BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 006120
(660 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|1W3B|A Chain A, The Superhelical Tpr Domain Of O-Linked Glcnac Transferase
Reveals Structural Similarities To Importin Alpha.
pdb|1W3B|B Chain B, The Superhelical Tpr Domain Of O-Linked Glcnac Transferase
Reveals Structural Similarities To Importin Alpha
Length = 388
Score = 73.6 bits (179), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 56/197 (28%), Positives = 87/197 (44%), Gaps = 28/197 (14%)
Query: 125 FDGHMAIGRVLYEHQLFKEALVSFKRACELQPTDVRPHFRAGN--CLY--------VLGR 174
D ++ +G VL E ++F A+ ++ RA L P H GN C+Y +
Sbjct: 203 LDAYINLGNVLKEARIFDRAVAAYLRALSLSPNHAVVH---GNLACVYYEQGLIDLAIDT 259
Query: 175 YRXXXXXXXXXXXXXXTGGNQWAYLLPQIYVNLGIALEGEGMVLSACEYYRESAILCPTH 234
YR P Y NL AL+ +G V A + Y + LCPTH
Sbjct: 260 YRRAIELQPH---------------FPDAYCNLANALKEKGSVAEAEDCYNTALRLCPTH 304
Query: 235 FRALKLLGSALFGVGEYRAAVKALEEAIFIKPDYADAHCDLASALHAMGEDERAIEVFQK 294
+L L + G AV+ +A+ + P++A AH +LAS L G+ + A+ +++
Sbjct: 305 ADSLNNLANIKREQGNIEEAVRLYRKALEVFPEFAAAHSNLASVLQQQGKLQEALMHYKE 364
Query: 295 AIDLKPGHVDALYNLGG 311
AI + P DA N+G
Sbjct: 365 AIRISPTFADAYSNMGN 381
Score = 57.0 bits (136), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 38/115 (33%), Positives = 54/115 (46%)
Query: 199 LLPQIYVNLGIALEGEGMVLSACEYYRESAILCPTHFRALKLLGSALFGVGEYRAAVKAL 258
LL + Y NLG + G + A E+YR + L P L +AL G+ AV+A
Sbjct: 65 LLAEAYSNLGNVYKERGQLQEAIEHYRHALRLKPDFIDGYINLAAALVAAGDMEGAVQAY 124
Query: 259 EEAIFIKPDYADAHCDLASALHAMGEDERAIEVFQKAIDLKPGHVDALYNLGGLY 313
A+ PD DL + L A+G E A + KAI+ +P A NLG ++
Sbjct: 125 VSALQYNPDLYCVRSDLGNLLKALGRLEEAKACYLKAIETQPNFAVAWSNLGCVF 179
Score = 53.1 bits (126), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 33/109 (30%), Positives = 50/109 (45%)
Query: 204 YVNLGIALEGEGMVLSACEYYRESAILCPTHFRALKLLGSALFGVGEYRAAVKALEEAIF 263
Y+NLG L+ + A Y + L P H L + G A+ AI
Sbjct: 206 YINLGNVLKEARIFDRAVAAYLRALSLSPNHAVVHGNLACVYYEQGLIDLAIDTYRRAIE 265
Query: 264 IKPDYADAHCDLASALHAMGEDERAIEVFQKAIDLKPGHVDALYNLGGL 312
++P + DA+C+LA+AL G A + + A+ L P H D+L NL +
Sbjct: 266 LQPHFPDAYCNLANALKEKGSVAEAEDCYNTALRLCPTHADSLNNLANI 314
Score = 52.8 bits (125), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 45/193 (23%), Positives = 77/193 (39%), Gaps = 8/193 (4%)
Query: 119 RSREEAFDGHMAIGRVLYEHQLFKEALVSFKRACELQPTDVRPHFRAGNCLYVLGRYRXX 178
R + + DG++ + L + A+ ++ A + P GN L LGR
Sbjct: 95 RLKPDFIDGYINLAAALVAAGDMEGAVQAYVSALQYNPDLYCVRSDLGNLLKALGRLEEA 154
Query: 179 XXXXXXXXXXXXTGGNQWAYLLPQIYVNLGIALEGEGMVLSACEYYRESAILCPTHFRAL 238
W+ NLG +G + A ++ ++ L P A
Sbjct: 155 KACYLKAIETQPNFAVAWS--------NLGCVFNAQGEIWLAIHHFEKAVTLDPNFLDAY 206
Query: 239 KLLGSALFGVGEYRAAVKALEEAIFIKPDYADAHCDLASALHAMGEDERAIEVFQKAIDL 298
LG+ L + AV A A+ + P++A H +LA + G + AI+ +++AI+L
Sbjct: 207 INLGNVLKEARIFDRAVAAYLRALSLSPNHAVVHGNLACVYYEQGLIDLAIDTYRRAIEL 266
Query: 299 KPGHVDALYNLGG 311
+P DA NL
Sbjct: 267 QPHFPDAYCNLAN 279
Score = 42.4 bits (98), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 31/118 (26%), Positives = 53/118 (44%), Gaps = 3/118 (2%)
Query: 201 PQIYV---NLGIALEGEGMVLSACEYYRESAILCPTHFRALKLLGSALFGVGEYRAAVKA 257
P +Y +LG L+ G + A Y ++ P A LG GE A+
Sbjct: 132 PDLYCVRSDLGNLLKALGRLEEAKACYLKAIETQPNFAVAWSNLGCVFNAQGEIWLAIHH 191
Query: 258 LEEAIFIKPDYADAHCDLASALHAMGEDERAIEVFQKAIDLKPGHVDALYNLGGLYMD 315
E+A+ + P++ DA+ +L + L +RA+ + +A+ L P H NL +Y +
Sbjct: 192 FEKAVTLDPNFLDAYINLGNVLKEARIFDRAVAAYLRALSLSPNHAVVHGNLACVYYE 249
Score = 39.3 bits (90), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 24/81 (29%), Positives = 41/81 (50%)
Query: 232 PTHFRALKLLGSALFGVGEYRAAVKALEEAIFIKPDYADAHCDLASALHAMGEDERAIEV 291
P A LG+ G+ + A++ A+ +KPD+ D + +LA+AL A G+ E A++
Sbjct: 64 PLLAEAYSNLGNVYKERGQLQEAIEHYRHALRLKPDFIDGYINLAAALVAAGDMEGAVQA 123
Query: 292 FQKAIDLKPGHVDALYNLGGL 312
+ A+ P +LG L
Sbjct: 124 YVSALQYNPDLYCVRSDLGNL 144
Score = 32.7 bits (73), Expect = 0.64, Method: Compositional matrix adjust.
Identities = 24/83 (28%), Positives = 37/83 (44%), Gaps = 11/83 (13%)
Query: 229 ILCPTHFRALKLLGSALFGVGEYRAAVKALEEAIFIKPDYADAHCDLASALHAMGEDERA 288
+L HF+ +L SA F AI P A+A+ +L + G+ + A
Sbjct: 38 LLSSIHFQCRRLDRSAHFST-----------LAIKQNPLLAEAYSNLGNVYKERGQLQEA 86
Query: 289 IEVFQKAIDLKPGHVDALYNLGG 311
IE ++ A+ LKP +D NL
Sbjct: 87 IEHYRHALRLKPDFIDGYINLAA 109
>pdb|2FO7|A Chain A, Crystal Structure Of An 8 Repeat Consensus Tpr Superhelix
(Trigonal Crystal Form)
pdb|2HYZ|A Chain A, Crystal Structure Of An 8 Repeat Consensus Tpr Superhelix
(Orthorombic Crystal Form)
Length = 136
Score = 67.4 bits (163), Expect = 2e-11, Method: Composition-based stats.
Identities = 39/112 (34%), Positives = 64/112 (57%)
Query: 202 QIYVNLGIALEGEGMVLSACEYYRESAILCPTHFRALKLLGSALFGVGEYRAAVKALEEA 261
+ + NLG A +G A EYY+++ L P A LG+A + G+Y A++ ++A
Sbjct: 2 EAWYNLGNAYYKQGDYDEAIEYYQKALELDPRSAEAWYNLGNAYYKQGDYDEAIEYYQKA 61
Query: 262 IFIKPDYADAHCDLASALHAMGEDERAIEVFQKAIDLKPGHVDALYNLGGLY 313
+ + P A+A +L +A + G+ + AIE +QKA++L P +A YNLG Y
Sbjct: 62 LELDPRSAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPRSAEAWYNLGNAY 113
Score = 56.6 bits (135), Expect = 4e-08, Method: Composition-based stats.
Identities = 33/99 (33%), Positives = 57/99 (57%)
Query: 202 QIYVNLGIALEGEGMVLSACEYYRESAILCPTHFRALKLLGSALFGVGEYRAAVKALEEA 261
+ + NLG A +G A EYY+++ L P A LG+A + G+Y A++ ++A
Sbjct: 36 EAWYNLGNAYYKQGDYDEAIEYYQKALELDPRSAEAWYNLGNAYYKQGDYDEAIEYYQKA 95
Query: 262 IFIKPDYADAHCDLASALHAMGEDERAIEVFQKAIDLKP 300
+ + P A+A +L +A + G+ + AIE +QKA++L P
Sbjct: 96 LELDPRSAEAWYNLGNAYYKQGDYDEAIEYYQKALELDP 134
Score = 39.7 bits (91), Expect = 0.005, Method: Composition-based stats.
Identities = 19/45 (42%), Positives = 29/45 (64%)
Query: 269 ADAHCDLASALHAMGEDERAIEVFQKAIDLKPGHVDALYNLGGLY 313
A+A +L +A + G+ + AIE +QKA++L P +A YNLG Y
Sbjct: 1 AEAWYNLGNAYYKQGDYDEAIEYYQKALELDPRSAEAWYNLGNAY 45
>pdb|1NA0|A Chain A, Design Of Stable Alpha-Helical Arrays From An Idealized
Tpr Motif
pdb|1NA0|B Chain B, Design Of Stable Alpha-Helical Arrays From An Idealized
Tpr Motif
Length = 125
Score = 66.2 bits (160), Expect = 5e-11, Method: Composition-based stats.
Identities = 37/109 (33%), Positives = 65/109 (59%)
Query: 202 QIYVNLGIALEGEGMVLSACEYYRESAILCPTHFRALKLLGSALFGVGEYRAAVKALEEA 261
+ + NLG A +G A EYY+++ L P + A LG+A + G+Y A++ ++A
Sbjct: 10 EAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAWYNLGNAYYKQGDYDEAIEYYQKA 69
Query: 262 IFIKPDYADAHCDLASALHAMGEDERAIEVFQKAIDLKPGHVDALYNLG 310
+ + P+ A+A +L +A + G+ + AIE +QKA++L P + +A NLG
Sbjct: 70 LELDPNNAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAKQNLG 118
Score = 58.2 bits (139), Expect = 2e-08, Method: Composition-based stats.
Identities = 27/73 (36%), Positives = 48/73 (65%)
Query: 241 LGSALFGVGEYRAAVKALEEAIFIKPDYADAHCDLASALHAMGEDERAIEVFQKAIDLKP 300
LG+A + G+Y A++ ++A+ + P+ A+A +L +A + G+ + AIE +QKA++L P
Sbjct: 15 LGNAYYKQGDYDEAIEYYQKALELDPNNAEAWYNLGNAYYKQGDYDEAIEYYQKALELDP 74
Query: 301 GHVDALYNLGGLY 313
+ +A YNLG Y
Sbjct: 75 NNAEAWYNLGNAY 87
Score = 42.0 bits (97), Expect = 0.001, Method: Composition-based stats.
Identities = 25/82 (30%), Positives = 45/82 (54%)
Query: 202 QIYVNLGIALEGEGMVLSACEYYRESAILCPTHFRALKLLGSALFGVGEYRAAVKALEEA 261
+ + NLG A +G A EYY+++ L P + A LG+A + G+Y A++ ++A
Sbjct: 44 EAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAWYNLGNAYYKQGDYDEAIEYYQKA 103
Query: 262 IFIKPDYADAHCDLASALHAMG 283
+ + P+ A+A +L +A G
Sbjct: 104 LELDPNNAEAKQNLGNAKQKQG 125
Score = 41.6 bits (96), Expect = 0.001, Method: Composition-based stats.
Identities = 19/45 (42%), Positives = 30/45 (66%)
Query: 269 ADAHCDLASALHAMGEDERAIEVFQKAIDLKPGHVDALYNLGGLY 313
A+A +L +A + G+ + AIE +QKA++L P + +A YNLG Y
Sbjct: 9 AEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAWYNLGNAY 53
>pdb|3VTX|A Chain A, Crystal Structure Of Mama Protein
pdb|3VTX|B Chain B, Crystal Structure Of Mama Protein
pdb|3VTY|A Chain A, Crystal Structure Of Mama
pdb|3VTY|B Chain B, Crystal Structure Of Mama
pdb|3VTY|C Chain C, Crystal Structure Of Mama
pdb|3VTY|D Chain D, Crystal Structure Of Mama
Length = 184
Score = 66.2 bits (160), Expect = 6e-11, Method: Composition-based stats.
Identities = 37/99 (37%), Positives = 57/99 (57%)
Query: 215 GMVLSACEYYRESAILCPTHFRALKLLGSALFGVGEYRAAVKALEEAIFIKPDYADAHCD 274
G+ A E ++ +L T A +LGSA F + E +AA+ AL+ AI + YADA+
Sbjct: 53 GLPNDAIESLKKFVVLDTTSAEAYYILGSANFMIDEKQAAIDALQRAIALNTVYADAYYK 112
Query: 275 LASALHAMGEDERAIEVFQKAIDLKPGHVDALYNLGGLY 313
L +MGE ++AIE ++K I +KPG + A ++G Y
Sbjct: 113 LGLVYDSMGEHDKAIEAYEKTISIKPGFIRAYQSIGLAY 151
Score = 46.2 bits (108), Expect = 5e-05, Method: Composition-based stats.
Identities = 31/111 (27%), Positives = 54/111 (48%)
Query: 203 IYVNLGIALEGEGMVLSACEYYRESAILCPTHFRALKLLGSALFGVGEYRAAVKALEEAI 262
IY+++G +G A Y++ P + L LG +G A+++L++ +
Sbjct: 7 IYMDIGDKKRTKGDFDGAIRAYKKVLKADPNNVETLLKLGKTYMDIGLPNDAIESLKKFV 66
Query: 263 FIKPDYADAHCDLASALHAMGEDERAIEVFQKAIDLKPGHVDALYNLGGLY 313
+ A+A+ L SA + E + AI+ Q+AI L + DA Y LG +Y
Sbjct: 67 VLDTTSAEAYYILGSANFMIDEKQAAIDALQRAIALNTVYADAYYKLGLVY 117
Score = 30.4 bits (67), Expect = 3.7, Method: Composition-based stats.
Identities = 16/52 (30%), Positives = 27/52 (51%)
Query: 241 LGSALFGVGEYRAAVKALEEAIFIKPDYADAHCDLASALHAMGEDERAIEVF 292
LG +GE+ A++A E+ I IKP + A+ + A G + A++ F
Sbjct: 113 LGLVYDSMGEHDKAIEAYEKTISIKPGFIRAYQSIGLAYEGKGLRDEAVKYF 164
>pdb|2WQH|A Chain A, Crystal Structure Of Ctpr3y3
Length = 125
Score = 66.2 bits (160), Expect = 6e-11, Method: Composition-based stats.
Identities = 37/109 (33%), Positives = 65/109 (59%)
Query: 202 QIYVNLGIALEGEGMVLSACEYYRESAILCPTHFRALKLLGSALFGVGEYRAAVKALEEA 261
+ + NLG A +G A EYY+++ L P + A LG+A + G+Y A++ ++A
Sbjct: 10 EAWYNLGNAYYKQGDYDEAIEYYQKALELYPNNAEAWYNLGNAYYKQGDYDEAIEYYQKA 69
Query: 262 IFIKPDYADAHCDLASALHAMGEDERAIEVFQKAIDLKPGHVDALYNLG 310
+ + P+ A+A +L +A + G+ + AIE +QKA++L P + +A NLG
Sbjct: 70 LELYPNNAEAWYNLGNAYYKQGDYDEAIEYYQKALELYPNNAEAKQNLG 118
Score = 57.4 bits (137), Expect = 3e-08, Method: Composition-based stats.
Identities = 27/73 (36%), Positives = 48/73 (65%)
Query: 241 LGSALFGVGEYRAAVKALEEAIFIKPDYADAHCDLASALHAMGEDERAIEVFQKAIDLKP 300
LG+A + G+Y A++ ++A+ + P+ A+A +L +A + G+ + AIE +QKA++L P
Sbjct: 15 LGNAYYKQGDYDEAIEYYQKALELYPNNAEAWYNLGNAYYKQGDYDEAIEYYQKALELYP 74
Query: 301 GHVDALYNLGGLY 313
+ +A YNLG Y
Sbjct: 75 NNAEAWYNLGNAY 87
Score = 42.0 bits (97), Expect = 0.001, Method: Composition-based stats.
Identities = 25/82 (30%), Positives = 45/82 (54%)
Query: 202 QIYVNLGIALEGEGMVLSACEYYRESAILCPTHFRALKLLGSALFGVGEYRAAVKALEEA 261
+ + NLG A +G A EYY+++ L P + A LG+A + G+Y A++ ++A
Sbjct: 44 EAWYNLGNAYYKQGDYDEAIEYYQKALELYPNNAEAWYNLGNAYYKQGDYDEAIEYYQKA 103
Query: 262 IFIKPDYADAHCDLASALHAMG 283
+ + P+ A+A +L +A G
Sbjct: 104 LELYPNNAEAKQNLGNAKQKQG 125
Score = 41.6 bits (96), Expect = 0.002, Method: Composition-based stats.
Identities = 19/45 (42%), Positives = 30/45 (66%)
Query: 269 ADAHCDLASALHAMGEDERAIEVFQKAIDLKPGHVDALYNLGGLY 313
A+A +L +A + G+ + AIE +QKA++L P + +A YNLG Y
Sbjct: 9 AEAWYNLGNAYYKQGDYDEAIEYYQKALELYPNNAEAWYNLGNAY 53
>pdb|3KD7|A Chain A, Designed Tpr Module (Ctpr390) In Complex With Its
Peptide-Ligand (Hsp90 Peptide)
pdb|3KD7|B Chain B, Designed Tpr Module (Ctpr390) In Complex With Its
Peptide-Ligand (Hsp90 Peptide)
pdb|3KD7|C Chain C, Designed Tpr Module (Ctpr390) In Complex With Its
Peptide-Ligand (Hsp90 Peptide)
pdb|3KD7|D Chain D, Designed Tpr Module (Ctpr390) In Complex With Its
Peptide-Ligand (Hsp90 Peptide)
pdb|3KD7|E Chain E, Designed Tpr Module (Ctpr390) In Complex With Its
Peptide-Ligand (Hsp90 Peptide)
Length = 125
Score = 62.0 bits (149), Expect = 9e-10, Method: Composition-based stats.
Identities = 36/109 (33%), Positives = 63/109 (57%)
Query: 202 QIYVNLGIALEGEGMVLSACEYYRESAILCPTHFRALKLLGSALFGVGEYRAAVKALEEA 261
+ + NLG A +G A EYY+++ L P + A LG+A + G+Y+ A++ ++A
Sbjct: 10 EAWKNLGNAYYKQGDYQKAIEYYQKALELDPNNASAWYNLGNAYYKQGDYQKAIEYYQKA 69
Query: 262 IFIKPDYADAHCDLASALHAMGEDERAIEVFQKAIDLKPGHVDALYNLG 310
+ + P+ A A +A + G+ ++AIE +QKA++L P + A NLG
Sbjct: 70 LELDPNNAKAWYRRGNAYYKQGDYQKAIEDYQKALELDPNNAKAKQNLG 118
Score = 55.1 bits (131), Expect = 1e-07, Method: Composition-based stats.
Identities = 27/77 (35%), Positives = 48/77 (62%)
Query: 237 ALKLLGSALFGVGEYRAAVKALEEAIFIKPDYADAHCDLASALHAMGEDERAIEVFQKAI 296
A K LG+A + G+Y+ A++ ++A+ + P+ A A +L +A + G+ ++AIE +QKA+
Sbjct: 11 AWKNLGNAYYKQGDYQKAIEYYQKALELDPNNASAWYNLGNAYYKQGDYQKAIEYYQKAL 70
Query: 297 DLKPGHVDALYNLGGLY 313
+L P + A Y G Y
Sbjct: 71 ELDPNNAKAWYRRGNAY 87
Score = 42.0 bits (97), Expect = 0.001, Method: Composition-based stats.
Identities = 19/45 (42%), Positives = 30/45 (66%)
Query: 269 ADAHCDLASALHAMGEDERAIEVFQKAIDLKPGHVDALYNLGGLY 313
A+A +L +A + G+ ++AIE +QKA++L P + A YNLG Y
Sbjct: 9 AEAWKNLGNAYYKQGDYQKAIEYYQKALELDPNNASAWYNLGNAY 53
Score = 41.6 bits (96), Expect = 0.001, Method: Composition-based stats.
Identities = 30/118 (25%), Positives = 51/118 (43%), Gaps = 8/118 (6%)
Query: 166 GNCLYVLGRYRXXXXXXXXXXXXXXTGGNQWAYLLPQIYVNLGIALEGEGMVLSACEYYR 225
GN Y G Y+ + W NLG A +G A EYY+
Sbjct: 16 GNAYYKQGDYQKAIEYYQKALELDPNNASAW--------YNLGNAYYKQGDYQKAIEYYQ 67
Query: 226 ESAILCPTHFRALKLLGSALFGVGEYRAAVKALEEAIFIKPDYADAHCDLASALHAMG 283
++ L P + +A G+A + G+Y+ A++ ++A+ + P+ A A +L +A G
Sbjct: 68 KALELDPNNAKAWYRRGNAYYKQGDYQKAIEDYQKALELDPNNAKAKQNLGNAKQKQG 125
Score = 32.7 bits (73), Expect = 0.63, Method: Composition-based stats.
Identities = 13/46 (28%), Positives = 26/46 (56%)
Query: 131 IGRVLYEHQLFKEALVSFKRACELQPTDVRPHFRAGNCLYVLGRYR 176
+G Y+ +++A+ +++A EL P + + +R GN Y G Y+
Sbjct: 49 LGNAYYKQGDYQKAIEYYQKALELDPNNAKAWYRRGNAYYKQGDYQ 94
>pdb|3PE3|A Chain A, Structure Of Human O-Glcnac Transferase And Its Complex
With A Peptide Substrate
pdb|3PE3|B Chain B, Structure Of Human O-Glcnac Transferase And Its Complex
With A Peptide Substrate
pdb|3PE3|C Chain C, Structure Of Human O-Glcnac Transferase And Its Complex
With A Peptide Substrate
pdb|3PE3|D Chain D, Structure Of Human O-Glcnac Transferase And Its Complex
With A Peptide Substrate
pdb|3PE4|A Chain A, Structure Of Human O-Glcnac Transferase And Its Complex
With A Peptide Substrate
pdb|3PE4|C Chain C, Structure Of Human O-Glcnac Transferase And Its Complex
With A Peptide Substrate
pdb|3TAX|A Chain A, A Neutral Diphosphate Mimic Crosslinks The Active Site Of
Human O- Glcnac Transferase
pdb|3TAX|C Chain C, A Neutral Diphosphate Mimic Crosslinks The Active Site Of
Human O- Glcnac Transferase
pdb|4AY5|A Chain A, Human O-Glcnac Transferase (Ogt) In Complex With Udp And
Glycopeptide
pdb|4AY5|B Chain B, Human O-Glcnac Transferase (Ogt) In Complex With Udp And
Glycopeptide
pdb|4AY5|C Chain C, Human O-Glcnac Transferase (Ogt) In Complex With Udp And
Glycopeptide
pdb|4AY5|D Chain D, Human O-Glcnac Transferase (Ogt) In Complex With Udp And
Glycopeptide
pdb|4AY6|A Chain A, Human O-Glcnac Transferase (Ogt) In Complex With
Udp-5sglcnac And Substrate Peptide
pdb|4AY6|B Chain B, Human O-Glcnac Transferase (Ogt) In Complex With
Udp-5sglcnac And Substrate Peptide
pdb|4AY6|C Chain C, Human O-Glcnac Transferase (Ogt) In Complex With
Udp-5sglcnac And Substrate Peptide
pdb|4AY6|D Chain D, Human O-Glcnac Transferase (Ogt) In Complex With
Udp-5sglcnac And Substrate Peptide
pdb|4GYW|A Chain A, Crystal Structure Of Human O-Glcnac Transferase In Complex
With Udp And A Glycopeptide
pdb|4GYW|C Chain C, Crystal Structure Of Human O-Glcnac Transferase In Complex
With Udp And A Glycopeptide
pdb|4GYY|A Chain A, Crystal Structure Of Human O-Glcnac Transferase With
Udp-5sglcnac And A Peptide Substrate
pdb|4GYY|C Chain C, Crystal Structure Of Human O-Glcnac Transferase With
Udp-5sglcnac And A Peptide Substrate
pdb|4GZ3|A Chain A, Crystal Structure Of Human O-Glcnac Transferase With Udp
And A Thioglycopeptide
pdb|4GZ3|C Chain C, Crystal Structure Of Human O-Glcnac Transferase With Udp
And A Thioglycopeptide
pdb|4GZ5|A Chain A, Crystal Structure Of Human O-Glcnac Transferase With
Udp-Glcnac
pdb|4GZ5|B Chain B, Crystal Structure Of Human O-Glcnac Transferase With
Udp-Glcnac
pdb|4GZ5|C Chain C, Crystal Structure Of Human O-Glcnac Transferase With
Udp-Glcnac
pdb|4GZ5|D Chain D, Crystal Structure Of Human O-Glcnac Transferase With
Udp-Glcnac
pdb|4GZ6|A Chain A, Crystal Structure Of Human O-Glcnac Transferase With
Udp-5sglcnac
pdb|4GZ6|B Chain B, Crystal Structure Of Human O-Glcnac Transferase With
Udp-5sglcnac
pdb|4GZ6|C Chain C, Crystal Structure Of Human O-Glcnac Transferase With
Udp-5sglcnac
pdb|4GZ6|D Chain D, Crystal Structure Of Human O-Glcnac Transferase With
Udp-5sglcnac
Length = 723
Score = 58.9 bits (141), Expect = 8e-09, Method: Compositional matrix adjust.
Identities = 35/107 (32%), Positives = 55/107 (51%)
Query: 204 YVNLGIALEGEGMVLSACEYYRESAILCPTHFRALKLLGSALFGVGEYRAAVKALEEAIF 263
+ NL L+ +G + A +Y+E+ + PT A +G+ L + + + A++ AI
Sbjct: 46 HSNLASVLQQQGKLQEALMHYKEAIRISPTFADAYSNMGNTLKEMQDVQGALQCYTRAIQ 105
Query: 264 IKPDYADAHCDLASALHAMGEDERAIEVFQKAIDLKPGHVDALYNLG 310
I P +ADAH +LAS G AI ++ A+ LKP DA NL
Sbjct: 106 INPAFADAHSNLASIHKDSGNIPEAIASYRTALKLKPDFPDAYCNLA 152
Score = 53.5 bits (127), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 32/110 (29%), Positives = 55/110 (50%)
Query: 206 NLGIALEGEGMVLSACEYYRESAILCPTHFRALKLLGSALFGVGEYRAAVKALEEAIFIK 265
NL +G + A YR++ + P A L S L G+ + A+ +EAI I
Sbjct: 14 NLANIKREQGNIEEAVRLYRKALEVFPEFAAAHSNLASVLQQQGKLQEALMHYKEAIRIS 73
Query: 266 PDYADAHCDLASALHAMGEDERAIEVFQKAIDLKPGHVDALYNLGGLYMD 315
P +ADA+ ++ + L M + + A++ + +AI + P DA NL ++ D
Sbjct: 74 PTFADAYSNMGNTLKEMQDVQGALQCYTRAIQINPAFADAHSNLASIHKD 123
Score = 51.2 bits (121), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 27/81 (33%), Positives = 44/81 (54%)
Query: 231 CPTHFRALKLLGSALFGVGEYRAAVKALEEAIFIKPDYADAHCDLASALHAMGEDERAIE 290
CPTH +L L + G AV+ +A+ + P++A AH +LAS L G+ + A+
Sbjct: 5 CPTHADSLNNLANIKREQGNIEEAVRLYRKALEVFPEFAAAHSNLASVLQQQGKLQEALM 64
Query: 291 VFQKAIDLKPGHVDALYNLGG 311
+++AI + P DA N+G
Sbjct: 65 HYKEAIRISPTFADAYSNMGN 85
Score = 37.0 bits (84), Expect = 0.032, Method: Compositional matrix adjust.
Identities = 26/88 (29%), Positives = 40/88 (45%), Gaps = 4/88 (4%)
Query: 204 YVNLGIALEGEGMVLSACEYYRESAILCPTHFRALKLLGSALFGVGEYRAAVKALEEAIF 263
Y N+G L+ V A + Y + + P A L S G A+ + A+
Sbjct: 80 YSNMGNTLKEMQDVQGALQCYTRAIQINPAFADAHSNLASIHKDSGNIPEAIASYRTALK 139
Query: 264 IKPDYADAHCDLASALHAMGE----DER 287
+KPD+ DA+C+LA L + + DER
Sbjct: 140 LKPDFPDAYCNLAHCLQIVCDWTDYDER 167
>pdb|1NA3|A Chain A, Design Of Stable Alpha-Helical Arrays From An Idealized
Tpr Motif
pdb|1NA3|B Chain B, Design Of Stable Alpha-Helical Arrays From An Idealized
Tpr Motif
Length = 91
Score = 52.4 bits (124), Expect = 7e-07, Method: Composition-based stats.
Identities = 25/70 (35%), Positives = 46/70 (65%)
Query: 241 LGSALFGVGEYRAAVKALEEAIFIKPDYADAHCDLASALHAMGEDERAIEVFQKAIDLKP 300
LG+A + G+Y A++ ++A+ + P+ A+A +L +A + G+ + AIE +QKA++L P
Sbjct: 15 LGNAYYKQGDYDEAIEYYQKALELDPNNAEAWYNLGNAYYKQGDYDEAIEYYQKALELDP 74
Query: 301 GHVDALYNLG 310
+ +A NLG
Sbjct: 75 NNAEAKQNLG 84
Score = 42.0 bits (97), Expect = 0.001, Method: Composition-based stats.
Identities = 25/82 (30%), Positives = 45/82 (54%)
Query: 202 QIYVNLGIALEGEGMVLSACEYYRESAILCPTHFRALKLLGSALFGVGEYRAAVKALEEA 261
+ + NLG A +G A EYY+++ L P + A LG+A + G+Y A++ ++A
Sbjct: 10 EAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAWYNLGNAYYKQGDYDEAIEYYQKA 69
Query: 262 IFIKPDYADAHCDLASALHAMG 283
+ + P+ A+A +L +A G
Sbjct: 70 LELDPNNAEAKQNLGNAKQKQG 91
Score = 41.6 bits (96), Expect = 0.001, Method: Composition-based stats.
Identities = 19/45 (42%), Positives = 30/45 (66%)
Query: 269 ADAHCDLASALHAMGEDERAIEVFQKAIDLKPGHVDALYNLGGLY 313
A+A +L +A + G+ + AIE +QKA++L P + +A YNLG Y
Sbjct: 9 AEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAWYNLGNAY 53
Score = 30.0 bits (66), Expect = 4.4, Method: Composition-based stats.
Identities = 13/45 (28%), Positives = 22/45 (48%)
Query: 131 IGRVLYEHQLFKEALVSFKRACELQPTDVRPHFRAGNCLYVLGRY 175
+G Y+ + EA+ +++A EL P + + GN Y G Y
Sbjct: 15 LGNAYYKQGDYDEAIEYYQKALELDPNNAEAWYNLGNAYYKQGDY 59
>pdb|2AVP|A Chain A, Crystal Structure Of An 8 Repeat Consensus Tpr Superhelix
Length = 70
Score = 43.9 bits (102), Expect = 3e-04, Method: Composition-based stats.
Identities = 21/60 (35%), Positives = 39/60 (65%)
Query: 241 LGSALFGVGEYRAAVKALEEAIFIKPDYADAHCDLASALHAMGEDERAIEVFQKAIDLKP 300
LG+A + G+Y A++ ++A+ + P A+A +L +A + G+ + AIE +QKA++L P
Sbjct: 9 LGNAYYKQGDYDEAIEYYQKALELDPRSAEAWYNLGNAYYKQGDYDEAIEYYQKALELDP 68
Score = 39.7 bits (91), Expect = 0.005, Method: Composition-based stats.
Identities = 19/45 (42%), Positives = 29/45 (64%)
Query: 269 ADAHCDLASALHAMGEDERAIEVFQKAIDLKPGHVDALYNLGGLY 313
A+A +L +A + G+ + AIE +QKA++L P +A YNLG Y
Sbjct: 3 AEAWYNLGNAYYKQGDYDEAIEYYQKALELDPRSAEAWYNLGNAY 47
Score = 33.5 bits (75), Expect = 0.40, Method: Composition-based stats.
Identities = 20/65 (30%), Positives = 35/65 (53%)
Query: 202 QIYVNLGIALEGEGMVLSACEYYRESAILCPTHFRALKLLGSALFGVGEYRAAVKALEEA 261
+ + NLG A +G A EYY+++ L P A LG+A + G+Y A++ ++A
Sbjct: 4 EAWYNLGNAYYKQGDYDEAIEYYQKALELDPRSAEAWYNLGNAYYKQGDYDEAIEYYQKA 63
Query: 262 IFIKP 266
+ + P
Sbjct: 64 LELDP 68
>pdb|2J9Q|A Chain A, A Novel Conformation For The Tpr Domain Of Pex5p
pdb|2J9Q|B Chain B, A Novel Conformation For The Tpr Domain Of Pex5p
Length = 328
Score = 41.6 bits (96), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 21/67 (31%), Positives = 38/67 (56%), Gaps = 1/67 (1%)
Query: 245 LFGV-GEYRAAVKALEEAIFIKPDYADAHCDLASALHAMGEDERAIEVFQKAIDLKPGHV 303
LF + GEY AV A+ ++P+ L + L + E A+ +++A++L+PG++
Sbjct: 186 LFNLSGEYDKAVDCFTAALSVRPNDYLLWNKLGATLANGNQSEEAVAAYRRALELQPGYI 245
Query: 304 DALYNLG 310
+ YNLG
Sbjct: 246 RSRYNLG 252
Score = 32.3 bits (72), Expect = 0.77, Method: Compositional matrix adjust.
Identities = 21/99 (21%), Positives = 43/99 (43%)
Query: 201 PQIYVNLGIALEGEGMVLSACEYYRESAILCPTHFRALKLLGSALFGVGEYRAAVKALEE 260
P + LG+ G A + + + + P + LG+ L + AV A
Sbjct: 177 PDVQCGLGVLFNLSGEYDKAVDCFTAALSVRPNDYLLWNKLGATLANGNQSEEAVAAYRR 236
Query: 261 AIFIKPDYADAHCDLASALHAMGEDERAIEVFQKAIDLK 299
A+ ++P Y + +L + +G A+E F +A++++
Sbjct: 237 ALELQPGYIRSRYNLGISCINLGAHREAVEHFLEALNMQ 275
Score = 30.0 bits (66), Expect = 4.6, Method: Compositional matrix adjust.
Identities = 15/46 (32%), Positives = 24/46 (52%)
Query: 131 IGRVLYEHQLFKEALVSFKRACELQPTDVRPHFRAGNCLYVLGRYR 176
+G L +EA+ +++RA ELQP +R + G LG +R
Sbjct: 217 LGATLANGNQSEEAVAAYRRALELQPGYIRSRYNLGISCINLGAHR 262
>pdb|4EQF|A Chain A, Trip8b-1a#206-567 Interacting With The Carboxy-Terminal
Seven Residues Of Hcn2
Length = 365
Score = 41.6 bits (96), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 20/70 (28%), Positives = 36/70 (51%)
Query: 241 LGSALFGVGEYRAAVKALEEAIFIKPDYADAHCDLASALHAMGEDERAIEVFQKAIDLKP 300
LG GE+ A+ A A+ ++P+ L + L E A+E + +A++++P
Sbjct: 219 LGVLFHLSGEFNRAIDAFNAALTVRPEDYSLWNRLGATLANGDRSEEAVEAYTRALEIQP 278
Query: 301 GHVDALYNLG 310
G + + YNLG
Sbjct: 279 GFIRSRYNLG 288
Score = 30.8 bits (68), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 24/91 (26%), Positives = 34/91 (37%)
Query: 121 REEAFDGHMAIGRVLYEHQLFKEALVSFKRACELQPTDVRPHFRAGNCLYVLGRYRXXXX 180
R E + +G L +EA+ ++ RA E+QP +R + G LG YR
Sbjct: 243 RPEDYSLWNRLGATLANGDRSEEAVEAYTRALEIQPGFIRSRYNLGISCINLGAYREAVS 302
Query: 181 XXXXXXXXXXTGGNQWAYLLPQIYVNLGIAL 211
NQ P I N+ AL
Sbjct: 303 NFLTALSLQRKSRNQQQVPHPAISGNIWAAL 333
>pdb|3R9A|B Chain B, Human Alanine-Glyoxylate Aminotransferase In Complex With
The Tpr Domain Of Human Pex5p
pdb|3R9A|D Chain D, Human Alanine-Glyoxylate Aminotransferase In Complex With
The Tpr Domain Of Human Pex5p
Length = 328
Score = 41.6 bits (96), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 21/67 (31%), Positives = 38/67 (56%), Gaps = 1/67 (1%)
Query: 245 LFGV-GEYRAAVKALEEAIFIKPDYADAHCDLASALHAMGEDERAIEVFQKAIDLKPGHV 303
LF + GEY AV A+ ++P+ L + L + E A+ +++A++L+PG++
Sbjct: 186 LFNLSGEYDKAVDCFTAALSVRPNDYLLWNKLGATLANGNQSEEAVAAYRRALELQPGYI 245
Query: 304 DALYNLG 310
+ YNLG
Sbjct: 246 RSRYNLG 252
Score = 32.3 bits (72), Expect = 0.84, Method: Compositional matrix adjust.
Identities = 21/99 (21%), Positives = 43/99 (43%)
Query: 201 PQIYVNLGIALEGEGMVLSACEYYRESAILCPTHFRALKLLGSALFGVGEYRAAVKALEE 260
P + LG+ G A + + + + P + LG+ L + AV A
Sbjct: 177 PDVQCGLGVLFNLSGEYDKAVDCFTAALSVRPNDYLLWNKLGATLANGNQSEEAVAAYRR 236
Query: 261 AIFIKPDYADAHCDLASALHAMGEDERAIEVFQKAIDLK 299
A+ ++P Y + +L + +G A+E F +A++++
Sbjct: 237 ALELQPGYIRSRYNLGISCINLGAHREAVEHFLEALNMQ 275
Score = 30.0 bits (66), Expect = 4.4, Method: Compositional matrix adjust.
Identities = 15/46 (32%), Positives = 24/46 (52%)
Query: 131 IGRVLYEHQLFKEALVSFKRACELQPTDVRPHFRAGNCLYVLGRYR 176
+G L +EA+ +++RA ELQP +R + G LG +R
Sbjct: 217 LGATLANGNQSEEAVAAYRRALELQPGYIRSRYNLGISCINLGAHR 262
>pdb|2C0L|A Chain A, Tpr Domain Of Human Pex5p In Complex With Human Mscp2
Length = 305
Score = 41.2 bits (95), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 21/67 (31%), Positives = 38/67 (56%), Gaps = 1/67 (1%)
Query: 245 LFGV-GEYRAAVKALEEAIFIKPDYADAHCDLASALHAMGEDERAIEVFQKAIDLKPGHV 303
LF + GEY AV A+ ++P+ L + L + E A+ +++A++L+PG++
Sbjct: 163 LFNLSGEYDKAVDCFTAALSVRPNDYLLWNKLGATLANGNQSEEAVAAYRRALELQPGYI 222
Query: 304 DALYNLG 310
+ YNLG
Sbjct: 223 RSRYNLG 229
Score = 32.3 bits (72), Expect = 0.96, Method: Compositional matrix adjust.
Identities = 21/99 (21%), Positives = 43/99 (43%)
Query: 201 PQIYVNLGIALEGEGMVLSACEYYRESAILCPTHFRALKLLGSALFGVGEYRAAVKALEE 260
P + LG+ G A + + + + P + LG+ L + AV A
Sbjct: 154 PDVQCGLGVLFNLSGEYDKAVDCFTAALSVRPNDYLLWNKLGATLANGNQSEEAVAAYRR 213
Query: 261 AIFIKPDYADAHCDLASALHAMGEDERAIEVFQKAIDLK 299
A+ ++P Y + +L + +G A+E F +A++++
Sbjct: 214 ALELQPGYIRSRYNLGISCINLGAHREAVEHFLEALNMQ 252
Score = 29.6 bits (65), Expect = 5.1, Method: Compositional matrix adjust.
Identities = 15/46 (32%), Positives = 24/46 (52%)
Query: 131 IGRVLYEHQLFKEALVSFKRACELQPTDVRPHFRAGNCLYVLGRYR 176
+G L +EA+ +++RA ELQP +R + G LG +R
Sbjct: 194 LGATLANGNQSEEAVAAYRRALELQPGYIRSRYNLGISCINLGAHR 239
>pdb|2C0M|A Chain A, Apo Form Of The Tpr Domain Of The Pex5p Receptor
pdb|2C0M|B Chain B, Apo Form Of The Tpr Domain Of The Pex5p Receptor
pdb|2C0M|C Chain C, Apo Form Of The Tpr Domain Of The Pex5p Receptor
pdb|2C0M|F Chain F, Apo Form Of The Tpr Domain Of The Pex5p Receptor
Length = 319
Score = 41.2 bits (95), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 21/67 (31%), Positives = 38/67 (56%), Gaps = 1/67 (1%)
Query: 245 LFGV-GEYRAAVKALEEAIFIKPDYADAHCDLASALHAMGEDERAIEVFQKAIDLKPGHV 303
LF + GEY AV A+ ++P+ L + L + E A+ +++A++L+PG++
Sbjct: 177 LFNLSGEYDKAVDCFTAALSVRPNDYLLWNKLGATLANGNQSEEAVAAYRRALELQPGYI 236
Query: 304 DALYNLG 310
+ YNLG
Sbjct: 237 RSRYNLG 243
Score = 32.3 bits (72), Expect = 0.81, Method: Compositional matrix adjust.
Identities = 21/99 (21%), Positives = 43/99 (43%)
Query: 201 PQIYVNLGIALEGEGMVLSACEYYRESAILCPTHFRALKLLGSALFGVGEYRAAVKALEE 260
P + LG+ G A + + + + P + LG+ L + AV A
Sbjct: 168 PDVQCGLGVLFNLSGEYDKAVDCFTAALSVRPNDYLLWNKLGATLANGNQSEEAVAAYRR 227
Query: 261 AIFIKPDYADAHCDLASALHAMGEDERAIEVFQKAIDLK 299
A+ ++P Y + +L + +G A+E F +A++++
Sbjct: 228 ALELQPGYIRSRYNLGISCINLGAHREAVEHFLEALNMQ 266
Score = 29.6 bits (65), Expect = 5.0, Method: Compositional matrix adjust.
Identities = 15/46 (32%), Positives = 24/46 (52%)
Query: 131 IGRVLYEHQLFKEALVSFKRACELQPTDVRPHFRAGNCLYVLGRYR 176
+G L +EA+ +++RA ELQP +R + G LG +R
Sbjct: 208 LGATLANGNQSEEAVAAYRRALELQPGYIRSRYNLGISCINLGAHR 253
>pdb|1FCH|A Chain A, Crystal Structure Of The Pts1 Complexed To The Tpr Region
Of Human Pex5
pdb|1FCH|B Chain B, Crystal Structure Of The Pts1 Complexed To The Tpr Region
Of Human Pex5
Length = 368
Score = 41.2 bits (95), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 21/67 (31%), Positives = 38/67 (56%), Gaps = 1/67 (1%)
Query: 245 LFGV-GEYRAAVKALEEAIFIKPDYADAHCDLASALHAMGEDERAIEVFQKAIDLKPGHV 303
LF + GEY AV A+ ++P+ L + L + E A+ +++A++L+PG++
Sbjct: 226 LFNLSGEYDKAVDCFTAALSVRPNDYLLWNKLGATLANGNQSEEAVAAYRRALELQPGYI 285
Query: 304 DALYNLG 310
+ YNLG
Sbjct: 286 RSRYNLG 292
Score = 32.7 bits (73), Expect = 0.72, Method: Compositional matrix adjust.
Identities = 21/99 (21%), Positives = 43/99 (43%)
Query: 201 PQIYVNLGIALEGEGMVLSACEYYRESAILCPTHFRALKLLGSALFGVGEYRAAVKALEE 260
P + LG+ G A + + + + P + LG+ L + AV A
Sbjct: 217 PDVQCGLGVLFNLSGEYDKAVDCFTAALSVRPNDYLLWNKLGATLANGNQSEEAVAAYRR 276
Query: 261 AIFIKPDYADAHCDLASALHAMGEDERAIEVFQKAIDLK 299
A+ ++P Y + +L + +G A+E F +A++++
Sbjct: 277 ALELQPGYIRSRYNLGISCINLGAHREAVEHFLEALNMQ 315
Score = 30.0 bits (66), Expect = 3.9, Method: Compositional matrix adjust.
Identities = 15/46 (32%), Positives = 24/46 (52%)
Query: 131 IGRVLYEHQLFKEALVSFKRACELQPTDVRPHFRAGNCLYVLGRYR 176
+G L +EA+ +++RA ELQP +R + G LG +R
Sbjct: 257 LGATLANGNQSEEAVAAYRRALELQPGYIRSRYNLGISCINLGAHR 302
>pdb|3CV0|A Chain A, Structure Of Peroxisomal Targeting Signal 1 (Pts1) Binding
Domain Of Trypanosoma Brucei Peroxin 5 (Tbpex5)complexed
To T. Brucei Phosphoglucoisomerase (Pgi) Pts1 Peptide
pdb|3CVL|A Chain A, Structure Of Peroxisomal Targeting Signal 1 (Pts1) Binding
Domain Of Trypanosoma Brucei Peroxin 5 (Tbpex5)complexed
To T. Brucei Phosphofructokinase (Pfk) Pts1 Peptide
pdb|3CVN|A Chain A, Structure Of Peroxisomal Targeting Signal 1 (Pts1) Binding
Domain Of Trypanosoma Brucei Peroxin 5 (Tbpex5)complexed
To T. Brucei Glyceraldehyde-3-Phosphate Dehydrogenase
(Gapdh) Pts1 Peptide
pdb|3CVP|A Chain A, Structure Of Peroxisomal Targeting Signal 1 (Pts1) Binding
Domain Of Trypanosoma Brucei Peroxin 5 (Tbpex5)complexed
To Pts1 Peptide (10-Skl)
Length = 327
Score = 40.8 bits (94), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 27/112 (24%), Positives = 47/112 (41%), Gaps = 7/112 (6%)
Query: 209 IALEGEGMVLSACEYYRESAILC-------PTHFRALKLLGSALFGVGEYRAAVKALEEA 261
+ ++ E +A YRE L P + LG Y +A L A
Sbjct: 139 LNVQSEDFFFAAPNEYRECRTLLHAALEMNPNDAQLHASLGVLYNLSNNYDSAAANLRRA 198
Query: 262 IFIKPDYADAHCDLASALHAMGEDERAIEVFQKAIDLKPGHVDALYNLGGLY 313
+ ++PD A L + L + A++ + +A+D+ PG+V +YN+ Y
Sbjct: 199 VELRPDDAQLWNKLGATLANGNRPQEALDAYNRALDINPGYVRVMYNMAVSY 250
>pdb|2LNI|A Chain A, Solution Nmr Structure Of Stress-Induced-Phosphoprotein 1
Sti1 From Homo Sapiens, Northeast Structural Genomics
Consortium Target Hr4403e
Length = 133
Score = 40.8 bits (94), Expect = 0.002, Method: Composition-based stats.
Identities = 19/49 (38%), Positives = 33/49 (67%)
Query: 250 EYRAAVKALEEAIFIKPDYADAHCDLASALHAMGEDERAIEVFQKAIDL 298
E++ A+K EE I ++P + + A+AL AM + +A++V+QKA+DL
Sbjct: 65 EFQLALKDCEECIQLEPTFIKGYTRKAAALEAMKDYTKAMDVYQKALDL 113
>pdb|3CVQ|A Chain A, Structure Of Peroxisomal Targeting Signal 1 (pts1) Binding
Domain Of Trypanosoma Brucei Peroxin 5 (tbpex5)complexed
To Pts1 Peptide (7- Skl)
Length = 327
Score = 40.8 bits (94), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 27/112 (24%), Positives = 47/112 (41%), Gaps = 7/112 (6%)
Query: 209 IALEGEGMVLSACEYYRESAILC-------PTHFRALKLLGSALFGVGEYRAAVKALEEA 261
+ ++ E +A YRE L P + LG Y +A L A
Sbjct: 139 LNVQSEDFFFAAPNEYRECRTLLHAALEMNPNDAQLHASLGVLYNLSNNYDSAAANLRRA 198
Query: 262 IFIKPDYADAHCDLASALHAMGEDERAIEVFQKAIDLKPGHVDALYNLGGLY 313
+ ++PD A L + L + A++ + +A+D+ PG+V +YN+ Y
Sbjct: 199 VELRPDDAQLWNKLGATLANGNRPQEALDAYNRALDINPGYVRVMYNMAVSY 250
>pdb|3LCA|A Chain A, Structure Of Tom71 Complexed With Hsp70 Ssa1 C Terminal
Tail Indicating Conformational Plasticity
Length = 533
Score = 38.1 bits (87), Expect = 0.018, Method: Compositional matrix adjust.
Identities = 23/81 (28%), Positives = 42/81 (51%), Gaps = 4/81 (4%)
Query: 230 LCPTHFRA----LKLLGSALFGVGEYRAAVKALEEAIFIKPDYADAHCDLASALHAMGED 285
L P+ +A LK G+ F + A+K + AI + P+ + ++++ + G+
Sbjct: 12 LSPSQRQAYAVQLKNRGNHFFTAKNFNEAIKYYQYAIELDPNEPVFYSNISACYISTGDL 71
Query: 286 ERAIEVFQKAIDLKPGHVDAL 306
E+ IE KA+++KP H AL
Sbjct: 72 EKVIEFTTKALEIKPDHSKAL 92
Score = 30.0 bits (66), Expect = 4.1, Method: Compositional matrix adjust.
Identities = 17/57 (29%), Positives = 29/57 (50%), Gaps = 1/57 (1%)
Query: 258 LEEAIFIKPDYADAHCDLASALHAMGEDERAIEVFQKAIDLKPGHVDALYNLGGLYM 314
L+E+I + P +++ LA L + + FQKA+DL P + Y+ G +Y
Sbjct: 262 LQESINLHPT-PNSYIFLALTLADKENSQEFFKFFQKAVDLNPEYPPTYYHRGQMYF 317
>pdb|3FP2|A Chain A, Crystal Structure Of Tom71 Complexed With Hsp82 C-Terminal
Fragment
pdb|3FP3|A Chain A, Crystal Structure Of Tom71
pdb|3FP4|A Chain A, Crystal Structure Of Tom71 Complexed With Ssa1 C-Terminal
Fragment
Length = 537
Score = 37.7 bits (86), Expect = 0.018, Method: Compositional matrix adjust.
Identities = 23/81 (28%), Positives = 42/81 (51%), Gaps = 4/81 (4%)
Query: 230 LCPTHFRA----LKLLGSALFGVGEYRAAVKALEEAIFIKPDYADAHCDLASALHAMGED 285
L P+ +A LK G+ F + A+K + AI + P+ + ++++ + G+
Sbjct: 16 LSPSQRQAYAVQLKNRGNHFFTAKNFNEAIKYYQYAIELDPNEPVFYSNISACYISTGDL 75
Query: 286 ERAIEVFQKAIDLKPGHVDAL 306
E+ IE KA+++KP H AL
Sbjct: 76 EKVIEFTTKALEIKPDHSKAL 96
Score = 30.0 bits (66), Expect = 4.3, Method: Compositional matrix adjust.
Identities = 17/57 (29%), Positives = 29/57 (50%), Gaps = 1/57 (1%)
Query: 258 LEEAIFIKPDYADAHCDLASALHAMGEDERAIEVFQKAIDLKPGHVDALYNLGGLYM 314
L+E+I + P +++ LA L + + FQKA+DL P + Y+ G +Y
Sbjct: 266 LQESINLHPT-PNSYIFLALTLADKENSQEFFKFFQKAVDLNPEYPPTYYHRGQMYF 321
>pdb|2VYI|A Chain A, Crystal Structure Of The Tpr Domain Of Human Sgt
pdb|2VYI|B Chain B, Crystal Structure Of The Tpr Domain Of Human Sgt
Length = 131
Score = 37.4 bits (85), Expect = 0.024, Method: Compositional matrix adjust.
Identities = 23/82 (28%), Positives = 42/82 (51%)
Query: 219 SACEYYRESAILCPTHFRALKLLGSALFGVGEYRAAVKALEEAIFIKPDYADAHCDLASA 278
+A +Y ++ L P + +A +G Y AV+ E AI I P Y+ A+ + A
Sbjct: 30 AAVHFYGKAIELNPANAVYFCNRAAAYSKLGNYAGAVQDCERAICIDPAYSKAYGRMGLA 89
Query: 279 LHAMGEDERAIEVFQKAIDLKP 300
L ++ + A+ ++KA++L P
Sbjct: 90 LSSLNKHVEAVAYYKKALELDP 111
>pdb|2Q7F|A Chain A, Crystal Structure Of Yrrb: A Tpr Protein With An Unusual
Peptide- Binding Site
pdb|2Q7F|B Chain B, Crystal Structure Of Yrrb: A Tpr Protein With An Unusual
Peptide- Binding Site
Length = 243
Score = 37.4 bits (85), Expect = 0.027, Method: Compositional matrix adjust.
Identities = 28/108 (25%), Positives = 45/108 (41%), Gaps = 7/108 (6%)
Query: 213 GEGMVLSACEYYRESAILCPTHFRA-------LKLLGSALFGVGEYRAAVKALEEAIFIK 265
G G V E Y+E+ + RA +LG+ L + + + A+ L+ A+ +
Sbjct: 96 GAGNVYVVKEMYKEAKDMFEKALRAGMENGDLFYMLGTVLVKLEQPKLALPYLQRAVELN 155
Query: 266 PDYADAHCDLASALHAMGEDERAIEVFQKAIDLKPGHVDALYNLGGLY 313
+ +A L G + A+ F + PGH DA YN G Y
Sbjct: 156 ENDTEARFQFGMCLANEGMLDEALSQFAAVTEQDPGHADAFYNAGVTY 203
Score = 36.2 bits (82), Expect = 0.059, Method: Compositional matrix adjust.
Identities = 42/165 (25%), Positives = 67/165 (40%), Gaps = 10/165 (6%)
Query: 144 ALVSFKRACELQPTDVRPHFRAGNCLYVLGRYRXXXXXXXXXXXXXXTGGNQWAYLLPQI 203
AL + +A EL + ++ AGN V Y+ G+ + Y+L +
Sbjct: 76 ALAFYDKALELDSSAATAYYGAGNVYVVKEMYKEAKDMFEKALRAGMENGDLF-YMLGTV 134
Query: 204 YVNLGIALEGEGMVLSACEYYRESAILCPTHFRALKLLGSALFGVGEYRAAVKALEEAIF 263
V L E + L Y + + L A G L G A+
Sbjct: 135 LVKL----EQPKLALP---YLQRAVELNENDTEARFQFGMCLANEGMLDEALSQFAAVTE 187
Query: 264 IKPDYADAHCDLASALHAMGED-ERAIEVFQKAIDLKPGHVDALY 307
P +ADA + A +A E+ E+A+E+ KAID++P H+ AL+
Sbjct: 188 QDPGHADAFYN-AGVTYAYKENREKALEMLDKAIDIQPDHMLALH 231
Score = 34.7 bits (78), Expect = 0.17, Method: Compositional matrix adjust.
Identities = 20/66 (30%), Positives = 35/66 (53%)
Query: 249 GEYRAAVKALEEAIFIKPDYADAHCDLASALHAMGEDERAIEVFQKAIDLKPGHVDALYN 308
G+Y A +A +AI + A + + A+ L ++ E ERA+ + KA++L A Y
Sbjct: 37 GDYEKAAEAFTKAIEENKEDAIPYINFANLLSSVNELERALAFYDKALELDSSAATAYYG 96
Query: 309 LGGLYM 314
G +Y+
Sbjct: 97 AGNVYV 102
>pdb|3ASG|A Chain A, Mama D159k Mutant 2
pdb|3ASG|B Chain B, Mama D159k Mutant 2
pdb|3ASH|A Chain A, Mama D159k Mutant 1
pdb|3ASH|B Chain B, Mama D159k Mutant 1
Length = 186
Score = 36.6 bits (83), Expect = 0.041, Method: Compositional matrix adjust.
Identities = 32/117 (27%), Positives = 48/117 (41%), Gaps = 10/117 (8%)
Query: 194 NQWAYLLPQIY----------VNLGIALEGEGMVLSACEYYRESAILCPTHFRALKLLGS 243
+Q LL Q+Y ++LGIA G V E S P + + +LG
Sbjct: 25 SQAVMLLEQVYDADAFDVDVALHLGIAYVKTGAVDRGTELLERSLADAPDNVKVATVLGL 84
Query: 244 ALFGVGEYRAAVKALEEAIFIKPDYADAHCDLASALHAMGEDERAIEVFQKAIDLKP 300
V +Y AV L + P + L AL +G + AI+ F+ A+ L+P
Sbjct: 85 TYVQVQKYDLAVPLLIKVAEANPINFNVRFRLGVALKNLGRFDEAIDSFKIALGLRP 141
Score = 36.6 bits (83), Expect = 0.047, Method: Compositional matrix adjust.
Identities = 21/70 (30%), Positives = 36/70 (51%)
Query: 232 PTHFRALKLLGSALFGVGEYRAAVKALEEAIFIKPDYADAHCDLASALHAMGEDERAIEV 291
P +F LG AL +G + A+ + + A+ ++P+ H +A + MG E A+
Sbjct: 107 PINFNVRFRLGVALKNLGRFDEAIDSFKIALGLRPNEGKVHRAIAFSYEQMGRHEEALPH 166
Query: 292 FQKAIDLKPG 301
F+KA +L G
Sbjct: 167 FKKANELDEG 176
>pdb|3AS4|A Chain A, Mama Amb-1 C2221
pdb|3AS5|A Chain A, Mama Amb-1 P212121
pdb|3AS5|B Chain B, Mama Amb-1 P212121
Length = 186
Score = 36.6 bits (83), Expect = 0.046, Method: Compositional matrix adjust.
Identities = 32/117 (27%), Positives = 48/117 (41%), Gaps = 10/117 (8%)
Query: 194 NQWAYLLPQIY----------VNLGIALEGEGMVLSACEYYRESAILCPTHFRALKLLGS 243
+Q LL Q+Y ++LGIA G V E S P + + +LG
Sbjct: 25 SQAVMLLEQVYDADAFDVDVALHLGIAYVKTGAVDRGTELLERSLADAPDNVKVATVLGL 84
Query: 244 ALFGVGEYRAAVKALEEAIFIKPDYADAHCDLASALHAMGEDERAIEVFQKAIDLKP 300
V +Y AV L + P + L AL +G + AI+ F+ A+ L+P
Sbjct: 85 TYVQVQKYDLAVPLLIKVAEANPINFNVRFRLGVALDNLGRFDEAIDSFKIALGLRP 141
Score = 36.6 bits (83), Expect = 0.051, Method: Compositional matrix adjust.
Identities = 21/70 (30%), Positives = 36/70 (51%)
Query: 232 PTHFRALKLLGSALFGVGEYRAAVKALEEAIFIKPDYADAHCDLASALHAMGEDERAIEV 291
P +F LG AL +G + A+ + + A+ ++P+ H +A + MG E A+
Sbjct: 107 PINFNVRFRLGVALDNLGRFDEAIDSFKIALGLRPNEGKVHRAIAFSYEQMGRHEEALPH 166
Query: 292 FQKAIDLKPG 301
F+KA +L G
Sbjct: 167 FKKANELDEG 176
>pdb|3ASD|A Chain A, Mama R50e Mutant
Length = 200
Score = 36.6 bits (83), Expect = 0.049, Method: Compositional matrix adjust.
Identities = 32/117 (27%), Positives = 48/117 (41%), Gaps = 10/117 (8%)
Query: 194 NQWAYLLPQIY----------VNLGIALEGEGMVLSACEYYRESAILCPTHFRALKLLGS 243
+Q LL Q+Y ++LGIA G V E S P + + +LG
Sbjct: 25 SQAVMLLEQVYDADAFDVDVALHLGIAYVKTGAVDRGTELLERSLADAPDNVKVATVLGL 84
Query: 244 ALFGVGEYRAAVKALEEAIFIKPDYADAHCDLASALHAMGEDERAIEVFQKAIDLKP 300
V +Y AV L + P + L AL +G + AI+ F+ A+ L+P
Sbjct: 85 TYVQVQKYDLAVPLLIKVAEANPINFNVRFRLGVALDNLGRFDEAIDSFKIALGLRP 141
Score = 36.2 bits (82), Expect = 0.053, Method: Compositional matrix adjust.
Identities = 21/70 (30%), Positives = 36/70 (51%)
Query: 232 PTHFRALKLLGSALFGVGEYRAAVKALEEAIFIKPDYADAHCDLASALHAMGEDERAIEV 291
P +F LG AL +G + A+ + + A+ ++P+ H +A + MG E A+
Sbjct: 107 PINFNVRFRLGVALDNLGRFDEAIDSFKIALGLRPNEGKVHRAIAFSYEQMGRHEEALPH 166
Query: 292 FQKAIDLKPG 301
F+KA +L G
Sbjct: 167 FKKANELDEG 176
>pdb|3AS8|A Chain A, Mama Msr-1 P41212
pdb|3ASF|A Chain A, Mama Msr-1 C2
pdb|3ASF|B Chain B, Mama Msr-1 C2
Length = 186
Score = 35.8 bits (81), Expect = 0.081, Method: Compositional matrix adjust.
Identities = 27/100 (27%), Positives = 43/100 (43%)
Query: 202 QIYVNLGIALEGEGMVLSACEYYRESAILCPTHFRALKLLGSALFGVGEYRAAVKALEEA 261
++ ++LGIA G V E S P + + +LG V +Y AV L +
Sbjct: 43 EVALHLGIAYVKTGAVDRGTELLERSIADAPDNIKVATVLGLTYVQVQKYDLAVPLLVKV 102
Query: 262 IFIKPDYADAHCDLASALHAMGEDERAIEVFQKAIDLKPG 301
P + L AL +G + AI+ F+ A+ L+P
Sbjct: 103 AEANPVNFNVRFRLGVALDNLGRFDEAIDSFKIALGLRPN 142
Score = 35.4 bits (80), Expect = 0.10, Method: Compositional matrix adjust.
Identities = 20/67 (29%), Positives = 35/67 (52%)
Query: 232 PTHFRALKLLGSALFGVGEYRAAVKALEEAIFIKPDYADAHCDLASALHAMGEDERAIEV 291
P +F LG AL +G + A+ + + A+ ++P+ H +A + MG E A+
Sbjct: 107 PVNFNVRFRLGVALDNLGRFDEAIDSFKIALGLRPNEGKVHRAIAYSYEQMGSHEEALPH 166
Query: 292 FQKAIDL 298
F+KA +L
Sbjct: 167 FKKANEL 173
>pdb|2L6J|A Chain A, Tah1 Complexed By Meevd
Length = 111
Score = 35.0 bits (79), Expect = 0.15, Method: Composition-based stats.
Identities = 20/64 (31%), Positives = 34/64 (53%)
Query: 233 THFRALKLLGSALFGVGEYRAAVKALEEAIFIKPDYADAHCDLASALHAMGEDERAIEVF 292
+ F K G++LF G YR AV ++ I +P + + A AL +GE +AI++
Sbjct: 2 SQFEKQKEQGNSLFKQGLYREAVHCYDQLITAQPQNPVGYSNKAMALIKLGEYTQAIQMC 61
Query: 293 QKAI 296
Q+ +
Sbjct: 62 QQGL 65
>pdb|2HO1|A Chain A, Functional Characterization Of Pseudomonas Aeruginosa Pilf
pdb|2HO1|B Chain B, Functional Characterization Of Pseudomonas Aeruginosa Pilf
Length = 252
Score = 32.0 bits (71), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 23/72 (31%), Positives = 30/72 (41%)
Query: 241 LGSALFGVGEYRAAVKALEEAIFIKPDYADAHCDLASALHAMGEDERAIEVFQKAIDLKP 300
LG G A L +A+ I P ADAH LA E + A E ++KA+
Sbjct: 43 LGLGYLQRGNTEQAKVPLRKALEIDPSSADAHAALAVVFQTEXEPKLADEEYRKALASDS 102
Query: 301 GHVDALYNLGGL 312
+ L N GG
Sbjct: 103 RNARVLNNYGGF 114
>pdb|3SF4|A Chain A, Crystal Structure Of The Complex Between The Conserved
Cell Polarity Proteins Inscuteable And Lgn
pdb|3SF4|B Chain B, Crystal Structure Of The Complex Between The Conserved
Cell Polarity Proteins Inscuteable And Lgn
pdb|3SF4|C Chain C, Crystal Structure Of The Complex Between The Conserved
Cell Polarity Proteins Inscuteable And Lgn
Length = 406
Score = 31.6 bits (70), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 26/85 (30%), Positives = 40/85 (47%), Gaps = 12/85 (14%)
Query: 241 LGSALFGVGEYRAAVK------ALEEAIFIKPDYADAHCDLASALHAMGEDERAIEVFQK 294
LG+A F + +Y A++ L I + A A +L + L +G + AI Q+
Sbjct: 53 LGNAYFYLHDYAKALEYHHHDLTLARTIGDQLGEAKASGNLGNTLKVLGNFDEAIVCCQR 112
Query: 295 AIDL------KPGHVDALYNLGGLY 313
+D+ K G ALYNLG +Y
Sbjct: 113 HLDISRELNDKVGEARALYNLGNVY 137
>pdb|2FI7|A Chain A, Crystal Structure Of Pilf : Functional Implication In The
Type 4 Pilus Biogenesis In Pseudomonas Aeruginosa
pdb|2FI7|B Chain B, Crystal Structure Of Pilf : Functional Implication In The
Type 4 Pilus Biogenesis In Pseudomonas Aeruginosa
Length = 265
Score = 31.6 bits (70), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 23/72 (31%), Positives = 30/72 (41%)
Query: 241 LGSALFGVGEYRAAVKALEEAIFIKPDYADAHCDLASALHAMGEDERAIEVFQKAIDLKP 300
LG G A L +A+ I P ADAH LA E + A E ++KA+
Sbjct: 56 LGLGYLQRGNTEQAKVPLRKALEIDPSSADAHAALAVVFQTEMEPKLADEEYRKALASDS 115
Query: 301 GHVDALYNLGGL 312
+ L N GG
Sbjct: 116 RNARVLNNYGGF 127
>pdb|1XNF|A Chain A, Crystal Structure Of E.Coli Tpr-Protein Nlpi
pdb|1XNF|B Chain B, Crystal Structure Of E.Coli Tpr-Protein Nlpi
Length = 275
Score = 31.2 bits (69), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 21/87 (24%), Positives = 37/87 (42%)
Query: 202 QIYVNLGIALEGEGMVLSACEYYRESAILCPTHFRALKLLGSALFGVGEYRAAVKALEEA 261
Q+ G+ + G+ A + ++ + P LG L G + AA +A +
Sbjct: 44 QLLYERGVLYDSLGLRALARNDFSQALAIRPDXPEVFNYLGIYLTQAGNFDAAYEAFDSV 103
Query: 262 IFIKPDYADAHCDLASALHAMGEDERA 288
+ + P Y AH + AL+ G D+ A
Sbjct: 104 LELDPTYNYAHLNRGIALYYGGRDKLA 130
>pdb|3RO2|A Chain A, Structures Of The LgnNUMA COMPLEX
Length = 338
Score = 31.2 bits (69), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 26/85 (30%), Positives = 40/85 (47%), Gaps = 12/85 (14%)
Query: 241 LGSALFGVGEYRAAVK------ALEEAIFIKPDYADAHCDLASALHAMGEDERAIEVFQK 294
LG+A F + +Y A++ L I + A A +L + L +G + AI Q+
Sbjct: 49 LGNAYFYLHDYAKALEYHHHDLTLARTIGDQLGEAKASGNLGNTLKVLGNFDEAIVCCQR 108
Query: 295 AIDL------KPGHVDALYNLGGLY 313
+D+ K G ALYNLG +Y
Sbjct: 109 HLDISRELNDKVGEARALYNLGNVY 133
>pdb|4G2V|A Chain A, Structure Complex Of Lgn Binding With Frmpd1
Length = 340
Score = 31.2 bits (69), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 26/85 (30%), Positives = 40/85 (47%), Gaps = 12/85 (14%)
Query: 241 LGSALFGVGEYRAAVK------ALEEAIFIKPDYADAHCDLASALHAMGEDERAIEVFQK 294
LG+A F + +Y A++ L I + A A +L + L +G + AI Q+
Sbjct: 51 LGNAYFYLHDYAKALEYHHHDLTLARTIGDQLGEAKASGNLGNTLKVLGNFDEAIVCCQR 110
Query: 295 AIDL------KPGHVDALYNLGGLY 313
+D+ K G ALYNLG +Y
Sbjct: 111 HLDISRELNDKVGEARALYNLGNVY 135
>pdb|2R5S|A Chain A, The Crystal Structure Of A Domain Of Protein Vp0806
(Unknown Function) From Vibrio Parahaemolyticus Rimd
2210633
pdb|2R5S|B Chain B, The Crystal Structure Of A Domain Of Protein Vp0806
(Unknown Function) From Vibrio Parahaemolyticus Rimd
2210633
Length = 176
Score = 30.8 bits (68), Expect = 2.7, Method: Composition-based stats.
Identities = 15/51 (29%), Positives = 26/51 (50%)
Query: 255 VKALEEAIFIKPDYADAHCDLASALHAMGEDERAIEVFQKAIDLKPGHVDA 305
+K LE+ + PD + C+LA + +G DE A+E+ + + G D
Sbjct: 94 LKRLEQELAANPDNFELACELAVQYNQVGRDEEALELLWNILKVNLGAQDG 144
>pdb|3NSL|A Chain A, Crystal Structure Of S100a3 C30a+c68a Double Mutant
Expressed In Insect Cell
pdb|3NSL|F Chain F, Crystal Structure Of S100a3 C30a+c68a Double Mutant
Expressed In Insect Cell
pdb|3NSL|C Chain C, Crystal Structure Of S100a3 C30a+c68a Double Mutant
Expressed In Insect Cell
pdb|3NSL|B Chain B, Crystal Structure Of S100a3 C30a+c68a Double Mutant
Expressed In Insect Cell
pdb|3NSL|E Chain E, Crystal Structure Of S100a3 C30a+c68a Double Mutant
Expressed In Insect Cell
pdb|3NSL|D Chain D, Crystal Structure Of S100a3 C30a+c68a Double Mutant
Expressed In Insect Cell
Length = 101
Score = 30.0 bits (66), Expect = 4.4, Method: Composition-based stats.
Identities = 20/68 (29%), Positives = 33/68 (48%), Gaps = 3/68 (4%)
Query: 424 YSGGGGPQKSIRKPNLEEILRKFLHFLKPETFQGAVKAINERILSVLDETGSARVDLGMF 483
Y+G G + + + L+E+L+K L P F+ + + +SVLD A VD +
Sbjct: 19 YAGRCGDKYKLAQAELKELLQKELATWTPTEFR---ECDYNKFMSVLDTNKDAEVDFVEY 75
Query: 484 YAILAPIC 491
LA +C
Sbjct: 76 VRSLACLC 83
>pdb|2GW1|A Chain A, Crystal Structure Of The Yeast Tom70
pdb|2GW1|B Chain B, Crystal Structure Of The Yeast Tom70
Length = 514
Score = 30.0 bits (66), Expect = 4.8, Method: Compositional matrix adjust.
Identities = 20/70 (28%), Positives = 39/70 (55%), Gaps = 1/70 (1%)
Query: 237 ALKLLGSALFGVGEYRAAVKALEEAIFIKPDYADAHCDLASALHAMGEDERAIEVFQKAI 296
ALK G+ F +Y A+K A+ +K D + +L++ ++G+ ++ +E+ KA+
Sbjct: 8 ALKDKGNQFFRNKKYDDAIKYYNWALELKEDPV-FYSNLSACYVSVGDLKKVVEMSTKAL 66
Query: 297 DLKPGHVDAL 306
+LKP + L
Sbjct: 67 ELKPDYSKVL 76
>pdb|3K9I|A Chain A, Crystal Structure Of Putative Protein Binding Protein
(np_241345.1) From Bacillus Halodurans At 2.71 A
Resolution
Length = 117
Score = 29.6 bits (65), Expect = 5.6, Method: Composition-based stats.
Identities = 17/56 (30%), Positives = 26/56 (46%)
Query: 241 LGSALFGVGEYRAAVKALEEAIFIKPDYADAHCDLASALHAMGEDERAIEVFQKAI 296
LGS +GEYR A L + P++ A L+ +G E+ +E+ K I
Sbjct: 33 LGSTFRTLGEYRKAEAVLANGVKQFPNHQALRVFYAXVLYNLGRYEQGVELLLKII 88
>pdb|1ELW|A Chain A, Crystal Structure Of The Tpr1 Domain Of Hop In Complex
With A Hsc70 Peptide
pdb|1ELW|B Chain B, Crystal Structure Of The Tpr1 Domain Of Hop In Complex
With A Hsc70 Peptide
Length = 118
Score = 29.6 bits (65), Expect = 5.9, Method: Compositional matrix adjust.
Identities = 19/63 (30%), Positives = 31/63 (49%)
Query: 238 LKLLGSALFGVGEYRAAVKALEEAIFIKPDYADAHCDLASALHAMGEDERAIEVFQKAID 297
LK G+ VG A++ EAI + P + + ++A G+ ++A E K +D
Sbjct: 7 LKEKGNKALSVGNIDDALQCYSEAIKLDPHNHVLYSNRSAAYAKKGDYQKAYEDGCKTVD 66
Query: 298 LKP 300
LKP
Sbjct: 67 LKP 69
>pdb|4A1S|A Chain A, Crystallographic Structure Of The Pins:insc Complex
pdb|4A1S|B Chain B, Crystallographic Structure Of The Pins:insc Complex
Length = 411
Score = 29.6 bits (65), Expect = 6.1, Method: Compositional matrix adjust.
Identities = 29/112 (25%), Positives = 57/112 (50%), Gaps = 18/112 (16%)
Query: 220 ACEYYRESAILC------PTHFRALKLLGSALFGVGEYRAAVKALEEAIFIKPDYAD--- 270
A E+Y+E+ L RA LG+ + +G+++AA++ +E + I ++ D
Sbjct: 202 AVEFYQENLKLMRDLGDRGAQGRACGNLGNTYYLLGDFQAAIEHHQERLRIAREFGDRAA 261
Query: 271 ---AHCDLASALHAMGEDERAIEVFQK----AIDLKPGHVDA--LYNLGGLY 313
A+ +L ++ +G+ E A E +++ A++L V+A Y+LG Y
Sbjct: 262 ERRANSNLGNSHIFLGQFEDAAEHYKRTLALAVELGEREVEAQSCYSLGNTY 313
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.319 0.135 0.400
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 18,332,187
Number of Sequences: 62578
Number of extensions: 728760
Number of successful extensions: 1632
Number of sequences better than 100.0: 46
Number of HSP's better than 100.0 without gapping: 35
Number of HSP's successfully gapped in prelim test: 11
Number of HSP's that attempted gapping in prelim test: 1457
Number of HSP's gapped (non-prelim): 162
length of query: 660
length of database: 14,973,337
effective HSP length: 105
effective length of query: 555
effective length of database: 8,402,647
effective search space: 4663469085
effective search space used: 4663469085
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 55 (25.8 bits)