ML 89 (230)
T ss_dssp CCCE---EEEEECSTTSCHHHHHHTTGGG---TTTEEEECCTHHHHTCBTTBCHHHHHHHSHHHHHHHHHHHHHHH--HH
T ss_pred CCce---EEEEECCCCCCHHHHHHHHHhc---cCCeEEEecCHHHhhcccCCChHHHHHhChHhhhhhhHHHHHHH--HH
Confidence 4455 9999999999999999999987 233444443211 011223333221111 11
Q ss_pred HHHHHh-----hhcCcccccccccccccccccceeeecCCccEEEEecceeecc-cccCCCCEEEEEEcChhHHHHHHHH
Q 006117 124 LENIRG-----LKEGKAVQVPIYDFKSSSRIGYRTLEVPSSRIVIIEGIYALSE-KLRPLIDLRVSVTGGVHFDLVKRVF 197 (660)
Q Consensus 124 ~e~L~~-----L~~Gk~I~~PiyD~s~~~rs~~~~~~v~~a~VVIVEGilaL~d-eLr~llDlkIfVdad~dirLiRRI~ 197 (660)
.+++.. +..+..+..+.|.++...+.++ .+.+..+.++++++.+.. ......|+.||+++|.++++.|...
T Consensus 90 ~~~~~~~i~~~l~~~r~v~~dry~~s~~ayq~~---~l~~~~~~~~~~~~~~~~~~~~~~pD~vi~Ld~~~e~~~~Ri~~ 166 (230)
T 2vp4_A 90 QSHTAPTNKKLKIMERSIFSARYCFVENMRRNG---SLEQGMYNTLEEWYKFIEESIHVQADLIIYLRTSPEVAYERIRQ 166 (230)
T ss_dssp HHHHCCCCSSEEEEESCHHHHHHTHHHHHHHHT---SSCHHHHHHHHHHHHHHHHHBCCCCSEEEEEECCHHHHHHHHHH
T ss_pred HHHHhccccCceeecCCccccHHHHHHHHHHcC---CCChHHHHHHHHHHHHHHHhhcCCCCEEEEEeCCHHHHHHHHHH
Confidence 111111 1223455556666665443321 234445566677665543 3566799999999999997766433
Q ss_pred HHHHHhCCCHHHH-HHHHHhccccchhhcccCC--cCcCc-EEEeCCCCC
Q 006117 198 RDIQRVGQEPEEI-IHQISETVYPMYKAFIEPD--LQTAH-IKIINKFNP 243 (660)
Q Consensus 198 RDv~eRGrs~E~V-l~qy~~~v~P~~~~fIeP~--k~~AD-iII~N~~~p 243 (660)
||++.+.. -..|.++++..|.++.+.. ...++ ++|+++.++
T Consensus 167 -----R~r~~e~~~~~~~~~rv~~~~~~~~~~~~~~~~~~~~vId~~~~~ 211 (230)
T 2vp4_A 167 -----RARSEESCVPLKYLQELHELHEDWLIHQRRPQSCKVLVLDADLNL 211 (230)
T ss_dssp -----HCCGGGTTCCHHHHHHHHHHHHHHHTSCCSSCCCEEEEEECCC--
T ss_pred -----cCCcccccCcHHHHHHHHHHHHHHHHHhcccCCCCEEEEECCCCH
Confidence 35543321 1145566777777776432 34455 666655443
No 87
>3ake_A Cytidylate kinase; CMP kinase, CMP complex, open conformation, nucleotide metab transferase; HET: C5P; 1.50A {Thermus thermophilus} PDB: 3akc_A* 3akd_A*
Probab=98.87 E-value=6.6e-10 Score=106.97 Aligned_cols=73 Identities=11% Similarity=-0.013 Sum_probs=50.1
Q ss_pred cEEEEecceeecccccCCCCEEEEEEcChhHHHHHHHHHHHHHhCCCHHHHHHHHHhccccchhhcccCCcCcCc-EEEe
Q 006117 160 RIVIIEGIYALSEKLRPLIDLRVSVTGGVHFDLVKRVFRDIQRVGQEPEEIIHQISETVYPMYKAFIEPDLQTAH-IKII 238 (660)
Q Consensus 160 ~VVIVEGilaL~deLr~llDlkIfVdad~dirLiRRI~RDv~eRGrs~E~Vl~qy~~~v~P~~~~fIeP~k~~AD-iII~ 238 (660)
..+|+||..++ ..+.+.+|++|||++|.+++..|+..|+ +.+.+++.+.+..+....+..+ ...|| ++|+
T Consensus 119 ~~~vi~g~~~~-~~~~~~~d~~i~l~a~~e~~~~R~~~r~----~~~~~~~~~~~~~R~~~~~~~~----~~~ad~~~Id 189 (208)
T 3ake_A 119 PPFVAEGRDMG-TAVFPEAAHKFYLTASPEVRAWRRARER----PQAYEEVLRDLLRRDERDKAQS----APAPDALVLD 189 (208)
T ss_dssp SCEEEEESSCC-CCCCTTCSEEEEEECCHHHHHHHHHHTS----SSCHHHHHHHHHHHHHTC--CC----CCCTTCEEEE
T ss_pred CCEEEEcccee-EEEecCCcEEEEEECCHHHHHHHHHhhc----ccCHHHHHHHHHHHHHHHhhcc----cCCCCEEEEE
Confidence 57899999876 4566779999999999999877665552 4577777777754422222222 45677 8887
Q ss_pred CCC
Q 006117 239 NKF 241 (660)
Q Consensus 239 N~~ 241 (660)
|+.
T Consensus 190 ~~~ 192 (208)
T 3ake_A 190 TGG 192 (208)
T ss_dssp TTT
T ss_pred CCC
Confidence 663
No 88
>1htw_A HI0065; nucleotide-binding fold, structural genomics, structure 2 function project, S2F, unknown function; HET: ADP; 1.70A {Haemophilus influenzae} SCOP: c.37.1.18 PDB: 1fl9_A
Probab=98.85 E-value=7e-11 Score=112.56 Aligned_cols=86 Identities=19% Similarity=0.089 Sum_probs=67.8
Q ss_pred cceeeeecCceEEEEecceeeccCCcceEEEEECCCCCcHHHHHHHHHHhCCCceEEEecCccccc--ccccccCCCCCC
Q 006117 40 EDTLSFEKGFFIVIRACQLLAQKNHGIILVGVAGPSGAGKTVFTEKVLNFMPSIAVITMDNYNDSS--RIIDGNFDDPRL 117 (660)
Q Consensus 40 ~~~ls~~~g~~~vL~~Isl~i~~ge~~~IIGI~GpSGSGKSTLak~L~~lLp~~g~I~lDg~~~~~--~~i~~vfq~p~l 117 (660)
..++++.++...++++++|.+++|+ +++|+||||||||||+++|++.+|..|.|..+++.... ....+++|++.+
T Consensus 10 ~~~~~~~~g~~~~l~~vsl~i~~Ge---~v~L~G~nGaGKTTLlr~l~g~l~~~G~V~~~g~~i~~~~~~~~~~~q~~~l 86 (158)
T 1htw_A 10 DEFSMLRFGKKFAEILLKLHTEKAI---MVYLNGDLGAGKTTLTRGMLQGIGHQGNVKSPTYTLVEEYNIAGKMIYHFDL 86 (158)
T ss_dssp SHHHHHHHHHHHHHHHHHHCCSSCE---EEEEECSTTSSHHHHHHHHHHHTTCCSCCCCCTTTCEEEEEETTEEEEEEEC
T ss_pred CHHHHHHHHHHHHHhccccccCCCC---EEEEECCCCCCHHHHHHHHHHhCCCCCeEEECCEeeeeeccCCCcceecccc
Confidence 3444455566678999999999999 99999999999999999999999888999999875432 112367888888
Q ss_pred CchhhHHHHHHh
Q 006117 118 TDYDTLLENIRG 129 (660)
Q Consensus 118 ~d~~tl~e~L~~ 129 (660)
+ ..++.+++..
T Consensus 87 ~-~ltv~e~l~~ 97 (158)
T 1htw_A 87 Y-RLADPEELEF 97 (158)
T ss_dssp T-TCSCTTHHHH
T ss_pred c-cCCcHHHHHH
Confidence 7 6777777654
No 89
>2h92_A Cytidylate kinase; rossmann fold, transferase; HET: C5P PG4; 2.30A {Staphylococcus aureus}
Probab=98.83 E-value=8.7e-09 Score=100.56 Aligned_cols=80 Identities=16% Similarity=0.110 Sum_probs=58.7
Q ss_pred cEEEEecceeecccccCCCCEEEEEEcChhHHHHHHHHHHHHHhCC--CHHHHHHHHHhccccchhhcccCCcCcCc-EE
Q 006117 160 RIVIIEGIYALSEKLRPLIDLRVSVTGGVHFDLVKRVFRDIQRVGQ--EPEEIIHQISETVYPMYKAFIEPDLQTAH-IK 236 (660)
Q Consensus 160 ~VVIVEGilaL~deLr~llDlkIfVdad~dirLiRRI~RDv~eRGr--s~E~Vl~qy~~~v~P~~~~fIeP~k~~AD-iI 236 (660)
..++++|..+ ...+.+.+|++|||+++.+++..|++.+ ...||. +.+++..++..+..++..+.+.|....+| ++
T Consensus 119 ~~~vi~g~~~-~~~~~~~~~~vi~l~a~~e~~~~R~~~~-~~~r~~~~~~e~~~~~~~~r~~~d~~r~~~~~~~~~d~~~ 196 (219)
T 2h92_A 119 KGIVMDGRDI-GTVVLPDADLKVYMIASVEERAERRYKD-NQLRGIESNFEDLKRDIEARDQYDMNREISPLRKADDAVT 196 (219)
T ss_dssp CCEEEEESSC-CCCCCTTCSEEEEEECCHHHHHHHHHHH-HHHTTCCCCHHHHHHHHHHHHHHHHHCSSSCSCCCTTCEE
T ss_pred CcEEEEcCCc-cceecCCCCEEEEEECCHHHHHHHHHHH-HHhcCcccCHHHHHHHHHHHHHhhhhhhccccccCCCeEE
Confidence 4577888633 2345667899999999999987776655 335677 78888888877766777777778777777 88
Q ss_pred EeCCC
Q 006117 237 IINKF 241 (660)
Q Consensus 237 I~N~~ 241 (660)
|+|+.
T Consensus 197 Id~~~ 201 (219)
T 2h92_A 197 LDTTG 201 (219)
T ss_dssp EECTT
T ss_pred EECCC
Confidence 87653
No 90
>2j41_A Guanylate kinase; GMP, GMK, transferase, ATP-binding, nucleotide- binding; HET: 5GP; 1.9A {Staphylococcus aureus}
Probab=98.81 E-value=1.6e-09 Score=104.11 Aligned_cols=160 Identities=17% Similarity=0.164 Sum_probs=69.6
Q ss_pred eeccCCcceEEEEECCCCCcHHHHHHHHHHhC-CCce-EEEecCcccc---cccccccCCCCCCCchhhHHHHHHhhhcC
Q 006117 59 LAQKNHGIILVGVAGPSGAGKTVFTEKVLNFM-PSIA-VITMDNYNDS---SRIIDGNFDDPRLTDYDTLLENIRGLKEG 133 (660)
Q Consensus 59 ~i~~ge~~~IIGI~GpSGSGKSTLak~L~~lL-p~~g-~I~lDg~~~~---~~~i~~vfq~p~l~d~~tl~e~L~~L~~G 133 (660)
.+.+|. +|+|+|||||||||++++|++.+ |+.+ .+........ ....+++|+++..+. .. ...+
T Consensus 2 ~i~~g~---~i~l~G~~GsGKSTl~~~L~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~---~~~~ 70 (207)
T 2j41_A 2 DNEKGL---LIVLSGPSGVGKGTVRKRIFEDPSTSYKYSISMTTRQMREGEVDGVDYFFKTRDAFE-----AL---IKDD 70 (207)
T ss_dssp --CCCC---EEEEECSTTSCHHHHHHHHHHCTTCCEECCCCEECSCCCTTCCBTTTBEECCHHHHH-----HH---HHTT
T ss_pred CCCCCC---EEEEECCCCCCHHHHHHHHHHhhCCCeEEecccccCCCCCCccCCCceEEcCHHHHH-----HH---HHcC
Confidence 355677 99999999999999999999998 6544 2211111110 112455665433221 11 2233
Q ss_pred cccccccccccccccccce-eeecCCccEEEEecceeecccccCCC-C-EEEEEEcC-hhHHHHHHHHHHHHHhC-CCHH
Q 006117 134 KAVQVPIYDFKSSSRIGYR-TLEVPSSRIVIIEGIYALSEKLRPLI-D-LRVSVTGG-VHFDLVKRVFRDIQRVG-QEPE 208 (660)
Q Consensus 134 k~I~~PiyD~s~~~rs~~~-~~~v~~a~VVIVEGilaL~deLr~ll-D-lkIfVdad-~dirLiRRI~RDv~eRG-rs~E 208 (660)
..+..+.+........... ...+.....+|+|+.+.....+...+ | +.+|+..+ .++ +.+|+.. |+ .+.+
T Consensus 71 ~~~~~~~~~~~~~g~~~~~i~~~l~~g~~vv~d~~~~~~~~~~~~~~~~~~i~~~~~~~~~-~~~Rl~~----R~~~~~~ 145 (207)
T 2j41_A 71 QFIEYAEYVGNYYGTPVQYVKDTMDEGHDVFLEIEVEGAKQVRKKFPDALFIFLAPPSLEH-LRERLVG----RGTESDE 145 (207)
T ss_dssp CEEEEEEETTEEEEEEHHHHHHHHHTTCEEEEECCGGGHHHHHHHCTTSEEEEEECCC----------------------
T ss_pred CeEEEEeECCeecCCCHHHHHHHHHcCCeEEEEECHHHHHHHHHhcCCeEEEEEECCCHHH-HHHHHHh----cCCCCHH
Confidence 4444443322111000000 00123346889998876655555444 7 45555533 334 3344322 23 3444
Q ss_pred HHHHHHHhccccchhhcccCCcCcCcEEEeCC
Q 006117 209 EIIHQISETVYPMYKAFIEPDLQTAHIKIINK 240 (660)
Q Consensus 209 ~Vl~qy~~~v~P~~~~fIeP~k~~ADiII~N~ 240 (660)
.+..++ ...++... ....||++|.|+
T Consensus 146 ~~~~rl-~~~~~~~~-----~~~~~d~vI~n~ 171 (207)
T 2j41_A 146 KIQSRI-NEARKEVE-----MMNLYDYVVVND 171 (207)
T ss_dssp -----------CGGG-----GGGGCSEEEECS
T ss_pred HHHHHH-HHHHHHHh-----ccccCCEEEECC
Confidence 443333 22223221 235789999875
No 91
>3ux8_A Excinuclease ABC, A subunit; UVRA, nucleotide excision repair, DNA repair, ABC ATPase, DN binding protein; HET: ADP; 2.10A {Geobacillus}
Probab=98.79 E-value=9e-10 Score=126.42 Aligned_cols=148 Identities=11% Similarity=0.090 Sum_probs=86.3
Q ss_pred eEEEEecceeeccCCcceEEEEECCCCCcHHHHH---------------------HHHHHhC-CC-------ceEEEecC
Q 006117 50 FIVIRACQLLAQKNHGIILVGVAGPSGAGKTVFT---------------------EKVLNFM-PS-------IAVITMDN 100 (660)
Q Consensus 50 ~~vL~~Isl~i~~ge~~~IIGI~GpSGSGKSTLa---------------------k~L~~lL-p~-------~g~I~lDg 100 (660)
..+|++|||.+++|+ ++||+||||||||||+ +.+.++. |+ .+.+.+++
T Consensus 31 ~~~L~~vsl~i~~Ge---~~~liGpNGaGKSTLl~~~~~~~~~~~~~~~l~~~~~~~l~~l~~~~~~~i~~~~~~i~~~~ 107 (670)
T 3ux8_A 31 AHNLKNIDVEIPRGK---LVVLTGLSGSGKSSLAFDTIYAEGQRRYVESLSAYARQFLGQMEKPDVDAIEGLSPAISIDQ 107 (670)
T ss_dssp STTCCSEEEEEETTS---EEEEECSTTSSHHHHHTTTHHHHHHHHHHTC--------------CCCSEEESCCCEEEESS
T ss_pred ccceeccEEEECCCC---EEEEECCCCCCHHHHhcccccccccccccccchhhhhhhhcccccCCccceeccccceEecC
Confidence 357999999999999 9999999999999997 6666665 55 34455555
Q ss_pred cccc---cccccccCCCCCC-------------------CchhhHHHHHHhhhc----C--c------------------
Q 006117 101 YNDS---SRIIDGNFDDPRL-------------------TDYDTLLENIRGLKE----G--K------------------ 134 (660)
Q Consensus 101 ~~~~---~~~i~~vfq~p~l-------------------~d~~tl~e~L~~L~~----G--k------------------ 134 (660)
.... ...+++++|.+.. +...++.+++..... . .
T Consensus 108 ~~~~~~~~~~ig~v~q~~~~~~~~~~~~~~~~~~~~~~~~~~~tv~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ 187 (670)
T 3ux8_A 108 KTTSRNPRSTVGTVTEIYDYLRLLFARIGRLVGGKHIGEVTAMSVTEALAFFDGLELTEKEAQIARLILREIRDRLGFLQ 187 (670)
T ss_dssp CC-----CCBHHHHTTCC-------------------------CC--------------------------CHHHHHHHH
T ss_pred chhhccchhceeeeechhhhHHHHHhhhcccccccccccccCCcHHHHHHHhhccccchhhhHHHHHHHHHHHHHHHHHH
Confidence 4221 1234455554332 223445555543210 0 0
Q ss_pred ccccc--cccccccccccceeeecCCccEEEEecc--eeecccccCCCCEEEEEEcChhHHHHHHHHHHHHHhCCCH
Q 006117 135 AVQVP--IYDFKSSSRIGYRTLEVPSSRIVIIEGI--YALSEKLRPLIDLRVSVTGGVHFDLVKRVFRDIQRVGQEP 207 (660)
Q Consensus 135 ~I~~P--iyD~s~~~rs~~~~~~v~~a~VVIVEGi--laL~deLr~llDlkIfVdad~dirLiRRI~RDv~eRGrs~ 207 (660)
.+... ..+...+..++++.+++..++.++.++. +++.||+...+|. .....+..+.+++.+.|.+.
T Consensus 188 ~~gL~~~~~~~~~~~LSGGe~QRv~iArAL~~~p~~~lLlLDEPtsgLD~-------~~~~~l~~~l~~l~~~g~tv 257 (670)
T 3ux8_A 188 NVGLDYLTLSRSAGTLSGGEAQRIRLATQIGSRLTGVLYVLDEPSIGLHQ-------RDNDRLIATLKSMRDLGNTL 257 (670)
T ss_dssp HTTCTTCCTTCBGGGSCHHHHHHHHHHHHHHTCCCSCEEEEECTTTTCCG-------GGHHHHHHHHHHHHHTTCEE
T ss_pred HcCCchhhhcCCcccCCHHHHHHHHHHHHHhhCCCCCEEEEECCccCCCH-------HHHHHHHHHHHHHHHcCCEE
Confidence 00001 1244456677788888888888888876 8889999999997 45556666667766667665
No 92
>3tj7_A GBAA_1210 protein; structural genomics, adenosine monophosphate, center for STR genomics of infectious diseases, csgid; HET: AMP; 2.10A {Bacillus anthracis} PDB: 3sy3_A*
Probab=98.76 E-value=1.1e-07 Score=93.98 Aligned_cols=119 Identities=13% Similarity=0.106 Sum_probs=97.2
Q ss_pred ceeeeeecCCCCCcccccceEEEeecCCeEEEEEeeeecCCCceeeeeEEEEeeh---------------hhHHHHhhcC
Q 006117 279 ETYDIYLLPPGEDPDACQSYLRMRNRDGKYNLMFEEWVTDSPFIISPRITFEVSV---------------RLLGGLMALG 343 (660)
Q Consensus 279 ~~~DIYl~pP~~d~~~tde~LRvR~~dg~~~Ltykg~~~d~~fi~rp~~efeV~v---------------~~~~gL~~LG 343 (660)
...++||..|..++...+.+||+|..|+.+.+|+|+|..++ +++.+.+++. .+.+.|..+|
T Consensus 35 ~~~n~YfDTpd~~L~~~~~~LRiR~~~~~~~~TlK~~~~~g----~~E~~~~l~~~ea~~~l~~~~~p~~~i~~~l~~~g 110 (195)
T 3tj7_A 35 KQVNHYFETPNSSLKEAGSALRIRHKGETYTLTLKQPAEVG----LLETHQVVTENEAKMMMETNVIISGAVMNQLCKLQ 110 (195)
T ss_dssp EEEEEEEECTTCHHHHTTCEEEEEEETTEEEEEEEEECSSS----EEEEEEEECHHHHHHHHHSSCCCSSHHHHHHHHHT
T ss_pred EEEEEEEeCCcHhHHhCCCEEEEEeECCeEEEEEeeCCCCC----ceEEEeeCCHHHHHHHhhcCCCChHHHHHHHHHcC
Confidence 44589999999999999999999999999999999998763 6777777763 4666789999
Q ss_pred CeE-----EEEEEEeeeEeecCcEEEEeecccccCcc-e-EEEEec----cHHHHHHHHHHcCCCCCcc
Q 006117 344 YTI-----ATILKRSSHIFYDDRVCVKTDWLEQLNRK-Y-VQVQGR----DRLYVKYVGEQLGLDGSYV 401 (660)
Q Consensus 344 y~~-----aa~V~R~re~y~~g~~~i~lD~ve~Lg~~-F-veI~g~----~~~~v~~~~~~Lgl~G~~i 401 (660)
|.. ++.+.+.|..|...+-++|+|+++++|.. | +|++.. .++.+.++.+++||...+.
T Consensus 111 ~~~~~l~~~g~l~t~R~e~~~~~g~l~LD~~~y~~~~dyElE~E~~d~~~~~~~~~~lL~~~gi~~~~~ 179 (195)
T 3tj7_A 111 IPVSALTYMGSLTTERAETLFEGGTLVFDHSFYYNHDDYEIEFEVQDEETGKAAFIHLLKQHNIPIRHT 179 (195)
T ss_dssp CCGGGCEEEEEEEEEEEEEEETTEEEEEEEEECSSCEEEEEEEEESCHHHHHHHHHHHHHHTTCCCCC-
T ss_pred CCccceEEEEEEEEEEEEEEecCCEEEEEEecCCCcEEEEEEEEeCCHHHHHHHHHHHHHHCCCCcCCC
Confidence 765 58898888888777789999999999933 5 555532 6778999999999997653
No 93
>3j16_B RLI1P; ribosome recycling, translation, eukarya, ribosome; HET: ATP; 7.20A {Saccharomyces cerevisiae}
Probab=98.74 E-value=4e-09 Score=120.25 Aligned_cols=145 Identities=12% Similarity=0.004 Sum_probs=98.2
Q ss_pred eEEEEecceeeccCCc--ceEEEEECCCCCcHHHHHHHHHHhC-CCceEEEecCcccccccccccCCCCCCCchhhHHHH
Q 006117 50 FIVIRACQLLAQKNHG--IILVGVAGPSGAGKTVFTEKVLNFM-PSIAVITMDNYNDSSRIIDGNFDDPRLTDYDTLLEN 126 (660)
Q Consensus 50 ~~vL~~Isl~i~~ge~--~~IIGI~GpSGSGKSTLak~L~~lL-p~~g~I~lDg~~~~~~~i~~vfq~p~l~d~~tl~e~ 126 (660)
..++++++|.+.+|+- .-++||+||||||||||+++|++++ |+.|.. .....+++++|+.......++.++
T Consensus 360 ~~~l~~vsl~v~~G~~~~GEiv~iiG~NGsGKSTLlk~l~Gl~~p~~G~~------~~~~~i~~~~q~~~~~~~~tv~e~ 433 (608)
T 3j16_B 360 KKTQGDFVLNVEEGEFSDSEILVMMGENGTGKTTLIKLLAGALKPDEGQD------IPKLNVSMKPQKIAPKFPGTVRQL 433 (608)
T ss_dssp EEECSSCEEEECCEECCTTCEEEEESCTTSSHHHHHHHHHTSSCCSBCCC------CCSCCEEEECSSCCCCCCSBHHHH
T ss_pred ccccCceEEEEecCccccceEEEEECCCCCcHHHHHHHHhcCCCCCCCcC------ccCCcEEEecccccccCCccHHHH
Confidence 3578899999988820 0189999999999999999999998 776641 122346777887655444566666
Q ss_pred HHhhhcCcc------------cc-cccccccccccccceeeecCCccEEEEecceeecccccCCCCEEEEEEcChhHHHH
Q 006117 127 IRGLKEGKA------------VQ-VPIYDFKSSSRIGYRTLEVPSSRIVIIEGIYALSEKLRPLIDLRVSVTGGVHFDLV 193 (660)
Q Consensus 127 L~~L~~Gk~------------I~-~PiyD~s~~~rs~~~~~~v~~a~VVIVEGilaL~deLr~llDlkIfVdad~dirLi 193 (660)
+.....+.. +. ....+...+..++++.+++..++.++.++.+++.||+...+|. .....+
T Consensus 434 ~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~LSGGqkQRv~iAraL~~~p~lLlLDEPT~gLD~-------~~~~~i 506 (608)
T 3j16_B 434 FFKKIRGQFLNPQFQTDVVKPLRIDDIIDQEVQHLSGGELQRVAIVLALGIPADIYLIDEPSAYLDS-------EQRIIC 506 (608)
T ss_dssp HHHHCSSTTTSHHHHHHTHHHHTSTTTSSSBSSSCCHHHHHHHHHHHHTTSCCSEEEECCTTTTCCH-------HHHHHH
T ss_pred HHHHhhcccccHHHHHHHHHHcCChhhhcCChhhCCHHHHHHHHHHHHHHhCCCEEEEECCCCCCCH-------HHHHHH
Confidence 543111110 00 0123445566778888888888999999999999999999997 333344
Q ss_pred HHHHHHHH-HhCCCH
Q 006117 194 KRVFRDIQ-RVGQEP 207 (660)
Q Consensus 194 RRI~RDv~-eRGrs~ 207 (660)
.++.++.. +.|.+.
T Consensus 507 ~~ll~~l~~~~g~tv 521 (608)
T 3j16_B 507 SKVIRRFILHNKKTA 521 (608)
T ss_dssp HHHHHHHHHHHTCEE
T ss_pred HHHHHHHHHhCCCEE
Confidence 45555543 456654
No 94
>3a00_A Guanylate kinase, GMP kinase; domain movement, dimerization, acetylation, ATP-binding, nucleotide-binding, phosphoprotein, transferase; 1.80A {Saccharomyces cerevisiae} PDB: 1ex6_A* 1ex7_A 1gky_A* 2zzz_A 3sqk_A 4f4j_A 2zzy_A
Probab=98.74 E-value=6e-09 Score=100.12 Aligned_cols=157 Identities=19% Similarity=0.217 Sum_probs=58.9
Q ss_pred EEEEECCCCCcHHHHHHHHHHhCCCceEEEecCccccc-----ccccccCCCCCCCchhhHHHHHHhhhcCccccccccc
Q 006117 68 LVGVAGPSGAGKTVFTEKVLNFMPSIAVITMDNYNDSS-----RIIDGNFDDPRLTDYDTLLENIRGLKEGKAVQVPIYD 142 (660)
Q Consensus 68 IIGI~GpSGSGKSTLak~L~~lLp~~g~I~lDg~~~~~-----~~i~~vfq~p~l~d~~tl~e~L~~L~~Gk~I~~PiyD 142 (660)
+++|+|||||||||++++|+++++.............. ...++.|+.+.. +...+. .+..+....+.
T Consensus 3 ii~l~GpsGaGKsTl~~~L~~~~~~~~~~~~~~~tr~~~~ge~~g~~~~~~~~~~-----~~~~~~---~~~~~e~~~~~ 74 (186)
T 3a00_A 3 PIVISGPSGTGKSTLLKKLFAEYPDSFGFSVSSTTRTPRAGEVNGKDYNFVSVDE-----FKSMIK---NNEFIEWAQFS 74 (186)
T ss_dssp CEEEESSSSSSHHHHHHHHHHHCGGGEECCCEEECSCCCTTCCBTTTBEECCHHH-----HHHHHH---TTCEEEEEEET
T ss_pred EEEEECCCCCCHHHHHHHHHhhCCccceEEeeccccCCCCCccCCeeeeecCHHH-----HHHHHh---hcceeeEEEEe
Confidence 89999999999999999999998522211111111111 122333333221 222111 12222111111
Q ss_pred ccc-cccccceeeecCCccEEEE----ecceeecccccCCCCEEEEEEcChhHHHHHHHHHHHHHhCCCHHHHHHHHHhc
Q 006117 143 FKS-SSRIGYRTLEVPSSRIVII----EGIYALSEKLRPLIDLRVSVTGGVHFDLVKRVFRDIQRVGQEPEEIIHQISET 217 (660)
Q Consensus 143 ~s~-~~rs~~~~~~v~~a~VVIV----EGilaL~deLr~llDlkIfVdad~dirLiRRI~RDv~eRGrs~E~Vl~qy~~~ 217 (660)
... +.....-...+.....+++ +|.-.+.. ....--..|||.+|....+.+|+. .||...++.+.+....
T Consensus 75 ~~~yg~~~~~i~~~l~~g~~~il~~~~~g~~~l~~-~~~~~~~~i~i~~p~~~~l~~Rl~----~Rg~~~~~~i~~rl~~ 149 (186)
T 3a00_A 75 GNYYGSTVASVKQVSKSGKTCILDIDMQGVKSVKA-IPELNARFLFIAPPSVEDLKKRLE----GRGTETEESINKRLSA 149 (186)
T ss_dssp TEEEEEEHHHHHHHHHTTCEEEEECCHHHHHHHHT-CGGGCCEEEEEECSCC----------------------------
T ss_pred ceeccCcHHHHHHHHHcCCeEEEEEcHHHHHHHHH-hcCCCeEEEEEECcCHHHHHHHHH----hcCCCCHHHHHHHHHH
Confidence 110 0000000111234456777 44433322 011223569999987555666654 4566655555544344
Q ss_pred cccchhhcccCCcCcCcEEEeCC
Q 006117 218 VYPMYKAFIEPDLQTAHIKIINK 240 (660)
Q Consensus 218 v~P~~~~fIeP~k~~ADiII~N~ 240 (660)
.+... .+.. ...+|++|.|+
T Consensus 150 ~~~~~-~~~~--~~~~d~vi~nd 169 (186)
T 3a00_A 150 AQAEL-AYAE--TGAHDKVIVND 169 (186)
T ss_dssp ------------CCCCSEEEECS
T ss_pred HHHHH-Hhhc--ccCCcEEEECc
Confidence 33221 1111 36789999876
No 95
>3lw7_A Adenylate kinase related protein (ADKA-like); AMP, PSI, MCSG, structural genomics, midwest center for structural genomics; HET: AMP; 2.30A {Sulfolobus solfataricus} PDB: 3h0k_A
Probab=98.72 E-value=4.1e-09 Score=97.32 Aligned_cols=157 Identities=19% Similarity=0.216 Sum_probs=81.2
Q ss_pred eEEEEECCCCCcHHHHHHHHHHhCCCceEEEecCcccccccccccCCCCCCCchhhHHHHHHhhhcCccccccccccccc
Q 006117 67 ILVGVAGPSGAGKTVFTEKVLNFMPSIAVITMDNYNDSSRIIDGNFDDPRLTDYDTLLENIRGLKEGKAVQVPIYDFKSS 146 (660)
Q Consensus 67 ~IIGI~GpSGSGKSTLak~L~~lLp~~g~I~lDg~~~~~~~i~~vfq~p~l~d~~tl~e~L~~L~~Gk~I~~PiyD~s~~ 146 (660)
.+|+|+|++||||||+++.| ..+ +...+++|+.......... ....+.....+.+... .+..+.... ..
T Consensus 2 ~~I~l~G~~GsGKsT~a~~L-~~~-g~~~i~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~-~~~~~~~~~----~~ 70 (179)
T 3lw7_A 2 KVILITGMPGSGKSEFAKLL-KER-GAKVIVMSDVVRKRYSIEA----KPGERLMDFAKRLREI-YGDGVVARL----CV 70 (179)
T ss_dssp CEEEEECCTTSCHHHHHHHH-HHT-TCEEEEHHHHHHHHHHHHC-------CCHHHHHHHHHHH-HCTTHHHHH----HH
T ss_pred cEEEEECCCCCCHHHHHHHH-HHC-CCcEEEHhHHHHHHHHhcC----CChhHHHHHHHHHHhh-CCHHHHHHH----HH
Confidence 48999999999999999999 665 4446666554221100000 0011111111111110 011110000 00
Q ss_pred ccccceeeecCCccEEEEecceeec--ccccC---CCCEEEEEEcChhHHHHHHHHHHHHHhCCCHHHHHHHHHhccccc
Q 006117 147 SRIGYRTLEVPSSRIVIIEGIYALS--EKLRP---LIDLRVSVTGGVHFDLVKRVFRDIQRVGQEPEEIIHQISETVYPM 221 (660)
Q Consensus 147 ~rs~~~~~~v~~a~VVIVEGilaL~--deLr~---llDlkIfVdad~dirLiRRI~RDv~eRGrs~E~Vl~qy~~~v~P~ 221 (660)
..........+|++|..... +.+.. .-+..||+++|.++++.|...|+....+.+.+++.+++....
T Consensus 71 -----~~l~~~~~~~vi~dg~~~~~~~~~l~~~~~~~~~~i~l~~~~~~~~~R~~~R~~~~~~~~~~~~~~r~~~~~--- 142 (179)
T 3lw7_A 71 -----EELGTSNHDLVVFDGVRSLAEVEEFKRLLGDSVYIVAVHSPPKIRYKRMIERLRSDDSKEISELIRRDREEL--- 142 (179)
T ss_dssp -----HHHCSCCCSCEEEECCCCHHHHHHHHHHHCSCEEEEEEECCHHHHHHHHHTCC----CCCHHHHHHHHHHHH---
T ss_pred -----HHHHhcCCCeEEEeCCCCHHHHHHHHHHhCCCcEEEEEECCHHHHHHHHHhccCCCCcchHHHHHHHHHhhh---
Confidence 00001334678999972221 12222 345899999999998777666654444567888887763321
Q ss_pred hhhcccCCcCcCcEEEeCCCCC
Q 006117 222 YKAFIEPDLQTAHIKIINKFNP 243 (660)
Q Consensus 222 ~~~fIeP~k~~ADiII~N~~~p 243 (660)
+..+.+....||++|+|+.++
T Consensus 143 -~~~~~~~~~~ad~vId~~~~~ 163 (179)
T 3lw7_A 143 -KLGIGEVIAMADYIITNDSNY 163 (179)
T ss_dssp -HHTHHHHHHTCSEEEECCSCH
T ss_pred -ccChHhHHHhCCEEEECCCCH
Confidence 111334457899999877533
No 96
>3lnc_A Guanylate kinase, GMP kinase; ALS collaborative crystallography, emerald biostructures, ATP-binding, cytoplasm, nucleotide-binding; HET: 5GP; 1.95A {Anaplasma phagocytophilum}
Probab=98.71 E-value=6.1e-10 Score=110.35 Aligned_cols=38 Identities=24% Similarity=0.329 Sum_probs=22.7
Q ss_pred EEEEecceeeccCCcceEEEEECCCCCcHHHHHHHHH-HhCC
Q 006117 51 IVIRACQLLAQKNHGIILVGVAGPSGAGKTVFTEKVL-NFMP 91 (660)
Q Consensus 51 ~vL~~Isl~i~~ge~~~IIGI~GpSGSGKSTLak~L~-~lLp 91 (660)
....++||.+++|+ ++||+|||||||||++++|+ +.+|
T Consensus 15 ~~~~~~sl~v~~G~---ii~l~Gp~GsGKSTl~~~L~~~~~~ 53 (231)
T 3lnc_A 15 QTQGPGSMLKSVGV---ILVLSSPSGCGKTTVANKLLEKQKN 53 (231)
T ss_dssp -------CCEECCC---EEEEECSCC----CHHHHHHC----
T ss_pred cccCCCCcccCCCC---EEEEECCCCCCHHHHHHHHHhcCCC
Confidence 34689999999999 99999999999999999999 9874
No 97
>2iw3_A Elongation factor 3A; acetylation, ATP-binding, protein biosynthesis, nucleotide-binding, phosphorylation, RNA- binding, rRNA-binding; HET: ADP; 2.4A {Saccharomyces cerevisiae} PDB: 2iwh_A* 2ix3_A 2ix8_A
Probab=98.70 E-value=5.3e-09 Score=124.55 Aligned_cols=130 Identities=17% Similarity=0.184 Sum_probs=92.0
Q ss_pred ceeeeecCceEEEEecceeeccCCcceEEEEECCCCCcHHHHHHHHHHhCCCceEEEecCcccc-cccccccCCCC-CCC
Q 006117 41 DTLSFEKGFFIVIRACQLLAQKNHGIILVGVAGPSGAGKTVFTEKVLNFMPSIAVITMDNYNDS-SRIIDGNFDDP-RLT 118 (660)
Q Consensus 41 ~~ls~~~g~~~vL~~Isl~i~~ge~~~IIGI~GpSGSGKSTLak~L~~lLp~~g~I~lDg~~~~-~~~i~~vfq~p-~l~ 118 (660)
.++++.++...+|+++||.+++|+ ++||+|+||||||||+++|++- .| +|+... ...+.+++|++ .++
T Consensus 439 ~~ls~~yg~~~iL~~vsl~I~~Ge---~v~LiGpNGsGKSTLLk~LagG-----~i--~g~~~~~~~~~~~v~q~~~~~~ 508 (986)
T 2iw3_A 439 CEFSLAYGAKILLNKTQLRLKRAR---RYGICGPNGCGKSTLMRAIANG-----QV--DGFPTQEECRTVYVEHDIDGTH 508 (986)
T ss_dssp EEEEEEETTEEEEEEEEEEEETTC---EEEEECSTTSSHHHHHHHHHHT-----CS--TTCCCTTTSCEEETTCCCCCCC
T ss_pred eeEEEEECCEEeEecceEEEcCCC---EEEEECCCCCCHHHHHHHHhCC-----Cc--CCCccccceeEEEEcccccccc
Confidence 367777888899999999999999 9999999999999999999952 11 232211 11245666664 456
Q ss_pred chhhHHHHHHhhhcC---------ccccc--ccccccccccccceeeecCCccEEEEecceeecccccCCCCE
Q 006117 119 DYDTLLENIRGLKEG---------KAVQV--PIYDFKSSSRIGYRTLEVPSSRIVIIEGIYALSEKLRPLIDL 180 (660)
Q Consensus 119 d~~tl~e~L~~L~~G---------k~I~~--PiyD~s~~~rs~~~~~~v~~a~VVIVEGilaL~deLr~llDl 180 (660)
+..++.+++.....+ +.+.. ...+...+..++++.+++..++.++.++.+++.||+...+|.
T Consensus 509 ~~ltv~e~l~~~~~~~~~~v~~~L~~lgL~~~~~~~~~~~LSGGqkQRvaLArAL~~~P~lLLLDEPTs~LD~ 581 (986)
T 2iw3_A 509 SDTSVLDFVFESGVGTKEAIKDKLIEFGFTDEMIAMPISALSGGWKMKLALARAVLRNADILLLDEPTNHLDT 581 (986)
T ss_dssp TTSBHHHHHHTTCSSCHHHHHHHHHHTTCCHHHHHSBGGGCCHHHHHHHHHHHHHHTTCSEEEEESTTTTCCH
T ss_pred cCCcHHHHHHHhhcCHHHHHHHHHHHcCCChhhhcCCcccCCHHHHHHHHHHHHHhcCCCEEEEECCccCCCH
Confidence 666777776531000 00111 122334456677888888888999999999999999999997
No 98
>3t61_A Gluconokinase; PSI-biology, structural genomics, protein structure initiati YORK structural genomics research consortium, nysgrc; 2.20A {Sinorhizobium meliloti}
Probab=98.67 E-value=2.6e-08 Score=96.30 Aligned_cols=137 Identities=18% Similarity=0.108 Sum_probs=73.1
Q ss_pred ceEEEEECCCCCcHHHHHHHHHHhCCCceEEEecCccccc----ccccccCCCCCCCchhhHHHHHHhhhcCcccccccc
Q 006117 66 IILVGVAGPSGAGKTVFTEKVLNFMPSIAVITMDNYNDSS----RIIDGNFDDPRLTDYDTLLENIRGLKEGKAVQVPIY 141 (660)
Q Consensus 66 ~~IIGI~GpSGSGKSTLak~L~~lLp~~g~I~lDg~~~~~----~~i~~vfq~p~l~d~~tl~e~L~~L~~Gk~I~~Piy 141 (660)
+.+|+|+|++||||||+++.|++.+ +...+..|.+.... ...+..+++ ......+..+... +
T Consensus 18 ~~~I~l~G~~GsGKSTla~~L~~~l-g~~~i~~d~~~~~~~~~~~~~g~~~~~------~~~~~~~~~l~~~--~----- 83 (202)
T 3t61_A 18 PGSIVVMGVSGSGKSSVGEAIAEAC-GYPFIEGDALHPPENIRKMSEGIPLTD------DDRWPWLAAIGER--L----- 83 (202)
T ss_dssp SSCEEEECSTTSCHHHHHHHHHHHH-TCCEEEGGGGCCHHHHHHHHHTCCCCH------HHHHHHHHHHHHH--H-----
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHh-CCEEEeCCcCcchhhHHHHhcCCCCCc------hhhHHHHHHHHHH--H-----
Confidence 4589999999999999999999987 34466666553211 112222222 1111122111100 0
Q ss_pred cccccccccceeeecCCccEEEEecceeec---ccccCCC---CEEEEEEcChhHHHHHHHHHHHHHhCCCHHHHHHHHH
Q 006117 142 DFKSSSRIGYRTLEVPSSRIVIIEGIYALS---EKLRPLI---DLRVSVTGGVHFDLVKRVFRDIQRVGQEPEEIIHQIS 215 (660)
Q Consensus 142 D~s~~~rs~~~~~~v~~a~VVIVEGilaL~---deLr~ll---DlkIfVdad~dirLiRRI~RDv~eRGrs~E~Vl~qy~ 215 (660)
.....+|+++.+... +.+.... +..||++++.++++.|...|.. ....++++..+.
T Consensus 84 ---------------~~~~~vivd~~~~~~~~~~~l~~~~~~~~~vi~l~~~~e~~~~Rl~~R~~---~~~~~~~~~~~~ 145 (202)
T 3t61_A 84 ---------------ASREPVVVSCSALKRSYRDKLRESAPGGLAFVFLHGSESVLAERMHHRTG---HFMPSSLLQTQL 145 (202)
T ss_dssp ---------------TSSSCCEEECCCCSHHHHHHHHHTSTTCCEEEEEECCHHHHHHHHHHHHS---SCCCHHHHHHHH
T ss_pred ---------------hcCCCEEEECCCCCHHHHHHHHHhcCCCeEEEEEeCCHHHHHHHHHHhhc---cCCCHHHHHHHH
Confidence 112234556554332 1222222 6899999999886655544431 222344444443
Q ss_pred hccccchhhcccCCcCcCcEEEeCCC
Q 006117 216 ETVYPMYKAFIEPDLQTAHIKIINKF 241 (660)
Q Consensus 216 ~~v~P~~~~fIeP~k~~ADiII~N~~ 241 (660)
... -.+....++++|+++.
T Consensus 146 ~~~-------~~~~~~~~~~~Id~~~ 164 (202)
T 3t61_A 146 ETL-------EDPRGEVRTVAVDVAQ 164 (202)
T ss_dssp HHC-------CCCTTSTTEEEEESSS
T ss_pred Hhc-------CCCCCCCCeEEEeCCC
Confidence 332 2334566899998763
No 99
>4eun_A Thermoresistant glucokinase; putative sugar kinase, enzyme function initiative, EFI, STRU genomics, transferase; 1.60A {Janibacter SP}
Probab=98.66 E-value=1.3e-08 Score=98.65 Aligned_cols=61 Identities=20% Similarity=0.089 Sum_probs=39.2
Q ss_pred eccCCcceEEEEECCCCCcHHHHHHHHHHhCCCceEEEecCccccc------ccccccCCCCCCCchhhHHHH
Q 006117 60 AQKNHGIILVGVAGPSGAGKTVFTEKVLNFMPSIAVITMDNYNDSS------RIIDGNFDDPRLTDYDTLLEN 126 (660)
Q Consensus 60 i~~ge~~~IIGI~GpSGSGKSTLak~L~~lLp~~g~I~lDg~~~~~------~~i~~vfq~p~l~d~~tl~e~ 126 (660)
.++|+ +|+|+|+|||||||++++|++.+ |.+.+|+..... ...++.||++..+++....++
T Consensus 26 ~~~g~---~i~l~G~~GsGKSTl~~~L~~~~---g~~~i~~d~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~ 92 (200)
T 4eun_A 26 GEPTR---HVVVMGVSGSGKTTIAHGVADET---GLEFAEADAFHSPENIATMQRGIPLTDEDRWPWLRSLAE 92 (200)
T ss_dssp --CCC---EEEEECCTTSCHHHHHHHHHHHH---CCEEEEGGGGSCHHHHHHHHTTCCCCHHHHHHHHHHHHH
T ss_pred CCCCc---EEEEECCCCCCHHHHHHHHHHhh---CCeEEcccccccHHHHHHHhcCCCCCCcccccHHHHHHH
Confidence 34566 99999999999999999999987 345555433211 234667776554444444443
No 100
>2iw3_A Elongation factor 3A; acetylation, ATP-binding, protein biosynthesis, nucleotide-binding, phosphorylation, RNA- binding, rRNA-binding; HET: ADP; 2.4A {Saccharomyces cerevisiae} PDB: 2iwh_A* 2ix3_A 2ix8_A
Probab=98.60 E-value=2.5e-09 Score=127.25 Aligned_cols=58 Identities=17% Similarity=0.257 Sum_probs=50.5
Q ss_pred cceeeeecCc--eEEEEecceeeccCCcceEEEEECCCCCcHHHHHHHHHHhC-CCceEEEecC
Q 006117 40 EDTLSFEKGF--FIVIRACQLLAQKNHGIILVGVAGPSGAGKTVFTEKVLNFM-PSIAVITMDN 100 (660)
Q Consensus 40 ~~~ls~~~g~--~~vL~~Isl~i~~ge~~~IIGI~GpSGSGKSTLak~L~~lL-p~~g~I~lDg 100 (660)
.+++++.++. ..+|+++||.+..|+ ++||+||||||||||+++|++++ |+.|.|.+++
T Consensus 674 v~nLs~~Y~g~~~~iL~dVSl~I~~Ge---ivaIiGpNGSGKSTLLklLaGll~P~sG~I~~~~ 734 (986)
T 2iw3_A 674 VTNMEFQYPGTSKPQITDINFQCSLSS---RIAVIGPNGAGKSTLINVLTGELLPTSGEVYTHE 734 (986)
T ss_dssp EEEEEECCTTCSSCSEEEEEEEEETTC---EEEECSCCCHHHHHHHHHHTTSSCCSEEEEEECT
T ss_pred EEeeEEEeCCCCceeeeccEEEEcCCC---EEEEECCCCCCHHHHHHHHhCCCCCCceEEEEcC
Confidence 3555666543 568999999999999 99999999999999999999998 7899999874
No 101
>1s96_A Guanylate kinase, GMP kinase; E.coli, dimer, SAD, transferase; 2.00A {Escherichia coli} SCOP: c.37.1.1 PDB: 2an9_A* 2anb_A* 2anc_A 2f3r_A* 2f3t_A*
Probab=98.56 E-value=1.3e-08 Score=101.63 Aligned_cols=162 Identities=16% Similarity=0.161 Sum_probs=84.3
Q ss_pred eeccCCcceEEEEECCCCCcHHHHHHHHHHhCC---CceEEEecCccccc---ccccccCCCCCCCchhhHHHHHHhhhc
Q 006117 59 LAQKNHGIILVGVAGPSGAGKTVFTEKVLNFMP---SIAVITMDNYNDSS---RIIDGNFDDPRLTDYDTLLENIRGLKE 132 (660)
Q Consensus 59 ~i~~ge~~~IIGI~GpSGSGKSTLak~L~~lLp---~~g~I~lDg~~~~~---~~i~~vfq~p~l~d~~tl~e~L~~L~~ 132 (660)
..++|+ +++|+||||||||||+++|++.++ ..|.|.+.+..... ..++|+|+++..|+..+....+ .+
T Consensus 12 ~~~~G~---ii~l~GpsGsGKSTLlk~L~g~~~p~~~~g~v~~ttr~~~~~e~~gi~y~fq~~~~f~~~~~~~~f---~E 85 (219)
T 1s96_A 12 HMAQGT---LYIVSAPSGAGKSSLIQALLKTQPLYDTQVSVSHTTRQPRPGEVHGEHYFFVNHDEFKEMISRDAF---LE 85 (219)
T ss_dssp ---CCC---EEEEECCTTSCHHHHHHHHHHHSCTTTEEECCCEECSCCCTTCCBTTTBEECCHHHHHHHHHTTCE---EE
T ss_pred cCCCCc---EEEEECCCCCCHHHHHHHHhccCCCCceEEEEEecCCCCCcccccCceEEECCHHHHHHHHhcCHH---HH
Confidence 457788 999999999999999999999984 35667766643221 3477888877655543331000 00
Q ss_pred CcccccccccccccccccceeeecCCccEEEEecceeecccccCCC--CEEEEEEcChhHHHHHHHHHHHHHhCC-CHHH
Q 006117 133 GKAVQVPIYDFKSSSRIGYRTLEVPSSRIVIIEGIYALSEKLRPLI--DLRVSVTGGVHFDLVKRVFRDIQRVGQ-EPEE 209 (660)
Q Consensus 133 Gk~I~~PiyD~s~~~rs~~~~~~v~~a~VVIVEGilaL~deLr~ll--DlkIfVdad~dirLiRRI~RDv~eRGr-s~E~ 209 (660)
.-......|... ...+ ...+...+++|+|.-......+.+.+ ...||+.++.-..+.+|+ ..||. ++++
T Consensus 86 ~~~~~~~~yg~~-~~~v---~~~l~~G~illLDLD~~~~~~i~~~l~~~~tI~i~th~~~~l~~Rl----~~rG~~~~e~ 157 (219)
T 1s96_A 86 HAEVFGNYYGTS-REAI---EQVLATGVDVFLDIDWQGAQQIRQKMPHARSIFILPPSKIELDRRL----RGRGQDSEEV 157 (219)
T ss_dssp EEEETTEEEEEE-HHHH---HHHHTTTCEEEEECCHHHHHHHHHHCTTCEEEEEECSSHHHHHHHH----HTTSCSCHHH
T ss_pred HHHHHhccCCCC-HHHH---HHHHhcCCeEEEEECHHHHHHHHHHccCCEEEEEECCCHHHHHHHH----HHcCCCCHHH
Confidence 000000011100 0000 01123357888881111111222222 367888876544454544 45664 6677
Q ss_pred HHHHHHhccccchhhcccCCcCcCcEEEeCC
Q 006117 210 IIHQISETVYPMYKAFIEPDLQTAHIKIINK 240 (660)
Q Consensus 210 Vl~qy~~~v~P~~~~fIeP~k~~ADiII~N~ 240 (660)
+..++..... . + +.....|.+|.|+
T Consensus 158 i~~rl~~a~~-e----~-~~~~~~d~~i~Nd 182 (219)
T 1s96_A 158 IAKRMAQAVA-E----M-SHYAEYDYLIVND 182 (219)
T ss_dssp HHHHHHHHHH-H----H-TTGGGSSEEEECS
T ss_pred HHHHHHHHHH-H----H-hhccCCCEEEECc
Confidence 7666643211 1 1 1234568888874
No 102
>3vaa_A Shikimate kinase, SK; structural genomics, center for structural genomics of infec diseases, csgid, metal binding, transferase; 1.70A {Bacteroides thetaiotaomicron}
Probab=98.54 E-value=7.1e-09 Score=100.51 Aligned_cols=50 Identities=20% Similarity=0.252 Sum_probs=30.6
Q ss_pred CceEEEEecceeeccCCcceEEEEECCCCCcHHHHHHHHHHhCCCceEEEecCc
Q 006117 48 GFFIVIRACQLLAQKNHGIILVGVAGPSGAGKTVFTEKVLNFMPSIAVITMDNY 101 (660)
Q Consensus 48 g~~~vL~~Isl~i~~ge~~~IIGI~GpSGSGKSTLak~L~~lLp~~g~I~lDg~ 101 (660)
+...++++++|.+.++. +|+|+|++||||||+++.|++.+ +...+..|.+
T Consensus 10 ~~~~~~~~~~~~~~~~~---~i~l~G~~GsGKsTl~~~La~~l-~~~~i~~d~~ 59 (199)
T 3vaa_A 10 GVDLGTENLYFQSNAMV---RIFLTGYMGAGKTTLGKAFARKL-NVPFIDLDWY 59 (199)
T ss_dssp --------------CCC---EEEEECCTTSCHHHHHHHHHHHH-TCCEEEHHHH
T ss_pred CCCCCCCceeEecCCCC---EEEEEcCCCCCHHHHHHHHHHHc-CCCEEcchHH
Confidence 44568999999999888 99999999999999999999987 3446666654
No 103
>2gfg_A BH2851; antiparallel barrel, structural genomics, joint center for S genomics, JCSG, protein structure initiative, PSI-2, unknow function; 2.12A {Bacillus halodurans}
Probab=98.53 E-value=1.7e-06 Score=84.72 Aligned_cols=125 Identities=11% Similarity=0.095 Sum_probs=98.9
Q ss_pred eeeeeecCCCCCcccccceEEEeecCCeEEEEEeeeecCCCceeeeeEEEEeeh---------------hhHHHHhhcCC
Q 006117 280 TYDIYLLPPGEDPDACQSYLRMRNRDGKYNLMFEEWVTDSPFIISPRITFEVSV---------------RLLGGLMALGY 344 (660)
Q Consensus 280 ~~DIYl~pP~~d~~~tde~LRvR~~dg~~~Ltykg~~~d~~fi~rp~~efeV~v---------------~~~~gL~~LGy 344 (660)
..++||..|..+++..+.+||+|..|+.+.+|+|+|... .|++.+.+|+. .+.+.|.++|+
T Consensus 36 ~~n~YfDTpd~~L~~~~~aLRiR~~~~~~~~TlK~~~~~----gR~E~e~~l~~~~~~~~l~~~~~p~~~~~~~l~~~~~ 111 (193)
T 2gfg_A 36 QRNHYFETDDFQLKKQSSALRIREKEAIFTFTLKQPHPA----GLLETNQTLSKQEAKLALESAHFPSGEVMDALRDLSI 111 (193)
T ss_dssp EEEEEEECTTCHHHHTTCEEEEEEETTEEEEEEEEECSS----SEEEEEEEECHHHHHHHHHHCCCCCSHHHHHHHHTTC
T ss_pred eEEEeeeCCCHHHHhCCCEEEEEeeCCcEEEEEccCCCC----CCceEeccCCchhhhhhcccccCCcHHHHHHHHHhcC
Confidence 558999999999999999999999999999999999774 38888888872 34556677776
Q ss_pred e-----EEEEEEEeeeEeecCcEEEEeecccccCcceEEEE--ec----cHHHHHHHHHHcCCCCCccchhhHHHH
Q 006117 345 T-----IATILKRSSHIFYDDRVCVKTDWLEQLNRKYVQVQ--GR----DRLYVKYVGEQLGLDGSYVPRTYIEQI 409 (660)
Q Consensus 345 ~-----~aa~V~R~re~y~~g~~~i~lD~ve~Lg~~FveI~--g~----~~~~v~~~~~~Lgl~G~~i~kSYLEli 409 (660)
. +.+.+.+.|..|..++-.|++|.++.+|.++.||+ -. ..+.+.+++.++|+...+- .|=++-.
T Consensus 112 ~~~~L~~~~~~~~~R~~~~~~~gev~lD~~~~~~~~~~ElE~El~~~~~~~~~~~~~l~~~gi~~~~~-~SK~~R~ 186 (193)
T 2gfg_A 112 PISQLKHIGTLSTSRAEISYEQGILCLDHSSYLGIEDYEIEFEGTSEEHATVTFQEILKTFSISQVPT-ENKIQRF 186 (193)
T ss_dssp CGGGCEEEEEEEEEEEEEEETTEEEEEEEEEETTEEEEEEEEEESSHHHHHHHHHHHHHHTTCCCCCC-CCHHHHH
T ss_pred CccceEEEEEEEEEEEEEEeCCcEEEEeccEecCCeeEEEEEEECCcHHHHHHHHHHHHHCCCCcCCC-cCHHHHH
Confidence 5 47889999988888877999999999996677774 22 2356788889999975433 5555443
No 104
>3v85_A CYTH-like phosphatase; CYTH domain, hydrolase; HET: CIT; 1.90A {Arabidopsis thaliana}
Probab=98.51 E-value=8.2e-07 Score=87.79 Aligned_cols=124 Identities=11% Similarity=0.004 Sum_probs=95.6
Q ss_pred ccceeeeeecCCCCCcccccceEEEeecCC-----------eEEEEEeeeecCCCc-eeeeeEEEEeehhhH--------
Q 006117 277 TEETYDIYLLPPGEDPDACQSYLRMRNRDG-----------KYNLMFEEWVTDSPF-IISPRITFEVSVRLL-------- 336 (660)
Q Consensus 277 ~~~~~DIYl~pP~~d~~~tde~LRvR~~dg-----------~~~Ltykg~~~d~~f-i~rp~~efeV~v~~~-------- 336 (660)
...+.|+||..|..++...+.|||+|..++ ++.+|||+|...... ..+++.+.++.....
T Consensus 29 ~~~~~~~y~dt~~~~l~~~~~~lr~R~~~~~~e~~~~~~~~~~~~TlK~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~ 108 (210)
T 3v85_A 29 TLHQRNTFFDTPKNDLSLRRAVLRLRFLQNAAVSAASPSPPRCIVSLKAKPTLANGISRVEEDEEEIEYWIGKECVESPA 108 (210)
T ss_dssp EEEEEEEEEECTTCHHHHTTEEEEEEEEEC------CCCCCEEEEEEEEEEEEETTEEEEEEEEEEECHHHHHHHHHCGG
T ss_pred eEEEEEEEEeCCCHHHHhCCcEEEEEEeCCccceeccCCCcceEEEEecCCcCCCCceeEEEEeecCChhHHHHhhhhhh
Confidence 334559999999999999999999998655 567999999887765 445565555542211
Q ss_pred -----------------HHHhhcCCeEEEEEEEeeeEeecCcEEEEeecccccCcceEEEEec------cHHHHHHHHHH
Q 006117 337 -----------------GGLMALGYTIATILKRSSHIFYDDRVCVKTDWLEQLNRKYVQVQGR------DRLYVKYVGEQ 393 (660)
Q Consensus 337 -----------------~gL~~LGy~~aa~V~R~re~y~~g~~~i~lD~ve~Lg~~FveI~g~------~~~~v~~~~~~ 393 (660)
+.+..+|+++.+.+.+.|..|..++..|++|..+..+-+|+||+-. ..+.+.++.++
T Consensus 109 ~~~~~~~~~i~~~~~~~~i~~~~~l~~~~~~~t~R~e~~~~~~~l~LD~~~~~~g~~~ELEle~~d~e~~~~~~~~lL~~ 188 (210)
T 3v85_A 109 KLSDIGSRVLKRVKEEYGFNDFLGFVCLGGFENVRNVYEWRGVKLEVDETKYDFGNCYEIECETEEPERVKTMIEEFLTE 188 (210)
T ss_dssp GGGGCCCHHHHHHHHHHTCSCSTTCEEEEEEEEEEEEEEETTEEEEEEEEEETTEEEEEEEEECSCHHHHHHHHHHHHHH
T ss_pred ccccCChHHHHHHHHhhccccccceEEEEEEEEEEEEEEeCCEEEEEeeeeeCCcEEEEEEEEeCCHHHHHHHHHHHHHH
Confidence 1124689999999999999999999999999999664389888533 46678888899
Q ss_pred cCCCCCc
Q 006117 394 LGLDGSY 400 (660)
Q Consensus 394 Lgl~G~~ 400 (660)
+||.-.+
T Consensus 189 ~gI~~~~ 195 (210)
T 3v85_A 189 EKIEFSN 195 (210)
T ss_dssp TTCCEEE
T ss_pred cCCCcCc
Confidence 9997433
No 105
>3j16_B RLI1P; ribosome recycling, translation, eukarya, ribosome; HET: ATP; 7.20A {Saccharomyces cerevisiae}
Probab=98.49 E-value=2.2e-08 Score=114.24 Aligned_cols=163 Identities=8% Similarity=0.032 Sum_probs=95.4
Q ss_pred ceeeeecc----ceeeeecCce-EEEEecceeeccCCcceEEEEECCCCCcHHHHHHHHHHhC-CCceEEE---------
Q 006117 33 RYEIVPIE----DTLSFEKGFF-IVIRACQLLAQKNHGIILVGVAGPSGAGKTVFTEKVLNFM-PSIAVIT--------- 97 (660)
Q Consensus 33 ~~ei~~~~----~~ls~~~g~~-~vL~~Isl~i~~ge~~~IIGI~GpSGSGKSTLak~L~~lL-p~~g~I~--------- 97 (660)
.+.++.++ +++++.++.. ..++.+. .+++|+ ++||+||||||||||+++|++++ |+.|.|.
T Consensus 69 ~i~i~nl~~~~~~~~~~~Y~~~~~~l~~l~-~~~~Ge---i~~LvGpNGaGKSTLLkiL~Gll~P~~G~i~~~~~~~~~~ 144 (608)
T 3j16_B 69 AIQIINLPTNLEAHVTHRYSANSFKLHRLP-TPRPGQ---VLGLVGTNGIGKSTALKILAGKQKPNLGRFDDPPEWQEII 144 (608)
T ss_dssp CEEEEEESSSSSTTEEEECSTTSCEEECCC-CCCTTS---EEEEECCTTSSHHHHHHHHHTSSCCCTTTTCCSSCHHHHH
T ss_pred ceEEecCChhhcCCeEEEECCCceeecCCC-CCCCCC---EEEEECCCCChHHHHHHHHhcCCCCCCceEecccchhhhh
Confidence 34555555 3456666543 3566666 578899 99999999999999999999998 7778762
Q ss_pred --ecCccccc-------cccc--ccCCCCCCC------chhhHHHHHHh-----------hhcCcccccccccccccccc
Q 006117 98 --MDNYNDSS-------RIID--GNFDDPRLT------DYDTLLENIRG-----------LKEGKAVQVPIYDFKSSSRI 149 (660)
Q Consensus 98 --lDg~~~~~-------~~i~--~vfq~p~l~------d~~tl~e~L~~-----------L~~Gk~I~~PiyD~s~~~rs 149 (660)
+.|..... .... +.++....+ ...++.+.+.. +.+.-.+ ....+...+..+
T Consensus 145 ~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~l~~~~~~~~~~~~~~l~~~gl-~~~~~~~~~~LS 223 (608)
T 3j16_B 145 KYFRGSELQNYFTKMLEDDIKAIIKPQYVDNIPRAIKGPVQKVGELLKLRMEKSPEDVKRYIKILQL-ENVLKRDIEKLS 223 (608)
T ss_dssp HHTTTSTHHHHHHHHHHTSCCCEEECCCTTTHHHHCSSSSSHHHHHHHHHCCSCHHHHHHHHHHHTC-TGGGGSCTTTCC
T ss_pred heecChhhhhhhhHHHHHhhhhhhchhhhhhhhhhhcchhhHHHHHHhhhhhhHHHHHHHHHHHcCC-cchhCCChHHCC
Confidence 12211000 0000 011111000 00122222211 1000001 122345556677
Q ss_pred cceeeecCCccEEEEecceeecccccCCCCEEEEEEcChhHHHHHHHHHHHHHhCCCH
Q 006117 150 GYRTLEVPSSRIVIIEGIYALSEKLRPLIDLRVSVTGGVHFDLVKRVFRDIQRVGQEP 207 (660)
Q Consensus 150 ~~~~~~v~~a~VVIVEGilaL~deLr~llDlkIfVdad~dirLiRRI~RDv~eRGrs~ 207 (660)
+++.+++..+++++.++.+++.||+...+|. .....+.++.+.+.+.|.+.
T Consensus 224 gGe~Qrv~iAraL~~~p~llllDEPts~LD~-------~~~~~l~~~l~~l~~~g~tv 274 (608)
T 3j16_B 224 GGELQRFAIGMSCVQEADVYMFDEPSSYLDV-------KQRLNAAQIIRSLLAPTKYV 274 (608)
T ss_dssp HHHHHHHHHHHHHHSCCSEEEEECTTTTCCH-------HHHHHHHHHHHGGGTTTCEE
T ss_pred HHHHHHHHHHHHHHhCCCEEEEECcccCCCH-------HHHHHHHHHHHHHHhCCCEE
Confidence 7788888888999999999999999999997 34444455555555455543
No 106
>3sop_A Neuronal-specific septin-3; hydrolase; HET: GDP; 2.88A {Homo sapiens}
Probab=98.46 E-value=1.8e-08 Score=103.62 Aligned_cols=110 Identities=13% Similarity=0.073 Sum_probs=54.3
Q ss_pred eEEEEECCCCCcHHHHHHHHHHhC-CCceEEEecCcccc----cccccccCCCCCCCchhhHHHHHHhhhc--Ccccccc
Q 006117 67 ILVGVAGPSGAGKTVFTEKVLNFM-PSIAVITMDNYNDS----SRIIDGNFDDPRLTDYDTLLENIRGLKE--GKAVQVP 139 (660)
Q Consensus 67 ~IIGI~GpSGSGKSTLak~L~~lL-p~~g~I~lDg~~~~----~~~i~~vfq~p~l~d~~tl~e~L~~L~~--Gk~I~~P 139 (660)
+.+||+|+||||||||+++|++.. |..|.|.++|.... .+.+++++|++.++...++.+++..... +.....+
T Consensus 3 f~v~lvG~nGaGKSTLln~L~g~~~~~~G~i~~~g~~i~~~~~~~~i~~v~q~~~~~~~ltv~d~~~~g~~~~~~~~~~~ 82 (270)
T 3sop_A 3 FNIMVVGQSGLGKSTLVNTLFKSQVSRKASSWNREEKIPKTVEIKAIGHVIEEGGVKMKLTVIDTPGFGDQINNENCWEP 82 (270)
T ss_dssp EEEEEEESSSSSHHHHHHHHHHHHC------------CCCCCSCCEEEESCC----CCEEEEECCCC--CCSBCTTCSHH
T ss_pred eEEEEECCCCCCHHHHHHHHhCCCCCCCCccccCCcccCcceeeeeeEEEeecCCCcCCceEEechhhhhhcccHHHHHH
Confidence 579999999999999999999997 78899998886432 2457788888777666565554432111 0000000
Q ss_pred --------cccccccccccceeeecCCccEEEEecceeecccccCCCC
Q 006117 140 --------IYDFKSSSRIGYRTLEVPSSRIVIIEGIYALSEKLRPLID 179 (660)
Q Consensus 140 --------iyD~s~~~rs~~~~~~v~~a~VVIVEGilaL~deLr~llD 179 (660)
..+......++++.+++..+++.+. +++.+++...+|
T Consensus 83 i~~~~~~~~~~~~~~~LS~G~~qrv~iaRal~~---lllldep~~gL~ 127 (270)
T 3sop_A 83 IEKYINEQYEKFLKEEVNIARKKRIPDTRVHCC---LYFISPTGHSLR 127 (270)
T ss_dssp HHHHHHHHHHHHHHHHSCTTCCSSCCCCSCCEE---EEEECCCSSSCC
T ss_pred HHHHHHHHHHhhhHHhcCcccchhhhhheeeee---eEEEecCCCcCC
Confidence 0111122334555566666666553 444466655555
No 107
>1knq_A Gluconate kinase; ALFA/beta structure, transferase; 2.00A {Escherichia coli} SCOP: c.37.1.17 PDB: 1ko1_A 1ko4_A 1ko5_A* 1ko8_A* 1kof_A*
Probab=98.45 E-value=2.8e-07 Score=86.75 Aligned_cols=33 Identities=24% Similarity=0.320 Sum_probs=26.1
Q ss_pred eEEEEECCCCCcHHHHHHHHHHhCCCceEEEecC
Q 006117 67 ILVGVAGPSGAGKTVFTEKVLNFMPSIAVITMDN 100 (660)
Q Consensus 67 ~IIGI~GpSGSGKSTLak~L~~lLp~~g~I~lDg 100 (660)
.+|+|+|++||||||+++.|++.+ +...+..|.
T Consensus 9 ~~i~l~G~~GsGKSTl~~~l~~~~-g~~~i~~d~ 41 (175)
T 1knq_A 9 HIYVLMGVSGSGKSAVASEVAHQL-HAAFLDGDF 41 (175)
T ss_dssp EEEEEECSTTSCHHHHHHHHHHHH-TCEEEEGGG
T ss_pred cEEEEEcCCCCCHHHHHHHHHHhh-CcEEEeCcc
Confidence 499999999999999999999976 333444443
No 108
>1tev_A UMP-CMP kinase; ploop, NMP binding region, LID region, conformational changes, transferase; 2.10A {Homo sapiens} SCOP: c.37.1.1
Probab=98.42 E-value=7.3e-08 Score=91.18 Aligned_cols=125 Identities=14% Similarity=0.103 Sum_probs=63.7
Q ss_pred ceEEEEECCCCCcHHHHHHHHHHhCCCceEEEecCcccccccccccCCCCCCCchhhHHHHHHhhhcCcccccccccccc
Q 006117 66 IILVGVAGPSGAGKTVFTEKVLNFMPSIAVITMDNYNDSSRIIDGNFDDPRLTDYDTLLENIRGLKEGKAVQVPIYDFKS 145 (660)
Q Consensus 66 ~~IIGI~GpSGSGKSTLak~L~~lLp~~g~I~lDg~~~~~~~i~~vfq~p~l~d~~tl~e~L~~L~~Gk~I~~PiyD~s~ 145 (660)
+.+|+|.|++||||||+++.|+..+ +...|+.|........ .. .......+.+.+. .|.....+......
T Consensus 3 ~~~I~l~G~~GsGKsT~a~~L~~~~-~~~~i~~d~~~~~~~~----~~--~~~~~~~~~~~~~---~g~~~~~~~~~~~l 72 (196)
T 1tev_A 3 PLVVFVLGGPGAGKGTQCARIVEKY-GYTHLSAGELLRDERK----NP--DSQYGELIEKYIK---EGKIVPVEITISLL 72 (196)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHHHH-CCEEEEHHHHHHHHHH----CT--TSTTHHHHHHHHH---TTCCCCHHHHHHHH
T ss_pred ceEEEEECCCCCCHHHHHHHHHHHh-CCeEEeHHHHHHHHHh----cc--CChHHHHHHHHHH---CCCcCCHHHHHHHH
Confidence 5689999999999999999999876 3446666654211100 00 0000111222111 22111100000000
Q ss_pred cccccceeeecCCccEEEEecceeecc---cc----c--CCCCEEEEEEcChhHHHHHHHHHHH
Q 006117 146 SSRIGYRTLEVPSSRIVIIEGIYALSE---KL----R--PLIDLRVSVTGGVHFDLVKRVFRDI 200 (660)
Q Consensus 146 ~~rs~~~~~~v~~a~VVIVEGilaL~d---eL----r--~llDlkIfVdad~dirLiRRI~RDv 200 (660)
................+|+||...... .+ . ...|..||+++|.++++.|...|+.
T Consensus 73 ~~~~~~~~~~~~~~~~vi~dg~~~~~~~~~~~~~~~~~~~~~~~~i~l~~~~e~~~~R~~~R~~ 136 (196)
T 1tev_A 73 KREMDQTMAANAQKNKFLIDGFPRNQDNLQGWNKTMDGKADVSFVLFFDCNNEICIERCLERGK 136 (196)
T ss_dssp HHHHHHHHHHCTTCCEEEEESCCCSHHHHHHHHHHHTTTCEEEEEEEEECCHHHHHHHHHHHHH
T ss_pred HHHHHhhhccccCCCeEEEeCCCCCHHHHHHHHHHhcccCCCCEEEEEECCHHHHHHHHHcccc
Confidence 000000000112346788898765422 11 1 1467899999999998777766654
No 109
>3ux8_A Excinuclease ABC, A subunit; UVRA, nucleotide excision repair, DNA repair, ABC ATPase, DN binding protein; HET: ADP; 2.10A {Geobacillus}
Probab=98.42 E-value=2.8e-08 Score=114.03 Aligned_cols=59 Identities=7% Similarity=0.010 Sum_probs=42.6
Q ss_pred cccccccccceeeecCCccEEEEec---ceeecccccCCCCEEEEEEcChhHHHHHHHHHHHHHhCCCH
Q 006117 142 DFKSSSRIGYRTLEVPSSRIVIIEG---IYALSEKLRPLIDLRVSVTGGVHFDLVKRVFRDIQRVGQEP 207 (660)
Q Consensus 142 D~s~~~rs~~~~~~v~~a~VVIVEG---ilaL~deLr~llDlkIfVdad~dirLiRRI~RDv~eRGrs~ 207 (660)
+...+..++++.+++..++.++.++ .+++.||+...+|. .....+..+.+++.+.|.+.
T Consensus 538 ~~~~~~LSgG~~qrv~iAraL~~~p~~p~llllDEPt~~LD~-------~~~~~i~~~l~~l~~~g~tv 599 (670)
T 3ux8_A 538 GQPATTLSGGEAQRVKLAAELHRRSNGRTLYILDEPTTGLHV-------DDIARLLDVLHRLVDNGDTV 599 (670)
T ss_dssp TCCGGGCCHHHHHHHHHHHHHHSCCCSCEEEEEESTTTTCCH-------HHHHHHHHHHHHHHHTTCEE
T ss_pred cCCchhCCHHHHHHHHHHHHHhhCCCCCcEEEEeCCCCCCCH-------HHHHHHHHHHHHHHHCCCEE
Confidence 4445567778888888888887775 37788999999997 45555666666666567654
No 110
>2qor_A Guanylate kinase; phosphotransferase, purine metabolism, structural genomics, structural genomics of pathogenic protozoa consortium; HET: 5GP POP; 1.80A {Plasmodium vivax}
Probab=98.41 E-value=3.3e-07 Score=89.01 Aligned_cols=24 Identities=46% Similarity=0.713 Sum_probs=22.8
Q ss_pred EEEEECCCCCcHHHHHHHHHHhCC
Q 006117 68 LVGVAGPSGAGKTVFTEKVLNFMP 91 (660)
Q Consensus 68 IIGI~GpSGSGKSTLak~L~~lLp 91 (660)
+|+|+|||||||||+++.|+..++
T Consensus 14 ~i~l~G~sGsGKsTl~~~L~~~~~ 37 (204)
T 2qor_A 14 PLVVCGPSGVGKGTLIKKVLSEFP 37 (204)
T ss_dssp CEEEECCTTSCHHHHHHHHHHHCT
T ss_pred EEEEECCCCCCHHHHHHHHHHhCc
Confidence 999999999999999999999885
No 111
>4gp7_A Metallophosphoesterase; polynucleotide kinase phosphatase, RNA repair, transferase; HET: ATP CIT; 2.00A {Clostridium thermocellum} PDB: 4gp6_A*
Probab=98.41 E-value=1.5e-08 Score=96.41 Aligned_cols=110 Identities=18% Similarity=0.140 Sum_probs=60.3
Q ss_pred ecceeeccCCcceEEEEECCCCCcHHHHHHHHHHhCCCceEEEecCcccccccccccCCCCCCC-chhhHHHHHHh----
Q 006117 55 ACQLLAQKNHGIILVGVAGPSGAGKTVFTEKVLNFMPSIAVITMDNYNDSSRIIDGNFDDPRLT-DYDTLLENIRG---- 129 (660)
Q Consensus 55 ~Isl~i~~ge~~~IIGI~GpSGSGKSTLak~L~~lLp~~g~I~lDg~~~~~~~i~~vfq~p~l~-d~~tl~e~L~~---- 129 (660)
++||.+++|+ +++|+||||||||||++++.. +...+..|. ..+++++++... ......+.+..
T Consensus 1 ~vsl~i~~ge---i~~l~G~nGsGKSTl~~~~~~---~~~~~~~d~------~~g~~~~~~~~~~~~~~~~~~~~~~~~~ 68 (171)
T 4gp7_A 1 SMKLTIPELS---LVVLIGSSGSGKSTFAKKHFK---PTEVISSDF------CRGLMSDDENDQTVTGAAFDVLHYIVSK 68 (171)
T ss_dssp CEEEEEESSE---EEEEECCTTSCHHHHHHHHSC---GGGEEEHHH------HHHHHCSSTTCGGGHHHHHHHHHHHHHH
T ss_pred CccccCCCCE---EEEEECCCCCCHHHHHHHHcc---CCeEEccHH------HHHHhcCcccchhhHHHHHHHHHHHHHH
Confidence 5789999999 999999999999999997432 222333221 124555554321 11222222211
Q ss_pred -hhcCcccccccccccccccccceeeecCCccEEEEecceeecccccCCCCE
Q 006117 130 -LKEGKAVQVPIYDFKSSSRIGYRTLEVPSSRIVIIEGIYALSEKLRPLIDL 180 (660)
Q Consensus 130 -L~~Gk~I~~PiyD~s~~~rs~~~~~~v~~a~VVIVEGilaL~deLr~llDl 180 (660)
+..|... ..+. ....++++.+.+..++.+..+..+++.||+...+|.
T Consensus 69 ~~~~g~~~---~~~~-~~~~s~g~~qrv~iAral~~~p~~lllDEPt~~Ld~ 116 (171)
T 4gp7_A 69 RLQLGKLT---VVDA-TNVQESARKPLIEMAKDYHCFPVAVVFNLPEKVCQE 116 (171)
T ss_dssp HHHTTCCE---EEES-CCCSHHHHHHHHHHHHHTTCEEEEEEECCCHHHHHH
T ss_pred HHhCCCeE---EEEC-CCCCHHHHHHHHHHHHHcCCcEEEEEEeCCHHHHHH
Confidence 1222211 1111 112233344455556666677777777777666664
No 112
>3ozx_A RNAse L inhibitor; ATP binding cassette protein, hydrolase, translation; HET: ADP; 2.05A {Sulfolobus solfataricus}
Probab=98.40 E-value=2.5e-08 Score=112.15 Aligned_cols=135 Identities=13% Similarity=0.145 Sum_probs=81.9
Q ss_pred eccCCcceEEEEECCCCCcHHHHHHHHHHhC-CCceEE-----------EecCcccc---------cc----cccccCCC
Q 006117 60 AQKNHGIILVGVAGPSGAGKTVFTEKVLNFM-PSIAVI-----------TMDNYNDS---------SR----IIDGNFDD 114 (660)
Q Consensus 60 i~~ge~~~IIGI~GpSGSGKSTLak~L~~lL-p~~g~I-----------~lDg~~~~---------~~----~i~~vfq~ 114 (660)
.++|+ ++||+||||||||||+++|++++ |+.|.| .+++.... .. ...++.+.
T Consensus 22 ~~~Ge---i~gLiGpNGaGKSTLlkiL~Gl~~p~~G~i~~~~~~~~~~~~~~g~~i~~~~~~~~~~~~~~~~~~~~~~~~ 98 (538)
T 3ozx_A 22 PKNNT---ILGVLGKNGVGKTTVLKILAGEIIPNFGDPNSKVGKDEVLKRFRGKEIYNYFKELYSNELKIVHKIQYVEYA 98 (538)
T ss_dssp CCTTE---EEEEECCTTSSHHHHHHHHTTSSCCCTTCTTSCCCHHHHHHHHTTSTTHHHHHHHHTTCCCEEEECSCTTGG
T ss_pred CCCCC---EEEEECCCCCcHHHHHHHHhcCCCCCCCccccccchhhHHhhcCCeeHHHHHHHHhhcccchhhccchhhhh
Confidence 35677 99999999999999999999998 888876 33332211 00 11122222
Q ss_pred CCCCchhhHHHHHHhhhcCcc-------cc-cccccccccccccceeeecCCccEEEEecceeecccccCCCCEEEEEEc
Q 006117 115 PRLTDYDTLLENIRGLKEGKA-------VQ-VPIYDFKSSSRIGYRTLEVPSSRIVIIEGIYALSEKLRPLIDLRVSVTG 186 (660)
Q Consensus 115 p~l~d~~tl~e~L~~L~~Gk~-------I~-~PiyD~s~~~rs~~~~~~v~~a~VVIVEGilaL~deLr~llDlkIfVda 186 (660)
+.++. .++.+.+........ +. ....+...+..++++.+++..+++++.++.+++.||+...+|.
T Consensus 99 ~~~~~-~~v~~~l~~~~~~~~~~~~l~~l~l~~~~~~~~~~LSgGe~Qrv~iA~aL~~~p~illlDEPts~LD~------ 171 (538)
T 3ozx_A 99 SKFLK-GTVNEILTKIDERGKKDEVKELLNMTNLWNKDANILSGGGLQRLLVAASLLREADVYIFDQPSSYLDV------ 171 (538)
T ss_dssp GTTCC-SBHHHHHHHHCCSSCHHHHHHHTTCGGGTTSBGGGCCHHHHHHHHHHHHHHSCCSEEEEESTTTTCCH------
T ss_pred hhhcc-CcHHHHhhcchhHHHHHHHHHHcCCchhhcCChhhCCHHHHHHHHHHHHHHcCCCEEEEECCcccCCH------
Confidence 22221 134443322111100 00 1223455566777888888889999999999999999999997
Q ss_pred ChhHHHHHHHHHHHHHhCCC
Q 006117 187 GVHFDLVKRVFRDIQRVGQE 206 (660)
Q Consensus 187 d~dirLiRRI~RDv~eRGrs 206 (660)
.....+.++.+.+.+ |.+
T Consensus 172 -~~~~~l~~~l~~l~~-g~t 189 (538)
T 3ozx_A 172 -RERMNMAKAIRELLK-NKY 189 (538)
T ss_dssp -HHHHHHHHHHHHHCT-TSE
T ss_pred -HHHHHHHHHHHHHhC-CCE
Confidence 333444455555533 544
No 113
>3nwj_A ATSK2; P loop, shikimate, nucleoside monophosphate kinase, shikimat ATP binding, chloroplast, transferase; 2.35A {Arabidopsis thaliana}
Probab=98.38 E-value=2.6e-08 Score=101.58 Aligned_cols=53 Identities=11% Similarity=0.067 Sum_probs=40.0
Q ss_pred eeec-CceEEEEecceeecc---CCcceEEEEECCCCCcHHHHHHHHHHhCCCceEEEecC
Q 006117 44 SFEK-GFFIVIRACQLLAQK---NHGIILVGVAGPSGAGKTVFTEKVLNFMPSIAVITMDN 100 (660)
Q Consensus 44 s~~~-g~~~vL~~Isl~i~~---ge~~~IIGI~GpSGSGKSTLak~L~~lLp~~g~I~lDg 100 (660)
++.+ +...+|++++|.+.+ |+ +|+|+|++||||||+++.|++.+ +...+..|.
T Consensus 25 ~~~~~~~~~~l~~~~~~i~~~l~g~---~i~l~G~~GsGKSTl~~~La~~l-g~~~~d~d~ 81 (250)
T 3nwj_A 25 HSPFDEEQQILKKKAEEVKPYLNGR---SMYLVGMMGSGKTTVGKIMARSL-GYTFFDCDT 81 (250)
T ss_dssp -------CHHHHHHHHTTHHHHTTC---CEEEECSTTSCHHHHHHHHHHHH-TCEEEEHHH
T ss_pred eEEecCcchhhhhhhhhhhhhcCCC---EEEEECCCCCCHHHHHHHHHHhc-CCcEEeCcH
Confidence 4444 556789999999999 88 99999999999999999999987 333455444
No 114
>1kgd_A CASK, peripheral plasma membrane CASK; maguk, guanylate kinase like domain, protein binding; 1.31A {Homo sapiens} SCOP: c.37.1.1
Probab=98.36 E-value=2.4e-07 Score=88.52 Aligned_cols=24 Identities=17% Similarity=0.397 Sum_probs=22.9
Q ss_pred EEEEECCCCCcHHHHHHHHHHhCC
Q 006117 68 LVGVAGPSGAGKTVFTEKVLNFMP 91 (660)
Q Consensus 68 IIGI~GpSGSGKSTLak~L~~lLp 91 (660)
+++|+||||||||||+++|.+.++
T Consensus 7 ~i~i~GpsGsGKSTL~~~L~~~~~ 30 (180)
T 1kgd_A 7 TLVLLGAHGVGRRHIKNTLITKHP 30 (180)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHCT
T ss_pred EEEEECCCCCCHHHHHHHHHhhCC
Confidence 999999999999999999999884
No 115
>2v9p_A Replication protein E1; AAA+ molecular motor, DNA replication, DNA translocation, nucleotide-binding, DNA-binding; 3.00A {Bovine papillomavirus type 1} PDB: 2gxa_A*
Probab=98.35 E-value=7.3e-08 Score=101.24 Aligned_cols=52 Identities=12% Similarity=0.248 Sum_probs=44.2
Q ss_pred ceeeeecCceEEEEecceeeccCCcceEEEEECCCCCcHHHHHHHHHHhCCCceEEEe
Q 006117 41 DTLSFEKGFFIVIRACQLLAQKNHGIILVGVAGPSGAGKTVFTEKVLNFMPSIAVITM 98 (660)
Q Consensus 41 ~~ls~~~g~~~vL~~Isl~i~~ge~~~IIGI~GpSGSGKSTLak~L~~lLp~~g~I~l 98 (660)
+++++.++ ..+|++++|.+++|+ +++|+||||||||||+++|++++ .|.|..
T Consensus 105 ~~vs~~y~-~~vL~~vsl~i~~Ge---~vaIvGpsGsGKSTLl~lL~gl~--~G~I~~ 156 (305)
T 2v9p_A 105 QNIELITF-INALKLWLKGIPKKN---CLAFIGPPNTGKSMLCNSLIHFL--GGSVLS 156 (305)
T ss_dssp TTCCHHHH-HHHHHHHHHTCTTCS---EEEEECSSSSSHHHHHHHHHHHH--TCEEEC
T ss_pred EEEEEEcC-hhhhccceEEecCCC---EEEEECCCCCcHHHHHHHHhhhc--CceEEE
Confidence 44555554 468999999999999 99999999999999999999998 677754
No 116
>3b9q_A Chloroplast SRP receptor homolog, alpha subunit CPFTSY; protein translocation, GTP-binding, nucleotide-binding, protein transport; 1.75A {Arabidopsis thaliana}
Probab=98.34 E-value=2.4e-07 Score=96.94 Aligned_cols=74 Identities=15% Similarity=0.072 Sum_probs=58.7
Q ss_pred EecceeeccCCcceEEEEECCCCCcHHHHHHHHHHhC-CCceEEEecCccccc-------------ccccccCCCCC-CC
Q 006117 54 RACQLLAQKNHGIILVGVAGPSGAGKTVFTEKVLNFM-PSIAVITMDNYNDSS-------------RIIDGNFDDPR-LT 118 (660)
Q Consensus 54 ~~Isl~i~~ge~~~IIGI~GpSGSGKSTLak~L~~lL-p~~g~I~lDg~~~~~-------------~~i~~vfq~p~-l~ 118 (660)
..++|.+++|+ +++|+|||||||||++++|++.+ |..|.|.+++.+... ..+++++|++. ++
T Consensus 91 ~~l~~~~~~g~---vi~lvG~nGsGKTTll~~Lag~l~~~~g~V~l~g~d~~r~~a~~ql~~~~~~~~i~~v~q~~~~~~ 167 (302)
T 3b9q_A 91 TELQLGFRKPA---VIMIVGVNGGGKTTSLGKLAHRLKNEGTKVLMAAGDTFRAAASDQLEIWAERTGCEIVVAEGDKAK 167 (302)
T ss_dssp CSCCCCSSSCE---EEEEECCTTSCHHHHHHHHHHHHHHTTCCEEEECCCCSCHHHHHHHHHHHHHHTCEEECCC--CCC
T ss_pred cccccccCCCc---EEEEEcCCCCCHHHHHHHHHHHHHHcCCeEEEEeecccchhHHHHHHHHHHhcCceEEEecCCccC
Confidence 56788888888 99999999999999999999998 677888887753211 24678899988 88
Q ss_pred chhhHHHHHHhh
Q 006117 119 DYDTLLENIRGL 130 (660)
Q Consensus 119 d~~tl~e~L~~L 130 (660)
+..++.+++...
T Consensus 168 ~~~~v~e~l~~~ 179 (302)
T 3b9q_A 168 AATVLSKAVKRG 179 (302)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHH
Confidence 888999988753
No 117
>1y63_A LMAJ004144AAA protein; structural genomics, protein structure initiative, PSI, SGPP structural genomics of pathogenic protozoa consortium; HET: ADP; 1.70A {Leishmania major} SCOP: c.37.1.1
Probab=98.25 E-value=2.7e-06 Score=81.31 Aligned_cols=43 Identities=16% Similarity=0.256 Sum_probs=32.1
Q ss_pred cceeeccCCcceEEEEECCCCCcHHHHHHHHHHhCCCceEEEecCc
Q 006117 56 CQLLAQKNHGIILVGVAGPSGAGKTVFTEKVLNFMPSIAVITMDNY 101 (660)
Q Consensus 56 Isl~i~~ge~~~IIGI~GpSGSGKSTLak~L~~lLp~~g~I~lDg~ 101 (660)
+++...++. +|+|+|++||||||+++.|+..+.+...++.|..
T Consensus 3 ~~~~~~~~~---~I~l~G~~GsGKSTv~~~La~~l~g~~~id~d~~ 45 (184)
T 1y63_A 3 GSMEQPKGI---NILITGTPGTGKTSMAEMIAAELDGFQHLEVGKL 45 (184)
T ss_dssp ---CCCSSC---EEEEECSTTSSHHHHHHHHHHHSTTEEEEEHHHH
T ss_pred cCcCCCCCC---EEEEECCCCCCHHHHHHHHHHhcCCCEEeeHHHH
Confidence 455555555 8999999999999999999998325567777764
No 118
>1znw_A Guanylate kinase, GMP kinase; ATP:GMP-phosphotransferase, TR; 2.10A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1znx_A* 1zny_A* 1znz_A* 1s4q_A 1z8f_A
Probab=98.25 E-value=1.6e-07 Score=91.64 Aligned_cols=68 Identities=19% Similarity=0.165 Sum_probs=40.9
Q ss_pred eEEEEecceeeccCCcceEEEEECCCCCcHHHHHHHHHHhCCCceEEEecCc----cc---ccccccccCCCCCCCchhh
Q 006117 50 FIVIRACQLLAQKNHGIILVGVAGPSGAGKTVFTEKVLNFMPSIAVITMDNY----ND---SSRIIDGNFDDPRLTDYDT 122 (660)
Q Consensus 50 ~~vL~~Isl~i~~ge~~~IIGI~GpSGSGKSTLak~L~~lLp~~g~I~lDg~----~~---~~~~i~~vfq~p~l~d~~t 122 (660)
..++++ ..+++|+ +++|+||||||||||+++|+++++. +.+++. .. ..+.++++||++..|+..+
T Consensus 9 ~~~~~~--~~i~~Ge---i~~l~GpnGsGKSTLl~~l~gl~~~---i~~~~~~~~~~~~~~~~~~i~~~~q~~~~~~~~~ 80 (207)
T 1znw_A 9 KPTARG--QPAAVGR---VVVLSGPSAVGKSTVVRCLRERIPN---LHFSVSATTRAPRPGEVDGVDYHFIDPTRFQQLI 80 (207)
T ss_dssp ------------CCC---EEEEECSTTSSHHHHHHHHHHHSTT---CEECCCEESSCCCTTCCBTTTBEECCHHHHHHHH
T ss_pred CcCCCC--CCCCCCC---EEEEECCCCCCHHHHHHHHHhhCCc---eEEcccccccCCcccccCCCeeEecCHHHHHHHH
Confidence 446677 5788999 9999999999999999999999852 112221 11 1235788898877665544
Q ss_pred HHH
Q 006117 123 LLE 125 (660)
Q Consensus 123 l~e 125 (660)
+.+
T Consensus 81 ~~~ 83 (207)
T 1znw_A 81 DQG 83 (207)
T ss_dssp HTT
T ss_pred hcC
Confidence 433
No 119
>2dpy_A FLII, flagellum-specific ATP synthase; beta barrel, alpha-beta structure, hydrolase; HET: ADP; 2.40A {Salmonella typhimurium}
Probab=98.24 E-value=2.7e-07 Score=101.33 Aligned_cols=78 Identities=14% Similarity=0.061 Sum_probs=62.9
Q ss_pred ceEEEEecceeeccCCcceEEEEECCCCCcHHHHHHHHHHhC-CCceEEEecCcc---cc------------cccccccC
Q 006117 49 FFIVIRACQLLAQKNHGIILVGVAGPSGAGKTVFTEKVLNFM-PSIAVITMDNYN---DS------------SRIIDGNF 112 (660)
Q Consensus 49 ~~~vL~~Isl~i~~ge~~~IIGI~GpSGSGKSTLak~L~~lL-p~~g~I~lDg~~---~~------------~~~i~~vf 112 (660)
...+|+++ |.+.+|+ ++||+||||||||||+++|+++. |+.|.|.++|.. .. .+.+.+++
T Consensus 144 g~~vld~v-l~i~~Gq---~~~IvG~sGsGKSTLl~~Iag~~~~~~G~i~~~G~r~~ev~~~~~~~~~~~~l~r~i~~v~ 219 (438)
T 2dpy_A 144 GVRAINAL-LTVGRGQ---RMGLFAGSGVGKSVLLGMMARYTRADVIVVGLIGERGREVKDFIENILGPDGRARSVVIAA 219 (438)
T ss_dssp SCHHHHHH-SCCBTTC---EEEEEECTTSSHHHHHHHHHHHSCCSEEEEEEESCCHHHHHHHHHTTTHHHHHHTEEEEEE
T ss_pred CceEEeee-EEecCCC---EEEEECCCCCCHHHHHHHHhcccCCCeEEEEEeceecHHHHHHHHhhccccccCceEEEEE
Confidence 45689999 9999999 99999999999999999999998 789999998862 11 13457888
Q ss_pred CC-CCCCchhhHHHHHHhh
Q 006117 113 DD-PRLTDYDTLLENIRGL 130 (660)
Q Consensus 113 q~-p~l~d~~tl~e~L~~L 130 (660)
|+ ..++++.++.+++...
T Consensus 220 q~~~~~~~~~~v~~~~~~~ 238 (438)
T 2dpy_A 220 PADVSPLLRMQGAAYATRI 238 (438)
T ss_dssp CTTSCHHHHHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHHHHH
Confidence 74 4566777888777553
No 120
>1qf9_A UMP/CMP kinase, protein (uridylmonophosphate/cytidylmonophosphate kinase); nucleoside monophosphate kinase, NMP kinase; HET: ADP C5P; 1.70A {Dictyostelium discoideum} SCOP: c.37.1.1 PDB: 1uke_A* 2ukd_A* 3ukd_A* 4ukd_A* 5ukd_A*
Probab=98.23 E-value=8.4e-07 Score=83.70 Aligned_cols=35 Identities=17% Similarity=0.204 Sum_probs=28.4
Q ss_pred ceEEEEECCCCCcHHHHHHHHHHhCCCceEEEecCc
Q 006117 66 IILVGVAGPSGAGKTVFTEKVLNFMPSIAVITMDNY 101 (660)
Q Consensus 66 ~~IIGI~GpSGSGKSTLak~L~~lLp~~g~I~lDg~ 101 (660)
+.+|+|+|++||||||+++.|+..+ +...++.|..
T Consensus 6 ~~~I~l~G~~GsGKsT~~~~L~~~l-~~~~i~~d~~ 40 (194)
T 1qf9_A 6 PNVVFVLGGPGSGKGTQCANIVRDF-GWVHLSAGDL 40 (194)
T ss_dssp CEEEEEEESTTSSHHHHHHHHHHHH-CCEEEEHHHH
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHh-CCeEeeHHHH
Confidence 4689999999999999999999876 3445666543
No 121
>3b85_A Phosphate starvation-inducible protein; PHOH2, ATPase, PFAM: PF02562, ST genomics, PSI-2, protein structure initiative; 2.35A {Corynebacterium glutamicum atcc 13032}
Probab=98.23 E-value=3.9e-08 Score=97.48 Aligned_cols=116 Identities=12% Similarity=0.082 Sum_probs=66.8
Q ss_pred ceEEEEecceeeccCCcceEEEEECCCCCcHHHHHHHHHHhCCCceEEEecCc----ccccccccccCCCC--CCCchh-
Q 006117 49 FFIVIRACQLLAQKNHGIILVGVAGPSGAGKTVFTEKVLNFMPSIAVITMDNY----NDSSRIIDGNFDDP--RLTDYD- 121 (660)
Q Consensus 49 ~~~vL~~Isl~i~~ge~~~IIGI~GpSGSGKSTLak~L~~lLp~~g~I~lDg~----~~~~~~i~~vfq~p--~l~d~~- 121 (660)
...+|+++ ++|+ ++||+||||||||||+++|+++-|+.|.|..... ....+.++++||++ .+..+.
T Consensus 12 ~~~~l~~i----~~Ge---~~~liG~nGsGKSTLl~~l~Gl~p~~G~I~~~~~~~~~~~~~~~ig~v~q~~~enl~~~~~ 84 (208)
T 3b85_A 12 QKHYVDAI----DTNT---IVFGLGPAGSGKTYLAMAKAVQALQSKQVSRIILTRPAVEAGEKLGFLPGTLNEKIDPYLR 84 (208)
T ss_dssp HHHHHHHH----HHCS---EEEEECCTTSSTTHHHHHHHHHHHHTTSCSEEEEEECSCCTTCCCCSSCC------CTTTH
T ss_pred HHHHHHhc----cCCC---EEEEECCCCCCHHHHHHHHhcCCCcCCeeeeEEecCCchhhhcceEEecCCHHHHHHHHHH
Confidence 34466774 7889 9999999999999999999998324455422111 11124578999976 110110
Q ss_pred hHHHHHHhhhcCcccccccccccccccccceeeecCCccEEEEecceeecccccCC
Q 006117 122 TLLENIRGLKEGKAVQVPIYDFKSSSRIGYRTLEVPSSRIVIIEGIYALSEKLRPL 177 (660)
Q Consensus 122 tl~e~L~~L~~Gk~I~~PiyD~s~~~rs~~~~~~v~~a~VVIVEGilaL~deLr~l 177 (660)
.+.+.+........+. ...+. .-++.+++..++.++.++.+++.||+...
T Consensus 85 ~~~~~~~~~~~~~~~~-~~l~~-----glGq~qrv~lAraL~~~p~lllLDEPts~ 134 (208)
T 3b85_A 85 PLHDALRDMVEPEVIP-KLMEA-----GIVEVAPLAYMRGRTLNDAFVILDEAQNT 134 (208)
T ss_dssp HHHHHHTTTSCTTHHH-HHHHT-----TSEEEEEGGGGTTCCBCSEEEEECSGGGC
T ss_pred HHHHHHHHhccHHHHH-HHHHh-----CCchHHHHHHHHHHhcCCCEEEEeCCccc
Confidence 1111111100000000 00111 11577888889999999999999998766
No 122
>1ukz_A Uridylate kinase; transferase; HET: ADP AMP; 1.90A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 1uky_A*
Probab=98.23 E-value=8.9e-06 Score=78.18 Aligned_cols=37 Identities=24% Similarity=0.328 Sum_probs=30.3
Q ss_pred CcceEEEEECCCCCcHHHHHHHHHHhCCCceEEEecCc
Q 006117 64 HGIILVGVAGPSGAGKTVFTEKVLNFMPSIAVITMDNY 101 (660)
Q Consensus 64 e~~~IIGI~GpSGSGKSTLak~L~~lLp~~g~I~lDg~ 101 (660)
.++.+|+|.|++||||||+++.|+..+ +...++.|..
T Consensus 13 ~~~~~I~l~G~~GsGKsT~~~~L~~~~-g~~~i~~d~~ 49 (203)
T 1ukz_A 13 DQVSVIFVLGGPGAGKGTQCEKLVKDY-SFVHLSAGDL 49 (203)
T ss_dssp TTCEEEEEECSTTSSHHHHHHHHHHHS-SCEEEEHHHH
T ss_pred CCCcEEEEECCCCCCHHHHHHHHHHHc-CceEEeHHHH
Confidence 346799999999999999999999887 4556776653
No 123
>2og2_A Putative signal recognition particle receptor; nucleotide-binding, protein transport; 2.00A {Arabidopsis thaliana}
Probab=98.22 E-value=6.9e-07 Score=95.81 Aligned_cols=74 Identities=15% Similarity=0.072 Sum_probs=60.0
Q ss_pred EecceeeccCCcceEEEEECCCCCcHHHHHHHHHHhC-CCceEEEecCccccc-------------ccccccCCCCC-CC
Q 006117 54 RACQLLAQKNHGIILVGVAGPSGAGKTVFTEKVLNFM-PSIAVITMDNYNDSS-------------RIIDGNFDDPR-LT 118 (660)
Q Consensus 54 ~~Isl~i~~ge~~~IIGI~GpSGSGKSTLak~L~~lL-p~~g~I~lDg~~~~~-------------~~i~~vfq~p~-l~ 118 (660)
..++|.+++|+ +|+|+|+|||||||++++|++++ |..|.|.+++.+... ..+++++|++. ++
T Consensus 148 ~~l~l~~~~g~---vi~lvG~nGsGKTTll~~Lag~l~~~~G~V~l~g~D~~r~~a~eql~~~~~r~~i~~v~q~~~~~~ 224 (359)
T 2og2_A 148 TELQLGFRKPA---VIMIVGVNGGGKTTSLGKLAHRLKNEGTKVLMAAGDTFRAAASDQLEIWAERTGCEIVVAEGDKAK 224 (359)
T ss_dssp CSCCCCSSSSE---EEEEECCTTSCHHHHHHHHHHHHHHTTCCEEEECCCCSCHHHHHHHHHHHHHHTCEEECCSSSSCC
T ss_pred CCcceecCCCe---EEEEEcCCCChHHHHHHHHHhhccccCCEEEEecccccccchhHHHHHHHHhcCeEEEEecccccC
Confidence 45788888888 99999999999999999999998 677888887753221 24678899988 88
Q ss_pred chhhHHHHHHhh
Q 006117 119 DYDTLLENIRGL 130 (660)
Q Consensus 119 d~~tl~e~L~~L 130 (660)
+..++.+++...
T Consensus 225 p~~tv~e~l~~~ 236 (359)
T 2og2_A 225 AATVLSKAVKRG 236 (359)
T ss_dssp HHHHHHHHHHHH
T ss_pred hhhhHHHHHHHH
Confidence 888899988753
No 124
>2jaq_A Deoxyguanosine kinase; transferase, deoxyribonucleoside kinase; HET: DCP; 2.3A {Mycoplasma mycoides subsp} PDB: 2jat_A* 2jas_A*
Probab=98.21 E-value=3e-07 Score=87.68 Aligned_cols=61 Identities=13% Similarity=0.237 Sum_probs=37.3
Q ss_pred CCCCEEEEEEcChhHHHHHHHHHHHHHhCCCHHHHH-HHHHhccccchhhcccCCc-CcCcEEEeCCC
Q 006117 176 PLIDLRVSVTGGVHFDLVKRVFRDIQRVGQEPEEII-HQISETVYPMYKAFIEPDL-QTAHIKIINKF 241 (660)
Q Consensus 176 ~llDlkIfVdad~dirLiRRI~RDv~eRGrs~E~Vl-~qy~~~v~P~~~~fIeP~k-~~ADiII~N~~ 241 (660)
...|..|||++|.++++.| +. .||+..+... ..+...+...|..+.++.. ..++++|+++.
T Consensus 123 ~~~d~vi~L~~~~e~~~~R-l~----~R~r~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~Id~~~ 185 (205)
T 2jaq_A 123 LSFDIVIYLRVSTKTAISR-IK----KRGRSEELLIGEEYWETLNKNYEEFYKQNVYDFPFFVVDAEL 185 (205)
T ss_dssp CCCSEEEEEECCHHHHHHH-HH----HHTCHHHHHSCHHHHHHHHHHHHHHHHHHTTTSCEEEEETTS
T ss_pred CCCCEEEEEeCCHHHHHHH-HH----HcCChhhhcCcHHHHHHHHHHHHHHHHHccccCcEEEEECCC
Confidence 5689999999998886544 32 2455544321 1333444555555555544 67899997664
No 125
>2gza_A Type IV secretion system protein VIRB11; ATPase, hydrolase; 2.60A {Brucella suis}
Probab=98.21 E-value=3.5e-07 Score=97.70 Aligned_cols=75 Identities=16% Similarity=0.228 Sum_probs=54.8
Q ss_pred EEecceeeccCCcceEEEEECCCCCcHHHHHHHHHHhC-CCceEEEecCccc-----ccccccccC-CCCCC--CchhhH
Q 006117 53 IRACQLLAQKNHGIILVGVAGPSGAGKTVFTEKVLNFM-PSIAVITMDNYND-----SSRIIDGNF-DDPRL--TDYDTL 123 (660)
Q Consensus 53 L~~Isl~i~~ge~~~IIGI~GpSGSGKSTLak~L~~lL-p~~g~I~lDg~~~-----~~~~i~~vf-q~p~l--~d~~tl 123 (660)
++++++.+++|+ +++|+||||||||||+++|.+++ |..|.|.++|... ....+++++ |++.. ++..++
T Consensus 165 ~~~l~~~i~~G~---~i~ivG~sGsGKSTll~~l~~~~~~~~g~I~ie~~~e~~~~~~~~~v~~v~~q~~~~~~~~~~t~ 241 (361)
T 2gza_A 165 MSFLRRAVQLER---VIVVAGETGSGKTTLMKALMQEIPFDQRLITIEDVPELFLPDHPNHVHLFYPSEAKEEENAPVTA 241 (361)
T ss_dssp HHHHHHHHHTTC---CEEEEESSSSCHHHHHHHHHTTSCTTSCEEEEESSSCCCCTTCSSEEEEECC----------CCH
T ss_pred HHHHHHHHhcCC---EEEEECCCCCCHHHHHHHHHhcCCCCceEEEECCccccCccccCCEEEEeecCccccccccccCH
Confidence 389999999999 99999999999999999999998 6899999987532 123456777 65543 355677
Q ss_pred HHHHHhh
Q 006117 124 LENIRGL 130 (660)
Q Consensus 124 ~e~L~~L 130 (660)
.+++...
T Consensus 242 ~~~i~~~ 248 (361)
T 2gza_A 242 ATLLRSC 248 (361)
T ss_dssp HHHHHHH
T ss_pred HHHHHHH
Confidence 7777653
No 126
>2yhs_A FTSY, cell division protein FTSY; cell cycle, protein targeting, simibi class GTPase, GTP-BIND membrane, nucleotide-binding; 1.60A {Escherichia coli} PDB: 2qy9_A 2xxa_B* 1fts_A
Probab=98.20 E-value=8.2e-07 Score=98.93 Aligned_cols=75 Identities=12% Similarity=0.115 Sum_probs=60.3
Q ss_pred EecceeeccCCcceEEEEECCCCCcHHHHHHHHHHhC-CCceEEEecCcccc-------------cccccccCCCCCCCc
Q 006117 54 RACQLLAQKNHGIILVGVAGPSGAGKTVFTEKVLNFM-PSIAVITMDNYNDS-------------SRIIDGNFDDPRLTD 119 (660)
Q Consensus 54 ~~Isl~i~~ge~~~IIGI~GpSGSGKSTLak~L~~lL-p~~g~I~lDg~~~~-------------~~~i~~vfq~p~l~d 119 (660)
++++|.+..|+ +|+|+|+|||||||++++|++++ +..|.|.+++.... ...+++++|++.+++
T Consensus 284 ~~Isl~i~~Ge---VI~LVGpNGSGKTTLl~~LAgll~~~~G~V~l~g~D~~r~aa~eQL~~~~~r~~I~vV~Q~~~~~p 360 (503)
T 2yhs_A 284 EPLNVEGKAPF---VILMVGVNGVGKTTTIGKLARQFEQQGKSVMLAAGDTFRAAAVEQLQVWGQRNNIPVIAQHTGADS 360 (503)
T ss_dssp CCCCCCSCTTE---EEEEECCTTSSHHHHHHHHHHHHHHTTCCEEEECCCTTCHHHHHHHHHHHHHHTCCEECCSTTCCH
T ss_pred CCceeeccCCe---EEEEECCCcccHHHHHHHHHHHhhhcCCeEEEecCcccchhhHHHHHHHHHhcCceEEecccCcCH
Confidence 67888888888 99999999999999999999998 66777777643221 124678899888888
Q ss_pred hhhHHHHHHhhh
Q 006117 120 YDTLLENIRGLK 131 (660)
Q Consensus 120 ~~tl~e~L~~L~ 131 (660)
..++.+++....
T Consensus 361 ~~tV~e~l~~a~ 372 (503)
T 2yhs_A 361 ASVIFDAIQAAK 372 (503)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHH
Confidence 888998887653
No 127
>3kb2_A SPBC2 prophage-derived uncharacterized protein YORR; alpha-beta protein., structural genomics, PSI-2, protein structure initiative; HET: G3D; 2.20A {Bacillus subtilis} SCOP: c.37.1.1 PDB: 2axp_A*
Probab=98.14 E-value=1.5e-06 Score=80.69 Aligned_cols=34 Identities=18% Similarity=0.293 Sum_probs=27.5
Q ss_pred eEEEEECCCCCcHHHHHHHHHHhCCCceEEEecCc
Q 006117 67 ILVGVAGPSGAGKTVFTEKVLNFMPSIAVITMDNY 101 (660)
Q Consensus 67 ~IIGI~GpSGSGKSTLak~L~~lLp~~g~I~lDg~ 101 (660)
.+|+|+|++||||||+++.|++.+ +...+..|.+
T Consensus 2 ~~i~l~G~~GsGKsT~~~~L~~~l-~~~~i~~d~~ 35 (173)
T 3kb2_A 2 TLIILEGPDCCFKSTVAAKLSKEL-KYPIIKGSSF 35 (173)
T ss_dssp CEEEEECSSSSSHHHHHHHHHHHH-CCCEEECCCH
T ss_pred eEEEEECCCCCCHHHHHHHHHHHh-CCeeecCccc
Confidence 489999999999999999999887 3345666644
No 128
>2bwj_A Adenylate kinase 5; phosphoryl transfer reaction, transferase; HET: AMP; 2.3A {Homo sapiens}
Probab=98.13 E-value=3.4e-07 Score=87.29 Aligned_cols=35 Identities=17% Similarity=0.297 Sum_probs=28.8
Q ss_pred ceEEEEECCCCCcHHHHHHHHHHhCCCceEEEecCc
Q 006117 66 IILVGVAGPSGAGKTVFTEKVLNFMPSIAVITMDNY 101 (660)
Q Consensus 66 ~~IIGI~GpSGSGKSTLak~L~~lLp~~g~I~lDg~ 101 (660)
+.+|+|+|++||||||+++.|+..+ +...++.|.+
T Consensus 12 ~~~I~l~G~~GsGKsT~a~~L~~~l-~~~~i~~d~~ 46 (199)
T 2bwj_A 12 CKIIFIIGGPGSGKGTQCEKLVEKY-GFTHLSTGEL 46 (199)
T ss_dssp SCEEEEEECTTSSHHHHHHHHHHHH-TCEEEEHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHHHHh-CCeEEcHHHH
Confidence 3499999999999999999999987 3456666654
No 129
>1rj9_A FTSY, signal recognition protein; SRP-GTPase domain, heterodimer, nucleotide twinning, protein complex, protein transport; HET: GCP; 1.90A {Thermus aquaticus} SCOP: a.24.13.1 c.37.1.10 PDB: 2q9c_A* 2q9b_A* 2q9a_A* 1okk_D* 2xkv_D 2iyl_D* 2cnw_D* 2j7p_D*
Probab=98.13 E-value=2.1e-06 Score=89.80 Aligned_cols=64 Identities=14% Similarity=0.010 Sum_probs=52.7
Q ss_pred ceEEEEECCCCCcHHHHHHHHHHhC-CCceEEEecCccccc-------------ccccccCCCCCCCchhhHHHHHHh
Q 006117 66 IILVGVAGPSGAGKTVFTEKVLNFM-PSIAVITMDNYNDSS-------------RIIDGNFDDPRLTDYDTLLENIRG 129 (660)
Q Consensus 66 ~~IIGI~GpSGSGKSTLak~L~~lL-p~~g~I~lDg~~~~~-------------~~i~~vfq~p~l~d~~tl~e~L~~ 129 (660)
+.+|+|+|||||||||++++|++++ |..|.|.+++.+... ..++++||++.+++..++.+++..
T Consensus 102 g~vi~lvG~nGsGKTTll~~Lagll~~~~g~V~l~g~D~~r~~a~~ql~~~~~~~~i~~v~q~~~~~p~~~v~~~v~~ 179 (304)
T 1rj9_A 102 GRVVLVVGVNGVGKTTTIAKLGRYYQNLGKKVMFCAGDTFRAAGGTQLSEWGKRLSIPVIQGPEGTDSAALAYDAVQA 179 (304)
T ss_dssp SSEEEEECSTTSSHHHHHHHHHHHHHTTTCCEEEECCCCSSTTTTHHHHHHHHHHTCCEECCCTTCCHHHHHHHHHHH
T ss_pred CeEEEEECCCCCcHHHHHHHHHHHHHhcCCEEEEEeecCCChhHHHHHHHHHHhcCceEEEeCCCCCHHHHHHHHHHH
Confidence 3499999999999999999999998 778888888754321 236789999999988888888865
No 130
>2npi_A Protein CLP1; CLP1-PCF11 complex, ATP binding, ternary complex, transcript; HET: ATP; 2.95A {Saccharomyces cerevisiae}
Probab=98.10 E-value=5.9e-07 Score=99.26 Aligned_cols=122 Identities=11% Similarity=0.024 Sum_probs=81.2
Q ss_pred ecceeeccCCcceEEEEECCCCCcHHHHHHHHHHhC-CCce-E-EEecCcccccccccccCCCCCCCc---hhhHHHHHH
Q 006117 55 ACQLLAQKNHGIILVGVAGPSGAGKTVFTEKVLNFM-PSIA-V-ITMDNYNDSSRIIDGNFDDPRLTD---YDTLLENIR 128 (660)
Q Consensus 55 ~Isl~i~~ge~~~IIGI~GpSGSGKSTLak~L~~lL-p~~g-~-I~lDg~~~~~~~i~~vfq~p~l~d---~~tl~e~L~ 128 (660)
+++|.+++|+ +++|+||||||||||+++|++++ |..| . |.+|+. ..+.++++||++.++. ..++.+++.
T Consensus 130 ~vsl~i~~Ge---~v~IvGpnGsGKSTLlr~L~Gl~~p~~G~~pI~vdg~--~~~~i~~vpq~~~l~~~~~~~tv~eni~ 204 (460)
T 2npi_A 130 KIRMSNFEGP---RVVIVGGSQTGKTSLSRTLCSYALKFNAYQPLYINLD--PQQPIFTVPGCISATPISDILDAQLPTW 204 (460)
T ss_dssp HHHHHSSSCC---CEEEEESTTSSHHHHHHHHHHTTHHHHCCCCEEEECC--TTSCSSSCSSCCEEEECCSCCCTTCTTC
T ss_pred cCceEeCCCC---EEEEECCCCCCHHHHHHHHhCcccccCCceeEEEcCC--ccCCeeeeccchhhcccccccchhhhhc
Confidence 7999999999 99999999999999999999998 7788 7 888873 2456788999875433 334555541
Q ss_pred hhh--cCc---cccccc---cccc----ccccccceeeecCCccE--EEEecce----eeccc-ccCCCCEE
Q 006117 129 GLK--EGK---AVQVPI---YDFK----SSSRIGYRTLEVPSSRI--VIIEGIY----ALSEK-LRPLIDLR 181 (660)
Q Consensus 129 ~L~--~Gk---~I~~Pi---yD~s----~~~rs~~~~~~v~~a~V--VIVEGil----aL~de-Lr~llDlk 181 (660)
... .+. ....+. +... ....++++.+++..+.. ++.++.+ ++.|| +...+|..
T Consensus 205 ~~~~~~~~~~~~~~~~ll~~~gl~~~~~~~~LSgGq~qrlalAra~rL~~~p~i~~sGLlLDEpPts~LD~~ 276 (460)
T 2npi_A 205 GQSLTSGATLLHNKQPMVKNFGLERINENKDLYLECISQLGQVVGQRLHLDPQVRRSGCIVDTPSISQLDEN 276 (460)
T ss_dssp SCBCBSSCCSSCCBCCEECCCCSSSGGGCHHHHHHHHHHHHHHHHHHHHHCHHHHHSCEEEECCCGGGSCSS
T ss_pred ccccccCcchHHHHHHHHHHhCCCcccchhhhhHHHHHHHHHHHHHHhccCcccCcceEEEeCCcccccChh
Confidence 110 010 000111 1000 22334455666666666 7777777 88888 88888863
No 131
>3tau_A Guanylate kinase, GMP kinase; structural genomics, center for structural genomics of infec diseases, csgid, putative guanylate kinase; HET: MSE; 2.05A {Listeria monocytogenes}
Probab=98.10 E-value=9.6e-07 Score=86.37 Aligned_cols=28 Identities=32% Similarity=0.516 Sum_probs=25.0
Q ss_pred ccCCcceEEEEECCCCCcHHHHHHHHHHhCC
Q 006117 61 QKNHGIILVGVAGPSGAGKTVFTEKVLNFMP 91 (660)
Q Consensus 61 ~~ge~~~IIGI~GpSGSGKSTLak~L~~lLp 91 (660)
++|. +|+|+|||||||||+++.|++.++
T Consensus 6 ~~g~---~i~l~GpsGsGKsTl~~~L~~~~~ 33 (208)
T 3tau_A 6 ERGL---LIVLSGPSGVGKGTVREAVFKDPE 33 (208)
T ss_dssp CCCC---EEEEECCTTSCHHHHHHHHHHSTT
T ss_pred CCCc---EEEEECcCCCCHHHHHHHHHhhCC
Confidence 3455 999999999999999999999984
No 132
>2cdn_A Adenylate kinase; phosphoryl transfer, associative mechanism, ATP-binding, nucleotide biosynthesis, nucleotide-binding, transferase; HET: ADP; 1.9A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1p4s_A
Probab=98.07 E-value=9.3e-06 Score=78.19 Aligned_cols=38 Identities=26% Similarity=0.341 Sum_probs=30.0
Q ss_pred CCcceEEEEECCCCCcHHHHHHHHHHhCCCceEEEecCc
Q 006117 63 NHGIILVGVAGPSGAGKTVFTEKVLNFMPSIAVITMDNY 101 (660)
Q Consensus 63 ge~~~IIGI~GpSGSGKSTLak~L~~lLp~~g~I~lDg~ 101 (660)
...+.+|+|.|++||||||+++.|+..+ +...+..|..
T Consensus 17 ~~~~~~I~l~G~~GsGKST~a~~La~~l-~~~~i~~d~~ 54 (201)
T 2cdn_A 17 RGSHMRVLLLGPPGAGKGTQAVKLAEKL-GIPQISTGEL 54 (201)
T ss_dssp CCSCCEEEEECCTTSSHHHHHHHHHHHH-TCCEEEHHHH
T ss_pred CCCCeEEEEECCCCCCHHHHHHHHHHHh-CCcEEehhHH
Confidence 3445699999999999999999999876 3346666654
No 133
>3euj_A Chromosome partition protein MUKB, linker; MUKB, MUKE, chromosome condensation, condensin, SMC, N subunit, ABC-type ATPase, WHD, ATP-binding; HET: AGS; 3.10A {Haemophilus ducreyi} PDB: 3euk_A*
Probab=98.03 E-value=1.5e-06 Score=96.51 Aligned_cols=50 Identities=16% Similarity=0.290 Sum_probs=45.2
Q ss_pred eEEEEecceeeccCCcceEEEEECCCCCcHHHHHHHHHHhC-CCceEEEecCccc
Q 006117 50 FIVIRACQLLAQKNHGIILVGVAGPSGAGKTVFTEKVLNFM-PSIAVITMDNYND 103 (660)
Q Consensus 50 ~~vL~~Isl~i~~ge~~~IIGI~GpSGSGKSTLak~L~~lL-p~~g~I~lDg~~~ 103 (660)
..++++++|.+++ + ++||+||||||||||+++|++++ |+.|.|.++|...
T Consensus 17 ~~~l~~vsl~i~~-e---~~~liG~nGsGKSTLl~~l~Gl~~p~~G~I~~~g~~~ 67 (483)
T 3euj_A 17 WNGFFARTFDFDE-L---VTTLSGGNGAGKSTTMAGFVTALIPDLTLLNFRNTTE 67 (483)
T ss_dssp ETTEEEEEEECCS-S---EEEEECCTTSSHHHHHHHHHHHHCCCTTTCCCCCTTS
T ss_pred cccccceEEEEcc-c---eEEEECCCCCcHHHHHHHHhcCCCCCCCEEEECCEEc
Confidence 3468999999999 8 99999999999999999999998 7889999988754
No 134
>1ex7_A Guanylate kinase; substrate-induced FIT, domain movement, GMP, ATP, substrate specificity, X-RAY diffraction, transferase; HET: 5GP; 1.90A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 1ex6_A* 1gky_A* 3sqk_A 4f4j_A
Probab=98.03 E-value=1.1e-05 Score=78.83 Aligned_cols=140 Identities=17% Similarity=0.183 Sum_probs=66.5
Q ss_pred EEEEECCCCCcHHHHHHHHHHhCCCceEEEecCcccccccccccCCCCCCCchhhHHHHHHhhhcCcccccccccccc-c
Q 006117 68 LVGVAGPSGAGKTVFTEKVLNFMPSIAVITMDNYNDSSRIIDGNFDDPRLTDYDTLLENIRGLKEGKAVQVPIYDFKS-S 146 (660)
Q Consensus 68 IIGI~GpSGSGKSTLak~L~~lLp~~g~I~lDg~~~~~~~i~~vfq~p~l~d~~tl~e~L~~L~~Gk~I~~PiyD~s~-~ 146 (660)
.|.|+||||||||||++.|....|+.-..+.--....++.-...-.+....+...+. ..+.+|.-++.-.|.-.. +
T Consensus 3 pIVi~GPSG~GK~Tl~~~L~~~~~~~~~~svs~TTR~pR~gE~~G~dY~Fvs~~eF~---~~i~~g~flE~~~~~g~~YG 79 (186)
T 1ex7_A 3 PIVISGPSGTGKSTLLKKLFAEYPDSFGFSVSSTTRTPRAGEVNGKDYNFVSVDEFK---SMIKNNEFIEWAQFSGNYYG 79 (186)
T ss_dssp CEEEECCTTSSHHHHHHHHHHHCTTTEEECCCEECSCCCTTCCBTTTBEECCHHHHH---HHHHTTCEEEEEEETTEEEE
T ss_pred EEEEECCCCCCHHHHHHHHHHhCCCCeEEEEEEeccCCCCCCcCCceeEeecHHHHH---HHHHcCCEEEEEEEcCceee
Confidence 467999999999999999998876422222111111111100001111112222222 333445554443322111 1
Q ss_pred ccccceeeecCCccEEEEecceeecccccCCC---CEEEEEEcChhHHHHHHHHHHHHHhCCCH-HHHHHHH
Q 006117 147 SRIGYRTLEVPSSRIVIIEGIYALSEKLRPLI---DLRVSVTGGVHFDLVKRVFRDIQRVGQEP-EEIIHQI 214 (660)
Q Consensus 147 ~rs~~~~~~v~~a~VVIVEGilaL~deLr~ll---DlkIfVdad~dirLiRRI~RDv~eRGrs~-E~Vl~qy 214 (660)
.....-...+.....+|++.-.-....++..+ -+.||+..|....|.+|+. .||... +.+..++
T Consensus 80 t~~~~v~~~l~~g~~vil~id~~g~~~~k~~~~~~~~~Ifi~pps~e~L~~RL~----~Rg~e~~e~i~~Rl 147 (186)
T 1ex7_A 80 STVASVKQVSKSGKTCILDIDMQGVKSVKAIPELNARFLFIAPPSVEDLKKRLE----GRGTETEESINKRL 147 (186)
T ss_dssp EEHHHHHHHHHHTSEEEEECCHHHHHHHHTCGGGCCEEEEEECSCHHHHHHHHH----HHCCSCHHHHHHHH
T ss_pred eecceeeehhhCCCEEEecCCHHHHHHHHHhcccCceEEEEeCCCHHHHHHHHH----hcCCCCHHHHHHHH
Confidence 11000011123345677776544444444432 3568999887666666654 457554 4444444
No 135
>2qm8_A GTPase/ATPase; G protein, G3E, metallochaperone, chaperone; HET: MSE; 1.70A {Methylobacterium extorquens} SCOP: c.37.1.10 PDB: 2qm7_A*
Probab=98.00 E-value=4e-07 Score=96.38 Aligned_cols=76 Identities=13% Similarity=0.074 Sum_probs=56.6
Q ss_pred ceeeeecCceEEEEecceeeccCCcceEEEEECCCCCcHHHHHHHHHHhC-CCceEEEecCcccc-----------cccc
Q 006117 41 DTLSFEKGFFIVIRACQLLAQKNHGIILVGVAGPSGAGKTVFTEKVLNFM-PSIAVITMDNYNDS-----------SRII 108 (660)
Q Consensus 41 ~~ls~~~g~~~vL~~Isl~i~~ge~~~IIGI~GpSGSGKSTLak~L~~lL-p~~g~I~lDg~~~~-----------~~~i 108 (660)
+.+++.++...+++++++.+.+++ +++|+|+||||||||+++|++.+ |..|.|.+.+.... ...+
T Consensus 33 ~~~~~~~~~~~~l~~i~~~~~~g~---~v~i~G~~GaGKSTLl~~l~g~~~~~~g~v~i~~~d~~~~~~~~~~~~~~~~i 109 (337)
T 2qm8_A 33 RRADHRAAVRDLIDAVLPQTGRAI---RVGITGVPGVGKSTTIDALGSLLTAAGHKVAVLAVDPSSTRTGGSILGDKTRM 109 (337)
T ss_dssp SSHHHHHHHHHHHHHHGGGCCCSE---EEEEECCTTSCHHHHHHHHHHHHHHTTCCEEEEEECGGGGSSCCCSSCCGGGS
T ss_pred CCcccccChHHHHHhCCcccCCCe---EEEEECCCCCCHHHHHHHHHHhhhhCCCEEEEEEEcCcccccccchHHHhhhh
Confidence 334444444567899999999998 99999999999999999999987 55666666554221 1346
Q ss_pred cccCCCCCCCc
Q 006117 109 DGNFDDPRLTD 119 (660)
Q Consensus 109 ~~vfq~p~l~d 119 (660)
++++|++.+|.
T Consensus 110 ~~v~q~~~~~~ 120 (337)
T 2qm8_A 110 ARLAIDRNAFI 120 (337)
T ss_dssp TTGGGCTTEEE
T ss_pred eeeccCccccc
Confidence 77888877664
No 136
>2obl_A ESCN; ATPase, hydrolase; 1.80A {Escherichia coli O127} PDB: 2obm_A*
Probab=97.95 E-value=3e-06 Score=90.34 Aligned_cols=49 Identities=20% Similarity=0.205 Sum_probs=44.5
Q ss_pred ceEEEEecceeeccCCcceEEEEECCCCCcHHHHHHHHHHhC-CCceEEEecCc
Q 006117 49 FFIVIRACQLLAQKNHGIILVGVAGPSGAGKTVFTEKVLNFM-PSIAVITMDNY 101 (660)
Q Consensus 49 ~~~vL~~Isl~i~~ge~~~IIGI~GpSGSGKSTLak~L~~lL-p~~g~I~lDg~ 101 (660)
...+|+++ |.+.+|+ ++||+||||||||||+++|++.. |+.|.+.+.|.
T Consensus 58 g~~ald~l-l~i~~Gq---~~gIiG~nGaGKTTLl~~I~g~~~~~~g~i~~~G~ 107 (347)
T 2obl_A 58 GVRAIDGL-LTCGIGQ---RIGIFAGSGVGKSTLLGMICNGASADIIVLALIGE 107 (347)
T ss_dssp SCHHHHHH-SCEETTC---EEEEEECTTSSHHHHHHHHHHHSCCSEEEEEEESC
T ss_pred CCEEEEee-eeecCCC---EEEEECCCCCCHHHHHHHHhcCCCCCEEEEEEecc
Confidence 45689999 9999999 99999999999999999999998 78888888764
No 137
>1zuh_A Shikimate kinase; alpha-beta protein, transferase; 1.80A {Helicobacter pylori} PDB: 1zui_A* 3hr7_A 3muf_A* 3mrs_A 3n2e_A*
Probab=97.93 E-value=5e-06 Score=77.66 Aligned_cols=35 Identities=17% Similarity=0.271 Sum_probs=27.8
Q ss_pred ceEEEEECCCCCcHHHHHHHHHHhCCCceEEEecCc
Q 006117 66 IILVGVAGPSGAGKTVFTEKVLNFMPSIAVITMDNY 101 (660)
Q Consensus 66 ~~IIGI~GpSGSGKSTLak~L~~lLp~~g~I~lDg~ 101 (660)
+.+|+|+|+.||||||+++.|+..+ +...+..|..
T Consensus 7 ~~~i~l~G~~GsGKSTva~~La~~l-g~~~id~D~~ 41 (168)
T 1zuh_A 7 MQHLVLIGFMGSGKSSLAQELGLAL-KLEVLDTDMI 41 (168)
T ss_dssp -CEEEEESCTTSSHHHHHHHHHHHH-TCCEEEHHHH
T ss_pred cceEEEECCCCCCHHHHHHHHHHHh-CCCEEEChHH
Confidence 3489999999999999999999976 3446666653
No 138
>2c95_A Adenylate kinase 1; transferase, AP4A, nucleotide kinase, transferase ATP-bindi; HET: B4P; 1.71A {Homo sapiens} PDB: 1z83_A* 3adk_A
Probab=97.92 E-value=1e-05 Score=76.71 Aligned_cols=35 Identities=20% Similarity=0.313 Sum_probs=28.5
Q ss_pred ceEEEEECCCCCcHHHHHHHHHHhCCCceEEEecCc
Q 006117 66 IILVGVAGPSGAGKTVFTEKVLNFMPSIAVITMDNY 101 (660)
Q Consensus 66 ~~IIGI~GpSGSGKSTLak~L~~lLp~~g~I~lDg~ 101 (660)
+.+|+|+|++||||||+++.|+..+ +...++.|..
T Consensus 9 ~~~I~l~G~~GsGKsT~~~~La~~l-~~~~i~~d~~ 43 (196)
T 2c95_A 9 TNIIFVVGGPGSGKGTQCEKIVQKY-GYTHLSTGDL 43 (196)
T ss_dssp SCEEEEEECTTSSHHHHHHHHHHHH-CCEEEEHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHHHHh-CCeEEcHHHH
Confidence 4599999999999999999999877 3446666653
No 139
>2pt7_A CAG-ALFA; ATPase, protein-protein complex, type IV secretion, hydrolas binding complex; 2.40A {Helicobacter pylori} SCOP: c.37.1.11 PDB: 1nly_A* 1nlz_A 1opx_A* 1g6o_A
Probab=97.92 E-value=1.3e-06 Score=92.18 Aligned_cols=48 Identities=23% Similarity=0.389 Sum_probs=44.5
Q ss_pred EEEecceeeccCCcceEEEEECCCCCcHHHHHHHHHHhC-CCceEEEecCcc
Q 006117 52 VIRACQLLAQKNHGIILVGVAGPSGAGKTVFTEKVLNFM-PSIAVITMDNYN 102 (660)
Q Consensus 52 vL~~Isl~i~~ge~~~IIGI~GpSGSGKSTLak~L~~lL-p~~g~I~lDg~~ 102 (660)
+++++++.+++|+ +++|+||||||||||+++|++++ |+.|.|.++|..
T Consensus 160 ~l~~l~~~i~~g~---~v~i~G~~GsGKTTll~~l~g~~~~~~g~i~i~~~~ 208 (330)
T 2pt7_A 160 AISAIKDGIAIGK---NVIVCGGTGSGKTTYIKSIMEFIPKEERIISIEDTE 208 (330)
T ss_dssp HHHHHHHHHHHTC---CEEEEESTTSCHHHHHHHGGGGSCTTSCEEEEESSC
T ss_pred HHhhhhhhccCCC---EEEEECCCCCCHHHHHHHHhCCCcCCCcEEEECCee
Confidence 6789999999999 99999999999999999999998 788999998863
No 140
>2vf7_A UVRA2, excinuclease ABC, subunit A.; DNA-binding protein, nucleotide-binding, zinc-binding domain, SOS response, metal-binding; HET: ADP; 2.30A {Deinococcus radiodurans} PDB: 2vf8_A*
Probab=97.91 E-value=1.4e-06 Score=102.59 Aligned_cols=35 Identities=17% Similarity=0.318 Sum_probs=32.0
Q ss_pred EEEecceeeccCCcceEEEEECCCCCcHHHHHHH-HHHh
Q 006117 52 VIRACQLLAQKNHGIILVGVAGPSGAGKTVFTEK-VLNF 89 (660)
Q Consensus 52 vL~~Isl~i~~ge~~~IIGI~GpSGSGKSTLak~-L~~l 89 (660)
+|++|+|.++.|+ ++||+|+||||||||++. |.+.
T Consensus 512 ~L~~vsl~i~~Ge---iv~I~G~nGSGKSTLl~~~L~g~ 547 (842)
T 2vf7_A 512 NLDNLDVRFPLGV---MTSVTGVSGSGKSTLVSQALVDA 547 (842)
T ss_dssp TEEEEEEEEESSS---EEEEECCTTSSHHHHCCCCCHHH
T ss_pred ccccceEEEcCCC---EEEEEcCCCcCHHHHHHHHHHHH
Confidence 5999999999999 999999999999999996 6544
No 141
>4aby_A DNA repair protein RECN; hydrolase, double strand break repair, ATPase, nucleotide binding domain; HET: DNA; 3.00A {Deinococcus radiodurans}
Probab=97.89 E-value=2e-06 Score=91.99 Aligned_cols=38 Identities=18% Similarity=0.325 Sum_probs=32.8
Q ss_pred ceEEEEecceeeccCCcceEEEEECCCCCcHHHHHHHHHHhC
Q 006117 49 FFIVIRACQLLAQKNHGIILVGVAGPSGAGKTVFTEKVLNFM 90 (660)
Q Consensus 49 ~~~vL~~Isl~i~~ge~~~IIGI~GpSGSGKSTLak~L~~lL 90 (660)
.+.++++++|.+.+| +++|+|+||||||||+++|..++
T Consensus 47 nf~~l~~v~l~~~~G----~~~lvG~NGaGKStLl~aI~~l~ 84 (415)
T 4aby_A 47 NLATITQLELELGGG----FCAFTGETGAGKSIIVDALGLLL 84 (415)
T ss_dssp EETTEEEEEEECCSS----EEEEEESHHHHHHHHTHHHHHHT
T ss_pred cccceeeEEEecCCC----cEEEECCCCCCHHHHHHHHHHHh
Confidence 345689999998654 79999999999999999998776
No 142
>3e70_C DPA, signal recognition particle receptor; FTSY, SRP-GTPase, protein-targeting, transport protein; HET: GDP; 1.97A {Pyrococcus furiosus} PDB: 3dmd_B 3dm9_B*
Probab=97.88 E-value=8.4e-06 Score=86.26 Aligned_cols=66 Identities=12% Similarity=0.086 Sum_probs=51.4
Q ss_pred cceEEEEECCCCCcHHHHHHHHHHhC-CCceEEEecCccccc-----------cc--ccccCCCCCCCchhhHHHHHHhh
Q 006117 65 GIILVGVAGPSGAGKTVFTEKVLNFM-PSIAVITMDNYNDSS-----------RI--IDGNFDDPRLTDYDTLLENIRGL 130 (660)
Q Consensus 65 ~~~IIGI~GpSGSGKSTLak~L~~lL-p~~g~I~lDg~~~~~-----------~~--i~~vfq~p~l~d~~tl~e~L~~L 130 (660)
++.+++|+|||||||||++++|++.+ |..|.|.+++.+... +. +.+++|.+.+++..++.+++...
T Consensus 128 ~g~vi~lvG~nGaGKTTll~~Lag~l~~~~g~V~l~g~D~~r~~a~eql~~~~~~~gv~~v~q~~~~~p~~~v~e~l~~~ 207 (328)
T 3e70_C 128 KPYVIMFVGFNGSGKTTTIAKLANWLKNHGFSVVIAASDTFRAGAIEQLEEHAKRIGVKVIKHSYGADPAAVAYDAIQHA 207 (328)
T ss_dssp SSEEEEEECCTTSSHHHHHHHHHHHHHHTTCCEEEEEECCSSTTHHHHHHHHHHHTTCEEECCCTTCCHHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHhcCCEEEEEeecccccchHHHHHHHHHHcCceEEeccccCCHHHHHHHHHHHH
Confidence 34599999999999999999999998 677777777654321 12 33778888888888999988653
No 143
>1zp6_A Hypothetical protein ATU3015; alpha-beta protein., structural genomics, PSI, protein struc initiative; 3.20A {Agrobacterium tumefaciens str} SCOP: c.37.1.25
Probab=97.87 E-value=7.5e-06 Score=77.64 Aligned_cols=38 Identities=18% Similarity=0.443 Sum_probs=32.9
Q ss_pred eccCCcceEEEEECCCCCcHHHHHHHHHHhCCCceEEEecCc
Q 006117 60 AQKNHGIILVGVAGPSGAGKTVFTEKVLNFMPSIAVITMDNY 101 (660)
Q Consensus 60 i~~ge~~~IIGI~GpSGSGKSTLak~L~~lLp~~g~I~lDg~ 101 (660)
+++|+ +|+|+|+|||||||++++|++. ++.|.|.+++.
T Consensus 6 i~~g~---~i~l~G~~GsGKSTl~~~La~~-~~~g~i~i~~d 43 (191)
T 1zp6_A 6 DLGGN---ILLLSGHPGSGKSTIAEALANL-PGVPKVHFHSD 43 (191)
T ss_dssp CCTTE---EEEEEECTTSCHHHHHHHHHTC-SSSCEEEECTT
T ss_pred CCCCe---EEEEECCCCCCHHHHHHHHHhc-cCCCeEEEccc
Confidence 45666 9999999999999999999998 47788888875
No 144
>1lvg_A Guanylate kinase, GMP kinase; transferase; HET: ADP 5GP; 2.10A {Mus musculus} SCOP: c.37.1.1
Probab=97.87 E-value=4.2e-05 Score=74.27 Aligned_cols=24 Identities=38% Similarity=0.587 Sum_probs=22.7
Q ss_pred EEEEECCCCCcHHHHHHHHHHhCC
Q 006117 68 LVGVAGPSGAGKTVFTEKVLNFMP 91 (660)
Q Consensus 68 IIGI~GpSGSGKSTLak~L~~lLp 91 (660)
+++|+||||||||||+++|.+.++
T Consensus 6 ~i~lvGpsGaGKSTLl~~L~~~~~ 29 (198)
T 1lvg_A 6 PVVLSGPSGAGKSTLLKKLFQEHS 29 (198)
T ss_dssp CEEEECCTTSSHHHHHHHHHHHHT
T ss_pred EEEEECCCCCCHHHHHHHHHhhCc
Confidence 899999999999999999999874
No 145
>1tf7_A KAIC; homohexamer, hexamer, circadian clock protein; HET: ATP; 2.80A {Synechococcus SP} SCOP: c.37.1.11 c.37.1.11 PDB: 3s1a_A* 1u9i_A* 2gbl_A* 3dvl_A* 3k0a_A* 3k09_A* 3jzm_A* 3k0e_A* 4dug_A* 3ua2_A* 3k0c_A* 3k0f_A*
Probab=97.86 E-value=1.8e-06 Score=96.32 Aligned_cols=64 Identities=14% Similarity=0.079 Sum_probs=51.4
Q ss_pred ceEEEEecce-eeccCCcceEEEEECCCCCcHHHHHHH--HHHhC-CCceEEEecCcccc------cccccccCCCC
Q 006117 49 FFIVIRACQL-LAQKNHGIILVGVAGPSGAGKTVFTEK--VLNFM-PSIAVITMDNYNDS------SRIIDGNFDDP 115 (660)
Q Consensus 49 ~~~vL~~Isl-~i~~ge~~~IIGI~GpSGSGKSTLak~--L~~lL-p~~g~I~lDg~~~~------~~~i~~vfq~p 115 (660)
...+|+++++ .+++|+ +++|+|+||||||||+++ +++++ |+.|.|.+++.... .+.++++||++
T Consensus 24 g~~~Ld~i~~G~i~~Ge---~~~l~G~nGsGKSTL~~~~ll~Gl~~~~~g~i~v~g~~~~~~~~~~~~~~g~~~q~~ 97 (525)
T 1tf7_A 24 MIEGFDDISHGGLPIGR---STLVSGTSGTGKTLFSIQFLYNGIIEFDEPGVFVTFEETPQDIIKNARSFGWDLAKL 97 (525)
T ss_dssp CCTTHHHHTTSSEETTS---EEEEEESTTSSHHHHHHHHHHHHHHHHCCCEEEEESSSCHHHHHHHHGGGTCCHHHH
T ss_pred CchhHHHhcCCCCCCCe---EEEEEcCCCCCHHHHHHHHHHHHHHhCCCCEEEEEEeCCHHHHHHHHHHcCCChHHh
Confidence 4567999999 999999 999999999999999999 67887 58899999886421 13456666653
No 146
>3szr_A Interferon-induced GTP-binding protein MX1; interferon-induced antiviral GTPase, membrane associated, PR binding; 3.50A {Homo sapiens} PDB: 3zys_B
Probab=97.86 E-value=4.2e-06 Score=95.32 Aligned_cols=63 Identities=14% Similarity=0.134 Sum_probs=46.5
Q ss_pred EEEEECCCCCcHHHHHHHHHHhC-C-CceEEEecCccc----------ccccccccCCCCCCCchhhHHHHHHhh
Q 006117 68 LVGVAGPSGAGKTVFTEKVLNFM-P-SIAVITMDNYND----------SSRIIDGNFDDPRLTDYDTLLENIRGL 130 (660)
Q Consensus 68 IIGI~GpSGSGKSTLak~L~~lL-p-~~g~I~lDg~~~----------~~~~i~~vfq~p~l~d~~tl~e~L~~L 130 (660)
.|||+|+||||||||+++|+|++ | +.|.|..+|... ....++++||++.+++..++.+++...
T Consensus 47 ~iaIvG~nGsGKSTLL~~I~Gl~~P~~sG~vt~~g~~i~~~~~~~~~~~~~~i~~v~Q~~~l~~~~tv~e~i~~~ 121 (608)
T 3szr_A 47 AIAVIGDQSSGKSSVLEALSGVALPRGSGIVTRCPLVLKLKKLVNEDKWRGKVSYQDYEIEISDASEVEKEINKA 121 (608)
T ss_dssp CEECCCCTTSCHHHHHHHHHSCC-------CCCSCEEEEEEECSSSSCCEEEESCC---CCCCCHHHHHTTHHHH
T ss_pred eEEEECCCCChHHHHHHHHhCCCCCCCCCeEEEcCEEEEEecCCccccceeEEeeecccccCCCHHHHHHHHHHH
Confidence 49999999999999999999998 7 799998888642 124578999999999999999998764
No 147
>2eyu_A Twitching motility protein PILT; pilus retraction motor, C-terminal domain PILT, protein transport; 1.87A {Aquifex aeolicus}
Probab=97.85 E-value=2.5e-06 Score=87.21 Aligned_cols=46 Identities=20% Similarity=0.270 Sum_probs=40.3
Q ss_pred EEEEecceeeccCCcceEEEEECCCCCcHHHHHHHHHHhC-CC-ceEEEecCc
Q 006117 51 IVIRACQLLAQKNHGIILVGVAGPSGAGKTVFTEKVLNFM-PS-IAVITMDNY 101 (660)
Q Consensus 51 ~vL~~Isl~i~~ge~~~IIGI~GpSGSGKSTLak~L~~lL-p~-~g~I~lDg~ 101 (660)
.+|++++ +++|+ +++|+|||||||||++++|++++ |. .|.|.+++.
T Consensus 15 ~vl~~i~--i~~g~---~v~i~Gp~GsGKSTll~~l~g~~~~~~~G~I~~~g~ 62 (261)
T 2eyu_A 15 DKVLELC--HRKMG---LILVTGPTGSGKSTTIASMIDYINQTKSYHIITIED 62 (261)
T ss_dssp THHHHGG--GCSSE---EEEEECSTTCSHHHHHHHHHHHHHHHCCCEEEEEES
T ss_pred HHHHHHh--hCCCC---EEEEECCCCccHHHHHHHHHHhCCCCCCCEEEEcCC
Confidence 3678888 78888 99999999999999999999998 55 788888765
No 148
>2qag_B Septin-6, protein NEDD5; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens}
Probab=97.85 E-value=7.5e-07 Score=97.59 Aligned_cols=42 Identities=12% Similarity=0.142 Sum_probs=34.6
Q ss_pred eecCceEEEEecceeeccCCcceE--EEEECCCCCcHHHHHHHHHHhC
Q 006117 45 FEKGFFIVIRACQLLAQKNHGIIL--VGVAGPSGAGKTVFTEKVLNFM 90 (660)
Q Consensus 45 ~~~g~~~vL~~Isl~i~~ge~~~I--IGI~GpSGSGKSTLak~L~~lL 90 (660)
+.++... +++++|.+++|+ + +||+|+||||||||+++|++..
T Consensus 23 ~~y~~~~-L~~vsl~i~~Ge---i~~vaLvG~nGaGKSTLln~L~G~~ 66 (427)
T 2qag_B 23 VGFDSLP-DQLVNKSVSQGF---CFNILCVGETGLGKSTLMDTLFNTK 66 (427)
T ss_dssp C-CC--C-HHHHHHSCC-CC---EEEEEEECSTTSSSHHHHHHHHTSC
T ss_pred EEECCee-cCCCceEecCCC---eeEEEEECCCCCCHHHHHHHHhCcc
Confidence 3445555 999999999999 8 9999999999999999999984
No 149
>4a74_A DNA repair and recombination protein RADA; hydrolase, recombinase; HET: DNA ANP; 1.48A {Pyrococcus furiosus} PDB: 4a6x_A* 4a6p_A* 4a7o_A*
Probab=97.83 E-value=5.6e-06 Score=80.34 Aligned_cols=58 Identities=21% Similarity=0.200 Sum_probs=40.5
Q ss_pred eeccCCcceEEEEECCCCCcHHHHHHHHHHhC-C-------CceEEEecCccc-ccccccccCCCCCCCc
Q 006117 59 LAQKNHGIILVGVAGPSGAGKTVFTEKVLNFM-P-------SIAVITMDNYND-SSRIIDGNFDDPRLTD 119 (660)
Q Consensus 59 ~i~~ge~~~IIGI~GpSGSGKSTLak~L~~lL-p-------~~g~I~lDg~~~-~~~~i~~vfq~p~l~d 119 (660)
-+++|+ +++|+||||||||||+++|++.+ + ..+.+.+++... ....+..++|...+++
T Consensus 21 gi~~G~---~~~l~G~nGsGKSTll~~l~g~~~~~~~~g~~~~~~i~~~~~~~~~~~~i~~~~~~~~~~~ 87 (231)
T 4a74_A 21 GIETQA---ITEVFGEFGSGKTQLAHTLAVMVQLPPEEGGLNGSVIWIDTENTFRPERIREIAQNRGLDP 87 (231)
T ss_dssp SEESSE---EEEEEESTTSSHHHHHHHHHHHTTSCGGGTCCSCEEEEEESSSCCCHHHHHHHHHHTTSCH
T ss_pred CCCCCc---EEEEECCCCCCHHHHHHHHHHHHhcccccCCCCCEEEEEECCCCCCHHHHHHHHHHcCCCH
Confidence 477888 99999999999999999999965 3 344777776532 1223444555544443
No 150
>3cm0_A Adenylate kinase; ATP-binding, cytoplasm, nucleotide biosynthesis, nucleotide-binding, transferase, structural genomics; 1.80A {Thermus thermophilus}
Probab=97.83 E-value=2.4e-05 Score=73.84 Aligned_cols=32 Identities=22% Similarity=0.326 Sum_probs=25.6
Q ss_pred eEEEEECCCCCcHHHHHHHHHHhCCCceEEEec
Q 006117 67 ILVGVAGPSGAGKTVFTEKVLNFMPSIAVITMD 99 (660)
Q Consensus 67 ~IIGI~GpSGSGKSTLak~L~~lLp~~g~I~lD 99 (660)
.+|+|+|++||||||+++.|+..+ +...++.|
T Consensus 5 ~~I~l~G~~GsGKST~~~~La~~l-~~~~i~~d 36 (186)
T 3cm0_A 5 QAVIFLGPPGAGKGTQASRLAQEL-GFKKLSTG 36 (186)
T ss_dssp EEEEEECCTTSCHHHHHHHHHHHH-TCEEECHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHHh-CCeEecHH
Confidence 489999999999999999999876 33344444
No 151
>1tq4_A IIGP1, interferon-inducible GTPase; interferon gamma, dimer, immunology, signaling protein; HET: GDP; 1.95A {Mus musculus} SCOP: c.37.1.8 PDB: 1tqd_A* 1tq6_A* 1tpz_A* 1tq2_A*
Probab=97.82 E-value=1.9e-06 Score=94.08 Aligned_cols=52 Identities=15% Similarity=0.273 Sum_probs=44.4
Q ss_pred EEEEecceeeccCC-----------------cceEEEEECCCCCcHHHHHHHHHHhC-CCceEEEecCcc
Q 006117 51 IVIRACQLLAQKNH-----------------GIILVGVAGPSGAGKTVFTEKVLNFM-PSIAVITMDNYN 102 (660)
Q Consensus 51 ~vL~~Isl~i~~ge-----------------~~~IIGI~GpSGSGKSTLak~L~~lL-p~~g~I~lDg~~ 102 (660)
.++++|++.+++|+ ...++||+|+||||||||+++|+++. |+.|.|..++..
T Consensus 37 ~~l~~is~~i~~Ge~~~~~~~i~~~L~~~~~~~~~valvG~nGaGKSTLln~L~Gl~~p~~GsI~~~g~~ 106 (413)
T 1tq4_A 37 EILNLIELRMRAGNIQLTNSAISDALKEIDSSVLNVAVTGETGSGKSSFINTLRGIGNEEEGAAKTGVVE 106 (413)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHCCEEEEEEECTTSSHHHHHHHHHTCCTTSTTSCCCCC--
T ss_pred HHhhhccceecCCCCcccchhhhhhhhhcccCCeEEEEECCCCCcHHHHHHHHhCCCCccCceEEECCee
Confidence 46899999999998 56799999999999999999999998 677877777653
No 152
>4eaq_A DTMP kinase, thymidylate kinase; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, MTBI, transferase; HET: ATM; 1.85A {Staphylococcus aureus subsp} PDB: 4dwj_A* 4f4i_A
Probab=97.81 E-value=5.5e-05 Score=75.53 Aligned_cols=39 Identities=26% Similarity=0.377 Sum_probs=27.2
Q ss_pred EEecceeeccCCcceEEEEECCCCCcHHHHHHHHHHhCC
Q 006117 53 IRACQLLAQKNHGIILVGVAGPSGAGKTVFTEKVLNFMP 91 (660)
Q Consensus 53 L~~Isl~i~~ge~~~IIGI~GpSGSGKSTLak~L~~lLp 91 (660)
|.++++......+..+|.|.|++||||||+++.|++.++
T Consensus 13 ~~~~~~~~~~~~~g~~i~i~G~~GsGKsT~~~~l~~~l~ 51 (229)
T 4eaq_A 13 LGTENLYFQSNAMSAFITFEGPEGSGKTTVINEVYHRLV 51 (229)
T ss_dssp -------CCCCCCCEEEEEECCTTSCHHHHHHHHHHHHT
T ss_pred ccCCCeeEeecCCCeEEEEEcCCCCCHHHHHHHHHHHHh
Confidence 566777666444456999999999999999999999984
No 153
>2fbl_A Hypothetical protein NE1496; APC5855, PSI, protein structure initiative, MCSG, midwest center for structural genomics; 1.90A {Nitrosomonas europaea} SCOP: d.63.1.2
Probab=97.81 E-value=5.4e-05 Score=71.96 Aligned_cols=94 Identities=14% Similarity=0.050 Sum_probs=71.6
Q ss_pred eeeeeecCCCCCcccccce-EEEeecCCeEEEEEeeeecCCCceeeeeEEEEeehhhHHHHhhcCCeEEEEEEEeeeEee
Q 006117 280 TYDIYLLPPGEDPDACQSY-LRMRNRDGKYNLMFEEWVTDSPFIISPRITFEVSVRLLGGLMALGYTIATILKRSSHIFY 358 (660)
Q Consensus 280 ~~DIYl~pP~~d~~~tde~-LRvR~~dg~~~Ltykg~~~d~~fi~rp~~efeV~v~~~~gL~~LGy~~aa~V~R~re~y~ 358 (660)
..+.|+.++ .+.. +|+|..|..+.|||||+. .++|.+.+++|....-.-|+++. .+..|.|+|.+|.
T Consensus 25 i~QgYl~~~------~~~~~vRvR~~g~~~~lT~Kg~~----g~~R~E~E~~I~~~~~~~ll~~~--~~~~I~K~Ry~~~ 92 (153)
T 2fbl_A 25 LRQGYLTTP------TDSIELRLRQQGTEYFMTLKSEG----GLSRQEYEIQIDVTQFEMLWPAT--EGRRVEKTRYSGK 92 (153)
T ss_dssp EEEEESSCT------TSSSEEEEEEETTEEEEEEEC----------CEEEEEECHHHHHHHGGGG--TTSEEEEEEEEEE
T ss_pred EEEEEecCC------CCceEEEEEEeCCEEEEEEEcCC----CceeEEEEEECCHHHHHHHHhhC--CCCEEEEEEEEEE
Confidence 338899765 3466 999999999999999998 57799999999977667776543 3778999999999
Q ss_pred cCc-EEEEeecccccC--cceEEEEeccHH
Q 006117 359 DDR-VCVKTDWLEQLN--RKYVQVQGRDRL 385 (660)
Q Consensus 359 ~g~-~~i~lD~ve~Lg--~~FveI~g~~~~ 385 (660)
.++ .++.+|.++|-. =.++||+-.+.+
T Consensus 93 ~~~~~~~evD~f~g~~~gL~~aEvE~~~e~ 122 (153)
T 2fbl_A 93 LPDGQLFELDVFAGHLSPLMLVEVEFLSED 122 (153)
T ss_dssp CTTCCEEEEEEECGGGTTCEEEEEEESSHH
T ss_pred cCCcEEEEEEEECCcCCCeEEEEEEecCcc
Confidence 999 999999999843 358899877654
No 154
>2r6f_A Excinuclease ABC subunit A; UVRA, nucleotide excision repair, DNA repair, ABC ATPase, at cassette, DNA damage, DNA excision; HET: ADP; 3.20A {Geobacillus stearothermophilus} PDB: 3uwx_A
Probab=97.79 E-value=4.4e-06 Score=99.33 Aligned_cols=33 Identities=27% Similarity=0.479 Sum_probs=31.0
Q ss_pred EEEecceeeccCCcceEEEEECCCCCcHHHHHHHHH
Q 006117 52 VIRACQLLAQKNHGIILVGVAGPSGAGKTVFTEKVL 87 (660)
Q Consensus 52 vL~~Isl~i~~ge~~~IIGI~GpSGSGKSTLak~L~ 87 (660)
+|++|+|.++.|+ ++||+|+||||||||++.|.
T Consensus 639 ~Lk~Vsl~I~~Ge---iv~I~G~nGSGKSTLl~~ll 671 (972)
T 2r6f_A 639 NLKNVSVKIPLGT---FVAVTGVSGSGKSTLVNEVL 671 (972)
T ss_dssp SCCSEEEEEESSS---EEECCBCTTSSHHHHHTTTH
T ss_pred ccccceEEEcCCC---EEEEEcCCCCCHHHHHHHHH
Confidence 5899999999999 99999999999999999853
No 155
>3pih_A Uvrabc system protein A; hydrolase, ABC ATPase, DNA repair, nucleotide excision repai hydrolase-DNA complex; HET: DNA; 2.90A {Thermotoga maritima}
Probab=97.78 E-value=1.6e-06 Score=102.97 Aligned_cols=58 Identities=5% Similarity=0.007 Sum_probs=40.8
Q ss_pred ccccccccceeeecCCccEEEEec---ceeecccccCCCCEEEEEEcChhHHHHHHHHHHHHHhCCCH
Q 006117 143 FKSSSRIGYRTLEVPSSRIVIIEG---IYALSEKLRPLIDLRVSVTGGVHFDLVKRVFRDIQRVGQEP 207 (660)
Q Consensus 143 ~s~~~rs~~~~~~v~~a~VVIVEG---ilaL~deLr~llDlkIfVdad~dirLiRRI~RDv~eRGrs~ 207 (660)
......++++.+++..++.++-+. .+++.||+...+|. .+...+..+.+.+.+.|.++
T Consensus 801 q~~~~LSGGErQRV~LAraL~~~p~~p~LLILDEPTsGLD~-------~~~~~L~~lL~~L~~~G~TV 861 (916)
T 3pih_A 801 QPATTLSGGEAQRIKLASELRKRDTGRTLYILDEPTVGLHF-------EDVRKLVEVLHRLVDRGNTV 861 (916)
T ss_dssp CCSTTCCHHHHHHHHHHHHHTSCCCSSEEEEEESTTTTCCH-------HHHHHHHHHHHHHHHTTCEE
T ss_pred CCccCCCHHHHHHHHHHHHHhhCCCCCCEEEEECCCCCCCH-------HHHHHHHHHHHHHHhcCCEE
Confidence 344556777777777777666543 57777999999997 56666667777776667765
No 156
>3trf_A Shikimate kinase, SK; amino acid biosynthesis, transferase; 2.60A {Coxiella burnetii}
Probab=97.78 E-value=2.4e-06 Score=80.85 Aligned_cols=34 Identities=21% Similarity=0.223 Sum_probs=27.9
Q ss_pred eEEEEECCCCCcHHHHHHHHHHhCCCceEEEecCc
Q 006117 67 ILVGVAGPSGAGKTVFTEKVLNFMPSIAVITMDNY 101 (660)
Q Consensus 67 ~IIGI~GpSGSGKSTLak~L~~lLp~~g~I~lDg~ 101 (660)
.+|.|+|++||||||+++.|+..+ +...++.|.+
T Consensus 6 ~~i~l~G~~GsGKst~a~~La~~l-~~~~i~~d~~ 39 (185)
T 3trf_A 6 TNIYLIGLMGAGKTSVGSQLAKLT-KRILYDSDKE 39 (185)
T ss_dssp CEEEEECSTTSSHHHHHHHHHHHH-CCCEEEHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHHHh-CCCEEEChHH
Confidence 488999999999999999999987 3446666654
No 157
>2pt5_A Shikimate kinase, SK; aromatic amino acid biosynthesis, P-loop kinase, SHI kinase, shikimate pathway; 2.10A {Aquifex aeolicus}
Probab=97.77 E-value=2e-06 Score=79.99 Aligned_cols=33 Identities=15% Similarity=0.163 Sum_probs=27.0
Q ss_pred EEEEECCCCCcHHHHHHHHHHhCCCceEEEecCc
Q 006117 68 LVGVAGPSGAGKTVFTEKVLNFMPSIAVITMDNY 101 (660)
Q Consensus 68 IIGI~GpSGSGKSTLak~L~~lLp~~g~I~lDg~ 101 (660)
+|+|.|++||||||+++.|+..+ +...++.|..
T Consensus 2 ~I~l~G~~GsGKsT~a~~L~~~l-~~~~i~~d~~ 34 (168)
T 2pt5_A 2 RIYLIGFMCSGKSTVGSLLSRSL-NIPFYDVDEE 34 (168)
T ss_dssp EEEEESCTTSCHHHHHHHHHHHH-TCCEEEHHHH
T ss_pred eEEEECCCCCCHHHHHHHHHHHh-CCCEEECcHH
Confidence 68999999999999999999976 3446666654
No 158
>3uie_A Adenylyl-sulfate kinase 1, chloroplastic; rossmann fold, transferase-transferase complex; HET: ADX ANP; 1.79A {Arabidopsis thaliana} SCOP: c.37.1.0 PDB: 4fxp_A*
Probab=97.76 E-value=1.9e-06 Score=83.33 Aligned_cols=55 Identities=20% Similarity=0.273 Sum_probs=38.1
Q ss_pred eeecCceEEEEecceeeccCCcceEEEEECCCCCcHHHHHHHHHHhCCCceEE--EecCc
Q 006117 44 SFEKGFFIVIRACQLLAQKNHGIILVGVAGPSGAGKTVFTEKVLNFMPSIAVI--TMDNY 101 (660)
Q Consensus 44 s~~~g~~~vL~~Isl~i~~ge~~~IIGI~GpSGSGKSTLak~L~~lLp~~g~I--~lDg~ 101 (660)
+...+...+.+.+++..++|. +|+|+|+|||||||+++.|++.++..|.+ .+|+.
T Consensus 6 ~~~~~~~~~~~~~~~~~~~g~---~i~l~G~sGsGKSTl~~~La~~l~~~G~~~~~~d~d 62 (200)
T 3uie_A 6 KWHECSVEKVDRQRLLDQKGC---VIWVTGLSGSGKSTLACALNQMLYQKGKLCYILDGD 62 (200)
T ss_dssp ----CCCCHHHHHHHHTSCCE---EEEEECSTTSSHHHHHHHHHHHHHHTTCCEEEEEHH
T ss_pred cccccccCHHHHHHhcCCCCe---EEEEECCCCCCHHHHHHHHHHHHHhcCceEEEecCc
Confidence 333444445566666666677 99999999999999999999988323333 66654
No 159
>2ygr_A Uvrabc system protein A; hydrolase, nucleotide excision repair; 3.40A {Mycobacterium tuberculosis} PDB: 3zqj_A
Probab=97.73 E-value=9.1e-06 Score=96.91 Aligned_cols=32 Identities=25% Similarity=0.418 Sum_probs=30.5
Q ss_pred EEEecceeeccCCcceEEEEECCCCCcHHHHHHHH
Q 006117 52 VIRACQLLAQKNHGIILVGVAGPSGAGKTVFTEKV 86 (660)
Q Consensus 52 vL~~Isl~i~~ge~~~IIGI~GpSGSGKSTLak~L 86 (660)
+|++|+|.++.|+ ++||+|+||||||||++.|
T Consensus 657 ~Lk~Vsl~I~~Ge---ivaI~G~nGSGKSTLl~~i 688 (993)
T 2ygr_A 657 NLRGIDVSFPLGV---LTSVTGVSGSGKSTLVNDI 688 (993)
T ss_dssp TCCSEEEEEESSS---EEEEECSTTSSHHHHHTTT
T ss_pred cccCceEEECCCC---EEEEEcCCCCCHHHHHHHH
Confidence 4899999999999 9999999999999999985
No 160
>3dl0_A Adenylate kinase; phosphotransferase, zinc coordination, ATP-binding, binding, nucleotide biosynthesis, nucleotide-binding, trans; HET: AP5; 1.58A {Bacillus subtilis} PDB: 1p3j_A* 2ori_A* 2eu8_A* 2oo7_A* 2p3s_A* 2qaj_A* 2osb_A* 3dkv_A* 1zin_A* 1zio_A* 1zip_A* 1s3g_A*
Probab=97.72 E-value=6.6e-06 Score=80.00 Aligned_cols=33 Identities=24% Similarity=0.341 Sum_probs=27.4
Q ss_pred EEEEECCCCCcHHHHHHHHHHhCCCceEEEecCc
Q 006117 68 LVGVAGPSGAGKTVFTEKVLNFMPSIAVITMDNY 101 (660)
Q Consensus 68 IIGI~GpSGSGKSTLak~L~~lLp~~g~I~lDg~ 101 (660)
.|+|+|++||||||+++.|+..+ +...++.|+.
T Consensus 2 ~I~l~G~~GsGKsT~a~~L~~~~-~~~~i~~d~~ 34 (216)
T 3dl0_A 2 NLVLMGLPGAGKGTQGERIVEKY-GIPHISTGDM 34 (216)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHS-SCCEEEHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHh-CCcEEeHHHH
Confidence 58899999999999999999887 4556777654
No 161
>1p9r_A General secretion pathway protein E; bacterial type II secretion system cytoplasmic protein - GSPE, putative ATPase/ ATP binding protein; 2.50A {Vibrio cholerae} SCOP: c.37.1.11 PDB: 1p9w_A*
Probab=97.70 E-value=7.6e-06 Score=89.36 Aligned_cols=46 Identities=22% Similarity=0.212 Sum_probs=35.9
Q ss_pred EEEEecceeeccCCcceEEEEECCCCCcHHHHHHHHHHhC-CCceEEEecCc
Q 006117 51 IVIRACQLLAQKNHGIILVGVAGPSGAGKTVFTEKVLNFM-PSIAVITMDNY 101 (660)
Q Consensus 51 ~vL~~Isl~i~~ge~~~IIGI~GpSGSGKSTLak~L~~lL-p~~g~I~lDg~ 101 (660)
.+|+++ + ..+++ +++|+|||||||||+++.|.+.+ +..|.|.+.+.
T Consensus 157 ~~L~~l-~-~~~gg---ii~I~GpnGSGKTTlL~allg~l~~~~g~I~~~ed 203 (418)
T 1p9r_A 157 DNFRRL-I-KRPHG---IILVTGPTGSGKSTTLYAGLQELNSSERNILTVED 203 (418)
T ss_dssp HHHHHH-H-TSSSE---EEEEECSTTSCHHHHHHHHHHHHCCTTSCEEEEES
T ss_pred HHHHHH-H-HhcCC---eEEEECCCCCCHHHHHHHHHhhcCCCCCEEEEecc
Confidence 345555 3 35667 99999999999999999999998 66777766654
No 162
>3iij_A Coilin-interacting nuclear ATPase protein; alpha and beta proteins (A/B), protein binding, transferase, phosphotransferase; HET: ADP; 1.76A {Homo sapiens} SCOP: c.37.1.1 PDB: 3iik_A 3iil_A* 3iim_A* 1rkb_A
Probab=97.68 E-value=4.7e-05 Score=71.82 Aligned_cols=34 Identities=18% Similarity=0.313 Sum_probs=28.0
Q ss_pred eEEEEECCCCCcHHHHHHHHHHhCCCceEEEecCc
Q 006117 67 ILVGVAGPSGAGKTVFTEKVLNFMPSIAVITMDNY 101 (660)
Q Consensus 67 ~IIGI~GpSGSGKSTLak~L~~lLp~~g~I~lDg~ 101 (660)
.+|.|+|++||||||+++.|+..+ +...+..|..
T Consensus 12 ~~i~i~G~~GsGKst~~~~l~~~~-~~~~~~~d~~ 45 (180)
T 3iij_A 12 PNILLTGTPGVGKTTLGKELASKS-GLKYINVGDL 45 (180)
T ss_dssp CCEEEECSTTSSHHHHHHHHHHHH-CCEEEEHHHH
T ss_pred CeEEEEeCCCCCHHHHHHHHHHHh-CCeEEEHHHH
Confidence 478899999999999999999887 4556666654
No 163
>2plr_A DTMP kinase, probable thymidylate kinase; TMP-binding, ATP-binding, structural GEN NPPSFA; HET: 1PE PGE EPE PG4; 1.60A {Sulfolobus tokodaii}
Probab=97.67 E-value=4.4e-05 Score=72.99 Aligned_cols=26 Identities=19% Similarity=0.413 Sum_probs=23.5
Q ss_pred ceEEEEECCCCCcHHHHHHHHHHhCC
Q 006117 66 IILVGVAGPSGAGKTVFTEKVLNFMP 91 (660)
Q Consensus 66 ~~IIGI~GpSGSGKSTLak~L~~lLp 91 (660)
+.+|.|.|++||||||+++.|+..++
T Consensus 4 ~~~I~i~G~~GsGKsT~~~~L~~~l~ 29 (213)
T 2plr_A 4 GVLIAFEGIDGSGKSSQATLLKDWIE 29 (213)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHHHHT
T ss_pred CeEEEEEcCCCCCHHHHHHHHHHHHh
Confidence 35899999999999999999999874
No 164
>1u0l_A Probable GTPase ENGC; permutation, OB-fold, zinc-finger, structural genomics, BSGC structure funded by NIH, protein structure initiative, PSI; HET: GDP; 2.80A {Thermotoga maritima} SCOP: b.40.4.5 c.37.1.8
Probab=97.66 E-value=1.9e-05 Score=82.02 Aligned_cols=56 Identities=16% Similarity=0.214 Sum_probs=36.6
Q ss_pred eccCCcceEEEEECCCCCcHHHHHHHHHHhC-CCceEEEe---cCccccc-------ccccccCCCCCCC
Q 006117 60 AQKNHGIILVGVAGPSGAGKTVFTEKVLNFM-PSIAVITM---DNYNDSS-------RIIDGNFDDPRLT 118 (660)
Q Consensus 60 i~~ge~~~IIGI~GpSGSGKSTLak~L~~lL-p~~g~I~l---Dg~~~~~-------~~i~~vfq~p~l~ 118 (660)
...++ +++|+|+||||||||+++|+++. |..|.|.. +|.+... +..+++||.|...
T Consensus 166 ~l~ge---iv~l~G~sG~GKSTll~~l~g~~~~~~G~i~~~~~~g~~~t~~~~~~~~~~~g~v~q~p~~~ 232 (301)
T 1u0l_A 166 YLKGK---ISTMAGLSGVGKSSLLNAINPGLKLRVSEVSEKLQRGRHTTTTAQLLKFDFGGYVVDTPGFA 232 (301)
T ss_dssp HHSSS---EEEEECSTTSSHHHHHHHHSTTCCCC-------------CCCSCCEEECTTSCEEESSCSST
T ss_pred HhcCC---eEEEECCCCCcHHHHHHHhcccccccccceecccCCCCCceeeeEEEEcCCCCEEEECcCCC
Confidence 44566 99999999999999999999998 78999998 6654321 2467888888754
No 165
>2rhm_A Putative kinase; P-loop containing nucleoside triphosphate hydrolases fold, S genomics, joint center for structural genomics, JCSG; HET: MSE; 1.70A {Chloroflexus aurantiacus}
Probab=97.66 E-value=3.1e-05 Score=73.23 Aligned_cols=35 Identities=20% Similarity=0.412 Sum_probs=28.1
Q ss_pred ceEEEEECCCCCcHHHHHHHHHHhCCCceEEEecCc
Q 006117 66 IILVGVAGPSGAGKTVFTEKVLNFMPSIAVITMDNY 101 (660)
Q Consensus 66 ~~IIGI~GpSGSGKSTLak~L~~lLp~~g~I~lDg~ 101 (660)
+.+|.|+|++||||||+++.|+..+ +...++.|..
T Consensus 5 ~~~I~l~G~~GsGKST~~~~L~~~l-~~~~i~~D~~ 39 (193)
T 2rhm_A 5 PALIIVTGHPATGKTTLSQALATGL-RLPLLSKDAF 39 (193)
T ss_dssp CEEEEEEESTTSSHHHHHHHHHHHH-TCCEEEHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHc-CCeEecHHHH
Confidence 4699999999999999999999876 3345665554
No 166
>3fdi_A Uncharacterized protein; cytidylate kinase like protein, PSI, MCSG, PRK04182 class ME structural genomics, protein structure initiative; 2.20A {Eubacterium ventriosum}
Probab=97.66 E-value=3.8e-05 Score=75.28 Aligned_cols=24 Identities=17% Similarity=0.427 Sum_probs=23.0
Q ss_pred eEEEEECCCCCcHHHHHHHHHHhC
Q 006117 67 ILVGVAGPSGAGKTVFTEKVLNFM 90 (660)
Q Consensus 67 ~IIGI~GpSGSGKSTLak~L~~lL 90 (660)
.+|+|.|+.||||||+++.|++.+
T Consensus 7 ~iI~i~g~~GsGk~ti~~~la~~l 30 (201)
T 3fdi_A 7 IIIAIGREFGSGGHLVAKKLAEHY 30 (201)
T ss_dssp CEEEEEECTTSSHHHHHHHHHHHT
T ss_pred eEEEEeCCCCCCHHHHHHHHHHHh
Confidence 589999999999999999999988
No 167
>2bdt_A BH3686; alpha-beta protein, structural genomics, PSI, protein struct initiative, northeast structural genomics consortium, NESG, function; 2.40A {Bacillus halodurans} SCOP: c.37.1.25
Probab=97.63 E-value=2.1e-05 Score=74.84 Aligned_cols=60 Identities=13% Similarity=0.036 Sum_probs=37.5
Q ss_pred EEEEECCCCCcHHHHHHHHHHhCCCceEEEecCccccc-ccccccCCCCCCCchhhHHHHHHh
Q 006117 68 LVGVAGPSGAGKTVFTEKVLNFMPSIAVITMDNYNDSS-RIIDGNFDDPRLTDYDTLLENIRG 129 (660)
Q Consensus 68 IIGI~GpSGSGKSTLak~L~~lLp~~g~I~lDg~~~~~-~~i~~vfq~p~l~d~~tl~e~L~~ 129 (660)
+++|+|+|||||||+++.|++.. .|.+.+++..... ...++.++........++.+++..
T Consensus 4 ii~l~G~~GaGKSTl~~~L~~~~--~g~~~i~~d~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ 64 (189)
T 2bdt_A 4 LYIITGPAGVGKSTTCKRLAAQL--DNSAYIEGDIINHMVVGGYRPPWESDELLALTWKNITD 64 (189)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHS--SSEEEEEHHHHHTTCCTTCCCGGGCHHHHHHHHHHHHH
T ss_pred EEEEECCCCCcHHHHHHHHhccc--CCeEEEcccchhhhhccccccCccchhHHHHHHHHHHH
Confidence 89999999999999999999854 4556666532211 123344443333333455555544
No 168
>2yv5_A YJEQ protein; hydrolase, GTPase, permutation, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: GDP; 1.90A {Aquifex aeolicus}
Probab=97.62 E-value=1.6e-05 Score=82.74 Aligned_cols=50 Identities=18% Similarity=0.181 Sum_probs=36.2
Q ss_pred EEEEECCCCCcHHHHHHHHHHhC-CCceEEEe---cCccccc-------ccccccCCCCCCC
Q 006117 68 LVGVAGPSGAGKTVFTEKVLNFM-PSIAVITM---DNYNDSS-------RIIDGNFDDPRLT 118 (660)
Q Consensus 68 IIGI~GpSGSGKSTLak~L~~lL-p~~g~I~l---Dg~~~~~-------~~i~~vfq~p~l~ 118 (660)
+++|+|+||||||||+++|. .+ |..|.|.. +|.+... ...++++|.|...
T Consensus 167 i~~l~G~sG~GKSTLln~l~-~~~~~~G~i~~~~~~G~~~t~~~~~~~~~~~g~v~d~pg~~ 227 (302)
T 2yv5_A 167 ICILAGPSGVGKSSILSRLT-GEELRTQEVSEKTERGRHTTTGVRLIPFGKGSFVGDTPGFS 227 (302)
T ss_dssp EEEEECSTTSSHHHHHHHHH-SCCCCCSCC---------CCCCEEEEEETTTEEEESSCCCS
T ss_pred EEEEECCCCCCHHHHHHHHH-HhhCcccccccccCCCCCceeeEEEEEcCCCcEEEECcCcC
Confidence 99999999999999999999 77 78899998 7754321 2467888988653
No 169
>3a4m_A L-seryl-tRNA(SEC) kinase; P-loop motif, walker A motif, ATP binding motif, ATP- binding, nucleotide-binding, transferase; HET: ADP; 1.79A {Methanocaldococcus jannaschii} PDB: 3a4l_A* 3a4n_A 3am1_A* 3add_A* 3adc_A* 3adb_A*
Probab=97.61 E-value=0.00013 Score=73.78 Aligned_cols=25 Identities=28% Similarity=0.666 Sum_probs=22.9
Q ss_pred ceEEEEECCCCCcHHHHHHHHHHhC
Q 006117 66 IILVGVAGPSGAGKTVFTEKVLNFM 90 (660)
Q Consensus 66 ~~IIGI~GpSGSGKSTLak~L~~lL 90 (660)
+.+|.|+|++||||||+++.|+..+
T Consensus 4 ~~lIvl~G~pGSGKSTla~~La~~L 28 (260)
T 3a4m_A 4 IMLIILTGLPGVGKSTFSKNLAKIL 28 (260)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHHHH
T ss_pred CEEEEEEcCCCCCHHHHHHHHHHHH
Confidence 5689999999999999999999874
No 170
>2qnr_A Septin-2, protein NEDD5; structural genomics consortium, SGC, mitosis, GDP, C cycle, cell division, GTP-binding, nucleotide-binding; HET: GDP; 2.60A {Homo sapiens} PDB: 2qa5_A* 3ftq_A*
Probab=97.61 E-value=4.5e-06 Score=86.83 Aligned_cols=49 Identities=20% Similarity=0.202 Sum_probs=21.2
Q ss_pred eeeecCceEEEEecceeeccCCcceEEEEECCCCCcHHHHHHHHHHh-C-CCceEEEecCc
Q 006117 43 LSFEKGFFIVIRACQLLAQKNHGIILVGVAGPSGAGKTVFTEKVLNF-M-PSIAVITMDNY 101 (660)
Q Consensus 43 ls~~~g~~~vL~~Isl~i~~ge~~~IIGI~GpSGSGKSTLak~L~~l-L-p~~g~I~lDg~ 101 (660)
++..++...++++++|.+ +|+|+||+|||||++.|.+. + |..| +..++.
T Consensus 4 l~~~~~~~~~l~~~~~~I---------~lvG~nG~GKSTLl~~L~g~~~~~~~g-i~~~g~ 54 (301)
T 2qnr_A 4 LPNQVHRKSVKKGFEFTL---------MVVGESGLGKSTLINSLFLTDLYPERV-ISGAAE 54 (301)
T ss_dssp --------------CEEE---------EEEEETTSSHHHHHHHHHC---------------
T ss_pred CcceECCEEEEcCCCEEE---------EEECCCCCCHHHHHHHHhCCCccCCCC-cccCCc
Confidence 445556677889888765 99999999999999999876 4 6666 555443
No 171
>2oap_1 GSPE-2, type II secretion system protein; hexameric ATPase, hydrolase; HET: ANP; 2.95A {Archaeoglobus fulgidus} PDB: 2oaq_1
Probab=97.57 E-value=1.2e-05 Score=89.94 Aligned_cols=48 Identities=21% Similarity=0.373 Sum_probs=42.5
Q ss_pred EEEecceeeccCCcceEEEEECCCCCcHHHHHHHHHHhC-CCceEEEecCcc
Q 006117 52 VIRACQLLAQKNHGIILVGVAGPSGAGKTVFTEKVLNFM-PSIAVITMDNYN 102 (660)
Q Consensus 52 vL~~Isl~i~~ge~~~IIGI~GpSGSGKSTLak~L~~lL-p~~g~I~lDg~~ 102 (660)
+++.+++.+++|. +++|+|||||||||++++|++++ |+.|.|.++|..
T Consensus 249 ~l~~l~~~v~~g~---~i~I~GptGSGKTTlL~aL~~~i~~~~giitied~~ 297 (511)
T 2oap_1 249 VLAYLWLAIEHKF---SAIVVGETASGKTTTLNAIMMFIPPDAKVVSIEDTR 297 (511)
T ss_dssp HHHHHHHHHHTTC---CEEEEESTTSSHHHHHHHHGGGSCTTCCEEEEESSC
T ss_pred HHHHHHHHHhCCC---EEEEECCCCCCHHHHHHHHHhhCCCCCCEEEEcCcc
Confidence 5677888888888 89999999999999999999999 688999988753
No 172
>2bbw_A Adenylate kinase 4, AK4; nucleotide kinase, nucleotide binding, human, structura genomics, structural genomics consortium, SGC, transferase; HET: GP5; 2.05A {Homo sapiens} PDB: 2ar7_A* 3ndp_A
Probab=97.54 E-value=8.9e-06 Score=81.16 Aligned_cols=64 Identities=14% Similarity=0.255 Sum_probs=41.4
Q ss_pred ceEEEEECCCCCcHHHHHHHHH---HhC-CCceEEEecCccccc---ccccccCCCCCCCchhhHHHHHHh
Q 006117 66 IILVGVAGPSGAGKTVFTEKVL---NFM-PSIAVITMDNYNDSS---RIIDGNFDDPRLTDYDTLLENIRG 129 (660)
Q Consensus 66 ~~IIGI~GpSGSGKSTLak~L~---~lL-p~~g~I~lDg~~~~~---~~i~~vfq~p~l~d~~tl~e~L~~ 129 (660)
+.+|+|+|+|||||||++++|+ +.. ++.|.+..++..... ..+...++++.+++..++.+++..
T Consensus 27 ~~~i~l~G~~GsGKSTl~k~La~~lg~~~~~~G~i~~~~~~~~~~~~~~i~~~~~~~~~~~~~~v~~~l~~ 97 (246)
T 2bbw_A 27 LLRAVILGPPGSGKGTVCQRIAQNFGLQHLSSGHFLRENIKASTEVGEMAKQYIEKSLLVPDHVITRLMMS 97 (246)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHHHCCCCEEHHHHHHHHHHTTCHHHHHHHHHHHTTCCCCHHHHHHHHHH
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHhCCeEecHHHHHHHHHhcCChHHHHHHHHHHcCCCCCHHHHHHHHHH
Confidence 3499999999999999999999 444 344444444322111 122334566666777777777654
No 173
>1ltq_A Polynucleotide kinase; phosphatase, alpha/beta, P-loop, transferase; HET: ADP; 2.33A {Enterobacteria phage T4} SCOP: c.108.1.9 c.37.1.1 PDB: 1rc8_A* 1rpz_A* 1rrc_A* 2ia5_A
Probab=97.52 E-value=8.7e-05 Score=75.70 Aligned_cols=36 Identities=22% Similarity=0.412 Sum_probs=28.4
Q ss_pred ceEEEEECCCCCcHHHHHHHHHHhCCCceEEEecCc
Q 006117 66 IILVGVAGPSGAGKTVFTEKVLNFMPSIAVITMDNY 101 (660)
Q Consensus 66 ~~IIGI~GpSGSGKSTLak~L~~lLp~~g~I~lDg~ 101 (660)
+.+|.|+|++||||||+++.|+..+.+...|+.|.+
T Consensus 2 ~~~I~l~G~~GsGKST~a~~L~~~~~~~~~i~~D~~ 37 (301)
T 1ltq_A 2 KKIILTIGCPGSGKSTWAREFIAKNPGFYNINRDDY 37 (301)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHHHSTTEEEECHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHhCCCcEEecccHH
Confidence 358999999999999999999986534556666643
No 174
>2ehv_A Hypothetical protein PH0186; KAIC, RECA ATPase, unknown function; HET: ADP; 2.07A {Pyrococcus horikoshii} PDB: 2zts_A*
Probab=97.50 E-value=5.2e-05 Score=74.38 Aligned_cols=39 Identities=18% Similarity=0.170 Sum_probs=31.2
Q ss_pred eeccCCcceEEEEECCCCCcHHHHHHHHH--HhC-CCceEEEecC
Q 006117 59 LAQKNHGIILVGVAGPSGAGKTVFTEKVL--NFM-PSIAVITMDN 100 (660)
Q Consensus 59 ~i~~ge~~~IIGI~GpSGSGKSTLak~L~--~lL-p~~g~I~lDg 100 (660)
-+++|+ +++|+||||||||||+++|+ +.+ ++.+.+.+++
T Consensus 26 gi~~G~---~~~l~GpnGsGKSTLl~~i~~~~~~~~~~~~~~~~~ 67 (251)
T 2ehv_A 26 GFPEGT---TVLLTGGTGTGKTTFAAQFIYKGAEEYGEPGVFVTL 67 (251)
T ss_dssp SEETTC---EEEEECCTTSSHHHHHHHHHHHHHHHHCCCEEEEES
T ss_pred CCCCCc---EEEEEeCCCCCHHHHHHHHHHHHHHhCCCeEEEEEc
Confidence 578899 99999999999999999999 553 4455555554
No 175
>3ney_A 55 kDa erythrocyte membrane protein; structural genomics consortium, SGC, 55 kDa erythrocyte MEMB protein; 2.26A {Homo sapiens} SCOP: c.37.1.0
Probab=97.50 E-value=0.00021 Score=70.41 Aligned_cols=24 Identities=25% Similarity=0.472 Sum_probs=22.9
Q ss_pred EEEEECCCCCcHHHHHHHHHHhCC
Q 006117 68 LVGVAGPSGAGKTVFTEKVLNFMP 91 (660)
Q Consensus 68 IIGI~GpSGSGKSTLak~L~~lLp 91 (660)
+|+|+||||||||||++.|.+.++
T Consensus 21 ~ivl~GPSGaGKsTL~~~L~~~~~ 44 (197)
T 3ney_A 21 TLVLIGASGVGRSHIKNALLSQNP 44 (197)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHCT
T ss_pred EEEEECcCCCCHHHHHHHHHhhCC
Confidence 999999999999999999999875
No 176
>3tlx_A Adenylate kinase 2; structural genomics, structural genomics consortium, SGC, RO fold, transferase, ATP binding, phosphorylation; HET: ADP ATP AMP; 2.75A {Plasmodium falciparum}
Probab=97.50 E-value=6.7e-05 Score=75.21 Aligned_cols=37 Identities=11% Similarity=0.027 Sum_probs=29.8
Q ss_pred CcceEEEEECCCCCcHHHHHHHHHHhCCCceEEEecCc
Q 006117 64 HGIILVGVAGPSGAGKTVFTEKVLNFMPSIAVITMDNY 101 (660)
Q Consensus 64 e~~~IIGI~GpSGSGKSTLak~L~~lLp~~g~I~lDg~ 101 (660)
.++.+|+|.|++||||||+++.|+..+ +...++.|+.
T Consensus 27 ~~~~~I~l~G~~GsGKsT~a~~L~~~~-g~~~is~~~~ 63 (243)
T 3tlx_A 27 KPDGRYIFLGAPGSGKGTQSLNLKKSH-CYCHLSTGDL 63 (243)
T ss_dssp SCCEEEEEECCTTSSHHHHHHHHHHHH-CCEEEEHHHH
T ss_pred CCCcEEEEECCCCCCHHHHHHHHHHHh-CCeEEecHHH
Confidence 356799999999999999999999876 4456666553
No 177
>3hdt_A Putative kinase; structura genomics, PSI-2, protein structure initiative, midwest CENT structural genomics, MCSG; 2.79A {Clostridium symbiosum atcc 14940}
Probab=97.49 E-value=4.4e-05 Score=76.44 Aligned_cols=25 Identities=12% Similarity=0.327 Sum_probs=23.2
Q ss_pred ceEEEEECCCCCcHHHHHHHHHHhC
Q 006117 66 IILVGVAGPSGAGKTVFTEKVLNFM 90 (660)
Q Consensus 66 ~~IIGI~GpSGSGKSTLak~L~~lL 90 (660)
..+|+|.|+.||||||+++.|++.+
T Consensus 14 ~~iI~i~g~~gsGk~~i~~~la~~l 38 (223)
T 3hdt_A 14 NLIITIEREYGSGGRIVGKKLAEEL 38 (223)
T ss_dssp CEEEEEEECTTSCHHHHHHHHHHHH
T ss_pred CeEEEEeCCCCCCHHHHHHHHHHHc
Confidence 3599999999999999999999987
No 178
>3fb4_A Adenylate kinase; psychrophIle, phosphotransferase, ATP-binding, nucleotide-binding, transferase; HET: AP5; 2.00A {Marinibacillus marinus}
Probab=97.47 E-value=3e-05 Score=75.15 Aligned_cols=33 Identities=24% Similarity=0.367 Sum_probs=26.8
Q ss_pred EEEEECCCCCcHHHHHHHHHHhCCCceEEEecCc
Q 006117 68 LVGVAGPSGAGKTVFTEKVLNFMPSIAVITMDNY 101 (660)
Q Consensus 68 IIGI~GpSGSGKSTLak~L~~lLp~~g~I~lDg~ 101 (660)
.|+|+|++||||||+++.|+..+ +...++.|+.
T Consensus 2 ~I~l~G~~GsGKsT~a~~L~~~~-~~~~i~~d~~ 34 (216)
T 3fb4_A 2 NIVLMGLPGAGKGTQAEQIIEKY-EIPHISTGDM 34 (216)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHH-CCCEEEHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHh-CCcEeeHHHH
Confidence 58899999999999999998876 3446666654
No 179
>1t9h_A YLOQ, probable GTPase ENGC; N-terminal beta-barrel domain with oligonucleotide binding fold, central GTP binding domain; 1.60A {Bacillus subtilis} SCOP: b.40.4.5 c.37.1.8
Probab=97.47 E-value=2.3e-05 Score=82.32 Aligned_cols=59 Identities=15% Similarity=0.137 Sum_probs=35.1
Q ss_pred eeeccCCcceEEEEECCCCCcHHHHHHHHHHhC-CCceEEEe---cCccccc------ccccccCCCCCCCc
Q 006117 58 LLAQKNHGIILVGVAGPSGAGKTVFTEKVLNFM-PSIAVITM---DNYNDSS------RIIDGNFDDPRLTD 119 (660)
Q Consensus 58 l~i~~ge~~~IIGI~GpSGSGKSTLak~L~~lL-p~~g~I~l---Dg~~~~~------~~i~~vfq~p~l~d 119 (660)
+.+.+|+ +++|+|+||||||||+++|.+.. +..|.|.. +|..... ...++++|.|.+..
T Consensus 168 ~~~~~G~---~~~lvG~sG~GKSTLln~L~g~~~~~~G~I~~~~~~G~~tt~~~~~~~~~~g~v~dtpg~~~ 236 (307)
T 1t9h_A 168 IPHFQDK---TTVFAGQSGVGKSSLLNAISPELGLRTNEISEHLGRGKHTTRHVELIHTSGGLVADTPGFSS 236 (307)
T ss_dssp GGGGTTS---EEEEEESHHHHHHHHHHHHCC-------------------CCCCCEEEETTEEEESSCSCSS
T ss_pred HhhcCCC---EEEEECCCCCCHHHHHHHhcccccccccceeeecCCCcccccHHHHhhcCCEEEecCCCccc
Confidence 4566777 99999999999999999999987 67888887 5543221 11578899987654
No 180
>2i3b_A HCR-ntpase, human cancer-related ntpase; AAA, rossmann, hydrolase; NMR {Homo sapiens} SCOP: c.37.1.11
Probab=97.42 E-value=2.3e-05 Score=76.38 Aligned_cols=46 Identities=26% Similarity=0.394 Sum_probs=35.1
Q ss_pred EEEEECCCCCcHHHHHHHHHHhCCCceEEEecCcccc-----cccccccCCC
Q 006117 68 LVGVAGPSGAGKTVFTEKVLNFMPSIAVITMDNYNDS-----SRIIDGNFDD 114 (660)
Q Consensus 68 IIGI~GpSGSGKSTLak~L~~lLp~~g~I~lDg~~~~-----~~~i~~vfq~ 114 (660)
+++|+|+||||||||+++|++.++..| |.+|++... .+.+++++|+
T Consensus 3 ~i~i~G~nG~GKTTll~~l~g~~~~~G-i~~~g~~~~~~~~~~~~ig~~~~~ 53 (189)
T 2i3b_A 3 HVFLTGPPGVGKTTLIHKASEVLKSSG-VPVDGFYTEEVRQGGRRIGFDVVT 53 (189)
T ss_dssp CEEEESCCSSCHHHHHHHHHHHHHHTT-CCCEEEECCEEETTSSEEEEEEEE
T ss_pred EEEEECCCCChHHHHHHHHHhhcccCC-EEEcCEecchhHhhhceEEEEEEe
Confidence 799999999999999999999985556 778876432 1334555554
No 181
>2ocp_A DGK, deoxyguanosine kinase; protein-nucleotide complex, transferase; HET: DTP; 2.80A {Homo sapiens} SCOP: c.37.1.1
Probab=97.42 E-value=1.6e-05 Score=79.09 Aligned_cols=28 Identities=18% Similarity=0.298 Sum_probs=24.9
Q ss_pred ceEEEEECCCCCcHHHHHHHHHHhCCCc
Q 006117 66 IILVGVAGPSGAGKTVFTEKVLNFMPSI 93 (660)
Q Consensus 66 ~~IIGI~GpSGSGKSTLak~L~~lLp~~ 93 (660)
+.+|+|.|+.||||||+++.|+..+++.
T Consensus 2 ~~~i~~~G~~g~GKtt~~~~l~~~l~~~ 29 (241)
T 2ocp_A 2 PRRLSIEGNIAVGKSTFVKLLTKTYPEW 29 (241)
T ss_dssp CEEEEEEECTTSSHHHHHHHHHHHCTTS
T ss_pred CeEEEEEcCCCCCHHHHHHHHHHHcCCC
Confidence 5689999999999999999999998433
No 182
>1cr0_A DNA primase/helicase; RECA-type protein fold, transferase; HET: DNA; 2.30A {Enterobacteria phage T7} SCOP: c.37.1.11 PDB: 1cr1_A* 1cr2_A* 1cr4_A* 1e0j_A* 1e0k_A*
Probab=97.39 E-value=3e-05 Score=79.31 Aligned_cols=40 Identities=23% Similarity=0.239 Sum_probs=36.1
Q ss_pred EEEecceeeccCCcceEEEEECCCCCcHHHHHHHHHHhC-CCce
Q 006117 52 VIRACQLLAQKNHGIILVGVAGPSGAGKTVFTEKVLNFM-PSIA 94 (660)
Q Consensus 52 vL~~Isl~i~~ge~~~IIGI~GpSGSGKSTLak~L~~lL-p~~g 94 (660)
+|+++++.+++|+ +++|+|+||||||||++.|++.+ +..|
T Consensus 24 ~Ld~i~~~l~~G~---~~~i~G~~G~GKTTl~~~ia~~~~~~~G 64 (296)
T 1cr0_A 24 GINDKTLGARGGE---VIMVTSGSGMGKSTFVRQQALQWGTAMG 64 (296)
T ss_dssp THHHHHCSBCTTC---EEEEEESTTSSHHHHHHHHHHHHHHTSC
T ss_pred HHHHHhcCCCCCe---EEEEEeCCCCCHHHHHHHHHHHHHHHcC
Confidence 5899999999999 99999999999999999999997 4444
No 183
>2f1r_A Molybdopterin-guanine dinucleotide biosynthesis protein B (MOBB); structural genomics, PSI, protein structure initiative; 2.10A {Archaeoglobus fulgidus}
Probab=97.32 E-value=5.3e-05 Score=72.81 Aligned_cols=36 Identities=19% Similarity=0.489 Sum_probs=29.4
Q ss_pred eEEEEECCCCCcHHHHHHHHHHhC-CC---ceEEEecCcc
Q 006117 67 ILVGVAGPSGAGKTVFTEKVLNFM-PS---IAVITMDNYN 102 (660)
Q Consensus 67 ~IIGI~GpSGSGKSTLak~L~~lL-p~---~g~I~lDg~~ 102 (660)
.+++|+|+||||||||++.|.+++ |. .|.|.+|+..
T Consensus 3 ~~v~IvG~SGsGKSTL~~~L~~~~~~~g~~~G~I~~dg~~ 42 (171)
T 2f1r_A 3 LILSIVGTSDSGKTTLITRMMPILRERGLRVAVVKRHAHG 42 (171)
T ss_dssp CEEEEEESCHHHHHHHHHHHHHHHHHTTCCEEEEEC----
T ss_pred eEEEEECCCCCCHHHHHHHHHHHhhhcCCceEEEEEcCcc
Confidence 489999999999999999999998 55 8999998764
No 184
>1aky_A Adenylate kinase; ATP:AMP phosphotransferase, myokinase, transferase (phosphotransferase); HET: AP5; 1.63A {Saccharomyces cerevisiae} SCOP: c.37.1.1 g.41.2.1 PDB: 2aky_A* 3aky_A* 1dvr_A*
Probab=97.31 E-value=0.00016 Score=70.60 Aligned_cols=35 Identities=23% Similarity=0.322 Sum_probs=29.0
Q ss_pred ceEEEEECCCCCcHHHHHHHHHHhCCCceEEEecCc
Q 006117 66 IILVGVAGPSGAGKTVFTEKVLNFMPSIAVITMDNY 101 (660)
Q Consensus 66 ~~IIGI~GpSGSGKSTLak~L~~lLp~~g~I~lDg~ 101 (660)
+.+|.|.|++||||||+++.|+..+ +...++.|+.
T Consensus 4 ~~~I~l~G~~GsGKsT~a~~La~~l-~~~~i~~d~~ 38 (220)
T 1aky_A 4 SIRMVLIGPPGAGKGTQAPNLQERF-HAAHLATGDM 38 (220)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHHH-CCEEEEHHHH
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHc-CceEEehhHH
Confidence 4589999999999999999999987 3456776654
No 185
>2ewv_A Twitching motility protein PILT; pilus retraction motor, ATPase, hexameric PILT, protein TRAN; HET: ADP; 2.80A {Aquifex aeolicus} PDB: 2eww_A* 2gsz_A*
Probab=97.29 E-value=8.5e-05 Score=79.61 Aligned_cols=38 Identities=24% Similarity=0.426 Sum_probs=31.5
Q ss_pred eccCCcceEEEEECCCCCcHHHHHHHHHHhC-CC-ceEEEecC
Q 006117 60 AQKNHGIILVGVAGPSGAGKTVFTEKVLNFM-PS-IAVITMDN 100 (660)
Q Consensus 60 i~~ge~~~IIGI~GpSGSGKSTLak~L~~lL-p~-~g~I~lDg 100 (660)
+++|+ +++|+|||||||||++++|++++ |. .|.|...+
T Consensus 133 ~~~g~---~i~ivG~~GsGKTTll~~l~~~~~~~~~g~I~~~e 172 (372)
T 2ewv_A 133 HRKMG---LILVTGPTGSGKSTTIASMIDYINQTKSYHIITIE 172 (372)
T ss_dssp TSSSE---EEEEECSSSSSHHHHHHHHHHHHHHHSCCEEEEEE
T ss_pred hcCCC---EEEEECCCCCCHHHHHHHHHhhcCcCCCcEEEEec
Confidence 56677 99999999999999999999998 44 67775543
No 186
>2rcn_A Probable GTPase ENGC; YJEQ, circularly permuted, GTP-binding, hydrolase, nucleotide-binding; HET: GDP; 2.25A {Salmonella typhimurium} PDB: 2ykr_W 4a2i_V
Probab=97.28 E-value=0.00012 Score=78.57 Aligned_cols=68 Identities=13% Similarity=0.105 Sum_probs=45.5
Q ss_pred EecceeeccCCcceEEEEECCCCCcHHHHHHHHHHhC--CCceEEEec-Cccc---ccccccccCCCCCCCchhhHHH
Q 006117 54 RACQLLAQKNHGIILVGVAGPSGAGKTVFTEKVLNFM--PSIAVITMD-NYND---SSRIIDGNFDDPRLTDYDTLLE 125 (660)
Q Consensus 54 ~~Isl~i~~ge~~~IIGI~GpSGSGKSTLak~L~~lL--p~~g~I~lD-g~~~---~~~~i~~vfq~p~l~d~~tl~e 125 (660)
+++++.. +|+ +++|+|+||||||||+++|++.. +..|.|..+ |... ....+++++|++.++|..++.+
T Consensus 207 ~~L~~~~-~G~---~~~lvG~sG~GKSTLln~L~g~~~~~~~G~I~~~~G~g~~tt~~~~i~~v~q~~~l~dtpgv~e 280 (358)
T 2rcn_A 207 KPLEEAL-TGR---ISIFAGQSGVGKSSLLNALLGLQNEILTNDVSNVSGLGQHTTTAARLYHFPHGGDVIDSPGVRE 280 (358)
T ss_dssp HHHHHHH-TTS---EEEEECCTTSSHHHHHHHHHCCSSCCCCC-------------CCCEEEECTTSCEEEECHHHHT
T ss_pred HHHHHhc-CCC---EEEEECCCCccHHHHHHHHhccccccccCCccccCCCCccceEEEEEEEECCCCEecCcccHHH
Confidence 4555543 566 99999999999999999999986 567888876 4321 2235677888888888777765
No 187
>1kag_A SKI, shikimate kinase I; transferase, structural genomics, PSI, protein structure initiative; 2.05A {Escherichia coli} SCOP: c.37.1.2
Probab=97.25 E-value=0.00014 Score=67.64 Aligned_cols=24 Identities=25% Similarity=0.429 Sum_probs=22.7
Q ss_pred eEEEEECCCCCcHHHHHHHHHHhC
Q 006117 67 ILVGVAGPSGAGKTVFTEKVLNFM 90 (660)
Q Consensus 67 ~IIGI~GpSGSGKSTLak~L~~lL 90 (660)
.+|+|+|++||||||+++.|++.+
T Consensus 5 ~~i~l~G~~GsGKSTl~~~La~~l 28 (173)
T 1kag_A 5 RNIFLVGPMGAGKSTIGRQLAQQL 28 (173)
T ss_dssp CCEEEECCTTSCHHHHHHHHHHHT
T ss_pred CeEEEECCCCCCHHHHHHHHHHHh
Confidence 389999999999999999999988
No 188
>1ye8_A Protein THEP1, hypothetical UPF0334 kinase-like protein AQ_1292; mixed alpha-beta protein, rossman fold, signaling protein, transferase; 1.40A {Aquifex aeolicus} SCOP: c.37.1.11
Probab=97.22 E-value=0.00013 Score=70.15 Aligned_cols=23 Identities=26% Similarity=0.544 Sum_probs=22.0
Q ss_pred EEEEECCCCCcHHHHHHHHHHhC
Q 006117 68 LVGVAGPSGAGKTVFTEKVLNFM 90 (660)
Q Consensus 68 IIGI~GpSGSGKSTLak~L~~lL 90 (660)
.++|+||||||||||+++|++.+
T Consensus 2 ~i~l~G~nGsGKTTLl~~l~g~l 24 (178)
T 1ye8_A 2 KIIITGEPGVGKTTLVKKIVERL 24 (178)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHh
Confidence 68999999999999999999997
No 189
>1lw7_A Transcriptional regulator NADR; NMN, NMN adenylyl transferase, ribosylnicotinamide KINA transferase; HET: NAD; 2.90A {Haemophilus influenzae} SCOP: c.26.1.3 c.37.1.1
Probab=97.20 E-value=0.00013 Score=77.48 Aligned_cols=38 Identities=18% Similarity=0.263 Sum_probs=33.2
Q ss_pred EEecceeecc--CCcceEEEEECCCCCcHHHHHHHHHHhC-CCc
Q 006117 53 IRACQLLAQK--NHGIILVGVAGPSGAGKTVFTEKVLNFM-PSI 93 (660)
Q Consensus 53 L~~Isl~i~~--ge~~~IIGI~GpSGSGKSTLak~L~~lL-p~~ 93 (660)
.+.|++.+.+ ++ .++|+|+||||||||+++|++++ |..
T Consensus 158 ~~~v~~~v~~~lg~---k~~IvG~nGsGKSTLlk~L~gl~~~~~ 198 (365)
T 1lw7_A 158 WKFIPKEARPFFAK---TVAILGGESSGKSVLVNKLAAVFNTTS 198 (365)
T ss_dssp GGGSCTTTGGGTCE---EEEEECCTTSHHHHHHHHHHHHTTCEE
T ss_pred hhhCCHHHHHhhhC---eEEEECCCCCCHHHHHHHHHHHhCCCc
Confidence 3567888888 88 99999999999999999999998 544
No 190
>2x8a_A Nuclear valosin-containing protein-like; nuclear protein; 2.60A {Homo sapiens}
Probab=97.15 E-value=0.00015 Score=74.23 Aligned_cols=46 Identities=28% Similarity=0.410 Sum_probs=38.3
Q ss_pred EEEEecceeeccCCcceEEEEECCCCCcHHHHHHHHHHhCCCceEEEecCcc
Q 006117 51 IVIRACQLLAQKNHGIILVGVAGPSGAGKTVFTEKVLNFMPSIAVITMDNYN 102 (660)
Q Consensus 51 ~vL~~Isl~i~~ge~~~IIGI~GpSGSGKSTLak~L~~lLp~~g~I~lDg~~ 102 (660)
.+++++++.+++| ++|.||+|||||||+++|++.+ ..+.+.+++..
T Consensus 34 ~~l~~~~l~~~~G-----vlL~Gp~GtGKTtLakala~~~-~~~~i~i~g~~ 79 (274)
T 2x8a_A 34 DQFKALGLVTPAG-----VLLAGPPGCGKTLLAKAVANES-GLNFISVKGPE 79 (274)
T ss_dssp HHHHHTTCCCCSE-----EEEESSTTSCHHHHHHHHHHHT-TCEEEEEETTT
T ss_pred HHHHHcCCCCCCe-----EEEECCCCCcHHHHHHHHHHHc-CCCEEEEEcHH
Confidence 3578888888765 8999999999999999999998 34788887753
No 191
>1qhl_A Protein (cell division protein MUKB); SMC, chromosome partitioning; 2.20A {Escherichia coli} SCOP: c.37.1.12
Probab=97.11 E-value=2.3e-05 Score=78.87 Aligned_cols=35 Identities=20% Similarity=0.468 Sum_probs=27.3
Q ss_pred EEEEECCCCCcHHHHHHHHHHhC-CCceEEEecCcc
Q 006117 68 LVGVAGPSGAGKTVFTEKVLNFM-PSIAVITMDNYN 102 (660)
Q Consensus 68 IIGI~GpSGSGKSTLak~L~~lL-p~~g~I~lDg~~ 102 (660)
+++|+||||||||||+++|++.+ |+.|.|.+++..
T Consensus 29 ~~~i~GpnGsGKSTll~~i~g~~~~~~G~i~~~g~~ 64 (227)
T 1qhl_A 29 VTTLSGGNGAGKSTTMAAFVTALIPDLTLLHFRNTT 64 (227)
T ss_dssp HHHHHSCCSHHHHHHHHHHHHHHSCCTTTC------
T ss_pred EEEEECCCCCCHHHHHHHHhcccccCCCeEEECCEE
Confidence 88999999999999999999998 788888877754
No 192
>1zu4_A FTSY; GTPase, signal recognition particle, SRP, receptor, protein transport; 1.95A {Mycoplasma mycoides} PDB: 1zu5_A
Probab=97.07 E-value=0.00057 Score=71.91 Aligned_cols=42 Identities=17% Similarity=0.215 Sum_probs=33.3
Q ss_pred EecceeeccCCcceEEEEECCCCCcHHHHHHHHHHhC-CCceEEEe
Q 006117 54 RACQLLAQKNHGIILVGVAGPSGAGKTVFTEKVLNFM-PSIAVITM 98 (660)
Q Consensus 54 ~~Isl~i~~ge~~~IIGI~GpSGSGKSTLak~L~~lL-p~~g~I~l 98 (660)
++++|...+++ +|+|+|++|+||||++..|++.+ +..+.+.+
T Consensus 96 ~~l~~~~~~~~---vI~ivG~~G~GKTT~~~~LA~~l~~~g~kVll 138 (320)
T 1zu4_A 96 YRIDFKENRLN---IFMLVGVNGTGKTTSLAKMANYYAELGYKVLI 138 (320)
T ss_dssp CCCCCCTTSCE---EEEEESSTTSSHHHHHHHHHHHHHHTTCCEEE
T ss_pred cCccccCCCCe---EEEEECCCCCCHHHHHHHHHHHHHHCCCeEEE
Confidence 67888766666 99999999999999999999987 33333333
No 193
>2w0m_A SSO2452; RECA, SSPF, unknown FUN; 2.0A {Sulfolobus solfataricus P2}
Probab=97.05 E-value=0.00014 Score=70.14 Aligned_cols=36 Identities=17% Similarity=0.261 Sum_probs=30.9
Q ss_pred EEEecce-eeccCCcceEEEEECCCCCcHHHHHHHHHHhC
Q 006117 52 VIRACQL-LAQKNHGIILVGVAGPSGAGKTVFTEKVLNFM 90 (660)
Q Consensus 52 vL~~Isl-~i~~ge~~~IIGI~GpSGSGKSTLak~L~~lL 90 (660)
.|+++.. .+++|+ +++|+|+||||||||++.|++.+
T Consensus 11 ~Ld~~~~ggi~~G~---~~~i~G~~GsGKTtl~~~l~~~~ 47 (235)
T 2w0m_A 11 DFDKLIQGGIPQGF---FIALTGEPGTGKTIFSLHFIAKG 47 (235)
T ss_dssp HHHGGGTTSEETTC---EEEEECSTTSSHHHHHHHHHHHH
T ss_pred HHHHHhcCCCcCCC---EEEEEcCCCCCHHHHHHHHHHHH
Confidence 3566665 678898 99999999999999999999776
No 194
>3be4_A Adenylate kinase; malaria, cryptosporidium parvum nonprotein inhibitors, nucleotide-binding, transferase; HET: AP5; 1.60A {Cryptosporidium parvum iowa II}
Probab=97.02 E-value=0.0005 Score=67.18 Aligned_cols=35 Identities=17% Similarity=0.183 Sum_probs=28.9
Q ss_pred ceEEEEECCCCCcHHHHHHHHHHhCCCceEEEecCc
Q 006117 66 IILVGVAGPSGAGKTVFTEKVLNFMPSIAVITMDNY 101 (660)
Q Consensus 66 ~~IIGI~GpSGSGKSTLak~L~~lLp~~g~I~lDg~ 101 (660)
+..|.|.|++||||||+++.|+..+ +...++.|+.
T Consensus 5 ~~~I~l~G~~GsGKsT~a~~La~~l-~~~~i~~d~l 39 (217)
T 3be4_A 5 KHNLILIGAPGSGKGTQCEFIKKEY-GLAHLSTGDM 39 (217)
T ss_dssp CCEEEEEECTTSSHHHHHHHHHHHH-CCEEEEHHHH
T ss_pred ceEEEEECCCCCCHHHHHHHHHHHh-CceEEehhHH
Confidence 4589999999999999999999987 4556776654
No 195
>3ec2_A DNA replication protein DNAC; helicase loader, replication initiation factor, ATP-binding, nucleotide-binding; HET: DNA ADP; 2.70A {Aquifex aeolicus} PDB: 3ecc_A*
Probab=96.99 E-value=0.00029 Score=66.43 Aligned_cols=30 Identities=20% Similarity=0.328 Sum_probs=26.4
Q ss_pred eeeccCCcceEEEEECCCCCcHHHHHHHHHHhC
Q 006117 58 LLAQKNHGIILVGVAGPSGAGKTVFTEKVLNFM 90 (660)
Q Consensus 58 l~i~~ge~~~IIGI~GpSGSGKSTLak~L~~lL 90 (660)
+.+++|+ .++|.||+|+|||||+++|++.+
T Consensus 33 ~~~~~g~---~~~l~G~~G~GKTtL~~~i~~~~ 62 (180)
T 3ec2_A 33 FNPEEGK---GLTFVGSPGVGKTHLAVATLKAI 62 (180)
T ss_dssp CCGGGCC---EEEECCSSSSSHHHHHHHHHHHH
T ss_pred ccccCCC---EEEEECCCCCCHHHHHHHHHHHH
Confidence 4456677 99999999999999999999987
No 196
>3jvv_A Twitching mobility protein; hexameric P-loop ATPase, secretion ATPase, ATP-binding, FIMB nucleotide-binding, transport; HET: ACP CIT; 2.60A {Pseudomonas aeruginosa} PDB: 3jvu_A*
Probab=96.99 E-value=0.00023 Score=76.06 Aligned_cols=29 Identities=31% Similarity=0.551 Sum_probs=25.8
Q ss_pred eeccCCcceEEEEECCCCCcHHHHHHHHHHhC
Q 006117 59 LAQKNHGIILVGVAGPSGAGKTVFTEKVLNFM 90 (660)
Q Consensus 59 ~i~~ge~~~IIGI~GpSGSGKSTLak~L~~lL 90 (660)
...+++ +++|+|||||||||++++|.+.+
T Consensus 119 ~~~~~g---~i~I~GptGSGKTTlL~~l~g~~ 147 (356)
T 3jvv_A 119 SDVPRG---LVLVTGPTGSGKSTTLAAMLDYL 147 (356)
T ss_dssp HHCSSE---EEEEECSTTSCHHHHHHHHHHHH
T ss_pred HhCCCC---EEEEECCCCCCHHHHHHHHHhcc
Confidence 445566 99999999999999999999998
No 197
>2pez_A Bifunctional 3'-phosphoadenosine 5'- phosphosulfate synthetase 1 (PAPS synthetase...; NMP-kinase fold, protein in complex with nucleic acid; HET: GGZ DAT; 1.40A {Homo sapiens} PDB: 2pey_A* 2ax4_A*
Probab=96.99 E-value=0.00026 Score=66.71 Aligned_cols=37 Identities=32% Similarity=0.380 Sum_probs=29.4
Q ss_pred ceEEEEECCCCCcHHHHHHHHHHhC-C-CceEEEecCcc
Q 006117 66 IILVGVAGPSGAGKTVFTEKVLNFM-P-SIAVITMDNYN 102 (660)
Q Consensus 66 ~~IIGI~GpSGSGKSTLak~L~~lL-p-~~g~I~lDg~~ 102 (660)
..+|+|+|++||||||+++.|++.+ + +...+.+|+..
T Consensus 5 g~~i~l~G~~GsGKST~~~~L~~~l~~~g~~~i~~d~~~ 43 (179)
T 2pez_A 5 GCTVWLTGLSGAGKTTVSMALEEYLVCHGIPCYTLDGDN 43 (179)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHHHHHHTTCCEEEEEHHH
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHHhhCCCcEEEECChH
Confidence 3489999999999999999999987 2 33377777643
No 198
>1pzn_A RAD51, DNA repair and recombination protein RAD51, RADA; heptameric ring, heptamer, ring, oligomer, RAD51 polymerizat motif; HET: DNA; 2.85A {Pyrococcus furiosus} SCOP: a.60.4.1 c.37.1.11
Probab=96.98 E-value=0.00019 Score=76.16 Aligned_cols=63 Identities=19% Similarity=0.181 Sum_probs=45.3
Q ss_pred EEec-ceeeccCCcceEEEEECCCCCcHHHHHHHHHHhC--C-Cc----eE-EEecCcccc-cccccccCCCCCCC
Q 006117 53 IRAC-QLLAQKNHGIILVGVAGPSGAGKTVFTEKVLNFM--P-SI----AV-ITMDNYNDS-SRIIDGNFDDPRLT 118 (660)
Q Consensus 53 L~~I-sl~i~~ge~~~IIGI~GpSGSGKSTLak~L~~lL--p-~~----g~-I~lDg~~~~-~~~i~~vfq~p~l~ 118 (660)
|+.+ .+.+++|+ +++|+|++|||||||++.|++.. + .. |. |.+|+.... ...+.+++|.+.++
T Consensus 120 LD~lL~ggi~~G~---i~~I~G~~GsGKTTL~~~l~~~~~~~~~~Gg~~G~vi~i~~e~~~~~~~i~~i~q~~~~~ 192 (349)
T 1pzn_A 120 LDKLLGGGIETQA---ITEVFGEFGSGKTQLAHTLAVMVQLPPEEGGLNGSVIWIDTENTFRPERIREIAQNRGLD 192 (349)
T ss_dssp HHHHHTSSEESSE---EEEEEESTTSSHHHHHHHHHHHTTSCGGGTSCSCEEEEEESSSCCCHHHHHHHHHTTTCC
T ss_pred HHHHhcCCCCCCe---EEEEECCCCCCHHHHHHHHHHHhccchhcCCCCCeEEEEeCCCCCCHHHHHHHHHHcCCC
Confidence 4443 56788899 99999999999999999999986 3 22 45 888876432 23455566665544
No 199
>1e4v_A Adenylate kinase; transferase(phosphotransferase); HET: AP5; 1.85A {Escherichia coli} SCOP: c.37.1.1 g.41.2.1 PDB: 1e4y_A* 1ake_A* 1ank_A* 2eck_A* 3hpq_A* 4ake_A 3hpr_A*
Probab=96.94 E-value=0.00058 Score=66.41 Aligned_cols=33 Identities=18% Similarity=0.224 Sum_probs=27.1
Q ss_pred EEEEECCCCCcHHHHHHHHHHhCCCceEEEecCc
Q 006117 68 LVGVAGPSGAGKTVFTEKVLNFMPSIAVITMDNY 101 (660)
Q Consensus 68 IIGI~GpSGSGKSTLak~L~~lLp~~g~I~lDg~ 101 (660)
.|+|.|++||||||+++.|+..+ +...++.|+.
T Consensus 2 ~I~l~G~~GsGKsT~a~~L~~~~-g~~~i~~d~~ 34 (214)
T 1e4v_A 2 RIILLGAPVAGKGTQAQFIMEKY-GIPQISTGDM 34 (214)
T ss_dssp EEEEEESTTSSHHHHHHHHHHHH-CCCEEEHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHh-CCeEEeHHHH
Confidence 58999999999999999999976 3456777654
No 200
>3kta_A Chromosome segregation protein SMC; structural maintenance of chromosomes, ABC ATPase, CFTR adenylate kinase, AP5A, transferase; HET: AP5; 1.63A {Pyrococcus furiosus} PDB: 1xex_A* 1xew_X*
Probab=96.93 E-value=0.00048 Score=64.82 Aligned_cols=33 Identities=18% Similarity=0.427 Sum_probs=27.5
Q ss_pred EecceeeccCCcceEEEEECCCCCcHHHHHHHHHHhC
Q 006117 54 RACQLLAQKNHGIILVGVAGPSGAGKTVFTEKVLNFM 90 (660)
Q Consensus 54 ~~Isl~i~~ge~~~IIGI~GpSGSGKSTLak~L~~lL 90 (660)
+++++.+.+| +.+|+|+|||||||++++|...+
T Consensus 18 ~~~~~~~~~g----~~~i~G~NGsGKStll~ai~~~l 50 (182)
T 3kta_A 18 KKVVIPFSKG----FTAIVGANGSGKSNIGDAILFVL 50 (182)
T ss_dssp SCEEEECCSS----EEEEEECTTSSHHHHHHHHHHHT
T ss_pred ccEEEecCCC----cEEEECCCCCCHHHHHHHHHHHH
Confidence 4556666543 89999999999999999999988
No 201
>1n0w_A DNA repair protein RAD51 homolog 1; DNA repair, homologous recombination, breast cancer susceptibility, RECA-like ATPase, protein complex; HET: DNA MSE; 1.70A {Homo sapiens} SCOP: c.37.1.11
Probab=96.91 E-value=0.00078 Score=65.73 Aligned_cols=40 Identities=15% Similarity=0.212 Sum_probs=33.0
Q ss_pred eccCCcceEEEEECCCCCcHHHHHHHHHHh--CC------CceEEEecCcc
Q 006117 60 AQKNHGIILVGVAGPSGAGKTVFTEKVLNF--MP------SIAVITMDNYN 102 (660)
Q Consensus 60 i~~ge~~~IIGI~GpSGSGKSTLak~L~~l--Lp------~~g~I~lDg~~ 102 (660)
+++|+ +++|+||+|||||||++.|++. ++ +.+.+.+++..
T Consensus 21 i~~G~---~~~i~G~~GsGKTtl~~~l~~~~~~~~~~g~~~~~~~~i~~~~ 68 (243)
T 1n0w_A 21 IETGS---ITEMFGEFRTGKTQICHTLAVTCQLPIDRGGGEGKAMYIDTEG 68 (243)
T ss_dssp EETTS---EEEEECCTTSSHHHHHHHHHHHTTSCGGGTCCSSEEEEEESSS
T ss_pred CcCCe---EEEEECCCCCcHHHHHHHHHHHHhCchhcCCCCCeEEEEECCC
Confidence 67888 9999999999999999999995 32 46777777653
No 202
>1ixz_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 2.20A {Thermus thermophilus} SCOP: c.37.1.20 PDB: 1iy0_A* 1iy1_A*
Probab=96.90 E-value=0.00037 Score=69.35 Aligned_cols=45 Identities=24% Similarity=0.270 Sum_probs=36.9
Q ss_pred EEEEecceeeccCCcceEEEEECCCCCcHHHHHHHHHHhCCCceEEEecCc
Q 006117 51 IVIRACQLLAQKNHGIILVGVAGPSGAGKTVFTEKVLNFMPSIAVITMDNY 101 (660)
Q Consensus 51 ~vL~~Isl~i~~ge~~~IIGI~GpSGSGKSTLak~L~~lLp~~g~I~lDg~ 101 (660)
.+++++++.+++| ++|.||+|+|||||+++|++.+ ..+.+.+++.
T Consensus 39 ~~~~~~~~~~~~g-----~ll~G~~G~GKTtl~~~i~~~~-~~~~i~~~~~ 83 (254)
T 1ixz_A 39 SRFHEMGARIPKG-----VLLVGPPGVGKTHLARAVAGEA-RVPFITASGS 83 (254)
T ss_dssp HHHHHTTCCCCSE-----EEEECCTTSSHHHHHHHHHHHT-TCCEEEEEHH
T ss_pred HHHHHcCCCCCCe-----EEEECCCCCCHHHHHHHHHHHh-CCCEEEeeHH
Confidence 4567788877655 8899999999999999999998 4677777764
No 203
>3thx_B DNA mismatch repair protein MSH3; ABC family ATPase, mismatch recognition, mismatched unpaired DNA binding protein-DNA complex; HET: DNA ADP; 2.70A {Homo sapiens} PDB: 3thw_B* 3thy_B* 3thz_B*
Probab=96.86 E-value=0.00034 Score=83.27 Aligned_cols=38 Identities=18% Similarity=0.267 Sum_probs=34.3
Q ss_pred ceEEEEecceeeccCCcceEEEEECCCCCcHHHHHHHHHHh
Q 006117 49 FFIVIRACQLLAQKNHGIILVGVAGPSGAGKTVFTEKVLNF 89 (660)
Q Consensus 49 ~~~vL~~Isl~i~~ge~~~IIGI~GpSGSGKSTLak~L~~l 89 (660)
...|+++++|.+++|+ +++|+|||||||||+++.++..
T Consensus 659 ~~~V~ndvsl~~~~g~---i~~ItGPNGaGKSTlLr~i~~i 696 (918)
T 3thx_B 659 DQYVPNNTDLSEDSER---VMIITGPNMGGKSSYIKQVALI 696 (918)
T ss_dssp SSSCCEEEEECTTSCC---EEEEESCCCHHHHHHHHHHHHH
T ss_pred CceecccccccCCCCe---EEEEECCCCCchHHHHHHHHHH
Confidence 3457899999999999 9999999999999999998765
No 204
>1wb9_A DNA mismatch repair protein MUTS; DNA-binding, ATP-binding, DNA binding, DNA repair, mismatch recognition; HET: DNA ADP; 2.10A {Escherichia coli} SCOP: a.113.1.1 c.37.1.12 c.55.6.1 d.75.2.1 PDB: 1wbb_A* 1e3m_A* 1oh5_A* 1oh6_A* 1oh7_A* 1oh8_A* 1w7a_A* 2wtu_A* 1wbd_A* 1ng9_A* 3k0s_A*
Probab=96.86 E-value=0.00049 Score=80.87 Aligned_cols=38 Identities=13% Similarity=0.258 Sum_probs=33.8
Q ss_pred ceEEEEecceeeccCCcceEEEEECCCCCcHHHHHHHHHHhC
Q 006117 49 FFIVIRACQLLAQKNHGIILVGVAGPSGAGKTVFTEKVLNFM 90 (660)
Q Consensus 49 ~~~vL~~Isl~i~~ge~~~IIGI~GpSGSGKSTLak~L~~lL 90 (660)
...++++++|. ++|+ +++|+|||||||||+++.|++..
T Consensus 594 ~~~vlndisl~-~~g~---i~~ItGpNGsGKSTlLr~iagl~ 631 (800)
T 1wb9_A 594 EPFIANPLNLS-PQRR---MLIITGPNMGGKSTYMRQTALIA 631 (800)
T ss_dssp SCCCCEEEEEC-SSSC---EEEEECCTTSSHHHHHHHHHHHH
T ss_pred Cceeeeccccc-CCCc---EEEEECCCCCChHHHHHHHHHHH
Confidence 34578999999 7888 99999999999999999999874
No 205
>1qhx_A CPT, protein (chloramphenicol phosphotransferase); kinase, antibiotic resistance, phosphorylation, mononucleoti binding fold; HET: ATP; 2.50A {Streptomyces venezuelae} SCOP: c.37.1.3 PDB: 1grr_A* 1grq_A 1qhs_A* 1qhn_A* 1qhy_A*
Probab=96.85 E-value=0.00083 Score=62.70 Aligned_cols=35 Identities=20% Similarity=0.317 Sum_probs=27.1
Q ss_pred eEEEEECCCCCcHHHHHHHHHHhCCC-ceEEEecCc
Q 006117 67 ILVGVAGPSGAGKTVFTEKVLNFMPS-IAVITMDNY 101 (660)
Q Consensus 67 ~IIGI~GpSGSGKSTLak~L~~lLp~-~g~I~lDg~ 101 (660)
.+|.|+|++||||||+++.|+..++. .-.++.|.+
T Consensus 4 ~~i~l~G~~GsGKST~a~~La~~l~~~~~~~~~D~~ 39 (178)
T 1qhx_A 4 RMIILNGGSSAGKSGIVRCLQSVLPEPWLAFGVDSL 39 (178)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHHSSSCEEEEEHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHhcCCCeEEeccchH
Confidence 48999999999999999999999842 222345554
No 206
>2ze6_A Isopentenyl transferase; crown GALL tumor, cytokinin biosynthesis; HET: DST AMP; 2.10A {Agrobacterium tumefaciens} PDB: 2ze5_A* 2ze7_A* 2ze8_A
Probab=96.82 E-value=0.00075 Score=68.11 Aligned_cols=34 Identities=24% Similarity=0.367 Sum_probs=29.5
Q ss_pred eEEEEECCCCCcHHHHHHHHHHhCCCceEEEecCc
Q 006117 67 ILVGVAGPSGAGKTVFTEKVLNFMPSIAVITMDNY 101 (660)
Q Consensus 67 ~IIGI~GpSGSGKSTLak~L~~lLp~~g~I~lDg~ 101 (660)
.+|.|+||+||||||+++.|++.+ +...++.|.+
T Consensus 2 ~li~I~G~~GSGKSTla~~La~~~-~~~~i~~D~~ 35 (253)
T 2ze6_A 2 LLHLIYGPTCSGKTDMAIQIAQET-GWPVVALDRV 35 (253)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHHH-CCCEEECCSG
T ss_pred eEEEEECCCCcCHHHHHHHHHhcC-CCeEEeccHH
Confidence 489999999999999999999987 3557888875
No 207
>3zvl_A Bifunctional polynucleotide phosphatase/kinase; hydrolase-transferase complex, base excision repair, BER, non-homologous END-joining, NHEJ; 1.65A {Mus musculus} PDB: 3zvm_A* 3zvn_A* 1yj5_A 3u7e_B* 3u7f_B* 3u7h_B* 3u7g_A*
Probab=96.79 E-value=0.002 Score=69.75 Aligned_cols=34 Identities=26% Similarity=0.303 Sum_probs=26.4
Q ss_pred cceEEEEECCCCCcHHHHHHHHHHhCCCceEEEec
Q 006117 65 GIILVGVAGPSGAGKTVFTEKVLNFMPSIAVITMD 99 (660)
Q Consensus 65 ~~~IIGI~GpSGSGKSTLak~L~~lLp~~g~I~lD 99 (660)
.+.+|.|+|++||||||+++.|+..+ +...|+.|
T Consensus 257 ~~~lIil~G~pGSGKSTla~~L~~~~-~~~~i~~D 290 (416)
T 3zvl_A 257 NPEVVVAVGFPGAGKSTFIQEHLVSA-GYVHVNRD 290 (416)
T ss_dssp SCCEEEEESCTTSSHHHHHHHHTGGG-TCEECCGG
T ss_pred CCEEEEEECCCCCCHHHHHHHHHHhc-CcEEEccc
Confidence 45699999999999999999998876 23344433
No 208
>1iy2_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 3.20A {Thermus thermophilus} SCOP: c.37.1.20
Probab=96.79 E-value=0.0005 Score=69.67 Aligned_cols=45 Identities=24% Similarity=0.270 Sum_probs=36.9
Q ss_pred EEEEecceeeccCCcceEEEEECCCCCcHHHHHHHHHHhCCCceEEEecCc
Q 006117 51 IVIRACQLLAQKNHGIILVGVAGPSGAGKTVFTEKVLNFMPSIAVITMDNY 101 (660)
Q Consensus 51 ~vL~~Isl~i~~ge~~~IIGI~GpSGSGKSTLak~L~~lLp~~g~I~lDg~ 101 (660)
.+++++++.+++| ++|.||+|+|||||+++|++.+ ..+.+.+++.
T Consensus 63 ~~l~~~~~~~~~g-----vll~Gp~GtGKTtl~~~i~~~~-~~~~i~~~~~ 107 (278)
T 1iy2_A 63 SRFHEMGARIPKG-----VLLVGPPGVGKTHLARAVAGEA-RVPFITASGS 107 (278)
T ss_dssp HHHHHTTCCCCCE-----EEEECCTTSSHHHHHHHHHHHT-TCCEEEEEHH
T ss_pred HHHHHcCCCCCCe-----EEEECCCcChHHHHHHHHHHHc-CCCEEEecHH
Confidence 4567788877654 8899999999999999999998 4677777754
No 209
>1svm_A Large T antigen; AAA+ fold, viral protein; HET: ATP; 1.94A {Simian virus 40} SCOP: c.37.1.20 PDB: 1svl_A* 1svo_A 1n25_A 2h1l_A
Probab=96.77 E-value=0.00032 Score=75.60 Aligned_cols=38 Identities=18% Similarity=0.301 Sum_probs=34.8
Q ss_pred eEEEEecceeeccCCcceEEEEECCCCCcHHHHHHHHHHhC
Q 006117 50 FIVIRACQLLAQKNHGIILVGVAGPSGAGKTVFTEKVLNFM 90 (660)
Q Consensus 50 ~~vL~~Isl~i~~ge~~~IIGI~GpSGSGKSTLak~L~~lL 90 (660)
..+++++++.+++|+ +++|.||+|||||||++.|++.+
T Consensus 156 ~~~l~~~~~~i~~~~---~i~l~G~~GsGKSTl~~~l~~~~ 193 (377)
T 1svm_A 156 YDFLKCMVYNIPKKR---YWLFKGPIDSGKTTLAAALLELC 193 (377)
T ss_dssp HHHHHHHHHCCTTCC---EEEEECSTTSSHHHHHHHHHHHH
T ss_pred HHHHHhcccccCCCC---EEEEECCCCCCHHHHHHHHHhhc
Confidence 356888999999999 99999999999999999999986
No 210
>1pui_A ENGB, probable GTP-binding protein ENGB; structural genomics, nysgxrc T16, GTPase, PSI, protein structure initiative; 2.00A {Escherichia coli} SCOP: c.37.1.8
Probab=96.77 E-value=0.00014 Score=69.48 Aligned_cols=44 Identities=27% Similarity=0.213 Sum_probs=30.0
Q ss_pred ceeeeecCceEEEEecceeeccCCcceEEEEECCCCCcHHHHHHHHHHhC
Q 006117 41 DTLSFEKGFFIVIRACQLLAQKNHGIILVGVAGPSGAGKTVFTEKVLNFM 90 (660)
Q Consensus 41 ~~ls~~~g~~~vL~~Isl~i~~ge~~~IIGI~GpSGSGKSTLak~L~~lL 90 (660)
+++++.++ ..++++ |.+.++. .|+|+|++|||||||++.|.+..
T Consensus 7 ~~~~~~~~-~~~l~~--~~~~~~~---~v~lvG~~g~GKSTLl~~l~g~~ 50 (210)
T 1pui_A 7 QQTHFVMS-APDIRH--LPSDTGI---EVAFAGRSNAGKSSALNTLTNQK 50 (210)
T ss_dssp ----CEEE-ESSGGG--SSCSCSE---EEEEEECTTSSHHHHHTTTCCC-
T ss_pred hhhhheee-cCCHhH--CCCCCCc---EEEEECCCCCCHHHHHHHHhCCC
Confidence 33444443 234555 6677776 99999999999999999998754
No 211
>1nij_A Hypothetical protein YJIA; structural genomics, P-loop protein, GTP binding, structure function project, S2F, unknown function; 2.00A {Escherichia coli} SCOP: c.37.1.10 d.237.1.1
Probab=96.76 E-value=0.00036 Score=72.91 Aligned_cols=37 Identities=27% Similarity=0.362 Sum_probs=30.5
Q ss_pred ceEEEEECCCCCcHHHHHHHHHHhC---------CCceEEEecCcc
Q 006117 66 IILVGVAGPSGAGKTVFTEKVLNFM---------PSIAVITMDNYN 102 (660)
Q Consensus 66 ~~IIGI~GpSGSGKSTLak~L~~lL---------p~~g~I~lDg~~ 102 (660)
..+++|+|++|||||||++.|.+.. ++.|.|.+|+..
T Consensus 4 i~v~~i~G~~GaGKTTll~~l~~~~~~~~~aVi~~d~G~i~idg~~ 49 (318)
T 1nij_A 4 IAVTLLTGFLGAGKTTLLRHILNEQHGYKIAVIENEFGEVSVDDQL 49 (318)
T ss_dssp EEEEEEEESSSSSCHHHHHHHHHSCCCCCEEEECSSCCSCCEEEEE
T ss_pred ccEEEEEecCCCCHHHHHHHHHhhcCCCcEEEEEecCcccCccHHH
Confidence 4589999999999999999999874 356777777654
No 212
>1oix_A RAS-related protein RAB-11A; small G protein, intracellular trafficking, GTP-binding, lipoprotein, prenylation, protein transport; HET: GDP; 1.7A {Homo sapiens} SCOP: c.37.1.8 PDB: 1oiw_A* 1oiv_A* 3rwo_B* 3rwm_B*
Probab=96.73 E-value=0.0012 Score=62.78 Aligned_cols=26 Identities=23% Similarity=0.262 Sum_probs=23.5
Q ss_pred cceEEEEECCCCCcHHHHHHHHHHhC
Q 006117 65 GIILVGVAGPSGAGKTVFTEKVLNFM 90 (660)
Q Consensus 65 ~~~IIGI~GpSGSGKSTLak~L~~lL 90 (660)
..+.|+|+|++|||||||++.+.+..
T Consensus 28 ~~~kv~lvG~~g~GKSTLl~~l~~~~ 53 (191)
T 1oix_A 28 YLFKVVLIGDSGVGKSNLLSRFTRNE 53 (191)
T ss_dssp EEEEEEEEECTTSSHHHHHHHHHHSC
T ss_pred cceEEEEECcCCCCHHHHHHHHhcCC
Confidence 35689999999999999999999975
No 213
>1ly1_A Polynucleotide kinase; PNK, phosphatase, transferase; 2.00A {Enterobacteria phage T4} SCOP: c.37.1.1
Probab=96.73 E-value=0.00084 Score=62.32 Aligned_cols=35 Identities=20% Similarity=0.352 Sum_probs=27.0
Q ss_pred ceEEEEECCCCCcHHHHHHHHHH-hCCCceEEEecCc
Q 006117 66 IILVGVAGPSGAGKTVFTEKVLN-FMPSIAVITMDNY 101 (660)
Q Consensus 66 ~~IIGI~GpSGSGKSTLak~L~~-lLp~~g~I~lDg~ 101 (660)
|.+|.|.|++||||||+++.|+. .+ +...|+.|.+
T Consensus 2 ~~~I~i~G~~GsGKST~a~~L~~~~~-~~~~i~~d~~ 37 (181)
T 1ly1_A 2 KKIILTIGCPGSGKSTWAREFIAKNP-GFYNINRDDY 37 (181)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHHHST-TEEEECHHHH
T ss_pred CeEEEEecCCCCCHHHHHHHHHhhcC-CcEEecHHHH
Confidence 45899999999999999999998 44 3445555543
No 214
>1in4_A RUVB, holliday junction DNA helicase RUVB; AAA+-class ATPase, winged-helix domain, ATP hydrolysis, walker A, walker B, sensor 1, sensor 2; HET: ADP; 1.60A {Thermotoga maritima} SCOP: a.4.5.11 c.37.1.20 PDB: 1in5_A* 1in6_A* 1in8_A* 1in7_A* 1j7k_A*
Probab=96.69 E-value=0.00013 Score=76.33 Aligned_cols=48 Identities=25% Similarity=0.204 Sum_probs=37.1
Q ss_pred eeeecCceEEEEecceeeccC----CcceEEEEECCCCCcHHHHHHHHHHhC
Q 006117 43 LSFEKGFFIVIRACQLLAQKN----HGIILVGVAGPSGAGKTVFTEKVLNFM 90 (660)
Q Consensus 43 ls~~~g~~~vL~~Isl~i~~g----e~~~IIGI~GpSGSGKSTLak~L~~lL 90 (660)
++.-.|...+++++++.++.+ +.+-.++|.||+|+|||||+++|++.+
T Consensus 24 l~~~~g~~~~~~~l~~~i~~~~~~~~~~~~~ll~Gp~G~GKTTLa~~ia~~l 75 (334)
T 1in4_A 24 LDEFIGQENVKKKLSLALEAAKMRGEVLDHVLLAGPPGLGKTTLAHIIASEL 75 (334)
T ss_dssp GGGCCSCHHHHHHHHHHHHHHHHHTCCCCCEEEESSTTSSHHHHHHHHHHHH
T ss_pred HHHccCcHHHHHHHHHHHHHHHhcCCCCCeEEEECCCCCcHHHHHHHHHHHh
Confidence 333345556788888888765 233479999999999999999999987
No 215
>3ld9_A DTMP kinase, thymidylate kinase; ssgcid, NIH, niaid, SBRI, UW, emerald biostructures, ehrlich chaffeensis; 2.15A {Ehrlichia chaffeensis}
Probab=96.67 E-value=0.00032 Score=70.37 Aligned_cols=27 Identities=22% Similarity=0.512 Sum_probs=24.1
Q ss_pred CcceEEEEECCCCCcHHHHHHHHHHhC
Q 006117 64 HGIILVGVAGPSGAGKTVFTEKVLNFM 90 (660)
Q Consensus 64 e~~~IIGI~GpSGSGKSTLak~L~~lL 90 (660)
.++.+|.|.|++||||||+++.|+..+
T Consensus 19 ~~~~~i~~~G~~g~GKst~~~~l~~~l 45 (223)
T 3ld9_A 19 PGSMFITFEGIDGSGKTTQSHLLAEYL 45 (223)
T ss_dssp CCCEEEEEECSTTSSHHHHHHHHHHHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHH
Confidence 345699999999999999999999887
No 216
>1ewq_A DNA mismatch repair protein MUTS; multiple domains of protein, mostly mixed alpha-beta structures, one domain is entirely helical; HET: DNA; 2.20A {Thermus aquaticus} SCOP: a.113.1.1 c.37.1.12 c.55.6.1 d.75.2.1 PDB: 1nne_A* 1fw6_A* 1ewr_A*
Probab=96.67 E-value=0.00078 Score=78.81 Aligned_cols=35 Identities=26% Similarity=0.354 Sum_probs=31.7
Q ss_pred eEEEEecceeeccCCcceEEEEECCCCCcHHHHHHHHHHhC
Q 006117 50 FIVIRACQLLAQKNHGIILVGVAGPSGAGKTVFTEKVLNFM 90 (660)
Q Consensus 50 ~~vL~~Isl~i~~ge~~~IIGI~GpSGSGKSTLak~L~~lL 90 (660)
..++++++|. |+ +++|+|||||||||+++.|++..
T Consensus 566 ~~vl~disl~---g~---i~~I~GpNGsGKSTlLr~iagl~ 600 (765)
T 1ewq_A 566 EFVPNDLEMA---HE---LVLITGPNMAGKSTFLRQTALIA 600 (765)
T ss_dssp CCCCEEEEES---SC---EEEEESCSSSSHHHHHHHHHHHH
T ss_pred ceEeeeccCC---Cc---EEEEECCCCCChHHHHHHHHhhh
Confidence 4578999988 78 99999999999999999999974
No 217
>3thx_A DNA mismatch repair protein MSH2; ABC family ATPase, mismatch recognition, mismatched unpaired DNA binding protein-DNA complex; HET: DNA ADP; 2.70A {Homo sapiens} PDB: 2o8c_A* 2o8d_A* 2o8f_A* 3thw_A* 2o8b_A* 3thy_A* 3thz_A* 2o8e_A*
Probab=96.66 E-value=0.00078 Score=80.35 Aligned_cols=36 Identities=14% Similarity=0.207 Sum_probs=32.6
Q ss_pred eEEEEecceeeccCCcceEEEEECCCCCcHHHHHHHHHH
Q 006117 50 FIVIRACQLLAQKNHGIILVGVAGPSGAGKTVFTEKVLN 88 (660)
Q Consensus 50 ~~vL~~Isl~i~~ge~~~IIGI~GpSGSGKSTLak~L~~ 88 (660)
..++++++|.+++|+ +++|+|||||||||+++.++.
T Consensus 649 ~~v~ndisl~~~~g~---i~~ItGpNGsGKSTlLr~ial 684 (934)
T 3thx_A 649 AFIPNDVYFEKDKQM---FHIITGPNMGGKSTYIRQTGV 684 (934)
T ss_dssp CCCCEEEEEETTTBC---EEEEECCTTSSHHHHHHHHHH
T ss_pred eeecccceeecCCCe---EEEEECCCCCCHHHHHHHHHH
Confidence 357899999999999 999999999999999999943
No 218
>2kjq_A DNAA-related protein; solution structure, NESG, structural genomics, PSI-2, protei structure initiative; NMR {Neisseria meningitidis serogroup B}
Probab=96.65 E-value=0.00064 Score=63.37 Aligned_cols=26 Identities=23% Similarity=0.326 Sum_probs=24.2
Q ss_pred cCCcceEEEEECCCCCcHHHHHHHHHHhC
Q 006117 62 KNHGIILVGVAGPSGAGKTVFTEKVLNFM 90 (660)
Q Consensus 62 ~ge~~~IIGI~GpSGSGKSTLak~L~~lL 90 (660)
+++ .++|.||+|||||||++++++.+
T Consensus 35 ~g~---~~~l~G~~G~GKTtL~~~i~~~~ 60 (149)
T 2kjq_A 35 HGQ---FIYVWGEEGAGKSHLLQAWVAQA 60 (149)
T ss_dssp CCS---EEEEESSSTTTTCHHHHHHHHHH
T ss_pred CCC---EEEEECCCCCCHHHHHHHHHHHH
Confidence 566 89999999999999999999987
No 219
>2o8b_B DNA mismatch repair protein MSH6; DNA damage response, somatic hypermutat protein-DNA complex, DNA mispair, cancer; HET: DNA ADP; 2.75A {Homo sapiens} PDB: 2o8c_B* 2o8d_B* 2o8e_B* 2o8f_B*
Probab=96.64 E-value=0.00086 Score=80.75 Aligned_cols=39 Identities=18% Similarity=0.251 Sum_probs=34.1
Q ss_pred CceEEEEecceeecc-------CCcceEEEEECCCCCcHHHHHHHHHHhC
Q 006117 48 GFFIVIRACQLLAQK-------NHGIILVGVAGPSGAGKTVFTEKVLNFM 90 (660)
Q Consensus 48 g~~~vL~~Isl~i~~-------ge~~~IIGI~GpSGSGKSTLak~L~~lL 90 (660)
+...++++++|.+++ |+ +++|+|||||||||+++.+ +++
T Consensus 767 ~~~~v~ndi~l~~~~~~~~~~~g~---i~~ItGpNgsGKSTlLr~i-Gl~ 812 (1022)
T 2o8b_B 767 GDDFIPNDILIGCEEEEQENGKAY---CVLVTGPNMGGKSTLMRQA-GLL 812 (1022)
T ss_dssp CCCCCCEEEEESCCCSCC---CCC---EEEEECCTTSSHHHHHHHH-HHH
T ss_pred CCceEeeeeeeccccccccCCCCc---EEEEECCCCCChHHHHHHH-HHH
Confidence 345689999999876 67 9999999999999999999 775
No 220
>2qag_C Septin-7; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens}
Probab=96.64 E-value=0.0005 Score=75.04 Aligned_cols=41 Identities=22% Similarity=0.157 Sum_probs=32.3
Q ss_pred ceeeeecCceEEEEecceeeccCCcceEEEEECCCCCcHHHHHHHHHHhC
Q 006117 41 DTLSFEKGFFIVIRACQLLAQKNHGIILVGVAGPSGAGKTVFTEKVLNFM 90 (660)
Q Consensus 41 ~~ls~~~g~~~vL~~Isl~i~~ge~~~IIGI~GpSGSGKSTLak~L~~lL 90 (660)
.++++.++...++++++|.+ +|+|+||||||||++.|++..
T Consensus 15 ~~l~~~y~~~~vl~~vsf~I---------~lvG~sGaGKSTLln~L~g~~ 55 (418)
T 2qag_C 15 ANLPNQVYRKSVKRGFEFTL---------MVVGESGLGKSTLINSLFLTD 55 (418)
T ss_dssp CCCCCCTTTTTCC-CCCEEE---------EEECCTTSSHHHHHHHHTTCC
T ss_pred EecceeECCEEEecCCCEEE---------EEECCCCCcHHHHHHHHhCCC
Confidence 33444456667888888875 999999999999999999986
No 221
>1tf7_A KAIC; homohexamer, hexamer, circadian clock protein; HET: ATP; 2.80A {Synechococcus SP} SCOP: c.37.1.11 c.37.1.11 PDB: 3s1a_A* 1u9i_A* 2gbl_A* 3dvl_A* 3k0a_A* 3k09_A* 3jzm_A* 3k0e_A* 4dug_A* 3ua2_A* 3k0c_A* 3k0f_A*
Probab=96.63 E-value=0.0003 Score=78.40 Aligned_cols=31 Identities=19% Similarity=0.284 Sum_probs=28.5
Q ss_pred ceeeccCCcceEEEEECCCCCcHHHHHHHHHHhC
Q 006117 57 QLLAQKNHGIILVGVAGPSGAGKTVFTEKVLNFM 90 (660)
Q Consensus 57 sl~i~~ge~~~IIGI~GpSGSGKSTLak~L~~lL 90 (660)
+..+++|+ +++|+|+||||||||++.+++..
T Consensus 275 ~g~i~~G~---i~~i~G~~GsGKSTLl~~l~g~~ 305 (525)
T 1tf7_A 275 GGGFFKDS---IILATGATGTGKTLLVSRFVENA 305 (525)
T ss_dssp TSSEESSC---EEEEEECTTSSHHHHHHHHHHHH
T ss_pred CCCCCCCc---EEEEEeCCCCCHHHHHHHHHHHH
Confidence 45788899 99999999999999999999987
No 222
>2v54_A DTMP kinase, thymidylate kinase; nucleotide biosynthesis, ATP-binding, nucleotide-binding, poxvirus, transferase; HET: TYD POP; 2.4A {Vaccinia virus copenhagen} PDB: 2w0s_A*
Probab=96.62 E-value=0.0014 Score=62.35 Aligned_cols=34 Identities=18% Similarity=0.281 Sum_probs=26.8
Q ss_pred ceEEEEECCCCCcHHHHHHHHHHhCCCceEEEec
Q 006117 66 IILVGVAGPSGAGKTVFTEKVLNFMPSIAVITMD 99 (660)
Q Consensus 66 ~~IIGI~GpSGSGKSTLak~L~~lLp~~g~I~lD 99 (660)
+.+|+|.|++||||||+++.|+..+++...+..+
T Consensus 4 ~~~I~l~G~~GsGKsT~~~~L~~~l~g~~~~~~~ 37 (204)
T 2v54_A 4 GALIVFEGLDKSGKTTQCMNIMESIPANTIKYLN 37 (204)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHTSCGGGEEEEE
T ss_pred CcEEEEEcCCCCCHHHHHHHHHHHHCCCceEEEe
Confidence 3489999999999999999999987323344443
No 223
>1m7g_A Adenylylsulfate kinase; APS kinase, transferase, sulfate Met nucleotide 2 kinase; HET: AV2 ADX ADP; 1.43A {Penicillium chrysogenum} SCOP: c.37.1.4 PDB: 1d6j_A* 1m7h_A* 3cr7_A*
Probab=96.56 E-value=0.00066 Score=65.93 Aligned_cols=35 Identities=14% Similarity=0.237 Sum_probs=29.2
Q ss_pred eEEEEECCCCCcHHHHHHHHHHhCC-Cce--EEEecCc
Q 006117 67 ILVGVAGPSGAGKTVFTEKVLNFMP-SIA--VITMDNY 101 (660)
Q Consensus 67 ~IIGI~GpSGSGKSTLak~L~~lLp-~~g--~I~lDg~ 101 (660)
.+|.|.|++||||||+++.|++.++ ..| .+.+|+.
T Consensus 26 ~~i~~~G~~GsGKsT~~~~l~~~l~~~~g~~~~~~~~d 63 (211)
T 1m7g_A 26 LTIWLTGLSASGKSTLAVELEHQLVRDRRVHAYRLDGD 63 (211)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHHHHHHHCCCEEEECHH
T ss_pred CEEEEECCCCCCHHHHHHHHHHHhccccCCcEEEECCh
Confidence 3999999999999999999999883 455 7777653
No 224
>2p5t_B PEZT; postsegregational killing system, phosphoryltransferase, HEL helix motif, transcription regulator; 3.20A {Streptococcus pneumoniae}
Probab=96.55 E-value=0.0012 Score=66.26 Aligned_cols=38 Identities=24% Similarity=0.301 Sum_probs=29.4
Q ss_pred cCCcceEEEEECCCCCcHHHHHHHHHHhCCCceEEEecC
Q 006117 62 KNHGIILVGVAGPSGAGKTVFTEKVLNFMPSIAVITMDN 100 (660)
Q Consensus 62 ~ge~~~IIGI~GpSGSGKSTLak~L~~lLp~~g~I~lDg 100 (660)
....+.+|.|+|++||||||+++.|++.++ .+.+.+|+
T Consensus 28 ~~~~~~~i~l~G~~GsGKSTla~~L~~~l~-~~~~~~~~ 65 (253)
T 2p5t_B 28 SSKQPIAILLGGQSGAGKTTIHRIKQKEFQ-GNIVIIDG 65 (253)
T ss_dssp CCSSCEEEEEESCGGGTTHHHHHHHHHHTT-TCCEEECG
T ss_pred cccCCeEEEEECCCCCCHHHHHHHHHHhcC-CCcEEEec
Confidence 344567999999999999999999999883 23444444
No 225
>1e6c_A Shikimate kinase; phosphoryl transfer, ADP, shikimate pathway, P-loop protein, transferase; 1.8A {Erwinia chrysanthemi} SCOP: c.37.1.2 PDB: 1shk_A 2shk_A*
Probab=96.53 E-value=0.0011 Score=61.56 Aligned_cols=34 Identities=15% Similarity=0.270 Sum_probs=27.6
Q ss_pred eEEEEECCCCCcHHHHHHHHHHhCCCceEEEecCc
Q 006117 67 ILVGVAGPSGAGKTVFTEKVLNFMPSIAVITMDNY 101 (660)
Q Consensus 67 ~IIGI~GpSGSGKSTLak~L~~lLp~~g~I~lDg~ 101 (660)
.+|+|+|++||||||+++.|+..+ +...++.|.+
T Consensus 3 ~~I~l~G~~GsGKsT~a~~La~~l-g~~~id~d~~ 36 (173)
T 1e6c_A 3 EPIFMVGARGCGMTTVGRELARAL-GYEFVDTDIF 36 (173)
T ss_dssp CCEEEESCTTSSHHHHHHHHHHHH-TCEEEEHHHH
T ss_pred ceEEEECCCCCCHHHHHHHHHHHh-CCcEEcccHH
Confidence 479999999999999999999987 3445666654
No 226
>2iyv_A Shikimate kinase, SK; transferase, aromatic amino acid biosynthesis, P-loop kinase, metal- binding, shikimate pathway; HET: ADP; 1.35A {Mycobacterium tuberculosis} SCOP: c.37.1.2 PDB: 2iyr_A* 2iyq_A* 2iyt_A 2iyu_A* 2iys_A* 2iyw_A* 2iyx_A* 2iyy_A* 2iyz_A* 2g1k_A* 1l4y_A* 1u8a_A* 1we2_A* 1zyu_A* 2dfn_A* 2dft_A* 2g1j_A 1l4u_A* 3baf_A*
Probab=96.50 E-value=0.00093 Score=62.95 Aligned_cols=33 Identities=15% Similarity=0.340 Sum_probs=27.7
Q ss_pred EEEEECCCCCcHHHHHHHHHHhCCCceEEEecCc
Q 006117 68 LVGVAGPSGAGKTVFTEKVLNFMPSIAVITMDNY 101 (660)
Q Consensus 68 IIGI~GpSGSGKSTLak~L~~lLp~~g~I~lDg~ 101 (660)
+|+|+|++||||||+++.|+..+ +...++.|..
T Consensus 4 ~I~l~G~~GsGKsT~a~~La~~l-g~~~id~D~~ 36 (184)
T 2iyv_A 4 KAVLVGLPGSGKSTIGRRLAKAL-GVGLLDTDVA 36 (184)
T ss_dssp SEEEECSTTSSHHHHHHHHHHHH-TCCEEEHHHH
T ss_pred eEEEECCCCCCHHHHHHHHHHHc-CCCEEeCchH
Confidence 69999999999999999999976 3446777764
No 227
>2cvh_A DNA repair and recombination protein RADB; filament formation, homologous recombination, ATPase domain, hyperthermophIle; HET: DNA; 2.20A {Thermococcus kodakarensis} PDB: 2cvf_A*
Probab=96.50 E-value=0.0016 Score=62.40 Aligned_cols=38 Identities=24% Similarity=0.211 Sum_probs=30.2
Q ss_pred eeccCCcceEEEEECCCCCcHHHHHHHHHHhCCCceEEEecC
Q 006117 59 LAQKNHGIILVGVAGPSGAGKTVFTEKVLNFMPSIAVITMDN 100 (660)
Q Consensus 59 ~i~~ge~~~IIGI~GpSGSGKSTLak~L~~lLp~~g~I~lDg 100 (660)
-+++|+ +++|+|++|||||||+..|+. .++.+.+.++.
T Consensus 16 gi~~G~---~~~i~G~~GsGKTtl~~~l~~-~~~~~v~~i~~ 53 (220)
T 2cvh_A 16 GFAPGV---LTQVYGPYASGKTTLALQTGL-LSGKKVAYVDT 53 (220)
T ss_dssp SBCTTS---EEEEECSTTSSHHHHHHHHHH-HHCSEEEEEES
T ss_pred CCcCCE---EEEEECCCCCCHHHHHHHHHH-HcCCcEEEEEC
Confidence 467888 999999999999999999998 32445555553
No 228
>2pbr_A DTMP kinase, thymidylate kinase; transferase, nucleotide biosynthesis, TMP-binding, A binding, structural genomics, NPPSFA; 1.96A {Aquifex aeolicus}
Probab=96.48 E-value=0.0017 Score=61.01 Aligned_cols=32 Identities=25% Similarity=0.436 Sum_probs=26.4
Q ss_pred EEEEECCCCCcHHHHHHHHHHhC--CCceEEEec
Q 006117 68 LVGVAGPSGAGKTVFTEKVLNFM--PSIAVITMD 99 (660)
Q Consensus 68 IIGI~GpSGSGKSTLak~L~~lL--p~~g~I~lD 99 (660)
+|+|.|++||||||+++.|+..+ .+...+..|
T Consensus 2 ~I~l~G~~GsGKsT~~~~L~~~l~~~g~~~i~~d 35 (195)
T 2pbr_A 2 LIAFEGIDGSGKTTQAKKLYEYLKQKGYFVSLYR 35 (195)
T ss_dssp EEEEECSTTSCHHHHHHHHHHHHHHTTCCEEEEE
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHHCCCeEEEEe
Confidence 79999999999999999999976 244456665
No 229
>1kht_A Adenylate kinase; phosphotransferase, signaling protein, transferase; HET: AMP; 2.50A {Methanococcus voltae} SCOP: c.37.1.1 PDB: 3h86_B* 1ki9_A
Probab=96.48 E-value=0.0012 Score=61.77 Aligned_cols=24 Identities=25% Similarity=0.390 Sum_probs=22.5
Q ss_pred eEEEEECCCCCcHHHHHHHHHHhC
Q 006117 67 ILVGVAGPSGAGKTVFTEKVLNFM 90 (660)
Q Consensus 67 ~IIGI~GpSGSGKSTLak~L~~lL 90 (660)
.+|.|.|++||||||+++.|+..+
T Consensus 4 ~~I~i~G~~GsGKsT~~~~L~~~l 27 (192)
T 1kht_A 4 KVVVVTGVPGVGSTTSSQLAMDNL 27 (192)
T ss_dssp CEEEEECCTTSCHHHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHHH
Confidence 489999999999999999999976
No 230
>1via_A Shikimate kinase; structural genomics, transferase; HET: MSE; 1.57A {Campylobacter jejuni} SCOP: c.37.1.2
Probab=96.46 E-value=0.0012 Score=61.93 Aligned_cols=33 Identities=15% Similarity=0.257 Sum_probs=26.8
Q ss_pred EEEEECCCCCcHHHHHHHHHHhCCCceEEEecCc
Q 006117 68 LVGVAGPSGAGKTVFTEKVLNFMPSIAVITMDNY 101 (660)
Q Consensus 68 IIGI~GpSGSGKSTLak~L~~lLp~~g~I~lDg~ 101 (660)
+|.|+|++||||||+++.|+..+ +...+..|..
T Consensus 6 ~i~i~G~~GsGKsTla~~La~~l-~~~~~d~d~~ 38 (175)
T 1via_A 6 NIVFIGFMGSGKSTLARALAKDL-DLVFLDSDFL 38 (175)
T ss_dssp CEEEECCTTSCHHHHHHHHHHHH-TCEEEEHHHH
T ss_pred EEEEEcCCCCCHHHHHHHHHHHc-CCCEEcccHH
Confidence 68999999999999999999987 3445555543
No 231
>3cr8_A Sulfate adenylyltranferase, adenylylsulfate kinase; APS kinase, transferase, sulfate metabolism, nucleotide 2 kinase; 2.95A {Thiobacillus denitrificans}
Probab=96.46 E-value=0.0012 Score=74.61 Aligned_cols=40 Identities=20% Similarity=0.238 Sum_probs=31.8
Q ss_pred eccCCcceEEEEECCCCCcHHHHHHHHHHhC-CCce-EE-EecCcc
Q 006117 60 AQKNHGIILVGVAGPSGAGKTVFTEKVLNFM-PSIA-VI-TMDNYN 102 (660)
Q Consensus 60 i~~ge~~~IIGI~GpSGSGKSTLak~L~~lL-p~~g-~I-~lDg~~ 102 (660)
+++|+ +|+|+|+|||||||++++|++.+ +..| .+ .+|+..
T Consensus 366 ~~~G~---iI~LiG~sGSGKSTLar~La~~L~~~~G~~i~~lDgD~ 408 (552)
T 3cr8_A 366 ERQGF---TVFFTGLSGAGKSTLARALAARLMEMGGRCVTLLDGDI 408 (552)
T ss_dssp GGSCE---EEEEEESSCHHHHHHHHHHHHHHHTTCSSCEEEESSHH
T ss_pred cccce---EEEEECCCCChHHHHHHHHHHhhcccCCceEEEECCcH
Confidence 44555 99999999999999999999998 6554 45 477643
No 232
>2gks_A Bifunctional SAT/APS kinase; transferase, sulfurylase; HET: ADP; 2.31A {Aquifex aeolicus}
Probab=96.43 E-value=0.0033 Score=70.80 Aligned_cols=27 Identities=22% Similarity=0.266 Sum_probs=24.1
Q ss_pred CcceEEEEECCCCCcHHHHHHHHHHhC
Q 006117 64 HGIILVGVAGPSGAGKTVFTEKVLNFM 90 (660)
Q Consensus 64 e~~~IIGI~GpSGSGKSTLak~L~~lL 90 (660)
..+.+|.|+|++||||||+++.|+..+
T Consensus 370 ~~~~~I~l~G~~GsGKSTia~~La~~L 396 (546)
T 2gks_A 370 KQGFCVWLTGLPCAGKSTIAEILATML 396 (546)
T ss_dssp GCCEEEEEECSTTSSHHHHHHHHHHHH
T ss_pred ccceEEEccCCCCCCHHHHHHHHHHHh
Confidence 345799999999999999999999876
No 233
>1udx_A The GTP-binding protein OBG; TGS domain, riken structural genomics/proteomics initiative, RSGI, structural genomics; 2.07A {Thermus thermophilus} SCOP: b.117.1.1 c.37.1.8 d.242.1.1
Probab=96.43 E-value=0.0011 Score=72.21 Aligned_cols=35 Identities=23% Similarity=0.169 Sum_probs=32.1
Q ss_pred EEecceeeccCCcceEEEEECCCCCcHHHHHHHHHHhC
Q 006117 53 IRACQLLAQKNHGIILVGVAGPSGAGKTVFTEKVLNFM 90 (660)
Q Consensus 53 L~~Isl~i~~ge~~~IIGI~GpSGSGKSTLak~L~~lL 90 (660)
.++++|.++.+. .|+|+|++|||||||+++|++..
T Consensus 147 ~~~i~lelk~g~---~VgLVG~~gAGKSTLL~~Lsg~~ 181 (416)
T 1udx_A 147 KRRLRLELMLIA---DVGLVGYPNAGKSSLLAAMTRAH 181 (416)
T ss_dssp EEEEEEEECCSC---SEEEECCGGGCHHHHHHHHCSSC
T ss_pred EeeeeeEEcCCC---EEEEECCCCCcHHHHHHHHHcCC
Confidence 478999999998 99999999999999999999874
No 234
>1zd8_A GTP:AMP phosphotransferase mitochondrial; ATP:AMP phosphotransferase, myokinase, structural genomics, structural genomics consortium, SGC; 1.48A {Homo sapiens} PDB: 2ak3_A*
Probab=96.42 E-value=0.0015 Score=64.04 Aligned_cols=35 Identities=11% Similarity=0.386 Sum_probs=29.1
Q ss_pred ceEEEEECCCCCcHHHHHHHHHHhCCCceEEEecCc
Q 006117 66 IILVGVAGPSGAGKTVFTEKVLNFMPSIAVITMDNY 101 (660)
Q Consensus 66 ~~IIGI~GpSGSGKSTLak~L~~lLp~~g~I~lDg~ 101 (660)
+.+|.|.|++||||||+++.|+..+ +...++.|+.
T Consensus 7 ~~~I~l~G~~GsGKsT~a~~La~~l-~~~~i~~d~~ 41 (227)
T 1zd8_A 7 LLRAVIMGAPGSGKGTVSSRITTHF-ELKHLSSGDL 41 (227)
T ss_dssp CCEEEEEECTTSSHHHHHHHHHHHS-SSEEEEHHHH
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHc-CCeEEechHH
Confidence 4589999999999999999999887 4556766654
No 235
>1vma_A Cell division protein FTSY; TM0570, structural genomics, JCS protein structure initiative, PSI, joint center for structu genomics; HET: CIT; 1.60A {Thermotoga maritima} SCOP: a.24.13.1 c.37.1.10
Probab=96.41 E-value=0.0012 Score=68.99 Aligned_cols=33 Identities=21% Similarity=0.322 Sum_probs=26.5
Q ss_pred ceEEEEECCCCCcHHHHHHHHHHhC-CCceEEEe
Q 006117 66 IILVGVAGPSGAGKTVFTEKVLNFM-PSIAVITM 98 (660)
Q Consensus 66 ~~IIGI~GpSGSGKSTLak~L~~lL-p~~g~I~l 98 (660)
+.+|+|+|++||||||++..|++.+ +..+.+.+
T Consensus 104 ~~vi~ivG~~GsGKTTl~~~LA~~l~~~g~kV~l 137 (306)
T 1vma_A 104 PFVIMVVGVNGTGKTTSCGKLAKMFVDEGKSVVL 137 (306)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHHHHHHTTCCEEE
T ss_pred CeEEEEEcCCCChHHHHHHHHHHHHHhcCCEEEE
Confidence 3499999999999999999999998 43344443
No 236
>2z0h_A DTMP kinase, thymidylate kinase; ATP-binding, nucleotide biosynthesis, nucleotide-binding, transferase, structural genomics, NPPSFA; HET: ADP TYD; 2.10A {Thermotoga maritima} PDB: 3hjn_A*
Probab=96.39 E-value=0.0014 Score=61.88 Aligned_cols=23 Identities=17% Similarity=0.482 Sum_probs=21.9
Q ss_pred EEEEECCCCCcHHHHHHHHHHhC
Q 006117 68 LVGVAGPSGAGKTVFTEKVLNFM 90 (660)
Q Consensus 68 IIGI~GpSGSGKSTLak~L~~lL 90 (660)
+|+|.|++||||||+++.|+..+
T Consensus 2 ~I~l~G~~GsGKsT~~~~L~~~l 24 (197)
T 2z0h_A 2 FITFEGIDGSGKSTQIQLLAQYL 24 (197)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHH
Confidence 79999999999999999999987
No 237
>3gmt_A Adenylate kinase; ssgcid, ATP-BIN cytoplasm, nucleotide biosynthesis, nucleotide-BIND transferase, structural genomics; 2.10A {Burkholderia pseudomallei 1710B}
Probab=96.37 E-value=0.0014 Score=66.07 Aligned_cols=33 Identities=21% Similarity=0.299 Sum_probs=27.1
Q ss_pred eEEEEECCCCCcHHHHHHHHHHhCCCceEEEecC
Q 006117 67 ILVGVAGPSGAGKTVFTEKVLNFMPSIAVITMDN 100 (660)
Q Consensus 67 ~IIGI~GpSGSGKSTLak~L~~lLp~~g~I~lDg 100 (660)
.-+||.|+.||||||+++.|+..+ +...|+.++
T Consensus 9 ~~~~~~G~pGsGKsT~a~~L~~~~-g~~~is~gd 41 (230)
T 3gmt_A 9 MRLILLGAPGAGKGTQANFIKEKF-GIPQISTGD 41 (230)
T ss_dssp CEEEEECCTTSCHHHHHHHHHHHH-TCCEECHHH
T ss_pred cceeeECCCCCCHHHHHHHHHHHh-CCCeeechH
Confidence 368999999999999999999987 444666654
No 238
>1nks_A Adenylate kinase; thermophilic, transferase; HET: AMP ADP; 2.57A {Sulfolobus acidocaldarius} SCOP: c.37.1.1
Probab=96.35 E-value=0.0016 Score=61.01 Aligned_cols=24 Identities=29% Similarity=0.380 Sum_probs=22.5
Q ss_pred eEEEEECCCCCcHHHHHHHHHHhC
Q 006117 67 ILVGVAGPSGAGKTVFTEKVLNFM 90 (660)
Q Consensus 67 ~IIGI~GpSGSGKSTLak~L~~lL 90 (660)
.+|.|.|++||||||+++.|+..+
T Consensus 2 ~~I~i~G~~GsGKsT~~~~L~~~l 25 (194)
T 1nks_A 2 KIGIVTGIPGVGKSTVLAKVKEIL 25 (194)
T ss_dssp EEEEEEECTTSCHHHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHHH
Confidence 479999999999999999999987
No 239
>2wwf_A Thymidilate kinase, putative; transferase, malaria; HET: TMP ADP; 1.89A {Plasmodium falciparum} PDB: 2wwg_A* 2wwh_A* 2wwi_A*
Probab=96.35 E-value=0.0014 Score=62.70 Aligned_cols=25 Identities=12% Similarity=0.294 Sum_probs=22.9
Q ss_pred ceEEEEECCCCCcHHHHHHHHHHhC
Q 006117 66 IILVGVAGPSGAGKTVFTEKVLNFM 90 (660)
Q Consensus 66 ~~IIGI~GpSGSGKSTLak~L~~lL 90 (660)
+.+|+|+|++||||||+++.|+..+
T Consensus 10 ~~~I~l~G~~GsGKST~~~~L~~~l 34 (212)
T 2wwf_A 10 GKFIVFEGLDRSGKSTQSKLLVEYL 34 (212)
T ss_dssp SCEEEEEESTTSSHHHHHHHHHHHH
T ss_pred CCEEEEEcCCCCCHHHHHHHHHHHH
Confidence 4599999999999999999999876
No 240
>1gvn_B Zeta; postsegregational killing system, plasmid; 1.95A {Streptococcus pyogenes} SCOP: c.37.1.21 PDB: 3q8x_B*
Probab=96.33 E-value=0.0018 Score=66.78 Aligned_cols=29 Identities=17% Similarity=0.242 Sum_probs=25.3
Q ss_pred CCcceEEEEECCCCCcHHHHHHHHHHhCC
Q 006117 63 NHGIILVGVAGPSGAGKTVFTEKVLNFMP 91 (660)
Q Consensus 63 ge~~~IIGI~GpSGSGKSTLak~L~~lLp 91 (660)
...+.+|.|+|++||||||+++.|+..++
T Consensus 30 ~~~~~livl~G~sGsGKSTla~~L~~~~~ 58 (287)
T 1gvn_B 30 VESPTAFLLGGQPGSGKTSLRSAIFEETQ 58 (287)
T ss_dssp CSSCEEEEEECCTTSCTHHHHHHHHHHTT
T ss_pred CCCCeEEEEECCCCCCHHHHHHHHHHHhC
Confidence 34567999999999999999999998874
No 241
>2vli_A Antibiotic resistance protein; transferase, tunicamycin, phosphotransferase; 1.95A {Deinococcus radiodurans}
Probab=96.31 E-value=0.0015 Score=61.14 Aligned_cols=25 Identities=24% Similarity=0.375 Sum_probs=19.3
Q ss_pred ceEEEEECCCCCcHHHHHHHHHHhC
Q 006117 66 IILVGVAGPSGAGKTVFTEKVLNFM 90 (660)
Q Consensus 66 ~~IIGI~GpSGSGKSTLak~L~~lL 90 (660)
+.+|.|.|++||||||+++.|+..+
T Consensus 5 ~~~I~l~G~~GsGKST~a~~La~~l 29 (183)
T 2vli_A 5 SPIIWINGPFGVGKTHTAHTLHERL 29 (183)
T ss_dssp CCEEEEECCC----CHHHHHHHHHS
T ss_pred CeEEEEECCCCCCHHHHHHHHHHhc
Confidence 4589999999999999999999887
No 242
>1nn5_A Similar to deoxythymidylate kinase (thymidylate K; P-loop, D4TMP, transferase; HET: 2DT ANP; 1.50A {Homo sapiens} SCOP: c.37.1.1 PDB: 1e2e_A* 1e2d_A* 1e2g_A* 1e2q_A* 1e99_A* 1e9a_A* 1e9b_A* 1nmx_A* 1nmz_A* 1nn0_A* 1nn1_A* 1e2f_A* 1nn3_A* 2xx3_A* 1e9c_A* 1e9d_A* 1e9e_A* 1e98_A* 1nmy_A* 1e9f_A*
Probab=96.30 E-value=0.0016 Score=62.41 Aligned_cols=25 Identities=24% Similarity=0.345 Sum_probs=22.9
Q ss_pred ceEEEEECCCCCcHHHHHHHHHHhC
Q 006117 66 IILVGVAGPSGAGKTVFTEKVLNFM 90 (660)
Q Consensus 66 ~~IIGI~GpSGSGKSTLak~L~~lL 90 (660)
+.+|+|+|++||||||+++.|+..+
T Consensus 9 ~~~I~l~G~~GsGKsT~~~~L~~~l 33 (215)
T 1nn5_A 9 GALIVLEGVDRAGKSTQSRKLVEAL 33 (215)
T ss_dssp CCEEEEEESTTSSHHHHHHHHHHHH
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHH
Confidence 4599999999999999999999876
No 243
>2f9l_A RAB11B, member RAS oncogene family; RAB11B GTPase, vesicle transport, hydrolase; HET: GDP; 1.55A {Homo sapiens} SCOP: c.37.1.8 PDB: 2f9m_A* 1yzk_A* 2hv8_A* 2gzd_A* 2gzh_A* 2d7c_A* 3bfk_A*
Probab=96.24 E-value=0.0031 Score=59.90 Aligned_cols=25 Identities=24% Similarity=0.326 Sum_probs=22.6
Q ss_pred ceEEEEECCCCCcHHHHHHHHHHhC
Q 006117 66 IILVGVAGPSGAGKTVFTEKVLNFM 90 (660)
Q Consensus 66 ~~IIGI~GpSGSGKSTLak~L~~lL 90 (660)
.+.|+|+|++|||||||++.|.+..
T Consensus 5 ~~kv~lvG~~g~GKSTLl~~l~~~~ 29 (199)
T 2f9l_A 5 LFKVVLIGDSGVGKSNLLSRFTRNE 29 (199)
T ss_dssp EEEEEEESSTTSSHHHHHHHHHHSC
T ss_pred eEEEEEECcCCCCHHHHHHHHhcCC
Confidence 4679999999999999999999873
No 244
>1ls1_A Signal recognition particle protein; FFH, SRP54, SRP, GTPase, ultrahigh resolution, protein transport; 1.10A {Thermus aquaticus} SCOP: a.24.13.1 c.37.1.10 PDB: 1jpn_B* 1jpj_A* 1ry1_U* 2j45_A* 1o87_A* 2c04_A* 2j46_A* 1rj9_B* 2c03_A* 2j7p_A* 1okk_A* 2cnw_A* 1ng1_A* 2xkv_A 3ng1_A 1ffh_A 2ng1_A*
Probab=96.18 E-value=0.0021 Score=66.58 Aligned_cols=43 Identities=21% Similarity=0.114 Sum_probs=33.0
Q ss_pred EecceeeccCCcceEEEEECCCCCcHHHHHHHHHHhC-CCceEEEecCc
Q 006117 54 RACQLLAQKNHGIILVGVAGPSGAGKTVFTEKVLNFM-PSIAVITMDNY 101 (660)
Q Consensus 54 ~~Isl~i~~ge~~~IIGI~GpSGSGKSTLak~L~~lL-p~~g~I~lDg~ 101 (660)
++++|. +++ +++|+|++|+||||++..|++.+ +..+.+.+.+.
T Consensus 91 ~~i~~~--~~~---~i~i~g~~G~GKTT~~~~la~~~~~~~~~v~l~~~ 134 (295)
T 1ls1_A 91 RLPVLK--DRN---LWFLVGLQGSGKTTTAAKLALYYKGKGRRPLLVAA 134 (295)
T ss_dssp CCCCCC--SSE---EEEEECCTTTTHHHHHHHHHHHHHHTTCCEEEEEC
T ss_pred ceeecC--CCe---EEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEecC
Confidence 567776 555 99999999999999999999998 34445555443
No 245
>1np6_A Molybdopterin-guanine dinucleotide biosynthesis protein B; mixed alpha-beta fold, elongated beta-sheet, walker A motif, P-loop structural motif; 1.90A {Escherichia coli} SCOP: c.37.1.10 PDB: 1p9n_A
Probab=96.15 E-value=0.0041 Score=59.78 Aligned_cols=35 Identities=29% Similarity=0.355 Sum_probs=28.2
Q ss_pred ceEEEEECCCCCcHHHHHHHHHHhCC----CceEEEecC
Q 006117 66 IILVGVAGPSGAGKTVFTEKVLNFMP----SIAVITMDN 100 (660)
Q Consensus 66 ~~IIGI~GpSGSGKSTLak~L~~lLp----~~g~I~lDg 100 (660)
..+++|+|++|||||||++.|.+.++ ..+.+..+.
T Consensus 6 ~~~i~i~G~sGsGKTTl~~~l~~~l~~~g~~v~~i~~~~ 44 (174)
T 1np6_A 6 IPLLAFAAWSGTGKTTLLKKLIPALCARGIRPGLIKHTH 44 (174)
T ss_dssp CCEEEEECCTTSCHHHHHHHHHHHHHHTTCCEEEEEECC
T ss_pred ceEEEEEeCCCCCHHHHHHHHHHhccccCCceeEEeeCC
Confidence 45899999999999999999998761 356666654
No 246
>3crm_A TRNA delta(2)-isopentenylpyrophosphate transferase; ATP-binding, nucleotide-binding, nucleotidyltransferase, tRNA processing; 1.90A {Pseudomonas aeruginosa} PDB: 3crq_A 3crr_A
Probab=96.15 E-value=0.0046 Score=65.37 Aligned_cols=35 Identities=23% Similarity=0.338 Sum_probs=30.9
Q ss_pred eEEEEECCCCCcHHHHHHHHHHhCCCceEEEecCcc
Q 006117 67 ILVGVAGPSGAGKTVFTEKVLNFMPSIAVITMDNYN 102 (660)
Q Consensus 67 ~IIGI~GpSGSGKSTLak~L~~lLp~~g~I~lDg~~ 102 (660)
.+|.|+||+||||||+++.|+..+ +...|+.|.+.
T Consensus 6 ~~i~i~GptGsGKTtla~~La~~l-~~~iis~Ds~q 40 (323)
T 3crm_A 6 PAIFLMGPTAAGKTDLAMALADAL-PCELISVDSAL 40 (323)
T ss_dssp EEEEEECCTTSCHHHHHHHHHHHS-CEEEEEECTTT
T ss_pred cEEEEECCCCCCHHHHHHHHHHHc-CCcEEeccchh
Confidence 489999999999999999999998 46788998863
No 247
>2yvu_A Probable adenylyl-sulfate kinase; transferase, structural genomics, NPPSFA, national P protein structural and functional analyses; 2.10A {Aeropyrum pernix}
Probab=96.14 E-value=0.0027 Score=60.00 Aligned_cols=25 Identities=28% Similarity=0.529 Sum_probs=23.1
Q ss_pred ceEEEEECCCCCcHHHHHHHHHHhC
Q 006117 66 IILVGVAGPSGAGKTVFTEKVLNFM 90 (660)
Q Consensus 66 ~~IIGI~GpSGSGKSTLak~L~~lL 90 (660)
+.+|.|.|++||||||+++.|++.+
T Consensus 13 ~~~i~l~G~~GsGKsT~~~~L~~~l 37 (186)
T 2yvu_A 13 GIVVWLTGLPGSGKTTIATRLADLL 37 (186)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHHHH
T ss_pred CcEEEEEcCCCCCHHHHHHHHHHHH
Confidence 3499999999999999999999987
No 248
>1gtv_A TMK, thymidylate kinase; transferase, transferase (ATP:TMP phosphotransferase); HET: TYD TMP; 1.55A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1g3u_A* 1gsi_A* 1mrn_A* 1mrs_A* 1n5i_A* 1n5j_A* 1n5k_A* 1n5l_A* 1w2g_A* 1w2h_A*
Probab=96.10 E-value=0.0012 Score=63.44 Aligned_cols=23 Identities=35% Similarity=0.621 Sum_probs=22.0
Q ss_pred EEEEECCCCCcHHHHHHHHHHhC
Q 006117 68 LVGVAGPSGAGKTVFTEKVLNFM 90 (660)
Q Consensus 68 IIGI~GpSGSGKSTLak~L~~lL 90 (660)
+|+|.|++||||||+++.|+..+
T Consensus 2 ~I~i~G~~GsGKsTl~~~L~~~l 24 (214)
T 1gtv_A 2 LIAIEGVDGAGKRTLVEKLSGAF 24 (214)
T ss_dssp EEEEEEEEEEEHHHHHHHHHHHH
T ss_pred EEEEEcCCCCCHHHHHHHHHHHH
Confidence 79999999999999999999987
No 249
>3exa_A TRNA delta(2)-isopentenylpyrophosphate transferase; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; 2.30A {Bacillus halodurans} PDB: 2qgn_A
Probab=96.10 E-value=0.0047 Score=65.25 Aligned_cols=35 Identities=29% Similarity=0.357 Sum_probs=30.6
Q ss_pred ceEEEEECCCCCcHHHHHHHHHHhCCCceEEEecCc
Q 006117 66 IILVGVAGPSGAGKTVFTEKVLNFMPSIAVITMDNY 101 (660)
Q Consensus 66 ~~IIGI~GpSGSGKSTLak~L~~lLp~~g~I~lDg~ 101 (660)
+.+|.|+||+|||||||+..|+..+ +...|+.|..
T Consensus 3 ~~~i~i~GptgsGKt~la~~La~~~-~~~iis~Ds~ 37 (322)
T 3exa_A 3 EKLVAIVGPTAVGKTKTSVMLAKRL-NGEVISGDSM 37 (322)
T ss_dssp CEEEEEECCTTSCHHHHHHHHHHTT-TEEEEECCGG
T ss_pred CcEEEEECCCcCCHHHHHHHHHHhC-ccceeecCcc
Confidence 4589999999999999999999998 4568888875
No 250
>3qf7_A RAD50; ABC-ATPase, ATPase, hydrolase; HET: ANP; 1.90A {Thermotoga maritima} PDB: 3qg5_A 3tho_A*
Probab=96.08 E-value=0.0028 Score=67.57 Aligned_cols=34 Identities=26% Similarity=0.449 Sum_probs=27.7
Q ss_pred EEecceeeccCCcceEEEEECCCCCcHHHHHHHHHHhC
Q 006117 53 IRACQLLAQKNHGIILVGVAGPSGAGKTVFTEKVLNFM 90 (660)
Q Consensus 53 L~~Isl~i~~ge~~~IIGI~GpSGSGKSTLak~L~~lL 90 (660)
++++++.++.| +++|+|||||||||++.+|+..+
T Consensus 14 ~~~~~i~~~~g----~~~i~G~NGaGKTTll~ai~~al 47 (365)
T 3qf7_A 14 LKNVDIEFQSG----ITVVEGPNGAGKSSLFEAISFAL 47 (365)
T ss_dssp EEEEEEECCSE----EEEEECCTTSSHHHHHHHHHHHH
T ss_pred ccceEEecCCC----eEEEECCCCCCHHHHHHHHHHHh
Confidence 56677777542 67799999999999999999775
No 251
>4hlc_A DTMP kinase, thymidylate kinase; TMK, MRSA, pipiridine, transfera transferase inhibitor complex; HET: T05; 1.55A {Staphylococcus aureus subsp} PDB: 2cck_A 4gfd_A* 4gsy_A* 4hdc_A* 4hej_A* 2ccj_A* 4hld_A* 2ccg_A*
Probab=96.08 E-value=0.0026 Score=62.47 Aligned_cols=24 Identities=29% Similarity=0.605 Sum_probs=22.4
Q ss_pred eEEEEECCCCCcHHHHHHHHHHhC
Q 006117 67 ILVGVAGPSGAGKTVFTEKVLNFM 90 (660)
Q Consensus 67 ~IIGI~GpSGSGKSTLak~L~~lL 90 (660)
.+|.|-|+.||||||+++.|+..+
T Consensus 3 kFI~~EG~dGsGKsTq~~~L~~~L 26 (205)
T 4hlc_A 3 AFITFEGPEGSGKTTVINEVYHRL 26 (205)
T ss_dssp EEEEEECCTTSCHHHHHHHHHHHH
T ss_pred CEEEEECCCCCcHHHHHHHHHHHH
Confidence 389999999999999999999987
No 252
>1xjc_A MOBB protein homolog; structural genomics, midwest center for structural GEN PSI, protein structure initiative, MCSG; 2.10A {Geobacillus stearothermophilus} SCOP: c.37.1.10
Probab=96.04 E-value=0.0045 Score=59.55 Aligned_cols=34 Identities=21% Similarity=0.256 Sum_probs=27.3
Q ss_pred ceEEEEECCCCCcHHHHHHHHHHhC-C---CceEEEec
Q 006117 66 IILVGVAGPSGAGKTVFTEKVLNFM-P---SIAVITMD 99 (660)
Q Consensus 66 ~~IIGI~GpSGSGKSTLak~L~~lL-p---~~g~I~lD 99 (660)
+.+++|+|++||||||++..|...+ . ..+.|..|
T Consensus 4 ~~~i~i~G~sGsGKTTl~~~L~~~l~~~g~~v~~ik~~ 41 (169)
T 1xjc_A 4 MNVWQVVGYKHSGKTTLMEKWVAAAVREGWRVGTVKHH 41 (169)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHHHHHTTCCEEEEECC
T ss_pred CEEEEEECCCCCCHHHHHHHHHHhhHhcCCeeeEEEeC
Confidence 4689999999999999999999876 1 34555554
No 253
>1nlf_A Regulatory protein REPA; replicative DNA helicase structural changes, replication; 1.95A {Escherichia coli} SCOP: c.37.1.11 PDB: 1g8y_A 1olo_A
Probab=95.97 E-value=0.0037 Score=63.36 Aligned_cols=28 Identities=18% Similarity=0.361 Sum_probs=25.8
Q ss_pred eccCCcceEEEEECCCCCcHHHHHHHHHHhC
Q 006117 60 AQKNHGIILVGVAGPSGAGKTVFTEKVLNFM 90 (660)
Q Consensus 60 i~~ge~~~IIGI~GpSGSGKSTLak~L~~lL 90 (660)
+++|+ +++|+|+||||||||+..+++.+
T Consensus 27 l~~G~---i~~i~G~~GsGKTtl~~~l~~~~ 54 (279)
T 1nlf_A 27 MVAGT---VGALVSPGGAGKSMLALQLAAQI 54 (279)
T ss_dssp EETTS---EEEEEESTTSSHHHHHHHHHHHH
T ss_pred ccCCC---EEEEEcCCCCCHHHHHHHHHHHH
Confidence 67888 99999999999999999999865
No 254
>2axn_A 6-phosphofructo-2-kinase/fructose-2,6- biphosphatase 3 (6PF-2-K/FRU- 2,6-P2ASE brain/placenta-type...; bifunctional enzyme, EDTA complex; HET: F6P EDT ADP; 2.10A {Homo sapiens} PDB: 2dwo_A* 2dwp_A* 2i1v_B* 3qpu_A* 3qpv_A* 3qpw_A*
Probab=95.94 E-value=0.0074 Score=67.50 Aligned_cols=37 Identities=19% Similarity=0.398 Sum_probs=29.1
Q ss_pred cceEEEEECCCCCcHHHHHHHHHHhC--C--CceEEEecCc
Q 006117 65 GIILVGVAGPSGAGKTVFTEKVLNFM--P--SIAVITMDNY 101 (660)
Q Consensus 65 ~~~IIGI~GpSGSGKSTLak~L~~lL--p--~~g~I~lDg~ 101 (660)
.+.+|.++|.+||||||+++.|+..+ . +...++.|.+
T Consensus 34 ~~~lIvlvGlpGSGKSTia~~La~~L~~~~~d~~v~s~D~~ 74 (520)
T 2axn_A 34 SPTVIVMVGLPARGKTYISKKLTRYLNWIGVPTKVFNVGEY 74 (520)
T ss_dssp CCEEEEEECCTTSSHHHHHHHHHHHHHHTTCCEEEEEHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHhhcCCCeEEecccHH
Confidence 35689999999999999999999876 2 3445666764
No 255
>1ni3_A YCHF GTPase, YCHF GTP-binding protein; structural genomics, GTP1OBG, PSI, protein structure initiative; 2.80A {Schizosaccharomyces pombe} SCOP: c.37.1.8 d.15.10.2
Probab=95.88 E-value=0.0061 Score=66.00 Aligned_cols=38 Identities=21% Similarity=0.408 Sum_probs=31.1
Q ss_pred eccCCcceEEEEECCCCCcHHHHHHHHHH------------hC-CCceEEEecC
Q 006117 60 AQKNHGIILVGVAGPSGAGKTVFTEKVLN------------FM-PSIAVITMDN 100 (660)
Q Consensus 60 i~~ge~~~IIGI~GpSGSGKSTLak~L~~------------lL-p~~g~I~lDg 100 (660)
+..+. .+||+|++|+|||||+++|.+ .. |..|.+.+.+
T Consensus 17 v~~g~---~vgiVG~pnaGKSTL~n~Ltg~~~a~~~~~p~tTi~p~~G~v~v~~ 67 (392)
T 1ni3_A 17 PGNNL---KTGIVGMPNVGKSTFFRAITKSVLGNPANYPYATIDPEEAKVAVPD 67 (392)
T ss_dssp SSSCC---EEEEEECSSSSHHHHHHHHHHSTTTSTTCCSSCCCCTTEEEEEECC
T ss_pred ccCCC---EEEEECCCCCCHHHHHHHHHCCCcccccCCCceeecceeeeeeeCC
Confidence 34555 999999999999999999999 22 5678888776
No 256
>2dr3_A UPF0273 protein PH0284; RECA superfamily ATPase, hexamer, structural genomics; HET: ADP; 2.00A {Pyrococcus horikoshii}
Probab=95.88 E-value=0.0056 Score=59.62 Aligned_cols=40 Identities=23% Similarity=0.228 Sum_probs=29.2
Q ss_pred ceeeccCCcceEEEEECCCCCcHHHHHHHHHHhC--CCceEEEec
Q 006117 57 QLLAQKNHGIILVGVAGPSGAGKTVFTEKVLNFM--PSIAVITMD 99 (660)
Q Consensus 57 sl~i~~ge~~~IIGI~GpSGSGKSTLak~L~~lL--p~~g~I~lD 99 (660)
.--+++|+ +++|+|++|||||||+..++... .+.+.+.++
T Consensus 17 ~gGl~~G~---~~~i~G~~GsGKTtl~~~~~~~~~~~~~~v~~~~ 58 (247)
T 2dr3_A 17 HGGIPERN---VVLLSGGPGTGKTIFSQQFLWNGLKMGEPGIYVA 58 (247)
T ss_dssp TTSEETTC---EEEEEECTTSSHHHHHHHHHHHHHHTTCCEEEEE
T ss_pred CCCCCCCc---EEEEECCCCCCHHHHHHHHHHHHHhcCCeEEEEE
Confidence 33478888 99999999999999987776543 333444444
No 257
>3foz_A TRNA delta(2)-isopentenylpyrophosphate transferas; nucleoside modification, isopentenyl-tRNA transferase, transferase-RNA complex; 2.50A {Escherichia coli k-12} PDB: 2zxu_A* 2zm5_A
Probab=95.87 E-value=0.0069 Score=63.84 Aligned_cols=36 Identities=19% Similarity=0.367 Sum_probs=31.1
Q ss_pred cceEEEEECCCCCcHHHHHHHHHHhCCCceEEEecCc
Q 006117 65 GIILVGVAGPSGAGKTVFTEKVLNFMPSIAVITMDNY 101 (660)
Q Consensus 65 ~~~IIGI~GpSGSGKSTLak~L~~lLp~~g~I~lDg~ 101 (660)
.+.+|.|+||+|||||||+..|+..+ +...|+.|..
T Consensus 9 ~~~~i~i~GptgsGKt~la~~La~~~-~~~iis~Ds~ 44 (316)
T 3foz_A 9 LPKAIFLMGPTASGKTALAIELRKIL-PVELISVDSA 44 (316)
T ss_dssp CCEEEEEECCTTSCHHHHHHHHHHHS-CEEEEECCTT
T ss_pred CCcEEEEECCCccCHHHHHHHHHHhC-CCcEEecccc
Confidence 35689999999999999999999998 4568888875
No 258
>3a8t_A Adenylate isopentenyltransferase; rossmann fold protein; HET: ATP; 2.37A {Humulus lupulus}
Probab=95.85 E-value=0.0065 Score=64.65 Aligned_cols=35 Identities=23% Similarity=0.399 Sum_probs=30.9
Q ss_pred ceEEEEECCCCCcHHHHHHHHHHhCCCceEEEecCc
Q 006117 66 IILVGVAGPSGAGKTVFTEKVLNFMPSIAVITMDNY 101 (660)
Q Consensus 66 ~~IIGI~GpSGSGKSTLak~L~~lLp~~g~I~lDg~ 101 (660)
+.+|.|+||+|||||||+..|+..+ +...|+.|..
T Consensus 40 ~~lIvI~GPTgsGKTtLa~~LA~~l-~~eiIs~Ds~ 74 (339)
T 3a8t_A 40 EKLLVLMGATGTGKSRLSIDLAAHF-PLEVINSDKM 74 (339)
T ss_dssp CEEEEEECSTTSSHHHHHHHHHTTS-CEEEEECCSS
T ss_pred CceEEEECCCCCCHHHHHHHHHHHC-CCcEEccccc
Confidence 4589999999999999999999998 4568888886
No 259
>3k1j_A LON protease, ATP-dependent protease LON; ATP-binding, nucleotide-binding, Pro hydrolase; HET: ADP PE8; 2.00A {Thermococcus onnurineus}
Probab=95.82 E-value=0.002 Score=73.07 Aligned_cols=52 Identities=15% Similarity=0.217 Sum_probs=42.8
Q ss_pred ecCceEEEEecceeeccCCcceEEEEECCCCCcHHHHHHHHHHhC-CC-ceEEEecC
Q 006117 46 EKGFFIVIRACQLLAQKNHGIILVGVAGPSGAGKTVFTEKVLNFM-PS-IAVITMDN 100 (660)
Q Consensus 46 ~~g~~~vL~~Isl~i~~ge~~~IIGI~GpSGSGKSTLak~L~~lL-p~-~g~I~lDg 100 (660)
-.|...+++.+++.+..++ .++|.||+|+||||++++|++.+ +. .+.+.+++
T Consensus 43 i~G~~~~l~~l~~~i~~g~---~vll~Gp~GtGKTtlar~ia~~l~~~~~~~~~~~~ 96 (604)
T 3k1j_A 43 VIGQEHAVEVIKTAANQKR---HVLLIGEPGTGKSMLGQAMAELLPTETLEDILVFP 96 (604)
T ss_dssp CCSCHHHHHHHHHHHHTTC---CEEEECCTTSSHHHHHHHHHHTSCCSSCEEEEEEC
T ss_pred EECchhhHhhccccccCCC---EEEEEeCCCCCHHHHHHHHhccCCcccCCeEEEeC
Confidence 3466668899999999998 99999999999999999999998 33 35665544
No 260
>2o5v_A DNA replication and repair protein RECF; ABC ATPase, walker A motif, P-loop, signature motif, replication/recombination complex; HET: DNA; 1.61A {Deinococcus radiodurans}
Probab=95.78 E-value=0.0034 Score=67.12 Aligned_cols=35 Identities=26% Similarity=0.338 Sum_probs=29.7
Q ss_pred EEEecceeeccCCcceEEEEECCCCCcHHHHHHHHHHhC
Q 006117 52 VIRACQLLAQKNHGIILVGVAGPSGAGKTVFTEKVLNFM 90 (660)
Q Consensus 52 vL~~Isl~i~~ge~~~IIGI~GpSGSGKSTLak~L~~lL 90 (660)
.++++++.+.+| +++|+|||||||||++++|..+.
T Consensus 16 ~~~~~~~~~~~g----~~~i~G~nG~GKttll~ai~~~~ 50 (359)
T 2o5v_A 16 NLAPGTLNFPEG----VTGIYGENGAGKTNLLEAAYLAL 50 (359)
T ss_dssp TCCSEEEECCSE----EEEEECCTTSSHHHHHHHHHHHH
T ss_pred ceeeeEEEEcCC----eEEEECCCCCChhHHHHHHHHhc
Confidence 357788887643 89999999999999999999875
No 261
>2p67_A LAO/AO transport system kinase; ARGK, structural GEN PSI-2, protein structure initiative, NEW YORK SGX research for structural genomics; 1.80A {Escherichia coli} SCOP: c.37.1.10
Probab=95.78 E-value=0.003 Score=66.51 Aligned_cols=40 Identities=25% Similarity=0.291 Sum_probs=33.4
Q ss_pred CceEEEEecceeeccCCcceEEEEECCCCCcHHHHHHHHHHhC
Q 006117 48 GFFIVIRACQLLAQKNHGIILVGVAGPSGAGKTVFTEKVLNFM 90 (660)
Q Consensus 48 g~~~vL~~Isl~i~~ge~~~IIGI~GpSGSGKSTLak~L~~lL 90 (660)
+...+++++++...++. +|+|+|++|+||||+++.|++.+
T Consensus 41 ~~~~~~~~l~~~~~~~~---~i~i~G~~g~GKSTl~~~l~~~~ 80 (341)
T 2p67_A 41 LSTQLLDAIMPYCGNTL---RLGVTGTPGAGKSTFLEAFGMLL 80 (341)
T ss_dssp HHHHHHHHHGGGCSCSE---EEEEEECTTSCHHHHHHHHHHHH
T ss_pred HHHHHHHhCCcccCCCE---EEEEEcCCCCCHHHHHHHHHHHH
Confidence 34456778888776666 99999999999999999999876
No 262
>1zak_A Adenylate kinase; ATP:AMP-phosphotransferase, transferase; HET: AP5; 3.50A {Zea mays} SCOP: c.37.1.1 g.41.2.1
Probab=95.77 E-value=0.0032 Score=61.33 Aligned_cols=34 Identities=21% Similarity=0.260 Sum_probs=26.5
Q ss_pred ceEEEEECCCCCcHHHHHHHHHHhCCCceEEEecC
Q 006117 66 IILVGVAGPSGAGKTVFTEKVLNFMPSIAVITMDN 100 (660)
Q Consensus 66 ~~IIGI~GpSGSGKSTLak~L~~lLp~~g~I~lDg 100 (660)
+.+|.|.|++||||||+++.|+..++ ...++.|.
T Consensus 5 ~~~I~l~G~~GsGKsT~~~~La~~l~-~~~i~~d~ 38 (222)
T 1zak_A 5 PLKVMISGAPASGKGTQCELIKTKYQ-LAHISAGD 38 (222)
T ss_dssp SCCEEEEESTTSSHHHHHHHHHHHHC-CEECCHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHhC-CceecHHH
Confidence 45899999999999999999999873 33344443
No 263
>1sxj_E Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=95.73 E-value=0.0044 Score=64.16 Aligned_cols=40 Identities=23% Similarity=0.326 Sum_probs=27.4
Q ss_pred ccCCcceEEEEECCCCCcHHHHHHHHHH-hC-CCceEEEecCc
Q 006117 61 QKNHGIILVGVAGPSGAGKTVFTEKVLN-FM-PSIAVITMDNY 101 (660)
Q Consensus 61 ~~ge~~~IIGI~GpSGSGKSTLak~L~~-lL-p~~g~I~lDg~ 101 (660)
..+..+. +.|.||+|+||||+++.|++ ++ ++.|.+.+++.
T Consensus 32 ~~~~~~~-~ll~Gp~G~GKTtl~~~la~~l~~~~~g~i~~~~~ 73 (354)
T 1sxj_E 32 QPRDLPH-LLLYGPNGTGKKTRCMALLESIFGPGVYRLKIDVR 73 (354)
T ss_dssp CTTCCCC-EEEECSTTSSHHHHHHTHHHHHSCTTCCC------
T ss_pred hCCCCCe-EEEECCCCCCHHHHHHHHHHHHcCCCCCeEEecce
Confidence 4444445 89999999999999999999 45 66777776654
No 264
>2xb4_A Adenylate kinase; ATP-binding, nucleotide-binding, transferase; HET: SRT; 1.80A {Desulfovibrio gigas} PDB: 3l0s_A* 3l0p_A*
Probab=95.70 E-value=0.0047 Score=60.63 Aligned_cols=33 Identities=27% Similarity=0.313 Sum_probs=27.2
Q ss_pred EEEEECCCCCcHHHHHHHHHHhCCCceEEEecCc
Q 006117 68 LVGVAGPSGAGKTVFTEKVLNFMPSIAVITMDNY 101 (660)
Q Consensus 68 IIGI~GpSGSGKSTLak~L~~lLp~~g~I~lDg~ 101 (660)
+|.|.|++||||||+++.|+..+ +...++.|+.
T Consensus 2 ~I~l~G~~GsGKsT~a~~La~~l-g~~~i~~dd~ 34 (223)
T 2xb4_A 2 NILIFGPNGSGKGTQGNLVKDKY-SLAHIESGGI 34 (223)
T ss_dssp EEEEECCTTSCHHHHHHHHHHHH-TCEEEEHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHh-CCeEEchHHH
Confidence 68999999999999999999877 3456666553
No 265
>2px0_A Flagellar biosynthesis protein FLHF; SRP GTPase, flagellum, protein transport, biosynthetic protein; HET: GNP; 3.00A {Bacillus subtilis} PDB: 2px3_A* 3syn_A*
Probab=95.70 E-value=0.0056 Score=63.55 Aligned_cols=24 Identities=29% Similarity=0.371 Sum_probs=22.7
Q ss_pred eEEEEECCCCCcHHHHHHHHHHhC
Q 006117 67 ILVGVAGPSGAGKTVFTEKVLNFM 90 (660)
Q Consensus 67 ~IIGI~GpSGSGKSTLak~L~~lL 90 (660)
.+|+|+|++||||||++..|++.+
T Consensus 106 ~vi~lvG~~GsGKTTl~~~LA~~l 129 (296)
T 2px0_A 106 KYIVLFGSTGAGKTTTLAKLAAIS 129 (296)
T ss_dssp SEEEEEESTTSSHHHHHHHHHHHH
T ss_pred cEEEEECCCCCCHHHHHHHHHHHH
Confidence 399999999999999999999987
No 266
>3m6a_A ATP-dependent protease LA 1; alpha, beta, ATP-binding, hydrolase, nucleotide-binding, Pro serine protease, stress response; HET: ADP; 3.40A {Bacillus subtilis} PDB: 1x37_A
Probab=95.69 E-value=0.0027 Score=71.22 Aligned_cols=47 Identities=19% Similarity=0.389 Sum_probs=37.2
Q ss_pred EEEEecceeeccCCcceEEEEECCCCCcHHHHHHHHHHhC-CCceEEEecCc
Q 006117 51 IVIRACQLLAQKNHGIILVGVAGPSGAGKTVFTEKVLNFM-PSIAVITMDNY 101 (660)
Q Consensus 51 ~vL~~Isl~i~~ge~~~IIGI~GpSGSGKSTLak~L~~lL-p~~g~I~lDg~ 101 (660)
.+++++++.+ ++. +++|.||+|+||||++++|++.+ +..+.+.+.+.
T Consensus 97 ~~l~~~~~~~-~g~---~vll~Gp~GtGKTtlar~ia~~l~~~~~~i~~~~~ 144 (543)
T 3m6a_A 97 LAVQKLTKSL-KGP---ILCLAGPPGVGKTSLAKSIAKSLGRKFVRISLGGV 144 (543)
T ss_dssp HHHHHHSSSC-CSC---EEEEESSSSSSHHHHHHHHHHHHTCEEEEECCCC-
T ss_pred HHHHHhcccC-CCC---EEEEECCCCCCHHHHHHHHHHhcCCCeEEEEeccc
Confidence 4566667666 566 99999999999999999999998 55677776664
No 267
>1w1w_A Structural maintenance of chromosome 1; cohesin, chromosome segregation, cell adhesion, kleisin, MIT cell cycle; HET: ATG; 2.90A {Saccharomyces cerevisiae} SCOP: c.37.1.12
Probab=95.68 E-value=0.0066 Score=65.65 Aligned_cols=29 Identities=17% Similarity=0.418 Sum_probs=25.8
Q ss_pred eeccCCcceEEEEECCCCCcHHHHHHHHHHhC
Q 006117 59 LAQKNHGIILVGVAGPSGAGKTVFTEKVLNFM 90 (660)
Q Consensus 59 ~i~~ge~~~IIGI~GpSGSGKSTLak~L~~lL 90 (660)
.+..++ +++|+|||||||||++++|..++
T Consensus 22 ~~~~~~---~~~i~G~nG~GKstll~ai~~~~ 50 (430)
T 1w1w_A 22 GFGESN---FTSIIGPNGSGKSNMMDAISFVL 50 (430)
T ss_dssp ECTTCS---EEEEECSTTSSHHHHHHHHHHHT
T ss_pred EecCCC---EEEEECCCCCCHHHHHHHHHhhh
Confidence 345567 99999999999999999999998
No 268
>1ak2_A Adenylate kinase isoenzyme-2; nucleoside monophosphate kinase, phosphotransferase; 1.92A {Bos taurus} SCOP: c.37.1.1 g.41.2.1 PDB: 2ak2_A 2c9y_A*
Probab=95.65 E-value=0.0053 Score=60.49 Aligned_cols=36 Identities=19% Similarity=0.300 Sum_probs=29.0
Q ss_pred cceEEEEECCCCCcHHHHHHHHHHhCCCceEEEecCc
Q 006117 65 GIILVGVAGPSGAGKTVFTEKVLNFMPSIAVITMDNY 101 (660)
Q Consensus 65 ~~~IIGI~GpSGSGKSTLak~L~~lLp~~g~I~lDg~ 101 (660)
++..|.|.|+.||||||+++.|+..+ +...++.|+.
T Consensus 15 ~~~~I~l~G~~GsGKsT~a~~La~~l-~~~~i~~d~l 50 (233)
T 1ak2_A 15 KGVRAVLLGPPGAGKGTQAPKLAKNF-CVCHLATGDM 50 (233)
T ss_dssp CCCEEEEECCTTSSHHHHHHHHHHHH-TCEEEEHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHh-CCceecHHHH
Confidence 34589999999999999999999987 3456666543
No 269
>3umf_A Adenylate kinase; rossmann fold, transferase; 2.05A {Schistosoma mansoni}
Probab=95.61 E-value=0.0056 Score=61.00 Aligned_cols=43 Identities=21% Similarity=0.267 Sum_probs=30.5
Q ss_pred ceeeccCCcceEEEEECCCCCcHHHHHHHHHHhCCCceEEEecC
Q 006117 57 QLLAQKNHGIILVGVAGPSGAGKTVFTEKVLNFMPSIAVITMDN 100 (660)
Q Consensus 57 sl~i~~ge~~~IIGI~GpSGSGKSTLak~L~~lLp~~g~I~lDg 100 (660)
...-++-.++.+|.|.||+||||+|.++.|+..+ +...|+.++
T Consensus 20 ~~~~~~~~k~kiI~llGpPGsGKgTqa~~L~~~~-g~~hIstGd 62 (217)
T 3umf_A 20 HMTDQKLAKAKVIFVLGGPGSGKGTQCEKLVQKF-HFNHLSSGD 62 (217)
T ss_dssp ----CCTTSCEEEEEECCTTCCHHHHHHHHHHHH-CCEEECHHH
T ss_pred cccchhccCCcEEEEECCCCCCHHHHHHHHHHHH-CCceEcHHH
Confidence 3344455566799999999999999999999987 344555443
No 270
>2www_A Methylmalonic aciduria type A protein, mitochondrial; transport protein, nucleotide-binding; HET: GDP 2PE; 2.64A {Homo sapiens}
Probab=95.45 E-value=0.0066 Score=64.29 Aligned_cols=25 Identities=40% Similarity=0.728 Sum_probs=23.3
Q ss_pred ceEEEEECCCCCcHHHHHHHHHHhC
Q 006117 66 IILVGVAGPSGAGKTVFTEKVLNFM 90 (660)
Q Consensus 66 ~~IIGI~GpSGSGKSTLak~L~~lL 90 (660)
..+|+|+|++|||||||++.|.+.+
T Consensus 74 ~~~v~lvG~pgaGKSTLln~L~~~~ 98 (349)
T 2www_A 74 AFRVGLSGPPGAGKSTFIEYFGKML 98 (349)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHHHH
T ss_pred ceEEEEEcCCCCCHHHHHHHHHHHh
Confidence 5699999999999999999999876
No 271
>3eph_A TRNA isopentenyltransferase; transferase, alternative initiation, ATP-binding, cytoplasm, mitochondrion, nucleotide-binding, nucleus; 2.95A {Saccharomyces cerevisiae} PDB: 3epj_A 3epk_A* 3epl_A*
Probab=95.42 E-value=0.0088 Score=65.13 Aligned_cols=35 Identities=23% Similarity=0.344 Sum_probs=30.1
Q ss_pred ceEEEEECCCCCcHHHHHHHHHHhCCCceEEEecCc
Q 006117 66 IILVGVAGPSGAGKTVFTEKVLNFMPSIAVITMDNY 101 (660)
Q Consensus 66 ~~IIGI~GpSGSGKSTLak~L~~lLp~~g~I~lDg~ 101 (660)
+.+|+|+||+|||||||+..|+..++ ...|+.|..
T Consensus 2 ~~~i~i~GptgsGKttla~~La~~~~-~~iis~Ds~ 36 (409)
T 3eph_A 2 KKVIVIAGTTGVGKSQLSIQLAQKFN-GEVINSDSM 36 (409)
T ss_dssp CEEEEEEECSSSSHHHHHHHHHHHHT-EEEEECCTT
T ss_pred CcEEEEECcchhhHHHHHHHHHHHCC-CeEeecCcc
Confidence 35899999999999999999999884 457888873
No 272
>1f2t_A RAD50 ABC-ATPase; DNA double-strand break repair, replication; 1.60A {Pyrococcus furiosus} SCOP: c.37.1.12 PDB: 1f2u_A* 1us8_A*
Probab=95.39 E-value=0.0086 Score=55.65 Aligned_cols=23 Identities=22% Similarity=0.426 Sum_probs=21.1
Q ss_pred EEEEECCCCCcHHHHHHHHHHhC
Q 006117 68 LVGVAGPSGAGKTVFTEKVLNFM 90 (660)
Q Consensus 68 IIGI~GpSGSGKSTLak~L~~lL 90 (660)
+.+|+|||||||||++.+|.-.+
T Consensus 25 ~~~I~G~NGsGKStil~Ai~~~l 47 (149)
T 1f2t_A 25 INLIIGQNGSGKSSLLDAILVGL 47 (149)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHH
T ss_pred eEEEECCCCCCHHHHHHHHHHHH
Confidence 88999999999999999998655
No 273
>1sxj_C Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=95.38 E-value=0.0019 Score=67.30 Aligned_cols=42 Identities=21% Similarity=0.194 Sum_probs=35.0
Q ss_pred CceEEEEecceeeccCCcceEEEEECCCCCcHHHHHHHHHHhC
Q 006117 48 GFFIVIRACQLLAQKNHGIILVGVAGPSGAGKTVFTEKVLNFM 90 (660)
Q Consensus 48 g~~~vL~~Isl~i~~ge~~~IIGI~GpSGSGKSTLak~L~~lL 90 (660)
|...+++.++..+..|+-+. +.+.||+|+||||+++++++.+
T Consensus 29 g~~~~~~~L~~~i~~g~~~~-~ll~Gp~G~GKTtla~~la~~l 70 (340)
T 1sxj_C 29 GQNEVITTVRKFVDEGKLPH-LLFYGPPGTGKTSTIVALAREI 70 (340)
T ss_dssp SCHHHHHHHHHHHHTTCCCC-EEEECSSSSSHHHHHHHHHHHH
T ss_pred CcHHHHHHHHHHHhcCCCce-EEEECCCCCCHHHHHHHHHHHH
Confidence 44556788888888887333 8999999999999999999987
No 274
>3hr8_A Protein RECA; alpha and beta proteins (A/B, A+B), ATP-binding, cytoplasm, damage, DNA recombination, DNA repair, DNA-binding; 1.95A {Thermotoga maritima}
Probab=95.38 E-value=0.01 Score=63.50 Aligned_cols=39 Identities=15% Similarity=0.198 Sum_probs=29.7
Q ss_pred eccCCcceEEEEECCCCCcHHHHHHHHHHhC-C-CceEEEecCc
Q 006117 60 AQKNHGIILVGVAGPSGAGKTVFTEKVLNFM-P-SIAVITMDNY 101 (660)
Q Consensus 60 i~~ge~~~IIGI~GpSGSGKSTLak~L~~lL-p-~~g~I~lDg~ 101 (660)
+++|. ++.|.||+|||||||+..++..+ + +...+.+|..
T Consensus 58 i~~G~---i~~I~GppGsGKSTLal~la~~~~~~gg~VlyId~E 98 (356)
T 3hr8_A 58 YPRGR---IVEIFGQESSGKTTLALHAIAEAQKMGGVAAFIDAE 98 (356)
T ss_dssp EETTE---EEEEEESTTSSHHHHHHHHHHHHHHTTCCEEEEESS
T ss_pred ccCCc---EEEEECCCCCCHHHHHHHHHHHHHhcCCeEEEEecc
Confidence 56677 99999999999999999999876 2 2224555543
No 275
>2wji_A Ferrous iron transport protein B homolog; membrane G-proteins, cell membrane, ION transport, transmembrane; HET: GNP; 1.90A {Methanocaldococcus jannaschii} PDB: 2wjj_A* 2wjh_A*
Probab=95.27 E-value=0.0094 Score=54.84 Aligned_cols=24 Identities=13% Similarity=0.189 Sum_probs=21.7
Q ss_pred ceEEEEECCCCCcHHHHHHHHHHh
Q 006117 66 IILVGVAGPSGAGKTVFTEKVLNF 89 (660)
Q Consensus 66 ~~IIGI~GpSGSGKSTLak~L~~l 89 (660)
...|+|+|++|+|||||++.|.+.
T Consensus 3 ~~~v~lvG~~gvGKStL~~~l~~~ 26 (165)
T 2wji_A 3 SYEIALIGNPNVGKSTIFNALTGE 26 (165)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHCC
T ss_pred ccEEEEECCCCCCHHHHHHHHhCC
Confidence 357999999999999999999875
No 276
>3lda_A DNA repair protein RAD51; DNA binding protein, ATP-binding, DNA damage, DNA recombinat repair, nucleotide-binding; HET: DNA; 2.50A {Saccharomyces cerevisiae} PDB: 1szp_A*
Probab=95.26 E-value=0.0098 Score=64.47 Aligned_cols=40 Identities=13% Similarity=0.177 Sum_probs=30.5
Q ss_pred eeccCCcceEEEEECCCCCcHHHHHHHHHH--hCC------CceEEEecCc
Q 006117 59 LAQKNHGIILVGVAGPSGAGKTVFTEKVLN--FMP------SIAVITMDNY 101 (660)
Q Consensus 59 ~i~~ge~~~IIGI~GpSGSGKSTLak~L~~--lLp------~~g~I~lDg~ 101 (660)
-+++|+ ++.|+|++|||||||++.|+. .+| ..+.+.+++.
T Consensus 174 GI~~Ge---i~~I~G~sGsGKTTLl~~la~~~~~p~~~Gg~~~~viyid~E 221 (400)
T 3lda_A 174 GVETGS---ITELFGEFRTGKSQLCHTLAVTCQIPLDIGGGEGKCLYIDTE 221 (400)
T ss_dssp SEETTS---EEEEEESTTSSHHHHHHHHHHHTTSCGGGTCCSSEEEEEESS
T ss_pred CcCCCc---EEEEEcCCCCChHHHHHHHHHHhccCcccCCCCCcEEEEeCC
Confidence 367788 999999999999999997653 333 2447777765
No 277
>2dhr_A FTSH; AAA+ protein, hexameric Zn metalloprotease, hydrolase; HET: ADP; 3.90A {Thermus thermophilus}
Probab=95.12 E-value=0.0095 Score=66.40 Aligned_cols=44 Identities=25% Similarity=0.290 Sum_probs=34.3
Q ss_pred EEEecceeeccCCcceEEEEECCCCCcHHHHHHHHHHhCCCceEEEecCc
Q 006117 52 VIRACQLLAQKNHGIILVGVAGPSGAGKTVFTEKVLNFMPSIAVITMDNY 101 (660)
Q Consensus 52 vL~~Isl~i~~ge~~~IIGI~GpSGSGKSTLak~L~~lLp~~g~I~lDg~ 101 (660)
+++++++.+++| +.|.||+|+|||||+++|++.+ ..+.+.+++.
T Consensus 55 ~~~~lg~~ip~G-----vLL~GppGtGKTtLaraIa~~~-~~~~i~i~g~ 98 (499)
T 2dhr_A 55 RFHEMGARIPKG-----VLLVGPPGVGKTHLARAVAGEA-RVPFITASGS 98 (499)
T ss_dssp GTTTTSCCCCSE-----EEEECSSSSSHHHHHHHHHHHT-TCCEEEEEGG
T ss_pred hhhhccCCCCce-----EEEECCCCCCHHHHHHHHHHHh-CCCEEEEehh
Confidence 345666666544 8899999999999999999998 4667777654
No 278
>2wjg_A FEOB, ferrous iron transport protein B homolog; membrane G-proteins, cell membrane, ION transport, transmembrane; HET: GDP; 2.20A {Methanocaldococcus jannaschii}
Probab=95.11 E-value=0.012 Score=54.66 Aligned_cols=24 Identities=13% Similarity=0.189 Sum_probs=21.8
Q ss_pred ceEEEEECCCCCcHHHHHHHHHHh
Q 006117 66 IILVGVAGPSGAGKTVFTEKVLNF 89 (660)
Q Consensus 66 ~~IIGI~GpSGSGKSTLak~L~~l 89 (660)
++.|+|+|++|+|||||++.|.+.
T Consensus 7 ~~~i~lvG~~gvGKStL~~~l~~~ 30 (188)
T 2wjg_A 7 SYEIALIGNPNVGKSTIFNALTGE 30 (188)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHTT
T ss_pred CCEEEEECCCCCCHHHHHHHHhCC
Confidence 468999999999999999999874
No 279
>3cf0_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD, CDC48, ATP-binding, lipid-binding, nucle binding, nucleus, phosphoprotein, transport; HET: ADP; 3.00A {Mus musculus}
Probab=95.05 E-value=0.017 Score=59.40 Aligned_cols=32 Identities=28% Similarity=0.425 Sum_probs=27.6
Q ss_pred EEEEECCCCCcHHHHHHHHHHhCCCceEEEecC
Q 006117 68 LVGVAGPSGAGKTVFTEKVLNFMPSIAVITMDN 100 (660)
Q Consensus 68 IIGI~GpSGSGKSTLak~L~~lLp~~g~I~lDg 100 (660)
.|.|.||+|+||||++++|+..+ ....+.+++
T Consensus 51 ~vLL~Gp~GtGKT~la~ala~~~-~~~~i~v~~ 82 (301)
T 3cf0_A 51 GVLFYGPPGCGKTLLAKAIANEC-QANFISIKG 82 (301)
T ss_dssp EEEEECSSSSSHHHHHHHHHHHT-TCEEEEECH
T ss_pred eEEEECCCCcCHHHHHHHHHHHh-CCCEEEEEh
Confidence 79999999999999999999998 456666664
No 280
>2vf7_A UVRA2, excinuclease ABC, subunit A.; DNA-binding protein, nucleotide-binding, zinc-binding domain, SOS response, metal-binding; HET: ADP; 2.30A {Deinococcus radiodurans} PDB: 2vf8_A*
Probab=95.05 E-value=0.0092 Score=70.49 Aligned_cols=29 Identities=24% Similarity=0.421 Sum_probs=27.7
Q ss_pred EEecceeeccCCcceEEEEECCCCCcHHHHHH
Q 006117 53 IRACQLLAQKNHGIILVGVAGPSGAGKTVFTE 84 (660)
Q Consensus 53 L~~Isl~i~~ge~~~IIGI~GpSGSGKSTLak 84 (660)
|++|++.++.+. +++|+|.||||||||+-
T Consensus 26 Lkni~v~iP~~~---l~viTGvSGSGKSSLaf 54 (842)
T 2vf7_A 26 LKDISVKVPRDA---LVVFTGVSGSGKSSLAF 54 (842)
T ss_dssp CCSEEEEEESSS---EEEEESSTTSSHHHHHT
T ss_pred CCCeeEEecCCC---EEEEECCCCCCHHHHHH
Confidence 899999999999 99999999999999983
No 281
>1p5z_B DCK, deoxycytidine kinase; nucleoside kinase, P-loop, ARAC, cytarabine, transferase; HET: AR3 ADP; 1.60A {Homo sapiens} SCOP: c.37.1.1 PDB: 1p60_A* 1p61_B* 1p62_B* 2a7q_A* 2qrn_A* 2qro_A* 3exk_A* 3hp1_A* 2no7_A* 2no1_A* 2no6_A* 2no0_A* 2no9_A* 2noa_A* 2zi5_A* 2zi4_A* 2zi6_A* 2zi7_B* 2zia_A* 3kfx_A* ...
Probab=95.02 E-value=0.01 Score=59.49 Aligned_cols=33 Identities=21% Similarity=0.357 Sum_probs=26.5
Q ss_pred CcceEEEEECCCCCcHHHHHHHHHHhCCCceEE
Q 006117 64 HGIILVGVAGPSGAGKTVFTEKVLNFMPSIAVI 96 (660)
Q Consensus 64 e~~~IIGI~GpSGSGKSTLak~L~~lLp~~g~I 96 (660)
.++.+|.|.|+.||||||+++.|+..+.+...+
T Consensus 22 ~~~~~I~ieG~~GsGKST~~~~L~~~l~~~~~i 54 (263)
T 1p5z_B 22 TRIKKISIEGNIAAGKSTFVNILKQLCEDWEVV 54 (263)
T ss_dssp -CCEEEEEECSTTSSHHHHHTTTGGGCTTEEEE
T ss_pred cCceEEEEECCCCCCHHHHHHHHHHhcCCCEEE
Confidence 445799999999999999999999998443333
No 282
>1lv7_A FTSH; alpha/beta domain, four helix bundle, hydrolase; 1.50A {Escherichia coli} SCOP: c.37.1.20
Probab=94.89 E-value=0.017 Score=57.32 Aligned_cols=32 Identities=25% Similarity=0.450 Sum_probs=25.4
Q ss_pred EEEEECCCCCcHHHHHHHHHHhCCCceEEEecC
Q 006117 68 LVGVAGPSGAGKTVFTEKVLNFMPSIAVITMDN 100 (660)
Q Consensus 68 IIGI~GpSGSGKSTLak~L~~lLp~~g~I~lDg 100 (660)
-+.|.||+|+||||++++|++.++ ...+.+++
T Consensus 47 ~vll~G~~GtGKT~la~~la~~~~-~~~~~i~~ 78 (257)
T 1lv7_A 47 GVLMVGPPGTGKTLLAKAIAGEAK-VPFFTISG 78 (257)
T ss_dssp EEEEECCTTSCHHHHHHHHHHHHT-CCEEEECS
T ss_pred eEEEECcCCCCHHHHHHHHHHHcC-CCEEEEeH
Confidence 488999999999999999999872 22455554
No 283
>1e69_A Chromosome segregation SMC protein; structural maintenance of chromosomes, coiled coil; 3.1A {Thermotoga maritima} SCOP: c.37.1.12
Probab=94.89 E-value=0.012 Score=61.30 Aligned_cols=32 Identities=16% Similarity=0.370 Sum_probs=25.7
Q ss_pred ecceeeccCCcceEEEEECCCCCcHHHHHHHHHHhC
Q 006117 55 ACQLLAQKNHGIILVGVAGPSGAGKTVFTEKVLNFM 90 (660)
Q Consensus 55 ~Isl~i~~ge~~~IIGI~GpSGSGKSTLak~L~~lL 90 (660)
.+++.+.+ + +.+|+|+|||||||++.+|..++
T Consensus 17 ~~~l~~~~-g---~~~i~G~NGsGKS~ll~ai~~ll 48 (322)
T 1e69_A 17 PSLIGFSD-R---VTAIVGPNGSGKSNIIDAIKWVF 48 (322)
T ss_dssp CEEEECCS-S---EEEEECCTTTCSTHHHHHHHHTS
T ss_pred CeEEecCC-C---cEEEECCCCCcHHHHHHHHHHHh
Confidence 34455433 3 89999999999999999999876
No 284
>1m2o_B GTP-binding protein SAR1, GTP binding protein; zinc-finger, beta barrel, VWA domain, gelsolin domain,; HET: GNP; 2.50A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 2qtv_B*
Probab=94.87 E-value=0.012 Score=55.58 Aligned_cols=35 Identities=23% Similarity=0.180 Sum_probs=20.6
Q ss_pred EEEEecceeeccCCcceEEEEECCCCCcHHHHHHHHHHh
Q 006117 51 IVIRACQLLAQKNHGIILVGVAGPSGAGKTVFTEKVLNF 89 (660)
Q Consensus 51 ~vL~~Isl~i~~ge~~~IIGI~GpSGSGKSTLak~L~~l 89 (660)
.+++++++..+.. .|+|+|++|+|||||++.+.+.
T Consensus 12 ~~l~~~~~~~~~~----ki~~vG~~~vGKSsli~~l~~~ 46 (190)
T 1m2o_B 12 DVLASLGLWNKHG----KLLFLGLDNAGKTTLLHMLKND 46 (190)
T ss_dssp ------------C----EEEEEESTTSSHHHHHHHHHHS
T ss_pred HHHHHhhccCCcc----EEEEECCCCCCHHHHHHHHhcC
Confidence 3567777765443 6899999999999999999874
No 285
>2gj8_A MNME, tRNA modification GTPase TRME; G-domain dimer, alpha-beta-sandwich, hydrolase; HET: GDP; 1.70A {Escherichia coli BL21} SCOP: c.37.1.8 PDB: 2gj9_A* 2gja_A* 1rfl_A
Probab=94.85 E-value=0.014 Score=54.40 Aligned_cols=24 Identities=25% Similarity=0.275 Sum_probs=21.7
Q ss_pred ceEEEEECCCCCcHHHHHHHHHHh
Q 006117 66 IILVGVAGPSGAGKTVFTEKVLNF 89 (660)
Q Consensus 66 ~~IIGI~GpSGSGKSTLak~L~~l 89 (660)
...|+|+|++|+|||||++.|.+.
T Consensus 4 ~~ki~ivG~~g~GKStLl~~l~~~ 27 (172)
T 2gj8_A 4 GMKVVIAGRPNAGKSSLLNALAGR 27 (172)
T ss_dssp CEEEEEEESTTSSHHHHHHHHHTS
T ss_pred CCEEEEECCCCCCHHHHHHHHhCC
Confidence 358999999999999999999875
No 286
>2ffh_A Protein (FFH); SRP54, signal recognition particle, GTPase, M domain, RNA-binding, signal sequence-binding, helix-turn-helix, protein targeting; 3.20A {Thermus aquaticus} SCOP: a.24.13.1 a.36.1.1 c.37.1.10 PDB: 2iy3_A
Probab=94.83 E-value=0.015 Score=63.61 Aligned_cols=32 Identities=28% Similarity=0.267 Sum_probs=27.2
Q ss_pred EecceeeccCCcceEEEEECCCCCcHHHHHHHHHHhC
Q 006117 54 RACQLLAQKNHGIILVGVAGPSGAGKTVFTEKVLNFM 90 (660)
Q Consensus 54 ~~Isl~i~~ge~~~IIGI~GpSGSGKSTLak~L~~lL 90 (660)
+++++. ++ .+|+|+|++||||||++..|+..+
T Consensus 91 ~~i~l~--~~---~vi~i~G~~GsGKTT~~~~LA~~l 122 (425)
T 2ffh_A 91 RLPVLK--DR---NLWFLVGLQGSGKTTTAAKLALYY 122 (425)
T ss_dssp CCCCCC--SS---EEEEEECCTTSSHHHHHHHHHHHH
T ss_pred ccccCC--CC---eEEEEECCCCCCHHHHHHHHHHHH
Confidence 556665 34 499999999999999999999998
No 287
>3sr0_A Adenylate kinase; phosphoryl transfer analogue, ALF4, transferase (phosphotran phosphoryl transfer, nucleotide-binding; HET: ADP AMP; 1.56A {Aquifex aeolicus} PDB: 2rh5_A 2rgx_A*
Probab=94.70 E-value=0.015 Score=57.22 Aligned_cols=32 Identities=22% Similarity=0.389 Sum_probs=26.4
Q ss_pred EEEEECCCCCcHHHHHHHHHHhCCCceEEEecC
Q 006117 68 LVGVAGPSGAGKTVFTEKVLNFMPSIAVITMDN 100 (660)
Q Consensus 68 IIGI~GpSGSGKSTLak~L~~lLp~~g~I~lDg 100 (660)
+|.|.||+||||+|.++.|+..+ +...|+.++
T Consensus 2 ~Iil~GpPGsGKgTqa~~La~~~-g~~~istGd 33 (206)
T 3sr0_A 2 ILVFLGPPGAGKGTQAKRLAKEK-GFVHISTGD 33 (206)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHH-CCEEEEHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHH-CCeEEcHHH
Confidence 57799999999999999999987 455666554
No 288
>2ygr_A Uvrabc system protein A; hydrolase, nucleotide excision repair; 3.40A {Mycobacterium tuberculosis} PDB: 3zqj_A
Probab=94.58 E-value=0.013 Score=70.21 Aligned_cols=28 Identities=29% Similarity=0.522 Sum_probs=27.2
Q ss_pred EEecceeeccCCcceEEEEECCCCCcHHHHH
Q 006117 53 IRACQLLAQKNHGIILVGVAGPSGAGKTVFT 83 (660)
Q Consensus 53 L~~Isl~i~~ge~~~IIGI~GpSGSGKSTLa 83 (660)
|+||++.++.++ +|.|+|.||||||||+
T Consensus 36 Lkni~v~iP~~~---lvv~tG~SGSGKSSLa 63 (993)
T 2ygr_A 36 LRSVDLDLPRDA---LIVFTGLSGSGKSSLA 63 (993)
T ss_dssp CCSEEEEEESSS---EEEEEESTTSSHHHHH
T ss_pred cCceeeeccCCC---EEEEECCCCCcHHHHH
Confidence 899999999999 9999999999999997
No 289
>2r6f_A Excinuclease ABC subunit A; UVRA, nucleotide excision repair, DNA repair, ABC ATPase, at cassette, DNA damage, DNA excision; HET: ADP; 3.20A {Geobacillus stearothermophilus} PDB: 3uwx_A
Probab=94.55 E-value=0.013 Score=69.98 Aligned_cols=28 Identities=25% Similarity=0.481 Sum_probs=27.1
Q ss_pred EEecceeeccCCcceEEEEECCCCCcHHHHH
Q 006117 53 IRACQLLAQKNHGIILVGVAGPSGAGKTVFT 83 (660)
Q Consensus 53 L~~Isl~i~~ge~~~IIGI~GpSGSGKSTLa 83 (660)
|+||++.++.++ +|.|+|.||||||||+
T Consensus 34 Lkni~v~iP~~~---lvv~tG~SGSGKSSLa 61 (972)
T 2r6f_A 34 LKNIDVEIPRGK---LVVLTGLSGSGKSSLA 61 (972)
T ss_dssp CCSEEEEEETTS---EEEEEESTTSSHHHHH
T ss_pred CCceeeeccCCc---EEEEECCCCCCHHHHH
Confidence 899999999999 9999999999999986
No 290
>3pih_A Uvrabc system protein A; hydrolase, ABC ATPase, DNA repair, nucleotide excision repai hydrolase-DNA complex; HET: DNA; 2.90A {Thermotoga maritima}
Probab=94.55 E-value=0.011 Score=70.43 Aligned_cols=28 Identities=32% Similarity=0.545 Sum_probs=27.3
Q ss_pred EEecceeeccCCcceEEEEECCCCCcHHHHH
Q 006117 53 IRACQLLAQKNHGIILVGVAGPSGAGKTVFT 83 (660)
Q Consensus 53 L~~Isl~i~~ge~~~IIGI~GpSGSGKSTLa 83 (660)
|+||++.+++++ +|.|+|.||||||||+
T Consensus 14 Lkni~~~ip~~~---l~v~tG~SGSGKSsLa 41 (916)
T 3pih_A 14 LKNITVRIPKNR---LVVITGVSGSGKSSLA 41 (916)
T ss_dssp CCSBCCEEETTS---EEEEEESTTSSSHHHH
T ss_pred cCcceeccCCCc---EEEEECCCCCcHHHHH
Confidence 799999999999 9999999999999998
No 291
>3kl4_A SRP54, signal recognition 54 kDa protein; signal recognition particle, SRP, SRP54, FFH, signal sequenc peptide; 3.50A {Sulfolobus solfataricus} PDB: 1qzx_A 1qzw_A
Probab=94.50 E-value=0.026 Score=61.91 Aligned_cols=36 Identities=22% Similarity=0.376 Sum_probs=28.2
Q ss_pred cceEEEEECCCCCcHHHHHHHHHHhC-C---CceEEEecC
Q 006117 65 GIILVGVAGPSGAGKTVFTEKVLNFM-P---SIAVITMDN 100 (660)
Q Consensus 65 ~~~IIGI~GpSGSGKSTLak~L~~lL-p---~~g~I~lDg 100 (660)
++.+|+++|++||||||++..|+..+ + ....+..|-
T Consensus 96 ~~~vI~lvG~~GsGKTTt~~kLA~~l~~~G~kVllv~~D~ 135 (433)
T 3kl4_A 96 LPFIIMLVGVQGSGKTTTAGKLAYFYKKRGYKVGLVAADV 135 (433)
T ss_dssp SSEEEEECCCTTSCHHHHHHHHHHHHHHTTCCEEEEEECC
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEEecCc
Confidence 46799999999999999999999887 2 334445553
No 292
>1j8m_F SRP54, signal recognition 54 kDa protein; signaling protein; 2.00A {Acidianus ambivalens} SCOP: a.24.13.1 c.37.1.10 PDB: 1j8y_F
Probab=94.46 E-value=0.012 Score=61.07 Aligned_cols=31 Identities=23% Similarity=0.244 Sum_probs=26.2
Q ss_pred cceeeccCCcceEEEEECCCCCcHHHHHHHHHHhC
Q 006117 56 CQLLAQKNHGIILVGVAGPSGAGKTVFTEKVLNFM 90 (660)
Q Consensus 56 Isl~i~~ge~~~IIGI~GpSGSGKSTLak~L~~lL 90 (660)
+++..+ + .+++++|++|+||||++..|+..+
T Consensus 92 i~~~~~-~---~vi~i~G~~G~GKTT~~~~la~~~ 122 (297)
T 1j8m_F 92 VIPDKI-P---YVIMLVGVQGTGKTTTAGKLAYFY 122 (297)
T ss_dssp CSCSSS-S---EEEEEECSSCSSTTHHHHHHHHHH
T ss_pred cccCCC-C---eEEEEECCCCCCHHHHHHHHHHHH
Confidence 666543 4 499999999999999999999887
No 293
>2zr9_A Protein RECA, recombinase A; recombination, RECA mutants, DNA-repair, ATP-binding, DNA DA recombination, DNA repair, DNA-binding; HET: DTP; 2.50A {Mycobacterium smegmatis str} PDB: 2zr0_A* 2zra_A* 2zrb_A 2zrm_A* 1ubc_A* 1ubf_A* 1ubg_A* 1ube_A* 2g88_A* 2odw_A* 2oe2_A 2oep_A* 2oes_A 2ofo_A 2zr7_A 2odn_A* 2zrn_A 2zro_A* 2zrp_A* 2zre_A* ...
Probab=94.37 E-value=0.031 Score=59.30 Aligned_cols=28 Identities=18% Similarity=0.380 Sum_probs=24.5
Q ss_pred eccCCcceEEEEECCCCCcHHHHHHHHHHhC
Q 006117 60 AQKNHGIILVGVAGPSGAGKTVFTEKVLNFM 90 (660)
Q Consensus 60 i~~ge~~~IIGI~GpSGSGKSTLak~L~~lL 90 (660)
+++|. ++.|.|++|||||||+..++...
T Consensus 58 l~~G~---iv~I~G~pGsGKTtLal~la~~~ 85 (349)
T 2zr9_A 58 LPRGR---VIEIYGPESSGKTTVALHAVANA 85 (349)
T ss_dssp EETTS---EEEEEESTTSSHHHHHHHHHHHH
T ss_pred ccCCe---EEEEECCCCCCHHHHHHHHHHHH
Confidence 56777 99999999999999999888664
No 294
>2zej_A Dardarin, leucine-rich repeat kinase 2; parkinson'S disease, LRRK2, ROC, GTPase, ROCO, ATP-B disease mutation, GTP-binding, GTPase activation; HET: GDP; 2.00A {Homo sapiens} PDB: 3d6t_B*
Probab=94.35 E-value=0.017 Score=54.03 Aligned_cols=23 Identities=22% Similarity=0.525 Sum_probs=20.9
Q ss_pred eEEEEECCCCCcHHHHHHHHHHh
Q 006117 67 ILVGVAGPSGAGKTVFTEKVLNF 89 (660)
Q Consensus 67 ~IIGI~GpSGSGKSTLak~L~~l 89 (660)
+-|+|+|++|+|||||++.+.+.
T Consensus 3 ~kv~ivG~~gvGKStLl~~l~~~ 25 (184)
T 2zej_A 3 MKLMIVGNTGSGKTTLLQQLMKT 25 (184)
T ss_dssp CEEEEESCTTSSHHHHHHHHTCC
T ss_pred eEEEEECCCCCCHHHHHHHHhcC
Confidence 46899999999999999999874
No 295
>3qks_A DNA double-strand break repair RAD50 ATPase; RECA-like fold, coiled-coils, ATPase, exonuclease, endonucle binding, DNA binding; HET: DNA; 2.10A {Pyrococcus furiosus} PDB: 3qkr_A*
Probab=94.32 E-value=0.025 Score=55.02 Aligned_cols=23 Identities=22% Similarity=0.426 Sum_probs=21.4
Q ss_pred EEEEECCCCCcHHHHHHHHHHhC
Q 006117 68 LVGVAGPSGAGKTVFTEKVLNFM 90 (660)
Q Consensus 68 IIGI~GpSGSGKSTLak~L~~lL 90 (660)
+.+|+|+|||||||++.+|.-.+
T Consensus 25 ~~~I~G~NgsGKStil~ai~~~l 47 (203)
T 3qks_A 25 INLIIGQNGSGKSSLLDAILVGL 47 (203)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHH
T ss_pred eEEEEcCCCCCHHHHHHHHHHHh
Confidence 89999999999999999998766
No 296
>3qkt_A DNA double-strand break repair RAD50 ATPase; RECA-like fold, coiled-coils, ATP binding, DNA bindi MRE11, replication; HET: DNA ANP; 1.90A {Pyrococcus furiosus} PDB: 3qku_A* 1ii8_A 3qks_B* 3qkr_B* 1ii8_B
Probab=94.24 E-value=0.025 Score=59.20 Aligned_cols=23 Identities=22% Similarity=0.426 Sum_probs=20.3
Q ss_pred EEEEECCCCCcHHHHHHHHHHhC
Q 006117 68 LVGVAGPSGAGKTVFTEKVLNFM 90 (660)
Q Consensus 68 IIGI~GpSGSGKSTLak~L~~lL 90 (660)
+.+|+|||||||||++.+|.-.+
T Consensus 25 ~~~i~G~NGsGKS~lleAi~~~l 47 (339)
T 3qkt_A 25 INLIIGQNGSGKSSLLDAILVGL 47 (339)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHH
T ss_pred eEEEECCCCCCHHHHHHHHHHHh
Confidence 88999999999999999886543
No 297
>3v9p_A DTMP kinase, thymidylate kinase; ssgcid, STRU genomics, seattle structural genomics center for infectious transferase; 1.90A {Burkholderia thailandensis}
Probab=94.20 E-value=0.017 Score=57.91 Aligned_cols=38 Identities=18% Similarity=0.117 Sum_probs=20.8
Q ss_pred EEecceeeccCCcceEEEEECCCCCcHHHHHHHHHHhC
Q 006117 53 IRACQLLAQKNHGIILVGVAGPSGAGKTVFTEKVLNFM 90 (660)
Q Consensus 53 L~~Isl~i~~ge~~~IIGI~GpSGSGKSTLak~L~~lL 90 (660)
|.++++.-..-.+..+|.|.|++||||||+++.|+..+
T Consensus 12 ~~~~~~~~~~m~~g~~I~~eG~~GsGKsT~~~~l~~~l 49 (227)
T 3v9p_A 12 LEAQTQGPGSMARGKFITFEGIDGAGKTTHLQWFCDRL 49 (227)
T ss_dssp -----------CCCCEEEEECCC---CHHHHHHHHHHH
T ss_pred HHHHHhcCccccCCeEEEEECCCCCCHHHHHHHHHHHH
Confidence 44554433322334599999999999999999999887
No 298
>1z2a_A RAS-related protein RAB-23; RAB GTPase, vesicular trafficking, protein transport; HET: GDP; 1.90A {Mus musculus} SCOP: c.37.1.8 PDB: 1z22_A*
Probab=94.17 E-value=0.032 Score=50.26 Aligned_cols=25 Identities=20% Similarity=0.202 Sum_probs=22.1
Q ss_pred cceEEEEECCCCCcHHHHHHHHHHh
Q 006117 65 GIILVGVAGPSGAGKTVFTEKVLNF 89 (660)
Q Consensus 65 ~~~IIGI~GpSGSGKSTLak~L~~l 89 (660)
..+-|+|+|++|+|||||++.|.+.
T Consensus 4 ~~~~i~v~G~~~~GKssl~~~l~~~ 28 (168)
T 1z2a_A 4 VAIKMVVVGNGAVGKSSMIQRYCKG 28 (168)
T ss_dssp CEEEEEEECSTTSSHHHHHHHHHHC
T ss_pred eeEEEEEECcCCCCHHHHHHHHHcC
Confidence 3567999999999999999999875
No 299
>1ega_A Protein (GTP-binding protein ERA); GTPase, RNA-binding, RAS-like, hydrolase; 2.40A {Escherichia coli} SCOP: c.37.1.8 d.52.3.1 PDB: 1x1l_X 3ieu_A* 1x18_X
Probab=94.16 E-value=0.02 Score=59.08 Aligned_cols=23 Identities=22% Similarity=0.445 Sum_probs=21.4
Q ss_pred eEEEEECCCCCcHHHHHHHHHHh
Q 006117 67 ILVGVAGPSGAGKTVFTEKVLNF 89 (660)
Q Consensus 67 ~IIGI~GpSGSGKSTLak~L~~l 89 (660)
.+|+|+|++|+|||||++.|.+.
T Consensus 9 ~~VaIvG~~nvGKSTLln~L~g~ 31 (301)
T 1ega_A 9 GFIAIVGRPNVGKSTLLNKLLGQ 31 (301)
T ss_dssp EEEEEECSSSSSHHHHHHHHHTC
T ss_pred CEEEEECCCCCCHHHHHHHHHCC
Confidence 38999999999999999999986
No 300
>1kao_A RAP2A; GTP-binding protein, small G protein, GDP, RAS; HET: GDP; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2rap_A* 3rap_R*
Probab=94.14 E-value=0.033 Score=49.82 Aligned_cols=24 Identities=29% Similarity=0.329 Sum_probs=21.2
Q ss_pred ceEEEEECCCCCcHHHHHHHHHHh
Q 006117 66 IILVGVAGPSGAGKTVFTEKVLNF 89 (660)
Q Consensus 66 ~~IIGI~GpSGSGKSTLak~L~~l 89 (660)
.+-|+|+|++|+|||||++.+.+.
T Consensus 3 ~~~i~v~G~~~~GKSsli~~l~~~ 26 (167)
T 1kao_A 3 EYKVVVLGSGGVGKSALTVQFVTG 26 (167)
T ss_dssp EEEEEEECCTTSSHHHHHHHHHHS
T ss_pred EEEEEEECCCCCCHHHHHHHHHcC
Confidence 457999999999999999998864
No 301
>3lxx_A GTPase IMAP family member 4; structural genomics consortium, SGC, coiled coil, GTP- binding, nucleotide-binding, immune system; HET: GDP; 2.15A {Homo sapiens}
Probab=94.08 E-value=0.028 Score=55.20 Aligned_cols=27 Identities=22% Similarity=0.378 Sum_probs=23.3
Q ss_pred CcceEEEEECCCCCcHHHHHHHHHHhC
Q 006117 64 HGIILVGVAGPSGAGKTVFTEKVLNFM 90 (660)
Q Consensus 64 e~~~IIGI~GpSGSGKSTLak~L~~lL 90 (660)
...+.|+|+|++|+|||||++.|.+..
T Consensus 27 ~~~~~i~lvG~~g~GKStlin~l~g~~ 53 (239)
T 3lxx_A 27 NSQLRIVLVGKTGAGKSATGNSILGRK 53 (239)
T ss_dssp -CEEEEEEECCTTSSHHHHHHHHHTSC
T ss_pred CCceEEEEECCCCCCHHHHHHHHcCCC
Confidence 345789999999999999999999864
No 302
>2ged_A SR-beta, signal recognition particle receptor beta subunit; protein transport, G protein, proline isomerization, circular permutation; 2.20A {Saccharomyces cerevisiae}
Probab=94.05 E-value=0.032 Score=52.06 Aligned_cols=27 Identities=22% Similarity=0.176 Sum_probs=23.4
Q ss_pred CcceEEEEECCCCCcHHHHHHHHHHhC
Q 006117 64 HGIILVGVAGPSGAGKTVFTEKVLNFM 90 (660)
Q Consensus 64 e~~~IIGI~GpSGSGKSTLak~L~~lL 90 (660)
.+.+.|+|+|++|+|||||++.|.+..
T Consensus 46 ~~~~~i~vvG~~g~GKSsll~~l~~~~ 72 (193)
T 2ged_A 46 SYQPSIIIAGPQNSGKTSLLTLLTTDS 72 (193)
T ss_dssp CCCCEEEEECCTTSSHHHHHHHHHHSS
T ss_pred CCCCEEEEECCCCCCHHHHHHHHhcCC
Confidence 345689999999999999999998864
No 303
>2ce2_X GTPase HRAS; signaling protein, guanine nucleotide binding protein, fluor membrane, lipoprotein, palmitate, prenylation; HET: GDP XY2; 1.0A {Homo sapiens} PDB: 2cl0_X* 2cl6_X* 2cl7_X* 2clc_X* 2evw_X* 2cld_X* 1aa9_A* 1ioz_A* 1q21_A* 6q21_A* 3k9l_A* 3k9n_A* 1ctq_A* 1bkd_R 1crp_A* 1crq_A* 1crr_A* 121p_A* 1gnp_A* 1gnq_A* ...
Probab=94.01 E-value=0.031 Score=49.79 Aligned_cols=23 Identities=26% Similarity=0.437 Sum_probs=20.8
Q ss_pred eEEEEECCCCCcHHHHHHHHHHh
Q 006117 67 ILVGVAGPSGAGKTVFTEKVLNF 89 (660)
Q Consensus 67 ~IIGI~GpSGSGKSTLak~L~~l 89 (660)
+-|+++|+.|+|||||++.+.+.
T Consensus 4 ~~i~v~G~~~~GKssl~~~l~~~ 26 (166)
T 2ce2_X 4 YKLVVVGAGGVGKSALTIQLIQN 26 (166)
T ss_dssp EEEEEEESTTSSHHHHHHHHHHS
T ss_pred eEEEEECCCCCCHHHHHHHHHhC
Confidence 56899999999999999999875
No 304
>3bc1_A RAS-related protein RAB-27A; RAB27, GTPase, RAB, signaling protein, GDPNP, SLP2A, exophil GTP-binding, lipoprotein, membrane, methylation; HET: GNP; 1.80A {Mus musculus} PDB: 2iey_A* 2if0_A* 2zet_A*
Probab=94.01 E-value=0.037 Score=50.94 Aligned_cols=27 Identities=26% Similarity=0.158 Sum_probs=23.3
Q ss_pred CCcceEEEEECCCCCcHHHHHHHHHHh
Q 006117 63 NHGIILVGVAGPSGAGKTVFTEKVLNF 89 (660)
Q Consensus 63 ge~~~IIGI~GpSGSGKSTLak~L~~l 89 (660)
.+..+-|+|+|++|+|||||++.+.+.
T Consensus 8 ~~~~~ki~v~G~~~~GKSsli~~l~~~ 34 (195)
T 3bc1_A 8 YDYLIKFLALGDSGVGKTSVLYQYTDG 34 (195)
T ss_dssp CSEEEEEEEECSTTSSHHHHHHHHHHS
T ss_pred cceeEEEEEECCCCCCHHHHHHHHhcC
Confidence 345678999999999999999999874
No 305
>4dsu_A GTPase KRAS, isoform 2B; small G-protein, signaling, hydrolase; HET: GDP; 1.70A {Homo sapiens} PDB: 4dsn_A* 4dst_A* 4dso_A*
Probab=94.00 E-value=0.035 Score=51.09 Aligned_cols=25 Identities=24% Similarity=0.353 Sum_probs=22.3
Q ss_pred cceEEEEECCCCCcHHHHHHHHHHh
Q 006117 65 GIILVGVAGPSGAGKTVFTEKVLNF 89 (660)
Q Consensus 65 ~~~IIGI~GpSGSGKSTLak~L~~l 89 (660)
+.+-|+|+|++|+|||||++.|.+.
T Consensus 3 ~~~ki~v~G~~~~GKSsli~~l~~~ 27 (189)
T 4dsu_A 3 TEYKLVVVGADGVGKSALTIQLIQN 27 (189)
T ss_dssp EEEEEEEECCTTSSHHHHHHHHHHS
T ss_pred cEEEEEEECCCCCCHHHHHHHHHhC
Confidence 4568999999999999999999875
No 306
>1u8z_A RAS-related protein RAL-A; GNP, GTP, GMPPNP, GPPNHP, GDP, GTPase, signaling protein; HET: GDP; 1.50A {Saguinus oedipus} SCOP: c.37.1.8 PDB: 1u8y_A* 1u90_A* 1uad_A* 1zc3_A* 1zc4_A* 2kwi_A* 2ke5_A*
Probab=93.96 E-value=0.037 Score=49.55 Aligned_cols=24 Identities=25% Similarity=0.346 Sum_probs=21.4
Q ss_pred ceEEEEECCCCCcHHHHHHHHHHh
Q 006117 66 IILVGVAGPSGAGKTVFTEKVLNF 89 (660)
Q Consensus 66 ~~IIGI~GpSGSGKSTLak~L~~l 89 (660)
.+-|+|+|+.|+|||||++.+.+.
T Consensus 4 ~~~i~v~G~~~~GKssl~~~l~~~ 27 (168)
T 1u8z_A 4 LHKVIMVGSGGVGKSALTLQFMYD 27 (168)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHHS
T ss_pred eEEEEEECCCCCCHHHHHHHHHhC
Confidence 457999999999999999999875
No 307
>1m8p_A Sulfate adenylyltransferase; rossmann fold, phosphosulfate binding, T-state; HET: PPS; 2.60A {Penicillium chrysogenum} SCOP: b.122.1.3 c.26.1.5 c.37.1.15 PDB: 1i2d_A*
Probab=93.91 E-value=0.023 Score=64.34 Aligned_cols=40 Identities=10% Similarity=0.044 Sum_probs=30.4
Q ss_pred cCCcceEEEEECCCCCcHHHHHHHHHHhCCC---ceEEEecCc
Q 006117 62 KNHGIILVGVAGPSGAGKTVFTEKVLNFMPS---IAVITMDNY 101 (660)
Q Consensus 62 ~ge~~~IIGI~GpSGSGKSTLak~L~~lLp~---~g~I~lDg~ 101 (660)
.+.++.+|.|+|.+||||||+++.|+..+.. ...+.+|+.
T Consensus 392 ~gq~~~~I~l~GlsGSGKSTiA~~La~~L~~~G~~~~~~lD~D 434 (573)
T 1m8p_A 392 RATQGFTIFLTGYMNSGKDAIARALQVTLNQQGGRSVSLLLGD 434 (573)
T ss_dssp TTTCCEEEEEECSTTSSHHHHHHHHHHHHHHHCSSCEEEEEHH
T ss_pred ccccceEEEeecCCCCCHHHHHHHHHHHhcccCCceEEEECcH
Confidence 3455689999999999999999999998732 224555543
No 308
>2fn4_A P23, RAS-related protein R-RAS; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 1.65A {Homo sapiens} SCOP: c.37.1.8 PDB: 2ery_A*
Probab=93.90 E-value=0.038 Score=50.33 Aligned_cols=26 Identities=23% Similarity=0.305 Sum_probs=22.8
Q ss_pred CcceEEEEECCCCCcHHHHHHHHHHh
Q 006117 64 HGIILVGVAGPSGAGKTVFTEKVLNF 89 (660)
Q Consensus 64 e~~~IIGI~GpSGSGKSTLak~L~~l 89 (660)
.+.+-|+|+|.+|+|||||++.+.+.
T Consensus 7 ~~~~~i~v~G~~~~GKssli~~l~~~ 32 (181)
T 2fn4_A 7 SETHKLVVVGGGGVGKSALTIQFIQS 32 (181)
T ss_dssp SCEEEEEEEECTTSSHHHHHHHHHHS
T ss_pred CCceEEEEECCCCCCHHHHHHHHHhC
Confidence 34578999999999999999999875
No 309
>1ypw_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD, CDC48; HET: ADP ANP; 3.50A {Mus musculus} PDB: 1oz4_A* 1yq0_A* 1yqi_A* 1r7r_A* 3cf2_A* 3cf1_A* 3cf3_A*
Probab=93.89 E-value=0.036 Score=65.04 Aligned_cols=37 Identities=22% Similarity=0.306 Sum_probs=29.0
Q ss_pred eccCCcceEEEEECCCCCcHHHHHHHHHHhCCCceEEEecC
Q 006117 60 AQKNHGIILVGVAGPSGAGKTVFTEKVLNFMPSIAVITMDN 100 (660)
Q Consensus 60 i~~ge~~~IIGI~GpSGSGKSTLak~L~~lLp~~g~I~lDg 100 (660)
+..+. .|.|.||+|+||||++++|++.++ ...+.+++
T Consensus 235 i~~~~---~vLL~Gp~GtGKTtLarala~~l~-~~~i~v~~ 271 (806)
T 1ypw_A 235 VKPPR---GILLYGPPGTGKTLIARAVANETG-AFFFLING 271 (806)
T ss_dssp CCCCC---EEEECSCTTSSHHHHHHHHHHTTT-CEEEEEEH
T ss_pred CCCCC---eEEEECcCCCCHHHHHHHHHHHcC-CcEEEEEc
Confidence 44455 899999999999999999999983 33455554
No 310
>1mky_A Probable GTP-binding protein ENGA; GTPase, DER, KH-domain, tandem G-domains, ligand binding protein; HET: GDP; 1.90A {Thermotoga maritima} SCOP: c.37.1.8 c.37.1.8 d.52.5.1
Probab=93.88 E-value=0.047 Score=59.20 Aligned_cols=26 Identities=27% Similarity=0.413 Sum_probs=23.3
Q ss_pred cceEEEEECCCCCcHHHHHHHHHHhC
Q 006117 65 GIILVGVAGPSGAGKTVFTEKVLNFM 90 (660)
Q Consensus 65 ~~~IIGI~GpSGSGKSTLak~L~~lL 90 (660)
.++.|+|+|++|+|||||++.|.+..
T Consensus 179 ~~~kvaivG~~gvGKSTLln~l~g~~ 204 (439)
T 1mky_A 179 DAIKVAIVGRPNVGKSTLFNAILNKE 204 (439)
T ss_dssp SCEEEEEECSTTSSHHHHHHHHHTST
T ss_pred cCceEEEECCCCCCHHHHHHHHhCCc
Confidence 45789999999999999999999863
No 311
>4edh_A DTMP kinase, thymidylate kinase; structural genomics, PSI-biology; HET: TMP ADP; 1.32A {Pseudomonas aeruginosa PAO1} PDB: 4e5u_A* 4esh_A* 4gmd_A* 3uwk_A* 3uwo_A* 3uxm_A*
Probab=93.88 E-value=0.031 Score=55.18 Aligned_cols=25 Identities=28% Similarity=0.501 Sum_probs=23.0
Q ss_pred ceEEEEECCCCCcHHHHHHHHHHhC
Q 006117 66 IILVGVAGPSGAGKTVFTEKVLNFM 90 (660)
Q Consensus 66 ~~IIGI~GpSGSGKSTLak~L~~lL 90 (660)
..+|.|.|++||||||+++.|+..+
T Consensus 6 g~~i~~eG~~gsGKsT~~~~l~~~l 30 (213)
T 4edh_A 6 GLFVTLEGPEGAGKSTNRDYLAERL 30 (213)
T ss_dssp CEEEEEECSTTSSHHHHHHHHHHHH
T ss_pred ceEEEEEcCCCCCHHHHHHHHHHHH
Confidence 3499999999999999999999987
No 312
>1ky3_A GTP-binding protein YPT7P; vesicular traffic, GTP hydrolysis, YPT/RAB protein, endocytosis, hydrolase, endocytosis/exocytosis complex; HET: GDP; 1.35A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1ky2_A*
Probab=93.85 E-value=0.04 Score=50.28 Aligned_cols=25 Identities=36% Similarity=0.488 Sum_probs=22.2
Q ss_pred cceEEEEECCCCCcHHHHHHHHHHh
Q 006117 65 GIILVGVAGPSGAGKTVFTEKVLNF 89 (660)
Q Consensus 65 ~~~IIGI~GpSGSGKSTLak~L~~l 89 (660)
+.+-|+|+|++|+|||||++.+.+.
T Consensus 7 ~~~~i~v~G~~~~GKSsli~~l~~~ 31 (182)
T 1ky3_A 7 NILKVIILGDSGVGKTSLMHRYVND 31 (182)
T ss_dssp CEEEEEEECCTTSSHHHHHHHHHHS
T ss_pred ceEEEEEECCCCCCHHHHHHHHHhC
Confidence 4568999999999999999998875
No 313
>3t34_A Dynamin-related protein 1A, linker, dynamin-relat 1A; dynamin-like protein 1A, GTPase, membrane fission, motor Pro; HET: GDP; 2.40A {Arabidopsis thaliana} PDB: 3t35_A*
Probab=93.84 E-value=0.023 Score=59.80 Aligned_cols=33 Identities=15% Similarity=0.169 Sum_probs=25.7
Q ss_pred EEEEecceeeccCCcceEEEEECCCCCcHHHHHHHHHHh
Q 006117 51 IVIRACQLLAQKNHGIILVGVAGPSGAGKTVFTEKVLNF 89 (660)
Q Consensus 51 ~vL~~Isl~i~~ge~~~IIGI~GpSGSGKSTLak~L~~l 89 (660)
.+|+++++.++ .|+|+|.+|||||||++.|.+.
T Consensus 25 ~~l~~i~~~lp------~I~vvG~~~sGKSSLln~l~g~ 57 (360)
T 3t34_A 25 SALPTLWDSLP------AIAVVGGQSSGKSSVLESIVGK 57 (360)
T ss_dssp CCC----CCCC------EEEEECBTTSSHHHHHHHHHTS
T ss_pred cccccccccCC------EEEEECCCCCcHHHHHHHHhCC
Confidence 46788888776 7999999999999999999994
No 314
>3p32_A Probable GTPase RV1496/MT1543; structural genomics, seattle structural genomics center for infectious disease, ssgcid, MEAB, MMAA; HET: GDP PGE; 1.90A {Mycobacterium tuberculosis} PDB: 3md0_A* 4gt1_A* 3nxs_A* 3tk1_A*
Probab=93.83 E-value=0.054 Score=57.15 Aligned_cols=39 Identities=26% Similarity=0.406 Sum_probs=30.0
Q ss_pred ccCCcceEEEEECCCCCcHHHHHHHHHHhC----CCceEEEec
Q 006117 61 QKNHGIILVGVAGPSGAGKTVFTEKVLNFM----PSIAVITMD 99 (660)
Q Consensus 61 ~~ge~~~IIGI~GpSGSGKSTLak~L~~lL----p~~g~I~lD 99 (660)
+...+..+|+|+|+.|+||||++..|+..+ ...+.+..|
T Consensus 74 ~~~~~~~~I~i~G~~G~GKSTl~~~L~~~l~~~g~kV~vi~~D 116 (355)
T 3p32_A 74 PDSGNAHRVGITGVPGVGKSTAIEALGMHLIERGHRVAVLAVD 116 (355)
T ss_dssp GGCCCSEEEEEECCTTSSHHHHHHHHHHHHHTTTCCEEEEEEC
T ss_pred hhcCCceEEEEECCCCCCHHHHHHHHHHHHHhCCCceEEEecC
Confidence 334456799999999999999999998775 245556655
No 315
>1c1y_A RAS-related protein RAP-1A; GTP-binding proteins, protein-protein complex, effectors, signaling protein; HET: GTP; 1.90A {Homo sapiens} SCOP: c.37.1.8 PDB: 3kuc_A* 1gua_A* 3cf6_R* 3brw_D*
Probab=93.79 E-value=0.041 Score=49.42 Aligned_cols=24 Identities=25% Similarity=0.310 Sum_probs=21.3
Q ss_pred ceEEEEECCCCCcHHHHHHHHHHh
Q 006117 66 IILVGVAGPSGAGKTVFTEKVLNF 89 (660)
Q Consensus 66 ~~IIGI~GpSGSGKSTLak~L~~l 89 (660)
.+-|+|+|.+|+|||||++.+.+.
T Consensus 3 ~~ki~v~G~~~~GKssli~~l~~~ 26 (167)
T 1c1y_A 3 EYKLVVLGSGGVGKSALTVQFVQG 26 (167)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHHC
T ss_pred eeEEEEECCCCCCHHHHHHHHHcC
Confidence 357999999999999999999864
No 316
>1wms_A RAB-9, RAB9, RAS-related protein RAB-9A; GTPase, protein transport; HET: GDP; 1.25A {Homo sapiens} SCOP: c.37.1.8 PDB: 1s8f_A* 1yzl_A* 2ocb_A*
Probab=93.76 E-value=0.041 Score=50.18 Aligned_cols=25 Identities=20% Similarity=0.375 Sum_probs=22.1
Q ss_pred cceEEEEECCCCCcHHHHHHHHHHh
Q 006117 65 GIILVGVAGPSGAGKTVFTEKVLNF 89 (660)
Q Consensus 65 ~~~IIGI~GpSGSGKSTLak~L~~l 89 (660)
..+-|+|+|++|+|||||++.+.+.
T Consensus 6 ~~~~i~v~G~~~~GKSsli~~l~~~ 30 (177)
T 1wms_A 6 SLFKVILLGDGGVGKSSLMNRYVTN 30 (177)
T ss_dssp EEEEEEEECCTTSSHHHHHHHHHHS
T ss_pred ceeEEEEECCCCCCHHHHHHHHHcC
Confidence 4567999999999999999999865
No 317
>3k53_A Ferrous iron transport protein B; GTPase fold, helical bundle, G-protein, prokaryote, GTP-BIND nucleotide-binding, metal transport; 2.70A {Pyrococcus furiosus}
Probab=93.75 E-value=0.031 Score=56.30 Aligned_cols=25 Identities=20% Similarity=0.329 Sum_probs=22.2
Q ss_pred ceEEEEECCCCCcHHHHHHHHHHhC
Q 006117 66 IILVGVAGPSGAGKTVFTEKVLNFM 90 (660)
Q Consensus 66 ~~IIGI~GpSGSGKSTLak~L~~lL 90 (660)
.+.|+|+|++|||||||++.|.+..
T Consensus 3 ~~~i~lvG~~g~GKTTL~n~l~g~~ 27 (271)
T 3k53_A 3 LKTVALVGNPNVGKTTIFNALTGLR 27 (271)
T ss_dssp CEEEEEEECSSSSHHHHHHHHHTTC
T ss_pred eeEEEEECCCCCCHHHHHHHHhCCC
Confidence 3579999999999999999998763
No 318
>1z08_A RAS-related protein RAB-21; RAB GTPase, vesicular trafficking, protein transport; HET: GNP; 1.80A {Homo sapiens} SCOP: c.37.1.8 PDB: 2ot3_B 1yzu_A* 1z0i_A 1yzt_A*
Probab=93.74 E-value=0.043 Score=49.60 Aligned_cols=25 Identities=20% Similarity=0.093 Sum_probs=22.2
Q ss_pred cceEEEEECCCCCcHHHHHHHHHHh
Q 006117 65 GIILVGVAGPSGAGKTVFTEKVLNF 89 (660)
Q Consensus 65 ~~~IIGI~GpSGSGKSTLak~L~~l 89 (660)
..+-|+|+|++|+|||||++.+.+.
T Consensus 5 ~~~~i~v~G~~~~GKssli~~l~~~ 29 (170)
T 1z08_A 5 YSFKVVLLGEGCVGKTSLVLRYCEN 29 (170)
T ss_dssp EEEEEEEECCTTSCHHHHHHHHHHC
T ss_pred cceEEEEECcCCCCHHHHHHHHHcC
Confidence 4568999999999999999999875
No 319
>2dyk_A GTP-binding protein; GTPase, ribosome-binding protein, structural genomics; HET: GDP; 1.96A {Thermus thermophilus}
Probab=93.71 E-value=0.045 Score=49.00 Aligned_cols=24 Identities=21% Similarity=0.292 Sum_probs=21.1
Q ss_pred eEEEEECCCCCcHHHHHHHHHHhC
Q 006117 67 ILVGVAGPSGAGKTVFTEKVLNFM 90 (660)
Q Consensus 67 ~IIGI~GpSGSGKSTLak~L~~lL 90 (660)
+-|+|+|+.|+|||||++.+.+..
T Consensus 2 ~ki~v~G~~~~GKSsli~~l~~~~ 25 (161)
T 2dyk_A 2 HKVVIVGRPNVGKSSLFNRLLKKR 25 (161)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHCC
T ss_pred CEEEEECCCCCCHHHHHHHHhCCC
Confidence 468999999999999999998753
No 320
>3con_A GTPase NRAS; structural genomics consortium, SGC, GDP, oncogene, disease mutation, golgi apparatus, GTP-binding, lipoprotein membrane, methylation; HET: GDP; 1.65A {Homo sapiens} PDB: 2pmx_A* 3gft_A* 4q21_A*
Probab=93.70 E-value=0.042 Score=51.09 Aligned_cols=27 Identities=22% Similarity=0.315 Sum_probs=22.7
Q ss_pred CCcceEEEEECCCCCcHHHHHHHHHHh
Q 006117 63 NHGIILVGVAGPSGAGKTVFTEKVLNF 89 (660)
Q Consensus 63 ge~~~IIGI~GpSGSGKSTLak~L~~l 89 (660)
+-+.+-|+|+|..|+|||||++.|.+.
T Consensus 18 ~~~~~ki~vvG~~~~GKSsli~~l~~~ 44 (190)
T 3con_A 18 GMTEYKLVVVGAGGVGKSALTIQLIQN 44 (190)
T ss_dssp -CEEEEEEEECSTTSSHHHHHHHHHHS
T ss_pred ccceeEEEEECcCCCCHHHHHHHHHcC
Confidence 334578999999999999999999875
No 321
>1ek0_A Protein (GTP-binding protein YPT51); vesicular traffic, GTP hydrolysis, YPT/RAB protein, endocytosis, hydrolase; HET: MHO GNP GDP; 1.48A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=93.68 E-value=0.042 Score=49.38 Aligned_cols=24 Identities=17% Similarity=0.250 Sum_probs=21.2
Q ss_pred ceEEEEECCCCCcHHHHHHHHHHh
Q 006117 66 IILVGVAGPSGAGKTVFTEKVLNF 89 (660)
Q Consensus 66 ~~IIGI~GpSGSGKSTLak~L~~l 89 (660)
.+-|+|+|++|+|||||++.+.+.
T Consensus 3 ~~~i~v~G~~~~GKssli~~l~~~ 26 (170)
T 1ek0_A 3 SIKLVLLGEAAVGKSSIVLRFVSN 26 (170)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHHS
T ss_pred eEEEEEECCCCCCHHHHHHHHhcC
Confidence 356899999999999999999865
No 322
>3dm5_A SRP54, signal recognition 54 kDa protein; protein-RNA, signal recognition particle, SRP-GTPase, protein targeting, cytoplasm, GTP-binding; HET: GDP; 2.51A {Pyrococcus furiosus}
Probab=93.68 E-value=0.049 Score=59.89 Aligned_cols=37 Identities=22% Similarity=0.428 Sum_probs=28.7
Q ss_pred cceEEEEECCCCCcHHHHHHHHHHhC-C---CceEEEecCc
Q 006117 65 GIILVGVAGPSGAGKTVFTEKVLNFM-P---SIAVITMDNY 101 (660)
Q Consensus 65 ~~~IIGI~GpSGSGKSTLak~L~~lL-p---~~g~I~lDg~ 101 (660)
+|.+|.++|++|+||||++..|+..+ . ....+..|-+
T Consensus 99 ~p~vIlivG~~G~GKTTt~~kLA~~l~~~G~kVllv~~D~~ 139 (443)
T 3dm5_A 99 KPTILLMVGIQGSGKTTTVAKLARYFQKRGYKVGVVCSDTW 139 (443)
T ss_dssp SSEEEEEECCTTSSHHHHHHHHHHHHHTTTCCEEEEECCCS
T ss_pred CCeEEEEECcCCCCHHHHHHHHHHHHHHCCCeEEEEeCCCc
Confidence 57899999999999999999999876 1 3444555543
No 323
>1z0j_A RAB-22, RAS-related protein RAB-22A; RAB GTPase, RAB22 GTPase, rabenosyn, endosomal trafficking; HET: GTP; 1.32A {Mus musculus} SCOP: c.37.1.8 PDB: 1yvd_A*
Probab=93.64 E-value=0.044 Score=49.39 Aligned_cols=26 Identities=19% Similarity=0.247 Sum_probs=22.4
Q ss_pred cceEEEEECCCCCcHHHHHHHHHHhC
Q 006117 65 GIILVGVAGPSGAGKTVFTEKVLNFM 90 (660)
Q Consensus 65 ~~~IIGI~GpSGSGKSTLak~L~~lL 90 (660)
+.+-|+|+|++|+|||||++.+.+.-
T Consensus 5 ~~~~i~v~G~~~~GKSsli~~l~~~~ 30 (170)
T 1z0j_A 5 RELKVCLLGDTGVGKSSIMWRFVEDS 30 (170)
T ss_dssp EEEEEEEECCTTSSHHHHHHHHHHSC
T ss_pred cceEEEEECcCCCCHHHHHHHHHcCC
Confidence 34679999999999999999998763
No 324
>2wsm_A Hydrogenase expression/formation protein (HYPB); metal binding protein; 2.30A {Archaeoglobus fulgidus}
Probab=93.63 E-value=0.039 Score=52.89 Aligned_cols=26 Identities=31% Similarity=0.663 Sum_probs=22.9
Q ss_pred cceEEEEECCCCCcHHHHHHHHHHhC
Q 006117 65 GIILVGVAGPSGAGKTVFTEKVLNFM 90 (660)
Q Consensus 65 ~~~IIGI~GpSGSGKSTLak~L~~lL 90 (660)
+...|+|+|.+|+|||||++.|...+
T Consensus 29 ~~~~i~i~G~~g~GKTTl~~~l~~~~ 54 (221)
T 2wsm_A 29 GTVAVNIMGAIGSGKTLLIERTIERI 54 (221)
T ss_dssp TCEEEEEEECTTSCHHHHHHHHHHHH
T ss_pred CceEEEEEcCCCCCHHHHHHHHHHHh
Confidence 35689999999999999999998764
No 325
>3clv_A RAB5 protein, putative; malaria, GTPase, structural genomics, GTP-binding, nucleotide-binding, signaling protein; HET: GDP; 1.89A {Plasmodium falciparum}
Probab=93.63 E-value=0.052 Score=50.15 Aligned_cols=25 Identities=16% Similarity=0.134 Sum_probs=22.5
Q ss_pred cceEEEEECCCCCcHHHHHHHHHHh
Q 006117 65 GIILVGVAGPSGAGKTVFTEKVLNF 89 (660)
Q Consensus 65 ~~~IIGI~GpSGSGKSTLak~L~~l 89 (660)
..+-|+|+|+.|+|||||++.|.+.
T Consensus 6 ~~~ki~v~G~~~~GKSsli~~l~~~ 30 (208)
T 3clv_A 6 SSYKTVLLGESSVGKSSIVLRLTKD 30 (208)
T ss_dssp SSEEEEEECCTTSSHHHHHHHHHHS
T ss_pred cceEEEEECCCCCCHHHHHHHHHhC
Confidence 3567999999999999999999886
No 326
>2erx_A GTP-binding protein DI-RAS2; GTP hydrolysis, transport protein; HET: GDP; 1.65A {Homo sapiens} SCOP: c.37.1.8
Probab=93.62 E-value=0.042 Score=49.51 Aligned_cols=24 Identities=25% Similarity=0.307 Sum_probs=21.2
Q ss_pred ceEEEEECCCCCcHHHHHHHHHHh
Q 006117 66 IILVGVAGPSGAGKTVFTEKVLNF 89 (660)
Q Consensus 66 ~~IIGI~GpSGSGKSTLak~L~~l 89 (660)
.+-|+|+|+.|+|||||++.+.+.
T Consensus 3 ~~~i~v~G~~~~GKssli~~l~~~ 26 (172)
T 2erx_A 3 DYRVAVFGAGGVGKSSLVLRFVKG 26 (172)
T ss_dssp EEEEEEECCTTSSHHHHHHHHHTC
T ss_pred ceEEEEECCCCCCHHHHHHHHHcC
Confidence 357999999999999999999864
No 327
>2lkc_A Translation initiation factor IF-2; NMR {Geobacillus stearothermophilus} PDB: 2lkd_A*
Probab=93.62 E-value=0.039 Score=50.40 Aligned_cols=25 Identities=20% Similarity=0.251 Sum_probs=21.9
Q ss_pred cceEEEEECCCCCcHHHHHHHHHHh
Q 006117 65 GIILVGVAGPSGAGKTVFTEKVLNF 89 (660)
Q Consensus 65 ~~~IIGI~GpSGSGKSTLak~L~~l 89 (660)
+.+.|+|+|++|+|||||++.+.+.
T Consensus 7 ~~~~i~v~G~~~~GKssl~~~l~~~ 31 (178)
T 2lkc_A 7 RPPVVTIMGHVDHGKTTLLDAIRHS 31 (178)
T ss_dssp CCCEEEEESCTTTTHHHHHHHHHTT
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCC
Confidence 3468999999999999999999864
No 328
>1jbk_A CLPB protein; beta barrel, chaperone; 1.80A {Escherichia coli} SCOP: c.37.1.20
Probab=93.61 E-value=0.044 Score=50.07 Aligned_cols=23 Identities=26% Similarity=0.329 Sum_probs=21.1
Q ss_pred EEEEECCCCCcHHHHHHHHHHhC
Q 006117 68 LVGVAGPSGAGKTVFTEKVLNFM 90 (660)
Q Consensus 68 IIGI~GpSGSGKSTLak~L~~lL 90 (660)
.+.|.|++|+||||+++.++..+
T Consensus 45 ~~ll~G~~G~GKT~l~~~~~~~~ 67 (195)
T 1jbk_A 45 NPVLIGEPGVGKTAIVEGLAQRI 67 (195)
T ss_dssp EEEEECCTTSCHHHHHHHHHHHH
T ss_pred ceEEECCCCCCHHHHHHHHHHHH
Confidence 67899999999999999999876
No 329
>3b9p_A CG5977-PA, isoform A; AAA ATPase, ATP-binding, nucleotide-binding, hydrolase; 2.70A {Drosophila melanogaster}
Probab=93.59 E-value=0.059 Score=54.39 Aligned_cols=32 Identities=25% Similarity=0.358 Sum_probs=25.4
Q ss_pred eEEEEECCCCCcHHHHHHHHHHhCCCceEEEec
Q 006117 67 ILVGVAGPSGAGKTVFTEKVLNFMPSIAVITMD 99 (660)
Q Consensus 67 ~IIGI~GpSGSGKSTLak~L~~lLp~~g~I~lD 99 (660)
..+.|.||+|+||||+++.+++.+ ....+.++
T Consensus 55 ~~vll~Gp~GtGKT~la~~la~~~-~~~~~~i~ 86 (297)
T 3b9p_A 55 KGLLLFGPPGNGKTLLARAVATEC-SATFLNIS 86 (297)
T ss_dssp SEEEEESSSSSCHHHHHHHHHHHT-TCEEEEEE
T ss_pred CeEEEECcCCCCHHHHHHHHHHHh-CCCeEEee
Confidence 478999999999999999999987 23344443
No 330
>3lv8_A DTMP kinase, thymidylate kinase; structural genomics, in diseases, center for structural genomics of infectious DISE ATP-binding; HET: ADP TMP TYD; 1.80A {Vibrio cholerae o1 biovar eltor} PDB: 3n2i_A*
Probab=93.57 E-value=0.03 Score=56.35 Aligned_cols=25 Identities=24% Similarity=0.409 Sum_probs=23.1
Q ss_pred ceEEEEECCCCCcHHHHHHHHHHhC
Q 006117 66 IILVGVAGPSGAGKTVFTEKVLNFM 90 (660)
Q Consensus 66 ~~IIGI~GpSGSGKSTLak~L~~lL 90 (660)
+.+|.|.|++||||||+++.|+..+
T Consensus 27 ~~~i~~eG~~GsGKsT~~~~l~~~l 51 (236)
T 3lv8_A 27 AKFIVIEGLEGAGKSTAIQVVVETL 51 (236)
T ss_dssp CCEEEEEESTTSCHHHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHH
Confidence 4599999999999999999999887
No 331
>2oil_A CATX-8, RAS-related protein RAB-25; G-protein, GDP, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.30A {Homo sapiens}
Probab=93.56 E-value=0.05 Score=50.80 Aligned_cols=26 Identities=27% Similarity=0.307 Sum_probs=22.8
Q ss_pred CcceEEEEECCCCCcHHHHHHHHHHh
Q 006117 64 HGIILVGVAGPSGAGKTVFTEKVLNF 89 (660)
Q Consensus 64 e~~~IIGI~GpSGSGKSTLak~L~~l 89 (660)
+..+-|+|+|.+|+|||||++.|.+.
T Consensus 23 ~~~~ki~v~G~~~~GKSsLi~~l~~~ 48 (193)
T 2oil_A 23 NFVFKVVLIGESGVGKTNLLSRFTRN 48 (193)
T ss_dssp SEEEEEEEESSTTSSHHHHHHHHHHS
T ss_pred CcceEEEEECcCCCCHHHHHHHHhcC
Confidence 44568999999999999999999875
No 332
>1f6b_A SAR1; gtpases, N-terminal helix, Mg-containing complex, protein transport; HET: GDP; 1.70A {Cricetulus griseus} SCOP: c.37.1.8 PDB: 2fmx_A* 2fa9_A* 2gao_A*
Probab=93.49 E-value=0.0094 Score=56.82 Aligned_cols=34 Identities=21% Similarity=0.184 Sum_probs=26.2
Q ss_pred EEEEecceeeccCCcceEEEEECCCCCcHHHHHHHHHH
Q 006117 51 IVIRACQLLAQKNHGIILVGVAGPSGAGKTVFTEKVLN 88 (660)
Q Consensus 51 ~vL~~Isl~i~~ge~~~IIGI~GpSGSGKSTLak~L~~ 88 (660)
.+++++++..+. .-|+|+|++|+|||||++.+.+
T Consensus 14 ~~l~~~~~~~~~----~ki~lvG~~~vGKSsLi~~l~~ 47 (198)
T 1f6b_A 14 SVLQFLGLYKKT----GKLVFLGLDNAGKTTLLHMLKD 47 (198)
T ss_dssp HHHHHHTCTTCC----EEEEEEEETTSSHHHHHHHHSC
T ss_pred HHHHHhhccCCC----cEEEEECCCCCCHHHHHHHHhc
Confidence 356666665443 3589999999999999998864
No 333
>1upt_A ARL1, ADP-ribosylation factor-like protein 1; hydrolase/protein-binding, complex (GTPase/golgin), golgin-245, GRIP, golgin, GTPase, G-protein; HET: GTP; 1.7A {Homo sapiens} SCOP: c.37.1.8 PDB: 1r4a_A*
Probab=93.47 E-value=0.052 Score=49.09 Aligned_cols=25 Identities=24% Similarity=0.212 Sum_probs=21.8
Q ss_pred cceEEEEECCCCCcHHHHHHHHHHh
Q 006117 65 GIILVGVAGPSGAGKTVFTEKVLNF 89 (660)
Q Consensus 65 ~~~IIGI~GpSGSGKSTLak~L~~l 89 (660)
+.+-|+|+|++|+|||||++.+.+.
T Consensus 6 ~~~~i~v~G~~~~GKssl~~~l~~~ 30 (171)
T 1upt_A 6 REMRILILGLDGAGKTTILYRLQVG 30 (171)
T ss_dssp SCEEEEEECSTTSSHHHHHHHHHHS
T ss_pred CccEEEEECCCCCCHHHHHHHHhcC
Confidence 3568999999999999999999764
No 334
>2nzj_A GTP-binding protein REM 1; GDP/GTP binding, GTP hydrolysis, RAD and GEM like GTP protein 1, structural genomics; HET: GDP; 2.50A {Homo sapiens}
Probab=93.46 E-value=0.043 Score=49.84 Aligned_cols=24 Identities=25% Similarity=0.302 Sum_probs=21.4
Q ss_pred ceEEEEECCCCCcHHHHHHHHHHh
Q 006117 66 IILVGVAGPSGAGKTVFTEKVLNF 89 (660)
Q Consensus 66 ~~IIGI~GpSGSGKSTLak~L~~l 89 (660)
.+-|+|+|++|+|||||++.+.+.
T Consensus 4 ~~ki~i~G~~~vGKSsl~~~l~~~ 27 (175)
T 2nzj_A 4 LYRVVLLGDPGVGKTSLASLFAGK 27 (175)
T ss_dssp EEEEEEECCTTSSHHHHHHHHHCC
T ss_pred EEEEEEECCCCccHHHHHHHHhcC
Confidence 467999999999999999998764
No 335
>1x6v_B Bifunctional 3'-phosphoadenosine 5'- phosphosulfate synthethase 1; transferase, ATP sulfurylase, APS kinase, PAPS; HET: ADP; 1.75A {Homo sapiens} SCOP: b.122.1.3 c.26.1.5 c.37.1.4 PDB: 1xjq_B* 1xnj_B* 2qjf_A* 2ofx_A* 2ofw_A*
Probab=93.45 E-value=0.052 Score=62.18 Aligned_cols=38 Identities=32% Similarity=0.372 Sum_probs=30.9
Q ss_pred cceEEEEECCCCCcHHHHHHHHHHhCC--CceEEEecCcc
Q 006117 65 GIILVGVAGPSGAGKTVFTEKVLNFMP--SIAVITMDNYN 102 (660)
Q Consensus 65 ~~~IIGI~GpSGSGKSTLak~L~~lLp--~~g~I~lDg~~ 102 (660)
++.+|.|+|.+||||||+++.|+..+. +...+.+|+..
T Consensus 51 ~g~lIvLtGlsGSGKSTlAr~La~~L~~~G~~~v~lDgD~ 90 (630)
T 1x6v_B 51 RGCTVWLTGLSGAGKTTVSMALEEYLVCHGIPCYTLDGDN 90 (630)
T ss_dssp CCEEEEEECSTTSSHHHHHHHHHHHHHHTTCCEEEESHHH
T ss_pred CCCEEEEEeCCCCCHHHHHHHHHHHHHhcCCeEEEechHH
Confidence 567999999999999999999999872 34567777543
No 336
>1njg_A DNA polymerase III subunit gamma; rossman-like fold, AAA+ ATPase domains, sensor 1, sensor 2, transferase; HET: DNA; 2.20A {Escherichia coli} SCOP: c.37.1.20 PDB: 1njf_A*
Probab=93.42 E-value=0.04 Score=52.07 Aligned_cols=36 Identities=17% Similarity=0.004 Sum_probs=27.1
Q ss_pred ecceeeccCCcceEEEEECCCCCcHHHHHHHHHHhC
Q 006117 55 ACQLLAQKNHGIILVGVAGPSGAGKTVFTEKVLNFM 90 (660)
Q Consensus 55 ~Isl~i~~ge~~~IIGI~GpSGSGKSTLak~L~~lL 90 (660)
.+...+..+..+..+.|.|++|+||||+++.++..+
T Consensus 34 ~l~~~l~~~~~~~~~ll~G~~G~GKT~l~~~~~~~~ 69 (250)
T 1njg_A 34 ALANGLSLGRIHHAYLFSGTRGVGKTSIARLLAKGL 69 (250)
T ss_dssp HHHHHHHHTCCCSEEEEECSTTSCHHHHHHHHHHHH
T ss_pred HHHHHHHcCCCCeEEEEECCCCCCHHHHHHHHHHHh
Confidence 333334444444588999999999999999998876
No 337
>1r2q_A RAS-related protein RAB-5A; GTPase, GNP, atomic resolution, protein transport; HET: GNP; 1.05A {Homo sapiens} SCOP: c.37.1.8 PDB: 1n6h_A* 1tu4_A* 1tu3_A* 1n6k_A* 1n6i_A* 1n6l_A* 1n6o_A* 1n6p_A* 1n6n_A* 1n6r_A* 3mjh_A* 1z0d_A* 1huq_A* 2hei_A* 1z07_A*
Probab=93.41 E-value=0.05 Score=48.90 Aligned_cols=25 Identities=16% Similarity=0.171 Sum_probs=21.9
Q ss_pred cceEEEEECCCCCcHHHHHHHHHHh
Q 006117 65 GIILVGVAGPSGAGKTVFTEKVLNF 89 (660)
Q Consensus 65 ~~~IIGI~GpSGSGKSTLak~L~~l 89 (660)
+.+-|+|+|+.|+|||||++.+.+.
T Consensus 5 ~~~~i~v~G~~~~GKssli~~l~~~ 29 (170)
T 1r2q_A 5 CQFKLVLLGESAVGKSSLVLRFVKG 29 (170)
T ss_dssp EEEEEEEECSTTSSHHHHHHHHHHS
T ss_pred ceEEEEEECCCCCCHHHHHHHHHcC
Confidence 3467999999999999999999864
No 338
>2w58_A DNAI, primosome component (helicase loader); ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.50A {Geobacillus kaustophilus HTA426}
Probab=93.41 E-value=0.046 Score=51.95 Aligned_cols=24 Identities=25% Similarity=0.270 Sum_probs=22.0
Q ss_pred eEEEEECCCCCcHHHHHHHHHHhC
Q 006117 67 ILVGVAGPSGAGKTVFTEKVLNFM 90 (660)
Q Consensus 67 ~IIGI~GpSGSGKSTLak~L~~lL 90 (660)
..+.|.|++|+||||++++|+..+
T Consensus 55 ~~~~l~G~~GtGKT~la~~i~~~~ 78 (202)
T 2w58_A 55 KGLYLHGSFGVGKTYLLAAIANEL 78 (202)
T ss_dssp CEEEEECSTTSSHHHHHHHHHHHH
T ss_pred CeEEEECCCCCCHHHHHHHHHHHH
Confidence 478899999999999999999876
No 339
>3bos_A Putative DNA replication factor; P-loop containing nucleoside triphosphate hydrolases, struct genomics; HET: MSE CDP; 1.75A {Shewanella amazonensis} PDB: 3sc3_A
Probab=93.39 E-value=0.045 Score=52.45 Aligned_cols=24 Identities=17% Similarity=0.182 Sum_probs=22.0
Q ss_pred eEEEEECCCCCcHHHHHHHHHHhC
Q 006117 67 ILVGVAGPSGAGKTVFTEKVLNFM 90 (660)
Q Consensus 67 ~IIGI~GpSGSGKSTLak~L~~lL 90 (660)
..+.|.||+|+||||+++.++..+
T Consensus 53 ~~~ll~G~~G~GKT~la~~l~~~~ 76 (242)
T 3bos_A 53 QAIYLWGPVKSGRTHLIHAACARA 76 (242)
T ss_dssp SEEEEECSTTSSHHHHHHHHHHHH
T ss_pred CeEEEECCCCCCHHHHHHHHHHHH
Confidence 478899999999999999999876
No 340
>2qmh_A HPR kinase/phosphorylase; V267F mutation, ATP-binding, carbohydrate metabolism, magnesium, metal-binding, multifunctional enzyme; 2.60A {Lactobacillus casei} PDB: 1jb1_A 1kkl_A 1kkm_A*
Probab=93.39 E-value=0.058 Score=53.52 Aligned_cols=43 Identities=19% Similarity=0.142 Sum_probs=30.2
Q ss_pred EEEecceeeccCCcceEEEEECCCCCcHHHHHHHHHHhCCCceEEEecC
Q 006117 52 VIRACQLLAQKNHGIILVGVAGPSGAGKTVFTEKVLNFMPSIAVITMDN 100 (660)
Q Consensus 52 vL~~Isl~i~~ge~~~IIGI~GpSGSGKSTLak~L~~lLp~~g~I~lDg 100 (660)
.+++.-+.+ .+. .|.|+||+|||||||+..|+.... ..|+-|.
T Consensus 24 ~lHa~~v~~-~g~---~ilI~GpsGsGKStLA~~La~~g~--~iIsdDs 66 (205)
T 2qmh_A 24 SMHGVLVDI-YGL---GVLITGDSGVGKSETALELVQRGH--RLIADDR 66 (205)
T ss_dssp CEESEEEEE-TTE---EEEEECCCTTTTHHHHHHHHTTTC--EEEESSE
T ss_pred eeeEEEEEE-CCE---EEEEECCCCCCHHHHHHHHHHhCC--eEEecch
Confidence 345443333 344 799999999999999999998763 4455444
No 341
>1g16_A RAS-related protein SEC4; G protein RAB, signaling protein, endocytosis/exocytosis complex; HET: GDP; 1.80A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1g17_A* 2ocy_C 2eqb_A
Probab=93.38 E-value=0.047 Score=49.21 Aligned_cols=24 Identities=25% Similarity=0.418 Sum_probs=21.4
Q ss_pred ceEEEEECCCCCcHHHHHHHHHHh
Q 006117 66 IILVGVAGPSGAGKTVFTEKVLNF 89 (660)
Q Consensus 66 ~~IIGI~GpSGSGKSTLak~L~~l 89 (660)
.+-|+|+|++|+|||||++.+.+.
T Consensus 3 ~~~i~v~G~~~~GKssli~~l~~~ 26 (170)
T 1g16_A 3 IMKILLIGDSGVGKSCLLVRFVED 26 (170)
T ss_dssp EEEEEEEESTTSSHHHHHHHHHHC
T ss_pred ceEEEEECcCCCCHHHHHHHHHhC
Confidence 457999999999999999999875
No 342
>2hxs_A RAB-26, RAS-related protein RAB-28; GTPase, signaling protein; HET: G3D; 1.10A {Homo sapiens} PDB: 2hy4_A* 3e5h_A*
Probab=93.34 E-value=0.058 Score=49.23 Aligned_cols=25 Identities=24% Similarity=0.219 Sum_probs=22.0
Q ss_pred cceEEEEECCCCCcHHHHHHHHHHh
Q 006117 65 GIILVGVAGPSGAGKTVFTEKVLNF 89 (660)
Q Consensus 65 ~~~IIGI~GpSGSGKSTLak~L~~l 89 (660)
+.+-|+|+|++|+|||||++.+.+.
T Consensus 5 ~~~ki~v~G~~~~GKssl~~~l~~~ 29 (178)
T 2hxs_A 5 RQLKIVVLGDGASGKTSLTTCFAQE 29 (178)
T ss_dssp CEEEEEEECCTTSSHHHHHHHHHGG
T ss_pred ceEEEEEECcCCCCHHHHHHHHHhC
Confidence 4567999999999999999998864
No 343
>1z0f_A RAB14, member RAS oncogene family; RAB GTPase, vesicular trafficking, protein transport; HET: GDP; 2.15A {Homo sapiens} SCOP: c.37.1.8 PDB: 2aed_A* 4drz_A*
Probab=93.26 E-value=0.06 Score=48.91 Aligned_cols=26 Identities=19% Similarity=0.218 Sum_probs=22.8
Q ss_pred CcceEEEEECCCCCcHHHHHHHHHHh
Q 006117 64 HGIILVGVAGPSGAGKTVFTEKVLNF 89 (660)
Q Consensus 64 e~~~IIGI~GpSGSGKSTLak~L~~l 89 (660)
...+-|+|+|..|+|||||++.+.+.
T Consensus 13 ~~~~~i~v~G~~~~GKSsli~~l~~~ 38 (179)
T 1z0f_A 13 SYIFKYIIIGDMGVGKSCLLHQFTEK 38 (179)
T ss_dssp SEEEEEEEECSTTSSHHHHHHHHHHS
T ss_pred ccceEEEEECCCCCCHHHHHHHHHcC
Confidence 44578999999999999999999875
No 344
>1dek_A Deoxynucleoside monophosphate kinase; transferase, phosphotransferase; HET: DGP; 2.00A {Enterobacteria phage T4} SCOP: c.37.1.1 PDB: 1del_A*
Probab=93.16 E-value=0.055 Score=54.70 Aligned_cols=24 Identities=17% Similarity=0.263 Sum_probs=22.3
Q ss_pred eEEEEECCCCCcHHHHHHHHHHhC
Q 006117 67 ILVGVAGPSGAGKTVFTEKVLNFM 90 (660)
Q Consensus 67 ~IIGI~GpSGSGKSTLak~L~~lL 90 (660)
.+|||+|+.||||||+++.|...+
T Consensus 2 ~~i~ltG~~~sGK~tv~~~l~~~~ 25 (241)
T 1dek_A 2 KLIFLSGVKRSGKDTTADFIMSNY 25 (241)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHHS
T ss_pred eEEEEECCCCCCHHHHHHHHHHhc
Confidence 589999999999999999999865
No 345
>2g6b_A RAS-related protein RAB-26; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, unknown function; HET: GNP; 2.00A {Homo sapiens} SCOP: c.37.1.8
Probab=93.15 E-value=0.065 Score=48.99 Aligned_cols=26 Identities=27% Similarity=0.266 Sum_probs=22.7
Q ss_pred CcceEEEEECCCCCcHHHHHHHHHHh
Q 006117 64 HGIILVGVAGPSGAGKTVFTEKVLNF 89 (660)
Q Consensus 64 e~~~IIGI~GpSGSGKSTLak~L~~l 89 (660)
+..+-|+|+|.+|+|||||++.+.+.
T Consensus 8 ~~~~~i~v~G~~~~GKssli~~l~~~ 33 (180)
T 2g6b_A 8 DVAFKVMLVGDSGVGKTCLLVRFKDG 33 (180)
T ss_dssp SEEEEEEEECSTTSSHHHHHHHHHHS
T ss_pred CcceEEEEECcCCCCHHHHHHHHHhC
Confidence 44578999999999999999999875
No 346
>1svi_A GTP-binding protein YSXC; ENGB, GTPase, GDP, hydrolase; HET: GDP; 1.95A {Bacillus subtilis} SCOP: c.37.1.8 PDB: 1sul_A* 1svw_A*
Probab=93.13 E-value=0.046 Score=50.93 Aligned_cols=26 Identities=31% Similarity=0.535 Sum_probs=22.6
Q ss_pred CcceEEEEECCCCCcHHHHHHHHHHh
Q 006117 64 HGIILVGVAGPSGAGKTVFTEKVLNF 89 (660)
Q Consensus 64 e~~~IIGI~GpSGSGKSTLak~L~~l 89 (660)
.+.+.|+|+|++|+|||||++.|.+.
T Consensus 21 ~~~~~i~v~G~~~~GKSsli~~l~~~ 46 (195)
T 1svi_A 21 GGLPEIALAGRSNVGKSSFINSLINR 46 (195)
T ss_dssp SCCCEEEEEEBTTSSHHHHHHHHHTC
T ss_pred CCCCEEEEECCCCCCHHHHHHHHhCC
Confidence 34578999999999999999999865
No 347
>2z43_A DNA repair and recombination protein RADA; archaea, filament, DNA binding, molecular SWI RECA, DMC1; HET: DNA; 1.93A {Sulfolobus solfataricus} PDB: 2bke_A* 2dfl_A* 2zub_A* 2zuc_A* 2zud_A*
Probab=93.08 E-value=0.084 Score=54.90 Aligned_cols=28 Identities=18% Similarity=0.264 Sum_probs=24.8
Q ss_pred eccCCcceEEEEECCCCCcHHHHHHHHHHhC
Q 006117 60 AQKNHGIILVGVAGPSGAGKTVFTEKVLNFM 90 (660)
Q Consensus 60 i~~ge~~~IIGI~GpSGSGKSTLak~L~~lL 90 (660)
++.|. ++.|.|++|||||||+..++...
T Consensus 104 l~~G~---i~~i~G~~GsGKT~la~~la~~~ 131 (324)
T 2z43_A 104 IETRT---MTEFFGEFGSGKTQLCHQLSVNV 131 (324)
T ss_dssp EETTS---EEEEEESTTSSHHHHHHHHHHHT
T ss_pred CCCCc---EEEEECCCCCCHhHHHHHHHHHH
Confidence 56777 99999999999999999998764
No 348
>4fcw_A Chaperone protein CLPB; AAA domain; HET: ADP; 2.35A {Thermus thermophilus} PDB: 4fcv_A* 4fd2_A* 4fct_A*
Probab=93.07 E-value=0.066 Score=54.12 Aligned_cols=24 Identities=25% Similarity=0.357 Sum_probs=22.4
Q ss_pred eEEEEECCCCCcHHHHHHHHHHhC
Q 006117 67 ILVGVAGPSGAGKTVFTEKVLNFM 90 (660)
Q Consensus 67 ~IIGI~GpSGSGKSTLak~L~~lL 90 (660)
..+.|.||+|+||||+++.|++.+
T Consensus 48 ~~~ll~G~~GtGKt~la~~la~~~ 71 (311)
T 4fcw_A 48 GSFLFLGPTGVGKTELAKTLAATL 71 (311)
T ss_dssp EEEEEESCSSSSHHHHHHHHHHHH
T ss_pred eEEEEECCCCcCHHHHHHHHHHHH
Confidence 479999999999999999999987
No 349
>2a9k_A RAS-related protein RAL-A; bacterial ADP-ribosyltransferase, RAL, RHO, GD binding; HET: GDP NAD; 1.73A {Homo sapiens} SCOP: c.37.1.8 PDB: 2a78_A*
Probab=93.06 E-value=0.062 Score=49.18 Aligned_cols=24 Identities=25% Similarity=0.346 Sum_probs=21.6
Q ss_pred ceEEEEECCCCCcHHHHHHHHHHh
Q 006117 66 IILVGVAGPSGAGKTVFTEKVLNF 89 (660)
Q Consensus 66 ~~IIGI~GpSGSGKSTLak~L~~l 89 (660)
.+-|+|+|++|+|||||++.|.+.
T Consensus 18 ~~ki~v~G~~~~GKSsli~~l~~~ 41 (187)
T 2a9k_A 18 LHKVIMVGSGGVGKSALTLQFMYD 41 (187)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHHS
T ss_pred ceEEEEECCCCCCHHHHHHHHhhC
Confidence 467999999999999999999865
No 350
>3q85_A GTP-binding protein REM 2; G-domain, CAV2 beta, signaling protein; HET: GNP; 1.76A {Mus musculus} SCOP: c.37.1.8 PDB: 4aii_A*
Probab=93.01 E-value=0.055 Score=48.95 Aligned_cols=23 Identities=26% Similarity=0.392 Sum_probs=20.5
Q ss_pred eEEEEECCCCCcHHHHHHHHHHh
Q 006117 67 ILVGVAGPSGAGKTVFTEKVLNF 89 (660)
Q Consensus 67 ~IIGI~GpSGSGKSTLak~L~~l 89 (660)
+-|+|+|++|+|||||++.+.+.
T Consensus 3 ~ki~ivG~~~~GKSsli~~l~~~ 25 (169)
T 3q85_A 3 FKVMLVGESGVGKSTLAGTFGGL 25 (169)
T ss_dssp EEEEEECSTTSSHHHHHHHHHCC
T ss_pred EEEEEECCCCCCHHHHHHHHHhc
Confidence 56899999999999999999754
No 351
>3t15_A Ribulose bisphosphate carboxylase/oxygenase activ chloroplastic; photosynthesis, rubisco activase, AAA+ protein; 2.95A {Nicotiana tabacum} PDB: 3zw6_A
Probab=93.00 E-value=0.05 Score=55.81 Aligned_cols=27 Identities=30% Similarity=0.448 Sum_probs=24.0
Q ss_pred CcceEEEEECCCCCcHHHHHHHHHHhC
Q 006117 64 HGIILVGVAGPSGAGKTVFTEKVLNFM 90 (660)
Q Consensus 64 e~~~IIGI~GpSGSGKSTLak~L~~lL 90 (660)
..|..+.|.||+|+|||++++.|+..+
T Consensus 34 ~~p~~lLl~GppGtGKT~la~aiA~~l 60 (293)
T 3t15_A 34 KVPLILGIWGGKGQGKSFQCELVFRKM 60 (293)
T ss_dssp CCCSEEEEEECTTSCHHHHHHHHHHHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHh
Confidence 445688899999999999999999987
No 352
>2y8e_A RAB-protein 6, GH09086P, RAB6; hydrolase, nucleotide binding, GTP binding; HET: GNP; 1.39A {Drosophila melanogaster} PDB: 3cwz_A* 1yzq_A* 2gil_A* 2e9s_A* 2fe4_A* 2ffq_A* 1d5c_A*
Probab=92.93 E-value=0.057 Score=49.09 Aligned_cols=24 Identities=17% Similarity=0.187 Sum_probs=21.4
Q ss_pred ceEEEEECCCCCcHHHHHHHHHHh
Q 006117 66 IILVGVAGPSGAGKTVFTEKVLNF 89 (660)
Q Consensus 66 ~~IIGI~GpSGSGKSTLak~L~~l 89 (660)
.+-|+|+|+.|+|||||++.+.+.
T Consensus 14 ~~~i~v~G~~~~GKssli~~l~~~ 37 (179)
T 2y8e_A 14 KFKLVFLGEQSVGKTSLITRFMYD 37 (179)
T ss_dssp EEEEEEEESTTSSHHHHHHHHHHS
T ss_pred ceEEEEECCCCCCHHHHHHHHHcC
Confidence 467999999999999999999864
No 353
>2efe_B Small GTP-binding protein-like; GEF, GTPase, VPS9, nucleotide, transport protein; HET: GNH; 2.08A {Arabidopsis thaliana} PDB: 2efd_B 2efc_B* 2efh_B*
Probab=92.92 E-value=0.068 Score=48.88 Aligned_cols=26 Identities=19% Similarity=0.169 Sum_probs=22.3
Q ss_pred CcceEEEEECCCCCcHHHHHHHHHHh
Q 006117 64 HGIILVGVAGPSGAGKTVFTEKVLNF 89 (660)
Q Consensus 64 e~~~IIGI~GpSGSGKSTLak~L~~l 89 (660)
...+-|+|+|+.|+|||||++.+.+.
T Consensus 10 ~~~~ki~v~G~~~~GKSsli~~l~~~ 35 (181)
T 2efe_B 10 SINAKLVLLGDVGAGKSSLVLRFVKD 35 (181)
T ss_dssp CEEEEEEEECCTTSCHHHHHHHHHHC
T ss_pred ccceEEEEECcCCCCHHHHHHHHHcC
Confidence 33567999999999999999999865
No 354
>2gf0_A GTP-binding protein DI-RAS1; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC, transport protein; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8
Probab=92.90 E-value=0.067 Score=49.86 Aligned_cols=26 Identities=23% Similarity=0.238 Sum_probs=22.7
Q ss_pred CcceEEEEECCCCCcHHHHHHHHHHh
Q 006117 64 HGIILVGVAGPSGAGKTVFTEKVLNF 89 (660)
Q Consensus 64 e~~~IIGI~GpSGSGKSTLak~L~~l 89 (660)
...+-|+|+|.+|+|||||++.|.+.
T Consensus 6 ~~~~ki~vvG~~~~GKSsli~~l~~~ 31 (199)
T 2gf0_A 6 SNDYRVVVFGAGGVGKSSLVLRFVKG 31 (199)
T ss_dssp CCCEEEEEEECTTSSHHHHHHHHHHS
T ss_pred CCeeEEEEECCCCCcHHHHHHHHHcC
Confidence 34578999999999999999999874
No 355
>1nrj_B SR-beta, signal recognition particle receptor beta subunit; transmembrane, endoplasmic reticulum, GTP-binding; HET: GTP; 1.70A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=92.90 E-value=0.063 Score=51.20 Aligned_cols=27 Identities=22% Similarity=0.176 Sum_probs=23.4
Q ss_pred CcceEEEEECCCCCcHHHHHHHHHHhC
Q 006117 64 HGIILVGVAGPSGAGKTVFTEKVLNFM 90 (660)
Q Consensus 64 e~~~IIGI~GpSGSGKSTLak~L~~lL 90 (660)
.+.+.|.|+|++|+|||||++.|.+..
T Consensus 10 ~~~~~i~~~G~~g~GKTsl~~~l~~~~ 36 (218)
T 1nrj_B 10 SYQPSIIIAGPQNSGKTSLLTLLTTDS 36 (218)
T ss_dssp CCCCEEEEECSTTSSHHHHHHHHHHSS
T ss_pred CCCCEEEEECCCCCCHHHHHHHHhcCC
Confidence 345689999999999999999998864
No 356
>3tw8_B RAS-related protein RAB-35; longin domain, RAB GTPase, guanine exchange factor; 2.10A {Homo sapiens}
Probab=92.90 E-value=0.064 Score=48.81 Aligned_cols=26 Identities=19% Similarity=0.310 Sum_probs=22.0
Q ss_pred CcceEEEEECCCCCcHHHHHHHHHHh
Q 006117 64 HGIILVGVAGPSGAGKTVFTEKVLNF 89 (660)
Q Consensus 64 e~~~IIGI~GpSGSGKSTLak~L~~l 89 (660)
...+-|+|+|++|+|||||++.|.+.
T Consensus 7 ~~~~~i~v~G~~~~GKssl~~~l~~~ 32 (181)
T 3tw8_B 7 DHLFKLLIIGDSGVGKSSLLLRFADN 32 (181)
T ss_dssp CEEEEEEEECCTTSCHHHHHHHHCSC
T ss_pred CcceEEEEECCCCCCHHHHHHHHhcC
Confidence 34567999999999999999988754
No 357
>3pqc_A Probable GTP-binding protein ENGB; rossmann fold, GTPase, cell cycle, hydrolase; HET: GDP; 1.90A {Thermotoga maritima} PDB: 3pr1_A
Probab=92.88 E-value=0.052 Score=50.19 Aligned_cols=25 Identities=24% Similarity=0.197 Sum_probs=21.9
Q ss_pred cceEEEEECCCCCcHHHHHHHHHHh
Q 006117 65 GIILVGVAGPSGAGKTVFTEKVLNF 89 (660)
Q Consensus 65 ~~~IIGI~GpSGSGKSTLak~L~~l 89 (660)
..+.|+|+|++|+|||||++.|.+.
T Consensus 22 ~~~~i~v~G~~~~GKSsli~~l~~~ 46 (195)
T 3pqc_A 22 LKGEVAFVGRSNVGKSSLLNALFNR 46 (195)
T ss_dssp TTCEEEEEEBTTSSHHHHHHHHHTS
T ss_pred CCeEEEEECCCCCCHHHHHHHHHcC
Confidence 3467999999999999999999875
No 358
>4tmk_A Protein (thymidylate kinase); ATP:DTMP phosphotransferase, transferase; HET: T5A; 1.98A {Escherichia coli} SCOP: c.37.1.1 PDB: 5tmp_A*
Probab=92.86 E-value=0.046 Score=54.01 Aligned_cols=24 Identities=29% Similarity=0.418 Sum_probs=22.6
Q ss_pred eEEEEECCCCCcHHHHHHHHHHhC
Q 006117 67 ILVGVAGPSGAGKTVFTEKVLNFM 90 (660)
Q Consensus 67 ~IIGI~GpSGSGKSTLak~L~~lL 90 (660)
.+|.|.|++||||||+++.|...+
T Consensus 4 ~~i~~eG~~gsGKsT~~~~l~~~l 27 (213)
T 4tmk_A 4 KYIVIEGLEGAGKTTARNVVVETL 27 (213)
T ss_dssp CEEEEEECTTSCHHHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHHH
Confidence 489999999999999999999987
No 359
>3kkq_A RAS-related protein M-RAS; GTP-binding, GTPase, signaling protein; HET: GDP; 1.20A {Mus musculus} SCOP: c.37.1.8 PDB: 3kkp_A* 3kko_A* 3pit_A* 3pir_A* 1x1r_A* 1x1s_A*
Probab=92.86 E-value=0.077 Score=48.85 Aligned_cols=26 Identities=23% Similarity=0.287 Sum_probs=22.6
Q ss_pred CcceEEEEECCCCCcHHHHHHHHHHh
Q 006117 64 HGIILVGVAGPSGAGKTVFTEKVLNF 89 (660)
Q Consensus 64 e~~~IIGI~GpSGSGKSTLak~L~~l 89 (660)
.+.+-|+|+|.+|+|||||++.+.+.
T Consensus 16 ~~~~ki~v~G~~~~GKSsl~~~l~~~ 41 (183)
T 3kkq_A 16 LPTYKLVVVGDGGVGKSALTIQFFQK 41 (183)
T ss_dssp CCEEEEEEECSTTSSHHHHHHHHHHS
T ss_pred CCceEEEEECCCCCCHHHHHHHHHhC
Confidence 34578999999999999999999865
No 360
>3tkl_A RAS-related protein RAB-1A; vesicle trafficking, protein transport-protein binding compl; HET: GTP; 2.18A {Homo sapiens}
Probab=92.85 E-value=0.074 Score=49.40 Aligned_cols=26 Identities=19% Similarity=0.255 Sum_probs=22.8
Q ss_pred CcceEEEEECCCCCcHHHHHHHHHHh
Q 006117 64 HGIILVGVAGPSGAGKTVFTEKVLNF 89 (660)
Q Consensus 64 e~~~IIGI~GpSGSGKSTLak~L~~l 89 (660)
+..+-|+|+|++|+|||||++.|.+.
T Consensus 14 ~~~~ki~v~G~~~~GKSsli~~l~~~ 39 (196)
T 3tkl_A 14 DYLFKLLLIGDSGVGKSCLLLRFADD 39 (196)
T ss_dssp SEEEEEEEECSTTSSHHHHHHHHHHS
T ss_pred ccceEEEEECcCCCCHHHHHHHHHcC
Confidence 44578999999999999999999875
No 361
>2hf9_A Probable hydrogenase nickel incorporation protein HYPB; alpha and beta protein; HET: GSP; 1.90A {Methanocaldococcus jannaschii} PDB: 2hf8_A*
Probab=92.80 E-value=0.062 Score=51.69 Aligned_cols=26 Identities=31% Similarity=0.677 Sum_probs=22.7
Q ss_pred cceEEEEECCCCCcHHHHHHHHHHhC
Q 006117 65 GIILVGVAGPSGAGKTVFTEKVLNFM 90 (660)
Q Consensus 65 ~~~IIGI~GpSGSGKSTLak~L~~lL 90 (660)
+.+.|+|+|.+|+|||||++.+....
T Consensus 37 ~~~~i~ivG~~gvGKTtl~~~l~~~~ 62 (226)
T 2hf9_A 37 GVVAFDFMGAIGSGKTLLIEKLIDNL 62 (226)
T ss_dssp TCEEEEEEESTTSSHHHHHHHHHHHH
T ss_pred CCeEEEEEcCCCCCHHHHHHHHHHHh
Confidence 35689999999999999999998764
No 362
>1vg8_A RAS-related protein RAB-7; GTP-binding protein, protein transport; HET: GNP; 1.70A {Rattus norvegicus} SCOP: c.37.1.8 PDB: 1vg0_B* 3law_A* 1t91_A* 1yhn_A* 1vg1_A* 1vg9_B*
Probab=92.80 E-value=0.071 Score=50.11 Aligned_cols=27 Identities=30% Similarity=0.388 Sum_probs=22.7
Q ss_pred CcceEEEEECCCCCcHHHHHHHHHHhC
Q 006117 64 HGIILVGVAGPSGAGKTVFTEKVLNFM 90 (660)
Q Consensus 64 e~~~IIGI~GpSGSGKSTLak~L~~lL 90 (660)
...+-|+|+|+.|+|||||++.|.+.-
T Consensus 6 ~~~~ki~v~G~~~~GKSsli~~l~~~~ 32 (207)
T 1vg8_A 6 KVLLKVIILGDSGVGKTSLMNQYVNKK 32 (207)
T ss_dssp -CEEEEEEECCTTSSHHHHHHHHHHSC
T ss_pred CcceEEEEECcCCCCHHHHHHHHHcCC
Confidence 345689999999999999999998753
No 363
>2gf9_A RAS-related protein RAB-3D; G-protein, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 1.53A {Homo sapiens} PDB: 3rab_A*
Probab=92.80 E-value=0.076 Score=49.48 Aligned_cols=26 Identities=23% Similarity=0.204 Sum_probs=22.8
Q ss_pred CcceEEEEECCCCCcHHHHHHHHHHh
Q 006117 64 HGIILVGVAGPSGAGKTVFTEKVLNF 89 (660)
Q Consensus 64 e~~~IIGI~GpSGSGKSTLak~L~~l 89 (660)
+..+-|+|+|++|+|||||++.|.+.
T Consensus 20 ~~~~ki~vvG~~~~GKSsli~~l~~~ 45 (189)
T 2gf9_A 20 DYMFKLLLIGNSSVGKTSFLFRYADD 45 (189)
T ss_dssp SEEEEEEEECSTTSSHHHHHHHHHHS
T ss_pred CceeEEEEECCCCCCHHHHHHHHHcC
Confidence 44578999999999999999999875
No 364
>3t1o_A Gliding protein MGLA; G domain containing protein, bacterial GTPase, bacterial POL motility, POLE localisation, alpha/beta protein; HET: GDP; 1.90A {Thermus thermophilus} PDB: 3t12_A* 3t1q_A* 3t1t_A* 3t1v_A*
Probab=92.73 E-value=0.078 Score=48.98 Aligned_cols=27 Identities=19% Similarity=0.097 Sum_probs=23.6
Q ss_pred CcceEEEEECCCCCcHHHHHHHHHHhC
Q 006117 64 HGIILVGVAGPSGAGKTVFTEKVLNFM 90 (660)
Q Consensus 64 e~~~IIGI~GpSGSGKSTLak~L~~lL 90 (660)
+..+-|+|+|.+|+|||||++.+.+..
T Consensus 12 ~~~~ki~vvG~~~~GKssL~~~l~~~~ 38 (198)
T 3t1o_A 12 EINFKIVYYGPGLSGKTTNLKWIYSKV 38 (198)
T ss_dssp EEEEEEEEECSTTSSHHHHHHHHHHTS
T ss_pred ccccEEEEECCCCCCHHHHHHHHHhhc
Confidence 445679999999999999999998876
No 365
>2bov_A RAla, RAS-related protein RAL-A; C3BOT, exoenzyme, RAla, GTPase, ribosylating toxin, GTP-binding, lipoprotein, prenylation; HET: GDP; 2.66A {Homo sapiens}
Probab=92.72 E-value=0.073 Score=49.87 Aligned_cols=25 Identities=24% Similarity=0.339 Sum_probs=21.9
Q ss_pred cceEEEEECCCCCcHHHHHHHHHHh
Q 006117 65 GIILVGVAGPSGAGKTVFTEKVLNF 89 (660)
Q Consensus 65 ~~~IIGI~GpSGSGKSTLak~L~~l 89 (660)
+.+-|+|+|++|+|||||++.+.+.
T Consensus 13 ~~~ki~v~G~~~~GKSsli~~l~~~ 37 (206)
T 2bov_A 13 ALHKVIMVGSGGVGKSALTLQFMYD 37 (206)
T ss_dssp CEEEEEEECSTTSSHHHHHHHHHHS
T ss_pred ceEEEEEECCCCCCHHHHHHHHHhC
Confidence 3467999999999999999999865
No 366
>2p65_A Hypothetical protein PF08_0063; CLPB, malaria, structural genomics, structural genomics consortium, SGC, unknown function; 1.70A {Plasmodium falciparum}
Probab=92.70 E-value=0.056 Score=49.52 Aligned_cols=23 Identities=26% Similarity=0.251 Sum_probs=21.1
Q ss_pred EEEEECCCCCcHHHHHHHHHHhC
Q 006117 68 LVGVAGPSGAGKTVFTEKVLNFM 90 (660)
Q Consensus 68 IIGI~GpSGSGKSTLak~L~~lL 90 (660)
.+.|.|++|+||||+++.++..+
T Consensus 45 ~vll~G~~G~GKT~la~~~~~~~ 67 (187)
T 2p65_A 45 NPILLGDPGVGKTAIVEGLAIKI 67 (187)
T ss_dssp EEEEESCGGGCHHHHHHHHHHHH
T ss_pred ceEEECCCCCCHHHHHHHHHHHH
Confidence 66899999999999999999876
No 367
>2bme_A RAB4A, RAS-related protein RAB4A; GTP-binding protein, vesicular transport, endocytosis, prenylation, protein transport, transport; HET: GNP; 1.57A {Homo sapiens} SCOP: c.37.1.8 PDB: 2bmd_A* 1yu9_A* 1z0k_A*
Probab=92.70 E-value=0.071 Score=49.08 Aligned_cols=26 Identities=19% Similarity=0.304 Sum_probs=22.5
Q ss_pred CcceEEEEECCCCCcHHHHHHHHHHh
Q 006117 64 HGIILVGVAGPSGAGKTVFTEKVLNF 89 (660)
Q Consensus 64 e~~~IIGI~GpSGSGKSTLak~L~~l 89 (660)
++.+-|+|+|++|+|||||++.+.+.
T Consensus 8 ~~~~ki~v~G~~~~GKSsli~~l~~~ 33 (186)
T 2bme_A 8 DFLFKFLVIGNAGTGKSCLLHQFIEK 33 (186)
T ss_dssp SEEEEEEEEESTTSSHHHHHHHHHHS
T ss_pred ccceEEEEECCCCCCHHHHHHHHHcC
Confidence 34568999999999999999999865
No 368
>3auy_A DNA double-strand break repair RAD50 ATPase; DNA repair, ABC transporter ATPase domain-like; HET: DNA ADP; 2.70A {Methanocaldococcus jannaschii} PDB: 3aux_A* 3av0_B*
Probab=92.69 E-value=0.067 Score=56.69 Aligned_cols=33 Identities=24% Similarity=0.405 Sum_probs=25.5
Q ss_pred EecceeeccCCcceEEEEECCCCCcHHHHHHHHHHhC
Q 006117 54 RACQLLAQKNHGIILVGVAGPSGAGKTVFTEKVLNFM 90 (660)
Q Consensus 54 ~~Isl~i~~ge~~~IIGI~GpSGSGKSTLak~L~~lL 90 (660)
++..+...+ + +..|+|+|||||||++.+|.-.+
T Consensus 17 ~~~~i~f~~-g---l~vi~G~NGaGKT~ileAI~~~l 49 (371)
T 3auy_A 17 VNSRIKFEK-G---IVAIIGENGSGKSSIFEAVFFAL 49 (371)
T ss_dssp EEEEEECCS-E---EEEEEECTTSSHHHHHHHHHHHH
T ss_pred cceEEecCC-C---eEEEECCCCCCHHHHHHHHHHHH
Confidence 444555433 4 89999999999999999998643
No 369
>2xtp_A GTPase IMAP family member 2; immune system, G protein; HET: MSE; 1.50A {Homo sapiens} PDB: 2xto_A* 2xtm_A* 2xtn_A* 3p1j_A
Probab=92.60 E-value=0.061 Score=53.37 Aligned_cols=27 Identities=19% Similarity=0.348 Sum_probs=22.4
Q ss_pred CCcceEEEEECCCCCcHHHHHHHHHHh
Q 006117 63 NHGIILVGVAGPSGAGKTVFTEKVLNF 89 (660)
Q Consensus 63 ge~~~IIGI~GpSGSGKSTLak~L~~l 89 (660)
..+.+.|+|+|.+|+|||||++.|.+.
T Consensus 19 ~~~~~~I~lvG~~g~GKStl~n~l~~~ 45 (260)
T 2xtp_A 19 SRSELRIILVGKTGTGKSAAGNSILRK 45 (260)
T ss_dssp --CCEEEEEEECTTSCHHHHHHHHHTS
T ss_pred CCCceEEEEECCCCCCHHHHHHHHhCC
Confidence 344578999999999999999999864
No 370
>1z06_A RAS-related protein RAB-33B; RAB GTPase, RAB33B GTPase, vesicular trafficking, protein transport; HET: GNP; 1.81A {Mus musculus} SCOP: c.37.1.8 PDB: 2g77_B*
Probab=92.57 E-value=0.08 Score=49.31 Aligned_cols=25 Identities=32% Similarity=0.290 Sum_probs=22.0
Q ss_pred cceEEEEECCCCCcHHHHHHHHHHh
Q 006117 65 GIILVGVAGPSGAGKTVFTEKVLNF 89 (660)
Q Consensus 65 ~~~IIGI~GpSGSGKSTLak~L~~l 89 (660)
+.+-|+|+|.+|+|||||++.+.+.
T Consensus 19 ~~~ki~v~G~~~~GKSsli~~l~~~ 43 (189)
T 1z06_A 19 RIFKIIVIGDSNVGKTCLTYRFCAG 43 (189)
T ss_dssp CEEEEEEECCTTSSHHHHHHHHHHS
T ss_pred ceEEEEEECCCCCCHHHHHHHHHcC
Confidence 3568999999999999999998864
No 371
>3h4m_A Proteasome-activating nucleotidase; ATPase, PAN, ATP-binding, nucleotide-binding, HY; HET: ADP; 3.11A {Methanocaldococcus jannaschii}
Probab=92.57 E-value=0.099 Score=52.29 Aligned_cols=23 Identities=30% Similarity=0.456 Sum_probs=21.9
Q ss_pred EEEEECCCCCcHHHHHHHHHHhC
Q 006117 68 LVGVAGPSGAGKTVFTEKVLNFM 90 (660)
Q Consensus 68 IIGI~GpSGSGKSTLak~L~~lL 90 (660)
-+.|.||+|+||||+++.++..+
T Consensus 53 ~~ll~G~~GtGKT~la~~la~~~ 75 (285)
T 3h4m_A 53 GILLYGPPGTGKTLLAKAVATET 75 (285)
T ss_dssp EEEEESSSSSSHHHHHHHHHHHT
T ss_pred eEEEECCCCCcHHHHHHHHHHHh
Confidence 68899999999999999999987
No 372
>2a5j_A RAS-related protein RAB-2B; GTPase, signal transduction, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 1.50A {Homo sapiens} SCOP: c.37.1.8 PDB: 1z0a_A*
Probab=92.56 E-value=0.085 Score=49.33 Aligned_cols=26 Identities=15% Similarity=0.216 Sum_probs=22.6
Q ss_pred CcceEEEEECCCCCcHHHHHHHHHHh
Q 006117 64 HGIILVGVAGPSGAGKTVFTEKVLNF 89 (660)
Q Consensus 64 e~~~IIGI~GpSGSGKSTLak~L~~l 89 (660)
...+-|+|+|..|+|||||++.+.+.
T Consensus 19 ~~~~ki~v~G~~~~GKSsli~~l~~~ 44 (191)
T 2a5j_A 19 SYLFKYIIIGDTGVGKSCLLLQFTDK 44 (191)
T ss_dssp CEEEEEEEESSTTSSHHHHHHHHHHS
T ss_pred CcceEEEEECcCCCCHHHHHHHHhcC
Confidence 34567999999999999999999875
No 373
>2qz4_A Paraplegin; AAA+, SPG7, protease, ADP, structural genomics, structural G consortium, SGC, ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.22A {Homo sapiens}
Probab=92.55 E-value=0.086 Score=51.77 Aligned_cols=23 Identities=30% Similarity=0.424 Sum_probs=21.4
Q ss_pred EEEEECCCCCcHHHHHHHHHHhC
Q 006117 68 LVGVAGPSGAGKTVFTEKVLNFM 90 (660)
Q Consensus 68 IIGI~GpSGSGKSTLak~L~~lL 90 (660)
-+.|.||+|+||||+++.++..+
T Consensus 41 ~vll~G~~GtGKT~la~~la~~~ 63 (262)
T 2qz4_A 41 GALLLGPPGCGKTLLAKAVATEA 63 (262)
T ss_dssp EEEEESCTTSSHHHHHHHHHHHH
T ss_pred eEEEECCCCCCHHHHHHHHHHHh
Confidence 67899999999999999999986
No 374
>2ohf_A Protein OLA1, GTP-binding protein 9; ATPase, GTPase, P-loop, OBG-like, hydrolase; HET: ACP; 2.70A {Homo sapiens}
Probab=92.54 E-value=0.069 Score=57.88 Aligned_cols=23 Identities=26% Similarity=0.517 Sum_probs=20.6
Q ss_pred eEEEEECCCCCcHHHHHHHHHHh
Q 006117 67 ILVGVAGPSGAGKTVFTEKVLNF 89 (660)
Q Consensus 67 ~IIGI~GpSGSGKSTLak~L~~l 89 (660)
..|||+|.+|+|||||++.|.+.
T Consensus 23 ~kvgIVG~pnvGKSTL~n~Ltg~ 45 (396)
T 2ohf_A 23 LKIGIVGLPNVGKSTFFNVLTNS 45 (396)
T ss_dssp CCEEEECCSSSSHHHHHHHHHC-
T ss_pred CEEEEECCCCCCHHHHHHHHHCC
Confidence 37999999999999999999876
No 375
>4ad8_A DNA repair protein RECN; DNA binding protein, ATPase domain; HET: DNA; 4.00A {Deinococcus radiodurans}
Probab=92.47 E-value=0.021 Score=63.40 Aligned_cols=36 Identities=19% Similarity=0.346 Sum_probs=29.7
Q ss_pred EEEecceeeccCCcceEEEEECCCCCcHHHHHHHHHHhCC
Q 006117 52 VIRACQLLAQKNHGIILVGVAGPSGAGKTVFTEKVLNFMP 91 (660)
Q Consensus 52 vL~~Isl~i~~ge~~~IIGI~GpSGSGKSTLak~L~~lLp 91 (660)
.++++++.+.+| +.+|+|+||||||||+.+|...++
T Consensus 50 ~~~~~~l~f~~g----~n~i~G~NGaGKS~lleAl~~llg 85 (517)
T 4ad8_A 50 TITQLELELGGG----FCAFTGETGAGKSIIVDALGLLLG 85 (517)
T ss_dssp TBSCEEEECCCS----EEEEEESHHHHHHHHTHHHHHHTC
T ss_pred ceeeEEEecCCC----eEEEEcCCCCCHHHHHHHHHHHhc
Confidence 456777776543 899999999999999999998873
No 376
>1v5w_A DMC1, meiotic recombination protein DMC1/LIM15 homolog; DNA-binding protein, ring protein, octamer, AAA ATPase; 3.20A {Homo sapiens} SCOP: c.37.1.11 PDB: 2zjb_A
Probab=92.46 E-value=0.12 Score=54.40 Aligned_cols=27 Identities=15% Similarity=0.143 Sum_probs=24.0
Q ss_pred eccCCcceEEEEECCCCCcHHHHHHHHHHh
Q 006117 60 AQKNHGIILVGVAGPSGAGKTVFTEKVLNF 89 (660)
Q Consensus 60 i~~ge~~~IIGI~GpSGSGKSTLak~L~~l 89 (660)
++.|. ++.|.|++|||||||+..++..
T Consensus 119 l~~G~---i~~I~G~~GsGKTtla~~la~~ 145 (343)
T 1v5w_A 119 IESMA---ITEAFGEFRTGKTQLSHTLCVT 145 (343)
T ss_dssp BCSSE---EEEEECCTTCTHHHHHHHHHHH
T ss_pred CCCCe---EEEEECCCCCCHHHHHHHHHHH
Confidence 45666 9999999999999999999886
No 377
>3ice_A Transcription termination factor RHO; transcription, ATPase, hexamer, helicase, RNA, RECA, OB fold ATP-binding, hydrolase; HET: MSE ADP SPD; 2.80A {Escherichia coli k-12} PDB: 1pv4_A 1pvo_A* 1xpo_A* 1xpr_A* 1xpu_A* 2ht1_A
Probab=92.45 E-value=0.065 Score=58.30 Aligned_cols=33 Identities=15% Similarity=0.190 Sum_probs=30.2
Q ss_pred ecceeeccCCcceEEEEECCCCCcHHHHHHHHHHhC
Q 006117 55 ACQLLAQKNHGIILVGVAGPSGAGKTVFTEKVLNFM 90 (660)
Q Consensus 55 ~Isl~i~~ge~~~IIGI~GpSGSGKSTLak~L~~lL 90 (660)
++.+.+.+|+ .++|.||+|+|||||++.|+..+
T Consensus 166 D~~~pi~rGQ---r~~IvG~sG~GKTtLl~~Iar~i 198 (422)
T 3ice_A 166 DLASPIGRGQ---RGLIVAPPKAGKTMLLQNIAQSI 198 (422)
T ss_dssp HHHSCCBTTC---EEEEECCSSSSHHHHHHHHHHHH
T ss_pred eeeeeecCCc---EEEEecCCCCChhHHHHHHHHHH
Confidence 7888889999 99999999999999999998875
No 378
>1mh1_A RAC1; GTP-binding, GTPase, small G-protein, RHO family, RAS super family; HET: GNP; 1.38A {Homo sapiens} SCOP: c.37.1.8 PDB: 1hh4_A* 2p2l_A* 2h7v_A* 1g4u_R* 1i4d_D* 1i4l_D* 2vrw_A 1e96_A* 1i4t_D* 2rmk_A* 2yin_C 1ryf_A* 1ryh_A* 3su8_A* 3sua_A* 2fju_A* 1he1_C* 2nz8_A 1foe_B 3bji_C ...
Probab=92.45 E-value=0.081 Score=48.47 Aligned_cols=24 Identities=25% Similarity=0.191 Sum_probs=21.3
Q ss_pred ceEEEEECCCCCcHHHHHHHHHHh
Q 006117 66 IILVGVAGPSGAGKTVFTEKVLNF 89 (660)
Q Consensus 66 ~~IIGI~GpSGSGKSTLak~L~~l 89 (660)
.+-|+|+|.+|+|||||++.+.+.
T Consensus 5 ~~~i~~~G~~~~GKssl~~~l~~~ 28 (186)
T 1mh1_A 5 AIKCVVVGDGAVGKTCLLISYTTN 28 (186)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHHS
T ss_pred EEEEEEECCCCCCHHHHHHHHHcC
Confidence 467999999999999999999864
No 379
>1moz_A ARL1, ADP-ribosylation factor-like protein 1; GTP-binding, protein binding; HET: GDP; 3.17A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=92.43 E-value=0.054 Score=49.75 Aligned_cols=24 Identities=25% Similarity=0.343 Sum_probs=20.9
Q ss_pred CcceEEEEECCCCCcHHHHHHHHH
Q 006117 64 HGIILVGVAGPSGAGKTVFTEKVL 87 (660)
Q Consensus 64 e~~~IIGI~GpSGSGKSTLak~L~ 87 (660)
.+.+-|+|+|++|+|||||++.+.
T Consensus 16 ~~~~~i~v~G~~~~GKssli~~l~ 39 (183)
T 1moz_A 16 NKELRILILGLDGAGKTTILYRLQ 39 (183)
T ss_dssp SSCEEEEEEEETTSSHHHHHHHTC
T ss_pred CCccEEEEECCCCCCHHHHHHHHh
Confidence 456789999999999999998765
No 380
>1r8s_A ADP-ribosylation factor 1; protein transport/exchange factor, protein transport-exchang complex; HET: GDP; 1.46A {Bos taurus} SCOP: c.37.1.8 PDB: 1re0_A* 1s9d_A* 1u81_A* 1r8q_A* 1rrf_A* 1rrg_A* 1hur_A* 1o3y_A* 1j2j_A* 2j59_A* 1mr3_F* 2k5u_A* 3lrp_A* 3tjz_A* 3rd1_A* 2ksq_A* 2a5d_A* 2a5f_A* 2j5x_A* 1e0s_A* ...
Probab=92.41 E-value=0.074 Score=47.80 Aligned_cols=22 Identities=27% Similarity=0.152 Sum_probs=19.8
Q ss_pred EEEEECCCCCcHHHHHHHHHHh
Q 006117 68 LVGVAGPSGAGKTVFTEKVLNF 89 (660)
Q Consensus 68 IIGI~GpSGSGKSTLak~L~~l 89 (660)
-|+|+|++|+|||||++.+.+.
T Consensus 2 ki~~~G~~~~GKssl~~~l~~~ 23 (164)
T 1r8s_A 2 RILMVGLDAAGKTTILYKLKLG 23 (164)
T ss_dssp EEEEECSTTSSHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHcC
Confidence 4899999999999999999764
No 381
>4ag6_A VIRB4 ATPase, type IV secretory pathway VIRB4 components-like P; hydrolase, type IV secretion, conjugation; 2.35A {Thermoanaerobacter pseudethanolicus} PDB: 4ag5_A
Probab=92.41 E-value=0.076 Score=56.34 Aligned_cols=23 Identities=22% Similarity=0.172 Sum_probs=21.0
Q ss_pred EEEEECCCCCcHHHHHHHHHHhC
Q 006117 68 LVGVAGPSGAGKTVFTEKVLNFM 90 (660)
Q Consensus 68 IIGI~GpSGSGKSTLak~L~~lL 90 (660)
.+.|+|++||||||+++.|...+
T Consensus 37 ~~~i~G~~G~GKs~~~~~~~~~~ 59 (392)
T 4ag6_A 37 NWTILAKPGAGKSFTAKMLLLRE 59 (392)
T ss_dssp CEEEECCTTSSHHHHHHHHHHHH
T ss_pred ceEEEcCCCCCHHHHHHHHHHHH
Confidence 68899999999999999998775
No 382
>3ihw_A Centg3; RAS, centaurin, GTPase, structural genomics, structural genomics consortium, SGC, alternative splicing, ANK repeat, cytoplasm, GTP-binding; 1.92A {Homo sapiens} SCOP: c.37.1.0
Probab=92.41 E-value=0.095 Score=49.16 Aligned_cols=25 Identities=24% Similarity=0.393 Sum_probs=21.5
Q ss_pred cceEEEEECCCCCcHHHHHHHHHHh
Q 006117 65 GIILVGVAGPSGAGKTVFTEKVLNF 89 (660)
Q Consensus 65 ~~~IIGI~GpSGSGKSTLak~L~~l 89 (660)
+.+-|+|+|.+|+|||||++.+.+.
T Consensus 19 ~~~ki~ivG~~~vGKSsL~~~~~~~ 43 (184)
T 3ihw_A 19 PELKVGIVGNLSSGKSALVHRYLTG 43 (184)
T ss_dssp CEEEEEEECCTTSCHHHHHHHHHHS
T ss_pred CeeEEEEECCCCCCHHHHHHHHhcC
Confidence 3578999999999999999877764
No 383
>3t5g_A GTP-binding protein RHEB; immunoglobulin-like beta sandwitch, PDE delta, RHEB; HET: GDP FAR; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 1xtq_A* 1xtr_A* 1xts_A* 2l0x_A* 3sea_A*
Probab=92.41 E-value=0.073 Score=48.89 Aligned_cols=25 Identities=16% Similarity=0.177 Sum_probs=21.7
Q ss_pred cceEEEEECCCCCcHHHHHHHHHHh
Q 006117 65 GIILVGVAGPSGAGKTVFTEKVLNF 89 (660)
Q Consensus 65 ~~~IIGI~GpSGSGKSTLak~L~~l 89 (660)
+.+-|+|+|.+|+|||||++.+.+.
T Consensus 5 ~~~ki~~~G~~~~GKSsli~~l~~~ 29 (181)
T 3t5g_A 5 KSRKIAILGYRSVGKSSLTIQFVEG 29 (181)
T ss_dssp EEEEEEEEESTTSSHHHHHHHHHHS
T ss_pred ceEEEEEECcCCCCHHHHHHHHHcC
Confidence 3568999999999999999999853
No 384
>3q72_A GTP-binding protein RAD; G-domain, CAV2 beta, signaling protein; HET: GNP; 1.66A {Homo sapiens} SCOP: c.37.1.8 PDB: 3q7p_A* 3q7q_A* 2gjs_A* 2dpx_A*
Probab=92.37 E-value=0.066 Score=48.24 Aligned_cols=23 Identities=22% Similarity=0.281 Sum_probs=20.2
Q ss_pred eEEEEECCCCCcHHHHHHHHHHh
Q 006117 67 ILVGVAGPSGAGKTVFTEKVLNF 89 (660)
Q Consensus 67 ~IIGI~GpSGSGKSTLak~L~~l 89 (660)
+-|+|+|++|+|||||++.+.+.
T Consensus 3 ~ki~~vG~~~~GKSsli~~l~~~ 25 (166)
T 3q72_A 3 YKVLLLGAPGVGKSALARIFGGV 25 (166)
T ss_dssp CEEEEEESTTSSHHHHHHHHCCC
T ss_pred EEEEEECCCCCCHHHHHHHHcCc
Confidence 46899999999999999988654
No 385
>2fg5_A RAB-22B, RAS-related protein RAB-31; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GNP; 2.80A {Homo sapiens} SCOP: c.37.1.8
Probab=92.36 E-value=0.077 Score=49.76 Aligned_cols=26 Identities=19% Similarity=0.258 Sum_probs=22.6
Q ss_pred CcceEEEEECCCCCcHHHHHHHHHHh
Q 006117 64 HGIILVGVAGPSGAGKTVFTEKVLNF 89 (660)
Q Consensus 64 e~~~IIGI~GpSGSGKSTLak~L~~l 89 (660)
.+.+-|+|+|+.|+|||||++.+.+.
T Consensus 21 ~~~~ki~vvG~~~~GKSsli~~l~~~ 46 (192)
T 2fg5_A 21 IRELKVCLLGDTGVGKSSIVCRFVQD 46 (192)
T ss_dssp CEEEEEEEEECTTSSHHHHHHHHHHC
T ss_pred CCceEEEEECcCCCCHHHHHHHHhcC
Confidence 34578999999999999999999875
No 386
>3reg_A RHO-like small GTPase; cytoskeleton, nucleotide-binding, GTP-binding, signaling Pro lipoprotein, prenylation; HET: GSP; 1.80A {Entamoeba histolytica} PDB: 3ref_B* 4dvg_A*
Probab=92.28 E-value=0.089 Score=49.20 Aligned_cols=27 Identities=19% Similarity=0.167 Sum_probs=23.0
Q ss_pred CCcceEEEEECCCCCcHHHHHHHHHHh
Q 006117 63 NHGIILVGVAGPSGAGKTVFTEKVLNF 89 (660)
Q Consensus 63 ge~~~IIGI~GpSGSGKSTLak~L~~l 89 (660)
..+.+-|+|+|.+|+|||||++.+.+.
T Consensus 20 ~~~~~ki~~vG~~~~GKSsl~~~l~~~ 46 (194)
T 3reg_A 20 GKKALKIVVVGDGAVGKTCLLLAFSKG 46 (194)
T ss_dssp -CEEEEEEEECSTTSSHHHHHHHHHHS
T ss_pred cceeeEEEEECcCCCCHHHHHHHHhcC
Confidence 445678999999999999999999875
No 387
>3tmk_A Thymidylate kinase; phosphotransferase; HET: T5A; 2.00A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 2tmk_A* 1tmk_A*
Probab=92.24 E-value=0.067 Score=53.10 Aligned_cols=26 Identities=19% Similarity=0.238 Sum_probs=23.7
Q ss_pred eEEEEECCCCCcHHHHHHHHHHhCCC
Q 006117 67 ILVGVAGPSGAGKTVFTEKVLNFMPS 92 (660)
Q Consensus 67 ~IIGI~GpSGSGKSTLak~L~~lLp~ 92 (660)
.+|.|.|++||||||+++.|+..+..
T Consensus 6 ~~i~~eG~~g~GKst~~~~l~~~l~~ 31 (216)
T 3tmk_A 6 KLILIEGLDRTGKTTQCNILYKKLQP 31 (216)
T ss_dssp CEEEEEECSSSSHHHHHHHHHHHHCS
T ss_pred eEEEEECCCCCCHHHHHHHHHHHhcc
Confidence 49999999999999999999999843
No 388
>2qby_A CDC6 homolog 1, cell division control protein 6 homolog 1; winged-helix domain, helix-turn-helix, AAA+ ATPase domain, protein-DNA complex; HET: DNA SPD ADP; 3.35A {Sulfolobus solfataricus}
Probab=92.22 E-value=0.066 Score=55.10 Aligned_cols=26 Identities=27% Similarity=0.264 Sum_probs=23.0
Q ss_pred cceEEEEECCCCCcHHHHHHHHHHhC
Q 006117 65 GIILVGVAGPSGAGKTVFTEKVLNFM 90 (660)
Q Consensus 65 ~~~IIGI~GpSGSGKSTLak~L~~lL 90 (660)
.+..+.|.|++|+||||+++.+++.+
T Consensus 44 ~~~~vli~G~~G~GKTtl~~~l~~~~ 69 (386)
T 2qby_A 44 KPNNIFIYGLTGTGKTAVVKFVLSKL 69 (386)
T ss_dssp CCCCEEEEECTTSSHHHHHHHHHHHH
T ss_pred CCCeEEEECCCCCCHHHHHHHHHHHH
Confidence 34489999999999999999999876
No 389
>1fnn_A CDC6P, cell division control protein 6; ORC1, AAA protein, DNA replication initation factor, cell cycle control factor; HET: ADP; 2.00A {Pyrobaculum aerophilum} SCOP: a.4.5.11 c.37.1.20
Probab=92.21 E-value=0.083 Score=54.74 Aligned_cols=23 Identities=30% Similarity=0.440 Sum_probs=21.9
Q ss_pred EEEEECCCCCcHHHHHHHHHHhC
Q 006117 68 LVGVAGPSGAGKTVFTEKVLNFM 90 (660)
Q Consensus 68 IIGI~GpSGSGKSTLak~L~~lL 90 (660)
.+.|.||+|+||||+++.+++.+
T Consensus 46 ~~li~G~~G~GKTtl~~~l~~~~ 68 (389)
T 1fnn_A 46 RATLLGRPGTGKTVTLRKLWELY 68 (389)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHH
T ss_pred eEEEECCCCCCHHHHHHHHHHHH
Confidence 89999999999999999999887
No 390
>1fzq_A ADP-ribosylation factor-like protein 3; protein-GDP complex without magnesium, ARF family, RAS superfamily, G-domain, signaling protein; HET: MES GDP; 1.70A {Mus musculus} SCOP: c.37.1.8 PDB: 3bh7_A* 3bh6_A*
Probab=92.15 E-value=0.084 Score=49.19 Aligned_cols=26 Identities=19% Similarity=0.230 Sum_probs=22.4
Q ss_pred CcceEEEEECCCCCcHHHHHHHHHHh
Q 006117 64 HGIILVGVAGPSGAGKTVFTEKVLNF 89 (660)
Q Consensus 64 e~~~IIGI~GpSGSGKSTLak~L~~l 89 (660)
...+.|+|+|++|+|||||++.+.+.
T Consensus 14 ~~~~ki~ivG~~~vGKSsL~~~l~~~ 39 (181)
T 1fzq_A 14 DQEVRILLLGLDNAGKTTLLKQLASE 39 (181)
T ss_dssp SSCEEEEEEESTTSSHHHHHHHHCCS
T ss_pred CCceEEEEECCCCCCHHHHHHHHhcC
Confidence 34578999999999999999988764
No 391
>2p5s_A RAS and EF-hand domain containing; G-protein, RAB, GDP, structural genomics, SGC, structural genomics consortium, signaling protein; HET: GDP; 2.15A {Homo sapiens}
Probab=92.15 E-value=0.095 Score=49.40 Aligned_cols=27 Identities=19% Similarity=0.294 Sum_probs=22.0
Q ss_pred CCcceEEEEECCCCCcHHHHHHHHHHh
Q 006117 63 NHGIILVGVAGPSGAGKTVFTEKVLNF 89 (660)
Q Consensus 63 ge~~~IIGI~GpSGSGKSTLak~L~~l 89 (660)
.++.+-|+|+|+.|+|||||++.+.+.
T Consensus 25 ~~~~~ki~v~G~~~~GKSsli~~l~~~ 51 (199)
T 2p5s_A 25 SQKAYKIVLAGDAAVGKSSFLMRLCKN 51 (199)
T ss_dssp ---CEEEEEESSTTSSHHHHHHHHHHC
T ss_pred cCCCeEEEEECcCCCCHHHHHHHHHhC
Confidence 344678999999999999999999875
No 392
>3lxw_A GTPase IMAP family member 1; immunity, structural genomics consortium, SGC, immune system; HET: GDP; 2.21A {Homo sapiens} PDB: 3v70_A*
Probab=92.14 E-value=0.081 Score=52.77 Aligned_cols=27 Identities=22% Similarity=0.289 Sum_probs=23.1
Q ss_pred CcceEEEEECCCCCcHHHHHHHHHHhC
Q 006117 64 HGIILVGVAGPSGAGKTVFTEKVLNFM 90 (660)
Q Consensus 64 e~~~IIGI~GpSGSGKSTLak~L~~lL 90 (660)
...+-|+|+|.+|+|||||++.|.+.-
T Consensus 19 ~~~l~I~lvG~~g~GKSSlin~l~~~~ 45 (247)
T 3lxw_A 19 ESTRRLILVGRTGAGKSATGNSILGQR 45 (247)
T ss_dssp -CEEEEEEESSTTSSHHHHHHHHHTSC
T ss_pred CCceEEEEECCCCCcHHHHHHHHhCCC
Confidence 446789999999999999999998763
No 393
>1ksh_A ARF-like protein 2; small GTPase, small GTP-binding protein, ARF family; HET: CME GDP; 1.80A {Mus musculus} SCOP: c.37.1.8 PDB: 1ksg_A* 1ksj_A* 3doe_A* 3dof_A*
Probab=92.13 E-value=0.076 Score=49.13 Aligned_cols=26 Identities=23% Similarity=0.165 Sum_probs=21.8
Q ss_pred CcceEEEEECCCCCcHHHHHHHHHHh
Q 006117 64 HGIILVGVAGPSGAGKTVFTEKVLNF 89 (660)
Q Consensus 64 e~~~IIGI~GpSGSGKSTLak~L~~l 89 (660)
.+.+-|+|+|++|+|||||++.+.+.
T Consensus 16 ~~~~~i~v~G~~~~GKssl~~~l~~~ 41 (186)
T 1ksh_A 16 ERELRLLMLGLDNAGKTTILKKFNGE 41 (186)
T ss_dssp -CCEEEEEECSTTSSHHHHHHHHTTC
T ss_pred CCeeEEEEECCCCCCHHHHHHHHhcC
Confidence 34578999999999999999988753
No 394
>1x3s_A RAS-related protein RAB-18; GTPase, GNP, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: GNP; 1.32A {Homo sapiens} SCOP: c.37.1.8
Probab=92.12 E-value=0.093 Score=48.57 Aligned_cols=24 Identities=21% Similarity=0.328 Sum_probs=21.7
Q ss_pred ceEEEEECCCCCcHHHHHHHHHHh
Q 006117 66 IILVGVAGPSGAGKTVFTEKVLNF 89 (660)
Q Consensus 66 ~~IIGI~GpSGSGKSTLak~L~~l 89 (660)
.+-|+|+|+.|+|||||++.|.+.
T Consensus 15 ~~~i~v~G~~~~GKssli~~l~~~ 38 (195)
T 1x3s_A 15 TLKILIIGESGVGKSSLLLRFTDD 38 (195)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHHS
T ss_pred ceEEEEECCCCCCHHHHHHHHHcC
Confidence 467999999999999999999875
No 395
>1m7b_A RND3/RHOE small GTP-binding protein; small GTPase, signaling protein; HET: GTP; 2.00A {Homo sapiens} SCOP: c.37.1.8 PDB: 2v55_B*
Probab=92.10 E-value=0.086 Score=48.96 Aligned_cols=25 Identities=24% Similarity=0.126 Sum_probs=22.0
Q ss_pred cceEEEEECCCCCcHHHHHHHHHHh
Q 006117 65 GIILVGVAGPSGAGKTVFTEKVLNF 89 (660)
Q Consensus 65 ~~~IIGI~GpSGSGKSTLak~L~~l 89 (660)
..+-|+|+|++|+|||||++.+.+.
T Consensus 6 ~~~ki~v~G~~~vGKSsli~~l~~~ 30 (184)
T 1m7b_A 6 VKCKIVVVGDSQCGKTALLHVFAKD 30 (184)
T ss_dssp CEEEEEEEESTTSSHHHHHHHHHHS
T ss_pred eEEEEEEECCCCCCHHHHHHHHhcC
Confidence 3467999999999999999999875
No 396
>3bwd_D RAC-like GTP-binding protein ARAC6; G domain, cytoplasm, lipoprotein, membrane, methylation, nucleotide-binding, prenylation, ----; HET: GDP; 1.53A {Arabidopsis thaliana} PDB: 2nty_C* 2wbl_C
Probab=92.08 E-value=0.094 Score=47.97 Aligned_cols=24 Identities=21% Similarity=0.174 Sum_probs=21.4
Q ss_pred ceEEEEECCCCCcHHHHHHHHHHh
Q 006117 66 IILVGVAGPSGAGKTVFTEKVLNF 89 (660)
Q Consensus 66 ~~IIGI~GpSGSGKSTLak~L~~l 89 (660)
.+-|+|+|.+|+|||||++.+...
T Consensus 8 ~~ki~v~G~~~~GKssl~~~~~~~ 31 (182)
T 3bwd_D 8 FIKCVTVGDGAVGKTCLLISYTSN 31 (182)
T ss_dssp CCEEEEECSTTSSHHHHHHHHHHS
T ss_pred eEEEEEECCCCCCHHHHHHHHhcC
Confidence 467999999999999999999865
No 397
>3hjn_A DTMP kinase, thymidylate kinase; ATP-binding, nucleotide biosynth nucleotide-binding, transferase, structural genomics; HET: ADP TYD; 2.10A {Thermotoga maritima}
Probab=92.04 E-value=0.073 Score=51.67 Aligned_cols=23 Identities=17% Similarity=0.482 Sum_probs=21.6
Q ss_pred EEEEECCCCCcHHHHHHHHHHhC
Q 006117 68 LVGVAGPSGAGKTVFTEKVLNFM 90 (660)
Q Consensus 68 IIGI~GpSGSGKSTLak~L~~lL 90 (660)
+|.|-|+.||||||.++.|+..|
T Consensus 2 fI~~EG~DGsGKsTq~~~L~~~L 24 (197)
T 3hjn_A 2 FITFEGIDGSGKSTQIQLLAQYL 24 (197)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHH
Confidence 68899999999999999999987
No 398
>1g8f_A Sulfate adenylyltransferase; alpha-beta protein, beta-barrel, rossmann-fold, kinase fold; 1.95A {Saccharomyces cerevisiae} SCOP: b.122.1.3 c.26.1.5 c.37.1.15 PDB: 1g8g_A* 1g8h_A* 1j70_A 1jec_A 1jed_A* 1jee_A*
Probab=92.00 E-value=0.07 Score=59.64 Aligned_cols=28 Identities=4% Similarity=-0.003 Sum_probs=24.8
Q ss_pred CcceEEEEECCCCCcHHHHHHHHHHhCC
Q 006117 64 HGIILVGVAGPSGAGKTVFTEKVLNFMP 91 (660)
Q Consensus 64 e~~~IIGI~GpSGSGKSTLak~L~~lLp 91 (660)
+...+|.|+|.+||||||+++.|+..+.
T Consensus 393 ~~~~~I~l~GlsGsGKSTIa~~La~~L~ 420 (511)
T 1g8f_A 393 KQGFSIVLGNSLTVSREQLSIALLSTFL 420 (511)
T ss_dssp GCCEEEEECTTCCSCHHHHHHHHHHHHT
T ss_pred ccceEEEecccCCCCHHHHHHHHHHHHH
Confidence 3446999999999999999999999984
No 399
>2cxx_A Probable GTP-binding protein ENGB; structural genomics, NPPSFA, national P protein structural and functional analyses; HET: GDP; 1.70A {Pyrococcus horikoshii} SCOP: c.37.1.8
Probab=91.99 E-value=0.065 Score=49.43 Aligned_cols=23 Identities=22% Similarity=0.258 Sum_probs=20.4
Q ss_pred eEEEEECCCCCcHHHHHHHHHHh
Q 006117 67 ILVGVAGPSGAGKTVFTEKVLNF 89 (660)
Q Consensus 67 ~IIGI~GpSGSGKSTLak~L~~l 89 (660)
+-|+|+|.+|+|||||++.+.+.
T Consensus 2 ~ki~v~G~~~~GKSsli~~l~~~ 24 (190)
T 2cxx_A 2 ATIIFAGRSNVGKSTLIYRLTGK 24 (190)
T ss_dssp CEEEEEEBTTSSHHHHHHHHHSC
T ss_pred cEEEEECCCCCCHHHHHHHHhCc
Confidence 35899999999999999998865
No 400
>1sxj_D Activator 1 41 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=91.98 E-value=0.028 Score=57.78 Aligned_cols=38 Identities=16% Similarity=0.127 Sum_probs=28.4
Q ss_pred EEEecceeeccCCcceEEEEECCCCCcHHHHHHHHHHhC
Q 006117 52 VIRACQLLAQKNHGIILVGVAGPSGAGKTVFTEKVLNFM 90 (660)
Q Consensus 52 vL~~Isl~i~~ge~~~IIGI~GpSGSGKSTLak~L~~lL 90 (660)
+++.+...+..+..+. +.|.||+|+||||+++.+++.+
T Consensus 45 ~~~~l~~~l~~~~~~~-~ll~G~~G~GKT~la~~la~~l 82 (353)
T 1sxj_D 45 AVTVLKKTLKSANLPH-MLFYGPPGTGKTSTILALTKEL 82 (353)
T ss_dssp THHHHHHHTTCTTCCC-EEEECSTTSSHHHHHHHHHHHH
T ss_pred HHHHHHHHHhcCCCCE-EEEECCCCCCHHHHHHHHHHHh
Confidence 3455555555554333 8899999999999999999886
No 401
>2atv_A RERG, RAS-like estrogen-regulated growth inhibitor; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8
Probab=91.97 E-value=0.11 Score=48.83 Aligned_cols=26 Identities=19% Similarity=0.395 Sum_probs=22.3
Q ss_pred CcceEEEEECCCCCcHHHHHHHHHHh
Q 006117 64 HGIILVGVAGPSGAGKTVFTEKVLNF 89 (660)
Q Consensus 64 e~~~IIGI~GpSGSGKSTLak~L~~l 89 (660)
.+.+-|+|+|.+|+|||||++.+.+.
T Consensus 26 ~~~~ki~v~G~~~vGKSsli~~l~~~ 51 (196)
T 2atv_A 26 SAEVKLAIFGRAGVGKSALVVRFLTK 51 (196)
T ss_dssp -CCEEEEEECCTTSSHHHHHHHHHHS
T ss_pred CCceEEEEECCCCCCHHHHHHHHHhC
Confidence 34578999999999999999999875
No 402
>3b1v_A Ferrous iron uptake transporter protein B; G protein, iron transport, GTPase, transmembrane, potassium; HET: GGM; 1.85A {Streptococcus thermophilus} PDB: 3b1w_A* 3lx5_A* 3lx8_A* 3ss8_A* 3b1z_A 3b1y_A* 3b1x_A* 3tah_A*
Probab=91.95 E-value=0.082 Score=53.93 Aligned_cols=24 Identities=17% Similarity=0.325 Sum_probs=21.6
Q ss_pred ceEEEEECCCCCcHHHHHHHHHHh
Q 006117 66 IILVGVAGPSGAGKTVFTEKVLNF 89 (660)
Q Consensus 66 ~~IIGI~GpSGSGKSTLak~L~~l 89 (660)
.+.|+|+|.+|+|||||++.|.+.
T Consensus 3 ~~kI~lvG~~nvGKSTL~n~L~g~ 26 (272)
T 3b1v_A 3 MTEIALIGNPNSGKTSLFNLITGH 26 (272)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHCC
T ss_pred ceEEEEECCCCCCHHHHHHHHHCC
Confidence 457999999999999999999875
No 403
>1zj6_A ADP-ribosylation factor-like protein 5; ARL, GTP-binding, transport protein; HET: G3D; 2.00A {Homo sapiens} SCOP: c.37.1.8
Probab=91.93 E-value=0.092 Score=48.81 Aligned_cols=26 Identities=27% Similarity=0.146 Sum_probs=22.5
Q ss_pred CcceEEEEECCCCCcHHHHHHHHHHh
Q 006117 64 HGIILVGVAGPSGAGKTVFTEKVLNF 89 (660)
Q Consensus 64 e~~~IIGI~GpSGSGKSTLak~L~~l 89 (660)
.+.+-|+|+|.+|+|||||++.+.+.
T Consensus 14 ~~~~~i~v~G~~~~GKssl~~~l~~~ 39 (187)
T 1zj6_A 14 HQEHKVIIVGLDNAGKTTILYQFSMN 39 (187)
T ss_dssp TSCEEEEEEESTTSSHHHHHHHHHTT
T ss_pred CCccEEEEECCCCCCHHHHHHHHhcC
Confidence 34578999999999999999999854
No 404
>3oes_A GTPase rhebl1; small GTPase, structural genomics, structural genomics conso SGC, hydrolase; HET: GNP; 2.30A {Homo sapiens}
Probab=91.93 E-value=0.091 Score=49.62 Aligned_cols=25 Identities=20% Similarity=0.143 Sum_probs=22.2
Q ss_pred cceEEEEECCCCCcHHHHHHHHHHh
Q 006117 65 GIILVGVAGPSGAGKTVFTEKVLNF 89 (660)
Q Consensus 65 ~~~IIGI~GpSGSGKSTLak~L~~l 89 (660)
+.+-|+|+|.+|+|||||++.|.+.
T Consensus 23 ~~~ki~vvG~~~~GKSsli~~l~~~ 47 (201)
T 3oes_A 23 RYRKVVILGYRCVGKTSLAHQFVEG 47 (201)
T ss_dssp CEEEEEEEESTTSSHHHHHHHHHHS
T ss_pred CcEEEEEECCCCcCHHHHHHHHHhC
Confidence 3567999999999999999999875
No 405
>3c5c_A RAS-like protein 12; GDP, GTPase, structural genomics consortium, SGC, limited proteolysis, GTP-binding, nucleotide-binding, signaling protein; HET: GDP; 1.85A {Homo sapiens}
Probab=91.92 E-value=0.11 Score=48.76 Aligned_cols=26 Identities=31% Similarity=0.374 Sum_probs=22.0
Q ss_pred CcceEEEEECCCCCcHHHHHHHHHHh
Q 006117 64 HGIILVGVAGPSGAGKTVFTEKVLNF 89 (660)
Q Consensus 64 e~~~IIGI~GpSGSGKSTLak~L~~l 89 (660)
.+.+-|+|+|.+|+|||||++.+.+.
T Consensus 19 ~~~~ki~vvG~~~vGKTsLi~~l~~~ 44 (187)
T 3c5c_A 19 PLEVNLAILGRRGAGKSALTVKFLTK 44 (187)
T ss_dssp -CEEEEEEECCTTSSHHHHHHHHHHS
T ss_pred CceEEEEEECCCCCcHHHHHHHHHhC
Confidence 34568999999999999999988865
No 406
>1xwi_A SKD1 protein; VPS4B, AAA ATPase, protein transport; 2.80A {Homo sapiens}
Probab=91.88 E-value=0.14 Score=53.27 Aligned_cols=34 Identities=18% Similarity=0.298 Sum_probs=26.6
Q ss_pred eEEEEECCCCCcHHHHHHHHHHhCCCceEEEecC
Q 006117 67 ILVGVAGPSGAGKTVFTEKVLNFMPSIAVITMDN 100 (660)
Q Consensus 67 ~IIGI~GpSGSGKSTLak~L~~lLp~~g~I~lDg 100 (660)
.-|.|.||+|+|||++++.++..+.....+.++.
T Consensus 46 ~~iLL~GppGtGKT~la~ala~~~~~~~~~~i~~ 79 (322)
T 1xwi_A 46 RGILLFGPPGTGKSYLAKAVATEANNSTFFSISS 79 (322)
T ss_dssp SEEEEESSSSSCHHHHHHHHHHHTTSCEEEEEEC
T ss_pred ceEEEECCCCccHHHHHHHHHHHcCCCcEEEEEh
Confidence 4788999999999999999999874344454443
No 407
>2fh5_B SR-beta, signal recognition particle receptor beta subunit; endomembrane targeting, GTPase, GAP, longin domain, SEDL, transport protein; HET: GTP; 2.45A {Mus musculus} SCOP: c.37.1.8 PDB: 2go5_2
Probab=91.87 E-value=0.094 Score=49.84 Aligned_cols=25 Identities=24% Similarity=0.208 Sum_probs=21.3
Q ss_pred cceEEEEECCCCCcHHHHHHHHHHh
Q 006117 65 GIILVGVAGPSGAGKTVFTEKVLNF 89 (660)
Q Consensus 65 ~~~IIGI~GpSGSGKSTLak~L~~l 89 (660)
+.+.|+|+|.+|+|||||++.+.+.
T Consensus 6 ~~~ki~vvG~~~~GKTsli~~l~~~ 30 (214)
T 2fh5_B 6 SQRAVLFVGLCDSGKTLLFVRLLTG 30 (214)
T ss_dssp --CEEEEECSTTSSHHHHHHHHHHS
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCC
Confidence 3568999999999999999999875
No 408
>3syl_A Protein CBBX; photosynthesis, rubisco activase, AAA+ protein, calvin cycle chaperone; 3.00A {Rhodobacter sphaeroides} PDB: 3syk_A 3zuh_A*
Probab=91.85 E-value=0.081 Score=53.50 Aligned_cols=25 Identities=24% Similarity=0.472 Sum_probs=22.1
Q ss_pred ceEEEEECCCCCcHHHHHHHHHHhC
Q 006117 66 IILVGVAGPSGAGKTVFTEKVLNFM 90 (660)
Q Consensus 66 ~~IIGI~GpSGSGKSTLak~L~~lL 90 (660)
..-+.|.||+|+||||+++.++..+
T Consensus 67 ~~~vll~G~~GtGKT~la~~la~~l 91 (309)
T 3syl_A 67 TLHMSFTGNPGTGKTTVALKMAGLL 91 (309)
T ss_dssp CCEEEEEECTTSSHHHHHHHHHHHH
T ss_pred CceEEEECCCCCCHHHHHHHHHHHH
Confidence 4478999999999999999998876
No 409
>2h17_A ADP-ribosylation factor-like protein 5A; GDP, GTPase, membrane trafficking, structural genomics consortium, SGC, transport protein; HET: GDP; 1.70A {Homo sapiens} PDB: 2h16_A* 1z6y_A* 1yzg_A*
Probab=91.82 E-value=0.075 Score=49.23 Aligned_cols=26 Identities=23% Similarity=0.067 Sum_probs=21.7
Q ss_pred CcceEEEEECCCCCcHHHHHHHHHHh
Q 006117 64 HGIILVGVAGPSGAGKTVFTEKVLNF 89 (660)
Q Consensus 64 e~~~IIGI~GpSGSGKSTLak~L~~l 89 (660)
.+.+-|+|+|..|+|||||++.+.+.
T Consensus 19 ~~~~~i~v~G~~~~GKSsli~~l~~~ 44 (181)
T 2h17_A 19 SQEHKVIIVGLDNAGKTTILYQFSMN 44 (181)
T ss_dssp --CEEEEEEEETTSSHHHHHHHHHTT
T ss_pred CceeEEEEECCCCCCHHHHHHHHhcC
Confidence 34568999999999999999999865
No 410
>3n70_A Transport activator; sigma-54, ntpase, PSI, MCSG, structural genomics, center for structural genomics; 2.80A {Escherichia coli}
Probab=91.80 E-value=0.096 Score=47.69 Aligned_cols=23 Identities=22% Similarity=0.274 Sum_probs=21.0
Q ss_pred EEEEECCCCCcHHHHHHHHHHhC
Q 006117 68 LVGVAGPSGAGKTVFTEKVLNFM 90 (660)
Q Consensus 68 IIGI~GpSGSGKSTLak~L~~lL 90 (660)
-|.|.|++|+|||++++.|....
T Consensus 26 ~vll~G~~GtGKt~lA~~i~~~~ 48 (145)
T 3n70_A 26 AVWLYGAPGTGRMTGARYLHQFG 48 (145)
T ss_dssp CEEEESSTTSSHHHHHHHHHHSS
T ss_pred CEEEECCCCCCHHHHHHHHHHhC
Confidence 47799999999999999999875
No 411
>1zd9_A ADP-ribosylation factor-like 10B; transport protein, GDP-binding, membrane trafficking, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2al7_A* 2h18_A*
Probab=91.80 E-value=0.11 Score=48.63 Aligned_cols=24 Identities=21% Similarity=0.242 Sum_probs=21.5
Q ss_pred ceEEEEECCCCCcHHHHHHHHHHh
Q 006117 66 IILVGVAGPSGAGKTVFTEKVLNF 89 (660)
Q Consensus 66 ~~IIGI~GpSGSGKSTLak~L~~l 89 (660)
.+-|+|+|..|+|||||++.+.+.
T Consensus 22 ~~ki~v~G~~~~GKSsli~~l~~~ 45 (188)
T 1zd9_A 22 EMELTLVGLQYSGKTTFVNVIASG 45 (188)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHHS
T ss_pred ccEEEEECCCCCCHHHHHHHHHcC
Confidence 467999999999999999999864
No 412
>2j37_W Signal recognition particle 54 kDa protein (SRP54); ribosome, SRP, translation/RNA; 8.00A {Canis SP} PDB: 1wgw_A
Probab=91.78 E-value=0.14 Score=57.17 Aligned_cols=38 Identities=21% Similarity=0.296 Sum_probs=28.4
Q ss_pred CcceEEEEECCCCCcHHHHHHHHHHhC----CCceEEEecCc
Q 006117 64 HGIILVGVAGPSGAGKTVFTEKVLNFM----PSIAVITMDNY 101 (660)
Q Consensus 64 e~~~IIGI~GpSGSGKSTLak~L~~lL----p~~g~I~lDg~ 101 (660)
.++.+|+|+|++|+||||++..|+..+ .....|..|-+
T Consensus 99 ~~~~vI~ivG~~GvGKTTl~~kLA~~l~~~G~kVllVd~D~~ 140 (504)
T 2j37_W 99 GKQNVIMFVGLQGSGKTTTCSKLAYYYQRKGWKTCLICADTF 140 (504)
T ss_dssp S--EEEEEECSTTSSHHHHHHHHHHHHHHTTCCEEEEEECCS
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHHHhCCCeEEEEecccc
Confidence 456799999999999999999999765 14556666544
No 413
>1ko7_A HPR kinase/phosphatase; protein kinase, phosphotransfer, protein phosphatase, dual activity, product, substrate, transferase, hydrolase; 1.95A {Staphylococcus xylosus} SCOP: c.98.2.1 c.91.1.2
Probab=91.73 E-value=0.13 Score=54.07 Aligned_cols=37 Identities=16% Similarity=0.093 Sum_probs=30.1
Q ss_pred ceEEEEecceeeccCCcceEEEEECCCCCcHHHHHHHHHHh
Q 006117 49 FFIVIRACQLLAQKNHGIILVGVAGPSGAGKTVFTEKVLNF 89 (660)
Q Consensus 49 ~~~vL~~Isl~i~~ge~~~IIGI~GpSGSGKSTLak~L~~l 89 (660)
....+++.-+.+ .|. -|.|+|+||+||||++..|.+.
T Consensus 131 ~~~~~H~~~v~~-~g~---~vl~~G~sG~GKSt~a~~l~~~ 167 (314)
T 1ko7_A 131 RTTSLHGVLVDV-YGV---GVLITGDSGIGKSETALELIKR 167 (314)
T ss_dssp EEEEEESEEEEE-TTE---EEEEEESTTSSHHHHHHHHHHT
T ss_pred cceeeeEEEEEE-CCE---EEEEEeCCCCCHHHHHHHHHhc
Confidence 346788876666 455 7999999999999999999885
No 414
>3cph_A RAS-related protein SEC4; RAB GTPase, prenylation, vesicular transport, cytoplasm, cytoplasmic vesicle, exocytosis, GTP-binding; HET: GDP; 2.90A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=91.69 E-value=0.11 Score=48.88 Aligned_cols=25 Identities=24% Similarity=0.406 Sum_probs=21.6
Q ss_pred cceEEEEECCCCCcHHHHHHHHHHh
Q 006117 65 GIILVGVAGPSGAGKTVFTEKVLNF 89 (660)
Q Consensus 65 ~~~IIGI~GpSGSGKSTLak~L~~l 89 (660)
..+-|+|+|++|+|||||++.|.+.
T Consensus 19 ~~~~i~v~G~~~~GKSsli~~l~~~ 43 (213)
T 3cph_A 19 SIMKILLIGDSGVGKSCLLVRFVED 43 (213)
T ss_dssp -CEEEEEECSTTSSHHHHHHHHHHC
T ss_pred cceEEEEECCCCCCHHHHHHHHHhC
Confidence 3468999999999999999999864
No 415
>2v3c_C SRP54, signal recognition 54 kDa protein; nucleotide-binding, signal recognition particle, GTP-binding, RNA-binding; 2.50A {Methanocaldococcus jannaschii} PDB: 3ndb_B
Probab=91.66 E-value=0.064 Score=58.61 Aligned_cols=37 Identities=27% Similarity=0.426 Sum_probs=28.1
Q ss_pred cceEEEEECCCCCcHHHHHHHHHHhC----CCceEEEecCc
Q 006117 65 GIILVGVAGPSGAGKTVFTEKVLNFM----PSIAVITMDNY 101 (660)
Q Consensus 65 ~~~IIGI~GpSGSGKSTLak~L~~lL----p~~g~I~lDg~ 101 (660)
++.+|+|+|++|+||||++..|+..+ .....+..|-+
T Consensus 98 ~~~vI~ivG~~GvGKTTla~~La~~l~~~G~kVllv~~D~~ 138 (432)
T 2v3c_C 98 KQNVILLVGIQGSGKTTTAAKLARYIQKRGLKPALIAADTY 138 (432)
T ss_dssp SCCCEEEECCSSSSTTHHHHHHHHHHHHHHCCEEEECCSCC
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEEecccc
Confidence 35689999999999999999999886 13444444443
No 416
>2bcg_Y Protein YP2, GTP-binding protein YPT1; RABGTPase, geranylgeranylation, vesicular transport, protein transport; HET: GDP GER; 1.48A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1ukv_Y* 3cue_F* 1yzn_A* 3sfv_A* 2wwx_A 2fol_A* 3nkv_A* 3jza_A* 2rhd_A*
Probab=91.65 E-value=0.11 Score=49.04 Aligned_cols=26 Identities=19% Similarity=0.241 Sum_probs=22.5
Q ss_pred CcceEEEEECCCCCcHHHHHHHHHHh
Q 006117 64 HGIILVGVAGPSGAGKTVFTEKVLNF 89 (660)
Q Consensus 64 e~~~IIGI~GpSGSGKSTLak~L~~l 89 (660)
+..+-|+|+|++|+|||||++.|.+.
T Consensus 6 ~~~~ki~v~G~~~~GKSsli~~l~~~ 31 (206)
T 2bcg_Y 6 DYLFKLLLIGNSGVGKSCLLLRFSDD 31 (206)
T ss_dssp SEEEEEEEEESTTSSHHHHHHHHHHC
T ss_pred CcceEEEEECCCCCCHHHHHHHHhcC
Confidence 34568999999999999999999875
No 417
>2qtf_A Protein HFLX, GTP-binding protein; beta-alpha-barrels, nucleotide-binding, nucleotide binding protein; 2.00A {Sulfolobus solfataricus P2} PDB: 2qth_A* 3kxi_A* 3kxl_A 3kxk_A
Probab=91.61 E-value=0.078 Score=56.53 Aligned_cols=24 Identities=21% Similarity=0.405 Sum_probs=21.2
Q ss_pred eEEEEECCCCCcHHHHHHHHHHhC
Q 006117 67 ILVGVAGPSGAGKTVFTEKVLNFM 90 (660)
Q Consensus 67 ~IIGI~GpSGSGKSTLak~L~~lL 90 (660)
.+|+|+|++|||||||++.|.+..
T Consensus 180 ~~V~lvG~~naGKSTLln~L~~~~ 203 (364)
T 2qtf_A 180 PSIGIVGYTNSGKTSLFNSLTGLT 203 (364)
T ss_dssp CEEEEECBTTSSHHHHHHHHHCC-
T ss_pred cEEEEECCCCCCHHHHHHHHHCCC
Confidence 469999999999999999998763
No 418
>1c9k_A COBU, adenosylcobinamide kinase; alpha/beta structure rossmann fold P-loop, transferase; HET: 5GP; 2.20A {Salmonella typhimurium} SCOP: c.37.1.11 PDB: 1cbu_A
Probab=91.60 E-value=0.076 Score=51.49 Aligned_cols=22 Identities=23% Similarity=0.383 Sum_probs=19.4
Q ss_pred EEEEECCCCCcHHHHHHHHHHh
Q 006117 68 LVGVAGPSGAGKTVFTEKVLNF 89 (660)
Q Consensus 68 IIGI~GpSGSGKSTLak~L~~l 89 (660)
++.|+|++||||||++..++..
T Consensus 1 ~ilV~Gg~~SGKS~~A~~la~~ 22 (180)
T 1c9k_A 1 MILVTGGARSGKSRHAEALIGD 22 (180)
T ss_dssp CEEEEECTTSSHHHHHHHHHCS
T ss_pred CEEEECCCCCcHHHHHHHHHhc
Confidence 3679999999999999998865
No 419
>2iwr_A Centaurin gamma 1; ANK repeat, zinc-finger, GTP-binding, polymorphism, nucleotide-binding, alternative splicing, protein transport; HET: CAF; 1.5A {Homo sapiens} PDB: 2bmj_A
Probab=91.59 E-value=0.094 Score=48.00 Aligned_cols=25 Identities=24% Similarity=0.377 Sum_probs=21.9
Q ss_pred cceEEEEECCCCCcHHHHHHHHHHh
Q 006117 65 GIILVGVAGPSGAGKTVFTEKVLNF 89 (660)
Q Consensus 65 ~~~IIGI~GpSGSGKSTLak~L~~l 89 (660)
+.+-|+|+|.+|+|||||++.+.+.
T Consensus 6 ~~~ki~~vG~~~vGKTsli~~l~~~ 30 (178)
T 2iwr_A 6 PELRLGVLGDARSGKSSLIHRFLTG 30 (178)
T ss_dssp CEEEEEEECCGGGCHHHHHHHHHHS
T ss_pred CceEEEEECCCCCCHHHHHHHHHhC
Confidence 3467999999999999999999875
No 420
>2chg_A Replication factor C small subunit; DNA-binding protein, DNA replication, clamp loader, AAA+ ATPase, ATP-binding, nucleotide-binding; HET: ANP; 2.1A {Archaeoglobus fulgidus}
Probab=91.59 E-value=0.1 Score=48.81 Aligned_cols=23 Identities=26% Similarity=0.369 Sum_probs=20.9
Q ss_pred EEEEECCCCCcHHHHHHHHHHhC
Q 006117 68 LVGVAGPSGAGKTVFTEKVLNFM 90 (660)
Q Consensus 68 IIGI~GpSGSGKSTLak~L~~lL 90 (660)
.+.|.||.|+||||+++.++..+
T Consensus 40 ~~ll~G~~G~GKT~l~~~l~~~~ 62 (226)
T 2chg_A 40 HLLFSGPPGTGKTATAIALARDL 62 (226)
T ss_dssp CEEEECSTTSSHHHHHHHHHHHH
T ss_pred eEEEECCCCCCHHHHHHHHHHHH
Confidence 38899999999999999998875
No 421
>2r6a_A DNAB helicase, replicative helicase; replication, DNAB; 2.90A {Geobacillus stearothermophilus} PDB: 2r6c_A 2r6d_A 2r6e_A 2vyf_A 2vye_A
Probab=91.57 E-value=0.068 Score=58.25 Aligned_cols=36 Identities=22% Similarity=0.233 Sum_probs=31.2
Q ss_pred EEEecceeeccCCcceEEEEECCCCCcHHHHHHHHHHhC
Q 006117 52 VIRACQLLAQKNHGIILVGVAGPSGAGKTVFTEKVLNFM 90 (660)
Q Consensus 52 vL~~Isl~i~~ge~~~IIGI~GpSGSGKSTLak~L~~lL 90 (660)
.|+.+..-+++|+ ++.|+|++|+|||||+..++...
T Consensus 192 ~LD~~~gGl~~G~---liiI~G~pG~GKTtl~l~ia~~~ 227 (454)
T 2r6a_A 192 ELDRMTSGFQRSD---LIIVAARPSVGKTAFALNIAQNV 227 (454)
T ss_dssp HHHHHHSSBCTTC---EEEEECCTTSCHHHHHHHHHHHH
T ss_pred HHHhhcCCCCCCC---EEEEECCCCCCHHHHHHHHHHHH
Confidence 4666666688899 99999999999999999998875
No 422
>2ew1_A RAS-related protein RAB-30; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GNP; 2.00A {Homo sapiens} SCOP: c.37.1.8
Probab=91.54 E-value=0.11 Score=49.71 Aligned_cols=26 Identities=19% Similarity=0.295 Sum_probs=22.5
Q ss_pred CcceEEEEECCCCCcHHHHHHHHHHh
Q 006117 64 HGIILVGVAGPSGAGKTVFTEKVLNF 89 (660)
Q Consensus 64 e~~~IIGI~GpSGSGKSTLak~L~~l 89 (660)
+..+-|+|+|.+|+|||||++.+.+.
T Consensus 24 ~~~~ki~lvG~~~vGKSsLi~~l~~~ 49 (201)
T 2ew1_A 24 DFLFKIVLIGNAGVGKTCLVRRFTQG 49 (201)
T ss_dssp SEEEEEEEEESTTSSHHHHHHHHHHS
T ss_pred ccceEEEEECcCCCCHHHHHHHHHhC
Confidence 34568999999999999999998865
No 423
>1yrb_A ATP(GTP)binding protein; GTPase, P-loop, rossman fold, GDP, HYDR; HET: GDP; 1.75A {Pyrococcus abyssi} SCOP: c.37.1.10 PDB: 1yr6_A* 1yr8_A* 1yr9_A* 1yra_A* 1yr7_A* 2oxr_A*
Probab=91.50 E-value=0.11 Score=51.09 Aligned_cols=39 Identities=23% Similarity=0.487 Sum_probs=29.7
Q ss_pred ccCCcceEEEEECCCCCcHHHHHHHHHHhCC---CceEEEec
Q 006117 61 QKNHGIILVGVAGPSGAGKTVFTEKVLNFMP---SIAVITMD 99 (660)
Q Consensus 61 ~~ge~~~IIGI~GpSGSGKSTLak~L~~lLp---~~g~I~lD 99 (660)
..|.++.++.+.|..|+||||++..|+..+. ....|..|
T Consensus 9 ~~~~~~~i~~~~GkgGvGKTTl~~~La~~l~~g~~v~vvd~D 50 (262)
T 1yrb_A 9 HHGMASMIVVFVGTAGSGKTTLTGEFGRYLEDNYKVAYVNLD 50 (262)
T ss_dssp CTTCCCEEEEEECSTTSSHHHHHHHHHHHHTTTSCEEEEECC
T ss_pred cCCcceEEEEEeCCCCCCHHHHHHHHHHHHHCCCeEEEEeCC
Confidence 4566778999999999999999999986542 34455544
No 424
>4bas_A ADP-ribosylation factor, putative (small GTPase, putative); hydrolase; HET: GNP; 2.00A {Trypanosoma brucei TREU927}
Probab=91.48 E-value=0.11 Score=48.23 Aligned_cols=27 Identities=22% Similarity=0.263 Sum_probs=21.7
Q ss_pred CCcceEEEEECCCCCcHHHHHHHHHHh
Q 006117 63 NHGIILVGVAGPSGAGKTVFTEKVLNF 89 (660)
Q Consensus 63 ge~~~IIGI~GpSGSGKSTLak~L~~l 89 (660)
......|+|+|.+|+|||||++.+.+.
T Consensus 14 ~~~~~ki~v~G~~~~GKSsl~~~l~~~ 40 (199)
T 4bas_A 14 SKTKLQVVMCGLDNSGKTTIINQVKPA 40 (199)
T ss_dssp --CEEEEEEECCTTSCHHHHHHHHSCC
T ss_pred CCCCcEEEEECCCCCCHHHHHHHHhcC
Confidence 344578999999999999999988754
No 425
>1zbd_A Rabphilin-3A; G protein, effector, RABCDR, synaptic exocytosis, RAB protein, RAB3A; HET: GTP; 2.60A {Rattus norvegicus} SCOP: c.37.1.8
Probab=91.46 E-value=0.11 Score=48.89 Aligned_cols=24 Identities=25% Similarity=0.307 Sum_probs=21.4
Q ss_pred ceEEEEECCCCCcHHHHHHHHHHh
Q 006117 66 IILVGVAGPSGAGKTVFTEKVLNF 89 (660)
Q Consensus 66 ~~IIGI~GpSGSGKSTLak~L~~l 89 (660)
.+-|+|+|+.|+|||||++.|.+.
T Consensus 8 ~~ki~v~G~~~~GKSsli~~l~~~ 31 (203)
T 1zbd_A 8 MFKILIIGNSSVGKTSFLFRYADD 31 (203)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHTC
T ss_pred eeEEEEECCCCCCHHHHHHHHhcC
Confidence 467999999999999999998865
No 426
>3hws_A ATP-dependent CLP protease ATP-binding subunit CL; CLPXP, AAA+ molecular machine, hexamer, asymmetric,, ATP-BIN chaperone, metal-binding; HET: ADP; 3.25A {Escherichia coli} PDB: 3hte_A
Probab=91.39 E-value=0.14 Score=53.63 Aligned_cols=24 Identities=29% Similarity=0.617 Sum_probs=22.1
Q ss_pred eEEEEECCCCCcHHHHHHHHHHhC
Q 006117 67 ILVGVAGPSGAGKTVFTEKVLNFM 90 (660)
Q Consensus 67 ~IIGI~GpSGSGKSTLak~L~~lL 90 (660)
.-+.|.||+|+||||+++.|+..+
T Consensus 52 ~~vll~GppGtGKT~la~~ia~~~ 75 (363)
T 3hws_A 52 SNILLIGPTGSGKTLLAETLARLL 75 (363)
T ss_dssp CCEEEECCTTSSHHHHHHHHHHHT
T ss_pred CeEEEECCCCCCHHHHHHHHHHHc
Confidence 368899999999999999999987
No 427
>1l8q_A Chromosomal replication initiator protein DNAA; AAA+, helix-turn-helix, nucleotide-binding, DNA binding, REP initiation, DNA binding protein; HET: ADP; 2.70A {Aquifex aeolicus} SCOP: a.4.12.2 c.37.1.20 PDB: 3r8f_A* 2hcb_A*
Probab=91.37 E-value=0.1 Score=53.60 Aligned_cols=24 Identities=25% Similarity=0.198 Sum_probs=21.8
Q ss_pred eEEEEECCCCCcHHHHHHHHHHhC
Q 006117 67 ILVGVAGPSGAGKTVFTEKVLNFM 90 (660)
Q Consensus 67 ~IIGI~GpSGSGKSTLak~L~~lL 90 (660)
..+.|.||+|+||||+++.++..+
T Consensus 38 ~~lll~G~~GtGKT~la~~i~~~~ 61 (324)
T 1l8q_A 38 NPIFIYGSVGTGKTHLLQAAGNEA 61 (324)
T ss_dssp SSEEEECSSSSSHHHHHHHHHHHH
T ss_pred CeEEEECCCCCcHHHHHHHHHHHH
Confidence 468899999999999999999876
No 428
>3tqf_A HPR(Ser) kinase; transferase, hydrolase; 2.80A {Coxiella burnetii}
Probab=91.33 E-value=0.13 Score=50.01 Aligned_cols=34 Identities=18% Similarity=0.200 Sum_probs=25.5
Q ss_pred EEEecceeeccCCcceEEEEECCCCCcHHHHHHHHHHh
Q 006117 52 VIRACQLLAQKNHGIILVGVAGPSGAGKTVFTEKVLNF 89 (660)
Q Consensus 52 vL~~Isl~i~~ge~~~IIGI~GpSGSGKSTLak~L~~l 89 (660)
.+++.-..+ .|. -|.|.|+||+||||++-.|...
T Consensus 6 ~lHas~v~v-~G~---gvli~G~SGaGKStlal~L~~r 39 (181)
T 3tqf_A 6 TWHANFLVI-DKM---GVLITGEANIGKSELSLALIDR 39 (181)
T ss_dssp EEESEEEEE-TTE---EEEEEESSSSSHHHHHHHHHHT
T ss_pred EEEEEEEEE-CCE---EEEEEcCCCCCHHHHHHHHHHc
Confidence 455544444 344 6899999999999999988875
No 429
>2qu8_A Putative nucleolar GTP-binding protein 1; GTPase, malaria, structural genomics, structural genomics consortium, SGC, unknown function; HET: GDP; 2.01A {Plasmodium falciparum}
Probab=91.32 E-value=0.1 Score=50.65 Aligned_cols=26 Identities=19% Similarity=0.208 Sum_probs=22.7
Q ss_pred CcceEEEEECCCCCcHHHHHHHHHHh
Q 006117 64 HGIILVGVAGPSGAGKTVFTEKVLNF 89 (660)
Q Consensus 64 e~~~IIGI~GpSGSGKSTLak~L~~l 89 (660)
.+.+.|+|+|.+|+|||||++.|.+.
T Consensus 27 ~~~~kI~vvG~~~vGKSsLin~l~~~ 52 (228)
T 2qu8_A 27 PHKKTIILSGAPNVGKSSFMNIVSRA 52 (228)
T ss_dssp TTSEEEEEECSTTSSHHHHHHHHTTT
T ss_pred CCCCEEEEECCCCCCHHHHHHHHhCC
Confidence 45678999999999999999998764
No 430
>3dz8_A RAS-related protein RAB-3B; GDP, GTPase, structural genomics consortium, SGC, cell GTP-binding, lipoprotein, membrane, methylation; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8
Probab=91.32 E-value=0.12 Score=48.38 Aligned_cols=26 Identities=23% Similarity=0.208 Sum_probs=22.6
Q ss_pred cceEEEEECCCCCcHHHHHHHHHHhC
Q 006117 65 GIILVGVAGPSGAGKTVFTEKVLNFM 90 (660)
Q Consensus 65 ~~~IIGI~GpSGSGKSTLak~L~~lL 90 (660)
..+-|+|+|..|+|||||++.+.+.-
T Consensus 22 ~~~ki~v~G~~~~GKSsli~~l~~~~ 47 (191)
T 3dz8_A 22 YMFKLLIIGNSSVGKTSFLFRYADDT 47 (191)
T ss_dssp ECEEEEEEESTTSSHHHHHHHHHHHT
T ss_pred eeeEEEEECCCCcCHHHHHHHHhcCC
Confidence 34679999999999999999998764
No 431
>3i8s_A Ferrous iron transport protein B; GTPase, GPCR, iron uptake, FEO, cell inner membrane, cell ME GTP-binding, ION transport, membrane; 1.80A {Escherichia coli} PDB: 3i8x_A* 3i92_A* 3hyr_A 3hyt_A* 2wic_A* 2wib_A* 2wia_A*
Probab=91.27 E-value=0.11 Score=52.84 Aligned_cols=24 Identities=21% Similarity=0.422 Sum_probs=21.8
Q ss_pred ceEEEEECCCCCcHHHHHHHHHHh
Q 006117 66 IILVGVAGPSGAGKTVFTEKVLNF 89 (660)
Q Consensus 66 ~~IIGI~GpSGSGKSTLak~L~~l 89 (660)
++.|+|+|.+|||||||++.|.+.
T Consensus 3 ~~~I~lvG~~n~GKSTLin~l~g~ 26 (274)
T 3i8s_A 3 KLTIGLIGNPNSGKTTLFNQLTGS 26 (274)
T ss_dssp CEEEEEEECTTSSHHHHHHHHHTT
T ss_pred ccEEEEECCCCCCHHHHHHHHhCC
Confidence 468999999999999999999875
No 432
>2o52_A RAS-related protein RAB-4B; G-protein, GDP, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.20A {Homo sapiens}
Probab=91.25 E-value=0.1 Score=49.40 Aligned_cols=26 Identities=19% Similarity=0.323 Sum_probs=21.7
Q ss_pred CcceEEEEECCCCCcHHHHHHHHHHh
Q 006117 64 HGIILVGVAGPSGAGKTVFTEKVLNF 89 (660)
Q Consensus 64 e~~~IIGI~GpSGSGKSTLak~L~~l 89 (660)
+..+-|+|+|.+|+|||||++.+.+.
T Consensus 23 ~~~~ki~v~G~~~~GKSsLi~~l~~~ 48 (200)
T 2o52_A 23 DFLFKFLVIGSAGTGKSCLLHQFIEN 48 (200)
T ss_dssp CEEEEEEEEESTTSSHHHHHHHHHC-
T ss_pred CcceEEEEECcCCCCHHHHHHHHHhC
Confidence 34568999999999999999998754
No 433
>3llm_A ATP-dependent RNA helicase A; alpha-beta-alpha, structural genomics, structural genomics consortium, SGC, activator, ATP-binding, DNA-binding; HET: ADP; 2.80A {Homo sapiens}
Probab=91.25 E-value=0.1 Score=51.20 Aligned_cols=26 Identities=27% Similarity=0.434 Sum_probs=21.0
Q ss_pred eccCCcceEEEEECCCCCcHHHHHHHHHH
Q 006117 60 AQKNHGIILVGVAGPSGAGKTVFTEKVLN 88 (660)
Q Consensus 60 i~~ge~~~IIGI~GpSGSGKSTLak~L~~ 88 (660)
+..|+ .+.|.|++||||||++..+.-
T Consensus 73 i~~g~---~~~i~g~TGsGKTt~~~~~~~ 98 (235)
T 3llm_A 73 ISQNS---VVIIRGATGCGKTTQVPQFIL 98 (235)
T ss_dssp HHHCS---EEEEECCTTSSHHHHHHHHHH
T ss_pred HhcCC---EEEEEeCCCCCcHHhHHHHHh
Confidence 45677 999999999999998776543
No 434
>2il1_A RAB12; G-protein, GDP, GTPase, predicted, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.10A {Homo sapiens}
Probab=91.20 E-value=0.13 Score=48.23 Aligned_cols=26 Identities=27% Similarity=0.316 Sum_probs=21.3
Q ss_pred CcceEEEEECCCCCcHHHHHHHHHHh
Q 006117 64 HGIILVGVAGPSGAGKTVFTEKVLNF 89 (660)
Q Consensus 64 e~~~IIGI~GpSGSGKSTLak~L~~l 89 (660)
...+-|+|+|.+|+|||||++.|.+.
T Consensus 24 ~~~~ki~vvG~~~~GKSsLi~~l~~~ 49 (192)
T 2il1_A 24 DFKLQVIIIGSRGVGKTSLMERFTDD 49 (192)
T ss_dssp SEEEEEEEECSTTSSHHHHHHHHCC-
T ss_pred CCceEEEEECCCCCCHHHHHHHHhcC
Confidence 33467999999999999999988653
No 435
>4dhe_A Probable GTP-binding protein ENGB; melioidosis, RAS-like GTPase, cell division, cell cycle, SEP GTP-binding; 2.20A {Burkholderia thailandensis}
Probab=91.15 E-value=0.059 Score=51.51 Aligned_cols=25 Identities=28% Similarity=0.206 Sum_probs=22.0
Q ss_pred cceEEEEECCCCCcHHHHHHHHHHh
Q 006117 65 GIILVGVAGPSGAGKTVFTEKVLNF 89 (660)
Q Consensus 65 ~~~IIGI~GpSGSGKSTLak~L~~l 89 (660)
..+.|+|+|.+|+|||||++.|.+.
T Consensus 28 ~~~~i~v~G~~~~GKSslin~l~~~ 52 (223)
T 4dhe_A 28 VQPEIAFAGRSNAGKSTAINVLCNQ 52 (223)
T ss_dssp CSCEEEEEESCHHHHHHHHHHHTTC
T ss_pred CCCEEEEEcCCCCCHHHHHHHHhCC
Confidence 3568999999999999999998765
No 436
>2f7s_A C25KG, RAS-related protein RAB-27B; G-protein, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 2.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2iez_A*
Probab=91.14 E-value=0.13 Score=49.01 Aligned_cols=26 Identities=31% Similarity=0.346 Sum_probs=22.6
Q ss_pred CcceEEEEECCCCCcHHHHHHHHHHh
Q 006117 64 HGIILVGVAGPSGAGKTVFTEKVLNF 89 (660)
Q Consensus 64 e~~~IIGI~GpSGSGKSTLak~L~~l 89 (660)
+..+-|+|+|..|+|||||++.|.+.
T Consensus 23 ~~~~ki~vvG~~~~GKSsLi~~l~~~ 48 (217)
T 2f7s_A 23 DYLIKLLALGDSGVGKTTFLYRYTDN 48 (217)
T ss_dssp SEEEEEEEESCTTSSHHHHHHHHHCS
T ss_pred ceeEEEEEECcCCCCHHHHHHHHhcC
Confidence 44568999999999999999999865
No 437
>2e87_A Hypothetical protein PH1320; GTP-binding, GTPase, OBG, bundle, GDP, complex, structural G NPPSFA; HET: GDP; 2.35A {Pyrococcus horikoshii}
Probab=91.12 E-value=0.082 Score=55.64 Aligned_cols=26 Identities=23% Similarity=0.276 Sum_probs=22.8
Q ss_pred cceEEEEECCCCCcHHHHHHHHHHhC
Q 006117 65 GIILVGVAGPSGAGKTVFTEKVLNFM 90 (660)
Q Consensus 65 ~~~IIGI~GpSGSGKSTLak~L~~lL 90 (660)
....|+|+|++|+|||||++.|.+..
T Consensus 166 ~~~~v~lvG~~gvGKSTLin~L~~~~ 191 (357)
T 2e87_A 166 EIPTVVIAGHPNVGKSTLLKALTTAK 191 (357)
T ss_dssp SSCEEEEECSTTSSHHHHHHHHCSSC
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCC
Confidence 45689999999999999999998754
No 438
>1d2n_A N-ethylmaleimide-sensitive fusion protein; hexamerization domain, ATPase, transport; HET: ANP; 1.75A {Cricetulus griseus} SCOP: c.37.1.20 PDB: 1nsf_A*
Probab=91.11 E-value=0.15 Score=50.96 Aligned_cols=27 Identities=26% Similarity=0.405 Sum_probs=23.4
Q ss_pred CcceEEEEECCCCCcHHHHHHHHHHhC
Q 006117 64 HGIILVGVAGPSGAGKTVFTEKVLNFM 90 (660)
Q Consensus 64 e~~~IIGI~GpSGSGKSTLak~L~~lL 90 (660)
..+.-+.|.||+|+||||+++.++..+
T Consensus 62 ~~~~~vLl~G~~GtGKT~la~~ia~~~ 88 (272)
T 1d2n_A 62 TPLVSVLLEGPPHSGKTALAAKIAEES 88 (272)
T ss_dssp CSEEEEEEECSTTSSHHHHHHHHHHHH
T ss_pred CCCeEEEEECCCCCcHHHHHHHHHHHh
Confidence 334578899999999999999999886
No 439
>3iev_A GTP-binding protein ERA; ERA, GTPase, KH domain, anti-SD, 16S rRNA, 30S ribosome ASSE GTP-binding, nucleotide-binding; HET: GNP; 1.90A {Aquifex aeolicus} PDB: 3r9w_A* 3r9x_A*
Probab=91.08 E-value=0.12 Score=53.33 Aligned_cols=26 Identities=19% Similarity=0.359 Sum_probs=22.7
Q ss_pred CcceEEEEECCCCCcHHHHHHHHHHh
Q 006117 64 HGIILVGVAGPSGAGKTVFTEKVLNF 89 (660)
Q Consensus 64 e~~~IIGI~GpSGSGKSTLak~L~~l 89 (660)
..+-.|+|+|.+|+|||||++.|.+.
T Consensus 8 ~~~g~v~ivG~~nvGKSTLin~l~g~ 33 (308)
T 3iev_A 8 MKVGYVAIVGKPNVGKSTLLNNLLGT 33 (308)
T ss_dssp CEEEEEEEECSTTSSHHHHHHHHHTS
T ss_pred CCCCEEEEECCCCCcHHHHHHHHhCC
Confidence 33458999999999999999999875
No 440
>2j1l_A RHO-related GTP-binding protein RHOD; GTPase, membrane, prenylation, hydrolase, nucleotide-binding, methylation, lipoprotein, endosome DYNA; HET: GDP; 2.5A {Homo sapiens}
Probab=91.08 E-value=0.11 Score=49.81 Aligned_cols=26 Identities=23% Similarity=0.204 Sum_probs=21.9
Q ss_pred CcceEEEEECCCCCcHHHHHHHHHHh
Q 006117 64 HGIILVGVAGPSGAGKTVFTEKVLNF 89 (660)
Q Consensus 64 e~~~IIGI~GpSGSGKSTLak~L~~l 89 (660)
.+.+-|+|+|.+|+|||||++.+.+.
T Consensus 32 ~~~~ki~vvG~~~vGKSsli~~l~~~ 57 (214)
T 2j1l_A 32 VRSVKVVLVGDGGCGKTSLLMVFADG 57 (214)
T ss_dssp CCEEEEEEEECTTSSHHHHHHHHHC-
T ss_pred cceEEEEEECcCCCCHHHHHHHHHcC
Confidence 34578999999999999999998753
No 441
>2cjw_A GTP-binding protein GEM; nucleotide-binding, small GTPase, conformational change, cysteine-modified, G-protein hydrolase; HET: GDP; 2.10A {Homo sapiens} PDB: 2cjw_B* 2ht6_A*
Probab=91.07 E-value=0.15 Score=48.22 Aligned_cols=24 Identities=21% Similarity=0.315 Sum_probs=21.4
Q ss_pred ceEEEEECCCCCcHHHHHHHHHHh
Q 006117 66 IILVGVAGPSGAGKTVFTEKVLNF 89 (660)
Q Consensus 66 ~~IIGI~GpSGSGKSTLak~L~~l 89 (660)
.+-|+|+|.+|+|||||++.+.+.
T Consensus 6 ~~kv~lvG~~~vGKSsL~~~~~~~ 29 (192)
T 2cjw_A 6 YYRVVLIGEQGVGKSTLANIFAGV 29 (192)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHHH
T ss_pred eEEEEEECCCCCCHHHHHHHHhcC
Confidence 467999999999999999999864
No 442
>2zts_A Putative uncharacterized protein PH0186; KAIC like protein, ATP-binding, nucleotide-binding, ATP- binding protein; HET: ADP; 2.07A {Pyrococcus horikoshii}
Probab=91.06 E-value=0.14 Score=49.50 Aligned_cols=26 Identities=27% Similarity=0.456 Sum_probs=22.5
Q ss_pred eccCCcceEEEEECCCCCcHHHHHHHHHH
Q 006117 60 AQKNHGIILVGVAGPSGAGKTVFTEKVLN 88 (660)
Q Consensus 60 i~~ge~~~IIGI~GpSGSGKSTLak~L~~ 88 (660)
+++|. ++.|.|++|+|||||+-.++.
T Consensus 27 l~~G~---l~~i~G~pG~GKT~l~l~~~~ 52 (251)
T 2zts_A 27 FPEGT---TVLLTGGTGTGKTTFAAQFIY 52 (251)
T ss_dssp EETTC---EEEEECCTTSSHHHHHHHHHH
T ss_pred CCCCe---EEEEEeCCCCCHHHHHHHHHH
Confidence 57788 999999999999999977653
No 443
>3cbq_A GTP-binding protein REM 2; FLJ38964A, structural genomics consortium, SGC, GDP, membrane, nucleotide-binding, nucleotide binding protein; HET: GDP; 1.82A {Homo sapiens}
Probab=91.05 E-value=0.11 Score=49.30 Aligned_cols=26 Identities=31% Similarity=0.473 Sum_probs=21.1
Q ss_pred CCcceEEEEECCCCCcHHHHHHHHHH
Q 006117 63 NHGIILVGVAGPSGAGKTVFTEKVLN 88 (660)
Q Consensus 63 ge~~~IIGI~GpSGSGKSTLak~L~~ 88 (660)
....+-|+|+|.+|+|||||++.+.+
T Consensus 20 ~~~~~ki~vvG~~~vGKSsLi~~l~~ 45 (195)
T 3cbq_A 20 KDGIFKVMLVGESGVGKSTLAGTFGG 45 (195)
T ss_dssp --CEEEEEEECSTTSSHHHHHHHTCC
T ss_pred CCcEEEEEEECCCCCCHHHHHHHHHh
Confidence 34457899999999999999998754
No 444
>2fv8_A H6, RHO-related GTP-binding protein RHOB; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8
Probab=91.00 E-value=0.13 Score=48.97 Aligned_cols=24 Identities=21% Similarity=0.080 Sum_probs=21.6
Q ss_pred ceEEEEECCCCCcHHHHHHHHHHh
Q 006117 66 IILVGVAGPSGAGKTVFTEKVLNF 89 (660)
Q Consensus 66 ~~IIGI~GpSGSGKSTLak~L~~l 89 (660)
.+-|+|+|.+|+|||||++.+.+.
T Consensus 25 ~~ki~vvG~~~~GKSsli~~l~~~ 48 (207)
T 2fv8_A 25 RKKLVVVGDGACGKTCLLIVFSKD 48 (207)
T ss_dssp EEEEEEEECTTSSHHHHHHHHHHS
T ss_pred CcEEEEECcCCCCHHHHHHHHhcC
Confidence 457999999999999999999875
No 445
>1e2k_A Thymidine kinase; transferase, antiviral drug, enzyme-prodrug gene therapy, sugar ring pucker; HET: TMC; 1.7A {Herpes simplex virus} SCOP: c.37.1.1 PDB: 1e2i_A* 1e2h_A* 1e2m_A* 1e2n_A* 1e2p_A* 1ki2_A* 1ki3_A* 1ki4_A* 1ki6_B* 1ki7_A* 1ki8_A* 3rdp_A* 2ki5_A* 1kim_A* 1qhi_A* 1p7c_A* 1vtk_A* 2vtk_A* 3vtk_A* 3f0t_A* ...
Probab=90.98 E-value=0.11 Score=54.91 Aligned_cols=31 Identities=26% Similarity=0.450 Sum_probs=23.0
Q ss_pred ceEEEEECCCCCcHHHHHHHHHHhCCCceEE
Q 006117 66 IILVGVAGPSGAGKTVFTEKVLNFMPSIAVI 96 (660)
Q Consensus 66 ~~IIGI~GpSGSGKSTLak~L~~lLp~~g~I 96 (660)
..+|.|-|+.||||||+++.|++.+...|.+
T Consensus 4 ~~fI~~EG~dGsGKTT~~~~La~~L~~~gv~ 34 (331)
T 1e2k_A 4 LLRVYIDGPHGMGKTTTTQLLVALGSRDDIV 34 (331)
T ss_dssp EEEEEECSCTTSSHHHHHHHHTC----CCEE
T ss_pred cEEEEEECCCCCCHHHHHHHHHHHhhhCCEE
Confidence 3589999999999999999999987433433
No 446
>1gwn_A RHO-related GTP-binding protein RHOE; GTPase, inactive GTPase, signal transduction; HET: GTP; 2.1A {Mus musculus} SCOP: c.37.1.8
Probab=90.97 E-value=0.13 Score=49.33 Aligned_cols=26 Identities=23% Similarity=0.137 Sum_probs=22.3
Q ss_pred CcceEEEEECCCCCcHHHHHHHHHHh
Q 006117 64 HGIILVGVAGPSGAGKTVFTEKVLNF 89 (660)
Q Consensus 64 e~~~IIGI~GpSGSGKSTLak~L~~l 89 (660)
...+-|+|+|.+|+|||||++.+.+.
T Consensus 26 ~~~~ki~vvG~~~vGKSsLi~~l~~~ 51 (205)
T 1gwn_A 26 NVKCKIVVVGDSQCGKTALLHVFAKD 51 (205)
T ss_dssp -CEEEEEEEESTTSSHHHHHHHHHHS
T ss_pred ceeeEEEEECCCCCCHHHHHHHHhcC
Confidence 34567999999999999999999875
No 447
>3a1s_A Iron(II) transport protein B; FEOB, iron transporter, small GTPase, G protein, GDI; HET: GDP; 1.50A {Thermotoga maritima} PDB: 3a1t_A* 3a1u_A* 3a1v_A* 3a1w_A
Probab=90.92 E-value=0.13 Score=51.93 Aligned_cols=24 Identities=25% Similarity=0.367 Sum_probs=21.6
Q ss_pred ceEEEEECCCCCcHHHHHHHHHHh
Q 006117 66 IILVGVAGPSGAGKTVFTEKVLNF 89 (660)
Q Consensus 66 ~~IIGI~GpSGSGKSTLak~L~~l 89 (660)
.+.|+|+|.+|+|||||++.|.+.
T Consensus 5 ~~kI~lvG~~nvGKTsL~n~l~g~ 28 (258)
T 3a1s_A 5 MVKVALAGCPNVGKTSLFNALTGT 28 (258)
T ss_dssp EEEEEEECCTTSSHHHHHHHHHTT
T ss_pred ceEEEEECCCCCCHHHHHHHHHCC
Confidence 467999999999999999999874
No 448
>2q3h_A RAS homolog gene family, member U; GTPase, structural genomics, structural genomics consortium,; HET: GDP; 1.73A {Homo sapiens}
Probab=90.89 E-value=0.13 Score=48.24 Aligned_cols=25 Identities=16% Similarity=0.102 Sum_probs=20.8
Q ss_pred cceEEEEECCCCCcHHHHHHHHHHh
Q 006117 65 GIILVGVAGPSGAGKTVFTEKVLNF 89 (660)
Q Consensus 65 ~~~IIGI~GpSGSGKSTLak~L~~l 89 (660)
..+-|+|+|..|+|||||++.+.+.
T Consensus 19 ~~~ki~~~G~~~~GKssl~~~l~~~ 43 (201)
T 2q3h_A 19 RGVKCVLVGDGAVGKTSLVVSYTTN 43 (201)
T ss_dssp -CEEEEEECSTTSSHHHHHHHHHC-
T ss_pred cceEEEEECCCCCCHHHHHHHHHhC
Confidence 3567999999999999999998754
No 449
>2fu5_C RAS-related protein RAB-8A; MSS4:RAB8 protein complex, GEF:GTPase nucleotide free complex; 2.00A {Mus musculus} SCOP: c.37.1.8 PDB: 3qbt_A* 3tnf_A*
Probab=90.89 E-value=0.096 Score=48.16 Aligned_cols=25 Identities=24% Similarity=0.204 Sum_probs=11.2
Q ss_pred cceEEEEECCCCCcHHHHHHHHHHh
Q 006117 65 GIILVGVAGPSGAGKTVFTEKVLNF 89 (660)
Q Consensus 65 ~~~IIGI~GpSGSGKSTLak~L~~l 89 (660)
..+-|+|+|.+|+|||||++.+.+.
T Consensus 7 ~~~ki~v~G~~~~GKssl~~~l~~~ 31 (183)
T 2fu5_C 7 YLFKLLLIGDSGVGKTCVLFRFSED 31 (183)
T ss_dssp EEEEEEEECCCCC------------
T ss_pred CceEEEEECCCCCCHHHHHHHHHhC
Confidence 3567999999999999999988753
No 450
>1p6x_A Thymidine kinase; P-loop, LID, transferase; HET: THM; 2.00A {Equid herpesvirus 4} SCOP: c.37.1.1 PDB: 1p72_A* 1p73_A* 1p75_A*
Probab=90.88 E-value=0.11 Score=54.94 Aligned_cols=26 Identities=19% Similarity=0.253 Sum_probs=23.8
Q ss_pred ceEEEEECCCCCcHHHHHHHHHHhCC
Q 006117 66 IILVGVAGPSGAGKTVFTEKVLNFMP 91 (660)
Q Consensus 66 ~~IIGI~GpSGSGKSTLak~L~~lLp 91 (660)
..+|.|-|+-||||||+++.|++.+.
T Consensus 7 ~~fI~~EG~dGaGKTT~~~~La~~L~ 32 (334)
T 1p6x_A 7 IVRIYLDGVYGIGKSTTGRVMASAAS 32 (334)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHSGGG
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHhc
Confidence 35999999999999999999999983
No 451
>1of1_A Thymidine kinase; transferase, antiviral drug, enzyme- prodrug gene, DNA synthesis, ATP-binding; HET: SCT; 1.95A {Herpes simplex virus} SCOP: c.37.1.1
Probab=90.87 E-value=0.14 Score=55.11 Aligned_cols=33 Identities=24% Similarity=0.393 Sum_probs=24.1
Q ss_pred cceEEEEECCCCCcHHHHHHHHHHhCCCceEEE
Q 006117 65 GIILVGVAGPSGAGKTVFTEKVLNFMPSIAVIT 97 (660)
Q Consensus 65 ~~~IIGI~GpSGSGKSTLak~L~~lLp~~g~I~ 97 (660)
+..+|.|-|+.||||||+++.|++.+...|.+.
T Consensus 48 ~~~fIt~EG~dGsGKTT~~~~Lae~L~~~gvv~ 80 (376)
T 1of1_A 48 TLLRVYIDGPHGMGKTTTTQLLVALGSRDDIVY 80 (376)
T ss_dssp EEEEEEECSSTTSSHHHHHHHHHC----CCEEE
T ss_pred CceEEEEECCCCCCHHHHHHHHHHHhhhCCEEE
Confidence 346899999999999999999999884334443
No 452
>3def_A T7I23.11 protein; chloroplast, TOC33, GTPase, hydrolase; HET: GDP; 1.96A {Arabidopsis thaliana} PDB: 3bb3_A* 3bb4_A* 2j3e_A*
Probab=90.82 E-value=0.13 Score=51.59 Aligned_cols=27 Identities=22% Similarity=0.313 Sum_probs=23.6
Q ss_pred CCcceEEEEECCCCCcHHHHHHHHHHh
Q 006117 63 NHGIILVGVAGPSGAGKTVFTEKVLNF 89 (660)
Q Consensus 63 ge~~~IIGI~GpSGSGKSTLak~L~~l 89 (660)
+.+.+.|+|+|.+|+|||||++.|.+.
T Consensus 33 ~~~~~~I~lvG~~g~GKSSLin~l~~~ 59 (262)
T 3def_A 33 DMNSMTVLVLGKGGVGKSSTVNSLIGE 59 (262)
T ss_dssp TCCEEEEEEEECTTSSHHHHHHHHHTS
T ss_pred cCCCcEEEEECCCCCCHHHHHHHHhCC
Confidence 345678999999999999999999875
No 453
>1bif_A 6-phosphofructo-2-kinase/ fructose-2,6-bisphospha; transferase (phospho), phosphatase, hydrolase (phosp glycolysis, bifunctional enzyme; HET: AGS; 2.00A {Rattus norvegicus} SCOP: c.37.1.7 c.60.1.4 PDB: 3bif_A* 2bif_A* 1k6m_A* 1c80_A* 1c7z_A* 1c81_A* 1tip_A* 1fbt_A
Probab=90.81 E-value=0.12 Score=56.52 Aligned_cols=26 Identities=23% Similarity=0.408 Sum_probs=23.3
Q ss_pred cceEEEEECCCCCcHHHHHHHHHHhC
Q 006117 65 GIILVGVAGPSGAGKTVFTEKVLNFM 90 (660)
Q Consensus 65 ~~~IIGI~GpSGSGKSTLak~L~~lL 90 (660)
.+.+|.++|.+||||||+++.|+..+
T Consensus 38 ~~~~IvlvGlpGsGKSTia~~La~~l 63 (469)
T 1bif_A 38 CPTLIVMVGLPARGKTYISKKLTRYL 63 (469)
T ss_dssp CCEEEEEECCTTSSHHHHHHHHHHHH
T ss_pred CcEEEEEECCCCCCHHHHHHHHHHHH
Confidence 45689999999999999999999875
No 454
>1ofh_A ATP-dependent HSL protease ATP-binding subunit HSLU; chaperone, hydrolase, ATP-binding; HET: ADP; 2.5A {Haemophilus influenzae} SCOP: c.37.1.20 PDB: 1ofi_A*
Probab=90.79 E-value=0.15 Score=51.18 Aligned_cols=24 Identities=25% Similarity=0.481 Sum_probs=21.8
Q ss_pred eEEEEECCCCCcHHHHHHHHHHhC
Q 006117 67 ILVGVAGPSGAGKTVFTEKVLNFM 90 (660)
Q Consensus 67 ~IIGI~GpSGSGKSTLak~L~~lL 90 (660)
.-+.|.||+|+||||+++.++..+
T Consensus 51 ~~vll~G~~GtGKT~la~~la~~l 74 (310)
T 1ofh_A 51 KNILMIGPTGVGKTEIARRLAKLA 74 (310)
T ss_dssp CCEEEECCTTSSHHHHHHHHHHHH
T ss_pred ceEEEECCCCCCHHHHHHHHHHHh
Confidence 367799999999999999999987
No 455
>3llu_A RAS-related GTP-binding protein C; structural genomics consortium, SGC, cytoplasm, nucleotide-binding, nucleus, phosphoprotein; HET: GNP; 1.40A {Homo sapiens} PDB: 2q3f_A*
Probab=90.76 E-value=0.11 Score=48.83 Aligned_cols=29 Identities=17% Similarity=0.139 Sum_probs=22.2
Q ss_pred cCCcceEEEEECCCCCcHHHHHHHHHHhC
Q 006117 62 KNHGIILVGVAGPSGAGKTVFTEKVLNFM 90 (660)
Q Consensus 62 ~ge~~~IIGI~GpSGSGKSTLak~L~~lL 90 (660)
.+++.+-|.|+|.+|+|||||++.+.+.+
T Consensus 16 ~~~~~~ki~~vG~~~vGKTsLi~~l~~~~ 44 (196)
T 3llu_A 16 FQGSKPRILLMGLRRSGKSSIQKVVFHKM 44 (196)
T ss_dssp ----CCEEEEEESTTSSHHHHHHHHHSCC
T ss_pred ccCcceEEEEECCCCCCHHHHHHHHHhcC
Confidence 44556789999999999999999887754
No 456
>1h65_A Chloroplast outer envelope protein OEP34; GTPase, translocon; HET: GDP; 2.0A {Pisum sativum} SCOP: c.37.1.8 PDB: 3bb1_A*
Probab=90.67 E-value=0.13 Score=51.65 Aligned_cols=28 Identities=18% Similarity=0.329 Sum_probs=23.9
Q ss_pred cCCcceEEEEECCCCCcHHHHHHHHHHh
Q 006117 62 KNHGIILVGVAGPSGAGKTVFTEKVLNF 89 (660)
Q Consensus 62 ~ge~~~IIGI~GpSGSGKSTLak~L~~l 89 (660)
.+...+.|+++|.+|+|||||++.|.+.
T Consensus 35 ~~~~~~~I~vvG~~g~GKSSLin~l~~~ 62 (270)
T 1h65_A 35 EDVNSLTILVMGKGGVGKSSTVNSIIGE 62 (270)
T ss_dssp TTCCEEEEEEEESTTSSHHHHHHHHHTS
T ss_pred cCCCCeEEEEECCCCCCHHHHHHHHhCC
Confidence 3445678999999999999999999875
No 457
>2hup_A RAS-related protein RAB-43; G-protein, GDP, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 2.05A {Homo sapiens}
Probab=90.65 E-value=0.15 Score=48.33 Aligned_cols=26 Identities=15% Similarity=0.193 Sum_probs=22.3
Q ss_pred CcceEEEEECCCCCcHHHHHHHHHHh
Q 006117 64 HGIILVGVAGPSGAGKTVFTEKVLNF 89 (660)
Q Consensus 64 e~~~IIGI~GpSGSGKSTLak~L~~l 89 (660)
+..+-|+|+|..|+|||||++.+.+.
T Consensus 27 ~~~~ki~vvG~~~vGKSsli~~l~~~ 52 (201)
T 2hup_A 27 DFLFKLVLVGDASVGKTCVVQRFKTG 52 (201)
T ss_dssp CEEEEEEEEECTTSSHHHHHHHHHHS
T ss_pred ccceEEEEECcCCCCHHHHHHHHhhC
Confidence 33567999999999999999999765
No 458
>2atx_A Small GTP binding protein TC10; GTPase, P-loop, alpha-beta, hydrolase; HET: GNP; 2.65A {Homo sapiens} SCOP: c.37.1.8
Probab=90.65 E-value=0.14 Score=47.63 Aligned_cols=25 Identities=24% Similarity=0.189 Sum_probs=22.1
Q ss_pred cceEEEEECCCCCcHHHHHHHHHHh
Q 006117 65 GIILVGVAGPSGAGKTVFTEKVLNF 89 (660)
Q Consensus 65 ~~~IIGI~GpSGSGKSTLak~L~~l 89 (660)
..+-|+|+|.+|+|||||++.+.+.
T Consensus 17 ~~~ki~v~G~~~~GKssli~~l~~~ 41 (194)
T 2atx_A 17 LMLKCVVVGDGAVGKTCLLMSYAND 41 (194)
T ss_dssp EEEEEEEEECTTSSHHHHHHHHHHS
T ss_pred ceEEEEEECCCCCCHHHHHHHHhcC
Confidence 3467999999999999999999875
No 459
>3iby_A Ferrous iron transport protein B; G protein, G domain, iron uptake, cell inner membrane, cell GTP-binding, ION transport, membrane; 2.50A {Legionella pneumophila}
Probab=90.62 E-value=0.11 Score=52.24 Aligned_cols=23 Identities=22% Similarity=0.231 Sum_probs=20.8
Q ss_pred eEEEEECCCCCcHHHHHHHHHHh
Q 006117 67 ILVGVAGPSGAGKTVFTEKVLNF 89 (660)
Q Consensus 67 ~IIGI~GpSGSGKSTLak~L~~l 89 (660)
..|+|+|.+|||||||++.|.+.
T Consensus 2 ~kI~lvG~~n~GKSTL~n~L~g~ 24 (256)
T 3iby_A 2 THALLIGNPNCGKTTLFNALTNA 24 (256)
T ss_dssp CEEEEEESTTSSHHHHHHHHHTT
T ss_pred CEEEEECCCCCCHHHHHHHHHCC
Confidence 36899999999999999999875
No 460
>2b6h_A ADP-ribosylation factor 5; membrane trafficking, GDP, structural genomics, structural G consortium, SGC, protein transport; HET: GDP; 1.76A {Homo sapiens} SCOP: c.37.1.8 PDB: 1z6x_A* 3aq4_A*
Probab=90.58 E-value=0.15 Score=48.05 Aligned_cols=25 Identities=24% Similarity=0.205 Sum_probs=21.6
Q ss_pred CcceEEEEECCCCCcHHHHHHHHHH
Q 006117 64 HGIILVGVAGPSGAGKTVFTEKVLN 88 (660)
Q Consensus 64 e~~~IIGI~GpSGSGKSTLak~L~~ 88 (660)
.+.+-|+|+|++|+|||||++.+.+
T Consensus 27 ~~~~ki~v~G~~~vGKSsLi~~l~~ 51 (192)
T 2b6h_A 27 KKQMRILMVGLDAAGKTTILYKLKL 51 (192)
T ss_dssp TSCEEEEEEESTTSSHHHHHHHHCS
T ss_pred CCccEEEEECCCCCCHHHHHHHHHh
Confidence 4457899999999999999998864
No 461
>3pfi_A Holliday junction ATP-dependent DNA helicase RUVB; probable holliday junction DNA helicase; HET: ADP; 2.69A {Campylobacter jejuni subsp}
Probab=90.57 E-value=0.19 Score=51.59 Aligned_cols=26 Identities=27% Similarity=0.378 Sum_probs=23.0
Q ss_pred cceEEEEECCCCCcHHHHHHHHHHhC
Q 006117 65 GIILVGVAGPSGAGKTVFTEKVLNFM 90 (660)
Q Consensus 65 ~~~IIGI~GpSGSGKSTLak~L~~lL 90 (660)
.+..+.|.||+|+||||+++.++..+
T Consensus 54 ~~~~vll~G~~GtGKT~la~~ia~~~ 79 (338)
T 3pfi_A 54 CLDHILFSGPAGLGKTTLANIISYEM 79 (338)
T ss_dssp CCCCEEEECSTTSSHHHHHHHHHHHT
T ss_pred CCCeEEEECcCCCCHHHHHHHHHHHh
Confidence 34468899999999999999999987
No 462
>2h57_A ADP-ribosylation factor-like protein 6; GTP, GTPase, membrane trafficking, structural genomics consortium, SGC, transport protein; HET: GTP; 2.00A {Homo sapiens}
Probab=90.52 E-value=0.12 Score=48.13 Aligned_cols=25 Identities=24% Similarity=0.193 Sum_probs=21.0
Q ss_pred cceEEEEECCCCCcHHHHHHHHHHh
Q 006117 65 GIILVGVAGPSGAGKTVFTEKVLNF 89 (660)
Q Consensus 65 ~~~IIGI~GpSGSGKSTLak~L~~l 89 (660)
+.+-|+|+|..|+|||||++.+.+.
T Consensus 20 ~~~ki~v~G~~~~GKSsli~~l~~~ 44 (190)
T 2h57_A 20 KEVHVLCLGLDNSGKTTIINKLKPS 44 (190)
T ss_dssp -CEEEEEEECTTSSHHHHHHHTSCG
T ss_pred CccEEEEECCCCCCHHHHHHHHhcC
Confidence 3567999999999999999988654
No 463
>2r62_A Cell division protease FTSH homolog; ATPase domain, ATP-binding, cell CELL division, hydrolase, membrane, metal-binding; 3.30A {Helicobacter pylori} PDB: 2r65_A*
Probab=90.49 E-value=0.074 Score=52.83 Aligned_cols=23 Identities=35% Similarity=0.491 Sum_probs=20.7
Q ss_pred EEEEECCCCCcHHHHHHHHHHhC
Q 006117 68 LVGVAGPSGAGKTVFTEKVLNFM 90 (660)
Q Consensus 68 IIGI~GpSGSGKSTLak~L~~lL 90 (660)
-+.|.||+|+||||+++.|+..+
T Consensus 46 ~vll~G~~GtGKT~la~~la~~~ 68 (268)
T 2r62_A 46 GVLLVGPPGTGKTLLAKAVAGEA 68 (268)
T ss_dssp CCCCBCSSCSSHHHHHHHHHHHH
T ss_pred eEEEECCCCCcHHHHHHHHHHHh
Confidence 36789999999999999999876
No 464
>2dby_A GTP-binding protein; GDP, structural genomics, NPPSFA, natio project on protein structural and functional analyses; HET: GDP; 1.76A {Thermus thermophilus} PDB: 2dwq_A
Probab=90.40 E-value=0.12 Score=55.46 Aligned_cols=23 Identities=22% Similarity=0.437 Sum_probs=20.9
Q ss_pred eEEEEECCCCCcHHHHHHHHHHh
Q 006117 67 ILVGVAGPSGAGKTVFTEKVLNF 89 (660)
Q Consensus 67 ~IIGI~GpSGSGKSTLak~L~~l 89 (660)
+.|||+|.+|+|||||++.|.+.
T Consensus 2 ~~v~IVG~pnvGKSTL~n~L~~~ 24 (368)
T 2dby_A 2 LAVGIVGLPNVGKSTLFNALTRA 24 (368)
T ss_dssp CSEEEECCSSSSHHHHHHHHHHH
T ss_pred cEEEEECCCCCCHHHHHHHHhCC
Confidence 35899999999999999999876
No 465
>1u94_A RECA protein, recombinase A; homologous recombination, ATPase, DNA repair, DNA binding protein; 1.90A {Escherichia coli} SCOP: c.37.1.11 d.48.1.1 PDB: 1u98_A 1u99_A 1xms_A* 1xmv_A* 2rec_A 2reb_A 1n03_A* 1rea_A 1aa3_A
Probab=90.38 E-value=0.2 Score=53.27 Aligned_cols=38 Identities=24% Similarity=0.362 Sum_probs=28.5
Q ss_pred eccCCcceEEEEECCCCCcHHHHHHHHHHhC--CCceEEEecC
Q 006117 60 AQKNHGIILVGVAGPSGAGKTVFTEKVLNFM--PSIAVITMDN 100 (660)
Q Consensus 60 i~~ge~~~IIGI~GpSGSGKSTLak~L~~lL--p~~g~I~lDg 100 (660)
+++|. ++.|.|++|+|||||+..++... .+...+.++.
T Consensus 60 l~~G~---ii~I~G~pGsGKTtLal~la~~~~~~g~~vlyid~ 99 (356)
T 1u94_A 60 LPMGR---IVEIYGPESSGKTTLTLQVIAAAQREGKTCAFIDA 99 (356)
T ss_dssp EETTS---EEEEECSTTSSHHHHHHHHHHHHHHTTCCEEEEES
T ss_pred ccCCe---EEEEECCCCCCHHHHHHHHHHHHHHCCCeEEEEeC
Confidence 56777 99999999999999998888764 2333444443
No 466
>4gzl_A RAS-related C3 botulinum toxin substrate 1; rossmann fold, GTP binding, membrane, hydrolase; HET: GNP; 2.00A {Homo sapiens} PDB: 3th5_A* 4gzm_A*
Probab=90.38 E-value=0.16 Score=48.32 Aligned_cols=26 Identities=23% Similarity=0.146 Sum_probs=21.7
Q ss_pred CcceEEEEECCCCCcHHHHHHHHHHh
Q 006117 64 HGIILVGVAGPSGAGKTVFTEKVLNF 89 (660)
Q Consensus 64 e~~~IIGI~GpSGSGKSTLak~L~~l 89 (660)
.+.+-|+|+|.+|+|||||++.+...
T Consensus 28 ~~~~ki~vvG~~~~GKSsLi~~l~~~ 53 (204)
T 4gzl_A 28 GQAIKCVVVGDGAVGKTCLLISYTTN 53 (204)
T ss_dssp --CEEEEEEESTTSSHHHHHHHHHHS
T ss_pred CCeEEEEEECcCCCCHHHHHHHHHhC
Confidence 34578999999999999999998865
No 467
>2gco_A H9, RHO-related GTP-binding protein RHOC; GTPase,signaling protein, signaling Pro; HET: GNP; 1.40A {Homo sapiens} PDB: 2gcn_A* 2gcp_A* 1z2c_A* 1x86_B 2rgn_C* 1lb1_B 1s1c_A* 3kz1_E* 3lxr_A* 3lwn_A* 3lw8_A* 1cxz_A* 1a2b_A* 1ow3_B* 1ftn_A* 1cc0_A* 3msx_A* 1xcg_B 3t06_B 1tx4_B* ...
Probab=90.38 E-value=0.15 Score=48.14 Aligned_cols=24 Identities=17% Similarity=0.076 Sum_probs=21.4
Q ss_pred ceEEEEECCCCCcHHHHHHHHHHh
Q 006117 66 IILVGVAGPSGAGKTVFTEKVLNF 89 (660)
Q Consensus 66 ~~IIGI~GpSGSGKSTLak~L~~l 89 (660)
.+-|+|+|.+|+|||||++.+.+.
T Consensus 25 ~~ki~vvG~~~~GKSsli~~l~~~ 48 (201)
T 2gco_A 25 RKKLVIVGDGACGKTCLLIVFSKD 48 (201)
T ss_dssp EEEEEEEESTTSSHHHHHHHHHHS
T ss_pred ceEEEEECCCCCCHHHHHHHHHhC
Confidence 457999999999999999999875
No 468
>2v1u_A Cell division control protein 6 homolog; DNA replication, nucleotide-binding, replication, archaea; HET: ADP; 3.10A {Aeropyrum pernix}
Probab=90.32 E-value=0.13 Score=53.07 Aligned_cols=25 Identities=28% Similarity=0.263 Sum_probs=22.4
Q ss_pred ceEEEEECCCCCcHHHHHHHHHHhC
Q 006117 66 IILVGVAGPSGAGKTVFTEKVLNFM 90 (660)
Q Consensus 66 ~~IIGI~GpSGSGKSTLak~L~~lL 90 (660)
+..+.|.||+|+||||+++.++..+
T Consensus 44 ~~~vll~G~~G~GKT~l~~~~~~~~ 68 (387)
T 2v1u_A 44 PSNALLYGLTGTGKTAVARLVLRRL 68 (387)
T ss_dssp CCCEEECBCTTSSHHHHHHHHHHHH
T ss_pred CCcEEEECCCCCCHHHHHHHHHHHH
Confidence 4478999999999999999999876
No 469
>1jwy_B Dynamin A GTPase domain; dynamin, GTPase, GDP, myosin, fusion-protein, hydrolase; HET: BGC ADP GDP; 2.30A {Dictyostelium discoideum} SCOP: c.37.1.8 PDB: 1jx2_B*
Probab=90.30 E-value=0.13 Score=52.28 Aligned_cols=23 Identities=22% Similarity=0.341 Sum_probs=21.4
Q ss_pred eEEEEECCCCCcHHHHHHHHHHh
Q 006117 67 ILVGVAGPSGAGKTVFTEKVLNF 89 (660)
Q Consensus 67 ~IIGI~GpSGSGKSTLak~L~~l 89 (660)
..|+|+|..|||||||++.|.+.
T Consensus 25 ~~I~vvG~~~~GKSTlln~l~g~ 47 (315)
T 1jwy_B 25 PQIVVVGSQSSGKSSVLENIVGR 47 (315)
T ss_dssp CEEEEEECSSSSHHHHHHHHHTS
T ss_pred CeEEEEcCCCCCHHHHHHHHHCC
Confidence 47999999999999999999886
No 470
>3d8b_A Fidgetin-like protein 1; AAA+, ATPase, ADP, SGC, structural genomics consortium, ATP- hydrolase, magnesium, metal-binding, nucleotide-binding; HET: ADP; 2.00A {Homo sapiens}
Probab=90.30 E-value=0.24 Score=52.12 Aligned_cols=34 Identities=18% Similarity=0.260 Sum_probs=26.4
Q ss_pred cceEEEEECCCCCcHHHHHHHHHHhCCCceEEEec
Q 006117 65 GIILVGVAGPSGAGKTVFTEKVLNFMPSIAVITMD 99 (660)
Q Consensus 65 ~~~IIGI~GpSGSGKSTLak~L~~lLp~~g~I~lD 99 (660)
.+.-|.|.||+|+||||+++.|+..+ +...+.++
T Consensus 116 ~~~~vLl~GppGtGKT~la~aia~~~-~~~~~~i~ 149 (357)
T 3d8b_A 116 PPKGILLFGPPGTGKTLIGKCIASQS-GATFFSIS 149 (357)
T ss_dssp CCSEEEEESSTTSSHHHHHHHHHHHT-TCEEEEEE
T ss_pred CCceEEEECCCCCCHHHHHHHHHHHc-CCeEEEEe
Confidence 34578999999999999999999987 33344443
No 471
>1jal_A YCHF protein; nucleotide-binding fold, structural genomics, structure 2 function project, S2F, unknown function; 2.40A {Haemophilus influenzae} SCOP: c.37.1.8 d.15.10.2
Probab=90.23 E-value=0.22 Score=53.31 Aligned_cols=23 Identities=17% Similarity=0.356 Sum_probs=21.0
Q ss_pred eEEEEECCCCCcHHHHHHHHHHh
Q 006117 67 ILVGVAGPSGAGKTVFTEKVLNF 89 (660)
Q Consensus 67 ~IIGI~GpSGSGKSTLak~L~~l 89 (660)
..|||+|.+|+|||||++.|.+.
T Consensus 3 ~kI~IVG~pnvGKSTL~n~Lt~~ 25 (363)
T 1jal_A 3 FKCGIVGLPNVGKSTLFNALTKA 25 (363)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHT
T ss_pred CEEEEECCCCCCHHHHHHHHHCC
Confidence 36999999999999999999984
No 472
>1wf3_A GTP-binding protein; GTPase, riken structural genomics/prote initiative, RSGI, structural genomics, hydrolase; HET: GNP; 1.88A {Thermus thermophilus} SCOP: c.37.1.8 d.52.3.1
Probab=90.23 E-value=0.15 Score=52.68 Aligned_cols=23 Identities=22% Similarity=0.458 Sum_probs=21.0
Q ss_pred eEEEEECCCCCcHHHHHHHHHHh
Q 006117 67 ILVGVAGPSGAGKTVFTEKVLNF 89 (660)
Q Consensus 67 ~IIGI~GpSGSGKSTLak~L~~l 89 (660)
..|+|+|.+|+|||||++.|.+.
T Consensus 8 g~V~ivG~~nvGKSTLln~l~g~ 30 (301)
T 1wf3_A 8 GFVAIVGKPNVGKSTLLNNLLGV 30 (301)
T ss_dssp EEEEEECSTTSSHHHHHHHHHTS
T ss_pred CEEEEECCCCCCHHHHHHHHhCC
Confidence 47999999999999999999875
No 473
>1um8_A ATP-dependent CLP protease ATP-binding subunit CL; CLPP binding loop, chaperone; HET: ADP; 2.60A {Helicobacter pylori} SCOP: c.37.1.20
Probab=90.06 E-value=0.22 Score=52.34 Aligned_cols=23 Identities=26% Similarity=0.613 Sum_probs=21.6
Q ss_pred EEEEECCCCCcHHHHHHHHHHhC
Q 006117 68 LVGVAGPSGAGKTVFTEKVLNFM 90 (660)
Q Consensus 68 IIGI~GpSGSGKSTLak~L~~lL 90 (660)
.+.|.||+|+||||+++.|+..+
T Consensus 74 ~ill~Gp~GtGKT~la~~la~~l 96 (376)
T 1um8_A 74 NILLIGPTGSGKTLMAQTLAKHL 96 (376)
T ss_dssp CEEEECCTTSSHHHHHHHHHHHT
T ss_pred CEEEECCCCCCHHHHHHHHHHHh
Confidence 57899999999999999999988
No 474
>2qag_A Septin-2, protein NEDD5; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens}
Probab=89.98 E-value=0.1 Score=55.30 Aligned_cols=23 Identities=26% Similarity=0.400 Sum_probs=20.2
Q ss_pred eEEEEECCCCCcHHHHHHHHHHh
Q 006117 67 ILVGVAGPSGAGKTVFTEKVLNF 89 (660)
Q Consensus 67 ~IIGI~GpSGSGKSTLak~L~~l 89 (660)
+-|+|+|++|+|||||++.|.+.
T Consensus 38 ~~I~vvG~~g~GKSTLln~L~~~ 60 (361)
T 2qag_A 38 FTLMVVGESGLGKSTLINSLFLT 60 (361)
T ss_dssp ECEEECCCTTSCHHHHHHHHTTC
T ss_pred EEEEEEcCCCCCHHHHHHHHhCC
Confidence 45799999999999999998665
No 475
>2dy1_A Elongation factor G; translocation, GTP complex, structural genomics, NPPSFA; HET: GTP; 1.60A {Thermus thermophilus} SCOP: b.43.3.1 c.37.1.8 d.14.1.1 d.58.11.1 d.58.11.1 PDB: 1wdt_A*
Probab=89.88 E-value=0.14 Score=58.84 Aligned_cols=24 Identities=38% Similarity=0.513 Sum_probs=22.0
Q ss_pred eEEEEECCCCCcHHHHHHHHHHhC
Q 006117 67 ILVGVAGPSGAGKTVFTEKVLNFM 90 (660)
Q Consensus 67 ~IIGI~GpSGSGKSTLak~L~~lL 90 (660)
..|+|+|++|+|||||++.|.+..
T Consensus 10 ~~i~IiG~~gaGKTTLl~~L~~~~ 33 (665)
T 2dy1_A 10 RTVALVGHAGSGKTTLTEALLYKT 33 (665)
T ss_dssp EEEEEEESTTSSHHHHHHHHHHHT
T ss_pred cEEEEECCCCChHHHHHHHHHHhc
Confidence 389999999999999999999765
No 476
>3t5d_A Septin-7; GTP-binding protein, cytoskeleton, signaling protein; HET: GDP; 3.30A {Homo sapiens} PDB: 3tw4_A*
Probab=89.85 E-value=0.16 Score=51.15 Aligned_cols=24 Identities=25% Similarity=0.346 Sum_probs=20.7
Q ss_pred ceEEEEECCCCCcHHHHHHHHHHh
Q 006117 66 IILVGVAGPSGAGKTVFTEKVLNF 89 (660)
Q Consensus 66 ~~IIGI~GpSGSGKSTLak~L~~l 89 (660)
.+-|+|+|.+|+|||||++.|.+.
T Consensus 8 ~~~I~vvG~~g~GKSTLin~L~~~ 31 (274)
T 3t5d_A 8 EFTLMVVGESGLGKSTLINSLFLT 31 (274)
T ss_dssp EEEEEEEECTTSSHHHHHHHHSSS
T ss_pred EEEEEEECCCCCCHHHHHHHHhCC
Confidence 467999999999999999987654
No 477
>2qby_B CDC6 homolog 3, cell division control protein 6 homolog 3; winged-helix domain, helix-turn-helix, AAA+ ATPase domain, protein-DNA complex; HET: DNA SPD ADP; 3.35A {Sulfolobus solfataricus}
Probab=89.81 E-value=0.18 Score=52.26 Aligned_cols=27 Identities=22% Similarity=0.246 Sum_probs=23.4
Q ss_pred CcceEEEEECCCCCcHHHHHHHHHHhC
Q 006117 64 HGIILVGVAGPSGAGKTVFTEKVLNFM 90 (660)
Q Consensus 64 e~~~IIGI~GpSGSGKSTLak~L~~lL 90 (660)
..+..+.|.||+|+||||+++.++..+
T Consensus 43 ~~~~~vll~G~~G~GKT~la~~l~~~~ 69 (384)
T 2qby_B 43 EVKFSNLFLGLTGTGKTFVSKYIFNEI 69 (384)
T ss_dssp CCCCEEEEEECTTSSHHHHHHHHHHHH
T ss_pred CCCCcEEEECCCCCCHHHHHHHHHHHH
Confidence 334589999999999999999999875
No 478
>1g41_A Heat shock protein HSLU; AAA-ATPase, CLPY, ATP-dependent proteolysis, chaperone; HET: ADP; 2.30A {Haemophilus influenzae} SCOP: c.37.1.20 PDB: 1g3i_A* 1im2_A* 1kyi_A* 1g4a_E* 1g4b_E 1yyf_A* 1do0_A* 1do2_A* 1e94_E* 1hqy_E* 1ht1_E* 1ht2_E*
Probab=89.75 E-value=0.23 Score=54.55 Aligned_cols=32 Identities=22% Similarity=0.473 Sum_probs=26.1
Q ss_pred EEEEECCCCCcHHHHHHHHHHhCCCceEEEecC
Q 006117 68 LVGVAGPSGAGKTVFTEKVLNFMPSIAVITMDN 100 (660)
Q Consensus 68 IIGI~GpSGSGKSTLak~L~~lLp~~g~I~lDg 100 (660)
-|.+.||+|+||||+++.|+..+ +...+.++.
T Consensus 52 ~iLl~GppGtGKT~lar~lA~~l-~~~~~~v~~ 83 (444)
T 1g41_A 52 NILMIGPTGVGKTEIARRLAKLA-NAPFIKVEA 83 (444)
T ss_dssp CEEEECCTTSSHHHHHHHHHHHT-TCCEEEEEG
T ss_pred eEEEEcCCCCCHHHHHHHHHHHc-CCCceeecc
Confidence 57899999999999999999998 344555554
No 479
>3eie_A Vacuolar protein sorting-associated protein 4; AAA ATPase, ATP-binding cassette, ATP-binding, endosome, MEM nucleotide-binding; 2.70A {Saccharomyces cerevisiae} PDB: 3eih_A* 2rko_A 3mhv_C
Probab=89.73 E-value=0.23 Score=51.31 Aligned_cols=33 Identities=18% Similarity=0.298 Sum_probs=25.6
Q ss_pred ceEEEEECCCCCcHHHHHHHHHHhCCCceEEEec
Q 006117 66 IILVGVAGPSGAGKTVFTEKVLNFMPSIAVITMD 99 (660)
Q Consensus 66 ~~IIGI~GpSGSGKSTLak~L~~lLp~~g~I~lD 99 (660)
+.-+.|.||+|+|||++++.++..+ +...+.++
T Consensus 51 ~~~vLl~GppGtGKT~la~aia~~~-~~~~~~v~ 83 (322)
T 3eie_A 51 TSGILLYGPPGTGKSYLAKAVATEA-NSTFFSVS 83 (322)
T ss_dssp CCEEEEECSSSSCHHHHHHHHHHHH-TCEEEEEE
T ss_pred CCeEEEECCCCCcHHHHHHHHHHHH-CCCEEEEc
Confidence 3478899999999999999999986 23344443
No 480
>2i1q_A DNA repair and recombination protein RADA; ATPase, recombinase, ATP complex, calcium stimulation, RECA, DMC1; HET: DNA ANP; 1.90A {Methanococcus voltae} SCOP: a.60.4.1 c.37.1.11 PDB: 1xu4_A* 2b21_A* 2fpk_A* 2fpl_A* 2fpm_A* 1t4g_A* 3fyh_A* 2f1j_A* 2f1i_A* 2f1h_A* 3ntu_A* 3ewa_A* 3ew9_A* 3etl_A* 4dc9_A* 2gdj_A*
Probab=89.66 E-value=0.17 Score=52.19 Aligned_cols=27 Identities=22% Similarity=0.244 Sum_probs=23.7
Q ss_pred eccCCcceEEEEECCCCCcHHHHHHHHHHh
Q 006117 60 AQKNHGIILVGVAGPSGAGKTVFTEKVLNF 89 (660)
Q Consensus 60 i~~ge~~~IIGI~GpSGSGKSTLak~L~~l 89 (660)
++.|. ++.|.|++|+|||||+..++..
T Consensus 95 l~~g~---i~~i~G~~gsGKT~la~~la~~ 121 (322)
T 2i1q_A 95 LESQS---VTEFAGVFGSGKTQIMHQSCVN 121 (322)
T ss_dssp EETTE---EEEEEESTTSSHHHHHHHHHHH
T ss_pred ccCCe---EEEEECCCCCCHHHHHHHHHHH
Confidence 46666 9999999999999999988865
No 481
>2z4s_A Chromosomal replication initiator protein DNAA; AAA+ ATPase, domain III (ATPase domain), ATP-binding, cytoplasm, DNA replication; HET: ADP; 3.00A {Thermotoga maritima} PDB: 2z4r_A*
Probab=89.64 E-value=0.17 Score=55.07 Aligned_cols=25 Identities=24% Similarity=0.309 Sum_probs=22.3
Q ss_pred ceEEEEECCCCCcHHHHHHHHHHhC
Q 006117 66 IILVGVAGPSGAGKTVFTEKVLNFM 90 (660)
Q Consensus 66 ~~IIGI~GpSGSGKSTLak~L~~lL 90 (660)
...+.|.||+|+|||||+++|+..+
T Consensus 130 ~~~lll~Gp~G~GKTtLa~aia~~l 154 (440)
T 2z4s_A 130 YNPLFIYGGVGLGKTHLLQSIGNYV 154 (440)
T ss_dssp SCCEEEECSSSSSHHHHHHHHHHHH
T ss_pred CCeEEEECCCCCCHHHHHHHHHHHH
Confidence 4478899999999999999999875
No 482
>2zan_A Vacuolar protein sorting-associating protein 4B; SKD1, VPS4B, AAA ATPase, ATP-binding, coiled coil, membrane, nucleotide-binding, phosphorylation; HET: ATP; 3.00A {Mus musculus} PDB: 2zam_A* 2zao_A* 2jqh_A 2jqk_A 1wr0_A 2jq9_A 2k3w_A 1yxr_A
Probab=89.61 E-value=0.31 Score=53.04 Aligned_cols=34 Identities=18% Similarity=0.298 Sum_probs=27.0
Q ss_pred eEEEEECCCCCcHHHHHHHHHHhCCCceEEEecC
Q 006117 67 ILVGVAGPSGAGKTVFTEKVLNFMPSIAVITMDN 100 (660)
Q Consensus 67 ~IIGI~GpSGSGKSTLak~L~~lLp~~g~I~lDg 100 (660)
.-|.|.||+|+|||++++.++..+.....+.++.
T Consensus 168 ~~vLL~GppGtGKT~lA~aia~~~~~~~~~~v~~ 201 (444)
T 2zan_A 168 RGILLFGPPGTGKSYLAKAVATEANNSTFFSISS 201 (444)
T ss_dssp SEEEEECSTTSSHHHHHHHHHHHCCSSEEEEECC
T ss_pred ceEEEECCCCCCHHHHHHHHHHHcCCCCEEEEeH
Confidence 4788999999999999999999874344555543
No 483
>2x77_A ADP-ribosylation factor; GTP-binding protein, small GTPase, nucleotide-binding; HET: GDP; 2.10A {Leishmania major}
Probab=89.53 E-value=0.14 Score=47.53 Aligned_cols=24 Identities=29% Similarity=0.238 Sum_probs=20.8
Q ss_pred CcceEEEEECCCCCcHHHHHHHHH
Q 006117 64 HGIILVGVAGPSGAGKTVFTEKVL 87 (660)
Q Consensus 64 e~~~IIGI~GpSGSGKSTLak~L~ 87 (660)
.+.+-|+|+|.+|+|||||++.+.
T Consensus 20 ~~~~~i~v~G~~~~GKssli~~l~ 43 (189)
T 2x77_A 20 DRKIRVLMLGLDNAGKTSILYRLH 43 (189)
T ss_dssp TSCEEEEEEEETTSSHHHHHHHTC
T ss_pred CCceEEEEECCCCCCHHHHHHHHH
Confidence 346789999999999999999874
No 484
>2yc2_C IFT27, small RAB-related GTPase; transport protein, cilium, IFT complex; 2.59A {Chlamydomonas reinhardtii} PDB: 2yc4_C
Probab=89.50 E-value=0.089 Score=49.22 Aligned_cols=24 Identities=21% Similarity=0.224 Sum_probs=5.7
Q ss_pred ceEEEEECCCCCcHHHHHHHHHHh
Q 006117 66 IILVGVAGPSGAGKTVFTEKVLNF 89 (660)
Q Consensus 66 ~~IIGI~GpSGSGKSTLak~L~~l 89 (660)
.+-|+|+|.+|+|||||++.+.+.
T Consensus 20 ~~~i~v~G~~~~GKssli~~l~~~ 43 (208)
T 2yc2_C 20 RCKVAVVGEATVGKSALISMFTSK 43 (208)
T ss_dssp EEEEEEC-----------------
T ss_pred ceEEEEECCCCCCHHHHHHHHHhC
Confidence 457999999999999999988765
No 485
>3cpj_B GTP-binding protein YPT31/YPT8; RAB GTPase, prenylation, vesicular transport, acetylation, golgi apparatus, lipoprotein, membrane; HET: GDP; 2.35A {Saccharomyces cerevisiae}
Probab=89.49 E-value=0.23 Score=47.85 Aligned_cols=25 Identities=20% Similarity=0.296 Sum_probs=22.1
Q ss_pred cceEEEEECCCCCcHHHHHHHHHHh
Q 006117 65 GIILVGVAGPSGAGKTVFTEKVLNF 89 (660)
Q Consensus 65 ~~~IIGI~GpSGSGKSTLak~L~~l 89 (660)
..+-|+|+|.+|+|||||++.|.+.
T Consensus 12 ~~~ki~v~G~~~vGKSsli~~l~~~ 36 (223)
T 3cpj_B 12 LLFKIVLIGDSGVGKSNLLSRFTKN 36 (223)
T ss_dssp EEEEEEEESCTTSSHHHHHHHHHHC
T ss_pred eeeEEEEECcCCCCHHHHHHHHhcC
Confidence 3467999999999999999999875
No 486
>2ce7_A Cell division protein FTSH; metalloprotease; HET: ADP; 2.44A {Thermotoga maritima} SCOP: a.269.1.1 c.37.1.20 PDB: 2cea_A* 3kds_E*
Probab=89.47 E-value=0.18 Score=55.85 Aligned_cols=23 Identities=30% Similarity=0.475 Sum_probs=21.2
Q ss_pred EEEEECCCCCcHHHHHHHHHHhC
Q 006117 68 LVGVAGPSGAGKTVFTEKVLNFM 90 (660)
Q Consensus 68 IIGI~GpSGSGKSTLak~L~~lL 90 (660)
-|.|.||+|+||||++++|++..
T Consensus 51 gvLL~GppGtGKT~Laraia~~~ 73 (476)
T 2ce7_A 51 GILLVGPPGTGKTLLARAVAGEA 73 (476)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHH
T ss_pred eEEEECCCCCCHHHHHHHHHHHc
Confidence 37799999999999999999986
No 487
>2j0v_A RAC-like GTP-binding protein ARAC7; nucleotide-binding protein, ROP9, atrac7, membrane, palmitate, RHO GTPase; HET: GDP; 1.78A {Arabidopsis thaliana}
Probab=89.45 E-value=0.21 Score=47.31 Aligned_cols=24 Identities=21% Similarity=0.129 Sum_probs=21.4
Q ss_pred ceEEEEECCCCCcHHHHHHHHHHh
Q 006117 66 IILVGVAGPSGAGKTVFTEKVLNF 89 (660)
Q Consensus 66 ~~IIGI~GpSGSGKSTLak~L~~l 89 (660)
.+-|+|+|.+|+|||||++.+.+.
T Consensus 9 ~~ki~i~G~~~~GKTsli~~l~~~ 32 (212)
T 2j0v_A 9 FIKCVTVGDGAVGKTCMLICYTSN 32 (212)
T ss_dssp EEEEEEEESTTSSHHHHHHHHHHS
T ss_pred eEEEEEECCCCCCHHHHHHHHhcC
Confidence 467999999999999999998864
No 488
>2bjv_A PSP operon transcriptional activator; AAA, transcription activation, gene regulation, sigma54 activator, enhancer binding protein, PSPF; 1.7A {Escherichia coli} PDB: 2bjw_A 2c96_A* 2c98_A* 2c99_A* 2c9c_A* 2vii_A*
Probab=89.43 E-value=0.29 Score=48.58 Aligned_cols=23 Identities=22% Similarity=0.395 Sum_probs=21.2
Q ss_pred EEEEECCCCCcHHHHHHHHHHhC
Q 006117 68 LVGVAGPSGAGKTVFTEKVLNFM 90 (660)
Q Consensus 68 IIGI~GpSGSGKSTLak~L~~lL 90 (660)
-+.|.|++|+|||++++.|+...
T Consensus 31 ~vll~G~~GtGKt~la~~i~~~~ 53 (265)
T 2bjv_A 31 PVLIIGERGTGKELIASRLHYLS 53 (265)
T ss_dssp CEEEECCTTSCHHHHHHHHHHTS
T ss_pred CEEEECCCCCcHHHHHHHHHHhc
Confidence 57789999999999999999987
No 489
>3u61_B DNA polymerase accessory protein 44; AAA+, ATP hydrolase, clamp loader, sliding clamp, primer-TEM DNA, DNA binding protein-DNA complex; HET: DNA ADP 08T; 3.20A {Enterobacteria phage T4} PDB: 3u5z_B* 3u60_B*
Probab=89.42 E-value=0.26 Score=50.29 Aligned_cols=45 Identities=11% Similarity=0.172 Sum_probs=31.6
Q ss_pred EecceeeccCCcceEEEEECCCCCcHHHHHHHHHHhCCCceEEEec
Q 006117 54 RACQLLAQKNHGIILVGVAGPSGAGKTVFTEKVLNFMPSIAVITMD 99 (660)
Q Consensus 54 ~~Isl~i~~ge~~~IIGI~GpSGSGKSTLak~L~~lLp~~g~I~lD 99 (660)
+.+.-.+..+..+.++.+.||+|+||||+++.++..+ +...+.++
T Consensus 36 ~~l~~~l~~~~~~~~~L~~G~~G~GKT~la~~la~~l-~~~~~~i~ 80 (324)
T 3u61_B 36 ETFKSITSKGKIPHIILHSPSPGTGKTTVAKALCHDV-NADMMFVN 80 (324)
T ss_dssp HHHHHHHHTTCCCSEEEECSSTTSSHHHHHHHHHHHT-TEEEEEEE
T ss_pred HHHHHHHHcCCCCeEEEeeCcCCCCHHHHHHHHHHHh-CCCEEEEc
Confidence 3333344556656678888999999999999999987 33344443
No 490
>2aka_B Dynamin-1; fusion protein, GTPase domain, myosin, contractIle protein; 1.90A {Rattus norvegicus} SCOP: c.37.1.8 PDB: 3l43_A*
Probab=89.34 E-value=0.18 Score=50.59 Aligned_cols=24 Identities=25% Similarity=0.367 Sum_probs=21.9
Q ss_pred ceEEEEECCCCCcHHHHHHHHHHh
Q 006117 66 IILVGVAGPSGAGKTVFTEKVLNF 89 (660)
Q Consensus 66 ~~IIGI~GpSGSGKSTLak~L~~l 89 (660)
...|+|+|.+|+|||||++.|.+.
T Consensus 26 ~~~i~vvG~~~~GKSSLln~l~g~ 49 (299)
T 2aka_B 26 LPQIAVVGGQSAGKSSVLENFVGR 49 (299)
T ss_dssp CCEEEEEEBTTSCHHHHHHHHHTS
T ss_pred CCeEEEEeCCCCCHHHHHHHHHCC
Confidence 457999999999999999999876
No 491
>3bh0_A DNAB-like replicative helicase; ATPase, replication; 2.35A {Bacillus phage SPP1}
Probab=89.33 E-value=0.23 Score=51.52 Aligned_cols=35 Identities=23% Similarity=0.249 Sum_probs=28.6
Q ss_pred EEecceeeccCCcceEEEEECCCCCcHHHHHHHHHHhC
Q 006117 53 IRACQLLAQKNHGIILVGVAGPSGAGKTVFTEKVLNFM 90 (660)
Q Consensus 53 L~~Isl~i~~ge~~~IIGI~GpSGSGKSTLak~L~~lL 90 (660)
|+.+.--+++|+ ++.|+|++|+|||||+..++...
T Consensus 58 LD~~lgGl~~G~---l~li~G~pG~GKTtl~l~ia~~~ 92 (315)
T 3bh0_A 58 LDRMTYGYKRRN---FVLIAARPSMGKTAFALKQAKNM 92 (315)
T ss_dssp HHHHHSSBCTTC---EEEEECCTTSSHHHHHHHHHHHH
T ss_pred HHhhcCCCCCCc---EEEEEeCCCCCHHHHHHHHHHHH
Confidence 455544577888 99999999999999999888654
No 492
>4b4t_K 26S protease regulatory subunit 6B homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=89.29 E-value=0.3 Score=53.40 Aligned_cols=35 Identities=31% Similarity=0.365 Sum_probs=28.0
Q ss_pred ceEEEEECCCCCcHHHHHHHHHHhCCCceEEEecCc
Q 006117 66 IILVGVAGPSGAGKTVFTEKVLNFMPSIAVITMDNY 101 (660)
Q Consensus 66 ~~IIGI~GpSGSGKSTLak~L~~lLp~~g~I~lDg~ 101 (660)
|.=|.+.||+|+|||+++++++..+ +...+.+++.
T Consensus 206 prGiLL~GPPGtGKT~lakAiA~~~-~~~~~~v~~~ 240 (428)
T 4b4t_K 206 PRGVLLYGPPGTGKTMLVKAVANST-KAAFIRVNGS 240 (428)
T ss_dssp CCEEEEESCTTTTHHHHHHHHHHHH-TCEEEEEEGG
T ss_pred CceEEEECCCCCCHHHHHHHHHHHh-CCCeEEEecc
Confidence 3458899999999999999999987 4556666543
No 493
>4djt_A GTP-binding nuclear protein GSP1; structural genomics, seattle structural genomics center for infectious disease, ssgcid, RAN family; HET: GDP; 1.80A {Encephalitozoon cuniculi}
Probab=89.09 E-value=0.093 Score=50.02 Aligned_cols=26 Identities=27% Similarity=0.418 Sum_probs=21.3
Q ss_pred CcceEEEEECCCCCcHHHHHHHHHHh
Q 006117 64 HGIILVGVAGPSGAGKTVFTEKVLNF 89 (660)
Q Consensus 64 e~~~IIGI~GpSGSGKSTLak~L~~l 89 (660)
...+-|+|+|.+|+|||||++.|.+.
T Consensus 9 ~~~~ki~vvG~~~~GKSsli~~l~~~ 34 (218)
T 4djt_A 9 ELTYKICLIGDGGVGKTTYINRVLDG 34 (218)
T ss_dssp -CEEEEEEECCTTSSHHHHHCBCTTC
T ss_pred cCccEEEEECCCCCCHHHHHHHHhcC
Confidence 34578999999999999999987743
No 494
>1osn_A Thymidine kinase, VZV-TK; chickenpox, BVDU-MP, transferase; HET: BVP ADP; 3.20A {Human herpesvirus 3} SCOP: c.37.1.1
Probab=89.09 E-value=0.19 Score=53.34 Aligned_cols=29 Identities=24% Similarity=0.339 Sum_probs=25.5
Q ss_pred ceEEEEECCCCCcHHHHH-HHHHHhCCCce
Q 006117 66 IILVGVAGPSGAGKTVFT-EKVLNFMPSIA 94 (660)
Q Consensus 66 ~~IIGI~GpSGSGKSTLa-k~L~~lLp~~g 94 (660)
..+|.|-|+-||||||++ +.|...++..|
T Consensus 12 ~~~I~iEG~~GaGKTT~~~~~L~~~l~~~g 41 (341)
T 1osn_A 12 VLRIYLDGAYGIGKTTAAEEFLHHFAITPN 41 (341)
T ss_dssp EEEEEEEESSSSCTTHHHHHHHHTTTTSGG
T ss_pred ceEEEEeCCCCCCHHHHHHHHHHHHHhhCC
Confidence 469999999999999999 99999985444
No 495
>3q3j_B RHO-related GTP-binding protein RHO6; RAS-binding domain, plexin, small GTPase, structural genomic consortium, SGC; HET: GNP; 1.97A {Homo sapiens} PDB: 2rex_B* 2cls_A*
Probab=89.06 E-value=0.26 Score=47.36 Aligned_cols=25 Identities=16% Similarity=0.126 Sum_probs=21.6
Q ss_pred cceEEEEECCCCCcHHHHHHHHHHh
Q 006117 65 GIILVGVAGPSGAGKTVFTEKVLNF 89 (660)
Q Consensus 65 ~~~IIGI~GpSGSGKSTLak~L~~l 89 (660)
..+-|.|+|.+|+|||||++.+.+.
T Consensus 26 ~~~ki~vvG~~~vGKSsL~~~l~~~ 50 (214)
T 3q3j_B 26 ARCKLVLVGDVQCGKTAMLQVLAKD 50 (214)
T ss_dssp -CEEEEEECSTTSSHHHHHHHHHHS
T ss_pred ceEEEEEECcCCCCHHHHHHHHhcC
Confidence 3467999999999999999998875
No 496
>4b4t_M 26S protease regulatory subunit 6A; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=88.91 E-value=0.33 Score=53.21 Aligned_cols=35 Identities=17% Similarity=0.217 Sum_probs=28.2
Q ss_pred ceEEEEECCCCCcHHHHHHHHHHhCCCceEEEecCc
Q 006117 66 IILVGVAGPSGAGKTVFTEKVLNFMPSIAVITMDNY 101 (660)
Q Consensus 66 ~~IIGI~GpSGSGKSTLak~L~~lLp~~g~I~lDg~ 101 (660)
|.=|.+.||+|+|||++++++++.+ +...+.+++.
T Consensus 215 prGvLLyGPPGTGKTllAkAiA~e~-~~~f~~v~~s 249 (434)
T 4b4t_M 215 PKGALMYGPPGTGKTLLARACAAQT-NATFLKLAAP 249 (434)
T ss_dssp CCEEEEESCTTSSHHHHHHHHHHHH-TCEEEEEEGG
T ss_pred CCeeEEECcCCCCHHHHHHHHHHHh-CCCEEEEehh
Confidence 4568899999999999999999987 4456666553
No 497
>2qp9_X Vacuolar protein sorting-associated protein 4; ATPase domain, beta domain, C-terminal helix, ATP-binding, E nucleotide-binding; 2.90A {Saccharomyces cerevisiae} PDB: 2qpa_A*
Probab=88.78 E-value=0.26 Score=51.83 Aligned_cols=24 Identities=25% Similarity=0.357 Sum_probs=21.8
Q ss_pred eEEEEECCCCCcHHHHHHHHHHhC
Q 006117 67 ILVGVAGPSGAGKTVFTEKVLNFM 90 (660)
Q Consensus 67 ~IIGI~GpSGSGKSTLak~L~~lL 90 (660)
.-|.|.||+|+|||++++.++..+
T Consensus 85 ~~iLL~GppGtGKT~la~ala~~~ 108 (355)
T 2qp9_X 85 SGILLYGPPGTGKSYLAKAVATEA 108 (355)
T ss_dssp CCEEEECSTTSCHHHHHHHHHHHH
T ss_pred ceEEEECCCCCcHHHHHHHHHHHh
Confidence 357889999999999999999987
No 498
>1tue_A Replication protein E1; helicase, replication, E1E2 complex, AAA+ protein; 2.10A {Human papillomavirus type 18} SCOP: c.37.1.20
Probab=88.75 E-value=0.19 Score=50.07 Aligned_cols=23 Identities=26% Similarity=0.605 Sum_probs=21.7
Q ss_pred EEEEECCCCCcHHHHHHHHHHhC
Q 006117 68 LVGVAGPSGAGKTVFTEKVLNFM 90 (660)
Q Consensus 68 IIGI~GpSGSGKSTLak~L~~lL 90 (660)
.+.|.||.|+||||++.+|+..+
T Consensus 60 ~ili~GPPGtGKTt~a~ala~~l 82 (212)
T 1tue_A 60 CLVFCGPANTGKSYFGMSFIHFI 82 (212)
T ss_dssp EEEEESCGGGCHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHh
Confidence 68999999999999999999987
No 499
>4b4t_J 26S protease regulatory subunit 8 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=88.71 E-value=0.31 Score=52.92 Aligned_cols=34 Identities=26% Similarity=0.358 Sum_probs=27.5
Q ss_pred eEEEEECCCCCcHHHHHHHHHHhCCCceEEEecCc
Q 006117 67 ILVGVAGPSGAGKTVFTEKVLNFMPSIAVITMDNY 101 (660)
Q Consensus 67 ~IIGI~GpSGSGKSTLak~L~~lLp~~g~I~lDg~ 101 (660)
.=|.+.||+|+|||++++++++.+ +...+.+++-
T Consensus 183 rGvLL~GPPGTGKTllAkAiA~e~-~~~f~~v~~s 216 (405)
T 4b4t_J 183 KGVILYGPPGTGKTLLARAVAHHT-DCKFIRVSGA 216 (405)
T ss_dssp CCEEEESCSSSSHHHHHHHHHHHH-TCEEEEEEGG
T ss_pred CceEEeCCCCCCHHHHHHHHHHhh-CCCceEEEhH
Confidence 458899999999999999999987 4556666553
No 500
>2xxa_A Signal recognition particle protein; protein transport, RNA/RNA binding protein, hydrolase, gtpas; HET: GCP; 3.94A {Escherichia coli} PDB: 2j28_9
Probab=88.71 E-value=0.22 Score=54.39 Aligned_cols=27 Identities=37% Similarity=0.426 Sum_probs=23.9
Q ss_pred CcceEEEEECCCCCcHHHHHHHHHHhC
Q 006117 64 HGIILVGVAGPSGAGKTVFTEKVLNFM 90 (660)
Q Consensus 64 e~~~IIGI~GpSGSGKSTLak~L~~lL 90 (660)
.++.+|+++|++|+||||++..|+..+
T Consensus 98 ~~~~vI~ivG~~GvGKTT~a~~LA~~l 124 (433)
T 2xxa_A 98 QPPAVVLMAGLQGAGKTTSVGKLGKFL 124 (433)
T ss_dssp SSSEEEEEECSTTSSHHHHHHHHHHHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHH
Confidence 456799999999999999999999776
Done!