Query 006120
Match_columns 660
No_of_seqs 847 out of 4215
Neff 9.2
Searched_HMMs 46136
Date Thu Mar 28 18:38:31 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/006120.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/006120hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG4626 O-linked N-acetylgluco 100.0 2.3E-51 5.1E-56 419.5 22.1 551 18-605 107-762 (966)
2 KOG4626 O-linked N-acetylgluco 100.0 1.3E-31 2.7E-36 275.2 24.8 277 21-337 212-488 (966)
3 TIGR00990 3a0801s09 mitochondr 99.9 5.4E-23 1.2E-27 233.0 36.7 191 103-301 309-499 (615)
4 PRK15174 Vi polysaccharide exp 99.9 1.2E-22 2.6E-27 229.8 33.6 284 15-338 64-351 (656)
5 TIGR00990 3a0801s09 mitochondr 99.9 6.1E-22 1.3E-26 224.4 38.0 241 84-337 327-574 (615)
6 PRK15174 Vi polysaccharide exp 99.9 2.5E-21 5.5E-26 219.1 36.2 297 16-353 99-403 (656)
7 KOG1126 DNA-binding cell divis 99.9 3.2E-22 7E-27 210.0 22.8 207 124-340 420-626 (638)
8 PRK11447 cellulose synthase su 99.9 1.3E-20 2.9E-25 227.2 38.4 301 19-337 295-703 (1157)
9 PRK11788 tetratricopeptide rep 99.9 1.4E-20 2.9E-25 202.1 33.6 283 24-339 32-316 (389)
10 TIGR02917 PEP_TPR_lipo putativ 99.9 3.4E-20 7.3E-25 219.9 37.6 296 21-337 357-667 (899)
11 TIGR02917 PEP_TPR_lipo putativ 99.9 2.2E-20 4.8E-25 221.4 34.8 234 90-337 569-802 (899)
12 KOG1126 DNA-binding cell divis 99.9 8.5E-22 1.8E-26 206.8 19.3 227 100-339 331-591 (638)
13 PRK11447 cellulose synthase su 99.9 3.6E-20 7.8E-25 223.5 34.2 277 32-337 274-635 (1157)
14 PRK09782 bacteriophage N4 rece 99.9 4.7E-20 1E-24 213.5 32.0 273 23-339 471-745 (987)
15 KOG1155 Anaphase-promoting com 99.9 1.9E-19 4.2E-24 181.0 31.7 317 16-353 153-519 (559)
16 PRK09782 bacteriophage N4 rece 99.9 2.6E-19 5.6E-24 207.3 36.5 308 21-347 370-720 (987)
17 KOG1155 Anaphase-promoting com 99.9 7E-19 1.5E-23 177.0 31.6 253 88-352 262-552 (559)
18 PRK11788 tetratricopeptide rep 99.9 6.3E-19 1.4E-23 189.1 31.0 279 20-333 62-346 (389)
19 COG3914 Spy Predicted O-linked 99.8 2E-20 4.3E-25 194.0 17.9 282 215-533 45-345 (620)
20 PRK11189 lipoprotein NlpI; Pro 99.8 6.6E-18 1.4E-22 173.2 29.9 237 102-353 40-286 (296)
21 TIGR02521 type_IV_pilW type IV 99.8 7.3E-18 1.6E-22 166.1 28.1 206 120-335 26-233 (234)
22 PRK10049 pgaA outer membrane p 99.8 2.8E-17 6.1E-22 190.0 36.4 317 17-348 107-470 (765)
23 KOG0547 Translocase of outer m 99.8 1.8E-18 4E-23 174.9 21.7 238 87-337 325-569 (606)
24 PRK12370 invasion protein regu 99.8 1E-17 2.3E-22 186.7 28.2 219 101-334 274-502 (553)
25 KOG1173 Anaphase-promoting com 99.8 6.2E-18 1.3E-22 174.4 23.1 208 125-342 312-526 (611)
26 COG3063 PilF Tfp pilus assembl 99.8 3E-17 6.5E-22 152.2 25.3 210 120-339 30-241 (250)
27 KOG0547 Translocase of outer m 99.8 2.2E-17 4.8E-22 167.2 26.4 219 125-352 326-551 (606)
28 PRK10049 pgaA outer membrane p 99.8 8.2E-17 1.8E-21 186.2 34.0 296 22-338 44-426 (765)
29 PF13429 TPR_15: Tetratricopep 99.8 7.1E-19 1.5E-23 179.6 14.0 266 31-334 12-277 (280)
30 KOG1129 TPR repeat-containing 99.8 7.7E-18 1.7E-22 162.4 18.1 231 93-337 228-461 (478)
31 COG2956 Predicted N-acetylgluc 99.8 3.7E-16 8.1E-21 151.1 29.6 301 6-339 14-316 (389)
32 KOG0624 dsRNA-activated protei 99.8 2.1E-16 4.5E-21 153.5 27.1 317 19-353 30-390 (504)
33 PRK12370 invasion protein regu 99.8 7.6E-17 1.7E-21 179.8 27.6 200 128-337 261-473 (553)
34 KOG0548 Molecular co-chaperone 99.8 8.2E-16 1.8E-20 158.4 31.6 272 126-420 225-523 (539)
35 KOG1125 TPR repeat-containing 99.8 1.6E-17 3.5E-22 172.2 19.1 199 129-337 289-530 (579)
36 KOG1840 Kinesin light chain [C 99.8 2.8E-16 6.1E-21 167.5 28.6 252 82-335 193-480 (508)
37 PF13429 TPR_15: Tetratricopep 99.8 2.4E-18 5.2E-23 175.8 10.2 243 92-347 12-257 (280)
38 TIGR02521 type_IV_pilW type IV 99.8 6.2E-16 1.3E-20 152.3 26.9 206 86-300 29-234 (234)
39 KOG1129 TPR repeat-containing 99.7 1.9E-17 4E-22 159.7 15.0 250 24-312 220-472 (478)
40 KOG2002 TPR-containing nuclear 99.7 1.8E-15 3.8E-20 165.1 31.5 317 17-345 154-571 (1018)
41 KOG1840 Kinesin light chain [C 99.7 2.4E-15 5.2E-20 160.5 30.0 265 15-298 187-479 (508)
42 COG3063 PilF Tfp pilus assembl 99.7 1.2E-15 2.5E-20 141.7 23.9 213 84-305 31-243 (250)
43 KOG1125 TPR repeat-containing 99.7 4E-16 8.6E-21 162.0 20.6 225 93-322 290-559 (579)
44 TIGR00540 hemY_coli hemY prote 99.7 9.8E-15 2.1E-19 157.0 32.2 279 31-344 88-376 (409)
45 PLN02789 farnesyltranstransfer 99.7 3.9E-15 8.5E-20 152.4 27.1 224 82-316 31-268 (320)
46 KOG2003 TPR repeat-containing 99.7 2.2E-15 4.8E-20 150.9 23.8 223 102-337 470-692 (840)
47 KOG1173 Anaphase-promoting com 99.7 1.5E-15 3.2E-20 157.0 23.0 273 88-400 244-524 (611)
48 PRK11189 lipoprotein NlpI; Pro 99.7 3.1E-15 6.7E-20 153.4 25.6 214 88-316 64-284 (296)
49 KOG2002 TPR-containing nuclear 99.7 4.3E-15 9.3E-20 162.1 27.2 231 92-333 203-441 (1018)
50 PRK10747 putative protoheme IX 99.7 6.5E-14 1.4E-18 149.9 32.7 242 92-340 122-363 (398)
51 PLN02789 farnesyltranstransfer 99.7 1.8E-14 4E-19 147.5 26.6 209 134-352 46-266 (320)
52 KOG1174 Anaphase-promoting com 99.7 1.6E-14 3.6E-19 143.6 24.9 280 20-340 225-506 (564)
53 KOG2003 TPR repeat-containing 99.7 5.8E-15 1.3E-19 147.9 21.7 285 24-323 416-714 (840)
54 KOG4162 Predicted calmodulin-b 99.7 7.7E-14 1.7E-18 149.2 31.2 298 24-337 390-786 (799)
55 KOG0550 Molecular chaperone (D 99.7 4.4E-15 9.5E-20 148.0 20.0 281 32-352 54-368 (486)
56 TIGR00540 hemY_coli hemY prote 99.7 5.1E-14 1.1E-18 151.5 29.3 277 22-334 113-399 (409)
57 KOG2076 RNA polymerase III tra 99.7 5.3E-14 1.2E-18 152.8 28.5 238 91-333 176-511 (895)
58 COG2956 Predicted N-acetylgluc 99.7 1.2E-13 2.7E-18 133.8 27.3 244 95-352 42-296 (389)
59 KOG1174 Anaphase-promoting com 99.6 5.3E-14 1.1E-18 140.1 24.2 302 98-416 206-519 (564)
60 KOG0624 dsRNA-activated protei 99.6 2.8E-13 6E-18 132.0 28.5 210 120-339 33-257 (504)
61 PRK14574 hmsH outer membrane p 99.6 6.4E-13 1.4E-17 151.6 35.1 304 20-337 27-482 (822)
62 TIGR03302 OM_YfiO outer membra 99.6 9.2E-14 2E-18 138.1 22.8 194 119-336 27-234 (235)
63 PRK10747 putative protoheme IX 99.6 8.1E-13 1.8E-17 141.5 30.8 226 93-335 158-391 (398)
64 KOG0495 HAT repeat protein [RN 99.6 5.2E-13 1.1E-17 139.8 27.9 245 82-340 544-788 (913)
65 KOG2076 RNA polymerase III tra 99.6 6.3E-13 1.4E-17 144.6 28.9 251 88-351 139-496 (895)
66 PRK15359 type III secretion sy 99.6 6.4E-14 1.4E-18 127.3 16.8 127 179-316 13-139 (144)
67 TIGR03302 OM_YfiO outer membra 99.6 2.5E-13 5.5E-18 135.0 22.2 175 155-353 29-215 (235)
68 KOG0495 HAT repeat protein [RN 99.6 2E-12 4.3E-17 135.6 28.8 222 102-337 598-849 (913)
69 KOG0550 Molecular chaperone (D 99.6 1.8E-13 3.9E-18 136.7 17.8 280 21-313 77-364 (486)
70 PRK15359 type III secretion sy 99.5 1E-13 2.2E-18 125.9 14.5 127 145-282 13-139 (144)
71 PRK10370 formate-dependent nit 99.5 1.7E-12 3.7E-17 124.4 21.0 123 214-338 52-177 (198)
72 KOG0548 Molecular co-chaperone 99.5 2.6E-12 5.5E-17 132.9 23.4 186 127-330 300-485 (539)
73 PF13844 Glyco_transf_41: Glyc 99.5 2.6E-16 5.6E-21 165.5 -6.6 120 446-577 2-127 (468)
74 COG5010 TadD Flp pilus assembl 99.5 2.6E-12 5.7E-17 122.3 20.7 182 142-334 50-231 (257)
75 KOG1130 Predicted G-alpha GTPa 99.5 2.1E-13 4.5E-18 135.7 13.1 275 34-335 24-345 (639)
76 cd05804 StaR_like StaR_like; a 99.5 3.8E-12 8.3E-17 134.8 23.3 204 122-336 3-217 (355)
77 PRK14574 hmsH outer membrane p 99.5 5.2E-12 1.1E-16 144.2 25.7 199 122-331 31-229 (822)
78 KOG4162 Predicted calmodulin-b 99.5 9.5E-12 2.1E-16 133.4 24.5 250 20-303 471-788 (799)
79 cd05804 StaR_like StaR_like; a 99.5 6.5E-12 1.4E-16 133.0 23.5 210 85-300 3-217 (355)
80 PRK10370 formate-dependent nit 99.5 4.7E-12 1E-16 121.4 19.5 124 172-303 52-178 (198)
81 PRK15179 Vi polysaccharide bio 99.5 4.3E-12 9.4E-17 142.3 22.0 165 96-268 57-221 (694)
82 PRK15179 Vi polysaccharide bio 99.5 7.7E-12 1.7E-16 140.3 23.3 154 147-308 74-227 (694)
83 PLN03218 maturation of RBCL 1; 99.4 1.7E-10 3.6E-15 135.5 34.6 293 24-335 469-784 (1060)
84 KOG1130 Predicted G-alpha GTPa 99.4 1.4E-12 3E-17 129.9 14.0 239 95-337 24-307 (639)
85 KOG1128 Uncharacterized conser 99.4 4.5E-12 9.7E-17 135.2 17.9 226 84-337 394-619 (777)
86 PLN03081 pentatricopeptide (PP 99.4 3.3E-11 7E-16 139.1 26.1 229 90-334 327-557 (697)
87 PLN03218 maturation of RBCL 1; 99.4 4.8E-10 1E-14 131.7 35.9 292 25-338 435-754 (1060)
88 KOG3060 Uncharacterized conser 99.4 1.1E-10 2.4E-15 110.1 24.0 171 130-308 57-230 (289)
89 PF12569 NARP1: NMDA receptor- 99.4 1.5E-10 3.3E-15 125.4 28.8 244 87-335 3-335 (517)
90 KOG1127 TPR repeat-containing 99.4 5.9E-11 1.3E-15 130.0 23.1 283 32-334 404-700 (1238)
91 KOG3060 Uncharacterized conser 99.4 2.4E-10 5.3E-15 107.8 24.0 175 155-337 48-223 (289)
92 COG3071 HemY Uncharacterized e 99.4 1.1E-09 2.3E-14 110.1 29.8 240 88-335 118-391 (400)
93 COG5010 TadD Flp pilus assembl 99.4 9.6E-11 2.1E-15 111.7 20.8 177 107-295 52-228 (257)
94 TIGR02552 LcrH_SycD type III s 99.4 2.3E-11 5E-16 109.5 15.3 113 223-337 5-117 (135)
95 TIGR02552 LcrH_SycD type III s 99.4 2E-11 4.3E-16 109.9 14.8 107 200-306 16-122 (135)
96 KOG0553 TPR repeat-containing 99.3 1.7E-11 3.6E-16 119.0 13.9 117 200-316 80-196 (304)
97 KOG1156 N-terminal acetyltrans 99.3 1.1E-09 2.5E-14 115.6 28.3 289 17-337 31-437 (700)
98 KOG1156 N-terminal acetyltrans 99.3 2.5E-10 5.4E-15 120.5 23.0 228 97-337 16-251 (700)
99 PLN03081 pentatricopeptide (PP 99.3 6.1E-10 1.3E-14 128.6 28.4 287 26-340 188-496 (697)
100 KOG1127 TPR repeat-containing 99.3 6.8E-11 1.5E-15 129.5 18.5 304 20-338 485-883 (1238)
101 PRK14720 transcript cleavage f 99.3 4.4E-10 9.5E-15 127.0 25.5 237 82-351 25-304 (906)
102 KOG0553 TPR repeat-containing 99.3 5.4E-11 1.2E-15 115.4 14.7 121 124-252 80-200 (304)
103 PRK14720 transcript cleavage f 99.3 3.1E-10 6.7E-15 128.3 20.8 200 120-338 26-256 (906)
104 KOG1128 Uncharacterized conser 99.2 1.2E-10 2.5E-15 124.5 15.8 239 23-314 394-634 (777)
105 PLN03077 Protein ECB2; Provisi 99.2 1.5E-09 3.3E-14 128.4 27.0 191 129-334 528-720 (857)
106 PRK15363 pathogenicity island 99.2 2.4E-10 5.3E-15 102.1 15.0 104 230-335 29-133 (157)
107 PRK15363 pathogenicity island 99.2 3.8E-10 8.3E-15 100.8 15.5 101 200-300 34-134 (157)
108 PLN03077 Protein ECB2; Provisi 99.2 1.9E-09 4.2E-14 127.5 26.2 203 128-345 458-664 (857)
109 COG3071 HemY Uncharacterized e 99.2 2.8E-08 6.1E-13 100.0 29.7 238 91-344 87-367 (400)
110 PF12569 NARP1: NMDA receptor- 99.2 1.9E-08 4.2E-13 109.2 30.3 205 126-340 5-263 (517)
111 COG4783 Putative Zn-dependent 99.2 7.6E-09 1.7E-13 106.7 23.9 153 156-335 303-455 (484)
112 PF14938 SNAP: Soluble NSF att 99.2 1.9E-09 4.1E-14 109.9 19.7 212 122-336 32-268 (282)
113 PLN03088 SGT1, suppressor of 99.2 8.6E-10 1.9E-14 115.8 16.8 113 204-316 5-117 (356)
114 PRK04841 transcriptional regul 99.2 1.9E-08 4.1E-13 120.2 30.2 284 29-339 454-765 (903)
115 KOG1941 Acetylcholine receptor 99.1 1.7E-08 3.8E-13 99.7 23.9 250 91-342 46-328 (518)
116 PF04733 Coatomer_E: Coatomer 99.1 1.3E-09 2.9E-14 110.4 15.3 242 86-348 33-279 (290)
117 PRK04841 transcriptional regul 99.1 7.2E-08 1.6E-12 115.2 32.7 242 92-335 456-721 (903)
118 COG4783 Putative Zn-dependent 99.1 1.1E-08 2.5E-13 105.4 21.9 149 200-352 305-453 (484)
119 PRK10866 outer membrane biogen 99.1 2.8E-08 6E-13 98.4 23.7 182 125-330 32-237 (243)
120 PF13525 YfiO: Outer membrane 99.1 1.8E-08 3.8E-13 97.4 21.7 177 124-324 4-197 (203)
121 PLN03088 SGT1, suppressor of 99.1 2.5E-09 5.5E-14 112.3 15.9 111 164-282 7-117 (356)
122 PF13525 YfiO: Outer membrane 99.0 4.3E-08 9.4E-13 94.6 21.7 172 158-353 4-190 (203)
123 KOG1941 Acetylcholine receptor 99.0 8.8E-09 1.9E-13 101.7 16.5 240 92-336 10-277 (518)
124 PRK10866 outer membrane biogen 99.0 7.3E-08 1.6E-12 95.4 23.4 173 157-353 30-224 (243)
125 KOG2376 Signal recognition par 99.0 4.3E-08 9.2E-13 102.9 21.6 225 95-340 19-259 (652)
126 PRK02603 photosystem I assembl 99.0 2.9E-08 6.2E-13 93.3 18.6 121 157-302 33-153 (172)
127 TIGR02795 tol_pal_ybgF tol-pal 99.0 1E-08 2.2E-13 89.7 14.6 105 202-306 3-113 (119)
128 PF14938 SNAP: Soluble NSF att 99.0 4.4E-08 9.5E-13 99.9 20.4 181 140-339 30-230 (282)
129 KOG1915 Cell cycle control pro 99.0 1.9E-06 4.1E-11 88.4 30.6 246 84-333 240-499 (677)
130 COG4235 Cytochrome c biogenesi 99.0 4.4E-08 9.6E-13 96.2 18.2 123 216-340 137-262 (287)
131 TIGR02795 tol_pal_ybgF tol-pal 98.9 2.2E-08 4.7E-13 87.6 14.4 106 126-236 3-111 (119)
132 PRK11906 transcriptional regul 98.9 1.8E-07 3.9E-12 97.4 22.9 179 163-352 259-454 (458)
133 KOG3785 Uncharacterized conser 98.9 1.7E-07 3.7E-12 92.5 21.4 199 128-331 154-419 (557)
134 PRK02603 photosystem I assembl 98.9 5.2E-08 1.1E-12 91.6 17.5 121 120-268 30-153 (172)
135 CHL00033 ycf3 photosystem I as 98.9 2.5E-08 5.5E-13 93.4 15.3 101 141-246 15-117 (168)
136 cd00189 TPR Tetratricopeptide 98.9 1.4E-08 3E-13 83.8 11.8 97 238-336 3-99 (100)
137 KOG4340 Uncharacterized conser 98.9 5.2E-08 1.1E-12 94.0 17.0 215 99-328 21-264 (459)
138 CHL00033 ycf3 photosystem I as 98.9 2.4E-08 5.1E-13 93.6 14.6 81 200-280 34-117 (168)
139 COG0457 NrfG FOG: TPR repeat [ 98.9 3.9E-06 8.5E-11 81.2 31.1 226 101-337 36-268 (291)
140 cd00189 TPR Tetratricopeptide 98.9 1.2E-08 2.7E-13 84.1 11.3 99 203-301 2-100 (100)
141 PF13414 TPR_11: TPR repeat; P 98.9 5.3E-09 1.1E-13 82.0 8.3 65 236-300 4-69 (69)
142 KOG2376 Signal recognition par 98.9 1.3E-06 2.9E-11 91.9 27.7 167 95-268 53-257 (652)
143 PF04733 Coatomer_E: Coatomer 98.9 1.1E-08 2.3E-13 103.9 11.8 187 104-304 82-271 (290)
144 PF09976 TPR_21: Tetratricopep 98.9 9.1E-08 2E-12 87.2 16.9 124 133-262 19-145 (145)
145 COG4785 NlpI Lipoprotein NlpI, 98.9 3.4E-07 7.3E-12 84.7 19.9 200 120-335 60-267 (297)
146 PF13414 TPR_11: TPR repeat; P 98.9 7.6E-09 1.6E-13 81.1 7.9 67 268-336 2-69 (69)
147 PRK10153 DNA-binding transcrip 98.9 1.1E-07 2.4E-12 104.0 19.0 144 126-304 340-488 (517)
148 PRK10153 DNA-binding transcrip 98.9 1.1E-07 2.3E-12 104.2 18.8 139 200-341 338-489 (517)
149 COG4235 Cytochrome c biogenesi 98.9 7.3E-08 1.6E-12 94.6 15.4 121 175-303 138-261 (287)
150 KOG4648 Uncharacterized conser 98.8 2.4E-09 5.1E-14 104.9 4.9 199 128-338 100-334 (536)
151 KOG4340 Uncharacterized conser 98.8 1E-07 2.2E-12 92.0 15.6 188 135-334 20-207 (459)
152 PF09976 TPR_21: Tetratricopep 98.8 2.2E-07 4.7E-12 84.7 17.0 118 212-332 22-145 (145)
153 KOG1915 Cell cycle control pro 98.8 3.4E-06 7.3E-11 86.6 26.6 264 86-353 205-486 (677)
154 KOG0543 FKBP-type peptidyl-pro 98.8 1.3E-07 2.7E-12 96.1 15.7 135 200-336 207-357 (397)
155 KOG0543 FKBP-type peptidyl-pro 98.8 5.8E-08 1.3E-12 98.5 13.1 101 200-300 256-357 (397)
156 PRK11906 transcriptional regul 98.8 2.9E-07 6.3E-12 95.8 18.5 162 127-296 257-434 (458)
157 PF12895 Apc3: Anaphase-promot 98.8 2.4E-08 5.2E-13 81.6 7.8 80 214-294 2-83 (84)
158 COG0457 NrfG FOG: TPR repeat [ 98.8 6.6E-06 1.4E-10 79.6 26.0 207 89-301 60-268 (291)
159 PF13432 TPR_16: Tetratricopep 98.7 3.6E-08 7.8E-13 76.2 7.8 62 241-302 3-64 (65)
160 PF12895 Apc3: Anaphase-promot 98.7 7E-08 1.5E-12 78.8 9.1 81 138-227 2-84 (84)
161 PF13432 TPR_16: Tetratricopep 98.7 6.4E-08 1.4E-12 74.8 8.2 65 205-269 1-65 (65)
162 KOG3785 Uncharacterized conser 98.7 1.7E-06 3.7E-11 85.6 19.7 206 100-323 34-239 (557)
163 KOG1070 rRNA processing protei 98.7 1.1E-05 2.4E-10 92.5 28.1 191 99-298 1469-1663(1710)
164 PRK15331 chaperone protein Sic 98.7 3.8E-07 8.3E-12 82.1 13.3 98 200-297 36-133 (165)
165 KOG1070 rRNA processing protei 98.7 4.8E-06 1E-10 95.3 25.0 205 120-335 1453-1664(1710)
166 PRK10803 tol-pal system protei 98.7 7.6E-07 1.6E-11 88.8 16.7 106 126-236 143-252 (263)
167 PRK15331 chaperone protein Sic 98.7 3.4E-07 7.3E-12 82.4 12.5 111 230-342 32-142 (165)
168 PF12688 TPR_5: Tetratrico pep 98.7 4.8E-07 1.1E-11 78.4 13.0 99 160-263 2-103 (120)
169 PRK10803 tol-pal system protei 98.6 1.1E-06 2.4E-11 87.6 16.7 103 202-304 143-252 (263)
170 COG4700 Uncharacterized protei 98.6 5.1E-06 1.1E-10 75.2 18.8 157 165-333 62-221 (251)
171 PF09295 ChAPs: ChAPs (Chs5p-A 98.6 9.4E-07 2E-11 92.6 16.4 115 210-329 178-292 (395)
172 PF09295 ChAPs: ChAPs (Chs5p-A 98.6 1.1E-06 2.4E-11 92.1 16.8 111 181-295 184-294 (395)
173 COG3898 Uncharacterized membra 98.6 9.4E-05 2E-09 74.5 27.7 244 95-349 127-373 (531)
174 KOG2047 mRNA splicing factor [ 98.6 3.4E-05 7.3E-10 82.2 25.2 294 29-337 250-582 (835)
175 COG4785 NlpI Lipoprotein NlpI, 98.5 1.1E-05 2.3E-10 74.9 18.9 215 85-316 62-288 (297)
176 COG4105 ComL DNA uptake lipopr 98.5 3.8E-05 8.3E-10 74.1 23.4 105 125-234 34-149 (254)
177 KOG3081 Vesicle coat complex C 98.5 9.9E-05 2.1E-09 71.0 25.5 164 160-340 109-277 (299)
178 PF12688 TPR_5: Tetratrico pep 98.5 2.5E-06 5.5E-11 74.0 13.5 96 202-297 2-103 (120)
179 COG4700 Uncharacterized protei 98.5 1.2E-05 2.7E-10 72.8 17.2 143 142-294 73-218 (251)
180 PF14559 TPR_19: Tetratricopep 98.5 4.4E-07 9.5E-12 70.7 7.1 64 247-310 3-66 (68)
181 KOG2047 mRNA splicing factor [ 98.5 0.0002 4.4E-09 76.5 28.4 244 84-335 421-688 (835)
182 KOG4234 TPR repeat-containing 98.5 3.1E-06 6.7E-11 77.5 12.7 100 237-338 97-201 (271)
183 PF13371 TPR_9: Tetratricopept 98.5 1E-06 2.3E-11 69.7 8.6 66 243-308 3-68 (73)
184 PF14559 TPR_19: Tetratricopep 98.4 6.6E-07 1.4E-11 69.7 7.3 68 211-278 1-68 (68)
185 COG4105 ComL DNA uptake lipopr 98.4 8.8E-05 1.9E-09 71.7 23.0 173 158-338 33-237 (254)
186 COG4976 Predicted methyltransf 98.4 4.9E-07 1.1E-11 84.3 7.1 189 277-537 3-211 (287)
187 KOG4648 Uncharacterized conser 98.4 7.4E-07 1.6E-11 87.7 8.2 96 240-337 102-197 (536)
188 KOG4234 TPR repeat-containing 98.4 4E-06 8.6E-11 76.8 11.9 103 166-271 102-204 (271)
189 KOG2796 Uncharacterized conser 98.4 0.00014 2.9E-09 69.7 22.4 221 120-342 64-323 (366)
190 PF13371 TPR_9: Tetratricopept 98.4 2E-06 4.4E-11 68.0 8.8 71 207-277 1-71 (73)
191 COG1729 Uncharacterized protei 98.4 9E-06 2E-10 79.2 14.7 106 128-238 144-252 (262)
192 COG1729 Uncharacterized protei 98.4 1E-05 2.2E-10 78.9 14.9 105 204-308 144-254 (262)
193 KOG4555 TPR repeat-containing 98.4 2.1E-05 4.5E-10 67.1 14.8 104 126-233 44-147 (175)
194 KOG1585 Protein required for f 98.4 0.00015 3.3E-09 68.7 22.0 218 106-329 11-251 (308)
195 KOG1586 Protein required for f 98.3 0.00012 2.7E-09 68.9 20.4 176 125-303 34-229 (288)
196 PF13424 TPR_12: Tetratricopep 98.3 1.6E-06 3.6E-11 69.5 6.9 74 156-230 2-75 (78)
197 KOG3081 Vesicle coat complex C 98.3 0.00018 4E-09 69.2 21.5 163 126-303 109-276 (299)
198 KOG4555 TPR repeat-containing 98.3 3.3E-05 7.2E-10 65.9 14.4 102 201-302 43-148 (175)
199 PF13512 TPR_18: Tetratricopep 98.3 2.4E-05 5.2E-10 69.1 13.9 87 125-216 10-99 (142)
200 PLN03098 LPA1 LOW PSII ACCUMUL 98.3 3.7E-06 8.1E-11 87.6 9.9 65 200-264 74-141 (453)
201 KOG2796 Uncharacterized conser 98.3 5.7E-05 1.2E-09 72.2 16.8 201 90-314 124-334 (366)
202 PF13512 TPR_18: Tetratricopep 98.3 2.9E-05 6.2E-10 68.6 13.9 88 158-250 9-99 (142)
203 KOG1586 Protein required for f 98.3 0.0002 4.3E-09 67.5 19.8 181 138-337 27-227 (288)
204 KOG3617 WD40 and TPR repeat-co 98.2 0.00045 9.8E-09 75.6 25.2 214 95-335 807-1052(1416)
205 KOG1585 Protein required for f 98.2 0.00052 1.1E-08 65.2 22.2 175 159-337 31-222 (308)
206 PLN03098 LPA1 LOW PSII ACCUMUL 98.2 4.9E-06 1.1E-10 86.8 9.7 70 230-299 70-142 (453)
207 PF13424 TPR_12: Tetratricopep 98.2 4.1E-06 8.9E-11 67.2 6.9 69 122-190 2-77 (78)
208 KOG3617 WD40 and TPR repeat-co 98.2 0.00047 1E-08 75.5 23.7 230 101-332 832-1172(1416)
209 PF00569 ZZ: Zinc finger, ZZ t 98.1 4.9E-07 1.1E-11 63.8 -0.1 42 588-629 2-45 (46)
210 KOG2610 Uncharacterized conser 98.1 0.00036 7.8E-09 69.1 18.6 164 128-296 106-274 (491)
211 KOG2053 Mitochondrial inherita 98.1 0.0036 7.8E-08 69.8 28.2 226 99-338 20-259 (932)
212 PF06552 TOM20_plant: Plant sp 98.1 3.6E-05 7.9E-10 70.1 10.4 91 252-342 8-117 (186)
213 PF04184 ST7: ST7 protein; In 98.0 0.00044 9.6E-09 72.4 19.0 130 129-260 172-320 (539)
214 PF06552 TOM20_plant: Plant sp 98.0 4.4E-05 9.5E-10 69.5 10.3 93 217-309 7-120 (186)
215 KOG2471 TPR repeat-containing 97.9 0.00052 1.1E-08 71.2 17.0 240 87-337 239-651 (696)
216 smart00291 ZnF_ZZ Zinc-binding 97.9 7.2E-06 1.6E-10 57.2 2.1 40 588-627 2-42 (44)
217 KOG4642 Chaperone-dependent E3 97.8 0.00013 2.8E-09 69.0 10.4 98 201-298 10-107 (284)
218 KOG2610 Uncharacterized conser 97.8 0.0023 4.9E-08 63.6 19.1 160 163-332 107-274 (491)
219 KOG4642 Chaperone-dependent E3 97.8 0.00024 5.2E-09 67.2 11.8 97 126-230 11-107 (284)
220 COG3898 Uncharacterized membra 97.8 0.0072 1.6E-07 61.4 22.4 201 131-342 90-300 (531)
221 PF04184 ST7: ST7 protein; In 97.8 0.0015 3.2E-08 68.7 18.1 167 161-338 170-379 (539)
222 KOG0545 Aryl-hydrocarbon recep 97.8 0.0004 8.8E-09 65.9 12.4 101 236-338 179-297 (329)
223 PF13428 TPR_14: Tetratricopep 97.7 6.9E-05 1.5E-09 52.6 5.2 40 271-310 3-42 (44)
224 KOG2471 TPR repeat-containing 97.7 0.00047 1E-08 71.4 13.0 140 168-315 215-381 (696)
225 PF05843 Suf: Suppressor of fo 97.7 0.0012 2.6E-08 67.2 16.0 132 162-301 4-139 (280)
226 KOG0545 Aryl-hydrocarbon recep 97.7 0.00073 1.6E-08 64.2 12.9 108 200-307 177-302 (329)
227 PF13428 TPR_14: Tetratricopep 97.7 0.00011 2.4E-09 51.5 5.3 41 237-277 3-43 (44)
228 KOG2053 Mitochondrial inherita 97.7 0.011 2.4E-07 66.0 23.2 184 136-331 20-216 (932)
229 cd02334 ZZ_dystrophin Zinc fin 97.6 2.3E-05 5E-10 55.6 1.5 47 591-638 1-49 (49)
230 PF05843 Suf: Suppressor of fo 97.6 0.0013 2.9E-08 66.7 15.0 134 202-337 2-139 (280)
231 COG2909 MalT ATP-dependent tra 97.6 0.085 1.8E-06 59.5 29.6 308 23-332 343-686 (894)
232 cd02342 ZZ_UBA_plant Zinc fing 97.6 1.7E-05 3.6E-10 53.3 0.7 31 591-621 1-33 (43)
233 PF13281 DUF4071: Domain of un 97.6 0.051 1.1E-06 56.6 26.3 184 158-348 140-349 (374)
234 KOG2300 Uncharacterized conser 97.6 0.022 4.8E-07 59.5 22.7 220 100-329 287-551 (629)
235 PF13281 DUF4071: Domain of un 97.6 0.043 9.4E-07 57.1 25.0 171 126-304 142-340 (374)
236 KOG0376 Serine-threonine phosp 97.6 0.00011 2.5E-09 76.5 5.9 113 203-315 6-118 (476)
237 PF13431 TPR_17: Tetratricopep 97.6 8.2E-05 1.8E-09 48.8 3.2 30 259-288 3-32 (34)
238 KOG3616 Selective LIM binding 97.5 0.019 4.2E-07 62.5 21.2 197 69-295 687-908 (1636)
239 cd02336 ZZ_RSC8 Zinc finger, Z 97.5 5.9E-05 1.3E-09 52.3 1.7 42 591-632 1-43 (45)
240 PF13431 TPR_17: Tetratricopep 97.4 0.00014 3.1E-09 47.6 3.3 34 223-256 1-34 (34)
241 COG3118 Thioredoxin domain-con 97.4 0.022 4.7E-07 56.4 19.3 159 126-292 135-295 (304)
242 KOG0376 Serine-threonine phosp 97.4 0.00023 4.9E-09 74.3 5.9 109 129-245 8-116 (476)
243 PF10300 DUF3808: Protein of u 97.4 0.01 2.2E-07 64.9 19.1 119 172-298 246-376 (468)
244 cd02344 ZZ_HERC2 Zinc finger, 97.4 8.2E-05 1.8E-09 51.5 1.6 36 591-626 1-38 (45)
245 PF03704 BTAD: Bacterial trans 97.3 0.01 2.3E-07 53.8 15.7 114 204-332 9-123 (146)
246 cd02338 ZZ_PCMF_like Zinc fing 97.3 9.7E-05 2.1E-09 52.8 1.3 37 591-627 1-39 (49)
247 PF00515 TPR_1: Tetratricopept 97.3 0.00043 9.2E-09 45.3 4.3 31 271-301 3-33 (34)
248 PF02259 FAT: FAT domain; Int 97.3 0.13 2.9E-06 53.9 25.7 173 156-337 143-341 (352)
249 KOG2300 Uncharacterized conser 97.3 0.097 2.1E-06 54.9 22.9 195 137-336 287-516 (629)
250 KOG0551 Hsp90 co-chaperone CNS 97.3 0.0022 4.7E-08 63.8 10.5 97 238-336 84-184 (390)
251 KOG0551 Hsp90 co-chaperone CNS 97.2 0.0026 5.6E-08 63.3 10.8 102 200-301 80-185 (390)
252 PF10300 DUF3808: Protein of u 97.2 0.013 2.8E-07 64.1 17.5 166 167-335 196-377 (468)
253 cd02339 ZZ_Mind_bomb Zinc fing 97.2 0.00017 3.8E-09 50.2 1.8 34 591-624 1-36 (45)
254 KOG1550 Extracellular protein 97.2 0.073 1.6E-06 59.6 23.7 220 100-337 261-541 (552)
255 PF07719 TPR_2: Tetratricopept 97.2 0.00082 1.8E-08 43.9 5.0 31 271-301 3-33 (34)
256 PF00515 TPR_1: Tetratricopept 97.2 0.00088 1.9E-08 43.8 4.9 32 202-233 2-33 (34)
257 COG0790 FOG: TPR repeat, SEL1 97.2 0.12 2.6E-06 52.9 23.3 185 136-337 52-269 (292)
258 cd02340 ZZ_NBR1_like Zinc fing 97.1 0.00024 5.2E-09 49.1 1.8 32 591-622 1-33 (43)
259 PF03704 BTAD: Bacterial trans 97.1 0.014 3E-07 52.9 14.1 65 234-298 61-125 (146)
260 PF07719 TPR_2: Tetratricopept 97.1 0.0013 2.9E-08 42.8 5.2 31 237-267 3-33 (34)
261 COG2976 Uncharacterized protei 97.1 0.023 4.9E-07 52.7 14.5 108 83-191 84-191 (207)
262 PF02259 FAT: FAT domain; Int 97.1 0.2 4.4E-06 52.6 24.4 134 200-338 145-291 (352)
263 KOG1550 Extracellular protein 97.0 0.1 2.2E-06 58.5 21.8 173 104-295 228-423 (552)
264 cd02345 ZZ_dah Zinc finger, ZZ 97.0 0.00031 6.7E-09 50.1 1.2 35 591-625 1-37 (49)
265 KOG1308 Hsp70-interacting prot 97.0 0.0005 1.1E-08 68.6 3.0 95 244-340 123-217 (377)
266 COG2976 Uncharacterized protei 97.0 0.023 5E-07 52.7 13.5 100 161-267 91-191 (207)
267 KOG1308 Hsp70-interacting prot 96.9 0.00072 1.6E-08 67.5 3.9 119 210-331 123-241 (377)
268 cd02341 ZZ_ZZZ3 Zinc finger, Z 96.9 0.00032 7E-09 49.5 1.0 33 591-623 1-37 (48)
269 COG0790 FOG: TPR repeat, SEL1 96.9 0.18 3.9E-06 51.5 21.8 166 99-283 52-236 (292)
270 COG3118 Thioredoxin domain-con 96.9 0.041 9E-07 54.4 15.6 149 159-316 134-285 (304)
271 KOG3616 Selective LIM binding 96.9 0.19 4.2E-06 55.1 21.5 214 99-335 743-1025(1636)
272 KOG1914 mRNA cleavage and poly 96.9 0.39 8.5E-06 51.3 23.0 181 145-334 265-464 (656)
273 COG2909 MalT ATP-dependent tra 96.8 0.61 1.3E-05 52.9 25.5 203 128-335 418-648 (894)
274 KOG0985 Vesicle coat protein c 96.8 0.28 6.1E-06 55.9 22.1 192 126-333 1105-1340(1666)
275 cd02249 ZZ Zinc finger, ZZ typ 96.6 0.00089 1.9E-08 47.2 1.0 33 591-623 1-34 (46)
276 PF08631 SPO22: Meiosis protei 96.6 0.27 5.9E-06 49.9 19.5 166 169-334 3-186 (278)
277 PF04910 Tcf25: Transcriptiona 96.5 0.14 3E-06 53.9 17.6 39 151-189 32-70 (360)
278 PF13181 TPR_8: Tetratricopept 96.5 0.0045 9.8E-08 40.3 4.2 30 271-300 3-32 (34)
279 KOG0530 Protein farnesyltransf 96.5 0.095 2.1E-06 50.8 14.3 169 139-315 57-233 (318)
280 PF13181 TPR_8: Tetratricopept 96.4 0.0064 1.4E-07 39.6 4.4 30 203-232 3-32 (34)
281 PF08424 NRDE-2: NRDE-2, neces 96.4 0.27 5.8E-06 51.0 18.5 158 146-335 6-184 (321)
282 PF10602 RPN7: 26S proteasome 96.4 0.17 3.8E-06 47.4 15.5 107 122-230 33-142 (177)
283 PF08631 SPO22: Meiosis protei 96.4 1.4 3E-05 44.7 25.8 222 99-332 4-273 (278)
284 KOG4507 Uncharacterized conser 96.3 0.012 2.7E-07 62.5 7.9 106 240-347 611-719 (886)
285 KOG1914 mRNA cleavage and poly 96.2 1.7 3.7E-05 46.7 22.5 187 141-336 309-503 (656)
286 KOG0530 Protein farnesyltransf 96.1 0.56 1.2E-05 45.7 17.4 208 95-313 50-269 (318)
287 KOG1258 mRNA processing protei 96.1 2.9 6.3E-05 45.7 25.6 188 122-316 294-488 (577)
288 PF10345 Cohesin_load: Cohesin 96.0 1.2 2.7E-05 50.6 22.8 188 141-331 37-251 (608)
289 PF08424 NRDE-2: NRDE-2, neces 95.9 0.52 1.1E-05 48.9 17.6 83 252-334 48-131 (321)
290 PF10345 Cohesin_load: Cohesin 95.8 3.9 8.3E-05 46.6 26.0 195 97-295 30-251 (608)
291 PF13176 TPR_7: Tetratricopept 95.8 0.02 4.4E-07 37.9 4.5 30 161-190 1-30 (36)
292 KOG0985 Vesicle coat protein c 95.8 1.2 2.6E-05 51.2 20.2 204 95-336 1055-1310(1666)
293 KOG4507 Uncharacterized conser 95.7 0.063 1.4E-06 57.4 10.0 105 200-304 212-318 (886)
294 PF13176 TPR_7: Tetratricopept 95.7 0.02 4.4E-07 37.9 4.2 25 272-296 2-26 (36)
295 PF12968 DUF3856: Domain of Un 95.7 0.33 7.1E-06 41.2 12.1 105 126-230 8-129 (144)
296 PF07079 DUF1347: Protein of u 95.7 3.5 7.5E-05 43.5 30.3 86 242-330 386-520 (549)
297 cd02335 ZZ_ADA2 Zinc finger, Z 95.6 0.0071 1.5E-07 43.3 1.9 36 591-626 1-38 (49)
298 KOG3824 Huntingtin interacting 95.6 0.041 8.9E-07 54.3 7.6 74 205-278 120-193 (472)
299 KOG3783 Uncharacterized conser 95.5 2.4 5.2E-05 45.7 20.9 68 272-341 452-527 (546)
300 PF13174 TPR_6: Tetratricopept 95.5 0.026 5.6E-07 36.2 4.2 31 127-157 2-32 (33)
301 PF04910 Tcf25: Transcriptiona 95.5 0.6 1.3E-05 49.1 16.4 142 186-337 33-225 (360)
302 KOG1258 mRNA processing protei 95.5 2.2 4.9E-05 46.5 20.6 170 159-338 297-474 (577)
303 KOG3824 Huntingtin interacting 95.5 0.048 1E-06 53.8 7.5 72 241-312 122-193 (472)
304 PF09613 HrpB1_HrpK: Bacterial 95.4 0.97 2.1E-05 41.1 15.1 75 242-316 17-91 (160)
305 PF07079 DUF1347: Protein of u 95.4 3.8 8.3E-05 43.2 21.1 56 108-163 362-418 (549)
306 cd02337 ZZ_CBP Zinc finger, ZZ 95.4 0.0078 1.7E-07 41.0 1.3 37 591-628 1-38 (41)
307 PF12968 DUF3856: Domain of Un 95.3 1.4 3.1E-05 37.5 14.6 104 161-264 9-129 (144)
308 PF13174 TPR_6: Tetratricopept 95.3 0.027 5.9E-07 36.1 3.7 28 273-300 4-31 (33)
309 PF09613 HrpB1_HrpK: Bacterial 95.2 0.39 8.4E-06 43.6 11.8 87 200-286 9-95 (160)
310 PRK10941 hypothetical protein; 95.2 0.25 5.5E-06 49.4 11.8 75 237-311 183-257 (269)
311 PF04781 DUF627: Protein of un 95.1 0.16 3.4E-06 42.8 8.5 93 166-263 3-106 (111)
312 KOG1464 COP9 signalosome, subu 95.1 0.75 1.6E-05 44.9 14.0 194 139-336 41-262 (440)
313 PF14561 TPR_20: Tetratricopep 95.0 0.24 5.1E-06 40.7 9.2 62 255-316 8-71 (90)
314 PF04781 DUF627: Protein of un 95.0 0.21 4.5E-06 42.2 8.9 47 287-335 62-108 (111)
315 PF09986 DUF2225: Uncharacteri 95.0 0.51 1.1E-05 45.6 13.0 93 172-265 90-195 (214)
316 PRK10941 hypothetical protein; 94.9 0.3 6.4E-06 49.0 11.6 79 200-278 180-258 (269)
317 KOG1839 Uncharacterized protei 94.9 0.23 4.9E-06 58.6 12.0 172 161-335 934-1129(1236)
318 COG5159 RPN6 26S proteasome re 94.9 4.5 9.8E-05 40.0 20.1 172 162-337 128-317 (421)
319 COG3914 Spy Predicted O-linked 94.7 1 2.3E-05 48.8 15.3 101 208-308 74-181 (620)
320 PF14853 Fis1_TPR_C: Fis1 C-te 94.7 0.17 3.7E-06 36.7 6.7 42 126-167 2-43 (53)
321 COG4649 Uncharacterized protei 94.7 3.1 6.8E-05 38.1 16.0 122 138-263 71-195 (221)
322 KOG1463 26S proteasome regulat 94.7 5.7 0.00012 40.4 19.7 173 163-337 132-319 (411)
323 PF14561 TPR_20: Tetratricopep 94.7 0.37 8.1E-06 39.5 9.5 75 220-294 7-83 (90)
324 PF09986 DUF2225: Uncharacteri 94.6 0.53 1.1E-05 45.6 12.2 104 138-243 90-208 (214)
325 KOG4301 Beta-dystrobrevin [Cyt 94.6 0.057 1.2E-06 53.6 5.3 183 456-641 105-292 (434)
326 PF14853 Fis1_TPR_C: Fis1 C-te 94.6 0.22 4.7E-06 36.2 7.0 35 272-306 4-38 (53)
327 KOG2396 HAT (Half-A-TPR) repea 94.5 0.45 9.8E-06 50.4 12.0 90 219-308 89-179 (568)
328 KOG4814 Uncharacterized conser 94.5 1.6 3.5E-05 47.7 16.0 102 161-264 356-457 (872)
329 KOG1839 Uncharacterized protei 94.4 0.39 8.4E-06 56.7 12.4 172 127-298 934-1128(1236)
330 cd02343 ZZ_EF Zinc finger, ZZ 94.4 0.022 4.8E-07 40.0 1.4 40 591-630 1-41 (48)
331 smart00028 TPR Tetratricopepti 94.3 0.062 1.3E-06 33.4 3.4 29 272-300 4-32 (34)
332 PF10602 RPN7: 26S proteasome 94.0 1.4 3E-05 41.3 13.2 107 83-189 31-143 (177)
333 KOG4814 Uncharacterized conser 93.9 7.9 0.00017 42.6 19.6 97 237-335 356-458 (872)
334 smart00028 TPR Tetratricopepti 93.7 0.099 2.1E-06 32.4 3.6 29 238-266 4-32 (34)
335 COG4649 Uncharacterized protei 93.7 5.7 0.00012 36.5 16.6 139 170-315 69-212 (221)
336 PRK13184 pknD serine/threonine 93.7 5.8 0.00013 46.9 20.0 137 95-235 482-625 (932)
337 KOG1463 26S proteasome regulat 93.6 6.6 0.00014 39.9 17.4 175 90-266 130-318 (411)
338 PRK15180 Vi polysaccharide bio 93.5 0.49 1.1E-05 49.7 9.8 124 212-337 300-423 (831)
339 PF12862 Apc5: Anaphase-promot 93.4 0.77 1.7E-05 38.0 9.3 63 134-196 7-78 (94)
340 KOG2041 WD40 repeat protein [G 93.4 3.1 6.7E-05 46.0 15.7 155 126-293 693-876 (1189)
341 KOG2041 WD40 repeat protein [G 93.3 4.3 9.4E-05 44.9 16.6 135 94-259 740-876 (1189)
342 COG4976 Predicted methyltransf 93.2 0.14 3E-06 48.7 4.8 57 246-302 6-62 (287)
343 PF11207 DUF2989: Protein of u 93.1 4.4 9.5E-05 38.3 14.6 105 104-221 93-198 (203)
344 TIGR02561 HrpB1_HrpK type III 93.1 1.4 3.1E-05 39.3 10.7 69 248-316 23-91 (153)
345 KOG3807 Predicted membrane pro 93.1 9 0.00019 38.8 17.3 60 128-189 187-246 (556)
346 KOG1310 WD40 repeat protein [G 93.0 0.35 7.5E-06 51.5 7.9 88 248-337 387-477 (758)
347 KOG2396 HAT (Half-A-TPR) repea 93.0 1.5 3.2E-05 46.7 12.4 92 176-275 88-180 (568)
348 TIGR02561 HrpB1_HrpK type III 92.9 4.6 9.9E-05 36.2 13.6 87 200-286 9-95 (153)
349 KOG1310 WD40 repeat protein [G 92.8 0.38 8.2E-06 51.2 7.8 92 212-303 385-479 (758)
350 KOG2422 Uncharacterized conser 92.6 12 0.00027 40.7 18.7 163 138-301 251-451 (665)
351 PRK15180 Vi polysaccharide bio 92.6 1.7 3.7E-05 45.8 12.2 128 134-269 298-425 (831)
352 KOG1538 Uncharacterized conser 92.5 6.1 0.00013 43.4 16.4 22 92-113 636-657 (1081)
353 KOG2581 26S proteasome regulat 92.5 16 0.00034 38.3 19.2 197 134-337 135-352 (493)
354 KOG0890 Protein kinase of the 92.5 13 0.00029 47.2 21.1 148 93-242 1634-1796(2382)
355 PF12862 Apc5: Anaphase-promot 92.4 0.98 2.1E-05 37.3 8.6 64 168-231 7-71 (94)
356 COG5107 RNA14 Pre-mRNA 3'-end 92.2 3.7 8.1E-05 43.2 13.9 175 147-334 290-495 (660)
357 KOG1464 COP9 signalosome, subu 92.1 13 0.00028 36.6 18.4 212 103-316 42-285 (440)
358 PF04190 DUF410: Protein of un 92.1 13 0.00028 37.2 17.8 101 124-226 9-115 (260)
359 KOG4582 Uncharacterized conser 91.9 0.087 1.9E-06 53.0 1.9 46 577-622 134-186 (278)
360 PF13374 TPR_10: Tetratricopep 91.8 0.37 8E-06 32.5 4.6 28 271-298 4-31 (42)
361 KOG4014 Uncharacterized conser 91.8 11 0.00023 35.0 14.7 185 125-335 34-234 (248)
362 PF13374 TPR_10: Tetratricopep 91.7 0.41 8.9E-06 32.3 4.7 29 236-264 3-31 (42)
363 PF15015 NYD-SP12_N: Spermatog 91.6 2.5 5.5E-05 44.0 11.9 120 205-327 180-320 (569)
364 KOG3807 Predicted membrane pro 91.6 12 0.00025 38.0 16.0 152 160-334 185-340 (556)
365 PF10579 Rapsyn_N: Rapsyn N-te 91.5 1.8 3.8E-05 34.1 8.3 55 98-152 16-70 (80)
366 KOG0890 Protein kinase of the 91.5 21 0.00046 45.5 21.3 64 268-335 1669-1732(2382)
367 COG5159 RPN6 26S proteasome re 91.5 12 0.00026 37.1 15.7 95 239-335 129-236 (421)
368 KOG3364 Membrane protein invol 91.3 3.9 8.3E-05 35.9 10.9 72 160-238 33-108 (149)
369 KOG1538 Uncharacterized conser 91.2 11 0.00024 41.5 16.6 52 277-334 781-833 (1081)
370 COG5107 RNA14 Pre-mRNA 3'-end 90.4 27 0.00058 37.1 20.7 210 126-340 303-537 (660)
371 KOG3783 Uncharacterized conser 90.0 32 0.0007 37.4 20.0 206 95-302 274-524 (546)
372 COG5191 Uncharacterized conser 89.4 0.68 1.5E-05 46.1 5.4 87 223-309 95-182 (435)
373 KOG3364 Membrane protein invol 89.2 3.5 7.5E-05 36.2 8.9 63 100-163 47-109 (149)
374 KOG0529 Protein geranylgeranyl 89.1 24 0.00051 37.1 16.4 28 142-169 46-73 (421)
375 PF15015 NYD-SP12_N: Spermatog 88.7 2.6 5.6E-05 43.9 9.2 94 126-227 177-288 (569)
376 PRK13184 pknD serine/threonine 87.5 17 0.00036 43.1 16.1 131 205-340 479-626 (932)
377 COG2912 Uncharacterized conser 87.4 8.5 0.00018 38.2 11.6 68 203-270 183-250 (269)
378 PF04053 Coatomer_WDAD: Coatom 87.3 5.7 0.00012 43.1 11.4 45 212-261 329-373 (443)
379 PF04053 Coatomer_WDAD: Coatom 87.0 7.9 0.00017 42.0 12.3 131 168-332 270-400 (443)
380 COG2912 Uncharacterized conser 86.9 4.8 0.0001 39.9 9.6 70 238-307 184-253 (269)
381 COG3629 DnrI DNA-binding trans 86.5 8.8 0.00019 38.6 11.3 65 234-298 152-216 (280)
382 PF10579 Rapsyn_N: Rapsyn N-te 86.3 8.5 0.00018 30.4 8.7 66 126-191 7-75 (80)
383 KOG0529 Protein geranylgeranyl 86.2 22 0.00047 37.4 14.2 141 176-316 46-196 (421)
384 PF10373 EST1_DNA_bind: Est1 D 86.1 2.3 4.9E-05 42.9 7.4 62 220-281 1-62 (278)
385 COG3629 DnrI DNA-binding trans 86.1 4.9 0.00011 40.3 9.4 64 125-188 153-216 (280)
386 PF10373 EST1_DNA_bind: Est1 D 85.5 2.9 6.3E-05 42.2 7.8 62 254-315 1-62 (278)
387 COG1747 Uncharacterized N-term 84.8 63 0.0014 35.0 20.7 61 126-188 100-160 (711)
388 COG5191 Uncharacterized conser 84.1 1.6 3.5E-05 43.6 4.8 77 200-276 106-183 (435)
389 PF11817 Foie-gras_1: Foie gra 84.0 11 0.00024 37.4 11.0 25 32-56 15-39 (247)
390 KOG2422 Uncharacterized conser 83.8 50 0.0011 36.3 15.9 160 101-267 251-451 (665)
391 PF12739 TRAPPC-Trs85: ER-Golg 83.8 52 0.0011 35.5 16.8 166 160-337 209-402 (414)
392 PF07721 TPR_4: Tetratricopept 83.3 1.4 3.1E-05 26.5 2.7 17 274-290 6-22 (26)
393 PF09670 Cas_Cas02710: CRISPR- 82.8 39 0.00084 35.9 15.1 63 126-188 132-198 (379)
394 COG1747 Uncharacterized N-term 82.8 77 0.0017 34.4 23.1 196 127-335 68-289 (711)
395 KOG4286 Dystrophin-like protei 82.6 1.4 3E-05 48.9 4.0 151 463-625 472-640 (966)
396 PF11207 DUF2989: Protein of u 82.6 10 0.00022 36.0 9.2 55 200-255 140-198 (203)
397 PF07721 TPR_4: Tetratricopept 82.4 1.8 3.9E-05 26.1 2.8 22 203-224 3-24 (26)
398 COG4941 Predicted RNA polymera 82.3 63 0.0014 33.1 16.2 179 141-338 212-398 (415)
399 PF07720 TPR_3: Tetratricopept 81.6 5 0.00011 26.5 4.9 19 273-291 5-23 (36)
400 COG4455 ImpE Protein of avirul 81.1 52 0.0011 31.7 13.1 60 209-268 9-68 (273)
401 PF07720 TPR_3: Tetratricopept 80.6 6.3 0.00014 26.0 5.2 30 127-156 3-34 (36)
402 PF10516 SHNi-TPR: SHNi-TPR; 80.0 3.1 6.7E-05 27.8 3.5 26 238-263 4-29 (38)
403 PF10516 SHNi-TPR: SHNi-TPR; 79.6 3.4 7.4E-05 27.6 3.7 29 161-189 3-31 (38)
404 KOG2581 26S proteasome regulat 79.1 90 0.0019 32.9 19.5 134 98-235 136-281 (493)
405 PF00244 14-3-3: 14-3-3 protei 78.7 67 0.0014 31.6 14.2 60 128-187 4-65 (236)
406 PF10255 Paf67: RNA polymerase 78.5 87 0.0019 33.4 15.6 61 237-298 124-193 (404)
407 PF11817 Foie-gras_1: Foie gra 77.8 24 0.00051 35.0 10.8 86 140-227 153-244 (247)
408 KOG4014 Uncharacterized conser 77.5 62 0.0013 30.2 16.5 171 99-299 46-234 (248)
409 TIGR03504 FimV_Cterm FimV C-te 77.5 5.8 0.00012 27.5 4.4 24 307-332 3-26 (44)
410 KOG0546 HSP90 co-chaperone CPR 77.1 3 6.4E-05 42.7 4.1 66 241-306 281-346 (372)
411 PHA02537 M terminase endonucle 76.8 32 0.00069 33.5 10.9 35 319-353 192-226 (230)
412 COG3014 Uncharacterized protei 76.6 60 0.0013 33.3 12.8 31 200-230 124-154 (449)
413 KOG0686 COP9 signalosome, subu 76.5 40 0.00086 35.4 11.9 89 100-188 122-216 (466)
414 PF09670 Cas_Cas02710: CRISPR- 76.3 67 0.0015 34.1 14.4 64 90-154 133-198 (379)
415 KOG0276 Vesicle coat complex C 76.0 34 0.00073 37.8 11.6 79 98-188 617-695 (794)
416 PF04348 LppC: LppC putative l 74.7 0.97 2.1E-05 50.3 0.0 183 107-304 7-200 (536)
417 COG3947 Response regulator con 71.8 45 0.00098 33.5 10.5 53 208-260 286-338 (361)
418 COG4455 ImpE Protein of avirul 71.8 99 0.0022 29.9 13.3 96 242-337 8-118 (273)
419 KOG0546 HSP90 co-chaperone CPR 70.7 6 0.00013 40.5 4.5 120 204-340 225-344 (372)
420 smart00386 HAT HAT (Half-A-TPR 70.5 12 0.00025 23.1 4.5 23 252-274 4-26 (33)
421 COG3947 Response regulator con 70.2 22 0.00048 35.6 8.1 62 127-188 281-342 (361)
422 PF10255 Paf67: RNA polymerase 70.0 1.6E+02 0.0034 31.5 15.3 62 202-264 123-193 (404)
423 KOG0686 COP9 signalosome, subu 69.7 73 0.0016 33.6 11.9 97 200-296 149-256 (466)
424 PF00244 14-3-3: 14-3-3 protei 68.5 34 0.00074 33.6 9.3 165 162-334 4-198 (236)
425 KOG2114 Vacuolar assembly/sort 67.9 78 0.0017 36.5 12.6 204 96-334 342-550 (933)
426 PF04190 DUF410: Protein of un 67.4 1.4E+02 0.003 29.8 17.3 27 233-259 88-114 (260)
427 smart00386 HAT HAT (Half-A-TPR 67.4 14 0.00031 22.7 4.4 31 215-245 1-31 (33)
428 PRK11619 lytic murein transgly 65.9 2.5E+02 0.0054 32.2 24.6 123 208-333 248-374 (644)
429 PF12739 TRAPPC-Trs85: ER-Golg 65.2 2E+02 0.0044 30.9 17.5 159 128-300 211-401 (414)
430 COG5187 RPN7 26S proteasome re 64.3 1.2E+02 0.0026 30.5 11.6 138 34-192 82-225 (412)
431 TIGR03504 FimV_Cterm FimV C-te 64.2 12 0.00027 25.9 3.7 25 273-297 3-27 (44)
432 PRK11619 lytic murein transgly 64.1 2.7E+02 0.0059 32.0 21.6 185 127-333 281-467 (644)
433 KOG0687 26S proteasome regulat 63.4 1.3E+02 0.0027 30.9 11.8 103 160-264 105-210 (393)
434 KOG1493 Anaphase-promoting com 62.9 4.1 8.8E-05 31.5 1.2 21 592-623 22-42 (84)
435 KOG0687 26S proteasome regulat 62.7 1.9E+02 0.0041 29.7 17.4 105 122-231 101-211 (393)
436 PF13041 PPR_2: PPR repeat fam 62.1 37 0.00081 23.8 6.2 27 271-297 5-31 (50)
437 KOG0276 Vesicle coat complex C 61.8 40 0.00087 37.2 8.7 50 210-264 646-695 (794)
438 KOG1920 IkappaB kinase complex 61.0 1.4E+02 0.003 36.0 13.2 25 239-263 1003-1027(1265)
439 KOG2063 Vacuolar assembly/sort 60.8 1.8E+02 0.004 34.3 14.3 169 128-296 507-711 (877)
440 PRK00807 50S ribosomal protein 60.2 4.4 9.6E-05 29.3 0.9 38 591-628 2-47 (52)
441 PF12854 PPR_1: PPR repeat 59.6 22 0.00048 22.8 4.2 25 269-293 7-31 (34)
442 PF13041 PPR_2: PPR repeat fam 59.3 49 0.0011 23.1 6.4 28 237-264 5-32 (50)
443 PHA02537 M terminase endonucle 59.0 95 0.0021 30.3 10.1 25 131-155 89-113 (230)
444 PF09797 NatB_MDM20: N-acetylt 58.5 1.9E+02 0.0041 30.5 13.4 42 176-225 200-241 (365)
445 cd00730 rubredoxin Rubredoxin; 58.3 5.2 0.00011 28.6 1.0 28 591-619 2-41 (50)
446 PF12854 PPR_1: PPR repeat 57.2 28 0.0006 22.4 4.3 26 235-260 7-32 (34)
447 PF14206 Cys_rich_CPCC: Cystei 57.0 5.2 0.00011 31.6 0.9 55 591-648 2-69 (78)
448 KOG2114 Vacuolar assembly/sort 56.5 3E+02 0.0064 32.1 14.5 221 86-337 366-593 (933)
449 PF08626 TRAPPC9-Trs120: Trans 55.5 2.1E+02 0.0046 35.6 14.8 172 159-334 242-474 (1185)
450 COG4941 Predicted RNA polymera 55.4 2.6E+02 0.0056 28.9 13.5 131 136-275 267-405 (415)
451 PF00412 LIM: LIM domain; Int 55.0 3 6.6E-05 30.6 -0.7 49 572-621 7-56 (58)
452 KOG4322 Anaphase-promoting com 54.6 3E+02 0.0065 29.5 20.9 248 83-337 195-474 (482)
453 TIGR02710 CRISPR-associated pr 54.0 2.9E+02 0.0064 29.2 13.6 55 130-184 135-196 (380)
454 KOG2063 Vacuolar assembly/sort 54.0 3.1E+02 0.0067 32.5 14.7 167 161-333 506-712 (877)
455 PF09205 DUF1955: Domain of un 53.5 1E+02 0.0022 27.3 8.1 50 281-332 98-147 (161)
456 PF14863 Alkyl_sulf_dimr: Alky 53.1 49 0.0011 29.6 6.5 50 126-175 71-120 (141)
457 smart00299 CLH Clathrin heavy 51.9 1.7E+02 0.0036 25.7 14.5 37 136-172 18-54 (140)
458 TIGR02710 CRISPR-associated pr 51.9 3E+02 0.0064 29.2 13.0 60 164-226 135-196 (380)
459 KOG4521 Nuclear pore complex, 51.4 3.4E+02 0.0075 32.8 14.2 182 126-336 921-1134(1480)
460 PF10952 DUF2753: Protein of u 51.2 81 0.0018 27.4 7.1 59 239-297 5-78 (140)
461 KOG1279 Chromatin remodeling f 50.7 6.8 0.00015 42.7 0.9 63 582-650 193-260 (506)
462 PLN02964 phosphatidylserine de 50.0 32 0.0007 39.0 6.0 151 447-624 127-282 (644)
463 PF01535 PPR: PPR repeat; Int 49.7 26 0.00055 21.3 3.2 22 274-295 5-26 (31)
464 PF08655 DASH_Ask1: DASH compl 49.4 3.2 7E-05 31.5 -1.3 40 606-653 13-52 (66)
465 PF10952 DUF2753: Protein of u 48.6 1.6E+02 0.0035 25.6 8.4 66 162-227 4-76 (140)
466 PF11846 DUF3366: Domain of un 48.2 80 0.0017 29.8 7.8 32 269-300 144-175 (193)
467 PF13226 DUF4034: Domain of un 46.6 2.9E+02 0.0063 27.9 11.5 136 167-325 8-153 (277)
468 PF14929 TAF1_subA: TAF RNA Po 46.4 3.9E+02 0.0085 29.9 13.6 85 208-296 349-439 (547)
469 KOG4521 Nuclear pore complex, 46.1 5.6E+02 0.012 31.2 14.8 131 159-316 920-1067(1480)
470 PF14863 Alkyl_sulf_dimr: Alky 46.0 63 0.0014 28.9 6.1 44 239-282 74-117 (141)
471 COG1773 Rubredoxin [Energy pro 45.8 11 0.00024 27.4 1.1 30 590-620 3-44 (55)
472 KOG1497 COP9 signalosome, subu 45.7 3.5E+02 0.0077 27.7 18.1 102 159-261 103-210 (399)
473 COG5259 RSC8 RSC chromatin rem 45.7 12 0.00026 39.5 1.7 44 590-633 224-268 (531)
474 PRK12798 chemotaxis protein; R 45.6 4.1E+02 0.0089 28.4 22.2 181 158-348 111-300 (421)
475 cd02682 MIT_AAA_Arch MIT: doma 45.6 1.3E+02 0.0027 23.7 6.9 29 126-154 7-35 (75)
476 COG5536 BET4 Protein prenyltra 45.4 2.9E+02 0.0062 27.8 10.8 182 144-333 51-259 (328)
477 PF09205 DUF1955: Domain of un 45.4 1.4E+02 0.0029 26.5 7.7 56 134-189 95-150 (161)
478 KOG1920 IkappaB kinase complex 45.2 6.6E+02 0.014 30.7 18.4 85 202-297 940-1027(1265)
479 cd02679 MIT_spastin MIT: domai 44.8 42 0.00091 26.7 4.3 16 214-229 21-36 (79)
480 KOG4279 Serine/threonine prote 44.7 1.6E+02 0.0034 33.7 9.9 180 89-278 202-409 (1226)
481 PF08209 Sgf11: Sgf11 (transcr 44.6 9 0.0002 24.7 0.4 17 590-606 4-20 (33)
482 PF02591 DUF164: Putative zinc 43.8 7.2 0.00016 28.6 -0.2 30 590-619 22-53 (56)
483 cd02680 MIT_calpain7_2 MIT: do 43.6 41 0.00089 26.4 4.0 16 249-264 20-35 (75)
484 PF11846 DUF3366: Domain of un 43.1 84 0.0018 29.6 7.1 45 221-266 131-175 (193)
485 PF04348 LppC: LppC putative l 42.8 8.1 0.00018 43.1 0.0 157 144-316 8-177 (536)
486 cd02680 MIT_calpain7_2 MIT: do 42.6 50 0.0011 26.0 4.3 19 212-230 17-35 (75)
487 cd02682 MIT_AAA_Arch MIT: doma 42.3 1.3E+02 0.0027 23.7 6.5 29 201-229 6-34 (75)
488 COG3107 LppC Putative lipoprot 42.0 5.2E+02 0.011 28.6 13.8 183 103-306 42-240 (604)
489 PF12149 HSV_VP16_C: Herpes si 41.8 9.3 0.0002 23.0 0.1 9 559-567 14-22 (30)
490 COG5187 RPN7 26S proteasome re 41.8 3.9E+02 0.0084 27.1 17.4 120 105-229 92-220 (412)
491 KOG4322 Anaphase-promoting com 41.6 4.7E+02 0.01 28.0 16.6 178 122-301 270-474 (482)
492 TIGR00756 PPR pentatricopeptid 41.3 51 0.0011 20.3 3.8 26 272-297 3-28 (35)
493 smart00299 CLH Clathrin heavy 41.1 2.5E+02 0.0053 24.6 14.1 120 168-314 16-136 (140)
494 cd02679 MIT_spastin MIT: domai 40.9 42 0.00091 26.7 3.7 16 319-334 22-37 (79)
495 cd00350 rubredoxin_like Rubred 40.2 13 0.00028 23.9 0.7 24 591-620 2-25 (33)
496 PF08626 TRAPPC9-Trs120: Trans 39.6 4.6E+02 0.01 32.7 14.3 90 174-265 360-475 (1185)
497 TIGR00270 conserved hypothetic 39.3 15 0.00031 33.5 1.1 33 592-624 2-36 (154)
498 PRK12798 chemotaxis protein; R 39.2 5.1E+02 0.011 27.7 22.5 195 126-329 113-319 (421)
499 COG3357 Predicted transcriptio 38.6 17 0.00038 29.1 1.3 40 589-632 57-96 (97)
500 cd05026 S-100Z S-100Z: S-100Z 38.4 75 0.0016 26.0 5.1 72 494-565 4-80 (93)
No 1
>KOG4626 consensus O-linked N-acetylglucosamine transferase OGT [Carbohydrate transport and metabolism; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=100.00 E-value=2.3e-51 Score=419.53 Aligned_cols=551 Identities=15% Similarity=0.145 Sum_probs=392.2
Q ss_pred HhhhcCCcchhhccCchHHHHhccCchhhHHHHHHHHHHHHhhccCCcCCchHHhhhHHHHH---------------HhC
Q 006120 18 SQKKQRTAAWAVSPNHGIVFDDTWKIVDDLEILVKRLKAKQAKDGKLKGDNSDAFSDAGWSR---------------ELG 82 (660)
Q Consensus 18 ~~~~~~p~~~~~~~~lg~~y~~~~~~~~al~~~~~~~~~a~~~~~~l~~~~~~a~~~~~~~~---------------~l~ 82 (660)
.-.+.+|-..++|.|+|.++-+.|++.+++..+..+++ +.+++.+++..++..+ .+.
T Consensus 107 ~a~r~~~q~ae~ysn~aN~~kerg~~~~al~~y~~aie--------l~p~fida~inla~al~~~~~~~~a~~~~~~alq 178 (966)
T KOG4626|consen 107 LAIRKNPQGAEAYSNLANILKERGQLQDALALYRAAIE--------LKPKFIDAYINLAAALVTQGDLELAVQCFFEALQ 178 (966)
T ss_pred hhhhccchHHHHHHHHHHHHHHhchHHHHHHHHHHHHh--------cCchhhHHHhhHHHHHHhcCCCcccHHHHHHHHh
Confidence 34566888899999999999999999999999999988 6777777776665443 334
Q ss_pred CchHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHhhccCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHH
Q 006120 83 TSAEISEKRVFWEESTHDYAVFVKELGVLRNRADGARSREEAFDGHMAIGRVLYEHQLFKEALVSFKRACELQPTDVRPH 162 (660)
Q Consensus 83 ~~~~~~~~~~~l~~~~~~~g~~~~Al~~l~~a~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~ 162 (660)
..|....+...+|.+....|...+|-..|.+++...+.. +.+|.++|.++..+|+...|+..|+++++++|+.++++
T Consensus 179 lnP~l~ca~s~lgnLlka~Grl~ea~~cYlkAi~~qp~f---AiawsnLg~~f~~~Gei~~aiq~y~eAvkldP~f~dAY 255 (966)
T KOG4626|consen 179 LNPDLYCARSDLGNLLKAEGRLEEAKACYLKAIETQPCF---AIAWSNLGCVFNAQGEIWLAIQHYEEAVKLDPNFLDAY 255 (966)
T ss_pred cCcchhhhhcchhHHHHhhcccchhHHHHHHHHhhCCce---eeeehhcchHHhhcchHHHHHHHHHHhhcCCCcchHHH
Confidence 466666777777888888888888888888888765533 47788888888888888888888888888888888888
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHHhccCCCchhchHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCcHHHHHHHH
Q 006120 163 FRAGNCLYVLGRYREAKEEYLLALEAAETGGNQWAYLLPQIYVNLGIALEGEGMVLSACEYYRESAILCPTHFRALKLLG 242 (660)
Q Consensus 163 ~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg 242 (660)
++||++|...+.+++|+.+|.+|+.+.|. .+.++.++|.+|..+|..+-|+..|++++++.|..++++.++|
T Consensus 256 iNLGnV~ke~~~~d~Avs~Y~rAl~lrpn--------~A~a~gNla~iYyeqG~ldlAI~~Ykral~~~P~F~~Ay~Nla 327 (966)
T KOG4626|consen 256 INLGNVYKEARIFDRAVSCYLRALNLRPN--------HAVAHGNLACIYYEQGLLDLAIDTYKRALELQPNFPDAYNNLA 327 (966)
T ss_pred hhHHHHHHHHhcchHHHHHHHHHHhcCCc--------chhhccceEEEEeccccHHHHHHHHHHHHhcCCCchHHHhHHH
Confidence 88888888888888888888888888888 7888888888888888888888888888888888888888888
Q ss_pred HHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhCCChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCCCHH
Q 006120 243 SALFGVGEYRAAVKALEEAIFIKPDYADAHCDLASALHAMGEDERAIEVFQKAIDLKPGHVDALYNLGGLYMDLGAGETE 322 (660)
Q Consensus 243 ~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~La~~~~~~~~g~~~ 322 (660)
..+...|+..+|+.+|.+++.+.|+.+++.+|||.+|.++|++++|...|.++++..|..+.++.+||.+|.++ |+++
T Consensus 328 nALkd~G~V~ea~~cYnkaL~l~p~hadam~NLgni~~E~~~~e~A~~ly~~al~v~p~~aaa~nNLa~i~kqq--gnl~ 405 (966)
T KOG4626|consen 328 NALKDKGSVTEAVDCYNKALRLCPNHADAMNNLGNIYREQGKIEEATRLYLKALEVFPEFAAAHNNLASIYKQQ--GNLD 405 (966)
T ss_pred HHHHhccchHHHHHHHHHHHHhCCccHHHHHHHHHHHHHhccchHHHHHHHHHHhhChhhhhhhhhHHHHHHhc--ccHH
Confidence 88888888888888888888888888888888888888888888888888888888888888888888888877 8888
Q ss_pred HHHHHHHHHHcccCCh-hHHHHHHHHHH-------HHHHhccCCCCCCCCCCccccCcchHHhhchhhhhhhhHHHHhcC
Q 006120 323 EAKKALKEALKMTNRV-ELHDAVSHLKQ-------LQKKKSKGNRGTNGEGGFDIVEPSKFKTVGERTTVRQDLANALEI 394 (660)
Q Consensus 323 eA~~~~~~al~l~p~~-~~~~~~~~l~~-------l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~al~~ 394 (660)
+|+.+|++++++.|.. +....++.-.+ ......++....+...+...-.++++...|+...|...|..+|.+
T Consensus 406 ~Ai~~YkealrI~P~fAda~~NmGnt~ke~g~v~~A~q~y~rAI~~nPt~AeAhsNLasi~kDsGni~~AI~sY~~aLkl 485 (966)
T KOG4626|consen 406 DAIMCYKEALRIKPTFADALSNMGNTYKEMGDVSAAIQCYTRAIQINPTFAEAHSNLASIYKDSGNIPEAIQSYRTALKL 485 (966)
T ss_pred HHHHHHHHHHhcCchHHHHHHhcchHHHHhhhHHHHHHHHHHHHhcCcHHHHHHhhHHHHhhccCCcHHHHHHHHHHHcc
Confidence 8888888888888762 22222222111 111111222222222233333456677778888888999999886
Q ss_pred HHHHH-------HHHHhccCHHHHHH-----------Hhh-------CCCcccccc------------------------
Q 006120 395 RAFQK-------ITRLSRCDVELLKK-----------EMS-------ETDVPVSYS------------------------ 425 (660)
Q Consensus 395 ~~~~~-------~~~~~~~~~~~~~~-----------~l~-------~~~~~~~~~------------------------ 425 (660)
++... ..-...|+|....+ ++. .|.....++
T Consensus 486 kPDfpdA~cNllh~lq~vcdw~D~d~~~~kl~sivrdql~~~rlpsvhP~hsm~ypl~~~~~~aia~k~a~~c~~~~~~~ 565 (966)
T KOG4626|consen 486 KPDFPDAYCNLLHCLQIVCDWTDYDKRMKKLVSIVRDQLEKNRLPSVHPHHSMLYPLSHILRKAIAAKHANLCLDKVHVL 565 (966)
T ss_pred CCCCchhhhHHHHHHHHHhcccchHHHHHHHHHHHHHHHhhhcCCccCcccccccccchHHHHHHHHHHhhhhHHHHHhc
Confidence 64311 11111233333222 221 111000000
Q ss_pred -CCCC-CCCCccCcchHHHHHhhhccCCCcchHHHHHHHHHHhhhhccCCCcccccchhhhhhhcccCCCCHHHHHHhhh
Q 006120 426 -GGGG-PQKSIRKPNLEEILRKFLHFLKPETFQGAVKAINERILSVLDETGSARVDLGMFYAILAPICSGSPEKRKRVAF 503 (660)
Q Consensus 426 -~~~~-~~~~ir~~~~~~~~~~~iGY~S~df~~H~v~~l~~~~l~~hDr~g~~~fev~~y~~~~~~~~~~~~~~r~r~~~ 503 (660)
.+.. ..+.+.. +..|+||||||+||.+||++|||++++.+|||+ +|||++| ++.++++..+|.++-...
T Consensus 566 ~k~pyth~~~l~~----~~~rlrIGYvSsDFgnHp~Shlmqsv~gmHdr~---kveVfcY--als~~d~t~fR~kv~~e~ 636 (966)
T KOG4626|consen 566 GKPPYTHPDNLKV----KEGRLRIGYVSSDFGNHPTSHLMQSVPGMHDRS---KVEVFCY--ALSVNDGTNFRDKVMKEA 636 (966)
T ss_pred cCCCCCChhhCCC----CcCceEEEeecccccCCchHHHhccCcCcCCcc---ceEEEEE--EeecCCCchHHHHHHhhc
Confidence 0000 0111111 112344999999999999999999999999999 9999999 889999999999999999
Q ss_pred hhhcccccCCCC----ccchhccHHHHHHHhHHHhccCCCchhhhhhhcc-CCCcccchhHHhhh---------ccC---
Q 006120 504 DALLWRPVNEGS----TQVRKVDAVRYIKLLRAVYIPSHGVSEMMEVHGE-ADSSMVSLSEFLVM---------FDD--- 566 (660)
Q Consensus 504 d~~~~~~~~~~~----a~~i~~D~~~~l~dL~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~---------~~~--- 566 (660)
+ +|.+++..+ |.+|+.|.|+||+.|- |.|.|.+. |+.+- +.+.+|+|.+|+.+ .||
T Consensus 637 e--hf~Dls~i~~~kiA~~I~qD~I~ILvnln---GyTkgarn--eifAlrPAPIQv~wlGyPgTtGa~~mDYiITDs~t 709 (966)
T KOG4626|consen 637 E--HFVDLSQIPCNKIADKIRQDKIHILVNLN---GYTKGARN--EIFALRPAPIQVMWLGYPGTTGATFMDYIITDSVT 709 (966)
T ss_pred c--ceeehhcCChHHHHHHHhhcCceEEEecc---cccccccc--ceeeccCCceeEEeecCCCCCCCceeeEEeecccC
Confidence 9 777777766 9999999999999885 56666654 43331 23333333332222 122
Q ss_pred --CCCcchhhhhhhhcc----cCcccc--------CCCccccccccccccccc
Q 006120 567 --PDWGFGIMSTLMKLE----AGDRNR--------HGRHVCSVCRYPIIGSRF 605 (660)
Q Consensus 567 --~~~~~~~~~~~~~~~----~~~~~~--------~~~~~~~~~~~~~~~~~~ 605 (660)
+++...-.+.||.|. -||..- |++|+|+.=.+|.+--=|
T Consensus 710 sPl~~a~~ysEkLv~lPh~ffi~d~~qk~~~~~dpn~kP~r~~y~Lp~d~vvf 762 (966)
T KOG4626|consen 710 SPLELAQQYSEKLVYLPHCFFIGDHKQKNQDVLDPNNKPTRSQYGLPEDAVVF 762 (966)
T ss_pred ChHHHHHHHHHHHhhCCceEEecCcccccccccCCCCCCCCCCCCCCCCeEEE
Confidence 122222333344332 366655 788999999988764433
No 2
>KOG4626 consensus O-linked N-acetylglucosamine transferase OGT [Carbohydrate transport and metabolism; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=100.00 E-value=1.3e-31 Score=275.16 Aligned_cols=277 Identities=24% Similarity=0.305 Sum_probs=252.4
Q ss_pred hcCCcchhhccCchHHHHhccCchhhHHHHHHHHHHHHhhccCCcCCchHHhhhHHHHHHhCCchHHHHhHHHHHHHHHH
Q 006120 21 KQRTAAWAVSPNHGIVFDDTWKIVDDLEILVKRLKAKQAKDGKLKGDNSDAFSDAGWSRELGTSAEISEKRVFWEESTHD 100 (660)
Q Consensus 21 ~~~p~~~~~~~~lg~~y~~~~~~~~al~~~~~~~~~a~~~~~~l~~~~~~a~~~~~~~~~l~~~~~~~~~~~~l~~~~~~ 100 (660)
+..|..+-+|.|||-++..+|.+..++..++++++ ++ |....+++.+|.++.+
T Consensus 212 ~~qp~fAiawsnLg~~f~~~Gei~~aiq~y~eAvk--------ld-------------------P~f~dAYiNLGnV~ke 264 (966)
T KOG4626|consen 212 ETQPCFAIAWSNLGCVFNAQGEIWLAIQHYEEAVK--------LD-------------------PNFLDAYINLGNVYKE 264 (966)
T ss_pred hhCCceeeeehhcchHHhhcchHHHHHHHHHHhhc--------CC-------------------CcchHHHhhHHHHHHH
Confidence 34555556666666666666666666666655555 34 4445566778999999
Q ss_pred HHHHHHHHHHHHHHHhhccCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHH
Q 006120 101 YAVFVKELGVLRNRADGARSREEAFDGHMAIGRVLYEHQLFKEALVSFKRACELQPTDVRPHFRAGNCLYVLGRYREAKE 180 (660)
Q Consensus 101 ~g~~~~Al~~l~~a~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~ 180 (660)
.+.|++|+..|.+++...++. +.++-++|.+|+++|..+-|+..|+++++..|+.++++.++|+++...|+..+|..
T Consensus 265 ~~~~d~Avs~Y~rAl~lrpn~---A~a~gNla~iYyeqG~ldlAI~~Ykral~~~P~F~~Ay~NlanALkd~G~V~ea~~ 341 (966)
T KOG4626|consen 265 ARIFDRAVSCYLRALNLRPNH---AVAHGNLACIYYEQGLLDLAIDTYKRALELQPNFPDAYNNLANALKDKGSVTEAVD 341 (966)
T ss_pred HhcchHHHHHHHHHHhcCCcc---hhhccceEEEEeccccHHHHHHHHHHHHhcCCCchHHHhHHHHHHHhccchHHHHH
Confidence 999999999999999877765 48899999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHhccCCCchhchHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHCCCHHHHHHHHHH
Q 006120 181 EYLLALEAAETGGNQWAYLLPQIYVNLGIALEGEGMVLSACEYYRESAILCPTHFRALKLLGSALFGVGEYRAAVKALEE 260 (660)
Q Consensus 181 ~~~~al~~~p~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~ 260 (660)
+|.+++.+.|+ .+.+.++||.++..+|.+++|...|+++++..|..+.++.+||.+|.++|++++|+.+|++
T Consensus 342 cYnkaL~l~p~--------hadam~NLgni~~E~~~~e~A~~ly~~al~v~p~~aaa~nNLa~i~kqqgnl~~Ai~~Yke 413 (966)
T KOG4626|consen 342 CYNKALRLCPN--------HADAMNNLGNIYREQGKIEEATRLYLKALEVFPEFAAAHNNLASIYKQQGNLDDAIMCYKE 413 (966)
T ss_pred HHHHHHHhCCc--------cHHHHHHHHHHHHHhccchHHHHHHHHHHhhChhhhhhhhhHHHHHHhcccHHHHHHHHHH
Confidence 99999999999 8999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHhCCCCHHHHHHHHHHHHhCCChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHcccCC
Q 006120 261 AIFIKPDYADAHCDLASALHAMGEDERAIEVFQKAIDLKPGHVDALYNLGGLYMDLGAGETEEAKKALKEALKMTNR 337 (660)
Q Consensus 261 al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~La~~~~~~~~g~~~eA~~~~~~al~l~p~ 337 (660)
++.+.|..++++.|+|..|..+|+.+.|+.+|.+|+.++|..++++.+||.+|... |+..+|+..|+.++++.|+
T Consensus 414 alrI~P~fAda~~NmGnt~ke~g~v~~A~q~y~rAI~~nPt~AeAhsNLasi~kDs--Gni~~AI~sY~~aLklkPD 488 (966)
T KOG4626|consen 414 ALRIKPTFADALSNMGNTYKEMGDVSAAIQCYTRAIQINPTFAEAHSNLASIYKDS--GNIPEAIQSYRTALKLKPD 488 (966)
T ss_pred HHhcCchHHHHHHhcchHHHHhhhHHHHHHHHHHHHhcCcHHHHHHhhHHHHhhcc--CCcHHHHHHHHHHHccCCC
Confidence 99999999999999999999999999999999999999999999999999999998 9999999999999999987
No 3
>TIGR00990 3a0801s09 mitochondrial precursor proteins import receptor (72 kDa mitochondrial outermembrane protein) (mitochondrial import receptor for the ADP/ATP carrier) (translocase of outermembrane tom70).
Probab=99.93 E-value=5.4e-23 Score=233.02 Aligned_cols=191 Identities=19% Similarity=0.183 Sum_probs=101.6
Q ss_pred HHHHHHHHHHHHHhhccCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHH
Q 006120 103 VFVKELGVLRNRADGARSREEAFDGHMAIGRVLYEHQLFKEALVSFKRACELQPTDVRPHFRAGNCLYVLGRYREAKEEY 182 (660)
Q Consensus 103 ~~~~Al~~l~~a~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~ 182 (660)
.+++|+..++++++.....+....++..+|.++..+|++++|+..|+++++++|....++..+|.++...|++++|+..+
T Consensus 309 ~y~~A~~~~~~al~~~~~~~~~a~a~~~lg~~~~~~g~~~eA~~~~~kal~l~P~~~~~~~~la~~~~~~g~~~eA~~~~ 388 (615)
T TIGR00990 309 SYEEAARAFEKALDLGKLGEKEAIALNLRGTFKCLKGKHLEALADLSKSIELDPRVTQSYIKRASMNLELGDPDKAEEDF 388 (615)
T ss_pred hHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHCCCHHHHHHHH
Confidence 44455555555544433333344445555555555555555555555555555555555555555555555555555555
Q ss_pred HHHHHHhccCCCchhchHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHH
Q 006120 183 LLALEAAETGGNQWAYLLPQIYVNLGIALEGEGMVLSACEYYRESAILCPTHFRALKLLGSALFGVGEYRAAVKALEEAI 262 (660)
Q Consensus 183 ~~al~~~p~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al 262 (660)
+++++.+|. .+.+++.+|.++...|++++|+.+|++++.++|++..++.++|.++..+|++++|+..+++++
T Consensus 389 ~~al~~~p~--------~~~~~~~lg~~~~~~g~~~~A~~~~~kal~l~P~~~~~~~~la~~~~~~g~~~eA~~~~~~al 460 (615)
T TIGR00990 389 DKALKLNSE--------DPDIYYHRAQLHFIKGEFAQAGKDYQKSIDLDPDFIFSHIQLGVTQYKEGSIASSMATFRRCK 460 (615)
T ss_pred HHHHHhCCC--------CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCccCHHHHHHHHHHHHHCCCHHHHHHHHHHHH
Confidence 555555554 444555555555555555555555555555555555555555555555555555555555555
Q ss_pred HhCCCCHHHHHHHHHHHHhCCChHHHHHHHHHHHHhCCC
Q 006120 263 FIKPDYADAHCDLASALHAMGEDERAIEVFQKAIDLKPG 301 (660)
Q Consensus 263 ~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~ 301 (660)
...|+++.++..+|.++..+|++++|+..|++++++.|.
T Consensus 461 ~~~P~~~~~~~~lg~~~~~~g~~~~A~~~~~~Al~l~p~ 499 (615)
T TIGR00990 461 KNFPEAPDVYNYYGELLLDQNKFDEAIEKFDTAIELEKE 499 (615)
T ss_pred HhCCCChHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCc
Confidence 555555555555555555555555555555555555544
No 4
>PRK15174 Vi polysaccharide export protein VexE; Provisional
Probab=99.92 E-value=1.2e-22 Score=229.84 Aligned_cols=284 Identities=12% Similarity=-0.010 Sum_probs=251.3
Q ss_pred HhhHhhhcCCcchhhccCchHHHHhccCchhhHHHHHHHHHHHHhhccCCcCCchHHhhhHHHHHHhCCchHHHHhHHHH
Q 006120 15 AIESQKKQRTAAWAVSPNHGIVFDDTWKIVDDLEILVKRLKAKQAKDGKLKGDNSDAFSDAGWSRELGTSAEISEKRVFW 94 (660)
Q Consensus 15 ~~~~~~~~~p~~~~~~~~lg~~y~~~~~~~~al~~~~~~~~~a~~~~~~l~~~~~~a~~~~~~~~~l~~~~~~~~~~~~l 94 (660)
+........|....+++++|......|++.++++.+.+.++ ..|+... .+..+
T Consensus 64 l~~~~l~~~p~~~~~l~~l~~~~l~~g~~~~A~~~l~~~l~--------~~P~~~~-------------------a~~~l 116 (656)
T PRK15174 64 LLSDRVLTAKNGRDLLRRWVISPLASSQPDAVLQVVNKLLA--------VNVCQPE-------------------DVLLV 116 (656)
T ss_pred HhHHHHHhCCCchhHHHHHhhhHhhcCCHHHHHHHHHHHHH--------hCCCChH-------------------HHHHH
Confidence 35667778999999999999999999999999999999888 3444433 34556
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhccCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCC
Q 006120 95 EESTHDYAVFVKELGVLRNRADGARSREEAFDGHMAIGRVLYEHQLFKEALVSFKRACELQPTDVRPHFRAGNCLYVLGR 174 (660)
Q Consensus 95 ~~~~~~~g~~~~Al~~l~~a~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~ 174 (660)
+.++...|++.+|+..+++++...+... .++..+|.++...|++++|+..+++++...|+.+.++..++ .+...|+
T Consensus 117 a~~l~~~g~~~~Ai~~l~~Al~l~P~~~---~a~~~la~~l~~~g~~~eA~~~~~~~~~~~P~~~~a~~~~~-~l~~~g~ 192 (656)
T PRK15174 117 ASVLLKSKQYATVADLAEQAWLAFSGNS---QIFALHLRTLVLMDKELQAISLARTQAQEVPPRGDMIATCL-SFLNKSR 192 (656)
T ss_pred HHHHHHcCCHHHHHHHHHHHHHhCCCcH---HHHHHHHHHHHHCCChHHHHHHHHHHHHhCCCCHHHHHHHH-HHHHcCC
Confidence 7788899999999999999999877665 67889999999999999999999999999999988887764 4888999
Q ss_pred HHHHHHHHHHHHHHhccCCCchhchHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHCCCHHH-
Q 006120 175 YREAKEEYLLALEAAETGGNQWAYLLPQIYVNLGIALEGEGMVLSACEYYRESAILCPTHFRALKLLGSALFGVGEYRA- 253 (660)
Q Consensus 175 ~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~- 253 (660)
+++|+..++++++..|.. .......++.++...|++++|+..++++++..|+++.++..+|.++...|++++
T Consensus 193 ~~eA~~~~~~~l~~~~~~-------~~~~~~~l~~~l~~~g~~~eA~~~~~~al~~~p~~~~~~~~Lg~~l~~~G~~~eA 265 (656)
T PRK15174 193 LPEDHDLARALLPFFALE-------RQESAGLAVDTLCAVGKYQEAIQTGESALARGLDGAALRRSLGLAYYQSGRSREA 265 (656)
T ss_pred HHHHHHHHHHHHhcCCCc-------chhHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCchhh
Confidence 999999999998887642 223445678889999999999999999999999999999999999999999986
Q ss_pred ---HHHHHHHHHHhCCCCHHHHHHHHHHHHhCCChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCCCHHHHHHHHHH
Q 006120 254 ---AVKALEEAIFIKPDYADAHCDLASALHAMGEDERAIEVFQKAIDLKPGHVDALYNLGGLYMDLGAGETEEAKKALKE 330 (660)
Q Consensus 254 ---A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~La~~~~~~~~g~~~eA~~~~~~ 330 (660)
|+..|+++++++|+++.++.++|.++..+|++++|+..++++++++|+++.++..+|.++... |++++|+..|++
T Consensus 266 ~~~A~~~~~~Al~l~P~~~~a~~~lg~~l~~~g~~~eA~~~l~~al~l~P~~~~a~~~La~~l~~~--G~~~eA~~~l~~ 343 (656)
T PRK15174 266 KLQAAEHWRHALQFNSDNVRIVTLYADALIRTGQNEKAIPLLQQSLATHPDLPYVRAMYARALRQV--GQYTAASDEFVQ 343 (656)
T ss_pred HHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHC--CCHHHHHHHHHH
Confidence 899999999999999999999999999999999999999999999999999999999999998 999999999999
Q ss_pred HHcccCCh
Q 006120 331 ALKMTNRV 338 (660)
Q Consensus 331 al~l~p~~ 338 (660)
++..+|..
T Consensus 344 al~~~P~~ 351 (656)
T PRK15174 344 LAREKGVT 351 (656)
T ss_pred HHHhCccc
Confidence 99998874
No 5
>TIGR00990 3a0801s09 mitochondrial precursor proteins import receptor (72 kDa mitochondrial outermembrane protein) (mitochondrial import receptor for the ADP/ATP carrier) (translocase of outermembrane tom70).
Probab=99.92 E-value=6.1e-22 Score=224.44 Aligned_cols=241 Identities=15% Similarity=0.167 Sum_probs=220.4
Q ss_pred chHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHhhccCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHH
Q 006120 84 SAEISEKRVFWEESTHDYAVFVKELGVLRNRADGARSREEAFDGHMAIGRVLYEHQLFKEALVSFKRACELQPTDVRPHF 163 (660)
Q Consensus 84 ~~~~~~~~~~l~~~~~~~g~~~~Al~~l~~a~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~ 163 (660)
.+.....+..++.++...|++++|+..+++++...+... .++..+|.++...|++++|+..|+++++.+|+++.+++
T Consensus 327 ~~~~a~a~~~lg~~~~~~g~~~eA~~~~~kal~l~P~~~---~~~~~la~~~~~~g~~~eA~~~~~~al~~~p~~~~~~~ 403 (615)
T TIGR00990 327 GEKEAIALNLRGTFKCLKGKHLEALADLSKSIELDPRVT---QSYIKRASMNLELGDPDKAEEDFDKALKLNSEDPDIYY 403 (615)
T ss_pred ChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCcH---HHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHH
Confidence 355556778888899999999999999999999877654 78899999999999999999999999999999999999
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHHHhccCCCchhchHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCcHHHHHHHHH
Q 006120 164 RAGNCLYVLGRYREAKEEYLLALEAAETGGNQWAYLLPQIYVNLGIALEGEGMVLSACEYYRESAILCPTHFRALKLLGS 243 (660)
Q Consensus 164 ~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~ 243 (660)
.+|.++...|++++|+..|+++++++|+ ...++..+|.++..+|++++|+..+++++...|+++.++..+|.
T Consensus 404 ~lg~~~~~~g~~~~A~~~~~kal~l~P~--------~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~P~~~~~~~~lg~ 475 (615)
T TIGR00990 404 HRAQLHFIKGEFAQAGKDYQKSIDLDPD--------FIFSHIQLGVTQYKEGSIASSMATFRRCKKNFPEAPDVYNYYGE 475 (615)
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHcCcc--------CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCChHHHHHHHH
Confidence 9999999999999999999999999998 77889999999999999999999999999999999999999999
Q ss_pred HHHHCCCHHHHHHHHHHHHHhCCCCHHH------HHHHHH-HHHhCCChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHh
Q 006120 244 ALFGVGEYRAAVKALEEAIFIKPDYADA------HCDLAS-ALHAMGEDERAIEVFQKAIDLKPGHVDALYNLGGLYMDL 316 (660)
Q Consensus 244 ~~~~~g~~~~A~~~~~~al~~~p~~~~~------~~~la~-~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~La~~~~~~ 316 (660)
++...|++++|+..|++++.+.|+.... +.+.+. ++...|++++|+..+++++.++|++..++..+|.++..+
T Consensus 476 ~~~~~g~~~~A~~~~~~Al~l~p~~~~~~~~~~~l~~~a~~~~~~~~~~~eA~~~~~kAl~l~p~~~~a~~~la~~~~~~ 555 (615)
T TIGR00990 476 LLLDQNKFDEAIEKFDTAIELEKETKPMYMNVLPLINKALALFQWKQDFIEAENLCEKALIIDPECDIAVATMAQLLLQQ 555 (615)
T ss_pred HHHHccCHHHHHHHHHHHHhcCCccccccccHHHHHHHHHHHHHHhhhHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHc
Confidence 9999999999999999999999875332 233333 334579999999999999999999999999999999999
Q ss_pred cCCCHHHHHHHHHHHHcccCC
Q 006120 317 GAGETEEAKKALKEALKMTNR 337 (660)
Q Consensus 317 ~~g~~~eA~~~~~~al~l~p~ 337 (660)
|++++|+.+|++++++.+.
T Consensus 556 --g~~~eAi~~~e~A~~l~~~ 574 (615)
T TIGR00990 556 --GDVDEALKLFERAAELART 574 (615)
T ss_pred --cCHHHHHHHHHHHHHHhcc
Confidence 9999999999999999876
No 6
>PRK15174 Vi polysaccharide export protein VexE; Provisional
Probab=99.91 E-value=2.5e-21 Score=219.13 Aligned_cols=297 Identities=14% Similarity=0.097 Sum_probs=257.2
Q ss_pred hhHhhhcCCcchhhccCchHHHHhccCchhhHHHHHHHHHHHHhhccCCcCCchHHhhhHHHHHHhCCchHHHHhHHHHH
Q 006120 16 IESQKKQRTAAWAVSPNHGIVFDDTWKIVDDLEILVKRLKAKQAKDGKLKGDNSDAFSDAGWSRELGTSAEISEKRVFWE 95 (660)
Q Consensus 16 ~~~~~~~~p~~~~~~~~lg~~y~~~~~~~~al~~~~~~~~~a~~~~~~l~~~~~~a~~~~~~~~~l~~~~~~~~~~~~l~ 95 (660)
.+.-...+|....++..+|.++...|++.+|++.+.++++ +.|... ..+..++
T Consensus 99 l~~~l~~~P~~~~a~~~la~~l~~~g~~~~Ai~~l~~Al~--------l~P~~~-------------------~a~~~la 151 (656)
T PRK15174 99 VNKLLAVNVCQPEDVLLVASVLLKSKQYATVADLAEQAWL--------AFSGNS-------------------QIFALHL 151 (656)
T ss_pred HHHHHHhCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHH--------hCCCcH-------------------HHHHHHH
Confidence 3445567899999999999999999999999999999998 344432 3344557
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhccCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHcCC
Q 006120 96 ESTHDYAVFVKELGVLRNRADGARSREEAFDGHMAIGRVLYEHQLFKEALVSFKRACELQPT-DVRPHFRAGNCLYVLGR 174 (660)
Q Consensus 96 ~~~~~~g~~~~Al~~l~~a~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~~la~~~~~~g~ 174 (660)
.++...|++++|+..+++.....+.++. .+..++ .+...|++++|+..++++++..|. .......++.++...|+
T Consensus 152 ~~l~~~g~~~eA~~~~~~~~~~~P~~~~---a~~~~~-~l~~~g~~~eA~~~~~~~l~~~~~~~~~~~~~l~~~l~~~g~ 227 (656)
T PRK15174 152 RTLVLMDKELQAISLARTQAQEVPPRGD---MIATCL-SFLNKSRLPEDHDLARALLPFFALERQESAGLAVDTLCAVGK 227 (656)
T ss_pred HHHHHCCChHHHHHHHHHHHHhCCCCHH---HHHHHH-HHHHcCCHHHHHHHHHHHHhcCCCcchhHHHHHHHHHHHCCC
Confidence 7889999999999999988888777653 444443 478899999999999999998763 34455667889999999
Q ss_pred HHHHHHHHHHHHHHhccCCCchhchHHHHHHHHHHHHHHCCCHHH----HHHHHHHHHHhCCCcHHHHHHHHHHHHHCCC
Q 006120 175 YREAKEEYLLALEAAETGGNQWAYLLPQIYVNLGIALEGEGMVLS----ACEYYRESAILCPTHFRALKLLGSALFGVGE 250 (660)
Q Consensus 175 ~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~la~~~~~~g~~~~----A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~ 250 (660)
+++|+..++++++..|. .+.++..+|.++...|++++ |+..|+++++++|+++.++..+|.++...|+
T Consensus 228 ~~eA~~~~~~al~~~p~--------~~~~~~~Lg~~l~~~G~~~eA~~~A~~~~~~Al~l~P~~~~a~~~lg~~l~~~g~ 299 (656)
T PRK15174 228 YQEAIQTGESALARGLD--------GAALRRSLGLAYYQSGRSREAKLQAAEHWRHALQFNSDNVRIVTLYADALIRTGQ 299 (656)
T ss_pred HHHHHHHHHHHHhcCCC--------CHHHHHHHHHHHHHcCCchhhHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHCCC
Confidence 99999999999999998 78899999999999999996 8999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhCCChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCCCHHHHHHHHHH
Q 006120 251 YRAAVKALEEAIFIKPDYADAHCDLASALHAMGEDERAIEVFQKAIDLKPGHVDALYNLGGLYMDLGAGETEEAKKALKE 330 (660)
Q Consensus 251 ~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~La~~~~~~~~g~~~eA~~~~~~ 330 (660)
+++|+..+++++.++|+++.++.++|.++...|++++|+..|++++..+|++...+..+|.++... |++++|+..|++
T Consensus 300 ~~eA~~~l~~al~l~P~~~~a~~~La~~l~~~G~~~eA~~~l~~al~~~P~~~~~~~~~a~al~~~--G~~deA~~~l~~ 377 (656)
T PRK15174 300 NEKAIPLLQQSLATHPDLPYVRAMYARALRQVGQYTAASDEFVQLAREKGVTSKWNRYAAAALLQA--GKTSEAESVFEH 377 (656)
T ss_pred HHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCccchHHHHHHHHHHHHC--CCHHHHHHHHHH
Confidence 999999999999999999999999999999999999999999999999999988888889999988 999999999999
Q ss_pred HHcccCCh---hHHHHHHHHHHHHHH
Q 006120 331 ALKMTNRV---ELHDAVSHLKQLQKK 353 (660)
Q Consensus 331 al~l~p~~---~~~~~~~~l~~l~~~ 353 (660)
+++..|+. ...++...+......
T Consensus 378 al~~~P~~~~~~~~ea~~~~~~~~~~ 403 (656)
T PRK15174 378 YIQARASHLPQSFEEGLLALDGQISA 403 (656)
T ss_pred HHHhChhhchhhHHHHHHHHHHHHHh
Confidence 99998873 233455555555544
No 7
>KOG1126 consensus DNA-binding cell division cycle control protein [Cell cycle control, cell division, chromosome partitioning]
Probab=99.90 E-value=3.2e-22 Score=209.98 Aligned_cols=207 Identities=19% Similarity=0.218 Sum_probs=198.8
Q ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhccCCCchhchHHHH
Q 006120 124 AFDGHMAIGRVLYEHQLFKEALVSFKRACELQPTDVRPHFRAGNCLYVLGRYREAKEEYLLALEAAETGGNQWAYLLPQI 203 (660)
Q Consensus 124 ~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~ 203 (660)
.++.|..+|.+|.-+++++.|+++|++|++++|+.+.++..+|.-+....+++.|..+|++|+..+|. ...+
T Consensus 420 sPesWca~GNcfSLQkdh~~Aik~f~RAiQldp~faYayTLlGhE~~~~ee~d~a~~~fr~Al~~~~r--------hYnA 491 (638)
T KOG1126|consen 420 SPESWCALGNCFSLQKDHDTAIKCFKRAIQLDPRFAYAYTLLGHESIATEEFDKAMKSFRKALGVDPR--------HYNA 491 (638)
T ss_pred CcHHHHHhcchhhhhhHHHHHHHHHHHhhccCCccchhhhhcCChhhhhHHHHhHHHHHHhhhcCCch--------hhHH
Confidence 34889999999999999999999999999999999999999999999999999999999999999999 8899
Q ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhCC
Q 006120 204 YVNLGIALEGEGMVLSACEYYRESAILCPTHFRALKLLGSALFGVGEYRAAVKALEEAIFIKPDYADAHCDLASALHAMG 283 (660)
Q Consensus 204 ~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g 283 (660)
|+.+|.+|.++++++.|.-+|++|++++|.+......+|.++.+.|+.++|+.+|++|+.++|.++...+..|.++..++
T Consensus 492 wYGlG~vy~Kqek~e~Ae~~fqkA~~INP~nsvi~~~~g~~~~~~k~~d~AL~~~~~A~~ld~kn~l~~~~~~~il~~~~ 571 (638)
T KOG1126|consen 492 WYGLGTVYLKQEKLEFAEFHFQKAVEINPSNSVILCHIGRIQHQLKRKDKALQLYEKAIHLDPKNPLCKYHRASILFSLG 571 (638)
T ss_pred HHhhhhheeccchhhHHHHHHHhhhcCCccchhHHhhhhHHHHHhhhhhHHHHHHHHHHhcCCCCchhHHHHHHHHHhhc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHcccCChhH
Q 006120 284 EDERAIEVFQKAIDLKPGHVDALYNLGGLYMDLGAGETEEAKKALKEALKMTNRVEL 340 (660)
Q Consensus 284 ~~~~A~~~~~~al~~~p~~~~a~~~La~~~~~~~~g~~~eA~~~~~~al~l~p~~~~ 340 (660)
++++|+..+++..++.|+...+++.+|.+|..+ |+.+.|+..|--|.+++|....
T Consensus 572 ~~~eal~~LEeLk~~vP~es~v~~llgki~k~~--~~~~~Al~~f~~A~~ldpkg~~ 626 (638)
T KOG1126|consen 572 RYVEALQELEELKELVPQESSVFALLGKIYKRL--GNTDLALLHFSWALDLDPKGAQ 626 (638)
T ss_pred chHHHHHHHHHHHHhCcchHHHHHHHHHHHHHH--ccchHHHHhhHHHhcCCCccch
Confidence 999999999999999999999999999999999 9999999999999999998543
No 8
>PRK11447 cellulose synthase subunit BcsC; Provisional
Probab=99.89 E-value=1.3e-20 Score=227.17 Aligned_cols=301 Identities=14% Similarity=0.093 Sum_probs=237.7
Q ss_pred hhhcCCcchhhccCchHHHHhccCchhhHHHHHHHHHHHHhhccCCcCCchHH-----------h---------------
Q 006120 19 QKKQRTAAWAVSPNHGIVFDDTWKIVDDLEILVKRLKAKQAKDGKLKGDNSDA-----------F--------------- 72 (660)
Q Consensus 19 ~~~~~p~~~~~~~~lg~~y~~~~~~~~al~~~~~~~~~a~~~~~~l~~~~~~a-----------~--------------- 72 (660)
-.+.+|.+..++..+|.+|.+.+++.+|+..+.++++. .++.... +
T Consensus 295 aL~~~P~~~~a~~~Lg~~~~~~g~~~eA~~~l~~Al~~--------~p~~~~~~~~~~ll~~~~~~~~~~~g~~~~~~g~ 366 (1157)
T PRK11447 295 AVRANPKDSEALGALGQAYSQQGDRARAVAQFEKALAL--------DPHSSNRDKWESLLKVNRYWLLIQQGDAALKANN 366 (1157)
T ss_pred HHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--------CCCccchhHHHHHHHhhhHHHHHHHHHHHHHCCC
Confidence 34568999999999999999999999999999998873 2221110 0
Q ss_pred ---hhHHHHHHhCCchHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHhhccCcHHHH------------------------
Q 006120 73 ---SDAGWSRELGTSAEISEKRVFWEESTHDYAVFVKELGVLRNRADGARSREEAF------------------------ 125 (660)
Q Consensus 73 ---~~~~~~~~l~~~~~~~~~~~~l~~~~~~~g~~~~Al~~l~~a~~~~~~~~~~~------------------------ 125 (660)
+.......+...|.....+..++.++...|++++|+..++++++..+......
T Consensus 367 ~~eA~~~~~~Al~~~P~~~~a~~~Lg~~~~~~g~~~eA~~~y~~aL~~~p~~~~a~~~L~~l~~~~~~~~A~~~l~~l~~ 446 (1157)
T PRK11447 367 LAQAERLYQQARQVDNTDSYAVLGLGDVAMARKDYAAAERYYQQALRMDPGNTNAVRGLANLYRQQSPEKALAFIASLSA 446 (1157)
T ss_pred HHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCHHHHHHHHHhCCH
Confidence 00001112233444556777889999999999999999999998877654322
Q ss_pred ---------------HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhc
Q 006120 126 ---------------DGHMAIGRVLYEHQLFKEALVSFKRACELQPTDVRPHFRAGNCLYVLGRYREAKEEYLLALEAAE 190 (660)
Q Consensus 126 ---------------~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p 190 (660)
..+..+|..+...|++++|+..|+++++.+|+++.+++.+|.++...|++++|+..++++++..|
T Consensus 447 ~~~~~~~~~~~~l~~~~~~~~a~~~~~~g~~~eA~~~~~~Al~~~P~~~~~~~~LA~~~~~~G~~~~A~~~l~~al~~~P 526 (1157)
T PRK11447 447 SQRRSIDDIERSLQNDRLAQQAEALENQGKWAQAAELQRQRLALDPGSVWLTYRLAQDLRQAGQRSQADALMRRLAQQKP 526 (1157)
T ss_pred HHHHHHHHHHHHhhhhHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCC
Confidence 12234567778899999999999999999999999999999999999999999999999999988
Q ss_pred cCCCchhchHHHHHHHHHHHHHHCCCHHHHHHHHHHH----------------------------------------HHh
Q 006120 191 TGGNQWAYLLPQIYVNLGIALEGEGMVLSACEYYRES----------------------------------------AIL 230 (660)
Q Consensus 191 ~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a----------------------------------------l~~ 230 (660)
. .+..++.++..+...+++++|+..++++ ++.
T Consensus 527 ~--------~~~~~~a~al~l~~~~~~~~Al~~l~~l~~~~~~~~~~~l~~~l~~~~~l~~a~~l~~~G~~~eA~~~l~~ 598 (1157)
T PRK11447 527 N--------DPEQVYAYGLYLSGSDRDRAALAHLNTLPRAQWNSNIQELAQRLQSDQVLETANRLRDSGKEAEAEALLRQ 598 (1157)
T ss_pred C--------CHHHHHHHHHHHHhCCCHHHHHHHHHhCCchhcChhHHHHHHHHhhhHHHHHHHHHHHCCCHHHHHHHHHh
Confidence 7 3444444454444455555554444321 224
Q ss_pred CCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhCCChHHHHHHHHHHHHhCCCCHHHHHHHH
Q 006120 231 CPTHFRALKLLGSALFGVGEYRAAVKALEEAIFIKPDYADAHCDLASALHAMGEDERAIEVFQKAIDLKPGHVDALYNLG 310 (660)
Q Consensus 231 ~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~La 310 (660)
.|.++..+..+|.++...|++++|+..|+++++.+|+++.++..++.+|...|++++|+..++++++..|+++.++..+|
T Consensus 599 ~p~~~~~~~~La~~~~~~g~~~~A~~~y~~al~~~P~~~~a~~~la~~~~~~g~~~eA~~~l~~ll~~~p~~~~~~~~la 678 (1157)
T PRK11447 599 QPPSTRIDLTLADWAQQRGDYAAARAAYQRVLTREPGNADARLGLIEVDIAQGDLAAARAQLAKLPATANDSLNTQRRVA 678 (1157)
T ss_pred CCCCchHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHhccCCCChHHHHHHH
Confidence 67888888899999999999999999999999999999999999999999999999999999999988899888899999
Q ss_pred HHHHHhcCCCHHHHHHHHHHHHcccCC
Q 006120 311 GLYMDLGAGETEEAKKALKEALKMTNR 337 (660)
Q Consensus 311 ~~~~~~~~g~~~eA~~~~~~al~l~p~ 337 (660)
.++... |++++|...|++++...|+
T Consensus 679 ~~~~~~--g~~~eA~~~~~~al~~~~~ 703 (1157)
T PRK11447 679 LAWAAL--GDTAAAQRTFNRLIPQAKS 703 (1157)
T ss_pred HHHHhC--CCHHHHHHHHHHHhhhCcc
Confidence 999888 8999999999999887654
No 9
>PRK11788 tetratricopeptide repeat protein; Provisional
Probab=99.89 E-value=1.4e-20 Score=202.10 Aligned_cols=283 Identities=16% Similarity=0.176 Sum_probs=245.1
Q ss_pred CcchhhccCchHHHHhccCchhhHHHHHHHHHHHHhhccCCcCCchHHhhhHHHHHHhCCchHHHHhHHHHHHHHHHHHH
Q 006120 24 TAAWAVSPNHGIVFDDTWKIVDDLEILVKRLKAKQAKDGKLKGDNSDAFSDAGWSRELGTSAEISEKRVFWEESTHDYAV 103 (660)
Q Consensus 24 p~~~~~~~~lg~~y~~~~~~~~al~~~~~~~~~a~~~~~~l~~~~~~a~~~~~~~~~l~~~~~~~~~~~~l~~~~~~~g~ 103 (660)
.......+..|..+...+++.+++..+.+.++. .+.+ ...+..++.++...|+
T Consensus 32 ~~~~~~~y~~g~~~~~~~~~~~A~~~~~~al~~--------~p~~-------------------~~~~~~la~~~~~~g~ 84 (389)
T PRK11788 32 SNRLSRDYFKGLNFLLNEQPDKAIDLFIEMLKV--------DPET-------------------VELHLALGNLFRRRGE 84 (389)
T ss_pred hhhccHHHHHHHHHHhcCChHHHHHHHHHHHhc--------Cccc-------------------HHHHHHHHHHHHHcCc
Confidence 344455666799999999999999999999882 3332 3345566888899999
Q ss_pred HHHHHHHHHHHHhhccCc-HHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHH
Q 006120 104 FVKELGVLRNRADGARSR-EEAFDGHMAIGRVLYEHQLFKEALVSFKRACELQPTDVRPHFRAGNCLYVLGRYREAKEEY 182 (660)
Q Consensus 104 ~~~Al~~l~~a~~~~~~~-~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~ 182 (660)
+.+|+..+++++...... ......+..+|.++...|++++|+..|+++++..|....++..++.++...|++++|++.+
T Consensus 85 ~~~A~~~~~~~l~~~~~~~~~~~~~~~~La~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~la~~~~~~g~~~~A~~~~ 164 (389)
T PRK11788 85 VDRAIRIHQNLLSRPDLTREQRLLALQELGQDYLKAGLLDRAEELFLQLVDEGDFAEGALQQLLEIYQQEKDWQKAIDVA 164 (389)
T ss_pred HHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHcCCcchHHHHHHHHHHHHHhchHHHHHHHH
Confidence 999999999888754322 2334678999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHhccCCCchhchHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHH
Q 006120 183 LLALEAAETGGNQWAYLLPQIYVNLGIALEGEGMVLSACEYYRESAILCPTHFRALKLLGSALFGVGEYRAAVKALEEAI 262 (660)
Q Consensus 183 ~~al~~~p~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al 262 (660)
+++++..|...... ....+..+|.++...|++++|+.+++++++..|+...++..+|.++...|++++|+..+++++
T Consensus 165 ~~~~~~~~~~~~~~---~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~ 241 (389)
T PRK11788 165 ERLEKLGGDSLRVE---IAHFYCELAQQALARGDLDAARALLKKALAADPQCVRASILLGDLALAQGDYAAAIEALERVE 241 (389)
T ss_pred HHHHHhcCCcchHH---HHHHHHHHHHHHHhCCCHHHHHHHHHHHHhHCcCCHHHHHHHHHHHHHCCCHHHHHHHHHHHH
Confidence 99999877643211 345678899999999999999999999999999999999999999999999999999999999
Q ss_pred HhCCCC-HHHHHHHHHHHHhCCChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHcccCChh
Q 006120 263 FIKPDY-ADAHCDLASALHAMGEDERAIEVFQKAIDLKPGHVDALYNLGGLYMDLGAGETEEAKKALKEALKMTNRVE 339 (660)
Q Consensus 263 ~~~p~~-~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~La~~~~~~~~g~~~eA~~~~~~al~l~p~~~ 339 (660)
..+|.+ ..++..++.+|...|++++|+..++++++..|+... +..++.++... |++++|...++++++..|+..
T Consensus 242 ~~~p~~~~~~~~~l~~~~~~~g~~~~A~~~l~~~~~~~p~~~~-~~~la~~~~~~--g~~~~A~~~l~~~l~~~P~~~ 316 (389)
T PRK11788 242 EQDPEYLSEVLPKLMECYQALGDEAEGLEFLRRALEEYPGADL-LLALAQLLEEQ--EGPEAAQALLREQLRRHPSLR 316 (389)
T ss_pred HHChhhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCchH-HHHHHHHHHHh--CCHHHHHHHHHHHHHhCcCHH
Confidence 998876 467889999999999999999999999999998754 48899999998 999999999999999988754
No 10
>TIGR02917 PEP_TPR_lipo putative PEP-CTERM system TPR-repeat lipoprotein. This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator.
Probab=99.89 E-value=3.4e-20 Score=219.88 Aligned_cols=296 Identities=20% Similarity=0.183 Sum_probs=252.6
Q ss_pred hcCCcchhhccCchHHHHhccCchhhHHHHHHHHHHHHhhccCCcCCchHHhhhHHHHHHh---------------CCch
Q 006120 21 KQRTAAWAVSPNHGIVFDDTWKIVDDLEILVKRLKAKQAKDGKLKGDNSDAFSDAGWSREL---------------GTSA 85 (660)
Q Consensus 21 ~~~p~~~~~~~~lg~~y~~~~~~~~al~~~~~~~~~a~~~~~~l~~~~~~a~~~~~~~~~l---------------~~~~ 85 (660)
..+|.....+..+|.++.+.|++.++++.+.+..+ ..++....+...+..... ...+
T Consensus 357 ~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~--------~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~ 428 (899)
T TIGR02917 357 GLDPDDPAALSLLGEAYLALGDFEKAAEYLAKATE--------LDPENAAARTQLGISKLSQGDPSEAIADLETAAQLDP 428 (899)
T ss_pred hcCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHh--------cCCCCHHHHHHHHHHHHhCCChHHHHHHHHHHHhhCC
Confidence 45666777788888888888888888888887776 344444433333322211 1122
Q ss_pred HHHHhHHHHHHHHHHHHHHHHHHHHHHHHHhhccCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHH
Q 006120 86 EISEKRVFWEESTHDYAVFVKELGVLRNRADGARSREEAFDGHMAIGRVLYEHQLFKEALVSFKRACELQPTDVRPHFRA 165 (660)
Q Consensus 86 ~~~~~~~~l~~~~~~~g~~~~Al~~l~~a~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l 165 (660)
........++..+...|++++|+..+.+.....+..+ ..+..+|.++...|++++|+.+|+++++.+|++..++..+
T Consensus 429 ~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~---~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l 505 (899)
T TIGR02917 429 ELGRADLLLILSYLRSGQFDKALAAAKKLEKKQPDNA---SLHNLLGAIYLGKGDLAKAREAFEKALSIEPDFFPAAANL 505 (899)
T ss_pred cchhhHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCc---HHHHHHHHHHHhCCCHHHHHHHHHHHHhhCCCcHHHHHHH
Confidence 2233444556677788888999998888887666554 6788999999999999999999999999999999999999
Q ss_pred HHHHHHcCCHHHHHHHHHHHHHHhccCCCchhchHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHH
Q 006120 166 GNCLYVLGRYREAKEEYLLALEAAETGGNQWAYLLPQIYVNLGIALEGEGMVLSACEYYRESAILCPTHFRALKLLGSAL 245 (660)
Q Consensus 166 a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~ 245 (660)
|.++...|++++|...+++++...|. ...++..++.++...|++++|+..+++++..+|.+...+..++.++
T Consensus 506 a~~~~~~g~~~~A~~~~~~~~~~~~~--------~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~ 577 (899)
T TIGR02917 506 ARIDIQEGNPDDAIQRFEKVLTIDPK--------NLRAILALAGLYLRTGNEEEAVAWLEKAAELNPQEIEPALALAQYY 577 (899)
T ss_pred HHHHHHCCCHHHHHHHHHHHHHhCcC--------cHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCccchhHHHHHHHHH
Confidence 99999999999999999999999988 6788899999999999999999999999999999999999999999
Q ss_pred HHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhCCChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCCCHHHHH
Q 006120 246 FGVGEYRAAVKALEEAIFIKPDYADAHCDLASALHAMGEDERAIEVFQKAIDLKPGHVDALYNLGGLYMDLGAGETEEAK 325 (660)
Q Consensus 246 ~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~La~~~~~~~~g~~~eA~ 325 (660)
...|++++|+..+++++...|.++.+|..+|.++...|++++|+..|+++++..|.++.++..++.++... |++++|.
T Consensus 578 ~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~--~~~~~A~ 655 (899)
T TIGR02917 578 LGKGQLKKALAILNEAADAAPDSPEAWLMLGRAQLAAGDLNKAVSSFKKLLALQPDSALALLLLADAYAVM--KNYAKAI 655 (899)
T ss_pred HHCCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHc--CCHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999998 9999999
Q ss_pred HHHHHHHcccCC
Q 006120 326 KALKEALKMTNR 337 (660)
Q Consensus 326 ~~~~~al~l~p~ 337 (660)
..|+++++..|+
T Consensus 656 ~~~~~~~~~~~~ 667 (899)
T TIGR02917 656 TSLKRALELKPD 667 (899)
T ss_pred HHHHHHHhcCCC
Confidence 999999999887
No 11
>TIGR02917 PEP_TPR_lipo putative PEP-CTERM system TPR-repeat lipoprotein. This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator.
Probab=99.88 E-value=2.2e-20 Score=221.44 Aligned_cols=234 Identities=20% Similarity=0.230 Sum_probs=167.5
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHhhccCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHH
Q 006120 90 KRVFWEESTHDYAVFVKELGVLRNRADGARSREEAFDGHMAIGRVLYEHQLFKEALVSFKRACELQPTDVRPHFRAGNCL 169 (660)
Q Consensus 90 ~~~~l~~~~~~~g~~~~Al~~l~~a~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~ 169 (660)
.+..++..+...|++.+|+..+++.++..+..+ ..+..+|.++...|++++|+..|+++++..|.++.++..+|.++
T Consensus 569 ~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~---~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~ 645 (899)
T TIGR02917 569 PALALAQYYLGKGQLKKALAILNEAADAAPDSP---EAWLMLGRAQLAAGDLNKAVSSFKKLLALQPDSALALLLLADAY 645 (899)
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCH---HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHH
Confidence 334445555556666666666666655444433 55666666676777777777777777666666666666677777
Q ss_pred HHcCCHHHHHHHHHHHHHHhccCCCchhchHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHCC
Q 006120 170 YVLGRYREAKEEYLLALEAAETGGNQWAYLLPQIYVNLGIALEGEGMVLSACEYYRESAILCPTHFRALKLLGSALFGVG 249 (660)
Q Consensus 170 ~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g 249 (660)
...|++++|+..++++++..|+ ...++..++.++...|++++|+..++.+....|.+...+..+|.++...|
T Consensus 646 ~~~~~~~~A~~~~~~~~~~~~~--------~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~g 717 (899)
T TIGR02917 646 AVMKNYAKAITSLKRALELKPD--------NTEAQIGLAQLLLAAKRTESAKKIAKSLQKQHPKAALGFELEGDLYLRQK 717 (899)
T ss_pred HHcCCHHHHHHHHHHHHhcCCC--------CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCcCChHHHHHHHHHHHHCC
Confidence 7777777777777777666665 45666666666666667777766666666666667777777777777788
Q ss_pred CHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhCCChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCCCHHHHHHHHH
Q 006120 250 EYRAAVKALEEAIFIKPDYADAHCDLASALHAMGEDERAIEVFQKAIDLKPGHVDALYNLGGLYMDLGAGETEEAKKALK 329 (660)
Q Consensus 250 ~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~La~~~~~~~~g~~~eA~~~~~ 329 (660)
++++|+..|++++...|++ ..+..++.++...|++++|+..++++++..|++..++..+|.++... |++++|...|+
T Consensus 718 ~~~~A~~~~~~~~~~~~~~-~~~~~l~~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~la~~~~~~--g~~~~A~~~~~ 794 (899)
T TIGR02917 718 DYPAAIQAYRKALKRAPSS-QNAIKLHRALLASGNTAEAVKTLEAWLKTHPNDAVLRTALAELYLAQ--KDYDKAIKHYR 794 (899)
T ss_pred CHHHHHHHHHHHHhhCCCc-hHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHC--cCHHHHHHHHH
Confidence 8888888888888777766 66677788888888888888888888888888888888888888877 88888888888
Q ss_pred HHHcccCC
Q 006120 330 EALKMTNR 337 (660)
Q Consensus 330 ~al~l~p~ 337 (660)
++++..|+
T Consensus 795 ~~~~~~p~ 802 (899)
T TIGR02917 795 TVVKKAPD 802 (899)
T ss_pred HHHHhCCC
Confidence 88888776
No 12
>KOG1126 consensus DNA-binding cell division cycle control protein [Cell cycle control, cell division, chromosome partitioning]
Probab=99.88 E-value=8.5e-22 Score=206.83 Aligned_cols=227 Identities=18% Similarity=0.251 Sum_probs=204.3
Q ss_pred HHHHHHHHHHHHHHHHhhccCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh-------------------------
Q 006120 100 DYAVFVKELGVLRNRADGARSREEAFDGHMAIGRVLYEHQLFKEALVSFKRACEL------------------------- 154 (660)
Q Consensus 100 ~~g~~~~Al~~l~~a~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~------------------------- 154 (660)
..-+..+|+..|.+......+.. .++..+|..|+++++|++|..+|+.+-+.
T Consensus 331 s~y~~~~A~~~~~klp~h~~nt~---wvl~q~GrayFEl~~Y~~a~~~F~~~r~~~p~rv~~meiyST~LWHLq~~v~Ls 407 (638)
T KOG1126|consen 331 SQYNCREALNLFEKLPSHHYNTG---WVLSQLGRAYFELIEYDQAERIFSLVRRIEPYRVKGMEIYSTTLWHLQDEVALS 407 (638)
T ss_pred HHHHHHHHHHHHHhhHHhcCCch---HHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccccchhHHHHHHHHHHhhHHHH
Confidence 44456677777777433333333 67788899999999999998888877654
Q ss_pred ---------CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhccCCCchhchHHHHHHHHHHHHHHCCCHHHHHHHHH
Q 006120 155 ---------QPTDVRPHFRAGNCLYVLGRYREAKEEYLLALEAAETGGNQWAYLLPQIYVNLGIALEGEGMVLSACEYYR 225 (660)
Q Consensus 155 ---------~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~ 225 (660)
+|+.++.|..+|+||..+++++.|+++|++|++++|. .+.+|..+|.-+....++++|..+|+
T Consensus 408 ~Laq~Li~~~~~sPesWca~GNcfSLQkdh~~Aik~f~RAiQldp~--------faYayTLlGhE~~~~ee~d~a~~~fr 479 (638)
T KOG1126|consen 408 YLAQDLIDTDPNSPESWCALGNCFSLQKDHDTAIKCFKRAIQLDPR--------FAYAYTLLGHESIATEEFDKAMKSFR 479 (638)
T ss_pred HHHHHHHhhCCCCcHHHHHhcchhhhhhHHHHHHHHHHHhhccCCc--------cchhhhhcCChhhhhHHHHhHHHHHH
Confidence 4667899999999999999999999999999999998 88999999999999999999999999
Q ss_pred HHHHhCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhCCChHHHHHHHHHHHHhCCCCHHH
Q 006120 226 ESAILCPTHFRALKLLGSALFGVGEYRAAVKALEEAIFIKPDYADAHCDLASALHAMGEDERAIEVFQKAIDLKPGHVDA 305 (660)
Q Consensus 226 ~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~a 305 (660)
+|+..+|.+..+|+.+|.+|.++++++.|+-.|++|++++|.+..+...+|.++.+.|+.++|+..+++|+.++|.++-.
T Consensus 480 ~Al~~~~rhYnAwYGlG~vy~Kqek~e~Ae~~fqkA~~INP~nsvi~~~~g~~~~~~k~~d~AL~~~~~A~~ld~kn~l~ 559 (638)
T KOG1126|consen 480 KALGVDPRHYNAWYGLGTVYLKQEKLEFAEFHFQKAVEINPSNSVILCHIGRIQHQLKRKDKALQLYEKAIHLDPKNPLC 559 (638)
T ss_pred hhhcCCchhhHHHHhhhhheeccchhhHHHHHHHhhhcCCccchhHHhhhhHHHHHhhhhhHHHHHHHHHHhcCCCCchh
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHhcCCCHHHHHHHHHHHHcccCChh
Q 006120 306 LYNLGGLYMDLGAGETEEAKKALKEALKMTNRVE 339 (660)
Q Consensus 306 ~~~La~~~~~~~~g~~~eA~~~~~~al~l~p~~~ 339 (660)
.+..|.++..+ +++++|+..+++..++.|+..
T Consensus 560 ~~~~~~il~~~--~~~~eal~~LEeLk~~vP~es 591 (638)
T KOG1126|consen 560 KYHRASILFSL--GRYVEALQELEELKELVPQES 591 (638)
T ss_pred HHHHHHHHHhh--cchHHHHHHHHHHHHhCcchH
Confidence 99999999998 999999999999999998744
No 13
>PRK11447 cellulose synthase subunit BcsC; Provisional
Probab=99.88 E-value=3.6e-20 Score=223.49 Aligned_cols=277 Identities=16% Similarity=0.114 Sum_probs=222.4
Q ss_pred CchHHHHhccCchhhHHHHHHHHHHHHhhccCCcCCchHHhhhHHHHHHhCCchHHHHhHHHHHHHHHHHHHHHHHHHHH
Q 006120 32 NHGIVFDDTWKIVDDLEILVKRLKAKQAKDGKLKGDNSDAFSDAGWSRELGTSAEISEKRVFWEESTHDYAVFVKELGVL 111 (660)
Q Consensus 32 ~lg~~y~~~~~~~~al~~~~~~~~~a~~~~~~l~~~~~~a~~~~~~~~~l~~~~~~~~~~~~l~~~~~~~g~~~~Al~~l 111 (660)
.+|..+...+++.+|+..+.++++. .|+. ...+..++.++...|++++|+..+
T Consensus 274 ~~G~~~~~~g~~~~A~~~l~~aL~~--------~P~~-------------------~~a~~~Lg~~~~~~g~~~eA~~~l 326 (1157)
T PRK11447 274 AQGLAAVDSGQGGKAIPELQQAVRA--------NPKD-------------------SEALGALGQAYSQQGDRARAVAQF 326 (1157)
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHHh--------CCCC-------------------HHHHHHHHHHHHHcCCHHHHHHHH
Confidence 4588888888888888888888882 3333 334556688889999999999999
Q ss_pred HHHHhhccCcHHH-----------HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHH
Q 006120 112 RNRADGARSREEA-----------FDGHMAIGRVLYEHQLFKEALVSFKRACELQPTDVRPHFRAGNCLYVLGRYREAKE 180 (660)
Q Consensus 112 ~~a~~~~~~~~~~-----------~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~ 180 (660)
+++++..++.... +.....+|.++...|++++|+..|+++++.+|+++.++..+|.++...|++++|++
T Consensus 327 ~~Al~~~p~~~~~~~~~~ll~~~~~~~~~~~g~~~~~~g~~~eA~~~~~~Al~~~P~~~~a~~~Lg~~~~~~g~~~eA~~ 406 (1157)
T PRK11447 327 EKALALDPHSSNRDKWESLLKVNRYWLLIQQGDAALKANNLAQAERLYQQARQVDNTDSYAVLGLGDVAMARKDYAAAER 406 (1157)
T ss_pred HHHHHhCCCccchhHHHHHHHhhhHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHH
Confidence 9999887765421 12334568889999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHhccCCCchhch----------------------------------HHHHHHHHHHHHHHCCCHHHHHHHHHH
Q 006120 181 EYLLALEAAETGGNQWAYL----------------------------------LPQIYVNLGIALEGEGMVLSACEYYRE 226 (660)
Q Consensus 181 ~~~~al~~~p~~~~~~~~~----------------------------------~~~~~~~la~~~~~~g~~~~A~~~~~~ 226 (660)
.|+++++++|.....+..+ ....+..+|.++...|++++|+..|++
T Consensus 407 ~y~~aL~~~p~~~~a~~~L~~l~~~~~~~~A~~~l~~l~~~~~~~~~~~~~~l~~~~~~~~a~~~~~~g~~~eA~~~~~~ 486 (1157)
T PRK11447 407 YYQQALRMDPGNTNAVRGLANLYRQQSPEKALAFIASLSASQRRSIDDIERSLQNDRLAQQAEALENQGKWAQAAELQRQ 486 (1157)
T ss_pred HHHHHHHhCCCCHHHHHHHHHHHHhcCHHHHHHHHHhCCHHHHHHHHHHHHHhhhhHHHHHHHHHHHCCCHHHHHHHHHH
Confidence 9999999988754322100 012334567778889999999999999
Q ss_pred HHHhCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhCCChHHHHHHHHHH-----------
Q 006120 227 SAILCPTHFRALKLLGSALFGVGEYRAAVKALEEAIFIKPDYADAHCDLASALHAMGEDERAIEVFQKA----------- 295 (660)
Q Consensus 227 al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~a----------- 295 (660)
+++.+|+++.+++.+|.++...|++++|+..++++++..|+++..++.++..+...+++++|+..++++
T Consensus 487 Al~~~P~~~~~~~~LA~~~~~~G~~~~A~~~l~~al~~~P~~~~~~~a~al~l~~~~~~~~Al~~l~~l~~~~~~~~~~~ 566 (1157)
T PRK11447 487 RLALDPGSVWLTYRLAQDLRQAGQRSQADALMRRLAQQKPNDPEQVYAYGLYLSGSDRDRAALAHLNTLPRAQWNSNIQE 566 (1157)
T ss_pred HHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHhCCCHHHHHHHHHhCCchhcChhHHH
Confidence 999999999999999999999999999999999999999999888777777666667766666655432
Q ss_pred -----------------------------HHhCCCCHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHcccCC
Q 006120 296 -----------------------------IDLKPGHVDALYNLGGLYMDLGAGETEEAKKALKEALKMTNR 337 (660)
Q Consensus 296 -----------------------------l~~~p~~~~a~~~La~~~~~~~~g~~~eA~~~~~~al~l~p~ 337 (660)
++..|.++..+..+|.++... |++++|+..|+++++++|+
T Consensus 567 l~~~l~~~~~l~~a~~l~~~G~~~eA~~~l~~~p~~~~~~~~La~~~~~~--g~~~~A~~~y~~al~~~P~ 635 (1157)
T PRK11447 567 LAQRLQSDQVLETANRLRDSGKEAEAEALLRQQPPSTRIDLTLADWAQQR--GDYAAARAAYQRVLTREPG 635 (1157)
T ss_pred HHHHHhhhHHHHHHHHHHHCCCHHHHHHHHHhCCCCchHHHHHHHHHHHc--CCHHHHHHHHHHHHHhCCC
Confidence 223577777778888888877 8888888888888888776
No 14
>PRK09782 bacteriophage N4 receptor, outer membrane subunit; Provisional
Probab=99.87 E-value=4.7e-20 Score=213.48 Aligned_cols=273 Identities=13% Similarity=-0.010 Sum_probs=227.0
Q ss_pred CCc--chhhccCchHHHHhccCchhhHHHHHHHHHHHHhhccCCcCCchHHhhhHHHHHHhCCchHHHHhHHHHHHHHHH
Q 006120 23 RTA--AWAVSPNHGIVFDDTWKIVDDLEILVKRLKAKQAKDGKLKGDNSDAFSDAGWSRELGTSAEISEKRVFWEESTHD 100 (660)
Q Consensus 23 ~p~--~~~~~~~lg~~y~~~~~~~~al~~~~~~~~~a~~~~~~l~~~~~~a~~~~~~~~~l~~~~~~~~~~~~l~~~~~~ 100 (660)
+|. ...+|.++|.++.. +...+++..+.+++.. .|+.. ....++.++..
T Consensus 471 ~p~~~~~~a~~~LG~~l~~-~~~~eAi~a~~~Al~~--------~Pd~~--------------------~~L~lA~al~~ 521 (987)
T PRK09782 471 MSPSYDAAAWNRLAKCYRD-TLPGVALYAWLQAEQR--------QPDAW--------------------QHRAVAYQAYQ 521 (987)
T ss_pred CCCCCCHHHHHHHHHHHHh-CCcHHHHHHHHHHHHh--------CCchH--------------------HHHHHHHHHHH
Confidence 455 78888899998887 6777888888777773 22210 13334556678
Q ss_pred HHHHHHHHHHHHHHHhhccCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHH
Q 006120 101 YAVFVKELGVLRNRADGARSREEAFDGHMAIGRVLYEHQLFKEALVSFKRACELQPTDVRPHFRAGNCLYVLGRYREAKE 180 (660)
Q Consensus 101 ~g~~~~Al~~l~~a~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~ 180 (660)
.|++++|+..++++....+.. ..++.+|.++...|++++|+.+|+++++..|........++......|++++|+.
T Consensus 522 ~Gr~eeAi~~~rka~~~~p~~----~a~~~la~all~~Gd~~eA~~~l~qAL~l~P~~~~l~~~La~~l~~~Gr~~eAl~ 597 (987)
T PRK09782 522 VEDYATALAAWQKISLHDMSN----EDLLAAANTAQAAGNGAARDRWLQQAEQRGLGDNALYWWLHAQRYIPGQPELALN 597 (987)
T ss_pred CCCHHHHHHHHHHHhccCCCc----HHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCccHHHHHHHHHHHHhCCCHHHHHH
Confidence 888999999998876654443 3467888889999999999999999999888887777777777777899999999
Q ss_pred HHHHHHHHhccCCCchhchHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHCCCHHHHHHHHHH
Q 006120 181 EYLLALEAAETGGNQWAYLLPQIYVNLGIALEGEGMVLSACEYYRESAILCPTHFRALKLLGSALFGVGEYRAAVKALEE 260 (660)
Q Consensus 181 ~~~~al~~~p~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~ 260 (660)
.++++++++|+ +.++.++|.++.+.|++++|+..+++++.++|+++.++.++|.++...|++++|+..|++
T Consensus 598 ~~~~AL~l~P~---------~~a~~~LA~~l~~lG~~deA~~~l~~AL~l~Pd~~~a~~nLG~aL~~~G~~eeAi~~l~~ 668 (987)
T PRK09782 598 DLTRSLNIAPS---------ANAYVARATIYRQRHNVPAAVSDLRAALELEPNNSNYQAALGYALWDSGDIAQSREMLER 668 (987)
T ss_pred HHHHHHHhCCC---------HHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHH
Confidence 99999998884 357788999999999999999999999999999999999999999999999999999999
Q ss_pred HHHhCCCCHHHHHHHHHHHHhCCChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHcccCChh
Q 006120 261 AIFIKPDYADAHCDLASALHAMGEDERAIEVFQKAIDLKPGHVDALYNLGGLYMDLGAGETEEAKKALKEALKMTNRVE 339 (660)
Q Consensus 261 al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~La~~~~~~~~g~~~eA~~~~~~al~l~p~~~ 339 (660)
+++++|+++.++.++|.++..+|++++|+.+|+++++++|+++.+....|.+.... .+++.|.+.++++..++|..-
T Consensus 669 AL~l~P~~~~a~~nLA~al~~lGd~~eA~~~l~~Al~l~P~~a~i~~~~g~~~~~~--~~~~~a~~~~~r~~~~~~~~~ 745 (987)
T PRK09782 669 AHKGLPDDPALIRQLAYVNQRLDDMAATQHYARLVIDDIDNQALITPLTPEQNQQR--FNFRRLHEEVGRRWTFSFDSS 745 (987)
T ss_pred HHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCCchhhhhhhHHHHHH--HHHHHHHHHHHHHhhcCccch
Confidence 99999999999999999999999999999999999999999989999999988887 889999999999998887644
No 15
>KOG1155 consensus Anaphase-promoting complex (APC), Cdc23 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=99.87 E-value=1.9e-19 Score=180.96 Aligned_cols=317 Identities=17% Similarity=0.112 Sum_probs=258.7
Q ss_pred hhHhhhcCCcchhhccCchHHHHhccCchhhHHHHHHHHHHHHhhccCCcCCchHHhhhHHHHHHh----------CCch
Q 006120 16 IESQKKQRTAAWAVSPNHGIVFDDTWKIVDDLEILVKRLKAKQAKDGKLKGDNSDAFSDAGWSREL----------GTSA 85 (660)
Q Consensus 16 ~~~~~~~~p~~~~~~~~lg~~y~~~~~~~~al~~~~~~~~~a~~~~~~l~~~~~~a~~~~~~~~~l----------~~~~ 85 (660)
.++...+...+.-.+|..|.++-+.+....|+..+...+.. .|-+..++..+..+..- .++.
T Consensus 153 le~~~~~~~~D~fllYL~Gvv~k~~~~~s~A~~sfv~~v~~--------~P~~W~AWleL~~lit~~e~~~~l~~~l~~~ 224 (559)
T KOG1155|consen 153 LESKHCGGEKDEFLLYLYGVVLKELGLLSLAIDSFVEVVNR--------YPWFWSAWLELSELITDIEILSILVVGLPSD 224 (559)
T ss_pred HHHHHhcccchhHHHHHHHHHHHhhchHHHHHHHHHHHHhc--------CCcchHHHHHHHHhhchHHHHHHHHhcCccc
Confidence 44455555666777889999999999999999988888772 55555555444433110 1222
Q ss_pred HHHHhHHHHHHHHHHHHHHHHHHHHHHHHHhh-ccCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCH-----
Q 006120 86 EISEKRVFWEESTHDYAVFVKELGVLRNRADG-ARSREEAFDGHMAIGRVLYEHQLFKEALVSFKRACELQPTDV----- 159 (660)
Q Consensus 86 ~~~~~~~~l~~~~~~~g~~~~Al~~l~~a~~~-~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~----- 159 (660)
........+..++....+.+++++........ .+..+ ..-...|.+.+.+.++++|+..|+...+.+|-..
T Consensus 225 ~h~M~~~F~~~a~~el~q~~e~~~k~e~l~~~gf~~~~---~i~~~~A~~~y~~rDfD~a~s~Feei~knDPYRl~dmdl 301 (559)
T KOG1155|consen 225 MHWMKKFFLKKAYQELHQHEEALQKKERLSSVGFPNSM---YIKTQIAAASYNQRDFDQAESVFEEIRKNDPYRLDDMDL 301 (559)
T ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCccH---HHHHHHHHHHhhhhhHHHHHHHHHHHHhcCCCcchhHHH
Confidence 33444555677888888888888888877765 45443 4556788899999999999999999999887521
Q ss_pred -----------------------------HHHHHHHHHHHHcCCHHHHHHHHHHHHHHhccCCCchhchHHHHHHHHHHH
Q 006120 160 -----------------------------RPHFRAGNCLYVLGRYREAKEEYLLALEAAETGGNQWAYLLPQIYVNLGIA 210 (660)
Q Consensus 160 -----------------------------~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~la~~ 210 (660)
+....+|+.|...++.++|+.+|++|++++|. ...+|..+|.-
T Consensus 302 ySN~LYv~~~~skLs~LA~~v~~idKyR~ETCCiIaNYYSlr~eHEKAv~YFkRALkLNp~--------~~~aWTLmGHE 373 (559)
T KOG1155|consen 302 YSNVLYVKNDKSKLSYLAQNVSNIDKYRPETCCIIANYYSLRSEHEKAVMYFKRALKLNPK--------YLSAWTLMGHE 373 (559)
T ss_pred HhHHHHHHhhhHHHHHHHHHHHHhccCCccceeeehhHHHHHHhHHHHHHHHHHHHhcCcc--------hhHHHHHhhHH
Confidence 11223466777888999999999999999999 88999999999
Q ss_pred HHHCCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhCCChHHHHH
Q 006120 211 LEGEGMVLSACEYYRESAILCPTHFRALKLLGSALFGVGEYRAAVKALEEAIFIKPDYADAHCDLASALHAMGEDERAIE 290 (660)
Q Consensus 211 ~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~ 290 (660)
|..+.+...|++.|++|++++|.+..+|+.||.+|.-++-+.-|+-+|++|+...|++...|..||.||.++++.++|+.
T Consensus 374 yvEmKNt~AAi~sYRrAvdi~p~DyRAWYGLGQaYeim~Mh~YaLyYfqkA~~~kPnDsRlw~aLG~CY~kl~~~~eAiK 453 (559)
T KOG1155|consen 374 YVEMKNTHAAIESYRRAVDINPRDYRAWYGLGQAYEIMKMHFYALYYFQKALELKPNDSRLWVALGECYEKLNRLEEAIK 453 (559)
T ss_pred HHHhcccHHHHHHHHHHHhcCchhHHHHhhhhHHHHHhcchHHHHHHHHHHHhcCCCchHHHHHHHHHHHHhccHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHhCCCCHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHccc-----CChhHHHHHHHHHHHHHH
Q 006120 291 VFQKAIDLKPGHVDALYNLGGLYMDLGAGETEEAKKALKEALKMT-----NRVELHDAVSHLKQLQKK 353 (660)
Q Consensus 291 ~~~~al~~~p~~~~a~~~La~~~~~~~~g~~~eA~~~~~~al~l~-----p~~~~~~~~~~l~~l~~~ 353 (660)
+|.+++.....+..++..||.+|.++ ++.++|..+|++.++.. -.++...+...|..-..+
T Consensus 454 Cykrai~~~dte~~~l~~LakLye~l--~d~~eAa~~yek~v~~~~~eg~~~~~t~ka~~fLA~~f~k 519 (559)
T KOG1155|consen 454 CYKRAILLGDTEGSALVRLAKLYEEL--KDLNEAAQYYEKYVEVSELEGEIDDETIKARLFLAEYFKK 519 (559)
T ss_pred HHHHHHhccccchHHHHHHHHHHHHH--HhHHHHHHHHHHHHHHHHhhcccchHHHHHHHHHHHHHHh
Confidence 99999999998999999999999999 99999999999999854 334455566666555444
No 16
>PRK09782 bacteriophage N4 receptor, outer membrane subunit; Provisional
Probab=99.87 E-value=2.6e-19 Score=207.33 Aligned_cols=308 Identities=14% Similarity=0.085 Sum_probs=249.0
Q ss_pred hcCCcchhhccCchHHHHhccCchhhHHHHHHHHHHHHhhccCCcCCch----HH---------------h-------hh
Q 006120 21 KQRTAAWAVSPNHGIVFDDTWKIVDDLEILVKRLKAKQAKDGKLKGDNS----DA---------------F-------SD 74 (660)
Q Consensus 21 ~~~p~~~~~~~~lg~~y~~~~~~~~al~~~~~~~~~a~~~~~~l~~~~~----~a---------------~-------~~ 74 (660)
++.|....+.-.++....+.|+..++-..+.+++.. ..++.+....- .. + ..
T Consensus 370 ~~~~~~~~~l~q~~~~~~~~~~~~~a~~~~~~~~~~--~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 447 (987)
T PRK09782 370 QQEPANLTRLDQLTWQLMQNGQSREAADLLLQRYPF--QGDARLSQTLMARLASLLESHPYLATPAKVAILSKPLPLAEQ 447 (987)
T ss_pred hcCCCCHHHHHHHHHHHHHcccHHHHHHHHHHhcCC--CcccccCHHHHHHHHHHHHhCCcccchHHHHHhccccccchh
Confidence 445888888889999999999988888888777762 12222200000 00 0 00
Q ss_pred HHHH--------------HHhCCchH--HHHhHHHHHHHHHHHHHHHHHHHHHHHHHhhccCcHHHHHHHHHHHHHHHHc
Q 006120 75 AGWS--------------RELGTSAE--ISEKRVFWEESTHDYAVFVKELGVLRNRADGARSREEAFDGHMAIGRVLYEH 138 (660)
Q Consensus 75 ~~~~--------------~~l~~~~~--~~~~~~~l~~~~~~~g~~~~Al~~l~~a~~~~~~~~~~~~~~~~lg~~~~~~ 138 (660)
..|. ..+...|. ....+..++.++.. ++..+|+..+.+++...++. .....+|..+...
T Consensus 448 ~~~~~~~~~~~~~~~~~~~al~~~p~~~~~~a~~~LG~~l~~-~~~~eAi~a~~~Al~~~Pd~----~~~L~lA~al~~~ 522 (987)
T PRK09782 448 RQWQSQLPGIADNCPAIVRLLGDMSPSYDAAAWNRLAKCYRD-TLPGVALYAWLQAEQRQPDA----WQHRAVAYQAYQV 522 (987)
T ss_pred HHHHhhhhhhhhhHHHHHHhcccCCCCCCHHHHHHHHHHHHh-CCcHHHHHHHHHHHHhCCch----HHHHHHHHHHHHC
Confidence 0011 11112233 55566777877776 78889999999999888754 2366778888899
Q ss_pred CCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhccCCCchhchHHHHHHHHHHHHHHCCCHH
Q 006120 139 QLFKEALVSFKRACELQPTDVRPHFRAGNCLYVLGRYREAKEEYLLALEAAETGGNQWAYLLPQIYVNLGIALEGEGMVL 218 (660)
Q Consensus 139 g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~la~~~~~~g~~~ 218 (660)
|++++|+..|++++...|. ...+..+|.++...|++++|..+++++++..|. ....+..++......|+++
T Consensus 523 Gr~eeAi~~~rka~~~~p~-~~a~~~la~all~~Gd~~eA~~~l~qAL~l~P~--------~~~l~~~La~~l~~~Gr~~ 593 (987)
T PRK09782 523 EDYATALAAWQKISLHDMS-NEDLLAAANTAQAAGNGAARDRWLQQAEQRGLG--------DNALYWWLHAQRYIPGQPE 593 (987)
T ss_pred CCHHHHHHHHHHHhccCCC-cHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCc--------cHHHHHHHHHHHHhCCCHH
Confidence 9999999999998877665 456788999999999999999999999999887 5566667777777889999
Q ss_pred HHHHHHHHHHHhCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhCCChHHHHHHHHHHHHh
Q 006120 219 SACEYYRESAILCPTHFRALKLLGSALFGVGEYRAAVKALEEAIFIKPDYADAHCDLASALHAMGEDERAIEVFQKAIDL 298 (660)
Q Consensus 219 ~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~ 298 (660)
+|+..++++++++|+ +.++.++|.++.+.|++++|+..|++++.++|+++.++.++|.++...|++++|+..+++++++
T Consensus 594 eAl~~~~~AL~l~P~-~~a~~~LA~~l~~lG~~deA~~~l~~AL~l~Pd~~~a~~nLG~aL~~~G~~eeAi~~l~~AL~l 672 (987)
T PRK09782 594 LALNDLTRSLNIAPS-ANAYVARATIYRQRHNVPAAVSDLRAALELEPNNSNYQAALGYALWDSGDIAQSREMLERAHKG 672 (987)
T ss_pred HHHHHHHHHHHhCCC-HHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh
Confidence 999999999999997 9999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHcccCCh-hHHHHHHHH
Q 006120 299 KPGHVDALYNLGGLYMDLGAGETEEAKKALKEALKMTNRV-ELHDAVSHL 347 (660)
Q Consensus 299 ~p~~~~a~~~La~~~~~~~~g~~~eA~~~~~~al~l~p~~-~~~~~~~~l 347 (660)
+|+++.++.++|.++..+ |++++|+.+|+++++++|+. .+....+.+
T Consensus 673 ~P~~~~a~~nLA~al~~l--Gd~~eA~~~l~~Al~l~P~~a~i~~~~g~~ 720 (987)
T PRK09782 673 LPDDPALIRQLAYVNQRL--DDMAATQHYARLVIDDIDNQALITPLTPEQ 720 (987)
T ss_pred CCCCHHHHHHHHHHHHHC--CCHHHHHHHHHHHHhcCCCCchhhhhhhHH
Confidence 999999999999999999 99999999999999999974 333333433
No 17
>KOG1155 consensus Anaphase-promoting complex (APC), Cdc23 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=99.86 E-value=7e-19 Score=176.99 Aligned_cols=253 Identities=19% Similarity=0.199 Sum_probs=220.5
Q ss_pred HHhHHHHHHHHHHHHHHHHHHHHHHHHHhhccCcHHHHHHH-------------------------------HHHHHHHH
Q 006120 88 SEKRVFWEESTHDYAVFVKELGVLRNRADGARSREEAFDGH-------------------------------MAIGRVLY 136 (660)
Q Consensus 88 ~~~~~~l~~~~~~~g~~~~Al~~l~~a~~~~~~~~~~~~~~-------------------------------~~lg~~~~ 136 (660)
.......+.+..+..++++|+..|++..+..|-.-+..+.+ ..+|+.|.
T Consensus 262 ~~i~~~~A~~~y~~rDfD~a~s~Feei~knDPYRl~dmdlySN~LYv~~~~skLs~LA~~v~~idKyR~ETCCiIaNYYS 341 (559)
T KOG1155|consen 262 MYIKTQIAAASYNQRDFDQAESVFEEIRKNDPYRLDDMDLYSNVLYVKNDKSKLSYLAQNVSNIDKYRPETCCIIANYYS 341 (559)
T ss_pred HHHHHHHHHHHhhhhhHHHHHHHHHHHHhcCCCcchhHHHHhHHHHHHhhhHHHHHHHHHHHHhccCCccceeeehhHHH
Confidence 34445557788999999999999999998877332222221 12377777
Q ss_pred HcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhccCCCchhchHHHHHHHHHHHHHHCCC
Q 006120 137 EHQLFKEALVSFKRACELQPTDVRPHFRAGNCLYVLGRYREAKEEYLLALEAAETGGNQWAYLLPQIYVNLGIALEGEGM 216 (660)
Q Consensus 137 ~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~la~~~~~~g~ 216 (660)
..++.++|+.+|+++++++|....+|..+|.-|..+.+...|++.|++|++++|. .-.+|+.+|+.|..++-
T Consensus 342 lr~eHEKAv~YFkRALkLNp~~~~aWTLmGHEyvEmKNt~AAi~sYRrAvdi~p~--------DyRAWYGLGQaYeim~M 413 (559)
T KOG1155|consen 342 LRSEHEKAVMYFKRALKLNPKYLSAWTLMGHEYVEMKNTHAAIESYRRAVDINPR--------DYRAWYGLGQAYEIMKM 413 (559)
T ss_pred HHHhHHHHHHHHHHHHhcCcchhHHHHHhhHHHHHhcccHHHHHHHHHHHhcCch--------hHHHHhhhhHHHHHhcc
Confidence 8899999999999999999999999999999999999999999999999999999 88999999999999999
Q ss_pred HHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhCCChHHHHHHHHHHH
Q 006120 217 VLSACEYYRESAILCPTHFRALKLLGSALFGVGEYRAAVKALEEAIFIKPDYADAHCDLASALHAMGEDERAIEVFQKAI 296 (660)
Q Consensus 217 ~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al 296 (660)
+.=|+-+|++|++..|.+...|..||.+|.+.++.++|+++|.+++.....+..++..||.+|.++++.++|..+|++.+
T Consensus 414 h~YaLyYfqkA~~~kPnDsRlw~aLG~CY~kl~~~~eAiKCykrai~~~dte~~~l~~LakLye~l~d~~eAa~~yek~v 493 (559)
T KOG1155|consen 414 HFYALYYFQKALELKPNDSRLWVALGECYEKLNRLEEAIKCYKRAILLGDTEGSALVRLAKLYEELKDLNEAAQYYEKYV 493 (559)
T ss_pred hHHHHHHHHHHHhcCCCchHHHHHHHHHHHHhccHHHHHHHHHHHHhccccchHHHHHHHHHHHHHHhHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999998889999999999999999999999999999
Q ss_pred Hh-------CCCCHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHcccCChhHHHHHHHHHHHHH
Q 006120 297 DL-------KPGHVDALYNLGGLYMDLGAGETEEAKKALKEALKMTNRVELHDAVSHLKQLQK 352 (660)
Q Consensus 297 ~~-------~p~~~~a~~~La~~~~~~~~g~~~eA~~~~~~al~l~p~~~~~~~~~~l~~l~~ 352 (660)
+. .|....+...|+.-+... +++++|..+..+++.-++ +..++...+.++.+
T Consensus 494 ~~~~~eg~~~~~t~ka~~fLA~~f~k~--~~~~~As~Ya~~~~~~~~--e~eeak~LlReir~ 552 (559)
T KOG1155|consen 494 EVSELEGEIDDETIKARLFLAEYFKKM--KDFDEASYYATLVLKGET--ECEEAKALLREIRK 552 (559)
T ss_pred HHHHhhcccchHHHHHHHHHHHHHHhh--cchHHHHHHHHHHhcCCc--hHHHHHHHHHHHHH
Confidence 83 465677888899999988 999999999999998844 34444444444433
No 18
>PRK11788 tetratricopeptide repeat protein; Provisional
Probab=99.85 E-value=6.3e-19 Score=189.14 Aligned_cols=279 Identities=14% Similarity=0.049 Sum_probs=233.5
Q ss_pred hhcCCcchhhccCchHHHHhccCchhhHHHHHHHHHHHHhhccCCcCCchHHhhhHHHHHHhCCchHHHHhHHHHHHHHH
Q 006120 20 KKQRTAAWAVSPNHGIVFDDTWKIVDDLEILVKRLKAKQAKDGKLKGDNSDAFSDAGWSRELGTSAEISEKRVFWEESTH 99 (660)
Q Consensus 20 ~~~~p~~~~~~~~lg~~y~~~~~~~~al~~~~~~~~~a~~~~~~l~~~~~~a~~~~~~~~~l~~~~~~~~~~~~l~~~~~ 99 (660)
...+|..+.++..+|.++...+++.+++..+.+.+.. +.. ........+..++.++.
T Consensus 62 l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~---------~~~--------------~~~~~~~~~~~La~~~~ 118 (389)
T PRK11788 62 LKVDPETVELHLALGNLFRRRGEVDRAIRIHQNLLSR---------PDL--------------TREQRLLALQELGQDYL 118 (389)
T ss_pred HhcCcccHHHHHHHHHHHHHcCcHHHHHHHHHHHhcC---------CCC--------------CHHHHHHHHHHHHHHHH
Confidence 3457888999999999999999999999988876651 110 00111234566788889
Q ss_pred HHHHHHHHHHHHHHHHhhccCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCH-----HHHHHHHHHHHHcCC
Q 006120 100 DYAVFVKELGVLRNRADGARSREEAFDGHMAIGRVLYEHQLFKEALVSFKRACELQPTDV-----RPHFRAGNCLYVLGR 174 (660)
Q Consensus 100 ~~g~~~~Al~~l~~a~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~-----~~~~~la~~~~~~g~ 174 (660)
..|++.+|+..+.++++..+. ...++..++.++...|++++|+..++++++..|... ..+..+|.++...|+
T Consensus 119 ~~g~~~~A~~~~~~~l~~~~~---~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~ 195 (389)
T PRK11788 119 KAGLLDRAEELFLQLVDEGDF---AEGALQQLLEIYQQEKDWQKAIDVAERLEKLGGDSLRVEIAHFYCELAQQALARGD 195 (389)
T ss_pred HCCCHHHHHHHHHHHHcCCcc---hHHHHHHHHHHHHHhchHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHHhCCC
Confidence 999999999999999876443 347889999999999999999999999999887653 356788999999999
Q ss_pred HHHHHHHHHHHHHHhccCCCchhchHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCc-HHHHHHHHHHHHHCCCHHH
Q 006120 175 YREAKEEYLLALEAAETGGNQWAYLLPQIYVNLGIALEGEGMVLSACEYYRESAILCPTH-FRALKLLGSALFGVGEYRA 253 (660)
Q Consensus 175 ~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~-~~~~~~lg~~~~~~g~~~~ 253 (660)
+++|+..++++++..|. ...++..+|.++...|++++|+..+++++..+|.+ ..++..++.++...|++++
T Consensus 196 ~~~A~~~~~~al~~~p~--------~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~~l~~~~~~~g~~~~ 267 (389)
T PRK11788 196 LDAARALLKKALAADPQ--------CVRASILLGDLALAQGDYAAAIEALERVEEQDPEYLSEVLPKLMECYQALGDEAE 267 (389)
T ss_pred HHHHHHHHHHHHhHCcC--------CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHChhhHHHHHHHHHHHHHHcCCHHH
Confidence 99999999999999887 67788999999999999999999999999998876 4678899999999999999
Q ss_pred HHHHHHHHHHhCCCCHHHHHHHHHHHHhCCChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHc
Q 006120 254 AVKALEEAIFIKPDYADAHCDLASALHAMGEDERAIEVFQKAIDLKPGHVDALYNLGGLYMDLGAGETEEAKKALKEALK 333 (660)
Q Consensus 254 A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~La~~~~~~~~g~~~eA~~~~~~al~ 333 (660)
|+..++++++..|+... +..++.++...|++++|+..++++++..|++......++..+...+.|+..+|+..+++.++
T Consensus 268 A~~~l~~~~~~~p~~~~-~~~la~~~~~~g~~~~A~~~l~~~l~~~P~~~~~~~l~~~~~~~~~~g~~~~a~~~~~~~~~ 346 (389)
T PRK11788 268 GLEFLRRALEEYPGADL-LLALAQLLEEQEGPEAAQALLREQLRRHPSLRGFHRLLDYHLAEAEEGRAKESLLLLRDLVG 346 (389)
T ss_pred HHHHHHHHHHhCCCchH-HHHHHHHHHHhCCHHHHHHHHHHHHHhCcCHHHHHHHHHHhhhccCCccchhHHHHHHHHHH
Confidence 99999999999998754 48999999999999999999999999999987665555544432212688899888888775
No 19
>COG3914 Spy Predicted O-linked N-acetylglucosamine transferase, SPINDLY family [Posttranslational modification, protein turnover, chaperones]
Probab=99.85 E-value=2e-20 Score=193.99 Aligned_cols=282 Identities=17% Similarity=0.145 Sum_probs=170.3
Q ss_pred CCHHHHHHHHHHHHHhCCCcHHHHHH--HHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhCCChHHHHHHH
Q 006120 215 GMVLSACEYYRESAILCPTHFRALKL--LGSALFGVGEYRAAVKALEEAIFIKPDYADAHCDLASALHAMGEDERAIEVF 292 (660)
Q Consensus 215 g~~~~A~~~~~~al~~~p~~~~~~~~--lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~ 292 (660)
+...-++..+...+.+++.++..+.. +...+...+....+......++..+|++..+..+|+.+....|....+...+
T Consensus 45 ~~~~~~~~a~~~~~~~~~~~~~llla~~lsi~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~L~~ale~~~~~~~~~~~~ 124 (620)
T COG3914 45 GLQALAIYALLLGIAINDVNPELLLAAFLSILLAPLADSTLAFLAKRIPLSVNPENCPAVQNLAAALELDGLQFLALADI 124 (620)
T ss_pred CchhHHHHHHHccCccCCCCHHHHHHHHHHhhccccccchhHHHHHhhhHhcCcccchHHHHHHHHHHHhhhHHHHHHHH
Confidence 34444566666666677777665433 4666666777777788888888888888888888887777776666665555
Q ss_pred HH-HHHhCCCCHHHHHHH------HHHHHHhcCCCHHHHHHHHHHHHcccCChhHHHHHHHHHHHHHHhccCCCCCCCCC
Q 006120 293 QK-AIDLKPGHVDALYNL------GGLYMDLGAGETEEAKKALKEALKMTNRVELHDAVSHLKQLQKKKSKGNRGTNGEG 365 (660)
Q Consensus 293 ~~-al~~~p~~~~a~~~L------a~~~~~~~~g~~~eA~~~~~~al~l~p~~~~~~~~~~l~~l~~~~~~~~~~~~~~~ 365 (660)
.+ +....|++......+ +.....+ |+..++....+++..+.|.. ......+...... .+.+... .
T Consensus 125 ~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~l--~~~~~~~~~l~~~~d~~p~~--~~~~~~~~~~r~~-~cs~~~~---~ 196 (620)
T COG3914 125 SEIAEWLSPDNAEFLGHLIRFYQLGRYLKLL--GRTAEAELALERAVDLLPKY--PRVLGALMTARQE-QCSWPEE---A 196 (620)
T ss_pred HHHHHhcCcchHHHHhhHHHHHHHHHHHHHh--ccHHHHHHHHHHHHHhhhhh--hhhHhHHHHHHHH-hccchhc---c
Confidence 44 777777776655544 6666666 77888888888888877764 2222222222111 1222110 0
Q ss_pred CccccCcchHHhhchhhhhhhhHHHHhcCHHHHHHHHHhccCHHHHHHHhhCCCccccccC------CCCCCCCccCcch
Q 006120 366 GFDIVEPSKFKTVGERTTVRQDLANALEIRAFQKITRLSRCDVELLKKEMSETDVPVSYSG------GGGPQKSIRKPNL 439 (660)
Q Consensus 366 ~~~~~~~~~~~~~~~~~~a~~~~~~al~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~------~~~~~~~ir~~~~ 439 (660)
...+.....+..... ......+...+........ .+.+... ...|....- ....++++|
T Consensus 197 ~tnl~~~~~~~~~~~-----~~~~~~~~d~p~~~l~~~~-----q~~~i~~-~~~~~~~~~~~~~~~~~~~~~rlR---- 261 (620)
T COG3914 197 PTNLLSQLALFLGIY-----GFSLAYLADDPLKNLAIAN-----QLLKILS-QNAPELVRFPIRDENIKRNGKRLR---- 261 (620)
T ss_pred chHHHHHHHHHhhcc-----ccchhhhccchhhhHHHHH-----HHHHHhc-ccCCCccccccchhhcccccccee----
Confidence 000000000000000 0000000000000000000 0011111 111111111 112244455
Q ss_pred HHHHHhhhccCCCcchHHHHHHHHHHhhhhccCCCcccccchhhhhhhcccCCCCHHHHHHhhhhhhcccccCCCC----
Q 006120 440 EEILRKFLHFLKPETFQGAVKAINERILSVLDETGSARVDLGMFYAILAPICSGSPEKRKRVAFDALLWRPVNEGS---- 515 (660)
Q Consensus 440 ~~~~~~~iGY~S~df~~H~v~~l~~~~l~~hDr~g~~~fev~~y~~~~~~~~~~~~~~r~r~~~d~~~~~~~~~~~---- 515 (660)
|||+|+||+.|+||+|+.+||++|||+ +|||++| +++|...+.++.||+..++ +|.+..+++
T Consensus 262 -------vGylS~dlr~Havg~l~~~v~e~hDRd---kfEvfay--~~g~~~~dal~~rI~a~~~--~~~~~~~~dd~e~ 327 (620)
T COG3914 262 -------VGYLSSDLRSHAVGFLLRWVFEYHDRD---KFEVFAY--SLGPPHTDALQERISAAVE--KWYPIGRMDDAEI 327 (620)
T ss_pred -------EEEeccccccchHHHHHHHHHHHhchh---heEEEEE--ecCCCCchhHHHHHHHhhh--heeccCCcCHHHH
Confidence 999999999999999999999999999 9999999 9998888899999999999 888888655
Q ss_pred ccchhccHHHHHHHhHHH
Q 006120 516 TQVRKVDAVRYIKLLRAV 533 (660)
Q Consensus 516 a~~i~~D~~~~l~dL~~~ 533 (660)
+..|+.|.||||+||..+
T Consensus 328 a~~I~~d~IdILvDl~g~ 345 (620)
T COG3914 328 ANAIRTDGIDILVDLDGH 345 (620)
T ss_pred HHHHHhcCCeEEEeccCc
Confidence 889999999999999843
No 20
>PRK11189 lipoprotein NlpI; Provisional
Probab=99.83 E-value=6.6e-18 Score=173.18 Aligned_cols=237 Identities=20% Similarity=0.100 Sum_probs=191.9
Q ss_pred HHHHHHHHHHHHHHhhcc-CcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHH
Q 006120 102 AVFVKELGVLRNRADGAR-SREEAFDGHMAIGRVLYEHQLFKEALVSFKRACELQPTDVRPHFRAGNCLYVLGRYREAKE 180 (660)
Q Consensus 102 g~~~~Al~~l~~a~~~~~-~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~ 180 (660)
+..+.++..+.+.+...+ +++.....|+.+|.++...|++++|+..|+++++.+|+++.+++.+|.++...|++++|+.
T Consensus 40 ~~~e~~i~~~~~~l~~~~~~~~~~a~~~~~~g~~~~~~g~~~~A~~~~~~Al~l~P~~~~a~~~lg~~~~~~g~~~~A~~ 119 (296)
T PRK11189 40 LQQEVILARLNQILASRDLTDEERAQLHYERGVLYDSLGLRALARNDFSQALALRPDMADAYNYLGIYLTQAGNFDAAYE 119 (296)
T ss_pred hHHHHHHHHHHHHHccccCCcHhhHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHCCCHHHHHH
Confidence 567788888888887655 4455578899999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHhccCCCchhchHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHCCCHHHHHHHHHH
Q 006120 181 EYLLALEAAETGGNQWAYLLPQIYVNLGIALEGEGMVLSACEYYRESAILCPTHFRALKLLGSALFGVGEYRAAVKALEE 260 (660)
Q Consensus 181 ~~~~al~~~p~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~ 260 (660)
.|+++++++|+ ...++.++|.++...|++++|+..++++++.+|+++..... ..+....+++++|+..+.+
T Consensus 120 ~~~~Al~l~P~--------~~~a~~~lg~~l~~~g~~~eA~~~~~~al~~~P~~~~~~~~-~~l~~~~~~~~~A~~~l~~ 190 (296)
T PRK11189 120 AFDSVLELDPT--------YNYAYLNRGIALYYGGRYELAQDDLLAFYQDDPNDPYRALW-LYLAESKLDPKQAKENLKQ 190 (296)
T ss_pred HHHHHHHhCCC--------CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHH-HHHHHccCCHHHHHHHHHH
Confidence 99999999999 78899999999999999999999999999999998742221 2234567899999999988
Q ss_pred HHHhCCCCHHHHHHHHHHHHhCCChHHHHHHHHHH-------HHhCCCCHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHc
Q 006120 261 AIFIKPDYADAHCDLASALHAMGEDERAIEVFQKA-------IDLKPGHVDALYNLGGLYMDLGAGETEEAKKALKEALK 333 (660)
Q Consensus 261 al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~a-------l~~~p~~~~a~~~La~~~~~~~~g~~~eA~~~~~~al~ 333 (660)
++...+.. .|. .+.++..+|+..++ ..++.+ .++.|...++|+++|.++... |++++|+.+|+++++
T Consensus 191 ~~~~~~~~--~~~-~~~~~~~lg~~~~~-~~~~~~~~~~~~~~~l~~~~~ea~~~Lg~~~~~~--g~~~~A~~~~~~Al~ 264 (296)
T PRK11189 191 RYEKLDKE--QWG-WNIVEFYLGKISEE-TLMERLKAGATDNTELAERLCETYFYLAKYYLSL--GDLDEAAALFKLALA 264 (296)
T ss_pred HHhhCCcc--ccH-HHHHHHHccCCCHH-HHHHHHHhcCCCcHHHHHHHHHHHHHHHHHHHHC--CCHHHHHHHHHHHHH
Confidence 77654322 222 35666667776544 233333 356677789999999999999 999999999999999
Q ss_pred ccCC--hhHHHHHHHHHHHHHH
Q 006120 334 MTNR--VELHDAVSHLKQLQKK 353 (660)
Q Consensus 334 l~p~--~~~~~~~~~l~~l~~~ 353 (660)
++|. .+...++..+..+...
T Consensus 265 ~~~~~~~e~~~~~~e~~~~~~~ 286 (296)
T PRK11189 265 NNVYNFVEHRYALLELALLGQD 286 (296)
T ss_pred hCCchHHHHHHHHHHHHHHHhh
Confidence 9964 4445555555555443
No 21
>TIGR02521 type_IV_pilW type IV pilus biogenesis/stability protein PilW. Members of this family are designated PilF in ref (PubMed:8973346) and PilW in ref (PubMed:15612916). This outer membrane protein is required both for pilus stability and for pilus function such as adherence to human cells. Members of this family contain copies of the TPR (tetratricopeptide repeat) domain.
Probab=99.82 E-value=7.3e-18 Score=166.12 Aligned_cols=206 Identities=18% Similarity=0.187 Sum_probs=190.8
Q ss_pred CcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhccCCCchhch
Q 006120 120 SREEAFDGHMAIGRVLYEHQLFKEALVSFKRACELQPTDVRPHFRAGNCLYVLGRYREAKEEYLLALEAAETGGNQWAYL 199 (660)
Q Consensus 120 ~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~ 199 (660)
+.......+..+|..+...|++++|+..++++++.+|++..++..+|.++...|++++|++.++++++..|.
T Consensus 26 ~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~-------- 97 (234)
T TIGR02521 26 DRNKAAKIRVQLALGYLEQGDLEVAKENLDKALEHDPDDYLAYLALALYYQQLGELEKAEDSFRRALTLNPN-------- 97 (234)
T ss_pred cCCcHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCC--------
Confidence 334446889999999999999999999999999999999999999999999999999999999999999988
Q ss_pred HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC--CCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHH
Q 006120 200 LPQIYVNLGIALEGEGMVLSACEYYRESAILC--PTHFRALKLLGSALFGVGEYRAAVKALEEAIFIKPDYADAHCDLAS 277 (660)
Q Consensus 200 ~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~--p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~ 277 (660)
...++.++|.++...|++++|+..+++++... +.....+..+|.++...|++++|...+.+++...|++...+..+|.
T Consensus 98 ~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~la~ 177 (234)
T TIGR02521 98 NGDVLNNYGTFLCQQGKYEQAMQQFEQAIEDPLYPQPARSLENAGLCALKAGDFDKAEKYLTRALQIDPQRPESLLELAE 177 (234)
T ss_pred CHHHHHHHHHHHHHcccHHHHHHHHHHHHhccccccchHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCChHHHHHHHH
Confidence 67889999999999999999999999999854 4567789999999999999999999999999999999999999999
Q ss_pred HHHhCCChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHccc
Q 006120 278 ALHAMGEDERAIEVFQKAIDLKPGHVDALYNLGGLYMDLGAGETEEAKKALKEALKMT 335 (660)
Q Consensus 278 ~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~La~~~~~~~~g~~~eA~~~~~~al~l~ 335 (660)
++...|++++|+..+++++...|.++..+..++.++... |+.++|..+.+.+....
T Consensus 178 ~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~a~~~~~~~~~~~ 233 (234)
T TIGR02521 178 LYYLRGQYKDARAYLERYQQTYNQTAESLWLGIRIARAL--GDVAAAQRYGAQLQKLF 233 (234)
T ss_pred HHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHH--hhHHHHHHHHHHHHhhC
Confidence 999999999999999999999999999999999999988 99999999988876654
No 22
>PRK10049 pgaA outer membrane protein PgaA; Provisional
Probab=99.82 E-value=2.8e-17 Score=190.01 Aligned_cols=317 Identities=11% Similarity=0.024 Sum_probs=239.3
Q ss_pred hHhhhcCCcchhhccCchHHHHhccCchhhHHHHHHHHHHHHhhccCCcCCchHHhhhHHHHHHhCCchHH---------
Q 006120 17 ESQKKQRTAAWAVSPNHGIVFDDTWKIVDDLEILVKRLKAKQAKDGKLKGDNSDAFSDAGWSRELGTSAEI--------- 87 (660)
Q Consensus 17 ~~~~~~~p~~~~~~~~lg~~y~~~~~~~~al~~~~~~~~~a~~~~~~l~~~~~~a~~~~~~~~~l~~~~~~--------- 87 (660)
+...+.+|.... +..+|.++...++..+++..+++.++ ..|+...++..+.........++.
T Consensus 107 ~~~l~~~P~~~~-~~~la~~l~~~g~~~~Al~~l~~al~--------~~P~~~~~~~~la~~l~~~~~~e~Al~~l~~~~ 177 (765)
T PRK10049 107 KQLVSGAPDKAN-LLALAYVYKRAGRHWDELRAMTQALP--------RAPQTQQYPTEYVQALRNNRLSAPALGAIDDAN 177 (765)
T ss_pred HHHHHhCCCCHH-HHHHHHHHHHCCCHHHHHHHHHHHHH--------hCCCCHHHHHHHHHHHHHCCChHHHHHHHHhCC
Confidence 334455777777 88888888888888888888888888 466666655444433322222110
Q ss_pred ---------------HHhHHHHHHHHHHHHHH---HHHHHHHHHHHhhccCcH----HHHHHHHHHHHHHHHcCCHHHHH
Q 006120 88 ---------------SEKRVFWEESTHDYAVF---VKELGVLRNRADGARSRE----EAFDGHMAIGRVLYEHQLFKEAL 145 (660)
Q Consensus 88 ---------------~~~~~~l~~~~~~~g~~---~~Al~~l~~a~~~~~~~~----~~~~~~~~lg~~~~~~g~~~~A~ 145 (660)
......+.......+++ ++|+..++..++..+..+ ....+.......+...|++++|+
T Consensus 178 ~~p~~~~~l~~~~~~~~~r~~~~~~~~~~~r~~~ad~Al~~~~~ll~~~~~~p~~~~~~~~a~~d~l~~Ll~~g~~~eA~ 257 (765)
T PRK10049 178 LTPAEKRDLEADAAAELVRLSFMPTRSEKERYAIADRALAQYDALEALWHDNPDATADYQRARIDRLGALLARDRYKDVI 257 (765)
T ss_pred CCHHHHHHHHHHHHHHHHHhhcccccChhHHHHHHHHHHHHHHHHHhhcccCCccchHHHHHHHHHHHHHHHhhhHHHHH
Confidence 00111111111122334 778888888886644332 22233333233456789999999
Q ss_pred HHHHHHHHhCCCCH-HHHHHHHHHHHHcCCHHHHHHHHHHHHHHhccCCCchhchHHHHHHHHHHHHHHCCCHHHHHHHH
Q 006120 146 VSFKRACELQPTDV-RPHFRAGNCLYVLGRYREAKEEYLLALEAAETGGNQWAYLLPQIYVNLGIALEGEGMVLSACEYY 224 (660)
Q Consensus 146 ~~~~~al~~~p~~~-~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~ 224 (660)
..|+++++..|..+ .+...+|.++..+|++++|+..|+++++..|..... .......++.++...|++++|+..+
T Consensus 258 ~~~~~ll~~~~~~P~~a~~~la~~yl~~g~~e~A~~~l~~~l~~~p~~~~~----~~~~~~~L~~a~~~~g~~~eA~~~l 333 (765)
T PRK10049 258 SEYQRLKAEGQIIPPWAQRWVASAYLKLHQPEKAQSILTELFYHPETIADL----SDEELADLFYSLLESENYPGALTVT 333 (765)
T ss_pred HHHHHhhccCCCCCHHHHHHHHHHHHhcCCcHHHHHHHHHHhhcCCCCCCC----ChHHHHHHHHHHHhcccHHHHHHHH
Confidence 99999998864322 344456999999999999999999999877653211 2356677788889999999999999
Q ss_pred HHHHHhCCC---------------cHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhCCChHHHH
Q 006120 225 RESAILCPT---------------HFRALKLLGSALFGVGEYRAAVKALEEAIFIKPDYADAHCDLASALHAMGEDERAI 289 (660)
Q Consensus 225 ~~al~~~p~---------------~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~ 289 (660)
+++....|. ...++..++.++...|++++|+..+++++...|++..++..+|.++...|++++|+
T Consensus 334 ~~~~~~~P~~~~~~~~~~~~p~~~~~~a~~~~a~~l~~~g~~~eA~~~l~~al~~~P~n~~l~~~lA~l~~~~g~~~~A~ 413 (765)
T PRK10049 334 AHTINNSPPFLRLYGSPTSIPNDDWLQGQSLLSQVAKYSNDLPQAEMRARELAYNAPGNQGLRIDYASVLQARGWPRAAE 413 (765)
T ss_pred HHHhhcCCceEeecCCCCCCCCchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCCHHHHH
Confidence 999998763 24577889999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHhCCCCHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHcccCChhHHHHHHHHH
Q 006120 290 EVFQKAIDLKPGHVDALYNLGGLYMDLGAGETEEAKKALKEALKMTNRVELHDAVSHLK 348 (660)
Q Consensus 290 ~~~~~al~~~p~~~~a~~~La~~~~~~~~g~~~eA~~~~~~al~l~p~~~~~~~~~~l~ 348 (660)
..++++++++|++..+++.+|.++... |++++|...++++++..|+......+....
T Consensus 414 ~~l~~al~l~Pd~~~l~~~~a~~al~~--~~~~~A~~~~~~ll~~~Pd~~~~~~~~~~~ 470 (765)
T PRK10049 414 NELKKAEVLEPRNINLEVEQAWTALDL--QEWRQMDVLTDDVVAREPQDPGVQRLARAR 470 (765)
T ss_pred HHHHHHHhhCCCChHHHHHHHHHHHHh--CCHHHHHHHHHHHHHhCCCCHHHHHHHHHH
Confidence 999999999999999999999999998 999999999999999999877655554443
No 23
>KOG0547 consensus Translocase of outer mitochondrial membrane complex, subunit TOM70/TOM72 [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.81 E-value=1.8e-18 Score=174.95 Aligned_cols=238 Identities=16% Similarity=0.193 Sum_probs=218.2
Q ss_pred HHHhHHHHHHHHHHHHHHHHHHHHHHHHHhhccCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHH
Q 006120 87 ISEKRVFWEESTHDYAVFVKELGVLRNRADGARSREEAFDGHMAIGRVLYEHQLFKEALVSFKRACELQPTDVRPHFRAG 166 (660)
Q Consensus 87 ~~~~~~~l~~~~~~~g~~~~Al~~l~~a~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la 166 (660)
...+..+.|....-.|+...|...++.++...+... ..|..+|.+|...++-++-...|.++..++|+++++|+..|
T Consensus 325 ~A~al~~~gtF~fL~g~~~~a~~d~~~~I~l~~~~~---~lyI~~a~~y~d~~~~~~~~~~F~~A~~ldp~n~dvYyHRg 401 (606)
T KOG0547|consen 325 MAEALLLRGTFHFLKGDSLGAQEDFDAAIKLDPAFN---SLYIKRAAAYADENQSEKMWKDFNKAEDLDPENPDVYYHRG 401 (606)
T ss_pred HHHHHHHhhhhhhhcCCchhhhhhHHHHHhcCcccc---hHHHHHHHHHhhhhccHHHHHHHHHHHhcCCCCCchhHhHH
Confidence 345566667777788899999999999999888765 34889999999999999999999999999999999999999
Q ss_pred HHHHHcCCHHHHHHHHHHHHHHhccCCCchhchHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHH
Q 006120 167 NCLYVLGRYREAKEEYLLALEAAETGGNQWAYLLPQIYVNLGIALEGEGMVLSACEYYRESAILCPTHFRALKLLGSALF 246 (660)
Q Consensus 167 ~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~ 246 (660)
.+++-++++++|+.-|++++.++|. +...+..++.+.++++++++++..|+.+.+..|+.++++...|.++.
T Consensus 402 Qm~flL~q~e~A~aDF~Kai~L~pe--------~~~~~iQl~~a~Yr~~k~~~~m~~Fee~kkkFP~~~Evy~~fAeiLt 473 (606)
T KOG0547|consen 402 QMRFLLQQYEEAIADFQKAISLDPE--------NAYAYIQLCCALYRQHKIAESMKTFEEAKKKFPNCPEVYNLFAEILT 473 (606)
T ss_pred HHHHHHHHHHHHHHHHHHHhhcChh--------hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCchHHHHHHHHHh
Confidence 9999999999999999999999999 89999999999999999999999999999999999999999999999
Q ss_pred HCCCHHHHHHHHHHHHHhCCC------CHHHHHHHHHHHH-hCCChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCC
Q 006120 247 GVGEYRAAVKALEEAIFIKPD------YADAHCDLASALH-AMGEDERAIEVFQKAIDLKPGHVDALYNLGGLYMDLGAG 319 (660)
Q Consensus 247 ~~g~~~~A~~~~~~al~~~p~------~~~~~~~la~~~~-~~g~~~~A~~~~~~al~~~p~~~~a~~~La~~~~~~~~g 319 (660)
.+++++.|++.|..|+++.|. ++..+.+.|.+.. -.+++..|+..+++|++++|..-.++..||.+..++ |
T Consensus 474 DqqqFd~A~k~YD~ai~LE~~~~~~~v~~~plV~Ka~l~~qwk~d~~~a~~Ll~KA~e~Dpkce~A~~tlaq~~lQ~--~ 551 (606)
T KOG0547|consen 474 DQQQFDKAVKQYDKAIELEPREHLIIVNAAPLVHKALLVLQWKEDINQAENLLRKAIELDPKCEQAYETLAQFELQR--G 551 (606)
T ss_pred hHHhHHHHHHHHHHHHhhccccccccccchhhhhhhHhhhchhhhHHHHHHHHHHHHccCchHHHHHHHHHHHHHHH--h
Confidence 999999999999999999998 5666666665443 458999999999999999999999999999999999 9
Q ss_pred CHHHHHHHHHHHHcccCC
Q 006120 320 ETEEAKKALKEALKMTNR 337 (660)
Q Consensus 320 ~~~eA~~~~~~al~l~p~ 337 (660)
+.++|+++|+++..+...
T Consensus 552 ~i~eAielFEksa~lArt 569 (606)
T KOG0547|consen 552 KIDEAIELFEKSAQLART 569 (606)
T ss_pred hHHHHHHHHHHHHHHHHh
Confidence 999999999999988754
No 24
>PRK12370 invasion protein regulator; Provisional
Probab=99.81 E-value=1e-17 Score=186.70 Aligned_cols=219 Identities=16% Similarity=-0.003 Sum_probs=167.0
Q ss_pred HHHHHHHHHHHHHHHhhccCcHHHHHHHHHHHHHHHHc---------CCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH
Q 006120 101 YAVFVKELGVLRNRADGARSREEAFDGHMAIGRVLYEH---------QLFKEALVSFKRACELQPTDVRPHFRAGNCLYV 171 (660)
Q Consensus 101 ~g~~~~Al~~l~~a~~~~~~~~~~~~~~~~lg~~~~~~---------g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~ 171 (660)
.+.+.+|+..++++++..|+.. .++..+|.++... +++++|+..++++++++|+++.++..+|.++..
T Consensus 274 ~~~~~~A~~~~~~Al~ldP~~a---~a~~~La~~~~~~~~~g~~~~~~~~~~A~~~~~~Al~ldP~~~~a~~~lg~~~~~ 350 (553)
T PRK12370 274 PYSLQQALKLLTQCVNMSPNSI---APYCALAECYLSMAQMGIFDKQNAMIKAKEHAIKATELDHNNPQALGLLGLINTI 350 (553)
T ss_pred HHHHHHHHHHHHHHHhcCCccH---HHHHHHHHHHHHHHHcCCcccchHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHH
Confidence 3556788888888887776654 5666667665532 347788888888888888888888888888888
Q ss_pred cCCHHHHHHHHHHHHHHhccCCCchhchHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHCCCH
Q 006120 172 LGRYREAKEEYLLALEAAETGGNQWAYLLPQIYVNLGIALEGEGMVLSACEYYRESAILCPTHFRALKLLGSALFGVGEY 251 (660)
Q Consensus 172 ~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~ 251 (660)
.|++++|+..|+++++++|+ .+.+++.+|.++...|++++|+..++++++++|.++..+..++.+++..|++
T Consensus 351 ~g~~~~A~~~~~~Al~l~P~--------~~~a~~~lg~~l~~~G~~~eAi~~~~~Al~l~P~~~~~~~~~~~~~~~~g~~ 422 (553)
T PRK12370 351 HSEYIVGSLLFKQANLLSPI--------SADIKYYYGWNLFMAGQLEEALQTINECLKLDPTRAAAGITKLWITYYHTGI 422 (553)
T ss_pred ccCHHHHHHHHHHHHHhCCC--------CHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCChhhHHHHHHHHHhccCH
Confidence 88888888888888888887 6777888888888888888888888888888888777666666667777888
Q ss_pred HHHHHHHHHHHHhC-CCCHHHHHHHHHHHHhCCChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCCCHHHHHHHHHH
Q 006120 252 RAAVKALEEAIFIK-PDYADAHCDLASALHAMGEDERAIEVFQKAIDLKPGHVDALYNLGGLYMDLGAGETEEAKKALKE 330 (660)
Q Consensus 252 ~~A~~~~~~al~~~-p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~La~~~~~~~~g~~~eA~~~~~~ 330 (660)
++|+..+++++... |+++.++.++|.++..+|++++|+..+++.....|....++..++..|... | ++|...+++
T Consensus 423 eeA~~~~~~~l~~~~p~~~~~~~~la~~l~~~G~~~eA~~~~~~~~~~~~~~~~~~~~l~~~~~~~--g--~~a~~~l~~ 498 (553)
T PRK12370 423 DDAIRLGDELRSQHLQDNPILLSMQVMFLSLKGKHELARKLTKEISTQEITGLIAVNLLYAEYCQN--S--ERALPTIRE 498 (553)
T ss_pred HHHHHHHHHHHHhccccCHHHHHHHHHHHHhCCCHHHHHHHHHHhhhccchhHHHHHHHHHHHhcc--H--HHHHHHHHH
Confidence 88888888887764 667777888888888888888888888887777777777777777777765 5 366666666
Q ss_pred HHcc
Q 006120 331 ALKM 334 (660)
Q Consensus 331 al~l 334 (660)
.++.
T Consensus 499 ll~~ 502 (553)
T PRK12370 499 FLES 502 (553)
T ss_pred HHHH
Confidence 5543
No 25
>KOG1173 consensus Anaphase-promoting complex (APC), Cdc16 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=99.80 E-value=6.2e-18 Score=174.38 Aligned_cols=208 Identities=21% Similarity=0.263 Sum_probs=192.7
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhccCCCchhchHHHHH
Q 006120 125 FDGHMAIGRVLYEHQLFKEALVSFKRACELQPTDVRPHFRAGNCLYVLGRYREAKEEYLLALEAAETGGNQWAYLLPQIY 204 (660)
Q Consensus 125 ~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~ 204 (660)
+..|+..|..|...|++.+|..+|.++..++|....+|...|..+...|+.++|+..|..|-++.|. .....
T Consensus 312 a~sW~aVg~YYl~i~k~seARry~SKat~lD~~fgpaWl~fghsfa~e~EhdQAmaaY~tAarl~~G--------~hlP~ 383 (611)
T KOG1173|consen 312 ALSWFAVGCYYLMIGKYSEARRYFSKATTLDPTFGPAWLAFGHSFAGEGEHDQAMAAYFTAARLMPG--------CHLPS 383 (611)
T ss_pred CcchhhHHHHHHHhcCcHHHHHHHHHHhhcCccccHHHHHHhHHhhhcchHHHHHHHHHHHHHhccC--------CcchH
Confidence 4678999999999999999999999999999999999999999999999999999999999999998 44556
Q ss_pred HHHHHHHHHCCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCC-------CHHHHHHHHH
Q 006120 205 VNLGIALEGEGMVLSACEYYRESAILCPTHFRALKLLGSALFGVGEYRAAVKALEEAIFIKPD-------YADAHCDLAS 277 (660)
Q Consensus 205 ~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~-------~~~~~~~la~ 277 (660)
+.+|.-|...+++..|..+|.+|+.+.|.++-.+..+|.+.+..+.|.+|..+|+.++..-+. -...+.|||.
T Consensus 384 LYlgmey~~t~n~kLAe~Ff~~A~ai~P~Dplv~~Elgvvay~~~~y~~A~~~f~~~l~~ik~~~~e~~~w~p~~~NLGH 463 (611)
T KOG1173|consen 384 LYLGMEYMRTNNLKLAEKFFKQALAIAPSDPLVLHELGVVAYTYEEYPEALKYFQKALEVIKSVLNEKIFWEPTLNNLGH 463 (611)
T ss_pred HHHHHHHHHhccHHHHHHHHHHHHhcCCCcchhhhhhhheeehHhhhHHHHHHHHHHHHHhhhccccccchhHHHHhHHH
Confidence 778999999999999999999999999999999999999999999999999999999954221 2356899999
Q ss_pred HHHhCCChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHcccCChhHHH
Q 006120 278 ALHAMGEDERAIEVFQKAIDLKPGHVDALYNLGGLYMDLGAGETEEAKKALKEALKMTNRVELHD 342 (660)
Q Consensus 278 ~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~La~~~~~~~~g~~~eA~~~~~~al~l~p~~~~~~ 342 (660)
++.+++++++|+.++++++.+.|.++.++..+|.+|..+ |+++.|+.+|.++|.+.|+.....
T Consensus 464 ~~Rkl~~~~eAI~~~q~aL~l~~k~~~~~asig~iy~ll--gnld~Aid~fhKaL~l~p~n~~~~ 526 (611)
T KOG1173|consen 464 AYRKLNKYEEAIDYYQKALLLSPKDASTHASIGYIYHLL--GNLDKAIDHFHKALALKPDNIFIS 526 (611)
T ss_pred HHHHHhhHHHHHHHHHHHHHcCCCchhHHHHHHHHHHHh--cChHHHHHHHHHHHhcCCccHHHH
Confidence 999999999999999999999999999999999999999 999999999999999999975533
No 26
>COG3063 PilF Tfp pilus assembly protein PilF [Cell motility and secretion / Intracellular trafficking and secretion]
Probab=99.80 E-value=3e-17 Score=152.20 Aligned_cols=210 Identities=19% Similarity=0.196 Sum_probs=194.1
Q ss_pred CcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhccCCCchhch
Q 006120 120 SREEAFDGHMAIGRVLYEHQLFKEALVSFKRACELQPTDVRPHFRAGNCLYVLGRYREAKEEYLLALEAAETGGNQWAYL 199 (660)
Q Consensus 120 ~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~ 199 (660)
+......+...+|.-|+..|++..|...++++++.+|+...+|..+|.+|...|+.+.|.+.|++|+++.|+
T Consensus 30 ~~~~aa~arlqLal~YL~~gd~~~A~~nlekAL~~DPs~~~a~~~~A~~Yq~~Ge~~~A~e~YrkAlsl~p~-------- 101 (250)
T COG3063 30 DRNEAAKARLQLALGYLQQGDYAQAKKNLEKALEHDPSYYLAHLVRAHYYQKLGENDLADESYRKALSLAPN-------- 101 (250)
T ss_pred cHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHcCChhhHHHHHHHHHhcCCC--------
Confidence 334556788999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh--CCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHH
Q 006120 200 LPQIYVNLGIALEGEGMVLSACEYYRESAIL--CPTHFRALKLLGSALFGVGEYRAAVKALEEAIFIKPDYADAHCDLAS 277 (660)
Q Consensus 200 ~~~~~~~la~~~~~~g~~~~A~~~~~~al~~--~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~ 277 (660)
...+++|.|..+..+|++++|...|++|+.. .+..+..+.|+|.|..+.|+++.|..+|+++++++|+.+.....++.
T Consensus 102 ~GdVLNNYG~FLC~qg~~~eA~q~F~~Al~~P~Y~~~s~t~eN~G~Cal~~gq~~~A~~~l~raL~~dp~~~~~~l~~a~ 181 (250)
T COG3063 102 NGDVLNNYGAFLCAQGRPEEAMQQFERALADPAYGEPSDTLENLGLCALKAGQFDQAEEYLKRALELDPQFPPALLELAR 181 (250)
T ss_pred ccchhhhhhHHHHhCCChHHHHHHHHHHHhCCCCCCcchhhhhhHHHHhhcCCchhHHHHHHHHHHhCcCCChHHHHHHH
Confidence 7899999999999999999999999999875 35668899999999999999999999999999999999999999999
Q ss_pred HHHhCCChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHcccCChh
Q 006120 278 ALHAMGEDERAIEVFQKAIDLKPGHVDALYNLGGLYMDLGAGETEEAKKALKEALKMTNRVE 339 (660)
Q Consensus 278 ~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~La~~~~~~~~g~~~eA~~~~~~al~l~p~~~ 339 (660)
..++.|++..|..++++.....+-..+.+.....+-... |+-+.|.++=.+.....|...
T Consensus 182 ~~~~~~~y~~Ar~~~~~~~~~~~~~A~sL~L~iriak~~--gd~~~a~~Y~~qL~r~fP~s~ 241 (250)
T COG3063 182 LHYKAGDYAPARLYLERYQQRGGAQAESLLLGIRIAKRL--GDRAAAQRYQAQLQRLFPYSE 241 (250)
T ss_pred HHHhcccchHHHHHHHHHHhcccccHHHHHHHHHHHHHh--ccHHHHHHHHHHHHHhCCCcH
Confidence 999999999999999999988887888888888888888 999999988888888888743
No 27
>KOG0547 consensus Translocase of outer mitochondrial membrane complex, subunit TOM70/TOM72 [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.80 E-value=2.2e-17 Score=167.16 Aligned_cols=219 Identities=16% Similarity=0.174 Sum_probs=166.7
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhccCCCchhchHHHHH
Q 006120 125 FDGHMAIGRVLYEHQLFKEALVSFKRACELQPTDVRPHFRAGNCLYVLGRYREAKEEYLLALEAAETGGNQWAYLLPQIY 204 (660)
Q Consensus 125 ~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~ 204 (660)
+.++...|..++-.|++-.|...|..++.++|.....+..+|.+|....+.++..+.|.+|..++|. ++.+|
T Consensus 326 A~al~~~gtF~fL~g~~~~a~~d~~~~I~l~~~~~~lyI~~a~~y~d~~~~~~~~~~F~~A~~ldp~--------n~dvY 397 (606)
T KOG0547|consen 326 AEALLLRGTFHFLKGDSLGAQEDFDAAIKLDPAFNSLYIKRAAAYADENQSEKMWKDFNKAEDLDPE--------NPDVY 397 (606)
T ss_pred HHHHHHhhhhhhhcCCchhhhhhHHHHHhcCcccchHHHHHHHHHhhhhccHHHHHHHHHHHhcCCC--------CCchh
Confidence 3455566777777778888888888888888877777888888888888888888888888888887 66777
Q ss_pred HHHHHHHHHCCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhCCC
Q 006120 205 VNLGIALEGEGMVLSACEYYRESAILCPTHFRALKLLGSALFGVGEYRAAVKALEEAIFIKPDYADAHCDLASALHAMGE 284 (660)
Q Consensus 205 ~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~ 284 (660)
+..|+++.-++++++|+.-|++++.++|++.-++..++.+.+++++++++...|+.++...|+.++++...|.++..+++
T Consensus 398 yHRgQm~flL~q~e~A~aDF~Kai~L~pe~~~~~iQl~~a~Yr~~k~~~~m~~Fee~kkkFP~~~Evy~~fAeiLtDqqq 477 (606)
T KOG0547|consen 398 YHRGQMRFLLQQYEEAIADFQKAISLDPENAYAYIQLCCALYRQHKIAESMKTFEEAKKKFPNCPEVYNLFAEILTDQQQ 477 (606)
T ss_pred HhHHHHHHHHHHHHHHHHHHHHHhhcChhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCchHHHHHHHHHhhHHh
Confidence 88888888888888888888888888888888888888888888888888888888888888888888888888888888
Q ss_pred hHHHHHHHHHHHHhCCC------CHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHcccCChhH-HHHHHHHHHHHH
Q 006120 285 DERAIEVFQKAIDLKPG------HVDALYNLGGLYMDLGAGETEEAKKALKEALKMTNRVEL-HDAVSHLKQLQK 352 (660)
Q Consensus 285 ~~~A~~~~~~al~~~p~------~~~a~~~La~~~~~~~~g~~~eA~~~~~~al~l~p~~~~-~~~~~~l~~l~~ 352 (660)
+++|++.|.+++.+.|. ++..+...|.+..+.. +++..|+..+++|++++|..+. ...++.++-.++
T Consensus 478 Fd~A~k~YD~ai~LE~~~~~~~v~~~plV~Ka~l~~qwk-~d~~~a~~Ll~KA~e~Dpkce~A~~tlaq~~lQ~~ 551 (606)
T KOG0547|consen 478 FDKAVKQYDKAIELEPREHLIIVNAAPLVHKALLVLQWK-EDINQAENLLRKAIELDPKCEQAYETLAQFELQRG 551 (606)
T ss_pred HHHHHHHHHHHHhhccccccccccchhhhhhhHhhhchh-hhHHHHHHHHHHHHccCchHHHHHHHHHHHHHHHh
Confidence 88888888888888877 5556666665555433 7788888888888888887553 344444443333
No 28
>PRK10049 pgaA outer membrane protein PgaA; Provisional
Probab=99.80 E-value=8.2e-17 Score=186.21 Aligned_cols=296 Identities=14% Similarity=0.043 Sum_probs=190.7
Q ss_pred cCCcchhhccCchHHHHhccCchhhHHHHHHHHHHHHhhccCCcCCchHHhhhHHHHH---------------HhCCchH
Q 006120 22 QRTAAWAVSPNHGIVFDDTWKIVDDLEILVKRLKAKQAKDGKLKGDNSDAFSDAGWSR---------------ELGTSAE 86 (660)
Q Consensus 22 ~~p~~~~~~~~lg~~y~~~~~~~~al~~~~~~~~~a~~~~~~l~~~~~~a~~~~~~~~---------------~l~~~~~ 86 (660)
.+|....++.++|.++...+++.++++.+++.++ +.|.+..+...+.... .+...|.
T Consensus 44 ~~~~~a~~~~~lA~~~~~~g~~~~A~~~~~~al~--------~~P~~~~a~~~la~~l~~~g~~~eA~~~l~~~l~~~P~ 115 (765)
T PRK10049 44 HMQLPARGYAAVAVAYRNLKQWQNSLTLWQKALS--------LEPQNDDYQRGLILTLADAGQYDEALVKAKQLVSGAPD 115 (765)
T ss_pred hCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH--------hCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCC
Confidence 3677777899999999999999999999999888 3444443332221111 0111222
Q ss_pred HHHhHHHHHHHHHHHHHHHHHHHHHHHHHhhccCcHHHHHHHHHHHHHHHHcCCHHHHHH--------------------
Q 006120 87 ISEKRVFWEESTHDYAVFVKELGVLRNRADGARSREEAFDGHMAIGRVLYEHQLFKEALV-------------------- 146 (660)
Q Consensus 87 ~~~~~~~l~~~~~~~g~~~~Al~~l~~a~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~-------------------- 146 (660)
... +..++.++...|++.+|+..++++++..|+.+ .++..+|.++...+..++|+.
T Consensus 116 ~~~-~~~la~~l~~~g~~~~Al~~l~~al~~~P~~~---~~~~~la~~l~~~~~~e~Al~~l~~~~~~p~~~~~l~~~~~ 191 (765)
T PRK10049 116 KAN-LLALAYVYKRAGRHWDELRAMTQALPRAPQTQ---QYPTEYVQALRNNRLSAPALGAIDDANLTPAEKRDLEADAA 191 (765)
T ss_pred CHH-HHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCH---HHHHHHHHHHHHCCChHHHHHHHHhCCCCHHHHHHHHHHHH
Confidence 223 44445555555555555555555555555443 333344444444333332222
Q ss_pred --------------------------HHHHHHHhCCCCHH-------HHHHHHHHHHHcCCHHHHHHHHHHHHHHhccCC
Q 006120 147 --------------------------SFKRACELQPTDVR-------PHFRAGNCLYVLGRYREAKEEYLLALEAAETGG 193 (660)
Q Consensus 147 --------------------------~~~~al~~~p~~~~-------~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~ 193 (660)
.++.+++..|.++. +.......+...|++++|+..|+++++..+..+
T Consensus 192 ~~~~r~~~~~~~~~~~r~~~ad~Al~~~~~ll~~~~~~p~~~~~~~~a~~d~l~~Ll~~g~~~eA~~~~~~ll~~~~~~P 271 (765)
T PRK10049 192 AELVRLSFMPTRSEKERYAIADRALAQYDALEALWHDNPDATADYQRARIDRLGALLARDRYKDVISEYQRLKAEGQIIP 271 (765)
T ss_pred HHHHHhhcccccChhHHHHHHHHHHHHHHHHHhhcccCCccchHHHHHHHHHHHHHHHhhhHHHHHHHHHHhhccCCCCC
Confidence 22222222111110 111101122344555555555555555432111
Q ss_pred CchhchHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCc----HHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCC--
Q 006120 194 NQWAYLLPQIYVNLGIALEGEGMVLSACEYYRESAILCPTH----FRALKLLGSALFGVGEYRAAVKALEEAIFIKPD-- 267 (660)
Q Consensus 194 ~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~----~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~-- 267 (660)
..+...+|.++..+|++++|+..|+++++.+|.+ ......++.++...|++++|+..++++....|.
T Consensus 272 -------~~a~~~la~~yl~~g~~e~A~~~l~~~l~~~p~~~~~~~~~~~~L~~a~~~~g~~~eA~~~l~~~~~~~P~~~ 344 (765)
T PRK10049 272 -------PWAQRWVASAYLKLHQPEKAQSILTELFYHPETIADLSDEELADLFYSLLESENYPGALTVTAHTINNSPPFL 344 (765)
T ss_pred -------HHHHHHHHHHHHhcCCcHHHHHHHHHHhhcCCCCCCCChHHHHHHHHHHHhcccHHHHHHHHHHHhhcCCceE
Confidence 1122335778888888888888888888877765 356677777888889999999999988888762
Q ss_pred -------------CHHHHHHHHHHHHhCCChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHcc
Q 006120 268 -------------YADAHCDLASALHAMGEDERAIEVFQKAIDLKPGHVDALYNLGGLYMDLGAGETEEAKKALKEALKM 334 (660)
Q Consensus 268 -------------~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~La~~~~~~~~g~~~eA~~~~~~al~l 334 (660)
...++..+|.++...|++++|+..+++++...|+++.++..+|.++... |++++|+..+++++.+
T Consensus 345 ~~~~~~~~~p~~~~~~a~~~~a~~l~~~g~~~eA~~~l~~al~~~P~n~~l~~~lA~l~~~~--g~~~~A~~~l~~al~l 422 (765)
T PRK10049 345 RLYGSPTSIPNDDWLQGQSLLSQVAKYSNDLPQAEMRARELAYNAPGNQGLRIDYASVLQAR--GWPRAAENELKKAEVL 422 (765)
T ss_pred eecCCCCCCCCchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhc--CCHHHHHHHHHHHHhh
Confidence 1356778999999999999999999999999999999999999999988 9999999999999999
Q ss_pred cCCh
Q 006120 335 TNRV 338 (660)
Q Consensus 335 ~p~~ 338 (660)
+|+.
T Consensus 423 ~Pd~ 426 (765)
T PRK10049 423 EPRN 426 (765)
T ss_pred CCCC
Confidence 9874
No 29
>PF13429 TPR_15: Tetratricopeptide repeat; PDB: 2VQ2_A 2PL2_B.
Probab=99.79 E-value=7.1e-19 Score=179.65 Aligned_cols=266 Identities=21% Similarity=0.221 Sum_probs=122.8
Q ss_pred cCchHHHHhccCchhhHHHHHHHHHHHHhhccCCcCCchHHhhhHHHHHHhCCchHHHHhHHHHHHHHHHHHHHHHHHHH
Q 006120 31 PNHGIVFDDTWKIVDDLEILVKRLKAKQAKDGKLKGDNSDAFSDAGWSRELGTSAEISEKRVFWEESTHDYAVFVKELGV 110 (660)
Q Consensus 31 ~~lg~~y~~~~~~~~al~~~~~~~~~a~~~~~~l~~~~~~a~~~~~~~~~l~~~~~~~~~~~~l~~~~~~~g~~~~Al~~ 110 (660)
..++.++...+++.+|++.+.+.+.. . ..+.....+..++.+....++++.|+..
T Consensus 12 l~~A~~~~~~~~~~~Al~~L~~~~~~-------~------------------~~~~~~~~~~~~a~La~~~~~~~~A~~a 66 (280)
T PF13429_consen 12 LRLARLLYQRGDYEKALEVLKKAAQK-------I------------------APPDDPEYWRLLADLAWSLGDYDEAIEA 66 (280)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred cccccccccccccccccccccccccc-------c------------------cccccccccccccccccccccccccccc
Confidence 36688999999999999988766652 1 0112224445567788889999999999
Q ss_pred HHHHHhhccCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhc
Q 006120 111 LRNRADGARSREEAFDGHMAIGRVLYEHQLFKEALVSFKRACELQPTDVRPHFRAGNCLYVLGRYREAKEEYLLALEAAE 190 (660)
Q Consensus 111 l~~a~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p 190 (660)
+++.+...+..+ ..+..++.. ...+++++|+.++.++.+..+ ++..+.....++...++++++...++++....+
T Consensus 67 y~~l~~~~~~~~---~~~~~l~~l-~~~~~~~~A~~~~~~~~~~~~-~~~~l~~~l~~~~~~~~~~~~~~~l~~~~~~~~ 141 (280)
T PF13429_consen 67 YEKLLASDKANP---QDYERLIQL-LQDGDPEEALKLAEKAYERDG-DPRYLLSALQLYYRLGDYDEAEELLEKLEELPA 141 (280)
T ss_dssp --------------------------------------------------------H-HHHTT-HHHHHHHHHHHHH-T-
T ss_pred cccccccccccc---ccccccccc-ccccccccccccccccccccc-ccchhhHHHHHHHHHhHHHHHHHHHHHHHhccC
Confidence 999987665544 445566666 789999999999999887764 567777888889999999999999999886442
Q ss_pred cCCCchhchHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHH
Q 006120 191 TGGNQWAYLLPQIYVNLGIALEGEGMVLSACEYYRESAILCPTHFRALKLLGSALFGVGEYRAAVKALEEAIFIKPDYAD 270 (660)
Q Consensus 191 ~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~ 270 (660)
.. . .+.++..+|.++.+.|++++|+..++++++.+|++..+...++.++...|+++++...+.......|+++.
T Consensus 142 ~~-~-----~~~~~~~~a~~~~~~G~~~~A~~~~~~al~~~P~~~~~~~~l~~~li~~~~~~~~~~~l~~~~~~~~~~~~ 215 (280)
T PF13429_consen 142 AP-D-----SARFWLALAEIYEQLGDPDKALRDYRKALELDPDDPDARNALAWLLIDMGDYDEAREALKRLLKAAPDDPD 215 (280)
T ss_dssp ---T------HHHHHHHHHHHHHCCHHHHHHHHHHHHHHH-TT-HHHHHHHHHHHCTTCHHHHHHHHHHHHHHH-HTSCC
T ss_pred CC-C-----CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHCCChHHHHHHHHHHHHHCcCHHH
Confidence 11 1 67889999999999999999999999999999999999999999999999999999999998888888889
Q ss_pred HHHHHHHHHHhCCChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHcc
Q 006120 271 AHCDLASALHAMGEDERAIEVFQKAIDLKPGHVDALYNLGGLYMDLGAGETEEAKKALKEALKM 334 (660)
Q Consensus 271 ~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~La~~~~~~~~g~~~eA~~~~~~al~l 334 (660)
.|..+|.++..+|++++|+.+++++++.+|+++..+..+|.++... |+.++|...+++++..
T Consensus 216 ~~~~la~~~~~lg~~~~Al~~~~~~~~~~p~d~~~~~~~a~~l~~~--g~~~~A~~~~~~~~~~ 277 (280)
T PF13429_consen 216 LWDALAAAYLQLGRYEEALEYLEKALKLNPDDPLWLLAYADALEQA--GRKDEALRLRRQALRL 277 (280)
T ss_dssp HCHHHHHHHHHHT-HHHHHHHHHHHHHHSTT-HHHHHHHHHHHT--------------------
T ss_pred HHHHHHHHhccccccccccccccccccccccccccccccccccccc--cccccccccccccccc
Confidence 9999999999999999999999999999999999999999999998 9999999999998764
No 30
>KOG1129 consensus TPR repeat-containing protein [General function prediction only]
Probab=99.78 E-value=7.7e-18 Score=162.36 Aligned_cols=231 Identities=15% Similarity=0.114 Sum_probs=216.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhccCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHc
Q 006120 93 FWEESTHDYAVFVKELGVLRNRADGARSREEAFDGHMAIGRVLYEHQLFKEALVSFKRACELQPTDVRPHFRAGNCLYVL 172 (660)
Q Consensus 93 ~l~~~~~~~g~~~~Al~~l~~a~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~ 172 (660)
.++.++..+|.+.+|.+.++..++..+.. +.+..++.+|.+..+...|+..|.+.++..|.+...+..+++++..+
T Consensus 228 Q~gkCylrLgm~r~AekqlqssL~q~~~~----dTfllLskvY~ridQP~~AL~~~~~gld~fP~~VT~l~g~ARi~eam 303 (478)
T KOG1129|consen 228 QMGKCYLRLGMPRRAEKQLQSSLTQFPHP----DTFLLLSKVYQRIDQPERALLVIGEGLDSFPFDVTYLLGQARIHEAM 303 (478)
T ss_pred HHHHHHHHhcChhhhHHHHHHHhhcCCch----hHHHHHHHHHHHhccHHHHHHHHhhhhhcCCchhhhhhhhHHHHHHH
Confidence 44789999999999999999999887765 77889999999999999999999999999999999999999999999
Q ss_pred CCHHHHHHHHHHHHHHhccCCCchhchHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHCCCHH
Q 006120 173 GRYREAKEEYLLALEAAETGGNQWAYLLPQIYVNLGIALEGEGMVLSACEYYRESAILCPTHFRALKLLGSALFGVGEYR 252 (660)
Q Consensus 173 g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~ 252 (660)
+++++|.++|+.+++..|. +.++.-.+|.-|.-.++.+-|+.+|++.+++...+++.+.++|.+++..++++
T Consensus 304 ~~~~~a~~lYk~vlk~~~~--------nvEaiAcia~~yfY~~~PE~AlryYRRiLqmG~~speLf~NigLCC~yaqQ~D 375 (478)
T KOG1129|consen 304 EQQEDALQLYKLVLKLHPI--------NVEAIACIAVGYFYDNNPEMALRYYRRILQMGAQSPELFCNIGLCCLYAQQID 375 (478)
T ss_pred HhHHHHHHHHHHHHhcCCc--------cceeeeeeeeccccCCChHHHHHHHHHHHHhcCCChHHHhhHHHHHHhhcchh
Confidence 9999999999999999998 66777778888899999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHhCCC---CHHHHHHHHHHHHhCCChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCCCHHHHHHHHH
Q 006120 253 AAVKALEEAIFIKPD---YADAHCDLASALHAMGEDERAIEVFQKAIDLKPGHVDALYNLGGLYMDLGAGETEEAKKALK 329 (660)
Q Consensus 253 ~A~~~~~~al~~~p~---~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~La~~~~~~~~g~~~eA~~~~~ 329 (660)
-++..|++|+....+ -.++|+|+|.+....|++.-|..+|+-++..++++.+++.+||.+-... |+.++|..++.
T Consensus 376 ~~L~sf~RAlstat~~~~aaDvWYNlg~vaV~iGD~nlA~rcfrlaL~~d~~h~ealnNLavL~~r~--G~i~~Arsll~ 453 (478)
T KOG1129|consen 376 LVLPSFQRALSTATQPGQAADVWYNLGFVAVTIGDFNLAKRCFRLALTSDAQHGEALNNLAVLAARS--GDILGARSLLN 453 (478)
T ss_pred hhHHHHHHHHhhccCcchhhhhhhccceeEEeccchHHHHHHHHHHhccCcchHHHHHhHHHHHhhc--CchHHHHHHHH
Confidence 999999999988542 3789999999999999999999999999999999999999999999988 99999999999
Q ss_pred HHHcccCC
Q 006120 330 EALKMTNR 337 (660)
Q Consensus 330 ~al~l~p~ 337 (660)
.|-.+.|.
T Consensus 454 ~A~s~~P~ 461 (478)
T KOG1129|consen 454 AAKSVMPD 461 (478)
T ss_pred HhhhhCcc
Confidence 99998876
No 31
>COG2956 Predicted N-acetylglucosaminyl transferase [Carbohydrate transport and metabolism]
Probab=99.78 E-value=3.7e-16 Score=151.08 Aligned_cols=301 Identities=15% Similarity=0.156 Sum_probs=257.3
Q ss_pred ccccccchhHhhHhhhcCCcchhhccCchHHHHhccCchhhHHHHHHHHHHHHhhccCCcCCchHHhhhHHHHHHhCCch
Q 006120 6 SSSSIVDERAIESQKKQRTAAWAVSPNHGIVFDDTWKIVDDLEILVKRLKAKQAKDGKLKGDNSDAFSDAGWSRELGTSA 85 (660)
Q Consensus 6 ~~~s~~~~~~~~~~~~~~p~~~~~~~~lg~~y~~~~~~~~al~~~~~~~~~a~~~~~~l~~~~~~a~~~~~~~~~l~~~~ 85 (660)
..+|+|..+..+..+....+..+.-|.-|+-+.-..+.++|++.+...++ .++
T Consensus 14 a~GWymgrrsaqq~~~~qa~~lsr~Yv~GlNfLLs~Q~dKAvdlF~e~l~---------------------------~d~ 66 (389)
T COG2956 14 AYGWYMGRRSAQQDKQDQANRLSRDYVKGLNFLLSNQPDKAVDLFLEMLQ---------------------------EDP 66 (389)
T ss_pred HHHHHHhhhHHHhhHHHHHhhccHHHHhHHHHHhhcCcchHHHHHHHHHh---------------------------cCc
Confidence 34577777655554444445455556678888888888999998888877 356
Q ss_pred HHHHhHHHHHHHHHHHHHHHHHHHHHHHHHhhcc-CcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHH
Q 006120 86 EISEKRVFWEESTHDYAVFVKELGVLRNRADGAR-SREEAFDGHMAIGRVLYEHQLFKEALVSFKRACELQPTDVRPHFR 164 (660)
Q Consensus 86 ~~~~~~~~l~~~~~~~g~~~~Al~~l~~a~~~~~-~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~ 164 (660)
+..++...+|.++...|..+.||..-+..++... ...+...++..+|.-|+..|-++.|...|....+...-...+...
T Consensus 67 ~t~e~~ltLGnLfRsRGEvDRAIRiHQ~L~~spdlT~~qr~lAl~qL~~Dym~aGl~DRAE~~f~~L~de~efa~~Alqq 146 (389)
T COG2956 67 ETFEAHLTLGNLFRSRGEVDRAIRIHQTLLESPDLTFEQRLLALQQLGRDYMAAGLLDRAEDIFNQLVDEGEFAEGALQQ 146 (389)
T ss_pred hhhHHHHHHHHHHHhcchHHHHHHHHHHHhcCCCCchHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHhcchhhhHHHHHH
Confidence 6777888899999999999999999887776544 445566889999999999999999999999998876666789999
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHHHhccCCCchhchHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCcHHHHHHHHHH
Q 006120 165 AGNCLYVLGRYREAKEEYLLALEAAETGGNQWAYLLPQIYVNLGIALEGEGMVLSACEYYRESAILCPTHFRALKLLGSA 244 (660)
Q Consensus 165 la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~ 244 (660)
+..+|....+|++|++..++..++.+...... .+..|..++..+....+.+.|...+.+|++.+|+...+-..+|.+
T Consensus 147 Ll~IYQ~treW~KAId~A~~L~k~~~q~~~~e---IAqfyCELAq~~~~~~~~d~A~~~l~kAlqa~~~cvRAsi~lG~v 223 (389)
T COG2956 147 LLNIYQATREWEKAIDVAERLVKLGGQTYRVE---IAQFYCELAQQALASSDVDRARELLKKALQADKKCVRASIILGRV 223 (389)
T ss_pred HHHHHHHhhHHHHHHHHHHHHHHcCCccchhH---HHHHHHHHHHHHhhhhhHHHHHHHHHHHHhhCccceehhhhhhHH
Confidence 99999999999999999999999988765443 789999999999999999999999999999999999999999999
Q ss_pred HHHCCCHHHHHHHHHHHHHhCCCC-HHHHHHHHHHHHhCCChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCCCHHH
Q 006120 245 LFGVGEYRAAVKALEEAIFIKPDY-ADAHCDLASALHAMGEDERAIEVFQKAIDLKPGHVDALYNLGGLYMDLGAGETEE 323 (660)
Q Consensus 245 ~~~~g~~~~A~~~~~~al~~~p~~-~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~La~~~~~~~~g~~~e 323 (660)
....|+|+.|++.++.+++.+|+. +.+...|..+|..+|+.++.+..+.++.+..+. +++...++..-... .-.+.
T Consensus 224 ~~~~g~y~~AV~~~e~v~eQn~~yl~evl~~L~~~Y~~lg~~~~~~~fL~~~~~~~~g-~~~~l~l~~lie~~--~G~~~ 300 (389)
T COG2956 224 ELAKGDYQKAVEALERVLEQNPEYLSEVLEMLYECYAQLGKPAEGLNFLRRAMETNTG-ADAELMLADLIELQ--EGIDA 300 (389)
T ss_pred HHhccchHHHHHHHHHHHHhChHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHccCC-ccHHHHHHHHHHHh--hChHH
Confidence 999999999999999999999987 678888999999999999999999999998876 55666677776666 67889
Q ss_pred HHHHHHHHHcccCChh
Q 006120 324 AKKALKEALKMTNRVE 339 (660)
Q Consensus 324 A~~~~~~al~l~p~~~ 339 (660)
|..++.+-+.-.|+..
T Consensus 301 Aq~~l~~Ql~r~Pt~~ 316 (389)
T COG2956 301 AQAYLTRQLRRKPTMR 316 (389)
T ss_pred HHHHHHHHHhhCCcHH
Confidence 9999999999988743
No 32
>KOG0624 consensus dsRNA-activated protein kinase inhibitor P58, contains TPR and DnaJ domains [Defense mechanisms]
Probab=99.78 E-value=2.1e-16 Score=153.50 Aligned_cols=317 Identities=14% Similarity=0.106 Sum_probs=264.6
Q ss_pred hhhcCCcchhhccCchHHHHhccCchhhHHHHHHHHHHHHhhccCCcCCchHHhhhHHHH---------------HHhCC
Q 006120 19 QKKQRTAAWAVSPNHGIVFDDTWKIVDDLEILVKRLKAKQAKDGKLKGDNSDAFSDAGWS---------------RELGT 83 (660)
Q Consensus 19 ~~~~~p~~~~~~~~lg~~y~~~~~~~~al~~~~~~~~~a~~~~~~l~~~~~~a~~~~~~~---------------~~l~~ 83 (660)
-.--+|...+.+..+|..+...+++.+|+..+-.+++ .+|+++.++-..... +.+..
T Consensus 30 ~~~~~~advekhlElGk~lla~~Q~sDALt~yHaAve--------~dp~~Y~aifrRaT~yLAmGksk~al~Dl~rVlel 101 (504)
T KOG0624|consen 30 ESTASPADVEKHLELGKELLARGQLSDALTHYHAAVE--------GDPNNYQAIFRRATVYLAMGKSKAALQDLSRVLEL 101 (504)
T ss_pred HhcCCHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHc--------CCchhHHHHHHHHHHHhhhcCCccchhhHHHHHhc
Confidence 3344677888889999999999999999999999998 688877776433222 33455
Q ss_pred chHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHhhccCcHHHHHHH------------HHHHHHHHHcCCHHHHHHHHHHH
Q 006120 84 SAEISEKRVFWEESTHDYAVFVKELGVLRNRADGARSREEAFDGH------------MAIGRVLYEHQLFKEALVSFKRA 151 (660)
Q Consensus 84 ~~~~~~~~~~l~~~~~~~g~~~~Al~~l~~a~~~~~~~~~~~~~~------------~~lg~~~~~~g~~~~A~~~~~~a 151 (660)
.|+...+++..|.++..+|.+++|...++..++..++.....++. ......++..|+...|+++....
T Consensus 102 KpDF~~ARiQRg~vllK~Gele~A~~DF~~vl~~~~s~~~~~eaqskl~~~~e~~~l~~ql~s~~~~GD~~~ai~~i~~l 181 (504)
T KOG0624|consen 102 KPDFMAARIQRGVVLLKQGELEQAEADFDQVLQHEPSNGLVLEAQSKLALIQEHWVLVQQLKSASGSGDCQNAIEMITHL 181 (504)
T ss_pred CccHHHHHHHhchhhhhcccHHHHHHHHHHHHhcCCCcchhHHHHHHHHhHHHHHHHHHHHHHHhcCCchhhHHHHHHHH
Confidence 667777888999999999999999999999999887554433332 33445566789999999999999
Q ss_pred HHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhccCCCchhchHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC
Q 006120 152 CELQPTDVRPHFRAGNCLYVLGRYREAKEEYLLALEAAETGGNQWAYLLPQIYVNLGIALEGEGMVLSACEYYRESAILC 231 (660)
Q Consensus 152 l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~ 231 (660)
+++.|-++..+...+.||...|++..|+..++.+-++..+ +.+.++.++.+++..|+.+.++...+++++++
T Consensus 182 lEi~~Wda~l~~~Rakc~i~~~e~k~AI~Dlk~askLs~D--------nTe~~ykis~L~Y~vgd~~~sL~~iRECLKld 253 (504)
T KOG0624|consen 182 LEIQPWDASLRQARAKCYIAEGEPKKAIHDLKQASKLSQD--------NTEGHYKISQLLYTVGDAENSLKEIRECLKLD 253 (504)
T ss_pred HhcCcchhHHHHHHHHHHHhcCcHHHHHHHHHHHHhcccc--------chHHHHHHHHHHHhhhhHHHHHHHHHHHHccC
Confidence 9999999999999999999999999999999999999887 78999999999999999999999999999999
Q ss_pred CCcHHHHH---H---------HHHHHHHCCCHHHHHHHHHHHHHhCCCCHHH----HHHHHHHHHhCCChHHHHHHHHHH
Q 006120 232 PTHFRALK---L---------LGSALFGVGEYRAAVKALEEAIFIKPDYADA----HCDLASALHAMGEDERAIEVFQKA 295 (660)
Q Consensus 232 p~~~~~~~---~---------lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~----~~~la~~~~~~g~~~~A~~~~~~a 295 (660)
|++...+- . -+.-....++|.++++..++.++.+|..+.+ ...+..|+..-+++.+|+..+.++
T Consensus 254 pdHK~Cf~~YKklkKv~K~les~e~~ie~~~~t~cle~ge~vlk~ep~~~~ir~~~~r~~c~C~~~d~~~~eAiqqC~ev 333 (504)
T KOG0624|consen 254 PDHKLCFPFYKKLKKVVKSLESAEQAIEEKHWTECLEAGEKVLKNEPEETMIRYNGFRVLCTCYREDEQFGEAIQQCKEV 333 (504)
T ss_pred cchhhHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhcCCcccceeeeeeheeeecccccCCHHHHHHHHHHH
Confidence 99855332 1 1444567899999999999999999985444 445778899999999999999999
Q ss_pred HHhCCCCHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHcccCCh-hHHHHHHHHHHHHHH
Q 006120 296 IDLKPGHVDALYNLGGLYMDLGAGETEEAKKALKEALKMTNRV-ELHDAVSHLKQLQKK 353 (660)
Q Consensus 296 l~~~p~~~~a~~~La~~~~~~~~g~~~eA~~~~~~al~l~p~~-~~~~~~~~l~~l~~~ 353 (660)
+..+|++++++...+.+|.-- ..|+.|+..|++|++.+++. .....+....++.+.
T Consensus 334 L~~d~~dv~~l~dRAeA~l~d--E~YD~AI~dye~A~e~n~sn~~~reGle~Akrlkkq 390 (504)
T KOG0624|consen 334 LDIDPDDVQVLCDRAEAYLGD--EMYDDAIHDYEKALELNESNTRAREGLERAKRLKKQ 390 (504)
T ss_pred HhcCchHHHHHHHHHHHHhhh--HHHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHHHH
Confidence 999999999999999999977 89999999999999999864 345555555555443
No 33
>PRK12370 invasion protein regulator; Provisional
Probab=99.77 E-value=7.6e-17 Score=179.79 Aligned_cols=200 Identities=18% Similarity=0.157 Sum_probs=181.3
Q ss_pred HHHHHHHHHHc---CCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHc---------CCHHHHHHHHHHHHHHhccCCCc
Q 006120 128 HMAIGRVLYEH---QLFKEALVSFKRACELQPTDVRPHFRAGNCLYVL---------GRYREAKEEYLLALEAAETGGNQ 195 (660)
Q Consensus 128 ~~~lg~~~~~~---g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~---------g~~~~A~~~~~~al~~~p~~~~~ 195 (660)
++..|..+... +++++|+.+|+++++++|+++.++..+|.++... +++++|...++++++++|+
T Consensus 261 ~~lrg~~~~~~~~~~~~~~A~~~~~~Al~ldP~~a~a~~~La~~~~~~~~~g~~~~~~~~~~A~~~~~~Al~ldP~---- 336 (553)
T PRK12370 261 VYLRGKHELNQYTPYSLQQALKLLTQCVNMSPNSIAPYCALAECYLSMAQMGIFDKQNAMIKAKEHAIKATELDHN---- 336 (553)
T ss_pred HHHHhHHHHHccCHHHHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHHHHcCCcccchHHHHHHHHHHHHHhcCCC----
Confidence 45556555443 4578999999999999999999999999987644 3489999999999999999
Q ss_pred hhchHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHH
Q 006120 196 WAYLLPQIYVNLGIALEGEGMVLSACEYYRESAILCPTHFRALKLLGSALFGVGEYRAAVKALEEAIFIKPDYADAHCDL 275 (660)
Q Consensus 196 ~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l 275 (660)
.+.++..+|.++...|++++|+..|+++++++|+++.+++.+|.++...|++++|+..++++++++|.++..+..+
T Consensus 337 ----~~~a~~~lg~~~~~~g~~~~A~~~~~~Al~l~P~~~~a~~~lg~~l~~~G~~~eAi~~~~~Al~l~P~~~~~~~~~ 412 (553)
T PRK12370 337 ----NPQALGLLGLINTIHSEYIVGSLLFKQANLLSPISADIKYYYGWNLFMAGQLEEALQTINECLKLDPTRAAAGITK 412 (553)
T ss_pred ----CHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCChhhHHHH
Confidence 7899999999999999999999999999999999999999999999999999999999999999999998887777
Q ss_pred HHHHHhCCChHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHcccCC
Q 006120 276 ASALHAMGEDERAIEVFQKAIDLK-PGHVDALYNLGGLYMDLGAGETEEAKKALKEALKMTNR 337 (660)
Q Consensus 276 a~~~~~~g~~~~A~~~~~~al~~~-p~~~~a~~~La~~~~~~~~g~~~eA~~~~~~al~l~p~ 337 (660)
+.++...|++++|+..+++++... |+++.++..+|.++..+ |++++|...+++.....|.
T Consensus 413 ~~~~~~~g~~eeA~~~~~~~l~~~~p~~~~~~~~la~~l~~~--G~~~eA~~~~~~~~~~~~~ 473 (553)
T PRK12370 413 LWITYYHTGIDDAIRLGDELRSQHLQDNPILLSMQVMFLSLK--GKHELARKLTKEISTQEIT 473 (553)
T ss_pred HHHHHhccCHHHHHHHHHHHHHhccccCHHHHHHHHHHHHhC--CCHHHHHHHHHHhhhccch
Confidence 878888999999999999999875 78899999999999998 9999999999998877765
No 34
>KOG0548 consensus Molecular co-chaperone STI1 [Posttranslational modification, protein turnover, chaperones]
Probab=99.77 E-value=8.2e-16 Score=158.40 Aligned_cols=272 Identities=22% Similarity=0.287 Sum_probs=217.5
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhccCCCchhchHHHHHH
Q 006120 126 DGHMAIGRVLYEHQLFKEALVSFKRACELQPTDVRPHFRAGNCLYVLGRYREAKEEYLLALEAAETGGNQWAYLLPQIYV 205 (660)
Q Consensus 126 ~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~ 205 (660)
...-.+|...+...++..|++.|..+++++ .+...+.+.+.+|+..|.+.+.+....++++.......... +.+....
T Consensus 225 ~~ek~lgnaaykkk~f~~a~q~y~~a~el~-~~it~~~n~aA~~~e~~~~~~c~~~c~~a~E~gre~rad~k-lIak~~~ 302 (539)
T KOG0548|consen 225 HKEKELGNAAYKKKDFETAIQHYAKALELA-TDITYLNNIAAVYLERGKYAECIELCEKAVEVGRELRADYK-LIAKALA 302 (539)
T ss_pred hHHHHHHHHHHHhhhHHHHHHHHHHHHhHh-hhhHHHHHHHHHHHhccHHHHhhcchHHHHHHhHHHHHHHH-HHHHHHH
Confidence 445678999999999999999999999999 88899999999999999999999999998877654222111 1455666
Q ss_pred HHHHHHHHCCCHHHHHHHHHHHHHhC--------------------------CCcHHHHHHHHHHHHHCCCHHHHHHHHH
Q 006120 206 NLGIALEGEGMVLSACEYYRESAILC--------------------------PTHFRALKLLGSALFGVGEYRAAVKALE 259 (660)
Q Consensus 206 ~la~~~~~~g~~~~A~~~~~~al~~~--------------------------p~~~~~~~~lg~~~~~~g~~~~A~~~~~ 259 (660)
.+|..+...++++.|+.+|++++... |.-+.--..-|..++..|+|..|+..|.
T Consensus 303 r~g~a~~k~~~~~~ai~~~~kaLte~Rt~~~ls~lk~~Ek~~k~~e~~a~~~pe~A~e~r~kGne~Fk~gdy~~Av~~Yt 382 (539)
T KOG0548|consen 303 RLGNAYTKREDYEGAIKYYQKALTEHRTPDLLSKLKEAEKALKEAERKAYINPEKAEEEREKGNEAFKKGDYPEAVKHYT 382 (539)
T ss_pred HhhhhhhhHHhHHHHHHHHHHHhhhhcCHHHHHHHHHHHHHHHHHHHHHhhChhHHHHHHHHHHHHHhccCHHHHHHHHH
Confidence 68889999999999999999997643 2223334456999999999999999999
Q ss_pred HHHHhCCCCHHHHHHHHHHHHhCCChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHcccCC-h
Q 006120 260 EAIFIKPDYADAHCDLASALHAMGEDERAIEVFQKAIDLKPGHVDALYNLGGLYMDLGAGETEEAKKALKEALKMTNR-V 338 (660)
Q Consensus 260 ~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~La~~~~~~~~g~~~eA~~~~~~al~l~p~-~ 338 (660)
+||..+|+++..|.|.|.||.++|++..|+...+++++++|+...+|...|.++..+ .+|++|.+.|+++++++|+ .
T Consensus 383 eAIkr~P~Da~lYsNRAac~~kL~~~~~aL~Da~~~ieL~p~~~kgy~RKg~al~~m--k~ydkAleay~eale~dp~~~ 460 (539)
T KOG0548|consen 383 EAIKRDPEDARLYSNRAACYLKLGEYPEALKDAKKCIELDPNFIKAYLRKGAALRAM--KEYDKALEAYQEALELDPSNA 460 (539)
T ss_pred HHHhcCCchhHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCchHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHhcCchhH
Confidence 999999999999999999999999999999999999999999999999999999999 9999999999999999986 3
Q ss_pred hHHHHHHHHHHHHHHhccCCCCCCCCCCccccCcchHHhhchhhhhhhhHHHHhcCHHHHHHHHHhccCHHHHHHHhhCC
Q 006120 339 ELHDAVSHLKQLQKKKSKGNRGTNGEGGFDIVEPSKFKTVGERTTVRQDLANALEIRAFQKITRLSRCDVELLKKEMSET 418 (660)
Q Consensus 339 ~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~al~~~~~~~~~~~~~~~~~~~~~~l~~~ 418 (660)
++...+......+... .......+.....++....++.+.++.+....+.++ .+.+++.+|
T Consensus 461 e~~~~~~rc~~a~~~~------------------~~~ee~~~r~~~dpev~~il~d~~m~~~l~q~q~~p-a~~~~~~n~ 521 (539)
T KOG0548|consen 461 EAIDGYRRCVEAQRGD------------------ETPEETKRRAMADPEVQAILQDPAMRQILEQMQENP-ALQEHLKNP 521 (539)
T ss_pred HHHHHHHHHHHHhhcC------------------CCHHHHHHhhccCHHHHHHHcCHHHHHHHHHHHhCH-HHHHHHhcc
Confidence 4444444444433110 011122223556677777888888888888877777 555666655
Q ss_pred Cc
Q 006120 419 DV 420 (660)
Q Consensus 419 ~~ 420 (660)
.+
T Consensus 522 ~v 523 (539)
T KOG0548|consen 522 MV 523 (539)
T ss_pred HH
Confidence 43
No 35
>KOG1125 consensus TPR repeat-containing protein [General function prediction only]
Probab=99.77 E-value=1.6e-17 Score=172.24 Aligned_cols=199 Identities=26% Similarity=0.290 Sum_probs=175.0
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhccCCCchhchHHHHHHHHH
Q 006120 129 MAIGRVLYEHQLFKEALVSFKRACELQPTDVRPHFRAGNCLYVLGRYREAKEEYLLALEAAETGGNQWAYLLPQIYVNLG 208 (660)
Q Consensus 129 ~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~la 208 (660)
+..|..+++.|++.+|.-+|+.+++.+|.++++|..||.+....++-..|+..++++++++|+ ...++..||
T Consensus 289 f~eG~~lm~nG~L~~A~LafEAAVkqdP~haeAW~~LG~~qaENE~E~~ai~AL~rcl~LdP~--------NleaLmaLA 360 (579)
T KOG1125|consen 289 FKEGCNLMKNGDLSEAALAFEAAVKQDPQHAEAWQKLGITQAENENEQNAISALRRCLELDPT--------NLEALMALA 360 (579)
T ss_pred HHHHHHHHhcCCchHHHHHHHHHHhhChHHHHHHHHhhhHhhhccchHHHHHHHHHHHhcCCc--------cHHHHHHHH
Confidence 567888888888888888888888888888888888888888888888888888888888888 777888888
Q ss_pred HHHHHCCCHHHHHHHHHHHHHh-----------------------------------------CC--CcHHHHHHHHHHH
Q 006120 209 IALEGEGMVLSACEYYRESAIL-----------------------------------------CP--THFRALKLLGSAL 245 (660)
Q Consensus 209 ~~~~~~g~~~~A~~~~~~al~~-----------------------------------------~p--~~~~~~~~lg~~~ 245 (660)
..|...|.-.+|+.++.+-+.. .| .++++...||.+|
T Consensus 361 VSytNeg~q~~Al~~L~~Wi~~~p~y~~l~~a~~~~~~~~~~s~~~~~~l~~i~~~fLeaa~~~~~~~DpdvQ~~LGVLy 440 (579)
T KOG1125|consen 361 VSYTNEGLQNQALKMLDKWIRNKPKYVHLVSAGENEDFENTKSFLDSSHLAHIQELFLEAARQLPTKIDPDVQSGLGVLY 440 (579)
T ss_pred HHHhhhhhHHHHHHHHHHHHHhCccchhccccCccccccCCcCCCCHHHHHHHHHHHHHHHHhCCCCCChhHHhhhHHHH
Confidence 8888888777777777776543 33 3467788999999
Q ss_pred HHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhCCChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCCCHHHHH
Q 006120 246 FGVGEYRAAVKALEEAIFIKPDYADAHCDLASALHAMGEDERAIEVFQKAIDLKPGHVDALYNLGGLYMDLGAGETEEAK 325 (660)
Q Consensus 246 ~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~La~~~~~~~~g~~~eA~ 325 (660)
...|+|+.|+.+|+.||...|++...|+.||.++..-.+.++|+..|++|+++.|.+..++++||..+..+ |.|++|.
T Consensus 441 ~ls~efdraiDcf~~AL~v~Pnd~~lWNRLGAtLAN~~~s~EAIsAY~rALqLqP~yVR~RyNlgIS~mNl--G~ykEA~ 518 (579)
T KOG1125|consen 441 NLSGEFDRAVDCFEAALQVKPNDYLLWNRLGATLANGNRSEEAISAYNRALQLQPGYVRVRYNLGISCMNL--GAYKEAV 518 (579)
T ss_pred hcchHHHHHHHHHHHHHhcCCchHHHHHHhhHHhcCCcccHHHHHHHHHHHhcCCCeeeeehhhhhhhhhh--hhHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999 9999999
Q ss_pred HHHHHHHcccCC
Q 006120 326 KALKEALKMTNR 337 (660)
Q Consensus 326 ~~~~~al~l~p~ 337 (660)
++|-.||.+.+.
T Consensus 519 ~hlL~AL~mq~k 530 (579)
T KOG1125|consen 519 KHLLEALSMQRK 530 (579)
T ss_pred HHHHHHHHhhhc
Confidence 999999999754
No 36
>KOG1840 consensus Kinesin light chain [Cytoskeleton]
Probab=99.76 E-value=2.8e-16 Score=167.53 Aligned_cols=252 Identities=17% Similarity=0.123 Sum_probs=215.7
Q ss_pred CCchHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHhhcc-----CcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--
Q 006120 82 GTSAEISEKRVFWEESTHDYAVFVKELGVLRNRADGAR-----SREEAFDGHMAIGRVLYEHQLFKEALVSFKRACEL-- 154 (660)
Q Consensus 82 ~~~~~~~~~~~~l~~~~~~~g~~~~Al~~l~~a~~~~~-----~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~-- 154 (660)
..+|........++..+...|+|++|+..++.++.... ..+........+|..|..++++.+|+..|++++.+
T Consensus 193 ~~~P~~~~~~~~La~~y~~~g~~e~A~~l~k~Al~~l~k~~G~~hl~va~~l~~~a~~y~~~~k~~eAv~ly~~AL~i~e 272 (508)
T KOG1840|consen 193 DEDPERLRTLRNLAEMYAVQGRLEKAEPLCKQALRILEKTSGLKHLVVASMLNILALVYRSLGKYDEAVNLYEEALTIRE 272 (508)
T ss_pred cCCchHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHccCccCHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHH
Confidence 45777788888899999999999999999999998742 34555566667999999999999999999999987
Q ss_pred ------CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhccCCCchhchHHHHHHHHHHHHHHCCCHHHHHHHHHHHH
Q 006120 155 ------QPTDVRPHFRAGNCLYVLGRYREAKEEYLLALEAAETGGNQWAYLLPQIYVNLGIALEGEGMVLSACEYYRESA 228 (660)
Q Consensus 155 ------~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al 228 (660)
+|..+.++.+||.+|...|++++|..++++|+++............+..+.+++.++..++++++|+.++++++
T Consensus 273 ~~~G~~h~~va~~l~nLa~ly~~~GKf~EA~~~~e~Al~I~~~~~~~~~~~v~~~l~~~~~~~~~~~~~Eea~~l~q~al 352 (508)
T KOG1840|consen 273 EVFGEDHPAVAATLNNLAVLYYKQGKFAEAEEYCERALEIYEKLLGASHPEVAAQLSELAAILQSMNEYEEAKKLLQKAL 352 (508)
T ss_pred HhcCCCCHHHHHHHHHHHHHHhccCChHHHHHHHHHHHHHHHHhhccChHHHHHHHHHHHHHHHHhcchhHHHHHHHHHH
Confidence 34456789999999999999999999999999997663333333377889999999999999999999999998
Q ss_pred HhC--------CCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC--------CCCHHHHHHHHHHHHhCCChHHHHHHH
Q 006120 229 ILC--------PTHFRALKLLGSALFGVGEYRAAVKALEEAIFIK--------PDYADAHCDLASALHAMGEDERAIEVF 292 (660)
Q Consensus 229 ~~~--------p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~--------p~~~~~~~~la~~~~~~g~~~~A~~~~ 292 (660)
++. +.-+..+.+||.+|..+|++++|.+++++|+.+. +.....+.++|..|.+.+++.+|...|
T Consensus 353 ~i~~~~~g~~~~~~a~~~~nl~~l~~~~gk~~ea~~~~k~ai~~~~~~~~~~~~~~~~~l~~la~~~~~~k~~~~a~~l~ 432 (508)
T KOG1840|consen 353 KIYLDAPGEDNVNLAKIYANLAELYLKMGKYKEAEELYKKAIQILRELLGKKDYGVGKPLNQLAEAYEELKKYEEAEQLF 432 (508)
T ss_pred HHHHhhccccchHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHhcccCcChhhhHHHHHHHHHHHHhcccchHHHHH
Confidence 862 2336789999999999999999999999999985 233667889999999999999999999
Q ss_pred HHHHHh-------CCCCHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHccc
Q 006120 293 QKAIDL-------KPGHVDALYNLGGLYMDLGAGETEEAKKALKEALKMT 335 (660)
Q Consensus 293 ~~al~~-------~p~~~~a~~~La~~~~~~~~g~~~eA~~~~~~al~l~ 335 (660)
.+++.+ .|+....+.+|+.+|..+ |++++|.++.++++...
T Consensus 433 ~~~~~i~~~~g~~~~~~~~~~~nL~~~Y~~~--g~~e~a~~~~~~~~~~~ 480 (508)
T KOG1840|consen 433 EEAKDIMKLCGPDHPDVTYTYLNLAALYRAQ--GNYEAAEELEEKVLNAR 480 (508)
T ss_pred HHHHHHHHHhCCCCCchHHHHHHHHHHHHHc--ccHHHHHHHHHHHHHHH
Confidence 999876 345567899999999999 99999999999998653
No 37
>PF13429 TPR_15: Tetratricopeptide repeat; PDB: 2VQ2_A 2PL2_B.
Probab=99.75 E-value=2.4e-18 Score=175.79 Aligned_cols=243 Identities=20% Similarity=0.160 Sum_probs=116.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhccCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH
Q 006120 92 VFWEESTHDYAVFVKELGVLRNRADGARSREEAFDGHMAIGRVLYEHQLFKEALVSFKRACELQPTDVRPHFRAGNCLYV 171 (660)
Q Consensus 92 ~~l~~~~~~~g~~~~Al~~l~~a~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~ 171 (660)
+.++.++...|++++|++.+.+.+.... ++.....|..+|.+....+++++|+..|++++..++.++..+..++.+ ..
T Consensus 12 l~~A~~~~~~~~~~~Al~~L~~~~~~~~-~~~~~~~~~~~a~La~~~~~~~~A~~ay~~l~~~~~~~~~~~~~l~~l-~~ 89 (280)
T PF13429_consen 12 LRLARLLYQRGDYEKALEVLKKAAQKIA-PPDDPEYWRLLADLAWSLGDYDEAIEAYEKLLASDKANPQDYERLIQL-LQ 89 (280)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred cccccccccccccccccccccccccccc-cccccccccccccccccccccccccccccccccccccccccccccccc-cc
Confidence 3558888999999999999977665441 122237788899999999999999999999999999988888888888 79
Q ss_pred cCCHHHHHHHHHHHHHHhccCCCchhchHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC--CCcHHHHHHHHHHHHHCC
Q 006120 172 LGRYREAKEEYLLALEAAETGGNQWAYLLPQIYVNLGIALEGEGMVLSACEYYRESAILC--PTHFRALKLLGSALFGVG 249 (660)
Q Consensus 172 ~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~--p~~~~~~~~lg~~~~~~g 249 (660)
.+++++|..+++++.+..+ .+..+.....++...++++++...++++.... +.++..|..+|.++.+.|
T Consensus 90 ~~~~~~A~~~~~~~~~~~~---------~~~~l~~~l~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~a~~~~~~G 160 (280)
T PF13429_consen 90 DGDPEEALKLAEKAYERDG---------DPRYLLSALQLYYRLGDYDEAEELLEKLEELPAAPDSARFWLALAEIYEQLG 160 (280)
T ss_dssp -------------------------------------H-HHHTT-HHHHHHHHHHHHH-T---T-HHHHHHHHHHHHHCC
T ss_pred ccccccccccccccccccc---------ccchhhHHHHHHHHHhHHHHHHHHHHHHHhccCCCCCHHHHHHHHHHHHHcC
Confidence 9999999999999987664 34556667778899999999999999987655 678899999999999999
Q ss_pred CHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhCCChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCCCHHHHHHHHH
Q 006120 250 EYRAAVKALEEAIFIKPDYADAHCDLASALHAMGEDERAIEVFQKAIDLKPGHVDALYNLGGLYMDLGAGETEEAKKALK 329 (660)
Q Consensus 250 ~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~La~~~~~~~~g~~~eA~~~~~ 329 (660)
++++|+..|+++++++|++..++..++.++...|+.+++...++......|+++..+..+|.++..+ |++++|+.+|+
T Consensus 161 ~~~~A~~~~~~al~~~P~~~~~~~~l~~~li~~~~~~~~~~~l~~~~~~~~~~~~~~~~la~~~~~l--g~~~~Al~~~~ 238 (280)
T PF13429_consen 161 DPDKALRDYRKALELDPDDPDARNALAWLLIDMGDYDEAREALKRLLKAAPDDPDLWDALAAAYLQL--GRYEEALEYLE 238 (280)
T ss_dssp HHHHHHHHHHHHHHH-TT-HHHHHHHHHHHCTTCHHHHHHHHHHHHHHH-HTSCCHCHHHHHHHHHH--T-HHHHHHHHH
T ss_pred CHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHCCChHHHHHHHHHHHHHCcCHHHHHHHHHHHhccc--ccccccccccc
Confidence 9999999999999999999999999999999999999999999999888888899999999999999 99999999999
Q ss_pred HHHcccCC-hhHHHHHHHH
Q 006120 330 EALKMTNR-VELHDAVSHL 347 (660)
Q Consensus 330 ~al~l~p~-~~~~~~~~~l 347 (660)
+++...|+ +.....++.+
T Consensus 239 ~~~~~~p~d~~~~~~~a~~ 257 (280)
T PF13429_consen 239 KALKLNPDDPLWLLAYADA 257 (280)
T ss_dssp HHHHHSTT-HHHHHHHHHH
T ss_pred ccccccccccccccccccc
Confidence 99999985 4444444433
No 38
>TIGR02521 type_IV_pilW type IV pilus biogenesis/stability protein PilW. Members of this family are designated PilF in ref (PubMed:8973346) and PilW in ref (PubMed:15612916). This outer membrane protein is required both for pilus stability and for pilus function such as adherence to human cells. Members of this family contain copies of the TPR (tetratricopeptide repeat) domain.
Probab=99.75 E-value=6.2e-16 Score=152.31 Aligned_cols=206 Identities=18% Similarity=0.133 Sum_probs=186.5
Q ss_pred HHHHhHHHHHHHHHHHHHHHHHHHHHHHHHhhccCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHH
Q 006120 86 EISEKRVFWEESTHDYAVFVKELGVLRNRADGARSREEAFDGHMAIGRVLYEHQLFKEALVSFKRACELQPTDVRPHFRA 165 (660)
Q Consensus 86 ~~~~~~~~l~~~~~~~g~~~~Al~~l~~a~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l 165 (660)
.....+..++..+...|++++|+..++++++..+.. ..++..+|.++...|++++|+..++++++..|.+..++..+
T Consensus 29 ~~~~~~~~la~~~~~~~~~~~A~~~~~~~l~~~p~~---~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~ 105 (234)
T TIGR02521 29 KAAKIRVQLALGYLEQGDLEVAKENLDKALEHDPDD---YLAYLALALYYQQLGELEKAEDSFRRALTLNPNNGDVLNNY 105 (234)
T ss_pred cHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCccc---HHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHH
Confidence 345667778889999999999999999999876655 47889999999999999999999999999999999999999
Q ss_pred HHHHHHcCCHHHHHHHHHHHHHHhccCCCchhchHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHH
Q 006120 166 GNCLYVLGRYREAKEEYLLALEAAETGGNQWAYLLPQIYVNLGIALEGEGMVLSACEYYRESAILCPTHFRALKLLGSAL 245 (660)
Q Consensus 166 a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~ 245 (660)
|.++...|++++|+..+++++...+... ....+..+|.++...|++++|...+++++...|++..++..+|.++
T Consensus 106 ~~~~~~~g~~~~A~~~~~~~~~~~~~~~------~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~la~~~ 179 (234)
T TIGR02521 106 GTFLCQQGKYEQAMQQFEQAIEDPLYPQ------PARSLENAGLCALKAGDFDKAEKYLTRALQIDPQRPESLLELAELY 179 (234)
T ss_pred HHHHHHcccHHHHHHHHHHHHhcccccc------chHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCChHHHHHHHHHH
Confidence 9999999999999999999998543211 4567888999999999999999999999999999999999999999
Q ss_pred HHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhCCChHHHHHHHHHHHHhCC
Q 006120 246 FGVGEYRAAVKALEEAIFIKPDYADAHCDLASALHAMGEDERAIEVFQKAIDLKP 300 (660)
Q Consensus 246 ~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p 300 (660)
...|++++|+..+++++...|.++..+..++.++...|+.++|..+.+.+....|
T Consensus 180 ~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~ 234 (234)
T TIGR02521 180 YLRGQYKDARAYLERYQQTYNQTAESLWLGIRIARALGDVAAAQRYGAQLQKLFP 234 (234)
T ss_pred HHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHhhCc
Confidence 9999999999999999999998999999999999999999999999888776543
No 39
>KOG1129 consensus TPR repeat-containing protein [General function prediction only]
Probab=99.75 E-value=1.9e-17 Score=159.74 Aligned_cols=250 Identities=14% Similarity=0.100 Sum_probs=226.6
Q ss_pred CcchhhccCchHHHHhccCchhhHHHHHHHHHHHHhhccCCcCCchHHhhhHHHHHHhCCchHHHHhHHHHHHHHHHHHH
Q 006120 24 TAAWAVSPNHGIVFDDTWKIVDDLEILVKRLKAKQAKDGKLKGDNSDAFSDAGWSRELGTSAEISEKRVFWEESTHDYAV 103 (660)
Q Consensus 24 p~~~~~~~~lg~~y~~~~~~~~al~~~~~~~~~a~~~~~~l~~~~~~a~~~~~~~~~l~~~~~~~~~~~~l~~~~~~~g~ 103 (660)
..+|..-..+|.+|...|.+.++...++..++. ....+.+.++..+|....+
T Consensus 220 ~~dwwWk~Q~gkCylrLgm~r~AekqlqssL~q----------------------------~~~~dTfllLskvY~ridQ 271 (478)
T KOG1129|consen 220 TLDWWWKQQMGKCYLRLGMPRRAEKQLQSSLTQ----------------------------FPHPDTFLLLSKVYQRIDQ 271 (478)
T ss_pred hHhHHHHHHHHHHHHHhcChhhhHHHHHHHhhc----------------------------CCchhHHHHHHHHHHHhcc
Confidence 346776789999999999999999999988883 1224566777889999999
Q ss_pred HHHHHHHHHHHHhhccCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHH
Q 006120 104 FVKELGVLRNRADGARSREEAFDGHMAIGRVLYEHQLFKEALVSFKRACELQPTDVRPHFRAGNCLYVLGRYREAKEEYL 183 (660)
Q Consensus 104 ~~~Al~~l~~a~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~ 183 (660)
...|+..+.+.++..|.+ ...+..+++++...+++++|.++|+.+++.+|.+.++...+|.-|+..++++-|+.+|+
T Consensus 272 P~~AL~~~~~gld~fP~~---VT~l~g~ARi~eam~~~~~a~~lYk~vlk~~~~nvEaiAcia~~yfY~~~PE~AlryYR 348 (478)
T KOG1129|consen 272 PERALLVIGEGLDSFPFD---VTYLLGQARIHEAMEQQEDALQLYKLVLKLHPINVEAIACIAVGYFYDNNPEMALRYYR 348 (478)
T ss_pred HHHHHHHHhhhhhcCCch---hhhhhhhHHHHHHHHhHHHHHHHHHHHHhcCCccceeeeeeeeccccCCChHHHHHHHH
Confidence 999999999999877654 46778899999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHhccCCCchhchHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCC--C-cHHHHHHHHHHHHHCCCHHHHHHHHHH
Q 006120 184 LALEAAETGGNQWAYLLPQIYVNLGIALEGEGMVLSACEYYRESAILCP--T-HFRALKLLGSALFGVGEYRAAVKALEE 260 (660)
Q Consensus 184 ~al~~~p~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p--~-~~~~~~~lg~~~~~~g~~~~A~~~~~~ 260 (660)
+.+++.-. .++.+.++|.++...++++-++..|++++.... + -+++|+++|.+....|++..|..+|+-
T Consensus 349 RiLqmG~~--------speLf~NigLCC~yaqQ~D~~L~sf~RAlstat~~~~aaDvWYNlg~vaV~iGD~nlA~rcfrl 420 (478)
T KOG1129|consen 349 RILQMGAQ--------SPELFCNIGLCCLYAQQIDLVLPSFQRALSTATQPGQAADVWYNLGFVAVTIGDFNLAKRCFRL 420 (478)
T ss_pred HHHHhcCC--------ChHHHhhHHHHHHhhcchhhhHHHHHHHHhhccCcchhhhhhhccceeEEeccchHHHHHHHHH
Confidence 99999887 889999999999999999999999999998743 3 378999999999999999999999999
Q ss_pred HHHhCCCCHHHHHHHHHHHHhCCChHHHHHHHHHHHHhCCCCHHHHHHHHHH
Q 006120 261 AIFIKPDYADAHCDLASALHAMGEDERAIEVFQKAIDLKPGHVDALYNLGGL 312 (660)
Q Consensus 261 al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~La~~ 312 (660)
++..++++.++++|||.+-.+.|+.++|..+++.|-...|+-.+..++++.+
T Consensus 421 aL~~d~~h~ealnNLavL~~r~G~i~~Arsll~~A~s~~P~m~E~~~Nl~~~ 472 (478)
T KOG1129|consen 421 ALTSDAQHGEALNNLAVLAARSGDILGARSLLNAAKSVMPDMAEVTTNLQFM 472 (478)
T ss_pred HhccCcchHHHHHhHHHHHhhcCchHHHHHHHHHhhhhCccccccccceeEE
Confidence 9999999999999999999999999999999999999999988888777654
No 40
>KOG2002 consensus TPR-containing nuclear phosphoprotein that regulates K(+) uptake [Inorganic ion transport and metabolism]
Probab=99.75 E-value=1.8e-15 Score=165.06 Aligned_cols=317 Identities=17% Similarity=0.150 Sum_probs=184.7
Q ss_pred hHhhhcCCcchhhccCchHHHHhccCchhhHHHHHHHHHHHHhhccCCcCCc--hHH--------hhhHHHHHHhCCchH
Q 006120 17 ESQKKQRTAAWAVSPNHGIVFDDTWKIVDDLEILVKRLKAKQAKDGKLKGDN--SDA--------FSDAGWSRELGTSAE 86 (660)
Q Consensus 17 ~~~~~~~p~~~~~~~~lg~~y~~~~~~~~al~~~~~~~~~a~~~~~~l~~~~--~~a--------~~~~~~~~~l~~~~~ 86 (660)
....+++|....++...+.+....+++.+++.++++++.. ....+.++.. +.- -+...|.+.++.+|.
T Consensus 154 ~~Vl~~sp~Nil~LlGkA~i~ynkkdY~~al~yyk~al~i--np~~~aD~rIgig~Cf~kl~~~~~a~~a~~ralqLdp~ 231 (1018)
T KOG2002|consen 154 HFVLKQSPDNILALLGKARIAYNKKDYRGALKYYKKALRI--NPACKADVRIGIGHCFWKLGMSEKALLAFERALQLDPT 231 (1018)
T ss_pred HHHHhhCCcchHHHHHHHHHHhccccHHHHHHHHHHHHhc--CcccCCCccchhhhHHHhccchhhHHHHHHHHHhcChh
Confidence 3466777888777777777777777888888888876652 2111111111 111 122344455555555
Q ss_pred HHHhHHHHHHHHH---HHHHHHHHHHHHHHHHhhcc----------------------------------CcHHHHHHHH
Q 006120 87 ISEKRVFWEESTH---DYAVFVKELGVLRNRADGAR----------------------------------SREEAFDGHM 129 (660)
Q Consensus 87 ~~~~~~~l~~~~~---~~g~~~~Al~~l~~a~~~~~----------------------------------~~~~~~~~~~ 129 (660)
.+.+...++.+.. +...+.+++..+..+....+ ......+.++
T Consensus 232 ~v~alv~L~~~~l~~~d~~s~~~~~~ll~~ay~~n~~nP~~l~~LAn~fyfK~dy~~v~~la~~ai~~t~~~~~~aes~Y 311 (1018)
T KOG2002|consen 232 CVSALVALGEVDLNFNDSDSYKKGVQLLQRAYKENNENPVALNHLANHFYFKKDYERVWHLAEHAIKNTENKSIKAESFY 311 (1018)
T ss_pred hHHHHHHHHHHHHHccchHHHHHHHHHHHHHHhhcCCCcHHHHHHHHHHhhcccHHHHHHHHHHHHHhhhhhHHHHHHHH
Confidence 5555555544332 22334445555544444433 3334446677
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHHhCCCC-HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhccCCCchhchHHHHHHHHH
Q 006120 130 AIGRVLYEHQLFKEALVSFKRACELQPTD-VRPHFRAGNCLYVLGRYREAKEEYLLALEAAETGGNQWAYLLPQIYVNLG 208 (660)
Q Consensus 130 ~lg~~~~~~g~~~~A~~~~~~al~~~p~~-~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~la 208 (660)
.+|++|+.+|+|++|..+|.++++.+|++ .-.++.+|.++...|+++.|..+|+++++..|+ ...+...+|
T Consensus 312 ~~gRs~Ha~Gd~ekA~~yY~~s~k~~~d~~~l~~~GlgQm~i~~~dle~s~~~fEkv~k~~p~--------~~etm~iLG 383 (1018)
T KOG2002|consen 312 QLGRSYHAQGDFEKAFKYYMESLKADNDNFVLPLVGLGQMYIKRGDLEESKFCFEKVLKQLPN--------NYETMKILG 383 (1018)
T ss_pred HHHHHHHhhccHHHHHHHHHHHHccCCCCccccccchhHHHHHhchHHHHHHHHHHHHHhCcc--------hHHHHHHHH
Confidence 78888888888888888888888887776 667778888888888888888888888888777 556666666
Q ss_pred HHHHHCC----CHHHHHHHHHHHHHhCCCcHHHHHHH--------------------------------------HHHHH
Q 006120 209 IALEGEG----MVLSACEYYRESAILCPTHFRALKLL--------------------------------------GSALF 246 (660)
Q Consensus 209 ~~~~~~g----~~~~A~~~~~~al~~~p~~~~~~~~l--------------------------------------g~~~~ 246 (660)
.+|...+ ..++|..++.++++..|.+.++|..+ |..++
T Consensus 384 ~Lya~~~~~~~~~d~a~~~l~K~~~~~~~d~~a~l~laql~e~~d~~~sL~~~~~A~d~L~~~~~~ip~E~LNNvaslhf 463 (1018)
T KOG2002|consen 384 CLYAHSAKKQEKRDKASNVLGKVLEQTPVDSEAWLELAQLLEQTDPWASLDAYGNALDILESKGKQIPPEVLNNVASLHF 463 (1018)
T ss_pred hHHHhhhhhhHHHHHHHHHHHHHHhcccccHHHHHHHHHHHHhcChHHHHHHHHHHHHHHHHcCCCCCHHHHHhHHHHHH
Confidence 6665553 44556666666655555554444444 44445
Q ss_pred HCCCHHHHHHHHHHHHHh-----CCCC-----HHHHHHHHHHHHhCCChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHh
Q 006120 247 GVGEYRAAVKALEEAIFI-----KPDY-----ADAHCDLASALHAMGEDERAIEVFQKAIDLKPGHVDALYNLGGLYMDL 316 (660)
Q Consensus 247 ~~g~~~~A~~~~~~al~~-----~p~~-----~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~La~~~~~~ 316 (660)
..|++++|...+..|+.. +++. ....+|+|.++..+++++.|...|...+...|.+.+++..+|......
T Consensus 464 ~~g~~~~A~~~f~~A~~~~~~~~n~de~~~~~lt~~YNlarl~E~l~~~~~A~e~Yk~Ilkehp~YId~ylRl~~ma~~k 543 (1018)
T KOG2002|consen 464 RLGNIEKALEHFKSALGKLLEVANKDEGKSTNLTLKYNLARLLEELHDTEVAEEMYKSILKEHPGYIDAYLRLGCMARDK 543 (1018)
T ss_pred HhcChHHHHHHHHHHhhhhhhhcCccccccchhHHHHHHHHHHHhhhhhhHHHHHHHHHHHHCchhHHHHHHhhHHHHhc
Confidence 555555555555555544 1111 123455555555555555555555555555555555555555444443
Q ss_pred cCCCHHHHHHHHHHHHcccCC-hhHHHHHH
Q 006120 317 GAGETEEAKKALKEALKMTNR-VELHDAVS 345 (660)
Q Consensus 317 ~~g~~~eA~~~~~~al~l~p~-~~~~~~~~ 345 (660)
++..+|...++.++..+.. ++.+..++
T Consensus 544 --~~~~ea~~~lk~~l~~d~~np~arsl~G 571 (1018)
T KOG2002|consen 544 --NNLYEASLLLKDALNIDSSNPNARSLLG 571 (1018)
T ss_pred --cCcHHHHHHHHHHHhcccCCcHHHHHHH
Confidence 5555666666666555532 33444444
No 41
>KOG1840 consensus Kinesin light chain [Cytoskeleton]
Probab=99.73 E-value=2.4e-15 Score=160.45 Aligned_cols=265 Identities=17% Similarity=0.137 Sum_probs=224.2
Q ss_pred HhhHhhhcCCcchhhccCchHHHHhccCchhhHHHHHHHHHHHHhhccCCcCCchHHhhhHHHHHHhCCchHHHHhHHHH
Q 006120 15 AIESQKKQRTAAWAVSPNHGIVFDDTWKIVDDLEILVKRLKAKQAKDGKLKGDNSDAFSDAGWSRELGTSAEISEKRVFW 94 (660)
Q Consensus 15 ~~~~~~~~~p~~~~~~~~lg~~y~~~~~~~~al~~~~~~~~~a~~~~~~l~~~~~~a~~~~~~~~~l~~~~~~~~~~~~l 94 (660)
..+.....+|..+.+..+++..|...++++.|..-++.+++......| ...+........+
T Consensus 187 ~~~~~~~~~P~~~~~~~~La~~y~~~g~~e~A~~l~k~Al~~l~k~~G-------------------~~hl~va~~l~~~ 247 (508)
T KOG1840|consen 187 QAKGLGDEDPERLRTLRNLAEMYAVQGRLEKAEPLCKQALRILEKTSG-------------------LKHLVVASMLNIL 247 (508)
T ss_pred HHHhcccCCchHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHccC-------------------ccCHHHHHHHHHH
Confidence 356678889999999999999999999999999999999995223332 1222333334457
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhcc-----CcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC--------CCCHHH
Q 006120 95 EESTHDYAVFVKELGVLRNRADGAR-----SREEAFDGHMAIGRVLYEHQLFKEALVSFKRACELQ--------PTDVRP 161 (660)
Q Consensus 95 ~~~~~~~g~~~~Al~~l~~a~~~~~-----~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~--------p~~~~~ 161 (660)
+.++..++++.+|+..|++++.... +++..+..+.+||..|...|++++|..++++++++. |.-+..
T Consensus 248 a~~y~~~~k~~eAv~ly~~AL~i~e~~~G~~h~~va~~l~nLa~ly~~~GKf~EA~~~~e~Al~I~~~~~~~~~~~v~~~ 327 (508)
T KOG1840|consen 248 ALVYRSLGKYDEAVNLYEEALTIREEVFGEDHPAVAATLNNLAVLYYKQGKFAEAEEYCERALEIYEKLLGASHPEVAAQ 327 (508)
T ss_pred HHHHHHhccHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHhccCChHHHHHHHHHHHHHHHHhhccChHHHHHH
Confidence 8999999999999999999998754 778888999999999999999999999999999874 334567
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHhccCCCchhchHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC--------CC
Q 006120 162 HFRAGNCLYVLGRYREAKEEYLLALEAAETGGNQWAYLLPQIYVNLGIALEGEGMVLSACEYYRESAILC--------PT 233 (660)
Q Consensus 162 ~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~--------p~ 233 (660)
+..++.++..++++++|..++++++++..+.........+..+.++|.+|..+|++.+|.+++++++... +.
T Consensus 328 l~~~~~~~~~~~~~Eea~~l~q~al~i~~~~~g~~~~~~a~~~~nl~~l~~~~gk~~ea~~~~k~ai~~~~~~~~~~~~~ 407 (508)
T KOG1840|consen 328 LSELAAILQSMNEYEEAKKLLQKALKIYLDAPGEDNVNLAKIYANLAELYLKMGKYKEAEELYKKAIQILRELLGKKDYG 407 (508)
T ss_pred HHHHHHHHHHhcchhHHHHHHHHHHHHHHhhccccchHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHhcccCcChh
Confidence 8899999999999999999999999987644443333378999999999999999999999999999874 23
Q ss_pred cHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh-------CCCCHHHHHHHHHHHHhCCChHHHHHHHHHHHHh
Q 006120 234 HFRALKLLGSALFGVGEYRAAVKALEEAIFI-------KPDYADAHCDLASALHAMGEDERAIEVFQKAIDL 298 (660)
Q Consensus 234 ~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~-------~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~ 298 (660)
....+.++|..+.+.+++.+|.+.|.+++.+ .|+....+.|||.+|..+|++++|+++.++++..
T Consensus 408 ~~~~l~~la~~~~~~k~~~~a~~l~~~~~~i~~~~g~~~~~~~~~~~nL~~~Y~~~g~~e~a~~~~~~~~~~ 479 (508)
T KOG1840|consen 408 VGKPLNQLAEAYEELKKYEEAEQLFEEAKDIMKLCGPDHPDVTYTYLNLAALYRAQGNYEAAEELEEKVLNA 479 (508)
T ss_pred hhHHHHHHHHHHHHhcccchHHHHHHHHHHHHHHhCCCCCchHHHHHHHHHHHHHcccHHHHHHHHHHHHHH
Confidence 3568899999999999999999999999887 3555778999999999999999999999999854
No 42
>COG3063 PilF Tfp pilus assembly protein PilF [Cell motility and secretion / Intracellular trafficking and secretion]
Probab=99.73 E-value=1.2e-15 Score=141.71 Aligned_cols=213 Identities=19% Similarity=0.124 Sum_probs=196.3
Q ss_pred chHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHhhccCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHH
Q 006120 84 SAEISEKRVFWEESTHDYAVFVKELGVLRNRADGARSREEAFDGHMAIGRVLYEHQLFKEALVSFKRACELQPTDVRPHF 163 (660)
Q Consensus 84 ~~~~~~~~~~l~~~~~~~g~~~~Al~~l~~a~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~ 163 (660)
..+...+++.++.-+...|++..|...++++++..|+.. .+|..+|.+|...|+.+.|.+.|+++++++|++.++++
T Consensus 31 ~~~aa~arlqLal~YL~~gd~~~A~~nlekAL~~DPs~~---~a~~~~A~~Yq~~Ge~~~A~e~YrkAlsl~p~~GdVLN 107 (250)
T COG3063 31 RNEAAKARLQLALGYLQQGDYAQAKKNLEKALEHDPSYY---LAHLVRAHYYQKLGENDLADESYRKALSLAPNNGDVLN 107 (250)
T ss_pred HHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcccH---HHHHHHHHHHHHcCChhhHHHHHHHHHhcCCCccchhh
Confidence 345667889999999999999999999999999888774 89999999999999999999999999999999999999
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHHHhccCCCchhchHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCcHHHHHHHHH
Q 006120 164 RAGNCLYVLGRYREAKEEYLLALEAAETGGNQWAYLLPQIYVNLGIALEGEGMVLSACEYYRESAILCPTHFRALKLLGS 243 (660)
Q Consensus 164 ~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~ 243 (660)
+.|..++.+|++++|...|++|+.. |..+. .+.++.|+|.|..+.|+.+.|..+|+++++++|+.+.....++.
T Consensus 108 NYG~FLC~qg~~~eA~q~F~~Al~~-P~Y~~-----~s~t~eN~G~Cal~~gq~~~A~~~l~raL~~dp~~~~~~l~~a~ 181 (250)
T COG3063 108 NYGAFLCAQGRPEEAMQQFERALAD-PAYGE-----PSDTLENLGLCALKAGQFDQAEEYLKRALELDPQFPPALLELAR 181 (250)
T ss_pred hhhHHHHhCCChHHHHHHHHHHHhC-CCCCC-----cchhhhhhHHHHhhcCCchhHHHHHHHHHHhCcCCChHHHHHHH
Confidence 9999999999999999999999973 44333 67899999999999999999999999999999999999999999
Q ss_pred HHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhCCChHHHHHHHHHHHHhCCCCHHH
Q 006120 244 ALFGVGEYRAAVKALEEAIFIKPDYADAHCDLASALHAMGEDERAIEVFQKAIDLKPGHVDA 305 (660)
Q Consensus 244 ~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~a 305 (660)
..++.|++..|..++++.....+-....+.....+-...|+-+.|-.+=.+.....|...+.
T Consensus 182 ~~~~~~~y~~Ar~~~~~~~~~~~~~A~sL~L~iriak~~gd~~~a~~Y~~qL~r~fP~s~e~ 243 (250)
T COG3063 182 LHYKAGDYAPARLYLERYQQRGGAQAESLLLGIRIAKRLGDRAAAQRYQAQLQRLFPYSEEY 243 (250)
T ss_pred HHHhcccchHHHHHHHHHHhcccccHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCcHHH
Confidence 99999999999999999999888888888888899999999999999988888899987654
No 43
>KOG1125 consensus TPR repeat-containing protein [General function prediction only]
Probab=99.72 E-value=4e-16 Score=161.97 Aligned_cols=225 Identities=13% Similarity=0.147 Sum_probs=196.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhccCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHc
Q 006120 93 FWEESTHDYAVFVKELGVLRNRADGARSREEAFDGHMAIGRVLYEHQLFKEALVSFKRACELQPTDVRPHFRAGNCLYVL 172 (660)
Q Consensus 93 ~l~~~~~~~g~~~~Al~~l~~a~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~ 172 (660)
.-|..+...|.+.+|.-.|+.+++..| ..+++|..||.+....++-..|+..++++++++|++..++..||..|...
T Consensus 290 ~eG~~lm~nG~L~~A~LafEAAVkqdP---~haeAW~~LG~~qaENE~E~~ai~AL~rcl~LdP~NleaLmaLAVSytNe 366 (579)
T KOG1125|consen 290 KEGCNLMKNGDLSEAALAFEAAVKQDP---QHAEAWQKLGITQAENENEQNAISALRRCLELDPTNLEALMALAVSYTNE 366 (579)
T ss_pred HHHHHHHhcCCchHHHHHHHHHHhhCh---HHHHHHHHhhhHhhhccchHHHHHHHHHHHhcCCccHHHHHHHHHHHhhh
Confidence 346777888999999999999988554 55799999999999999999999999999999999999999999999999
Q ss_pred CCHHHHHHHHHHHHHHhccCCCchh-----------------------------------chHHHHHHHHHHHHHHCCCH
Q 006120 173 GRYREAKEEYLLALEAAETGGNQWA-----------------------------------YLLPQIYVNLGIALEGEGMV 217 (660)
Q Consensus 173 g~~~~A~~~~~~al~~~p~~~~~~~-----------------------------------~~~~~~~~~la~~~~~~g~~ 217 (660)
|.-.+|+.++.+-+...|...-... ...+.++..||.+|...|+|
T Consensus 367 g~q~~Al~~L~~Wi~~~p~y~~l~~a~~~~~~~~~~s~~~~~~l~~i~~~fLeaa~~~~~~~DpdvQ~~LGVLy~ls~ef 446 (579)
T KOG1125|consen 367 GLQNQALKMLDKWIRNKPKYVHLVSAGENEDFENTKSFLDSSHLAHIQELFLEAARQLPTKIDPDVQSGLGVLYNLSGEF 446 (579)
T ss_pred hhHHHHHHHHHHHHHhCccchhccccCccccccCCcCCCCHHHHHHHHHHHHHHHHhCCCCCChhHHhhhHHHHhcchHH
Confidence 9999999999999877643210000 01478899999999999999
Q ss_pred HHHHHHHHHHHHhCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhCCChHHHHHHHHHHHH
Q 006120 218 LSACEYYRESAILCPTHFRALKLLGSALFGVGEYRAAVKALEEAIFIKPDYADAHCDLASALHAMGEDERAIEVFQKAID 297 (660)
Q Consensus 218 ~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~ 297 (660)
++|+.+|+.||...|++...|+.||-++....+.++|+..|++|+++.|....+++|||.+++.+|.|++|+.+|-.||.
T Consensus 447 draiDcf~~AL~v~Pnd~~lWNRLGAtLAN~~~s~EAIsAY~rALqLqP~yVR~RyNlgIS~mNlG~ykEA~~hlL~AL~ 526 (579)
T KOG1125|consen 447 DRAVDCFEAALQVKPNDYLLWNRLGATLANGNRSEEAISAYNRALQLQPGYVRVRYNLGISCMNLGAYKEAVKHLLEALS 526 (579)
T ss_pred HHHHHHHHHHHhcCCchHHHHHHhhHHhcCCcccHHHHHHHHHHHhcCCCeeeeehhhhhhhhhhhhHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hCCCC----------HHHHHHHHHHHHHhcCCCHH
Q 006120 298 LKPGH----------VDALYNLGGLYMDLGAGETE 322 (660)
Q Consensus 298 ~~p~~----------~~a~~~La~~~~~~~~g~~~ 322 (660)
+.+.. -.+|..|-.++..+ ++.+
T Consensus 527 mq~ks~~~~~~~~~se~iw~tLR~als~~--~~~D 559 (579)
T KOG1125|consen 527 MQRKSRNHNKAPMASENIWQTLRLALSAM--NRSD 559 (579)
T ss_pred hhhcccccccCCcchHHHHHHHHHHHHHc--CCch
Confidence 86541 23566666666555 5554
No 44
>TIGR00540 hemY_coli hemY protein. This is an uncharacterized protein encoded next to a heme-biosynthetic enzyme in two gamma division proteobacteria (E. coli and H. influenzae). It is known in no other species. The gene symbol hemY is unfortunate in that an unrelated protein, protoporphyrinogen oxidase, is designated as HemG in E. coli but as HemY in Bacillus subtilis.
Probab=99.72 E-value=9.8e-15 Score=157.00 Aligned_cols=279 Identities=14% Similarity=0.041 Sum_probs=213.8
Q ss_pred cCchHHHHhccCchhhHHHHHHHHHHHHhhccCCcCCchHHhhhHHHHHHhCCchHHHHhHHHHHHHHHHHHHHHHHHHH
Q 006120 31 PNHGIVFDDTWKIVDDLEILVKRLKAKQAKDGKLKGDNSDAFSDAGWSRELGTSAEISEKRVFWEESTHDYAVFVKELGV 110 (660)
Q Consensus 31 ~~lg~~y~~~~~~~~al~~~~~~~~~a~~~~~~l~~~~~~a~~~~~~~~~l~~~~~~~~~~~~l~~~~~~~g~~~~Al~~ 110 (660)
..-|+.....|++..+...+.+..+. .+.....+...+++....|++++|...
T Consensus 88 ~~~glla~~~g~~~~A~~~l~~~~~~---------------------------~~~~~~~~llaA~aa~~~g~~~~A~~~ 140 (409)
T TIGR00540 88 TEEALLKLAEGDYAKAEKLIAKNADH---------------------------AAEPVLNLIKAAEAAQQRGDEARANQH 140 (409)
T ss_pred HHHHHHHHhCCCHHHHHHHHHHHhhc---------------------------CCCCHHHHHHHHHHHHHCCCHHHHHHH
Confidence 34466666777766666666555441 122223345568888999999999999
Q ss_pred HHHHHhhccCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhc
Q 006120 111 LRNRADGARSREEAFDGHMAIGRVLYEHQLFKEALVSFKRACELQPTDVRPHFRAGNCLYVLGRYREAKEEYLLALEAAE 190 (660)
Q Consensus 111 l~~a~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p 190 (660)
+.++.+..++... .+....+.++...|++++|...+++.++..|+++.++..++.++...|++++|.+.+.+..+...
T Consensus 141 l~~a~~~~p~~~l--~~~~~~a~l~l~~~~~~~Al~~l~~l~~~~P~~~~~l~ll~~~~~~~~d~~~a~~~l~~l~k~~~ 218 (409)
T TIGR00540 141 LEEAAELAGNDNI--LVEIARTRILLAQNELHAARHGVDKLLEMAPRHKEVLKLAEEAYIRSGAWQALDDIIDNMAKAGL 218 (409)
T ss_pred HHHHHHhCCcCch--HHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHHcCC
Confidence 9999887766531 23455699999999999999999999999999999999999999999999999999999998743
Q ss_pred cCCCchhchHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCC----CcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCC
Q 006120 191 TGGNQWAYLLPQIYVNLGIALEGEGMVLSACEYYRESAILCP----THFRALKLLGSALFGVGEYRAAVKALEEAIFIKP 266 (660)
Q Consensus 191 ~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p----~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p 266 (660)
..+.. ..........-+...+..+++.+.+.++....| +++..+..++..+...|++++|+..++++++..|
T Consensus 219 ~~~~~----~~~l~~~a~~~~l~~~~~~~~~~~L~~~~~~~p~~~~~~~~l~~~~a~~l~~~g~~~~A~~~l~~~l~~~p 294 (409)
T TIGR00540 219 FDDEE----FADLEQKAEIGLLDEAMADEGIDGLLNWWKNQPRHRRHNIALKIALAEHLIDCDDHDSAQEIIFDGLKKLG 294 (409)
T ss_pred CCHHH----HHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHCCHHHhCCHHHHHHHHHHHHHCCChHHHHHHHHHHHhhCC
Confidence 32111 112222222223444555666678888888777 5889999999999999999999999999999999
Q ss_pred CCHHHH--HHHHHHHHhCCChHHHHHHHHHHHHhCCCCH--HHHHHHHHHHHHhcCCCHHHHHHHHH--HHHcccCChhH
Q 006120 267 DYADAH--CDLASALHAMGEDERAIEVFQKAIDLKPGHV--DALYNLGGLYMDLGAGETEEAKKALK--EALKMTNRVEL 340 (660)
Q Consensus 267 ~~~~~~--~~la~~~~~~g~~~~A~~~~~~al~~~p~~~--~a~~~La~~~~~~~~g~~~eA~~~~~--~al~l~p~~~~ 340 (660)
++.... ..........++.++++..++++++..|+++ ..+..+|.++... |++++|.++|+ ++++..|+.+.
T Consensus 295 d~~~~~~~~l~~~~~l~~~~~~~~~~~~e~~lk~~p~~~~~~ll~sLg~l~~~~--~~~~~A~~~le~a~a~~~~p~~~~ 372 (409)
T TIGR00540 295 DDRAISLPLCLPIPRLKPEDNEKLEKLIEKQAKNVDDKPKCCINRALGQLLMKH--GEFIEAADAFKNVAACKEQLDAND 372 (409)
T ss_pred CcccchhHHHHHhhhcCCCChHHHHHHHHHHHHhCCCChhHHHHHHHHHHHHHc--ccHHHHHHHHHHhHHhhcCCCHHH
Confidence 886532 2233344456888999999999999999999 8888999999988 99999999999 57778888765
Q ss_pred HHHH
Q 006120 341 HDAV 344 (660)
Q Consensus 341 ~~~~ 344 (660)
...+
T Consensus 373 ~~~L 376 (409)
T TIGR00540 373 LAMA 376 (409)
T ss_pred HHHH
Confidence 4433
No 45
>PLN02789 farnesyltranstransferase
Probab=99.71 E-value=3.9e-15 Score=152.40 Aligned_cols=224 Identities=14% Similarity=0.020 Sum_probs=194.7
Q ss_pred CCchHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHhhccCcHHHHHHHHHHHHHHHHcC-CHHHHHHHHHHHHHhCCCCHH
Q 006120 82 GTSAEISEKRVFWEESTHDYAVFVKELGVLRNRADGARSREEAFDGHMAIGRVLYEHQ-LFKEALVSFKRACELQPTDVR 160 (660)
Q Consensus 82 ~~~~~~~~~~~~l~~~~~~~g~~~~Al~~l~~a~~~~~~~~~~~~~~~~lg~~~~~~g-~~~~A~~~~~~al~~~p~~~~ 160 (660)
...++-..+..++..++...+..++|+..+.+++...|.. ..+|...+.++...| ++++++..+.++++.+|++..
T Consensus 31 ~y~~~~~~a~~~~ra~l~~~e~serAL~lt~~aI~lnP~~---ytaW~~R~~iL~~L~~~l~eeL~~~~~~i~~npknyq 107 (320)
T PLN02789 31 AYTPEFREAMDYFRAVYASDERSPRALDLTADVIRLNPGN---YTVWHFRRLCLEALDADLEEELDFAEDVAEDNPKNYQ 107 (320)
T ss_pred eeCHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHCchh---HHHHHHHHHHHHHcchhHHHHHHHHHHHHHHCCcchH
Confidence 3445555666666777778888999999999999877665 478999999999998 689999999999999999999
Q ss_pred HHHHHHHHHHHcCCH--HHHHHHHHHHHHHhccCCCchhchHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCcHHHH
Q 006120 161 PHFRAGNCLYVLGRY--REAKEEYLLALEAAETGGNQWAYLLPQIYVNLGIALEGEGMVLSACEYYRESAILCPTHFRAL 238 (660)
Q Consensus 161 ~~~~la~~~~~~g~~--~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~ 238 (660)
+|+..+.++...|+. ++++.++.++++.+|. +..+|...+.++...|++++|++++.++++.+|.+..+|
T Consensus 108 aW~~R~~~l~~l~~~~~~~el~~~~kal~~dpk--------Ny~AW~~R~w~l~~l~~~~eeL~~~~~~I~~d~~N~sAW 179 (320)
T PLN02789 108 IWHHRRWLAEKLGPDAANKELEFTRKILSLDAK--------NYHAWSHRQWVLRTLGGWEDELEYCHQLLEEDVRNNSAW 179 (320)
T ss_pred HhHHHHHHHHHcCchhhHHHHHHHHHHHHhCcc--------cHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHCCCchhHH
Confidence 999999999888874 7889999999999998 889999999999999999999999999999999999999
Q ss_pred HHHHHHHHHC---CCH----HHHHHHHHHHHHhCCCCHHHHHHHHHHHHh----CCChHHHHHHHHHHHHhCCCCHHHHH
Q 006120 239 KLLGSALFGV---GEY----RAAVKALEEAIFIKPDYADAHCDLASALHA----MGEDERAIEVFQKAIDLKPGHVDALY 307 (660)
Q Consensus 239 ~~lg~~~~~~---g~~----~~A~~~~~~al~~~p~~~~~~~~la~~~~~----~g~~~~A~~~~~~al~~~p~~~~a~~ 307 (660)
..++.++... |.+ ++++.+..+++.++|++..+|..++.++.. +++..+|+..+.+++...|.++.++.
T Consensus 180 ~~R~~vl~~~~~l~~~~~~~e~el~y~~~aI~~~P~N~SaW~Yl~~ll~~~~~~l~~~~~~~~~~~~~~~~~~~s~~al~ 259 (320)
T PLN02789 180 NQRYFVITRSPLLGGLEAMRDSELKYTIDAILANPRNESPWRYLRGLFKDDKEALVSDPEVSSVCLEVLSKDSNHVFALS 259 (320)
T ss_pred HHHHHHHHhccccccccccHHHHHHHHHHHHHhCCCCcCHHHHHHHHHhcCCcccccchhHHHHHHHhhcccCCcHHHHH
Confidence 9999988776 333 478888889999999999999999999987 45667899999999999999999999
Q ss_pred HHHHHHHHh
Q 006120 308 NLGGLYMDL 316 (660)
Q Consensus 308 ~La~~~~~~ 316 (660)
.|+.+|...
T Consensus 260 ~l~d~~~~~ 268 (320)
T PLN02789 260 DLLDLLCEG 268 (320)
T ss_pred HHHHHHHhh
Confidence 999999863
No 46
>KOG2003 consensus TPR repeat-containing protein [General function prediction only]
Probab=99.71 E-value=2.2e-15 Score=150.90 Aligned_cols=223 Identities=16% Similarity=0.100 Sum_probs=202.1
Q ss_pred HHHHHHHHHHHHHHhhccCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHH
Q 006120 102 AVFVKELGVLRNRADGARSREEAFDGHMAIGRVLYEHQLFKEALVSFKRACELQPTDVRPHFRAGNCLYVLGRYREAKEE 181 (660)
Q Consensus 102 g~~~~Al~~l~~a~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~ 181 (660)
.++..|..+...++.....++ .++.+.|.+.+..|++++|.+.|++++..+....++++++|..+..+|+.++|+.+
T Consensus 470 k~~~~aqqyad~aln~dryn~---~a~~nkgn~~f~ngd~dka~~~ykeal~ndasc~ealfniglt~e~~~~ldeald~ 546 (840)
T KOG2003|consen 470 KDFADAQQYADIALNIDRYNA---AALTNKGNIAFANGDLDKAAEFYKEALNNDASCTEALFNIGLTAEALGNLDEALDC 546 (840)
T ss_pred cchhHHHHHHHHHhcccccCH---HHhhcCCceeeecCcHHHHHHHHHHHHcCchHHHHHHHHhcccHHHhcCHHHHHHH
Confidence 356677777777776655543 77889999999999999999999999999888899999999999999999999999
Q ss_pred HHHHHHHhccCCCchhchHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHH
Q 006120 182 YLLALEAAETGGNQWAYLLPQIYVNLGIALEGEGMVLSACEYYRESAILCPTHFRALKLLGSALFGVGEYRAAVKALEEA 261 (660)
Q Consensus 182 ~~~al~~~p~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~a 261 (660)
|-+.-.+--+ .+++++.++.+|..+.+..+|++++.++..+-|+++.++..||.+|-+.|+-.+|.+++-..
T Consensus 547 f~klh~il~n--------n~evl~qianiye~led~aqaie~~~q~~slip~dp~ilskl~dlydqegdksqafq~~yds 618 (840)
T KOG2003|consen 547 FLKLHAILLN--------NAEVLVQIANIYELLEDPAQAIELLMQANSLIPNDPAILSKLADLYDQEGDKSQAFQCHYDS 618 (840)
T ss_pred HHHHHHHHHh--------hHHHHHHHHHHHHHhhCHHHHHHHHHHhcccCCCCHHHHHHHHHHhhcccchhhhhhhhhhc
Confidence 9998887766 88999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHhCCCCHHHHHHHHHHHHhCCChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHcccCC
Q 006120 262 IFIKPDYADAHCDLASALHAMGEDERAIEVFQKAIDLKPGHVDALYNLGGLYMDLGAGETEEAKKALKEALKMTNR 337 (660)
Q Consensus 262 l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~La~~~~~~~~g~~~eA~~~~~~al~l~p~ 337 (660)
....|.+.+..-.||..|....=+++|+.+|+++--+.|+.......++.++... |+|.+|...|+......|.
T Consensus 619 yryfp~nie~iewl~ayyidtqf~ekai~y~ekaaliqp~~~kwqlmiasc~rrs--gnyqka~d~yk~~hrkfpe 692 (840)
T KOG2003|consen 619 YRYFPCNIETIEWLAAYYIDTQFSEKAINYFEKAALIQPNQSKWQLMIASCFRRS--GNYQKAFDLYKDIHRKFPE 692 (840)
T ss_pred ccccCcchHHHHHHHHHHHhhHHHHHHHHHHHHHHhcCccHHHHHHHHHHHHHhc--ccHHHHHHHHHHHHHhCcc
Confidence 9999999999999999999999999999999999999999888888889999988 9999999999998887775
No 47
>KOG1173 consensus Anaphase-promoting complex (APC), Cdc16 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=99.71 E-value=1.5e-15 Score=157.01 Aligned_cols=273 Identities=20% Similarity=0.240 Sum_probs=232.3
Q ss_pred HHhHHHHHHHHHHHHHHHHHHHHHHHHHhhccCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHH
Q 006120 88 SEKRVFWEESTHDYAVFVKELGVLRNRADGARSREEAFDGHMAIGRVLYEHQLFKEALVSFKRACELQPTDVRPHFRAGN 167 (660)
Q Consensus 88 ~~~~~~l~~~~~~~g~~~~Al~~l~~a~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~ 167 (660)
.......++......+|.+.++.....++..|-+..... ..+| ++...|+..+-...-.+.++..|+.+-.|+.+|.
T Consensus 244 ~dll~~~ad~~y~~c~f~~c~kit~~lle~dpfh~~~~~--~~ia-~l~el~~~n~Lf~lsh~LV~~yP~~a~sW~aVg~ 320 (611)
T KOG1173|consen 244 LDLLAEKADRLYYGCRFKECLKITEELLEKDPFHLPCLP--LHIA-CLYELGKSNKLFLLSHKLVDLYPSKALSWFAVGC 320 (611)
T ss_pred HHHHHHHHHHHHHcChHHHHHHHhHHHHhhCCCCcchHH--HHHH-HHHHhcccchHHHHHHHHHHhCCCCCcchhhHHH
Confidence 344555667778888999999999999988886654333 3344 8888888887777778888899999999999999
Q ss_pred HHHHcCCHHHHHHHHHHHHHHhccCCCchhchHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHH
Q 006120 168 CLYVLGRYREAKEEYLLALEAAETGGNQWAYLLPQIYVNLGIALEGEGMVLSACEYYRESAILCPTHFRALKLLGSALFG 247 (660)
Q Consensus 168 ~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~ 247 (660)
.|...|++.+|..+|.++..++|. .+.+|...|..+...|..++|+..|..|-++-|........+|.-|..
T Consensus 321 YYl~i~k~seARry~SKat~lD~~--------fgpaWl~fghsfa~e~EhdQAmaaY~tAarl~~G~hlP~LYlgmey~~ 392 (611)
T KOG1173|consen 321 YYLMIGKYSEARRYFSKATTLDPT--------FGPAWLAFGHSFAGEGEHDQAMAAYFTAARLMPGCHLPSLYLGMEYMR 392 (611)
T ss_pred HHHHhcCcHHHHHHHHHHhhcCcc--------ccHHHHHHhHHhhhcchHHHHHHHHHHHHHhccCCcchHHHHHHHHHH
Confidence 999999999999999999999999 889999999999999999999999999999999998888899999999
Q ss_pred CCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhCCChHHHHHHHHHHHHhCC-------CCHHHHHHHHHHHHHhcCCC
Q 006120 248 VGEYRAAVKALEEAIFIKPDYADAHCDLASALHAMGEDERAIEVFQKAIDLKP-------GHVDALYNLGGLYMDLGAGE 320 (660)
Q Consensus 248 ~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p-------~~~~a~~~La~~~~~~~~g~ 320 (660)
.++++-|.++|.+|+.+.|.++.++..+|.+....+.+.+|..+|+.++..-+ .....+.+||.++.++ +.
T Consensus 393 t~n~kLAe~Ff~~A~ai~P~Dplv~~Elgvvay~~~~y~~A~~~f~~~l~~ik~~~~e~~~w~p~~~NLGH~~Rkl--~~ 470 (611)
T KOG1173|consen 393 TNNLKLAEKFFKQALAIAPSDPLVLHELGVVAYTYEEYPEALKYFQKALEVIKSVLNEKIFWEPTLNNLGHAYRKL--NK 470 (611)
T ss_pred hccHHHHHHHHHHHHhcCCCcchhhhhhhheeehHhhhHHHHHHHHHHHHHhhhccccccchhHHHHhHHHHHHHH--hh
Confidence 99999999999999999999999999999999999999999999999995422 2345789999999999 99
Q ss_pred HHHHHHHHHHHHcccCC-hhHHHHHHHHHHHHHHhccCCCCCCCCCCccccCcchHHhhchhhhhhhhHHHHhcCHHHHH
Q 006120 321 TEEAKKALKEALKMTNR-VELHDAVSHLKQLQKKKSKGNRGTNGEGGFDIVEPSKFKTVGERTTVRQDLANALEIRAFQK 399 (660)
Q Consensus 321 ~~eA~~~~~~al~l~p~-~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~al~~~~~~~ 399 (660)
+++|+.+++++|.+.|. ...+..++.+..+. |+...|...+-++|-+.+...
T Consensus 471 ~~eAI~~~q~aL~l~~k~~~~~asig~iy~ll---------------------------gnld~Aid~fhKaL~l~p~n~ 523 (611)
T KOG1173|consen 471 YEEAIDYYQKALLLSPKDASTHASIGYIYHLL---------------------------GNLDKAIDHFHKALALKPDNI 523 (611)
T ss_pred HHHHHHHHHHHHHcCCCchhHHHHHHHHHHHh---------------------------cChHHHHHHHHHHHhcCCccH
Confidence 99999999999999986 44455554444443 445677788888887776653
Q ss_pred H
Q 006120 400 I 400 (660)
Q Consensus 400 ~ 400 (660)
.
T Consensus 524 ~ 524 (611)
T KOG1173|consen 524 F 524 (611)
T ss_pred H
Confidence 3
No 48
>PRK11189 lipoprotein NlpI; Provisional
Probab=99.71 E-value=3.1e-15 Score=153.43 Aligned_cols=214 Identities=16% Similarity=0.104 Sum_probs=170.0
Q ss_pred HHhHHHHHHHHHHHHHHHHHHHHHHHHHhhccCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHH
Q 006120 88 SEKRVFWEESTHDYAVFVKELGVLRNRADGARSREEAFDGHMAIGRVLYEHQLFKEALVSFKRACELQPTDVRPHFRAGN 167 (660)
Q Consensus 88 ~~~~~~l~~~~~~~g~~~~Al~~l~~a~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~ 167 (660)
...+..+|.++...|++.+|+..++++++..|+.+ .+++.+|.++...|++++|+..|+++++++|++..++.++|.
T Consensus 64 a~~~~~~g~~~~~~g~~~~A~~~~~~Al~l~P~~~---~a~~~lg~~~~~~g~~~~A~~~~~~Al~l~P~~~~a~~~lg~ 140 (296)
T PRK11189 64 AQLHYERGVLYDSLGLRALARNDFSQALALRPDMA---DAYNYLGIYLTQAGNFDAAYEAFDSVLELDPTYNYAYLNRGI 140 (296)
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCH---HHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHH
Confidence 45567778899999999999999999999888765 889999999999999999999999999999999999999999
Q ss_pred HHHHcCCHHHHHHHHHHHHHHhccCCCchhchHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHH
Q 006120 168 CLYVLGRYREAKEEYLLALEAAETGGNQWAYLLPQIYVNLGIALEGEGMVLSACEYYRESAILCPTHFRALKLLGSALFG 247 (660)
Q Consensus 168 ~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~ 247 (660)
++...|++++|++.++++++++|+. +... ....+....+++++|+..+.+++...+.. .|. .+.....
T Consensus 141 ~l~~~g~~~eA~~~~~~al~~~P~~--------~~~~-~~~~l~~~~~~~~~A~~~l~~~~~~~~~~--~~~-~~~~~~~ 208 (296)
T PRK11189 141 ALYYGGRYELAQDDLLAFYQDDPND--------PYRA-LWLYLAESKLDPKQAKENLKQRYEKLDKE--QWG-WNIVEFY 208 (296)
T ss_pred HHHHCCCHHHHHHHHHHHHHhCCCC--------HHHH-HHHHHHHccCCHHHHHHHHHHHHhhCCcc--ccH-HHHHHHH
Confidence 9999999999999999999999983 2111 11223456789999999998877553322 222 3555555
Q ss_pred CCCHHHH--HHHHH----HHHHhCCCCHHHHHHHHHHHHhCCChHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHHh
Q 006120 248 VGEYRAA--VKALE----EAIFIKPDYADAHCDLASALHAMGEDERAIEVFQKAIDLKP-GHVDALYNLGGLYMDL 316 (660)
Q Consensus 248 ~g~~~~A--~~~~~----~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p-~~~~a~~~La~~~~~~ 316 (660)
.|+..++ +..+. ..+++.|....+|+++|.++..+|++++|+.+|+++++.+| +..+..+.+..+....
T Consensus 209 lg~~~~~~~~~~~~~~~~~~~~l~~~~~ea~~~Lg~~~~~~g~~~~A~~~~~~Al~~~~~~~~e~~~~~~e~~~~~ 284 (296)
T PRK11189 209 LGKISEETLMERLKAGATDNTELAERLCETYFYLAKYYLSLGDLDEAAALFKLALANNVYNFVEHRYALLELALLG 284 (296)
T ss_pred ccCCCHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCchHHHHHHHHHHHHHHH
Confidence 6665443 32222 23356677789999999999999999999999999999996 6666666665555443
No 49
>KOG2002 consensus TPR-containing nuclear phosphoprotein that regulates K(+) uptake [Inorganic ion transport and metabolism]
Probab=99.71 E-value=4.3e-15 Score=162.08 Aligned_cols=231 Identities=16% Similarity=0.169 Sum_probs=156.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhccCcHHHHHHHHHHHHHHHHc---CCHHHHHHHHHHHHHhCCCCHHHHHHHHHH
Q 006120 92 VFWEESTHDYAVFVKELGVLRNRADGARSREEAFDGHMAIGRVLYEH---QLFKEALVSFKRACELQPTDVRPHFRAGNC 168 (660)
Q Consensus 92 ~~l~~~~~~~g~~~~Al~~l~~a~~~~~~~~~~~~~~~~lg~~~~~~---g~~~~A~~~~~~al~~~p~~~~~~~~la~~ 168 (660)
+..|.+....++.+.|+..+.++++..|.. +.++..||.+-... ..+..+...+.++...++.+|.++..++..
T Consensus 203 Igig~Cf~kl~~~~~a~~a~~ralqLdp~~---v~alv~L~~~~l~~~d~~s~~~~~~ll~~ay~~n~~nP~~l~~LAn~ 279 (1018)
T KOG2002|consen 203 IGIGHCFWKLGMSEKALLAFERALQLDPTC---VSALVALGEVDLNFNDSDSYKKGVQLLQRAYKENNENPVALNHLANH 279 (1018)
T ss_pred chhhhHHHhccchhhHHHHHHHHHhcChhh---HHHHHHHHHHHHHccchHHHHHHHHHHHHHHhhcCCCcHHHHHHHHH
Confidence 333444445555555555555555544422 33334444333332 234555555566666666666666666666
Q ss_pred HHHcCCHHHHHHHHHHHHHHhccCCCchhchHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCc-HHHHHHHHHHHHH
Q 006120 169 LYVLGRYREAKEEYLLALEAAETGGNQWAYLLPQIYVNLGIALEGEGMVLSACEYYRESAILCPTH-FRALKLLGSALFG 247 (660)
Q Consensus 169 ~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~-~~~~~~lg~~~~~ 247 (660)
++..|+|..+..+...++....... ..+..++.+|..+..+|++++|..+|.++++.+|++ .-.++.+|.++..
T Consensus 280 fyfK~dy~~v~~la~~ai~~t~~~~-----~~aes~Y~~gRs~Ha~Gd~ekA~~yY~~s~k~~~d~~~l~~~GlgQm~i~ 354 (1018)
T KOG2002|consen 280 FYFKKDYERVWHLAEHAIKNTENKS-----IKAESFYQLGRSYHAQGDFEKAFKYYMESLKADNDNFVLPLVGLGQMYIK 354 (1018)
T ss_pred HhhcccHHHHHHHHHHHHHhhhhhH-----HHHHHHHHHHHHHHhhccHHHHHHHHHHHHccCCCCccccccchhHHHHH
Confidence 6666666666666666665542211 156678888888888888888888888888888777 6677788888888
Q ss_pred CCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhCC----ChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCCCHHH
Q 006120 248 VGEYRAAVKALEEAIFIKPDYADAHCDLASALHAMG----EDERAIEVFQKAIDLKPGHVDALYNLGGLYMDLGAGETEE 323 (660)
Q Consensus 248 ~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g----~~~~A~~~~~~al~~~p~~~~a~~~La~~~~~~~~g~~~e 323 (660)
.|+++.|+.+|++.+...|++......||.+|...+ ..+.|..+..++++..|.+.++|..++.++.. ++...
T Consensus 355 ~~dle~s~~~fEkv~k~~p~~~etm~iLG~Lya~~~~~~~~~d~a~~~l~K~~~~~~~d~~a~l~laql~e~---~d~~~ 431 (1018)
T KOG2002|consen 355 RGDLEESKFCFEKVLKQLPNNYETMKILGCLYAHSAKKQEKRDKASNVLGKVLEQTPVDSEAWLELAQLLEQ---TDPWA 431 (1018)
T ss_pred hchHHHHHHHHHHHHHhCcchHHHHHHHHhHHHhhhhhhHHHHHHHHHHHHHHhcccccHHHHHHHHHHHHh---cChHH
Confidence 888888888888888888888888888888887665 56777888888888888888888888888775 46666
Q ss_pred HHHHHHHHHc
Q 006120 324 AKKALKEALK 333 (660)
Q Consensus 324 A~~~~~~al~ 333 (660)
++.+|.+|+.
T Consensus 432 sL~~~~~A~d 441 (1018)
T KOG2002|consen 432 SLDAYGNALD 441 (1018)
T ss_pred HHHHHHHHHH
Confidence 6888888774
No 50
>PRK10747 putative protoheme IX biogenesis protein; Provisional
Probab=99.68 E-value=6.5e-14 Score=149.88 Aligned_cols=242 Identities=13% Similarity=0.050 Sum_probs=170.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhccCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH
Q 006120 92 VFWEESTHDYAVFVKELGVLRNRADGARSREEAFDGHMAIGRVLYEHQLFKEALVSFKRACELQPTDVRPHFRAGNCLYV 171 (660)
Q Consensus 92 ~~l~~~~~~~g~~~~Al~~l~~a~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~ 171 (660)
...+......|+++.|...+.++.+..++... ......+.++...|++++|+..++++.+..|+++.++..++.+|..
T Consensus 122 llaA~aA~~~g~~~~A~~~l~~A~~~~~~~~~--~~~l~~a~l~l~~g~~~~Al~~l~~~~~~~P~~~~al~ll~~~~~~ 199 (398)
T PRK10747 122 LLAAEAAQQRGDEARANQHLERAAELADNDQL--PVEITRVRIQLARNENHAARHGVDKLLEVAPRHPEVLRLAEQAYIR 199 (398)
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHhcCCcchH--HHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHH
Confidence 34466778999999999999999987776542 2233458999999999999999999999999999999999999999
Q ss_pred cCCHHHHHHHHHHHHHHhccCCCchhchHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHCCCH
Q 006120 172 LGRYREAKEEYLLALEAAETGGNQWAYLLPQIYVNLGIALEGEGMVLSACEYYRESAILCPTHFRALKLLGSALFGVGEY 251 (660)
Q Consensus 172 ~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~ 251 (660)
.|++++|++.+.+..+..+........+...++..+........+-+.....++..-...|+++.+...++..+...|+.
T Consensus 200 ~gdw~~a~~~l~~l~k~~~~~~~~~~~l~~~a~~~l~~~~~~~~~~~~l~~~w~~lp~~~~~~~~~~~~~A~~l~~~g~~ 279 (398)
T PRK10747 200 TGAWSSLLDILPSMAKAHVGDEEHRAMLEQQAWIGLMDQAMADQGSEGLKRWWKNQSRKTRHQVALQVAMAEHLIECDDH 279 (398)
T ss_pred HHhHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHhCCHHHhCCHHHHHHHHHHHHHCCCH
Confidence 99999999999988876554322111111123333222222333344444444444444566777777777777777777
Q ss_pred HHHHHHHHHHHHhCCCCHHHHHHHHHHHHhCCChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCCCHHHHHHHHHHH
Q 006120 252 RAAVKALEEAIFIKPDYADAHCDLASALHAMGEDERAIEVFQKAIDLKPGHVDALYNLGGLYMDLGAGETEEAKKALKEA 331 (660)
Q Consensus 252 ~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~La~~~~~~~~g~~~eA~~~~~~a 331 (660)
++|...++++++. +.++.....++.+ ..++.++++..+++.++..|+++..+..+|.++... +++++|.++|+++
T Consensus 280 ~~A~~~L~~~l~~-~~~~~l~~l~~~l--~~~~~~~al~~~e~~lk~~P~~~~l~l~lgrl~~~~--~~~~~A~~~le~a 354 (398)
T PRK10747 280 DTAQQIILDGLKR-QYDERLVLLIPRL--KTNNPEQLEKVLRQQIKQHGDTPLLWSTLGQLLMKH--GEWQEASLAFRAA 354 (398)
T ss_pred HHHHHHHHHHHhc-CCCHHHHHHHhhc--cCCChHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHC--CCHHHHHHHHHHH
Confidence 7777777777774 3344444444433 337777777777777777777777777777777776 7777777777777
Q ss_pred HcccCChhH
Q 006120 332 LKMTNRVEL 340 (660)
Q Consensus 332 l~l~p~~~~ 340 (660)
++..|+...
T Consensus 355 l~~~P~~~~ 363 (398)
T PRK10747 355 LKQRPDAYD 363 (398)
T ss_pred HhcCCCHHH
Confidence 777777554
No 51
>PLN02789 farnesyltranstransferase
Probab=99.68 E-value=1.8e-14 Score=147.48 Aligned_cols=209 Identities=17% Similarity=0.064 Sum_probs=181.9
Q ss_pred HHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcC-CHHHHHHHHHHHHHHhccCCCchhchHHHHHHHHHHHHH
Q 006120 134 VLYEHQLFKEALVSFKRACELQPTDVRPHFRAGNCLYVLG-RYREAKEEYLLALEAAETGGNQWAYLLPQIYVNLGIALE 212 (660)
Q Consensus 134 ~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g-~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~la~~~~ 212 (660)
++...+.+++|+..+.++++++|.+..+|...+.++..+| ++++++..++++++.+|+ ...+|...+.++.
T Consensus 46 ~l~~~e~serAL~lt~~aI~lnP~~ytaW~~R~~iL~~L~~~l~eeL~~~~~~i~~npk--------nyqaW~~R~~~l~ 117 (320)
T PLN02789 46 VYASDERSPRALDLTADVIRLNPGNYTVWHFRRLCLEALDADLEEELDFAEDVAEDNPK--------NYQIWHHRRWLAE 117 (320)
T ss_pred HHHcCCCCHHHHHHHHHHHHHCchhHHHHHHHHHHHHHcchhHHHHHHHHHHHHHHCCc--------chHHhHHHHHHHH
Confidence 3445678899999999999999999999999999999999 689999999999999999 7888999999998
Q ss_pred HCCCH--HHHHHHHHHHHHhCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhC---CCh--
Q 006120 213 GEGMV--LSACEYYRESAILCPTHFRALKLLGSALFGVGEYRAAVKALEEAIFIKPDYADAHCDLASALHAM---GED-- 285 (660)
Q Consensus 213 ~~g~~--~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~---g~~-- 285 (660)
..|+. ++++.+++++++.+|++..+|...+.++...|++++|++++.++|+.+|.+..+|+..+.++... |.+
T Consensus 118 ~l~~~~~~~el~~~~kal~~dpkNy~AW~~R~w~l~~l~~~~eeL~~~~~~I~~d~~N~sAW~~R~~vl~~~~~l~~~~~ 197 (320)
T PLN02789 118 KLGPDAANKELEFTRKILSLDAKNYHAWSHRQWVLRTLGGWEDELEYCHQLLEEDVRNNSAWNQRYFVITRSPLLGGLEA 197 (320)
T ss_pred HcCchhhHHHHHHHHHHHHhCcccHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHCCCchhHHHHHHHHHHhccccccccc
Confidence 88874 78899999999999999999999999999999999999999999999999999999999998776 333
Q ss_pred --HHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhc--CCCHHHHHHHHHHHHcccCChhHHHHHHHHHHHHH
Q 006120 286 --ERAIEVFQKAIDLKPGHVDALYNLGGLYMDLG--AGETEEAKKALKEALKMTNRVELHDAVSHLKQLQK 352 (660)
Q Consensus 286 --~~A~~~~~~al~~~p~~~~a~~~La~~~~~~~--~g~~~eA~~~~~~al~l~p~~~~~~~~~~l~~l~~ 352 (660)
++++.+..++|.++|++..+|..++.++...+ .++..+|...+.+++...|+. ..++..|..+..
T Consensus 198 ~~e~el~y~~~aI~~~P~N~SaW~Yl~~ll~~~~~~l~~~~~~~~~~~~~~~~~~~s--~~al~~l~d~~~ 266 (320)
T PLN02789 198 MRDSELKYTIDAILANPRNESPWRYLRGLFKDDKEALVSDPEVSSVCLEVLSKDSNH--VFALSDLLDLLC 266 (320)
T ss_pred cHHHHHHHHHHHHHhCCCCcCHHHHHHHHHhcCCcccccchhHHHHHHHhhcccCCc--HHHHHHHHHHHH
Confidence 57888999999999999999999999998721 156678999999988876553 335555555444
No 52
>KOG1174 consensus Anaphase-promoting complex (APC), subunit 7 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=99.68 E-value=1.6e-14 Score=143.63 Aligned_cols=280 Identities=18% Similarity=0.159 Sum_probs=229.9
Q ss_pred hhcCCcchhhccCchHHHHhccCchhhHHHHHHHHHHHHhhccCCcCCchHHhhhHHHHHHhCCchHHHHhHHHHHHHHH
Q 006120 20 KKQRTAAWAVSPNHGIVFDDTWKIVDDLEILVKRLKAKQAKDGKLKGDNSDAFSDAGWSRELGTSAEISEKRVFWEESTH 99 (660)
Q Consensus 20 ~~~~p~~~~~~~~lg~~y~~~~~~~~al~~~~~~~~~a~~~~~~l~~~~~~a~~~~~~~~~l~~~~~~~~~~~~l~~~~~ 99 (660)
...-|.+......+|.+++..|+..+++..+++..- ++|....+.. ..+.++.
T Consensus 225 ~~~lr~NvhLl~~lak~~~~~Gdn~~a~~~Fe~~~~--------~dpy~i~~MD-------------------~Ya~LL~ 277 (564)
T KOG1174|consen 225 NTTLRCNEHLMMALGKCLYYNGDYFQAEDIFSSTLC--------ANPDNVEAMD-------------------LYAVLLG 277 (564)
T ss_pred hccCCccHHHHHHHhhhhhhhcCchHHHHHHHHHhh--------CChhhhhhHH-------------------HHHHHHH
Confidence 334455556666677777777777777777766655 3333333322 2244444
Q ss_pred HHHHHHHHHHHHHHHHhhccCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHH
Q 006120 100 DYAVFVKELGVLRNRADGARSREEAFDGHMAIGRVLYEHQLFKEALVSFKRACELQPTDVRPHFRAGNCLYVLGRYREAK 179 (660)
Q Consensus 100 ~~g~~~~Al~~l~~a~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~ 179 (660)
..|+++.--............. ..-|+.-+...+..+++..|+.+-+++++.+|++..++...|.++...|+.++|+
T Consensus 278 ~eg~~e~~~~L~~~Lf~~~~~t---a~~wfV~~~~l~~~K~~~rAL~~~eK~I~~~~r~~~alilKG~lL~~~~R~~~A~ 354 (564)
T KOG1174|consen 278 QEGGCEQDSALMDYLFAKVKYT---ASHWFVHAQLLYDEKKFERALNFVEKCIDSEPRNHEALILKGRLLIALERHTQAV 354 (564)
T ss_pred hccCHhhHHHHHHHHHhhhhcc---hhhhhhhhhhhhhhhhHHHHHHHHHHHhccCcccchHHHhccHHHHhccchHHHH
Confidence 5555555544444444433222 2557888899999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHhccCCCchhchHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCcHHHHHHHH-HHHHHC-CCHHHHHHH
Q 006120 180 EEYLLALEAAETGGNQWAYLLPQIYVNLGIALEGEGMVLSACEYYRESAILCPTHFRALKLLG-SALFGV-GEYRAAVKA 257 (660)
Q Consensus 180 ~~~~~al~~~p~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg-~~~~~~-g~~~~A~~~ 257 (660)
-.|+.|..+.|. ....|..|-.+|...|++.+|....+.++..-|.++.++..+| .++... ---++|.+.
T Consensus 355 IaFR~Aq~Lap~--------rL~~Y~GL~hsYLA~~~~kEA~~~An~~~~~~~~sA~~LtL~g~~V~~~dp~~rEKAKkf 426 (564)
T KOG1174|consen 355 IAFRTAQMLAPY--------RLEIYRGLFHSYLAQKRFKEANALANWTIRLFQNSARSLTLFGTLVLFPDPRMREKAKKF 426 (564)
T ss_pred HHHHHHHhcchh--------hHHHHHHHHHHHHhhchHHHHHHHHHHHHHHhhcchhhhhhhcceeeccCchhHHHHHHH
Confidence 999999999998 8899999999999999999999999999999999999999997 554433 345789999
Q ss_pred HHHHHHhCCCCHHHHHHHHHHHHhCCChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHcccCC
Q 006120 258 LEEAIFIKPDYADAHCDLASALHAMGEDERAIEVFQKAIDLKPGHVDALYNLGGLYMDLGAGETEEAKKALKEALKMTNR 337 (660)
Q Consensus 258 ~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~La~~~~~~~~g~~~eA~~~~~~al~l~p~ 337 (660)
+++++.+.|....+-..+|.++...|++++++..+++.+...|+ ...+..||.++... +.+++|..+|..|+.++|+
T Consensus 427 ~ek~L~~~P~Y~~AV~~~AEL~~~Eg~~~D~i~LLe~~L~~~~D-~~LH~~Lgd~~~A~--Ne~Q~am~~y~~ALr~dP~ 503 (564)
T KOG1174|consen 427 AEKSLKINPIYTPAVNLIAELCQVEGPTKDIIKLLEKHLIIFPD-VNLHNHLGDIMRAQ--NEPQKAMEYYYKALRQDPK 503 (564)
T ss_pred HHhhhccCCccHHHHHHHHHHHHhhCccchHHHHHHHHHhhccc-cHHHHHHHHHHHHh--hhHHHHHHHHHHHHhcCcc
Confidence 99999999999999999999999999999999999999998887 56899999999998 9999999999999999998
Q ss_pred hhH
Q 006120 338 VEL 340 (660)
Q Consensus 338 ~~~ 340 (660)
.+.
T Consensus 504 ~~~ 506 (564)
T KOG1174|consen 504 SKR 506 (564)
T ss_pred chH
Confidence 653
No 53
>KOG2003 consensus TPR repeat-containing protein [General function prediction only]
Probab=99.67 E-value=5.8e-15 Score=147.91 Aligned_cols=285 Identities=17% Similarity=0.141 Sum_probs=233.7
Q ss_pred CcchhhccCchHHHHhccCchhhHHHHHHHHHHHHhhccCCcCCchHHhhhHHHH--------------HHhCCchHHHH
Q 006120 24 TAAWAVSPNHGIVFDDTWKIVDDLEILVKRLKAKQAKDGKLKGDNSDAFSDAGWS--------------RELGTSAEISE 89 (660)
Q Consensus 24 p~~~~~~~~lg~~y~~~~~~~~al~~~~~~~~~a~~~~~~l~~~~~~a~~~~~~~--------------~~l~~~~~~~~ 89 (660)
|-..+.-.+.+..|.+.+++.++++.+.-.-+ ++.+....+..-+..+.++ ..+..+.....
T Consensus 416 ~la~dlei~ka~~~lk~~d~~~aieilkv~~~----kdnk~~saaa~nl~~l~flqggk~~~~aqqyad~aln~dryn~~ 491 (840)
T KOG2003|consen 416 ELAIDLEINKAGELLKNGDIEGAIEILKVFEK----KDNKTASAAANNLCALRFLQGGKDFADAQQYADIALNIDRYNAA 491 (840)
T ss_pred hhhhhhhhhHHHHHHhccCHHHHHHHHHHHHh----ccchhhHHHhhhhHHHHHHhcccchhHHHHHHHHHhcccccCHH
Confidence 33444556778889999999999988754333 1211111111111111111 11222333334
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHhhccCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHH
Q 006120 90 KRVFWEESTHDYAVFVKELGVLRNRADGARSREEAFDGHMAIGRVLYEHQLFKEALVSFKRACELQPTDVRPHFRAGNCL 169 (660)
Q Consensus 90 ~~~~l~~~~~~~g~~~~Al~~l~~a~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~ 169 (660)
+....|.+....|++++|...|++++.... ...++++++|..+..+|+.++|+.+|-+.-.+--+++++++.++.+|
T Consensus 492 a~~nkgn~~f~ngd~dka~~~ykeal~nda---sc~ealfniglt~e~~~~ldeald~f~klh~il~nn~evl~qianiy 568 (840)
T KOG2003|consen 492 ALTNKGNIAFANGDLDKAAEFYKEALNNDA---SCTEALFNIGLTAEALGNLDEALDCFLKLHAILLNNAEVLVQIANIY 568 (840)
T ss_pred HhhcCCceeeecCcHHHHHHHHHHHHcCch---HHHHHHHHhcccHHHhcCHHHHHHHHHHHHHHHHhhHHHHHHHHHHH
Confidence 555566777788999999999999987444 34589999999999999999999999999888888999999999999
Q ss_pred HHcCCHHHHHHHHHHHHHHhccCCCchhchHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHCC
Q 006120 170 YVLGRYREAKEEYLLALEAAETGGNQWAYLLPQIYVNLGIALEGEGMVLSACEYYRESAILCPTHFRALKLLGSALFGVG 249 (660)
Q Consensus 170 ~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g 249 (660)
..+.+..+|++++.++..+-|+ .+.++..||.+|-+.|+-.+|.+++-......|.+.+..-.||..|....
T Consensus 569 e~led~aqaie~~~q~~slip~--------dp~ilskl~dlydqegdksqafq~~ydsyryfp~nie~iewl~ayyidtq 640 (840)
T KOG2003|consen 569 ELLEDPAQAIELLMQANSLIPN--------DPAILSKLADLYDQEGDKSQAFQCHYDSYRYFPCNIETIEWLAAYYIDTQ 640 (840)
T ss_pred HHhhCHHHHHHHHHHhcccCCC--------CHHHHHHHHHHhhcccchhhhhhhhhhcccccCcchHHHHHHHHHHHhhH
Confidence 9999999999999999999999 88999999999999999999999999999999999999999999999999
Q ss_pred CHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhCCChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCCCHHH
Q 006120 250 EYRAAVKALEEAIFIKPDYADAHCDLASALHAMGEDERAIEVFQKAIDLKPGHVDALYNLGGLYMDLGAGETEE 323 (660)
Q Consensus 250 ~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~La~~~~~~~~g~~~e 323 (660)
-+++|+.+|+++--+.|+.......++.|+.+.|+|++|...|+..-...|.+.+.+..|..+...+|..++.+
T Consensus 641 f~ekai~y~ekaaliqp~~~kwqlmiasc~rrsgnyqka~d~yk~~hrkfpedldclkflvri~~dlgl~d~ke 714 (840)
T KOG2003|consen 641 FSEKAINYFEKAALIQPNQSKWQLMIASCFRRSGNYQKAFDLYKDIHRKFPEDLDCLKFLVRIAGDLGLKDAKE 714 (840)
T ss_pred HHHHHHHHHHHHHhcCccHHHHHHHHHHHHHhcccHHHHHHHHHHHHHhCccchHHHHHHHHHhccccchhHHH
Confidence 99999999999999999988888899999999999999999999999999999999999999988873333333
No 54
>KOG4162 consensus Predicted calmodulin-binding protein [Signal transduction mechanisms]
Probab=99.67 E-value=7.7e-14 Score=149.20 Aligned_cols=298 Identities=18% Similarity=0.153 Sum_probs=235.2
Q ss_pred CcchhhccCchHHH-HhccCchhhHHHHHHHHHHHHhhccCCcCCchHHhhhHHHHHHhCCchHHHHhHHHHHHHHHHHH
Q 006120 24 TAAWAVSPNHGIVF-DDTWKIVDDLEILVKRLKAKQAKDGKLKGDNSDAFSDAGWSRELGTSAEISEKRVFWEESTHDYA 102 (660)
Q Consensus 24 p~~~~~~~~lg~~y-~~~~~~~~al~~~~~~~~~a~~~~~~l~~~~~~a~~~~~~~~~l~~~~~~~~~~~~l~~~~~~~g 102 (660)
|.+...+.-...++ ...+...+.+++..+++.......+.+.+......+............+. ....
T Consensus 390 ps~~s~~Lmasklc~e~l~~~eegldYA~kai~~~~~~~~~l~~~~~l~lGi~y~~~A~~a~~~s-----------eR~~ 458 (799)
T KOG4162|consen 390 PSDISVLLMASKLCIERLKLVEEGLDYAQKAISLLGGQRSHLKPRGYLFLGIAYGFQARQANLKS-----------ERDA 458 (799)
T ss_pred CCcchHHHHHHHHHHhchhhhhhHHHHHHHHHHHhhhhhhhhhhhHHHHHHHHHHhHhhcCCChH-----------HHHH
Confidence 55555554444444 45677888999999888854344444444443333322222211111111 1223
Q ss_pred HHHHHHHHHHHHHhhccCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHH
Q 006120 103 VFVKELGVLRNRADGARSREEAFDGHMAIGRVLYEHQLFKEALVSFKRACELQ-PTDVRPHFRAGNCLYVLGRYREAKEE 181 (660)
Q Consensus 103 ~~~~Al~~l~~a~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~la~~~~~~g~~~~A~~~ 181 (660)
...++++.++++++..++++ .+.+.++.-|..+++.+.|..+.+++++.+ .+++.+|..++.++...+++.+|+..
T Consensus 459 ~h~kslqale~av~~d~~dp---~~if~lalq~A~~R~l~sAl~~~~eaL~l~~~~~~~~whLLALvlSa~kr~~~Al~v 535 (799)
T KOG4162|consen 459 LHKKSLQALEEAVQFDPTDP---LVIFYLALQYAEQRQLTSALDYAREALALNRGDSAKAWHLLALVLSAQKRLKEALDV 535 (799)
T ss_pred HHHHHHHHHHHHHhcCCCCc---hHHHHHHHHHHHHHhHHHHHHHHHHHHHhcCCccHHHHHHHHHHHhhhhhhHHHHHH
Confidence 45678888899988888777 777889999999999999999999999994 45788999999999999999999998
Q ss_pred HHHHHHHhccCCCc---------------------------hh----------c--------------------------
Q 006120 182 YLLALEAAETGGNQ---------------------------WA----------Y-------------------------- 198 (660)
Q Consensus 182 ~~~al~~~p~~~~~---------------------------~~----------~-------------------------- 198 (660)
.+.++.-.+++... |. .
T Consensus 536 vd~al~E~~~N~~l~~~~~~i~~~~~~~e~~l~t~~~~L~~we~~~~~q~~~~~g~~~~lk~~l~la~~q~~~a~s~sr~ 615 (799)
T KOG4162|consen 536 VDAALEEFGDNHVLMDGKIHIELTFNDREEALDTCIHKLALWEAEYGVQQTLDEGKLLRLKAGLHLALSQPTDAISTSRY 615 (799)
T ss_pred HHHHHHHhhhhhhhchhhhhhhhhcccHHHHHHHHHHHHHHHHhhhhHhhhhhhhhhhhhhcccccCcccccccchhhHH
Confidence 88888776661100 00 0
Q ss_pred --------------------------------hHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHH
Q 006120 199 --------------------------------LLPQIYVNLGIALEGEGMVLSACEYYRESAILCPTHFRALKLLGSALF 246 (660)
Q Consensus 199 --------------------------------~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~ 246 (660)
.....|...+..+...++.++|..++.++-.+.|..+..|+..|.++.
T Consensus 616 ls~l~a~~~~~~~se~~Lp~s~~~~~~~~~~~~~~~lwllaa~~~~~~~~~~~a~~CL~Ea~~~~~l~~~~~~~~G~~~~ 695 (799)
T KOG4162|consen 616 LSSLVASQLKSAGSELKLPSSTVLPGPDSLWYLLQKLWLLAADLFLLSGNDDEARSCLLEASKIDPLSASVYYLRGLLLE 695 (799)
T ss_pred HHHHHHhhhhhcccccccCcccccCCCCchHHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHhcchhhHHHHHHhhHHHH
Confidence 023456678888899999999999999999999999999999999999
Q ss_pred HCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhCCChHHHHH--HHHHHHHhCCCCHHHHHHHHHHHHHhcCCCHHHH
Q 006120 247 GVGEYRAAVKALEEAIFIKPDYADAHCDLASALHAMGEDERAIE--VFQKAIDLKPGHVDALYNLGGLYMDLGAGETEEA 324 (660)
Q Consensus 247 ~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~--~~~~al~~~p~~~~a~~~La~~~~~~~~g~~~eA 324 (660)
..|++.+|.+.|..|+.++|+++.+...+|.++.+.|+..-|.. .+..+++++|.++++|+.+|.++... |+.++|
T Consensus 696 ~~~~~~EA~~af~~Al~ldP~hv~s~~Ala~~lle~G~~~la~~~~~L~dalr~dp~n~eaW~~LG~v~k~~--Gd~~~A 773 (799)
T KOG4162|consen 696 VKGQLEEAKEAFLVALALDPDHVPSMTALAELLLELGSPRLAEKRSLLSDALRLDPLNHEAWYYLGEVFKKL--GDSKQA 773 (799)
T ss_pred HHHhhHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHhCCcchHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHc--cchHHH
Confidence 99999999999999999999999999999999999999988888 99999999999999999999999999 999999
Q ss_pred HHHHHHHHcccCC
Q 006120 325 KKALKEALKMTNR 337 (660)
Q Consensus 325 ~~~~~~al~l~p~ 337 (660)
.++|..++++.+.
T Consensus 774 aecf~aa~qLe~S 786 (799)
T KOG4162|consen 774 AECFQAALQLEES 786 (799)
T ss_pred HHHHHHHHhhccC
Confidence 9999999999866
No 55
>KOG0550 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=99.67 E-value=4.4e-15 Score=148.03 Aligned_cols=281 Identities=21% Similarity=0.227 Sum_probs=228.0
Q ss_pred CchHHHHhccCchhhHHHHHHHHHHHHhhccCCcCCchHHhhhHHHHHHhCCchHHHHhHHHHHHHHHHHHHHHHHHHHH
Q 006120 32 NHGIVFDDTWKIVDDLEILVKRLKAKQAKDGKLKGDNSDAFSDAGWSRELGTSAEISEKRVFWEESTHDYAVFVKELGVL 111 (660)
Q Consensus 32 ~lg~~y~~~~~~~~al~~~~~~~~~a~~~~~~l~~~~~~a~~~~~~~~~l~~~~~~~~~~~~l~~~~~~~g~~~~Al~~l 111 (660)
..|..+++...+.+++..+..+++ +.|++. ..+...+..+...++|+.|+...
T Consensus 54 ~~gn~~yk~k~Y~nal~~yt~Ai~--------~~pd~a-------------------~yy~nRAa~~m~~~~~~~a~~da 106 (486)
T KOG0550|consen 54 EEGNAFYKQKTYGNALKNYTFAID--------MCPDNA-------------------SYYSNRAATLMMLGRFEEALGDA 106 (486)
T ss_pred hhcchHHHHhhHHHHHHHHHHHHH--------hCccch-------------------hhhchhHHHHHHHHhHhhcccch
Confidence 456677777777788887777777 344432 23333455678889999999999
Q ss_pred HHHHhhccCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHH------------HhC------CCCHHHHHHHHHHHHHcC
Q 006120 112 RNRADGARSREEAFDGHMAIGRVLYEHQLFKEALVSFKRAC------------ELQ------PTDVRPHFRAGNCLYVLG 173 (660)
Q Consensus 112 ~~a~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al------------~~~------p~~~~~~~~la~~~~~~g 173 (660)
++.+...+... ..+...+.++...++..+|...++..- .+. |....+...-+.|+...|
T Consensus 107 r~~~r~kd~~~---k~~~r~~~c~~a~~~~i~A~~~~~~~~~~~~anal~~~~~~~~s~s~~pac~~a~~lka~cl~~~~ 183 (486)
T KOG0550|consen 107 RQSVRLKDGFS---KGQLREGQCHLALSDLIEAEEKLKSKQAYKAANALPTLEKLAPSHSREPACFKAKLLKAECLAFLG 183 (486)
T ss_pred hhheecCCCcc---ccccchhhhhhhhHHHHHHHHHhhhhhhhHHhhhhhhhhcccccccCCchhhHHHHhhhhhhhhcc
Confidence 88887666544 466677777777777777776554221 011 222345667789999999
Q ss_pred CHHHHHHHHHHHHHHhccCCCchhchHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCcHH------------HHHHH
Q 006120 174 RYREAKEEYLLALEAAETGGNQWAYLLPQIYVNLGIALEGEGMVLSACEYYRESAILCPTHFR------------ALKLL 241 (660)
Q Consensus 174 ~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~------------~~~~l 241 (660)
++++|...--..+++++. ...+++..|.++...++.+.|+.+|++++.++|++.. .+..-
T Consensus 184 ~~~~a~~ea~~ilkld~~--------n~~al~vrg~~~yy~~~~~ka~~hf~qal~ldpdh~~sk~~~~~~k~le~~k~~ 255 (486)
T KOG0550|consen 184 DYDEAQSEAIDILKLDAT--------NAEALYVRGLCLYYNDNADKAINHFQQALRLDPDHQKSKSASMMPKKLEVKKER 255 (486)
T ss_pred cchhHHHHHHHHHhcccc--------hhHHHHhcccccccccchHHHHHHHhhhhccChhhhhHHhHhhhHHHHHHHHhh
Confidence 999999999999999998 8899999999999999999999999999999998743 56677
Q ss_pred HHHHHHCCCHHHHHHHHHHHHHhCCCC----HHHHHHHHHHHHhCCChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhc
Q 006120 242 GSALFGVGEYRAAVKALEEAIFIKPDY----ADAHCDLASALHAMGEDERAIEVFQKAIDLKPGHVDALYNLGGLYMDLG 317 (660)
Q Consensus 242 g~~~~~~g~~~~A~~~~~~al~~~p~~----~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~La~~~~~~~ 317 (660)
|+-.++.|++..|.+.|..+|.++|++ +..|.+.+.+...+|+..+|+..++.+++++|....++...|.++..+
T Consensus 256 gN~~fk~G~y~~A~E~Yteal~idP~n~~~naklY~nra~v~~rLgrl~eaisdc~~Al~iD~syikall~ra~c~l~l- 334 (486)
T KOG0550|consen 256 GNDAFKNGNYRKAYECYTEALNIDPSNKKTNAKLYGNRALVNIRLGRLREAISDCNEALKIDSSYIKALLRRANCHLAL- 334 (486)
T ss_pred hhhHhhccchhHHHHHHHHhhcCCccccchhHHHHHHhHhhhcccCCchhhhhhhhhhhhcCHHHHHHHHHHHHHHHHH-
Confidence 999999999999999999999999987 567889999999999999999999999999999999999999999999
Q ss_pred CCCHHHHHHHHHHHHcccCChhHHHHHHHHHHHHH
Q 006120 318 AGETEEAKKALKEALKMTNRVELHDAVSHLKQLQK 352 (660)
Q Consensus 318 ~g~~~eA~~~~~~al~l~p~~~~~~~~~~l~~l~~ 352 (660)
++|++|++.|+++++...+.+....+.......+
T Consensus 335 -e~~e~AV~d~~~a~q~~~s~e~r~~l~~A~~aLk 368 (486)
T KOG0550|consen 335 -EKWEEAVEDYEKAMQLEKDCEIRRTLREAQLALK 368 (486)
T ss_pred -HHHHHHHHHHHHHHhhccccchHHHHHHHHHHHH
Confidence 9999999999999999887766666655544333
No 56
>TIGR00540 hemY_coli hemY protein. This is an uncharacterized protein encoded next to a heme-biosynthetic enzyme in two gamma division proteobacteria (E. coli and H. influenzae). It is known in no other species. The gene symbol hemY is unfortunate in that an unrelated protein, protoporphyrinogen oxidase, is designated as HemG in E. coli but as HemY in Bacillus subtilis.
Probab=99.66 E-value=5.1e-14 Score=151.48 Aligned_cols=277 Identities=11% Similarity=-0.052 Sum_probs=217.3
Q ss_pred cCCcchhhccCchHHHHhccCchhhHHHHHHHHHHHHhhccCCcCCchHHhhhHHHHHHhCCchHHHHhHHHHHHHHHHH
Q 006120 22 QRTAAWAVSPNHGIVFDDTWKIVDDLEILVKRLKAKQAKDGKLKGDNSDAFSDAGWSRELGTSAEISEKRVFWEESTHDY 101 (660)
Q Consensus 22 ~~p~~~~~~~~lg~~y~~~~~~~~al~~~~~~~~~a~~~~~~l~~~~~~a~~~~~~~~~l~~~~~~~~~~~~l~~~~~~~ 101 (660)
..|...-.+...|.++.+.|++..+...+.++.+. .++.. .......+.++...
T Consensus 113 ~~~~~~~~~llaA~aa~~~g~~~~A~~~l~~a~~~--------~p~~~------------------l~~~~~~a~l~l~~ 166 (409)
T TIGR00540 113 HAAEPVLNLIKAAEAAQQRGDEARANQHLEEAAEL--------AGNDN------------------ILVEIARTRILLAQ 166 (409)
T ss_pred cCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh--------CCcCc------------------hHHHHHHHHHHHHC
Confidence 34444444556678888889999999999888763 22211 11223347788889
Q ss_pred HHHHHHHHHHHHHHhhccCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHH----HHHHHHHHcCCHHH
Q 006120 102 AVFVKELGVLRNRADGARSREEAFDGHMAIGRVLYEHQLFKEALVSFKRACELQPTDVRPHF----RAGNCLYVLGRYRE 177 (660)
Q Consensus 102 g~~~~Al~~l~~a~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~----~la~~~~~~g~~~~ 177 (660)
|++++|+..+++..+..|+++ .++..++.++...|++++|.+.+.+..+....++.... ....-+...+..++
T Consensus 167 ~~~~~Al~~l~~l~~~~P~~~---~~l~ll~~~~~~~~d~~~a~~~l~~l~k~~~~~~~~~~~l~~~a~~~~l~~~~~~~ 243 (409)
T TIGR00540 167 NELHAARHGVDKLLEMAPRHK---EVLKLAEEAYIRSGAWQALDDIIDNMAKAGLFDDEEFADLEQKAEIGLLDEAMADE 243 (409)
T ss_pred CCHHHHHHHHHHHHHhCCCCH---HHHHHHHHHHHHHhhHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHhc
Confidence 999999999999999888776 77889999999999999999999999987544443321 22222244455566
Q ss_pred HHHHHHHHHHHhccCCCchhchHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCcHHHH--HHHHHHHHHCCCHHHHH
Q 006120 178 AKEEYLLALEAAETGGNQWAYLLPQIYVNLGIALEGEGMVLSACEYYRESAILCPTHFRAL--KLLGSALFGVGEYRAAV 255 (660)
Q Consensus 178 A~~~~~~al~~~p~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~--~~lg~~~~~~g~~~~A~ 255 (660)
+.+.+.++.+..|..... .+.++..++..+...|++++|...++++++..|++.... ..........++.+.++
T Consensus 244 ~~~~L~~~~~~~p~~~~~----~~~l~~~~a~~l~~~g~~~~A~~~l~~~l~~~pd~~~~~~~~l~~~~~l~~~~~~~~~ 319 (409)
T TIGR00540 244 GIDGLLNWWKNQPRHRRH----NIALKIALAEHLIDCDDHDSAQEIIFDGLKKLGDDRAISLPLCLPIPRLKPEDNEKLE 319 (409)
T ss_pred CHHHHHHHHHHCCHHHhC----CHHHHHHHHHHHHHCCChHHHHHHHHHHHhhCCCcccchhHHHHHhhhcCCCChHHHH
Confidence 677888888877742111 578899999999999999999999999999999987532 22333444568889999
Q ss_pred HHHHHHHHhCCCCH--HHHHHHHHHHHhCCChHHHHHHHH--HHHHhCCCCHHHHHHHHHHHHHhcCCCHHHHHHHHHHH
Q 006120 256 KALEEAIFIKPDYA--DAHCDLASALHAMGEDERAIEVFQ--KAIDLKPGHVDALYNLGGLYMDLGAGETEEAKKALKEA 331 (660)
Q Consensus 256 ~~~~~al~~~p~~~--~~~~~la~~~~~~g~~~~A~~~~~--~al~~~p~~~~a~~~La~~~~~~~~g~~~eA~~~~~~a 331 (660)
+.++++++..|+++ ..+..+|.++...|++++|.++|+ .+++..|+... +..+|.++..+ |+.++|.++++++
T Consensus 320 ~~~e~~lk~~p~~~~~~ll~sLg~l~~~~~~~~~A~~~le~a~a~~~~p~~~~-~~~La~ll~~~--g~~~~A~~~~~~~ 396 (409)
T TIGR00540 320 KLIEKQAKNVDDKPKCCINRALGQLLMKHGEFIEAADAFKNVAACKEQLDAND-LAMAADAFDQA--GDKAEAAAMRQDS 396 (409)
T ss_pred HHHHHHHHhCCCChhHHHHHHHHHHHHHcccHHHHHHHHHHhHHhhcCCCHHH-HHHHHHHHHHc--CCHHHHHHHHHHH
Confidence 99999999999999 889999999999999999999999 57778887655 66999999999 9999999999998
Q ss_pred Hcc
Q 006120 332 LKM 334 (660)
Q Consensus 332 l~l 334 (660)
+..
T Consensus 397 l~~ 399 (409)
T TIGR00540 397 LGL 399 (409)
T ss_pred HHH
Confidence 765
No 57
>KOG2076 consensus RNA polymerase III transcription factor TFIIIC [Transcription]
Probab=99.66 E-value=5.3e-14 Score=152.81 Aligned_cols=238 Identities=18% Similarity=0.135 Sum_probs=153.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhccCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHH
Q 006120 91 RVFWEESTHDYAVFVKELGVLRNRADGARSREEAFDGHMAIGRVLYEHQLFKEALVSFKRACELQPTDVRPHFRAGNCLY 170 (660)
Q Consensus 91 ~~~l~~~~~~~g~~~~Al~~l~~a~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~ 170 (660)
+..+|.++.++|+.++++...--+.-..+++. +.|..++....++|++.+|+-+|.+|++.+|.+....+..+.+|.
T Consensus 176 y~tL~~IyEqrGd~eK~l~~~llAAHL~p~d~---e~W~~ladls~~~~~i~qA~~cy~rAI~~~p~n~~~~~ers~L~~ 252 (895)
T KOG2076|consen 176 YYTLGEIYEQRGDIEKALNFWLLAAHLNPKDY---ELWKRLADLSEQLGNINQARYCYSRAIQANPSNWELIYERSSLYQ 252 (895)
T ss_pred HHHHHHHHHHcccHHHHHHHHHHHHhcCCCCh---HHHHHHHHHHHhcccHHHHHHHHHHHHhcCCcchHHHHHHHHHHH
Confidence 34445555666666666665555554444443 555566666666666666666666666666666666666666666
Q ss_pred HcCCHHHHHHHHHHHHHHhccCCCchhch---------------------------------HHHHHHHHHHHHHHCCCH
Q 006120 171 VLGRYREAKEEYLLALEAAETGGNQWAYL---------------------------------LPQIYVNLGIALEGEGMV 217 (660)
Q Consensus 171 ~~g~~~~A~~~~~~al~~~p~~~~~~~~~---------------------------------~~~~~~~la~~~~~~g~~ 217 (660)
+.|+...|...|.+++.+.|.....+... ....+..++.++.....+
T Consensus 253 ~~G~~~~Am~~f~~l~~~~p~~d~er~~d~i~~~~~~~~~~~~~e~a~~~le~~~s~~~~~~~~ed~ni~ael~l~~~q~ 332 (895)
T KOG2076|consen 253 KTGDLKRAMETFLQLLQLDPPVDIERIEDLIRRVAHYFITHNERERAAKALEGALSKEKDEASLEDLNILAELFLKNKQS 332 (895)
T ss_pred HhChHHHHHHHHHHHHhhCCchhHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhhccccccccHHHHHHHHHHHhHHH
Confidence 66666666666666666655211111000 111223344444444444
Q ss_pred HHHHHHHHHHHH-------------------------------------------------------------hC--C-C
Q 006120 218 LSACEYYRESAI-------------------------------------------------------------LC--P-T 233 (660)
Q Consensus 218 ~~A~~~~~~al~-------------------------------------------------------------~~--p-~ 233 (660)
+.|......... .+ | +
T Consensus 333 d~~~~~i~~~~~r~~e~d~~e~~~~~~~~~~~~~~~~~~~~~s~~l~v~rl~icL~~L~~~e~~e~ll~~l~~~n~~~~d 412 (895)
T KOG2076|consen 333 DKALMKIVDDRNRESEKDDSEWDTDERRREEPNALCEVGKELSYDLRVIRLMICLVHLKERELLEALLHFLVEDNVWVSD 412 (895)
T ss_pred HHhhHHHHHHhccccCCChhhhhhhhhccccccccccCCCCCCccchhHhHhhhhhcccccchHHHHHHHHHHhcCChhh
Confidence 444443332211 00 1 1
Q ss_pred cHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHhCCChHHHHHHHHHHHHhCCCCHHHHHHHHHH
Q 006120 234 HFRALKLLGSALFGVGEYRAAVKALEEAIFIKPD-YADAHCDLASALHAMGEDERAIEVFQKAIDLKPGHVDALYNLGGL 312 (660)
Q Consensus 234 ~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~La~~ 312 (660)
.++.+..++.++...|++.+|+.++..++...+. +..+|..+|.||..+|.+++|+.+|++++.+.|++.++...|+.+
T Consensus 413 ~~dL~~d~a~al~~~~~~~~Al~~l~~i~~~~~~~~~~vw~~~a~c~~~l~e~e~A~e~y~kvl~~~p~~~D~Ri~Lasl 492 (895)
T KOG2076|consen 413 DVDLYLDLADALTNIGKYKEALRLLSPITNREGYQNAFVWYKLARCYMELGEYEEAIEFYEKVLILAPDNLDARITLASL 492 (895)
T ss_pred hHHHHHHHHHHHHhcccHHHHHHHHHHHhcCccccchhhhHHHHHHHHHHhhHHHHHHHHHHHHhcCCCchhhhhhHHHH
Confidence 2446777888888999999999999888877653 367889999999999999999999999999999999999999999
Q ss_pred HHHhcCCCHHHHHHHHHHHHc
Q 006120 313 YMDLGAGETEEAKKALKEALK 333 (660)
Q Consensus 313 ~~~~~~g~~~eA~~~~~~al~ 333 (660)
+..+ |+.++|.+.++....
T Consensus 493 ~~~~--g~~EkalEtL~~~~~ 511 (895)
T KOG2076|consen 493 YQQL--GNHEKALETLEQIIN 511 (895)
T ss_pred HHhc--CCHHHHHHHHhcccC
Confidence 9988 899988888888763
No 58
>COG2956 Predicted N-acetylglucosaminyl transferase [Carbohydrate transport and metabolism]
Probab=99.65 E-value=1.2e-13 Score=133.82 Aligned_cols=244 Identities=15% Similarity=0.140 Sum_probs=212.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhccCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC-----HHHHHHHHHHH
Q 006120 95 EESTHDYAVFVKELGVLRNRADGARSREEAFDGHMAIGRVLYEHQLFKEALVSFKRACELQPTD-----VRPHFRAGNCL 169 (660)
Q Consensus 95 ~~~~~~~g~~~~Al~~l~~a~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~-----~~~~~~la~~~ 169 (660)
|.-+.-..+-++|++.|.+.++ .++..++++..+|..+...|..+.|+.+-+..++. |+. ..+...+|.-|
T Consensus 42 GlNfLLs~Q~dKAvdlF~e~l~---~d~~t~e~~ltLGnLfRsRGEvDRAIRiHQ~L~~s-pdlT~~qr~lAl~qL~~Dy 117 (389)
T COG2956 42 GLNFLLSNQPDKAVDLFLEMLQ---EDPETFEAHLTLGNLFRSRGEVDRAIRIHQTLLES-PDLTFEQRLLALQQLGRDY 117 (389)
T ss_pred HHHHHhhcCcchHHHHHHHHHh---cCchhhHHHHHHHHHHHhcchHHHHHHHHHHHhcC-CCCchHHHHHHHHHHHHHH
Confidence 3334445677899999988887 45566799999999999999999999988776654 442 46888999999
Q ss_pred HHcCCHHHHHHHHHHHHHHhccCCCchhchHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCc-----HHHHHHHHHH
Q 006120 170 YVLGRYREAKEEYLLALEAAETGGNQWAYLLPQIYVNLGIALEGEGMVLSACEYYRESAILCPTH-----FRALKLLGSA 244 (660)
Q Consensus 170 ~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~-----~~~~~~lg~~ 244 (660)
+..|-++.|...|....+...- ...+...|..+|....+|++|++..++..++.++. +..+..|+..
T Consensus 118 m~aGl~DRAE~~f~~L~de~ef--------a~~AlqqLl~IYQ~treW~KAId~A~~L~k~~~q~~~~eIAqfyCELAq~ 189 (389)
T COG2956 118 MAAGLLDRAEDIFNQLVDEGEF--------AEGALQQLLNIYQATREWEKAIDVAERLVKLGGQTYRVEIAQFYCELAQQ 189 (389)
T ss_pred HHhhhhhHHHHHHHHHhcchhh--------hHHHHHHHHHHHHHhhHHHHHHHHHHHHHHcCCccchhHHHHHHHHHHHH
Confidence 9999999999999998875544 66788899999999999999999999999998765 5678899999
Q ss_pred HHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhCCChHHHHHHHHHHHHhCCCC-HHHHHHHHHHHHHhcCCCHHH
Q 006120 245 LFGVGEYRAAVKALEEAIFIKPDYADAHCDLASALHAMGEDERAIEVFQKAIDLKPGH-VDALYNLGGLYMDLGAGETEE 323 (660)
Q Consensus 245 ~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~-~~a~~~La~~~~~~~~g~~~e 323 (660)
+....+.+.|...+.+|++.+|+...+-..+|.+....|+|+.|++.++.+++.+|+. +.+...|..+|..+ |+.++
T Consensus 190 ~~~~~~~d~A~~~l~kAlqa~~~cvRAsi~lG~v~~~~g~y~~AV~~~e~v~eQn~~yl~evl~~L~~~Y~~l--g~~~~ 267 (389)
T COG2956 190 ALASSDVDRARELLKKALQADKKCVRASIILGRVELAKGDYQKAVEALERVLEQNPEYLSEVLEMLYECYAQL--GKPAE 267 (389)
T ss_pred HhhhhhHHHHHHHHHHHHhhCccceehhhhhhHHHHhccchHHHHHHHHHHHHhChHHHHHHHHHHHHHHHHh--CCHHH
Confidence 9999999999999999999999999999999999999999999999999999999987 56888999999999 99999
Q ss_pred HHHHHHHHHcccCChhHHHHHHHHHHHHH
Q 006120 324 AKKALKEALKMTNRVELHDAVSHLKQLQK 352 (660)
Q Consensus 324 A~~~~~~al~l~p~~~~~~~~~~l~~l~~ 352 (660)
...++.++.+..+..+....+..+.....
T Consensus 268 ~~~fL~~~~~~~~g~~~~l~l~~lie~~~ 296 (389)
T COG2956 268 GLNFLRRAMETNTGADAELMLADLIELQE 296 (389)
T ss_pred HHHHHHHHHHccCCccHHHHHHHHHHHhh
Confidence 99999999999998887776666654443
No 59
>KOG1174 consensus Anaphase-promoting complex (APC), subunit 7 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=99.64 E-value=5.3e-14 Score=140.05 Aligned_cols=302 Identities=17% Similarity=0.062 Sum_probs=231.8
Q ss_pred HHHHHHHHHHHHH--HHHHHhhccCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCH
Q 006120 98 THDYAVFVKELGV--LRNRADGARSREEAFDGHMAIGRVLYEHQLFKEALVSFKRACELQPTDVRPHFRAGNCLYVLGRY 175 (660)
Q Consensus 98 ~~~~g~~~~Al~~--l~~a~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~ 175 (660)
....++...+... +-+.....+++ ...+..+|.+++..|++.+|+..|+++..++|......-..|.++...|++
T Consensus 206 q~~~~~hs~a~~t~l~le~~~~lr~N---vhLl~~lak~~~~~Gdn~~a~~~Fe~~~~~dpy~i~~MD~Ya~LL~~eg~~ 282 (564)
T KOG1174|consen 206 QMFNFKHSDASQTFLMLHDNTTLRCN---EHLMMALGKCLYYNGDYFQAEDIFSSTLCANPDNVEAMDLYAVLLGQEGGC 282 (564)
T ss_pred HHHhcccchhhhHHHHHHhhccCCcc---HHHHHHHhhhhhhhcCchHHHHHHHHHhhCChhhhhhHHHHHHHHHhccCH
Confidence 3334444444433 33333334444 478899999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHhccCCCchhchHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHCCCHHHHH
Q 006120 176 REAKEEYLLALEAAETGGNQWAYLLPQIYVNLGIALEGEGMVLSACEYYRESAILCPTHFRALKLLGSALFGVGEYRAAV 255 (660)
Q Consensus 176 ~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~ 255 (660)
++-.......+..... .+.-|+.-+..+...+++..|+.+-++++..+|.+..++...|.++...|+.++|+
T Consensus 283 e~~~~L~~~Lf~~~~~--------ta~~wfV~~~~l~~~K~~~rAL~~~eK~I~~~~r~~~alilKG~lL~~~~R~~~A~ 354 (564)
T KOG1174|consen 283 EQDSALMDYLFAKVKY--------TASHWFVHAQLLYDEKKFERALNFVEKCIDSEPRNHEALILKGRLLIALERHTQAV 354 (564)
T ss_pred hhHHHHHHHHHhhhhc--------chhhhhhhhhhhhhhhhHHHHHHHHHHHhccCcccchHHHhccHHHHhccchHHHH
Confidence 9999988888888766 55666777888889999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHhCCCCHHHHHHHHHHHHhCCChHHHHHHHHHHHHhCCCCHHHHHHHH-HHHHHhcCCCHHHHHHHHHHHHcc
Q 006120 256 KALEEAIFIKPDYADAHCDLASALHAMGEDERAIEVFQKAIDLKPGHVDALYNLG-GLYMDLGAGETEEAKKALKEALKM 334 (660)
Q Consensus 256 ~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~La-~~~~~~~~g~~~eA~~~~~~al~l 334 (660)
-.|+.|..+.|...+.|..|-.+|...|++.+|....+.++..-|.++.++..+| .++.... ---++|.+++++++.+
T Consensus 355 IaFR~Aq~Lap~rL~~Y~GL~hsYLA~~~~kEA~~~An~~~~~~~~sA~~LtL~g~~V~~~dp-~~rEKAKkf~ek~L~~ 433 (564)
T KOG1174|consen 355 IAFRTAQMLAPYRLEIYRGLFHSYLAQKRFKEANALANWTIRLFQNSARSLTLFGTLVLFPDP-RMREKAKKFAEKSLKI 433 (564)
T ss_pred HHHHHHHhcchhhHHHHHHHHHHHHhhchHHHHHHHHHHHHHHhhcchhhhhhhcceeeccCc-hhHHHHHHHHHhhhcc
Confidence 9999999999999999999999999999999999999999999999999988886 5554321 3458899999999999
Q ss_pred cCChhHHHHHHHHHHHHHHhccCCCC---------CCCCCCccccCcchHHhhchhhhhhhhHHHHhcCHHHHHHHHHhc
Q 006120 335 TNRVELHDAVSHLKQLQKKKSKGNRG---------TNGEGGFDIVEPSKFKTVGERTTVRQDLANALEIRAFQKITRLSR 405 (660)
Q Consensus 335 ~p~~~~~~~~~~l~~l~~~~~~~~~~---------~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~al~~~~~~~~~~~~~ 405 (660)
.|.. ..++..+.++....++..++ ...+-.++...+.++.+.+....+...|..|+.+++..+...
T Consensus 434 ~P~Y--~~AV~~~AEL~~~Eg~~~D~i~LLe~~L~~~~D~~LH~~Lgd~~~A~Ne~Q~am~~y~~ALr~dP~~~~sl--- 508 (564)
T KOG1174|consen 434 NPIY--TPAVNLIAELCQVEGPTKDIIKLLEKHLIIFPDVNLHNHLGDIMRAQNEPQKAMEYYYKALRQDPKSKRTL--- 508 (564)
T ss_pred CCcc--HHHHHHHHHHHHhhCccchHHHHHHHHHhhccccHHHHHHHHHHHHhhhHHHHHHHHHHHHhcCccchHHH---
Confidence 8872 22333333333322222222 123344445557777777777888888888887776644333
Q ss_pred cCHHHHHHHhh
Q 006120 406 CDVELLKKEMS 416 (660)
Q Consensus 406 ~~~~~~~~~l~ 416 (660)
.....+.+..+
T Consensus 509 ~Gl~~lEK~~~ 519 (564)
T KOG1174|consen 509 RGLRLLEKSDD 519 (564)
T ss_pred HHHHHHHhccC
Confidence 23444545444
No 60
>KOG0624 consensus dsRNA-activated protein kinase inhibitor P58, contains TPR and DnaJ domains [Defense mechanisms]
Probab=99.64 E-value=2.8e-13 Score=131.98 Aligned_cols=210 Identities=20% Similarity=0.312 Sum_probs=170.3
Q ss_pred CcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhccCCCchhch
Q 006120 120 SREEAFDGHMAIGRVLYEHQLFKEALVSFKRACELQPTDVRPHFRAGNCLYVLGRYREAKEEYLLALEAAETGGNQWAYL 199 (660)
Q Consensus 120 ~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~ 199 (660)
..+..+.-++.+|..++..|++..|+..|..+++.+|++-.+++..|.+|+.+|+-..|+..+.+++++.|+
T Consensus 33 ~~~advekhlElGk~lla~~Q~sDALt~yHaAve~dp~~Y~aifrRaT~yLAmGksk~al~Dl~rVlelKpD-------- 104 (504)
T KOG0624|consen 33 ASPADVEKHLELGKELLARGQLSDALTHYHAAVEGDPNNYQAIFRRATVYLAMGKSKAALQDLSRVLELKPD-------- 104 (504)
T ss_pred CCHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHcCCchhHHHHHHHHHHHhhhcCCccchhhHHHHHhcCcc--------
Confidence 344445667888888888888888888888888888888888888888888888888888888888888888
Q ss_pred HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCcH---HH------------HHHHHHHHHHCCCHHHHHHHHHHHHHh
Q 006120 200 LPQIYVNLGIALEGEGMVLSACEYYRESAILCPTHF---RA------------LKLLGSALFGVGEYRAAVKALEEAIFI 264 (660)
Q Consensus 200 ~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~---~~------------~~~lg~~~~~~g~~~~A~~~~~~al~~ 264 (660)
...+....|.+++++|++++|..-|+..+..+|++. ++ +......+...|++..|+++....+++
T Consensus 105 F~~ARiQRg~vllK~Gele~A~~DF~~vl~~~~s~~~~~eaqskl~~~~e~~~l~~ql~s~~~~GD~~~ai~~i~~llEi 184 (504)
T KOG0624|consen 105 FMAARIQRGVVLLKQGELEQAEADFDQVLQHEPSNGLVLEAQSKLALIQEHWVLVQQLKSASGSGDCQNAIEMITHLLEI 184 (504)
T ss_pred HHHHHHHhchhhhhcccHHHHHHHHHHHHhcCCCcchhHHHHHHHHhHHHHHHHHHHHHHHhcCCchhhHHHHHHHHHhc
Confidence 778888888888888888888888888888887542 11 122233445678888888888888888
Q ss_pred CCCCHHHHHHHHHHHHhCCChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHcccCChh
Q 006120 265 KPDYADAHCDLASALHAMGEDERAIEVFQKAIDLKPGHVDALYNLGGLYMDLGAGETEEAKKALKEALKMTNRVE 339 (660)
Q Consensus 265 ~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~La~~~~~~~~g~~~eA~~~~~~al~l~p~~~ 339 (660)
.|-++..+...+.||...|+...|+..++.+-++..++.+.++.++.+++.. |+.+.++.-.+++|+++|+..
T Consensus 185 ~~Wda~l~~~Rakc~i~~~e~k~AI~Dlk~askLs~DnTe~~ykis~L~Y~v--gd~~~sL~~iRECLKldpdHK 257 (504)
T KOG0624|consen 185 QPWDASLRQARAKCYIAEGEPKKAIHDLKQASKLSQDNTEGHYKISQLLYTV--GDAENSLKEIRECLKLDPDHK 257 (504)
T ss_pred CcchhHHHHHHHHHHHhcCcHHHHHHHHHHHHhccccchHHHHHHHHHHHhh--hhHHHHHHHHHHHHccCcchh
Confidence 8888888888888888888888888888888888888888888888888888 888888888888888888743
No 61
>PRK14574 hmsH outer membrane protein; Provisional
Probab=99.63 E-value=6.4e-13 Score=151.59 Aligned_cols=304 Identities=12% Similarity=-0.033 Sum_probs=220.0
Q ss_pred hhcCCcchhhccCchHHHHhccCchhhHHHHHHHHHHHHhhccCCcCCch-HHhhhHHHHHHhCC--------------c
Q 006120 20 KKQRTAAWAVSPNHGIVFDDTWKIVDDLEILVKRLKAKQAKDGKLKGDNS-DAFSDAGWSRELGT--------------S 84 (660)
Q Consensus 20 ~~~~p~~~~~~~~lg~~y~~~~~~~~al~~~~~~~~~a~~~~~~l~~~~~-~a~~~~~~~~~l~~--------------~ 84 (660)
.--.|+...+.+..+++..+.|++.+|++.+.+.++ ..|.+. .++.-+......+. .
T Consensus 27 ~~~~p~~~~~~y~~aii~~r~Gd~~~Al~~L~qaL~--------~~P~~~~av~dll~l~~~~G~~~~A~~~~eka~~p~ 98 (822)
T PRK14574 27 FVVNPAMADTQYDSLIIRARAGDTAPVLDYLQEESK--------AGPLQSGQVDDWLQIAGWAGRDQEVIDVYERYQSSM 98 (822)
T ss_pred cccCccchhHHHHHHHHHHhCCCHHHHHHHHHHHHh--------hCccchhhHHHHHHHHHHcCCcHHHHHHHHHhccCC
Confidence 334677777889999999999999999999999998 355542 21111111111111 2
Q ss_pred hHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHhhccCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHH
Q 006120 85 AEISEKRVFWEESTHDYAVFVKELGVLRNRADGARSREEAFDGHMAIGRVLYEHQLFKEALVSFKRACELQPTDVRPHFR 164 (660)
Q Consensus 85 ~~~~~~~~~l~~~~~~~g~~~~Al~~l~~a~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~ 164 (660)
+........++.++...|++.+|+..++++++..|+++ .++..++..+...++.++|+..+++++..+|..... ..
T Consensus 99 n~~~~~llalA~ly~~~gdyd~Aiely~kaL~~dP~n~---~~l~gLa~~y~~~~q~~eAl~~l~~l~~~dp~~~~~-l~ 174 (822)
T PRK14574 99 NISSRGLASAARAYRNEKRWDQALALWQSSLKKDPTNP---DLISGMIMTQADAGRGGVVLKQATELAERDPTVQNY-MT 174 (822)
T ss_pred CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCH---HHHHHHHHHHhhcCCHHHHHHHHHHhcccCcchHHH-HH
Confidence 22233344446788899999999999999999998886 566677899999999999999999999999985554 55
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHHHhccCCCchhch---------------------------------------------
Q 006120 165 AGNCLYVLGRYREAKEEYLLALEAAETGGNQWAYL--------------------------------------------- 199 (660)
Q Consensus 165 la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~--------------------------------------------- 199 (660)
++.++...++..+|++.++++++..|.........
T Consensus 175 layL~~~~~~~~~AL~~~ekll~~~P~n~e~~~~~~~~l~~~~~~~~a~~l~~~~p~~f~~~~~~~l~~~~~a~~vr~a~ 254 (822)
T PRK14574 175 LSYLNRATDRNYDALQASSEAVRLAPTSEEVLKNHLEILQRNRIVEPALRLAKENPNLVSAEHYRQLERDAAAEQVRMAV 254 (822)
T ss_pred HHHHHHhcchHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCcHHHHHHHHhCccccCHHHHHHHHHHHHHHHHhhcc
Confidence 66666667888779999999999888653221111
Q ss_pred -----------------------------------------------------------------------HHHHHHHHH
Q 006120 200 -----------------------------------------------------------------------LPQIYVNLG 208 (660)
Q Consensus 200 -----------------------------------------------------------------------~~~~~~~la 208 (660)
-..+....|
T Consensus 255 ~~~~~~~~r~~~~d~ala~~~~l~~~~~~~p~~~~~~~~~~~Drl~aL~~r~r~~~vi~~y~~l~~~~~~~P~y~~~a~a 334 (822)
T PRK14574 255 LPTRSETERFDIADKALADYQNLLTRWGKDPEAQADYQRARIDRLGALLVRHQTADLIKEYEAMEAEGYKMPDYARRWAA 334 (822)
T ss_pred cccccchhhHHHHHHHHHHHHHHHhhccCCCccchHHHHHHHHHHHHHHHhhhHHHHHHHHHHhhhcCCCCCHHHHHHHH
Confidence 123445566
Q ss_pred HHHHHCCCHHHHHHHHHHHHHhCC------CcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCC---------------C
Q 006120 209 IALEGEGMVLSACEYYRESAILCP------THFRALKLLGSALFGVGEYRAAVKALEEAIFIKP---------------D 267 (660)
Q Consensus 209 ~~~~~~g~~~~A~~~~~~al~~~p------~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p---------------~ 267 (660)
..|..++++++|+.+|++++...| ........|...+...+++++|..++++..+..| +
T Consensus 335 dayl~~~~P~kA~~l~~~~~~~~~~~~~~~~~~~~~~~L~yA~ld~e~~~~A~~~l~~~~~~~p~~~~~~~~~~~~pn~d 414 (822)
T PRK14574 335 SAYIDRRLPEKAAPILSSLYYSDGKTFRNSDDLLDADDLYYSLNESEQLDKAYQFAVNYSEQTPYQVGVYGLPGKEPNDD 414 (822)
T ss_pred HHHHhcCCcHHHHHHHHHHhhccccccCCCcchHHHHHHHHHHHhcccHHHHHHHHHHHHhcCCcEEeccCCCCCCCCcc
Confidence 777777788888888887766542 2233345667777788888888888888776433 2
Q ss_pred CHHHHHHHHHHHHhCCChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHcccCC
Q 006120 268 YADAHCDLASALHAMGEDERAIEVFQKAIDLKPGHVDALYNLGGLYMDLGAGETEEAKKALKEALKMTNR 337 (660)
Q Consensus 268 ~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~La~~~~~~~~g~~~eA~~~~~~al~l~p~ 337 (660)
...+...++.++...|++.+|++.+++.+...|.++..+..+|.++... |.+.+|+..++.++.++|+
T Consensus 415 ~~~~~~l~a~~~~~~gdl~~Ae~~le~l~~~aP~n~~l~~~~A~v~~~R--g~p~~A~~~~k~a~~l~P~ 482 (822)
T PRK14574 415 WIEGQTLLVQSLVALNDLPTAQKKLEDLSSTAPANQNLRIALASIYLAR--DLPRKAEQELKAVESLAPR 482 (822)
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhc--CCHHHHHHHHHHHhhhCCc
Confidence 3566777788888888888888888888888888888888888888877 8888888888888877776
No 62
>TIGR03302 OM_YfiO outer membrane assembly lipoprotein YfiO. Members of this protein family include YfiO, a near-essential protein of the outer membrane, part of a complex involved in protein insertion into the bacterial outer membrane. Many proteins in this family are annotated as ComL, based on the involvement of this protein in natural transformation with exogenous DNA in Neisseria gonorrhoeae. This protein family shows sequence similarity to, but is distinct from, the tol-pal system protein YbgF (TIGR02795).
Probab=99.61 E-value=9.2e-14 Score=138.09 Aligned_cols=194 Identities=16% Similarity=0.089 Sum_probs=155.9
Q ss_pred cCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCH---HHHHHHHHHHHHcCCHHHHHHHHHHHHHHhccCCCc
Q 006120 119 RSREEAFDGHMAIGRVLYEHQLFKEALVSFKRACELQPTDV---RPHFRAGNCLYVLGRYREAKEEYLLALEAAETGGNQ 195 (660)
Q Consensus 119 ~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~---~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~ 195 (660)
+..+.....++.+|..++..|++++|+..|++++...|+++ .+++.+|.++...|++++|+..++++++..|+...
T Consensus 27 ~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~a~~~la~~~~~~~~~~~A~~~~~~~l~~~p~~~~- 105 (235)
T TIGR03302 27 PVEEWPAEELYEEAKEALDSGDYTEAIKYFEALESRYPFSPYAEQAQLDLAYAYYKSGDYAEAIAAADRFIRLHPNHPD- 105 (235)
T ss_pred CcccCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCchhHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHCcCCCc-
Confidence 34456678999999999999999999999999999999875 68899999999999999999999999999997543
Q ss_pred hhchHHHHHHHHHHHHHHC--------CCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCC
Q 006120 196 WAYLLPQIYVNLGIALEGE--------GMVLSACEYYRESAILCPTHFRALKLLGSALFGVGEYRAAVKALEEAIFIKPD 267 (660)
Q Consensus 196 ~~~~~~~~~~~la~~~~~~--------g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~ 267 (660)
...+++.+|.++... |++++|+..+++++..+|++..++..+..+.... ..
T Consensus 106 ----~~~a~~~~g~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~a~~~~~~~~----~~------------- 164 (235)
T TIGR03302 106 ----ADYAYYLRGLSNYNQIDRVDRDQTAAREAFEAFQELIRRYPNSEYAPDAKKRMDYLR----NR------------- 164 (235)
T ss_pred ----hHHHHHHHHHHHHHhcccccCCHHHHHHHHHHHHHHHHHCCCChhHHHHHHHHHHHH----HH-------------
Confidence 445788899998876 8899999999999999999866553332221110 00
Q ss_pred CHHHHHHHHHHHHhCCChHHHHHHHHHHHHhCCCC---HHHHHHHHHHHHHhcCCCHHHHHHHHHHHHcccC
Q 006120 268 YADAHCDLASALHAMGEDERAIEVFQKAIDLKPGH---VDALYNLGGLYMDLGAGETEEAKKALKEALKMTN 336 (660)
Q Consensus 268 ~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~---~~a~~~La~~~~~~~~g~~~eA~~~~~~al~l~p 336 (660)
.......+|.++...|++.+|+..+++++...|+. +.+++.+|.++..+ |++++|..+++......|
T Consensus 165 ~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~a~~~l~~~~~~l--g~~~~A~~~~~~l~~~~~ 234 (235)
T TIGR03302 165 LAGKELYVARFYLKRGAYVAAINRFETVVENYPDTPATEEALARLVEAYLKL--GLKDLAQDAAAVLGANYP 234 (235)
T ss_pred HHHHHHHHHHHHHHcCChHHHHHHHHHHHHHCCCCcchHHHHHHHHHHHHHc--CCHHHHHHHHHHHHhhCC
Confidence 01234577888889999999999999998886654 57888999999988 899999988877665444
No 63
>PRK10747 putative protoheme IX biogenesis protein; Provisional
Probab=99.61 E-value=8.1e-13 Score=141.46 Aligned_cols=226 Identities=12% Similarity=-0.027 Sum_probs=182.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhccCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHH--------H
Q 006120 93 FWEESTHDYAVFVKELGVLRNRADGARSREEAFDGHMAIGRVLYEHQLFKEALVSFKRACELQPTDVRPHF--------R 164 (660)
Q Consensus 93 ~l~~~~~~~g~~~~Al~~l~~a~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~--------~ 164 (660)
..+.++...|++++|+..+++..+..|+++ .++..++.+|...|++++|+..+.+..+..+.++.... .
T Consensus 158 ~~a~l~l~~g~~~~Al~~l~~~~~~~P~~~---~al~ll~~~~~~~gdw~~a~~~l~~l~k~~~~~~~~~~~l~~~a~~~ 234 (398)
T PRK10747 158 TRVRIQLARNENHAARHGVDKLLEVAPRHP---EVLRLAEQAYIRTGAWSSLLDILPSMAKAHVGDEEHRAMLEQQAWIG 234 (398)
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHhcCCCCH---HHHHHHHHHHHHHHhHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHH
Confidence 347788999999999999999999888876 77888999999999999999999999987765443222 1
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHHHhccCCCchhchHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCcHHHHHHHHHH
Q 006120 165 AGNCLYVLGRYREAKEEYLLALEAAETGGNQWAYLLPQIYVNLGIALEGEGMVLSACEYYRESAILCPTHFRALKLLGSA 244 (660)
Q Consensus 165 la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~ 244 (660)
+........+-+...+.++..-+..|+ .+.+...++..+...|+.++|...++++++. +.++......+.+
T Consensus 235 l~~~~~~~~~~~~l~~~w~~lp~~~~~--------~~~~~~~~A~~l~~~g~~~~A~~~L~~~l~~-~~~~~l~~l~~~l 305 (398)
T PRK10747 235 LMDQAMADQGSEGLKRWWKNQSRKTRH--------QVALQVAMAEHLIECDDHDTAQQIILDGLKR-QYDERLVLLIPRL 305 (398)
T ss_pred HHHHHHHhcCHHHHHHHHHhCCHHHhC--------CHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc-CCCHHHHHHHhhc
Confidence 111122222333333333333333343 6789999999999999999999999999994 4455554444444
Q ss_pred HHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhCCChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCCCHHHH
Q 006120 245 LFGVGEYRAAVKALEEAIFIKPDYADAHCDLASALHAMGEDERAIEVFQKAIDLKPGHVDALYNLGGLYMDLGAGETEEA 324 (660)
Q Consensus 245 ~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~La~~~~~~~~g~~~eA 324 (660)
..++.+++++.+++.++..|+++..+..+|.++...+++++|..+|+++++..|++ ..+..++.++..+ |+.++|
T Consensus 306 --~~~~~~~al~~~e~~lk~~P~~~~l~l~lgrl~~~~~~~~~A~~~le~al~~~P~~-~~~~~La~~~~~~--g~~~~A 380 (398)
T PRK10747 306 --KTNNPEQLEKVLRQQIKQHGDTPLLWSTLGQLLMKHGEWQEASLAFRAALKQRPDA-YDYAWLADALDRL--HKPEEA 380 (398)
T ss_pred --cCCChHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCH-HHHHHHHHHHHHc--CCHHHH
Confidence 44999999999999999999999999999999999999999999999999999985 4466899999998 999999
Q ss_pred HHHHHHHHccc
Q 006120 325 KKALKEALKMT 335 (660)
Q Consensus 325 ~~~~~~al~l~ 335 (660)
..+|++++.+.
T Consensus 381 ~~~~~~~l~~~ 391 (398)
T PRK10747 381 AAMRRDGLMLT 391 (398)
T ss_pred HHHHHHHHhhh
Confidence 99999998875
No 64
>KOG0495 consensus HAT repeat protein [RNA processing and modification]
Probab=99.60 E-value=5.2e-13 Score=139.81 Aligned_cols=245 Identities=13% Similarity=0.026 Sum_probs=222.9
Q ss_pred CCchHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHhhccCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHH
Q 006120 82 GTSAEISEKRVFWEESTHDYAVFVKELGVLRNRADGARSREEAFDGHMAIGRVLYEHQLFKEALVSFKRACELQPTDVRP 161 (660)
Q Consensus 82 ~~~~~~~~~~~~l~~~~~~~g~~~~Al~~l~~a~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~ 161 (660)
.-.+-....+......--.+|..+.-...+++++...+..+ ..|+..+..+...|+..+|..++.++++.+|++.++
T Consensus 544 qvfp~k~slWlra~~~ek~hgt~Esl~Allqkav~~~pkae---~lwlM~ake~w~agdv~~ar~il~~af~~~pnseei 620 (913)
T KOG0495|consen 544 QVFPCKKSLWLRAAMFEKSHGTRESLEALLQKAVEQCPKAE---ILWLMYAKEKWKAGDVPAARVILDQAFEANPNSEEI 620 (913)
T ss_pred hhccchhHHHHHHHHHHHhcCcHHHHHHHHHHHHHhCCcch---hHHHHHHHHHHhcCCcHHHHHHHHHHHHhCCCcHHH
Confidence 33333444555555566778888888899999999888665 678888999999999999999999999999999999
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHhccCCCchhchHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCcHHHHHHH
Q 006120 162 HFRAGNCLYVLGRYREAKEEYLLALEAAETGGNQWAYLLPQIYVNLGIALEGEGMVLSACEYYRESAILCPTHFRALKLL 241 (660)
Q Consensus 162 ~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l 241 (660)
|+..-.+.....+++.|..++.++....|. ..+|+.-+.....+++.++|+.+++++++..|+....|..+
T Consensus 621 wlaavKle~en~e~eraR~llakar~~sgT---------eRv~mKs~~~er~ld~~eeA~rllEe~lk~fp~f~Kl~lml 691 (913)
T KOG0495|consen 621 WLAAVKLEFENDELERARDLLAKARSISGT---------ERVWMKSANLERYLDNVEEALRLLEEALKSFPDFHKLWLML 691 (913)
T ss_pred HHHHHHHhhccccHHHHHHHHHHHhccCCc---------chhhHHHhHHHHHhhhHHHHHHHHHHHHHhCCchHHHHHHH
Confidence 999999999999999999999999998774 57888889999999999999999999999999999999999
Q ss_pred HHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhCCChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCCCH
Q 006120 242 GSALFGVGEYRAAVKALEEAIFIKPDYADAHCDLASALHAMGEDERAIEVFQKAIDLKPGHVDALYNLGGLYMDLGAGET 321 (660)
Q Consensus 242 g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~La~~~~~~~~g~~ 321 (660)
|.++.++++.+.|...|...++..|..+..|..|+.+-.+.|+.-.|...++++.-.+|.+...|.....+-... |+.
T Consensus 692 GQi~e~~~~ie~aR~aY~~G~k~cP~~ipLWllLakleEk~~~~~rAR~ildrarlkNPk~~~lwle~Ir~ElR~--gn~ 769 (913)
T KOG0495|consen 692 GQIEEQMENIEMAREAYLQGTKKCPNSIPLWLLLAKLEEKDGQLVRARSILDRARLKNPKNALLWLESIRMELRA--GNK 769 (913)
T ss_pred hHHHHHHHHHHHHHHHHHhccccCCCCchHHHHHHHHHHHhcchhhHHHHHHHHHhcCCCcchhHHHHHHHHHHc--CCH
Confidence 999999999999999999999999999999999999999999999999999999999999999999999998888 999
Q ss_pred HHHHHHHHHHHcccCChhH
Q 006120 322 EEAKKALKEALKMTNRVEL 340 (660)
Q Consensus 322 ~eA~~~~~~al~l~p~~~~ 340 (660)
+.|...+.+||+--|+...
T Consensus 770 ~~a~~lmakALQecp~sg~ 788 (913)
T KOG0495|consen 770 EQAELLMAKALQECPSSGL 788 (913)
T ss_pred HHHHHHHHHHHHhCCccch
Confidence 9999999999999998654
No 65
>KOG2076 consensus RNA polymerase III transcription factor TFIIIC [Transcription]
Probab=99.60 E-value=6.3e-13 Score=144.59 Aligned_cols=251 Identities=18% Similarity=0.159 Sum_probs=201.5
Q ss_pred HHhHHHHHHHHHHHHHHHHHHHHHHHHHhhccCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHH
Q 006120 88 SEKRVFWEESTHDYAVFVKELGVLRNRADGARSREEAFDGHMAIGRVLYEHQLFKEALVSFKRACELQPTDVRPHFRAGN 167 (660)
Q Consensus 88 ~~~~~~l~~~~~~~g~~~~Al~~l~~a~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~ 167 (660)
....+..+......|+++.|+..+.+.+++.+..+ .+|+.+|.+|..+|+.+++....-.|-.++|.+.+.|..++.
T Consensus 139 l~~ll~eAN~lfarg~~eeA~~i~~EvIkqdp~~~---~ay~tL~~IyEqrGd~eK~l~~~llAAHL~p~d~e~W~~lad 215 (895)
T KOG2076|consen 139 LRQLLGEANNLFARGDLEEAEEILMEVIKQDPRNP---IAYYTLGEIYEQRGDIEKALNFWLLAAHLNPKDYELWKRLAD 215 (895)
T ss_pred HHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCccch---hhHHHHHHHHHHcccHHHHHHHHHHHHhcCCCChHHHHHHHH
Confidence 34555566777888999999999999999888775 889999999999999999999999999999999999999999
Q ss_pred HHHHcCCHHHHHHHHHHHHHHhccCCCchhchHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCc-----HHH-----
Q 006120 168 CLYVLGRYREAKEEYLLALEAAETGGNQWAYLLPQIYVNLGIALEGEGMVLSACEYYRESAILCPTH-----FRA----- 237 (660)
Q Consensus 168 ~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~-----~~~----- 237 (660)
...++|++.+|.-+|.+|++.+|. .....+..+.+|.+.|++..|...|.+++...|.. -..
T Consensus 216 ls~~~~~i~qA~~cy~rAI~~~p~--------n~~~~~ers~L~~~~G~~~~Am~~f~~l~~~~p~~d~er~~d~i~~~~ 287 (895)
T KOG2076|consen 216 LSEQLGNINQARYCYSRAIQANPS--------NWELIYERSSLYQKTGDLKRAMETFLQLLQLDPPVDIERIEDLIRRVA 287 (895)
T ss_pred HHHhcccHHHHHHHHHHHHhcCCc--------chHHHHHHHHHHHHhChHHHHHHHHHHHHhhCCchhHHHHHHHHHHHH
Confidence 999999999999999999999999 77888999999999999999999999999998832 011
Q ss_pred -------------------------------HHHHHHHHHHCCCHHHHHHHHHHHHHh----------------------
Q 006120 238 -------------------------------LKLLGSALFGVGEYRAAVKALEEAIFI---------------------- 264 (660)
Q Consensus 238 -------------------------------~~~lg~~~~~~g~~~~A~~~~~~al~~---------------------- 264 (660)
+..++.++.+...++.|......-...
T Consensus 288 ~~~~~~~~~e~a~~~le~~~s~~~~~~~~ed~ni~ael~l~~~q~d~~~~~i~~~~~r~~e~d~~e~~~~~~~~~~~~~~ 367 (895)
T KOG2076|consen 288 HYFITHNERERAAKALEGALSKEKDEASLEDLNILAELFLKNKQSDKALMKIVDDRNRESEKDDSEWDTDERRREEPNAL 367 (895)
T ss_pred HHHHHhhHHHHHHHHHHHHHhhccccccccHHHHHHHHHHHhHHHHHhhHHHHHHhccccCCChhhhhhhhhcccccccc
Confidence 122333444444444444333322220
Q ss_pred ---------------------------------------C---CCCHHHHHHHHHHHHhCCChHHHHHHHHHHHHhCCC-
Q 006120 265 ---------------------------------------K---PDYADAHCDLASALHAMGEDERAIEVFQKAIDLKPG- 301 (660)
Q Consensus 265 ---------------------------------------~---p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~- 301 (660)
+ .+++..+..++.+|...|++.+|+.++..+....+.
T Consensus 368 ~~~~~~~s~~l~v~rl~icL~~L~~~e~~e~ll~~l~~~n~~~~d~~dL~~d~a~al~~~~~~~~Al~~l~~i~~~~~~~ 447 (895)
T KOG2076|consen 368 CEVGKELSYDLRVIRLMICLVHLKERELLEALLHFLVEDNVWVSDDVDLYLDLADALTNIGKYKEALRLLSPITNREGYQ 447 (895)
T ss_pred ccCCCCCCccchhHhHhhhhhcccccchHHHHHHHHHHhcCChhhhHHHHHHHHHHHHhcccHHHHHHHHHHHhcCcccc
Confidence 0 012345778999999999999999999999887654
Q ss_pred CHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHcccCC-hhHHHHHHHHHHHH
Q 006120 302 HVDALYNLGGLYMDLGAGETEEAKKALKEALKMTNR-VELHDAVSHLKQLQ 351 (660)
Q Consensus 302 ~~~a~~~La~~~~~~~~g~~~eA~~~~~~al~l~p~-~~~~~~~~~l~~l~ 351 (660)
+...|+.+|.+|..+ |.+++|+.+|++++.+.|. .+..-.+..+.+.+
T Consensus 448 ~~~vw~~~a~c~~~l--~e~e~A~e~y~kvl~~~p~~~D~Ri~Lasl~~~~ 496 (895)
T KOG2076|consen 448 NAFVWYKLARCYMEL--GEYEEAIEFYEKVLILAPDNLDARITLASLYQQL 496 (895)
T ss_pred chhhhHHHHHHHHHH--hhHHHHHHHHHHHHhcCCCchhhhhhHHHHHHhc
Confidence 467999999999999 9999999999999999987 33444444444433
No 66
>PRK15359 type III secretion system chaperone protein SscB; Provisional
Probab=99.58 E-value=6.4e-14 Score=127.27 Aligned_cols=127 Identities=19% Similarity=0.137 Sum_probs=116.3
Q ss_pred HHHHHHHHHHhccCCCchhchHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHCCCHHHHHHHH
Q 006120 179 KEEYLLALEAAETGGNQWAYLLPQIYVNLGIALEGEGMVLSACEYYRESAILCPTHFRALKLLGSALFGVGEYRAAVKAL 258 (660)
Q Consensus 179 ~~~~~~al~~~p~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~ 258 (660)
...++++++++|+ . +..+|.++...|++++|+.+|++++..+|.+..++..+|.++...|++++|+..|
T Consensus 13 ~~~~~~al~~~p~--------~---~~~~g~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~lg~~~~~~g~~~~A~~~y 81 (144)
T PRK15359 13 EDILKQLLSVDPE--------T---VYASGYASWQEGDYSRAVIDFSWLVMAQPWSWRAHIALAGTWMMLKEYTTAINFY 81 (144)
T ss_pred HHHHHHHHHcCHH--------H---HHHHHHHHHHcCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHhhHHHHHHHH
Confidence 4678899999886 3 4568999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHhCCCCHHHHHHHHHHHHhCCChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHh
Q 006120 259 EEAIFIKPDYADAHCDLASALHAMGEDERAIEVFQKAIDLKPGHVDALYNLGGLYMDL 316 (660)
Q Consensus 259 ~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~La~~~~~~ 316 (660)
++++.++|+++.+++++|.++..+|++++|+..|++++++.|+++..+.+++.+...+
T Consensus 82 ~~Al~l~p~~~~a~~~lg~~l~~~g~~~eAi~~~~~Al~~~p~~~~~~~~~~~~~~~l 139 (144)
T PRK15359 82 GHALMLDASHPEPVYQTGVCLKMMGEPGLAREAFQTAIKMSYADASWSEIRQNAQIMV 139 (144)
T ss_pred HHHHhcCCCCcHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHH
Confidence 9999999999999999999999999999999999999999999999999888887654
No 67
>TIGR03302 OM_YfiO outer membrane assembly lipoprotein YfiO. Members of this protein family include YfiO, a near-essential protein of the outer membrane, part of a complex involved in protein insertion into the bacterial outer membrane. Many proteins in this family are annotated as ComL, based on the involvement of this protein in natural transformation with exogenous DNA in Neisseria gonorrhoeae. This protein family shows sequence similarity to, but is distinct from, the tol-pal system protein YbgF (TIGR02795).
Probab=99.58 E-value=2.5e-13 Score=134.95 Aligned_cols=175 Identities=16% Similarity=0.073 Sum_probs=136.6
Q ss_pred CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhccCCCchhchHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCc
Q 006120 155 QPTDVRPHFRAGNCLYVLGRYREAKEEYLLALEAAETGGNQWAYLLPQIYVNLGIALEGEGMVLSACEYYRESAILCPTH 234 (660)
Q Consensus 155 ~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~ 234 (660)
.+..+..++.+|..+...|++++|+..+++++...|.... ...+++.+|.++...|++++|+..++++++..|++
T Consensus 29 ~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~~~~~~p~~~~-----~~~a~~~la~~~~~~~~~~~A~~~~~~~l~~~p~~ 103 (235)
T TIGR03302 29 EEWPAEELYEEAKEALDSGDYTEAIKYFEALESRYPFSPY-----AEQAQLDLAYAYYKSGDYAEAIAAADRFIRLHPNH 103 (235)
T ss_pred ccCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCchh-----HHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHCcCC
Confidence 3557889999999999999999999999999999987432 44688999999999999999999999999999987
Q ss_pred HH---HHHHHHHHHHHC--------CCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhCCChHHHHHHHHHHHHhCCCCH
Q 006120 235 FR---ALKLLGSALFGV--------GEYRAAVKALEEAIFIKPDYADAHCDLASALHAMGEDERAIEVFQKAIDLKPGHV 303 (660)
Q Consensus 235 ~~---~~~~lg~~~~~~--------g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~ 303 (660)
+. +++.+|.++... |++++|+..+++++..+|++..++..+..+.... .. ..
T Consensus 104 ~~~~~a~~~~g~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~a~~~~~~~~----~~-------------~~ 166 (235)
T TIGR03302 104 PDADYAYYLRGLSNYNQIDRVDRDQTAAREAFEAFQELIRRYPNSEYAPDAKKRMDYLR----NR-------------LA 166 (235)
T ss_pred CchHHHHHHHHHHHHHhcccccCCHHHHHHHHHHHHHHHHHCCCChhHHHHHHHHHHHH----HH-------------HH
Confidence 65 788999999876 7899999999999999999876654433222111 00 11
Q ss_pred HHHHHHHHHHHHhcCCCHHHHHHHHHHHHcccCCh-hHHHHHHHHHHHHHH
Q 006120 304 DALYNLGGLYMDLGAGETEEAKKALKEALKMTNRV-ELHDAVSHLKQLQKK 353 (660)
Q Consensus 304 ~a~~~La~~~~~~~~g~~~eA~~~~~~al~l~p~~-~~~~~~~~l~~l~~~ 353 (660)
.....+|.++... |++.+|+..++++++..|+. ....+...+......
T Consensus 167 ~~~~~~a~~~~~~--g~~~~A~~~~~~al~~~p~~~~~~~a~~~l~~~~~~ 215 (235)
T TIGR03302 167 GKELYVARFYLKR--GAYVAAINRFETVVENYPDTPATEEALARLVEAYLK 215 (235)
T ss_pred HHHHHHHHHHHHc--CChHHHHHHHHHHHHHCCCCcchHHHHHHHHHHHHH
Confidence 2345788999988 99999999999999998863 334444444444433
No 68
>KOG0495 consensus HAT repeat protein [RNA processing and modification]
Probab=99.58 E-value=2e-12 Score=135.56 Aligned_cols=222 Identities=18% Similarity=0.166 Sum_probs=119.7
Q ss_pred HHHHHHHHHHHHHHhhccCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHH
Q 006120 102 AVFVKELGVLRNRADGARSREEAFDGHMAIGRVLYEHQLFKEALVSFKRACELQPTDVRPHFRAGNCLYVLGRYREAKEE 181 (660)
Q Consensus 102 g~~~~Al~~l~~a~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~ 181 (660)
|+.-.|...+.++.+..+++. ++|+..-.+.+...+++.|..+|.++....| ...+|+.-+.....+++.++|+.+
T Consensus 598 gdv~~ar~il~~af~~~pnse---eiwlaavKle~en~e~eraR~llakar~~sg-TeRv~mKs~~~er~ld~~eeA~rl 673 (913)
T KOG0495|consen 598 GDVPAARVILDQAFEANPNSE---EIWLAAVKLEFENDELERARDLLAKARSISG-TERVWMKSANLERYLDNVEEALRL 673 (913)
T ss_pred CCcHHHHHHHHHHHHhCCCcH---HHHHHHHHHhhccccHHHHHHHHHHHhccCC-cchhhHHHhHHHHHhhhHHHHHHH
Confidence 455555555555555544433 4444444555555555555555555555443 244555555555555555555555
Q ss_pred HHHHHHHhccCCCchhchHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHH
Q 006120 182 YLLALEAAETGGNQWAYLLPQIYVNLGIALEGEGMVLSACEYYRESAILCPTHFRALKLLGSALFGVGEYRAAVKALEEA 261 (660)
Q Consensus 182 ~~~al~~~p~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~a 261 (660)
++++++..|. ....|..+|+++.++++.+.|...|...++..|.....|..|+.+-.+.|..-.|...++++
T Consensus 674 lEe~lk~fp~--------f~Kl~lmlGQi~e~~~~ie~aR~aY~~G~k~cP~~ipLWllLakleEk~~~~~rAR~ildra 745 (913)
T KOG0495|consen 674 LEEALKSFPD--------FHKLWLMLGQIEEQMENIEMAREAYLQGTKKCPNSIPLWLLLAKLEEKDGQLVRARSILDRA 745 (913)
T ss_pred HHHHHHhCCc--------hHHHHHHHhHHHHHHHHHHHHHHHHHhccccCCCCchHHHHHHHHHHHhcchhhHHHHHHHH
Confidence 5555555555 55555555555555555555555555555555555555555555555555555555555555
Q ss_pred HHhCCCCHHHHHHHHHHHHhCCChHHHHHHHHHHHHhCCC------------------------------CHHHHHHHHH
Q 006120 262 IFIKPDYADAHCDLASALHAMGEDERAIEVFQKAIDLKPG------------------------------HVDALYNLGG 311 (660)
Q Consensus 262 l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~------------------------------~~~a~~~La~ 311 (660)
.-.+|++...|.....+-.+.|+.+.|.....+|++-.|+ ++.++...|.
T Consensus 746 rlkNPk~~~lwle~Ir~ElR~gn~~~a~~lmakALQecp~sg~LWaEaI~le~~~~rkTks~DALkkce~dphVllaia~ 825 (913)
T KOG0495|consen 746 RLKNPKNALLWLESIRMELRAGNKEQAELLMAKALQECPSSGLLWAEAIWLEPRPQRKTKSIDALKKCEHDPHVLLAIAK 825 (913)
T ss_pred HhcCCCcchhHHHHHHHHHHcCCHHHHHHHHHHHHHhCCccchhHHHHHHhccCcccchHHHHHHHhccCCchhHHHHHH
Confidence 5555555555555555555555555555555555444322 2344555566
Q ss_pred HHHHhcCCCHHHHHHHHHHHHcccCC
Q 006120 312 LYMDLGAGETEEAKKALKEALKMTNR 337 (660)
Q Consensus 312 ~~~~~~~g~~~eA~~~~~~al~l~p~ 337 (660)
++... .++++|.++|.+++.++|+
T Consensus 826 lfw~e--~k~~kar~Wf~Ravk~d~d 849 (913)
T KOG0495|consen 826 LFWSE--KKIEKAREWFERAVKKDPD 849 (913)
T ss_pred HHHHH--HHHHHHHHHHHHHHccCCc
Confidence 55555 5666666666666666665
No 69
>KOG0550 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=99.55 E-value=1.8e-13 Score=136.69 Aligned_cols=280 Identities=17% Similarity=0.123 Sum_probs=212.3
Q ss_pred hcCCcchhhccCchHHHHhccCchhhHHHHHHHHHHHHhhccCCcCCchHHhhhHHHHHHhCCchHHHHhHHHHHHHHHH
Q 006120 21 KQRTAAWAVSPNHGIVFDDTWKIVDDLEILVKRLKAKQAKDGKLKGDNSDAFSDAGWSRELGTSAEISEKRVFWEESTHD 100 (660)
Q Consensus 21 ~~~p~~~~~~~~lg~~y~~~~~~~~al~~~~~~~~~a~~~~~~l~~~~~~a~~~~~~~~~l~~~~~~~~~~~~l~~~~~~ 100 (660)
.-.|..+..|.+.+..++..+++.+++-..++..+ +++...........+..-.. +...+...+-. ..
T Consensus 77 ~~~pd~a~yy~nRAa~~m~~~~~~~a~~dar~~~r--------~kd~~~k~~~r~~~c~~a~~--~~i~A~~~~~~--~~ 144 (486)
T KOG0550|consen 77 DMCPDNASYYSNRAATLMMLGRFEEALGDARQSVR--------LKDGFSKGQLREGQCHLALS--DLIEAEEKLKS--KQ 144 (486)
T ss_pred HhCccchhhhchhHHHHHHHHhHhhcccchhhhee--------cCCCccccccchhhhhhhhH--HHHHHHHHhhh--hh
Confidence 44666788888999999999999999988888777 33433333332222211000 00011000000 00
Q ss_pred HHHHHHHHHHHHHHHhhccCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHH
Q 006120 101 YAVFVKELGVLRNRADGARSREEAFDGHMAIGRVLYEHQLFKEALVSFKRACELQPTDVRPHFRAGNCLYVLGRYREAKE 180 (660)
Q Consensus 101 ~g~~~~Al~~l~~a~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~ 180 (660)
-+...+++..++..+......|....+....+.++...|++++|...--..+++++.+.++++..|.+++..++.+.|+.
T Consensus 145 ~~~~anal~~~~~~~~s~s~~pac~~a~~lka~cl~~~~~~~~a~~ea~~ilkld~~n~~al~vrg~~~yy~~~~~ka~~ 224 (486)
T KOG0550|consen 145 AYKAANALPTLEKLAPSHSREPACFKAKLLKAECLAFLGDYDEAQSEAIDILKLDATNAEALYVRGLCLYYNDNADKAIN 224 (486)
T ss_pred hhHHhhhhhhhhcccccccCCchhhHHHHhhhhhhhhcccchhHHHHHHHHHhcccchhHHHHhcccccccccchHHHHH
Confidence 01233444444444443334455567778889999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHhccCCCchhc----hHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCc----HHHHHHHHHHHHHCCCHH
Q 006120 181 EYLLALEAAETGGNQWAY----LLPQIYVNLGIALEGEGMVLSACEYYRESAILCPTH----FRALKLLGSALFGVGEYR 252 (660)
Q Consensus 181 ~~~~al~~~p~~~~~~~~----~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~----~~~~~~lg~~~~~~g~~~ 252 (660)
.|++++.++|+....... .....+..-|.-..+.|++.+|.+.|..+|.++|++ +..|.+++.+..++|+..
T Consensus 225 hf~qal~ldpdh~~sk~~~~~~k~le~~k~~gN~~fk~G~y~~A~E~Yteal~idP~n~~~naklY~nra~v~~rLgrl~ 304 (486)
T KOG0550|consen 225 HFQQALRLDPDHQKSKSASMMPKKLEVKKERGNDAFKNGNYRKAYECYTEALNIDPSNKKTNAKLYGNRALVNIRLGRLR 304 (486)
T ss_pred HHhhhhccChhhhhHHhHhhhHHHHHHHHhhhhhHhhccchhHHHHHHHHhhcCCccccchhHHHHHHhHhhhcccCCch
Confidence 999999999986442210 134567778899999999999999999999999987 557899999999999999
Q ss_pred HHHHHHHHHHHhCCCCHHHHHHHHHHHHhCCChHHHHHHHHHHHHhCCCCHHHHHHHHHHH
Q 006120 253 AAVKALEEAIFIKPDYADAHCDLASALHAMGEDERAIEVFQKAIDLKPGHVDALYNLGGLY 313 (660)
Q Consensus 253 ~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~La~~~ 313 (660)
+|+...+.++.+++....++...|.++..+++|++|++.|+++++...+ ......+..+.
T Consensus 305 eaisdc~~Al~iD~syikall~ra~c~l~le~~e~AV~d~~~a~q~~~s-~e~r~~l~~A~ 364 (486)
T KOG0550|consen 305 EAISDCNEALKIDSSYIKALLRRANCHLALEKWEEAVEDYEKAMQLEKD-CEIRRTLREAQ 364 (486)
T ss_pred hhhhhhhhhhhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccc-cchHHHHHHHH
Confidence 9999999999999999999999999999999999999999999998766 44444444433
No 70
>PRK15359 type III secretion system chaperone protein SscB; Provisional
Probab=99.55 E-value=1e-13 Score=125.92 Aligned_cols=127 Identities=17% Similarity=0.097 Sum_probs=115.2
Q ss_pred HHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhccCCCchhchHHHHHHHHHHHHHHCCCHHHHHHHH
Q 006120 145 LVSFKRACELQPTDVRPHFRAGNCLYVLGRYREAKEEYLLALEAAETGGNQWAYLLPQIYVNLGIALEGEGMVLSACEYY 224 (660)
Q Consensus 145 ~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~ 224 (660)
..+|+++++++|++ +..+|.++...|++++|+..|++++..+|. ...++..+|.++...|++++|+..|
T Consensus 13 ~~~~~~al~~~p~~---~~~~g~~~~~~g~~~~A~~~~~~al~~~P~--------~~~a~~~lg~~~~~~g~~~~A~~~y 81 (144)
T PRK15359 13 EDILKQLLSVDPET---VYASGYASWQEGDYSRAVIDFSWLVMAQPW--------SWRAHIALAGTWMMLKEYTTAINFY 81 (144)
T ss_pred HHHHHHHHHcCHHH---HHHHHHHHHHcCCHHHHHHHHHHHHHcCCC--------cHHHHHHHHHHHHHHhhHHHHHHHH
Confidence 46788999998874 567899999999999999999999999998 8899999999999999999999999
Q ss_pred HHHHHhCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhC
Q 006120 225 RESAILCPTHFRALKLLGSALFGVGEYRAAVKALEEAIFIKPDYADAHCDLASALHAM 282 (660)
Q Consensus 225 ~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~ 282 (660)
++++.++|+++.+++++|.++...|++++|+..|++++.+.|+++..+.++|.+....
T Consensus 82 ~~Al~l~p~~~~a~~~lg~~l~~~g~~~eAi~~~~~Al~~~p~~~~~~~~~~~~~~~l 139 (144)
T PRK15359 82 GHALMLDASHPEPVYQTGVCLKMMGEPGLAREAFQTAIKMSYADASWSEIRQNAQIMV 139 (144)
T ss_pred HHHHhcCCCCcHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHH
Confidence 9999999999999999999999999999999999999999999999999888876543
No 71
>PRK10370 formate-dependent nitrite reductase complex subunit NrfG; Provisional
Probab=99.52 E-value=1.7e-12 Score=124.36 Aligned_cols=123 Identities=19% Similarity=0.228 Sum_probs=114.5
Q ss_pred CCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHH-HhCCC--hHHHHH
Q 006120 214 EGMVLSACEYYRESAILCPTHFRALKLLGSALFGVGEYRAAVKALEEAIFIKPDYADAHCDLASAL-HAMGE--DERAIE 290 (660)
Q Consensus 214 ~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~-~~~g~--~~~A~~ 290 (660)
.++.++++..++++++.+|++...|..+|.++...|++++|+..|++++++.|+++.++..+|.++ ...|+ +++|..
T Consensus 52 ~~~~~~~i~~l~~~L~~~P~~~~~w~~Lg~~~~~~g~~~~A~~a~~~Al~l~P~~~~~~~~lA~aL~~~~g~~~~~~A~~ 131 (198)
T PRK10370 52 QQTPEAQLQALQDKIRANPQNSEQWALLGEYYLWRNDYDNALLAYRQALQLRGENAELYAALATVLYYQAGQHMTPQTRE 131 (198)
T ss_pred chhHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCCCCcHHHHH
Confidence 677889999999999999999999999999999999999999999999999999999999999975 67777 599999
Q ss_pred HHHHHHHhCCCCHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHcccCCh
Q 006120 291 VFQKAIDLKPGHVDALYNLGGLYMDLGAGETEEAKKALKEALKMTNRV 338 (660)
Q Consensus 291 ~~~~al~~~p~~~~a~~~La~~~~~~~~g~~~eA~~~~~~al~l~p~~ 338 (660)
.++++++.+|+++.++..+|..+... |++++|+.++++++++.|..
T Consensus 132 ~l~~al~~dP~~~~al~~LA~~~~~~--g~~~~Ai~~~~~aL~l~~~~ 177 (198)
T PRK10370 132 MIDKALALDANEVTALMLLASDAFMQ--ADYAQAIELWQKVLDLNSPR 177 (198)
T ss_pred HHHHHHHhCCCChhHHHHHHHHHHHc--CCHHHHHHHHHHHHhhCCCC
Confidence 99999999999999999999999998 99999999999999998763
No 72
>KOG0548 consensus Molecular co-chaperone STI1 [Posttranslational modification, protein turnover, chaperones]
Probab=99.52 E-value=2.6e-12 Score=132.92 Aligned_cols=186 Identities=19% Similarity=0.224 Sum_probs=149.0
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhccCCCchhchHHHHHHH
Q 006120 127 GHMAIGRVLYEHQLFKEALVSFKRACELQPTDVRPHFRAGNCLYVLGRYREAKEEYLLALEAAETGGNQWAYLLPQIYVN 206 (660)
Q Consensus 127 ~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~ 206 (660)
+...+|..+...++++.|+.+|++++..... ..+.......++++...+...-++|. .+.--..
T Consensus 300 ~~~r~g~a~~k~~~~~~ai~~~~kaLte~Rt--------~~~ls~lk~~Ek~~k~~e~~a~~~pe--------~A~e~r~ 363 (539)
T KOG0548|consen 300 ALARLGNAYTKREDYEGAIKYYQKALTEHRT--------PDLLSKLKEAEKALKEAERKAYINPE--------KAEEERE 363 (539)
T ss_pred HHHHhhhhhhhHHhHHHHHHHHHHHhhhhcC--------HHHHHHHHHHHHHHHHHHHHHhhChh--------HHHHHHH
Confidence 3444555666666666666666665554433 44445555556666666665556665 4555666
Q ss_pred HHHHHHHCCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhCCChH
Q 006120 207 LGIALEGEGMVLSACEYYRESAILCPTHFRALKLLGSALFGVGEYRAAVKALEEAIFIKPDYADAHCDLASALHAMGEDE 286 (660)
Q Consensus 207 la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~ 286 (660)
-|..+...|+|..|+.+|.+++..+|+++..|.+.|.+|.++|.+..|+...+.+++++|+....|...|.++..+.+|+
T Consensus 364 kGne~Fk~gdy~~Av~~YteAIkr~P~Da~lYsNRAac~~kL~~~~~aL~Da~~~ieL~p~~~kgy~RKg~al~~mk~yd 443 (539)
T KOG0548|consen 364 KGNEAFKKGDYPEAVKHYTEAIKRDPEDARLYSNRAACYLKLGEYPEALKDAKKCIELDPNFIKAYLRKGAALRAMKEYD 443 (539)
T ss_pred HHHHHHhccCHHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHHHHH
Confidence 79999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCCCHHHHHHHHHH
Q 006120 287 RAIEVFQKAIDLKPGHVDALYNLGGLYMDLGAGETEEAKKALKE 330 (660)
Q Consensus 287 ~A~~~~~~al~~~p~~~~a~~~La~~~~~~~~g~~~eA~~~~~~ 330 (660)
+|++.|+++++++|++.++.-.+..++..+ .......+..++
T Consensus 444 kAleay~eale~dp~~~e~~~~~~rc~~a~--~~~~~~ee~~~r 485 (539)
T KOG0548|consen 444 KALEAYQEALELDPSNAEAIDGYRRCVEAQ--RGDETPEETKRR 485 (539)
T ss_pred HHHHHHHHHHhcCchhHHHHHHHHHHHHHh--hcCCCHHHHHHh
Confidence 999999999999999999999999988864 333334444444
No 73
>PF13844 Glyco_transf_41: Glycosyl transferase family 41; PDB: 3PE4_C 3PE3_D 3TAX_C 2XGO_A 2JLB_B 2XGM_A 2VSY_B 2XGS_B 2VSN_A.
Probab=99.51 E-value=2.6e-16 Score=165.52 Aligned_cols=120 Identities=15% Similarity=0.160 Sum_probs=86.9
Q ss_pred hhccCCCcchHHHHHHHHHHhhhhccCCCcccccchhhhhhhcccCCCCHHHHHHhhhhhhcccccCC-----CCccchh
Q 006120 446 FLHFLKPETFQGAVKAINERILSVLDETGSARVDLGMFYAILAPICSGSPEKRKRVAFDALLWRPVNE-----GSTQVRK 520 (660)
Q Consensus 446 ~iGY~S~df~~H~v~~l~~~~l~~hDr~g~~~fev~~y~~~~~~~~~~~~~~r~r~~~d~~~~~~~~~-----~~a~~i~ 520 (660)
||||||+||++|||++|+.++|++|||+ +|||++| +++|++++.++++++..+++|+ ++.. ..+++|+
T Consensus 2 RIGyvS~Df~~Hpv~~l~~~ll~~hDr~---rfev~~Y--s~~~~d~~~~~~~~~~~~~~~~--dl~~~~~~~~~A~~Ir 74 (468)
T PF13844_consen 2 RIGYVSSDFRNHPVGHLLQPLLENHDRS---RFEVFCY--SLGPDDGDTFRQRIRAEADHFV--DLSGLSDDAEAAQRIR 74 (468)
T ss_dssp EEEEEES-SSSSHHHHHHHHHHHHHHHH---TEEEEEE--ESS---SCHHHHHHHHHSEEEE--EEEE-TTSHHHHHHHH
T ss_pred EEEEECCcchhCHHHHHHHHHHHhcCcc---cEEEEEE--ECCCCCCcHHHHHHHHhCCeEE--ECccCCcHHHHHHHHH
Confidence 4999999999999999999999999999 9999999 8899888889999999999555 4332 2288999
Q ss_pred ccHHHHHHHhHHHhccCCCchhhhhhhcc-CCCcccchhHHhhhccCCCCcchhhhhh
Q 006120 521 VDAVRYIKLLRAVYIPSHGVSEMMEVHGE-ADSSMVSLSEFLVMFDDPDWGFGIMSTL 577 (660)
Q Consensus 521 ~D~~~~l~dL~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 577 (660)
+|.||||+||. |.|.|.+. ++.+- +.+++++|-+|.-.---|...|.|-...
T Consensus 75 ~D~IDILVDL~---GhT~~~R~--~ifA~RpAPVQvswlGyp~TtG~~~mDY~ItD~~ 127 (468)
T PF13844_consen 75 ADGIDILVDLS---GHTAGNRL--EIFALRPAPVQVSWLGYPGTTGLPAMDYIITDPV 127 (468)
T ss_dssp HTT-SEEEESS---TSSTSSSH--HHHHT-SSSEEEEESSSSS---STT--EEEEETT
T ss_pred HCCCCEEEeCC---CcCCCCHh--HHHhcCCcceEEEecCCCcccCCcccCEEEECCC
Confidence 99999999997 66666653 44332 5667777766665544455556555554
No 74
>COG5010 TadD Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking and secretion]
Probab=99.50 E-value=2.6e-12 Score=122.28 Aligned_cols=182 Identities=21% Similarity=0.201 Sum_probs=165.9
Q ss_pred HHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhccCCCchhchHHHHHHHHHHHHHHCCCHHHHH
Q 006120 142 KEALVSFKRACELQPTDVRPHFRAGNCLYVLGRYREAKEEYLLALEAAETGGNQWAYLLPQIYVNLGIALEGEGMVLSAC 221 (660)
Q Consensus 142 ~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~ 221 (660)
..+...+-+....+|++..+ .+++..+...|+-+.+..+..++....|. ...++..+|......|++.+|+
T Consensus 50 ~~a~~al~~~~~~~p~d~~i-~~~a~a~~~~G~a~~~l~~~~~~~~~~~~--------d~~ll~~~gk~~~~~g~~~~A~ 120 (257)
T COG5010 50 QGAAAALGAAVLRNPEDLSI-AKLATALYLRGDADSSLAVLQKSAIAYPK--------DRELLAAQGKNQIRNGNFGEAV 120 (257)
T ss_pred hHHHHHHHHHHhcCcchHHH-HHHHHHHHhcccccchHHHHhhhhccCcc--------cHHHHHHHHHHHHHhcchHHHH
Confidence 33666677777888999999 99999999999999999999998888887 6677777999999999999999
Q ss_pred HHHHHHHHhCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhCCChHHHHHHHHHHHHhCCC
Q 006120 222 EYYRESAILCPTHFRALKLLGSALFGVGEYRAAVKALEEAIFIKPDYADAHCDLASALHAMGEDERAIEVFQKAIDLKPG 301 (660)
Q Consensus 222 ~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~ 301 (660)
..++++..+.|++..+|..+|.+|.+.|++++|...|.+++++.|+.+.+..|+|..|.-.|+++.|..++.++...-+.
T Consensus 121 ~~~rkA~~l~p~d~~~~~~lgaaldq~Gr~~~Ar~ay~qAl~L~~~~p~~~nNlgms~~L~gd~~~A~~lll~a~l~~~a 200 (257)
T COG5010 121 SVLRKAARLAPTDWEAWNLLGAALDQLGRFDEARRAYRQALELAPNEPSIANNLGMSLLLRGDLEDAETLLLPAYLSPAA 200 (257)
T ss_pred HHHHHHhccCCCChhhhhHHHHHHHHccChhHHHHHHHHHHHhccCCchhhhhHHHHHHHcCCHHHHHHHHHHHHhCCCC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999998888
Q ss_pred CHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHcc
Q 006120 302 HVDALYNLGGLYMDLGAGETEEAKKALKEALKM 334 (660)
Q Consensus 302 ~~~a~~~La~~~~~~~~g~~~eA~~~~~~al~l 334 (660)
+..+..+|+.+...+ |++++|.....+-+..
T Consensus 201 d~~v~~NLAl~~~~~--g~~~~A~~i~~~e~~~ 231 (257)
T COG5010 201 DSRVRQNLALVVGLQ--GDFREAEDIAVQELLS 231 (257)
T ss_pred chHHHHHHHHHHhhc--CChHHHHhhccccccc
Confidence 999999999999988 9999998876654443
No 75
>KOG1130 consensus Predicted G-alpha GTPase interaction protein, contains GoLoco domain [Signal transduction mechanisms]
Probab=99.50 E-value=2.1e-13 Score=135.68 Aligned_cols=275 Identities=19% Similarity=0.198 Sum_probs=211.5
Q ss_pred hHHHHhccCchhhHHHHHHHHHHHHhhccCCcCCchHHhhhHHHHHHhCCchHHHHhHHHHHHHHHHHHHHHHHHHHHHH
Q 006120 34 GIVFDDTWKIVDDLEILVKRLKAKQAKDGKLKGDNSDAFSDAGWSRELGTSAEISEKRVFWEESTHDYAVFVKELGVLRN 113 (660)
Q Consensus 34 g~~y~~~~~~~~al~~~~~~~~~a~~~~~~l~~~~~~a~~~~~~~~~l~~~~~~~~~~~~l~~~~~~~g~~~~Al~~l~~ 113 (660)
|--..++|+...-+..++.+++. +.........++..+|.++..+++|.+|+++-.-
T Consensus 24 GERLck~gdcraGv~ff~aA~qv-----------------------GTeDl~tLSAIYsQLGNAyfyL~DY~kAl~yH~h 80 (639)
T KOG1130|consen 24 GERLCKMGDCRAGVDFFKAALQV-----------------------GTEDLSTLSAIYSQLGNAYFYLKDYEKALKYHTH 80 (639)
T ss_pred HHHHHhccchhhhHHHHHHHHHh-----------------------cchHHHHHHHHHHHhcchhhhHhhHHHHHhhhhh
Confidence 33345555666666666666662 2222233445667778999999999999998765
Q ss_pred HHhhc---cCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC------CHHHHHHHHHHHHHcCC----------
Q 006120 114 RADGA---RSREEAFDGHMAIGRVLYEHQLFKEALVSFKRACELQPT------DVRPHFRAGNCLYVLGR---------- 174 (660)
Q Consensus 114 a~~~~---~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~------~~~~~~~la~~~~~~g~---------- 174 (660)
-+... .+....+.+--++|.++...|.|++|+.+..+-+.+... ...+++++|++|...|+
T Consensus 81 Dltlar~lgdklGEAKssgNLGNtlKv~G~fdeA~~cc~rhLd~areLgDrv~e~RAlYNlgnvYhakGk~~g~~~pee~ 160 (639)
T KOG1130|consen 81 DLTLARLLGDKLGEAKSSGNLGNTLKVKGAFDEALTCCFRHLDFARELGDRVLESRALYNLGNVYHAKGKCTGLEAPEEK 160 (639)
T ss_pred hHHHHHHhcchhccccccccccchhhhhcccchHHHHHHHHhHHHHHHhHHHhhhHHHhhhhhhhhhcccccCCCChhhc
Confidence 44332 344444566778999999999999999999988876432 46799999999988775
Q ss_pred ----------HHHHHHHHHHHHHHhccCCCchhchHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCc------HHHH
Q 006120 175 ----------YREAKEEYLLALEAAETGGNQWAYLLPQIYVNLGIALEGEGMVLSACEYYRESAILCPTH------FRAL 238 (660)
Q Consensus 175 ----------~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~------~~~~ 238 (660)
++.|.++|..-+++....++... ...++-+||..|+-+|+|+.|+..-+.-+.+.... -.++
T Consensus 161 g~f~~ev~~al~~Av~fy~eNL~l~~~lgDr~a--qGRa~GnLGNTyYlLGdf~~ai~~H~~RL~ia~efGDrAaeRRA~ 238 (639)
T KOG1130|consen 161 GAFNAEVTSALENAVKFYMENLELSEKLGDRLA--QGRAYGNLGNTYYLLGDFDQAIHFHKLRLEIAQEFGDRAAERRAH 238 (639)
T ss_pred ccccHHHHHHHHHHHHHHHHHHHHHHHhhhHHh--hcchhcccCceeeeeccHHHHHHHHHHHHHHHHHhhhHHHHHHhh
Confidence 45566677776777666555444 66789999999999999999999988877765433 4589
Q ss_pred HHHHHHHHHCCCHHHHHHHHHHHHHhC----CC--CHHHHHHHHHHHHhCCChHHHHHHHHHHHHhC------CCCHHHH
Q 006120 239 KLLGSALFGVGEYRAAVKALEEAIFIK----PD--YADAHCDLASALHAMGEDERAIEVFQKAIDLK------PGHVDAL 306 (660)
Q Consensus 239 ~~lg~~~~~~g~~~~A~~~~~~al~~~----p~--~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~------p~~~~a~ 306 (660)
.++|+++.-.|+++.|+++|++.+.+. .. .+...+.||..|....++++|+.+.++-+.+. .....++
T Consensus 239 sNlgN~hiflg~fe~A~ehYK~tl~LAielg~r~vEAQscYSLgNtytll~e~~kAI~Yh~rHLaIAqeL~DriGe~Rac 318 (639)
T KOG1130|consen 239 SNLGNCHIFLGNFELAIEHYKLTLNLAIELGNRTVEAQSCYSLGNTYTLLKEVQKAITYHQRHLAIAQELEDRIGELRAC 318 (639)
T ss_pred cccchhhhhhcccHhHHHHHHHHHHHHHHhcchhHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHH
Confidence 999999999999999999999987663 22 25667899999999999999999999877764 2346689
Q ss_pred HHHHHHHHHhcCCCHHHHHHHHHHHHccc
Q 006120 307 YNLGGLYMDLGAGETEEAKKALKEALKMT 335 (660)
Q Consensus 307 ~~La~~~~~~~~g~~~eA~~~~~~al~l~ 335 (660)
+.||.++..+ |..++|+.+.++.+++.
T Consensus 319 wSLgna~~al--g~h~kAl~fae~hl~~s 345 (639)
T KOG1130|consen 319 WSLGNAFNAL--GEHRKALYFAELHLRSS 345 (639)
T ss_pred HHHHHHHHhh--hhHHHHHHHHHHHHHHH
Confidence 9999999999 99999999998888765
No 76
>cd05804 StaR_like StaR_like; a well-conserved protein found in bacteria, plants, and animals. A family member from Streptomyces toyocaensis, StaR is part of a gene cluster involved in the biosynthesis of glycopeptide antibiotics (GPAs), specifically A47934. It has been speculated that StaR could be a flavoprotein hydroxylating a tyrosine sidechain. Some family members have been annotated as proteins containing tetratricopeptide (TPR) repeats, which may at least indicate mostly alpha-helical secondary structure.
Probab=99.49 E-value=3.8e-12 Score=134.78 Aligned_cols=204 Identities=18% Similarity=0.099 Sum_probs=162.2
Q ss_pred HHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC---HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhccCCCchhc
Q 006120 122 EEAFDGHMAIGRVLYEHQLFKEALVSFKRACELQPTD---VRPHFRAGNCLYVLGRYREAKEEYLLALEAAETGGNQWAY 198 (660)
Q Consensus 122 ~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~---~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~ 198 (660)
|+...++..+|..+...|+.+.|...+.++.+..|.+ .+.....+.++...|++++|...++++++..|.
T Consensus 3 p~~~~a~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~a~~~~~~g~~~~A~~~~~~~l~~~P~------- 75 (355)
T cd05804 3 PDFALGHAAAALLLLLGGERPAAAAKAAAAAQALAARATERERAHVEALSAWIAGDLPKALALLEQLLDDYPR------- 75 (355)
T ss_pred CccHHHHHHHHHHHHhcCCcchHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCC-------
Confidence 3445788889999999999999888888888877644 456777788999999999999999999999887
Q ss_pred hHHHHHHHHHHHHHHC----CCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHH
Q 006120 199 LLPQIYVNLGIALEGE----GMVLSACEYYRESAILCPTHFRALKLLGSALFGVGEYRAAVKALEEAIFIKPDYADAHCD 274 (660)
Q Consensus 199 ~~~~~~~~la~~~~~~----g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~ 274 (660)
...++.. +..+... +....+...+.......|.....+..+|.++..+|++++|+..+++++++.|+++.++..
T Consensus 76 -~~~a~~~-~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~a~~~~~~G~~~~A~~~~~~al~~~p~~~~~~~~ 153 (355)
T cd05804 76 -DLLALKL-HLGAFGLGDFSGMRDHVARVLPLWAPENPDYWYLLGMLAFGLEEAGQYDRAEEAARRALELNPDDAWAVHA 153 (355)
T ss_pred -cHHHHHH-hHHHHHhcccccCchhHHHHHhccCcCCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCcHHHHH
Confidence 4444443 3344333 444444444444334567777788888999999999999999999999999999999999
Q ss_pred HHHHHHhCCChHHHHHHHHHHHHhCCCCH----HHHHHHHHHHHHhcCCCHHHHHHHHHHHHcccC
Q 006120 275 LASALHAMGEDERAIEVFQKAIDLKPGHV----DALYNLGGLYMDLGAGETEEAKKALKEALKMTN 336 (660)
Q Consensus 275 la~~~~~~g~~~~A~~~~~~al~~~p~~~----~a~~~La~~~~~~~~g~~~eA~~~~~~al~l~p 336 (660)
+|.++...|++++|+.++++++...|..+ ..+..++.++... |++++|+..|++++...|
T Consensus 154 la~i~~~~g~~~eA~~~l~~~l~~~~~~~~~~~~~~~~la~~~~~~--G~~~~A~~~~~~~~~~~~ 217 (355)
T cd05804 154 VAHVLEMQGRFKEGIAFMESWRDTWDCSSMLRGHNWWHLALFYLER--GDYEAALAIYDTHIAPSA 217 (355)
T ss_pred HHHHHHHcCCHHHHHHHHHhhhhccCCCcchhHHHHHHHHHHHHHC--CCHHHHHHHHHHHhcccc
Confidence 99999999999999999999999876432 3566789999988 999999999999977665
No 77
>PRK14574 hmsH outer membrane protein; Provisional
Probab=99.49 E-value=5.2e-12 Score=144.18 Aligned_cols=199 Identities=15% Similarity=-0.004 Sum_probs=173.6
Q ss_pred HHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhccCCCchhchHH
Q 006120 122 EEAFDGHMAIGRVLYEHQLFKEALVSFKRACELQPTDVRPHFRAGNCLYVLGRYREAKEEYLLALEAAETGGNQWAYLLP 201 (660)
Q Consensus 122 ~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~ 201 (660)
+..+...+..+.+..++|+++.|+..|+++++.+|.++.....++.++...|+.++|+.++++++ .|.+. ..
T Consensus 31 p~~~~~~y~~aii~~r~Gd~~~Al~~L~qaL~~~P~~~~av~dll~l~~~~G~~~~A~~~~eka~--~p~n~------~~ 102 (822)
T PRK14574 31 PAMADTQYDSLIIRARAGDTAPVLDYLQEESKAGPLQSGQVDDWLQIAGWAGRDQEVIDVYERYQ--SSMNI------SS 102 (822)
T ss_pred ccchhHHHHHHHHHHhCCCHHHHHHHHHHHHhhCccchhhHHHHHHHHHHcCCcHHHHHHHHHhc--cCCCC------CH
Confidence 33457889999999999999999999999999999986554488888999999999999999999 44321 45
Q ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHh
Q 006120 202 QIYVNLGIALEGEGMVLSACEYYRESAILCPTHFRALKLLGSALFGVGEYRAAVKALEEAIFIKPDYADAHCDLASALHA 281 (660)
Q Consensus 202 ~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~ 281 (660)
.....+|.++..+|++++|++.|+++++.+|+++.++..++.++...++.++|+..+++++..+|.+... ..++.++..
T Consensus 103 ~~llalA~ly~~~gdyd~Aiely~kaL~~dP~n~~~l~gLa~~y~~~~q~~eAl~~l~~l~~~dp~~~~~-l~layL~~~ 181 (822)
T PRK14574 103 RGLASAARAYRNEKRWDQALALWQSSLKKDPTNPDLISGMIMTQADAGRGGVVLKQATELAERDPTVQNY-MTLSYLNRA 181 (822)
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHhhcCCHHHHHHHHHHhcccCcchHHH-HHHHHHHHh
Confidence 6666678899999999999999999999999999999999999999999999999999999999985554 666677767
Q ss_pred CCChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCCCHHHHHHHHHHH
Q 006120 282 MGEDERAIEVFQKAIDLKPGHVDALYNLGGLYMDLGAGETEEAKKALKEA 331 (660)
Q Consensus 282 ~g~~~~A~~~~~~al~~~p~~~~a~~~La~~~~~~~~g~~~eA~~~~~~a 331 (660)
.++..+|+..++++++.+|++.+++..+..++... |-...|.+..++-
T Consensus 182 ~~~~~~AL~~~ekll~~~P~n~e~~~~~~~~l~~~--~~~~~a~~l~~~~ 229 (822)
T PRK14574 182 TDRNYDALQASSEAVRLAPTSEEVLKNHLEILQRN--RIVEPALRLAKEN 229 (822)
T ss_pred cchHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHc--CCcHHHHHHHHhC
Confidence 88887899999999999999999999999999988 8888888776653
No 78
>KOG4162 consensus Predicted calmodulin-binding protein [Signal transduction mechanisms]
Probab=99.47 E-value=9.5e-12 Score=133.43 Aligned_cols=250 Identities=18% Similarity=0.200 Sum_probs=199.6
Q ss_pred hhcCCcchhhccCchHHHHhccCchhhHHHHHHHHHHHHhhccCCcCCchHHhhhHHHHHHhCCchHHHHhHHHHHHHHH
Q 006120 20 KKQRTAAWAVSPNHGIVFDDTWKIVDDLEILVKRLKAKQAKDGKLKGDNSDAFSDAGWSRELGTSAEISEKRVFWEESTH 99 (660)
Q Consensus 20 ~~~~p~~~~~~~~lg~~y~~~~~~~~al~~~~~~~~~a~~~~~~l~~~~~~a~~~~~~~~~l~~~~~~~~~~~~l~~~~~ 99 (660)
.+-+|++..+.+++++.|+...++..|+++..++++- ...+....+..++.+..
T Consensus 471 v~~d~~dp~~if~lalq~A~~R~l~sAl~~~~eaL~l--------------------------~~~~~~~~whLLALvlS 524 (799)
T KOG4162|consen 471 VQFDPTDPLVIFYLALQYAEQRQLTSALDYAREALAL--------------------------NRGDSAKAWHLLALVLS 524 (799)
T ss_pred HhcCCCCchHHHHHHHHHHHHHhHHHHHHHHHHHHHh--------------------------cCCccHHHHHHHHHHHh
Confidence 3448888899999999999999999999999998882 11223455666777888
Q ss_pred HHHHHHHHHHHHHHHHhhccCcHHHHHH----------------------------------------HHHHHHHHHHcC
Q 006120 100 DYAVFVKELGVLRNRADGARSREEAFDG----------------------------------------HMAIGRVLYEHQ 139 (660)
Q Consensus 100 ~~g~~~~Al~~l~~a~~~~~~~~~~~~~----------------------------------------~~~lg~~~~~~g 139 (660)
.++++..|+.....++...+.+-..... .-..+.......
T Consensus 525 a~kr~~~Al~vvd~al~E~~~N~~l~~~~~~i~~~~~~~e~~l~t~~~~L~~we~~~~~q~~~~~g~~~~lk~~l~la~~ 604 (799)
T KOG4162|consen 525 AQKRLKEALDVVDAALEEFGDNHVLMDGKIHIELTFNDREEALDTCIHKLALWEAEYGVQQTLDEGKLLRLKAGLHLALS 604 (799)
T ss_pred hhhhhHHHHHHHHHHHHHhhhhhhhchhhhhhhhhcccHHHHHHHHHHHHHHHHhhhhHhhhhhhhhhhhhhcccccCcc
Confidence 8889999999888888877653211100 001111112223
Q ss_pred CHHHHHHHHHHHHHhC-------------C--------CC-----HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhccCC
Q 006120 140 LFKEALVSFKRACELQ-------------P--------TD-----VRPHFRAGNCLYVLGRYREAKEEYLLALEAAETGG 193 (660)
Q Consensus 140 ~~~~A~~~~~~al~~~-------------p--------~~-----~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~ 193 (660)
+..+|+..++++...- | .. ...|...+..+...++.++|..++.++-.+.|.
T Consensus 605 q~~~a~s~sr~ls~l~a~~~~~~~se~~Lp~s~~~~~~~~~~~~~~~lwllaa~~~~~~~~~~~a~~CL~Ea~~~~~l-- 682 (799)
T KOG4162|consen 605 QPTDAISTSRYLSSLVASQLKSAGSELKLPSSTVLPGPDSLWYLLQKLWLLAADLFLLSGNDDEARSCLLEASKIDPL-- 682 (799)
T ss_pred cccccchhhHHHHHHHHhhhhhcccccccCcccccCCCCchHHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHhcchh--
Confidence 4444444444443320 1 11 245678888999999999999999999999988
Q ss_pred CchhchHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHCCCHHHHHH--HHHHHHHhCCCCHHH
Q 006120 194 NQWAYLLPQIYVNLGIALEGEGMVLSACEYYRESAILCPTHFRALKLLGSALFGVGEYRAAVK--ALEEAIFIKPDYADA 271 (660)
Q Consensus 194 ~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~--~~~~al~~~p~~~~~ 271 (660)
.+..|+..|..+...|++.+|.+.|..++.++|+++.....+|.++.+.|+..-|.. .+..+++++|.++++
T Consensus 683 ------~~~~~~~~G~~~~~~~~~~EA~~af~~Al~ldP~hv~s~~Ala~~lle~G~~~la~~~~~L~dalr~dp~n~ea 756 (799)
T KOG4162|consen 683 ------SASVYYLRGLLLEVKGQLEEAKEAFLVALALDPDHVPSMTALAELLLELGSPRLAEKRSLLSDALRLDPLNHEA 756 (799)
T ss_pred ------hHHHHHHhhHHHHHHHhhHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHhCCcchHHHHHHHHHHHhhCCCCHHH
Confidence 899999999999999999999999999999999999999999999999999888888 999999999999999
Q ss_pred HHHHHHHHHhCCChHHHHHHHHHHHHhCCCCH
Q 006120 272 HCDLASALHAMGEDERAIEVFQKAIDLKPGHV 303 (660)
Q Consensus 272 ~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~ 303 (660)
|+.+|.++..+|+.++|.++|+.++++.+.+|
T Consensus 757 W~~LG~v~k~~Gd~~~Aaecf~aa~qLe~S~P 788 (799)
T KOG4162|consen 757 WYYLGEVFKKLGDSKQAAECFQAALQLEESNP 788 (799)
T ss_pred HHHHHHHHHHccchHHHHHHHHHHHhhccCCC
Confidence 99999999999999999999999999987765
No 79
>cd05804 StaR_like StaR_like; a well-conserved protein found in bacteria, plants, and animals. A family member from Streptomyces toyocaensis, StaR is part of a gene cluster involved in the biosynthesis of glycopeptide antibiotics (GPAs), specifically A47934. It has been speculated that StaR could be a flavoprotein hydroxylating a tyrosine sidechain. Some family members have been annotated as proteins containing tetratricopeptide (TPR) repeats, which may at least indicate mostly alpha-helical secondary structure.
Probab=99.47 E-value=6.5e-12 Score=133.04 Aligned_cols=210 Identities=13% Similarity=0.029 Sum_probs=169.9
Q ss_pred hHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHhhccCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHH
Q 006120 85 AEISEKRVFWEESTHDYAVFVKELGVLRNRADGARSREEAFDGHMAIGRVLYEHQLFKEALVSFKRACELQPTDVRPHFR 164 (660)
Q Consensus 85 ~~~~~~~~~l~~~~~~~g~~~~Al~~l~~a~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~ 164 (660)
|+....+..++..+...++...+...+.+.....+......+..+..|..+...|++++|...++++++.+|++..++..
T Consensus 3 p~~~~a~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~a~~~~~~g~~~~A~~~~~~~l~~~P~~~~a~~~ 82 (355)
T cd05804 3 PDFALGHAAAALLLLLGGERPAAAAKAAAAAQALAARATERERAHVEALSAWIAGDLPKALALLEQLLDDYPRDLLALKL 82 (355)
T ss_pred CccHHHHHHHHHHHHhcCCcchHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCcHHHHHH
Confidence 33445555666667777778888888888777777555556778889999999999999999999999999999877775
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHHHh-ccCCCchhchHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCcHHHHHHHHH
Q 006120 165 AGNCLYVLGRYREAKEEYLLALEAA-ETGGNQWAYLLPQIYVNLGIALEGEGMVLSACEYYRESAILCPTHFRALKLLGS 243 (660)
Q Consensus 165 la~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~ 243 (660)
+..+...|++..+.....+++... +..+. ....+..+|.++..+|++++|+..++++++++|+++.++..+|.
T Consensus 83 -~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~-----~~~~~~~~a~~~~~~G~~~~A~~~~~~al~~~p~~~~~~~~la~ 156 (355)
T cd05804 83 -HLGAFGLGDFSGMRDHVARVLPLWAPENPD-----YWYLLGMLAFGLEEAGQYDRAEEAARRALELNPDDAWAVHAVAH 156 (355)
T ss_pred -hHHHHHhcccccCchhHHHHHhccCcCCCC-----cHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCcHHHHHHHH
Confidence 666666665555555555555421 11111 56777889999999999999999999999999999999999999
Q ss_pred HHHHCCCHHHHHHHHHHHHHhCCCCH----HHHHHHHHHHHhCCChHHHHHHHHHHHHhCC
Q 006120 244 ALFGVGEYRAAVKALEEAIFIKPDYA----DAHCDLASALHAMGEDERAIEVFQKAIDLKP 300 (660)
Q Consensus 244 ~~~~~g~~~~A~~~~~~al~~~p~~~----~~~~~la~~~~~~g~~~~A~~~~~~al~~~p 300 (660)
++...|++++|+.++++++...|..+ ..|..+|.++..+|++++|+..+++++...|
T Consensus 157 i~~~~g~~~eA~~~l~~~l~~~~~~~~~~~~~~~~la~~~~~~G~~~~A~~~~~~~~~~~~ 217 (355)
T cd05804 157 VLEMQGRFKEGIAFMESWRDTWDCSSMLRGHNWWHLALFYLERGDYEAALAIYDTHIAPSA 217 (355)
T ss_pred HHHHcCCHHHHHHHHHhhhhccCCCcchhHHHHHHHHHHHHHCCCHHHHHHHHHHHhcccc
Confidence 99999999999999999999987432 3566899999999999999999999987766
No 80
>PRK10370 formate-dependent nitrite reductase complex subunit NrfG; Provisional
Probab=99.46 E-value=4.7e-12 Score=121.38 Aligned_cols=124 Identities=19% Similarity=0.161 Sum_probs=92.2
Q ss_pred cCCHHHHHHHHHHHHHHhccCCCchhchHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHH-HHCCC
Q 006120 172 LGRYREAKEEYLLALEAAETGGNQWAYLLPQIYVNLGIALEGEGMVLSACEYYRESAILCPTHFRALKLLGSAL-FGVGE 250 (660)
Q Consensus 172 ~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~-~~~g~ 250 (660)
.++.++++..++++++.+|+ ....|..+|.++...|++++|+..|++++++.|+++.++..+|.++ ...|+
T Consensus 52 ~~~~~~~i~~l~~~L~~~P~--------~~~~w~~Lg~~~~~~g~~~~A~~a~~~Al~l~P~~~~~~~~lA~aL~~~~g~ 123 (198)
T PRK10370 52 QQTPEAQLQALQDKIRANPQ--------NSEQWALLGEYYLWRNDYDNALLAYRQALQLRGENAELYAALATVLYYQAGQ 123 (198)
T ss_pred chhHHHHHHHHHHHHHHCCC--------CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCC
Confidence 55667777777777777777 6677777777777777777777777777777777777777777754 55565
Q ss_pred --HHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhCCChHHHHHHHHHHHHhCCCCH
Q 006120 251 --YRAAVKALEEAIFIKPDYADAHCDLASALHAMGEDERAIEVFQKAIDLKPGHV 303 (660)
Q Consensus 251 --~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~ 303 (660)
+++|...++++++.+|+++.++.++|.++...|++++|+.++++++++.|.+.
T Consensus 124 ~~~~~A~~~l~~al~~dP~~~~al~~LA~~~~~~g~~~~Ai~~~~~aL~l~~~~~ 178 (198)
T PRK10370 124 HMTPQTREMIDKALALDANEVTALMLLASDAFMQADYAQAIELWQKVLDLNSPRV 178 (198)
T ss_pred CCcHHHHHHHHHHHHhCCCChhHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCc
Confidence 47777777777777777777777777777777777777777777777776543
No 81
>PRK15179 Vi polysaccharide biosynthesis protein TviE; Provisional
Probab=99.46 E-value=4.3e-12 Score=142.28 Aligned_cols=165 Identities=12% Similarity=0.011 Sum_probs=96.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhccCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCH
Q 006120 96 ESTHDYAVFVKELGVLRNRADGARSREEAFDGHMAIGRVLYEHQLFKEALVSFKRACELQPTDVRPHFRAGNCLYVLGRY 175 (660)
Q Consensus 96 ~~~~~~g~~~~Al~~l~~a~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~ 175 (660)
++....+...++...+-++.....+.+...+++.++|.+....|.+++|+..++.+++..|++..++..++.++.+.+++
T Consensus 57 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~La~i~~~~g~~~ea~~~l~~~~~~~Pd~~~a~~~~a~~L~~~~~~ 136 (694)
T PRK15179 57 QVLERHAAVHKPAAALPELLDYVRRYPHTELFQVLVARALEAAHRSDEGLAVWRGIHQRFPDSSEAFILMLRGVKRQQGI 136 (694)
T ss_pred HHHHHhhhhcchHhhHHHHHHHHHhccccHHHHHHHHHHHHHcCCcHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHhccH
Confidence 34444444555555555554444444444556666666666666666666666666666666666666666666666666
Q ss_pred HHHHHHHHHHHHHhccCCCchhchHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHCCCHHHHH
Q 006120 176 REAKEEYLLALEAAETGGNQWAYLLPQIYVNLGIALEGEGMVLSACEYYRESAILCPTHFRALKLLGSALFGVGEYRAAV 255 (660)
Q Consensus 176 ~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~ 255 (660)
++|+..+++++...|+ .+..++.+|.++.++|++++|+.+|++++..+|+++.++..+|.++...|+.++|.
T Consensus 137 eeA~~~~~~~l~~~p~--------~~~~~~~~a~~l~~~g~~~~A~~~y~~~~~~~p~~~~~~~~~a~~l~~~G~~~~A~ 208 (694)
T PRK15179 137 EAGRAEIELYFSGGSS--------SAREILLEAKSWDEIGQSEQADACFERLSRQHPEFENGYVGWAQSLTRRGALWRAR 208 (694)
T ss_pred HHHHHHHHHHhhcCCC--------CHHHHHHHHHHHHHhcchHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCCHHHHH
Confidence 6666666666666665 55556666666666666666666666666655555666666666666666666666
Q ss_pred HHHHHHHHhCCCC
Q 006120 256 KALEEAIFIKPDY 268 (660)
Q Consensus 256 ~~~~~al~~~p~~ 268 (660)
..|+++++...+-
T Consensus 209 ~~~~~a~~~~~~~ 221 (694)
T PRK15179 209 DVLQAGLDAIGDG 221 (694)
T ss_pred HHHHHHHHhhCcc
Confidence 6666666554433
No 82
>PRK15179 Vi polysaccharide biosynthesis protein TviE; Provisional
Probab=99.45 E-value=7.7e-12 Score=140.28 Aligned_cols=154 Identities=12% Similarity=0.039 Sum_probs=142.3
Q ss_pred HHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhccCCCchhchHHHHHHHHHHHHHHCCCHHHHHHHHHH
Q 006120 147 SFKRACELQPTDVRPHFRAGNCLYVLGRYREAKEEYLLALEAAETGGNQWAYLLPQIYVNLGIALEGEGMVLSACEYYRE 226 (660)
Q Consensus 147 ~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~ 226 (660)
-........|.+++++.+||.+....|.+++|...++.++++.|+ ...+..+++.++.+++++++|+..+++
T Consensus 74 ~~~~~~~~~~~~~~~~~~La~i~~~~g~~~ea~~~l~~~~~~~Pd--------~~~a~~~~a~~L~~~~~~eeA~~~~~~ 145 (694)
T PRK15179 74 ELLDYVRRYPHTELFQVLVARALEAAHRSDEGLAVWRGIHQRFPD--------SSEAFILMLRGVKRQQGIEAGRAEIEL 145 (694)
T ss_pred HHHHHHHhccccHHHHHHHHHHHHHcCCcHHHHHHHHHHHhhCCC--------cHHHHHHHHHHHHHhccHHHHHHHHHH
Confidence 333344457889999999999999999999999999999999999 899999999999999999999999999
Q ss_pred HHHhCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhCCChHHHHHHHHHHHHhCCCCHHHH
Q 006120 227 SAILCPTHFRALKLLGSALFGVGEYRAAVKALEEAIFIKPDYADAHCDLASALHAMGEDERAIEVFQKAIDLKPGHVDAL 306 (660)
Q Consensus 227 al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~a~ 306 (660)
++..+|+++.+++.+|.++.+.|++++|+..|++++..+|+++.++..+|.++...|+.++|...|+++++...+-...+
T Consensus 146 ~l~~~p~~~~~~~~~a~~l~~~g~~~~A~~~y~~~~~~~p~~~~~~~~~a~~l~~~G~~~~A~~~~~~a~~~~~~~~~~~ 225 (694)
T PRK15179 146 YFSGGSSSAREILLEAKSWDEIGQSEQADACFERLSRQHPEFENGYVGWAQSLTRRGALWRARDVLQAGLDAIGDGARKL 225 (694)
T ss_pred HhhcCCCCHHHHHHHHHHHHHhcchHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhCcchHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999876655554
Q ss_pred HH
Q 006120 307 YN 308 (660)
Q Consensus 307 ~~ 308 (660)
.+
T Consensus 226 ~~ 227 (694)
T PRK15179 226 TR 227 (694)
T ss_pred HH
Confidence 33
No 83
>PLN03218 maturation of RBCL 1; Provisional
Probab=99.45 E-value=1.7e-10 Score=135.51 Aligned_cols=293 Identities=12% Similarity=-0.010 Sum_probs=189.5
Q ss_pred CcchhhccCchHHHHhccCchhhHHHHHHHHHHHHhhccCCcCCchHHhhhHHHH-----------------HHhCCchH
Q 006120 24 TAAWAVSPNHGIVFDDTWKIVDDLEILVKRLKAKQAKDGKLKGDNSDAFSDAGWS-----------------RELGTSAE 86 (660)
Q Consensus 24 p~~~~~~~~lg~~y~~~~~~~~al~~~~~~~~~a~~~~~~l~~~~~~a~~~~~~~-----------------~~l~~~~~ 86 (660)
..+..+|..+-..|.+.|++.++.+.+.+..+..+ .++ ...|..+... ...+..|.
T Consensus 469 ~pD~~tynsLI~~y~k~G~vd~A~~vf~eM~~~Gv------~Pd-vvTynaLI~gy~k~G~~eeAl~lf~~M~~~Gv~PD 541 (1060)
T PLN03218 469 KADCKLYTTLISTCAKSGKVDAMFEVFHEMVNAGV------EAN-VHTFGALIDGCARAGQVAKAFGAYGIMRSKNVKPD 541 (1060)
T ss_pred CCCHHHHHHHHHHHHhCcCHHHHHHHHHHHHHcCC------CCC-HHHHHHHHHHHHHCcCHHHHHHHHHHHHHcCCCCC
Confidence 45566777888888888888888888777665211 111 1111111111 11111111
Q ss_pred HHHhHHHHHHHHHHHHHHHHHHHHHHHHHhhc-cCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHH
Q 006120 87 ISEKRVFWEESTHDYAVFVKELGVLRNRADGA-RSREEAFDGHMAIGRVLYEHQLFKEALVSFKRACELQ-PTDVRPHFR 164 (660)
Q Consensus 87 ~~~~~~~l~~~~~~~g~~~~Al~~l~~a~~~~-~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~ 164 (660)
...+..+...+...|++++|.+.+.+..... .-.+. ...+..+...|.+.|++++|.+.|+++.+.. +.+...|..
T Consensus 542 -~vTYnsLI~a~~k~G~~deA~~lf~eM~~~~~gi~PD-~vTynaLI~ay~k~G~ldeA~elf~~M~e~gi~p~~~tyns 619 (1060)
T PLN03218 542 -RVVFNALISACGQSGAVDRAFDVLAEMKAETHPIDPD-HITVGALMKACANAGQVDRAKEVYQMIHEYNIKGTPEVYTI 619 (1060)
T ss_pred -HHHHHHHHHHHHHCCCHHHHHHHHHHHHHhcCCCCCc-HHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCChHHHHH
Confidence 2334444556667777777777777765431 11111 2456667777777788888888877777765 345667777
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHHHhccCCCchhchHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCcHHHHHHHHH
Q 006120 165 AGNCLYVLGRYREAKEEYLLALEAAETGGNQWAYLLPQIYVNLGIALEGEGMVLSACEYYRESAILC-PTHFRALKLLGS 243 (660)
Q Consensus 165 la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~ 243 (660)
+...|.+.|++++|...|.+..+..-.. ...+|..+...+.+.|++++|.++++++.+.. +.+...+..+..
T Consensus 620 LI~ay~k~G~~deAl~lf~eM~~~Gv~P-------D~~TynsLI~a~~k~G~~eeA~~l~~eM~k~G~~pd~~tynsLI~ 692 (1060)
T PLN03218 620 AVNSCSQKGDWDFALSIYDDMKKKGVKP-------DEVFFSALVDVAGHAGDLDKAFEILQDARKQGIKLGTVSYSSLMG 692 (1060)
T ss_pred HHHHHHhcCCHHHHHHHHHHHHHcCCCC-------CHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHH
Confidence 7777777888888888777777653211 34566777777777888888888887777653 334667777777
Q ss_pred HHHHCCCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHhCCChHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhcCCC
Q 006120 244 ALFGVGEYRAAVKALEEAIFI--KPDYADAHCDLASALHAMGEDERAIEVFQKAIDLK-PGHVDALYNLGGLYMDLGAGE 320 (660)
Q Consensus 244 ~~~~~g~~~~A~~~~~~al~~--~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~-p~~~~a~~~La~~~~~~~~g~ 320 (660)
.|.+.|++++|+..|++.... .| +...|..+...|.+.|++++|+..|+++.... .-+...|..+...+... |+
T Consensus 693 ay~k~G~~eeA~~lf~eM~~~g~~P-dvvtyN~LI~gy~k~G~~eeAlelf~eM~~~Gi~Pd~~Ty~sLL~a~~k~--G~ 769 (1060)
T PLN03218 693 ACSNAKNWKKALELYEDIKSIKLRP-TVSTMNALITALCEGNQLPKALEVLSEMKRLGLCPNTITYSILLVASERK--DD 769 (1060)
T ss_pred HHHhCCCHHHHHHHHHHHHHcCCCC-CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHC--CC
Confidence 888888888888888776553 33 45677777778888888888888887766542 22355666666777776 78
Q ss_pred HHHHHHHHHHHHccc
Q 006120 321 TEEAKKALKEALKMT 335 (660)
Q Consensus 321 ~~eA~~~~~~al~l~ 335 (660)
+++|...+.++++..
T Consensus 770 le~A~~l~~~M~k~G 784 (1060)
T PLN03218 770 ADVGLDLLSQAKEDG 784 (1060)
T ss_pred HHHHHHHHHHHHHcC
Confidence 888888888777654
No 84
>KOG1130 consensus Predicted G-alpha GTPase interaction protein, contains GoLoco domain [Signal transduction mechanisms]
Probab=99.44 E-value=1.4e-12 Score=129.92 Aligned_cols=239 Identities=20% Similarity=0.250 Sum_probs=191.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhccCc-HHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh------CCCCHHHHHHHHH
Q 006120 95 EESTHDYAVFVKELGVLRNRADGARSR-EEAFDGHMAIGRVLYEHQLFKEALVSFKRACEL------QPTDVRPHFRAGN 167 (660)
Q Consensus 95 ~~~~~~~g~~~~Al~~l~~a~~~~~~~-~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~------~p~~~~~~~~la~ 167 (660)
|+-+...|++...+..++.+++.-... .....+|..+|.+|+..++|++|+++-..-+.+ .-..+.+--++|+
T Consensus 24 GERLck~gdcraGv~ff~aA~qvGTeDl~tLSAIYsQLGNAyfyL~DY~kAl~yH~hDltlar~lgdklGEAKssgNLGN 103 (639)
T KOG1130|consen 24 GERLCKMGDCRAGVDFFKAALQVGTEDLSTLSAIYSQLGNAYFYLKDYEKALKYHTHDLTLARLLGDKLGEAKSSGNLGN 103 (639)
T ss_pred HHHHHhccchhhhHHHHHHHHHhcchHHHHHHHHHHHhcchhhhHhhHHHHHhhhhhhHHHHHHhcchhccccccccccc
Confidence 677888999999999999998865543 333456888999999999999999985543332 2234566778999
Q ss_pred HHHHcCCHHHHHHHHHHHHHHhccCCCchhchHHHHHHHHHHHHHHCCC--------------------HHHHHHHHHHH
Q 006120 168 CLYVLGRYREAKEEYLLALEAAETGGNQWAYLLPQIYVNLGIALEGEGM--------------------VLSACEYYRES 227 (660)
Q Consensus 168 ~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~la~~~~~~g~--------------------~~~A~~~~~~a 227 (660)
++...|.|++|+.+..+-+.+....++... ...+++++|.+|...|+ ++.|.++|..-
T Consensus 104 tlKv~G~fdeA~~cc~rhLd~areLgDrv~--e~RAlYNlgnvYhakGk~~g~~~pee~g~f~~ev~~al~~Av~fy~eN 181 (639)
T KOG1130|consen 104 TLKVKGAFDEALTCCFRHLDFARELGDRVL--ESRALYNLGNVYHAKGKCTGLEAPEEKGAFNAEVTSALENAVKFYMEN 181 (639)
T ss_pred hhhhhcccchHHHHHHHHhHHHHHHhHHHh--hhHHHhhhhhhhhhcccccCCCChhhcccccHHHHHHHHHHHHHHHHH
Confidence 999999999999999999998887776655 78899999999988773 34566666666
Q ss_pred HHhCCC------cHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCC------HHHHHHHHHHHHhCCChHHHHHHHHHH
Q 006120 228 AILCPT------HFRALKLLGSALFGVGEYRAAVKALEEAIFIKPDY------ADAHCDLASALHAMGEDERAIEVFQKA 295 (660)
Q Consensus 228 l~~~p~------~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~------~~~~~~la~~~~~~g~~~~A~~~~~~a 295 (660)
+++... ...++-+||+.|+-+|+|+.|+..-+.-+.+.... -.++.++|.++.-+|+++.|+++|++.
T Consensus 182 L~l~~~lgDr~aqGRa~GnLGNTyYlLGdf~~ai~~H~~RL~ia~efGDrAaeRRA~sNlgN~hiflg~fe~A~ehYK~t 261 (639)
T KOG1130|consen 182 LELSEKLGDRLAQGRAYGNLGNTYYLLGDFDQAIHFHKLRLEIAQEFGDRAAERRAHSNLGNCHIFLGNFELAIEHYKLT 261 (639)
T ss_pred HHHHHHhhhHHhhcchhcccCceeeeeccHHHHHHHHHHHHHHHHHhhhHHHHHHhhcccchhhhhhcccHhHHHHHHHH
Confidence 655332 24578899999999999999999998888775433 468999999999999999999999998
Q ss_pred HHhC----C--CCHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHcccCC
Q 006120 296 IDLK----P--GHVDALYNLGGLYMDLGAGETEEAKKALKEALKMTNR 337 (660)
Q Consensus 296 l~~~----p--~~~~a~~~La~~~~~~~~g~~~eA~~~~~~al~l~p~ 337 (660)
+.+. . ..+..-+.||..|.-. .++++|+.+..+-+.+...
T Consensus 262 l~LAielg~r~vEAQscYSLgNtytll--~e~~kAI~Yh~rHLaIAqe 307 (639)
T KOG1130|consen 262 LNLAIELGNRTVEAQSCYSLGNTYTLL--KEVQKAITYHQRHLAIAQE 307 (639)
T ss_pred HHHHHHhcchhHHHHHHHHhhhHHHHH--HHHHHHHHHHHHHHHHHHH
Confidence 7663 2 2255678899999988 8999999999998887643
No 85
>KOG1128 consensus Uncharacterized conserved protein, contains TPR repeats [General function prediction only]
Probab=99.43 E-value=4.5e-12 Score=135.16 Aligned_cols=226 Identities=19% Similarity=0.148 Sum_probs=196.5
Q ss_pred chHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHhhccCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHH
Q 006120 84 SAEISEKRVFWEESTHDYAVFVKELGVLRNRADGARSREEAFDGHMAIGRVLYEHQLFKEALVSFKRACELQPTDVRPHF 163 (660)
Q Consensus 84 ~~~~~~~~~~l~~~~~~~g~~~~Al~~l~~a~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~ 163 (660)
-+........+++++...|-...|+..+++. ..|-....+|...|+..+|..+..+-++ .|+++..|.
T Consensus 394 lpp~Wq~q~~laell~slGitksAl~I~Erl-----------emw~~vi~CY~~lg~~~kaeei~~q~le-k~~d~~lyc 461 (777)
T KOG1128|consen 394 LPPIWQLQRLLAELLLSLGITKSALVIFERL-----------EMWDPVILCYLLLGQHGKAEEINRQELE-KDPDPRLYC 461 (777)
T ss_pred CCCcchHHHHHHHHHHHcchHHHHHHHHHhH-----------HHHHHHHHHHHHhcccchHHHHHHHHhc-CCCcchhHH
Confidence 3445556667789999999999999988764 6788889999999999999999999999 666777777
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHHHhccCCCchhchHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCcHHHHHHHHH
Q 006120 164 RAGNCLYVLGRYREAKEEYLLALEAAETGGNQWAYLLPQIYVNLGIALEGEGMVLSACEYYRESAILCPTHFRALKLLGS 243 (660)
Q Consensus 164 ~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~ 243 (660)
.+|.+.... .+|+++.++.... .+.+...+|......++++++..+++.+++++|-....|+.+|.
T Consensus 462 ~LGDv~~d~-------s~yEkawElsn~~-------sarA~r~~~~~~~~~~~fs~~~~hle~sl~~nplq~~~wf~~G~ 527 (777)
T KOG1128|consen 462 LLGDVLHDP-------SLYEKAWELSNYI-------SARAQRSLALLILSNKDFSEADKHLERSLEINPLQLGTWFGLGC 527 (777)
T ss_pred HhhhhccCh-------HHHHHHHHHhhhh-------hHHHHHhhccccccchhHHHHHHHHHHHhhcCccchhHHHhccH
Confidence 777766554 4555555554432 55666777777778999999999999999999999999999999
Q ss_pred HHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhCCChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCCCHHH
Q 006120 244 ALFGVGEYRAAVKALEEAIFIKPDYADAHCDLASALHAMGEDERAIEVFQKAIDLKPGHVDALYNLGGLYMDLGAGETEE 323 (660)
Q Consensus 244 ~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~La~~~~~~~~g~~~e 323 (660)
+..+.++++.|.++|.+++.++|++..+|+|++.+|...++-.+|...+++|++.+-++...|.|...+..+. |.+++
T Consensus 528 ~ALqlek~q~av~aF~rcvtL~Pd~~eaWnNls~ayi~~~~k~ra~~~l~EAlKcn~~~w~iWENymlvsvdv--ge~ed 605 (777)
T KOG1128|consen 528 AALQLEKEQAAVKAFHRCVTLEPDNAEAWNNLSTAYIRLKKKKRAFRKLKEALKCNYQHWQIWENYMLVSVDV--GEFED 605 (777)
T ss_pred HHHHHhhhHHHHHHHHHHhhcCCCchhhhhhhhHHHHHHhhhHHHHHHHHHHhhcCCCCCeeeechhhhhhhc--ccHHH
Confidence 9999999999999999999999999999999999999999999999999999999988999999999999999 99999
Q ss_pred HHHHHHHHHcccCC
Q 006120 324 AKKALKEALKMTNR 337 (660)
Q Consensus 324 A~~~~~~al~l~p~ 337 (660)
|++.|.+.+.+...
T Consensus 606 a~~A~~rll~~~~~ 619 (777)
T KOG1128|consen 606 AIKAYHRLLDLRKK 619 (777)
T ss_pred HHHHHHHHHHhhhh
Confidence 99999999988643
No 86
>PLN03081 pentatricopeptide (PPR) repeat-containing protein; Provisional
Probab=99.42 E-value=3.3e-11 Score=139.08 Aligned_cols=229 Identities=13% Similarity=0.026 Sum_probs=173.5
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHhhccCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHH
Q 006120 90 KRVFWEESTHDYAVFVKELGVLRNRADGARSREEAFDGHMAIGRVLYEHQLFKEALVSFKRACELQPTDVRPHFRAGNCL 169 (660)
Q Consensus 90 ~~~~l~~~~~~~g~~~~Al~~l~~a~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~ 169 (660)
.+..+...+...|.+++|.+.+....+..-.. ....+..+...|.+.|++++|...|+++.+ .+...|..+...|
T Consensus 327 t~~~ll~a~~~~g~~~~a~~i~~~m~~~g~~~--d~~~~~~Li~~y~k~G~~~~A~~vf~~m~~---~d~~t~n~lI~~y 401 (697)
T PLN03081 327 TFSIMIRIFSRLALLEHAKQAHAGLIRTGFPL--DIVANTALVDLYSKWGRMEDARNVFDRMPR---KNLISWNALIAGY 401 (697)
T ss_pred HHHHHHHHHHhccchHHHHHHHHHHHHhCCCC--CeeehHHHHHHHHHCCCHHHHHHHHHhCCC---CCeeeHHHHHHHH
Confidence 34444566677788888888887777653222 135667788888888888888888887653 2566788888888
Q ss_pred HHcCCHHHHHHHHHHHHHHhccCCCchhchHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCC--CcHHHHHHHHHHHHH
Q 006120 170 YVLGRYREAKEEYLLALEAAETGGNQWAYLLPQIYVNLGIALEGEGMVLSACEYYRESAILCP--THFRALKLLGSALFG 247 (660)
Q Consensus 170 ~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p--~~~~~~~~lg~~~~~ 247 (660)
.+.|+.++|++.|++..+..... ...++..+...+...|..++|.++|+...+..+ .+...|..+...+.+
T Consensus 402 ~~~G~~~~A~~lf~~M~~~g~~P-------d~~T~~~ll~a~~~~g~~~~a~~~f~~m~~~~g~~p~~~~y~~li~~l~r 474 (697)
T PLN03081 402 GNHGRGTKAVEMFERMIAEGVAP-------NHVTFLAVLSACRYSGLSEQGWEIFQSMSENHRIKPRAMHYACMIELLGR 474 (697)
T ss_pred HHcCCHHHHHHHHHHHHHhCCCC-------CHHHHHHHHHHHhcCCcHHHHHHHHHHHHHhcCCCCCccchHhHHHHHHh
Confidence 88888888888888887654322 456677777888888888888888888876432 234567788888888
Q ss_pred CCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhCCChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCCCHHHHHHH
Q 006120 248 VGEYRAAVKALEEAIFIKPDYADAHCDLASALHAMGEDERAIEVFQKAIDLKPGHVDALYNLGGLYMDLGAGETEEAKKA 327 (660)
Q Consensus 248 ~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~La~~~~~~~~g~~~eA~~~ 327 (660)
.|++++|.+.+++. ...| +...|..+...+...|+.+.|...+++.+++.|++...|..|+.+|... |++++|.+.
T Consensus 475 ~G~~~eA~~~~~~~-~~~p-~~~~~~~Ll~a~~~~g~~~~a~~~~~~l~~~~p~~~~~y~~L~~~y~~~--G~~~~A~~v 550 (697)
T PLN03081 475 EGLLDEAYAMIRRA-PFKP-TVNMWAALLTACRIHKNLELGRLAAEKLYGMGPEKLNNYVVLLNLYNSS--GRQAEAAKV 550 (697)
T ss_pred cCCHHHHHHHHHHC-CCCC-CHHHHHHHHHHHHHcCCcHHHHHHHHHHhCCCCCCCcchHHHHHHHHhC--CCHHHHHHH
Confidence 88888888887764 2233 4667888888888888898888888888888888888888888888887 889998888
Q ss_pred HHHHHcc
Q 006120 328 LKEALKM 334 (660)
Q Consensus 328 ~~~al~l 334 (660)
+++..+.
T Consensus 551 ~~~m~~~ 557 (697)
T PLN03081 551 VETLKRK 557 (697)
T ss_pred HHHHHHc
Confidence 8877654
No 87
>PLN03218 maturation of RBCL 1; Provisional
Probab=99.42 E-value=4.8e-10 Score=131.74 Aligned_cols=292 Identities=15% Similarity=0.052 Sum_probs=214.4
Q ss_pred cchhhccCchHHHHhccCchhhHHHHHHHHHHHHhhccCCcCCchHHhhhHHHH-----------------HHhCCchHH
Q 006120 25 AAWAVSPNHGIVFDDTWKIVDDLEILVKRLKAKQAKDGKLKGDNSDAFSDAGWS-----------------RELGTSAEI 87 (660)
Q Consensus 25 ~~~~~~~~lg~~y~~~~~~~~al~~~~~~~~~a~~~~~~l~~~~~~a~~~~~~~-----------------~~l~~~~~~ 87 (660)
.+..+|..+-..|.+.+++.++...+....+.. ..++ ...|..+... ...+..+ .
T Consensus 435 pd~~Tyn~LL~a~~k~g~~e~A~~lf~~M~~~G------l~pD-~~tynsLI~~y~k~G~vd~A~~vf~eM~~~Gv~P-d 506 (1060)
T PLN03218 435 PTLSTFNMLMSVCASSQDIDGALRVLRLVQEAG------LKAD-CKLYTTLISTCAKSGKVDAMFEVFHEMVNAGVEA-N 506 (1060)
T ss_pred CCHHHHHHHHHHHHhCcCHHHHHHHHHHHHHcC------CCCC-HHHHHHHHHHHHhCcCHHHHHHHHHHHHHcCCCC-C
Confidence 456778888888999999999998887776631 1111 1112111111 1111111 2
Q ss_pred HHhHHHHHHHHHHHHHHHHHHHHHHHHHhhccCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh----CCCCHHHHH
Q 006120 88 SEKRVFWEESTHDYAVFVKELGVLRNRADGARSREEAFDGHMAIGRVLYEHQLFKEALVSFKRACEL----QPTDVRPHF 163 (660)
Q Consensus 88 ~~~~~~l~~~~~~~g~~~~Al~~l~~a~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~----~p~~~~~~~ 163 (660)
...+..+...+...|++++|+..+.+.....-.+. ...|..+...+.+.|++++|.+.|.++... .| +...+.
T Consensus 507 vvTynaLI~gy~k~G~~eeAl~lf~~M~~~Gv~PD--~vTYnsLI~a~~k~G~~deA~~lf~eM~~~~~gi~P-D~vTyn 583 (1060)
T PLN03218 507 VHTFGALIDGCARAGQVAKAFGAYGIMRSKNVKPD--RVVFNALISACGQSGAVDRAFDVLAEMKAETHPIDP-DHITVG 583 (1060)
T ss_pred HHHHHHHHHHHHHCcCHHHHHHHHHHHHHcCCCCC--HHHHHHHHHHHHHCCCHHHHHHHHHHHHHhcCCCCC-cHHHHH
Confidence 34455556677888888899888887765432221 356788888888899999999999888763 34 456778
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHHHhccCCCchhchHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh--CCCcHHHHHHH
Q 006120 164 RAGNCLYVLGRYREAKEEYLLALEAAETGGNQWAYLLPQIYVNLGIALEGEGMVLSACEYYRESAIL--CPTHFRALKLL 241 (660)
Q Consensus 164 ~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~--~p~~~~~~~~l 241 (660)
.+...|.+.|++++|.+.|+++.+.+... ...+|..+...|.+.|++++|+..|++..+. .|+ ...|..+
T Consensus 584 aLI~ay~k~G~ldeA~elf~~M~e~gi~p-------~~~tynsLI~ay~k~G~~deAl~lf~eM~~~Gv~PD-~~TynsL 655 (1060)
T PLN03218 584 ALMKACANAGQVDRAKEVYQMIHEYNIKG-------TPEVYTIAVNSCSQKGDWDFALSIYDDMKKKGVKPD-EVFFSAL 655 (1060)
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHHcCCCC-------ChHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCC-HHHHHHH
Confidence 88888889999999999998888765332 4577888888889999999999999888775 344 6678888
Q ss_pred HHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHhCCChHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHhcC
Q 006120 242 GSALFGVGEYRAAVKALEEAIFIK-PDYADAHCDLASALHAMGEDERAIEVFQKAIDL--KPGHVDALYNLGGLYMDLGA 318 (660)
Q Consensus 242 g~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~--~p~~~~a~~~La~~~~~~~~ 318 (660)
...+.+.|++++|.++++++.+.. +.+...|..+...|.+.|++++|...|++..+. .| +...|..|...|.+.
T Consensus 656 I~a~~k~G~~eeA~~l~~eM~k~G~~pd~~tynsLI~ay~k~G~~eeA~~lf~eM~~~g~~P-dvvtyN~LI~gy~k~-- 732 (1060)
T PLN03218 656 VDVAGHAGDLDKAFEILQDARKQGIKLGTVSYSSLMGACSNAKNWKKALELYEDIKSIKLRP-TVSTMNALITALCEG-- 732 (1060)
T ss_pred HHHHHhCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCC-CHHHHHHHHHHHHHC--
Confidence 888999999999999999888764 345778888999999999999999999887664 34 467788888999888
Q ss_pred CCHHHHHHHHHHHHcc--cCCh
Q 006120 319 GETEEAKKALKEALKM--TNRV 338 (660)
Q Consensus 319 g~~~eA~~~~~~al~l--~p~~ 338 (660)
|++++|.+.|++.... .|+.
T Consensus 733 G~~eeAlelf~eM~~~Gi~Pd~ 754 (1060)
T PLN03218 733 NQLPKALEVLSEMKRLGLCPNT 754 (1060)
T ss_pred CCHHHHHHHHHHHHHcCCCCCH
Confidence 9999999999987654 3553
No 88
>KOG3060 consensus Uncharacterized conserved protein [Function unknown]
Probab=99.41 E-value=1.1e-10 Score=110.11 Aligned_cols=171 Identities=23% Similarity=0.181 Sum_probs=83.0
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhccCCCchhchHHHHHHHHHH
Q 006120 130 AIGRVLYEHQLFKEALVSFKRACELQPTDVRPHFRAGNCLYVLGRYREAKEEYLLALEAAETGGNQWAYLLPQIYVNLGI 209 (660)
Q Consensus 130 ~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~la~ 209 (660)
....+....|+.+-|..++++.....|+...+...-|..+...|++++|+++|+..++-+|. ...++...-.
T Consensus 57 qV~IAAld~~~~~lAq~C~~~L~~~fp~S~RV~~lkam~lEa~~~~~~A~e~y~~lL~ddpt--------~~v~~KRKlA 128 (289)
T KOG3060|consen 57 QVFIAALDTGRDDLAQKCINQLRDRFPGSKRVGKLKAMLLEATGNYKEAIEYYESLLEDDPT--------DTVIRKRKLA 128 (289)
T ss_pred HHHHHHHHhcchHHHHHHHHHHHHhCCCChhHHHHHHHHHHHhhchhhHHHHHHHHhccCcc--------hhHHHHHHHH
Confidence 33444444455555555555544444555555444555555555555555555555554444 3333333333
Q ss_pred HHHHCCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhCC---ChH
Q 006120 210 ALEGEGMVLSACEYYRESAILCPTHFRALKLLGSALFGVGEYRAAVKALEEAIFIKPDYADAHCDLASALHAMG---EDE 286 (660)
Q Consensus 210 ~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g---~~~ 286 (660)
+...+|+.-+|++.+..-++..+.+.++|..++.+|...|+|++|.-++++.+-+.|.++..+..+|.+++.+| +++
T Consensus 129 ilka~GK~l~aIk~ln~YL~~F~~D~EAW~eLaeiY~~~~~f~kA~fClEE~ll~~P~n~l~f~rlae~~Yt~gg~eN~~ 208 (289)
T KOG3060|consen 129 ILKAQGKNLEAIKELNEYLDKFMNDQEAWHELAEIYLSEGDFEKAAFCLEELLLIQPFNPLYFQRLAEVLYTQGGAENLE 208 (289)
T ss_pred HHHHcCCcHHHHHHHHHHHHHhcCcHHHHHHHHHHHHhHhHHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHhhHHHHH
Confidence 44444444455555555555555555555555555555555555555555555555555555555554444433 233
Q ss_pred HHHHHHHHHHHhCCCCHHHHHH
Q 006120 287 RAIEVFQKAIDLKPGHVDALYN 308 (660)
Q Consensus 287 ~A~~~~~~al~~~p~~~~a~~~ 308 (660)
-|.++|.++++++|.+..+++.
T Consensus 209 ~arkyy~~alkl~~~~~ral~G 230 (289)
T KOG3060|consen 209 LARKYYERALKLNPKNLRALFG 230 (289)
T ss_pred HHHHHHHHHHHhChHhHHHHHH
Confidence 4445555555555544444433
No 89
>PF12569 NARP1: NMDA receptor-regulated protein 1 ; InterPro: IPR021183 This group represents N-terminal acetyltransferase A (NatA) auxiliary subunit and represents a non-catalytic component of the NatA N-terminal acetyltransferase, which catalyzes acetylation of proteins beginning with Met-Ser, Met-Gly and Met-Ala. N-terminal acetylation plays a role in normal eukaryotic translation and processing, protect against proteolytic degradation and protein turnover. NAT1 anchors ARD1 and NAT5 to the ribosome and may present the N- terminal of nascent polypeptides for acetylation [], [].
Probab=99.41 E-value=1.5e-10 Score=125.41 Aligned_cols=244 Identities=16% Similarity=0.049 Sum_probs=187.6
Q ss_pred HHHhHHHHHHHHHHHHHHHHHHHHHHHHHhhccCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHH
Q 006120 87 ISEKRVFWEESTHDYAVFVKELGVLRNRADGARSREEAFDGHMAIGRVLYEHQLFKEALVSFKRACELQPTDVRPHFRAG 166 (660)
Q Consensus 87 ~~~~~~~l~~~~~~~g~~~~Al~~l~~a~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la 166 (660)
..+..++...++.+.|++++|++.+.+......+. ...+-..|.++...|++++|...|...++.+|++...+..+.
T Consensus 3 ~SE~lLY~~~il~e~g~~~~AL~~L~~~~~~I~Dk---~~~~E~rA~ll~kLg~~~eA~~~y~~Li~rNPdn~~Yy~~L~ 79 (517)
T PF12569_consen 3 HSELLLYKNSILEEAGDYEEALEHLEKNEKQILDK---LAVLEKRAELLLKLGRKEEAEKIYRELIDRNPDNYDYYRGLE 79 (517)
T ss_pred HHHHHHHHHHHHHHCCCHHHHHHHHHhhhhhCCCH---HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCcHHHHHHHH
Confidence 35667788889999999999999998877666555 367788999999999999999999999999999999998888
Q ss_pred HHHHHcC-----CHHHHHHHHHHHHHHhccCCCchhc-h-----------------------------------------
Q 006120 167 NCLYVLG-----RYREAKEEYLLALEAAETGGNQWAY-L----------------------------------------- 199 (660)
Q Consensus 167 ~~~~~~g-----~~~~A~~~~~~al~~~p~~~~~~~~-~----------------------------------------- 199 (660)
.+..... ..+.-...|++.....|........ +
T Consensus 80 ~~~g~~~~~~~~~~~~~~~~y~~l~~~yp~s~~~~rl~L~~~~g~~F~~~~~~yl~~~l~KgvPslF~~lk~Ly~d~~K~ 159 (517)
T PF12569_consen 80 EALGLQLQLSDEDVEKLLELYDELAEKYPRSDAPRRLPLDFLEGDEFKERLDEYLRPQLRKGVPSLFSNLKPLYKDPEKA 159 (517)
T ss_pred HHHhhhcccccccHHHHHHHHHHHHHhCccccchhHhhcccCCHHHHHHHHHHHHHHHHhcCCchHHHHHHHHHcChhHH
Confidence 8873332 4555666666665555432111000 0
Q ss_pred ---------------------------------HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHH
Q 006120 200 ---------------------------------LPQIYVNLGIALEGEGMVLSACEYYRESAILCPTHFRALKLLGSALF 246 (660)
Q Consensus 200 ---------------------------------~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~ 246 (660)
...+++.+++.|...|++++|+++++++|+..|..++.+...|.++.
T Consensus 160 ~~i~~l~~~~~~~l~~~~~~~~~~~~~~~~p~~~lw~~~~lAqhyd~~g~~~~Al~~Id~aI~htPt~~ely~~KarilK 239 (517)
T PF12569_consen 160 AIIESLVEEYVNSLESNGSFSNGDDEEKEPPSTLLWTLYFLAQHYDYLGDYEKALEYIDKAIEHTPTLVELYMTKARILK 239 (517)
T ss_pred HHHHHHHHHHHHhhcccCCCCCccccccCCchHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHH
Confidence 13466778888888888888888888888888888888888888888
Q ss_pred HCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhCCChHHHHHHHHHHHHhC--CCC-----HHHH--HHHHHHHHHhc
Q 006120 247 GVGEYRAAVKALEEAIFIKPDYADAHCDLASALHAMGEDERAIEVFQKAIDLK--PGH-----VDAL--YNLGGLYMDLG 317 (660)
Q Consensus 247 ~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~--p~~-----~~a~--~~La~~~~~~~ 317 (660)
..|++.+|...++.|-.+++.+-.+....+..+++.|+.++|...+..-...+ |.. ...| ...|.+|...
T Consensus 240 h~G~~~~Aa~~~~~Ar~LD~~DRyiNsK~aKy~LRa~~~e~A~~~~~~Ftr~~~~~~~~L~~mQc~Wf~~e~a~a~~r~- 318 (517)
T PF12569_consen 240 HAGDLKEAAEAMDEARELDLADRYINSKCAKYLLRAGRIEEAEKTASLFTREDVDPLSNLNDMQCMWFETECAEAYLRQ- 318 (517)
T ss_pred HCCCHHHHHHHHHHHHhCChhhHHHHHHHHHHHHHCCCHHHHHHHHHhhcCCCCCcccCHHHHHHHHHHHHHHHHHHHH-
Confidence 88888888888888888888887777788888888888888888877665443 111 1133 3567788887
Q ss_pred CCCHHHHHHHHHHHHccc
Q 006120 318 AGETEEAKKALKEALKMT 335 (660)
Q Consensus 318 ~g~~~eA~~~~~~al~l~ 335 (660)
|++..|++.|....+.-
T Consensus 319 -~~~~~ALk~~~~v~k~f 335 (517)
T PF12569_consen 319 -GDYGLALKRFHAVLKHF 335 (517)
T ss_pred -hhHHHHHHHHHHHHHHH
Confidence 89999998888887763
No 90
>KOG1127 consensus TPR repeat-containing protein [RNA processing and modification]
Probab=99.38 E-value=5.9e-11 Score=130.00 Aligned_cols=283 Identities=17% Similarity=0.110 Sum_probs=218.7
Q ss_pred CchHHHHhccCchhhHHHHHHHHHHHHhhccCCcCCchHHhhhHHHHHHhC----CchH---HHHhHHHHHHHHHHHHHH
Q 006120 32 NHGIVFDDTWKIVDDLEILVKRLKAKQAKDGKLKGDNSDAFSDAGWSRELG----TSAE---ISEKRVFWEESTHDYAVF 104 (660)
Q Consensus 32 ~lg~~y~~~~~~~~al~~~~~~~~~a~~~~~~l~~~~~~a~~~~~~~~~l~----~~~~---~~~~~~~l~~~~~~~g~~ 104 (660)
..|++..+...+.++...+-..... ..+-..+..+.|+.+.. .+.. ......+|...-....+.
T Consensus 404 akgl~~ie~~~y~Daa~tl~lv~~~---------s~nd~slselswc~~~~~ek~mdva~~~~~e~~~~w~a~~~~rK~~ 474 (1238)
T KOG1127|consen 404 AKGLAPIEANVYTDAAITLDLVSSL---------SFNDDSLSELSWCLPRALEKMMDVALLLECENSEFWVALGCMRKNS 474 (1238)
T ss_pred hcchhHHHHhhchHHHHHHHHHHHh---------hcCchhhhHhhHHHHHhHHhhhhHHHHHHHHHHHHHHHHHHhhhhH
Confidence 4455555555555555555444441 24556677777876521 1111 112333333333445557
Q ss_pred HHHHHHHHHHHhhccCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHH
Q 006120 105 VKELGVLRNRADGARSREEAFDGHMAIGRVLYEHQLFKEALVSFKRACELQPTDVRPHFRAGNCLYVLGRYREAKEEYLL 184 (660)
Q Consensus 105 ~~Al~~l~~a~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~ 184 (660)
..|+..+-+++...+.. +.++..+|.+|...-+...|..+|.+|.++++.+..++-..+..|....+++.|....-.
T Consensus 475 ~~al~ali~alrld~~~---apaf~~LG~iYrd~~Dm~RA~kCf~KAFeLDatdaeaaaa~adtyae~~~we~a~~I~l~ 551 (1238)
T KOG1127|consen 475 ALALHALIRALRLDVSL---APAFAFLGQIYRDSDDMKRAKKCFDKAFELDATDAEAAAASADTYAEESTWEEAFEICLR 551 (1238)
T ss_pred HHHHHHHHHHHhcccch---hHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCchhhhhHHHHHHHhhccccHHHHHHHHHH
Confidence 77788888887766554 478899999999999999999999999999999999999999999999999999999777
Q ss_pred HHHHhccCCCchhchHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh
Q 006120 185 ALEAAETGGNQWAYLLPQIYVNLGIALEGEGMVLSACEYYRESAILCPTHFRALKLLGSALFGVGEYRAAVKALEEAIFI 264 (660)
Q Consensus 185 al~~~p~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~ 264 (660)
+-+..|... ....|..+|..|...++...|+..|+.+++.+|.+...|..+|.+|...|++..|++.|.+|..+
T Consensus 552 ~~qka~a~~------~k~nW~~rG~yyLea~n~h~aV~~fQsALR~dPkD~n~W~gLGeAY~~sGry~~AlKvF~kAs~L 625 (1238)
T KOG1127|consen 552 AAQKAPAFA------CKENWVQRGPYYLEAHNLHGAVCEFQSALRTDPKDYNLWLGLGEAYPESGRYSHALKVFTKASLL 625 (1238)
T ss_pred HhhhchHHH------HHhhhhhccccccCccchhhHHHHHHHHhcCCchhHHHHHHHHHHHHhcCceehHHHhhhhhHhc
Confidence 776666522 34456669999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCHHHHHHHHHHHHhCCChHHHHHHHHHHHHhCCCC-------HHHHHHHHHHHHHhcCCCHHHHHHHHHHHHcc
Q 006120 265 KPDYADAHCDLASALHAMGEDERAIEVFQKAIDLKPGH-------VDALYNLGGLYMDLGAGETEEAKKALKEALKM 334 (660)
Q Consensus 265 ~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~-------~~a~~~La~~~~~~~~g~~~eA~~~~~~al~l 334 (660)
+|.+....+..+.+...+|+|.+|+..+...+...... ++.+..++..+... |=..+|..+++++++.
T Consensus 626 rP~s~y~~fk~A~~ecd~GkYkeald~l~~ii~~~s~e~~~q~gLaE~~ir~akd~~~~--gf~~kavd~~eksie~ 700 (1238)
T KOG1127|consen 626 RPLSKYGRFKEAVMECDNGKYKEALDALGLIIYAFSLERTGQNGLAESVIRDAKDSAIT--GFQKKAVDFFEKSIES 700 (1238)
T ss_pred CcHhHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHH--HHhhhhhHHHHHHHHH
Confidence 99999999999999999999999999999988775443 44555555555554 6666777777776654
No 91
>KOG3060 consensus Uncharacterized conserved protein [Function unknown]
Probab=99.38 E-value=2.4e-10 Score=107.80 Aligned_cols=175 Identities=20% Similarity=0.080 Sum_probs=159.9
Q ss_pred CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhccCCCchhchHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCc
Q 006120 155 QPTDVRPHFRAGNCLYVLGRYREAKEEYLLALEAAETGGNQWAYLLPQIYVNLGIALEGEGMVLSACEYYRESAILCPTH 234 (660)
Q Consensus 155 ~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~ 234 (660)
.++....+-....+....|+.+-|..++++.....|. ...+...-|..+...|++++|+++|+..++-+|.+
T Consensus 48 g~e~w~l~EqV~IAAld~~~~~lAq~C~~~L~~~fp~--------S~RV~~lkam~lEa~~~~~~A~e~y~~lL~ddpt~ 119 (289)
T KOG3060|consen 48 GDEIWTLYEQVFIAALDTGRDDLAQKCINQLRDRFPG--------SKRVGKLKAMLLEATGNYKEAIEYYESLLEDDPTD 119 (289)
T ss_pred CchHHHHHHHHHHHHHHhcchHHHHHHHHHHHHhCCC--------ChhHHHHHHHHHHHhhchhhHHHHHHHHhccCcch
Confidence 3444556667778888999999999999999998888 67888888999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhCCChHHHHHHHHHHHHhCCCCHHHHHHHHHHHH
Q 006120 235 FRALKLLGSALFGVGEYRAAVKALEEAIFIKPDYADAHCDLASALHAMGEDERAIEVFQKAIDLKPGHVDALYNLGGLYM 314 (660)
Q Consensus 235 ~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~La~~~~ 314 (660)
...+...-.+...+|+.-+|++.+...++..+.+.++|..++.+|...|++++|.-++++.+-+.|.++-.+..+|.+++
T Consensus 120 ~v~~KRKlAilka~GK~l~aIk~ln~YL~~F~~D~EAW~eLaeiY~~~~~f~kA~fClEE~ll~~P~n~l~f~rlae~~Y 199 (289)
T KOG3060|consen 120 TVIRKRKLAILKAQGKNLEAIKELNEYLDKFMNDQEAWHELAEIYLSEGDFEKAAFCLEELLLIQPFNPLYFQRLAEVLY 199 (289)
T ss_pred hHHHHHHHHHHHHcCCcHHHHHHHHHHHHHhcCcHHHHHHHHHHHHhHhHHHHHHHHHHHHHHcCCCcHHHHHHHHHHHH
Confidence 99999988899999999999999999999999999999999999999999999999999999999999999999999988
Q ss_pred Hhc-CCCHHHHHHHHHHHHcccCC
Q 006120 315 DLG-AGETEEAKKALKEALKMTNR 337 (660)
Q Consensus 315 ~~~-~g~~~eA~~~~~~al~l~p~ 337 (660)
-+| ..+..-|.++|.++++++|.
T Consensus 200 t~gg~eN~~~arkyy~~alkl~~~ 223 (289)
T KOG3060|consen 200 TQGGAENLELARKYYERALKLNPK 223 (289)
T ss_pred HHhhHHHHHHHHHHHHHHHHhChH
Confidence 773 23678899999999999983
No 92
>COG3071 HemY Uncharacterized enzyme of heme biosynthesis [Coenzyme metabolism]
Probab=99.38 E-value=1.1e-09 Score=110.09 Aligned_cols=240 Identities=18% Similarity=0.120 Sum_probs=192.7
Q ss_pred HHhHHHHHHHHHHHHHHHHHHHHHHHHHhhccCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHH
Q 006120 88 SEKRVFWEESTHDYAVFVKELGVLRNRADGARSREEAFDGHMAIGRVLYEHQLFKEALVSFKRACELQPTDVRPHFRAGN 167 (660)
Q Consensus 88 ~~~~~~l~~~~~~~g~~~~Al~~l~~a~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~ 167 (660)
.-.++.-+++....|++..+-.++.++.+..+++. .......+.+...+|+++.|..-..++++..|.++.+......
T Consensus 118 ~l~~l~aA~AA~qrgd~~~an~yL~eaae~~~~~~--l~v~ltrarlll~~~d~~aA~~~v~~ll~~~pr~~~vlrLa~r 195 (400)
T COG3071 118 VLAYLLAAEAAQQRGDEDRANRYLAEAAELAGDDT--LAVELTRARLLLNRRDYPAARENVDQLLEMTPRHPEVLRLALR 195 (400)
T ss_pred HHHHHHHHHHHHhcccHHHHHHHHHHHhccCCCch--HHHHHHHHHHHHhCCCchhHHHHHHHHHHhCcCChHHHHHHHH
Confidence 34455557888999999999999999998766554 3567889999999999999999999999999999999999999
Q ss_pred HHHHcCCHHHHHHHHHHHHHHhccCC------------------------C----chhc------hHHHHHHHHHHHHHH
Q 006120 168 CLYVLGRYREAKEEYLLALEAAETGG------------------------N----QWAY------LLPQIYVNLGIALEG 213 (660)
Q Consensus 168 ~~~~~g~~~~A~~~~~~al~~~p~~~------------------------~----~~~~------~~~~~~~~la~~~~~ 213 (660)
+|...|++.+...++.+.-+..--+. . .|.. ..+.+...++.-+..
T Consensus 196 ~y~~~g~~~~ll~~l~~L~ka~~l~~~e~~~le~~a~~glL~q~~~~~~~~gL~~~W~~~pr~lr~~p~l~~~~a~~li~ 275 (400)
T COG3071 196 AYIRLGAWQALLAILPKLRKAGLLSDEEAARLEQQAWEGLLQQARDDNGSEGLKTWWKNQPRKLRNDPELVVAYAERLIR 275 (400)
T ss_pred HHHHhccHHHHHHHHHHHHHccCCChHHHHHHHHHHHHHHHHHHhccccchHHHHHHHhccHHhhcChhHHHHHHHHHHH
Confidence 99999999999888876654321110 0 0110 035666777888888
Q ss_pred CCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhCCChHHHHHHHH
Q 006120 214 EGMVLSACEYYRESAILCPTHFRALKLLGSALFGVGEYRAAVKALEEAIFIKPDYADAHCDLASALHAMGEDERAIEVFQ 293 (660)
Q Consensus 214 ~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~ 293 (660)
.|+.++|.+..+++++..-+.. ....+ -...-+++..=++..++.++..|+++..+..||.++.+.+.|.+|..+|+
T Consensus 276 l~~~~~A~~~i~~~Lk~~~D~~-L~~~~--~~l~~~d~~~l~k~~e~~l~~h~~~p~L~~tLG~L~~k~~~w~kA~~~le 352 (400)
T COG3071 276 LGDHDEAQEIIEDALKRQWDPR-LCRLI--PRLRPGDPEPLIKAAEKWLKQHPEDPLLLSTLGRLALKNKLWGKASEALE 352 (400)
T ss_pred cCChHHHHHHHHHHHHhccChh-HHHHH--hhcCCCCchHHHHHHHHHHHhCCCChhHHHHHHHHHHHhhHHHHHHHHHH
Confidence 9999999999999988754432 21111 22345788888888999999999999999999999999999999999999
Q ss_pred HHHHhCCCCHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHccc
Q 006120 294 KAIDLKPGHVDALYNLGGLYMDLGAGETEEAKKALKEALKMT 335 (660)
Q Consensus 294 ~al~~~p~~~~a~~~La~~~~~~~~g~~~eA~~~~~~al~l~ 335 (660)
.+++..|+ ...+..+|.++.++ |+..+|...+++++.+.
T Consensus 353 aAl~~~~s-~~~~~~la~~~~~~--g~~~~A~~~r~e~L~~~ 391 (400)
T COG3071 353 AALKLRPS-ASDYAELADALDQL--GEPEEAEQVRREALLLT 391 (400)
T ss_pred HHHhcCCC-hhhHHHHHHHHHHc--CChHHHHHHHHHHHHHh
Confidence 99998886 67788899999998 99999999999998553
No 93
>COG5010 TadD Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking and secretion]
Probab=99.37 E-value=9.6e-11 Score=111.72 Aligned_cols=177 Identities=19% Similarity=0.140 Sum_probs=160.3
Q ss_pred HHHHHHHHHhhccCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Q 006120 107 ELGVLRNRADGARSREEAFDGHMAIGRVLYEHQLFKEALVSFKRACELQPTDVRPHFRAGNCLYVLGRYREAKEEYLLAL 186 (660)
Q Consensus 107 Al~~l~~a~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al 186 (660)
+...+-+.....|.. ..+ ..++..+...|+-+.+..+..++...+|.+...+..+|......|++.+|+..++++.
T Consensus 52 a~~al~~~~~~~p~d---~~i-~~~a~a~~~~G~a~~~l~~~~~~~~~~~~d~~ll~~~gk~~~~~g~~~~A~~~~rkA~ 127 (257)
T COG5010 52 AAAALGAAVLRNPED---LSI-AKLATALYLRGDADSSLAVLQKSAIAYPKDRELLAAQGKNQIRNGNFGEAVSVLRKAA 127 (257)
T ss_pred HHHHHHHHHhcCcch---HHH-HHHHHHHHhcccccchHHHHhhhhccCcccHHHHHHHHHHHHHhcchHHHHHHHHHHh
Confidence 444444444433433 356 8899999999999999999999999999999999889999999999999999999999
Q ss_pred HHhccCCCchhchHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCC
Q 006120 187 EAAETGGNQWAYLLPQIYVNLGIALEGEGMVLSACEYYRESAILCPTHFRALKLLGSALFGVGEYRAAVKALEEAIFIKP 266 (660)
Q Consensus 187 ~~~p~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p 266 (660)
.+.|+ ...++..+|.+|.+.|++++|...|.+++++.|+.+.+..|+|..+.-.|+++.|..++..+....+
T Consensus 128 ~l~p~--------d~~~~~~lgaaldq~Gr~~~Ar~ay~qAl~L~~~~p~~~nNlgms~~L~gd~~~A~~lll~a~l~~~ 199 (257)
T COG5010 128 RLAPT--------DWEAWNLLGAALDQLGRFDEARRAYRQALELAPNEPSIANNLGMSLLLRGDLEDAETLLLPAYLSPA 199 (257)
T ss_pred ccCCC--------ChhhhhHHHHHHHHccChhHHHHHHHHHHHhccCCchhhhhHHHHHHHcCCHHHHHHHHHHHHhCCC
Confidence 99999 8899999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCHHHHHHHHHHHHhCCChHHHHHHHHHH
Q 006120 267 DYADAHCDLASALHAMGEDERAIEVFQKA 295 (660)
Q Consensus 267 ~~~~~~~~la~~~~~~g~~~~A~~~~~~a 295 (660)
.+..+..|++.+...+|++++|.....+-
T Consensus 200 ad~~v~~NLAl~~~~~g~~~~A~~i~~~e 228 (257)
T COG5010 200 ADSRVRQNLALVVGLQGDFREAEDIAVQE 228 (257)
T ss_pred CchHHHHHHHHHHhhcCChHHHHhhcccc
Confidence 99999999999999999999998876553
No 94
>TIGR02552 LcrH_SycD type III secretion low calcium response chaperone LcrH/SycD. ScyD/LcrH contains three central tetratricopeptide-like repeats that are predicted to fold into an all-alpha-helical array.
Probab=99.35 E-value=2.3e-11 Score=109.53 Aligned_cols=113 Identities=23% Similarity=0.308 Sum_probs=61.9
Q ss_pred HHHHHHHhCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhCCChHHHHHHHHHHHHhCCCC
Q 006120 223 YYRESAILCPTHFRALKLLGSALFGVGEYRAAVKALEEAIFIKPDYADAHCDLASALHAMGEDERAIEVFQKAIDLKPGH 302 (660)
Q Consensus 223 ~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~ 302 (660)
.+++++..+|++..+...+|..+...|++++|+..+++++..+|.++.++..+|.++..+|++++|+.++++++..+|++
T Consensus 5 ~~~~~l~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~p~~ 84 (135)
T TIGR02552 5 TLKDLLGLDSEQLEQIYALAYNLYQQGRYDEALKLFQLLAAYDPYNSRYWLGLAACCQMLKEYEEAIDAYALAAALDPDD 84 (135)
T ss_pred hHHHHHcCChhhHHHHHHHHHHHHHcccHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCC
Confidence 34455555555555555555555555555555555555555555555555555555555555555555555555555555
Q ss_pred HHHHHHHHHHHHHhcCCCHHHHHHHHHHHHcccCC
Q 006120 303 VDALYNLGGLYMDLGAGETEEAKKALKEALKMTNR 337 (660)
Q Consensus 303 ~~a~~~La~~~~~~~~g~~~eA~~~~~~al~l~p~ 337 (660)
+..++.+|.++... |++++|+..++++++++|+
T Consensus 85 ~~~~~~la~~~~~~--g~~~~A~~~~~~al~~~p~ 117 (135)
T TIGR02552 85 PRPYFHAAECLLAL--GEPESALKALDLAIEICGE 117 (135)
T ss_pred hHHHHHHHHHHHHc--CCHHHHHHHHHHHHHhccc
Confidence 55555555555555 5555555555555555554
No 95
>TIGR02552 LcrH_SycD type III secretion low calcium response chaperone LcrH/SycD. ScyD/LcrH contains three central tetratricopeptide-like repeats that are predicted to fold into an all-alpha-helical array.
Probab=99.35 E-value=2e-11 Score=109.93 Aligned_cols=107 Identities=22% Similarity=0.193 Sum_probs=102.2
Q ss_pred HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHH
Q 006120 200 LPQIYVNLGIALEGEGMVLSACEYYRESAILCPTHFRALKLLGSALFGVGEYRAAVKALEEAIFIKPDYADAHCDLASAL 279 (660)
Q Consensus 200 ~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~ 279 (660)
.....+.+|..+...|++++|+..+++++..+|.++.++..+|.++...|++++|+..+++++..+|+++..++.+|.++
T Consensus 16 ~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~la~~~ 95 (135)
T TIGR02552 16 QLEQIYALAYNLYQQGRYDEALKLFQLLAAYDPYNSRYWLGLAACCQMLKEYEEAIDAYALAAALDPDDPRPYFHAAECL 95 (135)
T ss_pred hHHHHHHHHHHHHHcccHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHH
Confidence 45778999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HhCCChHHHHHHHHHHHHhCCCCHHHH
Q 006120 280 HAMGEDERAIEVFQKAIDLKPGHVDAL 306 (660)
Q Consensus 280 ~~~g~~~~A~~~~~~al~~~p~~~~a~ 306 (660)
...|++++|+..++++++++|++....
T Consensus 96 ~~~g~~~~A~~~~~~al~~~p~~~~~~ 122 (135)
T TIGR02552 96 LALGEPESALKALDLAIEICGENPEYS 122 (135)
T ss_pred HHcCCHHHHHHHHHHHHHhccccchHH
Confidence 999999999999999999999886644
No 96
>KOG0553 consensus TPR repeat-containing protein [General function prediction only]
Probab=99.33 E-value=1.7e-11 Score=118.96 Aligned_cols=117 Identities=32% Similarity=0.335 Sum_probs=76.1
Q ss_pred HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHH
Q 006120 200 LPQIYVNLGIALEGEGMVLSACEYYRESAILCPTHFRALKLLGSALFGVGEYRAAVKALEEAIFIKPDYADAHCDLASAL 279 (660)
Q Consensus 200 ~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~ 279 (660)
.++-+..-|.-+.+.++|.+|+..|.+||+++|.++..|.+.+.+|.++|.++.|++.++.++.++|....+|..||.+|
T Consensus 80 ~AE~LK~eGN~~m~~~~Y~eAv~kY~~AI~l~P~nAVyycNRAAAy~~Lg~~~~AVkDce~Al~iDp~yskay~RLG~A~ 159 (304)
T KOG0553|consen 80 LAESLKNEGNKLMKNKDYQEAVDKYTEAIELDPTNAVYYCNRAAAYSKLGEYEDAVKDCESALSIDPHYSKAYGRLGLAY 159 (304)
T ss_pred HHHHHHHHHHHHHHhhhHHHHHHHHHHHHhcCCCcchHHHHHHHHHHHhcchHHHHHHHHHHHhcChHHHHHHHHHHHHH
Confidence 44555556666666666666666666666666666666666666666666666666666666666666666666666666
Q ss_pred HhCCChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHh
Q 006120 280 HAMGEDERAIEVFQKAIDLKPGHVDALYNLGGLYMDL 316 (660)
Q Consensus 280 ~~~g~~~~A~~~~~~al~~~p~~~~a~~~La~~~~~~ 316 (660)
..+|++++|++.|+++++++|++...+.+|..+-..+
T Consensus 160 ~~~gk~~~A~~aykKaLeldP~Ne~~K~nL~~Ae~~l 196 (304)
T KOG0553|consen 160 LALGKYEEAIEAYKKALELDPDNESYKSNLKIAEQKL 196 (304)
T ss_pred HccCcHHHHHHHHHhhhccCCCcHHHHHHHHHHHHHh
Confidence 6666666666666666666666666555555555544
No 97
>KOG1156 consensus N-terminal acetyltransferase [Chromatin structure and dynamics]
Probab=99.33 E-value=1.1e-09 Score=115.58 Aligned_cols=289 Identities=15% Similarity=0.077 Sum_probs=218.0
Q ss_pred hHhhhcCCcchhhccCchHHHHhccCchhhHHHHHHHHHHHHhhccCCcCCchHHhhhHHHHHHhCCchHHHHhHHHHHH
Q 006120 17 ESQKKQRTAAWAVSPNHGIVFDDTWKIVDDLEILVKRLKAKQAKDGKLKGDNSDAFSDAGWSRELGTSAEISEKRVFWEE 96 (660)
Q Consensus 17 ~~~~~~~p~~~~~~~~lg~~y~~~~~~~~al~~~~~~~~~a~~~~~~l~~~~~~a~~~~~~~~~l~~~~~~~~~~~~l~~ 96 (660)
++.=+..|...++..-.|+.....|+..+|.+.....+.. +..+.-.|-.+|.
T Consensus 31 ~~iL~k~~eHgeslAmkGL~L~~lg~~~ea~~~vr~glr~---------------------------d~~S~vCwHv~gl 83 (700)
T KOG1156|consen 31 KQILKKFPEHGESLAMKGLTLNCLGKKEEAYELVRLGLRN---------------------------DLKSHVCWHVLGL 83 (700)
T ss_pred HHHHHhCCccchhHHhccchhhcccchHHHHHHHHHHhcc---------------------------CcccchhHHHHHH
Confidence 3333467777777778888888888888777777666662 2333445666788
Q ss_pred HHHHHHHHHHHHHHHHHHHhhccCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHH
Q 006120 97 STHDYAVFVKELGVLRNRADGARSREEAFDGHMAIGRVLYEHQLFKEALVSFKRACELQPTDVRPHFRAGNCLYVLGRYR 176 (660)
Q Consensus 97 ~~~~~g~~~~Al~~l~~a~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~ 176 (660)
++....+|.+|++.|+.|+...+++. ..|..++....+.++++-....=.+.++..|..-..|...+..+...|++.
T Consensus 84 ~~R~dK~Y~eaiKcy~nAl~~~~dN~---qilrDlslLQ~QmRd~~~~~~tr~~LLql~~~~ra~w~~~Avs~~L~g~y~ 160 (700)
T KOG1156|consen 84 LQRSDKKYDEAIKCYRNALKIEKDNL---QILRDLSLLQIQMRDYEGYLETRNQLLQLRPSQRASWIGFAVAQHLLGEYK 160 (700)
T ss_pred HHhhhhhHHHHHHHHHHHHhcCCCcH---HHHHHHHHHHHHHHhhhhHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHH
Confidence 88999999999999999999888775 788999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHhccCCCchhch----------------------------------HHHHHHHHHHHHHHCCCHHHHHH
Q 006120 177 EAKEEYLLALEAAETGGNQWAYL----------------------------------LPQIYVNLGIALEGEGMVLSACE 222 (660)
Q Consensus 177 ~A~~~~~~al~~~p~~~~~~~~~----------------------------------~~~~~~~la~~~~~~g~~~~A~~ 222 (660)
.|....+...+......+..... ........|.++..++++++|..
T Consensus 161 ~A~~il~ef~~t~~~~~s~~~~e~se~~Ly~n~i~~E~g~~q~ale~L~~~e~~i~Dkla~~e~ka~l~~kl~~lEeA~~ 240 (700)
T KOG1156|consen 161 MALEILEEFEKTQNTSPSKEDYEHSELLLYQNQILIEAGSLQKALEHLLDNEKQIVDKLAFEETKADLLMKLGQLEEAVK 240 (700)
T ss_pred HHHHHHHHHHHhhccCCCHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHhhhhHHHHHHHHhhhHHHHHHHHhhHHhHHH
Confidence 99999888877653211111000 12233445778888899999999
Q ss_pred HHHHHHHhCCCcHHHHHHHHHHHHHCCCHHHHH-HHHHHHHHhC------------------------------------
Q 006120 223 YYRESAILCPTHFRALKLLGSALFGVGEYRAAV-KALEEAIFIK------------------------------------ 265 (660)
Q Consensus 223 ~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~-~~~~~al~~~------------------------------------ 265 (660)
.|...+..+|++...+..+-.++..-.+-.+++ ..|...-+..
T Consensus 241 ~y~~Ll~rnPdn~~Yy~~l~~~lgk~~d~~~~lk~ly~~ls~~y~r~e~p~Rlplsvl~~eel~~~vdkyL~~~l~Kg~p 320 (700)
T KOG1156|consen 241 VYRRLLERNPDNLDYYEGLEKALGKIKDMLEALKALYAILSEKYPRHECPRRLPLSVLNGEELKEIVDKYLRPLLSKGVP 320 (700)
T ss_pred HHHHHHhhCchhHHHHHHHHHHHHHHhhhHHHHHHHHHHHhhcCcccccchhccHHHhCcchhHHHHHHHHHHHhhcCCC
Confidence 999999999998776655544443111111222 1111110000
Q ss_pred ---------------------------------------------CCCH--HHHHHHHHHHHhCCChHHHHHHHHHHHHh
Q 006120 266 ---------------------------------------------PDYA--DAHCDLASALHAMGEDERAIEVFQKAIDL 298 (660)
Q Consensus 266 ---------------------------------------------p~~~--~~~~~la~~~~~~g~~~~A~~~~~~al~~ 298 (660)
|-.+ ..++.++.-+...|+++.|..+++.|+..
T Consensus 321 ~vf~dl~SLyk~p~k~~~le~Lvt~y~~~L~~~~~f~~~D~~~~E~PttllWt~y~laqh~D~~g~~~~A~~yId~AIdH 400 (700)
T KOG1156|consen 321 SVFKDLRSLYKDPEKVAFLEKLVTSYQHSLSGTGMFNFLDDGKQEPPTTLLWTLYFLAQHYDKLGDYEVALEYIDLAIDH 400 (700)
T ss_pred chhhhhHHHHhchhHhHHHHHHHHHHHhhcccccCCCcccccccCCchHHHHHHHHHHHHHHHcccHHHHHHHHHHHhcc
Confidence 1111 23456788889999999999999999999
Q ss_pred CCCCHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHcccCC
Q 006120 299 KPGHVDALYNLGGLYMDLGAGETEEAKKALKEALKMTNR 337 (660)
Q Consensus 299 ~p~~~~a~~~La~~~~~~~~g~~~eA~~~~~~al~l~p~ 337 (660)
.|..++.+...|.++... |++++|..+++++.+++..
T Consensus 401 TPTliEly~~KaRI~kH~--G~l~eAa~~l~ea~elD~a 437 (700)
T KOG1156|consen 401 TPTLIELYLVKARIFKHA--GLLDEAAAWLDEAQELDTA 437 (700)
T ss_pred CchHHHHHHHHHHHHHhc--CChHHHHHHHHHHHhccch
Confidence 999999999999999998 9999999999999999854
No 98
>KOG1156 consensus N-terminal acetyltransferase [Chromatin structure and dynamics]
Probab=99.33 E-value=2.5e-10 Score=120.48 Aligned_cols=228 Identities=18% Similarity=0.084 Sum_probs=198.8
Q ss_pred HHHHHHHHHHHHHHHHHHHhhccCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHH
Q 006120 97 STHDYAVFVKELGVLRNRADGARSREEAFDGHMAIGRVLYEHQLFKEALVSFKRACELQPTDVRPHFRAGNCLYVLGRYR 176 (660)
Q Consensus 97 ~~~~~g~~~~Al~~l~~a~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~ 176 (660)
-..+.++|.+.++..+..++..+... +.+...|..+...|+-++|..+...++..++.....|..+|.++....+|+
T Consensus 16 k~yE~kQYkkgLK~~~~iL~k~~eHg---eslAmkGL~L~~lg~~~ea~~~vr~glr~d~~S~vCwHv~gl~~R~dK~Y~ 92 (700)
T KOG1156|consen 16 KCYETKQYKKGLKLIKQILKKFPEHG---ESLAMKGLTLNCLGKKEEAYELVRLGLRNDLKSHVCWHVLGLLQRSDKKYD 92 (700)
T ss_pred HHHHHHHHHhHHHHHHHHHHhCCccc---hhHHhccchhhcccchHHHHHHHHHHhccCcccchhHHHHHHHHhhhhhHH
Confidence 45788999999999999999777765 777889999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHhccCCCchhchHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHCCCHHHHHH
Q 006120 177 EAKEEYLLALEAAETGGNQWAYLLPQIYVNLGIALEGEGMVLSACEYYRESAILCPTHFRALKLLGSALFGVGEYRAAVK 256 (660)
Q Consensus 177 ~A~~~~~~al~~~p~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~ 256 (660)
+|+++|+.|+.+.|+ +..++..++.+..++++++.....-.+.+++.|..-..|..++..+...|++..|..
T Consensus 93 eaiKcy~nAl~~~~d--------N~qilrDlslLQ~QmRd~~~~~~tr~~LLql~~~~ra~w~~~Avs~~L~g~y~~A~~ 164 (700)
T KOG1156|consen 93 EAIKCYRNALKIEKD--------NLQILRDLSLLQIQMRDYEGYLETRNQLLQLRPSQRASWIGFAVAQHLLGEYKMALE 164 (700)
T ss_pred HHHHHHHHHHhcCCC--------cHHHHHHHHHHHHHHHhhhhHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHH
Confidence 999999999999999 889999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHhC---CCC-----HHHHHHHHHHHHhCCChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCCCHHHHHHHH
Q 006120 257 ALEEAIFIK---PDY-----ADAHCDLASALHAMGEDERAIEVFQKAIDLKPGHVDALYNLGGLYMDLGAGETEEAKKAL 328 (660)
Q Consensus 257 ~~~~al~~~---p~~-----~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~La~~~~~~~~g~~~eA~~~~ 328 (660)
.++...... |.. .........+..+.|.+++|.+.+.+--..--+........+.++..+ +++++|...|
T Consensus 165 il~ef~~t~~~~~s~~~~e~se~~Ly~n~i~~E~g~~q~ale~L~~~e~~i~Dkla~~e~ka~l~~kl--~~lEeA~~~y 242 (700)
T KOG1156|consen 165 ILEEFEKTQNTSPSKEDYEHSELLLYQNQILIEAGSLQKALEHLLDNEKQIVDKLAFEETKADLLMKL--GQLEEAVKVY 242 (700)
T ss_pred HHHHHHHhhccCCCHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHhhhhHHHHHHHHhhhHHHHHHHH--hhHHhHHHHH
Confidence 988877665 322 234445566777888888888777654433333445566788889988 9999999999
Q ss_pred HHHHcccCC
Q 006120 329 KEALKMTNR 337 (660)
Q Consensus 329 ~~al~l~p~ 337 (660)
...+..+|+
T Consensus 243 ~~Ll~rnPd 251 (700)
T KOG1156|consen 243 RRLLERNPD 251 (700)
T ss_pred HHHHhhCch
Confidence 999999987
No 99
>PLN03081 pentatricopeptide (PPR) repeat-containing protein; Provisional
Probab=99.32 E-value=6.1e-10 Score=128.58 Aligned_cols=287 Identities=13% Similarity=-0.024 Sum_probs=199.3
Q ss_pred chhhccCchHHHHhccCchhhHHHHHHHHHHHHhhccCCcCCchHHhhhHHHH-----------------HHhCCchHHH
Q 006120 26 AWAVSPNHGIVFDDTWKIVDDLEILVKRLKAKQAKDGKLKGDNSDAFSDAGWS-----------------RELGTSAEIS 88 (660)
Q Consensus 26 ~~~~~~~lg~~y~~~~~~~~al~~~~~~~~~a~~~~~~l~~~~~~a~~~~~~~-----------------~~l~~~~~~~ 88 (660)
+..+|+.+...|.+.|++.++++.+.+..+.. ..++ ...+..+... ...+.. ...
T Consensus 188 ~~~t~n~li~~~~~~g~~~~A~~lf~~M~~~g------~~p~-~~t~~~ll~a~~~~~~~~~~~~l~~~~~~~g~~-~d~ 259 (697)
T PLN03081 188 NLASWGTIIGGLVDAGNYREAFALFREMWEDG------SDAE-PRTFVVMLRASAGLGSARAGQQLHCCVLKTGVV-GDT 259 (697)
T ss_pred CeeeHHHHHHHHHHCcCHHHHHHHHHHHHHhC------CCCC-hhhHHHHHHHHhcCCcHHHHHHHHHHHHHhCCC-ccc
Confidence 34456667777777777777777777766521 1111 1111111100 000101 112
Q ss_pred HhHHHHHHHHHHHHHHHHHHHHHHHHHhhccCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHH
Q 006120 89 EKRVFWEESTHDYAVFVKELGVLRNRADGARSREEAFDGHMAIGRVLYEHQLFKEALVSFKRACELQ-PTDVRPHFRAGN 167 (660)
Q Consensus 89 ~~~~~l~~~~~~~g~~~~Al~~l~~a~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~la~ 167 (660)
..+..+...+...|++++|...+++.... ....|..+...|.+.|++++|+..|++..+.. ..+...+..+..
T Consensus 260 ~~~n~Li~~y~k~g~~~~A~~vf~~m~~~------~~vt~n~li~~y~~~g~~~eA~~lf~~M~~~g~~pd~~t~~~ll~ 333 (697)
T PLN03081 260 FVSCALIDMYSKCGDIEDARCVFDGMPEK------TTVAWNSMLAGYALHGYSEEALCLYYEMRDSGVSIDQFTFSIMIR 333 (697)
T ss_pred eeHHHHHHHHHHCCCHHHHHHHHHhCCCC------ChhHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHH
Confidence 23344566778888888888888765321 23678888888999999999999998887653 225667888888
Q ss_pred HHHHcCCHHHHHHHHHHHHHHhccCCCchhchHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHH
Q 006120 168 CLYVLGRYREAKEEYLLALEAAETGGNQWAYLLPQIYVNLGIALEGEGMVLSACEYYRESAILCPTHFRALKLLGSALFG 247 (660)
Q Consensus 168 ~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~ 247 (660)
++...|++++|.+.+..+++..... ...++..+...|.+.|++++|...|++..+ .+...|+.+...|.+
T Consensus 334 a~~~~g~~~~a~~i~~~m~~~g~~~-------d~~~~~~Li~~y~k~G~~~~A~~vf~~m~~---~d~~t~n~lI~~y~~ 403 (697)
T PLN03081 334 IFSRLALLEHAKQAHAGLIRTGFPL-------DIVANTALVDLYSKWGRMEDARNVFDRMPR---KNLISWNALIAGYGN 403 (697)
T ss_pred HHHhccchHHHHHHHHHHHHhCCCC-------CeeehHHHHHHHHHCCCHHHHHHHHHhCCC---CCeeeHHHHHHHHHH
Confidence 8888999999999888888775332 456777888888889999999998887643 356678888888999
Q ss_pred CCCHHHHHHHHHHHHHhC--CCCHHHHHHHHHHHHhCCChHHHHHHHHHHHHhCC--CCHHHHHHHHHHHHHhcCCCHHH
Q 006120 248 VGEYRAAVKALEEAIFIK--PDYADAHCDLASALHAMGEDERAIEVFQKAIDLKP--GHVDALYNLGGLYMDLGAGETEE 323 (660)
Q Consensus 248 ~g~~~~A~~~~~~al~~~--p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p--~~~~a~~~La~~~~~~~~g~~~e 323 (660)
.|+.++|++.|++..+.. | +...+..+...+...|+.++|..+|+...+..+ .+...|..+..+|.+. |++++
T Consensus 404 ~G~~~~A~~lf~~M~~~g~~P-d~~T~~~ll~a~~~~g~~~~a~~~f~~m~~~~g~~p~~~~y~~li~~l~r~--G~~~e 480 (697)
T PLN03081 404 HGRGTKAVEMFERMIAEGVAP-NHVTFLAVLSACRYSGLSEQGWEIFQSMSENHRIKPRAMHYACMIELLGRE--GLLDE 480 (697)
T ss_pred cCCHHHHHHHHHHHHHhCCCC-CHHHHHHHHHHHhcCCcHHHHHHHHHHHHHhcCCCCCccchHhHHHHHHhc--CCHHH
Confidence 999999999998887653 4 356677777888888999999999988876432 2345778888888887 89999
Q ss_pred HHHHHHHHHcccCChhH
Q 006120 324 AKKALKEALKMTNRVEL 340 (660)
Q Consensus 324 A~~~~~~al~l~p~~~~ 340 (660)
|.+.+++. ...|+...
T Consensus 481 A~~~~~~~-~~~p~~~~ 496 (697)
T PLN03081 481 AYAMIRRA-PFKPTVNM 496 (697)
T ss_pred HHHHHHHC-CCCCCHHH
Confidence 98888764 34455443
No 100
>KOG1127 consensus TPR repeat-containing protein [RNA processing and modification]
Probab=99.31 E-value=6.8e-11 Score=129.50 Aligned_cols=304 Identities=15% Similarity=0.129 Sum_probs=212.9
Q ss_pred hhcCCcchhhccCchHHHHhccCchhhHHHHHHHHHHHHhhccCCcCCchHHh-----------------hhHHHHHHhC
Q 006120 20 KKQRTAAWAVSPNHGIVFDDTWKIVDDLEILVKRLKAKQAKDGKLKGDNSDAF-----------------SDAGWSRELG 82 (660)
Q Consensus 20 ~~~~p~~~~~~~~lg~~y~~~~~~~~al~~~~~~~~~a~~~~~~l~~~~~~a~-----------------~~~~~~~~l~ 82 (660)
.+-||+.+.++..+|.+|...-+...|..-+.++.+ +++....+- .......+..
T Consensus 485 lrld~~~apaf~~LG~iYrd~~Dm~RA~kCf~KAFe--------LDatdaeaaaa~adtyae~~~we~a~~I~l~~~qka 556 (1238)
T KOG1127|consen 485 LRLDVSLAPAFAFLGQIYRDSDDMKRAKKCFDKAFE--------LDATDAEAAAASADTYAEESTWEEAFEICLRAAQKA 556 (1238)
T ss_pred HhcccchhHHHHHHHHHHHHHHHHHHHHHHHHHHhc--------CCchhhhhHHHHHHHhhccccHHHHHHHHHHHhhhc
Confidence 345899999999999999988655556655655555 222211111 1111111112
Q ss_pred CchHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHhhccCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHH
Q 006120 83 TSAEISEKRVFWEESTHDYAVFVKELGVLRNRADGARSREEAFDGHMAIGRVLYEHQLFKEALVSFKRACELQPTDVRPH 162 (660)
Q Consensus 83 ~~~~~~~~~~~l~~~~~~~g~~~~Al~~l~~a~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~ 162 (660)
........+...|..+.+-+++.+++..++.++...|. .+..|..+|.+|...|.+..|++.|.++..++|.+..+.
T Consensus 557 ~a~~~k~nW~~rG~yyLea~n~h~aV~~fQsALR~dPk---D~n~W~gLGeAY~~sGry~~AlKvF~kAs~LrP~s~y~~ 633 (1238)
T KOG1127|consen 557 PAFACKENWVQRGPYYLEAHNLHGAVCEFQSALRTDPK---DYNLWLGLGEAYPESGRYSHALKVFTKASLLRPLSKYGR 633 (1238)
T ss_pred hHHHHHhhhhhccccccCccchhhHHHHHHHHhcCCch---hHHHHHHHHHHHHhcCceehHHHhhhhhHhcCcHhHHHH
Confidence 22223355666788888999999999999999875554 468999999999999999999999999999999999999
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHHhccCCCchhchHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh------------
Q 006120 163 FRAGNCLYVLGRYREAKEEYLLALEAAETGGNQWAYLLPQIYVNLGIALEGEGMVLSACEYYRESAIL------------ 230 (660)
Q Consensus 163 ~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~------------ 230 (660)
+..+.+....|+|.+|+..+...+........... -.++.+..++..+...|-+.+|..+++++++.
T Consensus 634 fk~A~~ecd~GkYkeald~l~~ii~~~s~e~~~q~-gLaE~~ir~akd~~~~gf~~kavd~~eksie~f~~~l~h~~~~~ 712 (1238)
T KOG1127|consen 634 FKEAVMECDNGKYKEALDALGLIIYAFSLERTGQN-GLAESVIRDAKDSAITGFQKKAVDFFEKSIESFIVSLIHSLQSD 712 (1238)
T ss_pred HHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHhhh-hHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHhhhhh
Confidence 99999999999999999999888766443211110 04556666666666666555665555555321
Q ss_pred -----------------CCC-----------------------------------------cHHHHHHHHHHHHH-----
Q 006120 231 -----------------CPT-----------------------------------------HFRALKLLGSALFG----- 247 (660)
Q Consensus 231 -----------------~p~-----------------------------------------~~~~~~~lg~~~~~----- 247 (660)
.|+ ++..|+++|..|++
T Consensus 713 ~~~Wi~asdac~~f~q~e~~~vn~h~l~il~~q~e~~~~l~~~d~l~Lg~~c~~~hlsl~~~~~~WyNLGinylr~f~~l 792 (1238)
T KOG1127|consen 713 RLQWIVASDACYIFSQEEPSIVNMHYLIILSKQLEKTGALKKNDLLFLGYECGIAHLSLAIHMYPWYNLGINYLRYFLLL 792 (1238)
T ss_pred HHHHHHHhHHHHHHHHhcccchHHHHHHHHHHHHHhcccCcchhHHHHHHHHhhHHHHHhhccchHHHHhHHHHHHHHHc
Confidence 011 12247777776665
Q ss_pred ---CCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhCCChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCCCHHHH
Q 006120 248 ---VGEYRAAVKALEEAIFIKPDYADAHCDLASALHAMGEDERAIEVFQKAIDLKPGHVDALYNLGGLYMDLGAGETEEA 324 (660)
Q Consensus 248 ---~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~La~~~~~~~~g~~~eA 324 (660)
+.+...|+.++.+++++..++...|+.||.+ ...|++.-|..+|-+.+...|.....|.++|.++... .+++-|
T Consensus 793 ~et~~~~~~Ai~c~KkaV~L~ann~~~WnaLGVl-sg~gnva~aQHCfIks~~sep~~~~~W~NlgvL~l~n--~d~E~A 869 (1238)
T KOG1127|consen 793 GETMKDACTAIRCCKKAVSLCANNEGLWNALGVL-SGIGNVACAQHCFIKSRFSEPTCHCQWLNLGVLVLEN--QDFEHA 869 (1238)
T ss_pred CCcchhHHHHHHHHHHHHHHhhccHHHHHHHHHh-hccchhhhhhhhhhhhhhccccchhheeccceeEEec--ccHHHh
Confidence 2233467788888888888877888888777 5567777788888888888888777888888877776 778888
Q ss_pred HHHHHHHHcccCCh
Q 006120 325 KKALKEALKMTNRV 338 (660)
Q Consensus 325 ~~~~~~al~l~p~~ 338 (660)
...+.++..++|..
T Consensus 870 ~~af~~~qSLdP~n 883 (1238)
T KOG1127|consen 870 EPAFSSVQSLDPLN 883 (1238)
T ss_pred hHHHHhhhhcCchh
Confidence 88888888777763
No 101
>PRK14720 transcript cleavage factor/unknown domain fusion protein; Provisional
Probab=99.31 E-value=4.4e-10 Score=127.05 Aligned_cols=237 Identities=12% Similarity=0.115 Sum_probs=177.8
Q ss_pred CCchHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHhhccCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCH--
Q 006120 82 GTSAEISEKRVFWEESTHDYAVFVKELGVLRNRADGARSREEAFDGHMAIGRVLYEHQLFKEALVSFKRACELQPTDV-- 159 (660)
Q Consensus 82 ~~~~~~~~~~~~l~~~~~~~g~~~~Al~~l~~a~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~-- 159 (660)
..++....++..+...+...+++++++..+.++++..|+. ...++.+|.++++.+++.++... .++...+.+.
T Consensus 25 ~~~p~n~~a~~~Li~~~~~~~~~deai~i~~~~l~~~P~~---i~~yy~~G~l~~q~~~~~~~~lv--~~l~~~~~~~~~ 99 (906)
T PRK14720 25 NYSLSKFKELDDLIDAYKSENLTDEAKDICEEHLKEHKKS---ISALYISGILSLSRRPLNDSNLL--NLIDSFSQNLKW 99 (906)
T ss_pred cCCcchHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCcc---eehHHHHHHHHHhhcchhhhhhh--hhhhhcccccch
Confidence 4566777778888888888888888888888877766655 47788888888888887777666 6666555444
Q ss_pred -----------------HHHHHHHHHHHHcCCHHHHHHHHHHHHHHhccCCCchhchHHHHHHHHHHHHHHCCCHHHHHH
Q 006120 160 -----------------RPHFRAGNCLYVLGRYREAKEEYLLALEAAETGGNQWAYLLPQIYVNLGIALEGEGMVLSACE 222 (660)
Q Consensus 160 -----------------~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~ 222 (660)
.+++.+|.||-.+|+.++|...|+++++++|+ .+.++.++|..|... +.++|++
T Consensus 100 ~~ve~~~~~i~~~~~~k~Al~~LA~~Ydk~g~~~ka~~~yer~L~~D~~--------n~~aLNn~AY~~ae~-dL~KA~~ 170 (906)
T PRK14720 100 AIVEHICDKILLYGENKLALRTLAEAYAKLNENKKLKGVWERLVKADRD--------NPEIVKKLATSYEEE-DKEKAIT 170 (906)
T ss_pred hHHHHHHHHHHhhhhhhHHHHHHHHHHHHcCChHHHHHHHHHHHhcCcc--------cHHHHHHHHHHHHHh-hHHHHHH
Confidence 78888888888888888888888888888887 788888888888888 8888888
Q ss_pred HHHHHHHhCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHH--------------------HHHHHHHHHhC
Q 006120 223 YYRESAILCPTHFRALKLLGSALFGVGEYRAAVKALEEAIFIKPDYADA--------------------HCDLASALHAM 282 (660)
Q Consensus 223 ~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~--------------------~~~la~~~~~~ 282 (660)
++.+|+.. +...+++.++..+..+.+..+|++... +.-+-..|...
T Consensus 171 m~~KAV~~--------------~i~~kq~~~~~e~W~k~~~~~~~d~d~f~~i~~ki~~~~~~~~~~~~~~~l~~~y~~~ 236 (906)
T PRK14720 171 YLKKAIYR--------------FIKKKQYVGIEEIWSKLVHYNSDDFDFFLRIERKVLGHREFTRLVGLLEDLYEPYKAL 236 (906)
T ss_pred HHHHHHHH--------------HHhhhcchHHHHHHHHHHhcCcccchHHHHHHHHHHhhhccchhHHHHHHHHHHHhhh
Confidence 88888775 555567777777777777777776443 22333778889
Q ss_pred CChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHccc---CC-hhHHHHHHHHHHHH
Q 006120 283 GEDERAIEVFQKAIDLKPGHVDALYNLGGLYMDLGAGETEEAKKALKEALKMT---NR-VELHDAVSHLKQLQ 351 (660)
Q Consensus 283 g~~~~A~~~~~~al~~~p~~~~a~~~La~~~~~~~~g~~~eA~~~~~~al~l~---p~-~~~~~~~~~l~~l~ 351 (660)
+++++++.+++.+++++|.+..+...++.+|... |.. ...++..+++. .. .....++..++...
T Consensus 237 ~~~~~~i~iLK~iL~~~~~n~~a~~~l~~~y~~k----Y~~-~~~~ee~l~~s~l~~~~~~~~~~i~~fek~i 304 (906)
T PRK14720 237 EDWDEVIYILKKILEHDNKNNKAREELIRFYKEK----YKD-HSLLEDYLKMSDIGNNRKPVKDCIADFEKNI 304 (906)
T ss_pred hhhhHHHHHHHHHHhcCCcchhhHHHHHHHHHHH----ccC-cchHHHHHHHhccccCCccHHHHHHHHHHHe
Confidence 9999999999999999999999999999999854 222 33444444433 22 34455666655443
No 102
>KOG0553 consensus TPR repeat-containing protein [General function prediction only]
Probab=99.29 E-value=5.4e-11 Score=115.45 Aligned_cols=121 Identities=23% Similarity=0.240 Sum_probs=97.6
Q ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhccCCCchhchHHHH
Q 006120 124 AFDGHMAIGRVLYEHQLFKEALVSFKRACELQPTDVRPHFRAGNCLYVLGRYREAKEEYLLALEAAETGGNQWAYLLPQI 203 (660)
Q Consensus 124 ~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~ 203 (660)
.++-+-.-|.-+++.++|.+|+..|.+||+++|.++..|.+.|.+|.++|.++.|++.++.++.++|. ...+
T Consensus 80 ~AE~LK~eGN~~m~~~~Y~eAv~kY~~AI~l~P~nAVyycNRAAAy~~Lg~~~~AVkDce~Al~iDp~--------yska 151 (304)
T KOG0553|consen 80 LAESLKNEGNKLMKNKDYQEAVDKYTEAIELDPTNAVYYCNRAAAYSKLGEYEDAVKDCESALSIDPH--------YSKA 151 (304)
T ss_pred HHHHHHHHHHHHHHhhhHHHHHHHHHHHHhcCCCcchHHHHHHHHHHHhcchHHHHHHHHHHHhcChH--------HHHH
Confidence 34556677888888888888888888888888888888888888888888888888888888888888 7888
Q ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHCCCHH
Q 006120 204 YVNLGIALEGEGMVLSACEYYRESAILCPTHFRALKLLGSALFGVGEYR 252 (660)
Q Consensus 204 ~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~ 252 (660)
|..||.+|..+|++.+|++.|+++|+++|++...+.+|..+-.+.++..
T Consensus 152 y~RLG~A~~~~gk~~~A~~aykKaLeldP~Ne~~K~nL~~Ae~~l~e~~ 200 (304)
T KOG0553|consen 152 YGRLGLAYLALGKYEEAIEAYKKALELDPDNESYKSNLKIAEQKLNEPK 200 (304)
T ss_pred HHHHHHHHHccCcHHHHHHHHHhhhccCCCcHHHHHHHHHHHHHhcCCC
Confidence 8888888888888888888888888888888877777766666555544
No 103
>PRK14720 transcript cleavage factor/unknown domain fusion protein; Provisional
Probab=99.26 E-value=3.1e-10 Score=128.27 Aligned_cols=200 Identities=12% Similarity=0.013 Sum_probs=169.2
Q ss_pred CcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhccCCCchh--
Q 006120 120 SREEAFDGHMAIGRVLYEHQLFKEALVSFKRACELQPTDVRPHFRAGNCLYVLGRYREAKEEYLLALEAAETGGNQWA-- 197 (660)
Q Consensus 120 ~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~-- 197 (660)
-.+....++..++..+...+++++|+..++.+++..|+....++.+|.++.+.+++.++... .++...+.......
T Consensus 26 ~~p~n~~a~~~Li~~~~~~~~~deai~i~~~~l~~~P~~i~~yy~~G~l~~q~~~~~~~~lv--~~l~~~~~~~~~~~ve 103 (906)
T PRK14720 26 YSLSKFKELDDLIDAYKSENLTDEAKDICEEHLKEHKKSISALYISGILSLSRRPLNDSNLL--NLIDSFSQNLKWAIVE 103 (906)
T ss_pred CCcchHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCcceehHHHHHHHHHhhcchhhhhhh--hhhhhcccccchhHHH
Confidence 45566799999999999999999999999999999999999999999999999999988777 77777665431100
Q ss_pred ---------chHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCC
Q 006120 198 ---------YLLPQIYVNLGIALEGEGMVLSACEYYRESAILCPTHFRALKLLGSALFGVGEYRAAVKALEEAIFIKPDY 268 (660)
Q Consensus 198 ---------~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~ 268 (660)
.....+++.+|.+|.++|++++|...|+++++++|+++.+++++|..|... +.++|+.++.+|+..
T Consensus 104 ~~~~~i~~~~~~k~Al~~LA~~Ydk~g~~~ka~~~yer~L~~D~~n~~aLNn~AY~~ae~-dL~KA~~m~~KAV~~---- 178 (906)
T PRK14720 104 HICDKILLYGENKLALRTLAEAYAKLNENKKLKGVWERLVKADRDNPEIVKKLATSYEEE-DKEKAITYLKKAIYR---- 178 (906)
T ss_pred HHHHHHHhhhhhhHHHHHHHHHHHHcCChHHHHHHHHHHHhcCcccHHHHHHHHHHHHHh-hHHHHHHHHHHHHHH----
Confidence 002368899999999999999999999999999999999999999999999 999999999999987
Q ss_pred HHHHHHHHHHHHhCCChHHHHHHHHHHHHhCCCCHHHH--------------------HHHHHHHHHhcCCCHHHHHHHH
Q 006120 269 ADAHCDLASALHAMGEDERAIEVFQKAIDLKPGHVDAL--------------------YNLGGLYMDLGAGETEEAKKAL 328 (660)
Q Consensus 269 ~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~a~--------------------~~La~~~~~~~~g~~~eA~~~~ 328 (660)
+...+++.++..++.+.+..+|++.+.+ .-+-..|... +++++++..+
T Consensus 179 ----------~i~~kq~~~~~e~W~k~~~~~~~d~d~f~~i~~ki~~~~~~~~~~~~~~~l~~~y~~~--~~~~~~i~iL 246 (906)
T PRK14720 179 ----------FIKKKQYVGIEEIWSKLVHYNSDDFDFFLRIERKVLGHREFTRLVGLLEDLYEPYKAL--EDWDEVIYIL 246 (906)
T ss_pred ----------HHhhhcchHHHHHHHHHHhcCcccchHHHHHHHHHHhhhccchhHHHHHHHHHHHhhh--hhhhHHHHHH
Confidence 6667788899999999998888875532 2222556666 8999999999
Q ss_pred HHHHcccCCh
Q 006120 329 KEALKMTNRV 338 (660)
Q Consensus 329 ~~al~l~p~~ 338 (660)
+.+|+++|..
T Consensus 247 K~iL~~~~~n 256 (906)
T PRK14720 247 KKILEHDNKN 256 (906)
T ss_pred HHHHhcCCcc
Confidence 9999999873
No 104
>KOG1128 consensus Uncharacterized conserved protein, contains TPR repeats [General function prediction only]
Probab=99.25 E-value=1.2e-10 Score=124.54 Aligned_cols=239 Identities=15% Similarity=0.081 Sum_probs=191.9
Q ss_pred CCcchhhccCchHHHHhccCchhhHHHHHHHHHHHHhhccCCcCCchHHhhhHHHHHHhCCchHHHHhHHHHHHHHHHHH
Q 006120 23 RTAAWAVSPNHGIVFDDTWKIVDDLEILVKRLKAKQAKDGKLKGDNSDAFSDAGWSRELGTSAEISEKRVFWEESTHDYA 102 (660)
Q Consensus 23 ~p~~~~~~~~lg~~y~~~~~~~~al~~~~~~~~~a~~~~~~l~~~~~~a~~~~~~~~~l~~~~~~~~~~~~l~~~~~~~g 102 (660)
-|+.|..-..++-.+...|....|+..+++-.- +-....+|...|
T Consensus 394 lpp~Wq~q~~laell~slGitksAl~I~Erlem-----------------------------------w~~vi~CY~~lg 438 (777)
T KOG1128|consen 394 LPPIWQLQRLLAELLLSLGITKSALVIFERLEM-----------------------------------WDPVILCYLLLG 438 (777)
T ss_pred CCCcchHHHHHHHHHHHcchHHHHHHHHHhHHH-----------------------------------HHHHHHHHHHhc
Confidence 456666667777777777777777766655443 222245677788
Q ss_pred HHHHHHHHHHHHHhhccCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHH
Q 006120 103 VFVKELGVLRNRADGARSREEAFDGHMAIGRVLYEHQLFKEALVSFKRACELQPTDVRPHFRAGNCLYVLGRYREAKEEY 182 (660)
Q Consensus 103 ~~~~Al~~l~~a~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~ 182 (660)
+-.+|.....+.+++.+++ ..|..+|.+....--|++|.++.+.. ++.+...+|......++|.++.+.+
T Consensus 439 ~~~kaeei~~q~lek~~d~----~lyc~LGDv~~d~s~yEkawElsn~~------sarA~r~~~~~~~~~~~fs~~~~hl 508 (777)
T KOG1128|consen 439 QHGKAEEINRQELEKDPDP----RLYCLLGDVLHDPSLYEKAWELSNYI------SARAQRSLALLILSNKDFSEADKHL 508 (777)
T ss_pred ccchHHHHHHHHhcCCCcc----hhHHHhhhhccChHHHHHHHHHhhhh------hHHHHHhhccccccchhHHHHHHHH
Confidence 8889988888888744433 56666776666665556655555442 4567788888888899999999999
Q ss_pred HHHHHHhccCCCchhchHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHH
Q 006120 183 LLALEAAETGGNQWAYLLPQIYVNLGIALEGEGMVLSACEYYRESAILCPTHFRALKLLGSALFGVGEYRAAVKALEEAI 262 (660)
Q Consensus 183 ~~al~~~p~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al 262 (660)
+..++++|- ....|+.+|.+..+.++++.|..+|.+++.++|++..+|++++..|...++..+|...+++|+
T Consensus 509 e~sl~~npl--------q~~~wf~~G~~ALqlek~q~av~aF~rcvtL~Pd~~eaWnNls~ayi~~~~k~ra~~~l~EAl 580 (777)
T KOG1128|consen 509 ERSLEINPL--------QLGTWFGLGCAALQLEKEQAAVKAFHRCVTLEPDNAEAWNNLSTAYIRLKKKKRAFRKLKEAL 580 (777)
T ss_pred HHHhhcCcc--------chhHHHhccHHHHHHhhhHHHHHHHHHHhhcCCCchhhhhhhhHHHHHHhhhHHHHHHHHHHh
Confidence 999999998 889999999999999999999999999999999999999999999999999999999999999
Q ss_pred HhCCCCHHHHHHHHHHHHhCCChHHHHHHHHHHHHhCCC--CHHHHHHHHHHHH
Q 006120 263 FIKPDYADAHCDLASALHAMGEDERAIEVFQKAIDLKPG--HVDALYNLGGLYM 314 (660)
Q Consensus 263 ~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~--~~~a~~~La~~~~ 314 (660)
+.+-+++.+|-|.-.+....|.+++|+..+.+.+.+... +......+.....
T Consensus 581 Kcn~~~w~iWENymlvsvdvge~eda~~A~~rll~~~~~~~d~~vl~~iv~~~~ 634 (777)
T KOG1128|consen 581 KCNYQHWQIWENYMLVSVDVGEFEDAIKAYHRLLDLRKKYKDDEVLLIIVRTVL 634 (777)
T ss_pred hcCCCCCeeeechhhhhhhcccHHHHHHHHHHHHHhhhhcccchhhHHHHHHHH
Confidence 999999999999999999999999999999999877432 3444444444433
No 105
>PLN03077 Protein ECB2; Provisional
Probab=99.25 E-value=1.5e-09 Score=128.37 Aligned_cols=191 Identities=19% Similarity=0.142 Sum_probs=156.2
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhccCCCchhchHHHHHHHHH
Q 006120 129 MAIGRVLYEHQLFKEALVSFKRACELQPTDVRPHFRAGNCLYVLGRYREAKEEYLLALEAAETGGNQWAYLLPQIYVNLG 208 (660)
Q Consensus 129 ~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~la 208 (660)
..+...|.+.|++++|...|+.. +.+...|..+...|...|+.++|++.|++..+..... ...++..+-
T Consensus 528 naLi~~y~k~G~~~~A~~~f~~~----~~d~~s~n~lI~~~~~~G~~~~A~~lf~~M~~~g~~P-------d~~T~~~ll 596 (857)
T PLN03077 528 NALLDLYVRCGRMNYAWNQFNSH----EKDVVSWNILLTGYVAHGKGSMAVELFNRMVESGVNP-------DEVTFISLL 596 (857)
T ss_pred hHHHHHHHHcCCHHHHHHHHHhc----CCChhhHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCC-------CcccHHHHH
Confidence 34557788889999999888876 4567889999999999999999999999988753322 234566666
Q ss_pred HHHHHCCCHHHHHHHHHHHHHhCC--CcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhCCChH
Q 006120 209 IALEGEGMVLSACEYYRESAILCP--THFRALKLLGSALFGVGEYRAAVKALEEAIFIKPDYADAHCDLASALHAMGEDE 286 (660)
Q Consensus 209 ~~~~~~g~~~~A~~~~~~al~~~p--~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~ 286 (660)
..+...|++++|..+|+...+..+ .+...|..+..++.+.|++++|.+.+++. .+.|+ ..+|..|-..+...|+.+
T Consensus 597 ~a~~~~g~v~ea~~~f~~M~~~~gi~P~~~~y~~lv~~l~r~G~~~eA~~~~~~m-~~~pd-~~~~~aLl~ac~~~~~~e 674 (857)
T PLN03077 597 CACSRSGMVTQGLEYFHSMEEKYSITPNLKHYACVVDLLGRAGKLTEAYNFINKM-PITPD-PAVWGALLNACRIHRHVE 674 (857)
T ss_pred HHHhhcChHHHHHHHHHHHHHHhCCCCchHHHHHHHHHHHhCCCHHHHHHHHHHC-CCCCC-HHHHHHHHHHHHHcCChH
Confidence 778889999999999999874422 23578888999999999999999999875 35554 677888777888899999
Q ss_pred HHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHcc
Q 006120 287 RAIEVFQKAIDLKPGHVDALYNLGGLYMDLGAGETEEAKKALKEALKM 334 (660)
Q Consensus 287 ~A~~~~~~al~~~p~~~~a~~~La~~~~~~~~g~~~eA~~~~~~al~l 334 (660)
.|....++++++.|++...+..|+.+|... |++++|.+..+...+.
T Consensus 675 ~~e~~a~~l~~l~p~~~~~y~ll~n~ya~~--g~~~~a~~vr~~M~~~ 720 (857)
T PLN03077 675 LGELAAQHIFELDPNSVGYYILLCNLYADA--GKWDEVARVRKTMREN 720 (857)
T ss_pred HHHHHHHHHHhhCCCCcchHHHHHHHHHHC--CChHHHHHHHHHHHHc
Confidence 999999999999999999999999999988 9999999998877654
No 106
>PRK15363 pathogenicity island 2 chaperone protein SscA; Provisional
Probab=99.24 E-value=2.4e-10 Score=102.10 Aligned_cols=104 Identities=18% Similarity=0.143 Sum_probs=84.1
Q ss_pred hC-CCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhCCChHHHHHHHHHHHHhCCCCHHHHHH
Q 006120 230 LC-PTHFRALKLLGSALFGVGEYRAAVKALEEAIFIKPDYADAHCDLASALHAMGEDERAIEVFQKAIDLKPGHVDALYN 308 (660)
Q Consensus 230 ~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~ 308 (660)
+. ++.-+..+.+|..+...|++++|...|+-...++|.+...|++||.++..+|++++|+..|.+++.++|+++.++.+
T Consensus 29 ~~~~~~l~~lY~~A~~ly~~G~l~~A~~~f~~L~~~Dp~~~~y~~gLG~~~Q~~g~~~~AI~aY~~A~~L~~ddp~~~~~ 108 (157)
T PRK15363 29 DDVTQPLNTLYRYAMQLMEVKEFAGAARLFQLLTIYDAWSFDYWFRLGECCQAQKHWGEAIYAYGRAAQIKIDAPQAPWA 108 (157)
T ss_pred CChHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCCCchHHHH
Confidence 45 56667777788888888888888888888888888888888888888888888888888888888888888888888
Q ss_pred HHHHHHHhcCCCHHHHHHHHHHHHccc
Q 006120 309 LGGLYMDLGAGETEEAKKALKEALKMT 335 (660)
Q Consensus 309 La~~~~~~~~g~~~eA~~~~~~al~l~ 335 (660)
+|.++... |+.+.|++.|+.++...
T Consensus 109 ag~c~L~l--G~~~~A~~aF~~Ai~~~ 133 (157)
T PRK15363 109 AAECYLAC--DNVCYAIKALKAVVRIC 133 (157)
T ss_pred HHHHHHHc--CCHHHHHHHHHHHHHHh
Confidence 88888877 88888888888888776
No 107
>PRK15363 pathogenicity island 2 chaperone protein SscA; Provisional
Probab=99.23 E-value=3.8e-10 Score=100.82 Aligned_cols=101 Identities=17% Similarity=0.077 Sum_probs=97.7
Q ss_pred HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHH
Q 006120 200 LPQIYVNLGIALEGEGMVLSACEYYRESAILCPTHFRALKLLGSALFGVGEYRAAVKALEEAIFIKPDYADAHCDLASAL 279 (660)
Q Consensus 200 ~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~ 279 (660)
.-+..+.+|..+...|++++|...|+-...++|.+...|++||.++..+|++++|+..|.+++.++|+++.+++++|.++
T Consensus 34 ~l~~lY~~A~~ly~~G~l~~A~~~f~~L~~~Dp~~~~y~~gLG~~~Q~~g~~~~AI~aY~~A~~L~~ddp~~~~~ag~c~ 113 (157)
T PRK15363 34 PLNTLYRYAMQLMEVKEFAGAARLFQLLTIYDAWSFDYWFRLGECCQAQKHWGEAIYAYGRAAQIKIDAPQAPWAAAECY 113 (157)
T ss_pred HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCCCchHHHHHHHHH
Confidence 56778899999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HhCCChHHHHHHHHHHHHhCC
Q 006120 280 HAMGEDERAIEVFQKAIDLKP 300 (660)
Q Consensus 280 ~~~g~~~~A~~~~~~al~~~p 300 (660)
+..|+.+.|...|+.++....
T Consensus 114 L~lG~~~~A~~aF~~Ai~~~~ 134 (157)
T PRK15363 114 LACDNVCYAIKALKAVVRICG 134 (157)
T ss_pred HHcCCHHHHHHHHHHHHHHhc
Confidence 999999999999999999863
No 108
>PLN03077 Protein ECB2; Provisional
Probab=99.22 E-value=1.9e-09 Score=127.48 Aligned_cols=203 Identities=15% Similarity=0.048 Sum_probs=131.4
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhccCCCchhchHHHHHHHH
Q 006120 128 HMAIGRVLYEHQLFKEALVSFKRACELQPTDVRPHFRAGNCLYVLGRYREAKEEYLLALEAAETGGNQWAYLLPQIYVNL 207 (660)
Q Consensus 128 ~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~l 207 (660)
|..+...|...|+.++|+..|++++...+.+...+..+-.++...|+.+.+.+.+..+++..-.. ...++..+
T Consensus 458 ~~~mi~~~~~~g~~~eA~~lf~~m~~~~~pd~~t~~~lL~a~~~~g~l~~~~~i~~~~~~~g~~~-------~~~~~naL 530 (857)
T PLN03077 458 WTSIIAGLRLNNRCFEALIFFRQMLLTLKPNSVTLIAALSACARIGALMCGKEIHAHVLRTGIGF-------DGFLPNAL 530 (857)
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHhCCCCCHhHHHHHHHHHhhhchHHHhHHHHHHHHHhCCCc-------cceechHH
Confidence 44444444444444444444444443222233333333334444444444444444444332211 22334456
Q ss_pred HHHHHHCCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHhCCCh
Q 006120 208 GIALEGEGMVLSACEYYRESAILCPTHFRALKLLGSALFGVGEYRAAVKALEEAIFI--KPDYADAHCDLASALHAMGED 285 (660)
Q Consensus 208 a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~--~p~~~~~~~~la~~~~~~g~~ 285 (660)
-..|.+.|+.++|...|++. +.+...|..+...|...|+.++|+..|++..+. .|+ ...+..+-..+.+.|+.
T Consensus 531 i~~y~k~G~~~~A~~~f~~~----~~d~~s~n~lI~~~~~~G~~~~A~~lf~~M~~~g~~Pd-~~T~~~ll~a~~~~g~v 605 (857)
T PLN03077 531 LDLYVRCGRMNYAWNQFNSH----EKDVVSWNILLTGYVAHGKGSMAVELFNRMVESGVNPD-EVTFISLLCACSRSGMV 605 (857)
T ss_pred HHHHHHcCCHHHHHHHHHhc----CCChhhHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCC-cccHHHHHHHHhhcChH
Confidence 67888889999999888875 567788999999999999999999999988774 454 44566666778889999
Q ss_pred HHHHHHHHHHHHhCC--CCHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHcccCChhHHHHHH
Q 006120 286 ERAIEVFQKAIDLKP--GHVDALYNLGGLYMDLGAGETEEAKKALKEALKMTNRVELHDAVS 345 (660)
Q Consensus 286 ~~A~~~~~~al~~~p--~~~~a~~~La~~~~~~~~g~~~eA~~~~~~al~l~p~~~~~~~~~ 345 (660)
++|..+|+...+..+ .+...|..+..++.+. |++++|.+.+++. .+.|+...+.++.
T Consensus 606 ~ea~~~f~~M~~~~gi~P~~~~y~~lv~~l~r~--G~~~eA~~~~~~m-~~~pd~~~~~aLl 664 (857)
T PLN03077 606 TQGLEYFHSMEEKYSITPNLKHYACVVDLLGRA--GKLTEAYNFINKM-PITPDPAVWGALL 664 (857)
T ss_pred HHHHHHHHHHHHHhCCCCchHHHHHHHHHHHhC--CCHHHHHHHHHHC-CCCCCHHHHHHHH
Confidence 999999998874422 2357888899999988 9999999998875 4667765544443
No 109
>COG3071 HemY Uncharacterized enzyme of heme biosynthesis [Coenzyme metabolism]
Probab=99.21 E-value=2.8e-08 Score=99.98 Aligned_cols=238 Identities=16% Similarity=0.045 Sum_probs=193.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhccCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHH
Q 006120 91 RVFWEESTHDYAVFVKELGVLRNRADGARSREEAFDGHMAIGRVLYEHQLFKEALVSFKRACELQPT-DVRPHFRAGNCL 169 (660)
Q Consensus 91 ~~~l~~~~~~~g~~~~Al~~l~~a~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~~la~~~ 169 (660)
...-|..-..-|+|.+|.+.+.++.+..+.+ ..++..-+......|+++.|-.++.++-+..++ ...+...++.++
T Consensus 87 ~~~egl~~l~eG~~~qAEkl~~rnae~~e~p---~l~~l~aA~AA~qrgd~~~an~yL~eaae~~~~~~l~v~ltrarll 163 (400)
T COG3071 87 ALNEGLLKLFEGDFQQAEKLLRRNAEHGEQP---VLAYLLAAEAAQQRGDEDRANRYLAEAAELAGDDTLAVELTRARLL 163 (400)
T ss_pred HHHHHHHHHhcCcHHHHHHHHHHhhhcCcch---HHHHHHHHHHHHhcccHHHHHHHHHHHhccCCCchHHHHHHHHHHH
Confidence 3334556677789999999999877655544 467788889999999999999999999998544 456788899999
Q ss_pred HHcCCHHHHHHHHHHHHHHhccCCCchhchHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh-------------------
Q 006120 170 YVLGRYREAKEEYLLALEAAETGGNQWAYLLPQIYVNLGIALEGEGMVLSACEYYRESAIL------------------- 230 (660)
Q Consensus 170 ~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~------------------- 230 (660)
...|++..|.....++++..|. .+.+......+|...|++.+...++.+.-+.
T Consensus 164 l~~~d~~aA~~~v~~ll~~~pr--------~~~vlrLa~r~y~~~g~~~~ll~~l~~L~ka~~l~~~e~~~le~~a~~gl 235 (400)
T COG3071 164 LNRRDYPAARENVDQLLEMTPR--------HPEVLRLALRAYIRLGAWQALLAILPKLRKAGLLSDEEAARLEQQAWEGL 235 (400)
T ss_pred HhCCCchhHHHHHHHHHHhCcC--------ChHHHHHHHHHHHHhccHHHHHHHHHHHHHccCCChHHHHHHHHHHHHHH
Confidence 9999999999999999999999 7888888999999999999988887766321
Q ss_pred -----CC------------------CcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhCCChHH
Q 006120 231 -----CP------------------THFRALKLLGSALFGVGEYRAAVKALEEAIFIKPDYADAHCDLASALHAMGEDER 287 (660)
Q Consensus 231 -----~p------------------~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~ 287 (660)
++ .++.....++.-+...|++++|.+..+++++..-+.. ....++ ...-++...
T Consensus 236 L~q~~~~~~~~gL~~~W~~~pr~lr~~p~l~~~~a~~li~l~~~~~A~~~i~~~Lk~~~D~~-L~~~~~--~l~~~d~~~ 312 (400)
T COG3071 236 LQQARDDNGSEGLKTWWKNQPRKLRNDPELVVAYAERLIRLGDHDEAQEIIEDALKRQWDPR-LCRLIP--RLRPGDPEP 312 (400)
T ss_pred HHHHhccccchHHHHHHHhccHHhhcChhHHHHHHHHHHHcCChHHHHHHHHHHHHhccChh-HHHHHh--hcCCCCchH
Confidence 11 1244455667778899999999999999999865433 222222 236788889
Q ss_pred HHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHcccCChhHHHHH
Q 006120 288 AIEVFQKAIDLKPGHVDALYNLGGLYMDLGAGETEEAKKALKEALKMTNRVELHDAV 344 (660)
Q Consensus 288 A~~~~~~al~~~p~~~~a~~~La~~~~~~~~g~~~eA~~~~~~al~l~p~~~~~~~~ 344 (660)
=++..++.++..|+++..+..||.++... +.|.+|..+++.+++..|+.+....+
T Consensus 313 l~k~~e~~l~~h~~~p~L~~tLG~L~~k~--~~w~kA~~~leaAl~~~~s~~~~~~l 367 (400)
T COG3071 313 LIKAAEKWLKQHPEDPLLLSTLGRLALKN--KLWGKASEALEAALKLRPSASDYAEL 367 (400)
T ss_pred HHHHHHHHHHhCCCChhHHHHHHHHHHHh--hHHHHHHHHHHHHHhcCCChhhHHHH
Confidence 99999999999999999999999999998 99999999999999999886654433
No 110
>PF12569 NARP1: NMDA receptor-regulated protein 1 ; InterPro: IPR021183 This group represents N-terminal acetyltransferase A (NatA) auxiliary subunit and represents a non-catalytic component of the NatA N-terminal acetyltransferase, which catalyzes acetylation of proteins beginning with Met-Ser, Met-Gly and Met-Ala. N-terminal acetylation plays a role in normal eukaryotic translation and processing, protect against proteolytic degradation and protein turnover. NAT1 anchors ARD1 and NAT5 to the ribosome and may present the N- terminal of nascent polypeptides for acetylation [], [].
Probab=99.20 E-value=1.9e-08 Score=109.17 Aligned_cols=205 Identities=21% Similarity=0.166 Sum_probs=155.6
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhccCCCchhchHHHHHH
Q 006120 126 DGHMAIGRVLYEHQLFKEALVSFKRACELQPTDVRPHFRAGNCLYVLGRYREAKEEYLLALEAAETGGNQWAYLLPQIYV 205 (660)
Q Consensus 126 ~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~ 205 (660)
+.+.....++...|++++|++.+......-.+...+.-..|.++..+|++++|...|...++.+|+ +...+.
T Consensus 5 E~lLY~~~il~e~g~~~~AL~~L~~~~~~I~Dk~~~~E~rA~ll~kLg~~~eA~~~y~~Li~rNPd--------n~~Yy~ 76 (517)
T PF12569_consen 5 ELLLYKNSILEEAGDYEEALEHLEKNEKQILDKLAVLEKRAELLLKLGRKEEAEKIYRELIDRNPD--------NYDYYR 76 (517)
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHhhhhhCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCC--------cHHHHH
Confidence 667788899999999999999999988888888999999999999999999999999999999999 666666
Q ss_pred HHHHHHHHC-----CCHHHHHHHHHHHHHhCCCc--------------------------------HHHHHHHHHHHHHC
Q 006120 206 NLGIALEGE-----GMVLSACEYYRESAILCPTH--------------------------------FRALKLLGSALFGV 248 (660)
Q Consensus 206 ~la~~~~~~-----g~~~~A~~~~~~al~~~p~~--------------------------------~~~~~~lg~~~~~~ 248 (660)
.+..+.... .+.+.-...|++.....|.. |....++-.+|...
T Consensus 77 ~L~~~~g~~~~~~~~~~~~~~~~y~~l~~~yp~s~~~~rl~L~~~~g~~F~~~~~~yl~~~l~KgvPslF~~lk~Ly~d~ 156 (517)
T PF12569_consen 77 GLEEALGLQLQLSDEDVEKLLELYDELAEKYPRSDAPRRLPLDFLEGDEFKERLDEYLRPQLRKGVPSLFSNLKPLYKDP 156 (517)
T ss_pred HHHHHHhhhcccccccHHHHHHHHHHHHHhCccccchhHhhcccCCHHHHHHHHHHHHHHHHhcCCchHHHHHHHHHcCh
Confidence 666666322 24566677777776555542 12223333333322
Q ss_pred CCHHHHHHHHHHHHHh---------------CCCC--HHHHHHHHHHHHhCCChHHHHHHHHHHHHhCCCCHHHHHHHHH
Q 006120 249 GEYRAAVKALEEAIFI---------------KPDY--ADAHCDLASALHAMGEDERAIEVFQKAIDLKPGHVDALYNLGG 311 (660)
Q Consensus 249 g~~~~A~~~~~~al~~---------------~p~~--~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~La~ 311 (660)
.+..-....+...... .|.. ..+++.+|..|...|++++|+.+++++|+..|..++.+...|.
T Consensus 157 ~K~~~i~~l~~~~~~~l~~~~~~~~~~~~~~~~p~~~lw~~~~lAqhyd~~g~~~~Al~~Id~aI~htPt~~ely~~Kar 236 (517)
T PF12569_consen 157 EKAAIIESLVEEYVNSLESNGSFSNGDDEEKEPPSTLLWTLYFLAQHYDYLGDYEKALEYIDKAIEHTPTLVELYMTKAR 236 (517)
T ss_pred hHHHHHHHHHHHHHHhhcccCCCCCccccccCCchHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCCcHHHHHHHHH
Confidence 2222222222222111 1111 2356788999999999999999999999999999999999999
Q ss_pred HHHHhcCCCHHHHHHHHHHHHcccCChhH
Q 006120 312 LYMDLGAGETEEAKKALKEALKMTNRVEL 340 (660)
Q Consensus 312 ~~~~~~~g~~~eA~~~~~~al~l~p~~~~ 340 (660)
++... |++.+|...++.|-.++.....
T Consensus 237 ilKh~--G~~~~Aa~~~~~Ar~LD~~DRy 263 (517)
T PF12569_consen 237 ILKHA--GDLKEAAEAMDEARELDLADRY 263 (517)
T ss_pred HHHHC--CCHHHHHHHHHHHHhCChhhHH
Confidence 99999 9999999999999999976443
No 111
>COG4783 Putative Zn-dependent protease, contains TPR repeats [General function prediction only]
Probab=99.17 E-value=7.6e-09 Score=106.72 Aligned_cols=153 Identities=21% Similarity=0.180 Sum_probs=118.8
Q ss_pred CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhccCCCchhchHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCcH
Q 006120 156 PTDVRPHFRAGNCLYVLGRYREAKEEYLLALEAAETGGNQWAYLLPQIYVNLGIALEGEGMVLSACEYYRESAILCPTHF 235 (660)
Q Consensus 156 p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~ 235 (660)
|....+++..+..++..|++++|+..+...++..|+ ++..+...+.++...|+..+|.+.+++++.+.|+..
T Consensus 303 ~~~~aa~YG~A~~~~~~~~~d~A~~~l~~L~~~~P~--------N~~~~~~~~~i~~~~nk~~~A~e~~~kal~l~P~~~ 374 (484)
T COG4783 303 RGGLAAQYGRALQTYLAGQYDEALKLLQPLIAAQPD--------NPYYLELAGDILLEANKAKEAIERLKKALALDPNSP 374 (484)
T ss_pred ccchHHHHHHHHHHHHhcccchHHHHHHHHHHhCCC--------CHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCcc
Confidence 566777888888888888888888888888887777 667777778888888888888888888888888887
Q ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhCCChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH
Q 006120 236 RALKLLGSALFGVGEYRAAVKALEEAIFIKPDYADAHCDLASALHAMGEDERAIEVFQKAIDLKPGHVDALYNLGGLYMD 315 (660)
Q Consensus 236 ~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~La~~~~~ 315 (660)
..+.++|.++.+.|++.+|+..+++.+..+|+++..|..||..|..+|+..+|.... +..|..
T Consensus 375 ~l~~~~a~all~~g~~~eai~~L~~~~~~~p~dp~~w~~LAqay~~~g~~~~a~~A~-----------------AE~~~~ 437 (484)
T COG4783 375 LLQLNLAQALLKGGKPQEAIRILNRYLFNDPEDPNGWDLLAQAYAELGNRAEALLAR-----------------AEGYAL 437 (484)
T ss_pred HHHHHHHHHHHhcCChHHHHHHHHHHhhcCCCCchHHHHHHHHHHHhCchHHHHHHH-----------------HHHHHh
Confidence 788888888888888888888888888888888888888888888888776665443 344444
Q ss_pred hcCCCHHHHHHHHHHHHccc
Q 006120 316 LGAGETEEAKKALKEALKMT 335 (660)
Q Consensus 316 ~~~g~~~eA~~~~~~al~l~ 335 (660)
. |++++|+..+.++.+..
T Consensus 438 ~--G~~~~A~~~l~~A~~~~ 455 (484)
T COG4783 438 A--GRLEQAIIFLMRASQQV 455 (484)
T ss_pred C--CCHHHHHHHHHHHHHhc
Confidence 4 77888888887777665
No 112
>PF14938 SNAP: Soluble NSF attachment protein, SNAP; PDB: 1QQE_A 2IFU_A.
Probab=99.17 E-value=1.9e-09 Score=109.87 Aligned_cols=212 Identities=20% Similarity=0.160 Sum_probs=159.7
Q ss_pred HHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC--C----CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhccCCCc
Q 006120 122 EEAFDGHMAIGRVLYEHQLFKEALVSFKRACELQP--T----DVRPHFRAGNCLYVLGRYREAKEEYLLALEAAETGGNQ 195 (660)
Q Consensus 122 ~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p--~----~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~ 195 (660)
....+.+...|..|...+++++|..+|.++.+..- + ....+...+.++... ++++|+.+|++++.+....+..
T Consensus 32 e~Aa~~y~~Aa~~fk~~~~~~~A~~ay~kAa~~~~~~~~~~~Aa~~~~~Aa~~~k~~-~~~~Ai~~~~~A~~~y~~~G~~ 110 (282)
T PF14938_consen 32 EEAADLYEKAANCFKLAKDWEKAAEAYEKAADCYEKLGDKFEAAKAYEEAANCYKKG-DPDEAIECYEKAIEIYREAGRF 110 (282)
T ss_dssp HHHHHHHHHHHHHHHHTT-CHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHT-THHHHHHHHHHHHHHHHHCT-H
T ss_pred HHHHHHHHHHHHHHHHHhccchhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhh-CHHHHHHHHHHHHHHHHhcCcH
Confidence 34456677788889999999999999999977642 1 235666777777666 9999999999999998776665
Q ss_pred hhchHHHHHHHHHHHHHHC-CCHHHHHHHHHHHHHhCCC--c----HHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCC
Q 006120 196 WAYLLPQIYVNLGIALEGE-GMVLSACEYYRESAILCPT--H----FRALKLLGSALFGVGEYRAAVKALEEAIFIKPDY 268 (660)
Q Consensus 196 ~~~~~~~~~~~la~~~~~~-g~~~~A~~~~~~al~~~p~--~----~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~ 268 (660)
.. .+..+..+|.+|... |++++|+++|++|+.+... . ..++..+|.++...|+|++|+..|++.....-++
T Consensus 111 ~~--aA~~~~~lA~~ye~~~~d~e~Ai~~Y~~A~~~y~~e~~~~~a~~~~~~~A~l~~~l~~y~~A~~~~e~~~~~~l~~ 188 (282)
T PF14938_consen 111 SQ--AAKCLKELAEIYEEQLGDYEKAIEYYQKAAELYEQEGSPHSAAECLLKAADLYARLGRYEEAIEIYEEVAKKCLEN 188 (282)
T ss_dssp HH--HHHHHHHHHHHHCCTT--HHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHTCCCH
T ss_pred HH--HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHCCChhhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHhhcc
Confidence 54 788999999999999 9999999999999987321 1 4577889999999999999999999998764221
Q ss_pred -------HHHHHHHHHHHHhCCChHHHHHHHHHHHHhCCCC-----HHHHHHHHHHHHHhcCCCHHHHHHHHHHHHcccC
Q 006120 269 -------ADAHCDLASALHAMGEDERAIEVFQKAIDLKPGH-----VDALYNLGGLYMDLGAGETEEAKKALKEALKMTN 336 (660)
Q Consensus 269 -------~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~-----~~a~~~La~~~~~~~~g~~~eA~~~~~~al~l~p 336 (660)
...+...+.+++..|++..|...+++....+|.. ......|..++.......+++|+.-|++.-.+++
T Consensus 189 ~l~~~~~~~~~l~a~l~~L~~~D~v~A~~~~~~~~~~~~~F~~s~E~~~~~~l~~A~~~~D~e~f~~av~~~d~~~~ld~ 268 (282)
T PF14938_consen 189 NLLKYSAKEYFLKAILCHLAMGDYVAARKALERYCSQDPSFASSREYKFLEDLLEAYEEGDVEAFTEAVAEYDSISRLDN 268 (282)
T ss_dssp CTTGHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHGTTSTTSTTSHHHHHHHHHHHHHHTT-CCCHHHHCHHHTTSS---H
T ss_pred cccchhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCCCcHHHHHHHHHHHHHHhCCHHHHHHHHHHHcccCccHH
Confidence 2345677889999999999999999999998865 3455666666665334668888888887777664
No 113
>PLN03088 SGT1, suppressor of G2 allele of SKP1; Provisional
Probab=99.16 E-value=8.6e-10 Score=115.84 Aligned_cols=113 Identities=18% Similarity=0.145 Sum_probs=99.3
Q ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhCC
Q 006120 204 YVNLGIALEGEGMVLSACEYYRESAILCPTHFRALKLLGSALFGVGEYRAAVKALEEAIFIKPDYADAHCDLASALHAMG 283 (660)
Q Consensus 204 ~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g 283 (660)
+...|..+...|++++|+.+|+++++++|+++.++.++|.++...|++++|+..+++++.++|+++.+++.+|.++..+|
T Consensus 5 l~~~a~~a~~~~~~~~Ai~~~~~Al~~~P~~~~a~~~~a~~~~~~g~~~eAl~~~~~Al~l~P~~~~a~~~lg~~~~~lg 84 (356)
T PLN03088 5 LEDKAKEAFVDDDFALAVDLYTQAIDLDPNNAELYADRAQANIKLGNFTEAVADANKAIELDPSLAKAYLRKGTACMKLE 84 (356)
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCCHHHHHHHHHHHHHhC
Confidence 45567788888999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHh
Q 006120 284 EDERAIEVFQKAIDLKPGHVDALYNLGGLYMDL 316 (660)
Q Consensus 284 ~~~~A~~~~~~al~~~p~~~~a~~~La~~~~~~ 316 (660)
++++|+..|+++++++|++..+...++.+...+
T Consensus 85 ~~~eA~~~~~~al~l~P~~~~~~~~l~~~~~kl 117 (356)
T PLN03088 85 EYQTAKAALEKGASLAPGDSRFTKLIKECDEKI 117 (356)
T ss_pred CHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHH
Confidence 999999999999999999988888887776554
No 114
>PRK04841 transcriptional regulator MalT; Provisional
Probab=99.15 E-value=1.9e-08 Score=120.21 Aligned_cols=284 Identities=17% Similarity=0.064 Sum_probs=207.0
Q ss_pred hccCchHHHHhccCchhhHHHHHHHHHHHHhhccCCcCCchHHhhhHHHHHHhCCchHHHHhHHHHHHHHHHHHHHHHHH
Q 006120 29 VSPNHGIVFDDTWKIVDDLEILVKRLKAKQAKDGKLKGDNSDAFSDAGWSRELGTSAEISEKRVFWEESTHDYAVFVKEL 108 (660)
Q Consensus 29 ~~~~lg~~y~~~~~~~~al~~~~~~~~~a~~~~~~l~~~~~~a~~~~~~~~~l~~~~~~~~~~~~l~~~~~~~g~~~~Al 108 (660)
....+|.++...|++.++...+.++++. .+.. ...........++.++...|++.+|.
T Consensus 454 ~~~~~a~~~~~~g~~~~A~~~~~~al~~--------~~~~--------------~~~~~~~a~~~lg~~~~~~G~~~~A~ 511 (903)
T PRK04841 454 FNALRAQVAINDGDPEEAERLAELALAE--------LPLT--------------WYYSRIVATSVLGEVHHCKGELARAL 511 (903)
T ss_pred HHHHHHHHHHhCCCHHHHHHHHHHHHhc--------CCCc--------------cHHHHHHHHHHHHHHHHHcCCHHHHH
Confidence 3445677777888888888777776652 1110 00011123345577788899999999
Q ss_pred HHHHHHHhhcc---CcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC--------CHHHHHHHHHHHHHcCCHHH
Q 006120 109 GVLRNRADGAR---SREEAFDGHMAIGRVLYEHQLFKEALVSFKRACELQPT--------DVRPHFRAGNCLYVLGRYRE 177 (660)
Q Consensus 109 ~~l~~a~~~~~---~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~--------~~~~~~~la~~~~~~g~~~~ 177 (660)
..+.+++.... .......++..+|.++...|++++|...+++++..... ....+..+|.++...|++++
T Consensus 512 ~~~~~al~~~~~~g~~~~~~~~~~~la~~~~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~G~~~~ 591 (903)
T PRK04841 512 AMMQQTEQMARQHDVYHYALWSLLQQSEILFAQGFLQAAYETQEKAFQLIEEQHLEQLPMHEFLLRIRAQLLWEWARLDE 591 (903)
T ss_pred HHHHHHHHHHhhhcchHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHhccccccHHHHHHHHHHHHHHHhcCHHH
Confidence 99999887654 22333456788999999999999999999999886321 23345678999999999999
Q ss_pred HHHHHHHHHHHhccCCCchhchHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCc---HHHHH----HHHHHHHHCCC
Q 006120 178 AKEEYLLALEAAETGGNQWAYLLPQIYVNLGIALEGEGMVLSACEYYRESAILCPTH---FRALK----LLGSALFGVGE 250 (660)
Q Consensus 178 A~~~~~~al~~~p~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~---~~~~~----~lg~~~~~~g~ 250 (660)
|...+.+++.......... ....+..+|.++...|++++|...+.++..+.+.. ..... .....+...|+
T Consensus 592 A~~~~~~al~~~~~~~~~~---~~~~~~~la~~~~~~G~~~~A~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~ 668 (903)
T PRK04841 592 AEQCARKGLEVLSNYQPQQ---QLQCLAMLAKISLARGDLDNARRYLNRLENLLGNGRYHSDWIANADKVRLIYWQMTGD 668 (903)
T ss_pred HHHHHHHhHHhhhccCchH---HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhcccccHhHhhHHHHHHHHHHHHCCC
Confidence 9999999998866433221 45677789999999999999999999997763322 11111 12244556899
Q ss_pred HHHHHHHHHHHHHhCCCCH----HHHHHHHHHHHhCCChHHHHHHHHHHHHhCC------CCHHHHHHHHHHHHHhcCCC
Q 006120 251 YRAAVKALEEAIFIKPDYA----DAHCDLASALHAMGEDERAIEVFQKAIDLKP------GHVDALYNLGGLYMDLGAGE 320 (660)
Q Consensus 251 ~~~A~~~~~~al~~~p~~~----~~~~~la~~~~~~g~~~~A~~~~~~al~~~p------~~~~a~~~La~~~~~~~~g~ 320 (660)
.+.|...+.......+... ..+..++.++...|++++|...+++++.... ....++..+|.++... |+
T Consensus 669 ~~~A~~~l~~~~~~~~~~~~~~~~~~~~~a~~~~~~g~~~~A~~~l~~al~~~~~~g~~~~~a~~~~~la~a~~~~--G~ 746 (903)
T PRK04841 669 KEAAANWLRQAPKPEFANNHFLQGQWRNIARAQILLGQFDEAEIILEELNENARSLRLMSDLNRNLILLNQLYWQQ--GR 746 (903)
T ss_pred HHHHHHHHHhcCCCCCccchhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHHHc--CC
Confidence 9999999877665332222 2256889999999999999999999988631 2345788899999998 99
Q ss_pred HHHHHHHHHHHHcccCChh
Q 006120 321 TEEAKKALKEALKMTNRVE 339 (660)
Q Consensus 321 ~~eA~~~~~~al~l~p~~~ 339 (660)
.++|...+.+++++.....
T Consensus 747 ~~~A~~~L~~Al~la~~~g 765 (903)
T PRK04841 747 KSEAQRVLLEALKLANRTG 765 (903)
T ss_pred HHHHHHHHHHHHHHhCccc
Confidence 9999999999999886543
No 115
>KOG1941 consensus Acetylcholine receptor-associated protein of the synapse (rapsyn) [Extracellular structures]
Probab=99.14 E-value=1.7e-08 Score=99.66 Aligned_cols=250 Identities=18% Similarity=0.129 Sum_probs=191.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhcc---CcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC-----HHHH
Q 006120 91 RVFWEESTHDYAVFVKELGVLRNRADGAR---SREEAFDGHMAIGRVLYEHQLFKEALVSFKRACELQPTD-----VRPH 162 (660)
Q Consensus 91 ~~~l~~~~~~~g~~~~Al~~l~~a~~~~~---~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~-----~~~~ 162 (660)
+..+..+..+.|.|.+++...-..+..+. +..-..+++.++++.+....++.+++.+-+..+.+.... ..+.
T Consensus 46 lG~l~~a~s~~g~y~~mL~~a~sqi~~a~~~~ds~~~~ea~lnlar~~e~l~~f~kt~~y~k~~l~lpgt~~~~~~gq~~ 125 (518)
T KOG1941|consen 46 LGCLVTAHSEMGRYKEMLKFAVSQIDTARELEDSDFLLEAYLNLARSNEKLCEFHKTISYCKTCLGLPGTRAGQLGGQVS 125 (518)
T ss_pred hccchhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHhcCCCCCcccccchhh
Confidence 33445667788888888777655555443 344456889999999999999999999988888764222 3677
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHHhccCCCchhchHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCC----c----
Q 006120 163 FRAGNCLYVLGRYREAKEEYLLALEAAETGGNQWAYLLPQIYVNLGIALEGEGMVLSACEYYRESAILCPT----H---- 234 (660)
Q Consensus 163 ~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~----~---- 234 (660)
..+|+++..++.++++++.|++|+++.....+... ...++..+|..+....++++|..+..+|.++-.. +
T Consensus 126 l~~~~Ahlgls~fq~~Lesfe~A~~~A~~~~D~~L--Elqvcv~Lgslf~~l~D~~Kal~f~~kA~~lv~s~~l~d~~~k 203 (518)
T KOG1941|consen 126 LSMGNAHLGLSVFQKALESFEKALRYAHNNDDAML--ELQVCVSLGSLFAQLKDYEKALFFPCKAAELVNSYGLKDWSLK 203 (518)
T ss_pred hhHHHHhhhHHHHHHHHHHHHHHHHHhhccCCcee--eeehhhhHHHHHHHHHhhhHHhhhhHhHHHHHHhcCcCchhHH
Confidence 78999999999999999999999999888776654 5678999999999999999999999999887432 1
Q ss_pred --HHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC------CCCHHHHHHHHHHHHhCCChHHHHHHHHHHHHhCCC-----
Q 006120 235 --FRALKLLGSALFGVGEYRAAVKALEEAIFIK------PDYADAHCDLASALHAMGEDERAIEVFQKAIDLKPG----- 301 (660)
Q Consensus 235 --~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~------p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~----- 301 (660)
..+++.++..+..+|+.-.|.++.+++.++. +-.......+|.+|...|+.+.|..-|+.|...-..
T Consensus 204 yr~~~lyhmaValR~~G~LgdA~e~C~Ea~klal~~Gdra~~arc~~~~aDIyR~~gd~e~af~rYe~Am~~m~~~gdrm 283 (518)
T KOG1941|consen 204 YRAMSLYHMAVALRLLGRLGDAMECCEEAMKLALQHGDRALQARCLLCFADIYRSRGDLERAFRRYEQAMGTMASLGDRM 283 (518)
T ss_pred HHHHHHHHHHHHHHHhcccccHHHHHHHHHHHHHHhCChHHHHHHHHHHHHHHHhcccHhHHHHHHHHHHHHHhhhhhhH
Confidence 3467788999999999999999999998874 233566778999999999999999999999876322
Q ss_pred -CHHHHHHHHHHHHHhc---CCCHHHHHHHHHHHHcccCChhHHH
Q 006120 302 -HVDALYNLGGLYMDLG---AGETEEAKKALKEALKMTNRVELHD 342 (660)
Q Consensus 302 -~~~a~~~La~~~~~~~---~g~~~eA~~~~~~al~l~p~~~~~~ 342 (660)
...++...+.++.... .+.--.|+++-++++++........
T Consensus 284 gqv~al~g~Akc~~~~r~~~k~~~Crale~n~r~levA~~IG~K~ 328 (518)
T KOG1941|consen 284 GQVEALDGAAKCLETLRLQNKICNCRALEFNTRLLEVASSIGAKL 328 (518)
T ss_pred HHHHHHHHHHHHHHHHHHhhcccccchhHHHHHHHHHHHHhhhhH
Confidence 2446666666655440 1222348888888888876654433
No 116
>PF04733 Coatomer_E: Coatomer epsilon subunit; InterPro: IPR006822 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the epsilon subunit of the coatomer complex, which is involved in the regulation of intracellular protein trafficking between the endoplasmic reticulum and the Golgi complex []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006890 retrograde vesicle-mediated transport, Golgi to ER, 0030126 COPI vesicle coat; PDB: 3MV2_B 3MV3_F 3MKR_A.
Probab=99.11 E-value=1.3e-09 Score=110.43 Aligned_cols=242 Identities=17% Similarity=0.094 Sum_probs=176.0
Q ss_pred HHHHhHHHHHHHHHHHHHHHHHHHHHHHHHhhccCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC--CCCHHHHH
Q 006120 86 EISEKRVFWEESTHDYAVFVKELGVLRNRADGARSREEAFDGHMAIGRVLYEHQLFKEALVSFKRACELQ--PTDVRPHF 163 (660)
Q Consensus 86 ~~~~~~~~l~~~~~~~g~~~~Al~~l~~a~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~--p~~~~~~~ 163 (660)
.......+...++..+|++...+..+... ..+ ...+...++..+...++-+.++..++..+... +.++....
T Consensus 33 ~~~e~~~~~~Rs~iAlg~~~~vl~ei~~~----~~~--~l~av~~la~y~~~~~~~e~~l~~l~~~~~~~~~~~~~~~~~ 106 (290)
T PF04733_consen 33 NKLERDFYQYRSYIALGQYDSVLSEIKKS----SSP--ELQAVRLLAEYLSSPSDKESALEELKELLADQAGESNEIVQL 106 (290)
T ss_dssp HHHHHHHHHHHHHHHTT-HHHHHHHS-TT----SSC--CCHHHHHHHHHHCTSTTHHCHHHHHHHCCCTS---CHHHHHH
T ss_pred hHHHHHHHHHHHHHHcCChhHHHHHhccC----CCh--hHHHHHHHHHHHhCccchHHHHHHHHHHHHhccccccHHHHH
Confidence 34455566677777888877766554321 111 12455566666655556677777666554332 23455666
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHHHhccCCCchhchHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCcHHHHHHHHH
Q 006120 164 RAGNCLYVLGRYREAKEEYLLALEAAETGGNQWAYLLPQIYVNLGIALEGEGMVLSACEYYRESAILCPTHFRALKLLGS 243 (660)
Q Consensus 164 ~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~ 243 (660)
..|.++...|++++|++.+.+. . ..+.......++...++++.|...++.+-+.+.+..-.....++
T Consensus 107 ~~A~i~~~~~~~~~AL~~l~~~-----~--------~lE~~al~Vqi~L~~~R~dlA~k~l~~~~~~~eD~~l~qLa~aw 173 (290)
T PF04733_consen 107 LAATILFHEGDYEEALKLLHKG-----G--------SLELLALAVQILLKMNRPDLAEKELKNMQQIDEDSILTQLAEAW 173 (290)
T ss_dssp HHHHHHCCCCHHHHHHCCCTTT-----T--------CHHHHHHHHHHHHHTT-HHHHHHHHHHHHCCSCCHHHHHHHHHH
T ss_pred HHHHHHHHcCCHHHHHHHHHcc-----C--------cccHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCcHHHHHHHHHH
Confidence 7778888899999999988764 1 34566667889999999999999999998888776655555555
Q ss_pred HHHHCC--CHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhCCChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCCCH
Q 006120 244 ALFGVG--EYRAAVKALEEAIFIKPDYADAHCDLASALHAMGEDERAIEVFQKAIDLKPGHVDALYNLGGLYMDLGAGET 321 (660)
Q Consensus 244 ~~~~~g--~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~La~~~~~~~~g~~ 321 (660)
+....| ++.+|...|++..+..+.++..++.++.+++.+|++++|...+++++..+|.+++++.+++.+...+ |+.
T Consensus 174 v~l~~g~e~~~~A~y~f~El~~~~~~t~~~lng~A~~~l~~~~~~eAe~~L~~al~~~~~~~d~LaNliv~~~~~--gk~ 251 (290)
T PF04733_consen 174 VNLATGGEKYQDAFYIFEELSDKFGSTPKLLNGLAVCHLQLGHYEEAEELLEEALEKDPNDPDTLANLIVCSLHL--GKP 251 (290)
T ss_dssp HHHHHTTTCCCHHHHHHHHHHCCS--SHHHHHHHHHHHHHCT-HHHHHHHHHHHCCC-CCHHHHHHHHHHHHHHT--T-T
T ss_pred HHHHhCchhHHHHHHHHHHHHhccCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhccCCHHHHHHHHHHHHHh--CCC
Confidence 655555 6999999999988888889999999999999999999999999999999999999999999999988 777
Q ss_pred -HHHHHHHHHHHcccCChhHHHHHHHHH
Q 006120 322 -EEAKKALKEALKMTNRVELHDAVSHLK 348 (660)
Q Consensus 322 -~eA~~~~~~al~l~p~~~~~~~~~~l~ 348 (660)
+.+.+++.+.....|+......+....
T Consensus 252 ~~~~~~~l~qL~~~~p~h~~~~~~~~~~ 279 (290)
T PF04733_consen 252 TEAAERYLSQLKQSNPNHPLVKDLAEKE 279 (290)
T ss_dssp CHHHHHHHHHCHHHTTTSHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHhCCCChHHHHHHHHH
Confidence 677788888888889876655554443
No 117
>PRK04841 transcriptional regulator MalT; Provisional
Probab=99.11 E-value=7.2e-08 Score=115.24 Aligned_cols=242 Identities=12% Similarity=0.028 Sum_probs=181.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhccCcHH--HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC------CHHHHH
Q 006120 92 VFWEESTHDYAVFVKELGVLRNRADGARSREE--AFDGHMAIGRVLYEHQLFKEALVSFKRACELQPT------DVRPHF 163 (660)
Q Consensus 92 ~~l~~~~~~~g~~~~Al~~l~~a~~~~~~~~~--~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~------~~~~~~ 163 (660)
...+.++...|++.+|...+++++...+.... ...+...+|.++...|++++|...+.+++..... ...++.
T Consensus 456 ~~~a~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~a~~~lg~~~~~~G~~~~A~~~~~~al~~~~~~g~~~~~~~~~~ 535 (903)
T PRK04841 456 ALRAQVAINDGDPEEAERLAELALAELPLTWYYSRIVATSVLGEVHHCKGELARALAMMQQTEQMARQHDVYHYALWSLL 535 (903)
T ss_pred HHHHHHHHhCCCHHHHHHHHHHHHhcCCCccHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhhhcchHHHHHHHH
Confidence 34566777889999999999998875443222 3456778999999999999999999999976432 134667
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHHHhccCCCchhchHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCC-----cHHHH
Q 006120 164 RAGNCLYVLGRYREAKEEYLLALEAAETGGNQWAYLLPQIYVNLGIALEGEGMVLSACEYYRESAILCPT-----HFRAL 238 (660)
Q Consensus 164 ~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~-----~~~~~ 238 (660)
.+|.++...|++++|...+++++................++..+|.++...|++++|...+++++..... ...++
T Consensus 536 ~la~~~~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~ 615 (903)
T PRK04841 536 QQSEILFAQGFLQAAYETQEKAFQLIEEQHLEQLPMHEFLLRIRAQLLWEWARLDEAEQCARKGLEVLSNYQPQQQLQCL 615 (903)
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHHHHHHhccccccHHHHHHHHHHHHHHHhcCHHHHHHHHHHhHHhhhccCchHHHHHH
Confidence 8899999999999999999999998655432111113445677899999999999999999999876322 24567
Q ss_pred HHHHHHHHHCCCHHHHHHHHHHHHHhCCCC---HHHHH----HHHHHHHhCCChHHHHHHHHHHHHhCCCCH----HHHH
Q 006120 239 KLLGSALFGVGEYRAAVKALEEAIFIKPDY---ADAHC----DLASALHAMGEDERAIEVFQKAIDLKPGHV----DALY 307 (660)
Q Consensus 239 ~~lg~~~~~~g~~~~A~~~~~~al~~~p~~---~~~~~----~la~~~~~~g~~~~A~~~~~~al~~~p~~~----~a~~ 307 (660)
..+|.++...|++++|...+.++..+.+.. ..... .....+...|+.+.|...+.......+... ..+.
T Consensus 616 ~~la~~~~~~G~~~~A~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~l~~~~~~~~~~~~~~~~~~~ 695 (903)
T PRK04841 616 AMLAKISLARGDLDNARRYLNRLENLLGNGRYHSDWIANADKVRLIYWQMTGDKEAAANWLRQAPKPEFANNHFLQGQWR 695 (903)
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHHHhcccccHhHhhHHHHHHHHHHHHCCCHHHHHHHHHhcCCCCCccchhHHHHHH
Confidence 778999999999999999999998764322 11111 122445568999999998877654332222 1256
Q ss_pred HHHHHHHHhcCCCHHHHHHHHHHHHccc
Q 006120 308 NLGGLYMDLGAGETEEAKKALKEALKMT 335 (660)
Q Consensus 308 ~La~~~~~~~~g~~~eA~~~~~~al~l~ 335 (660)
.++.++... |++++|...+++++...
T Consensus 696 ~~a~~~~~~--g~~~~A~~~l~~al~~~ 721 (903)
T PRK04841 696 NIARAQILL--GQFDEAEIILEELNENA 721 (903)
T ss_pred HHHHHHHHc--CCHHHHHHHHHHHHHHH
Confidence 788899988 99999999999999875
No 118
>COG4783 Putative Zn-dependent protease, contains TPR repeats [General function prediction only]
Probab=99.11 E-value=1.1e-08 Score=105.44 Aligned_cols=149 Identities=21% Similarity=0.234 Sum_probs=137.2
Q ss_pred HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHH
Q 006120 200 LPQIYVNLGIALEGEGMVLSACEYYRESAILCPTHFRALKLLGSALFGVGEYRAAVKALEEAIFIKPDYADAHCDLASAL 279 (660)
Q Consensus 200 ~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~ 279 (660)
...+.+..+..++..|++++|+..++..+...|+++..+...+.++...|+.++|.+.+++++.+.|+....+.++|.+|
T Consensus 305 ~~aa~YG~A~~~~~~~~~d~A~~~l~~L~~~~P~N~~~~~~~~~i~~~~nk~~~A~e~~~kal~l~P~~~~l~~~~a~al 384 (484)
T COG4783 305 GLAAQYGRALQTYLAGQYDEALKLLQPLIAAQPDNPYYLELAGDILLEANKAKEAIERLKKALALDPNSPLLQLNLAQAL 384 (484)
T ss_pred chHHHHHHHHHHHHhcccchHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCccHHHHHHHHHH
Confidence 67889999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HhCCChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHcccCChhHHHHHHHHHHHHH
Q 006120 280 HAMGEDERAIEVFQKAIDLKPGHVDALYNLGGLYMDLGAGETEEAKKALKEALKMTNRVELHDAVSHLKQLQK 352 (660)
Q Consensus 280 ~~~g~~~~A~~~~~~al~~~p~~~~a~~~La~~~~~~~~g~~~eA~~~~~~al~l~p~~~~~~~~~~l~~l~~ 352 (660)
.+.|++.+|+..++..+..+|+++..|..|+.+|..+ |+..+|...+.+.+.+....+ .++..+....+
T Consensus 385 l~~g~~~eai~~L~~~~~~~p~dp~~w~~LAqay~~~--g~~~~a~~A~AE~~~~~G~~~--~A~~~l~~A~~ 453 (484)
T COG4783 385 LKGGKPQEAIRILNRYLFNDPEDPNGWDLLAQAYAEL--GNRAEALLARAEGYALAGRLE--QAIIFLMRASQ 453 (484)
T ss_pred HhcCChHHHHHHHHHHhhcCCCCchHHHHHHHHHHHh--CchHHHHHHHHHHHHhCCCHH--HHHHHHHHHHH
Confidence 9999999999999999999999999999999999999 999999999999998876533 34444444443
No 119
>PRK10866 outer membrane biogenesis protein BamD; Provisional
Probab=99.10 E-value=2.8e-08 Score=98.36 Aligned_cols=182 Identities=15% Similarity=0.053 Sum_probs=130.8
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHH---HHHHHHHHHHcCCHHHHHHHHHHHHHHhccCCCchhchHH
Q 006120 125 FDGHMAIGRVLYEHQLFKEALVSFKRACELQPTDVRP---HFRAGNCLYVLGRYREAKEEYLLALEAAETGGNQWAYLLP 201 (660)
Q Consensus 125 ~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~---~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~ 201 (660)
...++..|..++..|++++|+..|++++...|..+.+ .+.+|.+++..+++++|+..+++.++..|+++. .+
T Consensus 32 ~~~~Y~~A~~~~~~g~y~~Ai~~f~~l~~~yP~s~~a~~a~l~la~ayy~~~~y~~A~~~~e~fi~~~P~~~~-----~~ 106 (243)
T PRK10866 32 PSEIYATAQQKLQDGNWKQAITQLEALDNRYPFGPYSQQVQLDLIYAYYKNADLPLAQAAIDRFIRLNPTHPN-----ID 106 (243)
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCcCCCc-----hH
Confidence 4668899999999999999999999999999987654 489999999999999999999999999999765 67
Q ss_pred HHHHHHHHHHHHCC---------------C---HHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Q 006120 202 QIYVNLGIALEGEG---------------M---VLSACEYYRESAILCPTHFRALKLLGSALFGVGEYRAAVKALEEAIF 263 (660)
Q Consensus 202 ~~~~~la~~~~~~g---------------~---~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~ 263 (660)
.+++.+|.++...+ + ..+|+..+++.++..|+...+ .+|...+..+
T Consensus 107 ~a~Y~~g~~~~~~~~~~~~~~~~~~~~~rD~~~~~~A~~~~~~li~~yP~S~ya--------------~~A~~rl~~l-- 170 (243)
T PRK10866 107 YVLYMRGLTNMALDDSALQGFFGVDRSDRDPQHARAAFRDFSKLVRGYPNSQYT--------------TDATKRLVFL-- 170 (243)
T ss_pred HHHHHHHHhhhhcchhhhhhccCCCccccCHHHHHHHHHHHHHHHHHCcCChhH--------------HHHHHHHHHH--
Confidence 88888888764443 1 246778888888888876321 1121111111
Q ss_pred hCCCCHHHHHHHHHHHHhCCChHHHHHHHHHHHHhCCCC---HHHHHHHHHHHHHhcCCCHHHHHHHHHH
Q 006120 264 IKPDYADAHCDLASALHAMGEDERAIEVFQKAIDLKPGH---VDALYNLGGLYMDLGAGETEEAKKALKE 330 (660)
Q Consensus 264 ~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~---~~a~~~La~~~~~~~~g~~~eA~~~~~~ 330 (660)
...-..--...|..|.+.|.+..|+.-++.+++..|+. .+++..+..+|..+ |..++|......
T Consensus 171 -~~~la~~e~~ia~~Y~~~~~y~AA~~r~~~v~~~Yp~t~~~~eal~~l~~ay~~l--g~~~~a~~~~~~ 237 (243)
T PRK10866 171 -KDRLAKYELSVAEYYTKRGAYVAVVNRVEQMLRDYPDTQATRDALPLMENAYRQL--QLNAQADKVAKI 237 (243)
T ss_pred -HHHHHHHHHHHHHHHHHcCchHHHHHHHHHHHHHCCCCchHHHHHHHHHHHHHHc--CChHHHHHHHHH
Confidence 11112223356666777777777777777777766554 45666777777766 677776665543
No 120
>PF13525 YfiO: Outer membrane lipoprotein; PDB: 3TGO_A 3Q5M_A 2YHC_A.
Probab=99.10 E-value=1.8e-08 Score=97.36 Aligned_cols=177 Identities=21% Similarity=0.198 Sum_probs=114.7
Q ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC---HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhccCCCchhchH
Q 006120 124 AFDGHMAIGRVLYEHQLFKEALVSFKRACELQPTD---VRPHFRAGNCLYVLGRYREAKEEYLLALEAAETGGNQWAYLL 200 (660)
Q Consensus 124 ~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~---~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~ 200 (660)
....++..|..++..|++.+|+..|++++...|.. ..+.+.+|.+++..|++++|+..+++.++..|.+.. .
T Consensus 4 ~~~~lY~~a~~~~~~g~y~~Ai~~f~~l~~~~P~s~~a~~A~l~la~a~y~~~~y~~A~~~~~~fi~~yP~~~~-----~ 78 (203)
T PF13525_consen 4 TAEALYQKALEALQQGDYEEAIKLFEKLIDRYPNSPYAPQAQLMLAYAYYKQGDYEEAIAAYERFIKLYPNSPK-----A 78 (203)
T ss_dssp -HHHHHHHHHHHHHCT-HHHHHHHHHHHHHH-TTSTTHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHH-TT-TT-----H
T ss_pred CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCcc-----h
Confidence 34778999999999999999999999999998774 578999999999999999999999999999998664 6
Q ss_pred HHHHHHHHHHHHHC-----------CCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCH
Q 006120 201 PQIYVNLGIALEGE-----------GMVLSACEYYRESAILCPTHFRALKLLGSALFGVGEYRAAVKALEEAIFIKPDYA 269 (660)
Q Consensus 201 ~~~~~~la~~~~~~-----------g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~ 269 (660)
+.+++.+|.++..+ +...+|+..|+..+...|++..+ .+|...+..+-+ .-.
T Consensus 79 ~~A~Y~~g~~~~~~~~~~~~~~~D~~~~~~A~~~~~~li~~yP~S~y~--------------~~A~~~l~~l~~---~la 141 (203)
T PF13525_consen 79 DYALYMLGLSYYKQIPGILRSDRDQTSTRKAIEEFEELIKRYPNSEYA--------------EEAKKRLAELRN---RLA 141 (203)
T ss_dssp HHHHHHHHHHHHHHHHHHH-TT---HHHHHHHHHHHHHHHH-TTSTTH--------------HHHHHHHHHHHH---HHH
T ss_pred hhHHHHHHHHHHHhCccchhcccChHHHHHHHHHHHHHHHHCcCchHH--------------HHHHHHHHHHHH---HHH
Confidence 67888888876544 22346777777777777765221 111111111100 011
Q ss_pred HHHHHHHHHHHhCCChHHHHHHHHHHHHhCCCCH---HHHHHHHHHHHHhcCCCHHHH
Q 006120 270 DAHCDLASALHAMGEDERAIEVFQKAIDLKPGHV---DALYNLGGLYMDLGAGETEEA 324 (660)
Q Consensus 270 ~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~---~a~~~La~~~~~~~~g~~~eA 324 (660)
.--..+|..|.+.|.+..|+..++.+++..|+.. +++..++.+|..+ |..+.|
T Consensus 142 ~~e~~ia~~Y~~~~~y~aA~~r~~~v~~~yp~t~~~~~al~~l~~~y~~l--~~~~~a 197 (203)
T PF13525_consen 142 EHELYIARFYYKRGKYKAAIIRFQYVIENYPDTPAAEEALARLAEAYYKL--GLKQAA 197 (203)
T ss_dssp HHHHHHHHHHHCTT-HHHHHHHHHHHHHHSTTSHHHHHHHHHHHHHHHHT--T-HHHH
T ss_pred HHHHHHHHHHHHcccHHHHHHHHHHHHHHCCCCchHHHHHHHHHHHHHHh--CChHHH
Confidence 2233456666666666666666666666666553 4566666666666 555533
No 121
>PLN03088 SGT1, suppressor of G2 allele of SKP1; Provisional
Probab=99.07 E-value=2.5e-09 Score=112.33 Aligned_cols=111 Identities=18% Similarity=0.159 Sum_probs=69.6
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHHHhccCCCchhchHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCcHHHHHHHHH
Q 006120 164 RAGNCLYVLGRYREAKEEYLLALEAAETGGNQWAYLLPQIYVNLGIALEGEGMVLSACEYYRESAILCPTHFRALKLLGS 243 (660)
Q Consensus 164 ~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~ 243 (660)
..|..++..|++++|+..|.++++++|. .+.++.++|.++..+|++++|+..+++++.++|+++.+++.+|.
T Consensus 7 ~~a~~a~~~~~~~~Ai~~~~~Al~~~P~--------~~~a~~~~a~~~~~~g~~~eAl~~~~~Al~l~P~~~~a~~~lg~ 78 (356)
T PLN03088 7 DKAKEAFVDDDFALAVDLYTQAIDLDPN--------NAELYADRAQANIKLGNFTEAVADANKAIELDPSLAKAYLRKGT 78 (356)
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHhCCC--------CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCCHHHHHHHHH
Confidence 4455556666666666666666666665 45566666666666666666666666666666666666666666
Q ss_pred HHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhC
Q 006120 244 ALFGVGEYRAAVKALEEAIFIKPDYADAHCDLASALHAM 282 (660)
Q Consensus 244 ~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~ 282 (660)
++..+|++++|+..|++++.++|++..+...++.+...+
T Consensus 79 ~~~~lg~~~eA~~~~~~al~l~P~~~~~~~~l~~~~~kl 117 (356)
T PLN03088 79 ACMKLEEYQTAKAALEKGASLAPGDSRFTKLIKECDEKI 117 (356)
T ss_pred HHHHhCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHH
Confidence 666666666666666666666666666666666654444
No 122
>PF13525 YfiO: Outer membrane lipoprotein; PDB: 3TGO_A 3Q5M_A 2YHC_A.
Probab=99.04 E-value=4.3e-08 Score=94.64 Aligned_cols=172 Identities=18% Similarity=0.166 Sum_probs=112.6
Q ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhccCCCchhchHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCc---
Q 006120 158 DVRPHFRAGNCLYVLGRYREAKEEYLLALEAAETGGNQWAYLLPQIYVNLGIALEGEGMVLSACEYYRESAILCPTH--- 234 (660)
Q Consensus 158 ~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~--- 234 (660)
.+..++..|..++..|++.+|+..|++++...|.... ...+.+.+|.++...|++++|+..+++.++..|++
T Consensus 4 ~~~~lY~~a~~~~~~g~y~~Ai~~f~~l~~~~P~s~~-----a~~A~l~la~a~y~~~~y~~A~~~~~~fi~~yP~~~~~ 78 (203)
T PF13525_consen 4 TAEALYQKALEALQQGDYEEAIKLFEKLIDRYPNSPY-----APQAQLMLAYAYYKQGDYEEAIAAYERFIKLYPNSPKA 78 (203)
T ss_dssp -HHHHHHHHHHHHHCT-HHHHHHHHHHHHHH-TTSTT-----HHHHHHHHHHHHHHTT-HHHHHHHHHHHHHH-TT-TTH
T ss_pred CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCChH-----HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCcch
Confidence 4567788888888888888888888888888877543 66788888888888888888888888888888776
Q ss_pred HHHHHHHHHHHHHCC-----------CHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhCCChHHHHHHHHHHHHhCCCCH
Q 006120 235 FRALKLLGSALFGVG-----------EYRAAVKALEEAIFIKPDYADAHCDLASALHAMGEDERAIEVFQKAIDLKPGHV 303 (660)
Q Consensus 235 ~~~~~~lg~~~~~~g-----------~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~ 303 (660)
..+++.+|.+++.+. ...+|+..|+..+...|++..+-. |...+..+ .....
T Consensus 79 ~~A~Y~~g~~~~~~~~~~~~~~~D~~~~~~A~~~~~~li~~yP~S~y~~~--------------A~~~l~~l---~~~la 141 (203)
T PF13525_consen 79 DYALYMLGLSYYKQIPGILRSDRDQTSTRKAIEEFEELIKRYPNSEYAEE--------------AKKRLAEL---RNRLA 141 (203)
T ss_dssp HHHHHHHHHHHHHHHHHHH-TT---HHHHHHHHHHHHHHHH-TTSTTHHH--------------HHHHHHHH---HHHHH
T ss_pred hhHHHHHHHHHHHhCccchhcccChHHHHHHHHHHHHHHHHCcCchHHHH--------------HHHHHHHH---HHHHH
Confidence 457777777665432 234666666777766666532211 11111100 00112
Q ss_pred HHHHHHHHHHHHhcCCCHHHHHHHHHHHHcccCChhH-HHHHHHHHHHHHH
Q 006120 304 DALYNLGGLYMDLGAGETEEAKKALKEALKMTNRVEL-HDAVSHLKQLQKK 353 (660)
Q Consensus 304 ~a~~~La~~~~~~~~g~~~eA~~~~~~al~l~p~~~~-~~~~~~l~~l~~~ 353 (660)
.--+.+|..|... |.+..|+..++.+++--|+... .+++..+......
T Consensus 142 ~~e~~ia~~Y~~~--~~y~aA~~r~~~v~~~yp~t~~~~~al~~l~~~y~~ 190 (203)
T PF13525_consen 142 EHELYIARFYYKR--GKYKAAIIRFQYVIENYPDTPAAEEALARLAEAYYK 190 (203)
T ss_dssp HHHHHHHHHHHCT--T-HHHHHHHHHHHHHHSTTSHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHc--ccHHHHHHHHHHHHHHCCCCchHHHHHHHHHHHHHH
Confidence 3345689999988 9999999999999999988544 4566666555443
No 123
>KOG1941 consensus Acetylcholine receptor-associated protein of the synapse (rapsyn) [Extracellular structures]
Probab=99.03 E-value=8.8e-09 Score=101.69 Aligned_cols=240 Identities=16% Similarity=0.097 Sum_probs=194.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhccCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC------CHHHHHHH
Q 006120 92 VFWEESTHDYAVFVKELGVLRNRADGARSREEAFDGHMAIGRVLYEHQLFKEALVSFKRACELQPT------DVRPHFRA 165 (660)
Q Consensus 92 ~~l~~~~~~~g~~~~Al~~l~~a~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~------~~~~~~~l 165 (660)
+..+.-++...++.+|+..+.+.+....+....+..+-.+..+...+|.|++++.+--..++...+ ..+++.++
T Consensus 10 ~~~g~~Ly~s~~~~~al~~w~~~L~~l~~~~~Rf~~lG~l~~a~s~~g~y~~mL~~a~sqi~~a~~~~ds~~~~ea~lnl 89 (518)
T KOG1941|consen 10 IEKGLQLYQSNQTEKALQVWTKVLEKLSDLMGRFRVLGCLVTAHSEMGRYKEMLKFAVSQIDTARELEDSDFLLEAYLNL 89 (518)
T ss_pred HHHHHhHhcCchHHHHHHHHHHHHHHHHHHHHHHHHhccchhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333555667778899999999999888888878888888999999999999988876555544321 24688899
Q ss_pred HHHHHHcCCHHHHHHHHHHHHHHhccCCCchhchHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCc------HHHHH
Q 006120 166 GNCLYVLGRYREAKEEYLLALEAAETGGNQWAYLLPQIYVNLGIALEGEGMVLSACEYYRESAILCPTH------FRALK 239 (660)
Q Consensus 166 a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~------~~~~~ 239 (660)
+..+....++.+++.+-...+.+-....... -..+...+|.++..++.+++++++|++|+.+..++ ..++.
T Consensus 90 ar~~e~l~~f~kt~~y~k~~l~lpgt~~~~~---~gq~~l~~~~Ahlgls~fq~~Lesfe~A~~~A~~~~D~~LElqvcv 166 (518)
T KOG1941|consen 90 ARSNEKLCEFHKTISYCKTCLGLPGTRAGQL---GGQVSLSMGNAHLGLSVFQKALESFEKALRYAHNNDDAMLELQVCV 166 (518)
T ss_pred HHHHHHHHHhhhHHHHHHHHhcCCCCCcccc---cchhhhhHHHHhhhHHHHHHHHHHHHHHHHHhhccCCceeeeehhh
Confidence 9999999999999998888887643322111 34677779999999999999999999999875443 34788
Q ss_pred HHHHHHHHCCCHHHHHHHHHHHHHhCCC----C------HHHHHHHHHHHHhCCChHHHHHHHHHHHHhC------CCCH
Q 006120 240 LLGSALFGVGEYRAAVKALEEAIFIKPD----Y------ADAHCDLASALHAMGEDERAIEVFQKAIDLK------PGHV 303 (660)
Q Consensus 240 ~lg~~~~~~g~~~~A~~~~~~al~~~p~----~------~~~~~~la~~~~~~g~~~~A~~~~~~al~~~------p~~~ 303 (660)
.||.++....++++|+.+..+|.++... + ..+++.++..+..+|+...|.++.+++.++. +-..
T Consensus 167 ~Lgslf~~l~D~~Kal~f~~kA~~lv~s~~l~d~~~kyr~~~lyhmaValR~~G~LgdA~e~C~Ea~klal~~Gdra~~a 246 (518)
T KOG1941|consen 167 SLGSLFAQLKDYEKALFFPCKAAELVNSYGLKDWSLKYRAMSLYHMAVALRLLGRLGDAMECCEEAMKLALQHGDRALQA 246 (518)
T ss_pred hHHHHHHHHHhhhHHhhhhHhHHHHHHhcCcCchhHHHHHHHHHHHHHHHHHhcccccHHHHHHHHHHHHHHhCChHHHH
Confidence 9999999999999999999999988432 2 3467889999999999999999999998873 3345
Q ss_pred HHHHHHHHHHHHhcCCCHHHHHHHHHHHHcccC
Q 006120 304 DALYNLGGLYMDLGAGETEEAKKALKEALKMTN 336 (660)
Q Consensus 304 ~a~~~La~~~~~~~~g~~~eA~~~~~~al~l~p 336 (660)
..+..+|.+|... |+.+.|..-|++|.....
T Consensus 247 rc~~~~aDIyR~~--gd~e~af~rYe~Am~~m~ 277 (518)
T KOG1941|consen 247 RCLLCFADIYRSR--GDLERAFRRYEQAMGTMA 277 (518)
T ss_pred HHHHHHHHHHHhc--ccHhHHHHHHHHHHHHHh
Confidence 6788899999999 999999999999987753
No 124
>PRK10866 outer membrane biogenesis protein BamD; Provisional
Probab=99.03 E-value=7.3e-08 Score=95.41 Aligned_cols=173 Identities=14% Similarity=0.098 Sum_probs=126.1
Q ss_pred CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhccCCCchhchHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCc--
Q 006120 157 TDVRPHFRAGNCLYVLGRYREAKEEYLLALEAAETGGNQWAYLLPQIYVNLGIALEGEGMVLSACEYYRESAILCPTH-- 234 (660)
Q Consensus 157 ~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~-- 234 (660)
..+..++..|..+...|++++|++.|++++...|.... ...+.+.+|.++.+.+++++|+..+++.++..|++
T Consensus 30 ~~~~~~Y~~A~~~~~~g~y~~Ai~~f~~l~~~yP~s~~-----a~~a~l~la~ayy~~~~y~~A~~~~e~fi~~~P~~~~ 104 (243)
T PRK10866 30 NPPSEIYATAQQKLQDGNWKQAITQLEALDNRYPFGPY-----SQQVQLDLIYAYYKNADLPLAQAAIDRFIRLNPTHPN 104 (243)
T ss_pred CCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCChH-----HHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCcCCCc
Confidence 35777888999999999999999999999999887532 45667899999999999999999999999998876
Q ss_pred -HHHHHHHHHHHHHCC---------------C---HHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhCCChHHHHHHHHHH
Q 006120 235 -FRALKLLGSALFGVG---------------E---YRAAVKALEEAIFIKPDYADAHCDLASALHAMGEDERAIEVFQKA 295 (660)
Q Consensus 235 -~~~~~~lg~~~~~~g---------------~---~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~a 295 (660)
+.+++.+|.++...+ + ..+|+..|++.++..|+...+ .+|...+
T Consensus 105 ~~~a~Y~~g~~~~~~~~~~~~~~~~~~~~~rD~~~~~~A~~~~~~li~~yP~S~ya--------------~~A~~rl--- 167 (243)
T PRK10866 105 IDYVLYMRGLTNMALDDSALQGFFGVDRSDRDPQHARAAFRDFSKLVRGYPNSQYT--------------TDATKRL--- 167 (243)
T ss_pred hHHHHHHHHHhhhhcchhhhhhccCCCccccCHHHHHHHHHHHHHHHHHCcCChhH--------------HHHHHHH---
Confidence 557888887764443 1 246778888899998887331 1111111
Q ss_pred HHhCCCCHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHcccCCh-hHHHHHHHHHHHHHH
Q 006120 296 IDLKPGHVDALYNLGGLYMDLGAGETEEAKKALKEALKMTNRV-ELHDAVSHLKQLQKK 353 (660)
Q Consensus 296 l~~~p~~~~a~~~La~~~~~~~~g~~~eA~~~~~~al~l~p~~-~~~~~~~~l~~l~~~ 353 (660)
..+......--..+|..|.+. |.+..|+..++.+++--|+. ...+++..+......
T Consensus 168 ~~l~~~la~~e~~ia~~Y~~~--~~y~AA~~r~~~v~~~Yp~t~~~~eal~~l~~ay~~ 224 (243)
T PRK10866 168 VFLKDRLAKYELSVAEYYTKR--GAYVAVVNRVEQMLRDYPDTQATRDALPLMENAYRQ 224 (243)
T ss_pred HHHHHHHHHHHHHHHHHHHHc--CchHHHHHHHHHHHHHCCCCchHHHHHHHHHHHHHH
Confidence 111111123345778889988 99999999999999988873 345566665555443
No 125
>KOG2376 consensus Signal recognition particle, subunit Srp72 [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.01 E-value=4.3e-08 Score=102.90 Aligned_cols=225 Identities=16% Similarity=0.077 Sum_probs=151.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhccCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCC
Q 006120 95 EESTHDYAVFVKELGVLRNRADGARSREEAFDGHMAIGRVLYEHQLFKEALVSFKRACELQPTDVRPHFRAGNCLYVLGR 174 (660)
Q Consensus 95 ~~~~~~~g~~~~Al~~l~~a~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~ 174 (660)
...+...++|++|+....+.+...++.+ .+....-.++.+.+.|++|+...+.-..... .....+..+.|.+++++
T Consensus 19 ln~~~~~~e~e~a~k~~~Kil~~~pdd~---~a~~cKvValIq~~ky~~ALk~ikk~~~~~~-~~~~~fEKAYc~Yrlnk 94 (652)
T KOG2376|consen 19 LNRHGKNGEYEEAVKTANKILSIVPDDE---DAIRCKVVALIQLDKYEDALKLIKKNGALLV-INSFFFEKAYCEYRLNK 94 (652)
T ss_pred HHHhccchHHHHHHHHHHHHHhcCCCcH---hhHhhhHhhhhhhhHHHHHHHHHHhcchhhh-cchhhHHHHHHHHHccc
Confidence 3455677888888888888888776665 5566667778888888888744433222111 11222677888888888
Q ss_pred HHHHHHHHHHHHHHhccCCCchhchHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHCCCHHHH
Q 006120 175 YREAKEEYLLALEAAETGGNQWAYLLPQIYVNLGIALEGEGMVLSACEYYRESAILCPTHFRALKLLGSALFGVGEYRAA 254 (660)
Q Consensus 175 ~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A 254 (660)
.++|+..+. -.++. ...+....|++++++|+|++|+..|+..++.+.++.+.......+..... . .
T Consensus 95 ~Dealk~~~---~~~~~--------~~~ll~L~AQvlYrl~~ydealdiY~~L~kn~~dd~d~~~r~nl~a~~a~--l-~ 160 (652)
T KOG2376|consen 95 LDEALKTLK---GLDRL--------DDKLLELRAQVLYRLERYDEALDIYQHLAKNNSDDQDEERRANLLAVAAA--L-Q 160 (652)
T ss_pred HHHHHHHHh---ccccc--------chHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHHh--h-h
Confidence 888888877 22222 33566677888888888888888888887776665443332221111100 0 0
Q ss_pred HHHHHHHHHhCCC-CHHHHHHHHHHHHhCCChHHHHHHHHHHHHhC-------CCC--------HHHHHHHHHHHHHhcC
Q 006120 255 VKALEEAIFIKPD-YADAHCDLASALHAMGEDERAIEVFQKAIDLK-------PGH--------VDALYNLGGLYMDLGA 318 (660)
Q Consensus 255 ~~~~~~al~~~p~-~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~-------p~~--------~~a~~~La~~~~~~~~ 318 (660)
.+ ..+.+...|. +-+.++|.+.++...|+|.+|++.+++++.+. ..+ ......|+.++..+
T Consensus 161 ~~-~~q~v~~v~e~syel~yN~Ac~~i~~gky~qA~elL~kA~~~~~e~l~~~d~~eEeie~el~~IrvQlayVlQ~~-- 237 (652)
T KOG2376|consen 161 VQ-LLQSVPEVPEDSYELLYNTACILIENGKYNQAIELLEKALRICREKLEDEDTNEEEIEEELNPIRVQLAYVLQLQ-- 237 (652)
T ss_pred HH-HHHhccCCCcchHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHhhcccccchhhHHHHHHHHHHHHHHHHHHh--
Confidence 11 2333334444 56789999999999999999999999995541 111 23667889999988
Q ss_pred CCHHHHHHHHHHHHcccCChhH
Q 006120 319 GETEEAKKALKEALKMTNRVEL 340 (660)
Q Consensus 319 g~~~eA~~~~~~al~l~p~~~~ 340 (660)
|+.++|...|...++.+|..+.
T Consensus 238 Gqt~ea~~iy~~~i~~~~~D~~ 259 (652)
T KOG2376|consen 238 GQTAEASSIYVDIIKRNPADEP 259 (652)
T ss_pred cchHHHHHHHHHHHHhcCCCch
Confidence 9999999999999999877554
No 126
>PRK02603 photosystem I assembly protein Ycf3; Provisional
Probab=99.01 E-value=2.9e-08 Score=93.35 Aligned_cols=121 Identities=28% Similarity=0.331 Sum_probs=80.8
Q ss_pred CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhccCCCchhchHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCcHH
Q 006120 157 TDVRPHFRAGNCLYVLGRYREAKEEYLLALEAAETGGNQWAYLLPQIYVNLGIALEGEGMVLSACEYYRESAILCPTHFR 236 (660)
Q Consensus 157 ~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~ 236 (660)
..+.+++.+|..+...|++++|+.+++++++..|+... ...++.++|.++...|++++|+.++++++...|++..
T Consensus 33 ~~a~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~-----~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~ 107 (172)
T PRK02603 33 KEAFVYYRDGMSAQADGEYAEALENYEEALKLEEDPND-----RSYILYNMGIIYASNGEHDKALEYYHQALELNPKQPS 107 (172)
T ss_pred hhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhccch-----HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcccHH
Confidence 34556677777777777777777777777766554221 3456677777777777777777777777777777777
Q ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhCCChHHHHHHHHHHHHhCCCC
Q 006120 237 ALKLLGSALFGVGEYRAAVKALEEAIFIKPDYADAHCDLASALHAMGEDERAIEVFQKAIDLKPGH 302 (660)
Q Consensus 237 ~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~ 302 (660)
.+..+|.++...|+...+...+.+++. .+++|+.++++++..+|++
T Consensus 108 ~~~~lg~~~~~~g~~~~a~~~~~~A~~--------------------~~~~A~~~~~~a~~~~p~~ 153 (172)
T PRK02603 108 ALNNIAVIYHKRGEKAEEAGDQDEAEA--------------------LFDKAAEYWKQAIRLAPNN 153 (172)
T ss_pred HHHHHHHHHHHcCChHhHhhCHHHHHH--------------------HHHHHHHHHHHHHhhCchh
Confidence 777777777777776666655555442 2566677777777777665
No 127
>TIGR02795 tol_pal_ybgF tol-pal system protein YbgF. Members of this protein family are the product of one of seven genes regularly clustered in operons to encode the proteins of the tol-pal system, which is critical for maintaining the integrity of the bacterial outer membrane. The gene for this periplasmic protein has been designated orf2 and ybgF. All members of the seed alignment were from unique tol-pal gene regions from completed bacterial genomes. The architecture of this protein is a signal sequence, a low-complexity region usually rich in Asn and Gln, a well-conserved region with tandem repeats that resemble the tetratricopeptide (TPR) repeat, involved in protein-protein interaction.
Probab=99.01 E-value=1e-08 Score=89.67 Aligned_cols=105 Identities=25% Similarity=0.333 Sum_probs=81.2
Q ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCc---HHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCC---HHHHHHH
Q 006120 202 QIYVNLGIALEGEGMVLSACEYYRESAILCPTH---FRALKLLGSALFGVGEYRAAVKALEEAIFIKPDY---ADAHCDL 275 (660)
Q Consensus 202 ~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~---~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~---~~~~~~l 275 (660)
.+++.+|..+...|++++|+..+++++...|++ ..+++.+|.++...|++++|+..+++++...|++ +.++..+
T Consensus 3 ~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~~ 82 (119)
T TIGR02795 3 EAYYDAALLVLKAGDYADAIQAFQAFLKKYPKSTYAPNAHYWLGEAYYAQGKYADAAKAFLAVVKKYPKSPKAPDALLKL 82 (119)
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCccccHHHHHHHHHHHHhhccHHHHHHHHHHHHHHCCCCCcccHHHHHH
Confidence 456777888888888888888888888777765 4677778888888888888888888888877764 5677788
Q ss_pred HHHHHhCCChHHHHHHHHHHHHhCCCCHHHH
Q 006120 276 ASALHAMGEDERAIEVFQKAIDLKPGHVDAL 306 (660)
Q Consensus 276 a~~~~~~g~~~~A~~~~~~al~~~p~~~~a~ 306 (660)
|.++..+|++++|+..+++++...|++..+.
T Consensus 83 ~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~ 113 (119)
T TIGR02795 83 GMSLQELGDKEKAKATLQQVIKRYPGSSAAK 113 (119)
T ss_pred HHHHHHhCChHHHHHHHHHHHHHCcCChhHH
Confidence 8888888888888888888888887766543
No 128
>PF14938 SNAP: Soluble NSF attachment protein, SNAP; PDB: 1QQE_A 2IFU_A.
Probab=98.99 E-value=4.4e-08 Score=99.86 Aligned_cols=181 Identities=19% Similarity=0.230 Sum_probs=142.3
Q ss_pred CHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhccCCCchhchHHHHHHHHHHHHHHCCCHHH
Q 006120 140 LFKEALVSFKRACELQPTDVRPHFRAGNCLYVLGRYREAKEEYLLALEAAETGGNQWAYLLPQIYVNLGIALEGEGMVLS 219 (660)
Q Consensus 140 ~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~la~~~~~~g~~~~ 219 (660)
++++|...|.++ |.+|...+++++|...|.++........+.+. .+..+...+.++... ++++
T Consensus 30 ~~e~Aa~~y~~A--------------a~~fk~~~~~~~A~~ay~kAa~~~~~~~~~~~--Aa~~~~~Aa~~~k~~-~~~~ 92 (282)
T PF14938_consen 30 DYEEAADLYEKA--------------ANCFKLAKDWEKAAEAYEKAADCYEKLGDKFE--AAKAYEEAANCYKKG-DPDE 92 (282)
T ss_dssp HHHHHHHHHHHH--------------HHHHHHTT-CHHHHHHHHHHHHHHHHTT-HHH--HHHHHHHHHHHHHHT-THHH
T ss_pred CHHHHHHHHHHH--------------HHHHHHHhccchhHHHHHHHHHHHHHcCCHHH--HHHHHHHHHHHHHhh-CHHH
Confidence 677777776665 78899999999999999999998877666554 678888888888777 9999
Q ss_pred HHHHHHHHHHhCC--C----cHHHHHHHHHHHHHC-CCHHHHHHHHHHHHHhCCC--C----HHHHHHHHHHHHhCCChH
Q 006120 220 ACEYYRESAILCP--T----HFRALKLLGSALFGV-GEYRAAVKALEEAIFIKPD--Y----ADAHCDLASALHAMGEDE 286 (660)
Q Consensus 220 A~~~~~~al~~~p--~----~~~~~~~lg~~~~~~-g~~~~A~~~~~~al~~~p~--~----~~~~~~la~~~~~~g~~~ 286 (660)
|+.++++++.+.- + -+..+..+|.+|... |++++|+++|++|+++... . ...+..+|.++..+|+|+
T Consensus 93 Ai~~~~~A~~~y~~~G~~~~aA~~~~~lA~~ye~~~~d~e~Ai~~Y~~A~~~y~~e~~~~~a~~~~~~~A~l~~~l~~y~ 172 (282)
T PF14938_consen 93 AIECYEKAIEIYREAGRFSQAAKCLKELAEIYEEQLGDYEKAIEYYQKAAELYEQEGSPHSAAECLLKAADLYARLGRYE 172 (282)
T ss_dssp HHHHHHHHHHHHHHCT-HHHHHHHHHHHHHHHCCTT--HHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHTT-HH
T ss_pred HHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHCCChhhHHHHHHHHHHHHHHhCCHH
Confidence 9999999998632 2 156889999999999 9999999999999998432 2 456788999999999999
Q ss_pred HHHHHHHHHHHhCCCC-------HHHHHHHHHHHHHhcCCCHHHHHHHHHHHHcccCChh
Q 006120 287 RAIEVFQKAIDLKPGH-------VDALYNLGGLYMDLGAGETEEAKKALKEALKMTNRVE 339 (660)
Q Consensus 287 ~A~~~~~~al~~~p~~-------~~a~~~La~~~~~~~~g~~~eA~~~~~~al~l~p~~~ 339 (660)
+|+..|++.....-++ ...+...+.++... |+...|...+++....+|...
T Consensus 173 ~A~~~~e~~~~~~l~~~l~~~~~~~~~l~a~l~~L~~--~D~v~A~~~~~~~~~~~~~F~ 230 (282)
T PF14938_consen 173 EAIEIYEEVAKKCLENNLLKYSAKEYFLKAILCHLAM--GDYVAARKALERYCSQDPSFA 230 (282)
T ss_dssp HHHHHHHHHHHTCCCHCTTGHHHHHHHHHHHHHHHHT--T-HHHHHHHHHHHGTTSTTST
T ss_pred HHHHHHHHHHHHhhcccccchhHHHHHHHHHHHHHHc--CCHHHHHHHHHHHHhhCCCCC
Confidence 9999999998753221 13456677778877 999999999999999998643
No 129
>KOG1915 consensus Cell cycle control protein (crooked neck) [Cell cycle control, cell division, chromosome partitioning]
Probab=98.97 E-value=1.9e-06 Score=88.35 Aligned_cols=246 Identities=15% Similarity=0.169 Sum_probs=114.6
Q ss_pred chHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHhhccCc--HHHHHHHHHHHHHHHHcCCHHHHHH-----HHHHHHHhCC
Q 006120 84 SAEISEKRVFWEESTHDYAVFVKELGVLRNRADGARSR--EEAFDGHMAIGRVLYEHQLFKEALV-----SFKRACELQP 156 (660)
Q Consensus 84 ~~~~~~~~~~l~~~~~~~g~~~~Al~~l~~a~~~~~~~--~~~~~~~~~lg~~~~~~g~~~~A~~-----~~~~al~~~p 156 (660)
+..........+..-..+..++.|-..|+-+++..|.. .+....+...-.-+-...-.+.++. .|++.+..+|
T Consensus 240 d~~~e~lfvaFA~fEe~qkE~ERar~iykyAld~~pk~raeeL~k~~~~fEKqfGd~~gIEd~Iv~KRk~qYE~~v~~np 319 (677)
T KOG1915|consen 240 DEEAEILFVAFAEFEERQKEYERARFIYKYALDHIPKGRAEELYKKYTAFEKQFGDKEGIEDAIVGKRKFQYEKEVSKNP 319 (677)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHHhcchhhhHHHHhhhhhhHHHHHHHhCC
Confidence 33344444555555556666666666666666665544 1111111111111111111222221 2445555555
Q ss_pred CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhccCCC--chhchHHHHHHHHHHH-HHHCCCHHHHHHHHHHHHHhCCC
Q 006120 157 TDVRPHFRAGNCLYVLGRYREAKEEYLLALEAAETGGN--QWAYLLPQIYVNLGIA-LEGEGMVLSACEYYRESAILCPT 233 (660)
Q Consensus 157 ~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~--~~~~~~~~~~~~la~~-~~~~g~~~~A~~~~~~al~~~p~ 233 (660)
.+-++|+..-.+....|+.+.-.+.|++|+...|.... .|. ....+|.+.+.. -....+.+.+.+.|+.++++-|.
T Consensus 320 ~nYDsWfdylrL~e~~g~~~~Ire~yErAIanvpp~~ekr~W~-RYIYLWinYalyeEle~ed~ertr~vyq~~l~lIPH 398 (677)
T KOG1915|consen 320 YNYDSWFDYLRLEESVGDKDRIRETYERAIANVPPASEKRYWR-RYIYLWINYALYEELEAEDVERTRQVYQACLDLIPH 398 (677)
T ss_pred CCchHHHHHHHHHHhcCCHHHHHHHHHHHHccCCchhHHHHHH-HHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHhhcCc
Confidence 55555555555555555555555555555554443211 111 123334444432 23345555555555555555553
Q ss_pred c----HHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhCCChHHHHHHHHHHHHhCCCCHHHHHHH
Q 006120 234 H----FRALKLLGSALFGVGEYRAAVKALEEAIFIKPDYADAHCDLASALHAMGEDERAIEVFQKAIDLKPGHVDALYNL 309 (660)
Q Consensus 234 ~----~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~L 309 (660)
. +..|...|....++.+...|.+.+..|+-+.|.+ ...-....+-.++++++.....|++-++..|.+..+|...
T Consensus 399 kkFtFaKiWlmyA~feIRq~~l~~ARkiLG~AIG~cPK~-KlFk~YIelElqL~efDRcRkLYEkfle~~Pe~c~~W~ky 477 (677)
T KOG1915|consen 399 KKFTFAKIWLMYAQFEIRQLNLTGARKILGNAIGKCPKD-KLFKGYIELELQLREFDRCRKLYEKFLEFSPENCYAWSKY 477 (677)
T ss_pred ccchHHHHHHHHHHHHHHHcccHHHHHHHHHHhccCCch-hHHHHHHHHHHHHhhHHHHHHHHHHHHhcChHhhHHHHHH
Confidence 2 4445555555555555555555555555555542 2223333334444455555555555555555555555555
Q ss_pred HHHHHHhcCCCHHHHHHHHHHHHc
Q 006120 310 GGLYMDLGAGETEEAKKALKEALK 333 (660)
Q Consensus 310 a~~~~~~~~g~~~eA~~~~~~al~ 333 (660)
|.+-..+ |+.+.|...|+-|++
T Consensus 478 aElE~~L--gdtdRaRaifelAi~ 499 (677)
T KOG1915|consen 478 AELETSL--GDTDRARAIFELAIS 499 (677)
T ss_pred HHHHHHh--hhHHHHHHHHHHHhc
Confidence 5554444 455555555554444
No 130
>COG4235 Cytochrome c biogenesis factor [Posttranslational modification, protein turnover, chaperones]
Probab=98.96 E-value=4.4e-08 Score=96.16 Aligned_cols=123 Identities=21% Similarity=0.219 Sum_probs=113.4
Q ss_pred CHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhCC---ChHHHHHHH
Q 006120 216 MVLSACEYYRESAILCPTHFRALKLLGSALFGVGEYRAAVKALEEAIFIKPDYADAHCDLASALHAMG---EDERAIEVF 292 (660)
Q Consensus 216 ~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g---~~~~A~~~~ 292 (660)
..+.-+.-++.-+..+|++++-|..||.+|..+|++..|...|.+|+++.|+++..+..+|.+++.+. ...++...+
T Consensus 137 ~~~~l~a~Le~~L~~nP~d~egW~~Lg~~ym~~~~~~~A~~AY~~A~rL~g~n~~~~~g~aeaL~~~a~~~~ta~a~~ll 216 (287)
T COG4235 137 EMEALIARLETHLQQNPGDAEGWDLLGRAYMALGRASDALLAYRNALRLAGDNPEILLGLAEALYYQAGQQMTAKARALL 216 (287)
T ss_pred cHHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcchhHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCCcccHHHHHHH
Confidence 45677778888899999999999999999999999999999999999999999999999999887653 468899999
Q ss_pred HHHHHhCCCCHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHcccCChhH
Q 006120 293 QKAIDLKPGHVDALYNLGGLYMDLGAGETEEAKKALKEALKMTNRVEL 340 (660)
Q Consensus 293 ~~al~~~p~~~~a~~~La~~~~~~~~g~~~eA~~~~~~al~l~p~~~~ 340 (660)
++++.++|++..+.+.||..++.. |++.+|...++..++..|....
T Consensus 217 ~~al~~D~~~iral~lLA~~afe~--g~~~~A~~~Wq~lL~~lp~~~~ 262 (287)
T COG4235 217 RQALALDPANIRALSLLAFAAFEQ--GDYAEAAAAWQMLLDLLPADDP 262 (287)
T ss_pred HHHHhcCCccHHHHHHHHHHHHHc--ccHHHHHHHHHHHHhcCCCCCc
Confidence 999999999999999999999998 9999999999999999876544
No 131
>TIGR02795 tol_pal_ybgF tol-pal system protein YbgF. Members of this protein family are the product of one of seven genes regularly clustered in operons to encode the proteins of the tol-pal system, which is critical for maintaining the integrity of the bacterial outer membrane. The gene for this periplasmic protein has been designated orf2 and ybgF. All members of the seed alignment were from unique tol-pal gene regions from completed bacterial genomes. The architecture of this protein is a signal sequence, a low-complexity region usually rich in Asn and Gln, a well-conserved region with tandem repeats that resemble the tetratricopeptide (TPR) repeat, involved in protein-protein interaction.
Probab=98.95 E-value=2.2e-08 Score=87.58 Aligned_cols=106 Identities=16% Similarity=0.291 Sum_probs=64.2
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC---HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhccCCCchhchHHH
Q 006120 126 DGHMAIGRVLYEHQLFKEALVSFKRACELQPTD---VRPHFRAGNCLYVLGRYREAKEEYLLALEAAETGGNQWAYLLPQ 202 (660)
Q Consensus 126 ~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~---~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~ 202 (660)
+.++.+|..+...|++++|+..|.++++.+|++ ..+++.+|.++...|++++|+..+++++...|.... .+.
T Consensus 3 ~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~-----~~~ 77 (119)
T TIGR02795 3 EAYYDAALLVLKAGDYADAIQAFQAFLKKYPKSTYAPNAHYWLGEAYYAQGKYADAAKAFLAVVKKYPKSPK-----APD 77 (119)
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCccccHHHHHHHHHHHHhhccHHHHHHHHHHHHHHCCCCCc-----ccH
Confidence 445666666666666666666666666666554 345666666666666666666666666666554321 234
Q ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCcHH
Q 006120 203 IYVNLGIALEGEGMVLSACEYYRESAILCPTHFR 236 (660)
Q Consensus 203 ~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~ 236 (660)
++..+|.++...|++++|+.++++++...|++..
T Consensus 78 ~~~~~~~~~~~~~~~~~A~~~~~~~~~~~p~~~~ 111 (119)
T TIGR02795 78 ALLKLGMSLQELGDKEKAKATLQQVIKRYPGSSA 111 (119)
T ss_pred HHHHHHHHHHHhCChHHHHHHHHHHHHHCcCChh
Confidence 5566666666666666666666666666665544
No 132
>PRK11906 transcriptional regulator; Provisional
Probab=98.94 E-value=1.8e-07 Score=97.38 Aligned_cols=179 Identities=16% Similarity=0.044 Sum_probs=146.3
Q ss_pred HHHHHHHHHcCC---HHHHHHHHHHHH---HHhccCCCchhchHHHHHHHHHHHHHHC---------CCHHHHHHHHHHH
Q 006120 163 FRAGNCLYVLGR---YREAKEEYLLAL---EAAETGGNQWAYLLPQIYVNLGIALEGE---------GMVLSACEYYRES 227 (660)
Q Consensus 163 ~~la~~~~~~g~---~~~A~~~~~~al---~~~p~~~~~~~~~~~~~~~~la~~~~~~---------g~~~~A~~~~~~a 227 (660)
+..|......+. .+.|+.+|.+++ +++|. .+.+|..++.++... ....+|.+..+++
T Consensus 259 ylrg~~~~~~~t~~~~~~Al~lf~ra~~~~~ldp~--------~a~a~~~lA~~h~~~~~~g~~~~~~~~~~a~~~A~rA 330 (458)
T PRK11906 259 MLAGKKELYDFTPESIYRAMTIFDRLQNKSDIQTL--------KTECYCLLAECHMSLALHGKSELELAAQKALELLDYV 330 (458)
T ss_pred HHHHHHHhhccCHHHHHHHHHHHHHHhhcccCCcc--------cHHHHHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHH
Confidence 666666655544 468899999999 88888 788888888877643 3466889999999
Q ss_pred HHhCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhCCChHHHHHHHHHHHHhCCCCHHHHH
Q 006120 228 AILCPTHFRALKLLGSALFGVGEYRAAVKALEEAIFIKPDYADAHCDLASALHAMGEDERAIEVFQKAIDLKPGHVDALY 307 (660)
Q Consensus 228 l~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~ 307 (660)
++++|.++.++..+|.++...++++.|...|++|+.++|+.+.+|+..|.+....|+.++|.+.++++++++|....+-.
T Consensus 331 veld~~Da~a~~~~g~~~~~~~~~~~a~~~f~rA~~L~Pn~A~~~~~~~~~~~~~G~~~~a~~~i~~alrLsP~~~~~~~ 410 (458)
T PRK11906 331 SDITTVDGKILAIMGLITGLSGQAKVSHILFEQAKIHSTDIASLYYYRALVHFHNEKIEEARICIDKSLQLEPRRRKAVV 410 (458)
T ss_pred HhcCCCCHHHHHHHHHHHHhhcchhhHHHHHHHHhhcCCccHHHHHHHHHHHHHcCCHHHHHHHHHHHhccCchhhHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999998755433
Q ss_pred H-HHH-HHHHhcCCCHHHHHHHHHHHHcccCChhHHHHHHHHHHHHH
Q 006120 308 N-LGG-LYMDLGAGETEEAKKALKEALKMTNRVELHDAVSHLKQLQK 352 (660)
Q Consensus 308 ~-La~-~~~~~~~g~~~eA~~~~~~al~l~p~~~~~~~~~~l~~l~~ 352 (660)
. +-. .|.. ...++|+..|-+--+-....-..+.+.+++++.+
T Consensus 411 ~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 454 (458)
T PRK11906 411 IKECVDMYVP---NPLKNNIKLYYKETESESHRVIIDNILKLKQLTR 454 (458)
T ss_pred HHHHHHHHcC---CchhhhHHHHhhccccccchhhHHHHHHHHHHHH
Confidence 3 222 4543 5889999998877666555555566666665544
No 133
>KOG3785 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.94 E-value=1.7e-07 Score=92.45 Aligned_cols=199 Identities=18% Similarity=0.180 Sum_probs=119.9
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhccCCCchhch--------
Q 006120 128 HMAIGRVLYEHQLFKEALVSFKRACELQPTDVRPHFRAGNCLYVLGRYREAKEEYLLALEAAETGGNQWAYL-------- 199 (660)
Q Consensus 128 ~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~-------- 199 (660)
...+|.+.+..-.|++|++.|++.+..+|+....-..+|.||+++.-|+-+.+.+.--+...|++.......
T Consensus 154 qLSLAsvhYmR~HYQeAIdvYkrvL~dn~ey~alNVy~ALCyyKlDYydvsqevl~vYL~q~pdStiA~NLkacn~fRl~ 233 (557)
T KOG3785|consen 154 QLSLASVHYMRMHYQEAIDVYKRVLQDNPEYIALNVYMALCYYKLDYYDVSQEVLKVYLRQFPDSTIAKNLKACNLFRLI 233 (557)
T ss_pred HHhHHHHHHHHHHHHHHHHHHHHHHhcChhhhhhHHHHHHHHHhcchhhhHHHHHHHHHHhCCCcHHHHHHHHHHHhhhh
Confidence 345666677777788888888888887777777777788888888888877777777766666542111100
Q ss_pred --------------------------------------------------HHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Q 006120 200 --------------------------------------------------LPQIYVNLGIALEGEGMVLSACEYYRESAI 229 (660)
Q Consensus 200 --------------------------------------------------~~~~~~~la~~~~~~g~~~~A~~~~~~al~ 229 (660)
.+++..++...|..+++..+|....+.
T Consensus 234 ngr~ae~E~k~ladN~~~~~~f~~~l~rHNLVvFrngEgALqVLP~L~~~IPEARlNL~iYyL~q~dVqeA~~L~Kd--- 310 (557)
T KOG3785|consen 234 NGRTAEDEKKELADNIDQEYPFIEYLCRHNLVVFRNGEGALQVLPSLMKHIPEARLNLIIYYLNQNDVQEAISLCKD--- 310 (557)
T ss_pred ccchhHHHHHHHHhcccccchhHHHHHHcCeEEEeCCccHHHhchHHHhhChHhhhhheeeecccccHHHHHHHHhh---
Confidence 467777888888888888888777654
Q ss_pred hCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHH---HHhC------CCCHHHHHHHHHHHHhCCChHHHHHHHHHHHHhCC
Q 006120 230 LCPTHFRALKLLGSALFGVGEYRAAVKALEEA---IFIK------PDYADAHCDLASALHAMGEDERAIEVFQKAIDLKP 300 (660)
Q Consensus 230 ~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~a---l~~~------p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p 300 (660)
++|..+.-+...|.+....|+--...+.++-| +.+- -+.......+|.++....++++.+.+++..-...-
T Consensus 311 l~PttP~EyilKgvv~aalGQe~gSreHlKiAqqffqlVG~Sa~ecDTIpGRQsmAs~fFL~~qFddVl~YlnSi~sYF~ 390 (557)
T KOG3785|consen 311 LDPTTPYEYILKGVVFAALGQETGSREHLKIAQQFFQLVGESALECDTIPGRQSMASYFFLSFQFDDVLTYLNSIESYFT 390 (557)
T ss_pred cCCCChHHHHHHHHHHHHhhhhcCcHHHHHHHHHHHHHhcccccccccccchHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 57777777777777666666543333332222 2221 11122233444444444555555555555444444
Q ss_pred CCHHHHHHHHHHHHHhcCCCHHHHHHHHHHH
Q 006120 301 GHVDALYNLGGLYMDLGAGETEEAKKALKEA 331 (660)
Q Consensus 301 ~~~~a~~~La~~~~~~~~g~~~eA~~~~~~a 331 (660)
++....+++++++... |++.+|.+.|-+.
T Consensus 391 NdD~Fn~N~AQAk~at--gny~eaEelf~~i 419 (557)
T KOG3785|consen 391 NDDDFNLNLAQAKLAT--GNYVEAEELFIRI 419 (557)
T ss_pred CcchhhhHHHHHHHHh--cChHHHHHHHhhh
Confidence 4445555555555555 5555555555444
No 134
>PRK02603 photosystem I assembly protein Ycf3; Provisional
Probab=98.94 E-value=5.2e-08 Score=91.59 Aligned_cols=121 Identities=18% Similarity=0.160 Sum_probs=104.5
Q ss_pred CcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC---HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhccCCCch
Q 006120 120 SREEAFDGHMAIGRVLYEHQLFKEALVSFKRACELQPTD---VRPHFRAGNCLYVLGRYREAKEEYLLALEAAETGGNQW 196 (660)
Q Consensus 120 ~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~---~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~ 196 (660)
..+.....++.+|..+...|++++|+.+|+++++..|+. ..++..+|.++...|++++|+..+++++...|.
T Consensus 30 ~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~----- 104 (172)
T PRK02603 30 KKAKEAFVYYRDGMSAQADGEYAEALENYEEALKLEEDPNDRSYILYNMGIIYASNGEHDKALEYYHQALELNPK----- 104 (172)
T ss_pred cHhhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcc-----
Confidence 445556789999999999999999999999999887653 578999999999999999999999999999998
Q ss_pred hchHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCC
Q 006120 197 AYLLPQIYVNLGIALEGEGMVLSACEYYRESAILCPTHFRALKLLGSALFGVGEYRAAVKALEEAIFIKPDY 268 (660)
Q Consensus 197 ~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~ 268 (660)
....+..+|.++...|+...+...+++++. .+++|++++++++..+|++
T Consensus 105 ---~~~~~~~lg~~~~~~g~~~~a~~~~~~A~~--------------------~~~~A~~~~~~a~~~~p~~ 153 (172)
T PRK02603 105 ---QPSALNNIAVIYHKRGEKAEEAGDQDEAEA--------------------LFDKAAEYWKQAIRLAPNN 153 (172)
T ss_pred ---cHHHHHHHHHHHHHcCChHhHhhCHHHHHH--------------------HHHHHHHHHHHHHhhCchh
Confidence 778888999999999998887777666543 2678888999999988876
No 135
>CHL00033 ycf3 photosystem I assembly protein Ycf3
Probab=98.94 E-value=2.5e-08 Score=93.38 Aligned_cols=101 Identities=21% Similarity=0.199 Sum_probs=57.6
Q ss_pred HHHHHHHHHHHHHhCCCC--HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhccCCCchhchHHHHHHHHHHHHHHCCCHH
Q 006120 141 FKEALVSFKRACELQPTD--VRPHFRAGNCLYVLGRYREAKEEYLLALEAAETGGNQWAYLLPQIYVNLGIALEGEGMVL 218 (660)
Q Consensus 141 ~~~A~~~~~~al~~~p~~--~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~la~~~~~~g~~~ 218 (660)
+..+...+...++..+.. ...++.+|.++...|++++|+..+++++.+.|+... .+.++.++|.++...|+++
T Consensus 15 ~~~~~~~l~~~~~~~~~~~~a~~~~~~g~~~~~~g~~~~A~~~~~~al~l~~~~~~-----~~~~~~~lg~~~~~~g~~~ 89 (168)
T CHL00033 15 FTIVADILLRILPTTSGEKEAFTYYRDGMSAQSEGEYAEALQNYYEAMRLEIDPYD-----RSYILYNIGLIHTSNGEHT 89 (168)
T ss_pred cccchhhhhHhccCCchhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhccccchh-----hHHHHHHHHHHHHHcCCHH
Confidence 344444444433333332 445566666666666666666666666665443211 3345666666666666666
Q ss_pred HHHHHHHHHHHhCCCcHHHHHHHHHHHH
Q 006120 219 SACEYYRESAILCPTHFRALKLLGSALF 246 (660)
Q Consensus 219 ~A~~~~~~al~~~p~~~~~~~~lg~~~~ 246 (660)
+|+.++++++.+.|.....+.++|.++.
T Consensus 90 eA~~~~~~Al~~~~~~~~~~~~la~i~~ 117 (168)
T CHL00033 90 KALEYYFQALERNPFLPQALNNMAVICH 117 (168)
T ss_pred HHHHHHHHHHHhCcCcHHHHHHHHHHHH
Confidence 6666666666666666666666666665
No 136
>cd00189 TPR Tetratricopeptide repeat domain; typically contains 34 amino acids [WLF]-X(2)-[LIM]-[GAS]-X(2)-[YLF]-X(8)-[ASE]-X(3)-[FYL]-X(2)-[ASL]-X(4)-[PKE] is the consensus sequence; found in a variety of organisms including bacteria, cyanobacteria, yeast, fungi, plants, and humans in various subcellular locations; involved in a variety of functions including protein-protein interactions, but common features in the interaction partners have not been defined; involved in chaperone, cell-cycle, transciption, and protein transport complexes; the number of TPR motifs varies among proteins (1,3-11,13 15,16,19); 5-6 tandem repeats generate a right-handed helical structure with an amphipathic channel that is thought to accomodate an alpha-helix of a target protein; it has been proposed that TPR proteins preferably interact with WD-40 repeat proteins, but in many instances several TPR-proteins seem to aggregate to multi-protein complexes; examples of TPR-proteins include, Cdc16p, Cdc23p and C
Probab=98.93 E-value=1.4e-08 Score=83.81 Aligned_cols=97 Identities=39% Similarity=0.623 Sum_probs=56.7
Q ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhCCChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhc
Q 006120 238 LKLLGSALFGVGEYRAAVKALEEAIFIKPDYADAHCDLASALHAMGEDERAIEVFQKAIDLKPGHVDALYNLGGLYMDLG 317 (660)
Q Consensus 238 ~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~La~~~~~~~ 317 (660)
+..+|.++...|++++|+..++++++..|.+..++..+|.++...+++++|+..+++++...|.+..++..++.++...
T Consensus 3 ~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~- 81 (100)
T cd00189 3 LLNLGNLYYKLGDYDEALEYYEKALELDPDNADAYYNLAAAYYKLGKYEEALEDYEKALELDPDNAKAYYNLGLAYYKL- 81 (100)
T ss_pred HHHHHHHHHHHhcHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCcchhHHHHHHHHHHHH-
Confidence 4455555555555555665555555555555555555666665556666666666666555555555555666665555
Q ss_pred CCCHHHHHHHHHHHHcccC
Q 006120 318 AGETEEAKKALKEALKMTN 336 (660)
Q Consensus 318 ~g~~~eA~~~~~~al~l~p 336 (660)
|++++|...++++++..|
T Consensus 82 -~~~~~a~~~~~~~~~~~~ 99 (100)
T cd00189 82 -GKYEEALEAYEKALELDP 99 (100)
T ss_pred -HhHHHHHHHHHHHHccCC
Confidence 556666666665555544
No 137
>KOG4340 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.93 E-value=5.2e-08 Score=94.00 Aligned_cols=215 Identities=19% Similarity=0.213 Sum_probs=173.2
Q ss_pred HHHHHHHHHHHHHHHHHhhccCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHH
Q 006120 99 HDYAVFVKELGVLRNRADGARSREEAFDGHMAIGRVLYEHQLFKEALVSFKRACELQPTDVRPHFRAGNCLYVLGRYREA 178 (660)
Q Consensus 99 ~~~g~~~~Al~~l~~a~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A 178 (660)
..-.+|..+++.+....+..+... .++..+|.+|+...+|..|..+|++.-...|.........+..+++.+.+.+|
T Consensus 21 I~d~ry~DaI~~l~s~~Er~p~~r---AgLSlLgyCYY~~Q~f~~AA~CYeQL~ql~P~~~qYrlY~AQSLY~A~i~ADA 97 (459)
T KOG4340|consen 21 IRDARYADAIQLLGSELERSPRSR---AGLSLLGYCYYRLQEFALAAECYEQLGQLHPELEQYRLYQAQSLYKACIYADA 97 (459)
T ss_pred HHHhhHHHHHHHHHHHHhcCccch---HHHHHHHHHHHHHHHHHHHHHHHHHHHhhChHHHHHHHHHHHHHHHhcccHHH
Confidence 556678999999988877766443 67889999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHhccCCCchhchHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHCCCHHHHHHHH
Q 006120 179 KEEYLLALEAAETGGNQWAYLLPQIYVNLGIALEGEGMVLSACEYYRESAILCPTHFRALKLLGSALFGVGEYRAAVKAL 258 (660)
Q Consensus 179 ~~~~~~al~~~p~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~ 258 (660)
+......... |. +........+-+....+++..+....++.- ..+.+....+.|-+.++.|++++|++-|
T Consensus 98 LrV~~~~~D~-~~-------L~~~~lqLqaAIkYse~Dl~g~rsLveQlp--~en~Ad~~in~gCllykegqyEaAvqkF 167 (459)
T KOG4340|consen 98 LRVAFLLLDN-PA-------LHSRVLQLQAAIKYSEGDLPGSRSLVEQLP--SENEADGQINLGCLLYKEGQYEAAVQKF 167 (459)
T ss_pred HHHHHHhcCC-HH-------HHHHHHHHHHHHhcccccCcchHHHHHhcc--CCCccchhccchheeeccccHHHHHHHH
Confidence 9887766543 22 155666667778888888888877766531 1256888999999999999999999999
Q ss_pred HHHHHhCCCCHHHHHHHHHHHHhCCChHHHHHHHHHHHHh----CCCC-------------------------HHHHHHH
Q 006120 259 EEAIFIKPDYADAHCDLASALHAMGEDERAIEVFQKAIDL----KPGH-------------------------VDALYNL 309 (660)
Q Consensus 259 ~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~----~p~~-------------------------~~a~~~L 309 (660)
+.|++...-.+..-++++.+....++++.|+++..+.++. .|.. .++....
T Consensus 168 qaAlqvsGyqpllAYniALaHy~~~qyasALk~iSEIieRG~r~HPElgIGm~tegiDvrsvgNt~~lh~Sal~eAfNLK 247 (459)
T KOG4340|consen 168 QAALQVSGYQPLLAYNLALAHYSSRQYASALKHISEIIERGIRQHPELGIGMTTEGIDVRSVGNTLVLHQSALVEAFNLK 247 (459)
T ss_pred HHHHhhcCCCchhHHHHHHHHHhhhhHHHHHHHHHHHHHhhhhcCCccCccceeccCchhcccchHHHHHHHHHHHhhhh
Confidence 9999999888899999999999999999999998887765 2321 1344555
Q ss_pred HHHHHHhcCCCHHHHHHHH
Q 006120 310 GGLYMDLGAGETEEAKKAL 328 (660)
Q Consensus 310 a~~~~~~~~g~~~eA~~~~ 328 (660)
+.++.+. |+++.|.+.+
T Consensus 248 aAIeyq~--~n~eAA~eaL 264 (459)
T KOG4340|consen 248 AAIEYQL--RNYEAAQEAL 264 (459)
T ss_pred hhhhhhc--ccHHHHHHHh
Confidence 5666666 7777776654
No 138
>CHL00033 ycf3 photosystem I assembly protein Ycf3
Probab=98.93 E-value=2.4e-08 Score=93.56 Aligned_cols=81 Identities=22% Similarity=0.150 Sum_probs=66.3
Q ss_pred HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCc---HHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHH
Q 006120 200 LPQIYVNLGIALEGEGMVLSACEYYRESAILCPTH---FRALKLLGSALFGVGEYRAAVKALEEAIFIKPDYADAHCDLA 276 (660)
Q Consensus 200 ~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~---~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la 276 (660)
....++.+|.++...|++++|+..|++++.+.|+. +.++.++|.++...|++++|+..+++++.+.|.....+.++|
T Consensus 34 ~a~~~~~~g~~~~~~g~~~~A~~~~~~al~l~~~~~~~~~~~~~lg~~~~~~g~~~eA~~~~~~Al~~~~~~~~~~~~la 113 (168)
T CHL00033 34 EAFTYYRDGMSAQSEGEYAEALQNYYEAMRLEIDPYDRSYILYNIGLIHTSNGEHTKALEYYFQALERNPFLPQALNNMA 113 (168)
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHhccccchhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCcHHHHHHHH
Confidence 56777888888888888888888888888776653 457888888888888888888888888888888888888888
Q ss_pred HHHH
Q 006120 277 SALH 280 (660)
Q Consensus 277 ~~~~ 280 (660)
.++.
T Consensus 114 ~i~~ 117 (168)
T CHL00033 114 VICH 117 (168)
T ss_pred HHHH
Confidence 8777
No 139
>COG0457 NrfG FOG: TPR repeat [General function prediction only]
Probab=98.92 E-value=3.9e-06 Score=81.23 Aligned_cols=226 Identities=30% Similarity=0.374 Sum_probs=192.5
Q ss_pred HHHHHHHHHHHHHHHhhccCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH--hCCCCHHHHHHHHHHHHHcCCHHHH
Q 006120 101 YAVFVKELGVLRNRADGARSREEAFDGHMAIGRVLYEHQLFKEALVSFKRACE--LQPTDVRPHFRAGNCLYVLGRYREA 178 (660)
Q Consensus 101 ~g~~~~Al~~l~~a~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~--~~p~~~~~~~~la~~~~~~g~~~~A 178 (660)
.+.+..+...+.......... .........+..+...+++..+...+...+. ..+.....+..++..+...+++..+
T Consensus 36 ~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 114 (291)
T COG0457 36 LGELAEALELLEEALELLPNS-DLAGLLLLLALALLKLGRLEEALELLEKALELELLPNLAEALLNLGLLLEALGKYEEA 114 (291)
T ss_pred HhhHHHHHHHHHHHHhcCccc-cchHHHHHHHHHHHHcccHHHHHHHHHHHHhhhhccchHHHHHHHHHHHHHHhhHHHH
Confidence 456666667666666655432 1235678889999999999999999999997 6788889999999999999999999
Q ss_pred HHHHHHHHHHhccCCCchhchHHHHHHHHHH-HHHHCCCHHHHHHHHHHHHHhCC---CcHHHHHHHHHHHHHCCCHHHH
Q 006120 179 KEEYLLALEAAETGGNQWAYLLPQIYVNLGI-ALEGEGMVLSACEYYRESAILCP---THFRALKLLGSALFGVGEYRAA 254 (660)
Q Consensus 179 ~~~~~~al~~~p~~~~~~~~~~~~~~~~la~-~~~~~g~~~~A~~~~~~al~~~p---~~~~~~~~lg~~~~~~g~~~~A 254 (660)
...+.+++...+.. .......+. ++...|++++|...+.+++...| .....+...+..+...++++.|
T Consensus 115 ~~~~~~~~~~~~~~--------~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a 186 (291)
T COG0457 115 LELLEKALALDPDP--------DLAEALLALGALYELGDYEEALELYEKALELDPELNELAEALLALGALLEALGRYEEA 186 (291)
T ss_pred HHHHHHHHcCCCCc--------chHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCccchHHHHHHhhhHHHHhcCHHHH
Confidence 99999999987763 233333444 89999999999999999988776 4566777777888899999999
Q ss_pred HHHHHHHHHhCCC-CHHHHHHHHHHHHhCCChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHc
Q 006120 255 VKALEEAIFIKPD-YADAHCDLASALHAMGEDERAIEVFQKAIDLKPGHVDALYNLGGLYMDLGAGETEEAKKALKEALK 333 (660)
Q Consensus 255 ~~~~~~al~~~p~-~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~La~~~~~~~~g~~~eA~~~~~~al~ 333 (660)
+..+.+++...+. ....+..++..+...+++++|+..+..++...|.....+..++..+... +.++++...+.+++.
T Consensus 187 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~ 264 (291)
T COG0457 187 LELLEKALKLNPDDDAEALLNLGLLYLKLGKYEEALEYYEKALELDPDNAEALYNLALLLLEL--GRYEEALEALEKALE 264 (291)
T ss_pred HHHHHHHHhhCcccchHHHHHhhHHHHHcccHHHHHHHHHHHHhhCcccHHHHhhHHHHHHHc--CCHHHHHHHHHHHHH
Confidence 9999999999999 6999999999999999999999999999999999788888888888855 889999999999999
Q ss_pred ccCC
Q 006120 334 MTNR 337 (660)
Q Consensus 334 l~p~ 337 (660)
..|.
T Consensus 265 ~~~~ 268 (291)
T COG0457 265 LDPD 268 (291)
T ss_pred hCcc
Confidence 9886
No 140
>cd00189 TPR Tetratricopeptide repeat domain; typically contains 34 amino acids [WLF]-X(2)-[LIM]-[GAS]-X(2)-[YLF]-X(8)-[ASE]-X(3)-[FYL]-X(2)-[ASL]-X(4)-[PKE] is the consensus sequence; found in a variety of organisms including bacteria, cyanobacteria, yeast, fungi, plants, and humans in various subcellular locations; involved in a variety of functions including protein-protein interactions, but common features in the interaction partners have not been defined; involved in chaperone, cell-cycle, transciption, and protein transport complexes; the number of TPR motifs varies among proteins (1,3-11,13 15,16,19); 5-6 tandem repeats generate a right-handed helical structure with an amphipathic channel that is thought to accomodate an alpha-helix of a target protein; it has been proposed that TPR proteins preferably interact with WD-40 repeat proteins, but in many instances several TPR-proteins seem to aggregate to multi-protein complexes; examples of TPR-proteins include, Cdc16p, Cdc23p and C
Probab=98.92 E-value=1.2e-08 Score=84.10 Aligned_cols=99 Identities=32% Similarity=0.472 Sum_probs=94.3
Q ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhC
Q 006120 203 IYVNLGIALEGEGMVLSACEYYRESAILCPTHFRALKLLGSALFGVGEYRAAVKALEEAIFIKPDYADAHCDLASALHAM 282 (660)
Q Consensus 203 ~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~ 282 (660)
+++.+|.++...|++++|+..++++++..|.+..++..+|.++...|++++|+..+++++...|.+..++..+|.++...
T Consensus 2 ~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 81 (100)
T cd00189 2 ALLNLGNLYYKLGDYDEALEYYEKALELDPDNADAYYNLAAAYYKLGKYEEALEDYEKALELDPDNAKAYYNLGLAYYKL 81 (100)
T ss_pred HHHHHHHHHHHHhcHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCcchhHHHHHHHHHHHH
Confidence 46789999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CChHHHHHHHHHHHHhCCC
Q 006120 283 GEDERAIEVFQKAIDLKPG 301 (660)
Q Consensus 283 g~~~~A~~~~~~al~~~p~ 301 (660)
|++++|...+++++...|.
T Consensus 82 ~~~~~a~~~~~~~~~~~~~ 100 (100)
T cd00189 82 GKYEEALEAYEKALELDPN 100 (100)
T ss_pred HhHHHHHHHHHHHHccCCC
Confidence 9999999999999988773
No 141
>PF13414 TPR_11: TPR repeat; PDB: 2HO1_B 2FI7_B 2DBA_A 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2PL2_B 3IEG_B 2FBN_A ....
Probab=98.92 E-value=5.3e-09 Score=81.98 Aligned_cols=65 Identities=38% Similarity=0.589 Sum_probs=29.4
Q ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhCC-ChHHHHHHHHHHHHhCC
Q 006120 236 RALKLLGSALFGVGEYRAAVKALEEAIFIKPDYADAHCDLASALHAMG-EDERAIEVFQKAIDLKP 300 (660)
Q Consensus 236 ~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g-~~~~A~~~~~~al~~~p 300 (660)
..|..+|.++...|++++|+..|+++++++|+++.+|+++|.++..+| ++++|+..++++++++|
T Consensus 4 ~~~~~~g~~~~~~~~~~~A~~~~~~ai~~~p~~~~~~~~~g~~~~~~~~~~~~A~~~~~~al~l~P 69 (69)
T PF13414_consen 4 EAWYNLGQIYFQQGDYEEAIEYFEKAIELDPNNAEAYYNLGLAYMKLGKDYEEAIEDFEKALKLDP 69 (69)
T ss_dssp HHHHHHHHHHHHTTHHHHHHHHHHHHHHHSTTHHHHHHHHHHHHHHTTTHHHHHHHHHHHHHHHST
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhCccHHHHHHHHHHHHHcCc
Confidence 344444444444444444444444444444444444444444444444 34444444444444443
No 142
>KOG2376 consensus Signal recognition particle, subunit Srp72 [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.90 E-value=1.3e-06 Score=91.93 Aligned_cols=167 Identities=17% Similarity=0.099 Sum_probs=125.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhccCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCC
Q 006120 95 EESTHDYAVFVKELGVLRNRADGARSREEAFDGHMAIGRVLYEHQLFKEALVSFKRACELQPTDVRPHFRAGNCLYVLGR 174 (660)
Q Consensus 95 ~~~~~~~g~~~~Al~~l~~a~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~ 174 (660)
..+....+.|++|+...+......... ...+..+.+.++.+..++|+..++ ..++.+.......|.+++++|+
T Consensus 53 vValIq~~ky~~ALk~ikk~~~~~~~~----~~~fEKAYc~Yrlnk~Dealk~~~---~~~~~~~~ll~L~AQvlYrl~~ 125 (652)
T KOG2376|consen 53 VVALIQLDKYEDALKLIKKNGALLVIN----SFFFEKAYCEYRLNKLDEALKTLK---GLDRLDDKLLELRAQVLYRLER 125 (652)
T ss_pred HhhhhhhhHHHHHHHHHHhcchhhhcc----hhhHHHHHHHHHcccHHHHHHHHh---cccccchHHHHHHHHHHHHHhh
Confidence 346678889999996555433211111 222789999999999999999998 4556666788889999999999
Q ss_pred HHHHHHHHHHHHHHhccCCCchh-----------------------chHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC
Q 006120 175 YREAKEEYLLALEAAETGGNQWA-----------------------YLLPQIYVNLGIALEGEGMVLSACEYYRESAILC 231 (660)
Q Consensus 175 ~~~A~~~~~~al~~~p~~~~~~~-----------------------~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~ 231 (660)
|++|...|+..++.+.+..+... ......++|.+.++...|+|.+|++.+++++.+.
T Consensus 126 ydealdiY~~L~kn~~dd~d~~~r~nl~a~~a~l~~~~~q~v~~v~e~syel~yN~Ac~~i~~gky~qA~elL~kA~~~~ 205 (652)
T KOG2376|consen 126 YDEALDIYQHLAKNNSDDQDEERRANLLAVAAALQVQLLQSVPEVPEDSYELLYNTACILIENGKYNQAIELLEKALRIC 205 (652)
T ss_pred HHHHHHHHHHHHhcCCchHHHHHHHHHHHHHHhhhHHHHHhccCCCcchHHHHHHHHHHHHhcccHHHHHHHHHHHHHHH
Confidence 99999999988654332211000 0145788999999999999999999999995541
Q ss_pred --------CC-------cHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCC
Q 006120 232 --------PT-------HFRALKLLGSALFGVGEYRAAVKALEEAIFIKPDY 268 (660)
Q Consensus 232 --------p~-------~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~ 268 (660)
.+ -..+...++.++..+|+.++|...|...+..+|.+
T Consensus 206 ~e~l~~~d~~eEeie~el~~IrvQlayVlQ~~Gqt~ea~~iy~~~i~~~~~D 257 (652)
T KOG2376|consen 206 REKLEDEDTNEEEIEEELNPIRVQLAYVLQLQGQTAEASSIYVDIIKRNPAD 257 (652)
T ss_pred HHhhcccccchhhHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHhcCCC
Confidence 11 13367789999999999999999999998886543
No 143
>PF04733 Coatomer_E: Coatomer epsilon subunit; InterPro: IPR006822 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the epsilon subunit of the coatomer complex, which is involved in the regulation of intracellular protein trafficking between the endoplasmic reticulum and the Golgi complex []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006890 retrograde vesicle-mediated transport, Golgi to ER, 0030126 COPI vesicle coat; PDB: 3MV2_B 3MV3_F 3MKR_A.
Probab=98.90 E-value=1.1e-08 Score=103.89 Aligned_cols=187 Identities=18% Similarity=0.124 Sum_probs=143.7
Q ss_pred HHHHHHHHHHHHhhccCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHH
Q 006120 104 FVKELGVLRNRADGARSREEAFDGHMAIGRVLYEHQLFKEALVSFKRACELQPTDVRPHFRAGNCLYVLGRYREAKEEYL 183 (660)
Q Consensus 104 ~~~Al~~l~~a~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~ 183 (660)
-++.+..+.+.+..... ..........|.++...|++++|+..+.+. .+.+.......++...++++.|.+.++
T Consensus 82 ~e~~l~~l~~~~~~~~~-~~~~~~~~~~A~i~~~~~~~~~AL~~l~~~-----~~lE~~al~Vqi~L~~~R~dlA~k~l~ 155 (290)
T PF04733_consen 82 KESALEELKELLADQAG-ESNEIVQLLAATILFHEGDYEEALKLLHKG-----GSLELLALAVQILLKMNRPDLAEKELK 155 (290)
T ss_dssp HHCHHHHHHHCCCTS----CHHHHHHHHHHHHCCCCHHHHHHCCCTTT-----TCHHHHHHHHHHHHHTT-HHHHHHHHH
T ss_pred hHHHHHHHHHHHHhccc-cccHHHHHHHHHHHHHcCCHHHHHHHHHcc-----CcccHHHHHHHHHHHcCCHHHHHHHHH
Confidence 34555555544332211 112244567788888999999999988764 567888888999999999999999999
Q ss_pred HHHHHhccCCCchhchHHHHHHHHHHHHHHCC--CHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHH
Q 006120 184 LALEAAETGGNQWAYLLPQIYVNLGIALEGEG--MVLSACEYYRESAILCPTHFRALKLLGSALFGVGEYRAAVKALEEA 261 (660)
Q Consensus 184 ~al~~~p~~~~~~~~~~~~~~~~la~~~~~~g--~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~a 261 (660)
.+-+.+++ ...+....+.+....| .+.+|.-.|++.....+..+..++.++.++..+|+|++|...++++
T Consensus 156 ~~~~~~eD--------~~l~qLa~awv~l~~g~e~~~~A~y~f~El~~~~~~t~~~lng~A~~~l~~~~~~eAe~~L~~a 227 (290)
T PF04733_consen 156 NMQQIDED--------SILTQLAEAWVNLATGGEKYQDAFYIFEELSDKFGSTPKLLNGLAVCHLQLGHYEEAEELLEEA 227 (290)
T ss_dssp HHHCCSCC--------HHHHHHHHHHHHHHHTTTCCCHHHHHHHHHHCCS--SHHHHHHHHHHHHHCT-HHHHHHHHHHH
T ss_pred HHHhcCCc--------HHHHHHHHHHHHHHhCchhHHHHHHHHHHHHhccCCCHHHHHHHHHHHHHhCCHHHHHHHHHHH
Confidence 98877665 4444444455555545 6999999999988877888999999999999999999999999999
Q ss_pred HHhCCCCHHHHHHHHHHHHhCCCh-HHHHHHHHHHHHhCCCCHH
Q 006120 262 IFIKPDYADAHCDLASALHAMGED-ERAIEVFQKAIDLKPGHVD 304 (660)
Q Consensus 262 l~~~p~~~~~~~~la~~~~~~g~~-~~A~~~~~~al~~~p~~~~ 304 (660)
+..+|+++.++.|++.+...+|+. +.+.+++.+....+|+++-
T Consensus 228 l~~~~~~~d~LaNliv~~~~~gk~~~~~~~~l~qL~~~~p~h~~ 271 (290)
T PF04733_consen 228 LEKDPNDPDTLANLIVCSLHLGKPTEAAERYLSQLKQSNPNHPL 271 (290)
T ss_dssp CCC-CCHHHHHHHHHHHHHHTT-TCHHHHHHHHHCHHHTTTSHH
T ss_pred HHhccCCHHHHHHHHHHHHHhCCChhHHHHHHHHHHHhCCCChH
Confidence 999999999999999999999999 6677888888889998764
No 144
>PF09976 TPR_21: Tetratricopeptide repeat; InterPro: IPR018704 This domain, found in various hypothetical prokaryotic proteins, has no known function.
Probab=98.89 E-value=9.1e-08 Score=87.16 Aligned_cols=124 Identities=21% Similarity=0.175 Sum_probs=85.3
Q ss_pred HHHHHcCCHHHHHHHHHHHHHhCCCC---HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhccCCCchhchHHHHHHHHHH
Q 006120 133 RVLYEHQLFKEALVSFKRACELQPTD---VRPHFRAGNCLYVLGRYREAKEEYLLALEAAETGGNQWAYLLPQIYVNLGI 209 (660)
Q Consensus 133 ~~~~~~g~~~~A~~~~~~al~~~p~~---~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~la~ 209 (660)
......++...+...+++.++..|+. ..+.+.+|.++...|++++|...|++++...|+.. +...+.+.++.
T Consensus 19 ~~~~~~~~~~~~~~~~~~l~~~~~~s~ya~~A~l~lA~~~~~~g~~~~A~~~l~~~~~~~~d~~-----l~~~a~l~LA~ 93 (145)
T PF09976_consen 19 LQALQAGDPAKAEAAAEQLAKDYPSSPYAALAALQLAKAAYEQGDYDEAKAALEKALANAPDPE-----LKPLARLRLAR 93 (145)
T ss_pred HHHHHCCCHHHHHHHHHHHHHHCCCChHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCCCHH-----HHHHHHHHHHH
Confidence 33345677777777777777777776 45666777778888888888888888777654321 14566777777
Q ss_pred HHHHCCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHH
Q 006120 210 ALEGEGMVLSACEYYRESAILCPTHFRALKLLGSALFGVGEYRAAVKALEEAI 262 (660)
Q Consensus 210 ~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al 262 (660)
++...|++++|+..++. +.-.+-.+.++..+|.++...|++++|+..|++|+
T Consensus 94 ~~~~~~~~d~Al~~L~~-~~~~~~~~~~~~~~Gdi~~~~g~~~~A~~~y~~Al 145 (145)
T PF09976_consen 94 ILLQQGQYDEALATLQQ-IPDEAFKALAAELLGDIYLAQGDYDEARAAYQKAL 145 (145)
T ss_pred HHHHcCCHHHHHHHHHh-ccCcchHHHHHHHHHHHHHHCCCHHHHHHHHHHhC
Confidence 77777777777777755 22333445566777777777777777777777664
No 145
>COG4785 NlpI Lipoprotein NlpI, contains TPR repeats [General function prediction only]
Probab=98.89 E-value=3.4e-07 Score=84.70 Aligned_cols=200 Identities=19% Similarity=0.096 Sum_probs=151.7
Q ss_pred CcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhccCCCchhch
Q 006120 120 SREEAFDGHMAIGRVLYEHQLFKEALVSFKRACELQPTDVRPHFRAGNCLYVLGRYREAKEEYLLALEAAETGGNQWAYL 199 (660)
Q Consensus 120 ~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~ 199 (660)
.+++.+..++..|..|-..|-+.-|..-|.+++.+.|..+.+++.+|..+...|+++.|.+.|...++++|.
T Consensus 60 ~~eeRA~l~fERGvlYDSlGL~~LAR~DftQaLai~P~m~~vfNyLG~Yl~~a~~fdaa~eaFds~~ELDp~-------- 131 (297)
T COG4785 60 TDEERAQLLFERGVLYDSLGLRALARNDFSQALAIRPDMPEVFNYLGIYLTQAGNFDAAYEAFDSVLELDPT-------- 131 (297)
T ss_pred ChHHHHHHHHHhcchhhhhhHHHHHhhhhhhhhhcCCCcHHHHHHHHHHHHhcccchHHHHHhhhHhccCCc--------
Confidence 566777889999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHCCCHHHHHHHH-HHHHHhCCCCHHHHHHHHHH
Q 006120 200 LPQIYVNLGIALEGEGMVLSACEYYRESAILCPTHFRALKLLGSALFGVGEYRAAVKAL-EEAIFIKPDYADAHCDLASA 278 (660)
Q Consensus 200 ~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~-~~al~~~p~~~~~~~~la~~ 278 (660)
...++.+.|..+.--|++.-|.+-+.+-.+.+|+++---..+-..- ..-++.+|...+ +++...+.+ ...|...+
T Consensus 132 y~Ya~lNRgi~~YY~gR~~LAq~d~~~fYQ~D~~DPfR~LWLYl~E-~k~dP~~A~tnL~qR~~~~d~e-~WG~~iV~-- 207 (297)
T COG4785 132 YNYAHLNRGIALYYGGRYKLAQDDLLAFYQDDPNDPFRSLWLYLNE-QKLDPKQAKTNLKQRAEKSDKE-QWGWNIVE-- 207 (297)
T ss_pred chHHHhccceeeeecCchHhhHHHHHHHHhcCCCChHHHHHHHHHH-hhCCHHHHHHHHHHHHHhccHh-hhhHHHHH--
Confidence 7789999999999999999999999999999999864322222222 234566666554 444444432 22222222
Q ss_pred HHhCCChHHHHHHHHHHHHhCCCC-------HHHHHHHHHHHHHhcCCCHHHHHHHHHHHHccc
Q 006120 279 LHAMGEDERAIEVFQKAIDLKPGH-------VDALYNLGGLYMDLGAGETEEAKKALKEALKMT 335 (660)
Q Consensus 279 ~~~~g~~~~A~~~~~~al~~~p~~-------~~a~~~La~~~~~~~~g~~~eA~~~~~~al~l~ 335 (660)
..+|+..+ ...++++.+-..++ .++++.||..+... |+.++|...|+-++.-+
T Consensus 208 -~yLgkiS~-e~l~~~~~a~a~~n~~~Ae~LTEtyFYL~K~~l~~--G~~~~A~~LfKLaiann 267 (297)
T COG4785 208 -FYLGKISE-ETLMERLKADATDNTSLAEHLTETYFYLGKYYLSL--GDLDEATALFKLAVANN 267 (297)
T ss_pred -HHHhhccH-HHHHHHHHhhccchHHHHHHHHHHHHHHHHHHhcc--ccHHHHHHHHHHHHHHh
Confidence 12233321 22344444433333 46889999999988 99999999999888654
No 146
>PF13414 TPR_11: TPR repeat; PDB: 2HO1_B 2FI7_B 2DBA_A 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2PL2_B 3IEG_B 2FBN_A ....
Probab=98.88 E-value=7.6e-09 Score=81.06 Aligned_cols=67 Identities=43% Similarity=0.666 Sum_probs=64.8
Q ss_pred CHHHHHHHHHHHHhCCChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCC-CHHHHHHHHHHHHcccC
Q 006120 268 YADAHCDLASALHAMGEDERAIEVFQKAIDLKPGHVDALYNLGGLYMDLGAG-ETEEAKKALKEALKMTN 336 (660)
Q Consensus 268 ~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~La~~~~~~~~g-~~~eA~~~~~~al~l~p 336 (660)
++..|..+|.++...|++++|+.+|+++++++|+++.+++++|.++..+ | ++++|+..++++++++|
T Consensus 2 ~a~~~~~~g~~~~~~~~~~~A~~~~~~ai~~~p~~~~~~~~~g~~~~~~--~~~~~~A~~~~~~al~l~P 69 (69)
T PF13414_consen 2 NAEAWYNLGQIYFQQGDYEEAIEYFEKAIELDPNNAEAYYNLGLAYMKL--GKDYEEAIEDFEKALKLDP 69 (69)
T ss_dssp SHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHSTTHHHHHHHHHHHHHHT--TTHHHHHHHHHHHHHHHST
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHh--CccHHHHHHHHHHHHHcCc
Confidence 5789999999999999999999999999999999999999999999999 9 79999999999999987
No 147
>PRK10153 DNA-binding transcriptional activator CadC; Provisional
Probab=98.86 E-value=1.1e-07 Score=103.99 Aligned_cols=144 Identities=13% Similarity=0.068 Sum_probs=90.3
Q ss_pred HHHHHHHHHHHHcCC---HHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhccCCCchhchHHH
Q 006120 126 DGHMAIGRVLYEHQL---FKEALVSFKRACELQPTDVRPHFRAGNCLYVLGRYREAKEEYLLALEAAETGGNQWAYLLPQ 202 (660)
Q Consensus 126 ~~~~~lg~~~~~~g~---~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~ 202 (660)
..++..|..+...++ ..+|+.+|+++++++|+.+.++..++.++.....+.. .
T Consensus 340 y~~~lrg~~~~~~~~~~~~~~A~~lle~Ai~ldP~~a~a~A~la~~~~~~~~~~~-------------~----------- 395 (517)
T PRK10153 340 LTLFYQAHHYLNSGDAKSLNKASDLLEEILKSEPDFTYAQAEKALADIVRHSQQP-------------L----------- 395 (517)
T ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHHhcCC-------------c-----------
Confidence 345667777776654 7899999999999999999999888887755322210 0
Q ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHh--CCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHH
Q 006120 203 IYVNLGIALEGEGMVLSACEYYRESAIL--CPTHFRALKLLGSALFGVGEYRAAVKALEEAIFIKPDYADAHCDLASALH 280 (660)
Q Consensus 203 ~~~~la~~~~~~g~~~~A~~~~~~al~~--~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~ 280 (660)
...+..++....++++.+ +|..+.++..+|..+...|++++|...+++|+.++| +..+|..+|.++.
T Consensus 396 ----------~~~~l~~a~~~~~~a~al~~~~~~~~~~~ala~~~~~~g~~~~A~~~l~rAl~L~p-s~~a~~~lG~~~~ 464 (517)
T PRK10153 396 ----------DEKQLAALSTELDNIVALPELNVLPRIYEILAVQALVKGKTDEAYQAINKAIDLEM-SWLNYVLLGKVYE 464 (517)
T ss_pred ----------cHHHHHHHHHHHHHhhhcccCcCChHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCC-CHHHHHHHHHHHH
Confidence 001123333333444442 444555566666666666666666666666666666 3566666666666
Q ss_pred hCCChHHHHHHHHHHHHhCCCCHH
Q 006120 281 AMGEDERAIEVFQKAIDLKPGHVD 304 (660)
Q Consensus 281 ~~g~~~~A~~~~~~al~~~p~~~~ 304 (660)
..|++++|++.|++|+.++|.++.
T Consensus 465 ~~G~~~eA~~~~~~A~~L~P~~pt 488 (517)
T PRK10153 465 LKGDNRLAADAYSTAFNLRPGENT 488 (517)
T ss_pred HcCCHHHHHHHHHHHHhcCCCCch
Confidence 666666666666666666666553
No 148
>PRK10153 DNA-binding transcriptional activator CadC; Provisional
Probab=98.86 E-value=1.1e-07 Score=104.16 Aligned_cols=139 Identities=17% Similarity=0.063 Sum_probs=116.6
Q ss_pred HHHHHHHHHHHHHHCCC---HHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHCC--------CHHHHHHHHHHHHHh--CC
Q 006120 200 LPQIYVNLGIALEGEGM---VLSACEYYRESAILCPTHFRALKLLGSALFGVG--------EYRAAVKALEEAIFI--KP 266 (660)
Q Consensus 200 ~~~~~~~la~~~~~~g~---~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g--------~~~~A~~~~~~al~~--~p 266 (660)
.+.-++..|.-+...++ ..+|+.+|+++++++|+++.++..++.++.... +...+....++++.+ .|
T Consensus 338 ~Ay~~~lrg~~~~~~~~~~~~~~A~~lle~Ai~ldP~~a~a~A~la~~~~~~~~~~~~~~~~l~~a~~~~~~a~al~~~~ 417 (517)
T PRK10153 338 AALTLFYQAHHYLNSGDAKSLNKASDLLEEILKSEPDFTYAQAEKALADIVRHSQQPLDEKQLAALSTELDNIVALPELN 417 (517)
T ss_pred HHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHhhhcccCc
Confidence 45556666766666554 789999999999999999999998888775532 345666667776664 67
Q ss_pred CCHHHHHHHHHHHHhCCChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHcccCChhHH
Q 006120 267 DYADAHCDLASALHAMGEDERAIEVFQKAIDLKPGHVDALYNLGGLYMDLGAGETEEAKKALKEALKMTNRVELH 341 (660)
Q Consensus 267 ~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~La~~~~~~~~g~~~eA~~~~~~al~l~p~~~~~ 341 (660)
.++.++..+|..+...|++++|...+++|+.++|+ ..+|..+|.++... |++++|.+.|++|+.++|....+
T Consensus 418 ~~~~~~~ala~~~~~~g~~~~A~~~l~rAl~L~ps-~~a~~~lG~~~~~~--G~~~eA~~~~~~A~~L~P~~pt~ 489 (517)
T PRK10153 418 VLPRIYEILAVQALVKGKTDEAYQAINKAIDLEMS-WLNYVLLGKVYELK--GDNRLAADAYSTAFNLRPGENTL 489 (517)
T ss_pred CChHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCC-HHHHHHHHHHHHHc--CCHHHHHHHHHHHHhcCCCCchH
Confidence 77889999999999999999999999999999994 88999999999998 99999999999999999986543
No 149
>COG4235 Cytochrome c biogenesis factor [Posttranslational modification, protein turnover, chaperones]
Probab=98.85 E-value=7.3e-08 Score=94.64 Aligned_cols=121 Identities=22% Similarity=0.144 Sum_probs=87.2
Q ss_pred HHHHHHHHHHHHHHhccCCCchhchHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHCC---CH
Q 006120 175 YREAKEEYLLALEAAETGGNQWAYLLPQIYVNLGIALEGEGMVLSACEYYRESAILCPTHFRALKLLGSALFGVG---EY 251 (660)
Q Consensus 175 ~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g---~~ 251 (660)
.++-+.-++.-+..+|+ .++-|..||.+|..+|+++.|...|.+++++.|++++.+..+|.++..+. ..
T Consensus 138 ~~~l~a~Le~~L~~nP~--------d~egW~~Lg~~ym~~~~~~~A~~AY~~A~rL~g~n~~~~~g~aeaL~~~a~~~~t 209 (287)
T COG4235 138 MEALIARLETHLQQNPG--------DAEGWDLLGRAYMALGRASDALLAYRNALRLAGDNPEILLGLAEALYYQAGQQMT 209 (287)
T ss_pred HHHHHHHHHHHHHhCCC--------CchhHHHHHHHHHHhcchhHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCCccc
Confidence 44555566666777777 56666777777777777777777777777777777777777777666542 35
Q ss_pred HHHHHHHHHHHHhCCCCHHHHHHHHHHHHhCCChHHHHHHHHHHHHhCCCCH
Q 006120 252 RAAVKALEEAIFIKPDYADAHCDLASALHAMGEDERAIEVFQKAIDLKPGHV 303 (660)
Q Consensus 252 ~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~ 303 (660)
.++...+++++.++|.+..+.+.||..+.++|++.+|+..++..+...|.+.
T Consensus 210 a~a~~ll~~al~~D~~~iral~lLA~~afe~g~~~~A~~~Wq~lL~~lp~~~ 261 (287)
T COG4235 210 AKARALLRQALALDPANIRALSLLAFAAFEQGDYAEAAAAWQMLLDLLPADD 261 (287)
T ss_pred HHHHHHHHHHHhcCCccHHHHHHHHHHHHHcccHHHHHHHHHHHHhcCCCCC
Confidence 6777777777777777777777777777777777777777777777766543
No 150
>KOG4648 consensus Uncharacterized conserved protein, contains LRR repeats [Function unknown]
Probab=98.85 E-value=2.4e-09 Score=104.87 Aligned_cols=199 Identities=16% Similarity=0.118 Sum_probs=144.1
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhccCCCchhchHHHHHHHH
Q 006120 128 HMAIGRVLYEHQLFKEALVSFKRACELQPTDVRPHFRAGNCLYVLGRYREAKEEYLLALEAAETGGNQWAYLLPQIYVNL 207 (660)
Q Consensus 128 ~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~l 207 (660)
.-..|..|+.+|.|++|+.||.+++..+|.++..+.+.|.+|+++..+..|...+..|+.++.. ...+|...
T Consensus 100 iKE~GN~yFKQgKy~EAIDCYs~~ia~~P~NpV~~~NRA~AYlk~K~FA~AE~DC~~AiaLd~~--------Y~KAYSRR 171 (536)
T KOG4648|consen 100 IKERGNTYFKQGKYEEAIDCYSTAIAVYPHNPVYHINRALAYLKQKSFAQAEEDCEAAIALDKL--------YVKAYSRR 171 (536)
T ss_pred HHHhhhhhhhccchhHHHHHhhhhhccCCCCccchhhHHHHHHHHHHHHHHHHhHHHHHHhhHH--------HHHHHHHH
Confidence 4568999999999999999999999999999999999999999999999999999999999987 89999999
Q ss_pred HHHHHHCCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHH---------C-CCHHHHHHHHHHHHHh-------------
Q 006120 208 GIALEGEGMVLSACEYYRESAILCPTHFRALKLLGSALFG---------V-GEYRAAVKALEEAIFI------------- 264 (660)
Q Consensus 208 a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~---------~-g~~~~A~~~~~~al~~------------- 264 (660)
+.+-..+|...+|.+-++.++++.|++.+....++.+-.- . | +-+|.+-..+++.+
T Consensus 172 ~~AR~~Lg~~~EAKkD~E~vL~LEP~~~ELkK~~a~i~Sl~E~~I~~KsT~G-~~~A~Q~~~Q~l~~K~~G~~Fsk~~~~ 250 (536)
T KOG4648|consen 172 MQARESLGNNMEAKKDCETVLALEPKNIELKKSLARINSLRERKIATKSTPG-FTPARQGMIQILPIKKPGYKFSKKAMR 250 (536)
T ss_pred HHHHHHHhhHHHHHHhHHHHHhhCcccHHHHHHHHHhcchHhhhHHhhcCCC-CCccccchhhhccccCcchhhhhhhcc
Confidence 9999999999999999999999999987655544433210 0 1 11222222222211
Q ss_pred -------------CCCCHHHHHHHHHHHHhCCChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCCCHHHHHHHHHHH
Q 006120 265 -------------KPDYADAHCDLASALHAMGEDERAIEVFQKAIDLKPGHVDALYNLGGLYMDLGAGETEEAKKALKEA 331 (660)
Q Consensus 265 -------------~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~La~~~~~~~~g~~~eA~~~~~~a 331 (660)
..++.....+ +..+.+..+++.|+.-..+++..+|........-+.+---. |...++...++.+
T Consensus 251 ~~~i~~~~~~~A~~~~~~~L~~~-~~~~~KI~~~~~~~~~~~~~~~~~~s~~~~~s~~~~A~T~~--~~~~E~K~~~~T~ 327 (536)
T KOG4648|consen 251 SVPVVDVVSPRATIDDSNQLRIS-DEDIDKIFNSNCGIIEEVKKTNPKPTPMPDTSGPPKAETIA--KTSKEVKPTKQTA 327 (536)
T ss_pred ccceeEeeccccccCccccCccc-HHHHHHHhhcchhHHHHHHhcCCCCCcCcccCCCchhHHHH--hhhhhcCcchhhe
Confidence 1111111222 45556666677777666666666665544444444444444 6666777777777
Q ss_pred HcccCCh
Q 006120 332 LKMTNRV 338 (660)
Q Consensus 332 l~l~p~~ 338 (660)
+.+.|..
T Consensus 328 ~~~~P~~ 334 (536)
T KOG4648|consen 328 VKVAPAV 334 (536)
T ss_pred eeecccc
Confidence 7777653
No 151
>KOG4340 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.84 E-value=1e-07 Score=91.97 Aligned_cols=188 Identities=20% Similarity=0.158 Sum_probs=160.3
Q ss_pred HHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhccCCCchhchHHHHHHHHHHHHHHC
Q 006120 135 LYEHQLFKEALVSFKRACELQPTDVRPHFRAGNCLYVLGRYREAKEEYLLALEAAETGGNQWAYLLPQIYVNLGIALEGE 214 (660)
Q Consensus 135 ~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~la~~~~~~ 214 (660)
+....+|+.|++++..-.+.+|.+...+..+|.||+...++..|..+|++.-.+.|. .....+..+..+.+.
T Consensus 20 lI~d~ry~DaI~~l~s~~Er~p~~rAgLSlLgyCYY~~Q~f~~AA~CYeQL~ql~P~--------~~qYrlY~AQSLY~A 91 (459)
T KOG4340|consen 20 LIRDARYADAIQLLGSELERSPRSRAGLSLLGYCYYRLQEFALAAECYEQLGQLHPE--------LEQYRLYQAQSLYKA 91 (459)
T ss_pred HHHHhhHHHHHHHHHHHHhcCccchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhChH--------HHHHHHHHHHHHHHh
Confidence 467788999999999999999999999999999999999999999999999999999 788888889999999
Q ss_pred CCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhCCChHHHHHHHHH
Q 006120 215 GMVLSACEYYRESAILCPTHFRALKLLGSALFGVGEYRAAVKALEEAIFIKPDYADAHCDLASALHAMGEDERAIEVFQK 294 (660)
Q Consensus 215 g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~ 294 (660)
+.+..|+...........-.......-+.+.+..+++..+....++.- ..+++....+.|.+..+.|++++|++-|+.
T Consensus 92 ~i~ADALrV~~~~~D~~~L~~~~lqLqaAIkYse~Dl~g~rsLveQlp--~en~Ad~~in~gCllykegqyEaAvqkFqa 169 (459)
T KOG4340|consen 92 CIYADALRVAFLLLDNPALHSRVLQLQAAIKYSEGDLPGSRSLVEQLP--SENEADGQINLGCLLYKEGQYEAAVQKFQA 169 (459)
T ss_pred cccHHHHHHHHHhcCCHHHHHHHHHHHHHHhcccccCcchHHHHHhcc--CCCccchhccchheeeccccHHHHHHHHHH
Confidence 999999988876544311223455556777788888888877666532 125688899999999999999999999999
Q ss_pred HHHhCCCCHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHcc
Q 006120 295 AIDLKPGHVDALYNLGGLYMDLGAGETEEAKKALKEALKM 334 (660)
Q Consensus 295 al~~~p~~~~a~~~La~~~~~~~~g~~~eA~~~~~~al~l 334 (660)
+++...-++-.-++++.++... |++..|+++..+.++.
T Consensus 170 AlqvsGyqpllAYniALaHy~~--~qyasALk~iSEIieR 207 (459)
T KOG4340|consen 170 ALQVSGYQPLLAYNLALAHYSS--RQYASALKHISEIIER 207 (459)
T ss_pred HHhhcCCCchhHHHHHHHHHhh--hhHHHHHHHHHHHHHh
Confidence 9999988899999999999998 9999999988777654
No 152
>PF09976 TPR_21: Tetratricopeptide repeat; InterPro: IPR018704 This domain, found in various hypothetical prokaryotic proteins, has no known function.
Probab=98.83 E-value=2.2e-07 Score=84.67 Aligned_cols=118 Identities=29% Similarity=0.282 Sum_probs=103.2
Q ss_pred HHCCCHHHHHHHHHHHHHhCCCc---HHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCC---HHHHHHHHHHHHhCCCh
Q 006120 212 EGEGMVLSACEYYRESAILCPTH---FRALKLLGSALFGVGEYRAAVKALEEAIFIKPDY---ADAHCDLASALHAMGED 285 (660)
Q Consensus 212 ~~~g~~~~A~~~~~~al~~~p~~---~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~---~~~~~~la~~~~~~g~~ 285 (660)
...++...+...+++.+...|+. ..+.+.+|.++...|++++|...|++++...|+. ..+...+|.++..+|++
T Consensus 22 ~~~~~~~~~~~~~~~l~~~~~~s~ya~~A~l~lA~~~~~~g~~~~A~~~l~~~~~~~~d~~l~~~a~l~LA~~~~~~~~~ 101 (145)
T PF09976_consen 22 LQAGDPAKAEAAAEQLAKDYPSSPYAALAALQLAKAAYEQGDYDEAKAALEKALANAPDPELKPLARLRLARILLQQGQY 101 (145)
T ss_pred HHCCCHHHHHHHHHHHHHHCCCChHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCCCHHHHHHHHHHHHHHHHHcCCH
Confidence 35889999999999999999988 5678889999999999999999999999988665 45788899999999999
Q ss_pred HHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCCCHHHHHHHHHHHH
Q 006120 286 ERAIEVFQKAIDLKPGHVDALYNLGGLYMDLGAGETEEAKKALKEAL 332 (660)
Q Consensus 286 ~~A~~~~~~al~~~p~~~~a~~~La~~~~~~~~g~~~eA~~~~~~al 332 (660)
++|+..++. +.-.+-.+.++..+|.++... |++++|+..|++|+
T Consensus 102 d~Al~~L~~-~~~~~~~~~~~~~~Gdi~~~~--g~~~~A~~~y~~Al 145 (145)
T PF09976_consen 102 DEALATLQQ-IPDEAFKALAAELLGDIYLAQ--GDYDEARAAYQKAL 145 (145)
T ss_pred HHHHHHHHh-ccCcchHHHHHHHHHHHHHHC--CCHHHHHHHHHHhC
Confidence 999999976 333444577889999999999 99999999999885
No 153
>KOG1915 consensus Cell cycle control protein (crooked neck) [Cell cycle control, cell division, chromosome partitioning]
Probab=98.82 E-value=3.4e-06 Score=86.55 Aligned_cols=264 Identities=11% Similarity=-0.015 Sum_probs=184.1
Q ss_pred HHHHhHHHHHHHHHHHHHHHHHHHHHHHHHhhccCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC--HHHHH
Q 006120 86 EISEKRVFWEESTHDYAVFVKELGVLRNRADGARSREEAFDGHMAIGRVLYEHQLFKEALVSFKRACELQPTD--VRPHF 163 (660)
Q Consensus 86 ~~~~~~~~l~~~~~~~g~~~~Al~~l~~a~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~--~~~~~ 163 (660)
.....++.++..-...|+...+...|..+++...+...........|..-..+..++.|..+|+-+++.-|.+ ...+-
T Consensus 205 P~v~~wikyarFE~k~g~~~~aR~VyerAie~~~~d~~~e~lfvaFA~fEe~qkE~ERar~iykyAld~~pk~raeeL~k 284 (677)
T KOG1915|consen 205 PKVSNWIKYARFEEKHGNVALARSVYERAIEFLGDDEEAEILFVAFAEFEERQKEYERARFIYKYALDHIPKGRAEELYK 284 (677)
T ss_pred ccHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcccHHHHHH
Confidence 3446677778888888999999999999998888776666666677777778889999999999999988876 33333
Q ss_pred HHHHHHHHcCCHH---HHH-----HHHHHHHHHhccCCCchhchHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCC--C
Q 006120 164 RAGNCLYVLGRYR---EAK-----EEYLLALEAAETGGNQWAYLLPQIYVNLGIALEGEGMVLSACEYYRESAILCP--T 233 (660)
Q Consensus 164 ~la~~~~~~g~~~---~A~-----~~~~~al~~~p~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p--~ 233 (660)
.....--+-|+.. +++ --|++.++.+|.+-+.|.. .....-..|..-.-..-|+.|+.-.--+-+..- .
T Consensus 285 ~~~~fEKqfGd~~gIEd~Iv~KRk~qYE~~v~~np~nYDsWfd-ylrL~e~~g~~~~Ire~yErAIanvpp~~ekr~W~R 363 (677)
T KOG1915|consen 285 KYTAFEKQFGDKEGIEDAIVGKRKFQYEKEVSKNPYNYDSWFD-YLRLEESVGDKDRIRETYERAIANVPPASEKRYWRR 363 (677)
T ss_pred HHHHHHHHhcchhhhHHHHhhhhhhHHHHHHHhCCCCchHHHH-HHHHHHhcCCHHHHHHHHHHHHccCCchhHHHHHHH
Confidence 3333333445432 222 3467778888888777753 222222334444444556777655444322211 1
Q ss_pred cHHHHHHHHHH-HHHCCCHHHHHHHHHHHHHhCCCC----HHHHHHHHHHHHhCCChHHHHHHHHHHHHhCCCCHHHHHH
Q 006120 234 HFRALKLLGSA-LFGVGEYRAAVKALEEAIFIKPDY----ADAHCDLASALHAMGEDERAIEVFQKAIDLKPGHVDALYN 308 (660)
Q Consensus 234 ~~~~~~~lg~~-~~~~g~~~~A~~~~~~al~~~p~~----~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~ 308 (660)
....|.+.+.. -....+.+.+.+.|+.++++-|.. +.+|...|....++.+...|.+.+-.|+-..|.+. ..-.
T Consensus 364 YIYLWinYalyeEle~ed~ertr~vyq~~l~lIPHkkFtFaKiWlmyA~feIRq~~l~~ARkiLG~AIG~cPK~K-lFk~ 442 (677)
T KOG1915|consen 364 YIYLWINYALYEELEAEDVERTRQVYQACLDLIPHKKFTFAKIWLMYAQFEIRQLNLTGARKILGNAIGKCPKDK-LFKG 442 (677)
T ss_pred HHHHHHHHHHHHHHHhhhHHHHHHHHHHHHhhcCcccchHHHHHHHHHHHHHHHcccHHHHHHHHHHhccCCchh-HHHH
Confidence 23445555432 245789999999999999998865 78899999999999999999999999999999853 3444
Q ss_pred HHHHHHHhcCCCHHHHHHHHHHHHcccCCh-hHHHHHHHHHHHHHH
Q 006120 309 LGGLYMDLGAGETEEAKKALKEALKMTNRV-ELHDAVSHLKQLQKK 353 (660)
Q Consensus 309 La~~~~~~~~g~~~eA~~~~~~al~l~p~~-~~~~~~~~l~~l~~~ 353 (660)
...+-.++ ++++.-...|++-++..|.. ..+...+.|+...+.
T Consensus 443 YIelElqL--~efDRcRkLYEkfle~~Pe~c~~W~kyaElE~~Lgd 486 (677)
T KOG1915|consen 443 YIELELQL--REFDRCRKLYEKFLEFSPENCYAWSKYAELETSLGD 486 (677)
T ss_pred HHHHHHHH--hhHHHHHHHHHHHHhcChHhhHHHHHHHHHHHHhhh
Confidence 44555566 89999999999999999873 345555555555443
No 154
>KOG0543 consensus FKBP-type peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=98.80 E-value=1.3e-07 Score=96.13 Aligned_cols=135 Identities=23% Similarity=0.248 Sum_probs=115.5
Q ss_pred HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCc---------------HHHHHHHHHHHHHCCCHHHHHHHHHHHHHh
Q 006120 200 LPQIYVNLGIALEGEGMVLSACEYYRESAILCPTH---------------FRALKLLGSALFGVGEYRAAVKALEEAIFI 264 (660)
Q Consensus 200 ~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~---------------~~~~~~lg~~~~~~g~~~~A~~~~~~al~~ 264 (660)
.+......|+.+.+.|+|..|...|++++..-... ..++.|++.++.++++|.+|+....++|.+
T Consensus 207 ~A~~~ke~Gn~~fK~gk~~~A~~~Yerav~~l~~~~~~~~ee~~~~~~~k~~~~lNlA~c~lKl~~~~~Ai~~c~kvLe~ 286 (397)
T KOG0543|consen 207 AADRKKERGNVLFKEGKFKLAKKRYERAVSFLEYRRSFDEEEQKKAEALKLACHLNLAACYLKLKEYKEAIESCNKVLEL 286 (397)
T ss_pred HHHHHHHhhhHHHhhchHHHHHHHHHHHHHHhhccccCCHHHHHHHHHHHHHHhhHHHHHHHhhhhHHHHHHHHHHHHhc
Confidence 34455667889999999999999999998753211 347899999999999999999999999999
Q ss_pred CCCCHHHHHHHHHHHHhCCChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCCCHH-HHHHHHHHHHcccC
Q 006120 265 KPDYADAHCDLASALHAMGEDERAIEVFQKAIDLKPGHVDALYNLGGLYMDLGAGETE-EAKKALKEALKMTN 336 (660)
Q Consensus 265 ~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~La~~~~~~~~g~~~-eA~~~~~~al~l~p 336 (660)
+|++..+++..|.++..+|+++.|+..|++++++.|+|..+...|..+.... .++. ...+.|.+++..-+
T Consensus 287 ~~~N~KALyRrG~A~l~~~e~~~A~~df~ka~k~~P~Nka~~~el~~l~~k~--~~~~~kekk~y~~mF~k~~ 357 (397)
T KOG0543|consen 287 DPNNVKALYRRGQALLALGEYDLARDDFQKALKLEPSNKAARAELIKLKQKI--REYEEKEKKMYANMFAKLA 357 (397)
T ss_pred CCCchhHHHHHHHHHHhhccHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHH--HHHHHHHHHHHHHHhhccc
Confidence 9999999999999999999999999999999999999999999998888776 4444 44778888876654
No 155
>KOG0543 consensus FKBP-type peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=98.80 E-value=5.8e-08 Score=98.51 Aligned_cols=101 Identities=21% Similarity=0.226 Sum_probs=91.4
Q ss_pred HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHH
Q 006120 200 LPQIYVNLGIALEGEGMVLSACEYYRESAILCPTHFRALKLLGSALFGVGEYRAAVKALEEAIFIKPDYADAHCDLASAL 279 (660)
Q Consensus 200 ~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~ 279 (660)
...++.|++.++.++++|.+|+....++|.++|+|..+++..|.++..+|+++.|+..|++++++.|+|..+...+..+.
T Consensus 256 k~~~~lNlA~c~lKl~~~~~Ai~~c~kvLe~~~~N~KALyRrG~A~l~~~e~~~A~~df~ka~k~~P~Nka~~~el~~l~ 335 (397)
T KOG0543|consen 256 KLACHLNLAACYLKLKEYKEAIESCNKVLELDPNNVKALYRRGQALLALGEYDLARDDFQKALKLEPSNKAARAELIKLK 335 (397)
T ss_pred HHHHhhHHHHHHHhhhhHHHHHHHHHHHHhcCCCchhHHHHHHHHHHhhccHHHHHHHHHHHHHhCCCcHHHHHHHHHHH
Confidence 45788999999999999999999999999999999999999999999999999999999999999999999999999988
Q ss_pred HhCCChHHH-HHHHHHHHHhCC
Q 006120 280 HAMGEDERA-IEVFQKAIDLKP 300 (660)
Q Consensus 280 ~~~g~~~~A-~~~~~~al~~~p 300 (660)
.+..++.+. .+.|.+++..-+
T Consensus 336 ~k~~~~~~kekk~y~~mF~k~~ 357 (397)
T KOG0543|consen 336 QKIREYEEKEKKMYANMFAKLA 357 (397)
T ss_pred HHHHHHHHHHHHHHHHHhhccc
Confidence 877766555 677777776543
No 156
>PRK11906 transcriptional regulator; Provisional
Probab=98.80 E-value=2.9e-07 Score=95.84 Aligned_cols=162 Identities=12% Similarity=0.081 Sum_probs=137.1
Q ss_pred HHHHHHHHHHHcC---CHHHHHHHHHHHH---HhCCCCHHHHHHHHHHHHHc---------CCHHHHHHHHHHHHHHhcc
Q 006120 127 GHMAIGRVLYEHQ---LFKEALVSFKRAC---ELQPTDVRPHFRAGNCLYVL---------GRYREAKEEYLLALEAAET 191 (660)
Q Consensus 127 ~~~~lg~~~~~~g---~~~~A~~~~~~al---~~~p~~~~~~~~la~~~~~~---------g~~~~A~~~~~~al~~~p~ 191 (660)
.++..|...+..+ ..+.|+.+|.+++ +++|+.+.++..++.++... ....+|....+++++++|.
T Consensus 257 d~ylrg~~~~~~~t~~~~~~Al~lf~ra~~~~~ldp~~a~a~~~lA~~h~~~~~~g~~~~~~~~~~a~~~A~rAveld~~ 336 (458)
T PRK11906 257 DEMLAGKKELYDFTPESIYRAMTIFDRLQNKSDIQTLKTECYCLLAECHMSLALHGKSELELAAQKALELLDYVSDITTV 336 (458)
T ss_pred HHHHHHHHHhhccCHHHHHHHHHHHHHHhhcccCCcccHHHHHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHhcCCC
Confidence 4477777776655 4678999999999 89999999999999998765 2356889999999999999
Q ss_pred CCCchhchHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHH
Q 006120 192 GGNQWAYLLPQIYVNLGIALEGEGMVLSACEYYRESAILCPTHFRALKLLGSALFGVGEYRAAVKALEEAIFIKPDYADA 271 (660)
Q Consensus 192 ~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~ 271 (660)
.+.++..+|.++...++++.|...|++|+.++|+.+.+++..|.+..-.|+.++|.+.++++++++|....+
T Consensus 337 --------Da~a~~~~g~~~~~~~~~~~a~~~f~rA~~L~Pn~A~~~~~~~~~~~~~G~~~~a~~~i~~alrLsP~~~~~ 408 (458)
T PRK11906 337 --------DGKILAIMGLITGLSGQAKVSHILFEQAKIHSTDIASLYYYRALVHFHNEKIEEARICIDKSLQLEPRRRKA 408 (458)
T ss_pred --------CHHHHHHHHHHHHhhcchhhHHHHHHHHhhcCCccHHHHHHHHHHHHHcCCHHHHHHHHHHHhccCchhhHH
Confidence 899999999999999999999999999999999999999999999999999999999999999999987554
Q ss_pred HHHHHHH-HHhCCChHHHHHHHHHHH
Q 006120 272 HCDLASA-LHAMGEDERAIEVFQKAI 296 (660)
Q Consensus 272 ~~~la~~-~~~~g~~~~A~~~~~~al 296 (660)
-...-.+ .+-....++|+..|-+--
T Consensus 409 ~~~~~~~~~~~~~~~~~~~~~~~~~~ 434 (458)
T PRK11906 409 VVIKECVDMYVPNPLKNNIKLYYKET 434 (458)
T ss_pred HHHHHHHHHHcCCchhhhHHHHhhcc
Confidence 4333333 345567888888776543
No 157
>PF12895 Apc3: Anaphase-promoting complex, cyclosome, subunit 3; PDB: 3KAE_D 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2XPI_A 3ULQ_A.
Probab=98.77 E-value=2.4e-08 Score=81.62 Aligned_cols=80 Identities=31% Similarity=0.461 Sum_probs=44.1
Q ss_pred CCCHHHHHHHHHHHHHhCCC--cHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhCCChHHHHHH
Q 006120 214 EGMVLSACEYYRESAILCPT--HFRALKLLGSALFGVGEYRAAVKALEEAIFIKPDYADAHCDLASALHAMGEDERAIEV 291 (660)
Q Consensus 214 ~g~~~~A~~~~~~al~~~p~--~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~ 291 (660)
+|++++|+.+++++++..|. +...++.+|.++++.|++++|+..+++ ...++.+...++.+|.++.++|++++|+..
T Consensus 2 ~~~y~~Ai~~~~k~~~~~~~~~~~~~~~~la~~~~~~~~y~~A~~~~~~-~~~~~~~~~~~~l~a~~~~~l~~y~eAi~~ 80 (84)
T PF12895_consen 2 QGNYENAIKYYEKLLELDPTNPNSAYLYNLAQCYFQQGKYEEAIELLQK-LKLDPSNPDIHYLLARCLLKLGKYEEAIKA 80 (84)
T ss_dssp TT-HHHHHHHHHHHHHHHCGTHHHHHHHHHHHHHHHTTHHHHHHHHHHC-HTHHHCHHHHHHHHHHHHHHTT-HHHHHHH
T ss_pred CccHHHHHHHHHHHHHHCCCChhHHHHHHHHHHHHHCCCHHHHHHHHHH-hCCCCCCHHHHHHHHHHHHHhCCHHHHHHH
Confidence 45555666666666655553 344455556666666666666666555 555555555555556666666666666555
Q ss_pred HHH
Q 006120 292 FQK 294 (660)
Q Consensus 292 ~~~ 294 (660)
+++
T Consensus 81 l~~ 83 (84)
T PF12895_consen 81 LEK 83 (84)
T ss_dssp HHH
T ss_pred Hhc
Confidence 554
No 158
>COG0457 NrfG FOG: TPR repeat [General function prediction only]
Probab=98.75 E-value=6.6e-06 Score=79.58 Aligned_cols=207 Identities=27% Similarity=0.333 Sum_probs=174.4
Q ss_pred HhHHHHHHHHHHHHHHHHHHHHHHHHHhhccCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHH-
Q 006120 89 EKRVFWEESTHDYAVFVKELGVLRNRADGARSREEAFDGHMAIGRVLYEHQLFKEALVSFKRACELQPTDVRPHFRAGN- 167 (660)
Q Consensus 89 ~~~~~l~~~~~~~g~~~~Al~~l~~a~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~- 167 (660)
......+......+.+..++..+...... .........+...+......+++..++..+..++...+.........+.
T Consensus 60 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 138 (291)
T COG0457 60 GLLLLLALALLKLGRLEEALELLEKALEL-ELLPNLAEALLNLGLLLEALGKYEEALELLEKALALDPDPDLAEALLALG 138 (291)
T ss_pred HHHHHHHHHHHHcccHHHHHHHHHHHHhh-hhccchHHHHHHHHHHHHHHhhHHHHHHHHHHHHcCCCCcchHHHHHHHH
Confidence 34444566677777888888888877753 2233344778899999999999999999999999988877666666666
Q ss_pred HHHHcCCHHHHHHHHHHHHHHhccCCCchhchHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCC-cHHHHHHHHHHHH
Q 006120 168 CLYVLGRYREAKEEYLLALEAAETGGNQWAYLLPQIYVNLGIALEGEGMVLSACEYYRESAILCPT-HFRALKLLGSALF 246 (660)
Q Consensus 168 ~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~~lg~~~~ 246 (660)
++...|++++|...+.+++...|.... ....+...+..+...+++++|+..+.+++...+. ....+..++..+.
T Consensus 139 ~~~~~~~~~~a~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~ 213 (291)
T COG0457 139 ALYELGDYEEALELYEKALELDPELNE-----LAEALLALGALLEALGRYEEALELLEKALKLNPDDDAEALLNLGLLYL 213 (291)
T ss_pred HHHHcCCHHHHHHHHHHHHhcCCCccc-----hHHHHHHhhhHHHHhcCHHHHHHHHHHHHhhCcccchHHHHHhhHHHH
Confidence 899999999999999999886652000 5667777777788999999999999999999999 7999999999999
Q ss_pred HCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhCCChHHHHHHHHHHHHhCCC
Q 006120 247 GVGEYRAAVKALEEAIFIKPDYADAHCDLASALHAMGEDERAIEVFQKAIDLKPG 301 (660)
Q Consensus 247 ~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~ 301 (660)
..+++.+|...+..++...|.....+..++..+...+.++++...+.+++...|.
T Consensus 214 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 268 (291)
T COG0457 214 KLGKYEEALEYYEKALELDPDNAEALYNLALLLLELGRYEEALEALEKALELDPD 268 (291)
T ss_pred HcccHHHHHHHHHHHHhhCcccHHHHhhHHHHHHHcCCHHHHHHHHHHHHHhCcc
Confidence 9999999999999999999987888888888888888899999999999999987
No 159
>PF13432 TPR_16: Tetratricopeptide repeat; PDB: 3CVP_A 3CVL_A 3CVQ_A 3CV0_A 2GW1_B 3CVN_A 3QKY_A 2PL2_B.
Probab=98.75 E-value=3.6e-08 Score=76.18 Aligned_cols=62 Identities=31% Similarity=0.553 Sum_probs=30.5
Q ss_pred HHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhCCChHHHHHHHHHHHHhCCCC
Q 006120 241 LGSALFGVGEYRAAVKALEEAIFIKPDYADAHCDLASALHAMGEDERAIEVFQKAIDLKPGH 302 (660)
Q Consensus 241 lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~ 302 (660)
+|..+...|++++|+..|+++++..|+++.+|..+|.++..+|++++|+..|+++++.+|++
T Consensus 3 ~a~~~~~~g~~~~A~~~~~~~l~~~P~~~~a~~~lg~~~~~~g~~~~A~~~~~~a~~~~P~~ 64 (65)
T PF13432_consen 3 LARALYQQGDYDEAIAAFEQALKQDPDNPEAWYLLGRILYQQGRYDEALAYYERALELDPDN 64 (65)
T ss_dssp HHHHHHHCTHHHHHHHHHHHHHCCSTTHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHSTT-
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCC
Confidence 44444555555555555555555555555555555555555555555555555555555443
No 160
>PF12895 Apc3: Anaphase-promoting complex, cyclosome, subunit 3; PDB: 3KAE_D 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2XPI_A 3ULQ_A.
Probab=98.72 E-value=7e-08 Score=78.84 Aligned_cols=81 Identities=22% Similarity=0.315 Sum_probs=62.8
Q ss_pred cCCHHHHHHHHHHHHHhCCC--CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhccCCCchhchHHHHHHHHHHHHHHCC
Q 006120 138 HQLFKEALVSFKRACELQPT--DVRPHFRAGNCLYVLGRYREAKEEYLLALEAAETGGNQWAYLLPQIYVNLGIALEGEG 215 (660)
Q Consensus 138 ~g~~~~A~~~~~~al~~~p~--~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~la~~~~~~g 215 (660)
+|++++|+.+++++++..|. +...++.+|.+++..|++++|+..+++ .+.++. .....+.+|.++..+|
T Consensus 2 ~~~y~~Ai~~~~k~~~~~~~~~~~~~~~~la~~~~~~~~y~~A~~~~~~-~~~~~~--------~~~~~~l~a~~~~~l~ 72 (84)
T PF12895_consen 2 QGNYENAIKYYEKLLELDPTNPNSAYLYNLAQCYFQQGKYEEAIELLQK-LKLDPS--------NPDIHYLLARCLLKLG 72 (84)
T ss_dssp TT-HHHHHHHHHHHHHHHCGTHHHHHHHHHHHHHHHTTHHHHHHHHHHC-HTHHHC--------HHHHHHHHHHHHHHTT
T ss_pred CccHHHHHHHHHHHHHHCCCChhHHHHHHHHHHHHHCCCHHHHHHHHHH-hCCCCC--------CHHHHHHHHHHHHHhC
Confidence 57888888888888888874 456677788888888888888888888 666666 6677777788888888
Q ss_pred CHHHHHHHHHHH
Q 006120 216 MVLSACEYYRES 227 (660)
Q Consensus 216 ~~~~A~~~~~~a 227 (660)
++++|+..++++
T Consensus 73 ~y~eAi~~l~~~ 84 (84)
T PF12895_consen 73 KYEEAIKALEKA 84 (84)
T ss_dssp -HHHHHHHHHHH
T ss_pred CHHHHHHHHhcC
Confidence 888888888764
No 161
>PF13432 TPR_16: Tetratricopeptide repeat; PDB: 3CVP_A 3CVL_A 3CVQ_A 3CV0_A 2GW1_B 3CVN_A 3QKY_A 2PL2_B.
Probab=98.71 E-value=6.4e-08 Score=74.76 Aligned_cols=65 Identities=28% Similarity=0.331 Sum_probs=60.5
Q ss_pred HHHHHHHHHCCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCH
Q 006120 205 VNLGIALEGEGMVLSACEYYRESAILCPTHFRALKLLGSALFGVGEYRAAVKALEEAIFIKPDYA 269 (660)
Q Consensus 205 ~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~ 269 (660)
+.+|..+...|++++|+..|+++++..|+++.++..+|.++..+|++++|+..|+++++++|+++
T Consensus 1 ~~~a~~~~~~g~~~~A~~~~~~~l~~~P~~~~a~~~lg~~~~~~g~~~~A~~~~~~a~~~~P~~p 65 (65)
T PF13432_consen 1 YALARALYQQGDYDEAIAAFEQALKQDPDNPEAWYLLGRILYQQGRYDEALAYYERALELDPDNP 65 (65)
T ss_dssp HHHHHHHHHCTHHHHHHHHHHHHHCCSTTHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHSTT-H
T ss_pred ChHHHHHHHcCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCCC
Confidence 35789999999999999999999999999999999999999999999999999999999999875
No 162
>KOG3785 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.71 E-value=1.7e-06 Score=85.58 Aligned_cols=206 Identities=16% Similarity=0.127 Sum_probs=151.4
Q ss_pred HHHHHHHHHHHHHHHHhhccCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHH
Q 006120 100 DYAVFVKELGVLRNRADGARSREEAFDGHMAIGRVLYEHQLFKEALVSFKRACELQPTDVRPHFRAGNCLYVLGRYREAK 179 (660)
Q Consensus 100 ~~g~~~~Al~~l~~a~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~ 179 (660)
...+|..|+..++-...... ++.-.....+|.+++..|+|++|+..|.-+.+.+.-+.+.+.++|-+++-+|.|.+|.
T Consensus 34 s~rDytGAislLefk~~~~~--EEE~~~~lWia~C~fhLgdY~~Al~~Y~~~~~~~~~~~el~vnLAcc~FyLg~Y~eA~ 111 (557)
T KOG3785|consen 34 SNRDYTGAISLLEFKLNLDR--EEEDSLQLWIAHCYFHLGDYEEALNVYTFLMNKDDAPAELGVNLACCKFYLGQYIEAK 111 (557)
T ss_pred hcccchhHHHHHHHhhccch--hhhHHHHHHHHHHHHhhccHHHHHHHHHHHhccCCCCcccchhHHHHHHHHHHHHHHH
Confidence 34567778877776553332 2223556678999999999999999999998877667899999999999999999998
Q ss_pred HHHHHHHHHhccCCCchhchHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHCCCHHHHHHHHH
Q 006120 180 EEYLLALEAAETGGNQWAYLLPQIYVNLGIALEGEGMVLSACEYYRESAILCPTHFRALKLLGSALFGVGEYRAAVKALE 259 (660)
Q Consensus 180 ~~~~~al~~~p~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~ 259 (660)
....++ |+.+- ....++.++ .+.|+-.+-. .|...+. +..+-...|+.+.+..-.|++|+..|.
T Consensus 112 ~~~~ka----~k~pL-----~~RLlfhla---hklndEk~~~-~fh~~Lq---D~~EdqLSLAsvhYmR~HYQeAIdvYk 175 (557)
T KOG3785|consen 112 SIAEKA----PKTPL-----CIRLLFHLA---HKLNDEKRIL-TFHSSLQ---DTLEDQLSLASVHYMRMHYQEAIDVYK 175 (557)
T ss_pred HHHhhC----CCChH-----HHHHHHHHH---HHhCcHHHHH-HHHHHHh---hhHHHHHhHHHHHHHHHHHHHHHHHHH
Confidence 877654 33110 233334333 4455543333 3333332 223455677888888888999999999
Q ss_pred HHHHhCCCCHHHHHHHHHHHHhCCChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCCCHHH
Q 006120 260 EAIFIKPDYADAHCDLASALHAMGEDERAIEVFQKAIDLKPGHVDALYNLGGLYMDLGAGETEE 323 (660)
Q Consensus 260 ~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~La~~~~~~~~g~~~e 323 (660)
+.+.-+|+....-..+|.||.++.-++-+.+.+.-.++..|+.+-+...++-....+-+|+..+
T Consensus 176 rvL~dn~ey~alNVy~ALCyyKlDYydvsqevl~vYL~q~pdStiA~NLkacn~fRl~ngr~ae 239 (557)
T KOG3785|consen 176 RVLQDNPEYIALNVYMALCYYKLDYYDVSQEVLKVYLRQFPDSTIAKNLKACNLFRLINGRTAE 239 (557)
T ss_pred HHHhcChhhhhhHHHHHHHHHhcchhhhHHHHHHHHHHhCCCcHHHHHHHHHHHhhhhccchhH
Confidence 9999999988888899999999999999999999999999999888888887777663354433
No 163
>KOG1070 consensus rRNA processing protein Rrp5 [RNA processing and modification]
Probab=98.69 E-value=1.1e-05 Score=92.51 Aligned_cols=191 Identities=15% Similarity=0.126 Sum_probs=85.8
Q ss_pred HHHHHHHHHHHHHHHHHhhcc--CcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHH
Q 006120 99 HDYAVFVKELGVLRNRADGAR--SREEAFDGHMAIGRVLYEHQLFKEALVSFKRACELQPTDVRPHFRAGNCLYVLGRYR 176 (660)
Q Consensus 99 ~~~g~~~~Al~~l~~a~~~~~--~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~ 176 (660)
.+.++.++|.+..++++.... ..++....|..+-+....-|.-+.-.+.|++|.+... ...++..|..+|...++++
T Consensus 1469 LelsEiekAR~iaerAL~tIN~REeeEKLNiWiA~lNlEn~yG~eesl~kVFeRAcqycd-~~~V~~~L~~iy~k~ek~~ 1547 (1710)
T KOG1070|consen 1469 LELSEIEKARKIAERALKTINFREEEEKLNIWIAYLNLENAYGTEESLKKVFERACQYCD-AYTVHLKLLGIYEKSEKND 1547 (1710)
T ss_pred hhhhhhHHHHHHHHHHhhhCCcchhHHHHHHHHHHHhHHHhhCcHHHHHHHHHHHHHhcc-hHHHHHHHHHHHHHhhcch
Confidence 444444444444444444332 1122223333333333333333444444444444331 1234444444444444455
Q ss_pred HHHHHHHHHHHHhccCCCchhchHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCC--cHHHHHHHHHHHHHCCCHHHH
Q 006120 177 EAKEEYLLALEAAETGGNQWAYLLPQIYVNLGIALEGEGMVLSACEYYRESAILCPT--HFRALKLLGSALFGVGEYRAA 254 (660)
Q Consensus 177 ~A~~~~~~al~~~p~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~--~~~~~~~lg~~~~~~g~~~~A 254 (660)
+|.++++..++...+ ...+|..+|..++.+++-+.|...+.+|++.-|. +.......|.+.++.|+.+.+
T Consensus 1548 ~A~ell~~m~KKF~q--------~~~vW~~y~~fLl~~ne~~aa~~lL~rAL~~lPk~eHv~~IskfAqLEFk~GDaeRG 1619 (1710)
T KOG1070|consen 1548 EADELLRLMLKKFGQ--------TRKVWIMYADFLLRQNEAEAARELLKRALKSLPKQEHVEFISKFAQLEFKYGDAERG 1619 (1710)
T ss_pred hHHHHHHHHHHHhcc--------hhhHHHHHHHHHhcccHHHHHHHHHHHHHhhcchhhhHHHHHHHHHHHhhcCCchhh
Confidence 555555444444443 3444444444444444444444444444444444 344444444444444554444
Q ss_pred HHHHHHHHHhCCCCHHHHHHHHHHHHhCCChHHHHHHHHHHHHh
Q 006120 255 VKALEEAIFIKPDYADAHCDLASALHAMGEDERAIEVFQKAIDL 298 (660)
Q Consensus 255 ~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~ 298 (660)
..+|+..+.-+|...+.|..+...-.+.|+.+.+...|++++.+
T Consensus 1620 RtlfEgll~ayPKRtDlW~VYid~eik~~~~~~vR~lfeRvi~l 1663 (1710)
T KOG1070|consen 1620 RTLFEGLLSAYPKRTDLWSVYIDMEIKHGDIKYVRDLFERVIEL 1663 (1710)
T ss_pred HHHHHHHHhhCccchhHHHHHHHHHHccCCHHHHHHHHHHHHhc
Confidence 44444444444444444444444444444444444444444443
No 164
>PRK15331 chaperone protein SicA; Provisional
Probab=98.69 E-value=3.8e-07 Score=82.08 Aligned_cols=98 Identities=10% Similarity=-0.022 Sum_probs=75.5
Q ss_pred HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHH
Q 006120 200 LPQIYVNLGIALEGEGMVLSACEYYRESAILCPTHFRALKLLGSALFGVGEYRAAVKALEEAIFIKPDYADAHCDLASAL 279 (660)
Q Consensus 200 ~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~ 279 (660)
.-...+..|.-+...|++++|...|+-....+|.+++.+..||.++..+++|++|+..|..+..+.++++...+..|.|+
T Consensus 36 ~le~iY~~Ay~~y~~Gk~~eA~~~F~~L~~~d~~n~~Y~~GLaa~~Q~~k~y~~Ai~~Y~~A~~l~~~dp~p~f~agqC~ 115 (165)
T PRK15331 36 MMDGLYAHAYEFYNQGRLDEAETFFRFLCIYDFYNPDYTMGLAAVCQLKKQFQKACDLYAVAFTLLKNDYRPVFFTGQCQ 115 (165)
T ss_pred HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccCCCCccchHHHHH
Confidence 44556667777777777777777777777777777777777777777777777777777777777777777777777777
Q ss_pred HhCCChHHHHHHHHHHHH
Q 006120 280 HAMGEDERAIEVFQKAID 297 (660)
Q Consensus 280 ~~~g~~~~A~~~~~~al~ 297 (660)
+.+|+.+.|..+|+.++.
T Consensus 116 l~l~~~~~A~~~f~~a~~ 133 (165)
T PRK15331 116 LLMRKAAKARQCFELVNE 133 (165)
T ss_pred HHhCCHHHHHHHHHHHHh
Confidence 777777777777777776
No 165
>KOG1070 consensus rRNA processing protein Rrp5 [RNA processing and modification]
Probab=98.69 E-value=4.8e-06 Score=95.27 Aligned_cols=205 Identities=14% Similarity=0.058 Sum_probs=179.1
Q ss_pred CcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh-CCCC----HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhccCCC
Q 006120 120 SREEAFDGHMAIGRVLYEHQLFKEALVSFKRACEL-QPTD----VRPHFRAGNCLYVLGRYREAKEEYLLALEAAETGGN 194 (660)
Q Consensus 120 ~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~-~p~~----~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~ 194 (660)
.+|+....|...-..+.+.++.++|.+.+++||.. ++.. ..+|..+-++...-|.-+.-.+.|++|.+...
T Consensus 1453 ssPNSSi~WI~YMaf~LelsEiekAR~iaerAL~tIN~REeeEKLNiWiA~lNlEn~yG~eesl~kVFeRAcqycd---- 1528 (1710)
T KOG1070|consen 1453 SSPNSSILWIRYMAFHLELSEIEKARKIAERALKTINFREEEEKLNIWIAYLNLENAYGTEESLKKVFERACQYCD---- 1528 (1710)
T ss_pred cCCCcchHHHHHHHHHhhhhhhHHHHHHHHHHhhhCCcchhHHHHHHHHHHHhHHHhhCcHHHHHHHHHHHHHhcc----
Confidence 34444577888888889999999999999999974 4432 24555555555666777788889999988765
Q ss_pred chhchHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCC--CHHHH
Q 006120 195 QWAYLLPQIYVNLGIALEGEGMVLSACEYYRESAILCPTHFRALKLLGSALFGVGEYRAAVKALEEAIFIKPD--YADAH 272 (660)
Q Consensus 195 ~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~--~~~~~ 272 (660)
...+|..|..+|...+.+++|.++++..++...+....|..++..++++++-++|...+.+|+.--|. +....
T Consensus 1529 -----~~~V~~~L~~iy~k~ek~~~A~ell~~m~KKF~q~~~vW~~y~~fLl~~ne~~aa~~lL~rAL~~lPk~eHv~~I 1603 (1710)
T KOG1070|consen 1529 -----AYTVHLKLLGIYEKSEKNDEADELLRLMLKKFGQTRKVWIMYADFLLRQNEAEAARELLKRALKSLPKQEHVEFI 1603 (1710)
T ss_pred -----hHHHHHHHHHHHHHhhcchhHHHHHHHHHHHhcchhhHHHHHHHHHhcccHHHHHHHHHHHHHhhcchhhhHHHH
Confidence 45789999999999999999999999999998888999999999999999999999999999999997 68888
Q ss_pred HHHHHHHHhCCChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHccc
Q 006120 273 CDLASALHAMGEDERAIEVFQKAIDLKPGHVDALYNLGGLYMDLGAGETEEAKKALKEALKMT 335 (660)
Q Consensus 273 ~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~La~~~~~~~~g~~~eA~~~~~~al~l~ 335 (660)
...|.+-.+.|+.+.+...|+..+.-.|.-.+.|.-+...-... |+.+.+...|++++.+.
T Consensus 1604 skfAqLEFk~GDaeRGRtlfEgll~ayPKRtDlW~VYid~eik~--~~~~~vR~lfeRvi~l~ 1664 (1710)
T KOG1070|consen 1604 SKFAQLEFKYGDAERGRTLFEGLLSAYPKRTDLWSVYIDMEIKH--GDIKYVRDLFERVIELK 1664 (1710)
T ss_pred HHHHHHHhhcCCchhhHHHHHHHHhhCccchhHHHHHHHHHHcc--CCHHHHHHHHHHHHhcC
Confidence 89999999999999999999999999999999999999888877 99999999999999887
No 166
>PRK10803 tol-pal system protein YbgF; Provisional
Probab=98.68 E-value=7.6e-07 Score=88.83 Aligned_cols=106 Identities=13% Similarity=0.201 Sum_probs=63.5
Q ss_pred HHHHHHHHHH-HHcCCHHHHHHHHHHHHHhCCCC---HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhccCCCchhchHH
Q 006120 126 DGHMAIGRVL-YEHQLFKEALVSFKRACELQPTD---VRPHFRAGNCLYVLGRYREAKEEYLLALEAAETGGNQWAYLLP 201 (660)
Q Consensus 126 ~~~~~lg~~~-~~~g~~~~A~~~~~~al~~~p~~---~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~ 201 (660)
...+..|..+ +..|+|++|+..|+..++..|+. +.+++.+|.+|+..|++++|+..|+++++..|++.. .+
T Consensus 143 ~~~Y~~A~~l~~~~~~y~~Ai~af~~fl~~yP~s~~a~~A~y~LG~~y~~~g~~~~A~~~f~~vv~~yP~s~~-----~~ 217 (263)
T PRK10803 143 NTDYNAAIALVQDKSRQDDAIVAFQNFVKKYPDSTYQPNANYWLGQLNYNKGKKDDAAYYFASVVKNYPKSPK-----AA 217 (263)
T ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHHCcCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCcc-----hh
Confidence 3445555544 44566666666666666666655 356666666666666666666666666666655432 45
Q ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCcHH
Q 006120 202 QIYVNLGIALEGEGMVLSACEYYRESAILCPTHFR 236 (660)
Q Consensus 202 ~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~ 236 (660)
.+++.+|.++..+|++++|...|+++++..|+...
T Consensus 218 dAl~klg~~~~~~g~~~~A~~~~~~vi~~yP~s~~ 252 (263)
T PRK10803 218 DAMFKVGVIMQDKGDTAKAKAVYQQVIKKYPGTDG 252 (263)
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCCHH
Confidence 56666666666666666666666666666665543
No 167
>PRK15331 chaperone protein SicA; Provisional
Probab=98.67 E-value=3.4e-07 Score=82.44 Aligned_cols=111 Identities=12% Similarity=0.110 Sum_probs=100.5
Q ss_pred hCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhCCChHHHHHHHHHHHHhCCCCHHHHHHH
Q 006120 230 LCPTHFRALKLLGSALFGVGEYRAAVKALEEAIFIKPDYADAHCDLASALHAMGEDERAIEVFQKAIDLKPGHVDALYNL 309 (660)
Q Consensus 230 ~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~L 309 (660)
+.++.-+..+..|.-++..|++++|...|+-....+|.++..|..||.++..+++|++|+..|..+..++++++...+..
T Consensus 32 is~~~le~iY~~Ay~~y~~Gk~~eA~~~F~~L~~~d~~n~~Y~~GLaa~~Q~~k~y~~Ai~~Y~~A~~l~~~dp~p~f~a 111 (165)
T PRK15331 32 IPQDMMDGLYAHAYEFYNQGRLDEAETFFRFLCIYDFYNPDYTMGLAAVCQLKKQFQKACDLYAVAFTLLKNDYRPVFFT 111 (165)
T ss_pred CCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccCCCCccchH
Confidence 44555677888999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHhcCCCHHHHHHHHHHHHcccCChhHHH
Q 006120 310 GGLYMDLGAGETEEAKKALKEALKMTNRVELHD 342 (660)
Q Consensus 310 a~~~~~~~~g~~~eA~~~~~~al~l~p~~~~~~ 342 (660)
|.++..+ |+.++|+..|+.++.......+..
T Consensus 112 gqC~l~l--~~~~~A~~~f~~a~~~~~~~~l~~ 142 (165)
T PRK15331 112 GQCQLLM--RKAAKARQCFELVNERTEDESLRA 142 (165)
T ss_pred HHHHHHh--CCHHHHHHHHHHHHhCcchHHHHH
Confidence 9999999 999999999999999544344433
No 168
>PF12688 TPR_5: Tetratrico peptide repeat
Probab=98.66 E-value=4.8e-07 Score=78.42 Aligned_cols=99 Identities=25% Similarity=0.249 Sum_probs=60.9
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHhccCCCchhchHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCC---cHH
Q 006120 160 RPHFRAGNCLYVLGRYREAKEEYLLALEAAETGGNQWAYLLPQIYVNLGIALEGEGMVLSACEYYRESAILCPT---HFR 236 (660)
Q Consensus 160 ~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~---~~~ 236 (660)
.+++.+|.++-..|+.++|+..|++++........ ...+++.+|..+..+|++++|+..+++++...|+ +..
T Consensus 2 ~~~~~~A~a~d~~G~~~~Ai~~Y~~Al~~gL~~~~-----~~~a~i~lastlr~LG~~deA~~~L~~~~~~~p~~~~~~~ 76 (120)
T PF12688_consen 2 RALYELAWAHDSLGREEEAIPLYRRALAAGLSGAD-----RRRALIQLASTLRNLGRYDEALALLEEALEEFPDDELNAA 76 (120)
T ss_pred chHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCchH-----HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCccccHH
Confidence 34566666666666666666666666665333211 3456666666666666666666666666666565 555
Q ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHH
Q 006120 237 ALKLLGSALFGVGEYRAAVKALEEAIF 263 (660)
Q Consensus 237 ~~~~lg~~~~~~g~~~~A~~~~~~al~ 263 (660)
+...++.++...|++++|+..+-.++.
T Consensus 77 l~~f~Al~L~~~gr~~eAl~~~l~~la 103 (120)
T PF12688_consen 77 LRVFLALALYNLGRPKEALEWLLEALA 103 (120)
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 555666666666666666666655553
No 169
>PRK10803 tol-pal system protein YbgF; Provisional
Probab=98.64 E-value=1.1e-06 Score=87.61 Aligned_cols=103 Identities=21% Similarity=0.223 Sum_probs=76.6
Q ss_pred HHHHHHHHHH-HHCCCHHHHHHHHHHHHHhCCCc---HHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCC---HHHHHH
Q 006120 202 QIYVNLGIAL-EGEGMVLSACEYYRESAILCPTH---FRALKLLGSALFGVGEYRAAVKALEEAIFIKPDY---ADAHCD 274 (660)
Q Consensus 202 ~~~~~la~~~-~~~g~~~~A~~~~~~al~~~p~~---~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~---~~~~~~ 274 (660)
...+..+..+ ...|+|++|+..|++.++..|+. +.+++.+|.+|+..|++++|+..|++++...|++ +.+++.
T Consensus 143 ~~~Y~~A~~l~~~~~~y~~Ai~af~~fl~~yP~s~~a~~A~y~LG~~y~~~g~~~~A~~~f~~vv~~yP~s~~~~dAl~k 222 (263)
T PRK10803 143 NTDYNAAIALVQDKSRQDDAIVAFQNFVKKYPDSTYQPNANYWLGQLNYNKGKKDDAAYYFASVVKNYPKSPKAADAMFK 222 (263)
T ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHHCcCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCcchhHHHHH
Confidence 4455555554 45678888888888888887776 4677788888888888888888888888776664 667777
Q ss_pred HHHHHHhCCChHHHHHHHHHHHHhCCCCHH
Q 006120 275 LASALHAMGEDERAIEVFQKAIDLKPGHVD 304 (660)
Q Consensus 275 la~~~~~~g~~~~A~~~~~~al~~~p~~~~ 304 (660)
+|.++..+|++++|...|+++++..|+...
T Consensus 223 lg~~~~~~g~~~~A~~~~~~vi~~yP~s~~ 252 (263)
T PRK10803 223 VGVIMQDKGDTAKAKAVYQQVIKKYPGTDG 252 (263)
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHHCcCCHH
Confidence 788887788888888888888777777654
No 170
>COG4700 Uncharacterized protein conserved in bacteria containing a divergent form of TPR repeats [Function unknown]
Probab=98.63 E-value=5.1e-06 Score=75.25 Aligned_cols=157 Identities=24% Similarity=0.214 Sum_probs=132.2
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHHHhccCCCchhchHHHHHHHHHHHHHHCCCHHHHHHHHHHHHH-hCCCcHHHHHHHHH
Q 006120 165 AGNCLYVLGRYREAKEEYLLALEAAETGGNQWAYLLPQIYVNLGIALEGEGMVLSACEYYRESAI-LCPTHFRALKLLGS 243 (660)
Q Consensus 165 la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~-~~p~~~~~~~~lg~ 243 (660)
++....+.=+++....-..+.++..|. ..-.+.||..+...|++.+|..+|++++. +...++..+..+++
T Consensus 62 ~~~a~~q~ldP~R~~Rea~~~~~~ApT---------vqnr~rLa~al~elGr~~EA~~hy~qalsG~fA~d~a~lLglA~ 132 (251)
T COG4700 62 LLMALQQKLDPERHLREATEELAIAPT---------VQNRYRLANALAELGRYHEAVPHYQQALSGIFAHDAAMLLGLAQ 132 (251)
T ss_pred HHHHHHHhcChhHHHHHHHHHHhhchh---------HHHHHHHHHHHHHhhhhhhhHHHHHHHhccccCCCHHHHHHHHH
Confidence 344455556677777777777777775 45678899999999999999999999986 46778899999999
Q ss_pred HHHHCCCHHHHHHHHHHHHHhCCCC--HHHHHHHHHHHHhCCChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCCCH
Q 006120 244 ALFGVGEYRAAVKALEEAIFIKPDY--ADAHCDLASALHAMGEDERAIEVFQKAIDLKPGHVDALYNLGGLYMDLGAGET 321 (660)
Q Consensus 244 ~~~~~g~~~~A~~~~~~al~~~p~~--~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~La~~~~~~~~g~~ 321 (660)
..+..+++..|...+++..+.+|.. +.....+|.+|..+|++.+|...|+.++...|+ +.+....+..+..+ |+.
T Consensus 133 Aqfa~~~~A~a~~tLe~l~e~~pa~r~pd~~Ll~aR~laa~g~~a~Aesafe~a~~~ypg-~~ar~~Y~e~La~q--gr~ 209 (251)
T COG4700 133 AQFAIQEFAAAQQTLEDLMEYNPAFRSPDGHLLFARTLAAQGKYADAESAFEVAISYYPG-PQARIYYAEMLAKQ--GRL 209 (251)
T ss_pred HHHhhccHHHHHHHHHHHhhcCCccCCCCchHHHHHHHHhcCCchhHHHHHHHHHHhCCC-HHHHHHHHHHHHHh--cch
Confidence 9999999999999999999998753 778889999999999999999999999999997 67777788888888 888
Q ss_pred HHHHHHHHHHHc
Q 006120 322 EEAKKALKEALK 333 (660)
Q Consensus 322 ~eA~~~~~~al~ 333 (660)
++|..-+....+
T Consensus 210 ~ea~aq~~~v~d 221 (251)
T COG4700 210 REANAQYVAVVD 221 (251)
T ss_pred hHHHHHHHHHHH
Confidence 888877665554
No 171
>PF09295 ChAPs: ChAPs (Chs5p-Arf1p-binding proteins); InterPro: IPR015374 ChAPs (Chs5p-Arf1p-binding proteins) are required for the export of specialised cargo from the Golgi. They physically interact with Chs3, Chs5 and the small GTPase Arf1, and they also form interactions with each other [].
Probab=98.63 E-value=9.4e-07 Score=92.64 Aligned_cols=115 Identities=26% Similarity=0.271 Sum_probs=73.2
Q ss_pred HHHHCCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhCCChHHHH
Q 006120 210 ALEGEGMVLSACEYYRESAILCPTHFRALKLLGSALFGVGEYRAAVKALEEAIFIKPDYADAHCDLASALHAMGEDERAI 289 (660)
Q Consensus 210 ~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~ 289 (660)
++...++++.|+..+++..+.+|+ +...++.++...++-.+|++.+++++...|.+...+...+..+...++++.|+
T Consensus 178 ~l~~t~~~~~ai~lle~L~~~~pe---v~~~LA~v~l~~~~E~~AI~ll~~aL~~~p~d~~LL~~Qa~fLl~k~~~~lAL 254 (395)
T PF09295_consen 178 YLSLTQRYDEAIELLEKLRERDPE---VAVLLARVYLLMNEEVEAIRLLNEALKENPQDSELLNLQAEFLLSKKKYELAL 254 (395)
T ss_pred HHhhcccHHHHHHHHHHHHhcCCc---HHHHHHHHHHhcCcHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCCHHHHH
Confidence 334455666666666666555543 34445666666666666666666666666666666666666666666666666
Q ss_pred HHHHHHHHhCCCCHHHHHHHHHHHHHhcCCCHHHHHHHHH
Q 006120 290 EVFQKAIDLKPGHVDALYNLGGLYMDLGAGETEEAKKALK 329 (660)
Q Consensus 290 ~~~~~al~~~p~~~~a~~~La~~~~~~~~g~~~eA~~~~~ 329 (660)
...++++.+.|+....|+.|+.+|..+ |++++|+..+.
T Consensus 255 ~iAk~av~lsP~~f~~W~~La~~Yi~~--~d~e~ALlaLN 292 (395)
T PF09295_consen 255 EIAKKAVELSPSEFETWYQLAECYIQL--GDFENALLALN 292 (395)
T ss_pred HHHHHHHHhCchhHHHHHHHHHHHHhc--CCHHHHHHHHh
Confidence 666666666666666666666666666 66666665555
No 172
>PF09295 ChAPs: ChAPs (Chs5p-Arf1p-binding proteins); InterPro: IPR015374 ChAPs (Chs5p-Arf1p-binding proteins) are required for the export of specialised cargo from the Golgi. They physically interact with Chs3, Chs5 and the small GTPase Arf1, and they also form interactions with each other [].
Probab=98.62 E-value=1.1e-06 Score=92.12 Aligned_cols=111 Identities=20% Similarity=0.199 Sum_probs=97.1
Q ss_pred HHHHHHHHhccCCCchhchHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHCCCHHHHHHHHHH
Q 006120 181 EYLLALEAAETGGNQWAYLLPQIYVNLGIALEGEGMVLSACEYYRESAILCPTHFRALKLLGSALFGVGEYRAAVKALEE 260 (660)
Q Consensus 181 ~~~~al~~~p~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~ 260 (660)
.++.++++....... .+.+...++.++...++-.+|+..+.+++...|.+...+...+..+...++++.|+...++
T Consensus 184 ~~~~ai~lle~L~~~----~pev~~~LA~v~l~~~~E~~AI~ll~~aL~~~p~d~~LL~~Qa~fLl~k~~~~lAL~iAk~ 259 (395)
T PF09295_consen 184 RYDEAIELLEKLRER----DPEVAVLLARVYLLMNEEVEAIRLLNEALKENPQDSELLNLQAEFLLSKKKYELALEIAKK 259 (395)
T ss_pred cHHHHHHHHHHHHhc----CCcHHHHHHHHHHhcCcHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCCHHHHHHHHHH
Confidence 355566554432221 4567788999999999999999999999999999999999999999999999999999999
Q ss_pred HHHhCCCCHHHHHHHHHHHHhCCChHHHHHHHHHH
Q 006120 261 AIFIKPDYADAHCDLASALHAMGEDERAIEVFQKA 295 (660)
Q Consensus 261 al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~a 295 (660)
++.+.|++...|..|+.+|..+|++++|+..++.+
T Consensus 260 av~lsP~~f~~W~~La~~Yi~~~d~e~ALlaLNs~ 294 (395)
T PF09295_consen 260 AVELSPSEFETWYQLAECYIQLGDFENALLALNSC 294 (395)
T ss_pred HHHhCchhHHHHHHHHHHHHhcCCHHHHHHHHhcC
Confidence 99999999999999999999999999999877754
No 173
>COG3898 Uncharacterized membrane-bound protein [Function unknown]
Probab=98.57 E-value=9.4e-05 Score=74.54 Aligned_cols=244 Identities=17% Similarity=0.096 Sum_probs=181.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhccCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCC
Q 006120 95 EESTHDYAVFVKELGVLRNRADGARSREEAFDGHMAIGRVLYEHQLFKEALVSFKRACELQPTDVRPHFRAGNCLYVLGR 174 (660)
Q Consensus 95 ~~~~~~~g~~~~Al~~l~~a~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~ 174 (660)
++...--|+++.|.+.|+..+. +++...-.+..+-......|..+.|+.+-+++....|..+.++...-......|+
T Consensus 127 AQaal~eG~~~~Ar~kfeAMl~---dPEtRllGLRgLyleAqr~GareaAr~yAe~Aa~~Ap~l~WA~~AtLe~r~~~gd 203 (531)
T COG3898 127 AQAALLEGDYEDARKKFEAMLD---DPETRLLGLRGLYLEAQRLGAREAARHYAERAAEKAPQLPWAARATLEARCAAGD 203 (531)
T ss_pred HHHHHhcCchHHHHHHHHHHhc---ChHHHHHhHHHHHHHHHhcccHHHHHHHHHHHHhhccCCchHHHHHHHHHHhcCC
Confidence 4455667889999998887764 3332223333344445678999999999999999999999998888888999999
Q ss_pred HHHHHHHHHHHHHHhccCCCchhchHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHCCCHHHH
Q 006120 175 YREAKEEYLLALEAAETGGNQWAYLLPQIYVNLGIALEGEGMVLSACEYYRESAILCPTHFRALKLLGSALFGVGEYRAA 254 (660)
Q Consensus 175 ~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A 254 (660)
|+.|+++.+......--..+.-....+..+...+.... .-+...|...-.+++++.|+...+-..-+..+++.|+..++
T Consensus 204 Wd~AlkLvd~~~~~~vie~~~aeR~rAvLLtAkA~s~l-dadp~~Ar~~A~~a~KL~pdlvPaav~AAralf~d~~~rKg 282 (531)
T COG3898 204 WDGALKLVDAQRAAKVIEKDVAERSRAVLLTAKAMSLL-DADPASARDDALEANKLAPDLVPAAVVAARALFRDGNLRKG 282 (531)
T ss_pred hHHHHHHHHHHHHHHhhchhhHHHHHHHHHHHHHHHHh-cCChHHHHHHHHHHhhcCCccchHHHHHHHHHHhccchhhh
Confidence 99999999887665332222211112222222232222 34688999999999999999999999999999999999999
Q ss_pred HHHHHHHHHhCCCCHHHHHHHHHHHHhCCChHHHHHHHHHH---HHhCCCCHHHHHHHHHHHHHhcCCCHHHHHHHHHHH
Q 006120 255 VKALEEAIFIKPDYADAHCDLASALHAMGEDERAIEVFQKA---IDLKPGHVDALYNLGGLYMDLGAGETEEAKKALKEA 331 (660)
Q Consensus 255 ~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~a---l~~~p~~~~a~~~La~~~~~~~~g~~~eA~~~~~~a 331 (660)
-.+++.+.+..|. +.+ +.+|....--+.++.-++++ ..+.|++.+.....+..-... |++..|..--+.+
T Consensus 283 ~~ilE~aWK~ePH-P~i----a~lY~~ar~gdta~dRlkRa~~L~slk~nnaes~~~va~aAlda--~e~~~ARa~Aeaa 355 (531)
T COG3898 283 SKILETAWKAEPH-PDI----ALLYVRARSGDTALDRLKRAKKLESLKPNNAESSLAVAEAALDA--GEFSAARAKAEAA 355 (531)
T ss_pred hhHHHHHHhcCCC-hHH----HHHHHHhcCCCcHHHHHHHHHHHHhcCccchHHHHHHHHHHHhc--cchHHHHHHHHHH
Confidence 9999999999885 433 34454444444455555544 456899999999999999988 9999999999999
Q ss_pred HcccCChhHHHHHHHHHH
Q 006120 332 LKMTNRVELHDAVSHLKQ 349 (660)
Q Consensus 332 l~l~p~~~~~~~~~~l~~ 349 (660)
..+.|.......+..++.
T Consensus 356 ~r~~pres~~lLlAdIee 373 (531)
T COG3898 356 AREAPRESAYLLLADIEE 373 (531)
T ss_pred hhhCchhhHHHHHHHHHh
Confidence 999998776655555543
No 174
>KOG2047 consensus mRNA splicing factor [RNA processing and modification]
Probab=98.55 E-value=3.4e-05 Score=82.21 Aligned_cols=294 Identities=10% Similarity=0.073 Sum_probs=202.6
Q ss_pred hccCchHHHHhccCchhhHHHHHHHHHHHHhhccCCcCCchHHhhh---HHHHHHhCCchHHHHhHHHHHHHHHHHHHHH
Q 006120 29 VSPNHGIVFDDTWKIVDDLEILVKRLKAKQAKDGKLKGDNSDAFSD---AGWSRELGTSAEISEKRVFWEESTHDYAVFV 105 (660)
Q Consensus 29 ~~~~lg~~y~~~~~~~~al~~~~~~~~~a~~~~~~l~~~~~~a~~~---~~~~~~l~~~~~~~~~~~~l~~~~~~~g~~~ 105 (660)
.|..|+--|...|.++.+-+.+++++...+.-+ -.....++|.. ......++...+.. .-....-+.+
T Consensus 250 Lw~SLAdYYIr~g~~ekarDvyeeai~~v~tvr--DFt~ifd~Ya~FEE~~~~~~me~a~~~~-------~n~ed~~dl~ 320 (835)
T KOG2047|consen 250 LWCSLADYYIRSGLFEKARDVYEEAIQTVMTVR--DFTQIFDAYAQFEESCVAAKMELADEES-------GNEEDDVDLE 320 (835)
T ss_pred HHHHHHHHHHHhhhhHHHHHHHHHHHHhheehh--hHHHHHHHHHHHHHHHHHHHHhhhhhcc-------cChhhhhhHH
Confidence 456788889999999999999999888533211 00111111110 00001111000000 0000111222
Q ss_pred HHHHHHHHHHhhcc---------CcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh-CCC-----CHHHHHHHHHHHH
Q 006120 106 KELGVLRNRADGAR---------SREEAFDGHMAIGRVLYEHQLFKEALVSFKRACEL-QPT-----DVRPHFRAGNCLY 170 (660)
Q Consensus 106 ~Al~~l~~a~~~~~---------~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~-~p~-----~~~~~~~la~~~~ 170 (660)
-.+..++..+...+ +++.....|.. ++-+..|+..+-+..|.+|+.. +|. -...|..+|..|.
T Consensus 321 ~~~a~~e~lm~rr~~~lNsVlLRQn~~nV~eW~k--RV~l~e~~~~~~i~tyteAv~~vdP~ka~Gs~~~Lw~~faklYe 398 (835)
T KOG2047|consen 321 LHMARFESLMNRRPLLLNSVLLRQNPHNVEEWHK--RVKLYEGNAAEQINTYTEAVKTVDPKKAVGSPGTLWVEFAKLYE 398 (835)
T ss_pred HHHHHHHHHHhccchHHHHHHHhcCCccHHHHHh--hhhhhcCChHHHHHHHHHHHHccCcccCCCChhhHHHHHHHHHH
Confidence 22333333333222 33333444544 4555678899999999999874 454 2468999999999
Q ss_pred HcCCHHHHHHHHHHHHHHhccCCCchhchHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCC-----------------
Q 006120 171 VLGRYREAKEEYLLALEAAETGGNQWAYLLPQIYVNLGIALEGEGMVLSACEYYRESAILCPT----------------- 233 (660)
Q Consensus 171 ~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~----------------- 233 (660)
..|+.+.|...++++++..-...+. .+.+|..-|..-....+++.|+.+.++|...-..
T Consensus 399 ~~~~l~~aRvifeka~~V~y~~v~d----La~vw~~waemElrh~~~~~Al~lm~~A~~vP~~~~~~~yd~~~pvQ~rlh 474 (835)
T KOG2047|consen 399 NNGDLDDARVIFEKATKVPYKTVED----LAEVWCAWAEMELRHENFEAALKLMRRATHVPTNPELEYYDNSEPVQARLH 474 (835)
T ss_pred hcCcHHHHHHHHHHhhcCCccchHH----HHHHHHHHHHHHHhhhhHHHHHHHHHhhhcCCCchhhhhhcCCCcHHHHHH
Confidence 9999999999999999875433222 6899999999999999999999999999765211
Q ss_pred -cHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhCCChHHHHHHHHHHHHhC--CCCHHHHHHHH
Q 006120 234 -HFRALKLLGSALFGVGEYRAAVKALEEAIFIKPDYADAHCDLASALHAMGEDERAIEVFQKAIDLK--PGHVDALYNLG 310 (660)
Q Consensus 234 -~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~--p~~~~a~~~La 310 (660)
...+|..++......|-++.....|++.+++.--.+.+-.|.|..+....-+++|.+.|++.+.+. |.-.+.|...-
T Consensus 475 rSlkiWs~y~DleEs~gtfestk~vYdriidLriaTPqii~NyAmfLEeh~yfeesFk~YErgI~LFk~p~v~diW~tYL 554 (835)
T KOG2047|consen 475 RSLKIWSMYADLEESLGTFESTKAVYDRIIDLRIATPQIIINYAMFLEEHKYFEESFKAYERGISLFKWPNVYDIWNTYL 554 (835)
T ss_pred HhHHHHHHHHHHHHHhccHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhHHHHHHHHHHHcCCccCCCccHHHHHHHHH
Confidence 134788889999999999999999999999998899999999999999999999999999999986 45556665433
Q ss_pred HHHH-HhcCCCHHHHHHHHHHHHcccCC
Q 006120 311 GLYM-DLGAGETEEAKKALKEALKMTNR 337 (660)
Q Consensus 311 ~~~~-~~~~g~~~eA~~~~~~al~l~p~ 337 (660)
.... ..|.-..+.|...|++||+..|.
T Consensus 555 tkfi~rygg~klEraRdLFEqaL~~Cpp 582 (835)
T KOG2047|consen 555 TKFIKRYGGTKLERARDLFEQALDGCPP 582 (835)
T ss_pred HHHHHHhcCCCHHHHHHHHHHHHhcCCH
Confidence 3222 22325899999999999999884
No 175
>COG4785 NlpI Lipoprotein NlpI, contains TPR repeats [General function prediction only]
Probab=98.55 E-value=1.1e-05 Score=74.94 Aligned_cols=215 Identities=17% Similarity=0.127 Sum_probs=152.0
Q ss_pred hHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHhhccCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHH
Q 006120 85 AEISEKRVFWEESTHDYAVFVKELGVLRNRADGARSREEAFDGHMAIGRVLYEHQLFKEALVSFKRACELQPTDVRPHFR 164 (660)
Q Consensus 85 ~~~~~~~~~l~~~~~~~g~~~~Al~~l~~a~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~ 164 (660)
.+........|..+...|-..-|.-.+.+++...|..+ .+++.+|..+...|+++.|.+.|...++++|....+..+
T Consensus 62 eeRA~l~fERGvlYDSlGL~~LAR~DftQaLai~P~m~---~vfNyLG~Yl~~a~~fdaa~eaFds~~ELDp~y~Ya~lN 138 (297)
T COG4785 62 EERAQLLFERGVLYDSLGLRALARNDFSQALAIRPDMP---EVFNYLGIYLTQAGNFDAAYEAFDSVLELDPTYNYAHLN 138 (297)
T ss_pred HHHHHHHHHhcchhhhhhHHHHHhhhhhhhhhcCCCcH---HHHHHHHHHHHhcccchHHHHHhhhHhccCCcchHHHhc
Confidence 34455566668888889999889999999998888776 788999999999999999999999999999999999999
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHHHhccCCCchhchHHHHHHHHHHHHHHCCCHHHHHHHHH-HHHHhCCCcHHHHHHHHH
Q 006120 165 AGNCLYVLGRYREAKEEYLLALEAAETGGNQWAYLLPQIYVNLGIALEGEGMVLSACEYYR-ESAILCPTHFRALKLLGS 243 (660)
Q Consensus 165 la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~-~al~~~p~~~~~~~~lg~ 243 (660)
.|..++--|++.-|.+.+.+-.+.+|+.+ ....|..+- ...-++.+|..-+. ++...+. ....|+..+
T Consensus 139 Rgi~~YY~gR~~LAq~d~~~fYQ~D~~DP------fR~LWLYl~---E~k~dP~~A~tnL~qR~~~~d~-e~WG~~iV~- 207 (297)
T COG4785 139 RGIALYYGGRYKLAQDDLLAFYQDDPNDP------FRSLWLYLN---EQKLDPKQAKTNLKQRAEKSDK-EQWGWNIVE- 207 (297)
T ss_pred cceeeeecCchHhhHHHHHHHHhcCCCCh------HHHHHHHHH---HhhCCHHHHHHHHHHHHHhccH-hhhhHHHHH-
Confidence 99999999999999999999999888753 223333222 23446677765544 3433332 222222222
Q ss_pred HHHHCCCHHHHHHHHHHHHHhCCCC-------HHHHHHHHHHHHhCCChHHHHHHHHHHHHhCCCC----HHHHHHHHHH
Q 006120 244 ALFGVGEYRAAVKALEEAIFIKPDY-------ADAHCDLASALHAMGEDERAIEVFQKAIDLKPGH----VDALYNLGGL 312 (660)
Q Consensus 244 ~~~~~g~~~~A~~~~~~al~~~p~~-------~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~----~~a~~~La~~ 312 (660)
+..|+..+ ...++++..-..++ .++++.+|..+...|+.++|...|+-++..+--+ --+...|+.+
T Consensus 208 --~yLgkiS~-e~l~~~~~a~a~~n~~~Ae~LTEtyFYL~K~~l~~G~~~~A~~LfKLaiannVynfVE~RyA~~EL~~l 284 (297)
T COG4785 208 --FYLGKISE-ETLMERLKADATDNTSLAEHLTETYFYLGKYYLSLGDLDEATALFKLAVANNVYNFVEHRYALLELSLL 284 (297)
T ss_pred --HHHhhccH-HHHHHHHHhhccchHHHHHHHHHHHHHHHHHHhccccHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHh
Confidence 12233221 22334444433333 5678999999999999999999999998865432 2345555555
Q ss_pred HHHh
Q 006120 313 YMDL 316 (660)
Q Consensus 313 ~~~~ 316 (660)
....
T Consensus 285 ~q~~ 288 (297)
T COG4785 285 GQDQ 288 (297)
T ss_pred cccc
Confidence 5443
No 176
>COG4105 ComL DNA uptake lipoprotein [General function prediction only]
Probab=98.54 E-value=3.8e-05 Score=74.13 Aligned_cols=105 Identities=15% Similarity=0.082 Sum_probs=86.3
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC---HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhccCCCchhchHH
Q 006120 125 FDGHMAIGRVLYEHQLFKEALVSFKRACELQPTD---VRPHFRAGNCLYVLGRYREAKEEYLLALEAAETGGNQWAYLLP 201 (660)
Q Consensus 125 ~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~---~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~ 201 (660)
+..|+..|...+..|++++|+..|+.+....|.. ..+...++.++++.+++++|+...++-+.+.|.+++ ..
T Consensus 34 ~~~LY~~g~~~L~~gn~~~A~~~fe~l~~~~p~s~~~~qa~l~l~yA~Yk~~~y~~A~~~~drFi~lyP~~~n-----~d 108 (254)
T COG4105 34 ASELYNEGLTELQKGNYEEAIKYFEALDSRHPFSPYSEQAQLDLAYAYYKNGEYDLALAYIDRFIRLYPTHPN-----AD 108 (254)
T ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCcccHHHHHHHHHHHHhcccHHHHHHHHHHHHHhCCCCCC-----hh
Confidence 5779999999999999999999999999988765 578899999999999999999999999999999876 56
Q ss_pred HHHHHHHHHHHHCC--------CHHHHHHHHHHHHHhCCCc
Q 006120 202 QIYVNLGIALEGEG--------MVLSACEYYRESAILCPTH 234 (660)
Q Consensus 202 ~~~~~la~~~~~~g--------~~~~A~~~~~~al~~~p~~ 234 (660)
.+++..|.++...= -..+|...++..+...|+.
T Consensus 109 Y~~YlkgLs~~~~i~~~~rDq~~~~~A~~~f~~~i~ryPnS 149 (254)
T COG4105 109 YAYYLKGLSYFFQIDDVTRDQSAARAAFAAFKELVQRYPNS 149 (254)
T ss_pred HHHHHHHHHHhccCCccccCHHHHHHHHHHHHHHHHHCCCC
Confidence 67777777654321 2345666667777777765
No 177
>KOG3081 consensus Vesicle coat complex COPI, epsilon subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.53 E-value=9.9e-05 Score=71.01 Aligned_cols=164 Identities=17% Similarity=0.052 Sum_probs=128.7
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHhccCCCchhchHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCcHHHHH
Q 006120 160 RPHFRAGNCLYVLGRYREAKEEYLLALEAAETGGNQWAYLLPQIYVNLGIALEGEGMVLSACEYYRESAILCPTHFRALK 239 (660)
Q Consensus 160 ~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~ 239 (660)
.....-|.++...|++++|+....+... .++...-..++.++.+.+-|...+++..+++.+ ..+.
T Consensus 109 i~~l~aa~i~~~~~~~deAl~~~~~~~~-------------lE~~Al~VqI~lk~~r~d~A~~~lk~mq~ided--~tLt 173 (299)
T KOG3081|consen 109 IDLLLAAIIYMHDGDFDEALKALHLGEN-------------LEAAALNVQILLKMHRFDLAEKELKKMQQIDED--ATLT 173 (299)
T ss_pred HHHHHhhHHhhcCCChHHHHHHHhccch-------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHccchH--HHHH
Confidence 3444557788999999999998877433 334444456788889999999999998877544 3444
Q ss_pred HHHHHHHH----CCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhCCChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH
Q 006120 240 LLGSALFG----VGEYRAAVKALEEAIFIKPDYADAHCDLASALHAMGEDERAIEVFQKAIDLKPGHVDALYNLGGLYMD 315 (660)
Q Consensus 240 ~lg~~~~~----~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~La~~~~~ 315 (660)
.||..+.. .+++.+|.-+|++.-+..|..+.....++.+.+.+|++++|...++.++..++++++++.++..+-..
T Consensus 174 QLA~awv~la~ggek~qdAfyifeE~s~k~~~T~~llnG~Av~~l~~~~~eeAe~lL~eaL~kd~~dpetL~Nliv~a~~ 253 (299)
T KOG3081|consen 174 QLAQAWVKLATGGEKIQDAFYIFEELSEKTPPTPLLLNGQAVCHLQLGRYEEAESLLEEALDKDAKDPETLANLIVLALH 253 (299)
T ss_pred HHHHHHHHHhccchhhhhHHHHHHHHhcccCCChHHHccHHHHHHHhcCHHHHHHHHHHHHhccCCCHHHHHHHHHHHHH
Confidence 45544443 35688999999999998888899999999999999999999999999999999999999999999988
Q ss_pred hcCCCHHHH-HHHHHHHHcccCChhH
Q 006120 316 LGAGETEEA-KKALKEALKMTNRVEL 340 (660)
Q Consensus 316 ~~~g~~~eA-~~~~~~al~l~p~~~~ 340 (660)
. |...++ .+++.+.....|+..+
T Consensus 254 ~--Gkd~~~~~r~l~QLk~~~p~h~~ 277 (299)
T KOG3081|consen 254 L--GKDAEVTERNLSQLKLSHPEHPF 277 (299)
T ss_pred h--CCChHHHHHHHHHHHhcCCcchH
Confidence 8 666555 4555666666777554
No 178
>PF12688 TPR_5: Tetratrico peptide repeat
Probab=98.52 E-value=2.5e-06 Score=73.97 Aligned_cols=96 Identities=31% Similarity=0.312 Sum_probs=75.9
Q ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCc---HHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCC---CHHHHHHH
Q 006120 202 QIYVNLGIALEGEGMVLSACEYYRESAILCPTH---FRALKLLGSALFGVGEYRAAVKALEEAIFIKPD---YADAHCDL 275 (660)
Q Consensus 202 ~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~---~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~---~~~~~~~l 275 (660)
.+++.+|.++-..|+.++|+.+|++++...... ..++..+|..+...|++++|+..+++++...|+ +..+...+
T Consensus 2 ~~~~~~A~a~d~~G~~~~Ai~~Y~~Al~~gL~~~~~~~a~i~lastlr~LG~~deA~~~L~~~~~~~p~~~~~~~l~~f~ 81 (120)
T PF12688_consen 2 RALYELAWAHDSLGREEEAIPLYRRALAAGLSGADRRRALIQLASTLRNLGRYDEALALLEEALEEFPDDELNAALRVFL 81 (120)
T ss_pred chHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCccccHHHHHHH
Confidence 456778888888888888888888888864433 557888888888888888888888888888777 66777778
Q ss_pred HHHHHhCCChHHHHHHHHHHHH
Q 006120 276 ASALHAMGEDERAIEVFQKAID 297 (660)
Q Consensus 276 a~~~~~~g~~~~A~~~~~~al~ 297 (660)
+.++...|++++|+..+-.++.
T Consensus 82 Al~L~~~gr~~eAl~~~l~~la 103 (120)
T PF12688_consen 82 ALALYNLGRPKEALEWLLEALA 103 (120)
T ss_pred HHHHHHCCCHHHHHHHHHHHHH
Confidence 8888888888888888777664
No 179
>COG4700 Uncharacterized protein conserved in bacteria containing a divergent form of TPR repeats [Function unknown]
Probab=98.49 E-value=1.2e-05 Score=72.83 Aligned_cols=143 Identities=24% Similarity=0.246 Sum_probs=71.9
Q ss_pred HHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH-hccCCCchhchHHHHHHHHHHHHHHCCCHHHH
Q 006120 142 KEALVSFKRACELQPTDVRPHFRAGNCLYVLGRYREAKEEYLLALEA-AETGGNQWAYLLPQIYVNLGIALEGEGMVLSA 220 (660)
Q Consensus 142 ~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~-~p~~~~~~~~~~~~~~~~la~~~~~~g~~~~A 220 (660)
+.+..-..+.++..|. ..-.+.+|+.+...|++.+|...|++++.= ... .+..+..+++.....+++..|
T Consensus 73 ~R~~Rea~~~~~~ApT-vqnr~rLa~al~elGr~~EA~~hy~qalsG~fA~--------d~a~lLglA~Aqfa~~~~A~a 143 (251)
T COG4700 73 ERHLREATEELAIAPT-VQNRYRLANALAELGRYHEAVPHYQQALSGIFAH--------DAAMLLGLAQAQFAIQEFAAA 143 (251)
T ss_pred hHHHHHHHHHHhhchh-HHHHHHHHHHHHHhhhhhhhHHHHHHHhccccCC--------CHHHHHHHHHHHHhhccHHHH
Confidence 3333333344444443 233445555555555555555555555431 111 344455555555555555555
Q ss_pred HHHHHHHHHhCCC--cHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhCCChHHHHHHHHH
Q 006120 221 CEYYRESAILCPT--HFRALKLLGSALFGVGEYRAAVKALEEAIFIKPDYADAHCDLASALHAMGEDERAIEVFQK 294 (660)
Q Consensus 221 ~~~~~~al~~~p~--~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~ 294 (660)
...+++..+.+|. .++....+|..+..+|++.+|...|+.++...|+ +.+....+..+.++|+.++|...+..
T Consensus 144 ~~tLe~l~e~~pa~r~pd~~Ll~aR~laa~g~~a~Aesafe~a~~~ypg-~~ar~~Y~e~La~qgr~~ea~aq~~~ 218 (251)
T COG4700 144 QQTLEDLMEYNPAFRSPDGHLLFARTLAAQGKYADAESAFEVAISYYPG-PQARIYYAEMLAKQGRLREANAQYVA 218 (251)
T ss_pred HHHHHHHhhcCCccCCCCchHHHHHHHHhcCCchhHHHHHHHHHHhCCC-HHHHHHHHHHHHHhcchhHHHHHHHH
Confidence 5555555555443 2444555555555555555555555555555553 44445555555555555555444433
No 180
>PF14559 TPR_19: Tetratricopeptide repeat; PDB: 2R5S_A 3QDN_B 3QOU_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 3FP3_A 3LCA_A ....
Probab=98.48 E-value=4.4e-07 Score=70.69 Aligned_cols=64 Identities=25% Similarity=0.374 Sum_probs=32.5
Q ss_pred HCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhCCChHHHHHHHHHHHHhCCCCHHHHHHHH
Q 006120 247 GVGEYRAAVKALEEAIFIKPDYADAHCDLASALHAMGEDERAIEVFQKAIDLKPGHVDALYNLG 310 (660)
Q Consensus 247 ~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~La 310 (660)
..|++++|+..|++++..+|++..++..+|.+|...|++++|...+++++..+|+++..+..++
T Consensus 3 ~~~~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~l~~~~~~~~~~~~~~~l~a 66 (68)
T PF14559_consen 3 KQGDYDEAIELLEKALQRNPDNPEARLLLAQCYLKQGQYDEAEELLERLLKQDPDNPEYQQLLA 66 (68)
T ss_dssp HTTHHHHHHHHHHHHHHHTTTSHHHHHHHHHHHHHTT-HHHHHHHHHCCHGGGTTHHHHHHHHH
T ss_pred hccCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCHHHHHHHHh
Confidence 3455555555555555555555555555555555555555555555555555555444444333
No 181
>KOG2047 consensus mRNA splicing factor [RNA processing and modification]
Probab=98.47 E-value=0.0002 Score=76.48 Aligned_cols=244 Identities=15% Similarity=0.137 Sum_probs=141.5
Q ss_pred chHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHhhccCc---------H------HHHHHHHHHHHHHHHcCCHHHHHHHH
Q 006120 84 SAEISEKRVFWEESTHDYAVFVKELGVLRNRADGARSR---------E------EAFDGHMAIGRVLYEHQLFKEALVSF 148 (660)
Q Consensus 84 ~~~~~~~~~~l~~~~~~~g~~~~Al~~l~~a~~~~~~~---------~------~~~~~~~~lg~~~~~~g~~~~A~~~~ 148 (660)
-.+....+..|++.-....+++.|+..++.+.-.-... + .....|...+......|-++.....|
T Consensus 421 v~dLa~vw~~waemElrh~~~~~Al~lm~~A~~vP~~~~~~~yd~~~pvQ~rlhrSlkiWs~y~DleEs~gtfestk~vY 500 (835)
T KOG2047|consen 421 VEDLAEVWCAWAEMELRHENFEAALKLMRRATHVPTNPELEYYDNSEPVQARLHRSLKIWSMYADLEESLGTFESTKAVY 500 (835)
T ss_pred hHHHHHHHHHHHHHHHhhhhHHHHHHHHHhhhcCCCchhhhhhcCCCcHHHHHHHhHHHHHHHHHHHHHhccHHHHHHHH
Confidence 34455667777777777777777777776665322111 1 12245566666666677777777777
Q ss_pred HHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhccCCCchhchHHHHHHHHHHHHHHCCCHHHHHHHHHHHH
Q 006120 149 KRACELQPTDVRPHFRAGNCLYVLGRYREAKEEYLLALEAAETGGNQWAYLLPQIYVNLGIALEGEGMVLSACEYYRESA 228 (660)
Q Consensus 149 ~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al 228 (660)
.+++++---.|....+.|..+....-+++|.+.|++.+.+.+-..... .-..|+.....-+..-..+.|..+|++|+
T Consensus 501 driidLriaTPqii~NyAmfLEeh~yfeesFk~YErgI~LFk~p~v~d---iW~tYLtkfi~rygg~klEraRdLFEqaL 577 (835)
T KOG2047|consen 501 DRIIDLRIATPQIIINYAMFLEEHKYFEESFKAYERGISLFKWPNVYD---IWNTYLTKFIKRYGGTKLERARDLFEQAL 577 (835)
T ss_pred HHHHHHhcCCHHHHHHHHHHHHhhHHHHHHHHHHHcCCccCCCccHHH---HHHHHHHHHHHHhcCCCHHHHHHHHHHHH
Confidence 777777666677777777777777777777777777777765432110 11222222333333446677777777777
Q ss_pred HhCCCc--HHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHH-----hCCChHHHHHHHHHHHHhCCC
Q 006120 229 ILCPTH--FRALKLLGSALFGVGEYRAAVKALEEAIFIKPDYADAHCDLASALH-----AMGEDERAIEVFQKAIDLKPG 301 (660)
Q Consensus 229 ~~~p~~--~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~-----~~g~~~~A~~~~~~al~~~p~ 301 (660)
+..|.. ...+...+..-.+-|--..|+..|++|...-+.. -.+.+-++|. ..| ...-...|++||+.-|+
T Consensus 578 ~~Cpp~~aKtiyLlYA~lEEe~GLar~amsiyerat~~v~~a--~~l~myni~I~kaae~yG-v~~TR~iYekaIe~Lp~ 654 (835)
T KOG2047|consen 578 DGCPPEHAKTIYLLYAKLEEEHGLARHAMSIYERATSAVKEA--QRLDMYNIYIKKAAEIYG-VPRTREIYEKAIESLPD 654 (835)
T ss_pred hcCCHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhcCCHH--HHHHHHHHHHHHHHHHhC-CcccHHHHHHHHHhCCh
Confidence 766632 2244445555556677777777777765543221 1111112221 111 22334567777777665
Q ss_pred CHH--HHHHHHHHHHHhcCCCHHHHHHHHHHHHccc
Q 006120 302 HVD--ALYNLGGLYMDLGAGETEEAKKALKEALKMT 335 (660)
Q Consensus 302 ~~~--a~~~La~~~~~~~~g~~~eA~~~~~~al~l~ 335 (660)
... .-...+..-..+ |..+.|...|.-+-++.
T Consensus 655 ~~~r~mclrFAdlEtkl--GEidRARaIya~~sq~~ 688 (835)
T KOG2047|consen 655 SKAREMCLRFADLETKL--GEIDRARAIYAHGSQIC 688 (835)
T ss_pred HHHHHHHHHHHHHhhhh--hhHHHHHHHHHhhhhcC
Confidence 432 333445555555 78888888877777664
No 182
>KOG4234 consensus TPR repeat-containing protein [General function prediction only]
Probab=98.46 E-value=3.1e-06 Score=77.46 Aligned_cols=100 Identities=31% Similarity=0.314 Sum_probs=84.1
Q ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCC-----HHHHHHHHHHHHhCCChHHHHHHHHHHHHhCCCCHHHHHHHHH
Q 006120 237 ALKLLGSALFGVGEYRAAVKALEEAIFIKPDY-----ADAHCDLASALHAMGEDERAIEVFQKAIDLKPGHVDALYNLGG 311 (660)
Q Consensus 237 ~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~-----~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~La~ 311 (660)
-+..-|+-++..|+|++|..-|..||.+.|.. ...|.+.|.++++++.++.|+..+.++|+++|.+..++...+.
T Consensus 97 ~lK~EGN~~F~ngdyeeA~skY~~Ale~cp~~~~e~rsIly~Nraaa~iKl~k~e~aI~dcsKaiel~pty~kAl~RRAe 176 (271)
T KOG4234|consen 97 SLKKEGNELFKNGDYEEANSKYQEALESCPSTSTEERSILYSNRAAALIKLRKWESAIEDCSKAIELNPTYEKALERRAE 176 (271)
T ss_pred HHHHHHHHhhhcccHHHHHHHHHHHHHhCccccHHHHHHHHhhhHHHHHHhhhHHHHHHHHHhhHhcCchhHHHHHHHHH
Confidence 34455778888888888888888888888765 3467788888889999999999999999999998888888899
Q ss_pred HHHHhcCCCHHHHHHHHHHHHcccCCh
Q 006120 312 LYMDLGAGETEEAKKALKEALKMTNRV 338 (660)
Q Consensus 312 ~~~~~~~g~~~eA~~~~~~al~l~p~~ 338 (660)
+|..+ ..+++|+.-|++.++++|..
T Consensus 177 ayek~--ek~eealeDyKki~E~dPs~ 201 (271)
T KOG4234|consen 177 AYEKM--EKYEEALEDYKKILESDPSR 201 (271)
T ss_pred HHHhh--hhHHHHHHHHHHHHHhCcch
Confidence 99888 88999999999999988863
No 183
>PF13371 TPR_9: Tetratricopeptide repeat
Probab=98.45 E-value=1e-06 Score=69.65 Aligned_cols=66 Identities=27% Similarity=0.418 Sum_probs=38.0
Q ss_pred HHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhCCChHHHHHHHHHHHHhCCCCHHHHHH
Q 006120 243 SALFGVGEYRAAVKALEEAIFIKPDYADAHCDLASALHAMGEDERAIEVFQKAIDLKPGHVDALYN 308 (660)
Q Consensus 243 ~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~ 308 (660)
.++...+++++|+..+++++.++|+++..|..+|.++..+|++++|+..++++++..|+++.+...
T Consensus 3 ~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~~a~~~~~~g~~~~A~~~l~~~l~~~p~~~~~~~~ 68 (73)
T PF13371_consen 3 QIYLQQEDYEEALEVLERALELDPDDPELWLQRARCLFQLGRYEEALEDLERALELSPDDPDARAL 68 (73)
T ss_pred HHHHhCCCHHHHHHHHHHHHHhCcccchhhHHHHHHHHHhccHHHHHHHHHHHHHHCCCcHHHHHH
Confidence 455555555556666666555555555555555666656666666666666665555555544433
No 184
>PF14559 TPR_19: Tetratricopeptide repeat; PDB: 2R5S_A 3QDN_B 3QOU_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 3FP3_A 3LCA_A ....
Probab=98.45 E-value=6.6e-07 Score=69.67 Aligned_cols=68 Identities=25% Similarity=0.230 Sum_probs=62.5
Q ss_pred HHHCCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHH
Q 006120 211 LEGEGMVLSACEYYRESAILCPTHFRALKLLGSALFGVGEYRAAVKALEEAIFIKPDYADAHCDLASA 278 (660)
Q Consensus 211 ~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~ 278 (660)
+...|++++|+..|++++..+|++..++..+|.++...|++++|...+++++..+|+++.++..++.+
T Consensus 1 ll~~~~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~l~~~~~~~~~~~~~~~l~a~i 68 (68)
T PF14559_consen 1 LLKQGDYDEAIELLEKALQRNPDNPEARLLLAQCYLKQGQYDEAEELLERLLKQDPDNPEYQQLLAQI 68 (68)
T ss_dssp HHHTTHHHHHHHHHHHHHHHTTTSHHHHHHHHHHHHHTT-HHHHHHHHHCCHGGGTTHHHHHHHHHHH
T ss_pred ChhccCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCHHHHHHHHhcC
Confidence 35789999999999999999999999999999999999999999999999999999998888877754
No 185
>COG4105 ComL DNA uptake lipoprotein [General function prediction only]
Probab=98.44 E-value=8.8e-05 Score=71.68 Aligned_cols=173 Identities=25% Similarity=0.218 Sum_probs=141.2
Q ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhccCCCchhchHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCcH--
Q 006120 158 DVRPHFRAGNCLYVLGRYREAKEEYLLALEAAETGGNQWAYLLPQIYVNLGIALEGEGMVLSACEYYRESAILCPTHF-- 235 (660)
Q Consensus 158 ~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~-- 235 (660)
.+..++.-|...++.|++++|...|+.+....|..+- ...+.+.++.++.+.+++++|+...++-+.+.|.++
T Consensus 33 p~~~LY~~g~~~L~~gn~~~A~~~fe~l~~~~p~s~~-----~~qa~l~l~yA~Yk~~~y~~A~~~~drFi~lyP~~~n~ 107 (254)
T COG4105 33 PASELYNEGLTELQKGNYEEAIKYFEALDSRHPFSPY-----SEQAQLDLAYAYYKNGEYDLALAYIDRFIRLYPTHPNA 107 (254)
T ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCcc-----cHHHHHHHHHHHHhcccHHHHHHHHHHHHHhCCCCCCh
Confidence 4678999999999999999999999999988887543 568999999999999999999999999999998774
Q ss_pred -HHHHHHHHHHHHC--------CCHHHHHHHHHHHHHhCCCCHH-----------------HHHHHHHHHHhCCChHHHH
Q 006120 236 -RALKLLGSALFGV--------GEYRAAVKALEEAIFIKPDYAD-----------------AHCDLASALHAMGEDERAI 289 (660)
Q Consensus 236 -~~~~~lg~~~~~~--------g~~~~A~~~~~~al~~~p~~~~-----------------~~~~la~~~~~~g~~~~A~ 289 (660)
.+++..|.+++.. .-..+|+..++..+...|+..- --...|..|.+.|.+..|+
T Consensus 108 dY~~YlkgLs~~~~i~~~~rDq~~~~~A~~~f~~~i~ryPnS~Ya~dA~~~i~~~~d~LA~~Em~IaryY~kr~~~~AA~ 187 (254)
T COG4105 108 DYAYYLKGLSYFFQIDDVTRDQSAARAAFAAFKELVQRYPNSRYAPDAKARIVKLNDALAGHEMAIARYYLKRGAYVAAI 187 (254)
T ss_pred hHHHHHHHHHHhccCCccccCHHHHHHHHHHHHHHHHHCCCCcchhhHHHHHHHHHHHHHHHHHHHHHHHHHhcChHHHH
Confidence 4677778877643 2235788889999999998621 1235789999999999999
Q ss_pred HHHHHHHHhCCCC---HHHHHHHHHHHHHhcCCCHHHHHHHHHHHHccc-CCh
Q 006120 290 EVFQKAIDLKPGH---VDALYNLGGLYMDLGAGETEEAKKALKEALKMT-NRV 338 (660)
Q Consensus 290 ~~~~~al~~~p~~---~~a~~~La~~~~~~~~g~~~eA~~~~~~al~l~-p~~ 338 (660)
..++.+++..|+. .+++..+..+|..+ |-.++|.+.-+ .+..+ |+.
T Consensus 188 nR~~~v~e~y~~t~~~~eaL~~l~eaY~~l--gl~~~a~~~~~-vl~~N~p~s 237 (254)
T COG4105 188 NRFEEVLENYPDTSAVREALARLEEAYYAL--GLTDEAKKTAK-VLGANYPDS 237 (254)
T ss_pred HHHHHHHhccccccchHHHHHHHHHHHHHh--CChHHHHHHHH-HHHhcCCCC
Confidence 9999999987665 46888999999999 88888876544 44444 443
No 186
>COG4976 Predicted methyltransferase (contains TPR repeat) [General function prediction only]
Probab=98.43 E-value=4.9e-07 Score=84.30 Aligned_cols=189 Identities=19% Similarity=0.264 Sum_probs=115.9
Q ss_pred HHHHhCCChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHcccCChhHHHHHHHHHHHHHHhcc
Q 006120 277 SALHAMGEDERAIEVFQKAIDLKPGHVDALYNLGGLYMDLGAGETEEAKKALKEALKMTNRVELHDAVSHLKQLQKKKSK 356 (660)
Q Consensus 277 ~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~La~~~~~~~~g~~~eA~~~~~~al~l~p~~~~~~~~~~l~~l~~~~~~ 356 (660)
....+.++.+.|.+.|.+++++.|+....|+.+|....+. |+++.|.+.|++.++++|......++. | ...
T Consensus 3 ~~~~~~~D~~aaaely~qal~lap~w~~gwfR~g~~~eka--g~~daAa~a~~~~L~ldp~D~~gaa~k-L---a~l--- 73 (287)
T COG4976 3 YMLAESGDAEAAAELYNQALELAPEWAAGWFRLGEYTEKA--GEFDAAAAAYEEVLELDPEDHGGAALK-L---AVL--- 73 (287)
T ss_pred chhcccCChHHHHHHHHHHhhcCchhhhhhhhcchhhhhc--ccHHHHHHHHHHHHcCCcccccchhhh-H---Hhh---
Confidence 3455678888888888888888888888888888888887 888999999999988887643211110 0 000
Q ss_pred CCCCCCCCCCccccCcchHHhhchhhhhhhhHHHHhcCHHHHHHHHHhccCHHHHHHHhhCCCccccccCCCCCCCCccC
Q 006120 357 GNRGTNGEGGFDIVEPSKFKTVGERTTVRQDLANALEIRAFQKITRLSRCDVELLKKEMSETDVPVSYSGGGGPQKSIRK 436 (660)
Q Consensus 357 ~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~al~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~ir~ 436 (660)
+.+.... ++...|..+| ...+ .
T Consensus 74 ------g~~e~p~-------------~pP~aYVe~L--------FD~~-------------------------------A 95 (287)
T COG4976 74 ------GRGETPE-------------KPPSAYVETL--------FDQY-------------------------------A 95 (287)
T ss_pred ------cCCCCCC-------------CCchHHHHHH--------HHHH-------------------------------H
Confidence 0000000 0111111111 0000 2
Q ss_pred cchHHHHHhhhccCCCcchHHHHHHHHHHhhh-hccCC-Ccccccchhhhhhhccc---------CCCCHHH-HHHhhhh
Q 006120 437 PNLEEILRKFLHFLKPETFQGAVKAINERILS-VLDET-GSARVDLGMFYAILAPI---------CSGSPEK-RKRVAFD 504 (660)
Q Consensus 437 ~~~~~~~~~~iGY~S~df~~H~v~~l~~~~l~-~hDr~-g~~~fev~~y~~~~~~~---------~~~~~~~-r~r~~~d 504 (660)
.+|+..+...+||--|.+-..-++..-.+-|+ .+|-+ ||| +.+.-+.+. +..|+.+ +-|..||
T Consensus 96 e~Fd~~LVdkL~Y~vP~~l~emI~~~~~g~F~~~lDLGCGTG-----L~G~~lR~~a~~ltGvDiS~nMl~kA~eKg~YD 170 (287)
T COG4976 96 ERFDHILVDKLGYSVPELLAEMIGKADLGPFRRMLDLGCGTG-----LTGEALRDMADRLTGVDISENMLAKAHEKGLYD 170 (287)
T ss_pred HHHHHHHHHHhcCccHHHHHHHHHhccCCccceeeecccCcC-----cccHhHHHHHhhccCCchhHHHHHHHHhccchH
Confidence 44555566667777776666666665555444 47777 875 333333222 2224554 6666888
Q ss_pred hhc------ccccCCCC--ccchhccHHHHHHHhHHHhccC
Q 006120 505 ALL------WRPVNEGS--TQVRKVDAVRYIKLLRAVYIPS 537 (660)
Q Consensus 505 ~~~------~~~~~~~~--a~~i~~D~~~~l~dL~~~~~~~ 537 (660)
++. +....... +.|+++||+.|+++|..+|..-
T Consensus 171 ~L~~Aea~~Fl~~~~~er~DLi~AaDVl~YlG~Le~~~~~a 211 (287)
T COG4976 171 TLYVAEAVLFLEDLTQERFDLIVAADVLPYLGALEGLFAGA 211 (287)
T ss_pred HHHHHHHHHHhhhccCCcccchhhhhHHHhhcchhhHHHHH
Confidence 776 55433333 9999999999999999999873
No 187
>KOG4648 consensus Uncharacterized conserved protein, contains LRR repeats [Function unknown]
Probab=98.41 E-value=7.4e-07 Score=87.69 Aligned_cols=96 Identities=26% Similarity=0.228 Sum_probs=53.6
Q ss_pred HHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhCCChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCC
Q 006120 240 LLGSALFGVGEYRAAVKALEEAIFIKPDYADAHCDLASALHAMGEDERAIEVFQKAIDLKPGHVDALYNLGGLYMDLGAG 319 (660)
Q Consensus 240 ~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~La~~~~~~~~g 319 (660)
..|+-|+++|.|++|+.+|.+++..+|.++..+.|.+.+|+++.++..|...+..|+.++..+..+|...+.+-..+ |
T Consensus 102 E~GN~yFKQgKy~EAIDCYs~~ia~~P~NpV~~~NRA~AYlk~K~FA~AE~DC~~AiaLd~~Y~KAYSRR~~AR~~L--g 179 (536)
T KOG4648|consen 102 ERGNTYFKQGKYEEAIDCYSTAIAVYPHNPVYHINRALAYLKQKSFAQAEEDCEAAIALDKLYVKAYSRRMQARESL--G 179 (536)
T ss_pred HhhhhhhhccchhHHHHHhhhhhccCCCCccchhhHHHHHHHHHHHHHHHHhHHHHHHhhHHHHHHHHHHHHHHHHH--h
Confidence 34555555555555555555555555555555555555555555555555555555555555555555555555555 5
Q ss_pred CHHHHHHHHHHHHcccCC
Q 006120 320 ETEEAKKALKEALKMTNR 337 (660)
Q Consensus 320 ~~~eA~~~~~~al~l~p~ 337 (660)
+..+|.+.++.+|++.|+
T Consensus 180 ~~~EAKkD~E~vL~LEP~ 197 (536)
T KOG4648|consen 180 NNMEAKKDCETVLALEPK 197 (536)
T ss_pred hHHHHHHhHHHHHhhCcc
Confidence 555555555555555554
No 188
>KOG4234 consensus TPR repeat-containing protein [General function prediction only]
Probab=98.40 E-value=4e-06 Score=76.78 Aligned_cols=103 Identities=27% Similarity=0.276 Sum_probs=61.2
Q ss_pred HHHHHHcCCHHHHHHHHHHHHHHhccCCCchhchHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHH
Q 006120 166 GNCLYVLGRYREAKEEYLLALEAAETGGNQWAYLLPQIYVNLGIALEGEGMVLSACEYYRESAILCPTHFRALKLLGSAL 245 (660)
Q Consensus 166 a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~ 245 (660)
|+-++..|+|.+|..-|..|+.+.|...... ....|.+.|.++++++.++.|+....++++++|.+..++...+.+|
T Consensus 102 GN~~F~ngdyeeA~skY~~Ale~cp~~~~e~---rsIly~Nraaa~iKl~k~e~aI~dcsKaiel~pty~kAl~RRAeay 178 (271)
T KOG4234|consen 102 GNELFKNGDYEEANSKYQEALESCPSTSTEE---RSILYSNRAAALIKLRKWESAIEDCSKAIELNPTYEKALERRAEAY 178 (271)
T ss_pred HHHhhhcccHHHHHHHHHHHHHhCccccHHH---HHHHHhhhHHHHHHhhhHHHHHHHHHhhHhcCchhHHHHHHHHHHH
Confidence 5555566666666666666666665543322 4455556666666666666666666666666666666666666666
Q ss_pred HHCCCHHHHHHHHHHHHHhCCCCHHH
Q 006120 246 FGVGEYRAAVKALEEAIFIKPDYADA 271 (660)
Q Consensus 246 ~~~g~~~~A~~~~~~al~~~p~~~~~ 271 (660)
.++..+++|+..|.+.++++|....+
T Consensus 179 ek~ek~eealeDyKki~E~dPs~~ea 204 (271)
T KOG4234|consen 179 EKMEKYEEALEDYKKILESDPSRREA 204 (271)
T ss_pred HhhhhHHHHHHHHHHHHHhCcchHHH
Confidence 66666666666666666666654433
No 189
>KOG2796 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.39 E-value=0.00014 Score=69.73 Aligned_cols=221 Identities=16% Similarity=0.160 Sum_probs=170.1
Q ss_pred CcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-------------CCC-----H-HHHHHHHHHHHHcCCHHHHHH
Q 006120 120 SREEAFDGHMAIGRVLYEHQLFKEALVSFKRACELQ-------------PTD-----V-RPHFRAGNCLYVLGRYREAKE 180 (660)
Q Consensus 120 ~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-------------p~~-----~-~~~~~la~~~~~~g~~~~A~~ 180 (660)
........|...-.++.+...+++|..-+...-+.+ |+. + .....-|.+....|+..+.+.
T Consensus 64 ~t~~~lq~wT~r~~~l~kLR~~~~a~~EL~~f~~lD~pdl~Yey~p~iyp~rrGSmVPFsmR~lhAe~~~~lgnpqesLd 143 (366)
T KOG2796|consen 64 HTTDSLQLWTVRLALLVKLRLFQNAEMELEPFGNLDQPDLYYEYYPHVYPGRRGSMVPFSMRILHAELQQYLGNPQESLD 143 (366)
T ss_pred cchhHHHHHHHHHHHHHHHhhhHHHHhhhhhhccCCCcceeeeeccccCCCCcCccccHHHHHHHHHHHHhcCCcHHHHH
Confidence 344455677777777888888888887766555443 211 1 233455777888888888776
Q ss_pred HHHHHHHH-------hccC------CCchhchHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHH
Q 006120 181 EYLLALEA-------AETG------GNQWAYLLPQIYVNLGIALEGEGMVLSACEYYRESAILC-PTHFRALKLLGSALF 246 (660)
Q Consensus 181 ~~~~al~~-------~p~~------~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~ 246 (660)
-+...... .... -..|......+.+.+..++.-.|.|.-.+..+.+.++.+ |..+.....||.+.+
T Consensus 144 Rl~~L~~~V~~ii~~~e~~~~~ESsv~lW~KRl~~Vmy~~~~~llG~kEy~iS~d~~~~vi~~~~e~~p~L~s~Lgr~~M 223 (366)
T KOG2796|consen 144 RLHKLKTVVSKILANLEQGLAEESSIRLWRKRLGRVMYSMANCLLGMKEYVLSVDAYHSVIKYYPEQEPQLLSGLGRISM 223 (366)
T ss_pred HHHHHHHHHHHHHHHHHhccchhhHHHHHHHHHHHHHHHHHHHHhcchhhhhhHHHHHHHHHhCCcccHHHHHHHHHHHH
Confidence 66554332 1111 112333355677888899999999999999999999988 667888899999999
Q ss_pred HCCCHHHHHHHHHHHHHhC------CCCHHHHHHHHHHHHhCCChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCCC
Q 006120 247 GVGEYRAAVKALEEAIFIK------PDYADAHCDLASALHAMGEDERAIEVFQKAIDLKPGHVDALYNLGGLYMDLGAGE 320 (660)
Q Consensus 247 ~~g~~~~A~~~~~~al~~~------p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~La~~~~~~~~g~ 320 (660)
+.|+.+.|..++++.-+.. .....+..+.+.++.-.+++.+|...+.+++..+|.++.+..+.+.++..+ |+
T Consensus 224 Q~GD~k~a~~yf~~vek~~~kL~~~q~~~~V~~n~a~i~lg~nn~a~a~r~~~~i~~~D~~~~~a~NnKALcllYl--g~ 301 (366)
T KOG2796|consen 224 QIGDIKTAEKYFQDVEKVTQKLDGLQGKIMVLMNSAFLHLGQNNFAEAHRFFTEILRMDPRNAVANNNKALCLLYL--GK 301 (366)
T ss_pred hcccHHHHHHHHHHHHHHHhhhhccchhHHHHhhhhhheecccchHHHHHHHhhccccCCCchhhhchHHHHHHHH--HH
Confidence 9999999999999654332 233566778899999999999999999999999999999999999999999 99
Q ss_pred HHHHHHHHHHHHcccCChhHHH
Q 006120 321 TEEAKKALKEALKMTNRVELHD 342 (660)
Q Consensus 321 ~~eA~~~~~~al~l~p~~~~~~ 342 (660)
..+|++.++.+++..|.+...+
T Consensus 302 l~DAiK~~e~~~~~~P~~~l~e 323 (366)
T KOG2796|consen 302 LKDALKQLEAMVQQDPRHYLHE 323 (366)
T ss_pred HHHHHHHHHHHhccCCccchhh
Confidence 9999999999999999865543
No 190
>PF13371 TPR_9: Tetratricopeptide repeat
Probab=98.38 E-value=2e-06 Score=67.96 Aligned_cols=71 Identities=25% Similarity=0.225 Sum_probs=65.3
Q ss_pred HHHHHHHCCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHH
Q 006120 207 LGIALEGEGMVLSACEYYRESAILCPTHFRALKLLGSALFGVGEYRAAVKALEEAIFIKPDYADAHCDLAS 277 (660)
Q Consensus 207 la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~ 277 (660)
|..++...+++++|+.++++++.++|+++..+..+|.++..+|++.+|+..++++++..|+++.+....+.
T Consensus 1 l~~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~~a~~~~~~g~~~~A~~~l~~~l~~~p~~~~~~~~~a~ 71 (73)
T PF13371_consen 1 LKQIYLQQEDYEEALEVLERALELDPDDPELWLQRARCLFQLGRYEEALEDLERALELSPDDPDARALRAM 71 (73)
T ss_pred CHHHHHhCCCHHHHHHHHHHHHHhCcccchhhHHHHHHHHHhccHHHHHHHHHHHHHHCCCcHHHHHHHHh
Confidence 35688999999999999999999999999999999999999999999999999999999998877665543
No 191
>COG1729 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=98.38 E-value=9e-06 Score=79.16 Aligned_cols=106 Identities=20% Similarity=0.266 Sum_probs=74.4
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC---HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhccCCCchhchHHHHH
Q 006120 128 HMAIGRVLYEHQLFKEALVSFKRACELQPTD---VRPHFRAGNCLYVLGRYREAKEEYLLALEAAETGGNQWAYLLPQIY 204 (660)
Q Consensus 128 ~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~---~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~ 204 (660)
.|..|.-++..|+|..|...|..-++..|+. +.+++.||.+++.+|++++|...|..+++-.|+.+. .++++
T Consensus 144 ~Y~~A~~~~ksgdy~~A~~~F~~fi~~YP~s~~~~nA~yWLGe~~y~qg~y~~Aa~~f~~~~k~~P~s~K-----Apdal 218 (262)
T COG1729 144 LYNAALDLYKSGDYAEAEQAFQAFIKKYPNSTYTPNAYYWLGESLYAQGDYEDAAYIFARVVKDYPKSPK-----APDAL 218 (262)
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCcccchhHHHHHHHHHhcccchHHHHHHHHHHHhCCCCCC-----ChHHH
Confidence 5667777777777777777777777777663 467777777777777777777777777777666543 45677
Q ss_pred HHHHHHHHHCCCHHHHHHHHHHHHHhCCCcHHHH
Q 006120 205 VNLGIALEGEGMVLSACEYYRESAILCPTHFRAL 238 (660)
Q Consensus 205 ~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~ 238 (660)
+.+|.+...+|+.++|...|+++++..|+...+.
T Consensus 219 lKlg~~~~~l~~~d~A~atl~qv~k~YP~t~aA~ 252 (262)
T COG1729 219 LKLGVSLGRLGNTDEACATLQQVIKRYPGTDAAK 252 (262)
T ss_pred HHHHHHHHHhcCHHHHHHHHHHHHHHCCCCHHHH
Confidence 7777777777777777777777777777665543
No 192
>COG1729 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=98.37 E-value=1e-05 Score=78.86 Aligned_cols=105 Identities=23% Similarity=0.287 Sum_probs=90.6
Q ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHhCCCc---HHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCC---HHHHHHHHH
Q 006120 204 YVNLGIALEGEGMVLSACEYYRESAILCPTH---FRALKLLGSALFGVGEYRAAVKALEEAIFIKPDY---ADAHCDLAS 277 (660)
Q Consensus 204 ~~~la~~~~~~g~~~~A~~~~~~al~~~p~~---~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~---~~~~~~la~ 277 (660)
.++.|.-+...|+|.+|...|..-++..|+. +.+++.||.+++.+|++++|...|..+++-.|+. +++++.+|.
T Consensus 144 ~Y~~A~~~~ksgdy~~A~~~F~~fi~~YP~s~~~~nA~yWLGe~~y~qg~y~~Aa~~f~~~~k~~P~s~KApdallKlg~ 223 (262)
T COG1729 144 LYNAALDLYKSGDYAEAEQAFQAFIKKYPNSTYTPNAYYWLGESLYAQGDYEDAAYIFARVVKDYPKSPKAPDALLKLGV 223 (262)
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCcccchhHHHHHHHHHhcccchHHHHHHHHHHHhCCCCCCChHHHHHHHH
Confidence 6778888888899999999999999988876 6788999999999999999999999998887765 688999999
Q ss_pred HHHhCCChHHHHHHHHHHHHhCCCCHHHHHH
Q 006120 278 ALHAMGEDERAIEVFQKAIDLKPGHVDALYN 308 (660)
Q Consensus 278 ~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~ 308 (660)
+...+|+.++|...|+++++..|+...+...
T Consensus 224 ~~~~l~~~d~A~atl~qv~k~YP~t~aA~~A 254 (262)
T COG1729 224 SLGRLGNTDEACATLQQVIKRYPGTDAAKLA 254 (262)
T ss_pred HHHHhcCHHHHHHHHHHHHHHCCCCHHHHHH
Confidence 9999999999999999999999987665543
No 193
>KOG4555 consensus TPR repeat-containing protein [Function unknown]
Probab=98.37 E-value=2.1e-05 Score=67.09 Aligned_cols=104 Identities=22% Similarity=0.120 Sum_probs=91.6
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhccCCCchhchHHHHHH
Q 006120 126 DGHMAIGRVLYEHQLFKEALVSFKRACELQPTDVRPHFRAGNCLYVLGRYREAKEEYLLALEAAETGGNQWAYLLPQIYV 205 (660)
Q Consensus 126 ~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~ 205 (660)
..+-..|..+...|+.+.|++.|.+++.+.|..+.+|++.+..+..+|+.++|+..+++++++....... ...++.
T Consensus 44 ~~LEl~~valaE~g~Ld~AlE~F~qal~l~P~raSayNNRAQa~RLq~~~e~ALdDLn~AleLag~~trt----acqa~v 119 (175)
T KOG4555|consen 44 RELELKAIALAEAGDLDGALELFGQALCLAPERASAYNNRAQALRLQGDDEEALDDLNKALELAGDQTRT----ACQAFV 119 (175)
T ss_pred HHHHHHHHHHHhccchHHHHHHHHHHHHhcccchHhhccHHHHHHHcCChHHHHHHHHHHHHhcCccchH----HHHHHH
Confidence 3455678888999999999999999999999999999999999999999999999999999997554222 567899
Q ss_pred HHHHHHHHCCCHHHHHHHHHHHHHhCCC
Q 006120 206 NLGIALEGEGMVLSACEYYRESAILCPT 233 (660)
Q Consensus 206 ~la~~~~~~g~~~~A~~~~~~al~~~p~ 233 (660)
..|.+|..+|+-+.|..-|+.+-++...
T Consensus 120 QRg~lyRl~g~dd~AR~DFe~AA~LGS~ 147 (175)
T KOG4555|consen 120 QRGLLYRLLGNDDAARADFEAAAQLGSK 147 (175)
T ss_pred HHHHHHHHhCchHHHHHhHHHHHHhCCH
Confidence 9999999999999999999998776544
No 194
>KOG1585 consensus Protein required for fusion of vesicles in vesicular transport, gamma-SNAP [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.37 E-value=0.00015 Score=68.68 Aligned_cols=218 Identities=14% Similarity=0.054 Sum_probs=149.1
Q ss_pred HHHHHHHHHHhh-ccCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC------HHHHHHHHHHHHHcCCHHHH
Q 006120 106 KELGVLRNRADG-ARSREEAFDGHMAIGRVLYEHQLFKEALVSFKRACELQPTD------VRPHFRAGNCLYVLGRYREA 178 (660)
Q Consensus 106 ~Al~~l~~a~~~-~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~------~~~~~~la~~~~~~g~~~~A 178 (660)
++.+...+.... .++.......+..-+..|...+++++|-.++.++.+-..++ +.++-..+.+...+..+.++
T Consensus 11 ea~e~~a~t~~~wkad~dgaas~yekAAvafRnAk~feKakdcLlkA~~~yEnnrslfhAAKayEqaamLake~~klsEv 90 (308)
T KOG1585|consen 11 EADEMTALTLTRWKADWDGAASLYEKAAVAFRNAKKFEKAKDCLLKASKGYENNRSLFHAAKAYEQAAMLAKELSKLSEV 90 (308)
T ss_pred HHHHHHHHHhhccCCCchhhHHHHHHHHHHHHhhccHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHHHHhHHH
Confidence 344444333332 23444555667777888888899999999999998655433 34566677788888899999
Q ss_pred HHHHHHHHHHhccCCCchhchHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCc------HHHHHHHHHHHHHCCCHH
Q 006120 179 KEEYLLALEAAETGGNQWAYLLPQIYVNLGIALEGEGMVLSACEYYRESAILCPTH------FRALKLLGSALFGVGEYR 252 (660)
Q Consensus 179 ~~~~~~al~~~p~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~------~~~~~~lg~~~~~~g~~~ 252 (660)
..+++++..+.-..+.... .+.++ ..+--....-++++|+++|++++.+-... .+.+...++++.+..++.
T Consensus 91 vdl~eKAs~lY~E~Gspdt--AAmal-eKAak~lenv~Pd~AlqlYqralavve~~dr~~ma~el~gk~sr~lVrl~kf~ 167 (308)
T KOG1585|consen 91 VDLYEKASELYVECGSPDT--AAMAL-EKAAKALENVKPDDALQLYQRALAVVEEDDRDQMAFELYGKCSRVLVRLEKFT 167 (308)
T ss_pred HHHHHHHHHHHHHhCCcch--HHHHH-HHHHHHhhcCCHHHHHHHHHHHHHHHhccchHHHHHHHHHHhhhHhhhhHHhh
Confidence 9999999988766555442 33333 33334456678999999999988764332 445667788888889998
Q ss_pred HHHHHHHHHHHh------CCCCHHHHHHHHHHHHhCCChHHHHHHHHHHHHh----CCCCHHHHHHHHHHHHHhcCCCHH
Q 006120 253 AAVKALEEAIFI------KPDYADAHCDLASALHAMGEDERAIEVFQKAIDL----KPGHVDALYNLGGLYMDLGAGETE 322 (660)
Q Consensus 253 ~A~~~~~~al~~------~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~----~p~~~~a~~~La~~~~~~~~g~~~ 322 (660)
+|-..+.+-... .++-...+.....+++...+|..|..+++..-++ .|++..+..+|-..|-. |+.+
T Consensus 168 Eaa~a~lKe~~~~~~~~~y~~~~k~~va~ilv~L~~~Dyv~aekc~r~~~qip~f~~sed~r~lenLL~ayd~---gD~E 244 (308)
T KOG1585|consen 168 EAATAFLKEGVAADKCDAYNSQCKAYVAAILVYLYAHDYVQAEKCYRDCSQIPAFLKSEDSRSLENLLTAYDE---GDIE 244 (308)
T ss_pred HHHHHHHHhhhHHHHHhhcccHHHHHHHHHHHHhhHHHHHHHHHHhcchhcCccccChHHHHHHHHHHHHhcc---CCHH
Confidence 888777664433 2333344555556666777999999999887765 35566778888777753 6877
Q ss_pred HHHHHHH
Q 006120 323 EAKKALK 329 (660)
Q Consensus 323 eA~~~~~ 329 (660)
+....+.
T Consensus 245 ~~~kvl~ 251 (308)
T KOG1585|consen 245 EIKKVLS 251 (308)
T ss_pred HHHHHHc
Confidence 7766554
No 195
>KOG1586 consensus Protein required for fusion of vesicles in vesicular transport, alpha-SNAP [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.34 E-value=0.00012 Score=68.90 Aligned_cols=176 Identities=15% Similarity=0.095 Sum_probs=97.9
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC-----C-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhccCCCchhc
Q 006120 125 FDGHMAIGRVLYEHQLFKEALVSFKRACELQP-----T-DVRPHFRAGNCLYVLGRYREAKEEYLLALEAAETGGNQWAY 198 (660)
Q Consensus 125 ~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p-----~-~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~ 198 (660)
.+.+..-|..|....++..|-..|.++-+..- . .+..+...+.+|.+. ++.+|..++++++++..+.+.-..
T Consensus 34 adl~~~Aan~yklaK~w~~AG~aflkaA~~h~k~~skhDaat~YveA~~cykk~-~~~eAv~cL~~aieIyt~~Grf~~- 111 (288)
T KOG1586|consen 34 AELYERAANMYKLAKNWSAAGDAFLKAADLHLKAGSKHDAATTYVEAANCYKKV-DPEEAVNCLEKAIEIYTDMGRFTM- 111 (288)
T ss_pred HHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHhcCCchhHHHHHHHHHHHhhcc-ChHHHHHHHHHHHHHHHhhhHHHH-
Confidence 34444556666666666666666666655421 1 233444444444433 677777777777777666444332
Q ss_pred hHHHHHHHHHHHHHHC-CCHHHHHHHHHHHHHhCCCc------HHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCH--
Q 006120 199 LLPQIYVNLGIALEGE-GMVLSACEYYRESAILCPTH------FRALKLLGSALFGVGEYRAAVKALEEAIFIKPDYA-- 269 (660)
Q Consensus 199 ~~~~~~~~la~~~~~~-g~~~~A~~~~~~al~~~p~~------~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~-- 269 (660)
-+..+..+|.+|... .++++|+.+|+++-+..... -..+...+......++|.+|+..|++.....-++.
T Consensus 112 -aAk~~~~iaEiyEsdl~d~ekaI~~YE~Aae~yk~ees~ssANKC~lKvA~yaa~leqY~~Ai~iyeqva~~s~~n~LL 190 (288)
T KOG1586|consen 112 -AAKHHIEIAEIYESDLQDFEKAIAHYEQAAEYYKGEESVSSANKCLLKVAQYAAQLEQYSKAIDIYEQVARSSLDNNLL 190 (288)
T ss_pred -HHhhhhhHHHHHhhhHHHHHHHHHHHHHHHHHHcchhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccchHH
Confidence 445555666666554 66677777777665543221 12334445555556666666666666655544332
Q ss_pred -----HHHHHHHHHHHhCCChHHHHHHHHHHHHhCCCCH
Q 006120 270 -----DAHCDLASALHAMGEDERAIEVFQKAIDLKPGHV 303 (660)
Q Consensus 270 -----~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~ 303 (660)
..++.-|.|++-..+.-.+...+++..+++|...
T Consensus 191 Kys~KdyflkAgLChl~~~D~v~a~~ALeky~~~dP~F~ 229 (288)
T KOG1586|consen 191 KYSAKDYFLKAGLCHLCKADEVNAQRALEKYQELDPAFT 229 (288)
T ss_pred HhHHHHHHHHHHHHhHhcccHHHHHHHHHHHHhcCCccc
Confidence 1233445555555666666666666666666553
No 196
>PF13424 TPR_12: Tetratricopeptide repeat; PDB: 3RO2_A 3Q15_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 4A1S_B 3CEQ_B 3EDT_H ....
Probab=98.32 E-value=1.6e-06 Score=69.53 Aligned_cols=74 Identities=27% Similarity=0.282 Sum_probs=60.8
Q ss_pred CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhccCCCchhchHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh
Q 006120 156 PTDVRPHFRAGNCLYVLGRYREAKEEYLLALEAAETGGNQWAYLLPQIYVNLGIALEGEGMVLSACEYYRESAIL 230 (660)
Q Consensus 156 p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~ 230 (660)
|+.+.++.++|.+|..+|++++|+.+|++++++....++.. ...+.++.++|.++..+|++++|++++++++++
T Consensus 2 ~~~a~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~-~~~a~~~~~lg~~~~~~g~~~~A~~~~~~al~i 75 (78)
T PF13424_consen 2 PDTANAYNNLARVYRELGRYDEALDYYEKALDIEEQLGDDH-PDTANTLNNLGECYYRLGDYEEALEYYQKALDI 75 (78)
T ss_dssp HHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHTTTHH-HHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHCCCC-HHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh
Confidence 34467889999999999999999999999999854444322 225889999999999999999999999999875
No 197
>KOG3081 consensus Vesicle coat complex COPI, epsilon subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.31 E-value=0.00018 Score=69.23 Aligned_cols=163 Identities=17% Similarity=0.144 Sum_probs=133.5
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhccCCCchhchHHHHHH
Q 006120 126 DGHMAIGRVLYEHQLFKEALVSFKRACELQPTDVRPHFRAGNCLYVLGRYREAKEEYLLALEAAETGGNQWAYLLPQIYV 205 (660)
Q Consensus 126 ~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~ 205 (660)
..+..-|.++...|++++|+...... .+.++...--.++.++.+.+-|.+.+++..+++.+ .++.
T Consensus 109 i~~l~aa~i~~~~~~~deAl~~~~~~-----~~lE~~Al~VqI~lk~~r~d~A~~~lk~mq~ided----------~tLt 173 (299)
T KOG3081|consen 109 IDLLLAAIIYMHDGDFDEALKALHLG-----ENLEAAALNVQILLKMHRFDLAEKELKKMQQIDED----------ATLT 173 (299)
T ss_pred HHHHHhhHHhhcCCChHHHHHHHhcc-----chHHHHHHHHHHHHHHHHHHHHHHHHHHHHccchH----------HHHH
Confidence 34556688999999999999887763 34566666678899999999999999999998765 3344
Q ss_pred HHHHHHHH----CCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHh
Q 006120 206 NLGIALEG----EGMVLSACEYYRESAILCPTHFRALKLLGSALFGVGEYRAAVKALEEAIFIKPDYADAHCDLASALHA 281 (660)
Q Consensus 206 ~la~~~~~----~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~ 281 (660)
.||..+.. .+.+.+|.-+|++.-+..|..+.....++.+...+|+|++|...++.++..++++++.+.|+-.+-..
T Consensus 174 QLA~awv~la~ggek~qdAfyifeE~s~k~~~T~~llnG~Av~~l~~~~~eeAe~lL~eaL~kd~~dpetL~Nliv~a~~ 253 (299)
T KOG3081|consen 174 QLAQAWVKLATGGEKIQDAFYIFEELSEKTPPTPLLLNGQAVCHLQLGRYEEAESLLEEALDKDAKDPETLANLIVLALH 253 (299)
T ss_pred HHHHHHHHHhccchhhhhHHHHHHHHhcccCCChHHHccHHHHHHHhcCHHHHHHHHHHHHhccCCCHHHHHHHHHHHHH
Confidence 44444432 35689999999999888888899999999999999999999999999999999999999999999999
Q ss_pred CCChHHHHH-HHHHHHHhCCCCH
Q 006120 282 MGEDERAIE-VFQKAIDLKPGHV 303 (660)
Q Consensus 282 ~g~~~~A~~-~~~~al~~~p~~~ 303 (660)
+|+..++.. .+.+.....|.++
T Consensus 254 ~Gkd~~~~~r~l~QLk~~~p~h~ 276 (299)
T KOG3081|consen 254 LGKDAEVTERNLSQLKLSHPEHP 276 (299)
T ss_pred hCCChHHHHHHHHHHHhcCCcch
Confidence 999877754 5556666677765
No 198
>KOG4555 consensus TPR repeat-containing protein [Function unknown]
Probab=98.30 E-value=3.3e-05 Score=65.86 Aligned_cols=102 Identities=23% Similarity=0.224 Sum_probs=86.9
Q ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCC----HHHHHHHH
Q 006120 201 PQIYVNLGIALEGEGMVLSACEYYRESAILCPTHFRALKLLGSALFGVGEYRAAVKALEEAIFIKPDY----ADAHCDLA 276 (660)
Q Consensus 201 ~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~----~~~~~~la 276 (660)
...+-..|..+...|+.+.|++.|.+++.+.|..+.+|++.+..+.-+|+.++|+..+++++++..+. -.++...|
T Consensus 43 S~~LEl~~valaE~g~Ld~AlE~F~qal~l~P~raSayNNRAQa~RLq~~~e~ALdDLn~AleLag~~trtacqa~vQRg 122 (175)
T KOG4555|consen 43 SRELELKAIALAEAGDLDGALELFGQALCLAPERASAYNNRAQALRLQGDDEEALDDLNKALELAGDQTRTACQAFVQRG 122 (175)
T ss_pred HHHHHHHHHHHHhccchHHHHHHHHHHHHhcccchHhhccHHHHHHHcCChHHHHHHHHHHHHhcCccchHHHHHHHHHH
Confidence 34455567788889999999999999999999999999999999999999999999999999997554 34678889
Q ss_pred HHHHhCCChHHHHHHHHHHHHhCCCC
Q 006120 277 SALHAMGEDERAIEVFQKAIDLKPGH 302 (660)
Q Consensus 277 ~~~~~~g~~~~A~~~~~~al~~~p~~ 302 (660)
.+|..+|+.+.|...|+.+-++....
T Consensus 123 ~lyRl~g~dd~AR~DFe~AA~LGS~F 148 (175)
T KOG4555|consen 123 LLYRLLGNDDAARADFEAAAQLGSKF 148 (175)
T ss_pred HHHHHhCchHHHHHhHHHHHHhCCHH
Confidence 99999999999999999888776543
No 199
>PF13512 TPR_18: Tetratricopeptide repeat
Probab=98.29 E-value=2.4e-05 Score=69.06 Aligned_cols=87 Identities=15% Similarity=0.142 Sum_probs=75.4
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC---CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhccCCCchhchHH
Q 006120 125 FDGHMAIGRVLYEHQLFKEALVSFKRACELQPT---DVRPHFRAGNCLYVLGRYREAKEEYLLALEAAETGGNQWAYLLP 201 (660)
Q Consensus 125 ~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~---~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~ 201 (660)
...++..|...+..|+|++|++.|+.+....|. ...+...++.+|+..+++++|+..+++.++++|.++. ..
T Consensus 10 ~~~ly~~a~~~l~~~~Y~~A~~~le~L~~ryP~g~ya~qAqL~l~yayy~~~~y~~A~a~~~rFirLhP~hp~-----vd 84 (142)
T PF13512_consen 10 PQELYQEAQEALQKGNYEEAIKQLEALDTRYPFGEYAEQAQLDLAYAYYKQGDYEEAIAAYDRFIRLHPTHPN-----VD 84 (142)
T ss_pred HHHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCCCcccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCCC-----cc
Confidence 467889999999999999999999999998876 4578899999999999999999999999999999776 56
Q ss_pred HHHHHHHHHHHHCCC
Q 006120 202 QIYVNLGIALEGEGM 216 (660)
Q Consensus 202 ~~~~~la~~~~~~g~ 216 (660)
.+++..|.++..+..
T Consensus 85 Ya~Y~~gL~~~~~~~ 99 (142)
T PF13512_consen 85 YAYYMRGLSYYEQDE 99 (142)
T ss_pred HHHHHHHHHHHHHhh
Confidence 778888887776654
No 200
>PLN03098 LPA1 LOW PSII ACCUMULATION1; Provisional
Probab=98.27 E-value=3.7e-06 Score=87.60 Aligned_cols=65 Identities=23% Similarity=0.130 Sum_probs=36.2
Q ss_pred HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCcHHH---HHHHHHHHHHCCCHHHHHHHHHHHHHh
Q 006120 200 LPQIYVNLGIALEGEGMVLSACEYYRESAILCPTHFRA---LKLLGSALFGVGEYRAAVKALEEAIFI 264 (660)
Q Consensus 200 ~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~---~~~lg~~~~~~g~~~~A~~~~~~al~~ 264 (660)
.+..++++|.+|..+|+|++|+..|+++++++|++..+ |+++|.+|..+|++++|+.++++|+++
T Consensus 74 ~a~a~~NLG~AL~~lGryeEAIa~f~rALeL~Pd~aeA~~A~yNLAcaya~LGr~dEAla~LrrALel 141 (453)
T PLN03098 74 TAEDAVNLGLSLFSKGRVKDALAQFETALELNPNPDEAQAAYYNKACCHAYREEGKKAADCLRTALRD 141 (453)
T ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 44555555555555555555555555555555555432 555555555555555555555555554
No 201
>KOG2796 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.26 E-value=5.7e-05 Score=72.22 Aligned_cols=201 Identities=18% Similarity=0.229 Sum_probs=134.5
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHhhccCcHHHHHHHHHHHHHHHHcCCH-HHHHHHHHHHHHhCCCCHHHHHHHHHH
Q 006120 90 KRVFWEESTHDYAVFVKELGVLRNRADGARSREEAFDGHMAIGRVLYEHQLF-KEALVSFKRACELQPTDVRPHFRAGNC 168 (660)
Q Consensus 90 ~~~~l~~~~~~~g~~~~Al~~l~~a~~~~~~~~~~~~~~~~lg~~~~~~g~~-~~A~~~~~~al~~~p~~~~~~~~la~~ 168 (660)
.++..+++....|+-++.+..+........+ ...-.+++.. +..++..++-+ ..+.+.+..+
T Consensus 124 mR~lhAe~~~~lgnpqesLdRl~~L~~~V~~-----------ii~~~e~~~~~ESsv~lW~KRl------~~Vmy~~~~~ 186 (366)
T KOG2796|consen 124 MRILHAELQQYLGNPQESLDRLHKLKTVVSK-----------ILANLEQGLAEESSIRLWRKRL------GRVMYSMANC 186 (366)
T ss_pred HHHHHHHHHHhcCCcHHHHHHHHHHHHHHHH-----------HHHHHHhccchhhHHHHHHHHH------HHHHHHHHHH
Confidence 3444466666667777766666544332111 1111222222 44444444432 3566777788
Q ss_pred HHHcCCHHHHHHHHHHHHHHhccCCCchhchHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh----C--CCcHHHHHHHH
Q 006120 169 LYVLGRYREAKEEYLLALEAAETGGNQWAYLLPQIYVNLGIALEGEGMVLSACEYYRESAIL----C--PTHFRALKLLG 242 (660)
Q Consensus 169 ~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~----~--p~~~~~~~~lg 242 (660)
+.-.|+|.-....+.+.++.+|.. .+.....+|.+.++.|+...|..++++.-+. + .....+..+.+
T Consensus 187 llG~kEy~iS~d~~~~vi~~~~e~-------~p~L~s~Lgr~~MQ~GD~k~a~~yf~~vek~~~kL~~~q~~~~V~~n~a 259 (366)
T KOG2796|consen 187 LLGMKEYVLSVDAYHSVIKYYPEQ-------EPQLLSGLGRISMQIGDIKTAEKYFQDVEKVTQKLDGLQGKIMVLMNSA 259 (366)
T ss_pred HhcchhhhhhHHHHHHHHHhCCcc-------cHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHhhhhccchhHHHHhhhh
Confidence 888888888888888888877443 5677778888888888888888888854332 2 22344666777
Q ss_pred HHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhCCChHHHHHHHHHHHHhCCCCH---HHHHHHHHHHH
Q 006120 243 SALFGVGEYRAAVKALEEAIFIKPDYADAHCDLASALHAMGEDERAIEVFQKAIDLKPGHV---DALYNLGGLYM 314 (660)
Q Consensus 243 ~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~---~a~~~La~~~~ 314 (660)
.++.-.+++.+|...+.+.+..+|.++.+-++.|.|++..|+..+|++.++.+++..|... ....+|-.+|.
T Consensus 260 ~i~lg~nn~a~a~r~~~~i~~~D~~~~~a~NnKALcllYlg~l~DAiK~~e~~~~~~P~~~l~es~~~nL~tmyE 334 (366)
T KOG2796|consen 260 FLHLGQNNFAEAHRFFTEILRMDPRNAVANNNKALCLLYLGKLKDALKQLEAMVQQDPRHYLHESVLFNLTTMYE 334 (366)
T ss_pred hheecccchHHHHHHHhhccccCCCchhhhchHHHHHHHHHHHHHHHHHHHHHhccCCccchhhhHHHHHHHHHH
Confidence 7888888888888888888888888888888888888888888888888888888887642 24445554443
No 202
>PF13512 TPR_18: Tetratricopeptide repeat
Probab=98.26 E-value=2.9e-05 Score=68.56 Aligned_cols=88 Identities=20% Similarity=0.165 Sum_probs=62.5
Q ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhccCCCchhchHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCcH--
Q 006120 158 DVRPHFRAGNCLYVLGRYREAKEEYLLALEAAETGGNQWAYLLPQIYVNLGIALEGEGMVLSACEYYRESAILCPTHF-- 235 (660)
Q Consensus 158 ~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~-- 235 (660)
.+..++.-|...+..|+|++|++.++.+....|...- ...+.+.++.++...+++++|+..+++-++++|.++
T Consensus 9 ~~~~ly~~a~~~l~~~~Y~~A~~~le~L~~ryP~g~y-----a~qAqL~l~yayy~~~~y~~A~a~~~rFirLhP~hp~v 83 (142)
T PF13512_consen 9 SPQELYQEAQEALQKGNYEEAIKQLEALDTRYPFGEY-----AEQAQLDLAYAYYKQGDYEEAIAAYDRFIRLHPTHPNV 83 (142)
T ss_pred CHHHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCCCcc-----cHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCCCc
Confidence 3556777777777777888887777777777776433 456777777777777777777777777777777663
Q ss_pred -HHHHHHHHHHHHCCC
Q 006120 236 -RALKLLGSALFGVGE 250 (660)
Q Consensus 236 -~~~~~lg~~~~~~g~ 250 (660)
.+++..|.+++.+..
T Consensus 84 dYa~Y~~gL~~~~~~~ 99 (142)
T PF13512_consen 84 DYAYYMRGLSYYEQDE 99 (142)
T ss_pred cHHHHHHHHHHHHHhh
Confidence 466667766666554
No 203
>KOG1586 consensus Protein required for fusion of vesicles in vesicular transport, alpha-SNAP [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.25 E-value=0.0002 Score=67.54 Aligned_cols=181 Identities=12% Similarity=0.097 Sum_probs=105.6
Q ss_pred cCCHHHHHHHHHHHHHhC------CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhccCCCchhchHHHHHHHHHHHH
Q 006120 138 HQLFKEALVSFKRACELQ------PTDVRPHFRAGNCLYVLGRYREAKEEYLLALEAAETGGNQWAYLLPQIYVNLGIAL 211 (660)
Q Consensus 138 ~g~~~~A~~~~~~al~~~------p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~la~~~ 211 (660)
.+.+++|.++|.++-... ..-..++...|.++.+.|.-.+|-..|-.+.+-.....+.. ....+..-..+|
T Consensus 27 ~~k~eeAadl~~~Aan~yklaK~w~~AG~aflkaA~~h~k~~skhDaat~YveA~~cykk~~~~e---Av~cL~~aieIy 103 (288)
T KOG1586|consen 27 SNKYEEAAELYERAANMYKLAKNWSAAGDAFLKAADLHLKAGSKHDAATTYVEAANCYKKVDPEE---AVNCLEKAIEIY 103 (288)
T ss_pred CcchHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHhcCCchhHHHHHHHHHHHhhccChHH---HHHHHHHHHHHH
Confidence 346777777777765442 11245666667777777776666666655554433321111 345555556667
Q ss_pred HHCCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHC-CCHHHHHHHHHHHHHhCCCC------HHHHHHHHHHHHhCCC
Q 006120 212 EGEGMVLSACEYYRESAILCPTHFRALKLLGSALFGV-GEYRAAVKALEEAIFIKPDY------ADAHCDLASALHAMGE 284 (660)
Q Consensus 212 ~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~-g~~~~A~~~~~~al~~~p~~------~~~~~~la~~~~~~g~ 284 (660)
..+|++.-|-.+. ..+|.+|... .++++|+.+|+++-+..... ...+...+..-...++
T Consensus 104 t~~Grf~~aAk~~--------------~~iaEiyEsdl~d~ekaI~~YE~Aae~yk~ees~ssANKC~lKvA~yaa~leq 169 (288)
T KOG1586|consen 104 TDMGRFTMAAKHH--------------IEIAEIYESDLQDFEKAIAHYEQAAEYYKGEESVSSANKCLLKVAQYAAQLEQ 169 (288)
T ss_pred HhhhHHHHHHhhh--------------hhHHHHHhhhHHHHHHHHHHHHHHHHHHcchhhhhhHHHHHHHHHHHHHHHHH
Confidence 7777766654433 3345555443 66777777777776654322 2334445555566777
Q ss_pred hHHHHHHHHHHHHhCCCCH-------HHHHHHHHHHHHhcCCCHHHHHHHHHHHHcccCC
Q 006120 285 DERAIEVFQKAIDLKPGHV-------DALYNLGGLYMDLGAGETEEAKKALKEALKMTNR 337 (660)
Q Consensus 285 ~~~A~~~~~~al~~~p~~~-------~a~~~La~~~~~~~~g~~~eA~~~~~~al~l~p~ 337 (660)
|.+|+..|++.....-++. +.++.-|.++... .+.-.+...+++..+++|.
T Consensus 170 Y~~Ai~iyeqva~~s~~n~LLKys~KdyflkAgLChl~~--~D~v~a~~ALeky~~~dP~ 227 (288)
T KOG1586|consen 170 YSKAIDIYEQVARSSLDNNLLKYSAKDYFLKAGLCHLCK--ADEVNAQRALEKYQELDPA 227 (288)
T ss_pred HHHHHHHHHHHHHHhccchHHHhHHHHHHHHHHHHhHhc--ccHHHHHHHHHHHHhcCCc
Confidence 7777777777766544432 2334455555554 6777777777777777775
No 204
>KOG3617 consensus WD40 and TPR repeat-containing protein [General function prediction only]
Probab=98.25 E-value=0.00045 Score=75.60 Aligned_cols=214 Identities=17% Similarity=0.135 Sum_probs=142.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhccCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCC
Q 006120 95 EESTHDYAVFVKELGVLRNRADGARSREEAFDGHMAIGRVLYEHQLFKEALVSFKRACELQPTDVRPHFRAGNCLYVLGR 174 (660)
Q Consensus 95 ~~~~~~~g~~~~Al~~l~~a~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~ 174 (660)
+.+..++|..++|+..|++... +-.+-..|...|.+++|.+..+.--.++ .-..+++.|..+...++
T Consensus 807 AvLAieLgMlEeA~~lYr~ckR-----------~DLlNKlyQs~g~w~eA~eiAE~~DRiH--Lr~Tyy~yA~~Lear~D 873 (1416)
T KOG3617|consen 807 AVLAIELGMLEEALILYRQCKR-----------YDLLNKLYQSQGMWSEAFEIAETKDRIH--LRNTYYNYAKYLEARRD 873 (1416)
T ss_pred HHHHHHHhhHHHHHHHHHHHHH-----------HHHHHHHHHhcccHHHHHHHHhhcccee--hhhhHHHHHHHHHhhcc
Confidence 5677888999999998887632 3345567788888888877655432222 23567888888888899
Q ss_pred HHHHHHHHHHHH----------HHhccCCCchh--chHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCcHHHHHHHH
Q 006120 175 YREAKEEYLLAL----------EAAETGGNQWA--YLLPQIYVNLGIALEGEGMVLSACEYYRESAILCPTHFRALKLLG 242 (660)
Q Consensus 175 ~~~A~~~~~~al----------~~~p~~~~~~~--~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg 242 (660)
.+.|+++|+++- .-+|..-.... ......|..-|..+...|+.+.|+.+|..|- -|+.+.
T Consensus 874 i~~AleyyEK~~~hafev~rmL~e~p~~~e~Yv~~~~d~~L~~WWgqYlES~GemdaAl~~Y~~A~--------D~fs~V 945 (1416)
T KOG3617|consen 874 IEAALEYYEKAGVHAFEVFRMLKEYPKQIEQYVRRKRDESLYSWWGQYLESVGEMDAALSFYSSAK--------DYFSMV 945 (1416)
T ss_pred HHHHHHHHHhcCChHHHHHHHHHhChHHHHHHHHhccchHHHHHHHHHHhcccchHHHHHHHHHhh--------hhhhhe
Confidence 999999988752 22222100000 0034566677888888999999999998753 356677
Q ss_pred HHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhCCChHHHHHHHHHHHHh------CC--CCHHHHHH------
Q 006120 243 SALFGVGEYRAAVKALEEAIFIKPDYADAHCDLASALHAMGEDERAIEVFQKAIDL------KP--GHVDALYN------ 308 (660)
Q Consensus 243 ~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~------~p--~~~~a~~~------ 308 (660)
.+..-+|+.++|..+.++ ..+..+.+.+|+.|...|+..+|+..|.+|... .. +..+-+.+
T Consensus 946 rI~C~qGk~~kAa~iA~e-----sgd~AAcYhlaR~YEn~g~v~~Av~FfTrAqafsnAIRlcKEnd~~d~L~nlal~s~ 1020 (1416)
T KOG3617|consen 946 RIKCIQGKTDKAARIAEE-----SGDKAACYHLARMYENDGDVVKAVKFFTRAQAFSNAIRLCKENDMKDRLANLALMSG 1020 (1416)
T ss_pred eeEeeccCchHHHHHHHh-----cccHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHhhcC
Confidence 777778888888765554 456778888999999999999999888876543 11 11222222
Q ss_pred ------HHHHHHHhcCCCHHHHHHHHHHHHccc
Q 006120 309 ------LGGLYMDLGAGETEEAKKALKEALKMT 335 (660)
Q Consensus 309 ------La~~~~~~~~g~~~eA~~~~~~al~l~ 335 (660)
.+..|.+.+ |+.+.|...|.+|=-+.
T Consensus 1021 ~~d~v~aArYyEe~g-~~~~~AVmLYHkAGm~~ 1052 (1416)
T KOG3617|consen 1021 GSDLVSAARYYEELG-GYAHKAVMLYHKAGMIG 1052 (1416)
T ss_pred chhHHHHHHHHHHcc-hhhhHHHHHHHhhcchH
Confidence 334455553 47777777777654443
No 205
>KOG1585 consensus Protein required for fusion of vesicles in vesicular transport, gamma-SNAP [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.23 E-value=0.00052 Score=65.20 Aligned_cols=175 Identities=11% Similarity=0.072 Sum_probs=137.7
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhccCCCchhchHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh-----CCC
Q 006120 159 VRPHFRAGNCLYVLGRYREAKEEYLLALEAAETGGNQWAYLLPQIYVNLGIALEGEGMVLSACEYYRESAIL-----CPT 233 (660)
Q Consensus 159 ~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~-----~p~ 233 (660)
+..+..-+.+|....+|++|...+.++.+-..++...++ .+..+-..+.+...+..+.++..+++++..+ .|+
T Consensus 31 as~yekAAvafRnAk~feKakdcLlkA~~~yEnnrslfh--AAKayEqaamLake~~klsEvvdl~eKAs~lY~E~Gspd 108 (308)
T KOG1585|consen 31 ASLYEKAAVAFRNAKKFEKAKDCLLKASKGYENNRSLFH--AAKAYEQAAMLAKELSKLSEVVDLYEKASELYVECGSPD 108 (308)
T ss_pred HHHHHHHHHHHHhhccHHHHHHHHHHHHHHHHhcccHHH--HHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHhCCcc
Confidence 455666788899999999999999999998888877777 7888899999999999999999999999876 355
Q ss_pred cHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCC------HHHHHHHHHHHHhCCChHHHHHHHHHHHHh------CCC
Q 006120 234 HFRALKLLGSALFGVGEYRAAVKALEEAIFIKPDY------ADAHCDLASALHAMGEDERAIEVFQKAIDL------KPG 301 (660)
Q Consensus 234 ~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~------~~~~~~la~~~~~~g~~~~A~~~~~~al~~------~p~ 301 (660)
.+..-...+--..+.-++++|+++|++++.+-... .+.+-..++++.+..++++|-..+.+-... .++
T Consensus 109 tAAmaleKAak~lenv~Pd~AlqlYqralavve~~dr~~ma~el~gk~sr~lVrl~kf~Eaa~a~lKe~~~~~~~~~y~~ 188 (308)
T KOG1585|consen 109 TAAMALEKAAKALENVKPDDALQLYQRALAVVEEDDRDQMAFELYGKCSRVLVRLEKFTEAATAFLKEGVAADKCDAYNS 188 (308)
T ss_pred hHHHHHHHHHHHhhcCCHHHHHHHHHHHHHHHhccchHHHHHHHHHHhhhHhhhhHHhhHHHHHHHHhhhHHHHHhhccc
Confidence 55555555666677889999999999999885433 345667888999999999998888775443 233
Q ss_pred CHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHcccCC
Q 006120 302 HVDALYNLGGLYMDLGAGETEEAKKALKEALKMTNR 337 (660)
Q Consensus 302 ~~~a~~~La~~~~~~~~g~~~eA~~~~~~al~l~p~ 337 (660)
....+.....+|... .++..|...++..-++...
T Consensus 189 ~~k~~va~ilv~L~~--~Dyv~aekc~r~~~qip~f 222 (308)
T KOG1585|consen 189 QCKAYVAAILVYLYA--HDYVQAEKCYRDCSQIPAF 222 (308)
T ss_pred HHHHHHHHHHHHhhH--HHHHHHHHHhcchhcCccc
Confidence 334555555566655 7999999999998887643
No 206
>PLN03098 LPA1 LOW PSII ACCUMULATION1; Provisional
Probab=98.23 E-value=4.9e-06 Score=86.77 Aligned_cols=70 Identities=20% Similarity=0.220 Sum_probs=65.6
Q ss_pred hCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHH---HHHHHHHHHhCCChHHHHHHHHHHHHhC
Q 006120 230 LCPTHFRALKLLGSALFGVGEYRAAVKALEEAIFIKPDYADA---HCDLASALHAMGEDERAIEVFQKAIDLK 299 (660)
Q Consensus 230 ~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~---~~~la~~~~~~g~~~~A~~~~~~al~~~ 299 (660)
.+|+++.+++++|.+|...|+|++|+..|+++++++|++..+ |+|+|.+|..+|++++|+.++++|+++.
T Consensus 70 ~dP~~a~a~~NLG~AL~~lGryeEAIa~f~rALeL~Pd~aeA~~A~yNLAcaya~LGr~dEAla~LrrALels 142 (453)
T PLN03098 70 ADVKTAEDAVNLGLSLFSKGRVKDALAQFETALELNPNPDEAQAAYYNKACCHAYREEGKKAADCLRTALRDY 142 (453)
T ss_pred CCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhc
Confidence 478889999999999999999999999999999999999854 9999999999999999999999999973
No 207
>PF13424 TPR_12: Tetratricopeptide repeat; PDB: 3RO2_A 3Q15_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 4A1S_B 3CEQ_B 3EDT_H ....
Probab=98.21 E-value=4.1e-06 Score=67.20 Aligned_cols=69 Identities=29% Similarity=0.432 Sum_probs=58.7
Q ss_pred HHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC---C----CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhc
Q 006120 122 EEAFDGHMAIGRVLYEHQLFKEALVSFKRACELQ---P----TDVRPHFRAGNCLYVLGRYREAKEEYLLALEAAE 190 (660)
Q Consensus 122 ~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~---p----~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p 190 (660)
+..+.++.++|.++..+|++++|+.+|++++++. + ..+.++.++|.++...|++++|++++++++++..
T Consensus 2 ~~~a~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~al~i~~ 77 (78)
T PF13424_consen 2 PDTANAYNNLARVYRELGRYDEALDYYEKALDIEEQLGDDHPDTANTLNNLGECYYRLGDYEEALEYYQKALDIFE 77 (78)
T ss_dssp HHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHTTTHHHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhhc
Confidence 4567889999999999999999999999999762 2 2356889999999999999999999999998753
No 208
>KOG3617 consensus WD40 and TPR repeat-containing protein [General function prediction only]
Probab=98.19 E-value=0.00047 Score=75.47 Aligned_cols=230 Identities=17% Similarity=0.146 Sum_probs=148.7
Q ss_pred HHHHHHHHHHHHHHHhhccCcH--HHHHHHHHHHHHHHHcCCHHHHHHHHHHHH----------HhCCC----------C
Q 006120 101 YAVFVKELGVLRNRADGARSRE--EAFDGHMAIGRVLYEHQLFKEALVSFKRAC----------ELQPT----------D 158 (660)
Q Consensus 101 ~g~~~~Al~~l~~a~~~~~~~~--~~~~~~~~lg~~~~~~g~~~~A~~~~~~al----------~~~p~----------~ 158 (660)
++++.+++..+.++.+.....+ ..-..|++.|..+...++.+.|+++|+++- ..+|. +
T Consensus 832 lNKlyQs~g~w~eA~eiAE~~DRiHLr~Tyy~yA~~Lear~Di~~AleyyEK~~~hafev~rmL~e~p~~~e~Yv~~~~d 911 (1416)
T KOG3617|consen 832 LNKLYQSQGMWSEAFEIAETKDRIHLRNTYYNYAKYLEARRDIEAALEYYEKAGVHAFEVFRMLKEYPKQIEQYVRRKRD 911 (1416)
T ss_pred HHHHHHhcccHHHHHHHHhhccceehhhhHHHHHHHHHhhccHHHHHHHHHhcCChHHHHHHHHHhChHHHHHHHHhccc
Confidence 3444444444444444443221 122568899999999999999999998752 22332 4
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhccCCCch-------------hchHHHHHHHHHHHHHHCCCHHHHHHHHH
Q 006120 159 VRPHFRAGNCLYVLGRYREAKEEYLLALEAAETGGNQW-------------AYLLPQIYVNLGIALEGEGMVLSACEYYR 225 (660)
Q Consensus 159 ~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~-------------~~~~~~~~~~la~~~~~~g~~~~A~~~~~ 225 (660)
...|..-|..+...|+.+.|+.+|..|-.......... ..-...+.+.+|..|...|+..+|+..|.
T Consensus 912 ~~L~~WWgqYlES~GemdaAl~~Y~~A~D~fs~VrI~C~qGk~~kAa~iA~esgd~AAcYhlaR~YEn~g~v~~Av~FfT 991 (1416)
T KOG3617|consen 912 ESLYSWWGQYLESVGEMDAALSFYSSAKDYFSMVRIKCIQGKTDKAARIAEESGDKAACYHLARMYENDGDVVKAVKFFT 991 (1416)
T ss_pred hHHHHHHHHHHhcccchHHHHHHHHHhhhhhhheeeEeeccCchHHHHHHHhcccHHHHHHHHHHhhhhHHHHHHHHHHH
Confidence 56677788899999999999999988765432110000 00034678899999999999999999998
Q ss_pred HHHH------hCCCc--HHHH------------HHHHHHHHHCC-CHHHHHHHHHHH------HHh--------------
Q 006120 226 ESAI------LCPTH--FRAL------------KLLGSALFGVG-EYRAAVKALEEA------IFI-------------- 264 (660)
Q Consensus 226 ~al~------~~p~~--~~~~------------~~lg~~~~~~g-~~~~A~~~~~~a------l~~-------------- 264 (660)
+|-. +...+ .+-+ ..-+..|...| ....|+.+|.+| +++
T Consensus 992 rAqafsnAIRlcKEnd~~d~L~nlal~s~~~d~v~aArYyEe~g~~~~~AVmLYHkAGm~~kALelAF~tqQf~aL~lIa 1071 (1416)
T KOG3617|consen 992 RAQAFSNAIRLCKENDMKDRLANLALMSGGSDLVSAARYYEELGGYAHKAVMLYHKAGMIGKALELAFRTQQFSALDLIA 1071 (1416)
T ss_pred HHHHHHHHHHHHHhcCHHHHHHHHHhhcCchhHHHHHHHHHHcchhhhHHHHHHHhhcchHHHHHHHHhhcccHHHHHHH
Confidence 8743 22211 1111 12233444444 555666655542 221
Q ss_pred ---CC-CCHHHHHHHHHHHHhCCChHHHHHHHHH------HHHh----------------CCCC---------HHHHHHH
Q 006120 265 ---KP-DYADAHCDLASALHAMGEDERAIEVFQK------AIDL----------------KPGH---------VDALYNL 309 (660)
Q Consensus 265 ---~p-~~~~~~~~la~~~~~~g~~~~A~~~~~~------al~~----------------~p~~---------~~a~~~L 309 (660)
+| .++..+..-+..+....+|++|...+-. |+.+ .|.. ...+..+
T Consensus 1072 ~DLd~~sDp~ll~RcadFF~~~~qyekAV~lL~~ar~~~~AlqlC~~~nv~vtee~aE~mTp~Kd~~~~e~~R~~vLeqv 1151 (1416)
T KOG3617|consen 1072 KDLDAGSDPKLLRRCADFFENNQQYEKAVNLLCLAREFSGALQLCKNRNVRVTEEFAELMTPTKDDMPNEQERKQVLEQV 1151 (1416)
T ss_pred HhcCCCCCHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHhcCCCchhHHHHHhcCcCcCCCccHHHHHHHHHHH
Confidence 23 4577888888899999999999876544 4443 1211 3478889
Q ss_pred HHHHHHhcCCCHHHHHHHHHHHH
Q 006120 310 GGLYMDLGAGETEEAKKALKEAL 332 (660)
Q Consensus 310 a~~~~~~~~g~~~eA~~~~~~al 332 (660)
|.+..++ |.|..|.+-|.+|=
T Consensus 1152 ae~c~qQ--G~Yh~AtKKfTQAG 1172 (1416)
T KOG3617|consen 1152 AELCLQQ--GAYHAATKKFTQAG 1172 (1416)
T ss_pred HHHHHhc--cchHHHHHHHhhhh
Confidence 9999988 99999998888763
No 209
>PF00569 ZZ: Zinc finger, ZZ type; InterPro: IPR000433 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. This entry represents ZZ-type zinc finger domains, named because of their ability to bind two zinc ions []. These domains contain 4-6 Cys residues that participate in zinc binding (plus additional Ser/His residues), including a Cys-X2-Cys motif found in other zinc finger domains. These zinc fingers are thought to be involved in protein-protein interactions. The structure of the ZZ domain shows that it belongs to the family of cross-brace zinc finger motifs that include the PHD, RING, and FYVE domains []. ZZ-type zinc finger domains are found in: Transcription factors P300 and CBP. Plant proteins involved in light responses, such as Hrb1. E3 ubiquitin ligases MEX and MIB2 (6.3.2 from EC). Dystrophin and its homologues. Single copies of the ZZ zinc finger occur in the transcriptional adaptor/coactivator proteins P300, in cAMP response element-binding protein (CREB)-binding protein (CBP) and ADA2. CBP provides several binding sites for transcriptional coactivators. The site of interaction with the tumour suppressor protein p53 and the oncoprotein E1A with CBP/P300 is a Cys-rich region that incorporates two zinc-binding motifs: ZZ-type and TAZ2-type. The ZZ-type zinc finger of CBP contains two twisted anti-parallel beta-sheets and a short alpha-helix, and binds two zinc ions []. One zinc ion is coordinated by four cysteine residues via 2 Cys-X2-Cys motifs, and the third zinc ion via a third Cys-X-Cys motif and a His-X-His motif. The first zinc cluster is strictly conserved, whereas the second zinc cluster displays variability in the position of the two His residues. In Arabidopsis thaliana (Mouse-ear cress), the hypersensitive to red and blue 1 (Hrb1) protein, which regulating both red and blue light responses, contains a ZZ-type zinc finger domain []. ZZ-type zinc finger domains have also been identified in the testis-specific E3 ubiquitin ligase MEX that promotes death receptor-induced apoptosis []. MEX has four putative zinc finger domains: one ZZ-type, one SWIM-type and two RING-type. The region containing the ZZ-type and RING-type zinc fingers is required for interaction with UbcH5a and MEX self-association, whereas the SWIM domain was critical for MEX ubiquitination. In addition, the Cys-rich domains of dystrophin, utrophin and an 87kDa post-synaptic protein contain a ZZ-type zinc finger with high sequence identity to P300/CBP ZZ-type zinc fingers. In dystrophin and utrophin, the ZZ-type zinc finger lies between a WW domain (flanked by and EF hand) and the C-terminal coiled-coil domain. Dystrophin is thought to act as a link between the actin cytoskeleton and the extracellular matrix, and perturbations of the dystrophin-associated complex, for example, between dystrophin and the transmembrane glycoprotein beta-dystroglycan, may lead to muscular dystrophy. Dystrophin and its autosomal homologue utrophin interact with beta-dystroglycan via their C-terminal regions, which are comprised of a WW domain, an EF hand domain and a ZZ-type zinc finger domain []. The WW domain is the primary site of interaction between dystrophin or utrophin and dystroglycan, while the EF hand and ZZ-type zinc finger domains stabilise and strengthen this interaction. More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; GO: 0008270 zinc ion binding; PDB: 1TOT_A 2DIP_A 2FC7_A 2E5R_A.
Probab=98.12 E-value=4.9e-07 Score=63.76 Aligned_cols=42 Identities=33% Similarity=0.806 Sum_probs=31.4
Q ss_pred CCCcccccccc-ccccccccccc-cccccccccccCCCCCCCCc
Q 006120 588 HGRHVCSVCRY-PIIGSRFKEMK-SHFSLCSQCYSEGKVPPTFK 629 (660)
Q Consensus 588 ~~~~~~~~~~~-~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~ 629 (660)
|.+++|..|+. ||+|.||+=+. .+|.||..||+.|+++..-+
T Consensus 2 h~~~~C~~C~~~~i~g~Ry~C~~C~d~dLC~~C~~~g~~~~~H~ 45 (46)
T PF00569_consen 2 HHGYTCDGCGTDPIIGVRYHCLVCPDYDLCEDCFSKGRHSHNHK 45 (46)
T ss_dssp CSSCE-SSS-SSSEESSEEEESSSSS-EEEHHHHHH--H-SSSS
T ss_pred CCCeECcCCCCCcCcCCeEECCCCCCCchhhHHHhCcCCCCCcC
Confidence 77899999999 99999999764 57999999999999987643
No 210
>KOG2610 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.08 E-value=0.00036 Score=69.09 Aligned_cols=164 Identities=13% Similarity=0.035 Sum_probs=135.5
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH-hccCCCchhchHHHHHHH
Q 006120 128 HMAIGRVLYEHQLFKEALVSFKRACELQPTDVRPHFRAGNCLYVLGRYREAKEEYLLALEA-AETGGNQWAYLLPQIYVN 206 (660)
Q Consensus 128 ~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~-~p~~~~~~~~~~~~~~~~ 206 (660)
....+.+.+..|++.+|.....+.++..|.+.-++..--.++..+|+...-...+++.+.. +++.+- ...+.-.
T Consensus 106 ~h~~aai~~~~g~~h~a~~~wdklL~d~PtDlla~kfsh~a~fy~G~~~~~k~ai~kIip~wn~dlp~-----~sYv~Gm 180 (491)
T KOG2610|consen 106 RHAKAAILWGRGKHHEAAIEWDKLLDDYPTDLLAVKFSHDAHFYNGNQIGKKNAIEKIIPKWNADLPC-----YSYVHGM 180 (491)
T ss_pred hhhhHHHhhccccccHHHHHHHHHHHhCchhhhhhhhhhhHHHhccchhhhhhHHHHhccccCCCCcH-----HHHHHHH
Confidence 3445667788999999999999999999999988888888999999999999999998876 444211 4667777
Q ss_pred HHHHHHHCCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCC----HHHHHHHHHHHHhC
Q 006120 207 LGIALEGEGMVLSACEYYRESAILCPTHFRALKLLGSALFGVGEYRAAVKALEEAIFIKPDY----ADAHCDLASALHAM 282 (660)
Q Consensus 207 la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~----~~~~~~la~~~~~~ 282 (660)
++..+...|-|++|.+..+++++++|.+.-+...++.++...|++.++.+...+.-..-... ..-|..-|.++.+-
T Consensus 181 yaFgL~E~g~y~dAEk~A~ralqiN~~D~Wa~Ha~aHVlem~~r~Keg~eFM~~ted~Wr~s~mlasHNyWH~Al~~iE~ 260 (491)
T KOG2610|consen 181 YAFGLEECGIYDDAEKQADRALQINRFDCWASHAKAHVLEMNGRHKEGKEFMYKTEDDWRQSWMLASHNYWHTALFHIEG 260 (491)
T ss_pred HHhhHHHhccchhHHHHHHhhccCCCcchHHHHHHHHHHHhcchhhhHHHHHHhcccchhhhhHHHhhhhHHHHHhhhcc
Confidence 88889999999999999999999999999999999999999999999999888754432211 12345568888889
Q ss_pred CChHHHHHHHHHHH
Q 006120 283 GEDERAIEVFQKAI 296 (660)
Q Consensus 283 g~~~~A~~~~~~al 296 (660)
+.|+.|++.|.+-+
T Consensus 261 aeye~aleIyD~ei 274 (491)
T KOG2610|consen 261 AEYEKALEIYDREI 274 (491)
T ss_pred cchhHHHHHHHHHH
Confidence 99999999998755
No 211
>KOG2053 consensus Mitochondrial inheritance and actin cytoskeleton organization protein [Cytoskeleton]
Probab=98.08 E-value=0.0036 Score=69.85 Aligned_cols=226 Identities=16% Similarity=0.010 Sum_probs=160.5
Q ss_pred HHHHHHHHHHHHHHHHHhhccCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHH
Q 006120 99 HDYAVFVKELGVLRNRADGARSREEAFDGHMAIGRVLYEHQLFKEALVSFKRACELQPTDVRPHFRAGNCLYVLGRYREA 178 (660)
Q Consensus 99 ~~~g~~~~Al~~l~~a~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A 178 (660)
.+.++|.+|+....+.+++.|+.+ -+....|.++.+.|+.++|..+++..-...+++...+..+-.+|..++++++|
T Consensus 20 ld~~qfkkal~~~~kllkk~Pn~~---~a~vLkaLsl~r~gk~~ea~~~Le~~~~~~~~D~~tLq~l~~~y~d~~~~d~~ 96 (932)
T KOG2053|consen 20 LDSSQFKKALAKLGKLLKKHPNAL---YAKVLKALSLFRLGKGDEALKLLEALYGLKGTDDLTLQFLQNVYRDLGKLDEA 96 (932)
T ss_pred hhhHHHHHHHHHHHHHHHHCCCcH---HHHHHHHHHHHHhcCchhHHHHHhhhccCCCCchHHHHHHHHHHHHHhhhhHH
Confidence 467899999999999999888876 66678899999999999999888877777788888999999999999999999
Q ss_pred HHHHHHHHHHhccCCCchhchHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCcHHH-HHHHHHHHHHCCCH------
Q 006120 179 KEEYLLALEAAETGGNQWAYLLPQIYVNLGIALEGEGMVLSACEYYRESAILCPTHFRA-LKLLGSALFGVGEY------ 251 (660)
Q Consensus 179 ~~~~~~al~~~p~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~-~~~lg~~~~~~g~~------ 251 (660)
..+|++++..+|. ......+-.+|.+.+.|.+-.+.--+..+..|+.+.. |..+..++......
T Consensus 97 ~~~Ye~~~~~~P~---------eell~~lFmayvR~~~yk~qQkaa~~LyK~~pk~~yyfWsV~Slilqs~~~~~~~~~~ 167 (932)
T KOG2053|consen 97 VHLYERANQKYPS---------EELLYHLFMAYVREKSYKKQQKAALQLYKNFPKRAYYFWSVISLILQSIFSENELLDP 167 (932)
T ss_pred HHHHHHHHhhCCc---------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCcccchHHHHHHHHHHhccCCcccccc
Confidence 9999999999997 2444555566777777766555555555677887654 44444444433332
Q ss_pred ---HHHHHHHHHHHHhC-CCCHHH-HHHHHHHHHhCCChHHHHHHHHH-HHHhCC-CCHHHHHHHHHHHHHhcCCCHHHH
Q 006120 252 ---RAAVKALEEAIFIK-PDYADA-HCDLASALHAMGEDERAIEVFQK-AIDLKP-GHVDALYNLGGLYMDLGAGETEEA 324 (660)
Q Consensus 252 ---~~A~~~~~~al~~~-p~~~~~-~~~la~~~~~~g~~~~A~~~~~~-al~~~p-~~~~a~~~La~~~~~~~~g~~~eA 324 (660)
.-|....++.++.. +-...+ ....-.++..+|++++|...+.. ..+..+ .+...-......+... +++.+-
T Consensus 168 i~l~LA~~m~~~~l~~~gk~~s~aE~~Lyl~iL~~~~k~~eal~~l~~~la~~l~~~~~~l~~~~~dllk~l--~~w~~l 245 (932)
T KOG2053|consen 168 ILLALAEKMVQKLLEKKGKIESEAEIILYLLILELQGKYQEALEFLAITLAEKLTSANLYLENKKLDLLKLL--NRWQEL 245 (932)
T ss_pred hhHHHHHHHHHHHhccCCccchHHHHHHHHHHHHhcccHHHHHHHHHHHHHHhccccchHHHHHHHHHHHHh--cChHHH
Confidence 23555666666655 222111 12233567789999999999943 333333 3333334445555566 788888
Q ss_pred HHHHHHHHcccCCh
Q 006120 325 KKALKEALKMTNRV 338 (660)
Q Consensus 325 ~~~~~~al~l~p~~ 338 (660)
.+...+.+.-.++.
T Consensus 246 ~~l~~~Ll~k~~Dd 259 (932)
T KOG2053|consen 246 FELSSRLLEKGNDD 259 (932)
T ss_pred HHHHHHHHHhCCcc
Confidence 88888888777664
No 212
>PF06552 TOM20_plant: Plant specific mitochondrial import receptor subunit TOM20; InterPro: IPR010547 This family consists of several plant specific mitochondrial import receptor subunit TOM20 (translocase of outer membrane 20 kDa subunit) proteins. Most mitochondrial proteins are encoded by the nuclear genome, and are synthesised in the cytosol. TOM20 is a general import receptor that binds to mitochondrial pre-sequences in the early step of protein import into the mitochondria [].; GO: 0045040 protein import into mitochondrial outer membrane, 0005742 mitochondrial outer membrane translocase complex; PDB: 1ZU2_A.
Probab=98.06 E-value=3.6e-05 Score=70.07 Aligned_cols=91 Identities=30% Similarity=0.341 Sum_probs=51.8
Q ss_pred HHHHHHHHHHHHhCCCCHHHHHHHHHHHHhCC----------ChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhc----
Q 006120 252 RAAVKALEEAIFIKPDYADAHCDLASALHAMG----------EDERAIEVFQKAIDLKPGHVDALYNLGGLYMDLG---- 317 (660)
Q Consensus 252 ~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g----------~~~~A~~~~~~al~~~p~~~~a~~~La~~~~~~~---- 317 (660)
+.|.+.++.....+|.+++.+++-|.++..+. -+++|+.-|++|+.++|+..++++++|.+|..++
T Consensus 8 E~ark~aea~y~~nP~DadnL~~WG~ALLELAqfk~g~es~~miedAisK~eeAL~I~P~~hdAlw~lGnA~ts~A~l~~ 87 (186)
T PF06552_consen 8 EHARKKAEAAYAKNPLDADNLTNWGGALLELAQFKQGPESKKMIEDAISKFEEALKINPNKHDALWCLGNAYTSLAFLTP 87 (186)
T ss_dssp HHHHHHHHHHHHH-TT-HHHHHHHHHHHHHHHHHS-HHHHHHHHHHHHHHHHHHHHH-TT-HHHHHHHHHHHHHHHHH--
T ss_pred HHHHHHHHHHHHhCcHhHHHHHHHHHHHHHHHhccCcchHHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHHHhhcC
Confidence 44555555555555555555555555544332 2345666666666667776666666666665542
Q ss_pred -----CCCHHHHHHHHHHHHcccCChhHHH
Q 006120 318 -----AGETEEAKKALKEALKMTNRVELHD 342 (660)
Q Consensus 318 -----~g~~~eA~~~~~~al~l~p~~~~~~ 342 (660)
...+++|..+|++|.+.+|+.+.+.
T Consensus 88 d~~~A~~~F~kA~~~FqkAv~~~P~ne~Y~ 117 (186)
T PF06552_consen 88 DTAEAEEYFEKATEYFQKAVDEDPNNELYR 117 (186)
T ss_dssp -HHHHHHHHHHHHHHHHHHHHH-TT-HHHH
T ss_pred ChHHHHHHHHHHHHHHHHHHhcCCCcHHHH
Confidence 1237788888888999998876643
No 213
>PF04184 ST7: ST7 protein; InterPro: IPR007311 The ST7 (for suppression of tumorigenicity 7) protein is thought to be a tumour suppressor gene. The molecular function of this protein is uncertain.
Probab=98.02 E-value=0.00044 Score=72.43 Aligned_cols=130 Identities=17% Similarity=0.126 Sum_probs=77.3
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhccCCCch------------
Q 006120 129 MAIGRVLYEHQLFKEALVSFKRACELQPTDVRPHFRAGNCLYVLGRYREAKEEYLLALEAAETGGNQW------------ 196 (660)
Q Consensus 129 ~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~------------ 196 (660)
..+.....+..+.++-++.-++|++++|+.+.++..||.- ...-..+|..+++++++..+..-...
T Consensus 172 q~IMq~AWRERnp~aRIkaA~eALei~pdCAdAYILLAEE--eA~Ti~Eae~l~rqAvkAgE~~lg~s~~~~~~g~~~e~ 249 (539)
T PF04184_consen 172 QEIMQKAWRERNPQARIKAAKEALEINPDCADAYILLAEE--EASTIVEAEELLRQAVKAGEASLGKSQFLQHHGHFWEA 249 (539)
T ss_pred HHHHHHHHhcCCHHHHHHHHHHHHHhhhhhhHHHhhcccc--cccCHHHHHHHHHHHHHHHHHhhchhhhhhcccchhhh
Confidence 3455667788899999999999999999999999888752 23346788888888887654321100
Q ss_pred -----hchHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCC--cHHHHHHHHHHHHHCCCHHHHHHHHHH
Q 006120 197 -----AYLLPQIYVNLGIALEGEGMVLSACEYYRESAILCPT--HFRALKLLGSALFGVGEYRAAVKALEE 260 (660)
Q Consensus 197 -----~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~--~~~~~~~lg~~~~~~g~~~~A~~~~~~ 260 (660)
......+...+|.+..++|+.++|++.++..++..|. +..+..+|..++...+.|.++...+.+
T Consensus 250 ~~~Rdt~~~~y~KrRLAmCarklGr~~EAIk~~rdLlke~p~~~~l~IrenLie~LLelq~Yad~q~lL~k 320 (539)
T PF04184_consen 250 WHRRDTNVLVYAKRRLAMCARKLGRLREAIKMFRDLLKEFPNLDNLNIRENLIEALLELQAYADVQALLAK 320 (539)
T ss_pred hhccccchhhhhHHHHHHHHHHhCChHHHHHHHHHHHhhCCccchhhHHHHHHHHHHhcCCHHHHHHHHHH
Confidence 0001233344455555555555555555555544432 233444555555555555555444444
No 214
>PF06552 TOM20_plant: Plant specific mitochondrial import receptor subunit TOM20; InterPro: IPR010547 This family consists of several plant specific mitochondrial import receptor subunit TOM20 (translocase of outer membrane 20 kDa subunit) proteins. Most mitochondrial proteins are encoded by the nuclear genome, and are synthesised in the cytosol. TOM20 is a general import receptor that binds to mitochondrial pre-sequences in the early step of protein import into the mitochondria [].; GO: 0045040 protein import into mitochondrial outer membrane, 0005742 mitochondrial outer membrane translocase complex; PDB: 1ZU2_A.
Probab=98.02 E-value=4.4e-05 Score=69.54 Aligned_cols=93 Identities=28% Similarity=0.263 Sum_probs=71.4
Q ss_pred HHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHCC----------CHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhCCC--
Q 006120 217 VLSACEYYRESAILCPTHFRALKLLGSALFGVG----------EYRAAVKALEEAIFIKPDYADAHCDLASALHAMGE-- 284 (660)
Q Consensus 217 ~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g----------~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~-- 284 (660)
++.|.+.++.....+|.+++.+++-|.++..+. -+++|+.-|++||.++|+...++.++|.+|..++.
T Consensus 7 FE~ark~aea~y~~nP~DadnL~~WG~ALLELAqfk~g~es~~miedAisK~eeAL~I~P~~hdAlw~lGnA~ts~A~l~ 86 (186)
T PF06552_consen 7 FEHARKKAEAAYAKNPLDADNLTNWGGALLELAQFKQGPESKKMIEDAISKFEEALKINPNKHDALWCLGNAYTSLAFLT 86 (186)
T ss_dssp HHHHHHHHHHHHHH-TT-HHHHHHHHHHHHHHHHHS-HHHHHHHHHHHHHHHHHHHHH-TT-HHHHHHHHHHHHHHHHH-
T ss_pred HHHHHHHHHHHHHhCcHhHHHHHHHHHHHHHHHhccCcchHHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHHHhhc
Confidence 678889999999999999999999988887653 34678888899999999999999999999987654
Q ss_pred ---------hHHHHHHHHHHHHhCCCCHHHHHHH
Q 006120 285 ---------DERAIEVFQKAIDLKPGHVDALYNL 309 (660)
Q Consensus 285 ---------~~~A~~~~~~al~~~p~~~~a~~~L 309 (660)
+++|..+|++|...+|++......|
T Consensus 87 ~d~~~A~~~F~kA~~~FqkAv~~~P~ne~Y~ksL 120 (186)
T PF06552_consen 87 PDTAEAEEYFEKATEYFQKAVDEDPNNELYRKSL 120 (186)
T ss_dssp --HHHHHHHHHHHHHHHHHHHHH-TT-HHHHHHH
T ss_pred CChHHHHHHHHHHHHHHHHHHhcCCCcHHHHHHH
Confidence 6788888889999999875443333
No 215
>KOG2471 consensus TPR repeat-containing protein [General function prediction only]
Probab=97.92 E-value=0.00052 Score=71.16 Aligned_cols=240 Identities=15% Similarity=0.100 Sum_probs=170.5
Q ss_pred HHHhHHHHHHHHHHHHHHHHHHHHHHHHHhh-ccC---cHHH--HHHHHHHHHHHHHcCCHHHHHHHHHHHHHh------
Q 006120 87 ISEKRVFWEESTHDYAVFVKELGVLRNRADG-ARS---REEA--FDGHMAIGRVLYEHQLFKEALVSFKRACEL------ 154 (660)
Q Consensus 87 ~~~~~~~l~~~~~~~g~~~~Al~~l~~a~~~-~~~---~~~~--~~~~~~lg~~~~~~g~~~~A~~~~~~al~~------ 154 (660)
............+..|++.+|.+.+...--. .+. .++. -..|.++|.++++.|.|..+..+|.++++.
T Consensus 239 s~~~l~LKsq~eY~~gn~~kA~KlL~~sni~~~~g~~~T~q~~~cif~NNlGcIh~~~~~y~~~~~~F~kAL~N~c~qL~ 318 (696)
T KOG2471|consen 239 SSMALLLKSQLEYAHGNHPKAMKLLLVSNIHKEAGGTITPQLSSCIFNNNLGCIHYQLGCYQASSVLFLKALRNSCSQLR 318 (696)
T ss_pred CcHHHHHHHHHHHHhcchHHHHHHHHhcccccccCccccchhhhheeecCcceEeeehhhHHHHHHHHHHHHHHHHHHHh
Confidence 3455556677888889999999887653211 111 1222 245789999999999999999999999961
Q ss_pred ---CC---------CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhccCCCchhchHHHHHHHHHHHHHHCC-------
Q 006120 155 ---QP---------TDVRPHFRAGNCLYVLGRYREAKEEYLLALEAAETGGNQWAYLLPQIYVNLGIALEGEG------- 215 (660)
Q Consensus 155 ---~p---------~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~la~~~~~~g------- 215 (660)
.| ...++.++.|..|...|++-.|.++|.+++..... .+..|..++.+++...
T Consensus 319 ~g~~~~~~~tls~nks~eilYNcG~~~Lh~grPl~AfqCf~~av~vfh~--------nPrlWLRlAEcCima~~~~l~ee 390 (696)
T KOG2471|consen 319 NGLKPAKTFTLSQNKSMEILYNCGLLYLHSGRPLLAFQCFQKAVHVFHR--------NPRLWLRLAECCIMALQKGLLEE 390 (696)
T ss_pred ccCCCCcceehhcccchhhHHhhhHHHHhcCCcHHHHHHHHHHHHHHhc--------CcHHHHHHHHHHHHHhhhhhhhh
Confidence 11 23578999999999999999999999999999887 6778888887765311
Q ss_pred ------------------------------------------CHHHHHHHHHHHHHhC----------------------
Q 006120 216 ------------------------------------------MVLSACEYYRESAILC---------------------- 231 (660)
Q Consensus 216 ------------------------------------------~~~~A~~~~~~al~~~---------------------- 231 (660)
..+-|.-+++.++-+-
T Consensus 391 ~~~s~s~~~i~~~vig~g~rr~~m~~~nt~~~~~qS~~~p~~slefA~vCLrnal~Ll~e~q~~~~~~~~a~ns~~~g~~ 470 (696)
T KOG2471|consen 391 GNSSLSRSEIRVHVIGKGNRRQLMIEENTYVELAQSNQLPKLSLEFARVCLRNALYLLNEKQDLGSILSVAMNSTKEGSS 470 (696)
T ss_pred ccCCcccccceeeeecccchhheeecccceeccccccCCCccccHHHHHHHHhhhhcCchhhcchhhhhhhccccccCCC
Confidence 1123444555554221
Q ss_pred -----------------------C-Cc-----------HHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHH
Q 006120 232 -----------------------P-TH-----------FRALKLLGSALFGVGEYRAAVKALEEAIFIKPDYADAHCDLA 276 (660)
Q Consensus 232 -----------------------p-~~-----------~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la 276 (660)
| .. ..++.+.+.+-...|+.-.|+..-.+.++. |+-..++-.||
T Consensus 471 ~e~~e~~~t~~Sk~h~gd~~~~~p~ssp~~~e~leNm~~ai~A~~ayV~L~Lgd~i~AL~~a~kLLq~-~~lS~~~kfLG 549 (696)
T KOG2471|consen 471 SEHEEGNTTTDSKEHKGDMSQEIPQSSPSAFEDLENMRQAIFANMAYVELELGDPIKALSAATKLLQL-ADLSKIYKFLG 549 (696)
T ss_pred CcCCCCCCCcchhcCCCCCCccCCCCCcchHHHHHHHHHHHHHHHHHHHHHhcChhhHHHHHHHHHhh-hhhhhHHHHHH
Confidence 0 00 124567777888999999999999998887 45556666665
Q ss_pred HHH-----HhCCChHHHHHHHHHHH------Hh-----------------CCC----------C-----HHHHHHHHHHH
Q 006120 277 SAL-----HAMGEDERAIEVFQKAI------DL-----------------KPG----------H-----VDALYNLGGLY 313 (660)
Q Consensus 277 ~~~-----~~~g~~~~A~~~~~~al------~~-----------------~p~----------~-----~~a~~~La~~~ 313 (660)
.+| ..+.+..+|...+.--+ .+ +|. . ....++||.++
T Consensus 550 HiYAaEAL~lldr~seA~~HL~p~~~~~~~f~~~~n~~Df~~~~~~~e~l~~s~~r~~q~~~~sv~~Ar~v~~~nLa~a~ 629 (696)
T KOG2471|consen 550 HIYAAEALCLLDRPSEAGAHLSPYLLGQDDFKLPYNQEDFDQWWKHTETLDPSTGRTRQSVFLSVEEARGVLFANLAAAL 629 (696)
T ss_pred HHHHHHHHHHcCChhhhhhccChhhcCCcccccccchhhhhhhhccccccCCcCCCCcccccCCHHHHhHHHHHHHHHHH
Confidence 554 56889999988766521 11 111 1 12578999999
Q ss_pred HHhcCCCHHHHHHHHHHHHcccCC
Q 006120 314 MDLGAGETEEAKKALKEALKMTNR 337 (660)
Q Consensus 314 ~~~~~g~~~eA~~~~~~al~l~p~ 337 (660)
.-+ |++++|...+..|..+-+.
T Consensus 630 alq--~~~dqAk~ll~~aatl~hs 651 (696)
T KOG2471|consen 630 ALQ--GHHDQAKSLLTHAATLLHS 651 (696)
T ss_pred HHh--cccHHHHHHHHHHHHhhhc
Confidence 988 9999999999999988774
No 216
>smart00291 ZnF_ZZ Zinc-binding domain, present in Dystrophin, CREB-binding protein. Putative zinc-binding domain present in dystrophin-like proteins, and CREB-binding protein/p300 homologues. The ZZ in dystrophin appears to bind calmodulin. A missense mutation of one of the conserved cysteines in dystrophin results in a patient with Duchenne muscular dystrophy [3].
Probab=97.88 E-value=7.2e-06 Score=57.24 Aligned_cols=40 Identities=28% Similarity=0.792 Sum_probs=35.0
Q ss_pred CCCccccccccccccccccccc-cccccccccccCCCCCCC
Q 006120 588 HGRHVCSVCRYPIIGSRFKEMK-SHFSLCSQCYSEGKVPPT 627 (660)
Q Consensus 588 ~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~ 627 (660)
|-.++|..|+.||+|.||+=+. .+|.||..||++|+.+..
T Consensus 2 ~~~~~C~~C~~~i~g~ry~C~~C~d~dlC~~Cf~~~~~~~~ 42 (44)
T smart00291 2 HHSYSCDTCGKPIVGVRYHCLVCPDYDLCQSCFAKGSAGGE 42 (44)
T ss_pred CCCcCCCCCCCCCcCCEEECCCCCCccchHHHHhCcCcCCC
Confidence 5578999999999999998655 489999999999998854
No 217
>KOG4642 consensus Chaperone-dependent E3 ubiquitin protein ligase (contains TPR repeats) [Posttranslational modification, protein turnover, chaperones]
Probab=97.85 E-value=0.00013 Score=69.04 Aligned_cols=98 Identities=17% Similarity=0.137 Sum_probs=88.3
Q ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHH
Q 006120 201 PQIYVNLGIALEGEGMVLSACEYYRESAILCPTHFRALKLLGSALFGVGEYRAAVKALEEAIFIKPDYADAHCDLASALH 280 (660)
Q Consensus 201 ~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~ 280 (660)
+.-+..-|..+..-.+|..|+..|.+++.++|..+..|.+.+.++++.++++.+.....+++++.|+.+..++.+|..++
T Consensus 10 a~qlkE~gnk~f~~k~y~~ai~~y~raI~~nP~~~~Y~tnralchlk~~~~~~v~~dcrralql~~N~vk~h~flg~~~l 89 (284)
T KOG4642|consen 10 AEQLKEQGNKCFIPKRYDDAIDCYSRAICINPTVASYYTNRALCHLKLKHWEPVEEDCRRALQLDPNLVKAHYFLGQWLL 89 (284)
T ss_pred HHHHHhccccccchhhhchHHHHHHHHHhcCCCcchhhhhHHHHHHHhhhhhhhhhhHHHHHhcChHHHHHHHHHHHHHH
Confidence 33444556667777889999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hCCChHHHHHHHHHHHHh
Q 006120 281 AMGEDERAIEVFQKAIDL 298 (660)
Q Consensus 281 ~~g~~~~A~~~~~~al~~ 298 (660)
....+++|+..++++..+
T Consensus 90 ~s~~~~eaI~~Lqra~sl 107 (284)
T KOG4642|consen 90 QSKGYDEAIKVLQRAYSL 107 (284)
T ss_pred hhccccHHHHHHHHHHHH
Confidence 999999999999999766
No 218
>KOG2610 consensus Uncharacterized conserved protein [Function unknown]
Probab=97.83 E-value=0.0023 Score=63.63 Aligned_cols=160 Identities=16% Similarity=0.014 Sum_probs=129.6
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHHhccCCCchhchHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh-CCCc---HHHH
Q 006120 163 FRAGNCLYVLGRYREAKEEYLLALEAAETGGNQWAYLLPQIYVNLGIALEGEGMVLSACEYYRESAIL-CPTH---FRAL 238 (660)
Q Consensus 163 ~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~-~p~~---~~~~ 238 (660)
..-+.+....|++.+|....++.++-.|. ...++..--.++...|+...-...+++.+.. +++. ..+.
T Consensus 107 h~~aai~~~~g~~h~a~~~wdklL~d~Pt--------Dlla~kfsh~a~fy~G~~~~~k~ai~kIip~wn~dlp~~sYv~ 178 (491)
T KOG2610|consen 107 HAKAAILWGRGKHHEAAIEWDKLLDDYPT--------DLLAVKFSHDAHFYNGNQIGKKNAIEKIIPKWNADLPCYSYVH 178 (491)
T ss_pred hhhHHHhhccccccHHHHHHHHHHHhCch--------hhhhhhhhhhHHHhccchhhhhhHHHHhccccCCCCcHHHHHH
Confidence 33456677889999999999999999998 4455555556777888989889999998876 6665 4556
Q ss_pred HHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhCCChHHHHHHHHHHHHhCCCC----HHHHHHHHHHHH
Q 006120 239 KLLGSALFGVGEYRAAVKALEEAIFIKPDYADAHCDLASALHAMGEDERAIEVFQKAIDLKPGH----VDALYNLGGLYM 314 (660)
Q Consensus 239 ~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~----~~a~~~La~~~~ 314 (660)
-.++..+...|-|++|.+..++++++++.+..+...++.++...|++.++.+...+.-..-... ...|...+..+.
T Consensus 179 GmyaFgL~E~g~y~dAEk~A~ralqiN~~D~Wa~Ha~aHVlem~~r~Keg~eFM~~ted~Wr~s~mlasHNyWH~Al~~i 258 (491)
T KOG2610|consen 179 GMYAFGLEECGIYDDAEKQADRALQINRFDCWASHAKAHVLEMNGRHKEGKEFMYKTEDDWRQSWMLASHNYWHTALFHI 258 (491)
T ss_pred HHHHhhHHHhccchhHHHHHHhhccCCCcchHHHHHHHHHHHhcchhhhHHHHHHhcccchhhhhHHHhhhhHHHHHhhh
Confidence 6678888899999999999999999999999999999999999999999999987754332211 235667778888
Q ss_pred HhcCCCHHHHHHHHHHHH
Q 006120 315 DLGAGETEEAKKALKEAL 332 (660)
Q Consensus 315 ~~~~g~~~eA~~~~~~al 332 (660)
+. +.++.|++.|.+-+
T Consensus 259 E~--aeye~aleIyD~ei 274 (491)
T KOG2610|consen 259 EG--AEYEKALEIYDREI 274 (491)
T ss_pred cc--cchhHHHHHHHHHH
Confidence 76 99999999998754
No 219
>KOG4642 consensus Chaperone-dependent E3 ubiquitin protein ligase (contains TPR repeats) [Posttranslational modification, protein turnover, chaperones]
Probab=97.83 E-value=0.00024 Score=67.24 Aligned_cols=97 Identities=18% Similarity=0.145 Sum_probs=84.1
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhccCCCchhchHHHHHH
Q 006120 126 DGHMAIGRVLYEHQLFKEALVSFKRACELQPTDVRPHFRAGNCLYVLGRYREAKEEYLLALEAAETGGNQWAYLLPQIYV 205 (660)
Q Consensus 126 ~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~ 205 (660)
.-+-..|..++....|..|+.+|.+++.++|..+..+.+.+.++++..+++.+.....+++++.|+ ....++
T Consensus 11 ~qlkE~gnk~f~~k~y~~ai~~y~raI~~nP~~~~Y~tnralchlk~~~~~~v~~dcrralql~~N--------~vk~h~ 82 (284)
T KOG4642|consen 11 EQLKEQGNKCFIPKRYDDAIDCYSRAICINPTVASYYTNRALCHLKLKHWEPVEEDCRRALQLDPN--------LVKAHY 82 (284)
T ss_pred HHHHhccccccchhhhchHHHHHHHHHhcCCCcchhhhhHHHHHHHhhhhhhhhhhHHHHHhcChH--------HHHHHH
Confidence 344566777888888999999999999999998899999999999999999999999999999988 888899
Q ss_pred HHHHHHHHCCCHHHHHHHHHHHHHh
Q 006120 206 NLGIALEGEGMVLSACEYYRESAIL 230 (660)
Q Consensus 206 ~la~~~~~~g~~~~A~~~~~~al~~ 230 (660)
.+|........+++|+..++++..+
T Consensus 83 flg~~~l~s~~~~eaI~~Lqra~sl 107 (284)
T KOG4642|consen 83 FLGQWLLQSKGYDEAIKVLQRAYSL 107 (284)
T ss_pred HHHHHHHhhccccHHHHHHHHHHHH
Confidence 9999999999999999999888665
No 220
>COG3898 Uncharacterized membrane-bound protein [Function unknown]
Probab=97.80 E-value=0.0072 Score=61.40 Aligned_cols=201 Identities=18% Similarity=0.112 Sum_probs=109.7
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHHhCCCC--HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhccCCCchhchHHHHHHHHH
Q 006120 131 IGRVLYEHQLFKEALVSFKRACELQPTD--VRPHFRAGNCLYVLGRYREAKEEYLLALEAAETGGNQWAYLLPQIYVNLG 208 (660)
Q Consensus 131 lg~~~~~~g~~~~A~~~~~~al~~~p~~--~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~la 208 (660)
.|.+....|+-..|.+.-.++-++-..+ +-++..-++.-...|+++.|.+-|+..+. +|.. ...-+..|-
T Consensus 90 tGliAagAGda~lARkmt~~~~~llssDqepLIhlLeAQaal~eG~~~~Ar~kfeAMl~-dPEt-------RllGLRgLy 161 (531)
T COG3898 90 TGLIAAGAGDASLARKMTARASKLLSSDQEPLIHLLEAQAALLEGDYEDARKKFEAMLD-DPET-------RLLGLRGLY 161 (531)
T ss_pred hhhhhhccCchHHHHHHHHHHHhhhhccchHHHHHHHHHHHHhcCchHHHHHHHHHHhc-ChHH-------HHHhHHHHH
Confidence 3445555566666666666655432222 33444445556666777777666666554 2221 111122222
Q ss_pred HHHHHCCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh---CCCCH-----HHHHHHHHHHH
Q 006120 209 IALEGEGMVLSACEYYRESAILCPTHFRALKLLGSALFGVGEYRAAVKALEEAIFI---KPDYA-----DAHCDLASALH 280 (660)
Q Consensus 209 ~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~---~p~~~-----~~~~~la~~~~ 280 (660)
.--..+|..+.|..|-+++....|.-+-++...-......|+++.|+++.+..... .++.. ..+...+...
T Consensus 162 leAqr~GareaAr~yAe~Aa~~Ap~l~WA~~AtLe~r~~~gdWd~AlkLvd~~~~~~vie~~~aeR~rAvLLtAkA~s~- 240 (531)
T COG3898 162 LEAQRLGAREAARHYAERAAEKAPQLPWAARATLEARCAAGDWDGALKLVDAQRAAKVIEKDVAERSRAVLLTAKAMSL- 240 (531)
T ss_pred HHHHhcccHHHHHHHHHHHHhhccCCchHHHHHHHHHHhcCChHHHHHHHHHHHHHHhhchhhHHHHHHHHHHHHHHHH-
Confidence 22345666666777777766666666666666656666667777776666554433 12211 1111111111
Q ss_pred hCCChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHcccCChhHHH
Q 006120 281 AMGEDERAIEVFQKAIDLKPGHVDALYNLGGLYMDLGAGETEEAKKALKEALKMTNRVELHD 342 (660)
Q Consensus 281 ~~g~~~~A~~~~~~al~~~p~~~~a~~~La~~~~~~~~g~~~eA~~~~~~al~l~p~~~~~~ 342 (660)
..-+...|...-.+++++.|+...+-..-+..+... |+..++-..++.+.+..|.+++..
T Consensus 241 ldadp~~Ar~~A~~a~KL~pdlvPaav~AAralf~d--~~~rKg~~ilE~aWK~ePHP~ia~ 300 (531)
T COG3898 241 LDADPASARDDALEANKLAPDLVPAAVVAARALFRD--GNLRKGSKILETAWKAEPHPDIAL 300 (531)
T ss_pred hcCChHHHHHHHHHHhhcCCccchHHHHHHHHHHhc--cchhhhhhHHHHHHhcCCChHHHH
Confidence 223456666666666666666666666666666665 666777777777766666655543
No 221
>PF04184 ST7: ST7 protein; InterPro: IPR007311 The ST7 (for suppression of tumorigenicity 7) protein is thought to be a tumour suppressor gene. The molecular function of this protein is uncertain.
Probab=97.79 E-value=0.0015 Score=68.69 Aligned_cols=167 Identities=18% Similarity=0.165 Sum_probs=123.4
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHhccCCCchhchHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCC-------
Q 006120 161 PHFRAGNCLYVLGRYREAKEEYLLALEAAETGGNQWAYLLPQIYVNLGIALEGEGMVLSACEYYRESAILCPT------- 233 (660)
Q Consensus 161 ~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~------- 233 (660)
.-..+..-..+..++.+-++.-.+|++++|+ -+.+|..|+. .......+|..+++++++....
T Consensus 170 ~Aq~IMq~AWRERnp~aRIkaA~eALei~pd--------CAdAYILLAE--EeA~Ti~Eae~l~rqAvkAgE~~lg~s~~ 239 (539)
T PF04184_consen 170 PAQEIMQKAWRERNPQARIKAAKEALEINPD--------CADAYILLAE--EEASTIVEAEELLRQAVKAGEASLGKSQF 239 (539)
T ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHhhhh--------hhHHHhhccc--ccccCHHHHHHHHHHHHHHHHHhhchhhh
Confidence 3344555667788999999999999999998 7788877764 2234567888888888764211
Q ss_pred --------------c----HHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCC--CHHHHHHHHHHHHhCCChHHHHHHHH
Q 006120 234 --------------H----FRALKLLGSALFGVGEYRAAVKALEEAIFIKPD--YADAHCDLASALHAMGEDERAIEVFQ 293 (660)
Q Consensus 234 --------------~----~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~--~~~~~~~la~~~~~~g~~~~A~~~~~ 293 (660)
+ ..+...+|.+..+.|+.++|++.++..++..|. +..++.+|..+++.++.|.++...+.
T Consensus 240 ~~~~g~~~e~~~~Rdt~~~~y~KrRLAmCarklGr~~EAIk~~rdLlke~p~~~~l~IrenLie~LLelq~Yad~q~lL~ 319 (539)
T PF04184_consen 240 LQHHGHFWEAWHRRDTNVLVYAKRRLAMCARKLGRLREAIKMFRDLLKEFPNLDNLNIRENLIEALLELQAYADVQALLA 319 (539)
T ss_pred hhcccchhhhhhccccchhhhhHHHHHHHHHHhCChHHHHHHHHHHHhhCCccchhhHHHHHHHHHHhcCCHHHHHHHHH
Confidence 0 234567899999999999999999999988775 46789999999999999999999998
Q ss_pred HHHHh-CCCCHHHHHHHHHHHHHhcCCC---------------HHHHHHHHHHHHcccCCh
Q 006120 294 KAIDL-KPGHVDALYNLGGLYMDLGAGE---------------TEEAKKALKEALKMTNRV 338 (660)
Q Consensus 294 ~al~~-~p~~~~a~~~La~~~~~~~~g~---------------~~eA~~~~~~al~l~p~~ 338 (660)
+.-++ -|..+...+.-+.+..+.. ++ -..|.+.+.+|++.+|..
T Consensus 320 kYdDi~lpkSAti~YTaALLkaRav-~d~fs~e~a~rRGls~ae~~aveAi~RAvefNPHV 379 (539)
T PF04184_consen 320 KYDDISLPKSATICYTAALLKARAV-GDKFSPEAASRRGLSPAEMNAVEAIHRAVEFNPHV 379 (539)
T ss_pred HhccccCCchHHHHHHHHHHHHHhh-ccccCchhhhhcCCChhHHHHHHHHHHHHHhCCCC
Confidence 86444 2555555555554443321 22 134678889999988873
No 222
>KOG0545 consensus Aryl-hydrocarbon receptor-interacting protein [Posttranslational modification, protein turnover, chaperones]
Probab=97.77 E-value=0.0004 Score=65.88 Aligned_cols=101 Identities=24% Similarity=0.331 Sum_probs=79.5
Q ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHHh--------CCCC----------HHHHHHHHHHHHhCCChHHHHHHHHHHHH
Q 006120 236 RALKLLGSALFGVGEYRAAVKALEEAIFI--------KPDY----------ADAHCDLASALHAMGEDERAIEVFQKAID 297 (660)
Q Consensus 236 ~~~~~lg~~~~~~g~~~~A~~~~~~al~~--------~p~~----------~~~~~~la~~~~~~g~~~~A~~~~~~al~ 297 (660)
.++..-|+-++..|+|.+|...|+.|+.. .|.. ...+.|+++|++..|+|-++++.....+.
T Consensus 179 ~~l~q~GN~lfk~~~ykEA~~~YreAi~~l~~L~lkEkP~e~eW~eLdk~~tpLllNy~QC~L~~~e~yevleh~seiL~ 258 (329)
T KOG0545|consen 179 PVLHQEGNRLFKLGRYKEASSKYREAIICLRNLQLKEKPGEPEWLELDKMITPLLLNYCQCLLKKEEYYEVLEHCSEILR 258 (329)
T ss_pred HHHHHhhhhhhhhccHHHHHHHHHHHHHHHHHHHhccCCCChHHHHHHHhhhHHHHhHHHHHhhHHHHHHHHHHHHHHHh
Confidence 34555666666666666666666666543 2332 34678899999999999999999999999
Q ss_pred hCCCCHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHcccCCh
Q 006120 298 LKPGHVDALYNLGGLYMDLGAGETEEAKKALKEALKMTNRV 338 (660)
Q Consensus 298 ~~p~~~~a~~~La~~~~~~~~g~~~eA~~~~~~al~l~p~~ 338 (660)
..|.+..+++..|.+.... -+..+|...|.++|+++|..
T Consensus 259 ~~~~nvKA~frRakAhaa~--Wn~~eA~~D~~~vL~ldpsl 297 (329)
T KOG0545|consen 259 HHPGNVKAYFRRAKAHAAV--WNEAEAKADLQKVLELDPSL 297 (329)
T ss_pred cCCchHHHHHHHHHHHHhh--cCHHHHHHHHHHHHhcChhh
Confidence 9999999999999999887 89999999999999999874
No 223
>PF13428 TPR_14: Tetratricopeptide repeat
Probab=97.73 E-value=6.9e-05 Score=52.55 Aligned_cols=40 Identities=28% Similarity=0.439 Sum_probs=22.8
Q ss_pred HHHHHHHHHHhCCChHHHHHHHHHHHHhCCCCHHHHHHHH
Q 006120 271 AHCDLASALHAMGEDERAIEVFQKAIDLKPGHVDALYNLG 310 (660)
Q Consensus 271 ~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~La 310 (660)
++..+|.+|..+|++++|++.|+++++.+|+++.++..+|
T Consensus 3 ~~~~la~~~~~~G~~~~A~~~~~~~l~~~P~~~~a~~~La 42 (44)
T PF13428_consen 3 AWLALARAYRRLGQPDEAERLLRRALALDPDDPEAWRALA 42 (44)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCCHHHHHHhh
Confidence 4555555555555555555555555555555555555554
No 224
>KOG2471 consensus TPR repeat-containing protein [General function prediction only]
Probab=97.72 E-value=0.00047 Score=71.45 Aligned_cols=140 Identities=16% Similarity=0.043 Sum_probs=77.3
Q ss_pred HHHHcCCHHHHHHHHHHHHHHhccCCCchhchHHHHHHHHHHHHHHCCCHHHHHHHHHHHH-HhCCC------c--HHHH
Q 006120 168 CLYVLGRYREAKEEYLLALEAAETGGNQWAYLLPQIYVNLGIALEGEGMVLSACEYYRESA-ILCPT------H--FRAL 238 (660)
Q Consensus 168 ~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al-~~~p~------~--~~~~ 238 (660)
.+..+.+...+..-.+.+..+..+ .+......++.++..|++.+|.+.+...- ...|. . .-+|
T Consensus 215 ~llq~~~Lk~~krevK~vmn~a~~--------s~~~l~LKsq~eY~~gn~~kA~KlL~~sni~~~~g~~~T~q~~~cif~ 286 (696)
T KOG2471|consen 215 FLLQTRNLKLAKREVKHVMNIAQD--------SSMALLLKSQLEYAHGNHPKAMKLLLVSNIHKEAGGTITPQLSSCIFN 286 (696)
T ss_pred HHHHHHHHHHHHHhhhhhhhhcCC--------CcHHHHHHHHHHHHhcchHHHHHHHHhcccccccCccccchhhhheee
Confidence 334444444444444444444333 34445555555555566665555544321 11111 1 1234
Q ss_pred HHHHHHHHHCCCHHHHHHHHHHHHHh---------C---------CCCHHHHHHHHHHHHhCCChHHHHHHHHHHHHhCC
Q 006120 239 KLLGSALFGVGEYRAAVKALEEAIFI---------K---------PDYADAHCDLASALHAMGEDERAIEVFQKAIDLKP 300 (660)
Q Consensus 239 ~~lg~~~~~~g~~~~A~~~~~~al~~---------~---------p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p 300 (660)
+++|.++++.|.|..+..+|.+|++. . ...-++.+|.|..|...|++-.|.++|.++.....
T Consensus 287 NNlGcIh~~~~~y~~~~~~F~kAL~N~c~qL~~g~~~~~~~tls~nks~eilYNcG~~~Lh~grPl~AfqCf~~av~vfh 366 (696)
T KOG2471|consen 287 NNLGCIHYQLGCYQASSVLFLKALRNSCSQLRNGLKPAKTFTLSQNKSMEILYNCGLLYLHSGRPLLAFQCFQKAVHVFH 366 (696)
T ss_pred cCcceEeeehhhHHHHHHHHHHHHHHHHHHHhccCCCCcceehhcccchhhHHhhhHHHHhcCCcHHHHHHHHHHHHHHh
Confidence 55666666666666666666666541 1 12245677777777777777777777777777777
Q ss_pred CCHHHHHHHHHHHHH
Q 006120 301 GHVDALYNLGGLYMD 315 (660)
Q Consensus 301 ~~~~a~~~La~~~~~ 315 (660)
.+|..|..|+.+...
T Consensus 367 ~nPrlWLRlAEcCim 381 (696)
T KOG2471|consen 367 RNPRLWLRLAECCIM 381 (696)
T ss_pred cCcHHHHHHHHHHHH
Confidence 777777777776654
No 225
>PF05843 Suf: Suppressor of forked protein (Suf); InterPro: IPR008847 This domain consists of several eukaryotic suppressor of forked (Suf) like proteins. The Drosophila melanogaster suppressor of forked [Su(f)] protein shares homology with the Saccharomyces cerevisiae RNA14 protein and the 77 kDa subunit of Homo sapiens cleavage stimulation factor, which are proteins involved in mRNA 3' end formation. This suggests a role for Su(f) in mRNA 3' end formation in Drosophila. The su(f) gene produces three transcripts; two of them are polyadenylated at the end of the transcription unit, and one is a truncated transcript, polyadenylated in intron 4. It is thought that su(f) plays a role in the regulation of poly(A) site utilisation and the GU-rich sequence is important for this regulation to occur [].; GO: 0006397 mRNA processing, 0005634 nucleus; PDB: 2L9B_B 2OND_B 2OOE_A 4E85_B 4EBA_C 4E6H_A 2UY1_B.
Probab=97.71 E-value=0.0012 Score=67.15 Aligned_cols=132 Identities=14% Similarity=0.044 Sum_probs=60.6
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHhccCCCchhchHHHHHHHHHHHHHH-CCCHHHHHHHHHHHHHhCCCcHHHHHH
Q 006120 162 HFRAGNCLYVLGRYREAKEEYLLALEAAETGGNQWAYLLPQIYVNLGIALEG-EGMVLSACEYYRESAILCPTHFRALKL 240 (660)
Q Consensus 162 ~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~la~~~~~-~g~~~~A~~~~~~al~~~p~~~~~~~~ 240 (660)
|..+.+...+.+..+.|...|.+|.+..+. ...+|...|.+-.. .++...|...|+.+++..|.+...|..
T Consensus 4 ~i~~m~~~~r~~g~~~aR~vF~~a~~~~~~--------~~~vy~~~A~~E~~~~~d~~~A~~Ife~glk~f~~~~~~~~~ 75 (280)
T PF05843_consen 4 WIQYMRFMRRTEGIEAARKVFKRARKDKRC--------TYHVYVAYALMEYYCNKDPKRARKIFERGLKKFPSDPDFWLE 75 (280)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHCCCCS---------THHHHHHHHHHHHTCS-HHHHHHHHHHHHHHHTT-HHHHHH
T ss_pred HHHHHHHHHHhCChHHHHHHHHHHHcCCCC--------CHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHCCCCHHHHHH
Confidence 334444444444455555555555422111 23444444444333 233333555555555555555555555
Q ss_pred HHHHHHHCCCHHHHHHHHHHHHHhCCCCH---HHHHHHHHHHHhCCChHHHHHHHHHHHHhCCC
Q 006120 241 LGSALFGVGEYRAAVKALEEAIFIKPDYA---DAHCDLASALHAMGEDERAIEVFQKAIDLKPG 301 (660)
Q Consensus 241 lg~~~~~~g~~~~A~~~~~~al~~~p~~~---~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~ 301 (660)
....+...|+.+.|...|++++..-+... .+|......-...|+.+......+++.+..|+
T Consensus 76 Y~~~l~~~~d~~~aR~lfer~i~~l~~~~~~~~iw~~~i~fE~~~Gdl~~v~~v~~R~~~~~~~ 139 (280)
T PF05843_consen 76 YLDFLIKLNDINNARALFERAISSLPKEKQSKKIWKKFIEFESKYGDLESVRKVEKRAEELFPE 139 (280)
T ss_dssp HHHHHHHTT-HHHHHHHHHHHCCTSSCHHHCHHHHHHHHHHHHHHS-HHHHHHHHHHHHHHTTT
T ss_pred HHHHHHHhCcHHHHHHHHHHHHHhcCchhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhh
Confidence 55555555555555555555554433322 34555555555555555555555555555554
No 226
>KOG0545 consensus Aryl-hydrocarbon receptor-interacting protein [Posttranslational modification, protein turnover, chaperones]
Probab=97.70 E-value=0.00073 Score=64.18 Aligned_cols=108 Identities=22% Similarity=0.187 Sum_probs=94.8
Q ss_pred HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh--------CCCc----------HHHHHHHHHHHHHCCCHHHHHHHHHHH
Q 006120 200 LPQIYVNLGIALEGEGMVLSACEYYRESAIL--------CPTH----------FRALKLLGSALFGVGEYRAAVKALEEA 261 (660)
Q Consensus 200 ~~~~~~~la~~~~~~g~~~~A~~~~~~al~~--------~p~~----------~~~~~~lg~~~~~~g~~~~A~~~~~~a 261 (660)
...++..-|+-++.+|+|.+|...|+.|+.. .|.. ...+.|++.++...|+|-++++.....
T Consensus 177 av~~l~q~GN~lfk~~~ykEA~~~YreAi~~l~~L~lkEkP~e~eW~eLdk~~tpLllNy~QC~L~~~e~yevleh~sei 256 (329)
T KOG0545|consen 177 AVPVLHQEGNRLFKLGRYKEASSKYREAIICLRNLQLKEKPGEPEWLELDKMITPLLLNYCQCLLKKEEYYEVLEHCSEI 256 (329)
T ss_pred hhHHHHHhhhhhhhhccHHHHHHHHHHHHHHHHHHHhccCCCChHHHHHHHhhhHHHHhHHHHHhhHHHHHHHHHHHHHH
Confidence 3466778899999999999999999998642 3433 447889999999999999999999999
Q ss_pred HHhCCCCHHHHHHHHHHHHhCCChHHHHHHHHHHHHhCCCCHHHHH
Q 006120 262 IFIKPDYADAHCDLASALHAMGEDERAIEVFQKAIDLKPGHVDALY 307 (660)
Q Consensus 262 l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~ 307 (660)
+...|.+..+++..|.+....=+.++|...|.++++++|....+-.
T Consensus 257 L~~~~~nvKA~frRakAhaa~Wn~~eA~~D~~~vL~ldpslasvVs 302 (329)
T KOG0545|consen 257 LRHHPGNVKAYFRRAKAHAAVWNEAEAKADLQKVLELDPSLASVVS 302 (329)
T ss_pred HhcCCchHHHHHHHHHHHHhhcCHHHHHHHHHHHHhcChhhHHHHH
Confidence 9999999999999999999999999999999999999998765443
No 227
>PF13428 TPR_14: Tetratricopeptide repeat
Probab=97.66 E-value=0.00011 Score=51.52 Aligned_cols=41 Identities=29% Similarity=0.317 Sum_probs=23.6
Q ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHH
Q 006120 237 ALKLLGSALFGVGEYRAAVKALEEAIFIKPDYADAHCDLAS 277 (660)
Q Consensus 237 ~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~ 277 (660)
++..+|..|...|++++|++.|+++++.+|+++.+|..+|.
T Consensus 3 ~~~~la~~~~~~G~~~~A~~~~~~~l~~~P~~~~a~~~La~ 43 (44)
T PF13428_consen 3 AWLALARAYRRLGQPDEAERLLRRALALDPDDPEAWRALAQ 43 (44)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCCHHHHHHhhh
Confidence 45555555555555555555555555555555555555543
No 228
>KOG2053 consensus Mitochondrial inheritance and actin cytoskeleton organization protein [Cytoskeleton]
Probab=97.66 E-value=0.011 Score=66.04 Aligned_cols=184 Identities=18% Similarity=0.116 Sum_probs=137.7
Q ss_pred HHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhccCCCchhchHHHHHHHHHHHHHHCC
Q 006120 136 YEHQLFKEALVSFKRACELQPTDVRPHFRAGNCLYVLGRYREAKEEYLLALEAAETGGNQWAYLLPQIYVNLGIALEGEG 215 (660)
Q Consensus 136 ~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~la~~~~~~g 215 (660)
...+++.+|+....+.++..|+...+...-|.++.++|+.++|..+++..-...++ ...++-.+-.+|..+|
T Consensus 20 ld~~qfkkal~~~~kllkk~Pn~~~a~vLkaLsl~r~gk~~ea~~~Le~~~~~~~~--------D~~tLq~l~~~y~d~~ 91 (932)
T KOG2053|consen 20 LDSSQFKKALAKLGKLLKKHPNALYAKVLKALSLFRLGKGDEALKLLEALYGLKGT--------DDLTLQFLQNVYRDLG 91 (932)
T ss_pred hhhHHHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHhcCchhHHHHHhhhccCCCC--------chHHHHHHHHHHHHHh
Confidence 45678999999999999999999999999999999999999999777665555554 4567778889999999
Q ss_pred CHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHH-HHHHHHHHHhCCChHH-------
Q 006120 216 MVLSACEYYRESAILCPTHFRALKLLGSALFGVGEYRAAVKALEEAIFIKPDYADA-HCDLASALHAMGEDER------- 287 (660)
Q Consensus 216 ~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~-~~~la~~~~~~g~~~~------- 287 (660)
++++|..+|++++..+|. -.....+-.+|.+.+.|.+-.+.--+..+..|.++.. |..+..++......++
T Consensus 92 ~~d~~~~~Ye~~~~~~P~-eell~~lFmayvR~~~yk~qQkaa~~LyK~~pk~~yyfWsV~Slilqs~~~~~~~~~~i~l 170 (932)
T KOG2053|consen 92 KLDEAVHLYERANQKYPS-EELLYHLFMAYVREKSYKKQQKAALQLYKNFPKRAYYFWSVISLILQSIFSENELLDPILL 170 (932)
T ss_pred hhhHHHHHHHHHHhhCCc-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCcccchHHHHHHHHHHhccCCcccccchhH
Confidence 999999999999999999 8888888889999998887666666666677877654 4444444444433333
Q ss_pred --HHHHHHHHHHhC-CCC--HHHHHHHHHHHHHhcCCCHHHHHHHHHHH
Q 006120 288 --AIEVFQKAIDLK-PGH--VDALYNLGGLYMDLGAGETEEAKKALKEA 331 (660)
Q Consensus 288 --A~~~~~~al~~~-p~~--~~a~~~La~~~~~~~~g~~~eA~~~~~~a 331 (660)
|...+++.++.. +-. +++...+ .++..+ |++++|...+..-
T Consensus 171 ~LA~~m~~~~l~~~gk~~s~aE~~Lyl-~iL~~~--~k~~eal~~l~~~ 216 (932)
T KOG2053|consen 171 ALAEKMVQKLLEKKGKIESEAEIILYL-LILELQ--GKYQEALEFLAIT 216 (932)
T ss_pred HHHHHHHHHHhccCCccchHHHHHHHH-HHHHhc--ccHHHHHHHHHHH
Confidence 444555555554 222 2222222 334444 8999999999443
No 229
>cd02334 ZZ_dystrophin Zinc finger, ZZ type. Zinc finger present in dystrophin and dystrobrevin. The ZZ motif coordinates two zinc ions and most likely participates in ligand binding or molecular scaffolding. Dystrophin attaches actin filaments to an integral membrane glycoprotein complex in muscle cells. The ZZ domain in dystrophin has been shown to be essential for binding to the membrane protein beta-dystroglycan.
Probab=97.63 E-value=2.3e-05 Score=55.55 Aligned_cols=47 Identities=32% Similarity=0.893 Sum_probs=36.1
Q ss_pred ccccccc-cccccccccccc-cccccccccccCCCCCCCCccccchhhcc
Q 006120 591 HVCSVCR-YPIIGSRFKEMK-SHFSLCSQCYSEGKVPPTFKQDEYKFKEY 638 (660)
Q Consensus 591 ~~~~~~~-~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 638 (660)
++|.+|. .||+|.|||=+. .+|.||..||+.|+.+.+=+ ....++||
T Consensus 1 ~~Cd~C~~~pi~g~RykC~~C~d~DLC~~Cf~~g~~~~~H~-~~Hp~~e~ 49 (49)
T cd02334 1 AKCNICKEFPITGFRYRCLKCFNYDLCQSCFFSGRTSKSHK-NSHPMKEY 49 (49)
T ss_pred CCCCCCCCCCceeeeEECCCCCCcCchHHHHhCCCcCCCCC-CCCCeecC
Confidence 4799999 799999999654 58999999999998775433 12255555
No 230
>PF05843 Suf: Suppressor of forked protein (Suf); InterPro: IPR008847 This domain consists of several eukaryotic suppressor of forked (Suf) like proteins. The Drosophila melanogaster suppressor of forked [Su(f)] protein shares homology with the Saccharomyces cerevisiae RNA14 protein and the 77 kDa subunit of Homo sapiens cleavage stimulation factor, which are proteins involved in mRNA 3' end formation. This suggests a role for Su(f) in mRNA 3' end formation in Drosophila. The su(f) gene produces three transcripts; two of them are polyadenylated at the end of the transcription unit, and one is a truncated transcript, polyadenylated in intron 4. It is thought that su(f) plays a role in the regulation of poly(A) site utilisation and the GU-rich sequence is important for this regulation to occur [].; GO: 0006397 mRNA processing, 0005634 nucleus; PDB: 2L9B_B 2OND_B 2OOE_A 4E85_B 4EBA_C 4E6H_A 2UY1_B.
Probab=97.63 E-value=0.0013 Score=66.74 Aligned_cols=134 Identities=13% Similarity=0.109 Sum_probs=111.3
Q ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHH-CCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHH
Q 006120 202 QIYVNLGIALEGEGMVLSACEYYRESAILCPTHFRALKLLGSALFG-VGEYRAAVKALEEAIFIKPDYADAHCDLASALH 280 (660)
Q Consensus 202 ~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~-~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~ 280 (660)
.+|..+.....+.+..+.|...|.+|++..+....+|...|.+.+. .++.+.|...|+.+++..|.+...|......+.
T Consensus 2 ~v~i~~m~~~~r~~g~~~aR~vF~~a~~~~~~~~~vy~~~A~~E~~~~~d~~~A~~Ife~glk~f~~~~~~~~~Y~~~l~ 81 (280)
T PF05843_consen 2 LVWIQYMRFMRRTEGIEAARKVFKRARKDKRCTYHVYVAYALMEYYCNKDPKRARKIFERGLKKFPSDPDFWLEYLDFLI 81 (280)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCS-THHHHHHHHHHHHTCS-HHHHHHHHHHHHHHHTT-HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCChHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHH
Confidence 3566677777777789999999999997666678899999999777 566666999999999999999999999999999
Q ss_pred hCCChHHHHHHHHHHHHhCCCCH---HHHHHHHHHHHHhcCCCHHHHHHHHHHHHcccCC
Q 006120 281 AMGEDERAIEVFQKAIDLKPGHV---DALYNLGGLYMDLGAGETEEAKKALKEALKMTNR 337 (660)
Q Consensus 281 ~~g~~~~A~~~~~~al~~~p~~~---~a~~~La~~~~~~~~g~~~eA~~~~~~al~l~p~ 337 (660)
..|+.+.|...|++++..-|... ..|......-... |+.+......+++.++-|.
T Consensus 82 ~~~d~~~aR~lfer~i~~l~~~~~~~~iw~~~i~fE~~~--Gdl~~v~~v~~R~~~~~~~ 139 (280)
T PF05843_consen 82 KLNDINNARALFERAISSLPKEKQSKKIWKKFIEFESKY--GDLESVRKVEKRAEELFPE 139 (280)
T ss_dssp HTT-HHHHHHHHHHHCCTSSCHHHCHHHHHHHHHHHHHH--S-HHHHHHHHHHHHHHTTT
T ss_pred HhCcHHHHHHHHHHHHHhcCchhHHHHHHHHHHHHHHHc--CCHHHHHHHHHHHHHHhhh
Confidence 99999999999999998876654 4677777777777 9999999999999999877
No 231
>COG2909 MalT ATP-dependent transcriptional regulator [Transcription]
Probab=97.63 E-value=0.085 Score=59.51 Aligned_cols=308 Identities=12% Similarity=-0.033 Sum_probs=181.5
Q ss_pred CCcchhhccCchHHHHhccCchhhHHHHHHHHHHHH-----hhccCCcCCchHHhhhHHHHHHhCCchH--HHHhHHHHH
Q 006120 23 RTAAWAVSPNHGIVFDDTWKIVDDLEILVKRLKAKQ-----AKDGKLKGDNSDAFSDAGWSRELGTSAE--ISEKRVFWE 95 (660)
Q Consensus 23 ~p~~~~~~~~lg~~y~~~~~~~~al~~~~~~~~~a~-----~~~~~l~~~~~~a~~~~~~~~~l~~~~~--~~~~~~~l~ 95 (660)
.+...+.+.+-+.-+...|...+|+++...+-+-.+ ++.+....+......-..|...+..+-. .....+..+
T Consensus 343 ~~~~~~lH~~Aa~w~~~~g~~~eAI~hAlaA~d~~~aa~lle~~~~~L~~~~~lsll~~~~~~lP~~~l~~~P~Lvll~a 422 (894)
T COG2909 343 AARLKELHRAAAEWFAEHGLPSEAIDHALAAGDPEMAADLLEQLEWQLFNGSELSLLLAWLKALPAELLASTPRLVLLQA 422 (894)
T ss_pred CCchhHHHHHHHHHHHhCCChHHHHHHHHhCCCHHHHHHHHHhhhhhhhcccchHHHHHHHHhCCHHHHhhCchHHHHHH
Confidence 344455666666777777888888777665432111 1122222222222222223322211111 112233333
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhccC------cHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC-----HHHHHH
Q 006120 96 ESTHDYAVFVKELGVLRNRADGARS------REEAFDGHMAIGRVLYEHQLFKEALVSFKRACELQPTD-----VRPHFR 164 (660)
Q Consensus 96 ~~~~~~g~~~~Al~~l~~a~~~~~~------~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~-----~~~~~~ 164 (660)
.......++.+|-..+.+.....+. ....+...-..|.+....|+.++|++..+.++..-|.+ ..+...
T Consensus 423 W~~~s~~r~~ea~~li~~l~~~l~~~~~~~~~~l~ae~~aL~a~val~~~~~e~a~~lar~al~~L~~~~~~~r~~~~sv 502 (894)
T COG2909 423 WLLASQHRLAEAETLIARLEHFLKAPMHSRQGDLLAEFQALRAQVALNRGDPEEAEDLARLALVQLPEAAYRSRIVALSV 502 (894)
T ss_pred HHHHHccChHHHHHHHHHHHHHhCcCcccchhhHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhcccccchhhhhhhhh
Confidence 4444555566666655555544332 23334555667889999999999999999999987764 456788
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHHHhccCCCchhchHHHHHHHHHHHHHHCCCHH--HHHHHHHHHH----HhCCCcHHHH
Q 006120 165 AGNCLYVLGRYREAKEEYLLALEAAETGGNQWAYLLPQIYVNLGIALEGEGMVL--SACEYYRESA----ILCPTHFRAL 238 (660)
Q Consensus 165 la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~la~~~~~~g~~~--~A~~~~~~al----~~~p~~~~~~ 238 (660)
+|.+..-.|++++|..+..++.+.......... ...+.+..+.++..+|+.. +....+...- ...|-+.-..
T Consensus 503 ~~~a~~~~G~~~~Al~~~~~a~~~a~~~~~~~l--~~~~~~~~s~il~~qGq~~~a~~~~~~~~~~~q~l~q~~~~~f~~ 580 (894)
T COG2909 503 LGEAAHIRGELTQALALMQQAEQMARQHDVYHL--ALWSLLQQSEILEAQGQVARAEQEKAFNLIREQHLEQKPRHEFLV 580 (894)
T ss_pred hhHHHHHhchHHHHHHHHHHHHHHHHHcccHHH--HHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHhhhcccchhHH
Confidence 899999999999999999999998776544433 5566677788999999433 3333333222 2233333333
Q ss_pred HHHHHHHHHCCCHHHHHHHHHHHHHhC----CCC--H-HHHHHHHHHHHhCCChHHHHHHHHHHHHhCCCC-----HHHH
Q 006120 239 KLLGSALFGVGEYRAAVKALEEAIFIK----PDY--A-DAHCDLASALHAMGEDERAIEVFQKAIDLKPGH-----VDAL 306 (660)
Q Consensus 239 ~~lg~~~~~~g~~~~A~~~~~~al~~~----p~~--~-~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~-----~~a~ 306 (660)
...+.++...-+++.+.......++.. |.. . .+++.|+.++...|++++|...+.+...+-.+. ..+.
T Consensus 581 ~~r~~ll~~~~r~~~~~~ear~~~~~~~~~~~~~~~~~~~~~~LA~l~~~~Gdl~~A~~~l~~~~~l~~~~~~~~~~~a~ 660 (894)
T COG2909 581 RIRAQLLRAWLRLDLAEAEARLGIEVGSVYTPQPLLSRLALSMLAELEFLRGDLDKALAQLDELERLLLNGQYHVDYLAA 660 (894)
T ss_pred HHHHHHHHHHHHHhhhhHHhhhcchhhhhcccchhHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHhcCCCCCchHHHH
Confidence 333444433333666666666655552 322 1 223589999999999999999999887663221 2222
Q ss_pred HHHHHHHHHhcCCCHHHHHHHHHHHH
Q 006120 307 YNLGGLYMDLGAGETEEAKKALKEAL 332 (660)
Q Consensus 307 ~~La~~~~~~~~g~~~eA~~~~~~al 332 (660)
..+..+...+.+|+.++|.....+..
T Consensus 661 ~~~v~~~lwl~qg~~~~a~~~l~~s~ 686 (894)
T COG2909 661 AYKVKLILWLAQGDKELAAEWLLKSG 686 (894)
T ss_pred HHHhhHHHhcccCCHHHHHHHHHhcc
Confidence 22222222223499999998888844
No 232
>cd02342 ZZ_UBA_plant Zinc finger, ZZ type. Zinc finger present in plant ubiquitin-associated (UBA) proteins. The ZZ motif coordinates a zinc ion and most likely participates in ligand binding or molecular scaffolding.
Probab=97.63 E-value=1.7e-05 Score=53.35 Aligned_cols=31 Identities=39% Similarity=0.956 Sum_probs=24.6
Q ss_pred ccccccc-ccccccccccc-ccccccccccccC
Q 006120 591 HVCSVCR-YPIIGSRFKEM-KSHFSLCSQCYSE 621 (660)
Q Consensus 591 ~~~~~~~-~~~~~~~~~~~-~~~~~~~~~~~~~ 621 (660)
++|-.|+ .||+|.|||=. -.+|-||..||.+
T Consensus 1 I~CDgCg~~PI~G~RykC~~C~dyDLC~~C~~~ 33 (43)
T cd02342 1 IQCDGCGVLPITGPRYKSKVKEDYDLCTICFSR 33 (43)
T ss_pred CCCCCCCCCcccccceEeCCCCCCccHHHHhhh
Confidence 5799999 69999999954 5677788887654
No 233
>PF13281 DUF4071: Domain of unknown function (DUF4071)
Probab=97.62 E-value=0.051 Score=56.58 Aligned_cols=184 Identities=17% Similarity=0.055 Sum_probs=126.2
Q ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhccCCCchhchHHHHHHHHHHHHHH---CCCHHHHHHHHHHHH-HhCCC
Q 006120 158 DVRPHFRAGNCLYVLGRYREAKEEYLLALEAAETGGNQWAYLLPQIYVNLGIALEG---EGMVLSACEYYRESA-ILCPT 233 (660)
Q Consensus 158 ~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~la~~~~~---~g~~~~A~~~~~~al-~~~p~ 233 (660)
.+++..++-..|....+|+.-+++.+..-.+ |...... ...+...+|.++.+ .|+.++|+..+..++ ...+.
T Consensus 140 s~div~~lllSyRdiqdydamI~Lve~l~~~-p~~~~~~---~~~i~~~yafALnRrn~~gdre~Al~il~~~l~~~~~~ 215 (374)
T PF13281_consen 140 SPDIVINLLLSYRDIQDYDAMIKLVETLEAL-PTCDVAN---QHNIKFQYAFALNRRNKPGDREKALQILLPVLESDENP 215 (374)
T ss_pred ChhHHHHHHHHhhhhhhHHHHHHHHHHhhcc-Cccchhc---chHHHHHHHHHHhhcccCCCHHHHHHHHHHHHhccCCC
Confidence 4567778888899999999988888776655 2211111 55677788888888 999999999999954 45667
Q ss_pred cHHHHHHHHHHHHH---------CCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhCCChHHHHHHHHHHH-Hh-----
Q 006120 234 HFRALKLLGSALFG---------VGEYRAAVKALEEAIFIKPDYADAHCDLASALHAMGEDERAIEVFQKAI-DL----- 298 (660)
Q Consensus 234 ~~~~~~~lg~~~~~---------~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al-~~----- 298 (660)
+++.+..+|.+|.. ....++|+..|.++.+++|+ ...=.|++.++...|...+...-+++.. .+
T Consensus 216 ~~d~~gL~GRIyKD~~~~s~~~d~~~ldkAi~~Y~kgFe~~~~-~Y~GIN~AtLL~~~g~~~~~~~el~~i~~~l~~llg 294 (374)
T PF13281_consen 216 DPDTLGLLGRIYKDLFLESNFTDRESLDKAIEWYRKGFEIEPD-YYSGINAATLLMLAGHDFETSEELRKIGVKLSSLLG 294 (374)
T ss_pred ChHHHHHHHHHHHHHHHHcCccchHHHHHHHHHHHHHHcCCcc-ccchHHHHHHHHHcCCcccchHHHHHHHHHHHHHHH
Confidence 78999999998853 22478999999999999964 4455677777777776544433333322 11
Q ss_pred --C---C-CCHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHcccCC-hhHHHHHHHHH
Q 006120 299 --K---P-GHVDALYNLGGLYMDLGAGETEEAKKALKEALKMTNR-VELHDAVSHLK 348 (660)
Q Consensus 299 --~---p-~~~~a~~~La~~~~~~~~g~~~eA~~~~~~al~l~p~-~~~~~~~~~l~ 348 (660)
. + .+.-.+..++.+..-. |++++|.+++++++.+.|. -+....+..+.
T Consensus 295 ~kg~~~~~~dYWd~ATl~Ea~vL~--~d~~ka~~a~e~~~~l~~~~W~l~St~~ni~ 349 (374)
T PF13281_consen 295 RKGSLEKMQDYWDVATLLEASVLA--GDYEKAIQAAEKAFKLKPPAWELESTLENIK 349 (374)
T ss_pred hhccccccccHHHHHHHHHHHHHc--CCHHHHHHHHHHHhhcCCcchhHHHHHHHHH
Confidence 1 1 1122334455666666 9999999999999999865 33333344433
No 234
>KOG2300 consensus Uncharacterized conserved protein [Function unknown]
Probab=97.59 E-value=0.022 Score=59.54 Aligned_cols=220 Identities=19% Similarity=0.169 Sum_probs=154.7
Q ss_pred HHHHHHHHHHHHHHHHhhccCcHHH-----------HHHHHHHHHHHHHcCCHHHHHHHHHHHHHh---CCC-------C
Q 006120 100 DYAVFVKELGVLRNRADGARSREEA-----------FDGHMAIGRVLYEHQLFKEALVSFKRACEL---QPT-------D 158 (660)
Q Consensus 100 ~~g~~~~Al~~l~~a~~~~~~~~~~-----------~~~~~~lg~~~~~~g~~~~A~~~~~~al~~---~p~-------~ 158 (660)
--|-++++.++-++++......+.. ...+-.+..+-.-.|++.+|++....+.+. .|. .
T Consensus 287 ~~gy~~~~~K~tDe~i~q~eklkq~d~~srilsm~km~~LE~iv~c~lv~~~~~~al~~i~dm~~w~~r~p~~~Llr~~~ 366 (629)
T KOG2300|consen 287 PAGYFKKAQKYTDEAIKQTEKLKQADLMSRILSMFKMILLEHIVMCRLVRGDYVEALEEIVDMKNWCTRFPTPLLLRAHE 366 (629)
T ss_pred hhHHHHHHHHHHHHHHHHHhhcccccchhHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhCCchHHHHHhH
Confidence 4577888888888777654322111 123445566777889999999998888775 344 3
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhccCCCchhchHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCc----
Q 006120 159 VRPHFRAGNCLYVLGRYREAKEEYLLALEAAETGGNQWAYLLPQIYVNLGIALEGEGMVLSACEYYRESAILCPTH---- 234 (660)
Q Consensus 159 ~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~---- 234 (660)
+..+..+|......+.++.|...|..+.+.-.... +.+..-.++|..|...|+-+.-.+.++. +.|.+
T Consensus 367 ~~ih~LlGlys~sv~~~enAe~hf~~a~k~t~~~d-----l~a~~nlnlAi~YL~~~~~ed~y~~ld~---i~p~nt~s~ 438 (629)
T KOG2300|consen 367 AQIHMLLGLYSHSVNCYENAEFHFIEATKLTESID-----LQAFCNLNLAISYLRIGDAEDLYKALDL---IGPLNTNSL 438 (629)
T ss_pred HHHHHHHhhHhhhcchHHHHHHHHHHHHHhhhHHH-----HHHHHHHhHHHHHHHhccHHHHHHHHHh---cCCCCCCcc
Confidence 56778889888899999999999999998765421 1566778899999998776554444433 44442
Q ss_pred ------HHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCC------HHHHHHHHHHHHhCCChHHHHHHHHHHHHhC---
Q 006120 235 ------FRALKLLGSALFGVGEYRAAVKALEEAIFIKPDY------ADAHCDLASALHAMGEDERAIEVFQKAIDLK--- 299 (660)
Q Consensus 235 ------~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~------~~~~~~la~~~~~~g~~~~A~~~~~~al~~~--- 299 (660)
..+++..|...+.++++.||...+.+.+++.... +-.+..||.+....|+..++....+-++++.
T Consensus 439 ssq~l~a~~~~v~glfaf~qn~lnEaK~~l~e~Lkmanaed~~rL~a~~LvLLs~v~lslgn~~es~nmvrpamqlAkKi 518 (629)
T KOG2300|consen 439 SSQRLEASILYVYGLFAFKQNDLNEAKRFLRETLKMANAEDLNRLTACSLVLLSHVFLSLGNTVESRNMVRPAMQLAKKI 518 (629)
T ss_pred hHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHhhcchhhHHHHHHHHHHHHHHHHHHhcchHHHHhccchHHHHHhcC
Confidence 4567788889999999999999999999986211 3346678999999999999999998888775
Q ss_pred CCCHHHHH---HHHHHHHHhcCCC--HHHHHHHHH
Q 006120 300 PGHVDALY---NLGGLYMDLGAGE--TEEAKKALK 329 (660)
Q Consensus 300 p~~~~a~~---~La~~~~~~~~g~--~~eA~~~~~ 329 (660)
|+.+.-++ .+-.++... |+ .+...+.+.
T Consensus 519 ~Di~vqLws~si~~~L~~a~--g~~~~~~e~e~~~ 551 (629)
T KOG2300|consen 519 PDIPVQLWSSSILTDLYQAL--GEKGNEMENEAFR 551 (629)
T ss_pred CCchHHHHHHHHHHHHHHHh--CcchhhHHHHHHH
Confidence 55443333 334455555 54 444444443
No 235
>PF13281 DUF4071: Domain of unknown function (DUF4071)
Probab=97.57 E-value=0.043 Score=57.06 Aligned_cols=171 Identities=20% Similarity=0.123 Sum_probs=122.7
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHh----CCCCHHHHHHHHHHHHH---cCCHHHHHHHHHHHHHHhccCCCchhc
Q 006120 126 DGHMAIGRVLYEHQLFKEALVSFKRACEL----QPTDVRPHFRAGNCLYV---LGRYREAKEEYLLALEAAETGGNQWAY 198 (660)
Q Consensus 126 ~~~~~lg~~~~~~g~~~~A~~~~~~al~~----~p~~~~~~~~la~~~~~---~g~~~~A~~~~~~al~~~p~~~~~~~~ 198 (660)
+...++=..|....+|+.-+.+.+..-.+ -++...+....|.++.+ .|+.++|+..+..++......
T Consensus 142 div~~lllSyRdiqdydamI~Lve~l~~~p~~~~~~~~~i~~~yafALnRrn~~gdre~Al~il~~~l~~~~~~------ 215 (374)
T PF13281_consen 142 DIVINLLLSYRDIQDYDAMIKLVETLEALPTCDVANQHNIKFQYAFALNRRNKPGDREKALQILLPVLESDENP------ 215 (374)
T ss_pred hHHHHHHHHhhhhhhHHHHHHHHHHhhccCccchhcchHHHHHHHHHHhhcccCCCHHHHHHHHHHHHhccCCC------
Confidence 55667777899999999988888877666 35567788889999999 999999999999976554432
Q ss_pred hHHHHHHHHHHHHHH---------CCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHH-Hh----
Q 006120 199 LLPQIYVNLGIALEG---------EGMVLSACEYYRESAILCPTHFRALKLLGSALFGVGEYRAAVKALEEAI-FI---- 264 (660)
Q Consensus 199 ~~~~~~~~la~~~~~---------~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al-~~---- 264 (660)
.++++..+|.+|.. ....++|+..|+++.+++|+. ..-.|++.++...|...+...-+++.. .+
T Consensus 216 -~~d~~gL~GRIyKD~~~~s~~~d~~~ldkAi~~Y~kgFe~~~~~-Y~GIN~AtLL~~~g~~~~~~~el~~i~~~l~~ll 293 (374)
T PF13281_consen 216 -DPDTLGLLGRIYKDLFLESNFTDRESLDKAIEWYRKGFEIEPDY-YSGINAATLLMLAGHDFETSEELRKIGVKLSSLL 293 (374)
T ss_pred -ChHHHHHHHHHHHHHHHHcCccchHHHHHHHHHHHHHHcCCccc-cchHHHHHHHHHcCCcccchHHHHHHHHHHHHHH
Confidence 66778888877743 235789999999999999654 344556666666665333322222211 11
Q ss_pred -------CCCCHHHHHHHHHHHHhCCChHHHHHHHHHHHHhCCCCHH
Q 006120 265 -------KPDYADAHCDLASALHAMGEDERAIEVFQKAIDLKPGHVD 304 (660)
Q Consensus 265 -------~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~ 304 (660)
.-.+-..+..++.+..-.|++++|++.+++++++.|....
T Consensus 294 g~kg~~~~~~dYWd~ATl~Ea~vL~~d~~ka~~a~e~~~~l~~~~W~ 340 (374)
T PF13281_consen 294 GRKGSLEKMQDYWDVATLLEASVLAGDYEKAIQAAEKAFKLKPPAWE 340 (374)
T ss_pred HhhccccccccHHHHHHHHHHHHHcCCHHHHHHHHHHHhhcCCcchh
Confidence 1122334456788888999999999999999999877544
No 236
>KOG0376 consensus Serine-threonine phosphatase 2A, catalytic subunit [General function prediction only]
Probab=97.55 E-value=0.00011 Score=76.46 Aligned_cols=113 Identities=20% Similarity=0.171 Sum_probs=85.6
Q ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhC
Q 006120 203 IYVNLGIALEGEGMVLSACEYYRESAILCPTHFRALKLLGSALFGVGEYRAAVKALEEAIFIKPDYADAHCDLASALHAM 282 (660)
Q Consensus 203 ~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~ 282 (660)
..-+.+.-....+.++.|+..|.++++++|+.+..+.+.+..+.+.+++..|+.-+.+|++++|....+|+..|.+.+..
T Consensus 6 e~k~ean~~l~~~~fd~avdlysKaI~ldpnca~~~anRa~a~lK~e~~~~Al~Da~kaie~dP~~~K~Y~rrg~a~m~l 85 (476)
T KOG0376|consen 6 ELKNEANEALKDKVFDVAVDLYSKAIELDPNCAIYFANRALAHLKVESFGGALHDALKAIELDPTYIKAYVRRGTAVMAL 85 (476)
T ss_pred hhhhHHhhhcccchHHHHHHHHHHHHhcCCcceeeechhhhhheeechhhhHHHHHHhhhhcCchhhheeeeccHHHHhH
Confidence 33445555666777888888888888888888777777777778888888888888888888888888888888888888
Q ss_pred CChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH
Q 006120 283 GEDERAIEVFQKAIDLKPGHVDALYNLGGLYMD 315 (660)
Q Consensus 283 g~~~~A~~~~~~al~~~p~~~~a~~~La~~~~~ 315 (660)
+++.+|...|+....+.|+.+.+...+..+-..
T Consensus 86 ~~~~~A~~~l~~~~~l~Pnd~~~~r~~~Ec~~~ 118 (476)
T KOG0376|consen 86 GEFKKALLDLEKVKKLAPNDPDATRKIDECNKI 118 (476)
T ss_pred HHHHHHHHHHHHhhhcCcCcHHHHHHHHHHHHH
Confidence 888888888888888888877776666655443
No 237
>PF13431 TPR_17: Tetratricopeptide repeat
Probab=97.55 E-value=8.2e-05 Score=48.76 Aligned_cols=30 Identities=33% Similarity=0.428 Sum_probs=13.1
Q ss_pred HHHHHhCCCCHHHHHHHHHHHHhCCChHHH
Q 006120 259 EEAIFIKPDYADAHCDLASALHAMGEDERA 288 (660)
Q Consensus 259 ~~al~~~p~~~~~~~~la~~~~~~g~~~~A 288 (660)
+++|+++|+++.+|+++|.+|...|++++|
T Consensus 3 ~kAie~~P~n~~a~~nla~~~~~~g~~~~A 32 (34)
T PF13431_consen 3 KKAIELNPNNAEAYNNLANLYLNQGDYEEA 32 (34)
T ss_pred HHHHHHCCCCHHHHHHHHHHHHHCcCHHhh
Confidence 344444444444444444444444444443
No 238
>KOG3616 consensus Selective LIM binding factor [Transcription]
Probab=97.47 E-value=0.019 Score=62.50 Aligned_cols=197 Identities=17% Similarity=0.094 Sum_probs=117.9
Q ss_pred hHHhhhHHHHHHhCCchHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHhhccCcHHHHHHHHHHHHHHHHcCCHHHHHHHH
Q 006120 69 SDAFSDAGWSRELGTSAEISEKRVFWEESTHDYAVFVKELGVLRNRADGARSREEAFDGHMAIGRVLYEHQLFKEALVSF 148 (660)
Q Consensus 69 ~~a~~~~~~~~~l~~~~~~~~~~~~l~~~~~~~g~~~~Al~~l~~a~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~ 148 (660)
.++|+++..+-.+.-..+.+...-.||.-+...|+++.|+..+-++-. +...........++.+|+.++
T Consensus 687 gdaf~kaielarfafp~evv~lee~wg~hl~~~~q~daainhfiea~~-----------~~kaieaai~akew~kai~il 755 (1636)
T KOG3616|consen 687 GDAFGKAIELARFAFPEEVVKLEEAWGDHLEQIGQLDAAINHFIEANC-----------LIKAIEAAIGAKEWKKAISIL 755 (1636)
T ss_pred ccHHHHHHHHHHhhCcHHHhhHHHHHhHHHHHHHhHHHHHHHHHHhhh-----------HHHHHHHHhhhhhhhhhHhHH
Confidence 345666666666666777778888889999999999999998876632 222233445556777777776
Q ss_pred HHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhccCCCchhchHHHHHHHHHHHHHHCCCHHHHHHHHHHHH
Q 006120 149 KRACELQPTDVRPHFRAGNCLYVLGRYREAKEEYLLALEAAETGGNQWAYLLPQIYVNLGIALEGEGMVLSACEYYRESA 228 (660)
Q Consensus 149 ~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al 228 (660)
...-... .....+-.++.-|...|+|+-|.++|.++-.. ......|.+.|+|..|...-.+..
T Consensus 756 dniqdqk-~~s~yy~~iadhyan~~dfe~ae~lf~e~~~~----------------~dai~my~k~~kw~da~kla~e~~ 818 (1636)
T KOG3616|consen 756 DNIQDQK-TASGYYGEIADHYANKGDFEIAEELFTEADLF----------------KDAIDMYGKAGKWEDAFKLAEECH 818 (1636)
T ss_pred HHhhhhc-cccccchHHHHHhccchhHHHHHHHHHhcchh----------------HHHHHHHhccccHHHHHHHHHHhc
Confidence 6544332 12344556677777788888887777554322 112234566677777766655542
Q ss_pred HhCCCc-HHHHHHHHHHHHHCCCHHHHHHHHHH------HHHh-----------------CCCC-HHHHHHHHHHHHhCC
Q 006120 229 ILCPTH-FRALKLLGSALFGVGEYRAAVKALEE------AIFI-----------------KPDY-ADAHCDLASALHAMG 283 (660)
Q Consensus 229 ~~~p~~-~~~~~~lg~~~~~~g~~~~A~~~~~~------al~~-----------------~p~~-~~~~~~la~~~~~~g 283 (660)
.|.. ...|...+.-+-+.|++.+|.+.|-. ++.+ .|+. .+.+..+|.-|...|
T Consensus 819 --~~e~t~~~yiakaedldehgkf~eaeqlyiti~~p~~aiqmydk~~~~ddmirlv~k~h~d~l~dt~~~f~~e~e~~g 896 (1636)
T KOG3616|consen 819 --GPEATISLYIAKAEDLDEHGKFAEAEQLYITIGEPDKAIQMYDKHGLDDDMIRLVEKHHGDHLHDTHKHFAKELEAEG 896 (1636)
T ss_pred --CchhHHHHHHHhHHhHHhhcchhhhhheeEEccCchHHHHHHHhhCcchHHHHHHHHhChhhhhHHHHHHHHHHHhcc
Confidence 2332 33444455555555555555544421 1111 1221 345556677777777
Q ss_pred ChHHHHHHHHHH
Q 006120 284 EDERAIEVFQKA 295 (660)
Q Consensus 284 ~~~~A~~~~~~a 295 (660)
+...|...|-++
T Consensus 897 ~lkaae~~flea 908 (1636)
T KOG3616|consen 897 DLKAAEEHFLEA 908 (1636)
T ss_pred ChhHHHHHHHhh
Confidence 777777776655
No 239
>cd02336 ZZ_RSC8 Zinc finger, ZZ type. Zinc finger present in RSC8 and related proteins. RSC8 is a component of the RSC complex, which is closely related to the SWI/SNF complex and is involved in remodeling chromatin structure. The ZZ motif coordinates a zinc ion and most likely participates in ligand binding or molecular scaffolding.
Probab=97.46 E-value=5.9e-05 Score=52.33 Aligned_cols=42 Identities=29% Similarity=0.816 Sum_probs=36.7
Q ss_pred ccccccccccccccccccccc-cccccccccCCCCCCCCcccc
Q 006120 591 HVCSVCRYPIIGSRFKEMKSH-FSLCSQCYSEGKVPPTFKQDE 632 (660)
Q Consensus 591 ~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~ 632 (660)
..|.+|+-.+..-|+.-.+.. +.||+.||.+|+.|+++.--.
T Consensus 1 y~C~~Cg~D~t~vryh~~~~~~~dLC~~CF~~G~f~~~~~s~D 43 (45)
T cd02336 1 YHCFTCGNDCTRVRYHNLKAKKYDLCPSCYQEGRFPSNFQSSD 43 (45)
T ss_pred CcccCCCCccCceEEEecCCCccccChHHHhCcCCCCCCcccc
Confidence 369999999999999988776 999999999999999986543
No 240
>PF13431 TPR_17: Tetratricopeptide repeat
Probab=97.45 E-value=0.00014 Score=47.61 Aligned_cols=34 Identities=24% Similarity=0.455 Sum_probs=31.6
Q ss_pred HHHHHHHhCCCcHHHHHHHHHHHHHCCCHHHHHH
Q 006120 223 YYRESAILCPTHFRALKLLGSALFGVGEYRAAVK 256 (660)
Q Consensus 223 ~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~ 256 (660)
+|+++++++|+++.+|+++|.+|...|++++|++
T Consensus 1 ~y~kAie~~P~n~~a~~nla~~~~~~g~~~~A~~ 34 (34)
T PF13431_consen 1 CYKKAIELNPNNAEAYNNLANLYLNQGDYEEAIA 34 (34)
T ss_pred ChHHHHHHCCCCHHHHHHHHHHHHHCcCHHhhcC
Confidence 3789999999999999999999999999999863
No 241
>COG3118 Thioredoxin domain-containing protein [Posttranslational modification, protein turnover, chaperones]
Probab=97.41 E-value=0.022 Score=56.37 Aligned_cols=159 Identities=18% Similarity=0.165 Sum_probs=105.0
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhccCCCchhchHHHHHH
Q 006120 126 DGHMAIGRVLYEHQLFKEALVSFKRACELQPTDVRPHFRAGNCLYVLGRYREAKEEYLLALEAAETGGNQWAYLLPQIYV 205 (660)
Q Consensus 126 ~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~ 205 (660)
+.-+..+......|++.+|...|..+++..|++..+...++.+|...|+.+.|...+...-...... ......
T Consensus 135 e~~~~~~~~~~~~e~~~~a~~~~~~al~~~~~~~~~~~~la~~~l~~g~~e~A~~iL~~lP~~~~~~-------~~~~l~ 207 (304)
T COG3118 135 EEALAEAKELIEAEDFGEAAPLLKQALQAAPENSEAKLLLAECLLAAGDVEAAQAILAALPLQAQDK-------AAHGLQ 207 (304)
T ss_pred HHHHHHhhhhhhccchhhHHHHHHHHHHhCcccchHHHHHHHHHHHcCChHHHHHHHHhCcccchhh-------HHHHHH
Confidence 4456677888899999999999999999999999999999999999999999988776533222210 111111
Q ss_pred HHHHHHHHCCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCC--CCHHHHHHHHHHHHhCC
Q 006120 206 NLGIALEGEGMVLSACEYYRESAILCPTHFRALKLLGSALFGVGEYRAAVKALEEAIFIKP--DYADAHCDLASALHAMG 283 (660)
Q Consensus 206 ~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p--~~~~~~~~la~~~~~~g 283 (660)
..-..+.+.....+. ..+++.+..+|++..+-+.++..+...|+.++|.+.+-..+..+. ++..+.-.+-.++...|
T Consensus 208 a~i~ll~qaa~~~~~-~~l~~~~aadPdd~~aa~~lA~~~~~~g~~e~Ale~Ll~~l~~d~~~~d~~~Rk~lle~f~~~g 286 (304)
T COG3118 208 AQIELLEQAAATPEI-QDLQRRLAADPDDVEAALALADQLHLVGRNEAALEHLLALLRRDRGFEDGEARKTLLELFEAFG 286 (304)
T ss_pred HHHHHHHHHhcCCCH-HHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcccccCcHHHHHHHHHHHhcC
Confidence 111222222222221 223444566888888888888888888888888888887777653 23445555555555555
Q ss_pred ChHHHHHHH
Q 006120 284 EDERAIEVF 292 (660)
Q Consensus 284 ~~~~A~~~~ 292 (660)
.-+.+...+
T Consensus 287 ~~Dp~~~~~ 295 (304)
T COG3118 287 PADPLVLAY 295 (304)
T ss_pred CCCHHHHHH
Confidence 443333333
No 242
>KOG0376 consensus Serine-threonine phosphatase 2A, catalytic subunit [General function prediction only]
Probab=97.41 E-value=0.00023 Score=74.31 Aligned_cols=109 Identities=18% Similarity=0.152 Sum_probs=94.5
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhccCCCchhchHHHHHHHHH
Q 006120 129 MAIGRVLYEHQLFKEALVSFKRACELQPTDVRPHFRAGNCLYVLGRYREAKEEYLLALEAAETGGNQWAYLLPQIYVNLG 208 (660)
Q Consensus 129 ~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~la 208 (660)
-..+...+..++++.|+..|.++++++|+.+..+.+.+.++.+.+++..|+.-+.++++.+|. ...+|+..|
T Consensus 8 k~ean~~l~~~~fd~avdlysKaI~ldpnca~~~anRa~a~lK~e~~~~Al~Da~kaie~dP~--------~~K~Y~rrg 79 (476)
T KOG0376|consen 8 KNEANEALKDKVFDVAVDLYSKAIELDPNCAIYFANRALAHLKVESFGGALHDALKAIELDPT--------YIKAYVRRG 79 (476)
T ss_pred hhHHhhhcccchHHHHHHHHHHHHhcCCcceeeechhhhhheeechhhhHHHHHHhhhhcCch--------hhheeeecc
Confidence 345677778889999999999999999999988889999999999999999999999999988 888899999
Q ss_pred HHHHHCCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHH
Q 006120 209 IALEGEGMVLSACEYYRESAILCPTHFRALKLLGSAL 245 (660)
Q Consensus 209 ~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~ 245 (660)
.+....+++.+|...|+....+.|+.+.+...+-.+-
T Consensus 80 ~a~m~l~~~~~A~~~l~~~~~l~Pnd~~~~r~~~Ec~ 116 (476)
T KOG0376|consen 80 TAVMALGEFKKALLDLEKVKKLAPNDPDATRKIDECN 116 (476)
T ss_pred HHHHhHHHHHHHHHHHHHhhhcCcCcHHHHHHHHHHH
Confidence 9999999999999999999999999888877665543
No 243
>PF10300 DUF3808: Protein of unknown function (DUF3808); InterPro: IPR019412 This entry represents a family of proteins conserved from fungi to humans. In humans this protein is expressed in primary breast carcinomas but not in normal breast tissue, and has a putative eukaryotic RNP-1 RNA binding region and a candidate anchoring transmembrane domain. The human protein is coordinately regulated with oestrogen receptor, but is not necessarily oestradiol-responsive []. Members of this family carry a tetratricopeptide repeat (IPR013105 from INTERPRO) at their C terminus.
Probab=97.41 E-value=0.01 Score=64.91 Aligned_cols=119 Identities=16% Similarity=0.002 Sum_probs=76.2
Q ss_pred cCCHHHHHHHHHHHHHHhccCCCchhchHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCc----HHHHHHHHHHHHH
Q 006120 172 LGRYREAKEEYLLALEAAETGGNQWAYLLPQIYVNLGIALEGEGMVLSACEYYRESAILCPTH----FRALKLLGSALFG 247 (660)
Q Consensus 172 ~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~----~~~~~~lg~~~~~ 247 (660)
....+.|.+.+....+..|+ .+..++..|.++...|+.++|++.|++++...... .-.++.++.++..
T Consensus 246 ~~~~~~a~~lL~~~~~~yP~--------s~lfl~~~gR~~~~~g~~~~Ai~~~~~a~~~q~~~~Ql~~l~~~El~w~~~~ 317 (468)
T PF10300_consen 246 DVPLEEAEELLEEMLKRYPN--------SALFLFFEGRLERLKGNLEEAIESFERAIESQSEWKQLHHLCYFELAWCHMF 317 (468)
T ss_pred CCCHHHHHHHHHHHHHhCCC--------cHHHHHHHHHHHHHhcCHHHHHHHHHHhccchhhHHhHHHHHHHHHHHHHHH
Confidence 34556677777777777776 56666667777777777777777777666432222 2355667777777
Q ss_pred CCCHHHHHHHHHHHHHhCCCC-HHHHHHHHHHHHhCCCh-------HHHHHHHHHHHHh
Q 006120 248 VGEYRAAVKALEEAIFIKPDY-ADAHCDLASALHAMGED-------ERAIEVFQKAIDL 298 (660)
Q Consensus 248 ~g~~~~A~~~~~~al~~~p~~-~~~~~~la~~~~~~g~~-------~~A~~~~~~al~~ 298 (660)
+.+|++|..++.+..+.+.-. ....+..|.++...++. ++|...+.++-.+
T Consensus 318 ~~~w~~A~~~f~~L~~~s~WSka~Y~Y~~a~c~~~l~~~~~~~~~~~~a~~l~~~vp~l 376 (468)
T PF10300_consen 318 QHDWEEAAEYFLRLLKESKWSKAFYAYLAAACLLMLGREEEAKEHKKEAEELFRKVPKL 376 (468)
T ss_pred HchHHHHHHHHHHHHhccccHHHHHHHHHHHHHHhhccchhhhhhHHHHHHHHHHHHHH
Confidence 777777777777777655433 33344556667777776 7777777766554
No 244
>cd02344 ZZ_HERC2 Zinc finger, ZZ type. Zinc finger present in HERC2 and related proteins. HERC2 is a potential E3 ubiquitin protein ligase and/or guanine nucleotide exchange factor. The ZZ motif coordinates two zinc ions and most likely participates in ligand binding or molecular scaffolding.
Probab=97.38 E-value=8.2e-05 Score=51.50 Aligned_cols=36 Identities=33% Similarity=0.837 Sum_probs=30.3
Q ss_pred ccccccc-cccccccccccc-cccccccccccCCCCCC
Q 006120 591 HVCSVCR-YPIIGSRFKEMK-SHFSLCSQCYSEGKVPP 626 (660)
Q Consensus 591 ~~~~~~~-~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~ 626 (660)
++|..|. .||+|.|||=.. .+|.||..||..++-++
T Consensus 1 V~Cd~C~~~pI~G~RykC~~C~dyDLC~~Cf~~~~H~~ 38 (45)
T cd02344 1 VTCDGCQMFPINGPRFKCRNCDDFDFCENCFKTRKHNT 38 (45)
T ss_pred CCCCCCCCCCCccCeEECCCCCCccchHHhhCCCCcCC
Confidence 4799998 699999999554 57999999999987653
No 245
>PF03704 BTAD: Bacterial transcriptional activator domain; InterPro: IPR005158 Found in the DNRI/REDD/AFSR family of regulators, this region of AFSR (P25941 from SWISSPROT) along with the C-terminal region is capable of independently directing actinorhodin production. It is important for the formation of secondary metabolites.; PDB: 2FF4_B 2FEZ_A.
Probab=97.35 E-value=0.01 Score=53.75 Aligned_cols=114 Identities=26% Similarity=0.216 Sum_probs=64.4
Q ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHCCCHH-HHHHHHHHHHHhCCCCHHHHHHHHHHHHhC
Q 006120 204 YVNLGIALEGEGMVLSACEYYRESAILCPTHFRALKLLGSALFGVGEYR-AAVKALEEAIFIKPDYADAHCDLASALHAM 282 (660)
Q Consensus 204 ~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~-~A~~~~~~al~~~p~~~~~~~~la~~~~~~ 282 (660)
+...|......++...++..+++++.+.....-.-.. ...+- .....++.. ...+...++..+...
T Consensus 9 ~~~~a~~~~~~~~~~~~~~~~~~al~ly~G~~l~~~~-------~~~W~~~~r~~l~~~------~~~~~~~l~~~~~~~ 75 (146)
T PF03704_consen 9 LVREARAAARAGDPEEAIELLEEALALYRGDFLPDLD-------DEEWVEPERERLREL------YLDALERLAEALLEA 75 (146)
T ss_dssp HHHHHHHHHHTT-HHHHHHHHHHHHTT--SSTTGGGT-------TSTTHHHHHHHHHHH------HHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHHhCCCCCCCCC-------ccHHHHHHHHHHHHH------HHHHHHHHHHHHHhc
Confidence 3444555566677777777777777654221000000 01111 111111111 134556677777778
Q ss_pred CChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCCCHHHHHHHHHHHH
Q 006120 283 GEDERAIEVFQKAIDLKPGHVDALYNLGGLYMDLGAGETEEAKKALKEAL 332 (660)
Q Consensus 283 g~~~~A~~~~~~al~~~p~~~~a~~~La~~~~~~~~g~~~eA~~~~~~al 332 (660)
|++++|+..+++++..+|.+..++..+..+|... |+..+|++.|++..
T Consensus 76 ~~~~~a~~~~~~~l~~dP~~E~~~~~lm~~~~~~--g~~~~A~~~Y~~~~ 123 (146)
T PF03704_consen 76 GDYEEALRLLQRALALDPYDEEAYRLLMRALAAQ--GRRAEALRVYERYR 123 (146)
T ss_dssp T-HHHHHHHHHHHHHHSTT-HHHHHHHHHHHHHT--T-HHHHHHHHHHHH
T ss_pred cCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHC--cCHHHHHHHHHHHH
Confidence 8888888888888888888888888888888877 78888887777764
No 246
>cd02338 ZZ_PCMF_like Zinc finger, ZZ type. Zinc finger present in potassium channel modulatory factor (PCMF) 1 and related proteins. The ZZ motif coordinates two zinc ions and most likely participates in ligand binding or molecular scaffolding. Human potassium channel modulatory factor 1 or FIGC has been shown to possess intrinsic E3 ubiquitin ligase activity and to promote ubiquitination.
Probab=97.30 E-value=9.7e-05 Score=52.76 Aligned_cols=37 Identities=27% Similarity=0.683 Sum_probs=31.7
Q ss_pred ccccccc-cccccccccc-cccccccccccccCCCCCCC
Q 006120 591 HVCSVCR-YPIIGSRFKE-MKSHFSLCSQCYSEGKVPPT 627 (660)
Q Consensus 591 ~~~~~~~-~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~ 627 (660)
+.|..|+ .||+|.|||= .=.+|.||..|++.|..+..
T Consensus 1 i~C~~C~~~~i~g~R~~C~~C~d~dlC~~Cf~~~~~~~~ 39 (49)
T cd02338 1 VSCDGCGKSNFTGRRYKCLICYDYDLCADCYDSGVTTER 39 (49)
T ss_pred CCCCCCcCCCcEEeeEEeCCCCCCccchhHHhCCCcCCC
Confidence 4799999 8999999993 34689999999999987654
No 247
>PF00515 TPR_1: Tetratricopeptide repeat; InterPro: IPR001440 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]. It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. The X-ray structure of a domain containing three TPRs from protein phosphatase 5 revealed that TPR adopts a helix-turn-helix arrangement, with adjacent TPR motifs packing in a parallel fashion, resulting in a spiral of repeating anti-parallel alpha-helices []. The two helices are denoted helix A and helix B. The packing angle between helix A and helix B is ~24 degrees; within a single TPR and generates a right-handed superhelical shape. Helix A interacts with helix B and with helix A' of the next TPR. Two protein surfaces are generated: the inner concave surface is contributed to mainly by residue on helices A, and the other surface presents residues from both helices A and B. ; GO: 0005515 protein binding; PDB: 3SF4_C 2LNI_A 1ELW_A 2C0M_A 1FCH_B 3R9A_B 2J9Q_A 2C0L_A 1KT1_A 3FWV_A ....
Probab=97.30 E-value=0.00043 Score=45.35 Aligned_cols=31 Identities=35% Similarity=0.656 Sum_probs=14.8
Q ss_pred HHHHHHHHHHhCCChHHHHHHHHHHHHhCCC
Q 006120 271 AHCDLASALHAMGEDERAIEVFQKAIDLKPG 301 (660)
Q Consensus 271 ~~~~la~~~~~~g~~~~A~~~~~~al~~~p~ 301 (660)
+|+++|.++..+|++++|+.+|+++++++|+
T Consensus 3 ~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~ 33 (34)
T PF00515_consen 3 AYYNLGNAYFQLGDYEEALEYYQRALELDPD 33 (34)
T ss_dssp HHHHHHHHHHHTT-HHHHHHHHHHHHHHSTT
T ss_pred HHHHHHHHHHHhCCchHHHHHHHHHHHHCcC
Confidence 4444555555555555555555555554443
No 248
>PF02259 FAT: FAT domain; InterPro: IPR003151 The FAT domain is a domain present in the PIK-related kinases. Members of the family of PIK-related kinases may act as intracellular sensors that govern radial and horizontal pathways [].; GO: 0005515 protein binding
Probab=97.28 E-value=0.13 Score=53.94 Aligned_cols=173 Identities=16% Similarity=0.097 Sum_probs=99.1
Q ss_pred CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhccCCCchhchHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCC-c
Q 006120 156 PTDVRPHFRAGNCLYVLGRYREAKEEYLLALEAAETGGNQWAYLLPQIYVNLGIALEGEGMVLSACEYYRESAILCPT-H 234 (660)
Q Consensus 156 p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~-~ 234 (660)
......+...+.+....|+++.|...+.++....+..... .+.+.+..+.++...|+..+|+..++..+..... .
T Consensus 143 ~~~~~~~l~~a~~aRk~g~~~~A~~~l~~~~~~~~~~~~~----~~~v~~e~akllw~~g~~~~Ai~~L~~~~~~~~~~~ 218 (352)
T PF02259_consen 143 EELAETWLKFAKLARKAGNFQLALSALNRLFQLNPSSESL----LPRVFLEYAKLLWAQGEQEEAIQKLRELLKCRLSKN 218 (352)
T ss_pred hHHHHHHHHHHHHHHHCCCcHHHHHHHHHHhccCCcccCC----CcchHHHHHHHHHHcCCHHHHHHHHHHHHHHHhhhc
Confidence 3456678888888888888888888888887766433221 3466777788888888888888888777762111 1
Q ss_pred --HHHHHHHHHHHHH--CCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhC------CChHHHHHHHHHHHHhCCCCHH
Q 006120 235 --FRALKLLGSALFG--VGEYRAAVKALEEAIFIKPDYADAHCDLASALHAM------GEDERAIEVFQKAIDLKPGHVD 304 (660)
Q Consensus 235 --~~~~~~lg~~~~~--~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~------g~~~~A~~~~~~al~~~p~~~~ 304 (660)
......+...... ........... .....+.++..+|...... +..++++..|+++++++|+...
T Consensus 219 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~a~~~l~~a~w~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~k 293 (352)
T PF02259_consen 219 IDSISNAELKSGLLESLEVISSTNLDKE-----SKELKAKAFLLLAKWLDELYSKLSSESSDEILKYYKEATKLDPSWEK 293 (352)
T ss_pred cccccHHHHhhccccccccccccchhhh-----hHHHHHHHHHHHHHHHHhhccccccccHHHHHHHHHHHHHhChhHHH
Confidence 0000000000000 00000000000 0001134555666665555 6777777777777777777777
Q ss_pred HHHHHHHHHHHhcC---------------CCHHHHHHHHHHHHcccCC
Q 006120 305 ALYNLGGLYMDLGA---------------GETEEAKKALKEALKMTNR 337 (660)
Q Consensus 305 a~~~La~~~~~~~~---------------g~~~eA~~~~~~al~l~p~ 337 (660)
+|..+|..+...-. .-...|+..|-+++.+.+.
T Consensus 294 ~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~ai~~y~~al~~~~~ 341 (352)
T PF02259_consen 294 AWHSWALFNDKLLESDPREKEESSQEDRSEYLEQAIEGYLKALSLGSK 341 (352)
T ss_pred HHHHHHHHHHHHHHhhhhcccccchhHHHHHHHHHHHHHHHHHhhCCC
Confidence 77776666544310 1124588888888888877
No 249
>KOG2300 consensus Uncharacterized conserved protein [Function unknown]
Probab=97.28 E-value=0.097 Score=54.94 Aligned_cols=195 Identities=18% Similarity=0.121 Sum_probs=144.2
Q ss_pred HcCCHHHHHHHHHHHHHhC------CCCH--------HHHHHHHHHHHHcCCHHHHHHHHHHHHHHhccCCC--chhchH
Q 006120 137 EHQLFKEALVSFKRACELQ------PTDV--------RPHFRAGNCLYVLGRYREAKEEYLLALEAAETGGN--QWAYLL 200 (660)
Q Consensus 137 ~~g~~~~A~~~~~~al~~~------p~~~--------~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~--~~~~~~ 200 (660)
..|-+++|.++-.+++... +... ..+-.+..|-.-.|++.+|++....+.+.....+. ....-.
T Consensus 287 ~~gy~~~~~K~tDe~i~q~eklkq~d~~srilsm~km~~LE~iv~c~lv~~~~~~al~~i~dm~~w~~r~p~~~Llr~~~ 366 (629)
T KOG2300|consen 287 PAGYFKKAQKYTDEAIKQTEKLKQADLMSRILSMFKMILLEHIVMCRLVRGDYVEALEEIVDMKNWCTRFPTPLLLRAHE 366 (629)
T ss_pred hhHHHHHHHHHHHHHHHHHhhcccccchhHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhCCchHHHHHhH
Confidence 5677888888888887652 1111 23445677778899999999999998887655443 111125
Q ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCc---HHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCC---------
Q 006120 201 PQIYVNLGIALEGEGMVLSACEYYRESAILCPTH---FRALKLLGSALFGVGEYRAAVKALEEAIFIKPDY--------- 268 (660)
Q Consensus 201 ~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~---~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~--------- 268 (660)
+.++..+|......|.++.|...|..|.+..... +-+..++|.+|...|+-+.-.+.++ .+.|.+
T Consensus 367 ~~ih~LlGlys~sv~~~enAe~hf~~a~k~t~~~dl~a~~nlnlAi~YL~~~~~ed~y~~ld---~i~p~nt~s~ssq~l 443 (629)
T KOG2300|consen 367 AQIHMLLGLYSHSVNCYENAEFHFIEATKLTESIDLQAFCNLNLAISYLRIGDAEDLYKALD---LIGPLNTNSLSSQRL 443 (629)
T ss_pred HHHHHHHhhHhhhcchHHHHHHHHHHHHHhhhHHHHHHHHHHhHHHHHHHhccHHHHHHHHH---hcCCCCCCcchHHHH
Confidence 7888999999999999999999999999875432 4456788999999887554443333 344442
Q ss_pred -HHHHHHHHHHHHhCCChHHHHHHHHHHHHhCCCC------HHHHHHHHHHHHHhcCCCHHHHHHHHHHHHcccC
Q 006120 269 -ADAHCDLASALHAMGEDERAIEVFQKAIDLKPGH------VDALYNLGGLYMDLGAGETEEAKKALKEALKMTN 336 (660)
Q Consensus 269 -~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~------~~a~~~La~~~~~~~~g~~~eA~~~~~~al~l~p 336 (660)
..+++..|...+.++++.||...+.+.++..... ...+..|+.+.... |+..++....+-++++..
T Consensus 444 ~a~~~~v~glfaf~qn~lnEaK~~l~e~Lkmanaed~~rL~a~~LvLLs~v~lsl--gn~~es~nmvrpamqlAk 516 (629)
T KOG2300|consen 444 EASILYVYGLFAFKQNDLNEAKRFLRETLKMANAEDLNRLTACSLVLLSHVFLSL--GNTVESRNMVRPAMQLAK 516 (629)
T ss_pred HHHHHHHHHHHHHHhccHHHHHHHHHHHHhhcchhhHHHHHHHHHHHHHHHHHHh--cchHHHHhccchHHHHHh
Confidence 4567778888899999999999999999886211 23566778888888 999999999988888763
No 250
>KOG0551 consensus Hsp90 co-chaperone CNS1 (contains TPR repeats) [Posttranslational modification, protein turnover, chaperones]
Probab=97.26 E-value=0.0022 Score=63.81 Aligned_cols=97 Identities=25% Similarity=0.264 Sum_probs=51.9
Q ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHhCCCC----HHHHHHHHHHHHhCCChHHHHHHHHHHHHhCCCCHHHHHHHHHHH
Q 006120 238 LKLLGSALFGVGEYRAAVKALEEAIFIKPDY----ADAHCDLASALHAMGEDERAIEVFQKAIDLKPGHVDALYNLGGLY 313 (660)
Q Consensus 238 ~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~----~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~La~~~ 313 (660)
+..-|+-|++.++|..|+..|.+.|...-.+ +..|.|.|.+....|+|..|+.-+.+++.++|.+..+++.-+.++
T Consensus 84 ~KeeGN~~fK~Kryk~A~~~Yt~Glk~kc~D~dlnavLY~NRAAa~~~l~NyRs~l~Dcs~al~~~P~h~Ka~~R~Akc~ 163 (390)
T KOG0551|consen 84 YKEEGNEYFKEKRYKDAVESYTEGLKKKCADPDLNAVLYTNRAAAQLYLGNYRSALNDCSAALKLKPTHLKAYIRGAKCL 163 (390)
T ss_pred HHHHhHHHHHhhhHHHHHHHHHHHHhhcCCCccHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHhcCcchhhhhhhhhHHH
Confidence 3344555555555555555555555543222 334555555555555555555555555555555555555555555
Q ss_pred HHhcCCCHHHHHHHHHHHHcccC
Q 006120 314 MDLGAGETEEAKKALKEALKMTN 336 (660)
Q Consensus 314 ~~~~~g~~~eA~~~~~~al~l~p 336 (660)
..+ .++.+|..+.+..++++.
T Consensus 164 ~eL--e~~~~a~nw~ee~~~~d~ 184 (390)
T KOG0551|consen 164 LEL--ERFAEAVNWCEEGLQIDD 184 (390)
T ss_pred HHH--HHHHHHHHHHhhhhhhhH
Confidence 555 555555555555555443
No 251
>KOG0551 consensus Hsp90 co-chaperone CNS1 (contains TPR repeats) [Posttranslational modification, protein turnover, chaperones]
Probab=97.25 E-value=0.0026 Score=63.31 Aligned_cols=102 Identities=19% Similarity=0.141 Sum_probs=92.9
Q ss_pred HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCc----HHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHH
Q 006120 200 LPQIYVNLGIALEGEGMVLSACEYYRESAILCPTH----FRALKLLGSALFGVGEYRAAVKALEEAIFIKPDYADAHCDL 275 (660)
Q Consensus 200 ~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~----~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l 275 (660)
.+.-+-.-|+-|.+..+|..|+..|.++|+..-.+ +..|.+.+.+....|+|..|+.-..+++.++|.+..+++.=
T Consensus 80 ~Aen~KeeGN~~fK~Kryk~A~~~Yt~Glk~kc~D~dlnavLY~NRAAa~~~l~NyRs~l~Dcs~al~~~P~h~Ka~~R~ 159 (390)
T KOG0551|consen 80 QAENYKEEGNEYFKEKRYKDAVESYTEGLKKKCADPDLNAVLYTNRAAAQLYLGNYRSALNDCSAALKLKPTHLKAYIRG 159 (390)
T ss_pred HHHHHHHHhHHHHHhhhHHHHHHHHHHHHhhcCCCccHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHhcCcchhhhhhhh
Confidence 67788889999999999999999999999975443 56789999999999999999999999999999999999999
Q ss_pred HHHHHhCCChHHHHHHHHHHHHhCCC
Q 006120 276 ASALHAMGEDERAIEVFQKAIDLKPG 301 (660)
Q Consensus 276 a~~~~~~g~~~~A~~~~~~al~~~p~ 301 (660)
|.|+..+.++.+|...++..+.++..
T Consensus 160 Akc~~eLe~~~~a~nw~ee~~~~d~e 185 (390)
T KOG0551|consen 160 AKCLLELERFAEAVNWCEEGLQIDDE 185 (390)
T ss_pred hHHHHHHHHHHHHHHHHhhhhhhhHH
Confidence 99999999999999999998776544
No 252
>PF10300 DUF3808: Protein of unknown function (DUF3808); InterPro: IPR019412 This entry represents a family of proteins conserved from fungi to humans. In humans this protein is expressed in primary breast carcinomas but not in normal breast tissue, and has a putative eukaryotic RNP-1 RNA binding region and a candidate anchoring transmembrane domain. The human protein is coordinately regulated with oestrogen receptor, but is not necessarily oestradiol-responsive []. Members of this family carry a tetratricopeptide repeat (IPR013105 from INTERPRO) at their C terminus.
Probab=97.24 E-value=0.013 Score=64.10 Aligned_cols=166 Identities=17% Similarity=0.072 Sum_probs=119.4
Q ss_pred HHHHHcCCHHHHHHHHHHHHHHhccCCCchhchHHHHHHHHHHHHH----HCCCHHHHHHHHHHHHHhCCCcHHHHHHHH
Q 006120 167 NCLYVLGRYREAKEEYLLALEAAETGGNQWAYLLPQIYVNLGIALE----GEGMVLSACEYYRESAILCPTHFRALKLLG 242 (660)
Q Consensus 167 ~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~la~~~~----~~g~~~~A~~~~~~al~~~p~~~~~~~~lg 242 (660)
.+.--.|+-+.++..+.++.+ .++.......+..-.|+.....+. .....+.|.+.+....+..|+.+-.++..|
T Consensus 196 ~~vGF~gdR~~GL~~L~~~~~-~~~i~~~la~L~LL~y~~~~~~~~~~~~~~~~~~~a~~lL~~~~~~yP~s~lfl~~~g 274 (468)
T PF10300_consen 196 SFVGFSGDRELGLRLLWEASK-SENIRSPLAALVLLWYHLVVPSFLGIDGEDVPLEEAEELLEEMLKRYPNSALFLFFEG 274 (468)
T ss_pred hhcCcCCcHHHHHHHHHHHhc-cCCcchHHHHHHHHHHHHHHHHHcCCcccCCCHHHHHHHHHHHHHhCCCcHHHHHHHH
Confidence 334456899999999999876 333222111111112222222222 245778899999999999999999999999
Q ss_pred HHHHHCCCHHHHHHHHHHHHHhCCCC----HHHHHHHHHHHHhCCChHHHHHHHHHHHHhCCCC-HHHHHHHHHHHHHhc
Q 006120 243 SALFGVGEYRAAVKALEEAIFIKPDY----ADAHCDLASALHAMGEDERAIEVFQKAIDLKPGH-VDALYNLGGLYMDLG 317 (660)
Q Consensus 243 ~~~~~~g~~~~A~~~~~~al~~~p~~----~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~-~~a~~~La~~~~~~~ 317 (660)
.++...|+.++|++.|++++.....- .-.++.+|.++..+++|++|..++.+..+.+.-. .-..+..|.++...
T Consensus 275 R~~~~~g~~~~Ai~~~~~a~~~q~~~~Ql~~l~~~El~w~~~~~~~w~~A~~~f~~L~~~s~WSka~Y~Y~~a~c~~~l- 353 (468)
T PF10300_consen 275 RLERLKGNLEEAIESFERAIESQSEWKQLHHLCYFELAWCHMFQHDWEEAAEYFLRLLKESKWSKAFYAYLAAACLLML- 353 (468)
T ss_pred HHHHHhcCHHHHHHHHHHhccchhhHHhHHHHHHHHHHHHHHHHchHHHHHHHHHHHHhccccHHHHHHHHHHHHHHhh-
Confidence 99999999999999999988543222 4467889999999999999999999999876553 33455667777777
Q ss_pred CCCH-------HHHHHHHHHHHccc
Q 006120 318 AGET-------EEAKKALKEALKMT 335 (660)
Q Consensus 318 ~g~~-------~eA~~~~~~al~l~ 335 (660)
|+. ++|.++++++-.+.
T Consensus 354 -~~~~~~~~~~~~a~~l~~~vp~l~ 377 (468)
T PF10300_consen 354 -GREEEAKEHKKEAEELFRKVPKLK 377 (468)
T ss_pred -ccchhhhhhHHHHHHHHHHHHHHH
Confidence 888 66777776665443
No 253
>cd02339 ZZ_Mind_bomb Zinc finger, ZZ type. Zinc finger present in Drosophila Mind bomb (D-mib) and related proteins. The ZZ motif coordinates two zinc ions and most likely participates in ligand binding or molecular scaffolding. Mind bomb is an E3 ubiqitin ligase that has been shown to regulate signaling by the Notch ligand Delta in Drosophila melanogaster.
Probab=97.23 E-value=0.00017 Score=50.16 Aligned_cols=34 Identities=38% Similarity=0.893 Sum_probs=29.3
Q ss_pred ccccccc-ccccccccccccc-ccccccccccCCCC
Q 006120 591 HVCSVCR-YPIIGSRFKEMKS-HFSLCSQCYSEGKV 624 (660)
Q Consensus 591 ~~~~~~~-~~~~~~~~~~~~~-~~~~~~~~~~~~~~ 624 (660)
+.|..|+ -||+|.|||=..= +|.||.+|++.++-
T Consensus 1 i~Cd~C~~~~i~G~RykC~~C~dyDLC~~C~~~~~H 36 (45)
T cd02339 1 IICDTCRKQGIIGIRWKCAECPNYDLCTTCYHGDKH 36 (45)
T ss_pred CCCCCCCCCCcccCeEECCCCCCccchHHHhCCCCC
Confidence 4799999 8999999996654 89999999997653
No 254
>KOG1550 consensus Extracellular protein SEL-1 and related proteins [Cell wall/membrane/envelope biogenesis; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=97.22 E-value=0.073 Score=59.59 Aligned_cols=220 Identities=23% Similarity=0.217 Sum_probs=144.4
Q ss_pred HHHHHHHHHHHHHHHHhhcc--CcHHHHHHHHHHHHHHHHcC-----CHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHc
Q 006120 100 DYAVFVKELGVLRNRADGAR--SREEAFDGHMAIGRVLYEHQ-----LFKEALVSFKRACELQPTDVRPHFRAGNCLYVL 172 (660)
Q Consensus 100 ~~g~~~~Al~~l~~a~~~~~--~~~~~~~~~~~lg~~~~~~g-----~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~ 172 (660)
...+.++|+..++.+.+... .......+.+.+|.+|.... +++.|..+|.++.+.. ++.+.+.+|.++..-
T Consensus 261 ~~~d~e~a~~~l~~aa~~~~~~a~~~~~~a~~~lg~~Y~~g~~~~~~d~~~A~~~~~~aA~~g--~~~a~~~lg~~~~~g 338 (552)
T KOG1550|consen 261 VTQDLESAIEYLKLAAESFKKAATKGLPPAQYGLGRLYLQGLGVEKIDYEKALKLYTKAAELG--NPDAQYLLGVLYETG 338 (552)
T ss_pred ccccHHHHHHHHHHHHHHHHHHHhhcCCccccHHHHHHhcCCCCccccHHHHHHHHHHHHhcC--CchHHHHHHHHHHcC
Confidence 34577888888887766200 00001245678888888743 7788999999988775 567888888888876
Q ss_pred C---CHHHHHHHHHHHHHHhccCCCchhchHHHHHHHHHHHHHH----CCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHH
Q 006120 173 G---RYREAKEEYLLALEAAETGGNQWAYLLPQIYVNLGIALEG----EGMVLSACEYYRESAILCPTHFRALKLLGSAL 245 (660)
Q Consensus 173 g---~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~la~~~~~----~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~ 245 (660)
. ++..|.++|..|.... ...+.+.++.++.. .-+...|..++.++.+.. ++.+...++..+
T Consensus 339 ~~~~d~~~A~~yy~~Aa~~G----------~~~A~~~la~~y~~G~gv~r~~~~A~~~~k~aA~~g--~~~A~~~~~~~~ 406 (552)
T KOG1550|consen 339 TKERDYRRAFEYYSLAAKAG----------HILAIYRLALCYELGLGVERNLELAFAYYKKAAEKG--NPSAAYLLGAFY 406 (552)
T ss_pred CccccHHHHHHHHHHHHHcC----------ChHHHHHHHHHHHhCCCcCCCHHHHHHHHHHHHHcc--ChhhHHHHHHHH
Confidence 5 5789999999988765 45778888887764 347889999999998876 334333443333
Q ss_pred HHC-CCHHHHHHHHHHHHHhC----------------------------------------CCCHHHHHHHHHHHHhC--
Q 006120 246 FGV-GEYRAAVKALEEAIFIK----------------------------------------PDYADAHCDLASALHAM-- 282 (660)
Q Consensus 246 ~~~-g~~~~A~~~~~~al~~~----------------------------------------p~~~~~~~~la~~~~~~-- 282 (660)
... +++..+...+....++. ..+..+...+|.+|..-
T Consensus 407 ~~g~~~~~~~~~~~~~~a~~g~~~~q~~a~~l~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~g~~~a~~~lgd~y~~g~g 486 (552)
T KOG1550|consen 407 EYGVGRYDTALALYLYLAELGYEVAQSNAAYLLDQSEEDLFSRGVISTLERAFSLYSRAAAQGNADAILKLGDYYYYGLG 486 (552)
T ss_pred HHccccccHHHHHHHHHHHhhhhHHhhHHHHHHHhccccccccccccchhHHHHHHHHHHhccCHHHHhhhcceeeecCC
Confidence 222 44444444333322221 12344455666666543
Q ss_pred --CChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCC--CHHHHHHHHHHHHcccCC
Q 006120 283 --GEDERAIEVFQKAIDLKPGHVDALYNLGGLYMDLGAG--ETEEAKKALKEALKMTNR 337 (660)
Q Consensus 283 --g~~~~A~~~~~~al~~~p~~~~a~~~La~~~~~~~~g--~~~eA~~~~~~al~l~p~ 337 (660)
.+++.|...|.++.... +.+.+++|..+.. |.| .+..|.++|.++.+.+..
T Consensus 487 ~~~d~~~a~~~y~~a~~~~---~~~~~nlg~~~e~-g~g~~~~~~a~~~~~~~~~~~~~ 541 (552)
T KOG1550|consen 487 TGRDPEKAAAQYARASEQG---AQALFNLGYMHEH-GEGIKVLHLAKRYYDQASEEDSR 541 (552)
T ss_pred CCCChHHHHHHHHHHHHhh---hHHHhhhhhHHhc-CcCcchhHHHHHHHHHHHhcCch
Confidence 45788888888877666 7788888888764 322 268888888888877654
No 255
>PF07719 TPR_2: Tetratricopeptide repeat; InterPro: IPR013105 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]. It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. This repeat includes outlying Tetratricopeptide-like repeats (TPR) that are not matched by IPR001440 from INTERPRO.; PDB: 1XNF_B 3Q15_A 4ABN_A 1OUV_A 3U4T_A 3MA5_C 2KCV_A 2KCL_A 2XEV_A 3NF1_A ....
Probab=97.22 E-value=0.00082 Score=43.86 Aligned_cols=31 Identities=42% Similarity=0.599 Sum_probs=14.4
Q ss_pred HHHHHHHHHHhCCChHHHHHHHHHHHHhCCC
Q 006120 271 AHCDLASALHAMGEDERAIEVFQKAIDLKPG 301 (660)
Q Consensus 271 ~~~~la~~~~~~g~~~~A~~~~~~al~~~p~ 301 (660)
+|+.+|.++..+|++++|+.+|+++++++|+
T Consensus 3 ~~~~lg~~~~~~~~~~~A~~~~~~al~l~p~ 33 (34)
T PF07719_consen 3 AWYYLGQAYYQLGNYEEAIEYFEKALELDPN 33 (34)
T ss_dssp HHHHHHHHHHHTT-HHHHHHHHHHHHHHSTT
T ss_pred HHHHHHHHHHHhCCHHHHHHHHHHHHHHCcC
Confidence 4444444444444444444444444444443
No 256
>PF00515 TPR_1: Tetratricopeptide repeat; InterPro: IPR001440 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]. It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. The X-ray structure of a domain containing three TPRs from protein phosphatase 5 revealed that TPR adopts a helix-turn-helix arrangement, with adjacent TPR motifs packing in a parallel fashion, resulting in a spiral of repeating anti-parallel alpha-helices []. The two helices are denoted helix A and helix B. The packing angle between helix A and helix B is ~24 degrees; within a single TPR and generates a right-handed superhelical shape. Helix A interacts with helix B and with helix A' of the next TPR. Two protein surfaces are generated: the inner concave surface is contributed to mainly by residue on helices A, and the other surface presents residues from both helices A and B. ; GO: 0005515 protein binding; PDB: 3SF4_C 2LNI_A 1ELW_A 2C0M_A 1FCH_B 3R9A_B 2J9Q_A 2C0L_A 1KT1_A 3FWV_A ....
Probab=97.19 E-value=0.00088 Score=43.82 Aligned_cols=32 Identities=38% Similarity=0.432 Sum_probs=16.1
Q ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCC
Q 006120 202 QIYVNLGIALEGEGMVLSACEYYRESAILCPT 233 (660)
Q Consensus 202 ~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~ 233 (660)
.+|+++|.++..+|++++|+.+|+++++++|+
T Consensus 2 ~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~ 33 (34)
T PF00515_consen 2 EAYYNLGNAYFQLGDYEEALEYYQRALELDPD 33 (34)
T ss_dssp HHHHHHHHHHHHTT-HHHHHHHHHHHHHHSTT
T ss_pred HHHHHHHHHHHHhCCchHHHHHHHHHHHHCcC
Confidence 34455555555555555555555555555554
No 257
>COG0790 FOG: TPR repeat, SEL1 subfamily [General function prediction only]
Probab=97.18 E-value=0.12 Score=52.89 Aligned_cols=185 Identities=23% Similarity=0.222 Sum_probs=110.0
Q ss_pred HHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHc----CCHHHHHHHHHHHHHHhccCCCchhchHHHHHHHHHHHH
Q 006120 136 YEHQLFKEALVSFKRACELQPTDVRPHFRAGNCLYVL----GRYREAKEEYLLALEAAETGGNQWAYLLPQIYVNLGIAL 211 (660)
Q Consensus 136 ~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~----g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~la~~~ 211 (660)
...+++..|...+..+-.. ..+.....++.+|... .+..+|..+|+.+.+.. .+...+.+|.++
T Consensus 52 ~~~~~~~~a~~~~~~a~~~--~~~~a~~~l~~~y~~g~gv~~~~~~A~~~~~~~a~~g----------~~~a~~~lg~~~ 119 (292)
T COG0790 52 AYPPDYAKALKSYEKAAEL--GDAAALALLGQMYGAGKGVSRDKTKAADWYRCAAADG----------LAEALFNLGLMY 119 (292)
T ss_pred cccccHHHHHHHHHHhhhc--CChHHHHHHHHHHHhccCccccHHHHHHHHHHHhhcc----------cHHHHHhHHHHH
Confidence 3445566666666655542 2235555555555442 34556666666444322 445566666666
Q ss_pred HH----CCCHHHHHHHHHHHHHhCCCc-HHHHHHHHHHHHHCC-------CHHHHHHHHHHHHHhCCCCHHHHHHHHHHH
Q 006120 212 EG----EGMVLSACEYYRESAILCPTH-FRALKLLGSALFGVG-------EYRAAVKALEEAIFIKPDYADAHCDLASAL 279 (660)
Q Consensus 212 ~~----~g~~~~A~~~~~~al~~~p~~-~~~~~~lg~~~~~~g-------~~~~A~~~~~~al~~~p~~~~~~~~la~~~ 279 (660)
.. ..++.+|..+|+++.+..-.. ..+...++.++..-. +...|...|.++-... ++.+..++|.+|
T Consensus 120 ~~G~gv~~d~~~A~~~~~~Aa~~g~~~a~~~~~~l~~~~~~g~~~~~~~~~~~~A~~~~~~aa~~~--~~~a~~~lg~~y 197 (292)
T COG0790 120 ANGRGVPLDLVKALKYYEKAAKLGNVEAALAMYRLGLAYLSGLQALAVAYDDKKALYLYRKAAELG--NPDAQLLLGRMY 197 (292)
T ss_pred hcCCCcccCHHHHHHHHHHHHHcCChhHHHHHHHHHHHHHcChhhhcccHHHHhHHHHHHHHHHhc--CHHHHHHHHHHH
Confidence 55 336667777777766653332 233556666655431 2236777777776664 667777777777
Q ss_pred Hh----CCChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCC-------------CHHHHHHHHHHHHcccCC
Q 006120 280 HA----MGEDERAIEVFQKAIDLKPGHVDALYNLGGLYMDLGAG-------------ETEEAKKALKEALKMTNR 337 (660)
Q Consensus 280 ~~----~g~~~~A~~~~~~al~~~p~~~~a~~~La~~~~~~~~g-------------~~~eA~~~~~~al~l~p~ 337 (660)
.. ..++.+|..+|.++-+... ..+.+.++ ++...+.| +...|...+.++....+.
T Consensus 198 ~~G~Gv~~d~~~A~~wy~~Aa~~g~--~~a~~~~~-~~~~~g~g~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~ 269 (292)
T COG0790 198 EKGLGVPRDLKKAFRWYKKAAEQGD--GAACYNLG-LMYLNGEGVKKAAFLTAAKEEDKKQALEWLQKACELGFD 269 (292)
T ss_pred HcCCCCCcCHHHHHHHHHHHHHCCC--HHHHHHHH-HHHhcCCCchhhhhcccccCCCHHHHHHHHHHHHHcCCh
Confidence 54 3477888888888877765 67777777 44443212 777788888877766544
No 258
>cd02340 ZZ_NBR1_like Zinc finger, ZZ type. Zinc finger present in Drosophila ref(2)P, NBR1, Human sequestosome 1 and related proteins. The ZZ motif coordinates two zinc ions and most likely participates in ligand binding or molecular scaffolding. Drosophila ref(2)P appears to control the multiplication of sigma rhabdovirus. NBR1 (Next to BRCA1 gene 1 protein) interacts with fasciculation and elongation protein zeta-1 (FEZ1) and calcium and integrin binding protein (CIB), and may function in cell signalling pathways. Sequestosome 1 is a phosphotyrosine independent ligand for the Lck SH2 domain and binds noncovalently to ubiquitin via its UBA domain.
Probab=97.13 E-value=0.00024 Score=49.08 Aligned_cols=32 Identities=34% Similarity=0.936 Sum_probs=29.0
Q ss_pred cccccccccccccccccccc-ccccccccccCC
Q 006120 591 HVCSVCRYPIIGSRFKEMKS-HFSLCSQCYSEG 622 (660)
Q Consensus 591 ~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~ 622 (660)
++|..|.-||+|.|||=..= +|.||..||+.|
T Consensus 1 v~Cd~C~~~i~G~ry~C~~C~d~dLC~~C~~~~ 33 (43)
T cd02340 1 VICDGCQGPIVGVRYKCLVCPDYDLCESCEAKG 33 (43)
T ss_pred CCCCCCCCcCcCCeEECCCCCCccchHHhhCcC
Confidence 47999999999999996665 899999999988
No 259
>PF03704 BTAD: Bacterial transcriptional activator domain; InterPro: IPR005158 Found in the DNRI/REDD/AFSR family of regulators, this region of AFSR (P25941 from SWISSPROT) along with the C-terminal region is capable of independently directing actinorhodin production. It is important for the formation of secondary metabolites.; PDB: 2FF4_B 2FEZ_A.
Probab=97.13 E-value=0.014 Score=52.92 Aligned_cols=65 Identities=29% Similarity=0.412 Sum_probs=56.3
Q ss_pred cHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhCCChHHHHHHHHHHHHh
Q 006120 234 HFRALKLLGSALFGVGEYRAAVKALEEAIFIKPDYADAHCDLASALHAMGEDERAIEVFQKAIDL 298 (660)
Q Consensus 234 ~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~ 298 (660)
...+...++..+...|++++|+..+++++..+|-+-.+|..+..+|...|+..+|+..|++....
T Consensus 61 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~l~~dP~~E~~~~~lm~~~~~~g~~~~A~~~Y~~~~~~ 125 (146)
T PF03704_consen 61 YLDALERLAEALLEAGDYEEALRLLQRALALDPYDEEAYRLLMRALAAQGRRAEALRVYERYRRR 125 (146)
T ss_dssp HHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHSTT-HHHHHHHHHHHHHTT-HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhccCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHCcCHHHHHHHHHHHHHH
Confidence 34577788999999999999999999999999999999999999999999999999999887543
No 260
>PF07719 TPR_2: Tetratricopeptide repeat; InterPro: IPR013105 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]. It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. This repeat includes outlying Tetratricopeptide-like repeats (TPR) that are not matched by IPR001440 from INTERPRO.; PDB: 1XNF_B 3Q15_A 4ABN_A 1OUV_A 3U4T_A 3MA5_C 2KCV_A 2KCL_A 2XEV_A 3NF1_A ....
Probab=97.11 E-value=0.0013 Score=42.82 Aligned_cols=31 Identities=32% Similarity=0.647 Sum_probs=15.1
Q ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHhCCC
Q 006120 237 ALKLLGSALFGVGEYRAAVKALEEAIFIKPD 267 (660)
Q Consensus 237 ~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~ 267 (660)
++..+|.++..+|++++|+..++++++++|+
T Consensus 3 ~~~~lg~~~~~~~~~~~A~~~~~~al~l~p~ 33 (34)
T PF07719_consen 3 AWYYLGQAYYQLGNYEEAIEYFEKALELDPN 33 (34)
T ss_dssp HHHHHHHHHHHTT-HHHHHHHHHHHHHHSTT
T ss_pred HHHHHHHHHHHhCCHHHHHHHHHHHHHHCcC
Confidence 4444555555555555555555555555444
No 261
>COG2976 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=97.08 E-value=0.023 Score=52.73 Aligned_cols=108 Identities=15% Similarity=0.090 Sum_probs=89.5
Q ss_pred CchHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHhhccCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHH
Q 006120 83 TSAEISEKRVFWEESTHDYAVFVKELGVLRNRADGARSREEAFDGHMAIGRVLYEHQLFKEALVSFKRACELQPTDVRPH 162 (660)
Q Consensus 83 ~~~~~~~~~~~l~~~~~~~g~~~~Al~~l~~a~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~ 162 (660)
.........+.++....+.+++++|+..++.++....+.....-+-..+|.+...+|.+++|+..+....... -.+...
T Consensus 84 ~t~Ya~laaL~lAk~~ve~~~~d~A~aqL~~~l~~t~De~lk~l~~lRLArvq~q~~k~D~AL~~L~t~~~~~-w~~~~~ 162 (207)
T COG2976 84 KTIYAVLAALELAKAEVEANNLDKAEAQLKQALAQTKDENLKALAALRLARVQLQQKKADAALKTLDTIKEES-WAAIVA 162 (207)
T ss_pred ccHHHHHHHHHHHHHHHhhccHHHHHHHHHHHHccchhHHHHHHHHHHHHHHHHHhhhHHHHHHHHhcccccc-HHHHHH
Confidence 5556666777888999999999999999999998777776667778899999999999999999887643221 124456
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHHhcc
Q 006120 163 FRAGNCLYVLGRYREAKEEYLLALEAAET 191 (660)
Q Consensus 163 ~~la~~~~~~g~~~~A~~~~~~al~~~p~ 191 (660)
...|.++...|+-++|...|+++++..++
T Consensus 163 elrGDill~kg~k~~Ar~ay~kAl~~~~s 191 (207)
T COG2976 163 ELRGDILLAKGDKQEARAAYEKALESDAS 191 (207)
T ss_pred HHhhhHHHHcCchHHHHHHHHHHHHccCC
Confidence 67899999999999999999999998754
No 262
>PF02259 FAT: FAT domain; InterPro: IPR003151 The FAT domain is a domain present in the PIK-related kinases. Members of the family of PIK-related kinases may act as intracellular sensors that govern radial and horizontal pathways [].; GO: 0005515 protein binding
Probab=97.07 E-value=0.2 Score=52.57 Aligned_cols=134 Identities=19% Similarity=0.164 Sum_probs=77.2
Q ss_pred HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCC----cHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCC-C--HHHH
Q 006120 200 LPQIYVNLGIALEGEGMVLSACEYYRESAILCPT----HFRALKLLGSALFGVGEYRAAVKALEEAIFIKPD-Y--ADAH 272 (660)
Q Consensus 200 ~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~----~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~-~--~~~~ 272 (660)
....+...+.+..+.|+++.|...+.++....+. .+.+....+.++...|+..+|+..++..+..... . ....
T Consensus 145 ~~~~~l~~a~~aRk~g~~~~A~~~l~~~~~~~~~~~~~~~~v~~e~akllw~~g~~~~Ai~~L~~~~~~~~~~~~~~~~~ 224 (352)
T PF02259_consen 145 LAETWLKFAKLARKAGNFQLALSALNRLFQLNPSSESLLPRVFLEYAKLLWAQGEQEEAIQKLRELLKCRLSKNIDSISN 224 (352)
T ss_pred HHHHHHHHHHHHHHCCCcHHHHHHHHHHhccCCcccCCCcchHHHHHHHHHHcCCHHHHHHHHHHHHHHHhhhccccccH
Confidence 5677788888888888888888888887765421 4566677788888888888888888777762211 1 0111
Q ss_pred HHHHHHHHh--CCChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHh----cCCCHHHHHHHHHHHHcccCCh
Q 006120 273 CDLASALHA--MGEDERAIEVFQKAIDLKPGHVDALYNLGGLYMDL----GAGETEEAKKALKEALKMTNRV 338 (660)
Q Consensus 273 ~~la~~~~~--~g~~~~A~~~~~~al~~~p~~~~a~~~La~~~~~~----~~g~~~eA~~~~~~al~l~p~~ 338 (660)
..+...... ............ ....+.++..+|...... ..+..+++...|++++++.|+.
T Consensus 225 ~~~~~~~~~~~~~~~~~~~~~~~-----~~~~a~~~l~~a~w~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~ 291 (352)
T PF02259_consen 225 AELKSGLLESLEVISSTNLDKES-----KELKAKAFLLLAKWLDELYSKLSSESSDEILKYYKEATKLDPSW 291 (352)
T ss_pred HHHhhccccccccccccchhhhh-----HHHHHHHHHHHHHHHHhhccccccccHHHHHHHHHHHHHhChhH
Confidence 111100000 000000000000 001134556666655544 4478899999999999998863
No 263
>KOG1550 consensus Extracellular protein SEL-1 and related proteins [Cell wall/membrane/envelope biogenesis; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=96.98 E-value=0.1 Score=58.51 Aligned_cols=173 Identities=19% Similarity=0.116 Sum_probs=124.5
Q ss_pred HHHHHHHHHHHHhhccCcHHHHHHHHHHHHHHHH-----cCCHHHHHHHHHHHHHh-----CCCCHHHHHHHHHHHHHcC
Q 006120 104 FVKELGVLRNRADGARSREEAFDGHMAIGRVLYE-----HQLFKEALVSFKRACEL-----QPTDVRPHFRAGNCLYVLG 173 (660)
Q Consensus 104 ~~~Al~~l~~a~~~~~~~~~~~~~~~~lg~~~~~-----~g~~~~A~~~~~~al~~-----~p~~~~~~~~la~~~~~~g 173 (660)
...+...++.+.+... ..+...+|.++.. ..|.+.|+.+|+.+.+. ....+.+.+.+|.+|....
T Consensus 228 ~~~a~~~~~~~a~~g~-----~~a~~~~g~~y~~G~~g~~~d~e~a~~~l~~aa~~~~~~a~~~~~~a~~~lg~~Y~~g~ 302 (552)
T KOG1550|consen 228 LSEAFKYYREAAKLGH-----SEAQYALGICYLAGTYGVTQDLESAIEYLKLAAESFKKAATKGLPPAQYGLGRLYLQGL 302 (552)
T ss_pred hhHHHHHHHHHHhhcc-----hHHHHHHHHHHhhccccccccHHHHHHHHHHHHHHHHHHHhhcCCccccHHHHHHhcCC
Confidence 4566666666655332 3556677777765 36999999999999871 1225668889999998853
Q ss_pred -----CHHHHHHHHHHHHHHhccCCCchhchHHHHHHHHHHHHHHCC---CHHHHHHHHHHHHHhCCCcHHHHHHHHHHH
Q 006120 174 -----RYREAKEEYLLALEAAETGGNQWAYLLPQIYVNLGIALEGEG---MVLSACEYYRESAILCPTHFRALKLLGSAL 245 (660)
Q Consensus 174 -----~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~la~~~~~~g---~~~~A~~~~~~al~~~p~~~~~~~~lg~~~ 245 (660)
++..|..+|.++.... .+.+.+.+|.++..-. ++..|..+|..|... .+..+.+.++.+|
T Consensus 303 ~~~~~d~~~A~~~~~~aA~~g----------~~~a~~~lg~~~~~g~~~~d~~~A~~yy~~Aa~~--G~~~A~~~la~~y 370 (552)
T KOG1550|consen 303 GVEKIDYEKALKLYTKAAELG----------NPDAQYLLGVLYETGTKERDYRRAFEYYSLAAKA--GHILAIYRLALCY 370 (552)
T ss_pred CCccccHHHHHHHHHHHHhcC----------CchHHHHHHHHHHcCCccccHHHHHHHHHHHHHc--CChHHHHHHHHHH
Confidence 6788999999999876 4477888998887665 678999999998664 6788888999888
Q ss_pred HHC----CCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhC-CChHHHHHHHHHH
Q 006120 246 FGV----GEYRAAVKALEEAIFIKPDYADAHCDLASALHAM-GEDERAIEVFQKA 295 (660)
Q Consensus 246 ~~~----g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~-g~~~~A~~~~~~a 295 (660)
..- -+...|..++.++.++. .+.+...++..+..- +.+..+...+...
T Consensus 371 ~~G~gv~r~~~~A~~~~k~aA~~g--~~~A~~~~~~~~~~g~~~~~~~~~~~~~~ 423 (552)
T KOG1550|consen 371 ELGLGVERNLELAFAYYKKAAEKG--NPSAAYLLGAFYEYGVGRYDTALALYLYL 423 (552)
T ss_pred HhCCCcCCCHHHHHHHHHHHHHcc--ChhhHHHHHHHHHHccccccHHHHHHHHH
Confidence 753 57899999999999987 445445444444322 5555555444333
No 264
>cd02345 ZZ_dah Zinc finger, ZZ type. Zinc finger present in Drosophila dah and related proteins. The ZZ motif coordinates two zinc ions and most likely participates in ligand binding or molecular scaffolding. Dah (discontinuous actin hexagon) is a membrane associated protein essential for cortical furrow formation in Drosophila.
Probab=96.98 E-value=0.00031 Score=50.13 Aligned_cols=35 Identities=40% Similarity=0.820 Sum_probs=29.9
Q ss_pred cccccccc-ccccccccccc-cccccccccccCCCCC
Q 006120 591 HVCSVCRY-PIIGSRFKEMK-SHFSLCSQCYSEGKVP 625 (660)
Q Consensus 591 ~~~~~~~~-~~~~~~~~~~~-~~~~~~~~~~~~~~~~ 625 (660)
++|++|+- ||.|.||+=+. .+|+||..||+.|...
T Consensus 1 ~~C~~C~~~~i~g~R~~C~~C~dydLC~~Cf~~~~~~ 37 (49)
T cd02345 1 LSCSACRKQDISGIRFPCQVCRDYSLCLGCYTKGRET 37 (49)
T ss_pred CcCCCCCCCCceEeeEECCCCCCcCchHHHHhCCCcC
Confidence 47999999 99999998543 6899999999998644
No 265
>KOG1308 consensus Hsp70-interacting protein Hip/Transient component of progesterone receptor complexes and an Hsp70-binding protein [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=96.98 E-value=0.0005 Score=68.62 Aligned_cols=95 Identities=24% Similarity=0.218 Sum_probs=72.8
Q ss_pred HHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhCCChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCCCHHH
Q 006120 244 ALFGVGEYRAAVKALEEAIFIKPDYADAHCDLASALHAMGEDERAIEVFQKAIDLKPGHVDALYNLGGLYMDLGAGETEE 323 (660)
Q Consensus 244 ~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~La~~~~~~~~g~~~e 323 (660)
-.+..|.++.|++.+..++.++|.....+...+.+++++++...|+.-+..+++++|+....|-..+.+...+ |++++
T Consensus 123 eAln~G~~~~ai~~~t~ai~lnp~~a~l~~kr~sv~lkl~kp~~airD~d~A~ein~Dsa~~ykfrg~A~rll--g~~e~ 200 (377)
T KOG1308|consen 123 EALNDGEFDTAIELFTSAIELNPPLAILYAKRASVFLKLKKPNAAIRDCDFAIEINPDSAKGYKFRGYAERLL--GNWEE 200 (377)
T ss_pred HHhcCcchhhhhcccccccccCCchhhhcccccceeeeccCCchhhhhhhhhhccCcccccccchhhHHHHHh--hchHH
Confidence 3344577888888888888888888888888888888888888888888888888888777777777777777 78888
Q ss_pred HHHHHHHHHcccCChhH
Q 006120 324 AKKALKEALKMTNRVEL 340 (660)
Q Consensus 324 A~~~~~~al~l~p~~~~ 340 (660)
|...+..+.+++-+.+.
T Consensus 201 aa~dl~~a~kld~dE~~ 217 (377)
T KOG1308|consen 201 AAHDLALACKLDYDEAN 217 (377)
T ss_pred HHHHHHHHHhccccHHH
Confidence 88888888877654333
No 266
>COG2976 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=96.97 E-value=0.023 Score=52.68 Aligned_cols=100 Identities=14% Similarity=0.067 Sum_probs=61.7
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHhccCCCchhchHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCC-cHHHHH
Q 006120 161 PHFRAGNCLYVLGRYREAKEEYLLALEAAETGGNQWAYLLPQIYVNLGIALEGEGMVLSACEYYRESAILCPT-HFRALK 239 (660)
Q Consensus 161 ~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~ 239 (660)
+...+|..+...+++++|+..++.++....+.. +.+.+-.+++.+..++|.+++|+..+..... +. .+..-.
T Consensus 91 aaL~lAk~~ve~~~~d~A~aqL~~~l~~t~De~-----lk~l~~lRLArvq~q~~k~D~AL~~L~t~~~--~~w~~~~~e 163 (207)
T COG2976 91 AALELAKAEVEANNLDKAEAQLKQALAQTKDEN-----LKALAALRLARVQLQQKKADAALKTLDTIKE--ESWAAIVAE 163 (207)
T ss_pred HHHHHHHHHHhhccHHHHHHHHHHHHccchhHH-----HHHHHHHHHHHHHHHhhhHHHHHHHHhcccc--ccHHHHHHH
Confidence 344566677777777777777777765433211 1445666777777777777777766654321 11 122345
Q ss_pred HHHHHHHHCCCHHHHHHHHHHHHHhCCC
Q 006120 240 LLGSALFGVGEYRAAVKALEEAIFIKPD 267 (660)
Q Consensus 240 ~lg~~~~~~g~~~~A~~~~~~al~~~p~ 267 (660)
..|.++...|+.++|...|+++++..++
T Consensus 164 lrGDill~kg~k~~Ar~ay~kAl~~~~s 191 (207)
T COG2976 164 LRGDILLAKGDKQEARAAYEKALESDAS 191 (207)
T ss_pred HhhhHHHHcCchHHHHHHHHHHHHccCC
Confidence 5677777777777777777777777543
No 267
>KOG1308 consensus Hsp70-interacting protein Hip/Transient component of progesterone receptor complexes and an Hsp70-binding protein [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=96.95 E-value=0.00072 Score=67.49 Aligned_cols=119 Identities=21% Similarity=0.172 Sum_probs=96.3
Q ss_pred HHHHCCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhCCChHHHH
Q 006120 210 ALEGEGMVLSACEYYRESAILCPTHFRALKLLGSALFGVGEYRAAVKALEEAIFIKPDYADAHCDLASALHAMGEDERAI 289 (660)
Q Consensus 210 ~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~ 289 (660)
-....|.+++|++.+..++.++|..+..+...+.++.++++...|+.-+..++.++|+...-|-..|.....+|++++|.
T Consensus 123 eAln~G~~~~ai~~~t~ai~lnp~~a~l~~kr~sv~lkl~kp~~airD~d~A~ein~Dsa~~ykfrg~A~rllg~~e~aa 202 (377)
T KOG1308|consen 123 EALNDGEFDTAIELFTSAIELNPPLAILYAKRASVFLKLKKPNAAIRDCDFAIEINPDSAKGYKFRGYAERLLGNWEEAA 202 (377)
T ss_pred HHhcCcchhhhhcccccccccCCchhhhcccccceeeeccCCchhhhhhhhhhccCcccccccchhhHHHHHhhchHHHH
Confidence 34567889999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHhCCCCHHHHHHHHHHHHHhcCCCHHHHHHHHHHH
Q 006120 290 EVFQKAIDLKPGHVDALYNLGGLYMDLGAGETEEAKKALKEA 331 (660)
Q Consensus 290 ~~~~~al~~~p~~~~a~~~La~~~~~~~~g~~~eA~~~~~~a 331 (660)
..+..+.+++-+ ..+-..+-.+.-.. +..++-...+++.
T Consensus 203 ~dl~~a~kld~d-E~~~a~lKeV~p~a--~ki~e~~~k~er~ 241 (377)
T KOG1308|consen 203 HDLALACKLDYD-EANSATLKEVFPNA--GKIEEHRRKYERA 241 (377)
T ss_pred HHHHHHHhcccc-HHHHHHHHHhccch--hhhhhchhHHHHH
Confidence 999999988644 22223333333333 3444444444443
No 268
>cd02341 ZZ_ZZZ3 Zinc finger, ZZ type. Zinc finger present in ZZZ3 (ZZ finger containing 3) and related proteins. The ZZ motif coordinates two zinc ions and most likely participates in ligand binding or molecular scaffolding.
Probab=96.94 E-value=0.00032 Score=49.51 Aligned_cols=33 Identities=33% Similarity=0.871 Sum_probs=28.8
Q ss_pred cccccccc-cccccccccccc---ccccccccccCCC
Q 006120 591 HVCSVCRY-PIIGSRFKEMKS---HFSLCSQCYSEGK 623 (660)
Q Consensus 591 ~~~~~~~~-~~~~~~~~~~~~---~~~~~~~~~~~~~ 623 (660)
.+|..|+- ||+|.||+=..= +|.||..||..|.
T Consensus 1 y~Cd~C~~~pI~G~R~~C~~C~~~d~DlC~~C~~~~~ 37 (48)
T cd02341 1 FKCDSCGIEPIPGTRYHCSECDDGDFDLCQDCVVKGE 37 (48)
T ss_pred CCCCCCCCCccccceEECCCCCCCCCccCHHHHhCcC
Confidence 36999997 999999996654 5999999999996
No 269
>COG0790 FOG: TPR repeat, SEL1 subfamily [General function prediction only]
Probab=96.93 E-value=0.18 Score=51.53 Aligned_cols=166 Identities=17% Similarity=0.045 Sum_probs=123.3
Q ss_pred HHHHHHHHHHHHHHHHHhhccCcHHHHHHHHHHHHHHHHc----CCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH---
Q 006120 99 HDYAVFVKELGVLRNRADGARSREEAFDGHMAIGRVLYEH----QLFKEALVSFKRACELQPTDVRPHFRAGNCLYV--- 171 (660)
Q Consensus 99 ~~~g~~~~Al~~l~~a~~~~~~~~~~~~~~~~lg~~~~~~----g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~--- 171 (660)
...+.+..++..+..+..... ..+...++..+... .+..+|..+|+.+. ...++.+.+.+|.+|..
T Consensus 52 ~~~~~~~~a~~~~~~a~~~~~-----~~a~~~l~~~y~~g~gv~~~~~~A~~~~~~~a--~~g~~~a~~~lg~~~~~G~g 124 (292)
T COG0790 52 AYPPDYAKALKSYEKAAELGD-----AAALALLGQMYGAGKGVSRDKTKAADWYRCAA--ADGLAEALFNLGLMYANGRG 124 (292)
T ss_pred cccccHHHHHHHHHHhhhcCC-----hHHHHHHHHHHHhccCccccHHHHHHHHHHHh--hcccHHHHHhHHHHHhcCCC
Confidence 345667777777776655211 15666777777653 47889999999544 45678899999999987
Q ss_pred -cCCHHHHHHHHHHHHHHhccCCCchhchHHHHHHHHHHHHHHCC-------CHHHHHHHHHHHHHhCCCcHHHHHHHHH
Q 006120 172 -LGRYREAKEEYLLALEAAETGGNQWAYLLPQIYVNLGIALEGEG-------MVLSACEYYRESAILCPTHFRALKLLGS 243 (660)
Q Consensus 172 -~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~la~~~~~~g-------~~~~A~~~~~~al~~~p~~~~~~~~lg~ 243 (660)
..+..+|..+|+++.+..... -..+.+.+|..+..-. +...|...|.++-... +..+...+|.
T Consensus 125 v~~d~~~A~~~~~~Aa~~g~~~-------a~~~~~~l~~~~~~g~~~~~~~~~~~~A~~~~~~aa~~~--~~~a~~~lg~ 195 (292)
T COG0790 125 VPLDLVKALKYYEKAAKLGNVE-------AALAMYRLGLAYLSGLQALAVAYDDKKALYLYRKAAELG--NPDAQLLLGR 195 (292)
T ss_pred cccCHHHHHHHHHHHHHcCChh-------HHHHHHHHHHHHHcChhhhcccHHHHhHHHHHHHHHHhc--CHHHHHHHHH
Confidence 459999999999999986441 1344777787776642 2337889999887765 7888999998
Q ss_pred HHHH----CCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhCC
Q 006120 244 ALFG----VGEYRAAVKALEEAIFIKPDYADAHCDLASALHAMG 283 (660)
Q Consensus 244 ~~~~----~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g 283 (660)
+|.. ..++.+|...|.++-+... ....+.++ ++...|
T Consensus 196 ~y~~G~Gv~~d~~~A~~wy~~Aa~~g~--~~a~~~~~-~~~~~g 236 (292)
T COG0790 196 MYEKGLGVPRDLKKAFRWYKKAAEQGD--GAACYNLG-LMYLNG 236 (292)
T ss_pred HHHcCCCCCcCHHHHHHHHHHHHHCCC--HHHHHHHH-HHHhcC
Confidence 8865 3489999999999999876 88888999 666666
No 270
>COG3118 Thioredoxin domain-containing protein [Posttranslational modification, protein turnover, chaperones]
Probab=96.91 E-value=0.041 Score=54.44 Aligned_cols=149 Identities=20% Similarity=0.174 Sum_probs=100.8
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhccCCCchhchHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCc-HHH
Q 006120 159 VRPHFRAGNCLYVLGRYREAKEEYLLALEAAETGGNQWAYLLPQIYVNLGIALEGEGMVLSACEYYRESAILCPTH-FRA 237 (660)
Q Consensus 159 ~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~-~~~ 237 (660)
.+.-+.-+.-....|++.+|...+..++...|. ...+...++.++...|+.+.|...+...-....+. ...
T Consensus 134 ~e~~~~~~~~~~~~e~~~~a~~~~~~al~~~~~--------~~~~~~~la~~~l~~g~~e~A~~iL~~lP~~~~~~~~~~ 205 (304)
T COG3118 134 EEEALAEAKELIEAEDFGEAAPLLKQALQAAPE--------NSEAKLLLAECLLAAGDVEAAQAILAALPLQAQDKAAHG 205 (304)
T ss_pred HHHHHHHhhhhhhccchhhHHHHHHHHHHhCcc--------cchHHHHHHHHHHHcCChHHHHHHHHhCcccchhhHHHH
Confidence 344455567778889999999999999999888 66788889999999999988888776532211111 111
Q ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhCCChHHHHHHHHHHHHhCCC--CHHHHHHHHHHHHH
Q 006120 238 LKLLGSALFGVGEYRAAVKALEEAIFIKPDYADAHCDLASALHAMGEDERAIEVFQKAIDLKPG--HVDALYNLGGLYMD 315 (660)
Q Consensus 238 ~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~--~~~a~~~La~~~~~ 315 (660)
+......+.+.....+ ...+++.+..+|++..+-+.+|..+...|+.++|.+.+-..+..+-. +..+...+-.++..
T Consensus 206 l~a~i~ll~qaa~~~~-~~~l~~~~aadPdd~~aa~~lA~~~~~~g~~e~Ale~Ll~~l~~d~~~~d~~~Rk~lle~f~~ 284 (304)
T COG3118 206 LQAQIELLEQAAATPE-IQDLQRRLAADPDDVEAALALADQLHLVGRNEAALEHLLALLRRDRGFEDGEARKTLLELFEA 284 (304)
T ss_pred HHHHHHHHHHHhcCCC-HHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcccccCcHHHHHHHHHHHh
Confidence 1111122222222222 23445566778999999999999999999999999888888877543 35566666666666
Q ss_pred h
Q 006120 316 L 316 (660)
Q Consensus 316 ~ 316 (660)
.
T Consensus 285 ~ 285 (304)
T COG3118 285 F 285 (304)
T ss_pred c
Confidence 6
No 271
>KOG3616 consensus Selective LIM binding factor [Transcription]
Probab=96.88 E-value=0.19 Score=55.07 Aligned_cols=214 Identities=21% Similarity=0.134 Sum_probs=122.2
Q ss_pred HHHHHHHHHHHHHHHHHhhccCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHH
Q 006120 99 HDYAVFVKELGVLRNRADGARSREEAFDGHMAIGRVLYEHQLFKEALVSFKRACELQPTDVRPHFRAGNCLYVLGRYREA 178 (660)
Q Consensus 99 ~~~g~~~~Al~~l~~a~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A 178 (660)
..-..+.+|+..+....++. .....|-.++..|...|+|+.|.++|.++-. ....-..|.+.|+|.+|
T Consensus 743 i~akew~kai~ildniqdqk----~~s~yy~~iadhyan~~dfe~ae~lf~e~~~--------~~dai~my~k~~kw~da 810 (1636)
T KOG3616|consen 743 IGAKEWKKAISILDNIQDQK----TASGYYGEIADHYANKGDFEIAEELFTEADL--------FKDAIDMYGKAGKWEDA 810 (1636)
T ss_pred hhhhhhhhhHhHHHHhhhhc----cccccchHHHHHhccchhHHHHHHHHHhcch--------hHHHHHHHhccccHHHH
Confidence 33344555555544332221 1123456678889999999999999876522 22234567778888888
Q ss_pred HHHHHHHHHHhccCCCchhchHHHHHHHHHHHHHHCCCHHHHHHH-------------HHHH------HH----hCCCc-
Q 006120 179 KEEYLLALEAAETGGNQWAYLLPQIYVNLGIALEGEGMVLSACEY-------------YRES------AI----LCPTH- 234 (660)
Q Consensus 179 ~~~~~~al~~~p~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~-------------~~~a------l~----~~p~~- 234 (660)
.++-++... |.. ....|...+.-+...|++.+|.+. |.+. +. ..|+.
T Consensus 811 ~kla~e~~~--~e~-------t~~~yiakaedldehgkf~eaeqlyiti~~p~~aiqmydk~~~~ddmirlv~k~h~d~l 881 (1636)
T KOG3616|consen 811 FKLAEECHG--PEA-------TISLYIAKAEDLDEHGKFAEAEQLYITIGEPDKAIQMYDKHGLDDDMIRLVEKHHGDHL 881 (1636)
T ss_pred HHHHHHhcC--chh-------HHHHHHHhHHhHHhhcchhhhhheeEEccCchHHHHHHHhhCcchHHHHHHHHhChhhh
Confidence 777666542 221 345555666666666666555444 3332 11 12222
Q ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHh------CCC-----------------CHH-----HHH------HHHHHHH
Q 006120 235 FRALKLLGSALFGVGEYRAAVKALEEAIFI------KPD-----------------YAD-----AHC------DLASALH 280 (660)
Q Consensus 235 ~~~~~~lg~~~~~~g~~~~A~~~~~~al~~------~p~-----------------~~~-----~~~------~la~~~~ 280 (660)
.+....+|.-+...|+..+|...|-++-.. ... +.. .|. .-..++.
T Consensus 882 ~dt~~~f~~e~e~~g~lkaae~~flea~d~kaavnmyk~s~lw~dayriaktegg~n~~k~v~flwaksiggdaavklln 961 (1636)
T KOG3616|consen 882 HDTHKHFAKELEAEGDLKAAEEHFLEAGDFKAAVNMYKASELWEDAYRIAKTEGGANAEKHVAFLWAKSIGGDAAVKLLN 961 (1636)
T ss_pred hHHHHHHHHHHHhccChhHHHHHHHhhhhHHHHHHHhhhhhhHHHHHHHHhccccccHHHHHHHHHHHhhCcHHHHHHHH
Confidence 345667777777888888887776654322 111 100 010 0112334
Q ss_pred hCCChHHHHHHH------HHHHHh-----CCCCHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHccc
Q 006120 281 AMGEDERAIEVF------QKAIDL-----KPGHVDALYNLGGLYMDLGAGETEEAKKALKEALKMT 335 (660)
Q Consensus 281 ~~g~~~~A~~~~------~~al~~-----~p~~~~a~~~La~~~~~~~~g~~~eA~~~~~~al~l~ 335 (660)
+.|-.++|+... +-+..+ ....+..+..++..+... |++++|-++|-++++++
T Consensus 962 k~gll~~~id~a~d~~afd~afdlari~~k~k~~~vhlk~a~~lede--gk~edaskhyveaikln 1025 (1636)
T KOG3616|consen 962 KHGLLEAAIDFAADNCAFDFAFDLARIAAKDKMGEVHLKLAMFLEDE--GKFEDASKHYVEAIKLN 1025 (1636)
T ss_pred hhhhHHHHhhhhhcccchhhHHHHHHHhhhccCccchhHHhhhhhhc--cchhhhhHhhHHHhhcc
Confidence 455555555431 112211 233456788888888887 99999999999999886
No 272
>KOG1914 consensus mRNA cleavage and polyadenylation factor I complex, subunit RNA14 [RNA processing and modification]
Probab=96.85 E-value=0.39 Score=51.31 Aligned_cols=181 Identities=13% Similarity=0.052 Sum_probs=131.0
Q ss_pred HHHHHHHHHhCCCCHHHHHHHHHHHHHcCC--------------HHHHHHHHHHHHHHhccCCCchhchHHHHHHHHHHH
Q 006120 145 LVSFKRACELQPTDVRPHFRAGNCLYVLGR--------------YREAKEEYLLALEAAETGGNQWAYLLPQIYVNLGIA 210 (660)
Q Consensus 145 ~~~~~~al~~~p~~~~~~~~la~~~~~~g~--------------~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~la~~ 210 (660)
.-.|++++..-+..+++|+..+..+...++ -+++...|++++...-.. ....++.++..
T Consensus 265 ~yayeQ~ll~l~~~peiWy~~s~yl~~~s~l~~~~~d~~~a~~~t~e~~~~yEr~I~~l~~~-------~~~Ly~~~a~~ 337 (656)
T KOG1914|consen 265 MYAYEQCLLYLGYHPEIWYDYSMYLIEISDLLTEKGDVPDAKSLTDEAASIYERAIEGLLKE-------NKLLYFALADY 337 (656)
T ss_pred HHHHHHHHHHHhcCHHHHHHHHHHHHHhhHHHHHhcccccchhhHHHHHHHHHHHHHHHHHH-------HHHHHHHHHhh
Confidence 345778888778888888877776666666 678888888887654331 44455555554
Q ss_pred HHHCC---CHHHHHHHHHHHHHhCCCc-HHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHH-HHHhCCCh
Q 006120 211 LEGEG---MVLSACEYYRESAILCPTH-FRALKLLGSALFGVGEYRAAVKALEEAIFIKPDYADAHCDLAS-ALHAMGED 285 (660)
Q Consensus 211 ~~~~g---~~~~A~~~~~~al~~~p~~-~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~-~~~~~g~~ 285 (660)
-...- .++....++++++.+...+ .-+|..+-+.-.+..-...|...|.+|-+..-....++..-|. =|...++.
T Consensus 338 eE~~~~~n~~~~~~~~~~~ll~~~~~~~tLv~~~~mn~irR~eGlkaaR~iF~kaR~~~r~~hhVfVa~A~mEy~cskD~ 417 (656)
T KOG1914|consen 338 EESRYDDNKEKKVHEIYNKLLKIEDIDLTLVYCQYMNFIRRAEGLKAARKIFKKAREDKRTRHHVFVAAALMEYYCSKDK 417 (656)
T ss_pred HHHhcccchhhhhHHHHHHHHhhhccCCceehhHHHHHHHHhhhHHHHHHHHHHHhhccCCcchhhHHHHHHHHHhcCCh
Confidence 43333 3777888888888775444 3356666666677777788999999987765443334433332 24468999
Q ss_pred HHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHcc
Q 006120 286 ERAIEVFQKAIDLKPGHVDALYNLGGLYMDLGAGETEEAKKALKEALKM 334 (660)
Q Consensus 286 ~~A~~~~~~al~~~p~~~~a~~~La~~~~~~~~g~~~eA~~~~~~al~l 334 (660)
.-|...|+-.+...++.+..-......+..+ ++-..|...|++++.-
T Consensus 418 ~~AfrIFeLGLkkf~d~p~yv~~YldfL~~l--Ndd~N~R~LFEr~l~s 464 (656)
T KOG1914|consen 418 ETAFRIFELGLKKFGDSPEYVLKYLDFLSHL--NDDNNARALFERVLTS 464 (656)
T ss_pred hHHHHHHHHHHHhcCCChHHHHHHHHHHHHh--CcchhHHHHHHHHHhc
Confidence 9999999999999999998888888888888 8999999999999876
No 273
>COG2909 MalT ATP-dependent transcriptional regulator [Transcription]
Probab=96.82 E-value=0.61 Score=52.94 Aligned_cols=203 Identities=18% Similarity=0.059 Sum_probs=138.3
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHhCCC---------CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhccCCCchhc
Q 006120 128 HMAIGRVLYEHQLFKEALVSFKRACELQPT---------DVRPHFRAGNCLYVLGRYREAKEEYLLALEAAETGGNQWAY 198 (660)
Q Consensus 128 ~~~lg~~~~~~g~~~~A~~~~~~al~~~p~---------~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~ 198 (660)
-...+.......++.+|..+..++...-+. .+......|.+....|++++|++..+.++..-|......
T Consensus 418 vll~aW~~~s~~r~~ea~~li~~l~~~l~~~~~~~~~~l~ae~~aL~a~val~~~~~e~a~~lar~al~~L~~~~~~~-- 495 (894)
T COG2909 418 VLLQAWLLASQHRLAEAETLIARLEHFLKAPMHSRQGDLLAEFQALRAQVALNRGDPEEAEDLARLALVQLPEAAYRS-- 495 (894)
T ss_pred HHHHHHHHHHccChHHHHHHHHHHHHHhCcCcccchhhHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhcccccchh--
Confidence 455677788889999999998888765433 134555668888999999999999999999888755443
Q ss_pred hHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCC----cHH--HHHHHHHHHHHCCC--HHHHHHHHHHHHHh----CC
Q 006120 199 LLPQIYVNLGIALEGEGMVLSACEYYRESAILCPT----HFR--ALKLLGSALFGVGE--YRAAVKALEEAIFI----KP 266 (660)
Q Consensus 199 ~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~----~~~--~~~~lg~~~~~~g~--~~~A~~~~~~al~~----~p 266 (660)
...++..+|.+..-.|++++|..+.+.+.+.... ... +....+.++..+|+ +.+.+..+...-.. .|
T Consensus 496 -r~~~~sv~~~a~~~~G~~~~Al~~~~~a~~~a~~~~~~~l~~~~~~~~s~il~~qGq~~~a~~~~~~~~~~~q~l~q~~ 574 (894)
T COG2909 496 -RIVALSVLGEAAHIRGELTQALALMQQAEQMARQHDVYHLALWSLLQQSEILEAQGQVARAEQEKAFNLIREQHLEQKP 574 (894)
T ss_pred -hhhhhhhhhHHHHHhchHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHhhhcc
Confidence 5677888999999999999999999998877322 223 34455788888883 33333333332222 23
Q ss_pred CCHHHHHHHHHHHHhCCChHHHHHHHHHHHHhC----CCC--HH-HHHHHHHHHHHhcCCCHHHHHHHHHHHHccc
Q 006120 267 DYADAHCDLASALHAMGEDERAIEVFQKAIDLK----PGH--VD-ALYNLGGLYMDLGAGETEEAKKALKEALKMT 335 (660)
Q Consensus 267 ~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~----p~~--~~-a~~~La~~~~~~~~g~~~eA~~~~~~al~l~ 335 (660)
-..-.....+.++...-+++.+..-..+.++.. |.. .. +++.|+.++... |++++|...+.+...+-
T Consensus 575 ~~~f~~~~r~~ll~~~~r~~~~~~ear~~~~~~~~~~~~~~~~~~~~~~LA~l~~~~--Gdl~~A~~~l~~~~~l~ 648 (894)
T COG2909 575 RHEFLVRIRAQLLRAWLRLDLAEAEARLGIEVGSVYTPQPLLSRLALSMLAELEFLR--GDLDKALAQLDELERLL 648 (894)
T ss_pred cchhHHHHHHHHHHHHHHHhhhhHHhhhcchhhhhcccchhHHHHHHHHHHHHHHhc--CCHHHHHHHHHHHHHHh
Confidence 332333333344433334677766666666552 322 22 335788999988 99999999999887765
No 274
>KOG0985 consensus Vesicle coat protein clathrin, heavy chain [Intracellular trafficking, secretion, and vesicular transport]
Probab=96.76 E-value=0.28 Score=55.95 Aligned_cols=192 Identities=21% Similarity=0.212 Sum_probs=132.2
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhccCCCchhchH-----
Q 006120 126 DGHMAIGRVLYEHQLFKEALVSFKRACELQPTDVRPHFRAGNCLYVLGRYREAKEEYLLALEAAETGGNQWAYLL----- 200 (660)
Q Consensus 126 ~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~----- 200 (660)
..|..+|.+....|...+|++.|-++ +++..+...-.+..+.|+|++-+.++.-+-+.............
T Consensus 1105 ~vWsqlakAQL~~~~v~dAieSyika-----dDps~y~eVi~~a~~~~~~edLv~yL~MaRkk~~E~~id~eLi~AyAkt 1179 (1666)
T KOG0985|consen 1105 AVWSQLAKAQLQGGLVKDAIESYIKA-----DDPSNYLEVIDVASRTGKYEDLVKYLLMARKKVREPYIDSELIFAYAKT 1179 (1666)
T ss_pred HHHHHHHHHHHhcCchHHHHHHHHhc-----CCcHHHHHHHHHHHhcCcHHHHHHHHHHHHHhhcCccchHHHHHHHHHh
Confidence 78999999999999999999998775 67788888889999999999999998887766544321111000
Q ss_pred --------------HHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCC
Q 006120 201 --------------PQIYVNLGIALEGEGMVLSACEYYRESAILCPTHFRALKLLGSALFGVGEYRAAVKALEEAIFIKP 266 (660)
Q Consensus 201 --------------~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p 266 (660)
..-....|.-+...|.|+.|.-+|. +...|..|+..+...|+|+.|+...++|-....
T Consensus 1180 ~rl~elE~fi~gpN~A~i~~vGdrcf~~~~y~aAkl~y~--------~vSN~a~La~TLV~LgeyQ~AVD~aRKAns~kt 1251 (1666)
T KOG0985|consen 1180 NRLTELEEFIAGPNVANIQQVGDRCFEEKMYEAAKLLYS--------NVSNFAKLASTLVYLGEYQGAVDAARKANSTKT 1251 (1666)
T ss_pred chHHHHHHHhcCCCchhHHHHhHHHhhhhhhHHHHHHHH--------HhhhHHHHHHHHHHHHHHHHHHHHhhhccchhH
Confidence 0001122333333344444433332 345577788888899999999888887644310
Q ss_pred -----------C--------------CHHHHHHHHHHHHhCCChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCCCH
Q 006120 267 -----------D--------------YADAHCDLASALHAMGEDERAIEVFQKAIDLKPGHVDALYNLGGLYMDLGAGET 321 (660)
Q Consensus 267 -----------~--------------~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~La~~~~~~~~g~~ 321 (660)
. +++-+-.+...|...|-+++-+..++.++-+...+...+..||.+|.+- ++
T Consensus 1252 WK~VcfaCvd~~EFrlAQiCGL~iivhadeLeeli~~Yq~rGyFeElIsl~Ea~LGLERAHMgmfTELaiLYsky---kp 1328 (1666)
T KOG0985|consen 1252 WKEVCFACVDKEEFRLAQICGLNIIVHADELEELIEYYQDRGYFEELISLLEAGLGLERAHMGMFTELAILYSKY---KP 1328 (1666)
T ss_pred HHHHHHHHhchhhhhHHHhcCceEEEehHhHHHHHHHHHhcCcHHHHHHHHHhhhchhHHHHHHHHHHHHHHHhc---CH
Confidence 0 1233456777788888999999999998888887788888888888765 67
Q ss_pred HHHHHHHHHHHc
Q 006120 322 EEAKKALKEALK 333 (660)
Q Consensus 322 ~eA~~~~~~al~ 333 (660)
++-.++++--..
T Consensus 1329 ~km~EHl~LFws 1340 (1666)
T KOG0985|consen 1329 EKMMEHLKLFWS 1340 (1666)
T ss_pred HHHHHHHHHHHH
Confidence 776666665443
No 275
>cd02249 ZZ Zinc finger, ZZ type. Zinc finger present in dystrophin, CBP/p300 and many other proteins. The ZZ motif coordinates one or two zinc ions and most likely participates in ligand binding or molecular scaffolding. Many proteins containing ZZ motifs have other zinc-binding motifs as well, and the majority serve as scaffolds in pathways involving acetyltransferase, protein kinase, or ubiqitin-related activity. ZZ proteins can be grouped into the following functional classes: chromatin modifying, cytoskeletal scaffolding, ubiquitin binding or conjugating, and membrane receptor or ion-channel modifying proteins.
Probab=96.56 E-value=0.00089 Score=47.24 Aligned_cols=33 Identities=42% Similarity=0.997 Sum_probs=28.7
Q ss_pred cccccccccccccccccccc-ccccccccccCCC
Q 006120 591 HVCSVCRYPIIGSRFKEMKS-HFSLCSQCYSEGK 623 (660)
Q Consensus 591 ~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~ 623 (660)
.+|..|.-||.|.||+=..- +|+||..||++|.
T Consensus 1 ~~C~~C~~~i~g~r~~C~~C~d~dLC~~Cf~~~~ 34 (46)
T cd02249 1 YSCDGCLKPIVGVRYHCLVCEDFDLCSSCYAKGK 34 (46)
T ss_pred CCCcCCCCCCcCCEEECCCCCCCcCHHHHHCcCc
Confidence 36999999999999986554 5999999999996
No 276
>PF08631 SPO22: Meiosis protein SPO22/ZIP4 like; InterPro: IPR013940 SPO22 is a meiosis-specific protein with similarity to phospholipase A2, involved in completion of nuclear divisions during meiosis; induced early in meiosis []. It is also involved in sporulation [].
Probab=96.55 E-value=0.27 Score=49.91 Aligned_cols=166 Identities=16% Similarity=0.087 Sum_probs=111.7
Q ss_pred HHHcCCHHHHHHHHHHHHHHhccCCCchhchHHHHHHHHHHHHHHCC-CHHHHHHHHHHHHHhC----CC---c------
Q 006120 169 LYVLGRYREAKEEYLLALEAAETGGNQWAYLLPQIYVNLGIALEGEG-MVLSACEYYRESAILC----PT---H------ 234 (660)
Q Consensus 169 ~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~la~~~~~~g-~~~~A~~~~~~al~~~----p~---~------ 234 (660)
....|+.+.|..++.++-...+..........+..+++.|......+ ++++|...++++.++- +. .
T Consensus 3 A~~~~~~~~A~~~~~K~~~~~~~~~~~~~~~La~~~yn~G~~l~~~~~~~~~a~~wL~~a~~~l~~~~~~~~~~~~~~el 82 (278)
T PF08631_consen 3 AWKQGDLDLAEHMYSKAKDLLNSLDPDMAEELARVCYNIGKSLLSKKDKYEEAVKWLQRAYDILEKPGKMDKLSPDGSEL 82 (278)
T ss_pred chhhCCHHHHHHHHHHhhhHHhcCCcHHHHHHHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHhhhhccccCCcHHHH
Confidence 35678889999999888776632222222337889999999999999 9999999999998872 11 1
Q ss_pred -HHHHHHHHHHHHHCCCHH---HHHHHHHHHHHhCCCCHHHHHHHHHHHHhCCChHHHHHHHHHHHHhCCCCHHHHHHHH
Q 006120 235 -FRALKLLGSALFGVGEYR---AAVKALEEAIFIKPDYADAHCDLASALHAMGEDERAIEVFQKAIDLKPGHVDALYNLG 310 (660)
Q Consensus 235 -~~~~~~lg~~~~~~g~~~---~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~La 310 (660)
..++..++.++...+.++ +|..+++.+-.-.|+.+..+...-.++.+.++.+++.+.+.+++..-+-....+....
T Consensus 83 r~~iL~~La~~~l~~~~~~~~~ka~~~l~~l~~e~~~~~~~~~L~l~il~~~~~~~~~~~~L~~mi~~~~~~e~~~~~~l 162 (278)
T PF08631_consen 83 RLSILRLLANAYLEWDTYESVEKALNALRLLESEYGNKPEVFLLKLEILLKSFDEEEYEEILMRMIRSVDHSESNFDSIL 162 (278)
T ss_pred HHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHhCCCCcHHHHHHHHHHhccCChhHHHHHHHHHHHhcccccchHHHHH
Confidence 346778899999887765 4555666666667887877766666666689999999999999876542111122111
Q ss_pred HHHHHhcCCCHHHHHHHHHHHHcc
Q 006120 311 GLYMDLGAGETEEAKKALKEALKM 334 (660)
Q Consensus 311 ~~~~~~~~g~~~eA~~~~~~al~l 334 (660)
..+..........|...+.+.+..
T Consensus 163 ~~i~~l~~~~~~~a~~~ld~~l~~ 186 (278)
T PF08631_consen 163 HHIKQLAEKSPELAAFCLDYLLLN 186 (278)
T ss_pred HHHHHHHhhCcHHHHHHHHHHHHH
Confidence 222111113456677777666643
No 277
>PF04910 Tcf25: Transcriptional repressor TCF25; InterPro: IPR006994 This entry appears to represent a novel family of basic helix-loop-helix (bHLH) proteins that control differentiation and development of a variety of organs [, ]. Human Nulp1 (Q2MK75 from SWISSPROT) is a basic helix-loop-helix protein expressed broadly during early embryonic organogenesis. Over expression of human Nulp1 in COS-7 cells inhibits the transcriptional activity of serum response factor (SRF), suggesting that Nulp1 may act as a novel bHLH transcriptional repressor in the SRF signalling pathway to mediate cellular functions [].
Probab=96.55 E-value=0.14 Score=53.87 Aligned_cols=39 Identities=15% Similarity=0.082 Sum_probs=33.6
Q ss_pred HHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHh
Q 006120 151 ACELQPTDVRPHFRAGNCLYVLGRYREAKEEYLLALEAA 189 (660)
Q Consensus 151 al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~ 189 (660)
.++.+|.+.+++..++.++..+|+...|.+.+++|+-..
T Consensus 32 ll~~~PyHidtLlqls~v~~~~gd~~~A~~lleRALf~~ 70 (360)
T PF04910_consen 32 LLQKNPYHIDTLLQLSEVYRQQGDHAQANDLLERALFAF 70 (360)
T ss_pred HHHHCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHH
Confidence 356789999999999999999999999999999987553
No 278
>PF13181 TPR_8: Tetratricopeptide repeat; PDB: 3GW4_B 3MA5_C 2KCV_A 2KCL_A 3FP3_A 3LCA_A 3FP4_A 3FP2_A 1W3B_B 1ELW_A ....
Probab=96.52 E-value=0.0045 Score=40.31 Aligned_cols=30 Identities=37% Similarity=0.657 Sum_probs=13.5
Q ss_pred HHHHHHHHHHhCCChHHHHHHHHHHHHhCC
Q 006120 271 AHCDLASALHAMGEDERAIEVFQKAIDLKP 300 (660)
Q Consensus 271 ~~~~la~~~~~~g~~~~A~~~~~~al~~~p 300 (660)
+|..+|.+|..+|++++|+.+|+++++++|
T Consensus 3 ~~~~lg~~y~~~~~~~~A~~~~~~a~~~~~ 32 (34)
T PF13181_consen 3 AYYNLGKIYEQLGDYEEALEYFEKALELNP 32 (34)
T ss_dssp HHHHHHHHHHHTTSHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHhhCC
Confidence 344444444444444444444444444444
No 279
>KOG0530 consensus Protein farnesyltransferase, alpha subunit/protein geranylgeranyltransferase type I, alpha subunit [Posttranslational modification, protein turnover, chaperones]
Probab=96.48 E-value=0.095 Score=50.82 Aligned_cols=169 Identities=17% Similarity=0.051 Sum_probs=136.8
Q ss_pred CCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHc-CCHHHHHHHHHHHHHHhccCCCchhchHHHHHHHHHHHHHHCCCH
Q 006120 139 QLFKEALVSFKRACELQPTDVRPHFRAGNCLYVL-GRYREAKEEYLLALEAAETGGNQWAYLLPQIYVNLGIALEGEGMV 217 (660)
Q Consensus 139 g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~-g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~la~~~~~~g~~ 217 (660)
..-..|+.+-..++.++|.+-.+|...-.++..+ .+..+-++++...++-+|+ +-++|...-.+....|++
T Consensus 57 E~S~RAl~LT~d~i~lNpAnYTVW~yRr~iL~~l~~dL~~El~~l~eI~e~npK--------NYQvWHHRr~ive~l~d~ 128 (318)
T KOG0530|consen 57 EKSPRALQLTEDAIRLNPANYTVWQYRRVILRHLMSDLNKELEYLDEIIEDNPK--------NYQVWHHRRVIVELLGDP 128 (318)
T ss_pred ccCHHHHHHHHHHHHhCcccchHHHHHHHHHHHhHHHHHHHHHHHHHHHHhCcc--------chhHHHHHHHHHHHhcCc
Confidence 3446788888999999999999988887777665 4677889999999999998 667777777778888888
Q ss_pred H-HHHHHHHHHHHhCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHh-CC-----ChHHHHH
Q 006120 218 L-SACEYYRESAILCPTHFRALKLLGSALFGVGEYRAAVKALEEAIFIKPDYADAHCDLASALHA-MG-----EDERAIE 290 (660)
Q Consensus 218 ~-~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~-~g-----~~~~A~~ 290 (660)
. .-++..+.++..+.++..+|...-.+...-+.++.-+.+..+.++.+-.+-.+|+..--+... .| ..+.-+.
T Consensus 129 s~rELef~~~~l~~DaKNYHaWshRqW~~r~F~~~~~EL~y~~~Lle~Di~NNSAWN~Ryfvi~~~~~~~~~~~le~El~ 208 (318)
T KOG0530|consen 129 SFRELEFTKLMLDDDAKNYHAWSHRQWVLRFFKDYEDELAYADELLEEDIRNNSAWNQRYFVITNTKGVISKAELERELN 208 (318)
T ss_pred ccchHHHHHHHHhccccchhhhHHHHHHHHHHhhHHHHHHHHHHHHHHhhhccchhheeeEEEEeccCCccHHHHHHHHH
Confidence 8 888999999999999999999999999999999999999999999987777777643222221 11 2344567
Q ss_pred HHHHHHHhCCCCHHHHHHHHHHHHH
Q 006120 291 VFQKAIDLKPGHVDALYNLGGLYMD 315 (660)
Q Consensus 291 ~~~~al~~~p~~~~a~~~La~~~~~ 315 (660)
+..+.|.+.|++..+|..|..++..
T Consensus 209 yt~~~I~~vP~NeSaWnYL~G~l~~ 233 (318)
T KOG0530|consen 209 YTKDKILLVPNNESAWNYLKGLLEL 233 (318)
T ss_pred HHHHHHHhCCCCccHHHHHHHHHHh
Confidence 7888899999999999999998885
No 280
>PF13181 TPR_8: Tetratricopeptide repeat; PDB: 3GW4_B 3MA5_C 2KCV_A 2KCL_A 3FP3_A 3LCA_A 3FP4_A 3FP2_A 1W3B_B 1ELW_A ....
Probab=96.41 E-value=0.0064 Score=39.58 Aligned_cols=30 Identities=37% Similarity=0.480 Sum_probs=16.3
Q ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHhCC
Q 006120 203 IYVNLGIALEGEGMVLSACEYYRESAILCP 232 (660)
Q Consensus 203 ~~~~la~~~~~~g~~~~A~~~~~~al~~~p 232 (660)
+++.+|.++..+|++++|+.+|+++++++|
T Consensus 3 ~~~~lg~~y~~~~~~~~A~~~~~~a~~~~~ 32 (34)
T PF13181_consen 3 AYYNLGKIYEQLGDYEEALEYFEKALELNP 32 (34)
T ss_dssp HHHHHHHHHHHTTSHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHhhCC
Confidence 445555555555555555555555555544
No 281
>PF08424 NRDE-2: NRDE-2, necessary for RNA interference; InterPro: IPR013633 This is domain is found in eukaryotic proteins of unknown function.
Probab=96.38 E-value=0.27 Score=51.03 Aligned_cols=158 Identities=15% Similarity=0.086 Sum_probs=85.2
Q ss_pred HHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhccCCCchhchHHHHHHHHHHHHHHCCCHHHHHHHHH
Q 006120 146 VSFKRACELQPTDVRPHFRAGNCLYVLGRYREAKEEYLLALEAAETGGNQWAYLLPQIYVNLGIALEGEGMVLSACEYYR 225 (660)
Q Consensus 146 ~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~ 225 (660)
.-|++.+..+|.+..+|..+....-..-...... . -....-.+.-+.+|+
T Consensus 6 ~el~~~v~~~P~di~~Wl~li~~Qd~~~~~~~~~-----------~-------------------~~~~a~~E~klsile 55 (321)
T PF08424_consen 6 AELNRRVRENPHDIEAWLELIEFQDELFRLQSSS-----------K-------------------AERRALAERKLSILE 55 (321)
T ss_pred HHHHHHHHhCcccHHHHHHHHHHHHHhccccccc-----------h-------------------hhHHHHHHHHHHHHH
Confidence 4577888889999999988876654433211100 0 000001233344555
Q ss_pred HHHHhCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHh---CCChHHHHHHHHHHHHhC---
Q 006120 226 ESAILCPTHFRALKLLGSALFGVGEYRAAVKALEEAIFIKPDYADAHCDLASALHA---MGEDERAIEVFQKAIDLK--- 299 (660)
Q Consensus 226 ~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~---~g~~~~A~~~~~~al~~~--- 299 (660)
+|++.+|++...+..+-.+..+..+.++...-+++++..+|++...|..+-..... .-.++.....|.+++..-
T Consensus 56 rAL~~np~~~~L~l~~l~~~~~~~~~~~l~~~we~~l~~~~~~~~LW~~yL~~~q~~~~~f~v~~~~~~y~~~l~~L~~~ 135 (321)
T PF08424_consen 56 RALKHNPDSERLLLGYLEEGEKVWDSEKLAKKWEELLFKNPGSPELWREYLDFRQSNFASFTVSDVRDVYEKCLRALSRR 135 (321)
T ss_pred HHHHhCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHCCCChHHHHHHHHHHHHHhccCcHHHHHHHHHHHHHHHHHh
Confidence 55555555555555555555555555555555566666555555555443332222 223444555555444431
Q ss_pred -C--------------CCHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHccc
Q 006120 300 -P--------------GHVDALYNLGGLYMDLGAGETEEAKKALKEALKMT 335 (660)
Q Consensus 300 -p--------------~~~~a~~~La~~~~~~~~g~~~eA~~~~~~al~l~ 335 (660)
. ........+.....+. |..+.|+..++-.++++
T Consensus 136 ~~~~~~~~~~~~~~e~~~l~v~~r~~~fl~~a--G~~E~Ava~~Qa~lE~n 184 (321)
T PF08424_consen 136 RSGRMTSHPDLPELEEFMLYVFLRLCRFLRQA--GYTERAVALWQALLEFN 184 (321)
T ss_pred hccccccccchhhHHHHHHHHHHHHHHHHHHC--CchHHHHHHHHHHHHHH
Confidence 0 0123455566666666 78888888888887776
No 282
>PF10602 RPN7: 26S proteasome subunit RPN7; InterPro: IPR019585 This entry represents the regulatory subunit RPN7 (known as the non-ATPase regulatory subunit 6 in higher eukaryotes) of the 26S proteasome. This entry also matches the evolutionarily related subunit 1 of the COP9 signalosome complex (CSN) from Arabidopsis []. The 26S proteasome plays a major role in ATP-dependent degradation of ubiquitinated proteins. Substrate specificity is conferred by the regulatory particle (RP), which can dissociate into stable lid and base subcomplexes. The regulatory subunit RPN7 is one of the lid subunits of the 26S proteasome and has been shown in Saccharomyces cerevisiae (Baker's yeast) to be required for structural integrity []. The COP9 signalosome is a conserved protein complex composed of eight subunits, where Individual subunits of the complex have been linked to various signal transduction pathways leading to gene expression and cell cycle control []. The overall organisation and the amino acid sequences of the COP9 signalosome subunits resemble the lid subcomplex of the 19 S regulatory particle for the 26 S proteasome []. COP9 subunit 1 (CSN1 or GPS1) of the COP9 complex is an essential subunit of the complex with regard to both structural integrity and functionality. The N-terminal region of subunit 1 (CSN1-N) can inhibit c-fos expression from either a transfected template or a chromosomal transgene (fos-lacZ), and may contain the activity domain that confers most of the repression functions of CSN1. The C-terminal region of subunit 1 (CSN1-C) allows integration of the protein into the COP9 signalosome.
Probab=96.37 E-value=0.17 Score=47.36 Aligned_cols=107 Identities=16% Similarity=0.111 Sum_probs=84.4
Q ss_pred HHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC---CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhccCCCchhc
Q 006120 122 EEAFDGHMAIGRVLYEHQLFKEALVSFKRACELQPT---DVRPHFRAGNCLYVLGRYREAKEEYLLALEAAETGGNQWAY 198 (660)
Q Consensus 122 ~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~---~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~ 198 (660)
...-.++..+|..|.+.|++++|++.|.++.+.... ..+.+..+..+....+++.....+..++-......++...
T Consensus 33 esir~~~~~l~~~~~~~Gd~~~A~k~y~~~~~~~~~~~~~id~~l~~irv~i~~~d~~~v~~~i~ka~~~~~~~~d~~~- 111 (177)
T PF10602_consen 33 ESIRMALEDLADHYCKIGDLEEALKAYSRARDYCTSPGHKIDMCLNVIRVAIFFGDWSHVEKYIEKAESLIEKGGDWER- 111 (177)
T ss_pred HHHHHHHHHHHHHHHHhhhHHHHHHHHHHHhhhcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHhccchHHH-
Confidence 344478899999999999999999999998886533 3467888889999999999999999999887666443222
Q ss_pred hHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh
Q 006120 199 LLPQIYVNLGIALEGEGMVLSACEYYRESAIL 230 (660)
Q Consensus 199 ~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~ 230 (660)
........|..+...++|.+|...|-.+..-
T Consensus 112 -~nrlk~~~gL~~l~~r~f~~AA~~fl~~~~t 142 (177)
T PF10602_consen 112 -RNRLKVYEGLANLAQRDFKEAAELFLDSLST 142 (177)
T ss_pred -HHHHHHHHHHHHHHhchHHHHHHHHHccCcC
Confidence 4455666677778888999998888776543
No 283
>PF08631 SPO22: Meiosis protein SPO22/ZIP4 like; InterPro: IPR013940 SPO22 is a meiosis-specific protein with similarity to phospholipase A2, involved in completion of nuclear divisions during meiosis; induced early in meiosis []. It is also involved in sporulation [].
Probab=96.35 E-value=1.4 Score=44.68 Aligned_cols=222 Identities=14% Similarity=0.050 Sum_probs=130.6
Q ss_pred HHHHHHHHHHHHHHHHHhhc-c----CcHHHHHHHHHHHHHHHHcC-CHHHHHHHHHHHHHh----CCC----------C
Q 006120 99 HDYAVFVKELGVLRNRADGA-R----SREEAFDGHMAIGRVLYEHQ-LFKEALVSFKRACEL----QPT----------D 158 (660)
Q Consensus 99 ~~~g~~~~Al~~l~~a~~~~-~----~~~~~~~~~~~lg~~~~~~g-~~~~A~~~~~~al~~----~p~----------~ 158 (660)
...|+++.|...+.++-... . ......+.+++.|......+ +++.|..+++++.++ .+. .
T Consensus 4 ~~~~~~~~A~~~~~K~~~~~~~~~~~~~~~La~~~yn~G~~l~~~~~~~~~a~~wL~~a~~~l~~~~~~~~~~~~~~elr 83 (278)
T PF08631_consen 4 WKQGDLDLAEHMYSKAKDLLNSLDPDMAEELARVCYNIGKSLLSKKDKYEEAVKWLQRAYDILEKPGKMDKLSPDGSELR 83 (278)
T ss_pred hhhCCHHHHHHHHHHhhhHHhcCCcHHHHHHHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHhhhhccccCCcHHHHH
Confidence 34566777777777666544 2 22344577899999999999 999999999999987 211 1
Q ss_pred HHHHHHHHHHHHHcCCHHHHH---HHHHHHHHHhccCCCchhchHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCC--
Q 006120 159 VRPHFRAGNCLYVLGRYREAK---EEYLLALEAAETGGNQWAYLLPQIYVNLGIALEGEGMVLSACEYYRESAILCPT-- 233 (660)
Q Consensus 159 ~~~~~~la~~~~~~g~~~~A~---~~~~~al~~~p~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~-- 233 (660)
..++..++.+|...+.++... .+.+.+-...|+ .+.++..--.++...++.+++.+.+.+++..-+-
T Consensus 84 ~~iL~~La~~~l~~~~~~~~~ka~~~l~~l~~e~~~--------~~~~~~L~l~il~~~~~~~~~~~~L~~mi~~~~~~e 155 (278)
T PF08631_consen 84 LSILRLLANAYLEWDTYESVEKALNALRLLESEYGN--------KPEVFLLKLEILLKSFDEEEYEEILMRMIRSVDHSE 155 (278)
T ss_pred HHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHhCCC--------CcHHHHHHHHHHhccCChhHHHHHHHHHHHhccccc
Confidence 356788899999888765443 333344333444 3444433334444489999999999999886441
Q ss_pred -cHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC--CCCHHHHHHH---HHHHHhCC--ChHHH--HHHHHHHHH----h-
Q 006120 234 -HFRALKLLGSALFGVGEYRAAVKALEEAIFIK--PDYADAHCDL---ASALHAMG--EDERA--IEVFQKAID----L- 298 (660)
Q Consensus 234 -~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~--p~~~~~~~~l---a~~~~~~g--~~~~A--~~~~~~al~----~- 298 (660)
+..........+.. .....|...+...+... |.... |... -.++...+ +.... ++..+..+. .
T Consensus 156 ~~~~~~l~~i~~l~~-~~~~~a~~~ld~~l~~r~~~~~~~-~~e~~vl~~~~~~~~~~~~~~~~~i~~l~~~~~~v~~~~ 233 (278)
T PF08631_consen 156 SNFDSILHHIKQLAE-KSPELAAFCLDYLLLNRFKSSEDQ-WLEKLVLTRVLLTTQSKDLSSSEKIESLEELLSIVEHSL 233 (278)
T ss_pred chHHHHHHHHHHHHh-hCcHHHHHHHHHHHHHHhCCChhH-HHHHHHHHHHHHHcCCccccchhHHHHHHHHHHHHHHHh
Confidence 22222222222222 34456777776666543 22211 3322 22232222 22222 333333322 1
Q ss_pred -CCCCH-------HHHHHHHHHHHHhcCCCHHHHHHHHHHHH
Q 006120 299 -KPGHV-------DALYNLGGLYMDLGAGETEEAKKALKEAL 332 (660)
Q Consensus 299 -~p~~~-------~a~~~La~~~~~~~~g~~~eA~~~~~~al 332 (660)
.|-.. ..+.+.|...++. ++|++|..+|+-++
T Consensus 234 ~~~ls~~~~~a~~~LLW~~~~~~~~~--k~y~~A~~w~~~al 273 (278)
T PF08631_consen 234 GKQLSAEAASAIHTLLWNKGKKHYKA--KNYDEAIEWYELAL 273 (278)
T ss_pred cCCCCHHHHHHHHHHHHHHHHHHHhh--cCHHHHHHHHHHHH
Confidence 22222 2455667777777 99999999999776
No 284
>KOG4507 consensus Uncharacterized conserved protein, contains TPR repeats [Function unknown]
Probab=96.29 E-value=0.012 Score=62.55 Aligned_cols=106 Identities=22% Similarity=0.322 Sum_probs=86.5
Q ss_pred HHHHHHH-HCCCHHHHHHHHHHHHHhCCCC-HHHHHHHHHHHHhCCChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhc
Q 006120 240 LLGSALF-GVGEYRAAVKALEEAIFIKPDY-ADAHCDLASALHAMGEDERAIEVFQKAIDLKPGHVDALYNLGGLYMDLG 317 (660)
Q Consensus 240 ~lg~~~~-~~g~~~~A~~~~~~al~~~p~~-~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~La~~~~~~~ 317 (660)
+++-+|. ..|+...|+.++..|+...|.. .....+||.++...|-.-.|-..+.+++.+....+-.++.+|..+..+
T Consensus 611 n~aglywr~~gn~~~a~~cl~~a~~~~p~~~~v~~v~la~~~~~~~~~~da~~~l~q~l~~~~sepl~~~~~g~~~l~l- 689 (886)
T KOG4507|consen 611 NEAGLYWRAVGNSTFAIACLQRALNLAPLQQDVPLVNLANLLIHYGLHLDATKLLLQALAINSSEPLTFLSLGNAYLAL- 689 (886)
T ss_pred ecccceeeecCCcHHHHHHHHHHhccChhhhcccHHHHHHHHHHhhhhccHHHHHHHHHhhcccCchHHHhcchhHHHH-
Confidence 4444444 5799999999999999998865 345778999999999999999999999999888888999999999998
Q ss_pred CCCHHHHHHHHHHHHcccCCh-hHHHHHHHH
Q 006120 318 AGETEEAKKALKEALKMTNRV-ELHDAVSHL 347 (660)
Q Consensus 318 ~g~~~eA~~~~~~al~l~p~~-~~~~~~~~l 347 (660)
.+.+.|++.+++|++++|+. +....+..+
T Consensus 690 -~~i~~a~~~~~~a~~~~~~~~~~~~~l~~i 719 (886)
T KOG4507|consen 690 -KNISGALEAFRQALKLTTKCPECENSLKLI 719 (886)
T ss_pred -hhhHHHHHHHHHHHhcCCCChhhHHHHHHH
Confidence 99999999999999999873 333334333
No 285
>KOG1914 consensus mRNA cleavage and polyadenylation factor I complex, subunit RNA14 [RNA processing and modification]
Probab=96.16 E-value=1.7 Score=46.69 Aligned_cols=187 Identities=12% Similarity=0.082 Sum_probs=130.5
Q ss_pred HHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHHcC---CHHHHHHHHHHHHHHhccCCCchhchHHHHHHHHHHHHHHCCC
Q 006120 141 FKEALVSFKRACELQP-TDVRPHFRAGNCLYVLG---RYREAKEEYLLALEAAETGGNQWAYLLPQIYVNLGIALEGEGM 216 (660)
Q Consensus 141 ~~~A~~~~~~al~~~p-~~~~~~~~la~~~~~~g---~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~la~~~~~~g~ 216 (660)
-+++..+|+++++.-- .+...++.++..-...- +++.-...+++++.+.... ...++..+-..-.+..-
T Consensus 309 t~e~~~~yEr~I~~l~~~~~~Ly~~~a~~eE~~~~~n~~~~~~~~~~~ll~~~~~~-------~tLv~~~~mn~irR~eG 381 (656)
T KOG1914|consen 309 TDEAASIYERAIEGLLKENKLLYFALADYEESRYDDNKEKKVHEIYNKLLKIEDID-------LTLVYCQYMNFIRRAEG 381 (656)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHhcccchhhhhHHHHHHHHhhhccC-------CceehhHHHHHHHHhhh
Confidence 6788888888887532 23344444444333222 3667777888888765432 23456666666667777
Q ss_pred HHHHHHHHHHHHHhCCCcHHHHHHHHHH-HHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhCCChHHHHHHHHHH
Q 006120 217 VLSACEYYRESAILCPTHFRALKLLGSA-LFGVGEYRAAVKALEEAIFIKPDYADAHCDLASALHAMGEDERAIEVFQKA 295 (660)
Q Consensus 217 ~~~A~~~~~~al~~~p~~~~~~~~lg~~-~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~a 295 (660)
...|...|.++-+.......++..-|.+ |...++.+-|...|+-.+...++.+..-......+...|+-..|...|+++
T Consensus 382 lkaaR~iF~kaR~~~r~~hhVfVa~A~mEy~cskD~~~AfrIFeLGLkkf~d~p~yv~~YldfL~~lNdd~N~R~LFEr~ 461 (656)
T KOG1914|consen 382 LKAARKIFKKAREDKRTRHHVFVAAALMEYYCSKDKETAFRIFELGLKKFGDSPEYVLKYLDFLSHLNDDNNARALFERV 461 (656)
T ss_pred HHHHHHHHHHHhhccCCcchhhHHHHHHHHHhcCChhHHHHHHHHHHHhcCCChHHHHHHHHHHHHhCcchhHHHHHHHH
Confidence 8889999999877644443444443433 455799999999999999999999999888999999999999999999999
Q ss_pred HHh--CCCC-HHHHHHHHHHHHHhcCCCHHHHHHHHHHHHcccC
Q 006120 296 IDL--KPGH-VDALYNLGGLYMDLGAGETEEAKKALKEALKMTN 336 (660)
Q Consensus 296 l~~--~p~~-~~a~~~La~~~~~~~~g~~~eA~~~~~~al~l~p 336 (660)
+.. .|+. ...|..+-..-... |+....++.-++-...-|
T Consensus 462 l~s~l~~~ks~~Iw~r~l~yES~v--GdL~si~~lekR~~~af~ 503 (656)
T KOG1914|consen 462 LTSVLSADKSKEIWDRMLEYESNV--GDLNSILKLEKRRFTAFP 503 (656)
T ss_pred HhccCChhhhHHHHHHHHHHHHhc--ccHHHHHHHHHHHHHhcc
Confidence 987 4333 34566555555555 888877777666554444
No 286
>KOG0530 consensus Protein farnesyltransferase, alpha subunit/protein geranylgeranyltransferase type I, alpha subunit [Posttranslational modification, protein turnover, chaperones]
Probab=96.14 E-value=0.56 Score=45.67 Aligned_cols=208 Identities=13% Similarity=0.040 Sum_probs=148.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhccCcHHHHHHHHHHHHHHHH-cCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcC
Q 006120 95 EESTHDYAVFVKELGVLRNRADGARSREEAFDGHMAIGRVLYE-HQLFKEALVSFKRACELQPTDVRPHFRAGNCLYVLG 173 (660)
Q Consensus 95 ~~~~~~~g~~~~Al~~l~~a~~~~~~~~~~~~~~~~lg~~~~~-~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g 173 (660)
--+......-..|++....++...+.+ +.+|...-.++.. ..+..+-++++.++++.+|.+-.+|...-.+....|
T Consensus 50 RAI~~~~E~S~RAl~LT~d~i~lNpAn---YTVW~yRr~iL~~l~~dL~~El~~l~eI~e~npKNYQvWHHRr~ive~l~ 126 (318)
T KOG0530|consen 50 RAIIAKNEKSPRALQLTEDAIRLNPAN---YTVWQYRRVILRHLMSDLNKELEYLDEIIEDNPKNYQVWHHRRVIVELLG 126 (318)
T ss_pred HHHHhccccCHHHHHHHHHHHHhCccc---chHHHHHHHHHHHhHHHHHHHHHHHHHHHHhCccchhHHHHHHHHHHHhc
Confidence 334445555667777777777665544 3455444444443 346788899999999999999999999999999999
Q ss_pred CHH-HHHHHHHHHHHHhccCCCchhchHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHH-CC--
Q 006120 174 RYR-EAKEEYLLALEAAETGGNQWAYLLPQIYVNLGIALEGEGMVLSACEYYRESAILCPTHFRALKLLGSALFG-VG-- 249 (660)
Q Consensus 174 ~~~-~A~~~~~~al~~~p~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~-~g-- 249 (660)
++. .-++..+.++..+.+ +-.+|...-.+....+.++.-+.+..+.++.+-.+-.+|...--+... .|
T Consensus 127 d~s~rELef~~~~l~~DaK--------NYHaWshRqW~~r~F~~~~~EL~y~~~Lle~Di~NNSAWN~Ryfvi~~~~~~~ 198 (318)
T KOG0530|consen 127 DPSFRELEFTKLMLDDDAK--------NYHAWSHRQWVLRFFKDYEDELAYADELLEEDIRNNSAWNQRYFVITNTKGVI 198 (318)
T ss_pred CcccchHHHHHHHHhcccc--------chhhhHHHHHHHHHHhhHHHHHHHHHHHHHHhhhccchhheeeEEEEeccCCc
Confidence 988 889999999987776 556666677777888889999999999999887776676543222111 11
Q ss_pred ---CHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHh-CC--ChHHHHHHHHHHH-HhCCCCHHHHHHHHHHH
Q 006120 250 ---EYRAAVKALEEAIFIKPDYADAHCDLASALHA-MG--EDERAIEVFQKAI-DLKPGHVDALYNLGGLY 313 (660)
Q Consensus 250 ---~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~-~g--~~~~A~~~~~~al-~~~p~~~~a~~~La~~~ 313 (660)
..+.-+.+..+.|.+.|++..+|..|.-++.. .| .+.+-.......+ ......+..+..+..+|
T Consensus 199 ~~~~le~El~yt~~~I~~vP~NeSaWnYL~G~l~~d~gl~s~s~vv~f~~~l~~~~~~~sP~lla~l~d~~ 269 (318)
T KOG0530|consen 199 SKAELERELNYTKDKILLVPNNESAWNYLKGLLELDSGLSSDSKVVSFVENLYLQLPKRSPFLLAFLLDLY 269 (318)
T ss_pred cHHHHHHHHHHHHHHHHhCCCCccHHHHHHHHHHhccCCcCCchHHHHHHHHhhccCCCChhHHHHHHHHH
Confidence 23456778888999999999999999888876 44 2444444444444 33444566666677666
No 287
>KOG1258 consensus mRNA processing protein [RNA processing and modification]
Probab=96.07 E-value=2.9 Score=45.66 Aligned_cols=188 Identities=11% Similarity=-0.059 Sum_probs=129.8
Q ss_pred HHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhccCCCchhchHH
Q 006120 122 EEAFDGHMAIGRVLYEHQLFKEALVSFKRACELQPTDVRPHFRAGNCLYVLGRYREAKEEYLLALEAAETGGNQWAYLLP 201 (660)
Q Consensus 122 ~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~ 201 (660)
......|......-...|+++.....|++++--.......|...+......|+.+-|...+..+.++.-.. .+
T Consensus 294 ~aql~nw~~yLdf~i~~g~~~~~~~l~ercli~cA~Y~efWiky~~~m~~~~~~~~~~~~~~~~~~i~~k~-------~~ 366 (577)
T KOG1258|consen 294 QAQLKNWRYYLDFEITLGDFSRVFILFERCLIPCALYDEFWIKYARWMESSGDVSLANNVLARACKIHVKK-------TP 366 (577)
T ss_pred HHHHHHHHHHhhhhhhcccHHHHHHHHHHHHhHHhhhHHHHHHHHHHHHHcCchhHHHHHHHhhhhhcCCC-------Cc
Confidence 34445666666777778888888888888877766677788888888888888888887777777765443 45
Q ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHCCCHHHHHH---HHHHHHHhCCC---CHHHHHHH
Q 006120 202 QIYVNLGIALEGEGMVLSACEYYRESAILCPTHFRALKLLGSALFGVGEYRAAVK---ALEEAIFIKPD---YADAHCDL 275 (660)
Q Consensus 202 ~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~---~~~~al~~~p~---~~~~~~~l 275 (660)
.++..-+..-...|+++.|...+++...-.|+...+-........+.|+.+.+.. ++.....-..+ ....+...
T Consensus 367 ~i~L~~a~f~e~~~n~~~A~~~lq~i~~e~pg~v~~~l~~~~~e~r~~~~~~~~~~~~l~s~~~~~~~~~~i~~~l~~~~ 446 (577)
T KOG1258|consen 367 IIHLLEARFEESNGNFDDAKVILQRIESEYPGLVEVVLRKINWERRKGNLEDANYKNELYSSIYEGKENNGILEKLYVKF 446 (577)
T ss_pred HHHHHHHHHHHhhccHHHHHHHHHHHHhhCCchhhhHHHHHhHHHHhcchhhhhHHHHHHHHhcccccCcchhHHHHHHH
Confidence 6666677777778888888888888877778877777777777777788777774 22221111111 13344455
Q ss_pred HHHH-HhCCChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHh
Q 006120 276 ASAL-HAMGEDERAIEVFQKAIDLKPGHVDALYNLGGLYMDL 316 (660)
Q Consensus 276 a~~~-~~~g~~~~A~~~~~~al~~~p~~~~a~~~La~~~~~~ 316 (660)
+... .-.++.+.|...+.+++...|.+...+..+..+....
T Consensus 447 ~r~~~~i~~d~~~a~~~l~~~~~~~~~~k~~~~~~~~~~~~~ 488 (577)
T KOG1258|consen 447 ARLRYKIREDADLARIILLEANDILPDCKVLYLELIRFELIQ 488 (577)
T ss_pred HHHHHHHhcCHHHHHHHHHHhhhcCCccHHHHHHHHHHHHhC
Confidence 5433 3467778888888888888888877777666665544
No 288
>PF10345 Cohesin_load: Cohesin loading factor; InterPro: IPR019440 Cohesin loading factor is a conserved protein that has been characterised in fungi. It is associated with the cohesin complex and is required in G1 for cohesin binding to chromosomes, but is dispensable in G2 when cohesion has been established. It is often referred to as Ssl3 in Schizosaccharomyces pombe (Fission yeast), and Scc4 in Saccharomyces cerevisiae (Baker's yeast). It complexes with Mis4 [].
Probab=95.98 E-value=1.2 Score=50.62 Aligned_cols=188 Identities=16% Similarity=0.090 Sum_probs=125.7
Q ss_pred HHHHHHHHHHHHHhCCC----CHHHHHHHHHHHH-HcCCHHHHHHHHHHHHHHhccCCCchhchHHHHHHHHHHHHHHCC
Q 006120 141 FKEALVSFKRACELQPT----DVRPHFRAGNCLY-VLGRYREAKEEYLLALEAAETGGNQWAYLLPQIYVNLGIALEGEG 215 (660)
Q Consensus 141 ~~~A~~~~~~al~~~p~----~~~~~~~la~~~~-~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~la~~~~~~g 215 (660)
...|+.+++-+++..+- .+.+.+.+|.++. ...+++.|..++++++.+...+. .......+...++.++.+.+
T Consensus 37 I~~ai~CL~~~~~~~~l~p~~ea~~~l~la~iL~~eT~n~~~Ae~~L~k~~~l~~~~~--~~d~k~~~~~ll~~i~~~~~ 114 (608)
T PF10345_consen 37 IATAIKCLEAVLKQFKLSPRQEARVRLRLASILLEETENLDLAETYLEKAILLCERHR--LTDLKFRCQFLLARIYFKTN 114 (608)
T ss_pred HHHHHHHHHHHhccCCCCHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhccccc--hHHHHHHHHHHHHHHHHhcC
Confidence 45678888887753211 3567888898887 68999999999999998886622 22224556667789999888
Q ss_pred CHHHHHHHHHHHHHhCCCc----HHHHHHH--HHHHHHCCCHHHHHHHHHHHHHhC--CCCHHH----HHHHHHHHHhCC
Q 006120 216 MVLSACEYYRESAILCPTH----FRALKLL--GSALFGVGEYRAAVKALEEAIFIK--PDYADA----HCDLASALHAMG 283 (660)
Q Consensus 216 ~~~~A~~~~~~al~~~p~~----~~~~~~l--g~~~~~~g~~~~A~~~~~~al~~~--p~~~~~----~~~la~~~~~~g 283 (660)
... |...+++.++..... ....+.+ .......+++..|++.++...... ..++.+ ....+.+....+
T Consensus 115 ~~~-a~~~l~~~I~~~~~~~~~~w~~~frll~~~l~~~~~d~~~Al~~L~~~~~~a~~~~d~~~~v~~~l~~~~l~l~~~ 193 (608)
T PF10345_consen 115 PKA-ALKNLDKAIEDSETYGHSAWYYAFRLLKIQLALQHKDYNAALENLQSIAQLANQRGDPAVFVLASLSEALLHLRRG 193 (608)
T ss_pred HHH-HHHHHHHHHHHHhccCchhHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHhhhcCCHHHHHHHHHHHHHHHhcCC
Confidence 888 999999998875441 1122222 233333489999999999988876 344433 233456667788
Q ss_pred ChHHHHHHHHHHHHhCC----------CCHHHHHHHHHHHHHhcCCCHHHHHHHHHHH
Q 006120 284 EDERAIEVFQKAIDLKP----------GHVDALYNLGGLYMDLGAGETEEAKKALKEA 331 (660)
Q Consensus 284 ~~~~A~~~~~~al~~~p----------~~~~a~~~La~~~~~~~~g~~~eA~~~~~~a 331 (660)
..+++++..+++..... ....++..+-.+......|++..+...+++.
T Consensus 194 ~~~d~~~~l~~~~~~~~~~q~~~~~~~~qL~~~~lll~l~~~l~~~~~~~~~~~L~~l 251 (608)
T PF10345_consen 194 SPDDVLELLQRAIAQARSLQLDPSVHIPQLKALFLLLDLCCSLQQGDVKNSKQKLKQL 251 (608)
T ss_pred CchhHHHHHHHHHHHHhhcccCCCCCcHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 88889988888854321 1234566655555444347776766665544
No 289
>PF08424 NRDE-2: NRDE-2, necessary for RNA interference; InterPro: IPR013633 This is domain is found in eukaryotic proteins of unknown function.
Probab=95.86 E-value=0.52 Score=48.92 Aligned_cols=83 Identities=11% Similarity=0.151 Sum_probs=66.0
Q ss_pred HHHHHHHHHHHHhCCCCHHHHHHHHHHHHhCCChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH-hcCCCHHHHHHHHHH
Q 006120 252 RAAVKALEEAIFIKPDYADAHCDLASALHAMGEDERAIEVFQKAIDLKPGHVDALYNLGGLYMD-LGAGETEEAKKALKE 330 (660)
Q Consensus 252 ~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~La~~~~~-~~~g~~~eA~~~~~~ 330 (660)
+.-+.+|++|++.+|++...+..+-.+..+..+.++...-+++++..+|++...|...-..... ...-.+++....|.+
T Consensus 48 E~klsilerAL~~np~~~~L~l~~l~~~~~~~~~~~l~~~we~~l~~~~~~~~LW~~yL~~~q~~~~~f~v~~~~~~y~~ 127 (321)
T PF08424_consen 48 ERKLSILERALKHNPDSERLLLGYLEEGEKVWDSEKLAKKWEELLFKNPGSPELWREYLDFRQSNFASFTVSDVRDVYEK 127 (321)
T ss_pred HHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHCCCChHHHHHHHHHHHHHhccCcHHHHHHHHHH
Confidence 5678899999999999999999998999999999999999999999999998888766555443 111356677777777
Q ss_pred HHcc
Q 006120 331 ALKM 334 (660)
Q Consensus 331 al~l 334 (660)
+++.
T Consensus 128 ~l~~ 131 (321)
T PF08424_consen 128 CLRA 131 (321)
T ss_pred HHHH
Confidence 6643
No 290
>PF10345 Cohesin_load: Cohesin loading factor; InterPro: IPR019440 Cohesin loading factor is a conserved protein that has been characterised in fungi. It is associated with the cohesin complex and is required in G1 for cohesin binding to chromosomes, but is dispensable in G2 when cohesion has been established. It is often referred to as Ssl3 in Schizosaccharomyces pombe (Fission yeast), and Scc4 in Saccharomyces cerevisiae (Baker's yeast). It complexes with Mis4 [].
Probab=95.84 E-value=3.9 Score=46.64 Aligned_cols=195 Identities=15% Similarity=0.030 Sum_probs=131.2
Q ss_pred HHHHHHHHHHHHHHHHHHHhhc-cCcHHHHHHHHHHHHHHH-HcCCHHHHHHHHHHHHHhCCC--CH----HHHHHHHHH
Q 006120 97 STHDYAVFVKELGVLRNRADGA-RSREEAFDGHMAIGRVLY-EHQLFKEALVSFKRACELQPT--DV----RPHFRAGNC 168 (660)
Q Consensus 97 ~~~~~g~~~~Al~~l~~a~~~~-~~~~~~~~~~~~lg~~~~-~~g~~~~A~~~~~~al~~~p~--~~----~~~~~la~~ 168 (660)
+...+.-...|++.++...+.. ..+...+.+.+.+|.+++ ...+++.|..++++++.+... .. .+.+.++.+
T Consensus 30 l~~Y~kLI~~ai~CL~~~~~~~~l~p~~ea~~~l~la~iL~~eT~n~~~Ae~~L~k~~~l~~~~~~~d~k~~~~~ll~~i 109 (608)
T PF10345_consen 30 LKQYYKLIATAIKCLEAVLKQFKLSPRQEARVRLRLASILLEETENLDLAETYLEKAILLCERHRLTDLKFRCQFLLARI 109 (608)
T ss_pred HHHHHHHHHHHHHHHHHHhccCCCCHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhccccchHHHHHHHHHHHHHH
Confidence 3444556677788888777433 355666788999999998 789999999999999887643 22 345677888
Q ss_pred HHHcCCHHHHHHHHHHHHHHhccCCCchhchHHHHHHHH-HHHHHHCCCHHHHHHHHHHHHHhC--CCcHH----HHHHH
Q 006120 169 LYVLGRYREAKEEYLLALEAAETGGNQWAYLLPQIYVNL-GIALEGEGMVLSACEYYRESAILC--PTHFR----ALKLL 241 (660)
Q Consensus 169 ~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~l-a~~~~~~g~~~~A~~~~~~al~~~--p~~~~----~~~~l 241 (660)
+.+.+... |...+++.++.....+... ....+..+ .......+++..|++.++...... +.++. +....
T Consensus 110 ~~~~~~~~-a~~~l~~~I~~~~~~~~~~---w~~~frll~~~l~~~~~d~~~Al~~L~~~~~~a~~~~d~~~~v~~~l~~ 185 (608)
T PF10345_consen 110 YFKTNPKA-ALKNLDKAIEDSETYGHSA---WYYAFRLLKIQLALQHKDYNAALENLQSIAQLANQRGDPAVFVLASLSE 185 (608)
T ss_pred HHhcCHHH-HHHHHHHHHHHHhccCchh---HHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHhhhcCCHHHHHHHHHHH
Confidence 88888877 9999999999876633221 11222222 333333489999999999998875 34433 23334
Q ss_pred HHHHHHCCCHHHHHHHHHHHHHhCCC----------CHHHHHHHHH--HHHhCCChHHHHHHHHHH
Q 006120 242 GSALFGVGEYRAAVKALEEAIFIKPD----------YADAHCDLAS--ALHAMGEDERAIEVFQKA 295 (660)
Q Consensus 242 g~~~~~~g~~~~A~~~~~~al~~~p~----------~~~~~~~la~--~~~~~g~~~~A~~~~~~a 295 (660)
+.+....+..+++++.++++...... ...+|..+-. ++...|++..+...+++.
T Consensus 186 ~~l~l~~~~~~d~~~~l~~~~~~~~~~q~~~~~~~~qL~~~~lll~l~~~l~~~~~~~~~~~L~~l 251 (608)
T PF10345_consen 186 ALLHLRRGSPDDVLELLQRAIAQARSLQLDPSVHIPQLKALFLLLDLCCSLQQGDVKNSKQKLKQL 251 (608)
T ss_pred HHHHhcCCCchhHHHHHHHHHHHHhhcccCCCCCcHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 66667778888899988888553221 2344444433 445678877776665544
No 291
>PF13176 TPR_7: Tetratricopeptide repeat; PDB: 3SF4_C 3RO3_A 3RO2_A.
Probab=95.79 E-value=0.02 Score=37.89 Aligned_cols=30 Identities=30% Similarity=0.264 Sum_probs=18.9
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHhc
Q 006120 161 PHFRAGNCLYVLGRYREAKEEYLLALEAAE 190 (660)
Q Consensus 161 ~~~~la~~~~~~g~~~~A~~~~~~al~~~p 190 (660)
++.+||.+|...|++++|+++|++++.+..
T Consensus 1 al~~Lg~~~~~~g~~~~Ai~~y~~aL~l~~ 30 (36)
T PF13176_consen 1 ALNNLGRIYRQQGDYEKAIEYYEQALALAR 30 (36)
T ss_dssp HHHHHHHHHHHCT-HHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHcCCHHHHHHHHHHHHHhcc
Confidence 355667777777777777777777655443
No 292
>KOG0985 consensus Vesicle coat protein clathrin, heavy chain [Intracellular trafficking, secretion, and vesicular transport]
Probab=95.76 E-value=1.2 Score=51.18 Aligned_cols=204 Identities=20% Similarity=0.183 Sum_probs=134.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhccCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCC
Q 006120 95 EESTHDYAVFVKELGVLRNRADGARSREEAFDGHMAIGRVLYEHQLFKEALVSFKRACELQPTDVRPHFRAGNCLYVLGR 174 (660)
Q Consensus 95 ~~~~~~~g~~~~Al~~l~~a~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~ 174 (660)
+++....+.|++|...+.+.- -+... +-..--..++.+.|.++.++. +.+.+|..+|.+..+.|.
T Consensus 1055 a~iai~~~LyEEAF~ifkkf~----~n~~A------~~VLie~i~~ldRA~efAe~~-----n~p~vWsqlakAQL~~~~ 1119 (1666)
T KOG0985|consen 1055 AEIAIENQLYEEAFAIFKKFD----MNVSA------IQVLIENIGSLDRAYEFAERC-----NEPAVWSQLAKAQLQGGL 1119 (1666)
T ss_pred HHHHhhhhHHHHHHHHHHHhc----ccHHH------HHHHHHHhhhHHHHHHHHHhh-----CChHHHHHHHHHHHhcCc
Confidence 445555566666666555331 11111 111222345556666555443 568999999999999999
Q ss_pred HHHHHHHHHHHHHHhccCCCchhchHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCC--Cc------------------
Q 006120 175 YREAKEEYLLALEAAETGGNQWAYLLPQIYVNLGIALEGEGMVLSACEYYRESAILCP--TH------------------ 234 (660)
Q Consensus 175 ~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p--~~------------------ 234 (660)
..+|++.|-++- .+..|.....+..+.|.|++-+.++.-+-+... .-
T Consensus 1120 v~dAieSyikad-------------Dps~y~eVi~~a~~~~~~edLv~yL~MaRkk~~E~~id~eLi~AyAkt~rl~elE 1186 (1666)
T KOG0985|consen 1120 VKDAIESYIKAD-------------DPSNYLEVIDVASRTGKYEDLVKYLLMARKKVREPYIDSELIFAYAKTNRLTELE 1186 (1666)
T ss_pred hHHHHHHHHhcC-------------CcHHHHHHHHHHHhcCcHHHHHHHHHHHHHhhcCccchHHHHHHHHHhchHHHHH
Confidence 999999886642 445677778888899999999998887755321 11
Q ss_pred -------HHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhCCChHHHHHHHHHHHHhC--------
Q 006120 235 -------FRALKLLGSALFGVGEYRAAVKALEEAIFIKPDYADAHCDLASALHAMGEDERAIEVFQKAIDLK-------- 299 (660)
Q Consensus 235 -------~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~-------- 299 (660)
..-....|.-++..|.|+.|.-+|. +..-|..|+..+..+|+|+.|....++|-...
T Consensus 1187 ~fi~gpN~A~i~~vGdrcf~~~~y~aAkl~y~--------~vSN~a~La~TLV~LgeyQ~AVD~aRKAns~ktWK~Vcfa 1258 (1666)
T KOG0985|consen 1187 EFIAGPNVANIQQVGDRCFEEKMYEAAKLLYS--------NVSNFAKLASTLVYLGEYQGAVDAARKANSTKTWKEVCFA 1258 (1666)
T ss_pred HHhcCCCchhHHHHhHHHhhhhhhHHHHHHHH--------HhhhHHHHHHHHHHHHHHHHHHHHhhhccchhHHHHHHHH
Confidence 1111233555556666666655553 34567889999999999999999988874431
Q ss_pred ---C--------------CCHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHcccC
Q 006120 300 ---P--------------GHVDALYNLGGLYMDLGAGETEEAKKALKEALKMTN 336 (660)
Q Consensus 300 ---p--------------~~~~a~~~La~~~~~~~~g~~~eA~~~~~~al~l~p 336 (660)
. -+++-+-.+...|... |-+++-+..++.++-+..
T Consensus 1259 Cvd~~EFrlAQiCGL~iivhadeLeeli~~Yq~r--GyFeElIsl~Ea~LGLER 1310 (1666)
T KOG0985|consen 1259 CVDKEEFRLAQICGLNIIVHADELEELIEYYQDR--GYFEELISLLEAGLGLER 1310 (1666)
T ss_pred HhchhhhhHHHhcCceEEEehHhHHHHHHHHHhc--CcHHHHHHHHHhhhchhH
Confidence 0 0134455667777777 999999999999988763
No 293
>KOG4507 consensus Uncharacterized conserved protein, contains TPR repeats [Function unknown]
Probab=95.73 E-value=0.063 Score=57.42 Aligned_cols=105 Identities=17% Similarity=0.133 Sum_probs=90.2
Q ss_pred HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCcH--HHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHH
Q 006120 200 LPQIYVNLGIALEGEGMVLSACEYYRESAILCPTHF--RALKLLGSALFGVGEYRAAVKALEEAIFIKPDYADAHCDLAS 277 (660)
Q Consensus 200 ~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~--~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~ 277 (660)
....+..-+..+..+|+..+|..++..++...|... .++..+|.++.+.|...+|--++..|+.-.|.....++.++.
T Consensus 212 sw~lH~~as~YWR~~G~~~~A~~Ca~~a~hf~~~h~kdi~lLSlaTiL~RaG~sadA~iILhAA~~dA~~~t~n~y~l~~ 291 (886)
T KOG4507|consen 212 SWVLHNMASFYWRIKGEPYQAVECAMRALHFSSRHNKDIALLSLATVLHRAGFSADAAVILHAALDDADFFTSNYYTLGN 291 (886)
T ss_pred hHHHHHHHHHHHHHcCChhhhhHHHHHHhhhCCcccccchhhhHHHHHHHcccccchhheeehhccCCccccccceeHHH
Confidence 444444445555678999999999999999887764 378889999999999999999999999988888888999999
Q ss_pred HHHhCCChHHHHHHHHHHHHhCCCCHH
Q 006120 278 ALHAMGEDERAIEVFQKAIDLKPGHVD 304 (660)
Q Consensus 278 ~~~~~g~~~~A~~~~~~al~~~p~~~~ 304 (660)
++..++++......|..+.+..|....
T Consensus 292 i~aml~~~N~S~~~ydha~k~~p~f~q 318 (886)
T KOG4507|consen 292 IYAMLGEYNHSVLCYDHALQARPGFEQ 318 (886)
T ss_pred HHHHHhhhhhhhhhhhhhhccCcchhH
Confidence 999999999999999999999887643
No 294
>PF13176 TPR_7: Tetratricopeptide repeat; PDB: 3SF4_C 3RO3_A 3RO2_A.
Probab=95.71 E-value=0.02 Score=37.91 Aligned_cols=25 Identities=28% Similarity=0.489 Sum_probs=13.0
Q ss_pred HHHHHHHHHhCCChHHHHHHHHHHH
Q 006120 272 HCDLASALHAMGEDERAIEVFQKAI 296 (660)
Q Consensus 272 ~~~la~~~~~~g~~~~A~~~~~~al 296 (660)
|.+||.+|..+|++++|+.+|++++
T Consensus 2 l~~Lg~~~~~~g~~~~Ai~~y~~aL 26 (36)
T PF13176_consen 2 LNNLGRIYRQQGDYEKAIEYYEQAL 26 (36)
T ss_dssp HHHHHHHHHHCT-HHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 4455555555555555555555533
No 295
>PF12968 DUF3856: Domain of Unknown Function (DUF3856); InterPro: IPR024552 This domain of unknown function is found in a small group of tetratricopeptide-like proteins, which includes the uncharacterised protein Q8KAL8 from SWISSPROT. The structure of Q8KAL8 is known and belongs to the SCOP all alpha class, TPR-like superfamily, CT2138-like family.; PDB: 2HR2_D.
Probab=95.70 E-value=0.33 Score=41.24 Aligned_cols=105 Identities=26% Similarity=0.242 Sum_probs=70.5
Q ss_pred HHHHHHH--HHHHHcCCHHHHHHHHHHHHHhCCC------------CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhcc
Q 006120 126 DGHMAIG--RVLYEHQLFKEALVSFKRACELQPT------------DVRPHFRAGNCLYVLGRYREAKEEYLLALEAAET 191 (660)
Q Consensus 126 ~~~~~lg--~~~~~~g~~~~A~~~~~~al~~~p~------------~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~ 191 (660)
.+|..++ .-.+..|-|++|...++++.+.... ++-++..|+..+..+|+|++++....+++.....
T Consensus 8 ~aY~aLs~ae~ql~~g~~~eAa~s~r~AM~~srtiP~eEaFDh~GFDA~chA~Ls~A~~~Lgry~e~L~sA~~aL~YFNR 87 (144)
T PF12968_consen 8 MAYMALSDAERQLQDGAYEEAAASCRKAMEVSRTIPAEEAFDHDGFDAFCHAGLSGALAGLGRYDECLQSADRALRYFNR 87 (144)
T ss_dssp HHHHHHHHHHHHHHHT-HHHHHHHHHHHHHHHTTS-TTS---HHHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHhccCChHhhcccccHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHHHhh
Confidence 4444443 3445678899999999999887422 2456788899999999999999998888876543
Q ss_pred CCCchh---chHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh
Q 006120 192 GGNQWA---YLLPQIYVNLGIALEGEGMVLSACEYYRESAIL 230 (660)
Q Consensus 192 ~~~~~~---~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~ 230 (660)
.+.... .+...+.++.+..+...|+.++|+..|+.+-++
T Consensus 88 RGEL~qdeGklWIaaVfsra~Al~~~Gr~~eA~~~fr~agEM 129 (144)
T PF12968_consen 88 RGELHQDEGKLWIAAVFSRAVALEGLGRKEEALKEFRMAGEM 129 (144)
T ss_dssp H--TTSTHHHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHH
T ss_pred ccccccccchhHHHHHHHHHHHHHhcCChHHHHHHHHHHHHH
Confidence 222111 113455667778888888888888888877553
No 296
>PF07079 DUF1347: Protein of unknown function (DUF1347); InterPro: IPR010764 This family consists of several hypothetical bacterial proteins of around 610 residues in length. Members of this family are highly conserved and seem to be specific to Chlamydia species. The function of this family is unknown.
Probab=95.69 E-value=3.5 Score=43.52 Aligned_cols=86 Identities=20% Similarity=0.151 Sum_probs=65.0
Q ss_pred HHHHHHCCC-HHHHHHHHHHHHHhCCCCHHH----------------------------------------------HHH
Q 006120 242 GSALFGVGE-YRAAVKALEEAIFIKPDYADA----------------------------------------------HCD 274 (660)
Q Consensus 242 g~~~~~~g~-~~~A~~~~~~al~~~p~~~~~----------------------------------------------~~~ 274 (660)
|.-+.+.|. -++|+..++.+++..+.+... -+.
T Consensus 386 Ak~lW~~g~~dekalnLLk~il~ft~yD~ec~n~v~~fvKq~Y~qaLs~~~~~rLlkLe~fi~e~gl~~i~i~e~eian~ 465 (549)
T PF07079_consen 386 AKHLWEIGQCDEKALNLLKLILQFTNYDIECENIVFLFVKQAYKQALSMHAIPRLLKLEDFITEVGLTPITISEEEIANF 465 (549)
T ss_pred HHHHHhcCCccHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhcCCCcccccHHHHHHH
Confidence 445566666 778888888887776554221 122
Q ss_pred H--HHHHHhCCChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCCCHHHHHHHHHH
Q 006120 275 L--ASALHAMGEDERAIEVFQKAIDLKPGHVDALYNLGGLYMDLGAGETEEAKKALKE 330 (660)
Q Consensus 275 l--a~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~La~~~~~~~~g~~~eA~~~~~~ 330 (660)
| |..+..+|+|.++.-+-.-..+++| .+.++..+|.++... .+|++|..++..
T Consensus 466 LaDAEyLysqgey~kc~~ys~WL~~iaP-S~~~~RLlGl~l~e~--k~Y~eA~~~l~~ 520 (549)
T PF07079_consen 466 LADAEYLYSQGEYHKCYLYSSWLTKIAP-SPQAYRLLGLCLMEN--KRYQEAWEYLQK 520 (549)
T ss_pred HHHHHHHHhcccHHHHHHHHHHHHHhCC-cHHHHHHHHHHHHHH--hhHHHHHHHHHh
Confidence 2 3445678999999988888889999 799999999999988 899999998875
No 297
>cd02335 ZZ_ADA2 Zinc finger, ZZ type. Zinc finger present in ADA2, a putative transcriptional adaptor, and related proteins. The ZZ motif coordinates two zinc ions and most likely participates in ligand binding or molecular scaffolding.
Probab=95.64 E-value=0.0071 Score=43.26 Aligned_cols=36 Identities=33% Similarity=0.665 Sum_probs=30.2
Q ss_pred cccccccccccc-cccccccc-ccccccccccCCCCCC
Q 006120 591 HVCSVCRYPIIG-SRFKEMKS-HFSLCSQCYSEGKVPP 626 (660)
Q Consensus 591 ~~~~~~~~~~~~-~~~~~~~~-~~~~~~~~~~~~~~~~ 626 (660)
++|..|+-+|++ .|||=+.- +|.||..|++.|+.+.
T Consensus 1 ~~Cd~C~~~~~~g~r~~C~~C~d~dLC~~Cf~~g~~~~ 38 (49)
T cd02335 1 YHCDYCSKDITGTIRIKCAECPDFDLCLECFSAGAEIG 38 (49)
T ss_pred CCCCCcCCCCCCCcEEECCCCCCcchhHHhhhCcCCCC
Confidence 469999987776 99997665 8999999999998753
No 298
>KOG3824 consensus Huntingtin interacting protein HYPE [General function prediction only]
Probab=95.61 E-value=0.041 Score=54.27 Aligned_cols=74 Identities=19% Similarity=0.171 Sum_probs=59.3
Q ss_pred HHHHHHHHHCCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHH
Q 006120 205 VNLGIALEGEGMVLSACEYYRESAILCPTHFRALKLLGSALFGVGEYRAAVKALEEAIFIKPDYADAHCDLASA 278 (660)
Q Consensus 205 ~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~ 278 (660)
.+.+.-....|+.++|...|+.|+.+.|++++++..+|......++.-+|-.+|-+|+.++|.+.+++.+.+..
T Consensus 120 l~~A~~~~~~Gk~ekA~~lfeHAlalaP~~p~~L~e~G~f~E~~~~iv~ADq~Y~~ALtisP~nseALvnR~RT 193 (472)
T KOG3824|consen 120 LKAAGRSRKDGKLEKAMTLFEHALALAPTNPQILIEMGQFREMHNEIVEADQCYVKALTISPGNSEALVNRART 193 (472)
T ss_pred HHHHHHHHhccchHHHHHHHHHHHhcCCCCHHHHHHHhHHHHhhhhhHhhhhhhheeeeeCCCchHHHhhhhcc
Confidence 34444556678888888888888888888888888888888888888888888888888888888887776544
No 299
>KOG3783 consensus Uncharacterized conserved protein [Function unknown]
Probab=95.55 E-value=2.4 Score=45.67 Aligned_cols=68 Identities=29% Similarity=0.346 Sum_probs=54.8
Q ss_pred HHHHHHHHHhCCChHHHHHHHHHHHHhC---CC----CHHHHHHHHHHHHHhcCCC-HHHHHHHHHHHHcccCChhHH
Q 006120 272 HCDLASALHAMGEDERAIEVFQKAIDLK---PG----HVDALYNLGGLYMDLGAGE-TEEAKKALKEALKMTNRVELH 341 (660)
Q Consensus 272 ~~~la~~~~~~g~~~~A~~~~~~al~~~---p~----~~~a~~~La~~~~~~~~g~-~~eA~~~~~~al~l~p~~~~~ 341 (660)
+..+|.++..+|+...|..+|...++.. .. .|.+++.+|.++..+ |. ..++.+++.+|-+...+.+..
T Consensus 452 ~lL~g~~lR~Lg~~~~a~~~f~i~~~~e~~~~~d~w~~PfA~YElA~l~~~~--~g~~~e~~~~L~kAr~~~~dY~le 527 (546)
T KOG3783|consen 452 YLLKGVILRNLGDSEVAPKCFKIQVEKESKRTEDLWAVPFALYELALLYWDL--GGGLKEARALLLKAREYASDYELE 527 (546)
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHHHhhccccccccHHHHHHHHHHHhc--ccChHHHHHHHHHHHhhccccchh
Confidence 5678999999999999999999887431 11 267999999999998 55 999999999998887665543
No 300
>PF13174 TPR_6: Tetratricopeptide repeat; PDB: 3QKY_A 2XEV_A 3URZ_B 2Q7F_A.
Probab=95.54 E-value=0.026 Score=36.22 Aligned_cols=31 Identities=23% Similarity=0.370 Sum_probs=17.6
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC
Q 006120 127 GHMAIGRVLYEHQLFKEALVSFKRACELQPT 157 (660)
Q Consensus 127 ~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~ 157 (660)
+++.+|.++...|++++|+..|+++++..|+
T Consensus 2 a~~~~a~~~~~~g~~~~A~~~~~~~~~~~P~ 32 (33)
T PF13174_consen 2 ALYRLARCYYKLGDYDEAIEYFQRLIKRYPD 32 (33)
T ss_dssp HHHHHHHHHHHHCHHHHHHHHHHHHHHHSTT
T ss_pred HHHHHHHHHHHccCHHHHHHHHHHHHHHCcC
Confidence 4455555555555555555555555555554
No 301
>PF04910 Tcf25: Transcriptional repressor TCF25; InterPro: IPR006994 This entry appears to represent a novel family of basic helix-loop-helix (bHLH) proteins that control differentiation and development of a variety of organs [, ]. Human Nulp1 (Q2MK75 from SWISSPROT) is a basic helix-loop-helix protein expressed broadly during early embryonic organogenesis. Over expression of human Nulp1 in COS-7 cells inhibits the transcriptional activity of serum response factor (SRF), suggesting that Nulp1 may act as a novel bHLH transcriptional repressor in the SRF signalling pathway to mediate cellular functions [].
Probab=95.48 E-value=0.6 Score=49.11 Aligned_cols=142 Identities=15% Similarity=0.091 Sum_probs=107.6
Q ss_pred HHHhccCCCchhchHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh--------------C------------CCc---HH
Q 006120 186 LEAAETGGNQWAYLLPQIYVNLGIALEGEGMVLSACEYYRESAIL--------------C------------PTH---FR 236 (660)
Q Consensus 186 l~~~p~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~--------------~------------p~~---~~ 236 (660)
+..+|- ...++..++.++..+|+.+.|.+.+++|+-. + +.| ..
T Consensus 33 l~~~Py--------HidtLlqls~v~~~~gd~~~A~~lleRALf~~e~~~~~~F~~~~~~~~~g~~rL~~~~~eNR~ffl 104 (360)
T PF04910_consen 33 LQKNPY--------HIDTLLQLSEVYRQQGDHAQANDLLERALFAFERAFHPSFSPFRSNLTSGNCRLDYRRPENRQFFL 104 (360)
T ss_pred HHHCCC--------cHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHHHHhhhhhcccccCccccCCccccchHHHH
Confidence 456676 8899999999999999999999999999632 1 112 22
Q ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHhCCC-CHHHHH-HHHHHHHhCCChHHHHHHHHHHHHhCC-----CCHHHHHHH
Q 006120 237 ALKLLGSALFGVGEYRAAVKALEEAIFIKPD-YADAHC-DLASALHAMGEDERAIEVFQKAIDLKP-----GHVDALYNL 309 (660)
Q Consensus 237 ~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~-~la~~~~~~g~~~~A~~~~~~al~~~p-----~~~~a~~~L 309 (660)
+.+.....+.+.|-+..|.++.+-.+.++|. |+..-. .+-....+.++++--+..++....... ..+..-+.+
T Consensus 105 al~r~i~~L~~RG~~rTAlE~~KlLlsLdp~~DP~g~ll~ID~~ALrs~~y~~Li~~~~~~~~~~~~~~~~~lPn~a~S~ 184 (360)
T PF04910_consen 105 ALFRYIQSLGRRGCWRTALEWCKLLLSLDPDEDPLGVLLFIDYYALRSRQYQWLIDFSESPLAKCYRNWLSLLPNFAFSI 184 (360)
T ss_pred HHHHHHHHHHhcCcHHHHHHHHHHHHhcCCCCCcchhHHHHHHHHHhcCCHHHHHHHHHhHhhhhhhhhhhhCccHHHHH
Confidence 5566778888999999999999999999998 665444 344445677888877777776655211 123566777
Q ss_pred HHHHHHhcCCCH---------------HHHHHHHHHHHcccCC
Q 006120 310 GGLYMDLGAGET---------------EEAKKALKEALKMTNR 337 (660)
Q Consensus 310 a~~~~~~~~g~~---------------~eA~~~~~~al~l~p~ 337 (660)
+.++..+ ++. ++|...+++|+..-|.
T Consensus 185 aLA~~~l--~~~~~~~~~~~~~~~~~~~~A~~~L~~Ai~~fP~ 225 (360)
T PF04910_consen 185 ALAYFRL--EKEESSQSSAQSGRSENSESADEALQKAILRFPW 225 (360)
T ss_pred HHHHHHh--cCccccccccccccccchhHHHHHHHHHHHHhHH
Confidence 7777777 666 8999999999999876
No 302
>KOG1258 consensus mRNA processing protein [RNA processing and modification]
Probab=95.48 E-value=2.2 Score=46.49 Aligned_cols=170 Identities=12% Similarity=0.019 Sum_probs=134.9
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhccCCCchhchHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCcHHH
Q 006120 159 VRPHFRAGNCLYVLGRYREAKEEYLLALEAAETGGNQWAYLLPQIYVNLGIALEGEGMVLSACEYYRESAILC-PTHFRA 237 (660)
Q Consensus 159 ~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~-p~~~~~ 237 (660)
...|......-...|+++...-.|++++--... ....|...+......|+.+-|...+.++.+.. |+.+..
T Consensus 297 l~nw~~yLdf~i~~g~~~~~~~l~ercli~cA~--------Y~efWiky~~~m~~~~~~~~~~~~~~~~~~i~~k~~~~i 368 (577)
T KOG1258|consen 297 LKNWRYYLDFEITLGDFSRVFILFERCLIPCAL--------YDEFWIKYARWMESSGDVSLANNVLARACKIHVKKTPII 368 (577)
T ss_pred HHHHHHHhhhhhhcccHHHHHHHHHHHHhHHhh--------hHHHHHHHHHHHHHcCchhHHHHHHHhhhhhcCCCCcHH
Confidence 355666677778899999999999999977665 78999999999999999999999999988874 666777
Q ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhCCChHHHHHHHHHHHH-hCC--CC----HHHHHHHH
Q 006120 238 LKLLGSALFGVGEYRAAVKALEEAIFIKPDYADAHCDLASALHAMGEDERAIEVFQKAID-LKP--GH----VDALYNLG 310 (660)
Q Consensus 238 ~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~-~~p--~~----~~a~~~La 310 (660)
...-+.+....|++..|...+++..+-.|+...+-.........+|+.+.+.. ....+. ..+ .+ ...+...+
T Consensus 369 ~L~~a~f~e~~~n~~~A~~~lq~i~~e~pg~v~~~l~~~~~e~r~~~~~~~~~-~~~l~s~~~~~~~~~~i~~~l~~~~~ 447 (577)
T KOG1258|consen 369 HLLEARFEESNGNFDDAKVILQRIESEYPGLVEVVLRKINWERRKGNLEDANY-KNELYSSIYEGKENNGILEKLYVKFA 447 (577)
T ss_pred HHHHHHHHHhhccHHHHHHHHHHHHhhCCchhhhHHHHHhHHHHhcchhhhhH-HHHHHHHhcccccCcchhHHHHHHHH
Confidence 78888888889999999999999999889988888888888889999998885 222222 211 11 23445555
Q ss_pred HHHHHhcCCCHHHHHHHHHHHHcccCCh
Q 006120 311 GLYMDLGAGETEEAKKALKEALKMTNRV 338 (660)
Q Consensus 311 ~~~~~~~~g~~~eA~~~~~~al~l~p~~ 338 (660)
....... ++.+.|...+.++++..|..
T Consensus 448 r~~~~i~-~d~~~a~~~l~~~~~~~~~~ 474 (577)
T KOG1258|consen 448 RLRYKIR-EDADLARIILLEANDILPDC 474 (577)
T ss_pred HHHHHHh-cCHHHHHHHHHHhhhcCCcc
Confidence 5544432 89999999999999998863
No 303
>KOG3824 consensus Huntingtin interacting protein HYPE [General function prediction only]
Probab=95.46 E-value=0.048 Score=53.80 Aligned_cols=72 Identities=19% Similarity=0.241 Sum_probs=64.3
Q ss_pred HHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhCCChHHHHHHHHHHHHhCCCCHHHHHHHHHH
Q 006120 241 LGSALFGVGEYRAAVKALEEAIFIKPDYADAHCDLASALHAMGEDERAIEVFQKAIDLKPGHVDALYNLGGL 312 (660)
Q Consensus 241 lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~La~~ 312 (660)
.+.-..+.|+.++|...|+.|+.+.|++++++..+|......++.-+|-.+|-+|+.++|.+.+++.+.+..
T Consensus 122 ~A~~~~~~Gk~ekA~~lfeHAlalaP~~p~~L~e~G~f~E~~~~iv~ADq~Y~~ALtisP~nseALvnR~RT 193 (472)
T KOG3824|consen 122 AAGRSRKDGKLEKAMTLFEHALALAPTNPQILIEMGQFREMHNEIVEADQCYVKALTISPGNSEALVNRART 193 (472)
T ss_pred HHHHHHhccchHHHHHHHHHHHhcCCCCHHHHHHHhHHHHhhhhhHhhhhhhheeeeeCCCchHHHhhhhcc
Confidence 344456789999999999999999999999999999999999999999999999999999999988876653
No 304
>PF09613 HrpB1_HrpK: Bacterial type III secretion protein (HrpB1_HrpK); InterPro: IPR013394 This family of proteins is encoded by genes found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia.
Probab=95.42 E-value=0.97 Score=41.05 Aligned_cols=75 Identities=16% Similarity=0.145 Sum_probs=36.4
Q ss_pred HHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhCCChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHh
Q 006120 242 GSALFGVGEYRAAVKALEEAIFIKPDYADAHCDLASALHAMGEDERAIEVFQKAIDLKPGHVDALYNLGGLYMDL 316 (660)
Q Consensus 242 g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~La~~~~~~ 316 (660)
..+-...++.+++...+...-.+.|+.+..-..-|.++...|++.+|+..++.+..-.|..+.+--.++.++..+
T Consensus 17 ~~~al~~~~~~D~e~lL~ALrvLRP~~~e~~~~~~~l~i~r~~w~dA~rlLr~l~~~~~~~p~~kALlA~CL~~~ 91 (160)
T PF09613_consen 17 LSVALRLGDPDDAEALLDALRVLRPEFPELDLFDGWLHIVRGDWDDALRLLRELEERAPGFPYAKALLALCLYAL 91 (160)
T ss_pred HHHHHccCChHHHHHHHHHHHHhCCCchHHHHHHHHHHHHhCCHHHHHHHHHHHhccCCCChHHHHHHHHHHHHc
Confidence 333344444445554444444445555555555555555555555555555554444444444444444444444
No 305
>PF07079 DUF1347: Protein of unknown function (DUF1347); InterPro: IPR010764 This family consists of several hypothetical bacterial proteins of around 610 residues in length. Members of this family are highly conserved and seem to be specific to Chlamydia species. The function of this family is unknown.
Probab=95.39 E-value=3.8 Score=43.22 Aligned_cols=56 Identities=14% Similarity=0.043 Sum_probs=42.6
Q ss_pred HHHHHHHHhhccCcHHHHHHHHHHHHHHHHcCC-HHHHHHHHHHHHHhCCCCHHHHH
Q 006120 108 LGVLRNRADGARSREEAFDGHMAIGRVLYEHQL-FKEALVSFKRACELQPTDVRPHF 163 (660)
Q Consensus 108 l~~l~~a~~~~~~~~~~~~~~~~lg~~~~~~g~-~~~A~~~~~~al~~~p~~~~~~~ 163 (660)
+..+...-...-+....+.-+..-|.-+++.|. -++|+..++.+++..+.+.....
T Consensus 362 L~lwe~~qs~DiDrqQLvh~L~~~Ak~lW~~g~~dekalnLLk~il~ft~yD~ec~n 418 (549)
T PF07079_consen 362 LNLWEEIQSYDIDRQQLVHYLVFGAKHLWEIGQCDEKALNLLKLILQFTNYDIECEN 418 (549)
T ss_pred HHHHHHHHhhcccHHHHHHHHHHHHHHHHhcCCccHHHHHHHHHHHHhccccHHHHH
Confidence 445555544555666677778888999999998 88999999999999988775443
No 306
>cd02337 ZZ_CBP Zinc finger, ZZ type. Zinc finger present in CBP/p300 and related proteins. The ZZ motif coordinates two zinc ions and most likely participates in ligand binding or molecular scaffolding. CREB-binding protein (CBP) is a large multidomain protein that provides binding sites for transcriptional coactivators, the role of the ZZ domain in CBP/p300 is unclear.
Probab=95.39 E-value=0.0078 Score=41.05 Aligned_cols=37 Identities=22% Similarity=0.653 Sum_probs=29.3
Q ss_pred ccccccccccccccccc-cccccccccccccCCCCCCCC
Q 006120 591 HVCSVCRYPIIGSRFKE-MKSHFSLCSQCYSEGKVPPTF 628 (660)
Q Consensus 591 ~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~ 628 (660)
++|..|.- ++|+||+= +-..|-||.+|++.++=|-.+
T Consensus 1 y~C~~C~~-~~~~r~~C~~C~dfDLC~~C~~~~~H~H~~ 38 (41)
T cd02337 1 YTCNECKH-HVETRWHCTVCEDYDLCITCYNTKNHPHKM 38 (41)
T ss_pred CcCCCCCC-cCCCceECCCCcchhhHHHHhCCCCCCccc
Confidence 47999988 78999983 445899999999987765443
No 307
>PF12968 DUF3856: Domain of Unknown Function (DUF3856); InterPro: IPR024552 This domain of unknown function is found in a small group of tetratricopeptide-like proteins, which includes the uncharacterised protein Q8KAL8 from SWISSPROT. The structure of Q8KAL8 is known and belongs to the SCOP all alpha class, TPR-like superfamily, CT2138-like family.; PDB: 2HR2_D.
Probab=95.32 E-value=1.4 Score=37.51 Aligned_cols=104 Identities=21% Similarity=0.072 Sum_probs=67.1
Q ss_pred HHHHHH--HHHHHcCCHHHHHHHHHHHHHHhccCCCchh----chHHHHHHHHHHHHHHCCCHHHHHHHHHHHHH-----
Q 006120 161 PHFRAG--NCLYVLGRYREAKEEYLLALEAAETGGNQWA----YLLPQIYVNLGIALEGEGMVLSACEYYRESAI----- 229 (660)
Q Consensus 161 ~~~~la--~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~----~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~----- 229 (660)
+|..|+ .-.+..|-|++|...++++.+...+.+.... --.+..+-.|+..+..+|+|++++....+++.
T Consensus 9 aY~aLs~ae~ql~~g~~~eAa~s~r~AM~~srtiP~eEaFDh~GFDA~chA~Ls~A~~~Lgry~e~L~sA~~aL~YFNRR 88 (144)
T PF12968_consen 9 AYMALSDAERQLQDGAYEEAAASCRKAMEVSRTIPAEEAFDHDGFDAFCHAGLSGALAGLGRYDECLQSADRALRYFNRR 88 (144)
T ss_dssp HHHHHHHHHHHHHHT-HHHHHHHHHHHHHHHTTS-TTS---HHHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhhhHHHHHHHHHHHHHHhccCChHhhcccccHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHHHhhc
Confidence 444443 3345678999999999999998766543221 11456777888889999999988877766664
Q ss_pred --hCCCcHH----HHHHHHHHHHHCCCHHHHHHHHHHHHHh
Q 006120 230 --LCPTHFR----ALKLLGSALFGVGEYRAAVKALEEAIFI 264 (660)
Q Consensus 230 --~~p~~~~----~~~~lg~~~~~~g~~~~A~~~~~~al~~ 264 (660)
++.+... +.++.+..+...|+.++|+..|+.+-++
T Consensus 89 GEL~qdeGklWIaaVfsra~Al~~~Gr~~eA~~~fr~agEM 129 (144)
T PF12968_consen 89 GELHQDEGKLWIAAVFSRAVALEGLGRKEEALKEFRMAGEM 129 (144)
T ss_dssp --TTSTHHHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHH
T ss_pred cccccccchhHHHHHHHHHHHHHhcCChHHHHHHHHHHHHH
Confidence 3444433 3345666777777777777777766554
No 308
>PF13174 TPR_6: Tetratricopeptide repeat; PDB: 3QKY_A 2XEV_A 3URZ_B 2Q7F_A.
Probab=95.29 E-value=0.027 Score=36.08 Aligned_cols=28 Identities=36% Similarity=0.520 Sum_probs=11.7
Q ss_pred HHHHHHHHhCCChHHHHHHHHHHHHhCC
Q 006120 273 CDLASALHAMGEDERAIEVFQKAIDLKP 300 (660)
Q Consensus 273 ~~la~~~~~~g~~~~A~~~~~~al~~~p 300 (660)
+.+|.++...|++++|+..|+++++..|
T Consensus 4 ~~~a~~~~~~g~~~~A~~~~~~~~~~~P 31 (33)
T PF13174_consen 4 YRLARCYYKLGDYDEAIEYFQRLIKRYP 31 (33)
T ss_dssp HHHHHHHHHHCHHHHHHHHHHHHHHHST
T ss_pred HHHHHHHHHccCHHHHHHHHHHHHHHCc
Confidence 3444444444444444444444444433
No 309
>PF09613 HrpB1_HrpK: Bacterial type III secretion protein (HrpB1_HrpK); InterPro: IPR013394 This family of proteins is encoded by genes found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia.
Probab=95.18 E-value=0.39 Score=43.59 Aligned_cols=87 Identities=18% Similarity=0.094 Sum_probs=78.9
Q ss_pred HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHH
Q 006120 200 LPQIYVNLGIALEGEGMVLSACEYYRESAILCPTHFRALKLLGSALFGVGEYRAAVKALEEAIFIKPDYADAHCDLASAL 279 (660)
Q Consensus 200 ~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~ 279 (660)
....+..+..+-...++.+++...+...--+.|..+..-..-|.++...|++.+|+..++.+.+..|..+.+-..++.|+
T Consensus 9 iv~gLie~~~~al~~~~~~D~e~lL~ALrvLRP~~~e~~~~~~~l~i~r~~w~dA~rlLr~l~~~~~~~p~~kALlA~CL 88 (160)
T PF09613_consen 9 IVGGLIEVLSVALRLGDPDDAEALLDALRVLRPEFPELDLFDGWLHIVRGDWDDALRLLRELEERAPGFPYAKALLALCL 88 (160)
T ss_pred HHHHHHHHHHHHHccCChHHHHHHHHHHHHhCCCchHHHHHHHHHHHHhCCHHHHHHHHHHHhccCCCChHHHHHHHHHH
Confidence 45566777777888899999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HhCCChH
Q 006120 280 HAMGEDE 286 (660)
Q Consensus 280 ~~~g~~~ 286 (660)
..+|+.+
T Consensus 89 ~~~~D~~ 95 (160)
T PF09613_consen 89 YALGDPS 95 (160)
T ss_pred HHcCChH
Confidence 8888764
No 310
>PRK10941 hypothetical protein; Provisional
Probab=95.17 E-value=0.25 Score=49.43 Aligned_cols=75 Identities=15% Similarity=0.086 Sum_probs=54.3
Q ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhCCChHHHHHHHHHHHHhCCCCHHHHHHHHH
Q 006120 237 ALKLLGSALFGVGEYRAAVKALEEAIFIKPDYADAHCDLASALHAMGEDERAIEVFQKAIDLKPGHVDALYNLGG 311 (660)
Q Consensus 237 ~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~La~ 311 (660)
.+.++-.++.+.++++.|+.+.+..+.+.|+++.-+...|.+|.++|.+..|..-++..++..|+++.+-.....
T Consensus 183 ml~nLK~~~~~~~~~~~AL~~~e~ll~l~P~dp~e~RDRGll~~qL~c~~~A~~DL~~fl~~~P~dp~a~~ik~q 257 (269)
T PRK10941 183 LLDTLKAALMEEKQMELALRASEALLQFDPEDPYEIRDRGLIYAQLDCEHVALSDLSYFVEQCPEDPISEMIRAQ 257 (269)
T ss_pred HHHHHHHHHHHcCcHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCcHHHHHHHHHHHHhCCCchhHHHHHHH
Confidence 455666677777777777777777777777777777777777777777777777777777777777665544433
No 311
>PF04781 DUF627: Protein of unknown function (DUF627); InterPro: IPR006866 This domain represents the N-terminal region of several plant proteins of unknown function.
Probab=95.13 E-value=0.16 Score=42.85 Aligned_cols=93 Identities=18% Similarity=0.121 Sum_probs=46.9
Q ss_pred HHHHHHcCCHHHHHHHHHHHHHHhccCCCchhchHHHHHHHHHHHHHHCCC-----------HHHHHHHHHHHHHhCCCc
Q 006120 166 GNCLYVLGRYREAKEEYLLALEAAETGGNQWAYLLPQIYVNLGIALEGEGM-----------VLSACEYYRESAILCPTH 234 (660)
Q Consensus 166 a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~la~~~~~~g~-----------~~~A~~~~~~al~~~p~~ 234 (660)
|.-++..|++-+|++..+..+...++.... ...+...|.++..+.. .-.+++.+.++..+.|..
T Consensus 3 A~~~~~rGnhiKAL~iied~i~~h~~~~~~-----~~lh~~QG~if~~lA~~ten~d~k~~yLl~sve~~s~a~~Lsp~~ 77 (111)
T PF04781_consen 3 AKDYFARGNHIKALEIIEDLISRHGEDESS-----WLLHRLQGTIFYKLAKKTENPDVKFRYLLGSVECFSRAVELSPDS 77 (111)
T ss_pred HHHHHHccCHHHHHHHHHHHHHHccCCCch-----HHHHHHHhHHHHHHHHhccCchHHHHHHHHhHHHHHHHhccChhH
Confidence 455666777777777777777766654332 1334444444432211 112444455555555555
Q ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Q 006120 235 FRALKLLGSALFGVGEYRAAVKALEEAIF 263 (660)
Q Consensus 235 ~~~~~~lg~~~~~~g~~~~A~~~~~~al~ 263 (660)
+..++.+|.-+-....|++++.-.++++.
T Consensus 78 A~~L~~la~~l~s~~~Ykk~v~kak~~Ls 106 (111)
T PF04781_consen 78 AHSLFELASQLGSVKYYKKAVKKAKRGLS 106 (111)
T ss_pred HHHHHHHHHHhhhHHHHHHHHHHHHHHhc
Confidence 55555555444444444444444444443
No 312
>KOG1464 consensus COP9 signalosome, subunit CSN2 [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=95.08 E-value=0.75 Score=44.89 Aligned_cols=194 Identities=19% Similarity=0.149 Sum_probs=121.2
Q ss_pred CCHHHHHHHHHHHHHhCCCCH----HHHHHHHHHHHHcCCHHHHHHHHHHHHHHhccCCCchhchHHHHHHHHHHHHHHC
Q 006120 139 QLFKEALVSFKRACELQPTDV----RPHFRAGNCLYVLGRYREAKEEYLLALEAAETGGNQWAYLLPQIYVNLGIALEGE 214 (660)
Q Consensus 139 g~~~~A~~~~~~al~~~p~~~----~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~la~~~~~~ 214 (660)
.+.++|+..|++++++.+... .++-.+..+++.++++++-.+.|.+.+..-........ .......+-..-...
T Consensus 41 ~~p~~Al~sF~kVlelEgEKgeWGFKALKQmiKI~f~l~~~~eMm~~Y~qlLTYIkSAVTrNy--SEKsIN~IlDyiStS 118 (440)
T KOG1464|consen 41 DEPKEALSSFQKVLELEGEKGEWGFKALKQMIKINFRLGNYKEMMERYKQLLTYIKSAVTRNY--SEKSINSILDYISTS 118 (440)
T ss_pred cCHHHHHHHHHHHHhcccccchhHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHHHHHhccc--cHHHHHHHHHHHhhh
Confidence 478899999999999887653 46667788889999999999998888765432111000 111222222222233
Q ss_pred CCHHHHHHHHHHHHHh--CCCcHH----HHHHHHHHHHHCCCHHHHHHHHHHHHHhCC------------CCHHHHHHHH
Q 006120 215 GMVLSACEYYRESAIL--CPTHFR----ALKLLGSALFGVGEYRAAVKALEEAIFIKP------------DYADAHCDLA 276 (660)
Q Consensus 215 g~~~~A~~~~~~al~~--~p~~~~----~~~~lg~~~~~~g~~~~A~~~~~~al~~~p------------~~~~~~~~la 276 (660)
.+.+--.+.|+..+.. +..+.. ....||.+++..++|..-.+.+++.-.... ...++|..-.
T Consensus 119 ~~m~LLQ~FYeTTL~ALkdAKNeRLWFKTNtKLgkl~fd~~e~~kl~KIlkqLh~SCq~edGedD~kKGtQLLEiYAlEI 198 (440)
T KOG1464|consen 119 KNMDLLQEFYETTLDALKDAKNERLWFKTNTKLGKLYFDRGEYTKLQKILKQLHQSCQTEDGEDDQKKGTQLLEIYALEI 198 (440)
T ss_pred hhhHHHHHHHHHHHHHHHhhhcceeeeeccchHhhhheeHHHHHHHHHHHHHHHHHhccccCchhhhccchhhhhHhhHh
Confidence 3344444444444332 222323 335689999999998887777776554421 1145666667
Q ss_pred HHHHhCCChHHHHHHHHHHHHhCCCCH--HHHHH----HHHHHHHhcCCCHHHHHHHHHHHHcccC
Q 006120 277 SALHAMGEDERAIEVFQKAIDLKPGHV--DALYN----LGGLYMDLGAGETEEAKKALKEALKMTN 336 (660)
Q Consensus 277 ~~~~~~g~~~~A~~~~~~al~~~p~~~--~a~~~----La~~~~~~~~g~~~eA~~~~~~al~l~p 336 (660)
.+|..+++-.+-...|++++.+...-+ ..... -|..+... |++++|-.-|=+|++-..
T Consensus 199 QmYT~qKnNKkLK~lYeqalhiKSAIPHPlImGvIRECGGKMHlre--g~fe~AhTDFFEAFKNYD 262 (440)
T KOG1464|consen 199 QMYTEQKNNKKLKALYEQALHIKSAIPHPLIMGVIRECGGKMHLRE--GEFEKAHTDFFEAFKNYD 262 (440)
T ss_pred hhhhhhcccHHHHHHHHHHHHhhccCCchHHHhHHHHcCCcccccc--chHHHHHhHHHHHHhccc
Confidence 888899999888899999988754332 22221 22334444 899999988888887643
No 313
>PF14561 TPR_20: Tetratricopeptide repeat; PDB: 3QOU_A 2R5S_A 3QDN_B.
Probab=95.01 E-value=0.24 Score=40.66 Aligned_cols=62 Identities=31% Similarity=0.325 Sum_probs=33.3
Q ss_pred HHHHHHHHHhCCCCHHHHHHHHHHHHhCCChHHHHHHHHHHHHhCCCC--HHHHHHHHHHHHHh
Q 006120 255 VKALEEAIFIKPDYADAHCDLASALHAMGEDERAIEVFQKAIDLKPGH--VDALYNLGGLYMDL 316 (660)
Q Consensus 255 ~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~--~~a~~~La~~~~~~ 316 (660)
+..+++.++.+|++..+.+.+|..+...|++++|++.+-.+++.+++. ..+...+-.++..+
T Consensus 8 ~~al~~~~a~~P~D~~ar~~lA~~~~~~g~~e~Al~~Ll~~v~~dr~~~~~~ar~~ll~~f~~l 71 (90)
T PF14561_consen 8 IAALEAALAANPDDLDARYALADALLAAGDYEEALDQLLELVRRDRDYEDDAARKRLLDIFELL 71 (90)
T ss_dssp HHHHHHHHHHSTT-HHHHHHHHHHHHHTT-HHHHHHHHHHHHCC-TTCCCCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHcCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCccccccHHHHHHHHHHHHc
Confidence 445555566666666666666666666666666666666666655443 33444444444444
No 314
>PF04781 DUF627: Protein of unknown function (DUF627); InterPro: IPR006866 This domain represents the N-terminal region of several plant proteins of unknown function.
Probab=95.01 E-value=0.21 Score=42.17 Aligned_cols=47 Identities=26% Similarity=0.437 Sum_probs=34.4
Q ss_pred HHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHccc
Q 006120 287 RAIEVFQKAIDLKPGHVDALYNLGGLYMDLGAGETEEAKKALKEALKMT 335 (660)
Q Consensus 287 ~A~~~~~~al~~~p~~~~a~~~La~~~~~~~~g~~~eA~~~~~~al~l~ 335 (660)
.+++++.++..+.|..+..++.+|.-+... ..|+++..-.+++|.+.
T Consensus 62 ~sve~~s~a~~Lsp~~A~~L~~la~~l~s~--~~Ykk~v~kak~~Lsv~ 108 (111)
T PF04781_consen 62 GSVECFSRAVELSPDSAHSLFELASQLGSV--KYYKKAVKKAKRGLSVT 108 (111)
T ss_pred HhHHHHHHHhccChhHHHHHHHHHHHhhhH--HHHHHHHHHHHHHhccc
Confidence 467778888888888877777777766655 56777777777777654
No 315
>PF09986 DUF2225: Uncharacterized protein conserved in bacteria (DUF2225); InterPro: IPR018708 This conserved bacterial family has no known function.
Probab=94.96 E-value=0.51 Score=45.64 Aligned_cols=93 Identities=20% Similarity=0.137 Sum_probs=53.0
Q ss_pred cCCHHHHHHHHHHHHHHhccCCCchhchHHHHHHHHHHHHHHCCCHHHHHHHHHHH-------HHhCC------CcHHHH
Q 006120 172 LGRYREAKEEYLLALEAAETGGNQWAYLLPQIYVNLGIALEGEGMVLSACEYYRES-------AILCP------THFRAL 238 (660)
Q Consensus 172 ~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a-------l~~~p------~~~~~~ 238 (660)
...+++|++.|.-|+-...-...... ..+.++..+|.+|..+|+.+....++++| ++... +...+.
T Consensus 90 ~Rt~~~ai~~YkLAll~~~~~~~~~s-~~A~l~LrlAWlyR~~~~~~~E~~fl~~Al~~y~~a~~~e~~~~~~~~~~~l~ 168 (214)
T PF09986_consen 90 ERTLEEAIESYKLALLCAQIKKEKPS-KKAGLCLRLAWLYRDLGDEENEKRFLRKALEFYEEAYENEDFPIEGMDEATLL 168 (214)
T ss_pred CCCHHHHHHHHHHHHHHHHHhCCCHH-HHHHHHHHHHHHhhccCCHHHHHHHHHHHHHHHHHHHHhCcCCCCCchHHHHH
Confidence 34566666666666644322211111 16788888899998888855544444444 33221 113455
Q ss_pred HHHHHHHHHCCCHHHHHHHHHHHHHhC
Q 006120 239 KLLGSALFGVGEYRAAVKALEEAIFIK 265 (660)
Q Consensus 239 ~~lg~~~~~~g~~~~A~~~~~~al~~~ 265 (660)
+.+|.+..+.|++++|...|.+++...
T Consensus 169 YLigeL~rrlg~~~eA~~~fs~vi~~~ 195 (214)
T PF09986_consen 169 YLIGELNRRLGNYDEAKRWFSRVIGSK 195 (214)
T ss_pred HHHHHHHHHhCCHHHHHHHHHHHHcCC
Confidence 666666666666666666666666553
No 316
>PRK10941 hypothetical protein; Provisional
Probab=94.94 E-value=0.3 Score=48.96 Aligned_cols=79 Identities=14% Similarity=-0.015 Sum_probs=71.9
Q ss_pred HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHH
Q 006120 200 LPQIYVNLGIALEGEGMVLSACEYYRESAILCPTHFRALKLLGSALFGVGEYRAAVKALEEAIFIKPDYADAHCDLASA 278 (660)
Q Consensus 200 ~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~ 278 (660)
......++-.++.+.++++.|+.+.+..+.+.|+++.-+...|.+|.+.|.+..|...++..++..|+++.+-.-...+
T Consensus 180 l~Rml~nLK~~~~~~~~~~~AL~~~e~ll~l~P~dp~e~RDRGll~~qL~c~~~A~~DL~~fl~~~P~dp~a~~ik~ql 258 (269)
T PRK10941 180 IRKLLDTLKAALMEEKQMELALRASEALLQFDPEDPYEIRDRGLIYAQLDCEHVALSDLSYFVEQCPEDPISEMIRAQI 258 (269)
T ss_pred HHHHHHHHHHHHHHcCcHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCcHHHHHHHHHHHHhCCCchhHHHHHHHH
Confidence 5677888889999999999999999999999999999999999999999999999999999999999998776544443
No 317
>KOG1839 consensus Uncharacterized protein CLU1/cluA/TIF31 involved in mitochondrial morphology/distribution, also found associated with eIF-3 [General function prediction only]
Probab=94.93 E-value=0.23 Score=58.57 Aligned_cols=172 Identities=18% Similarity=0.140 Sum_probs=130.6
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHhccCCCchhchHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh--------CC
Q 006120 161 PHFRAGNCLYVLGRYREAKEEYLLALEAAETGGNQWAYLLPQIYVNLGIALEGEGMVLSACEYYRESAIL--------CP 232 (660)
Q Consensus 161 ~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~--------~p 232 (660)
-....|......|.+.+|.+ ..+++.+..+.....+...+..+..++.++...|++++|+..-+++.-+ .|
T Consensus 934 ~~~e~gq~~~~e~~~~~~~~-~~~slnl~~~v~~~~h~~~~~~~~~La~l~~~~~d~~~Ai~~~~ka~ii~eR~~g~ds~ 1012 (1236)
T KOG1839|consen 934 DSPEQGQEALLEDGFSEAYE-LPESLNLLNNVMGVLHPEVASKYRSLAKLSNRLGDNQEAIAQQRKACIISERVLGKDSP 1012 (1236)
T ss_pred hhhhhhhhhhcccchhhhhh-hhhhhhHHHHhhhhcchhHHHHHHHHHHHHhhhcchHHHHHhcccceeeechhccCCCH
Confidence 34556777777888888888 6565555443222222227889999999999999999999998888643 34
Q ss_pred CcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh--------CCCCHHHHHHHHHHHHhCCChHHHHHHHHHHHHhCC----
Q 006120 233 THFRALKLLGSALFGVGEYRAAVKALEEAIFI--------KPDYADAHCDLASALHAMGEDERAIEVFQKAIDLKP---- 300 (660)
Q Consensus 233 ~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~--------~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p---- 300 (660)
+....+.+++...+..++...|+..+.++..+ .|.-.....+++.++...++++.|+.+.+.|++.+.
T Consensus 1013 ~t~~~y~nlal~~f~~~~~~~al~~~~ra~~l~~Ls~ge~hP~~a~~~~nle~l~~~v~e~d~al~~le~A~a~~~~v~g 1092 (1236)
T KOG1839|consen 1013 NTKLAYGNLALYEFAVKNLSGALKSLNRALKLKLLSSGEDHPPTALSFINLELLLLGVEEADTALRYLESALAKNKKVLG 1092 (1236)
T ss_pred HHHHHhhHHHHHHHhccCccchhhhHHHHHHhhccccCCCCCchhhhhhHHHHHHhhHHHHHHHHHHHHHHHHHHhhhcC
Confidence 55778899999999999999999999998876 355567778999999999999999999999998642
Q ss_pred -C---CHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHccc
Q 006120 301 -G---HVDALYNLGGLYMDLGAGETEEAKKALKEALKMT 335 (660)
Q Consensus 301 -~---~~~a~~~La~~~~~~~~g~~~eA~~~~~~al~l~ 335 (660)
. ....+..++.+...+ +++..|....+....+.
T Consensus 1093 ~~~l~~~~~~~~~a~l~~s~--~dfr~al~~ek~t~~iy 1129 (1236)
T KOG1839|consen 1093 PKELETALSYHALARLFESM--KDFRNALEHEKVTYGIY 1129 (1236)
T ss_pred ccchhhhhHHHHHHHHHhhh--HHHHHHHHHHhhHHHHH
Confidence 1 244666777777776 78887777777666553
No 318
>COG5159 RPN6 26S proteasome regulatory complex component [Posttranslational modification, protein turnover, chaperones]
Probab=94.85 E-value=4.5 Score=40.02 Aligned_cols=172 Identities=15% Similarity=0.129 Sum_probs=110.6
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHhccCCCchhchHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh-----CCCcHH
Q 006120 162 HFRAGNCLYVLGRYREAKEEYLLALEAAETGGNQWAYLLPQIYVNLGIALEGEGMVLSACEYYRESAIL-----CPTHFR 236 (660)
Q Consensus 162 ~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~-----~p~~~~ 236 (660)
-..+..++++.|+|.+|+......+.-.....+... ...++..-..+|....+..++...+..|-.. .|....
T Consensus 128 e~Kli~l~y~~~~YsdalalIn~ll~ElKk~DDK~~--Li~vhllESKvyh~irnv~KskaSLTaArt~Ans~YCPpqlq 205 (421)
T COG5159 128 ECKLIYLLYKTGKYSDALALINPLLHELKKYDDKIN--LITVHLLESKVYHEIRNVSKSKASLTAARTLANSAYCPPQLQ 205 (421)
T ss_pred HHHHHHHHHhcccHHHHHHHHHHHHHHHHhhcCccc--eeehhhhhHHHHHHHHhhhhhhhHHHHHHHHhhccCCCHHHH
Confidence 345678899999999999998888765444333322 5667777888888888888888877766543 343333
Q ss_pred HH--HHHHHHHHHCCCHHHHHHHHHHHHHhC---CCCHHHHH-----HHHHHHHhCCChHHHHHHH--HHHHH-hCCCCH
Q 006120 237 AL--KLLGSALFGVGEYRAAVKALEEAIFIK---PDYADAHC-----DLASALHAMGEDERAIEVF--QKAID-LKPGHV 303 (660)
Q Consensus 237 ~~--~~lg~~~~~~g~~~~A~~~~~~al~~~---p~~~~~~~-----~la~~~~~~g~~~~A~~~~--~~al~-~~p~~~ 303 (660)
+- ..-|.......+|.-|-.+|-++++-. ..+..+.. .|..+. .+..++-...+ +.+++ .+....
T Consensus 206 a~lDL~sGIlhcdd~dyktA~SYF~Ea~Egft~l~~d~kAc~sLkYmlLSkIM--lN~~~evk~vl~~K~t~~~y~~r~I 283 (421)
T COG5159 206 AQLDLLSGILHCDDRDYKTASSYFIEALEGFTLLKMDVKACVSLKYMLLSKIM--LNRREEVKAVLRNKNTLKHYDDRMI 283 (421)
T ss_pred HHHHHhccceeeccccchhHHHHHHHHHhccccccchHHHHHHHHHHHHHHHH--HhhHHHHHHHHccchhHhhhhhhhH
Confidence 22 233666677789999999999998753 23344433 233333 33344333333 33444 344556
Q ss_pred HHHHHHHHHHHHhcCCCHHHHHHHHHHHHcccCC
Q 006120 304 DALYNLGGLYMDLGAGETEEAKKALKEALKMTNR 337 (660)
Q Consensus 304 ~a~~~La~~~~~~~~g~~~eA~~~~~~al~l~p~ 337 (660)
++....+.++......++..|+..|+.-+..+|-
T Consensus 284 ~am~avaea~~NRsL~df~~aL~qY~~el~~D~~ 317 (421)
T COG5159 284 RAMLAVAEAFGNRSLKDFSDALAQYSDELHQDSF 317 (421)
T ss_pred HHHHHHHHHhCCCcHhhHHHHHHHhhHHhccCHH
Confidence 7788888877644346788888888877766543
No 319
>COG3914 Spy Predicted O-linked N-acetylglucosamine transferase, SPINDLY family [Posttranslational modification, protein turnover, chaperones]
Probab=94.71 E-value=1 Score=48.80 Aligned_cols=101 Identities=25% Similarity=0.192 Sum_probs=43.6
Q ss_pred HHHHHHCCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHCCCHHHHHHHHHH-HHHhCCCCHHHHHHH------HHHHH
Q 006120 208 GIALEGEGMVLSACEYYRESAILCPTHFRALKLLGSALFGVGEYRAAVKALEE-AIFIKPDYADAHCDL------ASALH 280 (660)
Q Consensus 208 a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~-al~~~p~~~~~~~~l------a~~~~ 280 (660)
...+...+....+......++..+|++..+..+|+......|....+...+.+ +....|++......+ +..+.
T Consensus 74 si~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~L~~ale~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~ 153 (620)
T COG3914 74 SILLAPLADSTLAFLAKRIPLSVNPENCPAVQNLAAALELDGLQFLALADISEIAEWLSPDNAEFLGHLIRFYQLGRYLK 153 (620)
T ss_pred HhhccccccchhHHHHHhhhHhcCcccchHHHHHHHHHHHhhhHHHHHHHHHHHHHhcCcchHHHHhhHHHHHHHHHHHH
Confidence 33334444444444444444444444444444444444444333333332222 444444443332222 44444
Q ss_pred hCCChHHHHHHHHHHHHhCCCCHHHHHH
Q 006120 281 AMGEDERAIEVFQKAIDLKPGHVDALYN 308 (660)
Q Consensus 281 ~~g~~~~A~~~~~~al~~~p~~~~a~~~ 308 (660)
.+|+..++....+++..+.|.++.+...
T Consensus 154 ~l~~~~~~~~~l~~~~d~~p~~~~~~~~ 181 (620)
T COG3914 154 LLGRTAEAELALERAVDLLPKYPRVLGA 181 (620)
T ss_pred HhccHHHHHHHHHHHHHhhhhhhhhHhH
Confidence 4444444444444444444444443333
No 320
>PF14853 Fis1_TPR_C: Fis1 C-terminal tetratricopeptide repeat; PDB: 1IYG_A 1PC2_A 1NZN_A 3UUX_C 1Y8M_A 2PQR_A 2PQN_A 3O48_A.
Probab=94.68 E-value=0.17 Score=36.73 Aligned_cols=42 Identities=12% Similarity=0.060 Sum_probs=31.8
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHH
Q 006120 126 DGHMAIGRVLYEHQLFKEALVSFKRACELQPTDVRPHFRAGN 167 (660)
Q Consensus 126 ~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~ 167 (660)
+.++.+|..+++.|+|++|..+.+.+++..|++..+......
T Consensus 2 d~lY~lAig~ykl~~Y~~A~~~~~~lL~~eP~N~Qa~~L~~~ 43 (53)
T PF14853_consen 2 DCLYYLAIGHYKLGEYEKARRYCDALLEIEPDNRQAQSLKEL 43 (53)
T ss_dssp HHHHHHHHHHHHTT-HHHHHHHHHHHHHHTTS-HHHHHHHHH
T ss_pred hhHHHHHHHHHHhhhHHHHHHHHHHHHhhCCCcHHHHHHHHH
Confidence 456788888889999999999999999999888776655443
No 321
>COG4649 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=94.68 E-value=3.1 Score=38.10 Aligned_cols=122 Identities=16% Similarity=0.060 Sum_probs=52.2
Q ss_pred cCCHHHHHHHHHHHHHhCCCC--HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhccCCCchhchHHHHHHHHHHHHHHCC
Q 006120 138 HQLFKEALVSFKRACELQPTD--VRPHFRAGNCLYVLGRYREAKEEYLLALEAAETGGNQWAYLLPQIYVNLGIALEGEG 215 (660)
Q Consensus 138 ~g~~~~A~~~~~~al~~~p~~--~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~la~~~~~~g 215 (660)
.+..++|+..|...-+..-.. .-+....|.+..+.|+...|+..|..+-.-.+.+... .-.+...-+.++...|
T Consensus 71 ~~k~d~Alaaf~~lektg~g~YpvLA~mr~at~~a~kgdta~AV~aFdeia~dt~~P~~~----rd~ARlraa~lLvD~g 146 (221)
T COG4649 71 ENKTDDALAAFTDLEKTGYGSYPVLARMRAATLLAQKGDTAAAVAAFDEIAADTSIPQIG----RDLARLRAAYLLVDNG 146 (221)
T ss_pred cCCchHHHHHHHHHHhcCCCcchHHHHHHHHHHHhhcccHHHHHHHHHHHhccCCCcchh----hHHHHHHHHHHHhccc
Confidence 344455555554443332211 2334444555555555555555555544433321111 1223334444445555
Q ss_pred CHHHHHHHHHHHH-HhCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Q 006120 216 MVLSACEYYRESA-ILCPTHFRALKLLGSALFGVGEYRAAVKALEEAIF 263 (660)
Q Consensus 216 ~~~~A~~~~~~al-~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~ 263 (660)
.|+.-....+..- .-+|-...+.-.||..-++.|++..|...|.+...
T Consensus 147 sy~dV~srvepLa~d~n~mR~sArEALglAa~kagd~a~A~~~F~qia~ 195 (221)
T COG4649 147 SYDDVSSRVEPLAGDGNPMRHSAREALGLAAYKAGDFAKAKSWFVQIAN 195 (221)
T ss_pred cHHHHHHHhhhccCCCChhHHHHHHHHhHHHHhccchHHHHHHHHHHHc
Confidence 5554443333211 11222233444455555555555555555554443
No 322
>KOG1463 consensus 26S proteasome regulatory complex, subunit RPN6/PSMD11 [Posttranslational modification, protein turnover, chaperones]
Probab=94.68 E-value=5.7 Score=40.36 Aligned_cols=173 Identities=14% Similarity=0.014 Sum_probs=117.5
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHHhccCCCchhchHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-----CCcH--
Q 006120 163 FRAGNCLYVLGRYREAKEEYLLALEAAETGGNQWAYLLPQIYVNLGIALEGEGMVLSACEYYRESAILC-----PTHF-- 235 (660)
Q Consensus 163 ~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~-----p~~~-- 235 (660)
..+..+|...++|.+|+......+.--....+... ..+++..-..+|....+..+|...+..|-... |...
T Consensus 132 arli~Ly~d~~~YteAlaL~~~L~rElKKlDDK~l--Lvev~llESK~y~~l~Nl~KakasLTsART~AnaiYcpPqlQa 209 (411)
T KOG1463|consen 132 ARLIRLYNDTKRYTEALALINDLLRELKKLDDKIL--LVEVHLLESKAYHALRNLPKAKASLTSARTTANAIYCPPQLQA 209 (411)
T ss_pred HHHHHHHHhhHHHHHHHHHHHHHHHHHHhcccccc--eeeehhhhhHHHHHHhcchhHHHHHHHHHHhhcccccCHHHHH
Confidence 45677888999999999988888765444333322 56677777888888888888888887765431 2222
Q ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHHhCC---CCHHHHH---HHHHHHHhCCChHHH--HHHHHHHHHhCCCCHHHHH
Q 006120 236 RALKLLGSALFGVGEYRAAVKALEEAIFIKP---DYADAHC---DLASALHAMGEDERA--IEVFQKAIDLKPGHVDALY 307 (660)
Q Consensus 236 ~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p---~~~~~~~---~la~~~~~~g~~~~A--~~~~~~al~~~p~~~~a~~ 307 (660)
..-..-|.++....+|.-|..+|-+|++-.. ++..+.. .+-.+-...+..++- +-.-+.+++......++..
T Consensus 210 ~lDLqSGIlha~ekDykTafSYFyEAfEgf~s~~~~v~A~~sLKYMlLcKIMln~~ddv~~lls~K~~l~y~g~~i~Amk 289 (411)
T KOG1463|consen 210 TLDLQSGILHAAEKDYKTAFSYFYEAFEGFDSLDDDVKALTSLKYMLLCKIMLNLPDDVAALLSAKLALKYAGRDIDAMK 289 (411)
T ss_pred HHHHhccceeecccccchHHHHHHHHHccccccCCcHHHHHHHHHHHHHHHHhcCHHHHHHHHhhHHHHhccCcchHHHH
Confidence 2223336666677899999999999987531 2233332 223333445555554 4444567777777788999
Q ss_pred HHHHHHHHhcCCCHHHHHHHHHHHHcccCC
Q 006120 308 NLGGLYMDLGAGETEEAKKALKEALKMTNR 337 (660)
Q Consensus 308 ~La~~~~~~~~g~~~eA~~~~~~al~l~p~ 337 (660)
..+.++.+....+++.|+.-|+.-+..+|-
T Consensus 290 avAeA~~nRSLkdF~~AL~~yk~eL~~D~i 319 (411)
T KOG1463|consen 290 AVAEAFGNRSLKDFEKALADYKKELAEDPI 319 (411)
T ss_pred HHHHHhcCCcHHHHHHHHHHhHHHHhcChH
Confidence 999998765457899999999988887765
No 323
>PF14561 TPR_20: Tetratricopeptide repeat; PDB: 3QOU_A 2R5S_A 3QDN_B.
Probab=94.66 E-value=0.37 Score=39.48 Aligned_cols=75 Identities=20% Similarity=0.321 Sum_probs=55.1
Q ss_pred HHHHHHHHHHhCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCC--HHHHHHHHHHHHhCCChHHHHHHHHH
Q 006120 220 ACEYYRESAILCPTHFRALKLLGSALFGVGEYRAAVKALEEAIFIKPDY--ADAHCDLASALHAMGEDERAIEVFQK 294 (660)
Q Consensus 220 A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~--~~~~~~la~~~~~~g~~~~A~~~~~~ 294 (660)
.+..+++.++.+|++..+.+.+|..+...|++++|++.+-.++..+++. ..+...+-.++..+|.-+.-...+++
T Consensus 7 ~~~al~~~~a~~P~D~~ar~~lA~~~~~~g~~e~Al~~Ll~~v~~dr~~~~~~ar~~ll~~f~~lg~~~plv~~~RR 83 (90)
T PF14561_consen 7 DIAALEAALAANPDDLDARYALADALLAAGDYEEALDQLLELVRRDRDYEDDAARKRLLDIFELLGPGDPLVSEYRR 83 (90)
T ss_dssp HHHHHHHHHHHSTT-HHHHHHHHHHHHHTT-HHHHHHHHHHHHCC-TTCCCCHHHHHHHHHHHHH-TT-HHHHHHHH
T ss_pred cHHHHHHHHHcCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCccccccHHHHHHHHHHHHcCCCChHHHHHHH
Confidence 4567888999999999999999999999999999999999999998765 55556666666666665444444433
No 324
>PF09986 DUF2225: Uncharacterized protein conserved in bacteria (DUF2225); InterPro: IPR018708 This conserved bacterial family has no known function.
Probab=94.64 E-value=0.53 Score=45.55 Aligned_cols=104 Identities=16% Similarity=0.038 Sum_probs=68.3
Q ss_pred cCCHHHHHHHHHHHHHhC-----C--CCHHHHHHHHHHHHHcCCHHHHHHH-------HHHHHHHhccCCCchhchHHHH
Q 006120 138 HQLFKEALVSFKRACELQ-----P--TDVRPHFRAGNCLYVLGRYREAKEE-------YLLALEAAETGGNQWAYLLPQI 203 (660)
Q Consensus 138 ~g~~~~A~~~~~~al~~~-----p--~~~~~~~~la~~~~~~g~~~~A~~~-------~~~al~~~p~~~~~~~~~~~~~ 203 (660)
...+++|++.|.-|+-.. + ..+..+..+|.+|...|+.+....+ |.++++.......... ...+
T Consensus 90 ~Rt~~~ai~~YkLAll~~~~~~~~~s~~A~l~LrlAWlyR~~~~~~~E~~fl~~Al~~y~~a~~~e~~~~~~~~--~~~l 167 (214)
T PF09986_consen 90 ERTLEEAIESYKLALLCAQIKKEKPSKKAGLCLRLAWLYRDLGDEENEKRFLRKALEFYEEAYENEDFPIEGMD--EATL 167 (214)
T ss_pred CCCHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHhhccCCHHHHHHHHHHHHHHHHHHHHhCcCCCCCch--HHHH
Confidence 456677777777666431 1 1256778889999999885554444 4444444333222222 5678
Q ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHhCCCcH-HHHHHHHH
Q 006120 204 YVNLGIALEGEGMVLSACEYYRESAILCPTHF-RALKLLGS 243 (660)
Q Consensus 204 ~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~-~~~~~lg~ 243 (660)
.+.+|.+..+.|++++|..+|.+++....... ..+..+|.
T Consensus 168 ~YLigeL~rrlg~~~eA~~~fs~vi~~~~~s~~~~l~~~AR 208 (214)
T PF09986_consen 168 LYLIGELNRRLGNYDEAKRWFSRVIGSKKASKEPKLKDMAR 208 (214)
T ss_pred HHHHHHHHHHhCCHHHHHHHHHHHHcCCCCCCcHHHHHHHH
Confidence 89999999999999999999999988643332 34444443
No 325
>KOG4301 consensus Beta-dystrobrevin [Cytoskeleton]
Probab=94.57 E-value=0.057 Score=53.59 Aligned_cols=183 Identities=23% Similarity=0.352 Sum_probs=108.0
Q ss_pred HHHHHHHHHHhhhhccCCCcccccchhhhhhhcccCCCCHHHHHHhhhhhhcccccCCCCccchhccHHHHHHHhH-HHh
Q 006120 456 QGAVKAINERILSVLDETGSARVDLGMFYAILAPICSGSPEKRKRVAFDALLWRPVNEGSTQVRKVDAVRYIKLLR-AVY 534 (660)
Q Consensus 456 ~H~v~~l~~~~l~~hDr~g~~~fev~~y~~~~~~~~~~~~~~r~r~~~d~~~~~~~~~~~a~~i~~D~~~~l~dL~-~~~ 534 (660)
+|.++.++.-.|...|.+|+|+-.|+.--.+++-.+++.+-.++|-.|. ...+.++.-..+.+.+-+-=+..|- +||
T Consensus 105 e~sislllaflLaA~ds~~~g~~~vfavkialatlc~gk~~dklryIfs--~isds~gim~~i~~~~fl~evlslpT~v~ 182 (434)
T KOG4301|consen 105 EQSISLLLAFLLAAEDSEGQGKQQVFAVKIALATLCGGKIKDKLRYIFS--LISDSRGIMQEIQRDQFLHEVLSLPTAVF 182 (434)
T ss_pred HHHHHHHHHHHHhhcCccCCCCceeecchhhhhhhccchHHHHHHHHHH--HHccchHHHHHHHHHHHHHHHHcCCchhh
Confidence 6889999999999999999888887776667777888877777777776 2233333223333332221111111 222
Q ss_pred -ccCCCchhhhhhhccCCCcccchhHHhh-hccCCCCcchhhhhhhhcccCccccCCCcccccccc-cccccccccc-cc
Q 006120 535 -IPSHGVSEMMEVHGEADSSMVSLSEFLV-MFDDPDWGFGIMSTLMKLEAGDRNRHGRHVCSVCRY-PIIGSRFKEM-KS 610 (660)
Q Consensus 535 -~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~-~~ 610 (660)
+++-|-.++.-=-|=...--++...|+. +.+||-=...+...|+++=+.--+=--...|+.|+- ||.|.|++=- -+
T Consensus 183 e~psfg~te~~a~~cf~qqrKv~Ln~fldtl~sdp~p~cl~wlpLmhrla~v~nv~hpv~cs~c~srs~~gfry~cq~C~ 262 (434)
T KOG4301|consen 183 EGPSFGYTELSARLCFLQQRKVELNQFLDTLMSDPPPQCLVWLPLMHRLATVENVFHPVECSYCRSRSMMGFRYRCQQCH 262 (434)
T ss_pred cCCCcchHHHHHHHHHHHHHHHHHHHHHHHHhcCCCchhHHHHHHHHHHHhhcccCCCccCcceecccccchhhhHhhcC
Confidence 2333332211111111222345667887 556655444445555555444444444678999874 7999999854 47
Q ss_pred ccccccccccCCCCCCCCccccchhhccCCh
Q 006120 611 HFSLCSQCYSEGKVPPTFKQDEYKFKEYGSE 641 (660)
Q Consensus 611 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 641 (660)
+.-||.+|.=.|.---.- -.+--||||.|-
T Consensus 263 nyqlcq~cfwrG~~g~~h-snqh~mke~Ss~ 292 (434)
T KOG4301|consen 263 NYQLCQQCFWRGHAGGSH-SNQHQMKEYSSW 292 (434)
T ss_pred CccccchhhccccCCCCc-chHHHHHHhhcc
Confidence 889999999887654211 123357888764
No 326
>PF14853 Fis1_TPR_C: Fis1 C-terminal tetratricopeptide repeat; PDB: 1IYG_A 1PC2_A 1NZN_A 3UUX_C 1Y8M_A 2PQR_A 2PQN_A 3O48_A.
Probab=94.57 E-value=0.22 Score=36.19 Aligned_cols=35 Identities=23% Similarity=0.266 Sum_probs=16.1
Q ss_pred HHHHHHHHHhCCChHHHHHHHHHHHHhCCCCHHHH
Q 006120 272 HCDLASALHAMGEDERAIEVFQKAIDLKPGHVDAL 306 (660)
Q Consensus 272 ~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~a~ 306 (660)
++.+|..+.++|+|++|..+.+.++++.|++..+.
T Consensus 4 lY~lAig~ykl~~Y~~A~~~~~~lL~~eP~N~Qa~ 38 (53)
T PF14853_consen 4 LYYLAIGHYKLGEYEKARRYCDALLEIEPDNRQAQ 38 (53)
T ss_dssp HHHHHHHHHHTT-HHHHHHHHHHHHHHTTS-HHHH
T ss_pred HHHHHHHHHHhhhHHHHHHHHHHHHhhCCCcHHHH
Confidence 34444444555555555555555555555544433
No 327
>KOG2396 consensus HAT (Half-A-TPR) repeat-containing protein [General function prediction only]
Probab=94.55 E-value=0.45 Score=50.45 Aligned_cols=90 Identities=12% Similarity=0.051 Sum_probs=71.6
Q ss_pred HHHHHHHHHHHhCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhCCC-hHHHHHHHHHHHH
Q 006120 219 SACEYYRESAILCPTHFRALKLLGSALFGVGEYRAAVKALEEAIFIKPDYADAHCDLASALHAMGE-DERAIEVFQKAID 297 (660)
Q Consensus 219 ~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~-~~~A~~~~~~al~ 297 (660)
.-...|+.|+...+.+...|.+......+.+.+.+--..|.+++..+|+++..|..-|.-....+. .+.|...+.++++
T Consensus 89 rIv~lyr~at~rf~~D~~lW~~yi~f~kk~~~~~~v~ki~~~~l~~Hp~~~dLWI~aA~wefe~n~ni~saRalflrgLR 168 (568)
T KOG2396|consen 89 RIVFLYRRATNRFNGDVKLWLSYIAFCKKKKTYGEVKKIFAAMLAKHPNNPDLWIYAAKWEFEINLNIESARALFLRGLR 168 (568)
T ss_pred HHHHHHHHHHHhcCCCHHHHHHHHHHHHHhcchhHHHHHHHHHHHhCCCCchhHHhhhhhHHhhccchHHHHHHHHHHhh
Confidence 445677788888888888888888877777878888888888888888888888888876666555 7888888888888
Q ss_pred hCCCCHHHHHH
Q 006120 298 LKPGHVDALYN 308 (660)
Q Consensus 298 ~~p~~~~a~~~ 308 (660)
.+|+.+..|..
T Consensus 169 ~npdsp~Lw~e 179 (568)
T KOG2396|consen 169 FNPDSPKLWKE 179 (568)
T ss_pred cCCCChHHHHH
Confidence 88888776543
No 328
>KOG4814 consensus Uncharacterized conserved protein [Function unknown]
Probab=94.46 E-value=1.6 Score=47.66 Aligned_cols=102 Identities=14% Similarity=0.110 Sum_probs=87.2
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHhccCCCchhchHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCcHHHHHH
Q 006120 161 PHFRAGNCLYVLGRYREAKEEYLLALEAAETGGNQWAYLLPQIYVNLGIALEGEGMVLSACEYYRESAILCPTHFRALKL 240 (660)
Q Consensus 161 ~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~ 240 (660)
.+++-|.-.++..+|..+++.|...+...|....... .+....+++.+|..+.+.+.|.+++++|-+.+|.++-....
T Consensus 356 iLWn~A~~~F~~~~Y~~s~~~y~~Sl~~i~~D~~~~~--FaK~qR~l~~CYL~L~QLD~A~E~~~EAE~~d~~~~l~q~~ 433 (872)
T KOG4814|consen 356 LLWNTAKKLFKMEKYVVSIRFYKLSLKDIISDNYSDR--FAKIQRALQVCYLKLEQLDNAVEVYQEAEEVDRQSPLCQLL 433 (872)
T ss_pred HHHHhhHHHHHHHHHHHHHHHHHHHHHhccchhhhhH--HHHHHHHHHHHHhhHHHHHHHHHHHHHHHhhccccHHHHHH
Confidence 4556677788899999999999999998887654443 68888999999999999999999999999999999888888
Q ss_pred HHHHHHHCCCHHHHHHHHHHHHHh
Q 006120 241 LGSALFGVGEYRAAVKALEEAIFI 264 (660)
Q Consensus 241 lg~~~~~~g~~~~A~~~~~~al~~ 264 (660)
+-.+....+.-++|+.........
T Consensus 434 ~~~~~~~E~~Se~AL~~~~~~~s~ 457 (872)
T KOG4814|consen 434 MLQSFLAEDKSEEALTCLQKIKSS 457 (872)
T ss_pred HHHHHHHhcchHHHHHHHHHHHhh
Confidence 888888889999999998887665
No 329
>KOG1839 consensus Uncharacterized protein CLU1/cluA/TIF31 involved in mitochondrial morphology/distribution, also found associated with eIF-3 [General function prediction only]
Probab=94.44 E-value=0.39 Score=56.72 Aligned_cols=172 Identities=19% Similarity=0.075 Sum_probs=129.1
Q ss_pred HHHHHHHHHHHcCCHHHHHH------HHHH-HHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhccCCCchhch
Q 006120 127 GHMAIGRVLYEHQLFKEALV------SFKR-ACELQPTDVRPHFRAGNCLYVLGRYREAKEEYLLALEAAETGGNQWAYL 199 (660)
Q Consensus 127 ~~~~lg~~~~~~g~~~~A~~------~~~~-al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~ 199 (660)
-....|......|.+.+|.+ .+.. .-.+.|..+..+..++.++..+|++++|+..-.++.-+...........
T Consensus 934 ~~~e~gq~~~~e~~~~~~~~~~~slnl~~~v~~~~h~~~~~~~~~La~l~~~~~d~~~Ai~~~~ka~ii~eR~~g~ds~~ 1013 (1236)
T KOG1839|consen 934 DSPEQGQEALLEDGFSEAYELPESLNLLNNVMGVLHPEVASKYRSLAKLSNRLGDNQEAIAQQRKACIISERVLGKDSPN 1013 (1236)
T ss_pred hhhhhhhhhhcccchhhhhhhhhhhhHHHHhhhhcchhHHHHHHHHHHHHhhhcchHHHHHhcccceeeechhccCCCHH
Confidence 34566777777888887777 4442 2234677889999999999999999999999988876654332222222
Q ss_pred HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh--------CCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCC-----
Q 006120 200 LPQIYVNLGIALEGEGMVLSACEYYRESAIL--------CPTHFRALKLLGSALFGVGEYRAAVKALEEAIFIKP----- 266 (660)
Q Consensus 200 ~~~~~~~la~~~~~~g~~~~A~~~~~~al~~--------~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p----- 266 (660)
....+.+++......++...|+..+.++..+ .|.-+....+++.++...++++.|+.+++.|+.+..
T Consensus 1014 t~~~y~nlal~~f~~~~~~~al~~~~ra~~l~~Ls~ge~hP~~a~~~~nle~l~~~v~e~d~al~~le~A~a~~~~v~g~ 1093 (1236)
T KOG1839|consen 1014 TKLAYGNLALYEFAVKNLSGALKSLNRALKLKLLSSGEDHPPTALSFINLELLLLGVEEADTALRYLESALAKNKKVLGP 1093 (1236)
T ss_pred HHHHhhHHHHHHHhccCccchhhhHHHHHHhhccccCCCCCchhhhhhHHHHHHhhHHHHHHHHHHHHHHHHHHhhhcCc
Confidence 6778888998888999999999999998765 455566778899999999999999999999998742
Q ss_pred ---CCHHHHHHHHHHHHhCCChHHHHHHHHHHHHh
Q 006120 267 ---DYADAHCDLASALHAMGEDERAIEVFQKAIDL 298 (660)
Q Consensus 267 ---~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~ 298 (660)
.....+..+++++..++++..|....+....+
T Consensus 1094 ~~l~~~~~~~~~a~l~~s~~dfr~al~~ek~t~~i 1128 (1236)
T KOG1839|consen 1094 KELETALSYHALARLFESMKDFRNALEHEKVTYGI 1128 (1236)
T ss_pred cchhhhhHHHHHHHHHhhhHHHHHHHHHHhhHHHH
Confidence 12455666777777777777777666655443
No 330
>cd02343 ZZ_EF Zinc finger, ZZ type. Zinc finger present in proteins with an EF_hand motif. The ZZ motif coordinates two zinc ions and most likely participates in ligand binding or molecular scaffolding.
Probab=94.35 E-value=0.022 Score=39.95 Aligned_cols=40 Identities=20% Similarity=0.518 Sum_probs=33.3
Q ss_pred ccccccccccccccccccc-cccccccccccCCCCCCCCcc
Q 006120 591 HVCSVCRYPIIGSRFKEMK-SHFSLCSQCYSEGKVPPTFKQ 630 (660)
Q Consensus 591 ~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~ 630 (660)
+.|..|.-.+.|-|||=++ .+|.||..|++.|..+..-+.
T Consensus 1 i~CdgC~~~~~~~RykCl~C~d~DlC~~Cf~~g~~~~~H~~ 41 (48)
T cd02343 1 ISCDGCDEIAPWHRYRCLQCTDMDLCKTCFLGGVKPEGHED 41 (48)
T ss_pred CCCCCCCCcCCCceEECCCCCCchhHHHHHhCCccCCCCCC
Confidence 4688998778999999765 579999999999998876554
No 331
>smart00028 TPR Tetratricopeptide repeats. Repeats present in 4 or more copies in proteins. Contain a minimum of 34 amino acids each and self-associate via a "knobs and holes" mechanism.
Probab=94.27 E-value=0.062 Score=33.38 Aligned_cols=29 Identities=31% Similarity=0.637 Sum_probs=12.4
Q ss_pred HHHHHHHHHhCCChHHHHHHHHHHHHhCC
Q 006120 272 HCDLASALHAMGEDERAIEVFQKAIDLKP 300 (660)
Q Consensus 272 ~~~la~~~~~~g~~~~A~~~~~~al~~~p 300 (660)
+..+|.++..++++++|+..+++++++.|
T Consensus 4 ~~~~a~~~~~~~~~~~a~~~~~~~~~~~~ 32 (34)
T smart00028 4 LYNLGNAYLKLGDYDEALEYYEKALELDP 32 (34)
T ss_pred HHHHHHHHHHHhhHHHHHHHHHHHHccCC
Confidence 33444444444444444444444444333
No 332
>PF10602 RPN7: 26S proteasome subunit RPN7; InterPro: IPR019585 This entry represents the regulatory subunit RPN7 (known as the non-ATPase regulatory subunit 6 in higher eukaryotes) of the 26S proteasome. This entry also matches the evolutionarily related subunit 1 of the COP9 signalosome complex (CSN) from Arabidopsis []. The 26S proteasome plays a major role in ATP-dependent degradation of ubiquitinated proteins. Substrate specificity is conferred by the regulatory particle (RP), which can dissociate into stable lid and base subcomplexes. The regulatory subunit RPN7 is one of the lid subunits of the 26S proteasome and has been shown in Saccharomyces cerevisiae (Baker's yeast) to be required for structural integrity []. The COP9 signalosome is a conserved protein complex composed of eight subunits, where Individual subunits of the complex have been linked to various signal transduction pathways leading to gene expression and cell cycle control []. The overall organisation and the amino acid sequences of the COP9 signalosome subunits resemble the lid subcomplex of the 19 S regulatory particle for the 26 S proteasome []. COP9 subunit 1 (CSN1 or GPS1) of the COP9 complex is an essential subunit of the complex with regard to both structural integrity and functionality. The N-terminal region of subunit 1 (CSN1-N) can inhibit c-fos expression from either a transfected template or a chromosomal transgene (fos-lacZ), and may contain the activity domain that confers most of the repression functions of CSN1. The C-terminal region of subunit 1 (CSN1-C) allows integration of the protein into the COP9 signalosome.
Probab=94.01 E-value=1.4 Score=41.29 Aligned_cols=107 Identities=16% Similarity=0.062 Sum_probs=87.6
Q ss_pred CchHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHhhccCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC--CCH-
Q 006120 83 TSAEISEKRVFWEESTHDYAVFVKELGVLRNRADGARSREEAFDGHMAIGRVLYEHQLFKEALVSFKRACELQP--TDV- 159 (660)
Q Consensus 83 ~~~~~~~~~~~l~~~~~~~g~~~~Al~~l~~a~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p--~~~- 159 (660)
...+....+..++..+...|+.++|++.+.++.+........++.++.+..+.+..+++.....+..++-.... .+.
T Consensus 31 ~kesir~~~~~l~~~~~~~Gd~~~A~k~y~~~~~~~~~~~~~id~~l~~irv~i~~~d~~~v~~~i~ka~~~~~~~~d~~ 110 (177)
T PF10602_consen 31 GKESIRMALEDLADHYCKIGDLEEALKAYSRARDYCTSPGHKIDMCLNVIRVAIFFGDWSHVEKYIEKAESLIEKGGDWE 110 (177)
T ss_pred chHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHhhhcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHhccchHH
Confidence 34455677888899999999999999999999998888888899999999999999999999999999877642 222
Q ss_pred ---HHHHHHHHHHHHcCCHHHHHHHHHHHHHHh
Q 006120 160 ---RPHFRAGNCLYVLGRYREAKEEYLLALEAA 189 (660)
Q Consensus 160 ---~~~~~la~~~~~~g~~~~A~~~~~~al~~~ 189 (660)
.....-|..+...++|.+|.+.|-.+..-.
T Consensus 111 ~~nrlk~~~gL~~l~~r~f~~AA~~fl~~~~t~ 143 (177)
T PF10602_consen 111 RRNRLKVYEGLANLAQRDFKEAAELFLDSLSTF 143 (177)
T ss_pred HHHHHHHHHHHHHHHhchHHHHHHHHHccCcCC
Confidence 233445777888999999999987776443
No 333
>KOG4814 consensus Uncharacterized conserved protein [Function unknown]
Probab=93.87 E-value=7.9 Score=42.63 Aligned_cols=97 Identities=15% Similarity=0.132 Sum_probs=80.2
Q ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCC------HHHHHHHHHHHHhCCChHHHHHHHHHHHHhCCCCHHHHHHHH
Q 006120 237 ALKLLGSALFGVGEYRAAVKALEEAIFIKPDY------ADAHCDLASALHAMGEDERAIEVFQKAIDLKPGHVDALYNLG 310 (660)
Q Consensus 237 ~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~------~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~La 310 (660)
.+.+-|.-.++..+|..+++.|...+...|.+ +....+++.||..+.+.+.|.+++++|-+.+|.++-....+-
T Consensus 356 iLWn~A~~~F~~~~Y~~s~~~y~~Sl~~i~~D~~~~~FaK~qR~l~~CYL~L~QLD~A~E~~~EAE~~d~~~~l~q~~~~ 435 (872)
T KOG4814|consen 356 LLWNTAKKLFKMEKYVVSIRFYKLSLKDIISDNYSDRFAKIQRALQVCYLKLEQLDNAVEVYQEAEEVDRQSPLCQLLML 435 (872)
T ss_pred HHHHhhHHHHHHHHHHHHHHHHHHHHHhccchhhhhHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHhhccccHHHHHHHH
Confidence 45666778888999999999999998887655 556778999999999999999999999999999887777777
Q ss_pred HHHHHhcCCCHHHHHHHHHHHHccc
Q 006120 311 GLYMDLGAGETEEAKKALKEALKMT 335 (660)
Q Consensus 311 ~~~~~~~~g~~~eA~~~~~~al~l~ 335 (660)
.+.... |+-++|+....+.....
T Consensus 436 ~~~~~E--~~Se~AL~~~~~~~s~~ 458 (872)
T KOG4814|consen 436 QSFLAE--DKSEEALTCLQKIKSSE 458 (872)
T ss_pred HHHHHh--cchHHHHHHHHHHHhhh
Confidence 776666 88899998888776553
No 334
>smart00028 TPR Tetratricopeptide repeats. Repeats present in 4 or more copies in proteins. Contain a minimum of 34 amino acids each and self-associate via a "knobs and holes" mechanism.
Probab=93.70 E-value=0.099 Score=32.37 Aligned_cols=29 Identities=34% Similarity=0.604 Sum_probs=14.5
Q ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHhCC
Q 006120 238 LKLLGSALFGVGEYRAAVKALEEAIFIKP 266 (660)
Q Consensus 238 ~~~lg~~~~~~g~~~~A~~~~~~al~~~p 266 (660)
+..+|.++...|++++|+..+++++++.|
T Consensus 4 ~~~~a~~~~~~~~~~~a~~~~~~~~~~~~ 32 (34)
T smart00028 4 LYNLGNAYLKLGDYDEALEYYEKALELDP 32 (34)
T ss_pred HHHHHHHHHHHhhHHHHHHHHHHHHccCC
Confidence 44445555555555555555555554444
No 335
>COG4649 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=93.67 E-value=5.7 Score=36.51 Aligned_cols=139 Identities=14% Similarity=0.011 Sum_probs=83.9
Q ss_pred HHcCCHHHHHHHHHHHHHHhccCCCchhchHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCC--cH--HHHHHHHHHH
Q 006120 170 YVLGRYREAKEEYLLALEAAETGGNQWAYLLPQIYVNLGIALEGEGMVLSACEYYRESAILCPT--HF--RALKLLGSAL 245 (660)
Q Consensus 170 ~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~--~~--~~~~~lg~~~ 245 (660)
...++.++|+..|...-+-.-..- -..+....+.+..+.|+...|+.+|.++-...|- -. .+...-+.++
T Consensus 69 A~~~k~d~Alaaf~~lektg~g~Y------pvLA~mr~at~~a~kgdta~AV~aFdeia~dt~~P~~~rd~ARlraa~lL 142 (221)
T COG4649 69 AQENKTDDALAAFTDLEKTGYGSY------PVLARMRAATLLAQKGDTAAAVAAFDEIAADTSIPQIGRDLARLRAAYLL 142 (221)
T ss_pred HHcCCchHHHHHHHHHHhcCCCcc------hHHHHHHHHHHHhhcccHHHHHHHHHHHhccCCCcchhhHHHHHHHHHHH
Confidence 345666777777766554432211 3455667777888888888888888876554322 11 2344445666
Q ss_pred HHCCCHHHHHHHHHHHH-HhCCCCHHHHHHHHHHHHhCCChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH
Q 006120 246 FGVGEYRAAVKALEEAI-FIKPDYADAHCDLASALHAMGEDERAIEVFQKAIDLKPGHVDALYNLGGLYMD 315 (660)
Q Consensus 246 ~~~g~~~~A~~~~~~al-~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~La~~~~~ 315 (660)
...|.|++-....+..- .-+|-...+.-.||..-++.|++.+|...|.+... +...+....+.+.+...
T Consensus 143 vD~gsy~dV~srvepLa~d~n~mR~sArEALglAa~kagd~a~A~~~F~qia~-Da~aprnirqRAq~mld 212 (221)
T COG4649 143 VDNGSYDDVSSRVEPLAGDGNPMRHSAREALGLAAYKAGDFAKAKSWFVQIAN-DAQAPRNIRQRAQIMLD 212 (221)
T ss_pred hccccHHHHHHHhhhccCCCChhHHHHHHHHhHHHHhccchHHHHHHHHHHHc-cccCcHHHHHHHHHHHH
Confidence 77777776655444321 12333455666777777788888888888877655 44445555555555543
No 336
>PRK13184 pknD serine/threonine-protein kinase; Reviewed
Probab=93.66 E-value=5.8 Score=46.86 Aligned_cols=137 Identities=17% Similarity=0.152 Sum_probs=97.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhccCcHHHHHHHHHHHHHHHHc----C---CHHHHHHHHHHHHHhCCCCHHHHHHHHH
Q 006120 95 EESTHDYAVFVKELGVLRNRADGARSREEAFDGHMAIGRVLYEH----Q---LFKEALVSFKRACELQPTDVRPHFRAGN 167 (660)
Q Consensus 95 ~~~~~~~g~~~~Al~~l~~a~~~~~~~~~~~~~~~~lg~~~~~~----g---~~~~A~~~~~~al~~~p~~~~~~~~la~ 167 (660)
..+......|++|+..|++.....|...+-.++.+..|.....+ | .+++|+..|++.- -.|..+--|...|.
T Consensus 482 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~ 560 (932)
T PRK13184 482 PDAFLAEKLYDQALIFYRRIRESFPGRKEGYEAQFRLGITLLEKASEQGDPRDFTQALSEFSYLH-GGVGAPLEYLGKAL 560 (932)
T ss_pred cHHHHhhHHHHHHHHHHHHHhhcCCCcccchHHHHHhhHHHHHHHHhcCChHHHHHHHHHHHHhc-CCCCCchHHHhHHH
Confidence 35667778899999999999999998888889999999888754 2 4667777766543 24566777888899
Q ss_pred HHHHcCCHHHHHHHHHHHHHHhccCCCchhchHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCcH
Q 006120 168 CLYVLGRYREAKEEYLLALEAAETGGNQWAYLLPQIYVNLGIALEGEGMVLSACEYYRESAILCPTHF 235 (660)
Q Consensus 168 ~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~ 235 (660)
+|..+|++++-++.|.-|++..|+.+..... ...+.+.+-.+... +...|....--++...|...
T Consensus 561 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~ 625 (932)
T PRK13184 561 VYQRLGEYNEEIKSLLLALKRYSQHPEISRL-RDHLVYRLHESLYK--HRREALVFMLLALWIAPEKI 625 (932)
T ss_pred HHHHhhhHHHHHHHHHHHHHhcCCCCccHHH-HHHHHHHHHHHHHH--HHHHHHHHHHHHHHhCcccc
Confidence 9999999999999999999999987653321 22223333333222 23455566666666667653
No 337
>KOG1463 consensus 26S proteasome regulatory complex, subunit RPN6/PSMD11 [Posttranslational modification, protein turnover, chaperones]
Probab=93.64 E-value=6.6 Score=39.94 Aligned_cols=175 Identities=10% Similarity=0.063 Sum_probs=112.1
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHhhc---cCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-----CCCH--
Q 006120 90 KRVFWEESTHDYAVFVKELGVLRNRADGA---RSREEAFDGHMAIGRVLYEHQLFKEALVSFKRACELQ-----PTDV-- 159 (660)
Q Consensus 90 ~~~~l~~~~~~~g~~~~Al~~l~~a~~~~---~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-----p~~~-- 159 (660)
....+..++.+.++|.+|+......+... .+.....+.+..-...|+...+..+|...+..|-... |...
T Consensus 130 Learli~Ly~d~~~YteAlaL~~~L~rElKKlDDK~lLvev~llESK~y~~l~Nl~KakasLTsART~AnaiYcpPqlQa 209 (411)
T KOG1463|consen 130 LEARLIRLYNDTKRYTEALALINDLLRELKKLDDKILLVEVHLLESKAYHALRNLPKAKASLTSARTTANAIYCPPQLQA 209 (411)
T ss_pred HHHHHHHHHHhhHHHHHHHHHHHHHHHHHHhcccccceeeehhhhhHHHHHHhcchhHHHHHHHHHHhhcccccCHHHHH
Confidence 34445678889999999999887766544 4555556778888899999999999988887776542 2221
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHhccCCCchhchHHHHHHHHHHHHHHCCCHHHHHH--HHHHHHHhCCCcHHH
Q 006120 160 RPHFRAGNCLYVLGRYREAKEEYLLALEAAETGGNQWAYLLPQIYVNLGIALEGEGMVLSACE--YYRESAILCPTHFRA 237 (660)
Q Consensus 160 ~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~--~~~~al~~~p~~~~~ 237 (660)
..=..-|.++....+|..|..+|-+|++-.....+... ...++-.+-.+-...+..++--. .-+.+++......++
T Consensus 210 ~lDLqSGIlha~ekDykTafSYFyEAfEgf~s~~~~v~--A~~sLKYMlLcKIMln~~ddv~~lls~K~~l~y~g~~i~A 287 (411)
T KOG1463|consen 210 TLDLQSGILHAAEKDYKTAFSYFYEAFEGFDSLDDDVK--ALTSLKYMLLCKIMLNLPDDVAALLSAKLALKYAGRDIDA 287 (411)
T ss_pred HHHHhccceeecccccchHHHHHHHHHccccccCCcHH--HHHHHHHHHHHHHHhcCHHHHHHHHhhHHHHhccCcchHH
Confidence 22233466677778999999999999987655444322 22222223333334455554333 334455555666677
Q ss_pred HHHHHHHHHH--CCCHHHHHHHHHHHHHhCC
Q 006120 238 LKLLGSALFG--VGEYRAAVKALEEAIFIKP 266 (660)
Q Consensus 238 ~~~lg~~~~~--~g~~~~A~~~~~~al~~~p 266 (660)
....+..+.+ ..+|+.|+.-|..-+..+|
T Consensus 288 mkavAeA~~nRSLkdF~~AL~~yk~eL~~D~ 318 (411)
T KOG1463|consen 288 MKAVAEAFGNRSLKDFEKALADYKKELAEDP 318 (411)
T ss_pred HHHHHHHhcCCcHHHHHHHHHHhHHHHhcCh
Confidence 7777776654 3567777777776666554
No 338
>PRK15180 Vi polysaccharide biosynthesis protein TviD; Provisional
Probab=93.51 E-value=0.49 Score=49.73 Aligned_cols=124 Identities=12% Similarity=0.058 Sum_probs=103.4
Q ss_pred HHCCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhCCChHHHHHH
Q 006120 212 EGEGMVLSACEYYRESAILCPTHFRALKLLGSALFGVGEYRAAVKALEEAIFIKPDYADAHCDLASALHAMGEDERAIEV 291 (660)
Q Consensus 212 ~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~ 291 (660)
...|+...|-+-...++...|..+......+.+....|.|+.|...+..+-..-.....+..-+-..+..+|++++|...
T Consensus 300 ~~~gd~~aas~~~~~~lr~~~~~p~~i~l~~~i~~~lg~ye~~~~~~s~~~~~~~s~~~~~~~~~r~~~~l~r~~~a~s~ 379 (831)
T PRK15180 300 LADGDIIAASQQLFAALRNQQQDPVLIQLRSVIFSHLGYYEQAYQDISDVEKIIGTTDSTLRCRLRSLHGLARWREALST 379 (831)
T ss_pred hhccCHHHHHHHHHHHHHhCCCCchhhHHHHHHHHHhhhHHHHHHHhhchhhhhcCCchHHHHHHHhhhchhhHHHHHHH
Confidence 45789999999999999999999999999999999999999999988877666555555666666777889999999999
Q ss_pred HHHHHHhCCCCHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHcccCC
Q 006120 292 FQKAIDLKPGHVDALYNLGGLYMDLGAGETEEAKKALKEALKMTNR 337 (660)
Q Consensus 292 ~~~al~~~p~~~~a~~~La~~~~~~~~g~~~eA~~~~~~al~l~p~ 337 (660)
..-.+.-.-++++....-+.....+ |-+++|..++++.+.++|.
T Consensus 380 a~~~l~~eie~~ei~~iaa~sa~~l--~~~d~~~~~wk~~~~~~~~ 423 (831)
T PRK15180 380 AEMMLSNEIEDEEVLTVAAGSADAL--QLFDKSYHYWKRVLLLNPE 423 (831)
T ss_pred HHHHhccccCChhheeeecccHHHH--hHHHHHHHHHHHHhccCCh
Confidence 8888877777777766666666666 8899999999999999875
No 339
>PF12862 Apc5: Anaphase-promoting complex subunit 5
Probab=93.41 E-value=0.77 Score=37.96 Aligned_cols=63 Identities=17% Similarity=0.177 Sum_probs=48.6
Q ss_pred HHHHcCCHHHHHHHHHHHHHhCCC---------CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhccCCCch
Q 006120 134 VLYEHQLFKEALVSFKRACELQPT---------DVRPHFRAGNCLYVLGRYREAKEEYLLALEAAETGGNQW 196 (660)
Q Consensus 134 ~~~~~g~~~~A~~~~~~al~~~p~---------~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~ 196 (660)
.....|+|.+|++.+.+..+.... ...+..++|.++...|++++|+..+++++++.....+..
T Consensus 7 ~~~~~~dy~~A~d~L~~~fD~~~~~~~~~~~~~~~~all~lA~~~~~~G~~~~A~~~l~eAi~~Are~~D~~ 78 (94)
T PF12862_consen 7 NALRSGDYSEALDALHRYFDYAKQSNNSSSNSGLAYALLNLAELHRRFGHYEEALQALEEAIRLARENGDRR 78 (94)
T ss_pred HHHHcCCHHHHHHHHHHHHHHHhhcccchhhHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHCCHH
Confidence 345678888888888877765321 135677889999999999999999999999988766643
No 340
>KOG2041 consensus WD40 repeat protein [General function prediction only]
Probab=93.35 E-value=3.1 Score=46.00 Aligned_cols=155 Identities=14% Similarity=0.091 Sum_probs=72.9
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC---------HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHh-------
Q 006120 126 DGHMAIGRVLYEHQLFKEALVSFKRACELQPTD---------VRPHFRAGNCLYVLGRYREAKEEYLLALEAA------- 189 (660)
Q Consensus 126 ~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~---------~~~~~~la~~~~~~g~~~~A~~~~~~al~~~------- 189 (660)
+.|..+|......-.++.|...|-+.-... .- ..--...|.+-.--|++++|.+.|-.+-..+
T Consensus 693 rLWrllAe~Al~Kl~l~tAE~AFVrc~dY~-Gik~vkrl~~i~s~~~q~aei~~~~g~feeaek~yld~drrDLAielr~ 771 (1189)
T KOG2041|consen 693 RLWRLLAEYALFKLALDTAEHAFVRCGDYA-GIKLVKRLRTIHSKEQQRAEISAFYGEFEEAEKLYLDADRRDLAIELRK 771 (1189)
T ss_pred HHHHHHHHHHHHHHhhhhHhhhhhhhcccc-chhHHHHhhhhhhHHHHhHhHhhhhcchhHhhhhhhccchhhhhHHHHH
Confidence 566677777666666666666665543221 10 0001223334444466666666653322111
Q ss_pred ------------cc-CCCchhchHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHCCCHHHHHH
Q 006120 190 ------------ET-GGNQWAYLLPQIYVNLGIALEGEGMVLSACEYYRESAILCPTHFRALKLLGSALFGVGEYRAAVK 256 (660)
Q Consensus 190 ------------p~-~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~ 256 (660)
.. ..+........++.++|..+..+..|++|.++|.+.-.. -++..+++....+++-..
T Consensus 772 klgDwfrV~qL~r~g~~d~dD~~~e~A~r~ig~~fa~~~~We~A~~yY~~~~~~--------e~~~ecly~le~f~~LE~ 843 (1189)
T KOG2041|consen 772 KLGDWFRVYQLIRNGGSDDDDEGKEDAFRNIGETFAEMMEWEEAAKYYSYCGDT--------ENQIECLYRLELFGELEV 843 (1189)
T ss_pred hhhhHHHHHHHHHccCCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccch--------HhHHHHHHHHHhhhhHHH
Confidence 00 000000113455556666666666666666666543111 122333333333332221
Q ss_pred HHHHHHHhCCCCHHHHHHHHHHHHhCCChHHHHHHHH
Q 006120 257 ALEEAIFIKPDYADAHCDLASALHAMGEDERAIEVFQ 293 (660)
Q Consensus 257 ~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~ 293 (660)
....-|++...+-.+|..+...|.-++|.+.|-
T Consensus 844 ----la~~Lpe~s~llp~~a~mf~svGMC~qAV~a~L 876 (1189)
T KOG2041|consen 844 ----LARTLPEDSELLPVMADMFTSVGMCDQAVEAYL 876 (1189)
T ss_pred ----HHHhcCcccchHHHHHHHHHhhchHHHHHHHHH
Confidence 112236666666667777776676666666553
No 341
>KOG2041 consensus WD40 repeat protein [General function prediction only]
Probab=93.27 E-value=4.3 Score=44.92 Aligned_cols=135 Identities=13% Similarity=0.022 Sum_probs=68.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhccCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC--CCCHHHHHHHHHHHHH
Q 006120 94 WEESTHDYAVFVKELGVLRNRADGARSREEAFDGHMAIGRVLYEHQLFKEALVSFKRACELQ--PTDVRPHFRAGNCLYV 171 (660)
Q Consensus 94 l~~~~~~~g~~~~Al~~l~~a~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~--p~~~~~~~~la~~~~~ 171 (660)
.+++-.-+|.|++|.+.|.++-.+ + .....+...|+|-.-..+++..-.-+ .....++.++|..+..
T Consensus 740 ~aei~~~~g~feeaek~yld~drr----D-------LAielr~klgDwfrV~qL~r~g~~d~dD~~~e~A~r~ig~~fa~ 808 (1189)
T KOG2041|consen 740 RAEISAFYGEFEEAEKLYLDADRR----D-------LAIELRKKLGDWFRVYQLIRNGGSDDDDEGKEDAFRNIGETFAE 808 (1189)
T ss_pred hHhHhhhhcchhHhhhhhhccchh----h-------hhHHHHHhhhhHHHHHHHHHccCCCcchHHHHHHHHHHHHHHHH
Confidence 355666677777777776654221 1 11123344455555444443321111 1124567777777777
Q ss_pred cCCHHHHHHHHHHHHHHhccCCCchhchHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHCCCH
Q 006120 172 LGRYREAKEEYLLALEAAETGGNQWAYLLPQIYVNLGIALEGEGMVLSACEYYRESAILCPTHFRALKLLGSALFGVGEY 251 (660)
Q Consensus 172 ~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~ 251 (660)
+..|++|.++|.+.-.. -++..+++...++++-..+ ...-|++...+-.+|.++...|--
T Consensus 809 ~~~We~A~~yY~~~~~~----------------e~~~ecly~le~f~~LE~l----a~~Lpe~s~llp~~a~mf~svGMC 868 (1189)
T KOG2041|consen 809 MMEWEEAAKYYSYCGDT----------------ENQIECLYRLELFGELEVL----ARTLPEDSELLPVMADMFTSVGMC 868 (1189)
T ss_pred HHHHHHHHHHHHhccch----------------HhHHHHHHHHHhhhhHHHH----HHhcCcccchHHHHHHHHHhhchH
Confidence 77777777777554322 1223344444444433222 223355555555556655555555
Q ss_pred HHHHHHHH
Q 006120 252 RAAVKALE 259 (660)
Q Consensus 252 ~~A~~~~~ 259 (660)
++|++.|-
T Consensus 869 ~qAV~a~L 876 (1189)
T KOG2041|consen 869 DQAVEAYL 876 (1189)
T ss_pred HHHHHHHH
Confidence 55555543
No 342
>COG4976 Predicted methyltransferase (contains TPR repeat) [General function prediction only]
Probab=93.19 E-value=0.14 Score=48.75 Aligned_cols=57 Identities=21% Similarity=0.381 Sum_probs=32.8
Q ss_pred HHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhCCChHHHHHHHHHHHHhCCCC
Q 006120 246 FGVGEYRAAVKALEEAIFIKPDYADAHCDLASALHAMGEDERAIEVFQKAIDLKPGH 302 (660)
Q Consensus 246 ~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~ 302 (660)
.+.++.+.|.+.|.+++.+.|+....|+.+|....+.|+.+.|.+.|++.++++|.+
T Consensus 6 ~~~~D~~aaaely~qal~lap~w~~gwfR~g~~~ekag~~daAa~a~~~~L~ldp~D 62 (287)
T COG4976 6 AESGDAEAAAELYNQALELAPEWAAGWFRLGEYTEKAGEFDAAAAAYEEVLELDPED 62 (287)
T ss_pred cccCChHHHHHHHHHHhhcCchhhhhhhhcchhhhhcccHHHHHHHHHHHHcCCccc
Confidence 344555555555555555555555555555555555555555555555555555544
No 343
>PF11207 DUF2989: Protein of unknown function (DUF2989); InterPro: IPR021372 Some members in this bacterial family of proteins are annotated as lipoproteins however this cannot be confirmed.
Probab=93.10 E-value=4.4 Score=38.33 Aligned_cols=105 Identities=15% Similarity=0.053 Sum_probs=72.3
Q ss_pred HHHHHHHHHHHHhhccCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHH
Q 006120 104 FVKELGVLRNRADGARSREEAFDGHMAIGRVLYEHQLFKEALVSFKRACELQ-PTDVRPHFRAGNCLYVLGRYREAKEEY 182 (660)
Q Consensus 104 ~~~Al~~l~~a~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~la~~~~~~g~~~~A~~~~ 182 (660)
-.+.+..+.+..+...++. +...++.+-.-++|...|-++-... -++++..+.+|..|. ..+.++|+.++
T Consensus 93 s~~~l~~L~~~tk~S~dP~--------llYy~Wsr~~d~~A~~~fL~~E~~~~l~t~elq~aLAtyY~-krD~~Kt~~ll 163 (203)
T PF11207_consen 93 SYQELERLQEETKNSQDPY--------LLYYHWSRFGDQEALRRFLQLEGTPELETAELQYALATYYT-KRDPEKTIQLL 163 (203)
T ss_pred HHHHHHHHHHHHccCCCcc--------HHHHHhhccCcHHHHHHHHHHcCCCCCCCHHHHHHHHHHHH-ccCHHHHHHHH
Confidence 3344444444444444442 2234445544477777776654332 246888888887776 77899999999
Q ss_pred HHHHHHhccCCCchhchHHHHHHHHHHHHHHCCCHHHHH
Q 006120 183 LLALEAAETGGNQWAYLLPQIYVNLGIALEGEGMVLSAC 221 (660)
Q Consensus 183 ~~al~~~p~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~ 221 (660)
.+++++.+..... .+.++..|+.++.++|+++.|.
T Consensus 164 ~~~L~l~~~~~~~----n~eil~sLas~~~~~~~~e~AY 198 (203)
T PF11207_consen 164 LRALELSNPDDNF----NPEILKSLASIYQKLKNYEQAY 198 (203)
T ss_pred HHHHHhcCCCCCC----CHHHHHHHHHHHHHhcchhhhh
Confidence 9999998765322 6899999999999999999885
No 344
>TIGR02561 HrpB1_HrpK type III secretion protein HrpB1/HrpK. This gene is found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia.
Probab=93.06 E-value=1.4 Score=39.30 Aligned_cols=69 Identities=12% Similarity=0.019 Sum_probs=34.6
Q ss_pred CCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhCCChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHh
Q 006120 248 VGEYRAAVKALEEAIFIKPDYADAHCDLASALHAMGEDERAIEVFQKAIDLKPGHVDALYNLGGLYMDL 316 (660)
Q Consensus 248 ~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~La~~~~~~ 316 (660)
.++.+++...+...--+.|+.+..-..-|.++...|++.+|+..++...+-.+..+.+.-.++.++..+
T Consensus 23 ~~d~~D~e~lLdALrvLrP~~~e~d~~dg~l~i~rg~w~eA~rvlr~l~~~~~~~p~~kAL~A~CL~al 91 (153)
T TIGR02561 23 SADPYDAQAMLDALRVLRPNLKELDMFDGWLLIARGNYDEAARILRELLSSAGAPPYGKALLALCLNAK 91 (153)
T ss_pred cCCHHHHHHHHHHHHHhCCCccccchhHHHHHHHcCCHHHHHHHHHhhhccCCCchHHHHHHHHHHHhc
Confidence 445555555555444445555555555555555555555555555554444444444444444444444
No 345
>KOG3807 consensus Predicted membrane protein ST7 (tumor suppressor in humans) [General function prediction only]
Probab=93.05 E-value=9 Score=38.76 Aligned_cols=60 Identities=12% Similarity=-0.004 Sum_probs=45.6
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHh
Q 006120 128 HMAIGRVLYEHQLFKEALVSFKRACELQPTDVRPHFRAGNCLYVLGRYREAKEEYLLALEAA 189 (660)
Q Consensus 128 ~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~ 189 (660)
-+.+-....+..+..+-++....+++++|..+.++..++.-- ..-..+|.+.++++++..
T Consensus 187 e~eIMQ~AWRERnp~~RI~~A~~ALeIN~eCA~AyvLLAEEE--a~Ti~~AE~l~k~ALka~ 246 (556)
T KOG3807|consen 187 EDEIMQKAWRERNPPARIKAAYQALEINNECATAYVLLAEEE--ATTIVDAERLFKQALKAG 246 (556)
T ss_pred HHHHHHHHHHhcCcHHHHHHHHHHHhcCchhhhHHHhhhhhh--hhhHHHHHHHHHHHHHHH
Confidence 345556667777888888999999999999999888887532 334567888888888754
No 346
>KOG1310 consensus WD40 repeat protein [General function prediction only]
Probab=93.02 E-value=0.35 Score=51.45 Aligned_cols=88 Identities=20% Similarity=0.105 Sum_probs=70.6
Q ss_pred CCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhC---CChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCCCHHHH
Q 006120 248 VGEYRAAVKALEEAIFIKPDYADAHCDLASALHAM---GEDERAIEVFQKAIDLKPGHVDALYNLGGLYMDLGAGETEEA 324 (660)
Q Consensus 248 ~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~---g~~~~A~~~~~~al~~~p~~~~a~~~La~~~~~~~~g~~~eA 324 (660)
.+....|+..|.+++...|.....+.+.+.++++. |+.-.|+.-...|++++|....+++.|+.++..+ +++.+|
T Consensus 387 ~~~~~~~i~~~s~a~q~~~~~~~~l~nraa~lmkRkW~~d~~~AlrDch~Alrln~s~~kah~~la~aL~el--~r~~ea 464 (758)
T KOG1310|consen 387 ESIVSGAISHYSRAIQYVPDAIYLLENRAAALMKRKWRGDSYLALRDCHVALRLNPSIQKAHFRLARALNEL--TRYLEA 464 (758)
T ss_pred hHHHHHHHHHHHHHhhhccchhHHHHhHHHHHHhhhccccHHHHHHhHHhhccCChHHHHHHHHHHHHHHHH--hhHHHh
Confidence 34566788888888888888888888888887753 5666777778888888888888888888888888 888888
Q ss_pred HHHHHHHHcccCC
Q 006120 325 KKALKEALKMTNR 337 (660)
Q Consensus 325 ~~~~~~al~l~p~ 337 (660)
+.+...+....|.
T Consensus 465 l~~~~alq~~~Pt 477 (758)
T KOG1310|consen 465 LSCHWALQMSFPT 477 (758)
T ss_pred hhhHHHHhhcCch
Confidence 8888777777674
No 347
>KOG2396 consensus HAT (Half-A-TPR) repeat-containing protein [General function prediction only]
Probab=92.98 E-value=1.5 Score=46.71 Aligned_cols=92 Identities=8% Similarity=-0.030 Sum_probs=78.6
Q ss_pred HHHHHHHHHHHHHhccCCCchhchHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHCCC-HHHH
Q 006120 176 REAKEEYLLALEAAETGGNQWAYLLPQIYVNLGIALEGEGMVLSACEYYRESAILCPTHFRALKLLGSALFGVGE-YRAA 254 (660)
Q Consensus 176 ~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~-~~~A 254 (660)
..-...|+.|+...+. ....|........+.+.+.+-...|.+++..+|++++.|..-|.-.+..+. .+.|
T Consensus 88 ~rIv~lyr~at~rf~~--------D~~lW~~yi~f~kk~~~~~~v~ki~~~~l~~Hp~~~dLWI~aA~wefe~n~ni~sa 159 (568)
T KOG2396|consen 88 NRIVFLYRRATNRFNG--------DVKLWLSYIAFCKKKKTYGEVKKIFAAMLAKHPNNPDLWIYAAKWEFEINLNIESA 159 (568)
T ss_pred HHHHHHHHHHHHhcCC--------CHHHHHHHHHHHHHhcchhHHHHHHHHHHHhCCCCchhHHhhhhhHHhhccchHHH
Confidence 3445677888888776 567777777777788889999999999999999999999999988888776 8999
Q ss_pred HHHHHHHHHhCCCCHHHHHHH
Q 006120 255 VKALEEAIFIKPDYADAHCDL 275 (660)
Q Consensus 255 ~~~~~~al~~~p~~~~~~~~l 275 (660)
...+.++++.+|+.+..|...
T Consensus 160 RalflrgLR~npdsp~Lw~ey 180 (568)
T KOG2396|consen 160 RALFLRGLRFNPDSPKLWKEY 180 (568)
T ss_pred HHHHHHHhhcCCCChHHHHHH
Confidence 999999999999999887644
No 348
>TIGR02561 HrpB1_HrpK type III secretion protein HrpB1/HrpK. This gene is found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia.
Probab=92.90 E-value=4.6 Score=36.17 Aligned_cols=87 Identities=20% Similarity=0.113 Sum_probs=76.2
Q ss_pred HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHH
Q 006120 200 LPQIYVNLGIALEGEGMVLSACEYYRESAILCPTHFRALKLLGSALFGVGEYRAAVKALEEAIFIKPDYADAHCDLASAL 279 (660)
Q Consensus 200 ~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~ 279 (660)
....+......-...++.+++...+...--+.|+.+..-..-|.++...|+|.+|+..++...+-.+..+..-..++.|+
T Consensus 9 iv~gLi~~~~~aL~~~d~~D~e~lLdALrvLrP~~~e~d~~dg~l~i~rg~w~eA~rvlr~l~~~~~~~p~~kAL~A~CL 88 (153)
T TIGR02561 9 LLGGLIEVLMYALRSADPYDAQAMLDALRVLRPNLKELDMFDGWLLIARGNYDEAARILRELLSSAGAPPYGKALLALCL 88 (153)
T ss_pred HHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCccccchhHHHHHHHcCCHHHHHHHHHhhhccCCCchHHHHHHHHHH
Confidence 34555666666677999999999999998999999999999999999999999999999999998888888888899999
Q ss_pred HhCCChH
Q 006120 280 HAMGEDE 286 (660)
Q Consensus 280 ~~~g~~~ 286 (660)
..+|+.+
T Consensus 89 ~al~Dp~ 95 (153)
T TIGR02561 89 NAKGDAE 95 (153)
T ss_pred HhcCChH
Confidence 8888753
No 349
>KOG1310 consensus WD40 repeat protein [General function prediction only]
Probab=92.76 E-value=0.38 Score=51.16 Aligned_cols=92 Identities=23% Similarity=0.214 Sum_probs=80.8
Q ss_pred HHCCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHC---CCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhCCChHHH
Q 006120 212 EGEGMVLSACEYYRESAILCPTHFRALKLLGSALFGV---GEYRAAVKALEEAIFIKPDYADAHCDLASALHAMGEDERA 288 (660)
Q Consensus 212 ~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~---g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A 288 (660)
...+....|+..|.+++...|.....+.+.+.++++. |+.-.|+.-...|++++|....+|+.|+.++.+++++.+|
T Consensus 385 ly~~~~~~~i~~~s~a~q~~~~~~~~l~nraa~lmkRkW~~d~~~AlrDch~Alrln~s~~kah~~la~aL~el~r~~ea 464 (758)
T KOG1310|consen 385 LYESIVSGAISHYSRAIQYVPDAIYLLENRAAALMKRKWRGDSYLALRDCHVALRLNPSIQKAHFRLARALNELTRYLEA 464 (758)
T ss_pred hhhHHHHHHHHHHHHHhhhccchhHHHHhHHHHHHhhhccccHHHHHHhHHhhccCChHHHHHHHHHHHHHHHHhhHHHh
Confidence 3345678899999999999999999999999998875 5677788888899999999999999999999999999999
Q ss_pred HHHHHHHHHhCCCCH
Q 006120 289 IEVFQKAIDLKPGHV 303 (660)
Q Consensus 289 ~~~~~~al~~~p~~~ 303 (660)
+.+...+....|.+.
T Consensus 465 l~~~~alq~~~Ptd~ 479 (758)
T KOG1310|consen 465 LSCHWALQMSFPTDV 479 (758)
T ss_pred hhhHHHHhhcCchhh
Confidence 999988888888543
No 350
>KOG2422 consensus Uncharacterized conserved protein [Function unknown]
Probab=92.64 E-value=12 Score=40.74 Aligned_cols=163 Identities=17% Similarity=0.132 Sum_probs=110.1
Q ss_pred cCCHHHHHHHHHHHHHhC------------CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHh-----c----cCCCc-
Q 006120 138 HQLFKEALVSFKRACELQ------------PTDVRPHFRAGNCLYVLGRYREAKEEYLLALEAA-----E----TGGNQ- 195 (660)
Q Consensus 138 ~g~~~~A~~~~~~al~~~------------p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~-----p----~~~~~- 195 (660)
...|++|...|.-+.... |.+...+..++.+...+|+.+-|....++++=.. | ..+..
T Consensus 251 s~sYeqaq~~F~~av~~~d~n~v~~lL~ssPYHvdsLLqva~~~r~qgD~e~aadLieR~Ly~~d~a~hp~F~~~sg~cR 330 (665)
T KOG2422|consen 251 SNSYEQAQRDFYLAVIVHDPNNVLILLISSPYHVDSLLQVADIFRFQGDREMAADLIERGLYVFDRALHPNFIPFSGNCR 330 (665)
T ss_pred chHHHHHHHHHHHHHhhcCCcceeeeeccCCcchhHHHHHHHHHHHhcchhhHHHHHHHHHHHHHHHhcccccccccccc
Confidence 456889998888887753 6678899999999999999999999888887432 1 11110
Q ss_pred ------hhchHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCC-cHHHHHHHHHHHH-HCCCHHHHHHHHHHHHHh---
Q 006120 196 ------WAYLLPQIYVNLGIALEGEGMVLSACEYYRESAILCPT-HFRALKLLGSALF-GVGEYRAAVKALEEAIFI--- 264 (660)
Q Consensus 196 ------~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~~lg~~~~-~~g~~~~A~~~~~~al~~--- 264 (660)
.......+++..-..+.+.|-+..|.++.+-.+.++|. ++-+...+..+|. +..+|+--+..++..-..
T Consensus 331 L~y~~~eNR~FyL~l~r~m~~l~~RGC~rTA~E~cKlllsLdp~eDPl~~l~~ID~~ALrareYqwiI~~~~~~e~~n~l 410 (665)
T KOG2422|consen 331 LPYIYPENRQFYLALFRYMQSLAQRGCWRTALEWCKLLLSLDPSEDPLGILYLIDIYALRAREYQWIIELSNEPENMNKL 410 (665)
T ss_pred CcccchhhHHHHHHHHHHHHHHHhcCChHHHHHHHHHHhhcCCcCCchhHHHHHHHHHHHHHhHHHHHHHHHHHHhhccH
Confidence 00002234444455667788899999999999999988 6666555555544 456676666666655332
Q ss_pred --CCCCHHHHHHHHHHHHhCCC---hHHHHHHHHHHHHhCCC
Q 006120 265 --KPDYADAHCDLASALHAMGE---DERAIEVFQKAIDLKPG 301 (660)
Q Consensus 265 --~p~~~~~~~~la~~~~~~g~---~~~A~~~~~~al~~~p~ 301 (660)
-|+. ..-..+|..|..... -+.|...+.+|+.+.|.
T Consensus 411 ~~~PN~-~yS~AlA~f~l~~~~~~~rqsa~~~l~qAl~~~P~ 451 (665)
T KOG2422|consen 411 SQLPNF-GYSLALARFFLRKNEEDDRQSALNALLQALKHHPL 451 (665)
T ss_pred hhcCCc-hHHHHHHHHHHhcCChhhHHHHHHHHHHHHHhCcH
Confidence 3432 333456666666655 56788888888888774
No 351
>PRK15180 Vi polysaccharide biosynthesis protein TviD; Provisional
Probab=92.62 E-value=1.7 Score=45.82 Aligned_cols=128 Identities=11% Similarity=-0.055 Sum_probs=86.8
Q ss_pred HHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhccCCCchhchHHHHHHHHHHHHHH
Q 006120 134 VLYEHQLFKEALVSFKRACELQPTDVRPHFRAGNCLYVLGRYREAKEEYLLALEAAETGGNQWAYLLPQIYVNLGIALEG 213 (660)
Q Consensus 134 ~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~la~~~~~ 213 (660)
-.+..|+.-.|-.-...++...|..+......+.+...+|.|+.|...+..+-..-.. -..+...+-.....
T Consensus 298 k~~~~gd~~aas~~~~~~lr~~~~~p~~i~l~~~i~~~lg~ye~~~~~~s~~~~~~~s--------~~~~~~~~~r~~~~ 369 (831)
T PRK15180 298 KQLADGDIIAASQQLFAALRNQQQDPVLIQLRSVIFSHLGYYEQAYQDISDVEKIIGT--------TDSTLRCRLRSLHG 369 (831)
T ss_pred HHhhccCHHHHHHHHHHHHHhCCCCchhhHHHHHHHHHhhhHHHHHHHhhchhhhhcC--------CchHHHHHHHhhhc
Confidence 3455677777777777788888888777777788888888888887777655544333 12233334445566
Q ss_pred CCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCH
Q 006120 214 EGMVLSACEYYRESAILCPTHFRALKLLGSALFGVGEYRAAVKALEEAIFIKPDYA 269 (660)
Q Consensus 214 ~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~ 269 (660)
+|++++|.....-.+...-.+++....-+......|-+++|..+.++.+.++|...
T Consensus 370 l~r~~~a~s~a~~~l~~eie~~ei~~iaa~sa~~l~~~d~~~~~wk~~~~~~~~~~ 425 (831)
T PRK15180 370 LARWREALSTAEMMLSNEIEDEEVLTVAAGSADALQLFDKSYHYWKRVLLLNPETQ 425 (831)
T ss_pred hhhHHHHHHHHHHHhccccCChhheeeecccHHHHhHHHHHHHHHHHHhccCChhc
Confidence 77888887777776666556666655555555666777888888888887776543
No 352
>KOG1538 consensus Uncharacterized conserved protein WDR10, contains WD40 repeats [General function prediction only]
Probab=92.52 E-value=6.1 Score=43.43 Aligned_cols=22 Identities=5% Similarity=0.105 Sum_probs=13.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHH
Q 006120 92 VFWEESTHDYAVFVKELGVLRN 113 (660)
Q Consensus 92 ~~l~~~~~~~g~~~~Al~~l~~ 113 (660)
+.++......|+|.+|.+.+.+
T Consensus 636 iLlA~~~Ay~gKF~EAAklFk~ 657 (1081)
T KOG1538|consen 636 LLLADVFAYQGKFHEAAKLFKR 657 (1081)
T ss_pred HHHHHHHHhhhhHHHHHHHHHH
Confidence 3445556666666666666654
No 353
>KOG2581 consensus 26S proteasome regulatory complex, subunit RPN3/PSMD3 [Posttranslational modification, protein turnover, chaperones]
Probab=92.47 E-value=16 Score=38.27 Aligned_cols=197 Identities=15% Similarity=0.044 Sum_probs=122.3
Q ss_pred HHHHcCCHHHHHHHHHHHHHhC----CC-----CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhccCCCchhchHHHHH
Q 006120 134 VLYEHQLFKEALVSFKRACELQ----PT-----DVRPHFRAGNCLYVLGRYREAKEEYLLALEAAETGGNQWAYLLPQIY 204 (660)
Q Consensus 134 ~~~~~g~~~~A~~~~~~al~~~----p~-----~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~ 204 (660)
.++.+.++++|.++-...+..- .. .+..|+.+..+|...|+...-...+...+....-..+... .+...
T Consensus 135 fl~d~K~~kea~~~~~~~l~~i~~~nrRtlD~i~ak~~fy~~l~~E~~~~l~~~rs~l~~~lrtAtLrhd~e~--qavLi 212 (493)
T KOG2581|consen 135 FLIDQKEYKEADKISDALLASISIQNRRTLDLIAAKLYFYLYLSYELEGRLADIRSFLHALLRTATLRHDEEG--QAVLI 212 (493)
T ss_pred HHHhhHHHHHHHHHHHHHHHHHHhcchhhHHHHHHHHHHHHHHHHHhhcchHHHHHHHHHHHHHhhhcCcchh--HHHHH
Confidence 3345688899888877665431 11 2467788888888999977777777666665443323222 56666
Q ss_pred HHHHHHHHHCCCHHHHHHHHHHHHHh----CCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHH------HHH
Q 006120 205 VNLGIALEGEGMVLSACEYYRESAIL----CPTHFRALKLLGSALFGVGEYRAAVKALEEAIFIKPDYADA------HCD 274 (660)
Q Consensus 205 ~~la~~~~~~g~~~~A~~~~~~al~~----~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~------~~~ 274 (660)
+.+-..|...+.|+.|.....++.-- +...+..++.+|.+..-+++|..|.+++-+|+...|++... .-.
T Consensus 213 N~LLr~yL~n~lydqa~~lvsK~~~pe~~snne~ARY~yY~GrIkaiqldYssA~~~~~qa~rkapq~~alGf~q~v~k~ 292 (493)
T KOG2581|consen 213 NLLLRNYLHNKLYDQADKLVSKSVYPEAASNNEWARYLYYLGRIKAIQLDYSSALEYFLQALRKAPQHAALGFRQQVNKL 292 (493)
T ss_pred HHHHHHHhhhHHHHHHHHHhhcccCccccccHHHHHHHHHHhhHHHhhcchhHHHHHHHHHHHhCcchhhhhHHHHHHHH
Confidence 77778888889999998888776421 11235567788999999999999999999999999975322 122
Q ss_pred HHHHHHhCCChHHHHHHHHHHHHhCCCCHHHHHHHHHHHH--HhcCCCHHHHHHHHHHHHcccCC
Q 006120 275 LASALHAMGEDERAIEVFQKAIDLKPGHVDALYNLGGLYM--DLGAGETEEAKKALKEALKMTNR 337 (660)
Q Consensus 275 la~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~La~~~~--~~~~g~~~eA~~~~~~al~l~p~ 337 (660)
+-.+-..+|++.+-.-.-+..++. ....|+.|..+-. .+ .++.+-++-|..-+..+..
T Consensus 293 ~ivv~ll~geiPers~F~Qp~~~k---sL~~Yf~Lt~AVr~gdl--kkF~~~leq~k~~f~~D~t 352 (493)
T KOG2581|consen 293 MIVVELLLGEIPERSVFRQPGMRK---SLRPYFKLTQAVRLGDL--KKFNETLEQFKDKFQADGT 352 (493)
T ss_pred HHHHHHHcCCCcchhhhcCccHHH---HHHHHHHHHHHHHHhhH--HHHHHHHHHHHHHHhhCCc
Confidence 233334566665433222221111 1234555555432 22 3455555555555555544
No 354
>KOG0890 consensus Protein kinase of the PI-3 kinase family involved in mitotic growth, DNA repair and meiotic recombination [Signal transduction mechanisms; Chromatin structure and dynamics; Replication, recombination and repair; Cell cycle control, cell division, chromosome partitioning]
Probab=92.45 E-value=13 Score=47.18 Aligned_cols=148 Identities=13% Similarity=0.033 Sum_probs=105.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhc----cCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHH
Q 006120 93 FWEESTHDYAVFVKELGVLRNRADGA----RSREEAFDGHMAIGRVLYEHQLFKEALVSFKRACELQPTDVRPHFRAGNC 168 (660)
Q Consensus 93 ~l~~~~~~~g~~~~Al~~l~~a~~~~----~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~ 168 (660)
+..+.-....+..+-+-.+++..-.. .......+.|...|++....|+++.|-..+-.|.+.. -+.+....|..
T Consensus 1634 ~Rl~~tq~s~~~~epILa~RRs~l~~~~~~~~~~~~ge~wLqsAriaR~aG~~q~A~nall~A~e~r--~~~i~~E~AK~ 1711 (2382)
T KOG0890|consen 1634 NRLERTQPSFRIKEPILAFRRSMLDLRMRSNLKSRLGECWLQSARIARLAGHLQRAQNALLNAKESR--LPEIVLERAKL 1711 (2382)
T ss_pred HHHHHhchhHHHHhHHHHHHHHHHHHhccccccchhHHHHHHHHHHHHhcccHHHHHHHHHhhhhcc--cchHHHHHHHH
Confidence 33334444444555555666555433 2245667999999999999999999999999988876 57888999999
Q ss_pred HHHcCCHHHHHHHHHHHHHHhccCC---------CchhchHHHHHHHHHHHHHHCCCHH--HHHHHHHHHHHhCCCcHHH
Q 006120 169 LYVLGRYREAKEEYLLALEAAETGG---------NQWAYLLPQIYVNLGIALEGEGMVL--SACEYYRESAILCPTHFRA 237 (660)
Q Consensus 169 ~~~~g~~~~A~~~~~~al~~~p~~~---------~~~~~~~~~~~~~la~~~~~~g~~~--~A~~~~~~al~~~p~~~~~ 237 (660)
+...|+-..|+..+++.++.+-... .........+.+.++......++++ .-+.+|+.+.+..|.....
T Consensus 1712 lW~~gd~~~Al~~Lq~~l~~~~~~~~~~~~~~p~~~n~~i~~~~~L~~~~~~~es~n~~s~~ilk~Y~~~~ail~ewe~~ 1791 (2382)
T KOG0890|consen 1712 LWQTGDELNALSVLQEILSKNFPDLHTPYTDTPQSVNLLIFKKAKLKITKYLEESGNFESKDILKYYHDAKAILPEWEDK 1791 (2382)
T ss_pred HHhhccHHHHHHHHHHHHHhhcccccCCccccchhhhhhhhhhHHHHHHHHHHHhcchhHHHHHHHHHHHHHHcccccCc
Confidence 9999999999999999997653321 1111113345666666666666643 4577889999999877776
Q ss_pred HHHHH
Q 006120 238 LKLLG 242 (660)
Q Consensus 238 ~~~lg 242 (660)
++.+|
T Consensus 1792 hy~l~ 1796 (2382)
T KOG0890|consen 1792 HYHLG 1796 (2382)
T ss_pred eeeHH
Confidence 66666
No 355
>PF12862 Apc5: Anaphase-promoting complex subunit 5
Probab=92.41 E-value=0.98 Score=37.34 Aligned_cols=64 Identities=20% Similarity=0.096 Sum_probs=48.1
Q ss_pred HHHHcCCHHHHHHHHHHHHHHhccCCCch-hchHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC
Q 006120 168 CLYVLGRYREAKEEYLLALEAAETGGNQW-AYLLPQIYVNLGIALEGEGMVLSACEYYRESAILC 231 (660)
Q Consensus 168 ~~~~~g~~~~A~~~~~~al~~~p~~~~~~-~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~ 231 (660)
.....|++.+|++.+.+.+.......... ......+..++|.+....|++++|+..+++++++.
T Consensus 7 ~~~~~~dy~~A~d~L~~~fD~~~~~~~~~~~~~~~~all~lA~~~~~~G~~~~A~~~l~eAi~~A 71 (94)
T PF12862_consen 7 NALRSGDYSEALDALHRYFDYAKQSNNSSSNSGLAYALLNLAELHRRFGHYEEALQALEEAIRLA 71 (94)
T ss_pred HHHHcCCHHHHHHHHHHHHHHHhhcccchhhHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHH
Confidence 34678999999999999998876654432 00145667788888888888888888888888764
No 356
>COG5107 RNA14 Pre-mRNA 3'-end processing (cleavage and polyadenylation) factor [RNA processing and modification]
Probab=92.21 E-value=3.7 Score=43.19 Aligned_cols=175 Identities=10% Similarity=-0.043 Sum_probs=122.3
Q ss_pred HHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhccCCCchhchHHHHHHHHHHHHHHCCCHHHHHHHHHH
Q 006120 147 SFKRACELQPTDVRPHFRAGNCLYVLGRYREAKEEYLLALEAAETGGNQWAYLLPQIYVNLGIALEGEGMVLSACEYYRE 226 (660)
Q Consensus 147 ~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~ 226 (660)
.+++++...|-.+++|+.....+...++-+.|+...++++...|. ....++.++...++-+....+|++
T Consensus 290 ~~~q~~~y~~~~~evw~dys~Y~~~isd~q~al~tv~rg~~~sps-----------L~~~lse~yel~nd~e~v~~~fdk 358 (660)
T COG5107 290 IHNQILDYFYYAEEVWFDYSEYLIGISDKQKALKTVERGIEMSPS-----------LTMFLSEYYELVNDEEAVYGCFDK 358 (660)
T ss_pred HHHHHHHHhhhhHHHHHHHHHHHhhccHHHHHHHHHHhcccCCCc-----------hheeHHHHHhhcccHHHHhhhHHH
Confidence 467777777888889998888889999999999999988887765 445667777777776666666666
Q ss_pred HHHh------------------CCCc-HH-----------HHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHH
Q 006120 227 SAIL------------------CPTH-FR-----------ALKLLGSALFGVGEYRAAVKALEEAIFIKPDYADAHCDLA 276 (660)
Q Consensus 227 al~~------------------~p~~-~~-----------~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la 276 (660)
+++. +|.. .+ +|..+-+.-.+..-.+.|...|.++-+..-....++..-|
T Consensus 359 ~~q~L~r~ys~~~s~~~s~~D~N~e~~~Ell~kr~~k~t~v~C~~~N~v~r~~Gl~aaR~~F~k~rk~~~~~h~vyi~~A 438 (660)
T COG5107 359 CTQDLKRKYSMGESESASKVDNNFEYSKELLLKRINKLTFVFCVHLNYVLRKRGLEAARKLFIKLRKEGIVGHHVYIYCA 438 (660)
T ss_pred HHHHHHHHHhhhhhhhhccccCCccccHHHHHHHHhhhhhHHHHHHHHHHHHhhHHHHHHHHHHHhccCCCCcceeeeHH
Confidence 5431 1110 11 2222333334444567777788777665423333333333
Q ss_pred H-HHHhCCChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHcc
Q 006120 277 S-ALHAMGEDERAIEVFQKAIDLKPGHVDALYNLGGLYMDLGAGETEEAKKALKEALKM 334 (660)
Q Consensus 277 ~-~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~La~~~~~~~~g~~~eA~~~~~~al~l 334 (660)
. -+...|++.-|...|+-.+...|+.+......-..+... ++-+.|...|++++..
T Consensus 439 ~~E~~~~~d~~ta~~ifelGl~~f~d~~~y~~kyl~fLi~i--nde~naraLFetsv~r 495 (660)
T COG5107 439 FIEYYATGDRATAYNIFELGLLKFPDSTLYKEKYLLFLIRI--NDEENARALFETSVER 495 (660)
T ss_pred HHHHHhcCCcchHHHHHHHHHHhCCCchHHHHHHHHHHHHh--CcHHHHHHHHHHhHHH
Confidence 2 345789999999999999999999887777777777777 8999999999988754
No 357
>KOG1464 consensus COP9 signalosome, subunit CSN2 [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=92.14 E-value=13 Score=36.63 Aligned_cols=212 Identities=14% Similarity=0.063 Sum_probs=129.8
Q ss_pred HHHHHHHHHHHHHhhccC-cHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-----CCC-HHHHHHHHHHHHHcCCH
Q 006120 103 VFVKELGVLRNRADGARS-REEAFDGHMAIGRVLYEHQLFKEALVSFKRACELQ-----PTD-VRPHFRAGNCLYVLGRY 175 (660)
Q Consensus 103 ~~~~Al~~l~~a~~~~~~-~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-----p~~-~~~~~~la~~~~~~g~~ 175 (660)
...+|+.-+++.++.-+. -+.-+.++-.+..+.+.+++|++-++.|.+.+..- .+. ......+-..-....+.
T Consensus 42 ~p~~Al~sF~kVlelEgEKgeWGFKALKQmiKI~f~l~~~~eMm~~Y~qlLTYIkSAVTrNySEKsIN~IlDyiStS~~m 121 (440)
T KOG1464|consen 42 EPKEALSSFQKVLELEGEKGEWGFKALKQMIKINFRLGNYKEMMERYKQLLTYIKSAVTRNYSEKSINSILDYISTSKNM 121 (440)
T ss_pred CHHHHHHHHHHHHhcccccchhHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHHHHHhccccHHHHHHHHHHHhhhhhh
Confidence 577888888888877653 34456778888999999999999999998887531 111 12222222222233344
Q ss_pred HHHHHHHHHHHHHhccCCCchhchHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCC------------CcHHHHHHHHH
Q 006120 176 REAKEEYLLALEAAETGGNQWAYLLPQIYVNLGIALEGEGMVLSACEYYRESAILCP------------THFRALKLLGS 243 (660)
Q Consensus 176 ~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p------------~~~~~~~~lg~ 243 (660)
+--.+.|+..+..-.+..+.. +....-..+|.++...++|.+-...+++.-.... .-.+.|..-..
T Consensus 122 ~LLQ~FYeTTL~ALkdAKNeR--LWFKTNtKLgkl~fd~~e~~kl~KIlkqLh~SCq~edGedD~kKGtQLLEiYAlEIQ 199 (440)
T KOG1464|consen 122 DLLQEFYETTLDALKDAKNER--LWFKTNTKLGKLYFDRGEYTKLQKILKQLHQSCQTEDGEDDQKKGTQLLEIYALEIQ 199 (440)
T ss_pred HHHHHHHHHHHHHHHhhhcce--eeeeccchHhhhheeHHHHHHHHHHHHHHHHHhccccCchhhhccchhhhhHhhHhh
Confidence 444455555444322211110 0224456688888888888777766666543211 11345555667
Q ss_pred HHHHCCCHHHHHHHHHHHHHhCCCC--HHHH----HHHHHHHHhCCChHHHHHHHHHHHHhC-----CCCHH--HHHHHH
Q 006120 244 ALFGVGEYRAAVKALEEAIFIKPDY--ADAH----CDLASALHAMGEDERAIEVFQKAIDLK-----PGHVD--ALYNLG 310 (660)
Q Consensus 244 ~~~~~g~~~~A~~~~~~al~~~p~~--~~~~----~~la~~~~~~g~~~~A~~~~~~al~~~-----p~~~~--a~~~La 310 (660)
+|-.+++..+-...|++++.+...- +.+. -.=|...++.|++++|-..|=+|.+.. |.... -|..|+
T Consensus 200 mYT~qKnNKkLK~lYeqalhiKSAIPHPlImGvIRECGGKMHlreg~fe~AhTDFFEAFKNYDEsGspRRttCLKYLVLA 279 (440)
T KOG1464|consen 200 MYTEQKNNKKLKALYEQALHIKSAIPHPLIMGVIRECGGKMHLREGEFEKAHTDFFEAFKNYDESGSPRRTTCLKYLVLA 279 (440)
T ss_pred hhhhhcccHHHHHHHHHHHHhhccCCchHHHhHHHHcCCccccccchHHHHHhHHHHHHhcccccCCcchhHHHHHHHHH
Confidence 7888888888888999999885432 2222 223566778899999998888887753 22222 344556
Q ss_pred HHHHHh
Q 006120 311 GLYMDL 316 (660)
Q Consensus 311 ~~~~~~ 316 (660)
..+.+.
T Consensus 280 NMLmkS 285 (440)
T KOG1464|consen 280 NMLMKS 285 (440)
T ss_pred HHHHHc
Confidence 666555
No 358
>PF04190 DUF410: Protein of unknown function (DUF410) ; InterPro: IPR007317 This is a family of conserved eukaryotic proteins with undetermined function.; PDB: 3LKU_E 2WPV_G.
Probab=92.13 E-value=13 Score=37.20 Aligned_cols=101 Identities=18% Similarity=0.096 Sum_probs=61.7
Q ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh-----CCCCHHHHHHHHHHHHHcCCHH-HHHHHHHHHHHHhccCCCchh
Q 006120 124 AFDGHMAIGRVLYEHQLFKEALVSFKRACEL-----QPTDVRPHFRAGNCLYVLGRYR-EAKEEYLLALEAAETGGNQWA 197 (660)
Q Consensus 124 ~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~-----~p~~~~~~~~la~~~~~~g~~~-~A~~~~~~al~~~p~~~~~~~ 197 (660)
..+.++.-+..+.+.|++..|.++..-.++. .+.+.....+++.+......-+ +-....+++++-.........
T Consensus 9 AidLL~~Ga~~ll~~~Q~~sg~DL~~lliev~~~~~~~~~~~~~~rl~~l~~~~~~~~p~r~~fi~~ai~WS~~~~~~~G 88 (260)
T PF04190_consen 9 AIDLLYSGALILLKHGQYGSGADLALLLIEVYEKSEDPVDEESIARLIELISLFPPEEPERKKFIKAAIKWSKFGSYKFG 88 (260)
T ss_dssp HHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHTT---SHHHHHHHHHHHHHS-TT-TTHHHHHHHHHHHHHTSS-TT-
T ss_pred HHHHHHHHHHHHHHCCCcchHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCCCCcchHHHHHHHHHHHHccCCCCCC
Confidence 3455556667777777777777666555543 2344555567777777665433 455666777766622222222
Q ss_pred chHHHHHHHHHHHHHHCCCHHHHHHHHHH
Q 006120 198 YLLPQIYVNLGIALEGEGMVLSACEYYRE 226 (660)
Q Consensus 198 ~~~~~~~~~la~~~~~~g~~~~A~~~~~~ 226 (660)
.+..+..+|..+.+.|++.+|..+|-.
T Consensus 89 --dp~LH~~~a~~~~~e~~~~~A~~Hfl~ 115 (260)
T PF04190_consen 89 --DPELHHLLAEKLWKEGNYYEAERHFLL 115 (260)
T ss_dssp ---HHHHHHHHHHHHHTT-HHHHHHHHHT
T ss_pred --CHHHHHHHHHHHHhhccHHHHHHHHHh
Confidence 789999999999999999999888743
No 359
>KOG4582 consensus Uncharacterized conserved protein, contains ZZ-type Zn-finger [General function prediction only]
Probab=91.91 E-value=0.087 Score=52.99 Aligned_cols=46 Identities=24% Similarity=0.550 Sum_probs=37.1
Q ss_pred hhhcccCccccCCC-----cccccccc-ccccccccc-cccccccccccccCC
Q 006120 577 LMKLEAGDRNRHGR-----HVCSVCRY-PIIGSRFKE-MKSHFSLCSQCYSEG 622 (660)
Q Consensus 577 ~~~~~~~~~~~~~~-----~~~~~~~~-~~~~~~~~~-~~~~~~~~~~~~~~~ 622 (660)
+.-|++.=-..|-. ..|.-|.- ||||.|||= +=.++.||.+||..+
T Consensus 134 ~~~~~~~~~~~H~~~~~~~v~CD~C~~~~IvG~RyKC~~C~dYDLCe~Ce~~~ 186 (278)
T KOG4582|consen 134 VITLNPVVGEMHPNISKLSVPCDNCGKPGIVGARYKCTVCPDYDLCERCEAGN 186 (278)
T ss_pred hhhcCCCccccCCCcccccccCCCccCCccccceeeecCCCccchhHHhhcCC
Confidence 33455555567777 89999998 999999995 457899999999987
No 360
>PF13374 TPR_10: Tetratricopeptide repeat; PDB: 3CEQ_B 3EDT_H 3NF1_A.
Probab=91.85 E-value=0.37 Score=32.54 Aligned_cols=28 Identities=36% Similarity=0.560 Sum_probs=15.0
Q ss_pred HHHHHHHHHHhCCChHHHHHHHHHHHHh
Q 006120 271 AHCDLASALHAMGEDERAIEVFQKAIDL 298 (660)
Q Consensus 271 ~~~~la~~~~~~g~~~~A~~~~~~al~~ 298 (660)
++.++|.+|..+|++++|+.++++++.+
T Consensus 4 ~~~~la~~~~~~g~~~~A~~~~~~al~~ 31 (42)
T PF13374_consen 4 ALNNLANAYRAQGRYEEALELLEEALEI 31 (42)
T ss_dssp HHHHHHHHHHHCT-HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhhhhcchhhHHHHHHHHH
Confidence 4455555555555555555555555543
No 361
>KOG4014 consensus Uncharacterized conserved protein (contains TPR repeat) [Function unknown]
Probab=91.79 E-value=11 Score=35.01 Aligned_cols=185 Identities=20% Similarity=0.207 Sum_probs=114.2
Q ss_pred HHHHHHHHHHHH-HcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH-----cCCHHHHHHHHHHHHHHhccCCCchhc
Q 006120 125 FDGHMAIGRVLY-EHQLFKEALVSFKRACELQPTDVRPHFRAGNCLYV-----LGRYREAKEEYLLALEAAETGGNQWAY 198 (660)
Q Consensus 125 ~~~~~~lg~~~~-~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~-----~g~~~~A~~~~~~al~~~p~~~~~~~~ 198 (660)
+++-..||..+. -+.++++|...|+.--+-+ ..+..-+.+|..+.. .+++..|+..+..+-..+
T Consensus 34 Pe~C~lLgdYlEgi~knF~~A~kv~K~nCden-~y~kSCyKyG~y~~~GKgG~~~~l~~a~r~~~~aC~~n--------- 103 (248)
T KOG4014|consen 34 PESCQLLGDYLEGIQKNFQAAVKVFKKNCDEN-SYPKSCYKYGMYMLAGKGGDDASLSKAIRPMKIACDAN--------- 103 (248)
T ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHhccccc-CCcHHHHHhhhhhhcccCCCccCHHHHHHHHHHHhccC---------
Confidence 356666776654 3467777777777655443 245566666655442 456778888887777643
Q ss_pred hHHHHHHHHHHHHHHC-----C--CHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHH
Q 006120 199 LLPQIYVNLGIALEGE-----G--MVLSACEYYRESAILCPTHFRALKLLGSALFGVGEYRAAVKALEEAIFIKPDYADA 271 (660)
Q Consensus 199 ~~~~~~~~la~~~~~~-----g--~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~ 271 (660)
.+.+...+|.++..- + +..+|.+++.++-.+ ++..+.++|...+....+ + +....|.....
T Consensus 104 -~~~aC~~~gLl~~~g~~~r~~dpd~~Ka~~y~traCdl--~~~~aCf~LS~m~~~g~~--k-------~~t~ap~~g~p 171 (248)
T KOG4014|consen 104 -IPQACRYLGLLHWNGEKDRKADPDSEKAERYMTRACDL--EDGEACFLLSTMYMGGKE--K-------FKTNAPGEGKP 171 (248)
T ss_pred -CHHHHhhhhhhhccCcCCccCCCCcHHHHHHHHHhccC--CCchHHHHHHHHHhccch--h-------hcccCCCCCCC
Confidence 557777777766532 2 367788888887665 455666667666654322 1 11113311100
Q ss_pred HHHHHHHHHhCCChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhc---CCCHHHHHHHHHHHHccc
Q 006120 272 HCDLASALHAMGEDERAIEVFQKAIDLKPGHVDALYNLGGLYMDLG---AGETEEAKKALKEALKMT 335 (660)
Q Consensus 272 ~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~La~~~~~~~---~g~~~eA~~~~~~al~l~ 335 (660)
...+..+....+.+.|.++-.+|-+++ ++.+-.++...|.. | .++.++|..+-++|.++.
T Consensus 172 -~~~~~~~~~~kDMdka~qfa~kACel~--~~~aCAN~SrMykl-GDGv~Kde~~Aekyk~rA~e~~ 234 (248)
T KOG4014|consen 172 -LDRAELGSLSKDMDKALQFAIKACELD--IPQACANVSRMYKL-GDGVPKDEDQAEKYKDRAKEIM 234 (248)
T ss_pred -cchhhhhhhhHhHHHHHHHHHHHHhcC--ChHHHhhHHHHHHc-cCCCCccHHHHHHHHHHHHHHH
Confidence 112344455678889999888888774 45666677777653 2 246788888888888764
No 362
>PF13374 TPR_10: Tetratricopeptide repeat; PDB: 3CEQ_B 3EDT_H 3NF1_A.
Probab=91.74 E-value=0.41 Score=32.29 Aligned_cols=29 Identities=41% Similarity=0.501 Sum_probs=20.3
Q ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHHh
Q 006120 236 RALKLLGSALFGVGEYRAAVKALEEAIFI 264 (660)
Q Consensus 236 ~~~~~lg~~~~~~g~~~~A~~~~~~al~~ 264 (660)
.++.++|.+|..+|++++|+.++++++.+
T Consensus 3 ~~~~~la~~~~~~g~~~~A~~~~~~al~~ 31 (42)
T PF13374_consen 3 SALNNLANAYRAQGRYEEALELLEEALEI 31 (42)
T ss_dssp HHHHHHHHHHHHCT-HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhhhhcchhhHHHHHHHHH
Confidence 45667777777777777777777777765
No 363
>PF15015 NYD-SP12_N: Spermatogenesis-associated, N-terminal
Probab=91.64 E-value=2.5 Score=43.96 Aligned_cols=120 Identities=17% Similarity=0.120 Sum_probs=86.2
Q ss_pred HHHHHHHHHCCCHHHHHHHHHHHHHhCC--------Cc----------HHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCC
Q 006120 205 VNLGIALEGEGMVLSACEYYRESAILCP--------TH----------FRALKLLGSALFGVGEYRAAVKALEEAIFIKP 266 (660)
Q Consensus 205 ~~la~~~~~~g~~~~A~~~~~~al~~~p--------~~----------~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p 266 (660)
..-|...+++++|..|..-|+.++++.. .. .-+...|..+|..+++.+.|+....+.+.++|
T Consensus 180 L~das~~yrqk~ya~Aa~rF~taLelcskg~a~~k~~~~~~~di~~vaSfIetklv~CYL~~rkpdlALnh~hrsI~lnP 259 (569)
T PF15015_consen 180 LKDASSCYRQKKYAVAAGRFRTALELCSKGAALSKPFKASAEDISSVASFIETKLVTCYLRMRKPDLALNHSHRSINLNP 259 (569)
T ss_pred HHHHHHHHhhHHHHHHHHHHHHHHHHHhhhhhccCCCCCChhhHHHHHHHHHHHHHHhhhhcCCCchHHHHHhhhhhcCc
Confidence 3345566677777777777777776521 11 11345688999999999999999999999999
Q ss_pred CCHHHHHHHHHHHHhCCChHHHHHHHHHHHHh---CCCCHHHHHHHHHHHHHhcCCCHHHHHHH
Q 006120 267 DYADAHCDLASALHAMGEDERAIEVFQKAIDL---KPGHVDALYNLGGLYMDLGAGETEEAKKA 327 (660)
Q Consensus 267 ~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~---~p~~~~a~~~La~~~~~~~~g~~~eA~~~ 327 (660)
.....+...|.++..+.+|.+|...+--+.-+ ......-...+..+|... -.++|+..
T Consensus 260 ~~frnHLrqAavfR~LeRy~eAarSamia~ymywl~g~~~q~~S~lIklyWqa---miEeAiTr 320 (569)
T PF15015_consen 260 SYFRNHLRQAAVFRRLERYSEAARSAMIADYMYWLSGGSEQRISKLIKLYWQA---MIEEAITR 320 (569)
T ss_pred chhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCchHhHHHHHHHHHHH---HHHHHHhc
Confidence 99999999999999999999998776655433 343444455566666654 44555443
No 364
>KOG3807 consensus Predicted membrane protein ST7 (tumor suppressor in humans) [General function prediction only]
Probab=91.59 E-value=12 Score=38.01 Aligned_cols=152 Identities=14% Similarity=0.085 Sum_probs=88.7
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHhccCCCchhchHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCcHHHHH
Q 006120 160 RPHFRAGNCLYVLGRYREAKEEYLLALEAAETGGNQWAYLLPQIYVNLGIALEGEGMVLSACEYYRESAILCPTHFRALK 239 (660)
Q Consensus 160 ~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~ 239 (660)
..-+.+-....+..+..+-++....+++++|. -+.+|..++. ....-..+|...++++++.... .+
T Consensus 185 r~e~eIMQ~AWRERnp~~RI~~A~~ALeIN~e--------CA~AyvLLAE--EEa~Ti~~AE~l~k~ALka~e~----~y 250 (556)
T KOG3807|consen 185 RPEDEIMQKAWRERNPPARIKAAYQALEINNE--------CATAYVLLAE--EEATTIVDAERLFKQALKAGET----IY 250 (556)
T ss_pred ChHHHHHHHHHHhcCcHHHHHHHHHHHhcCch--------hhhHHHhhhh--hhhhhHHHHHHHHHHHHHHHHH----HH
Confidence 33445556666777777788888888888887 6677766664 2334467788888888765321 22
Q ss_pred HHHHHHHHCCCHHHHHHHHHHHHHhCCCCHH--HHHHHHHHHHhCCChHHHHHHHHHHHHhCCCC--HHHHHHHHHHHHH
Q 006120 240 LLGSALFGVGEYRAAVKALEEAIFIKPDYAD--AHCDLASALHAMGEDERAIEVFQKAIDLKPGH--VDALYNLGGLYMD 315 (660)
Q Consensus 240 ~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~--~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~--~~a~~~La~~~~~ 315 (660)
+........|...+|. .+ ...+.. +-..|+.|..++|+..+|++.++...+-.|-. ...+-+|...+.+
T Consensus 251 r~sqq~qh~~~~~da~------~r-RDtnvl~YIKRRLAMCARklGrlrEA~K~~RDL~ke~pl~t~lniheNLiEalLE 323 (556)
T KOG3807|consen 251 RQSQQCQHQSPQHEAQ------LR-RDTNVLVYIKRRLAMCARKLGRLREAVKIMRDLMKEFPLLTMLNIHENLLEALLE 323 (556)
T ss_pred hhHHHHhhhccchhhh------hh-cccchhhHHHHHHHHHHHHhhhHHHHHHHHHHHhhhccHHHHHHHHHHHHHHHHH
Confidence 2222222222222221 11 122233 33468888889999999999988887766632 2345566666666
Q ss_pred hcCCCHHHHHHHHHHHHcc
Q 006120 316 LGAGETEEAKKALKEALKM 334 (660)
Q Consensus 316 ~~~g~~~eA~~~~~~al~l 334 (660)
+ .-|.+-...+.+.=++
T Consensus 324 ~--QAYADvqavLakYDdi 340 (556)
T KOG3807|consen 324 L--QAYADVQAVLAKYDDI 340 (556)
T ss_pred H--HHHHHHHHHHHhhccc
Confidence 5 4444444444443333
No 365
>PF10579 Rapsyn_N: Rapsyn N-terminal myristoylation and linker region; InterPro: IPR019568 Neuromuscular junction formation relies upon the clustering of acetylcholine receptors and other proteins in the muscle membrane. Rapsyn is a peripheral membrane protein that is selectively concentrated at the neuromuscular junction and is essential for the formation of synaptic acetylcholine receptor aggregates. Acetylcholine receptors fail to aggregate beneath nerve terminals in mice where rapsyn has been knocked out. The N-terminal six amino acids of rapsyn are its myristoylation site, and myristoylation is necessary for the targeting of the protein to the membrane []. ; GO: 0008270 zinc ion binding, 0033130 acetylcholine receptor binding, 0007268 synaptic transmission, 0005856 cytoskeleton, 0030054 cell junction, 0045211 postsynaptic membrane
Probab=91.54 E-value=1.8 Score=34.10 Aligned_cols=55 Identities=15% Similarity=0.047 Sum_probs=28.6
Q ss_pred HHHHHHHHHHHHHHHHHHhhccCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Q 006120 98 THDYAVFVKELGVLRNRADGARSREEAFDGHMAIGRVLYEHQLFKEALVSFKRAC 152 (660)
Q Consensus 98 ~~~~g~~~~Al~~l~~a~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al 152 (660)
+++..+..+|+..++++++...+.+..+.++-.+..+|...|+|.+.+.+..+-+
T Consensus 16 LY~~~~~~~Al~~W~~aL~k~~~~~~rf~~lG~l~qA~~e~Gkyr~~L~fA~~Q~ 70 (80)
T PF10579_consen 16 LYHQNETQQALQKWRKALEKITDREDRFRVLGYLIQAHMEWGKYREMLAFALQQL 70 (80)
T ss_pred HhccchHHHHHHHHHHHHhhcCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444455555555555555555555555555555555555555555555444333
No 366
>KOG0890 consensus Protein kinase of the PI-3 kinase family involved in mitotic growth, DNA repair and meiotic recombination [Signal transduction mechanisms; Chromatin structure and dynamics; Replication, recombination and repair; Cell cycle control, cell division, chromosome partitioning]
Probab=91.50 E-value=21 Score=45.53 Aligned_cols=64 Identities=17% Similarity=0.183 Sum_probs=58.2
Q ss_pred CHHHHHHHHHHHHhCCChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHccc
Q 006120 268 YADAHCDLASALHAMGEDERAIEVFQKAIDLKPGHVDALYNLGGLYMDLGAGETEEAKKALKEALKMT 335 (660)
Q Consensus 268 ~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~La~~~~~~~~g~~~eA~~~~~~al~l~ 335 (660)
.++.|...|++....|+++.|..++-+|.+.. -+.+....|..+... |+-..|+..+++.++.+
T Consensus 1669 ~ge~wLqsAriaR~aG~~q~A~nall~A~e~r--~~~i~~E~AK~lW~~--gd~~~Al~~Lq~~l~~~ 1732 (2382)
T KOG0890|consen 1669 LGECWLQSARIARLAGHLQRAQNALLNAKESR--LPEIVLERAKLLWQT--GDELNALSVLQEILSKN 1732 (2382)
T ss_pred hHHHHHHHHHHHHhcccHHHHHHHHHhhhhcc--cchHHHHHHHHHHhh--ccHHHHHHHHHHHHHhh
Confidence 47899999999999999999999999998877 478899999999998 99999999999999664
No 367
>COG5159 RPN6 26S proteasome regulatory complex component [Posttranslational modification, protein turnover, chaperones]
Probab=91.46 E-value=12 Score=37.14 Aligned_cols=95 Identities=20% Similarity=0.170 Sum_probs=59.0
Q ss_pred HHHHHHHHHCCCHHHHHHHHHHHHHh------CCCCHHHHHHHHHHHHhCCChHHHHHHHHHHHHhC-----CCCHHHHH
Q 006120 239 KLLGSALFGVGEYRAAVKALEEAIFI------KPDYADAHCDLASALHAMGEDERAIEVFQKAIDLK-----PGHVDALY 307 (660)
Q Consensus 239 ~~lg~~~~~~g~~~~A~~~~~~al~~------~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~-----p~~~~a~~ 307 (660)
..+..++++.|.|.+|+......+.- .++-...+..-..+|.+..+..++...+..|-... |....+-.
T Consensus 129 ~Kli~l~y~~~~YsdalalIn~ll~ElKk~DDK~~Li~vhllESKvyh~irnv~KskaSLTaArt~Ans~YCPpqlqa~l 208 (421)
T COG5159 129 CKLIYLLYKTGKYSDALALINPLLHELKKYDDKINLITVHLLESKVYHEIRNVSKSKASLTAARTLANSAYCPPQLQAQL 208 (421)
T ss_pred HHHHHHHHhcccHHHHHHHHHHHHHHHHhhcCccceeehhhhhHHHHHHHHhhhhhhhHHHHHHHHhhccCCCHHHHHHH
Confidence 45677788888888888877665532 24445667777778888888877777776665442 32222211
Q ss_pred --HHHHHHHHhcCCCHHHHHHHHHHHHccc
Q 006120 308 --NLGGLYMDLGAGETEEAKKALKEALKMT 335 (660)
Q Consensus 308 --~La~~~~~~~~g~~~eA~~~~~~al~l~ 335 (660)
.-|.....- .+|.-|..+|-++++-.
T Consensus 209 DL~sGIlhcdd--~dyktA~SYF~Ea~Egf 236 (421)
T COG5159 209 DLLSGILHCDD--RDYKTASSYFIEALEGF 236 (421)
T ss_pred HHhccceeecc--ccchhHHHHHHHHHhcc
Confidence 112233333 67888888888887654
No 368
>KOG3364 consensus Membrane protein involved in organellar division [Cell wall/membrane/envelope biogenesis]
Probab=91.34 E-value=3.9 Score=35.90 Aligned_cols=72 Identities=14% Similarity=-0.008 Sum_probs=34.7
Q ss_pred HHHHHHHHHHHHcC---CHHHHHHHHHHHHH-HhccCCCchhchHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCcH
Q 006120 160 RPHFRAGNCLYVLG---RYREAKEEYLLALE-AAETGGNQWAYLLPQIYVNLGIALEGEGMVLSACEYYRESAILCPTHF 235 (660)
Q Consensus 160 ~~~~~la~~~~~~g---~~~~A~~~~~~al~-~~p~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~ 235 (660)
...+++|.++.... +..+.+..++..++ -.|.. .....+.|+..+.+.++|++++.+.+..++..|++.
T Consensus 33 ~s~f~lAwaLV~S~~~~dv~~GI~iLe~l~~~~~~~~-------rRe~lyYLAvg~yRlkeY~~s~~yvd~ll~~e~~n~ 105 (149)
T KOG3364|consen 33 QSQFNLAWALVRSRDTEDVQEGIVILEDLLKSAHPER-------RRECLYYLAVGHYRLKEYSKSLRYVDALLETEPNNR 105 (149)
T ss_pred HHHHHHHHHHHcccchHHHHHhHHHHHHHhhhcCccc-------chhhhhhhHHHHHHHhhHHHHHHHHHHHHhhCCCcH
Confidence 44445555544432 23344555555554 11111 234444555555555555555555555555555554
Q ss_pred HHH
Q 006120 236 RAL 238 (660)
Q Consensus 236 ~~~ 238 (660)
++.
T Consensus 106 Qa~ 108 (149)
T KOG3364|consen 106 QAL 108 (149)
T ss_pred HHH
Confidence 443
No 369
>KOG1538 consensus Uncharacterized conserved protein WDR10, contains WD40 repeats [General function prediction only]
Probab=91.21 E-value=11 Score=41.48 Aligned_cols=52 Identities=19% Similarity=0.156 Sum_probs=36.0
Q ss_pred HHHHhCCChHHHHHHHHHHHHhCCCC-HHHHHHHHHHHHHhcCCCHHHHHHHHHHHHcc
Q 006120 277 SALHAMGEDERAIEVFQKAIDLKPGH-VDALYNLGGLYMDLGAGETEEAKKALKEALKM 334 (660)
Q Consensus 277 ~~~~~~g~~~~A~~~~~~al~~~p~~-~~a~~~La~~~~~~~~g~~~eA~~~~~~al~l 334 (660)
.+..+.+++.+|....++ .|.. ++.|+..|+-+.+. .+++||.+.|.+|=+.
T Consensus 781 qlHve~~~W~eAFalAe~----hPe~~~dVy~pyaqwLAE~--DrFeEAqkAfhkAGr~ 833 (1081)
T KOG1538|consen 781 QLHVETQRWDEAFALAEK----HPEFKDDVYMPYAQWLAEN--DRFEEAQKAFHKAGRQ 833 (1081)
T ss_pred hheeecccchHhHhhhhh----CccccccccchHHHHhhhh--hhHHHHHHHHHHhcch
Confidence 344456667766655444 2333 45788888888888 8999999999888543
No 370
>COG5107 RNA14 Pre-mRNA 3'-end processing (cleavage and polyadenylation) factor [RNA processing and modification]
Probab=90.44 E-value=27 Score=37.11 Aligned_cols=210 Identities=10% Similarity=0.032 Sum_probs=138.3
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHh--------ccC-----
Q 006120 126 DGHMAIGRVLYEHQLFKEALVSFKRACELQPTDVRPHFRAGNCLYVLGRYREAKEEYLLALEAA--------ETG----- 192 (660)
Q Consensus 126 ~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~--------p~~----- 192 (660)
+.|+.-.......++-+.|+...++++...|. ....++.+|....+-++-..+|+++.+.- .+.
T Consensus 303 evw~dys~Y~~~isd~q~al~tv~rg~~~sps---L~~~lse~yel~nd~e~v~~~fdk~~q~L~r~ys~~~s~~~s~~D 379 (660)
T COG5107 303 EVWFDYSEYLIGISDKQKALKTVERGIEMSPS---LTMFLSEYYELVNDEEAVYGCFDKCTQDLKRKYSMGESESASKVD 379 (660)
T ss_pred HHHHHHHHHHhhccHHHHHHHHHHhcccCCCc---hheeHHHHHhhcccHHHHhhhHHHHHHHHHHHHhhhhhhhhcccc
Confidence 67777777778888889998888888776665 56677777777777666666666554321 000
Q ss_pred CCc--hhch-------HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCcHHHHHHHHH-HHHHCCCHHHHHHHHHHHH
Q 006120 193 GNQ--WAYL-------LPQIYVNLGIALEGEGMVLSACEYYRESAILCPTHFRALKLLGS-ALFGVGEYRAAVKALEEAI 262 (660)
Q Consensus 193 ~~~--~~~~-------~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~-~~~~~g~~~~A~~~~~~al 262 (660)
++. ...+ ...++..+-....+..-.+.|...|-++-+..-....++..-|. -+...|++.-|...|+-.+
T Consensus 380 ~N~e~~~Ell~kr~~k~t~v~C~~~N~v~r~~Gl~aaR~~F~k~rk~~~~~h~vyi~~A~~E~~~~~d~~ta~~ifelGl 459 (660)
T COG5107 380 NNFEYSKELLLKRINKLTFVFCVHLNYVLRKRGLEAARKLFIKLRKEGIVGHHVYIYCAFIEYYATGDRATAYNIFELGL 459 (660)
T ss_pred CCccccHHHHHHHHhhhhhHHHHHHHHHHHHhhHHHHHHHHHHHhccCCCCcceeeeHHHHHHHhcCCcchHHHHHHHHH
Confidence 000 0000 11223333333444555677777777776554233334433333 3456799999999999999
Q ss_pred HhCCCCHHHHHHHHHHHHhCCChHHHHHHHHHHHHhCCCC--HHHHHHHHHHHHHhcCCCHHHHHHHHHHHHcccCChhH
Q 006120 263 FIKPDYADAHCDLASALHAMGEDERAIEVFQKAIDLKPGH--VDALYNLGGLYMDLGAGETEEAKKALKEALKMTNRVEL 340 (660)
Q Consensus 263 ~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~--~~a~~~La~~~~~~~~g~~~eA~~~~~~al~l~p~~~~ 340 (660)
...|+.+..-...-..+...++-+.|...|++++..-... ...|-.+...-..- |+...+...=++..++-|+...
T Consensus 460 ~~f~d~~~y~~kyl~fLi~inde~naraLFetsv~r~~~~q~k~iy~kmi~YEs~~--G~lN~v~sLe~rf~e~~pQen~ 537 (660)
T COG5107 460 LKFPDSTLYKEKYLLFLIRINDEENARALFETSVERLEKTQLKRIYDKMIEYESMV--GSLNNVYSLEERFRELVPQENL 537 (660)
T ss_pred HhCCCchHHHHHHHHHHHHhCcHHHHHHHHHHhHHHHHHhhhhHHHHHHHHHHHhh--cchHHHHhHHHHHHHHcCcHhH
Confidence 9999998877777788889999999999999888653332 33444444444444 8888888888888888887544
No 371
>KOG3783 consensus Uncharacterized conserved protein [Function unknown]
Probab=90.05 E-value=32 Score=37.43 Aligned_cols=206 Identities=14% Similarity=0.007 Sum_probs=119.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhccCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHH-HHHH---
Q 006120 95 EESTHDYAVFVKELGVLRNRADGARSREEAFDGHMAIGRVLYEHQLFKEALVSFKRACELQPTDVRPHFRAG-NCLY--- 170 (660)
Q Consensus 95 ~~~~~~~g~~~~Al~~l~~a~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la-~~~~--- 170 (660)
+.+..-.|+.+.|+...+..++ ..-..-..-.++.+|.++..+.+|..|...+....+...-.--.+..++ -|+.
T Consensus 274 ar~l~~~g~~eaa~~~~~~~v~-~~~kQ~~~l~~fE~aw~~v~~~~~~~aad~~~~L~desdWS~a~Y~Yfa~cc~l~~~ 352 (546)
T KOG3783|consen 274 ARILSIKGNSEAAIDMESLSIP-IRMKQVKSLMVFERAWLSVGQHQYSRAADSFDLLRDESDWSHAFYTYFAGCCLLQNW 352 (546)
T ss_pred HHHHHHcccHHHHHHHHHhccc-HHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHhhhhhhHHHHHHHHHHHHhccH
Confidence 4455556666666776666665 2222222345678888888888999999999888877654434444444 3332
Q ss_pred -----HcCCHHHHHHHHHHHHHH---hccCCCchhc------------------hHHHHHHHHHHHHHHC--CCHHHHHH
Q 006120 171 -----VLGRYREAKEEYLLALEA---AETGGNQWAY------------------LLPQIYVNLGIALEGE--GMVLSACE 222 (660)
Q Consensus 171 -----~~g~~~~A~~~~~~al~~---~p~~~~~~~~------------------~~~~~~~~la~~~~~~--g~~~~A~~ 222 (660)
..|+-++|..+.+...++ .|.+.+...- ..+..++.++..+..- ....+..
T Consensus 353 ~~~q~~~~ne~~a~~~~k~~~~l~~~a~K~~P~E~f~~RKverf~~~~~~~~~~~la~P~~El~Y~Wngf~~~s~~~l~- 431 (546)
T KOG3783|consen 353 EVNQGAGGNEEKAQLYFKVGEELLANAGKNLPLEKFIVRKVERFVKRGPLNASILLASPYYELAYFWNGFSRMSKNELE- 431 (546)
T ss_pred HHHHhcccchhHHHHHHHHHHHHHHhccccCchhHHHHHHHHHHhccccccccccccchHHHHHHHHhhcccCChhhHH-
Confidence 234555555555444333 2221110000 0000122233222211 1112222
Q ss_pred HHHHHHH---h-CCCc-HHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC---CC----CHHHHHHHHHHHHhCCC-hHHHH
Q 006120 223 YYRESAI---L-CPTH-FRALKLLGSALFGVGEYRAAVKALEEAIFIK---PD----YADAHCDLASALHAMGE-DERAI 289 (660)
Q Consensus 223 ~~~~al~---~-~p~~-~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~---p~----~~~~~~~la~~~~~~g~-~~~A~ 289 (660)
-++..++ . ++++ .--+..+|.++..+|+...|..+|...++.. .. .|.+++.+|.++..++. ..++.
T Consensus 432 k~~~~~~~~~~~d~Dd~~lk~lL~g~~lR~Lg~~~~a~~~f~i~~~~e~~~~~d~w~~PfA~YElA~l~~~~~g~~~e~~ 511 (546)
T KOG3783|consen 432 KMRAELENPKIDDSDDEGLKYLLKGVILRNLGDSEVAPKCFKIQVEKESKRTEDLWAVPFALYELALLYWDLGGGLKEAR 511 (546)
T ss_pred HHHHHHhccCCCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhhccccccccHHHHHHHHHHHhcccChHHHH
Confidence 1111111 1 2222 2245678999999999999999999888542 11 27789999999999999 99999
Q ss_pred HHHHHHHHhCCCC
Q 006120 290 EVFQKAIDLKPGH 302 (660)
Q Consensus 290 ~~~~~al~~~p~~ 302 (660)
.++.+|-+...++
T Consensus 512 ~~L~kAr~~~~dY 524 (546)
T KOG3783|consen 512 ALLLKAREYASDY 524 (546)
T ss_pred HHHHHHHhhcccc
Confidence 9999998876553
No 372
>COG5191 Uncharacterized conserved protein, contains HAT (Half-A-TPR) repeat [General function prediction only]
Probab=89.36 E-value=0.68 Score=46.13 Aligned_cols=87 Identities=11% Similarity=0.040 Sum_probs=71.8
Q ss_pred HHHHHHHhCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHH-HHHHHHhCCChHHHHHHHHHHHHhCCC
Q 006120 223 YYRESAILCPTHFRALKLLGSALFGVGEYRAAVKALEEAIFIKPDYADAHCD-LASALHAMGEDERAIEVFQKAIDLKPG 301 (660)
Q Consensus 223 ~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~-la~~~~~~g~~~~A~~~~~~al~~~p~ 301 (660)
.|.++....|+++..|...+....+.|-+.+--..|.+++..+|.+++.|.. -+.-+...++.+.+...+.+++.++|+
T Consensus 95 ~~~R~tnkff~D~k~w~~y~~Y~~k~k~y~~~~nI~~~~l~khP~nvdlWI~~c~~e~~~~ani~s~Ra~f~~glR~N~~ 174 (435)
T COG5191 95 ELYRSTNKFFNDPKIWSQYAAYVIKKKMYGEMKNIFAECLTKHPLNVDLWIYCCAFELFEIANIESSRAMFLKGLRMNSR 174 (435)
T ss_pred eeehhhhcCCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCceeeeeeccchhhhhccHHHHHHHHHhhhccCCC
Confidence 4455556678888999988888888888888899999999999999998877 445667788999999999999999999
Q ss_pred CHHHHHHH
Q 006120 302 HVDALYNL 309 (660)
Q Consensus 302 ~~~a~~~L 309 (660)
++..|...
T Consensus 175 ~p~iw~ey 182 (435)
T COG5191 175 SPRIWIEY 182 (435)
T ss_pred CchHHHHH
Confidence 88877643
No 373
>KOG3364 consensus Membrane protein involved in organellar division [Cell wall/membrane/envelope biogenesis]
Probab=89.18 E-value=3.5 Score=36.16 Aligned_cols=63 Identities=11% Similarity=0.084 Sum_probs=38.2
Q ss_pred HHHHHHHHHHHHHHHHhhccCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHH
Q 006120 100 DYAVFVKELGVLRNRADGARSREEAFDGHMAIGRVLYEHQLFKEALVSFKRACELQPTDVRPHF 163 (660)
Q Consensus 100 ~~g~~~~Al~~l~~a~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~ 163 (660)
+..+.++.+..+++.++ ...+...-+..+.++..+++.++|+.++.+....++..|++.++..
T Consensus 47 ~~~dv~~GI~iLe~l~~-~~~~~~rRe~lyYLAvg~yRlkeY~~s~~yvd~ll~~e~~n~Qa~~ 109 (149)
T KOG3364|consen 47 DTEDVQEGIVILEDLLK-SAHPERRRECLYYLAVGHYRLKEYSKSLRYVDALLETEPNNRQALE 109 (149)
T ss_pred chHHHHHhHHHHHHHhh-hcCcccchhhhhhhHHHHHHHhhHHHHHHHHHHHHhhCCCcHHHHH
Confidence 34455666666666665 2333333455666677777777777777777777777766655443
No 374
>KOG0529 consensus Protein geranylgeranyltransferase type II, alpha subunit [Posttranslational modification, protein turnover, chaperones]
Probab=89.14 E-value=24 Score=37.12 Aligned_cols=28 Identities=14% Similarity=-0.079 Sum_probs=18.0
Q ss_pred HHHHHHHHHHHHhCCCCHHHHHHHHHHH
Q 006120 142 KEALVSFKRACELQPTDVRPHFRAGNCL 169 (660)
Q Consensus 142 ~~A~~~~~~al~~~p~~~~~~~~la~~~ 169 (660)
.++++.=.+.+..+|+...+|+..-.++
T Consensus 46 ~e~l~lt~~ll~~npe~~t~wN~Rr~~~ 73 (421)
T KOG0529|consen 46 EEHLELTSELLEKNPEFYTVWNYRRLII 73 (421)
T ss_pred hHHHHHHHHHHhhCchhhhhhhhHHHHH
Confidence 4566666777777887776666554443
No 375
>PF15015 NYD-SP12_N: Spermatogenesis-associated, N-terminal
Probab=88.73 E-value=2.6 Score=43.92 Aligned_cols=94 Identities=12% Similarity=0.031 Sum_probs=74.5
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhC--------CC-----C-----HHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 006120 126 DGHMAIGRVLYEHQLFKEALVSFKRACELQ--------PT-----D-----VRPHFRAGNCLYVLGRYREAKEEYLLALE 187 (660)
Q Consensus 126 ~~~~~lg~~~~~~g~~~~A~~~~~~al~~~--------p~-----~-----~~~~~~la~~~~~~g~~~~A~~~~~~al~ 187 (660)
.+-..-|...+++++|..|.--|..++++. |. + ..+-..+..||+.+++.+-|+....+.+.
T Consensus 177 ~vAL~das~~yrqk~ya~Aa~rF~taLelcskg~a~~k~~~~~~~di~~vaSfIetklv~CYL~~rkpdlALnh~hrsI~ 256 (569)
T PF15015_consen 177 QVALKDASSCYRQKKYAVAAGRFRTALELCSKGAALSKPFKASAEDISSVASFIETKLVTCYLRMRKPDLALNHSHRSIN 256 (569)
T ss_pred HHHHHHHHHHHhhHHHHHHHHHHHHHHHHHhhhhhccCCCCCChhhHHHHHHHHHHHHHHhhhhcCCCchHHHHHhhhhh
Confidence 333445677788888888888888888763 11 1 12345788999999999999999999999
Q ss_pred HhccCCCchhchHHHHHHHHHHHHHHCCCHHHHHHHHHHH
Q 006120 188 AAETGGNQWAYLLPQIYVNLGIALEGEGMVLSACEYYRES 227 (660)
Q Consensus 188 ~~p~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a 227 (660)
++|. ...-++..|.++..+.+|.+|...+--+
T Consensus 257 lnP~--------~frnHLrqAavfR~LeRy~eAarSamia 288 (569)
T PF15015_consen 257 LNPS--------YFRNHLRQAAVFRRLERYSEAARSAMIA 288 (569)
T ss_pred cCcc--------hhhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 9999 7888889999999999999987765443
No 376
>PRK13184 pknD serine/threonine-protein kinase; Reviewed
Probab=87.52 E-value=17 Score=43.15 Aligned_cols=131 Identities=18% Similarity=0.136 Sum_probs=95.9
Q ss_pred HHHHHHHHHCCCHHHHHHHHHHHHHhCCCc---HHHHHHHHHHHHHC----C---CHHHHHHHHHHHHHhCCCCHHHHHH
Q 006120 205 VNLGIALEGEGMVLSACEYYRESAILCPTH---FRALKLLGSALFGV----G---EYRAAVKALEEAIFIKPDYADAHCD 274 (660)
Q Consensus 205 ~~la~~~~~~g~~~~A~~~~~~al~~~p~~---~~~~~~lg~~~~~~----g---~~~~A~~~~~~al~~~p~~~~~~~~ 274 (660)
.....++...+.|+.|+..|++.....|.. .++.+..|..+..+ | .+.+|+..|++.- -.|.-+--|..
T Consensus 479 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~ 557 (932)
T PRK13184 479 LAVPDAFLAEKLYDQALIFYRRIRESFPGRKEGYEAQFRLGITLLEKASEQGDPRDFTQALSEFSYLH-GGVGAPLEYLG 557 (932)
T ss_pred ccCcHHHHhhHHHHHHHHHHHHHhhcCCCcccchHHHHHhhHHHHHHHHhcCChHHHHHHHHHHHHhc-CCCCCchHHHh
Confidence 344567778889999999999999988876 45777778777643 3 3556666665532 24666778888
Q ss_pred HHHHHHhCCChHHHHHHHHHHHHhCCCCHHH-------HHHHHHHHHHhcCCCHHHHHHHHHHHHcccCChhH
Q 006120 275 LASALHAMGEDERAIEVFQKAIDLKPGHVDA-------LYNLGGLYMDLGAGETEEAKKALKEALKMTNRVEL 340 (660)
Q Consensus 275 la~~~~~~g~~~~A~~~~~~al~~~p~~~~a-------~~~La~~~~~~~~g~~~eA~~~~~~al~l~p~~~~ 340 (660)
.|.+|..+|++++-++++.-|++..|+++.. .+.|-.+.. .+-..|..+.--++...|..-.
T Consensus 558 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~ 626 (932)
T PRK13184 558 KALVYQRLGEYNEEIKSLLLALKRYSQHPEISRLRDHLVYRLHESLY----KHRREALVFMLLALWIAPEKIS 626 (932)
T ss_pred HHHHHHHhhhHHHHHHHHHHHHHhcCCCCccHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHhCccccc
Confidence 9999999999999999999999999888653 233333333 3456777888888888887443
No 377
>COG2912 Uncharacterized conserved protein [Function unknown]
Probab=87.38 E-value=8.5 Score=38.19 Aligned_cols=68 Identities=22% Similarity=0.072 Sum_probs=33.8
Q ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHH
Q 006120 203 IYVNLGIALEGEGMVLSACEYYRESAILCPTHFRALKLLGSALFGVGEYRAAVKALEEAIFIKPDYAD 270 (660)
Q Consensus 203 ~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~ 270 (660)
...++=..+...++++.|..+.++.+.++|.++.-+.-.|.+|.+.|.+.-|+..+...++..|+++.
T Consensus 183 ll~~lk~~~~~e~~~~~al~~~~r~l~l~P~dp~eirDrGliY~ql~c~~vAl~dl~~~~~~~P~~~~ 250 (269)
T COG2912 183 LLRNLKAALLRELQWELALRVAERLLDLNPEDPYEIRDRGLIYAQLGCYHVALEDLSYFVEHCPDDPI 250 (269)
T ss_pred HHHHHHHHHHHhhchHHHHHHHHHHHhhCCCChhhccCcHHHHHhcCCchhhHHHHHHHHHhCCCchH
Confidence 33333444444555555555555555555555555555555555555555555555555555554443
No 378
>PF04053 Coatomer_WDAD: Coatomer WD associated region ; InterPro: IPR006692 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the WD-associated region found in coatomer subunits alpha, beta and beta' subunits. The alpha-subunit (RET1P) of the coatomer complex in Saccharomyces cerevisiae (Baker's yeast), participates in membrane transport between the endoplasmic reticulum and Golgi apparatus. The protein contains six WD-40 repeat motifs in its N-terminal region []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 3MKQ_B.
Probab=87.27 E-value=5.7 Score=43.06 Aligned_cols=45 Identities=22% Similarity=0.149 Sum_probs=24.1
Q ss_pred HHCCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHH
Q 006120 212 EGEGMVLSACEYYRESAILCPTHFRALKLLGSALFGVGEYRAAVKALEEA 261 (660)
Q Consensus 212 ~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~a 261 (660)
.+.|+.+.|.+..++ .++...|..||.....+|+++-|..+|+++
T Consensus 329 l~lg~L~~A~~~a~~-----~~~~~~W~~Lg~~AL~~g~~~lAe~c~~k~ 373 (443)
T PF04053_consen 329 LQLGNLDIALEIAKE-----LDDPEKWKQLGDEALRQGNIELAEECYQKA 373 (443)
T ss_dssp HHCT-HHHHHHHCCC-----CSTHHHHHHHHHHHHHTTBHHHHHHHHHHC
T ss_pred HhcCCHHHHHHHHHh-----cCcHHHHHHHHHHHHHcCCHHHHHHHHHhh
Confidence 455555555544322 234556666666666666666666666553
No 379
>PF04053 Coatomer_WDAD: Coatomer WD associated region ; InterPro: IPR006692 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the WD-associated region found in coatomer subunits alpha, beta and beta' subunits. The alpha-subunit (RET1P) of the coatomer complex in Saccharomyces cerevisiae (Baker's yeast), participates in membrane transport between the endoplasmic reticulum and Golgi apparatus. The protein contains six WD-40 repeat motifs in its N-terminal region []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 3MKQ_B.
Probab=86.95 E-value=7.9 Score=41.95 Aligned_cols=131 Identities=22% Similarity=0.137 Sum_probs=78.7
Q ss_pred HHHHcCCHHHHHHHHHHHHHHhccCCCchhchHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHH
Q 006120 168 CLYVLGRYREAKEEYLLALEAAETGGNQWAYLLPQIYVNLGIALEGEGMVLSACEYYRESAILCPTHFRALKLLGSALFG 247 (660)
Q Consensus 168 ~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~ 247 (660)
.....++++++..... +-++.|.. .......++..+.++|-++.|+... .+++..+. +..+
T Consensus 270 ~av~~~d~~~v~~~i~-~~~ll~~i-------~~~~~~~i~~fL~~~G~~e~AL~~~--------~D~~~rFe---LAl~ 330 (443)
T PF04053_consen 270 TAVLRGDFEEVLRMIA-ASNLLPNI-------PKDQGQSIARFLEKKGYPELALQFV--------TDPDHRFE---LALQ 330 (443)
T ss_dssp HHHHTT-HHH-----H-HHHTGGG---------HHHHHHHHHHHHHTT-HHHHHHHS--------S-HHHHHH---HHHH
T ss_pred HHHHcCChhhhhhhhh-hhhhcccC-------ChhHHHHHHHHHHHCCCHHHHHhhc--------CChHHHhH---HHHh
Confidence 3455778888766663 12233432 2244667778888999988887754 33455554 4467
Q ss_pred CCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhCCChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCCCHHHHHHH
Q 006120 248 VGEYRAAVKALEEAIFIKPDYADAHCDLASALHAMGEDERAIEVFQKAIDLKPGHVDALYNLGGLYMDLGAGETEEAKKA 327 (660)
Q Consensus 248 ~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~La~~~~~~~~g~~~eA~~~ 327 (660)
.|+.+.|.+..++ .++...|..||...+.+|+++-|+.+|+++-. +..|..+|... |+.+.=.+.
T Consensus 331 lg~L~~A~~~a~~-----~~~~~~W~~Lg~~AL~~g~~~lAe~c~~k~~d--------~~~L~lLy~~~--g~~~~L~kl 395 (443)
T PF04053_consen 331 LGNLDIALEIAKE-----LDDPEKWKQLGDEALRQGNIELAEECYQKAKD--------FSGLLLLYSST--GDREKLSKL 395 (443)
T ss_dssp CT-HHHHHHHCCC-----CSTHHHHHHHHHHHHHTTBHHHHHHHHHHCT---------HHHHHHHHHHC--T-HHHHHHH
T ss_pred cCCHHHHHHHHHh-----cCcHHHHHHHHHHHHHcCCHHHHHHHHHhhcC--------ccccHHHHHHh--CCHHHHHHH
Confidence 8999988876543 45788999999999999999999999998632 34444555555 555444444
Q ss_pred HHHHH
Q 006120 328 LKEAL 332 (660)
Q Consensus 328 ~~~al 332 (660)
.+.+.
T Consensus 396 ~~~a~ 400 (443)
T PF04053_consen 396 AKIAE 400 (443)
T ss_dssp HHHHH
T ss_pred HHHHH
Confidence 44433
No 380
>COG2912 Uncharacterized conserved protein [Function unknown]
Probab=86.94 E-value=4.8 Score=39.88 Aligned_cols=70 Identities=19% Similarity=0.158 Sum_probs=45.0
Q ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhCCChHHHHHHHHHHHHhCCCCHHHHH
Q 006120 238 LKLLGSALFGVGEYRAAVKALEEAIFIKPDYADAHCDLASALHAMGEDERAIEVFQKAIDLKPGHVDALY 307 (660)
Q Consensus 238 ~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~ 307 (660)
..++=..+...++++.|....++.+.++|.++.-+...|.+|.++|.+.-|+..++..++..|+.+.+-.
T Consensus 184 l~~lk~~~~~e~~~~~al~~~~r~l~l~P~dp~eirDrGliY~ql~c~~vAl~dl~~~~~~~P~~~~a~~ 253 (269)
T COG2912 184 LRNLKAALLRELQWELALRVAERLLDLNPEDPYEIRDRGLIYAQLGCYHVALEDLSYFVEHCPDDPIAEM 253 (269)
T ss_pred HHHHHHHHHHhhchHHHHHHHHHHHhhCCCChhhccCcHHHHHhcCCchhhHHHHHHHHHhCCCchHHHH
Confidence 3344455566666666666666666666666666666666666666666666666666666666655443
No 381
>COG3629 DnrI DNA-binding transcriptional activator of the SARP family [Signal transduction mechanisms]
Probab=86.46 E-value=8.8 Score=38.56 Aligned_cols=65 Identities=26% Similarity=0.316 Sum_probs=45.6
Q ss_pred cHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhCCChHHHHHHHHHHHHh
Q 006120 234 HFRALKLLGSALFGVGEYRAAVKALEEAIFIKPDYADAHCDLASALHAMGEDERAIEVFQKAIDL 298 (660)
Q Consensus 234 ~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~ 298 (660)
...++..++..+...|+++.++..+++.+..+|-+-..|..+-..|...|+...|+..|++.-+.
T Consensus 152 ~~~~l~~lae~~~~~~~~~~~~~~l~~Li~~dp~~E~~~~~lm~~y~~~g~~~~ai~~y~~l~~~ 216 (280)
T COG3629 152 FIKALTKLAEALIACGRADAVIEHLERLIELDPYDEPAYLRLMEAYLVNGRQSAAIRAYRQLKKT 216 (280)
T ss_pred HHHHHHHHHHHHHhcccHHHHHHHHHHHHhcCccchHHHHHHHHHHHHcCCchHHHHHHHHHHHH
Confidence 34556666777777777777777777777777777777777777777777777777777766553
No 382
>PF10579 Rapsyn_N: Rapsyn N-terminal myristoylation and linker region; InterPro: IPR019568 Neuromuscular junction formation relies upon the clustering of acetylcholine receptors and other proteins in the muscle membrane. Rapsyn is a peripheral membrane protein that is selectively concentrated at the neuromuscular junction and is essential for the formation of synaptic acetylcholine receptor aggregates. Acetylcholine receptors fail to aggregate beneath nerve terminals in mice where rapsyn has been knocked out. The N-terminal six amino acids of rapsyn are its myristoylation site, and myristoylation is necessary for the targeting of the protein to the membrane []. ; GO: 0008270 zinc ion binding, 0033130 acetylcholine receptor binding, 0007268 synaptic transmission, 0005856 cytoskeleton, 0030054 cell junction, 0045211 postsynaptic membrane
Probab=86.27 E-value=8.5 Score=30.39 Aligned_cols=66 Identities=24% Similarity=0.207 Sum_probs=52.2
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHH---HHHHHHHHHHcCCHHHHHHHHHHHHHHhcc
Q 006120 126 DGHMAIGRVLYEHQLFKEALVSFKRACELQPTDVRP---HFRAGNCLYVLGRYREAKEEYLLALEAAET 191 (660)
Q Consensus 126 ~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~---~~~la~~~~~~g~~~~A~~~~~~al~~~p~ 191 (660)
.-....|.-++...+.++|+..++++++..++.+.- +-.+..+|...|+|.+.+++..+-+.+...
T Consensus 7 k~~ie~GlkLY~~~~~~~Al~~W~~aL~k~~~~~~rf~~lG~l~qA~~e~Gkyr~~L~fA~~Q~~~A~e 75 (80)
T PF10579_consen 7 KQQIEKGLKLYHQNETQQALQKWRKALEKITDREDRFRVLGYLIQAHMEWGKYREMLAFALQQLEIAEE 75 (80)
T ss_pred HHHHHHHHHHhccchHHHHHHHHHHHHhhcCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345667777889999999999999999998776654 445567788999999999988777766543
No 383
>KOG0529 consensus Protein geranylgeranyltransferase type II, alpha subunit [Posttranslational modification, protein turnover, chaperones]
Probab=86.16 E-value=22 Score=37.35 Aligned_cols=141 Identities=17% Similarity=0.087 Sum_probs=99.3
Q ss_pred HHHHHHHHHHHHHhccCCCchhchHHHHHHHHHH----HHHHCCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHCCC-
Q 006120 176 REAKEEYLLALEAAETGGNQWAYLLPQIYVNLGI----ALEGEGMVLSACEYYRESAILCPTHFRALKLLGSALFGVGE- 250 (660)
Q Consensus 176 ~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~la~----~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~- 250 (660)
.++++.-.+.+..+|+....|......+...+.. -..++...++-+.+...+++.+|+...+|+....++.+.+.
T Consensus 46 ~e~l~lt~~ll~~npe~~t~wN~Rr~~~~~r~~~~~~~~~ek~~~ld~eL~~~~~~L~~npksY~aW~hR~w~L~~~p~~ 125 (421)
T KOG0529|consen 46 EEHLELTSELLEKNPEFYTVWNYRRLIIEERLTRAQLEPLEKQALLDEELKYVESALKVNPKSYGAWHHRKWVLQKNPHS 125 (421)
T ss_pred hHHHHHHHHHHhhCchhhhhhhhHHHHHHHhhhhhcCCHHHHHHhhHHHHHHHHHHHHhCchhHHHHHHHHHHHHhCCCc
Confidence 4566666777777777443333111111111221 12233356777888999999999999999999999998764
Q ss_pred -HHHHHHHHHHHHHhCCCCHHHHHHHHHHHH----hCCChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHh
Q 006120 251 -YRAAVKALEEAIFIKPDYADAHCDLASALH----AMGEDERAIEVFQKAIDLKPGHVDALYNLGGLYMDL 316 (660)
Q Consensus 251 -~~~A~~~~~~al~~~p~~~~~~~~la~~~~----~~g~~~~A~~~~~~al~~~p~~~~a~~~La~~~~~~ 316 (660)
+..-++..+++++.+|.+..+|...=.+.. ......+=+++..+++.-++.|..+|.....++..+
T Consensus 126 ~~~~EL~lcek~L~~D~RNfh~W~YRRfV~~~~~~~~~~~~~El~ftt~~I~~nfSNYsaWhyRs~lL~~l 196 (421)
T KOG0529|consen 126 DWNTELQLCEKALKQDPRNFHAWHYRRFVVEQAERSRNLEKEELEFTTKLINDNFSNYSAWHYRSLLLSTL 196 (421)
T ss_pred hHHHHHHHHHHHHhcCcccccchHHHHHHHHHHhcccccchhHHHHHHHHHhccchhhhHHHHHHHHHHHh
Confidence 678899999999999999877765433332 233466778889999999999999999888887744
No 384
>PF10373 EST1_DNA_bind: Est1 DNA/RNA binding domain; InterPro: IPR018834 Est1 is a protein which recruits or activates telomerase at the site of polymerisation [, ]. This is the DNA/RNA binding domain of EST1 []. ; PDB: 1YA0_B.
Probab=86.12 E-value=2.3 Score=42.93 Aligned_cols=62 Identities=19% Similarity=0.214 Sum_probs=29.4
Q ss_pred HHHHHHHHHHhCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHh
Q 006120 220 ACEYYRESAILCPTHFRALKLLGSALFGVGEYRAAVKALEEAIFIKPDYADAHCDLASALHA 281 (660)
Q Consensus 220 A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~ 281 (660)
|..+|.+|+.+.|.+...++.+|.++...|+.-.|+-+|-+++......+.+..||..++.+
T Consensus 1 A~~~Y~~A~~l~P~~G~p~nQLAvl~~~~~~~l~avy~y~Rsl~~~~Pf~~A~~NL~~lf~~ 62 (278)
T PF10373_consen 1 AERYYRKAIRLLPSNGNPYNQLAVLASYQGDDLDAVYYYIRSLAVRIPFPSARENLQKLFEK 62 (278)
T ss_dssp HHHHHHHHHHH-TTBSHHHHHHHHHHHHTT-HHHHHHHHHHHHSSSB--HHHHHHHHHHHHH
T ss_pred CHHHHHHHHHhCCCCCCcccchhhhhccccchHHHHHHHHHHHhcCCCcHHHHHHHHHHHHH
Confidence 34455555555555555555555555555555555555555554433334445555444444
No 385
>COG3629 DnrI DNA-binding transcriptional activator of the SARP family [Signal transduction mechanisms]
Probab=86.06 E-value=4.9 Score=40.30 Aligned_cols=64 Identities=19% Similarity=0.194 Sum_probs=60.2
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Q 006120 125 FDGHMAIGRVLYEHQLFKEALVSFKRACELQPTDVRPHFRAGNCLYVLGRYREAKEEYLLALEA 188 (660)
Q Consensus 125 ~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~ 188 (660)
+.++..++..+...|+++.++..+++.+..+|.+...|..+-..|...|+...|+..|++.-+.
T Consensus 153 ~~~l~~lae~~~~~~~~~~~~~~l~~Li~~dp~~E~~~~~lm~~y~~~g~~~~ai~~y~~l~~~ 216 (280)
T COG3629 153 IKALTKLAEALIACGRADAVIEHLERLIELDPYDEPAYLRLMEAYLVNGRQSAAIRAYRQLKKT 216 (280)
T ss_pred HHHHHHHHHHHHhcccHHHHHHHHHHHHhcCccchHHHHHHHHHHHHcCCchHHHHHHHHHHHH
Confidence 4677889999999999999999999999999999999999999999999999999999998874
No 386
>PF10373 EST1_DNA_bind: Est1 DNA/RNA binding domain; InterPro: IPR018834 Est1 is a protein which recruits or activates telomerase at the site of polymerisation [, ]. This is the DNA/RNA binding domain of EST1 []. ; PDB: 1YA0_B.
Probab=85.50 E-value=2.9 Score=42.16 Aligned_cols=62 Identities=21% Similarity=0.241 Sum_probs=54.4
Q ss_pred HHHHHHHHHHhCCCCHHHHHHHHHHHHhCCChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH
Q 006120 254 AVKALEEAIFIKPDYADAHCDLASALHAMGEDERAIEVFQKAIDLKPGHVDALYNLGGLYMD 315 (660)
Q Consensus 254 A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~La~~~~~ 315 (660)
|+.+|.+|+.+.|++...|+.+|.+....|+.-.|+-+|-+++......+.+..+|..++..
T Consensus 1 A~~~Y~~A~~l~P~~G~p~nQLAvl~~~~~~~l~avy~y~Rsl~~~~Pf~~A~~NL~~lf~~ 62 (278)
T PF10373_consen 1 AERYYRKAIRLLPSNGNPYNQLAVLASYQGDDLDAVYYYIRSLAVRIPFPSARENLQKLFEK 62 (278)
T ss_dssp HHHHHHHHHHH-TTBSHHHHHHHHHHHHTT-HHHHHHHHHHHHSSSB--HHHHHHHHHHHHH
T ss_pred CHHHHHHHHHhCCCCCCcccchhhhhccccchHHHHHHHHHHHhcCCCcHHHHHHHHHHHHH
Confidence 78899999999999999999999999999999999999999997765568899999999887
No 387
>COG1747 Uncharacterized N-terminal domain of the transcription elongation factor GreA [Function unknown]
Probab=84.80 E-value=63 Score=35.04 Aligned_cols=61 Identities=15% Similarity=-0.021 Sum_probs=33.0
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Q 006120 126 DGHMAIGRVLYEHQLFKEALVSFKRACELQPTDVRPHFRAGNCLYVLGRYREAKEEYLLALEA 188 (660)
Q Consensus 126 ~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~ 188 (660)
.+++.++.+|... ..++-....++.++.+-++...-..++..|.. ++..++..+|.+++..
T Consensus 100 mal~el~q~y~en-~n~~l~~lWer~ve~dfnDvv~~ReLa~~yEk-ik~sk~a~~f~Ka~yr 160 (711)
T COG1747 100 MALLELLQCYKEN-GNEQLYSLWERLVEYDFNDVVIGRELADKYEK-IKKSKAAEFFGKALYR 160 (711)
T ss_pred HHHHHHHHHHHhc-CchhhHHHHHHHHHhcchhHHHHHHHHHHHHH-hchhhHHHHHHHHHHH
Confidence 4555566666555 23444555555555555555555555554444 5555666666665543
No 388
>COG5191 Uncharacterized conserved protein, contains HAT (Half-A-TPR) repeat [General function prediction only]
Probab=84.09 E-value=1.6 Score=43.55 Aligned_cols=77 Identities=9% Similarity=0.088 Sum_probs=66.0
Q ss_pred HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCcHHHHHH-HHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHH
Q 006120 200 LPQIYVNLGIALEGEGMVLSACEYYRESAILCPTHFRALKL-LGSALFGVGEYRAAVKALEEAIFIKPDYADAHCDLA 276 (660)
Q Consensus 200 ~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~-lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la 276 (660)
.+..|...+......|-+.+--..|.+++..+|.+++.|.. -+.-+...++.+.+...+.+++.++|+++.+|...-
T Consensus 106 D~k~w~~y~~Y~~k~k~y~~~~nI~~~~l~khP~nvdlWI~~c~~e~~~~ani~s~Ra~f~~glR~N~~~p~iw~eyf 183 (435)
T COG5191 106 DPKIWSQYAAYVIKKKMYGEMKNIFAECLTKHPLNVDLWIYCCAFELFEIANIESSRAMFLKGLRMNSRSPRIWIEYF 183 (435)
T ss_pred CcHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCceeeeeeccchhhhhccHHHHHHHHHhhhccCCCCchHHHHHH
Confidence 56677777777778888999999999999999999999977 455667789999999999999999999999887544
No 389
>PF11817 Foie-gras_1: Foie gras liver health family 1; InterPro: IPR021773 Mutating the gene foie gras in zebrafish has been shown to affect development; the mutants develop large, lipid-filled hepatocytes in the liver, resembling those in individuals with fatty liver disease []. Foie-gras protein is long and has several well-defined domains though none of them has a known function. We have annotated this one as the first []. THe C terminus of this region contains TPR repeats.
Probab=84.02 E-value=11 Score=37.36 Aligned_cols=25 Identities=0% Similarity=-0.110 Sum_probs=18.7
Q ss_pred CchHHHHhccCchhhHHHHHHHHHH
Q 006120 32 NHGIVFDDTWKIVDDLEILVKRLKA 56 (660)
Q Consensus 32 ~lg~~y~~~~~~~~al~~~~~~~~~ 56 (660)
.+-.+|...+...+|+..+.+-+..
T Consensus 15 ki~rl~l~~~~~~~Av~q~~~H~~~ 39 (247)
T PF11817_consen 15 KICRLYLWLNQPTEAVRQFRAHIDR 39 (247)
T ss_pred HHHHHHHhCCCHHHHHHHHHHHHHH
Confidence 3456677788888888888887774
No 390
>KOG2422 consensus Uncharacterized conserved protein [Function unknown]
Probab=83.81 E-value=50 Score=36.32 Aligned_cols=160 Identities=16% Similarity=0.038 Sum_probs=103.4
Q ss_pred HHHHHHHHHHHHHHHhhcc---------CcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh-----C-----------
Q 006120 101 YAVFVKELGVLRNRADGAR---------SREEAFDGHMAIGRVLYEHQLFKEALVSFKRACEL-----Q----------- 155 (660)
Q Consensus 101 ~g~~~~Al~~l~~a~~~~~---------~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~-----~----------- 155 (660)
...|+++...|.-+....+ +.|..++.+..++.+...+|+.+-|....++++=. .
T Consensus 251 s~sYeqaq~~F~~av~~~d~n~v~~lL~ssPYHvdsLLqva~~~r~qgD~e~aadLieR~Ly~~d~a~hp~F~~~sg~cR 330 (665)
T KOG2422|consen 251 SNSYEQAQRDFYLAVIVHDPNNVLILLISSPYHVDSLLQVADIFRFQGDREMAADLIERGLYVFDRALHPNFIPFSGNCR 330 (665)
T ss_pred chHHHHHHHHHHHHHhhcCCcceeeeeccCCcchhHHHHHHHHHHHhcchhhHHHHHHHHHHHHHHHhcccccccccccc
Confidence 3456666666666655433 66778899999999999999999888888877632 1
Q ss_pred -----CCCHH---HHHHHHHHHHHcCCHHHHHHHHHHHHHHhccCCCchhchHHHHHHHHHHHHHHCCCHHHHHHHHHHH
Q 006120 156 -----PTDVR---PHFRAGNCLYVLGRYREAKEEYLLALEAAETGGNQWAYLLPQIYVNLGIALEGEGMVLSACEYYRES 227 (660)
Q Consensus 156 -----p~~~~---~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a 227 (660)
|.+-. +++..-..+.+.|-+..|.++.+-.+.++|..... -+.+.+-....+..+|+=-++.++..
T Consensus 331 L~y~~~eNR~FyL~l~r~m~~l~~RGC~rTA~E~cKlllsLdp~eDPl------~~l~~ID~~ALrareYqwiI~~~~~~ 404 (665)
T KOG2422|consen 331 LPYIYPENRQFYLALFRYMQSLAQRGCWRTALEWCKLLLSLDPSEDPL------GILYLIDIYALRAREYQWIIELSNEP 404 (665)
T ss_pred CcccchhhHHHHHHHHHHHHHHHhcCChHHHHHHHHHHhhcCCcCCch------hHHHHHHHHHHHHHhHHHHHHHHHHH
Confidence 22222 33334455677899999999999999999984221 12222223334445555555555544
Q ss_pred -----HHhCCCcHHHHHHHHHHHHHCCC---HHHHHHHHHHHHHhCCC
Q 006120 228 -----AILCPTHFRALKLLGSALFGVGE---YRAAVKALEEAIFIKPD 267 (660)
Q Consensus 228 -----l~~~p~~~~~~~~lg~~~~~~g~---~~~A~~~~~~al~~~p~ 267 (660)
+..-|+.+. -..++..|..... -+.|...+.+|+.+.|.
T Consensus 405 e~~n~l~~~PN~~y-S~AlA~f~l~~~~~~~rqsa~~~l~qAl~~~P~ 451 (665)
T KOG2422|consen 405 ENMNKLSQLPNFGY-SLALARFFLRKNEEDDRQSALNALLQALKHHPL 451 (665)
T ss_pred HhhccHhhcCCchH-HHHHHHHHHhcCChhhHHHHHHHHHHHHHhCcH
Confidence 233344332 2345666666555 57899999999999884
No 391
>PF12739 TRAPPC-Trs85: ER-Golgi trafficking TRAPP I complex 85 kDa subunit; InterPro: IPR024420 This entry represents Trs85, a subunit of the TRAPP III complex []. Trs85 is a multimeric guanine nucleotide-exchange factor for Ypt1, required for membrane expansion during autophagy and the CVT pathway. It directs Ypt1 to the phagophore assembly site [, , , ].
Probab=83.81 E-value=52 Score=35.46 Aligned_cols=166 Identities=18% Similarity=0.112 Sum_probs=94.6
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHhccCCCchhchHHHHHHHHHHHHHHCCCH-------HHHHHHHHHHHHhC-
Q 006120 160 RPHFRAGNCLYVLGRYREAKEEYLLALEAAETGGNQWAYLLPQIYVNLGIALEGEGMV-------LSACEYYRESAILC- 231 (660)
Q Consensus 160 ~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~la~~~~~~g~~-------~~A~~~~~~al~~~- 231 (660)
.....+|...+.+++|+-|...|+.+.+-...+..... .+.+.-..|.++...+.. ++...+++.|+...
T Consensus 209 ~q~R~LAD~aFml~Dy~~A~s~Y~~~k~Df~~Dkaw~~--~A~~~Em~alsl~~~~~~~~~k~~~~~~~~~le~A~~~Y~ 286 (414)
T PF12739_consen 209 AQMRRLADLAFMLRDYELAYSTYRLLKKDFKNDKAWKY--LAGAQEMAALSLLMQGQSISAKIRKDEIEPYLENAYYTYL 286 (414)
T ss_pred HHHHHHHHHHHHHccHHHHHHHHHHHHHHHhhchhHHH--HHhHHHHHHHHHHhcCCCCccccccccHHHHHHHHHHHHH
Confidence 34567899999999999999999998876543322211 344444455555555422 24444555443321
Q ss_pred ----------CCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh--CC--C---CHHHHHHHHHHH--HhCCChHHHHHHH
Q 006120 232 ----------PTHFRALKLLGSALFGVGEYRAAVKALEEAIFI--KP--D---YADAHCDLASAL--HAMGEDERAIEVF 292 (660)
Q Consensus 232 ----------p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~--~p--~---~~~~~~~la~~~--~~~g~~~~A~~~~ 292 (660)
.....+....+.++...+.+.+|...+-+.... .. . .+..+-..|.++ ........-..-+
T Consensus 287 ~~~~~~~~~~~~a~R~~ll~~ell~~~~~~~~a~~~~~~~~~~~l~~~l~~~~~alllE~~a~~~~~~~~~~~~~~~~r~ 366 (414)
T PF12739_consen 287 KSALPRCSLPYYALRCALLLAELLKSRGGYWEAADQLIRWTSEILESDLRPFGSALLLEQAAYCYASLRSNRPSPGLTRF 366 (414)
T ss_pred hhhccccccccchHHHHHHHHHHHHhcCccHHHHHHHHHHHHHHHhhhhhhHhhHHHHHHHHHhhcccccCCCCccchhh
Confidence 122445666777888888888877776666655 22 2 233444555555 1110000000000
Q ss_pred HHHHHhCCCCHHHHHHH-HHHHHHhcCCCHHHHHHHHHHHHcccCC
Q 006120 293 QKAIDLKPGHVDALYNL-GGLYMDLGAGETEEAKKALKEALKMTNR 337 (660)
Q Consensus 293 ~~al~~~p~~~~a~~~L-a~~~~~~~~g~~~eA~~~~~~al~l~p~ 337 (660)
+| ...|..| |.-|... |+...|..+|.+++.+...
T Consensus 367 RK--------~af~~vLAg~~~~~~--~~~~~a~rcy~~a~~vY~~ 402 (414)
T PF12739_consen 367 RK--------YAFHMVLAGHRYSKA--GQKKHALRCYKQALQVYEG 402 (414)
T ss_pred HH--------HHHHHHHHHHHHHHC--CCHHHHHHHHHHHHHHhCC
Confidence 00 1233333 4455666 9999999999999987654
No 392
>PF07721 TPR_4: Tetratricopeptide repeat; InterPro: IPR011717 This entry includes tetratricopeptide-like repeats not detected by the IPR001440 from INTERPRO, IPR013105 from INTERPRO and IPR011716 from INTERPRO models. The tetratricopeptide repeat (TPR) motif is a protein-protein interaction module found in multiple copies in a number of functionally different proteins that facilitates specific interactions with a partner protein(s) [].; GO: 0042802 identical protein binding
Probab=83.26 E-value=1.4 Score=26.50 Aligned_cols=17 Identities=41% Similarity=0.464 Sum_probs=6.6
Q ss_pred HHHHHHHhCCChHHHHH
Q 006120 274 DLASALHAMGEDERAIE 290 (660)
Q Consensus 274 ~la~~~~~~g~~~~A~~ 290 (660)
++|.++..+|++++|..
T Consensus 6 ~la~~~~~~G~~~eA~~ 22 (26)
T PF07721_consen 6 ALARALLAQGDPDEAER 22 (26)
T ss_pred HHHHHHHHcCCHHHHHH
Confidence 33333333333333333
No 393
>PF09670 Cas_Cas02710: CRISPR-associated protein (Cas_Cas02710)
Probab=82.85 E-value=39 Score=35.95 Aligned_cols=63 Identities=14% Similarity=0.003 Sum_probs=46.1
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHH--HHHHH--HHHHHHcCCHHHHHHHHHHHHHH
Q 006120 126 DGHMAIGRVLYEHQLFKEALVSFKRACELQPTDVR--PHFRA--GNCLYVLGRYREAKEEYLLALEA 188 (660)
Q Consensus 126 ~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~--~~~~l--a~~~~~~g~~~~A~~~~~~al~~ 188 (660)
.-....+..++..++|..|...+......-|.... .+..+ |..+...-++.+|.+.+++.+..
T Consensus 132 ~~~~~~a~~l~n~~~y~aA~~~l~~l~~rl~~~~~~~~~~~l~~~y~~WD~fd~~~A~~~l~~~~~~ 198 (379)
T PF09670_consen 132 DREWRRAKELFNRYDYGAAARILEELLRRLPGREEYQRYKDLCEGYDAWDRFDHKEALEYLEKLLKR 198 (379)
T ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCchhhHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHH
Confidence 34566778888999999999999999886333332 34444 44456788899999999988765
No 394
>COG1747 Uncharacterized N-terminal domain of the transcription elongation factor GreA [Function unknown]
Probab=82.78 E-value=77 Score=34.45 Aligned_cols=196 Identities=10% Similarity=-0.023 Sum_probs=123.3
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhccCCCchhchHHHHHHH
Q 006120 127 GHMAIGRVLYEHQLFKEALVSFKRACELQPTDVRPHFRAGNCLYVLGRYREAKEEYLLALEAAETGGNQWAYLLPQIYVN 206 (660)
Q Consensus 127 ~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~ 206 (660)
.+..+-.++-.+-.+.-....+.+.+... .+..+++.++.+|... ..++-...+++.++.+-+ ....-..
T Consensus 68 ~l~~~~~~f~~n~k~~~veh~c~~~l~~~-e~kmal~el~q~y~en-~n~~l~~lWer~ve~dfn--------Dvv~~Re 137 (711)
T COG1747 68 CLVTLLTIFGDNHKNQIVEHLCTRVLEYG-ESKMALLELLQCYKEN-GNEQLYSLWERLVEYDFN--------DVVIGRE 137 (711)
T ss_pred HHHHHHHHhccchHHHHHHHHHHHHHHhc-chHHHHHHHHHHHHhc-CchhhHHHHHHHHHhcch--------hHHHHHH
Confidence 44445555555556666777888888875 4568889999999998 557778888988888766 5555666
Q ss_pred HHHHHHHCCCHHHHHHHHHHHHHhC-CC--c---HHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHH-HHHHHHH
Q 006120 207 LGIALEGEGMVLSACEYYRESAILC-PT--H---FRALKLLGSALFGVGEYRAAVKALEEAIFIK-PDYADA-HCDLASA 278 (660)
Q Consensus 207 la~~~~~~g~~~~A~~~~~~al~~~-p~--~---~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-p~~~~~-~~~la~~ 278 (660)
|+..|.+ ++.+++..+|.+++... |. + .+.|..+-..- -.+.+.-+....+.-... .....+ +..+-.-
T Consensus 138 La~~yEk-ik~sk~a~~f~Ka~yrfI~~~q~~~i~evWeKL~~~i--~dD~D~fl~l~~kiqt~lg~~~~~Vl~qdv~~~ 214 (711)
T COG1747 138 LADKYEK-IKKSKAAEFFGKALYRFIPRRQNAAIKEVWEKLPELI--GDDKDFFLRLQKKIQTKLGEGRGSVLMQDVYKK 214 (711)
T ss_pred HHHHHHH-hchhhHHHHHHHHHHHhcchhhhhhHHHHHHHHHHhc--cccHHHHHHHHHHHHHhhccchHHHHHHHHHHH
Confidence 7777776 89999999999997642 21 1 22333332211 122333333322222211 111222 2233355
Q ss_pred HHhCCChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHh------------------cCCCHHHHHHHHHHHHccc
Q 006120 279 LHAMGEDERAIEVFQKAIDLKPGHVDALYNLGGLYMDL------------------GAGETEEAKKALKEALKMT 335 (660)
Q Consensus 279 ~~~~g~~~~A~~~~~~al~~~p~~~~a~~~La~~~~~~------------------~~g~~~eA~~~~~~al~l~ 335 (660)
|....++.+|++.+...++.+..+..+.-++...+... .-.++.+++.-|++.+.++
T Consensus 215 Ys~~eN~~eai~Ilk~il~~d~k~~~ar~~~i~~lRd~y~~~~~~e~yl~~s~i~~~~rnf~~~l~dFek~m~f~ 289 (711)
T COG1747 215 YSENENWTEAIRILKHILEHDEKDVWARKEIIENLRDKYRGHSQLEEYLKISNISQSGRNFFEALNDFEKLMHFD 289 (711)
T ss_pred hccccCHHHHHHHHHHHhhhcchhhhHHHHHHHHHHHHhccchhHHHHHHhcchhhccccHHHHHHHHHHHheec
Confidence 66778899999999999998888777776666665541 0145666777777766654
No 395
>KOG4286 consensus Dystrophin-like protein [Cell motility; Signal transduction mechanisms; Cytoskeleton]
Probab=82.62 E-value=1.4 Score=48.86 Aligned_cols=151 Identities=21% Similarity=0.433 Sum_probs=82.1
Q ss_pred HHHhhhhccCCCcccccchhhhhhhcccCCCCHHHHHHhhhhhhcccccCCCCccchhc-------cHHH---HHHHhHH
Q 006120 463 NERILSVLDETGSARVDLGMFYAILAPICSGSPEKRKRVAFDALLWRPVNEGSTQVRKV-------DAVR---YIKLLRA 532 (660)
Q Consensus 463 ~~~~l~~hDr~g~~~fev~~y~~~~~~~~~~~~~~r~r~~~d~~~~~~~~~~~a~~i~~-------D~~~---~l~dL~~ 532 (660)
+--++.+.|.+++|...|.-|-..+--.|...+...++-.|. .+.+..-++++- |.+. ++|.-+
T Consensus 472 lN~llNvyD~~R~g~irvls~ki~~i~lck~~leek~~ylF~-----~vA~~~sq~~q~~l~lLL~dliqipr~lGE~a- 545 (966)
T KOG4286|consen 472 LNWLLNVYDTGRTGRIRVLSFKIGIISLCKAHLEDKYRYLFK-----QVASSTSQCDQRRLGLLLHDLIQIPRQLGEVA- 545 (966)
T ss_pred HHHHHHhcccCCCcceEEeeehhhHHHHhcchhHHHHHHHHH-----HHcCchhhHHHHHHHHHHHHHHHHHHHHhHHH-
Confidence 345678899987776444333111222345566666664444 222222223222 2222 233322
Q ss_pred HhccCC---CchhhhhhhccCCCcccchhHHhh-hccCCCCcc--hhhhhhhhcccCccccCCCccccccc-cccccccc
Q 006120 533 VYIPSH---GVSEMMEVHGEADSSMVSLSEFLV-MFDDPDWGF--GIMSTLMKLEAGDRNRHGRHVCSVCR-YPIIGSRF 605 (660)
Q Consensus 533 ~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~ 605 (660)
.||.+- .|+. =+.+.-+...|++.+|.. |=-+|..-- -+||- ++.-.+.-|- ..|++|+ .||||=||
T Consensus 546 AfGgsNvepsvrs--CF~~v~~~pei~~~~f~dw~~~epqsmVwL~vlhR---v~~aE~~kH~-~kCniCk~~pIvG~Ry 619 (966)
T KOG4286|consen 546 AFGGSNIEPSVRS--CFQFVNNKPEIEAALFLDWMRLEPQSMVWLPVLHR---VAAAETAKHQ-AKCNICKECPIIGFRY 619 (966)
T ss_pred hhcCCCCChHHHH--HHHhcCCCCcchHHHHHHHhccCcchhhHHHHHHH---HHHHHHHHhh-hhcchhhhCccceeee
Confidence 254431 2222 122345555667777776 444554221 23333 4445556664 4699998 69999999
Q ss_pred ccccc-ccccccccccCCCCC
Q 006120 606 KEMKS-HFSLCSQCYSEGKVP 625 (660)
Q Consensus 606 ~~~~~-~~~~~~~~~~~~~~~ 625 (660)
+-.+. +.++|-.|.--|.--
T Consensus 620 R~l~~fn~dlCq~CF~sgraa 640 (966)
T KOG4286|consen 620 RSLKHFNYDICQSCFFSGRAA 640 (966)
T ss_pred eehhhcChhHHhhHhhhcccc
Confidence 98774 567999998776543
No 396
>PF11207 DUF2989: Protein of unknown function (DUF2989); InterPro: IPR021372 Some members in this bacterial family of proteins are annotated as lipoproteins however this cannot be confirmed.
Probab=82.55 E-value=10 Score=35.97 Aligned_cols=55 Identities=15% Similarity=0.062 Sum_probs=33.0
Q ss_pred HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCC----cHHHHHHHHHHHHHCCCHHHHH
Q 006120 200 LPQIYVNLGIALEGEGMVLSACEYYRESAILCPT----HFRALKLLGSALFGVGEYRAAV 255 (660)
Q Consensus 200 ~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~----~~~~~~~lg~~~~~~g~~~~A~ 255 (660)
.+...+.+|..|. ..+.++|+..+.+++++.+. +++++..|+.++.++|+++.|.
T Consensus 140 t~elq~aLAtyY~-krD~~Kt~~ll~~~L~l~~~~~~~n~eil~sLas~~~~~~~~e~AY 198 (203)
T PF11207_consen 140 TAELQYALATYYT-KRDPEKTIQLLLRALELSNPDDNFNPEILKSLASIYQKLKNYEQAY 198 (203)
T ss_pred CHHHHHHHHHHHH-ccCHHHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHhcchhhhh
Confidence 4556666665554 45666666666666665432 3566666666666666666553
No 397
>PF07721 TPR_4: Tetratricopeptide repeat; InterPro: IPR011717 This entry includes tetratricopeptide-like repeats not detected by the IPR001440 from INTERPRO, IPR013105 from INTERPRO and IPR011716 from INTERPRO models. The tetratricopeptide repeat (TPR) motif is a protein-protein interaction module found in multiple copies in a number of functionally different proteins that facilitates specific interactions with a partner protein(s) [].; GO: 0042802 identical protein binding
Probab=82.37 E-value=1.8 Score=26.08 Aligned_cols=22 Identities=23% Similarity=0.072 Sum_probs=11.2
Q ss_pred HHHHHHHHHHHCCCHHHHHHHH
Q 006120 203 IYVNLGIALEGEGMVLSACEYY 224 (660)
Q Consensus 203 ~~~~la~~~~~~g~~~~A~~~~ 224 (660)
+.+.+|.++...|++++|...+
T Consensus 3 a~~~la~~~~~~G~~~eA~~~l 24 (26)
T PF07721_consen 3 ARLALARALLAQGDPDEAERLL 24 (26)
T ss_pred HHHHHHHHHHHcCCHHHHHHHH
Confidence 3444555555555555555444
No 398
>COG4941 Predicted RNA polymerase sigma factor containing a TPR repeat domain [Transcription]
Probab=82.29 E-value=63 Score=33.13 Aligned_cols=179 Identities=13% Similarity=0.063 Sum_probs=97.4
Q ss_pred HHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhccCCCchhchHHHHHHHHHHHHHHCCCHHHH
Q 006120 141 FKEALVSFKRACELQPTDVRPHFRAGNCLYVLGRYREAKEEYLLALEAAETGGNQWAYLLPQIYVNLGIALEGEGMVLSA 220 (660)
Q Consensus 141 ~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~la~~~~~~g~~~~A 220 (660)
-++|+..-+-...+.|..++++-.++.+++...+... ..+.+... ..+...-..+...+-.+++
T Consensus 212 c~EairLgRll~~L~p~EPE~~GL~ALmll~~sR~~A---------R~~~~G~~-------vlL~dQDr~lW~r~lI~eg 275 (415)
T COG4941 212 CDEAIRLGRLLARLLPGEPEALGLLALMLLQESRRPA---------RFDADGEP-------VLLEDQDRSLWDRALIDEG 275 (415)
T ss_pred HHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHhhhhh---------ccCCCCCe-------eeccccchhhhhHHHHHHH
Confidence 4677777777788889999988888877665433211 11111100 0000000111122334556
Q ss_pred HHHHHHHHHhC-CCcHHHHHHHHHHHH-----HCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhCCChHHHHHHHHH
Q 006120 221 CEYYRESAILC-PTHFRALKLLGSALF-----GVGEYRAAVKALEEAIFIKPDYADAHCDLASALHAMGEDERAIEVFQK 294 (660)
Q Consensus 221 ~~~~~~al~~~-p~~~~~~~~lg~~~~-----~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~ 294 (660)
...+.+++... |.-....-.++.++. ..-+|..-..+|.....+.|. +.+-.|.+....+..-.+.++...+.
T Consensus 276 ~all~rA~~~~~pGPYqlqAAIaa~HA~a~~aedtDW~~I~aLYdaL~~~apS-PvV~LNRAVAla~~~Gp~agLa~ve~ 354 (415)
T COG4941 276 LALLDRALASRRPGPYQLQAAIAALHARARRAEDTDWPAIDALYDALEQAAPS-PVVTLNRAVALAMREGPAAGLAMVEA 354 (415)
T ss_pred HHHHHHHHHcCCCChHHHHHHHHHHHHhhcccCCCChHHHHHHHHHHHHhCCC-CeEeehHHHHHHHhhhHHhHHHHHHH
Confidence 66666666543 222222222232222 234566555666655555553 45555666666655556666666655
Q ss_pred HHHh--CCCCHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHcccCCh
Q 006120 295 AIDL--KPGHVDALYNLGGLYMDLGAGETEEAKKALKEALKMTNRV 338 (660)
Q Consensus 295 al~~--~p~~~~a~~~La~~~~~~~~g~~~eA~~~~~~al~l~p~~ 338 (660)
.... -..+...+...|.++.++ |+.++|...|++++.+.++.
T Consensus 355 L~~~~~L~gy~~~h~~RadlL~rL--gr~~eAr~aydrAi~La~~~ 398 (415)
T COG4941 355 LLARPRLDGYHLYHAARADLLARL--GRVEEARAAYDRAIALARNA 398 (415)
T ss_pred hhcccccccccccHHHHHHHHHHh--CChHHHHHHHHHHHHhcCCh
Confidence 5443 233445666677777777 78888888888888887663
No 399
>PF07720 TPR_3: Tetratricopeptide repeat; InterPro: IPR011716 This entry includes tetratricopeptide-like repeats found in the LcrH/SycD-like chaperones [].; PDB: 3KS2_O 3GZ2_A 3GZ1_A 3GYZ_A 4AM9_A 2VGX_A 2VGY_A.
Probab=81.56 E-value=5 Score=26.46 Aligned_cols=19 Identities=26% Similarity=0.300 Sum_probs=7.6
Q ss_pred HHHHHHHHhCCChHHHHHH
Q 006120 273 CDLASALHAMGEDERAIEV 291 (660)
Q Consensus 273 ~~la~~~~~~g~~~~A~~~ 291 (660)
..+|..+..+|++++|+..
T Consensus 5 y~~a~~~y~~~ky~~A~~~ 23 (36)
T PF07720_consen 5 YGLAYNFYQKGKYDEAIHF 23 (36)
T ss_dssp HHHHHHHHHTT-HHHHHHH
T ss_pred HHHHHHHHHHhhHHHHHHH
Confidence 3344444444444444444
No 400
>COG4455 ImpE Protein of avirulence locus involved in temperature-dependent protein secretion [General function prediction only]
Probab=81.09 E-value=52 Score=31.69 Aligned_cols=60 Identities=20% Similarity=0.195 Sum_probs=44.3
Q ss_pred HHHHHCCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCC
Q 006120 209 IALEGEGMVLSACEYYRESAILCPTHFRALKLLGSALFGVGEYRAAVKALEEAIFIKPDY 268 (660)
Q Consensus 209 ~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~ 268 (660)
.-+.+.+...+|+...+.-++..|.+......+-.++.-.|+|++|...++-+-.+.|++
T Consensus 9 seLL~~~sL~dai~~a~~qVkakPtda~~RhflfqLlcvaGdw~kAl~Ql~l~a~l~p~~ 68 (273)
T COG4455 9 SELLDDNSLQDAIGLARDQVKAKPTDAGGRHFLFQLLCVAGDWEKALAQLNLAATLSPQD 68 (273)
T ss_pred HHHHHhccHHHHHHHHHHHHhcCCccccchhHHHHHHhhcchHHHHHHHHHHHhhcCccc
Confidence 345666777777777777777777777777777777777777777777777777777765
No 401
>PF07720 TPR_3: Tetratricopeptide repeat; InterPro: IPR011716 This entry includes tetratricopeptide-like repeats found in the LcrH/SycD-like chaperones [].; PDB: 3KS2_O 3GZ2_A 3GZ1_A 3GYZ_A 4AM9_A 2VGX_A 2VGY_A.
Probab=80.63 E-value=6.3 Score=26.00 Aligned_cols=30 Identities=17% Similarity=0.317 Sum_probs=16.9
Q ss_pred HHHHHHHHHHHcCCHHHHHHH--HHHHHHhCC
Q 006120 127 GHMAIGRVLYEHQLFKEALVS--FKRACELQP 156 (660)
Q Consensus 127 ~~~~lg~~~~~~g~~~~A~~~--~~~al~~~p 156 (660)
.++.+|..+..+|++++|+.. |+-+..+++
T Consensus 3 ~~y~~a~~~y~~~ky~~A~~~~~y~~l~~ld~ 34 (36)
T PF07720_consen 3 YLYGLAYNFYQKGKYDEAIHFFQYAFLCALDK 34 (36)
T ss_dssp HHHHHHHHHHHTT-HHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHhhHHHHHHHHHHHHHHHhcc
Confidence 455566666666666666666 335544444
No 402
>PF10516 SHNi-TPR: SHNi-TPR; InterPro: IPR019544 The tetratrico peptide repeat region (TPR) is a structural motif present in a wide range of proteins [, , ]. It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. The X-ray structure of a domain containing three TPRs from protein phosphatase 5 revealed that TPR adopts a helix-turn-helix arrangement, with adjacent TPR motifs packing in a parallel fashion, resulting in a spiral of repeating anti-parallel alpha-helices []. The two helices are denoted helix A and helix B. The packing angle between helix A and helix B is ~24 degrees within a single TPR and generates a right-handed superhelical shape. Helix A interacts with helix B and with helix A' of the next TPR. Two protein surfaces are generated: the inner concave surface is contributed to mainly by residue on helices A, and the other surface presents residues from both helices A and B. This entry represents SHNi-TPR (Sim3-Hif1-NASP interrupted TPR), a sequence that is an interrupted form of TPR repeat [].
Probab=79.96 E-value=3.1 Score=27.83 Aligned_cols=26 Identities=23% Similarity=0.377 Sum_probs=11.3
Q ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHH
Q 006120 238 LKLLGSALFGVGEYRAAVKALEEAIF 263 (660)
Q Consensus 238 ~~~lg~~~~~~g~~~~A~~~~~~al~ 263 (660)
+..||.+-...++|++|+.-|+++++
T Consensus 4 ~~~Lgeisle~e~f~qA~~D~~~aL~ 29 (38)
T PF10516_consen 4 YDLLGEISLENENFEQAIEDYEKALE 29 (38)
T ss_pred HHHHHHHHHHhccHHHHHHHHHHHHH
Confidence 33444444444444444444444443
No 403
>PF10516 SHNi-TPR: SHNi-TPR; InterPro: IPR019544 The tetratrico peptide repeat region (TPR) is a structural motif present in a wide range of proteins [, , ]. It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. The X-ray structure of a domain containing three TPRs from protein phosphatase 5 revealed that TPR adopts a helix-turn-helix arrangement, with adjacent TPR motifs packing in a parallel fashion, resulting in a spiral of repeating anti-parallel alpha-helices []. The two helices are denoted helix A and helix B. The packing angle between helix A and helix B is ~24 degrees within a single TPR and generates a right-handed superhelical shape. Helix A interacts with helix B and with helix A' of the next TPR. Two protein surfaces are generated: the inner concave surface is contributed to mainly by residue on helices A, and the other surface presents residues from both helices A and B. This entry represents SHNi-TPR (Sim3-Hif1-NASP interrupted TPR), a sequence that is an interrupted form of TPR repeat [].
Probab=79.57 E-value=3.4 Score=27.62 Aligned_cols=29 Identities=24% Similarity=0.148 Sum_probs=14.5
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHh
Q 006120 161 PHFRAGNCLYVLGRYREAKEEYLLALEAA 189 (660)
Q Consensus 161 ~~~~la~~~~~~g~~~~A~~~~~~al~~~ 189 (660)
++..+|.+-...++|++|+.-|.+++++.
T Consensus 3 v~~~Lgeisle~e~f~qA~~D~~~aL~i~ 31 (38)
T PF10516_consen 3 VYDLLGEISLENENFEQAIEDYEKALEIQ 31 (38)
T ss_pred HHHHHHHHHHHhccHHHHHHHHHHHHHHH
Confidence 34445555555555555555555555443
No 404
>KOG2581 consensus 26S proteasome regulatory complex, subunit RPN3/PSMD3 [Posttranslational modification, protein turnover, chaperones]
Probab=79.11 E-value=90 Score=32.91 Aligned_cols=134 Identities=9% Similarity=-0.118 Sum_probs=94.3
Q ss_pred HHHHHHHHHHHHHHHHHHhhccC-c-----HHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC------CCCHHHHHHH
Q 006120 98 THDYAVFVKELGVLRNRADGARS-R-----EEAFDGHMAIGRVLYEHQLFKEALVSFKRACELQ------PTDVRPHFRA 165 (660)
Q Consensus 98 ~~~~g~~~~Al~~l~~a~~~~~~-~-----~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~------p~~~~~~~~l 165 (660)
..+..++.+|...-+..+..... + --.+..|+.+..++...|+...-...+...+... ...+...+.+
T Consensus 136 l~d~K~~kea~~~~~~~l~~i~~~nrRtlD~i~ak~~fy~~l~~E~~~~l~~~rs~l~~~lrtAtLrhd~e~qavLiN~L 215 (493)
T KOG2581|consen 136 LIDQKEYKEADKISDALLASISIQNRRTLDLIAAKLYFYLYLSYELEGRLADIRSFLHALLRTATLRHDEEGQAVLINLL 215 (493)
T ss_pred HHhhHHHHHHHHHHHHHHHHHHhcchhhHHHHHHHHHHHHHHHHHhhcchHHHHHHHHHHHHHhhhcCcchhHHHHHHHH
Confidence 35567888888877766554321 1 1123567888888888888777666666555542 1124455667
Q ss_pred HHHHHHcCCHHHHHHHHHHHHHHhccCCCchhchHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCcH
Q 006120 166 GNCLYVLGRYREAKEEYLLALEAAETGGNQWAYLLPQIYVNLGIALEGEGMVLSACEYYRESAILCPTHF 235 (660)
Q Consensus 166 a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~ 235 (660)
-+.|...+.|+.|.....+..- |...... ..+...+.+|.+..-+++|..|.+++-+|+...|.+.
T Consensus 216 Lr~yL~n~lydqa~~lvsK~~~--pe~~snn--e~ARY~yY~GrIkaiqldYssA~~~~~qa~rkapq~~ 281 (493)
T KOG2581|consen 216 LRNYLHNKLYDQADKLVSKSVY--PEAASNN--EWARYLYYLGRIKAIQLDYSSALEYFLQALRKAPQHA 281 (493)
T ss_pred HHHHhhhHHHHHHHHHhhcccC--ccccccH--HHHHHHHHHhhHHHhhcchhHHHHHHHHHHHhCcchh
Confidence 7888889999999888777652 2222111 1678889999999999999999999999999999853
No 405
>PF00244 14-3-3: 14-3-3 protein; InterPro: IPR023410 The 14-3-3 proteins are a large family of approximately 30kDa acidic proteins which exist primarily as homo- and heterodimeric within all eukaryotic cells [, ]. There is a high degree of sequence identity and conservation between all the 14-3-3 isotypes, particularly in the regions which form the dimer interface or line the central ligand binding channel of the dimeric molecule. Each 14-3-3 protein sequence can be roughly divided into three sections: a divergent amino terminus, the conserved core region and a divergent carboxyl terminus. The conserved middle core region of the 14-3-3s encodes an amphipathic groove that forms the main functional domain, a cradle for interacting with client proteins. The monomer consists of nine helices organised in an antiparallel manner, forming an L-shaped structure. The interior of the L-structure is composed of four helices: H3 and H5, which contain many charged and polar amino acids, and H7 and H9, which contain hydrophobic amino acids. These four helices form the concave amphipathic groove that interacts with target peptides. 14-3-3 proteins mainly bind proteins containing phosphothreonine or phosphoserine motifs however exceptions to this rule do exist. Extensive investigation of the 14-3-3 binding site of the mammalian serine/threonine kinase Raf-1 has produced a consensus sequence for 14-3-3-binding, RSxpSxP (in the single-letter amino-acid code, where x denotes any amino acid and p indicates that the next residue is phosphorylated). 14-3-3 proteins appear to effect intracellular signalling in one of three ways - by direct regulation of the catalytic activity of the bound protein, by regulating interactions between the bound protein and other molecules in the cell by sequestration or modification or by controlling the subcellular localisation of the bound ligand. Proteins appear to initially bind to a single dominant site and then subsequently to many, much weaker secondary interaction sites. The 14-3-3 dimer is capable of changing the conformation of its bound ligand whilst itself undergoing minimal structural alteration. This entry represents the structural domain found in 14-3-3 proteins.; PDB: 2O8P_A 3AXY_D 2C74_A 2C63_A 4DX0_A 1YWT_A 3P1O_A 3P1N_A 4DAU_A 3U9X_A ....
Probab=78.74 E-value=67 Score=31.60 Aligned_cols=60 Identities=8% Similarity=0.062 Sum_probs=36.0
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC-HHHHHHHHHHHHH-cCCHHHHHHHHHHHHH
Q 006120 128 HMAIGRVLYEHQLFKEALVSFKRACELQPTD-VRPHFRAGNCLYV-LGRYREAKEEYLLALE 187 (660)
Q Consensus 128 ~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~-~~~~~~la~~~~~-~g~~~~A~~~~~~al~ 187 (660)
+..+|.+..+.++|++.+.+.++++..++.. .+=...++.+|-. .|....+...+.....
T Consensus 4 li~~Aklaeq~eRy~dmv~~mk~~~~~~~eLt~eERnLlsvayKn~i~~~R~s~R~l~~~e~ 65 (236)
T PF00244_consen 4 LIYLAKLAEQAERYDDMVEYMKQLIEMNPELTEEERNLLSVAYKNVIGSRRASWRILSSIEQ 65 (236)
T ss_dssp HHHHHHHHHHTTHHHHHHHHHHHHHHTSS---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhcCHHHHHHHHHHHHccCCCCCHHHHHHHHHHHHhccccchHHHHhhhhHhh
Confidence 4567888888888888888888888887653 3344445555432 3444444444444333
No 406
>PF10255 Paf67: RNA polymerase I-associated factor PAF67; InterPro: IPR019382 RNA polymerase I is a multi-subunit enzyme and its transcription competence is dependent on the presence of PAF67 [].
Probab=78.51 E-value=87 Score=33.40 Aligned_cols=61 Identities=20% Similarity=0.132 Sum_probs=46.2
Q ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHhC---------CCCHHHHHHHHHHHHhCCChHHHHHHHHHHHHh
Q 006120 237 ALKLLGSALFGVGEYRAAVKALEEAIFIK---------PDYADAHCDLASALHAMGEDERAIEVFQKAIDL 298 (660)
Q Consensus 237 ~~~~lg~~~~~~g~~~~A~~~~~~al~~~---------p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~ 298 (660)
+...|.+++.-.|+|..|++.++.. +++ +-....++.+|-+|+.+++|.+|++.|...+-.
T Consensus 124 SligLlRvh~LLGDY~~Alk~l~~i-dl~~~~l~~~V~~~~is~~YyvGFaylMlrRY~DAir~f~~iL~y 193 (404)
T PF10255_consen 124 SLIGLLRVHCLLGDYYQALKVLENI-DLNKKGLYTKVPACHISTYYYVGFAYLMLRRYADAIRTFSQILLY 193 (404)
T ss_pred HHHHHHHHHHhccCHHHHHHHhhcc-CcccchhhccCcchheehHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3455677888899999999887642 222 233567888999999999999999999887653
No 407
>PF11817 Foie-gras_1: Foie gras liver health family 1; InterPro: IPR021773 Mutating the gene foie gras in zebrafish has been shown to affect development; the mutants develop large, lipid-filled hepatocytes in the liver, resembling those in individuals with fatty liver disease []. Foie-gras protein is long and has several well-defined domains though none of them has a known function. We have annotated this one as the first []. THe C terminus of this region contains TPR repeats.
Probab=77.76 E-value=24 Score=35.05 Aligned_cols=86 Identities=17% Similarity=0.081 Sum_probs=59.3
Q ss_pred CHHHHHHHHHHHHHhCCC------CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhccCCCchhchHHHHHHHHHHHHHH
Q 006120 140 LFKEALVSFKRACELQPT------DVRPHFRAGNCLYVLGRYREAKEEYLLALEAAETGGNQWAYLLPQIYVNLGIALEG 213 (660)
Q Consensus 140 ~~~~A~~~~~~al~~~p~------~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~la~~~~~ 213 (660)
.....+.++.+|.+.... .......+|..|...|++++|+++++.+...... +.|..+...+...+..++..
T Consensus 153 hs~~iI~lL~~A~~~f~~~~~~R~~~~l~~~~A~ey~~~g~~~~A~~~l~~~~~~yr~--egW~~l~~~~l~~l~~Ca~~ 230 (247)
T PF11817_consen 153 HSKLIIELLEKAYEQFKKYGQNRMASYLSLEMAEEYFRLGDYDKALKLLEPAASSYRR--EGWWSLLTEVLWRLLECAKR 230 (247)
T ss_pred hHHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHh--CCcHHHHHHHHHHHHHHHHH
Confidence 344556666666654321 2345567888889999999999999888665544 44555577788888888888
Q ss_pred CCCHHHHHHHHHHH
Q 006120 214 EGMVLSACEYYRES 227 (660)
Q Consensus 214 ~g~~~~A~~~~~~a 227 (660)
.|+.+..+.+.-+.
T Consensus 231 ~~~~~~~l~~~leL 244 (247)
T PF11817_consen 231 LGDVEDYLTTSLEL 244 (247)
T ss_pred hCCHHHHHHHHHHH
Confidence 88888777665444
No 408
>KOG4014 consensus Uncharacterized conserved protein (contains TPR repeat) [Function unknown]
Probab=77.51 E-value=62 Score=30.20 Aligned_cols=171 Identities=11% Similarity=0.034 Sum_probs=110.4
Q ss_pred HHHHHHHHHHHHHHHHHhhccCcHHHHHHHHHHHHHHH-----HcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHc-
Q 006120 99 HDYAVFVKELGVLRNRADGARSREEAFDGHMAIGRVLY-----EHQLFKEALVSFKRACELQPTDVRPHFRAGNCLYVL- 172 (660)
Q Consensus 99 ~~~g~~~~Al~~l~~a~~~~~~~~~~~~~~~~lg~~~~-----~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~- 172 (660)
.-+.+|++|...+...-+....+ ..-+.+|..++ ..++...|+..+..+-+. +.+.+-..+|.++..-
T Consensus 46 gi~knF~~A~kv~K~nCden~y~----kSCyKyG~y~~~GKgG~~~~l~~a~r~~~~aC~~--n~~~aC~~~gLl~~~g~ 119 (248)
T KOG4014|consen 46 GIQKNFQAAVKVFKKNCDENSYP----KSCYKYGMYMLAGKGGDDASLSKAIRPMKIACDA--NIPQACRYLGLLHWNGE 119 (248)
T ss_pred HHHHHHHHHHHHHHhcccccCCc----HHHHHhhhhhhcccCCCccCHHHHHHHHHHHhcc--CCHHHHhhhhhhhccCc
Confidence 34556777777776555443333 44555555544 356889999999988774 5678888888877643
Q ss_pred ----C--CHHHHHHHHHHHHHHhccCCCchhchHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCC--cHHHHHHHHHH
Q 006120 173 ----G--RYREAKEEYLLALEAAETGGNQWAYLLPQIYVNLGIALEGEGMVLSACEYYRESAILCPT--HFRALKLLGSA 244 (660)
Q Consensus 173 ----g--~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~--~~~~~~~lg~~ 244 (660)
+ +..+|+.++.++-.+. ...+.++|...++.-. ++ +....|. .+.. .+..
T Consensus 120 ~~r~~dpd~~Ka~~y~traCdl~----------~~~aCf~LS~m~~~g~--~k-------~~t~ap~~g~p~~---~~~~ 177 (248)
T KOG4014|consen 120 KDRKADPDSEKAERYMTRACDLE----------DGEACFLLSTMYMGGK--EK-------FKTNAPGEGKPLD---RAEL 177 (248)
T ss_pred CCccCCCCcHHHHHHHHHhccCC----------CchHHHHHHHHHhccc--hh-------hcccCCCCCCCcc---hhhh
Confidence 2 3678999999988776 3466777776665432 22 1112331 1211 2333
Q ss_pred HHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHh----CCChHHHHHHHHHHHHhC
Q 006120 245 LFGVGEYRAAVKALEEAIFIKPDYADAHCDLASALHA----MGEDERAIEVFQKAIDLK 299 (660)
Q Consensus 245 ~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~----~g~~~~A~~~~~~al~~~ 299 (660)
+.-..+.+.|.++..+|-++. ++.+..|+.+.|.. -.+.++|..+-.+|.++.
T Consensus 178 ~~~~kDMdka~qfa~kACel~--~~~aCAN~SrMyklGDGv~Kde~~Aekyk~rA~e~~ 234 (248)
T KOG4014|consen 178 GSLSKDMDKALQFAIKACELD--IPQACANVSRMYKLGDGVPKDEDQAEKYKDRAKEIM 234 (248)
T ss_pred hhhhHhHHHHHHHHHHHHhcC--ChHHHhhHHHHHHccCCCCccHHHHHHHHHHHHHHH
Confidence 444577888999988888874 57778888888753 346788888888887763
No 409
>TIGR03504 FimV_Cterm FimV C-terminal domain. This protein is found at the extreme C-terminus of FimV from Pseudomonas aeruginosa, and of TspA of Neisseria meningitidis. Disruption of the former blocks twitching motility from type IV pili; Semmler, et al. suggest a role in peptidoglycan layer remodelling required by type IV fimbrial systems.
Probab=77.46 E-value=5.8 Score=27.54 Aligned_cols=24 Identities=29% Similarity=0.666 Sum_probs=13.2
Q ss_pred HHHHHHHHHhcCCCHHHHHHHHHHHH
Q 006120 307 YNLGGLYMDLGAGETEEAKKALKEAL 332 (660)
Q Consensus 307 ~~La~~~~~~~~g~~~eA~~~~~~al 332 (660)
+.|+.+|..+ |+.+.|...+++.+
T Consensus 3 LdLA~ayie~--Gd~e~Ar~lL~evl 26 (44)
T TIGR03504 3 LDLARAYIEM--GDLEGARELLEEVI 26 (44)
T ss_pred hHHHHHHHHc--CChHHHHHHHHHHH
Confidence 3455555555 55555555555555
No 410
>KOG0546 consensus HSP90 co-chaperone CPR7/Cyclophilin [Posttranslational modification, protein turnover, chaperones]
Probab=77.05 E-value=3 Score=42.66 Aligned_cols=66 Identities=20% Similarity=0.123 Sum_probs=31.9
Q ss_pred HHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhCCChHHHHHHHHHHHHhCCCCHHHH
Q 006120 241 LGSALFGVGEYRAAVKALEEAIFIKPDYADAHCDLASALHAMGEDERAIEVFQKAIDLKPGHVDAL 306 (660)
Q Consensus 241 lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~a~ 306 (660)
++.+-.+.+.+..|+.....++..++....+++..+..+....++++|++.++.+....|++....
T Consensus 281 ~~~~~lk~~~~~~a~~~~~~~~~~~~s~tka~~Rr~~~~~~~~~~~~a~~~~~~a~~~~p~d~~i~ 346 (372)
T KOG0546|consen 281 LAAVGLKVKGRGGARFRTNEALRDERSKTKAHYRRGQAYKLLKNYDEALEDLKKAKQKAPNDKAIE 346 (372)
T ss_pred hHHhcccccCCCcceeccccccccChhhCcHHHHHHhHHHhhhchhhhHHHHHHhhccCcchHHHH
Confidence 444444444444444444444444444444555555555555555555555555555555444433
No 411
>PHA02537 M terminase endonuclease subunit; Provisional
Probab=76.77 E-value=32 Score=33.53 Aligned_cols=35 Identities=14% Similarity=0.257 Sum_probs=29.7
Q ss_pred CCHHHHHHHHHHHHcccCChhHHHHHHHHHHHHHH
Q 006120 319 GETEEAKKALKEALKMTNRVELHDAVSHLKQLQKK 353 (660)
Q Consensus 319 g~~~eA~~~~~~al~l~p~~~~~~~~~~l~~l~~~ 353 (660)
++...|..++++|++++|+......+..+....+.
T Consensus 192 ~~l~~Al~~L~rA~~l~~k~GVK~~i~~l~~~lr~ 226 (230)
T PHA02537 192 ETLQLALALLQRAFQLNDKCGVKKDIERLERRLKA 226 (230)
T ss_pred ccHHHHHHHHHHHHHhCCCCChHHHHHHHHHHHhh
Confidence 68889999999999999998888888777766654
No 412
>COG3014 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=76.56 E-value=60 Score=33.31 Aligned_cols=31 Identities=6% Similarity=-0.248 Sum_probs=23.8
Q ss_pred HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh
Q 006120 200 LPQIYVNLGIALEGEGMVLSACEYYRESAIL 230 (660)
Q Consensus 200 ~~~~~~~la~~~~~~g~~~~A~~~~~~al~~ 230 (660)
...+.+.+|.-|...++++.|.-.|+++...
T Consensus 124 ~~~~n~YkaLNYm~~nD~~~ArVEfnRan~r 154 (449)
T COG3014 124 GVLINYYKALNYMLLNDSAKARVEFNRANER 154 (449)
T ss_pred HHHHHHHHHhhHHHhcchhhhHHHHHHHHHH
Confidence 3456667788888888999998888887654
No 413
>KOG0686 consensus COP9 signalosome, subunit CSN1 [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=76.48 E-value=40 Score=35.43 Aligned_cols=89 Identities=12% Similarity=0.048 Sum_probs=61.2
Q ss_pred HHHHHHHHHHHHHHHHhhccCcHH---HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC---CHHHHHHHHHHHHHcC
Q 006120 100 DYAVFVKELGVLRNRADGARSREE---AFDGHMAIGRVLYEHQLFKEALVSFKRACELQPT---DVRPHFRAGNCLYVLG 173 (660)
Q Consensus 100 ~~g~~~~Al~~l~~a~~~~~~~~~---~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~---~~~~~~~la~~~~~~g 173 (660)
....+..-++.++.-++...++.. .-.++..+|..|...|+++.|+++|.++-..... ....+.++-.+-...|
T Consensus 122 ~~~~a~~~le~L~~eLk~yK~n~iKEsiRra~~Dl~dhy~~cG~l~~Alr~YsR~RdYCTs~khvInm~ln~i~VSI~~~ 201 (466)
T KOG0686|consen 122 NNKKAVLKLEKLDNELKSYKDNLIKESIRRALEDLGDHYLDCGQLDNALRCYSRARDYCTSAKHVINMCLNLILVSIYMG 201 (466)
T ss_pred hhHHHHHHHHHHHHHHHHhhcchhhHHHHHHHHHHHHHHHHhccHHHHHhhhhhhhhhhcchHHHHHHHHHHHHHHHhhc
Confidence 333444445555555554443321 1266888999999999999999999997665433 3456777777888889
Q ss_pred CHHHHHHHHHHHHHH
Q 006120 174 RYREAKEEYLLALEA 188 (660)
Q Consensus 174 ~~~~A~~~~~~al~~ 188 (660)
+|..-..+..+|...
T Consensus 202 nw~hv~sy~~~A~st 216 (466)
T KOG0686|consen 202 NWGHVLSYISKAEST 216 (466)
T ss_pred chhhhhhHHHHHHhC
Confidence 988877777777654
No 414
>PF09670 Cas_Cas02710: CRISPR-associated protein (Cas_Cas02710)
Probab=76.31 E-value=67 Score=34.13 Aligned_cols=64 Identities=14% Similarity=0.109 Sum_probs=47.3
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHhhccCcHHHHHHH--HHHHHHHHHcCCHHHHHHHHHHHHHh
Q 006120 90 KRVFWEESTHDYAVFVKELGVLRNRADGARSREEAFDGH--MAIGRVLYEHQLFKEALVSFKRACEL 154 (660)
Q Consensus 90 ~~~~l~~~~~~~g~~~~Al~~l~~a~~~~~~~~~~~~~~--~~lg~~~~~~g~~~~A~~~~~~al~~ 154 (660)
.....+....+.++|..|...+.......+.... +..+ ...|..++..-++++|.+.++..+..
T Consensus 133 ~~~~~a~~l~n~~~y~aA~~~l~~l~~rl~~~~~-~~~~~~l~~~y~~WD~fd~~~A~~~l~~~~~~ 198 (379)
T PF09670_consen 133 REWRRAKELFNRYDYGAAARILEELLRRLPGREE-YQRYKDLCEGYDAWDRFDHKEALEYLEKLLKR 198 (379)
T ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHhCCchhh-HHHHHHHHHHHHHHHccCHHHHHHHHHHHHHH
Confidence 3444455667889999999999999887444333 3344 34566678899999999999998775
No 415
>KOG0276 consensus Vesicle coat complex COPI, beta' subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=76.01 E-value=34 Score=37.75 Aligned_cols=79 Identities=15% Similarity=0.146 Sum_probs=58.3
Q ss_pred HHHHHHHHHHHHHHHHHHhhccCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHH
Q 006120 98 THDYAVFVKELGVLRNRADGARSREEAFDGHMAIGRVLYEHQLFKEALVSFKRACELQPTDVRPHFRAGNCLYVLGRYRE 177 (660)
Q Consensus 98 ~~~~g~~~~Al~~l~~a~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~ 177 (660)
......|.+.+...+++++..+++...++ +..+.|+++.|..+..++ ++..-|..||.+....+++..
T Consensus 617 rt~va~Fle~~g~~e~AL~~s~D~d~rFe-------lal~lgrl~iA~~la~e~-----~s~~Kw~~Lg~~al~~~~l~l 684 (794)
T KOG0276|consen 617 RTKVAHFLESQGMKEQALELSTDPDQRFE-------LALKLGRLDIAFDLAVEA-----NSEVKWRQLGDAALSAGELPL 684 (794)
T ss_pred hhhHHhHhhhccchHhhhhcCCChhhhhh-------hhhhcCcHHHHHHHHHhh-----cchHHHHHHHHHHhhcccchh
Confidence 34445666677777777777777765553 445667888877665443 567789999999999999999
Q ss_pred HHHHHHHHHHH
Q 006120 178 AKEEYLLALEA 188 (660)
Q Consensus 178 A~~~~~~al~~ 188 (660)
|.+++.++-.+
T Consensus 685 A~EC~~~a~d~ 695 (794)
T KOG0276|consen 685 ASECFLRARDL 695 (794)
T ss_pred HHHHHHhhcch
Confidence 99999887654
No 416
>PF04348 LppC: LppC putative lipoprotein; InterPro: IPR007443 This entry includes several bacterial outer membrane antigens, whose molecular function is unknown.; PDB: 3CKM_A.
Probab=74.71 E-value=0.97 Score=50.32 Aligned_cols=183 Identities=13% Similarity=0.044 Sum_probs=0.0
Q ss_pred HHHHHHHHHhhccCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH--hCCC-CHHHHHHHHHHHHHcCCHHHHHHHHH
Q 006120 107 ELGVLRNRADGARSREEAFDGHMAIGRVLYEHQLFKEALVSFKRACE--LQPT-DVRPHFRAGNCLYVLGRYREAKEEYL 183 (660)
Q Consensus 107 Al~~l~~a~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~--~~p~-~~~~~~~la~~~~~~g~~~~A~~~~~ 183 (660)
+.+.|.+..+.... +.....+...+..+...|++..|...+.+.-. +.+. ........|.+....|++++|+..+.
T Consensus 7 aA~~yL~~A~~a~~-~~~~~~~L~Aa~a~l~~g~~~~A~~ll~~l~~~~L~~~q~~~~~Ll~A~lal~~~~~~~Al~~L~ 85 (536)
T PF04348_consen 7 AAEQYLQQAQQASG-EQRAQLLLLAARALLQEGDWAQAQALLNQLDPQQLSPSQQARYQLLRARLALAQGDPEQALSLLN 85 (536)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HHHHHHHHHHhcCc-HhHHHHHHHHHHHHHhCCCHHHHHHHHHhcccccCChHHHHHHHHHHHHHHHhcCCHHHHHHHhc
Confidence 33334333333333 45556777888999999999999999987762 2332 34566677889999999999999887
Q ss_pred HHHHHhccCCCchhchHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCC-------cHHHHHHHHHHHHHCCCHHHHHH
Q 006120 184 LALEAAETGGNQWAYLLPQIYVNLGIALEGEGMVLSACEYYRESAILCPT-------HFRALKLLGSALFGVGEYRAAVK 256 (660)
Q Consensus 184 ~al~~~p~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~-------~~~~~~~lg~~~~~~g~~~~A~~ 256 (660)
. .....-... .....+...+.++...|++-+|...+-..-.+-++ ....|..|..+= ...
T Consensus 86 ~-~~~~~l~~~----~~~~~~~l~A~a~~~~~~~l~Aa~~~i~l~~lL~d~~~~~~N~~~iW~~L~~l~------~~~-- 152 (536)
T PF04348_consen 86 A-QDLWQLPPE----QQARYHQLRAQAYEQQGDPLAAARERIALDPLLPDPQERQENQDQIWQALSQLP------PEQ-- 152 (536)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred c-CCcccCCHH----HHHHHHHHHHHHHHhcCCHHHHHHHHHHHhhhcCChHHHHHHHHHHHHHHHcCC------HHH--
Confidence 5 111111111 14556677888898899888887766554443322 122333222211 111
Q ss_pred HHHHHHHhCCCCHHHHHHHHHHHHhC-CChHHHHHHHHHHHHhCCCCHH
Q 006120 257 ALEEAIFIKPDYADAHCDLASALHAM-GEDERAIEVFQKAIDLKPGHVD 304 (660)
Q Consensus 257 ~~~~al~~~p~~~~~~~~la~~~~~~-g~~~~A~~~~~~al~~~p~~~~ 304 (660)
+.............|..|+.++... .+...=...++.-....|+++-
T Consensus 153 -L~~~~~~~~~~l~GWl~La~i~~~~~~~p~~l~~al~~Wq~~yP~HPA 200 (536)
T PF04348_consen 153 -LQQLRRASEPDLQGWLELALIYRQYQQDPAQLKQALNQWQQRYPNHPA 200 (536)
T ss_dssp -------------------------------------------------
T ss_pred -HHhhhcCCCHHHHHHHHHHHHHHhccCCHHHHHHHHHHHHHhCcCCcc
Confidence 1222222333456788888888763 3333223333333344555543
No 417
>COG3947 Response regulator containing CheY-like receiver and SARP domains [Signal transduction mechanisms]
Probab=71.76 E-value=45 Score=33.49 Aligned_cols=53 Identities=23% Similarity=0.139 Sum_probs=25.8
Q ss_pred HHHHHHCCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHCCCHHHHHHHHHH
Q 006120 208 GIALEGEGMVLSACEYYRESAILCPTHFRALKLLGSALFGVGEYRAAVKALEE 260 (660)
Q Consensus 208 a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~ 260 (660)
+..|...|.+.+|+++.++++.++|-+...+..+-.++...|+--.|...|++
T Consensus 286 a~~yle~g~~neAi~l~qr~ltldpL~e~~nk~lm~~la~~gD~is~~khyer 338 (361)
T COG3947 286 ARAYLEAGKPNEAIQLHQRALTLDPLSEQDNKGLMASLATLGDEISAIKHYER 338 (361)
T ss_pred HHHHHHcCChHHHHHHHHHHhhcChhhhHHHHHHHHHHHHhccchhhhhHHHH
Confidence 34444455555555555555555555555555555555555544444444433
No 418
>COG4455 ImpE Protein of avirulence locus involved in temperature-dependent protein secretion [General function prediction only]
Probab=71.76 E-value=99 Score=29.85 Aligned_cols=96 Identities=23% Similarity=0.203 Sum_probs=77.2
Q ss_pred HHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhCCChHHHHHHHHHHHHhCCCCH---HHHHHHHHHHHHh--
Q 006120 242 GSALFGVGEYRAAVKALEEAIFIKPDYADAHCDLASALHAMGEDERAIEVFQKAIDLKPGHV---DALYNLGGLYMDL-- 316 (660)
Q Consensus 242 g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~---~a~~~La~~~~~~-- 316 (660)
..-+.+.+...+|+...+.-++-+|.+......+-.+|.-.|+|++|...++-+-++.|++. ..|.++..+....
T Consensus 8 ~seLL~~~sL~dai~~a~~qVkakPtda~~RhflfqLlcvaGdw~kAl~Ql~l~a~l~p~~t~~a~lyr~lir~ea~R~e 87 (273)
T COG4455 8 ISELLDDNSLQDAIGLARDQVKAKPTDAGGRHFLFQLLCVAGDWEKALAQLNLAATLSPQDTVGASLYRHLIRCEAARNE 87 (273)
T ss_pred HHHHHHhccHHHHHHHHHHHHhcCCccccchhHHHHHHhhcchHHHHHHHHHHHhhcCcccchHHHHHHHHHHHHHHHHH
Confidence 34567789999999999999999999999999999999999999999999999999999873 4555555443322
Q ss_pred ---c-------CCCHHHHHHHHHHHHcccCC
Q 006120 317 ---G-------AGETEEAKKALKEALKMTNR 337 (660)
Q Consensus 317 ---~-------~g~~~eA~~~~~~al~l~p~ 337 (660)
+ -|...+=+..+..++.+..+
T Consensus 88 vfag~~~Pgflg~p~p~wva~L~aala~h~d 118 (273)
T COG4455 88 VFAGGAVPGFLGGPSPEWVAALLAALALHSD 118 (273)
T ss_pred HhccCCCCCCcCCCCHHHHHHHHHHHhcccC
Confidence 0 14677778888888888755
No 419
>KOG0546 consensus HSP90 co-chaperone CPR7/Cyclophilin [Posttranslational modification, protein turnover, chaperones]
Probab=70.69 E-value=6 Score=40.51 Aligned_cols=120 Identities=16% Similarity=0.045 Sum_probs=87.6
Q ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhCC
Q 006120 204 YVNLGIALEGEGMVLSACEYYRESAILCPTHFRALKLLGSALFGVGEYRAAVKALEEAIFIKPDYADAHCDLASALHAMG 283 (660)
Q Consensus 204 ~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g 283 (660)
.-..+.-..+.+++..|..-+.+++..-... ...+-.+... +...+...-.....+++.+-.+.+
T Consensus 225 ~k~~~~~~~kk~~~~~a~~k~~k~~r~~~~~------------s~~~~~e~~~---~~~~~~~~r~~~~~n~~~~~lk~~ 289 (372)
T KOG0546|consen 225 KKNIGNKEFKKQRYREALAKYRKALRYLSEQ------------SRDREKEQEN---RIPPLRELRFSIRRNLAAVGLKVK 289 (372)
T ss_pred hhccchhhhhhccHhHHHHHHHHHhhhhccc------------cccccccccc---ccccccccccccccchHHhccccc
Confidence 3345566788899999999988887642210 0000011111 111222333455667899999999
Q ss_pred ChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHcccCChhH
Q 006120 284 EDERAIEVFQKAIDLKPGHVDALYNLGGLYMDLGAGETEEAKKALKEALKMTNRVEL 340 (660)
Q Consensus 284 ~~~~A~~~~~~al~~~p~~~~a~~~La~~~~~~~~g~~~eA~~~~~~al~l~p~~~~ 340 (660)
.+..|+.....++..+++...+++..+..+..+ .++++|++.++.+....|+...
T Consensus 290 ~~~~a~~~~~~~~~~~~s~tka~~Rr~~~~~~~--~~~~~a~~~~~~a~~~~p~d~~ 344 (372)
T KOG0546|consen 290 GRGGARFRTNEALRDERSKTKAHYRRGQAYKLL--KNYDEALEDLKKAKQKAPNDKA 344 (372)
T ss_pred CCCcceeccccccccChhhCcHHHHHHhHHHhh--hchhhhHHHHHHhhccCcchHH
Confidence 999999999999999999999999999999998 9999999999999999997543
No 420
>smart00386 HAT HAT (Half-A-TPR) repeats. Present in several RNA-binding proteins. Structurally and sequentially thought to be similar to TPRs.
Probab=70.52 E-value=12 Score=23.09 Aligned_cols=23 Identities=22% Similarity=0.125 Sum_probs=9.3
Q ss_pred HHHHHHHHHHHHhCCCCHHHHHH
Q 006120 252 RAAVKALEEAIFIKPDYADAHCD 274 (660)
Q Consensus 252 ~~A~~~~~~al~~~p~~~~~~~~ 274 (660)
+.|...|++++...|.++..|..
T Consensus 4 ~~~r~i~e~~l~~~~~~~~~W~~ 26 (33)
T smart00386 4 ERARKIYERALEKFPKSVELWLK 26 (33)
T ss_pred HHHHHHHHHHHHHCCCChHHHHH
Confidence 33444444444444444444333
No 421
>COG3947 Response regulator containing CheY-like receiver and SARP domains [Signal transduction mechanisms]
Probab=70.20 E-value=22 Score=35.55 Aligned_cols=62 Identities=23% Similarity=0.119 Sum_probs=54.4
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Q 006120 127 GHMAIGRVLYEHQLFKEALVSFKRACELQPTDVRPHFRAGNCLYVLGRYREAKEEYLLALEA 188 (660)
Q Consensus 127 ~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~ 188 (660)
.+...+..|...|.+.+|+.+.++++..+|-+...+..+-.++...|+--.+.+.|++.-+.
T Consensus 281 llgkva~~yle~g~~neAi~l~qr~ltldpL~e~~nk~lm~~la~~gD~is~~khyerya~v 342 (361)
T COG3947 281 LLGKVARAYLEAGKPNEAIQLHQRALTLDPLSEQDNKGLMASLATLGDEISAIKHYERYAEV 342 (361)
T ss_pred HHHHHHHHHHHcCChHHHHHHHHHHhhcChhhhHHHHHHHHHHHHhccchhhhhHHHHHHHH
Confidence 34556788899999999999999999999999999999999999999999999888876543
No 422
>PF10255 Paf67: RNA polymerase I-associated factor PAF67; InterPro: IPR019382 RNA polymerase I is a multi-subunit enzyme and its transcription competence is dependent on the presence of PAF67 [].
Probab=70.04 E-value=1.6e+02 Score=31.49 Aligned_cols=62 Identities=15% Similarity=0.111 Sum_probs=48.9
Q ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHHh---------CCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh
Q 006120 202 QIYVNLGIALEGEGMVLSACEYYRESAIL---------CPTHFRALKLLGSALFGVGEYRAAVKALEEAIFI 264 (660)
Q Consensus 202 ~~~~~la~~~~~~g~~~~A~~~~~~al~~---------~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~ 264 (660)
-+...|..++.-+|+|..|++.++.. ++ .+-+...++..|-+|..+++|.+|+..|...+..
T Consensus 123 FSligLlRvh~LLGDY~~Alk~l~~i-dl~~~~l~~~V~~~~is~~YyvGFaylMlrRY~DAir~f~~iL~y 193 (404)
T PF10255_consen 123 FSLIGLLRVHCLLGDYYQALKVLENI-DLNKKGLYTKVPACHISTYYYVGFAYLMLRRYADAIRTFSQILLY 193 (404)
T ss_pred HHHHHHHHHHHhccCHHHHHHHhhcc-CcccchhhccCcchheehHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 35566778888999999999987653 11 2234567889999999999999999999987754
No 423
>KOG0686 consensus COP9 signalosome, subunit CSN1 [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=69.68 E-value=73 Score=33.55 Aligned_cols=97 Identities=15% Similarity=0.101 Sum_probs=71.2
Q ss_pred HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCc---HHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCC--------CC
Q 006120 200 LPQIYVNLGIALEGEGMVLSACEYYRESAILCPTH---FRALKLLGSALFGVGEYRAAVKALEEAIFIKP--------DY 268 (660)
Q Consensus 200 ~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~---~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p--------~~ 268 (660)
...++..+|.-|...|+++.|+..|-++-...... ...+.++-.+-...|+|..-..+..+|...-. -.
T Consensus 149 iRra~~Dl~dhy~~cG~l~~Alr~YsR~RdYCTs~khvInm~ln~i~VSI~~~nw~hv~sy~~~A~st~~~~~~~~q~v~ 228 (466)
T KOG0686|consen 149 IRRALEDLGDHYLDCGQLDNALRCYSRARDYCTSAKHVINMCLNLILVSIYMGNWGHVLSYISKAESTPDANENLAQEVP 228 (466)
T ss_pred HHHHHHHHHHHHHHhccHHHHHhhhhhhhhhhcchHHHHHHHHHHHHHHHhhcchhhhhhHHHHHHhCchhhhhHHHhcC
Confidence 56788999999999999999999999976654332 55677788888888999887777777765510 01
Q ss_pred HHHHHHHHHHHHhCCChHHHHHHHHHHH
Q 006120 269 ADAHCDLASALHAMGEDERAIEVFQKAI 296 (660)
Q Consensus 269 ~~~~~~la~~~~~~g~~~~A~~~~~~al 296 (660)
+.+...-|.+...+++|..|..++-.+.
T Consensus 229 ~kl~C~agLa~L~lkkyk~aa~~fL~~~ 256 (466)
T KOG0686|consen 229 AKLKCAAGLANLLLKKYKSAAKYFLLAE 256 (466)
T ss_pred cchHHHHHHHHHHHHHHHHHHHHHHhCC
Confidence 2345555666667778999988886654
No 424
>PF00244 14-3-3: 14-3-3 protein; InterPro: IPR023410 The 14-3-3 proteins are a large family of approximately 30kDa acidic proteins which exist primarily as homo- and heterodimeric within all eukaryotic cells [, ]. There is a high degree of sequence identity and conservation between all the 14-3-3 isotypes, particularly in the regions which form the dimer interface or line the central ligand binding channel of the dimeric molecule. Each 14-3-3 protein sequence can be roughly divided into three sections: a divergent amino terminus, the conserved core region and a divergent carboxyl terminus. The conserved middle core region of the 14-3-3s encodes an amphipathic groove that forms the main functional domain, a cradle for interacting with client proteins. The monomer consists of nine helices organised in an antiparallel manner, forming an L-shaped structure. The interior of the L-structure is composed of four helices: H3 and H5, which contain many charged and polar amino acids, and H7 and H9, which contain hydrophobic amino acids. These four helices form the concave amphipathic groove that interacts with target peptides. 14-3-3 proteins mainly bind proteins containing phosphothreonine or phosphoserine motifs however exceptions to this rule do exist. Extensive investigation of the 14-3-3 binding site of the mammalian serine/threonine kinase Raf-1 has produced a consensus sequence for 14-3-3-binding, RSxpSxP (in the single-letter amino-acid code, where x denotes any amino acid and p indicates that the next residue is phosphorylated). 14-3-3 proteins appear to effect intracellular signalling in one of three ways - by direct regulation of the catalytic activity of the bound protein, by regulating interactions between the bound protein and other molecules in the cell by sequestration or modification or by controlling the subcellular localisation of the bound ligand. Proteins appear to initially bind to a single dominant site and then subsequently to many, much weaker secondary interaction sites. The 14-3-3 dimer is capable of changing the conformation of its bound ligand whilst itself undergoing minimal structural alteration. This entry represents the structural domain found in 14-3-3 proteins.; PDB: 2O8P_A 3AXY_D 2C74_A 2C63_A 4DX0_A 1YWT_A 3P1O_A 3P1N_A 4DAU_A 3U9X_A ....
Probab=68.46 E-value=34 Score=33.65 Aligned_cols=165 Identities=13% Similarity=0.082 Sum_probs=80.8
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHhccCCCchhchHHHHHHHHHHHHH-HCCCHHHHHHHHHHHHHhCCCcH-HHHH
Q 006120 162 HFRAGNCLYVLGRYREAKEEYLLALEAAETGGNQWAYLLPQIYVNLGIALE-GEGMVLSACEYYRESAILCPTHF-RALK 239 (660)
Q Consensus 162 ~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~la~~~~-~~g~~~~A~~~~~~al~~~p~~~-~~~~ 239 (660)
+..+|.+..+.|+|++...++++++..++..... -...++.+|- ..|....++..+........... ....
T Consensus 4 li~~Aklaeq~eRy~dmv~~mk~~~~~~~eLt~e-------ERnLlsvayKn~i~~~R~s~R~l~~~e~~~~~~~~~~~~ 76 (236)
T PF00244_consen 4 LIYLAKLAEQAERYDDMVEYMKQLIEMNPELTEE-------ERNLLSVAYKNVIGSRRASWRILSSIEQKEENKGNEKQV 76 (236)
T ss_dssp HHHHHHHHHHTTHHHHHHHHHHHHHHTSS---HH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTTHHHH
T ss_pred HHHHHHHHHHhcCHHHHHHHHHHHHccCCCCCHH-------HHHHHHHHHHhccccchHHHHhhhhHhhhhcccchhHHH
Confidence 5678899999999999999999999997764332 2233333331 12333344444433333222110 1111
Q ss_pred HHHHHHHHC------CCHHHHHHHHHHHHHhCCCCHH----HHHHHHHHHHh-----CC-----ChHHHHHHHHHHHHh-
Q 006120 240 LLGSALFGV------GEYRAAVKALEEAIFIKPDYAD----AHCDLASALHA-----MG-----EDERAIEVFQKAIDL- 298 (660)
Q Consensus 240 ~lg~~~~~~------g~~~~A~~~~~~al~~~p~~~~----~~~~la~~~~~-----~g-----~~~~A~~~~~~al~~- 298 (660)
.+..-|... .--.+.+......+--...+.. .+-..|..|.. .| -.+.|...|++|+.+
T Consensus 77 ~~i~~yk~kie~EL~~~C~eii~lId~~Lip~~~~~eskvfy~KmkgDyyRYlaE~~~~~~~~~~~~~a~~aY~~A~~~a 156 (236)
T PF00244_consen 77 KLIKDYKKKIEDELIDICNEIIRLIDKSLIPSATSPESKVFYYKMKGDYYRYLAEFDSGDEKKEAAEKALEAYEEALEIA 156 (236)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHTCHHHS-SHHHHHHHHHHHHHHHHHHHHCTTHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccchhHHHHHHHHhccccccccccccchhhHHHHHHHHHhhhhHHHHH
Confidence 111111100 0011222222222111112221 12223444331 11 236788888888765
Q ss_pred ----CCCCHH---HHHHHHHHHHHhcCCCHHHHHHHHHHHHcc
Q 006120 299 ----KPGHVD---ALYNLGGLYMDLGAGETEEAKKALKEALKM 334 (660)
Q Consensus 299 ----~p~~~~---a~~~La~~~~~~~~g~~~eA~~~~~~al~l 334 (660)
.|.+|. ...+.+..|... .|+.++|....++++..
T Consensus 157 ~~~L~~~~p~rLgl~LN~svF~yei-~~~~~~A~~ia~~afd~ 198 (236)
T PF00244_consen 157 KKELPPTHPLRLGLALNYSVFYYEI-LNDPEKAIEIAKQAFDE 198 (236)
T ss_dssp HHHSCTTSHHHHHHHHHHHHHHHHT-SS-HHHHHHHHHHHHHH
T ss_pred hcccCCCCcHHHHHHHHHHHHHHHH-cCChHHHHHHHHHHHHH
Confidence 566653 455666666553 29999999988888754
No 425
>KOG2114 consensus Vacuolar assembly/sorting protein PEP5/VPS11 [Intracellular trafficking, secretion, and vesicular transport]
Probab=67.94 E-value=78 Score=36.46 Aligned_cols=204 Identities=12% Similarity=0.051 Sum_probs=109.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhccCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCC
Q 006120 96 ESTHDYAVFVKELGVLRNRADGARSREEAFDGHMAIGRVLYEHQLFKEALVSFKRACELQ-PTDVRPHFRAGNCLYVLGR 174 (660)
Q Consensus 96 ~~~~~~g~~~~Al~~l~~a~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~la~~~~~~g~ 174 (660)
.+......|.-|+...+.. ..+.......+...|..++.+|++++|...|-+.+..- |. .+. .-+....+
T Consensus 342 ~iL~kK~ly~~Ai~LAk~~---~~d~d~~~~i~~kYgd~Ly~Kgdf~~A~~qYI~tI~~le~s--~Vi----~kfLdaq~ 412 (933)
T KOG2114|consen 342 DILFKKNLYKVAINLAKSQ---HLDEDTLAEIHRKYGDYLYGKGDFDEATDQYIETIGFLEPS--EVI----KKFLDAQR 412 (933)
T ss_pred HHHHHhhhHHHHHHHHHhc---CCCHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHcccCChH--HHH----HHhcCHHH
Confidence 4555555666666554422 22344445677788888888999999988888887643 22 111 11123333
Q ss_pred HHHHHHHHHHHHHHhccCCCchhchHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCcHHHH---HHHHHHHHHCCCH
Q 006120 175 YREAKEEYLLALEAAETGGNQWAYLLPQIYVNLGIALEGEGMVLSACEYYRESAILCPTHFRAL---KLLGSALFGVGEY 251 (660)
Q Consensus 175 ~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~---~~lg~~~~~~g~~ 251 (660)
..+-..+++...+..-. ...-...|-.+|.++++.++-.++.++. + ..... -..-.++.+.+-+
T Consensus 413 IknLt~YLe~L~~~gla--------~~dhttlLLncYiKlkd~~kL~efI~~~----~-~g~~~fd~e~al~Ilr~snyl 479 (933)
T KOG2114|consen 413 IKNLTSYLEALHKKGLA--------NSDHTTLLLNCYIKLKDVEKLTEFISKC----D-KGEWFFDVETALEILRKSNYL 479 (933)
T ss_pred HHHHHHHHHHHHHcccc--------cchhHHHHHHHHHHhcchHHHHHHHhcC----C-CcceeeeHHHHHHHHHHhChH
Confidence 33444444444443333 2222334556788888877766665543 2 11110 0111233344444
Q ss_pred HHHHHHHHHHHHhCCCCHHHHHHHHHHHHhCCChHHHHHHHHHHHHhCCCC-HHHHHHHHHHHHHhcCCCHHHHHHHHHH
Q 006120 252 RAAVKALEEAIFIKPDYADAHCDLASALHAMGEDERAIEVFQKAIDLKPGH-VDALYNLGGLYMDLGAGETEEAKKALKE 330 (660)
Q Consensus 252 ~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~-~~a~~~La~~~~~~~~g~~~eA~~~~~~ 330 (660)
++|.-...+.- .+ -..+-.++..+++|++|+.++... .|.. .......|..+... .+++-...+-+
T Consensus 480 ~~a~~LA~k~~----~h---e~vl~ille~~~ny~eAl~yi~sl---p~~e~l~~l~kyGk~Ll~h---~P~~t~~ili~ 546 (933)
T KOG2114|consen 480 DEAELLATKFK----KH---EWVLDILLEDLHNYEEALRYISSL---PISELLRTLNKYGKILLEH---DPEETMKILIE 546 (933)
T ss_pred HHHHHHHHHhc----cC---HHHHHHHHHHhcCHHHHHHHHhcC---CHHHHHHHHHHHHHHHHhh---ChHHHHHHHHH
Confidence 44443333221 11 122345667789999999988653 3332 34566677777764 67776666666
Q ss_pred HHcc
Q 006120 331 ALKM 334 (660)
Q Consensus 331 al~l 334 (660)
....
T Consensus 547 ~~t~ 550 (933)
T KOG2114|consen 547 LITE 550 (933)
T ss_pred HHhh
Confidence 5544
No 426
>PF04190 DUF410: Protein of unknown function (DUF410) ; InterPro: IPR007317 This is a family of conserved eukaryotic proteins with undetermined function.; PDB: 3LKU_E 2WPV_G.
Probab=67.44 E-value=1.4e+02 Score=29.85 Aligned_cols=27 Identities=22% Similarity=0.266 Sum_probs=18.6
Q ss_pred CcHHHHHHHHHHHHHCCCHHHHHHHHH
Q 006120 233 THFRALKLLGSALFGVGEYRAAVKALE 259 (660)
Q Consensus 233 ~~~~~~~~lg~~~~~~g~~~~A~~~~~ 259 (660)
.++..+..+|..+.+.|++.+|..+|-
T Consensus 88 Gdp~LH~~~a~~~~~e~~~~~A~~Hfl 114 (260)
T PF04190_consen 88 GDPELHHLLAEKLWKEGNYYEAERHFL 114 (260)
T ss_dssp --HHHHHHHHHHHHHTT-HHHHHHHHH
T ss_pred CCHHHHHHHHHHHHhhccHHHHHHHHH
Confidence 357778888888888888877776664
No 427
>smart00386 HAT HAT (Half-A-TPR) repeats. Present in several RNA-binding proteins. Structurally and sequentially thought to be similar to TPRs.
Probab=67.43 E-value=14 Score=22.65 Aligned_cols=31 Identities=13% Similarity=0.054 Sum_probs=26.5
Q ss_pred CCHHHHHHHHHHHHHhCCCcHHHHHHHHHHH
Q 006120 215 GMVLSACEYYRESAILCPTHFRALKLLGSAL 245 (660)
Q Consensus 215 g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~ 245 (660)
|+.+.|...|++++...|.+...|...+...
T Consensus 1 ~~~~~~r~i~e~~l~~~~~~~~~W~~y~~~e 31 (33)
T smart00386 1 GDIERARKIYERALEKFPKSVELWLKYAEFE 31 (33)
T ss_pred CcHHHHHHHHHHHHHHCCCChHHHHHHHHHH
Confidence 5678999999999999999999998776543
No 428
>PRK11619 lytic murein transglycosylase; Provisional
Probab=65.93 E-value=2.5e+02 Score=32.24 Aligned_cols=123 Identities=11% Similarity=0.012 Sum_probs=79.6
Q ss_pred HHHHHHCCCHHHHHHHHHHHHHhCCCc----HHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhCC
Q 006120 208 GIALEGEGMVLSACEYYRESAILCPTH----FRALKLLGSALFGVGEYRAAVKALEEAIFIKPDYADAHCDLASALHAMG 283 (660)
Q Consensus 208 a~~~~~~g~~~~A~~~~~~al~~~p~~----~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g 283 (660)
+..-....+.+.|...+.+......-. ..++..+|.-....+..++|...+..+..... +...+-....+....+
T Consensus 248 ~l~Rlar~d~~~A~~~~~~~~~~~~~~~~~~~~~~~~lA~~~a~~~~~~~a~~w~~~~~~~~~-~~~~~e~r~r~Al~~~ 326 (644)
T PRK11619 248 AFASVARQDAENARLMIPSLVRAQKLNEDQRQELRDIVAWRLMGNDVTDEQAKWRDDVIMRSQ-STSLLERRVRMALGTG 326 (644)
T ss_pred HHHHHHHhCHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHhccCCHHHHHHHHhcccccC-CcHHHHHHHHHHHHcc
Confidence 333445566778888887654443322 22344455444444335677777776554332 3333444444555888
Q ss_pred ChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHc
Q 006120 284 EDERAIEVFQKAIDLKPGHVDALYNLGGLYMDLGAGETEEAKKALKEALK 333 (660)
Q Consensus 284 ~~~~A~~~~~~al~~~p~~~~a~~~La~~~~~~~~g~~~eA~~~~~~al~ 333 (660)
+++.+...+...-....+.....+.+|.++..+ |+.++|..+|+++..
T Consensus 327 dw~~~~~~i~~L~~~~~~~~rw~YW~aRa~~~~--g~~~~A~~~~~~~a~ 374 (644)
T PRK11619 327 DRRGLNTWLARLPMEAKEKDEWRYWQADLLLEQ--GRKAEAEEILRQLMQ 374 (644)
T ss_pred CHHHHHHHHHhcCHhhccCHhhHHHHHHHHHHc--CCHHHHHHHHHHHhc
Confidence 998888777775444445678999999999888 999999999999854
No 429
>PF12739 TRAPPC-Trs85: ER-Golgi trafficking TRAPP I complex 85 kDa subunit; InterPro: IPR024420 This entry represents Trs85, a subunit of the TRAPP III complex []. Trs85 is a multimeric guanine nucleotide-exchange factor for Ypt1, required for membrane expansion during autophagy and the CVT pathway. It directs Ypt1 to the phagophore assembly site [, , , ].
Probab=65.24 E-value=2e+02 Score=30.93 Aligned_cols=159 Identities=11% Similarity=0.054 Sum_probs=96.3
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC------HHHHHHHHHHHHHcCCH-------HHHHHHHHHHHHHhccCCC
Q 006120 128 HMAIGRVLYEHQLFKEALVSFKRACELQPTD------VRPHFRAGNCLYVLGRY-------REAKEEYLLALEAAETGGN 194 (660)
Q Consensus 128 ~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~------~~~~~~la~~~~~~g~~-------~~A~~~~~~al~~~p~~~~ 194 (660)
...+|..++..++|+-|...|+.+.+-..++ +.+.-..|.++...+.. ++...+++.|+...-....
T Consensus 211 ~R~LAD~aFml~Dy~~A~s~Y~~~k~Df~~Dkaw~~~A~~~Em~alsl~~~~~~~~~k~~~~~~~~~le~A~~~Y~~~~~ 290 (414)
T PF12739_consen 211 MRRLADLAFMLRDYELAYSTYRLLKKDFKNDKAWKYLAGAQEMAALSLLMQGQSISAKIRKDEIEPYLENAYYTYLKSAL 290 (414)
T ss_pred HHHHHHHHHHHccHHHHHHHHHHHHHHHhhchhHHHHHhHHHHHHHHHHhcCCCCccccccccHHHHHHHHHHHHHhhhc
Confidence 4569999999999999999999888754332 23344445555555533 3566666666655433100
Q ss_pred ---chhchHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh--CCCc-----HHHHHHHHHHHHHCCCHHHHHHHHHHHHHh
Q 006120 195 ---QWAYLLPQIYVNLGIALEGEGMVLSACEYYRESAIL--CPTH-----FRALKLLGSALFGVGEYRAAVKALEEAIFI 264 (660)
Q Consensus 195 ---~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~--~p~~-----~~~~~~lg~~~~~~g~~~~A~~~~~~al~~ 264 (660)
........+....+.++...+.+.+|...+-+.... ..+. +-.+-..|.++ ..+..
T Consensus 291 ~~~~~~~~a~R~~ll~~ell~~~~~~~~a~~~~~~~~~~~l~~~l~~~~~alllE~~a~~~--------------~~~~~ 356 (414)
T PF12739_consen 291 PRCSLPYYALRCALLLAELLKSRGGYWEAADQLIRWTSEILESDLRPFGSALLLEQAAYCY--------------ASLRS 356 (414)
T ss_pred cccccccchHHHHHHHHHHHHhcCccHHHHHHHHHHHHHHHhhhhhhHhhHHHHHHHHHhh--------------ccccc
Confidence 000014556777788888899988887776666544 2221 22333334443 11111
Q ss_pred -CC--C-----CHHHHH-HHHHHHHhCCChHHHHHHHHHHHHhCC
Q 006120 265 -KP--D-----YADAHC-DLASALHAMGEDERAIEVFQKAIDLKP 300 (660)
Q Consensus 265 -~p--~-----~~~~~~-~la~~~~~~g~~~~A~~~~~~al~~~p 300 (660)
.| . ....|. .-|.-|.+.|+...|+.+|.+++....
T Consensus 357 ~~~~~~~~r~RK~af~~vLAg~~~~~~~~~~~a~rcy~~a~~vY~ 401 (414)
T PF12739_consen 357 NRPSPGLTRFRKYAFHMVLAGHRYSKAGQKKHALRCYKQALQVYE 401 (414)
T ss_pred CCCCccchhhHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHhC
Confidence 11 1 112233 345788999999999999999988743
No 430
>COG5187 RPN7 26S proteasome regulatory complex component, contains PCI domain [Posttranslational modification, protein turnover, chaperones]
Probab=64.27 E-value=1.2e+02 Score=30.54 Aligned_cols=138 Identities=17% Similarity=0.076 Sum_probs=87.6
Q ss_pred hHHHHhccCchhhHHHHHHHHHHHHhhccCCcCCchHHhhhHHHHHHhCCchHHHHhHHHHHHHHHHHHHHHHHHHHHHH
Q 006120 34 GIVFDDTWKIVDDLEILVKRLKAKQAKDGKLKGDNSDAFSDAGWSRELGTSAEISEKRVFWEESTHDYAVFVKELGVLRN 113 (660)
Q Consensus 34 g~~y~~~~~~~~al~~~~~~~~~a~~~~~~l~~~~~~a~~~~~~~~~l~~~~~~~~~~~~l~~~~~~~g~~~~Al~~l~~ 113 (660)
|....-....++-++.+.+.++.+.+- ....+..++...+++.|.+.++.+.+.+.+.+
T Consensus 82 ~~~n~l~kkneeki~Elde~i~~~eed---------------------ngE~e~~ea~~n~aeyY~qi~D~~ng~~~~~~ 140 (412)
T COG5187 82 GRMNTLLKKNEEKIEELDERIREKEED---------------------NGETEGSEADRNIAEYYCQIMDIQNGFEWMRR 140 (412)
T ss_pred HHHHHHHHhhHHHHHHHHHHHHHHhhc---------------------ccchHHHHHHHHHHHHHHHHhhhhhHHHHHHH
Confidence 333333344566777777766662221 12234456666778888888888888888888
Q ss_pred HHhhccCcHHHHHHH---HHHHHHHHHcCCHHHHHHHHHHHHHhCCCC---HHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 006120 114 RADGARSREEAFDGH---MAIGRVLYEHQLFKEALVSFKRACELQPTD---VRPHFRAGNCLYVLGRYREAKEEYLLALE 187 (660)
Q Consensus 114 a~~~~~~~~~~~~~~---~~lg~~~~~~g~~~~A~~~~~~al~~~p~~---~~~~~~la~~~~~~g~~~~A~~~~~~al~ 187 (660)
.....-...-.++.+ ..+|.+|-.+.-.++.++.....++..-+. ...-...|.......++.+|..++-..+.
T Consensus 141 ~~~~a~stg~KiDv~l~kiRlg~~y~d~~vV~e~lE~~~~~iEkGgDWeRrNRyK~Y~Gi~~m~~RnFkeAa~Ll~d~l~ 220 (412)
T COG5187 141 LMRDAMSTGLKIDVFLCKIRLGLIYGDRKVVEESLEVADDIIEKGGDWERRNRYKVYKGIFKMMRRNFKEAAILLSDILP 220 (412)
T ss_pred HHHHHHhcccchhhHHHHHHHHHhhccHHHHHHHHHHHHHHHHhCCCHHhhhhHHHHHHHHHHHHHhhHHHHHHHHHHhc
Confidence 777665444344443 455666666555667777777777765432 23344556677778888999888888776
Q ss_pred HhccC
Q 006120 188 AAETG 192 (660)
Q Consensus 188 ~~p~~ 192 (660)
.....
T Consensus 221 tF~S~ 225 (412)
T COG5187 221 TFESS 225 (412)
T ss_pred ccccc
Confidence 65543
No 431
>TIGR03504 FimV_Cterm FimV C-terminal domain. This protein is found at the extreme C-terminus of FimV from Pseudomonas aeruginosa, and of TspA of Neisseria meningitidis. Disruption of the former blocks twitching motility from type IV pili; Semmler, et al. suggest a role in peptidoglycan layer remodelling required by type IV fimbrial systems.
Probab=64.15 E-value=12 Score=25.90 Aligned_cols=25 Identities=40% Similarity=0.519 Sum_probs=22.7
Q ss_pred HHHHHHHHhCCChHHHHHHHHHHHH
Q 006120 273 CDLASALHAMGEDERAIEVFQKAID 297 (660)
Q Consensus 273 ~~la~~~~~~g~~~~A~~~~~~al~ 297 (660)
+.+|.+|..+|+.+.|...+++.+.
T Consensus 3 LdLA~ayie~Gd~e~Ar~lL~evl~ 27 (44)
T TIGR03504 3 LDLARAYIEMGDLEGARELLEEVIE 27 (44)
T ss_pred hHHHHHHHHcCChHHHHHHHHHHHH
Confidence 5789999999999999999999985
No 432
>PRK11619 lytic murein transglycosylase; Provisional
Probab=64.12 E-value=2.7e+02 Score=31.99 Aligned_cols=185 Identities=10% Similarity=-0.067 Sum_probs=106.5
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhccCCCchhchHHHHHHH
Q 006120 127 GHMAIGRVLYEHQLFKEALVSFKRACELQPTDVRPHFRAGNCLYVLGRYREAKEEYLLALEAAETGGNQWAYLLPQIYVN 206 (660)
Q Consensus 127 ~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~ 206 (660)
++..+|......+...+|...+..+..... +....-....+....++++.....+...-..... .....+-
T Consensus 281 ~~~~lA~~~a~~~~~~~a~~w~~~~~~~~~-~~~~~e~r~r~Al~~~dw~~~~~~i~~L~~~~~~--------~~rw~YW 351 (644)
T PRK11619 281 LRDIVAWRLMGNDVTDEQAKWRDDVIMRSQ-STSLLERRVRMALGTGDRRGLNTWLARLPMEAKE--------KDEWRYW 351 (644)
T ss_pred HHHHHHHHHHhccCCHHHHHHHHhcccccC-CcHHHHHHHHHHHHccCHHHHHHHHHhcCHhhcc--------CHhhHHH
Confidence 344444444444324556666655443321 2233333344555788887766666653222211 5677888
Q ss_pred HHHHHHHCCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHCC-CHHHH-HHHHHHHHHhCCCCHHHHHHHHHHHHhCCC
Q 006120 207 LGIALEGEGMVLSACEYYRESAILCPTHFRALKLLGSALFGVG-EYRAA-VKALEEAIFIKPDYADAHCDLASALHAMGE 284 (660)
Q Consensus 207 la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g-~~~~A-~~~~~~al~~~p~~~~~~~~la~~~~~~g~ 284 (660)
+|..+...|+.++|..+|+++.. +.+ .|-.|+.-..... .+... ...-...+. . ..-...+..+...|+
T Consensus 352 ~aRa~~~~g~~~~A~~~~~~~a~--~~~--fYG~LAa~~Lg~~~~~~~~~~~~~~~~~~---~--~~~~~ra~~L~~~g~ 422 (644)
T PRK11619 352 QADLLLEQGRKAEAEEILRQLMQ--QRG--FYPMVAAQRLGEEYPLKIDKAPKPDSALT---Q--GPEMARVRELMYWNM 422 (644)
T ss_pred HHHHHHHcCCHHHHHHHHHHHhc--CCC--cHHHHHHHHcCCCCCCCCCCCCchhhhhc---c--ChHHHHHHHHHHCCC
Confidence 89998889999999999999743 222 3333333222111 00000 000011111 1 123556778889999
Q ss_pred hHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHc
Q 006120 285 DERAIEVFQKAIDLKPGHVDALYNLGGLYMDLGAGETEEAKKALKEALK 333 (660)
Q Consensus 285 ~~~A~~~~~~al~~~p~~~~a~~~La~~~~~~~~g~~~eA~~~~~~al~ 333 (660)
...|...+..++.. .+......++.+.... |.++.|+....++..
T Consensus 423 ~~~a~~ew~~~~~~--~~~~~~~~la~~A~~~--g~~~~ai~~~~~~~~ 467 (644)
T PRK11619 423 DNTARSEWANLVAS--RSKTEQAQLARYAFNQ--QWWDLSVQATIAGKL 467 (644)
T ss_pred HHHHHHHHHHHHhc--CCHHHHHHHHHHHHHC--CCHHHHHHHHhhchh
Confidence 99999999888875 3456677777777777 899999887776543
No 433
>KOG0687 consensus 26S proteasome regulatory complex, subunit RPN7/PSMD6 [Posttranslational modification, protein turnover, chaperones]
Probab=63.36 E-value=1.3e+02 Score=30.95 Aligned_cols=103 Identities=14% Similarity=0.113 Sum_probs=43.0
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHhccCCCchhchHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCc---HH
Q 006120 160 RPHFRAGNCLYVLGRYREAKEEYLLALEAAETGGNQWAYLLPQIYVNLGIALEGEGMVLSACEYYRESAILCPTH---FR 236 (660)
Q Consensus 160 ~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~---~~ 236 (660)
+++.+.|..|.+.|+-+.|.+.+.+..+..-..+.... .......+|..|....-..+-++-.+..++..-+. -.
T Consensus 105 ea~~~kaeYycqigDkena~~~~~~t~~ktvs~g~kiD--Vvf~~iRlglfy~D~~lV~~~iekak~liE~GgDWeRrNR 182 (393)
T KOG0687|consen 105 EAMLRKAEYYCQIGDKENALEALRKTYEKTVSLGHKID--VVFYKIRLGLFYLDHDLVTESIEKAKSLIEEGGDWERRNR 182 (393)
T ss_pred HHHHHHHHHHHHhccHHHHHHHHHHHHHHHhhcccchh--hHHHHHHHHHhhccHHHHHHHHHHHHHHHHhCCChhhhhh
Confidence 44555555555555555555555555444332222111 22333444444443332333333322222222111 01
Q ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHh
Q 006120 237 ALKLLGSALFGVGEYRAAVKALEEAIFI 264 (660)
Q Consensus 237 ~~~~lg~~~~~~g~~~~A~~~~~~al~~ 264 (660)
.....|.......++.+|...|-.++.-
T Consensus 183 lKvY~Gly~msvR~Fk~Aa~Lfld~vsT 210 (393)
T KOG0687|consen 183 LKVYQGLYCMSVRNFKEAADLFLDSVST 210 (393)
T ss_pred HHHHHHHHHHHHHhHHHHHHHHHHHccc
Confidence 1122344444455666666666555543
No 434
>KOG1493 consensus Anaphase-promoting complex (APC), subunit 11 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=62.85 E-value=4.1 Score=31.46 Aligned_cols=21 Identities=38% Similarity=1.097 Sum_probs=18.4
Q ss_pred cccccccccccccccccccccccccccccCCC
Q 006120 592 VCSVCRYPIIGSRFKEMKSHFSLCSQCYSEGK 623 (660)
Q Consensus 592 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 623 (660)
||+.||.|..|+ |+.|-..|.
T Consensus 22 ~CGiCRm~Fdg~-----------Cp~Ck~PgD 42 (84)
T KOG1493|consen 22 TCGICRMPFDGC-----------CPDCKLPGD 42 (84)
T ss_pred ccceEecccCCc-----------CCCCcCCCC
Confidence 999999999885 999987774
No 435
>KOG0687 consensus 26S proteasome regulatory complex, subunit RPN7/PSMD6 [Posttranslational modification, protein turnover, chaperones]
Probab=62.74 E-value=1.9e+02 Score=29.72 Aligned_cols=105 Identities=14% Similarity=0.079 Sum_probs=66.8
Q ss_pred HHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC---CHH---HHHHHHHHHHHcCCHHHHHHHHHHHHHHhccCCCc
Q 006120 122 EEAFDGHMAIGRVLYEHQLFKEALVSFKRACELQPT---DVR---PHFRAGNCLYVLGRYREAKEEYLLALEAAETGGNQ 195 (660)
Q Consensus 122 ~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~---~~~---~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~ 195 (660)
.+..+++.++|..|.+.|+-+.|.+.+.+..+..-. ..+ ....+|..|....-. .+..+++-.+....++.
T Consensus 101 ~ev~ea~~~kaeYycqigDkena~~~~~~t~~ktvs~g~kiDVvf~~iRlglfy~D~~lV---~~~iekak~liE~GgDW 177 (393)
T KOG0687|consen 101 SEVREAMLRKAEYYCQIGDKENALEALRKTYEKTVSLGHKIDVVFYKIRLGLFYLDHDLV---TESIEKAKSLIEEGGDW 177 (393)
T ss_pred HHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHhhcccchhhHHHHHHHHHhhccHHHH---HHHHHHHHHHHHhCCCh
Confidence 445689999999999999999999999888775421 223 344555555444333 33444444444443333
Q ss_pred hhchHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC
Q 006120 196 WAYLLPQIYVNLGIALEGEGMVLSACEYYRESAILC 231 (660)
Q Consensus 196 ~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~ 231 (660)
.. .-..-...|.......++.+|-..|-.++...
T Consensus 178 eR--rNRlKvY~Gly~msvR~Fk~Aa~Lfld~vsTF 211 (393)
T KOG0687|consen 178 ER--RNRLKVYQGLYCMSVRNFKEAADLFLDSVSTF 211 (393)
T ss_pred hh--hhhHHHHHHHHHHHHHhHHHHHHHHHHHcccc
Confidence 22 22333445666677788999999888876543
No 436
>PF13041 PPR_2: PPR repeat family
Probab=62.14 E-value=37 Score=23.76 Aligned_cols=27 Identities=22% Similarity=0.285 Sum_probs=13.1
Q ss_pred HHHHHHHHHHhCCChHHHHHHHHHHHH
Q 006120 271 AHCDLASALHAMGEDERAIEVFQKAID 297 (660)
Q Consensus 271 ~~~~la~~~~~~g~~~~A~~~~~~al~ 297 (660)
.|..+-..+.+.|++++|.+.|++..+
T Consensus 5 ~yn~li~~~~~~~~~~~a~~l~~~M~~ 31 (50)
T PF13041_consen 5 TYNTLISGYCKAGKFEEALKLFKEMKK 31 (50)
T ss_pred HHHHHHHHHHHCcCHHHHHHHHHHHHH
Confidence 344444444455555555555554444
No 437
>KOG0276 consensus Vesicle coat complex COPI, beta' subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=61.82 E-value=40 Score=37.18 Aligned_cols=50 Identities=20% Similarity=0.102 Sum_probs=35.6
Q ss_pred HHHHCCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh
Q 006120 210 ALEGEGMVLSACEYYRESAILCPTHFRALKLLGSALFGVGEYRAAVKALEEAIFI 264 (660)
Q Consensus 210 ~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~ 264 (660)
+..+.|+++.|.....++ ++..-|..||.+....+++..|.+++.++-.+
T Consensus 646 lal~lgrl~iA~~la~e~-----~s~~Kw~~Lg~~al~~~~l~lA~EC~~~a~d~ 695 (794)
T KOG0276|consen 646 LALKLGRLDIAFDLAVEA-----NSEVKWRQLGDAALSAGELPLASECFLRARDL 695 (794)
T ss_pred hhhhcCcHHHHHHHHHhh-----cchHHHHHHHHHHhhcccchhHHHHHHhhcch
Confidence 345677777777665543 55667788888888888888888888776543
No 438
>KOG1920 consensus IkappaB kinase complex, IKAP component [Transcription]
Probab=61.02 E-value=1.4e+02 Score=36.04 Aligned_cols=25 Identities=28% Similarity=0.085 Sum_probs=14.6
Q ss_pred HHHHHHHHHCCCHHHHHHHHHHHHH
Q 006120 239 KLLGSALFGVGEYRAAVKALEEAIF 263 (660)
Q Consensus 239 ~~lg~~~~~~g~~~~A~~~~~~al~ 263 (660)
..|+..+..++++-+|-+...+.+.
T Consensus 1003 ~~L~s~L~e~~kh~eAa~il~e~~s 1027 (1265)
T KOG1920|consen 1003 EELVSRLVEQRKHYEAAKILLEYLS 1027 (1265)
T ss_pred HHHHHHHHHcccchhHHHHHHHHhc
Confidence 4455556666666666666555443
No 439
>KOG2063 consensus Vacuolar assembly/sorting proteins VPS39/VAM6/VPS3 [Intracellular trafficking, secretion, and vesicular transport]
Probab=60.80 E-value=1.8e+02 Score=34.27 Aligned_cols=169 Identities=12% Similarity=0.005 Sum_probs=89.4
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHh----CCCCHHHHHHHHHHHHHcCCH--HHHHHHHHHHHHHhccCCCchhch--
Q 006120 128 HMAIGRVLYEHQLFKEALVSFKRACEL----QPTDVRPHFRAGNCLYVLGRY--REAKEEYLLALEAAETGGNQWAYL-- 199 (660)
Q Consensus 128 ~~~lg~~~~~~g~~~~A~~~~~~al~~----~p~~~~~~~~la~~~~~~g~~--~~A~~~~~~al~~~p~~~~~~~~~-- 199 (660)
+..++..|...|+.++|++.+.+...- ++.....+-.+-..+...+.. +-..++-.-.++.+|..+......
T Consensus 507 y~~Li~LY~~kg~h~~AL~ll~~l~d~~~~~d~~~~~~~e~ii~YL~~l~~~~~~Li~~y~~wvl~~~p~~gi~Ift~~~ 586 (877)
T KOG2063|consen 507 YRELIELYATKGMHEKALQLLRDLVDEDSDTDSFQLDGLEKIIEYLKKLGAENLDLILEYADWVLNKNPEAGIQIFTSED 586 (877)
T ss_pred HHHHHHHHHhccchHHHHHHHHHHhccccccccchhhhHHHHHHHHHHhcccchhHHHHHhhhhhccCchhheeeeeccC
Confidence 567888888899999999988888773 333344444455555555554 556666666666666543221100
Q ss_pred H-HHHHH--HHHHHHHHCCCHHHHHHHHHHHHHhCCCc-HHHHHHHHHHHHHC--------CCHHHHHHH--HHHHHHh-
Q 006120 200 L-PQIYV--NLGIALEGEGMVLSACEYYRESAILCPTH-FRALKLLGSALFGV--------GEYRAAVKA--LEEAIFI- 264 (660)
Q Consensus 200 ~-~~~~~--~la~~~~~~g~~~~A~~~~~~al~~~p~~-~~~~~~lg~~~~~~--------g~~~~A~~~--~~~al~~- 264 (660)
. ...-. ..-.-+.......-++.|++.++...... ...+..+...|.+. ++-+++.+. .++....
T Consensus 587 ~~~~~sis~~~Vl~~l~~~~~~l~I~YLE~li~~~~~~~~~lht~ll~ly~e~v~~~~~~~~kg~e~~E~~~rekl~~~l 666 (877)
T KOG2063|consen 587 KQEAESISRDDVLNYLKSKEPKLLIPYLEHLISDNRLTSTLLHTVLLKLYLEKVLEQASTDGKGEEAPETTVREKLLDFL 666 (877)
T ss_pred hhhhccCCHHHHHHHhhhhCcchhHHHHHHHhHhccccchHHHHHHHHHHHHHHhhccCchhccccchhhhHHHHHHHHh
Confidence 0 00111 11122455667777888888888766553 33333333333221 122233333 2222111
Q ss_pred ------CCC-------CHHHHHHHHHHHHhCCChHHHHHHHHHHH
Q 006120 265 ------KPD-------YADAHCDLASALHAMGEDERAIEVFQKAI 296 (660)
Q Consensus 265 ------~p~-------~~~~~~~la~~~~~~g~~~~A~~~~~~al 296 (660)
+|+ ....|...+.++.++|+.++|+..+-..+
T Consensus 667 ~~s~~Y~p~~~L~~~~~~~l~ee~aill~rl~khe~aL~Iyv~~L 711 (877)
T KOG2063|consen 667 ESSDLYDPQLLLERLNGDELYEERAILLGRLGKHEEALHIYVHEL 711 (877)
T ss_pred hhhcccCcchhhhhccchhHHHHHHHHHhhhhhHHHHHHHHHHHh
Confidence 111 13455566667777777777776665543
No 440
>PRK00807 50S ribosomal protein L24e; Validated
Probab=60.22 E-value=4.4 Score=29.26 Aligned_cols=38 Identities=29% Similarity=0.643 Sum_probs=25.7
Q ss_pred ccccccccccc---ccccc-cccccccccc-cccc---CCCCCCCC
Q 006120 591 HVCSVCRYPII---GSRFK-EMKSHFSLCS-QCYS---EGKVPPTF 628 (660)
Q Consensus 591 ~~~~~~~~~~~---~~~~~-~~~~~~~~~~-~~~~---~~~~~~~~ 628 (660)
..|++|+++|- |.+|- --...|-.|| .|.+ -++.|-..
T Consensus 2 ~~C~fcG~~I~pg~G~~~vr~Dgkv~~Fcs~KC~~~f~~~~nprk~ 47 (52)
T PRK00807 2 RTCSFCGKEIEPGTGKMYVKKDGTILYFCSSKCEKNYKLGRVPRKL 47 (52)
T ss_pred cccCCCCCeEcCCCCeEEEEeCCcEEEEeCHHHHHHHHccCCCCcc
Confidence 47999999887 55643 3345566666 8977 66777544
No 441
>PF12854 PPR_1: PPR repeat
Probab=59.61 E-value=22 Score=22.84 Aligned_cols=25 Identities=20% Similarity=0.262 Sum_probs=12.6
Q ss_pred HHHHHHHHHHHHhCCChHHHHHHHH
Q 006120 269 ADAHCDLASALHAMGEDERAIEVFQ 293 (660)
Q Consensus 269 ~~~~~~la~~~~~~g~~~~A~~~~~ 293 (660)
...|..+-..|.+.|+.++|.+.++
T Consensus 7 ~~ty~~lI~~~Ck~G~~~~A~~l~~ 31 (34)
T PF12854_consen 7 VVTYNTLIDGYCKAGRVDEAFELFD 31 (34)
T ss_pred HhHHHHHHHHHHHCCCHHHHHHHHH
Confidence 3444445555555555555555544
No 442
>PF13041 PPR_2: PPR repeat family
Probab=59.35 E-value=49 Score=23.12 Aligned_cols=28 Identities=21% Similarity=0.220 Sum_probs=14.5
Q ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHh
Q 006120 237 ALKLLGSALFGVGEYRAAVKALEEAIFI 264 (660)
Q Consensus 237 ~~~~lg~~~~~~g~~~~A~~~~~~al~~ 264 (660)
.|..+-..+.+.|++++|.+.|++..+.
T Consensus 5 ~yn~li~~~~~~~~~~~a~~l~~~M~~~ 32 (50)
T PF13041_consen 5 TYNTLISGYCKAGKFEEALKLFKEMKKR 32 (50)
T ss_pred HHHHHHHHHHHCcCHHHHHHHHHHHHHc
Confidence 3444455555555555555555555443
No 443
>PHA02537 M terminase endonuclease subunit; Provisional
Probab=59.03 E-value=95 Score=30.31 Aligned_cols=25 Identities=20% Similarity=0.022 Sum_probs=19.2
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHHhC
Q 006120 131 IGRVLYEHQLFKEALVSFKRACELQ 155 (660)
Q Consensus 131 lg~~~~~~g~~~~A~~~~~~al~~~ 155 (660)
.-.-.+..|+++.|+.+..-+++.+
T Consensus 89 ~mvW~~D~Gd~~~AL~ia~yAI~~~ 113 (230)
T PHA02537 89 VMVWRFDIGDFDGALEIAEYALEHG 113 (230)
T ss_pred eeeeeeeccCHHHHHHHHHHHHHcC
Confidence 3344567889999999999998875
No 444
>PF09797 NatB_MDM20: N-acetyltransferase B complex (NatB) non catalytic subunit; InterPro: IPR019183 This is the non-catalytic subunit of the N-terminal acetyltransferase B complex (NatB). The NatB complex catalyses the acetylation of the amino-terminal methionine residue of all proteins beginning with Met-Asp or Met-Glu and of some proteins beginning with Met-Asn or Met-Met. In Saccharomyces cerevisiae (Baker's yeast) this subunit is called MDM20 and in Schizosaccharomyces pombe (Fission yeast) it is called Arm1. NatB acetylates the Tpm1 protein and regulates and tropomyocin-actin interactions. This subunit is required by the NatB complex for the N-terminal acetylation of Tpm1 [].
Probab=58.48 E-value=1.9e+02 Score=30.52 Aligned_cols=42 Identities=21% Similarity=-0.038 Sum_probs=21.4
Q ss_pred HHHHHHHHHHHHHhccCCCchhchHHHHHHHHHHHHHHCCCHHHHHHHHH
Q 006120 176 REAKEEYLLALEAAETGGNQWAYLLPQIYVNLGIALEGEGMVLSACEYYR 225 (660)
Q Consensus 176 ~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~ 225 (660)
-+|+..++.++...|. +......+..+|..+|-.+.|...|.
T Consensus 200 ~~Ai~lLE~~l~~s~~--------n~~~~LlLvrlY~~LG~~~~A~~~~~ 241 (365)
T PF09797_consen 200 LQAIALLEHALKKSPH--------NYQLKLLLVRLYSLLGAGSLALEHYE 241 (365)
T ss_pred HHHHHHHHHHHHcCCC--------cHHHHHHHHHHHHHcCCHHHHHHHHH
Confidence 3445555555555554 44444555555555555555555554
No 445
>cd00730 rubredoxin Rubredoxin; nonheme iron binding domains containing a [Fe(SCys)4] center. Rubredoxins are small nonheme iron proteins. The iron atom is coordinated by four cysteine residues (Fe(S-Cys)4), but iron can also be replaced by cobalt, nickel or zinc. They are believed to be involved in electron transfer.
Probab=58.26 E-value=5.2 Score=28.63 Aligned_cols=28 Identities=25% Similarity=0.785 Sum_probs=21.6
Q ss_pred ccccccccccc------------cccccccccccccccccc
Q 006120 591 HVCSVCRYPII------------GSRFKEMKSHFSLCSQCY 619 (660)
Q Consensus 591 ~~~~~~~~~~~------------~~~~~~~~~~~~~~~~~~ 619 (660)
..|.+|+|... |-.|.++-..| .|.+|-
T Consensus 2 y~C~~CgyiYd~~~Gd~~~~i~pGt~f~~Lp~~w-~CP~C~ 41 (50)
T cd00730 2 YECRICGYIYDPAEGDPDEGIPPGTPFEDLPDDW-VCPVCG 41 (50)
T ss_pred cCCCCCCeEECCCCCCcccCcCCCCCHhHCCCCC-CCCCCC
Confidence 57999999887 45688877765 588884
No 446
>PF12854 PPR_1: PPR repeat
Probab=57.19 E-value=28 Score=22.39 Aligned_cols=26 Identities=15% Similarity=0.172 Sum_probs=15.0
Q ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHH
Q 006120 235 FRALKLLGSALFGVGEYRAAVKALEE 260 (660)
Q Consensus 235 ~~~~~~lg~~~~~~g~~~~A~~~~~~ 260 (660)
...|..+...+.+.|+.++|.+.+++
T Consensus 7 ~~ty~~lI~~~Ck~G~~~~A~~l~~~ 32 (34)
T PF12854_consen 7 VVTYNTLIDGYCKAGRVDEAFELFDE 32 (34)
T ss_pred HhHHHHHHHHHHHCCCHHHHHHHHHh
Confidence 44555555666666666666665543
No 447
>PF14206 Cys_rich_CPCC: Cysteine-rich CPCC
Probab=57.05 E-value=5.2 Score=31.56 Aligned_cols=55 Identities=24% Similarity=0.570 Sum_probs=39.4
Q ss_pred ccccccccccccccccccccccccccccccCCCC-----CC------CCccccc--hhhccCChhHhhhhh
Q 006120 591 HVCSVCRYPIIGSRFKEMKSHFSLCSQCYSEGKV-----PP------TFKQDEY--KFKEYGSESEAMKDK 648 (660)
Q Consensus 591 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~------~~~~~~~--~~~~~~~~~~~~~~~ 648 (660)
+.|..|+|.-+..|-..+ |-.|..|+=|--- |. ++.+.|. -|++||-=.+.|+..
T Consensus 2 ~~CPCCg~~Tl~~~~~~~---ydIC~VC~WEdD~~q~~~pd~~~G~N~~SL~eAr~ny~~~GA~e~~~~~~ 69 (78)
T PF14206_consen 2 YPCPCCGYYTLEERGEGT---YDICPVCFWEDDGVQLRDPDYYGGANHMSLNEARENYKKFGACEERMLKH 69 (78)
T ss_pred ccCCCCCcEEeccCCCcC---ceECCCCCcccCCccccCCcccCCCCHHHHHHHHHHHHHHCcccHHHHhh
Confidence 579999999887775433 8999999876532 32 5667777 699998665555543
No 448
>KOG2114 consensus Vacuolar assembly/sorting protein PEP5/VPS11 [Intracellular trafficking, secretion, and vesicular transport]
Probab=56.52 E-value=3e+02 Score=32.07 Aligned_cols=221 Identities=10% Similarity=0.037 Sum_probs=111.7
Q ss_pred HHHHhHHHHHHHHHHHHHHHHHHHHHHHHHhhccCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHH
Q 006120 86 EISEKRVFWEESTHDYAVFVKELGVLRNRADGARSREEAFDGHMAIGRVLYEHQLFKEALVSFKRACELQPTDVRPHFRA 165 (660)
Q Consensus 86 ~~~~~~~~l~~~~~~~g~~~~Al~~l~~a~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l 165 (660)
.........|.-+...|++++|...|-+.+....... . -.-+.......+-..+++...+..-.+.+--..|
T Consensus 366 ~~~~i~~kYgd~Ly~Kgdf~~A~~qYI~tI~~le~s~-V-------i~kfLdaq~IknLt~YLe~L~~~gla~~dhttlL 437 (933)
T KOG2114|consen 366 TLAEIHRKYGDYLYGKGDFDEATDQYIETIGFLEPSE-V-------IKKFLDAQRIKNLTSYLEALHKKGLANSDHTTLL 437 (933)
T ss_pred HHHHHHHHHHHHHHhcCCHHHHHHHHHHHcccCChHH-H-------HHHhcCHHHHHHHHHHHHHHHHcccccchhHHHH
Confidence 3345566667777888888888888888876554321 1 1222344445555556666655544444555566
Q ss_pred HHHHHHcCCHHHHHHHHHHHHHHhccCCCchhchHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHH
Q 006120 166 GNCLYVLGRYREAKEEYLLALEAAETGGNQWAYLLPQIYVNLGIALEGEGMVLSACEYYRESAILCPTHFRALKLLGSAL 245 (660)
Q Consensus 166 a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~ 245 (660)
-.+|.++++.++-.+. +...+. ..|. ..+ -..-.++.+.+-+++|.-...+.- .+ -..+-.++
T Consensus 438 LncYiKlkd~~kL~ef----I~~~~~--g~~~---fd~-e~al~Ilr~snyl~~a~~LA~k~~----~h---e~vl~ill 500 (933)
T KOG2114|consen 438 LNCYIKLKDVEKLTEF----ISKCDK--GEWF---FDV-ETALEILRKSNYLDEAELLATKFK----KH---EWVLDILL 500 (933)
T ss_pred HHHHHHhcchHHHHHH----HhcCCC--ccee---eeH-HHHHHHHHHhChHHHHHHHHHHhc----cC---HHHHHHHH
Confidence 7788888887664443 333331 1110 000 011123344444445444333321 11 12334556
Q ss_pred HHCCCHHHHHHHHHHHHHhCCCC-HHHHHHHHHHHHhCCChHHHHHHHHHHHHh-C-CCCHHHH----HHHHHHHHHhcC
Q 006120 246 FGVGEYRAAVKALEEAIFIKPDY-ADAHCDLASALHAMGEDERAIEVFQKAIDL-K-PGHVDAL----YNLGGLYMDLGA 318 (660)
Q Consensus 246 ~~~g~~~~A~~~~~~al~~~p~~-~~~~~~la~~~~~~g~~~~A~~~~~~al~~-~-p~~~~a~----~~La~~~~~~~~ 318 (660)
...++|++|+.++... .|.. .......|..++.. .+++-...+-+.+.. . +...... ..+-.+....
T Consensus 501 e~~~ny~eAl~yi~sl---p~~e~l~~l~kyGk~Ll~h-~P~~t~~ili~~~t~~~~~~~~~~~s~~~~~~~~i~if~-- 574 (933)
T KOG2114|consen 501 EDLHNYEEALRYISSL---PISELLRTLNKYGKILLEH-DPEETMKILIELITELNSQGKGKSLSNIPDSIEFIGIFS-- 574 (933)
T ss_pred HHhcCHHHHHHHHhcC---CHHHHHHHHHHHHHHHHhh-ChHHHHHHHHHHHhhcCCCCCCchhhcCccchhheeeec--
Confidence 6778888888887642 2222 34455667666543 444444444444432 2 1111111 1112222333
Q ss_pred CCHHHHHHHHHHHHcccCC
Q 006120 319 GETEEAKKALKEALKMTNR 337 (660)
Q Consensus 319 g~~~eA~~~~~~al~l~p~ 337 (660)
+++..-..+++...+..|+
T Consensus 575 ~~~~~~~~Fl~~~~E~s~~ 593 (933)
T KOG2114|consen 575 QNYQILLNFLESMSEISPD 593 (933)
T ss_pred cCHHHHHHHHHHHHhcCCC
Confidence 5666666666666666554
No 449
>PF08626 TRAPPC9-Trs120: Transport protein Trs120 or TRAPPC9, TRAPP II complex subunit; InterPro: IPR013935 The trafficking protein particle complex TRAPP is a multi-protein complex needed in the early stages of the secretory pathway. To date, two kinds of TRAPP complexes have been studied, TRAPPI and TRAPP II. These complexes differ in subunit composition []. TRAPP I binds vesicles derived from the endoplasmic reticulum bringing them closer to the acceptor membrane. Trs120 is a subunit specific to the TRAPP II complex [] along with Trs65p and Trs130p(TRAPPC10). It is suggested that Trs120p is required for the stability of the Trs130p subunit, suggesting that these two proteins might interact in some way []. It is likely that there is a complex function for TRAPP II in multiple pathways [].
Probab=55.48 E-value=2.1e+02 Score=35.60 Aligned_cols=172 Identities=17% Similarity=0.125 Sum_probs=92.8
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhccCCCchhchHHHHHHHHHHHHHHCCCHHHHH---HHHHHHH-------
Q 006120 159 VRPHFRAGNCLYVLGRYREAKEEYLLALEAAETGGNQWAYLLPQIYVNLGIALEGEGMVLSAC---EYYRESA------- 228 (660)
Q Consensus 159 ~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~---~~~~~al------- 228 (660)
.+..-.+|..++..|.+.+|++.|..|+......++..- .+.++-.++.+..-.+....-. .......
T Consensus 242 gR~~k~~gd~~LlaG~~~dAl~~y~~a~~~~k~~~D~lW--~a~alEg~~~~~~l~~~~~~~~qip~i~~~~~~~~~~~~ 319 (1185)
T PF08626_consen 242 GRLQKVLGDLYLLAGRWPDALKEYTEAIEILKSSNDYLW--LASALEGIAVCLLLLSWLGMDFQIPQICSPLCPISSSTS 319 (1185)
T ss_pred hhhhhhhhhHHHHcCCHHHHHHHHHHHHHHHhhcCcHhh--hHHHHHHHHHHHHHHhccCCCccccchhcccCCCCCccC
Confidence 455667788888888888888888888877766555432 5555555554443322111000 0000000
Q ss_pred -----------HhCCCcH-------HHHHHHHHHHH-HCCCHHHHHHHHHHHHHhC----CCC--HHHHHHHHHHHHhCC
Q 006120 229 -----------ILCPTHF-------RALKLLGSALF-GVGEYRAAVKALEEAIFIK----PDY--ADAHCDLASALHAMG 283 (660)
Q Consensus 229 -----------~~~p~~~-------~~~~~lg~~~~-~~g~~~~A~~~~~~al~~~----p~~--~~~~~~la~~~~~~g 283 (660)
...|.+. ..-..+..+.. -...+++|+.+|.++.... |.. .++...++.++....
T Consensus 320 ~~s~~~~~~~~~~sP~~s~~~~~~~~~~~~~~~l~~~i~~~~~~~l~~Y~~~~~~~~~~~p~lv~~E~~lr~~~~l~~~~ 399 (1185)
T PF08626_consen 320 SSSPRNSSSSSTQSPRNSVSSSSSSNIDVNLVNLPNLIPDLYEKALSLYSRSTNDTSEYVPQLVYSEACLRFARFLVAQH 399 (1185)
T ss_pred ccCcccCCccCCCCCCccccCCCccccchhhccCHhhhhHHHHHHHHHHHHhhccccccCcchHHHHHHHHHHHHHHHhh
Confidence 0001110 00000001111 1123577888888876332 222 345556666666666
Q ss_pred --------------------ChHHHHHHHHHHHHhCCC------CHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHcc
Q 006120 284 --------------------EDERAIEVFQKAIDLKPG------HVDALYNLGGLYMDLGAGETEEAKKALKEALKM 334 (660)
Q Consensus 284 --------------------~~~~A~~~~~~al~~~p~------~~~a~~~La~~~~~~~~g~~~eA~~~~~~al~l 334 (660)
.-.++...+.+++..... ....+..++.+|..+ |-..++.-+++.++..
T Consensus 400 ~~~~l~~iV~~~~~~~~~~~~~~eI~~~l~~~~~~~l~~l~~~dqi~i~~~lA~vy~~l--G~~RK~AFvlR~l~~~ 474 (1185)
T PF08626_consen 400 LSDNLDHIVKRPLTPTPNISSRSEIAEFLFKAFPLQLKDLSVEDQIRIYSGLASVYGSL--GFHRKKAFVLRELAVQ 474 (1185)
T ss_pred cccchhhhhccccccccCCCCHHHHHHHHHHhhhhhhhhCCHHHHHHHHHHHHHHHHhc--chhHHHHHHHHHHHHH
Confidence 667777777777765432 245777888888888 7777777666666544
No 450
>COG4941 Predicted RNA polymerase sigma factor containing a TPR repeat domain [Transcription]
Probab=55.37 E-value=2.6e+02 Score=28.94 Aligned_cols=131 Identities=15% Similarity=0.066 Sum_probs=72.4
Q ss_pred HHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHH-----cCCHHHHHHHHHHHHHHhccCCCchhchHHHHHHHHHH
Q 006120 136 YEHQLFKEALVSFKRACELQ-PTDVRPHFRAGNCLYV-----LGRYREAKEEYLLALEAAETGGNQWAYLLPQIYVNLGI 209 (660)
Q Consensus 136 ~~~g~~~~A~~~~~~al~~~-p~~~~~~~~la~~~~~-----~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~la~ 209 (660)
+..+-++++...+.+++... |.-....-.++.++.. .-+|..-..+|.-...+.|+ +.+-.|.+.
T Consensus 267 W~r~lI~eg~all~rA~~~~~pGPYqlqAAIaa~HA~a~~aedtDW~~I~aLYdaL~~~apS---------PvV~LNRAV 337 (415)
T COG4941 267 WDRALIDEGLALLDRALASRRPGPYQLQAAIAALHARARRAEDTDWPAIDALYDALEQAAPS---------PVVTLNRAV 337 (415)
T ss_pred hhHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHHHHhhcccCCCChHHHHHHHHHHHHhCCC---------CeEeehHHH
Confidence 33444566666666666553 2222222233333322 33566666666666666664 333445555
Q ss_pred HHHHCCCHHHHHHHHHHHHHh--CCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHH
Q 006120 210 ALEGEGMVLSACEYYRESAIL--CPTHFRALKLLGSALFGVGEYRAAVKALEEAIFIKPDYADAHCDL 275 (660)
Q Consensus 210 ~~~~~g~~~~A~~~~~~al~~--~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l 275 (660)
......-.+.++...+....- -......+...|.++.+.|+.++|...|++++.+.++..+..+..
T Consensus 338 Ala~~~Gp~agLa~ve~L~~~~~L~gy~~~h~~RadlL~rLgr~~eAr~aydrAi~La~~~aer~~l~ 405 (415)
T COG4941 338 ALAMREGPAAGLAMVEALLARPRLDGYHLYHAARADLLARLGRVEEARAAYDRAIALARNAAERAFLR 405 (415)
T ss_pred HHHHhhhHHhHHHHHHHhhcccccccccccHHHHHHHHHHhCChHHHHHHHHHHHHhcCChHHHHHHH
Confidence 555555555666655554443 223344556667777777777777777777777777665544433
No 451
>PF00412 LIM: LIM domain; InterPro: IPR001781 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. This entry represents LIM-type zinc finger (Znf) domains. LIM domains coordinate one or more zinc atoms, and are named after the three proteins (LIN-11, Isl1 and MEC-3) in which they were first found. They consist of two zinc-binding motifs that resemble GATA-like Znf's, however the residues holding the zinc atom(s) are variable, involving Cys, His, Asp or Glu residues. LIM domains are involved in proteins with differing functions, including gene expression, and cytoskeleton organisation and development [, ]. Protein containing LIM Znf domains include: Caenorhabditis elegans mec-3; a protein required for the differentiation of the set of six touch receptor neurons in this nematode. C. elegans. lin-11; a protein required for the asymmetric division of vulval blast cells. Vertebrate insulin gene enhancer binding protein isl-1. Isl-1 binds to one of the two cis-acting protein-binding domains of the insulin gene. Vertebrate homeobox proteins lim-1, lim-2 (lim-5) and lim3. Vertebrate lmx-1, which acts as a transcriptional activator by binding to the FLAT element; a beta-cell-specific transcriptional enhancer found in the insulin gene. Mammalian LH-2, a transcriptional regulatory protein involved in the control of cell differentiation in developing lymphoid and neural cell types. Drosophila melanogaster (Fruit fly) protein apterous, required for the normal development of the wing and halter imaginal discs. Vertebrate protein kinases LIMK-1 and LIMK-2. Mammalian rhombotins. Rhombotin 1 (RBTN1 or TTG-1) and rhombotin-2 (RBTN2 or TTG-2) are proteins of about 160 amino acids whose genes are disrupted by chromosomal translocations in T-cell leukemia. Mammalian and avian cysteine-rich protein (CRP), a 192 amino-acid protein of unknown function. Seems to interact with zyxin. Mammalian cysteine-rich intestinal protein (CRIP), a small protein which seems to have a role in zinc absorption and may function as an intracellular zinc transport protein. Vertebrate paxillin, a cytoskeletal focal adhesion protein. Mus musculus (Mouse) testin which should not be confused with rat testin which is a thiol protease homologue (see IPR000169 from INTERPRO). Helianthus annuus (Common sunflower) pollen specific protein SF3. Chicken zyxin. Zyxin is a low-abundance adhesion plaque protein which has been shown to interact with CRP. Yeast protein LRG1 which is involved in sporulation []. Saccharomyces cerevisiae (Baker's yeast) rho-type GTPase activating protein RGA1/DBM1. C. elegans homeobox protein ceh-14. C. elegans homeobox protein unc-97. S. cerevisiae hypothetical protein YKR090w. C. elegans hypothetical proteins C28H8.6. These proteins generally contain two tandem copies of the LIM domain in their N-terminal section. Zyxin and paxillin are exceptions in that they contain respectively three and four LIM domains at their C-terminal extremity. In apterous, isl-1, LH-2, lin-11, lim-1 to lim-3, lmx-1 and ceh-14 and mec-3 there is a homeobox domain some 50 to 95 amino acids after the LIM domains. LIM domains contain seven conserved cysteine residues and a histidine. The arrangement followed by these conserved residues is: C-x(2)-C-x(16,23)-H-x(2)-[CH]-x(2)-C-x(2)-C-x(16,21)-C-x(2,3)-[CHD] LIM domains bind two zinc ions []. LIM does not bind DNA, rather it seems to act as an interface for protein-protein interaction. More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; GO: 0008270 zinc ion binding; PDB: 2CO8_A 2EGQ_A 2CUR_A 3IXE_B 1CTL_A 1B8T_A 1X62_A 2DFY_C 1IML_A 2CUQ_A ....
Probab=54.99 E-value=3 Score=30.60 Aligned_cols=49 Identities=27% Similarity=0.484 Sum_probs=37.2
Q ss_pred hhhhhhhhcccCccccCC-CccccccccccccccccccccccccccccccC
Q 006120 572 GIMSTLMKLEAGDRNRHG-RHVCSVCRYPIIGSRFKEMKSHFSLCSQCYSE 621 (660)
Q Consensus 572 ~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 621 (660)
.|..+-+.++.+++.=|. =-+|+.|+-+|.++.|.+... --.|..||.+
T Consensus 7 ~I~~~~~~~~~~~~~~H~~Cf~C~~C~~~l~~~~~~~~~~-~~~C~~c~~~ 56 (58)
T PF00412_consen 7 PIYGTEIVIKAMGKFWHPECFKCSKCGKPLNDGDFYEKDG-KPYCKDCYQK 56 (58)
T ss_dssp BESSSSEEEEETTEEEETTTSBETTTTCBTTTSSEEEETT-EEEEHHHHHH
T ss_pred CccCcEEEEEeCCcEEEccccccCCCCCccCCCeeEeECC-EEECHHHHhh
Confidence 344444445677777787 568999999999999888766 6789999863
No 452
>KOG4322 consensus Anaphase-promoting complex (APC), subunit 5 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=54.56 E-value=3e+02 Score=29.45 Aligned_cols=248 Identities=13% Similarity=-0.017 Sum_probs=140.6
Q ss_pred CchHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHhhccCcHHHHHHHHH--HH---HHHHHcCCHHHHHHHHHHHHHhCCC
Q 006120 83 TSAEISEKRVFWEESTHDYAVFVKELGVLRNRADGARSREEAFDGHMA--IG---RVLYEHQLFKEALVSFKRACELQPT 157 (660)
Q Consensus 83 ~~~~~~~~~~~l~~~~~~~g~~~~Al~~l~~a~~~~~~~~~~~~~~~~--lg---~~~~~~g~~~~A~~~~~~al~~~p~ 157 (660)
......-+....+.....+|...-+...+.- .++.+-.+.....|.. .+ ..-...+.|..|.......--. +
T Consensus 195 ~~~llq~al~s~a~~~a~qg~~ql~~v~L~h-Kqrfp~~~~~a~~wml~d~~~v~~~~~~~~~~h~al~~~~g~d~~--~ 271 (482)
T KOG4322|consen 195 NKTLLQLALGSIAVSRSSQGIEQLTQVQLEH-KQRFPCALPLAMKWMLHDLLEVEENNLNTSYYHKALNSWFGGDYQ--Q 271 (482)
T ss_pred chhHHHHHHHHHHHHHHhcchHHHHHHHHHH-HHhcCCCcHHHHHHHHHHhHHHHHhhhhhhHHHHHHHHhhcchHH--h
Confidence 3333334444445555555544444444444 4445433322222211 11 1122234444444433332222 2
Q ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhccCCCchhchHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC----CC
Q 006120 158 DVRPHFRAGNCLYVLGRYREAKEEYLLALEAAETGGNQWAYLLPQIYVNLGIALEGEGMVLSACEYYRESAILC----PT 233 (660)
Q Consensus 158 ~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~----p~ 233 (660)
..+..+..+.++....++..|...+.++.-.......... ...+...++.++.+.+..-.+..+.-.++... -+
T Consensus 272 svE~l~R~A~il~A~~q~s~A~~ll~kL~vqc~k~~~~em--~~sVLL~~ae~~~~g~~a~l~lplaL~~~~~~sey~ld 349 (482)
T KOG4322|consen 272 SVENLCRFAHILHADEQVSYAYALLNKLMVQCDKGCNEEM--LHSVLLTIAEARESGDTACLNLPLALMFEFKRSEYSLD 349 (482)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccchhHHH--HHHHHHHHHHHHhcCCCchhhHHHHHHHHHHHHHhccc
Confidence 4677788999999999999999999998866544333322 56777778888877777666666655554432 12
Q ss_pred --cHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCC------HHHHHHHHHHH------HhCCChHHHHHHHHHHHHhC
Q 006120 234 --HFRALKLLGSALFGVGEYRAAVKALEEAIFIKPDY------ADAHCDLASAL------HAMGEDERAIEVFQKAIDLK 299 (660)
Q Consensus 234 --~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~------~~~~~~la~~~------~~~g~~~~A~~~~~~al~~~ 299 (660)
.+..-..++......|-.+.|+..+..++..--.+ +.++...++|+ ....+.+.+..++++|-...
T Consensus 350 yl~a~~~L~LAl~~L~LG~pk~Al~lLh~a~h~Il~~GgL~drara~fvfanC~lA~a~s~~~e~ld~~~~~L~~A~~~f 429 (482)
T KOG4322|consen 350 YLEANENLDLALEHLALGSPKAALPLLHTAVHLILVQGGLDDRARAIFVFANCTLAFALSCANESLDGFPRYLDLAQSIF 429 (482)
T ss_pred hhhhhchHHHHHHHHHcCChHHHHHHHHhhhhHHHhccchhhcceeEEEEEeeeecchhhhhhhhHHhhHHHHHHHHHHH
Confidence 24455677888888999999999999987652111 11111111111 14445566666666664432
Q ss_pred ------CCCHHHHHHHHHHHHHhcCCCH---HHHHHHHHHHHcccCC
Q 006120 300 ------PGHVDALYNLGGLYMDLGAGET---EEAKKALKEALKMTNR 337 (660)
Q Consensus 300 ------p~~~~a~~~La~~~~~~~~g~~---~eA~~~~~~al~l~p~ 337 (660)
..-.++.+-++..|-.. |+. +++...|+++..--|.
T Consensus 430 ~kL~~he~ildv~yf~A~~yn~l--Gd~~eRn~~AslFrk~~~~le~ 474 (482)
T KOG4322|consen 430 YKLGCHEKILDVTYFSAYQYNHL--GDSPERNLLASLFRKAWRYLEL 474 (482)
T ss_pred HHccchHHHHHHHHHHHHHHHhh--cCchHHHHHHHHHHHHHHhcCC
Confidence 11356778888888888 664 4566667777766554
No 453
>TIGR02710 CRISPR-associated protein, TIGR02710 family. Members of this family are found, exclusively in the vicinity of CRISPR repeats and other CRISPR-associated (cas) genes, in Methanothermobacter thermautotrophicus (Archaea), Thermus thermophilus (Deinococcus-Thermus), Chloroflexus aurantiacus (Chloroflexi), and Thermomicrobium roseum (Thermomicrobia).
Probab=54.04 E-value=2.9e+02 Score=29.22 Aligned_cols=55 Identities=7% Similarity=-0.179 Sum_probs=40.5
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHHhCCC-----CHHHHHHHH--HHHHHcCCHHHHHHHHHH
Q 006120 130 AIGRVLYEHQLFKEALVSFKRACELQPT-----DVRPHFRAG--NCLYVLGRYREAKEEYLL 184 (660)
Q Consensus 130 ~lg~~~~~~g~~~~A~~~~~~al~~~p~-----~~~~~~~la--~~~~~~g~~~~A~~~~~~ 184 (660)
..+..+++.++|..|...|.+++...+. ....+..+. ..++..-++++|.+.+++
T Consensus 135 ~~~r~l~n~~dy~aA~~~~~~L~~r~l~~~~~~~~~~~~~l~~~y~~WD~fd~~~A~~~L~~ 196 (380)
T TIGR02710 135 GYARRAINAFDYLFAHARLETLLRRLLSAVNHTFYEAMIKLTRAYLHWDRFEHEEALDYLND 196 (380)
T ss_pred HHHHHHHHhcChHHHHHHHHHHHhcccChhhhhHHHHHHHHHHHHHHHHccCHHHHHHHHhh
Confidence 3566889999999999999999987542 123344444 445667889999999985
No 454
>KOG2063 consensus Vacuolar assembly/sorting proteins VPS39/VAM6/VPS3 [Intracellular trafficking, secretion, and vesicular transport]
Probab=53.97 E-value=3.1e+02 Score=32.52 Aligned_cols=167 Identities=16% Similarity=-0.018 Sum_probs=104.1
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHhccCCCchhchHHHHHHHHHHHHHHCCCH--HHHHHHHHHHHHhCCCcHH--
Q 006120 161 PHFRAGNCLYVLGRYREAKEEYLLALEAAETGGNQWAYLLPQIYVNLGIALEGEGMV--LSACEYYRESAILCPTHFR-- 236 (660)
Q Consensus 161 ~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~la~~~~~~g~~--~~A~~~~~~al~~~p~~~~-- 236 (660)
-+..|+.+|...|+.++|++.+.+...-... .+.. ....+-.+-..+...+.- +-..++-.-.+..+|....
T Consensus 506 ~y~~Li~LY~~kg~h~~AL~ll~~l~d~~~~-~d~~---~~~~~e~ii~YL~~l~~~~~~Li~~y~~wvl~~~p~~gi~I 581 (877)
T KOG2063|consen 506 KYRELIELYATKGMHEKALQLLRDLVDEDSD-TDSF---QLDGLEKIIEYLKKLGAENLDLILEYADWVLNKNPEAGIQI 581 (877)
T ss_pred cHHHHHHHHHhccchHHHHHHHHHHhccccc-cccc---hhhhHHHHHHHHHHhcccchhHHHHHhhhhhccCchhheee
Confidence 3677899999999999999999998874421 1111 334444455555555555 6677777777766665421
Q ss_pred -----------HHHHHHHHHHHCCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHhC--------CChHHHHHH--HHH
Q 006120 237 -----------ALKLLGSALFGVGEYRAAVKALEEAIFIKPD-YADAHCDLASALHAM--------GEDERAIEV--FQK 294 (660)
Q Consensus 237 -----------~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~~la~~~~~~--------g~~~~A~~~--~~~ 294 (660)
.-.....-+.......-++.+++.++..... ....+..++..|.+. ++-+++.+. .++
T Consensus 582 ft~~~~~~~~sis~~~Vl~~l~~~~~~l~I~YLE~li~~~~~~~~~lht~ll~ly~e~v~~~~~~~~kg~e~~E~~~rek 661 (877)
T KOG2063|consen 582 FTSEDKQEAESISRDDVLNYLKSKEPKLLIPYLEHLISDNRLTSTLLHTVLLKLYLEKVLEQASTDGKGEEAPETTVREK 661 (877)
T ss_pred eeccChhhhccCCHHHHHHHhhhhCcchhHHHHHHHhHhccccchHHHHHHHHHHHHHHhhccCchhccccchhhhHHHH
Confidence 0111223345677888999999999988765 344555555555431 223344444 333
Q ss_pred HHHh-------CCCC-------HHHHHHHHHHHHHhcCCCHHHHHHHHHHHHc
Q 006120 295 AIDL-------KPGH-------VDALYNLGGLYMDLGAGETEEAKKALKEALK 333 (660)
Q Consensus 295 al~~-------~p~~-------~~a~~~La~~~~~~~~g~~~eA~~~~~~al~ 333 (660)
.... +|+. ...|...+.++.++ |+.++|+..|-.-+.
T Consensus 662 l~~~l~~s~~Y~p~~~L~~~~~~~l~ee~aill~rl--~khe~aL~Iyv~~L~ 712 (877)
T KOG2063|consen 662 LLDFLESSDLYDPQLLLERLNGDELYEERAILLGRL--GKHEEALHIYVHELD 712 (877)
T ss_pred HHHHhhhhcccCcchhhhhccchhHHHHHHHHHhhh--hhHHHHHHHHHHHhc
Confidence 3222 2221 34677788888888 899999988877765
No 455
>PF09205 DUF1955: Domain of unknown function (DUF1955); InterPro: IPR015288 Members of this family are found in hypothetical proteins synthesised by the Archaeal organism Sulfolobus. Their exact function has not, as yet, been determined. ; PDB: 1WY6_A.
Probab=53.51 E-value=1e+02 Score=27.35 Aligned_cols=50 Identities=24% Similarity=0.359 Sum_probs=19.1
Q ss_pred hCCChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCCCHHHHHHHHHHHH
Q 006120 281 AMGEDERAIEVFQKAIDLKPGHVDALYNLGGLYMDLGAGETEEAKKALKEAL 332 (660)
Q Consensus 281 ~~g~~~~A~~~~~~al~~~p~~~~a~~~La~~~~~~~~g~~~eA~~~~~~al 332 (660)
.+|+-++-.+.++...+....+++.+..+|.+|.+. |+..+|.+.+++|-
T Consensus 98 ~~~kkDqLdki~~~l~kn~~~~p~~L~kia~Ay~kl--g~~r~~~ell~~AC 147 (161)
T PF09205_consen 98 KQGKKDQLDKIYNELKKNEEINPEFLVKIANAYKKL--GNTREANELLKEAC 147 (161)
T ss_dssp HTT-HHHHHHHHHHH-----S-HHHHHHHHHHHHHT--T-HHHHHHHHHHHH
T ss_pred HhccHHHHHHHHHHHhhccCCCHHHHHHHHHHHHHh--cchhhHHHHHHHHH
Confidence 344444433444443333333344444455555444 44444444444443
No 456
>PF14863 Alkyl_sulf_dimr: Alkyl sulfatase dimerisation; PDB: 2YHE_C 2CG2_A 2CG3_A 2CFU_A 2CFZ_A.
Probab=53.06 E-value=49 Score=29.63 Aligned_cols=50 Identities=12% Similarity=0.058 Sum_probs=40.9
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCH
Q 006120 126 DGHMAIGRVLYEHQLFKEALVSFKRACELQPTDVRPHFRAGNCLYVLGRY 175 (660)
Q Consensus 126 ~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~ 175 (660)
+.....+...+..|++.-|.++...++..+|++..+....+.++..+|.-
T Consensus 71 d~vl~~A~~~~~~gd~~wA~~L~d~l~~adp~n~~ar~l~A~al~~lg~~ 120 (141)
T PF14863_consen 71 DKVLERAQAALAAGDYQWAAELLDHLVFADPDNEEARQLKADALEQLGYQ 120 (141)
T ss_dssp HHHHHHHHHHHHCT-HHHHHHHHHHHHHH-TT-HHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHHHh
Confidence 45667888889999999999999999999999999999999988877643
No 457
>smart00299 CLH Clathrin heavy chain repeat homology.
Probab=51.91 E-value=1.7e+02 Score=25.71 Aligned_cols=37 Identities=11% Similarity=0.071 Sum_probs=22.9
Q ss_pred HHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHc
Q 006120 136 YEHQLFKEALVSFKRACELQPTDVRPHFRAGNCLYVL 172 (660)
Q Consensus 136 ~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~ 172 (660)
...+.....+.+++..+..++.++..+..+..+|...
T Consensus 18 ~~~~~~~~l~~yLe~~~~~~~~~~~~~~~li~ly~~~ 54 (140)
T smart00299 18 EKRNLLEELIPYLESALKLNSENPALQTKLIELYAKY 54 (140)
T ss_pred HhCCcHHHHHHHHHHHHccCccchhHHHHHHHHHHHH
Confidence 3445666677777776666655566666666666543
No 458
>TIGR02710 CRISPR-associated protein, TIGR02710 family. Members of this family are found, exclusively in the vicinity of CRISPR repeats and other CRISPR-associated (cas) genes, in Methanothermobacter thermautotrophicus (Archaea), Thermus thermophilus (Deinococcus-Thermus), Chloroflexus aurantiacus (Chloroflexi), and Thermomicrobium roseum (Thermomicrobia).
Probab=51.88 E-value=3e+02 Score=29.20 Aligned_cols=60 Identities=12% Similarity=-0.053 Sum_probs=42.0
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHHHhccCCCchhchHHHHHHHHH--HHHHHCCCHHHHHHHHHH
Q 006120 164 RAGNCLYVLGRYREAKEEYLLALEAAETGGNQWAYLLPQIYVNLG--IALEGEGMVLSACEYYRE 226 (660)
Q Consensus 164 ~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~la--~~~~~~g~~~~A~~~~~~ 226 (660)
..+..++..++|..|...+.+++...++.... . ....+..+. ..+...-++++|..++++
T Consensus 135 ~~~r~l~n~~dy~aA~~~~~~L~~r~l~~~~~-~--~~~~~~~l~~~y~~WD~fd~~~A~~~L~~ 196 (380)
T TIGR02710 135 GYARRAINAFDYLFAHARLETLLRRLLSAVNH-T--FYEAMIKLTRAYLHWDRFEHEEALDYLND 196 (380)
T ss_pred HHHHHHHHhcChHHHHHHHHHHHhcccChhhh-h--HHHHHHHHHHHHHHHHccCHHHHHHHHhh
Confidence 35567889999999999999999875432211 1 334444444 445677889999999985
No 459
>KOG4521 consensus Nuclear pore complex, Nup160 component [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=51.42 E-value=3.4e+02 Score=32.84 Aligned_cols=182 Identities=16% Similarity=0.121 Sum_probs=92.0
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHH------HcCC----HHHHHHHHHHHHHHhccCCCc
Q 006120 126 DGHMAIGRVLYEHQLFKEALVSFKRACELQPTDVRPHFRAGNCLY------VLGR----YREAKEEYLLALEAAETGGNQ 195 (660)
Q Consensus 126 ~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~------~~g~----~~~A~~~~~~al~~~p~~~~~ 195 (660)
...+.+|.+|...|+..+|+.+|.++..-.... .++..+..-.. ..|+ ...|..+|.+++++.
T Consensus 921 v~rfmlg~~yl~tge~~kAl~cF~~a~Sg~ge~-~aL~~lv~~~~p~~~sv~dG~t~s~e~t~lhYYlkv~rll------ 993 (1480)
T KOG4521|consen 921 VIRFMLGIAYLGTGEPVKALNCFQSALSGFGEG-NALRKLVYFLLPKRFSVADGKTPSEELTALHYYLKVVRLL------ 993 (1480)
T ss_pred HHHHhhheeeecCCchHHHHHHHHHHhhccccH-HHHHHHHHHhcCCCCchhcCCCCCchHHHHHHHHHHHHHH------
Confidence 445778999999999999999999998654321 23222221110 1222 122344444444433
Q ss_pred hhchHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCc----HHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCC---
Q 006120 196 WAYLLPQIYVNLGIALEGEGMVLSACEYYRESAILCPTH----FRALKLLGSALFGVGEYRAAVKALEEAIFIKPDY--- 268 (660)
Q Consensus 196 ~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~----~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~--- 268 (660)
..-+-.+.+++...+|++.-|++ +.....+-+-....|.+-+|...+ -.+|+.
T Consensus 994 ----------------e~hn~~E~vcQlA~~AIe~l~dd~ps~a~~~t~vFnhhldlgh~~qAy~ai----~~npdserr 1053 (1480)
T KOG4521|consen 994 ----------------EEHNHAEEVCQLAVKAIENLPDDNPSVALISTTVFNHHLDLGHWFQAYKAI----LRNPDSERR 1053 (1480)
T ss_pred ----------------HHhccHHHHHHHHHHHHHhCCCcchhHHHHHHHHHHhhhchhhHHHHHHHH----HcCCcHHHH
Confidence 33344555555556666543322 333444444455566666665433 234442
Q ss_pred HHHHHHHHHHHHhCCCh------------HHHHH-HHHHHHHhCCCCHHHHHHHHHHHH-HhcCCCHHHHHH-HHHHHHc
Q 006120 269 ADAHCDLASALHAMGED------------ERAIE-VFQKAIDLKPGHVDALYNLGGLYM-DLGAGETEEAKK-ALKEALK 333 (660)
Q Consensus 269 ~~~~~~la~~~~~~g~~------------~~A~~-~~~~al~~~p~~~~a~~~La~~~~-~~~~g~~~eA~~-~~~~al~ 333 (660)
-..+..+-.++.+.|++ ++-.. ..+.+-...|....-++.+-.++. .. +++.+|-. .|+.+..
T Consensus 1054 rdcLRqlvivLfecg~l~~L~~fpfigl~~eve~~l~esaaRs~~~mk~nyYelLYAfh~~R--hN~RkaatvMYEyamr 1131 (1480)
T KOG4521|consen 1054 RDCLRQLVIVLFECGELEALATFPFIGLEQEVEDFLRESAARSSPSMKKNYYELLYAFHVAR--HNFRKAATVMYEYAMR 1131 (1480)
T ss_pred HHHHHHHHHHHHhccchHHHhhCCccchHHHHHHHHHHHHhhcCccccccHHHHHHHHHHhh--cchhHHHHHHHHHHHH
Confidence 22334444444444443 23333 344444444544444444444443 33 66666543 4666666
Q ss_pred ccC
Q 006120 334 MTN 336 (660)
Q Consensus 334 l~p 336 (660)
+..
T Consensus 1132 l~s 1134 (1480)
T KOG4521|consen 1132 LES 1134 (1480)
T ss_pred hcc
Confidence 653
No 460
>PF10952 DUF2753: Protein of unknown function (DUF2753); InterPro: IPR020206 This entry represents a group of uncharacterised proteins.
Probab=51.16 E-value=81 Score=27.35 Aligned_cols=59 Identities=15% Similarity=0.230 Sum_probs=36.7
Q ss_pred HHHHHHHHHCCCHHHHHHHHHHHHHhCCC---------------CHHHHHHHHHHHHhCCChHHHHHHHHHHHH
Q 006120 239 KLLGSALFGVGEYRAAVKALEEAIFIKPD---------------YADAHCDLASALHAMGEDERAIEVFQKAID 297 (660)
Q Consensus 239 ~~lg~~~~~~g~~~~A~~~~~~al~~~p~---------------~~~~~~~la~~~~~~g~~~~A~~~~~~al~ 297 (660)
..+|....+.+++-.++-.|++|+.+..+ ......|||..+..+|+.+-.++|++-|-+
T Consensus 5 tllAd~a~~~~~~l~si~hYQqAls~se~~~~~~~~el~dll~i~VisCHNLA~FWR~~gd~~yELkYLqlASE 78 (140)
T PF10952_consen 5 TLLADQAFKEADPLRSILHYQQALSLSEEIDESNEIELEDLLTISVISCHNLADFWRSQGDSDYELKYLQLASE 78 (140)
T ss_pred HHHHHHHhhcccHHHHHHHHHHHHHHHHHhcccccccHHHHHHHHHHHHhhHHHHHHHcCChHHHHHHHHHHHH
Confidence 34555555556666666666665554211 123456788888888888888888876543
No 461
>KOG1279 consensus Chromatin remodeling factor subunit and related transcription factors [Chromatin structure and dynamics]
Probab=50.71 E-value=6.8 Score=42.67 Aligned_cols=63 Identities=22% Similarity=0.556 Sum_probs=45.4
Q ss_pred cCccccCCCccc----cccccccccccccccc-cccccccccccCCCCCCCCccccchhhccCChhHhhhhhhh
Q 006120 582 AGDRNRHGRHVC----SVCRYPIIGSRFKEMK-SHFSLCSQCYSEGKVPPTFKQDEYKFKEYGSESEAMKDKCI 650 (660)
Q Consensus 582 ~~~~~~~~~~~~----~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 650 (660)
.++..+++-.+| ..|.=| +|.-++ ..+++|..||..|-.|..++-..| +-+|+.....|-.+-
T Consensus 193 ~~~~~~~~~~l~~~~c~~~~~~----~~~~~~~~~~~~c~~c~~~g~~~~~~~~~Df--~~~~~~~~~~WT~qE 260 (506)
T KOG1279|consen 193 KSLHINAGEHLCAIHCFIKEDP----YYYDLTNRDVNLCADCYDQGEFPSEFKKSDF--KVIGESARPNWTEQE 260 (506)
T ss_pred cccccChHhhccccchhccccc----hhhhcchhhhhhhHHHHhcCCccCccccccc--hhccccCCCCccHHH
Confidence 456666664443 333322 465554 469999999999999999998887 888988888876553
No 462
>PLN02964 phosphatidylserine decarboxylase
Probab=49.96 E-value=32 Score=38.97 Aligned_cols=151 Identities=15% Similarity=0.202 Sum_probs=80.0
Q ss_pred hccCCC---cchHHHHHHHHHHhhhhccCCCcccccchhhhhhhcccCCCCHHH-HHHhhhhhhcccccCCCCccchhcc
Q 006120 447 LHFLKP---ETFQGAVKAINERILSVLDETGSARVDLGMFYAILAPICSGSPEK-RKRVAFDALLWRPVNEGSTQVRKVD 522 (660)
Q Consensus 447 iGY~S~---df~~H~v~~l~~~~l~~hDr~g~~~fev~~y~~~~~~~~~~~~~~-r~r~~~d~~~~~~~~~~~a~~i~~D 522 (660)
+||+.- +|-...+..+ ...|..+|++|+|. ++.....+++-..+..... -++..+.. .+.++. ..+--.+
T Consensus 127 v~~~e~~~t~f~~kqi~el-keaF~lfD~dgdG~-iLg~ilrslG~~~pte~e~~fi~~mf~~---~D~Dgd-G~IdfdE 200 (644)
T PLN02964 127 VGYCELDLFDFVTQEPESA-CESFDLLDPSSSNK-VVGSIFVSCSIEDPVETERSFARRILAI---VDYDED-GQLSFSE 200 (644)
T ss_pred hhheeecHhhccHHHHHHH-HHHHHHHCCCCCCc-CHHHHHHHhCCCCCCHHHHHHHHHHHHH---hCCCCC-CeEcHHH
Confidence 899998 4555555444 46799999998864 3444433443111112111 14444441 122221 2233333
Q ss_pred HHHHHHHhHHHhccCCCchhhhhhhccCCCcccchhHHhhhccCCCCcchhhhhhhhcccCccccCCCcccccccccccc
Q 006120 523 AVRYIKLLRAVYIPSHGVSEMMEVHGEADSSMVSLSEFLVMFDDPDWGFGIMSTLMKLEAGDRNRHGRHVCSVCRYPIIG 602 (660)
Q Consensus 523 ~~~~l~dL~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 602 (660)
-+.++..+..- .+...+.++..+...++.-.|++.||..++.....++ +.--+|.+|.-+.-.
T Consensus 201 Fl~lL~~lg~~-~seEEL~eaFk~fDkDgdG~Is~dEL~~vL~~~~~~~----------------~~~~~cp~cg~~l~~ 263 (644)
T PLN02964 201 FSDLIKAFGNL-VAANKKEELFKAADLNGDGVVTIDELAALLALQQEQE----------------PIINNCPVCGEALGV 263 (644)
T ss_pred HHHHHHHhccC-CCHHHHHHHHHHhCCCCCCcCCHHHHHHHHHhcccCc----------------chhhhchhhcCcccc
Confidence 33333322110 0111133344444456667899999999888654322 224579999876433
Q ss_pred -ccccccccccccccccccCCCC
Q 006120 603 -SRFKEMKSHFSLCSQCYSEGKV 624 (660)
Q Consensus 603 -~~~~~~~~~~~~~~~~~~~~~~ 624 (660)
..-..|. |+.+|. .+|.|
T Consensus 264 ~~~~~~ii-H~~~c~---~~~~~ 282 (644)
T PLN02964 264 SDKLNAMI-HMTLCF---DEGTG 282 (644)
T ss_pred hhhHHHHH-HHHHhh---ccccc
Confidence 2344455 999998 56655
No 463
>PF01535 PPR: PPR repeat; InterPro: IPR002885 This entry represents the PPR repeat. Pentatricopeptide repeat (PPR) proteins are characterised by tandem repeats of a degenerate 35 amino acid motif []. Most of PPR proteins have roles in mitochondria or plastid []. PPR repeats were discovered while screening Arabidopsis proteins for those predicted to be targeted to mitochondria or chloroplast [, ]. Some of these proteins have been shown to play a role in post-transcriptional processes within organelles and they are thought to be sequence-specific RNA-binding proteins [, , ]. Plant genomes have between one hundred to five hundred PPR genes per genome whereas non-plant genomes encode two to six PPR proteins. Although no PPR structures are yet known, the motif is predicted to fold into a helix-turn-helix structure similar to those found in the tetratricopeptide repeat (TPR) family (see PDOC50005 from PROSITEDOC) []. The plant PPR protein family has been divided in two subfamilies on the basis of their motif content and organisation [, ]. Examples of PPR repeat-containing proteins include PET309 P32522 from SWISSPROT, which may be involved in RNA stabilisation [], and crp1, which is involved in RNA processing []. The repeat is associated with a predicted plant protein O49549 from SWISSPROT that has a domain organisation similar to the human BRCA1 protein.
Probab=49.70 E-value=26 Score=21.25 Aligned_cols=22 Identities=41% Similarity=0.567 Sum_probs=9.6
Q ss_pred HHHHHHHhCCChHHHHHHHHHH
Q 006120 274 DLASALHAMGEDERAIEVFQKA 295 (660)
Q Consensus 274 ~la~~~~~~g~~~~A~~~~~~a 295 (660)
.+-..|.+.|++++|...+++.
T Consensus 5 ~li~~~~~~~~~~~a~~~~~~M 26 (31)
T PF01535_consen 5 SLISGYCKMGQFEEALEVFDEM 26 (31)
T ss_pred HHHHHHHccchHHHHHHHHHHH
Confidence 3344444444444444444443
No 464
>PF08655 DASH_Ask1: DASH complex subunit Ask1; InterPro: IPR013964 The DASH complex is a ~10 subunit microtubule-binding complex that is transferred to the kinetochore prior to mitosis []. In Saccharomyces cerevisiae (Baker's yeast) DASH forms both rings and spiral structures on microtubules in vitro [, ]. Components of the DASH complex, including Dam1, Duo1, Spc34, Dad1 and Ask1, are essential and connect the centromere to the plus end of spindle microtubules [].
Probab=49.42 E-value=3.2 Score=31.46 Aligned_cols=40 Identities=28% Similarity=0.561 Sum_probs=34.7
Q ss_pred cccccccccccccccCCCCCCCCccccchhhccCChhHhhhhhhhhcc
Q 006120 606 KEMKSHFSLCSQCYSEGKVPPTFKQDEYKFKEYGSESEAMKDKCICFT 653 (660)
Q Consensus 606 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 653 (660)
.|+-+|||-|+++-...-+|. -++||..++.++|.+.+..
T Consensus 13 QeID~N~s~~~~iit~~IlP~--------v~rY~~~s~~i~~~~~fwk 52 (66)
T PF08655_consen 13 QEIDSNFSRCHRIITDKILPA--------VERYGESSEKIWDSAKFWK 52 (66)
T ss_pred HHHHHHHHHHHHHHhcccchH--------HHHHHHHHHHHHHHHhHHH
Confidence 477899999999999988884 6899999999999987654
No 465
>PF10952 DUF2753: Protein of unknown function (DUF2753); InterPro: IPR020206 This entry represents a group of uncharacterised proteins.
Probab=48.62 E-value=1.6e+02 Score=25.63 Aligned_cols=66 Identities=14% Similarity=-0.011 Sum_probs=38.0
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHhccCCCch-------hchHHHHHHHHHHHHHHCCCHHHHHHHHHHH
Q 006120 162 HFRAGNCLYVLGRYREAKEEYLLALEAAETGGNQW-------AYLLPQIYVNLGIALEGEGMVLSACEYYRES 227 (660)
Q Consensus 162 ~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~-------~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a 227 (660)
+..+|....+.+++-.++-.|++|+.+..+..... .........+||..+..+|+.+=.+.|++-|
T Consensus 4 htllAd~a~~~~~~l~si~hYQqAls~se~~~~~~~~el~dll~i~VisCHNLA~FWR~~gd~~yELkYLqlA 76 (140)
T PF10952_consen 4 HTLLADQAFKEADPLRSILHYQQALSLSEEIDESNEIELEDLLTISVISCHNLADFWRSQGDSDYELKYLQLA 76 (140)
T ss_pred HHHHHHHHhhcccHHHHHHHHHHHHHHHHHhcccccccHHHHHHHHHHHHhhHHHHHHHcCChHHHHHHHHHH
Confidence 34556666666666666666666666544321000 0013345667777777777777777776654
No 466
>PF11846 DUF3366: Domain of unknown function (DUF3366); InterPro: IPR021797 This domain is functionally uncharacterised. This domain is found in bacteria. This presumed domain is about 200 amino acids in length.
Probab=48.23 E-value=80 Score=29.79 Aligned_cols=32 Identities=28% Similarity=0.320 Sum_probs=15.8
Q ss_pred HHHHHHHHHHHHhCCChHHHHHHHHHHHHhCC
Q 006120 269 ADAHCDLASALHAMGEDERAIEVFQKAIDLKP 300 (660)
Q Consensus 269 ~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p 300 (660)
+..+.+++.++..+|+.++|....+++..+.|
T Consensus 144 ~~~~~~~a~~l~~~G~~~eA~~~~~~~~~lyP 175 (193)
T PF11846_consen 144 PNVYQRYALALALLGDPEEARQWLARARRLYP 175 (193)
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC
Confidence 44444445555555555555555555444444
No 467
>PF13226 DUF4034: Domain of unknown function (DUF4034)
Probab=46.60 E-value=2.9e+02 Score=27.88 Aligned_cols=136 Identities=16% Similarity=0.087 Sum_probs=78.9
Q ss_pred HHHHHcCCHHHHHHHHHHHHHHhccCCCchhchHHHHHHHHHHHHHHCCC----HHHHHHHHHHHHHhCCCcHHHHHHHH
Q 006120 167 NCLYVLGRYREAKEEYLLALEAAETGGNQWAYLLPQIYVNLGIALEGEGM----VLSACEYYRESAILCPTHFRALKLLG 242 (660)
Q Consensus 167 ~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~la~~~~~~g~----~~~A~~~~~~al~~~p~~~~~~~~lg 242 (660)
..+...++|++=...+.+..+...+..+.. ........+..+..... ...-.+.++.=++..|++..++..+|
T Consensus 8 r~LL~~~~f~eLd~~l~~~~~~~~~s~~~e---~~Y~~~~~~~~l~D~~~~~~~~~~~~~~LkaWv~a~P~Sy~A~La~g 84 (277)
T PF13226_consen 8 RELLQARDFAELDALLARLLQAWLQSRDGE---QRYFRAWMSSTLFDMDSVVDAWQARLAVLKAWVAACPKSYHAHLAMG 84 (277)
T ss_pred HHHHHhCcHHHHHHHHHHHHHhhhhccCcc---chHHHHHhhccccCcchhhhHHHhHHHHHHHHHHHCCCChHHHHHHH
Confidence 456677888877777777765544322221 11011111111111111 12355666666778999999988888
Q ss_pred HHHHHCCCHHHHHHHHHHHHHhC------CCCHHHHHHHHHHHHhCCChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHh
Q 006120 243 SALFGVGEYRAAVKALEEAIFIK------PDYADAHCDLASALHAMGEDERAIEVFQKAIDLKPGHVDALYNLGGLYMDL 316 (660)
Q Consensus 243 ~~~~~~g~~~~A~~~~~~al~~~------p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~La~~~~~~ 316 (660)
..+... |-... .....-|.....+ .+.|...+.+|++++|....+...+-.+-...
T Consensus 85 ~~~~~~------------Aw~~RG~~~A~~V~~~~W~~~~~~------~d~A~~~ll~A~~l~pr~~~A~~~m~~~s~~f 146 (277)
T PF13226_consen 85 MYWVHR------------AWDIRGSGYASTVTEAQWLGAHQA------CDQAVAALLKAIELSPRPVAAAIGMINISAYF 146 (277)
T ss_pred HHHHHH------------HHHHHccchhcccCHHHHHHHHHH------HHHHHHHHHHHHhcCCCchHHHHHHHHHHhhc
Confidence 776542 22221 1123334333333 46788999999999999988888888887777
Q ss_pred cCCCHHHHH
Q 006120 317 GAGETEEAK 325 (660)
Q Consensus 317 ~~g~~~eA~ 325 (660)
|..+-=.
T Consensus 147 --geP~WL~ 153 (277)
T PF13226_consen 147 --GEPDWLA 153 (277)
T ss_pred --CCchHHH
Confidence 7765433
No 468
>PF14929 TAF1_subA: TAF RNA Polymerase I subunit A
Probab=46.44 E-value=3.9e+02 Score=29.88 Aligned_cols=85 Identities=16% Similarity=-0.021 Sum_probs=42.7
Q ss_pred HHHHHHCC--CHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHH---HHhCCCCHHHHHHHHHHHHh-
Q 006120 208 GIALEGEG--MVLSACEYYRESAILCPTHFRALKLLGSALFGVGEYRAAVKALEEA---IFIKPDYADAHCDLASALHA- 281 (660)
Q Consensus 208 a~~~~~~g--~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~a---l~~~p~~~~~~~~la~~~~~- 281 (660)
+.++...+ .-..-..+|+..+..+|........+...+.. ...+.+.++-. +.+.| ...+|..++.++.+
T Consensus 349 ~~lle~~d~~~~~~l~~~~e~~~~~~P~~~~~le~l~~~~~~---~~~~~~Lle~i~~~l~~~~-s~~iwle~~~~~l~~ 424 (547)
T PF14929_consen 349 AHLLEYFDQNNSSVLSSCLEDCLKKDPTMSYSLERLILLHQK---DYSAEQLLEMIALHLDLVP-SHPIWLEFVSCFLKN 424 (547)
T ss_pred HHHHHHhCcccHHHHHHHHHHHhcCCCcHHHHHHHHHhhhhh---HHHHHHHHHHHHHHhhcCC-CchHHHHHHHHHHhc
Confidence 34444444 44555566666666666665555444444433 33344444421 22232 34566666666666
Q ss_pred CCChHHHHHHHHHHH
Q 006120 282 MGEDERAIEVFQKAI 296 (660)
Q Consensus 282 ~g~~~~A~~~~~~al 296 (660)
.++++.-.+..+.++
T Consensus 425 ~~~~~~~~e~~~~~l 439 (547)
T PF14929_consen 425 PSRFEDKEEDHKSAL 439 (547)
T ss_pred cccccccHHHHHHHH
Confidence 555554444555554
No 469
>KOG4521 consensus Nuclear pore complex, Nup160 component [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=46.06 E-value=5.6e+02 Score=31.21 Aligned_cols=131 Identities=21% Similarity=0.108 Sum_probs=81.6
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhccCCCchhchHHHHHHHHHHHHH------HCCC----HHHHHHHHHHHH
Q 006120 159 VRPHFRAGNCLYVLGRYREAKEEYLLALEAAETGGNQWAYLLPQIYVNLGIALE------GEGM----VLSACEYYRESA 228 (660)
Q Consensus 159 ~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~la~~~~------~~g~----~~~A~~~~~~al 228 (660)
+...+.+|.+|...|+..+|+.+|.+|..-.-. ..++..+..-.. ..|+ -..|..||.+++
T Consensus 920 ~v~rfmlg~~yl~tge~~kAl~cF~~a~Sg~ge---------~~aL~~lv~~~~p~~~sv~dG~t~s~e~t~lhYYlkv~ 990 (1480)
T KOG4521|consen 920 PVIRFMLGIAYLGTGEPVKALNCFQSALSGFGE---------GNALRKLVYFLLPKRFSVADGKTPSEELTALHYYLKVV 990 (1480)
T ss_pred HHHHHhhheeeecCCchHHHHHHHHHHhhcccc---------HHHHHHHHHHhcCCCCchhcCCCCCchHHHHHHHHHHH
Confidence 455678899999999999999999999865433 122222221110 2232 223566777765
Q ss_pred HhCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCC----HHHHHHHHHHHHhCCChHHHHHHHHHHHHhCCCC--
Q 006120 229 ILCPTHFRALKLLGSALFGVGEYRAAVKALEEAIFIKPDY----ADAHCDLASALHAMGEDERAIEVFQKAIDLKPGH-- 302 (660)
Q Consensus 229 ~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~----~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~-- 302 (660)
++ +...+-.+.+.+....|++.-|++ +..+..+=+-...+|.+-+|... +-.+|+.
T Consensus 991 rl--------------le~hn~~E~vcQlA~~AIe~l~dd~ps~a~~~t~vFnhhldlgh~~qAy~a----i~~npdser 1052 (1480)
T KOG4521|consen 991 RL--------------LEEHNHAEEVCQLAVKAIENLPDDNPSVALISTTVFNHHLDLGHWFQAYKA----ILRNPDSER 1052 (1480)
T ss_pred HH--------------HHHhccHHHHHHHHHHHHHhCCCcchhHHHHHHHHHHhhhchhhHHHHHHH----HHcCCcHHH
Confidence 53 444566777888888888775544 44455555666778888888754 3445653
Q ss_pred -HHHHHHHHHHHHHh
Q 006120 303 -VDALYNLGGLYMDL 316 (660)
Q Consensus 303 -~~a~~~La~~~~~~ 316 (660)
-..+..+..++.+.
T Consensus 1053 rrdcLRqlvivLfec 1067 (1480)
T KOG4521|consen 1053 RRDCLRQLVIVLFEC 1067 (1480)
T ss_pred HHHHHHHHHHHHHhc
Confidence 23556666666655
No 470
>PF14863 Alkyl_sulf_dimr: Alkyl sulfatase dimerisation; PDB: 2YHE_C 2CG2_A 2CG3_A 2CFU_A 2CFZ_A.
Probab=46.03 E-value=63 Score=28.93 Aligned_cols=44 Identities=27% Similarity=0.388 Sum_probs=20.6
Q ss_pred HHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhC
Q 006120 239 KLLGSALFGVGEYRAAVKALEEAIFIKPDYADAHCDLASALHAM 282 (660)
Q Consensus 239 ~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~ 282 (660)
...+.-.+..|++.-|.++...++..+|++..+...++.++.++
T Consensus 74 l~~A~~~~~~gd~~wA~~L~d~l~~adp~n~~ar~l~A~al~~l 117 (141)
T PF14863_consen 74 LERAQAALAAGDYQWAAELLDHLVFADPDNEEARQLKADALEQL 117 (141)
T ss_dssp HHHHHHHHHCT-HHHHHHHHHHHHHH-TT-HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHH
Confidence 33344444455555555555555555555555555555544433
No 471
>COG1773 Rubredoxin [Energy production and conversion]
Probab=45.79 E-value=11 Score=27.37 Aligned_cols=30 Identities=33% Similarity=0.863 Sum_probs=23.7
Q ss_pred Cccccccccccc------------ccccccccccccccccccc
Q 006120 590 RHVCSVCRYPII------------GSRFKEMKSHFSLCSQCYS 620 (660)
Q Consensus 590 ~~~~~~~~~~~~------------~~~~~~~~~~~~~~~~~~~ 620 (660)
+..|++|+|.-+ |-||.++..++ .|..|--
T Consensus 3 ~~~C~~CG~vYd~e~Gdp~~gi~pgT~fedlPd~w-~CP~Cg~ 44 (55)
T COG1773 3 RWRCSVCGYVYDPEKGDPRCGIAPGTPFEDLPDDW-VCPECGV 44 (55)
T ss_pred ceEecCCceEeccccCCccCCCCCCCchhhCCCcc-CCCCCCC
Confidence 678999999654 67899998876 6888854
No 472
>KOG1497 consensus COP9 signalosome, subunit CSN4 [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=45.70 E-value=3.5e+02 Score=27.74 Aligned_cols=102 Identities=8% Similarity=-0.052 Sum_probs=60.4
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhccCCCchhchHHHHHHHHHHHHHHCCCHHHHHHHHHHHHH--hCCCcHH
Q 006120 159 VRPHFRAGNCLYVLGRYREAKEEYLLALEAAETGGNQWAYLLPQIYVNLGIALEGEGMVLSACEYYRESAI--LCPTHFR 236 (660)
Q Consensus 159 ~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~--~~p~~~~ 236 (660)
......+|.+|...++|..|...+.-. .++..............+..+|.+|...++..+|..+..++-- .+..+..
T Consensus 103 ~~irl~LAsiYE~Eq~~~~aaq~L~~I-~~~tg~~~~d~~~kl~l~iriarlyLe~~d~veae~~inRaSil~a~~~Ne~ 181 (399)
T KOG1497|consen 103 ASIRLHLASIYEKEQNWRDAAQVLVGI-PLDTGQKAYDVEQKLLLCIRIARLYLEDDDKVEAEAYINRASILQAESSNEQ 181 (399)
T ss_pred HHHHHHHHHHHHHhhhHHHHHHHHhcc-CcccchhhhhhHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHhhhcccCHH
Confidence 356778999999999999988766432 2221111111111456778888888888888888888877632 2334443
Q ss_pred HHHH----HHHHHHHCCCHHHHHHHHHHH
Q 006120 237 ALKL----LGSALFGVGEYRAAVKALEEA 261 (660)
Q Consensus 237 ~~~~----lg~~~~~~g~~~~A~~~~~~a 261 (660)
.... .|+++-..+++-+|.+.|.+.
T Consensus 182 Lqie~kvc~ARvlD~krkFlEAAqrYyel 210 (399)
T KOG1497|consen 182 LQIEYKVCYARVLDYKRKFLEAAQRYYEL 210 (399)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3322 244444455555555555443
No 473
>COG5259 RSC8 RSC chromatin remodeling complex subunit RSC8 [Chromatin structure and dynamics / Transcription]
Probab=45.66 E-value=12 Score=39.52 Aligned_cols=44 Identities=25% Similarity=0.852 Sum_probs=37.5
Q ss_pred Cccccccccccccccccccc-cccccccccccCCCCCCCCccccc
Q 006120 590 RHVCSVCRYPIIGSRFKEMK-SHFSLCSQCYSEGKVPPTFKQDEY 633 (660)
Q Consensus 590 ~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~ 633 (660)
-.+|.-|+-.-+-.|.--.+ ...++|+.||-.|-.|+.|.--.|
T Consensus 224 ~~~C~~cG~~~~~t~y~nlra~~~n~C~~C~~qg~f~s~~~ssDf 268 (531)
T COG5259 224 PSSCSCCGNKSFNTRYHNLRAEKYNSCSECYDQGRFPSEFTSSDF 268 (531)
T ss_pred CceeeccCccccchhhhhhhhhhcccchHHHhcCcCCCccccccc
Confidence 58999999888888887776 568899999999999999876665
No 474
>PRK12798 chemotaxis protein; Reviewed
Probab=45.60 E-value=4.1e+02 Score=28.42 Aligned_cols=181 Identities=16% Similarity=0.099 Sum_probs=107.9
Q ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhccCCCchhchHHHHHHHHHH-HHHHCCCHHHHHHHHHHHHHhCCCcH-
Q 006120 158 DVRPHFRAGNCLYVLGRYREAKEEYLLALEAAETGGNQWAYLLPQIYVNLGI-ALEGEGMVLSACEYYRESAILCPTHF- 235 (660)
Q Consensus 158 ~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~la~-~~~~~g~~~~A~~~~~~al~~~p~~~- 235 (660)
+.+.-..-|..-+-.|+..+|.+.+...-.. ..+. ..-.++.|.. ......+..+|+.+|+.+--+.|...
T Consensus 111 ~~d~~L~~g~laY~~Gr~~~a~~~La~i~~~---~l~~----~lg~~laLv~a~l~~~~dP~~Al~~lD~aRLlaPGTLv 183 (421)
T PRK12798 111 NFDQRLADGALAYLSGRGREARKLLAGVAPE---YLPA----ELGAYLALVQGNLMVATDPATALKLLDQARLLAPGTLV 183 (421)
T ss_pred hhhHHHHHHHHHHHcCCHHHHHHHhhcCChh---hcCc----hhhhHHHHHHHHHhcccCHHHHHHHHHHHHHhCCchHH
Confidence 4455555566677788888887777554322 2111 1222333322 34456688888888888887888752
Q ss_pred --HHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHH---HHHHHHHHHhCCChHHHHHHHHHHHHh-CCCC-HHHHHH
Q 006120 236 --RALKLLGSALFGVGEYRAAVKALEEAIFIKPDYADA---HCDLASALHAMGEDERAIEVFQKAIDL-KPGH-VDALYN 308 (660)
Q Consensus 236 --~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~---~~~la~~~~~~g~~~~A~~~~~~al~~-~p~~-~~a~~~ 308 (660)
.++-.-..+..+.|+.+++..+-.+.+......+.+ +..+...+...++-.. ...+...+.. +|.. ...|..
T Consensus 184 EEAALRRsi~la~~~g~~~rf~~la~~Y~rRF~~S~YA~~F~~~F~~~~~~~~d~~~-~~~l~~~ls~~d~~~q~~lYL~ 262 (421)
T PRK12798 184 EEAALRRSLFIAAQLGDADKFEALARNYLRRFRHSPYASQFAQRFVDLVVRLDDEIR-DARLVEILSFMDPERQRELYLR 262 (421)
T ss_pred HHHHHHHhhHHHHhcCcHHHHHHHHHHHHHHhccCchHHHHHHHHHHHHHhcccccc-HHHHHHHHHhcCchhHHHHHHH
Confidence 244444455567888888888888888776665443 3334444444442222 2335555544 4433 456777
Q ss_pred HHHHHHHhcCCCHHHHHHHHHHHHcccCChhHHHHHHHHH
Q 006120 309 LGGLYMDLGAGETEEAKKALKEALKMTNRVELHDAVSHLK 348 (660)
Q Consensus 309 La~~~~~~~~g~~~eA~~~~~~al~l~p~~~~~~~~~~l~ 348 (660)
++..-... |+.+-|...-++++.+.+..........|.
T Consensus 263 iAR~Ali~--Gk~~lA~~As~~A~~L~~~~~~~~~ra~LY 300 (421)
T PRK12798 263 IARAALID--GKTELARFASERALKLADPDSADAARARLY 300 (421)
T ss_pred HHHHHHHc--CcHHHHHHHHHHHHHhccCCCcchHHHHHH
Confidence 77777766 888888888888888875544433444443
No 475
>cd02682 MIT_AAA_Arch MIT: domain contained within Microtubule Interacting and Trafficking molecules. This sub-family of MIT domains is found in mostly archaebacterial AAA-ATPases. The molecular function of the MIT domain is unclear.
Probab=45.55 E-value=1.3e+02 Score=23.73 Aligned_cols=29 Identities=14% Similarity=0.094 Sum_probs=20.0
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Q 006120 126 DGHMAIGRVLYEHQLFKEALVSFKRACEL 154 (660)
Q Consensus 126 ~~~~~lg~~~~~~g~~~~A~~~~~~al~~ 154 (660)
..+...|.-+-..|++++|+.+|+++++.
T Consensus 7 ~~~a~~AVe~D~~gr~~eAi~~Y~~aIe~ 35 (75)
T cd02682 7 RKYAINAVKAEKEGNAEDAITNYKKAIEV 35 (75)
T ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHH
Confidence 44556666677778888777777777654
No 476
>COG5536 BET4 Protein prenyltransferase, alpha subunit [Posttranslational modification, protein turnover, chaperones]
Probab=45.44 E-value=2.9e+02 Score=27.84 Aligned_cols=182 Identities=13% Similarity=-0.039 Sum_probs=107.7
Q ss_pred HHHHHHHHHHhCCCCHHHHHHHHHHHHH--------cCCHHHHHHHHHHHHHHhccCCCchhchHHHHHHHHHHHHHHC-
Q 006120 144 ALVSFKRACELQPTDVRPHFRAGNCLYV--------LGRYREAKEEYLLALEAAETGGNQWAYLLPQIYVNLGIALEGE- 214 (660)
Q Consensus 144 A~~~~~~al~~~p~~~~~~~~la~~~~~--------~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~la~~~~~~- 214 (660)
|++.-...+..+|..-.+|...-.+... ..-++.-+..+..+++-+|. .-.++...-.++...
T Consensus 51 aLklt~elid~npe~ytiwnyr~~I~~h~~~~sedk~~~ldneld~~~~~lk~~PK--------~YqiW~HR~~~Le~~p 122 (328)
T COG5536 51 ALKLTQELIDKNPEFYTIWNYRFSILKHVQMVSEDKEHLLDNELDFLDEALKDNPK--------NYQIWHHRQWMLELFP 122 (328)
T ss_pred HHHHhHHHHhhCHHHHHHHhhHHHHHhhhhhhcccchhhhhcHHHHHHHHHhcCCc--------hhhhhHHHHHHHHhCC
Confidence 4444444455555544444443333322 12245556778888888888 455555555555443
Q ss_pred -CCHHHHHHHHHHHHHhCCCcHHHHHHHHHHH------HHCCCHHHHHHHHHHHHHhCCCCHHHHHHHH---HHHHhCCC
Q 006120 215 -GMVLSACEYYRESAILCPTHFRALKLLGSAL------FGVGEYRAAVKALEEAIFIKPDYADAHCDLA---SALHAMGE 284 (660)
Q Consensus 215 -g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~------~~~g~~~~A~~~~~~al~~~p~~~~~~~~la---~~~~~~g~ 284 (660)
.++..-+...++.+..++.+...|...-.++ ..-..+..-.++-..++..++-+..+|...- ......|+
T Consensus 123 ~~~~~rEl~itkklld~DsrNyH~W~YR~~vl~~ie~~~N~S~~k~e~eytt~~I~tdi~N~SaW~~r~~~~~~~~~~~~ 202 (328)
T COG5536 123 KPSWGRELFITKKLLDSDSRNYHVWSYRRWVLRTIEDLFNFSDLKHELEYTTSLIETDIYNNSAWHHRYIWIERRFNRGD 202 (328)
T ss_pred CcccchhHHHHHHHhcccccccceeeeEeeeeecchhhccchhHHHHHHhHHHHHhhCCCChHHHHHHHHHHHHHHhhcc
Confidence 5677778888899999998877665433333 3334445556677778888898888887762 22233444
Q ss_pred ------hHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHh--cCCCHHHHHHHHHHHHc
Q 006120 285 ------DERAIEVFQKAIDLKPGHVDALYNLGGLYMDL--GAGETEEAKKALKEALK 333 (660)
Q Consensus 285 ------~~~A~~~~~~al~~~p~~~~a~~~La~~~~~~--~~g~~~eA~~~~~~al~ 333 (660)
+++-+.+.-.++-.+|++..+|..+-.+...- ..-.+.+-++.+.+-+.
T Consensus 203 visqk~l~~eL~~i~~~if~~p~~~S~w~y~r~~~~~~~~d~~~~~e~v~~L~k~~~ 259 (328)
T COG5536 203 VISQKYLEKELEYIFDKIFTDPDNQSVWGYLRGVSSEFATDIVMIGEKVEDLGKYIV 259 (328)
T ss_pred cchHHHHHHHHHHHHhhhhcCccccchhhHHHHHhccchHHHHHHHHHHHHHHhhhe
Confidence 45556666677777899988887766554320 00134555555544433
No 477
>PF09205 DUF1955: Domain of unknown function (DUF1955); InterPro: IPR015288 Members of this family are found in hypothetical proteins synthesised by the Archaeal organism Sulfolobus. Their exact function has not, as yet, been determined. ; PDB: 1WY6_A.
Probab=45.35 E-value=1.4e+02 Score=26.54 Aligned_cols=56 Identities=18% Similarity=0.096 Sum_probs=39.6
Q ss_pred HHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHh
Q 006120 134 VLYEHQLFKEALVSFKRACELQPTDVRPHFRAGNCLYVLGRYREAKEEYLLALEAA 189 (660)
Q Consensus 134 ~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~ 189 (660)
+...+|+-++-.+.+....+....++..+..+|.+|.+.|+..+|.+.+.+|-+..
T Consensus 95 ~lv~~~kkDqLdki~~~l~kn~~~~p~~L~kia~Ay~klg~~r~~~ell~~ACekG 150 (161)
T PF09205_consen 95 ILVKQGKKDQLDKIYNELKKNEEINPEFLVKIANAYKKLGNTREANELLKEACEKG 150 (161)
T ss_dssp HHHHTT-HHHHHHHHHHH-----S-HHHHHHHHHHHHHTT-HHHHHHHHHHHHHTT
T ss_pred HHHHhccHHHHHHHHHHHhhccCCCHHHHHHHHHHHHHhcchhhHHHHHHHHHHhc
Confidence 34456777777777777766556679999999999999999999999999988754
No 478
>KOG1920 consensus IkappaB kinase complex, IKAP component [Transcription]
Probab=45.23 E-value=6.6e+02 Score=30.70 Aligned_cols=85 Identities=19% Similarity=0.157 Sum_probs=42.6
Q ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHH---HHHHHH
Q 006120 202 QIYVNLGIALEGEGMVLSACEYYRESAILCPTHFRALKLLGSALFGVGEYRAAVKALEEAIFIKPDYADAH---CDLASA 278 (660)
Q Consensus 202 ~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~---~~la~~ 278 (660)
.++...|..+...+.+++|.-.|+++=++. .--.+|...|+|.+|+....+ +.+...... ..|+.-
T Consensus 940 ~i~~~ya~hL~~~~~~~~Aal~Ye~~Gkle--------kAl~a~~~~~dWr~~l~~a~q---l~~~~de~~~~a~~L~s~ 1008 (1265)
T KOG1920|consen 940 VIYEAYADHLREELMSDEAALMYERCGKLE--------KALKAYKECGDWREALSLAAQ---LSEGKDELVILAEELVSR 1008 (1265)
T ss_pred HHHHHHHHHHHHhccccHHHHHHHHhccHH--------HHHHHHHHhccHHHHHHHHHh---hcCCHHHHHHHHHHHHHH
Confidence 444445555555555555555554431110 001233334444444443332 223333333 567777
Q ss_pred HHhCCChHHHHHHHHHHHH
Q 006120 279 LHAMGEDERAIEVFQKAID 297 (660)
Q Consensus 279 ~~~~g~~~~A~~~~~~al~ 297 (660)
+..++++-+|.......+.
T Consensus 1009 L~e~~kh~eAa~il~e~~s 1027 (1265)
T KOG1920|consen 1009 LVEQRKHYEAAKILLEYLS 1027 (1265)
T ss_pred HHHcccchhHHHHHHHHhc
Confidence 7788888888777766553
No 479
>cd02679 MIT_spastin MIT: domain contained within Microtubule Interacting and Trafficking molecules. This MIT domain sub-family is found in the AAA protein spastin, a probable ATPase involved in the assembly or function of nuclear protein complexes; spastins might also be involved in microtubule dynamics. The molecular function of the MIT domain is unclear.
Probab=44.83 E-value=42 Score=26.66 Aligned_cols=16 Identities=25% Similarity=0.090 Sum_probs=8.9
Q ss_pred CCCHHHHHHHHHHHHH
Q 006120 214 EGMVLSACEYYRESAI 229 (660)
Q Consensus 214 ~g~~~~A~~~~~~al~ 229 (660)
.|+.++|+.+|++++.
T Consensus 21 ~g~~e~Al~~Y~~gi~ 36 (79)
T cd02679 21 WGDKEQALAHYRKGLR 36 (79)
T ss_pred cCCHHHHHHHHHHHHH
Confidence 3555556555555544
No 480
>KOG4279 consensus Serine/threonine protein kinase [Signal transduction mechanisms]
Probab=44.75 E-value=1.6e+02 Score=33.67 Aligned_cols=180 Identities=14% Similarity=0.055 Sum_probs=97.1
Q ss_pred HhHHHHHHHHHHHHHHHHHHHHHHHHHhhccCcHHHHHH---HHHHHHHHH---HcCCHHHHHHHHHHHHHhC-CCCHHH
Q 006120 89 EKRVFWEESTHDYAVFVKELGVLRNRADGARSREEAFDG---HMAIGRVLY---EHQLFKEALVSFKRACELQ-PTDVRP 161 (660)
Q Consensus 89 ~~~~~l~~~~~~~g~~~~Al~~l~~a~~~~~~~~~~~~~---~~~lg~~~~---~~g~~~~A~~~~~~al~~~-p~~~~~ 161 (660)
+.-..+-..+.+..+|..-++..+. ++..|+.-..++. .+..+.++- .-|+-++|+...-.+++.. |-.++.
T Consensus 202 d~V~nlmlSyRDvQdY~amirLVe~-Lk~iP~t~~vve~~nv~f~YaFALNRRNr~GDRakAL~~~l~lve~eg~vapDm 280 (1226)
T KOG4279|consen 202 DTVSNLMLSYRDVQDYDAMIRLVED-LKRIPDTLKVVETHNVRFHYAFALNRRNRPGDRAKALNTVLPLVEKEGPVAPDM 280 (1226)
T ss_pred HHHHHHHhhhccccchHHHHHHHHH-HHhCcchhhhhccCceEEEeeehhcccCCCccHHHHHHHHHHHHHhcCCCCCce
Confidence 3344444456666677665555543 3344422222211 122223332 3478899999988888875 445566
Q ss_pred HHHHHHHHHH---------cCCHHHHHHHHHHHHHHhccCCCchhchHHHHHHHHHHHHHHCCC-HHHHHHHHHHHHHhC
Q 006120 162 HFRAGNCLYV---------LGRYREAKEEYLLALEAAETGGNQWAYLLPQIYVNLGIALEGEGM-VLSACEYYRESAILC 231 (660)
Q Consensus 162 ~~~la~~~~~---------~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~la~~~~~~g~-~~~A~~~~~~al~~~ 231 (660)
+..-|++|.. .+..+.|+++|+++.+..|.. ..=++++.++...|+ ++...+.-.-++.++
T Consensus 281 ~Cl~GRIYKDmF~~S~ytDa~s~~~a~~WyrkaFeveP~~---------~sGIN~atLL~aaG~~Fens~Elq~IgmkLn 351 (1226)
T KOG4279|consen 281 YCLCGRIYKDMFIASNYTDAESLNHAIEWYRKAFEVEPLE---------YSGINLATLLRAAGEHFENSLELQQIGMKLN 351 (1226)
T ss_pred eeeechhhhhhhhccCCcchhhHHHHHHHHHHHhccCchh---------hccccHHHHHHHhhhhccchHHHHHHHHHHH
Confidence 6666777643 456788999999999998863 333556666655554 333333322222221
Q ss_pred C-----C---cHHHHHHHHHH---HHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHH
Q 006120 232 P-----T---HFRALKLLGSA---LFGVGEYRAAVKALEEAIFIKPDYADAHCDLASA 278 (660)
Q Consensus 232 p-----~---~~~~~~~lg~~---~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~ 278 (660)
. . ...-|...|.. -...+++.+|++..+...++.|-.+..-..+..+
T Consensus 352 ~LlgrKG~leklq~YWdV~~y~~asVLAnd~~kaiqAae~mfKLk~P~WYLkS~meni 409 (1226)
T KOG4279|consen 352 SLLGRKGALEKLQEYWDVATYFEASVLANDYQKAIQAAEMMFKLKPPVWYLKSTMENI 409 (1226)
T ss_pred HHhhccchHHHHHHHHhHHHhhhhhhhccCHHHHHHHHHHHhccCCceehHHHHHHHH
Confidence 1 0 01112222221 1234677777777777777776554444444443
No 481
>PF08209 Sgf11: Sgf11 (transcriptional regulation protein); InterPro: IPR013246 The Sgf11 family is a SAGA complex subunit in Saccharomyces cerevisiae (Baker's yeast). The SAGA complex is a multisubunit protein complex involved in transcriptional regulation. SAGA combines proteins involved in interactions with DNA-bound activators and TATA-binding protein (TBP), as well as enzymes for histone acetylation and deubiquitylation [].; PDB: 3M99_B 2LO2_A 3MHH_C 3MHS_C.
Probab=44.56 E-value=9 Score=24.71 Aligned_cols=17 Identities=35% Similarity=0.718 Sum_probs=14.1
Q ss_pred Ccccccccccccccccc
Q 006120 590 RHVCSVCRYPIIGSRFK 606 (660)
Q Consensus 590 ~~~~~~~~~~~~~~~~~ 606 (660)
..+|..|.=+|.++||-
T Consensus 4 ~~~C~nC~R~v~a~RfA 20 (33)
T PF08209_consen 4 YVECPNCGRPVAASRFA 20 (33)
T ss_dssp EEE-TTTSSEEEGGGHH
T ss_pred eEECCCCcCCcchhhhH
Confidence 36899999999999995
No 482
>PF02591 DUF164: Putative zinc ribbon domain; InterPro: IPR003743 This entry describes proteins of unknown function.
Probab=43.79 E-value=7.2 Score=28.63 Aligned_cols=30 Identities=20% Similarity=0.567 Sum_probs=26.0
Q ss_pred Cccccccccccccccccccccc--cccccccc
Q 006120 590 RHVCSVCRYPIIGSRFKEMKSH--FSLCSQCY 619 (660)
Q Consensus 590 ~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~ 619 (660)
+.+|+.|+..|--..+.|++.. ...|..|-
T Consensus 22 ~~~C~gC~~~l~~~~~~~i~~~~~i~~Cp~Cg 53 (56)
T PF02591_consen 22 GGTCSGCHMELPPQELNEIRKGDEIVFCPNCG 53 (56)
T ss_pred CCccCCCCEEcCHHHHHHHHcCCCeEECcCCC
Confidence 4599999999999999999877 67888883
No 483
>cd02680 MIT_calpain7_2 MIT: domain contained within Microtubule Interacting and Trafficking molecules. This sub-family of MIT domains is found in the nuclear thiol protease PalBH. The molecular function of the MIT domain is unclear.
Probab=43.56 E-value=41 Score=26.40 Aligned_cols=16 Identities=25% Similarity=0.399 Sum_probs=9.1
Q ss_pred CCHHHHHHHHHHHHHh
Q 006120 249 GEYRAAVKALEEAIFI 264 (660)
Q Consensus 249 g~~~~A~~~~~~al~~ 264 (660)
|++++|+.+|..+++.
T Consensus 20 gny~eA~~lY~~ale~ 35 (75)
T cd02680 20 GNAEEAIELYTEAVEL 35 (75)
T ss_pred hhHHHHHHHHHHHHHH
Confidence 5555566555555543
No 484
>PF11846 DUF3366: Domain of unknown function (DUF3366); InterPro: IPR021797 This domain is functionally uncharacterised. This domain is found in bacteria. This presumed domain is about 200 amino acids in length.
Probab=43.14 E-value=84 Score=29.62 Aligned_cols=45 Identities=20% Similarity=0.101 Sum_probs=24.9
Q ss_pred HHHHHHHHHhCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCC
Q 006120 221 CEYYRESAILCPTHFRALKLLGSALFGVGEYRAAVKALEEAIFIKP 266 (660)
Q Consensus 221 ~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p 266 (660)
++..++.++..| ++..+.+++.++...|+.++|....+++..+.|
T Consensus 131 ~~~a~~~l~~~P-~~~~~~~~a~~l~~~G~~~eA~~~~~~~~~lyP 175 (193)
T PF11846_consen 131 IEWAERLLRRRP-DPNVYQRYALALALLGDPEEARQWLARARRLYP 175 (193)
T ss_pred HHHHHHHHHhCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC
Confidence 333444444444 355555556666666666666666666666665
No 485
>PF04348 LppC: LppC putative lipoprotein; InterPro: IPR007443 This entry includes several bacterial outer membrane antigens, whose molecular function is unknown.; PDB: 3CKM_A.
Probab=42.82 E-value=8.1 Score=43.11 Aligned_cols=157 Identities=14% Similarity=0.039 Sum_probs=0.0
Q ss_pred HHHHHHHHHHhCC-CCHHHHHHHHHHHHHcCCHHHHHHHHHHHH--HHhccCCCchhchHHHHHHHHHHHHHHCCCHHHH
Q 006120 144 ALVSFKRACELQP-TDVRPHFRAGNCLYVLGRYREAKEEYLLAL--EAAETGGNQWAYLLPQIYVNLGIALEGEGMVLSA 220 (660)
Q Consensus 144 A~~~~~~al~~~p-~~~~~~~~la~~~~~~g~~~~A~~~~~~al--~~~p~~~~~~~~~~~~~~~~la~~~~~~g~~~~A 220 (660)
|..++.++-...+ ........-+..+...|++..|...+.+.- .+.+.. ........+.+....|++++|
T Consensus 8 A~~yL~~A~~a~~~~~~~~~L~Aa~a~l~~g~~~~A~~ll~~l~~~~L~~~q-------~~~~~Ll~A~lal~~~~~~~A 80 (536)
T PF04348_consen 8 AEQYLQQAQQASGEQRAQLLLLAARALLQEGDWAQAQALLNQLDPQQLSPSQ-------QARYQLLRARLALAQGDPEQA 80 (536)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HHHHHHHHHhcCcHhHHHHHHHHHHHHHhCCCHHHHHHHHHhcccccCChHH-------HHHHHHHHHHHHHhcCCHHHH
Confidence 3334444444333 234556666889999999999999998766 233332 456667788899999999999
Q ss_pred HHHHHHH--HHhCCC-cHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCC-------CHHHHHHHHHHHHhCCChHHHHH
Q 006120 221 CEYYRES--AILCPT-HFRALKLLGSALFGVGEYRAAVKALEEAIFIKPD-------YADAHCDLASALHAMGEDERAIE 290 (660)
Q Consensus 221 ~~~~~~a--l~~~p~-~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~-------~~~~~~~la~~~~~~g~~~~A~~ 290 (660)
+..+... ..+.+. ....+...+.++...|++-+|...+-..-.+-++ ...+|..|..+ ...
T Consensus 81 l~~L~~~~~~~l~~~~~~~~~~l~A~a~~~~~~~l~Aa~~~i~l~~lL~d~~~~~~N~~~iW~~L~~l-------~~~-- 151 (536)
T PF04348_consen 81 LSLLNAQDLWQLPPEQQARYHQLRAQAYEQQGDPLAAARERIALDPLLPDPQERQENQDQIWQALSQL-------PPE-- 151 (536)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HHHhccCCcccCCHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHhhhcCChHHHHHHHHHHHHHHHcC-------CHH--
Confidence 9998741 112221 2445666788999999988888776555444332 12233333222 111
Q ss_pred HHHHHHHhCCCCHHHHHHHHHHHHHh
Q 006120 291 VFQKAIDLKPGHVDALYNLGGLYMDL 316 (660)
Q Consensus 291 ~~~~al~~~p~~~~a~~~La~~~~~~ 316 (660)
.++............|..|+.++...
T Consensus 152 ~L~~~~~~~~~~l~GWl~La~i~~~~ 177 (536)
T PF04348_consen 152 QLQQLRRASEPDLQGWLELALIYRQY 177 (536)
T ss_dssp --------------------------
T ss_pred HHHhhhcCCCHHHHHHHHHHHHHHhc
Confidence 12221222233346788888888763
No 486
>cd02680 MIT_calpain7_2 MIT: domain contained within Microtubule Interacting and Trafficking molecules. This sub-family of MIT domains is found in the nuclear thiol protease PalBH. The molecular function of the MIT domain is unclear.
Probab=42.58 E-value=50 Score=25.96 Aligned_cols=19 Identities=32% Similarity=0.415 Sum_probs=15.4
Q ss_pred HHCCCHHHHHHHHHHHHHh
Q 006120 212 EGEGMVLSACEYYRESAIL 230 (660)
Q Consensus 212 ~~~g~~~~A~~~~~~al~~ 230 (660)
-..|++++|+.+|..+++.
T Consensus 17 D~~gny~eA~~lY~~ale~ 35 (75)
T cd02680 17 DEKGNAEEAIELYTEAVEL 35 (75)
T ss_pred hHhhhHHHHHHHHHHHHHH
Confidence 3458999999999998875
No 487
>cd02682 MIT_AAA_Arch MIT: domain contained within Microtubule Interacting and Trafficking molecules. This sub-family of MIT domains is found in mostly archaebacterial AAA-ATPases. The molecular function of the MIT domain is unclear.
Probab=42.26 E-value=1.3e+02 Score=23.72 Aligned_cols=29 Identities=21% Similarity=0.245 Sum_probs=17.3
Q ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Q 006120 201 PQIYVNLGIALEGEGMVLSACEYYRESAI 229 (660)
Q Consensus 201 ~~~~~~la~~~~~~g~~~~A~~~~~~al~ 229 (660)
+..+...|.-+-..|++.+|+.+|+++++
T Consensus 6 A~~~a~~AVe~D~~gr~~eAi~~Y~~aIe 34 (75)
T cd02682 6 ARKYAINAVKAEKEGNAEDAITNYKKAIE 34 (75)
T ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Confidence 34444555555666777777776666543
No 488
>COG3107 LppC Putative lipoprotein [General function prediction only]
Probab=42.00 E-value=5.2e+02 Score=28.59 Aligned_cols=183 Identities=18% Similarity=0.096 Sum_probs=98.5
Q ss_pred HHHHHHHHHHHHHhhccCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHH-HhCCC-CHHHHHHHHHHHHHcCCHHHHHH
Q 006120 103 VFVKELGVLRNRADGARSREEAFDGHMAIGRVLYEHQLFKEALVSFKRAC-ELQPT-DVRPHFRAGNCLYVLGRYREAKE 180 (660)
Q Consensus 103 ~~~~Al~~l~~a~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al-~~~p~-~~~~~~~la~~~~~~g~~~~A~~ 180 (660)
......+.|......... ++.......-+.++.+.|+..+|...+.+.- ++.+. ..+.-...+.+.....++..|..
T Consensus 42 ~a~a~s~~yl~qa~qs~~-~~~~~~~llAa~al~~e~k~~qA~~Ll~ql~~~Ltd~Q~~~~~LL~ael~la~~q~~~Al~ 120 (604)
T COG3107 42 TANASSQFYLQQAQQSSG-EQQNDWLLLAARALVEEGKTAQAQALLNQLPQELTDAQRAEKSLLAAELALAQKQPAAALQ 120 (604)
T ss_pred CcchhHHHHHHHHhhcCc-hhhhhHHHHHHHHHHHcCChHHHHHHHHhccccCCHHHHHHHHHHHHHHHHhccChHHHHH
Confidence 333334444444433333 3344555667788899999999999998876 33332 23444566788888999999998
Q ss_pred HHHHHHHHhccCCCchhchHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCc---------HHHHHHHHHHHHHCCCH
Q 006120 181 EYLLALEAAETGGNQWAYLLPQIYVNLGIALEGEGMVLSACEYYRESAILCPTH---------FRALKLLGSALFGVGEY 251 (660)
Q Consensus 181 ~~~~al~~~p~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~---------~~~~~~lg~~~~~~g~~ 251 (660)
.+.+...-.-.. .. ....|...+.+....|+.-+|.+ .-+..+|-. ...|..++ +
T Consensus 121 ~L~~~~~~~ls~---~Q--q~Ry~q~~a~a~ea~~~~~~a~r---ari~~~~lL~~k~~q~nid~tW~ll~-------~- 184 (604)
T COG3107 121 QLAKLLPADLSQ---NQ--QARYYQARADALEARGDSIDAAR---ARIAQDPLLSGKAKQANIDKTWQLLS-------E- 184 (604)
T ss_pred HHhhcchhhcCH---HH--HHHHHHHHHHHHhcccchHHHHH---HHHHhhhhccchhHHHhHHHHHHHhh-------h-
Confidence 887755322111 00 34555566666666655444433 223332211 11222222 0
Q ss_pred HHHHHHHHHHHH--hCCC--CHHHHHHHHHHHHhCCChH-HHHHHHHHHHHhCCCCHHHH
Q 006120 252 RAAVKALEEAIF--IKPD--YADAHCDLASALHAMGEDE-RAIEVFQKAIDLKPGHVDAL 306 (660)
Q Consensus 252 ~~A~~~~~~al~--~~p~--~~~~~~~la~~~~~~g~~~-~A~~~~~~al~~~p~~~~a~ 306 (660)
..=...|. -+++ ....|..++++|...+... .=..-.++-...+|.++.+.
T Consensus 185 ----~~~~~VIn~sa~e~~~~L~GWL~L~rv~~~~~~~p~qlk~~i~~Wq~~yPqhPaA~ 240 (604)
T COG3107 185 ----QANTGVINNSADEGNAALQGWLDLARVYKDNGSDPPQLKAGIEDWQKRYPQHPAAK 240 (604)
T ss_pred ----hccccceecccCCcccccchHHHHHHHHHhcccCHHHHHHHHHHHHhcCCCCchhh
Confidence 00001122 1233 3567899999998777543 33344444455567765543
No 489
>PF12149 HSV_VP16_C: Herpes simplex virus virion protein 16 C terminal; InterPro: IPR021051 This domain is about 30 amino acids in length. It is found in association with PF02232 from PFAM. This domain is found in the C-terminal region of the HSV virion protein 16 (alpha-TIF). This protein is a transcription promoter. The C-terminal domain is the carboxyl subdomain of the acidic transcriptional activation domain. The protein binds to DNA binding proteins to carry out its function. Such proteins include TATA binding protein, CBP, TBP-binding protein, etc. Alpha-TIF (VP16) from Herpes Simplex virus is an essential tegument protein involved in the transcriptional activation of viral immediate early (IE) promoters (alpha genes) during the lytic phase of viral infection. VP16 associates with cellular transcription factors to enhance transcription rates, including the general transcription factor TFIIB and the transcriptional coactivator PC4. The N-terminal residues of VP16 confer specificity for the IE genes, while the C-terminal residues are responsible for transcriptional activation. Within the C-terminal region are two activation regions that can independently and cooperatively activate transcription []. VP16 forms a transcriptional regulatory complex with two cellular proteins, the POU-domain transcription factor Oct-1 and the cell-proliferation factor HCF-1 []. VP16 is an alpha/beta protein with an unusual fold. Other transcription factors may have a similar topology.; PDB: 2K2U_B 2PHG_B 2PHE_C.
Probab=41.78 E-value=9.3 Score=22.96 Aligned_cols=9 Identities=56% Similarity=0.837 Sum_probs=7.8
Q ss_pred HHhhhccCC
Q 006120 559 EFLVMFDDP 567 (660)
Q Consensus 559 ~~~~~~~~~ 567 (660)
||.+||+|-
T Consensus 14 efeqmftda 22 (30)
T PF12149_consen 14 EFEQMFTDA 22 (30)
T ss_dssp CHHCCCCCC
T ss_pred HHHHHHhhh
Confidence 899999983
No 490
>COG5187 RPN7 26S proteasome regulatory complex component, contains PCI domain [Posttranslational modification, protein turnover, chaperones]
Probab=41.78 E-value=3.9e+02 Score=27.07 Aligned_cols=120 Identities=13% Similarity=-0.004 Sum_probs=61.2
Q ss_pred HHHHHHHHHHHhhcc---CcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC---CHHHH---HHHHHHHHHcCCH
Q 006120 105 VKELGVLRNRADGAR---SREEAFDGHMAIGRVLYEHQLFKEALVSFKRACELQPT---DVRPH---FRAGNCLYVLGRY 175 (660)
Q Consensus 105 ~~Al~~l~~a~~~~~---~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~---~~~~~---~~la~~~~~~g~~ 175 (660)
++-++.+.+.++..+ ...+..+++.++|..|.+.++.+.+.+.+.+.++.+-. ..+++ ..+|.+|..+.-.
T Consensus 92 eeki~Elde~i~~~eedngE~e~~ea~~n~aeyY~qi~D~~ng~~~~~~~~~~a~stg~KiDv~l~kiRlg~~y~d~~vV 171 (412)
T COG5187 92 EEKIEELDERIREKEEDNGETEGSEADRNIAEYYCQIMDIQNGFEWMRRLMRDAMSTGLKIDVFLCKIRLGLIYGDRKVV 171 (412)
T ss_pred HHHHHHHHHHHHHHhhcccchHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHhcccchhhHHHHHHHHHhhccHHHH
Confidence 334444444443322 23445677888888888888888888887777664321 12333 3445555444444
Q ss_pred HHHHHHHHHHHHHhccCCCchhchHHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Q 006120 176 REAKEEYLLALEAAETGGNQWAYLLPQIYVNLGIALEGEGMVLSACEYYRESAI 229 (660)
Q Consensus 176 ~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~ 229 (660)
++.++.....++.. ++... .-..-...|...+...++.+|-..+...+.
T Consensus 172 ~e~lE~~~~~iEkG---gDWeR--rNRyK~Y~Gi~~m~~RnFkeAa~Ll~d~l~ 220 (412)
T COG5187 172 EESLEVADDIIEKG---GDWER--RNRYKVYKGIFKMMRRNFKEAAILLSDILP 220 (412)
T ss_pred HHHHHHHHHHHHhC---CCHHh--hhhHHHHHHHHHHHHHhhHHHHHHHHHHhc
Confidence 44444444444332 22111 112222334444555566666666655544
No 491
>KOG4322 consensus Anaphase-promoting complex (APC), subunit 5 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=41.61 E-value=4.7e+02 Score=28.03 Aligned_cols=178 Identities=12% Similarity=-0.009 Sum_probs=117.0
Q ss_pred HHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC--CCC----HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhccCCCc
Q 006120 122 EEAFDGHMAIGRVLYEHQLFKEALVSFKRACELQ--PTD----VRPHFRAGNCLYVLGRYREAKEEYLLALEAAETGGNQ 195 (660)
Q Consensus 122 ~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~--p~~----~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~ 195 (660)
....+..+..+.++...+++..|...+.++.-.. +.+ ..+...++.++.+.+..-.+..+.-.++.........
T Consensus 270 ~~svE~l~R~A~il~A~~q~s~A~~ll~kL~vqc~k~~~~em~~sVLL~~ae~~~~g~~a~l~lplaL~~~~~~sey~ld 349 (482)
T KOG4322|consen 270 QQSVENLCRFAHILHADEQVSYAYALLNKLMVQCDKGCNEEMLHSVLLTIAEARESGDTACLNLPLALMFEFKRSEYSLD 349 (482)
T ss_pred HhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccchhHHHHHHHHHHHHHHHhcCCCchhhHHHHHHHHHHHHHhccc
Confidence 4446778889999999999999999999887654 222 3566677777777777777777777776665443332
Q ss_pred hhchHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCc------HHHH-----HHHHHHH-HHCCCHHHHHHHHHHHHH
Q 006120 196 WAYLLPQIYVNLGIALEGEGMVLSACEYYRESAILCPTH------FRAL-----KLLGSAL-FGVGEYRAAVKALEEAIF 263 (660)
Q Consensus 196 ~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~------~~~~-----~~lg~~~-~~~g~~~~A~~~~~~al~ 263 (660)
.. .+..-..++..+..+|...+|+..+..++..---+ +.++ ..++... ....+.+.+..++++|-.
T Consensus 350 yl--~a~~~L~LAl~~L~LG~pk~Al~lLh~a~h~Il~~GgL~drara~fvfanC~lA~a~s~~~e~ld~~~~~L~~A~~ 427 (482)
T KOG4322|consen 350 YL--EANENLDLALEHLALGSPKAALPLLHTAVHLILVQGGLDDRARAIFVFANCTLAFALSCANESLDGFPRYLDLAQS 427 (482)
T ss_pred hh--hhhchHHHHHHHHHcCChHHHHHHHHhhhhHHHhccchhhcceeEEEEEeeeecchhhhhhhhHHhhHHHHHHHHH
Confidence 22 55667788888899999999999999987642111 1111 1111111 133455666666666544
Q ss_pred hC------CCCHHHHHHHHHHHHhCCChH---HHHHHHHHHHHhCCC
Q 006120 264 IK------PDYADAHCDLASALHAMGEDE---RAIEVFQKAIDLKPG 301 (660)
Q Consensus 264 ~~------p~~~~~~~~la~~~~~~g~~~---~A~~~~~~al~~~p~ 301 (660)
.. ..-.++.+.++..|-..|+.+ ++...|++++..-|.
T Consensus 428 ~f~kL~~he~ildv~yf~A~~yn~lGd~~eRn~~AslFrk~~~~le~ 474 (482)
T KOG4322|consen 428 IFYKLGCHEKILDVTYFSAYQYNHLGDSPERNLLASLFRKAWRYLEL 474 (482)
T ss_pred HHHHccchHHHHHHHHHHHHHHHhhcCchHHHHHHHHHHHHHHhcCC
Confidence 32 123567788889998888874 455667777665443
No 492
>TIGR00756 PPR pentatricopeptide repeat domain (PPR motif). This family has a similar consensus to the TPR domain (tetratricopeptide), pfam pfam00515, a 33-residue repeat. It is predicted to form a pair of antiparallel helices similar to that of TPR.
Probab=41.34 E-value=51 Score=20.28 Aligned_cols=26 Identities=27% Similarity=0.450 Sum_probs=13.4
Q ss_pred HHHHHHHHHhCCChHHHHHHHHHHHH
Q 006120 272 HCDLASALHAMGEDERAIEVFQKAID 297 (660)
Q Consensus 272 ~~~la~~~~~~g~~~~A~~~~~~al~ 297 (660)
|..+-..|.+.|++++|...|++..+
T Consensus 3 ~n~li~~~~~~~~~~~a~~~~~~M~~ 28 (35)
T TIGR00756 3 YNTLIDGLCKAGRVEEALELFKEMLE 28 (35)
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 34444455555555555555555443
No 493
>smart00299 CLH Clathrin heavy chain repeat homology.
Probab=41.12 E-value=2.5e+02 Score=24.58 Aligned_cols=120 Identities=18% Similarity=0.137 Sum_probs=59.8
Q ss_pred HHHHcCCHHHHHHHHHHHHHHhccCCCchhchHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHH
Q 006120 168 CLYVLGRYREAKEEYLLALEAAETGGNQWAYLLPQIYVNLGIALEGEGMVLSACEYYRESAILCPTHFRALKLLGSALFG 247 (660)
Q Consensus 168 ~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~ 247 (660)
.+...+.+.....+++.++..++. .+..+..+..+|... +..+.+.+++. .++.. -.-..+.++.+
T Consensus 16 ~~~~~~~~~~l~~yLe~~~~~~~~--------~~~~~~~li~ly~~~-~~~~ll~~l~~----~~~~y-d~~~~~~~c~~ 81 (140)
T smart00299 16 LFEKRNLLEELIPYLESALKLNSE--------NPALQTKLIELYAKY-DPQKEIERLDN----KSNHY-DIEKVGKLCEK 81 (140)
T ss_pred HHHhCCcHHHHHHHHHHHHccCcc--------chhHHHHHHHHHHHH-CHHHHHHHHHh----ccccC-CHHHHHHHHHH
Confidence 344556777778888877766543 445566666666543 34455555552 11111 11123344444
Q ss_pred CCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHH-hCCChHHHHHHHHHHHHhCCCCHHHHHHHHHHHH
Q 006120 248 VGEYRAAVKALEEAIFIKPDYADAHCDLASALH-AMGEDERAIEVFQKAIDLKPGHVDALYNLGGLYM 314 (660)
Q Consensus 248 ~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~-~~g~~~~A~~~~~~al~~~p~~~~a~~~La~~~~ 314 (660)
.+-+++++..+.+. .....+ -.++. ..++++.|++++.+ +.+++.|..++..+.
T Consensus 82 ~~l~~~~~~l~~k~----~~~~~A----l~~~l~~~~d~~~a~~~~~~-----~~~~~lw~~~~~~~l 136 (140)
T smart00299 82 AKLYEEAVELYKKD----GNFKDA----IVTLIEHLGNYEKAIEYFVK-----QNNPELWAEVLKALL 136 (140)
T ss_pred cCcHHHHHHHHHhh----cCHHHH----HHHHHHcccCHHHHHHHHHh-----CCCHHHHHHHHHHHH
Confidence 55555555555442 111111 11222 22666666666654 345666666665554
No 494
>cd02679 MIT_spastin MIT: domain contained within Microtubule Interacting and Trafficking molecules. This MIT domain sub-family is found in the AAA protein spastin, a probable ATPase involved in the assembly or function of nuclear protein complexes; spastins might also be involved in microtubule dynamics. The molecular function of the MIT domain is unclear.
Probab=40.93 E-value=42 Score=26.67 Aligned_cols=16 Identities=25% Similarity=0.478 Sum_probs=9.6
Q ss_pred CCHHHHHHHHHHHHcc
Q 006120 319 GETEEAKKALKEALKM 334 (660)
Q Consensus 319 g~~~eA~~~~~~al~l 334 (660)
|+.++|+.+|++++..
T Consensus 22 g~~e~Al~~Y~~gi~~ 37 (79)
T cd02679 22 GDKEQALAHYRKGLRE 37 (79)
T ss_pred CCHHHHHHHHHHHHHH
Confidence 5666666666666543
No 495
>cd00350 rubredoxin_like Rubredoxin_like; nonheme iron binding domain containing a [Fe(SCys)4] center. The family includes rubredoxins, a small electron transfer protein, and a slightly smaller modular rubredoxin domain present in rubrerythrin and nigerythrin and detected either N- or C-terminal to such proteins as flavin reductase, NAD(P)H-nitrite reductase, and ferredoxin-thioredoxin reductase. In rubredoxin, the iron atom is coordinated by four cysteine residues (Fe(S-Cys)4), but iron can also be replaced by cobalt, nickel or zinc and believed to be involved in electron transfer. Rubrerythrins and nigerythrins are small homodimeric proteins, generally consisting of 2 domains: a rubredoxin domain C-terminal to a non-sulfur, oxo-bridged diiron site in the N-terminal rubrerythrin domain. Rubrerythrins and nigerythrins have putative peroxide activity.
Probab=40.15 E-value=13 Score=23.90 Aligned_cols=24 Identities=33% Similarity=0.664 Sum_probs=18.7
Q ss_pred cccccccccccccccccccccccccccccc
Q 006120 591 HVCSVCRYPIIGSRFKEMKSHFSLCSQCYS 620 (660)
Q Consensus 591 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 620 (660)
..|.+|+|...|.. ..-.|..|-+
T Consensus 2 ~~C~~CGy~y~~~~------~~~~CP~Cg~ 25 (33)
T cd00350 2 YVCPVCGYIYDGEE------APWVCPVCGA 25 (33)
T ss_pred EECCCCCCEECCCc------CCCcCcCCCC
Confidence 47999999988865 4558999954
No 496
>PF08626 TRAPPC9-Trs120: Transport protein Trs120 or TRAPPC9, TRAPP II complex subunit; InterPro: IPR013935 The trafficking protein particle complex TRAPP is a multi-protein complex needed in the early stages of the secretory pathway. To date, two kinds of TRAPP complexes have been studied, TRAPPI and TRAPP II. These complexes differ in subunit composition []. TRAPP I binds vesicles derived from the endoplasmic reticulum bringing them closer to the acceptor membrane. Trs120 is a subunit specific to the TRAPP II complex [] along with Trs65p and Trs130p(TRAPPC10). It is suggested that Trs120p is required for the stability of the Trs130p subunit, suggesting that these two proteins might interact in some way []. It is likely that there is a complex function for TRAPP II in multiple pathways [].
Probab=39.62 E-value=4.6e+02 Score=32.67 Aligned_cols=90 Identities=16% Similarity=0.049 Sum_probs=65.6
Q ss_pred CHHHHHHHHHHHHHHhccCCCchhchHHHHHHHHHHHHHHCC--------------------CHHHHHHHHHHHHHhCCC
Q 006120 174 RYREAKEEYLLALEAAETGGNQWAYLLPQIYVNLGIALEGEG--------------------MVLSACEYYRESAILCPT 233 (660)
Q Consensus 174 ~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~la~~~~~~g--------------------~~~~A~~~~~~al~~~p~ 233 (660)
.+++|+.+|.++.....+...... ..++...++.++.... .-.++...+.+++.....
T Consensus 360 ~~~~~l~~Y~~~~~~~~~~~p~lv--~~E~~lr~~~~l~~~~~~~~l~~iV~~~~~~~~~~~~~~eI~~~l~~~~~~~l~ 437 (1185)
T PF08626_consen 360 LYEKALSLYSRSTNDTSEYVPQLV--YSEACLRFARFLVAQHLSDNLDHIVKRPLTPTPNISSRSEIAEFLFKAFPLQLK 437 (1185)
T ss_pred HHHHHHHHHHHhhccccccCcchH--HHHHHHHHHHHHHHhhcccchhhhhccccccccCCCCHHHHHHHHHHhhhhhhh
Confidence 468888888888754333322222 6778888888888877 778888888888765432
Q ss_pred ------cHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC
Q 006120 234 ------HFRALKLLGSALFGVGEYRAAVKALEEAIFIK 265 (660)
Q Consensus 234 ------~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~ 265 (660)
....+..+|.+|...|-..++.-+++.++..-
T Consensus 438 ~l~~~dqi~i~~~lA~vy~~lG~~RK~AFvlR~l~~~~ 475 (1185)
T PF08626_consen 438 DLSVEDQIRIYSGLASVYGSLGFHRKKAFVLRELAVQL 475 (1185)
T ss_pred hCCHHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHh
Confidence 25678889999999998888888877776553
No 497
>TIGR00270 conserved hypothetical protein TIGR00270.
Probab=39.27 E-value=15 Score=33.51 Aligned_cols=33 Identities=33% Similarity=0.683 Sum_probs=26.1
Q ss_pred ccccccccccccccc--ccccccccccccccCCCC
Q 006120 592 VCSVCRYPIIGSRFK--EMKSHFSLCSQCYSEGKV 624 (660)
Q Consensus 592 ~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~ 624 (660)
.|-.|+=+|.|+=++ ==.+.-++|..|+.=||+
T Consensus 2 ~CEiCG~~i~~~~~~v~iega~l~vC~~C~k~G~~ 36 (154)
T TIGR00270 2 NCEICGRKIKGKGFKIVIEGSEMTVCGECRKFGKE 36 (154)
T ss_pred ccccCCCccCCCCeEEEEcCeEEehhhhHHhcCCc
Confidence 399999999998443 224678899999988994
No 498
>PRK12798 chemotaxis protein; Reviewed
Probab=39.16 E-value=5.1e+02 Score=27.71 Aligned_cols=195 Identities=15% Similarity=0.013 Sum_probs=123.9
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHH-HHHHHHcCCHHHHHHHHHHHHHHhccCCCchhchHHH-
Q 006120 126 DGHMAIGRVLYEHQLFKEALVSFKRACELQ-PTDVRPHFRA-GNCLYVLGRYREAKEEYLLALEAAETGGNQWAYLLPQ- 202 (660)
Q Consensus 126 ~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l-a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~- 202 (660)
+.-...|...+-.|+-.+|.+.+....... |...-.+..| .-......+..+|+..|+.+--..|..- .-+
T Consensus 113 d~~L~~g~laY~~Gr~~~a~~~La~i~~~~l~~~lg~~laLv~a~l~~~~dP~~Al~~lD~aRLlaPGTL------vEEA 186 (421)
T PRK12798 113 DQRLADGALAYLSGRGREARKLLAGVAPEYLPAELGAYLALVQGNLMVATDPATALKLLDQARLLAPGTL------VEEA 186 (421)
T ss_pred hHHHHHHHHHHHcCCHHHHHHHhhcCChhhcCchhhhHHHHHHHHHhcccCHHHHHHHHHHHHHhCCchH------HHHH
Confidence 445566777788899999998887654332 2233334433 3445667899999999999999888742 223
Q ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCcH---HHHHHHHHHHHHCCCHHHHHHHHHHHHHh-CCCC-HHHHHHHHH
Q 006120 203 IYVNLGIALEGEGMVLSACEYYRESAILCPTHF---RALKLLGSALFGVGEYRAAVKALEEAIFI-KPDY-ADAHCDLAS 277 (660)
Q Consensus 203 ~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~---~~~~~lg~~~~~~g~~~~A~~~~~~al~~-~p~~-~~~~~~la~ 277 (660)
++-.--.+..+.|+.+++..+-.+-+.....++ +.+-.+...+....+-. -...+...+.. +|.. ..+|..++.
T Consensus 187 ALRRsi~la~~~g~~~rf~~la~~Y~rRF~~S~YA~~F~~~F~~~~~~~~d~~-~~~~l~~~ls~~d~~~q~~lYL~iAR 265 (421)
T PRK12798 187 ALRRSLFIAAQLGDADKFEALARNYLRRFRHSPYASQFAQRFVDLVVRLDDEI-RDARLVEILSFMDPERQRELYLRIAR 265 (421)
T ss_pred HHHHhhHHHHhcCcHHHHHHHHHHHHHHhccCchHHHHHHHHHHHHHhccccc-cHHHHHHHHHhcCchhHHHHHHHHHH
Confidence 333334455789999999988888877655543 33444444444444222 22335555554 4433 678889999
Q ss_pred HHHhCCChHHHHHHHHHHHHhCCCC----HHHHHHHHHHHHHhcCCCHHHHHHHHH
Q 006120 278 ALHAMGEDERAIEVFQKAIDLKPGH----VDALYNLGGLYMDLGAGETEEAKKALK 329 (660)
Q Consensus 278 ~~~~~g~~~~A~~~~~~al~~~p~~----~~a~~~La~~~~~~~~g~~~eA~~~~~ 329 (660)
.-...|+.+-|.-.-++++.+.... ..+...-+....-. .+.++|.+.+.
T Consensus 266 ~Ali~Gk~~lA~~As~~A~~L~~~~~~~~~ra~LY~aaa~v~s--~~~~~al~~L~ 319 (421)
T PRK12798 266 AALIDGKTELARFASERALKLADPDSADAARARLYRGAALVAS--DDAESALEELS 319 (421)
T ss_pred HHHHcCcHHHHHHHHHHHHHhccCCCcchHHHHHHHHHHccCc--ccHHHHHHHHh
Confidence 9999999999999999999986321 22333333333322 45555555544
No 499
>COG3357 Predicted transcriptional regulator containing an HTH domain fused to a Zn-ribbon [Transcription]
Probab=38.60 E-value=17 Score=29.14 Aligned_cols=40 Identities=23% Similarity=0.463 Sum_probs=30.6
Q ss_pred CCccccccccccccccccccccccccccccccCCCCCCCCcccc
Q 006120 589 GRHVCSVCRYPIIGSRFKEMKSHFSLCSQCYSEGKVPPTFKQDE 632 (660)
Q Consensus 589 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 632 (660)
.-..|-.|+|...--+ + ..-|-|..|-||---||.|..|+
T Consensus 57 ~Pa~CkkCGfef~~~~---i-k~pSRCP~CKSE~Ie~prF~ie~ 96 (97)
T COG3357 57 RPARCKKCGFEFRDDK---I-KKPSRCPKCKSEWIEEPRFVIES 96 (97)
T ss_pred cChhhcccCccccccc---c-CCcccCCcchhhcccCCceeecc
Confidence 3678999999854311 2 24789999999999999998764
No 500
>cd05026 S-100Z S-100Z: S-100Z domain found in proteins similar to S100Z. S100Z is a member of the S100 domain family within the EF-hand Ca2+-binding proteins superfamily. Note that the S-100 hierarchy, to which this S-100Z group belongs, contains only S-100 EF-hand domains, other EF-hands have been modeled separately.S100 proteins exhibit unique patterns of tissue- and cell type-specific expression and have been implicated in the Ca2+-dependent regulation of diverse physiological processes, including cell cycle regulation, differentiation, growth, and metabolic control. S100Z is normally expressed in various tissues, with its highest level of expression being in spleen and leukocytes. The function of S100Z remains unclear. Preliminary structural data suggests that S100Z is homodimer, however a heterodimer with S100P has been reported. S100Z is capable of binding calcium ions. When calcium binds to S110Z, the protein experiences a conformational change, which exposes hydrophobic surfac
Probab=38.35 E-value=75 Score=25.99 Aligned_cols=72 Identities=13% Similarity=0.119 Sum_probs=39.8
Q ss_pred CHHHHHHhhhhhhcccc-cCCCCccchhccHHHHHHH-hHHHhccCC---CchhhhhhhccCCCcccchhHHhhhcc
Q 006120 494 SPEKRKRVAFDALLWRP-VNEGSTQVRKVDAVRYIKL-LRAVYIPSH---GVSEMMEVHGEADSSMVSLSEFLVMFD 565 (660)
Q Consensus 494 ~~~~r~r~~~d~~~~~~-~~~~~a~~i~~D~~~~l~d-L~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~ 565 (660)
.+.+.+....+.|+.-+ .++....|-..+...++.. +...+.... .+.+++.--..++...|+|.||+.|+.
T Consensus 4 ~le~a~~~~~~~F~~~dd~dgdg~~Is~~EL~~ll~~~~~~~~~~~~~~~~v~~i~~elD~n~dG~Idf~EF~~l~~ 80 (93)
T cd05026 4 QLEGAMDTLIRIFHNYSGKEGDRYKLSKGELKELLQRELTDFLSSQKDPMLVDKIMNDLDSNKDNEVDFNEFVVLVA 80 (93)
T ss_pred HHHHHHHHHHHHHHHHHccCCCCCEECHHHHHHHHHHHhHHhcccccCHHHHHHHHHHhCCCCCCCCCHHHHHHHHH
Confidence 45555555544444333 2232234666666666766 333333332 355555554556667899999998754
Done!