Query 006120
Match_columns 660
No_of_seqs 847 out of 4215
Neff 9.2
Searched_HMMs 29240
Date Mon Mar 25 16:29:12 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/006120.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/006120hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 4gyw_A UDP-N-acetylglucosamine 100.0 3.5E-39 1.2E-43 367.2 20.6 352 154-576 4-363 (723)
2 1w3b_A UDP-N-acetylglucosamine 100.0 7.3E-28 2.5E-32 256.1 33.7 297 20-337 60-371 (388)
3 1w3b_A UDP-N-acetylglucosamine 100.0 6.8E-28 2.3E-32 256.4 31.1 279 19-337 25-303 (388)
4 3ieg_A DNAJ homolog subfamily 100.0 5.4E-25 1.9E-29 229.6 38.7 295 21-352 31-354 (359)
5 3hym_B Cell division cycle pro 99.9 7.2E-26 2.5E-30 233.8 29.6 281 18-338 13-303 (330)
6 2y4t_A DNAJ homolog subfamily 99.9 4.4E-25 1.5E-29 238.9 36.3 319 17-353 16-378 (450)
7 3ieg_A DNAJ homolog subfamily 99.9 5.9E-25 2E-29 229.3 31.7 304 26-396 2-337 (359)
8 4eqf_A PEX5-related protein; a 99.9 6.2E-25 2.1E-29 231.3 28.6 245 88-337 65-313 (365)
9 2pl2_A Hypothetical conserved 99.9 3.1E-25 1.1E-29 216.4 22.6 197 125-332 5-212 (217)
10 2h6f_A Protein farnesyltransfe 99.9 1.6E-24 5.6E-29 229.1 26.9 244 81-338 90-352 (382)
11 2xpi_A Anaphase-promoting comp 99.9 1.1E-23 3.8E-28 236.7 33.8 275 24-338 302-583 (597)
12 1fch_A Peroxisomal targeting s 99.9 1.8E-24 6.2E-29 227.4 25.4 244 89-338 65-318 (368)
13 4eqf_A PEX5-related protein; a 99.9 1E-24 3.6E-29 229.5 22.8 272 25-334 63-356 (365)
14 1fch_A Peroxisomal targeting s 99.9 2.6E-24 8.8E-29 226.2 24.6 270 26-334 63-359 (368)
15 3cv0_A Peroxisome targeting si 99.9 2E-24 6.7E-29 222.7 22.9 273 25-337 19-318 (327)
16 2xpi_A Anaphase-promoting comp 99.9 1E-23 3.5E-28 237.0 30.4 289 24-334 197-504 (597)
17 3fp2_A TPR repeat-containing p 99.9 2.1E-23 7.2E-28 230.9 31.5 232 95-340 250-497 (537)
18 3hym_B Cell division cycle pro 99.9 6.7E-24 2.3E-28 218.9 24.6 236 89-337 23-268 (330)
19 2gw1_A Mitochondrial precursor 99.9 1.3E-23 4.4E-28 231.0 27.4 241 85-339 234-483 (514)
20 2y4t_A DNAJ homolog subfamily 99.9 2E-23 6.8E-28 225.9 28.2 254 80-338 18-290 (450)
21 3fp2_A TPR repeat-containing p 99.9 1.3E-23 4.4E-28 232.7 26.5 187 140-337 217-410 (537)
22 2gw1_A Mitochondrial precursor 99.9 1.2E-23 4E-28 231.4 25.5 240 88-338 186-448 (514)
23 4g1t_A Interferon-induced prot 99.9 3.2E-23 1.1E-27 226.0 28.0 341 22-395 89-460 (472)
24 4g1t_A Interferon-induced prot 99.9 7.8E-23 2.7E-27 222.9 31.0 290 23-340 47-369 (472)
25 3uq3_A Heat shock protein STI1 99.9 1.1E-22 3.8E-27 201.9 28.2 227 87-335 4-237 (258)
26 3cv0_A Peroxisome targeting si 99.9 9.8E-23 3.4E-27 209.9 27.0 245 88-337 21-272 (327)
27 2h6f_A Protein farnesyltransfe 99.9 2.1E-23 7.1E-28 220.7 21.7 258 20-316 90-366 (382)
28 3u4t_A TPR repeat-containing p 99.9 6.1E-23 2.1E-27 206.2 22.2 236 90-339 5-255 (272)
29 2pl2_A Hypothetical conserved 99.9 7.1E-23 2.4E-27 199.6 22.0 197 88-296 5-212 (217)
30 3mkr_A Coatomer subunit epsilo 99.9 1.9E-21 6.4E-26 198.6 30.0 234 88-342 34-272 (291)
31 3vtx_A MAMA; tetratricopeptide 99.9 4.3E-22 1.5E-26 188.0 23.5 171 125-303 5-175 (184)
32 3uq3_A Heat shock protein STI1 99.9 8.3E-22 2.8E-26 195.6 26.0 244 25-312 3-256 (258)
33 2ho1_A Type 4 fimbrial biogene 99.9 2.4E-21 8.1E-26 192.3 28.8 211 120-340 32-244 (252)
34 2q7f_A YRRB protein; TPR, prot 99.9 4.1E-22 1.4E-26 196.2 22.8 206 124-339 22-227 (243)
35 4a1s_A PINS, partner of inscut 99.9 2.6E-22 9E-27 214.5 22.7 289 24-339 45-377 (411)
36 3u4t_A TPR repeat-containing p 99.9 2.2E-22 7.5E-27 202.1 20.0 254 28-316 4-268 (272)
37 3vtx_A MAMA; tetratricopeptide 99.9 1.3E-21 4.5E-26 184.7 24.0 172 157-338 3-174 (184)
38 3sf4_A G-protein-signaling mod 99.9 8.9E-22 3.1E-26 209.2 25.5 286 25-337 7-339 (406)
39 2vq2_A PILW, putative fimbrial 99.9 7E-21 2.4E-25 184.6 29.4 209 121-339 4-216 (225)
40 2q7f_A YRRB protein; TPR, prot 99.9 1.7E-21 5.9E-26 191.7 23.9 220 86-316 21-240 (243)
41 4abn_A Tetratricopeptide repea 99.9 9.5E-22 3.2E-26 215.0 24.0 218 100-331 80-318 (474)
42 2vsy_A XCC0866; transferase, g 99.9 7.3E-22 2.5E-26 221.2 20.2 276 139-528 3-287 (568)
43 3ro2_A PINS homolog, G-protein 99.9 1.4E-21 4.7E-26 201.2 20.3 283 28-337 6-335 (338)
44 1xnf_A Lipoprotein NLPI; TPR, 99.9 3.1E-20 1.1E-24 186.4 27.7 228 99-338 16-248 (275)
45 2ho1_A Type 4 fimbrial biogene 99.9 6.4E-20 2.2E-24 181.9 28.6 216 83-309 31-249 (252)
46 3sf4_A G-protein-signaling mod 99.9 5.3E-21 1.8E-25 203.2 21.9 282 89-394 10-336 (406)
47 4a1s_A PINS, partner of inscut 99.9 7E-21 2.4E-25 203.4 22.6 286 85-394 45-372 (411)
48 1ouv_A Conserved hypothetical 99.9 8.8E-20 3E-24 183.8 29.1 225 88-337 6-254 (273)
49 4gyw_A UDP-N-acetylglucosamine 99.9 5.3E-21 1.8E-25 217.7 22.4 174 120-301 4-177 (723)
50 3ro2_A PINS homolog, G-protein 99.9 1.5E-20 5E-25 193.5 23.1 245 89-337 6-295 (338)
51 4i17_A Hypothetical protein; T 99.9 2.7E-20 9.2E-25 182.3 23.5 197 126-339 8-214 (228)
52 2vq2_A PILW, putative fimbrial 99.9 1.6E-19 5.5E-24 175.0 28.9 215 84-309 4-222 (225)
53 1xnf_A Lipoprotein NLPI; TPR, 99.9 1.5E-20 5E-25 188.8 20.2 264 24-328 2-269 (275)
54 3ulq_A Response regulator aspa 99.9 5.2E-20 1.8E-24 195.3 24.7 242 91-337 106-371 (383)
55 3mkr_A Coatomer subunit epsilo 99.9 1.3E-19 4.5E-24 184.8 25.9 254 23-328 29-288 (291)
56 4i17_A Hypothetical protein; T 99.8 1.3E-19 4.4E-24 177.3 23.1 153 156-316 4-166 (228)
57 3nf1_A KLC 1, kinesin light ch 99.8 2.7E-20 9.2E-25 190.1 17.8 251 83-337 22-310 (311)
58 2ond_A Cleavage stimulation fa 99.8 3.4E-19 1.2E-23 183.3 26.2 220 105-337 33-273 (308)
59 4abn_A Tetratricopeptide repea 99.8 1.9E-19 6.4E-24 196.8 24.7 190 139-339 82-292 (474)
60 1ouv_A Conserved hypothetical 99.8 1.2E-18 4.2E-23 175.4 27.1 233 23-305 2-258 (273)
61 3q15_A PSP28, response regulat 99.8 5.3E-19 1.8E-23 187.3 24.5 242 90-336 103-367 (378)
62 1qqe_A Vesicular transport pro 99.8 2.9E-19 9.9E-24 182.4 21.4 208 129-338 41-273 (292)
63 3qky_A Outer membrane assembly 99.8 3.4E-19 1.2E-23 178.4 20.9 188 124-316 14-245 (261)
64 3nf1_A KLC 1, kinesin light ch 99.8 8.6E-20 2.9E-24 186.3 15.9 271 12-301 12-310 (311)
65 3urz_A Uncharacterized protein 99.8 1.3E-18 4.5E-23 168.1 21.5 199 125-352 4-204 (208)
66 3as5_A MAMA; tetratricopeptide 99.8 3.2E-18 1.1E-22 160.1 20.8 171 124-302 7-177 (186)
67 3ulq_A Response regulator aspa 99.8 1.5E-17 5.1E-22 176.3 27.1 202 126-331 104-332 (383)
68 2pzi_A Probable serine/threoni 99.8 1E-18 3.4E-23 199.6 17.7 179 126-316 395-581 (681)
69 4ga2_A E3 SUMO-protein ligase 99.8 5.6E-19 1.9E-23 161.3 12.5 145 164-316 2-147 (150)
70 2xm6_A Protein corresponding t 99.8 1E-16 3.5E-21 175.9 32.8 279 24-337 108-435 (490)
71 1qqe_A Vesicular transport pro 99.8 5E-18 1.7E-22 173.2 20.3 223 89-313 38-284 (292)
72 3qky_A Outer membrane assembly 99.8 1.1E-17 3.8E-22 167.3 22.2 197 152-353 8-244 (261)
73 3as5_A MAMA; tetratricopeptide 99.8 9.1E-18 3.1E-22 157.0 20.2 171 158-338 7-177 (186)
74 3edt_B KLC 2, kinesin light ch 99.8 2.1E-18 7.2E-23 173.0 16.8 229 103-335 23-282 (283)
75 2ond_A Cleavage stimulation fa 99.8 6.8E-17 2.3E-21 166.0 27.7 183 142-334 33-232 (308)
76 3urz_A Uncharacterized protein 99.8 5.3E-18 1.8E-22 163.8 16.8 194 88-312 4-199 (208)
77 4ga2_A E3 SUMO-protein ligase 99.8 7.4E-19 2.5E-23 160.5 9.4 147 130-284 2-149 (150)
78 2xm6_A Protein corresponding t 99.8 5E-16 1.7E-20 170.4 33.8 281 19-334 31-360 (490)
79 1hz4_A MALT regulatory protein 99.8 1.4E-16 4.6E-21 168.0 27.9 282 28-336 15-324 (373)
80 2pzi_A Probable serine/threoni 99.8 5.8E-18 2E-22 193.3 18.4 175 99-285 402-584 (681)
81 1hz4_A MALT regulatory protein 99.8 3.2E-16 1.1E-20 165.1 29.8 248 88-337 14-285 (373)
82 3dra_A Protein farnesyltransfe 99.8 1.2E-16 4.1E-21 162.6 24.7 226 99-337 44-291 (306)
83 2ooe_A Cleavage stimulation fa 99.7 1.1E-15 3.8E-20 169.3 33.3 186 142-337 255-457 (530)
84 2yhc_A BAMD, UPF0169 lipoprote 99.7 1.9E-16 6.6E-21 154.7 22.6 190 125-338 4-217 (225)
85 3q15_A PSP28, response regulat 99.7 9.3E-17 3.2E-21 169.9 21.8 246 29-299 103-366 (378)
86 2yhc_A BAMD, UPF0169 lipoprote 99.7 2.3E-16 7.9E-21 154.2 21.9 159 158-339 3-181 (225)
87 4gco_A Protein STI-1; structur 99.7 9E-17 3.1E-21 141.9 16.3 121 185-313 5-125 (126)
88 2ifu_A Gamma-SNAP; membrane fu 99.7 4.3E-16 1.5E-20 160.0 23.9 199 100-302 3-227 (307)
89 3edt_B KLC 2, kinesin light ch 99.7 2.1E-16 7.1E-21 158.4 20.7 243 38-299 12-282 (283)
90 2r5s_A Uncharacterized protein 99.7 6E-17 2E-21 151.8 12.9 160 162-332 9-171 (176)
91 3qou_A Protein YBBN; thioredox 99.7 2.6E-16 9E-21 160.0 18.6 168 156-333 114-283 (287)
92 2ooe_A Cleavage stimulation fa 99.7 1.3E-15 4.5E-20 168.8 25.6 221 105-337 255-495 (530)
93 3e4b_A ALGK; tetratricopeptide 99.7 1.2E-15 4E-20 165.6 23.8 225 90-336 143-389 (452)
94 3qou_A Protein YBBN; thioredox 99.7 3.1E-16 1.1E-20 159.4 18.0 166 124-297 116-283 (287)
95 3gyz_A Chaperone protein IPGC; 99.7 6.9E-17 2.4E-21 147.2 11.1 123 220-344 21-143 (151)
96 3e4b_A ALGK; tetratricopeptide 99.7 2.2E-15 7.4E-20 163.5 24.8 190 126-336 142-353 (452)
97 4gco_A Protein STI-1; structur 99.7 2.6E-16 8.9E-21 138.9 14.1 117 154-278 8-124 (126)
98 2ifu_A Gamma-SNAP; membrane fu 99.7 5.3E-16 1.8E-20 159.3 18.0 194 139-338 5-227 (307)
99 2r5s_A Uncharacterized protein 99.7 2.4E-16 8.1E-21 147.7 12.9 163 126-297 7-172 (176)
100 4f3v_A ESX-1 secretion system 99.7 7.4E-16 2.5E-20 153.2 15.5 209 126-338 8-241 (282)
101 1p5q_A FKBP52, FK506-binding p 99.7 3.2E-17 1.1E-21 170.7 5.2 183 140-334 80-294 (336)
102 3gyz_A Chaperone protein IPGC; 99.7 4.2E-16 1.4E-20 142.0 11.8 118 178-303 21-138 (151)
103 3dss_A Geranylgeranyl transfer 99.7 3.7E-14 1.3E-18 145.0 27.0 223 105-338 47-308 (331)
104 3rjv_A Putative SEL1 repeat pr 99.6 4.9E-15 1.7E-19 143.4 18.3 179 142-336 3-199 (212)
105 3dra_A Protein farnesyltransfe 99.6 4.3E-14 1.5E-18 143.7 24.9 191 135-335 42-251 (306)
106 2vsy_A XCC0866; transferase, g 99.6 1.5E-14 5E-19 161.8 21.4 165 101-276 2-169 (568)
107 3rjv_A Putative SEL1 repeat pr 99.6 3.8E-14 1.3E-18 137.1 20.9 186 106-312 4-209 (212)
108 3q7a_A Farnesyltransferase alp 99.6 4.3E-14 1.5E-18 145.1 21.7 242 83-337 49-335 (349)
109 2vgx_A Chaperone SYCD; alterna 99.6 5.9E-15 2E-19 134.1 13.1 113 223-337 9-121 (148)
110 3dss_A Geranylgeranyl transfer 99.6 1.5E-13 5E-18 140.6 24.7 195 136-339 40-272 (331)
111 2fo7_A Synthetic consensus TPR 99.6 5.7E-14 2E-18 123.3 19.0 134 202-337 2-135 (136)
112 2vgx_A Chaperone SYCD; alterna 99.6 7.2E-15 2.4E-19 133.5 13.5 108 200-307 20-127 (148)
113 2c2l_A CHIP, carboxy terminus 99.6 1.8E-15 6.1E-20 153.3 9.4 198 125-336 4-201 (281)
114 2fo7_A Synthetic consensus TPR 99.6 8E-14 2.7E-18 122.3 19.1 135 160-302 2-136 (136)
115 2qfc_A PLCR protein; TPR, HTH, 99.6 1.1E-13 3.8E-18 140.8 22.8 172 125-298 75-266 (293)
116 2qfc_A PLCR protein; TPR, HTH, 99.6 7.3E-14 2.5E-18 142.2 20.2 177 157-337 73-269 (293)
117 1p5q_A FKBP52, FK506-binding p 99.6 2.6E-15 9E-20 156.2 9.3 162 137-298 125-294 (336)
118 2xcb_A PCRH, regulatory protei 99.6 1.6E-14 5.5E-19 130.0 12.3 105 200-304 17-121 (142)
119 3u3w_A Transcriptional activat 99.6 1.3E-13 4.4E-18 140.3 20.3 174 123-298 73-266 (293)
120 2fbn_A 70 kDa peptidylprolyl i 99.6 1.3E-14 4.3E-19 138.6 11.9 163 161-333 6-185 (198)
121 1hh8_A P67PHOX, NCF-2, neutrop 99.6 2.6E-13 8.9E-18 130.4 21.1 146 200-350 5-166 (213)
122 1dce_A Protein (RAB geranylger 99.6 1E-14 3.6E-19 161.8 12.2 188 140-337 44-270 (567)
123 3upv_A Heat shock protein STI1 99.5 1.5E-13 5.2E-18 120.5 16.9 116 200-315 3-124 (126)
124 1a17_A Serine/threonine protei 99.5 3.2E-13 1.1E-17 123.9 19.1 134 200-335 12-147 (166)
125 2xcb_A PCRH, regulatory protei 99.5 5.5E-14 1.9E-18 126.5 13.4 114 222-337 5-118 (142)
126 1xi4_A Clathrin heavy chain; a 99.5 1.6E-12 5.5E-17 151.0 28.8 187 126-336 1106-1311(1630)
127 4gcn_A Protein STI-1; structur 99.5 6.5E-14 2.2E-18 123.5 12.9 108 235-344 8-122 (127)
128 2e2e_A Formate-dependent nitri 99.5 1.9E-13 6.4E-18 127.6 16.6 138 211-350 20-161 (177)
129 3q7a_A Farnesyltransferase alp 99.5 6.4E-13 2.2E-17 136.4 21.7 183 126-316 55-255 (349)
130 1hh8_A P67PHOX, NCF-2, neutrop 99.5 4.1E-13 1.4E-17 129.0 18.8 130 127-267 8-153 (213)
131 4gcn_A Protein STI-1; structur 99.5 6.4E-13 2.2E-17 117.1 18.1 116 122-239 5-120 (127)
132 1xi4_A Clathrin heavy chain; a 99.5 4.3E-12 1.5E-16 147.5 28.5 250 31-329 989-1274(1630)
133 1a17_A Serine/threonine protei 99.5 8E-13 2.7E-17 121.1 18.3 131 125-263 13-145 (166)
134 3sz7_A HSC70 cochaperone (SGT) 99.5 4.5E-13 1.5E-17 123.5 16.6 115 200-314 10-124 (164)
135 3u3w_A Transcriptional activat 99.5 2.4E-13 8.1E-18 138.3 16.1 170 162-335 78-267 (293)
136 3upv_A Heat shock protein STI1 99.5 3.4E-13 1.2E-17 118.2 15.0 113 125-245 4-122 (126)
137 4f3v_A ESX-1 secretion system 99.5 2.7E-14 9.3E-19 142.0 8.6 199 100-311 18-249 (282)
138 2vyi_A SGTA protein; chaperone 99.5 7.6E-13 2.6E-17 115.5 17.1 120 200-321 11-130 (131)
139 2e2e_A Formate-dependent nitri 99.5 2.5E-13 8.6E-18 126.8 14.3 126 136-269 21-149 (177)
140 1kt0_A FKBP51, 51 kDa FK506-bi 99.5 5.7E-14 1.9E-18 152.5 10.8 152 171-332 246-413 (457)
141 3gw4_A Uncharacterized protein 99.5 9.5E-13 3.2E-17 125.1 18.1 161 136-298 3-176 (203)
142 2lni_A Stress-induced-phosphop 99.5 6.8E-13 2.3E-17 116.6 15.6 117 200-316 15-131 (133)
143 2fbn_A 70 kDa peptidylprolyl i 99.5 4.4E-14 1.5E-18 134.7 7.9 160 130-289 9-176 (198)
144 2c2l_A CHIP, carboxy terminus 99.5 1.9E-13 6.6E-18 138.3 11.2 168 156-338 1-168 (281)
145 3sz7_A HSC70 cochaperone (SGT) 99.5 1.4E-12 4.9E-17 120.1 16.2 108 231-340 7-114 (164)
146 2lni_A Stress-induced-phosphop 99.4 7.5E-13 2.6E-17 116.3 13.4 116 125-248 16-131 (133)
147 2vyi_A SGTA protein; chaperone 99.4 2.2E-12 7.4E-17 112.6 16.3 120 123-250 10-129 (131)
148 1b89_A Protein (clathrin heavy 99.4 1.4E-13 4.6E-18 144.6 9.9 242 28-336 33-274 (449)
149 1na0_A Designed protein CTPR3; 99.4 5.9E-12 2E-16 108.8 18.8 117 200-316 8-124 (125)
150 1kt0_A FKBP51, 51 kDa FK506-bi 99.4 6.8E-14 2.3E-18 151.8 7.4 154 138-291 247-407 (457)
151 1elw_A TPR1-domain of HOP; HOP 99.4 5.7E-12 1.9E-16 107.8 17.4 114 200-313 3-116 (118)
152 2hr2_A Hypothetical protein; a 99.4 4E-13 1.4E-17 121.3 10.2 114 200-337 10-134 (159)
153 2hr2_A Hypothetical protein; a 99.4 1.7E-12 5.9E-17 117.1 14.4 79 234-312 56-145 (159)
154 1hxi_A PEX5, peroxisome target 99.4 9.8E-13 3.3E-17 114.8 12.4 99 204-302 20-118 (121)
155 3gw4_A Uncharacterized protein 99.4 2.1E-12 7.1E-17 122.7 15.5 160 169-338 2-180 (203)
156 3rkv_A Putative peptidylprolyl 99.4 1.5E-12 5E-17 119.8 13.5 117 200-316 10-145 (162)
157 1dce_A Protein (RAB geranylger 99.4 2.8E-13 9.7E-18 150.3 10.3 187 104-301 45-270 (567)
158 3q49_B STIP1 homology and U bo 99.4 2.1E-12 7.3E-17 114.5 14.2 102 200-301 8-109 (137)
159 1na0_A Designed protein CTPR3; 99.4 7.1E-12 2.4E-16 108.2 17.2 116 159-282 9-124 (125)
160 3q49_B STIP1 homology and U bo 99.4 6.4E-12 2.2E-16 111.4 16.6 107 229-337 3-109 (137)
161 4b4t_Q 26S proteasome regulato 99.4 6.6E-12 2.3E-16 134.6 19.7 206 126-335 5-246 (434)
162 1hxi_A PEX5, peroxisome target 99.4 2.5E-12 8.4E-17 112.3 13.3 100 237-338 19-118 (121)
163 3rkv_A Putative peptidylprolyl 99.4 3.6E-12 1.2E-16 117.1 14.2 85 200-284 62-147 (162)
164 1b89_A Protein (clathrin heavy 99.4 4.5E-13 1.5E-17 140.7 8.7 208 89-338 33-240 (449)
165 3mv2_B Coatomer subunit epsilo 99.4 1.3E-11 4.5E-16 124.2 18.6 192 144-348 85-296 (310)
166 1elw_A TPR1-domain of HOP; HOP 99.4 1.6E-11 5.6E-16 104.8 16.3 111 126-244 5-115 (118)
167 3ro3_A PINS homolog, G-protein 99.4 8.9E-12 3E-16 112.9 15.1 102 125-228 9-116 (164)
168 3ro3_A PINS homolog, G-protein 99.4 9.1E-12 3.1E-16 112.8 15.0 141 159-301 9-161 (164)
169 1wao_1 Serine/threonine protei 99.4 3.2E-13 1.1E-17 147.2 5.6 129 200-330 5-135 (477)
170 2xev_A YBGF; tetratricopeptide 99.4 1.8E-11 6.1E-16 107.2 15.8 112 203-314 4-121 (129)
171 1wao_1 Serine/threonine protei 99.4 6.5E-13 2.2E-17 144.8 7.8 137 124-268 5-154 (477)
172 2dba_A Smooth muscle cell asso 99.3 1.9E-11 6.5E-16 109.5 15.9 112 201-312 28-142 (148)
173 2if4_A ATFKBP42; FKBP-like, al 99.3 1.5E-12 5.1E-17 135.4 9.7 138 200-338 178-332 (338)
174 3mv2_B Coatomer subunit epsilo 99.3 2.9E-11 9.9E-16 121.7 18.6 190 107-306 85-290 (310)
175 2dba_A Smooth muscle cell asso 99.3 2.2E-11 7.6E-16 109.0 15.9 108 230-339 23-133 (148)
176 1elr_A TPR2A-domain of HOP; HO 99.3 1.7E-11 5.8E-16 106.9 13.8 116 200-316 3-125 (131)
177 1ihg_A Cyclophilin 40; ppiase 99.3 1.6E-11 5.3E-16 129.2 15.8 126 200-327 222-363 (370)
178 2if4_A ATFKBP42; FKBP-like, al 99.3 1.6E-12 5.4E-17 135.2 8.1 158 122-304 176-334 (338)
179 4b4t_Q 26S proteasome regulato 99.3 4.8E-11 1.6E-15 127.8 19.9 203 94-298 10-245 (434)
180 1elr_A TPR2A-domain of HOP; HO 99.3 2.6E-11 8.9E-16 105.7 14.5 118 233-352 2-126 (131)
181 2xev_A YBGF; tetratricopeptide 99.3 7.8E-11 2.7E-15 103.0 16.8 112 162-278 5-119 (129)
182 1ihg_A Cyclophilin 40; ppiase 99.3 3.5E-11 1.2E-15 126.5 16.8 142 124-291 222-363 (370)
183 2kck_A TPR repeat; tetratricop 99.3 1.4E-11 4.9E-16 104.2 11.1 103 200-302 5-110 (112)
184 4e6h_A MRNA 3'-END-processing 99.3 3.7E-10 1.2E-14 127.1 25.3 230 106-340 327-576 (679)
185 1zu2_A Mitochondrial import re 99.3 9.3E-12 3.2E-16 112.0 9.3 92 212-303 13-125 (158)
186 3k9i_A BH0479 protein; putativ 99.3 6.3E-12 2.2E-16 108.7 7.5 101 213-313 2-105 (117)
187 2kck_A TPR repeat; tetratricop 99.3 2.2E-11 7.6E-16 103.0 10.3 106 155-268 2-110 (112)
188 3k9i_A BH0479 protein; putativ 99.2 2.6E-11 9E-16 104.8 9.5 104 171-282 2-108 (117)
189 1zu2_A Mitochondrial import re 99.2 1.8E-11 6E-16 110.2 8.5 90 137-234 14-124 (158)
190 4e6h_A MRNA 3'-END-processing 99.1 9.3E-09 3.2E-13 115.7 24.8 186 142-337 326-536 (679)
191 2kat_A Uncharacterized protein 99.0 1.6E-09 5.3E-14 93.0 12.2 83 253-337 3-85 (115)
192 2kat_A Uncharacterized protein 99.0 1.8E-09 6.1E-14 92.6 12.2 98 219-316 3-102 (115)
193 2l6j_A TPR repeat-containing p 99.0 2.3E-10 8E-15 96.9 6.2 88 235-324 4-97 (111)
194 1na3_A Designed protein CTPR2; 99.0 3.4E-09 1.2E-13 86.1 12.5 83 234-316 8-90 (91)
195 2l6j_A TPR repeat-containing p 99.0 3.4E-10 1.2E-14 95.9 6.6 95 200-294 3-103 (111)
196 3n71_A Histone lysine methyltr 99.0 3.8E-09 1.3E-13 114.4 14.4 133 165-297 315-463 (490)
197 1na3_A Designed protein CTPR2; 99.0 8E-09 2.7E-13 83.8 12.9 84 200-283 8-91 (91)
198 3ma5_A Tetratricopeptide repea 99.0 3.3E-09 1.1E-13 88.7 10.4 88 265-354 3-90 (100)
199 3n71_A Histone lysine methyltr 99.0 3.6E-09 1.2E-13 114.6 13.5 137 129-265 313-465 (490)
200 1klx_A Cysteine rich protein B 98.8 5.6E-08 1.9E-12 86.5 14.7 88 207-298 31-126 (138)
201 3ma5_A Tetratricopeptide repea 98.8 1.6E-08 5.4E-13 84.4 10.4 87 230-316 2-90 (100)
202 1klx_A Cysteine rich protein B 98.8 7.7E-08 2.6E-12 85.5 14.5 119 140-276 10-136 (138)
203 2kc7_A BFR218_protein; tetratr 98.8 6.9E-09 2.4E-13 86.0 6.9 87 206-300 5-92 (99)
204 2kc7_A BFR218_protein; tetratr 98.7 2.3E-08 7.9E-13 82.8 6.8 89 129-233 4-93 (99)
205 3ly7_A Transcriptional activat 98.7 3.6E-07 1.2E-11 93.5 16.8 138 202-342 197-347 (372)
206 3u64_A Protein TP_0956; tetrat 98.7 6.8E-07 2.3E-11 87.7 17.9 108 229-337 146-272 (301)
207 3ly7_A Transcriptional activat 98.6 6.9E-07 2.4E-11 91.4 16.2 154 116-303 188-344 (372)
208 2uy1_A Cleavage stimulation fa 98.6 1.4E-05 4.8E-10 86.9 27.1 175 141-331 195-380 (493)
209 2uy1_A Cleavage stimulation fa 98.6 1.5E-05 5E-10 86.8 25.9 147 176-337 196-352 (493)
210 3q3e_A HMW1C-like glycosyltran 98.5 4E-09 1.4E-13 114.7 -4.7 112 447-576 278-398 (631)
211 3qwp_A SET and MYND domain-con 98.4 9.1E-07 3.1E-11 94.3 12.1 116 166-281 294-425 (429)
212 3qww_A SET and MYND domain-con 98.4 1.7E-06 5.7E-11 92.2 13.9 101 171-271 310-423 (433)
213 3qww_A SET and MYND domain-con 98.4 2.3E-06 7.8E-11 91.1 14.4 106 133-238 306-424 (433)
214 3bee_A Putative YFRE protein; 98.4 1.6E-06 5.5E-11 71.0 9.9 71 265-337 2-75 (93)
215 3qwp_A SET and MYND domain-con 98.4 1.4E-06 4.8E-11 92.9 12.1 118 129-246 291-424 (429)
216 3bee_A Putative YFRE protein; 98.4 3.2E-06 1.1E-10 69.2 11.5 72 231-302 2-76 (93)
217 1pc2_A Mitochondria fission pr 98.4 4.3E-06 1.5E-10 74.2 12.5 85 252-338 15-104 (152)
218 3u64_A Protein TP_0956; tetrat 98.3 1.4E-05 4.6E-10 78.6 16.9 86 216-301 178-272 (301)
219 2e5r_A Dystrobrevin alpha; ZZ 98.3 1.3E-07 4.6E-12 70.2 1.9 57 582-640 4-62 (63)
220 1pc2_A Mitochondria fission pr 98.3 1E-05 3.5E-10 71.7 13.4 94 141-241 14-111 (152)
221 2v5f_A Prolyl 4-hydroxylase su 98.3 7.3E-06 2.5E-10 68.6 11.7 74 237-310 7-87 (104)
222 2v5f_A Prolyl 4-hydroxylase su 98.2 1.1E-05 3.8E-10 67.5 11.6 77 200-276 4-87 (104)
223 4g26_A Pentatricopeptide repea 98.2 0.0001 3.5E-09 80.2 22.3 178 128-313 29-220 (501)
224 4g26_A Pentatricopeptide repea 98.1 0.00035 1.2E-08 75.9 23.4 175 161-344 28-216 (501)
225 4h7y_A Dual specificity protei 97.8 0.0004 1.4E-08 60.5 14.2 118 154-272 8-131 (161)
226 1nzn_A CGI-135 protein, fissio 97.7 0.00055 1.9E-08 58.4 12.0 96 217-312 17-117 (126)
227 1nzn_A CGI-135 protein, fissio 97.6 0.00093 3.2E-08 57.0 12.5 95 140-241 16-114 (126)
228 4h7y_A Dual specificity protei 97.4 0.0013 4.3E-08 57.4 10.6 106 230-338 8-127 (161)
229 3ffl_A Anaphase-promoting comp 97.2 0.0084 2.9E-07 53.4 13.8 141 160-313 21-165 (167)
230 3ffl_A Anaphase-promoting comp 97.1 0.0037 1.3E-07 55.7 10.6 136 126-279 21-165 (167)
231 2fc7_A ZZZ3 protein; structure 96.9 0.00042 1.4E-08 54.3 2.9 41 584-624 15-60 (82)
232 2dip_A Zinc finger SWIM domain 96.9 0.00025 8.5E-09 57.6 1.4 41 584-624 25-67 (98)
233 3txn_A 26S proteasome regulato 96.8 0.49 1.7E-05 48.9 25.5 236 89-329 20-279 (394)
234 1y8m_A FIS1; mitochondria, unk 96.6 0.062 2.1E-06 46.5 14.1 71 235-305 39-113 (144)
235 1y8m_A FIS1; mitochondria, unk 96.5 0.097 3.3E-06 45.3 14.7 74 158-238 38-114 (144)
236 3txn_A 26S proteasome regulato 96.3 0.2 6.7E-06 51.9 18.5 171 126-298 20-210 (394)
237 3o48_A Mitochondria fission 1 96.2 0.059 2E-06 46.0 11.8 72 159-237 40-114 (134)
238 3o48_A Mitochondria fission 1 96.2 0.044 1.5E-06 46.8 10.8 70 236-305 41-114 (134)
239 4gns_B Protein CSD3, chitin bi 96.0 0.032 1.1E-06 62.7 12.0 115 172-295 261-397 (754)
240 4gns_B Protein CSD3, chitin bi 96.0 0.055 1.9E-06 60.8 13.9 123 138-261 261-397 (754)
241 1tot_A CREB-binding protein; z 95.7 0.0012 4.1E-08 46.7 -0.9 47 588-642 4-51 (52)
242 4b4t_P 26S proteasome regulato 95.4 1.9 6.3E-05 45.6 22.3 195 102-298 30-247 (445)
243 3mkq_A Coatomer beta'-subunit; 95.4 0.29 9.9E-06 55.9 17.2 76 212-292 663-746 (814)
244 3mkq_A Coatomer beta'-subunit; 95.0 0.95 3.3E-05 51.5 20.2 75 129-227 633-707 (814)
245 3kae_A CDC27, possible protein 95.0 1.8 6E-05 38.4 19.0 106 127-237 35-150 (242)
246 4b4t_P 26S proteasome regulato 94.9 2 6.9E-05 45.3 20.5 104 159-264 137-247 (445)
247 2ff4_A Probable regulatory pro 94.8 0.74 2.5E-05 47.7 16.6 124 206-344 120-251 (388)
248 1zbp_A Hypothetical protein VP 94.8 0.62 2.1E-05 45.0 14.4 58 134-191 6-63 (273)
249 1ya0_A SMG-7 transcript varian 94.1 0.27 9.1E-06 52.7 11.4 81 201-281 152-232 (497)
250 4b4t_R RPN7, 26S proteasome re 93.9 0.35 1.2E-05 51.0 12.0 103 126-230 132-237 (429)
251 1ya0_A SMG-7 transcript varian 93.9 0.27 9.3E-06 52.6 11.0 80 237-316 154-233 (497)
252 2ff4_A Probable regulatory pro 93.9 0.88 3E-05 47.2 14.8 63 235-297 171-233 (388)
253 1qsa_A Protein (soluble lytic 93.7 6.1 0.00021 43.4 21.6 209 122-333 99-347 (618)
254 4b4t_S RPN3, 26S proteasome re 93.3 1.5 5E-05 46.7 15.1 193 132-337 143-376 (523)
255 1zbp_A Hypothetical protein VP 92.5 2.2 7.6E-05 41.1 13.8 119 210-337 6-132 (273)
256 4b4t_R RPN7, 26S proteasome re 91.7 0.83 2.8E-05 48.1 11.0 103 158-265 130-238 (429)
257 3mkq_B Coatomer subunit alpha; 91.0 5.6 0.00019 35.8 14.0 103 211-333 15-117 (177)
258 3spa_A Mtrpol, DNA-directed RN 90.7 2.1 7.3E-05 49.3 13.4 100 200-299 126-231 (1134)
259 3kae_A CDC27, possible protein 90.7 8.7 0.0003 34.1 17.1 182 137-337 14-240 (242)
260 3mkq_B Coatomer subunit alpha; 90.1 6.3 0.00022 35.4 13.5 46 135-185 15-60 (177)
261 4b4t_S RPN3, 26S proteasome re 90.0 0.37 1.3E-05 51.3 6.1 134 167-302 144-303 (523)
262 3spa_A Mtrpol, DNA-directed RN 90.0 2.8 9.6E-05 48.4 13.5 99 235-335 127-231 (1134)
263 1qsa_A Protein (soluble lytic 88.7 31 0.0011 37.7 22.7 55 273-331 385-439 (618)
264 4fhn_B Nucleoporin NUP120; pro 88.3 4.2 0.00014 48.5 14.4 125 131-259 818-962 (1139)
265 4ady_A RPN2, 26S proteasome re 87.4 15 0.0005 42.2 17.2 238 89-340 414-663 (963)
266 2wpv_A GET4, UPF0363 protein Y 87.4 24 0.00082 34.9 22.0 127 97-225 22-158 (312)
267 4fhn_B Nucleoporin NUP120; pro 87.3 5.4 0.00019 47.5 14.6 139 165-316 818-984 (1139)
268 3lpz_A GET4 (YOR164C homolog); 76.9 63 0.0021 32.2 22.0 80 233-333 134-215 (336)
269 4ady_A RPN2, 26S proteasome re 74.6 97 0.0033 35.6 17.8 197 128-333 379-588 (963)
270 2cor_A Pinch protein; LIM doma 69.4 2.4 8.1E-05 32.5 2.3 40 580-621 30-70 (79)
271 4b4t_O 26S proteasome regulato 67.7 39 0.0013 34.6 11.8 97 133-229 84-197 (393)
272 4rxn_A Rubredoxin; electron tr 67.5 2.4 8.3E-05 29.8 1.7 32 588-620 1-44 (54)
273 2gmg_A Hypothetical protein PF 66.5 2.4 8.1E-05 34.2 1.7 40 588-632 65-104 (105)
274 3lpz_A GET4 (YOR164C homolog); 64.7 1.2E+02 0.004 30.2 26.5 126 97-224 21-159 (336)
275 4gq2_M Nucleoporin NUP120; bet 63.2 64 0.0022 37.4 13.8 52 131-186 816-867 (950)
276 1eg3_A Dystrophin; EF-hand lik 61.2 36 0.0012 32.6 9.3 107 458-569 129-246 (261)
277 1wy6_A Hypothetical protein ST 59.2 46 0.0016 28.5 8.3 52 280-333 102-153 (172)
278 6rxn_A Rubredoxin; electron tr 57.8 4.7 0.00016 27.3 1.7 32 588-620 2-38 (46)
279 1e8j_A Rubredoxin; iron-sulfur 57.5 4.5 0.00016 28.2 1.6 32 589-621 2-45 (52)
280 2iyb_E Testin, TESS, TES; LIM 57.1 2.5 8.5E-05 30.9 0.3 41 579-620 18-62 (65)
281 4gq2_M Nucleoporin NUP120; bet 56.8 73 0.0025 36.9 12.8 28 305-334 899-926 (950)
282 1v6g_A Actin binding LIM prote 56.7 4.2 0.00014 31.2 1.5 58 567-628 19-77 (81)
283 2kn9_A Rubredoxin; metalloprot 54.6 3.8 0.00013 31.4 0.9 33 588-621 25-69 (81)
284 1wig_A KIAA1808 protein; LIM d 54.6 5.3 0.00018 30.0 1.8 41 580-621 20-62 (73)
285 3esl_A Checkpoint serine/threo 54.3 1.3E+02 0.0043 27.5 11.2 78 269-349 80-161 (202)
286 2wpv_A GET4, UPF0363 protein Y 54.2 1.7E+02 0.0058 28.7 22.4 138 104-259 13-158 (312)
287 1wy6_A Hypothetical protein ST 53.9 54 0.0018 28.1 7.8 57 134-190 100-156 (172)
288 3ll8_B Calcineurin subunit B t 52.4 20 0.00068 30.4 5.6 102 462-567 39-145 (155)
289 1x61_A Thyroid receptor intera 50.9 4.6 0.00016 30.0 0.9 41 579-620 21-62 (72)
290 2bec_A Calcineurin B homologou 50.7 20 0.00067 32.4 5.5 97 463-566 63-183 (202)
291 1x68_A FHL5 protein; four-and- 50.6 6.4 0.00022 29.7 1.7 43 580-623 24-67 (76)
292 2k2u_B Alpha trans-inducing pr 49.9 5.9 0.0002 23.9 1.0 10 558-567 18-27 (35)
293 1dx8_A Rubredoxin; electron tr 48.7 7.6 0.00026 28.9 1.7 33 588-621 5-49 (70)
294 3ox6_A Calcium-binding protein 48.1 16 0.00056 30.8 4.3 99 463-565 49-152 (153)
295 2v3b_B Rubredoxin 2, rubredoxi 47.0 7 0.00024 27.6 1.3 32 589-621 2-45 (55)
296 1nyp_A Pinch protein; LIM doma 46.8 6 0.0002 28.8 0.9 41 580-621 20-61 (66)
297 1x4l_A Skeletal muscle LIM-pro 46.5 8.9 0.0003 28.4 1.9 43 580-623 24-67 (72)
298 2ggz_A Guanylyl cyclase-activa 45.3 18 0.00063 33.0 4.4 105 461-569 57-167 (211)
299 2jul_A Calsenilin; EF-hand, ca 44.5 23 0.00079 33.6 5.1 101 461-565 129-240 (256)
300 2d8z_A Four and A half LIM dom 44.5 6.7 0.00023 28.9 0.9 41 580-621 20-61 (70)
301 2cur_A Skeletal muscle LIM-pro 44.0 6.5 0.00022 28.9 0.8 40 580-620 20-60 (69)
302 2l2e_A Calcium-binding protein 44.0 31 0.0011 30.6 5.6 102 461-566 63-175 (190)
303 2cuq_A Four and A half LIM dom 43.3 7.7 0.00026 29.4 1.1 49 570-621 22-71 (80)
304 2dlo_A Thyroid receptor-intera 42.9 7.4 0.00025 29.7 0.9 51 569-621 21-72 (81)
305 2w2u_A Hypothetical P60 katani 42.1 38 0.0013 26.1 4.9 26 204-229 22-47 (83)
306 1s24_A Rubredoxin 2; electron 42.1 8.4 0.00029 30.0 1.1 32 588-620 33-76 (87)
307 2ehe_A Four and A half LIM dom 41.0 13 0.00045 28.3 2.1 41 580-621 32-73 (82)
308 3ax2_A Mitochondrial import re 40.6 67 0.0023 24.0 5.8 32 205-236 21-52 (73)
309 1jba_A GCAP-2, protein (guanyl 40.6 34 0.0012 30.9 5.4 102 461-566 59-176 (204)
310 4g9i_A Hydrogenase maturation 40.4 9.4 0.00032 43.0 1.6 47 581-627 118-171 (772)
311 2v6y_A AAA family ATPase, P60 40.3 41 0.0014 25.8 4.9 22 208-229 18-39 (83)
312 3t5x_A PCI domain-containing p 40.0 66 0.0023 29.4 7.2 33 125-157 14-46 (203)
313 2egq_A FHL1 protein; LIM domai 38.7 6.3 0.00021 29.7 -0.1 39 580-619 35-74 (77)
314 2ijq_A Hypothetical protein; s 38.1 93 0.0032 27.3 7.3 68 163-230 36-104 (161)
315 1s6c_A KV4 potassium channel-i 38.1 35 0.0012 30.0 5.0 102 461-566 56-168 (183)
316 3ax2_A Mitochondrial import re 36.7 1.3E+02 0.0045 22.4 6.9 34 128-161 20-53 (73)
317 2lmt_A Calmodulin-related prot 35.2 24 0.00082 30.0 3.2 98 463-565 48-146 (148)
318 3t5x_A PCI domain-containing p 34.8 1E+02 0.0035 28.1 7.6 57 159-218 14-70 (203)
319 3ubw_A 14-3-3E, 14-3-3 protein 34.5 3.1E+02 0.01 26.0 13.1 47 286-333 173-227 (261)
320 2dar_A PDZ and LIM domain prot 34.3 12 0.00042 29.1 1.0 41 580-621 40-81 (90)
321 1fpw_A Yeast frequenin, calciu 33.5 42 0.0014 29.6 4.7 101 462-566 64-175 (190)
322 1x6a_A LIMK-2, LIM domain kina 33.4 17 0.00057 27.6 1.6 42 580-621 30-73 (81)
323 1nya_A Calerythrin; EF-hand, m 33.4 54 0.0018 28.3 5.4 97 462-565 59-163 (176)
324 1o9d_A 14-3-3-like protein C; 33.4 3.2E+02 0.011 25.9 11.3 48 286-334 152-207 (260)
325 2co8_A NEDD9 interacting prote 33.0 33 0.0011 26.1 3.3 45 581-625 32-78 (82)
326 1yk4_A Rubredoxin, RD; electro 32.9 16 0.00056 25.3 1.3 29 591-620 3-43 (52)
327 3iqu_A 14-3-3 protein sigma; s 32.9 3.1E+02 0.011 25.6 14.1 47 286-333 150-204 (236)
328 2lhi_A Calmodulin, serine/thre 32.5 68 0.0023 28.2 5.9 99 462-566 48-147 (176)
329 3dd4_A KV channel-interacting 32.3 60 0.002 30.0 5.7 102 461-566 102-214 (229)
330 1s6i_A CDPK, calcium-dependent 31.9 50 0.0017 29.4 4.9 97 463-566 48-144 (188)
331 3ubw_A 14-3-3E, 14-3-3 protein 31.8 3.4E+02 0.012 25.7 16.7 169 127-297 33-227 (261)
332 1m45_A MLC1P, myosin light cha 31.6 30 0.001 29.1 3.2 99 462-565 41-146 (148)
333 1g8i_A Frequenin, neuronal cal 31.5 30 0.001 30.6 3.4 100 462-565 64-174 (190)
334 3f6q_B LIM and senescent cell 31.3 11 0.00037 27.7 0.2 39 581-620 29-68 (72)
335 1q80_A SCP, sarcoplasmic calci 30.9 71 0.0024 27.4 5.8 46 517-565 110-155 (174)
336 2d8x_A Protein pinch; LIM doma 30.7 14 0.00048 27.1 0.7 41 580-621 20-61 (70)
337 1lko_A Rubrerythrin all-iron(I 30.2 11 0.00039 34.3 0.2 28 588-621 153-180 (191)
338 3t5v_B Nuclear mRNA export pro 29.9 2E+02 0.0067 30.0 9.5 92 101-192 139-254 (455)
339 1rji_A BMKX, potassium channel 29.7 23 0.00079 20.6 1.3 18 592-622 12-29 (31)
340 2br9_A 14-3-3E, 14-3-3 protein 29.7 3.5E+02 0.012 25.2 11.8 47 286-333 147-201 (234)
341 1x4k_A Skeletal muscle LIM-pro 29.5 11 0.00039 27.7 0.0 41 580-621 22-63 (72)
342 1x64_A Alpha-actinin-2 associa 29.4 16 0.00055 28.3 0.9 41 580-621 40-81 (89)
343 3t5v_B Nuclear mRNA export pro 29.3 1.4E+02 0.005 31.0 8.4 95 140-234 141-254 (455)
344 1a7i_A QCRP2 (LIM1); LIM domai 29.3 12 0.00042 28.4 0.2 41 580-621 23-64 (81)
345 2l3k_A Rhombotin-2, linker, LI 29.3 26 0.00088 29.2 2.2 41 580-621 25-67 (123)
346 1yuz_A Nigerythrin; rubrythrin 28.9 20 0.00067 33.0 1.5 26 589-621 170-195 (202)
347 3iqu_A 14-3-3 protein sigma; s 28.6 3.6E+02 0.012 25.1 14.9 169 127-297 10-204 (236)
348 1bjf_A Neurocalcin delta; calc 28.5 79 0.0027 27.8 5.7 101 461-565 63-174 (193)
349 2br9_A 14-3-3E, 14-3-3 protein 28.5 3.6E+02 0.012 25.1 15.7 46 252-297 147-201 (234)
350 2jnf_A Troponin C; stretch act 28.5 39 0.0013 28.7 3.4 100 462-566 51-155 (158)
351 2hpk_A Photoprotein berovin; s 28.4 97 0.0033 27.7 6.4 93 466-565 86-189 (208)
352 3khe_A Calmodulin-like domain 28.3 26 0.00089 31.0 2.3 103 456-565 82-184 (191)
353 3uzd_A 14-3-3 protein gamma; s 28.1 3.8E+02 0.013 25.2 14.7 47 286-333 148-202 (248)
354 1rut_X Flinc4, fusion protein 28.0 22 0.00074 32.2 1.7 47 580-627 86-134 (188)
355 1wfd_A Hypothetical protein 15 27.9 83 0.0029 24.6 4.9 33 175-230 12-44 (93)
356 2crb_A Nuclear receptor bindin 27.8 1.1E+02 0.0038 23.9 5.2 29 125-153 15-43 (97)
357 2wvi_A Mitotic checkpoint seri 27.7 3.1E+02 0.011 24.0 10.8 46 288-335 79-126 (164)
358 3qrx_A Centrin; calcium-bindin 27.7 27 0.00093 30.1 2.3 100 462-566 65-165 (169)
359 1wyh_A SLIM 2, skeletal muscle 27.4 17 0.00057 26.8 0.6 41 580-621 22-63 (72)
360 3na7_A HP0958; flagellar bioge 27.2 13 0.00044 35.7 -0.0 30 590-619 198-229 (256)
361 1g47_A Pinch protein; LIM doma 27.1 18 0.00062 27.0 0.8 39 581-620 29-68 (77)
362 1o9d_A 14-3-3-like protein C; 27.1 4.1E+02 0.014 25.2 16.7 46 252-297 152-206 (260)
363 2cwy_A Hypothetical protein TT 27.1 1.3E+02 0.0044 23.6 5.8 61 165-229 7-67 (94)
364 2crb_A Nuclear receptor bindin 26.6 1.1E+02 0.0039 23.9 5.1 29 200-228 14-42 (97)
365 2lvv_A Flagellar calcium-bindi 26.3 47 0.0016 30.6 3.8 102 460-565 91-197 (226)
366 3uzd_A 14-3-3 protein gamma; s 26.1 4.2E+02 0.014 24.9 15.8 55 128-182 7-63 (248)
367 3fwb_A Cell division control p 25.9 40 0.0014 28.6 3.0 100 462-566 60-160 (161)
368 2d8n_A Recoverin; structural g 25.9 78 0.0027 28.3 5.2 101 461-565 71-184 (207)
369 2h2k_A Protein S100-A13; calci 25.7 71 0.0024 25.6 4.2 49 517-565 40-89 (106)
370 2bl0_C Myosin regulatory light 25.7 50 0.0017 27.3 3.6 97 463-565 44-141 (142)
371 1x62_A C-terminal LIM domain p 25.6 15 0.00051 27.8 0.0 50 569-621 21-71 (79)
372 2r2i_A Guanylyl cyclase-activa 25.5 47 0.0016 29.7 3.5 101 461-565 52-158 (198)
373 2lv7_A Calcium-binding protein 25.4 84 0.0029 24.7 4.6 63 497-564 36-98 (100)
374 1s1e_A KV channel interacting 25.3 79 0.0027 29.0 5.2 102 461-566 89-201 (224)
375 2xjy_A Rhombotin-2; oncoprotei 25.3 21 0.00072 30.0 0.9 39 581-620 84-124 (131)
376 2w2u_A Hypothetical P60 katani 25.1 1.2E+02 0.0042 23.1 5.2 19 135-153 29-47 (83)
377 2cu8_A Cysteine-rich protein 2 25.1 19 0.00067 26.8 0.6 41 580-621 25-67 (76)
378 2l4z_A DNA endonuclease RBBP8, 25.1 21 0.00073 29.8 0.9 40 580-620 77-119 (123)
379 2ct9_A Calcium-binding protein 24.9 70 0.0024 28.8 4.6 99 464-569 64-185 (208)
380 2aao_A CDPK, calcium-dependent 24.9 31 0.0011 29.6 2.1 97 463-566 65-161 (166)
381 2cpt_A SKD1 protein, vacuolar 24.8 91 0.0031 25.7 4.7 33 175-230 15-47 (117)
382 1x63_A Skeletal muscle LIM-pro 24.0 19 0.00064 27.4 0.3 41 580-621 32-73 (82)
383 3nxa_A Protein S100-A16; S100 23.7 55 0.0019 25.9 3.2 26 540-565 57-82 (100)
384 2egq_A FHL1 protein; LIM domai 23.3 37 0.0013 25.2 2.0 20 583-602 8-27 (77)
385 1om2_A Protein (mitochondrial 23.0 99 0.0034 24.4 4.3 31 204-234 23-53 (95)
386 2dl1_A Spartin; SPG20, MIT, st 22.9 1.1E+02 0.0037 25.1 4.7 17 174-190 18-34 (116)
387 2wvi_A Mitotic checkpoint seri 22.8 3.8E+02 0.013 23.4 10.6 69 117-191 58-128 (164)
388 3esl_A Checkpoint serine/threo 22.7 4.3E+02 0.015 23.9 15.7 73 118-191 73-147 (202)
389 1x3h_A Leupaxin; paxillin fami 22.5 40 0.0014 25.3 2.0 27 581-607 31-58 (80)
390 2v6y_A AAA family ATPase, P60 22.2 1.5E+02 0.0051 22.6 5.2 18 136-153 22-39 (83)
391 1e7l_A GP49, recombination end 22.2 29 0.001 30.2 1.2 36 590-625 20-69 (157)
392 2rpa_A Katanin P60 ATPase-cont 22.1 75 0.0026 24.1 3.4 27 128-154 15-41 (78)
393 3k21_A PFCDPK3, calcium-depend 21.6 86 0.0029 27.8 4.5 96 463-565 89-190 (191)
394 2ijq_A Hypothetical protein; s 21.5 4E+02 0.014 23.1 11.0 63 128-190 35-106 (161)
395 3pwf_A Rubrerythrin; non heme 21.1 28 0.00094 31.0 0.9 24 590-620 138-161 (170)
396 2f33_A Calbindin; EF-hand, Ca2 20.9 4.1E+02 0.014 24.2 9.5 102 461-566 58-175 (263)
397 1om2_A Protein (mitochondrial 20.6 1.8E+02 0.0062 22.9 5.4 30 128-157 23-52 (95)
398 3tvj_I Protease inhibitor SGPI 20.6 25 0.00086 22.5 0.3 18 601-624 9-28 (38)
399 2jtn_A LIM domain-binding prot 20.4 18 0.00062 32.5 -0.5 41 581-621 137-179 (182)
400 3h4s_E KCBP interacting Ca2+-b 20.4 26 0.00089 29.4 0.6 25 541-565 80-104 (135)
401 2npm_A 14-3-3 domain containin 20.3 2.7E+02 0.0093 26.4 7.6 53 176-229 173-226 (260)
402 1x6a_A LIMK-2, LIM domain kina 20.2 56 0.0019 24.5 2.4 37 583-619 8-45 (81)
403 2mys_C Myosin; muscle protein, 20.2 1.1E+02 0.0039 25.1 4.8 47 517-565 101-147 (149)
404 1iml_A CRIP, cysteine rich int 20.1 27 0.00094 25.9 0.6 41 580-621 16-58 (76)
405 2rpa_A Katanin P60 ATPase-cont 20.1 1E+02 0.0035 23.4 3.7 28 162-189 15-42 (78)
No 1
>4gyw_A UDP-N-acetylglucosamine--peptide N- acetylglucosaminyltransferase 110 kDa subunit...; GT-B, glycosyltransferase, glcnacylation, transferase-peptid; HET: UDP NAG; 1.70A {Homo sapiens} PDB: 3pe3_A* 3pe4_A* 4ay5_A* 4ay6_A* 3tax_A* 4gyy_A* 4gz3_A* 4gz5_A* 4gz6_A*
Probab=100.00 E-value=3.5e-39 Score=367.24 Aligned_cols=352 Identities=16% Similarity=0.157 Sum_probs=256.8
Q ss_pred hCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhccCCCchhchHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCC
Q 006120 154 LQPTDVRPHFRAGNCLYVLGRYREAKEEYLLALEAAETGGNQWAYLLPQIYVNLGIALEGEGMVLSACEYYRESAILCPT 233 (660)
Q Consensus 154 ~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~ 233 (660)
..|+++.++.++|.++..+|++++|+..|+++++++|+ .+.++.++|.++..+|++++|+.+|+++++++|+
T Consensus 4 s~P~~a~al~nLG~~~~~~G~~~eAi~~~~kAl~l~P~--------~~~a~~nLg~~l~~~g~~~eA~~~~~~Al~l~P~ 75 (723)
T 4gyw_A 4 SCPTHADSLNNLANIKREQGNIEEAVRLYRKALEVFPE--------FAAAHSNLASVLQQQGKLQEALMHYKEAIRISPT 75 (723)
T ss_dssp --CHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSC--------CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT
T ss_pred CCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC--------CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC
Confidence 45788889999999999999999999999999999988 7888999999999999999999999999999999
Q ss_pred cHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhCCChHHHHHHHHHHHHhCCCCHHHHHHHHHHH
Q 006120 234 HFRALKLLGSALFGVGEYRAAVKALEEAIFIKPDYADAHCDLASALHAMGEDERAIEVFQKAIDLKPGHVDALYNLGGLY 313 (660)
Q Consensus 234 ~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~La~~~ 313 (660)
++.++.++|.++..+|++++|++.|+++++++|+++.+|.++|.+|..+|++++|+..|+++++++|+++.++.++|.++
T Consensus 76 ~~~a~~nLg~~l~~~g~~~~A~~~~~kAl~l~P~~~~a~~~Lg~~~~~~g~~~eAi~~~~~Al~l~P~~~~a~~~L~~~l 155 (723)
T 4gyw_A 76 FADAYSNMGNTLKEMQDVQGALQCYTRAIQINPAFADAHSNLASIHKDSGNIPEAIASYRTALKLKPDFPDAYCNLAHCL 155 (723)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSCCHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHhhhhhHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHhcCCCHHHHHHHHHHHHcccCChhHHHHHHHHHHHHHHhccCCCCCCCCCCccccCcchHHhhchhhhhhhhHHHHhc
Q 006120 314 MDLGAGETEEAKKALKEALKMTNRVELHDAVSHLKQLQKKKSKGNRGTNGEGGFDIVEPSKFKTVGERTTVRQDLANALE 393 (660)
Q Consensus 314 ~~~~~g~~~eA~~~~~~al~l~p~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~al~ 393 (660)
..+ |++++|.+.+++++++.|+... ....... .+.. .........+..++.
T Consensus 156 ~~~--g~~~~A~~~~~kal~l~~~~~~--------------~~~l~~~--~~~~-----------~l~~~~~~~~~~aia 206 (723)
T 4gyw_A 156 QIV--CDWTDYDERMKKLVSIVADQLE--------------KNRLPSV--HPHH-----------SMLYPLSHGFRKAIA 206 (723)
T ss_dssp HHT--TCCTTHHHHHHHHHHHHHHHHH--------------TTCCCSS--CTTG-----------GGGSCCCHHHHHHHH
T ss_pred Hhc--ccHHHHHHHHHHHHHhChhHHh--------------hccCccc--chhh-----------hhhhhcCHHHHHHHH
Confidence 988 9999999999999887654110 0000000 0000 000001111111110
Q ss_pred CHHHHHHHHHhccCHHHHHHHhhCC-C-ccccccCCCCCCCCccCcchHHHHHhhhccCCCcchHHHHHHHHHHhhhhcc
Q 006120 394 IRAFQKITRLSRCDVELLKKEMSET-D-VPVSYSGGGGPQKSIRKPNLEEILRKFLHFLKPETFQGAVKAINERILSVLD 471 (660)
Q Consensus 394 ~~~~~~~~~~~~~~~~~~~~~l~~~-~-~~~~~~~~~~~~~~ir~~~~~~~~~~~iGY~S~df~~H~v~~l~~~~l~~hD 471 (660)
...... ........ . ....+.....+.++|| |||||+||++|||++|+.++|++||
T Consensus 207 ----~r~~~~-------~~~~~~~~~~~~~~~~~~~~~~~~klr-----------IGyvS~df~~H~v~~~~~~~~~~~d 264 (723)
T 4gyw_A 207 ----ERHGNL-------CLDKINVLHKPPYEHPKDLKLSDGRLR-----------VGYVSSDFGNHPTSHLMQSIPGMHN 264 (723)
T ss_dssp ----HHHHHH-------HHHHHHTTTCCCCCCCCSSTTTTTCEE-----------EEEEESCSSSSHHHHHHTTHHHHSC
T ss_pred ----HHHHHh-------hhhhhhcccCccccCccccccccccce-----------eeeechhhccCcHHHHHHHHHHHhc
Confidence 000000 11111111 1 1111222334567788 9999999999999999999999999
Q ss_pred CCCcccccchhhhhhhcccCCCCHHHHHHhhhhhhcccccCCC-C----ccchhccHHHHHHHhHHHhccCCCchhhhhh
Q 006120 472 ETGSARVDLGMFYAILAPICSGSPEKRKRVAFDALLWRPVNEG-S----TQVRKVDAVRYIKLLRAVYIPSHGVSEMMEV 546 (660)
Q Consensus 472 r~g~~~fev~~y~~~~~~~~~~~~~~r~r~~~d~~~~~~~~~~-~----a~~i~~D~~~~l~dL~~~~~~~~~~~~~~~~ 546 (660)
++ +|||++| ++++.+.+.++.|++..++ +|+++.+. + +++|++|.||||+||.. .|.|.+. ++
T Consensus 265 ~~---~fei~~y--~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~d~~~a~~i~~d~iDIlidl~g---~t~~~r~--~i 332 (723)
T 4gyw_A 265 PD---KFEVFCY--ALSPDDGTNFRVKVMAEAN--HFIDLSQIPCNGKAADRIHQDGIHILVNMNG---YTKGARN--EL 332 (723)
T ss_dssp TT---TEEEEEE--ESSCCCSCHHHHHHHHHSS--EEEEGGGCCCHHHHHHHHHHTTCSEEEESCS---SBTTCCT--HH
T ss_pred cC---ceeEEEE--EcCCCCccHHHHHHHHhhc--cccccccCCcHHHHHHHHHhccceeEEeccC---CCCCCcc--hh
Confidence 99 9999999 8898888889999999999 66666554 1 78899999999999974 3344442 22
Q ss_pred hcc-CCCcccchhHHhhhccCCCCcchhhhh
Q 006120 547 HGE-ADSSMVSLSEFLVMFDDPDWGFGIMST 576 (660)
Q Consensus 547 ~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~ 576 (660)
..- ..+++|||-+|.-.---+...|.|-..
T Consensus 333 ~a~r~APvQv~~lG~p~TtG~~~iDY~i~D~ 363 (723)
T 4gyw_A 333 FALRPAPIQAMWLGYPGTSGALFMDYIITDQ 363 (723)
T ss_dssp HHTCCSSEEEECSSCSSCCCCTTCCEEEECT
T ss_pred hhcCCCCceeeeccCCCCCCCCcCCEEEeCC
Confidence 222 445555555554433333334444333
No 2
>1w3b_A UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110; OGT, glcnac, nucleoporin, O-linked glycosylation, TPR repeat, protein binding; 2.85A {Homo sapiens} SCOP: a.118.8.1
Probab=99.97 E-value=7.3e-28 Score=256.13 Aligned_cols=297 Identities=21% Similarity=0.225 Sum_probs=216.0
Q ss_pred hhcCCcchhhccCchHHHHhccCchhhHHHHHHHHHHHHhhccCCcCCchHHhhhHHHHHH---------------hCCc
Q 006120 20 KKQRTAAWAVSPNHGIVFDDTWKIVDDLEILVKRLKAKQAKDGKLKGDNSDAFSDAGWSRE---------------LGTS 84 (660)
Q Consensus 20 ~~~~p~~~~~~~~lg~~y~~~~~~~~al~~~~~~~~~a~~~~~~l~~~~~~a~~~~~~~~~---------------l~~~ 84 (660)
.+.+|....++.++|.+|...|++.++++.+.++++ +.|+...++..++.... +...
T Consensus 60 ~~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~--------~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~ 131 (388)
T 1w3b_A 60 IKQNPLLAEAYSNLGNVYKERGQLQEAIEHYRHALR--------LKPDFIDGYINLAAALVAAGDMEGAVQAYVSALQYN 131 (388)
T ss_dssp HHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHH--------HCTTCHHHHHHHHHHHHHHSCSSHHHHHHHHHHHHC
T ss_pred HhcCCCchHHHHHHHHHHHHCCCHHHHHHHHHHHHH--------cCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC
Confidence 455777888888888888888888888888888777 34555444433333221 1112
Q ss_pred hHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHhhccCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHH
Q 006120 85 AEISEKRVFWEESTHDYAVFVKELGVLRNRADGARSREEAFDGHMAIGRVLYEHQLFKEALVSFKRACELQPTDVRPHFR 164 (660)
Q Consensus 85 ~~~~~~~~~l~~~~~~~g~~~~Al~~l~~a~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~ 164 (660)
|.....+..++.++...|++++|+..++++++..+... .++..+|.++...|++++|+..|+++++.+|+...++..
T Consensus 132 p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~---~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~ 208 (388)
T 1w3b_A 132 PDLYCVRSDLGNLLKALGRLEEAKACYLKAIETQPNFA---VAWSNLGCVFNAQGEIWLAIHHFEKAVTLDPNFLDAYIN 208 (388)
T ss_dssp TTCTHHHHHHHHHHHTTSCHHHHHHHHHHHHHHCTTCH---HHHHHHHHHHHTTTCHHHHHHHHHHHHHHCTTCHHHHHH
T ss_pred CCcHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCH---HHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCcHHHHHH
Confidence 33334455566677777777777777777776655443 567777777777777777777777777777777777777
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHHHhccCCCchhchHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCcHHHHHHHHHH
Q 006120 165 AGNCLYVLGRYREAKEEYLLALEAAETGGNQWAYLLPQIYVNLGIALEGEGMVLSACEYYRESAILCPTHFRALKLLGSA 244 (660)
Q Consensus 165 la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~ 244 (660)
+|.++...|++++|+..+++++.+.|+ .+.++..+|.++...|++++|+..|+++++.+|+++.++..+|.+
T Consensus 209 lg~~~~~~~~~~~A~~~~~~al~~~p~--------~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~ 280 (388)
T 1w3b_A 209 LGNVLKEARIFDRAVAAYLRALSLSPN--------HAVVHGNLACVYYEQGLIDLAIDTYRRAIELQPHFPDAYCNLANA 280 (388)
T ss_dssp HHHHHHTTTCTTHHHHHHHHHHHHCTT--------CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTCSSCHHHHHHHHHH
T ss_pred HHHHHHHcCCHHHHHHHHHHHHhhCcC--------CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHH
Confidence 777777777777777777777777776 566777777777777777777777777777777777777777777
Q ss_pred HHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhCCChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCCCHHHH
Q 006120 245 LFGVGEYRAAVKALEEAIFIKPDYADAHCDLASALHAMGEDERAIEVFQKAIDLKPGHVDALYNLGGLYMDLGAGETEEA 324 (660)
Q Consensus 245 ~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~La~~~~~~~~g~~~eA 324 (660)
+...|++++|+..|++++++.|+++.++.++|.++...|++++|+..+++++++.|++..++..+|.++... |++++|
T Consensus 281 ~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~--g~~~~A 358 (388)
T 1w3b_A 281 LKEKGSVAEAEDCYNTALRLCPTHADSLNNLANIKREQGNIEEAVRLYRKALEVFPEFAAAHSNLASVLQQQ--GKLQEA 358 (388)
T ss_dssp HHHHSCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTTTCHHHHHHHHHHHTTSCTTCHHHHHHHHHHHHTT--TCCHHH
T ss_pred HHHcCCHHHHHHHHHHHHhhCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHc--CCHHHH
Confidence 777777777777777777777777777777777777777777777777777777777777777777777776 777777
Q ss_pred HHHHHHHHcccCC
Q 006120 325 KKALKEALKMTNR 337 (660)
Q Consensus 325 ~~~~~~al~l~p~ 337 (660)
+..|+++++++|+
T Consensus 359 ~~~~~~a~~~~p~ 371 (388)
T 1w3b_A 359 LMHYKEAIRISPT 371 (388)
T ss_dssp HHHHHHHHTTCTT
T ss_pred HHHHHHHHhhCCC
Confidence 7777777777765
No 3
>1w3b_A UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110; OGT, glcnac, nucleoporin, O-linked glycosylation, TPR repeat, protein binding; 2.85A {Homo sapiens} SCOP: a.118.8.1
Probab=99.96 E-value=6.8e-28 Score=256.36 Aligned_cols=279 Identities=22% Similarity=0.249 Sum_probs=212.8
Q ss_pred hhhcCCcchhhccCchHHHHhccCchhhHHHHHHHHHHHHhhccCCcCCchHHhhhHHHHHHhCCchHHHHhHHHHHHHH
Q 006120 19 QKKQRTAAWAVSPNHGIVFDDTWKIVDDLEILVKRLKAKQAKDGKLKGDNSDAFSDAGWSRELGTSAEISEKRVFWEEST 98 (660)
Q Consensus 19 ~~~~~p~~~~~~~~lg~~y~~~~~~~~al~~~~~~~~~a~~~~~~l~~~~~~a~~~~~~~~~l~~~~~~~~~~~~l~~~~ 98 (660)
..+.+|....++..+|.++...+++.++...+.++++. .|. ....+..++.++
T Consensus 25 ~~~~~p~~~~~~~~l~~~~~~~~~~~~a~~~~~~a~~~--------~p~-------------------~~~~~~~lg~~~ 77 (388)
T 1w3b_A 25 LWRQEPDNTGVLLLLSSIHFQCRRLDRSAHFSTLAIKQ--------NPL-------------------LAEAYSNLGNVY 77 (388)
T ss_dssp HHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--------CTT-------------------CHHHHHHHHHHH
T ss_pred HHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc--------CCC-------------------chHHHHHHHHHH
Confidence 34457778888888888888888888888777777762 233 234455566777
Q ss_pred HHHHHHHHHHHHHHHHHhhccCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHH
Q 006120 99 HDYAVFVKELGVLRNRADGARSREEAFDGHMAIGRVLYEHQLFKEALVSFKRACELQPTDVRPHFRAGNCLYVLGRYREA 178 (660)
Q Consensus 99 ~~~g~~~~Al~~l~~a~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A 178 (660)
...|++++|+..+++++...|+.. .++..+|.++...|++++|+..|+++++.+|+...++..+|.++...|++++|
T Consensus 78 ~~~g~~~~A~~~~~~al~~~p~~~---~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A 154 (388)
T 1w3b_A 78 KERGQLQEAIEHYRHALRLKPDFI---DGYINLAAALVAAGDMEGAVQAYVSALQYNPDLYCVRSDLGNLLKALGRLEEA 154 (388)
T ss_dssp HHHTCHHHHHHHHHHHHHHCTTCH---HHHHHHHHHHHHHSCSSHHHHHHHHHHHHCTTCTHHHHHHHHHHHTTSCHHHH
T ss_pred HHCCCHHHHHHHHHHHHHcCcchH---HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHccCHHHH
Confidence 777778888888877777665553 56777777777778888888888887777777777777777777777888888
Q ss_pred HHHHHHHHHHhccCCCchhchHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHCCCHHHHHHHH
Q 006120 179 KEEYLLALEAAETGGNQWAYLLPQIYVNLGIALEGEGMVLSACEYYRESAILCPTHFRALKLLGSALFGVGEYRAAVKAL 258 (660)
Q Consensus 179 ~~~~~~al~~~p~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~ 258 (660)
+..|+++++..|. .+.++..+|.++...|++++|+..|+++++++|++..++..+|.++...|++++|+..+
T Consensus 155 ~~~~~~al~~~p~--------~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~ 226 (388)
T 1w3b_A 155 KACYLKAIETQPN--------FAVAWSNLGCVFNAQGEIWLAIHHFEKAVTLDPNFLDAYINLGNVLKEARIFDRAVAAY 226 (388)
T ss_dssp HHHHHHHHHHCTT--------CHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTTTCTTHHHHHH
T ss_pred HHHHHHHHHhCCC--------CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCCHHHHHHHH
Confidence 8888877777776 66777777777777778888888888877777777777777777777777777777777
Q ss_pred HHHHHhCCCCHHHHHHHHHHHHhCCChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHcccCC
Q 006120 259 EEAIFIKPDYADAHCDLASALHAMGEDERAIEVFQKAIDLKPGHVDALYNLGGLYMDLGAGETEEAKKALKEALKMTNR 337 (660)
Q Consensus 259 ~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~La~~~~~~~~g~~~eA~~~~~~al~l~p~ 337 (660)
++++.++|+++.++.++|.++...|++++|+..++++++++|+++.++..+|.++... |++++|+..|++++++.|.
T Consensus 227 ~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~--g~~~~A~~~~~~al~~~p~ 303 (388)
T 1w3b_A 227 LRALSLSPNHAVVHGNLACVYYEQGLIDLAIDTYRRAIELQPHFPDAYCNLANALKEK--GSVAEAEDCYNTALRLCPT 303 (388)
T ss_dssp HHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTCSSCHHHHHHHHHHHHHH--SCHHHHHHHHHHHHHHCTT
T ss_pred HHHHhhCcCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHc--CCHHHHHHHHHHHHhhCcc
Confidence 7777777777777777777777777787787777777777777777777777777777 7777787777777777765
No 4
>3ieg_A DNAJ homolog subfamily C member 3; TPR motif, chaperone, endoplasmic reticulum, TPR repeat, UNF protein response; 2.51A {Mus musculus}
Probab=99.95 E-value=5.4e-25 Score=229.58 Aligned_cols=295 Identities=15% Similarity=0.146 Sum_probs=255.2
Q ss_pred hcCCcchhhccCchHHHHhccCchhhHHHHHHHHHHHHhhccCCcCCchHHhhhHHHHHHhCCchHHHHhHHHHHHHHHH
Q 006120 21 KQRTAAWAVSPNHGIVFDDTWKIVDDLEILVKRLKAKQAKDGKLKGDNSDAFSDAGWSRELGTSAEISEKRVFWEESTHD 100 (660)
Q Consensus 21 ~~~p~~~~~~~~lg~~y~~~~~~~~al~~~~~~~~~a~~~~~~l~~~~~~a~~~~~~~~~l~~~~~~~~~~~~l~~~~~~ 100 (660)
+.+|....++.++|.+|...|++.+++..+.+.++. .|. ....+..++.++..
T Consensus 31 ~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~--------~~~-------------------~~~~~~~l~~~~~~ 83 (359)
T 3ieg_A 31 DGDPDNYIAYYRRATVFLAMGKSKAALPDLTKVIAL--------KMD-------------------FTAARLQRGHLLLK 83 (359)
T ss_dssp HHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH--------CTT-------------------CHHHHHHHHHHHHH
T ss_pred hhCcccHHHHHHHHHHHHHccCHHHHHHHHHHHHHh--------CCC-------------------cchHHHHHHHHHHH
Confidence 457777778888888888888888888888777772 222 23456677889999
Q ss_pred HHHHHHHHHHHHHHHhhccCcHHHHHHHHHH------------HHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHH
Q 006120 101 YAVFVKELGVLRNRADGARSREEAFDGHMAI------------GRVLYEHQLFKEALVSFKRACELQPTDVRPHFRAGNC 168 (660)
Q Consensus 101 ~g~~~~Al~~l~~a~~~~~~~~~~~~~~~~l------------g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~ 168 (660)
.|++++|+..++++++..+.......++..+ |.++...|++++|+..++++++..|.++.++..+|.+
T Consensus 84 ~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~ 163 (359)
T 3ieg_A 84 QGKLDEAEDDFKKVLKSNPSEQEEKEAESQLVKADEMQRLRSQALDAFDGADYTAAITFLDKILEVCVWDAELRELRAEC 163 (359)
T ss_dssp HTCHHHHHHHHHHHHTSCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHH
T ss_pred cCChHHHHHHHHHHHhcCCcccChHHHHHHHHHHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCchHHHHHHHHH
Confidence 9999999999999998877222333445444 8999999999999999999999999999999999999
Q ss_pred HHHcCCHHHHHHHHHHHHHHhccCCCchhchHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCcHHHHH---------
Q 006120 169 LYVLGRYREAKEEYLLALEAAETGGNQWAYLLPQIYVNLGIALEGEGMVLSACEYYRESAILCPTHFRALK--------- 239 (660)
Q Consensus 169 ~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~--------- 239 (660)
+...|++++|+..++++++..|. .+.++..+|.++...|++++|+..++++++..|++..++.
T Consensus 164 ~~~~~~~~~A~~~~~~~~~~~~~--------~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~ 235 (359)
T 3ieg_A 164 FIKEGEPRKAISDLKAASKLKSD--------NTEAFYKISTLYYQLGDHELSLSEVRECLKLDQDHKRCFAHYKQVKKLN 235 (359)
T ss_dssp HHHTTCHHHHHHHHHHHHTTCSC--------CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHH
T ss_pred HHHCCCHHHHHHHHHHHHHhCCC--------CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCccchHHHHHHHHHHHHH
Confidence 99999999999999999999988 7889999999999999999999999999999999987654
Q ss_pred ---HHHHHHHHCCCHHHHHHHHHHHHHhCCCCHH----HHHHHHHHHHhCCChHHHHHHHHHHHHhCCCCHHHHHHHHHH
Q 006120 240 ---LLGSALFGVGEYRAAVKALEEAIFIKPDYAD----AHCDLASALHAMGEDERAIEVFQKAIDLKPGHVDALYNLGGL 312 (660)
Q Consensus 240 ---~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~----~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~La~~ 312 (660)
.+|.++...|++++|+..+++++...|+++. ++..+|.++...|++++|+..++++++.+|+++.++..+|.+
T Consensus 236 ~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~ 315 (359)
T 3ieg_A 236 KLIESAEELIRDGRYTDATSKYESVMKTEPSVAEYTVRSKERICHCFSKDEKPVEAIRICSEVLQMEPDNVNALKDRAEA 315 (359)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHCCSSHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCcccHHHHHHHHHH
Confidence 4488899999999999999999999999874 466799999999999999999999999999999999999999
Q ss_pred HHHhcCCCHHHHHHHHHHHHcccCCh-hHHHHHHHHHHHHH
Q 006120 313 YMDLGAGETEEAKKALKEALKMTNRV-ELHDAVSHLKQLQK 352 (660)
Q Consensus 313 ~~~~~~g~~~eA~~~~~~al~l~p~~-~~~~~~~~l~~l~~ 352 (660)
+... |++++|..+|+++++++|+. .....+..+....+
T Consensus 316 ~~~~--g~~~~A~~~~~~a~~~~p~~~~~~~~l~~~~~~~~ 354 (359)
T 3ieg_A 316 YLIE--EMYDEAIQDYEAAQEHNENDQQIREGLEKAQRLLK 354 (359)
T ss_dssp HHHT--TCHHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHHH
T ss_pred HHHc--CCHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHH
Confidence 9999 99999999999999999974 44555555554443
No 5
>3hym_B Cell division cycle protein 16 homolog; APC, anaphase promoting complex, cell cycle, mitosis, cyclosome, TPR, ubiquitin, ubiquitin ligase, twinning; 2.80A {Homo sapiens}
Probab=99.95 E-value=7.2e-26 Score=233.77 Aligned_cols=281 Identities=12% Similarity=0.064 Sum_probs=252.5
Q ss_pred HhhhcCCcchhhccCchHHHHhccCchhhHHHHHHHHHHHHhhccCCcCCchHHhhhHHHHHHhCCchHHHHhHHHHHHH
Q 006120 18 SQKKQRTAAWAVSPNHGIVFDDTWKIVDDLEILVKRLKAKQAKDGKLKGDNSDAFSDAGWSRELGTSAEISEKRVFWEES 97 (660)
Q Consensus 18 ~~~~~~p~~~~~~~~lg~~y~~~~~~~~al~~~~~~~~~a~~~~~~l~~~~~~a~~~~~~~~~l~~~~~~~~~~~~l~~~ 97 (660)
......+.....+..+|..+...|++.+++..+.+.++. .+... .....++.+
T Consensus 13 ~~~~~~~~~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~--------~p~~~-------------------~~~~~~~~~ 65 (330)
T 3hym_B 13 ESVDGLQENLDVVVSLAERHYYNCDFKMCYKLTSVVMEK--------DPFHA-------------------SCLPVHIGT 65 (330)
T ss_dssp -------CCCTTHHHHHHHHHHTTCHHHHHHHHHHHHHH--------CTTCT-------------------TTHHHHHHH
T ss_pred HHHhhchhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHc--------CCCCh-------------------hhHHHHHHH
Confidence 344456777788889999999999999999999998883 23222 233344667
Q ss_pred HHHHHHHHHHHHHHHHHHhhccCcHHHHHHHHHHHHHHHHcC-CHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHH
Q 006120 98 THDYAVFVKELGVLRNRADGARSREEAFDGHMAIGRVLYEHQ-LFKEALVSFKRACELQPTDVRPHFRAGNCLYVLGRYR 176 (660)
Q Consensus 98 ~~~~g~~~~Al~~l~~a~~~~~~~~~~~~~~~~lg~~~~~~g-~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~ 176 (660)
+...|++.+|+..++++++..+..+ .+++.+|.++...| ++++|+.+|+++++.+|.++.++..+|.++...|+++
T Consensus 66 ~~~~~~~~~A~~~~~~~~~~~~~~~---~~~~~l~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~ 142 (330)
T 3hym_B 66 LVELNKANELFYLSHKLVDLYPSNP---VSWFAVGCYYLMVGHKNEHARRYLSKATTLEKTYGPAWIAYGHSFAVESEHD 142 (330)
T ss_dssp HHHHTCHHHHHHHHHHHHHHCTTST---HHHHHHHHHHHHSCSCHHHHHHHHHHHHTTCTTCTHHHHHHHHHHHHHTCHH
T ss_pred HHHhhhHHHHHHHHHHHHHhCcCCH---HHHHHHHHHHHHhhhhHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHccCHH
Confidence 7889999999999999999877665 78999999999999 9999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHhccCCCchhchHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHCCCHHHHHH
Q 006120 177 EAKEEYLLALEAAETGGNQWAYLLPQIYVNLGIALEGEGMVLSACEYYRESAILCPTHFRALKLLGSALFGVGEYRAAVK 256 (660)
Q Consensus 177 ~A~~~~~~al~~~p~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~ 256 (660)
+|+..++++++..|. ...++..+|.++...|++++|+.+++++++..|+++.++..+|.++...|++++|+.
T Consensus 143 ~A~~~~~~a~~~~~~--------~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~~~~~~~A~~ 214 (330)
T 3hym_B 143 QAMAAYFTAAQLMKG--------CHLPMLYIGLEYGLTNNSKLAERFFSQALSIAPEDPFVMHEVGVVAFQNGEWKTAEK 214 (330)
T ss_dssp HHHHHHHHHHHHTTT--------CSHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHTTCHHHHHH
T ss_pred HHHHHHHHHHHhccc--------cHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHcccHHHHHH
Confidence 999999999999998 557788899999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHhC---------CCCHHHHHHHHHHHHhCCChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCCCHHHHHHH
Q 006120 257 ALEEAIFIK---------PDYADAHCDLASALHAMGEDERAIEVFQKAIDLKPGHVDALYNLGGLYMDLGAGETEEAKKA 327 (660)
Q Consensus 257 ~~~~al~~~---------p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~La~~~~~~~~g~~~eA~~~ 327 (660)
.+++++.+. |..+.++.++|.++...|++++|+.+++++++++|+++.++..+|.++... |++++|..+
T Consensus 215 ~~~~a~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~--g~~~~A~~~ 292 (330)
T 3hym_B 215 WFLDALEKIKAIGNEVTVDKWEPLLNNLGHVCRKLKKYAEALDYHRQALVLIPQNASTYSAIGYIHSLM--GNFENAVDY 292 (330)
T ss_dssp HHHHHHHHHTTTSCSCTTTTCCHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCSHHHHHHHHHHHHH--TCHHHHHHH
T ss_pred HHHHHHHHhhhccccccccHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHhhCccchHHHHHHHHHHHHh--ccHHHHHHH
Confidence 999999986 667889999999999999999999999999999999999999999999999 999999999
Q ss_pred HHHHHcccCCh
Q 006120 328 LKEALKMTNRV 338 (660)
Q Consensus 328 ~~~al~l~p~~ 338 (660)
++++++++|+.
T Consensus 293 ~~~al~~~p~~ 303 (330)
T 3hym_B 293 FHTALGLRRDD 303 (330)
T ss_dssp HHTTTTTCSCC
T ss_pred HHHHHccCCCc
Confidence 99999999874
No 6
>2y4t_A DNAJ homolog subfamily C member 3; chaperone, endoplasmic reticulum, protein folding, tetratricopeptiderepeat, J domain, unfolded protein respons; 3.00A {Homo sapiens} PDB: 2y4u_A
Probab=99.95 E-value=4.4e-25 Score=238.94 Aligned_cols=319 Identities=14% Similarity=0.119 Sum_probs=269.2
Q ss_pred hHhhhcCCcchhhccCchHHHHhccCchhhHHHHHHHHHHHHhhccCCcCCchHHhhhHHHHHHh---------------
Q 006120 17 ESQKKQRTAAWAVSPNHGIVFDDTWKIVDDLEILVKRLKAKQAKDGKLKGDNSDAFSDAGWSREL--------------- 81 (660)
Q Consensus 17 ~~~~~~~p~~~~~~~~lg~~y~~~~~~~~al~~~~~~~~~a~~~~~~l~~~~~~a~~~~~~~~~l--------------- 81 (660)
...-..+|....++..+|..|...|++.+++..+.+.++. .+....++..++.....
T Consensus 16 ~~~~~~~p~~~~~~~~~~~~~~~~g~~~~A~~~~~~~l~~--------~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al 87 (450)
T 2y4t_A 16 ENLYFQSMADVEKHLELGKKLLAAGQLADALSQFHAAVDG--------DPDNYIAYYRRATVFLAMGKSKAALPDLTKVI 87 (450)
T ss_dssp -------CHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--------CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred cccccccHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh--------CCccHHHHHHHHHHHHHCCCHHHHHHHHHHHH
Confidence 3344568888888999999999999999999999888873 44444444444333211
Q ss_pred CCchHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHhhccCcHHHHHH------------HHHHHHHHHHcCCHHHHHHHHH
Q 006120 82 GTSAEISEKRVFWEESTHDYAVFVKELGVLRNRADGARSREEAFDG------------HMAIGRVLYEHQLFKEALVSFK 149 (660)
Q Consensus 82 ~~~~~~~~~~~~l~~~~~~~g~~~~Al~~l~~a~~~~~~~~~~~~~------------~~~lg~~~~~~g~~~~A~~~~~ 149 (660)
...+.....+..++.++...|++++|+..++++++..+.......+ ++.+|..+...|++++|+..|+
T Consensus 88 ~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~ 167 (450)
T 2y4t_A 88 QLKMDFTAARLQRGHLLLKQGKLDEAEDDFKKVLKSNPSENEEKEAQSQLIKSDEMQRLRSQALNAFGSGDYTAAIAFLD 167 (450)
T ss_dssp HHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTSCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHH
T ss_pred hcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHH
Confidence 1233445677788999999999999999999999988776522122 3455888999999999999999
Q ss_pred HHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhccCCCchhchHHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Q 006120 150 RACELQPTDVRPHFRAGNCLYVLGRYREAKEEYLLALEAAETGGNQWAYLLPQIYVNLGIALEGEGMVLSACEYYRESAI 229 (660)
Q Consensus 150 ~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~ 229 (660)
++++..|.++.++..+|.++...|++++|+..++++++..|. .+.++..+|.++...|++++|+..+++++.
T Consensus 168 ~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~--------~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 239 (450)
T 2y4t_A 168 KILEVCVWDAELRELRAECFIKEGEPRKAISDLKAASKLKND--------NTEAFYKISTLYYQLGDHELSLSEVRECLK 239 (450)
T ss_dssp HHHHHCTTCHHHHHHHHHHHHHTTCGGGGHHHHHHHHHHHCS--------CHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHhCCCChHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCC--------CHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 999999999999999999999999999999999999999998 789999999999999999999999999999
Q ss_pred hCCCcHHHHHHH------------HHHHHHCCCHHHHHHHHHHHHHhCCCCH----HHHHHHHHHHHhCCChHHHHHHHH
Q 006120 230 LCPTHFRALKLL------------GSALFGVGEYRAAVKALEEAIFIKPDYA----DAHCDLASALHAMGEDERAIEVFQ 293 (660)
Q Consensus 230 ~~p~~~~~~~~l------------g~~~~~~g~~~~A~~~~~~al~~~p~~~----~~~~~la~~~~~~g~~~~A~~~~~ 293 (660)
..|++...+..+ |.++...|++++|+..|++++++.|+++ ..+..+|.++...|++++|+..++
T Consensus 240 ~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~ 319 (450)
T 2y4t_A 240 LDQDHKRCFAHYKQVKKLNKLIESAEELIRDGRYTDATSKYESVMKTEPSIAEYTVRSKERICHCFSKDEKPVEAIRVCS 319 (450)
T ss_dssp HCTTCHHHHHHHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCCSSHHHHHHHHHHHHHHHHTTTCHHHHHHHHH
T ss_pred hCCChHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHHHCCCHHHHHHHHH
Confidence 999998887766 9999999999999999999999999985 478999999999999999999999
Q ss_pred HHHHhCCCCHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHcccCC-hhHHHHHHHHHHHHHH
Q 006120 294 KAIDLKPGHVDALYNLGGLYMDLGAGETEEAKKALKEALKMTNR-VELHDAVSHLKQLQKK 353 (660)
Q Consensus 294 ~al~~~p~~~~a~~~La~~~~~~~~g~~~eA~~~~~~al~l~p~-~~~~~~~~~l~~l~~~ 353 (660)
++++++|+++.++..+|.++... |++++|+..|++++++.|+ ......+..+....+.
T Consensus 320 ~a~~~~p~~~~~~~~l~~~~~~~--~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~ 378 (450)
T 2y4t_A 320 EVLQMEPDNVNALKDRAEAYLIE--EMYDEAIQDYETAQEHNENDQQIREGLEKAQRLLKQ 378 (450)
T ss_dssp HHHHHCTTCHHHHHHHHHHHHHT--TCHHHHHHHHHHHHTTSSSCHHHHHHHHHHHHHHHH
T ss_pred HHHHhCcccHHHHHHHHHHHHHh--cCHHHHHHHHHHHHHhCcchHHHHHHHHHHHHHhhc
Confidence 99999999999999999999999 9999999999999999997 4455566655555444
No 7
>3ieg_A DNAJ homolog subfamily C member 3; TPR motif, chaperone, endoplasmic reticulum, TPR repeat, UNF protein response; 2.51A {Mus musculus}
Probab=99.94 E-value=5.9e-25 Score=229.34 Aligned_cols=304 Identities=13% Similarity=0.067 Sum_probs=265.0
Q ss_pred chhhccCchHHHHhccCchhhHHHHHHHHHHHHhhccCCcCCchHHhhhHHHHHHhCCchHHHHhHHHHHHHHHHHHHHH
Q 006120 26 AWAVSPNHGIVFDDTWKIVDDLEILVKRLKAKQAKDGKLKGDNSDAFSDAGWSRELGTSAEISEKRVFWEESTHDYAVFV 105 (660)
Q Consensus 26 ~~~~~~~lg~~y~~~~~~~~al~~~~~~~~~a~~~~~~l~~~~~~a~~~~~~~~~l~~~~~~~~~~~~l~~~~~~~g~~~ 105 (660)
+...+..+|..+...|++.+++..+.+.++. .|.. ...+..++.++...|++.
T Consensus 2 ~~~~~~~~~~~~~~~g~~~~A~~~~~~~l~~--------~p~~-------------------~~~~~~~a~~~~~~~~~~ 54 (359)
T 3ieg_A 2 DVEKHLELGKKLLAAGQLADALSQFHAAVDG--------DPDN-------------------YIAYYRRATVFLAMGKSK 54 (359)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--------CTTC-------------------HHHHHHHHHHHHHHTCHH
T ss_pred cHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh--------Cccc-------------------HHHHHHHHHHHHHccCHH
Confidence 3456788999999999999999999999983 3332 345566788899999999
Q ss_pred HHHHHHHHHHhhccCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC---CCHHHHHHH------------HHHHH
Q 006120 106 KELGVLRNRADGARSREEAFDGHMAIGRVLYEHQLFKEALVSFKRACELQP---TDVRPHFRA------------GNCLY 170 (660)
Q Consensus 106 ~Al~~l~~a~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p---~~~~~~~~l------------a~~~~ 170 (660)
+|+..++++++..+... .++..+|.++...|++++|+..|+++++..| ++..++..+ |.++.
T Consensus 55 ~A~~~~~~~~~~~~~~~---~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~ 131 (359)
T 3ieg_A 55 AALPDLTKVIALKMDFT---AARLQRGHLLLKQGKLDEAEDDFKKVLKSNPSEQEEKEAESQLVKADEMQRLRSQALDAF 131 (359)
T ss_dssp HHHHHHHHHHHHCTTCH---HHHHHHHHHHHHHTCHHHHHHHHHHHHTSCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhCCCcc---hHHHHHHHHHHHcCChHHHHHHHHHHHhcCCcccChHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999877665 7899999999999999999999999999999 888888777 79999
Q ss_pred HcCCHHHHHHHHHHHHHHhccCCCchhchHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHCCC
Q 006120 171 VLGRYREAKEEYLLALEAAETGGNQWAYLLPQIYVNLGIALEGEGMVLSACEYYRESAILCPTHFRALKLLGSALFGVGE 250 (660)
Q Consensus 171 ~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~ 250 (660)
..|++++|+..++++++..|. .+.++..+|.++...|++++|+..+++++...|.++.++..+|.++...|+
T Consensus 132 ~~~~~~~A~~~~~~~~~~~~~--------~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~ 203 (359)
T 3ieg_A 132 DGADYTAAITFLDKILEVCVW--------DAELRELRAECFIKEGEPRKAISDLKAASKLKSDNTEAFYKISTLYYQLGD 203 (359)
T ss_dssp HTTCHHHHHHHHHHHHHHCTT--------CHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCSCCHHHHHHHHHHHHHHTC
T ss_pred HccCHHHHHHHHHHHHHhCCC--------chHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCC
Confidence 999999999999999999998 778999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHhCCCCHHHHH------------HHHHHHHhCCChHHHHHHHHHHHHhCCCCHH----HHHHHHHHHH
Q 006120 251 YRAAVKALEEAIFIKPDYADAHC------------DLASALHAMGEDERAIEVFQKAIDLKPGHVD----ALYNLGGLYM 314 (660)
Q Consensus 251 ~~~A~~~~~~al~~~p~~~~~~~------------~la~~~~~~g~~~~A~~~~~~al~~~p~~~~----a~~~La~~~~ 314 (660)
+++|+..++++++..|++..++. .+|.++...|++++|+..++++++..|+++. ++..+|.++.
T Consensus 204 ~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~la~~~~ 283 (359)
T 3ieg_A 204 HELSLSEVRECLKLDQDHKRCFAHYKQVKKLNKLIESAEELIRDGRYTDATSKYESVMKTEPSVAEYTVRSKERICHCFS 283 (359)
T ss_dssp HHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCSSHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhhCccchHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHH
Confidence 99999999999999999988665 4488899999999999999999999999874 4667999999
Q ss_pred HhcCCCHHHHHHHHHHHHcccCCh-hHHHHHHHHHHHHHHhccCCCCCCCCCCccccCcchHHhhchhhhhhhhHHHHhc
Q 006120 315 DLGAGETEEAKKALKEALKMTNRV-ELHDAVSHLKQLQKKKSKGNRGTNGEGGFDIVEPSKFKTVGERTTVRQDLANALE 393 (660)
Q Consensus 315 ~~~~g~~~eA~~~~~~al~l~p~~-~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~al~ 393 (660)
.. |++++|+..+++++++.|+. .....+ +..+...|+...+...+..++.
T Consensus 284 ~~--~~~~~A~~~~~~~~~~~~~~~~~~~~~---------------------------~~~~~~~g~~~~A~~~~~~a~~ 334 (359)
T 3ieg_A 284 KD--EKPVEAIRICSEVLQMEPDNVNALKDR---------------------------AEAYLIEEMYDEAIQDYEAAQE 334 (359)
T ss_dssp HT--TCHHHHHHHHHHHHHHCTTCHHHHHHH---------------------------HHHHHHTTCHHHHHHHHHHHHT
T ss_pred Hc--cCHHHHHHHHHHHHHhCcccHHHHHHH---------------------------HHHHHHcCCHHHHHHHHHHHHh
Confidence 98 99999999999999998863 222222 2234445666777777777776
Q ss_pred CHH
Q 006120 394 IRA 396 (660)
Q Consensus 394 ~~~ 396 (660)
+.+
T Consensus 335 ~~p 337 (359)
T 3ieg_A 335 HNE 337 (359)
T ss_dssp TCT
T ss_pred cCC
Confidence 553
No 8
>4eqf_A PEX5-related protein; accessory protein, tetratricopeptide repeat, TPR; 3.00A {Mus musculus}
Probab=99.94 E-value=6.2e-25 Score=231.28 Aligned_cols=245 Identities=17% Similarity=0.183 Sum_probs=217.5
Q ss_pred HHhHHHHHHHHHHHHHHHHHHHHHHHHHhhccCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHH
Q 006120 88 SEKRVFWEESTHDYAVFVKELGVLRNRADGARSREEAFDGHMAIGRVLYEHQLFKEALVSFKRACELQPTDVRPHFRAGN 167 (660)
Q Consensus 88 ~~~~~~l~~~~~~~g~~~~Al~~l~~a~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~ 167 (660)
...+..++..+...|++.+|+..++++++..+... .+++.+|.++...|++++|+..|+++++.+|+++.++..+|.
T Consensus 65 ~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~p~~~---~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~ 141 (365)
T 4eqf_A 65 WPGAFEEGLKRLKEGDLPVTILFMEAAILQDPGDA---EAWQFLGITQAENENEQAAIVALQRCLELQPNNLKALMALAV 141 (365)
T ss_dssp CTTHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCH---HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHH
T ss_pred hhHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcCCH---HHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCCHHHHHHHHH
Confidence 34567778999999999999999999999887664 789999999999999999999999999999999999999999
Q ss_pred HHHHcCCHHHHHHHHHHHHHHhccCCCchhch--HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCC--cHHHHHHHHH
Q 006120 168 CLYVLGRYREAKEEYLLALEAAETGGNQWAYL--LPQIYVNLGIALEGEGMVLSACEYYRESAILCPT--HFRALKLLGS 243 (660)
Q Consensus 168 ~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~--~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~--~~~~~~~lg~ 243 (660)
++...|++++|+..+++++++.|.....+... ....+..+|.++...|++++|+.+++++++..|+ ++.++..+|.
T Consensus 142 ~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~l~~ 221 (365)
T 4eqf_A 142 SYTNTSHQQDACEALKNWIKQNPKYKYLVKNKKGSPGLTRRMSKSPVDSSVLEGVKELYLEAAHQNGDMIDPDLQTGLGV 221 (365)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHCHHHHCC-------------------CCHHHHHHHHHHHHHHHHSCSSCCHHHHHHHHH
T ss_pred HHHccccHHHHHHHHHHHHHhCccchHHHhhhccchHHHHHHHHHHhhhhhHHHHHHHHHHHHHhCcCccCHHHHHHHHH
Confidence 99999999999999999999998843332211 2344556799999999999999999999999999 8999999999
Q ss_pred HHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhCCChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCCCHHH
Q 006120 244 ALFGVGEYRAAVKALEEAIFIKPDYADAHCDLASALHAMGEDERAIEVFQKAIDLKPGHVDALYNLGGLYMDLGAGETEE 323 (660)
Q Consensus 244 ~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~La~~~~~~~~g~~~e 323 (660)
++...|++++|+..|++++++.|+++.+|.++|.++...|++++|+..|+++++++|+++.++..+|.++..+ |++++
T Consensus 222 ~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~--g~~~~ 299 (365)
T 4eqf_A 222 LFHLSGEFNRAIDAFNAALTVRPEDYSLWNRLGATLANGDRSEEAVEAYTRALEIQPGFIRSRYNLGISCINL--GAYRE 299 (365)
T ss_dssp HHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHH--TCCHH
T ss_pred HHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHC--CCHHH
Confidence 9999999999999999999999999999999999999999999999999999999999999999999999999 99999
Q ss_pred HHHHHHHHHcccCC
Q 006120 324 AKKALKEALKMTNR 337 (660)
Q Consensus 324 A~~~~~~al~l~p~ 337 (660)
|+.+|++++++.|+
T Consensus 300 A~~~~~~al~~~~~ 313 (365)
T 4eqf_A 300 AVSNFLTALSLQRK 313 (365)
T ss_dssp HHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHhCcc
Confidence 99999999999876
No 9
>2pl2_A Hypothetical conserved protein TTC0263; TPR, protein binding; 2.50A {Thermus thermophilus}
Probab=99.94 E-value=3.1e-25 Score=216.42 Aligned_cols=197 Identities=21% Similarity=0.224 Sum_probs=178.8
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhccCCCchhchHHHHH
Q 006120 125 FDGHMAIGRVLYEHQLFKEALVSFKRACELQPTDVRPHFRAGNCLYVLGRYREAKEEYLLALEAAETGGNQWAYLLPQIY 204 (660)
Q Consensus 125 ~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~ 204 (660)
..+++.+|.++...|++++|+..|+++++.+|+++.++..+|.++...|++++|+..++++++++|+ .+.++
T Consensus 5 ~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~~~P~--------~~~a~ 76 (217)
T 2pl2_A 5 EQNPLRLGVQLYALGRYDAALTLFERALKENPQDPEALYWLARTQLKLGLVNPALENGKTLVARTPR--------YLGGY 76 (217)
T ss_dssp CHHHHHHHHHHHHTTCHHHHHHHHHHHHTTSSSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT--------CHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC--------cHHHH
Confidence 4788999999999999999999999999999999999999999999999999999999999999999 78999
Q ss_pred HHHHHHHHHC-----------CCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHH
Q 006120 205 VNLGIALEGE-----------GMVLSACEYYRESAILCPTHFRALKLLGSALFGVGEYRAAVKALEEAIFIKPDYADAHC 273 (660)
Q Consensus 205 ~~la~~~~~~-----------g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~ 273 (660)
.++|.++... |++++|+..++++++++|+++.++.++|.++...|++++|+..|+++++++ +++.++.
T Consensus 77 ~~lg~~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~P~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-~~~~~~~ 155 (217)
T 2pl2_A 77 MVLSEAYVALYRQAEDRERGKGYLEQALSVLKDAERVNPRYAPLHLQRGLVYALLGERDKAEASLKQALALE-DTPEIRS 155 (217)
T ss_dssp HHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-CCHHHHH
T ss_pred HHHHHHHHHhhhhhhhhcccccCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHcCChHHHHHHHHHHHhcc-cchHHHH
Confidence 9999999999 999999999999999999999999999999999999999999999999999 9999999
Q ss_pred HHHHHHHhCCChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCCCHHHHHHHHHHHH
Q 006120 274 DLASALHAMGEDERAIEVFQKAIDLKPGHVDALYNLGGLYMDLGAGETEEAKKALKEAL 332 (660)
Q Consensus 274 ~la~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~La~~~~~~~~g~~~eA~~~~~~al 332 (660)
++|.++..+|++++|+..|+++++++|+++.++..+|.++... |++++|+..|+++-
T Consensus 156 ~la~~~~~~g~~~~A~~~~~~al~~~P~~~~~~~~la~~~~~~--g~~~~A~~~~~~~~ 212 (217)
T 2pl2_A 156 ALAELYLSMGRLDEALAQYAKALEQAPKDLDLRVRYASALLLK--GKAEEAARAAALEH 212 (217)
T ss_dssp HHHHHHHHHTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHTC-----------------
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHc--cCHHHHHHHHHHHh
Confidence 9999999999999999999999999999999999999999998 99999999998864
No 10
>2h6f_A Protein farnesyltransferase/geranylgeranyltransferase type I alpha subunit; ftase, farnesyltransferase, farnesyl transferase, prenyltransferase, CAAX, RAS, lipid modification, prenylation; HET: SUC FAR; 1.50A {Homo sapiens} SCOP: a.118.6.1 PDB: 1jcq_A* 1ld7_A* 1mzc_A* 1s63_A* 1sa4_A* 1tn6_A* 1ld8_A* 2h6g_A* 2h6h_A* 2h6i_A* 2iej_A* 3e37_A* 2f0y_A* 3ksl_A* 2zir_A* 2zis_A* 1o5m_A* 3ksq_A* 1o1t_A* 1o1s_A* ...
Probab=99.93 E-value=1.6e-24 Score=229.13 Aligned_cols=244 Identities=11% Similarity=-0.027 Sum_probs=229.0
Q ss_pred hCCchHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHhhccCcHHHHHHHHHHHHHHHHcCC-HHHHHHHHHHHHHhCCCCH
Q 006120 81 LGTSAEISEKRVFWEESTHDYAVFVKELGVLRNRADGARSREEAFDGHMAIGRVLYEHQL-FKEALVSFKRACELQPTDV 159 (660)
Q Consensus 81 l~~~~~~~~~~~~l~~~~~~~g~~~~Al~~l~~a~~~~~~~~~~~~~~~~lg~~~~~~g~-~~~A~~~~~~al~~~p~~~ 159 (660)
+...+....++..++.++...|++++|+..+++++...+... .+|+.+|.++...|+ +++|+..|+++++++|++.
T Consensus 90 i~~~p~~~~a~~~lg~~~~~~g~~~~Al~~~~~al~l~P~~~---~a~~~~g~~l~~~g~d~~eAl~~~~~al~l~P~~~ 166 (382)
T 2h6f_A 90 IIYSDKFRDVYDYFRAVLQRDERSERAFKLTRDAIELNAANY---TVWHFRRVLLKSLQKDLHEEMNYITAIIEEQPKNY 166 (382)
T ss_dssp ECCCHHHHHHHHHHHHHHHHTCCCHHHHHHHHHHHHHCTTCH---HHHHHHHHHHHHTTCCHHHHHHHHHHHHHHCTTCH
T ss_pred hhCChhhHHHHHHHHHHHHHCCChHHHHHHHHHHHHhCccCH---HHHHHHHHHHHHcccCHHHHHHHHHHHHHHCCCCH
Confidence 356778888899999999999999999999999999888775 889999999999997 9999999999999999999
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHhccCCCchhchHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCcHHHHH
Q 006120 160 RPHFRAGNCLYVLGRYREAKEEYLLALEAAETGGNQWAYLLPQIYVNLGIALEGEGMVLSACEYYRESAILCPTHFRALK 239 (660)
Q Consensus 160 ~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~ 239 (660)
.+|+++|.++..+|++++|+..|+++++++|. ...+|.++|.++..+|++++|+.+|+++++++|++..+|+
T Consensus 167 ~a~~~~g~~~~~~g~~~eAl~~~~kal~ldP~--------~~~a~~~lg~~~~~~g~~~eAl~~~~~al~l~P~~~~a~~ 238 (382)
T 2h6f_A 167 QVWHHRRVLVEWLRDPSQELEFIADILNQDAK--------NYHAWQHRQWVIQEFKLWDNELQYVDQLLKEDVRNNSVWN 238 (382)
T ss_dssp HHHHHHHHHHHHHTCCTTHHHHHHHHHHHCTT--------CHHHHHHHHHHHHHHTCCTTHHHHHHHHHHHCTTCHHHHH
T ss_pred HHHHHHHHHHHHccCHHHHHHHHHHHHHhCcc--------CHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCCHHHHH
Confidence 99999999999999999999999999999999 8899999999999999999999999999999999999999
Q ss_pred HHHHHHHH-CCCHHHH-----HHHHHHHHHhCCCCHHHHHHHHHHHHhCC--ChHHHHHHHHHHHHhCCCCHHHHHHHHH
Q 006120 240 LLGSALFG-VGEYRAA-----VKALEEAIFIKPDYADAHCDLASALHAMG--EDERAIEVFQKAIDLKPGHVDALYNLGG 311 (660)
Q Consensus 240 ~lg~~~~~-~g~~~~A-----~~~~~~al~~~p~~~~~~~~la~~~~~~g--~~~~A~~~~~~al~~~p~~~~a~~~La~ 311 (660)
++|.++.. .|.+++| +.+|++++.++|++..+|+++|.++...| ++++|+..++++ +.+|+++.++..+|.
T Consensus 239 ~lg~~l~~l~~~~~eA~~~~el~~~~~Al~l~P~~~~a~~~l~~ll~~~g~~~~~~a~~~~~~~-~~~p~~~~al~~La~ 317 (382)
T 2h6f_A 239 QRYFVISNTTGYNDRAVLEREVQYTLEMIKLVPHNESAWNYLKGILQDRGLSKYPNLLNQLLDL-QPSHSSPYLIAFLVD 317 (382)
T ss_dssp HHHHHHHHTTCSCSHHHHHHHHHHHHHHHHHSTTCHHHHHHHHHHHTTTCGGGCHHHHHHHHHH-TTTCCCHHHHHHHHH
T ss_pred HHHHHHHHhcCcchHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHccCccchHHHHHHHHHh-ccCCCCHHHHHHHHH
Confidence 99999999 5665777 59999999999999999999999999988 799999999998 999999999999999
Q ss_pred HHHHhcCC---------CHHHHHHHHHHH-HcccCCh
Q 006120 312 LYMDLGAG---------ETEEAKKALKEA-LKMTNRV 338 (660)
Q Consensus 312 ~~~~~~~g---------~~~eA~~~~~~a-l~l~p~~ 338 (660)
+|..+ | .+++|+.+|+++ ++++|..
T Consensus 318 ~~~~~--~~~~~~~~~~~~~~A~~~~~~l~~~~DP~r 352 (382)
T 2h6f_A 318 IYEDM--LENQCDNKEDILNKALELCEILAKEKDTIR 352 (382)
T ss_dssp HHHHH--HHTTCSSHHHHHHHHHHHHHHHHHTTCGGG
T ss_pred HHHHH--hcccccchHHHHHHHHHHHHHHHHHhCchh
Confidence 99987 4 359999999999 9999863
No 11
>2xpi_A Anaphase-promoting complex subunit CUT9; cell cycle, TPR, ubiquitin ligase; 2.60A {Schizosaccharomyces pombe}
Probab=99.93 E-value=1.1e-23 Score=236.70 Aligned_cols=275 Identities=17% Similarity=0.152 Sum_probs=249.8
Q ss_pred CcchhhccCchHHHHhccCchhhHHHHHHHHHHHHhhccCCcCCchHHhhhHHHHHHhCCchHHHHhHHHHHHHHHHHHH
Q 006120 24 TAAWAVSPNHGIVFDDTWKIVDDLEILVKRLKAKQAKDGKLKGDNSDAFSDAGWSRELGTSAEISEKRVFWEESTHDYAV 103 (660)
Q Consensus 24 p~~~~~~~~lg~~y~~~~~~~~al~~~~~~~~~a~~~~~~l~~~~~~a~~~~~~~~~l~~~~~~~~~~~~l~~~~~~~g~ 103 (660)
|....++..+|..|.+.|++.++++.+.+.++. .+.. ...+..++.++...|+
T Consensus 302 ~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~--------~~~~-------------------~~~~~~l~~~~~~~g~ 354 (597)
T 2xpi_A 302 EKSSDLLLCKADTLFVRSRFIDVLAITTKILEI--------DPYN-------------------LDVYPLHLASLHESGE 354 (597)
T ss_dssp GGCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--------CTTC-------------------CTTHHHHHHHHHHHTC
T ss_pred CchHHHHHHHHHHHHHhcCHHHHHHHHHHHHHc--------Cccc-------------------HHHHHHHHHHHHHhCC
Confidence 567777888888888888888888888887763 2221 2234455777889999
Q ss_pred HHHHHHHHHHHHhhccCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHH
Q 006120 104 FVKELGVLRNRADGARSREEAFDGHMAIGRVLYEHQLFKEALVSFKRACELQPTDVRPHFRAGNCLYVLGRYREAKEEYL 183 (660)
Q Consensus 104 ~~~Al~~l~~a~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~ 183 (660)
+++|+..++++++..+.. ..++..+|.++...|++++|+.+|+++++..|.+..++..+|.++...|++++|++.|+
T Consensus 355 ~~~A~~~~~~~~~~~~~~---~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~ 431 (597)
T 2xpi_A 355 KNKLYLISNDLVDRHPEK---AVTWLAVGIYYLCVNKISEARRYFSKSSTMDPQFGPAWIGFAHSFAIEGEHDQAISAYT 431 (597)
T ss_dssp HHHHHHHHHHHHHHCTTS---HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHH
T ss_pred HHHHHHHHHHHHhhCccc---HHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHH
Confidence 999999999999776655 47889999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHhccCCCchhchHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Q 006120 184 LALEAAETGGNQWAYLLPQIYVNLGIALEGEGMVLSACEYYRESAILCPTHFRALKLLGSALFGVGEYRAAVKALEEAIF 263 (660)
Q Consensus 184 ~al~~~p~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~ 263 (660)
++++..|. ...++..+|.++...|++++|+.+|+++++..|.++.++..+|.++...|++++|+..|+++++
T Consensus 432 ~~~~~~~~--------~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 503 (597)
T 2xpi_A 432 TAARLFQG--------THLPYLFLGMQHMQLGNILLANEYLQSSYALFQYDPLLLNELGVVAFNKSDMQTAINHFQNALL 503 (597)
T ss_dssp HHHHTTTT--------CSHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHhCcc--------chHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHhCCHHHHHHHHHHHHH
Confidence 99999987 5688899999999999999999999999999999999999999999999999999999999999
Q ss_pred h------CCCC-HHHHHHHHHHHHhCCChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHcccC
Q 006120 264 I------KPDY-ADAHCDLASALHAMGEDERAIEVFQKAIDLKPGHVDALYNLGGLYMDLGAGETEEAKKALKEALKMTN 336 (660)
Q Consensus 264 ~------~p~~-~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~La~~~~~~~~g~~~eA~~~~~~al~l~p 336 (660)
+ +|+. ..+|..+|.++...|++++|+..++++++.+|+++.++..++.+|... |++++|..+|+++++++|
T Consensus 504 ~~~~~~~~p~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~--g~~~~A~~~~~~~l~~~p 581 (597)
T 2xpi_A 504 LVKKTQSNEKPWAATWANLGHAYRKLKMYDAAIDALNQGLLLSTNDANVHTAIALVYLHK--KIPGLAITHLHESLAISP 581 (597)
T ss_dssp HHHHSCCCSGGGHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSSCCHHHHHHHHHHHHHT--TCHHHHHHHHHHHHHHCT
T ss_pred hhhccccchhhHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHh--CCHHHHHHHHHHHHhcCC
Confidence 8 5664 789999999999999999999999999999999999999999999999 999999999999999999
Q ss_pred Ch
Q 006120 337 RV 338 (660)
Q Consensus 337 ~~ 338 (660)
+.
T Consensus 582 ~~ 583 (597)
T 2xpi_A 582 NE 583 (597)
T ss_dssp TC
T ss_pred CC
Confidence 74
No 12
>1fch_A Peroxisomal targeting signal 1 receptor; protein-peptide complex, tetratricopeptide repeat, TPR, helical repeat, signaling protein; 2.20A {Homo sapiens} SCOP: a.118.8.1 PDB: 2j9q_A 3imz_B* 3r9a_B* 2c0m_A 2c0l_A
Probab=99.93 E-value=1.8e-24 Score=227.38 Aligned_cols=244 Identities=20% Similarity=0.203 Sum_probs=220.6
Q ss_pred HhHHHHHHHHHHHHHHHHHHHHHHHHHhhccCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHH
Q 006120 89 EKRVFWEESTHDYAVFVKELGVLRNRADGARSREEAFDGHMAIGRVLYEHQLFKEALVSFKRACELQPTDVRPHFRAGNC 168 (660)
Q Consensus 89 ~~~~~l~~~~~~~g~~~~Al~~l~~a~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~ 168 (660)
..+..++..+...|++.+|+..++++++..+... .++..+|.++...|++++|+..|+++++.+|+++.++..+|.+
T Consensus 65 ~~~~~~~~~~~~~g~~~~A~~~~~~al~~~p~~~---~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~l~~~ 141 (368)
T 1fch_A 65 PQPFEEGLRRLQEGDLPNAVLLFEAAVQQDPKHM---EAWQYLGTTQAENEQELLAISALRRCLELKPDNQTALMALAVS 141 (368)
T ss_dssp SSHHHHHHHHHHTTCHHHHHHHHHHHHHSCTTCH---HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCH---HHHHHHHHHHHHCcCHHHHHHHHHHHHhcCCCCHHHHHHHHHH
Confidence 3455668889999999999999999999877654 7899999999999999999999999999999999999999999
Q ss_pred HHHcCCHHHHHHHHHHHHHHhccCCCchhch--------HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCC--cHHHH
Q 006120 169 LYVLGRYREAKEEYLLALEAAETGGNQWAYL--------LPQIYVNLGIALEGEGMVLSACEYYRESAILCPT--HFRAL 238 (660)
Q Consensus 169 ~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~--------~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~--~~~~~ 238 (660)
+...|++++|+..+++++...|.....+... ....+..++.++ ..|++++|+.++++++...|. ++.++
T Consensus 142 ~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~A~~~~~~a~~~~p~~~~~~~~ 220 (368)
T 1fch_A 142 FTNESLQRQACEILRDWLRYTPAYAHLVTPAEEGAGGAGLGPSKRILGSLL-SDSLFLEVKELFLAAVRLDPTSIDPDVQ 220 (368)
T ss_dssp HHHTTCHHHHHHHHHHHHHTSTTTGGGCC---------------CTTHHHH-HHHHHHHHHHHHHHHHHHSTTSCCHHHH
T ss_pred HHHcCCHHHHHHHHHHHHHhCcCcHHHHHHHHHHhhhhcccHHHHHHHHHh-hcccHHHHHHHHHHHHHhCcCcccHHHH
Confidence 9999999999999999999998854433210 111222566666 899999999999999999999 89999
Q ss_pred HHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhCCChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcC
Q 006120 239 KLLGSALFGVGEYRAAVKALEEAIFIKPDYADAHCDLASALHAMGEDERAIEVFQKAIDLKPGHVDALYNLGGLYMDLGA 318 (660)
Q Consensus 239 ~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~La~~~~~~~~ 318 (660)
..+|.++...|++++|+..+++++.+.|+++.++.++|.++...|++++|+..++++++++|+++.++..+|.++...
T Consensus 221 ~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~~-- 298 (368)
T 1fch_A 221 CGLGVLFNLSGEYDKAVDCFTAALSVRPNDYLLWNKLGATLANGNQSEEAVAAYRRALELQPGYIRSRYNLGISCINL-- 298 (368)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHH--
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHhCcCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHC--
Confidence 999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCHHHHHHHHHHHHcccCCh
Q 006120 319 GETEEAKKALKEALKMTNRV 338 (660)
Q Consensus 319 g~~~eA~~~~~~al~l~p~~ 338 (660)
|++++|+.+|++++++.|+.
T Consensus 299 g~~~~A~~~~~~al~~~~~~ 318 (368)
T 1fch_A 299 GAHREAVEHFLEALNMQRKS 318 (368)
T ss_dssp TCHHHHHHHHHHHHHHHHTC
T ss_pred CCHHHHHHHHHHHHHhCCCC
Confidence 99999999999999998764
No 13
>4eqf_A PEX5-related protein; accessory protein, tetratricopeptide repeat, TPR; 3.00A {Mus musculus}
Probab=99.93 E-value=1e-24 Score=229.55 Aligned_cols=272 Identities=15% Similarity=0.116 Sum_probs=237.3
Q ss_pred cchhhccCchHHHHhccCchhhHHHHHHHHHHHHhhccCCcCCchHHhhhHHHHHHhCCchHHHHhHHHHHHHHHHHHHH
Q 006120 25 AAWAVSPNHGIVFDDTWKIVDDLEILVKRLKAKQAKDGKLKGDNSDAFSDAGWSRELGTSAEISEKRVFWEESTHDYAVF 104 (660)
Q Consensus 25 ~~~~~~~~lg~~y~~~~~~~~al~~~~~~~~~a~~~~~~l~~~~~~a~~~~~~~~~l~~~~~~~~~~~~l~~~~~~~g~~ 104 (660)
.....++++|..+...|++.+++..+.++++. .|.. ...+..++.++...|++
T Consensus 63 ~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~--------~p~~-------------------~~~~~~lg~~~~~~g~~ 115 (365)
T 4eqf_A 63 KDWPGAFEEGLKRLKEGDLPVTILFMEAAILQ--------DPGD-------------------AEAWQFLGITQAENENE 115 (365)
T ss_dssp TTCTTHHHHHHHHHHHTCHHHHHHHHHHHHHH--------CTTC-------------------HHHHHHHHHHHHHTTCH
T ss_pred cchhHHHHHHHHHHHCCCHHHHHHHHHHHHHh--------CcCC-------------------HHHHHHHHHHHHHCCCH
Confidence 44566899999999999999999999999983 3332 34456678889999999
Q ss_pred HHHHHHHHHHHhhccCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHH----------HHHHHHHcCC
Q 006120 105 VKELGVLRNRADGARSREEAFDGHMAIGRVLYEHQLFKEALVSFKRACELQPTDVRPHFR----------AGNCLYVLGR 174 (660)
Q Consensus 105 ~~Al~~l~~a~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~----------la~~~~~~g~ 174 (660)
.+|+..++++++..+... .++..+|.++...|++++|+..|+++++..|+....+.. +|.++...|+
T Consensus 116 ~~A~~~~~~al~~~p~~~---~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~l~~~~~~~g~ 192 (365)
T 4eqf_A 116 QAAIVALQRCLELQPNNL---KALMALAVSYTNTSHQQDACEALKNWIKQNPKYKYLVKNKKGSPGLTRRMSKSPVDSSV 192 (365)
T ss_dssp HHHHHHHHHHHHHCTTCH---HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCHHHHCC-------------------CCHH
T ss_pred HHHHHHHHHHHhcCCCCH---HHHHHHHHHHHccccHHHHHHHHHHHHHhCccchHHHhhhccchHHHHHHHHHHhhhhh
Confidence 999999999999877664 789999999999999999999999999999876655544 4999999999
Q ss_pred HHHHHHHHHHHHHHhccCCCchhchHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHCCCHHHH
Q 006120 175 YREAKEEYLLALEAAETGGNQWAYLLPQIYVNLGIALEGEGMVLSACEYYRESAILCPTHFRALKLLGSALFGVGEYRAA 254 (660)
Q Consensus 175 ~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A 254 (660)
+++|+..++++++..|... .+.++..+|.++...|++++|+.+++++++..|+++.++..+|.++...|++++|
T Consensus 193 ~~~A~~~~~~al~~~p~~~------~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A 266 (365)
T 4eqf_A 193 LEGVKELYLEAAHQNGDMI------DPDLQTGLGVLFHLSGEFNRAIDAFNAALTVRPEDYSLWNRLGATLANGDRSEEA 266 (365)
T ss_dssp HHHHHHHHHHHHHHSCSSC------CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHH
T ss_pred HHHHHHHHHHHHHhCcCcc------CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHH
Confidence 9999999999999998732 3578899999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHhCCCCHHHHHHHHHHHHhCCChHHHHHHHHHHHHhCCC------------CHHHHHHHHHHHHHhcCCCHH
Q 006120 255 VKALEEAIFIKPDYADAHCDLASALHAMGEDERAIEVFQKAIDLKPG------------HVDALYNLGGLYMDLGAGETE 322 (660)
Q Consensus 255 ~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~------------~~~a~~~La~~~~~~~~g~~~ 322 (660)
+..|++++++.|+++.++.++|.++..+|++++|+.+|++++++.|+ +..+|..++.++..+ |+.+
T Consensus 267 ~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~--g~~~ 344 (365)
T 4eqf_A 267 VEAYTRALEIQPGFIRSRYNLGISCINLGAYREAVSNFLTALSLQRKSRNQQQVPHPAISGNIWAALRIALSLM--DQPE 344 (365)
T ss_dssp HHHHHHHHHHCTTCHHHHHHHHHHHHHHTCCHHHHHHHHHHHHHHHCC------------CHHHHHHHHHHHHH--TCHH
T ss_pred HHHHHHHHhcCCCchHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcccCCCcccchhhhHHHHHHHHHHHHHHc--CcHH
Confidence 99999999999999999999999999999999999999999999877 357899999999999 9999
Q ss_pred HHHHHHHHHHcc
Q 006120 323 EAKKALKEALKM 334 (660)
Q Consensus 323 eA~~~~~~al~l 334 (660)
.|....++.+..
T Consensus 345 ~a~~~~~~~l~~ 356 (365)
T 4eqf_A 345 LFQAANLGDLDV 356 (365)
T ss_dssp HHHHHHTTCCGG
T ss_pred HHHHHHHhhHHH
Confidence 999888775544
No 14
>1fch_A Peroxisomal targeting signal 1 receptor; protein-peptide complex, tetratricopeptide repeat, TPR, helical repeat, signaling protein; 2.20A {Homo sapiens} SCOP: a.118.8.1 PDB: 2j9q_A 3imz_B* 3r9a_B* 2c0m_A 2c0l_A
Probab=99.93 E-value=2.6e-24 Score=226.23 Aligned_cols=270 Identities=16% Similarity=0.186 Sum_probs=244.9
Q ss_pred chhhccCchHHHHhccCchhhHHHHHHHHHHHHhhccCCcCCchHHhhhHHHHHHhCCchHHHHhHHHHHHHHHHHHHHH
Q 006120 26 AWAVSPNHGIVFDDTWKIVDDLEILVKRLKAKQAKDGKLKGDNSDAFSDAGWSRELGTSAEISEKRVFWEESTHDYAVFV 105 (660)
Q Consensus 26 ~~~~~~~lg~~y~~~~~~~~al~~~~~~~~~a~~~~~~l~~~~~~a~~~~~~~~~l~~~~~~~~~~~~l~~~~~~~g~~~ 105 (660)
....++++|..+...|++.+++..+.+.++ ..|.. ...+..++.++...|+++
T Consensus 63 ~~~~~~~~~~~~~~~g~~~~A~~~~~~al~--------~~p~~-------------------~~~~~~l~~~~~~~g~~~ 115 (368)
T 1fch_A 63 DHPQPFEEGLRRLQEGDLPNAVLLFEAAVQ--------QDPKH-------------------MEAWQYLGTTQAENEQEL 115 (368)
T ss_dssp TCSSHHHHHHHHHHTTCHHHHHHHHHHHHH--------SCTTC-------------------HHHHHHHHHHHHHTTCHH
T ss_pred chHHHHHHHHHHHHCCCHHHHHHHHHHHHH--------hCCCC-------------------HHHHHHHHHHHHHCcCHH
Confidence 367788999999999999999999999988 23332 334556688889999999
Q ss_pred HHHHHHHHHHhhccCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHH----------------HHHHHH
Q 006120 106 KELGVLRNRADGARSREEAFDGHMAIGRVLYEHQLFKEALVSFKRACELQPTDVRPHF----------------RAGNCL 169 (660)
Q Consensus 106 ~Al~~l~~a~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~----------------~la~~~ 169 (660)
+|+..++++++..+... .++..+|.++...|++++|+..|+++++..|.....+. .++.++
T Consensus 116 ~A~~~~~~al~~~~~~~---~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 192 (368)
T 1fch_A 116 LAISALRRCLELKPDNQ---TALMALAVSFTNESLQRQACEILRDWLRYTPAYAHLVTPAEEGAGGAGLGPSKRILGSLL 192 (368)
T ss_dssp HHHHHHHHHHHHCTTCH---HHHHHHHHHHHHTTCHHHHHHHHHHHHHTSTTTGGGCC---------------CTTHHHH
T ss_pred HHHHHHHHHHhcCCCCH---HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCcHHHHHHHHHHhhhhcccHHHHHHHHHh
Confidence 99999999999887664 78999999999999999999999999999998776654 466666
Q ss_pred HHcCCHHHHHHHHHHHHHHhccCCCchhchHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHCC
Q 006120 170 YVLGRYREAKEEYLLALEAAETGGNQWAYLLPQIYVNLGIALEGEGMVLSACEYYRESAILCPTHFRALKLLGSALFGVG 249 (660)
Q Consensus 170 ~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g 249 (660)
..|++++|+..++++++..|... .+.++..+|.++...|++++|+.++++++...|+++.++..+|.++...|
T Consensus 193 -~~~~~~~A~~~~~~a~~~~p~~~------~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~~g 265 (368)
T 1fch_A 193 -SDSLFLEVKELFLAAVRLDPTSI------DPDVQCGLGVLFNLSGEYDKAVDCFTAALSVRPNDYLLWNKLGATLANGN 265 (368)
T ss_dssp -HHHHHHHHHHHHHHHHHHSTTSC------CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTT
T ss_pred -hcccHHHHHHHHHHHHHhCcCcc------cHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCCHHHHHHHHHHHHHcC
Confidence 99999999999999999998743 35788999999999999999999999999999999999999999999999
Q ss_pred CHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhCCChHHHHHHHHHHHHhCCCC-----------HHHHHHHHHHHHHhcC
Q 006120 250 EYRAAVKALEEAIFIKPDYADAHCDLASALHAMGEDERAIEVFQKAIDLKPGH-----------VDALYNLGGLYMDLGA 318 (660)
Q Consensus 250 ~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~-----------~~a~~~La~~~~~~~~ 318 (660)
++++|+..|++++++.|+++.++.++|.++..+|++++|+.+|++++++.|++ ..+|..+|.++..+
T Consensus 266 ~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~-- 343 (368)
T 1fch_A 266 QSEEAVAAYRRALELQPGYIRSRYNLGISCINLGAHREAVEHFLEALNMQRKSRGPRGEGGAMSENIWSTLRLALSML-- 343 (368)
T ss_dssp CHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHTC------CCCCCHHHHHHHHHHHHHH--
T ss_pred CHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCCCccccccchhhHHHHHHHHHHHHh--
Confidence 99999999999999999999999999999999999999999999999999888 89999999999999
Q ss_pred CCHHHHHHHHHHHHcc
Q 006120 319 GETEEAKKALKEALKM 334 (660)
Q Consensus 319 g~~~eA~~~~~~al~l 334 (660)
|++++|...++++++.
T Consensus 344 g~~~~A~~~~~~~l~~ 359 (368)
T 1fch_A 344 GQSDAYGAADARDLST 359 (368)
T ss_dssp TCGGGHHHHHTTCHHH
T ss_pred CChHhHHHhHHHHHHH
Confidence 9999999999987765
No 15
>3cv0_A Peroxisome targeting signal 1 receptor PEX5; TPR motifs, TPR protein, peroxin 5, PEX5, PTS1 binding domain, protein-peptide complex, receptor; 2.00A {Trypanosoma brucei} PDB: 3cvl_A 3cvn_A 3cvp_A 3cvq_A
Probab=99.93 E-value=2e-24 Score=222.67 Aligned_cols=273 Identities=15% Similarity=0.081 Sum_probs=240.9
Q ss_pred cchhhccCchHHHHhccCchhhHHHHHHHHHHHHhhccCCcCCchHHhhhHHHHHHhCCchHHHHhHHHHHHHHHHHHHH
Q 006120 25 AAWAVSPNHGIVFDDTWKIVDDLEILVKRLKAKQAKDGKLKGDNSDAFSDAGWSRELGTSAEISEKRVFWEESTHDYAVF 104 (660)
Q Consensus 25 ~~~~~~~~lg~~y~~~~~~~~al~~~~~~~~~a~~~~~~l~~~~~~a~~~~~~~~~l~~~~~~~~~~~~l~~~~~~~g~~ 104 (660)
.....++.+|..+...+++.+++..+.+.++. .+. ....+..++.++...|++
T Consensus 19 ~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~--------~~~-------------------~~~~~~~l~~~~~~~~~~ 71 (327)
T 3cv0_A 19 MYHENPMEEGLSMLKLANLAEAALAFEAVCQA--------APE-------------------REEAWRSLGLTQAENEKD 71 (327)
T ss_dssp GGSSCHHHHHHHHHHTTCHHHHHHHHHHHHHH--------CTT-------------------CHHHHHHHHHHHHHTTCH
T ss_pred hhhHHHHHHHHHHHHhccHHHHHHHHHHHHHh--------CCC-------------------CHHHHHHHHHHHHHcCCH
Confidence 35567789999999999999999999988883 222 233445667888899999
Q ss_pred HHHHHHHHHHHhhccCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHH--------------HH-HH
Q 006120 105 VKELGVLRNRADGARSREEAFDGHMAIGRVLYEHQLFKEALVSFKRACELQPTDVRPHFRA--------------GN-CL 169 (660)
Q Consensus 105 ~~Al~~l~~a~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l--------------a~-~~ 169 (660)
.+|+..++++++..+... .++..+|.++...|++++|+..++++++..|.....+..+ +. ++
T Consensus 72 ~~A~~~~~~a~~~~~~~~---~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 148 (327)
T 3cv0_A 72 GLAIIALNHARMLDPKDI---AVHAALAVSHTNEHNANAALASLRAWLLSQPQYEQLGSVNLQADVDIDDLNVQSEDFFF 148 (327)
T ss_dssp HHHHHHHHHHHHHCTTCH---HHHHHHHHHHHHTTCHHHHHHHHHHHHHTSTTTTTC--------------------CCT
T ss_pred HHHHHHHHHHHhcCcCCH---HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCccHHHHHHHhHHHHHHHHHHHHHHhHHH
Confidence 999999999999877654 7889999999999999999999999999999887777766 66 68
Q ss_pred HHcCCHHHHHHHHHHHHHHhccCCCchhchHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHCC
Q 006120 170 YVLGRYREAKEEYLLALEAAETGGNQWAYLLPQIYVNLGIALEGEGMVLSACEYYRESAILCPTHFRALKLLGSALFGVG 249 (660)
Q Consensus 170 ~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g 249 (660)
...|++++|+..++++++..|. ...++..+|.++...|++++|+.+++++++..|++..++..+|.++...|
T Consensus 149 ~~~~~~~~A~~~~~~~~~~~~~--------~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~ 220 (327)
T 3cv0_A 149 AAPNEYRECRTLLHAALEMNPN--------DAQLHASLGVLYNLSNNYDSAAANLRRAVELRPDDAQLWNKLGATLANGN 220 (327)
T ss_dssp TSHHHHHHHHHHHHHHHHHSTT--------CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTT
T ss_pred HHcccHHHHHHHHHHHHhhCCC--------CHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcC
Confidence 8899999999999999999988 67899999999999999999999999999999999999999999999999
Q ss_pred CHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhCCChHHHHHHHHHHHHhCCC------------CHHHHHHHHHHHHHhc
Q 006120 250 EYRAAVKALEEAIFIKPDYADAHCDLASALHAMGEDERAIEVFQKAIDLKPG------------HVDALYNLGGLYMDLG 317 (660)
Q Consensus 250 ~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~------------~~~a~~~La~~~~~~~ 317 (660)
++++|+..++++++..|++..++..+|.++..+|++++|+.++++++...|+ +..++..++.++..+
T Consensus 221 ~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~- 299 (327)
T 3cv0_A 221 RPQEALDAYNRALDINPGYVRVMYNMAVSYSNMSQYDLAAKQLVRAIYMQVGGTTPTGEASREATRSMWDFFRMLLNVM- 299 (327)
T ss_dssp CHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTSCC-----CCTHHHHHHHHHHHHHHHT-
T ss_pred CHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCccccccccchhhcCHHHHHHHHHHHHhc-
Confidence 9999999999999999999999999999999999999999999999999999 789999999999999
Q ss_pred CCCHHHHHHHHHHHHcccCC
Q 006120 318 AGETEEAKKALKEALKMTNR 337 (660)
Q Consensus 318 ~g~~~eA~~~~~~al~l~p~ 337 (660)
|++++|...++++++..|+
T Consensus 300 -g~~~~A~~~~~~~l~~~~~ 318 (327)
T 3cv0_A 300 -NRPDLVELTYAQNVEPFAK 318 (327)
T ss_dssp -TCHHHHHHHTTCCSHHHHH
T ss_pred -CCHHHHHHHHHHHHHhcch
Confidence 9999999999988876543
No 16
>2xpi_A Anaphase-promoting complex subunit CUT9; cell cycle, TPR, ubiquitin ligase; 2.60A {Schizosaccharomyces pombe}
Probab=99.93 E-value=1e-23 Score=236.95 Aligned_cols=289 Identities=15% Similarity=0.055 Sum_probs=204.8
Q ss_pred CcchhhccCchHHHHhccCchhhHHHHHHHHHHHHhhccCCcCCchHHhhhHHHHHHhC-------------------Cc
Q 006120 24 TAAWAVSPNHGIVFDDTWKIVDDLEILVKRLKAKQAKDGKLKGDNSDAFSDAGWSRELG-------------------TS 84 (660)
Q Consensus 24 p~~~~~~~~lg~~y~~~~~~~~al~~~~~~~~~a~~~~~~l~~~~~~a~~~~~~~~~l~-------------------~~ 84 (660)
+....+++.+|..|.+.|++.+|++.+.+.++. .+....++..+....... ..
T Consensus 197 ~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~--------~p~~~~~~~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 268 (597)
T 2xpi_A 197 KLEASMCYLRGQVYTNLSNFDRAKECYKEALMV--------DAKCYEAFDQLVSNHLLTADEEWDLVLKLNYSTYSKEDA 268 (597)
T ss_dssp CHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--------CTTCHHHHHHHHHTTCSCHHHHHHHHHHSCTHHHHGGGH
T ss_pred chhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--------CchhhHHHHHHHHhhcccchhHHHHHHhcCCcccccchH
Confidence 335788999999999999999999999999883 455444443332211100 00
Q ss_pred hHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHhhccCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHH
Q 006120 85 AEISEKRVFWEESTHDYAVFVKELGVLRNRADGARSREEAFDGHMAIGRVLYEHQLFKEALVSFKRACELQPTDVRPHFR 164 (660)
Q Consensus 85 ~~~~~~~~~l~~~~~~~g~~~~Al~~l~~a~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~ 164 (660)
......+..++..+...|++++|+..++++++. +.....+..+|..+...|++++|+..|+++++..|++..++..
T Consensus 269 ~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~----~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~ 344 (597)
T 2xpi_A 269 AFLRSLYMLKLNKTSHEDELRRAEDYLSSINGL----EKSSDLLLCKADTLFVRSRFIDVLAITTKILEIDPYNLDVYPL 344 (597)
T ss_dssp HHHHHHHHTTSCTTTTHHHHHHHHHHHHTSTTG----GGCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCCTTHHH
T ss_pred HHHHHHHHHHHHHHcCcchHHHHHHHHHHhhcC----CchHHHHHHHHHHHHHhcCHHHHHHHHHHHHHcCcccHHHHHH
Confidence 001111222244455667777777777766654 2234667777777777777777777777777777777777777
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHHHhccCCCchhchHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCcHHHHHHHHHH
Q 006120 165 AGNCLYVLGRYREAKEEYLLALEAAETGGNQWAYLLPQIYVNLGIALEGEGMVLSACEYYRESAILCPTHFRALKLLGSA 244 (660)
Q Consensus 165 la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~ 244 (660)
++.++...|++++|...++++++..|. ...++..+|.++...|++++|+.+|+++++..|.+..+|..++.+
T Consensus 345 l~~~~~~~g~~~~A~~~~~~~~~~~~~--------~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~ 416 (597)
T 2xpi_A 345 HLASLHESGEKNKLYLISNDLVDRHPE--------KAVTWLAVGIYYLCVNKISEARRYFSKSSTMDPQFGPAWIGFAHS 416 (597)
T ss_dssp HHHHHHHHTCHHHHHHHHHHHHHHCTT--------SHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHH
T ss_pred HHHHHHHhCCHHHHHHHHHHHHhhCcc--------cHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCCHHHHHHHHHH
Confidence 777777777777777777777777666 566777777777777777777777777777777777777777777
Q ss_pred HHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhCCChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCCCHHHH
Q 006120 245 LFGVGEYRAAVKALEEAIFIKPDYADAHCDLASALHAMGEDERAIEVFQKAIDLKPGHVDALYNLGGLYMDLGAGETEEA 324 (660)
Q Consensus 245 ~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~La~~~~~~~~g~~~eA 324 (660)
+...|++++|+..|+++++..|++..++..+|.+|...|++++|+..|+++++..|.++.++..++.++... |++++|
T Consensus 417 ~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~--g~~~~A 494 (597)
T 2xpi_A 417 FAIEGEHDQAISAYTTAARLFQGTHLPYLFLGMQHMQLGNILLANEYLQSSYALFQYDPLLLNELGVVAFNK--SDMQTA 494 (597)
T ss_dssp HHHHTCHHHHHHHHHHHHHTTTTCSHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHT--TCHHHH
T ss_pred HHHcCCHHHHHHHHHHHHHhCccchHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHh--CCHHHH
Confidence 777777777777777777777777777777777777777777777777777777777777777777777776 777777
Q ss_pred HHHHHHHHcc
Q 006120 325 KKALKEALKM 334 (660)
Q Consensus 325 ~~~~~~al~l 334 (660)
+..|++++++
T Consensus 495 ~~~~~~~~~~ 504 (597)
T 2xpi_A 495 INHFQNALLL 504 (597)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHh
Confidence 7777777776
No 17
>3fp2_A TPR repeat-containing protein YHR117W; TOM71, mitochondria translocation, allosteric REG phosphoprotein, TPR repeat, ATP-binding; 1.98A {Saccharomyces cerevisiae} PDB: 3fp3_A 3fp4_A 3lca_A
Probab=99.92 E-value=2.1e-23 Score=230.95 Aligned_cols=232 Identities=17% Similarity=0.227 Sum_probs=135.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhccCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCC
Q 006120 95 EESTHDYAVFVKELGVLRNRADGARSREEAFDGHMAIGRVLYEHQLFKEALVSFKRACELQPTDVRPHFRAGNCLYVLGR 174 (660)
Q Consensus 95 ~~~~~~~g~~~~Al~~l~~a~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~ 174 (660)
+.++...|++.+|+..++++++..+. ..++..+|.++...|++++|+..|+++++..|+++.++..+|.++...|+
T Consensus 250 g~~~~~~~~~~~A~~~~~~~~~~~~~----~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 325 (537)
T 3fp2_A 250 GIFHFLKNNLLDAQVLLQESINLHPT----PNSYIFLALTLADKENSQEFFKFFQKAVDLNPEYPPTYYHRGQMYFILQD 325 (537)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHCCC----HHHHHHHHHHTCCSSCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTC
T ss_pred HHHHHhcccHHHHHHHHHHHHhcCCC----chHHHHHHHHHHHhcCHHHHHHHHHHHhccCCCCHHHHHHHHHHHHhcCC
Confidence 33344444444444444444444333 23444555555555555555555555555555555555555555555555
Q ss_pred HHHHHHHHHHHHHHhccCCCchhchHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHCCCHHHH
Q 006120 175 YREAKEEYLLALEAAETGGNQWAYLLPQIYVNLGIALEGEGMVLSACEYYRESAILCPTHFRALKLLGSALFGVGEYRAA 254 (660)
Q Consensus 175 ~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A 254 (660)
+++|+..++++++..|. ...++..+|.++...|++++|+.+++++++..|+++.++..+|.++...|++++|
T Consensus 326 ~~~A~~~~~~a~~~~~~--------~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A 397 (537)
T 3fp2_A 326 YKNAKEDFQKAQSLNPE--------NVYPYIQLACLLYKQGKFTESEAFFNETKLKFPTLPEVPTFFAEILTDRGDFDTA 397 (537)
T ss_dssp HHHHHHHHHHHHHHCTT--------CSHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTHHHHHHHHHHHHTTCHHHH
T ss_pred HHHHHHHHHHHHHhCCC--------CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHhCCHHHH
Confidence 55555555555555554 3344555555555555555555555555555555555555555555555555555
Q ss_pred HHHHHHHHHhCCCCH------HHHHHHHHHHHhC----------CChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcC
Q 006120 255 VKALEEAIFIKPDYA------DAHCDLASALHAM----------GEDERAIEVFQKAIDLKPGHVDALYNLGGLYMDLGA 318 (660)
Q Consensus 255 ~~~~~~al~~~p~~~------~~~~~la~~~~~~----------g~~~~A~~~~~~al~~~p~~~~a~~~La~~~~~~~~ 318 (660)
+..|++++++.|++. ..+..+|.++... |++++|+.+++++++.+|++..++..+|.++...
T Consensus 398 ~~~~~~a~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~l~~~~~~~-- 475 (537)
T 3fp2_A 398 IKQYDIAKRLEEVQEKIHVGIGPLIGKATILARQSSQDPTQLDEEKFNAAIKLLTKACELDPRSEQAKIGLAQLKLQM-- 475 (537)
T ss_dssp HHHHHHHHHHHHHCSSCSSTTHHHHHHHHHHHHHHTC----CCHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHT--
T ss_pred HHHHHHHHHcCCcchhhHHHHHHHHHHHHHHHHHhhccchhhhHhHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHh--
Confidence 555555555544332 2234445555555 6666777777777777888888888888888888
Q ss_pred CCHHHHHHHHHHHHcccCChhH
Q 006120 319 GETEEAKKALKEALKMTNRVEL 340 (660)
Q Consensus 319 g~~~eA~~~~~~al~l~p~~~~ 340 (660)
|++++|+.+|++++++.|....
T Consensus 476 g~~~~A~~~~~~al~~~~~~~~ 497 (537)
T 3fp2_A 476 EKIDEAIELFEDSAILARTMDE 497 (537)
T ss_dssp TCHHHHHHHHHHHHHHC--CHH
T ss_pred ccHHHHHHHHHHHHHhCCCcHH
Confidence 8888888888888888887443
No 18
>3hym_B Cell division cycle protein 16 homolog; APC, anaphase promoting complex, cell cycle, mitosis, cyclosome, TPR, ubiquitin, ubiquitin ligase, twinning; 2.80A {Homo sapiens}
Probab=99.92 E-value=6.7e-24 Score=218.94 Aligned_cols=236 Identities=17% Similarity=0.101 Sum_probs=223.1
Q ss_pred HhHHHHHHHHHHHHHHHHHHHHHHHHHhhccCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHH
Q 006120 89 EKRVFWEESTHDYAVFVKELGVLRNRADGARSREEAFDGHMAIGRVLYEHQLFKEALVSFKRACELQPTDVRPHFRAGNC 168 (660)
Q Consensus 89 ~~~~~l~~~~~~~g~~~~Al~~l~~a~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~ 168 (660)
.....++..+...|++.+|+..++++++..+... .++..++.++...|++++|+..++++++.+|.++.++..+|.+
T Consensus 23 ~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~---~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~ 99 (330)
T 3hym_B 23 DVVVSLAERHYYNCDFKMCYKLTSVVMEKDPFHA---SCLPVHIGTLVELNKANELFYLSHKLVDLYPSNPVSWFAVGCY 99 (330)
T ss_dssp TTHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCT---TTHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTSTHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCh---hhHHHHHHHHHHhhhHHHHHHHHHHHHHhCcCCHHHHHHHHHH
Confidence 4556667888889999999999999999887665 6677889999999999999999999999999999999999999
Q ss_pred HHHcC-CHHHHHHHHHHHHHHhccCCCchhchHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHH
Q 006120 169 LYVLG-RYREAKEEYLLALEAAETGGNQWAYLLPQIYVNLGIALEGEGMVLSACEYYRESAILCPTHFRALKLLGSALFG 247 (660)
Q Consensus 169 ~~~~g-~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~ 247 (660)
+...| ++++|+..++++++..|. .+.++..+|.++...|++++|+..++++++..|++..++..+|.++..
T Consensus 100 ~~~~~~~~~~A~~~~~~a~~~~~~--------~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~ 171 (330)
T 3hym_B 100 YLMVGHKNEHARRYLSKATTLEKT--------YGPAWIAYGHSFAVESEHDQAMAAYFTAAQLMKGCHLPMLYIGLEYGL 171 (330)
T ss_dssp HHHSCSCHHHHHHHHHHHHTTCTT--------CTHHHHHHHHHHHHHTCHHHHHHHHHHHHHHTTTCSHHHHHHHHHHHH
T ss_pred HHHhhhhHHHHHHHHHHHHHhCCc--------cHHHHHHHHHHHHHccCHHHHHHHHHHHHHhccccHHHHHHHHHHHHH
Confidence 99999 999999999999999988 678899999999999999999999999999999999999999999999
Q ss_pred CCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhCCChHHHHHHHHHHHHhC---------CCCHHHHHHHHHHHHHhcC
Q 006120 248 VGEYRAAVKALEEAIFIKPDYADAHCDLASALHAMGEDERAIEVFQKAIDLK---------PGHVDALYNLGGLYMDLGA 318 (660)
Q Consensus 248 ~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~---------p~~~~a~~~La~~~~~~~~ 318 (660)
.|++++|+..++++++..|+++.++..+|.++...|++++|+.+++++++.. |..+.++..+|.++...
T Consensus 172 ~~~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~la~~~~~~-- 249 (330)
T 3hym_B 172 TNNSKLAERFFSQALSIAPEDPFVMHEVGVVAFQNGEWKTAEKWFLDALEKIKAIGNEVTVDKWEPLLNNLGHVCRKL-- 249 (330)
T ss_dssp TTCHHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTTSCSCTTTTCCHHHHHHHHHHHHT--
T ss_pred HhhHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHcccHHHHHHHHHHHHHHhhhccccccccHHHHHHHHHHHHHHHh--
Confidence 9999999999999999999999999999999999999999999999999986 66788999999999999
Q ss_pred CCHHHHHHHHHHHHcccCC
Q 006120 319 GETEEAKKALKEALKMTNR 337 (660)
Q Consensus 319 g~~~eA~~~~~~al~l~p~ 337 (660)
|++++|+.++++++++.|+
T Consensus 250 g~~~~A~~~~~~a~~~~~~ 268 (330)
T 3hym_B 250 KKYAEALDYHRQALVLIPQ 268 (330)
T ss_dssp TCHHHHHHHHHHHHHHSTT
T ss_pred cCHHHHHHHHHHHHhhCcc
Confidence 9999999999999999886
No 19
>2gw1_A Mitochondrial precursor proteins import receptor; TPR, protein transport; 3.00A {Saccharomyces cerevisiae}
Probab=99.92 E-value=1.3e-23 Score=230.99 Aligned_cols=241 Identities=14% Similarity=0.132 Sum_probs=176.2
Q ss_pred hHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHhhccCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHH
Q 006120 85 AEISEKRVFWEESTHDYAVFVKELGVLRNRADGARSREEAFDGHMAIGRVLYEHQLFKEALVSFKRACELQPTDVRPHFR 164 (660)
Q Consensus 85 ~~~~~~~~~l~~~~~~~g~~~~Al~~l~~a~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~ 164 (660)
+.....+..++.++...|++.+|+..++++++..+. ..++..+|.++...|++++|+..++++++..|.++.++..
T Consensus 234 ~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~~~----~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~ 309 (514)
T 2gw1_A 234 EKLAISLEHTGIFKFLKNDPLGAHEDIKKAIELFPR----VNSYIYMALIMADRNDSTEYYNYFDKALKLDSNNSSVYYH 309 (514)
T ss_dssp HHHHHHHHHHHHHHHHSSCHHHHHHHHHHHHHHCCC----HHHHHHHHHHHHTSSCCTTGGGHHHHHHTTCTTCTHHHHH
T ss_pred hHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCcc----HHHHHHHHHHHHHCCCHHHHHHHHHHHhhcCcCCHHHHHH
Confidence 344455556666666666666666666666665554 3566666677777777777777777777766766777777
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHHHhccCCCchhchHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCcHHHHHHHHHH
Q 006120 165 AGNCLYVLGRYREAKEEYLLALEAAETGGNQWAYLLPQIYVNLGIALEGEGMVLSACEYYRESAILCPTHFRALKLLGSA 244 (660)
Q Consensus 165 la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~ 244 (660)
+|.++...|++++|+..++++++..|. ...++..+|.++...|++++|+..++++++..|+++.++..+|.+
T Consensus 310 l~~~~~~~~~~~~A~~~~~~~~~~~~~--------~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~ 381 (514)
T 2gw1_A 310 RGQMNFILQNYDQAGKDFDKAKELDPE--------NIFPYIQLACLAYRENKFDDCETLFSEAKRKFPEAPEVPNFFAEI 381 (514)
T ss_dssp HHHHHHHTTCTTHHHHHHHHHHHTCSS--------CSHHHHHHHHHTTTTTCHHHHHHHHHHHHHHSTTCSHHHHHHHHH
T ss_pred HHHHHHHhCCHHHHHHHHHHHHHhChh--------hHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHcccCHHHHHHHHHH
Confidence 777777777777777777777777666 456677777777777777777777777777777777777777888
Q ss_pred HHHCCCHHHHHHHHHHHHHhCCCCHH------HHHHHHHHHHh---CCChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH
Q 006120 245 LFGVGEYRAAVKALEEAIFIKPDYAD------AHCDLASALHA---MGEDERAIEVFQKAIDLKPGHVDALYNLGGLYMD 315 (660)
Q Consensus 245 ~~~~g~~~~A~~~~~~al~~~p~~~~------~~~~la~~~~~---~g~~~~A~~~~~~al~~~p~~~~a~~~La~~~~~ 315 (660)
+...|++++|+..+++++...|++.. ++..+|.++.. .|++++|+..+++++..+|+++.++..+|.++..
T Consensus 382 ~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~ 461 (514)
T 2gw1_A 382 LTDKNDFDKALKQYDLAIELENKLDGIYVGIAPLVGKATLLTRNPTVENFIEATNLLEKASKLDPRSEQAKIGLAQMKLQ 461 (514)
T ss_dssp HHHTTCHHHHHHHHHHHHHHHHTSSSCSSCSHHHHHHHHHHHTSCCTTHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH
T ss_pred HHHCCCHHHHHHHHHHHHHhhhccchHHHHHHHHHHHHHHHhhhhhcCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHH
Confidence 88888888888888877777776643 77778888877 7888888888888888888777788888888877
Q ss_pred hcCCCHHHHHHHHHHHHcccCChh
Q 006120 316 LGAGETEEAKKALKEALKMTNRVE 339 (660)
Q Consensus 316 ~~~g~~~eA~~~~~~al~l~p~~~ 339 (660)
. |++++|..+|++++++.|+..
T Consensus 462 ~--g~~~~A~~~~~~a~~~~~~~~ 483 (514)
T 2gw1_A 462 Q--EDIDEAITLFEESADLARTME 483 (514)
T ss_dssp T--TCHHHHHHHHHHHHHHCSSHH
T ss_pred h--cCHHHHHHHHHHHHHhccccH
Confidence 7 788888888888888877643
No 20
>2y4t_A DNAJ homolog subfamily C member 3; chaperone, endoplasmic reticulum, protein folding, tetratricopeptiderepeat, J domain, unfolded protein respons; 3.00A {Homo sapiens} PDB: 2y4u_A
Probab=99.92 E-value=2e-23 Score=225.93 Aligned_cols=254 Identities=16% Similarity=0.190 Sum_probs=226.2
Q ss_pred HhCCchHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHhhccCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCH
Q 006120 80 ELGTSAEISEKRVFWEESTHDYAVFVKELGVLRNRADGARSREEAFDGHMAIGRVLYEHQLFKEALVSFKRACELQPTDV 159 (660)
Q Consensus 80 ~l~~~~~~~~~~~~l~~~~~~~g~~~~Al~~l~~a~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~ 159 (660)
.+..+|.....+..++..+...|++.+|+..++++++..+.. ..+++.+|.++...|++++|+..|+++++.+|++.
T Consensus 18 ~~~~~p~~~~~~~~~~~~~~~~g~~~~A~~~~~~~l~~~p~~---~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~ 94 (450)
T 2y4t_A 18 LYFQSMADVEKHLELGKKLLAAGQLADALSQFHAAVDGDPDN---YIAYYRRATVFLAMGKSKAALPDLTKVIQLKMDFT 94 (450)
T ss_dssp -----CHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC---HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCH
T ss_pred cccccHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCcc---HHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCcH
Confidence 345567778888889999999999999999999999887765 48899999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHhccCC---Cchhch----HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCC
Q 006120 160 RPHFRAGNCLYVLGRYREAKEEYLLALEAAETGG---NQWAYL----LPQIYVNLGIALEGEGMVLSACEYYRESAILCP 232 (660)
Q Consensus 160 ~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~---~~~~~~----~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p 232 (660)
.++..+|.++...|++++|+..|+++++..|... ..+..+ ....+..+|.++...|++++|+..+++++...|
T Consensus 95 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~ 174 (450)
T 2y4t_A 95 AARLQRGHLLLKQGKLDEAEDDFKKVLKSNPSENEEKEAQSQLIKSDEMQRLRSQALNAFGSGDYTAAIAFLDKILEVCV 174 (450)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHTSCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCT
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC
Confidence 9999999999999999999999999999988732 111100 011244557789999999999999999999999
Q ss_pred CcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhCCChHHHHHHHHHHHHhCCCCHHHHHHH---
Q 006120 233 THFRALKLLGSALFGVGEYRAAVKALEEAIFIKPDYADAHCDLASALHAMGEDERAIEVFQKAIDLKPGHVDALYNL--- 309 (660)
Q Consensus 233 ~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~L--- 309 (660)
.+..++..+|.++...|++++|+..|+++++.+|+++.++..+|.++...|++++|+..+++++.+.|++...+..+
T Consensus 175 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~~~~~ 254 (450)
T 2y4t_A 175 WDAELRELRAECFIKEGEPRKAISDLKAASKLKNDNTEAFYKISTLYYQLGDHELSLSEVRECLKLDQDHKRCFAHYKQV 254 (450)
T ss_dssp TCHHHHHHHHHHHHHTTCGGGGHHHHHHHHHHHCSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHH
T ss_pred CChHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCChHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999887766
Q ss_pred ---------HHHHHHhcCCCHHHHHHHHHHHHcccCCh
Q 006120 310 ---------GGLYMDLGAGETEEAKKALKEALKMTNRV 338 (660)
Q Consensus 310 ---------a~~~~~~~~g~~~eA~~~~~~al~l~p~~ 338 (660)
|.++... |++++|+.+|++++++.|..
T Consensus 255 ~~~~~~~~~~~~~~~~--g~~~~A~~~~~~~l~~~p~~ 290 (450)
T 2y4t_A 255 KKLNKLIESAEELIRD--GRYTDATSKYESVMKTEPSI 290 (450)
T ss_dssp HHHHHHHHHHHHHHHH--TCHHHHHHHHHHHHHHCCSS
T ss_pred HHHHHHHHHHHHHHHc--CCHHHHHHHHHHHHhcCCcc
Confidence 9999998 99999999999999999873
No 21
>3fp2_A TPR repeat-containing protein YHR117W; TOM71, mitochondria translocation, allosteric REG phosphoprotein, TPR repeat, ATP-binding; 1.98A {Saccharomyces cerevisiae} PDB: 3fp3_A 3fp4_A 3lca_A
Probab=99.92 E-value=1.3e-23 Score=232.66 Aligned_cols=187 Identities=15% Similarity=0.175 Sum_probs=162.5
Q ss_pred CHHHHHHHHHHHHHhCCCCHH-------HHHHHHHHHHHcCCHHHHHHHHHHHHHHhccCCCchhchHHHHHHHHHHHHH
Q 006120 140 LFKEALVSFKRACELQPTDVR-------PHFRAGNCLYVLGRYREAKEEYLLALEAAETGGNQWAYLLPQIYVNLGIALE 212 (660)
Q Consensus 140 ~~~~A~~~~~~al~~~p~~~~-------~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~la~~~~ 212 (660)
++++|+..|+++++..|+++. ++..+|.++...|++++|+..++++++..|. ..++..+|.++.
T Consensus 217 ~~~~A~~~~~~~l~~~p~~~~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~~~~~~~~---------~~~~~~l~~~~~ 287 (537)
T 3fp2_A 217 LLTKSTDMYHSLLSANTVDDPLRENAALALCYTGIFHFLKNNLLDAQVLLQESINLHPT---------PNSYIFLALTLA 287 (537)
T ss_dssp HHHHHHHHHHHHHC--CCCHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCC---------HHHHHHHHHHTC
T ss_pred HHHHHHHHHHHHHHHCCCcchhhHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHhcCCC---------chHHHHHHHHHH
Confidence 455555566666666777644 5777888889999999999999999998875 367888999999
Q ss_pred HCCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhCCChHHHHHHH
Q 006120 213 GEGMVLSACEYYRESAILCPTHFRALKLLGSALFGVGEYRAAVKALEEAIFIKPDYADAHCDLASALHAMGEDERAIEVF 292 (660)
Q Consensus 213 ~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~ 292 (660)
..|++++|+.++++++...|+++.++..+|.++...|++++|+..+++++.+.|++..++..+|.++...|++++|+..+
T Consensus 288 ~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~ 367 (537)
T 3fp2_A 288 DKENSQEFFKFFQKAVDLNPEYPPTYYHRGQMYFILQDYKNAKEDFQKAQSLNPENVYPYIQLACLLYKQGKFTESEAFF 367 (537)
T ss_dssp CSSCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCSHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred HhcCHHHHHHHHHHHhccCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHhCCCCHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHcccCC
Q 006120 293 QKAIDLKPGHVDALYNLGGLYMDLGAGETEEAKKALKEALKMTNR 337 (660)
Q Consensus 293 ~~al~~~p~~~~a~~~La~~~~~~~~g~~~eA~~~~~~al~l~p~ 337 (660)
+++++..|+++.++..+|.++... |++++|+..|++++++.|+
T Consensus 368 ~~~~~~~~~~~~~~~~l~~~~~~~--g~~~~A~~~~~~a~~~~~~ 410 (537)
T 3fp2_A 368 NETKLKFPTLPEVPTFFAEILTDR--GDFDTAIKQYDIAKRLEEV 410 (537)
T ss_dssp HHHHHHCTTCTHHHHHHHHHHHHT--TCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHhCCCChHHHHHHHHHHHHh--CCHHHHHHHHHHHHHcCCc
Confidence 999999999999999999999988 9999999999999988754
No 22
>2gw1_A Mitochondrial precursor proteins import receptor; TPR, protein transport; 3.00A {Saccharomyces cerevisiae}
Probab=99.92 E-value=1.2e-23 Score=231.40 Aligned_cols=240 Identities=16% Similarity=0.072 Sum_probs=218.9
Q ss_pred HHhHHHHHHHHHH---HHHHHHHHHHHHHHHh-----h--ccCc----HHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 006120 88 SEKRVFWEESTHD---YAVFVKELGVLRNRAD-----G--ARSR----EEAFDGHMAIGRVLYEHQLFKEALVSFKRACE 153 (660)
Q Consensus 88 ~~~~~~l~~~~~~---~g~~~~Al~~l~~a~~-----~--~~~~----~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~ 153 (660)
...+...+..... .|++++|+..++++++ . .+.. +....+++.+|.++...|++++|+..|+++++
T Consensus 186 ~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~ 265 (514)
T 2gw1_A 186 ADKELMNGLSNLYKRSPESYDKADESFTKAARLFEEQLDKNNEDEKLKEKLAISLEHTGIFKFLKNDPLGAHEDIKKAIE 265 (514)
T ss_dssp HHHHHHHHHHHHSSCCTTHHHHHHHHHHHHHHHHHHHTTTSTTCHHHHHHHHHHHHHHHHHHHHSSCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhhhhccHHHHHHHHHHHHHHhhhhhccCccccccChHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHh
Confidence 3444555555554 7999999999999988 4 3332 66678999999999999999999999999999
Q ss_pred hCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhccCCCchhchHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCC
Q 006120 154 LQPTDVRPHFRAGNCLYVLGRYREAKEEYLLALEAAETGGNQWAYLLPQIYVNLGIALEGEGMVLSACEYYRESAILCPT 233 (660)
Q Consensus 154 ~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~ 233 (660)
..|. ..++..+|.++...|++++|+..++++++..|. ...++..+|.++...|++++|+..++++++..|.
T Consensus 266 ~~~~-~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~--------~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~ 336 (514)
T 2gw1_A 266 LFPR-VNSYIYMALIMADRNDSTEYYNYFDKALKLDSN--------NSSVYYHRGQMNFILQNYDQAGKDFDKAKELDPE 336 (514)
T ss_dssp HCCC-HHHHHHHHHHHHTSSCCTTGGGHHHHHHTTCTT--------CTHHHHHHHHHHHHTTCTTHHHHHHHHHHHTCSS
T ss_pred hCcc-HHHHHHHHHHHHHCCCHHHHHHHHHHHhhcCcC--------CHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhChh
Confidence 9999 999999999999999999999999999999988 5678999999999999999999999999999999
Q ss_pred cHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhCCChHHHHHHHHHHHHhCCCCHH------HHH
Q 006120 234 HFRALKLLGSALFGVGEYRAAVKALEEAIFIKPDYADAHCDLASALHAMGEDERAIEVFQKAIDLKPGHVD------ALY 307 (660)
Q Consensus 234 ~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~------a~~ 307 (660)
+..++..+|.++...|++++|+..++++++..|+++.++..+|.++...|++++|+..+++++...|++.. ++.
T Consensus 337 ~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~ 416 (514)
T 2gw1_A 337 NIFPYIQLACLAYRENKFDDCETLFSEAKRKFPEAPEVPNFFAEILTDKNDFDKALKQYDLAIELENKLDGIYVGIAPLV 416 (514)
T ss_dssp CSHHHHHHHHHTTTTTCHHHHHHHHHHHHHHSTTCSHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTSSSCSSCSHHHH
T ss_pred hHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHcccCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhhhccchHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999888755 999
Q ss_pred HHHHHHHH---hcCCCHHHHHHHHHHHHcccCCh
Q 006120 308 NLGGLYMD---LGAGETEEAKKALKEALKMTNRV 338 (660)
Q Consensus 308 ~La~~~~~---~~~g~~~eA~~~~~~al~l~p~~ 338 (660)
.+|.++.. . |++++|+..+++++.+.|+.
T Consensus 417 ~l~~~~~~~~~~--~~~~~A~~~~~~a~~~~~~~ 448 (514)
T 2gw1_A 417 GKATLLTRNPTV--ENFIEATNLLEKASKLDPRS 448 (514)
T ss_dssp HHHHHHHTSCCT--THHHHHHHHHHHHHHHCTTC
T ss_pred HHHHHHhhhhhc--CCHHHHHHHHHHHHHhCccc
Confidence 99999998 8 99999999999999998864
No 23
>4g1t_A Interferon-induced protein with tetratricopeptide 2; ISG, all alpha helix, antivirus, antiviral protein; 2.80A {Homo sapiens}
Probab=99.92 E-value=3.2e-23 Score=226.02 Aligned_cols=341 Identities=13% Similarity=0.044 Sum_probs=250.6
Q ss_pred cCCcchhhccCchHHHHhccCchhhHHHHHHHHHHHHhhccCCcCCchHHhhhHHHHHHhCCchHHHHhHHHHHHHHHHH
Q 006120 22 QRTAAWAVSPNHGIVFDDTWKIVDDLEILVKRLKAKQAKDGKLKGDNSDAFSDAGWSRELGTSAEISEKRVFWEESTHDY 101 (660)
Q Consensus 22 ~~p~~~~~~~~lg~~y~~~~~~~~al~~~~~~~~~a~~~~~~l~~~~~~a~~~~~~~~~l~~~~~~~~~~~~l~~~~~~~ 101 (660)
.+|....+|.|+|.+|...|++.+|+..+.++++......+....+....+...++ +.+....
T Consensus 89 ~~~~~~~~~~nla~~y~~~g~~~~A~~~~~ka~~i~~~~~~~~~~~~~~~~~~~g~-----------------~~~~~~~ 151 (472)
T 4g1t_A 89 AEIRSLVTWGNYAWVYYHMGRLSDVQIYVDKVKHVCEKFSSPYRIESPELDCEEGW-----------------TRLKCGG 151 (472)
T ss_dssp CTTTTHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCSSCCCCHHHHHHHHH-----------------HHHHHCT
T ss_pred cchHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHhHhcccccchhhHHHHHHHHH-----------------HHHHHcc
Confidence 46777888999999999999999999999998873222222222233333322222 1222334
Q ss_pred HHHHHHHHHHHHHHhhccCcHHHHHHHHHHHHH---HHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH----cCC
Q 006120 102 AVFVKELGVLRNRADGARSREEAFDGHMAIGRV---LYEHQLFKEALVSFKRACELQPTDVRPHFRAGNCLYV----LGR 174 (660)
Q Consensus 102 g~~~~Al~~l~~a~~~~~~~~~~~~~~~~lg~~---~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~----~g~ 174 (660)
+++++|+..|+++++..|+.+ .++..+|.+ +...++.++|+..|+++++++|+++.++..+|..+.. .++
T Consensus 152 ~~y~~A~~~~~kal~~~p~~~---~~~~~~~~~~~~l~~~~~~~~al~~~~~al~l~p~~~~~~~~l~~~~~~~~~~~~~ 228 (472)
T 4g1t_A 152 NQNERAKVCFEKALEKKPKNP---EFTSGLAIASYRLDNWPPSQNAIDPLRQAIRLNPDNQYLKVLLALKLHKMREEGEE 228 (472)
T ss_dssp THHHHHHHHHHHHHHHSTTCH---HHHHHHHHHHHHHHHSCCCCCTHHHHHHHHHHCSSCHHHHHHHHHHHHHCC-----
T ss_pred ccHHHHHHHHHHHHHhCCCCH---HHHHHHHHHHHHhcCchHHHHHHHHHHHHhhcCCcchHHHHHHHHHHHHHHhhhhH
Confidence 589999999999999988876 455556655 4456888999999999999999999999999877655 467
Q ss_pred HHHHHHHHHHHHHHhccCCCchhchHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHC------
Q 006120 175 YREAKEEYLLALEAAETGGNQWAYLLPQIYVNLGIALEGEGMVLSACEYYRESAILCPTHFRALKLLGSALFGV------ 248 (660)
Q Consensus 175 ~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~------ 248 (660)
+++|..++++++...|. ...++.++|.++...|++++|+..++++++..|+++.++..+|.+|...
T Consensus 229 ~~~a~~~~~~al~~~~~--------~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~y~~~~~~~~~ 300 (472)
T 4g1t_A 229 EGEGEKLVEEALEKAPG--------VTDVLRSAAKFYRRKDEPDKAIELLKKALEYIPNNAYLHCQIGCCYRAKVFQVMN 300 (472)
T ss_dssp -CHHHHHHHHHHHHCSS--------CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhCcc--------HHHHHHHHHHHHHHcCchHHHHHHHHHHHHhCCChHHHHHHHHHHHHHHHHHhhh
Confidence 88999999999999998 7889999999999999999999999999999999999999999988643
Q ss_pred -------------CCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhCCChHHHHHHHHHHHHhCCCCHH---HHHHHHHH
Q 006120 249 -------------GEYRAAVKALEEAIFIKPDYADAHCDLASALHAMGEDERAIEVFQKAIDLKPGHVD---ALYNLGGL 312 (660)
Q Consensus 249 -------------g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~---a~~~La~~ 312 (660)
+.+++|+..+++++.++|.+..++..+|.++...|++++|+.+|+++++++|+... .+..+|.+
T Consensus 301 ~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~kaL~~~~~~~~~~~~~~~~~~~ 380 (472)
T 4g1t_A 301 LRENGMYGKRKLLELIGHAVAHLKKADEANDNLFRVCSILASLHALADQYEEAEYYFQKEFSKELTPVAKQLLHLRYGNF 380 (472)
T ss_dssp C------CHHHHHHHHHHHHHHHHHHHHHCTTTCCCHHHHHHHHHHTTCHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhhHHHHHHHHHHHhhcCCchhhhhhhHHHHHHHhccHHHHHHHHHHHHhcCCCChHHHHHHHHHHHH
Confidence 34678999999999999999999999999999999999999999999999887643 46667765
Q ss_pred HH-HhcCCCHHHHHHHHHHHHcccCChhH-HHHHHHHHHHHHHhccCCCCCCCCCCccccCcchHHhhchhhhhhhhHHH
Q 006120 313 YM-DLGAGETEEAKKALKEALKMTNRVEL-HDAVSHLKQLQKKKSKGNRGTNGEGGFDIVEPSKFKTVGERTTVRQDLAN 390 (660)
Q Consensus 313 ~~-~~~~g~~~eA~~~~~~al~l~p~~~~-~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~ 390 (660)
+. .. |++++|+.+|++++++.|+... ......+..+..+.... .+..+......+.++...|+...|...+.+
T Consensus 381 ~~~~~--~~~~~Ai~~y~kal~i~~~~~~~~~~~~~l~~~~~~~l~~---~p~~~~~~~~LG~~~~~~g~~~~A~~~y~k 455 (472)
T 4g1t_A 381 QLYQM--KCEDKAIHHFIEGVKINQKSREKEKMKDKLQKIAKMRLSK---NGADSEALHVLAFLQELNEKMQQADEDSER 455 (472)
T ss_dssp HHHTS--SCHHHHHHHHHHHHHSCCCCHHHHHHHHHHHHHHHHHHHH---CC-CTTHHHHHHHHHHHHHHCC--------
T ss_pred HHHHC--CCHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHHHHHHHh---CCCCHHHHHHHHHHHHHcCCHHHHHHHHHH
Confidence 54 44 9999999999999999987433 22333333322221110 122333444446667777777777777777
Q ss_pred HhcCH
Q 006120 391 ALEIR 395 (660)
Q Consensus 391 al~~~ 395 (660)
|+++.
T Consensus 456 ALe~~ 460 (472)
T 4g1t_A 456 GLESG 460 (472)
T ss_dssp -----
T ss_pred HHhcC
Confidence 76544
No 24
>4g1t_A Interferon-induced protein with tetratricopeptide 2; ISG, all alpha helix, antivirus, antiviral protein; 2.80A {Homo sapiens}
Probab=99.92 E-value=7.8e-23 Score=222.95 Aligned_cols=290 Identities=14% Similarity=0.009 Sum_probs=239.5
Q ss_pred CCcchhhccCchHHHHhccCchhhHHHHHHHHHHHHhhccCCcCCchHHhhhHHHHHHhCCchHHHHhHHHHHHHHHHHH
Q 006120 23 RTAAWAVSPNHGIVFDDTWKIVDDLEILVKRLKAKQAKDGKLKGDNSDAFSDAGWSRELGTSAEISEKRVFWEESTHDYA 102 (660)
Q Consensus 23 ~p~~~~~~~~lg~~y~~~~~~~~al~~~~~~~~~a~~~~~~l~~~~~~a~~~~~~~~~l~~~~~~~~~~~~l~~~~~~~g 102 (660)
++.....|.++|.+|...|++.+|++.++++++..... ......+.....+..++.++...|
T Consensus 47 ~~~~a~~yn~Lg~~~~~~G~~~eAl~~~~kAl~~~~~~------------------~~~~~~~~~~~~~~nla~~y~~~g 108 (472)
T 4g1t_A 47 REFKATMCNLLAYLKHLKGQNEAALECLRKAEELIQQE------------------HADQAEIRSLVTWGNYAWVYYHMG 108 (472)
T ss_dssp ---CCHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHH------------------SGGGCTTTTHHHHHHHHHHHHHTT
T ss_pred ChhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhc------------------CccccchHHHHHHHHHHHHHHHcC
Confidence 44456667889999999999999999999998831111 011122333445666788899999
Q ss_pred HHHHHHHHHHHHHhhcc-----CcHHHHHHHHHHHHHHHHc--CCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHH---Hc
Q 006120 103 VFVKELGVLRNRADGAR-----SREEAFDGHMAIGRVLYEH--QLFKEALVSFKRACELQPTDVRPHFRAGNCLY---VL 172 (660)
Q Consensus 103 ~~~~Al~~l~~a~~~~~-----~~~~~~~~~~~lg~~~~~~--g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~---~~ 172 (660)
++.+|+..++++++..+ .......++..+|.++... +++++|+.+|+++++++|+++.++..+|.++. ..
T Consensus 109 ~~~~A~~~~~ka~~i~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~y~~A~~~~~kal~~~p~~~~~~~~~~~~~~~l~~~ 188 (472)
T 4g1t_A 109 RLSDVQIYVDKVKHVCEKFSSPYRIESPELDCEEGWTRLKCGGNQNERAKVCFEKALEKKPKNPEFTSGLAIASYRLDNW 188 (472)
T ss_dssp CHHHHHHHHHHHHHHHHHSCCSSCCCCHHHHHHHHHHHHHHCTTHHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHHS
T ss_pred ChHHHHHHHHHHHHHhHhcccccchhhHHHHHHHHHHHHHHccccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCc
Confidence 99999999999887643 2233457778888777654 57999999999999999999999999998865 45
Q ss_pred CCHHHHHHHHHHHHHHhccCCCchhchHHHHHHHHHHHHHH----CCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHC
Q 006120 173 GRYREAKEEYLLALEAAETGGNQWAYLLPQIYVNLGIALEG----EGMVLSACEYYRESAILCPTHFRALKLLGSALFGV 248 (660)
Q Consensus 173 g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~la~~~~~----~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~ 248 (660)
++.++|++.++++++++|. .+.++..+|..+.. .|++++|+.++++++..+|....++..+|.++...
T Consensus 189 ~~~~~al~~~~~al~l~p~--------~~~~~~~l~~~~~~~~~~~~~~~~a~~~~~~al~~~~~~~~~~~~lg~~~~~~ 260 (472)
T 4g1t_A 189 PPSQNAIDPLRQAIRLNPD--------NQYLKVLLALKLHKMREEGEEEGEGEKLVEEALEKAPGVTDVLRSAAKFYRRK 260 (472)
T ss_dssp CCCCCTHHHHHHHHHHCSS--------CHHHHHHHHHHHHHCC------CHHHHHHHHHHHHCSSCHHHHHHHHHHHHHT
T ss_pred hHHHHHHHHHHHHhhcCCc--------chHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHhCccHHHHHHHHHHHHHHc
Confidence 7788999999999999998 66777777766554 56788999999999999999999999999999999
Q ss_pred CCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhC-------------------CChHHHHHHHHHHHHhCCCCHHHHHHH
Q 006120 249 GEYRAAVKALEEAIFIKPDYADAHCDLASALHAM-------------------GEDERAIEVFQKAIDLKPGHVDALYNL 309 (660)
Q Consensus 249 g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~-------------------g~~~~A~~~~~~al~~~p~~~~a~~~L 309 (660)
|++++|+..++++++..|+++.++.++|.+|... +.+++|+..++++++++|.+..++..+
T Consensus 261 ~~~~~A~~~~~~al~~~p~~~~~~~~lg~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l 340 (472)
T 4g1t_A 261 DEPDKAIELLKKALEYIPNNAYLHCQIGCCYRAKVFQVMNLRENGMYGKRKLLELIGHAVAHLKKADEANDNLFRVCSIL 340 (472)
T ss_dssp TCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHHHHHHC------CHHHHHHHHHHHHHHHHHHHHHCTTTCCCHHHH
T ss_pred CchHHHHHHHHHHHHhCCChHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhhHHHHHHHHHHHhhcCCchhhhhhhH
Confidence 9999999999999999999999999999998643 346889999999999999999999999
Q ss_pred HHHHHHhcCCCHHHHHHHHHHHHcccCChhH
Q 006120 310 GGLYMDLGAGETEEAKKALKEALKMTNRVEL 340 (660)
Q Consensus 310 a~~~~~~~~g~~~eA~~~~~~al~l~p~~~~ 340 (660)
|.++... |++++|+.+|++++++.+++..
T Consensus 341 g~~~~~~--~~~~~A~~~~~kaL~~~~~~~~ 369 (472)
T 4g1t_A 341 ASLHALA--DQYEEAEYYFQKEFSKELTPVA 369 (472)
T ss_dssp HHHHHHT--TCHHHHHHHHHHHHHSCCCHHH
T ss_pred HHHHHHh--ccHHHHHHHHHHHHhcCCCChH
Confidence 9999999 9999999999999999887543
No 25
>3uq3_A Heat shock protein STI1; HSP90, peptide binding, chaperone; 2.60A {Saccharomyces cerevisiae}
Probab=99.91 E-value=1.1e-22 Score=201.91 Aligned_cols=227 Identities=20% Similarity=0.159 Sum_probs=212.0
Q ss_pred HHHhHHHHHHHHHHHHHHHHHHHHHHHHHhhccCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC-------H
Q 006120 87 ISEKRVFWEESTHDYAVFVKELGVLRNRADGARSREEAFDGHMAIGRVLYEHQLFKEALVSFKRACELQPTD-------V 159 (660)
Q Consensus 87 ~~~~~~~l~~~~~~~g~~~~Al~~l~~a~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~-------~ 159 (660)
....+..+|..+...|++.+|+..++++++.. .. ..++..+|.++...|++++|+..++++++..|.. +
T Consensus 4 ~a~~~~~~g~~~~~~~~~~~A~~~~~~a~~~~-~~---~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~ 79 (258)
T 3uq3_A 4 MADKEKAEGNKFYKARQFDEAIEHYNKAWELH-KD---ITYLNNRAAAEYEKGEYETAISTLNDAVEQGREMRADYKVIS 79 (258)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS-CC---THHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCHHHHH
T ss_pred HHHHHHHHHHHHHHhccHHHHHHHHHHHHHhh-cc---HHHHHHHHHHHHHcccHHHHHHHHHHHHHhCcccccchHHHH
Confidence 45567778899999999999999999999887 44 3789999999999999999999999999998876 7
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHhccCCCchhchHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCcHHHHH
Q 006120 160 RPHFRAGNCLYVLGRYREAKEEYLLALEAAETGGNQWAYLLPQIYVNLGIALEGEGMVLSACEYYRESAILCPTHFRALK 239 (660)
Q Consensus 160 ~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~ 239 (660)
.++..+|.++...|++++|+..+++++++.|. +.++...|++++|+..+++++..+|.++.++.
T Consensus 80 ~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~----------------~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~ 143 (258)
T 3uq3_A 80 KSFARIGNAYHKLGDLKKTIEYYQKSLTEHRT----------------ADILTKLRNAEKELKKAEAEAYVNPEKAEEAR 143 (258)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCC----------------HHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHH
T ss_pred HHHHHHHHHHHHcccHHHHHHHHHHHHhcCch----------------hHHHHHHhHHHHHHHHHHHHHHcCcchHHHHH
Confidence 89999999999999999999999999998875 23566678899999999999999999999999
Q ss_pred HHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhCCChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCC
Q 006120 240 LLGSALFGVGEYRAAVKALEEAIFIKPDYADAHCDLASALHAMGEDERAIEVFQKAIDLKPGHVDALYNLGGLYMDLGAG 319 (660)
Q Consensus 240 ~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~La~~~~~~~~g 319 (660)
.+|.++...|++++|+..+++++...|.++.++..+|.++...|++++|+.+++++++.+|+++.++..+|.++... |
T Consensus 144 ~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~~--g 221 (258)
T 3uq3_A 144 LEGKEYFTKSDWPNAVKAYTEMIKRAPEDARGYSNRAAALAKLMSFPEAIADCNKAIEKDPNFVRAYIRKATAQIAV--K 221 (258)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHT--T
T ss_pred HHHHHHHHhcCHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHH--h
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999 9
Q ss_pred CHHHHHHHHHHHHccc
Q 006120 320 ETEEAKKALKEALKMT 335 (660)
Q Consensus 320 ~~~eA~~~~~~al~l~ 335 (660)
++++|..++++++++.
T Consensus 222 ~~~~A~~~~~~a~~~~ 237 (258)
T 3uq3_A 222 EYASALETLDAARTKD 237 (258)
T ss_dssp CHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHhC
Confidence 9999999999999999
No 26
>3cv0_A Peroxisome targeting signal 1 receptor PEX5; TPR motifs, TPR protein, peroxin 5, PEX5, PTS1 binding domain, protein-peptide complex, receptor; 2.00A {Trypanosoma brucei} PDB: 3cvl_A 3cvn_A 3cvp_A 3cvq_A
Probab=99.91 E-value=9.8e-23 Score=209.87 Aligned_cols=245 Identities=17% Similarity=0.138 Sum_probs=218.5
Q ss_pred HHhHHHHHHHHHHHHHHHHHHHHHHHHHhhccCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHH
Q 006120 88 SEKRVFWEESTHDYAVFVKELGVLRNRADGARSREEAFDGHMAIGRVLYEHQLFKEALVSFKRACELQPTDVRPHFRAGN 167 (660)
Q Consensus 88 ~~~~~~l~~~~~~~g~~~~Al~~l~~a~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~ 167 (660)
...+...+..+...|++.+|+..++++++..+... .++..+|.++...|++++|+..++++++..|.+..++..+|.
T Consensus 21 ~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~---~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~ 97 (327)
T 3cv0_A 21 HENPMEEGLSMLKLANLAEAALAFEAVCQAAPERE---EAWRSLGLTQAENEKDGLAIIALNHARMLDPKDIAVHAALAV 97 (327)
T ss_dssp SSCHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCH---HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHH
T ss_pred hHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCCH---HHHHHHHHHHHHcCCHHHHHHHHHHHHhcCcCCHHHHHHHHH
Confidence 34556778889999999999999999999877654 788999999999999999999999999999999999999999
Q ss_pred HHHHcCCHHHHHHHHHHHHHHhccCCCchhch-----HHHHHHHH-HH-HHHHCCCHHHHHHHHHHHHHhCCCcHHHHHH
Q 006120 168 CLYVLGRYREAKEEYLLALEAAETGGNQWAYL-----LPQIYVNL-GI-ALEGEGMVLSACEYYRESAILCPTHFRALKL 240 (660)
Q Consensus 168 ~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~-----~~~~~~~l-a~-~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~ 240 (660)
++...|++++|+..++++++..|.....+... .......+ +. ++...|++++|+.+++++++..|.+..++..
T Consensus 98 ~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~ 177 (327)
T 3cv0_A 98 SHTNEHNANAALASLRAWLLSQPQYEQLGSVNLQADVDIDDLNVQSEDFFFAAPNEYRECRTLLHAALEMNPNDAQLHAS 177 (327)
T ss_dssp HHHHTTCHHHHHHHHHHHHHTSTTTTTC--------------------CCTTSHHHHHHHHHHHHHHHHHSTTCHHHHHH
T ss_pred HHHHcCCHHHHHHHHHHHHHhCCccHHHHHHHhHHHHHHHHHHHHHHhHHHHHcccHHHHHHHHHHHHhhCCCCHHHHHH
Confidence 99999999999999999999998854432210 00011122 44 5788899999999999999999999999999
Q ss_pred HHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhCCChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCCC
Q 006120 241 LGSALFGVGEYRAAVKALEEAIFIKPDYADAHCDLASALHAMGEDERAIEVFQKAIDLKPGHVDALYNLGGLYMDLGAGE 320 (660)
Q Consensus 241 lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~La~~~~~~~~g~ 320 (660)
+|.++...|++++|+..++++++..|+++.++..+|.++...|++++|+..++++++..|++..++..+|.++... |+
T Consensus 178 la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~--g~ 255 (327)
T 3cv0_A 178 LGVLYNLSNNYDSAAANLRRAVELRPDDAQLWNKLGATLANGNRPQEALDAYNRALDINPGYVRVMYNMAVSYSNM--SQ 255 (327)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHT--TC
T ss_pred HHHHHHHhccHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHh--cc
Confidence 9999999999999999999999999999999999999999999999999999999999999999999999999999 99
Q ss_pred HHHHHHHHHHHHcccCC
Q 006120 321 TEEAKKALKEALKMTNR 337 (660)
Q Consensus 321 ~~eA~~~~~~al~l~p~ 337 (660)
+++|+.++++++++.|.
T Consensus 256 ~~~A~~~~~~a~~~~~~ 272 (327)
T 3cv0_A 256 YDLAAKQLVRAIYMQVG 272 (327)
T ss_dssp HHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHhCCc
Confidence 99999999999999987
No 27
>2h6f_A Protein farnesyltransferase/geranylgeranyltransferase type I alpha subunit; ftase, farnesyltransferase, farnesyl transferase, prenyltransferase, CAAX, RAS, lipid modification, prenylation; HET: SUC FAR; 1.50A {Homo sapiens} SCOP: a.118.6.1 PDB: 1jcq_A* 1ld7_A* 1mzc_A* 1s63_A* 1sa4_A* 1tn6_A* 1ld8_A* 2h6g_A* 2h6h_A* 2h6i_A* 2iej_A* 3e37_A* 2f0y_A* 3ksl_A* 2zir_A* 2zis_A* 1o5m_A* 3ksq_A* 1o1t_A* 1o1s_A* ...
Probab=99.91 E-value=2.1e-23 Score=220.68 Aligned_cols=258 Identities=10% Similarity=-0.005 Sum_probs=235.1
Q ss_pred hhcCCcchhhccCchHHHHhccCchhhHHHHHHHHHHHHhhccCCcCCchHHhhhHHHHHHhCCchHHHHhHHHHHHHHH
Q 006120 20 KKQRTAAWAVSPNHGIVFDDTWKIVDDLEILVKRLKAKQAKDGKLKGDNSDAFSDAGWSRELGTSAEISEKRVFWEESTH 99 (660)
Q Consensus 20 ~~~~p~~~~~~~~lg~~y~~~~~~~~al~~~~~~~~~a~~~~~~l~~~~~~a~~~~~~~~~l~~~~~~~~~~~~l~~~~~ 99 (660)
...+|....++.++|.++...+++.+|+..+.++++ +.|+.. .++..++.++.
T Consensus 90 i~~~p~~~~a~~~lg~~~~~~g~~~~Al~~~~~al~--------l~P~~~-------------------~a~~~~g~~l~ 142 (382)
T 2h6f_A 90 IIYSDKFRDVYDYFRAVLQRDERSERAFKLTRDAIE--------LNAANY-------------------TVWHFRRVLLK 142 (382)
T ss_dssp ECCCHHHHHHHHHHHHHHHHTCCCHHHHHHHHHHHH--------HCTTCH-------------------HHHHHHHHHHH
T ss_pred hhCChhhHHHHHHHHHHHHHCCChHHHHHHHHHHHH--------hCccCH-------------------HHHHHHHHHHH
Confidence 456788899999999999999999999999999998 355544 34456677888
Q ss_pred HHHH-HHHHHHHHHHHHhhccCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHH
Q 006120 100 DYAV-FVKELGVLRNRADGARSREEAFDGHMAIGRVLYEHQLFKEALVSFKRACELQPTDVRPHFRAGNCLYVLGRYREA 178 (660)
Q Consensus 100 ~~g~-~~~Al~~l~~a~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A 178 (660)
..|+ +++|+..+++++...++.. .+|+.+|.++...|++++|+..|+++++++|++..+|+++|.++..+|++++|
T Consensus 143 ~~g~d~~eAl~~~~~al~l~P~~~---~a~~~~g~~~~~~g~~~eAl~~~~kal~ldP~~~~a~~~lg~~~~~~g~~~eA 219 (382)
T 2h6f_A 143 SLQKDLHEEMNYITAIIEEQPKNY---QVWHHRRVLVEWLRDPSQELEFIADILNQDAKNYHAWQHRQWVIQEFKLWDNE 219 (382)
T ss_dssp HTTCCHHHHHHHHHHHHHHCTTCH---HHHHHHHHHHHHHTCCTTHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCCTTH
T ss_pred HcccCHHHHHHHHHHHHHHCCCCH---HHHHHHHHHHHHccCHHHHHHHHHHHHHhCccCHHHHHHHHHHHHHcCChHHH
Confidence 8997 9999999999999888775 89999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHhccCCCchhchHHHHHHHHHHHHHH-CCCHHHH-----HHHHHHHHHhCCCcHHHHHHHHHHHHHCC--C
Q 006120 179 KEEYLLALEAAETGGNQWAYLLPQIYVNLGIALEG-EGMVLSA-----CEYYRESAILCPTHFRALKLLGSALFGVG--E 250 (660)
Q Consensus 179 ~~~~~~al~~~p~~~~~~~~~~~~~~~~la~~~~~-~g~~~~A-----~~~~~~al~~~p~~~~~~~~lg~~~~~~g--~ 250 (660)
+..|+++++++|. ...+|+++|.++.. .|.+++| +.+|++++.++|++..+|.++|.++...| +
T Consensus 220 l~~~~~al~l~P~--------~~~a~~~lg~~l~~l~~~~~eA~~~~el~~~~~Al~l~P~~~~a~~~l~~ll~~~g~~~ 291 (382)
T 2h6f_A 220 LQYVDQLLKEDVR--------NNSVWNQRYFVISNTTGYNDRAVLEREVQYTLEMIKLVPHNESAWNYLKGILQDRGLSK 291 (382)
T ss_dssp HHHHHHHHHHCTT--------CHHHHHHHHHHHHHTTCSCSHHHHHHHHHHHHHHHHHSTTCHHHHHHHHHHHTTTCGGG
T ss_pred HHHHHHHHHhCCC--------CHHHHHHHHHHHHHhcCcchHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHccCccc
Confidence 9999999999999 88999999999999 5665788 59999999999999999999999999988 6
Q ss_pred HHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhCC--------C-hHHHHHHHHHH-HHhCCCCHHHHHHHHHHHHHh
Q 006120 251 YRAAVKALEEAIFIKPDYADAHCDLASALHAMG--------E-DERAIEVFQKA-IDLKPGHVDALYNLGGLYMDL 316 (660)
Q Consensus 251 ~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g--------~-~~~A~~~~~~a-l~~~p~~~~a~~~La~~~~~~ 316 (660)
+++|+..++++ +.+|++..++..+|.+|..+| + +++|+.+|+++ ++++|.....|..++..+..+
T Consensus 292 ~~~a~~~~~~~-~~~p~~~~al~~La~~~~~~~~~~~~~~~~~~~~A~~~~~~l~~~~DP~r~~~w~~~~~~l~~~ 366 (382)
T 2h6f_A 292 YPNLLNQLLDL-QPSHSSPYLIAFLVDIYEDMLENQCDNKEDILNKALELCEILAKEKDTIRKEYWRYIGRSLQSK 366 (382)
T ss_dssp CHHHHHHHHHH-TTTCCCHHHHHHHHHHHHHHHHTTCSSHHHHHHHHHHHHHHHHHTTCGGGHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHh-ccCCCCHHHHHHHHHHHHHHhcccccchHHHHHHHHHHHHHHHHHhCchhHHHHHHHHHHHHHH
Confidence 99999999998 999999999999999999874 2 59999999999 999999999999999888754
No 28
>3u4t_A TPR repeat-containing protein; structural genomics, PSI- protein structure initiative, northeast structural genomics consortium, NESG; 2.28A {Cytophaga hutchinsonii}
Probab=99.91 E-value=6.1e-23 Score=206.21 Aligned_cols=236 Identities=16% Similarity=0.103 Sum_probs=215.2
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHhhccCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC----HHHHHHH
Q 006120 90 KRVFWEESTHDYAVFVKELGVLRNRADGARSREEAFDGHMAIGRVLYEHQLFKEALVSFKRACELQPTD----VRPHFRA 165 (660)
Q Consensus 90 ~~~~l~~~~~~~g~~~~Al~~l~~a~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~----~~~~~~l 165 (660)
.....+..+...|++++|+..++++++..+... .++..+|.++...|++++|+..++++++ .|.+ ..++..+
T Consensus 5 ~~~~~a~~~~~~~~~~~A~~~~~~~l~~~p~~~---~~~~~l~~~~~~~~~~~~A~~~~~~a~~-~~~~~~~~~~~~~~l 80 (272)
T 3u4t_A 5 VEFRYADFLFKNNNYAEAIEVFNKLEAKKYNSP---YIYNRRAVCYYELAKYDLAQKDIETYFS-KVNATKAKSADFEYY 80 (272)
T ss_dssp CHHHHHHHHHTTTCHHHHHHHHHHHHHTTCCCS---TTHHHHHHHHHHTTCHHHHHHHHHHHHT-TSCTTTCCHHHHHHH
T ss_pred HHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCcH---HHHHHHHHHHHHHhhHHHHHHHHHHHHh-ccCchhHHHHHHHHH
Confidence 455668888999999999999999999887664 6789999999999999999999999999 4333 5569999
Q ss_pred HHHHHHcCCHHHHHHHHHHHHHHhccCCCchhchHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHH
Q 006120 166 GNCLYVLGRYREAKEEYLLALEAAETGGNQWAYLLPQIYVNLGIALEGEGMVLSACEYYRESAILCPTHFRALKLLGSAL 245 (660)
Q Consensus 166 a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~ 245 (660)
|.++...|++++|+..++++++..|. .+.++..+|.++...|++++|+.+++++++.+|.++.++..+|...
T Consensus 81 g~~~~~~~~~~~A~~~~~~a~~~~~~--------~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~l~~~~ 152 (272)
T 3u4t_A 81 GKILMKKGQDSLAIQQYQAAVDRDTT--------RLDMYGQIGSYFYNKGNFPLAIQYMEKQIRPTTTDPKVFYELGQAY 152 (272)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHSTT--------CTHHHHHHHHHHHHTTCHHHHHHHHGGGCCSSCCCHHHHHHHHHHH
T ss_pred HHHHHHcccHHHHHHHHHHHHhcCcc--------cHHHHHHHHHHHHHccCHHHHHHHHHHHhhcCCCcHHHHHHHHHHH
Confidence 99999999999999999999999998 6789999999999999999999999999999999999999999555
Q ss_pred HHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhCCC---hHHHHHHHHHHHHhC---CC-----CHHHHHHHHHHHH
Q 006120 246 FGVGEYRAAVKALEEAIFIKPDYADAHCDLASALHAMGE---DERAIEVFQKAIDLK---PG-----HVDALYNLGGLYM 314 (660)
Q Consensus 246 ~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~---~~~A~~~~~~al~~~---p~-----~~~a~~~La~~~~ 314 (660)
...+++++|+..+++++++.|++..++..+|.++..+|+ +++|+..+++++++. |+ ...++..+|.+|.
T Consensus 153 ~~~~~~~~A~~~~~~a~~~~p~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~ 232 (272)
T 3u4t_A 153 YYNKEYVKADSSFVKVLELKPNIYIGYLWRARANAAQDPDTKQGLAKPYYEKLIEVCAPGGAKYKDELIEANEYIAYYYT 232 (272)
T ss_dssp HHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHSTTCSSCTTHHHHHHHHHHHGGGGGGGHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHhCccchHHHHHHHHHHHHcCcchhhHHHHHHHHHHHHHHhcccccchHHHHHHHHHHHHHHH
Confidence 556699999999999999999999999999999999999 999999999999986 44 2368999999999
Q ss_pred HhcCCCHHHHHHHHHHHHcccCChh
Q 006120 315 DLGAGETEEAKKALKEALKMTNRVE 339 (660)
Q Consensus 315 ~~~~g~~~eA~~~~~~al~l~p~~~ 339 (660)
.. |++++|+.+|+++++++|+..
T Consensus 233 ~~--~~~~~A~~~~~~al~~~p~~~ 255 (272)
T 3u4t_A 233 IN--RDKVKADAAWKNILALDPTNK 255 (272)
T ss_dssp HT--TCHHHHHHHHHHHHHHCTTCH
T ss_pred Hc--CCHHHHHHHHHHHHhcCccHH
Confidence 98 999999999999999999754
No 29
>2pl2_A Hypothetical conserved protein TTC0263; TPR, protein binding; 2.50A {Thermus thermophilus}
Probab=99.91 E-value=7.1e-23 Score=199.63 Aligned_cols=197 Identities=14% Similarity=0.074 Sum_probs=174.8
Q ss_pred HHhHHHHHHHHHHHHHHHHHHHHHHHHHhhccCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHH
Q 006120 88 SEKRVFWEESTHDYAVFVKELGVLRNRADGARSREEAFDGHMAIGRVLYEHQLFKEALVSFKRACELQPTDVRPHFRAGN 167 (660)
Q Consensus 88 ~~~~~~l~~~~~~~g~~~~Al~~l~~a~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~ 167 (660)
...+..++.++...|++++|+..++++++..|+.+ .+++.+|.++...|++++|+..|+++++.+|+++.++..+|.
T Consensus 5 ~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~---~a~~~lg~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~lg~ 81 (217)
T 2pl2_A 5 EQNPLRLGVQLYALGRYDAALTLFERALKENPQDP---EALYWLARTQLKLGLVNPALENGKTLVARTPRYLGGYMVLSE 81 (217)
T ss_dssp CHHHHHHHHHHHHTTCHHHHHHHHHHHHTTSSSCH---HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCH---HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHH
Confidence 34566778899999999999999999999888775 889999999999999999999999999999999999999999
Q ss_pred HHHHc-----------CCHHHHHHHHHHHHHHhccCCCchhchHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCcHH
Q 006120 168 CLYVL-----------GRYREAKEEYLLALEAAETGGNQWAYLLPQIYVNLGIALEGEGMVLSACEYYRESAILCPTHFR 236 (660)
Q Consensus 168 ~~~~~-----------g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~ 236 (660)
++... |++++|+..++++++++|+ .+.++.++|.++..+|++++|+..|+++++++ +++.
T Consensus 82 ~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~P~--------~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-~~~~ 152 (217)
T 2pl2_A 82 AYVALYRQAEDRERGKGYLEQALSVLKDAERVNPR--------YAPLHLQRGLVYALLGERDKAEASLKQALALE-DTPE 152 (217)
T ss_dssp HHHHHHHTCSSHHHHHHHHHHHHHHHHHHHHHCTT--------CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-CCHH
T ss_pred HHHHhhhhhhhhcccccCHHHHHHHHHHHHHhCcc--------cHHHHHHHHHHHHHcCChHHHHHHHHHHHhcc-cchH
Confidence 99999 9999999999999999998 78999999999999999999999999999999 9999
Q ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhCCChHHHHHHHHHHH
Q 006120 237 ALKLLGSALFGVGEYRAAVKALEEAIFIKPDYADAHCDLASALHAMGEDERAIEVFQKAI 296 (660)
Q Consensus 237 ~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al 296 (660)
++.++|.++...|++++|+..|+++++++|+++.++.++|.++..+|++++|+..++++-
T Consensus 153 ~~~~la~~~~~~g~~~~A~~~~~~al~~~P~~~~~~~~la~~~~~~g~~~~A~~~~~~~~ 212 (217)
T 2pl2_A 153 IRSALAELYLSMGRLDEALAQYAKALEQAPKDLDLRVRYASALLLKGKAEEAARAAALEH 212 (217)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHTC---------------
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHccCHHHHHHHHHHHh
Confidence 999999999999999999999999999999999999999999999999999999998864
No 30
>3mkr_A Coatomer subunit epsilon; tetratricopeptide repeats (TPR), beta-hairpin, alpha-solenoi transport protein; 2.60A {Bos taurus}
Probab=99.90 E-value=1.9e-21 Score=198.55 Aligned_cols=234 Identities=15% Similarity=0.027 Sum_probs=207.2
Q ss_pred HHhHHHHHHHHHHHHHHHHHHHHHHHHHhhccCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCCCHHHHHHH
Q 006120 88 SEKRVFWEESTHDYAVFVKELGVLRNRADGARSREEAFDGHMAIGRVLYEHQLFKEALVSFKRACEL--QPTDVRPHFRA 165 (660)
Q Consensus 88 ~~~~~~l~~~~~~~g~~~~Al~~l~~a~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~--~p~~~~~~~~l 165 (660)
.+....++.++...|+++.|+..++. .+ +....++..++..+...+++++|+..+++++.. +|+++.+++.+
T Consensus 34 ~e~~~~l~r~yi~~g~~~~al~~~~~-----~~-~~~~~a~~~la~~~~~~~~~~~A~~~l~~ll~~~~~P~~~~~~~~l 107 (291)
T 3mkr_A 34 VERDVFLYRAYLAQRKYGVVLDEIKP-----SS-APELQAVRMFAEYLASHSRRDAIVAELDREMSRSVDVTNTTFLLMA 107 (291)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHSCT-----TS-CHHHHHHHHHHHHHHCSTTHHHHHHHHHHHHHSCCCCSCHHHHHHH
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHhcc-----cC-ChhHHHHHHHHHHHcCCCcHHHHHHHHHHHHhcccCCCCHHHHHHH
Confidence 35667778899999999999987754 13 335688899999999999999999999999986 59999999999
Q ss_pred HHHHHHcCCHHHHHHHHHHHHHHhccCCCchhchHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCcHHHHHHHH--H
Q 006120 166 GNCLYVLGRYREAKEEYLLALEAAETGGNQWAYLLPQIYVNLGIALEGEGMVLSACEYYRESAILCPTHFRALKLLG--S 243 (660)
Q Consensus 166 a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg--~ 243 (660)
|.++...|++++|+..+++ |. ...++..+|.++..+|++++|+..++++++.+|++.......+ .
T Consensus 108 a~~~~~~g~~~~Al~~l~~-----~~--------~~~~~~~l~~~~~~~g~~~~A~~~l~~~~~~~p~~~~~~l~~a~~~ 174 (291)
T 3mkr_A 108 ASIYFYDQNPDAALRTLHQ-----GD--------SLECMAMTVQILLKLDRLDLARKELKKMQDQDEDATLTQLATAWVS 174 (291)
T ss_dssp HHHHHHTTCHHHHHHHHTT-----CC--------SHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred HHHHHHCCCHHHHHHHHhC-----CC--------CHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCcCcHHHHHHHHHHH
Confidence 9999999999999999988 44 6789999999999999999999999999999999865444333 4
Q ss_pred HHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhCCChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCCCHHH
Q 006120 244 ALFGVGEYRAAVKALEEAIFIKPDYADAHCDLASALHAMGEDERAIEVFQKAIDLKPGHVDALYNLGGLYMDLGAGETEE 323 (660)
Q Consensus 244 ~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~La~~~~~~~~g~~~e 323 (660)
++...|++++|+..|+++++..|+++.+++++|.++..+|++++|+..++++++++|+++.++.++|.++... |+.++
T Consensus 175 l~~~~~~~~eA~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~eA~~~l~~al~~~p~~~~~l~~l~~~~~~~--g~~~e 252 (291)
T 3mkr_A 175 LAAGGEKLQDAYYIFQEMADKCSPTLLLLNGQAACHMAQGRWEAAEGVLQEALDKDSGHPETLINLVVLSQHL--GKPPE 252 (291)
T ss_dssp HHHCTTHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHT--TCCHH
T ss_pred HHhCchHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHc--CCCHH
Confidence 4456699999999999999999999999999999999999999999999999999999999999999999998 88876
Q ss_pred -HHHHHHHHHcccCChhHHH
Q 006120 324 -AKKALKEALKMTNRVELHD 342 (660)
Q Consensus 324 -A~~~~~~al~l~p~~~~~~ 342 (660)
+..+++++++++|+.....
T Consensus 253 aa~~~~~~~~~~~P~~~~~~ 272 (291)
T 3mkr_A 253 VTNRYLSQLKDAHRSHPFIK 272 (291)
T ss_dssp HHHHHHHHHHHHCTTCHHHH
T ss_pred HHHHHHHHHHHhCCCChHHH
Confidence 6789999999999865533
No 31
>3vtx_A MAMA; tetratricopeptide repeats (TPR) containing protein, peptide protein, protein binding; 1.75A {Candidatus magnetobacterium bavaricum} PDB: 3vty_A
Probab=99.90 E-value=4.3e-22 Score=188.03 Aligned_cols=171 Identities=22% Similarity=0.230 Sum_probs=135.0
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhccCCCchhchHHHHH
Q 006120 125 FDGHMAIGRVLYEHQLFKEALVSFKRACELQPTDVRPHFRAGNCLYVLGRYREAKEEYLLALEAAETGGNQWAYLLPQIY 204 (660)
Q Consensus 125 ~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~ 204 (660)
..+|+.+|.++..+|++++|+..|+++++++|+++.++..+|.++...|++++|+..+.+++...|. .+.++
T Consensus 5 ~~iy~~lG~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~a~~~~~~~~~~~~~--------~~~~~ 76 (184)
T 3vtx_A 5 TTIYMDIGDKKRTKGDFDGAIRAYKKVLKADPNNVETLLKLGKTYMDIGLPNDAIESLKKFVVLDTT--------SAEAY 76 (184)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCC--------CHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCch--------hHHHH
Confidence 3667778888888888888888888888888888888888888888888888888888888777777 66777
Q ss_pred HHHHHHHHHCCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhCCC
Q 006120 205 VNLGIALEGEGMVLSACEYYRESAILCPTHFRALKLLGSALFGVGEYRAAVKALEEAIFIKPDYADAHCDLASALHAMGE 284 (660)
Q Consensus 205 ~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~ 284 (660)
..+|.++...+++++|...+.+++...|.+..++..+|.++..+|++++|+..|+++++++|+++.+|.++|.+|..+|+
T Consensus 77 ~~~~~~~~~~~~~~~a~~~~~~a~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~lg~~~~~~g~ 156 (184)
T 3vtx_A 77 YILGSANFMIDEKQAAIDALQRAIALNTVYADAYYKLGLVYDSMGEHDKAIEAYEKTISIKPGFIRAYQSIGLAYEGKGL 156 (184)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHhCccchHHHHHHHHHHHHhCCchhHHHHHHHHHHhcchhhhHHHHHHHHHHHCCC
Confidence 77777777788888888888888887887777777788888888888888888888888888777778888888888888
Q ss_pred hHHHHHHHHHHHHhCCCCH
Q 006120 285 DERAIEVFQKAIDLKPGHV 303 (660)
Q Consensus 285 ~~~A~~~~~~al~~~p~~~ 303 (660)
+++|+.+|+++++++|+++
T Consensus 157 ~~~A~~~~~~al~~~p~~a 175 (184)
T 3vtx_A 157 RDEAVKYFKKALEKEEKKA 175 (184)
T ss_dssp HHHHHHHHHHHHHTTHHHH
T ss_pred HHHHHHHHHHHHhCCccCH
Confidence 8888888888877777643
No 32
>3uq3_A Heat shock protein STI1; HSP90, peptide binding, chaperone; 2.60A {Saccharomyces cerevisiae}
Probab=99.90 E-value=8.3e-22 Score=195.55 Aligned_cols=244 Identities=13% Similarity=0.055 Sum_probs=221.4
Q ss_pred cchhhccCchHHHHhccCchhhHHHHHHHHHHHHhhccCCcCCchHHhhhHHHHHHhCCchHHHHhHHHHHHHHHHHHHH
Q 006120 25 AAWAVSPNHGIVFDDTWKIVDDLEILVKRLKAKQAKDGKLKGDNSDAFSDAGWSRELGTSAEISEKRVFWEESTHDYAVF 104 (660)
Q Consensus 25 ~~~~~~~~lg~~y~~~~~~~~al~~~~~~~~~a~~~~~~l~~~~~~a~~~~~~~~~l~~~~~~~~~~~~l~~~~~~~g~~ 104 (660)
..+.++..+|.++...+++.+++..+.+.++. . .. ...+..++.++...|++
T Consensus 3 ~~a~~~~~~g~~~~~~~~~~~A~~~~~~a~~~--------~-~~-------------------~~~~~~~~~~~~~~~~~ 54 (258)
T 3uq3_A 3 SMADKEKAEGNKFYKARQFDEAIEHYNKAWEL--------H-KD-------------------ITYLNNRAAAEYEKGEY 54 (258)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--------S-CC-------------------THHHHHHHHHHHHTTCH
T ss_pred hHHHHHHHHHHHHHHhccHHHHHHHHHHHHHh--------h-cc-------------------HHHHHHHHHHHHHcccH
Confidence 45678889999999999999999999999984 1 11 23456668888999999
Q ss_pred HHHHHHHHHHHhhccCc----HHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHH
Q 006120 105 VKELGVLRNRADGARSR----EEAFDGHMAIGRVLYEHQLFKEALVSFKRACELQPTDVRPHFRAGNCLYVLGRYREAKE 180 (660)
Q Consensus 105 ~~Al~~l~~a~~~~~~~----~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~ 180 (660)
++|+..++++++..+.. +....++..+|.++...|++++|+.+|+++++..|. +.++...|++++|+.
T Consensus 55 ~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~--------~~~~~~~~~~~~a~~ 126 (258)
T 3uq3_A 55 ETAISTLNDAVEQGREMRADYKVISKSFARIGNAYHKLGDLKKTIEYYQKSLTEHRT--------ADILTKLRNAEKELK 126 (258)
T ss_dssp HHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCC--------HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCcccccchHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHhcCch--------hHHHHHHhHHHHHHH
Confidence 99999999999876633 223688999999999999999999999999999987 567888899999999
Q ss_pred HHHHHHHHhccCCCchhchHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHCCCHHHHHHHHHH
Q 006120 181 EYLLALEAAETGGNQWAYLLPQIYVNLGIALEGEGMVLSACEYYRESAILCPTHFRALKLLGSALFGVGEYRAAVKALEE 260 (660)
Q Consensus 181 ~~~~al~~~p~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~ 260 (660)
.+++++...|. .+.++..+|.++...|++++|+.++++++...|.++.++..+|.++...|++++|+..+++
T Consensus 127 ~~~~~~~~~~~--------~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~ 198 (258)
T 3uq3_A 127 KAEAEAYVNPE--------KAEEARLEGKEYFTKSDWPNAVKAYTEMIKRAPEDARGYSNRAAALAKLMSFPEAIADCNK 198 (258)
T ss_dssp HHHHHHHCCHH--------HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred HHHHHHHcCcc--------hHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHhCCHHHHHHHHHH
Confidence 99999999998 8899999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHhCCCCHHHHHHHHHHHHhCCChHHHHHHHHHHHHhC------CCCHHHHHHHHHH
Q 006120 261 AIFIKPDYADAHCDLASALHAMGEDERAIEVFQKAIDLK------PGHVDALYNLGGL 312 (660)
Q Consensus 261 al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~------p~~~~a~~~La~~ 312 (660)
+++..|+++.++..+|.++..+|++++|+.+++++++++ |++..++..++.+
T Consensus 199 al~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~p~~~~~~~~l~~~ 256 (258)
T 3uq3_A 199 AIEKDPNFVRAYIRKATAQIAVKEYASALETLDAARTKDAEVNNGSSAREIDQLYYKA 256 (258)
T ss_dssp HHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHTTTTHHHHHHHHHHT
T ss_pred HHHhCHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhChhhcCCCchHHHHHHHHHh
Confidence 999999999999999999999999999999999999999 8888888877764
No 33
>2ho1_A Type 4 fimbrial biogenesis protein PILF; type IV pilus biogenesis, TPR, superhelix, protein binding; HET: MSE; 2.00A {Pseudomonas aeruginosa} PDB: 2fi7_A
Probab=99.90 E-value=2.4e-21 Score=192.31 Aligned_cols=211 Identities=17% Similarity=0.117 Sum_probs=200.7
Q ss_pred CcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhccCCCchhch
Q 006120 120 SREEAFDGHMAIGRVLYEHQLFKEALVSFKRACELQPTDVRPHFRAGNCLYVLGRYREAKEEYLLALEAAETGGNQWAYL 199 (660)
Q Consensus 120 ~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~ 199 (660)
++.....+++.+|.++...|++++|+.+|+++++..|.+..++..+|.++...|++++|+..++++++..|.
T Consensus 32 ~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~-------- 103 (252)
T 2ho1_A 32 GRDEARDAYIQLGLGYLQRGNTEQAKVPLRKALEIDPSSADAHAALAVVFQTEMEPKLADEEYRKALASDSR-------- 103 (252)
T ss_dssp CHHHHHHHHHHHHHHHHHTTCTGGGHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT--------
T ss_pred chHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCChHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcC--------
Confidence 334447899999999999999999999999999999999999999999999999999999999999999987
Q ss_pred HHHHHHHHHHHHHHCCCHHHHHHHHHHHHH--hCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHH
Q 006120 200 LPQIYVNLGIALEGEGMVLSACEYYRESAI--LCPTHFRALKLLGSALFGVGEYRAAVKALEEAIFIKPDYADAHCDLAS 277 (660)
Q Consensus 200 ~~~~~~~la~~~~~~g~~~~A~~~~~~al~--~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~ 277 (660)
...++..+|.++...|++++|+.++++++. ..|.+..++..+|.++...|++++|+..++++++..|.+..++..+|.
T Consensus 104 ~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~la~ 183 (252)
T 2ho1_A 104 NARVLNNYGGFLYEQKRYEEAYQRLLEASQDTLYPERSRVFENLGLVSLQMKKPAQAKEYFEKSLRLNRNQPSVALEMAD 183 (252)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHTTCTTCTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSCCHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHHhHHHHHHHHHHHHHhCccCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCcccHHHHHHHHH
Confidence 678999999999999999999999999999 889999999999999999999999999999999999999999999999
Q ss_pred HHHhCCChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHcccCChhH
Q 006120 278 ALHAMGEDERAIEVFQKAIDLKPGHVDALYNLGGLYMDLGAGETEEAKKALKEALKMTNRVEL 340 (660)
Q Consensus 278 ~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~La~~~~~~~~g~~~eA~~~~~~al~l~p~~~~ 340 (660)
++...|++++|+.+++++++..|.+..++..++.++... |++++|..++++++++.|+...
T Consensus 184 ~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~--g~~~~A~~~~~~~~~~~p~~~~ 244 (252)
T 2ho1_A 184 LLYKEREYVPARQYYDLFAQGGGQNARSLLLGIRLAKVF--EDRDTAASYGLQLKRLYPGSLE 244 (252)
T ss_dssp HHHHTTCHHHHHHHHHHHHTTSCCCHHHHHHHHHHHHHT--TCHHHHHHHHHHHHHHCTTSHH
T ss_pred HHHHcCCHHHHHHHHHHHHHhCcCcHHHHHHHHHHHHHc--cCHHHHHHHHHHHHHHCCCCHH
Confidence 999999999999999999999999999999999999998 9999999999999999987543
No 34
>2q7f_A YRRB protein; TPR, protein binding; 2.49A {Bacillus subtilis} SCOP: k.38.1.1
Probab=99.89 E-value=4.1e-22 Score=196.24 Aligned_cols=206 Identities=21% Similarity=0.210 Sum_probs=169.9
Q ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhccCCCchhchHHHH
Q 006120 124 AFDGHMAIGRVLYEHQLFKEALVSFKRACELQPTDVRPHFRAGNCLYVLGRYREAKEEYLLALEAAETGGNQWAYLLPQI 203 (660)
Q Consensus 124 ~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~ 203 (660)
....++.+|..+...|++++|+.+|+++++..|.+..++..+|.++...|++++|+..++++++..|. ...+
T Consensus 22 ~~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~--------~~~~ 93 (243)
T 2q7f_A 22 ASMTGGQQMGRGSEFGDYEKAAEAFTKAIEENKEDAIPYINFANLLSSVNELERALAFYDKALELDSS--------AATA 93 (243)
T ss_dssp --------------------CCTTHHHHHTTCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT--------CHHH
T ss_pred HHHHHHHHHHHHHHhhCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCc--------chHH
Confidence 34678889999999999999999999999999999999999999999999999999999999998887 6788
Q ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhCC
Q 006120 204 YVNLGIALEGEGMVLSACEYYRESAILCPTHFRALKLLGSALFGVGEYRAAVKALEEAIFIKPDYADAHCDLASALHAMG 283 (660)
Q Consensus 204 ~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g 283 (660)
+..+|.++...|++++|+.+++++++..|.+..++..+|.++...|++++|+..++++++..|++..++..+|.++...|
T Consensus 94 ~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~ 173 (243)
T 2q7f_A 94 YYGAGNVYVVKEMYKEAKDMFEKALRAGMENGDLFYMLGTVLVKLEQPKLALPYLQRAVELNENDTEARFQFGMCLANEG 173 (243)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHTCCSHHHHHHHHHHHHHTSCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHhccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHcC
Confidence 88999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHcccCChh
Q 006120 284 EDERAIEVFQKAIDLKPGHVDALYNLGGLYMDLGAGETEEAKKALKEALKMTNRVE 339 (660)
Q Consensus 284 ~~~~A~~~~~~al~~~p~~~~a~~~La~~~~~~~~g~~~eA~~~~~~al~l~p~~~ 339 (660)
++++|+..++++++..|+++.++..+|.++... |++++|..++++++++.|+..
T Consensus 174 ~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~--~~~~~A~~~~~~~~~~~p~~~ 227 (243)
T 2q7f_A 174 MLDEALSQFAAVTEQDPGHADAFYNAGVTYAYK--ENREKALEMLDKAIDIQPDHM 227 (243)
T ss_dssp CCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHT--TCTTHHHHHHHHHHHHCTTCH
T ss_pred CHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHc--cCHHHHHHHHHHHHccCcchH
Confidence 999999999999999999999999999999988 999999999999999988743
No 35
>4a1s_A PINS, partner of inscuteable; cell cycle, LGN, mitotic spindle orientation, asymmetric CEL divisions; 2.10A {Drosophila melanogaster}
Probab=99.89 E-value=2.6e-22 Score=214.50 Aligned_cols=289 Identities=17% Similarity=0.167 Sum_probs=248.9
Q ss_pred CcchhhccCchHHHHhccCchhhHHHHHHHHHHHHhhccCCcCCchHHhhhHHHHHHhCCchHHHHhHHHHHHHHHHHHH
Q 006120 24 TAAWAVSPNHGIVFDDTWKIVDDLEILVKRLKAKQAKDGKLKGDNSDAFSDAGWSRELGTSAEISEKRVFWEESTHDYAV 103 (660)
Q Consensus 24 p~~~~~~~~lg~~y~~~~~~~~al~~~~~~~~~a~~~~~~l~~~~~~a~~~~~~~~~l~~~~~~~~~~~~l~~~~~~~g~ 103 (660)
+.....+..+|..+...|++.+++..+.++++. .+... ......+..++.++...|+
T Consensus 45 ~~~~~~l~~~g~~~~~~g~~~~A~~~~~~al~~--------~~~~~---------------~~~~~~~~~lg~~~~~~g~ 101 (411)
T 4a1s_A 45 SSMCLELALEGERLCNAGDCRAGVAFFQAAIQA--------GTEDL---------------RTLSAIYSQLGNAYFYLGD 101 (411)
T ss_dssp HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--------CCSCH---------------HHHHHHHHHHHHHHHHHTC
T ss_pred hHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHh--------cccCh---------------hHHHHHHHHHHHHHHHCCC
Confidence 566677789999999999999999999999983 22221 1223456677889999999
Q ss_pred HHHHHHHHHHHHhhc---cCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh------CCCCHHHHHHHHHHHHHcCC
Q 006120 104 FVKELGVLRNRADGA---RSREEAFDGHMAIGRVLYEHQLFKEALVSFKRACEL------QPTDVRPHFRAGNCLYVLGR 174 (660)
Q Consensus 104 ~~~Al~~l~~a~~~~---~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~------~p~~~~~~~~la~~~~~~g~ 174 (660)
+.+|+..+++++... .+.+....++..+|.++...|++++|+.+|+++++. .+....++..+|.++...|+
T Consensus 102 ~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~ 181 (411)
T 4a1s_A 102 YNKAMQYHKHDLTLAKSMNDRLGEAKSSGNLGNTLKVMGRFDEAAICCERHLTLARQLGDRLSEGRALYNLGNVYHAKGK 181 (411)
T ss_dssp HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHccCchHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHhhchHHHHHHHHHHHHHHHHcCc
Confidence 999999999998764 345677789999999999999999999999999998 45567899999999999999
Q ss_pred -----------------HHHHHHHHHHHHHHhccCCCchhchHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCc---
Q 006120 175 -----------------YREAKEEYLLALEAAETGGNQWAYLLPQIYVNLGIALEGEGMVLSACEYYRESAILCPTH--- 234 (660)
Q Consensus 175 -----------------~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~--- 234 (660)
+++|+.++++++++.+....... ...++..+|.++...|++++|+.++++++++.+..
T Consensus 182 ~~~~~~~~~~~~~a~~~~~~A~~~~~~al~~~~~~~~~~~--~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~ 259 (411)
T 4a1s_A 182 HLGQRNPGKFGDDVKEALTRAVEFYQENLKLMRDLGDRGA--QGRACGNLGNTYYLLGDFQAAIEHHQERLRIAREFGDR 259 (411)
T ss_dssp HHHHHSTTCCCHHHHHHHHHHHHHHHHHHHHHHHHTCHHH--HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCH
T ss_pred ccccccchhhhhhhhHHHHHHHHHHHHHHHHHHHcCCHHH--HHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHhcCCc
Confidence 99999999999998765544333 67899999999999999999999999999987654
Q ss_pred ---HHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCC------HHHHHHHHHHHHhCCChHHHHHHHHHHHHhCCCC---
Q 006120 235 ---FRALKLLGSALFGVGEYRAAVKALEEAIFIKPDY------ADAHCDLASALHAMGEDERAIEVFQKAIDLKPGH--- 302 (660)
Q Consensus 235 ---~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~------~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~--- 302 (660)
..++..+|.++...|++++|+.++++++.+.+.. ..++..+|.++..+|++++|+.++++++.+.+..
T Consensus 260 ~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~ 339 (411)
T 4a1s_A 260 AAERRANSNLGNSHIFLGQFEDAAEHYKRTLALAVELGEREVEAQSCYSLGNTYTLLHEFNTAIEYHNRHLAIAQELGDR 339 (411)
T ss_dssp HHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCH
T ss_pred HHHHHHHHHHHHHHHHCcCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHCCCh
Confidence 3389999999999999999999999999987644 6789999999999999999999999999885432
Q ss_pred ---HHHHHHHHHHHHHhcCCCHHHHHHHHHHHHcccCChh
Q 006120 303 ---VDALYNLGGLYMDLGAGETEEAKKALKEALKMTNRVE 339 (660)
Q Consensus 303 ---~~a~~~La~~~~~~~~g~~~eA~~~~~~al~l~p~~~ 339 (660)
..++..+|.++..+ |++++|..++++++++.+...
T Consensus 340 ~~~~~~~~~la~~~~~~--g~~~~A~~~~~~al~~~~~~~ 377 (411)
T 4a1s_A 340 IGEARACWSLGNAHSAI--GGHERALKYAEQHLQLAXXXX 377 (411)
T ss_dssp HHHHHHHHHHHHHHHHT--TCHHHHHHHHHHHHHHCCHHH
T ss_pred HHHHHHHHHHHHHHHHh--ccHHHHHHHHHHHHHHHhhcc
Confidence 56899999999999 999999999999999987644
No 36
>3u4t_A TPR repeat-containing protein; structural genomics, PSI- protein structure initiative, northeast structural genomics consortium, NESG; 2.28A {Cytophaga hutchinsonii}
Probab=99.89 E-value=2.2e-22 Score=202.13 Aligned_cols=254 Identities=13% Similarity=0.047 Sum_probs=220.8
Q ss_pred hhccCchHHHHhccCchhhHHHHHHHHHHHHhhccCCcCCchHHhhhHHHHHHhCCchHHHHhHHHHHHHHHHHHHHHHH
Q 006120 28 AVSPNHGIVFDDTWKIVDDLEILVKRLKAKQAKDGKLKGDNSDAFSDAGWSRELGTSAEISEKRVFWEESTHDYAVFVKE 107 (660)
Q Consensus 28 ~~~~~lg~~y~~~~~~~~al~~~~~~~~~a~~~~~~l~~~~~~a~~~~~~~~~l~~~~~~~~~~~~l~~~~~~~g~~~~A 107 (660)
..+.++|..+...+++.+++..+.+.++ ..|... ..+..++.++...|++++|
T Consensus 4 ~~~~~~a~~~~~~~~~~~A~~~~~~~l~--------~~p~~~-------------------~~~~~l~~~~~~~~~~~~A 56 (272)
T 3u4t_A 4 DVEFRYADFLFKNNNYAEAIEVFNKLEA--------KKYNSP-------------------YIYNRRAVCYYELAKYDLA 56 (272)
T ss_dssp -CHHHHHHHHHTTTCHHHHHHHHHHHHH--------TTCCCS-------------------TTHHHHHHHHHHTTCHHHH
T ss_pred HHHHHHHHHHHHhcCHHHHHHHHHHHHH--------hCCCcH-------------------HHHHHHHHHHHHHhhHHHH
Confidence 4567889999999999999999999988 233322 2445567788999999999
Q ss_pred HHHHHHHHhhccCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 006120 108 LGVLRNRADGARSREEAFDGHMAIGRVLYEHQLFKEALVSFKRACELQPTDVRPHFRAGNCLYVLGRYREAKEEYLLALE 187 (660)
Q Consensus 108 l~~l~~a~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~ 187 (660)
+..++++++..++......++..+|.++...|++++|+.+|+++++.+|.++.++..+|.++...|++++|+..++++++
T Consensus 57 ~~~~~~a~~~~~~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~ 136 (272)
T 3u4t_A 57 QKDIETYFSKVNATKAKSADFEYYGKILMKKGQDSLAIQQYQAAVDRDTTRLDMYGQIGSYFYNKGNFPLAIQYMEKQIR 136 (272)
T ss_dssp HHHHHHHHTTSCTTTCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCTHHHHHHHHHHHHTTCHHHHHHHHGGGCC
T ss_pred HHHHHHHHhccCchhHHHHHHHHHHHHHHHcccHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHccCHHHHHHHHHHHhh
Confidence 99999999944444444677999999999999999999999999999999999999999999999999999999999999
Q ss_pred HhccCCCchhchHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHCCC---HHHHHHHHHHHHHh
Q 006120 188 AAETGGNQWAYLLPQIYVNLGIALEGEGMVLSACEYYRESAILCPTHFRALKLLGSALFGVGE---YRAAVKALEEAIFI 264 (660)
Q Consensus 188 ~~p~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~---~~~A~~~~~~al~~ 264 (660)
..|. .+.++..+|......+++++|+..++++++..|++..++..+|.++...|+ +++|+..+++++++
T Consensus 137 ~~~~--------~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~ 208 (272)
T 3u4t_A 137 PTTT--------DPKVFYELGQAYYYNKEYVKADSSFVKVLELKPNIYIGYLWRARANAAQDPDTKQGLAKPYYEKLIEV 208 (272)
T ss_dssp SSCC--------CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHSTTCSSCTTHHHHHHHHHH
T ss_pred cCCC--------cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCccchHHHHHHHHHHHHcCcchhhHHHHHHHHHHHHH
Confidence 9888 788999999555556699999999999999999999999999999999999 99999999999998
Q ss_pred C---CC-----CHHHHHHHHHHHHhCCChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHh
Q 006120 265 K---PD-----YADAHCDLASALHAMGEDERAIEVFQKAIDLKPGHVDALYNLGGLYMDL 316 (660)
Q Consensus 265 ~---p~-----~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~La~~~~~~ 316 (660)
. |+ ...++..+|.+|...|++++|+.+++++++++|+++.++..++.+....
T Consensus 209 ~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~~~a~~~l~~~~~~~ 268 (272)
T 3u4t_A 209 CAPGGAKYKDELIEANEYIAYYYTINRDKVKADAAWKNILALDPTNKKAIDGLKMKLEHH 268 (272)
T ss_dssp HGGGGGGGHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHC------
T ss_pred HhcccccchHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCccHHHHHHHhhhhhccc
Confidence 6 44 2368999999999999999999999999999999999999988876543
No 37
>3vtx_A MAMA; tetratricopeptide repeats (TPR) containing protein, peptide protein, protein binding; 1.75A {Candidatus magnetobacterium bavaricum} PDB: 3vty_A
Probab=99.89 E-value=1.3e-21 Score=184.68 Aligned_cols=172 Identities=30% Similarity=0.397 Sum_probs=167.2
Q ss_pred CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhccCCCchhchHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCcHH
Q 006120 157 TDVRPHFRAGNCLYVLGRYREAKEEYLLALEAAETGGNQWAYLLPQIYVNLGIALEGEGMVLSACEYYRESAILCPTHFR 236 (660)
Q Consensus 157 ~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~ 236 (660)
+++.+|+++|.++...|++++|+..|+++++++|+ .+.++..+|.++...|++++|+..+++++...|+...
T Consensus 3 e~~~iy~~lG~~~~~~g~~~~A~~~~~~al~~~p~--------~~~~~~~la~~~~~~~~~~~a~~~~~~~~~~~~~~~~ 74 (184)
T 3vtx_A 3 ETTTIYMDIGDKKRTKGDFDGAIRAYKKVLKADPN--------NVETLLKLGKTYMDIGLPNDAIESLKKFVVLDTTSAE 74 (184)
T ss_dssp -CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTT--------CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCCCHH
T ss_pred cHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC--------CHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCchhHH
Confidence 46789999999999999999999999999999999 7899999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhCCChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHh
Q 006120 237 ALKLLGSALFGVGEYRAAVKALEEAIFIKPDYADAHCDLASALHAMGEDERAIEVFQKAIDLKPGHVDALYNLGGLYMDL 316 (660)
Q Consensus 237 ~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~La~~~~~~ 316 (660)
++..+|.++...++++.|...+.+++.+.|++..++..+|.++..+|++++|+..|+++++++|+++.++.++|.+|..+
T Consensus 75 ~~~~~~~~~~~~~~~~~a~~~~~~a~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~lg~~~~~~ 154 (184)
T 3vtx_A 75 AYYILGSANFMIDEKQAAIDALQRAIALNTVYADAYYKLGLVYDSMGEHDKAIEAYEKTISIKPGFIRAYQSIGLAYEGK 154 (184)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhCccchHHHHHHHHHHHHhCCchhHHHHHHHHHHhcchhhhHHHHHHHHHHHC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cCCCHHHHHHHHHHHHcccCCh
Q 006120 317 GAGETEEAKKALKEALKMTNRV 338 (660)
Q Consensus 317 ~~g~~~eA~~~~~~al~l~p~~ 338 (660)
|++++|+.+|+++++++|+.
T Consensus 155 --g~~~~A~~~~~~al~~~p~~ 174 (184)
T 3vtx_A 155 --GLRDEAVKYFKKALEKEEKK 174 (184)
T ss_dssp --TCHHHHHHHHHHHHHTTHHH
T ss_pred --CCHHHHHHHHHHHHhCCccC
Confidence 99999999999999998863
No 38
>3sf4_A G-protein-signaling modulator 2; tetratricopeptide repeat, TPR, cell polarity, asymmetric CEL division, mitotic spindle orientation; 2.60A {Homo sapiens}
Probab=99.89 E-value=8.9e-22 Score=209.20 Aligned_cols=286 Identities=17% Similarity=0.189 Sum_probs=245.9
Q ss_pred cchhhccCchHHHHhccCchhhHHHHHHHHHHHHhhccCCcCCchHHhhhHHHHHHhCCchHHHHhHHHHHHHHHHHHHH
Q 006120 25 AAWAVSPNHGIVFDDTWKIVDDLEILVKRLKAKQAKDGKLKGDNSDAFSDAGWSRELGTSAEISEKRVFWEESTHDYAVF 104 (660)
Q Consensus 25 ~~~~~~~~lg~~y~~~~~~~~al~~~~~~~~~a~~~~~~l~~~~~~a~~~~~~~~~l~~~~~~~~~~~~l~~~~~~~g~~ 104 (660)
....++...|..+...|++.+++..+.++++. .+... ......+..++.++...|++
T Consensus 7 ~~~~~l~~~g~~~~~~g~~~~A~~~~~~al~~--------~~~~~---------------~~~~~~~~~l~~~~~~~g~~ 63 (406)
T 3sf4_A 7 ASCLELALEGERLCKSGDCRAGVSFFEAAVQV--------GTEDL---------------KTLSAIYSQLGNAYFYLHDY 63 (406)
T ss_dssp CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--------CCSCH---------------HHHHHHHHHHHHHHHHTTCH
T ss_pred HHHHHHHHHHHHHHHhccHHHHHHHHHHHHhc--------CcccH---------------HHHHHHHHHHHHHHHHhcCH
Confidence 34556778999999999999999999999983 22221 12245666778899999999
Q ss_pred HHHHHHHHHHHhhc---cCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC------HHHHHHHHHHHHHcCC-
Q 006120 105 VKELGVLRNRADGA---RSREEAFDGHMAIGRVLYEHQLFKEALVSFKRACELQPTD------VRPHFRAGNCLYVLGR- 174 (660)
Q Consensus 105 ~~Al~~l~~a~~~~---~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~------~~~~~~la~~~~~~g~- 174 (660)
.+|+..+++++... .+.+....++..+|.++...|++++|+.+++++++..|.. ..++..+|.++...|+
T Consensus 64 ~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~ 143 (406)
T 3sf4_A 64 AKALEYHHHDLTLARTIGDQLGEAKASGNLGNTLKVLGNFDEAIVCCQRHLDISRELNDKVGEARALYNLGNVYHAKGKS 143 (406)
T ss_dssp HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcccccchHHHHHHHHHHHHHcCCc
Confidence 99999999987764 3466778899999999999999999999999999986542 5689999999999999
Q ss_pred -------------------HHHHHHHHHHHHHHhccCCCchhchHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCc-
Q 006120 175 -------------------YREAKEEYLLALEAAETGGNQWAYLLPQIYVNLGIALEGEGMVLSACEYYRESAILCPTH- 234 (660)
Q Consensus 175 -------------------~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~- 234 (660)
+++|+.++++++++.+...+... ...++.++|.++...|++++|+.++++++++.+..
T Consensus 144 ~~~~~~~~~~~~~~~a~~~~~~A~~~~~~al~~~~~~~~~~~--~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~ 221 (406)
T 3sf4_A 144 FGCPGPQDVGEFPEEVRDALQAAVDFYEENLSLVTALGDRAA--QGRAFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFG 221 (406)
T ss_dssp CC-------CCCCHHHHHHHHHHHHHHHHHHHHHHHTTCHHH--HHHHHHHHHHHHHHHTBHHHHHHHHHHHHHHHHHTT
T ss_pred ccccccchhhhhhhhHHHHHHHHHHHHHHHHHHHHhccCcHH--HHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHhcC
Confidence 99999999999998766544433 77899999999999999999999999999886543
Q ss_pred -----HHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCC------HHHHHHHHHHHHhCCChHHHHHHHHHHHHhCCCC-
Q 006120 235 -----FRALKLLGSALFGVGEYRAAVKALEEAIFIKPDY------ADAHCDLASALHAMGEDERAIEVFQKAIDLKPGH- 302 (660)
Q Consensus 235 -----~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~------~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~- 302 (660)
..++.++|.++...|++++|+.++++++.+.+.. ..++..+|.++...|++++|+.++++++++.+..
T Consensus 222 ~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~ 301 (406)
T 3sf4_A 222 DKAAERRAYSNLGNAYIFLGEFETASEYYKKTLLLARQLKDRAVEAQSCYSLGNTYTLLQDYEKAIDYHLKHLAIAQELN 301 (406)
T ss_dssp CHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTT
T ss_pred CcHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHhCcCchHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHhcC
Confidence 3489999999999999999999999999987655 7789999999999999999999999999985543
Q ss_pred -----HHHHHHHHHHHHHhcCCCHHHHHHHHHHHHcccCC
Q 006120 303 -----VDALYNLGGLYMDLGAGETEEAKKALKEALKMTNR 337 (660)
Q Consensus 303 -----~~a~~~La~~~~~~~~g~~~eA~~~~~~al~l~p~ 337 (660)
..++..+|.++... |++++|+.++++++++.+.
T Consensus 302 ~~~~~~~~~~~la~~~~~~--g~~~~A~~~~~~al~~~~~ 339 (406)
T 3sf4_A 302 DRIGEGRACWSLGNAYTAL--GNHDQAMHFAEKHLEISRE 339 (406)
T ss_dssp CHHHHHHHHHHHHHHHHHH--TCHHHHHHHHHHHHHHHHH
T ss_pred CcHHHHHHHHHHHHHHHHc--CCHHHHHHHHHHHHHHHHH
Confidence 66899999999999 9999999999999998643
No 39
>2vq2_A PILW, putative fimbrial biogenesis and twitching motility protein; secretin, TPR repeat, type IV pilus, bacterail virulence; 1.54A {Neisseria meningitidis}
Probab=99.89 E-value=7e-21 Score=184.65 Aligned_cols=209 Identities=18% Similarity=0.132 Sum_probs=198.1
Q ss_pred cHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhccCCCchhchH
Q 006120 121 REEAFDGHMAIGRVLYEHQLFKEALVSFKRACELQPTDVRPHFRAGNCLYVLGRYREAKEEYLLALEAAETGGNQWAYLL 200 (660)
Q Consensus 121 ~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~ 200 (660)
.+....+++.+|.++...|++++|+..|+++++..|++..++..+|.++...|++++|+..++++++..|. .
T Consensus 4 ~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~--------~ 75 (225)
T 2vq2_A 4 ANQVSNIKTQLAMEYMRGQDYRQATASIEDALKSDPKNELAWLVRAEIYQYLKVNDKAQESFRQALSIKPD--------S 75 (225)
T ss_dssp CCHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT--------C
T ss_pred CcccHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhCccchHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCC--------C
Confidence 45567889999999999999999999999999999999999999999999999999999999999999988 6
Q ss_pred HHHHHHHHHHHHHC-CCHHHHHHHHHHHHH--hCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHH
Q 006120 201 PQIYVNLGIALEGE-GMVLSACEYYRESAI--LCPTHFRALKLLGSALFGVGEYRAAVKALEEAIFIKPDYADAHCDLAS 277 (660)
Q Consensus 201 ~~~~~~la~~~~~~-g~~~~A~~~~~~al~--~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~ 277 (660)
..++..+|.++... |++++|+.+++++++ ..|....++..+|.++...|++++|+..++++++..|++..++..+|.
T Consensus 76 ~~~~~~l~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~ 155 (225)
T 2vq2_A 76 AEINNNYGWFLCGRLNRPAESMAYFDKALADPTYPTPYIANLNKGICSAKQGQFGLAEAYLKRSLAAQPQFPPAFKELAR 155 (225)
T ss_dssp HHHHHHHHHHHHTTTCCHHHHHHHHHHHHTSTTCSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHH
T ss_pred hHHHHHHHHHHHHhcCcHHHHHHHHHHHHcCcCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCchHHHHHHH
Confidence 78899999999999 999999999999999 677778999999999999999999999999999999999999999999
Q ss_pred HHHhCCChHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHcccCChh
Q 006120 278 ALHAMGEDERAIEVFQKAIDLKP-GHVDALYNLGGLYMDLGAGETEEAKKALKEALKMTNRVE 339 (660)
Q Consensus 278 ~~~~~g~~~~A~~~~~~al~~~p-~~~~a~~~La~~~~~~~~g~~~eA~~~~~~al~l~p~~~ 339 (660)
++...|++++|+..++++++..| .+...+..++.++... |+.++|..+++.+++..|+..
T Consensus 156 ~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~a~~~~~~~~~~~p~~~ 216 (225)
T 2vq2_A 156 TKMLAGQLGDADYYFKKYQSRVEVLQADDLLLGWKIAKAL--GNAQAAYEYEAQLQANFPYSE 216 (225)
T ss_dssp HHHHHTCHHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHT--TCHHHHHHHHHHHHHHCTTCH
T ss_pred HHHHcCCHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHhc--CcHHHHHHHHHHHHHhCCCCH
Confidence 99999999999999999999999 9999999999999988 999999999999999988754
No 40
>2q7f_A YRRB protein; TPR, protein binding; 2.49A {Bacillus subtilis} SCOP: k.38.1.1
Probab=99.89 E-value=1.7e-21 Score=191.72 Aligned_cols=220 Identities=21% Similarity=0.203 Sum_probs=187.5
Q ss_pred HHHHhHHHHHHHHHHHHHHHHHHHHHHHHHhhccCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHH
Q 006120 86 EISEKRVFWEESTHDYAVFVKELGVLRNRADGARSREEAFDGHMAIGRVLYEHQLFKEALVSFKRACELQPTDVRPHFRA 165 (660)
Q Consensus 86 ~~~~~~~~l~~~~~~~g~~~~Al~~l~~a~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l 165 (660)
.....+..++..+...|++++|+..++++++..+.. ..++..+|.++...|++++|+..|+++++..|.+..++..+
T Consensus 21 ~~~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~~~~---~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l 97 (243)
T 2q7f_A 21 MASMTGGQQMGRGSEFGDYEKAAEAFTKAIEENKED---AIPYINFANLLSSVNELERALAFYDKALELDSSAATAYYGA 97 (243)
T ss_dssp ---------------------CCTTHHHHHTTCTTC---HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHH
T ss_pred hHHHHHHHHHHHHHHhhCHHHHHHHHHHHHHhCccc---HHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCcchHHHHHH
Confidence 334566777888999999999999999999877665 47889999999999999999999999999999999999999
Q ss_pred HHHHHHcCCHHHHHHHHHHHHHHhccCCCchhchHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHH
Q 006120 166 GNCLYVLGRYREAKEEYLLALEAAETGGNQWAYLLPQIYVNLGIALEGEGMVLSACEYYRESAILCPTHFRALKLLGSAL 245 (660)
Q Consensus 166 a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~ 245 (660)
|.++...|++++|+..++++++..|. ...++..+|.++...|++++|+.+++++++..|++..++..+|.++
T Consensus 98 a~~~~~~~~~~~A~~~~~~~~~~~~~--------~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~ 169 (243)
T 2q7f_A 98 GNVYVVKEMYKEAKDMFEKALRAGME--------NGDLFYMLGTVLVKLEQPKLALPYLQRAVELNENDTEARFQFGMCL 169 (243)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHTCC--------SHHHHHHHHHHHHHTSCHHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred HHHHHHhccHHHHHHHHHHHHHhCCC--------CHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCccHHHHHHHHHHH
Confidence 99999999999999999999999988 6788999999999999999999999999999999999999999999
Q ss_pred HHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhCCChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHh
Q 006120 246 FGVGEYRAAVKALEEAIFIKPDYADAHCDLASALHAMGEDERAIEVFQKAIDLKPGHVDALYNLGGLYMDL 316 (660)
Q Consensus 246 ~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~La~~~~~~ 316 (660)
...|++++|+..+++++...|++..++..+|.++...|++++|+.+++++++++|++..++..++.+....
T Consensus 170 ~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~l~~~~ 240 (243)
T 2q7f_A 170 ANEGMLDEALSQFAAVTEQDPGHADAFYNAGVTYAYKENREKALEMLDKAIDIQPDHMLALHAKKLLGHHH 240 (243)
T ss_dssp HHHTCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCTTHHHHHHHHHHHHCTTCHHHHHHHTC-----
T ss_pred HHcCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHccCHHHHHHHHHHHHccCcchHHHHHHHHHHHhhc
Confidence 99999999999999999999999999999999999999999999999999999999999999888776544
No 41
>4abn_A Tetratricopeptide repeat protein 5; P53 cofactor, stress-response, DNA repair, gene regulation; 2.05A {Mus musculus}
Probab=99.89 E-value=9.5e-22 Score=215.04 Aligned_cols=218 Identities=18% Similarity=0.151 Sum_probs=203.3
Q ss_pred HHHHHHHHHHHHHHHHhhccCcHHHHHHHHHHHHHHHHcCCH-HHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHH
Q 006120 100 DYAVFVKELGVLRNRADGARSREEAFDGHMAIGRVLYEHQLF-KEALVSFKRACELQPTDVRPHFRAGNCLYVLGRYREA 178 (660)
Q Consensus 100 ~~g~~~~Al~~l~~a~~~~~~~~~~~~~~~~lg~~~~~~g~~-~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A 178 (660)
....+++++..+.+.....+.. ..+++.+|.++...|++ ++|+.+|+++++.+|+++.++..+|.+|...|++++|
T Consensus 80 ~~~~~~~al~~l~~~~~~~~~~---a~~~~~lg~~~~~~g~~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~~A 156 (474)
T 4abn_A 80 VQEEMEKTLQQMEEVLGSAQVE---AQALMLKGKALNVTPDYSPEAEVLLSKAVKLEPELVEAWNQLGEVYWKKGDVTSA 156 (474)
T ss_dssp HHHHHHHHHHHHHHHHTTCCCC---HHHHHHHHHHHTSSSSCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHH
T ss_pred HHHHHHHHHHHHHHHhccCchh---HHHHHHHHHHHHhccccHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHH
Confidence 3455777888887766655443 58899999999999999 9999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHhccCCCchhchHHHHHHHHHHHHHHC---------CCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHC-
Q 006120 179 KEEYLLALEAAETGGNQWAYLLPQIYVNLGIALEGE---------GMVLSACEYYRESAILCPTHFRALKLLGSALFGV- 248 (660)
Q Consensus 179 ~~~~~~al~~~p~~~~~~~~~~~~~~~~la~~~~~~---------g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~- 248 (660)
+.+|+++++++|+ . .++.++|.++... |++++|+.+|+++++++|+++.+|.++|.++...
T Consensus 157 ~~~~~~al~~~p~--------~-~~~~~lg~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~ 227 (474)
T 4abn_A 157 HTCFSGALTHCKN--------K-VSLQNLSMVLRQLQTDSGDEHSRHVMDSVRQAKLAVQMDVLDGRSWYILGNAYLSLY 227 (474)
T ss_dssp HHHHHHHHTTCCC--------H-HHHHHHHHHHTTCCCSCHHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhhCCC--------H-HHHHHHHHHHHHhccCChhhhhhhHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHH
Confidence 9999999999986 3 8899999999999 9999999999999999999999999999999999
Q ss_pred -------CCHHHHHHHHHHHHHhCC---CCHHHHHHHHHHHHhCCChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcC
Q 006120 249 -------GEYRAAVKALEEAIFIKP---DYADAHCDLASALHAMGEDERAIEVFQKAIDLKPGHVDALYNLGGLYMDLGA 318 (660)
Q Consensus 249 -------g~~~~A~~~~~~al~~~p---~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~La~~~~~~~~ 318 (660)
|++++|+..|+++++++| +++.+|.++|.+|..+|++++|+..|+++++++|++..++..++.++..+
T Consensus 228 ~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~a~~~l~~~~~~l-- 305 (474)
T 4abn_A 228 FNTGQNPKISQQALSAYAQAEKVDRKASSNPDLHLNRATLHKYEESYGEALEGFSQAAALDPAWPEPQQREQQLLEFL-- 305 (474)
T ss_dssp HHTTCCHHHHHHHHHHHHHHHHHCGGGGGCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHH--
T ss_pred HhhccccchHHHHHHHHHHHHHhCCCcccCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHH--
Confidence 999999999999999999 99999999999999999999999999999999999999999999999999
Q ss_pred CCHHHHHHHHHHH
Q 006120 319 GETEEAKKALKEA 331 (660)
Q Consensus 319 g~~~eA~~~~~~a 331 (660)
|++++|+..+.+.
T Consensus 306 g~~~eAi~~~~~~ 318 (474)
T 4abn_A 306 SRLTSLLESKGKT 318 (474)
T ss_dssp HHHHHHHHHTTTC
T ss_pred HHHHHHHHHhccc
Confidence 9999998876554
No 42
>2vsy_A XCC0866; transferase, glycosyl transferase, GT-B, OGT, protein O-GLCN; HET: NHE; 2.10A {Xanthomonas campestris PV} PDB: 2jlb_A* 2xgm_A* 2xgo_A* 2xgs_A* 2vsn_A*
Probab=99.88 E-value=7.3e-22 Score=221.21 Aligned_cols=276 Identities=13% Similarity=0.090 Sum_probs=159.1
Q ss_pred CCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhccCCCchhchHHHHHHHHHHHHHHCCCHH
Q 006120 139 QLFKEALVSFKRACELQPTDVRPHFRAGNCLYVLGRYREAKEEYLLALEAAETGGNQWAYLLPQIYVNLGIALEGEGMVL 218 (660)
Q Consensus 139 g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~la~~~~~~g~~~ 218 (660)
|++++|+..|+++++.+|++..++..+|.++...|++++|+..++++++++|+ ...++.++|.++..+|+++
T Consensus 3 g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~--------~~~~~~~lg~~~~~~g~~~ 74 (568)
T 2vsy_A 3 ADGPRELLQLRAAVRHRPQDFVAWLMLADAELGMGDTTAGEMAVQRGLALHPG--------HPEAVARLGRVRWTQQRHA 74 (568)
T ss_dssp ------------------CCHHHHHHHHHHHHHHTCHHHHHHHHHHHHTTSTT--------CHHHHHHHHHHHHHTTCHH
T ss_pred ccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC--------CHHHHHHHHHHHHHCCCHH
Confidence 56666666777776666666666666777666667777777777766666665 5566666666666666666
Q ss_pred HHHHHHHHHHHhCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhC---CChHHHHHHHHHH
Q 006120 219 SACEYYRESAILCPTHFRALKLLGSALFGVGEYRAAVKALEEAIFIKPDYADAHCDLASALHAM---GEDERAIEVFQKA 295 (660)
Q Consensus 219 ~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~---g~~~~A~~~~~~a 295 (660)
+|+.+++++++++|++..++.++|.++...|++++|+..|+++++++|++..++.++|.++..+ |++++|+..++++
T Consensus 75 ~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~g~~~~A~~~~~~a 154 (568)
T 2vsy_A 75 EAAVLLQQASDAAPEHPGIALWLGHALEDAGQAEAAAAAYTRAHQLLPEEPYITAQLLNWRRRLCDWRALDVLSAQVRAA 154 (568)
T ss_dssp HHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCCTTHHHHHHHHHHH
T ss_pred HHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhhccccHHHHHHHHHHH
Confidence 6666666666666666666666666666666666666666666666666666666666666666 6666666666666
Q ss_pred HHhCCCCHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHcccCChhHHHHHHHHHHHHHHhccCCCCCCCCCCccccCcchH
Q 006120 296 IDLKPGHVDALYNLGGLYMDLGAGETEEAKKALKEALKMTNRVELHDAVSHLKQLQKKKSKGNRGTNGEGGFDIVEPSKF 375 (660)
Q Consensus 296 l~~~p~~~~a~~~La~~~~~~~~g~~~eA~~~~~~al~l~p~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~ 375 (660)
++.+|.+...+..++ . .+...-
T Consensus 155 l~~~p~~~~~~~~l~-----~--~~~~~~--------------------------------------------------- 176 (568)
T 2vsy_A 155 VAQGVGAVEPFAFLS-----E--DASAAE--------------------------------------------------- 176 (568)
T ss_dssp HHHTCCCSCHHHHTT-----S--CCCHHH---------------------------------------------------
T ss_pred HhcCCcccChHHHhC-----C--CCHHHH---------------------------------------------------
Confidence 666666555444333 1 110000
Q ss_pred HhhchhhhhhhhHHHHhcCHHHHHHHHHhccCHHHHHHHhhCCCccccccCCCCCCCCccCcchHHHHHhhhccCCCcch
Q 006120 376 KTVGERTTVRQDLANALEIRAFQKITRLSRCDVELLKKEMSETDVPVSYSGGGGPQKSIRKPNLEEILRKFLHFLKPETF 455 (660)
Q Consensus 376 ~~~~~~~~a~~~~~~al~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~ir~~~~~~~~~~~iGY~S~df~ 455 (660)
....... ..+.+..+..|.. +....+.+++| |||++++|.
T Consensus 177 ----------------------~~~~~~~------~~~~~~~~~~~~~-~~~~~~~~~~r-----------I~~~~~~~~ 216 (568)
T 2vsy_A 177 ----------------------QLACART------RAQAIAASVRPLA-PTRVRSKGPLR-----------VGFVSNGFG 216 (568)
T ss_dssp ----------------------HHHHHHH------HHHHHHTTCCCCC-CCCCCSSSCEE-----------EEEEESCSS
T ss_pred ----------------------HHHHHHH------HHhccCcccCCCC-CCCCCCCCCeE-----------EEEECcccc
Confidence 0000000 0111111111111 11223466777 999999999
Q ss_pred HHHHHHHHHHhhhh--ccCCCcccccchhhhhhhcccCCCCHHHHHHhhhhhhcccccCCCC----ccchhccHHHHHH
Q 006120 456 QGAVKAINERILSV--LDETGSARVDLGMFYAILAPICSGSPEKRKRVAFDALLWRPVNEGS----TQVRKVDAVRYIK 528 (660)
Q Consensus 456 ~H~v~~l~~~~l~~--hDr~g~~~fev~~y~~~~~~~~~~~~~~r~r~~~d~~~~~~~~~~~----a~~i~~D~~~~l~ 528 (660)
.|+++.++..+++. ||+. +|||++| +.++...+.++.+++... .|..+.... ..+++.+.+|+++
T Consensus 217 ~~g~~~~~~~l~~~L~~~~~---~~~v~~~--~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~l~~~i~~~~~Div~ 287 (568)
T 2vsy_A 217 AHPTGLLTVALFEALQRRQP---DLQMHLF--ATSGDDGSTLRTRLAQAS---TLHDVTALGHLATAKHIRHHGIDLLF 287 (568)
T ss_dssp SSHHHHHHHHHHHHHHHHCT---TEEEEEE--ESSCCCSCHHHHHHHHTS---EEEECTTCCHHHHHHHHHHTTCSEEE
T ss_pred cChHHHHHHHHHhhccCCcc---cEEEEEE--ECCCCCccHHHHHHHhcC---eEEECCCCCHHHHHHHHHhCCCCEEE
Confidence 99999999999999 9998 8999998 555443456667776655 344433322 3444554455544
No 43
>3ro2_A PINS homolog, G-protein-signaling modulator 2; TPR repeat, protein-protein interaction, protein-binding, PR binding; 2.30A {Mus musculus}
Probab=99.88 E-value=1.4e-21 Score=201.23 Aligned_cols=283 Identities=17% Similarity=0.196 Sum_probs=238.8
Q ss_pred hhccCchHHHHhccCchhhHHHHHHHHHHHHhhccCCcCCchHHhhhHHHHHHhCCchHHHHhHHHHHHHHHHHHHHHHH
Q 006120 28 AVSPNHGIVFDDTWKIVDDLEILVKRLKAKQAKDGKLKGDNSDAFSDAGWSRELGTSAEISEKRVFWEESTHDYAVFVKE 107 (660)
Q Consensus 28 ~~~~~lg~~y~~~~~~~~al~~~~~~~~~a~~~~~~l~~~~~~a~~~~~~~~~l~~~~~~~~~~~~l~~~~~~~g~~~~A 107 (660)
..+...|..+...|++.+++..+.++++. .+... ......+..++.++...|++.+|
T Consensus 6 ~~l~~~g~~~~~~g~~~~A~~~~~~al~~--------~~~~~---------------~~~~~~~~~l~~~~~~~g~~~~A 62 (338)
T 3ro2_A 6 LELALEGERLCKSGDCRAGVSFFEAAVQV--------GTEDL---------------KTLSAIYSQLGNAYFYLHDYAKA 62 (338)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHH--------CCSCH---------------HHHHHHHHHHHHHHHHTTCHHHH
T ss_pred HHHHHHHHHHHHhccHHHHHHHHHHHHhh--------CcccH---------------HHHHHHHHHHHHHHHHcCCHHHH
Confidence 34566799999999999999999999983 22221 12234566778899999999999
Q ss_pred HHHHHHHHhhcc---CcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC------HHHHHHHHHHHHHcCC----
Q 006120 108 LGVLRNRADGAR---SREEAFDGHMAIGRVLYEHQLFKEALVSFKRACELQPTD------VRPHFRAGNCLYVLGR---- 174 (660)
Q Consensus 108 l~~l~~a~~~~~---~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~------~~~~~~la~~~~~~g~---- 174 (660)
+..+++++.... +.+....++..+|.++...|++++|+..++++++..+.. ..++..+|.++...|+
T Consensus 63 ~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~ 142 (338)
T 3ro2_A 63 LEYHHHDLTLARTIGDQLGEAKASGNLGNTLKVLGNFDEAIVCCQRHLDISRELNDKVGEARALYNLGNVYHAKGKSFGC 142 (338)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHTSSS
T ss_pred HHHHHHHHHHhhcccccHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHcCccccc
Confidence 999999877643 466677899999999999999999999999999886533 4589999999999999
Q ss_pred ----------------HHHHHHHHHHHHHHhccCCCchhchHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCc----
Q 006120 175 ----------------YREAKEEYLLALEAAETGGNQWAYLLPQIYVNLGIALEGEGMVLSACEYYRESAILCPTH---- 234 (660)
Q Consensus 175 ----------------~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~---- 234 (660)
+++|+..+++++.+.+....... ...++..+|.++...|++++|+.++++++++.+..
T Consensus 143 ~~~~~~~~~~~~a~~~~~~A~~~~~~a~~~~~~~~~~~~--~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~ 220 (338)
T 3ro2_A 143 PGPQDTGEFPEDVRNALQAAVDLYEENLSLVTALGDRAA--QGRAFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGDKA 220 (338)
T ss_dssp SSCC----CCHHHHHHHHHHHHHHHHHHHHHHHHTCHHH--HHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHH
T ss_pred chhhhhhhhhhhHHHHHHHHHHHHHHHHHHHHhcCCHHH--HHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhcCChH
Confidence 99999999999988665444333 67899999999999999999999999999875443
Q ss_pred --HHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCC------HHHHHHHHHHHHhCCChHHHHHHHHHHHHhCCCC----
Q 006120 235 --FRALKLLGSALFGVGEYRAAVKALEEAIFIKPDY------ADAHCDLASALHAMGEDERAIEVFQKAIDLKPGH---- 302 (660)
Q Consensus 235 --~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~------~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~---- 302 (660)
..++..+|.++...|++++|+.++++++.+.+.. ..++..+|.++..+|++++|+.++++++++.+..
T Consensus 221 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~ 300 (338)
T 3ro2_A 221 AERRAYSNLGNAYIFLGEFETASEYYKKTLLLARQLKDRAVEAQSCYSLGNTYTLLQDYEKAIDYHLKHLAIAQELKDRI 300 (338)
T ss_dssp HHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHH
T ss_pred HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhhcchhHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhcCCcH
Confidence 3489999999999999999999999999987655 7789999999999999999999999999885432
Q ss_pred --HHHHHHHHHHHHHhcCCCHHHHHHHHHHHHcccCC
Q 006120 303 --VDALYNLGGLYMDLGAGETEEAKKALKEALKMTNR 337 (660)
Q Consensus 303 --~~a~~~La~~~~~~~~g~~~eA~~~~~~al~l~p~ 337 (660)
..++..+|.++... |++++|..++++++++.+.
T Consensus 301 ~~~~~~~~la~~~~~~--g~~~~A~~~~~~a~~~~~~ 335 (338)
T 3ro2_A 301 GEGRACWSLGNAYTAL--GNHDQAMHFAEKHLEISRE 335 (338)
T ss_dssp HHHHHHHHHHHHHHHH--TCHHHHHHHHHHHHHC---
T ss_pred HHHHHHHHHHHHHHHc--CChHHHHHHHHHHHHHHHh
Confidence 55889999999999 9999999999999998765
No 44
>1xnf_A Lipoprotein NLPI; TPR, tetratricopeptide, structural genomi unknown function; 1.98A {Escherichia coli} SCOP: a.118.8.1
Probab=99.87 E-value=3.1e-20 Score=186.36 Aligned_cols=228 Identities=16% Similarity=0.037 Sum_probs=206.2
Q ss_pred HHHHHHHHHHHHHHHHHhhcc-CcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHH
Q 006120 99 HDYAVFVKELGVLRNRADGAR-SREEAFDGHMAIGRVLYEHQLFKEALVSFKRACELQPTDVRPHFRAGNCLYVLGRYRE 177 (660)
Q Consensus 99 ~~~g~~~~Al~~l~~a~~~~~-~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~ 177 (660)
...+++++|+..++++++..+ .++....+++.+|.++...|++++|+..|+++++.+|+++.++..+|.++...|++++
T Consensus 16 ~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~~~~~~ 95 (275)
T 1xnf_A 16 QPTLQQEVILARMEQILASRALTDDERAQLLYERGVLYDSLGLRALARNDFSQALAIRPDMPEVFNYLGIYLTQAGNFDA 95 (275)
T ss_dssp CCCHHHHHHHHHHHHHHTSSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHTTCHHH
T ss_pred CccchHHHHHHHHHHHHhcccccCchhHHHHHHHHHHHHHcccHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHccCHHH
Confidence 445899999999999998754 3456789999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHhccCCCchhchHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHCCCHHHHHHH
Q 006120 178 AKEEYLLALEAAETGGNQWAYLLPQIYVNLGIALEGEGMVLSACEYYRESAILCPTHFRALKLLGSALFGVGEYRAAVKA 257 (660)
Q Consensus 178 A~~~~~~al~~~p~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~ 257 (660)
|+..+++++++.|. ...++..+|.++...|++++|+.++++++++.|++......++.. ...|++++|+..
T Consensus 96 A~~~~~~al~~~~~--------~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~-~~~~~~~~A~~~ 166 (275)
T 1xnf_A 96 AYEAFDSVLELDPT--------YNYAHLNRGIALYYGGRDKLAQDDLLAFYQDDPNDPFRSLWLYLA-EQKLDEKQAKEV 166 (275)
T ss_dssp HHHHHHHHHHHCTT--------CTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHH-HHHHCHHHHHHH
T ss_pred HHHHHHHHHhcCcc--------ccHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCChHHHHHHHHH-HHhcCHHHHHHH
Confidence 99999999999998 678999999999999999999999999999999998776666544 666999999999
Q ss_pred HHHHHHhCCCCHHHHHHHHHHHHhCCChHHHHHHHHHHHHhCCCC----HHHHHHHHHHHHHhcCCCHHHHHHHHHHHHc
Q 006120 258 LEEAIFIKPDYADAHCDLASALHAMGEDERAIEVFQKAIDLKPGH----VDALYNLGGLYMDLGAGETEEAKKALKEALK 333 (660)
Q Consensus 258 ~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~----~~a~~~La~~~~~~~~g~~~eA~~~~~~al~ 333 (660)
+++++...|.+...+. ++.++...++.++|+..+++++...|.. +.++..+|.++... |++++|+.+|+++++
T Consensus 167 ~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~--g~~~~A~~~~~~al~ 243 (275)
T 1xnf_A 167 LKQHFEKSDKEQWGWN-IVEFYLGNISEQTLMERLKADATDNTSLAEHLSETNFYLGKYYLSL--GDLDSATALFKLAVA 243 (275)
T ss_dssp HHHHHHHSCCCSTHHH-HHHHHTTSSCHHHHHHHHHHHCCSHHHHHHHHHHHHHHHHHHHHHT--TCHHHHHHHHHHHHT
T ss_pred HHHHHhcCCcchHHHH-HHHHHHHhcCHHHHHHHHHHHhcccccccccccHHHHHHHHHHHHc--CCHHHHHHHHHHHHh
Confidence 9999999998866654 7778888999999999999998877643 68999999999999 999999999999999
Q ss_pred ccCCh
Q 006120 334 MTNRV 338 (660)
Q Consensus 334 l~p~~ 338 (660)
++|..
T Consensus 244 ~~p~~ 248 (275)
T 1xnf_A 244 NNVHN 248 (275)
T ss_dssp TCCTT
T ss_pred CCchh
Confidence 99864
No 45
>2ho1_A Type 4 fimbrial biogenesis protein PILF; type IV pilus biogenesis, TPR, superhelix, protein binding; HET: MSE; 2.00A {Pseudomonas aeruginosa} PDB: 2fi7_A
Probab=99.87 E-value=6.4e-20 Score=181.92 Aligned_cols=216 Identities=17% Similarity=0.081 Sum_probs=201.9
Q ss_pred CchHH-HHhHHHHHHHHHHHHHHHHHHHHHHHHHhhccCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHH
Q 006120 83 TSAEI-SEKRVFWEESTHDYAVFVKELGVLRNRADGARSREEAFDGHMAIGRVLYEHQLFKEALVSFKRACELQPTDVRP 161 (660)
Q Consensus 83 ~~~~~-~~~~~~l~~~~~~~g~~~~Al~~l~~a~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~ 161 (660)
.++.. ...+..++..+...|++++|+..++++++..+.. ..++..+|.++...|++++|+..|+++++..|.+..+
T Consensus 31 ~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~~~~---~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~ 107 (252)
T 2ho1_A 31 KGRDEARDAYIQLGLGYLQRGNTEQAKVPLRKALEIDPSS---ADAHAALAVVFQTEMEPKLADEEYRKALASDSRNARV 107 (252)
T ss_dssp CCHHHHHHHHHHHHHHHHHTTCTGGGHHHHHHHHHHCTTC---HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHH
T ss_pred cchHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCh---HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCcHHH
Confidence 34444 6788888999999999999999999999987665 4789999999999999999999999999999999999
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHH--HhccCCCchhchHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCcHHHHH
Q 006120 162 HFRAGNCLYVLGRYREAKEEYLLALE--AAETGGNQWAYLLPQIYVNLGIALEGEGMVLSACEYYRESAILCPTHFRALK 239 (660)
Q Consensus 162 ~~~la~~~~~~g~~~~A~~~~~~al~--~~p~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~ 239 (660)
+..+|.++...|++++|+.+++++++ ..|. ...++..+|.++...|++++|+.+++++++..|.+..++.
T Consensus 108 ~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~--------~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~ 179 (252)
T 2ho1_A 108 LNNYGGFLYEQKRYEEAYQRLLEASQDTLYPE--------RSRVFENLGLVSLQMKKPAQAKEYFEKSLRLNRNQPSVAL 179 (252)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHTTCTTCTT--------HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSCCHHHHH
T ss_pred HHHHHHHHHHHhHHHHHHHHHHHHHhCccCcc--------cHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCcccHHHHH
Confidence 99999999999999999999999998 5555 7899999999999999999999999999999999999999
Q ss_pred HHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhCCChHHHHHHHHHHHHhCCCCHHHHHHH
Q 006120 240 LLGSALFGVGEYRAAVKALEEAIFIKPDYADAHCDLASALHAMGEDERAIEVFQKAIDLKPGHVDALYNL 309 (660)
Q Consensus 240 ~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~L 309 (660)
.+|.++...|++++|+..++++++..|++..++..++.++...|++++|..+++++++..|+++.+...+
T Consensus 180 ~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l 249 (252)
T 2ho1_A 180 EMADLLYKEREYVPARQYYDLFAQGGGQNARSLLLGIRLAKVFEDRDTAASYGLQLKRLYPGSLEYQEFQ 249 (252)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHTTSCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTSHHHHHHH
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHhCcCcHHHHHHHHHHHHHccCHHHHHHHHHHHHHHCCCCHHHHHHH
Confidence 9999999999999999999999999999999999999999999999999999999999999998876543
No 46
>3sf4_A G-protein-signaling modulator 2; tetratricopeptide repeat, TPR, cell polarity, asymmetric CEL division, mitotic spindle orientation; 2.60A {Homo sapiens}
Probab=99.87 E-value=5.3e-21 Score=203.22 Aligned_cols=282 Identities=20% Similarity=0.214 Sum_probs=233.2
Q ss_pred HhHHHHHHHHHHHHHHHHHHHHHHHHHhhccCcHH-HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC------CCCHHH
Q 006120 89 EKRVFWEESTHDYAVFVKELGVLRNRADGARSREE-AFDGHMAIGRVLYEHQLFKEALVSFKRACELQ------PTDVRP 161 (660)
Q Consensus 89 ~~~~~l~~~~~~~g~~~~Al~~l~~a~~~~~~~~~-~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~------p~~~~~ 161 (660)
..+...|..+...|++.+|+..++++++..+..+. ...++..+|.++...|++++|+.+++++++.. |..+.+
T Consensus 10 ~~l~~~g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~ 89 (406)
T 3sf4_A 10 LELALEGERLCKSGDCRAGVSFFEAAVQVGTEDLKTLSAIYSQLGNAYFYLHDYAKALEYHHHDLTLARTIGDQLGEAKA 89 (406)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred HHHHHHHHHHHHhccHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhccccHHHHHH
Confidence 44566788999999999999999999998776544 35789999999999999999999999998873 445778
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHhccCCCchhchHHHHHHHHHHHHHHCCC--------------------HHHHH
Q 006120 162 HFRAGNCLYVLGRYREAKEEYLLALEAAETGGNQWAYLLPQIYVNLGIALEGEGM--------------------VLSAC 221 (660)
Q Consensus 162 ~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~la~~~~~~g~--------------------~~~A~ 221 (660)
+..+|.++...|++++|+..+++++++.+...+... .+.++..+|.++...|+ +++|+
T Consensus 90 ~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~--~~~~~~~l~~~~~~~g~~~~~~~~~~~~~~~~~a~~~~~~A~ 167 (406)
T 3sf4_A 90 SGNLGNTLKVLGNFDEAIVCCQRHLDISRELNDKVG--EARALYNLGNVYHAKGKSFGCPGPQDVGEFPEEVRDALQAAV 167 (406)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHH--HHHHHHHHHHHHHHHHHTCC-------CCCCHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcccccc--hHHHHHHHHHHHHHcCCcccccccchhhhhhhhHHHHHHHHH
Confidence 999999999999999999999999999887655433 67799999999999999 99999
Q ss_pred HHHHHHHHh------CCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCC------HHHHHHHHHHHHhCCChHHHH
Q 006120 222 EYYRESAIL------CPTHFRALKLLGSALFGVGEYRAAVKALEEAIFIKPDY------ADAHCDLASALHAMGEDERAI 289 (660)
Q Consensus 222 ~~~~~al~~------~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~------~~~~~~la~~~~~~g~~~~A~ 289 (660)
.++++++.+ .|....++..+|.++...|++++|+.++++++++.+.. ..++.++|.++..+|++++|+
T Consensus 168 ~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~ 247 (406)
T 3sf4_A 168 DFYEENLSLVTALGDRAAQGRAFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGDKAAERRAYSNLGNAYIFLGEFETAS 247 (406)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTBHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHH
T ss_pred HHHHHHHHHHHhccCcHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHcCChHHHH
Confidence 999999887 33446789999999999999999999999999986544 348999999999999999999
Q ss_pred HHHHHHHHhCCCC------HHHHHHHHHHHHHhcCCCHHHHHHHHHHHHcccCChhHHHHHHHHHHHHHHhccCCCCCCC
Q 006120 290 EVFQKAIDLKPGH------VDALYNLGGLYMDLGAGETEEAKKALKEALKMTNRVELHDAVSHLKQLQKKKSKGNRGTNG 363 (660)
Q Consensus 290 ~~~~~al~~~p~~------~~a~~~La~~~~~~~~g~~~eA~~~~~~al~l~p~~~~~~~~~~l~~l~~~~~~~~~~~~~ 363 (660)
.++++++.+.|.. ..++..+|.++... |++++|+.++++++++.+..............
T Consensus 248 ~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~--g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~------------- 312 (406)
T 3sf4_A 248 EYYKKTLLLARQLKDRAVEAQSCYSLGNTYTLL--QDYEKAIDYHLKHLAIAQELNDRIGEGRACWS------------- 312 (406)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHT--TCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHH-------------
T ss_pred HHHHHHHHHHHhCcCchHHHHHHHHHHHHHHHh--CcHHHHHHHHHHHHHHHHhcCCcHHHHHHHHH-------------
Confidence 9999999987655 67899999999999 99999999999999986543211111111111
Q ss_pred CCCccccCcchHHhhchhhhhhhhHHHHhcC
Q 006120 364 EGGFDIVEPSKFKTVGERTTVRQDLANALEI 394 (660)
Q Consensus 364 ~~~~~~~~~~~~~~~~~~~~a~~~~~~al~~ 394 (660)
.+.++...|+...+...+..++.+
T Consensus 313 -------la~~~~~~g~~~~A~~~~~~al~~ 336 (406)
T 3sf4_A 313 -------LGNAYTALGNHDQAMHFAEKHLEI 336 (406)
T ss_dssp -------HHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred -------HHHHHHHcCCHHHHHHHHHHHHHH
Confidence 123344566677777777777654
No 47
>4a1s_A PINS, partner of inscuteable; cell cycle, LGN, mitotic spindle orientation, asymmetric CEL divisions; 2.10A {Drosophila melanogaster}
Probab=99.87 E-value=7e-21 Score=203.38 Aligned_cols=286 Identities=18% Similarity=0.216 Sum_probs=235.4
Q ss_pred hHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHhhccCcHH-HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh------CCC
Q 006120 85 AEISEKRVFWEESTHDYAVFVKELGVLRNRADGARSREE-AFDGHMAIGRVLYEHQLFKEALVSFKRACEL------QPT 157 (660)
Q Consensus 85 ~~~~~~~~~l~~~~~~~g~~~~Al~~l~~a~~~~~~~~~-~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~------~p~ 157 (660)
+.........+..+...|++.+|+..++++++..+..+. ...++..+|.++...|++++|+.+|+++++. .|.
T Consensus 45 ~~~~~~l~~~g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~ 124 (411)
T 4a1s_A 45 SSMCLELALEGERLCNAGDCRAGVAFFQAAIQAGTEDLRTLSAIYSQLGNAYFYLGDYNKAMQYHKHDLTLAKSMNDRLG 124 (411)
T ss_dssp HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCSCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHH
T ss_pred hHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHhcccChhHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHccCchH
Confidence 444556667889999999999999999999998776543 3468999999999999999999999999998 466
Q ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhccCCCchhchHHHHHHHHHHHHHHCCC-----------------HHHH
Q 006120 158 DVRPHFRAGNCLYVLGRYREAKEEYLLALEAAETGGNQWAYLLPQIYVNLGIALEGEGM-----------------VLSA 220 (660)
Q Consensus 158 ~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~la~~~~~~g~-----------------~~~A 220 (660)
...++..+|.++...|++++|+.++++++++.+...+... ...++..+|.++...|+ +++|
T Consensus 125 ~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~--~~~~~~~l~~~~~~~g~~~~~~~~~~~~~~a~~~~~~A 202 (411)
T 4a1s_A 125 EAKSSGNLGNTLKVMGRFDEAAICCERHLTLARQLGDRLS--EGRALYNLGNVYHAKGKHLGQRNPGKFGDDVKEALTRA 202 (411)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHH--HHHHHHHHHHHHHHHHHHHHHHSTTCCCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHhhchHH--HHHHHHHHHHHHHHcCcccccccchhhhhhhhHHHHHH
Confidence 6789999999999999999999999999999655433322 78899999999999999 9999
Q ss_pred HHHHHHHHHhC------CCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCC------HHHHHHHHHHHHhCCChHHH
Q 006120 221 CEYYRESAILC------PTHFRALKLLGSALFGVGEYRAAVKALEEAIFIKPDY------ADAHCDLASALHAMGEDERA 288 (660)
Q Consensus 221 ~~~~~~al~~~------p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~------~~~~~~la~~~~~~g~~~~A 288 (660)
+.++++++++. +....++..+|.++...|++++|+.++++++++.+.. ..++.++|.++..+|++++|
T Consensus 203 ~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A 282 (411)
T 4a1s_A 203 VEFYQENLKLMRDLGDRGAQGRACGNLGNTYYLLGDFQAAIEHHQERLRIAREFGDRAAERRANSNLGNSHIFLGQFEDA 282 (411)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHTTTCHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHCcCHHHH
Confidence 99999998864 3345689999999999999999999999999987643 33899999999999999999
Q ss_pred HHHHHHHHHhCCCC------HHHHHHHHHHHHHhcCCCHHHHHHHHHHHHcccCChhHHHHHHHHHHHHHHhccCCCCCC
Q 006120 289 IEVFQKAIDLKPGH------VDALYNLGGLYMDLGAGETEEAKKALKEALKMTNRVELHDAVSHLKQLQKKKSKGNRGTN 362 (660)
Q Consensus 289 ~~~~~~al~~~p~~------~~a~~~La~~~~~~~~g~~~eA~~~~~~al~l~p~~~~~~~~~~l~~l~~~~~~~~~~~~ 362 (660)
+.++++++.+.+.. ..++..+|.++... |++++|+.++++++.+.+..............
T Consensus 283 ~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~--g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~------------ 348 (411)
T 4a1s_A 283 AEHYKRTLALAVELGEREVEAQSCYSLGNTYTLL--HEFNTAIEYHNRHLAIAQELGDRIGEARACWS------------ 348 (411)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHT--TCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHH------------
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHc--CCHHHHHHHHHHHHHHHHHCCChHHHHHHHHH------------
Confidence 99999999987644 67899999999999 99999999999999987553221111111111
Q ss_pred CCCCccccCcchHHhhchhhhhhhhHHHHhcC
Q 006120 363 GEGGFDIVEPSKFKTVGERTTVRQDLANALEI 394 (660)
Q Consensus 363 ~~~~~~~~~~~~~~~~~~~~~a~~~~~~al~~ 394 (660)
.+..+...|+...+...+..++.+
T Consensus 349 --------la~~~~~~g~~~~A~~~~~~al~~ 372 (411)
T 4a1s_A 349 --------LGNAHSAIGGHERALKYAEQHLQL 372 (411)
T ss_dssp --------HHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred --------HHHHHHHhccHHHHHHHHHHHHHH
Confidence 123445567777888888877643
No 48
>1ouv_A Conserved hypothetical secreted protein; TPR repeat, HCP repeat, cysteine rich protein, loop-helix-TU repeat protein, hydrolase; 2.00A {Helicobacter pylori} SCOP: a.118.18.1
Probab=99.86 E-value=8.8e-20 Score=183.80 Aligned_cols=225 Identities=17% Similarity=0.223 Sum_probs=207.3
Q ss_pred HHhHHHHHHHHHHHHHHHHHHHHHHHHHhhccCcHHHHHHHHHHHHHHHH----cCCHHHHHHHHHHHHHhCCCCHHHHH
Q 006120 88 SEKRVFWEESTHDYAVFVKELGVLRNRADGARSREEAFDGHMAIGRVLYE----HQLFKEALVSFKRACELQPTDVRPHF 163 (660)
Q Consensus 88 ~~~~~~l~~~~~~~g~~~~Al~~l~~a~~~~~~~~~~~~~~~~lg~~~~~----~g~~~~A~~~~~~al~~~p~~~~~~~ 163 (660)
...+..++.++...+++++|+..++++++ +.+ ..+++.+|.++.. .+++++|+.+|+++++.. ++.+++
T Consensus 6 ~~a~~~lg~~~~~~~~~~~A~~~~~~a~~--~~~---~~a~~~lg~~~~~g~~~~~~~~~A~~~~~~a~~~~--~~~a~~ 78 (273)
T 1ouv_A 6 PKELVGLGAKSYKEKDFTQAKKYFEKACD--LKE---NSGCFNLGVLYYQGQGVEKNLKKAASFYAKACDLN--YSNGCH 78 (273)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHH--TTC---HHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT--CHHHHH
T ss_pred hHHHHHHHHHHHhCCCHHHHHHHHHHHHH--CCC---HHHHHHHHHHHHcCCCcCCCHHHHHHHHHHHHHCC--CHHHHH
Confidence 45667778899999999999999999998 333 3789999999999 999999999999999985 799999
Q ss_pred HHHHHHHH----cCCHHHHHHHHHHHHHHhccCCCchhchHHHHHHHHHHHHHH----CCCHHHHHHHHHHHHHhCCCcH
Q 006120 164 RAGNCLYV----LGRYREAKEEYLLALEAAETGGNQWAYLLPQIYVNLGIALEG----EGMVLSACEYYRESAILCPTHF 235 (660)
Q Consensus 164 ~la~~~~~----~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~la~~~~~----~g~~~~A~~~~~~al~~~p~~~ 235 (660)
.+|.++.. .+++++|+.+|+++++.. .+.++.++|.++.. .+++++|+.+|+++++.. ++
T Consensus 79 ~lg~~~~~g~~~~~~~~~A~~~~~~a~~~~----------~~~a~~~lg~~~~~~~~~~~~~~~A~~~~~~a~~~~--~~ 146 (273)
T 1ouv_A 79 LLGNLYYSGQGVSQNTNKALQYYSKACDLK----------YAEGCASLGGIYHDGKVVTRDFKKAVEYFTKACDLN--DG 146 (273)
T ss_dssp HHHHHHHHTSSSCCCHHHHHHHHHHHHHTT----------CHHHHHHHHHHHHHCSSSCCCHHHHHHHHHHHHHTT--CH
T ss_pred HHHHHHhCCCCcccCHHHHHHHHHHHHHcC----------CccHHHHHHHHHHcCCCcccCHHHHHHHHHHHHhcC--cH
Confidence 99999999 999999999999999873 46889999999999 999999999999999975 68
Q ss_pred HHHHHHHHHHHH----CCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHh----CCChHHHHHHHHHHHHhCCCCHHHHH
Q 006120 236 RALKLLGSALFG----VGEYRAAVKALEEAIFIKPDYADAHCDLASALHA----MGEDERAIEVFQKAIDLKPGHVDALY 307 (660)
Q Consensus 236 ~~~~~lg~~~~~----~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~----~g~~~~A~~~~~~al~~~p~~~~a~~ 307 (660)
.++..+|.++.. .+++++|+.+|+++++. +++.++.++|.+|.. .+++++|+.+++++++..| +.++.
T Consensus 147 ~a~~~lg~~~~~~~~~~~~~~~A~~~~~~a~~~--~~~~a~~~lg~~~~~g~~~~~~~~~A~~~~~~a~~~~~--~~a~~ 222 (273)
T 1ouv_A 147 DGCTILGSLYDAGRGTPKDLKKALASYDKACDL--KDSPGCFNAGNMYHHGEGATKNFKEALARYSKACELEN--GGGCF 222 (273)
T ss_dssp HHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHT--TCHHHHHHHHHHHHHTCSSCCCHHHHHHHHHHHHHTTC--HHHHH
T ss_pred HHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHC--CCHHHHHHHHHHHHcCCCCCccHHHHHHHHHHHHhCCC--HHHHH
Confidence 899999999999 99999999999999987 468999999999999 9999999999999999876 88999
Q ss_pred HHHHHHHH----hcCCCHHHHHHHHHHHHcccCC
Q 006120 308 NLGGLYMD----LGAGETEEAKKALKEALKMTNR 337 (660)
Q Consensus 308 ~La~~~~~----~~~g~~~eA~~~~~~al~l~p~ 337 (660)
.+|.+|.. . +++++|+.+|++++++.|.
T Consensus 223 ~l~~~~~~g~~~~--~~~~~A~~~~~~a~~~~~~ 254 (273)
T 1ouv_A 223 NLGAMQYNGEGVT--RNEKQAIENFKKGCKLGAK 254 (273)
T ss_dssp HHHHHHHTTSSSS--CCSTTHHHHHHHHHHHTCH
T ss_pred HHHHHHHcCCCcc--cCHHHHHHHHHHHHHcCCH
Confidence 99999998 7 9999999999999999876
No 49
>4gyw_A UDP-N-acetylglucosamine--peptide N- acetylglucosaminyltransferase 110 kDa subunit...; GT-B, glycosyltransferase, glcnacylation, transferase-peptid; HET: UDP NAG; 1.70A {Homo sapiens} PDB: 3pe3_A* 3pe4_A* 4ay5_A* 4ay6_A* 3tax_A* 4gyy_A* 4gz3_A* 4gz5_A* 4gz6_A*
Probab=99.86 E-value=5.3e-21 Score=217.68 Aligned_cols=174 Identities=24% Similarity=0.296 Sum_probs=168.0
Q ss_pred CcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhccCCCchhch
Q 006120 120 SREEAFDGHMAIGRVLYEHQLFKEALVSFKRACELQPTDVRPHFRAGNCLYVLGRYREAKEEYLLALEAAETGGNQWAYL 199 (660)
Q Consensus 120 ~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~ 199 (660)
..|..+++++++|.++..+|++++|+.+|+++++++|+++.+++++|.+|..+|++++|+..|+++++++|+
T Consensus 4 s~P~~a~al~nLG~~~~~~G~~~eAi~~~~kAl~l~P~~~~a~~nLg~~l~~~g~~~eA~~~~~~Al~l~P~-------- 75 (723)
T 4gyw_A 4 SCPTHADSLNNLANIKREQGNIEEAVRLYRKALEVFPEFAAAHSNLASVLQQQGKLQEALMHYKEAIRISPT-------- 75 (723)
T ss_dssp --CHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT--------
T ss_pred CCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC--------
Confidence 456678999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHH
Q 006120 200 LPQIYVNLGIALEGEGMVLSACEYYRESAILCPTHFRALKLLGSALFGVGEYRAAVKALEEAIFIKPDYADAHCDLASAL 279 (660)
Q Consensus 200 ~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~ 279 (660)
.+.+++++|.++..+|++++|++.|+++++++|+++.++.++|.++..+|++++|+..|+++++++|+++.++.++|.++
T Consensus 76 ~~~a~~nLg~~l~~~g~~~~A~~~~~kAl~l~P~~~~a~~~Lg~~~~~~g~~~eAi~~~~~Al~l~P~~~~a~~~L~~~l 155 (723)
T 4gyw_A 76 FADAYSNMGNTLKEMQDVQGALQCYTRAIQINPAFADAHSNLASIHKDSGNIPEAIASYRTALKLKPDFPDAYCNLAHCL 155 (723)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSCCHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHhhhhhHH
Confidence 88999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HhCCChHHHHHHHHHHHHhCCC
Q 006120 280 HAMGEDERAIEVFQKAIDLKPG 301 (660)
Q Consensus 280 ~~~g~~~~A~~~~~~al~~~p~ 301 (660)
..+|++++|++.+++++++.|+
T Consensus 156 ~~~g~~~~A~~~~~kal~l~~~ 177 (723)
T 4gyw_A 156 QIVCDWTDYDERMKKLVSIVAD 177 (723)
T ss_dssp HHTTCCTTHHHHHHHHHHHHHH
T ss_pred HhcccHHHHHHHHHHHHHhChh
Confidence 9999999999999999988654
No 50
>3ro2_A PINS homolog, G-protein-signaling modulator 2; TPR repeat, protein-protein interaction, protein-binding, PR binding; 2.30A {Mus musculus}
Probab=99.86 E-value=1.5e-20 Score=193.48 Aligned_cols=245 Identities=21% Similarity=0.238 Sum_probs=214.8
Q ss_pred HhHHHHHHHHHHHHHHHHHHHHHHHHHhhccCcHH-HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh------CCCCHHH
Q 006120 89 EKRVFWEESTHDYAVFVKELGVLRNRADGARSREE-AFDGHMAIGRVLYEHQLFKEALVSFKRACEL------QPTDVRP 161 (660)
Q Consensus 89 ~~~~~l~~~~~~~g~~~~Al~~l~~a~~~~~~~~~-~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~------~p~~~~~ 161 (660)
..+...|..+...|++.+|+..++++++..+..+. ...++..+|.++...|++++|+.+++++++. .|....+
T Consensus 6 ~~l~~~g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~ 85 (338)
T 3ro2_A 6 LELALEGERLCKSGDCRAGVSFFEAAVQVGTEDLKTLSAIYSQLGNAYFYLHDYAKALEYHHHDLTLARTIGDQLGEAKA 85 (338)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHH
T ss_pred HHHHHHHHHHHHhccHHHHHHHHHHHHhhCcccHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhcccccHHHHHH
Confidence 34556688999999999999999999998776544 3578999999999999999999999999987 3445778
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHhccCCCchhchHHHHHHHHHHHHHHCCC--------------------HHHHH
Q 006120 162 HFRAGNCLYVLGRYREAKEEYLLALEAAETGGNQWAYLLPQIYVNLGIALEGEGM--------------------VLSAC 221 (660)
Q Consensus 162 ~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~la~~~~~~g~--------------------~~~A~ 221 (660)
+..+|.++...|++++|+..+++++++.+...+... ...++..+|.++...|+ +++|+
T Consensus 86 ~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~--~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~A~ 163 (338)
T 3ro2_A 86 SGNLGNTLKVLGNFDEAIVCCQRHLDISRELNDKVG--EARALYNLGNVYHAKGKSFGCPGPQDTGEFPEDVRNALQAAV 163 (338)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHH--HHHHHHHHHHHHHHHHHTSSSSSCC----CCHHHHHHHHHHH
T ss_pred HHHHHHHHHHccCHHHHHHHHHHHHHHHHHhcCchH--HHHHHHHHHHHHHHcCcccccchhhhhhhhhhhHHHHHHHHH
Confidence 999999999999999999999999999887665443 67799999999999999 99999
Q ss_pred HHHHHHHHh------CCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCC------HHHHHHHHHHHHhCCChHHHH
Q 006120 222 EYYRESAIL------CPTHFRALKLLGSALFGVGEYRAAVKALEEAIFIKPDY------ADAHCDLASALHAMGEDERAI 289 (660)
Q Consensus 222 ~~~~~al~~------~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~------~~~~~~la~~~~~~g~~~~A~ 289 (660)
.++++++.+ .+....++..+|.++...|++++|+.++++++++.+.. ..++.++|.++...|++++|+
T Consensus 164 ~~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~ 243 (338)
T 3ro2_A 164 DLYEENLSLVTALGDRAAQGRAFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGDKAAERRAYSNLGNAYIFLGEFETAS 243 (338)
T ss_dssp HHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHH
T ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHcCCHHHHH
Confidence 999999876 23346689999999999999999999999999886432 348999999999999999999
Q ss_pred HHHHHHHHhCCCC------HHHHHHHHHHHHHhcCCCHHHHHHHHHHHHcccCC
Q 006120 290 EVFQKAIDLKPGH------VDALYNLGGLYMDLGAGETEEAKKALKEALKMTNR 337 (660)
Q Consensus 290 ~~~~~al~~~p~~------~~a~~~La~~~~~~~~g~~~eA~~~~~~al~l~p~ 337 (660)
.++++++.+.+.. ..++..+|.++... |++++|..++++++++.+.
T Consensus 244 ~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~--g~~~~A~~~~~~a~~~~~~ 295 (338)
T 3ro2_A 244 EYYKKTLLLARQLKDRAVEAQSCYSLGNTYTLL--QDYEKAIDYHLKHLAIAQE 295 (338)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHT--TCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhhcchhHHHHHHHHHHHHHHHh--cCHHHHHHHHHHHHHHHHh
Confidence 9999999986654 67899999999999 9999999999999998754
No 51
>4i17_A Hypothetical protein; TPR repeats protein, structural genomics, joint center for S genomics, JCSG, protein structure initiative; HET: MSE; 1.83A {Bacteroides fragilis}
Probab=99.86 E-value=2.7e-20 Score=182.25 Aligned_cols=197 Identities=16% Similarity=0.156 Sum_probs=176.6
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhccCCCchhchHHHHH
Q 006120 126 DGHMAIGRVLYEHQLFKEALVSFKRACELQP-TDVRPHFRAGNCLYVLGRYREAKEEYLLALEAAETGGNQWAYLLPQIY 204 (660)
Q Consensus 126 ~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p-~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~ 204 (660)
..++.+|.+++..|++++|+..|+++++..| .+..+++.+|.++...|++++|+..++++++.+|. ...++
T Consensus 8 ~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~--------~~~~~ 79 (228)
T 4i17_A 8 NQLKNEGNDALNAKNYAVAFEKYSEYLKLTNNQDSVTAYNCGVCADNIKKYKEAADYFDIAIKKNYN--------LANAY 79 (228)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCS--------HHHHH
T ss_pred HHHHHHHHHHHHccCHHHHHHHHHHHHhccCCCCcHHHHHHHHHHHHhhcHHHHHHHHHHHHHhCcc--------hHHHH
Confidence 7889999999999999999999999999998 88999999999999999999999999999999998 89999
Q ss_pred HHHHHHHHHCCCHHHHHHHHHHHHHhCCCcH-------HHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCC--CHHHHHHH
Q 006120 205 VNLGIALEGEGMVLSACEYYRESAILCPTHF-------RALKLLGSALFGVGEYRAAVKALEEAIFIKPD--YADAHCDL 275 (660)
Q Consensus 205 ~~la~~~~~~g~~~~A~~~~~~al~~~p~~~-------~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~--~~~~~~~l 275 (660)
..+|.++..+|++++|+..+++++++.|+++ .++..+|.++...|++++|+..|+++++++|+ ++.++.++
T Consensus 80 ~~l~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~l 159 (228)
T 4i17_A 80 IGKSAAYRDMKNNQEYIATLTEGIKAVPGNATIEKLYAIYYLKEGQKFQQAGNIEKAEENYKHATDVTSKKWKTDALYSL 159 (228)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHTTSSCHHHHHHHHHHH
T ss_pred HHHHHHHHHcccHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHHhHHHHHhccHHHHHHHHHHHHhcCCCcccHHHHHHH
Confidence 9999999999999999999999999999998 67999999999999999999999999999999 89999999
Q ss_pred HHHHHhCCChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHcccCChh
Q 006120 276 ASALHAMGEDERAIEVFQKAIDLKPGHVDALYNLGGLYMDLGAGETEEAKKALKEALKMTNRVE 339 (660)
Q Consensus 276 a~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~La~~~~~~~~g~~~eA~~~~~~al~l~p~~~ 339 (660)
|.++..+| ...++++..+.+.....+..+ ..... +.+++|+.+++++++++|+..
T Consensus 160 ~~~~~~~~-----~~~~~~a~~~~~~~~~~~~~~--~~~~~--~~~~~A~~~~~~a~~l~p~~~ 214 (228)
T 4i17_A 160 GVLFYNNG-----ADVLRKATPLASSNKEKYASE--KAKAD--AAFKKAVDYLGEAVTLSPNRT 214 (228)
T ss_dssp HHHHHHHH-----HHHHHHHGGGTTTCHHHHHHH--HHHHH--HHHHHHHHHHHHHHHHCTTCH
T ss_pred HHHHHHHH-----HHHHHHHHhcccCCHHHHHHH--HHHHH--HHHHHHHHHHHHHhhcCCCCH
Confidence 99997654 455677777777765554433 34444 789999999999999998743
No 52
>2vq2_A PILW, putative fimbrial biogenesis and twitching motility protein; secretin, TPR repeat, type IV pilus, bacterail virulence; 1.54A {Neisseria meningitidis}
Probab=99.86 E-value=1.6e-19 Score=174.96 Aligned_cols=215 Identities=16% Similarity=0.050 Sum_probs=200.2
Q ss_pred chHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHhhccCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHH
Q 006120 84 SAEISEKRVFWEESTHDYAVFVKELGVLRNRADGARSREEAFDGHMAIGRVLYEHQLFKEALVSFKRACELQPTDVRPHF 163 (660)
Q Consensus 84 ~~~~~~~~~~l~~~~~~~g~~~~Al~~l~~a~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~ 163 (660)
.+.....+..++..+...|++.+|+..++++++..+... .++..+|.++...|++++|+.+|+++++..|.+..++.
T Consensus 4 ~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~---~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~ 80 (225)
T 2vq2_A 4 ANQVSNIKTQLAMEYMRGQDYRQATASIEDALKSDPKNE---LAWLVRAEIYQYLKVNDKAQESFRQALSIKPDSAEINN 80 (225)
T ss_dssp CCHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCH---HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHH
T ss_pred CcccHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhCccch---HHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCChHHHH
Confidence 345566777889999999999999999999999877664 78899999999999999999999999999999999999
Q ss_pred HHHHHHHHc-CCHHHHHHHHHHHHH--HhccCCCchhchHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCcHHHHHH
Q 006120 164 RAGNCLYVL-GRYREAKEEYLLALE--AAETGGNQWAYLLPQIYVNLGIALEGEGMVLSACEYYRESAILCPTHFRALKL 240 (660)
Q Consensus 164 ~la~~~~~~-g~~~~A~~~~~~al~--~~p~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~ 240 (660)
.+|.++... |++++|+..++++++ ..|. ...++..+|.++...|++++|+.+++++++..|.+..++..
T Consensus 81 ~l~~~~~~~~~~~~~A~~~~~~~~~~~~~~~--------~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~ 152 (225)
T 2vq2_A 81 NYGWFLCGRLNRPAESMAYFDKALADPTYPT--------PYIANLNKGICSAKQGQFGLAEAYLKRSLAAQPQFPPAFKE 152 (225)
T ss_dssp HHHHHHHTTTCCHHHHHHHHHHHHTSTTCSC--------HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHH
T ss_pred HHHHHHHHhcCcHHHHHHHHHHHHcCcCCcc--------hHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCchHHHH
Confidence 999999999 999999999999999 3333 67899999999999999999999999999999999999999
Q ss_pred HHHHHHHCCCHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHhCCChHHHHHHHHHHHHhCCCCHHHHHHH
Q 006120 241 LGSALFGVGEYRAAVKALEEAIFIKP-DYADAHCDLASALHAMGEDERAIEVFQKAIDLKPGHVDALYNL 309 (660)
Q Consensus 241 lg~~~~~~g~~~~A~~~~~~al~~~p-~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~L 309 (660)
+|.++...|++++|+..+++++...| .+...+..++.++...|+.++|..+++.+++..|+++.+...+
T Consensus 153 la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l 222 (225)
T 2vq2_A 153 LARTKMLAGQLGDADYYFKKYQSRVEVLQADDLLLGWKIAKALGNAQAAYEYEAQLQANFPYSEELQTVL 222 (225)
T ss_dssp HHHHHHHHTCHHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHH
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHhcCcHHHHHHHHHHHHHhCCCCHHHHHHh
Confidence 99999999999999999999999999 9999999999999999999999999999999999998876654
No 53
>1xnf_A Lipoprotein NLPI; TPR, tetratricopeptide, structural genomi unknown function; 1.98A {Escherichia coli} SCOP: a.118.8.1
Probab=99.86 E-value=1.5e-20 Score=188.77 Aligned_cols=264 Identities=14% Similarity=0.078 Sum_probs=217.4
Q ss_pred CcchhhccCchHHHHhccCchhhHHHHHHHHHHHHhhccCCcCCchHHhhhHHHHHHhCCchHHHHhHHHHHHHHHHHHH
Q 006120 24 TAAWAVSPNHGIVFDDTWKIVDDLEILVKRLKAKQAKDGKLKGDNSDAFSDAGWSRELGTSAEISEKRVFWEESTHDYAV 103 (660)
Q Consensus 24 p~~~~~~~~lg~~y~~~~~~~~al~~~~~~~~~a~~~~~~l~~~~~~a~~~~~~~~~l~~~~~~~~~~~~l~~~~~~~g~ 103 (660)
+.+|..+..++..+...+++.+++..+.+.++. .+ ...+.....+..++.++...|+
T Consensus 2 ~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~--------~~---------------~~~~~~~~~~~~l~~~~~~~~~ 58 (275)
T 1xnf_A 2 NTSWRKSEVLAVPLQPTLQQEVILARMEQILAS--------RA---------------LTDDERAQLLYERGVLYDSLGL 58 (275)
T ss_dssp -----CGGGSCCCCCCCHHHHHHHHHHHHHHTS--------SC---------------CCHHHHHHHHHHHHHHHHHTTC
T ss_pred CcccccCcceeeccCccchHHHHHHHHHHHHhc--------cc---------------ccCchhHHHHHHHHHHHHHccc
Confidence 345777777777777788888888888887772 00 1234456677788999999999
Q ss_pred HHHHHHHHHHHHhhccCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHH
Q 006120 104 FVKELGVLRNRADGARSREEAFDGHMAIGRVLYEHQLFKEALVSFKRACELQPTDVRPHFRAGNCLYVLGRYREAKEEYL 183 (660)
Q Consensus 104 ~~~Al~~l~~a~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~ 183 (660)
+.+|+..++++++..+... .++..+|.++...|++++|+.+|+++++..|.++.++..+|.++...|++++|+..++
T Consensus 59 ~~~A~~~~~~al~~~~~~~---~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~ 135 (275)
T 1xnf_A 59 RALARNDFSQALAIRPDMP---EVFNYLGIYLTQAGNFDAAYEAFDSVLELDPTYNYAHLNRGIALYYGGRDKLAQDDLL 135 (275)
T ss_dssp HHHHHHHHHHHHHHCCCCH---HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCCcH---HHHHHHHHHHHHccCHHHHHHHHHHHHhcCccccHHHHHHHHHHHHhccHHHHHHHHH
Confidence 9999999999999887764 7899999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHhccCCCchhchHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Q 006120 184 LALEAAETGGNQWAYLLPQIYVNLGIALEGEGMVLSACEYYRESAILCPTHFRALKLLGSALFGVGEYRAAVKALEEAIF 263 (660)
Q Consensus 184 ~al~~~p~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~ 263 (660)
+++++.|. .......++ +....|++++|+..+++++...|.+...+. ++.++...++.++|+..+++++.
T Consensus 136 ~a~~~~~~--------~~~~~~~~~-~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~a~~~~~~~~~ 205 (275)
T 1xnf_A 136 AFYQDDPN--------DPFRSLWLY-LAEQKLDEKQAKEVLKQHFEKSDKEQWGWN-IVEFYLGNISEQTLMERLKADAT 205 (275)
T ss_dssp HHHHHCTT--------CHHHHHHHH-HHHHHHCHHHHHHHHHHHHHHSCCCSTHHH-HHHHHTTSSCHHHHHHHHHHHCC
T ss_pred HHHHhCCC--------ChHHHHHHH-HHHHhcCHHHHHHHHHHHHhcCCcchHHHH-HHHHHHHhcCHHHHHHHHHHHhc
Confidence 99999988 333334444 336669999999999999999998866654 77888889999999999999988
Q ss_pred hCCCC----HHHHHHHHHHHHhCCChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCCCHHHHHHHH
Q 006120 264 IKPDY----ADAHCDLASALHAMGEDERAIEVFQKAIDLKPGHVDALYNLGGLYMDLGAGETEEAKKAL 328 (660)
Q Consensus 264 ~~p~~----~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~La~~~~~~~~g~~~eA~~~~ 328 (660)
..|.. ..++..+|.++..+|++++|+.+|+++++++|++...+ +.++..+ |++++|+..+
T Consensus 206 ~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~---~~~~~~l--~~~~~a~~~~ 269 (275)
T 1xnf_A 206 DNTSLAEHLSETNFYLGKYYLSLGDLDSATALFKLAVANNVHNFVEH---RYALLEL--SLLGQDQDDL 269 (275)
T ss_dssp SHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCCTTCHHH---HHHHHHH--HHHHHC----
T ss_pred ccccccccccHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCchhHHHH---HHHHHHH--HHHHhhHHHH
Confidence 87643 78999999999999999999999999999999774433 6777888 8999998887
No 54
>3ulq_A Response regulator aspartate phosphatase F; tetratricopeptide repeat, response regulator helix-turn-HELX binding, 3-helix bundle; 2.30A {Bacillus subtilis}
Probab=99.85 E-value=5.2e-20 Score=195.30 Aligned_cols=242 Identities=12% Similarity=0.117 Sum_probs=210.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhc---cCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-------CHH
Q 006120 91 RVFWEESTHDYAVFVKELGVLRNRADGA---RSREEAFDGHMAIGRVLYEHQLFKEALVSFKRACELQPT-------DVR 160 (660)
Q Consensus 91 ~~~l~~~~~~~g~~~~Al~~l~~a~~~~---~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~-------~~~ 160 (660)
+...|..+...|++++|+..++++++.. ++.+....+++.+|.++...|++++|+.++++++++.+. .+.
T Consensus 106 ~~~~g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~ 185 (383)
T 3ulq_A 106 NFFRGMYELDQREYLSAIKFFKKAESKLIFVKDRIEKAEFFFKMSESYYYMKQTYFSMDYARQAYEIYKEHEAYNIRLLQ 185 (383)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHTTGGGCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTCSTTHHHHHH
T ss_pred HHHHHHHHHHhcCHHHHHHHHHHHHHHHhhCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCccchHHHHH
Confidence 3447888899999999999999999874 445667899999999999999999999999999998443 346
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHhccCCCchhchHHHHHHHHHHHHHHCCCHHHHHHHHHHHHH-----hC-CCc
Q 006120 161 PHFRAGNCLYVLGRYREAKEEYLLALEAAETGGNQWAYLLPQIYVNLGIALEGEGMVLSACEYYRESAI-----LC-PTH 234 (660)
Q Consensus 161 ~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~-----~~-p~~ 234 (660)
++..+|.++..+|++++|+.++++++++.+..++... .+.++.++|.++..+|++++|+.+++++++ .+ |..
T Consensus 186 ~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~--~~~~~~~lg~~y~~~g~~~~A~~~~~~al~~~~~~~~~~~~ 263 (383)
T 3ulq_A 186 CHSLFATNFLDLKQYEDAISHFQKAYSMAEAEKQPQL--MGRTLYNIGLCKNSQSQYEDAIPYFKRAIAVFEESNILPSL 263 (383)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHH--HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCGGGH
T ss_pred HHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHcCChHH--HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhccchhH
Confidence 8999999999999999999999999999888765444 678999999999999999999999999999 46 778
Q ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-----CCCHHHHHHHHHHHHhCCC---hHHHHHHHHHHHHhCCCCHHHH
Q 006120 235 FRALKLLGSALFGVGEYRAAVKALEEAIFIK-----PDYADAHCDLASALHAMGE---DERAIEVFQKAIDLKPGHVDAL 306 (660)
Q Consensus 235 ~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-----p~~~~~~~~la~~~~~~g~---~~~A~~~~~~al~~~p~~~~a~ 306 (660)
+.++.++|.++...|++++|+.++++++++. |.....+..+|.++...|+ +++|+..+++. ...|....++
T Consensus 264 ~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~al~~~~~~-~~~~~~~~~~ 342 (383)
T 3ulq_A 264 PQAYFLITQIHYKLGKIDKAHEYHSKGMAYSQKAGDVIYLSEFEFLKSLYLSGPDEEAIQGFFDFLESK-MLYADLEDFA 342 (383)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHTSSCCHHHHHHHHHHHHHT-TCHHHHHHHH
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHC-cCHHHHHHHH
Confidence 8999999999999999999999999999984 3334446789999999999 78888888776 3334456789
Q ss_pred HHHHHHHHHhcCCCHHHHHHHHHHHHcccCC
Q 006120 307 YNLGGLYMDLGAGETEEAKKALKEALKMTNR 337 (660)
Q Consensus 307 ~~La~~~~~~~~g~~~eA~~~~~~al~l~p~ 337 (660)
..+|.+|... |++++|..++++++++...
T Consensus 343 ~~la~~y~~~--g~~~~A~~~~~~al~~~~~ 371 (383)
T 3ulq_A 343 IDVAKYYHER--KNFQKASAYFLKVEQVRQL 371 (383)
T ss_dssp HHHHHHHHHT--TCHHHHHHHHHHHHHHHTS
T ss_pred HHHHHHHHHC--CCHHHHHHHHHHHHHHHHH
Confidence 9999999999 9999999999999998754
No 55
>3mkr_A Coatomer subunit epsilon; tetratricopeptide repeats (TPR), beta-hairpin, alpha-solenoi transport protein; 2.60A {Bos taurus}
Probab=99.85 E-value=1.3e-19 Score=184.80 Aligned_cols=254 Identities=12% Similarity=0.022 Sum_probs=205.7
Q ss_pred CCcc-hhhccCchHHHHhccCchhhHHHHHHHHHHHHhhccCCcCCchHHhhhHHHHHHhCCchHHHHhHHHHHHHHHHH
Q 006120 23 RTAA-WAVSPNHGIVFDDTWKIVDDLEILVKRLKAKQAKDGKLKGDNSDAFSDAGWSRELGTSAEISEKRVFWEESTHDY 101 (660)
Q Consensus 23 ~p~~-~~~~~~lg~~y~~~~~~~~al~~~~~~~~~a~~~~~~l~~~~~~a~~~~~~~~~l~~~~~~~~~~~~l~~~~~~~ 101 (660)
+|.. .++...++.+|...|++.+++..+.. ..+........++..+...
T Consensus 29 ~p~~~~e~~~~l~r~yi~~g~~~~al~~~~~------------------------------~~~~~~~a~~~la~~~~~~ 78 (291)
T 3mkr_A 29 SPERDVERDVFLYRAYLAQRKYGVVLDEIKP------------------------------SSAPELQAVRMFAEYLASH 78 (291)
T ss_dssp SHHHHHHHHHHHHHHHHHTTCHHHHHHHSCT------------------------------TSCHHHHHHHHHHHHHHCS
T ss_pred CchhhHHHHHHHHHHHHHCCCHHHHHHHhcc------------------------------cCChhHHHHHHHHHHHcCC
Confidence 3443 34556667778777777666653311 0122345556667788888
Q ss_pred HHHHHHHHHHHHHHhh--ccCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHH
Q 006120 102 AVFVKELGVLRNRADG--ARSREEAFDGHMAIGRVLYEHQLFKEALVSFKRACELQPTDVRPHFRAGNCLYVLGRYREAK 179 (660)
Q Consensus 102 g~~~~Al~~l~~a~~~--~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~ 179 (660)
++.++|+..+++.+.. .|+. ..+++.+|.++...|++++|+..|++ |.++.++..+|.++..+|++++|+
T Consensus 79 ~~~~~A~~~l~~ll~~~~~P~~---~~~~~~la~~~~~~g~~~~Al~~l~~-----~~~~~~~~~l~~~~~~~g~~~~A~ 150 (291)
T 3mkr_A 79 SRRDAIVAELDREMSRSVDVTN---TTFLLMAASIYFYDQNPDAALRTLHQ-----GDSLECMAMTVQILLKLDRLDLAR 150 (291)
T ss_dssp TTHHHHHHHHHHHHHSCCCCSC---HHHHHHHHHHHHHTTCHHHHHHHHTT-----CCSHHHHHHHHHHHHHTTCHHHHH
T ss_pred CcHHHHHHHHHHHHhcccCCCC---HHHHHHHHHHHHHCCCHHHHHHHHhC-----CCCHHHHHHHHHHHHHCCCHHHHH
Confidence 8999999999998865 3444 37899999999999999999999998 899999999999999999999999
Q ss_pred HHHHHHHHHhccCCCchhchHHHHHHH--HHHHHHHCCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHCCCHHHHHHH
Q 006120 180 EEYLLALEAAETGGNQWAYLLPQIYVN--LGIALEGEGMVLSACEYYRESAILCPTHFRALKLLGSALFGVGEYRAAVKA 257 (660)
Q Consensus 180 ~~~~~al~~~p~~~~~~~~~~~~~~~~--la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~ 257 (660)
+.++++++.+|+. ...... +..++...|++++|+..|+++++..|+++.+++++|.++...|++++|+..
T Consensus 151 ~~l~~~~~~~p~~--------~~~~l~~a~~~l~~~~~~~~eA~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~eA~~~ 222 (291)
T 3mkr_A 151 KELKKMQDQDEDA--------TLTQLATAWVSLAAGGEKLQDAYYIFQEMADKCSPTLLLLNGQAACHMAQGRWEAAEGV 222 (291)
T ss_dssp HHHHHHHHHCTTC--------HHHHHHHHHHHHHHCTTHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred HHHHHHHhhCcCc--------HHHHHHHHHHHHHhCchHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHH
Confidence 9999999998872 222222 223444569999999999999999999999999999999999999999999
Q ss_pred HHHHHHhCCCCHHHHHHHHHHHHhCCChHH-HHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCCCHHHHHHHH
Q 006120 258 LEEAIFIKPDYADAHCDLASALHAMGEDER-AIEVFQKAIDLKPGHVDALYNLGGLYMDLGAGETEEAKKAL 328 (660)
Q Consensus 258 ~~~al~~~p~~~~~~~~la~~~~~~g~~~~-A~~~~~~al~~~p~~~~a~~~La~~~~~~~~g~~~eA~~~~ 328 (660)
++++++++|+++.++.++|.++..+|+.++ +..+++++++++|+++.+.. +..+. +.++++..-|
T Consensus 223 l~~al~~~p~~~~~l~~l~~~~~~~g~~~eaa~~~~~~~~~~~P~~~~~~d----~~~~~--~~fd~~~~~~ 288 (291)
T 3mkr_A 223 LQEALDKDSGHPETLINLVVLSQHLGKPPEVTNRYLSQLKDAHRSHPFIKE----YRAKE--NDFDRLVLQY 288 (291)
T ss_dssp HHHHHHHCTTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHCTTCHHHHH----HHHHH--HHHHHHHHHH
T ss_pred HHHHHHhCCCCHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHhCCCChHHHH----HHHHH--HHHHHHHHHc
Confidence 999999999999999999999999999986 57899999999999987653 33444 5666666554
No 56
>4i17_A Hypothetical protein; TPR repeats protein, structural genomics, joint center for S genomics, JCSG, protein structure initiative; HET: MSE; 1.83A {Bacteroides fragilis}
Probab=99.84 E-value=1.3e-19 Score=177.35 Aligned_cols=153 Identities=22% Similarity=0.183 Sum_probs=146.5
Q ss_pred CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhc-cCCCchhchHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCc
Q 006120 156 PTDVRPHFRAGNCLYVLGRYREAKEEYLLALEAAE-TGGNQWAYLLPQIYVNLGIALEGEGMVLSACEYYRESAILCPTH 234 (660)
Q Consensus 156 p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p-~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~ 234 (660)
+.++..++.+|.++...|++++|+..|++++++.| . ...+++.+|.++...|++++|+.+++++++.+|++
T Consensus 4 ~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~--------~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~ 75 (228)
T 4i17_A 4 TTDPNQLKNEGNDALNAKNYAVAFEKYSEYLKLTNNQ--------DSVTAYNCGVCADNIKKYKEAADYFDIAIKKNYNL 75 (228)
T ss_dssp CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTC--------CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCSH
T ss_pred ccCHHHHHHHHHHHHHccCHHHHHHHHHHHHhccCCC--------CcHHHHHHHHHHHHhhcHHHHHHHHHHHHHhCcch
Confidence 55789999999999999999999999999999998 5 56788889999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCH-------HHHHHHHHHHHhCCChHHHHHHHHHHHHhCCC--CHHH
Q 006120 235 FRALKLLGSALFGVGEYRAAVKALEEAIFIKPDYA-------DAHCDLASALHAMGEDERAIEVFQKAIDLKPG--HVDA 305 (660)
Q Consensus 235 ~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~-------~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~--~~~a 305 (660)
..++..+|.++..+|++++|+..+++++++.|+++ .++.++|.++..+|++++|+..|+++++++|+ ++.+
T Consensus 76 ~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~ 155 (228)
T 4i17_A 76 ANAYIGKSAAYRDMKNNQEYIATLTEGIKAVPGNATIEKLYAIYYLKEGQKFQQAGNIEKAEENYKHATDVTSKKWKTDA 155 (228)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHTTSSCHHHHHHH
T ss_pred HHHHHHHHHHHHHcccHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHHhHHHHHhccHHHHHHHHHHHHhcCCCcccHHH
Confidence 99999999999999999999999999999999998 67999999999999999999999999999999 9999
Q ss_pred HHHHHHHHHHh
Q 006120 306 LYNLGGLYMDL 316 (660)
Q Consensus 306 ~~~La~~~~~~ 316 (660)
+.++|.++...
T Consensus 156 ~~~l~~~~~~~ 166 (228)
T 4i17_A 156 LYSLGVLFYNN 166 (228)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHHH
Confidence 99999999887
No 57
>3nf1_A KLC 1, kinesin light chain 1; TPR, structural genomics consortium (SGC), motor PR transport protein; 2.80A {Homo sapiens}
Probab=99.84 E-value=2.7e-20 Score=190.07 Aligned_cols=251 Identities=14% Similarity=0.111 Sum_probs=202.4
Q ss_pred CchHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHhhcc-----CcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC--
Q 006120 83 TSAEISEKRVFWEESTHDYAVFVKELGVLRNRADGAR-----SREEAFDGHMAIGRVLYEHQLFKEALVSFKRACELQ-- 155 (660)
Q Consensus 83 ~~~~~~~~~~~l~~~~~~~g~~~~Al~~l~~a~~~~~-----~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-- 155 (660)
..+.....+..++.++...|++++|+..++++++... ..+....++..+|.++...|++++|+.+|+++++..
T Consensus 22 ~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~ 101 (311)
T 3nf1_A 22 EIPARLRTLHNLVIQYASQGRYEVAVPLCKQALEDLEKTSGHDHPDVATMLNILALVYRDQNKYKDAANLLNDALAIREK 101 (311)
T ss_dssp TSCHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHCSSSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHH
T ss_pred cchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHH
Confidence 4566777888889999999999999999999998643 467778899999999999999999999999999873
Q ss_pred ------CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhccC--CCchhchHHHHHHHHHHHHHHCCCHHHHHHHHHHH
Q 006120 156 ------PTDVRPHFRAGNCLYVLGRYREAKEEYLLALEAAETG--GNQWAYLLPQIYVNLGIALEGEGMVLSACEYYRES 227 (660)
Q Consensus 156 ------p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~--~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a 227 (660)
|....++..+|.++...|++++|+.++++++++.... .... ....++..+|.++...|++++|+.+++++
T Consensus 102 ~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~--~~~~~~~~la~~~~~~~~~~~A~~~~~~a 179 (311)
T 3nf1_A 102 TLGKDHPAVAATLNNLAVLYGKRGKYKEAEPLCKRALEIREKVLGKDHP--DVAKQLNNLALLCQNQGKYEEVEYYYQRA 179 (311)
T ss_dssp HHCTTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHCTTCH--HHHHHHHHHHHHHHTTTCHHHHHHHHHHH
T ss_pred HhCCCChHHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHHHHHhcCCCCh--HHHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 5567889999999999999999999999999986221 0111 17889999999999999999999999999
Q ss_pred HHh--------CCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCC---------C------HHHHHHHHHHHHhCCC
Q 006120 228 AIL--------CPTHFRALKLLGSALFGVGEYRAAVKALEEAIFIKPD---------Y------ADAHCDLASALHAMGE 284 (660)
Q Consensus 228 l~~--------~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~---------~------~~~~~~la~~~~~~g~ 284 (660)
+.. .|....++..+|.++...|++++|+.++++++++.+. . ...+..++..+...+.
T Consensus 180 ~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 259 (311)
T 3nf1_A 180 LEIYQTKLGPDDPNVAKTKNNLASCYLKQGKFKQAETLYKEILTRAHEREFGSVDDENKPIWMHAEEREECKGKQKDGTS 259 (311)
T ss_dssp HHHHHHTSCTTCHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHC------CCHHHHHHHHHHC-------CC
T ss_pred HHHHHHHhCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCCCcchHHHHHHHHHHHHhcCchhhHHH
Confidence 998 6677889999999999999999999999999986432 2 2334455556667778
Q ss_pred hHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHcccCC
Q 006120 285 DERAIEVFQKAIDLKPGHVDALYNLGGLYMDLGAGETEEAKKALKEALKMTNR 337 (660)
Q Consensus 285 ~~~A~~~~~~al~~~p~~~~a~~~La~~~~~~~~g~~~eA~~~~~~al~l~p~ 337 (660)
+.+|...+++++...|..+.++..+|.+|... |++++|..+|++++++.|+
T Consensus 260 ~~~a~~~~~~~~~~~~~~~~~~~~la~~~~~~--g~~~~A~~~~~~al~l~~~ 310 (311)
T 3nf1_A 260 FGEYGGWYKACKVDSPTVTTTLKNLGALYRRQ--GKFEAAETLEEAAMRSRKQ 310 (311)
T ss_dssp SCCCC---------CHHHHHHHHHHHHHHHHH--TCHHHHHHHHHHHHHHHC-
T ss_pred HHHHHHHHhhcCCCCchHHHHHHHHHHHHHHC--CCHHHHHHHHHHHHHHhhc
Confidence 88888999999999999999999999999999 9999999999999998764
No 58
>2ond_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 2.80A {Mus musculus} SCOP: a.118.8.7
Probab=99.84 E-value=3.4e-19 Score=183.28 Aligned_cols=220 Identities=12% Similarity=0.071 Sum_probs=201.4
Q ss_pred HHHHHHHHHHHhhccCcHHHHHHHHHHHHHHHH-------cCCH-------HHHHHHHHHHHH-hCCCCHHHHHHHHHHH
Q 006120 105 VKELGVLRNRADGARSREEAFDGHMAIGRVLYE-------HQLF-------KEALVSFKRACE-LQPTDVRPHFRAGNCL 169 (660)
Q Consensus 105 ~~Al~~l~~a~~~~~~~~~~~~~~~~lg~~~~~-------~g~~-------~~A~~~~~~al~-~~p~~~~~~~~la~~~ 169 (660)
.+|+..+++++...+..+ .+|+.+|..+.. .|++ ++|+..|+++++ +.|++..+|..+|.++
T Consensus 33 ~~a~~~~~~al~~~p~~~---~~w~~~~~~~~~~~~~l~~~g~~~~~~~~~~~A~~~~~rAl~~~~p~~~~~~~~~~~~~ 109 (308)
T 2ond_A 33 KRVMFAYEQCLLVLGHHP---DIWYEAAQYLEQSSKLLAEKGDMNNAKLFSDEAANIYERAISTLLKKNMLLYFAYADYE 109 (308)
T ss_dssp HHHHHHHHHHHHHHTTCH---HHHHHHHHHHHHHHHHHHHTSCCHHHHHHHHHHHHHHHHHHTTTTTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCCH---HHHHHHHHHHHHhchhhhhccchhhcccchHHHHHHHHHHHHHhCcccHHHHHHHHHHH
Confidence 688899999999888775 888899988864 5885 999999999999 7999999999999999
Q ss_pred HHcCCHHHHHHHHHHHHHHhccCCCchhchHHH-HHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHH-
Q 006120 170 YVLGRYREAKEEYLLALEAAETGGNQWAYLLPQ-IYVNLGIALEGEGMVLSACEYYRESAILCPTHFRALKLLGSALFG- 247 (660)
Q Consensus 170 ~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~-~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~- 247 (660)
...|++++|...|++++++.|. .+. ++..+|.++...|++++|...|+++++..|....++...+.+...
T Consensus 110 ~~~~~~~~A~~~~~~al~~~p~--------~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~~a~~~~~~ 181 (308)
T 2ond_A 110 ESRMKYEKVHSIYNRLLAIEDI--------DPTLVYIQYMKFARRAEGIKSGRMIFKKAREDARTRHHVYVTAALMEYYC 181 (308)
T ss_dssp HHTTCHHHHHHHHHHHHTSSSS--------CTHHHHHHHHHHHHHHHCHHHHHHHHHHHHTSTTCCTHHHHHHHHHHHHT
T ss_pred HhcCCHHHHHHHHHHHHhcccc--------CccHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHH
Confidence 9999999999999999999887 344 899999999999999999999999999999998888877776544
Q ss_pred CCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhCCChHHHHHHHHHHHHh---CC-CCHHHHHHHHHHHHHhcCCCHHH
Q 006120 248 VGEYRAAVKALEEAIFIKPDYADAHCDLASALHAMGEDERAIEVFQKAIDL---KP-GHVDALYNLGGLYMDLGAGETEE 323 (660)
Q Consensus 248 ~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~---~p-~~~~a~~~La~~~~~~~~g~~~e 323 (660)
.|++++|+..|+++++..|+++.+|..+|.++..+|++++|+..|++++.. .| +....|..++..+... |+.++
T Consensus 182 ~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~~l~p~~~~~l~~~~~~~~~~~--g~~~~ 259 (308)
T 2ond_A 182 SKDKSVAFKIFELGLKKYGDIPEYVLAYIDYLSHLNEDNNTRVLFERVLTSGSLPPEKSGEIWARFLAFESNI--GDLAS 259 (308)
T ss_dssp SCCHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCCHHHHHHHHHHHHHSSSSCGGGCHHHHHHHHHHHHHH--SCHHH
T ss_pred cCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHc--CCHHH
Confidence 799999999999999999999999999999999999999999999999996 55 3788999999999998 99999
Q ss_pred HHHHHHHHHcccCC
Q 006120 324 AKKALKEALKMTNR 337 (660)
Q Consensus 324 A~~~~~~al~l~p~ 337 (660)
|...++++++..|+
T Consensus 260 a~~~~~~a~~~~p~ 273 (308)
T 2ond_A 260 ILKVEKRRFTAFRE 273 (308)
T ss_dssp HHHHHHHHHHHTTT
T ss_pred HHHHHHHHHHHccc
Confidence 99999999999986
No 59
>4abn_A Tetratricopeptide repeat protein 5; P53 cofactor, stress-response, DNA repair, gene regulation; 2.05A {Mus musculus}
Probab=99.84 E-value=1.9e-19 Score=196.81 Aligned_cols=190 Identities=16% Similarity=0.141 Sum_probs=182.8
Q ss_pred CCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCH-HHHHHHHHHHHHHhccCCCchhchHHHHHHHHHHHHHHCCCH
Q 006120 139 QLFKEALVSFKRACELQPTDVRPHFRAGNCLYVLGRY-REAKEEYLLALEAAETGGNQWAYLLPQIYVNLGIALEGEGMV 217 (660)
Q Consensus 139 g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~-~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~la~~~~~~g~~ 217 (660)
+.+++++..+.+.....|..+.+++.+|.++...|++ ++|+..|+++++++|. .+.++..+|.++...|++
T Consensus 82 ~~~~~al~~l~~~~~~~~~~a~~~~~lg~~~~~~g~~~~~A~~~~~~al~~~p~--------~~~a~~~lg~~~~~~g~~ 153 (474)
T 4abn_A 82 EEMEKTLQQMEEVLGSAQVEAQALMLKGKALNVTPDYSPEAEVLLSKAVKLEPE--------LVEAWNQLGEVYWKKGDV 153 (474)
T ss_dssp HHHHHHHHHHHHHHTTCCCCHHHHHHHHHHHTSSSSCCHHHHHHHHHHHHHCTT--------CHHHHHHHHHHHHHHTCH
T ss_pred HHHHHHHHHHHHHhccCchhHHHHHHHHHHHHhccccHHHHHHHHHHHHhhCCC--------CHHHHHHHHHHHHHcCCH
Confidence 4578888899998888999999999999999999999 9999999999999998 789999999999999999
Q ss_pred HHHHHHHHHHHHhCCCcHHHHHHHHHHHHHC---------CCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhC------
Q 006120 218 LSACEYYRESAILCPTHFRALKLLGSALFGV---------GEYRAAVKALEEAIFIKPDYADAHCDLASALHAM------ 282 (660)
Q Consensus 218 ~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~---------g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~------ 282 (660)
++|+.+|+++++++|+ ..++.++|.++... |++++|+..|+++++++|+++.+|.++|.+|..+
T Consensus 154 ~~A~~~~~~al~~~p~-~~~~~~lg~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~~~~~ 232 (474)
T 4abn_A 154 TSAHTCFSGALTHCKN-KVSLQNLSMVLRQLQTDSGDEHSRHVMDSVRQAKLAVQMDVLDGRSWYILGNAYLSLYFNTGQ 232 (474)
T ss_dssp HHHHHHHHHHHTTCCC-HHHHHHHHHHHTTCCCSCHHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHHHhhCCC-HHHHHHHHHHHHHhccCChhhhhhhHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHhhcc
Confidence 9999999999999999 79999999999999 9999999999999999999999999999999999
Q ss_pred --CChHHHHHHHHHHHHhCC---CCHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHcccCChh
Q 006120 283 --GEDERAIEVFQKAIDLKP---GHVDALYNLGGLYMDLGAGETEEAKKALKEALKMTNRVE 339 (660)
Q Consensus 283 --g~~~~A~~~~~~al~~~p---~~~~a~~~La~~~~~~~~g~~~eA~~~~~~al~l~p~~~ 339 (660)
|++++|+.+|+++++++| +++.++.++|.+|..+ |++++|+..|+++++++|+..
T Consensus 233 ~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~lg~~~~~~--g~~~~A~~~~~~al~l~p~~~ 292 (474)
T 4abn_A 233 NPKISQQALSAYAQAEKVDRKASSNPDLHLNRATLHKYE--ESYGEALEGFSQAAALDPAWP 292 (474)
T ss_dssp CHHHHHHHHHHHHHHHHHCGGGGGCHHHHHHHHHHHHHT--TCHHHHHHHHHHHHHHCTTCH
T ss_pred ccchHHHHHHHHHHHHHhCCCcccCHHHHHHHHHHHHHc--CCHHHHHHHHHHHHHhCCCCH
Confidence 999999999999999999 9999999999999999 999999999999999998743
No 60
>1ouv_A Conserved hypothetical secreted protein; TPR repeat, HCP repeat, cysteine rich protein, loop-helix-TU repeat protein, hydrolase; 2.00A {Helicobacter pylori} SCOP: a.118.18.1
Probab=99.83 E-value=1.2e-18 Score=175.35 Aligned_cols=233 Identities=14% Similarity=0.092 Sum_probs=204.8
Q ss_pred CCcchhhccCchHHHHhccCchhhHHHHHHHHHHHHhhccCCcCCchHHhhhHHHHHHhCCchHHHHhHHHHHHHHHH--
Q 006120 23 RTAAWAVSPNHGIVFDDTWKIVDDLEILVKRLKAKQAKDGKLKGDNSDAFSDAGWSRELGTSAEISEKRVFWEESTHD-- 100 (660)
Q Consensus 23 ~p~~~~~~~~lg~~y~~~~~~~~al~~~~~~~~~a~~~~~~l~~~~~~a~~~~~~~~~l~~~~~~~~~~~~l~~~~~~-- 100 (660)
+|....+++.+|..|...+++.+++..++++++. .. ...+..++.++..
T Consensus 2 ~~~~~~a~~~lg~~~~~~~~~~~A~~~~~~a~~~----------~~-------------------~~a~~~lg~~~~~g~ 52 (273)
T 1ouv_A 2 AEQDPKELVGLGAKSYKEKDFTQAKKYFEKACDL----------KE-------------------NSGCFNLGVLYYQGQ 52 (273)
T ss_dssp ---CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHT----------TC-------------------HHHHHHHHHHHHHTS
T ss_pred CCCChHHHHHHHHHHHhCCCHHHHHHHHHHHHHC----------CC-------------------HHHHHHHHHHHHcCC
Confidence 4677888999999999999999999999888771 11 1234556777888
Q ss_pred --HHHHHHHHHHHHHHHhhccCcHHHHHHHHHHHHHHHH----cCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH---
Q 006120 101 --YAVFVKELGVLRNRADGARSREEAFDGHMAIGRVLYE----HQLFKEALVSFKRACELQPTDVRPHFRAGNCLYV--- 171 (660)
Q Consensus 101 --~g~~~~Al~~l~~a~~~~~~~~~~~~~~~~lg~~~~~----~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~--- 171 (660)
.+++.+|+..++++++.. ...+++.+|.++.. .+++++|+.+|+++++.. ++.++..+|.+|..
T Consensus 53 ~~~~~~~~A~~~~~~a~~~~-----~~~a~~~lg~~~~~g~~~~~~~~~A~~~~~~a~~~~--~~~a~~~lg~~~~~~~~ 125 (273)
T 1ouv_A 53 GVEKNLKKAASFYAKACDLN-----YSNGCHLLGNLYYSGQGVSQNTNKALQYYSKACDLK--YAEGCASLGGIYHDGKV 125 (273)
T ss_dssp SSCCCHHHHHHHHHHHHHTT-----CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT--CHHHHHHHHHHHHHCSS
T ss_pred CcCCCHHHHHHHHHHHHHCC-----CHHHHHHHHHHHhCCCCcccCHHHHHHHHHHHHHcC--CccHHHHHHHHHHcCCC
Confidence 899999999999998863 34889999999999 999999999999999874 89999999999999
Q ss_pred -cCCHHHHHHHHHHHHHHhccCCCchhchHHHHHHHHHHHHHH----CCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHH
Q 006120 172 -LGRYREAKEEYLLALEAAETGGNQWAYLLPQIYVNLGIALEG----EGMVLSACEYYRESAILCPTHFRALKLLGSALF 246 (660)
Q Consensus 172 -~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~la~~~~~----~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~ 246 (660)
.+++++|+.+|+++++..+ +.++.++|.++.. .+++++|+.+|+++++. .++.++..+|.++.
T Consensus 126 ~~~~~~~A~~~~~~a~~~~~----------~~a~~~lg~~~~~~~~~~~~~~~A~~~~~~a~~~--~~~~a~~~lg~~~~ 193 (273)
T 1ouv_A 126 VTRDFKKAVEYFTKACDLND----------GDGCTILGSLYDAGRGTPKDLKKALASYDKACDL--KDSPGCFNAGNMYH 193 (273)
T ss_dssp SCCCHHHHHHHHHHHHHTTC----------HHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHT--TCHHHHHHHHHHHH
T ss_pred cccCHHHHHHHHHHHHhcCc----------HHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHC--CCHHHHHHHHHHHH
Confidence 9999999999999999753 4788999999999 99999999999999987 46889999999999
Q ss_pred H----CCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHh----CCChHHHHHHHHHHHHhCCCCHHH
Q 006120 247 G----VGEYRAAVKALEEAIFIKPDYADAHCDLASALHA----MGEDERAIEVFQKAIDLKPGHVDA 305 (660)
Q Consensus 247 ~----~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~----~g~~~~A~~~~~~al~~~p~~~~a 305 (660)
. .+++++|+.+|+++++..| +.++.++|.+|.. .+++++|+.+|++++++.|..+..
T Consensus 194 ~g~~~~~~~~~A~~~~~~a~~~~~--~~a~~~l~~~~~~g~~~~~~~~~A~~~~~~a~~~~~~~a~~ 258 (273)
T 1ouv_A 194 HGEGATKNFKEALARYSKACELEN--GGGCFNLGAMQYNGEGVTRNEKQAIENFKKGCKLGAKGACD 258 (273)
T ss_dssp HTCSSCCCHHHHHHHHHHHHHTTC--HHHHHHHHHHHHTTSSSSCCSTTHHHHHHHHHHHTCHHHHH
T ss_pred cCCCCCccHHHHHHHHHHHHhCCC--HHHHHHHHHHHHcCCCcccCHHHHHHHHHHHHHcCCHHHHH
Confidence 9 9999999999999999866 8899999999999 999999999999999998865433
No 61
>3q15_A PSP28, response regulator aspartate phosphatase H; tetratricopeptide repeat, 3-helix bundle, phosphorelay signa transduction, phosphatase; 2.19A {Bacillus subtilis}
Probab=99.83 E-value=5.3e-19 Score=187.26 Aligned_cols=242 Identities=16% Similarity=0.140 Sum_probs=209.8
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHhhcc---CcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-------CH
Q 006120 90 KRVFWEESTHDYAVFVKELGVLRNRADGAR---SREEAFDGHMAIGRVLYEHQLFKEALVSFKRACELQPT-------DV 159 (660)
Q Consensus 90 ~~~~l~~~~~~~g~~~~Al~~l~~a~~~~~---~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~-------~~ 159 (660)
.+...|..+...|++.+|+..++++++..+ +.+..+.+++.+|.++...|++++|+.++++++++.+. .+
T Consensus 103 ~~~~~g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~y~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~ 182 (378)
T 3q15_A 103 SLFFRGMYEFDQKEYVEAIGYYREAEKELPFVSDDIEKAEFHFKVAEAYYHMKQTHVSMYHILQALDIYQNHPLYSIRTI 182 (378)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHTTGGGCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTSTTCHHHHH
T ss_pred HHHHHHHHHHHHCCHHHHHHHHHHHHHHHhhCCChHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHhCCCchhhHH
Confidence 456678888999999999999999998754 45677889999999999999999999999999987542 25
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHhccCCCchhchHHHHHHHHHHHHHHCCCHHHHHHHHHHHHH-----hCCCc
Q 006120 160 RPHFRAGNCLYVLGRYREAKEEYLLALEAAETGGNQWAYLLPQIYVNLGIALEGEGMVLSACEYYRESAI-----LCPTH 234 (660)
Q Consensus 160 ~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~-----~~p~~ 234 (660)
.++..+|.++...|++++|+.++++++++.+..++... .+.++.++|.++..+|++++|+.++++++. .+|..
T Consensus 183 ~~~~~lg~~y~~~~~~~~A~~~~~~al~~~~~~~~~~~--~~~~~~~lg~~y~~~~~~~~A~~~~~~al~~~~~~~~~~~ 260 (378)
T 3q15_A 183 QSLFVIAGNYDDFKHYDKALPHLEAALELAMDIQNDRF--IAISLLNIANSYDRSGDDQMAVEHFQKAAKVSREKVPDLL 260 (378)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHH--HHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHCGGGH
T ss_pred HHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHcCCHHH--HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhCChhH
Confidence 67889999999999999999999999999876655443 778999999999999999999999999999 67888
Q ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCC-----CCHHHHHHHHHHHHhCCC---hHHHHHHHHHHHHhCCCCHHHH
Q 006120 235 FRALKLLGSALFGVGEYRAAVKALEEAIFIKP-----DYADAHCDLASALHAMGE---DERAIEVFQKAIDLKPGHVDAL 306 (660)
Q Consensus 235 ~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p-----~~~~~~~~la~~~~~~g~---~~~A~~~~~~al~~~p~~~~a~ 306 (660)
+.++.++|.++...|++++|+.++++++++.+ .....+..++.++...++ +.+|+.++++. ...|.....+
T Consensus 261 ~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~l~~ly~~~~~~~~~~~al~~~~~~-~~~~~~~~~~ 339 (378)
T 3q15_A 261 PKVLFGLSWTLCKAGQTQKAFQFIEEGLDHITARSHKFYKELFLFLQAVYKETVDERKIHDLLSYFEKK-NLHAYIEACA 339 (378)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCTTCCSCHHHHHHHHHHHHSSSCCHHHHHHHHHHHHHT-TCHHHHHHHH
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHhC-CChhHHHHHH
Confidence 89999999999999999999999999999854 335567788889989998 88888888772 2234446688
Q ss_pred HHHHHHHHHhcCCCHHHHHHHHHHHHcccC
Q 006120 307 YNLGGLYMDLGAGETEEAKKALKEALKMTN 336 (660)
Q Consensus 307 ~~La~~~~~~~~g~~~eA~~~~~~al~l~p 336 (660)
..+|.+|... |++++|..+|++++++..
T Consensus 340 ~~la~~y~~~--g~~~~A~~~~~~al~~~~ 367 (378)
T 3q15_A 340 RSAAAVFESS--CHFEQAAAFYRKVLKAQE 367 (378)
T ss_dssp HHHHHHHHHT--TCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHC--CCHHHHHHHHHHHHHHHH
Confidence 8999999999 999999999999998753
No 62
>1qqe_A Vesicular transport protein SEC17; helix-turn-helix TPR-like repeat, protein transport; 2.90A {Saccharomyces cerevisiae} SCOP: a.118.8.1
Probab=99.83 E-value=2.9e-19 Score=182.37 Aligned_cols=208 Identities=14% Similarity=0.061 Sum_probs=174.4
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHhCCC------CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhccCCCchhchHHH
Q 006120 129 MAIGRVLYEHQLFKEALVSFKRACELQPT------DVRPHFRAGNCLYVLGRYREAKEEYLLALEAAETGGNQWAYLLPQ 202 (660)
Q Consensus 129 ~~lg~~~~~~g~~~~A~~~~~~al~~~p~------~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~ 202 (660)
...|.++...|++++|+.+|.+++++.+. .+.++.++|.+|..+|++++|+.+|++++++.+..+.... .+.
T Consensus 41 ~~a~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~Al~l~~~~g~~~~--~a~ 118 (292)
T 1qqe_A 41 VQAATIYRLRKELNLAGDSFLKAADYQKKAGNEDEAGNTYVEAYKCFKSGGNSVNAVDSLENAIQIFTHRGQFRR--GAN 118 (292)
T ss_dssp HHHHHHHHHTTCTHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHH--HHH
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHcCCHHH--HHH
Confidence 33467888999999999999999998532 2578999999999999999999999999999988665443 578
Q ss_pred HHHHHHHHHHHC-CCHHHHHHHHHHHHHhCCCc------HHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHH-----
Q 006120 203 IYVNLGIALEGE-GMVLSACEYYRESAILCPTH------FRALKLLGSALFGVGEYRAAVKALEEAIFIKPDYAD----- 270 (660)
Q Consensus 203 ~~~~la~~~~~~-g~~~~A~~~~~~al~~~p~~------~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~----- 270 (660)
++.++|.++... |++++|+.+|++++++.|.. ..++.++|.++..+|++++|+.+|++++.+.|++..
T Consensus 119 ~~~~lg~~~~~~lg~~~~A~~~~~~Al~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~ 198 (292)
T 1qqe_A 119 FKFELGEILENDLHDYAKAIDCYELAGEWYAQDQSVALSNKCFIKCADLKALDGQYIEASDIYSKLIKSSMGNRLSQWSL 198 (292)
T ss_dssp HHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTSSCTTTGGGH
T ss_pred HHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHhCCChHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHhcCCcccHHH
Confidence 899999999996 99999999999999997754 567899999999999999999999999999987643
Q ss_pred --HHHHHHHHHHhCCChHHHHHHHHHHHHhCCCCHH-----HHHHHHHHHHHhcCCCHHHHHHHHHHHHcccCCh
Q 006120 271 --AHCDLASALHAMGEDERAIEVFQKAIDLKPGHVD-----ALYNLGGLYMDLGAGETEEAKKALKEALKMTNRV 338 (660)
Q Consensus 271 --~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~-----a~~~La~~~~~~~~g~~~eA~~~~~~al~l~p~~ 338 (660)
++.++|.++..+|++++|+.+|+++++++|+... .+..++..+.....+++++|+..|++++.++|..
T Consensus 199 ~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~~~l~~l~~~~~~~~~~~~~~A~~~~~~~~~l~~~~ 273 (292)
T 1qqe_A 199 KDYFLKKGLCQLAATDAVAAARTLQEGQSEDPNFADSRESNFLKSLIDAVNEGDSEQLSEHCKEFDNFMRLDKWK 273 (292)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHGGGCC---------HHHHHHHHHHHHTTCTTTHHHHHHHHTTSSCCCHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCCCcHHHHHHHHHHHHHHcCCHHHHHHHHHHhccCCccHHHH
Confidence 6889999999999999999999999999998765 3455666665222378999999999999988753
No 63
>3qky_A Outer membrane assembly lipoprotein YFIO; membrane protein; 2.15A {Rhodothermus marinus}
Probab=99.82 E-value=3.4e-19 Score=178.39 Aligned_cols=188 Identities=18% Similarity=0.124 Sum_probs=144.4
Q ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC---HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhccCCCchhchH
Q 006120 124 AFDGHMAIGRVLYEHQLFKEALVSFKRACELQPTD---VRPHFRAGNCLYVLGRYREAKEEYLLALEAAETGGNQWAYLL 200 (660)
Q Consensus 124 ~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~---~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~ 200 (660)
....++.+|..++..|++++|+..|+++++..|++ +.+++.+|.++...|++++|+..|+++++..|+... .
T Consensus 14 ~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~a~~~lg~~~~~~~~~~~A~~~~~~~l~~~p~~~~-----~ 88 (261)
T 3qky_A 14 SPQEAFERAMEFYNQGKYDRAIEYFKAVFTYGRTHEWAADAQFYLARAYYQNKEYLLAASEYERFIQIYQIDPR-----V 88 (261)
T ss_dssp SHHHHHHHHHHHHHTTCHHHHHHHHHHHGGGCSCSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTT-----H
T ss_pred CHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCCCcchHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHCCCCch-----h
Confidence 35889999999999999999999999999999998 899999999999999999999999999999986543 6
Q ss_pred HHHHHHHHHHHHH--------CCCHHHHHHHHHHHHHhCCCcHHHH-----------------HHHHHHHHHCCCHHHHH
Q 006120 201 PQIYVNLGIALEG--------EGMVLSACEYYRESAILCPTHFRAL-----------------KLLGSALFGVGEYRAAV 255 (660)
Q Consensus 201 ~~~~~~la~~~~~--------~g~~~~A~~~~~~al~~~p~~~~~~-----------------~~lg~~~~~~g~~~~A~ 255 (660)
+.+++.+|.++.. .|++++|+..|++++...|++..+. +.+|.++...|++++|+
T Consensus 89 ~~a~~~lg~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~a~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~ 168 (261)
T 3qky_A 89 PQAEYERAMCYYKLSPPYELDQTDTRKAIEAFQLFIDRYPNHELVDDATQKIRELRAKLARKQYEAARLYERRELYEAAA 168 (261)
T ss_dssp HHHHHHHHHHHHHHCCCTTSCCHHHHHHHHHHHHHHHHCTTCTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHH
T ss_pred HHHHHHHHHHHHHhcccccccchhHHHHHHHHHHHHHHCcCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCHHHHH
Confidence 7899999999999 9999999999999999999886555 55556666666666666
Q ss_pred HHHHHHHHhCCC---CHHHHHHHHHHHHhC----------CChHHHHHHHHHHHHhCCCCH---HHHHHHHHHHHHh
Q 006120 256 KALEEAIFIKPD---YADAHCDLASALHAM----------GEDERAIEVFQKAIDLKPGHV---DALYNLGGLYMDL 316 (660)
Q Consensus 256 ~~~~~al~~~p~---~~~~~~~la~~~~~~----------g~~~~A~~~~~~al~~~p~~~---~a~~~La~~~~~~ 316 (660)
..|+++++..|+ ...++..+|.+|..+ |++++|+..|+++++..|+++ .+...++.++..+
T Consensus 169 ~~~~~~l~~~p~~~~~~~a~~~l~~~~~~~g~~~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~a~~~l~~~~~~~ 245 (261)
T 3qky_A 169 VTYEAVFDAYPDTPWADDALVGAMRAYIAYAEQSVRARQPERYRRAVELYERLLQIFPDSPLLRTAEELYTRARQRL 245 (261)
T ss_dssp HHHHHHHHHCTTSTTHHHHHHHHHHHHHHHHHTSCGGGHHHHHHHHHHHHHHHHHHCTTCTHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHCCCCchHHHHHHHHHHHHHHhcccchhhcccchHHHHHHHHHHHHHHCCCChHHHHHHHHHHHHHHHH
Confidence 666666665555 244555555555544 555555555555555555552 2334444444433
No 64
>3nf1_A KLC 1, kinesin light chain 1; TPR, structural genomics consortium (SGC), motor PR transport protein; 2.80A {Homo sapiens}
Probab=99.82 E-value=8.6e-20 Score=186.31 Aligned_cols=271 Identities=13% Similarity=0.031 Sum_probs=210.7
Q ss_pred chhHhhHhhhcCCcchhhccCchHHHHhccCchhhHHHHHHHHHHHHhhccCCcCCchHHhhhHHHHHHhCCchHHHHhH
Q 006120 12 DERAIESQKKQRTAAWAVSPNHGIVFDDTWKIVDDLEILVKRLKAKQAKDGKLKGDNSDAFSDAGWSRELGTSAEISEKR 91 (660)
Q Consensus 12 ~~~~~~~~~~~~p~~~~~~~~lg~~y~~~~~~~~al~~~~~~~~~a~~~~~~l~~~~~~a~~~~~~~~~l~~~~~~~~~~ 91 (660)
.....+.....+|..+.++.++|.+|...|++.+++..+.++++..... .....+.....+
T Consensus 12 ~~~~~q~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~-------------------~~~~~~~~~~~~ 72 (311)
T 3nf1_A 12 ENLYFQGGGYEIPARLRTLHNLVIQYASQGRYEVAVPLCKQALEDLEKT-------------------SGHDHPDVATML 72 (311)
T ss_dssp GGGSCSSSCTTSCHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHH-------------------HCSSSHHHHHHH
T ss_pred ccccccCCCCcchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHH-------------------cCCCCHHHHHHH
Confidence 3345666778899999999999999999999999999999998831110 011345566777
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhc-----cCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC--------CCC
Q 006120 92 VFWEESTHDYAVFVKELGVLRNRADGA-----RSREEAFDGHMAIGRVLYEHQLFKEALVSFKRACELQ--------PTD 158 (660)
Q Consensus 92 ~~l~~~~~~~g~~~~Al~~l~~a~~~~-----~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~--------p~~ 158 (660)
..++.++...|++++|+..+++++... ++.+....++..+|.++...|++++|+.+|+++++.. |..
T Consensus 73 ~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~ 152 (311)
T 3nf1_A 73 NILALVYRDQNKYKDAANLLNDALAIREKTLGKDHPAVAATLNNLAVLYGKRGKYKEAEPLCKRALEIREKVLGKDHPDV 152 (311)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHCTTCHHH
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHHHHHhcCCCChHH
Confidence 888999999999999999999999876 5567788999999999999999999999999999874 556
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhccCCCchhchHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCC-----
Q 006120 159 VRPHFRAGNCLYVLGRYREAKEEYLLALEAAETGGNQWAYLLPQIYVNLGIALEGEGMVLSACEYYRESAILCPT----- 233 (660)
Q Consensus 159 ~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~----- 233 (660)
..++..+|.++...|++++|+.+++++++...............++..+|.++...|++++|+.+++++++..|.
T Consensus 153 ~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~ 232 (311)
T 3nf1_A 153 AKQLNNLALLCQNQGKYEEVEYYYQRALEIYQTKLGPDDPNVAKTKNNLASCYLKQGKFKQAETLYKEILTRAHEREFGS 232 (311)
T ss_dssp HHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHTSCTTCHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHC-
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCC
Confidence 778999999999999999999999999998433211111117889999999999999999999999999986432
Q ss_pred ----c------HHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhCCChHHHHHHHHHHHHhCCC
Q 006120 234 ----H------FRALKLLGSALFGVGEYRAAVKALEEAIFIKPDYADAHCDLASALHAMGEDERAIEVFQKAIDLKPG 301 (660)
Q Consensus 234 ----~------~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~ 301 (660)
. ...+..++..+...+.+.+|...+.+++...|....++..+|.+|..+|++++|+.++++++++.|+
T Consensus 233 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~l~~~ 310 (311)
T 3nf1_A 233 VDDENKPIWMHAEEREECKGKQKDGTSFGEYGGWYKACKVDSPTVTTTLKNLGALYRRQGKFEAAETLEEAAMRSRKQ 310 (311)
T ss_dssp -----CCHHHHHHHHHHC-------CCSCCCC---------CHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHC-
T ss_pred CCcchHHHHHHHHHHHHhcCchhhHHHHHHHHHHHhhcCCCCchHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHhhc
Confidence 1 2344445555666777888888999999999999999999999999999999999999999998775
No 65
>3urz_A Uncharacterized protein; tetratricopeptide repeats (TPR) containing protein, structur genomics, joint center for structural genomics, JCSG; HET: PG4; 2.19A {Bacteroides ovatus}
Probab=99.81 E-value=1.3e-18 Score=168.10 Aligned_cols=199 Identities=14% Similarity=0.132 Sum_probs=158.9
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhccCCCchhchHHHHH
Q 006120 125 FDGHMAIGRVLYEHQLFKEALVSFKRACELQPTDVRPHFRAGNCLYVLGRYREAKEEYLLALEAAETGGNQWAYLLPQIY 204 (660)
Q Consensus 125 ~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~ 204 (660)
++.++..|..++..|++++|+..|+++++.+|+++.+++..+. .+. . ...+...
T Consensus 4 ~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~-----~~~----------~-----------~~~~~~~ 57 (208)
T 3urz_A 4 VDEMLQKVSAAIEAGQNGQAVSYFRQTIALNIDRTEMYYWTNV-----DKN----------S-----------EISSKLA 57 (208)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCHHHHHHHHHHHS-----CTT----------S-----------HHHHHHH
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCChHHHHHhhh-----cch----------h-----------hhhHHHH
Confidence 4566777777788888888888888888877777766655331 000 0 0034555
Q ss_pred HHHHHHHHHCCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhCCC
Q 006120 205 VNLGIALEGEGMVLSACEYYRESAILCPTHFRALKLLGSALFGVGEYRAAVKALEEAIFIKPDYADAHCDLASALHAMGE 284 (660)
Q Consensus 205 ~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~ 284 (660)
..+|.++...|++++|+..|+++++++|+++.++..+|.++...|++++|+..|+++++++|+++.++.++|.+|...|+
T Consensus 58 ~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~lg~~~~~~~~ 137 (208)
T 3urz_A 58 TELALAYKKNRNYDKAYLFYKELLQKAPNNVDCLEACAEMQVCRGQEKDALRMYEKILQLEADNLAANIFLGNYYYLTAE 137 (208)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHhH
Confidence 66999999999999999999999999999999999999999999999999999999999999999999999999987664
Q ss_pred --hHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHcccCChhHHHHHHHHHHHHH
Q 006120 285 --DERAIEVFQKAIDLKPGHVDALYNLGGLYMDLGAGETEEAKKALKEALKMTNRVELHDAVSHLKQLQK 352 (660)
Q Consensus 285 --~~~A~~~~~~al~~~p~~~~a~~~La~~~~~~~~g~~~eA~~~~~~al~l~p~~~~~~~~~~l~~l~~ 352 (660)
...+...+++++...|. ..+++.+|.++... |++++|+.+|++++++.|+.+....+..+..+.+
T Consensus 138 ~~~~~~~~~~~~~~~~~~~-~~a~~~~g~~~~~~--~~~~~A~~~~~~al~l~P~~~~~~~l~~i~~~~~ 204 (208)
T 3urz_A 138 QEKKKLETDYKKLSSPTKM-QYARYRDGLSKLFT--TRYEKARNSLQKVILRFPSTEAQKTLDKILRIEK 204 (208)
T ss_dssp HHHHHHHHHHC---CCCHH-HHHHHHHHHHHHHH--HTHHHHHHHHHHHTTTSCCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhCCCch-hHHHHHHHHHHHHc--cCHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHH
Confidence 45667777777643332 34788899999998 9999999999999999999887777766655544
No 66
>3as5_A MAMA; tetratricopeptide repeats (TPR) containing protein, TPR PROT protein-protein interactions, protein binding; 2.00A {Magnetospirillum magnetotacticum} PDB: 3as4_A 3asd_A 3asg_A 3ash_A 3as8_A 3asf_A
Probab=99.80 E-value=3.2e-18 Score=160.14 Aligned_cols=171 Identities=20% Similarity=0.208 Sum_probs=113.0
Q ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhccCCCchhchHHHH
Q 006120 124 AFDGHMAIGRVLYEHQLFKEALVSFKRACELQPTDVRPHFRAGNCLYVLGRYREAKEEYLLALEAAETGGNQWAYLLPQI 203 (660)
Q Consensus 124 ~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~ 203 (660)
....+..+|..+...|++++|+..++++++..|.+..++..+|.++...|++++|+..++++++..|. ...+
T Consensus 7 ~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~--------~~~~ 78 (186)
T 3as5_A 7 RQVYYRDKGISHAKAGRYSQAVMLLEQVYDADAFDVDVALHLGIAYVKTGAVDRGTELLERSLADAPD--------NVKV 78 (186)
T ss_dssp HHHHHHHHHHHHHHHTCHHHHHHHHTTTCCTTSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT--------CHHH
T ss_pred hhHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCccChHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCC--------CHHH
Confidence 34556666777777777777777777776666666666666676666667777776666666666665 4556
Q ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhCC
Q 006120 204 YVNLGIALEGEGMVLSACEYYRESAILCPTHFRALKLLGSALFGVGEYRAAVKALEEAIFIKPDYADAHCDLASALHAMG 283 (660)
Q Consensus 204 ~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g 283 (660)
+..+|.++...|++++|+.++++++...|.+..++..+|.++...|++++|+..+++++...|+++.++..+|.++...|
T Consensus 79 ~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~ 158 (186)
T 3as5_A 79 ATVLGLTYVQVQKYDLAVPLLIKVAEANPINFNVRFRLGVALDNLGRFDEAIDSFKIALGLRPNEGKVHRAIAFSYEQMG 158 (186)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHhcCHHHHHHHHHHHHhcCcHhHHHHHHHHHHHHHcCcHHHHHHHHHHHHhcCccchHHHHHHHHHHHHcC
Confidence 66666666666666666666666666666666666666666666666666666666666666666666666666666666
Q ss_pred ChHHHHHHHHHHHHhCCCC
Q 006120 284 EDERAIEVFQKAIDLKPGH 302 (660)
Q Consensus 284 ~~~~A~~~~~~al~~~p~~ 302 (660)
++++|+.+++++++..|++
T Consensus 159 ~~~~A~~~~~~~~~~~~~~ 177 (186)
T 3as5_A 159 RHEEALPHFKKANELDEGA 177 (186)
T ss_dssp CHHHHHHHHHHHHHHHHCC
T ss_pred CHHHHHHHHHHHHHcCCCc
Confidence 6666666666666665544
No 67
>3ulq_A Response regulator aspartate phosphatase F; tetratricopeptide repeat, response regulator helix-turn-HELX binding, 3-helix bundle; 2.30A {Bacillus subtilis}
Probab=99.79 E-value=1.5e-17 Score=176.33 Aligned_cols=202 Identities=14% Similarity=0.094 Sum_probs=175.3
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHh---CCC---CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhccCCC-chhc
Q 006120 126 DGHMAIGRVLYEHQLFKEALVSFKRACEL---QPT---DVRPHFRAGNCLYVLGRYREAKEEYLLALEAAETGGN-QWAY 198 (660)
Q Consensus 126 ~~~~~lg~~~~~~g~~~~A~~~~~~al~~---~p~---~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~-~~~~ 198 (660)
..++.+|..+...|++++|+.+|++++++ .++ .+.++..+|.++...|++++|+.++.+++++.+...+ ...
T Consensus 104 ~~~~~~g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~- 182 (383)
T 3ulq_A 104 YFNFFRGMYELDQREYLSAIKFFKKAESKLIFVKDRIEKAEFFFKMSESYYYMKQTYFSMDYARQAYEIYKEHEAYNIR- 182 (383)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHTTGGGCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTCSTTHHH-
T ss_pred HHHHHHHHHHHHhcCHHHHHHHHHHHHHHHhhCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCccchHH-
Confidence 35667999999999999999999999987 222 4688999999999999999999999999999887654 222
Q ss_pred hHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCc------HHHHHHHHHHHHHCCCHHHHHHHHHHHHHh-----C-C
Q 006120 199 LLPQIYVNLGIALEGEGMVLSACEYYRESAILCPTH------FRALKLLGSALFGVGEYRAAVKALEEAIFI-----K-P 266 (660)
Q Consensus 199 ~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~------~~~~~~lg~~~~~~g~~~~A~~~~~~al~~-----~-p 266 (660)
.+.++.++|.++..+|++++|+.++++++++.+.. ..++.++|.++..+|++++|+.++++++++ + |
T Consensus 183 -~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~g~~~~A~~~~~~al~~~~~~~~~~ 261 (383)
T 3ulq_A 183 -LLQCHSLFATNFLDLKQYEDAISHFQKAYSMAEAEKQPQLMGRTLYNIGLCKNSQSQYEDAIPYFKRAIAVFEESNILP 261 (383)
T ss_dssp -HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCGG
T ss_pred -HHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhccch
Confidence 67899999999999999999999999999875432 358999999999999999999999999994 5 7
Q ss_pred CCHHHHHHHHHHHHhCCChHHHHHHHHHHHHhC-----CCCHHHHHHHHHHHHHhcCCC---HHHHHHHHHHH
Q 006120 267 DYADAHCDLASALHAMGEDERAIEVFQKAIDLK-----PGHVDALYNLGGLYMDLGAGE---TEEAKKALKEA 331 (660)
Q Consensus 267 ~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~-----p~~~~a~~~La~~~~~~~~g~---~~eA~~~~~~a 331 (660)
..+.++.++|.++..+|++++|+.++++++++. |.....+..++.++... |+ +++|+..+++.
T Consensus 262 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~l~~~~~~~--~~~~~~~~al~~~~~~ 332 (383)
T 3ulq_A 262 SLPQAYFLITQIHYKLGKIDKAHEYHSKGMAYSQKAGDVIYLSEFEFLKSLYLSG--PDEEAIQGFFDFLESK 332 (383)
T ss_dssp GHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHTSS--CCHHHHHHHHHHHHHT
T ss_pred hHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhCC--CcHHHHHHHHHHHHHC
Confidence 778999999999999999999999999999984 33344567899999987 88 77777777766
No 68
>2pzi_A Probable serine/threonine-protein kinase PKNG; ATP-recognition, kinase-INH complex, rubredoxin fold, TPR domain, transferase; HET: AXX; 2.40A {Mycobacterium tuberculosis}
Probab=99.79 E-value=1e-18 Score=199.59 Aligned_cols=179 Identities=15% Similarity=-0.020 Sum_probs=169.7
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHH--------HhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhccCCCchh
Q 006120 126 DGHMAIGRVLYEHQLFKEALVSFKRAC--------ELQPTDVRPHFRAGNCLYVLGRYREAKEEYLLALEAAETGGNQWA 197 (660)
Q Consensus 126 ~~~~~lg~~~~~~g~~~~A~~~~~~al--------~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~ 197 (660)
.+++..| ...|++++|+..|++++ +.+|++..+++.+|.++..+|++++|+..|+++++.+|+
T Consensus 395 ~a~~~~a---~~~~~~~~A~~~~~~al~~~~~~~~~~~p~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~------ 465 (681)
T 2pzi_A 395 AASVLQA---TVLSQPVQTLDSLRAARHGALDADGVDFSESVELPLMEVRALLDLGDVAKATRKLDDLAERVGW------ 465 (681)
T ss_dssp THHHHHH---TTTCCHHHHHHHHHHHHTC-------CCTTCSHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHCC------
T ss_pred chHHhhc---ccccCHHHHHHHHHHhhhhcccccccccccchhHHHHHHHHHHhcCCHHHHHHHHHHHhccCcc------
Confidence 4445555 78899999999999999 889999999999999999999999999999999999999
Q ss_pred chHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHH
Q 006120 198 YLLPQIYVNLGIALEGEGMVLSACEYYRESAILCPTHFRALKLLGSALFGVGEYRAAVKALEEAIFIKPDYADAHCDLAS 277 (660)
Q Consensus 198 ~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~ 277 (660)
...+++++|.++..+|++++|+..|+++++++|+++.++.++|.++..+|++++ +..|+++++++|++..+|+++|.
T Consensus 466 --~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~P~~~~~~~~lg~~~~~~g~~~~-~~~~~~al~~~P~~~~a~~~lg~ 542 (681)
T 2pzi_A 466 --RWRLVWYRAVAELLTGDYDSATKHFTEVLDTFPGELAPKLALAATAELAGNTDE-HKFYQTVWSTNDGVISAAFGLAR 542 (681)
T ss_dssp --CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSTTCSHHHHHHHHHHHHHTCCCT-TCHHHHHHHHCTTCHHHHHHHHH
T ss_pred --hHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHcCChHH-HHHHHHHHHhCCchHHHHHHHHH
Confidence 789999999999999999999999999999999999999999999999999999 99999999999999999999999
Q ss_pred HHHhCCChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHh
Q 006120 278 ALHAMGEDERAIEVFQKAIDLKPGHVDALYNLGGLYMDL 316 (660)
Q Consensus 278 ~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~La~~~~~~ 316 (660)
++..+|++++|+..|+++++++|++..++.++|.++...
T Consensus 543 ~~~~~g~~~~A~~~~~~al~l~P~~~~a~~~~~~~~~~~ 581 (681)
T 2pzi_A 543 ARSAEGDRVGAVRTLDEVPPTSRHFTTARLTSAVTLLSG 581 (681)
T ss_dssp HHHHTTCHHHHHHHHHTSCTTSTTHHHHHHHHHHHTC--
T ss_pred HHHHcCCHHHHHHHHHhhcccCcccHHHHHHHHHHHHcc
Confidence 999999999999999999999999999999999999765
No 69
>4ga2_A E3 SUMO-protein ligase ranbp2; TPR motif, nuclear pore complex component nucleocytoplasmic transport, transport protein; 0.95A {Pan troglodytes} PDB: 4ga0_A 4ga1_A*
Probab=99.79 E-value=5.6e-19 Score=161.25 Aligned_cols=145 Identities=12% Similarity=-0.030 Sum_probs=133.5
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHHHhccCCCchhchHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCcHHHHHHHHH
Q 006120 164 RAGNCLYVLGRYREAKEEYLLALEAAETGGNQWAYLLPQIYVNLGIALEGEGMVLSACEYYRESAILCPTHFRALKLLGS 243 (660)
Q Consensus 164 ~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~ 243 (660)
.||.++...|++++|+..+++++...|. .+..++.+|.+|...|++++|+.+|+++++++|+++.+|..+|.
T Consensus 2 ~LG~~~~~~~~~e~ai~~~~~a~~~~p~--------~~~~~~~la~~y~~~~~~~~A~~~~~~al~~~p~~~~a~~~lg~ 73 (150)
T 4ga2_A 2 PLGSMRRSKADVERYIASVQGSTPSPRQ--------KSIKGFYFAKLYYEAKEYDLAKKYICTYINVQERDPKAHRFLGL 73 (150)
T ss_dssp -----CCCHHHHHHHHHHHHHHSCSHHH--------HHTTHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHH
T ss_pred HhHHHHHHcChHHHHHHHHHHhcccCcc--------cHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHH
Confidence 4788889999999999999999999998 88899999999999999999999999999999999999999999
Q ss_pred HHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhCCChHHHHHH-HHHHHHhCCCCHHHHHHHHHHHHHh
Q 006120 244 ALFGVGEYRAAVKALEEAIFIKPDYADAHCDLASALHAMGEDERAIEV-FQKAIDLKPGHVDALYNLGGLYMDL 316 (660)
Q Consensus 244 ~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~-~~~al~~~p~~~~a~~~La~~~~~~ 316 (660)
++...|++++|+..|+++++++|+++.++.++|.++..+|++++|... ++++++++|+++.++..++.++...
T Consensus 74 ~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~aa~~~~~~al~l~P~~~~~~~l~~~ll~~~ 147 (150)
T 4ga2_A 74 LYELEENTDKAVECYRRSVELNPTQKDLVLKIAELLCKNDVTDGRAKYWVERAAKLFPGSPAVYKLKEQLLDCE 147 (150)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHCSSSSHHHHHHHHHHHHSTTCHHHHHHHHHHHHTC
T ss_pred HHHHcCchHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHHhCcCCHHHHHHHHHHHHHh
Confidence 999999999999999999999999999999999999999999887765 5999999999999999999998876
No 70
>2xm6_A Protein corresponding to locus C5321 from CFT073 strain; unknown function, SEL1-like repeats; 1.68A {Escherichia coli}
Probab=99.79 E-value=1e-16 Score=175.91 Aligned_cols=279 Identities=17% Similarity=0.093 Sum_probs=224.0
Q ss_pred CcchhhccCchHHHHh----ccCchhhHHHHHHHHHHHHhhccCCcCCchHHhhhHHHHHHh----CCc-----------
Q 006120 24 TAAWAVSPNHGIVFDD----TWKIVDDLEILVKRLKAKQAKDGKLKGDNSDAFSDAGWSREL----GTS----------- 84 (660)
Q Consensus 24 p~~~~~~~~lg~~y~~----~~~~~~al~~~~~~~~~a~~~~~~l~~~~~~a~~~~~~~~~l----~~~----------- 84 (660)
.....+++++|.+|.. .+++.+++..++++.+. ....++..++..+.. ..+
T Consensus 108 ~~~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~a~~~----------~~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~a 177 (490)
T 2xm6_A 108 KGLPQAQQNLGVMYHEGNGVKVDKAESVKWFRLAAEQ----------GRDSGQQSMGDAYFEGDGVTRDYVMAREWYSKA 177 (490)
T ss_dssp TTCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHT----------TCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHC----------CCHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHH
Confidence 3566778899999998 77888888888887662 122333333332221 010
Q ss_pred --hHHHHhHHHHHHHHHH----HHHHHHHHHHHHHHHhhccCcHHHHHHHHHHHHHHHH----cCCHHHHHHHHHHHHHh
Q 006120 85 --AEISEKRVFWEESTHD----YAVFVKELGVLRNRADGARSREEAFDGHMAIGRVLYE----HQLFKEALVSFKRACEL 154 (660)
Q Consensus 85 --~~~~~~~~~l~~~~~~----~g~~~~Al~~l~~a~~~~~~~~~~~~~~~~lg~~~~~----~g~~~~A~~~~~~al~~ 154 (660)
.........++.++.. .+++.+|+..++++.+.. + ..+++.+|.++.. .+++++|+.+|+++++.
T Consensus 178 ~~~~~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~a~~~~--~---~~a~~~lg~~y~~g~g~~~~~~~A~~~~~~a~~~ 252 (490)
T 2xm6_A 178 AEQGNVWSCNQLGYMYSRGLGVERNDAISAQWYRKSATSG--D---ELGQLHLADMYYFGIGVTQDYTQSRVLFSQSAEQ 252 (490)
T ss_dssp HHTTCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT--C---HHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHTT
T ss_pred HHCCCHHHHHHHHHHHhcCCCCCcCHHHHHHHHHHHHHCC--C---HHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHC
Confidence 0123456666777776 788899999999888642 2 3678889999987 88999999999998875
Q ss_pred CCCCHHHHHHHHHHHHH----cCCHHHHHHHHHHHHHHhccCCCchhchHHHHHHHHHHHHHHC-----CCHHHHHHHHH
Q 006120 155 QPTDVRPHFRAGNCLYV----LGRYREAKEEYLLALEAAETGGNQWAYLLPQIYVNLGIALEGE-----GMVLSACEYYR 225 (660)
Q Consensus 155 ~p~~~~~~~~la~~~~~----~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~la~~~~~~-----g~~~~A~~~~~ 225 (660)
.++.+++.+|.++.. .+++++|+.+|+++++.. .+.+++.+|.++... +++++|+.+|+
T Consensus 253 --~~~~a~~~lg~~y~~g~~~~~d~~~A~~~~~~a~~~~----------~~~a~~~Lg~~y~~~~~g~~~~~~~A~~~~~ 320 (490)
T 2xm6_A 253 --GNSIAQFRLGYILEQGLAGAKEPLKALEWYRKSAEQG----------NSDGQYYLAHLYDKGAEGVAKNREQAISWYT 320 (490)
T ss_dssp --TCHHHHHHHHHHHHHTTTSSCCHHHHHHHHHHHHTTT----------CHHHHHHHHHHHHHCBTTBCCCHHHHHHHHH
T ss_pred --CCHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHcC----------CHHHHHHHHHHHHcCCCCCcCCHHHHHHHHH
Confidence 568899999999998 899999999999998653 457888999999988 89999999999
Q ss_pred HHHHhCCCcHHHHHHHHHHHHHCC---CHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHh----CCChHHHHHHHHHHHHh
Q 006120 226 ESAILCPTHFRALKLLGSALFGVG---EYRAAVKALEEAIFIKPDYADAHCDLASALHA----MGEDERAIEVFQKAIDL 298 (660)
Q Consensus 226 ~al~~~p~~~~~~~~lg~~~~~~g---~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~----~g~~~~A~~~~~~al~~ 298 (660)
++++. .++.+++++|.++...| ++++|+.+|+++++. +++.+++++|.+|.. .+++++|+.+|+++++.
T Consensus 321 ~a~~~--~~~~a~~~lg~~y~~~g~~~~~~~A~~~~~~a~~~--~~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~A~~~ 396 (490)
T 2xm6_A 321 KSAEQ--GDATAQANLGAIYFRLGSEEEHKKAVEWFRKAAAK--GEKAAQFNLGNALLQGKGVKKDEQQAAIWMRKAAEQ 396 (490)
T ss_dssp HHHHT--TCHHHHHHHHHHHHHSCCHHHHHHHHHHHHHHHHT--TCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHT
T ss_pred HHHhc--CCHHHHHHHHHHHHhCCCcccHHHHHHHHHHHHHC--CCHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHhC
Confidence 99876 56788999999999877 889999999999987 678999999999998 89999999999999886
Q ss_pred CCCCHHHHHHHHHHHHH----hcCCCHHHHHHHHHHHHcccCC
Q 006120 299 KPGHVDALYNLGGLYMD----LGAGETEEAKKALKEALKMTNR 337 (660)
Q Consensus 299 ~p~~~~a~~~La~~~~~----~~~g~~~eA~~~~~~al~l~p~ 337 (660)
.++.++++||.+|.. . +++++|..+|+++++..|+
T Consensus 397 --~~~~a~~~Lg~~y~~g~g~~--~d~~~A~~~~~~A~~~~~~ 435 (490)
T 2xm6_A 397 --GLSAAQVQLGEIYYYGLGVE--RDYVQAWAWFDTASTNDMN 435 (490)
T ss_dssp --TCHHHHHHHHHHHHHTSSSC--CCHHHHHHHHHHHHHHHCC
T ss_pred --CCHHHHHHHHHHHHcCCCCC--CCHHHHHHHHHHHHHCCCC
Confidence 468899999999997 6 8999999999999999865
No 71
>1qqe_A Vesicular transport protein SEC17; helix-turn-helix TPR-like repeat, protein transport; 2.90A {Saccharomyces cerevisiae} SCOP: a.118.8.1
Probab=99.78 E-value=5e-18 Score=173.16 Aligned_cols=223 Identities=15% Similarity=0.059 Sum_probs=182.8
Q ss_pred HhHHHHHHHHHHHHHHHHHHHHHHHHHhhcc---CcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC------H
Q 006120 89 EKRVFWEESTHDYAVFVKELGVLRNRADGAR---SREEAFDGHMAIGRVLYEHQLFKEALVSFKRACELQPTD------V 159 (660)
Q Consensus 89 ~~~~~l~~~~~~~g~~~~Al~~l~~a~~~~~---~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~------~ 159 (660)
..+...+.++...|++++|+..+.++++..+ +.+....++.++|.++...|++++|+.+|++++++.|.. +
T Consensus 38 ~~~~~a~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~Al~l~~~~g~~~~~a 117 (292)
T 1qqe_A 38 DLCVQAATIYRLRKELNLAGDSFLKAADYQKKAGNEDEAGNTYVEAYKCFKSGGNSVNAVDSLENAIQIFTHRGQFRRGA 117 (292)
T ss_dssp HHHHHHHHHHHHTTCTHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHcCCHHHHH
Confidence 3444446778889999999999999998753 445557899999999999999999999999999987643 5
Q ss_pred HHHHHHHHHHHHc-CCHHHHHHHHHHHHHHhccCCCchhchHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCcHH--
Q 006120 160 RPHFRAGNCLYVL-GRYREAKEEYLLALEAAETGGNQWAYLLPQIYVNLGIALEGEGMVLSACEYYRESAILCPTHFR-- 236 (660)
Q Consensus 160 ~~~~~la~~~~~~-g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~-- 236 (660)
.++.++|.+|... |++++|+.+|++++++.|....... ...++.++|.++..+|++++|+.+|++++.+.|++..
T Consensus 118 ~~~~~lg~~~~~~lg~~~~A~~~~~~Al~~~~~~~~~~~--~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~ 195 (292)
T 1qqe_A 118 NFKFELGEILENDLHDYAKAIDCYELAGEWYAQDQSVAL--SNKCFIKCADLKALDGQYIEASDIYSKLIKSSMGNRLSQ 195 (292)
T ss_dssp HHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTTCHHH--HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTSSCTTTG
T ss_pred HHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHhCCChHH--HHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHhcCCccc
Confidence 6899999999996 9999999999999999987554332 4678999999999999999999999999999887643
Q ss_pred -----HHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHH-----HHHHHHHHHH--hCCChHHHHHHHHHHHHhCCCCHH
Q 006120 237 -----ALKLLGSALFGVGEYRAAVKALEEAIFIKPDYAD-----AHCDLASALH--AMGEDERAIEVFQKAIDLKPGHVD 304 (660)
Q Consensus 237 -----~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~-----~~~~la~~~~--~~g~~~~A~~~~~~al~~~p~~~~ 304 (660)
++.++|.++..+|++++|+.+|+++++++|+... .+..++..+. ..+++++|+..|++++.++|....
T Consensus 196 ~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~~~l~~l~~~~~~~~~~~~~~A~~~~~~~~~l~~~~~~ 275 (292)
T 1qqe_A 196 WSLKDYFLKKGLCQLAATDAVAAARTLQEGQSEDPNFADSRESNFLKSLIDAVNEGDSEQLSEHCKEFDNFMRLDKWKIT 275 (292)
T ss_dssp GGHHHHHHHHHHHHHHTTCHHHHHHHHHGGGCC---------HHHHHHHHHHHHTTCTTTHHHHHHHHTTSSCCCHHHHH
T ss_pred HHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCCCcHHHHHHHHHHHHHHcCCHHHHHHHHHHhccCCccHHHHHH
Confidence 6889999999999999999999999999998654 3455666665 567899999999999999887766
Q ss_pred HHHHHHHHH
Q 006120 305 ALYNLGGLY 313 (660)
Q Consensus 305 a~~~La~~~ 313 (660)
.+..+-..+
T Consensus 276 ~~~~~k~~~ 284 (292)
T 1qqe_A 276 ILNKIKESI 284 (292)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHh
Confidence 655555444
No 72
>3qky_A Outer membrane assembly lipoprotein YFIO; membrane protein; 2.15A {Rhodothermus marinus}
Probab=99.78 E-value=1.1e-17 Score=167.32 Aligned_cols=197 Identities=16% Similarity=0.119 Sum_probs=170.6
Q ss_pred HHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhccCCCchhchHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC
Q 006120 152 CELQPTDVRPHFRAGNCLYVLGRYREAKEEYLLALEAAETGGNQWAYLLPQIYVNLGIALEGEGMVLSACEYYRESAILC 231 (660)
Q Consensus 152 l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~ 231 (660)
.+..|.++..++.+|..+...|++++|+..|+++++..|.... .+.+++.+|.++..+|++++|+..|+++++..
T Consensus 8 ~~~~~~~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~-----~~~a~~~lg~~~~~~~~~~~A~~~~~~~l~~~ 82 (261)
T 3qky_A 8 GRLRHSSPQEAFERAMEFYNQGKYDRAIEYFKAVFTYGRTHEW-----AADAQFYLARAYYQNKEYLLAASEYERFIQIY 82 (261)
T ss_dssp ---CCSSHHHHHHHHHHHHHTTCHHHHHHHHHHHGGGCSCSTT-----HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC
T ss_pred CCCCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCCCcc-----hHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHC
Confidence 3467889999999999999999999999999999999987432 47899999999999999999999999999998
Q ss_pred CCc---HHHHHHHHHHHHH--------CCCHHHHHHHHHHHHHhCCCCHHHH-----------------HHHHHHHHhCC
Q 006120 232 PTH---FRALKLLGSALFG--------VGEYRAAVKALEEAIFIKPDYADAH-----------------CDLASALHAMG 283 (660)
Q Consensus 232 p~~---~~~~~~lg~~~~~--------~g~~~~A~~~~~~al~~~p~~~~~~-----------------~~la~~~~~~g 283 (660)
|++ ..+++.+|.++.. .|++++|+..|++++...|++..+. +.+|.+|..+|
T Consensus 83 p~~~~~~~a~~~lg~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~a~~~~~~~~~~~~~~~~~la~~~~~~g 162 (261)
T 3qky_A 83 QIDPRVPQAEYERAMCYYKLSPPYELDQTDTRKAIEAFQLFIDRYPNHELVDDATQKIRELRAKLARKQYEAARLYERRE 162 (261)
T ss_dssp TTCTTHHHHHHHHHHHHHHHCCCTTSCCHHHHHHHHHHHHHHHHCTTCTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHTT
T ss_pred CCCchhHHHHHHHHHHHHHhcccccccchhHHHHHHHHHHHHHHCcCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHcc
Confidence 854 7789999999999 9999999999999999999986555 88999999999
Q ss_pred ChHHHHHHHHHHHHhCCC---CHHHHHHHHHHHHHhc--------CCCHHHHHHHHHHHHcccCChh-HHHHHHHHHHHH
Q 006120 284 EDERAIEVFQKAIDLKPG---HVDALYNLGGLYMDLG--------AGETEEAKKALKEALKMTNRVE-LHDAVSHLKQLQ 351 (660)
Q Consensus 284 ~~~~A~~~~~~al~~~p~---~~~a~~~La~~~~~~~--------~g~~~eA~~~~~~al~l~p~~~-~~~~~~~l~~l~ 351 (660)
++++|+..|+++++..|+ .+.+++.+|.+|..++ .|++++|+..|+++++..|+.. ...+...+..+.
T Consensus 163 ~~~~A~~~~~~~l~~~p~~~~~~~a~~~l~~~~~~~g~~~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~a~~~l~~~~ 242 (261)
T 3qky_A 163 LYEAAAVTYEAVFDAYPDTPWADDALVGAMRAYIAYAEQSVRARQPERYRRAVELYERLLQIFPDSPLLRTAEELYTRAR 242 (261)
T ss_dssp CHHHHHHHHHHHHHHCTTSTTHHHHHHHHHHHHHHHHHTSCGGGHHHHHHHHHHHHHHHHHHCTTCTHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHCCCCchHHHHHHHHHHHHHHhcccchhhcccchHHHHHHHHHHHHHHCCCChHHHHHHHHHHHHH
Confidence 999999999999999998 4679999999998541 1788999999999999999754 344555554444
Q ss_pred HH
Q 006120 352 KK 353 (660)
Q Consensus 352 ~~ 353 (660)
..
T Consensus 243 ~~ 244 (261)
T 3qky_A 243 QR 244 (261)
T ss_dssp HH
T ss_pred HH
Confidence 43
No 73
>3as5_A MAMA; tetratricopeptide repeats (TPR) containing protein, TPR PROT protein-protein interactions, protein binding; 2.00A {Magnetospirillum magnetotacticum} PDB: 3as4_A 3asd_A 3asg_A 3ash_A 3as8_A 3asf_A
Probab=99.78 E-value=9.1e-18 Score=156.99 Aligned_cols=171 Identities=23% Similarity=0.249 Sum_probs=164.3
Q ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhccCCCchhchHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCcHHH
Q 006120 158 DVRPHFRAGNCLYVLGRYREAKEEYLLALEAAETGGNQWAYLLPQIYVNLGIALEGEGMVLSACEYYRESAILCPTHFRA 237 (660)
Q Consensus 158 ~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~ 237 (660)
....+..+|.++...|++++|+..++++++..|. ...++..+|.++...|++++|+.+++++++..|.+..+
T Consensus 7 ~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~--------~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~ 78 (186)
T 3as5_A 7 RQVYYRDKGISHAKAGRYSQAVMLLEQVYDADAF--------DVDVALHLGIAYVKTGAVDRGTELLERSLADAPDNVKV 78 (186)
T ss_dssp HHHHHHHHHHHHHHHTCHHHHHHHHTTTCCTTSC--------CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHH
T ss_pred hhHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCcc--------ChHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHH
Confidence 3567889999999999999999999999999887 67899999999999999999999999999999999999
Q ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhCCChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhc
Q 006120 238 LKLLGSALFGVGEYRAAVKALEEAIFIKPDYADAHCDLASALHAMGEDERAIEVFQKAIDLKPGHVDALYNLGGLYMDLG 317 (660)
Q Consensus 238 ~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~La~~~~~~~ 317 (660)
+..+|.++...|++++|+..+++++...|++..++..+|.++...|++++|+.+++++++..|.++.++..+|.++...
T Consensus 79 ~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~- 157 (186)
T 3as5_A 79 ATVLGLTYVQVQKYDLAVPLLIKVAEANPINFNVRFRLGVALDNLGRFDEAIDSFKIALGLRPNEGKVHRAIAFSYEQM- 157 (186)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHT-
T ss_pred HHHHHHHHHHhcCHHHHHHHHHHHHhcCcHhHHHHHHHHHHHHHcCcHHHHHHHHHHHHhcCccchHHHHHHHHHHHHc-
Confidence 9999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCHHHHHHHHHHHHcccCCh
Q 006120 318 AGETEEAKKALKEALKMTNRV 338 (660)
Q Consensus 318 ~g~~~eA~~~~~~al~l~p~~ 338 (660)
|++++|..++++++++.|+.
T Consensus 158 -~~~~~A~~~~~~~~~~~~~~ 177 (186)
T 3as5_A 158 -GRHEEALPHFKKANELDEGA 177 (186)
T ss_dssp -TCHHHHHHHHHHHHHHHHCC
T ss_pred -CCHHHHHHHHHHHHHcCCCc
Confidence 99999999999999998764
No 74
>3edt_B KLC 2, kinesin light chain 2; superhelical, structural genomics, structural genomics conso SGC, microtubule, motor protein, phosphoprotein; 2.70A {Homo sapiens} PDB: 3ceq_A
Probab=99.78 E-value=2.1e-18 Score=173.03 Aligned_cols=229 Identities=17% Similarity=0.161 Sum_probs=181.7
Q ss_pred HHHHHHHHHHHHHhhccCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC--------CCCHHHHHHHHHHHHHcCC
Q 006120 103 VFVKELGVLRNRADGARSREEAFDGHMAIGRVLYEHQLFKEALVSFKRACELQ--------PTDVRPHFRAGNCLYVLGR 174 (660)
Q Consensus 103 ~~~~Al~~l~~a~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~--------p~~~~~~~~la~~~~~~g~ 174 (660)
.+.+|+..+.+... .+.+....++..+|.++...|++++|+.+|+++++.. |....++..+|.++...|+
T Consensus 23 ~~~~al~~~~~~~~--~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~ 100 (283)
T 3edt_B 23 LCKQALEDLEKTSG--HDHPDVATMLNILALVYRDQNKYKEAAHLLNDALAIREKTLGKDHPAVAATLNNLAVLYGKRGK 100 (283)
T ss_dssp HHHHHHHHHHHHHC--SSSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCTTCHHHHHHHHHHHHHHHTTTC
T ss_pred HHHHHHHHHHHhcC--CCCHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHcCCcchHHHHHHHHHHHHHHHhcc
Confidence 34445555444432 3457778999999999999999999999999999873 5567899999999999999
Q ss_pred HHHHHHHHHHHHHHhccCCCchhchHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh--------CCCcHHHHHHHHHHHH
Q 006120 175 YREAKEEYLLALEAAETGGNQWAYLLPQIYVNLGIALEGEGMVLSACEYYRESAIL--------CPTHFRALKLLGSALF 246 (660)
Q Consensus 175 ~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~--------~p~~~~~~~~lg~~~~ 246 (660)
+++|+.++++++++..............++.++|.++...|++++|+.++++++.+ .|....++..+|.++.
T Consensus 101 ~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~ 180 (283)
T 3edt_B 101 YKEAEPLCKRALEIREKVLGKFHPDVAKQLNNLALLCQNQGKAEEVEYYYRRALEIYATRLGPDDPNVAKTKNNLASCYL 180 (283)
T ss_dssp HHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHSCTTCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHH
Confidence 99999999999998522111000117899999999999999999999999999998 6777889999999999
Q ss_pred HCCCHHHHHHHHHHHHHh---------CCCCHHHHHHHHHHHHhCCChHHHHH------HHHHHHHhCCCCHHHHHHHHH
Q 006120 247 GVGEYRAAVKALEEAIFI---------KPDYADAHCDLASALHAMGEDERAIE------VFQKAIDLKPGHVDALYNLGG 311 (660)
Q Consensus 247 ~~g~~~~A~~~~~~al~~---------~p~~~~~~~~la~~~~~~g~~~~A~~------~~~~al~~~p~~~~a~~~La~ 311 (660)
..|++++|+.++++++++ .+.....+..++..+...+....+.. .++......|....++..+|.
T Consensus 181 ~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~ 260 (283)
T 3edt_B 181 KQGKYQDAETLYKEILTRAHEKEFGSVNGDNKPIWMHAEEREESKDKRRDSAPYGEYGSWYKACKVDSPTVNTTLRSLGA 260 (283)
T ss_dssp HHTCHHHHHHHHHHHHHHHHHHHSSSCCSSCCCHHHHHHHHHHTTCCCCC------------CCCCCCHHHHHHHHHHHH
T ss_pred HcCCHHHHHHHHHHHHHHHHHhcCCCcchhHHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHH
Confidence 999999999999999987 45556778888888776665544433 333322234556779999999
Q ss_pred HHHHhcCCCHHHHHHHHHHHHccc
Q 006120 312 LYMDLGAGETEEAKKALKEALKMT 335 (660)
Q Consensus 312 ~~~~~~~g~~~eA~~~~~~al~l~ 335 (660)
+|... |++++|..++++++++.
T Consensus 261 ~~~~~--g~~~~A~~~~~~al~~~ 282 (283)
T 3edt_B 261 LYRRQ--GKLEAAHTLEDCASRNR 282 (283)
T ss_dssp HHHHT--TCHHHHHHHHHHHHTTC
T ss_pred HHHHc--CCHHHHHHHHHHHHHhh
Confidence 99999 99999999999999763
No 75
>2ond_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 2.80A {Mus musculus} SCOP: a.118.8.7
Probab=99.78 E-value=6.8e-17 Score=166.01 Aligned_cols=183 Identities=10% Similarity=0.007 Sum_probs=171.5
Q ss_pred HHHHHHHHHHHHhCCCCHHHHHHHHHHHHH-------cCCH-------HHHHHHHHHHHH-HhccCCCchhchHHHHHHH
Q 006120 142 KEALVSFKRACELQPTDVRPHFRAGNCLYV-------LGRY-------REAKEEYLLALE-AAETGGNQWAYLLPQIYVN 206 (660)
Q Consensus 142 ~~A~~~~~~al~~~p~~~~~~~~la~~~~~-------~g~~-------~~A~~~~~~al~-~~p~~~~~~~~~~~~~~~~ 206 (660)
++|+..|++++..+|.++.+|+.+|..+.. .|++ ++|...|+++++ +.|+ ...+|..
T Consensus 33 ~~a~~~~~~al~~~p~~~~~w~~~~~~~~~~~~~l~~~g~~~~~~~~~~~A~~~~~rAl~~~~p~--------~~~~~~~ 104 (308)
T 2ond_A 33 KRVMFAYEQCLLVLGHHPDIWYEAAQYLEQSSKLLAEKGDMNNAKLFSDEAANIYERAISTLLKK--------NMLLYFA 104 (308)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHTSCCHHHHHHHHHHHHHHHHHHTTTTTT--------CHHHHHH
T ss_pred HHHHHHHHHHHHHcCCCHHHHHHHHHHHHHhchhhhhccchhhcccchHHHHHHHHHHHHHhCcc--------cHHHHHH
Confidence 789999999999999999999999999874 5886 999999999999 6887 7789999
Q ss_pred HHHHHHHCCCHHHHHHHHHHHHHhCCCcHH-HHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHh-CCC
Q 006120 207 LGIALEGEGMVLSACEYYRESAILCPTHFR-ALKLLGSALFGVGEYRAAVKALEEAIFIKPDYADAHCDLASALHA-MGE 284 (660)
Q Consensus 207 la~~~~~~g~~~~A~~~~~~al~~~p~~~~-~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~-~g~ 284 (660)
+|.++...|++++|...|++++++.|.++. +|..+|.++...|++++|+..|+++++..|....+|...+.+... .|+
T Consensus 105 ~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~~a~~~~~~~~~ 184 (308)
T 2ond_A 105 YADYEESRMKYEKVHSIYNRLLAIEDIDPTLVYIQYMKFARRAEGIKSGRMIFKKAREDARTRHHVYVTAALMEYYCSKD 184 (308)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHTSSSSCTHHHHHHHHHHHHHHHCHHHHHHHHHHHHTSTTCCTHHHHHHHHHHHHTSCC
T ss_pred HHHHHHhcCCHHHHHHHHHHHHhccccCccHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHcCC
Confidence 999999999999999999999999999987 999999999999999999999999999999998888877766543 799
Q ss_pred hHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHcc
Q 006120 285 DERAIEVFQKAIDLKPGHVDALYNLGGLYMDLGAGETEEAKKALKEALKM 334 (660)
Q Consensus 285 ~~~A~~~~~~al~~~p~~~~a~~~La~~~~~~~~g~~~eA~~~~~~al~l 334 (660)
+++|+..|+++++.+|+++.+|..++.++... |++++|+..|++++..
T Consensus 185 ~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~--g~~~~A~~~~~~al~~ 232 (308)
T 2ond_A 185 KSVAFKIFELGLKKYGDIPEYVLAYIDYLSHL--NEDNNTRVLFERVLTS 232 (308)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTT--CCHHHHHHHHHHHHHS
T ss_pred HHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHC--CCHHHHHHHHHHHHhc
Confidence 99999999999999999999999999999988 9999999999999996
No 76
>3urz_A Uncharacterized protein; tetratricopeptide repeats (TPR) containing protein, structur genomics, joint center for structural genomics, JCSG; HET: PG4; 2.19A {Bacteroides ovatus}
Probab=99.77 E-value=5.3e-18 Score=163.79 Aligned_cols=194 Identities=12% Similarity=-0.022 Sum_probs=154.6
Q ss_pred HHhHHHHHHHHHHHHHHHHHHHHHHHHHhhccCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHH
Q 006120 88 SEKRVFWEESTHDYAVFVKELGVLRNRADGARSREEAFDGHMAIGRVLYEHQLFKEALVSFKRACELQPTDVRPHFRAGN 167 (660)
Q Consensus 88 ~~~~~~l~~~~~~~g~~~~Al~~l~~a~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~ 167 (660)
....+..+..+...|++.+|+..+++++...|+.+ .+++..+. .... ...+.....+|.
T Consensus 4 ~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~---~~~~~~~~-----~~~~-------------~~~~~~~~~lg~ 62 (208)
T 3urz_A 4 VDEMLQKVSAAIEAGQNGQAVSYFRQTIALNIDRT---EMYYWTNV-----DKNS-------------EISSKLATELAL 62 (208)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCHHHH---HHHHHHHS-----CTTS-------------HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCh---HHHHHhhh-----cchh-------------hhhHHHHHHHHH
Confidence 45567788899999999999999999998766543 45544321 1100 012345677999
Q ss_pred HHHHcCCHHHHHHHHHHHHHHhccCCCchhchHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHH
Q 006120 168 CLYVLGRYREAKEEYLLALEAAETGGNQWAYLLPQIYVNLGIALEGEGMVLSACEYYRESAILCPTHFRALKLLGSALFG 247 (660)
Q Consensus 168 ~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~ 247 (660)
++...|++++|+..|+++++++|+ .+.++..+|.++...|++++|+..|+++++++|+++.++.++|.++..
T Consensus 63 ~~~~~g~~~~A~~~~~~al~~~p~--------~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~lg~~~~~ 134 (208)
T 3urz_A 63 AYKKNRNYDKAYLFYKELLQKAPN--------NVDCLEACAEMQVCRGQEKDALRMYEKILQLEADNLAANIFLGNYYYL 134 (208)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHCTT--------CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH
T ss_pred HHHHCCCHHHHHHHHHHHHHHCCC--------CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHH
Confidence 999999999999999999999999 789999999999999999999999999999999999999999999987
Q ss_pred CCC--HHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhCCChHHHHHHHHHHHHhCCCCHHHHHHHHHH
Q 006120 248 VGE--YRAAVKALEEAIFIKPDYADAHCDLASALHAMGEDERAIEVFQKAIDLKPGHVDALYNLGGL 312 (660)
Q Consensus 248 ~g~--~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~La~~ 312 (660)
.|+ ...+...+++++...| ...+++++|.++...|++++|+.+|+++++++|+. .+...+..+
T Consensus 135 ~~~~~~~~~~~~~~~~~~~~~-~~~a~~~~g~~~~~~~~~~~A~~~~~~al~l~P~~-~~~~~l~~i 199 (208)
T 3urz_A 135 TAEQEKKKLETDYKKLSSPTK-MQYARYRDGLSKLFTTRYEKARNSLQKVILRFPST-EAQKTLDKI 199 (208)
T ss_dssp HHHHHHHHHHHHHC---CCCH-HHHHHHHHHHHHHHHHTHHHHHHHHHHHTTTSCCH-HHHHHHHHH
T ss_pred HhHHHHHHHHHHHHHHhCCCc-hhHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCH-HHHHHHHHH
Confidence 764 4566777877764333 23478889999999999999999999999999973 344444443
No 77
>4ga2_A E3 SUMO-protein ligase ranbp2; TPR motif, nuclear pore complex component nucleocytoplasmic transport, transport protein; 0.95A {Pan troglodytes} PDB: 4ga0_A 4ga1_A*
Probab=99.77 E-value=7.4e-19 Score=160.46 Aligned_cols=147 Identities=20% Similarity=0.131 Sum_probs=111.4
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhccCCCchhchHHHHHHHHHH
Q 006120 130 AIGRVLYEHQLFKEALVSFKRACELQPTDVRPHFRAGNCLYVLGRYREAKEEYLLALEAAETGGNQWAYLLPQIYVNLGI 209 (660)
Q Consensus 130 ~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~la~ 209 (660)
.||.++..+|++++|+..+++++...|+.+..++.+|.+|...|++++|+..|+++++++|+ .+.++..+|.
T Consensus 2 ~LG~~~~~~~~~e~ai~~~~~a~~~~p~~~~~~~~la~~y~~~~~~~~A~~~~~~al~~~p~--------~~~a~~~lg~ 73 (150)
T 4ga2_A 2 PLGSMRRSKADVERYIASVQGSTPSPRQKSIKGFYFAKLYYEAKEYDLAKKYICTYINVQER--------DPKAHRFLGL 73 (150)
T ss_dssp -----CCCHHHHHHHHHHHHHHSCSHHHHHTTHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT--------CHHHHHHHHH
T ss_pred HhHHHHHHcChHHHHHHHHHHhcccCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC--------CHHHHHHHHH
Confidence 35677777777788888888877777777777777888888888888888888888888777 6777788888
Q ss_pred HHHHCCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHCCCHHHHHHH-HHHHHHhCCCCHHHHHHHHHHHHhCCC
Q 006120 210 ALEGEGMVLSACEYYRESAILCPTHFRALKLLGSALFGVGEYRAAVKA-LEEAIFIKPDYADAHCDLASALHAMGE 284 (660)
Q Consensus 210 ~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~-~~~al~~~p~~~~~~~~la~~~~~~g~ 284 (660)
++...|++++|+..|+++++++|+++.++.++|.++...|++++|... ++++++++|+++.++..++.++..+|+
T Consensus 74 ~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~aa~~~~~~al~l~P~~~~~~~l~~~ll~~~G~ 149 (150)
T 4ga2_A 74 LYELEENTDKAVECYRRSVELNPTQKDLVLKIAELLCKNDVTDGRAKYWVERAAKLFPGSPAVYKLKEQLLDCEGE 149 (150)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHCSSSSHHHHHHHHHHHHSTTCHHHHHHHHHHHHTCCC
T ss_pred HHHHcCchHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHHhCcCCHHHHHHHHHHHHHhCc
Confidence 888888888888888888888888888888888888888877766554 477888888888888777777777765
No 78
>2xm6_A Protein corresponding to locus C5321 from CFT073 strain; unknown function, SEL1-like repeats; 1.68A {Escherichia coli}
Probab=99.76 E-value=5e-16 Score=170.42 Aligned_cols=281 Identities=16% Similarity=0.088 Sum_probs=192.1
Q ss_pred hhhcCCcchhhccCchHHHHh----ccCchhhHHHHHHHHHHHHhhccCCcCCchHHhhhHHHHHHh----CCch-----
Q 006120 19 QKKQRTAAWAVSPNHGIVFDD----TWKIVDDLEILVKRLKAKQAKDGKLKGDNSDAFSDAGWSREL----GTSA----- 85 (660)
Q Consensus 19 ~~~~~p~~~~~~~~lg~~y~~----~~~~~~al~~~~~~~~~a~~~~~~l~~~~~~a~~~~~~~~~l----~~~~----- 85 (660)
.+...+++..+++.+|..|.. .+++.+++..+.++++. ....++..++..+.. ..+.
T Consensus 31 ~~~a~~g~~~a~~~lg~~y~~g~~~~~~~~~A~~~~~~a~~~----------~~~~a~~~Lg~~y~~g~g~~~~~~~A~~ 100 (490)
T 2xm6_A 31 KQKAESGEAKAQLELGYRYFQGNETTKDLTQAMDWFRRAAEQ----------GYTPAEYVLGLRYMNGEGVPQDYAQAVI 100 (490)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHT----------TCHHHHHHHHHHHHHTSSSCCCHHHHHH
T ss_pred HHHHHCCCHHHHHHHHHHHHcCCCCCcCHHHHHHHHHHHHHC----------CCHHHHHHHHHHHHcCCCCCCCHHHHHH
Confidence 344456777888899999998 78888888888888762 122222222222221 1111
Q ss_pred --------HHHHhHHHHHHHHHH----HHHHHHHHHHHHHHHhhccCcHHHHHHHHHHHHHHHH----cCCHHHHHHHHH
Q 006120 86 --------EISEKRVFWEESTHD----YAVFVKELGVLRNRADGARSREEAFDGHMAIGRVLYE----HQLFKEALVSFK 149 (660)
Q Consensus 86 --------~~~~~~~~l~~~~~~----~g~~~~Al~~l~~a~~~~~~~~~~~~~~~~lg~~~~~----~g~~~~A~~~~~ 149 (660)
....+...++.++.. .+++.+|+..++++.+.. ...+++.+|.+|.. .+++++|+.+|+
T Consensus 101 ~~~~a~~~~~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~a~~~~-----~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~ 175 (490)
T 2xm6_A 101 WYKKAALKGLPQAQQNLGVMYHEGNGVKVDKAESVKWFRLAAEQG-----RDSGQQSMGDAYFEGDGVTRDYVMAREWYS 175 (490)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT-----CHHHHHHHHHHHHHTSSSCCCHHHHHHHHH
T ss_pred HHHHHHHCCCHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCC-----CHHHHHHHHHHHHcCCCCCCCHHHHHHHHH
Confidence 122344555666665 567777777777776542 23667777777776 677788888887
Q ss_pred HHHHhCCCCHHHHHHHHHHHHH----cCCHHHHHHHHHHHHHHhccCCCchhchHHHHHHHHHHHHHH----CCCHHHHH
Q 006120 150 RACELQPTDVRPHFRAGNCLYV----LGRYREAKEEYLLALEAAETGGNQWAYLLPQIYVNLGIALEG----EGMVLSAC 221 (660)
Q Consensus 150 ~al~~~p~~~~~~~~la~~~~~----~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~la~~~~~----~g~~~~A~ 221 (660)
++++. +++.+++.+|.+|.. .+++++|+.+|+++++.. .+.+++.+|.++.. .+++++|+
T Consensus 176 ~a~~~--~~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~a~~~~----------~~~a~~~lg~~y~~g~g~~~~~~~A~ 243 (490)
T 2xm6_A 176 KAAEQ--GNVWSCNQLGYMYSRGLGVERNDAISAQWYRKSATSG----------DELGQLHLADMYYFGIGVTQDYTQSR 243 (490)
T ss_dssp HHHHT--TCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT----------CHHHHHHHHHHHHHTSSSCCCHHHHH
T ss_pred HHHHC--CCHHHHHHHHHHHhcCCCCCcCHHHHHHHHHHHHHCC----------CHHHHHHHHHHHHcCCCCCCCHHHHH
Confidence 77765 467777777877777 777788888887777643 34567777777776 67777777
Q ss_pred HHHHHHHHhCCCcHHHHHHHHHHHHH----CCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhC-----CChHHHHHHH
Q 006120 222 EYYRESAILCPTHFRALKLLGSALFG----VGEYRAAVKALEEAIFIKPDYADAHCDLASALHAM-----GEDERAIEVF 292 (660)
Q Consensus 222 ~~~~~al~~~p~~~~~~~~lg~~~~~----~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~-----g~~~~A~~~~ 292 (660)
.+|+++++. .++.++..+|.++.. .+++++|+.+|+++.+. .++.+++.+|.+|... +++++|+.+|
T Consensus 244 ~~~~~a~~~--~~~~a~~~lg~~y~~g~~~~~d~~~A~~~~~~a~~~--~~~~a~~~Lg~~y~~~~~g~~~~~~~A~~~~ 319 (490)
T 2xm6_A 244 VLFSQSAEQ--GNSIAQFRLGYILEQGLAGAKEPLKALEWYRKSAEQ--GNSDGQYYLAHLYDKGAEGVAKNREQAISWY 319 (490)
T ss_dssp HHHHHHHTT--TCHHHHHHHHHHHHHTTTSSCCHHHHHHHHHHHHTT--TCHHHHHHHHHHHHHCBTTBCCCHHHHHHHH
T ss_pred HHHHHHHHC--CCHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHc--CCHHHHHHHHHHHHcCCCCCcCCHHHHHHHH
Confidence 777777654 456677777777777 77777777777777654 4567777777777776 7777777777
Q ss_pred HHHHHhCCCCHHHHHHHHHHHHHhcCC---CHHHHHHHHHHHHcc
Q 006120 293 QKAIDLKPGHVDALYNLGGLYMDLGAG---ETEEAKKALKEALKM 334 (660)
Q Consensus 293 ~~al~~~p~~~~a~~~La~~~~~~~~g---~~~eA~~~~~~al~l 334 (660)
+++++. .++.+++++|.+|... | ++++|+.+|+++++.
T Consensus 320 ~~a~~~--~~~~a~~~lg~~y~~~--g~~~~~~~A~~~~~~a~~~ 360 (490)
T 2xm6_A 320 TKSAEQ--GDATAQANLGAIYFRL--GSEEEHKKAVEWFRKAAAK 360 (490)
T ss_dssp HHHHHT--TCHHHHHHHHHHHHHS--CCHHHHHHHHHHHHHHHHT
T ss_pred HHHHhc--CCHHHHHHHHHHHHhC--CCcccHHHHHHHHHHHHHC
Confidence 777765 3567777777777764 4 677777777777766
No 79
>1hz4_A MALT regulatory protein; two-helix bundles, helix repeats, protein superhelix, transc activator; 1.45A {Escherichia coli} SCOP: a.118.8.2
Probab=99.76 E-value=1.4e-16 Score=168.02 Aligned_cols=282 Identities=17% Similarity=0.064 Sum_probs=226.9
Q ss_pred hhccCchHHHHhccCchhhHHHHHHHHHHHHhhccCCcCCchHHhhhHHHHHHhCCchHHHHhHHHHHHHHHHHHHHHHH
Q 006120 28 AVSPNHGIVFDDTWKIVDDLEILVKRLKAKQAKDGKLKGDNSDAFSDAGWSRELGTSAEISEKRVFWEESTHDYAVFVKE 107 (660)
Q Consensus 28 ~~~~~lg~~y~~~~~~~~al~~~~~~~~~a~~~~~~l~~~~~~a~~~~~~~~~l~~~~~~~~~~~~l~~~~~~~g~~~~A 107 (660)
.++..+|.++...|++.+++..+.+++.. .+... ..........++.++...|++.+|
T Consensus 15 ~~~~~~a~~~~~~g~~~~A~~~~~~al~~--------~~~~~--------------~~~~~~~~~~l~~~~~~~g~~~~A 72 (373)
T 1hz4_A 15 EFNALRAQVAINDGNPDEAERLAKLALEE--------LPPGW--------------FYSRIVATSVLGEVLHCKGELTRS 72 (373)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHT--------CCTTC--------------HHHHHHHHHHHHHHHHHHTCHHHH
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHHc--------CCCCc--------------hhHHHHHHHHHHHHHHhcCcHHHH
Confidence 45567889999999999999999888873 11110 011223455668888999999999
Q ss_pred HHHHHHHHhhccC---cHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC--------CCCHHHHHHHHHHHHHcCCHH
Q 006120 108 LGVLRNRADGARS---REEAFDGHMAIGRVLYEHQLFKEALVSFKRACELQ--------PTDVRPHFRAGNCLYVLGRYR 176 (660)
Q Consensus 108 l~~l~~a~~~~~~---~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~--------p~~~~~~~~la~~~~~~g~~~ 176 (660)
+..+++++...+. ......++..+|.++...|++++|+..++++++.. |....++..+|.++...|+++
T Consensus 73 ~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~ 152 (373)
T 1hz4_A 73 LALMQQTEQMARQHDVWHYALWSLIQQSEILFAQGFLQTAWETQEKAFQLINEQHLEQLPMHEFLVRIRAQLLWAWARLD 152 (373)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCTTSTHHHHHHHHHHHHHHHTTCHH
T ss_pred HHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHhccccCcHHHHHHHHHHHHHHHhcCHH
Confidence 9999999886552 33345668899999999999999999999999875 334567888999999999999
Q ss_pred HHHHHHHHHHHHhccCCCchhchHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCC--c-HHHH----HHHHHHHHHCC
Q 006120 177 EAKEEYLLALEAAETGGNQWAYLLPQIYVNLGIALEGEGMVLSACEYYRESAILCPT--H-FRAL----KLLGSALFGVG 249 (660)
Q Consensus 177 ~A~~~~~~al~~~p~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~--~-~~~~----~~lg~~~~~~g 249 (660)
+|..++++++.+.+...... ...++..+|.++...|++++|..++++++.+.+. . .... ..++.++...|
T Consensus 153 ~A~~~~~~al~~~~~~~~~~---~~~~~~~la~~~~~~g~~~~A~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~g 229 (373)
T 1hz4_A 153 EAEASARSGIEVLSSYQPQQ---QLQCLAMLIQCSLARGDLDNARSQLNRLENLLGNGKYHSDWISNANKVRVIYWQMTG 229 (373)
T ss_dssp HHHHHHHHHHHHTTTSCGGG---GHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSCCCHHHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHhhccCcHH---HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhccCcchhHHHHHHHHHHHHHHHCC
Confidence 99999999999988765433 4578899999999999999999999999987332 2 1111 13456688999
Q ss_pred CHHHHHHHHHHHHHhCCCC----HHHHHHHHHHHHhCCChHHHHHHHHHHHHhCCC------CHHHHHHHHHHHHHhcCC
Q 006120 250 EYRAAVKALEEAIFIKPDY----ADAHCDLASALHAMGEDERAIEVFQKAIDLKPG------HVDALYNLGGLYMDLGAG 319 (660)
Q Consensus 250 ~~~~A~~~~~~al~~~p~~----~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~------~~~a~~~La~~~~~~~~g 319 (660)
++++|...+++++...+.. ...+..+|.++...|++++|+..+++++...+. ...++..++.++... |
T Consensus 230 ~~~~A~~~~~~a~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~l~~a~~~~~~~~~~~~~~~~~~~la~~~~~~--g 307 (373)
T 1hz4_A 230 DKAAAANWLRHTAKPEFANNHFLQGQWRNIARAQILLGEFEPAEIVLEELNENARSLRLMSDLNRNLLLLNQLYWQA--G 307 (373)
T ss_dssp CHHHHHHHHHHSCCCCCTTCGGGHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHH--T
T ss_pred CHHHHHHHHHhCCCCCCCcchhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCcchhhHHHHHHHHHHHHHHh--C
Confidence 9999999999999877653 346788999999999999999999999887432 235788899999999 9
Q ss_pred CHHHHHHHHHHHHcccC
Q 006120 320 ETEEAKKALKEALKMTN 336 (660)
Q Consensus 320 ~~~eA~~~~~~al~l~p 336 (660)
++++|...+++++.+.+
T Consensus 308 ~~~~A~~~l~~al~~~~ 324 (373)
T 1hz4_A 308 RKSDAQRVLLDALKLAN 324 (373)
T ss_dssp CHHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHhc
Confidence 99999999999998864
No 80
>2pzi_A Probable serine/threonine-protein kinase PKNG; ATP-recognition, kinase-INH complex, rubredoxin fold, TPR domain, transferase; HET: AXX; 2.40A {Mycobacterium tuberculosis}
Probab=99.76 E-value=5.8e-18 Score=193.28 Aligned_cols=175 Identities=16% Similarity=0.057 Sum_probs=161.6
Q ss_pred HHHHHHHHHHHHHHHHH--------hhccCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHH
Q 006120 99 HDYAVFVKELGVLRNRA--------DGARSREEAFDGHMAIGRVLYEHQLFKEALVSFKRACELQPTDVRPHFRAGNCLY 170 (660)
Q Consensus 99 ~~~g~~~~Al~~l~~a~--------~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~ 170 (660)
...+++++|+..+++++ +..++. ..+++.+|.++...|++++|+..|+++++.+|++..+++.+|.++.
T Consensus 402 ~~~~~~~~A~~~~~~al~~~~~~~~~~~p~~---~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~ 478 (681)
T 2pzi_A 402 TVLSQPVQTLDSLRAARHGALDADGVDFSES---VELPLMEVRALLDLGDVAKATRKLDDLAERVGWRWRLVWYRAVAEL 478 (681)
T ss_dssp TTTCCHHHHHHHHHHHHTC-------CCTTC---SHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHCCCHHHHHHHHHHHH
T ss_pred ccccCHHHHHHHHHHhhhhcccccccccccc---hhHHHHHHHHHHhcCCHHHHHHHHHHHhccCcchHHHHHHHHHHHH
Confidence 66788999999999998 544444 4889999999999999999999999999999999999999999999
Q ss_pred HcCCHHHHHHHHHHHHHHhccCCCchhchHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHCCC
Q 006120 171 VLGRYREAKEEYLLALEAAETGGNQWAYLLPQIYVNLGIALEGEGMVLSACEYYRESAILCPTHFRALKLLGSALFGVGE 250 (660)
Q Consensus 171 ~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~ 250 (660)
.+|++++|+..|+++++++|+ .+.++.++|.++..+|++++ +..|+++++++|++..+++++|.++..+|+
T Consensus 479 ~~g~~~~A~~~~~~al~l~P~--------~~~~~~~lg~~~~~~g~~~~-~~~~~~al~~~P~~~~a~~~lg~~~~~~g~ 549 (681)
T 2pzi_A 479 LTGDYDSATKHFTEVLDTFPG--------ELAPKLALAATAELAGNTDE-HKFYQTVWSTNDGVISAAFGLARARSAEGD 549 (681)
T ss_dssp HHTCHHHHHHHHHHHHHHSTT--------CSHHHHHHHHHHHHHTCCCT-TCHHHHHHHHCTTCHHHHHHHHHHHHHTTC
T ss_pred HcCCHHHHHHHHHHHHHhCCC--------ChHHHHHHHHHHHHcCChHH-HHHHHHHHHhCCchHHHHHHHHHHHHHcCC
Confidence 999999999999999999999 67899999999999999999 999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhCCCh
Q 006120 251 YRAAVKALEEAIFIKPDYADAHCDLASALHAMGED 285 (660)
Q Consensus 251 ~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~ 285 (660)
+++|+..|+++++++|++..++.++|.++...++.
T Consensus 550 ~~~A~~~~~~al~l~P~~~~a~~~~~~~~~~~~~~ 584 (681)
T 2pzi_A 550 RVGAVRTLDEVPPTSRHFTTARLTSAVTLLSGRST 584 (681)
T ss_dssp HHHHHHHHHTSCTTSTTHHHHHHHHHHHTC-----
T ss_pred HHHHHHHHHhhcccCcccHHHHHHHHHHHHccCCC
Confidence 99999999999999999999999999999887763
No 81
>1hz4_A MALT regulatory protein; two-helix bundles, helix repeats, protein superhelix, transc activator; 1.45A {Escherichia coli} SCOP: a.118.8.2
Probab=99.76 E-value=3.2e-16 Score=165.13 Aligned_cols=248 Identities=12% Similarity=0.045 Sum_probs=203.9
Q ss_pred HHhHHHHHHHHHHHHHHHHHHHHHHHHHhhccCcH--HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC------H
Q 006120 88 SEKRVFWEESTHDYAVFVKELGVLRNRADGARSRE--EAFDGHMAIGRVLYEHQLFKEALVSFKRACELQPTD------V 159 (660)
Q Consensus 88 ~~~~~~l~~~~~~~g~~~~Al~~l~~a~~~~~~~~--~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~------~ 159 (660)
.......+.++...|++.+|+..+++++...+..+ ....++..+|.++...|++++|+..++++++..|.. .
T Consensus 14 ~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~ 93 (373)
T 1hz4_A 14 AEFNALRAQVAINDGNPDEAERLAKLALEELPPGWFYSRIVATSVLGEVLHCKGELTRSLALMQQTEQMARQHDVWHYAL 93 (373)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHTCCTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHH
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCchhHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHhcCcHHHHH
Confidence 34556668888899999999999999998876443 244578899999999999999999999999876532 2
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHhccCCCchhchHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCC-----c
Q 006120 160 RPHFRAGNCLYVLGRYREAKEEYLLALEAAETGGNQWAYLLPQIYVNLGIALEGEGMVLSACEYYRESAILCPT-----H 234 (660)
Q Consensus 160 ~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~-----~ 234 (660)
.++..+|.++...|++++|+..+++++++.+............++.++|.++...|++++|..++++++...+. .
T Consensus 94 ~~~~~la~~~~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~ 173 (373)
T 1hz4_A 94 WSLIQQSEILFAQGFLQTAWETQEKAFQLINEQHLEQLPMHEFLVRIRAQLLWAWARLDEAEASARSGIEVLSSYQPQQQ 173 (373)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCTTSTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTSCGGGG
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHhccccCcHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHhhccCcHHH
Confidence 45788999999999999999999999999876544311126778899999999999999999999999998765 3
Q ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCC--C-HHHHH----HHHHHHHhCCChHHHHHHHHHHHHhCCCC----H
Q 006120 235 FRALKLLGSALFGVGEYRAAVKALEEAIFIKPD--Y-ADAHC----DLASALHAMGEDERAIEVFQKAIDLKPGH----V 303 (660)
Q Consensus 235 ~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~--~-~~~~~----~la~~~~~~g~~~~A~~~~~~al~~~p~~----~ 303 (660)
..++..+|.++...|++++|...+++++.+.+. . ..... .++.++...|++++|...+++++...|.. .
T Consensus 174 ~~~~~~la~~~~~~g~~~~A~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~ 253 (373)
T 1hz4_A 174 LQCLAMLIQCSLARGDLDNARSQLNRLENLLGNGKYHSDWISNANKVRVIYWQMTGDKAAAANWLRHTAKPEFANNHFLQ 253 (373)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHSCCCCCTTCGGGH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhccCcchhHHHHHHHHHHHHHHHCCCHHHHHHHHHhCCCCCCCcchhhH
Confidence 567889999999999999999999999987432 2 12111 34566889999999999999998877653 3
Q ss_pred HHHHHHHHHHHHhcCCCHHHHHHHHHHHHcccCC
Q 006120 304 DALYNLGGLYMDLGAGETEEAKKALKEALKMTNR 337 (660)
Q Consensus 304 ~a~~~La~~~~~~~~g~~~eA~~~~~~al~l~p~ 337 (660)
..+..++.++... |++++|...+++++...+.
T Consensus 254 ~~~~~la~~~~~~--g~~~~A~~~l~~a~~~~~~ 285 (373)
T 1hz4_A 254 GQWRNIARAQILL--GEFEPAEIVLEELNENARS 285 (373)
T ss_dssp HHHHHHHHHHHHT--TCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHc--CCHHHHHHHHHHHHHHHHh
Confidence 4678899999998 9999999999999987643
No 82
>3dra_A Protein farnesyltransferase/geranylgeranyltransferase type-1 subunit alpha; geranylgeranyltrasferase, ggtase, ggtase-I, PGGT, prenyltransferase, farnesyltransferase; HET: B3P GRG; 1.80A {Candida albicans}
Probab=99.76 E-value=1.2e-16 Score=162.60 Aligned_cols=226 Identities=8% Similarity=-0.068 Sum_probs=207.6
Q ss_pred HHHHHHHHHHHHHHHHHhhccCcHHHHHHHHHHHHHHHHcC--CHHHHHHHHHHHHHhCCCCHHHHHHHHHHH----HHc
Q 006120 99 HDYAVFVKELGVLRNRADGARSREEAFDGHMAIGRVLYEHQ--LFKEALVSFKRACELQPTDVRPHFRAGNCL----YVL 172 (660)
Q Consensus 99 ~~~g~~~~Al~~l~~a~~~~~~~~~~~~~~~~lg~~~~~~g--~~~~A~~~~~~al~~~p~~~~~~~~la~~~----~~~ 172 (660)
......++|+....+++...|... .+|+..+.++...+ ++++++.++.+++..+|.+..+|+..+.++ ...
T Consensus 44 ~~~e~s~~aL~~t~~~L~~nP~~~---taWn~R~~~L~~l~~~~~~eeL~~~~~~L~~nPk~y~aW~~R~~iL~~~~~~l 120 (306)
T 3dra_A 44 KAEEYSERALHITELGINELASHY---TIWIYRFNILKNLPNRNLYDELDWCEEIALDNEKNYQIWNYRQLIIGQIMELN 120 (306)
T ss_dssp HTTCCSHHHHHHHHHHHHHCTTCH---HHHHHHHHHHHTCTTSCHHHHHHHHHHHHHHCTTCCHHHHHHHHHHHHHHHHT
T ss_pred HcCCCCHHHHHHHHHHHHHCcHHH---HHHHHHHHHHHHcccccHHHHHHHHHHHHHHCcccHHHHHHHHHHHHHHHHhc
Confidence 333344689999999999888774 89999999999999 999999999999999999999999999999 777
Q ss_pred ---CCHHHHHHHHHHHHHHhccCCCchhchHHHHHHHHHHHHHHCCCHH--HHHHHHHHHHHhCCCcHHHHHHHHHHHHH
Q 006120 173 ---GRYREAKEEYLLALEAAETGGNQWAYLLPQIYVNLGIALEGEGMVL--SACEYYRESAILCPTHFRALKLLGSALFG 247 (660)
Q Consensus 173 ---g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~la~~~~~~g~~~--~A~~~~~~al~~~p~~~~~~~~lg~~~~~ 247 (660)
+++++++..+.++++.+|. ...+|...+.++...|.++ ++++++.++++.+|.+..+|...+.++..
T Consensus 121 ~~~~~~~~EL~~~~~~l~~~pk--------ny~aW~~R~~vl~~l~~~~~~~EL~~~~~~i~~d~~N~sAW~~R~~ll~~ 192 (306)
T 3dra_A 121 NNDFDPYREFDILEAMLSSDPK--------NHHVWSYRKWLVDTFDLHNDAKELSFVDKVIDTDLKNNSAWSHRFFLLFS 192 (306)
T ss_dssp TTCCCTHHHHHHHHHHHHHCTT--------CHHHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHS
T ss_pred cccCCHHHHHHHHHHHHHhCCC--------CHHHHHHHHHHHHHhcccChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHh
Confidence 8999999999999999999 7899999999999999999 99999999999999999999999999999
Q ss_pred CCC------HHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhCCChHH-HHHHHHHHHHhC---CCCHHHHHHHHHHHHHhc
Q 006120 248 VGE------YRAAVKALEEAIFIKPDYADAHCDLASALHAMGEDER-AIEVFQKAIDLK---PGHVDALYNLGGLYMDLG 317 (660)
Q Consensus 248 ~g~------~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~-A~~~~~~al~~~---p~~~~a~~~La~~~~~~~ 317 (660)
.++ ++++++++.+++..+|++..+|+.++.++...|+..+ ...++++++.++ |.++.++..++.++.+.
T Consensus 193 l~~~~~~~~~~eEl~~~~~aI~~~p~n~SaW~y~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~s~~al~~la~~~~~~- 271 (306)
T 3dra_A 193 KKHLATDNTIDEELNYVKDKIVKCPQNPSTWNYLLGIHERFDRSITQLEEFSLQFVDLEKDQVTSSFALETLAKIYTQQ- 271 (306)
T ss_dssp SGGGCCHHHHHHHHHHHHHHHHHCSSCHHHHHHHHHHHHHTTCCGGGGHHHHHTTEEGGGTEESCHHHHHHHHHHHHHT-
T ss_pred ccccchhhhHHHHHHHHHHHHHhCCCCccHHHHHHHHHHhcCCChHHHHHHHHHHHhccCCCCCCHHHHHHHHHHHHcc-
Confidence 988 9999999999999999999999999999999998655 456777777776 88999999999999988
Q ss_pred CCCHHHHHHHHHHHHc-ccCC
Q 006120 318 AGETEEAKKALKEALK-MTNR 337 (660)
Q Consensus 318 ~g~~~eA~~~~~~al~-l~p~ 337 (660)
|+.++|+++|+++.+ ++|-
T Consensus 272 -~~~~~A~~~~~~l~~~~Dpi 291 (306)
T 3dra_A 272 -KKYNESRTVYDLLKSKYNPI 291 (306)
T ss_dssp -TCHHHHHHHHHHHHHTTCGG
T ss_pred -CCHHHHHHHHHHHHhccChH
Confidence 999999999999996 7876
No 83
>2ooe_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 3.00A {Mus musculus} SCOP: a.118.8.7
Probab=99.75 E-value=1.1e-15 Score=169.35 Aligned_cols=186 Identities=10% Similarity=0.010 Sum_probs=171.2
Q ss_pred HHHHHHHHHHHHhCCCCHHHHHHHHHHHHH-------cCCHH-------HHHHHHHHHHH-HhccCCCchhchHHHHHHH
Q 006120 142 KEALVSFKRACELQPTDVRPHFRAGNCLYV-------LGRYR-------EAKEEYLLALE-AAETGGNQWAYLLPQIYVN 206 (660)
Q Consensus 142 ~~A~~~~~~al~~~p~~~~~~~~la~~~~~-------~g~~~-------~A~~~~~~al~-~~p~~~~~~~~~~~~~~~~ 206 (660)
.+++..|++++...|.++.+|..+|..+.. .|+++ +|...|+++++ +.|+ ...++..
T Consensus 255 ~~a~~~y~~al~~~p~~~~~w~~~~~~~~~~~~~~~~~g~~~~a~~~~~~A~~~~~~Al~~~~p~--------~~~l~~~ 326 (530)
T 2ooe_A 255 KRVMFAYEQCLLVLGHHPDIWYEAAQYLEQSSKLLAEKGDMNNAKLFSDEAANIYERAISTLLKK--------NMLLYFA 326 (530)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHTTTCCHHHHHHHHHHHHHHHHHTTTTCSS--------CHHHHHH
T ss_pred HHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhchhhhhccchhhhhhhhHHHHHHHHHHHHHhCcc--------cHHHHHH
Confidence 367889999999999999999999999987 79987 99999999997 7887 7889999
Q ss_pred HHHHHHHCCCHHHHHHHHHHHHHhCCCcH-HHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHH-HHhCCC
Q 006120 207 LGIALEGEGMVLSACEYYRESAILCPTHF-RALKLLGSALFGVGEYRAAVKALEEAIFIKPDYADAHCDLASA-LHAMGE 284 (660)
Q Consensus 207 la~~~~~~g~~~~A~~~~~~al~~~p~~~-~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~-~~~~g~ 284 (660)
+|.++...|++++|...|+++++..|.++ .+|..++.++.+.|++++|...|+++++..|.....+...+.+ +...|+
T Consensus 327 ~~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~A~~~~~~Al~~~~~~~~~~~~~a~~~~~~~~~ 406 (530)
T 2ooe_A 327 YADYEESRMKYEKVHSIYNRLLAIEDIDPTLVYIQYMKFARRAEGIKSGRMIFKKAREDARTRHHVYVTAALMEYYCSKD 406 (530)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHSSSSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCTTCCTHHHHHHHHHHHHHTCC
T ss_pred HHHHHHhcCCHHHHHHHHHHHhCccccCchHHHHHHHHHHHHhcCHHHHHHHHHHHHhccCCchHHHHHHHHHHHHHcCC
Confidence 99999999999999999999999999985 6999999999999999999999999999998887777776655 446999
Q ss_pred hHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHcccCC
Q 006120 285 DERAIEVFQKAIDLKPGHVDALYNLGGLYMDLGAGETEEAKKALKEALKMTNR 337 (660)
Q Consensus 285 ~~~A~~~~~~al~~~p~~~~a~~~La~~~~~~~~g~~~eA~~~~~~al~l~p~ 337 (660)
+++|...|+++++..|+++.+|..++.++... |+.++|...|++++...|.
T Consensus 407 ~~~A~~~~e~al~~~p~~~~~~~~~~~~~~~~--g~~~~Ar~~~~~al~~~~~ 457 (530)
T 2ooe_A 407 KSVAFKIFELGLKKYGDIPEYVLAYIDYLSHL--NEDNNTRVLFERVLTSGSL 457 (530)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHTTT--TCHHHHHHHHHHHHHSCCS
T ss_pred hhHHHHHHHHHHHHCCCCHHHHHHHHHHHHhC--CCHhhHHHHHHHHHhccCC
Confidence 99999999999999999999999999999988 9999999999999998653
No 84
>2yhc_A BAMD, UPF0169 lipoprotein YFIO; essential BAM component, membrane protein; 1.80A {Escherichia coli} PDB: 3tgo_A 3q5m_A
Probab=99.74 E-value=1.9e-16 Score=154.75 Aligned_cols=190 Identities=12% Similarity=0.039 Sum_probs=141.9
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC---HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhccCCCchhchHH
Q 006120 125 FDGHMAIGRVLYEHQLFKEALVSFKRACELQPTD---VRPHFRAGNCLYVLGRYREAKEEYLLALEAAETGGNQWAYLLP 201 (660)
Q Consensus 125 ~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~---~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~ 201 (660)
...++.+|..++..|++++|+..|+++++..|.+ ..+++.+|.++...|++++|+..|+++++..|+... .+
T Consensus 4 ~~~~~~~a~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~a~~~lg~~~~~~~~~~~A~~~~~~~l~~~P~~~~-----~~ 78 (225)
T 2yhc_A 4 PNEIYATAQQKLQDGNWRQAITQLEALDNRYPFGPYSQQVQLDLIYAYYKNADLPLAQAAIDRFIRLNPTHPN-----ID 78 (225)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTT-----HH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHCcCCCc-----HH
Confidence 3678888999999999999999999999988875 468889999999999999999999999999887543 44
Q ss_pred HHHHHHHHHHHH------------------CCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Q 006120 202 QIYVNLGIALEG------------------EGMVLSACEYYRESAILCPTHFRALKLLGSALFGVGEYRAAVKALEEAIF 263 (660)
Q Consensus 202 ~~~~~la~~~~~------------------~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~ 263 (660)
.+++.+|.++.. .|++++|+..|+++++..|++..++..+..+....
T Consensus 79 ~a~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~P~~~~a~~a~~~l~~~~--------------- 143 (225)
T 2yhc_A 79 YVMYMRGLTNMALDDSALQGFFGVDRSDRDPQQARAAFSDFSKLVRGYPNSQYTTDATKRLVFLK--------------- 143 (225)
T ss_dssp HHHHHHHHHHHHHHC--------------CCHHHHHHHHHHHHHHTTCTTCTTHHHHHHHHHHHH---------------
T ss_pred HHHHHHHHHHHhhhhhhhhhhhccchhhcCcHHHHHHHHHHHHHHHHCcCChhHHHHHHHHHHHH---------------
Confidence 677888888765 34555555555555555555443322111100000
Q ss_pred hCCCCHHHHHHHHHHHHhCCChHHHHHHHHHHHHhCCCCH---HHHHHHHHHHHHhcCCCHHHHHHHHHHHHcccCCh
Q 006120 264 IKPDYADAHCDLASALHAMGEDERAIEVFQKAIDLKPGHV---DALYNLGGLYMDLGAGETEEAKKALKEALKMTNRV 338 (660)
Q Consensus 264 ~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~---~a~~~La~~~~~~~~g~~~eA~~~~~~al~l~p~~ 338 (660)
.........+|.+|...|++++|+..|+++++..|+++ .++..+|.++..+ |++++|+..++++....|+.
T Consensus 144 --~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~a~~~l~~~~~~~--g~~~~A~~~~~~l~~~~~~~ 217 (225)
T 2yhc_A 144 --DRLAKYEYSVAEYYTERGAWVAVVNRVEGMLRDYPDTQATRDALPLMENAYRQM--QMNAQAEKVAKIIAANSSNT 217 (225)
T ss_dssp --HHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSTTSHHHHHHHHHHHHHHHHT--TCHHHHHHHHHHHHHCCSCC
T ss_pred --HHHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHHCcCCCccHHHHHHHHHHHHHc--CCcHHHHHHHHHHHhhCCCc
Confidence 00012236788999999999999999999999999875 6799999999998 99999999999888887763
No 85
>3q15_A PSP28, response regulator aspartate phosphatase H; tetratricopeptide repeat, 3-helix bundle, phosphorelay signa transduction, phosphatase; 2.19A {Bacillus subtilis}
Probab=99.74 E-value=9.3e-17 Score=169.94 Aligned_cols=246 Identities=13% Similarity=0.055 Sum_probs=203.5
Q ss_pred hccCchHHHHhccCchhhHHHHHHHHHHHHhhccCCcCCchHHhhhHHHHHHhCCchHHHHhHHHHHHHHHHHHHHHHHH
Q 006120 29 VSPNHGIVFDDTWKIVDDLEILVKRLKAKQAKDGKLKGDNSDAFSDAGWSRELGTSAEISEKRVFWEESTHDYAVFVKEL 108 (660)
Q Consensus 29 ~~~~lg~~y~~~~~~~~al~~~~~~~~~a~~~~~~l~~~~~~a~~~~~~~~~l~~~~~~~~~~~~l~~~~~~~g~~~~Al 108 (660)
.++..|..+...|++.+|++.+.++++. . ......+.....+..+|.++...|++.+|+
T Consensus 103 ~~~~~g~~~~~~g~~~~A~~~~~~al~~--------~-------------~~~~~~~~~a~~~~~lg~~y~~~~~~~~A~ 161 (378)
T 3q15_A 103 SLFFRGMYEFDQKEYVEAIGYYREAEKE--------L-------------PFVSDDIEKAEFHFKVAEAYYHMKQTHVSM 161 (378)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHTT--------G-------------GGCCCHHHHHHHHHHHHHHHHHTTCHHHHH
T ss_pred HHHHHHHHHHHHCCHHHHHHHHHHHHHH--------H-------------hhCCChHHHHHHHHHHHHHHHHcCCcHHHH
Confidence 5677899999999999999999998882 1 111233455667788899999999999999
Q ss_pred HHHHHHHhhccC----cHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC------CHHHHHHHHHHHHHcCCHHHH
Q 006120 109 GVLRNRADGARS----REEAFDGHMAIGRVLYEHQLFKEALVSFKRACELQPT------DVRPHFRAGNCLYVLGRYREA 178 (660)
Q Consensus 109 ~~l~~a~~~~~~----~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~------~~~~~~~la~~~~~~g~~~~A 178 (660)
..+.++++..+. .+..+.++..+|.++...|++++|+.+|++++++.+. ...++.++|.++..+|++++|
T Consensus 162 ~~~~~al~~~~~~~~~~~~~~~~~~~lg~~y~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~~~~~~A 241 (378)
T 3q15_A 162 YHILQALDIYQNHPLYSIRTIQSLFVIAGNYDDFKHYDKALPHLEAALELAMDIQNDRFIAISLLNIANSYDRSGDDQMA 241 (378)
T ss_dssp HHHHHHHHHHHTSTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHH
T ss_pred HHHHHHHHHHHhCCCchhhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHCCCHHHH
Confidence 999999987764 3356788999999999999999999999999987431 346889999999999999999
Q ss_pred HHHHHHHHHHhccCCCchhchHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-----CCcHHHHHHHHHHHHHCCC---
Q 006120 179 KEEYLLALEAAETGGNQWAYLLPQIYVNLGIALEGEGMVLSACEYYRESAILC-----PTHFRALKLLGSALFGVGE--- 250 (660)
Q Consensus 179 ~~~~~~al~~~p~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~-----p~~~~~~~~lg~~~~~~g~--- 250 (660)
+.++++++++.+...... .+.++.++|.++..+|++++|+.++++++++. |.....+..++.++...++
T Consensus 242 ~~~~~~al~~~~~~~~~~---~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~l~~ly~~~~~~~~ 318 (378)
T 3q15_A 242 VEHFQKAAKVSREKVPDL---LPKVLFGLSWTLCKAGQTQKAFQFIEEGLDHITARSHKFYKELFLFLQAVYKETVDERK 318 (378)
T ss_dssp HHHHHHHHHHHHHHCGGG---HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCTTCCSCHHHHHHHHHHHHSSSCCHHH
T ss_pred HHHHHHHHHHHHhhCChh---HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhCCCcHHH
Confidence 999999999544332222 68899999999999999999999999999984 3445567888889989999
Q ss_pred HHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhCCChHHHHHHHHHHHHhC
Q 006120 251 YRAAVKALEEAIFIKPDYADAHCDLASALHAMGEDERAIEVFQKAIDLK 299 (660)
Q Consensus 251 ~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~ 299 (660)
+.+|+.++++. ...|....++..+|.+|...|++++|+.+|+++++..
T Consensus 319 ~~~al~~~~~~-~~~~~~~~~~~~la~~y~~~g~~~~A~~~~~~al~~~ 366 (378)
T 3q15_A 319 IHDLLSYFEKK-NLHAYIEACARSAAAVFESSCHFEQAAAFYRKVLKAQ 366 (378)
T ss_dssp HHHHHHHHHHT-TCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhC-CChhHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHH
Confidence 88888888762 2234446778899999999999999999999998764
No 86
>2yhc_A BAMD, UPF0169 lipoprotein YFIO; essential BAM component, membrane protein; 1.80A {Escherichia coli} PDB: 3tgo_A 3q5m_A
Probab=99.73 E-value=2.3e-16 Score=154.16 Aligned_cols=159 Identities=13% Similarity=0.069 Sum_probs=113.9
Q ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhccCCCchhchHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCcH--
Q 006120 158 DVRPHFRAGNCLYVLGRYREAKEEYLLALEAAETGGNQWAYLLPQIYVNLGIALEGEGMVLSACEYYRESAILCPTHF-- 235 (660)
Q Consensus 158 ~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~-- 235 (660)
.+..++.+|..+...|++++|+..|+++++..|.... ...+++.+|.++...|++++|+..|+++++..|++.
T Consensus 3 ~~~~~~~~a~~~~~~g~~~~A~~~~~~~~~~~p~~~~-----~~~a~~~lg~~~~~~~~~~~A~~~~~~~l~~~P~~~~~ 77 (225)
T 2yhc_A 3 PPNEIYATAQQKLQDGNWRQAITQLEALDNRYPFGPY-----SQQVQLDLIYAYYKNADLPLAQAAIDRFIRLNPTHPNI 77 (225)
T ss_dssp CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTSTT-----HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTTH
T ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChH-----HHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHCcCCCcH
Confidence 4678889999999999999999999999998887432 467899999999999999999999999999999875
Q ss_pred -HHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhCCChHHHHHHHHHHHHhCCCCHH----------
Q 006120 236 -RALKLLGSALFGVGEYRAAVKALEEAIFIKPDYADAHCDLASALHAMGEDERAIEVFQKAIDLKPGHVD---------- 304 (660)
Q Consensus 236 -~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~---------- 304 (660)
.+++.+|.++...+.. ....+..++.++..+|++++|+..|+++++..|++..
T Consensus 78 ~~a~~~~g~~~~~~~~~----------------~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~P~~~~a~~a~~~l~~ 141 (225)
T 2yhc_A 78 DYVMYMRGLTNMALDDS----------------ALQGFFGVDRSDRDPQQARAAFSDFSKLVRGYPNSQYTTDATKRLVF 141 (225)
T ss_dssp HHHHHHHHHHHHHHHC------------------------------CCHHHHHHHHHHHHHHTTCTTCTTHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhhhhh----------------hhhhhhccchhhcCcHHHHHHHHHHHHHHHHCcCChhHHHHHHHHHH
Confidence 3788888888763311 0111222333333344444444444444444444432
Q ss_pred -------HHHHHHHHHHHhcCCCHHHHHHHHHHHHcccCChh
Q 006120 305 -------ALYNLGGLYMDLGAGETEEAKKALKEALKMTNRVE 339 (660)
Q Consensus 305 -------a~~~La~~~~~~~~g~~~eA~~~~~~al~l~p~~~ 339 (660)
....+|.+|... |++++|+..|+++++..|+..
T Consensus 142 ~~~~~~~~~~~~a~~~~~~--~~~~~A~~~~~~~l~~~p~~~ 181 (225)
T 2yhc_A 142 LKDRLAKYEYSVAEYYTER--GAWVAVVNRVEGMLRDYPDTQ 181 (225)
T ss_dssp HHHHHHHHHHHHHHHHHHH--TCHHHHHHHHHHHHHHSTTSH
T ss_pred HHHHHHHHHHHHHHHHHHc--CcHHHHHHHHHHHHHHCcCCC
Confidence 236789999999 999999999999999998753
No 87
>4gco_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; 1.60A {Caenorhabditis elegans}
Probab=99.73 E-value=9e-17 Score=141.86 Aligned_cols=121 Identities=18% Similarity=0.161 Sum_probs=111.2
Q ss_pred HHHHhccCCCchhchHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh
Q 006120 185 ALEAAETGGNQWAYLLPQIYVNLGIALEGEGMVLSACEYYRESAILCPTHFRALKLLGSALFGVGEYRAAVKALEEAIFI 264 (660)
Q Consensus 185 al~~~p~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~ 264 (660)
+..++|+ .+..+.++|..+...|++++|+..|+++++++|.++.++.++|.++..+|++++|+..+++++++
T Consensus 5 ~a~inP~--------~a~~~~~~G~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~ 76 (126)
T 4gco_A 5 LAYINPE--------LAQEEKNKGNEYFKKGDYPTAMRHYNEAVKRDPENAILYSNRAACLTKLMEFQRALDDCDTCIRL 76 (126)
T ss_dssp --CCCHH--------HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHCHH--------HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHhhHHHhhccHHHHHHHHHHHHHh
Confidence 3446777 88999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCHHHHHHHHHHHHhCCChHHHHHHHHHHHHhCCCCHHHHHHHHHHH
Q 006120 265 KPDYADAHCDLASALHAMGEDERAIEVFQKAIDLKPGHVDALYNLGGLY 313 (660)
Q Consensus 265 ~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~La~~~ 313 (660)
+|+++.+|.++|.++..+|++++|+..|+++++++|++..++..|+.++
T Consensus 77 ~p~~~~a~~~lg~~~~~~~~~~~A~~~~~~al~l~P~~~~a~~~l~~~l 125 (126)
T 4gco_A 77 DSKFIKGYIRKAACLVAMREWSKAQRAYEDALQVDPSNEEAREGVRNCL 125 (126)
T ss_dssp CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHC
T ss_pred hhhhhHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCcCCHHHHHHHHHhc
Confidence 9999999999999999999999999999999999999999999888764
No 88
>2ifu_A Gamma-SNAP; membrane fusion, snare complex disassembly, protein structure initiative, PSI, center for eukaryotic structural genomics, CESG; HET: MSE; 2.60A {Danio rerio}
Probab=99.73 E-value=4.3e-16 Score=160.01 Aligned_cols=199 Identities=12% Similarity=0.049 Sum_probs=144.8
Q ss_pred HHHHHHHHHHHHHHHHhhcc--------CcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC------HHHHHHH
Q 006120 100 DYAVFVKELGVLRNRADGAR--------SREEAFDGHMAIGRVLYEHQLFKEALVSFKRACELQPTD------VRPHFRA 165 (660)
Q Consensus 100 ~~g~~~~Al~~l~~a~~~~~--------~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~------~~~~~~l 165 (660)
..|++.+|...++++.+..+ +.......+...|.++...|++++|+.+|.+++++.+.. ..++.++
T Consensus 3 ~~~~~~eA~~~~~~a~k~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~l 82 (307)
T 2ifu_A 3 AAQKISEAHEHIAKAEKYLKTSFMKWKPDYDSAASEYAKAAVAFKNAKQLEQAKDAYLQEAEAHANNRSLFHAAKAFEQA 82 (307)
T ss_dssp CHHHHHHHHHHHHHHHHHHCCCSSSCSCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred ccchHHHHHHHHHHHHHHccccccCCCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 35778888888888776443 334444556666777888888888888888887775422 4577778
Q ss_pred HHHHHHcCCHHHHHHHHHHHHHHhccCCCchhchHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCc------HHHHH
Q 006120 166 GNCLYVLGRYREAKEEYLLALEAAETGGNQWAYLLPQIYVNLGIALEGEGMVLSACEYYRESAILCPTH------FRALK 239 (660)
Q Consensus 166 a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~------~~~~~ 239 (660)
|.+|..+|++++|+.+|++++++.+..++... .+.++.++|.++.. |++++|+.+|++++.+.|.. ..++.
T Consensus 83 g~~~~~~g~~~~A~~~~~~Al~l~~~~g~~~~--~a~~~~~lg~~~~~-g~~~~A~~~~~~Al~~~~~~~~~~~~~~~~~ 159 (307)
T 2ifu_A 83 GMMLKDLQRMPEAVQYIEKASVMYVENGTPDT--AAMALDRAGKLMEP-LDLSKAVHLYQQAAAVFENEERLRQAAELIG 159 (307)
T ss_dssp HHHHHHTTCGGGGHHHHHHHHHHHHTTTCHHH--HHHHHHHHHHHHTT-TCHHHHHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred HHHHHhCCCHHHHHHHHHHHHHHHHHcCCHHH--HHHHHHHHHHHHHc-CCHHHHHHHHHHHHHHHHhCCChhHHHHHHH
Confidence 88888888888888888888887765544332 56777788888877 88888888888888775532 45777
Q ss_pred HHHHHHHHCCCHHHHHHHHHHHHHhCCCC------HHHHHHHHHHHHhCCChHHHHHHHHHHHHhCCCC
Q 006120 240 LLGSALFGVGEYRAAVKALEEAIFIKPDY------ADAHCDLASALHAMGEDERAIEVFQKAIDLKPGH 302 (660)
Q Consensus 240 ~lg~~~~~~g~~~~A~~~~~~al~~~p~~------~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~ 302 (660)
++|.++..+|++++|+.+|++++.+.|++ ..++.++|.++..+|++++|+.+|++++ ++|..
T Consensus 160 ~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~A~~~~~~al-~~p~~ 227 (307)
T 2ifu_A 160 KASRLLVRQQKFDEAAASLQKEKSMYKEMENYPTCYKKCIAQVLVQLHRADYVAAQKCVRESY-SIPGF 227 (307)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHT-TSTTS
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHHHHHcCChhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHh-CCCCC
Confidence 78888888888888888888888775433 3466777778888888888888888888 77754
No 89
>3edt_B KLC 2, kinesin light chain 2; superhelical, structural genomics, structural genomics conso SGC, microtubule, motor protein, phosphoprotein; 2.70A {Homo sapiens} PDB: 3ceq_A
Probab=99.72 E-value=2.1e-16 Score=158.37 Aligned_cols=243 Identities=12% Similarity=-0.013 Sum_probs=189.0
Q ss_pred HhccCchhhHHHHHHHHHHHHhhccCCcCCchHHhhhHHHHHHhCCchHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 006120 38 DDTWKIVDDLEILVKRLKAKQAKDGKLKGDNSDAFSDAGWSRELGTSAEISEKRVFWEESTHDYAVFVKELGVLRNRADG 117 (660)
Q Consensus 38 ~~~~~~~~al~~~~~~~~~a~~~~~~l~~~~~~a~~~~~~~~~l~~~~~~~~~~~~l~~~~~~~g~~~~Al~~l~~a~~~ 117 (660)
...+++.+|+..+.++++.... ..-...+.....+..++.++...|++.+|+..++++++.
T Consensus 12 ~~~~~~~~A~~~~~~al~~~~~-------------------~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~ 72 (283)
T 3edt_B 12 SGLVPRGSAVPLCKQALEDLEK-------------------TSGHDHPDVATMLNILALVYRDQNKYKEAAHLLNDALAI 72 (283)
T ss_dssp -CCSCSSSHHHHHHHHHHHHHH-------------------HHCSSSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHHHHHHHH-------------------hcCCCCHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHH
Confidence 4567788888888888883111 001234666778888899999999999999999999988
Q ss_pred c-----cCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--------CCCCHHHHHHHHHHHHHcCCHHHHHHHHHH
Q 006120 118 A-----RSREEAFDGHMAIGRVLYEHQLFKEALVSFKRACEL--------QPTDVRPHFRAGNCLYVLGRYREAKEEYLL 184 (660)
Q Consensus 118 ~-----~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~--------~p~~~~~~~~la~~~~~~g~~~~A~~~~~~ 184 (660)
. ++.+....++..+|.++...|++++|+.+|+++++. +|....++..+|.++...|++++|+.++++
T Consensus 73 ~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~ 152 (283)
T 3edt_B 73 REKTLGKDHPAVAATLNNLAVLYGKRGKYKEAEPLCKRALEIREKVLGKFHPDVAKQLNNLALLCQNQGKAEEVEYYYRR 152 (283)
T ss_dssp HHHHTCTTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHH
T ss_pred HHHHcCCcchHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHH
Confidence 6 566888899999999999999999999999999998 466678999999999999999999999999
Q ss_pred HHHHhccCCCchhchHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh---------CCCcHHHHHHHHHHHHHCCCH----
Q 006120 185 ALEAAETGGNQWAYLLPQIYVNLGIALEGEGMVLSACEYYRESAIL---------CPTHFRALKLLGSALFGVGEY---- 251 (660)
Q Consensus 185 al~~~p~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~---------~p~~~~~~~~lg~~~~~~g~~---- 251 (660)
++++..............++..+|.++...|++++|+.++++++++ .+.....+..++..+...+..
T Consensus 153 al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 232 (283)
T 3edt_B 153 ALEIYATRLGPDDPNVAKTKNNLASCYLKQGKYQDAETLYKEILTRAHEKEFGSVNGDNKPIWMHAEEREESKDKRRDSA 232 (283)
T ss_dssp HHHHHHHHSCTTCHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHSSSCCSSCCCHHHHHHHHHHTTCCCCC--
T ss_pred HHHHHHHhcCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCcchhHHHHHHHHHHHHhcCCchhHHH
Confidence 9998321110000117889999999999999999999999999987 445556777777777765543
Q ss_pred --HHHHHHHHHHHHhCCCCHHHHHHHHHHHHhCCChHHHHHHHHHHHHhC
Q 006120 252 --RAAVKALEEAIFIKPDYADAHCDLASALHAMGEDERAIEVFQKAIDLK 299 (660)
Q Consensus 252 --~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~ 299 (660)
.++...++......|....++..+|.+|..+|++++|+.+++++++..
T Consensus 233 ~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~ 282 (283)
T 3edt_B 233 PYGEYGSWYKACKVDSPTVNTTLRSLGALYRRQGKLEAAHTLEDCASRNR 282 (283)
T ss_dssp ----------CCCCCCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhh
Confidence 334444443333445667889999999999999999999999998753
No 90
>2r5s_A Uncharacterized protein VP0806; APC090868.1, vibrio parahaemolyticus RIMD 22 structural genomics, PSI-2, protein structure initiative; HET: MES; 2.14A {Vibrio parahaemolyticus}
Probab=99.71 E-value=6e-17 Score=151.83 Aligned_cols=160 Identities=15% Similarity=0.163 Sum_probs=79.2
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHhccCCCchhchHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCcHHHHHHH
Q 006120 162 HFRAGNCLYVLGRYREAKEEYLLALEAAETGGNQWAYLLPQIYVNLGIALEGEGMVLSACEYYRESAILCPTHFRALKLL 241 (660)
Q Consensus 162 ~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l 241 (660)
+..+|..+...|++++|+..|+++++.+|+ .+.++..+|.++...|++++|+..+++++...| ++..+..+
T Consensus 9 ~~~~a~~~~~~g~~~~A~~~~~~al~~~P~--------~~~a~~~la~~~~~~g~~~~A~~~~~~a~~~~p-~~~~~~~~ 79 (176)
T 2r5s_A 9 LLKQVSELLQQGEHAQALNVIQTLSDELQS--------RGDVKLAKADCLLETKQFELAQELLATIPLEYQ-DNSYKSLI 79 (176)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHTSCHHHHT--------SHHHHHHHHHHHHHTTCHHHHHHHHTTCCGGGC-CHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHCCC--------cHHHHHHHHHHHHHCCCHHHHHHHHHHhhhccC-ChHHHHHH
Confidence 344444444444444444444444444444 444444444444444444444444444444444 43333333
Q ss_pred HHHHH-HCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhCCChHHHHHHHHHHHHhCCCC--HHHHHHHHHHHHHhcC
Q 006120 242 GSALF-GVGEYRAAVKALEEAIFIKPDYADAHCDLASALHAMGEDERAIEVFQKAIDLKPGH--VDALYNLGGLYMDLGA 318 (660)
Q Consensus 242 g~~~~-~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~--~~a~~~La~~~~~~~~ 318 (660)
+.+.. ..+...+|+..++++++++|+++.+++++|.++...|++++|+..|+++++.+|+. ..++..++.++..+
T Consensus 80 ~~~~~~~~~~~~~a~~~~~~al~~~P~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~a~~~l~~~~~~~-- 157 (176)
T 2r5s_A 80 AKLELHQQAAESPELKRLEQELAANPDNFELACELAVQYNQVGRDEEALELLWNILKVNLGAQDGEVKKTFMDILSAL-- 157 (176)
T ss_dssp HHHHHHHHHTSCHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCTTTTTTHHHHHHHHHHHHH--
T ss_pred HHHHHHhhcccchHHHHHHHHHHhCCCCHHHHHHHHHHHHHcccHHHHHHHHHHHHHhCcccChHHHHHHHHHHHHHh--
Confidence 32211 11122234555555555555555555555555555555555555555555555543 33555555555555
Q ss_pred CCHHHHHHHHHHHH
Q 006120 319 GETEEAKKALKEAL 332 (660)
Q Consensus 319 g~~~eA~~~~~~al 332 (660)
|+.++|+..|++++
T Consensus 158 g~~~~A~~~y~~al 171 (176)
T 2r5s_A 158 GQGNAIASKYRRQL 171 (176)
T ss_dssp CSSCHHHHHHHHHH
T ss_pred CCCCcHHHHHHHHH
Confidence 55555555555554
No 91
>3qou_A Protein YBBN; thioredoxin-like fold, tetratricopeptide repeat, lysine dimethylation, protein binding; HET: MLY; 1.80A {Escherichia coli} PDB: 3qdn_A*
Probab=99.70 E-value=2.6e-16 Score=159.96 Aligned_cols=168 Identities=14% Similarity=0.099 Sum_probs=103.5
Q ss_pred CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhccCCCchhchHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCcH
Q 006120 156 PTDVRPHFRAGNCLYVLGRYREAKEEYLLALEAAETGGNQWAYLLPQIYVNLGIALEGEGMVLSACEYYRESAILCPTHF 235 (660)
Q Consensus 156 p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~ 235 (660)
|.+...+..+|..+...|++++|+..|+++++.+|+ .+.+++.+|.++...|++++|+..+++++..+|+..
T Consensus 114 p~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~P~--------~~~a~~~la~~~~~~g~~~~A~~~l~~~~~~~p~~~ 185 (287)
T 3qou_A 114 PREEELXAQQAMQLMQESNYTDALPLLXDAWQLSNQ--------NGEIGLLLAETLIALNRSEDAEAVLXTIPLQDQDTR 185 (287)
T ss_dssp CCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTS--------CHHHHHHHHHHHHHTTCHHHHHHHHTTSCGGGCSHH
T ss_pred CCchhhHHHHHHHHHhCCCHHHHHHHHHHHHHhCCc--------chhHHHHHHHHHHHCCCHHHHHHHHHhCchhhcchH
Confidence 555556666666666666666666666666666665 455666666666666666666666666666666555
Q ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhCCChHHHHHHHHHHHHhCCCC--HHHHHHHHHHH
Q 006120 236 RALKLLGSALFGVGEYRAAVKALEEAIFIKPDYADAHCDLASALHAMGEDERAIEVFQKAIDLKPGH--VDALYNLGGLY 313 (660)
Q Consensus 236 ~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~--~~a~~~La~~~ 313 (660)
......+..+...++.++|+..+++++..+|+++.+++++|.++...|++++|+..|+++++.+|++ ..++.+++.++
T Consensus 186 ~~~~~~~~~l~~~~~~~~a~~~l~~al~~~P~~~~~~~~la~~l~~~g~~~~A~~~l~~~l~~~p~~~~~~a~~~l~~~~ 265 (287)
T 3qou_A 186 YQGLVAQIELLXQAADTPEIQQLQQQVAENPEDAALATQLALQLHQVGRNEEALELLFGHLRXDLTAADGQTRXTFQEIL 265 (287)
T ss_dssp HHHHHHHHHHHHHHTSCHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTGGGGHHHHHHHHHH
T ss_pred HHHHHHHHHHHhhcccCccHHHHHHHHhcCCccHHHHHHHHHHHHHcccHHHHHHHHHHHHhcccccccchHHHHHHHHH
Confidence 5555555555555566666666666666666666666666666666666666666666666666665 55666666666
Q ss_pred HHhcCCCHHHHHHHHHHHHc
Q 006120 314 MDLGAGETEEAKKALKEALK 333 (660)
Q Consensus 314 ~~~~~g~~~eA~~~~~~al~ 333 (660)
..+ |+.++|...|++++.
T Consensus 266 ~~~--g~~~~a~~~~r~al~ 283 (287)
T 3qou_A 266 AAL--GTGDALASXYRRQLY 283 (287)
T ss_dssp HHH--CTTCHHHHHHHHHHH
T ss_pred HHc--CCCCcHHHHHHHHHH
Confidence 666 666666666666553
No 92
>2ooe_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 3.00A {Mus musculus} SCOP: a.118.8.7
Probab=99.70 E-value=1.3e-15 Score=168.79 Aligned_cols=221 Identities=11% Similarity=0.052 Sum_probs=198.0
Q ss_pred HHHHHHHHHHHhhccCcHHHHHHHHHHHHHHHH-------cCCHH-------HHHHHHHHHHH-hCCCCHHHHHHHHHHH
Q 006120 105 VKELGVLRNRADGARSREEAFDGHMAIGRVLYE-------HQLFK-------EALVSFKRACE-LQPTDVRPHFRAGNCL 169 (660)
Q Consensus 105 ~~Al~~l~~a~~~~~~~~~~~~~~~~lg~~~~~-------~g~~~-------~A~~~~~~al~-~~p~~~~~~~~la~~~ 169 (660)
.+++..+++++...+..+ .+|+.+|..+.. .|+++ +|+..|+++++ ..|++..+|..+|.++
T Consensus 255 ~~a~~~y~~al~~~p~~~---~~w~~~~~~~~~~~~~~~~~g~~~~a~~~~~~A~~~~~~Al~~~~p~~~~l~~~~~~~~ 331 (530)
T 2ooe_A 255 KRVMFAYEQCLLVLGHHP---DIWYEAAQYLEQSSKLLAEKGDMNNAKLFSDEAANIYERAISTLLKKNMLLYFAYADYE 331 (530)
T ss_dssp HHHHHHHHHHHHHHTTCH---HHHHHHHHHHHHHHHHHHTTTCCHHHHHHHHHHHHHHHHHTTTTCSSCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCCCCH---HHHHHHHHHHHHhchhhhhccchhhhhhhhHHHHHHHHHHHHHhCcccHHHHHHHHHHH
Confidence 367788999998887765 889999999886 79987 99999999998 7999999999999999
Q ss_pred HHcCCHHHHHHHHHHHHHHhccCCCchhchHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCcHHHHHHHHHH-HHHC
Q 006120 170 YVLGRYREAKEEYLLALEAAETGGNQWAYLLPQIYVNLGIALEGEGMVLSACEYYRESAILCPTHFRALKLLGSA-LFGV 248 (660)
Q Consensus 170 ~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~-~~~~ 248 (660)
...|++++|...|++++++.|.. ...+|..++.++...|++++|...|+++++..|.....+...+.+ +...
T Consensus 332 ~~~g~~~~A~~~~~~al~~~p~~-------~~~~~~~~~~~~~~~~~~~~A~~~~~~Al~~~~~~~~~~~~~a~~~~~~~ 404 (530)
T 2ooe_A 332 ESRMKYEKVHSIYNRLLAIEDID-------PTLVYIQYMKFARRAEGIKSGRMIFKKAREDARTRHHVYVTAALMEYYCS 404 (530)
T ss_dssp HHTTCHHHHHHHHHHHHHSSSSC-------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCTTCCTHHHHHHHHHHHHHT
T ss_pred HhcCCHHHHHHHHHHHhCccccC-------chHHHHHHHHHHHHhcCHHHHHHHHHHHHhccCCchHHHHHHHHHHHHHc
Confidence 99999999999999999998862 246899999999999999999999999999999887777776665 3468
Q ss_pred CCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhCCChHHHHHHHHHHHHhCCCCHH----HHHHHHHHHHHhcCCCHHHH
Q 006120 249 GEYRAAVKALEEAIFIKPDYADAHCDLASALHAMGEDERAIEVFQKAIDLKPGHVD----ALYNLGGLYMDLGAGETEEA 324 (660)
Q Consensus 249 g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~----a~~~La~~~~~~~~g~~~eA 324 (660)
|++++|...|+++++..|+++.+|..++.++...|+.++|...|++++...|.++. .|.......... |+.+.+
T Consensus 405 ~~~~~A~~~~e~al~~~p~~~~~~~~~~~~~~~~g~~~~Ar~~~~~al~~~~~~~~~~~~lw~~~~~~e~~~--G~~~~~ 482 (530)
T 2ooe_A 405 KDKSVAFKIFELGLKKYGDIPEYVLAYIDYLSHLNEDNNTRVLFERVLTSGSLPPEKSGEIWARFLAFESNI--GDLASI 482 (530)
T ss_dssp CCHHHHHHHHHHHHHHHTTCHHHHHHHHHHHTTTTCHHHHHHHHHHHHHSCCSCGGGCHHHHHHHHHHHHHS--SCHHHH
T ss_pred CChhHHHHHHHHHHHHCCCCHHHHHHHHHHHHhCCCHhhHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHc--CCHHHH
Confidence 99999999999999999999999999999999999999999999999998766543 787888888777 999999
Q ss_pred HHHHHHHHcccCC
Q 006120 325 KKALKEALKMTNR 337 (660)
Q Consensus 325 ~~~~~~al~l~p~ 337 (660)
..+++++++..|+
T Consensus 483 ~~~~~r~~~~~p~ 495 (530)
T 2ooe_A 483 LKVEKRRFTAFRE 495 (530)
T ss_dssp HHHHHHHHHHTHH
T ss_pred HHHHHHHHHHCch
Confidence 9999999999874
No 93
>3e4b_A ALGK; tetratricopeptide repeat, superhelix, alginate biosynt pseudomonas, protein binding; 2.50A {Pseudomonas fluorescens}
Probab=99.70 E-value=1.2e-15 Score=165.62 Aligned_cols=225 Identities=15% Similarity=0.078 Sum_probs=176.4
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHhhcc-CcHHHHHHHHHHHHHHHHcC---CHHHHHHHHHHHHHhCCCCHHHHHHH
Q 006120 90 KRVFWEESTHDYAVFVKELGVLRNRADGAR-SREEAFDGHMAIGRVLYEHQ---LFKEALVSFKRACELQPTDVRPHFRA 165 (660)
Q Consensus 90 ~~~~l~~~~~~~g~~~~Al~~l~~a~~~~~-~~~~~~~~~~~lg~~~~~~g---~~~~A~~~~~~al~~~p~~~~~~~~l 165 (660)
+...++.++...+.+.+++.......+... ..+ .+++.+|.++...| ++++|+.+|+++.+..|..+..++++
T Consensus 143 a~~~Lg~~y~~~~~~~~~~~~a~~~~~~a~~~~~---~a~~~Lg~~~~~~g~~~~~~~A~~~~~~aa~~g~~~a~~~~~L 219 (452)
T 3e4b_A 143 AGLAQVLLYRTQGTYDQHLDDVERICKAALNTTD---ICYVELATVYQKKQQPEQQAELLKQMEAGVSRGTVTAQRVDSV 219 (452)
T ss_dssp HHHHHHHHHHHHTCGGGGHHHHHHHHHHHTTTCT---THHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCSCHHHHHHH
T ss_pred HHHHHHHHHHcCCCcccCHHHHHHHHHHHHcCCH---HHHHHHHHHHHHcCCcccHHHHHHHHHHHHHCCCHHHHHHHHH
Confidence 444555566665544444444332222222 222 37889999999999 99999999999999999888888999
Q ss_pred HHHHHHc----CCHHHHHHHHHHHHHHhccCCCchhchHHHHHHHHHHH-H--HHCCCHHHHHHHHHHHHHhCCCcHHHH
Q 006120 166 GNCLYVL----GRYREAKEEYLLALEAAETGGNQWAYLLPQIYVNLGIA-L--EGEGMVLSACEYYRESAILCPTHFRAL 238 (660)
Q Consensus 166 a~~~~~~----g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~la~~-~--~~~g~~~~A~~~~~~al~~~p~~~~~~ 238 (660)
|.+|... +++++|+.+|+++. |. .+.+++++|.+ + ...+++++|+.+|+++.+. .++.++
T Consensus 220 g~~y~~g~~~~~d~~~A~~~~~~aa---~g--------~~~a~~~Lg~~~~~~~~~~d~~~A~~~~~~Aa~~--g~~~A~ 286 (452)
T 3e4b_A 220 ARVLGDATLGTPDEKTAQALLEKIA---PG--------YPASWVSLAQLLYDFPELGDVEQMMKYLDNGRAA--DQPRAE 286 (452)
T ss_dssp HHHHTCGGGSSCCHHHHHHHHHHHG---GG--------STHHHHHHHHHHHHSGGGCCHHHHHHHHHHHHHT--TCHHHH
T ss_pred HHHHhCCCCCCCCHHHHHHHHHHHc---CC--------CHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHC--CCHHHH
Confidence 9998765 78999999999987 55 67888999988 4 5688999999999998865 588899
Q ss_pred HHHHHHHHHCC-----CHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHh----CCChHHHHHHHHHHHHhCCCCHHHHHHH
Q 006120 239 KLLGSALFGVG-----EYRAAVKALEEAIFIKPDYADAHCDLASALHA----MGEDERAIEVFQKAIDLKPGHVDALYNL 309 (660)
Q Consensus 239 ~~lg~~~~~~g-----~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~----~g~~~~A~~~~~~al~~~p~~~~a~~~L 309 (660)
+++|.+|. .| ++++|+.+|+++. +.++.++++||.+|.. ..++++|+.+|+++.+ +.++.+.++|
T Consensus 287 ~~Lg~~y~-~G~g~~~d~~~A~~~~~~Aa---~g~~~A~~~Lg~~y~~G~g~~~d~~~A~~~~~~Aa~--~g~~~A~~~L 360 (452)
T 3e4b_A 287 LLLGKLYY-EGKWVPADAKAAEAHFEKAV---GREVAADYYLGQIYRRGYLGKVYPQKALDHLLTAAR--NGQNSADFAI 360 (452)
T ss_dssp HHHHHHHH-HCSSSCCCHHHHHHHHHTTT---TTCHHHHHHHHHHHHTTTTSSCCHHHHHHHHHHHHT--TTCTTHHHHH
T ss_pred HHHHHHHH-cCCCCCCCHHHHHHHHHHHh---CCCHHHHHHHHHHHHCCCCCCcCHHHHHHHHHHHHh--hChHHHHHHH
Confidence 99999988 45 9999999999988 8889999999988877 4489999999999876 4567889999
Q ss_pred HHHHHHhc--CCCHHHHHHHHHHHHcccC
Q 006120 310 GGLYMDLG--AGETEEAKKALKEALKMTN 336 (660)
Q Consensus 310 a~~~~~~~--~g~~~eA~~~~~~al~l~p 336 (660)
|.+|..-. ..++.+|..+|+++.+..+
T Consensus 361 g~~y~~G~g~~~d~~~A~~~~~~A~~~g~ 389 (452)
T 3e4b_A 361 AQLFSQGKGTKPDPLNAYVFSQLAKAQDT 389 (452)
T ss_dssp HHHHHSCTTBCCCHHHHHHHHHHHHTTCC
T ss_pred HHHHHhCCCCCCCHHHHHHHHHHHHHCCC
Confidence 99987510 2589999999999988764
No 94
>3qou_A Protein YBBN; thioredoxin-like fold, tetratricopeptide repeat, lysine dimethylation, protein binding; HET: MLY; 1.80A {Escherichia coli} PDB: 3qdn_A*
Probab=99.70 E-value=3.1e-16 Score=159.43 Aligned_cols=166 Identities=13% Similarity=0.083 Sum_probs=158.4
Q ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhccCCCchhchHHHH
Q 006120 124 AFDGHMAIGRVLYEHQLFKEALVSFKRACELQPTDVRPHFRAGNCLYVLGRYREAKEEYLLALEAAETGGNQWAYLLPQI 203 (660)
Q Consensus 124 ~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~ 203 (660)
....++.+|..+...|++++|+..|+++++.+|+++.+++.+|.++...|++++|+..+++++...|+ ....
T Consensus 116 ~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~la~~~~~~g~~~~A~~~l~~~~~~~p~--------~~~~ 187 (287)
T 3qou_A 116 EEELXAQQAMQLMQESNYTDALPLLXDAWQLSNQNGEIGLLLAETLIALNRSEDAEAVLXTIPLQDQD--------TRYQ 187 (287)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHTTCHHHHHHHHTTSCGGGCS--------HHHH
T ss_pred chhhHHHHHHHHHhCCCHHHHHHHHHHHHHhCCcchhHHHHHHHHHHHCCCHHHHHHHHHhCchhhcc--------hHHH
Confidence 34788999999999999999999999999999999999999999999999999999999999999996 6677
Q ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCC--HHHHHHHHHHHHh
Q 006120 204 YVNLGIALEGEGMVLSACEYYRESAILCPTHFRALKLLGSALFGVGEYRAAVKALEEAIFIKPDY--ADAHCDLASALHA 281 (660)
Q Consensus 204 ~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~--~~~~~~la~~~~~ 281 (660)
....+..+...++.++|+..+++++..+|+++.+++++|.++...|++++|+..|+++++.+|++ ..++.+++.++..
T Consensus 188 ~~~~~~~l~~~~~~~~a~~~l~~al~~~P~~~~~~~~la~~l~~~g~~~~A~~~l~~~l~~~p~~~~~~a~~~l~~~~~~ 267 (287)
T 3qou_A 188 GLVAQIELLXQAADTPEIQQLQQQVAENPEDAALATQLALQLHQVGRNEEALELLFGHLRXDLTAADGQTRXTFQEILAA 267 (287)
T ss_dssp HHHHHHHHHHHHTSCHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTGGGGHHHHHHHHHHHH
T ss_pred HHHHHHHHHhhcccCccHHHHHHHHhcCCccHHHHHHHHHHHHHcccHHHHHHHHHHHHhcccccccchHHHHHHHHHHH
Confidence 77888888899999999999999999999999999999999999999999999999999999998 8999999999999
Q ss_pred CCChHHHHHHHHHHHH
Q 006120 282 MGEDERAIEVFQKAID 297 (660)
Q Consensus 282 ~g~~~~A~~~~~~al~ 297 (660)
+|+.++|+..|++++.
T Consensus 268 ~g~~~~a~~~~r~al~ 283 (287)
T 3qou_A 268 LGTGDALASXYRRQLY 283 (287)
T ss_dssp HCTTCHHHHHHHHHHH
T ss_pred cCCCCcHHHHHHHHHH
Confidence 9999999999999875
No 95
>3gyz_A Chaperone protein IPGC; asymmetric homodimer, tetratricopeptide repeat, TPR, chapero virulence; 2.15A {Shigella flexneri} PDB: 3gz1_A 3gz2_A 3ks2_A
Probab=99.69 E-value=6.9e-17 Score=147.18 Aligned_cols=123 Identities=11% Similarity=0.115 Sum_probs=113.6
Q ss_pred HHHHHHHHHHhCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhCCChHHHHHHHHHHHHhC
Q 006120 220 ACEYYRESAILCPTHFRALKLLGSALFGVGEYRAAVKALEEAIFIKPDYADAHCDLASALHAMGEDERAIEVFQKAIDLK 299 (660)
Q Consensus 220 A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~ 299 (660)
+-..+++++.++|+++.+++.+|.++...|++++|+..|++++.++|+++.+|.++|.++..+|++++|+.+|+++++++
T Consensus 21 ~~~~l~~al~l~p~~~~~~~~lg~~~~~~g~~~eA~~~~~~al~~~P~~~~~~~~lg~~~~~~g~~~~Ai~~~~~al~l~ 100 (151)
T 3gyz_A 21 SGATLKDINAIPDDMMDDIYSYAYDFYNKGRIEEAEVFFRFLCIYDFYNVDYIMGLAAIYQIKEQFQQAADLYAVAFALG 100 (151)
T ss_dssp TSCCTGGGCCSCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS
T ss_pred CCCCHHHHhCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHccHHHHHHHHHHHHhhC
Confidence 33456777888999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHcccCChhHHHHH
Q 006120 300 PGHVDALYNLGGLYMDLGAGETEEAKKALKEALKMTNRVELHDAV 344 (660)
Q Consensus 300 p~~~~a~~~La~~~~~~~~g~~~eA~~~~~~al~l~p~~~~~~~~ 344 (660)
|+++.+++++|.+|..+ |++++|+.+|++++++.|+.+.....
T Consensus 101 P~~~~~~~~lg~~~~~l--g~~~eA~~~~~~al~l~~~~~~~~~A 143 (151)
T 3gyz_A 101 KNDYTPVFHTGQCQLRL--KAPLKAKECFELVIQHSNDEKLKIKA 143 (151)
T ss_dssp SSCCHHHHHHHHHHHHT--TCHHHHHHHHHHHHHHCCCHHHHHHH
T ss_pred CCCcHHHHHHHHHHHHc--CCHHHHHHHHHHHHHhCCCHHHHHHH
Confidence 99999999999999999 99999999999999999987654433
No 96
>3e4b_A ALGK; tetratricopeptide repeat, superhelix, alginate biosynt pseudomonas, protein binding; 2.50A {Pseudomonas fluorescens}
Probab=99.69 E-value=2.2e-15 Score=163.48 Aligned_cols=190 Identities=16% Similarity=0.080 Sum_probs=160.9
Q ss_pred HHHHHHHHHHHHcCCHHH----HHHHHHHHHHhCCCCHHHHHHHHHHHHHcC---CHHHHHHHHHHHHHHhccCCCchhc
Q 006120 126 DGHMAIGRVLYEHQLFKE----ALVSFKRACELQPTDVRPHFRAGNCLYVLG---RYREAKEEYLLALEAAETGGNQWAY 198 (660)
Q Consensus 126 ~~~~~lg~~~~~~g~~~~----A~~~~~~al~~~p~~~~~~~~la~~~~~~g---~~~~A~~~~~~al~~~p~~~~~~~~ 198 (660)
.+++.+|.++...+.+++ +..+++.+...+ +.+++.+|.+|...| ++++|+.+|+++.+..+.
T Consensus 142 ~a~~~Lg~~y~~~~~~~~~~~~a~~~~~~a~~~~---~~a~~~Lg~~~~~~g~~~~~~~A~~~~~~aa~~g~~------- 211 (452)
T 3e4b_A 142 EAGLAQVLLYRTQGTYDQHLDDVERICKAALNTT---DICYVELATVYQKKQQPEQQAELLKQMEAGVSRGTV------- 211 (452)
T ss_dssp THHHHHHHHHHHHTCGGGGHHHHHHHHHHHTTTC---TTHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCS-------
T ss_pred HHHHHHHHHHHcCCCcccCHHHHHHHHHHHHcCC---HHHHHHHHHHHHHcCCcccHHHHHHHHHHHHHCCCH-------
Confidence 456777777777774444 444444444444 449999999999999 999999999999999887
Q ss_pred hHHHHHHHHHHHHHHC----CCHHHHHHHHHHHHHhCCCcHHHHHHHHHH-H--HHCCCHHHHHHHHHHHHHhCCCCHHH
Q 006120 199 LLPQIYVNLGIALEGE----GMVLSACEYYRESAILCPTHFRALKLLGSA-L--FGVGEYRAAVKALEEAIFIKPDYADA 271 (660)
Q Consensus 199 ~~~~~~~~la~~~~~~----g~~~~A~~~~~~al~~~p~~~~~~~~lg~~-~--~~~g~~~~A~~~~~~al~~~p~~~~~ 271 (660)
.+..++++|.+|... +++++|+.+|+++. |.++.+++++|.+ + ...+++++|+.+|+++.+. +++.+
T Consensus 212 -~a~~~~~Lg~~y~~g~~~~~d~~~A~~~~~~aa---~g~~~a~~~Lg~~~~~~~~~~d~~~A~~~~~~Aa~~--g~~~A 285 (452)
T 3e4b_A 212 -TAQRVDSVARVLGDATLGTPDEKTAQALLEKIA---PGYPASWVSLAQLLYDFPELGDVEQMMKYLDNGRAA--DQPRA 285 (452)
T ss_dssp -CHHHHHHHHHHHTCGGGSSCCHHHHHHHHHHHG---GGSTHHHHHHHHHHHHSGGGCCHHHHHHHHHHHHHT--TCHHH
T ss_pred -HHHHHHHHHHHHhCCCCCCCCHHHHHHHHHHHc---CCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHC--CCHHH
Confidence 677789999999765 79999999999997 8999999999999 4 4689999999999999965 58999
Q ss_pred HHHHHHHHHhCC-----ChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhc---CCCHHHHHHHHHHHHcccC
Q 006120 272 HCDLASALHAMG-----EDERAIEVFQKAIDLKPGHVDALYNLGGLYMDLG---AGETEEAKKALKEALKMTN 336 (660)
Q Consensus 272 ~~~la~~~~~~g-----~~~~A~~~~~~al~~~p~~~~a~~~La~~~~~~~---~g~~~eA~~~~~~al~l~p 336 (660)
+++||.+|. .| ++++|+.+|+++. +.++.++++||.+|.. | ..++++|..+|+++.+...
T Consensus 286 ~~~Lg~~y~-~G~g~~~d~~~A~~~~~~Aa---~g~~~A~~~Lg~~y~~-G~g~~~d~~~A~~~~~~Aa~~g~ 353 (452)
T 3e4b_A 286 ELLLGKLYY-EGKWVPADAKAAEAHFEKAV---GREVAADYYLGQIYRR-GYLGKVYPQKALDHLLTAARNGQ 353 (452)
T ss_dssp HHHHHHHHH-HCSSSCCCHHHHHHHHHTTT---TTCHHHHHHHHHHHHT-TTTSSCCHHHHHHHHHHHHTTTC
T ss_pred HHHHHHHHH-cCCCCCCCHHHHHHHHHHHh---CCCHHHHHHHHHHHHC-CCCCCcCHHHHHHHHHHHHhhCh
Confidence 999999998 55 9999999999998 8999999999999986 1 1499999999999998653
No 97
>4gco_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; 1.60A {Caenorhabditis elegans}
Probab=99.69 E-value=2.6e-16 Score=138.85 Aligned_cols=117 Identities=18% Similarity=0.215 Sum_probs=63.0
Q ss_pred hCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhccCCCchhchHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCC
Q 006120 154 LQPTDVRPHFRAGNCLYVLGRYREAKEEYLLALEAAETGGNQWAYLLPQIYVNLGIALEGEGMVLSACEYYRESAILCPT 233 (660)
Q Consensus 154 ~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~ 233 (660)
++|+.+..+..+|..++..|++++|+..|+++++++|. .+.++.++|.++..+|++++|+..++++++++|+
T Consensus 8 inP~~a~~~~~~G~~~~~~g~~~~A~~~~~~al~~~p~--------~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~ 79 (126)
T 4gco_A 8 INPELAQEEKNKGNEYFKKGDYPTAMRHYNEAVKRDPE--------NAILYSNRAACLTKLMEFQRALDDCDTCIRLDSK 79 (126)
T ss_dssp CCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT--------CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT
T ss_pred HCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC--------CHHHHHHHhhHHHhhccHHHHHHHHHHHHHhhhh
Confidence 44444555555555555555555555555555555554 4455555555555555555555555555555555
Q ss_pred cHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHH
Q 006120 234 HFRALKLLGSALFGVGEYRAAVKALEEAIFIKPDYADAHCDLASA 278 (660)
Q Consensus 234 ~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~ 278 (660)
++.++.++|.++..+|++++|+..|+++++++|++..++..++.+
T Consensus 80 ~~~a~~~lg~~~~~~~~~~~A~~~~~~al~l~P~~~~a~~~l~~~ 124 (126)
T 4gco_A 80 FIKGYIRKAACLVAMREWSKAQRAYEDALQVDPSNEEAREGVRNC 124 (126)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCcCCHHHHHHHHHh
Confidence 555555555555555555555555555555555555555555543
No 98
>2ifu_A Gamma-SNAP; membrane fusion, snare complex disassembly, protein structure initiative, PSI, center for eukaryotic structural genomics, CESG; HET: MSE; 2.60A {Danio rerio}
Probab=99.68 E-value=5.3e-16 Score=159.32 Aligned_cols=194 Identities=16% Similarity=0.128 Sum_probs=160.7
Q ss_pred CCHHHHHHHHHHHHHhCCC-------C----HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhccCCCchhchHHHHHHHH
Q 006120 139 QLFKEALVSFKRACELQPT-------D----VRPHFRAGNCLYVLGRYREAKEEYLLALEAAETGGNQWAYLLPQIYVNL 207 (660)
Q Consensus 139 g~~~~A~~~~~~al~~~p~-------~----~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~l 207 (660)
|++++|..+++++.+..+. + ...+...|.+|...|++++|+..|.+++++.+..++... ...++.++
T Consensus 5 ~~~~eA~~~~~~a~k~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~--~a~~~~~l 82 (307)
T 2ifu_A 5 QKISEAHEHIAKAEKYLKTSFMKWKPDYDSAASEYAKAAVAFKNAKQLEQAKDAYLQEAEAHANNRSLFH--AAKAFEQA 82 (307)
T ss_dssp HHHHHHHHHHHHHHHHHCCCSSSCSCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHH--HHHHHHHH
T ss_pred chHHHHHHHHHHHHHHccccccCCCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCCHHH--HHHHHHHH
Confidence 4455555555555543221 1 123445578999999999999999999999987765544 67899999
Q ss_pred HHHHHHCCCHHHHHHHHHHHHHhCCC------cHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCC------HHHHHHH
Q 006120 208 GIALEGEGMVLSACEYYRESAILCPT------HFRALKLLGSALFGVGEYRAAVKALEEAIFIKPDY------ADAHCDL 275 (660)
Q Consensus 208 a~~~~~~g~~~~A~~~~~~al~~~p~------~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~------~~~~~~l 275 (660)
|.++..+|++++|+.+|++++++.+. ...++.++|.+|.. |++++|+.+|++++.+.+.. ..++.++
T Consensus 83 g~~~~~~g~~~~A~~~~~~Al~l~~~~g~~~~~a~~~~~lg~~~~~-g~~~~A~~~~~~Al~~~~~~~~~~~~~~~~~~l 161 (307)
T 2ifu_A 83 GMMLKDLQRMPEAVQYIEKASVMYVENGTPDTAAMALDRAGKLMEP-LDLSKAVHLYQQAAAVFENEERLRQAAELIGKA 161 (307)
T ss_dssp HHHHHHTTCGGGGHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHTT-TCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHhCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHc-CCHHHHHHHHHHHHHHHHhCCChhHHHHHHHHH
Confidence 99999999999999999999988532 25688999999999 99999999999999997643 5789999
Q ss_pred HHHHHhCCChHHHHHHHHHHHHhCCCC------HHHHHHHHHHHHHhcCCCHHHHHHHHHHHHcccCCh
Q 006120 276 ASALHAMGEDERAIEVFQKAIDLKPGH------VDALYNLGGLYMDLGAGETEEAKKALKEALKMTNRV 338 (660)
Q Consensus 276 a~~~~~~g~~~~A~~~~~~al~~~p~~------~~a~~~La~~~~~~~~g~~~eA~~~~~~al~l~p~~ 338 (660)
|.++..+|++++|+.+|++++.+.|.+ ..++..+|.++..+ |++++|+.+|++++ +.|..
T Consensus 162 g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~g~~~~~~--g~~~~A~~~~~~al-~~p~~ 227 (307)
T 2ifu_A 162 SRLLVRQQKFDEAAASLQKEKSMYKEMENYPTCYKKCIAQVLVQLHR--ADYVAAQKCVRESY-SIPGF 227 (307)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHT--TCHHHHHHHHHHHT-TSTTS
T ss_pred HHHHHHcCCHHHHHHHHHHHHHHHHHcCChhHHHHHHHHHHHHHHHc--CCHHHHHHHHHHHh-CCCCC
Confidence 999999999999999999999986543 34788899999988 99999999999999 98863
No 99
>2r5s_A Uncharacterized protein VP0806; APC090868.1, vibrio parahaemolyticus RIMD 22 structural genomics, PSI-2, protein structure initiative; HET: MES; 2.14A {Vibrio parahaemolyticus}
Probab=99.68 E-value=2.4e-16 Score=147.73 Aligned_cols=163 Identities=11% Similarity=0.100 Sum_probs=143.6
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhccCCCchhchHHHHHH
Q 006120 126 DGHMAIGRVLYEHQLFKEALVSFKRACELQPTDVRPHFRAGNCLYVLGRYREAKEEYLLALEAAETGGNQWAYLLPQIYV 205 (660)
Q Consensus 126 ~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~ 205 (660)
+.++.+|..+...|++++|+..|+++++.+|+++.+++.+|.++...|++++|+..+++++...| .. ..+.
T Consensus 7 ~~~~~~a~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~la~~~~~~g~~~~A~~~~~~a~~~~p-~~--------~~~~ 77 (176)
T 2r5s_A 7 EQLLKQVSELLQQGEHAQALNVIQTLSDELQSRGDVKLAKADCLLETKQFELAQELLATIPLEYQ-DN--------SYKS 77 (176)
T ss_dssp TTHHHHHHHHHHTTCHHHHHHHHHTSCHHHHTSHHHHHHHHHHHHHTTCHHHHHHHHTTCCGGGC-CH--------HHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHhhhccC-Ch--------HHHH
Confidence 56788999999999999999999999999999999999999999999999999999999999888 31 1222
Q ss_pred HHHHH-HHHCCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCC--HHHHHHHHHHHHhC
Q 006120 206 NLGIA-LEGEGMVLSACEYYRESAILCPTHFRALKLLGSALFGVGEYRAAVKALEEAIFIKPDY--ADAHCDLASALHAM 282 (660)
Q Consensus 206 ~la~~-~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~--~~~~~~la~~~~~~ 282 (660)
.++.+ +...+...+|+..++++++.+|+++.+++.+|.++...|++++|+..|+++++.+|+. ..++.++|.++..+
T Consensus 78 ~~~~~~~~~~~~~~~a~~~~~~al~~~P~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~a~~~l~~~~~~~ 157 (176)
T 2r5s_A 78 LIAKLELHQQAAESPELKRLEQELAANPDNFELACELAVQYNQVGRDEEALELLWNILKVNLGAQDGEVKKTFMDILSAL 157 (176)
T ss_dssp HHHHHHHHHHHTSCHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCTTTTTTHHHHHHHHHHHHH
T ss_pred HHHHHHHHhhcccchHHHHHHHHHHhCCCCHHHHHHHHHHHHHcccHHHHHHHHHHHHHhCcccChHHHHHHHHHHHHHh
Confidence 23322 2222334468999999999999999999999999999999999999999999999875 66999999999999
Q ss_pred CChHHHHHHHHHHHH
Q 006120 283 GEDERAIEVFQKAID 297 (660)
Q Consensus 283 g~~~~A~~~~~~al~ 297 (660)
|+.++|+..|++++.
T Consensus 158 g~~~~A~~~y~~al~ 172 (176)
T 2r5s_A 158 GQGNAIASKYRRQLY 172 (176)
T ss_dssp CSSCHHHHHHHHHHH
T ss_pred CCCCcHHHHHHHHHH
Confidence 999999999999875
No 100
>4f3v_A ESX-1 secretion system protein ECCA1; tetratricopeptide repeat, TPR domain, ATPase, protein secret protein transport; 2.00A {Mycobacterium tuberculosis}
Probab=99.66 E-value=7.4e-16 Score=153.24 Aligned_cols=209 Identities=10% Similarity=-0.017 Sum_probs=184.2
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHH-------HHHHHHcCCHHHHHHHHHHHHHHhccCCCchhc
Q 006120 126 DGHMAIGRVLYEHQLFKEALVSFKRACELQPTDVRPHFRA-------GNCLYVLGRYREAKEEYLLALEAAETGGNQWAY 198 (660)
Q Consensus 126 ~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l-------a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~ 198 (660)
..++..|.-+ ..+++.+|...|.++++.+|+.+++|..+ +.++...++..+++..+.+.+.+.|.....+..
T Consensus 8 ~~~~~~~~~~-~~~d~~~A~~~F~~a~~~dP~~~Daw~g~~a~g~~~~~~L~~~~r~~~a~~~~~~~l~l~p~~l~a~~~ 86 (282)
T 4f3v_A 8 ASLFESAVSM-LPMSEARSLDLFTEITNYDESACDAWIGRIRCGDTDRVTLFRAWYSRRNFGQLSGSVQISMSTLNARIA 86 (282)
T ss_dssp HHHHHHHHHH-TTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHTTCCCHHHHHHHHHTGGGTTHHHHTTTCCGGGGCCEEE
T ss_pred HHHHHHHhcc-cCCCHHHHHHHHHHHHHhChhhhHHHHhHHHccCCcHHHHHHHHHHHHHHHHHHHHhcCChhhhhhhhc
Confidence 4556666666 68999999999999999999999999999 899999999999999999999988876443332
Q ss_pred -------------hHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC
Q 006120 199 -------------LLPQIYVNLGIALEGEGMVLSACEYYRESAILCPTHFRALKLLGSALFGVGEYRAAVKALEEAIFIK 265 (660)
Q Consensus 199 -------------~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~ 265 (660)
....+...++.++...|++++|.+.|...+...|++. +.+.+|.++.+.+++++|+..|+++....
T Consensus 87 ~~g~y~~~~~~v~~r~dl~LayA~~L~~~g~y~eA~~~l~~~~~~~p~~~-~~~~~a~l~~~~~r~~dA~~~l~~a~~~~ 165 (282)
T 4f3v_A 87 IGGLYGDITYPVTSPLAITMGFAACEAAQGNYADAMEALEAAPVAGSEHL-VAWMKAVVYGAAERWTDVIDQVKSAGKWP 165 (282)
T ss_dssp CCTTTCCCEEECSSHHHHHHHHHHHHHHHTCHHHHHHHHTSSCCTTCHHH-HHHHHHHHHHHTTCHHHHHHHHTTGGGCS
T ss_pred cCCcccccccccCCHhHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCchH-HHHHHHHHHHHcCCHHHHHHHHHHhhccC
Confidence 1357788899999999999999999999999999888 99999999999999999999999887653
Q ss_pred CCC--HHHHHHHHHHHHhCCChHHHHHHHHHHHHhC--CC-CHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHcccCCh
Q 006120 266 PDY--ADAHCDLASALHAMGEDERAIEVFQKAIDLK--PG-HVDALYNLGGLYMDLGAGETEEAKKALKEALKMTNRV 338 (660)
Q Consensus 266 p~~--~~~~~~la~~~~~~g~~~~A~~~~~~al~~~--p~-~~~a~~~La~~~~~~~~g~~~eA~~~~~~al~l~p~~ 338 (660)
+.. ..+++++|.++..+|++++|+.+|++++.-. |. .+++++++|.++..+ |+.++|...|++++..+|+.
T Consensus 166 d~~~~~~a~~~LG~al~~LG~~~eAl~~l~~a~~g~~~P~~~~da~~~~glaL~~l--Gr~deA~~~l~~a~a~~P~~ 241 (282)
T 4f3v_A 166 DKFLAGAAGVAHGVAAANLALFTEAERRLTEANDSPAGEACARAIAWYLAMARRSQ--GNESAAVALLEWLQTTHPEP 241 (282)
T ss_dssp CHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTSTTTTTTHHHHHHHHHHHHHHH--TCHHHHHHHHHHHHHHSCCH
T ss_pred CcccHHHHHHHHHHHHHHCCCHHHHHHHHHHHhcCCCCccccHHHHHHHHHHHHHc--CCHHHHHHHHHHHHhcCCcH
Confidence 221 4589999999999999999999999998654 55 567999999999999 99999999999999999983
No 101
>1p5q_A FKBP52, FK506-binding protein 4; isomerase; 2.80A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 PDB: 1qz2_A
Probab=99.66 E-value=3.2e-17 Score=170.66 Aligned_cols=183 Identities=17% Similarity=0.162 Sum_probs=158.4
Q ss_pred CHHHHHHHHHH----HHHhCCCCHHHHHHHHHHHH------------HcCCHHHHHHHHHHHHHHhccCCCchhchHHHH
Q 006120 140 LFKEALVSFKR----ACELQPTDVRPHFRAGNCLY------------VLGRYREAKEEYLLALEAAETGGNQWAYLLPQI 203 (660)
Q Consensus 140 ~~~~A~~~~~~----al~~~p~~~~~~~~la~~~~------------~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~ 203 (660)
.+++|+..++. ++.+.|.. ++..+|.... .++++++|+..+++++...|. .+.+
T Consensus 80 ~~e~al~~~~~Ge~~~l~i~p~~--ayg~~g~~~~~i~~~~~l~f~~~L~~~~~A~~~~~~a~~~~p~--------~a~~ 149 (336)
T 1p5q_A 80 GLERAIQRMEKGEHSIVYLKPSY--AFGSVGKEKFQIPPNAELKYELHLKSFEKAKESWEMNSEEKLE--------QSTI 149 (336)
T ss_dssp HHHHHHTTCCTTCEEEEEECTTT--TTTTTCBGGGTBCSSCCEEEEEEEEEEECCCCGGGCCHHHHHH--------HHHH
T ss_pred HHHHHHhcCCCCCeEEEEECCcc--ccCcCCCCccCCCCCCeEEEEEEEeecccccchhcCCHHHHHH--------HHHH
Confidence 45555555555 55555554 3333333321 467788899999999999888 8999
Q ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHhCCCc---------------HHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCC
Q 006120 204 YVNLGIALEGEGMVLSACEYYRESAILCPTH---------------FRALKLLGSALFGVGEYRAAVKALEEAIFIKPDY 268 (660)
Q Consensus 204 ~~~la~~~~~~g~~~~A~~~~~~al~~~p~~---------------~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~ 268 (660)
+..+|.++...|++++|+..|++++.+.|++ ..++.++|.++..+|++++|+..|+++++++|++
T Consensus 150 ~~~~g~~~~~~g~~~~A~~~y~~Al~~~p~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~g~~~~A~~~~~~al~~~p~~ 229 (336)
T 1p5q_A 150 VKERGTVYFKEGKYKQALLQYKKIVSWLEYESSFSNEEAQKAQALRLASHLNLAMCHLKLQAFSAAIESCNKALELDSNN 229 (336)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHHHHHHHTTTCCCCCSHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHHhhccccCChHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCc
Confidence 9999999999999999999999999999998 6999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHhCCChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCCCHHHH-HHHHHHHHcc
Q 006120 269 ADAHCDLASALHAMGEDERAIEVFQKAIDLKPGHVDALYNLGGLYMDLGAGETEEA-KKALKEALKM 334 (660)
Q Consensus 269 ~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~La~~~~~~~~g~~~eA-~~~~~~al~l 334 (660)
+.+++++|.+|..+|++++|+..|+++++++|++..++..++.++..+ |++++| ...|++++..
T Consensus 230 ~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~P~~~~a~~~l~~~~~~~--~~~~~a~~~~~~~~~~~ 294 (336)
T 1p5q_A 230 EKGLSRRGEAHLAVNDFELARADFQKVLQLYPNNKAAKTQLAVCQQRI--RRQLAREKKLYANMFER 294 (336)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSSCHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHH
Confidence 999999999999999999999999999999999999999999999999 999998 5577777653
No 102
>3gyz_A Chaperone protein IPGC; asymmetric homodimer, tetratricopeptide repeat, TPR, chapero virulence; 2.15A {Shigella flexneri} PDB: 3gz1_A 3gz2_A 3ks2_A
Probab=99.66 E-value=4.2e-16 Score=141.97 Aligned_cols=118 Identities=9% Similarity=0.006 Sum_probs=111.9
Q ss_pred HHHHHHHHHHHhccCCCchhchHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHCCCHHHHHHH
Q 006120 178 AKEEYLLALEAAETGGNQWAYLLPQIYVNLGIALEGEGMVLSACEYYRESAILCPTHFRALKLLGSALFGVGEYRAAVKA 257 (660)
Q Consensus 178 A~~~~~~al~~~p~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~ 257 (660)
+-..++++++++|+ .+.+++.+|.++...|++++|+..|++++.++|+++.+|.++|.++...|++++|+..
T Consensus 21 ~~~~l~~al~l~p~--------~~~~~~~lg~~~~~~g~~~eA~~~~~~al~~~P~~~~~~~~lg~~~~~~g~~~~Ai~~ 92 (151)
T 3gyz_A 21 SGATLKDINAIPDD--------MMDDIYSYAYDFYNKGRIEEAEVFFRFLCIYDFYNVDYIMGLAAIYQIKEQFQQAADL 92 (151)
T ss_dssp TSCCTGGGCCSCHH--------HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred CCCCHHHHhCCCHH--------HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHccHHHHHHH
Confidence 44556777788888 8999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHhCCCCHHHHHHHHHHHHhCCChHHHHHHHHHHHHhCCCCH
Q 006120 258 LEEAIFIKPDYADAHCDLASALHAMGEDERAIEVFQKAIDLKPGHV 303 (660)
Q Consensus 258 ~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~ 303 (660)
|++++.++|+++.+|+++|.+|..+|++++|+.+|++++++.|+.+
T Consensus 93 ~~~al~l~P~~~~~~~~lg~~~~~lg~~~eA~~~~~~al~l~~~~~ 138 (151)
T 3gyz_A 93 YAVAFALGKNDYTPVFHTGQCQLRLKAPLKAKECFELVIQHSNDEK 138 (151)
T ss_dssp HHHHHHHSSSCCHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCCHH
T ss_pred HHHHHhhCCCCcHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCHH
Confidence 9999999999999999999999999999999999999999999864
No 103
>3dss_A Geranylgeranyl transferase type-2 subunit alpha; protein prenylation, metal-binding, prenyltransferase, zinc, phosphoprotein; 1.80A {Rattus norvegicus} PDB: 3dst_A* 3dsu_A* 3dsv_A* 3dsw_A* 3dsx_A* 3hxb_A* 3hxc_A* 3hxd_A* 3hxe_A* 3hxf_A* 3pz1_A* 3pz2_A* 3pz3_A* 3c72_A* 4gtv_A* 4gts_A* 4ehm_A* 4gtt_A*
Probab=99.65 E-value=3.7e-14 Score=145.01 Aligned_cols=223 Identities=12% Similarity=0.003 Sum_probs=193.0
Q ss_pred HHHHHHHHHHHhhccCcHHHHHHHHHHHHHHHHcCC----------HHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCC
Q 006120 105 VKELGVLRNRADGARSREEAFDGHMAIGRVLYEHQL----------FKEALVSFKRACELQPTDVRPHFRAGNCLYVLGR 174 (660)
Q Consensus 105 ~~Al~~l~~a~~~~~~~~~~~~~~~~lg~~~~~~g~----------~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~ 174 (660)
++|+....+++...|.. ..+|+..+.++...+. +++++.++..++..+|.+..+|...+.++...++
T Consensus 47 ~eaL~~t~~~L~~nP~~---ytaWn~Rr~iL~~l~~~~~~~~~~~~l~~EL~~~~~~L~~~PKny~aW~hR~wlL~~l~~ 123 (331)
T 3dss_A 47 ESVLELTSQILGANPDF---ATLWNCRREVLQHLETEKSPEESAALVKAELGFLESCLRVNPKSYGTWHHRCWLLSRLPE 123 (331)
T ss_dssp HHHHHHHHHHHTTCTTC---HHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHCSS
T ss_pred HHHHHHHHHHHHHCchh---HHHHHHHHHHHHHhcccccchhhhHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHhccCc
Confidence 36888888888877766 4888888888877765 7899999999999999999999999999999994
Q ss_pred --HHHHHHHHHHHHHHhccCCCchhchHHHHHHHHHHHHHHCCC-HHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHC---
Q 006120 175 --YREAKEEYLLALEAAETGGNQWAYLLPQIYVNLGIALEGEGM-VLSACEYYRESAILCPTHFRALKLLGSALFGV--- 248 (660)
Q Consensus 175 --~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~la~~~~~~g~-~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~--- 248 (660)
+++++.++.++++.+|. +..+|...+.++...|. ++++++++.++++.+|.+..+|..++.++...
T Consensus 124 ~~~~~EL~~~~k~l~~dpr--------Ny~AW~~R~~vl~~l~~~~~eel~~~~~~I~~~p~N~SAW~~R~~ll~~l~~~ 195 (331)
T 3dss_A 124 PNWARELELCARFLEADER--------NFHCWDYRRFVAAQAAVAPAEELAFTDSLITRNFSNYSSWHYRSCLLPQLHPQ 195 (331)
T ss_dssp CCHHHHHHHHHHHHHHCTT--------CHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHHSCC
T ss_pred ccHHHHHHHHHHHHHhCCC--------CHHHHHHHHHHHHHhCcCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHhhhc
Confidence 89999999999999999 78899999999999998 69999999999999999999999999999877
Q ss_pred -----------CCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhC-----------CChHHHHHHHHHHHHhCCCCHHHH
Q 006120 249 -----------GEYRAAVKALEEAIFIKPDYADAHCDLASALHAM-----------GEDERAIEVFQKAIDLKPGHVDAL 306 (660)
Q Consensus 249 -----------g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~-----------g~~~~A~~~~~~al~~~p~~~~a~ 306 (660)
+.++++++++.+++..+|++..+|+.+..++... +.++++++++++++++.|++.-++
T Consensus 196 ~~~~~~~~~~~~~~~eEle~~~~ai~~~P~d~SaW~Y~r~ll~~~~~~~~~~~~~~~~l~~el~~~~elle~~pd~~w~l 275 (331)
T 3dss_A 196 PDSGPQGRLPENVLLKELELVQNAFFTDPNDQSAWFYHRWLLGAGSGRCELSVEKSTVLQSELESCKELQELEPENKWCL 275 (331)
T ss_dssp C------CCCHHHHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHSSSCGGGCCHHHHHHHHHHHHHHHHHHHHCTTCHHHH
T ss_pred cccccccccchHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhccCccccchHHHHHHHHHHHHHHHHHhhCcccchHH
Confidence 5689999999999999999999998776666655 458999999999999999996555
Q ss_pred HHHHHHHHHh-cCCCHHHHHHHHHHHHcccCCh
Q 006120 307 YNLGGLYMDL-GAGETEEAKKALKEALKMTNRV 338 (660)
Q Consensus 307 ~~La~~~~~~-~~g~~~eA~~~~~~al~l~p~~ 338 (660)
..++.+...+ ..|..++...++.+.++++|..
T Consensus 276 ~~~~~~~~~~~~~~~~~~~~~~l~~l~~~Dp~r 308 (331)
T 3dss_A 276 LTIILLMRALDPLLYEKETLQYFSTLKAVDPMR 308 (331)
T ss_dssp HHHHHHHHHHCTTTTHHHHHHHHHHHHHHCGGG
T ss_pred HHHHHHHHhhcccccHHHHHHHHHHHHHhCcch
Confidence 4444433221 1378889999999999999973
No 104
>3rjv_A Putative SEL1 repeat protein; alpha-alpha superhelix, structural genomics, joint center FO structural genomics, JCSG; HET: MSE; 1.65A {Klebsiella pneumoniae subsp}
Probab=99.64 E-value=4.9e-15 Score=143.37 Aligned_cols=179 Identities=16% Similarity=0.063 Sum_probs=143.3
Q ss_pred HHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhccCCCchhchHHHHHHHHHHHHHHCC----CH
Q 006120 142 KEALVSFKRACELQPTDVRPHFRAGNCLYVLGRYREAKEEYLLALEAAETGGNQWAYLLPQIYVNLGIALEGEG----MV 217 (660)
Q Consensus 142 ~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~la~~~~~~g----~~ 217 (660)
.+|+.+|+++.+. .++.+++.+|.+|...+++++|+.+|+++++.. .+.+++++|.+|.. + ++
T Consensus 3 ~eA~~~~~~aa~~--g~~~a~~~lg~~~~~~~~~~~A~~~~~~a~~~g----------~~~a~~~lg~~y~~-~g~~~~~ 69 (212)
T 3rjv_A 3 TEPGSQYQQQAEA--GDRRAQYYLADTWVSSGDYQKAEYWAQKAAAQG----------DGDALALLAQLKIR-NPQQADY 69 (212)
T ss_dssp -CTTHHHHHHHHT--TCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTT----------CHHHHHHHHHHTTS-STTSCCH
T ss_pred chHHHHHHHHHHC--CCHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcC----------CHHHHHHHHHHHHc-CCCCCCH
Confidence 3577788888775 678888888888888888888888888887653 45778888888887 6 88
Q ss_pred HHHHHHHHHHHHhCCCcHHHHHHHHHHHHH----CCCHHHHHHHHHHHHHhCC--CCHHHHHHHHHHHHh----CCChHH
Q 006120 218 LSACEYYRESAILCPTHFRALKLLGSALFG----VGEYRAAVKALEEAIFIKP--DYADAHCDLASALHA----MGEDER 287 (660)
Q Consensus 218 ~~A~~~~~~al~~~p~~~~~~~~lg~~~~~----~g~~~~A~~~~~~al~~~p--~~~~~~~~la~~~~~----~g~~~~ 287 (660)
++|+.+|+++.+ +.++.++++||.+|.. .+++++|+.+|+++++..+ +++.++++||.+|.. .+++++
T Consensus 70 ~~A~~~~~~A~~--~g~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~A~~~~~~~~~~~a~~~Lg~~y~~g~g~~~d~~~ 147 (212)
T 3rjv_A 70 PQARQLAEKAVE--AGSKSGEIVLARVLVNRQAGATDVAHAITLLQDAARDSESDAAVDAQMLLGLIYASGVHGPEDDVK 147 (212)
T ss_dssp HHHHHHHHHHHH--TTCHHHHHHHHHHHTCGGGSSCCHHHHHHHHHHHTSSTTSHHHHHHHHHHHHHHHHTSSSSCCHHH
T ss_pred HHHHHHHHHHHH--CCCHHHHHHHHHHHHcCCCCccCHHHHHHHHHHHHHcCCCcchHHHHHHHHHHHHcCCCCCCCHHH
Confidence 888888888854 5678888888888887 7888888888888888877 348888888888888 788888
Q ss_pred HHHHHHHHHHhCCCCHHHHHHHHHHHHHhc----CCCHHHHHHHHHHHHcccC
Q 006120 288 AIEVFQKAIDLKPGHVDALYNLGGLYMDLG----AGETEEAKKALKEALKMTN 336 (660)
Q Consensus 288 A~~~~~~al~~~p~~~~a~~~La~~~~~~~----~g~~~eA~~~~~~al~l~p 336 (660)
|+.+|+++++. |.++.++++||.+|.... ..++++|+.+|+++.+..+
T Consensus 148 A~~~~~~A~~~-~~~~~a~~~Lg~~y~~g~gg~~~~d~~~A~~~~~~A~~~g~ 199 (212)
T 3rjv_A 148 ASEYFKGSSSL-SRTGYAEYWAGMMFQQGEKGFIEPNKQKALHWLNVSCLEGF 199 (212)
T ss_dssp HHHHHHHHHHT-SCTTHHHHHHHHHHHHCBTTTBCCCHHHHHHHHHHHHHHTC
T ss_pred HHHHHHHHHHc-CCCHHHHHHHHHHHHcCCCCCCCCCHHHHHHHHHHHHHcCC
Confidence 88888888887 666778888888887631 1288889998888888753
No 105
>3dra_A Protein farnesyltransferase/geranylgeranyltransferase type-1 subunit alpha; geranylgeranyltrasferase, ggtase, ggtase-I, PGGT, prenyltransferase, farnesyltransferase; HET: B3P GRG; 1.80A {Candida albicans}
Probab=99.63 E-value=4.3e-14 Score=143.70 Aligned_cols=191 Identities=9% Similarity=-0.035 Sum_probs=174.4
Q ss_pred HHHcCCH-HHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcC--CHHHHHHHHHHHHHHhccCCCchhchHHHHHHHHHHHH
Q 006120 135 LYEHQLF-KEALVSFKRACELQPTDVRPHFRAGNCLYVLG--RYREAKEEYLLALEAAETGGNQWAYLLPQIYVNLGIAL 211 (660)
Q Consensus 135 ~~~~g~~-~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g--~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~la~~~ 211 (660)
....|.+ ++|+.++.+++.++|++..+|+..+.++..++ ++++++..+.+++..+|+ ...+|...+.++
T Consensus 42 ~~~~~e~s~~aL~~t~~~L~~nP~~~taWn~R~~~L~~l~~~~~~eeL~~~~~~L~~nPk--------~y~aW~~R~~iL 113 (306)
T 3dra_A 42 LMKAEEYSERALHITELGINELASHYTIWIYRFNILKNLPNRNLYDELDWCEEIALDNEK--------NYQIWNYRQLII 113 (306)
T ss_dssp HHHTTCCSHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTCTTSCHHHHHHHHHHHHHHCTT--------CCHHHHHHHHHH
T ss_pred HHHcCCCCHHHHHHHHHHHHHCcHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHCcc--------cHHHHHHHHHHH
Confidence 3344444 68999999999999999999999999999999 999999999999999999 667777788777
Q ss_pred ----HHC---CCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHCCCHH--HHHHHHHHHHHhCCCCHHHHHHHHHHHHhC
Q 006120 212 ----EGE---GMVLSACEYYRESAILCPTHFRALKLLGSALFGVGEYR--AAVKALEEAIFIKPDYADAHCDLASALHAM 282 (660)
Q Consensus 212 ----~~~---g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~--~A~~~~~~al~~~p~~~~~~~~la~~~~~~ 282 (660)
... +++++++..+.++++.+|.+..+|...+.++...|.++ ++++++.++++.+|.+..+|...+.++...
T Consensus 114 ~~~~~~l~~~~~~~~EL~~~~~~l~~~pkny~aW~~R~~vl~~l~~~~~~~EL~~~~~~i~~d~~N~sAW~~R~~ll~~l 193 (306)
T 3dra_A 114 GQIMELNNNDFDPYREFDILEAMLSSDPKNHHVWSYRKWLVDTFDLHNDAKELSFVDKVIDTDLKNNSAWSHRFFLLFSK 193 (306)
T ss_dssp HHHHHHTTTCCCTHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHSS
T ss_pred HHHHHhccccCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcccChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhc
Confidence 666 89999999999999999999999999999999999998 999999999999999999999999999999
Q ss_pred CC------hHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCCCH-HHHHHHHHHHHccc
Q 006120 283 GE------DERAIEVFQKAIDLKPGHVDALYNLGGLYMDLGAGET-EEAKKALKEALKMT 335 (660)
Q Consensus 283 g~------~~~A~~~~~~al~~~p~~~~a~~~La~~~~~~~~g~~-~eA~~~~~~al~l~ 335 (660)
++ ++++++++++++..+|++..+|..++.++... |+. ++...++++++.++
T Consensus 194 ~~~~~~~~~~eEl~~~~~aI~~~p~n~SaW~y~~~ll~~~--~~~~~~~~~~~~~~~~~~ 251 (306)
T 3dra_A 194 KHLATDNTIDEELNYVKDKIVKCPQNPSTWNYLLGIHERF--DRSITQLEEFSLQFVDLE 251 (306)
T ss_dssp GGGCCHHHHHHHHHHHHHHHHHCSSCHHHHHHHHHHHHHT--TCCGGGGHHHHHTTEEGG
T ss_pred cccchhhhHHHHHHHHHHHHHhCCCCccHHHHHHHHHHhc--CCChHHHHHHHHHHHhcc
Confidence 88 99999999999999999999999999999998 664 44666888888775
No 106
>2vsy_A XCC0866; transferase, glycosyl transferase, GT-B, OGT, protein O-GLCN; HET: NHE; 2.10A {Xanthomonas campestris PV} PDB: 2jlb_A* 2xgm_A* 2xgo_A* 2xgs_A* 2vsn_A*
Probab=99.62 E-value=1.5e-14 Score=161.78 Aligned_cols=165 Identities=19% Similarity=0.084 Sum_probs=140.6
Q ss_pred HHHHHHHHHHHHHHHhhccCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHH
Q 006120 101 YAVFVKELGVLRNRADGARSREEAFDGHMAIGRVLYEHQLFKEALVSFKRACELQPTDVRPHFRAGNCLYVLGRYREAKE 180 (660)
Q Consensus 101 ~g~~~~Al~~l~~a~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~ 180 (660)
.|++++|+..++++++..+... .+++.+|.++...|++++|+..|+++++.+|++..++..+|.++..+|++++|+.
T Consensus 2 ~g~~~~A~~~~~~al~~~p~~~---~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~ 78 (568)
T 2vsy_A 2 TADGPRELLQLRAAVRHRPQDF---VAWLMLADAELGMGDTTAGEMAVQRGLALHPGHPEAVARLGRVRWTQQRHAEAAV 78 (568)
T ss_dssp -------------------CCH---HHHHHHHHHHHHHTCHHHHHHHHHHHHTTSTTCHHHHHHHHHHHHHTTCHHHHHH
T ss_pred CccHHHHHHHHHHHHHhCCCCH---HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHH
Confidence 3678999999999998777654 7899999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHhccCCCchhchHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHC---CCHHHHHHH
Q 006120 181 EYLLALEAAETGGNQWAYLLPQIYVNLGIALEGEGMVLSACEYYRESAILCPTHFRALKLLGSALFGV---GEYRAAVKA 257 (660)
Q Consensus 181 ~~~~al~~~p~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~---g~~~~A~~~ 257 (660)
.++++++++|+ ...++.++|.++...|++++|+.+++++++++|++..++.++|.++... |++++|+..
T Consensus 79 ~~~~al~~~p~--------~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~g~~~~A~~~ 150 (568)
T 2vsy_A 79 LLQQASDAAPE--------HPGIALWLGHALEDAGQAEAAAAAYTRAHQLLPEEPYITAQLLNWRRRLCDWRALDVLSAQ 150 (568)
T ss_dssp HHHHHHHHCTT--------CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCCTTHHHHHHH
T ss_pred HHHHHHhcCCC--------CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhhccccHHHHHHH
Confidence 99999999998 7889999999999999999999999999999999999999999999999 999999999
Q ss_pred HHHHHHhCCCCHHHHHHHH
Q 006120 258 LEEAIFIKPDYADAHCDLA 276 (660)
Q Consensus 258 ~~~al~~~p~~~~~~~~la 276 (660)
++++++.+|.+...+..++
T Consensus 151 ~~~al~~~p~~~~~~~~l~ 169 (568)
T 2vsy_A 151 VRAAVAQGVGAVEPFAFLS 169 (568)
T ss_dssp HHHHHHHTCCCSCHHHHTT
T ss_pred HHHHHhcCCcccChHHHhC
Confidence 9999999999988887776
No 107
>3rjv_A Putative SEL1 repeat protein; alpha-alpha superhelix, structural genomics, joint center FO structural genomics, JCSG; HET: MSE; 1.65A {Klebsiella pneumoniae subsp}
Probab=99.61 E-value=3.8e-14 Score=137.06 Aligned_cols=186 Identities=11% Similarity=-0.006 Sum_probs=161.5
Q ss_pred HHHHHHHHHHhhccCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcC----CHHHHHHH
Q 006120 106 KELGVLRNRADGARSREEAFDGHMAIGRVLYEHQLFKEALVSFKRACELQPTDVRPHFRAGNCLYVLG----RYREAKEE 181 (660)
Q Consensus 106 ~Al~~l~~a~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g----~~~~A~~~ 181 (660)
+|+..++++.+. .+ ..+++.+|.++...+++++|+.+|+++++. +++.+++.+|.+|.. + ++++|+.+
T Consensus 4 eA~~~~~~aa~~--g~---~~a~~~lg~~~~~~~~~~~A~~~~~~a~~~--g~~~a~~~lg~~y~~-~g~~~~~~~A~~~ 75 (212)
T 3rjv_A 4 EPGSQYQQQAEA--GD---RRAQYYLADTWVSSGDYQKAEYWAQKAAAQ--GDGDALALLAQLKIR-NPQQADYPQARQL 75 (212)
T ss_dssp CTTHHHHHHHHT--TC---HHHHHHHHHHHHHHTCHHHHHHHHHHHHHT--TCHHHHHHHHHHTTS-STTSCCHHHHHHH
T ss_pred hHHHHHHHHHHC--CC---HHHHHHHHHHHhcCCCHHHHHHHHHHHHHc--CCHHHHHHHHHHHHc-CCCCCCHHHHHHH
Confidence 466777777764 22 478999999999999999999999999875 589999999999998 7 99999999
Q ss_pred HHHHHHHhccCCCchhchHHHHHHHHHHHHHH----CCCHHHHHHHHHHHHHhCC--CcHHHHHHHHHHHHH----CCCH
Q 006120 182 YLLALEAAETGGNQWAYLLPQIYVNLGIALEG----EGMVLSACEYYRESAILCP--THFRALKLLGSALFG----VGEY 251 (660)
Q Consensus 182 ~~~al~~~p~~~~~~~~~~~~~~~~la~~~~~----~g~~~~A~~~~~~al~~~p--~~~~~~~~lg~~~~~----~g~~ 251 (660)
|+++.+. . .+.+++++|.++.. .+++++|+.+|+++++..+ .++.++++||.+|.. .+++
T Consensus 76 ~~~A~~~--g--------~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~A~~~~~~~~~~~a~~~Lg~~y~~g~g~~~d~ 145 (212)
T 3rjv_A 76 AEKAVEA--G--------SKSGEIVLARVLVNRQAGATDVAHAITLLQDAARDSESDAAVDAQMLLGLIYASGVHGPEDD 145 (212)
T ss_dssp HHHHHHT--T--------CHHHHHHHHHHHTCGGGSSCCHHHHHHHHHHHTSSTTSHHHHHHHHHHHHHHHHTSSSSCCH
T ss_pred HHHHHHC--C--------CHHHHHHHHHHHHcCCCCccCHHHHHHHHHHHHHcCCCcchHHHHHHHHHHHHcCCCCCCCH
Confidence 9999764 3 57899999999998 8999999999999999988 459999999999999 8999
Q ss_pred HHHHHHHHHHHHhCCCCHHHHHHHHHHHHhC-C-----ChHHHHHHHHHHHHhCCCCHHHHHHHHHH
Q 006120 252 RAAVKALEEAIFIKPDYADAHCDLASALHAM-G-----EDERAIEVFQKAIDLKPGHVDALYNLGGL 312 (660)
Q Consensus 252 ~~A~~~~~~al~~~p~~~~~~~~la~~~~~~-g-----~~~~A~~~~~~al~~~p~~~~a~~~La~~ 312 (660)
++|+.+|+++++. +.++.++++||.+|... | ++++|+.+|+++.+.. +..+...++.+
T Consensus 146 ~~A~~~~~~A~~~-~~~~~a~~~Lg~~y~~g~gg~~~~d~~~A~~~~~~A~~~g--~~~A~~~l~~l 209 (212)
T 3rjv_A 146 VKASEYFKGSSSL-SRTGYAEYWAGMMFQQGEKGFIEPNKQKALHWLNVSCLEG--FDTGCEEFDRI 209 (212)
T ss_dssp HHHHHHHHHHHHT-SCTTHHHHHHHHHHHHCBTTTBCCCHHHHHHHHHHHHHHT--CHHHHHHHHHH
T ss_pred HHHHHHHHHHHHc-CCCHHHHHHHHHHHHcCCCCCCCCCHHHHHHHHHHHHHcC--CHHHHHHHHHh
Confidence 9999999999998 67788999999999864 3 8999999999999885 45555555543
No 108
>3q7a_A Farnesyltransferase alpha subunit; protein prenyltransferase, transferase-transferase inhibitor; HET: SUC 3FX FPP 778; 2.00A {Cryptococcus neoformans} PDB: 3q73_A* 3q78_A* 3q79_A* 3q75_A* 3q7f_A* 3sfx_A* 3sfy_A*
Probab=99.61 E-value=4.3e-14 Score=145.07 Aligned_cols=242 Identities=10% Similarity=-0.069 Sum_probs=204.2
Q ss_pred CchHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHhhccCcHHHHHHHHHHHHHHHHcC-CHHHHHHHHHHHHHhCCCCHHH
Q 006120 83 TSAEISEKRVFWEESTHDYAVFVKELGVLRNRADGARSREEAFDGHMAIGRVLYEHQ-LFKEALVSFKRACELQPTDVRP 161 (660)
Q Consensus 83 ~~~~~~~~~~~l~~~~~~~g~~~~Al~~l~~a~~~~~~~~~~~~~~~~lg~~~~~~g-~~~~A~~~~~~al~~~p~~~~~ 161 (660)
..++-..+..++..+....+..++|+..+.+++...+... .+|+..+.++...| .+++++.++.+++..+|++..+
T Consensus 49 y~~~y~~~~~~~r~~~~~~e~se~AL~lt~~~L~~nP~~y---taWn~R~~iL~~l~~~l~eEL~~~~~~L~~nPKny~a 125 (349)
T 3q7a_A 49 YSEEYKDAMDYFRAIAAKEEKSERALELTEIIVRMNPAHY---TVWQYRFSLLTSLNKSLEDELRLMNEFAVQNLKSYQV 125 (349)
T ss_dssp CCHHHHHHHHHHHHHHHTTCCSHHHHHHHHHHHHHCTTCH---HHHHHHHHHHHHTTCCHHHHHHHHHHHHHTTCCCHHH
T ss_pred eCHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhCchhH---HHHHHHHHHHHHhhhhHHHHHHHHHHHHHhCCCcHHH
Confidence 3444455555555566666667889999999999888774 88999999999999 5999999999999999999999
Q ss_pred HHHHHHHHHHc-C-CHHHHHHHHHHHHHHhccCCCchhchHHHHHHHHHHHHHHCCCHH--------HHHHHHHHHHHhC
Q 006120 162 HFRAGNCLYVL-G-RYREAKEEYLLALEAAETGGNQWAYLLPQIYVNLGIALEGEGMVL--------SACEYYRESAILC 231 (660)
Q Consensus 162 ~~~la~~~~~~-g-~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~la~~~~~~g~~~--------~A~~~~~~al~~~ 231 (660)
|+..+.++... + +++++++.+.++++.+|. +..+|...+.++...|.++ ++++++.++++.+
T Consensus 126 W~hR~wlL~~l~~~~~~~EL~~~~k~L~~dpk--------Ny~AW~~R~wvl~~l~~~~~~~~~~~~eELe~~~k~I~~d 197 (349)
T 3q7a_A 126 WHHRLLLLDRISPQDPVSEIEYIHGSLLPDPK--------NYHTWAYLHWLYSHFSTLGRISEAQWGSELDWCNEMLRVD 197 (349)
T ss_dssp HHHHHHHHHHHCCSCCHHHHHHHHHHTSSCTT--------CHHHHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHhcCCChHHHHHHHHHHHHhCCC--------CHHHHHHHHHHHHHhccccccchhhHHHHHHHHHHHHHhC
Confidence 99999999998 8 999999999999999998 7788888888888888877 9999999999999
Q ss_pred CCcHHHHHHHHHHHHHCCC-------HHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhCCCh-------------------
Q 006120 232 PTHFRALKLLGSALFGVGE-------YRAAVKALEEAIFIKPDYADAHCDLASALHAMGED------------------- 285 (660)
Q Consensus 232 p~~~~~~~~lg~~~~~~g~-------~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~------------------- 285 (660)
|.+..+|...+.++...++ ++++++++.+++.++|++..+|+.+..++...|+.
T Consensus 198 p~N~SAW~~R~~lL~~l~~~~~~~~~~~eELe~~~~aI~~~P~n~SaW~Ylr~Ll~~~~~~~~~~~~~~~~~~~~~~~~~ 277 (349)
T 3q7a_A 198 GRNNSAWGWRWYLRVSRPGAETSSRSLQDELIYILKSIHLIPHNVSAWNYLRGFLKHFSLPLVPILPAILPYTASKLNPD 277 (349)
T ss_dssp TTCHHHHHHHHHHHTTSTTCCCCHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCCSGGGHHHHGGGTC------
T ss_pred CCCHHHHHHHHHHHHhccccccchHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCCCccccccccccccccccccc
Confidence 9999999999999999987 79999999999999999999999999999887765
Q ss_pred -HHHHHHHHHHHHhC------CCCHHHHHHHHHHHHHhcCCCHHHHHHHHHHHH-cccCC
Q 006120 286 -ERAIEVFQKAIDLK------PGHVDALYNLGGLYMDLGAGETEEAKKALKEAL-KMTNR 337 (660)
Q Consensus 286 -~~A~~~~~~al~~~------p~~~~a~~~La~~~~~~~~g~~~eA~~~~~~al-~l~p~ 337 (660)
.+-.......+... +..+.++..|+.+|.+. |+.++|.+.++... +.+|-
T Consensus 278 ~~~~~~~~~~~~~~~~~~~~~~~s~~al~~l~d~~~~~--~~~~~a~~~~~~l~~~~dpi 335 (349)
T 3q7a_A 278 IETVEAFGFPMPSDPLPEDTPLPVPLALEYLADSFIEQ--NRVDDAAKVFEKLSSEYDQM 335 (349)
T ss_dssp --------CCCCC-CCCSSCCSCCHHHHHHHHHHHHHT--TCHHHHHHHHHHHHHTTCGG
T ss_pred chhHHHHHHHHHhcccccccCCCcHHHHHHHHHHHHhc--CCHHHHHHHHHHHHhhhChH
Confidence 22222222222222 46788999999999998 99999999999986 55664
No 109
>2vgx_A Chaperone SYCD; alternative dimer assembly, tetratricopeptide repeat, type III secretion; HET: MLY; 1.95A {Yersinia enterocolitica} SCOP: k.38.1.1 PDB: 2vgx_B* 2vgy_A*
Probab=99.60 E-value=5.9e-15 Score=134.09 Aligned_cols=113 Identities=15% Similarity=0.150 Sum_probs=67.1
Q ss_pred HHHHHHHhCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhCCChHHHHHHHHHHHHhCCCC
Q 006120 223 YYRESAILCPTHFRALKLLGSALFGVGEYRAAVKALEEAIFIKPDYADAHCDLASALHAMGEDERAIEVFQKAIDLKPGH 302 (660)
Q Consensus 223 ~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~ 302 (660)
.|++++.++|++..+++.+|.++...|++++|+..|++++.++|+++.+|.++|.++..+|++++|+..|++++.++|++
T Consensus 9 ~~~~al~~~p~~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~ 88 (148)
T 2vgx_A 9 TIAMLNEISSDTLEQLYSLAFNQYQSGXYEDAHXVFQALCVLDHYDSRFFLGLGACRQAMGQYDLAIHSYSYGAVMDIXE 88 (148)
T ss_dssp SHHHHTTCCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTC
T ss_pred hHHHHHcCCHhhHHHHHHHHHHHHHcCChHHHHHHHHHHHHcCcccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCCC
Confidence 45555555555555555566666666666666666666666666556666666666666666666666666666666655
Q ss_pred HHHHHHHHHHHHHhcCCCHHHHHHHHHHHHcccCC
Q 006120 303 VDALYNLGGLYMDLGAGETEEAKKALKEALKMTNR 337 (660)
Q Consensus 303 ~~a~~~La~~~~~~~~g~~~eA~~~~~~al~l~p~ 337 (660)
+.+++++|.++..+ |++++|+..|++++++.|.
T Consensus 89 ~~~~~~lg~~~~~~--g~~~~A~~~~~~al~~~p~ 121 (148)
T 2vgx_A 89 PRFPFHAAECLLQX--GELAEAESGLFLAQELIAN 121 (148)
T ss_dssp THHHHHHHHHHHHT--TCHHHHHHHHHHHHHHHTT
T ss_pred chHHHHHHHHHHHc--CCHHHHHHHHHHHHHHCcC
Confidence 55666666666555 5666666666666655554
No 110
>3dss_A Geranylgeranyl transferase type-2 subunit alpha; protein prenylation, metal-binding, prenyltransferase, zinc, phosphoprotein; 1.80A {Rattus norvegicus} PDB: 3dst_A* 3dsu_A* 3dsv_A* 3dsw_A* 3dsx_A* 3hxb_A* 3hxc_A* 3hxd_A* 3hxe_A* 3hxf_A* 3pz1_A* 3pz2_A* 3pz3_A* 3c72_A* 4gtv_A* 4gts_A* 4ehm_A* 4gtt_A*
Probab=99.60 E-value=1.5e-13 Score=140.56 Aligned_cols=195 Identities=10% Similarity=-0.065 Sum_probs=176.7
Q ss_pred HHcCCHH-HHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCC----------HHHHHHHHHHHHHHhccCCCchhchHHHHH
Q 006120 136 YEHQLFK-EALVSFKRACELQPTDVRPHFRAGNCLYVLGR----------YREAKEEYLLALEAAETGGNQWAYLLPQIY 204 (660)
Q Consensus 136 ~~~g~~~-~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~----------~~~A~~~~~~al~~~p~~~~~~~~~~~~~~ 204 (660)
...|.+. +|+.++.+++.++|++..+|+..+.++...+. +++++..+..++..+|. ...+|
T Consensus 40 ~~~~e~s~eaL~~t~~~L~~nP~~ytaWn~Rr~iL~~l~~~~~~~~~~~~l~~EL~~~~~~L~~~PK--------ny~aW 111 (331)
T 3dss_A 40 RQAGELDESVLELTSQILGANPDFATLWNCRREVLQHLETEKSPEESAALVKAELGFLESCLRVNPK--------SYGTW 111 (331)
T ss_dssp HHTTCCSHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHCTT--------CHHHH
T ss_pred HHcCCCCHHHHHHHHHHHHHCchhHHHHHHHHHHHHHhcccccchhhhHHHHHHHHHHHHHHHhCCC--------CHHHH
Confidence 3456555 79999999999999999999999999988776 68999999999999999 78999
Q ss_pred HHHHHHHHHCCC--HHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHCCC-HHHHHHHHHHHHHhCCCCHHHHHHHHHHHHh
Q 006120 205 VNLGIALEGEGM--VLSACEYYRESAILCPTHFRALKLLGSALFGVGE-YRAAVKALEEAIFIKPDYADAHCDLASALHA 281 (660)
Q Consensus 205 ~~la~~~~~~g~--~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~-~~~A~~~~~~al~~~p~~~~~~~~la~~~~~ 281 (660)
...+.++...++ +++++.++.++++.+|.+..+|...+.++...|. ++++++++.++++.+|.+..+|.+++.++..
T Consensus 112 ~hR~wlL~~l~~~~~~~EL~~~~k~l~~dprNy~AW~~R~~vl~~l~~~~~eel~~~~~~I~~~p~N~SAW~~R~~ll~~ 191 (331)
T 3dss_A 112 HHRCWLLSRLPEPNWARELELCARFLEADERNFHCWDYRRFVAAQAAVAPAEELAFTDSLITRNFSNYSSWHYRSCLLPQ 191 (331)
T ss_dssp HHHHHHHHHCSSCCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHH
T ss_pred HHHHHHHhccCcccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhCcCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHH
Confidence 999999999994 9999999999999999999999999999999999 6999999999999999999999999999987
Q ss_pred C--------------CChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCC----------CHHHHHHHHHHHHcccCC
Q 006120 282 M--------------GEDERAIEVFQKAIDLKPGHVDALYNLGGLYMDLGAG----------ETEEAKKALKEALKMTNR 337 (660)
Q Consensus 282 ~--------------g~~~~A~~~~~~al~~~p~~~~a~~~La~~~~~~~~g----------~~~eA~~~~~~al~l~p~ 337 (660)
. +.++++++++.+++..+|++..+|+.+..++.... | .++++++.+++++++.|+
T Consensus 192 l~~~~~~~~~~~~~~~~~~eEle~~~~ai~~~P~d~SaW~Y~r~ll~~~~-~~~~~~~~~~~~l~~el~~~~elle~~pd 270 (331)
T 3dss_A 192 LHPQPDSGPQGRLPENVLLKELELVQNAFFTDPNDQSAWFYHRWLLGAGS-GRCELSVEKSTVLQSELESCKELQELEPE 270 (331)
T ss_dssp HSCCC------CCCHHHHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHSSS-CGGGCCHHHHHHHHHHHHHHHHHHHHCTT
T ss_pred hhhccccccccccchHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcc-CccccchHHHHHHHHHHHHHHHHHhhCcc
Confidence 7 56899999999999999999999987766665431 3 478999999999999998
Q ss_pred hh
Q 006120 338 VE 339 (660)
Q Consensus 338 ~~ 339 (660)
..
T Consensus 271 ~~ 272 (331)
T 3dss_A 271 NK 272 (331)
T ss_dssp CH
T ss_pred cc
Confidence 63
No 111
>2fo7_A Synthetic consensus TPR protein; tetratricopeptide repeat, consensus protein, superhelix, de novo protein; 2.30A {Synthetic} SCOP: k.38.1.1 PDB: 2hyz_A
Probab=99.60 E-value=5.7e-14 Score=123.26 Aligned_cols=134 Identities=34% Similarity=0.527 Sum_probs=129.4
Q ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHh
Q 006120 202 QIYVNLGIALEGEGMVLSACEYYRESAILCPTHFRALKLLGSALFGVGEYRAAVKALEEAIFIKPDYADAHCDLASALHA 281 (660)
Q Consensus 202 ~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~ 281 (660)
.+++.+|.++...|++++|+..+++++...|.+..++..+|.++...|++++|+..+++++...|.+..++..+|.++..
T Consensus 2 ~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~ 81 (136)
T 2fo7_A 2 EAWYNLGNAYYKQGDYDEAIEYYQKALELDPRSAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPRSAEAWYNLGNAYYK 81 (136)
T ss_dssp HHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHT
T ss_pred cHHHHHHHHHHHcCcHHHHHHHHHHHHHcCCcchhHHHHHHHHHHHhcCHHHHHHHHHHHHHHCCCchHHHHHHHHHHHH
Confidence 46788999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHcccCC
Q 006120 282 MGEDERAIEVFQKAIDLKPGHVDALYNLGGLYMDLGAGETEEAKKALKEALKMTNR 337 (660)
Q Consensus 282 ~g~~~~A~~~~~~al~~~p~~~~a~~~La~~~~~~~~g~~~eA~~~~~~al~l~p~ 337 (660)
.|++++|+..+++++...|.+..++..+|.++... |++++|..++++++.++|.
T Consensus 82 ~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~--~~~~~A~~~~~~~~~~~~~ 135 (136)
T 2fo7_A 82 QGDYDEAIEYYQKALELDPRSAEAWYNLGNAYYKQ--GDYDEAIEYYQKALELDPR 135 (136)
T ss_dssp TTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTT--TCHHHHHHHHHHHHHHSTT
T ss_pred hcCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHH--ccHHHHHHHHHHHHccCCC
Confidence 99999999999999999999999999999999998 9999999999999998875
No 112
>2vgx_A Chaperone SYCD; alternative dimer assembly, tetratricopeptide repeat, type III secretion; HET: MLY; 1.95A {Yersinia enterocolitica} SCOP: k.38.1.1 PDB: 2vgx_B* 2vgy_A*
Probab=99.60 E-value=7.2e-15 Score=133.52 Aligned_cols=108 Identities=16% Similarity=0.078 Sum_probs=103.5
Q ss_pred HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHH
Q 006120 200 LPQIYVNLGIALEGEGMVLSACEYYRESAILCPTHFRALKLLGSALFGVGEYRAAVKALEEAIFIKPDYADAHCDLASAL 279 (660)
Q Consensus 200 ~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~ 279 (660)
...+++.+|.++...|++++|+..|++++..+|+++.+|..+|.++...|++++|+..|++++.++|+++.+++++|.++
T Consensus 20 ~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~lg~~~ 99 (148)
T 2vgx_A 20 TLEQLYSLAFNQYQSGXYEDAHXVFQALCVLDHYDSRFFLGLGACRQAMGQYDLAIHSYSYGAVMDIXEPRFPFHAAECL 99 (148)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCTHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHcCChHHHHHHHHHHHHcCcccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCCCchHHHHHHHHH
Confidence 67889999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HhCCChHHHHHHHHHHHHhCCCCHHHHH
Q 006120 280 HAMGEDERAIEVFQKAIDLKPGHVDALY 307 (660)
Q Consensus 280 ~~~g~~~~A~~~~~~al~~~p~~~~a~~ 307 (660)
..+|++++|+..|+++++++|+++....
T Consensus 100 ~~~g~~~~A~~~~~~al~~~p~~~~~~~ 127 (148)
T 2vgx_A 100 LQXGELAEAESGLFLAQELIANXPEFXE 127 (148)
T ss_dssp HHTTCHHHHHHHHHHHHHHHTTCGGGHH
T ss_pred HHcCCHHHHHHHHHHHHHHCcCCCcchH
Confidence 9999999999999999999998776543
No 113
>2c2l_A CHIP, carboxy terminus of HSP70-interacting protein; chaperone, E3 ligase, ubiquitinylation, TPR, heat-shock protein complex; 3.3A {Mus musculus} SCOP: a.118.8.1 g.44.1.2
Probab=99.59 E-value=1.8e-15 Score=153.32 Aligned_cols=198 Identities=12% Similarity=-0.003 Sum_probs=160.8
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhccCCCchhchHHHHH
Q 006120 125 FDGHMAIGRVLYEHQLFKEALVSFKRACELQPTDVRPHFRAGNCLYVLGRYREAKEEYLLALEAAETGGNQWAYLLPQIY 204 (660)
Q Consensus 125 ~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~ 204 (660)
...+..+|..++..|++++|+..|+++++.+|+++.++.++|.++..+|++++|+..++++++++|. ...++
T Consensus 4 a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~--------~~~~~ 75 (281)
T 2c2l_A 4 AQELKEQGNRLFVGRKYPEAAACYGRAITRNPLVAVYYTNRALCYLKMQQPEQALADCRRALELDGQ--------SVKAH 75 (281)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTSCTT--------CHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCC--------CHHHH
Confidence 4678899999999999999999999999999999999999999999999999999999999999998 78899
Q ss_pred HHHHHHHHHCCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhCCC
Q 006120 205 VNLGIALEGEGMVLSACEYYRESAILCPTHFRALKLLGSALFGVGEYRAAVKALEEAIFIKPDYADAHCDLASALHAMGE 284 (660)
Q Consensus 205 ~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~ 284 (660)
+++|.++..+|++++|+..|+++++++|++...+........ +..++...........+.+..+...++.++ .|+
T Consensus 76 ~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~i~~~l~~l~--~~~ 150 (281)
T 2c2l_A 76 FFLGQCQLEMESYDEAIANLQRAYSLAKEQRLNFGDDIPSAL---RIAKKKRWNSIEERRIHQESELHSYLTRLI--AAE 150 (281)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCCCSHHHHHH---HHHHHHHHHHHHHTCCCCCCHHHHHHHHHH--HHH
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHhCccchhhHHHHHHHHH---HHHHHHHHHHHHHHHHhhhHHHHHHHHHHH--HHH
Confidence 999999999999999999999999998865322221222221 122233333444456777788888887765 689
Q ss_pred hHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHcccC
Q 006120 285 DERAIEVFQKAIDLKPGHVDALYNLGGLYMDLGAGETEEAKKALKEALKMTN 336 (660)
Q Consensus 285 ~~~A~~~~~~al~~~p~~~~a~~~La~~~~~~~~g~~~eA~~~~~~al~l~p 336 (660)
+++|+..++++++++|++......++.++.... +.+++|.+.|.++.+..+
T Consensus 151 ~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~-~~~~~a~~~f~~a~~~~~ 201 (281)
T 2c2l_A 151 RERELEECQRNHEGHEDDGHIRAQQACIEAKHD-KYMADMDELFSQVDEKRK 201 (281)
T ss_dssp HHHHHTTTSGGGTTTSCHHHHTHHHHHHHHHHH-HHHHHHHHHHHHSSCTTS
T ss_pred HHHHHHHHHhhhccccchhhhhhHHHHHHHHHH-HHHHHHHHHHHhhhcccc
Confidence 999999999999999998888888887776653 668889999998876543
No 114
>2fo7_A Synthetic consensus TPR protein; tetratricopeptide repeat, consensus protein, superhelix, de novo protein; 2.30A {Synthetic} SCOP: k.38.1.1 PDB: 2hyz_A
Probab=99.59 E-value=8e-14 Score=122.29 Aligned_cols=135 Identities=33% Similarity=0.488 Sum_probs=127.9
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHhccCCCchhchHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCcHHHHH
Q 006120 160 RPHFRAGNCLYVLGRYREAKEEYLLALEAAETGGNQWAYLLPQIYVNLGIALEGEGMVLSACEYYRESAILCPTHFRALK 239 (660)
Q Consensus 160 ~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~ 239 (660)
.+++.+|.++...|++++|+..++++++..|. ...++..+|.++...|++++|+.++++++...|.+..++.
T Consensus 2 ~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~--------~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~ 73 (136)
T 2fo7_A 2 EAWYNLGNAYYKQGDYDEAIEYYQKALELDPR--------SAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPRSAEAWY 73 (136)
T ss_dssp HHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTT--------CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHH
T ss_pred cHHHHHHHHHHHcCcHHHHHHHHHHHHHcCCc--------chhHHHHHHHHHHHhcCHHHHHHHHHHHHHHCCCchHHHH
Confidence 46788999999999999999999999999887 6778899999999999999999999999999999999999
Q ss_pred HHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhCCChHHHHHHHHHHHHhCCCC
Q 006120 240 LLGSALFGVGEYRAAVKALEEAIFIKPDYADAHCDLASALHAMGEDERAIEVFQKAIDLKPGH 302 (660)
Q Consensus 240 ~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~ 302 (660)
.+|.++...|++++|+..+++++...|.+..++..+|.++...|++++|+..+++++..+|+.
T Consensus 74 ~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~ 136 (136)
T 2fo7_A 74 NLGNAYYKQGDYDEAIEYYQKALELDPRSAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPRS 136 (136)
T ss_dssp HHHHHHHTTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHSTTC
T ss_pred HHHHHHHHhcCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHccHHHHHHHHHHHHccCCCC
Confidence 999999999999999999999999999999999999999999999999999999999998863
No 115
>2qfc_A PLCR protein; TPR, HTH, transcription regulation; 2.60A {Bacillus thuringiensis serovar ISRAELE35646}
Probab=99.59 E-value=1.1e-13 Score=140.78 Aligned_cols=172 Identities=12% Similarity=0.057 Sum_probs=141.7
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCH------HHHHHHHHHHHHcCCHHHHHHHHHHHHHHhccCCCchhc
Q 006120 125 FDGHMAIGRVLYEHQLFKEALVSFKRACELQPTDV------RPHFRAGNCLYVLGRYREAKEEYLLALEAAETGGNQWAY 198 (660)
Q Consensus 125 ~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~------~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~ 198 (660)
...+...+..+...|++++|+..+.++++..+... ..++.+|.++...|++++|+..++++++..+...+.+.
T Consensus 75 ~~~l~~~~~~~~~~~~y~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~- 153 (293)
T 2qfc_A 75 KKQFKDQVIMLCKQKRYKEIYNKVWNELKKEEYHPEFQQFLQWQYYVAAYVLKKVDYEYCILELKKLLNQQLTGIDVYQ- 153 (293)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHTCCCCHHHHHHHHHHHHHHHHHHTSSCHHHHHHHHHHHHTTCCCSSCTTH-
T ss_pred HHHHHHHHHHHHHhhhHHHHHHHHHHHhccccCChhHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhcCCchHH-
Confidence 35567788899999999999999999999887654 34667889999999999999999999988776555443
Q ss_pred hHHHHHHHHHHHHHHCCCHHHHHHHHHHHH---HhCCCc----HHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCC----
Q 006120 199 LLPQIYVNLGIALEGEGMVLSACEYYRESA---ILCPTH----FRALKLLGSALFGVGEYRAAVKALEEAIFIKPD---- 267 (660)
Q Consensus 199 ~~~~~~~~la~~~~~~g~~~~A~~~~~~al---~~~p~~----~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~---- 267 (660)
...++.++|.+|..+|++++|+.+|++++ +..|++ ..++.++|.+|..+|++++|+.++++++.+.++
T Consensus 154 -~~~~~~~lg~~y~~~~~~~~A~~~~~kal~~~~~~~~~~~~~~~~~~nlg~~y~~~~~y~~Al~~~~kal~~~~~~~~~ 232 (293)
T 2qfc_A 154 -NLYIENAIANIYAENGYLKKGIDLFEQILKQLEALHDNEEFDVKVRYNHAKALYLDSRYEESLYQVNKAIEISCRINSM 232 (293)
T ss_dssp -HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTBC
T ss_pred -HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcCccccchHHHHHhHHHHHHHHhhHHHHHHHHHHHHHHHHhcCcH
Confidence 57789999999999999999999999998 445553 258888999999999999999999998887532
Q ss_pred --CHHHHHHHHHHHHhCCChHHH-HHHHHHHHHh
Q 006120 268 --YADAHCDLASALHAMGEDERA-IEVFQKAIDL 298 (660)
Q Consensus 268 --~~~~~~~la~~~~~~g~~~~A-~~~~~~al~~ 298 (660)
...++.++|.+|..+|++++| ..++++++.+
T Consensus 233 ~~~~~~~~~lg~~y~~~g~~~~Ai~~~~~~Al~~ 266 (293)
T 2qfc_A 233 ALIGQLYYQRGECLRKLEYEEAEIEDAYKKASFF 266 (293)
T ss_dssp SSHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHH
Confidence 267788888888888888888 7778888765
No 116
>2qfc_A PLCR protein; TPR, HTH, transcription regulation; 2.60A {Bacillus thuringiensis serovar ISRAELE35646}
Probab=99.58 E-value=7.3e-14 Score=142.17 Aligned_cols=177 Identities=14% Similarity=0.016 Sum_probs=149.8
Q ss_pred CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhccCCCchhchHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCc--
Q 006120 157 TDVRPHFRAGNCLYVLGRYREAKEEYLLALEAAETGGNQWAYLLPQIYVNLGIALEGEGMVLSACEYYRESAILCPTH-- 234 (660)
Q Consensus 157 ~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~-- 234 (660)
.....+...+..+...|++++|++.+.++++..+....... ....++.+|.++...|++++|+.++++++...+..
T Consensus 73 ~~~~~l~~~~~~~~~~~~y~~A~~~~~~~l~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~ 150 (293)
T 2qfc_A 73 ERKKQFKDQVIMLCKQKRYKEIYNKVWNELKKEEYHPEFQQ--FLQWQYYVAAYVLKKVDYEYCILELKKLLNQQLTGID 150 (293)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTCCCCHHHHH--HHHHHHHHHHHHHTSSCHHHHHHHHHHHHTTCCCSSC
T ss_pred hHHHHHHHHHHHHHHhhhHHHHHHHHHHHhccccCChhHHH--HHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhcCCc
Confidence 34456677888999999999999999999998775322211 45667789999999999999999999999875543
Q ss_pred ----HHHHHHHHHHHHHCCCHHHHHHHHHHHH---HhCCCCH----HHHHHHHHHHHhCCChHHHHHHHHHHHHhCCC--
Q 006120 235 ----FRALKLLGSALFGVGEYRAAVKALEEAI---FIKPDYA----DAHCDLASALHAMGEDERAIEVFQKAIDLKPG-- 301 (660)
Q Consensus 235 ----~~~~~~lg~~~~~~g~~~~A~~~~~~al---~~~p~~~----~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~-- 301 (660)
..++.++|.+|...|++++|+.+|++++ +..|++. .++.++|.+|..+|++++|+.++++++++.+.
T Consensus 151 ~~~~~~~~~~lg~~y~~~~~~~~A~~~~~kal~~~~~~~~~~~~~~~~~~nlg~~y~~~~~y~~Al~~~~kal~~~~~~~ 230 (293)
T 2qfc_A 151 VYQNLYIENAIANIYAENGYLKKGIDLFEQILKQLEALHDNEEFDVKVRYNHAKALYLDSRYEESLYQVNKAIEISCRIN 230 (293)
T ss_dssp TTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTT
T ss_pred hHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcCccccchHHHHHhHHHHHHHHhhHHHHHHHHHHHHHHHHhcC
Confidence 6689999999999999999999999999 4456543 68999999999999999999999999988533
Q ss_pred ----CHHHHHHHHHHHHHhcCCCHHHH-HHHHHHHHcccCC
Q 006120 302 ----HVDALYNLGGLYMDLGAGETEEA-KKALKEALKMTNR 337 (660)
Q Consensus 302 ----~~~a~~~La~~~~~~~~g~~~eA-~~~~~~al~l~p~ 337 (660)
...++.++|.+|..+ |++++| ..++++++.+...
T Consensus 231 ~~~~~~~~~~~lg~~y~~~--g~~~~Ai~~~~~~Al~~~~~ 269 (293)
T 2qfc_A 231 SMALIGQLYYQRGECLRKL--EYEEAEIEDAYKKASFFFDI 269 (293)
T ss_dssp BCSSHHHHHHHHHHHHHHT--TCCHHHHHHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHHHHHc--CCcHHHHHHHHHHHHHHHHH
Confidence 277999999999999 999999 8889999987643
No 117
>1p5q_A FKBP52, FK506-binding protein 4; isomerase; 2.80A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 PDB: 1qz2_A
Probab=99.57 E-value=2.6e-15 Score=156.17 Aligned_cols=162 Identities=15% Similarity=0.152 Sum_probs=136.9
Q ss_pred HcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhccCCCc-------hhchHHHHHHHHHH
Q 006120 137 EHQLFKEALVSFKRACELQPTDVRPHFRAGNCLYVLGRYREAKEEYLLALEAAETGGNQ-------WAYLLPQIYVNLGI 209 (660)
Q Consensus 137 ~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~-------~~~~~~~~~~~la~ 209 (660)
..+++++|+..++++++..|..+.++..+|.++...|++++|+..|++++++.|..... .......++.++|.
T Consensus 125 ~L~~~~~A~~~~~~a~~~~p~~a~~~~~~g~~~~~~g~~~~A~~~y~~Al~~~p~~~~~~~~~~~~~~~~~~~~~~nla~ 204 (336)
T 1p5q_A 125 HLKSFEKAKESWEMNSEEKLEQSTIVKERGTVYFKEGKYKQALLQYKKIVSWLEYESSFSNEEAQKAQALRLASHLNLAM 204 (336)
T ss_dssp EEEEEECCCCGGGCCHHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHTTTCCCCCSHHHHHHHHHHHHHHHHHHH
T ss_pred EEeecccccchhcCCHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHhhccccCChHHHHHHHHHHHHHHHHHHH
Confidence 34566677777777777777777888888888888888888888888888887774210 00013689999999
Q ss_pred HHHHCCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhCCChHHH-
Q 006120 210 ALEGEGMVLSACEYYRESAILCPTHFRALKLLGSALFGVGEYRAAVKALEEAIFIKPDYADAHCDLASALHAMGEDERA- 288 (660)
Q Consensus 210 ~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A- 288 (660)
++..+|++++|+.+|+++++++|+++.+++++|.++..+|++++|+..|+++++++|++..++.+++.++..+|++++|
T Consensus 205 ~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~P~~~~a~~~l~~~~~~~~~~~~a~ 284 (336)
T 1p5q_A 205 CHLKLQAFSAAIESCNKALELDSNNEKGLSRRGEAHLAVNDFELARADFQKVLQLYPNNKAAKTQLAVCQQRIRRQLARE 284 (336)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSSCHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHh
Q 006120 289 IEVFQKAIDL 298 (660)
Q Consensus 289 ~~~~~~al~~ 298 (660)
...|++++..
T Consensus 285 ~~~~~~~~~~ 294 (336)
T 1p5q_A 285 KKLYANMFER 294 (336)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHH
Confidence 4566766643
No 118
>2xcb_A PCRH, regulatory protein PCRH; protein transport, bacterial toxin, type III secretion, protein binding; 1.85A {Pseudomonas aeruginosa} PDB: 2xcc_A
Probab=99.56 E-value=1.6e-14 Score=129.98 Aligned_cols=105 Identities=16% Similarity=0.123 Sum_probs=56.0
Q ss_pred HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHH
Q 006120 200 LPQIYVNLGIALEGEGMVLSACEYYRESAILCPTHFRALKLLGSALFGVGEYRAAVKALEEAIFIKPDYADAHCDLASAL 279 (660)
Q Consensus 200 ~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~ 279 (660)
....++.+|..+...|++++|+..|++++..+|+++.+|..+|.++...|++++|+..|++++.++|+++.+++++|.++
T Consensus 17 ~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~ 96 (142)
T 2xcb_A 17 TLEQLYALGFNQYQAGKWDDAQKIFQALCMLDHYDARYFLGLGACRQSLGLYEQALQSYSYGALMDINEPRFPFHAAECH 96 (142)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHccHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCCCcHHHHHHHHHH
Confidence 44455555555555555555555555555555555555555555555555555555555555555555555555555555
Q ss_pred HhCCChHHHHHHHHHHHHhCCCCHH
Q 006120 280 HAMGEDERAIEVFQKAIDLKPGHVD 304 (660)
Q Consensus 280 ~~~g~~~~A~~~~~~al~~~p~~~~ 304 (660)
..+|++++|+..|+++++++|+++.
T Consensus 97 ~~~g~~~~A~~~~~~al~~~p~~~~ 121 (142)
T 2xcb_A 97 LQLGDLDGAESGFYSARALAAAQPA 121 (142)
T ss_dssp HHTTCHHHHHHHHHHHHHHHHTCGG
T ss_pred HHcCCHHHHHHHHHHHHHhCCCCcc
Confidence 5555555555555555555554443
No 119
>3u3w_A Transcriptional activator PLCR protein; ternary complex, PLCR-PAPR7-DNA, HTH DNA-binding domain, QUO sensing; 2.40A {Bacillus thuringiensis} PDB: 2qfc_A
Probab=99.56 E-value=1.3e-13 Score=140.34 Aligned_cols=174 Identities=11% Similarity=0.049 Sum_probs=133.1
Q ss_pred HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHH------HHHHHHHHHHHcCCHHHHHHHHHHHHHHhccCCCch
Q 006120 123 EAFDGHMAIGRVLYEHQLFKEALVSFKRACELQPTDVR------PHFRAGNCLYVLGRYREAKEEYLLALEAAETGGNQW 196 (660)
Q Consensus 123 ~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~------~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~ 196 (660)
.....+...+..+...|++++|...++++++..+..+. .+..+|.++...+++++|+.++++++.+.+...+..
T Consensus 73 ~~~~~l~~~i~~~~~~~~y~~a~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~Ai~~~~~al~~~~~~~~~~ 152 (293)
T 3u3w_A 73 ERKKQFKDQVIMLCKQKRYKEIYNKVWNELKKEEYHPEFQQFLQWQYYVAAYVLKKVDYEYCILELKKLLNQQLTGIDVY 152 (293)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHHHHHTTSSCHHHHHHHHHHHHHTCCCCSCTT
T ss_pred hhHHHHHHHHHHHHHHhhHHHHHHHHHHHhccccCChHHHHHHHHHHHHHHHHHcccCHHHHHHHHHHHHHHhcccccHH
Confidence 33455566788899999999999999999998776654 344588899889999999999999999876655543
Q ss_pred hchHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-------CCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCC-
Q 006120 197 AYLLPQIYVNLGIALEGEGMVLSACEYYRESAILC-------PTHFRALKLLGSALFGVGEYRAAVKALEEAIFIKPDY- 268 (660)
Q Consensus 197 ~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~-------p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~- 268 (660)
. ...++.++|.+|..+|++++|+.+|+++++.. +....++.++|.+|..+|++++|+.++++++++.+..
T Consensus 153 ~--~~~~~~~lg~~y~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~nlg~~y~~~~~y~~A~~~~~~al~~~~~~~ 230 (293)
T 3u3w_A 153 Q--NLYIENAIANIYAENGYLKKGIDLFEQILKQLEALHDNEEFDVKVRYNHAKALYLDSRYEESLYQVNKAIEISCRIN 230 (293)
T ss_dssp H--HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSSCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTT
T ss_pred H--HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcccchhHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHcC
Confidence 3 56789999999999999999999999998531 1224567777888888888888888887777765332
Q ss_pred -----HHHHHHHHHHHHhCCC-hHHHHHHHHHHHHh
Q 006120 269 -----ADAHCDLASALHAMGE-DERAIEVFQKAIDL 298 (660)
Q Consensus 269 -----~~~~~~la~~~~~~g~-~~~A~~~~~~al~~ 298 (660)
+.++.++|.++..+|+ +++|+.++++|+.+
T Consensus 231 ~~~~~~~~~~~lg~~~~~~g~~~~~A~~~~~~Al~i 266 (293)
T 3u3w_A 231 SMALIGQLYYQRGECLRKLEYEEAEIEDAYKKASFF 266 (293)
T ss_dssp BCTTHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHHHHHhCCcHHHHHHHHHHHHHH
Confidence 5677777777777774 47777777777654
No 120
>2fbn_A 70 kDa peptidylprolyl isomerase, putative; sulfur SAD, PFL2275C, TPR-containing domain, structural genomics; 1.63A {Plasmodium falciparum} SCOP: a.118.8.1
Probab=99.56 E-value=1.3e-14 Score=138.59 Aligned_cols=163 Identities=17% Similarity=0.047 Sum_probs=114.2
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHhccCCCchhchHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCcH-----
Q 006120 161 PHFRAGNCLYVLGRYREAKEEYLLALEAAETGGNQWAYLLPQIYVNLGIALEGEGMVLSACEYYRESAILCPTHF----- 235 (660)
Q Consensus 161 ~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~----- 235 (660)
.....+......|.+++|.+.+.......+. .+..+..+|..+...|++++|+.+|++++.+.|.++
T Consensus 6 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--------~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~ 77 (198)
T 2fbn_A 6 HHHHHSSGRENLYFQGAKKSIYDYTDEEKVQ--------SAFDIKEEGNEFFKKNEINEAIVKYKEALDFFIHTEEWDDQ 77 (198)
T ss_dssp ----------------CCCSGGGCCHHHHHH--------HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTTTCTTCCCH
T ss_pred cccchhhhhhhhhhccccCchhhCCHHHHHH--------HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhcccccchh
Confidence 3344455566667777777666666555555 667777777777777888888888887777777665
Q ss_pred -----------HHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhCCChHHHHHHHHHHHHhCCCCHH
Q 006120 236 -----------RALKLLGSALFGVGEYRAAVKALEEAIFIKPDYADAHCDLASALHAMGEDERAIEVFQKAIDLKPGHVD 304 (660)
Q Consensus 236 -----------~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~ 304 (660)
.++.++|.++...|++++|+.++++++.++|++..+++.+|.++..+|++++|+.+|+++++++|++..
T Consensus 78 ~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~ 157 (198)
T 2fbn_A 78 ILLDKKKNIEISCNLNLATCYNKNKDYPKAIDHASKVLKIDKNNVKALYKLGVANMYFGFLEEAKENLYKAASLNPNNLD 157 (198)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSTTCHH
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHcccHHHHHHHHHHHHHHCCCcHH
Confidence 788889999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHhcCCCHHHHH-HHHHHHHc
Q 006120 305 ALYNLGGLYMDLGAGETEEAK-KALKEALK 333 (660)
Q Consensus 305 a~~~La~~~~~~~~g~~~eA~-~~~~~al~ 333 (660)
++..++.++..+ ++..++. ..+.+.+.
T Consensus 158 ~~~~l~~~~~~~--~~~~~~~~~~~~~~f~ 185 (198)
T 2fbn_A 158 IRNSYELCVNKL--KEARKKDKLTFGGMFD 185 (198)
T ss_dssp HHHHHHHHHHHH--HHHHC-----------
T ss_pred HHHHHHHHHHHH--HHHHHHHHHHHHHHhc
Confidence 999999998887 7777666 44444443
No 121
>1hh8_A P67PHOX, NCF-2, neutrophil cytosol factor 2; cell cycle, phagocyte oxidase factor, SH3 domain, repeat, TPR repeat cell cycle; HET: FLC; 1.8A {Homo sapiens} SCOP: a.118.8.1 PDB: 1wm5_A 1e96_B*
Probab=99.56 E-value=2.6e-13 Score=130.43 Aligned_cols=146 Identities=18% Similarity=0.118 Sum_probs=131.3
Q ss_pred HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHH
Q 006120 200 LPQIYVNLGIALEGEGMVLSACEYYRESAILCPTHFRALKLLGSALFGVGEYRAAVKALEEAIFIKPDYADAHCDLASAL 279 (660)
Q Consensus 200 ~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~ 279 (660)
....++.+|.++...|++++|+..|++++ .| ++.++.++|.++...|++++|+..|++++.++|+++.++.++|.++
T Consensus 5 ~~~~~~~~g~~~~~~~~~~~A~~~~~~a~--~~-~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~lg~~~ 81 (213)
T 1hh8_A 5 EAISLWNEGVLAADKKDWKGALDAFSAVQ--DP-HSRICFNIGCMYTILKNMTEAEKAFTRSINRDKHLAVAYFQRGMLY 81 (213)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHTSS--SC-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhCCHHHHHHHHHHHc--CC-ChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCccchHHHHHHHHHH
Confidence 45668899999999999999999999985 33 7889999999999999999999999999999999999999999999
Q ss_pred HhCCChHHHHHHHHHHHHhCCCCH----------------HHHHHHHHHHHHhcCCCHHHHHHHHHHHHcccCChhHHHH
Q 006120 280 HAMGEDERAIEVFQKAIDLKPGHV----------------DALYNLGGLYMDLGAGETEEAKKALKEALKMTNRVELHDA 343 (660)
Q Consensus 280 ~~~g~~~~A~~~~~~al~~~p~~~----------------~a~~~La~~~~~~~~g~~~eA~~~~~~al~l~p~~~~~~~ 343 (660)
..+|++++|+..|++++++.|.+. .++.++|.++..+ |++++|+.+|++++++.|+......
T Consensus 82 ~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~--g~~~~A~~~~~~al~~~p~~~~~~~ 159 (213)
T 1hh8_A 82 YQTEKYDLAIKDLKEALIQLRGNQLIDYKILGLQFKLFACEVLYNIAFMYAKK--EEWKKAEEQLALATSMKSEPRHSKI 159 (213)
T ss_dssp HHTTCHHHHHHHHHHHHHTTTTCSEEECGGGTBCCEEEHHHHHHHHHHHHHHT--TCHHHHHHHHHHHHTTCCSGGGGHH
T ss_pred HHcccHHHHHHHHHHHHHhCCCccHHHHHHhccccCccchHHHHHHHHHHHHc--cCHHHHHHHHHHHHHcCcccccchH
Confidence 999999999999999999888766 9999999999999 9999999999999999998654333
Q ss_pred HHHHHHH
Q 006120 344 VSHLKQL 350 (660)
Q Consensus 344 ~~~l~~l 350 (660)
...+..+
T Consensus 160 ~~a~~~~ 166 (213)
T 1hh8_A 160 DKAMECV 166 (213)
T ss_dssp HHHHHHH
T ss_pred HHHHHHH
Confidence 3333333
No 122
>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*
Probab=99.55 E-value=1e-14 Score=161.85 Aligned_cols=188 Identities=10% Similarity=-0.055 Sum_probs=173.7
Q ss_pred CHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCC----------HHHHHHHHHHHHHHhccCCCchhchHHHHHHHHHH
Q 006120 140 LFKEALVSFKRACELQPTDVRPHFRAGNCLYVLGR----------YREAKEEYLLALEAAETGGNQWAYLLPQIYVNLGI 209 (660)
Q Consensus 140 ~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~----------~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~la~ 209 (660)
..++|+..+.+++..+|++..+|+..+.++...|+ ++++++.++++++.+|+ ...+|...+.
T Consensus 44 ~~eeal~~~~~~l~~nP~~~taW~~R~~~l~~l~~~~~~~~~~~~~~~eL~~~~~~l~~~pK--------~y~aW~hR~w 115 (567)
T 1dce_A 44 LDESVLELTSQILGANPDFATLWNCRREVLQHLETEKSPEESAALVKAELGFLESCLRVNPK--------SYGTWHHRCW 115 (567)
T ss_dssp CSHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHHHHHHHCTT--------CHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHCchhHHHHHHHHHHHHhcccccchhhhhhhHHHHHHHHHHHHHhCCC--------CHHHHHHHHH
Confidence 34678999999999999999999999999999998 99999999999999999 8899999999
Q ss_pred HHHHCC--CHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHCC-CHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhC----
Q 006120 210 ALEGEG--MVLSACEYYRESAILCPTHFRALKLLGSALFGVG-EYRAAVKALEEAIFIKPDYADAHCDLASALHAM---- 282 (660)
Q Consensus 210 ~~~~~g--~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g-~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~---- 282 (660)
++...+ +++++++.+.++++.+|.+..+|...+.++...| .++++++++.++++.+|.+..+|..++.++..+
T Consensus 116 ~l~~l~~~~~~~el~~~~k~l~~d~~N~~aW~~R~~~l~~l~~~~~~el~~~~~~I~~~p~n~saW~~r~~ll~~l~~~~ 195 (567)
T 1dce_A 116 LLSRLPEPNWARELELCARFLEADERNFHCWDYRRFVAAQAAVAPAEELAFTDSLITRNFSNYSSWHYRSCLLPQLHPQP 195 (567)
T ss_dssp HHHTCSSCCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTCCCHHHHHHHHHTTTTTTCCCHHHHHHHHHHHHHHSCCC
T ss_pred HHHHcccccHHHHHHHHHHHHhhccccccHHHHHHHHHHHcCCChHHHHHHHHHHHHHCCCCccHHHHHHHHHHhhcccc
Confidence 999999 7799999999999999999999999999999999 999999999999999999999999999999875
Q ss_pred ----------CChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCCCHHH------------HHHHHHHHHcccCC
Q 006120 283 ----------GEDERAIEVFQKAIDLKPGHVDALYNLGGLYMDLGAGETEE------------AKKALKEALKMTNR 337 (660)
Q Consensus 283 ----------g~~~~A~~~~~~al~~~p~~~~a~~~La~~~~~~~~g~~~e------------A~~~~~~al~l~p~ 337 (660)
+.+++|++++.+|+.++|++..+|+.++.++... +++++ |+.+|.+++.++|.
T Consensus 196 ~~~~~~~~~~~~~~eel~~~~~ai~~~P~~~saW~y~~~ll~~~--~~~~~~~~~~~~~~~~~~~~~f~~~i~~~~~ 270 (567)
T 1dce_A 196 DSGPQGRLPENVLLKELELVQNAFFTDPNDQSAWFYHRWLLGRA--EPHDVLCCVHVSREEACLSVCFSRPLTVGSR 270 (567)
T ss_dssp CSSSCCSSCHHHHHHHHHHHHHHHHHCSSCSHHHHHHHHHHSCC--CCCSCEEEEEEETTTTEEEEEEEEEECTTBT
T ss_pred cccccccccHHHHHHHHHHHHHHHhhCCCCccHHHHHHHHHhcC--CCccceeeeeeccCCceEEEEeccceecccc
Confidence 5679999999999999999999999999999887 77655 55567777777654
No 123
>3upv_A Heat shock protein STI1; TPR-fold, adaptor protein for HSP70 and HSP90, C-terminal PA HSP70, peptide binding protein; 1.60A {Saccharomyces cerevisiae}
Probab=99.55 E-value=1.5e-13 Score=120.47 Aligned_cols=116 Identities=17% Similarity=0.052 Sum_probs=100.9
Q ss_pred HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHH
Q 006120 200 LPQIYVNLGIALEGEGMVLSACEYYRESAILCPTHFRALKLLGSALFGVGEYRAAVKALEEAIFIKPDYADAHCDLASAL 279 (660)
Q Consensus 200 ~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~ 279 (660)
.+..+..+|..+...|++++|+..|+++++++|+++.++.++|.++...|++++|+..++++++++|+++.++.++|.++
T Consensus 3 ~a~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~ 82 (126)
T 3upv_A 3 KAEEARLEGKEYFTKSDWPNAVKAYTEMIKRAPEDARGYSNRAAALAKLMSFPEAIADCNKAIEKDPNFVRAYIRKATAQ 82 (126)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCcHHHHHHHHHHH
Confidence 56778888888888999999999999998888888888888999988889999999999999988888888888899988
Q ss_pred HhCCChHHHHHHHHHHHHhC------CCCHHHHHHHHHHHHH
Q 006120 280 HAMGEDERAIEVFQKAIDLK------PGHVDALYNLGGLYMD 315 (660)
Q Consensus 280 ~~~g~~~~A~~~~~~al~~~------p~~~~a~~~La~~~~~ 315 (660)
..+|++++|+..|+++++++ |.+..++..++.+...
T Consensus 83 ~~~~~~~~A~~~~~~al~~~p~~~~~p~~~~~~~~l~~~~~~ 124 (126)
T 3upv_A 83 IAVKEYASALETLDAARTKDAEVNNGSSAREIDQLYYKASQQ 124 (126)
T ss_dssp HHTTCHHHHHHHHHHHHHHHHHHHTTTTHHHHHHHHHHHHHH
T ss_pred HHHhCHHHHHHHHHHHHHhCcccCCchhHHHHHHHHHHHHHh
Confidence 88899999999999888888 8888888887777654
No 124
>1a17_A Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, S helix; 2.45A {Homo sapiens} SCOP: a.118.8.1 PDB: 2bug_A
Probab=99.54 E-value=3.2e-13 Score=123.87 Aligned_cols=134 Identities=15% Similarity=0.097 Sum_probs=125.6
Q ss_pred HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHH
Q 006120 200 LPQIYVNLGIALEGEGMVLSACEYYRESAILCPTHFRALKLLGSALFGVGEYRAAVKALEEAIFIKPDYADAHCDLASAL 279 (660)
Q Consensus 200 ~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~ 279 (660)
.+..+..+|.++...|++++|+..|++++...|.+..++..+|.++...|++++|+..+++++.++|+++.++.++|.++
T Consensus 12 ~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~a~~~ 91 (166)
T 1a17_A 12 RAEELKTQANDYFKAKDYENAIKFYSQAIELNPSNAIYYGNRSLAYLRTECYGYALGDATRAIELDKKYIKGYYRRAASN 91 (166)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcccHHHHHHHHHHH
Confidence 67889999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HhCCChHHHHHHHHHHHHhCCCCHHHHHHHHHH--HHHhcCCCHHHHHHHHHHHHccc
Q 006120 280 HAMGEDERAIEVFQKAIDLKPGHVDALYNLGGL--YMDLGAGETEEAKKALKEALKMT 335 (660)
Q Consensus 280 ~~~g~~~~A~~~~~~al~~~p~~~~a~~~La~~--~~~~~~g~~~eA~~~~~~al~l~ 335 (660)
..+|++++|+.+++++++++|.+..++..++.+ +... |++++|+..++++..+.
T Consensus 92 ~~~~~~~~A~~~~~~a~~~~p~~~~~~~~~~~~~~~~~~--~~~~~A~~~~~~~~~~~ 147 (166)
T 1a17_A 92 MALGKFRAALRDYETVVKVKPHDKDAKMKYQECNKIVKQ--KAFERAIAGDEHKRSVV 147 (166)
T ss_dssp HHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHH
T ss_pred HHhccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHH--HHHHHHHHcccchHHHh
Confidence 999999999999999999999999888555554 7777 99999999999887654
No 125
>2xcb_A PCRH, regulatory protein PCRH; protein transport, bacterial toxin, type III secretion, protein binding; 1.85A {Pseudomonas aeruginosa} PDB: 2xcc_A
Probab=99.54 E-value=5.5e-14 Score=126.47 Aligned_cols=114 Identities=14% Similarity=0.167 Sum_probs=107.6
Q ss_pred HHHHHHHHhCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhCCChHHHHHHHHHHHHhCCC
Q 006120 222 EYYRESAILCPTHFRALKLLGSALFGVGEYRAAVKALEEAIFIKPDYADAHCDLASALHAMGEDERAIEVFQKAIDLKPG 301 (660)
Q Consensus 222 ~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~ 301 (660)
..|++++.++|++...++.+|..+...|++++|+..|++++..+|+++.+|..+|.++..+|++++|+.+|++++.++|+
T Consensus 5 ~~l~~al~~~p~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~ 84 (142)
T 2xcb_A 5 GTLAMLRGLSEDTLEQLYALGFNQYQAGKWDDAQKIFQALCMLDHYDARYFLGLGACRQSLGLYEQALQSYSYGALMDIN 84 (142)
T ss_dssp ----CCTTCCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT
T ss_pred hhHHHHHcCCHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCC
Confidence 46778888999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHcccCC
Q 006120 302 HVDALYNLGGLYMDLGAGETEEAKKALKEALKMTNR 337 (660)
Q Consensus 302 ~~~a~~~La~~~~~~~~g~~~eA~~~~~~al~l~p~ 337 (660)
++.+++.+|.++..+ |++++|+..|++++++.|.
T Consensus 85 ~~~~~~~lg~~~~~~--g~~~~A~~~~~~al~~~p~ 118 (142)
T 2xcb_A 85 EPRFPFHAAECHLQL--GDLDGAESGFYSARALAAA 118 (142)
T ss_dssp CTHHHHHHHHHHHHT--TCHHHHHHHHHHHHHHHHT
T ss_pred CcHHHHHHHHHHHHc--CCHHHHHHHHHHHHHhCCC
Confidence 999999999999999 9999999999999999985
No 126
>1xi4_A Clathrin heavy chain; alpha-ZIG-ZAG, beta-propeller, endocytosis-exocyto complex; 7.90A {Bos taurus} SCOP: i.23.1.1 PDB: 1xi5_A 3iyv_A
Probab=99.54 E-value=1.6e-12 Score=151.01 Aligned_cols=187 Identities=22% Similarity=0.144 Sum_probs=102.6
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhccCCCch---------
Q 006120 126 DGHMAIGRVLYEHQLFKEALVSFKRACELQPTDVRPHFRAGNCLYVLGRYREAKEEYLLALEAAETGGNQW--------- 196 (660)
Q Consensus 126 ~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~--------- 196 (660)
.+|+.+|.++...|++++|+..|.++ +++..+..+|.++.+.|++++|+++|..+.+..+......
T Consensus 1106 ~vWsqLAKAql~~G~~kEAIdsYiKA-----dD~say~eVa~~~~~lGkyEEAIeyL~mArk~~~e~~Idt~LafaYAKl 1180 (1630)
T 1xi4_A 1106 AVWSQLAKAQLQKGMVKEAIDSYIKA-----DDPSSYMEVVQAANTSGNWEELVKYLQMARKKARESYVETELIFALAKT 1180 (1630)
T ss_pred HHHHHHHHHHHhCCCHHHHHHHHHhc-----CChHHHHHHHHHHHHcCCHHHHHHHHHHHHhhcccccccHHHHHHHHhh
Confidence 55556666666666666666666553 4555566666666666666666666655555443210000
Q ss_pred ---h-------chHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCC
Q 006120 197 ---A-------YLLPQIYVNLGIALEGEGMVLSACEYYRESAILCPTHFRALKLLGSALFGVGEYRAAVKALEEAIFIKP 266 (660)
Q Consensus 197 ---~-------~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p 266 (660)
. ......+..+|..+...|+|++|..+|.++ ..|..++.++.++|++++|++.+++|..
T Consensus 1181 ~rleele~fI~~~n~ad~~~iGd~le~eg~YeeA~~~Y~kA--------~ny~rLA~tLvkLge~q~AIEaarKA~n--- 1249 (1630)
T 1xi4_A 1181 NRLAELEEFINGPNNAHIQQVGDRCYDEKMYDAAKLLYNNV--------SNFGRLASTLVHLGEYQAAVDGARKANS--- 1249 (1630)
T ss_pred cCHHHHHHHHhCCCHHHHHHHHHHHHhcCCHHHHHHHHHhh--------hHHHHHHHHHHHhCCHHHHHHHHHHhCC---
Confidence 0 001234556788888888888888888775 4677778888888888888888877732
Q ss_pred CCHHHHHHHHHHHHhCCChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHcccC
Q 006120 267 DYADAHCDLASALHAMGEDERAIEVFQKAIDLKPGHVDALYNLGGLYMDLGAGETEEAKKALKEALKMTN 336 (660)
Q Consensus 267 ~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~La~~~~~~~~g~~~eA~~~~~~al~l~p 336 (660)
..+|...+.++...|++..|..+... +. .+++.+..++..|... |.+++|+.++++++.+++
T Consensus 1250 --~~aWkev~~acve~~Ef~LA~~cgl~-Ii---v~~deLeeli~yYe~~--G~feEAI~LlE~aL~Ler 1311 (1630)
T 1xi4_A 1250 --TRTWKEVCFACVDGKEFRLAQMCGLH-IV---VHADELEELINYYQDR--GYFEELITMLEAALGLER 1311 (1630)
T ss_pred --HHHHHHHHHHHhhhhHHHHHHHHHHh-hh---cCHHHHHHHHHHHHHc--CCHHHHHHHHHHHhccCh
Confidence 34444333333333333333333321 11 1233344455555544 555555555555555543
No 127
>4gcn_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; HET: PGE; 1.85A {Caenorhabditis elegans}
Probab=99.53 E-value=6.5e-14 Score=123.51 Aligned_cols=108 Identities=18% Similarity=0.181 Sum_probs=68.1
Q ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhCCChHHHHHHHHHHHHhCCCC-------HHHHH
Q 006120 235 FRALKLLGSALFGVGEYRAAVKALEEAIFIKPDYADAHCDLASALHAMGEDERAIEVFQKAIDLKPGH-------VDALY 307 (660)
Q Consensus 235 ~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~-------~~a~~ 307 (660)
+.++.++|..++..|++++|+.+|+++++++|+++.+|.++|.+|..+|++++|+..++++++++|++ ..++.
T Consensus 8 A~a~~~lG~~~~~~~~~~~A~~~y~~Al~~~p~~~~~~~nlg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~a~~~~ 87 (127)
T 4gcn_A 8 AIAEKDLGNAAYKQKDFEKAHVHYDKAIELDPSNITFYNNKAAVYFEEKKFAECVQFCEKAVEVGRETRADYKLIAKAMS 87 (127)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHhHHHHHHHhhhHHHHHHHHHHHHHhCcccchhhHHHHHHHH
Confidence 34555666666666666666666666666666666666666666666666666666666666665443 23566
Q ss_pred HHHHHHHHhcCCCHHHHHHHHHHHHcccCChhHHHHH
Q 006120 308 NLGGLYMDLGAGETEEAKKALKEALKMTNRVELHDAV 344 (660)
Q Consensus 308 ~La~~~~~~~~g~~~eA~~~~~~al~l~p~~~~~~~~ 344 (660)
++|.++..+ |++++|+.+|++++...|+++....+
T Consensus 88 ~lg~~~~~~--~~~~~A~~~~~kal~~~~~~~~~~~l 122 (127)
T 4gcn_A 88 RAGNAFQKQ--NDLSLAVQWFHRSLSEFRDPELVKKV 122 (127)
T ss_dssp HHHHHHHHT--TCHHHHHHHHHHHHHHSCCHHHHHHH
T ss_pred HHHHHHHHc--CCHHHHHHHHHHHHhhCcCHHHHHHH
Confidence 677777766 77777777777777776665544333
No 128
>2e2e_A Formate-dependent nitrite reductase complex NRFG; TPR, cytochrome C biogenesis, O157:H7 EDL933, formate- nitrite reductase complex, lyase; 2.05A {Escherichia coli}
Probab=99.53 E-value=1.9e-13 Score=127.62 Aligned_cols=138 Identities=13% Similarity=0.163 Sum_probs=121.7
Q ss_pred HHHCCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHH-HHhCCCh--HH
Q 006120 211 LEGEGMVLSACEYYRESAILCPTHFRALKLLGSALFGVGEYRAAVKALEEAIFIKPDYADAHCDLASA-LHAMGED--ER 287 (660)
Q Consensus 211 ~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~-~~~~g~~--~~ 287 (660)
+...|++++|+..+++++..+|+++.++..+|.++...|++++|+.+|++++.++|+++.++..+|.+ +...|++ ++
T Consensus 20 ~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~l~~~~~~~~~~~ 99 (177)
T 2e2e_A 20 FASQQNPEAQLQALQDKIRANPQNSEQWALLGEYYLWQNDYSNSLLAYRQALQLRGENAELYAALATVLYYQASQHMTAQ 99 (177)
T ss_dssp CC-----CCCCHHHHHHHHHCCSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHCSCHHHHHHHHHHHHHHTTTCCCHH
T ss_pred hhhccCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhcCCcchHH
Confidence 34678999999999999999999999999999999999999999999999999999999999999999 8899999 99
Q ss_pred HHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHcccCChh-HHHHHHHHHHH
Q 006120 288 AIEVFQKAIDLKPGHVDALYNLGGLYMDLGAGETEEAKKALKEALKMTNRVE-LHDAVSHLKQL 350 (660)
Q Consensus 288 A~~~~~~al~~~p~~~~a~~~La~~~~~~~~g~~~eA~~~~~~al~l~p~~~-~~~~~~~l~~l 350 (660)
|+..++++++.+|++..++..+|.++... |++++|+.+|++++++.|... ....+..+...
T Consensus 100 A~~~~~~al~~~p~~~~~~~~la~~~~~~--g~~~~A~~~~~~al~~~p~~~~~~~~~~~i~~~ 161 (177)
T 2e2e_A 100 TRAMIDKALALDSNEITALMLLASDAFMQ--ANYAQAIELWQKVMDLNSPRINRTQLVESINMA 161 (177)
T ss_dssp HHHHHHHHHHHCTTCHHHHHHHHHHHHHT--TCHHHHHHHHHHHHHTCCTTSCHHHHHHHHHHH
T ss_pred HHHHHHHHHHhCCCcHHHHHHHHHHHHHc--ccHHHHHHHHHHHHhhCCCCccHHHHHHHHHHH
Confidence 99999999999999999999999999999 999999999999999998743 33333334333
No 129
>3q7a_A Farnesyltransferase alpha subunit; protein prenyltransferase, transferase-transferase inhibitor; HET: SUC 3FX FPP 778; 2.00A {Cryptococcus neoformans} PDB: 3q73_A* 3q78_A* 3q79_A* 3q75_A* 3q7f_A* 3sfx_A* 3sfy_A*
Probab=99.53 E-value=6.4e-13 Score=136.37 Aligned_cols=183 Identities=13% Similarity=0.016 Sum_probs=167.8
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcC-CHHHHHHHHHHHHHHhccCCCchhchHHHHH
Q 006120 126 DGHMAIGRVLYEHQLFKEALVSFKRACELQPTDVRPHFRAGNCLYVLG-RYREAKEEYLLALEAAETGGNQWAYLLPQIY 204 (660)
Q Consensus 126 ~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g-~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~ 204 (660)
.++..+..+....+..++|+.++.+++.++|++..+|+..+.++...| .+++++..+.+++..+|+ ...+|
T Consensus 55 ~~~~~~r~~~~~~e~se~AL~lt~~~L~~nP~~ytaWn~R~~iL~~l~~~l~eEL~~~~~~L~~nPK--------ny~aW 126 (349)
T 3q7a_A 55 DAMDYFRAIAAKEEKSERALELTEIIVRMNPAHYTVWQYRFSLLTSLNKSLEDELRLMNEFAVQNLK--------SYQVW 126 (349)
T ss_dssp HHHHHHHHHHHTTCCSHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHTTCC--------CHHHH
T ss_pred HHHHHHHHHHHhCCCCHHHHHHHHHHHHhCchhHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHhCCC--------cHHHH
Confidence 444444445555566689999999999999999999999999999999 599999999999999999 78999
Q ss_pred HHHHHHHHHC-C-CHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHCCCHH--------HHHHHHHHHHHhCCCCHHHHHH
Q 006120 205 VNLGIALEGE-G-MVLSACEYYRESAILCPTHFRALKLLGSALFGVGEYR--------AAVKALEEAIFIKPDYADAHCD 274 (660)
Q Consensus 205 ~~la~~~~~~-g-~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~--------~A~~~~~~al~~~p~~~~~~~~ 274 (660)
...+.++... + ++++++.++.++++.+|.+..+|...+.++...|.++ ++++++.++++.+|.+..+|..
T Consensus 127 ~hR~wlL~~l~~~~~~~EL~~~~k~L~~dpkNy~AW~~R~wvl~~l~~~~~~~~~~~~eELe~~~k~I~~dp~N~SAW~~ 206 (349)
T 3q7a_A 127 HHRLLLLDRISPQDPVSEIEYIHGSLLPDPKNYHTWAYLHWLYSHFSTLGRISEAQWGSELDWCNEMLRVDGRNNSAWGW 206 (349)
T ss_dssp HHHHHHHHHHCCSCCHHHHHHHHHHTSSCTTCHHHHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHHHHHHCTTCHHHHHH
T ss_pred HHHHHHHHHhcCCChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhccccccchhhHHHHHHHHHHHHHhCCCCHHHHHH
Confidence 9999999887 7 8999999999999999999999999999999888887 9999999999999999999999
Q ss_pred HHHHHHhCCC-------hHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHh
Q 006120 275 LASALHAMGE-------DERAIEVFQKAIDLKPGHVDALYNLGGLYMDL 316 (660)
Q Consensus 275 la~~~~~~g~-------~~~A~~~~~~al~~~p~~~~a~~~La~~~~~~ 316 (660)
.+.++...++ ++++++++++++.++|++..+|..+..++...
T Consensus 207 R~~lL~~l~~~~~~~~~~~eELe~~~~aI~~~P~n~SaW~Ylr~Ll~~~ 255 (349)
T 3q7a_A 207 RWYLRVSRPGAETSSRSLQDELIYILKSIHLIPHNVSAWNYLRGFLKHF 255 (349)
T ss_dssp HHHHHTTSTTCCCCHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHT
T ss_pred HHHHHHhccccccchHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhc
Confidence 9999999987 79999999999999999999999999999877
No 130
>1hh8_A P67PHOX, NCF-2, neutrophil cytosol factor 2; cell cycle, phagocyte oxidase factor, SH3 domain, repeat, TPR repeat cell cycle; HET: FLC; 1.8A {Homo sapiens} SCOP: a.118.8.1 PDB: 1wm5_A 1e96_B*
Probab=99.52 E-value=4.1e-13 Score=129.02 Aligned_cols=130 Identities=18% Similarity=0.185 Sum_probs=70.7
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhccCCCchhchHHHHHHH
Q 006120 127 GHMAIGRVLYEHQLFKEALVSFKRACELQPTDVRPHFRAGNCLYVLGRYREAKEEYLLALEAAETGGNQWAYLLPQIYVN 206 (660)
Q Consensus 127 ~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~ 206 (660)
.++.+|..+...|++++|+..|++++ .| ++.+++.+|.++...|++++|+..++++++++|. .+.++.+
T Consensus 8 ~~~~~g~~~~~~~~~~~A~~~~~~a~--~~-~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~--------~~~~~~~ 76 (213)
T 1hh8_A 8 SLWNEGVLAADKKDWKGALDAFSAVQ--DP-HSRICFNIGCMYTILKNMTEAEKAFTRSINRDKH--------LAVAYFQ 76 (213)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHTSS--SC-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT--------CHHHHHH
T ss_pred HHHHHHHHHHHhCCHHHHHHHHHHHc--CC-ChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcc--------chHHHHH
Confidence 34555666666666666666665553 22 4555555555555555555555555555555554 4455555
Q ss_pred HHHHHHHCCCHHHHHHHHHHHHHhCCCcH----------------HHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCC
Q 006120 207 LGIALEGEGMVLSACEYYRESAILCPTHF----------------RALKLLGSALFGVGEYRAAVKALEEAIFIKPD 267 (660)
Q Consensus 207 la~~~~~~g~~~~A~~~~~~al~~~p~~~----------------~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~ 267 (660)
+|.++...|++++|+..|+++++..|.+. .++.++|.++...|++++|+..+++++++.|+
T Consensus 77 lg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~ 153 (213)
T 1hh8_A 77 RGMLYYQTEKYDLAIKDLKEALIQLRGNQLIDYKILGLQFKLFACEVLYNIAFMYAKKEEWKKAEEQLALATSMKSE 153 (213)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHTTTTCSEEECGGGTBCCEEEHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCCS
T ss_pred HHHHHHHcccHHHHHHHHHHHHHhCCCccHHHHHHhccccCccchHHHHHHHHHHHHccCHHHHHHHHHHHHHcCcc
Confidence 55555555555555555555555544433 44445555555555555555555555554444
No 131
>4gcn_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; HET: PGE; 1.85A {Caenorhabditis elegans}
Probab=99.52 E-value=6.4e-13 Score=117.07 Aligned_cols=116 Identities=16% Similarity=0.231 Sum_probs=102.3
Q ss_pred HHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhccCCCchhchHH
Q 006120 122 EEAFDGHMAIGRVLYEHQLFKEALVSFKRACELQPTDVRPHFRAGNCLYVLGRYREAKEEYLLALEAAETGGNQWAYLLP 201 (660)
Q Consensus 122 ~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~ 201 (660)
.+.+.++.++|..++..|+|++|+.+|+++++++|+++.++.++|.+|..+|++++|+..+++++++.|.....+.. .+
T Consensus 5 ~d~A~a~~~lG~~~~~~~~~~~A~~~y~~Al~~~p~~~~~~~nlg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~-~a 83 (127)
T 4gcn_A 5 TDAAIAEKDLGNAAYKQKDFEKAHVHYDKAIELDPSNITFYNNKAAVYFEEKKFAECVQFCEKAVEVGRETRADYKL-IA 83 (127)
T ss_dssp HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCHHH-HH
T ss_pred HHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHhHHHHHHHhhhHHHHHHHHHHHHHhCcccchhhHH-HH
Confidence 34567889999999999999999999999999999999999999999999999999999999999999986554332 56
Q ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCcHHHHH
Q 006120 202 QIYVNLGIALEGEGMVLSACEYYRESAILCPTHFRALK 239 (660)
Q Consensus 202 ~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~ 239 (660)
.++.++|.++..+|++++|+.+|++++...|+ ++...
T Consensus 84 ~~~~~lg~~~~~~~~~~~A~~~~~kal~~~~~-~~~~~ 120 (127)
T 4gcn_A 84 KAMSRAGNAFQKQNDLSLAVQWFHRSLSEFRD-PELVK 120 (127)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHSCC-HHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHhhCcC-HHHHH
Confidence 78999999999999999999999999998875 44433
No 132
>1xi4_A Clathrin heavy chain; alpha-ZIG-ZAG, beta-propeller, endocytosis-exocyto complex; 7.90A {Bos taurus} SCOP: i.23.1.1 PDB: 1xi5_A 3iyv_A
Probab=99.50 E-value=4.3e-12 Score=147.48 Aligned_cols=250 Identities=14% Similarity=0.077 Sum_probs=169.4
Q ss_pred cCchHHHHhccCchhhHHHHHHHHHHHHhhccCCcCCchHHhhhHHHHHHhCCchHHHHhH---------HHHHHHHHHH
Q 006120 31 PNHGIVFDDTWKIVDDLEILVKRLKAKQAKDGKLKGDNSDAFSDAGWSRELGTSAEISEKR---------VFWEESTHDY 101 (660)
Q Consensus 31 ~~lg~~y~~~~~~~~al~~~~~~~~~a~~~~~~l~~~~~~a~~~~~~~~~l~~~~~~~~~~---------~~l~~~~~~~ 101 (660)
+-....|+..+.+.++++.+++.+-. . .-..++... ..+........+......+ ...|.++...
T Consensus 989 s~~vKaf~~aglp~EaieLLEKivl~---~--s~fs~n~~L-qnlLi~tAIkaD~~Rv~eyI~kLd~~d~~eIA~Iai~l 1062 (1630)
T 1xi4_A 989 SVTVKAFMTADLPNELIELLEKIVLD---N--SVFSEHRNL-QNLLILTAIKADRTRVMEYINRLDNYDAPDIANIAISN 1062 (1630)
T ss_pred HHHHHHHHhCCCHHHHHHHHHHHHcC---C--CcccccHHH-HHHHHHHHHHhChhhHHHHHHHhhhccHHHHHHHHHhC
Confidence 35667888999999999999988842 0 000011111 0111000111122222222 2248888999
Q ss_pred HHHHHHHHHHHHHHhhccCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHH
Q 006120 102 AVFVKELGVLRNRADGARSREEAFDGHMAIGRVLYEHQLFKEALVSFKRACELQPTDVRPHFRAGNCLYVLGRYREAKEE 181 (660)
Q Consensus 102 g~~~~Al~~l~~a~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~ 181 (660)
|.+++|...|+++. ... ..+...+...+++++|.++++++ +.+.+|+.+|.++...|++++|+..
T Consensus 1063 glyEEAf~IYkKa~----~~~------~A~~VLie~i~nldrAiE~Aerv-----n~p~vWsqLAKAql~~G~~kEAIds 1127 (1630)
T 1xi4_A 1063 ELFEEAFAIFRKFD----VNT------SAVQVLIEHIGNLDRAYEFAERC-----NEPAVWSQLAKAQLQKGMVKEAIDS 1127 (1630)
T ss_pred CCHHHHHHHHHHcC----CHH------HHHHHHHHHHhhHHHHHHHHHhc-----CCHHHHHHHHHHHHhCCCHHHHHHH
Confidence 99999999999862 221 11233344788999999998865 6689999999999999999999999
Q ss_pred HHHHHHHhccCCCchhchHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCc---------------------------
Q 006120 182 YLLALEAAETGGNQWAYLLPQIYVNLGIALEGEGMVLSACEYYRESAILCPTH--------------------------- 234 (660)
Q Consensus 182 ~~~al~~~p~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~--------------------------- 234 (660)
|.++ + .+..+..+|.++.+.|++++|+++|..+.+..++.
T Consensus 1128 YiKA-----d--------D~say~eVa~~~~~lGkyEEAIeyL~mArk~~~e~~Idt~LafaYAKl~rleele~fI~~~n 1194 (1630)
T 1xi4_A 1128 YIKA-----D--------DPSSYMEVVQAANTSGNWEELVKYLQMARKKARESYVETELIFALAKTNRLAELEEFINGPN 1194 (1630)
T ss_pred HHhc-----C--------ChHHHHHHHHHHHHcCCHHHHHHHHHHHHhhcccccccHHHHHHHHhhcCHHHHHHHHhCCC
Confidence 9886 2 56888999999999999999999999887665331
Q ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhCCChHHHHHHHHHHHHhCCCCHHHHHHHHHHHH
Q 006120 235 FRALKLLGSALFGVGEYRAAVKALEEAIFIKPDYADAHCDLASALHAMGEDERAIEVFQKAIDLKPGHVDALYNLGGLYM 314 (660)
Q Consensus 235 ~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~La~~~~ 314 (660)
...+..+|..+...|+|++|..+|.++ ..|..+|.+|.++|++++|++++++| .+..+|...+.++.
T Consensus 1195 ~ad~~~iGd~le~eg~YeeA~~~Y~kA--------~ny~rLA~tLvkLge~q~AIEaarKA-----~n~~aWkev~~acv 1261 (1630)
T 1xi4_A 1195 NAHIQQVGDRCYDEKMYDAAKLLYNNV--------SNFGRLASTLVHLGEYQAAVDGARKA-----NSTRTWKEVCFACV 1261 (1630)
T ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHhh--------hHHHHHHHHHHHhCCHHHHHHHHHHh-----CCHHHHHHHHHHHh
Confidence 223455666666666677776666664 35666777777777777777777766 44566766666666
Q ss_pred HhcCCCHHHHHHHHH
Q 006120 315 DLGAGETEEAKKALK 329 (660)
Q Consensus 315 ~~~~g~~~eA~~~~~ 329 (660)
.. |++..|..+..
T Consensus 1262 e~--~Ef~LA~~cgl 1274 (1630)
T 1xi4_A 1262 DG--KEFRLAQMCGL 1274 (1630)
T ss_pred hh--hHHHHHHHHHH
Confidence 66 66666666654
No 133
>1a17_A Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, S helix; 2.45A {Homo sapiens} SCOP: a.118.8.1 PDB: 2bug_A
Probab=99.50 E-value=8e-13 Score=121.14 Aligned_cols=131 Identities=13% Similarity=0.061 Sum_probs=86.1
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhccCCCchhchHHHHH
Q 006120 125 FDGHMAIGRVLYEHQLFKEALVSFKRACELQPTDVRPHFRAGNCLYVLGRYREAKEEYLLALEAAETGGNQWAYLLPQIY 204 (660)
Q Consensus 125 ~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~ 204 (660)
...+..+|..++..|++++|+..|+++++..|.+..++..+|.++...|++++|+..++++++..|. .+.++
T Consensus 13 ~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~~~--------~~~~~ 84 (166)
T 1a17_A 13 AEELKTQANDYFKAKDYENAIKFYSQAIELNPSNAIYYGNRSLAYLRTECYGYALGDATRAIELDKK--------YIKGY 84 (166)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT--------CHHHH
T ss_pred HHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcc--------cHHHH
Confidence 4566667777777777777777777777777777777777777777777777777777777766665 45666
Q ss_pred HHHHHHHHHCCCHHHHHHHHHHHHHhCCCcHHHHHHHH--HHHHHCCCHHHHHHHHHHHHH
Q 006120 205 VNLGIALEGEGMVLSACEYYRESAILCPTHFRALKLLG--SALFGVGEYRAAVKALEEAIF 263 (660)
Q Consensus 205 ~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg--~~~~~~g~~~~A~~~~~~al~ 263 (660)
..+|.++...|++++|+.++++++..+|.+..++..++ ..+...|++++|+..+.++..
T Consensus 85 ~~~a~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~ 145 (166)
T 1a17_A 85 YRRAASNMALGKFRAALRDYETVVKVKPHDKDAKMKYQECNKIVKQKAFERAIAGDEHKRS 145 (166)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHHHcccchHH
Confidence 66666666666666666666666666666666553333 335556666666666665544
No 134
>3sz7_A HSC70 cochaperone (SGT); TPR domain, GET4, GET5, GET3, MDY2, SSA1, SSE1, chaperone regulator; 1.72A {Aspergillus fumigatus}
Probab=99.50 E-value=4.5e-13 Score=123.52 Aligned_cols=115 Identities=19% Similarity=0.164 Sum_probs=91.9
Q ss_pred HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHH
Q 006120 200 LPQIYVNLGIALEGEGMVLSACEYYRESAILCPTHFRALKLLGSALFGVGEYRAAVKALEEAIFIKPDYADAHCDLASAL 279 (660)
Q Consensus 200 ~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~ 279 (660)
.+..++.+|.++...|++++|+.+|+++++++|+++.++.++|.++...|++++|+..|+++++++|+++.+|+++|.++
T Consensus 10 ~a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~ 89 (164)
T 3sz7_A 10 ESDKLKSEGNAAMARKEYSKAIDLYTQALSIAPANPIYLSNRAAAYSASGQHEKAAEDAELATVVDPKYSKAWSRLGLAR 89 (164)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCcCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHH
Confidence 66777888888888888888888888888888888888888888888888888888888888888888888888888888
Q ss_pred HhCCChHHHHHHHHHHHHhCCCCHHHHHHHHHHHH
Q 006120 280 HAMGEDERAIEVFQKAIDLKPGHVDALYNLGGLYM 314 (660)
Q Consensus 280 ~~~g~~~~A~~~~~~al~~~p~~~~a~~~La~~~~ 314 (660)
..+|++++|+.+|+++++++|++..++..++....
T Consensus 90 ~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~l~~~ 124 (164)
T 3sz7_A 90 FDMADYKGAKEAYEKGIEAEGNGGSDAMKRGLETT 124 (164)
T ss_dssp HHTTCHHHHHHHHHHHHHHHSSSCCHHHHHHHHHH
T ss_pred HHccCHHHHHHHHHHHHHhCCCchHHHHHHHHHHH
Confidence 88888888888888888888887776665555443
No 135
>3u3w_A Transcriptional activator PLCR protein; ternary complex, PLCR-PAPR7-DNA, HTH DNA-binding domain, QUO sensing; 2.40A {Bacillus thuringiensis} PDB: 2qfc_A
Probab=99.50 E-value=2.4e-13 Score=138.32 Aligned_cols=170 Identities=15% Similarity=0.007 Sum_probs=141.7
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHhccCCCchhchHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCc------H
Q 006120 162 HFRAGNCLYVLGRYREAKEEYLLALEAAETGGNQWAYLLPQIYVNLGIALEGEGMVLSACEYYRESAILCPTH------F 235 (660)
Q Consensus 162 ~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~------~ 235 (660)
+...+..+...|++++|...++++++..+..+.... ....+..+|.++...|++++|+.++++++.+.+.. .
T Consensus 78 l~~~i~~~~~~~~y~~a~~~~~~~l~~~~~~~~~~~--~~~~~~~l~~~~~~~~~~~~Ai~~~~~al~~~~~~~~~~~~~ 155 (293)
T 3u3w_A 78 FKDQVIMLCKQKRYKEIYNKVWNELKKEEYHPEFQQ--FLQWQYYVAAYVLKKVDYEYCILELKKLLNQQLTGIDVYQNL 155 (293)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHTTCCCCHHHHH--HHHHHHHHHHHHTTSSCHHHHHHHHHHHHHTCCCCSCTTHHH
T ss_pred HHHHHHHHHHHhhHHHHHHHHHHHhccccCChHHHH--HHHHHHHHHHHHHcccCHHHHHHHHHHHHHHhcccccHHHHH
Confidence 444577889999999999999999987654322111 24456679999999999999999999999975432 4
Q ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-------CCCHHHHHHHHHHHHhCCChHHHHHHHHHHHHhCCCC------
Q 006120 236 RALKLLGSALFGVGEYRAAVKALEEAIFIK-------PDYADAHCDLASALHAMGEDERAIEVFQKAIDLKPGH------ 302 (660)
Q Consensus 236 ~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-------p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~------ 302 (660)
.++.++|.+|...|++++|+.+|+++++.. +....++.++|.+|..+|++++|+.++++++++.+..
T Consensus 156 ~~~~~lg~~y~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~nlg~~y~~~~~y~~A~~~~~~al~~~~~~~~~~~~ 235 (293)
T 3u3w_A 156 YIENAIANIYAENGYLKKGIDLFEQILKQLEALHDNEEFDVKVRYNHAKALYLDSRYEESLYQVNKAIEISCRINSMALI 235 (293)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSSCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTBCTTH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcccchhHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHcCcHHHH
Confidence 479999999999999999999999999642 2225688999999999999999999999999986433
Q ss_pred HHHHHHHHHHHHHhcCC-CHHHHHHHHHHHHccc
Q 006120 303 VDALYNLGGLYMDLGAG-ETEEAKKALKEALKMT 335 (660)
Q Consensus 303 ~~a~~~La~~~~~~~~g-~~~eA~~~~~~al~l~ 335 (660)
+.++.++|.++..+ | .+++|+.+|++|+.+.
T Consensus 236 ~~~~~~lg~~~~~~--g~~~~~A~~~~~~Al~i~ 267 (293)
T 3u3w_A 236 GQLYYQRGECLRKL--EYEEAEIEDAYKKASFFF 267 (293)
T ss_dssp HHHHHHHHHHHHHT--TCCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHh--CCcHHHHHHHHHHHHHHH
Confidence 78999999999999 8 5799999999999875
No 136
>3upv_A Heat shock protein STI1; TPR-fold, adaptor protein for HSP70 and HSP90, C-terminal PA HSP70, peptide binding protein; 1.60A {Saccharomyces cerevisiae}
Probab=99.50 E-value=3.4e-13 Score=118.21 Aligned_cols=113 Identities=16% Similarity=0.099 Sum_probs=65.6
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhccCCCchhchHHHHH
Q 006120 125 FDGHMAIGRVLYEHQLFKEALVSFKRACELQPTDVRPHFRAGNCLYVLGRYREAKEEYLLALEAAETGGNQWAYLLPQIY 204 (660)
Q Consensus 125 ~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~ 204 (660)
...+..+|..++..|++++|+..|+++++.+|+++.++.++|.++..+|++++|+..++++++++|. .+.++
T Consensus 4 a~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~--------~~~~~ 75 (126)
T 3upv_A 4 AEEARLEGKEYFTKSDWPNAVKAYTEMIKRAPEDARGYSNRAAALAKLMSFPEAIADCNKAIEKDPN--------FVRAY 75 (126)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT--------CHHHH
T ss_pred HHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCC--------cHHHH
Confidence 3455556666666666666666666666666666666666666666666666666666666655555 44555
Q ss_pred HHHHHHHHHCCCHHHHHHHHHHHHHhC------CCcHHHHHHHHHHH
Q 006120 205 VNLGIALEGEGMVLSACEYYRESAILC------PTHFRALKLLGSAL 245 (660)
Q Consensus 205 ~~la~~~~~~g~~~~A~~~~~~al~~~------p~~~~~~~~lg~~~ 245 (660)
+.+|.++..+|++++|+..|+++++++ |.+..++..++.+.
T Consensus 76 ~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~p~~~~~~~~l~~~~ 122 (126)
T 3upv_A 76 IRKATAQIAVKEYASALETLDAARTKDAEVNNGSSAREIDQLYYKAS 122 (126)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHTTTTHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhCHHHHHHHHHHHHHhCcccCCchhHHHHHHHHHHHH
Confidence 555555555555555555555555555 55555555554443
No 137
>4f3v_A ESX-1 secretion system protein ECCA1; tetratricopeptide repeat, TPR domain, ATPase, protein secret protein transport; 2.00A {Mycobacterium tuberculosis}
Probab=99.50 E-value=2.7e-14 Score=141.96 Aligned_cols=199 Identities=13% Similarity=0.046 Sum_probs=173.3
Q ss_pred HHHHHHHHHHHHHHHHhhccCcHHHHHHHHHH-------HHHHHHcCCHHHHHHHHHHHHHhCCCCH-------------
Q 006120 100 DYAVFVKELGVLRNRADGARSREEAFDGHMAI-------GRVLYEHQLFKEALVSFKRACELQPTDV------------- 159 (660)
Q Consensus 100 ~~g~~~~Al~~l~~a~~~~~~~~~~~~~~~~l-------g~~~~~~g~~~~A~~~~~~al~~~p~~~------------- 159 (660)
..++...|+..|.++....|... ++|..+ +.++...++..+++..+++.+++.|...
T Consensus 18 ~~~d~~~A~~~F~~a~~~dP~~~---Daw~g~~a~g~~~~~~L~~~~r~~~a~~~~~~~l~l~p~~l~a~~~~~g~y~~~ 94 (282)
T 4f3v_A 18 LPMSEARSLDLFTEITNYDESAC---DAWIGRIRCGDTDRVTLFRAWYSRRNFGQLSGSVQISMSTLNARIAIGGLYGDI 94 (282)
T ss_dssp TTTCHHHHHHHHHHHHHHCTTCH---HHHHHHHHTTCCCHHHHHHHHHTGGGTTHHHHTTTCCGGGGCCEEECCTTTCCC
T ss_pred cCCCHHHHHHHHHHHHHhChhhh---HHHHhHHHccCCcHHHHHHHHHHHHHHHHHHHHhcCChhhhhhhhccCCccccc
Confidence 46789999999999999888775 899999 8999999999999999999999876533
Q ss_pred --------HHHHHHHHHHHHcCCHHHHHHHHHHHHHHhccCCCchhchHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC
Q 006120 160 --------RPHFRAGNCLYVLGRYREAKEEYLLALEAAETGGNQWAYLLPQIYVNLGIALEGEGMVLSACEYYRESAILC 231 (660)
Q Consensus 160 --------~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~ 231 (660)
++...++.++...|++++|.+.|..++...|. .. ..+.+|.++.+.+++++|+.+++++....
T Consensus 95 ~~~v~~r~dl~LayA~~L~~~g~y~eA~~~l~~~~~~~p~--------~~-~~~~~a~l~~~~~r~~dA~~~l~~a~~~~ 165 (282)
T 4f3v_A 95 TYPVTSPLAITMGFAACEAAQGNYADAMEALEAAPVAGSE--------HL-VAWMKAVVYGAAERWTDVIDQVKSAGKWP 165 (282)
T ss_dssp EEECSSHHHHHHHHHHHHHHHTCHHHHHHHHTSSCCTTCH--------HH-HHHHHHHHHHHTTCHHHHHHHHTTGGGCS
T ss_pred ccccCCHhHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCc--------hH-HHHHHHHHHHHcCCHHHHHHHHHHhhccC
Confidence 44556889999999999999999999988886 66 99999999999999999999999886653
Q ss_pred CCc--HHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC--CC-CHHHHHHHHHHHHhCCChHHHHHHHHHHHHhCCCCHHHH
Q 006120 232 PTH--FRALKLLGSALFGVGEYRAAVKALEEAIFIK--PD-YADAHCDLASALHAMGEDERAIEVFQKAIDLKPGHVDAL 306 (660)
Q Consensus 232 p~~--~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~--p~-~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~a~ 306 (660)
+.. ..+++++|.++..+|++++|+..|++++.-. |. .+.+++++|.++..+|+.++|...|++++..+|+ ..+.
T Consensus 166 d~~~~~~a~~~LG~al~~LG~~~eAl~~l~~a~~g~~~P~~~~da~~~~glaL~~lGr~deA~~~l~~a~a~~P~-~~~~ 244 (282)
T 4f3v_A 166 DKFLAGAAGVAHGVAAANLALFTEAERRLTEANDSPAGEACARAIAWYLAMARRSQGNESAAVALLEWLQTTHPE-PKVA 244 (282)
T ss_dssp CHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTSTTTTTTHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSCC-HHHH
T ss_pred CcccHHHHHHHHHHHHHHCCCHHHHHHHHHHHhcCCCCccccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCc-HHHH
Confidence 221 4589999999999999999999999998654 55 5679999999999999999999999999999999 7766
Q ss_pred HHHHH
Q 006120 307 YNLGG 311 (660)
Q Consensus 307 ~~La~ 311 (660)
..|..
T Consensus 245 ~aL~~ 249 (282)
T 4f3v_A 245 AALKD 249 (282)
T ss_dssp HHHHC
T ss_pred HHHhC
Confidence 66543
No 138
>2vyi_A SGTA protein; chaperone, TPR repeat, phosphoprotein, tetratricopeptide repeat protein, HOST-virus interaction; 2.4A {Homo sapiens} SCOP: k.38.1.1
Probab=99.50 E-value=7.6e-13 Score=115.53 Aligned_cols=120 Identities=23% Similarity=0.272 Sum_probs=116.1
Q ss_pred HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHH
Q 006120 200 LPQIYVNLGIALEGEGMVLSACEYYRESAILCPTHFRALKLLGSALFGVGEYRAAVKALEEAIFIKPDYADAHCDLASAL 279 (660)
Q Consensus 200 ~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~ 279 (660)
.+..+..+|.++...|++++|+.++++++...|+++.++..+|.++...|++++|+..+++++...|+++.++..+|.++
T Consensus 11 ~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~ 90 (131)
T 2vyi_A 11 EAERLKTEGNEQMKVENFEAAVHFYGKAIELNPANAVYFCNRAAAYSKLGNYAGAVQDCERAICIDPAYSKAYGRMGLAL 90 (131)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHccCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhhchHHHHHHHHHHHhcCccCHHHHHHHHHHH
Confidence 77899999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HhCCChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCCCH
Q 006120 280 HAMGEDERAIEVFQKAIDLKPGHVDALYNLGGLYMDLGAGET 321 (660)
Q Consensus 280 ~~~g~~~~A~~~~~~al~~~p~~~~a~~~La~~~~~~~~g~~ 321 (660)
...|++++|+.+++++++++|++..++..++.++..+ |++
T Consensus 91 ~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~--~~~ 130 (131)
T 2vyi_A 91 SSLNKHVEAVAYYKKALELDPDNETYKSNLKIAELKL--REA 130 (131)
T ss_dssp HHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHH--TTC
T ss_pred HHhCCHHHHHHHHHHHHhcCccchHHHHHHHHHHHHH--hcC
Confidence 9999999999999999999999999999999999988 654
No 139
>2e2e_A Formate-dependent nitrite reductase complex NRFG; TPR, cytochrome C biogenesis, O157:H7 EDL933, formate- nitrite reductase complex, lyase; 2.05A {Escherichia coli}
Probab=99.49 E-value=2.5e-13 Score=126.76 Aligned_cols=126 Identities=15% Similarity=0.156 Sum_probs=76.0
Q ss_pred HHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhccCCCchhchHHHHHHHHHHH-HHHC
Q 006120 136 YEHQLFKEALVSFKRACELQPTDVRPHFRAGNCLYVLGRYREAKEEYLLALEAAETGGNQWAYLLPQIYVNLGIA-LEGE 214 (660)
Q Consensus 136 ~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~la~~-~~~~ 214 (660)
...|++++|+..++++++.+|.++.++..+|.++...|++++|+.+|++++++.|. .+.++..+|.+ +...
T Consensus 21 ~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~--------~~~~~~~la~~l~~~~ 92 (177)
T 2e2e_A 21 ASQQNPEAQLQALQDKIRANPQNSEQWALLGEYYLWQNDYSNSLLAYRQALQLRGE--------NAELYAALATVLYYQA 92 (177)
T ss_dssp C-----CCCCHHHHHHHHHCCSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHCS--------CHHHHHHHHHHHHHHT
T ss_pred hhccCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCC--------CHHHHHHHHHHHHHhc
Confidence 34556666666666666666666666666666666666666666666666666665 45556666666 5556
Q ss_pred CCH--HHHHHHHHHHHHhCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCH
Q 006120 215 GMV--LSACEYYRESAILCPTHFRALKLLGSALFGVGEYRAAVKALEEAIFIKPDYA 269 (660)
Q Consensus 215 g~~--~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~ 269 (660)
|++ ++|+.+++++++.+|++..++..+|.++...|++++|+..+++++.+.|++.
T Consensus 93 ~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~ 149 (177)
T 2e2e_A 93 SQHMTAQTRAMIDKALALDSNEITALMLLASDAFMQANYAQAIELWQKVMDLNSPRI 149 (177)
T ss_dssp TTCCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTCCTTS
T ss_pred CCcchHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcccHHHHHHHHHHHHhhCCCCc
Confidence 665 6666666666666666666666666666666666666666666666665543
No 140
>1kt0_A FKBP51, 51 kDa FK506-binding protein; FKBP-like ppiase, TPR repeats, isomerase; 2.70A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 d.26.1.1 PDB: 1kt1_A 3o5d_A
Probab=99.49 E-value=5.7e-14 Score=152.46 Aligned_cols=152 Identities=18% Similarity=0.185 Sum_probs=136.5
Q ss_pred HcCCHHHHHHHHHHHHHHhccCCCchhchHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCc---------------H
Q 006120 171 VLGRYREAKEEYLLALEAAETGGNQWAYLLPQIYVNLGIALEGEGMVLSACEYYRESAILCPTH---------------F 235 (660)
Q Consensus 171 ~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~---------------~ 235 (660)
.++++++|+..++.+++..|. .+..+..+|..+...|++++|+..|++++++.|.+ .
T Consensus 246 ~l~~~~~A~~~~~~~~~~~~~--------~a~~~~~~G~~~~~~g~~~~A~~~y~~Al~~~p~~~~~~~~~~~~~~~~~~ 317 (457)
T 1kt0_A 246 TLKSFEKAKESWEMDTKEKLE--------QAAIVKEKGTVYFKGGKYMQAVIQYGKIVSWLEMEYGLSEKESKASESFLL 317 (457)
T ss_dssp EEEEEECCCCGGGSCHHHHHH--------HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTCCSCCHHHHHHHHHHHH
T ss_pred hhhhcccCcchhhcCHHHHHH--------HHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHhcccccCChHHHHHHHHHHH
Confidence 456777888888888888888 89999999999999999999999999999999998 7
Q ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhCCChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH
Q 006120 236 RALKLLGSALFGVGEYRAAVKALEEAIFIKPDYADAHCDLASALHAMGEDERAIEVFQKAIDLKPGHVDALYNLGGLYMD 315 (660)
Q Consensus 236 ~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~La~~~~~ 315 (660)
.++.++|.++..+|++++|+..|+++++++|++..+|+++|.+|..+|++++|+..|+++++++|++..++..++.++..
T Consensus 318 ~~~~nla~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~~g~a~~~~g~~~~A~~~~~~al~l~P~~~~a~~~l~~~~~~ 397 (457)
T 1kt0_A 318 AAFLNLAMCYLKLREYTKAVECCDKALGLDSANEKGLYRRGEAQLLMNEFESAKGDFEKVLEVNPQNKAARLQISMCQKK 397 (457)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTC----CHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH
Confidence 89999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hcCCCHHHHHHH-HHHHH
Q 006120 316 LGAGETEEAKKA-LKEAL 332 (660)
Q Consensus 316 ~~~g~~~eA~~~-~~~al 332 (660)
+ +++++|... +++.+
T Consensus 398 ~--~~~~~a~~~~~~~~f 413 (457)
T 1kt0_A 398 A--KEHNERDRRIYANMF 413 (457)
T ss_dssp H--HHHHHHHHHHHHHC-
T ss_pred H--HHHHHHHHHHHHHHH
Confidence 9 888887654 44443
No 141
>3gw4_A Uncharacterized protein; structural genomics, PSI-2, protein structure initiative, no structural genomics consortium, NESG, DRR162B; 2.49A {Deinococcus radiodurans R1}
Probab=99.49 E-value=9.5e-13 Score=125.12 Aligned_cols=161 Identities=17% Similarity=0.160 Sum_probs=111.8
Q ss_pred HHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhccCCCchhchHHHHHHHHHHHHHHCC
Q 006120 136 YEHQLFKEALVSFKRACELQPTDVRPHFRAGNCLYVLGRYREAKEEYLLALEAAETGGNQWAYLLPQIYVNLGIALEGEG 215 (660)
Q Consensus 136 ~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~la~~~~~~g 215 (660)
+..|++++|...++......+..+.++..+|.++...|++++|+..+++++.+....+.... ...++.++|.++...|
T Consensus 3 ~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~--~~~~~~~l~~~~~~~g 80 (203)
T 3gw4_A 3 FEAHDYALAERQAQALLAHPATASGARFMLGYVYAFMDRFDEARASFQALQQQAQKSGDHTA--EHRALHQVGMVERMAG 80 (203)
T ss_dssp ----CHHHHHHHHHHHHTSTTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCHHH--HHHHHHHHHHHHHHTT
T ss_pred cccccHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHcCCcHH--HHHHHHHHHHHHHHcC
Confidence 45788888888555444433356778888888888888888888888888887665544333 6777888888888888
Q ss_pred CHHHHHHHHHHHHHh---CCC----cHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCC--CC----HHHHHHHHHHHHhC
Q 006120 216 MVLSACEYYRESAIL---CPT----HFRALKLLGSALFGVGEYRAAVKALEEAIFIKP--DY----ADAHCDLASALHAM 282 (660)
Q Consensus 216 ~~~~A~~~~~~al~~---~p~----~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p--~~----~~~~~~la~~~~~~ 282 (660)
++++|+.++++++.+ .++ ...++.++|.++...|++++|+.++++++.+.+ .+ ..++.++|.++...
T Consensus 81 ~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~ 160 (203)
T 3gw4_A 81 NWDAARRCFLEERELLASLPEDPLAASANAYEVATVALHFGDLAGARQEYEKSLVYAQQADDQVAIACAFRGLGDLAQQE 160 (203)
T ss_dssp CHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHT
T ss_pred CHHHHHHHHHHHHHHHHHcCccHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHC
Confidence 888888888888776 332 245677777888778888888888877776532 11 23456677777777
Q ss_pred CChHHHHHHHHHHHHh
Q 006120 283 GEDERAIEVFQKAIDL 298 (660)
Q Consensus 283 g~~~~A~~~~~~al~~ 298 (660)
|++++|+.++++++++
T Consensus 161 g~~~~A~~~~~~al~~ 176 (203)
T 3gw4_A 161 KNLLEAQQHWLRARDI 176 (203)
T ss_dssp TCHHHHHHHHHHHHHH
T ss_pred cCHHHHHHHHHHHHHH
Confidence 7777777777777665
No 142
>2lni_A Stress-induced-phosphoprotein 1; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, chaperone; NMR {Homo sapiens}
Probab=99.48 E-value=6.8e-13 Score=116.58 Aligned_cols=117 Identities=25% Similarity=0.274 Sum_probs=113.5
Q ss_pred HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHH
Q 006120 200 LPQIYVNLGIALEGEGMVLSACEYYRESAILCPTHFRALKLLGSALFGVGEYRAAVKALEEAIFIKPDYADAHCDLASAL 279 (660)
Q Consensus 200 ~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~ 279 (660)
....+..+|.++...|++++|+.++++++...|.+..++..+|.++...|++++|+..++++++..|++..++.++|.++
T Consensus 15 ~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~ 94 (133)
T 2lni_A 15 LALMVKNKGNECFQKGDYPQAMKHYTEAIKRNPKDAKLYSNRAACYTKLLEFQLALKDCEECIQLEPTFIKGYTRKAAAL 94 (133)
T ss_dssp HHHHHHHHHHHHHHTTCSHHHHHHHHHHHTTCTTCHHHHHHHHHHHTTTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCchHHHHHHHHHH
Confidence 78999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HhCCChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHh
Q 006120 280 HAMGEDERAIEVFQKAIDLKPGHVDALYNLGGLYMDL 316 (660)
Q Consensus 280 ~~~g~~~~A~~~~~~al~~~p~~~~a~~~La~~~~~~ 316 (660)
..+|++++|+.+++++++.+|.+..++..++.++..+
T Consensus 95 ~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~ 131 (133)
T 2lni_A 95 EAMKDYTKAMDVYQKALDLDSSCKEAADGYQRCMMAQ 131 (133)
T ss_dssp HHTTCHHHHHHHHHHHHHHCGGGTHHHHHHHHHHHHH
T ss_pred HHHhhHHHHHHHHHHHHHhCCCchHHHHHHHHHHHHh
Confidence 9999999999999999999999999999999999877
No 143
>2fbn_A 70 kDa peptidylprolyl isomerase, putative; sulfur SAD, PFL2275C, TPR-containing domain, structural genomics; 1.63A {Plasmodium falciparum} SCOP: a.118.8.1
Probab=99.47 E-value=4.4e-14 Score=134.75 Aligned_cols=160 Identities=14% Similarity=0.029 Sum_probs=118.3
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhccCCCchh--------chHH
Q 006120 130 AIGRVLYEHQLFKEALVSFKRACELQPTDVRPHFRAGNCLYVLGRYREAKEEYLLALEAAETGGNQWA--------YLLP 201 (660)
Q Consensus 130 ~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~--------~~~~ 201 (660)
..+......|++++|.+.+....+..+..+..+..+|..+...|++++|+..|.+++++.|....... .+..
T Consensus 9 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~ 88 (198)
T 2fbn_A 9 HHSSGRENLYFQGAKKSIYDYTDEEKVQSAFDIKEEGNEFFKKNEINEAIVKYKEALDFFIHTEEWDDQILLDKKKNIEI 88 (198)
T ss_dssp -------------CCCSGGGCCHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTTTCTTCCCHHHHHHHHHHHH
T ss_pred chhhhhhhhhhccccCchhhCCHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhcccccchhhHHHHHHHHHH
Confidence 34445555566666666665555555555666677777777777777777777777776665432110 0024
Q ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHh
Q 006120 202 QIYVNLGIALEGEGMVLSACEYYRESAILCPTHFRALKLLGSALFGVGEYRAAVKALEEAIFIKPDYADAHCDLASALHA 281 (660)
Q Consensus 202 ~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~ 281 (660)
.++.++|.++..+|++++|+.++++++.++|++..+++.+|.++...|++++|+..|+++++++|++..++..++.++..
T Consensus 89 ~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~ 168 (198)
T 2fbn_A 89 SCNLNLATCYNKNKDYPKAIDHASKVLKIDKNNVKALYKLGVANMYFGFLEEAKENLYKAASLNPNNLDIRNSYELCVNK 168 (198)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHcccHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHH
Confidence 78999999999999999999999999999999999999999999999999999999999999999999999999999998
Q ss_pred CCChHHHH
Q 006120 282 MGEDERAI 289 (660)
Q Consensus 282 ~g~~~~A~ 289 (660)
+++..++.
T Consensus 169 ~~~~~~~~ 176 (198)
T 2fbn_A 169 LKEARKKD 176 (198)
T ss_dssp HHHHHC--
T ss_pred HHHHHHHH
Confidence 88877766
No 144
>2c2l_A CHIP, carboxy terminus of HSP70-interacting protein; chaperone, E3 ligase, ubiquitinylation, TPR, heat-shock protein complex; 3.3A {Mus musculus} SCOP: a.118.8.1 g.44.1.2
Probab=99.45 E-value=1.9e-13 Score=138.26 Aligned_cols=168 Identities=15% Similarity=0.069 Sum_probs=138.5
Q ss_pred CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhccCCCchhchHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCcH
Q 006120 156 PTDVRPHFRAGNCLYVLGRYREAKEEYLLALEAAETGGNQWAYLLPQIYVNLGIALEGEGMVLSACEYYRESAILCPTHF 235 (660)
Q Consensus 156 p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~ 235 (660)
|..+..+..+|..+...|++++|+..|+++++.+|. .+.++.++|.++..+|++++|+..++++++++|++.
T Consensus 1 p~~a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~--------~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~ 72 (281)
T 2c2l_A 1 SPSAQELKEQGNRLFVGRKYPEAAACYGRAITRNPL--------VAVYYTNRALCYLKMQQPEQALADCRRALELDGQSV 72 (281)
T ss_dssp CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSC--------CHHHHHHHHHHHHHTTCHHHHHHHHHHHTTSCTTCH
T ss_pred ChhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCc--------cHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCCH
Confidence 567889999999999999999999999999999998 788999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhCCChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH
Q 006120 236 RALKLLGSALFGVGEYRAAVKALEEAIFIKPDYADAHCDLASALHAMGEDERAIEVFQKAIDLKPGHVDALYNLGGLYMD 315 (660)
Q Consensus 236 ~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~La~~~~~ 315 (660)
.+++.+|.++..+|++++|+..|+++++++|++...+........ +..++...........|.+......++.++
T Consensus 73 ~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~i~~~l~~l~-- 147 (281)
T 2c2l_A 73 KAHFFLGQCQLEMESYDEAIANLQRAYSLAKEQRLNFGDDIPSAL---RIAKKKRWNSIEERRIHQESELHSYLTRLI-- 147 (281)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCCCSHHHHHH---HHHHHHHHHHHHHTCCCCCCHHHHHHHHHH--
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCccchhhHHHHHHHHH---HHHHHHHHHHHHHHHHhhhHHHHHHHHHHH--
Confidence 999999999999999999999999999998866322221222211 122333333344456777788888887776
Q ss_pred hcCCCHHHHHHHHHHHHcccCCh
Q 006120 316 LGAGETEEAKKALKEALKMTNRV 338 (660)
Q Consensus 316 ~~~g~~~eA~~~~~~al~l~p~~ 338 (660)
. |++++|++.++++++++|..
T Consensus 148 ~--~~~~~A~~~~~~al~~~p~~ 168 (281)
T 2c2l_A 148 A--AERERELEECQRNHEGHEDD 168 (281)
T ss_dssp H--HHHHHHHTTTSGGGTTTSCH
T ss_pred H--HHHHHHHHHHHhhhccccch
Confidence 4 89999999999999999864
No 145
>3sz7_A HSC70 cochaperone (SGT); TPR domain, GET4, GET5, GET3, MDY2, SSA1, SSE1, chaperone regulator; 1.72A {Aspergillus fumigatus}
Probab=99.45 E-value=1.4e-12 Score=120.09 Aligned_cols=108 Identities=24% Similarity=0.236 Sum_probs=102.9
Q ss_pred CCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhCCChHHHHHHHHHHHHhCCCCHHHHHHHH
Q 006120 231 CPTHFRALKLLGSALFGVGEYRAAVKALEEAIFIKPDYADAHCDLASALHAMGEDERAIEVFQKAIDLKPGHVDALYNLG 310 (660)
Q Consensus 231 ~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~La 310 (660)
.+.++..+..+|.++...|++++|+..|+++++++|+++.+|.++|.++..+|++++|+.+|+++++++|+++.+++++|
T Consensus 7 ~~~~a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg 86 (164)
T 3sz7_A 7 PTPESDKLKSEGNAAMARKEYSKAIDLYTQALSIAPANPIYLSNRAAAYSASGQHEKAAEDAELATVVDPKYSKAWSRLG 86 (164)
T ss_dssp CCHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHH
T ss_pred hhhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCcCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHH
Confidence 34567899999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHhcCCCHHHHHHHHHHHHcccCChhH
Q 006120 311 GLYMDLGAGETEEAKKALKEALKMTNRVEL 340 (660)
Q Consensus 311 ~~~~~~~~g~~~eA~~~~~~al~l~p~~~~ 340 (660)
.++..+ |++++|+.+|+++++++|+...
T Consensus 87 ~~~~~~--g~~~~A~~~~~~al~~~p~~~~ 114 (164)
T 3sz7_A 87 LARFDM--ADYKGAKEAYEKGIEAEGNGGS 114 (164)
T ss_dssp HHHHHT--TCHHHHHHHHHHHHHHHSSSCC
T ss_pred HHHHHc--cCHHHHHHHHHHHHHhCCCchH
Confidence 999999 9999999999999999987543
No 146
>2lni_A Stress-induced-phosphoprotein 1; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, chaperone; NMR {Homo sapiens}
Probab=99.45 E-value=7.5e-13 Score=116.27 Aligned_cols=116 Identities=15% Similarity=0.123 Sum_probs=58.4
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhccCCCchhchHHHHH
Q 006120 125 FDGHMAIGRVLYEHQLFKEALVSFKRACELQPTDVRPHFRAGNCLYVLGRYREAKEEYLLALEAAETGGNQWAYLLPQIY 204 (660)
Q Consensus 125 ~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~ 204 (660)
..+++.+|..+...|++++|+..|+++++..|.+..++..+|.++...|++++|+..++++++..|. ...++
T Consensus 16 ~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~--------~~~~~ 87 (133)
T 2lni_A 16 ALMVKNKGNECFQKGDYPQAMKHYTEAIKRNPKDAKLYSNRAACYTKLLEFQLALKDCEECIQLEPT--------FIKGY 87 (133)
T ss_dssp HHHHHHHHHHHHHTTCSHHHHHHHHHHHTTCTTCHHHHHHHHHHHTTTTCHHHHHHHHHHHHHHCTT--------CHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCC--------chHHH
Confidence 3445555555555555555555555555555555555555555555555555555555555554444 34444
Q ss_pred HHHHHHHHHCCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHC
Q 006120 205 VNLGIALEGEGMVLSACEYYRESAILCPTHFRALKLLGSALFGV 248 (660)
Q Consensus 205 ~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~ 248 (660)
..+|.++...|++++|+.++++++..+|.+..++..++.++..+
T Consensus 88 ~~la~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~ 131 (133)
T 2lni_A 88 TRKAAALEAMKDYTKAMDVYQKALDLDSSCKEAADGYQRCMMAQ 131 (133)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHCGGGTHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhhHHHHHHHHHHHHHhCCCchHHHHHHHHHHHHh
Confidence 44555555555555555555555544444444444444444443
No 147
>2vyi_A SGTA protein; chaperone, TPR repeat, phosphoprotein, tetratricopeptide repeat protein, HOST-virus interaction; 2.4A {Homo sapiens} SCOP: k.38.1.1
Probab=99.45 E-value=2.2e-12 Score=112.58 Aligned_cols=120 Identities=20% Similarity=0.233 Sum_probs=68.6
Q ss_pred HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhccCCCchhchHHH
Q 006120 123 EAFDGHMAIGRVLYEHQLFKEALVSFKRACELQPTDVRPHFRAGNCLYVLGRYREAKEEYLLALEAAETGGNQWAYLLPQ 202 (660)
Q Consensus 123 ~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~ 202 (660)
.....+..+|..+...|++++|+..|+++++..|+++.++..+|.++...|++++|+..++++++..|. .+.
T Consensus 10 ~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~--------~~~ 81 (131)
T 2vyi_A 10 AEAERLKTEGNEQMKVENFEAAVHFYGKAIELNPANAVYFCNRAAAYSKLGNYAGAVQDCERAICIDPA--------YSK 81 (131)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT--------CHH
T ss_pred hhhHHHHHHHHHHHHccCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhhchHHHHHHHHHHHhcCcc--------CHH
Confidence 344555566666666666666666666666666655555556666665566666665555555555554 344
Q ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHCCC
Q 006120 203 IYVNLGIALEGEGMVLSACEYYRESAILCPTHFRALKLLGSALFGVGE 250 (660)
Q Consensus 203 ~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~ 250 (660)
++..+|.++...|++++|+.+++++++..|++..++..++.++...|+
T Consensus 82 ~~~~~~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~ 129 (131)
T 2vyi_A 82 AYGRMGLALSSLNKHVEAVAYYKKALELDPDNETYKSNLKIAELKLRE 129 (131)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHhCCHHHHHHHHHHHHhcCccchHHHHHHHHHHHHHhc
Confidence 555555555555555555555555555555555555555555555444
No 148
>1b89_A Protein (clathrin heavy chain); triskelion, coated vesicles, endocytosis, SELF- assembly, alpha-alpha superhelix; 2.60A {Bos taurus} SCOP: a.118.1.3
Probab=99.45 E-value=1.4e-13 Score=144.63 Aligned_cols=242 Identities=17% Similarity=0.103 Sum_probs=124.1
Q ss_pred hhccCchHHHHhccCchhhHHHHHHHHHHHHhhccCCcCCchHHhhhHHHHHHhCCchHHHHhHHHHHHHHHHHHHHHHH
Q 006120 28 AVSPNHGIVFDDTWKIVDDLEILVKRLKAKQAKDGKLKGDNSDAFSDAGWSRELGTSAEISEKRVFWEESTHDYAVFVKE 107 (660)
Q Consensus 28 ~~~~~lg~~y~~~~~~~~al~~~~~~~~~a~~~~~~l~~~~~~a~~~~~~~~~l~~~~~~~~~~~~l~~~~~~~g~~~~A 107 (660)
.+|..+|..+.+.+++.+|++.+.+.-. +. .+...+..+...|++++|
T Consensus 33 ~vWs~La~A~l~~g~~~eAIdsfika~D-------------~~-------------------~y~~V~~~ae~~g~~EeA 80 (449)
T 1b89_A 33 AVWSQLAKAQLQKGMVKEAIDSYIKADD-------------PS-------------------SYMEVVQAANTSGNWEEL 80 (449)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHcCCC-------------HH-------------------HHHHHHHHHHhCCCHHHH
Confidence 4777999999999999999999876422 11 122234456678999999
Q ss_pred HHHHHHHHhhccCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 006120 108 LGVLRNRADGARSREEAFDGHMAIGRVLYEHQLFKEALVSFKRACELQPTDVRPHFRAGNCLYVLGRYREAKEEYLLALE 187 (660)
Q Consensus 108 l~~l~~a~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~ 187 (660)
+..++.+.+..++ ..+...++.+|.+.|++.++..+++. | +..+|..+|..+...|+|++|..+|.++
T Consensus 81 i~yl~~ark~~~~----~~i~~~Li~~Y~Klg~l~e~e~f~~~-----p-n~~a~~~IGd~~~~~g~yeeA~~~Y~~a-- 148 (449)
T 1b89_A 81 VKYLQMARKKARE----SYVETELIFALAKTNRLAELEEFING-----P-NNAHIQQVGDRCYDEKMYDAAKLLYNNV-- 148 (449)
T ss_dssp --------------------------------CHHHHTTTTTC-----C-----------------CTTTHHHHHHHT--
T ss_pred HHHHHHHHHhCcc----chhHHHHHHHHHHhCCHHHHHHHHcC-----C-cHHHHHHHHHHHHHcCCHHHHHHHHHHh--
Confidence 9988888774332 35677899999999999999888853 4 3469999999999999999999999866
Q ss_pred HhccCCCchhchHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCC
Q 006120 188 AAETGGNQWAYLLPQIYVNLGIALEGEGMVLSACEYYRESAILCPTHFRALKLLGSALFGVGEYRAAVKALEEAIFIKPD 267 (660)
Q Consensus 188 ~~p~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~ 267 (660)
..+..+|.++.++|++++|++.++++ .++.+|...+.++...|+++.|..+... +...
T Consensus 149 --------------~n~~~LA~~L~~Lg~yq~AVea~~KA-----~~~~~Wk~v~~aCv~~~ef~lA~~~~l~-L~~~-- 206 (449)
T 1b89_A 149 --------------SNFGRLASTLVHLGEYQAAVDGARKA-----NSTRTWKEVCFACVDGKEFRLAQMCGLH-IVVH-- 206 (449)
T ss_dssp --------------TCHHHHHHHHHTTTCHHHHHHHHHHH-----TCHHHHHHHHHHHHHTTCHHHHHHTTTT-TTTC--
T ss_pred --------------hhHHHHHHHHHHhccHHHHHHHHHHc-----CCchhHHHHHHHHHHcCcHHHHHHHHHH-HHhC--
Confidence 23678999999999999999999998 5789999999999999999999777665 3344
Q ss_pred CHHHHHHHHHHHHhCCChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHcccC
Q 006120 268 YADAHCDLASALHAMGEDERAIEVFQKAIDLKPGHVDALYNLGGLYMDLGAGETEEAKKALKEALKMTN 336 (660)
Q Consensus 268 ~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~La~~~~~~~~g~~~eA~~~~~~al~l~p 336 (660)
+.-...+..+|.+.|++++|+.++++++.+++.+...+..||.+|.+-..++..+.++.|...+.+.|
T Consensus 207 -ad~l~~lv~~Yek~G~~eEai~lLe~aL~le~ah~~~ftel~il~~ky~p~k~~ehl~~~~~~ini~k 274 (449)
T 1b89_A 207 -ADELEELINYYQDRGYFEELITMLEAALGLERAHMGMFTELAILYSKFKPQKMREHLELFWSRVNIPK 274 (449)
T ss_dssp -HHHHHHHHHHHHHTTCHHHHHHHHHHHTTSTTCCHHHHHHHHHHHHTTCHHHHHHHHHHHSTTSCHHH
T ss_pred -HhhHHHHHHHHHHCCCHHHHHHHHHHHhCCcHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHhcCcH
Confidence 44455788999999999999999999999999999999999999987633555666666665555554
No 149
>1na0_A Designed protein CTPR3; de novo protein; HET: IPT; 1.60A {Unidentified} SCOP: k.38.1.1 PDB: 2wqh_A 3kd7_A
Probab=99.45 E-value=5.9e-12 Score=108.76 Aligned_cols=117 Identities=32% Similarity=0.474 Sum_probs=112.2
Q ss_pred HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHH
Q 006120 200 LPQIYVNLGIALEGEGMVLSACEYYRESAILCPTHFRALKLLGSALFGVGEYRAAVKALEEAIFIKPDYADAHCDLASAL 279 (660)
Q Consensus 200 ~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~ 279 (660)
...++..+|.++...|++++|+..+++++...|.+..++..+|.++...|++++|+..+++++...|.+..++..+|.++
T Consensus 8 ~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~ 87 (125)
T 1na0_A 8 SAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAWYNLGNAY 87 (125)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCcHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCccHHHHHHHHHHH
Confidence 57889999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HhCCChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHh
Q 006120 280 HAMGEDERAIEVFQKAIDLKPGHVDALYNLGGLYMDL 316 (660)
Q Consensus 280 ~~~g~~~~A~~~~~~al~~~p~~~~a~~~La~~~~~~ 316 (660)
...|++++|+.+++++++.+|+++.++..++.++...
T Consensus 88 ~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 124 (125)
T 1na0_A 88 YKQGDYDEAIEYYQKALELDPNNAEAKQNLGNAKQKQ 124 (125)
T ss_dssp HHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHH
T ss_pred HHhcCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHhc
Confidence 9999999999999999999999999999999998765
No 150
>1kt0_A FKBP51, 51 kDa FK506-binding protein; FKBP-like ppiase, TPR repeats, isomerase; 2.70A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 d.26.1.1 PDB: 1kt1_A 3o5d_A
Probab=99.44 E-value=6.8e-14 Score=151.84 Aligned_cols=154 Identities=16% Similarity=0.124 Sum_probs=127.4
Q ss_pred cCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhccCCCc-------hhchHHHHHHHHHHH
Q 006120 138 HQLFKEALVSFKRACELQPTDVRPHFRAGNCLYVLGRYREAKEEYLLALEAAETGGNQ-------WAYLLPQIYVNLGIA 210 (660)
Q Consensus 138 ~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~-------~~~~~~~~~~~la~~ 210 (660)
.+++++|+..|+.+++..|..+..+..+|.++...|++++|+..|++++++.|..... .......++.++|.+
T Consensus 247 l~~~~~A~~~~~~~~~~~~~~a~~~~~~G~~~~~~g~~~~A~~~y~~Al~~~p~~~~~~~~~~~~~~~~~~~~~~nla~~ 326 (457)
T 1kt0_A 247 LKSFEKAKESWEMDTKEKLEQAAIVKEKGTVYFKGGKYMQAVIQYGKIVSWLEMEYGLSEKESKASESFLLAAFLNLAMC 326 (457)
T ss_dssp EEEEECCCCGGGSCHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTCCSCCHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhhcccCcchhhcCHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHhcccccCChHHHHHHHHHHHHHHHHHHHH
Confidence 4456667777777777777777788888888888888888888888888887764210 000137899999999
Q ss_pred HHHCCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhCCChHHHHH
Q 006120 211 LEGEGMVLSACEYYRESAILCPTHFRALKLLGSALFGVGEYRAAVKALEEAIFIKPDYADAHCDLASALHAMGEDERAIE 290 (660)
Q Consensus 211 ~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~ 290 (660)
+..+|++++|+.+|+++++++|++..+++++|.++..+|++++|+..|+++++++|++..++.+++.++..++++++|..
T Consensus 327 ~~~~g~~~~A~~~~~~al~~~p~~~~a~~~~g~a~~~~g~~~~A~~~~~~al~l~P~~~~a~~~l~~~~~~~~~~~~a~~ 406 (457)
T 1kt0_A 327 YLKLREYTKAVECCDKALGLDSANEKGLYRRGEAQLLMNEFESAKGDFEKVLEVNPQNKAARLQISMCQKKAKEHNERDR 406 (457)
T ss_dssp HHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTC----CHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHhcCHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999988875
Q ss_pred H
Q 006120 291 V 291 (660)
Q Consensus 291 ~ 291 (660)
.
T Consensus 407 ~ 407 (457)
T 1kt0_A 407 R 407 (457)
T ss_dssp H
T ss_pred H
Confidence 4
No 151
>1elw_A TPR1-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, HSP70, protein binding, chaperone; 1.60A {Homo sapiens} SCOP: a.118.8.1
Probab=99.43 E-value=5.7e-12 Score=107.78 Aligned_cols=114 Identities=18% Similarity=0.176 Sum_probs=106.2
Q ss_pred HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHH
Q 006120 200 LPQIYVNLGIALEGEGMVLSACEYYRESAILCPTHFRALKLLGSALFGVGEYRAAVKALEEAIFIKPDYADAHCDLASAL 279 (660)
Q Consensus 200 ~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~ 279 (660)
.+..+..+|..+...|++++|+..+++++...|.++.++..+|.++...|++++|+..+++++...|+++.++..+|.++
T Consensus 3 ~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~ 82 (118)
T 1elw_A 3 QVNELKEKGNKALSVGNIDDALQCYSEAIKLDPHNHVLYSNRSAAYAKKGDYQKAYEDGCKTVDLKPDWGKGYSRKAAAL 82 (118)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHcccHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHhhccHHHHHHHHHHHHHhCcccHHHHHHHHHHH
Confidence 56788899999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HhCCChHHHHHHHHHHHHhCCCCHHHHHHHHHHH
Q 006120 280 HAMGEDERAIEVFQKAIDLKPGHVDALYNLGGLY 313 (660)
Q Consensus 280 ~~~g~~~~A~~~~~~al~~~p~~~~a~~~La~~~ 313 (660)
...|++++|+..++++++.+|+++.++..++.+.
T Consensus 83 ~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~ 116 (118)
T 1elw_A 83 EFLNRFEEAKRTYEEGLKHEANNPQLKEGLQNME 116 (118)
T ss_dssp HHTTCHHHHHHHHHHHHTTCTTCHHHHHHHHHHH
T ss_pred HHHhhHHHHHHHHHHHHHcCCCCHHHHHHHHHhh
Confidence 9999999999999999999999999998888765
No 152
>2hr2_A Hypothetical protein; alpha-alpha superhelix fold, structural genomics, joint CENT structural genomics, JCSG, protein structure initiative; 2.54A {Chlorobium tepidum} SCOP: a.118.8.8
Probab=99.43 E-value=4e-13 Score=121.25 Aligned_cols=114 Identities=19% Similarity=0.091 Sum_probs=61.1
Q ss_pred HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHH
Q 006120 200 LPQIYVNLGIALEGEGMVLSACEYYRESAILCPTHFRALKLLGSALFGVGEYRAAVKALEEAIFIKPDYADAHCDLASAL 279 (660)
Q Consensus 200 ~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~ 279 (660)
.+..+.++|..+...|++++|+..|+++++++|+++.. +++...|.+..+|.++|.++
T Consensus 10 ~a~~~~~~G~~l~~~g~~eeAi~~Y~kAL~l~p~~~~~----------------------~a~~~~~~~a~a~~n~g~al 67 (159)
T 2hr2_A 10 GAYLALSDAQRQLVAGEYDEAAANCRRAMEISHTMPPE----------------------EAFDHAGFDAFCHAGLAEAL 67 (159)
T ss_dssp HHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSCTT----------------------SCCCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCCCCcch----------------------hhhhhccchHHHHHHHHHHH
Confidence 44566777777777777777777777777777762110 00000011122445555555
Q ss_pred HhCCChHHHHHHHHHHHHh-------CCCCHHHH----HHHHHHHHHhcCCCHHHHHHHHHHHHcccCC
Q 006120 280 HAMGEDERAIEVFQKAIDL-------KPGHVDAL----YNLGGLYMDLGAGETEEAKKALKEALKMTNR 337 (660)
Q Consensus 280 ~~~g~~~~A~~~~~~al~~-------~p~~~~a~----~~La~~~~~~~~g~~~eA~~~~~~al~l~p~ 337 (660)
..+|++++|+..+++++++ +|++..+| +++|.++..+ |++++|+..|+++++++|+
T Consensus 68 ~~Lgr~~eAl~~~~kAL~l~n~~~e~~pd~~~A~~~~~~~rG~aL~~l--gr~eEAl~~y~kAlel~p~ 134 (159)
T 2hr2_A 68 AGLRSFDEALHSADKALHYFNRRGELNQDEGKLWISAVYSRALALDGL--GRGAEAMPEFKKVVEMIEE 134 (159)
T ss_dssp HHTTCHHHHHHHHHHHHHHHHHHCCTTSTHHHHHHHHHHHHHHHHHHT--TCHHHHHHHHHHHHHHHHH
T ss_pred HHCCCHHHHHHHHHHHHHhhhccccCCCchHHHHHHHHHhHHHHHHHC--CCHHHHHHHHHHHHhcCCC
Confidence 5555555555555555555 55555555 5555555555 5555555555555555543
No 153
>2hr2_A Hypothetical protein; alpha-alpha superhelix fold, structural genomics, joint CENT structural genomics, JCSG, protein structure initiative; 2.54A {Chlorobium tepidum} SCOP: a.118.8.8
Probab=99.43 E-value=1.7e-12 Score=117.07 Aligned_cols=79 Identities=18% Similarity=0.228 Sum_probs=62.4
Q ss_pred cHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh-------CCCCHHHH----HHHHHHHHhCCChHHHHHHHHHHHHhCCCC
Q 006120 234 HFRALKLLGSALFGVGEYRAAVKALEEAIFI-------KPDYADAH----CDLASALHAMGEDERAIEVFQKAIDLKPGH 302 (660)
Q Consensus 234 ~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~-------~p~~~~~~----~~la~~~~~~g~~~~A~~~~~~al~~~p~~ 302 (660)
++.+|.++|.++..+|++++|+..++++|++ +|++..+| +++|.++..+|++++|+..|+++++++|++
T Consensus 56 ~a~a~~n~g~al~~Lgr~~eAl~~~~kAL~l~n~~~e~~pd~~~A~~~~~~~rG~aL~~lgr~eEAl~~y~kAlel~p~d 135 (159)
T 2hr2_A 56 DAFCHAGLAEALAGLRSFDEALHSADKALHYFNRRGELNQDEGKLWISAVYSRALALDGLGRGAEAMPEFKKVVEMIEER 135 (159)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHCCTTSTHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHC
T ss_pred hHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhhhccccCCCchHHHHHHHHHhHHHHHHHCCCHHHHHHHHHHHHhcCCCc
Confidence 3458888888888888888888888888888 88888888 888888888888888888888888888876
Q ss_pred HHHHHHHHHH
Q 006120 303 VDALYNLGGL 312 (660)
Q Consensus 303 ~~a~~~La~~ 312 (660)
......+..+
T Consensus 136 ~~~~~~~~~~ 145 (159)
T 2hr2_A 136 KGETPGKERM 145 (159)
T ss_dssp CSCCTTHHHH
T ss_pred HHHHHHHHHH
Confidence 5544444433
No 154
>1hxi_A PEX5, peroxisome targeting signal 1 receptor PEX5; alpha helical, transport protein; 1.60A {Trypanosoma brucei} SCOP: a.118.8.1
Probab=99.43 E-value=9.8e-13 Score=114.83 Aligned_cols=99 Identities=16% Similarity=0.127 Sum_probs=59.2
Q ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhCC
Q 006120 204 YVNLGIALEGEGMVLSACEYYRESAILCPTHFRALKLLGSALFGVGEYRAAVKALEEAIFIKPDYADAHCDLASALHAMG 283 (660)
Q Consensus 204 ~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g 283 (660)
++.+|..+...|++++|+..++++++.+|+++.+|..+|.++...|++++|+..|+++++++|+++.++.++|.++...|
T Consensus 20 ~~~~g~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~P~~~~~~~~la~~~~~~g 99 (121)
T 1hxi_A 20 PMEEGLSMLKLANLAEAALAFEAVCQKEPEREEAWRSLGLTQAENEKDGLAIIALNHARMLDPKDIAVHAALAVSHTNEH 99 (121)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcC
Confidence 45556666666666666666666666666666666666666666666666666666666666666666666666666666
Q ss_pred ChHHHHHHHHHHHHhCCCC
Q 006120 284 EDERAIEVFQKAIDLKPGH 302 (660)
Q Consensus 284 ~~~~A~~~~~~al~~~p~~ 302 (660)
++++|+..++++++++|++
T Consensus 100 ~~~~A~~~~~~al~~~P~~ 118 (121)
T 1hxi_A 100 NANAALASLRAWLLSQPQY 118 (121)
T ss_dssp HHHHHHHHHHHHHC-----
T ss_pred CHHHHHHHHHHHHHhCcCC
Confidence 6666666666666665554
No 155
>3gw4_A Uncharacterized protein; structural genomics, PSI-2, protein structure initiative, no structural genomics consortium, NESG, DRR162B; 2.49A {Deinococcus radiodurans R1}
Probab=99.42 E-value=2.1e-12 Score=122.73 Aligned_cols=160 Identities=16% Similarity=0.125 Sum_probs=131.0
Q ss_pred HHHcCCHHHHHHHHHHHHHHhccCCCchhchHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh------CCCcHHHHHHHH
Q 006120 169 LYVLGRYREAKEEYLLALEAAETGGNQWAYLLPQIYVNLGIALEGEGMVLSACEYYRESAIL------CPTHFRALKLLG 242 (660)
Q Consensus 169 ~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~------~p~~~~~~~~lg 242 (660)
+...|++++|.+.++.... +|.. .+.++..+|.++...|++++|+.++++++.+ .+....++.++|
T Consensus 2 ~~~~g~~~~A~~~~~~~~~-~~~~-------~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~ 73 (203)
T 3gw4_A 2 AFEAHDYALAERQAQALLA-HPAT-------ASGARFMLGYVYAFMDRFDEARASFQALQQQAQKSGDHTAEHRALHQVG 73 (203)
T ss_dssp -----CHHHHHHHHHHHHT-STTT-------HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHH
T ss_pred ccccccHHHHHHHHHHhcC-ChHH-------HHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHH
Confidence 3568999999995554433 3321 7899999999999999999999999999984 344577899999
Q ss_pred HHHHHCCCHHHHHHHHHHHHHh---CCCC----HHHHHHHHHHHHhCCChHHHHHHHHHHHHhCC--CC----HHHHHHH
Q 006120 243 SALFGVGEYRAAVKALEEAIFI---KPDY----ADAHCDLASALHAMGEDERAIEVFQKAIDLKP--GH----VDALYNL 309 (660)
Q Consensus 243 ~~~~~~g~~~~A~~~~~~al~~---~p~~----~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p--~~----~~a~~~L 309 (660)
.++...|++++|+.++++++.+ .+++ ..++.++|.++..+|++++|+.++++++.+.+ .+ ..++..+
T Consensus 74 ~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l 153 (203)
T 3gw4_A 74 MVERMAGNWDAARRCFLEERELLASLPEDPLAASANAYEVATVALHFGDLAGARQEYEKSLVYAQQADDQVAIACAFRGL 153 (203)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHcCCHHHHHHHHHHHHHHHHHcCccHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhccchHHHHHHHHHH
Confidence 9999999999999999999998 4433 56789999999999999999999999997642 22 3457899
Q ss_pred HHHHHHhcCCCHHHHHHHHHHHHcccCCh
Q 006120 310 GGLYMDLGAGETEEAKKALKEALKMTNRV 338 (660)
Q Consensus 310 a~~~~~~~~g~~~eA~~~~~~al~l~p~~ 338 (660)
|.++... |++++|..++++++++....
T Consensus 154 a~~~~~~--g~~~~A~~~~~~al~~~~~~ 180 (203)
T 3gw4_A 154 GDLAQQE--KNLLEAQQHWLRARDIFAEL 180 (203)
T ss_dssp HHHHHHT--TCHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHC--cCHHHHHHHHHHHHHHHHHc
Confidence 9999999 99999999999999987543
No 156
>3rkv_A Putative peptidylprolyl isomerase; structural genomics, APC102156, PSI-biology, midwest center structural genomics, MCSG; 2.41A {Caenorhabditis elegans}
Probab=99.42 E-value=1.5e-12 Score=119.77 Aligned_cols=117 Identities=13% Similarity=0.024 Sum_probs=89.9
Q ss_pred HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh------------------CCCcHHHHHHHHHHHHHCCCHHHHHHHHHHH
Q 006120 200 LPQIYVNLGIALEGEGMVLSACEYYRESAIL------------------CPTHFRALKLLGSALFGVGEYRAAVKALEEA 261 (660)
Q Consensus 200 ~~~~~~~la~~~~~~g~~~~A~~~~~~al~~------------------~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~a 261 (660)
.+..+..+|..+...|++++|+..|++++.+ +|....++.++|.++..+|++++|+..++++
T Consensus 10 ~a~~~~~~G~~~~~~~~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~~~~~~A~~~~~~a 89 (162)
T 3rkv_A 10 SVEALRQKGNELFVQKDYKEAIDAYRDALTRLDTLILREKPGEPEWVELDRKNIPLYANMSQCYLNIGDLHEAEETSSEV 89 (162)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHTSCTTSHHHHHHHHTHHHHHHHHHHHHHHHTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcccCCCCHHHHHHHHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHH
Confidence 5778889999999999999999999999988 5556667777777777777777777777777
Q ss_pred HHhCCCCHHHHHHHHHHHHhCCChHHHHHHHHHHHHhCCCCH-HHHHHHHHHHHHh
Q 006120 262 IFIKPDYADAHCDLASALHAMGEDERAIEVFQKAIDLKPGHV-DALYNLGGLYMDL 316 (660)
Q Consensus 262 l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~-~a~~~La~~~~~~ 316 (660)
+.++|+++.+|+.+|.++..+|++++|+..|+++++++|++. .+...++.+....
T Consensus 90 l~~~p~~~~a~~~~g~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~~l~~~~~~~ 145 (162)
T 3rkv_A 90 LKREETNEKALFRRAKARIAAWKLDEAEEDLKLLLRNHPAAASVVAREMKIVTERR 145 (162)
T ss_dssp HHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHHHH
T ss_pred HhcCCcchHHHHHHHHHHHHHhcHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHH
Confidence 777777777777777777777777777777777777777776 4455555555443
No 157
>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*
Probab=99.42 E-value=2.8e-13 Score=150.30 Aligned_cols=187 Identities=11% Similarity=0.004 Sum_probs=172.0
Q ss_pred HHHHHHHHHHHHhhccCcHHHHHHHHHHHHHHHHcCC----------HHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcC
Q 006120 104 FVKELGVLRNRADGARSREEAFDGHMAIGRVLYEHQL----------FKEALVSFKRACELQPTDVRPHFRAGNCLYVLG 173 (660)
Q Consensus 104 ~~~Al~~l~~a~~~~~~~~~~~~~~~~lg~~~~~~g~----------~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g 173 (660)
.++|+..+.+++...|+. +.+|+..+.++...|+ +++|+..+.++++.+|++..+|+..+.++...+
T Consensus 45 ~eeal~~~~~~l~~nP~~---~taW~~R~~~l~~l~~~~~~~~~~~~~~~eL~~~~~~l~~~pK~y~aW~hR~w~l~~l~ 121 (567)
T 1dce_A 45 DESVLELTSQILGANPDF---ATLWNCRREVLQHLETEKSPEESAALVKAELGFLESCLRVNPKSYGTWHHRCWLLSRLP 121 (567)
T ss_dssp SHHHHHHHHHHHHHCTTC---HHHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTCS
T ss_pred CHHHHHHHHHHHHHCchh---HHHHHHHHHHHHhcccccchhhhhhhHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcc
Confidence 357799999999887776 4889999999999988 999999999999999999999999999999999
Q ss_pred --CHHHHHHHHHHHHHHhccCCCchhchHHHHHHHHHHHHHHCC-CHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHC--
Q 006120 174 --RYREAKEEYLLALEAAETGGNQWAYLLPQIYVNLGIALEGEG-MVLSACEYYRESAILCPTHFRALKLLGSALFGV-- 248 (660)
Q Consensus 174 --~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~la~~~~~~g-~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~-- 248 (660)
+++++++.+.++++.+|. ...+|...+.++...| .++++++++.++++.+|.+..+|..++.++...
T Consensus 122 ~~~~~~el~~~~k~l~~d~~--------N~~aW~~R~~~l~~l~~~~~~el~~~~~~I~~~p~n~saW~~r~~ll~~l~~ 193 (567)
T 1dce_A 122 EPNWARELELCARFLEADER--------NFHCWDYRRFVAAQAAVAPAEELAFTDSLITRNFSNYSSWHYRSCLLPQLHP 193 (567)
T ss_dssp SCCHHHHHHHHHHHHHHCTT--------CHHHHHHHHHHHHHTCCCHHHHHHHHHTTTTTTCCCHHHHHHHHHHHHHHSC
T ss_pred cccHHHHHHHHHHHHhhccc--------cccHHHHHHHHHHHcCCChHHHHHHHHHHHHHCCCCccHHHHHHHHHHhhcc
Confidence 779999999999999999 7889999999999999 999999999999999999999999999999884
Q ss_pred ------------CCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhCCChHH------------HHHHHHHHHHhCCC
Q 006120 249 ------------GEYRAAVKALEEAIFIKPDYADAHCDLASALHAMGEDER------------AIEVFQKAIDLKPG 301 (660)
Q Consensus 249 ------------g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~------------A~~~~~~al~~~p~ 301 (660)
+.+++|++++.+|+.++|++..+|+.++.++...+++++ |+.+|.+++.++|.
T Consensus 194 ~~~~~~~~~~~~~~~~eel~~~~~ai~~~P~~~saW~y~~~ll~~~~~~~~~~~~~~~~~~~~~~~~f~~~i~~~~~ 270 (567)
T 1dce_A 194 QPDSGPQGRLPENVLLKELELVQNAFFTDPNDQSAWFYHRWLLGRAEPHDVLCCVHVSREEACLSVCFSRPLTVGSR 270 (567)
T ss_dssp CCCSSSCCSSCHHHHHHHHHHHHHHHHHCSSCSHHHHHHHHHHSCCCCCSCEEEEEEETTTTEEEEEEEEEECTTBT
T ss_pred cccccccccccHHHHHHHHHHHHHHHhhCCCCccHHHHHHHHHhcCCCccceeeeeeccCCceEEEEeccceecccc
Confidence 568999999999999999999999999999999998777 66667888877775
No 158
>3q49_B STIP1 homology and U box-containing protein 1; E3 ubiquitin ligase, ligase-chaperone complex; 1.54A {Mus musculus} PDB: 3q47_B 3q4a_B*
Probab=99.42 E-value=2.1e-12 Score=114.49 Aligned_cols=102 Identities=17% Similarity=0.057 Sum_probs=59.2
Q ss_pred HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHH
Q 006120 200 LPQIYVNLGIALEGEGMVLSACEYYRESAILCPTHFRALKLLGSALFGVGEYRAAVKALEEAIFIKPDYADAHCDLASAL 279 (660)
Q Consensus 200 ~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~ 279 (660)
.+..+..+|.++...|++++|+.+|++++..+|+++.++.++|.++...|++++|+..+++++.++|+++.++.++|.++
T Consensus 8 ~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~ 87 (137)
T 3q49_B 8 SAQELKEQGNRLFVGRKYPEAAACYGRAITRNPLVAVYYTNRALCYLKMQQPEQALADCRRALELDGQSVKAHFFLGQCQ 87 (137)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHhCcHHHHHHHHHHHHhhCcCcHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCchhHHHHHHHHHHH
Confidence 34555555555555555555555555555555555555555555555555555555555555555555555555555555
Q ss_pred HhCCChHHHHHHHHHHHHhCCC
Q 006120 280 HAMGEDERAIEVFQKAIDLKPG 301 (660)
Q Consensus 280 ~~~g~~~~A~~~~~~al~~~p~ 301 (660)
..+|++++|+..|+++++++|+
T Consensus 88 ~~~~~~~~A~~~~~~a~~~~p~ 109 (137)
T 3q49_B 88 LEMESYDEAIANLQRAYSLAKE 109 (137)
T ss_dssp HHTTCHHHHHHHHHHHHHHHHH
T ss_pred HHHhhHHHHHHHHHHHHHHChh
Confidence 5555555555555555555554
No 159
>1na0_A Designed protein CTPR3; de novo protein; HET: IPT; 1.60A {Unidentified} SCOP: k.38.1.1 PDB: 2wqh_A 3kd7_A
Probab=99.42 E-value=7.1e-12 Score=108.25 Aligned_cols=116 Identities=31% Similarity=0.446 Sum_probs=69.6
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhccCCCchhchHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCcHHHH
Q 006120 159 VRPHFRAGNCLYVLGRYREAKEEYLLALEAAETGGNQWAYLLPQIYVNLGIALEGEGMVLSACEYYRESAILCPTHFRAL 238 (660)
Q Consensus 159 ~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~ 238 (660)
..++..+|.++...|++++|+..++++++..|. ...++..+|.++...|++++|+.++++++...|.+..++
T Consensus 9 ~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~--------~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~ 80 (125)
T 1na0_A 9 AEAWYNLGNAYYKQGDYDEAIEYYQKALELDPN--------NAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAW 80 (125)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT--------CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcC--------cHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCccHHHH
Confidence 445555566666666666666666666655554 345555566666666666666666666666666666666
Q ss_pred HHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhC
Q 006120 239 KLLGSALFGVGEYRAAVKALEEAIFIKPDYADAHCDLASALHAM 282 (660)
Q Consensus 239 ~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~ 282 (660)
..+|.++...|++++|+..+++++...|++..++..+|.++...
T Consensus 81 ~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 124 (125)
T 1na0_A 81 YNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAKQNLGNAKQKQ 124 (125)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhcCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHhc
Confidence 66666666666666666666666666666666666666555443
No 160
>3q49_B STIP1 homology and U box-containing protein 1; E3 ubiquitin ligase, ligase-chaperone complex; 1.54A {Mus musculus} PDB: 3q47_B 3q4a_B*
Probab=99.41 E-value=6.4e-12 Score=111.35 Aligned_cols=107 Identities=23% Similarity=0.254 Sum_probs=101.8
Q ss_pred HhCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhCCChHHHHHHHHHHHHhCCCCHHHHHH
Q 006120 229 ILCPTHFRALKLLGSALFGVGEYRAAVKALEEAIFIKPDYADAHCDLASALHAMGEDERAIEVFQKAIDLKPGHVDALYN 308 (660)
Q Consensus 229 ~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~ 308 (660)
..+|.++..+..+|.++...|++++|+..|++++.++|+++.++.++|.++..+|++++|+..++++++++|+++.+++.
T Consensus 3 ~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~ 82 (137)
T 3q49_B 3 HMKSPSAQELKEQGNRLFVGRKYPEAAACYGRAITRNPLVAVYYTNRALCYLKMQQPEQALADCRRALELDGQSVKAHFF 82 (137)
T ss_dssp ---CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHH
T ss_pred CCccccHHHHHHHHHHHHHhCcHHHHHHHHHHHHhhCcCcHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCchhHHHHHH
Confidence 35678899999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHhcCCCHHHHHHHHHHHHcccCC
Q 006120 309 LGGLYMDLGAGETEEAKKALKEALKMTNR 337 (660)
Q Consensus 309 La~~~~~~~~g~~~eA~~~~~~al~l~p~ 337 (660)
+|.++..+ |++++|+..|++++++.|+
T Consensus 83 l~~~~~~~--~~~~~A~~~~~~a~~~~p~ 109 (137)
T 3q49_B 83 LGQCQLEM--ESYDEAIANLQRAYSLAKE 109 (137)
T ss_dssp HHHHHHHT--TCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHH--hhHHHHHHHHHHHHHHChh
Confidence 99999999 9999999999999999876
No 161
>4b4t_Q 26S proteasome regulatory subunit RPN6; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=99.40 E-value=6.6e-12 Score=134.59 Aligned_cols=206 Identities=10% Similarity=0.022 Sum_probs=172.7
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCH-----------------HHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Q 006120 126 DGHMAIGRVLYEHQLFKEALVSFKRACELQPTDV-----------------RPHFRAGNCLYVLGRYREAKEEYLLALEA 188 (660)
Q Consensus 126 ~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~-----------------~~~~~la~~~~~~g~~~~A~~~~~~al~~ 188 (660)
.+....|..+...|++++|++.|.++++..|... .++..+|.+|...|++++|.+++.+++..
T Consensus 5 ~~~l~~a~~l~~~~~y~eA~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~al~~l~~~y~~~~~~~~a~~~~~~~~~~ 84 (434)
T 4b4t_Q 5 GSKLEEARRLVNEKQYNEAEQVYLSLLDKDSSQSSAAAGASVDDKRRNEQETSILELGQLYVTMGAKDKLREFIPHSTEY 84 (434)
T ss_dssp THHHHHHHHHHHHTCHHHHHHHHHHHHHSCCCSSSBSSSSSBCSHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHTHHH
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHhhCcccchhHHHHHHHHHHhhhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHH
Confidence 3456678888999999999999999999876532 46889999999999999999999999998
Q ss_pred hccCCCchhchHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC------CCcHHHHHHHHHHHHHCCCHHHHHHHHHHHH
Q 006120 189 AETGGNQWAYLLPQIYVNLGIALEGEGMVLSACEYYRESAILC------PTHFRALKLLGSALFGVGEYRAAVKALEEAI 262 (660)
Q Consensus 189 ~p~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~------p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al 262 (660)
.+....... ...+...++.++...|++++|+.++++++... +....++..+|.++...|++++|+..+++++
T Consensus 85 ~~~~~~~~~--~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~l~~~~ 162 (434)
T 4b4t_Q 85 MMQFAKSKT--VKVLKTLIEKFEQVPDSLDDQIFVCEKSIEFAKREKRVFLKHSLSIKLATLHYQKKQYKDSLALINDLL 162 (434)
T ss_dssp HHTSCHHHH--HHHHHHHHHHHCSCCSCHHHHHHHHHHHHHHHHHSSCCSSHHHHHHHHHHHHHHHTCHHHHHHHHHHHH
T ss_pred HHHccchHH--HHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHhCccHHHHHHHHHHHHHHHHccChHHHHHHHHHHH
Confidence 877554332 45677788999999999999999999998763 3347789999999999999999999999998
Q ss_pred HhC------CCCHHHHHHHHHHHHhCCChHHHHHHHHHHHHhC---CCC----HHHHHHHHHHHHHhcCCCHHHHHHHHH
Q 006120 263 FIK------PDYADAHCDLASALHAMGEDERAIEVFQKAIDLK---PGH----VDALYNLGGLYMDLGAGETEEAKKALK 329 (660)
Q Consensus 263 ~~~------p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~---p~~----~~a~~~La~~~~~~~~g~~~eA~~~~~ 329 (660)
... +....++..+|.+|..+|++++|..++++++... +.. ...+..+|.++... |++++|..+|.
T Consensus 163 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~g~~~~~~--~~y~~A~~~~~ 240 (434)
T 4b4t_Q 163 REFKKLDDKPSLVDVHLLESKVYHKLRNLAKSKASLTAARTAANSIYCPTQTVAELDLMSGILHCED--KDYKTAFSYFF 240 (434)
T ss_dssp HHHTTSSCSTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHTTSS--SCHHHHHHHHH
T ss_pred HHHHhcccchhHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHhhcCCCchHHHHHHHHHHHHHHHHH--HhHHHHHHHHH
Confidence 762 3347789999999999999999999999998874 222 34667788888877 99999999999
Q ss_pred HHHccc
Q 006120 330 EALKMT 335 (660)
Q Consensus 330 ~al~l~ 335 (660)
++++..
T Consensus 241 ~a~~~~ 246 (434)
T 4b4t_Q 241 ESFESY 246 (434)
T ss_dssp HHHHHH
T ss_pred HHHHHh
Confidence 998764
No 162
>1hxi_A PEX5, peroxisome targeting signal 1 receptor PEX5; alpha helical, transport protein; 1.60A {Trypanosoma brucei} SCOP: a.118.8.1
Probab=99.40 E-value=2.5e-12 Score=112.25 Aligned_cols=100 Identities=17% Similarity=0.111 Sum_probs=93.1
Q ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhCCChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHh
Q 006120 237 ALKLLGSALFGVGEYRAAVKALEEAIFIKPDYADAHCDLASALHAMGEDERAIEVFQKAIDLKPGHVDALYNLGGLYMDL 316 (660)
Q Consensus 237 ~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~La~~~~~~ 316 (660)
.++.+|..+...|++++|+..|+++++.+|+++.+|+.+|.++...|++++|+..|+++++++|+++.++..+|.++...
T Consensus 19 ~~~~~g~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~P~~~~~~~~la~~~~~~ 98 (121)
T 1hxi_A 19 NPMEEGLSMLKLANLAEAALAFEAVCQKEPEREEAWRSLGLTQAENEKDGLAIIALNHARMLDPKDIAVHAALAVSHTNE 98 (121)
T ss_dssp CHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHc
Confidence 57889999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cCCCHHHHHHHHHHHHcccCCh
Q 006120 317 GAGETEEAKKALKEALKMTNRV 338 (660)
Q Consensus 317 ~~g~~~eA~~~~~~al~l~p~~ 338 (660)
|++++|+..++++++++|..
T Consensus 99 --g~~~~A~~~~~~al~~~P~~ 118 (121)
T 1hxi_A 99 --HNANAALASLRAWLLSQPQY 118 (121)
T ss_dssp --HHHHHHHHHHHHHHC-----
T ss_pred --CCHHHHHHHHHHHHHhCcCC
Confidence 99999999999999999863
No 163
>3rkv_A Putative peptidylprolyl isomerase; structural genomics, APC102156, PSI-biology, midwest center structural genomics, MCSG; 2.41A {Caenorhabditis elegans}
Probab=99.39 E-value=3.6e-12 Score=117.13 Aligned_cols=85 Identities=18% Similarity=0.035 Sum_probs=78.6
Q ss_pred HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCH-HHHHHHHHH
Q 006120 200 LPQIYVNLGIALEGEGMVLSACEYYRESAILCPTHFRALKLLGSALFGVGEYRAAVKALEEAIFIKPDYA-DAHCDLASA 278 (660)
Q Consensus 200 ~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~-~~~~~la~~ 278 (660)
...++.++|.++..+|++++|+..+++++.++|+++.+++.+|.++..+|++++|+..|++++.++|++. .+...++.+
T Consensus 62 ~~~~~~nla~~~~~~~~~~~A~~~~~~al~~~p~~~~a~~~~g~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~~l~~~ 141 (162)
T 3rkv_A 62 NIPLYANMSQCYLNIGDLHEAEETSSEVLKREETNEKALFRRAKARIAAWKLDEAEEDLKLLLRNHPAAASVVAREMKIV 141 (162)
T ss_dssp HHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCGGGHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhcCcHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHhcHHHHHHHHHHHHhcCCCCHHHHHHHHHHH
Confidence 7889999999999999999999999999999999999999999999999999999999999999999998 667777777
Q ss_pred HHhCCC
Q 006120 279 LHAMGE 284 (660)
Q Consensus 279 ~~~~g~ 284 (660)
....++
T Consensus 142 ~~~~~~ 147 (162)
T 3rkv_A 142 TERRAE 147 (162)
T ss_dssp HHHHHH
T ss_pred HHHHHH
Confidence 655433
No 164
>1b89_A Protein (clathrin heavy chain); triskelion, coated vesicles, endocytosis, SELF- assembly, alpha-alpha superhelix; 2.60A {Bos taurus} SCOP: a.118.1.3
Probab=99.39 E-value=4.5e-13 Score=140.69 Aligned_cols=208 Identities=18% Similarity=0.068 Sum_probs=100.7
Q ss_pred HhHHHHHHHHHHHHHHHHHHHHHHHHHhhccCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHH
Q 006120 89 EKRVFWEESTHDYAVFVKELGVLRNRADGARSREEAFDGHMAIGRVLYEHQLFKEALVSFKRACELQPTDVRPHFRAGNC 168 (660)
Q Consensus 89 ~~~~~l~~~~~~~g~~~~Al~~l~~a~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~ 168 (660)
..+..++.++...|++.+|++.|.++ + ....+...+..+...|++++|+.+++.+.+..++ +.+...++.+
T Consensus 33 ~vWs~La~A~l~~g~~~eAIdsfika----~----D~~~y~~V~~~ae~~g~~EeAi~yl~~ark~~~~-~~i~~~Li~~ 103 (449)
T 1b89_A 33 AVWSQLAKAQLQKGMVKEAIDSYIKA----D----DPSSYMEVVQAANTSGNWEELVKYLQMARKKARE-SYVETELIFA 103 (449)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHcC----C----CHHHHHHHHHHHHhCCCHHHHHHHHHHHHHhCcc-chhHHHHHHH
Confidence 36667899999999999999999764 1 2357888999999999999999999999886444 7788899999
Q ss_pred HHHcCCHHHHHHHHHHHHHHhccCCCchhchHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHC
Q 006120 169 LYVLGRYREAKEEYLLALEAAETGGNQWAYLLPQIYVNLGIALEGEGMVLSACEYYRESAILCPTHFRALKLLGSALFGV 248 (660)
Q Consensus 169 ~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~ 248 (660)
|.+.|++.++.++++. | ...++..+|..+...|+|++|..+|.++ ..|..+|.++.++
T Consensus 104 Y~Klg~l~e~e~f~~~-----p---------n~~a~~~IGd~~~~~g~yeeA~~~Y~~a--------~n~~~LA~~L~~L 161 (449)
T 1b89_A 104 LAKTNRLAELEEFING-----P---------NNAHIQQVGDRCYDEKMYDAAKLLYNNV--------SNFGRLASTLVHL 161 (449)
T ss_dssp -----CHHHHTTTTTC-----C-------------------------CTTTHHHHHHHT--------TCHHHHHHHHHTT
T ss_pred HHHhCCHHHHHHHHcC-----C---------cHHHHHHHHHHHHHcCCHHHHHHHHHHh--------hhHHHHHHHHHHh
Confidence 9999999999888752 3 3358999999999999999999999976 4789999999999
Q ss_pred CCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhCCChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCCCHHHHHHHH
Q 006120 249 GEYRAAVKALEEAIFIKPDYADAHCDLASALHAMGEDERAIEVFQKAIDLKPGHVDALYNLGGLYMDLGAGETEEAKKAL 328 (660)
Q Consensus 249 g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~La~~~~~~~~g~~~eA~~~~ 328 (660)
|++++|++.++++ +++.+|.....++...|+++.|..+..+ +.. +++-...+...|... |++++|+.++
T Consensus 162 g~yq~AVea~~KA-----~~~~~Wk~v~~aCv~~~ef~lA~~~~l~-L~~---~ad~l~~lv~~Yek~--G~~eEai~lL 230 (449)
T 1b89_A 162 GEYQAAVDGARKA-----NSTRTWKEVCFACVDGKEFRLAQMCGLH-IVV---HADELEELINYYQDR--GYFEELITML 230 (449)
T ss_dssp TCHHHHHHHHHHH-----TCHHHHHHHHHHHHHTTCHHHHHHTTTT-TTT---CHHHHHHHHHHHHHT--TCHHHHHHHH
T ss_pred ccHHHHHHHHHHc-----CCchhHHHHHHHHHHcCcHHHHHHHHHH-HHh---CHhhHHHHHHHHHHC--CCHHHHHHHH
Confidence 9999999999999 4789999999999999999999877765 223 444566788899998 9999999999
Q ss_pred HHHHcccCCh
Q 006120 329 KEALKMTNRV 338 (660)
Q Consensus 329 ~~al~l~p~~ 338 (660)
++++.+++..
T Consensus 231 e~aL~le~ah 240 (449)
T 1b89_A 231 EAALGLERAH 240 (449)
T ss_dssp HHHTTSTTCC
T ss_pred HHHhCCcHHH
Confidence 9999998653
No 165
>3mv2_B Coatomer subunit epsilon; vesicular membrane coat COAT protein complex I, protein TRAN; 2.90A {Saccharomyces cerevisiae} PDB: 3mv3_B
Probab=99.38 E-value=1.3e-11 Score=124.22 Aligned_cols=192 Identities=9% Similarity=0.006 Sum_probs=144.6
Q ss_pred HHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhccCCCchhchHHHHHHHHHHHHHHCCCHHHHHHH
Q 006120 144 ALVSFKRACELQPTDVRPHFRAGNCLYVLGRYREAKEEYLLALEAAETGGNQWAYLLPQIYVNLGIALEGEGMVLSACEY 223 (660)
Q Consensus 144 A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~ 223 (660)
|+..+++.++..+....++..+|.++...|++++|+..+.+.+..+|... ...++..++.++..+|+.+.|.+.
T Consensus 85 a~~~l~~l~~~~~~~~~~~~~la~i~~~~g~~eeAL~~l~~~i~~~~~~~------~lea~~l~vqi~L~~~r~d~A~k~ 158 (310)
T 3mv2_B 85 NIEELENLLKDKQNSPYELYLLATAQAILGDLDKSLETCVEGIDNDEAEG------TTELLLLAIEVALLNNNVSTASTI 158 (310)
T ss_dssp CCHHHHHTTTTSCCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHTSSCSTT------HHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred HHHHHHHHHhcCCCCcHHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCcC------cHHHHHHHHHHHHHCCCHHHHHHH
Confidence 77778877776656667777888888889999999999988887776210 778888888889999999999999
Q ss_pred HHHHHHhCCC----cHHHHHHH--HHHHHHCC--CHHHHHHHHHHHHHhCCC--CHHHHHHHHHHHHhCCChHHHHHHHH
Q 006120 224 YRESAILCPT----HFRALKLL--GSALFGVG--EYRAAVKALEEAIFIKPD--YADAHCDLASALHAMGEDERAIEVFQ 293 (660)
Q Consensus 224 ~~~al~~~p~----~~~~~~~l--g~~~~~~g--~~~~A~~~~~~al~~~p~--~~~~~~~la~~~~~~g~~~~A~~~~~ 293 (660)
++++.+.+|+ +-.....+ +.+....| ++.+|...|+++.+..|+ ....+.+ ++..+|++++|...++
T Consensus 159 l~~~~~~~~d~~~~~d~~l~~Laea~v~l~~g~~~~q~A~~~f~El~~~~p~~~~~~lLln---~~~~~g~~~eAe~~L~ 235 (310)
T 3mv2_B 159 FDNYTNAIEDTVSGDNEMILNLAESYIKFATNKETATSNFYYYEELSQTFPTWKTQLGLLN---LHLQQRNIAEAQGIVE 235 (310)
T ss_dssp HHHHHHHSCHHHHHHHHHHHHHHHHHHHHHHTCSTTTHHHHHHHHHHTTSCSHHHHHHHHH---HHHHHTCHHHHHHHHH
T ss_pred HHHHHhcCccccccchHHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHhCCCcccHHHHHH---HHHHcCCHHHHHHHHH
Confidence 9888888883 22333344 43455445 888899999998887776 2333333 7888899999999988
Q ss_pred HHHHh----------CCCCHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHcccCChhHHHHHHHHH
Q 006120 294 KAIDL----------KPGHVDALYNLGGLYMDLGAGETEEAKKALKEALKMTNRVELHDAVSHLK 348 (660)
Q Consensus 294 ~al~~----------~p~~~~a~~~La~~~~~~~~g~~~eA~~~~~~al~l~p~~~~~~~~~~l~ 348 (660)
.+++. +|++++++.+++.+...+ |+ +|.++++++.+..|+......+....
T Consensus 236 ~l~~~~p~~~~k~~~~p~~~~~LaN~i~l~~~l--gk--~a~~l~~qL~~~~P~hp~i~d~~~k~ 296 (310)
T 3mv2_B 236 LLLSDYYSVEQKENAVLYKPTFLANQITLALMQ--GL--DTEDLTNQLVKLDHEHAFIKHHQEID 296 (310)
T ss_dssp HHHSHHHHTTTCHHHHSSHHHHHHHHHHHHHHT--TC--TTHHHHHHHHHTTCCCHHHHHHHHHH
T ss_pred HHHHhcccccccccCCCCCHHHHHHHHHHHHHh--Ch--HHHHHHHHHHHhCCCChHHHHHHHHH
Confidence 77766 478888888888888887 76 88888999999888876654444433
No 166
>1elw_A TPR1-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, HSP70, protein binding, chaperone; 1.60A {Homo sapiens} SCOP: a.118.8.1
Probab=99.37 E-value=1.6e-11 Score=104.85 Aligned_cols=111 Identities=16% Similarity=0.074 Sum_probs=67.2
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhccCCCchhchHHHHHH
Q 006120 126 DGHMAIGRVLYEHQLFKEALVSFKRACELQPTDVRPHFRAGNCLYVLGRYREAKEEYLLALEAAETGGNQWAYLLPQIYV 205 (660)
Q Consensus 126 ~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~ 205 (660)
..++.+|..+...|++++|+..|++++...|.++.++..+|.++...|++++|+..++++++..|. .+.++.
T Consensus 5 ~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~--------~~~~~~ 76 (118)
T 1elw_A 5 NELKEKGNKALSVGNIDDALQCYSEAIKLDPHNHVLYSNRSAAYAKKGDYQKAYEDGCKTVDLKPD--------WGKGYS 76 (118)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTT--------CHHHHH
T ss_pred HHHHHHHHHHHHcccHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHhhccHHHHHHHHHHHHHhCcc--------cHHHHH
Confidence 455566666666666666666666666666666666666666666666666666666666666555 445555
Q ss_pred HHHHHHHHCCCHHHHHHHHHHHHHhCCCcHHHHHHHHHH
Q 006120 206 NLGIALEGEGMVLSACEYYRESAILCPTHFRALKLLGSA 244 (660)
Q Consensus 206 ~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~ 244 (660)
.+|.++...|++++|+.+++++++.+|++..++..++.+
T Consensus 77 ~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~ 115 (118)
T 1elw_A 77 RKAAALEFLNRFEEAKRTYEEGLKHEANNPQLKEGLQNM 115 (118)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHTTCTTCHHHHHHHHHH
T ss_pred HHHHHHHHHhhHHHHHHHHHHHHHcCCCCHHHHHHHHHh
Confidence 566666666666666666666666556555555555544
No 167
>3ro3_A PINS homolog, G-protein-signaling modulator 2; asymmetric cell division, protein binding; 1.10A {Mus musculus}
Probab=99.37 E-value=8.9e-12 Score=112.90 Aligned_cols=102 Identities=18% Similarity=0.109 Sum_probs=43.8
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCH------HHHHHHHHHHHHcCCHHHHHHHHHHHHHHhccCCCchhc
Q 006120 125 FDGHMAIGRVLYEHQLFKEALVSFKRACELQPTDV------RPHFRAGNCLYVLGRYREAKEEYLLALEAAETGGNQWAY 198 (660)
Q Consensus 125 ~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~------~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~ 198 (660)
..++..+|.++...|++++|+.+++++++..+... .++..+|.++...|++++|+.++++++++.+...+...
T Consensus 9 ~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~- 87 (164)
T 3ro3_A 9 GRAFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGDKAAERIAYSNLGNAYIFLGEFETASEYYKKTLLLARQLKDRAV- 87 (164)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHH-
T ss_pred HHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHhCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCcHH-
Confidence 34444445555555555555555544444432211 13444444444444444444444444444444333222
Q ss_pred hHHHHHHHHHHHHHHCCCHHHHHHHHHHHH
Q 006120 199 LLPQIYVNLGIALEGEGMVLSACEYYRESA 228 (660)
Q Consensus 199 ~~~~~~~~la~~~~~~g~~~~A~~~~~~al 228 (660)
...++.++|.++...|++++|+.++++++
T Consensus 88 -~~~~~~~l~~~~~~~~~~~~A~~~~~~a~ 116 (164)
T 3ro3_A 88 -EAQSCYSLGNTYTLLQDYEKAIDYHLKHL 116 (164)
T ss_dssp -HHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred -HHHHHHHHHHHHHHHhhHHHHHHHHHHHH
Confidence 23334444444444444444444444443
No 168
>3ro3_A PINS homolog, G-protein-signaling modulator 2; asymmetric cell division, protein binding; 1.10A {Mus musculus}
Probab=99.36 E-value=9.1e-12 Score=112.82 Aligned_cols=141 Identities=25% Similarity=0.301 Sum_probs=123.4
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhccCCCchhchHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCc----
Q 006120 159 VRPHFRAGNCLYVLGRYREAKEEYLLALEAAETGGNQWAYLLPQIYVNLGIALEGEGMVLSACEYYRESAILCPTH---- 234 (660)
Q Consensus 159 ~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~---- 234 (660)
..++..+|.++...|++++|+.++++++++.+...+... ...++..+|.++...|++++|+.++++++.+.+..
T Consensus 9 ~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~--~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~ 86 (164)
T 3ro3_A 9 GRAFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGDKAA--ERIAYSNLGNAYIFLGEFETASEYYKKTLLLARQLKDRA 86 (164)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHH--HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHH
T ss_pred HHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHhCCchH--HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCcH
Confidence 567889999999999999999999999999887666555 88999999999999999999999999999875432
Q ss_pred --HHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCC------CHHHHHHHHHHHHhCCChHHHHHHHHHHHHhCCC
Q 006120 235 --FRALKLLGSALFGVGEYRAAVKALEEAIFIKPD------YADAHCDLASALHAMGEDERAIEVFQKAIDLKPG 301 (660)
Q Consensus 235 --~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~------~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~ 301 (660)
..++.++|.++...|++++|+.++++++.+.+. ...++..+|.++...|++++|+.++++++++...
T Consensus 87 ~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~ 161 (164)
T 3ro3_A 87 VEAQSCYSLGNTYTLLQDYEKAIDYHLKHLAIAQELKDRIGEGRACWSLGNAYTALGNHDQAMHFAEKHLEISRE 161 (164)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHccchHhHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHH
Confidence 678899999999999999999999999987432 2567889999999999999999999999987544
No 169
>1wao_1 Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, super-helix,; 2.9A {Homo sapiens} SCOP: a.118.8.1 d.159.1.3
Probab=99.36 E-value=3.2e-13 Score=147.21 Aligned_cols=129 Identities=16% Similarity=0.103 Sum_probs=117.8
Q ss_pred HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHH
Q 006120 200 LPQIYVNLGIALEGEGMVLSACEYYRESAILCPTHFRALKLLGSALFGVGEYRAAVKALEEAIFIKPDYADAHCDLASAL 279 (660)
Q Consensus 200 ~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~ 279 (660)
.+..+..+|.++...|++++|+.+|+++++++|+++.++.++|.++..+|++++|+..++++++++|+++.++.++|.+|
T Consensus 5 ~a~~~~~lg~~~~~~g~~~~A~~~~~~Al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~lg~~~ 84 (477)
T 1wao_1 5 RAEELKTQANDYFKAKDYENAIKFYSQAIELNPSNAIYYGNRSLAYLRTECYGYALGDATRAIELDKKYIKGYYRRAASN 84 (477)
T ss_dssp HHTTSSSSSSSTTTTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHSCTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCCHHHHHHHHHHH
Confidence 45667788889999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HhCCChHHHHHHHHHHHHhCCCCHHHHHHHHHH--HHHhcCCCHHHHHHHHHH
Q 006120 280 HAMGEDERAIEVFQKAIDLKPGHVDALYNLGGL--YMDLGAGETEEAKKALKE 330 (660)
Q Consensus 280 ~~~g~~~~A~~~~~~al~~~p~~~~a~~~La~~--~~~~~~g~~~eA~~~~~~ 330 (660)
..+|++++|+..|+++++++|++..++..++.+ +... |++++|++.+++
T Consensus 85 ~~~g~~~eA~~~~~~al~~~p~~~~~~~~l~~~~~~~~~--g~~~~A~~~~~~ 135 (477)
T 1wao_1 85 MALGKFRAALRDYETVVKVKPHDKDAKMKYQECNKIVKQ--KAFERAIAGDEH 135 (477)
T ss_dssp HHHTCHHHHHHHHHHHHHHSTTCTTHHHHHHHHHHHHHH--HHHCCC------
T ss_pred HHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHH--HHHHHHhccccc
Confidence 999999999999999999999999999999998 7777 999999999993
No 170
>2xev_A YBGF; tetratricopeptide, alpha-helical, metal binding; 1.57A {Xanthomonas campestris}
Probab=99.35 E-value=1.8e-11 Score=107.20 Aligned_cols=112 Identities=18% Similarity=0.185 Sum_probs=89.5
Q ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCcH---HHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCC---HHHHHHHH
Q 006120 203 IYVNLGIALEGEGMVLSACEYYRESAILCPTHF---RALKLLGSALFGVGEYRAAVKALEEAIFIKPDY---ADAHCDLA 276 (660)
Q Consensus 203 ~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~---~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~---~~~~~~la 276 (660)
.++.+|..+...|++++|+..|++++...|++. .+++.+|.++...|++++|+..|++++...|++ +.+++.+|
T Consensus 4 ~~~~~a~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~la 83 (129)
T 2xev_A 4 TAYNVAFDALKNGKYDDASQLFLSFLELYPNGVYTPNALYWLGESYYATRNFQLAEAQFRDLVSRYPTHDKAAGGLLKLG 83 (129)
T ss_dssp CHHHHHHHHHHTTCHHHHHHHHHHHHHHCSSSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTSTTHHHHHHHHH
T ss_pred HHHHHHHHHHHhCCHHHHHHHHHHHHHHCCCCcccHHHHHHHHHHHHHhccHHHHHHHHHHHHHHCCCCcccHHHHHHHH
Confidence 456778888888888888888888888888776 688888888888888888888888888888887 77788888
Q ss_pred HHHHhCCChHHHHHHHHHHHHhCCCCHHHHHHHHHHHH
Q 006120 277 SALHAMGEDERAIEVFQKAIDLKPGHVDALYNLGGLYM 314 (660)
Q Consensus 277 ~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~La~~~~ 314 (660)
.++..+|++++|+..|+++++..|++..+...+..+..
T Consensus 84 ~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~a~~~l~~ 121 (129)
T 2xev_A 84 LSQYGEGKNTEAQQTLQQVATQYPGSDAARVAQERLQS 121 (129)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHSTTSHHHHHHHHHHHH
T ss_pred HHHHHcCCHHHHHHHHHHHHHHCCCChHHHHHHHHHHH
Confidence 88888888888888888888888887766665555443
No 171
>1wao_1 Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, super-helix,; 2.9A {Homo sapiens} SCOP: a.118.8.1 d.159.1.3
Probab=99.35 E-value=6.5e-13 Score=144.77 Aligned_cols=137 Identities=15% Similarity=0.119 Sum_probs=105.1
Q ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhccCCCchhchHHHH
Q 006120 124 AFDGHMAIGRVLYEHQLFKEALVSFKRACELQPTDVRPHFRAGNCLYVLGRYREAKEEYLLALEAAETGGNQWAYLLPQI 203 (660)
Q Consensus 124 ~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~ 203 (660)
.+.++..+|..+...|++++|+..|+++++.+|+++.++.++|.++..+|++++|+..++++++++|. .+.+
T Consensus 5 ~a~~~~~lg~~~~~~g~~~~A~~~~~~Al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~--------~~~~ 76 (477)
T 1wao_1 5 RAEELKTQANDYFKAKDYENAIKFYSQAIELNPSNAIYYGNRSLAYLRTECYGYALGDATRAIELDKK--------YIKG 76 (477)
T ss_dssp HHTTSSSSSSSTTTTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHSCTT--------CHHH
T ss_pred HHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCC--------CHHH
Confidence 34556677778888888888888888888888888888888888888888888888888888888777 6777
Q ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHhCCCcHHHHHHHHHH--HHHCCCHHHHHHHHH-----------HHHHhCCCC
Q 006120 204 YVNLGIALEGEGMVLSACEYYRESAILCPTHFRALKLLGSA--LFGVGEYRAAVKALE-----------EAIFIKPDY 268 (660)
Q Consensus 204 ~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~--~~~~g~~~~A~~~~~-----------~al~~~p~~ 268 (660)
++++|.++..+|++++|+..|+++++++|++..++..++.+ +..+|++++|+..++ +++.+.|+.
T Consensus 77 ~~~lg~~~~~~g~~~eA~~~~~~al~~~p~~~~~~~~l~~~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~al~~~~~~ 154 (477)
T 1wao_1 77 YYRRAASNMALGKFRAALRDYETVVKVKPHDKDAKMKYQECNKIVKQKAFERAIAGDEHKRSVVDSLDIESMTIEDEY 154 (477)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHHHHHHHSTTCTTHHHHHHHHHHHHHHHHHCCC------CCSTTTCCTTSSCCCCTTC
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHhccccccchhHhhhhhhhccccccc
Confidence 88888888888888888888888888888887777777777 777788888888888 666666544
No 172
>2dba_A Smooth muscle cell associated protein-1, isoform 2; tetratricopeptide repeat, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.35 E-value=1.9e-11 Score=109.47 Aligned_cols=112 Identities=18% Similarity=0.098 Sum_probs=57.5
Q ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCc---HHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHH
Q 006120 201 PQIYVNLGIALEGEGMVLSACEYYRESAILCPTH---FRALKLLGSALFGVGEYRAAVKALEEAIFIKPDYADAHCDLAS 277 (660)
Q Consensus 201 ~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~---~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~ 277 (660)
...++.+|..+...|++++|+.+|+++++..|++ ..++..+|.++...|++++|+..+++++.+.|+++.++..+|.
T Consensus 28 ~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~ 107 (148)
T 2dba_A 28 VEQLRKEGNELFKCGDYGGALAAYTQALGLDATPQDQAVLHRNRAACHLKLEDYDKAETEASKAIEKDGGDVKALYRRSQ 107 (148)
T ss_dssp HHHHHHHHHHHHTTTCHHHHHHHHHHHHTSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTSCCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhCCHHHHHHHHHHHHHHcccchHHHHHHHHHHHHHHHHccHHHHHHHHHHHHhhCccCHHHHHHHHH
Confidence 3444444555555555555555555555444444 4445555555555555555555555555555555555555555
Q ss_pred HHHhCCChHHHHHHHHHHHHhCCCCHHHHHHHHHH
Q 006120 278 ALHAMGEDERAIEVFQKAIDLKPGHVDALYNLGGL 312 (660)
Q Consensus 278 ~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~La~~ 312 (660)
++..+|++++|+.+|+++++++|++..++..++.+
T Consensus 108 ~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~ 142 (148)
T 2dba_A 108 ALEKLGRLDQAVLDLQRCVSLEPKNKVFQEALRNI 142 (148)
T ss_dssp HHHHHTCHHHHHHHHHHHHHHCSSCHHHHHHHHHH
T ss_pred HHHHcCCHHHHHHHHHHHHHcCCCcHHHHHHHHHH
Confidence 55555555555555555555555555555444444
No 173
>2if4_A ATFKBP42; FKBP-like, alpha-beta, TPR-like, alpha, signaling protein; 2.85A {Arabidopsis thaliana}
Probab=99.35 E-value=1.5e-12 Score=135.40 Aligned_cols=138 Identities=16% Similarity=0.101 Sum_probs=94.5
Q ss_pred HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCcH-----------------HHHHHHHHHHHHCCCHHHHHHHHHHHH
Q 006120 200 LPQIYVNLGIALEGEGMVLSACEYYRESAILCPTHF-----------------RALKLLGSALFGVGEYRAAVKALEEAI 262 (660)
Q Consensus 200 ~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~-----------------~~~~~lg~~~~~~g~~~~A~~~~~~al 262 (660)
.+..+..+|..+...|++++|+..|++++.+.|++. .++.++|.++..+|++++|+..+++++
T Consensus 178 ~a~~~~~~g~~~~~~g~~~~A~~~y~~Al~~~p~~~~~~~~~~~~~~~~~l~~~~~~nla~~~~~~g~~~~A~~~~~~al 257 (338)
T 2if4_A 178 AADRRKMDGNSLFKEEKLEEAMQQYEMAIAYMGDDFMFQLYGKYQDMALAVKNPCHLNIAACLIKLKRYDEAIGHCNIVL 257 (338)
T ss_dssp HHHHHHHHHHHTCSSSCCHHHHHHHHHHHHHSCHHHHHTCCHHHHHHHHHHHTHHHHHHHHHHHTTTCCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHhccchhhhhcccHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 678899999999999999999999999999999877 489999999999999999999999999
Q ss_pred HhCCCCHHHHHHHHHHHHhCCChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHcccCCh
Q 006120 263 FIKPDYADAHCDLASALHAMGEDERAIEVFQKAIDLKPGHVDALYNLGGLYMDLGAGETEEAKKALKEALKMTNRV 338 (660)
Q Consensus 263 ~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~La~~~~~~~~g~~~eA~~~~~~al~l~p~~ 338 (660)
+++|++..+|+++|.+|..+|++++|+..|+++++++|++..++..++.+..... +..+++...|++++...|..
T Consensus 258 ~~~p~~~~a~~~lg~a~~~~g~~~~A~~~l~~al~l~p~~~~a~~~L~~l~~~~~-~~~~~a~~~~~~~l~~~p~~ 332 (338)
T 2if4_A 258 TEEEKNPKALFRRGKAKAELGQMDSARDDFRKAQKYAPDDKAIRRELRALAEQEK-ALYQKQKEMYKGIFKGKDEG 332 (338)
T ss_dssp HHCTTCHHHHHHHHHHHHTTTCHHHHHHHHHHTTC-----------------------------------------
T ss_pred HhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHH-HHHHHHHHHHHHhhCCCCCC
Confidence 9999999999999999999999999999999999999999999999999855442 78889999999999998864
No 174
>3mv2_B Coatomer subunit epsilon; vesicular membrane coat COAT protein complex I, protein TRAN; 2.90A {Saccharomyces cerevisiae} PDB: 3mv3_B
Probab=99.35 E-value=2.9e-11 Score=121.73 Aligned_cols=190 Identities=10% Similarity=-0.063 Sum_probs=153.3
Q ss_pred HHHHHHHHHhhccCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC--CCHHHHHHHHHHHHHcCCHHHHHHHHHH
Q 006120 107 ELGVLRNRADGARSREEAFDGHMAIGRVLYEHQLFKEALVSFKRACELQP--TDVRPHFRAGNCLYVLGRYREAKEEYLL 184 (660)
Q Consensus 107 Al~~l~~a~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p--~~~~~~~~la~~~~~~g~~~~A~~~~~~ 184 (660)
++..+++.+...+..+ .++..+|.++...|++++|+..+.+.+..+| +..+++..++.++..+|+.+.|.+.+++
T Consensus 85 a~~~l~~l~~~~~~~~---~~~~~la~i~~~~g~~eeAL~~l~~~i~~~~~~~~lea~~l~vqi~L~~~r~d~A~k~l~~ 161 (310)
T 3mv2_B 85 NIEELENLLKDKQNSP---YELYLLATAQAILGDLDKSLETCVEGIDNDEAEGTTELLLLAIEVALLNNNVSTASTIFDN 161 (310)
T ss_dssp CCHHHHHTTTTSCCCH---HHHHHHHHHHHHHTCHHHHHHHHHHHHTSSCSTTHHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred HHHHHHHHHhcCCCCc---HHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCcCcHHHHHHHHHHHHHCCCHHHHHHHHHH
Confidence 7777777765532332 4567999999999999999999999999887 7899999999999999999999999999
Q ss_pred HHHHhccCCCchhchHHHHHHHHHHHHHHCC--CHHHHHHHHHHHHHhCCC--cHHHHHHHHHHHHHCCCHHHHHHHHHH
Q 006120 185 ALEAAETGGNQWAYLLPQIYVNLGIALEGEG--MVLSACEYYRESAILCPT--HFRALKLLGSALFGVGEYRAAVKALEE 260 (660)
Q Consensus 185 al~~~p~~~~~~~~~~~~~~~~la~~~~~~g--~~~~A~~~~~~al~~~p~--~~~~~~~lg~~~~~~g~~~~A~~~~~~ 260 (660)
+.+.+|+. .|......+...-|.+....| ++.+|...|+++....|+ ....+++ ++..+|++++|...++.
T Consensus 162 ~~~~~~d~--~~~~d~~l~~Laea~v~l~~g~~~~q~A~~~f~El~~~~p~~~~~~lLln---~~~~~g~~~eAe~~L~~ 236 (310)
T 3mv2_B 162 YTNAIEDT--VSGDNEMILNLAESYIKFATNKETATSNFYYYEELSQTFPTWKTQLGLLN---LHLQQRNIAEAQGIVEL 236 (310)
T ss_dssp HHHHSCHH--HHHHHHHHHHHHHHHHHHHHTCSTTTHHHHHHHHHHTTSCSHHHHHHHHH---HHHHHTCHHHHHHHHHH
T ss_pred HHhcCccc--cccchHHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHhCCCcccHHHHHH---HHHHcCCHHHHHHHHHH
Confidence 99988810 000003334444454455556 999999999999888887 3334444 89999999999999998
Q ss_pred HHHh----------CCCCHHHHHHHHHHHHhCCChHHHHHHHHHHHHhCCCCHHHH
Q 006120 261 AIFI----------KPDYADAHCDLASALHAMGEDERAIEVFQKAIDLKPGHVDAL 306 (660)
Q Consensus 261 al~~----------~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~a~ 306 (660)
+++. +|+++.++.+++.+...+|+ +|.++++++.+.+|+++-+.
T Consensus 237 l~~~~p~~~~k~~~~p~~~~~LaN~i~l~~~lgk--~a~~l~~qL~~~~P~hp~i~ 290 (310)
T 3mv2_B 237 LLSDYYSVEQKENAVLYKPTFLANQITLALMQGL--DTEDLTNQLVKLDHEHAFIK 290 (310)
T ss_dssp HHSHHHHTTTCHHHHSSHHHHHHHHHHHHHHTTC--TTHHHHHHHHHTTCCCHHHH
T ss_pred HHHhcccccccccCCCCCHHHHHHHHHHHHHhCh--HHHHHHHHHHHhCCCChHHH
Confidence 8876 48899999999999999998 89999999999999998644
No 175
>2dba_A Smooth muscle cell associated protein-1, isoform 2; tetratricopeptide repeat, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.34 E-value=2.2e-11 Score=109.00 Aligned_cols=108 Identities=23% Similarity=0.309 Sum_probs=103.3
Q ss_pred hCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCC---HHHHHHHHHHHHhCCChHHHHHHHHHHHHhCCCCHHHH
Q 006120 230 LCPTHFRALKLLGSALFGVGEYRAAVKALEEAIFIKPDY---ADAHCDLASALHAMGEDERAIEVFQKAIDLKPGHVDAL 306 (660)
Q Consensus 230 ~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~---~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~a~ 306 (660)
..|.....+..+|..+...|++++|+..|+++++..|++ ..++.++|.++...|++++|+..++++++++|+++.++
T Consensus 23 ~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~ 102 (148)
T 2dba_A 23 PGASSVEQLRKEGNELFKCGDYGGALAAYTQALGLDATPQDQAVLHRNRAACHLKLEDYDKAETEASKAIEKDGGDVKAL 102 (148)
T ss_dssp TTCCCHHHHHHHHHHHHTTTCHHHHHHHHHHHHTSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTSCCHHHH
T ss_pred cchHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHcccchHHHHHHHHHHHHHHHHccHHHHHHHHHHHHhhCccCHHHH
Confidence 467889999999999999999999999999999999987 89999999999999999999999999999999999999
Q ss_pred HHHHHHHHHhcCCCHHHHHHHHHHHHcccCChh
Q 006120 307 YNLGGLYMDLGAGETEEAKKALKEALKMTNRVE 339 (660)
Q Consensus 307 ~~La~~~~~~~~g~~~eA~~~~~~al~l~p~~~ 339 (660)
+.+|.++... |++++|+.+|+++++++|+..
T Consensus 103 ~~~a~~~~~~--~~~~~A~~~~~~al~~~p~~~ 133 (148)
T 2dba_A 103 YRRSQALEKL--GRLDQAVLDLQRCVSLEPKNK 133 (148)
T ss_dssp HHHHHHHHHH--TCHHHHHHHHHHHHHHCSSCH
T ss_pred HHHHHHHHHc--CCHHHHHHHHHHHHHcCCCcH
Confidence 9999999999 999999999999999998743
No 176
>1elr_A TPR2A-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, protein binding, chaperone; 1.90A {Homo sapiens} SCOP: a.118.8.1 PDB: 3esk_A 3fwv_A
Probab=99.32 E-value=1.7e-11 Score=106.90 Aligned_cols=116 Identities=18% Similarity=0.153 Sum_probs=92.4
Q ss_pred HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCC-------HHHH
Q 006120 200 LPQIYVNLGIALEGEGMVLSACEYYRESAILCPTHFRALKLLGSALFGVGEYRAAVKALEEAIFIKPDY-------ADAH 272 (660)
Q Consensus 200 ~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~-------~~~~ 272 (660)
.+..+..+|.++...|++++|+.++++++...|.++.++..+|.++...|++++|+.++++++...|++ ..++
T Consensus 3 ~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~ 82 (131)
T 1elr_A 3 QALKEKELGNDAYKKKDFDTALKHYDKAKELDPTNMTYITNQAAVYFEKGDYNKCRELCEKAIEVGRENREDYRQIAKAY 82 (131)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHSTTCHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHhccHHHHHHHHHHHHhhccccchhHHHHHHHH
Confidence 456778888888888888888888888888888888888888888888888888888888888887766 7778
Q ss_pred HHHHHHHHhCCChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHh
Q 006120 273 CDLASALHAMGEDERAIEVFQKAIDLKPGHVDALYNLGGLYMDL 316 (660)
Q Consensus 273 ~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~La~~~~~~ 316 (660)
..+|.++...|++++|+.+|+++++..| ++..+..++.+...+
T Consensus 83 ~~la~~~~~~~~~~~A~~~~~~~~~~~~-~~~~~~~l~~~~~~~ 125 (131)
T 1elr_A 83 ARIGNSYFKEEKYKDAIHFYNKSLAEHR-TPDVLKKCQQAEKIL 125 (131)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHCC-CHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhccHHHHHHHHHHHHHhCC-CHHHHHHHHHHHHHH
Confidence 8888888888888888888888888877 477777777766554
No 177
>1ihg_A Cyclophilin 40; ppiase immunophilin tetratricopeptide, isomerase; 1.80A {Bos taurus} SCOP: a.118.8.1 b.62.1.1 PDB: 1iip_A
Probab=99.32 E-value=1.6e-11 Score=129.19 Aligned_cols=126 Identities=18% Similarity=0.226 Sum_probs=117.8
Q ss_pred HHHHHHHHHHHHHHCCCHHHHHHHHHHHHH----------------hCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Q 006120 200 LPQIYVNLGIALEGEGMVLSACEYYRESAI----------------LCPTHFRALKLLGSALFGVGEYRAAVKALEEAIF 263 (660)
Q Consensus 200 ~~~~~~~la~~~~~~g~~~~A~~~~~~al~----------------~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~ 263 (660)
.+..+..+|..+...|++++|+..|+++++ ..|....++.++|.++..+|++++|+.+++++++
T Consensus 222 ~a~~~~~~g~~~~~~g~~~~Ai~~y~kAl~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~g~~~~A~~~~~~al~ 301 (370)
T 1ihg_A 222 ISEDLKNIGNTFFKSQNWEMAIKKYTKVLRYVEGSRAAAEDADGAKLQPVALSCVLNIGACKLKMSDWQGAVDSCLEALE 301 (370)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHSCHHHHGGGHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHhhcCccccChHHHHHHHHHHHHHHHHHHHHHHhccCHHHHHHHHHHHHH
Confidence 567789999999999999999999999998 6777889999999999999999999999999999
Q ss_pred hCCCCHHHHHHHHHHHHhCCChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCCCHHHHHHH
Q 006120 264 IKPDYADAHCDLASALHAMGEDERAIEVFQKAIDLKPGHVDALYNLGGLYMDLGAGETEEAKKA 327 (660)
Q Consensus 264 ~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~La~~~~~~~~g~~~eA~~~ 327 (660)
++|+++.+++.+|.+|..+|++++|+..|+++++++|++..++..++.++..+ ++.+++.+.
T Consensus 302 ~~p~~~~a~~~lg~~~~~~g~~~eA~~~l~~Al~l~P~~~~~~~~l~~~~~~~--~~~~~a~k~ 363 (370)
T 1ihg_A 302 IDPSNTKALYRRAQGWQGLKEYDQALADLKKAQEIAPEDKAIQAELLKVKQKI--KAQKDKEKA 363 (370)
T ss_dssp TCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHH--HHHHHHHHC
T ss_pred hCchhHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHH--HHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999988 777777543
No 178
>2if4_A ATFKBP42; FKBP-like, alpha-beta, TPR-like, alpha, signaling protein; 2.85A {Arabidopsis thaliana}
Probab=99.32 E-value=1.6e-12 Score=135.19 Aligned_cols=158 Identities=16% Similarity=0.108 Sum_probs=96.7
Q ss_pred HHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhccCCCchhchHH
Q 006120 122 EEAFDGHMAIGRVLYEHQLFKEALVSFKRACELQPTDVRPHFRAGNCLYVLGRYREAKEEYLLALEAAETGGNQWAYLLP 201 (660)
Q Consensus 122 ~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~ 201 (660)
...+..+..+|..++..|++++|+..|++++...|++.. +...+++.++...+ ..
T Consensus 176 ~~~a~~~~~~g~~~~~~g~~~~A~~~y~~Al~~~p~~~~--------~~~~~~~~~~~~~l-----------------~~ 230 (338)
T 2if4_A 176 IGAADRRKMDGNSLFKEEKLEEAMQQYEMAIAYMGDDFM--------FQLYGKYQDMALAV-----------------KN 230 (338)
T ss_dssp HHHHHHHHHHHHHTCSSSCCHHHHHHHHHHHHHSCHHHH--------HTCCHHHHHHHHHH-----------------HT
T ss_pred HHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHhccchh--------hhhcccHHHHHHHH-----------------HH
Confidence 445677888888888888899999989888888876441 22233344433221 22
Q ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHH-H
Q 006120 202 QIYVNLGIALEGEGMVLSACEYYRESAILCPTHFRALKLLGSALFGVGEYRAAVKALEEAIFIKPDYADAHCDLASAL-H 280 (660)
Q Consensus 202 ~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~-~ 280 (660)
.+++++|.++..+|++++|+.+++++++++|++..+++++|.++..+|++++|+..|+++++++|++..++..++.+. .
T Consensus 231 ~~~~nla~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~a~~~~g~~~~A~~~l~~al~l~p~~~~a~~~L~~l~~~ 310 (338)
T 2if4_A 231 PCHLNIAACLIKLKRYDEAIGHCNIVLTEEEKNPKALFRRGKAKAELGQMDSARDDFRKAQKYAPDDKAIRRELRALAEQ 310 (338)
T ss_dssp HHHHHHHHHHHTTTCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTTTCHHHHHHHHHHTTC------------------
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHH
Confidence 578999999999999999999999999999999999999999999999999999999999999999999999999984 4
Q ss_pred hCCChHHHHHHHHHHHHhCCCCHH
Q 006120 281 AMGEDERAIEVFQKAIDLKPGHVD 304 (660)
Q Consensus 281 ~~g~~~~A~~~~~~al~~~p~~~~ 304 (660)
..+..+++...|.+++...|.++.
T Consensus 311 ~~~~~~~a~~~~~~~l~~~p~~~~ 334 (338)
T 2if4_A 311 EKALYQKQKEMYKGIFKGKDEGGA 334 (338)
T ss_dssp ------------------------
T ss_pred HHHHHHHHHHHHHHhhCCCCCCCC
Confidence 567788899999999999987653
No 179
>4b4t_Q 26S proteasome regulatory subunit RPN6; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=99.32 E-value=4.8e-11 Score=127.82 Aligned_cols=203 Identities=8% Similarity=-0.066 Sum_probs=172.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhccCc--------------HHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC-
Q 006120 94 WEESTHDYAVFVKELGVLRNRADGARSR--------------EEAFDGHMAIGRVLYEHQLFKEALVSFKRACELQPTD- 158 (660)
Q Consensus 94 l~~~~~~~g~~~~Al~~l~~a~~~~~~~--------------~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~- 158 (660)
-+..+...|++.+|++.+.++++..+.. .....++..+|.+|...|++++|++++.+++...+..
T Consensus 10 ~a~~l~~~~~y~eA~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~al~~l~~~y~~~~~~~~a~~~~~~~~~~~~~~~ 89 (434)
T 4b4t_Q 10 EARRLVNEKQYNEAEQVYLSLLDKDSSQSSAAAGASVDDKRRNEQETSILELGQLYVTMGAKDKLREFIPHSTEYMMQFA 89 (434)
T ss_dssp HHHHHHHHTCHHHHHHHHHHHHHSCCCSSSBSSSSSBCSHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHTHHHHHTSC
T ss_pred HHHHHHHCCCHHHHHHHHHHHHhhCcccchhHHHHHHHHHHhhhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHcc
Confidence 3556778899999999999999876643 2233578999999999999999999999999875543
Q ss_pred -----HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhccCCCchhchHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh---
Q 006120 159 -----VRPHFRAGNCLYVLGRYREAKEEYLLALEAAETGGNQWAYLLPQIYVNLGIALEGEGMVLSACEYYRESAIL--- 230 (660)
Q Consensus 159 -----~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~--- 230 (660)
..+...++.++...|++++|+.++++++...+....... ...++.++|.++...|++.+|+.++++++..
T Consensus 90 ~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~--~~~~~~~la~~~~~~g~~~~A~~~l~~~~~~~~~ 167 (434)
T 4b4t_Q 90 KSKTVKVLKTLIEKFEQVPDSLDDQIFVCEKSIEFAKREKRVFL--KHSLSIKLATLHYQKKQYKDSLALINDLLREFKK 167 (434)
T ss_dssp HHHHHHHHHHHHHHHCSCCSCHHHHHHHHHHHHHHHHHSSCCSS--HHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTT
T ss_pred chHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHhCccHH--HHHHHHHHHHHHHHccChHHHHHHHHHHHHHHHh
Confidence 235667888888999999999999999999887665544 7889999999999999999999999999875
Q ss_pred ---CCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCC---CC----HHHHHHHHHHHHhCCChHHHHHHHHHHHHh
Q 006120 231 ---CPTHFRALKLLGSALFGVGEYRAAVKALEEAIFIKP---DY----ADAHCDLASALHAMGEDERAIEVFQKAIDL 298 (660)
Q Consensus 231 ---~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p---~~----~~~~~~la~~~~~~g~~~~A~~~~~~al~~ 298 (660)
.+....++..+|.++...|++++|..++++++.+.+ +. ...+..+|.++...+++++|..+|.+++..
T Consensus 168 ~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~g~~~~~~~~y~~A~~~~~~a~~~ 245 (434)
T 4b4t_Q 168 LDDKPSLVDVHLLESKVYHKLRNLAKSKASLTAARTAANSIYCPTQTVAELDLMSGILHCEDKDYKTAFSYFFESFES 245 (434)
T ss_dssp SSCSTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHTTSSSCHHHHHHHHHHHHHH
T ss_pred cccchhHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHhhcCCCchHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHH
Confidence 234477999999999999999999999999998742 22 456788899999999999999999999875
No 180
>1elr_A TPR2A-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, protein binding, chaperone; 1.90A {Homo sapiens} SCOP: a.118.8.1 PDB: 3esk_A 3fwv_A
Probab=99.32 E-value=2.6e-11 Score=105.71 Aligned_cols=118 Identities=16% Similarity=0.237 Sum_probs=107.7
Q ss_pred CcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhCCChHHHHHHHHHHHHhCCCC-------HHH
Q 006120 233 THFRALKLLGSALFGVGEYRAAVKALEEAIFIKPDYADAHCDLASALHAMGEDERAIEVFQKAIDLKPGH-------VDA 305 (660)
Q Consensus 233 ~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~-------~~a 305 (660)
..+..+..+|.++...|++++|+..+++++...|.++.++.++|.++...|++++|+.++++++...|.+ ..+
T Consensus 2 ~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~ 81 (131)
T 1elr_A 2 KQALKEKELGNDAYKKKDFDTALKHYDKAKELDPTNMTYITNQAAVYFEKGDYNKCRELCEKAIEVGRENREDYRQIAKA 81 (131)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHSTTCHHHHHHH
T ss_pred hHHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHhccHHHHHHHHHHHHhhccccchhHHHHHHH
Confidence 4567899999999999999999999999999999999999999999999999999999999999998877 889
Q ss_pred HHHHHHHHHHhcCCCHHHHHHHHHHHHcccCChhHHHHHHHHHHHHH
Q 006120 306 LYNLGGLYMDLGAGETEEAKKALKEALKMTNRVELHDAVSHLKQLQK 352 (660)
Q Consensus 306 ~~~La~~~~~~~~g~~~eA~~~~~~al~l~p~~~~~~~~~~l~~l~~ 352 (660)
+..+|.++... |++++|+.+|++++++.|+......+..+....+
T Consensus 82 ~~~la~~~~~~--~~~~~A~~~~~~~~~~~~~~~~~~~l~~~~~~~~ 126 (131)
T 1elr_A 82 YARIGNSYFKE--EKYKDAIHFYNKSLAEHRTPDVLKKCQQAEKILK 126 (131)
T ss_dssp HHHHHHHHHHT--TCHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHh--ccHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHH
Confidence 99999999999 9999999999999999998776666666655444
No 181
>2xev_A YBGF; tetratricopeptide, alpha-helical, metal binding; 1.57A {Xanthomonas campestris}
Probab=99.30 E-value=7.8e-11 Score=103.02 Aligned_cols=112 Identities=21% Similarity=0.226 Sum_probs=60.7
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHhccCCCchhchHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCc---HHHH
Q 006120 162 HFRAGNCLYVLGRYREAKEEYLLALEAAETGGNQWAYLLPQIYVNLGIALEGEGMVLSACEYYRESAILCPTH---FRAL 238 (660)
Q Consensus 162 ~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~---~~~~ 238 (660)
++.+|.++...|++++|+..++++++..|.... .+.+++.+|.++...|++++|+..|++++...|++ +.++
T Consensus 5 ~~~~a~~~~~~~~~~~A~~~~~~~~~~~p~~~~-----~~~~~~~lg~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~ 79 (129)
T 2xev_A 5 AYNVAFDALKNGKYDDASQLFLSFLELYPNGVY-----TPNALYWLGESYYATRNFQLAEAQFRDLVSRYPTHDKAAGGL 79 (129)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHCSSSTT-----HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTSTTHHHHH
T ss_pred HHHHHHHHHHhCCHHHHHHHHHHHHHHCCCCcc-----cHHHHHHHHHHHHHhccHHHHHHHHHHHHHHCCCCcccHHHH
Confidence 444555555555555555555555555554211 22455555555555555555555555555555555 5555
Q ss_pred HHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHH
Q 006120 239 KLLGSALFGVGEYRAAVKALEEAIFIKPDYADAHCDLASA 278 (660)
Q Consensus 239 ~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~ 278 (660)
+.+|.++...|++++|+..|++++...|++..+...+..+
T Consensus 80 ~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~a~~~l 119 (129)
T 2xev_A 80 LKLGLSQYGEGKNTEAQQTLQQVATQYPGSDAARVAQERL 119 (129)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHSTTSHHHHHHHHHH
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHHCCCChHHHHHHHHH
Confidence 5555555555555555555555555555555544444433
No 182
>1ihg_A Cyclophilin 40; ppiase immunophilin tetratricopeptide, isomerase; 1.80A {Bos taurus} SCOP: a.118.8.1 b.62.1.1 PDB: 1iip_A
Probab=99.30 E-value=3.5e-11 Score=126.48 Aligned_cols=142 Identities=15% Similarity=0.155 Sum_probs=118.4
Q ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhccCCCchhchHHHH
Q 006120 124 AFDGHMAIGRVLYEHQLFKEALVSFKRACELQPTDVRPHFRAGNCLYVLGRYREAKEEYLLALEAAETGGNQWAYLLPQI 203 (660)
Q Consensus 124 ~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~ 203 (660)
....+..+|..++..|++++|+..|+++++..+..+ +....++..+..|. ...+
T Consensus 222 ~a~~~~~~g~~~~~~g~~~~Ai~~y~kAl~~~~~~~------------------~~~~~~~~~~~~~~--------~~~~ 275 (370)
T 1ihg_A 222 ISEDLKNIGNTFFKSQNWEMAIKKYTKVLRYVEGSR------------------AAAEDADGAKLQPV--------ALSC 275 (370)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHH------------------HHSCHHHHGGGHHH--------HHHH
T ss_pred HHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHhhcCc------------------cccChHHHHHHHHH--------HHHH
Confidence 346677777788888888888888877777543321 11113333445665 7899
Q ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhCC
Q 006120 204 YVNLGIALEGEGMVLSACEYYRESAILCPTHFRALKLLGSALFGVGEYRAAVKALEEAIFIKPDYADAHCDLASALHAMG 283 (660)
Q Consensus 204 ~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g 283 (660)
+.++|.++..+|++++|+.+++++++++|+++.+++.+|.++..+|++++|+..|+++++++|++..++..++.++..++
T Consensus 276 ~~nla~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~eA~~~l~~Al~l~P~~~~~~~~l~~~~~~~~ 355 (370)
T 1ihg_A 276 VLNIGACKLKMSDWQGAVDSCLEALEIDPSNTKALYRRAQGWQGLKEYDQALADLKKAQEIAPEDKAIQAELLKVKQKIK 355 (370)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhccCHHHHHHHHHHHHHhCchhHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ChHHHHHH
Q 006120 284 EDERAIEV 291 (660)
Q Consensus 284 ~~~~A~~~ 291 (660)
+++++...
T Consensus 356 ~~~~a~k~ 363 (370)
T 1ihg_A 356 AQKDKEKA 363 (370)
T ss_dssp HHHHHHHC
T ss_pred HHHHHHHH
Confidence 88887654
No 183
>2kck_A TPR repeat; tetratricopeptide repeat, structural genomics, unknown function, PSI-2, protein structure initiative; NMR {Methanococcus maripaludis}
Probab=99.29 E-value=1.4e-11 Score=104.23 Aligned_cols=103 Identities=21% Similarity=0.245 Sum_probs=86.2
Q ss_pred HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCC--CHHHHHHHHH
Q 006120 200 LPQIYVNLGIALEGEGMVLSACEYYRESAILCPTHFRALKLLGSALFGVGEYRAAVKALEEAIFIKPD--YADAHCDLAS 277 (660)
Q Consensus 200 ~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~--~~~~~~~la~ 277 (660)
.+.++..+|.++...|++++|+.+++++++..|.+..++..+|.++...|++++|+..+++++++.|+ +..++..+|.
T Consensus 5 ~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~l~~ 84 (112)
T 2kck_A 5 NPEEYYLEGVLQYDAGNYTESIDLFEKAIQLDPEESKYWLMKGKALYNLERYEEAVDCYNYVINVIEDEYNKDVWAAKAD 84 (112)
T ss_dssp STTGGGGHHHHHHSSCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSCCTTCHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhCcCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCcccchHHHHHHHHH
Confidence 34566778888888888888888888888888888888888888888888888888888888888888 8888888888
Q ss_pred HHHhC-CChHHHHHHHHHHHHhCCCC
Q 006120 278 ALHAM-GEDERAIEVFQKAIDLKPGH 302 (660)
Q Consensus 278 ~~~~~-g~~~~A~~~~~~al~~~p~~ 302 (660)
++... |++++|+.++++++...|..
T Consensus 85 ~~~~~~~~~~~A~~~~~~~~~~~p~~ 110 (112)
T 2kck_A 85 ALRYIEGKEVEAEIAEARAKLEHHHH 110 (112)
T ss_dssp HHTTCSSCSHHHHHHHHHHGGGCCCC
T ss_pred HHHHHhCCHHHHHHHHHHHhhcccCC
Confidence 88888 88888888888888887764
No 184
>4e6h_A MRNA 3'-END-processing protein RNA14; HAT domain, heat repeat, CLP1, PCF11, structural protein; 2.30A {Kluyveromyces lactis} PDB: 4e85_A 4eba_A
Probab=99.29 E-value=3.7e-10 Score=127.13 Aligned_cols=230 Identities=10% Similarity=0.013 Sum_probs=194.8
Q ss_pred HHHHHHHHHHhhccCcHHHHHHHHHHHHHHHHcCCHHHHH-HHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHH
Q 006120 106 KELGVLRNRADGARSREEAFDGHMAIGRVLYEHQLFKEAL-VSFKRACELQPTDVRPHFRAGNCLYVLGRYREAKEEYLL 184 (660)
Q Consensus 106 ~Al~~l~~a~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~-~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~ 184 (660)
.....|++++...+..+ ..|+..+......|+.++|. ..|++++...|.....|...+......|++++|...|++
T Consensus 327 Rv~~~Ye~aL~~~p~~~---~lW~~ya~~~~~~~~~~~a~r~il~rAi~~~P~s~~Lwl~~a~~ee~~~~~e~aR~iyek 403 (679)
T 4e6h_A 327 RMTYVYMQAAQHVCFAP---EIWFNMANYQGEKNTDSTVITKYLKLGQQCIPNSAVLAFSLSEQYELNTKIPEIETTILS 403 (679)
T ss_dssp HHHHHHHHHHHHTTTCH---HHHHHHHHHHHHHSCCTTHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCCH---HHHHHHHHHHHhcCcHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhCCHHHHHHHHHH
Confidence 44567888998888765 88999999999999999997 999999999999999999999999999999999999999
Q ss_pred HHHHhcc--------CCCc------hhchHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh-CCCcHHHHHHHHHHHHHCC
Q 006120 185 ALEAAET--------GGNQ------WAYLLPQIYVNLGIALEGEGMVLSACEYYRESAIL-CPTHFRALKLLGSALFGVG 249 (660)
Q Consensus 185 al~~~p~--------~~~~------~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~-~p~~~~~~~~lg~~~~~~g 249 (660)
++...+. .+.. .......+|...+....+.|..+.|...|.+|++. .+....+|...+.+....+
T Consensus 404 ~l~~l~~~~~~~~~~~p~~~~~~~~~~~~~~~vWi~y~~~erR~~~l~~AR~vf~~A~~~~~~~~~~lyi~~A~lE~~~~ 483 (679)
T 4e6h_A 404 CIDRIHLDLAALMEDDPTNESAINQLKSKLTYVYCVYMNTMKRIQGLAASRKIFGKCRRLKKLVTPDIYLENAYIEYHIS 483 (679)
T ss_dssp HHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHTGGGSCTHHHHHHHHHHHTTT
T ss_pred HHHHHHHHhhhhhhccCcchhhhhhhccchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHhC
Confidence 9986421 1000 00004567888899888999999999999999987 4455677887888877765
Q ss_pred -CHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhCCChHHHHHHHHHHHHhCCC---CHHHHHHHHHHHHHhcCCCHHHHH
Q 006120 250 -EYRAAVKALEEAIFIKPDYADAHCDLASALHAMGEDERAIEVFQKAIDLKPG---HVDALYNLGGLYMDLGAGETEEAK 325 (660)
Q Consensus 250 -~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~---~~~a~~~La~~~~~~~~g~~~eA~ 325 (660)
+++.|...|+++++..|+++..|...+......|+.+.|...|++++...|+ ....|......-... |+.+.+.
T Consensus 484 ~d~e~Ar~ife~~Lk~~p~~~~~w~~y~~fe~~~~~~~~AR~lferal~~~~~~~~~~~lw~~~~~fE~~~--G~~~~~~ 561 (679)
T 4e6h_A 484 KDTKTACKVLELGLKYFATDGEYINKYLDFLIYVNEESQVKSLFESSIDKISDSHLLKMIFQKVIFFESKV--GSLNSVR 561 (679)
T ss_dssp SCCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHTTTSSSTTHHHHHHHHHHHHHHHT--CCSHHHH
T ss_pred CCHHHHHHHHHHHHHHCCCchHHHHHHHHHHHhCCCHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHc--CCHHHHH
Confidence 4899999999999999999999999999999999999999999999999883 456777777777776 9999999
Q ss_pred HHHHHHHcccCChhH
Q 006120 326 KALKEALKMTNRVEL 340 (660)
Q Consensus 326 ~~~~~al~l~p~~~~ 340 (660)
..++++.+..|+...
T Consensus 562 ~v~~R~~~~~P~~~~ 576 (679)
T 4e6h_A 562 TLEKRFFEKFPEVNK 576 (679)
T ss_dssp HHHHHHHHHSTTCCH
T ss_pred HHHHHHHHhCCCCcH
Confidence 999999999998543
No 185
>1zu2_A Mitochondrial import receptor subunit TOM20-3; TPR, tetratricopeptide repeat like, TPR-like, transport protein; NMR {Arabidopsis thaliana} SCOP: a.118.8.1
Probab=99.28 E-value=9.3e-12 Score=112.03 Aligned_cols=92 Identities=20% Similarity=0.294 Sum_probs=67.4
Q ss_pred HHCCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHCCCH----------HHHHHHHHHHHHhCCCCHHHHHHHHHHHHh
Q 006120 212 EGEGMVLSACEYYRESAILCPTHFRALKLLGSALFGVGEY----------RAAVKALEEAIFIKPDYADAHCDLASALHA 281 (660)
Q Consensus 212 ~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~----------~~A~~~~~~al~~~p~~~~~~~~la~~~~~ 281 (660)
.+.+.+++|+..++++++++|+++.+|.++|.++...+++ ++|+..|++|++++|++..+|+++|.+|..
T Consensus 13 ~r~~~feeA~~~~~~Ai~l~P~~aea~~n~G~~l~~l~~~~~g~~al~~~~eAi~~le~AL~ldP~~~~A~~~LG~ay~~ 92 (158)
T 1zu2_A 13 DRILLFEQIRQDAENTYKSNPLDADNLTRWGGVLLELSQFHSISDAKQMIQEAITKFEEALLIDPKKDEAVWCIGNAYTS 92 (158)
T ss_dssp HHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH
T ss_pred HHHhHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHhcccchhhhhHhHHHHHHHHHHHHHHhCcCcHHHHHHHHHHHHH
Confidence 3456678888888888888888888888888888877765 477777777777777777777777777776
Q ss_pred CC-----------ChHHHHHHHHHHHHhCCCCH
Q 006120 282 MG-----------EDERAIEVFQKAIDLKPGHV 303 (660)
Q Consensus 282 ~g-----------~~~~A~~~~~~al~~~p~~~ 303 (660)
+| ++++|+.+|++|++++|++.
T Consensus 93 lg~l~P~~~~a~g~~~eA~~~~~kAl~l~P~~~ 125 (158)
T 1zu2_A 93 FAFLTPDETEAKHNFDLATQFFQQAVDEQPDNT 125 (158)
T ss_dssp HHHHCCCHHHHHHHHHHHHHHHHHHHHHCTTCH
T ss_pred hcccCcchhhhhccHHHHHHHHHHHHHhCCCCH
Confidence 64 56666666666666666654
No 186
>3k9i_A BH0479 protein; putative protein binding protein, structural genomics, joint for structural genomics, JCSG; 2.71A {Bacillus halodurans}
Probab=99.26 E-value=6.3e-12 Score=108.70 Aligned_cols=101 Identities=21% Similarity=0.209 Sum_probs=79.2
Q ss_pred HCCCHHHHHHHHHHHHHh---CCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhCCChHHHH
Q 006120 213 GEGMVLSACEYYRESAIL---CPTHFRALKLLGSALFGVGEYRAAVKALEEAIFIKPDYADAHCDLASALHAMGEDERAI 289 (660)
Q Consensus 213 ~~g~~~~A~~~~~~al~~---~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~ 289 (660)
.+|++++|+.+|++++++ +|+++.++.++|.++...|++++|+..++++++++|+++.++.++|.++..+|++++|+
T Consensus 2 ~~g~~~~A~~~~~~al~~~~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~ 81 (117)
T 3k9i_A 2 VLGLEAQAVPYYEKAIASGLQGKDLAECYLGLGSTFRTLGEYRKAEAVLANGVKQFPNHQALRVFYAMVLYNLGRYEQGV 81 (117)
T ss_dssp -----CCCHHHHHHHHSSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHH
T ss_pred CCCcHHHHHHHHHHHHHcCCCCccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCchHHHHHHHHHHHHcCCHHHHH
Confidence 357888888888888888 57778888888888888888888888888888888888888888888888888888888
Q ss_pred HHHHHHHHhCCCCHHHHHHHHHHH
Q 006120 290 EVFQKAIDLKPGHVDALYNLGGLY 313 (660)
Q Consensus 290 ~~~~~al~~~p~~~~a~~~La~~~ 313 (660)
..++++++..|+++........+.
T Consensus 82 ~~~~~al~~~p~~~~~~~~~~ai~ 105 (117)
T 3k9i_A 82 ELLLKIIAETSDDETIQSYKQAIL 105 (117)
T ss_dssp HHHHHHHHHHCCCHHHHHTHHHHH
T ss_pred HHHHHHHHhCCCcHHHHHHHHHHH
Confidence 888888888888876654444333
No 187
>2kck_A TPR repeat; tetratricopeptide repeat, structural genomics, unknown function, PSI-2, protein structure initiative; NMR {Methanococcus maripaludis}
Probab=99.25 E-value=2.2e-11 Score=103.05 Aligned_cols=106 Identities=16% Similarity=0.085 Sum_probs=84.3
Q ss_pred CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhccCCCchhchHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCC-
Q 006120 155 QPTDVRPHFRAGNCLYVLGRYREAKEEYLLALEAAETGGNQWAYLLPQIYVNLGIALEGEGMVLSACEYYRESAILCPT- 233 (660)
Q Consensus 155 ~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~- 233 (660)
+|+++.++..+|.++...|++++|+..++++++..|. ...++..+|.++...|++++|+.+++++++..|.
T Consensus 2 ~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~--------~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~~~~ 73 (112)
T 2kck_A 2 VDQNPEEYYLEGVLQYDAGNYTESIDLFEKAIQLDPE--------ESKYWLMKGKALYNLERYEEAVDCYNYVINVIEDE 73 (112)
T ss_dssp CCSSTTGGGGHHHHHHSSCCHHHHHHHHHHHHHHCCC--------CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSCCT
T ss_pred CCCcHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhCcC--------CHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCccc
Confidence 4666777777888888888888888888888887776 5677778888888888888888888888888888
Q ss_pred -cHHHHHHHHHHHHHC-CCHHHHHHHHHHHHHhCCCC
Q 006120 234 -HFRALKLLGSALFGV-GEYRAAVKALEEAIFIKPDY 268 (660)
Q Consensus 234 -~~~~~~~lg~~~~~~-g~~~~A~~~~~~al~~~p~~ 268 (660)
+..++..+|.++... |++++|+.++++++...|.+
T Consensus 74 ~~~~~~~~l~~~~~~~~~~~~~A~~~~~~~~~~~p~~ 110 (112)
T 2kck_A 74 YNKDVWAAKADALRYIEGKEVEAEIAEARAKLEHHHH 110 (112)
T ss_dssp TCHHHHHHHHHHHTTCSSCSHHHHHHHHHHGGGCCCC
T ss_pred chHHHHHHHHHHHHHHhCCHHHHHHHHHHHhhcccCC
Confidence 788888888888888 88888888888888877754
No 188
>3k9i_A BH0479 protein; putative protein binding protein, structural genomics, joint for structural genomics, JCSG; 2.71A {Bacillus halodurans}
Probab=99.23 E-value=2.6e-11 Score=104.75 Aligned_cols=104 Identities=21% Similarity=0.240 Sum_probs=90.1
Q ss_pred HcCCHHHHHHHHHHHHHH---hccCCCchhchHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHH
Q 006120 171 VLGRYREAKEEYLLALEA---AETGGNQWAYLLPQIYVNLGIALEGEGMVLSACEYYRESAILCPTHFRALKLLGSALFG 247 (660)
Q Consensus 171 ~~g~~~~A~~~~~~al~~---~p~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~ 247 (660)
.+|++++|+..|++++++ +|. .+.++.++|.++..+|++++|+.+++++++.+|+++.++.++|.++..
T Consensus 2 ~~g~~~~A~~~~~~al~~~~~~p~--------~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~ 73 (117)
T 3k9i_A 2 VLGLEAQAVPYYEKAIASGLQGKD--------LAECYLGLGSTFRTLGEYRKAEAVLANGVKQFPNHQALRVFYAMVLYN 73 (117)
T ss_dssp -----CCCHHHHHHHHSSCCCHHH--------HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH
T ss_pred CCCcHHHHHHHHHHHHHcCCCCcc--------HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCchHHHHHHHHHHHH
Confidence 468999999999999999 577 889999999999999999999999999999999999999999999999
Q ss_pred CCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhC
Q 006120 248 VGEYRAAVKALEEAIFIKPDYADAHCDLASALHAM 282 (660)
Q Consensus 248 ~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~ 282 (660)
.|++++|+..+++++...|+++.+......+....
T Consensus 74 ~g~~~~A~~~~~~al~~~p~~~~~~~~~~ai~~~~ 108 (117)
T 3k9i_A 74 LGRYEQGVELLLKIIAETSDDETIQSYKQAILFYA 108 (117)
T ss_dssp HTCHHHHHHHHHHHHHHHCCCHHHHHTHHHHHHHT
T ss_pred cCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHH
Confidence 99999999999999999999987765444443333
No 189
>1zu2_A Mitochondrial import receptor subunit TOM20-3; TPR, tetratricopeptide repeat like, TPR-like, transport protein; NMR {Arabidopsis thaliana} SCOP: a.118.8.1
Probab=99.23 E-value=1.8e-11 Score=110.22 Aligned_cols=90 Identities=18% Similarity=0.183 Sum_probs=76.9
Q ss_pred HcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCH----------HHHHHHHHHHHHHhccCCCchhchHHHHHHH
Q 006120 137 EHQLFKEALVSFKRACELQPTDVRPHFRAGNCLYVLGRY----------REAKEEYLLALEAAETGGNQWAYLLPQIYVN 206 (660)
Q Consensus 137 ~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~----------~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~ 206 (660)
+.+.+++|+..++++++++|+++++|+++|.++..++++ ++|+..|+++++++|+ ...++++
T Consensus 14 r~~~feeA~~~~~~Ai~l~P~~aea~~n~G~~l~~l~~~~~g~~al~~~~eAi~~le~AL~ldP~--------~~~A~~~ 85 (158)
T 1zu2_A 14 RILLFEQIRQDAENTYKSNPLDADNLTRWGGVLLELSQFHSISDAKQMIQEAITKFEEALLIDPK--------KDEAVWC 85 (158)
T ss_dssp HHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHCTT--------CHHHHHH
T ss_pred HHhHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHhcccchhhhhHhHHHHHHHHHHHHHHhCcC--------cHHHHHH
Confidence 456789999999999999999999999999999998875 5999999999999999 8899999
Q ss_pred HHHHHHHCC-----------CHHHHHHHHHHHHHhCCCc
Q 006120 207 LGIALEGEG-----------MVLSACEYYRESAILCPTH 234 (660)
Q Consensus 207 la~~~~~~g-----------~~~~A~~~~~~al~~~p~~ 234 (660)
+|.+|..+| ++++|+.+|++|++++|++
T Consensus 86 LG~ay~~lg~l~P~~~~a~g~~~eA~~~~~kAl~l~P~~ 124 (158)
T 1zu2_A 86 IGNAYTSFAFLTPDETEAKHNFDLATQFFQQAVDEQPDN 124 (158)
T ss_dssp HHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHCTTC
T ss_pred HHHHHHHhcccCcchhhhhccHHHHHHHHHHHHHhCCCC
Confidence 999999886 5666666666666666654
No 190
>4e6h_A MRNA 3'-END-processing protein RNA14; HAT domain, heat repeat, CLP1, PCF11, structural protein; 2.30A {Kluyveromyces lactis} PDB: 4e85_A 4eba_A
Probab=99.10 E-value=9.3e-09 Score=115.71 Aligned_cols=186 Identities=9% Similarity=-0.015 Sum_probs=166.0
Q ss_pred HHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHH-HHHHHHHHHhccCCCchhchHHHHHHHHHHHHHHCCCHHHH
Q 006120 142 KEALVSFKRACELQPTDVRPHFRAGNCLYVLGRYREAK-EEYLLALEAAETGGNQWAYLLPQIYVNLGIALEGEGMVLSA 220 (660)
Q Consensus 142 ~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~-~~~~~al~~~p~~~~~~~~~~~~~~~~la~~~~~~g~~~~A 220 (660)
+.....|++++...|..+..|+..+..+...|+.++|. ..|++++...|. ...+++.++......|++++|
T Consensus 326 ~Rv~~~Ye~aL~~~p~~~~lW~~ya~~~~~~~~~~~a~r~il~rAi~~~P~--------s~~Lwl~~a~~ee~~~~~e~a 397 (679)
T 4e6h_A 326 ARMTYVYMQAAQHVCFAPEIWFNMANYQGEKNTDSTVITKYLKLGQQCIPN--------SAVLAFSLSEQYELNTKIPEI 397 (679)
T ss_dssp HHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHSCCTTHHHHHHHHHHHHCTT--------CHHHHHHHHHHHHHTTCHHHH
T ss_pred HHHHHHHHHHHHHcCCCHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHhCCC--------CHHHHHHHHHHHHHhCCHHHH
Confidence 45678899999999999999999999999999999997 999999999997 677889999999999999999
Q ss_pred HHHHHHHHHh-----------CCC-----------cHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh-CCCCHHHHHHHHH
Q 006120 221 CEYYRESAIL-----------CPT-----------HFRALKLLGSALFGVGEYRAAVKALEEAIFI-KPDYADAHCDLAS 277 (660)
Q Consensus 221 ~~~~~~al~~-----------~p~-----------~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~-~p~~~~~~~~la~ 277 (660)
...|++++.. .|. ...+|...+.+..+.|..+.|...|.+|++. .+....+|...|.
T Consensus 398 R~iyek~l~~l~~~~~~~~~~~p~~~~~~~~~~~~~~~vWi~y~~~erR~~~l~~AR~vf~~A~~~~~~~~~~lyi~~A~ 477 (679)
T 4e6h_A 398 ETTILSCIDRIHLDLAALMEDDPTNESAINQLKSKLTYVYCVYMNTMKRIQGLAASRKIFGKCRRLKKLVTPDIYLENAY 477 (679)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHTGGGSCTHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhhhhhhccCcchhhhhhhccchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCChHHHHHHHH
Confidence 9999999975 253 3457899999999999999999999999988 4455778888888
Q ss_pred HHHhCC-ChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHcccCC
Q 006120 278 ALHAMG-EDERAIEVFQKAIDLKPGHVDALYNLGGLYMDLGAGETEEAKKALKEALKMTNR 337 (660)
Q Consensus 278 ~~~~~g-~~~~A~~~~~~al~~~p~~~~a~~~La~~~~~~~~g~~~eA~~~~~~al~l~p~ 337 (660)
+....+ +++.|...|+++++..|+++..|...+...... |+.+.|...|++++...|.
T Consensus 478 lE~~~~~d~e~Ar~ife~~Lk~~p~~~~~w~~y~~fe~~~--~~~~~AR~lferal~~~~~ 536 (679)
T 4e6h_A 478 IEYHISKDTKTACKVLELGLKYFATDGEYINKYLDFLIYV--NEESQVKSLFESSIDKISD 536 (679)
T ss_dssp HHHTTTSCCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--TCHHHHHHHHHHHTTTSSS
T ss_pred HHHHhCCCHHHHHHHHHHHHHHCCCchHHHHHHHHHHHhC--CCHHHHHHHHHHHHHhcCC
Confidence 777765 499999999999999999999999999988888 9999999999999998874
No 191
>2kat_A Uncharacterized protein; NESG, structure, structural genomics, PSI-2, protein structure initiative; NMR {Bordetella parapertussis}
Probab=99.05 E-value=1.6e-09 Score=92.95 Aligned_cols=83 Identities=19% Similarity=0.196 Sum_probs=55.9
Q ss_pred HHHHHHHHHHHhCCCCHHHHHHHHHHHHhCCChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCCCHHHHHHHHHHHH
Q 006120 253 AAVKALEEAIFIKPDYADAHCDLASALHAMGEDERAIEVFQKAIDLKPGHVDALYNLGGLYMDLGAGETEEAKKALKEAL 332 (660)
Q Consensus 253 ~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~La~~~~~~~~g~~~eA~~~~~~al 332 (660)
+|+..|+++++.+|+++.++.++|.++...|++++|+..|+++++++|++..++..+|.++... |++++|+..|++++
T Consensus 3 ~a~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~--g~~~~A~~~~~~al 80 (115)
T 2kat_A 3 AITERLEAMLAQGTDNMLLRFTLGKTYAEHEQFDAALPHLRAALDFDPTYSVAWKWLGKTLQGQ--GDRAGARQAWESGL 80 (115)
T ss_dssp CHHHHHHHHHTTTCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHH--TCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhCCCcHHHHHHHHHHHHHccCHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHc--CCHHHHHHHHHHHH
Confidence 3566666666666666666666666666666666666666666666666666666666666666 66666666666666
Q ss_pred cccCC
Q 006120 333 KMTNR 337 (660)
Q Consensus 333 ~l~p~ 337 (660)
++.|.
T Consensus 81 ~~~~~ 85 (115)
T 2kat_A 81 AAAQS 85 (115)
T ss_dssp HHHHH
T ss_pred Hhccc
Confidence 66654
No 192
>2kat_A Uncharacterized protein; NESG, structure, structural genomics, PSI-2, protein structure initiative; NMR {Bordetella parapertussis}
Probab=99.04 E-value=1.8e-09 Score=92.58 Aligned_cols=98 Identities=16% Similarity=0.170 Sum_probs=87.8
Q ss_pred HHHHHHHHHHHhCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhCCChHHHHHHHHHHHHh
Q 006120 219 SACEYYRESAILCPTHFRALKLLGSALFGVGEYRAAVKALEEAIFIKPDYADAHCDLASALHAMGEDERAIEVFQKAIDL 298 (660)
Q Consensus 219 ~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~ 298 (660)
+|+..|+++++.+|+++.++..+|.++...|++++|+..|++++.++|++..+|.++|.++..+|++++|+..|++++++
T Consensus 3 ~a~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~ 82 (115)
T 2kat_A 3 AITERLEAMLAQGTDNMLLRFTLGKTYAEHEQFDAALPHLRAALDFDPTYSVAWKWLGKTLQGQGDRAGARQAWESGLAA 82 (115)
T ss_dssp CHHHHHHHHHTTTCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhCCCcHHHHHHHHHHHHHccCHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 58899999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCC--CHHHHHHHHHHHHHh
Q 006120 299 KPG--HVDALYNLGGLYMDL 316 (660)
Q Consensus 299 ~p~--~~~a~~~La~~~~~~ 316 (660)
.|. +......+...+..+
T Consensus 83 ~~~~~~~~~~~~l~~~l~~l 102 (115)
T 2kat_A 83 AQSRGDQQVVKELQVFLRRL 102 (115)
T ss_dssp HHHHTCHHHHHHHHHHHHHH
T ss_pred ccccccHHHHHHHHHHHHHh
Confidence 874 345555555555444
No 193
>2l6j_A TPR repeat-containing protein associated with HSP; tetratricopeptide repeat (TPR), HSP90 CO-factor, protein BIN; NMR {Saccharomyces cerevisiae}
Probab=99.03 E-value=2.3e-10 Score=96.94 Aligned_cols=88 Identities=26% Similarity=0.339 Sum_probs=52.0
Q ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhCCChHHHHHHHHHHHHhCCCC------HHHHHH
Q 006120 235 FRALKLLGSALFGVGEYRAAVKALEEAIFIKPDYADAHCDLASALHAMGEDERAIEVFQKAIDLKPGH------VDALYN 308 (660)
Q Consensus 235 ~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~------~~a~~~ 308 (660)
+.++..+|.++...|++++|+..|+++++++|+++.++.++|.++..+|++++|+..++++++++|++ ..++..
T Consensus 4 ~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~ 83 (111)
T 2l6j_A 4 FEKQKEQGNSLFKQGLYREAVHCYDQLITAQPQNPVGYSNKAMALIKLGEYTQAIQMCQQGLRYTSTAEHVAIRSKLQYR 83 (111)
T ss_dssp HHHHHHHHHHHHTTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTSCSSTTSHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCccHHHHHHHHHHH
Confidence 44555566666666666666666666666666666666666666666666666666666666666655 555555
Q ss_pred HHHHHHHhcCCCHHHH
Q 006120 309 LGGLYMDLGAGETEEA 324 (660)
Q Consensus 309 La~~~~~~~~g~~~eA 324 (660)
+|.++..+ |++++|
T Consensus 84 ~~~~~~~~--~~~~~a 97 (111)
T 2l6j_A 84 LELAQGAV--GSVQIP 97 (111)
T ss_dssp HHHHHHHH--HCCCCC
T ss_pred HHHHHHHH--HhHhhh
Confidence 66555555 444433
No 194
>1na3_A Designed protein CTPR2; de novo protein; HET: IPT; 1.55A {Unidentified} SCOP: k.38.1.1 PDB: 2avp_A
Probab=99.01 E-value=3.4e-09 Score=86.05 Aligned_cols=83 Identities=31% Similarity=0.493 Sum_probs=54.5
Q ss_pred cHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhCCChHHHHHHHHHHHHhCCCCHHHHHHHHHHH
Q 006120 234 HFRALKLLGSALFGVGEYRAAVKALEEAIFIKPDYADAHCDLASALHAMGEDERAIEVFQKAIDLKPGHVDALYNLGGLY 313 (660)
Q Consensus 234 ~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~La~~~ 313 (660)
.+.++..+|.++...|++++|+..+++++...|++..++.++|.++...|++++|+.+++++++++|+++.++..+|.++
T Consensus 8 ~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~l~~~~ 87 (91)
T 1na3_A 8 SAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAKQNLGNAK 87 (91)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCCCHHHHHHHHHHH
Confidence 35566666666666666666666666666666666666666666666666666666666666666666666666666666
Q ss_pred HHh
Q 006120 314 MDL 316 (660)
Q Consensus 314 ~~~ 316 (660)
..+
T Consensus 88 ~~~ 90 (91)
T 1na3_A 88 QKQ 90 (91)
T ss_dssp HHH
T ss_pred Hhc
Confidence 544
No 195
>2l6j_A TPR repeat-containing protein associated with HSP; tetratricopeptide repeat (TPR), HSP90 CO-factor, protein BIN; NMR {Saccharomyces cerevisiae}
Probab=99.01 E-value=3.4e-10 Score=95.91 Aligned_cols=95 Identities=17% Similarity=0.166 Sum_probs=89.1
Q ss_pred HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCC------HHHHH
Q 006120 200 LPQIYVNLGIALEGEGMVLSACEYYRESAILCPTHFRALKLLGSALFGVGEYRAAVKALEEAIFIKPDY------ADAHC 273 (660)
Q Consensus 200 ~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~------~~~~~ 273 (660)
.+..+..+|.++...|++++|+..|+++++++|+++.++.++|.++...|++++|+..++++++++|++ ..++.
T Consensus 3 ~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~ 82 (111)
T 2l6j_A 3 QFEKQKEQGNSLFKQGLYREAVHCYDQLITAQPQNPVGYSNKAMALIKLGEYTQAIQMCQQGLRYTSTAEHVAIRSKLQY 82 (111)
T ss_dssp HHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTSCSSTTSHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCccHHHHHHHHHH
Confidence 568899999999999999999999999999999999999999999999999999999999999999999 89999
Q ss_pred HHHHHHHhCCChHHHHHHHHH
Q 006120 274 DLASALHAMGEDERAIEVFQK 294 (660)
Q Consensus 274 ~la~~~~~~g~~~~A~~~~~~ 294 (660)
.+|.++..+|++++|+..+++
T Consensus 83 ~~~~~~~~~~~~~~a~~~~~~ 103 (111)
T 2l6j_A 83 RLELAQGAVGSVQIPVVEVDE 103 (111)
T ss_dssp HHHHHHHHHHCCCCCSSSSSS
T ss_pred HHHHHHHHHHhHhhhHhHHHH
Confidence 999999999988887765544
No 196
>3n71_A Histone lysine methyltransferase SMYD1; heart development, transcription; HET: SFG MES; 2.30A {Mus musculus}
Probab=98.97 E-value=3.8e-09 Score=114.41 Aligned_cols=133 Identities=14% Similarity=-0.017 Sum_probs=102.1
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHHHhccCCCchhchHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh-----CCCc---HH
Q 006120 165 AGNCLYVLGRYREAKEEYLLALEAAETGGNQWAYLLPQIYVNLGIALEGEGMVLSACEYYRESAIL-----CPTH---FR 236 (660)
Q Consensus 165 la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~-----~p~~---~~ 236 (660)
.+..+..+|+|++|+..+++++++....-...+...+.++.++|.+|..+|+|++|+.++++++++ .|++ +.
T Consensus 315 ~a~~~~~qg~~~eA~~l~~~aL~~~~~~lg~~Hp~~a~~~~nLa~~y~~~g~~~eA~~~~~~aL~i~~~~lG~~Hp~~a~ 394 (490)
T 3n71_A 315 KIDKARSEGLYHEVVKLCRECLEKQEPVFADTNLYVLRLLSIASEVLSYLQAYEEASHYARRMVDGYMKLYHHNNAQLGM 394 (490)
T ss_dssp HHHHHHTTTCHHHHHHHHHHHHHHHTTTBCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSCTTCHHHHH
T ss_pred HHHHHHhCCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHcCCCCHHHHH
Confidence 345577899999999999999998765544444447888999999999999999999999998875 3333 55
Q ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHh-----CCCC---HHHHHHHHHHHHhCCChHHHHHHHHHHHH
Q 006120 237 ALKLLGSALFGVGEYRAAVKALEEAIFI-----KPDY---ADAHCDLASALHAMGEDERAIEVFQKAID 297 (660)
Q Consensus 237 ~~~~lg~~~~~~g~~~~A~~~~~~al~~-----~p~~---~~~~~~la~~~~~~g~~~~A~~~~~~al~ 297 (660)
.+.+||.+|..+|++++|+.+|++|+++ .|++ .....+++.++.+++.+++|+..|+++.+
T Consensus 395 ~l~nLa~~~~~~G~~~eA~~~~~~Al~i~~~~lG~~Hp~~~~~~~~l~~~~~e~~~~~~ae~~~~~~~~ 463 (490)
T 3n71_A 395 AVMRAGLTNWHAGHIEVGHGMICKAYAILLVTHGPSHPITKDLEAMRMQTEMELRMFRQNEFMYHKMRE 463 (490)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCTTSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 7788888888888888888888888876 3444 44556777777777777777777777654
No 197
>1na3_A Designed protein CTPR2; de novo protein; HET: IPT; 1.55A {Unidentified} SCOP: k.38.1.1 PDB: 2avp_A
Probab=98.97 E-value=8e-09 Score=83.81 Aligned_cols=84 Identities=30% Similarity=0.443 Sum_probs=80.6
Q ss_pred HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHH
Q 006120 200 LPQIYVNLGIALEGEGMVLSACEYYRESAILCPTHFRALKLLGSALFGVGEYRAAVKALEEAIFIKPDYADAHCDLASAL 279 (660)
Q Consensus 200 ~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~ 279 (660)
.+.++..+|.++...|++++|+.++++++...|++..++..+|.++...|++++|+..++++++++|++..++.++|.++
T Consensus 8 ~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~l~~~~ 87 (91)
T 1na3_A 8 SAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAKQNLGNAK 87 (91)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCCCHHHHHHHHHHH
Confidence 67889999999999999999999999999999999999999999999999999999999999999999999999999998
Q ss_pred HhCC
Q 006120 280 HAMG 283 (660)
Q Consensus 280 ~~~g 283 (660)
..+|
T Consensus 88 ~~~g 91 (91)
T 1na3_A 88 QKQG 91 (91)
T ss_dssp HHHC
T ss_pred HhcC
Confidence 7654
No 198
>3ma5_A Tetratricopeptide repeat domain protein; NESG, structural genomics, PSI-2, protein structure initiative; 2.80A {Salinibacter ruber} PDB: 2kcl_A 2kcv_A
Probab=98.96 E-value=3.3e-09 Score=88.70 Aligned_cols=88 Identities=22% Similarity=0.383 Sum_probs=59.3
Q ss_pred CCCCHHHHHHHHHHHHhCCChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHcccCChhHHHHH
Q 006120 265 KPDYADAHCDLASALHAMGEDERAIEVFQKAIDLKPGHVDALYNLGGLYMDLGAGETEEAKKALKEALKMTNRVELHDAV 344 (660)
Q Consensus 265 ~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~La~~~~~~~~g~~~eA~~~~~~al~l~p~~~~~~~~ 344 (660)
+|+++.+++.+|.++..+|++++|+..|+++++++|+++.++..+|.+|..+ |++++|+..|++++++.|........
T Consensus 3 ~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~--g~~~~A~~~~~~al~l~~~~~~~~~~ 80 (100)
T 3ma5_A 3 DPEDPFTRYALAQEHLKHDNASRALALFEELVETDPDYVGTYYHLGKLYERL--DRTDDAIDTYAQGIEVAREEGTQKDL 80 (100)
T ss_dssp --CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCTHHHHHHHHHHHHT--TCHHHHHHHHHHHHHHHHHHSCHHHH
T ss_pred CccCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHc--CCHHHHHHHHHHHHhhhhcCCchhHH
Confidence 5667777777777777777777777777777777777777777777777776 77777777777777776654444445
Q ss_pred HHHHHHHHHh
Q 006120 345 SHLKQLQKKK 354 (660)
Q Consensus 345 ~~l~~l~~~~ 354 (660)
..+..+....
T Consensus 81 ~~l~~~l~~~ 90 (100)
T 3ma5_A 81 SELQDAKLKA 90 (100)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHc
Confidence 5555554443
No 199
>3n71_A Histone lysine methyltransferase SMYD1; heart development, transcription; HET: SFG MES; 2.30A {Mus musculus}
Probab=98.96 E-value=3.6e-09 Score=114.59 Aligned_cols=137 Identities=13% Similarity=0.022 Sum_probs=115.5
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHhC-----CCC---HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhccCCCchhchH
Q 006120 129 MAIGRVLYEHQLFKEALVSFKRACELQ-----PTD---VRPHFRAGNCLYVLGRYREAKEEYLLALEAAETGGNQWAYLL 200 (660)
Q Consensus 129 ~~lg~~~~~~g~~~~A~~~~~~al~~~-----p~~---~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~ 200 (660)
...+..+..+|+|++|+..+++++++. |++ ..++.++|.+|..+|+|++|+.++++++++....-...+...
T Consensus 313 le~a~~~~~qg~~~eA~~l~~~aL~~~~~~lg~~Hp~~a~~~~nLa~~y~~~g~~~eA~~~~~~aL~i~~~~lG~~Hp~~ 392 (490)
T 3n71_A 313 LEKIDKARSEGLYHEVVKLCRECLEKQEPVFADTNLYVLRLLSIASEVLSYLQAYEEASHYARRMVDGYMKLYHHNNAQL 392 (490)
T ss_dssp HHHHHHHHTTTCHHHHHHHHHHHHHHHTTTBCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSCTTCHHH
T ss_pred HHHHHHHHhCCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHcCCCCHHH
Confidence 345566778999999999999999862 444 567899999999999999999999999998655444444448
Q ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHh-----CCCc---HHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC
Q 006120 201 PQIYVNLGIALEGEGMVLSACEYYRESAIL-----CPTH---FRALKLLGSALFGVGEYRAAVKALEEAIFIK 265 (660)
Q Consensus 201 ~~~~~~la~~~~~~g~~~~A~~~~~~al~~-----~p~~---~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~ 265 (660)
+..+.+||.+|..+|++++|+.+|++|+++ .|++ .....+++.++..++.+++|...|.++.+..
T Consensus 393 a~~l~nLa~~~~~~G~~~eA~~~~~~Al~i~~~~lG~~Hp~~~~~~~~l~~~~~e~~~~~~ae~~~~~~~~~~ 465 (490)
T 3n71_A 393 GMAVMRAGLTNWHAGHIEVGHGMICKAYAILLVTHGPSHPITKDLEAMRMQTEMELRMFRQNEFMYHKMREAA 465 (490)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCTTSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 899999999999999999999999999975 4555 5567889999999999999999999987654
No 200
>1klx_A Cysteine rich protein B; structural genomics, helix-turn-helix, right handed super helix, modular structure', hydrolase; 1.95A {Helicobacter pylori} SCOP: a.118.18.1
Probab=98.84 E-value=5.6e-08 Score=86.49 Aligned_cols=88 Identities=18% Similarity=0.189 Sum_probs=47.0
Q ss_pred HHHHHHHCCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHH----CCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHh-
Q 006120 207 LGIALEGEGMVLSACEYYRESAILCPTHFRALKLLGSALFG----VGEYRAAVKALEEAIFIKPDYADAHCDLASALHA- 281 (660)
Q Consensus 207 la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~----~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~- 281 (660)
+|.+|...+..++|+.+|+++.+. .++.+++++|.+|.. .+++++|+.+|+++.+. .++.++++||.+|..
T Consensus 31 lg~~y~~g~~~~~A~~~~~~Aa~~--g~~~a~~~Lg~~y~~G~g~~~d~~~A~~~~~~Aa~~--g~~~a~~~Lg~~y~~G 106 (138)
T 1klx_A 31 LSLVSNSQINKQKLFQYLSKACEL--NSGNGCRFLGDFYENGKYVKKDLRKAAQYYSKACGL--NDQDGCLILGYKQYAG 106 (138)
T ss_dssp HHHHTCTTSCHHHHHHHHHHHHHT--TCHHHHHHHHHHHHHCSSSCCCHHHHHHHHHHHHHT--TCHHHHHHHHHHHHHT
T ss_pred HHHHHHcCCCHHHHHHHHHHHHcC--CCHHHHHHHHHHHHcCCCCCccHHHHHHHHHHHHcC--CCHHHHHHHHHHHHCC
Confidence 555555555555555555555543 445555555555555 45555555555555544 345555555555555
Q ss_pred ---CCChHHHHHHHHHHHHh
Q 006120 282 ---MGEDERAIEVFQKAIDL 298 (660)
Q Consensus 282 ---~g~~~~A~~~~~~al~~ 298 (660)
.+++++|+.+|+++.+.
T Consensus 107 ~g~~~d~~~A~~~~~~Aa~~ 126 (138)
T 1klx_A 107 KGVVKNEKQAVKTFEKACRL 126 (138)
T ss_dssp SSSCCCHHHHHHHHHHHHHT
T ss_pred CCCCcCHHHHHHHHHHHHHC
Confidence 55555555555555544
No 201
>3ma5_A Tetratricopeptide repeat domain protein; NESG, structural genomics, PSI-2, protein structure initiative; 2.80A {Salinibacter ruber} PDB: 2kcl_A 2kcv_A
Probab=98.84 E-value=1.6e-08 Score=84.44 Aligned_cols=87 Identities=16% Similarity=0.203 Sum_probs=70.7
Q ss_pred hCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhCCChHHHHHHHHHHHHhCCC--CHHHHH
Q 006120 230 LCPTHFRALKLLGSALFGVGEYRAAVKALEEAIFIKPDYADAHCDLASALHAMGEDERAIEVFQKAIDLKPG--HVDALY 307 (660)
Q Consensus 230 ~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~--~~~a~~ 307 (660)
.+|+++.+++.+|.++...|++++|+..|+++++++|+++.+|.++|.+|..+|++++|+..|++++++.|. +.....
T Consensus 2 ~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~~~~~~~~~~~ 81 (100)
T 3ma5_A 2 EDPEDPFTRYALAQEHLKHDNASRALALFEELVETDPDYVGTYYHLGKLYERLDRTDDAIDTYAQGIEVAREEGTQKDLS 81 (100)
T ss_dssp ---CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSCHHHHH
T ss_pred CCccCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhhhcCCchhHHH
Confidence 368889999999999999999999999999999999999999999999999999999999999999988653 344555
Q ss_pred HHHHHHHHh
Q 006120 308 NLGGLYMDL 316 (660)
Q Consensus 308 ~La~~~~~~ 316 (660)
.+..++...
T Consensus 82 ~l~~~l~~~ 90 (100)
T 3ma5_A 82 ELQDAKLKA 90 (100)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHc
Confidence 555555443
No 202
>1klx_A Cysteine rich protein B; structural genomics, helix-turn-helix, right handed super helix, modular structure', hydrolase; 1.95A {Helicobacter pylori} SCOP: a.118.18.1
Probab=98.81 E-value=7.7e-08 Score=85.55 Aligned_cols=119 Identities=22% Similarity=0.136 Sum_probs=73.0
Q ss_pred CHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhccCCCchhchHHHHHHHHHHHHHH----CC
Q 006120 140 LFKEALVSFKRACELQPTDVRPHFRAGNCLYVLGRYREAKEEYLLALEAAETGGNQWAYLLPQIYVNLGIALEG----EG 215 (660)
Q Consensus 140 ~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~la~~~~~----~g 215 (660)
++++|+.+|+++.+.....+. +|.+|...+..++|+.+|+++.+.. .+.+++++|.+|.. .+
T Consensus 10 d~~~A~~~~~~aa~~g~~~a~----lg~~y~~g~~~~~A~~~~~~Aa~~g----------~~~a~~~Lg~~y~~G~g~~~ 75 (138)
T 1klx_A 10 DLKKAIQYYVKACELNEMFGC----LSLVSNSQINKQKLFQYLSKACELN----------SGNGCRFLGDFYENGKYVKK 75 (138)
T ss_dssp HHHHHHHHHHHHHHTTCTTHH----HHHHTCTTSCHHHHHHHHHHHHHTT----------CHHHHHHHHHHHHHCSSSCC
T ss_pred CHHHHHHHHHHHHcCCCHhhh----HHHHHHcCCCHHHHHHHHHHHHcCC----------CHHHHHHHHHHHHcCCCCCc
Confidence 456666666666665533222 6666666666666666666666552 44666666666666 66
Q ss_pred CHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHH----CCCHHHHHHHHHHHHHhCCCCHHHHHHHH
Q 006120 216 MVLSACEYYRESAILCPTHFRALKLLGSALFG----VGEYRAAVKALEEAIFIKPDYADAHCDLA 276 (660)
Q Consensus 216 ~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~----~g~~~~A~~~~~~al~~~p~~~~~~~~la 276 (660)
++++|+.+|+++.+. .++.++++||.+|.. .+++++|+.+|+++.+. .++.+..+|+
T Consensus 76 d~~~A~~~~~~Aa~~--g~~~a~~~Lg~~y~~G~g~~~d~~~A~~~~~~Aa~~--g~~~A~~~l~ 136 (138)
T 1klx_A 76 DLRKAAQYYSKACGL--NDQDGCLILGYKQYAGKGVVKNEKQAVKTFEKACRL--GSEDACGILN 136 (138)
T ss_dssp CHHHHHHHHHHHHHT--TCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHT--TCHHHHHHC-
T ss_pred cHHHHHHHHHHHHcC--CCHHHHHHHHHHHHCCCCCCcCHHHHHHHHHHHHHC--CCHHHHHHHh
Confidence 666666666666654 456666667776666 66677777777766665 2344444433
No 203
>2kc7_A BFR218_protein; tetratricopeptide repeat, all-alpha, GFT-structural genomics, PSI-2, protein structure initiative; NMR {Bacteroides fragilis}
Probab=98.80 E-value=6.9e-09 Score=86.04 Aligned_cols=87 Identities=18% Similarity=0.192 Sum_probs=47.0
Q ss_pred HHHHHHHHCCCHHHHHHHHHHHHHhCCCcHH-HHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhCCC
Q 006120 206 NLGIALEGEGMVLSACEYYRESAILCPTHFR-ALKLLGSALFGVGEYRAAVKALEEAIFIKPDYADAHCDLASALHAMGE 284 (660)
Q Consensus 206 ~la~~~~~~g~~~~A~~~~~~al~~~p~~~~-~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~ 284 (660)
..|..+...|++++|+..++++++.+|++.. ++..+|.++...|++++|+..|+++++++|++..++.+ +.
T Consensus 5 ~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~--------~~ 76 (99)
T 2kc7_A 5 KTIKELINQGDIENALQALEEFLQTEPVGKDEAYYLMGNAYRKLGDWQKALNNYQSAIELNPDSPALQAR--------KM 76 (99)
T ss_dssp HHHHHHHHHTCHHHHHHHHHHHHHHCSSTHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTSTHHHHH--------HH
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCcHHHHHH--------HH
Confidence 4455555555555555555555555555555 55555555555555555555555555555555554432 33
Q ss_pred hHHHHHHHHHHHHhCC
Q 006120 285 DERAIEVFQKAIDLKP 300 (660)
Q Consensus 285 ~~~A~~~~~~al~~~p 300 (660)
+.+|+..|++++..+|
T Consensus 77 ~~~a~~~~~~~~~~~p 92 (99)
T 2kc7_A 77 VMDILNFYNKDMYNQL 92 (99)
T ss_dssp HHHHHHHHCCTTHHHH
T ss_pred HHHHHHHHHHHhccCc
Confidence 4444444444444443
No 204
>2kc7_A BFR218_protein; tetratricopeptide repeat, all-alpha, GFT-structural genomics, PSI-2, protein structure initiative; NMR {Bacteroides fragilis}
Probab=98.69 E-value=2.3e-08 Score=82.81 Aligned_cols=89 Identities=18% Similarity=0.288 Sum_probs=60.2
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHH-HHHHHHHHHHHcCCHHHHHHHHHHHHHHhccCCCchhchHHHHHHHH
Q 006120 129 MAIGRVLYEHQLFKEALVSFKRACELQPTDVR-PHFRAGNCLYVLGRYREAKEEYLLALEAAETGGNQWAYLLPQIYVNL 207 (660)
Q Consensus 129 ~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~-~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~l 207 (660)
+.+|..+...|++++|+..|+++++.+|+++. +++.+|.++...|++++|+..|+++++++|+. ..++..
T Consensus 4 ~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~--------~~~~~~- 74 (99)
T 2kc7_A 4 LKTIKELINQGDIENALQALEEFLQTEPVGKDEAYYLMGNAYRKLGDWQKALNNYQSAIELNPDS--------PALQAR- 74 (99)
T ss_dssp HHHHHHHHHHTCHHHHHHHHHHHHHHCSSTHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTS--------THHHHH-
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCc--------HHHHHH-
Confidence 45677777777777777777777777777777 77777777777777777777777777777763 233221
Q ss_pred HHHHHHCCCHHHHHHHHHHHHHhCCC
Q 006120 208 GIALEGEGMVLSACEYYRESAILCPT 233 (660)
Q Consensus 208 a~~~~~~g~~~~A~~~~~~al~~~p~ 233 (660)
+.+.+++..|++++..+|+
T Consensus 75 -------~~~~~a~~~~~~~~~~~p~ 93 (99)
T 2kc7_A 75 -------KMVMDILNFYNKDMYNQLE 93 (99)
T ss_dssp -------HHHHHHHHHHCCTTHHHHC
T ss_pred -------HHHHHHHHHHHHHhccCcc
Confidence 4455666666666555544
No 205
>3ly7_A Transcriptional activator CADC; alpha/beta domain, alpha domain, DNA-binding, transcription regulation, transmembrane; 1.80A {Escherichia coli} PDB: 3lya_A 3ly8_A 3ly9_A
Probab=98.69 E-value=3.6e-07 Score=93.47 Aligned_cols=138 Identities=14% Similarity=0.007 Sum_probs=107.1
Q ss_pred HHHHHHHHHHHHCC---CHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHC---C-CHHHHHH----HHHH--HHHhCCCC
Q 006120 202 QIYVNLGIALEGEG---MVLSACEYYRESAILCPTHFRALKLLGSALFGV---G-EYRAAVK----ALEE--AIFIKPDY 268 (660)
Q Consensus 202 ~~~~~la~~~~~~g---~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~---g-~~~~A~~----~~~~--al~~~p~~ 268 (660)
.-++..|..+...+ ...+|+.+|+++++++|+++.++..++.++... + ....... .++. ++...|.+
T Consensus 197 ydl~Lra~~~l~~~~~~~~~~A~~l~e~Al~lDP~~a~A~A~la~a~~~~~~~~~~~~~~~~~l~~a~~a~~a~~~~~~~ 276 (372)
T 3ly7_A 197 LTNFYQAHDYLLHGDDKSLNRASELLGEIVQSSPEFTYARAEKALVDIVRHSQHPLDEKQLAALNTEIDNIVTLPELNNL 276 (372)
T ss_dssp HHHHHHHHHHHHHCSHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHTCGGGTTC
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHhccCCCchhhHHHHHHHHHHHHhcccCCcC
Confidence 33444455555444 358899999999999999999999888877531 1 1111111 2221 23556899
Q ss_pred HHHHHHHHHHHHhCCChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHcccCChhHHH
Q 006120 269 ADAHCDLASALHAMGEDERAIEVFQKAIDLKPGHVDALYNLGGLYMDLGAGETEEAKKALKEALKMTNRVELHD 342 (660)
Q Consensus 269 ~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~La~~~~~~~~g~~~eA~~~~~~al~l~p~~~~~~ 342 (660)
+.++..++..+...|++++|+..+++|+.++|+ ..++..+|.++... |++++|++.|++|+.++|......
T Consensus 277 a~~~~alal~~l~~gd~d~A~~~l~rAl~Ln~s-~~a~~llG~~~~~~--G~~~eA~e~~~~AlrL~P~~~t~~ 347 (372)
T 3ly7_A 277 SIIYQIKAVSALVKGKTDESYQAINTGIDLEMS-WLNYVLLGKVYEMK--GMNREAADAYLTAFNLRPGANTLY 347 (372)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCCC-HHHHHHHHHHHHHT--TCHHHHHHHHHHHHHHSCSHHHHH
T ss_pred HHHHHHHHHHHHhCCCHHHHHHHHHHHHhcCCC-HHHHHHHHHHHHHC--CCHHHHHHHHHHHHhcCCCcChHH
Confidence 999999999999899999999999999999975 77889999999998 999999999999999999875433
No 206
>3u64_A Protein TP_0956; tetratrico peptide repeat, protein-prote interaction, syphilis, lipoprotein, transport protein; 2.30A {Treponema pallidum subsp} PDB: 4di3_A 4di4_A*
Probab=98.69 E-value=6.8e-07 Score=87.72 Aligned_cols=108 Identities=19% Similarity=0.129 Sum_probs=93.1
Q ss_pred HhCCCcHHHHHHHHHHHHH---C--C------CHHHHHHHHHHHHHhCCC--CHHHHHHHHHHHHhC-----CChHHHHH
Q 006120 229 ILCPTHFRALKLLGSALFG---V--G------EYRAAVKALEEAIFIKPD--YADAHCDLASALHAM-----GEDERAIE 290 (660)
Q Consensus 229 ~~~p~~~~~~~~lg~~~~~---~--g------~~~~A~~~~~~al~~~p~--~~~~~~~la~~~~~~-----g~~~~A~~ 290 (660)
+.+|+++++++..|.+... . | ....|...++++++++|+ +..+|..+|.+|... |+.++|..
T Consensus 146 ~~~~~dve~L~W~ai~~ss~a~~~~gg~~Al~~l~~A~a~lerAleLDP~~~~GsA~~~LG~lY~~vPp~~gGd~ekA~~ 225 (301)
T 3u64_A 146 RCTRVDVGTLYWVGTGYVAAFALTPLGSALPDTVHAAVMMLERACDLWPSYQEGAVWNVLTKFYAAAPESFGGGMEKAHT 225 (301)
T ss_dssp TCCGGGHHHHHHHHHHHHHHHTTSCTTSCCHHHHHHHHHHHHHHHHHCTTHHHHHHHHHHHHHHHHSCTTTTCCHHHHHH
T ss_pred HcCccccHHHHHHHHHHHHHHhcCCCChHHHHhHHHHHHHHHHHHHhCCCcccCHHHHHHHHHHHhCCCccCCCHHHHHH
Confidence 3578888888887776643 2 3 347899999999999999 677999999999995 99999999
Q ss_pred HHHHHHHhCCCC-HHHHHHHHHHHHHhcCCCHHHHHHHHHHHHcccCC
Q 006120 291 VFQKAIDLKPGH-VDALYNLGGLYMDLGAGETEEAKKALKEALKMTNR 337 (660)
Q Consensus 291 ~~~~al~~~p~~-~~a~~~La~~~~~~~~g~~~eA~~~~~~al~l~p~ 337 (660)
+|++|++++|+. ...++..|..+.... |++++|.+++++++...|.
T Consensus 226 ~ferAL~LnP~~~id~~v~YA~~l~~~~-gd~~~a~~~L~kAL~a~p~ 272 (301)
T 3u64_A 226 AFEHLTRYCSAHDPDHHITYADALCIPL-NNRAGFDEALDRALAIDPE 272 (301)
T ss_dssp HHHHHHHHCCTTCSHHHHHHHHHTTTTT-TCHHHHHHHHHHHHHCCGG
T ss_pred HHHHHHHhCCCCCchHHHHHHHHHHHhc-CCHHHHHHHHHHHHcCCCC
Confidence 999999999975 999999999997631 8999999999999999877
No 207
>3ly7_A Transcriptional activator CADC; alpha/beta domain, alpha domain, DNA-binding, transcription regulation, transmembrane; 1.80A {Escherichia coli} PDB: 3lya_A 3ly8_A 3ly9_A
Probab=98.61 E-value=6.9e-07 Score=91.41 Aligned_cols=154 Identities=10% Similarity=0.022 Sum_probs=105.2
Q ss_pred hhccCcHHHHHHHHHHHHHHHHcC---CHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhccC
Q 006120 116 DGARSREEAFDGHMAIGRVLYEHQ---LFKEALVSFKRACELQPTDVRPHFRAGNCLYVLGRYREAKEEYLLALEAAETG 192 (660)
Q Consensus 116 ~~~~~~~~~~~~~~~lg~~~~~~g---~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~ 192 (660)
...+.++..++ ++..|..++..+ ++.+|+.+|+++++++|+.+.++..++.++... ....+..
T Consensus 188 ~~~p~~~~Ayd-l~Lra~~~l~~~~~~~~~~A~~l~e~Al~lDP~~a~A~A~la~a~~~~-------------~~~~~~~ 253 (372)
T 3ly7_A 188 KILPHRGALLT-NFYQAHDYLLHGDDKSLNRASELLGEIVQSSPEFTYARAEKALVDIVR-------------HSQHPLD 253 (372)
T ss_dssp HHSCSSGGGHH-HHHHHHHHHHHCSHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHH-------------HHHSCCC
T ss_pred ccCCCCHHHHH-HHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHH-------------hccCCCc
Confidence 33445544443 455667776654 458999999999999999999999998888711 0001110
Q ss_pred CCchhchHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHH
Q 006120 193 GNQWAYLLPQIYVNLGIALEGEGMVLSACEYYRESAILCPTHFRALKLLGSALFGVGEYRAAVKALEEAIFIKPDYADAH 272 (660)
Q Consensus 193 ~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~ 272 (660)
.... . ....|... ..++..+|.++.++..++..+...|++++|+..+++|+.++|+ ..+|
T Consensus 254 -------~~~~-~----------~l~~a~~a-~~a~~~~~~~a~~~~alal~~l~~gd~d~A~~~l~rAl~Ln~s-~~a~ 313 (372)
T 3ly7_A 254 -------EKQL-A----------ALNTEIDN-IVTLPELNNLSIIYQIKAVSALVKGKTDESYQAINTGIDLEMS-WLNY 313 (372)
T ss_dssp -------HHHH-H----------HHHHHHHH-HHTCGGGTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCCC-HHHH
T ss_pred -------hhhH-H----------HHHHHHHH-HHhcccCCcCHHHHHHHHHHHHhCCCHHHHHHHHHHHHhcCCC-HHHH
Confidence 0000 0 01222221 1234567888888888888887778888888888888888864 6777
Q ss_pred HHHHHHHHhCCChHHHHHHHHHHHHhCCCCH
Q 006120 273 CDLASALHAMGEDERAIEVFQKAIDLKPGHV 303 (660)
Q Consensus 273 ~~la~~~~~~g~~~~A~~~~~~al~~~p~~~ 303 (660)
..+|.++...|++++|++.|++|+.++|...
T Consensus 314 ~llG~~~~~~G~~~eA~e~~~~AlrL~P~~~ 344 (372)
T 3ly7_A 314 VLLGKVYEMKGMNREAADAYLTAFNLRPGAN 344 (372)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHSCSHH
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHhcCCCcC
Confidence 8888888888888888888888888888764
No 208
>2uy1_A Cleavage stimulation factor 77; RNA-binding protein; 2.0A {Encephalitozoon cuniculi} PDB: 2uy1_B
Probab=98.59 E-value=1.4e-05 Score=86.91 Aligned_cols=175 Identities=10% Similarity=-0.036 Sum_probs=122.9
Q ss_pred HHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhccCCCchhchHHHHHHHHHHHHHHCCCHHHH
Q 006120 141 FKEALVSFKRACELQPTDVRPHFRAGNCLYVLGRYREAKEEYLLALEAAETGGNQWAYLLPQIYVNLGIALEGEGMVLSA 220 (660)
Q Consensus 141 ~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~la~~~~~~g~~~~A 220 (660)
.+.....|++++...|..+..|...+..+...|+.++|...|++++.. |... ..+...+... ..+ +.
T Consensus 195 ~~Rv~~~ye~al~~~p~~~~lW~~ya~~~~~~~~~~~ar~i~erAi~~-P~~~--------~l~~~y~~~~-e~~---~~ 261 (493)
T 2uy1_A 195 ESRMHFIHNYILDSFYYAEEVYFFYSEYLIGIGQKEKAKKVVERGIEM-SDGM--------FLSLYYGLVM-DEE---AV 261 (493)
T ss_dssp HHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-CCSS--------HHHHHHHHHT-TCT---HH
T ss_pred HHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhC-CCcH--------HHHHHHHhhc-chh---HH
Confidence 345678999999999999999999999999999999999999999999 8743 2232222221 111 11
Q ss_pred HHHHHHHHH----------hCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhCC-ChHHHH
Q 006120 221 CEYYRESAI----------LCPTHFRALKLLGSALFGVGEYRAAVKALEEAIFIKPDYADAHCDLASALHAMG-EDERAI 289 (660)
Q Consensus 221 ~~~~~~al~----------~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g-~~~~A~ 289 (660)
...+.+... ..+....+|...+....+.+..+.|...|.+| ...+.....|...|.+....+ +.+.|.
T Consensus 262 ~~~l~~~~~~~~~~~~~~~~~~~~~~lw~~y~~~~~r~~~~~~AR~i~~~A-~~~~~~~~v~i~~A~lE~~~~~d~~~ar 340 (493)
T 2uy1_A 262 YGDLKRKYSMGEAESAEKVFSKELDLLRINHLNYVLKKRGLELFRKLFIEL-GNEGVGPHVFIYCAFIEYYATGSRATPY 340 (493)
T ss_dssp HHHHHHHTC----------CHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHH-TTSCCCHHHHHHHHHHHHHHHCCSHHHH
T ss_pred HHHHHHHHHhhccchhhhhcccccHHHHHHHHHHHHHcCCHHHHHHHHHHh-hCCCCChHHHHHHHHHHHHHCCChHHHH
Confidence 111111110 00112356777777777778888888888888 433335566766676666555 588888
Q ss_pred HHHHHHHHhCCCCHHHHHHHHHHHHHhcCCCHHHHHHHHHHH
Q 006120 290 EVFQKAIDLKPGHVDALYNLGGLYMDLGAGETEEAKKALKEA 331 (660)
Q Consensus 290 ~~~~~al~~~p~~~~a~~~La~~~~~~~~g~~~eA~~~~~~a 331 (660)
..|+.+++..|+.+..+...+...... |+.+.|...|+++
T Consensus 341 ~ife~al~~~~~~~~~~~~yid~e~~~--~~~~~aR~l~er~ 380 (493)
T 2uy1_A 341 NIFSSGLLKHPDSTLLKEEFFLFLLRI--GDEENARALFKRL 380 (493)
T ss_dssp HHHHHHHHHCTTCHHHHHHHHHHHHHH--TCHHHHHHHHHHS
T ss_pred HHHHHHHHHCCCCHHHHHHHHHHHHHc--CCHHHHHHHHHHH
Confidence 889888888888888777777777777 8888888888876
No 209
>2uy1_A Cleavage stimulation factor 77; RNA-binding protein; 2.0A {Encephalitozoon cuniculi} PDB: 2uy1_B
Probab=98.55 E-value=1.5e-05 Score=86.76 Aligned_cols=147 Identities=9% Similarity=-0.054 Sum_probs=99.7
Q ss_pred HHHHHHHHHHHHHhccCCCchhchHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHCCCHHHHH
Q 006120 176 REAKEEYLLALEAAETGGNQWAYLLPQIYVNLGIALEGEGMVLSACEYYRESAILCPTHFRALKLLGSALFGVGEYRAAV 255 (660)
Q Consensus 176 ~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~ 255 (660)
......|++++...|. .+.+|+..+..+...|+.++|...|++++.. |.+...+...+... +.+ +..
T Consensus 196 ~Rv~~~ye~al~~~p~--------~~~lW~~ya~~~~~~~~~~~ar~i~erAi~~-P~~~~l~~~y~~~~-e~~---~~~ 262 (493)
T 2uy1_A 196 SRMHFIHNYILDSFYY--------AEEVYFFYSEYLIGIGQKEKAKKVVERGIEM-SDGMFLSLYYGLVM-DEE---AVY 262 (493)
T ss_dssp HHHHHHHHHHHHHTTT--------CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-CCSSHHHHHHHHHT-TCT---HHH
T ss_pred HHHHHHHHHHHHcCCC--------CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhC-CCcHHHHHHHHhhc-chh---HHH
Confidence 3456778888887776 5677888888888888888888888888888 87766665544431 111 111
Q ss_pred HHHHHHHHh----------CCCCHHHHHHHHHHHHhCCChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCCCHHHHH
Q 006120 256 KALEEAIFI----------KPDYADAHCDLASALHAMGEDERAIEVFQKAIDLKPGHVDALYNLGGLYMDLGAGETEEAK 325 (660)
Q Consensus 256 ~~~~~al~~----------~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~La~~~~~~~~g~~~eA~ 325 (660)
..+..+... .+....+|...+....+.++.+.|...|++| ...+.....|...+.+-...+ ++.+.|.
T Consensus 263 ~~l~~~~~~~~~~~~~~~~~~~~~~lw~~y~~~~~r~~~~~~AR~i~~~A-~~~~~~~~v~i~~A~lE~~~~-~d~~~ar 340 (493)
T 2uy1_A 263 GDLKRKYSMGEAESAEKVFSKELDLLRINHLNYVLKKRGLELFRKLFIEL-GNEGVGPHVFIYCAFIEYYAT-GSRATPY 340 (493)
T ss_dssp HHHHHHTC----------CHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHH-TTSCCCHHHHHHHHHHHHHHH-CCSHHHH
T ss_pred HHHHHHHHhhccchhhhhcccccHHHHHHHHHHHHHcCCHHHHHHHHHHh-hCCCCChHHHHHHHHHHHHHC-CChHHHH
Confidence 111111100 0112356777888887888999999999999 433335667777777766662 4799999
Q ss_pred HHHHHHHcccCC
Q 006120 326 KALKEALKMTNR 337 (660)
Q Consensus 326 ~~~~~al~l~p~ 337 (660)
..|+++++..|+
T Consensus 341 ~ife~al~~~~~ 352 (493)
T 2uy1_A 341 NIFSSGLLKHPD 352 (493)
T ss_dssp HHHHHHHHHCTT
T ss_pred HHHHHHHHHCCC
Confidence 999999998776
No 210
>3q3e_A HMW1C-like glycosyltransferase; N-glycosylation; 2.10A {Actinobacillus pleuropneumoniae serovaorganism_taxid} PDB: 3q3h_A* 3q3i_A
Probab=98.48 E-value=4e-09 Score=114.70 Aligned_cols=112 Identities=7% Similarity=-0.034 Sum_probs=74.8
Q ss_pred hccCCCcchHHHHHHHHHHhhhhccCCCcccccchhhhhhhcccCCCCHHHHHHhhhhhhcccccCCC-------C-ccc
Q 006120 447 LHFLKPETFQGAVKAINERILSVLDETGSARVDLGMFYAILAPICSGSPEKRKRVAFDALLWRPVNEG-------S-TQV 518 (660)
Q Consensus 447 iGY~S~df~~H~v~~l~~~~l~~hDr~g~~~fev~~y~~~~~~~~~~~~~~r~r~~~d~~~~~~~~~~-------~-a~~ 518 (660)
|||+|++|++|+|++++.+++++ ||+ +|||++| + ++. .|.++ |..+| +|+++.+. . +++
T Consensus 278 ig~ls~f~~~HsV~r~~~~~l~~-dR~---~FEV~~Y--s-~~~-~D~~t---r~~~d--~f~~l~~~s~~~~~~~ia~~ 344 (631)
T 3q3e_A 278 VVLLEHFHSAHSIYRTHSTSMIA-ARE---HFYLIGL--G-SPS-VDQAG---QEVFD--EFHLVAGDNMKQKLEFIRSV 344 (631)
T ss_dssp EEECSSCCTTSHHHHHHHHHHHH-HTT---TSEEEEE--E-CTT-SCHHH---HTTSS--EEEECCCSSHHHHHHHHHHH
T ss_pred EEEeCcccCCCcHHHHHHHHHHh-hhh---cEEEEEE--e-CCC-CCHHH---HhcCc--EEEECCCCCccccHHHHHHH
Confidence 99999999999999999999997 998 9999999 6 543 45555 56789 55555554 1 799
Q ss_pred hhccHHHHHHHhHHHhccCCCchhhhhhhc-cCCCcccchhHHhhhccCCCCcchhhhh
Q 006120 519 RKVDAVRYIKLLRAVYIPSHGVSEMMEVHG-EADSSMVSLSEFLVMFDDPDWGFGIMST 576 (660)
Q Consensus 519 i~~D~~~~l~dL~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 576 (660)
|++|.+|||+||.. .+.+.. +.+-. -..+++|+|-+|.-.--=|.-.|.|...
T Consensus 345 Ir~d~IDILVdL~g---~t~~~~--i~~aa~RpAPVQvs~lGyp~TTGl~~iDY~i~D~ 398 (631)
T 3q3e_A 345 CESNGAAIFYMPSI---GMDMTT--IFASNTRLAPIQAIALGHPATTHSDFIEYVIVED 398 (631)
T ss_dssp HHHHTCSEEEESCC---SSSHHH--HHHTTSCCSSEEEEECSSCSCCCCTTCCEEEEEG
T ss_pred HHhcCCCEEEECCC---CCCchh--HHHHhCCCchheEeccCCCcccCcccCCEEEeCC
Confidence 99999999999863 222211 12211 2455556665554433333444444433
No 211
>3qwp_A SET and MYND domain-containing protein 3; SMYD3,SET and MYND domain, zinc finger MYND domain-containin 1, structural genomics; HET: SAM; 1.53A {Homo sapiens} PDB: 3mek_A* 3oxg_A* 3oxf_A* 3pdn_A* 3oxl_A* 3ru0_A*
Probab=98.43 E-value=9.1e-07 Score=94.32 Aligned_cols=116 Identities=13% Similarity=-0.031 Sum_probs=89.4
Q ss_pred HHHHHHcCCHHHHHHHHHHHHHHhccCCCchhchHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh-----CCCc---HHH
Q 006120 166 GNCLYVLGRYREAKEEYLLALEAAETGGNQWAYLLPQIYVNLGIALEGEGMVLSACEYYRESAIL-----CPTH---FRA 237 (660)
Q Consensus 166 a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~-----~p~~---~~~ 237 (660)
..-+..+|++++|+..+++++++....-...+.....++.++|.+|..+|+|++|+.++++++.+ .|++ +..
T Consensus 294 ie~~~~~g~~~~a~~~~~~~L~~~~~~lg~~h~~~~~~~~~L~~~y~~~g~~~eA~~~~~~~L~i~~~~lg~~Hp~~a~~ 373 (429)
T 3qwp_A 294 IEELKAHWKWEQVLAMCQAIISSNSERLPDINIYQLKVLDCAMDACINLGLLEEALFYGTRTMEPYRIFFPGSHPVRGVQ 373 (429)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHTCSSCCCCTTSHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHSCSSCHHHHHH
T ss_pred HHHHHhhccHHHHHHHHHHHHHhccCcCCccchHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHhHHHHcCCCChHHHHH
Confidence 34456789999999999999987655444444447889999999999999999999999999875 3343 557
Q ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHh-----CCCCH---HHHHHHHHHHHh
Q 006120 238 LKLLGSALFGVGEYRAAVKALEEAIFI-----KPDYA---DAHCDLASALHA 281 (660)
Q Consensus 238 ~~~lg~~~~~~g~~~~A~~~~~~al~~-----~p~~~---~~~~~la~~~~~ 281 (660)
+++||.+|..+|++++|+.+|++|+++ .|+++ .++.+|+.+...
T Consensus 374 l~nLa~~~~~~g~~~eA~~~~~~Al~i~~~~lG~~Hp~~~~~~~~l~~~~~e 425 (429)
T 3qwp_A 374 VMKVGKLQLHQGMFPQAMKNLRLAFDIMRVTHGREHSLIEDLILLLEECDAN 425 (429)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCTTSHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHH
Confidence 888999999999999999999999886 35554 344556665543
No 212
>3qww_A SET and MYND domain-containing protein 2; methyltransferase, HSP90, transferase-transferase inhibitor; HET: SFG; 1.80A {Mus musculus} PDB: 3qwv_A* 3s7d_A* 3s7b_A* 3s7f_A* 3s7j_A* 3tg4_A* 3tg5_A* 3rib_A*
Probab=98.43 E-value=1.7e-06 Score=92.17 Aligned_cols=101 Identities=17% Similarity=-0.054 Sum_probs=81.1
Q ss_pred HcCCHHHHHHHHHHHHHHhccCCCchhchHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh-----CCC---cHHHHHHHH
Q 006120 171 VLGRYREAKEEYLLALEAAETGGNQWAYLLPQIYVNLGIALEGEGMVLSACEYYRESAIL-----CPT---HFRALKLLG 242 (660)
Q Consensus 171 ~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~-----~p~---~~~~~~~lg 242 (660)
..|+|++|+..+++++++....-...+...+.++.++|.+|..+|+|++|+.++++++++ .|+ .+..+++||
T Consensus 310 ~~g~~~eA~~~~~~~L~i~~~~lg~~Hp~~a~~~~nLa~~y~~~g~~~eA~~~~~~aL~i~~~~lG~~Hp~~a~~l~nLa 389 (433)
T 3qww_A 310 HYKSPSELLEICELSQEKMSSVFEDSNVYMLHMMYQAMGVCLYMQDWEGALKYGQKIIKPYSKHYPVYSLNVASMWLKLG 389 (433)
T ss_dssp TTSCHHHHHHHHHHHHHHHTTTBCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSCSSCHHHHHHHHHHH
T ss_pred hccCHHHHHHHHHHHHHHhhCccChhchHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHH
Confidence 468999999999999998665444444447889999999999999999999999999875 333 455788899
Q ss_pred HHHHHCCCHHHHHHHHHHHHHh-----CCCCHHH
Q 006120 243 SALFGVGEYRAAVKALEEAIFI-----KPDYADA 271 (660)
Q Consensus 243 ~~~~~~g~~~~A~~~~~~al~~-----~p~~~~~ 271 (660)
.+|..+|++++|+.+|++|+++ .|+++.+
T Consensus 390 ~~~~~qg~~~eA~~~~~~Al~i~~~~lG~~Hp~~ 423 (433)
T 3qww_A 390 RLYMGLENKAAGEKALKKAIAIMEVAHGKDHPYI 423 (433)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHHHHHTCTTCHHH
T ss_pred HHHHhccCHHHHHHHHHHHHHHHHHHcCCCChHH
Confidence 9999999999999999998886 3555543
No 213
>3qww_A SET and MYND domain-containing protein 2; methyltransferase, HSP90, transferase-transferase inhibitor; HET: SFG; 1.80A {Mus musculus} PDB: 3qwv_A* 3s7d_A* 3s7b_A* 3s7f_A* 3s7j_A* 3tg4_A* 3tg5_A* 3rib_A*
Probab=98.41 E-value=2.3e-06 Score=91.09 Aligned_cols=106 Identities=9% Similarity=0.023 Sum_probs=87.2
Q ss_pred HHHHHcCCHHHHHHHHHHHHHh-----CCCC---HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhccCCCchhchHHHHH
Q 006120 133 RVLYEHQLFKEALVSFKRACEL-----QPTD---VRPHFRAGNCLYVLGRYREAKEEYLLALEAAETGGNQWAYLLPQIY 204 (660)
Q Consensus 133 ~~~~~~g~~~~A~~~~~~al~~-----~p~~---~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~ 204 (660)
......|+|++|+..|++++++ .|++ ..++.++|.+|..+|+|++|+.++++++++....-...+...+..+
T Consensus 306 ~~~~~~g~~~eA~~~~~~~L~i~~~~lg~~Hp~~a~~~~nLa~~y~~~g~~~eA~~~~~~aL~i~~~~lG~~Hp~~a~~l 385 (433)
T 3qww_A 306 RRAKHYKSPSELLEICELSQEKMSSVFEDSNVYMLHMMYQAMGVCLYMQDWEGALKYGQKIIKPYSKHYPVYSLNVASMW 385 (433)
T ss_dssp HHHTTTSCHHHHHHHHHHHHHHHTTTBCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSCSSCHHHHHHH
T ss_pred HHhhhccCHHHHHHHHHHHHHHhhCccChhchHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHHHcCCCChHHHHHH
Confidence 3334568999999999999986 3555 4678899999999999999999999999986554443334488999
Q ss_pred HHHHHHHHHCCCHHHHHHHHHHHHHh-----CCCcHHHH
Q 006120 205 VNLGIALEGEGMVLSACEYYRESAIL-----CPTHFRAL 238 (660)
Q Consensus 205 ~~la~~~~~~g~~~~A~~~~~~al~~-----~p~~~~~~ 238 (660)
.+||.+|..+|++++|+.+|++|+++ .|+++.+.
T Consensus 386 ~nLa~~~~~qg~~~eA~~~~~~Al~i~~~~lG~~Hp~~~ 424 (433)
T 3qww_A 386 LKLGRLYMGLENKAAGEKALKKAIAIMEVAHGKDHPYIS 424 (433)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCTTCHHHH
T ss_pred HHHHHHHHhccCHHHHHHHHHHHHHHHHHHcCCCChHHH
Confidence 99999999999999999999999875 56666543
No 214
>3bee_A Putative YFRE protein; putaive YFRE protein, structural GE PSI-2, protein structure initiative; 2.15A {Vibrio parahaemolyticus rimd 2210633}
Probab=98.39 E-value=1.6e-06 Score=70.98 Aligned_cols=71 Identities=15% Similarity=0.067 Sum_probs=43.9
Q ss_pred CCCCHHHHHHHHHHHHhCCC---hHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHcccCC
Q 006120 265 KPDYADAHCDLASALHAMGE---DERAIEVFQKAIDLKPGHVDALYNLGGLYMDLGAGETEEAKKALKEALKMTNR 337 (660)
Q Consensus 265 ~p~~~~~~~~la~~~~~~g~---~~~A~~~~~~al~~~p~~~~a~~~La~~~~~~~~g~~~eA~~~~~~al~l~p~ 337 (660)
+|+++..+..+|.++...++ .++|...++++++++|+++.++..+|..+... |++++|+.+++++++.+|.
T Consensus 2 ~p~~~~~~~~~a~al~~~~~~~~~~~A~~~l~~AL~~dp~~~rA~~~lg~~~~~~--g~y~~Ai~~w~~~l~~~p~ 75 (93)
T 3bee_A 2 NAVTATQLAAKATTLYYLHKQAMTDEVSLLLEQALQLEPYNEAALSLIANDHFIS--FRFQEAIDTWVLLLDSNDP 75 (93)
T ss_dssp CCCCHHHHHHHHHHHHHTTTTCCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHT--TCHHHHHHHHHHHHTCCCT
T ss_pred CCCCHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHCcCCHHHHHHHHHHHHHc--CCHHHHHHHHHHHHhhCCC
Confidence 35566666666666654444 46666666666666666666666666666665 6666666666666666655
No 215
>3qwp_A SET and MYND domain-containing protein 3; SMYD3,SET and MYND domain, zinc finger MYND domain-containin 1, structural genomics; HET: SAM; 1.53A {Homo sapiens} PDB: 3mek_A* 3oxg_A* 3oxf_A* 3pdn_A* 3oxl_A* 3ru0_A*
Probab=98.39 E-value=1.4e-06 Score=92.86 Aligned_cols=118 Identities=14% Similarity=-0.038 Sum_probs=94.5
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHhC-----CCC---HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhccCCCchhchH
Q 006120 129 MAIGRVLYEHQLFKEALVSFKRACELQ-----PTD---VRPHFRAGNCLYVLGRYREAKEEYLLALEAAETGGNQWAYLL 200 (660)
Q Consensus 129 ~~lg~~~~~~g~~~~A~~~~~~al~~~-----p~~---~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~ 200 (660)
......+..+|++++|+..+++++++. |++ ..++.++|.+|..+|+|++|+.++++++++....-...+...
T Consensus 291 l~~ie~~~~~g~~~~a~~~~~~~L~~~~~~lg~~h~~~~~~~~~L~~~y~~~g~~~eA~~~~~~~L~i~~~~lg~~Hp~~ 370 (429)
T 3qwp_A 291 LKKIEELKAHWKWEQVLAMCQAIISSNSERLPDINIYQLKVLDCAMDACINLGLLEEALFYGTRTMEPYRIFFPGSHPVR 370 (429)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHTCSSCCCCTTSHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHSCSSCHHH
T ss_pred HHHHHHHHhhccHHHHHHHHHHHHHhccCcCCccchHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHhHHHHcCCCChHH
Confidence 344455678899999999999999863 444 467899999999999999999999999988655444333448
Q ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHh-----CCCcHH---HHHHHHHHHH
Q 006120 201 PQIYVNLGIALEGEGMVLSACEYYRESAIL-----CPTHFR---ALKLLGSALF 246 (660)
Q Consensus 201 ~~~~~~la~~~~~~g~~~~A~~~~~~al~~-----~p~~~~---~~~~lg~~~~ 246 (660)
+..++++|.+|..+|++++|+.++++|+++ .|+++. ++.+|+.+..
T Consensus 371 a~~l~nLa~~~~~~g~~~eA~~~~~~Al~i~~~~lG~~Hp~~~~~~~~l~~~~~ 424 (429)
T 3qwp_A 371 GVQVMKVGKLQLHQGMFPQAMKNLRLAFDIMRVTHGREHSLIEDLILLLEECDA 424 (429)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCTTSHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHH
Confidence 899999999999999999999999999875 566654 4555665554
No 216
>3bee_A Putative YFRE protein; putaive YFRE protein, structural GE PSI-2, protein structure initiative; 2.15A {Vibrio parahaemolyticus rimd 2210633}
Probab=98.38 E-value=3.2e-06 Score=69.23 Aligned_cols=72 Identities=15% Similarity=0.103 Sum_probs=68.0
Q ss_pred CCCcHHHHHHHHHHHHHCCC---HHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhCCChHHHHHHHHHHHHhCCCC
Q 006120 231 CPTHFRALKLLGSALFGVGE---YRAAVKALEEAIFIKPDYADAHCDLASALHAMGEDERAIEVFQKAIDLKPGH 302 (660)
Q Consensus 231 ~p~~~~~~~~lg~~~~~~g~---~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~ 302 (660)
+|+++..+..+|.+++..++ .++|...++++++++|+++.++..+|..+...|+|++|+.+|+++++.+|..
T Consensus 2 ~p~~~~~~~~~a~al~~~~~~~~~~~A~~~l~~AL~~dp~~~rA~~~lg~~~~~~g~y~~Ai~~w~~~l~~~p~~ 76 (93)
T 3bee_A 2 NAVTATQLAAKATTLYYLHKQAMTDEVSLLLEQALQLEPYNEAALSLIANDHFISFRFQEAIDTWVLLLDSNDPN 76 (93)
T ss_dssp CCCCHHHHHHHHHHHHHTTTTCCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTCCCTT
T ss_pred CCCCHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHCcCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCC
Confidence 68999999999999987665 7999999999999999999999999999999999999999999999999884
No 217
>1pc2_A Mitochondria fission protein; unknown function; NMR {Homo sapiens} SCOP: a.118.8.1
Probab=98.36 E-value=4.3e-06 Score=74.22 Aligned_cols=85 Identities=14% Similarity=0.071 Sum_probs=52.2
Q ss_pred HHHHHHHHHHHHhCCCCHHHHHHHHHHHHhCC---ChHHHHHHHHHHHHhC-C-CCHHHHHHHHHHHHHhcCCCHHHHHH
Q 006120 252 RAAVKALEEAIFIKPDYADAHCDLASALHAMG---EDERAIEVFQKAIDLK-P-GHVDALYNLGGLYMDLGAGETEEAKK 326 (660)
Q Consensus 252 ~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g---~~~~A~~~~~~al~~~-p-~~~~a~~~La~~~~~~~~g~~~eA~~ 326 (660)
..+.+.|.+.+..++.+..+.+++|.++.+.+ +.++++..++..++.+ | +..+++++||..+.++ |+|++|++
T Consensus 15 ~~~~~~y~~e~~~~~~~~~~~F~ya~~Lv~S~~~~~~~~gI~lLe~ll~~~~p~~~rd~lY~LAv~~~kl--~~Y~~A~~ 92 (152)
T 1pc2_A 15 LKFEKKFQSEKAAGSVSKSTQFEYAWCLVRSKYNDDIRKGIVLLEELLPKGSKEEQRDYVFYLAVGNYRL--KEYEKALK 92 (152)
T ss_dssp HHHHHHHHHHHHTTCCCHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHT--SCHHHHHH
T ss_pred HHHHHHHHHHHccCCCcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCCccchHHHHHHHHHHHHHc--cCHHHHHH
Confidence 34555555555555666666666666666655 4446666666666665 4 3456666666666666 66666666
Q ss_pred HHHHHHcccCCh
Q 006120 327 ALKEALKMTNRV 338 (660)
Q Consensus 327 ~~~~al~l~p~~ 338 (660)
+++++++++|+.
T Consensus 93 y~~~lL~ieP~n 104 (152)
T 1pc2_A 93 YVRGLLQTEPQN 104 (152)
T ss_dssp HHHHHHHHCTTC
T ss_pred HHHHHHhcCCCC
Confidence 666666666653
No 218
>3u64_A Protein TP_0956; tetratrico peptide repeat, protein-prote interaction, syphilis, lipoprotein, transport protein; 2.30A {Treponema pallidum subsp} PDB: 4di3_A 4di4_A*
Probab=98.35 E-value=1.4e-05 Score=78.56 Aligned_cols=86 Identities=20% Similarity=0.194 Sum_probs=79.5
Q ss_pred CHHHHHHHHHHHHHhCCC--cHHHHHHHHHHHHHC-----CCHHHHHHHHHHHHHhCCCC-HHHHHHHHHHHHh-CCChH
Q 006120 216 MVLSACEYYRESAILCPT--HFRALKLLGSALFGV-----GEYRAAVKALEEAIFIKPDY-ADAHCDLASALHA-MGEDE 286 (660)
Q Consensus 216 ~~~~A~~~~~~al~~~p~--~~~~~~~lg~~~~~~-----g~~~~A~~~~~~al~~~p~~-~~~~~~la~~~~~-~g~~~ 286 (660)
...+|...++++++++|+ +..+|..+|.+|... |+.++|.++|++|++++|+. ..+++.+|..+.. +|+++
T Consensus 178 ~l~~A~a~lerAleLDP~~~~GsA~~~LG~lY~~vPp~~gGd~ekA~~~ferAL~LnP~~~id~~v~YA~~l~~~~gd~~ 257 (301)
T 3u64_A 178 TVHAAVMMLERACDLWPSYQEGAVWNVLTKFYAAAPESFGGGMEKAHTAFEHLTRYCSAHDPDHHITYADALCIPLNNRA 257 (301)
T ss_dssp HHHHHHHHHHHHHHHCTTHHHHHHHHHHHHHHHHSCTTTTCCHHHHHHHHHHHHHHCCTTCSHHHHHHHHHTTTTTTCHH
T ss_pred hHHHHHHHHHHHHHhCCCcccCHHHHHHHHHHHhCCCccCCCHHHHHHHHHHHHHhCCCCCchHHHHHHHHHHHhcCCHH
Confidence 357899999999999999 677999999999995 99999999999999999975 9999999999988 59999
Q ss_pred HHHHHHHHHHHhCCC
Q 006120 287 RAIEVFQKAIDLKPG 301 (660)
Q Consensus 287 ~A~~~~~~al~~~p~ 301 (660)
+|..++++++...|.
T Consensus 258 ~a~~~L~kAL~a~p~ 272 (301)
T 3u64_A 258 GFDEALDRALAIDPE 272 (301)
T ss_dssp HHHHHHHHHHHCCGG
T ss_pred HHHHHHHHHHcCCCC
Confidence 999999999998776
No 219
>2e5r_A Dystrobrevin alpha; ZZ domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=98.34 E-value=1.3e-07 Score=70.24 Aligned_cols=57 Identities=25% Similarity=0.582 Sum_probs=47.6
Q ss_pred cCccccCCCccccccc-cccccccccccc-cccccccccccCCCCCCCCccccchhhccCC
Q 006120 582 AGDRNRHGRHVCSVCR-YPIIGSRFKEMK-SHFSLCSQCYSEGKVPPTFKQDEYKFKEYGS 640 (660)
Q Consensus 582 ~~~~~~~~~~~~~~~~-~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 640 (660)
+.....|. +.|..|+ .||+|.|||=+. .+|.||..||+.|+.+..-+ .+..|+||.|
T Consensus 4 ~~~~v~H~-~~Cd~C~~~pi~G~RykC~~C~d~DLC~~C~~~g~~~~~H~-~~H~~~~~~t 62 (63)
T 2e5r_A 4 GSSGVFHP-VECSYCHSESMMGFRYRCQQCHNYQLCQDCFWRGHAGGSHS-NQHQMKEYTS 62 (63)
T ss_dssp CSSSCCSC-SCCSSSCCCSSCSCEEEESSCSSCEECHHHHHHCCCCSSSC-TTCCEEEECC
T ss_pred CcCCceeC-CCCcCCCCcceecceEEecCCCCchhHHHHHhCCCcCCCCC-CCCCEEEEeC
Confidence 45678899 9999999 589999999865 58999999999999876655 3678888875
No 220
>1pc2_A Mitochondria fission protein; unknown function; NMR {Homo sapiens} SCOP: a.118.8.1
Probab=98.29 E-value=1e-05 Score=71.75 Aligned_cols=94 Identities=14% Similarity=0.021 Sum_probs=71.6
Q ss_pred HHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcC---CHHHHHHHHHHHHHHh-ccCCCchhchHHHHHHHHHHHHHHCCC
Q 006120 141 FKEALVSFKRACELQPTDVRPHFRAGNCLYVLG---RYREAKEEYLLALEAA-ETGGNQWAYLLPQIYVNLGIALEGEGM 216 (660)
Q Consensus 141 ~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g---~~~~A~~~~~~al~~~-p~~~~~~~~~~~~~~~~la~~~~~~g~ 216 (660)
...+.+.|.+.++.++.+.++.+++|.++...+ +.++++..++.+++.+ |.. ..+.++++|..+.++|+
T Consensus 14 l~~~~~~y~~e~~~~~~~~~~~F~ya~~Lv~S~~~~~~~~gI~lLe~ll~~~~p~~-------~rd~lY~LAv~~~kl~~ 86 (152)
T 1pc2_A 14 LLKFEKKFQSEKAAGSVSKSTQFEYAWCLVRSKYNDDIRKGIVLLEELLPKGSKEE-------QRDYVFYLAVGNYRLKE 86 (152)
T ss_dssp HHHHHHHHHHHHHTTCCCHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHSCHHH-------HHHHHHHHHHHHHHTSC
T ss_pred HHHHHHHHHHHHccCCCcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCCccc-------hHHHHHHHHHHHHHccC
Confidence 456667777777777778888888888888877 5568888888888877 521 56778888888888888
Q ss_pred HHHHHHHHHHHHHhCCCcHHHHHHH
Q 006120 217 VLSACEYYRESAILCPTHFRALKLL 241 (660)
Q Consensus 217 ~~~A~~~~~~al~~~p~~~~~~~~l 241 (660)
|++|..+++++++++|++..+....
T Consensus 87 Y~~A~~y~~~lL~ieP~n~QA~~Lk 111 (152)
T 1pc2_A 87 YEKALKYVRGLLQTEPQNNQAKELE 111 (152)
T ss_dssp HHHHHHHHHHHHHHCTTCHHHHHHH
T ss_pred HHHHHHHHHHHHhcCCCCHHHHHHH
Confidence 8888888888888888877665543
No 221
>2v5f_A Prolyl 4-hydroxylase subunit alpha-1; endoplasmic reticulum, metal-binding, oxidoreductase; 2.03A {Homo sapiens} PDB: 1tjc_A
Probab=98.28 E-value=7.3e-06 Score=68.61 Aligned_cols=74 Identities=23% Similarity=0.215 Sum_probs=39.4
Q ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHhC-------CCCHHHHHHHHHHHHhCCChHHHHHHHHHHHHhCCCCHHHHHHH
Q 006120 237 ALKLLGSALFGVGEYRAAVKALEEAIFIK-------PDYADAHCDLASALHAMGEDERAIEVFQKAIDLKPGHVDALYNL 309 (660)
Q Consensus 237 ~~~~lg~~~~~~g~~~~A~~~~~~al~~~-------p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~L 309 (660)
-++.+|..++..|+|..|+..|++|++.. +....++..+|.++.++|++++|+.+++++++++|++..+..++
T Consensus 7 dc~~lG~~~~~~~~y~~A~~W~~~Al~~~~~~~~~~~~~~~i~~~L~~~~~~~g~~~~A~~~~~~al~l~P~~~~~~~n~ 86 (104)
T 2v5f_A 7 DCFELGKVAYTEADYYHTELWMEQALRQLDEGEISTIDKVSVLDYLSYAVYQQGDLDKALLLTKKLLELDPEHQRANGNL 86 (104)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCCSSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHH
T ss_pred HHHHHHHHHHHccchHHHHHHHHHHHHhhhccCCCcccHHHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCCCHHHHhhH
Confidence 34445555555555555555555555432 12345555555555555555555555555555555555555554
Q ss_pred H
Q 006120 310 G 310 (660)
Q Consensus 310 a 310 (660)
+
T Consensus 87 ~ 87 (104)
T 2v5f_A 87 K 87 (104)
T ss_dssp H
T ss_pred H
Confidence 4
No 222
>2v5f_A Prolyl 4-hydroxylase subunit alpha-1; endoplasmic reticulum, metal-binding, oxidoreductase; 2.03A {Homo sapiens} PDB: 1tjc_A
Probab=98.22 E-value=1.1e-05 Score=67.51 Aligned_cols=77 Identities=14% Similarity=0.151 Sum_probs=70.6
Q ss_pred HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-------CCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHH
Q 006120 200 LPQIYVNLGIALEGEGMVLSACEYYRESAILC-------PTHFRALKLLGSALFGVGEYRAAVKALEEAIFIKPDYADAH 272 (660)
Q Consensus 200 ~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~-------p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~ 272 (660)
.+.-++.+|..+...|+|..|+..|++|++.. +....++..+|.++.++|+++.|+.++++++.+.|++..+.
T Consensus 4 sa~dc~~lG~~~~~~~~y~~A~~W~~~Al~~~~~~~~~~~~~~~i~~~L~~~~~~~g~~~~A~~~~~~al~l~P~~~~~~ 83 (104)
T 2v5f_A 4 TAEDCFELGKVAYTEADYYHTELWMEQALRQLDEGEISTIDKVSVLDYLSYAVYQQGDLDKALLLTKKLLELDPEHQRAN 83 (104)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCCSSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHH
T ss_pred CHHHHHHHHHHHHHccchHHHHHHHHHHHHhhhccCCCcccHHHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCCCHHHH
Confidence 45678899999999999999999999999863 34688999999999999999999999999999999999998
Q ss_pred HHHH
Q 006120 273 CDLA 276 (660)
Q Consensus 273 ~~la 276 (660)
.+++
T Consensus 84 ~n~~ 87 (104)
T 2v5f_A 84 GNLK 87 (104)
T ss_dssp HHHH
T ss_pred hhHH
Confidence 8887
No 223
>4g26_A Pentatricopeptide repeat-containing protein AT2G3 mitochondrial; metallonuclease, prorp, ribonuclease, PIN, tRNA processing, NYN domain; 1.75A {Arabidopsis thaliana} PDB: 4g23_A* 4g25_A 4g24_A
Probab=98.22 E-value=0.0001 Score=80.16 Aligned_cols=178 Identities=7% Similarity=-0.065 Sum_probs=133.1
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCC---------HHHHHHHHHHHHHHhccCCCchh
Q 006120 128 HMAIGRVLYEHQLFKEALVSFKRACELQ-PTDVRPHFRAGNCLYVLGR---------YREAKEEYLLALEAAETGGNQWA 197 (660)
Q Consensus 128 ~~~lg~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~la~~~~~~g~---------~~~A~~~~~~al~~~p~~~~~~~ 197 (660)
+..+-..+.+.|+.++|+..|+++.+.. +-+...|..+-.++...+. .++|.+.|++.....-..
T Consensus 29 l~~~id~c~k~G~~~~A~~lf~~M~~~Gv~pd~~tyn~Li~~c~~~~~~~~~~~~~~l~~A~~lf~~M~~~G~~P----- 103 (501)
T 4g26_A 29 LKQKLDMCSKKGDVLEALRLYDEARRNGVQLSQYHYNVLLYVCSLAEAATESSPNPGLSRGFDIFKQMIVDKVVP----- 103 (501)
T ss_dssp HHHHHHHTTTSCCHHHHHHHHHHHHHHTCCCCHHHHHHHHHHHTTCCCCSSSSCCHHHHHHHHHHHHHHHTTCCC-----
T ss_pred HHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHhHHHHHHHHHHhCCchhhhhhcchHHHHHHHHHHHHHhCCCC-----
Confidence 4555677889999999999999998864 2356667766666655443 678888888877653221
Q ss_pred chHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHH
Q 006120 198 YLLPQIYVNLGIALEGEGMVLSACEYYRESAILC-PTHFRALKLLGSALFGVGEYRAAVKALEEAIFIK-PDYADAHCDL 275 (660)
Q Consensus 198 ~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l 275 (660)
...+|..+...+.+.|++++|...+++..+.. .-+...|..+-..|.+.|+.++|...+++..+.. .-+...|..+
T Consensus 104 --d~~tyn~lI~~~~~~g~~~~A~~l~~~M~~~g~~Pd~~tyn~lI~~~~~~g~~~~A~~l~~~M~~~G~~Pd~~ty~~L 181 (501)
T 4g26_A 104 --NEATFTNGARLAVAKDDPEMAFDMVKQMKAFGIQPRLRSYGPALFGFCRKGDADKAYEVDAHMVESEVVPEEPELAAL 181 (501)
T ss_dssp --CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCCCCHHHHHHH
T ss_pred --CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCccceehHHHHHHHHCCCHHHHHHHHHHHHhcCCCCCHHHHHHH
Confidence 45678888888999999999999999887753 2357788888888999999999999999887763 2257788888
Q ss_pred HHHHHhCCChHHHHHHHHHHHHh--CCCCHHHHHHHHHHH
Q 006120 276 ASALHAMGEDERAIEVFQKAIDL--KPGHVDALYNLGGLY 313 (660)
Q Consensus 276 a~~~~~~g~~~~A~~~~~~al~~--~p~~~~a~~~La~~~ 313 (660)
-..+.+.|+.++|...+++..+. .|+ ...+..+-..+
T Consensus 182 i~~~~~~g~~d~A~~ll~~Mr~~g~~ps-~~T~~~l~~~F 220 (501)
T 4g26_A 182 LKVSMDTKNADKVYKTLQRLRDLVRQVS-KSTFDMIEEWF 220 (501)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHTSSBC-HHHHHHHHHHH
T ss_pred HHHHhhCCCHHHHHHHHHHHHHhCCCcC-HHHHHHHHHHH
Confidence 88999999999999999988765 344 44444444333
No 224
>4g26_A Pentatricopeptide repeat-containing protein AT2G3 mitochondrial; metallonuclease, prorp, ribonuclease, PIN, tRNA processing, NYN domain; 1.75A {Arabidopsis thaliana} PDB: 4g23_A* 4g25_A 4g24_A
Probab=98.10 E-value=0.00035 Score=75.93 Aligned_cols=175 Identities=11% Similarity=-0.021 Sum_probs=138.3
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHhccCCCchhchHHHHHHHHHHHHHHCC---------CHHHHHHHHHHHHHhC
Q 006120 161 PHFRAGNCLYVLGRYREAKEEYLLALEAAETGGNQWAYLLPQIYVNLGIALEGEG---------MVLSACEYYRESAILC 231 (660)
Q Consensus 161 ~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~la~~~~~~g---------~~~~A~~~~~~al~~~ 231 (660)
.+..+-..+.+.|+.++|++.|++..+..-.. ...+|..+-.++...+ ..++|.+.|++.....
T Consensus 28 ~l~~~id~c~k~G~~~~A~~lf~~M~~~Gv~p-------d~~tyn~Li~~c~~~~~~~~~~~~~~l~~A~~lf~~M~~~G 100 (501)
T 4g26_A 28 LLKQKLDMCSKKGDVLEALRLYDEARRNGVQL-------SQYHYNVLLYVCSLAEAATESSPNPGLSRGFDIFKQMIVDK 100 (501)
T ss_dssp HHHHHHHHTTTSCCHHHHHHHHHHHHHHTCCC-------CHHHHHHHHHHHTTCCCCSSSSCCHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCC-------CHhHHHHHHHHHHhCCchhhhhhcchHHHHHHHHHHHHHhC
Confidence 35555677889999999999999998764321 3455666666665444 3788999999987753
Q ss_pred -CCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHhCCChHHHHHHHHHHHHhC-CCCHHHHHH
Q 006120 232 -PTHFRALKLLGSALFGVGEYRAAVKALEEAIFIK-PDYADAHCDLASALHAMGEDERAIEVFQKAIDLK-PGHVDALYN 308 (660)
Q Consensus 232 -p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~-p~~~~a~~~ 308 (660)
+-+...|..+...+.+.|++++|...+++..+.. .-+...|..+-..|.+.|+.++|...|++..+.. .-+...|..
T Consensus 101 ~~Pd~~tyn~lI~~~~~~g~~~~A~~l~~~M~~~g~~Pd~~tyn~lI~~~~~~g~~~~A~~l~~~M~~~G~~Pd~~ty~~ 180 (501)
T 4g26_A 101 VVPNEATFTNGARLAVAKDDPEMAFDMVKQMKAFGIQPRLRSYGPALFGFCRKGDADKAYEVDAHMVESEVVPEEPELAA 180 (501)
T ss_dssp CCCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCCCCHHHHHH
T ss_pred CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCccceehHHHHHHHHCCCHHHHHHHHHHHHhcCCCCCHHHHHH
Confidence 2357789999999999999999999999988763 2357889999999999999999999999998764 224778999
Q ss_pred HHHHHHHhcCCCHHHHHHHHHHHHccc--CChhHHHHH
Q 006120 309 LGGLYMDLGAGETEEAKKALKEALKMT--NRVELHDAV 344 (660)
Q Consensus 309 La~~~~~~~~g~~~eA~~~~~~al~l~--p~~~~~~~~ 344 (660)
|..++... |+.++|.+.+++.-+.. |+......+
T Consensus 181 Li~~~~~~--g~~d~A~~ll~~Mr~~g~~ps~~T~~~l 216 (501)
T 4g26_A 181 LLKVSMDT--KNADKVYKTLQRLRDLVRQVSKSTFDMI 216 (501)
T ss_dssp HHHHHHHT--TCHHHHHHHHHHHHHHTSSBCHHHHHHH
T ss_pred HHHHHhhC--CCHHHHHHHHHHHHHhCCCcCHHHHHHH
Confidence 99999998 99999999999987654 555444433
No 225
>4h7y_A Dual specificity protein kinase TTK; mitotic checkpoint kinase, chromosome instability, cancer, tetratricopeptide repeat (TPR) motif; 1.80A {Homo sapiens} PDB: 4h7x_A
Probab=97.85 E-value=0.0004 Score=60.51 Aligned_cols=118 Identities=11% Similarity=0.003 Sum_probs=96.6
Q ss_pred hCCCCHHHHHHHHHHHHHcCCH------HHHHHHHHHHHHHhccCCCchhchHHHHHHHHHHHHHHCCCHHHHHHHHHHH
Q 006120 154 LQPTDVRPHFRAGNCLYVLGRY------REAKEEYLLALEAAETGGNQWAYLLPQIYVNLGIALEGEGMVLSACEYYRES 227 (660)
Q Consensus 154 ~~p~~~~~~~~la~~~~~~g~~------~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a 227 (660)
+.|++++.|..........|+. ++-++.|++|+...|............+|...|.. ...++.++|.+.|+.+
T Consensus 8 ~~p~~yd~W~~yl~llE~~g~p~~d~~l~rlrd~YerAia~~Pp~k~~~wrrYI~LWIrYA~~-~ei~D~d~aR~vy~~a 86 (161)
T 4h7y_A 8 MMANNPEDWLSLLLKLEKNSVPLSDALLNKLIGRYSQAIEALPPDKYGQNESFARIQVRFAEL-KAIQEPDDARDYFQMA 86 (161)
T ss_dssp --CCSHHHHHHHHHHHHHHTCSCCHHHHHHHHHHHHHHHHHSCGGGGTTCHHHHHHHHHHHHH-HHHHCGGGCHHHHHHH
T ss_pred eCCCCHHHHHHHHHHHHHcCCCchhhHHHHHHHHHHHHHHcCCccccccHHHHHHHHHHHHHH-HHhcCHHHHHHHHHHH
Confidence 5689999999999999999999 89999999999988775433333367777777865 5558999999999999
Q ss_pred HHhCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHH
Q 006120 228 AILCPTHFRALKLLGSALFGVGEYRAAVKALEEAIFIKPDYADAH 272 (660)
Q Consensus 228 l~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~ 272 (660)
+.+....+.+|...|....++|+...|.+.+.+|+.+.|.....+
T Consensus 87 ~~~hKkFAKiwi~~AqFEiRqgnl~kARkILg~AiG~~~k~~~~l 131 (161)
T 4h7y_A 87 RANCKKFAFVHISFAQFELSQGNVKKSKQLLQKAVERGAVPLEML 131 (161)
T ss_dssp HHHCTTBHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCBCHHHH
T ss_pred HHHhHHHHHHHHHHHHHHHHcccHHHHHHHHHHHhccCCCcHHHH
Confidence 888777888999999999999999999999999999988765443
No 226
>1nzn_A CGI-135 protein, fission protein FIS1P; TPR, unknown function; 2.00A {Homo sapiens} SCOP: a.118.8.1 PDB: 1iyg_A
Probab=97.66 E-value=0.00055 Score=58.38 Aligned_cols=96 Identities=14% Similarity=0.013 Sum_probs=71.0
Q ss_pred HHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHCCCHHH---HHHHHHHHHHhC-C-CCHHHHHHHHHHHHhCCChHHHHHH
Q 006120 217 VLSACEYYRESAILCPTHFRALKLLGSALFGVGEYRA---AVKALEEAIFIK-P-DYADAHCDLASALHAMGEDERAIEV 291 (660)
Q Consensus 217 ~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~---A~~~~~~al~~~-p-~~~~~~~~la~~~~~~g~~~~A~~~ 291 (660)
...+...|.+.+..++....+.+++|+++....+... ++..++..+... | ..-+.++.||..+.++|+|++|..+
T Consensus 17 l~~~~~~y~~e~~~~~~s~~~~F~yAw~Lv~S~~~~d~~~GI~lLe~l~~~~~p~~~Rd~lY~LAvg~yklg~Y~~A~~~ 96 (126)
T 1nzn_A 17 LLKFEKKFQSEKAAGSVSKSTQFEYAWCLVRTRYNDDIRKGIVLLEELLPKGSKEEQRDYVFYLAVGNYRLKEYEKALKY 96 (126)
T ss_dssp HHHHHHHHHHHHHHSCCCHHHHHHHHHHHTTSSSHHHHHHHHHHHHHHTTTSCHHHHHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred HHHHHHHHHHHhccCCCcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHhhhHHHHHHH
Confidence 4455666677767677778888888888888777665 778888777765 4 3466778888888888888888888
Q ss_pred HHHHHHhCCCCHHHHHHHHHH
Q 006120 292 FQKAIDLKPGHVDALYNLGGL 312 (660)
Q Consensus 292 ~~~al~~~p~~~~a~~~La~~ 312 (660)
++..++..|++..+......+
T Consensus 97 ~~~lL~~eP~n~QA~~Lk~~i 117 (126)
T 1nzn_A 97 VRGLLQTEPQNNQAKELERLI 117 (126)
T ss_dssp HHHHHHHCTTCHHHHHHHHHH
T ss_pred HHHHHHhCCCCHHHHHHHHHH
Confidence 888888888887766554444
No 227
>1nzn_A CGI-135 protein, fission protein FIS1P; TPR, unknown function; 2.00A {Homo sapiens} SCOP: a.118.8.1 PDB: 1iyg_A
Probab=97.60 E-value=0.00093 Score=56.99 Aligned_cols=95 Identities=13% Similarity=-0.010 Sum_probs=65.5
Q ss_pred CHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHH---HHHHHHHHHHHh-ccCCCchhchHHHHHHHHHHHHHHCC
Q 006120 140 LFKEALVSFKRACELQPTDVRPHFRAGNCLYVLGRYRE---AKEEYLLALEAA-ETGGNQWAYLLPQIYVNLGIALEGEG 215 (660)
Q Consensus 140 ~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~---A~~~~~~al~~~-p~~~~~~~~~~~~~~~~la~~~~~~g 215 (660)
....+...|.+.+..++....+.+++|.++....+... ++..++..++.. |.. ....++.+|..+.++|
T Consensus 16 ~l~~~~~~y~~e~~~~~~s~~~~F~yAw~Lv~S~~~~d~~~GI~lLe~l~~~~~p~~-------~Rd~lY~LAvg~yklg 88 (126)
T 1nzn_A 16 DLLKFEKKFQSEKAAGSVSKSTQFEYAWCLVRTRYNDDIRKGIVLLEELLPKGSKEE-------QRDYVFYLAVGNYRLK 88 (126)
T ss_dssp HHHHHHHHHHHHHHHSCCCHHHHHHHHHHHTTSSSHHHHHHHHHHHHHHTTTSCHHH-------HHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHhccCCCcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCCcch-------HHHHHHHHHHHHHHhh
Confidence 34455666666666666777777777777777776665 777777766654 311 5567777777777777
Q ss_pred CHHHHHHHHHHHHHhCCCcHHHHHHH
Q 006120 216 MVLSACEYYRESAILCPTHFRALKLL 241 (660)
Q Consensus 216 ~~~~A~~~~~~al~~~p~~~~~~~~l 241 (660)
+|++|..+++..++..|++..+....
T Consensus 89 ~Y~~A~~~~~~lL~~eP~n~QA~~Lk 114 (126)
T 1nzn_A 89 EYEKALKYVRGLLQTEPQNNQAKELE 114 (126)
T ss_dssp CHHHHHHHHHHHHHHCTTCHHHHHHH
T ss_pred hHHHHHHHHHHHHHhCCCCHHHHHHH
Confidence 88888777777777777776665443
No 228
>4h7y_A Dual specificity protein kinase TTK; mitotic checkpoint kinase, chromosome instability, cancer, tetratricopeptide repeat (TPR) motif; 1.80A {Homo sapiens} PDB: 4h7x_A
Probab=97.38 E-value=0.0013 Score=57.39 Aligned_cols=106 Identities=16% Similarity=0.077 Sum_probs=86.4
Q ss_pred hCCCcHHHHHHHHHHHHHCCCH------HHHHHHHHHHHHhCCCC--------HHHHHHHHHHHHhCCChHHHHHHHHHH
Q 006120 230 LCPTHFRALKLLGSALFGVGEY------RAAVKALEEAIFIKPDY--------ADAHCDLASALHAMGEDERAIEVFQKA 295 (660)
Q Consensus 230 ~~p~~~~~~~~lg~~~~~~g~~------~~A~~~~~~al~~~p~~--------~~~~~~la~~~~~~g~~~~A~~~~~~a 295 (660)
+.|++++.|........+.|+. +.-+..|++|+..-|.. ...|...|.. ...++.++|...|+.+
T Consensus 8 ~~p~~yd~W~~yl~llE~~g~p~~d~~l~rlrd~YerAia~~Pp~k~~~wrrYI~LWIrYA~~-~ei~D~d~aR~vy~~a 86 (161)
T 4h7y_A 8 MMANNPEDWLSLLLKLEKNSVPLSDALLNKLIGRYSQAIEALPPDKYGQNESFARIQVRFAEL-KAIQEPDDARDYFQMA 86 (161)
T ss_dssp --CCSHHHHHHHHHHHHHHTCSCCHHHHHHHHHHHHHHHHHSCGGGGTTCHHHHHHHHHHHHH-HHHHCGGGCHHHHHHH
T ss_pred eCCCCHHHHHHHHHHHHHcCCCchhhHHHHHHHHHHHHHHcCCccccccHHHHHHHHHHHHHH-HHhcCHHHHHHHHHHH
Confidence 5788899999888888888888 88888999998876642 5567777755 5668999999999999
Q ss_pred HHhCCCCHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHcccCCh
Q 006120 296 IDLKPGHVDALYNLGGLYMDLGAGETEEAKKALKEALKMTNRV 338 (660)
Q Consensus 296 l~~~p~~~~a~~~La~~~~~~~~g~~~eA~~~~~~al~l~p~~ 338 (660)
+.+....+..|...|..-..+ |+...|.+.+.+|+.+.|.+
T Consensus 87 ~~~hKkFAKiwi~~AqFEiRq--gnl~kARkILg~AiG~~~k~ 127 (161)
T 4h7y_A 87 RANCKKFAFVHISFAQFELSQ--GNVKKSKQLLQKAVERGAVP 127 (161)
T ss_dssp HHHCTTBHHHHHHHHHHHHHT--TCHHHHHHHHHHHHHTTCBC
T ss_pred HHHhHHHHHHHHHHHHHHHHc--ccHHHHHHHHHHHhccCCCc
Confidence 988777777888888877777 99999999999999998864
No 229
>3ffl_A Anaphase-promoting complex subunit 7; tetratricopeptide repeat motif, helis-turn-helix, cell cycle division, mitosis, TPR repeat; 2.50A {Homo sapiens}
Probab=97.16 E-value=0.0084 Score=53.42 Aligned_cols=141 Identities=13% Similarity=0.045 Sum_probs=87.1
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHhccCCCc-hhchHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC---CCcH
Q 006120 160 RPHFRAGNCLYVLGRYREAKEEYLLALEAAETGGNQ-WAYLLPQIYVNLGIALEGEGMVLSACEYYRESAILC---PTHF 235 (660)
Q Consensus 160 ~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~-~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~---p~~~ 235 (660)
.+++.-...+...|.|+.|+-....++.+..++++. .......++..+|..+...++|..|...|+++++.. +.+.
T Consensus 21 ~~l~dqik~L~d~~LY~sA~~La~lLlSl~~~~~~~~sp~~~~~~l~~ladalf~~~eyrrA~~~y~qALq~~k~l~k~~ 100 (167)
T 3ffl_A 21 MNVIDHVRDMAAAGLHSNVRLLSSLLLTLSNNNPELFSPPQKYQLLVYHADSLFHDKEYRNAVSKYTMALQQKKALSKTS 100 (167)
T ss_dssp CCHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSTTSSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHCC----
T ss_pred HHHHHHHHHHHHhhhHHHHHHHHHHHHHhhcCCcccccHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHhcCC
Confidence 345556677888999999999999988876554432 112267899999999999999999999999998753 2222
Q ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhCCChHHHHHHHHHHHHhCCCCHHHHHHHHHHH
Q 006120 236 RALKLLGSALFGVGEYRAAVKALEEAIFIKPDYADAHCDLASALHAMGEDERAIEVFQKAIDLKPGHVDALYNLGGLY 313 (660)
Q Consensus 236 ~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~La~~~ 313 (660)
.....++. ...+.. ...+ +.+.++.+.++.||.+++++++|+..++..-. ....+..-..||.+|
T Consensus 101 s~~~~~~~----~ss~p~-------s~~~-~~e~Elkykia~C~~~l~~~~~Ai~~Le~Ip~-k~Rt~kvnm~LakLy 165 (167)
T 3ffl_A 101 KVRPSTGN----SASTPQ-------SQCL-PSEIEVKYKLAECYTVLKQDKDAIAILDGIPS-RQRTPKINMLLANLY 165 (167)
T ss_dssp ---------------------------CC-CCHHHHHHHHHHHHHHTTCHHHHHHHHHTSCG-GGCCHHHHHHHHHHC
T ss_pred Cccccccc----cCCCcc-------cccc-cchHHHHHHHHHHHHHHCCHHHHHHHHhcCCc-hhcCHHHHHHHHHHh
Confidence 22111110 000000 1111 34567777788888888888888877665311 123355666666654
No 230
>3ffl_A Anaphase-promoting complex subunit 7; tetratricopeptide repeat motif, helis-turn-helix, cell cycle division, mitosis, TPR repeat; 2.50A {Homo sapiens}
Probab=97.07 E-value=0.0037 Score=55.73 Aligned_cols=136 Identities=14% Similarity=0.096 Sum_probs=84.5
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhC---CCC------HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhccCCCch
Q 006120 126 DGHMAIGRVLYEHQLFKEALVSFKRACELQ---PTD------VRPHFRAGNCLYVLGRYREAKEEYLLALEAAETGGNQW 196 (660)
Q Consensus 126 ~~~~~lg~~~~~~g~~~~A~~~~~~al~~~---p~~------~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~ 196 (660)
.+++.....++..|.|+.|+.....++... |+. ..++..+|.+++..++|..|...|+++++.......
T Consensus 21 ~~l~dqik~L~d~~LY~sA~~La~lLlSl~~~~~~~~sp~~~~~~l~~ladalf~~~eyrrA~~~y~qALq~~k~l~k-- 98 (167)
T 3ffl_A 21 MNVIDHVRDMAAAGLHSNVRLLSSLLLTLSNNNPELFSPPQKYQLLVYHADSLFHDKEYRNAVSKYTMALQQKKALSK-- 98 (167)
T ss_dssp CCHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSTTSSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHCC----
T ss_pred HHHHHHHHHHHHhhhHHHHHHHHHHHHHhhcCCcccccHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHhc--
Confidence 456677788889999999999988877653 331 357888999999999999999999999887653211
Q ss_pred hchHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHH
Q 006120 197 AYLLPQIYVNLGIALEGEGMVLSACEYYRESAILCPTHFRALKLLGSALFGVGEYRAAVKALEEAIFIKPDYADAHCDLA 276 (660)
Q Consensus 197 ~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la 276 (660)
.......++. ...+.. ... .+.+.++.+.++.|+.+.+++.+|+..++..-. ....+.+...||
T Consensus 99 ---~~s~~~~~~~----~ss~p~-------s~~-~~~e~Elkykia~C~~~l~~~~~Ai~~Le~Ip~-k~Rt~kvnm~La 162 (167)
T 3ffl_A 99 ---TSKVRPSTGN----SASTPQ-------SQC-LPSEIEVKYKLAECYTVLKQDKDAIAILDGIPS-RQRTPKINMLLA 162 (167)
T ss_dssp --------------------------------C-CCCHHHHHHHHHHHHHHTTCHHHHHHHHHTSCG-GGCCHHHHHHHH
T ss_pred ---CCCccccccc----cCCCcc-------ccc-ccchHHHHHHHHHHHHHHCCHHHHHHHHhcCCc-hhcCHHHHHHHH
Confidence 0111001110 000000 011 234566777788888888888888877664322 224566666777
Q ss_pred HHH
Q 006120 277 SAL 279 (660)
Q Consensus 277 ~~~ 279 (660)
.+|
T Consensus 163 kLy 165 (167)
T 3ffl_A 163 NLY 165 (167)
T ss_dssp HHC
T ss_pred HHh
Confidence 665
No 231
>2fc7_A ZZZ3 protein; structure genomics, ZZ domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.44.1.6
Probab=96.93 E-value=0.00042 Score=54.33 Aligned_cols=41 Identities=22% Similarity=0.420 Sum_probs=34.8
Q ss_pred ccccCCCccccccc-ccccccccccccc-c---cccccccccCCCC
Q 006120 584 DRNRHGRHVCSVCR-YPIIGSRFKEMKS-H---FSLCSQCYSEGKV 624 (660)
Q Consensus 584 ~~~~~~~~~~~~~~-~~~~~~~~~~~~~-~---~~~~~~~~~~~~~ 624 (660)
....|-++.|..|. .||+|.|||=..= + |.||..||..|..
T Consensus 15 ~~~~H~~~~Cd~C~~~pI~G~RykC~~C~d~~~yDLC~~C~~~g~~ 60 (82)
T 2fc7_A 15 GFVQHVGFKCDNCGIEPIQGVRWHCQDCPPEMSLDFCDSCSDCLHE 60 (82)
T ss_dssp TSCEESSCCCSSSCCSSEESCEEEESSSCSSSCCEEEGGGTTCCCC
T ss_pred cCCeeCcCCCCCCCCCcceeceEECCcCCCCcceecHHHHHhCccc
Confidence 46779999999999 5999999996543 4 9999999998864
No 232
>2dip_A Zinc finger SWIM domain-containing protein 2; ZZ domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.44.1.6
Probab=96.90 E-value=0.00025 Score=57.57 Aligned_cols=41 Identities=24% Similarity=0.596 Sum_probs=35.8
Q ss_pred ccccCCCccccccc-ccccccccccc-ccccccccccccCCCC
Q 006120 584 DRNRHGRHVCSVCR-YPIIGSRFKEM-KSHFSLCSQCYSEGKV 624 (660)
Q Consensus 584 ~~~~~~~~~~~~~~-~~~~~~~~~~~-~~~~~~~~~~~~~~~~ 624 (660)
-...|-+++|..|. .||+|.|||=+ -.+|.||..||..|+=
T Consensus 25 ~~~~H~gv~Cd~C~~~pI~G~RykC~~C~d~DLC~~C~~~~~H 67 (98)
T 2dip_A 25 RLDKHLGIPCNNCKQFPIEGKCYKCTECIEYHLCQECFDSYCH 67 (98)
T ss_dssp CCSSCCCCCCSSSCCSSCCSCEEEESSSSSCEEEHHHHHTTSG
T ss_pred cccccCCCCCcCCCCCCcccCeEECCCCCCccHHHHHHccCCC
Confidence 35789999999999 59999999964 4589999999999974
No 233
>3txn_A 26S proteasome regulatory complex subunit P42B; PCI domain, alpha solenoid, regulatory PART LID, hydrolase, protein binding; 2.50A {Drosophila melanogaster} PDB: 3txm_A
Probab=96.79 E-value=0.49 Score=48.91 Aligned_cols=236 Identities=11% Similarity=-0.038 Sum_probs=145.8
Q ss_pred HhHHHHHHHHHHHHHHHHHHHHHHHHHhhccCcHHHH--HHHHHHHHHHHH-cCCHHHHHHHHHHHHHhCCCCHH-----
Q 006120 89 EKRVFWEESTHDYAVFVKELGVLRNRADGARSREEAF--DGHMAIGRVLYE-HQLFKEALVSFKRACELQPTDVR----- 160 (660)
Q Consensus 89 ~~~~~l~~~~~~~g~~~~Al~~l~~a~~~~~~~~~~~--~~~~~lg~~~~~-~g~~~~A~~~~~~al~~~p~~~~----- 160 (660)
.+...+++++...+++++-.+.+..........+..- ..-..+-..+.. .+..+.-++.+..+++-..+.-.
T Consensus 20 ~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~kak~~k~v~~l~~~~~~~~~~~~~~~~~~~~~~~~a~~~~r~flr~ 99 (394)
T 3txn_A 20 QGILQQGELYKQEGKAKELADLIKVTRPFLSSISKAKAAKLVRSLVDMFLDMDAGTGIEVQLCKDCIEWAKQEKRTFLRQ 99 (394)
T ss_dssp HHHHHHHHHHHHHTCHHHHHHHHHHTTTGGGGSCHHHHHHHHHHHHHHHTTSCCCHHHHHHHHHHHHHHHHHTTCHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhchHHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3455668888888888888888877665555333222 222222222222 35556666677777764322211
Q ss_pred -HHHHHHHHHHHcCCHHHHHHHHHHHHHHhccCCCchhchHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC---CCc--
Q 006120 161 -PHFRAGNCLYVLGRYREAKEEYLLALEAAETGGNQWAYLLPQIYVNLGIALEGEGMVLSACEYYRESAILC---PTH-- 234 (660)
Q Consensus 161 -~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~---p~~-- 234 (660)
.-..+|..|+..|+|.+|.+.+.+..+......+... ..+++.....+|...+++.++..++.++.... +.+
T Consensus 100 ~l~~kL~~l~~~~~~y~~a~~~i~~l~~~~~~~dd~~~--llev~lle~~~~~~~~n~~k~k~~l~~a~~~~~ai~~~p~ 177 (394)
T 3txn_A 100 SLEARLIALYFDTALYTEALALGAQLLRELKKLDDKNL--LVEVQLLESKTYHALSNLPKARAALTSARTTANAIYCPPK 177 (394)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTSSCTHH--HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHH
T ss_pred HHHHHHHHHHHHhhhHHHHHHHHHHHHHHHhccccchh--HHHHHHHHHHHHHHhccHHHHHHHHHHHHhhhccCCCCHH
Confidence 2347899999999999999999999987655433332 78889999999999999999999999987652 122
Q ss_pred --HHHHHHHHHHHH-HCCCHHHHHHHHHHHHHhCCCC-----HHHHHHHHHHHHhCCChHHHHHHHH-H-HHHhCCCCHH
Q 006120 235 --FRALKLLGSALF-GVGEYRAAVKALEEAIFIKPDY-----ADAHCDLASALHAMGEDERAIEVFQ-K-AIDLKPGHVD 304 (660)
Q Consensus 235 --~~~~~~lg~~~~-~~g~~~~A~~~~~~al~~~p~~-----~~~~~~la~~~~~~g~~~~A~~~~~-~-al~~~p~~~~ 304 (660)
+.....-|.++. ..++|..|...|-+++.-.... ..+...++.+-+..++..+--.... + ..........
T Consensus 178 i~a~i~~~~Gi~~l~~~rdyk~A~~~F~eaf~~f~~~~~~~~~~~lkYlvL~aLl~~~r~el~~~l~~~~~~~~~~pei~ 257 (394)
T 3txn_A 178 VQGALDLQSGILHAADERDFKTAFSYFYEAFEGFDSVDSVKALTSLKYMLLCKIMLGQSDDVNQLVSGKLAITYSGRDID 257 (394)
T ss_dssp HHHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHTTCGGGHHHHHHSHHHHTTCSHHHH
T ss_pred HHHHHHHHhhHHHHHhccCHHHHHHHHHHHHhcccccccHHHHHHHHHHHHHHHHcCCHHHHHHHhccccccccCCccHH
Confidence 334555688888 8999999999999987543221 2233344555555555322222211 1 1112111133
Q ss_pred HHHHHHHHHHHhcCCCHHHHHHHHH
Q 006120 305 ALYNLGGLYMDLGAGETEEAKKALK 329 (660)
Q Consensus 305 a~~~La~~~~~~~~g~~~eA~~~~~ 329 (660)
.+..+..++.. +++.+-...++
T Consensus 258 ~l~~L~~a~~~---~dl~~f~~iL~ 279 (394)
T 3txn_A 258 AMKSVAEASHK---RSLADFQAALK 279 (394)
T ss_dssp HHHHHHHHHHT---TCHHHHHHHHH
T ss_pred HHHHHHHHHHh---CCHHHHHHHHH
Confidence 45566666653 56655544443
No 234
>1y8m_A FIS1; mitochondria, unknown function; NMR {Saccharomyces cerevisiae} SCOP: a.118.8.1
Probab=96.58 E-value=0.062 Score=46.48 Aligned_cols=71 Identities=13% Similarity=0.053 Sum_probs=32.2
Q ss_pred HHHHHHHHHHHHHCCCH---HHHHHHHHHHHHhCCC-CHHHHHHHHHHHHhCCChHHHHHHHHHHHHhCCCCHHH
Q 006120 235 FRALKLLGSALFGVGEY---RAAVKALEEAIFIKPD-YADAHCDLASALHAMGEDERAIEVFQKAIDLKPGHVDA 305 (660)
Q Consensus 235 ~~~~~~lg~~~~~~g~~---~~A~~~~~~al~~~p~-~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~a 305 (660)
..+.+++|+++.+..+. .+++..++..+...|. .-+.++.||..+.++|+|++|..+.+..++..|++..+
T Consensus 39 ~~t~F~YAw~Lv~S~~~~di~~GI~LLe~l~~~~~~~~RdcLYyLAvg~ykl~~Y~~Ar~y~d~lL~~eP~n~QA 113 (144)
T 1y8m_A 39 IQSRFNYAWGLIKSTDVNDERLGVKILTDIYKEAESRRRECLYYLTIGCYKLGEYSMAKRYVDTLFEHERNNKQV 113 (144)
T ss_dssp HHHHHHHHHHHHHSSSHHHHHHHHHHHHHHHHHCCSTHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHTCCCCHHH
T ss_pred HHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCccchhHHHHHHHHHHHHhhhHHHHHHHHHHHHhcCCCcHHH
Confidence 44444444444444332 2344444444444442 23444444444444444444444444444444444433
No 235
>1y8m_A FIS1; mitochondria, unknown function; NMR {Saccharomyces cerevisiae} SCOP: a.118.8.1
Probab=96.49 E-value=0.097 Score=45.27 Aligned_cols=74 Identities=12% Similarity=-0.077 Sum_probs=38.1
Q ss_pred CHHHHHHHHHHHHHcCCHH---HHHHHHHHHHHHhccCCCchhchHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCc
Q 006120 158 DVRPHFRAGNCLYVLGRYR---EAKEEYLLALEAAETGGNQWAYLLPQIYVNLGIALEGEGMVLSACEYYRESAILCPTH 234 (660)
Q Consensus 158 ~~~~~~~la~~~~~~g~~~---~A~~~~~~al~~~p~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~ 234 (660)
...+.+++|.++....+.. +++..++..+...|.. ....++.+|..+.++|+|++|..+.+..++..|++
T Consensus 38 s~~t~F~YAw~Lv~S~~~~di~~GI~LLe~l~~~~~~~-------~RdcLYyLAvg~ykl~~Y~~Ar~y~d~lL~~eP~n 110 (144)
T 1y8m_A 38 TIQSRFNYAWGLIKSTDVNDERLGVKILTDIYKEAESR-------RRECLYYLTIGCYKLGEYSMAKRYVDTLFEHERNN 110 (144)
T ss_dssp CHHHHHHHHHHHHHSSSHHHHHHHHHHHHHHHHHCCST-------HHHHHHHHHHHHHTTTCHHHHHHHHHHHHHTCCCC
T ss_pred cHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCccc-------hhHHHHHHHHHHHHhhhHHHHHHHHHHHHhcCCCc
Confidence 4455555555555544332 4555555555544321 44455555555555555555555555555555555
Q ss_pred HHHH
Q 006120 235 FRAL 238 (660)
Q Consensus 235 ~~~~ 238 (660)
..+.
T Consensus 111 ~QA~ 114 (144)
T 1y8m_A 111 KQVG 114 (144)
T ss_dssp HHHH
T ss_pred HHHH
Confidence 4443
No 236
>3txn_A 26S proteasome regulatory complex subunit P42B; PCI domain, alpha solenoid, regulatory PART LID, hydrolase, protein binding; 2.50A {Drosophila melanogaster} PDB: 3txm_A
Probab=96.27 E-value=0.2 Score=51.90 Aligned_cols=171 Identities=10% Similarity=-0.080 Sum_probs=121.3
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCH-----HHHHHHHHHHHH-cCCHHHHHHHHHHHHHHhccCCCchhch
Q 006120 126 DGHMAIGRVLYEHQLFKEALVSFKRACELQPTDV-----RPHFRAGNCLYV-LGRYREAKEEYLLALEAAETGGNQWAYL 199 (660)
Q Consensus 126 ~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~-----~~~~~la~~~~~-~g~~~~A~~~~~~al~~~p~~~~~~~~~ 199 (660)
.+.+.+|..|...|++++-.+++......-+.-+ .....+-..+.. -+..+.-.+.+..+++......-.|.
T Consensus 20 ~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~kak~~k~v~~l~~~~~~~~~~~~~~~~~~~~~~~~a~~~~r~fl-- 97 (394)
T 3txn_A 20 QGILQQGELYKQEGKAKELADLIKVTRPFLSSISKAKAAKLVRSLVDMFLDMDAGTGIEVQLCKDCIEWAKQEKRTFL-- 97 (394)
T ss_dssp HHHHHHHHHHHHHTCHHHHHHHHHHTTTGGGGSCHHHHHHHHHHHHHHHTTSCCCHHHHHHHHHHHHHHHHHTTCHHH--
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhchHHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHHHHHHHHH--
Confidence 5678899999999999998888877655443322 222222222222 35566667777788876665433332
Q ss_pred HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCC------cHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC---CCC--
Q 006120 200 LPQIYVNLGIALEGEGMVLSACEYYRESAILCPT------HFRALKLLGSALFGVGEYRAAVKALEEAIFIK---PDY-- 268 (660)
Q Consensus 200 ~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~------~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~---p~~-- 268 (660)
...+-..+|..|...|+|.+|...+.+.++.-.. ..+++.....+|...+++.++...+.+|.... +.+
T Consensus 98 r~~l~~kL~~l~~~~~~y~~a~~~i~~l~~~~~~~dd~~~llev~lle~~~~~~~~n~~k~k~~l~~a~~~~~ai~~~p~ 177 (394)
T 3txn_A 98 RQSLEARLIALYFDTALYTEALALGAQLLRELKKLDDKNLLVEVQLLESKTYHALSNLPKARAALTSARTTANAIYCPPK 177 (394)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTSSCTHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHH
T ss_pred HHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHhccccchhHHHHHHHHHHHHHHhccHHHHHHHHHHHHhhhccCCCCHH
Confidence 2334568999999999999999999988774221 14567777889999999999999999987653 122
Q ss_pred --HHHHHHHHHHHH-hCCChHHHHHHHHHHHHh
Q 006120 269 --ADAHCDLASALH-AMGEDERAIEVFQKAIDL 298 (660)
Q Consensus 269 --~~~~~~la~~~~-~~g~~~~A~~~~~~al~~ 298 (660)
+.....-|..+. ..++|.+|..+|-++++.
T Consensus 178 i~a~i~~~~Gi~~l~~~rdyk~A~~~F~eaf~~ 210 (394)
T 3txn_A 178 VQGALDLQSGILHAADERDFKTAFSYFYEAFEG 210 (394)
T ss_dssp HHHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhhHHHHHhccCHHHHHHHHHHHHhc
Confidence 334556688888 899999999999888754
No 237
>3o48_A Mitochondria fission 1 protein; tetratricopeptide repeat fold, TPR, scaffold, peroxisome, membrane fission, protein binding; 1.75A {Saccharomyces cerevisiae} PDB: 2pqr_A 2pqn_A 3uux_A
Probab=96.24 E-value=0.059 Score=45.99 Aligned_cols=72 Identities=14% Similarity=-0.038 Sum_probs=33.1
Q ss_pred HHHHHHHHHHHHHcCCH---HHHHHHHHHHHHHhccCCCchhchHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCcH
Q 006120 159 VRPHFRAGNCLYVLGRY---REAKEEYLLALEAAETGGNQWAYLLPQIYVNLGIALEGEGMVLSACEYYRESAILCPTHF 235 (660)
Q Consensus 159 ~~~~~~la~~~~~~g~~---~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~ 235 (660)
+.+.+++|.++....+. .+++..++..++..|.. ..+.++.+|..+.++|+|++|..+.+..++..|++.
T Consensus 40 ~qt~F~yAw~Lv~S~~~~d~~~GI~LLe~l~~~~~~~-------~Rd~LYyLAvg~yklgdY~~Ar~y~d~lL~~eP~N~ 112 (134)
T 3o48_A 40 IQSRFNYAWGLIKSTDVNDERLGVKILTDIYKEAESR-------RRECLYYLTIGCYKLGEYSMAKRYVDTLFEHERNNK 112 (134)
T ss_dssp HHHHHHHHHHHHHSSCHHHHHHHHHHHHHHHHHCGGG-------HHHHHHHHHHHHHHHTCHHHHHHHHHHHHTTCTTCH
T ss_pred hhhHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCcch-------hHHHHHHHHHHHHHhhhHHHHHHHHHHHHhhCCCCH
Confidence 34444444444444332 23444444444443321 344444455555555555555555555555555544
Q ss_pred HH
Q 006120 236 RA 237 (660)
Q Consensus 236 ~~ 237 (660)
.+
T Consensus 113 QA 114 (134)
T 3o48_A 113 QV 114 (134)
T ss_dssp HH
T ss_pred HH
Confidence 43
No 238
>3o48_A Mitochondria fission 1 protein; tetratricopeptide repeat fold, TPR, scaffold, peroxisome, membrane fission, protein binding; 1.75A {Saccharomyces cerevisiae} PDB: 2pqr_A 2pqn_A 3uux_A
Probab=96.20 E-value=0.044 Score=46.82 Aligned_cols=70 Identities=13% Similarity=0.049 Sum_probs=29.7
Q ss_pred HHHHHHHHHHHHCCCH---HHHHHHHHHHHHhCCC-CHHHHHHHHHHHHhCCChHHHHHHHHHHHHhCCCCHHH
Q 006120 236 RALKLLGSALFGVGEY---RAAVKALEEAIFIKPD-YADAHCDLASALHAMGEDERAIEVFQKAIDLKPGHVDA 305 (660)
Q Consensus 236 ~~~~~lg~~~~~~g~~---~~A~~~~~~al~~~p~-~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~a 305 (660)
.+.+++|+++.+..+. .+++..++..+...|. .-+.++.+|..+.++|+|++|..+.+.+++..|++..+
T Consensus 41 qt~F~yAw~Lv~S~~~~d~~~GI~LLe~l~~~~~~~~Rd~LYyLAvg~yklgdY~~Ar~y~d~lL~~eP~N~QA 114 (134)
T 3o48_A 41 QSRFNYAWGLIKSTDVNDERLGVKILTDIYKEAESRRRECLYYLTIGCYKLGEYSMAKRYVDTLFEHERNNKQV 114 (134)
T ss_dssp HHHHHHHHHHHHSSCHHHHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHHHHTCHHHHHHHHHHHHTTCTTCHHH
T ss_pred hhHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCcchhHHHHHHHHHHHHHhhhHHHHHHHHHHHHhhCCCCHHH
Confidence 3444444444443322 2344444444444432 23444444444444444444444444444444444433
No 239
>4gns_B Protein CSD3, chitin biosynthesis protein CHS6; FN3, BRCT, tetratricopeptide repeat, cargo adaptor, transpor; HET: EPE; 2.75A {Saccharomyces cerevisiae}
Probab=96.05 E-value=0.032 Score=62.72 Aligned_cols=115 Identities=14% Similarity=0.054 Sum_probs=76.2
Q ss_pred cCC-HHHHHHHHHHHHHHhccCCCchhchHHHHHHHHHHHHH--HC-CCHHHHHHHHHHHHHh--------CCCc-----
Q 006120 172 LGR-YREAKEEYLLALEAAETGGNQWAYLLPQIYVNLGIALE--GE-GMVLSACEYYRESAIL--------CPTH----- 234 (660)
Q Consensus 172 ~g~-~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~la~~~~--~~-g~~~~A~~~~~~al~~--------~p~~----- 234 (660)
.++ ++.|+..+++..+..|.. .+++..+.+.. .. .+--+|+..+.++++. .+.+
T Consensus 261 t~~~~~~a~~~le~L~~~~p~~---------~~~~~~~~i~~~~~~~~~Ev~av~ll~~~l~~~~~~~~~l~~~~~~~~~ 331 (754)
T 4gns_B 261 TPSLVDFTIDYLKGLTKKDPIH---------DIYYKTAMITILDHIETKELDMITILNETLDPLLSLLNDLPPRDADSAR 331 (754)
T ss_dssp CGGGHHHHHHHHHHHHHHCGGG---------HHHHHHHHHHHHTTCGGGHHHHHHHHHHHHHHHHHHHHTCSSCCHHHHH
T ss_pred cccHHHHHHHHHHHHHhhCCch---------hHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHhhhhhhhhccccccccc
Confidence 445 577888888888887752 22222222222 12 2334566666666531 2222
Q ss_pred -----HHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhCCChHHHHHHHHHH
Q 006120 235 -----FRALKLLGSALFGVGEYRAAVKALEEAIFIKPDYADAHCDLASALHAMGEDERAIEVFQKA 295 (660)
Q Consensus 235 -----~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~a 295 (660)
...+...+..+...|+++-|+.+.++|+...|.....|+.|+.+|..+|+++.|+-.++-+
T Consensus 332 ~~~~~~~LL~~Qa~FLl~K~~~elAL~~Ak~AV~~aPseF~tW~~La~vYi~l~d~e~ALLtLNSc 397 (754)
T 4gns_B 332 LMNCMSDLLNIQTNFLLNRGDYELALGVSNTSTELALDSFESWYNLARCHIKKEEYEKALFAINSM 397 (754)
T ss_dssp HHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSSCHHHHHHHHHHHHHTTCHHHHHHHHHHS
T ss_pred ccCcchHHHHHHHHHHhccCcHHHHHHHHHHHHhcCchhhHHHHHHHHHHHHhccHHHHHHHHhcC
Confidence 2345555777778888888888888888888888888888888888888888888665544
No 240
>4gns_B Protein CSD3, chitin biosynthesis protein CHS6; FN3, BRCT, tetratricopeptide repeat, cargo adaptor, transpor; HET: EPE; 2.75A {Saccharomyces cerevisiae}
Probab=96.05 E-value=0.055 Score=60.78 Aligned_cols=123 Identities=11% Similarity=0.009 Sum_probs=88.2
Q ss_pred cCC-HHHHHHHHHHHHHhCCCCHHHHHHHHHHHH---HcCCHHHHHHHHHHHHHHh-------ccCCCc---hhchHHHH
Q 006120 138 HQL-FKEALVSFKRACELQPTDVRPHFRAGNCLY---VLGRYREAKEEYLLALEAA-------ETGGNQ---WAYLLPQI 203 (660)
Q Consensus 138 ~g~-~~~A~~~~~~al~~~p~~~~~~~~la~~~~---~~g~~~~A~~~~~~al~~~-------p~~~~~---~~~~~~~~ 203 (660)
.++ ++.|+..+++..+.+|.... ++..+.+.. ...+--+|+..+.++++.. +..... ........
T Consensus 261 t~~~~~~a~~~le~L~~~~p~~~~-~~~~~~i~~~~~~~~~Ev~av~ll~~~l~~~~~~~~~l~~~~~~~~~~~~~~~~L 339 (754)
T 4gns_B 261 TPSLVDFTIDYLKGLTKKDPIHDI-YYKTAMITILDHIETKELDMITILNETLDPLLSLLNDLPPRDADSARLMNCMSDL 339 (754)
T ss_dssp CGGGHHHHHHHHHHHHHHCGGGHH-HHHHHHHHHHTTCGGGHHHHHHHHHHHHHHHHHHHHTCSSCCHHHHHHHHHHHHH
T ss_pred cccHHHHHHHHHHHHHhhCCchhH-HHHHHHHHHHHHhhhhhHHHHHHHHHHHHHhhhhhhhhcccccccccccCcchHH
Confidence 344 68899999999999886543 333333222 1234557888888777531 100000 00002346
Q ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHH
Q 006120 204 YVNLGIALEGEGMVLSACEYYRESAILCPTHFRALKLLGSALFGVGEYRAAVKALEEA 261 (660)
Q Consensus 204 ~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~a 261 (660)
+...+..+...|+++-|+.+.++|+...|.....|..|+.+|..+|+|+.|+-.++-+
T Consensus 340 L~~Qa~FLl~K~~~elAL~~Ak~AV~~aPseF~tW~~La~vYi~l~d~e~ALLtLNSc 397 (754)
T 4gns_B 340 LNIQTNFLLNRGDYELALGVSNTSTELALDSFESWYNLARCHIKKEEYEKALFAINSM 397 (754)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHCSSCHHHHHHHHHHHHHTTCHHHHHHHHHHS
T ss_pred HHHHHHHHhccCcHHHHHHHHHHHHhcCchhhHHHHHHHHHHHHhccHHHHHHHHhcC
Confidence 6677888899999999999999999999999999999999999999999999877654
No 241
>1tot_A CREB-binding protein; zinc binding, CBP, TAZ2, transferase; NMR {Mus musculus} SCOP: g.44.1.6
Probab=95.69 E-value=0.0012 Score=46.69 Aligned_cols=47 Identities=19% Similarity=0.473 Sum_probs=36.5
Q ss_pred CCCccccccccccccccccc-cccccccccccccCCCCCCCCccccchhhccCChh
Q 006120 588 HGRHVCSVCRYPIIGSRFKE-MKSHFSLCSQCYSEGKVPPTFKQDEYKFKEYGSES 642 (660)
Q Consensus 588 ~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 642 (660)
|-..+|..|.-+ ||.|||= +-..|.||..||+.|+= +-.|.+++-++
T Consensus 4 ~~~~~Cd~C~~~-ig~R~~C~~C~dyDLC~~C~~~~~H-------~H~m~~~~~~l 51 (52)
T 1tot_A 4 RFVYTCNECKHH-VETRWHCTVCEDYDLCINCYNTKSH-------THKMVKWGLGL 51 (52)
T ss_dssp SSCEEETTTTEE-ESSEEEESSSSSCEECHHHHHHHCC-------CSSEEEECSSC
T ss_pred cCEEECCCCCCC-CcceEEcCCCCCchhHHHHHhCCCC-------CCceEEecCCC
Confidence 346899999999 5999995 44589999999999872 45666666554
No 242
>4b4t_P 26S proteasome regulatory subunit RPN5; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=95.44 E-value=1.9 Score=45.59 Aligned_cols=195 Identities=9% Similarity=-0.041 Sum_probs=116.6
Q ss_pred HHHHHHHHHHHHHHhhc---cCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHH---H-HcCC
Q 006120 102 AVFVKELGVLRNRADGA---RSREEAFDGHMAIGRVLYEHQLFKEALVSFKRACELQPTDVRPHFRAGNCL---Y-VLGR 174 (660)
Q Consensus 102 g~~~~Al~~l~~a~~~~---~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~---~-~~g~ 174 (660)
+++..|++.+....+.. .+......+...+...+...++++...+.+.-..........+...+.... . ....
T Consensus 30 ~~~~~a~e~ll~lEK~~r~~~d~~s~~r~l~~iv~l~~~~~~~~~l~e~i~~Lskkr~qlk~ai~~~V~~~~~~l~~~~~ 109 (445)
T 4b4t_P 30 NDCNSALDQLLVLEKKTRQASDLASSKEVLAKIVDLLASRNKWDDLNEQLTLLSKKHGQLKLSIQYMIQKVMEYLKSSKS 109 (445)
T ss_dssp HHHHHHHHHHHHHHHHHSSSCSTTTCHHHHHHHHHHHHHHSCHHHHHHHHHHHHTTTTTSHHHHHHHHHHHHHHHHHHCT
T ss_pred CCHHHHHHHHHHHHHHhhhccchhhHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHhcCCc
Confidence 67888888776555443 344444577888889999999999888877655444333333322222211 1 1222
Q ss_pred HHHHHHHHHHHHHHhccCCC--ch-hchHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC--CC----cHHHHHHHHHHH
Q 006120 175 YREAKEEYLLALEAAETGGN--QW-AYLLPQIYVNLGIALEGEGMVLSACEYYRESAILC--PT----HFRALKLLGSAL 245 (660)
Q Consensus 175 ~~~A~~~~~~al~~~p~~~~--~~-~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~--p~----~~~~~~~lg~~~ 245 (660)
.+. ......+........ .+ ....+.+...|+.++...|++.+|...+.....-. .. -.+.+.....++
T Consensus 110 ~d~--~~~~~~i~~l~~vte~kiflE~erarl~~~La~i~e~~g~~~eA~~iL~~l~~Et~~~~~~~~kve~~l~q~rl~ 187 (445)
T 4b4t_P 110 LDL--NTRISVIETIRVVTENKIFVEVERARVTKDLVEIKKEEGKIDEAADILCELQVETYGSMEMSEKIQFILEQMELS 187 (445)
T ss_dssp THH--HHHHHHHHCCSSSSSCCCCCCHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHCSSSCHHHHHHHHHHHHHHH
T ss_pred hhH--HHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHH
Confidence 221 111222222111111 00 01155677788889999999999988888865321 11 145677778888
Q ss_pred HHCCCHHHHHHHHHHHHH---hCCCC----HHHHHHHHHHHHhCCChHHHHHHHHHHHHh
Q 006120 246 FGVGEYRAAVKALEEAIF---IKPDY----ADAHCDLASALHAMGEDERAIEVFQKAIDL 298 (660)
Q Consensus 246 ~~~g~~~~A~~~~~~al~---~~p~~----~~~~~~la~~~~~~g~~~~A~~~~~~al~~ 298 (660)
...+++..|...++++.. ..+.. ...+...|.++...++|.+|..+|..++..
T Consensus 188 l~~~d~~~a~~~~~ki~~~~~~~~~~~~lk~~~~~~~~~~~~~e~~y~~a~~~y~e~~~~ 247 (445)
T 4b4t_P 188 ILKGDYSQATVLSRKILKKTFKNPKYESLKLEYYNLLVKISLHKREYLEVAQYLQEIYQT 247 (445)
T ss_dssp HHHTCHHHHHHHHHHHHHHHHHSSCCHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHH
T ss_pred HHCCCHHHHHHHHHHHHHhhcccCCcHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHhc
Confidence 888888888888887642 12333 234566777888888888888887777653
No 243
>3mkq_A Coatomer beta'-subunit; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2ynp_A
Probab=95.39 E-value=0.29 Score=55.91 Aligned_cols=76 Identities=16% Similarity=0.163 Sum_probs=40.4
Q ss_pred HHCCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh--------CCCCHHHHHHHHHHHHhCC
Q 006120 212 EGEGMVLSACEYYRESAILCPTHFRALKLLGSALFGVGEYRAAVKALEEAIFI--------KPDYADAHCDLASALHAMG 283 (660)
Q Consensus 212 ~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~--------~p~~~~~~~~la~~~~~~g 283 (660)
...|++++|.+..+. .++...|..+|..+.+.++++.|+.+|.++-.. ...+...+..++......|
T Consensus 663 l~~~~~~~A~~~~~~-----~~~~~~W~~la~~al~~~~~~~A~~~y~~~~d~~~l~~l~~~~~~~~~~~~~~~~a~~~~ 737 (814)
T 3mkq_A 663 LKVGQLTLARDLLTD-----ESAEMKWRALGDASLQRFNFKLAIEAFTNAHDLESLFLLHSSFNNKEGLVTLAKDAETTG 737 (814)
T ss_dssp HHHTCHHHHHHHHTT-----CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHTCHHHHHHHHHHTTCHHHHHHHHHHHHHTT
T ss_pred hhcCCHHHHHHHHHh-----hCcHhHHHHHHHHHHHcCCHHHHHHHHHHccChhhhHHHHHHcCCHHHHHHHHHHHHHcC
Confidence 455666666665432 245566666666666666666666666654211 1233334444445555555
Q ss_pred ChHHHHHHH
Q 006120 284 EDERAIEVF 292 (660)
Q Consensus 284 ~~~~A~~~~ 292 (660)
++..|...|
T Consensus 738 ~~~~A~~~~ 746 (814)
T 3mkq_A 738 KFNLAFNAY 746 (814)
T ss_dssp CHHHHHHHH
T ss_pred chHHHHHHH
Confidence 555444443
No 244
>3mkq_A Coatomer beta'-subunit; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2ynp_A
Probab=95.04 E-value=0.95 Score=51.52 Aligned_cols=75 Identities=20% Similarity=0.154 Sum_probs=53.2
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhccCCCchhchHHHHHHHHH
Q 006120 129 MAIGRVLYEHQLFKEALVSFKRACELQPTDVRPHFRAGNCLYVLGRYREAKEEYLLALEAAETGGNQWAYLLPQIYVNLG 208 (660)
Q Consensus 129 ~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~la 208 (660)
..+...+...|.+++|+...+ ++...+ ......|++++|.+..+.. + ....|..+|
T Consensus 633 ~~~~~~l~~~~~~~~a~~~~~--------~~~~~f---~~~l~~~~~~~A~~~~~~~-----~--------~~~~W~~la 688 (814)
T 3mkq_A 633 TKIARFLEGQEYYEEALNISP--------DQDQKF---ELALKVGQLTLARDLLTDE-----S--------AEMKWRALG 688 (814)
T ss_dssp HHHHHHHHHTTCHHHHHHHCC--------CHHHHH---HHHHHHTCHHHHHHHHTTC-----C--------CHHHHHHHH
T ss_pred HHHHHHHHhCCChHHheecCC--------Ccchhe---ehhhhcCCHHHHHHHHHhh-----C--------cHhHHHHHH
Confidence 556667777888888776542 232222 3456788998888875321 1 457888999
Q ss_pred HHHHHCCCHHHHHHHHHHH
Q 006120 209 IALEGEGMVLSACEYYRES 227 (660)
Q Consensus 209 ~~~~~~g~~~~A~~~~~~a 227 (660)
..+.+.++++.|+.+|.++
T Consensus 689 ~~al~~~~~~~A~~~y~~~ 707 (814)
T 3mkq_A 689 DASLQRFNFKLAIEAFTNA 707 (814)
T ss_dssp HHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHcCCHHHHHHHHHHc
Confidence 9999999999999999886
No 245
>3kae_A CDC27, possible protein of nuclear scaffold; tetratricopeptide repeat protein, protein binding; 2.30A {Encephalitozoon cuniculi}
Probab=95.03 E-value=1.8 Score=38.42 Aligned_cols=106 Identities=15% Similarity=0.029 Sum_probs=79.9
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH--HhccCCCc--------h
Q 006120 127 GHMAIGRVLYEHQLFKEALVSFKRACELQPTDVRPHFRAGNCLYVLGRYREAKEEYLLALE--AAETGGNQ--------W 196 (660)
Q Consensus 127 ~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~--~~p~~~~~--------~ 196 (660)
-.+.++..++-.|.|..|+-.+.. -+...+.+.-+.||....+|..|+..++..+. .+.+.... .
T Consensus 35 Y~lL~~I~LyyngEY~R~Lf~L~~-----lNT~Ts~YYk~LCy~klKdYkkA~~~le~il~~kvd~d~~~d~~~~~ffvd 109 (242)
T 3kae_A 35 YRMLMSIVLYLNGEYTRALFHLHK-----LNTCTSKYYESLCYKKKKDYKKAIKSLESILEGKVERDPDVDARIQEMFVD 109 (242)
T ss_dssp THHHHHHHHHHTTCHHHHHHHHHT-----CCBHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCSBCCCCCCHHHHTTSCC
T ss_pred HHhhhhhhhhhcchHhHHHHHHHh-----cchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccCcccccccceeeec
Confidence 346678889999999998876643 45678888889999999999999999999993 32211000 0
Q ss_pred hchHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCcHHH
Q 006120 197 AYLLPQIYVNLGIALEGEGMVLSACEYYRESAILCPTHFRA 237 (660)
Q Consensus 197 ~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~ 237 (660)
.......+..+|.++.+.|+.++|+.++.......|-.+.+
T Consensus 110 ~~DkEfFy~l~a~lltq~g~r~EaI~y~~~Sf~~~~lf~~v 150 (242)
T 3kae_A 110 PGDEEFFESLLGDLCTLSGYREEGIGHYVRSFGKSFLFSPV 150 (242)
T ss_dssp TTCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCCHHHH
T ss_pred cchHHHHHHHHHHHHHHhcCHHHhhhHhhhhcCCccccchH
Confidence 00145677888999999999999999999998887765443
No 246
>4b4t_P 26S proteasome regulatory subunit RPN5; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=94.85 E-value=2 Score=45.29 Aligned_cols=104 Identities=14% Similarity=-0.071 Sum_probs=80.8
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhccCCCchhchHHHHHHHHHHHHHHCCCHHHHHHHHHHHHH---hCCCc-
Q 006120 159 VRPHFRAGNCLYVLGRYREAKEEYLLALEAAETGGNQWAYLLPQIYVNLGIALEGEGMVLSACEYYRESAI---LCPTH- 234 (660)
Q Consensus 159 ~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~---~~p~~- 234 (660)
+.....|+.++...|++.+|...+.....-.-..-+.. ....++.....++...+++.+|...++++.. ..+..
T Consensus 137 arl~~~La~i~e~~g~~~eA~~iL~~l~~Et~~~~~~~--~kve~~l~q~rl~l~~~d~~~a~~~~~ki~~~~~~~~~~~ 214 (445)
T 4b4t_P 137 ARVTKDLVEIKKEEGKIDEAADILCELQVETYGSMEMS--EKIQFILEQMELSILKGDYSQATVLSRKILKKTFKNPKYE 214 (445)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHCSSSCHH--HHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHSSCCH
T ss_pred HHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHhcccHH--HHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhhcccCCcH
Confidence 45667899999999999999999998875432222221 1678888899999999999999999998743 23333
Q ss_pred ---HHHHHHHHHHHHHCCCHHHHHHHHHHHHHh
Q 006120 235 ---FRALKLLGSALFGVGEYRAAVKALEEAIFI 264 (660)
Q Consensus 235 ---~~~~~~lg~~~~~~g~~~~A~~~~~~al~~ 264 (660)
...+...|.++...++|.+|..+|.+++..
T Consensus 215 ~lk~~~~~~~~~~~~~e~~y~~a~~~y~e~~~~ 247 (445)
T 4b4t_P 215 SLKLEYYNLLVKISLHKREYLEVAQYLQEIYQT 247 (445)
T ss_dssp HHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHhc
Confidence 345677889999999999999999998765
No 247
>2ff4_A Probable regulatory protein EMBR; winged-helix, tetratricopeptide repeat, beta-sandwich, trans; HET: DNA TPO; 1.90A {Mycobacterium tuberculosis} SCOP: a.4.6.1 a.118.8.3 b.26.1.2 PDB: 2fez_A*
Probab=94.79 E-value=0.74 Score=47.72 Aligned_cols=124 Identities=16% Similarity=0.029 Sum_probs=81.4
Q ss_pred HHHHHHHHCCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHCCCHHHH-HHHHHHHHHhCCCCHHHHHHHHHHHHhCCC
Q 006120 206 NLGIALEGEGMVLSACEYYRESAILCPTHFRALKLLGSALFGVGEYRAA-VKALEEAIFIKPDYADAHCDLASALHAMGE 284 (660)
Q Consensus 206 ~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A-~~~~~~al~~~p~~~~~~~~la~~~~~~g~ 284 (660)
..|......|+.+.|...+++++.+....+-. ... ...+-.+ ...+++. ...+...++..+...|+
T Consensus 120 ~~~~~~~~~~~~~~a~~~l~~Al~L~rG~~L~--~~~-----~~~w~~~~r~~l~~~------~~~a~~~~~~~~l~~g~ 186 (388)
T 2ff4_A 120 TAGVHAAAAGRFEQASRHLSAALREWRGPVLD--DLR-----DFQFVEPFATALVED------KVLAHTAKAEAEIACGR 186 (388)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHTTCCSSTTG--GGT-----TSTTHHHHHHHHHHH------HHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHhCCCHHHHHHHHHHHHHhcCCCCCC--CCC-----chhHHHHHHHHHHHH------HHHHHHHHHHHHHHCCC
Confidence 33444455678888888888888775332100 000 0111111 1111111 12345567888889999
Q ss_pred hHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHc-------ccCChhHHHHH
Q 006120 285 DERAIEVFQKAIDLKPGHVDALYNLGGLYMDLGAGETEEAKKALKEALK-------MTNRVELHDAV 344 (660)
Q Consensus 285 ~~~A~~~~~~al~~~p~~~~a~~~La~~~~~~~~g~~~eA~~~~~~al~-------l~p~~~~~~~~ 344 (660)
+.+|+..++.++..+|-+-.++..+..++... |+..+|++.|+++-+ +.|..+.....
T Consensus 187 ~~~a~~~l~~~~~~~P~~E~~~~~lm~al~~~--Gr~~~Al~~y~~~r~~L~~eLG~~P~~~l~~l~ 251 (388)
T 2ff4_A 187 ASAVIAELEALTFEHPYREPLWTQLITAYYLS--DRQSDALGAYRRVKTTLADDLGIDPGPTLRALN 251 (388)
T ss_dssp HHHHHHHHHHHHHHSTTCHHHHHHHHHHHHTT--TCHHHHHHHHHHHHHHHHHHHSCCCCHHHHHHH
T ss_pred HHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHc--CCHHHHHHHHHHHHHHHHHHhCCCCCHHHHHHH
Confidence 99999999999999999999999999999988 999999999888644 45665554433
No 248
>1zbp_A Hypothetical protein VPA1032; alpha-beta protein, structural genomics, PSI, protein struct initiative; 2.40A {Vibrio parahaemolyticus} SCOP: e.61.1.1
Probab=94.76 E-value=0.62 Score=44.97 Aligned_cols=58 Identities=16% Similarity=0.171 Sum_probs=42.9
Q ss_pred HHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhcc
Q 006120 134 VLYEHQLFKEALVSFKRACELQPTDVRPHFRAGNCLYVLGRYREAKEEYLLALEAAET 191 (660)
Q Consensus 134 ~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~ 191 (660)
..++.|+.++|+......++.+|.++.....+..++.-.|+++.|.+-++.+.+++|.
T Consensus 6 ~ll~~g~L~~al~~~~~~VR~~P~da~~R~~LfqLLcv~G~w~RA~~QL~~~a~l~p~ 63 (273)
T 1zbp_A 6 NALSEGQLQQALELLIEAIKASPKDASLRSSFIELLCIDGDFERADEQLMQSIKLFPE 63 (273)
T ss_dssp HHTTTTCHHHHHHHHHHHHHTCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCGG
T ss_pred HHHhCCCHHHHHHHHHHHHHhCCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCch
Confidence 3456677777777777777777777777777777777777777777777777777776
No 249
>1ya0_A SMG-7 transcript variant 2; alpha-helical repeat, tetratricopetide repeat (TPR), 14-3-3, signaling protein; 2.55A {Homo sapiens} SCOP: a.118.8.1
Probab=94.08 E-value=0.27 Score=52.65 Aligned_cols=81 Identities=22% Similarity=0.233 Sum_probs=69.8
Q ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHH
Q 006120 201 PQIYVNLGIALEGEGMVLSACEYYRESAILCPTHFRALKLLGSALFGVGEYRAAVKALEEAIFIKPDYADAHCDLASALH 280 (660)
Q Consensus 201 ~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~ 280 (660)
...+..+|.+......+..|..+|.+|..+.|++...++.||.+....|+.-+|+-+|.+++......+.+..|+..++.
T Consensus 152 hr~l~~LGDL~RY~~~~~~A~~~Y~~A~~~~P~~G~~~nqLavla~~~~~~l~a~y~y~rsl~~~~Pf~~a~~nL~~~f~ 231 (497)
T 1ya0_A 152 QHCLVHLGDIARYRNQTSQAESYYRHAAQLVPSNGQPYNQLAILASSKGDHLTTIFYYCRSIAVKFPFPAASTNLQKALS 231 (497)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTBSHHHHHHHHHHHHTTCHHHHHHHHHHHHSSSBCCHHHHHHHHHHHH
T ss_pred HHHHHHcccHHHHHHHHHHHHHHHHHHHHhCCCCCchHHHHHHHHhcccccHHHHHHHHHHHhcCCCChhHHHHHHHHHH
Confidence 35677888888888889999999999999999999999999999999999999999999998887778888888887775
Q ss_pred h
Q 006120 281 A 281 (660)
Q Consensus 281 ~ 281 (660)
.
T Consensus 232 ~ 232 (497)
T 1ya0_A 232 K 232 (497)
T ss_dssp H
T ss_pred H
Confidence 4
No 250
>4b4t_R RPN7, 26S proteasome regulatory subunit RPN7; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=93.95 E-value=0.35 Score=50.98 Aligned_cols=103 Identities=11% Similarity=0.014 Sum_probs=67.3
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC---CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhccCCCchhchHHH
Q 006120 126 DGHMAIGRVLYEHQLFKEALVSFKRACELQP---TDVRPHFRAGNCLYVLGRYREAKEEYLLALEAAETGGNQWAYLLPQ 202 (660)
Q Consensus 126 ~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p---~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~ 202 (660)
.++..+|..+...|++++|.+.|.++..... ...+.+..+.+++...+++..+..++.++.......++... ...
T Consensus 132 ~~~~~la~~~~~~Gd~~~A~~~~~~~~~~~~~~~~kid~~l~~irl~l~~~d~~~~~~~~~ka~~~~~~~~d~~~--~~~ 209 (429)
T 4b4t_R 132 QAWINLGEYYAQIGDKDNAEKTLGKSLSKAISTGAKIDVMLTIARLGFFYNDQLYVKEKLEAVNSMIEKGGDWER--RNR 209 (429)
T ss_dssp SCCHHHHHHHHHHCCCTTHHHHHHHHHHHHTCCCSHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTCCCTHH--HHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHhhhcCCCHHH--HHH
Confidence 4567778888888888888888877776532 23566777777777778888887777777666544433222 334
Q ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHh
Q 006120 203 IYVNLGIALEGEGMVLSACEYYRESAIL 230 (660)
Q Consensus 203 ~~~~la~~~~~~g~~~~A~~~~~~al~~ 230 (660)
.....|.++...++|.+|..+|..++..
T Consensus 210 lk~~~gl~~l~~r~f~~Aa~~f~e~~~t 237 (429)
T 4b4t_R 210 YKTYYGIHCLAVRNFKEAAKLLVDSLAT 237 (429)
T ss_dssp HHHHHHHGGGGTSCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhChHHHHHHHHHHHhcc
Confidence 4455566666666777766666665543
No 251
>1ya0_A SMG-7 transcript variant 2; alpha-helical repeat, tetratricopetide repeat (TPR), 14-3-3, signaling protein; 2.55A {Homo sapiens} SCOP: a.118.8.1
Probab=93.89 E-value=0.27 Score=52.61 Aligned_cols=80 Identities=19% Similarity=0.092 Sum_probs=72.5
Q ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhCCChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHh
Q 006120 237 ALKLLGSALFGVGEYRAAVKALEEAIFIKPDYADAHCDLASALHAMGEDERAIEVFQKAIDLKPGHVDALYNLGGLYMDL 316 (660)
Q Consensus 237 ~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~La~~~~~~ 316 (660)
.+..||.+......+..|..+|.+|+.+.|++...++.||.+....|+.-+|+-+|-+++......+.+..+|..++...
T Consensus 154 ~l~~LGDL~RY~~~~~~A~~~Y~~A~~~~P~~G~~~nqLavla~~~~~~l~a~y~y~rsl~~~~Pf~~a~~nL~~~f~~~ 233 (497)
T 1ya0_A 154 CLVHLGDIARYRNQTSQAESYYRHAAQLVPSNGQPYNQLAILASSKGDHLTTIFYYCRSIAVKFPFPAASTNLQKALSKA 233 (497)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTBSHHHHHHHHHHHHTTCHHHHHHHHHHHHSSSBCCHHHHHHHHHHHHHH
T ss_pred HHHHcccHHHHHHHHHHHHHHHHHHHHhCCCCCchHHHHHHHHhcccccHHHHHHHHHHHhcCCCChhHHHHHHHHHHHH
Confidence 66788999999999999999999999999999999999999999999999999999999988777899999998888654
No 252
>2ff4_A Probable regulatory protein EMBR; winged-helix, tetratricopeptide repeat, beta-sandwich, trans; HET: DNA TPO; 1.90A {Mycobacterium tuberculosis} SCOP: a.4.6.1 a.118.8.3 b.26.1.2 PDB: 2fez_A*
Probab=93.89 E-value=0.88 Score=47.15 Aligned_cols=63 Identities=17% Similarity=0.180 Sum_probs=57.6
Q ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhCCChHHHHHHHHHHHH
Q 006120 235 FRALKLLGSALFGVGEYRAAVKALEEAIFIKPDYADAHCDLASALHAMGEDERAIEVFQKAID 297 (660)
Q Consensus 235 ~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~ 297 (660)
..+...++..+...|++.+|+..+.+++..+|-+-.+|..+..++...|+..+|+..|+++-+
T Consensus 171 ~~a~~~~~~~~l~~g~~~~a~~~l~~~~~~~P~~E~~~~~lm~al~~~Gr~~~Al~~y~~~r~ 233 (388)
T 2ff4_A 171 VLAHTAKAEAEIACGRASAVIAELEALTFEHPYREPLWTQLITAYYLSDRQSDALGAYRRVKT 233 (388)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 345667888999999999999999999999999999999999999999999999999988754
No 253
>1qsa_A Protein (soluble lytic transglycosylase SLT70); alpha-superhelix, transferase; HET: GOL; 1.65A {Escherichia coli} SCOP: a.118.5.1 d.2.1.6 PDB: 1qte_A* 1sly_A*
Probab=93.66 E-value=6.1 Score=43.43 Aligned_cols=209 Identities=11% Similarity=-0.038 Sum_probs=119.0
Q ss_pred HHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHH------------------HHHHHHHHHcCCHHHHHHHHH
Q 006120 122 EEAFDGHMAIGRVLYEHQLFKEALVSFKRACELQPTDVRPH------------------FRAGNCLYVLGRYREAKEEYL 183 (660)
Q Consensus 122 ~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~------------------~~la~~~~~~g~~~~A~~~~~ 183 (660)
+.........+......|+-.+|....+++.......+... .......+..|+...|.....
T Consensus 99 p~~~~~~c~~~~A~~~~G~~~~a~~~~~~lW~~~~~~p~~c~~l~~~~~~~g~lt~~~~~~R~~~al~~~~~~~a~~l~~ 178 (618)
T 1qsa_A 99 PGTTEAQCNYYYAKWNTGQSEEAWQGAKELWLTGKSQPNACDKLFSVWRASGKQDPLAYLERIRLAMKAGNTGLVTVLAG 178 (618)
T ss_dssp CSSHHHHHHHHHHHHHTTCHHHHHHHHHHHHSCSSCCCTHHHHHHHHHHHTTCSCHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHcCChhHHHHHHHHHHhCCCCCcHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHCCCHHHHHHHHH
Confidence 33445556666778888988888777776665443222211 122233444555555544332
Q ss_pred HH-------------HHHhccCCCchh-----chHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCcHH----HHHHH
Q 006120 184 LA-------------LEAAETGGNQWA-----YLLPQIYVNLGIALEGEGMVLSACEYYRESAILCPTHFR----ALKLL 241 (660)
Q Consensus 184 ~a-------------l~~~p~~~~~~~-----~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~----~~~~l 241 (660)
.+ +..+|....... .........++.......+.+.|...+.+.....+-+.. .+..+
T Consensus 179 ~l~~~~~~~a~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~~~~rlar~d~~~A~~~~~~~~~~~~~~~~~~~~~~~~i 258 (618)
T 1qsa_A 179 QMPADYQTIASAIISLANNPNTVLTFARTTGATDFTRQMAAVAFASVARQDAENARLMIPSLAQAQQLNEDQIQELRDIV 258 (618)
T ss_dssp TCCGGGHHHHHHHHHHHHCGGGHHHHHHHSCCCHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHTTCCHHHHHHHHHHH
T ss_pred hCCHHHHHHHHHHHHHHhChHhHHHHHhccCCChhhHHHHHHHHHHHHhcCHHHHHHHHHhhhhccCCCHHHHHHHHHHH
Confidence 21 111222100000 001112223344444455788888888776554333322 22233
Q ss_pred HHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhCCChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCCCH
Q 006120 242 GSALFGVGEYRAAVKALEEAIFIKPDYADAHCDLASALHAMGEDERAIEVFQKAIDLKPGHVDALYNLGGLYMDLGAGET 321 (660)
Q Consensus 242 g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~La~~~~~~~~g~~ 321 (660)
+.-+...+...++...+.+......++. ....++...+..|+++.|...+++.-...+......+.+|.++..+ |+.
T Consensus 259 a~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~e~~~r~Alr~~d~~~a~~~~~~l~~~~~~~~r~~YW~~ra~~~~--g~~ 335 (618)
T 1qsa_A 259 AWRLMGNDVTDEQAKWRDDAIMRSQSTS-LIERRVRMALGTGDRRGLNTWLARLPMEAKEKDEWRYWQADLLLER--GRE 335 (618)
T ss_dssp HHTSCSTTCCHHHHHHHHHHHHTCCCHH-HHHHHHHHHHHHTCHHHHHHHHHHSCTTGGGSHHHHHHHHHHHHHT--TCH
T ss_pred HHHHHHcCCChHHHHHHHhccccCCChH-HHHHHHHHHHHCCCHHHHHHHHHHccccccccHhHHHHHHHHHHHc--CCH
Confidence 3333444535567777777665444433 3333444455679999999999876554445688899999999998 999
Q ss_pred HHHHHHHHHHHc
Q 006120 322 EEAKKALKEALK 333 (660)
Q Consensus 322 ~eA~~~~~~al~ 333 (660)
++|..+|+++..
T Consensus 336 ~~a~~~~~~~a~ 347 (618)
T 1qsa_A 336 AEAKEILHQLMQ 347 (618)
T ss_dssp HHHHHHHHHHHT
T ss_pred HHHHHHHHHHhc
Confidence 999999999986
No 254
>4b4t_S RPN3, 26S proteasome regulatory subunit RPN3; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=93.30 E-value=1.5 Score=46.72 Aligned_cols=193 Identities=14% Similarity=0.067 Sum_probs=90.4
Q ss_pred HHHHHHcCCHHHHHHHHHHHHH--h---------CCCCHHHHHHHHHHHHHcCCHHHHH----------HHHHHHHHHhc
Q 006120 132 GRVLYEHQLFKEALVSFKRACE--L---------QPTDVRPHFRAGNCLYVLGRYREAK----------EEYLLALEAAE 190 (660)
Q Consensus 132 g~~~~~~g~~~~A~~~~~~al~--~---------~p~~~~~~~~la~~~~~~g~~~~A~----------~~~~~al~~~p 190 (660)
-..++..+++++|..+-...+. . ++-.+.+|+..+.++...|+..... ..+..++....
T Consensus 143 ~i~L~d~k~~~~~~~~~~~~~~~~~l~~~nrrtlD~l~ak~~fY~s~~~e~~~~~~~~~~~~~~~~~ir~~Ll~~~rta~ 222 (523)
T 4b4t_S 143 QLFLWDSKELEQLVEFNRKVVIPNLLCYYNLRSLNLINAKLWFYIYLSHETLARSSEEINSDNQNIILRSTMMKFLKIAS 222 (523)
T ss_dssp ------------------------------------------------------------CHHHHHHHHTHHHHHHHHCC
T ss_pred HHHHhccccHHHHHHHHHHHHHHHHHHHHhHHhHHHHHHHHHHHHHHHHHHhcccccccccccchhhHHHHHHHHHHHHh
Confidence 3445677899999888766551 1 2334677888888888888766532 23333443332
Q ss_pred cCCCchhchHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCc-------HHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Q 006120 191 TGGNQWAYLLPQIYVNLGIALEGEGMVLSACEYYRESAILCPTH-------FRALKLLGSALFGVGEYRAAVKALEEAIF 263 (660)
Q Consensus 191 ~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~-------~~~~~~lg~~~~~~g~~~~A~~~~~~al~ 263 (660)
-..+... .+.++..+-..|...+.++.|..+..++. .|.. ...++.+|.++.-+++|.+|.+++..|+.
T Consensus 223 lr~D~~~--qa~l~nllLRnYL~~~~y~qA~~lvsk~~--fP~~~~sn~q~~rY~YY~GRI~a~q~~Y~eA~~~L~~A~r 298 (523)
T 4b4t_S 223 LKHDNET--KAMLINLILRDFLNNGEVDSASDFISKLE--YPHTDVSSSLEARYFFYLSKINAIQLDYSTANEYIIAAIR 298 (523)
T ss_dssp SCSSSCH--HHHHHHHHHHHHHHSSCSTTHHHHHHHHC--SCTTTSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHTS
T ss_pred cccCcch--hHHHHHHHHHHHHccCcHHHHHHHHhcCc--CCcccCCHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHH
Confidence 2222222 67888889999999999999999999984 3422 44667889999999999999999999999
Q ss_pred hCCCCH-------HHHHHHHHHHHhCCChHHHHHHHHHHHHhCCCC---HHHHHHHHHHHHHhcCCCHHH---HHHHHHH
Q 006120 264 IKPDYA-------DAHCDLASALHAMGEDERAIEVFQKAIDLKPGH---VDALYNLGGLYMDLGAGETEE---AKKALKE 330 (660)
Q Consensus 264 ~~p~~~-------~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~---~~a~~~La~~~~~~~~g~~~e---A~~~~~~ 330 (660)
..|.+. .++-.+..+-+-+|+..+-. +-..+.. ...|..|+.++.. |+..+ ++.-++.
T Consensus 299 kap~~~~a~gfr~~a~K~lI~V~LLlG~iP~r~------lf~q~~l~~~L~pY~~Lv~Avr~---GdL~~F~~~L~~h~~ 369 (523)
T 4b4t_S 299 KAPHNSKSLGFLQQSNKLHCCIQLLMGDIPELS------FFHQSNMQKSLLPYYHLTKAVKL---GDLKKFTSTITKYKQ 369 (523)
T ss_dssp SCSCSSSCSHHHHHHHHHHHHHHHHHTCCCCHH------HHTTTSCHHHHHHHHHHHHHHHH---TCHHHHHHHHHHTHH
T ss_pred hCCcchhhhhHHHHHHHHHHhHHhhcCCCCChH------HhhchhHHHHHHHHHHHHHHHHc---CCHHHHHHHHHHhcc
Confidence 887542 22223333333457654311 1112332 2347777777753 66543 4444444
Q ss_pred HHcccCC
Q 006120 331 ALKMTNR 337 (660)
Q Consensus 331 al~l~p~ 337 (660)
.+.-+..
T Consensus 370 ~F~~Dgt 376 (523)
T 4b4t_S 370 LLLKDDT 376 (523)
T ss_dssp HHHHTTC
T ss_pred eeccCCh
Confidence 4444444
No 255
>1zbp_A Hypothetical protein VPA1032; alpha-beta protein, structural genomics, PSI, protein struct initiative; 2.40A {Vibrio parahaemolyticus} SCOP: e.61.1.1
Probab=92.52 E-value=2.2 Score=41.11 Aligned_cols=119 Identities=18% Similarity=0.152 Sum_probs=81.3
Q ss_pred HHHHCCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhCCChHHHH
Q 006120 210 ALEGEGMVLSACEYYRESAILCPTHFRALKLLGSALFGVGEYRAAVKALEEAIFIKPDYADAHCDLASALHAMGEDERAI 289 (660)
Q Consensus 210 ~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~ 289 (660)
.+.+.|+.++|++.....++.+|.++.....+..++.-.|+++.|.+.++.+.+++|+....-..+-.+. .|+
T Consensus 6 ~ll~~g~L~~al~~~~~~VR~~P~da~~R~~LfqLLcv~G~w~RA~~QL~~~a~l~p~~~~~a~~yr~lI-------~aE 78 (273)
T 1zbp_A 6 NALSEGQLQQALELLIEAIKASPKDASLRSSFIELLCIDGDFERADEQLMQSIKLFPEYLPGASQLRHLV-------KAA 78 (273)
T ss_dssp HHTTTTCHHHHHHHHHHHHHTCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCGGGHHHHHHHHHHH-------HHH
T ss_pred HHHhCCCHHHHHHHHHHHHHhCCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCchhhHHHHHHHHHH-------HHH
Confidence 3567899999999999999999999999999999999999999999999999999998644322221111 111
Q ss_pred HHHHHHHHh--C---CCCHHHHH-HH--HHHHHHhcCCCHHHHHHHHHHHHcccCC
Q 006120 290 EVFQKAIDL--K---PGHVDALY-NL--GGLYMDLGAGETEEAKKALKEALKMTNR 337 (660)
Q Consensus 290 ~~~~~al~~--~---p~~~~a~~-~L--a~~~~~~~~g~~~eA~~~~~~al~l~p~ 337 (660)
..=.+.+.- . +..+..|. .+ +...... |+.++|...-.++++..|.
T Consensus 79 ~~R~~vfaG~~~P~~~g~~~~w~~~ll~Al~~~~~--G~~~~A~~lr~~A~e~ap~ 132 (273)
T 1zbp_A 79 QARKDFAQGAATAKVLGENEELTKSLVSFNLSMVS--QDYEQVSELALQIEELRQE 132 (273)
T ss_dssp HHHHHHTTSCCCEECCCSCHHHHHHHHHHHHHHHH--TCHHHHHHHHHHHHHHCCC
T ss_pred HHHHHHHcCCCCCCCCCCCHHHHHHHHHHHHHhhc--CCHHHHHHHHHHHHhcCcc
Confidence 111111111 1 12222222 22 2233334 9999999999999988765
No 256
>4b4t_R RPN7, 26S proteasome regulatory subunit RPN7; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=91.70 E-value=0.83 Score=48.08 Aligned_cols=103 Identities=14% Similarity=0.075 Sum_probs=79.3
Q ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhccCCCchhchHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCC--Cc-
Q 006120 158 DVRPHFRAGNCLYVLGRYREAKEEYLLALEAAETGGNQWAYLLPQIYVNLGIALEGEGMVLSACEYYRESAILCP--TH- 234 (660)
Q Consensus 158 ~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p--~~- 234 (660)
...++..+|..|...|++++|.+.|.++......... ...++..+..++...+++..+..++.++..... .+
T Consensus 130 ~~~~~~~la~~~~~~Gd~~~A~~~~~~~~~~~~~~~~-----kid~~l~~irl~l~~~d~~~~~~~~~ka~~~~~~~~d~ 204 (429)
T 4b4t_R 130 QAQAWINLGEYYAQIGDKDNAEKTLGKSLSKAISTGA-----KIDVMLTIARLGFFYNDQLYVKEKLEAVNSMIEKGGDW 204 (429)
T ss_dssp CSSCCHHHHHHHHHHCCCTTHHHHHHHHHHHHTCCCS-----HHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTCCCT
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCChHH-----HHHHHHHHHHHHHHhccHHHHHHHHHHHHHhhhcCCCH
Confidence 3457889999999999999999999999887655433 667888888899999999999999999866521 12
Q ss_pred ---HHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC
Q 006120 235 ---FRALKLLGSALFGVGEYRAAVKALEEAIFIK 265 (660)
Q Consensus 235 ---~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~ 265 (660)
.......|.++...++|.+|...|..++.-.
T Consensus 205 ~~~~~lk~~~gl~~l~~r~f~~Aa~~f~e~~~t~ 238 (429)
T 4b4t_R 205 ERRNRYKTYYGIHCLAVRNFKEAAKLLVDSLATF 238 (429)
T ss_dssp HHHHHHHHHHHHGGGGTSCHHHHHHHHHHHHHHS
T ss_pred HHHHHHHHHHHHHHHHhChHHHHHHHHHHHhccC
Confidence 2234445667777888888888888776654
No 257
>3mkq_B Coatomer subunit alpha; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae}
Probab=91.04 E-value=5.6 Score=35.80 Aligned_cols=103 Identities=11% Similarity=-0.062 Sum_probs=65.5
Q ss_pred HHHCCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhCCChHHHHH
Q 006120 211 LEGEGMVLSACEYYRESAILCPTHFRALKLLGSALFGVGEYRAAVKALEEAIFIKPDYADAHCDLASALHAMGEDERAIE 290 (660)
Q Consensus 211 ~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~ 290 (660)
..+.|+++.|.+..++. ++...|..||......|+++-|+.+|+++-. . ..+..+|.-.|+.+.-..
T Consensus 15 AL~lg~l~~A~e~a~~l-----~~~~~Wk~Lg~~AL~~gn~~lAe~cy~~~~D-----~---~~L~~Ly~~tg~~e~L~k 81 (177)
T 3mkq_B 15 ALEYGNLDAALDEAKKL-----NDSITWERLIQEALAQGNASLAEMIYQTQHS-----F---DKLSFLYLVTGDVNKLSK 81 (177)
T ss_dssp HHHTTCHHHHHHHHHHH-----CCHHHHHHHHHHHHHTTCHHHHHHHHHHTTC-----H---HHHHHHHHHHTCHHHHHH
T ss_pred HHhcCCHHHHHHHHHHh-----CCHHHHHHHHHHHHHcCChHHHHHHHHHhCC-----H---HHHHHHHHHhCCHHHHHH
Confidence 36789999999987765 6788999999999999999999999987532 2 223334444555554444
Q ss_pred HHHHHHHhCCCCHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHc
Q 006120 291 VFQKAIDLKPGHVDALYNLGGLYMDLGAGETEEAKKALKEALK 333 (660)
Q Consensus 291 ~~~~al~~~p~~~~a~~~La~~~~~~~~g~~~eA~~~~~~al~ 333 (660)
..+.+.... + +.....++..+ |+++++++.|.+.-+
T Consensus 82 la~iA~~~g-~----~n~af~~~l~l--Gdv~~~i~lL~~~~r 117 (177)
T 3mkq_B 82 MQNIAQTRE-D----FGSMLLNTFYN--NSTKERSSIFAEGGS 117 (177)
T ss_dssp HHHHHHHTT-C----HHHHHHHHHHH--TCHHHHHHHHHHTTC
T ss_pred HHHHHHHCc-c----HHHHHHHHHHc--CCHHHHHHHHHHCCC
Confidence 333333222 1 11122334445 777777777765433
No 258
>3spa_A Mtrpol, DNA-directed RNA polymerase, mitochondrial; single-subunit DNA-dependent RNA polymerase in mitochondria, transferase; 2.50A {Homo sapiens}
Probab=90.72 E-value=2.1 Score=49.34 Aligned_cols=100 Identities=6% Similarity=-0.152 Sum_probs=81.8
Q ss_pred HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh----CCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHH
Q 006120 200 LPQIYVNLGIALEGEGMVLSACEYYRESAIL----CPTHFRALKLLGSALFGVGEYRAAVKALEEAIFIK-PDYADAHCD 274 (660)
Q Consensus 200 ~~~~~~~la~~~~~~g~~~~A~~~~~~al~~----~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~ 274 (660)
.-..+..+-..|.+.|+.++|...|.+..+. ..-+...|+.+...|.+.|+.++|.+.|++..+.. .-+...|..
T Consensus 126 ~~~TynaLIdglcK~G~leeA~~Lf~eM~~m~~kG~~PdvvTYNtLI~Glck~G~~~eA~~Lf~eM~~~G~~PDvvTYnt 205 (1134)
T 3spa_A 126 QQQRLLAFFKCCLLTDQLPLAHHLLVVHHGQRQKRKLLTLDMYNAVMLGWARQGAFKELVYVLFMVKDAGLTPDLLSYAA 205 (1134)
T ss_dssp HHHHHHHHHHHHHHHTCHHHHHHHHHHHHHSHHHHTTCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTTCCCCHHHHHH
T ss_pred HHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHhhcCCCCCHhHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCcHHHHHH
Confidence 5567888899999999999999999775432 23457889999999999999999999999988763 235778888
Q ss_pred HHHHHHhCCCh-HHHHHHHHHHHHhC
Q 006120 275 LASALHAMGED-ERAIEVFQKAIDLK 299 (660)
Q Consensus 275 la~~~~~~g~~-~~A~~~~~~al~~~ 299 (660)
+-.++.+.|+. ++|...+++..+..
T Consensus 206 LI~glcK~G~~~e~A~~Ll~EM~~kG 231 (1134)
T 3spa_A 206 ALQCMGRQDQDAGTIERCLEQMSQEG 231 (1134)
T ss_dssp HHHHHHHHTCCHHHHHHHHHHHHHHT
T ss_pred HHHHHHhCCCcHHHHHHHHHHHHHcC
Confidence 88889998885 78889999887763
No 259
>3kae_A CDC27, possible protein of nuclear scaffold; tetratricopeptide repeat protein, protein binding; 2.30A {Encephalitozoon cuniculi}
Probab=90.66 E-value=8.7 Score=34.08 Aligned_cols=182 Identities=13% Similarity=0.063 Sum_probs=115.0
Q ss_pred HcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhccCCCchhchHHHHHHHHHHHHHHCCC
Q 006120 137 EHQLFKEALVSFKRACELQPTDVRPHFRAGNCLYVLGRYREAKEEYLLALEAAETGGNQWAYLLPQIYVNLGIALEGEGM 216 (660)
Q Consensus 137 ~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~la~~~~~~g~ 216 (660)
+-.+|+.++-.-.- +.|..++....++..++-.|+|..++-.+.. ++ ...+.+.-+.++....+
T Consensus 14 kY~dYdt~~fLsa~---L~~~~~eY~lL~~I~LyyngEY~R~Lf~L~~---lN----------T~Ts~YYk~LCy~klKd 77 (242)
T 3kae_A 14 RYRDYETAIFLAAC---LLPCKPEYRMLMSIVLYLNGEYTRALFHLHK---LN----------TCTSKYYESLCYKKKKD 77 (242)
T ss_dssp HTTCHHHHHHHHHH---HC----CTHHHHHHHHHHTTCHHHHHHHHHT---CC----------BHHHHHHHHHHHHHTTC
T ss_pred hcccccHHHHHHHH---HccCChHHHhhhhhhhhhcchHhHHHHHHHh---cc----------hHHHHHHHHHHHHHHHH
Confidence 44567766543322 2344556777889999999999998876532 11 34566667889999999
Q ss_pred HHHHHHHHHHHHH--h---------------CCCcHH-HHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHH-
Q 006120 217 VLSACEYYRESAI--L---------------CPTHFR-ALKLLGSALFGVGEYRAAVKALEEAIFIKPDYADAHCDLAS- 277 (660)
Q Consensus 217 ~~~A~~~~~~al~--~---------------~p~~~~-~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~- 277 (660)
|.+|+..++..++ . +|.+.+ .+..+|.++.+.|+.++|+.++.......|-.+.+-+.+-.
T Consensus 78 YkkA~~~le~il~~kvd~d~~~d~~~~~ffvd~~DkEfFy~l~a~lltq~g~r~EaI~y~~~Sf~~~~lf~~vEnliyeN 157 (242)
T 3kae_A 78 YKKAIKSLESILEGKVERDPDVDARIQEMFVDPGDEEFFESLLGDLCTLSGYREEGIGHYVRSFGKSFLFSPVENLLLEN 157 (242)
T ss_dssp HHHHHHHHHHHHTTCSBCCCCCCHHHHTTSCCTTCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCCHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHhcccccCcccccccceeeeccchHHHHHHHHHHHHHHhcCHHHhhhHhhhhcCCccccchHHHHHhhc
Confidence 9999999999983 2 233333 56778999999999999999999999887754333211100
Q ss_pred ----------HHHhCCChHHHH---------------HHHHHHHHhCCCCHH-HHHHHHHHHHHhcCCCHHHHHHHHHHH
Q 006120 278 ----------ALHAMGEDERAI---------------EVFQKAIDLKPGHVD-ALYNLGGLYMDLGAGETEEAKKALKEA 331 (660)
Q Consensus 278 ----------~~~~~g~~~~A~---------------~~~~~al~~~p~~~~-a~~~La~~~~~~~~g~~~eA~~~~~~a 331 (660)
+.. .|+-.--. ...++-...-|.... ....-+.-|..+ |-.++...+|...
T Consensus 158 ~vp~~~d~~~i~~-~~~~~i~~~y~~d~~~lHe~~s~~~ikkY~n~iPGiGSY~va~aa~~yf~l--g~~d~s~~lf~~l 234 (242)
T 3kae_A 158 KVPQKRDKENVRQ-TGRRGIEEEYVSDSIEFHESLSPSLVKKYMEHVPGIGSYFISNAARRYFNL--GMNDKSKACFELV 234 (242)
T ss_dssp CCCCCC------------CHHHHHHHHHHHHHHHCCHHHHHHHHTSTTTHHHHHHHHHHHHHHHT--TCHHHHHHHHHHH
T ss_pred CCCcccchHHHHh-hhhccchhhhhhhHHHHHHhccHHHHHHHHHhCCCchhHHHHHHHHHHHhc--ccchhHHHHHHHH
Confidence 000 01100001 122222333454433 233456677888 9999999999988
Q ss_pred HcccCC
Q 006120 332 LKMTNR 337 (660)
Q Consensus 332 l~l~p~ 337 (660)
-+.+|.
T Consensus 235 R~kDP~ 240 (242)
T 3kae_A 235 RRKDPM 240 (242)
T ss_dssp HHHSTT
T ss_pred HhcCCC
Confidence 887774
No 260
>3mkq_B Coatomer subunit alpha; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae}
Probab=90.10 E-value=6.3 Score=35.44 Aligned_cols=46 Identities=20% Similarity=0.012 Sum_probs=29.2
Q ss_pred HHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHH
Q 006120 135 LYEHQLFKEALVSFKRACELQPTDVRPHFRAGNCLYVLGRYREAKEEYLLA 185 (660)
Q Consensus 135 ~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~a 185 (660)
..+.|+++.|.+..+.. ++...|..+|......|+++-|..+|.++
T Consensus 15 AL~lg~l~~A~e~a~~l-----~~~~~Wk~Lg~~AL~~gn~~lAe~cy~~~ 60 (177)
T 3mkq_B 15 ALEYGNLDAALDEAKKL-----NDSITWERLIQEALAQGNASLAEMIYQTQ 60 (177)
T ss_dssp HHHTTCHHHHHHHHHHH-----CCHHHHHHHHHHHHHTTCHHHHHHHHHHT
T ss_pred HHhcCCHHHHHHHHHHh-----CCHHHHHHHHHHHHHcCChHHHHHHHHHh
Confidence 34556666666665543 45666777777777777777666666554
No 261
>4b4t_S RPN3, 26S proteasome regulatory subunit RPN3; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=90.03 E-value=0.37 Score=51.27 Aligned_cols=134 Identities=11% Similarity=-0.020 Sum_probs=53.4
Q ss_pred HHHHHcCCHHHHHHHHHHHHH--Hhc-cCCCchhchHHHHHHHHHHHHHHCCCHHHHH----------HHHHHHHHh---
Q 006120 167 NCLYVLGRYREAKEEYLLALE--AAE-TGGNQWAYLLPQIYVNLGIALEGEGMVLSAC----------EYYRESAIL--- 230 (660)
Q Consensus 167 ~~~~~~g~~~~A~~~~~~al~--~~p-~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~----------~~~~~al~~--- 230 (660)
..+...+++++|.++-...+. .-. .+......+.+.+|+..+.++...|+..... ..+..+++.
T Consensus 144 i~L~d~k~~~~~~~~~~~~~~~~~l~~~nrrtlD~l~ak~~fY~s~~~e~~~~~~~~~~~~~~~~~ir~~Ll~~~rta~l 223 (523)
T 4b4t_S 144 LFLWDSKELEQLVEFNRKVVIPNLLCYYNLRSLNLINAKLWFYIYLSHETLARSSEEINSDNQNIILRSTMMKFLKIASL 223 (523)
T ss_dssp -----------------------------------------------------------CHHHHHHHHTHHHHHHHHCCS
T ss_pred HHHhccccHHHHHHHHHHHHHHHHHHHHhHHhHHHHHHHHHHHHHHHHHHhcccccccccccchhhHHHHHHHHHHHHhc
Confidence 345667889998888776652 111 1111112236777888888887777765532 122222222
Q ss_pred --CCC-cHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCC-------HHHHHHHHHHHHhCCChHHHHHHHHHHHHhCC
Q 006120 231 --CPT-HFRALKLLGSALFGVGEYRAAVKALEEAIFIKPDY-------ADAHCDLASALHAMGEDERAIEVFQKAIDLKP 300 (660)
Q Consensus 231 --~p~-~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~-------~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p 300 (660)
++. .+..++.+-..|...+.+++|..+..++. .|.. ...++.+|.++..+++|.+|..++..|+...|
T Consensus 224 r~D~~~qa~l~nllLRnYL~~~~y~qA~~lvsk~~--fP~~~~sn~q~~rY~YY~GRI~a~q~~Y~eA~~~L~~A~rkap 301 (523)
T 4b4t_S 224 KHDNETKAMLINLILRDFLNNGEVDSASDFISKLE--YPHTDVSSSLEARYFFYLSKINAIQLDYSTANEYIIAAIRKAP 301 (523)
T ss_dssp CSSSCHHHHHHHHHHHHHHHSSCSTTHHHHHHHHC--SCTTTSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHTSSCS
T ss_pred ccCcchhHHHHHHHHHHHHccCcHHHHHHHHhcCc--CCcccCCHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCC
Confidence 222 25567777888888888888888888874 3322 44566778888888888888888888888776
Q ss_pred CC
Q 006120 301 GH 302 (660)
Q Consensus 301 ~~ 302 (660)
.+
T Consensus 302 ~~ 303 (523)
T 4b4t_S 302 HN 303 (523)
T ss_dssp CS
T ss_pred cc
Confidence 54
No 262
>3spa_A Mtrpol, DNA-directed RNA polymerase, mitochondrial; single-subunit DNA-dependent RNA polymerase in mitochondria, transferase; 2.50A {Homo sapiens}
Probab=89.98 E-value=2.8 Score=48.36 Aligned_cols=99 Identities=9% Similarity=-0.112 Sum_probs=82.5
Q ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHh----CCCCHHHHHHHHHHHHhCCChHHHHHHHHHHHHhC-CCCHHHHHHH
Q 006120 235 FRALKLLGSALFGVGEYRAAVKALEEAIFI----KPDYADAHCDLASALHAMGEDERAIEVFQKAIDLK-PGHVDALYNL 309 (660)
Q Consensus 235 ~~~~~~lg~~~~~~g~~~~A~~~~~~al~~----~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~-p~~~~a~~~L 309 (660)
...+..+-..|.+.|+.++|...+.+..++ -.-+...|+.|-..|.+.|+.++|...|++..+.. .-+...|..+
T Consensus 127 ~~TynaLIdglcK~G~leeA~~Lf~eM~~m~~kG~~PdvvTYNtLI~Glck~G~~~eA~~Lf~eM~~~G~~PDvvTYntL 206 (1134)
T 3spa_A 127 QQRLLAFFKCCLLTDQLPLAHHLLVVHHGQRQKRKLLTLDMYNAVMLGWARQGAFKELVYVLFMVKDAGLTPDLLSYAAA 206 (1134)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHHHHHHSHHHHTTCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTTCCCCHHHHHHH
T ss_pred HHHHHHHHHHHHhCCCHHHHHHHHHHHHHHhhcCCCCCHhHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCcHHHHHHH
Confidence 457888999999999999999999775432 23368899999999999999999999999998763 2357788888
Q ss_pred HHHHHHhcCCC-HHHHHHHHHHHHccc
Q 006120 310 GGLYMDLGAGE-TEEAKKALKEALKMT 335 (660)
Q Consensus 310 a~~~~~~~~g~-~~eA~~~~~~al~l~ 335 (660)
...+.+. |+ .++|.+.+++..+..
T Consensus 207 I~glcK~--G~~~e~A~~Ll~EM~~kG 231 (1134)
T 3spa_A 207 LQCMGRQ--DQDAGTIERCLEQMSQEG 231 (1134)
T ss_dssp HHHHHHH--TCCHHHHHHHHHHHHHHT
T ss_pred HHHHHhC--CCcHHHHHHHHHHHHHcC
Confidence 8899988 77 578999999988764
No 263
>1qsa_A Protein (soluble lytic transglycosylase SLT70); alpha-superhelix, transferase; HET: GOL; 1.65A {Escherichia coli} SCOP: a.118.5.1 d.2.1.6 PDB: 1qte_A* 1sly_A*
Probab=88.74 E-value=31 Score=37.75 Aligned_cols=55 Identities=11% Similarity=-0.036 Sum_probs=41.0
Q ss_pred HHHHHHHHhCCChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCCCHHHHHHHHHHH
Q 006120 273 CDLASALHAMGEDERAIEVFQKAIDLKPGHVDALYNLGGLYMDLGAGETEEAKKALKEA 331 (660)
Q Consensus 273 ~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~La~~~~~~~~g~~~eA~~~~~~a 331 (660)
...+..+...|....|...+...+... +..-...++.+.... |.+..++....+.
T Consensus 385 ~~r~~~L~~~g~~~~a~~ew~~~~~~~--~~~~~~~la~~a~~~--~~~~~~v~~~~~~ 439 (618)
T 1qsa_A 385 MARVRELMYWNLDNTARSEWANLVKSK--SKTEQAQLARYAFNN--QWWDLSVQATIAG 439 (618)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHTTC--CHHHHHHHHHHHHHT--TCHHHHHHHHHHT
T ss_pred HHHHHHHHHCCChhhHHHHHHHHHhcC--CHHHHHHHHHHHHHC--CChHHHHHHHHHH
Confidence 455677889999999999988877642 345556777777777 8999888766554
No 264
>4fhn_B Nucleoporin NUP120; protein complex,structural protein,nuclear pore complex,mRNA transport,protein transport, WD repeat; 6.99A {Schizosaccharomyces pombe 972h-}
Probab=88.31 E-value=4.2 Score=48.53 Aligned_cols=125 Identities=14% Similarity=0.055 Sum_probs=74.1
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhccCCCch--------------
Q 006120 131 IGRVLYEHQLFKEALVSFKRACELQPTDVRPHFRAGNCLYVLGRYREAKEEYLLALEAAETGGNQW-------------- 196 (660)
Q Consensus 131 lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~-------------- 196 (660)
+...+...+.++-|.+ .+...|.++...+.+|.++...|++++|..+|+++..-........
T Consensus 818 l~~~l~~~~~~~~~~~----l~~~~~~~~~~~yl~g~~~L~~ge~~~A~~~F~kaa~~~~~~~~l~~~~~~~~~~~~~~~ 893 (1139)
T 4fhn_B 818 LVEKLFLFKQYNACMQ----LIGWLNSDPIAVYLKALIYLKSKEAVKAVRCFKTTSLVLYSHTSQFAVLREFQEIAEKYH 893 (1139)
T ss_dssp HHHHHHHHSCTTHHHH----HHHHSCCCHHHHHHHHHHHHHTTCHHHHHHHHHTCCCSCTTCCCSCSSHHHHHHHHHTTT
T ss_pred HHHHHHHhhhHHHHHH----HhhhccCCcHHHHHHHHHHHhcCCHHHHHHHHHHHhhhhcccchhhhhhccccccccccc
Confidence 3444555566655443 3455678888889999999999999999999988742211100000
Q ss_pred -hchHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCC-cH----HHHHHHHHHHHHCCCHHHHHHHHH
Q 006120 197 -AYLLPQIYVNLGIALEGEGMVLSACEYYRESAILCPT-HF----RALKLLGSALFGVGEYRAAVKALE 259 (660)
Q Consensus 197 -~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~-~~----~~~~~lg~~~~~~g~~~~A~~~~~ 259 (660)
....+..|..+..++.+.+.++.+++..+.|++..+. +. ..|.++-..+...|+|++|...+.
T Consensus 894 ~~~~l~~YY~hv~~LFe~~~~~~~vi~fa~lAi~~~~~~~~~~~~~l~~~iFk~~L~l~~ye~Ay~aL~ 962 (1139)
T 4fhn_B 894 HQNLLSCYYLHLSKKLFEESAYIDALEFSLLADASKETDDEDLSIAITHETLKTACAAGKFDAAHVALM 962 (1139)
T ss_dssp SCCSSHHHHHHHHHHHHHTSCCHHHHHHHHHHHHHCCSCCHHHHHHHHHHHHHHHHHHCCSGGGGHHHH
T ss_pred ccccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhccCCChhhHHHHHHHHHHHHHhhCCHHHHHHHHH
Confidence 0002344555556666666666666666666665432 21 144555555566666666655554
No 265
>4ady_A RPN2, 26S proteasome regulatory subunit RPN2; protein binding, PC repeat; 2.70A {Saccharomyces cerevisiae} PDB: 4b4t_N
Probab=87.45 E-value=15 Score=42.20 Aligned_cols=238 Identities=12% Similarity=0.019 Sum_probs=131.9
Q ss_pred HhHHHHHHHHHHHHHHHHHHHHHHHHHhhcc-------CcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCH--
Q 006120 89 EKRVFWEESTHDYAVFVKELGVLRNRADGAR-------SREEAFDGHMAIGRVLYEHQLFKEALVSFKRACELQPTDV-- 159 (660)
Q Consensus 89 ~~~~~l~~~~~~~g~~~~Al~~l~~a~~~~~-------~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~-- 159 (660)
-+...+|.+....++ +++..+...+.... .......+-..+|.++...++ +++...+...+..+....
T Consensus 414 GAllaLGli~ag~~~--~~~~lL~~~L~~~~~~~~~~~~~~ir~gAaLGLGla~~GS~~-eev~e~L~~~L~dd~~~~~~ 490 (963)
T 4ady_A 414 GSLYGLGLIYAGFGR--DTTDYLKNIIVENSGTSGDEDVDVLLHGASLGIGLAAMGSAN-IEVYEALKEVLYNDSATSGE 490 (963)
T ss_dssp HHHHHHHHHTTTTTH--HHHHHHHHHHHHHSSCCSCHHHHHHHHHHHHHHHHHSTTCCC-HHHHHHHHHHHHTCCHHHHH
T ss_pred HHHHHHHHhcCCCcH--HHHHHHHHHHcCccccccccccHHHHHHHHHHHHHHhcCCCC-HHHHHHHHHHHhcCCHHHHH
Confidence 344445555544443 57777777665433 122233456678888777776 567777777776443211
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHhccCCCchhchHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCc--HHH
Q 006120 160 RPHFRAGNCLYVLGRYREAKEEYLLALEAAETGGNQWAYLLPQIYVNLGIALEGEGMVLSACEYYRESAILCPTH--FRA 237 (660)
Q Consensus 160 ~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~--~~~ 237 (660)
.+-+.+|.++.-.|+-+.....+..+.+-..+ ...-...+|..+...|+.+.+....+......... ..+
T Consensus 491 ~AalALGli~vGTgn~~ai~~LL~~~~e~~~e--------~vrR~aalgLGll~~g~~e~~~~li~~L~~~~dp~vRyga 562 (963)
T 4ady_A 491 AAALGMGLCMLGTGKPEAIHDMFTYSQETQHG--------NITRGLAVGLALINYGRQELADDLITKMLASDESLLRYGG 562 (963)
T ss_dssp HHHHHHHHHHTTCCCHHHHHHHHHHHHHCSCH--------HHHHHHHHHHHHHTTTCGGGGHHHHHHHHHCSCHHHHHHH
T ss_pred HHHHHHhhhhcccCCHHHHHHHHHHHhccCcH--------HHHHHHHHHHHhhhCCChHHHHHHHHHHHhCCCHHHHHHH
Confidence 34556788888888877666666665542211 22222444555556777776666666544432111 123
Q ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhCCChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhc
Q 006120 238 LKLLGSALFGVGEYRAAVKALEEAIFIKPDYADAHCDLASALHAMGEDERAIEVFQKAIDLKPGHVDALYNLGGLYMDLG 317 (660)
Q Consensus 238 ~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~La~~~~~~~ 317 (660)
-..+|..|...|+...-...+..+..-..++..-...+|..+...|+.+.+...+..... ..++.+.+..+.++....
T Consensus 563 a~alglAyaGTGn~~aIq~LL~~~~~d~~d~VRraAViaLGlI~~g~~e~v~rlv~~L~~--~~d~~VR~gAalALGli~ 640 (963)
T 4ady_A 563 AFTIALAYAGTGNNSAVKRLLHVAVSDSNDDVRRAAVIALGFVLLRDYTTVPRIVQLLSK--SHNAHVRCGTAFALGIAC 640 (963)
T ss_dssp HHHHHHHTTTSCCHHHHHHHHHHHHHCSCHHHHHHHHHHHHHHTSSSCSSHHHHTTTGGG--CSCHHHHHHHHHHHHHHT
T ss_pred HHHHHHHhcCCCCHHHHHHHHHHhccCCcHHHHHHHHHHHHhhccCCHHHHHHHHHHHHh--cCCHHHHHHHHHHHHHhc
Confidence 455778888999965444477766654333444444455555566776544444433322 234665555555444332
Q ss_pred CCC-HHHHHHHHHHHHcccCChhH
Q 006120 318 AGE-TEEAKKALKEALKMTNRVEL 340 (660)
Q Consensus 318 ~g~-~~eA~~~~~~al~l~p~~~~ 340 (660)
.|+ ..+++..+.+... +++...
T Consensus 641 aGn~~~~aid~L~~L~~-D~d~~V 663 (963)
T 4ady_A 641 AGKGLQSAIDVLDPLTK-DPVDFV 663 (963)
T ss_dssp SSSCCHHHHHHHHHHHT-CSSHHH
T ss_pred cCCCcHHHHHHHHHHcc-CCCHHH
Confidence 233 3678888877764 444333
No 266
>2wpv_A GET4, UPF0363 protein YOR164C; golgi-ER trafficking, tail-anchored protein, protein binding GET4; 1.99A {Saccharomyces cerevisiae} PDB: 3lku_A
Probab=87.38 E-value=24 Score=34.88 Aligned_cols=127 Identities=13% Similarity=0.002 Sum_probs=84.9
Q ss_pred HHHHHHHHHHHHHHHHHHHhhc---cCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh-----CCCCHHHHHHHHHH
Q 006120 97 STHDYAVFVKELGVLRNRADGA---RSREEAFDGHMAIGRVLYEHQLFKEALVSFKRACEL-----QPTDVRPHFRAGNC 168 (660)
Q Consensus 97 ~~~~~g~~~~Al~~l~~a~~~~---~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~-----~p~~~~~~~~la~~ 168 (660)
....-|+|.+|.+.++....+. .+..+..+.++.-+..+.+.|++..|..+..-.++. .+-+......+..+
T Consensus 22 ~~I~~G~yYEAhQ~~Rtl~~Ry~~~~~~~eAidlL~~ga~~ll~~~Q~~sa~DLa~llvev~~~~~~~~~~~~~~rl~~l 101 (312)
T 2wpv_A 22 NKIKAGDYYEAHQTLRTIANRYVRSKSYEHAIELISQGALSFLKAKQGGSGTDLIFYLLEVYDLAEVKVDDISVARLVRL 101 (312)
T ss_dssp HHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCCSHHHHHHHHHH
T ss_pred HHhhccChHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHCCCcchHHHHHHHHHHHHHHcCCCCCHHHHHHHHHH
Confidence 4456677788888777766554 355566777888888888889988888875555543 23345566666666
Q ss_pred HHHcCCHH-HHHHHHHHHHHHhccCCC-chhchHHHHHHHHHHHHHHCCCHHHHHHHHH
Q 006120 169 LYVLGRYR-EAKEEYLLALEAAETGGN-QWAYLLPQIYVNLGIALEGEGMVLSACEYYR 225 (660)
Q Consensus 169 ~~~~g~~~-~A~~~~~~al~~~p~~~~-~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~ 225 (660)
+.....-+ .=.+..+++++-....+. ... .+..+..+|..+...|++.+|..+|-
T Consensus 102 ~~~~p~~~~~r~~fi~~ai~WS~~~g~~~~G--dp~LH~~~a~~~~~e~~~~~A~~H~i 158 (312)
T 2wpv_A 102 IAELDPSEPNLKDVITGMNNWSIKFSEYKFG--DPYLHNTIGSKLLEGDFVYEAERYFM 158 (312)
T ss_dssp HTTCCTTCTTHHHHHHHHHHHHHHTSSCTTC--CHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred HHHCCCCCchHHHHHHHHHHHHhhcCCCCCC--CHHHHHHHHHHHhhcCCHHHHHHHHH
Confidence 65533211 225566677766543322 111 67899999999999999999988874
No 267
>4fhn_B Nucleoporin NUP120; protein complex,structural protein,nuclear pore complex,mRNA transport,protein transport, WD repeat; 6.99A {Schizosaccharomyces pombe 972h-}
Probab=87.30 E-value=5.4 Score=47.53 Aligned_cols=139 Identities=12% Similarity=0.039 Sum_probs=85.3
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHHHhccCCCchhchHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh--------------
Q 006120 165 AGNCLYVLGRYREAKEEYLLALEAAETGGNQWAYLLPQIYVNLGIALEGEGMVLSACEYYRESAIL-------------- 230 (660)
Q Consensus 165 la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~-------------- 230 (660)
+...+...+.++-+.+ .+...|. .+...+.+|.++...|++++|..+|+++-.-
T Consensus 818 l~~~l~~~~~~~~~~~----l~~~~~~--------~~~~~yl~g~~~L~~ge~~~A~~~F~kaa~~~~~~~~l~~~~~~~ 885 (1139)
T 4fhn_B 818 LVEKLFLFKQYNACMQ----LIGWLNS--------DPIAVYLKALIYLKSKEAVKAVRCFKTTSLVLYSHTSQFAVLREF 885 (1139)
T ss_dssp HHHHHHHHSCTTHHHH----HHHHSCC--------CHHHHHHHHHHHHHTTCHHHHHHHHHTCCCSCTTCCCSCSSHHHH
T ss_pred HHHHHHHhhhHHHHHH----HhhhccC--------CcHHHHHHHHHHHhcCCHHHHHHHHHHHhhhhcccchhhhhhccc
Confidence 3444555566655443 2233443 3444578899999999999999999887311
Q ss_pred ---------CCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCC-CH----HHHHHHHHHHHhCCChHHHHHHHHHHH
Q 006120 231 ---------CPTHFRALKLLGSALFGVGEYRAAVKALEEAIFIKPD-YA----DAHCDLASALHAMGEDERAIEVFQKAI 296 (660)
Q Consensus 231 ---------~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~-~~----~~~~~la~~~~~~g~~~~A~~~~~~al 296 (660)
....+..|..+..++.+.|.++.+++..+.|++..+. +. ..|.++=..+...|+|++|...+...=
T Consensus 886 ~~~~~~~~~~~~l~~YY~hv~~LFe~~~~~~~vi~fa~lAi~~~~~~~~~~~~~l~~~iFk~~L~l~~ye~Ay~aL~~~p 965 (1139)
T 4fhn_B 886 QEIAEKYHHQNLLSCYYLHLSKKLFEESAYIDALEFSLLADASKETDDEDLSIAITHETLKTACAAGKFDAAHVALMVLS 965 (1139)
T ss_dssp HHHHHTTTSCCSSHHHHHHHHHHHHHTSCCHHHHHHHHHHHHHCCSCCHHHHHHHHHHHHHHHHHHCCSGGGGHHHHHHH
T ss_pred ccccccccccccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhccCCChhhHHHHHHHHHHHHHhhCCHHHHHHHHHhCC
Confidence 0111334555666777778888888888888876543 22 256666677777888888877664432
Q ss_pred HhCCCCHHHHHHHHHHHHHh
Q 006120 297 DLKPGHVDALYNLGGLYMDL 316 (660)
Q Consensus 297 ~~~p~~~~a~~~La~~~~~~ 316 (660)
. .....+.+..|...+.+.
T Consensus 966 d-~~~r~~cLr~LV~~lce~ 984 (1139)
T 4fhn_B 966 T-TPLKKSCLLDFVNQLTKQ 984 (1139)
T ss_dssp H-SSSCHHHHHHHHHHHHHH
T ss_pred C-HHHHHHHHHHHHHHHHhC
Confidence 1 122345555665555555
No 268
>3lpz_A GET4 (YOR164C homolog); protein targeting, tail-anchored protein biogenesis, GET PAT GET5 binding, protein transport; 1.98A {Chaetomium thermophilum}
Probab=76.90 E-value=63 Score=32.18 Aligned_cols=80 Identities=14% Similarity=0.130 Sum_probs=44.5
Q ss_pred CcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCC-HHHHHHHHHHHHhCCChHHHHHHHHHHHHhCCCCHHHHHHHHH
Q 006120 233 THFRALKLLGSALFGVGEYRAAVKALEEAIFIKPDY-ADAHCDLASALHAMGEDERAIEVFQKAIDLKPGHVDALYNLGG 311 (660)
Q Consensus 233 ~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~-~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~La~ 311 (660)
.++..+..+|..|.+.+++.+|..+|- + ..++ +..+..+-.-+...+ .|...+.+...+.
T Consensus 134 Gdp~LH~~ig~~~~~e~~~~~Ae~H~i--l--g~~~s~~~~a~mL~ew~~~~---------------~~~e~dlfiaRaV 194 (336)
T 3lpz_A 134 GDPELHHVVGTLYVEEGEFEAAEKHLV--L--GTKESPEVLARMEYEWYKQD---------------ESHTAPLYCARAV 194 (336)
T ss_dssp CCHHHHHHHHHHHHHTTCHHHHHHHHT--T--SCTTHHHHHHHHHHHHHHTS---------------CGGGHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHccCCHHHHHHHHH--h--cCCchHHHHHHHHHHHHHhc---------------CCccHHHHHHHHH
Confidence 567788888888888888888877773 1 2222 233332222222222 2334444444444
Q ss_pred H-HHHhcCCCHHHHHHHHHHHHc
Q 006120 312 L-YMDLGAGETEEAKKALKEALK 333 (660)
Q Consensus 312 ~-~~~~~~g~~~eA~~~~~~al~ 333 (660)
+ |..+ ++...|...++.-++
T Consensus 195 L~yL~l--~n~~~A~~~~~~f~~ 215 (336)
T 3lpz_A 195 LPYLLV--ANVRAANTAYRIFTS 215 (336)
T ss_dssp HHHHHT--TCHHHHHHHHHHHHH
T ss_pred HHHHHh--CCHHHHHHHHHHHHH
Confidence 3 4445 888888877665543
No 269
>4ady_A RPN2, 26S proteasome regulatory subunit RPN2; protein binding, PC repeat; 2.70A {Saccharomyces cerevisiae} PDB: 4b4t_N
Probab=74.59 E-value=97 Score=35.58 Aligned_cols=197 Identities=14% Similarity=0.121 Sum_probs=113.9
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCC----HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhccCCCc--hhchH
Q 006120 128 HMAIGRVLYEHQLFKEALVSFKRACELQ-PTD----VRPHFRAGNCLYVLGRYREAKEEYLLALEAAETGGNQ--WAYLL 200 (660)
Q Consensus 128 ~~~lg~~~~~~g~~~~A~~~~~~al~~~-p~~----~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~--~~~~~ 200 (660)
...+|.++ .|+.++++..+.+.+... .++ ..+.+.+|.++...+ .++..++...+......... .....
T Consensus 379 ~aSLGlIh--~g~~~~gl~~L~~yL~~~~s~~~~ik~GAllaLGli~ag~~--~~~~~lL~~~L~~~~~~~~~~~~~~ir 454 (963)
T 4ady_A 379 TASLGVIH--KGNLLEGKKVMAPYLPGSRASSRFIKGGSLYGLGLIYAGFG--RDTTDYLKNIIVENSGTSGDEDVDVLL 454 (963)
T ss_dssp HHHHHHHT--SSCTTTHHHHHTTTSTTSCCSCHHHHHHHHHHHHHHTTTTT--HHHHHHHHHHHHHHSSCCSCHHHHHHH
T ss_pred HHHhhhhc--cCchHHHHHHHHHhccccCCCcHHHHHHHHHHHHHhcCCCc--HHHHHHHHHHHcCccccccccccHHHH
Confidence 33444443 466677777777665421 122 345566666665554 47888888877654310000 00013
Q ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCcH--HHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHH
Q 006120 201 PQIYVNLGIALEGEGMVLSACEYYRESAILCPTHF--RALKLLGSALFGVGEYRAAVKALEEAIFIKPDYADAHCDLASA 278 (660)
Q Consensus 201 ~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~--~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~ 278 (660)
..+...||.++.-.++ +++.+.+...+..+.... .+-..+|.++...|+-+.....+..+.+-..+...-...+|..
T Consensus 455 ~gAaLGLGla~~GS~~-eev~e~L~~~L~dd~~~~~~~AalALGli~vGTgn~~ai~~LL~~~~e~~~e~vrR~aalgLG 533 (963)
T 4ady_A 455 HGASLGIGLAAMGSAN-IEVYEALKEVLYNDSATSGEAAALGMGLCMLGTGKPEAIHDMFTYSQETQHGNITRGLAVGLA 533 (963)
T ss_dssp HHHHHHHHHHSTTCCC-HHHHHHHHHHHHTCCHHHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHHCSCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhcCCCC-HHHHHHHHHHHhcCCHHHHHHHHHHHhhhhcccCCHHHHHHHHHHHhccCcHHHHHHHHHHHH
Confidence 3456678887776665 567777777776443222 3556788888888987766666666665433333333455556
Q ss_pred HHhCCChHHHHHHHHHHHHhCCCCHH----HHHHHHHHHHHhcCCCHHHHHHHHHHHHc
Q 006120 279 LHAMGEDERAIEVFQKAIDLKPGHVD----ALYNLGGLYMDLGAGETEEAKKALKEALK 333 (660)
Q Consensus 279 ~~~~g~~~~A~~~~~~al~~~p~~~~----a~~~La~~~~~~~~g~~~eA~~~~~~al~ 333 (660)
+...|+.+.+....+..... + ++. +-..+|.+|.-. |+...-...+..+..
T Consensus 534 ll~~g~~e~~~~li~~L~~~-~-dp~vRygaa~alglAyaGT--Gn~~aIq~LL~~~~~ 588 (963)
T 4ady_A 534 LINYGRQELADDLITKMLAS-D-ESLLRYGGAFTIALAYAGT--GNNSAVKRLLHVAVS 588 (963)
T ss_dssp HHTTTCGGGGHHHHHHHHHC-S-CHHHHHHHHHHHHHHTTTS--CCHHHHHHHHHHHHH
T ss_pred hhhCCChHHHHHHHHHHHhC-C-CHHHHHHHHHHHHHHhcCC--CCHHHHHHHHHHhcc
Confidence 66788887777766665443 2 333 233455556654 886555556666654
No 270
>2cor_A Pinch protein; LIM domain, particularly interesting NEW Cys- His protein, LIM and senescent cell antigen-like domains 1, structural genomics; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=69.38 E-value=2.4 Score=32.52 Aligned_cols=40 Identities=18% Similarity=0.260 Sum_probs=31.6
Q ss_pred cccCccccCCC-ccccccccccccccccccccccccccccccC
Q 006120 580 LEAGDRNRHGR-HVCSVCRYPIIGSRFKEMKSHFSLCSQCYSE 621 (660)
Q Consensus 580 ~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 621 (660)
+.+.++.-|-. -+|+.|+-|+.|..| + +..-..|..||.+
T Consensus 30 v~a~~~~~H~~CF~C~~C~~~L~~~~f-~-~~g~~yC~~cy~~ 70 (79)
T 2cor_A 30 LIFKNDPYHPDHFNCANCGKELTADAR-E-LKGELYCLPCHDK 70 (79)
T ss_dssp CCCSSSCCCTTTSBCSSSCCBCCTTCE-E-ETTEEECHHHHHT
T ss_pred EEECcceeCCCCCEeCCCCCccCCCCE-e-ECCEEeCHHHHHH
Confidence 56778888874 689999999999888 4 4555679999987
No 271
>4b4t_O 26S proteasome regulatory subunit RPN9; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=67.68 E-value=39 Score=34.64 Aligned_cols=97 Identities=7% Similarity=-0.133 Sum_probs=69.4
Q ss_pred HHHHHcCCHHHHHHHHHHHHHhC-----------------CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhccCCCc
Q 006120 133 RVLYEHQLFKEALVSFKRACELQ-----------------PTDVRPHFRAGNCLYVLGRYREAKEEYLLALEAAETGGNQ 195 (660)
Q Consensus 133 ~~~~~~g~~~~A~~~~~~al~~~-----------------p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~ 195 (660)
.+.....+.++|++.+.+....- .....+...++..|...|+.++|...++++-..-....+.
T Consensus 84 ~~~~~~~d~~~al~~L~~~~~~~~~~~~~~~~~~~~~~~~ea~l~i~~~i~~~yl~~~d~~~a~~~l~~~~~~l~~~~~~ 163 (393)
T 4b4t_O 84 ASLKDSKDFDESLKYLDDLKAQFQELDSKKQRNNGSKDHGDGILLIDSEIARTYLLKNDLVKARDLLDDLEKTLDKKDSI 163 (393)
T ss_dssp HHHHHTTCHHHHHHHHHHHTTTSHHHHSSCCCCCCSSSSCCSHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHSCCS
T ss_pred HHHhhcCCHHHHHHHHHHHHHHHhhhhhhhhcccchhhhhhhHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhhhccCCc
Confidence 34556678899999888764321 0123566778999999999999999999998765544433
Q ss_pred hhchHHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Q 006120 196 WAYLLPQIYVNLGIALEGEGMVLSACEYYRESAI 229 (660)
Q Consensus 196 ~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~ 229 (660)
........+...+..+...+++..+....-..+.
T Consensus 164 ~~~v~~~~y~~~~~~~~~~~~~a~~y~~~l~~l~ 197 (393)
T 4b4t_O 164 PLRITNSFYSTNSQYFKFKNDFNSFYYTSLLYLS 197 (393)
T ss_dssp SSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHh
Confidence 3333677777788888888998887776666654
No 272
>4rxn_A Rubredoxin; electron transfer(iron-sulfur protein); 1.20A {Clostridium pasteurianum} SCOP: g.41.5.1 PDB: 5rxn_A 1bfy_A 1fhh_A 1fhm_A 1irn_A 1iro_A 1r0f_A 1r0g_A 1r0h_A 1r0i_A 1r0j_A 1t9q_A 1c09_A 1b2j_A 1b13_A 1smm_A 1smu_A 1smw_A 1be7_A 1t9o_A ...
Probab=67.50 E-value=2.4 Score=29.79 Aligned_cols=32 Identities=28% Similarity=0.744 Sum_probs=24.6
Q ss_pred CCCccccccccccc------------ccccccccccccccccccc
Q 006120 588 HGRHVCSVCRYPII------------GSRFKEMKSHFSLCSQCYS 620 (660)
Q Consensus 588 ~~~~~~~~~~~~~~------------~~~~~~~~~~~~~~~~~~~ 620 (660)
|....|.+|+|.-+ |-+|.++-..+ .|..|-.
T Consensus 1 m~~y~C~vCGyvYd~~~Gdp~~gi~pGt~fe~lP~dw-~CP~Cg~ 44 (54)
T 4rxn_A 1 MKKYTCTVCGYIYDPEDGDPDDGVNPGTDFKDIPDDW-VCPLCGV 44 (54)
T ss_dssp CCCEEETTTCCEECTTTCBGGGTBCTTCCGGGSCTTC-BCTTTCC
T ss_pred CCceECCCCCeEECCCcCCcccCcCCCCChhHCCCCC-cCcCCCC
Confidence 34678999999654 57899987665 5999965
No 273
>2gmg_A Hypothetical protein PF0610; winged-helix like protein with metal binding site, structura genomics, PSI, protein structure initiative; NMR {Pyrococcus furiosus} SCOP: a.4.5.82
Probab=66.53 E-value=2.4 Score=34.22 Aligned_cols=40 Identities=28% Similarity=0.473 Sum_probs=30.7
Q ss_pred CCCccccccccccccccccccccccccccccccCCCCCCCCcccc
Q 006120 588 HGRHVCSVCRYPIIGSRFKEMKSHFSLCSQCYSEGKVPPTFKQDE 632 (660)
Q Consensus 588 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 632 (660)
.--+.|-.|+|.. - +++ ..-+-|..|-||--.||.|+.++
T Consensus 65 v~p~~C~~CG~~F-~---~~~-~kPsrCP~CkSe~Ie~P~F~I~~ 104 (105)
T 2gmg_A 65 IKPAQCRKCGFVF-K---AEI-NIPSRCPKCKSEWIEEPRFKLER 104 (105)
T ss_dssp ECCCBBTTTCCBC-C---CCS-SCCSSCSSSCCCCBCCCCEEEEE
T ss_pred EECcChhhCcCee-c---ccC-CCCCCCcCCCCCccCCcceeecC
Confidence 4468899999986 1 222 23488999999999999998754
No 274
>3lpz_A GET4 (YOR164C homolog); protein targeting, tail-anchored protein biogenesis, GET PAT GET5 binding, protein transport; 1.98A {Chaetomium thermophilum}
Probab=64.73 E-value=1.2e+02 Score=30.24 Aligned_cols=126 Identities=13% Similarity=-0.046 Sum_probs=78.6
Q ss_pred HHHHHHHH---HHHHHHHHHHHhhc---cCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh-----CCCCHHHHHHH
Q 006120 97 STHDYAVF---VKELGVLRNRADGA---RSREEAFDGHMAIGRVLYEHQLFKEALVSFKRACEL-----QPTDVRPHFRA 165 (660)
Q Consensus 97 ~~~~~g~~---~~Al~~l~~a~~~~---~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~-----~p~~~~~~~~l 165 (660)
...+-|+| .+|-+.++....+. .+..+..+.++.-+..+.+.|++..|.++..-.++. .|-+......+
T Consensus 21 ~~I~~G~y~~~YEAHQ~~RTi~~Ry~~~k~y~eAidLL~~GA~~ll~~~Q~~sg~DL~~llvevy~~~~~~~~~~~~~rL 100 (336)
T 3lpz_A 21 RRIAEGQPEEQYEAAQETRLVAARYSKQGNWAAAVDILASVSQTLLRSGQGGSGGDLAVLLVDTFRQAGQRVDGASRGKL 100 (336)
T ss_dssp HHHHHCCHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCCCCHHHHHHH
T ss_pred HHHhCCCCccccHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHHCCCcchHHHHHHHHHHHHHHcCCCCCHHHHHHH
Confidence 33455666 66666666554433 344556677777778888888888877776555443 13344566666
Q ss_pred HHHHHHcCCHH-HHHHHHHHHHHHhccCCC-chhchHHHHHHHHHHHHHHCCCHHHHHHHH
Q 006120 166 GNCLYVLGRYR-EAKEEYLLALEAAETGGN-QWAYLLPQIYVNLGIALEGEGMVLSACEYY 224 (660)
Q Consensus 166 a~~~~~~g~~~-~A~~~~~~al~~~p~~~~-~~~~~~~~~~~~la~~~~~~g~~~~A~~~~ 224 (660)
..++.....-+ .=..+..++++-....+. ... .+..+..+|..+.+.+++.+|..+|
T Consensus 101 ~~L~~~~~~~~p~r~~fi~~ai~WS~~~g~~~~G--dp~LH~~ig~~~~~e~~~~~Ae~H~ 159 (336)
T 3lpz_A 101 LGCLRLFQPGEPVRKRFVKEMIDWSKKFGDYPAG--DPELHHVVGTLYVEEGEFEAAEKHL 159 (336)
T ss_dssp HHHHTTSCTTCHHHHHHHHHHHHHHHHHSSCTTC--CHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred HHHHHhCCCCCcHHHHHHHHHHHHHhhcCCCCCC--CHHHHHHHHHHHHccCCHHHHHHHH
Confidence 66665544311 224455566654433111 111 6789999999999999999998887
No 275
>4gq2_M Nucleoporin NUP120; beta propeller alpha helical, component of nuclear pore COMP transport protein; 2.40A {Schizosaccharomyces pombe} PDB: 4fhm_B
Probab=63.23 E-value=64 Score=37.39 Aligned_cols=52 Identities=6% Similarity=-0.006 Sum_probs=40.5
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Q 006120 131 IGRVLYEHQLFKEALVSFKRACELQPTDVRPHFRAGNCLYVLGRYREAKEEYLLAL 186 (660)
Q Consensus 131 lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al 186 (660)
+...+...|.++-|. +.+...|.++..-+.+|.++...|++++|..+|++|-
T Consensus 816 l~~~L~~~~~~~~a~----eL~~~~~~t~~~~yv~gr~~L~~ge~~~A~~~F~kAA 867 (950)
T 4gq2_M 816 LVEKLFLFKQYNACM----QLIGWLNSDPIAVYLKALIYLKSKEAVKAVRCFKTTS 867 (950)
T ss_dssp HHHHHHHTTCHHHHH----HHGGGCCSSHHHHHHHHHHHHHTTCHHHHHHHHHTCC
T ss_pred HHHHHHHhcHHHHHH----HHHhhcCCChHHHHHHHHHHHHcCCHHHHHHHHHHHh
Confidence 445556667666443 3455668888888999999999999999999999875
No 276
>1eg3_A Dystrophin; EF-hand like domain, WW domain, structural protein; 2.00A {Homo sapiens} SCOP: a.39.1.7 a.39.1.7 b.72.1.1 PDB: 1eg4_A
Probab=61.22 E-value=36 Score=32.64 Aligned_cols=107 Identities=13% Similarity=0.124 Sum_probs=68.6
Q ss_pred HHHHHHHHhhhhccCCCcccccchhhhhhhcccCCCCHHHHHHhhhhhhcccccCCCCccchhccHHHHHHHhHHHhc--
Q 006120 458 AVKAINERILSVLDETGSARVDLGMFYAILAPICSGSPEKRKRVAFDALLWRPVNEGSTQVRKVDAVRYIKLLRAVYI-- 535 (660)
Q Consensus 458 ~v~~l~~~~l~~hDr~g~~~fev~~y~~~~~~~~~~~~~~r~r~~~d~~~~~~~~~~~a~~i~~D~~~~l~dL~~~~~-- 535 (660)
.+..+..-+|...|.+++|..++.=|-..+.-.+.+.+.+++|-.|. ..-+.+ ..|.+.....|+.++..++.
T Consensus 129 ~~~~~a~~lf~~FD~~~~G~I~f~ef~~aLs~l~rG~leeKL~w~F~--lyDD~~---G~I~~~El~~il~~i~~i~~~v 203 (261)
T 1eg3_A 129 CVDMCLNWLLNVYDTGRTGRIRVLSFKTGIISLCKAHLEDKYRYLFK--QVASST---GFCDQRRLGLLLHDSIQIPRQL 203 (261)
T ss_dssp HHHHHHHHHHHHHCTTCCSEEEHHHHHHHHHHTSSSCHHHHHHHHHH--HHSCTT---SCBCHHHHHHHHHHHHHHHHHT
T ss_pred hHHHHHHHHHHHccCCCCceEeHHHHHHHHHHHcCCCHHHHHHHHHh--eeeCCC---CCCcHHHHHHHHHHHHHHHHhc
Confidence 46777888999999998888777555445666788899999988887 322332 35777777778877655541
Q ss_pred -cC-----CCchhhhh-hhc-cCCCcccchhHHhh-hccCCCC
Q 006120 536 -PS-----HGVSEMME-VHG-EADSSMVSLSEFLV-MFDDPDW 569 (660)
Q Consensus 536 -~~-----~~~~~~~~-~~~-~~~~~~~~~~~~~~-~~~~~~~ 569 (660)
.. ..+.+..+ +.- .++...|+..||.+ +-.||..
T Consensus 204 ge~~~~~~~~~e~~v~~~F~~~d~dg~It~~EFl~~~~~dp~i 246 (261)
T 1eg3_A 204 GEVASFGGSNIEPSVRSCFQFANNKPEIEAALFLDWMRLEPQS 246 (261)
T ss_dssp TCGGGGTCSCCHHHHHHHHHHTTTCSCBCHHHHHHHHHTCCTT
T ss_pred CCcccCCCCCHHHHHHHHHHhCCCCCcCCHHHHHHHHHhCcHH
Confidence 11 11221111 111 13556899999999 6667743
No 277
>1wy6_A Hypothetical protein ST1625; helical repeat protein, structural genomics, unknown function; 2.20A {Sulfolobus tokodaii} SCOP: a.118.20.1
Probab=59.17 E-value=46 Score=28.49 Aligned_cols=52 Identities=17% Similarity=0.218 Sum_probs=24.3
Q ss_pred HhCCChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHc
Q 006120 280 HAMGEDERAIEVFQKAIDLKPGHVDALYNLGGLYMDLGAGETEEAKKALKEALK 333 (660)
Q Consensus 280 ~~~g~~~~A~~~~~~al~~~p~~~~a~~~La~~~~~~~~g~~~eA~~~~~~al~ 333 (660)
..+|+-++-.+.+...+.-.+-+++.+..+|.+|.+. |+..+|.+.+.+|-+
T Consensus 102 v~~~KkDqLdki~~~~l~n~~~~~~~l~kia~Ay~Kl--g~~r~a~eLl~~AC~ 153 (172)
T 1wy6_A 102 VIQGKRDKLEEIGREILKNNEVSASILVAIANALRRV--GDERDATTLLIEACK 153 (172)
T ss_dssp HHTTCHHHHHHHHHHHC--CCSCHHHHHHHHHHHHHT--TCHHHHHHHHHHHHH
T ss_pred HHhccHhHHHHHHHHHhccCCCChHHHHHHHHHHHHh--cchhhHHHHHHHHHH
Confidence 3444444444444443333344455555555555555 555555555555443
No 278
>6rxn_A Rubredoxin; electron transfer(iron-sulfur protein); 1.50A {Desulfovibrio desulfuricans} SCOP: g.41.5.1
Probab=57.82 E-value=4.7 Score=27.26 Aligned_cols=32 Identities=25% Similarity=0.612 Sum_probs=24.5
Q ss_pred CCCccccccccccc---c--cccccccccccccccccc
Q 006120 588 HGRHVCSVCRYPII---G--SRFKEMKSHFSLCSQCYS 620 (660)
Q Consensus 588 ~~~~~~~~~~~~~~---~--~~~~~~~~~~~~~~~~~~ 620 (660)
|....|.+|+|..+ | -+|.++-..+ .|..|-.
T Consensus 2 m~~y~C~vCGyvyd~~~Gd~t~f~~lP~dw-~CP~Cg~ 38 (46)
T 6rxn_A 2 MQKYVCNVCGYEYDPAEHDNVPFDQLPDDW-CCPVCGV 38 (46)
T ss_dssp CCCEEETTTCCEECGGGGTTCCGGGSCTTC-BCTTTCC
T ss_pred CCEEECCCCCeEEeCCcCCCcchhhCCCCC-cCcCCCC
Confidence 55678999999887 6 4788876654 5999965
No 279
>1e8j_A Rubredoxin; iron-sulfur-protein, zinc-substitution, thermostability; NMR {Desulfovibrio gigas} SCOP: g.41.5.1 PDB: 1rdg_A 2dsx_A 1spw_A
Probab=57.49 E-value=4.5 Score=28.18 Aligned_cols=32 Identities=28% Similarity=0.781 Sum_probs=24.4
Q ss_pred CCccccccccccc------------cccccccccccccccccccC
Q 006120 589 GRHVCSVCRYPII------------GSRFKEMKSHFSLCSQCYSE 621 (660)
Q Consensus 589 ~~~~~~~~~~~~~------------~~~~~~~~~~~~~~~~~~~~ 621 (660)
....|.+|+|.-+ |.+|.++-..+ .|..|-..
T Consensus 2 ~~y~C~~CGyvYd~~~Gdp~~gi~pGt~f~~lP~dw-~CP~Cg~~ 45 (52)
T 1e8j_A 2 DIYVCTVCGYEYDPAKGDPDSGIKPGTKFEDLPDDW-ACPVCGAS 45 (52)
T ss_dssp CCEECSSSCCCCCTTTCCTTTTCCSSCCTTSSCTTC-CCSSSCCC
T ss_pred CcEEeCCCCeEEcCCcCCcccCcCCCCchHHCCCCC-cCCCCCCc
Confidence 4578999999887 56788886554 69999763
No 280
>2iyb_E Testin, TESS, TES; LIM domain, SH3-binding, tumour supressor LIM domain EVH1 DO cell motility, phosphorylation, cytoskeleton; 2.35A {Homo sapiens}
Probab=57.10 E-value=2.5 Score=30.93 Aligned_cols=41 Identities=22% Similarity=0.602 Sum_probs=31.5
Q ss_pred hcccCccccC--C-Cccccccccccccccccccccccccc-ccccc
Q 006120 579 KLEAGDRNRH--G-RHVCSVCRYPIIGSRFKEMKSHFSLC-SQCYS 620 (660)
Q Consensus 579 ~~~~~~~~~~--~-~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~ 620 (660)
.+.+.++.-| . =-+|+.|+-|+.|.+|-+... -..| ..||.
T Consensus 18 ~v~a~~~~wH~~~~CF~C~~C~~~L~~~~f~~~~g-~~yC~~~C~~ 62 (65)
T 2iyb_E 18 RVTYNNFSWHASTECFLCSCCSKCLIGQKFMPVEG-MVFCSVECKK 62 (65)
T ss_dssp EEEETTEEEETTTTTSBCTTTCCBCTTSCCEEETT-EEESSHHHHH
T ss_pred EEEECCCccCCCCCCEECCCCCCcCCCCceEEECC-EEecCHHHhh
Confidence 3566788888 3 468899999999999987654 4679 88884
No 281
>4gq2_M Nucleoporin NUP120; beta propeller alpha helical, component of nuclear pore COMP transport protein; 2.40A {Schizosaccharomyces pombe} PDB: 4fhm_B
Probab=56.84 E-value=73 Score=36.89 Aligned_cols=28 Identities=11% Similarity=-0.128 Sum_probs=17.0
Q ss_pred HHHHHHHHHHHhcCCCHHHHHHHHHHHHcc
Q 006120 305 ALYNLGGLYMDLGAGETEEAKKALKEALKM 334 (660)
Q Consensus 305 a~~~La~~~~~~~~g~~~eA~~~~~~al~l 334 (660)
.|..+..++... +-++-++.+.+.|++.
T Consensus 899 YY~hV~~LFE~~--~a~~~vi~fA~lAI~~ 926 (950)
T 4gq2_M 899 YYLHLSKKLFEE--SAYIDALEFSLLADAS 926 (950)
T ss_dssp HHHHHHHHHHHT--TCHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHhc--CCHHHHHHHHHHHHhh
Confidence 445555555555 6666666666666654
No 282
>1v6g_A Actin binding LIM protein 2; LIM domain, zinc binding domain, ablim2, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=56.73 E-value=4.2 Score=31.17 Aligned_cols=58 Identities=21% Similarity=0.265 Sum_probs=38.6
Q ss_pred CCCcchhhhhhhhcccCccccCC-CccccccccccccccccccccccccccccccCCCCCCCC
Q 006120 567 PDWGFGIMSTLMKLEAGDRNRHG-RHVCSVCRYPIIGSRFKEMKSHFSLCSQCYSEGKVPPTF 628 (660)
Q Consensus 567 ~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 628 (660)
+.++-.|... .+++.++.-|- =-+|++|.-|+....|-++...--+|..|| .+++++.
T Consensus 19 ~~C~~~I~~~--~v~a~~~~wH~~CF~C~~C~~~L~~~~~~~~~~~~~~C~~C~--~~~~~~~ 77 (81)
T 1v6g_A 19 FSCDQFIEGE--VVSALGKTYHPDCFVCAVCRLPFPPGDRVTFNGKECMCQKCS--LPVSVSG 77 (81)
T ss_dssp TTTCCBCCSC--CEEETTEEECTTTSSCSSSCCCCCSSSCEEEETTEEEEHHHH--SCCSSCC
T ss_pred ccccCEeccc--eEEECCceeCccCCccccCCCCCCCCCEEEeCCCCEEChhhh--cccCCCC
Confidence 3444455533 35677888887 458999999997555556655555899999 3555554
No 283
>2kn9_A Rubredoxin; metalloprotein, ssgcid, structural genomics, seattle structural genomics center for infectious electron transport, iron; NMR {Mycobacterium tuberculosis}
Probab=54.61 E-value=3.8 Score=31.43 Aligned_cols=33 Identities=15% Similarity=0.497 Sum_probs=25.3
Q ss_pred CCCcccccccccccc------------ccccccccccccccccccC
Q 006120 588 HGRHVCSVCRYPIIG------------SRFKEMKSHFSLCSQCYSE 621 (660)
Q Consensus 588 ~~~~~~~~~~~~~~~------------~~~~~~~~~~~~~~~~~~~ 621 (660)
+....|.+|+|.-++ .+|.++-..| .|..|-..
T Consensus 25 m~~y~C~vCGyvYD~~~Gdp~~gI~pGT~fedlPddW-~CPvCga~ 69 (81)
T 2kn9_A 25 YKLFRCIQCGFEYDEALGWPEDGIAAGTRWDDIPDDW-SCPDCGAA 69 (81)
T ss_dssp CCEEEETTTCCEEETTTCBTTTTBCTTCCTTTSCTTC-CCTTTCCC
T ss_pred cceEEeCCCCEEEcCCcCCcccCcCCCCChhHCCCCC-cCCCCCCC
Confidence 347999999998874 6788886544 69999763
No 284
>1wig_A KIAA1808 protein; LIM domain, zinc finger, metal-binding protein, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=54.59 E-value=5.3 Score=29.95 Aligned_cols=41 Identities=22% Similarity=0.394 Sum_probs=32.2
Q ss_pred cccCccccCCC-ccccccccccc-cccccccccccccccccccC
Q 006120 580 LEAGDRNRHGR-HVCSVCRYPII-GSRFKEMKSHFSLCSQCYSE 621 (660)
Q Consensus 580 ~~~~~~~~~~~-~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~ 621 (660)
+.+.|+.-|-. -+|++|.-|+. |..|-+. ..--.|..||..
T Consensus 20 v~a~~~~wH~~CF~C~~C~~~L~~~~~f~~~-~~~~yC~~C~~~ 62 (73)
T 1wig_A 20 LEAGEKHYHPSCALCVRCGQMFAEGEEMYLQ-GSSIWHPACRQA 62 (73)
T ss_dssp BCCSSCCBCTTTSCCSSSCCCCCSSCCCEEE-TTEEECTTHHHH
T ss_pred EEeCCCCCCCCcCEeCCCCCCCCCCCeeEee-CCEEEChHHChH
Confidence 46788888874 68999999998 8988765 445689999853
No 285
>3esl_A Checkpoint serine/threonine-protein kinase BUB1; mitotic spindle checkpoint, TPR motif, all-alpha domain, MAD3-like domain; HET: NHE; 1.74A {Saccharomyces cerevisiae}
Probab=54.31 E-value=1.3e+02 Score=27.48 Aligned_cols=78 Identities=10% Similarity=-0.049 Sum_probs=49.5
Q ss_pred HHHHHHHHHHHHhCCChHHHHHHHHHHHHhC--CCCHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHccc--CChhHHHHH
Q 006120 269 ADAHCDLASALHAMGEDERAIEVFQKAIDLK--PGHVDALYNLGGLYMDLGAGETEEAKKALKEALKMT--NRVELHDAV 344 (660)
Q Consensus 269 ~~~~~~la~~~~~~g~~~~A~~~~~~al~~~--p~~~~a~~~La~~~~~~~~g~~~eA~~~~~~al~l~--p~~~~~~~~ 344 (660)
..+|..++..+ ..++..++...|.-..... -..+..|...|..+... |++.+|...|+.+++.. |...+....
T Consensus 80 LklWl~Ya~~~-~~~~~~~p~~if~~L~~~~IG~~~AlfYe~wA~~lE~~--g~~~~A~~Vy~~GI~~~A~P~~rL~~~~ 156 (202)
T 3esl_A 80 LKIWIWYINLF-LSNNFHESENTFKYMFNKGIGTKLSLFYEEFSKLLENA--QFFLEAKVLLELGAENNCRPYNRLLRSL 156 (202)
T ss_dssp HHHHHHHHHHH-STTCHHHHHHHHHHHHHHTSSTTBHHHHHHHHHHHHHT--TCHHHHHHHHHHHHHTTCBSHHHHHHHH
T ss_pred HHHHHHHHHhh-cccccCCHHHHHHHHHHCCCcHHHHHHHHHHHHHHHHc--CCHHHHHHHHHHHHHcCCccHHHHHHHH
Confidence 45666666654 2344667777777766554 44566777777777777 88888888888888765 333344444
Q ss_pred HHHHH
Q 006120 345 SHLKQ 349 (660)
Q Consensus 345 ~~l~~ 349 (660)
..+..
T Consensus 157 ~~F~~ 161 (202)
T 3esl_A 157 SNYED 161 (202)
T ss_dssp HHHHH
T ss_pred HHHHH
Confidence 44433
No 286
>2wpv_A GET4, UPF0363 protein YOR164C; golgi-ER trafficking, tail-anchored protein, protein binding GET4; 1.99A {Saccharomyces cerevisiae} PDB: 3lku_A
Probab=54.16 E-value=1.7e+02 Score=28.74 Aligned_cols=138 Identities=10% Similarity=-0.030 Sum_probs=70.6
Q ss_pred HHHHHHHHHHHHhhccCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHH
Q 006120 104 FVKELGVLRNRADGARSREEAFDGHMAIGRVLYEHQLFKEALVSFKRACELQPTDVRPHFRAGNCLYVLGRYREAKEEYL 183 (660)
Q Consensus 104 ~~~Al~~l~~a~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~ 183 (660)
.++-+..+++.++.- +.-+....+..+..-|.+++++++|++++.... ..+.+.|++..|..+..
T Consensus 13 ~~r~l~rl~~~I~~G-~yYEAhQ~~Rtl~~Ry~~~~~~~eAidlL~~ga--------------~~ll~~~Q~~sa~DLa~ 77 (312)
T 2wpv_A 13 LAKTLQRFENKIKAG-DYYEAHQTLRTIANRYVRSKSYEHAIELISQGA--------------LSFLKAKQGGSGTDLIF 77 (312)
T ss_dssp HHHHHHHHHHHHHHT-CHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHH--------------HHHHHTTCHHHHHHHHH
T ss_pred HHHHHHHHHHHhhcc-ChHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHH--------------HHHHHCCCcchHHHHHH
Confidence 455566666655542 222333556677778888889998888765543 33344444444444433
Q ss_pred HHHHHhccCCCchhchHHHHHHHHHHHHHHCCCHH-HHHHHHHHHHHh-------CCCcHHHHHHHHHHHHHCCCHHHHH
Q 006120 184 LALEAAETGGNQWAYLLPQIYVNLGIALEGEGMVL-SACEYYRESAIL-------CPTHFRALKLLGSALFGVGEYRAAV 255 (660)
Q Consensus 184 ~al~~~p~~~~~~~~~~~~~~~~la~~~~~~g~~~-~A~~~~~~al~~-------~p~~~~~~~~lg~~~~~~g~~~~A~ 255 (660)
-.++......... .......+..++.....-+ .=..+.+++++- .-.++..+..+|..+.+.|++.+|.
T Consensus 78 llvev~~~~~~~~---~~~~~~rl~~l~~~~p~~~~~r~~fi~~ai~WS~~~g~~~~Gdp~LH~~~a~~~~~e~~~~~A~ 154 (312)
T 2wpv_A 78 YLLEVYDLAEVKV---DDISVARLVRLIAELDPSEPNLKDVITGMNNWSIKFSEYKFGDPYLHNTIGSKLLEGDFVYEAE 154 (312)
T ss_dssp HHHHHHHHTTCCC---SHHHHHHHHHHHTTCCTTCTTHHHHHHHHHHHHHHTSSCTTCCHHHHHHHHHHHHHTTCHHHHH
T ss_pred HHHHHHHHcCCCC---CHHHHHHHHHHHHHCCCCCchHHHHHHHHHHHHhhcCCCCCCCHHHHHHHHHHHhhcCCHHHHH
Confidence 3333322211111 1122222333322211100 012233333321 2246788888888888888888888
Q ss_pred HHHH
Q 006120 256 KALE 259 (660)
Q Consensus 256 ~~~~ 259 (660)
.+|-
T Consensus 155 ~H~i 158 (312)
T 2wpv_A 155 RYFM 158 (312)
T ss_dssp HHHH
T ss_pred HHHH
Confidence 7775
No 287
>1wy6_A Hypothetical protein ST1625; helical repeat protein, structural genomics, unknown function; 2.20A {Sulfolobus tokodaii} SCOP: a.118.20.1
Probab=53.95 E-value=54 Score=28.08 Aligned_cols=57 Identities=14% Similarity=0.026 Sum_probs=46.9
Q ss_pred HHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhc
Q 006120 134 VLYEHQLFKEALVSFKRACELQPTDVRPHFRAGNCLYVLGRYREAKEEYLLALEAAE 190 (660)
Q Consensus 134 ~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p 190 (660)
....+|.-++-.+.+...+...+-++..+..+|.+|.+.|+..+|.+++.+|-+..-
T Consensus 100 ~lv~~~KkDqLdki~~~~l~n~~~~~~~l~kia~Ay~Klg~~r~a~eLl~~AC~kG~ 156 (172)
T 1wy6_A 100 ILVIQGKRDKLEEIGREILKNNEVSASILVAIANALRRVGDERDATTLLIEACKKGE 156 (172)
T ss_dssp HHHHTTCHHHHHHHHHHHC--CCSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTC
T ss_pred HHHHhccHhHHHHHHHHHhccCCCChHHHHHHHHHHHHhcchhhHHHHHHHHHHhhh
Confidence 445678888888888887776777899999999999999999999999999987653
No 288
>3ll8_B Calcineurin subunit B type 1; protein-peptide docking, protein targeting, AKA beta-augmentation, calmodulin-binding, membrane, hydrolase; 2.00A {Homo sapiens} PDB: 1mf8_B* 2p6b_B 1aui_B 1m63_B* 1tco_B*
Probab=52.43 E-value=20 Score=30.42 Aligned_cols=102 Identities=15% Similarity=0.348 Sum_probs=56.7
Q ss_pred HHHHhhhhccCCCcccccchhhhhhhcccC-CCCHHHHHHhhhhhhcccccCCCCccchhccHHHHHHHhHHHhccCCCc
Q 006120 462 INERILSVLDETGSARVDLGMFYAILAPIC-SGSPEKRKRVAFDALLWRPVNEGSTQVRKVDAVRYIKLLRAVYIPSHGV 540 (660)
Q Consensus 462 l~~~~l~~hDr~g~~~fev~~y~~~~~~~~-~~~~~~r~r~~~d~~~~~~~~~~~a~~i~~D~~~~l~dL~~~~~~~~~~ 540 (660)
.+..++...|.+|+|.+..--|...+.... .......++..+..+ +.++. ..|-..+...++..+...-.+...+
T Consensus 39 ~~~~~~~~~D~~~~g~i~~~ef~~~~~~~~~~~~~~~~~~~~F~~~---D~d~~-G~i~~~e~~~~l~~~~~~~~~~~~~ 114 (155)
T 3ll8_B 39 LVQRVIDIFDTDGNGEVDFKEFIEGVSQFSVKGDKEQKLRFAFRIY---DMDKD-GYISNGELFQVLKMMVGNNLKDTQL 114 (155)
T ss_dssp THHHHHHHHCTTCSSSBCHHHHHHHHGGGCSSCCHHHHHHHHHHHH---CTTCS-SCBCHHHHHHHHHHHHGGGSCHHHH
T ss_pred HHHHHHHHHCCCCCCcCcHHHHHHHHHHHcccCCHHHHHHHHHHHh---CCCCC-CcCcHHHHHHHHHHHhccCCCHHHH
Confidence 455688888998777665444433344332 223445666666622 22222 2444555555555532222233333
Q ss_pred hhhhhh----hccCCCcccchhHHhhhccCC
Q 006120 541 SEMMEV----HGEADSSMVSLSEFLVMFDDP 567 (660)
Q Consensus 541 ~~~~~~----~~~~~~~~~~~~~~~~~~~~~ 567 (660)
.+++.. -..++.-.|+|.||+.++...
T Consensus 115 ~~~~~~~~~~~D~~~dg~i~~~eF~~~~~~~ 145 (155)
T 3ll8_B 115 QQIVDKTIINADKDGDGRISFEEFCAVVGGL 145 (155)
T ss_dssp HHHHHHHHHHHCTTSSSSBCHHHHHHHHGGG
T ss_pred HHHHHHHHHHhCCCCCCcCcHHHHHHHHhcc
Confidence 445554 455666689999999998843
No 289
>1x61_A Thyroid receptor interacting protein 6; LIM domain, OPA-interacting protein 1, zyxin related protein 1 (ZRP-1), structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=50.91 E-value=4.6 Score=30.02 Aligned_cols=41 Identities=34% Similarity=0.614 Sum_probs=31.3
Q ss_pred hcccCccccCCC-cccccccccccccccccccccccccccccc
Q 006120 579 KLEAGDRNRHGR-HVCSVCRYPIIGSRFKEMKSHFSLCSQCYS 620 (660)
Q Consensus 579 ~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 620 (660)
.+.+.|+.-|.. -+|++|+-++.|.+|.+... --.|..||.
T Consensus 21 ~~~a~~~~~H~~CF~C~~C~~~L~~~~~~~~~~-~~yC~~cy~ 62 (72)
T 1x61_A 21 GVVALDRVFHVGCFVCSTCRAQLRGQHFYAVER-RAYCEGCYV 62 (72)
T ss_dssp CEECSSSEECTTTCBCSSSCCBCTTSCEEESSS-CEEEHHHHH
T ss_pred EEEECCCeEcccCCcccccCCcCCcCcCEeeCC-eEECHHHHH
Confidence 345677888874 68999999999988977654 467888885
No 290
>2bec_A Calcineurin B homologous protein 2; calcineurin-homologous protein, calcium-binding protein, NHE1 regulating protein; 2.70A {Homo sapiens}
Probab=50.72 E-value=20 Score=32.43 Aligned_cols=97 Identities=20% Similarity=0.326 Sum_probs=51.8
Q ss_pred HHHhhhhccCCCcccccchhhhhhhcccC-----------------CCCHHHHHHhhhhhhcccccCCCCccchhccHHH
Q 006120 463 NERILSVLDETGSARVDLGMFYAILAPIC-----------------SGSPEKRKRVAFDALLWRPVNEGSTQVRKVDAVR 525 (660)
Q Consensus 463 ~~~~l~~hDr~g~~~fev~~y~~~~~~~~-----------------~~~~~~r~r~~~d~~~~~~~~~~~a~~i~~D~~~ 525 (660)
+..++...|.+|+|.+..--|...+.... .......++..|..| +.++. ..|-..+...
T Consensus 63 ~~~l~~~~D~d~dg~i~~~EF~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~F~~~---D~d~d-G~Is~~El~~ 138 (202)
T 2bec_A 63 GDRIIESFFPDGSQRVDFPGFVRVLAHFRPVEDEDTETQDPKKPEPLNSRRNKLHYAFQLY---DLDRD-GKISRHEMLQ 138 (202)
T ss_dssp HHHHHHTTSCSSCCCCCHHHHHHHHGGGSCCCHHHHC-----CCCCTTSHHHHHHHHHHHH---CTTCS-SEECHHHHHH
T ss_pred HHHHHHHhCCCCCCcCcHHHHHHHHHHhcccchhcccccccccccccccHHHHHHHHHHHh---CCCCC-CeEcHHHHHH
Confidence 56788899998777665444433333322 223344666666522 33222 2344444444
Q ss_pred HHHHhHHHhcc---CCCchhhhhh----hccCCCcccchhHHhhhccC
Q 006120 526 YIKLLRAVYIP---SHGVSEMMEV----HGEADSSMVSLSEFLVMFDD 566 (660)
Q Consensus 526 ~l~dL~~~~~~---~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~ 566 (660)
++..+ ++. ...+..++.. -..++.-.|+|.||+.++..
T Consensus 139 ~l~~~---~g~~~~~~~~~~~~~~~~~~~D~d~dG~Is~~EF~~~~~~ 183 (202)
T 2bec_A 139 VLRLM---VGVQVTEEQLENIADRTVQEADEDGDGAVSFVEFTKSLEK 183 (202)
T ss_dssp HHHHS---CCSCCCHHHHHHHHHHHHHHHCSSCSSSEEHHHHHHTTTT
T ss_pred HHHHh---cCCCCCHHHHHHHHHHHHHHcCCCCCCcCcHHHHHHHHHH
Confidence 44433 121 1122334443 34455667999999998884
No 291
>1x68_A FHL5 protein; four-and-A-half LIM protein 5, zinc finger domain, AN actin- interacting protein, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=50.56 E-value=6.4 Score=29.65 Aligned_cols=43 Identities=21% Similarity=0.448 Sum_probs=32.9
Q ss_pred cccCccccCCC-ccccccccccccccccccccccccccccccCCC
Q 006120 580 LEAGDRNRHGR-HVCSVCRYPIIGSRFKEMKSHFSLCSQCYSEGK 623 (660)
Q Consensus 580 ~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 623 (660)
+.+.|+.-|.. -+|++|+-++.|..|-+. ..--.|..||.+-.
T Consensus 24 ~~a~~~~wH~~CF~C~~C~~~L~~~~f~~~-~g~~yC~~cy~~~f 67 (76)
T 1x68_A 24 ICFQDSQWHSECFNCGKCSVSLVGKGFLTQ-NKEIFCQKCGSGMD 67 (76)
T ss_dssp EEETTEEEEGGGCBCTTTCCBCSSSCEEEE-TTEEEETTTTCCCC
T ss_pred EEECCcccCcccCChhhCCCcCCCCceEeE-CCEEECHHHhhhhh
Confidence 55677777864 689999999999999874 44568999997543
No 292
>2k2u_B Alpha trans-inducing protein; VP16, TFIIH, TFB1, activation, transcription, PH domain, protein structure complex, DNA damage, DNA repair; NMR {Human herpesvirus 1} PDB: 2phe_C 2phg_B
Probab=49.90 E-value=5.9 Score=23.91 Aligned_cols=10 Identities=50% Similarity=0.660 Sum_probs=8.6
Q ss_pred hHHhhhccCC
Q 006120 558 SEFLVMFDDP 567 (660)
Q Consensus 558 ~~~~~~~~~~ 567 (660)
-||.+||+|.
T Consensus 18 fEFEQMFtda 27 (35)
T 2k2u_B 18 FEFEQMFTDA 27 (35)
T ss_dssp HHHHHTTSCC
T ss_pred HHHHHHHHHH
Confidence 5899999985
No 293
>1dx8_A Rubredoxin; electron transport, zinc-substitution; NMR {Guillardia theta} SCOP: g.41.5.1 PDB: 1h7v_A
Probab=48.74 E-value=7.6 Score=28.94 Aligned_cols=33 Identities=30% Similarity=0.818 Sum_probs=25.2
Q ss_pred CCCccccccccccc------------cccccccccccccccccccC
Q 006120 588 HGRHVCSVCRYPII------------GSRFKEMKSHFSLCSQCYSE 621 (660)
Q Consensus 588 ~~~~~~~~~~~~~~------------~~~~~~~~~~~~~~~~~~~~ 621 (660)
+....|.+|+|.-+ |.+|.++-..+ .|..|-..
T Consensus 5 m~~y~C~vCGyiYd~~~Gdp~~gi~pGT~f~~lPddw-~CP~Cga~ 49 (70)
T 1dx8_A 5 EGKYECEACGYIYEPEKGDKFAGIPPGTPFVDLSDSF-MCPACRSP 49 (70)
T ss_dssp SSCEEETTTCCEECTTTCCTTTTCCSSCCGGGSCTTC-BCTTTCCB
T ss_pred CceEEeCCCCEEEcCCCCCcccCcCCCCchhhCCCCC-cCCCCCCC
Confidence 45788999999887 56788886554 69999663
No 294
>3ox6_A Calcium-binding protein 1; EF-hand, calcium-sensor; 2.40A {Homo sapiens} PDB: 3ox5_A 2lan_A 2lap_A 2k7b_A 2k7c_A 2k7d_A
Probab=48.13 E-value=16 Score=30.80 Aligned_cols=99 Identities=15% Similarity=0.219 Sum_probs=49.4
Q ss_pred HHHhhhhccCCCcccccchhhhhhhcccCCC-CH----HHHHHhhhhhhcccccCCCCccchhccHHHHHHHhHHHhccC
Q 006120 463 NERILSVLDETGSARVDLGMFYAILAPICSG-SP----EKRKRVAFDALLWRPVNEGSTQVRKVDAVRYIKLLRAVYIPS 537 (660)
Q Consensus 463 ~~~~l~~hDr~g~~~fev~~y~~~~~~~~~~-~~----~~r~r~~~d~~~~~~~~~~~a~~i~~D~~~~l~dL~~~~~~~ 537 (660)
+..++..+|.+|+|.+..--|...+.+.... .. ...++..+..+ +.++. ..|-..+...++..+-..-.+.
T Consensus 49 ~~~l~~~~d~~~~g~i~~~eF~~~~~~~~~~~~~~~~~~~~~~~~F~~~---D~d~~-G~i~~~el~~~l~~~~~~~~~~ 124 (153)
T 3ox6_A 49 LIELSQQINMNLGGHVDFDDFVELMGPKLLAETADMIGVKELRDAFREF---DTNGD-GEISTSELREAMRALLGHQVGH 124 (153)
T ss_dssp HHHHHHHHHTTSTTCCCHHHHHHHHHHHHTTCCHHHHCHHHHHHHHHHH---CTTCS-SSBCHHHHHHHHHHHHSSCCCH
T ss_pred HHHHHHHhCCCCCccCcHHHHHHHHHHHhhccccccccHHHHHHHHHHh---CCCCC-CcCcHHHHHHHHHHHhcCCCCH
Confidence 4456777788776665544443333322111 11 23455555421 22221 3444555555554421111122
Q ss_pred CCchhhhhhhccCCCcccchhHHhhhcc
Q 006120 538 HGVSEMMEVHGEADSSMVSLSEFLVMFD 565 (660)
Q Consensus 538 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 565 (660)
.-+..++..-..++.-.|+|.||+.+++
T Consensus 125 ~~~~~~~~~~d~~~dg~i~~~eF~~~~~ 152 (153)
T 3ox6_A 125 RDIEEIIRDVDLNGDGRVDFEEFVRMMS 152 (153)
T ss_dssp HHHHHHHHHHCSSSSSSBCHHHHHHHTC
T ss_pred HHHHHHHHHhCCCCCCeEeHHHHHHHHh
Confidence 2234455555566677899999998764
No 295
>2v3b_B Rubredoxin 2, rubredoxin; alkane degradation, iron-sulfur protein, oxidoreductase, ELE transfer, electron transport, FAD, NAD, iron; HET: FAD; 2.45A {Pseudomonas aeruginosa}
Probab=47.05 E-value=7 Score=27.57 Aligned_cols=32 Identities=19% Similarity=0.646 Sum_probs=23.8
Q ss_pred CCcccccccccccc------------ccccccccccccccccccC
Q 006120 589 GRHVCSVCRYPIIG------------SRFKEMKSHFSLCSQCYSE 621 (660)
Q Consensus 589 ~~~~~~~~~~~~~~------------~~~~~~~~~~~~~~~~~~~ 621 (660)
....|.+|+|.-++ .+|.++-..+ .|..|-..
T Consensus 2 ~~y~C~~CGyvYd~~~Gdp~~gi~pGt~f~~lP~dw-~CP~Cga~ 45 (55)
T 2v3b_B 2 RKWQCVVCGFIYDEALGLPEEGIPAGTRWEDIPADW-VCPDCGVG 45 (55)
T ss_dssp CEEEETTTCCEEETTTCBTTTTBCTTCCGGGSCTTC-CCTTTCCC
T ss_pred CcEEeCCCCeEECCCcCCcccCcCCCCChhHCCCCC-cCCCCCCC
Confidence 35789999998874 5788886544 69999653
No 296
>1nyp_A Pinch protein; LIM domain, protein recognition, cell adhesion; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3 PDB: 1u5s_B
Probab=46.79 E-value=6 Score=28.79 Aligned_cols=41 Identities=29% Similarity=0.653 Sum_probs=29.6
Q ss_pred cccCccccCCC-ccccccccccccccccccccccccccccccC
Q 006120 580 LEAGDRNRHGR-HVCSVCRYPIIGSRFKEMKSHFSLCSQCYSE 621 (660)
Q Consensus 580 ~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 621 (660)
+.+.++.-|.. -+|++|+-|+.|..|-+... -..|..||.+
T Consensus 20 ~~a~~~~~H~~CF~C~~C~~~L~~~~~~~~~g-~~yC~~~y~~ 61 (66)
T 1nyp_A 20 VNAMGKQWHVEHFVCAKCEKPFLGHRHYERKG-LAYCETHYNQ 61 (66)
T ss_dssp ECCTTSBEETTTCBCTTTCCBCSSSCCEEETT-EEECHHHHHH
T ss_pred EEECccccccCcCEECCCCCCCCCCceEeECC-cEECHHHHHH
Confidence 45667777774 57888998888888876443 3578888853
No 297
>1x4l_A Skeletal muscle LIM-protein 3; LIM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=46.50 E-value=8.9 Score=28.41 Aligned_cols=43 Identities=21% Similarity=0.485 Sum_probs=32.3
Q ss_pred cccCccccCCC-ccccccccccccccccccccccccccccccCCC
Q 006120 580 LEAGDRNRHGR-HVCSVCRYPIIGSRFKEMKSHFSLCSQCYSEGK 623 (660)
Q Consensus 580 ~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 623 (660)
+.+.|+.-|.. -+|+.|+-++.|..|-+. ..--.|..||.+--
T Consensus 24 ~~a~~~~wH~~CF~C~~C~~~L~~~~f~~~-~g~~yC~~c~~~~~ 67 (72)
T 1x4l_A 24 ISFEERQWHNDCFNCKKCSLSLVGRGFLTE-RDDILCPDCGKDIS 67 (72)
T ss_dssp EECSSCEECTTTCBCSSSCCBCTTSCCEEC-SSSEECHHHHHTCC
T ss_pred EEECCcccCcccCEeccCCCcCCCCccEeE-CCEEEChhHcCccc
Confidence 45567788864 689999999999999764 44567999997543
No 298
>2ggz_A Guanylyl cyclase-activating protein 3; EF hand, guanylate cyclase activating protein, GCAP, GCAP3, GCAP-3, lyase activator; 3.00A {Homo sapiens}
Probab=45.30 E-value=18 Score=33.04 Aligned_cols=105 Identities=14% Similarity=0.177 Sum_probs=52.9
Q ss_pred HHHHHhhhhccCCCcccccchhhhhhhcccCCCCHHHHHHhhhhhhcccccCCCCccchhccHHHHHHHhHHHhc-cC--
Q 006120 461 AINERILSVLDETGSARVDLGMFYAILAPICSGSPEKRKRVAFDALLWRPVNEGSTQVRKVDAVRYIKLLRAVYI-PS-- 537 (660)
Q Consensus 461 ~l~~~~l~~hDr~g~~~fev~~y~~~~~~~~~~~~~~r~r~~~d~~~~~~~~~~~a~~i~~D~~~~l~dL~~~~~-~~-- 537 (660)
..+..+|..+|.+++|.+..--|...+...........++..+..+ +.++. ..|-..+...++..+...-+ ..
T Consensus 57 ~~~~~~f~~~D~d~dG~I~~~Ef~~~~~~~~~~~~~~~l~~~F~~~---D~d~~-G~I~~~E~~~~l~~~~~~~~~~~~~ 132 (211)
T 2ggz_A 57 KHIDQVYNTFDTNKDGFVDFLEFIAAVNLIMQEKMEQKLKWYFKLY---DADGN-GSIDKNELLDMFMAVQALNGQQTLS 132 (211)
T ss_dssp HHHHHHHHHHCTTCSSEEEHHHHHHHHHHHSCSSHHHHHHHHHHHH---CTTCS-SSBCHHHHHHHHHHHTTSSCCCSCT
T ss_pred HHHHHHHHHHcCCCCCeEeHHHHHHHHHHhccCchHHHHHHHHHHh---cCCCC-CcCcHHHHHHHHHHHHhhcCCcccc
Confidence 3467788999999877654433322333222334445666665521 22221 23444444444444321100 11
Q ss_pred --CCchhhhhhhccCCCcccchhHHhhhcc-CCCC
Q 006120 538 --HGVSEMMEVHGEADSSMVSLSEFLVMFD-DPDW 569 (660)
Q Consensus 538 --~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~ 569 (660)
.-+..++..--.++.-.|+|.||+.++. +|.+
T Consensus 133 ~~~~~~~~f~~~D~d~dG~I~~~Ef~~~~~~~~~~ 167 (211)
T 2ggz_A 133 PEEFINLVFHKIDINNDGELTLEEFINGMAKDQDL 167 (211)
T ss_dssp HHHHHHHHHHHHCTTCSSSBCHHHHHHHHHTTTTT
T ss_pred HHHHHHHHHHHhCCCCCCCCcHHHHHHHHHhCHHH
Confidence 0123344444445666899999999665 4443
No 299
>2jul_A Calsenilin; EF-hand, calcium, LXXLL, DNA binding protein, dimer, alternative splicing, apoptosis, cytoplasm, endoplasmic reticulum, golgi apparatus; NMR {Mus musculus}
Probab=44.54 E-value=23 Score=33.60 Aligned_cols=101 Identities=15% Similarity=0.262 Sum_probs=54.3
Q ss_pred HHHHHhhhhccCCCcccccchhhhhhhcccCCCCHHHHHHhhhhhhcccccCCCCccchhccHHHHHHHhHHHhcc----
Q 006120 461 AINERILSVLDETGSARVDLGMFYAILAPICSGSPEKRKRVAFDALLWRPVNEGSTQVRKVDAVRYIKLLRAVYIP---- 536 (660)
Q Consensus 461 ~l~~~~l~~hDr~g~~~fev~~y~~~~~~~~~~~~~~r~r~~~d~~~~~~~~~~~a~~i~~D~~~~l~dL~~~~~~---- 536 (660)
..+..+|..+|.+|+|.+..--|...+...........++..+. ..+.++. ..|-..+...++..+-...+.
T Consensus 129 ~~~~~~f~~~D~d~dG~I~~~Ef~~~l~~~~~~~~~~~l~~~F~---~~D~d~d-G~I~~~Ef~~~l~~~~~~~g~~~~~ 204 (256)
T 2jul_A 129 TYAHFLFNAFDADGNGAIHFEDFVVGLSILLRGTVHEKLKWAFN---LYDINKD-GCITKEEMLAIMKSIYDMMGRHTYP 204 (256)
T ss_dssp HHHHHHHHHSSCSCCSEECSHHHHHHHHHHHSCCHHHHHHHHHH---HTCCSSS-SCBCHHHHHHHHHHHHHHCCCCCSC
T ss_pred HHHHHHHHHhccCCCCcCcHHHHHHHHHHHhccChHHHHHHHHH---HhCCCCC-CcCcHHHHHHHHHHHHHHhCCCCCc
Confidence 35667899999998876554444223333223344456666555 1222221 345555555566555433331
Q ss_pred -------CCCchhhhhhhccCCCcccchhHHhhhcc
Q 006120 537 -------SHGVSEMMEVHGEADSSMVSLSEFLVMFD 565 (660)
Q Consensus 537 -------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 565 (660)
..-+..++..--.++.-.|+|.||+.++.
T Consensus 205 ~~~~~~~~~~~~~~f~~~D~d~dG~Is~~Ef~~~~~ 240 (256)
T 2jul_A 205 ILREDAPLEHVERFFQKMDRNQDGVVTIDEFLETCQ 240 (256)
T ss_dssp CSCCCCHHHHHHHHHHHSCCSTTCSBCHHHHHHHHH
T ss_pred ccchhhHHHHHHHHHHHHCCCCCCcEeHHHHHHHHH
Confidence 11123333333345666899999999655
No 300
>2d8z_A Four and A half LIM domains 2; skeletal muscle LIM-protein 3, LIM-domain protein DRAL, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=44.47 E-value=6.7 Score=28.88 Aligned_cols=41 Identities=27% Similarity=0.750 Sum_probs=30.4
Q ss_pred cccCccccCCC-ccccccccccccccccccccccccccccccC
Q 006120 580 LEAGDRNRHGR-HVCSVCRYPIIGSRFKEMKSHFSLCSQCYSE 621 (660)
Q Consensus 580 ~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 621 (660)
+.+.++.-|.. -+|++|+-|+.|..|.+.. .--.|..||.+
T Consensus 20 ~~a~~~~~H~~CF~C~~C~~~L~~~~~~~~~-~~~yC~~cy~~ 61 (70)
T 2d8z_A 20 VTYREQPWHKECFVCTACRKQLSGQRFTARD-DFAYCLNCFCD 61 (70)
T ss_dssp EESSSSEEETTTSBCSSSCCBCTTSCCEESS-SSEECHHHHHH
T ss_pred EEECccccCCCCCccCCCCCcCCcCceEeeC-CeEECHHHHHH
Confidence 45667777763 5789999999988888654 44578888853
No 301
>2cur_A Skeletal muscle LIM-protein 1; four and A half LIM domains protein 1, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=44.01 E-value=6.5 Score=28.89 Aligned_cols=40 Identities=28% Similarity=0.683 Sum_probs=30.0
Q ss_pred cccCccccCCC-cccccccccccccccccccccccccccccc
Q 006120 580 LEAGDRNRHGR-HVCSVCRYPIIGSRFKEMKSHFSLCSQCYS 620 (660)
Q Consensus 580 ~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 620 (660)
+.+.++.-|.. -+|++|+-|+.|.+|-+.. .--.|..||.
T Consensus 20 ~~a~~~~~H~~CF~C~~C~~~L~~~~~~~~~-~~~yC~~cy~ 60 (69)
T 2cur_A 20 ITYQDQPWHADCFVCVTCSKKLAGQRFTAVE-DQYYCVDCYK 60 (69)
T ss_dssp EEETTEEECTTTTBCTTTCCBCTTSCEEECS-SCEEEHHHHH
T ss_pred EEECccccccCcCEECCCCCCCCCCccEeEC-CEEECHHHhH
Confidence 45667777763 5789999999988887754 4567888885
No 302
>2l2e_A Calcium-binding protein NCS-1; NCS1P, myristoylated, metal binding protein; HET: MYR; NMR {Schizosaccharomyces pombe}
Probab=43.98 E-value=31 Score=30.57 Aligned_cols=102 Identities=15% Similarity=0.234 Sum_probs=54.7
Q ss_pred HHHHHhhhhccCCCcccccchhhhhhhcccCCCCHHHHHHhhhhhhcccccCCCCccchhccHHHHHHHhHHHhcc----
Q 006120 461 AINERILSVLDETGSARVDLGMFYAILAPICSGSPEKRKRVAFDALLWRPVNEGSTQVRKVDAVRYIKLLRAVYIP---- 536 (660)
Q Consensus 461 ~l~~~~l~~hDr~g~~~fev~~y~~~~~~~~~~~~~~r~r~~~d~~~~~~~~~~~a~~i~~D~~~~l~dL~~~~~~---- 536 (660)
..+..+|..+|.+|+|....-=|...+.........+.++..+.. .+.++. ..|-.++...++..+....+.
T Consensus 63 ~~~~~~f~~~D~d~~G~i~~~ef~~~~~~~~~~~~~~~~~~~f~~---~D~d~~-G~i~~~e~~~~~~~~~~~~g~~~~~ 138 (190)
T 2l2e_A 63 AFAEYVFNVFDADKNGYIDFKEFICALSVTSRGELNDKLIWAFQL---YDLDNN-GLISYDEMLRIVDAIYKMVGSMVKL 138 (190)
T ss_dssp HHHHHHHHHHCSSSTTCEEHHHHHHHHTTSSCSCSHHHHHHHHHH---HCTTSC-SCBCHHHHHHHHHHHHHHHHHHSCC
T ss_pred HHHHHHHHHhcCCCCCeEeHHHHHHHHHHHcCCCHHHHHHHHHhH---ccCCCC-CcCcHHHHHHHHHHHHHHhccccCc
Confidence 456678999999988765554443333333233334456555541 122221 245555555555554322221
Q ss_pred -------CCCchhhhhhhccCCCcccchhHHhhhccC
Q 006120 537 -------SHGVSEMMEVHGEADSSMVSLSEFLVMFDD 566 (660)
Q Consensus 537 -------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 566 (660)
..-+.+++..--.++.-.|+|.||+.++..
T Consensus 139 ~~~~~~~~~~~~~~f~~~D~d~dG~I~~~Ef~~~~~~ 175 (190)
T 2l2e_A 139 PEDEDTPEKRVNKIFNMMDKNKDGQLTLEEFCEGSKR 175 (190)
T ss_dssp CSSCCCTHHHHHHHHHHHTCCSSCCBCHHHHHHHHHT
T ss_pred ccccccHHHHHHHHHHHhCCCCCCcCcHHHHHHHHHh
Confidence 111233444444566668999999997764
No 303
>2cuq_A Four and A half LIM domains 3; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=43.35 E-value=7.7 Score=29.45 Aligned_cols=49 Identities=22% Similarity=0.527 Sum_probs=32.8
Q ss_pred cchhhhhhhhcccCccccCCC-ccccccccccccccccccccccccccccccC
Q 006120 570 GFGIMSTLMKLEAGDRNRHGR-HVCSVCRYPIIGSRFKEMKSHFSLCSQCYSE 621 (660)
Q Consensus 570 ~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 621 (660)
+-.|... .+.+.++.-|.. -+|++|+-|+.|.+|-+. ..-..|..||.+
T Consensus 22 ~~~I~~~--~v~a~~~~~H~~CF~C~~C~~~L~~~~~~~~-~~~~yC~~cy~~ 71 (80)
T 2cuq_A 22 SKTLTQG--GVTYRDQPWHRECLVCTGCQTPLAGQQFTSR-DEDPYCVACFGE 71 (80)
T ss_dssp CCCCCSC--CEESSSSEECTTTCBCSSSCCBCTTCCEEEC-SSSEEEHHHHHH
T ss_pred CCEecCc--EEEECCchhhhhhCCcccCCCcCCCCeeEeE-CCEEECHHHHHH
Confidence 3344443 356777777763 578888888888888764 344678888854
No 304
>2dlo_A Thyroid receptor-interacting protein 6; LIM domain, OPA-interacting protein 1, zyxin related protein 1 (ZRP-1), structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=42.86 E-value=7.4 Score=29.71 Aligned_cols=51 Identities=20% Similarity=0.285 Sum_probs=31.6
Q ss_pred CcchhhhhhhhcccCccccCCC-ccccccccccccccccccccccccccccccC
Q 006120 569 WGFGIMSTLMKLEAGDRNRHGR-HVCSVCRYPIIGSRFKEMKSHFSLCSQCYSE 621 (660)
Q Consensus 569 ~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 621 (660)
.+-.|... .+.+.++.-|.. -+|++|+-|+.|..|-.....--.|..||.+
T Consensus 21 C~~~I~~~--~~~a~~~~~H~~CF~C~~C~~~L~~~~f~~~~~g~~yC~~cy~~ 72 (81)
T 2dlo_A 21 CSQPILDR--ILRAMGKAYHPGCFTCVVCHRGLDGIPFTVDATSQIHCIEDFHR 72 (81)
T ss_dssp TCCBCCSC--CEEETTEEECTTTCBCSSSCCBCTTSCEECCTTCCCEEHHHHHH
T ss_pred CCCeecce--eEEECCccccHHhcCcccCCCccCCCeeEECCCCEEECHHHHHH
Confidence 33444433 345667777763 4778888888888776543344567777743
No 305
>2w2u_A Hypothetical P60 katanin; hydrolase transport complex, nucleotide-binding, ESCRT, AAA-ATPase, cytokinesis, ATP-binding; 2.20A {Sulfolobus acidocaldarius}
Probab=42.13 E-value=38 Score=26.07 Aligned_cols=26 Identities=19% Similarity=0.262 Sum_probs=17.4
Q ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHH
Q 006120 204 YVNLGIALEGEGMVLSACEYYRESAI 229 (660)
Q Consensus 204 ~~~la~~~~~~g~~~~A~~~~~~al~ 229 (660)
+...|.-.-..|++++|+.+|.++++
T Consensus 22 lv~~Ave~D~~g~y~eAl~lY~~aie 47 (83)
T 2w2u_A 22 YAINAVKADKEGNAEEAITNYKKAIE 47 (83)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhccHHHHHHHHHHHHH
Confidence 33444445567888888888877655
No 306
>1s24_A Rubredoxin 2; electron transport; NMR {Pseudomonas oleovorans} SCOP: g.41.5.1
Probab=42.11 E-value=8.4 Score=29.98 Aligned_cols=32 Identities=19% Similarity=0.541 Sum_probs=25.4
Q ss_pred CCCcccccccccccc------------cccccccccccccccccc
Q 006120 588 HGRHVCSVCRYPIIG------------SRFKEMKSHFSLCSQCYS 620 (660)
Q Consensus 588 ~~~~~~~~~~~~~~~------------~~~~~~~~~~~~~~~~~~ 620 (660)
+....|.+|+|.-++ .+|.++-..+ .|..|-.
T Consensus 33 m~~y~C~vCGyvYD~~~Gdp~~gI~pGT~fedlPddW-~CPvCga 76 (87)
T 1s24_A 33 YLKWICITCGHIYDEALGDEAEGFTPGTRFEDIPDDW-CCPDCGA 76 (87)
T ss_dssp CCEEEETTTTEEEETTSCCTTTTCCSCCCGGGCCTTC-CCSSSCC
T ss_pred CceEECCCCCeEecCCcCCcccCcCCCCChhHCCCCC-CCCCCCC
Confidence 457899999998884 6898886654 6999975
No 307
>2ehe_A Four and A half LIM domains 3; FHL-3, skeletal muscle LIM- protein 2, SLIM 2, FHL3, SLIM2, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=40.98 E-value=13 Score=28.30 Aligned_cols=41 Identities=27% Similarity=0.517 Sum_probs=28.6
Q ss_pred cccCccccCCC-ccccccccccccccccccccccccccccccC
Q 006120 580 LEAGDRNRHGR-HVCSVCRYPIIGSRFKEMKSHFSLCSQCYSE 621 (660)
Q Consensus 580 ~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 621 (660)
+.+.++.-|.. -+|++|+-|+.|..|-+.. .--+|..||.+
T Consensus 32 ~~a~~~~~H~~CF~C~~C~~~L~~~~f~~~~-~~~~C~~c~~~ 73 (82)
T 2ehe_A 32 LFYEDRHFHEGCFRCCRCQRSLADEPFTCQD-SELLCNDCYCS 73 (82)
T ss_dssp CCCSSCCCBTTTSBCTTTCCBCSSCCEEEET-TEEEETTTSSC
T ss_pred EEeCCccccccCCeecCCCCccCCCccEeeC-CEEECHHHHhh
Confidence 44567777763 4788888888888886543 34568888864
No 308
>3ax2_A Mitochondrial import receptor subunit TOM20 homol; protein-protein complex, membrane protein-transport protein; 1.90A {Rattus norvegicus} PDB: 2v1s_A 3awr_A 2v1t_A 3ax5_A 3ax3_A
Probab=40.63 E-value=67 Score=23.98 Aligned_cols=32 Identities=16% Similarity=0.268 Sum_probs=20.4
Q ss_pred HHHHHHHHHCCCHHHHHHHHHHHHHhCCCcHH
Q 006120 205 VNLGIALEGEGMVLSACEYYRESAILCPTHFR 236 (660)
Q Consensus 205 ~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~ 236 (660)
..+|..+...|++++|..+|-+|+...|+-..
T Consensus 21 V~~GE~L~~~g~~~~~~~hf~nAl~Vc~qP~~ 52 (73)
T 3ax2_A 21 IQLGEELLAQGDYEKGVDHLTNAIAVCGQPQQ 52 (73)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHTCSSCHH
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHHHcCCHHH
Confidence 44566666666777777767676666655443
No 309
>1jba_A GCAP-2, protein (guanylate cyclase activating protein 2); EF-hand, calcium-binding protein, guanylyl cyclase regulation, lyase; NMR {Bos taurus} SCOP: a.39.1.5
Probab=40.61 E-value=34 Score=30.85 Aligned_cols=102 Identities=16% Similarity=0.259 Sum_probs=54.1
Q ss_pred HHHHHhhhhccCCCcccccchhhhhhhcccCCCCHHHHHHhhhhhhcccccCCCCccchhccHHHHHHHhHHHhc-----
Q 006120 461 AINERILSVLDETGSARVDLGMFYAILAPICSGSPEKRKRVAFDALLWRPVNEGSTQVRKVDAVRYIKLLRAVYI----- 535 (660)
Q Consensus 461 ~l~~~~l~~hDr~g~~~fev~~y~~~~~~~~~~~~~~r~r~~~d~~~~~~~~~~~a~~i~~D~~~~l~dL~~~~~----- 535 (660)
..+..+|..+|.+|+|.+..-=|...+...........++..+..+ +.++ ...|-..+...++..+....+
T Consensus 59 ~~~~~~f~~~D~d~~G~i~~~Ef~~~~~~~~~~~~~~~~~~~F~~~---D~d~-~G~I~~~E~~~~l~~~~~~~g~~~~~ 134 (204)
T 1jba_A 59 QYVEAMFRAFDTNGDNTIDFLEYVAALNLVLRGTLEHKLKWTFKIY---DKDR-NGCIDRQELLDIVESIYKLKKACSVE 134 (204)
T ss_dssp HHHHHHHHHHCCSSSSEECHHHHHHHHHHHSSCCCTHHHHHHHHHH---CSSC-SSCBCHHHHHHHHHHHHHHHHHSSCC
T ss_pred HHHHHHHHHHcCCCCCeEeHHHHHHHHHHHccCCHHHHHHHHHHHh---CCCC-CCcCcHHHHHHHHHHHHHHhCCCCcc
Confidence 4566788889999877655433422333222223344565555521 2222 134555555566665533222
Q ss_pred -----------cCCCchhhhhhhccCCCcccchhHHhhhccC
Q 006120 536 -----------PSHGVSEMMEVHGEADSSMVSLSEFLVMFDD 566 (660)
Q Consensus 536 -----------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 566 (660)
+..-+..++..--.++.-.|+|.||+.++..
T Consensus 135 ~~~~~~g~~~~~~~~~~~~f~~~D~d~dG~Is~~Ef~~~~~~ 176 (204)
T 1jba_A 135 VEAEQQGKLLTPEEVVDRIFLLVDENGDGQLSLNEFVEGARR 176 (204)
T ss_dssp TTSSTTTCCCCHHHHHHHHHHHHCCSCCSCBCHHHHHHHHTT
T ss_pred ccccccCchhhHHHHHHHHHHHhCCCCCCeEcHHHHHHHHHc
Confidence 0011233444444566668999999997664
No 310
>4g9i_A Hydrogenase maturation protein HYPF; zinc finger, ATP binding, carbamoyla transferase; 4.50A {Thermococcus kodakarensis}
Probab=40.35 E-value=9.4 Score=43.00 Aligned_cols=47 Identities=26% Similarity=0.490 Sum_probs=31.0
Q ss_pred ccCccc-cCCCccccccc--cccccc----cccccccccccccccccCCCCCCC
Q 006120 581 EAGDRN-RHGRHVCSVCR--YPIIGS----RFKEMKSHFSLCSQCYSEGKVPPT 627 (660)
Q Consensus 581 ~~~~~~-~~~~~~~~~~~--~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~ 627 (660)
.|+||+ ||--++|..|+ |.||-. |=.-+-+.|.+|..|..|=+=|.+
T Consensus 118 dp~~rry~ypF~nCt~CGPR~tii~~lPYDR~~TsM~~F~mC~~C~~EY~dp~d 171 (772)
T 4g9i_A 118 DPTNKRYMYPFIVCTNCGPRFTIIEDLPYDRENTTMKEFPMCDFCRSEYEDPLN 171 (772)
T ss_dssp STTSTTTTCTTCCCTTSSCCGGGCCSSSCCGGGSGGGGSCCCHHHHHHHHCSSS
T ss_pred CCCCCccCCccccCCCCCchhhhhhcCCCCCCCCcCCCCCCChhHHHHhCCCCC
Confidence 366754 66789999992 333321 334456789999999877555543
No 311
>2v6y_A AAA family ATPase, P60 katanin; MIT, VPS4, archaea, AAA-ATPase, ATP-binding, microtubule INT and trafficking domain, nucleotide-binding; HET: SRT; 2.40A {Sulfolobus solfataricus} PDB: 2v6y_B*
Probab=40.32 E-value=41 Score=25.80 Aligned_cols=22 Identities=27% Similarity=0.483 Sum_probs=14.7
Q ss_pred HHHHHHCCCHHHHHHHHHHHHH
Q 006120 208 GIALEGEGMVLSACEYYRESAI 229 (660)
Q Consensus 208 a~~~~~~g~~~~A~~~~~~al~ 229 (660)
|.-.-..|++++|+.+|.++++
T Consensus 18 Ave~D~~g~y~eAl~lY~~aie 39 (83)
T 2v6y_A 18 AVKADKEGKVEDAITYYKKAIE 39 (83)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHhccHHHHHHHHHHHHH
Confidence 3334456888888888777654
No 312
>3t5x_A PCI domain-containing protein 2; PCI, mRNA nuclear export, transcription; 2.12A {Homo sapiens}
Probab=39.98 E-value=66 Score=29.41 Aligned_cols=33 Identities=21% Similarity=0.048 Sum_probs=19.0
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC
Q 006120 125 FDGHMAIGRVLYEHQLFKEALVSFKRACELQPT 157 (660)
Q Consensus 125 ~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~ 157 (660)
...++.+|..++.+++|.+|.+.+..|+...|.
T Consensus 14 v~Y~YYlGr~~~~~~~y~~A~~~L~~A~~~~~~ 46 (203)
T 3t5x_A 14 VTYKYYVGRKAMFDSDFKQAEEYLSFAFEHCHR 46 (203)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSCT
T ss_pred HHHHHHHHHHHHHHhCHHHHHHHHHHHHHHCCH
Confidence 344555666666666666666666666655554
No 313
>2egq_A FHL1 protein; LIM domain, four and A half LIM domains protein 1, skeletal muscle LIM- protein 1, SLIM 1, structural genomics NPPSFA; NMR {Homo sapiens}
Probab=38.69 E-value=6.3 Score=29.72 Aligned_cols=39 Identities=18% Similarity=0.416 Sum_probs=20.9
Q ss_pred cccCccccCCC-ccccccccccccccccccccccccccccc
Q 006120 580 LEAGDRNRHGR-HVCSVCRYPIIGSRFKEMKSHFSLCSQCY 619 (660)
Q Consensus 580 ~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 619 (660)
+.+.|+.-|.. -+|++|+-|+.|..|-+... --.|..||
T Consensus 35 ~~a~~~~~H~~CF~C~~C~~~L~~~~f~~~~~-~~yC~~cy 74 (77)
T 2egq_A 35 VAYEGQSWHDYCFHCKKCSVNLANKRFVFHQE-QVYCPDCA 74 (77)
T ss_dssp EEETTEEEETTTCBCSSSCCBCTTSCCCEETT-EECCHHHH
T ss_pred EEECcceeCcccCEehhcCCCCCCCccEeECC-EEEChHHh
Confidence 34445555542 45666666666666654332 24566665
No 314
>2ijq_A Hypothetical protein; structural genomics, PSI, protein structure initiative, NEW YORK SGX research center for structural genomics; 1.88A {Haloarcula marismortui} SCOP: a.246.2.1
Probab=38.09 E-value=93 Score=27.26 Aligned_cols=68 Identities=13% Similarity=0.044 Sum_probs=45.7
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHHhccCCCchhchHHHHH-HHHHHHHHHCCCHHHHHHHHHHHHHh
Q 006120 163 FRAGNCLYVLGRYREAKEEYLLALEAAETGGNQWAYLLPQIY-VNLGIALEGEGMVLSACEYYRESAIL 230 (660)
Q Consensus 163 ~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~-~~la~~~~~~g~~~~A~~~~~~al~~ 230 (660)
+..+..++..|+|-+|-+.++.+....+........+...+. ...|....+.|+..-|...+.+++..
T Consensus 36 ~~~~i~lFn~g~yfeaHEvLEe~W~~~~~~~~er~~lqGLIQ~lAvAl~H~~rgN~~GA~~ll~~Al~~ 104 (161)
T 2ijq_A 36 VVHGVRLYNSGEFHESHDCFEDEWYNYGRGNTESKFLHGMVQVAAGAYKHFDFEDDDGMRSLFRTSLQY 104 (161)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHTTTTCSSSHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhCCCchHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHH
Confidence 455667777788888888888888766543112211133444 44556667789999999999988764
No 315
>1s6c_A KV4 potassium channel-interacting protein kchip1B; EF-hand, transport protein; 2.00A {Rattus norvegicus} SCOP: a.39.1.5 PDB: 2nz0_A 2i2r_E
Probab=38.07 E-value=35 Score=29.96 Aligned_cols=102 Identities=17% Similarity=0.289 Sum_probs=53.2
Q ss_pred HHHHHhhhhccCCCcccccchhhhhhhcccCCCCHHHHHHhhhhhhcccccCCCCccchhccHHHHHHHhHHHhccC---
Q 006120 461 AINERILSVLDETGSARVDLGMFYAILAPICSGSPEKRKRVAFDALLWRPVNEGSTQVRKVDAVRYIKLLRAVYIPS--- 537 (660)
Q Consensus 461 ~l~~~~l~~hDr~g~~~fev~~y~~~~~~~~~~~~~~r~r~~~d~~~~~~~~~~~a~~i~~D~~~~l~dL~~~~~~~--- 537 (660)
..+..+|..+|.+|+|....-=|...+...........++..+.. .+.++. ..|-..+...++..+....+..
T Consensus 56 ~~~~~~f~~~D~d~~g~i~~~Ef~~~~~~~~~~~~~~~~~~~f~~---~D~d~~-G~i~~~e~~~~~~~~~~~~g~~~~~ 131 (183)
T 1s6c_A 56 TYAHYLFNAFDTTQTGSVKFEDFVTALSILLRGTVHEKLRWTFNL---YDINKD-GYINKEEMMDIVKAIYDMMGKYTYP 131 (183)
T ss_dssp HHHHHHHHHHCTTCSSCEEHHHHHHHHHHHHHCCHHHHHHHHHHH---HCTTCS-SCEEHHHHHHHHHHHHHHTC-----
T ss_pred HHHHHHHHHhCCCCCCcEeHHHHHHHHHHHcCCCHHHHHHHHHHH---hCCCCC-CeEcHHHHHHHHHHHHHHhccccCc
Confidence 345668888999877765543332222222222334456555551 122221 3455555555565553332311
Q ss_pred --------CCchhhhhhhccCCCcccchhHHhhhccC
Q 006120 538 --------HGVSEMMEVHGEADSSMVSLSEFLVMFDD 566 (660)
Q Consensus 538 --------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 566 (660)
.-+.+++..--.++.-.|+|.||+.++..
T Consensus 132 ~~~~~~~~~~~~~~f~~~D~d~dG~i~~~Ef~~~~~~ 168 (183)
T 1s6c_A 132 VLKEDTPRQHVDVFFQKMDKNKDGIVTLDEFLESXQE 168 (183)
T ss_dssp ------CHHHHHHHHHHHCTTCSSEECHHHHHHHTTS
T ss_pred CccHHHHHHHHHHHHHHhCCCCCCcEeHHHHHHHHhc
Confidence 11233444444566668999999997764
No 316
>3ax2_A Mitochondrial import receptor subunit TOM20 homol; protein-protein complex, membrane protein-transport protein; 1.90A {Rattus norvegicus} PDB: 2v1s_A 3awr_A 2v1t_A 3ax5_A 3ax3_A
Probab=36.68 E-value=1.3e+02 Score=22.41 Aligned_cols=34 Identities=9% Similarity=0.159 Sum_probs=26.6
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHH
Q 006120 128 HMAIGRVLYEHQLFKEALVSFKRACELQPTDVRP 161 (660)
Q Consensus 128 ~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~ 161 (660)
...+|..+...|++++|..+|-+|+...|+-...
T Consensus 20 eV~~GE~L~~~g~~~~~~~hf~nAl~Vc~qP~~L 53 (73)
T 3ax2_A 20 EIQLGEELLAQGDYEKGVDHLTNAIAVCGQPQQL 53 (73)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHTCSSCHHH
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHHcCCHHHH
Confidence 4567888888888888888888888888765443
No 317
>2lmt_A Calmodulin-related protein 97A; spermatogenesis, metal binding protein; NMR {Drosophila melanogaster} PDB: 2lmu_A 2lmv_A
Probab=35.22 E-value=24 Score=30.03 Aligned_cols=98 Identities=14% Similarity=0.238 Sum_probs=49.1
Q ss_pred HHHhhhhccCCCcccccchhhhhhhcccC-CCCHHHHHHhhhhhhcccccCCCCccchhccHHHHHHHhHHHhccCCCch
Q 006120 463 NERILSVLDETGSARVDLGMFYAILAPIC-SGSPEKRKRVAFDALLWRPVNEGSTQVRKVDAVRYIKLLRAVYIPSHGVS 541 (660)
Q Consensus 463 ~~~~l~~hDr~g~~~fev~~y~~~~~~~~-~~~~~~r~r~~~d~~~~~~~~~~~a~~i~~D~~~~l~dL~~~~~~~~~~~ 541 (660)
+..++...|.+|+|.....-|...+.... .....+.++.+|..| +.++. ..|-..+...++..+-. -.+...+.
T Consensus 48 ~~~~~~~~d~~~~g~i~~~ef~~~~~~~~~~~~~~~~l~~aF~~~---D~d~~-G~I~~~El~~~l~~~g~-~~~~~e~~ 122 (148)
T 2lmt_A 48 LQDLIAEAENNNNGQLNFTEFCGIMAKQMRETDTEEEMREAFKIF---DRDGD-GFISPAELRFVMINLGE-KVTDEEID 122 (148)
T ss_dssp HHHHHHHHHTTSTTEEEHHHHHHHHHHTTTTTTTHHHHHHHHHHH---HSSCS-SEECHHHHHHHHHHHTC-CCCHHHHH
T ss_pred HHHHHHhcccCCCCcccHHHHHHHHHHHhcccCcHHHHHHHHHHH---CCCCc-CcCcHHHHHHHHHHcCc-cccHHHHH
Confidence 34566677887666555443422233222 223345677666622 22222 23444444444443321 11112234
Q ss_pred hhhhhhccCCCcccchhHHhhhcc
Q 006120 542 EMMEVHGEADSSMVSLSEFLVMFD 565 (660)
Q Consensus 542 ~~~~~~~~~~~~~~~~~~~~~~~~ 565 (660)
.++..--.++.-.|||.||+.|++
T Consensus 123 ~l~~~~D~d~dG~I~~~EF~~~m~ 146 (148)
T 2lmt_A 123 EMIREADFDGDGMINYEEFVWMIS 146 (148)
T ss_dssp HHHHHHCCSCCSSEEHHHHHHHHT
T ss_pred HHHHHhCCCCCCeEeHHHHHHHHh
Confidence 455544456666899999999875
No 318
>3t5x_A PCI domain-containing protein 2; PCI, mRNA nuclear export, transcription; 2.12A {Homo sapiens}
Probab=34.77 E-value=1e+02 Score=28.08 Aligned_cols=57 Identities=16% Similarity=0.098 Sum_probs=40.7
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhccCCCchhchHHHHHHHHHHHHHHCCCHH
Q 006120 159 VRPHFRAGNCLYVLGRYREAKEEYLLALEAAETGGNQWAYLLPQIYVNLGIALEGEGMVL 218 (660)
Q Consensus 159 ~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~la~~~~~~g~~~ 218 (660)
....+.+|.++...++|.+|.+.+..|+...|...... ...++..+--+-.-+|+..
T Consensus 14 v~Y~YYlGr~~~~~~~y~~A~~~L~~A~~~~~~~~~~~---k~~IL~yLIp~~Ll~G~iP 70 (203)
T 3t5x_A 14 VTYKYYVGRKAMFDSDFKQAEEYLSFAFEHCHRSSQKN---KRMILIYLLPVKMLLGHMP 70 (203)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSCTTCHHH---HHHHHHHHHHHHHHTTCEE
T ss_pred HHHHHHHHHHHHHHhCHHHHHHHHHHHHHHCCHhHHHH---HHHHHHHHHHHHHHcCCCC
Confidence 46788999999999999999999999999988643222 2334444444444556643
No 319
>3ubw_A 14-3-3E, 14-3-3 protein epsilon; adapter protein, signaling protein, signaling protein-protei complex; HET: SEP; 1.90A {Homo sapiens}
Probab=34.52 E-value=3.1e+02 Score=26.04 Aligned_cols=47 Identities=23% Similarity=0.384 Sum_probs=31.0
Q ss_pred HHHHHHHHHHHH-----hCCCCHH---HHHHHHHHHHHhcCCCHHHHHHHHHHHHc
Q 006120 286 ERAIEVFQKAID-----LKPGHVD---ALYNLGGLYMDLGAGETEEAKKALKEALK 333 (660)
Q Consensus 286 ~~A~~~~~~al~-----~~p~~~~---a~~~La~~~~~~~~g~~~eA~~~~~~al~ 333 (660)
+.|...|++|.. +.|.+|- ...+.+..|... .++.++|....++|+.
T Consensus 173 e~a~~aY~~A~~iA~~~L~pThPirLGLaLNfSVFyYEI-ln~p~~Ac~LAk~AFd 227 (261)
T 3ubw_A 173 ENSLVAYKAASDIAMTELPPTHPIRLGLALNFSVFYYEI-LNSPDRACRLAKAAFD 227 (261)
T ss_dssp HHHHHHHHHHHHHHHHHSCTTCHHHHHHHHHHHHHHHHT-SCCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhhCCCCCcHHHHHHHHHHHHHHHH-cCCHHHHHHHHHHHHH
Confidence 556677777765 3577753 344555566653 2899999888877765
No 320
>2dar_A PDZ and LIM domain protein 5; enigma homolog protein, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=34.27 E-value=12 Score=29.12 Aligned_cols=41 Identities=27% Similarity=0.474 Sum_probs=27.9
Q ss_pred cccCccccCCC-ccccccccccccccccccccccccccccccC
Q 006120 580 LEAGDRNRHGR-HVCSVCRYPIIGSRFKEMKSHFSLCSQCYSE 621 (660)
Q Consensus 580 ~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 621 (660)
+.+.++.-|-. -+|..|+-++.|..|-+.. .--.|..||.+
T Consensus 40 v~a~~~~~H~~CF~C~~C~~~L~~~~f~~~~-g~~yC~~cy~~ 81 (90)
T 2dar_A 40 LVALGKSWHPEEFNCAHCKNTMAYIGFVEEK-GALYCELCYEK 81 (90)
T ss_dssp EEETTEEECTTTCBCSSSCCBCSSSCBEESS-SCEECHHHHHH
T ss_pred EEECCccccccCCccCCCCCCCCCCEeEeEC-CEEECHHHHHH
Confidence 34667777763 5788888888887786533 34568888754
No 321
>1fpw_A Yeast frequenin, calcium-binding protein NCS-1; EF-hand, metal binding protein; NMR {Saccharomyces cerevisiae} SCOP: a.39.1.5 PDB: 2ju0_A
Probab=33.53 E-value=42 Score=29.62 Aligned_cols=101 Identities=13% Similarity=0.236 Sum_probs=51.5
Q ss_pred HHHHhhhhccCCCcccccchhhhhhhcccCCCCHHHHHHhhhhhhcccccCCCCccchhccHHHHHHHhHHHhccC----
Q 006120 462 INERILSVLDETGSARVDLGMFYAILAPICSGSPEKRKRVAFDALLWRPVNEGSTQVRKVDAVRYIKLLRAVYIPS---- 537 (660)
Q Consensus 462 l~~~~l~~hDr~g~~~fev~~y~~~~~~~~~~~~~~r~r~~~d~~~~~~~~~~~a~~i~~D~~~~l~dL~~~~~~~---- 537 (660)
.+..+|..+|.+|+|....-=|...+...........++..+.. .+.++. ..|-..+...++..+....+..
T Consensus 64 ~~~~~f~~~D~d~~G~i~~~ef~~~~~~~~~~~~~~~~~~~f~~---~D~d~~-G~i~~~ef~~~~~~~~~~~g~~~~~~ 139 (190)
T 1fpw_A 64 FANHLFTVFDKDNNGFIHFEEFITVLSTTSRGTLEEKLSWAFEL---YDLNHD-GYITFDEMLTIVASVYKMMGSMVTLN 139 (190)
T ss_dssp HHHHHHHTCCSSCSSEECHHHHHHHHHHHSCCCSTHHHHHHHHH---HCSSCS-SEEEHHHHHHHHHHHHTTSCSTTSSS
T ss_pred HHHHHHHHHCCCCCCcEeHHHHHHHHHHHccCCcHHHHHHHHHH---hcCCCC-CcCcHHHHHHHHHHHHHHhccccCcc
Confidence 46678999999988765543332233222222223455555541 122221 2344444444554443222211
Q ss_pred -------CCchhhhhhhccCCCcccchhHHhhhccC
Q 006120 538 -------HGVSEMMEVHGEADSSMVSLSEFLVMFDD 566 (660)
Q Consensus 538 -------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 566 (660)
..+..++..--.++.-.|+|.||+.++..
T Consensus 140 ~~~~~~~~~~~~~f~~~D~d~dG~I~~~Ef~~~~~~ 175 (190)
T 1fpw_A 140 EDEATPEMRVKKIFKLMDKNEDGYITLDEFREGSKV 175 (190)
T ss_dssp CCCCCHHHHHHHHHHHHTTTCSSEEEHHHHHHHHHS
T ss_pred cccchHHHHHHHHHHHhCCCCCCcCcHHHHHHHHHh
Confidence 11233444444466668999999997664
No 322
>1x6a_A LIMK-2, LIM domain kinase 2; LIM-kinase 2, zinc finger domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=33.45 E-value=17 Score=27.57 Aligned_cols=42 Identities=24% Similarity=0.516 Sum_probs=26.6
Q ss_pred cccCccccCC-Cccccccccccc-cccccccccccccccccccC
Q 006120 580 LEAGDRNRHG-RHVCSVCRYPII-GSRFKEMKSHFSLCSQCYSE 621 (660)
Q Consensus 580 ~~~~~~~~~~-~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~ 621 (660)
+++.|+.=|. =-+|++|+-++. |++|--.+..--.|..||.+
T Consensus 30 ~~a~~~~~H~~CF~C~~C~~~L~~g~~f~~~~~~~~~C~~c~~~ 73 (81)
T 1x6a_A 30 MVAGEFKYHPECFACMSCKVIIEDGDAYALVQHATLYCGKCHNE 73 (81)
T ss_dssp BCCTTCCBCTTSCBCTTTCCBCCTTSCEEECSSSCEEEHHHHHH
T ss_pred EEECCceeccccCCccCCCCccCCCCcEEEeeCCEEECHHHHHH
Confidence 4566777776 357788888874 67775223344567777753
No 323
>1nya_A Calerythrin; EF-hand, metal binding protein; NMR {Saccharopolyspora erythraea} SCOP: a.39.1.5
Probab=33.37 E-value=54 Score=28.28 Aligned_cols=97 Identities=9% Similarity=0.068 Sum_probs=50.2
Q ss_pred HHHHhhhhccCCCcccccchhhhhhhcccCC-CC---H----HHHHHhhhhhhcccccCCCCccchhccHHHHHHHhHHH
Q 006120 462 INERILSVLDETGSARVDLGMFYAILAPICS-GS---P----EKRKRVAFDALLWRPVNEGSTQVRKVDAVRYIKLLRAV 533 (660)
Q Consensus 462 l~~~~l~~hDr~g~~~fev~~y~~~~~~~~~-~~---~----~~r~r~~~d~~~~~~~~~~~a~~i~~D~~~~l~dL~~~ 533 (660)
.+..+|...|.+|+|.+..-=|...+..... .. . ...++..+. ..+.++. ..|-..+...++..+-
T Consensus 59 ~~~~lf~~~D~d~dg~i~~~Ef~~~~~~~~~~~~~~~~~~~~~~~~~~~F~---~~D~d~~-G~I~~~e~~~~l~~~g-- 132 (176)
T 1nya_A 59 LFDYLAKEAGVGSDGSLTEEQFIRVTENLIFEQGEASFNRVLGPVVKGIVG---MCDKNAD-GQINADEFAAWLTALG-- 132 (176)
T ss_dssp HHHHHHHHHTSCTTCCBCHHHHHHHHHHHHSSSCHHHHHHHHHHHHHHHHH---HTCSSCC-SEEEHHHHHHHHHHTT--
T ss_pred HHHHHHHHhCCCCCCeEcHHHHHHHHHHHhcCCchhhHHHHHHHHHHHHHH---HhcCCCC-CCCCHHHHHHHHHHhC--
Confidence 3447888999987776554333222222111 11 1 123444444 2222222 3444555555555442
Q ss_pred hccCCCchhhhhhhccCCCcccchhHHhhhcc
Q 006120 534 YIPSHGVSEMMEVHGEADSSMVSLSEFLVMFD 565 (660)
Q Consensus 534 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 565 (660)
.+..-+..++..-..++.-.|+|.||+.++.
T Consensus 133 -~~~~~~~~~~~~~D~d~dg~i~~~ef~~~~~ 163 (176)
T 1nya_A 133 -MSKAEAAEAFNQVDTNGNGELSLDELLTAVR 163 (176)
T ss_dssp -CCHHHHHHHHHHHCTTCSSEEEHHHHHHHHS
T ss_pred -CCHHHHHHHHHHhCCCCCCCCcHHHHHHHHH
Confidence 2222234455555556667899999999886
No 324
>1o9d_A 14-3-3-like protein C; protein-binding, fusicoccin, 14-3-3 family, activating drug; HET: TPO; 2.3A {Nicotiana tabacum} SCOP: a.118.7.1 PDB: 1o9c_A* 1o9e_A* 1o9f_A* 3e6y_A*
Probab=33.35 E-value=3.2e+02 Score=25.92 Aligned_cols=48 Identities=23% Similarity=0.367 Sum_probs=31.0
Q ss_pred HHHHHHHHHHHH-----hCCCCHH---HHHHHHHHHHHhcCCCHHHHHHHHHHHHcc
Q 006120 286 ERAIEVFQKAID-----LKPGHVD---ALYNLGGLYMDLGAGETEEAKKALKEALKM 334 (660)
Q Consensus 286 ~~A~~~~~~al~-----~~p~~~~---a~~~La~~~~~~~~g~~~eA~~~~~~al~l 334 (660)
+.|...|+.|+. +.|.+|- ...+.+..|... .++.++|....++++.-
T Consensus 152 e~a~~aY~~A~~iA~~~L~pthPirLGLaLNfSVFyYEi-ln~~~~Ac~lAk~Afd~ 207 (260)
T 1o9d_A 152 ESTLTAYKAAQDIATTELAPTHPIRLGLALNFSVFYYEI-LNSPDRACNLAKQAFDE 207 (260)
T ss_dssp HHHHHHHHHHHHHHHHHSCTTCHHHHHHHHHHHHHHHHT-SCCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHHHHH-ccCHHHHHHHHHHHHHH
Confidence 456677777764 3566653 344555555553 28999998888887643
No 325
>2co8_A NEDD9 interacting protein with calponin homology and LIM domains; zinc finger protein, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=32.95 E-value=33 Score=26.08 Aligned_cols=45 Identities=11% Similarity=0.180 Sum_probs=33.9
Q ss_pred ccCccccCC-Ccccccccccccccccccc-ccccccccccccCCCCC
Q 006120 581 EAGDRNRHG-RHVCSVCRYPIIGSRFKEM-KSHFSLCSQCYSEGKVP 625 (660)
Q Consensus 581 ~~~~~~~~~-~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~ 625 (660)
.+.|+.-|. =-+|++|.-++.+..|... +..--.|..||.+-.-+
T Consensus 32 ~a~~~~wH~~CF~C~~C~~~L~~~~~~~~~~~g~~yC~~~y~~~~~~ 78 (82)
T 2co8_A 32 CVNGHFFHRSCFRCHTCEATLWPGGYEQHPGDGHFYCLQHLPQTDSG 78 (82)
T ss_dssp CBTTBCCBTTTCBCSSSCCBCCTTSEECCTTTCCCEETTTCCCCCCC
T ss_pred EECCCeeCCCcCEEcCCCCCcCCCceeEeCcCCEEEChHHHHhhhcC
Confidence 367888887 4689999999999988852 55566899999765443
No 326
>1yk4_A Rubredoxin, RD; electron transport; 0.69A {Pyrococcus abyssi} PDB: 2pya_A 1yk5_A 1bq8_A 1bq9_A* 3kyu_A 3kyv_A 3kyw_A 3kyx_A 3kyy_A 3ryg_A 3rz6_A 3rzt_A 3ss2_A 1brf_A 1caa_A 1cad_A 1vcx_A 1zrp_A 1iu5_A 1iu6_A ...
Probab=32.92 E-value=16 Score=25.33 Aligned_cols=29 Identities=21% Similarity=0.744 Sum_probs=21.9
Q ss_pred cccccccccccc------------cccccccccccccccccc
Q 006120 591 HVCSVCRYPIIG------------SRFKEMKSHFSLCSQCYS 620 (660)
Q Consensus 591 ~~~~~~~~~~~~------------~~~~~~~~~~~~~~~~~~ 620 (660)
..|.+|+|.-++ .+|.++-..+ .|..|-.
T Consensus 3 ~~C~~CGyvYd~~~Gdp~~gi~pGt~f~~lP~dw-~CP~Cg~ 43 (52)
T 1yk4_A 3 LSCKICGYIYDEDEGDPDNGISPGTKFEDLPDDW-VCPLCGA 43 (52)
T ss_dssp EEESSSSCEEETTTCBGGGTBCTTCCGGGSCTTC-BCTTTCC
T ss_pred EEeCCCCeEECCCcCCcccCcCCCCCHhHCCCCC-cCCCCCC
Confidence 579999998764 5788876554 6888865
No 327
>3iqu_A 14-3-3 protein sigma; signal transuction, nucleus, phosphoprotein, secreted, prote binding, signaling protein; HET: SEP; 1.05A {Homo sapiens} SCOP: a.118.7.1 PDB: 3iqj_A* 3iqv_A* 3mhr_A* 3lw1_A* 3o8i_A* 3p1n_A* 3p1o_A* 3t0l_A* 3t0m_A* 3u9x_A* 3ux0_A* 4dat_A* 4dau_A* 3p1s_A* 3p1r_A* 3smk_A* 3spr_A* 3p1q_A* 3p1p_A* 3sml_A* ...
Probab=32.90 E-value=3.1e+02 Score=25.60 Aligned_cols=47 Identities=23% Similarity=0.326 Sum_probs=30.5
Q ss_pred HHHHHHHHHHHH-----hCCCCHH---HHHHHHHHHHHhcCCCHHHHHHHHHHHHc
Q 006120 286 ERAIEVFQKAID-----LKPGHVD---ALYNLGGLYMDLGAGETEEAKKALKEALK 333 (660)
Q Consensus 286 ~~A~~~~~~al~-----~~p~~~~---a~~~La~~~~~~~~g~~~eA~~~~~~al~ 333 (660)
+.|...|++|.. +.|.+|- ...+.+..|... .++.++|....++|+.
T Consensus 150 e~a~~aY~~A~~iA~~~L~pthPirLGLaLNfSVFyyEi-ln~~~~Ac~lAk~Afd 204 (236)
T 3iqu_A 150 DSARSAYQEAMDISKKEMPPTNPIRLGLALNFSVFHYEI-ANSPEEAISLAKTTFD 204 (236)
T ss_dssp HHHHHHHHHHHHHHHHHSCTTCHHHHHHHHHHHHHHHHT-SSCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhhCCCCCcHHHHHHHHHHHHHHHH-cCCHHHHHHHHHHHHH
Confidence 556677777754 4577753 344555555544 2899998888777764
No 328
>2lhi_A Calmodulin, serine/threonine-protein phosphatase catalytic subunit A1; yeast calmodulin, CNA1, metal binding protein; NMR {Saccharomyces cerevisiae}
Probab=32.51 E-value=68 Score=28.24 Aligned_cols=99 Identities=12% Similarity=0.259 Sum_probs=48.9
Q ss_pred HHHHhhhhccCCCcccccchhhhhhhcccCCCC-HHHHHHhhhhhhcccccCCCCccchhccHHHHHHHhHHHhccCCCc
Q 006120 462 INERILSVLDETGSARVDLGMFYAILAPICSGS-PEKRKRVAFDALLWRPVNEGSTQVRKVDAVRYIKLLRAVYIPSHGV 540 (660)
Q Consensus 462 l~~~~l~~hDr~g~~~fev~~y~~~~~~~~~~~-~~~r~r~~~d~~~~~~~~~~~a~~i~~D~~~~l~dL~~~~~~~~~~ 540 (660)
-+..++...|.+|+|..+.--|........... ..+.++.+|..| +.++. ..|-..+...++..+-.-+ +...+
T Consensus 48 ~~~~~~~~~d~d~~~~i~~~ef~~~~~~~~~~~~~~~~l~~aF~~f---D~d~~-G~I~~~el~~~l~~~g~~~-~~~ei 122 (176)
T 2lhi_A 48 EVNDLMNEIDVDGNHQIEFSEFLALMSRQLKSNDSEQELLEAFKVF---DKNGD-GLISAAELKHVLTSIGEKL-TDAEV 122 (176)
T ss_dssp HHHHHHTTTCSSCSSSBCTTHHHHHHTSSCCSSHHHHHHHHHHHHH---CSSCS-SSBCHHHHHHHHHTTTCCC-CHHHH
T ss_pred HHHHHHHHhCcCCCccchHHHHHHHHHHhcccCCcHHHHHHHHHHh---CCCCC-CcCcHHHHHHHHHHcCccc-chHHH
Confidence 355677778888665544433322333332222 234666666632 32222 2344444444444321111 11123
Q ss_pred hhhhhhhccCCCcccchhHHhhhccC
Q 006120 541 SEMMEVHGEADSSMVSLSEFLVMFDD 566 (660)
Q Consensus 541 ~~~~~~~~~~~~~~~~~~~~~~~~~~ 566 (660)
.+|+..-- ++.-.|+|.||+.|.+-
T Consensus 123 ~~l~~~~d-d~dG~I~~~EF~~~m~k 147 (176)
T 2lhi_A 123 DDMLREVS-DGSGEINIQQFAALLSK 147 (176)
T ss_dssp HHHHHHHH-TTSSCBCTTHHHHHHTC
T ss_pred HHHHHhhc-CCCCeEeHHHHHHHHHh
Confidence 44554332 55668999999998754
No 329
>3dd4_A KV channel-interacting protein 4; EF-hands protein, ION transport, ionic channel, membrane, PO potassium channel, potassium transport, transport; 3.00A {Mus musculus} PDB: 2e6w_A
Probab=32.26 E-value=60 Score=30.01 Aligned_cols=102 Identities=15% Similarity=0.272 Sum_probs=56.6
Q ss_pred HHHHHhhhhccCCCcccccchhhhhhhcccCCCCHHHHHHhhhhhhcccccCCCCccchhccHHHHHHHhHHHhc-----
Q 006120 461 AINERILSVLDETGSARVDLGMFYAILAPICSGSPEKRKRVAFDALLWRPVNEGSTQVRKVDAVRYIKLLRAVYI----- 535 (660)
Q Consensus 461 ~l~~~~l~~hDr~g~~~fev~~y~~~~~~~~~~~~~~r~r~~~d~~~~~~~~~~~a~~i~~D~~~~l~dL~~~~~----- 535 (660)
..+..+|...|.+|+|....-=|...+.........++++..+..+ +.++. ..|-..+...++..+-...+
T Consensus 102 ~~~~~lf~~~D~d~~G~I~~~Ef~~~l~~~~~~~~~~~l~~~F~~~---D~d~d-G~Is~~E~~~~l~~~~~~~~~~~~~ 177 (229)
T 3dd4_A 102 TYAHFLFNAFDTDHNGAVSFEDFIKGLSILLRGTVQEKLNWAFNLY---DINKD-GYITKEEMLDIMKAIYDMMGKCTYP 177 (229)
T ss_dssp HHHHHHHHTTCSSCCSSCCHHHHHHHHHHHHHSCHHHHHHHHHHHH---CTTCS-SCCBHHHHHHHHHHHHHHCC-----
T ss_pred HHHHHHHHHcCCCCCCeEeHHHHHHHHHHHcCCChHHHHHHHHHHh---CCCCC-CeECHHHHHHHHHHHHHHhccccCC
Confidence 4567789999999887655433322333222334455676666622 33222 34555666666665532221
Q ss_pred ------cCCCchhhhhhhccCCCcccchhHHhhhccC
Q 006120 536 ------PSHGVSEMMEVHGEADSSMVSLSEFLVMFDD 566 (660)
Q Consensus 536 ------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 566 (660)
+..-+..++..-..++.-.|||.||+.++..
T Consensus 178 ~~~~~~~~~~~~~~f~~~D~d~dG~Is~~EF~~~~~~ 214 (229)
T 3dd4_A 178 VLKEDAPRQHVETFFQKMDKNKDGVVTIDEFIESCQK 214 (229)
T ss_dssp ------CCTHHHHHHHHHCSSCSSBCCHHHHHHHHHT
T ss_pred CcchhhHHHHHHHHHHHhcCCCCCcEeHHHHHHHHHh
Confidence 2222344444444466668999999997663
No 330
>1s6i_A CDPK, calcium-dependent protein kinase SK5; EF-hand, helix-loop-helix, calcium-binding, calmodulin superfamily, transferase, plant protein; NMR {Glycine max} SCOP: a.39.1.5
Probab=31.91 E-value=50 Score=29.42 Aligned_cols=97 Identities=14% Similarity=0.176 Sum_probs=47.4
Q ss_pred HHHhhhhccCCCcccccchhhhhhhcccCCCCHHHHHHhhhhhhcccccCCCCccchhccHHHHHHHhHHHhccCCCchh
Q 006120 463 NERILSVLDETGSARVDLGMFYAILAPICSGSPEKRKRVAFDALLWRPVNEGSTQVRKVDAVRYIKLLRAVYIPSHGVSE 542 (660)
Q Consensus 463 ~~~~l~~hDr~g~~~fev~~y~~~~~~~~~~~~~~r~r~~~d~~~~~~~~~~~a~~i~~D~~~~l~dL~~~~~~~~~~~~ 542 (660)
+..+|...|.+|+|.+..--|...+...........++..|.. .+.++. ..|-..+...++..+- .+...+..
T Consensus 48 ~~~l~~~~D~d~dG~I~~~EF~~~~~~~~~~~~~~~l~~~F~~---~D~d~d-G~Is~~El~~~l~~~g---~~~~~~~~ 120 (188)
T 1s6i_A 48 IKDLMDAADIDKSGTIDYGEFIAATVHLNKLEREENLVSAFSY---FDKDGS-GYITLDEIQQACKDFG---LDDIHIDD 120 (188)
T ss_dssp HHHHHHHTCTTCSSEECHHHHHHHHTTSSSSCCCCSTHHHHHH---TTTTCS-SEEEHHHHHHTTTTTT---CCTTHHHH
T ss_pred HHHHHHHcCCCCCCeEeHHHHHHHHHHHhccCHHHHHHHHHHH---HCCCCC-CcCcHHHHHHHHHHcC---CCHHHHHH
Confidence 4567788898877765543332223222111112244444441 122221 2333333333333221 22223444
Q ss_pred hhhhhccCCCcccchhHHhhhccC
Q 006120 543 MMEVHGEADSSMVSLSEFLVMFDD 566 (660)
Q Consensus 543 ~~~~~~~~~~~~~~~~~~~~~~~~ 566 (660)
++..-..++.-.|+|.||+.++..
T Consensus 121 ~~~~~D~d~dG~Is~~EF~~~~~~ 144 (188)
T 1s6i_A 121 MIKEIDQDNDGQIDYGEFAAMMRK 144 (188)
T ss_dssp HHHHHCSSSSSEEETTHHHHTTSC
T ss_pred HHHHHCCCCCCcEeHHHHHHHHHH
Confidence 555545566668999999997753
No 331
>3ubw_A 14-3-3E, 14-3-3 protein epsilon; adapter protein, signaling protein, signaling protein-protei complex; HET: SEP; 1.90A {Homo sapiens}
Probab=31.83 E-value=3.4e+02 Score=25.74 Aligned_cols=169 Identities=13% Similarity=0.065 Sum_probs=79.0
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHH-cCCHHHHHHHHHHHHHHhccCCCchhchHHHHH
Q 006120 127 GHMAIGRVLYEHQLFKEALVSFKRACELQPT-DVRPHFRAGNCLYV-LGRYREAKEEYLLALEAAETGGNQWAYLLPQIY 204 (660)
Q Consensus 127 ~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~~la~~~~~-~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~ 204 (660)
-+..+|.+.-+.++|++...+.+++.+.++. ..+=.+.+..+|-. .|....+...+....+.....+.... ...+-
T Consensus 33 ~lv~~AKLaeqaeRYddMv~~MK~v~~~~~eLt~EERNLLSvAYKNvIgarR~swRiissieqkee~~g~~~~--~~~i~ 110 (261)
T 3ubw_A 33 DLVYQAKLAEQAERYDEMVESMKKVAGMDVELTVEERNLLSVAYKNVIGARRASWRIISSIEQKEENKGGEDK--LKMIR 110 (261)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHTTCSCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTCHHH--HHHHH
T ss_pred HHHHHHHHHHHhccHHHHHHHHHHHHhcCCcCCHHHHHHHHHHHHhccCCchhHHHHHhHHHHhhhccccHHH--HHHHH
Confidence 4456778888889999999888888887655 33444455555432 23333333333222222111111000 00000
Q ss_pred HHHHHHHHHCC-CHHHHHHHHHHHHHhCCCcHH----HHHHHHHHHHH-----CCC-----HHHHHHHHHHHHHh-----
Q 006120 205 VNLGIALEGEG-MVLSACEYYRESAILCPTHFR----ALKLLGSALFG-----VGE-----YRAAVKALEEAIFI----- 264 (660)
Q Consensus 205 ~~la~~~~~~g-~~~~A~~~~~~al~~~p~~~~----~~~~lg~~~~~-----~g~-----~~~A~~~~~~al~~----- 264 (660)
.....+-..+. --.+.+..+++.+--...+++ .+...|..|.- .|+ -+.|...|++|.++
T Consensus 111 ~yr~kIe~EL~~iC~dil~lld~~Lip~a~~~EskVFY~KMKGDYyRYlAE~~~g~~rk~~~e~a~~aY~~A~~iA~~~L 190 (261)
T 3ubw_A 111 EYRQMVETELKLICCDILDVLDKHLIPAANTGESKVFYYKMKGDYHRYLAEFATGNDRKEAAENSLVAYKAASDIAMTEL 190 (261)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHTHHHHCCSHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHS
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhccccCCcHHHHHHHHHhhccHHHHHHhhcCchHHHHHHHHHHHHHHHHHHHHHhhC
Confidence 00000000000 011222333332222222222 12234544432 221 25677888887754
Q ss_pred CCCCHH---HHHHHHHHHHh-CCChHHHHHHHHHHHH
Q 006120 265 KPDYAD---AHCDLASALHA-MGEDERAIEVFQKAID 297 (660)
Q Consensus 265 ~p~~~~---~~~~la~~~~~-~g~~~~A~~~~~~al~ 297 (660)
.|.+|. ...|.+..|.. +++.++|....++|+.
T Consensus 191 ~pThPirLGLaLNfSVFyYEIln~p~~Ac~LAk~AFd 227 (261)
T 3ubw_A 191 PPTHPIRLGLALNFSVFYYEILNSPDRACRLAKAAFD 227 (261)
T ss_dssp CTTCHHHHHHHHHHHHHHHHTSCCHHHHHHHHHHHHH
T ss_pred CCCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 466643 33455555554 7999999888777754
No 332
>1m45_A MLC1P, myosin light chain; protein-peptide complex, myosin light chain, cell cycle protein; 1.65A {Saccharomyces cerevisiae} SCOP: a.39.1.5 PDB: 1m46_A 1n2d_A 2fcd_A 2fce_A
Probab=31.60 E-value=30 Score=29.05 Aligned_cols=99 Identities=10% Similarity=0.073 Sum_probs=47.0
Q ss_pred HHHHhhhhc-cCCCcccccchhhhhhhccc------CCCCHHHHHHhhhhhhcccccCCCCccchhccHHHHHHHhHHHh
Q 006120 462 INERILSVL-DETGSARVDLGMFYAILAPI------CSGSPEKRKRVAFDALLWRPVNEGSTQVRKVDAVRYIKLLRAVY 534 (660)
Q Consensus 462 l~~~~l~~h-Dr~g~~~fev~~y~~~~~~~------~~~~~~~r~r~~~d~~~~~~~~~~~a~~i~~D~~~~l~dL~~~~ 534 (660)
-+..++... |.+|+|.+..--|...+... ........++..|.. .+.++. ..|-..+...++..+-. -
T Consensus 41 ~~~~l~~~~~D~~~~g~i~~~eF~~~~~~~~~~~~~~~~~~~~~~~~~F~~---~D~d~~-G~I~~~el~~~l~~~g~-~ 115 (148)
T 1m45_A 41 LVQDIINADSSLRDASSLTLDQITGLIEVNEKELDATTKAKTEDFVKAFQV---FDKEST-GKVSVGDLRYMLTGLGE-K 115 (148)
T ss_dssp HHHHHHHC--CC--CCEEEHHHHHHHHHHTHHHHHGGGCCCTHHHHHHHHT---TCSSSS-SEEEHHHHHHHHHHSTT-C
T ss_pred HHHHHHHHhhCCCCCCeEcHHHHHHHHHHHHhhccccccccHHHHHHHHHH---hCCCCC-CcCCHHHHHHHHHHcCC-C
Confidence 345567778 88877765544442233222 122223455555551 122221 34444555555543310 0
Q ss_pred ccCCCchhhhhhhccCCCcccchhHHhhhcc
Q 006120 535 IPSHGVSEMMEVHGEADSSMVSLSEFLVMFD 565 (660)
Q Consensus 535 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 565 (660)
.+..-+..++..-..++.-.|+|.||+.++.
T Consensus 116 ~~~~~~~~~~~~~d~d~dg~i~~~eF~~~~~ 146 (148)
T 1m45_A 116 LTDAEVDELLKGVEVDSNGEIDYKKFIEDVL 146 (148)
T ss_dssp CCHHHHHHHHTTCCCCTTSEEEHHHHHHHHH
T ss_pred CCHHHHHHHHHHhCCCCCCeEeHHHHHHHHh
Confidence 1111233455444456667899999998764
No 333
>1g8i_A Frequenin, neuronal calcium sensor 1; calcium binding-protein, EF-hand, calcium ION, metal binding protein; HET: 1PE P6G; 1.90A {Homo sapiens} SCOP: a.39.1.5 PDB: 2lcp_A
Probab=31.52 E-value=30 Score=30.58 Aligned_cols=100 Identities=14% Similarity=0.270 Sum_probs=53.0
Q ss_pred HHHHhhhhccCCCcccccchhhhhhhcccCCCCHHHHHHhhhhhhcccccCCCCccchhccHHHHHHHhHHHhccC----
Q 006120 462 INERILSVLDETGSARVDLGMFYAILAPICSGSPEKRKRVAFDALLWRPVNEGSTQVRKVDAVRYIKLLRAVYIPS---- 537 (660)
Q Consensus 462 l~~~~l~~hDr~g~~~fev~~y~~~~~~~~~~~~~~r~r~~~d~~~~~~~~~~~a~~i~~D~~~~l~dL~~~~~~~---- 537 (660)
.+..+|..+|.+|+|....-=|...+...........++..+.. .+.++. ..|-..+...++..+....+..
T Consensus 64 ~~~~~f~~~D~d~~g~i~~~ef~~~~~~~~~~~~~~~~~~~f~~---~D~d~~-G~i~~~e~~~~l~~~~~~~g~~~~~~ 139 (190)
T 1g8i_A 64 FATFVFNVFDENKDGRIEFSEFIQALSVTSRGTLDEKLRWAFKL---YDLDND-GYITRNEMLDIVDAIYQMVGNTVELP 139 (190)
T ss_dssp HHHHHHHHHCTTCSSEEEHHHHHHHHHHHHHCCHHHHHHHHHHH---HCTTCS-SEEEHHHHHHHHHHHHHHC-----CC
T ss_pred HHHHHHHHHhcCCCCeEeHHHHHHHHHHhcCCCHHHHHHHHHHh---hcCCCC-CeECHHHHHHHHHHHHHHhCCccCCc
Confidence 46778999999988765543332222222222334455555541 122222 3455555566666653333211
Q ss_pred -------CCchhhhhhhccCCCcccchhHHhhhcc
Q 006120 538 -------HGVSEMMEVHGEADSSMVSLSEFLVMFD 565 (660)
Q Consensus 538 -------~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 565 (660)
.-+.+++..--.++.-.|+|.||+.++.
T Consensus 140 ~~~~~~~~~~~~~f~~~D~d~dG~i~~~ef~~~~~ 174 (190)
T 1g8i_A 140 EEENTPEKRVDRIFAMMDKNADGKLTLQEFQEGSK 174 (190)
T ss_dssp GGGSSHHHHHHHHHHHHCSSCSSEEEHHHHHHHHH
T ss_pred cccccHHHHHHHHHHHhcCCCCCcEeHHHHHHHHH
Confidence 1123344444456666899999999765
No 334
>3f6q_B LIM and senescent cell antigen-like-containing domain protein 1; ILK, integrin-linked kinase, pinch, ankyrin repeat, ANK, IPP; 1.60A {Homo sapiens} PDB: 2kbx_B 3ixe_B
Probab=31.33 E-value=11 Score=27.70 Aligned_cols=39 Identities=18% Similarity=0.339 Sum_probs=25.3
Q ss_pred ccCccccCC-Ccccccccccccccccccccccccccccccc
Q 006120 581 EAGDRNRHG-RHVCSVCRYPIIGSRFKEMKSHFSLCSQCYS 620 (660)
Q Consensus 581 ~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 620 (660)
.+.++.-|. --+|++|+-|+.+.+|-+.. .--.|..||.
T Consensus 29 ~~~~~~~H~~CF~C~~C~~~L~~~~~~~~~-g~~yC~~~y~ 68 (72)
T 3f6q_B 29 NSNGELYHEQCFVCAQCFQQFPEGLFYEFE-GRKYCEHDFQ 68 (72)
T ss_dssp EETTEEEETTTSSCTTTCCCCGGGCCEEET-TEEECHHHHH
T ss_pred EeCcCeeCcCCCcccCCCCCCCCCCeEeEC-CeEeCHHHHH
Confidence 356666665 34677888887777776544 3456777774
No 335
>1q80_A SCP, sarcoplasmic calcium-binding protein; all-alpha, metal binding protein; NMR {Neanthes diversicolor} SCOP: a.39.1.5 PDB: 2scp_A
Probab=30.92 E-value=71 Score=27.40 Aligned_cols=46 Identities=11% Similarity=0.238 Sum_probs=27.5
Q ss_pred cchhccHHHHHHHhHHHhccCCCchhhhhhhccCCCcccchhHHhhhcc
Q 006120 517 QVRKVDAVRYIKLLRAVYIPSHGVSEMMEVHGEADSSMVSLSEFLVMFD 565 (660)
Q Consensus 517 ~~i~~D~~~~l~dL~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 565 (660)
.|-..+...++..+- .+..-+..++..--.++.-.|+|.||+.++.
T Consensus 110 ~i~~~e~~~~l~~~g---~~~~~~~~~~~~~D~d~dg~i~~~ef~~~~~ 155 (174)
T 1q80_A 110 NISRDEYGIFFGMLG---LDKTMAPASFDAIDTNNDGLLSLEEFVIAGS 155 (174)
T ss_dssp SBCHHHHHHHHHHHT---CCGGGHHHHHHHHCTTCSSSBCHHHHHHHHH
T ss_pred cccHHHHHHHHHHcC---CCHHHHHHHHHHhCCCCCceEeHHHHHHHHH
Confidence 444555555555551 2233344455555556667899999999763
No 336
>2d8x_A Protein pinch; LIM domain, pinch protein, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=30.73 E-value=14 Score=27.08 Aligned_cols=41 Identities=20% Similarity=0.451 Sum_probs=28.8
Q ss_pred cccCccccCCC-ccccccccccccccccccccccccccccccC
Q 006120 580 LEAGDRNRHGR-HVCSVCRYPIIGSRFKEMKSHFSLCSQCYSE 621 (660)
Q Consensus 580 ~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 621 (660)
+.+.++.-|.. -+|++|+-|+.+..|.+. ..--.|..||.+
T Consensus 20 ~~a~~~~~H~~CF~C~~C~~~L~~~~f~~~-~g~~yC~~c~~~ 61 (70)
T 2d8x_A 20 IKAMNNSWHPECFRCDLCQEVLADIGFVKN-AGRHLCRPCHNR 61 (70)
T ss_dssp EEETTEEECTTTSBCSSSCCBCSSSCCEEE-TTEEECHHHHHH
T ss_pred EEECcccccccCCEeCCCCCcCCCCccEeE-CCeEECHHHhhh
Confidence 45667777763 578888888888777763 344578888854
No 337
>1lko_A Rubrerythrin all-iron(II) form; reduced form, DIIRON, four-helix bundle, rubre like, electron transport; 1.63A {Desulfovibrio vulgaris} SCOP: a.25.1.1 g.41.5.1 PDB: 1dvb_A 1jyb_A 1b71_A 1lkm_A 1lkp_A 1qyb_A 1s2z_A 1s30_A 1ryt_A
Probab=30.20 E-value=11 Score=34.29 Aligned_cols=28 Identities=29% Similarity=0.605 Sum_probs=21.2
Q ss_pred CCCccccccccccccccccccccccccccccccC
Q 006120 588 HGRHVCSVCRYPIIGSRFKEMKSHFSLCSQCYSE 621 (660)
Q Consensus 588 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 621 (660)
+....|.+|+|..+|.-.-+ .|+.|-+.
T Consensus 153 ~~~~~C~~CG~~~~g~~~p~------~CP~C~~~ 180 (191)
T 1lko_A 153 ATKWRCRNCGYVHEGTGAPE------LCPACAHP 180 (191)
T ss_dssp EEEEEETTTCCEEEEEECCS------BCTTTCCB
T ss_pred CceEEECCCCCEeeCCCCCC------CCCCCcCC
Confidence 33688999999999863333 89999764
No 338
>3t5v_B Nuclear mRNA export protein THP1; PCI, mRNA nuclear export, mRNA, nuclear, transcription; 2.90A {Saccharomyces cerevisiae}
Probab=29.87 E-value=2e+02 Score=29.97 Aligned_cols=92 Identities=7% Similarity=-0.003 Sum_probs=65.3
Q ss_pred HHHHHHHHHHHHHHHhhccCc----------HHHHHH---HHHHHHHHHHcCCHHHHHHHHHHHHHhCC--C--------
Q 006120 101 YAVFVKELGVLRNRADGARSR----------EEAFDG---HMAIGRVLYEHQLFKEALVSFKRACELQP--T-------- 157 (660)
Q Consensus 101 ~g~~~~Al~~l~~a~~~~~~~----------~~~~~~---~~~lg~~~~~~g~~~~A~~~~~~al~~~p--~-------- 157 (660)
....+++...+.+......++ .....+ ...+-.+|++.++..-+...++..-...+ .
T Consensus 139 ~~~le~~a~~i~k~F~~cl~Dr~~~~~~s~p~kk~~~l~l~n~L~kiYFkl~~~~lckni~k~i~~~~~~p~~~~~p~~q 218 (455)
T 3t5v_B 139 HQFLSHISSILSRLFNSIKPPRGNASSTNIPGKQRILLYLVNKLNNIYFRIESPQLCSNIFKNFQPKSMLAHFNEYQLDQ 218 (455)
T ss_dssp THHHHHHHHHHHHHHHHCCCC----CCSSCCHHHHHHHHHHHHHHHHHHHSSCCTTHHHHHHTHHHHCCCSCGGGSCHHH
T ss_pred hhHHHHHHHHHHHHHHHhcccCCCcccccccccchhHHHHHHHHHHHHHHcCCHHHHHHHHHHhccCCCCcChhhCCccc
Confidence 345666777777766553211 122222 23455789999999999888876544432 1
Q ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH-hccC
Q 006120 158 DVRPHFRAGNCLYVLGRYREAKEEYLLALEA-AETG 192 (660)
Q Consensus 158 ~~~~~~~la~~~~~~g~~~~A~~~~~~al~~-~p~~ 192 (660)
.....+.+|.++...++|.+|.+.+..|+.. .|..
T Consensus 219 ~v~Y~YYlGr~~~~~~~y~~A~~~L~~A~~~lcp~~ 254 (455)
T 3t5v_B 219 QIEYRYLLGRYYLLNSQVHNAFVQFNEAFQSLLNLP 254 (455)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHCC
T ss_pred eEeeeHHHHHHHHHHccHHHHHHHHHHHHHhcCCcc
Confidence 2467899999999999999999999999999 7764
No 339
>1rji_A BMKX, potassium channel toxin KX; 3-10 helix, beta sheet; NMR {Synthetic} SCOP: g.3.7.2 PDB: 1wt8_A
Probab=29.74 E-value=23 Score=20.60 Aligned_cols=18 Identities=33% Similarity=0.866 Sum_probs=12.8
Q ss_pred cccccccccccccccccccccccccccccCC
Q 006120 592 VCSVCRYPIIGSRFKEMKSHFSLCSQCYSEG 622 (660)
Q Consensus 592 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 622 (660)
-|-.|++-|+ |.+||-.|
T Consensus 12 ~cvmcglgi~-------------ck~~y~q~ 29 (31)
T 1rji_A 12 DCVMCGLGIS-------------CKNGYCQG 29 (31)
T ss_dssp GGTTTCSSCC-------------BCSSBBSC
T ss_pred cEEEeccceE-------------Ecceeecc
Confidence 4777888775 77777654
No 340
>2br9_A 14-3-3E, 14-3-3 protein epsilon; cell regulator protein, 14-3-3, phosphoserine, structural GE consortium, SGC, ywhae; HET: SEP; 1.75A {Homo sapiens} PDB: 3ual_A* 2o98_A* 3m50_A* 3m51_A* 3axy_C*
Probab=29.72 E-value=3.5e+02 Score=25.21 Aligned_cols=47 Identities=23% Similarity=0.384 Sum_probs=31.3
Q ss_pred HHHHHHHHHHHH-----hCCCCHH---HHHHHHHHHHHhcCCCHHHHHHHHHHHHc
Q 006120 286 ERAIEVFQKAID-----LKPGHVD---ALYNLGGLYMDLGAGETEEAKKALKEALK 333 (660)
Q Consensus 286 ~~A~~~~~~al~-----~~p~~~~---a~~~La~~~~~~~~g~~~eA~~~~~~al~ 333 (660)
+.|...|++|+. +.|.+|- ...+.+..|... .++.++|....++++.
T Consensus 147 e~a~~aY~~A~~iA~~~L~pthPirLgLaLN~SVF~yEi-l~~~~~A~~lAk~afd 201 (234)
T 2br9_A 147 ENSLVAYKAASDIAMTELPPTHPIRLGLALNFSVFYYEI-LNSPDRACRLAKAAFD 201 (234)
T ss_dssp HHHHHHHHHHHHHHHHHSCTTCHHHHHHHHHHHHHHHHT-SCCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHccCCCCCcHHHHHHHHHHHHHHHH-cCCHHHHHHHHHHHHH
Confidence 466777777765 4577763 344555555553 2899999988888775
No 341
>1x4k_A Skeletal muscle LIM-protein 3; LIM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=29.52 E-value=11 Score=27.75 Aligned_cols=41 Identities=24% Similarity=0.590 Sum_probs=29.2
Q ss_pred cccCccccCCC-ccccccccccccccccccccccccccccccC
Q 006120 580 LEAGDRNRHGR-HVCSVCRYPIIGSRFKEMKSHFSLCSQCYSE 621 (660)
Q Consensus 580 ~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 621 (660)
+.+.++.-|.. -+|++|+-|+.+..|.+... --.|..||.+
T Consensus 22 ~~a~~~~~H~~CF~C~~C~~~L~~~~~~~~~~-~~yC~~cy~~ 63 (72)
T 1x4k_A 22 MEYKGSSWHETCFICHRCQQPIGTKSFIPKDN-QNFCVPCYEK 63 (72)
T ss_dssp EEETTEEEETTTTCCSSSCCCCCSSSEEEETT-EEEEHHHHHH
T ss_pred EEECcCeecccCCcccccCCccCCCccCccCC-eEECHHHHhH
Confidence 45566777764 57888888888888876543 3568888854
No 342
>1x64_A Alpha-actinin-2 associated LIM protein; LIM domain, PDZ and LIM domain 3, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: g.39.1.3 g.39.1.3
Probab=29.37 E-value=16 Score=28.34 Aligned_cols=41 Identities=20% Similarity=0.350 Sum_probs=27.7
Q ss_pred cccCccccCCC-ccccccccccccccccccccccccccccccC
Q 006120 580 LEAGDRNRHGR-HVCSVCRYPIIGSRFKEMKSHFSLCSQCYSE 621 (660)
Q Consensus 580 ~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 621 (660)
+.+.|+.-|-. -+|.+|.-++.+..|-+. ..--.|..||.+
T Consensus 40 ~~a~~~~~H~~CF~C~~C~~~L~~~~~~~~-~g~~yC~~~y~~ 81 (89)
T 1x64_A 40 VKARDKYRHPECFVCADCNLNLKQKGYFFV-EGELYCETHARA 81 (89)
T ss_dssp EESSSCEECTTTCCCSSSCCCTTTSCCEEE-TTEEECHHHHHH
T ss_pred EEECCceECccCCEecCCCCCCCCCCeEeE-CCEEECHHHHHH
Confidence 45667777763 577888888877777765 334568777753
No 343
>3t5v_B Nuclear mRNA export protein THP1; PCI, mRNA nuclear export, mRNA, nuclear, transcription; 2.90A {Saccharomyces cerevisiae}
Probab=29.30 E-value=1.4e+02 Score=30.98 Aligned_cols=95 Identities=7% Similarity=-0.120 Sum_probs=61.1
Q ss_pred CHHHHHHHHHHHHHhCCC--------C----H----HHHHHHHHHHHHcCCHHHHHHHHHHHHHHhc--cCCCchhchHH
Q 006120 140 LFKEALVSFKRACELQPT--------D----V----RPHFRAGNCLYVLGRYREAKEEYLLALEAAE--TGGNQWAYLLP 201 (660)
Q Consensus 140 ~~~~A~~~~~~al~~~p~--------~----~----~~~~~la~~~~~~g~~~~A~~~~~~al~~~p--~~~~~~~~~~~ 201 (660)
..++|...+.++....-+ . - .....+-.+|.+.++..-+...++..-.... ...........
T Consensus 141 ~le~~a~~i~k~F~~cl~Dr~~~~~~s~p~kk~~~l~l~n~L~kiYFkl~~~~lckni~k~i~~~~~~p~~~~~p~~q~v 220 (455)
T 3t5v_B 141 FLSHISSILSRLFNSIKPPRGNASSTNIPGKQRILLYLVNKLNNIYFRIESPQLCSNIFKNFQPKSMLAHFNEYQLDQQI 220 (455)
T ss_dssp HHHHHHHHHHHHHHHCCCC----CCSSCCHHHHHHHHHHHHHHHHHHHSSCCTTHHHHHHTHHHHCCCSCGGGSCHHHHH
T ss_pred HHHHHHHHHHHHHHHhcccCCCcccccccccchhHHHHHHHHHHHHHHcCCHHHHHHHHHHhccCCCCcChhhCCccceE
Confidence 456777777777765211 1 1 1233455789999999999888865544322 11111111156
Q ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHHh-CCCc
Q 006120 202 QIYVNLGIALEGEGMVLSACEYYRESAIL-CPTH 234 (660)
Q Consensus 202 ~~~~~la~~~~~~g~~~~A~~~~~~al~~-~p~~ 234 (660)
..++.+|.++...++|.+|.+.+..|+.. .|..
T Consensus 221 ~Y~YYlGr~~~~~~~y~~A~~~L~~A~~~lcp~~ 254 (455)
T 3t5v_B 221 EYRYLLGRYYLLNSQVHNAFVQFNEAFQSLLNLP 254 (455)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHCC
T ss_pred eeeHHHHHHHHHHccHHHHHHHHHHHHHhcCCcc
Confidence 67788888888888888888888888887 6643
No 344
>1a7i_A QCRP2 (LIM1); LIM domain containing proteins, metal-binding protein, zinc finger; NMR {Coturnix japonica} SCOP: g.39.1.3 g.39.1.3 PDB: 2o10_A
Probab=29.30 E-value=12 Score=28.40 Aligned_cols=41 Identities=22% Similarity=0.502 Sum_probs=31.0
Q ss_pred cccCccccCC-CccccccccccccccccccccccccccccccC
Q 006120 580 LEAGDRNRHG-RHVCSVCRYPIIGSRFKEMKSHFSLCSQCYSE 621 (660)
Q Consensus 580 ~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 621 (660)
+.+.++.-|. =-+|+.|+-|+.+..|.+.. .--.|..||.+
T Consensus 23 ~~a~~~~~H~~CF~C~~C~~~L~~~~~~~~~-~~~yC~~cy~~ 64 (81)
T 1a7i_A 23 VQCDGRSFHRCCFLCMVCRKNLDSTTVAIHD-AEVYCKSCYGK 64 (81)
T ss_dssp EEETTEEEESSSEECSSSCCEECSSCCEEET-TEEECSHHHHH
T ss_pred EEeCCcccccccCccCCCCCCCCCCCeEeeC-CEEECHHHHHH
Confidence 4667778886 45899999999998888763 44568888854
No 345
>2l3k_A Rhombotin-2, linker, LIM domain-binding protein 1; LMO2(LIM2)-LDB1(LID), chimera, fusion protein, oncoprotein; NMR {Mus musculus} PDB: 2l6y_B 2l6z_C
Probab=29.26 E-value=26 Score=29.17 Aligned_cols=41 Identities=22% Similarity=0.429 Sum_probs=31.3
Q ss_pred cccCccccCC-Ccccccccccc-ccccccccccccccccccccC
Q 006120 580 LEAGDRNRHG-RHVCSVCRYPI-IGSRFKEMKSHFSLCSQCYSE 621 (660)
Q Consensus 580 ~~~~~~~~~~-~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~ 621 (660)
+.+.++.-|. =-+|++|.-++ .|.+|-+.. .--.|..||.+
T Consensus 25 ~~a~~~~~H~~CF~C~~C~~~L~~g~~f~~~~-g~~yC~~cy~~ 67 (123)
T 2l3k_A 25 MRVKDKVYHLECFKCAACQKHFSVGDRYLLIN-SDIVCEQDIYE 67 (123)
T ss_dssp CCCSSCCCCTTTCBCTTTCCBCCTTCEEEECS-SSEEEGGGHHH
T ss_pred EEECCcccccccCccccCCCCCCCCCcEEeeC-CEEEcHHHhHH
Confidence 3566777786 45899999999 799998765 45679999853
No 346
>1yuz_A Nigerythrin; rubrythrin, rubredoxin, hemerythrin, electron transfer, DIIR center, oxidoreductase; 1.40A {Desulfovibrio vulgaris subsp} SCOP: a.25.1.1 g.41.5.1 PDB: 1yv1_A 1yux_A
Probab=28.93 E-value=20 Score=33.02 Aligned_cols=26 Identities=31% Similarity=0.873 Sum_probs=20.3
Q ss_pred CCccccccccccccccccccccccccccccccC
Q 006120 589 GRHVCSVCRYPIIGSRFKEMKSHFSLCSQCYSE 621 (660)
Q Consensus 589 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 621 (660)
....|.+|+|..+|. --..|..|-..
T Consensus 170 ~~~~C~~CG~i~~g~-------~p~~CP~C~~~ 195 (202)
T 1yuz_A 170 KFHLCPICGYIHKGE-------DFEKCPICFRP 195 (202)
T ss_dssp CEEECSSSCCEEESS-------CCSBCTTTCCB
T ss_pred cEEEECCCCCEEcCc-------CCCCCCCCCCC
Confidence 578999999999981 22689999654
No 347
>3iqu_A 14-3-3 protein sigma; signal transuction, nucleus, phosphoprotein, secreted, prote binding, signaling protein; HET: SEP; 1.05A {Homo sapiens} SCOP: a.118.7.1 PDB: 3iqj_A* 3iqv_A* 3mhr_A* 3lw1_A* 3o8i_A* 3p1n_A* 3p1o_A* 3t0l_A* 3t0m_A* 3u9x_A* 3ux0_A* 4dat_A* 4dau_A* 3p1s_A* 3p1r_A* 3smk_A* 3spr_A* 3p1q_A* 3p1p_A* 3sml_A* ...
Probab=28.64 E-value=3.6e+02 Score=25.10 Aligned_cols=169 Identities=14% Similarity=0.054 Sum_probs=82.9
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHH-cCCHHHHHHHHHHHHHHhccCCCchhchHHHHH
Q 006120 127 GHMAIGRVLYEHQLFKEALVSFKRACELQPT-DVRPHFRAGNCLYV-LGRYREAKEEYLLALEAAETGGNQWAYLLPQIY 204 (660)
Q Consensus 127 ~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~~la~~~~~-~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~ 204 (660)
-+..+|.+..+.++|++...+.+++.+.++. ..+=.+.+..+|-. .|....+...+....+.....+.........-|
T Consensus 10 ~~v~~AklaeqaeRyddM~~~mk~v~~~~~eLs~EERnLLSvaYKNvig~rR~swRiissieqke~~~~~~~~~~~i~~y 89 (236)
T 3iqu_A 10 SLIQKAKLAEQAERYEDMAAFMKGAVEKGEELSCEERNLLSVAYKNVVGGQRAAWRVLSSIEQKSNEEGSEEKGPEVREY 89 (236)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHTCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSTTCCCCCSHHHHH
T ss_pred HHHHHHHHHHHhccHHHHHHHHHHHHhcCCcCCHHHHHHHHHHHHhhcccchHHHHHHHHHHHHHhhcCCHHHHHHHHHH
Confidence 3556788888899999999999999888765 34455555555533 344444444443333222111111000011111
Q ss_pred HHHHHHHHHCC-CHHHHHHHHHHHHHhCCCcHH----HHHHHHHHHH-----HCCC-----HHHHHHHHHHHHHh-----
Q 006120 205 VNLGIALEGEG-MVLSACEYYRESAILCPTHFR----ALKLLGSALF-----GVGE-----YRAAVKALEEAIFI----- 264 (660)
Q Consensus 205 ~~la~~~~~~g-~~~~A~~~~~~al~~~p~~~~----~~~~lg~~~~-----~~g~-----~~~A~~~~~~al~~----- 264 (660)
.. .+-..+. --.+.+..+++.+--...+++ .+...|..|. ..|+ .+.|...|+.|.++
T Consensus 90 r~--kie~EL~~iC~dil~lld~~Lip~a~~~eskVFY~KmKGDyyRYlAE~~~g~~r~~~~e~a~~aY~~A~~iA~~~L 167 (236)
T 3iqu_A 90 RE--KVETELQGVCDTVLGLLDSHLIKEAGDAESRVFYLKMKGDYYRYLAEVATGDDKKRIIDSARSAYQEAMDISKKEM 167 (236)
T ss_dssp HH--HHHHHHHHHHHHHHHHHHTTHHHHCCSHHHHHHHHHHHHHHHHHHHHHCCSTTHHHHHHHHHHHHHHHHHHHHHHS
T ss_pred HH--HHHHHHHHHHHHHHHHHHHhcCccCCchHHHHHHHHhhhhHHHHHHHhcCchHHHHHHHHHHHHHHHHHHHHHhhC
Confidence 00 0000000 001222222222211122222 1233455443 2333 35677888887654
Q ss_pred CCCCHH---HHHHHHHHHH-hCCChHHHHHHHHHHHH
Q 006120 265 KPDYAD---AHCDLASALH-AMGEDERAIEVFQKAID 297 (660)
Q Consensus 265 ~p~~~~---~~~~la~~~~-~~g~~~~A~~~~~~al~ 297 (660)
.|.+|. ...|.+..|. -+++.++|....++|+.
T Consensus 168 ~pthPirLGLaLNfSVFyyEiln~~~~Ac~lAk~Afd 204 (236)
T 3iqu_A 168 PPTNPIRLGLALNFSVFHYEIANSPEEAISLAKTTFD 204 (236)
T ss_dssp CTTCHHHHHHHHHHHHHHHHTSSCHHHHHHHHHHHHH
T ss_pred CCCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 566653 3345555554 57999999887777654
No 348
>1bjf_A Neurocalcin delta; calcium-binding, myristoylation, neuronal specific guanylate cyclase activator; 2.40A {Bos taurus} SCOP: a.39.1.5
Probab=28.51 E-value=79 Score=27.77 Aligned_cols=101 Identities=15% Similarity=0.288 Sum_probs=53.1
Q ss_pred HHHHHhhhhccCCCcccccchhhhhhhcccCCCCHHHHHHhhhhhhcccccCCCCccchhccHHHHHHHhHHHhcc----
Q 006120 461 AINERILSVLDETGSARVDLGMFYAILAPICSGSPEKRKRVAFDALLWRPVNEGSTQVRKVDAVRYIKLLRAVYIP---- 536 (660)
Q Consensus 461 ~l~~~~l~~hDr~g~~~fev~~y~~~~~~~~~~~~~~r~r~~~d~~~~~~~~~~~a~~i~~D~~~~l~dL~~~~~~---- 536 (660)
..+..+|..+|.+|+|.+..-=|...+...........++..+..+ +.++. ..|-..+...++..+....+.
T Consensus 63 ~~~~~~f~~~D~d~~g~i~~~Ef~~~~~~~~~~~~~~~~~~~f~~~---D~d~~-G~I~~~E~~~~~~~~~~~~g~~~~~ 138 (193)
T 1bjf_A 63 KFAEHVFRTFDANGDGTIDFREFIIALSVTSRGKLEQKLKWAFSMY---DLDGN-GYISKAEMLEIVQAIYKMVSSVMKM 138 (193)
T ss_dssp HHHHHHHHHHCSSCSSEEEHHHHHHHHHHHTSSCHHHHHHHHHHHH---CTTCS-SCEEHHHHHHHHHHHHTTCCCTTTS
T ss_pred HHHHHHHHHhCCCCCCcCcHHHHHHHHHHHcCCCHHHHHHHHHhhc---CCCCC-CeECHHHHHHHHHHHHHHhccccCC
Confidence 3456788899999887665544433333332334445666655521 22221 234444444455444222221
Q ss_pred CC-C------chhhhhhhccCCCcccchhHHhhhcc
Q 006120 537 SH-G------VSEMMEVHGEADSSMVSLSEFLVMFD 565 (660)
Q Consensus 537 ~~-~------~~~~~~~~~~~~~~~~~~~~~~~~~~ 565 (660)
+. . +..++...-.++.-.|+|.||+.++.
T Consensus 139 ~~~~~~~~~~~~~~f~~~D~d~dG~I~~~Ef~~~~~ 174 (193)
T 1bjf_A 139 PEDESTPEKRTEKIFRQMDTNRDGKLSLEEFIRGAK 174 (193)
T ss_dssp CGGGSSHHHHHHHHHHHSCTTCSSEECHHHHHHHHH
T ss_pred CcccccHHHHHHHHHHHhCCCCCCeEeHHHHHHHHh
Confidence 10 0 33444444456666899999999654
No 349
>2br9_A 14-3-3E, 14-3-3 protein epsilon; cell regulator protein, 14-3-3, phosphoserine, structural GE consortium, SGC, ywhae; HET: SEP; 1.75A {Homo sapiens} PDB: 3ual_A* 2o98_A* 3m50_A* 3m51_A* 3axy_C*
Probab=28.49 E-value=3.6e+02 Score=25.06 Aligned_cols=46 Identities=17% Similarity=0.169 Sum_probs=31.4
Q ss_pred HHHHHHHHHHHHh-----CCCCHH---HHHHHHHHHHh-CCChHHHHHHHHHHHH
Q 006120 252 RAAVKALEEAIFI-----KPDYAD---AHCDLASALHA-MGEDERAIEVFQKAID 297 (660)
Q Consensus 252 ~~A~~~~~~al~~-----~p~~~~---~~~~la~~~~~-~g~~~~A~~~~~~al~ 297 (660)
+.|...|++|+++ .|.+|. ...|.+..|.. +++.++|....++++.
T Consensus 147 e~a~~aY~~A~~iA~~~L~pthPirLgLaLN~SVF~yEil~~~~~A~~lAk~afd 201 (234)
T 2br9_A 147 ENSLVAYKAASDIAMTELPPTHPIRLGLALNFSVFYYEILNSPDRACRLAKAAFD 201 (234)
T ss_dssp HHHHHHHHHHHHHHHHHSCTTCHHHHHHHHHHHHHHHHTSCCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHccCCCCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 4677788888754 566653 33455555554 8999999988877764
No 350
>2jnf_A Troponin C; stretch activated muscle contraction, EF-hand, metal binding protein; NMR {Lethocerus indicus} PDB: 2k2a_A
Probab=28.45 E-value=39 Score=28.66 Aligned_cols=100 Identities=16% Similarity=0.218 Sum_probs=51.1
Q ss_pred HHHHhhhhccCCCcccccchhhhhhhcccCCC-----CHHHHHHhhhhhhcccccCCCCccchhccHHHHHHHhHHHhcc
Q 006120 462 INERILSVLDETGSARVDLGMFYAILAPICSG-----SPEKRKRVAFDALLWRPVNEGSTQVRKVDAVRYIKLLRAVYIP 536 (660)
Q Consensus 462 l~~~~l~~hDr~g~~~fev~~y~~~~~~~~~~-----~~~~r~r~~~d~~~~~~~~~~~a~~i~~D~~~~l~dL~~~~~~ 536 (660)
-+..++..+|.+++|.+..--|...+...... .....++..|..+ +.++. ..|-..+...++..+-.- .+
T Consensus 51 ~~~~l~~~~D~~~~g~i~~~eF~~~~~~~~~~~~~~~~~~~~~~~~F~~~---D~d~~-G~I~~~el~~~l~~~g~~-~~ 125 (158)
T 2jnf_A 51 TIRQLIDEFDPFGNGDIDFDSFKIIGARFLGEEVNPEQMQQELREAFRLY---DKEGN-GYISTDVMREILAELDET-LS 125 (158)
T ss_dssp HHHHHHHHHCTTCCSEECHHHHHHHHHHHCCCCCCTTTTSSTHHHHHHHH---CSSSS-SSEEHHHHHHHHHHHCTT-CC
T ss_pred HHHHHHHHhCCCCCCcCcHHHHHHHHHHHhccccchhhHHHHHHHHHHHh---CCCCC-CeEcHHHHHHHHHHhCCc-CC
Confidence 34567778888877765544442233222111 2233455555522 22221 345555555555543210 11
Q ss_pred CCCchhhhhhhccCCCcccchhHHhhhccC
Q 006120 537 SHGVSEMMEVHGEADSSMVSLSEFLVMFDD 566 (660)
Q Consensus 537 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 566 (660)
...+..++..-..++.-.|+|.||+.++..
T Consensus 126 ~~~~~~~~~~~D~d~dg~i~~~eF~~~~~~ 155 (158)
T 2jnf_A 126 SEDLDAMIDEIDADGSGTVDFEEFMGVMTG 155 (158)
T ss_dssp HHHHHHHHHHHCSSCCSEECSHHHHHHTSS
T ss_pred HHHHHHHHHHhCCCCCCcEeHHHHHHHHhc
Confidence 222344555555566668999999997653
No 351
>2hpk_A Photoprotein berovin; structural genomics, PSI, protein structure initiative, southeast collaboratory for structural genomics, secsg; 2.00A {Beroe abyssicola}
Probab=28.37 E-value=97 Score=27.71 Aligned_cols=93 Identities=10% Similarity=0.027 Sum_probs=49.3
Q ss_pred hhhhccCCCcccccchhhhhhhc---------cc-CCCCHHH-HHHhhhhhhcccccCCCCccchhccHHHHHHHhHHHh
Q 006120 466 ILSVLDETGSARVDLGMFYAILA---------PI-CSGSPEK-RKRVAFDALLWRPVNEGSTQVRKVDAVRYIKLLRAVY 534 (660)
Q Consensus 466 ~l~~hDr~g~~~fev~~y~~~~~---------~~-~~~~~~~-r~r~~~d~~~~~~~~~~~a~~i~~D~~~~l~dL~~~~ 534 (660)
++...|.+|+|.+..-=|...+. .. ......+ .++..|.. .+.++. ..|-..+...++..+-
T Consensus 86 lf~~~D~d~dg~i~~~EF~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~F~~---~D~d~~-G~Is~~El~~~l~~~g--- 158 (208)
T 2hpk_A 86 FFLHKGVEPVNGLLREDWVEANRVFAEAERERERRGEPSLIALLSNSYYDV---LDDDGD-GTVDVDELKTMMKAFD--- 158 (208)
T ss_dssp HHHHTTCBTTTBEEGGGHHHHHHHHHHHHHHHHHTTCCCHHHHHHHHHHHH---HCTTCS-SSBCHHHHHHHHHHTT---
T ss_pred HHHHhCCCCCCeEcHHHHHHHHHHHhhhhhhhhccCChHHHHHHHHHHHHH---hCCCCC-CcCCHHHHHHHHHHhC---
Confidence 34888988777655433322222 11 1112222 35555552 122221 3455555555665543
Q ss_pred ccCCCchhhhhhhccCCCcccchhHHhhhcc
Q 006120 535 IPSHGVSEMMEVHGEADSSMVSLSEFLVMFD 565 (660)
Q Consensus 535 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 565 (660)
.+...+..++..-..++.-.|+|.||+.++.
T Consensus 159 ~~~~~~~~~~~~~D~d~dG~I~~~EF~~~~~ 189 (208)
T 2hpk_A 159 VPQEAAYTFFEKADTDKSGKLERTELVHLFR 189 (208)
T ss_dssp SCTTHHHHHHHHHCTTCCSSBCHHHHHHHHH
T ss_pred cCHHHHHHHHHHhCCCCCCcCcHHHHHHHHH
Confidence 3333445555555556667899999999775
No 352
>3khe_A Calmodulin-like domain protein kinase isoform 3; calcium dependent kinase, structural genomics, structural GE consortium, SGC, ATP-binding; 1.95A {Toxoplasma gondii}
Probab=28.28 E-value=26 Score=31.02 Aligned_cols=103 Identities=13% Similarity=0.174 Sum_probs=51.5
Q ss_pred HHHHHHHHHHhhhhccCCCcccccchhhhhhhcccCCCCHHHHHHhhhhhhcccccCCCCccchhccHHHHHHHhHHHhc
Q 006120 456 QGAVKAINERILSVLDETGSARVDLGMFYAILAPICSGSPEKRKRVAFDALLWRPVNEGSTQVRKVDAVRYIKLLRAVYI 535 (660)
Q Consensus 456 ~H~v~~l~~~~l~~hDr~g~~~fev~~y~~~~~~~~~~~~~~r~r~~~d~~~~~~~~~~~a~~i~~D~~~~l~dL~~~~~ 535 (660)
..+....+..++..+|.+|+|.+..--|...+...........++..|.. .+.++. ..|-..+...++. ..-.
T Consensus 82 ~~~~~~~~~~~~~~~D~d~~g~i~~~ef~~~~~~~~~~~~~~~~~~~F~~---~D~d~~-G~I~~~E~~~~l~---~~~~ 154 (191)
T 3khe_A 82 SSQIEAEVDHILQSVDFDRNGYIEYSEFVTVCMDKQLLLSRERLLAAFQQ---FDSDGS-GKITNEELGRLFG---VTEV 154 (191)
T ss_dssp HHHHHHHHHHHHHHTCTTCSSSEEHHHHHHHHSCHHHHCCHHHHHHHHHH---HCTTCS-SEECHHHHHHHTT---SSCC
T ss_pred chhhHHHHHHHHHHhCCCCCCcCCHHHHHHHHHHhcccchHHHHHHHHHH---HCCCCc-CcCCHHHHHHHHc---cCCC
Confidence 34555667889999999977765544442233222111223455555552 122222 2233333333222 0000
Q ss_pred cCCCchhhhhhhccCCCcccchhHHhhhcc
Q 006120 536 PSHGVSEMMEVHGEADSSMVSLSEFLVMFD 565 (660)
Q Consensus 536 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 565 (660)
+...+..++..-..++.-.|+|.||+.++.
T Consensus 155 ~~~~~~~~~~~~D~~~dg~i~~~eF~~~~~ 184 (191)
T 3khe_A 155 DDETWHQVLQECDKNNDGEVDFEEFVEMMQ 184 (191)
T ss_dssp CHHHHHHHHHHHCTTCSSSEEHHHHHHHHH
T ss_pred CHHHHHHHHHHhCCCCCCCCCHHHHHHHHH
Confidence 111123355555556677899999999765
No 353
>3uzd_A 14-3-3 protein gamma; structural genomics, SGC, structural genomics consortium, MA alpha, phosphoserine, phosphothreonine; HET: SEP; 1.86A {Homo sapiens} PDB: 4e2e_A 2b05_A* 2c63_A* 2c74_A* 4dnk_A 4gnt_A 2bq0_A 2c23_A 2c1n_A* 2c1j_A* 2btp_A*
Probab=28.11 E-value=3.8e+02 Score=25.17 Aligned_cols=47 Identities=21% Similarity=0.347 Sum_probs=31.1
Q ss_pred HHHHHHHHHHHH-----hCCCCHH---HHHHHHHHHHHhcCCCHHHHHHHHHHHHc
Q 006120 286 ERAIEVFQKAID-----LKPGHVD---ALYNLGGLYMDLGAGETEEAKKALKEALK 333 (660)
Q Consensus 286 ~~A~~~~~~al~-----~~p~~~~---a~~~La~~~~~~~~g~~~eA~~~~~~al~ 333 (660)
+.|...|++|.. +.|.+|- ...+.+..|... .++.++|....++|+.
T Consensus 148 ~~a~~aY~~A~~iA~~~L~pthPirLGLaLNfSVFyYEI-ln~~~~Ac~lAk~Afd 202 (248)
T 3uzd_A 148 ESSEKAYSEAHEISKEHMQPTHPIRLGLALNYSVFYYEI-QNAPEQACHLAKTAFD 202 (248)
T ss_dssp HHHHHHHHHHHHHHHHHSCTTCHHHHHHHHHHHHHHHHT-SCCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhhCCCCCcHHHHHHHHHHHHHHHH-cCCHHHHHHHHHHHHH
Confidence 566777777765 4577763 344555566553 2899999888877765
No 354
>1rut_X Flinc4, fusion protein of LMO4 protein and LIM domain- binding protein 1; B-tandem zipper, protein binding; 1.30A {Mus musculus} SCOP: g.39.1.3 g.39.1.3 g.39.1.3 g.39.1.3 PDB: 2dfy_X 2xjz_I 2xjy_B
Probab=28.00 E-value=22 Score=32.21 Aligned_cols=47 Identities=21% Similarity=0.392 Sum_probs=32.8
Q ss_pred cccCccccCC-Ccccccccccc-ccccccccccccccccccccCCCCCCC
Q 006120 580 LEAGDRNRHG-RHVCSVCRYPI-IGSRFKEMKSHFSLCSQCYSEGKVPPT 627 (660)
Q Consensus 580 ~~~~~~~~~~-~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~ 627 (660)
+.+.++.-|- --+|..|.-++ .|.+|.+.... .+|..||.+--.|..
T Consensus 86 i~a~~~~~H~~CF~C~~C~~~L~~g~~f~~~~g~-~yC~~c~~~~~~~~~ 134 (188)
T 1rut_X 86 MRAQGNVYHLKCFTCSTCRNRLVPGDRFHYINGS-LFCEHDRPTALINGH 134 (188)
T ss_dssp EEETTEEECGGGCBCTTTCCBCCTTCEEEEETTE-EEEGGGCCTTTC---
T ss_pred EEcCCCEEeCCCCeECCCCCCCCCCCeEEEECCe-EECHHHHHHHhcccc
Confidence 3456677776 45899999999 48999876544 789999976544443
No 355
>1wfd_A Hypothetical protein 1500032H18; MIT domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Mus musculus} SCOP: a.7.14.1
Probab=27.90 E-value=83 Score=24.64 Aligned_cols=33 Identities=18% Similarity=0.051 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHhccCCCchhchHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh
Q 006120 175 YREAKEEYLLALEAAETGGNQWAYLLPQIYVNLGIALEGEGMVLSACEYYRESAIL 230 (660)
Q Consensus 175 ~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~ 230 (660)
.+.|+.+..+|++.+.. |+|++|+.+|..+++.
T Consensus 12 l~~Ai~lv~~Ave~D~~-----------------------g~y~eAl~~Y~~Aie~ 44 (93)
T 1wfd_A 12 STAAVAVLKRAVELDAE-----------------------SRYQQALVCYQEGIDM 44 (93)
T ss_dssp HHHHHHHHHHHHHHHHT-----------------------TCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHh-----------------------CCHHHHHHHHHHHHHH
No 356
>2crb_A Nuclear receptor binding factor 2; NRBF-2, MIT domain, helix bundle, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: a.7.16.1
Probab=27.76 E-value=1.1e+02 Score=23.89 Aligned_cols=29 Identities=14% Similarity=0.157 Sum_probs=20.8
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 006120 125 FDGHMAIGRVLYEHQLFKEALVSFKRACE 153 (660)
Q Consensus 125 ~~~~~~lg~~~~~~g~~~~A~~~~~~al~ 153 (660)
+..+-..+..+...|+|++|+++.+++..
T Consensus 15 AH~~~RrAe~ll~~gkydeAIech~kAa~ 43 (97)
T 2crb_A 15 AHQQSRRADRLLAAGKYEEAISCHRKATT 43 (97)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred hhHhhhHHHHHHhcCCHHHHHHHHHHHHH
Confidence 44556677788888888888877776653
No 357
>2wvi_A Mitotic checkpoint serine/threonine-protein kinase BUB1 beta; tumor suppressor, TPR, apoptosis, cell division, cell cycle, kinetochore, transferase; 1.80A {Homo sapiens} PDB: 3si5_A
Probab=27.74 E-value=3.1e+02 Score=23.97 Aligned_cols=46 Identities=7% Similarity=0.104 Sum_probs=29.2
Q ss_pred HHHHHHHHHHhC--CCCHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHccc
Q 006120 288 AIEVFQKAIDLK--PGHVDALYNLGGLYMDLGAGETEEAKKALKEALKMT 335 (660)
Q Consensus 288 A~~~~~~al~~~--p~~~~a~~~La~~~~~~~~g~~~eA~~~~~~al~l~ 335 (660)
+...|..+.... -..+..|...|..+... |++.+|...|+.+++..
T Consensus 79 p~~if~~L~~~~IG~~~AlfY~~wA~~lE~~--~~~~~A~~Iy~~Gi~~~ 126 (164)
T 2wvi_A 79 PLDMYSYLHNQGIGVSLAQFYISWAEEYEAR--ENFRKADAIFQEGIQQK 126 (164)
T ss_dssp HHHHHHHHHHTTSSTTBHHHHHHHHHHHHHT--TCHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHCCcchhhHHHHHHHHHHHHHc--CCHHHHHHHHHHHHHcC
Confidence 445555555433 34466666666677666 77777777777777665
No 358
>3qrx_A Centrin; calcium-binding, EF-hand, cell division, calcium binding, ME binding protein-toxin complex; 2.20A {Chlamydomonas reinhardtii} PDB: 2ggm_A 2ami_A 1zmz_A
Probab=27.68 E-value=27 Score=30.13 Aligned_cols=100 Identities=17% Similarity=0.262 Sum_probs=49.6
Q ss_pred HHHHhhhhccCCCcccccchhhhhhhcccCCC-CHHHHHHhhhhhhcccccCCCCccchhccHHHHHHHhHHHhccCCCc
Q 006120 462 INERILSVLDETGSARVDLGMFYAILAPICSG-SPEKRKRVAFDALLWRPVNEGSTQVRKVDAVRYIKLLRAVYIPSHGV 540 (660)
Q Consensus 462 l~~~~l~~hDr~g~~~fev~~y~~~~~~~~~~-~~~~r~r~~~d~~~~~~~~~~~a~~i~~D~~~~l~dL~~~~~~~~~~ 540 (660)
-+..++..+|.+|+|.+..--|...+...... .....++..+. ..+.++. ..|-..+...++..+- .-.+...+
T Consensus 65 ~~~~~~~~~d~~~~g~i~~~eF~~~~~~~~~~~~~~~~~~~~F~---~~D~d~~-G~i~~~el~~~l~~~g-~~~~~~~~ 139 (169)
T 3qrx_A 65 EIKKMISEIDKDGSGTIDFEEFLTMMTAKMGERDSREEILKAFR---LFDDDNS-GTITIKDLRRVAKELG-ENLTEEEL 139 (169)
T ss_dssp HHHHHHHHHCSSSSSSEEHHHHHHHHHHHHHHHHHHHHHHHHHH---HHCTTCS-SSBCHHHHHHHHHHTT-CCCCHHHH
T ss_pred HHHHHHHHhcCCCCCcCCHHHHHHHHHHHhcccCcHHHHHHHHH---HhCCCCC-CcCCHHHHHHHHHHcC-CCCCHHHH
Confidence 34567778888877765544442222221100 11234444444 1222221 3444555555554432 11122223
Q ss_pred hhhhhhhccCCCcccchhHHhhhccC
Q 006120 541 SEMMEVHGEADSSMVSLSEFLVMFDD 566 (660)
Q Consensus 541 ~~~~~~~~~~~~~~~~~~~~~~~~~~ 566 (660)
.+++..-..++.-.|||.||+.++..
T Consensus 140 ~~~~~~~D~~~dg~i~~~eF~~~~~~ 165 (169)
T 3qrx_A 140 QEMIAEADRNDDNEIDEDEFIRIMKK 165 (169)
T ss_dssp HHHHHHHCCSSSSCBCHHHHHHHHC-
T ss_pred HHHHHHhCCCCCCCEeHHHHHHHHHh
Confidence 44555555667778999999997764
No 359
>1wyh_A SLIM 2, skeletal muscle LIM-protein 2; structural genomics, riken structural genomics/proteomics initiative, RSGI, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=27.41 E-value=17 Score=26.77 Aligned_cols=41 Identities=32% Similarity=0.652 Sum_probs=27.9
Q ss_pred cccCccccCCC-ccccccccccccccccccccccccccccccC
Q 006120 580 LEAGDRNRHGR-HVCSVCRYPIIGSRFKEMKSHFSLCSQCYSE 621 (660)
Q Consensus 580 ~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 621 (660)
+.+.++.-|.. -+|++|+-|+.+..|.+... --.|..||.+
T Consensus 22 ~~a~~~~~H~~CF~C~~C~~~L~~~~~~~~~~-~~yC~~cy~~ 63 (72)
T 1wyh_A 22 LEYGGQTWHEHCFLCSGCEQPLGSRSFVPDKG-AHYCVPCYEN 63 (72)
T ss_dssp ECSTTCCEETTTCBCTTTCCBTTTSCEEEETT-EEEEHHHHHH
T ss_pred EEECccccCcccCeECCCCCcCCCCccCCcCC-eEECHHHHHH
Confidence 45566677763 57888888888887776533 3568888753
No 360
>3na7_A HP0958; flagellar biogenesis, flagellum export, C4 Zn-ribbon, coiled post-transcriptional, gene regulation, chaperone; HET: EPE; 2.20A {Helicobacter pylori}
Probab=27.17 E-value=13 Score=35.70 Aligned_cols=30 Identities=17% Similarity=0.477 Sum_probs=24.6
Q ss_pred Cccccccccccccccccccccc--cccccccc
Q 006120 590 RHVCSVCRYPIIGSRFKEMKSH--FSLCSQCY 619 (660)
Q Consensus 590 ~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~ 619 (660)
+.+|+.|+..|...+|.++... .-.|..|-
T Consensus 198 ~~~C~GC~~~lppq~~~~i~~~~~Iv~Cp~Cg 229 (256)
T 3na7_A 198 KQACGGCFIRLNDKIYTEVLTSGDMITCPYCG 229 (256)
T ss_dssp TTBCTTTCCBCCHHHHHHHHHSSSCEECTTTC
T ss_pred CCccCCCCeeeCHHHHHHHHCCCCEEECCCCC
Confidence 3489999999999999998763 67899983
No 361
>1g47_A Pinch protein; LIM domain, Zn finger, cell adhesion; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=27.12 E-value=18 Score=27.00 Aligned_cols=39 Identities=18% Similarity=0.418 Sum_probs=26.2
Q ss_pred ccCccccCCC-cccccccccccccccccccccccccccccc
Q 006120 581 EAGDRNRHGR-HVCSVCRYPIIGSRFKEMKSHFSLCSQCYS 620 (660)
Q Consensus 581 ~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 620 (660)
.+.++.-|.. -+|+.|+-|+.+..|.+.... ..|..||.
T Consensus 29 ~a~~~~~H~~CF~C~~C~~~L~~~~~~~~~g~-~yC~~~y~ 68 (77)
T 1g47_A 29 NSNGELYHEQCFVCAQCFQQFPEGLFYEFEGR-KYCEHDFQ 68 (77)
T ss_dssp EETTEEECTTTCCCTTTCCCCGGGCSEEETTE-EECHHHHH
T ss_pred EeCccEeccccCeECCCCCCCCCCCeEeECCe-EeCHHHHH
Confidence 4556666763 477888888887777765443 46777774
No 362
>1o9d_A 14-3-3-like protein C; protein-binding, fusicoccin, 14-3-3 family, activating drug; HET: TPO; 2.3A {Nicotiana tabacum} SCOP: a.118.7.1 PDB: 1o9c_A* 1o9e_A* 1o9f_A* 3e6y_A*
Probab=27.11 E-value=4.1e+02 Score=25.17 Aligned_cols=46 Identities=17% Similarity=0.207 Sum_probs=31.5
Q ss_pred HHHHHHHHHHHHh-----CCCCHH---HHHHHHHHHHh-CCChHHHHHHHHHHHH
Q 006120 252 RAAVKALEEAIFI-----KPDYAD---AHCDLASALHA-MGEDERAIEVFQKAID 297 (660)
Q Consensus 252 ~~A~~~~~~al~~-----~p~~~~---~~~~la~~~~~-~g~~~~A~~~~~~al~ 297 (660)
+.|...|+.|+.+ .|.+|. ...|.+..|.. +++.++|....++++.
T Consensus 152 e~a~~aY~~A~~iA~~~L~pthPirLGLaLNfSVFyYEiln~~~~Ac~lAk~Afd 206 (260)
T 1o9d_A 152 ESTLTAYKAAQDIATTELAPTHPIRLGLALNFSVFYYEILNSPDRACNLAKQAFD 206 (260)
T ss_dssp HHHHHHHHHHHHHHHHHSCTTCHHHHHHHHHHHHHHHHTSCCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHH
Confidence 4677888888754 566653 33455555554 7999999988888764
No 363
>2cwy_A Hypothetical protein TTHA0068; structural genomics, conserved hypothetical protein, NPPSFA; 1.85A {Thermus thermophilus} SCOP: a.246.2.1 PDB: 2cxd_A
Probab=27.09 E-value=1.3e+02 Score=23.61 Aligned_cols=61 Identities=18% Similarity=0.095 Sum_probs=32.5
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHHHhccCCCchhchHHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Q 006120 165 AGNCLYVLGRYREAKEEYLLALEAAETGGNQWAYLLPQIYVNLGIALEGEGMVLSACEYYRESAI 229 (660)
Q Consensus 165 la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~ 229 (660)
.|..++..|+|-+|-+.++.+....|.. ........+....|......|+. |...+.+++.
T Consensus 7 ~~~~lfn~g~~~eaHEvlE~~W~~~~~~--~~~~~qGLIq~Ava~~h~~~gn~--a~~ll~~a~~ 67 (94)
T 2cwy_A 7 EVLGLWRAGRYYEVHEVLEPYWLKATGE--ERRLLQGVILLAAALHQRRLGRP--GLRNLRKAEA 67 (94)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHCCHH--HHHHHHHHHHHHHHHHHHHTTCC--CHHHHHHHHH
T ss_pred HHHHHHhCCChHHHHHHHHHHHhhCCCc--hHHHHHHHHHHHHHHHHHHcCcH--HHHHHHHHHH
Confidence 3555566677777777777776665331 11101233333344444456665 6666666655
No 364
>2crb_A Nuclear receptor binding factor 2; NRBF-2, MIT domain, helix bundle, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: a.7.16.1
Probab=26.59 E-value=1.1e+02 Score=23.85 Aligned_cols=29 Identities=17% Similarity=0.056 Sum_probs=22.5
Q ss_pred HHHHHHHHHHHHHHCCCHHHHHHHHHHHH
Q 006120 200 LPQIYVNLGIALEGEGMVLSACEYYRESA 228 (660)
Q Consensus 200 ~~~~~~~la~~~~~~g~~~~A~~~~~~al 228 (660)
.+-.+-..+..+...|+|++|+++.+++.
T Consensus 14 ~AH~~~RrAe~ll~~gkydeAIech~kAa 42 (97)
T 2crb_A 14 LAHQQSRRADRLLAAGKYEEAISCHRKAT 42 (97)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred hhhHhhhHHHHHHhcCCHHHHHHHHHHHH
Confidence 56667778888888888888888777654
No 365
>2lvv_A Flagellar calcium-binding protein TB-24; EF-hand, metal binding protein; NMR {Trypanosoma brucei brucei}
Probab=26.28 E-value=47 Score=30.65 Aligned_cols=102 Identities=15% Similarity=0.098 Sum_probs=53.4
Q ss_pred HHHHHHhhhhc-----cCCCcccccchhhhhhhcccCCCCHHHHHHhhhhhhcccccCCCCccchhccHHHHHHHhHHHh
Q 006120 460 KAINERILSVL-----DETGSARVDLGMFYAILAPICSGSPEKRKRVAFDALLWRPVNEGSTQVRKVDAVRYIKLLRAVY 534 (660)
Q Consensus 460 ~~l~~~~l~~h-----Dr~g~~~fev~~y~~~~~~~~~~~~~~r~r~~~d~~~~~~~~~~~a~~i~~D~~~~l~dL~~~~ 534 (660)
..++..+|... |.+|+|.+..--|...+.......-...++..|. ..+.++. ..|-..+...++..+...=
T Consensus 91 ~~~~~~~f~~~~~~~~D~d~~G~I~~~EF~~~~~~~~~~~~~~~l~~~F~---~~D~d~d-G~Is~~El~~~l~~~~~~g 166 (226)
T 2lvv_A 91 PDIVQRAFDKAKDLGNKVKGVGEEDLVEFLEFRLMLCYIYDIFELTVMFD---TMDKDGS-LLLELQEFKEALPKLKEWG 166 (226)
T ss_dssp HHHHHHHHHHHHHHHHHHSCCCCCSCBCHHHHHHHHHHHHHHHHHHHHHH---HHSCSSC-CEECHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHhcccCCCCCCCCcCCHHHHHHHHHHHHhccCHHHHHHHHH---HHcCCCC-CeEcHHHHHHHHHHHhhcC
Confidence 34555566655 7776665443333111110000001124444444 2233322 3555666666776664333
Q ss_pred ccCCCchhhhhhhccCCCcccchhHHhhhcc
Q 006120 535 IPSHGVSEMMEVHGEADSSMVSLSEFLVMFD 565 (660)
Q Consensus 535 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 565 (660)
.+...+..++..-..++.-.|+|.||+.++.
T Consensus 167 ~~~~e~~~~~~~~D~d~dG~Is~~EF~~~~~ 197 (226)
T 2lvv_A 167 VDITDATTVFNEIDTNGSGVVTFDEFSCWAV 197 (226)
T ss_dssp CCCCSCHHHHHHHCCSCSSCEEHHHHHHHHH
T ss_pred CCHHHHHHHHHHhCCCCCCcEeHHHHHHHHH
Confidence 3334467777766667777899999999765
No 366
>3uzd_A 14-3-3 protein gamma; structural genomics, SGC, structural genomics consortium, MA alpha, phosphoserine, phosphothreonine; HET: SEP; 1.86A {Homo sapiens} PDB: 4e2e_A 2b05_A* 2c63_A* 2c74_A* 4dnk_A 4gnt_A 2bq0_A 2c23_A 2c1n_A* 2c1j_A* 2btp_A*
Probab=26.05 E-value=4.2e+02 Score=24.91 Aligned_cols=55 Identities=11% Similarity=0.088 Sum_probs=34.3
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHH-cCCHHHHHHHH
Q 006120 128 HMAIGRVLYEHQLFKEALVSFKRACELQPT-DVRPHFRAGNCLYV-LGRYREAKEEY 182 (660)
Q Consensus 128 ~~~lg~~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~~la~~~~~-~g~~~~A~~~~ 182 (660)
+..+|.+.-+.++|++...+.+++.+.++. ..+=...+..+|-. .|....+...+
T Consensus 7 lv~~AklaeqaeRyddM~~~Mk~v~~~~~eLt~EERnLLSvAYKNvig~rR~swRii 63 (248)
T 3uzd_A 7 LVQKARLAEQAERYDDMAAAMKNVTELNEPLSNEERNLLSVAYKNVVGARRSSWRVI 63 (248)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHTTCSCCCHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhcCHHHHHHHHHHHHhcCCcCCHHHHHHHHHHHHhhcccchHHHHHH
Confidence 456778888888999888888888887655 33444455555432 23333344433
No 367
>3fwb_A Cell division control protein 31; gene gating, complex, cell cycle, cell division, mitosis, MR transport, nuclear pore complex, nucleus, phosphoprotein; 2.50A {Saccharomyces cerevisiae} SCOP: a.39.1.5 PDB: 2gv5_A 2doq_A 3fwc_A
Probab=25.90 E-value=40 Score=28.58 Aligned_cols=100 Identities=15% Similarity=0.222 Sum_probs=51.6
Q ss_pred HHHHhhhhccCCCcccccchhhhhhhccc-CCCCHHHHHHhhhhhhcccccCCCCccchhccHHHHHHHhHHHhccCCCc
Q 006120 462 INERILSVLDETGSARVDLGMFYAILAPI-CSGSPEKRKRVAFDALLWRPVNEGSTQVRKVDAVRYIKLLRAVYIPSHGV 540 (660)
Q Consensus 462 l~~~~l~~hDr~g~~~fev~~y~~~~~~~-~~~~~~~r~r~~~d~~~~~~~~~~~a~~i~~D~~~~l~dL~~~~~~~~~~ 540 (660)
-+..++...|.+|+|.+..--|...+... ........++..+..+ +.++. ..|-..+...++..+-. -.+..-+
T Consensus 60 ~~~~l~~~~d~~~~g~i~~~eF~~~~~~~~~~~~~~~~~~~~F~~~---D~d~~-G~i~~~el~~~l~~~~~-~~~~~~~ 134 (161)
T 3fwb_A 60 EILDLIDEYDSEGRHLMKYDDFYIVMGEKILKRDPLDEIKRAFQLF---DDDHT-GKISIKNLRRVAKELGE-TLTDEEL 134 (161)
T ss_dssp HHHHHHHHHCTTSSSCEEHHHHHHHHHHHHHTCCHHHHHHHHHHHH---CTTCS-SEECHHHHHHHHHHTTC-CCCHHHH
T ss_pred HHHHHHHHhCcCCCCeEeHHHHHHHHHHHHhcCCcHHHHHHHHHHH---cCCCC-CeEeHHHHHHHHHHhCC-CCCHHHH
Confidence 35567778888877665443332222221 1223344566665522 22221 34555555555554321 1111223
Q ss_pred hhhhhhhccCCCcccchhHHhhhccC
Q 006120 541 SEMMEVHGEADSSMVSLSEFLVMFDD 566 (660)
Q Consensus 541 ~~~~~~~~~~~~~~~~~~~~~~~~~~ 566 (660)
..++..-..++.-.|+|.||+.++..
T Consensus 135 ~~~~~~~d~~~~g~i~~~eF~~~~~~ 160 (161)
T 3fwb_A 135 RAMIEEFDLDGDGEINENEFIAICTD 160 (161)
T ss_dssp HHHHHTTCSSSSSSEEHHHHHHHHHH
T ss_pred HHHHHHhCCCCCCcCcHHHHHHHHhc
Confidence 44555555566778999999998753
No 368
>2d8n_A Recoverin; structural genomics, NPPSFA, national project on protein STR and functional analyses, riken structural genomics/proteomi initiative; 2.20A {Homo sapiens} PDB: 2i94_A 1iku_A* 1jsa_A* 1omr_A 1rec_A 1la3_A* 1omv_A 2het_A
Probab=25.86 E-value=78 Score=28.32 Aligned_cols=101 Identities=14% Similarity=0.239 Sum_probs=52.2
Q ss_pred HHHHHhhhhccCCCcccccchhhhhhhcccCCCCHHHHHHhhhhhhcccccCCCCccchhccHHHHHHHhHHHhc-----
Q 006120 461 AINERILSVLDETGSARVDLGMFYAILAPICSGSPEKRKRVAFDALLWRPVNEGSTQVRKVDAVRYIKLLRAVYI----- 535 (660)
Q Consensus 461 ~l~~~~l~~hDr~g~~~fev~~y~~~~~~~~~~~~~~r~r~~~d~~~~~~~~~~~a~~i~~D~~~~l~dL~~~~~----- 535 (660)
..+..+|..+|.+|+|.+..-=|...+...........++..+. ..+.++ ...|-..+...++..+....+
T Consensus 71 ~~~~~~f~~~D~d~~G~i~~~Ef~~~~~~~~~~~~~~~~~~~f~---~~D~d~-~G~I~~~E~~~~l~~~~~~~g~~~~~ 146 (207)
T 2d8n_A 71 AYAQHVFRSFDSNLDGTLDFKEYVIALHMTTAGKTNQKLEWAFS---LYDVDG-NGTISKNEVLEIVMAIFKMITPEDVK 146 (207)
T ss_dssp HHHHHHHHHHCTTCCSEEEHHHHHHHHHHHSCSSSSTTHHHHHH---HHCTTC-SSEECHHHHHHHHHHHHHHSCHHHHH
T ss_pred HHHHHHHHHhcCCCCCeEeHHHHHHHHHHHcCCCHHHHHHHHHH---HhcCCC-CCeEcHHHHHHHHHHHHHHhccccCC
Confidence 34667888999998776554333222222211121223444433 112222 134555555566665533323
Q ss_pred --cC------CCchhhhhhhccCCCcccchhHHhhhcc
Q 006120 536 --PS------HGVSEMMEVHGEADSSMVSLSEFLVMFD 565 (660)
Q Consensus 536 --~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 565 (660)
+. .-+..++...-.++.-.|+|.||+.++.
T Consensus 147 ~l~~~~~~~~~~~~~~f~~~D~d~dG~I~~~Ef~~~~~ 184 (207)
T 2d8n_A 147 LLPDDENTPEKRAEKIWKYFGKNDDDKLTEKEFIEGTL 184 (207)
T ss_dssp TSCTTTSSHHHHHHHHHHHTTCCTTCCEEHHHHHHHHH
T ss_pred CcccccccHHHHHHHHHHHcCCCCCCcCcHHHHHHHHH
Confidence 11 1144455554456667899999999766
No 369
>2h2k_A Protein S100-A13; calcium binding protein, metal binding protein; 2.00A {Homo sapiens} PDB: 1yur_A 1yus_A 1yut_A 1yuu_A 2egd_A 2k8m_B 2ki4_B* 2ki6_C* 2kot_A* 2l5x_B 2cxj_A
Probab=25.69 E-value=71 Score=25.64 Aligned_cols=49 Identities=8% Similarity=0.102 Sum_probs=28.1
Q ss_pred cchhccHHHHHHHhHHHhcc-CCCchhhhhhhccCCCcccchhHHhhhcc
Q 006120 517 QVRKVDAVRYIKLLRAVYIP-SHGVSEMMEVHGEADSSMVSLSEFLVMFD 565 (660)
Q Consensus 517 ~~i~~D~~~~l~dL~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 565 (660)
.|-..+...++...-..+.+ ...+.+++.---.++.-.|+|.||+.|+.
T Consensus 40 ~Is~~EL~~~l~~~lg~~~~~~~ev~~li~~~D~d~dG~Idf~EF~~~~~ 89 (106)
T 2h2k_A 40 SLSVNEFKELVTQQLPHLLKDVGSLDEKMKSLDVNQDSELKFNEYWRLIG 89 (106)
T ss_dssp EECHHHHHHHHHHHCTTTTTTCCCHHHHHHHHCTTCSSSEEHHHHHHHHH
T ss_pred EECHHHHHHHHHHHcCcCCCCHHHHHHHHHHHCCCCCCCCcHHHHHHHHH
Confidence 45555555555431111222 24566666555556667899999998764
No 370
>2bl0_C Myosin regulatory light chain; muscle protein, slime mould, EF-hand; 1.75A {Physarum polycephalum}
Probab=25.66 E-value=50 Score=27.29 Aligned_cols=97 Identities=13% Similarity=0.244 Sum_probs=49.6
Q ss_pred HHHhhhhccCCCcccccchhhhhhhcc-cCCCCHHHHHHhhhhhhcccccCCCCccchhccHHHHHHHhHHHhccCCCch
Q 006120 463 NERILSVLDETGSARVDLGMFYAILAP-ICSGSPEKRKRVAFDALLWRPVNEGSTQVRKVDAVRYIKLLRAVYIPSHGVS 541 (660)
Q Consensus 463 ~~~~l~~hDr~g~~~fev~~y~~~~~~-~~~~~~~~r~r~~~d~~~~~~~~~~~a~~i~~D~~~~l~dL~~~~~~~~~~~ 541 (660)
+..++..+|.+|+|.+..--|...+.. .........++..+..+ +.++. ..|-..+...++..+-.- .+...+.
T Consensus 44 ~~~l~~~~d~~~~g~i~~~eF~~~~~~~~~~~~~~~~~~~~F~~~---D~d~~-G~i~~~el~~~l~~~g~~-~~~~~~~ 118 (142)
T 2bl0_C 44 FNEMFNEADATGNGKIQFPEFLSMMGRRMKQTTSEDILRQAFRTF---DPEGT-GYIPKAALQDALLNLGDR-LKPHEFA 118 (142)
T ss_dssp HHHHHHHHCTTCSSEEEHHHHHHHHHHHHTTCCCHHHHHHHHHHT---CCSSC-SCEEHHHHHHHHHHSSSC-CCHHHHH
T ss_pred HHHHHHHhCcCCCCeeeHHHHHHHHHHHhcCCChHHHHHHHHHHH---CCCCC-CcCcHHHHHHHHHHcCCC-CCHHHHH
Confidence 455778888887776554444223332 11222344566655511 22221 244455555555443110 1111234
Q ss_pred hhhhhhccCCCcccchhHHhhhcc
Q 006120 542 EMMEVHGEADSSMVSLSEFLVMFD 565 (660)
Q Consensus 542 ~~~~~~~~~~~~~~~~~~~~~~~~ 565 (660)
.++..-. ++.-.|+|.||+.++.
T Consensus 119 ~~~~~~d-~~dg~i~~~eF~~~~~ 141 (142)
T 2bl0_C 119 EFLGITE-TEKGQIRYDNFINTMF 141 (142)
T ss_dssp HHHHHHC-CSSSEECSHHHHTTTC
T ss_pred HHHHHhC-CCCCcEeHHHHHHHHc
Confidence 4554444 6677899999998764
No 371
>1x62_A C-terminal LIM domain protein 1; PDZ and LIM domain protein 1, LIM domain protein CLP-36, contractIle protein, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=25.62 E-value=15 Score=27.81 Aligned_cols=50 Identities=24% Similarity=0.375 Sum_probs=32.9
Q ss_pred CcchhhhhhhhcccCccccCCC-ccccccccccccccccccccccccccccccC
Q 006120 569 WGFGIMSTLMKLEAGDRNRHGR-HVCSVCRYPIIGSRFKEMKSHFSLCSQCYSE 621 (660)
Q Consensus 569 ~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 621 (660)
++-.|... .+.+.|+.-|.. -+|.+|+-++.+..|-+.. .--.|..||.+
T Consensus 21 C~~~I~~~--~~~a~~~~~H~~CF~C~~C~~~L~~~~~~~~~-g~~yC~~cy~~ 71 (79)
T 1x62_A 21 CGTGIVGV--FVKLRDRHRHPECYVCTDCGTNLKQKGHFFVE-DQIYCEKHARE 71 (79)
T ss_dssp SCCCCCSS--CEECSSCEECTTTTSCSSSCCCHHHHCCEESS-SCEECHHHHHH
T ss_pred CCCCccCc--EEEECcceeCcCcCeeCCCCCCCCCCCeEeEC-CEEECHHHHHH
Confidence 33345443 356667777763 5788888888887777654 34568888854
No 372
>2r2i_A Guanylyl cyclase-activating protein 1; EF hand, GCAP, guanylate cyclase activating protein, GCAP1, GCAP-1, calcium, lipoprotein, myristate; HET: MYR; 2.00A {Gallus gallus}
Probab=25.51 E-value=47 Score=29.67 Aligned_cols=101 Identities=17% Similarity=0.235 Sum_probs=53.4
Q ss_pred HHHHHhhhhccCCCcccccchhhhhhhcccCCCCHHHHHHhhhhhhcccccCCCCccchhccHHHHHHHhHHHhccCCC-
Q 006120 461 AINERILSVLDETGSARVDLGMFYAILAPICSGSPEKRKRVAFDALLWRPVNEGSTQVRKVDAVRYIKLLRAVYIPSHG- 539 (660)
Q Consensus 461 ~l~~~~l~~hDr~g~~~fev~~y~~~~~~~~~~~~~~r~r~~~d~~~~~~~~~~~a~~i~~D~~~~l~dL~~~~~~~~~- 539 (660)
..+..+|..+|.+|+|....-=|...+...........++..+.. .+.++. ..|-..+...++..+..+-++...
T Consensus 52 ~~~~~~f~~~D~d~~G~I~~~Ef~~~~~~~~~~~~~~~~~~~F~~---~D~d~~-G~I~~~Ef~~~~~~~~~~~~~~~~~ 127 (198)
T 2r2i_A 52 KYVEQMFETFDFNKDGYIDFMEYVAALSLVLKGKVDQKLRWYFKL---YDVDGN-GCIDRGELLNIIKAIRAINRCNEAM 127 (198)
T ss_dssp HHHHHHHHHHCTTCSSCEEHHHHHHHHHHHSSCCHHHHHHHHHHH---HCTTCS-SCEEHHHHHHHHHHTTGGGGSSSCC
T ss_pred HHHHHHHHHHCCCCCCeEcHHHHHHHHHHHccCchHHHHHHHHHH---hcCCCC-CcCcHHHHHHHHHHHHhhcCCCchh
Confidence 346778999999988765544342233332233444566665552 122222 244455555555544322111111
Q ss_pred -----chhhhhhhccCCCcccchhHHhhhcc
Q 006120 540 -----VSEMMEVHGEADSSMVSLSEFLVMFD 565 (660)
Q Consensus 540 -----~~~~~~~~~~~~~~~~~~~~~~~~~~ 565 (660)
+..++..--.++.-.|+|.||+.++.
T Consensus 128 ~~~~~~~~~f~~~D~d~dG~I~~~Ef~~~~~ 158 (198)
T 2r2i_A 128 TAEEFTNMVFDKIDINGDGELSLEEFMEGVQ 158 (198)
T ss_dssp CHHHHHHHHHHHHCTTCSSEECHHHHHHHHT
T ss_pred hHHHHHHHHHHHhCCCCCCcCcHHHHHHHHH
Confidence 23334444445666899999999766
No 373
>2lv7_A Calcium-binding protein 7; metal binding protein; NMR {Homo sapiens}
Probab=25.38 E-value=84 Score=24.75 Aligned_cols=63 Identities=13% Similarity=0.148 Sum_probs=36.1
Q ss_pred HHHHhhhhhhcccccCCCCccchhccHHHHHHHhHHHhccCCCchhhhhhhccCCCcccchhHHhhhc
Q 006120 497 KRKRVAFDALLWRPVNEGSTQVRKVDAVRYIKLLRAVYIPSHGVSEMMEVHGEADSSMVSLSEFLVMF 564 (660)
Q Consensus 497 ~r~r~~~d~~~~~~~~~~~a~~i~~D~~~~l~dL~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 564 (660)
+.+|.+|.. .+.++. ..|-..+...++..|- .-.+...+.+++..--.++.-.|+|.||+.|.
T Consensus 36 ~el~~~F~~---~D~d~~-G~I~~~El~~~l~~lg-~~~~~~ei~~l~~~~D~d~dG~I~~~EF~~~m 98 (100)
T 2lv7_A 36 EEIREAFKV---FDRDGN-GFISKQELGTAMRSLG-YMPNEVELEVIIQRLDMDGDGQVDFEEFVTLL 98 (100)
T ss_dssp HHHHHHHHH---TCSSCS-SCBCHHHHHHHHHHHT-CCCCTTTHHHHHHHHCSSCSSSBCHHHHHHHT
T ss_pred HHHHHHHHH---HcCCCC-CcCCHHHHHHHHHHhC-CCCCHHHHHHHHHHHCCCCCCeEeHHHHHHHh
Confidence 356666662 233332 3455555555555542 22344455666665556777789999999864
No 374
>1s1e_A KV channel interacting protein 1; kchip, calcium-binding protein, EF-finger, transport protein; 2.30A {Homo sapiens} SCOP: a.39.1.5
Probab=25.27 E-value=79 Score=29.04 Aligned_cols=102 Identities=17% Similarity=0.294 Sum_probs=53.3
Q ss_pred HHHHHhhhhccCCCcccccchhhhhhhcccCCCCHHHHHHhhhhhhcccccCCCCccchhccHHHHHHHhHHHhcc----
Q 006120 461 AINERILSVLDETGSARVDLGMFYAILAPICSGSPEKRKRVAFDALLWRPVNEGSTQVRKVDAVRYIKLLRAVYIP---- 536 (660)
Q Consensus 461 ~l~~~~l~~hDr~g~~~fev~~y~~~~~~~~~~~~~~r~r~~~d~~~~~~~~~~~a~~i~~D~~~~l~dL~~~~~~---- 536 (660)
..+..+|...|.+|+|....-=|...+...........++..+. ..+.++. ..|-..+...++..+-...+.
T Consensus 89 ~~~~~~f~~~D~d~~G~I~~~Ef~~~l~~~~~~~~~~~l~~~F~---~~D~d~d-G~Is~~E~~~~l~~~~~~~g~~~~~ 164 (224)
T 1s1e_A 89 TYAHYLFNAFDTTQTGSVKFEDFVTALSILLRGTVHEKLRWTFN---LYDINKD-GYINKEEMMDIVKAIYDMMGKYTYP 164 (224)
T ss_dssp HHHHHHHHHHCTTCSSCBCHHHHHHHHHHHHHCCHHHHHHHHHH---HHCTTCC-SEECHHHHHHHHHHHHHHHTTCCCG
T ss_pred HHHHHHHHHhcCCCCCcEeHHHHHHHHHHHccCCHHHHHHHHHH---HHcCCCC-CeECHHHHHHHHHHHHHHhcccCCC
Confidence 34566888899998776554333222222212233445555554 1222222 345555555666555333331
Q ss_pred --C-----CCchhhhhhhccCCCcccchhHHhhhccC
Q 006120 537 --S-----HGVSEMMEVHGEADSSMVSLSEFLVMFDD 566 (660)
Q Consensus 537 --~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 566 (660)
+ .-+..++..--.++.-.|+|.||+.++..
T Consensus 165 ~~~~~~~~~~~~~~f~~~D~d~dG~Is~~EF~~~~~~ 201 (224)
T 1s1e_A 165 VLKEDTPRQHVDVFFQKMDKNKDGIVTLDEFLESCQE 201 (224)
T ss_dssp GGCSSSHHHHHHHHHHHHCTTCSSCEEHHHHHHHHHT
T ss_pred CCCHhHHHHHHHHHHHHhCCCCCCcEeHHHHHHHHHh
Confidence 1 11233444444456668999999997663
No 375
>2xjy_A Rhombotin-2; oncoprotein, T-cell leukemia, proto-oncogene, transcription, developmental protein; 2.40A {Homo sapiens} PDB: 2xjz_A
Probab=25.26 E-value=21 Score=29.98 Aligned_cols=39 Identities=21% Similarity=0.396 Sum_probs=27.1
Q ss_pred ccCccccCC-Ccccccccccc-cccccccccccccccccccc
Q 006120 581 EAGDRNRHG-RHVCSVCRYPI-IGSRFKEMKSHFSLCSQCYS 620 (660)
Q Consensus 581 ~~~~~~~~~-~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~ 620 (660)
++.+..=|. =-+|+.|.-++ .|.+|-+.. .-.+|..||.
T Consensus 84 ~a~~~~~H~~CF~C~~C~~~L~~g~~f~~~~-~~~~C~~c~~ 124 (131)
T 2xjy_A 84 RVKDKVYHLECFKCAACQKHFCVGDRYLLIN-SDIVCEQDIY 124 (131)
T ss_dssp EETTEEEEGGGCBCTTTCCBCCTTCEEEEET-TEEEEGGGHH
T ss_pred eeCCceECccCcccCCCCCCCCCCCEEEEEC-CEEEcHHHHH
Confidence 455666665 35788888888 688887764 4567888874
No 376
>2w2u_A Hypothetical P60 katanin; hydrolase transport complex, nucleotide-binding, ESCRT, AAA-ATPase, cytokinesis, ATP-binding; 2.20A {Sulfolobus acidocaldarius}
Probab=25.10 E-value=1.2e+02 Score=23.11 Aligned_cols=19 Identities=26% Similarity=0.319 Sum_probs=10.5
Q ss_pred HHHcCCHHHHHHHHHHHHH
Q 006120 135 LYEHQLFKEALVSFKRACE 153 (660)
Q Consensus 135 ~~~~g~~~~A~~~~~~al~ 153 (660)
.-..|++++|+.+|.++++
T Consensus 29 ~D~~g~y~eAl~lY~~aie 47 (83)
T 2w2u_A 29 ADKEGNAEEAITNYKKAIE 47 (83)
T ss_dssp HHHTTCHHHHHHHHHHHHH
T ss_pred HHHhccHHHHHHHHHHHHH
Confidence 3445666666666555544
No 377
>2cu8_A Cysteine-rich protein 2; CRP2, CRIP2, ESP1 protein, zinc-binding, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=25.10 E-value=19 Score=26.82 Aligned_cols=41 Identities=17% Similarity=0.421 Sum_probs=30.6
Q ss_pred cccCccccCC-Ccccccccccccccccccccccccccc-ccccC
Q 006120 580 LEAGDRNRHG-RHVCSVCRYPIIGSRFKEMKSHFSLCS-QCYSE 621 (660)
Q Consensus 580 ~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~ 621 (660)
+.+.++.-|. =-+|++|+-|+.+..|.+.. .--.|. .||.+
T Consensus 25 v~a~~~~~H~~CF~C~~C~~~L~~~~~~~~~-g~~yC~~~cy~~ 67 (76)
T 2cu8_A 25 VSSLGKDWHKFCLKCERCSKTLTPGGHAEHD-GKPFCHKPCYAT 67 (76)
T ss_dssp EEETTEEEETTTCBCSSSCCBCCTTSCEEET-TEEECTTTHHHH
T ss_pred EEECCeEeeCCCCCCCCCCCccCCCceEeEC-CEEecchHHHHH
Confidence 3466777786 45899999999998888754 445798 68854
No 378
>2l4z_A DNA endonuclease RBBP8, LIM domain transcription LMO4; protein-protein interaction, LIM-interaction DOM LMO4, RBBP8/CTIP, LIM-only protein; HET: DNA; NMR {Homo sapiens}
Probab=25.08 E-value=21 Score=29.77 Aligned_cols=40 Identities=28% Similarity=0.348 Sum_probs=22.6
Q ss_pred cccCccccCC-Cccccccccccc--ccccccccccccccccccc
Q 006120 580 LEAGDRNRHG-RHVCSVCRYPII--GSRFKEMKSHFSLCSQCYS 620 (660)
Q Consensus 580 ~~~~~~~~~~-~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~ 620 (660)
+.+.++.-|. =-+|+.|+-++. |.+|-+.... -.|..||.
T Consensus 77 v~a~~~~wH~~CF~C~~C~~~L~~~g~~f~~~dg~-~yC~~cy~ 119 (123)
T 2l4z_A 77 LYAMDSYWHSRCLKCSSCQAQLGDIGTSSYTKSGM-ILCRNDYI 119 (123)
T ss_dssp EEETTEEEETTTSBCTTTCCBGGGTTCCCBCSSSC-CBCHHHHH
T ss_pred EEeCCcEEcccccCcCcCCCcccccCCceEEECCE-EeCHHHhh
Confidence 4455556665 346666666664 5666554433 35666664
No 379
>2ct9_A Calcium-binding protein P22; EF-hand, metal binding protein; 2.20A {Rattus norvegicus} PDB: 2e30_A
Probab=24.90 E-value=70 Score=28.81 Aligned_cols=99 Identities=15% Similarity=0.326 Sum_probs=49.7
Q ss_pred HHhhhhccCCCcccccchhhhhhhcccCC---C-------------CHHHHHHhhhhhhcccccCCCCccchhccHHHHH
Q 006120 464 ERILSVLDETGSARVDLGMFYAILAPICS---G-------------SPEKRKRVAFDALLWRPVNEGSTQVRKVDAVRYI 527 (660)
Q Consensus 464 ~~~l~~hDr~g~~~fev~~y~~~~~~~~~---~-------------~~~~r~r~~~d~~~~~~~~~~~a~~i~~D~~~~l 527 (660)
..++...|.+|+|.+..--|...+..... . .....++..|..| +.++. ..|-..+...++
T Consensus 64 ~~l~~~~d~~~~g~i~~~EF~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~F~~~---D~d~d-G~Is~~El~~~l 139 (208)
T 2ct9_A 64 DRIINAFFSEGEDQVNFRGFMRTLAHFRPIEDNEKSKDVNGPEPLNSRSNKLHFAFRLY---DLDKD-DKISRDELLQVL 139 (208)
T ss_dssp HHHHHTTSCTTCSCEEHHHHHHHHHTTSCCC-----------CCTTSHHHHHHHHHHHH---CTTCS-SEECHHHHHHHH
T ss_pred HHHHHHHcCCCCCcCcHHHHHHHHHhhccccchhhhcccccccccccHHHHHHHHHHHH---CCCCC-CEEcHHHHHHHH
Confidence 45677788887776443333223332211 0 1344666555522 22222 234444444455
Q ss_pred HHhHHHhccCC---Cchhh----hhhhccCCCcccchhHHhhhccCCCC
Q 006120 528 KLLRAVYIPSH---GVSEM----MEVHGEADSSMVSLSEFLVMFDDPDW 569 (660)
Q Consensus 528 ~dL~~~~~~~~---~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~ 569 (660)
..+ ++..- .+..+ +..-..++.-.|+|.||+.++.....
T Consensus 140 ~~~---~g~~~s~~~~~~l~~~~~~~~D~d~dG~Is~~EF~~~~~~~~~ 185 (208)
T 2ct9_A 140 RMM---VGVNISDEQLGSIADRTIQEADQDGDSAISFTEFVKVLEKVDV 185 (208)
T ss_dssp HHH---SCTTCCHHHHHHHHHHHHHHHCSSSSSSEEHHHHHHTTTTSCG
T ss_pred HHH---hCCCCCHHHHHHHHHHHHHHhCCCCCCcCcHHHHHHHHhccCh
Confidence 443 22211 12222 44344566668999999998886443
No 380
>2aao_A CDPK, calcium-dependent protein kinase, isoform AK1; calmodulin-like domain, EF calcium binding protein, transferase; 2.00A {Arabidopsis thaliana}
Probab=24.89 E-value=31 Score=29.61 Aligned_cols=97 Identities=13% Similarity=0.151 Sum_probs=45.4
Q ss_pred HHHhhhhccCCCcccccchhhhhhhcccCCCCHHHHHHhhhhhhcccccCCCCccchhccHHHHHHHhHHHhccCCCchh
Q 006120 463 NERILSVLDETGSARVDLGMFYAILAPICSGSPEKRKRVAFDALLWRPVNEGSTQVRKVDAVRYIKLLRAVYIPSHGVSE 542 (660)
Q Consensus 463 ~~~~l~~hDr~g~~~fev~~y~~~~~~~~~~~~~~r~r~~~d~~~~~~~~~~~a~~i~~D~~~~l~dL~~~~~~~~~~~~ 542 (660)
+..++...|.+++|.+..--|...+...........++..+.. .+.++. ..|-..+...++..+- .+..-+.+
T Consensus 65 ~~~~~~~~d~~~~g~i~~~ef~~~~~~~~~~~~~~~~~~~F~~---~D~d~~-G~i~~~e~~~~l~~~~---~~~~~~~~ 137 (166)
T 2aao_A 65 ILDLMQAADVDNSGTIDYKEFIAATLHLNKIEREDHLFAAFTY---FDKDGS-GYITPDELQQACEEFG---VEDVRIEE 137 (166)
T ss_dssp HHHHHHHHCTTCCSSBCHHHHHHHHTTCHHHHTTHHHHHHHHH---HCTTCS-SSBCHHHHHHHTCC-----------CC
T ss_pred HHHHHHHhCCCCCCeEcHHHHHHHHHHHhhcccHHHHHHHHHH---hCCCCC-CcCcHHHHHHHHHHcC---CCHHHHHH
Confidence 4567778888877765543342222221110111244444441 122221 2344444444443321 12223445
Q ss_pred hhhhhccCCCcccchhHHhhhccC
Q 006120 543 MMEVHGEADSSMVSLSEFLVMFDD 566 (660)
Q Consensus 543 ~~~~~~~~~~~~~~~~~~~~~~~~ 566 (660)
++..-..++.-.|+|.||+.++..
T Consensus 138 ~~~~~d~~~dg~i~~~eF~~~~~~ 161 (166)
T 2aao_A 138 LMRDVDQDNDGRIDYNEFVAMMQK 161 (166)
T ss_dssp HHHHHCTTCSSSBCHHHHHHHHC-
T ss_pred HHHHhCCCCCCcEeHHHHHHHHHh
Confidence 565555666678999999997764
No 381
>2cpt_A SKD1 protein, vacuolar sorting protein 4B; MIT, helix bundle, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.7.14.1
Probab=24.81 E-value=91 Score=25.67 Aligned_cols=33 Identities=15% Similarity=0.135 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHhccCCCchhchHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh
Q 006120 175 YREAKEEYLLALEAAETGGNQWAYLLPQIYVNLGIALEGEGMVLSACEYYRESAIL 230 (660)
Q Consensus 175 ~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~ 230 (660)
.+.|+.++.+|++.+.. |+|++|+.+|..++++
T Consensus 15 l~kAi~lv~~Ave~D~a-----------------------g~y~eAl~lY~~Aie~ 47 (117)
T 2cpt_A 15 LQKAIDLASKAAQEDKA-----------------------GNYEEALQLYQHAVQY 47 (117)
T ss_dssp HHHHHHHHHHHHHHHHH-----------------------TCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHc-----------------------cCHHHHHHHHHHHHHH
No 382
>1x63_A Skeletal muscle LIM-protein 1; LIM domain, four and A half LIM domains protein 1, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=24.04 E-value=19 Score=27.36 Aligned_cols=41 Identities=22% Similarity=0.302 Sum_probs=28.3
Q ss_pred cccCccccCCC-ccccccccccccccccccccccccccccccC
Q 006120 580 LEAGDRNRHGR-HVCSVCRYPIIGSRFKEMKSHFSLCSQCYSE 621 (660)
Q Consensus 580 ~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 621 (660)
+.+.++.-|.. -+|++|+-|+.+..|.+... --.|..||.+
T Consensus 32 ~~a~~~~~H~~CF~C~~C~~~L~~~~~~~~~~-~~yC~~cy~~ 73 (82)
T 1x63_A 32 VEYKGTVWHKDCFTCSNCKQVIGTGSFFPKGE-DFYCVTCHET 73 (82)
T ss_dssp EECSSCEEETTTCCCSSSCCCCTTSCEEEETT-EEEEHHHHHH
T ss_pred EEECccccccccCchhhCCCccCCCccEeeCC-EEECHHHHHH
Confidence 45566677763 57888888888888877543 4568888854
No 383
>3nxa_A Protein S100-A16; S100 family, calcium binding protein, APO, EF-hand calcium binding proteins, S100 proteins, protein dynamics, binding protein; 2.10A {Homo sapiens} SCOP: a.39.1.0 PDB: 2l0u_A 2l0v_A 2l50_A 2l51_A
Probab=23.74 E-value=55 Score=25.94 Aligned_cols=26 Identities=8% Similarity=0.307 Sum_probs=18.0
Q ss_pred chhhhhhhccCCCcccchhHHhhhcc
Q 006120 540 VSEMMEVHGEADSSMVSLSEFLVMFD 565 (660)
Q Consensus 540 ~~~~~~~~~~~~~~~~~~~~~~~~~~ 565 (660)
+.+++.---.++.-.|+|.||+.|..
T Consensus 57 v~~~i~~~D~d~DG~Idf~EF~~~m~ 82 (100)
T 3nxa_A 57 ADKLIQNLDANHDGRISFDEYWTLIG 82 (100)
T ss_dssp HHHHHHHSCCCSSCCBCHHHHHHHHH
T ss_pred HHHHHHHhCCCCCCCCcHHHHHHHHH
Confidence 34455444456667899999999765
No 384
>2egq_A FHL1 protein; LIM domain, four and A half LIM domains protein 1, skeletal muscle LIM- protein 1, SLIM 1, structural genomics NPPSFA; NMR {Homo sapiens}
Probab=23.30 E-value=37 Score=25.19 Aligned_cols=20 Identities=25% Similarity=0.514 Sum_probs=16.5
Q ss_pred CccccCCCcccccccccccc
Q 006120 583 GDRNRHGRHVCSVCRYPIIG 602 (660)
Q Consensus 583 ~~~~~~~~~~~~~~~~~~~~ 602 (660)
.|-.|.-.+.|+.|.-||.|
T Consensus 8 ~cy~~~~~~~C~~C~~~I~~ 27 (77)
T 2egq_A 8 DCYKNFVAKKCAGCKNPITG 27 (77)
T ss_dssp TCCCSCCCCCCSSSCCCCCC
T ss_pred hHhchhhCccCcccCCcccC
Confidence 35566678999999999997
No 385
>1om2_A Protein (mitochondrial import receptor subunit TOM20); mitochondrial protein import across outer membrane, receptor for presequences; NMR {Rattus norvegicus} SCOP: a.23.4.1
Probab=22.99 E-value=99 Score=24.40 Aligned_cols=31 Identities=16% Similarity=0.260 Sum_probs=21.0
Q ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHhCCCc
Q 006120 204 YVNLGIALEGEGMVLSACEYYRESAILCPTH 234 (660)
Q Consensus 204 ~~~la~~~~~~g~~~~A~~~~~~al~~~p~~ 234 (660)
...+|..+...|+++.|+.+|-+|+...|+-
T Consensus 23 eV~lGE~L~~~g~~e~av~Hf~nAl~Vc~qP 53 (95)
T 1om2_A 23 EIQLGEELLAQGDYEKGVDHLTNAIAVCGQP 53 (95)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHHHHHHHHSCH
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHHcCCH
Confidence 3456666777777777777777777766553
No 386
>2dl1_A Spartin; SPG20, MIT, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=22.90 E-value=1.1e+02 Score=25.12 Aligned_cols=17 Identities=24% Similarity=0.131 Sum_probs=10.4
Q ss_pred CHHHHHHHHHHHHHHhc
Q 006120 174 RYREAKEEYLLALEAAE 190 (660)
Q Consensus 174 ~~~~A~~~~~~al~~~p 190 (660)
.+++|..+..++|+++.
T Consensus 18 ~h~~AF~~Is~AL~~DE 34 (116)
T 2dl1_A 18 AYKKAFLFVNKGLNTDE 34 (116)
T ss_dssp HHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhhhhh
Confidence 45666666666666553
No 387
>2wvi_A Mitotic checkpoint serine/threonine-protein kinase BUB1 beta; tumor suppressor, TPR, apoptosis, cell division, cell cycle, kinetochore, transferase; 1.80A {Homo sapiens} PDB: 3si5_A
Probab=22.80 E-value=3.8e+02 Score=23.36 Aligned_cols=69 Identities=10% Similarity=0.058 Sum_probs=53.5
Q ss_pred hccCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhcc
Q 006120 117 GARSREEAFDGHMAIGRVLYEHQLFKEALVSFKRACEL--QPTDVRPHFRAGNCLYVLGRYREAKEEYLLALEAAET 191 (660)
Q Consensus 117 ~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~--~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~ 191 (660)
...+++.....|...+... + .+..+|..+... ....+..|...|..+...|++.+|.+.|+.+++....
T Consensus 58 ~YknD~RyLklWl~ya~~~---~---~p~~if~~L~~~~IG~~~AlfY~~wA~~lE~~~~~~~A~~Iy~~Gi~~~A~ 128 (164)
T 2wvi_A 58 RYYSDPRFLNLWLKLGRLC---N---EPLDMYSYLHNQGIGVSLAQFYISWAEEYEARENFRKADAIFQEGIQQKAE 128 (164)
T ss_dssp GGTTCHHHHHHHHHHHHHC---S---CHHHHHHHHHHTTSSTTBHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCB
T ss_pred hhccCHHHHHHHHHHHHhc---C---CHHHHHHHHHHCCcchhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCC
Confidence 3446777778888777653 3 366677777664 4567888889999999999999999999999997654
No 388
>3esl_A Checkpoint serine/threonine-protein kinase BUB1; mitotic spindle checkpoint, TPR motif, all-alpha domain, MAD3-like domain; HET: NHE; 1.74A {Saccharomyces cerevisiae}
Probab=22.72 E-value=4.3e+02 Score=23.93 Aligned_cols=73 Identities=15% Similarity=-0.060 Sum_probs=58.5
Q ss_pred ccCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC--CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhcc
Q 006120 118 ARSREEAFDGHMAIGRVLYEHQLFKEALVSFKRACELQ--PTDVRPHFRAGNCLYVLGRYREAKEEYLLALEAAET 191 (660)
Q Consensus 118 ~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~--p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~ 191 (660)
..+++.....|...+..+ ..++..++...|.-+.... ...+..|...|..+...|++.+|.+.|+.+++..-.
T Consensus 73 YkND~RYLklWl~Ya~~~-~~~~~~~p~~if~~L~~~~IG~~~AlfYe~wA~~lE~~g~~~~A~~Vy~~GI~~~A~ 147 (202)
T 3esl_A 73 YRNDPRFLKIWIWYINLF-LSNNFHESENTFKYMFNKGIGTKLSLFYEEFSKLLENAQFFLEAKVLLELGAENNCR 147 (202)
T ss_dssp GTTCHHHHHHHHHHHHHH-STTCHHHHHHHHHHHHHHTSSTTBHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCB
T ss_pred ccCCHHHHHHHHHHHHhh-cccccCCHHHHHHHHHHCCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCc
Confidence 346777778888887766 3444778889988887754 557888889999999999999999999999997654
No 389
>1x3h_A Leupaxin; paxillin family, protein-protein interaction, LIM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=22.50 E-value=40 Score=25.26 Aligned_cols=27 Identities=30% Similarity=0.363 Sum_probs=11.7
Q ss_pred ccCccccCCC-ccccccccccccccccc
Q 006120 581 EAGDRNRHGR-HVCSVCRYPIIGSRFKE 607 (660)
Q Consensus 581 ~~~~~~~~~~-~~~~~~~~~~~~~~~~~ 607 (660)
.+.++.-|.. -+|++|+-|+.+..|-+
T Consensus 31 ~a~~~~~H~~CF~C~~C~~~L~~~~~~~ 58 (80)
T 1x3h_A 31 SAMDTVWHPECFVCGDCFTSFSTGSFFE 58 (80)
T ss_dssp EETTEEECTTTCBCSSSCCBSCSSCCEE
T ss_pred EECCCeEecCcCChhhCCCCCCCCcEEe
Confidence 3344444432 34444555544444443
No 390
>2v6y_A AAA family ATPase, P60 katanin; MIT, VPS4, archaea, AAA-ATPase, ATP-binding, microtubule INT and trafficking domain, nucleotide-binding; HET: SRT; 2.40A {Sulfolobus solfataricus} PDB: 2v6y_B*
Probab=22.22 E-value=1.5e+02 Score=22.57 Aligned_cols=18 Identities=22% Similarity=0.351 Sum_probs=9.4
Q ss_pred HHcCCHHHHHHHHHHHHH
Q 006120 136 YEHQLFKEALVSFKRACE 153 (660)
Q Consensus 136 ~~~g~~~~A~~~~~~al~ 153 (660)
-..|++++|+.+|..+++
T Consensus 22 D~~g~y~eAl~lY~~aie 39 (83)
T 2v6y_A 22 DKEGKVEDAITYYKKAIE 39 (83)
T ss_dssp HHTTCHHHHHHHHHHHHH
T ss_pred HHhccHHHHHHHHHHHHH
Confidence 344555555555555443
No 391
>1e7l_A GP49, recombination endonuclease VII; resolvase, holliday junction, DNAse; HET: SO4; 1.32A {Bacteriophage T4} SCOP: a.140.4.1 d.4.1.5 PDB: 2qnc_A* 1en7_A 1e7d_A 2qnf_A*
Probab=22.22 E-value=29 Score=30.19 Aligned_cols=36 Identities=22% Similarity=0.472 Sum_probs=23.7
Q ss_pred Cccccccccccccccccccccccc-------------ccccccc-CCCCC
Q 006120 590 RHVCSVCRYPIIGSRFKEMKSHFS-------------LCSQCYS-EGKVP 625 (660)
Q Consensus 590 ~~~~~~~~~~~~~~~~~~~~~~~~-------------~~~~~~~-~~~~~ 625 (660)
+..|+.|+-|+.|+..+-+--|.- ||+.|-. +|+|.
T Consensus 20 ~g~C~IC~~~l~~~~~~~~vDHdH~~~g~~tG~VRGlLC~~CN~~lG~~~ 69 (157)
T 1e7l_A 20 NGKCLICQRELNPDVQANHLDHDHELNGPKAGKVRGLLCNLCDAAEGQMK 69 (157)
T ss_dssp TTBCTTTCCBCCSSGGGSEEEECCCCSSTTTTBEEEEECHHHHHHHHHHH
T ss_pred CCcCcccCCccccccccccccCCCCCCCCCCCcchhhccHhHhchhcccc
Confidence 457999999988875444444443 7888854 45543
No 392
>2rpa_A Katanin P60 ATPase-containing subunit A1; AAA ATPase, ATP-binding, cell cycle, cell division, cytoplas hydrolase, microtubule; NMR {Mus musculus}
Probab=22.11 E-value=75 Score=24.06 Aligned_cols=27 Identities=11% Similarity=0.192 Sum_probs=19.6
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHh
Q 006120 128 HMAIGRVLYEHQLFKEALVSFKRACEL 154 (660)
Q Consensus 128 ~~~lg~~~~~~g~~~~A~~~~~~al~~ 154 (660)
...+|+-+...|+|+.|+.+|+.+++.
T Consensus 15 ~~k~ARe~Al~GnYdta~~yY~g~~~q 41 (78)
T 2rpa_A 15 NVKLAREYALLGNYDSAMVYYQGVLDQ 41 (78)
T ss_dssp HHHHHHHHHHHTCCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhcChHHHHHHHHHHHHH
Confidence 456777777778888888888777653
No 393
>3k21_A PFCDPK3, calcium-dependent protein kinase 3; calcium kinase structural genomics malaria, structural genom consortium, SGC, ATP-binding; 1.15A {Plasmodium falciparum} PDB: 3o4y_A
Probab=21.55 E-value=86 Score=27.81 Aligned_cols=96 Identities=17% Similarity=0.219 Sum_probs=48.6
Q ss_pred HHHhhhhccCCCcccccchhhhhhhcccCCCCHHHHHHhhhhhhcccccCCCCccchhccHHHHHHHhHHHhccC--C--
Q 006120 463 NERILSVLDETGSARVDLGMFYAILAPICSGSPEKRKRVAFDALLWRPVNEGSTQVRKVDAVRYIKLLRAVYIPS--H-- 538 (660)
Q Consensus 463 ~~~~l~~hDr~g~~~fev~~y~~~~~~~~~~~~~~r~r~~~d~~~~~~~~~~~a~~i~~D~~~~l~dL~~~~~~~--~-- 538 (660)
+..++...|.+|+|.+..--|...+..... .....++..|..+ +.++. ..|-..+...++.... .+.. .
T Consensus 89 ~~~l~~~~D~d~~g~i~~~EF~~~~~~~~~-~~~~~l~~~F~~~---D~d~~-G~Is~~El~~~l~~~~--~~~~l~~~~ 161 (191)
T 3k21_A 89 FDLLLDQIDSDGSGKIDYTEFIAAALDRKQ-LSKKLIYCAFRVF---DVDND-GEITTAELAHILYNGN--KKGNITQRD 161 (191)
T ss_dssp HHHHHHHHCTTCSSSEEHHHHHHHHSCGGG-CCHHHHHHHHHHH---STTCS-SCBCHHHHHHHHHHSS--SCSCCCHHH
T ss_pred HHHHHHHhCCCCCCeEeHHHHHHHHHhhhh-ccHHHHHHHHHHh---CCCCC-CcCCHHHHHHHHHhcC--CCCCCCHhH
Confidence 345778889887777655444223322211 2234566555521 22221 2344444444443210 0000 0
Q ss_pred --CchhhhhhhccCCCcccchhHHhhhcc
Q 006120 539 --GVSEMMEVHGEADSSMVSLSEFLVMFD 565 (660)
Q Consensus 539 --~~~~~~~~~~~~~~~~~~~~~~~~~~~ 565 (660)
-+.+++..-..++.-.|+|.||+.+++
T Consensus 162 ~~~~~~~~~~~D~d~dG~Is~~EF~~~~~ 190 (191)
T 3k21_A 162 VNRVKRMIRDVDKNNDGKIDFHEFSEMMK 190 (191)
T ss_dssp HHHHHHHHHHHCSSSSSSBCHHHHHHHHC
T ss_pred HHHHHHHHHHhcCCCCCeECHHHHHHHHc
Confidence 133455555556777899999999865
No 394
>2ijq_A Hypothetical protein; structural genomics, PSI, protein structure initiative, NEW YORK SGX research center for structural genomics; 1.88A {Haloarcula marismortui} SCOP: a.246.2.1
Probab=21.47 E-value=4e+02 Score=23.13 Aligned_cols=63 Identities=11% Similarity=0.078 Sum_probs=44.2
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC------HHHHHH---HHHHHHHcCCHHHHHHHHHHHHHHhc
Q 006120 128 HMAIGRVLYEHQLFKEALVSFKRACELQPTD------VRPHFR---AGNCLYVLGRYREAKEEYLLALEAAE 190 (660)
Q Consensus 128 ~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~------~~~~~~---la~~~~~~g~~~~A~~~~~~al~~~p 190 (660)
-+..|..++..|+|-+|-+.++.+-...+.. ...+.+ .|....+.|+..-|...+.+++..-.
T Consensus 35 ~~~~~i~lFn~g~yfeaHEvLEe~W~~~~~~~~er~~lqGLIQ~lAvAl~H~~rgN~~GA~~ll~~Al~~L~ 106 (161)
T 2ijq_A 35 AVVHGVRLYNSGEFHESHDCFEDEWYNYGRGNTESKFLHGMVQVAAGAYKHFDFEDDDGMRSLFRTSLQYFR 106 (161)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHTTTTCSSSHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHhCCCchHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHH
Confidence 3566777888888888888888887766543 122233 34445668899999999999887543
No 395
>3pwf_A Rubrerythrin; non heme iron peroxidases, oxidative stress, oxidoreductase; 1.64A {Pyrococcus furiosus} PDB: 3mps_A 3pza_A 3qvd_A 1nnq_A 2hr5_A
Probab=21.06 E-value=28 Score=31.03 Aligned_cols=24 Identities=25% Similarity=0.735 Sum_probs=16.1
Q ss_pred Ccccccccccccccccccccccccccccccc
Q 006120 590 RHVCSVCRYPIIGSRFKEMKSHFSLCSQCYS 620 (660)
Q Consensus 590 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 620 (660)
...|.+|+|..+| + -...|+.|-.
T Consensus 138 ~~~C~~CG~i~~~----~---~p~~CP~Cg~ 161 (170)
T 3pwf_A 138 VYICPICGYTAVD----E---APEYCPVCGA 161 (170)
T ss_dssp EEECTTTCCEEES----C---CCSBCTTTCC
T ss_pred eeEeCCCCCeeCC----C---CCCCCCCCCC
Confidence 5678888887774 1 2237888853
No 396
>2f33_A Calbindin; EF-hand, Ca2+-binding, metal binding protein; NMR {Rattus norvegicus} PDB: 2g9b_A
Probab=20.88 E-value=4.1e+02 Score=24.21 Aligned_cols=102 Identities=7% Similarity=0.072 Sum_probs=50.4
Q ss_pred HHHHHhhhhccCCCcccccchhhhhhhccc---------CCCCHHHHHHhhhhhhcccccCCCCccchhccHHHHHHHhH
Q 006120 461 AINERILSVLDETGSARVDLGMFYAILAPI---------CSGSPEKRKRVAFDALLWRPVNEGSTQVRKVDAVRYIKLLR 531 (660)
Q Consensus 461 ~l~~~~l~~hDr~g~~~fev~~y~~~~~~~---------~~~~~~~r~r~~~d~~~~~~~~~~~a~~i~~D~~~~l~dL~ 531 (660)
..+..++...|.+|+|.+..--|...+... ........++..|.. .+.++. ..|-..+...++..+.
T Consensus 58 ~~~~~l~~~~D~~~~g~i~~~Ef~~~~~~~~~~~~~~~~~~~~~~~~l~~~F~~---~D~d~~-G~i~~~el~~~l~~~~ 133 (263)
T 2f33_A 58 PEMKTFVDQYGQRDDGKIGIVELAHVLPTEENFLLLFRCQQLKSCEEFMKTWRK---YDTDHS-GFIETEELKNFLKDLL 133 (263)
T ss_dssp HHHHHHHHHHTTGGGCCBCHHHHHHHTTSCTTHHHHHGGGTSSCHHHHHHHHTT---SSTTTC-SSBCHHHHHHHHHHHH
T ss_pred HHHHHHHHHhCCCCCCcCcHHHHHHHHhhhhhHHHHHHHhhccHHHHHHHHHHH---HCCCCC-CCcCHHHHHHHHHHHH
Confidence 455678888898877765544442222211 111223345555541 122221 3444445445554442
Q ss_pred HHhccCCCc---hh----hhhhhccCCCcccchhHHhhhccC
Q 006120 532 AVYIPSHGV---SE----MMEVHGEADSSMVSLSEFLVMFDD 566 (660)
Q Consensus 532 ~~~~~~~~~---~~----~~~~~~~~~~~~~~~~~~~~~~~~ 566 (660)
...+..... .+ ++..-..++.-.|+|.||+.++..
T Consensus 134 ~~~g~~~~~~~~~~~~~~~~~~~d~~~dg~i~~~ef~~~~~~ 175 (263)
T 2f33_A 134 EKANKTVDDTKLAEYTDLMLKLFDSNNDGKLELTEMARLLPV 175 (263)
T ss_dssp HHHTSCCCHHHHHHHHHHHHHHTCSSSSSCBCHHHHHHHSCT
T ss_pred hhcCCCCCHHHHHHHHHHHHHhcCCCCCCeEcHHHHHHHHHH
Confidence 211222111 11 444444566668999999998764
No 397
>1om2_A Protein (mitochondrial import receptor subunit TOM20); mitochondrial protein import across outer membrane, receptor for presequences; NMR {Rattus norvegicus} SCOP: a.23.4.1
Probab=20.64 E-value=1.8e+02 Score=22.87 Aligned_cols=30 Identities=10% Similarity=0.213 Sum_probs=23.3
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHhCCC
Q 006120 128 HMAIGRVLYEHQLFKEALVSFKRACELQPT 157 (660)
Q Consensus 128 ~~~lg~~~~~~g~~~~A~~~~~~al~~~p~ 157 (660)
...+|..+...|+++.|+.+|-+|+...|.
T Consensus 23 eV~lGE~L~~~g~~e~av~Hf~nAl~Vc~q 52 (95)
T 1om2_A 23 EIQLGEELLAQGDYEKGVDHLTNAIAVCGQ 52 (95)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHHHHHHHHSC
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHHcCC
Confidence 355788888888888888888888877665
No 398
>3tvj_I Protease inhibitor SGPI-2; in vitro evolution, specific inhibitor, allostery, hydrolase; 1.28A {Schistocerca gregaria} PDB: 4djz_H 1kgm_A 1gl1_I 1pmc_A
Probab=20.60 E-value=25 Score=22.49 Aligned_cols=18 Identities=44% Similarity=0.960 Sum_probs=13.0
Q ss_pred ccccccccccccccccccc--cCCCC
Q 006120 601 IGSRFKEMKSHFSLCSQCY--SEGKV 624 (660)
Q Consensus 601 ~~~~~~~~~~~~~~~~~~~--~~~~~ 624 (660)
-|++||. -||+|. ++|+.
T Consensus 9 Pg~tFk~------~CNtC~C~~dG~~ 28 (38)
T 3tvj_I 9 PGTTFKD------KCNTCRCGSDGKS 28 (38)
T ss_dssp TTCEEEE------TTEEEEECTTSSC
T ss_pred CCCeeec------cCceeECCCCCce
Confidence 5899985 688875 45763
No 399
>2jtn_A LIM domain-binding protein 1, LIM/homeobox protein LHX3; intramolecular (fusion) protein-protein complex, protein binding/transcription complex; NMR {Mus musculus}
Probab=20.45 E-value=18 Score=32.55 Aligned_cols=41 Identities=27% Similarity=0.446 Sum_probs=27.0
Q ss_pred ccCccccCC-Cccccccccccc-cccccccccccccccccccC
Q 006120 581 EAGDRNRHG-RHVCSVCRYPII-GSRFKEMKSHFSLCSQCYSE 621 (660)
Q Consensus 581 ~~~~~~~~~-~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~ 621 (660)
.+.++.-|- =-+|..|+-++. |.+|-.++..--+|..||..
T Consensus 137 ~a~~~~~H~~CF~C~~C~~~L~~g~~f~~~~~g~~yC~~cy~~ 179 (182)
T 2jtn_A 137 RAQDFVYHLHCFACVVCKRQLATGDEFYLMEDSRLVCKADYET 179 (182)
T ss_dssp EETTEECCTTTCCCTTTCCCCCTTCEEEECTTSCEECHHHHHH
T ss_pred ecCCCCEEeCCCcCCCCCCCCCCCCceEEccCCEEECHHHHHH
Confidence 345556665 347888888876 77776555555668888753
No 400
>3h4s_E KCBP interacting Ca2+-binding protein; kinesin, motor protein, regulation, complex, calcium, EF- hand, calmodulin, ATP-binding, microtubule; HET: ADP; 2.40A {Arabidopsis thaliana}
Probab=20.44 E-value=26 Score=29.40 Aligned_cols=25 Identities=16% Similarity=0.219 Sum_probs=17.7
Q ss_pred hhhhhhhccCCCcccchhHHhhhcc
Q 006120 541 SEMMEVHGEADSSMVSLSEFLVMFD 565 (660)
Q Consensus 541 ~~~~~~~~~~~~~~~~~~~~~~~~~ 565 (660)
..++..-..++.-.|+|.||+.++.
T Consensus 80 ~~~~~~~D~d~dG~I~~~EF~~~~~ 104 (135)
T 3h4s_E 80 QGMVREGDLDGDGALNQTEFCVLMV 104 (135)
T ss_dssp HHHHHHHCSSCSSSBCHHHHHHHHH
T ss_pred HHHHHHhCCCCCCCCcHHHHHHHHH
Confidence 3445444456667899999999775
No 401
>2npm_A 14-3-3 domain containing protein; cell regulator protein 14-3-3, struc genomics, structural genomics consortium, SGC, protein BIND; HET: SEP; 2.52A {Cryptosporidium parvum}
Probab=20.25 E-value=2.7e+02 Score=26.40 Aligned_cols=53 Identities=13% Similarity=-0.028 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHhccCCCchhchHHHHHHHHHHHHHH-CCCHHHHHHHHHHHHH
Q 006120 176 REAKEEYLLALEAAETGGNQWAYLLPQIYVNLGIALEG-EGMVLSACEYYRESAI 229 (660)
Q Consensus 176 ~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~la~~~~~-~g~~~~A~~~~~~al~ 229 (660)
+.|...|++|.++. ..-...++.......+.+..|.. +++.++|....++++.
T Consensus 173 e~a~~aY~~A~~iA-~~L~pthPirLGLaLNfSVFyYEiln~~~~Ac~lAk~Afd 226 (260)
T 2npm_A 173 EDALKAYKDATVVA-KDLEPTHPIRLGLALNFSVFHYEILNEPRAAIDMAKEAFE 226 (260)
T ss_dssp HHHHHHHHHHHHHH-TTSCTTCHHHHHHHHHHHHHHHHTSCCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHH-HhCCCCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
No 402
>1x6a_A LIMK-2, LIM domain kinase 2; LIM-kinase 2, zinc finger domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=20.20 E-value=56 Score=24.49 Aligned_cols=37 Identities=16% Similarity=0.296 Sum_probs=23.5
Q ss_pred CccccCCCcccccccccccccccccccccc-ccccccc
Q 006120 583 GDRNRHGRHVCSVCRYPIIGSRFKEMKSHF-SLCSQCY 619 (660)
Q Consensus 583 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~ 619 (660)
.|-.|.-++.|+.|.-||.|....-+...| .-|-+|.
T Consensus 8 ~~y~~~~~~~C~~C~~~I~~~~~~a~~~~~H~~CF~C~ 45 (81)
T 1x6a_A 8 KDYWGKFGEFCHGCSLLMTGPFMVAGEFKYHPECFACM 45 (81)
T ss_dssp CCSSCCSSCBCTTTCCBCCSCCBCCTTCCBCTTSCBCT
T ss_pred hHHhhhcCCcCccCCCCcCceEEEECCceeccccCCcc
Confidence 355666778999999999976544443333 2344444
No 403
>2mys_C Myosin; muscle protein, motor protein; HET: MLY; 2.80A {Gallus gallus} SCOP: a.39.1.5 PDB: 1m8q_C* 1mvw_C* 1o18_F* 1o19_C* 1o1a_C* 1o1b_C* 1o1c_C* 1o1d_C* 1o1e_C* 1o1f_C* 1o1g_C*
Probab=20.18 E-value=1.1e+02 Score=25.08 Aligned_cols=47 Identities=15% Similarity=0.197 Sum_probs=27.5
Q ss_pred cchhccHHHHHHHhHHHhccCCCchhhhhhhccCCCcccchhHHhhhcc
Q 006120 517 QVRKVDAVRYIKLLRAVYIPSHGVSEMMEVHGEADSSMVSLSEFLVMFD 565 (660)
Q Consensus 517 ~~i~~D~~~~l~dL~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 565 (660)
.|-..+...++..+-. -.+...+..++.. ..++.-.|+|.||+.++.
T Consensus 101 ~i~~~el~~~l~~~g~-~~~~~~~~~~~~~-d~~~dg~i~~~eF~~~~~ 147 (149)
T 2mys_C 101 TVMGAELRHVLATLGE-KMTEEEVEELMKG-QEDSNGCINYEAFVKHIM 147 (149)
T ss_pred eEcHHHHHHHHHHhCC-CCCHHHHHHHHhh-CCCCCCcEeHHHHHHHHh
Confidence 3444455555544311 1222234557777 667777899999998764
No 404
>1iml_A CRIP, cysteine rich intestinal protein; metal-binding protein, LIM domain protein; NMR {Rattus rattus} SCOP: g.39.1.3 g.39.1.3
Probab=20.12 E-value=27 Score=25.94 Aligned_cols=41 Identities=20% Similarity=0.439 Sum_probs=30.6
Q ss_pred cccCccccCC-Ccccccccccccccccccccccccccc-ccccC
Q 006120 580 LEAGDRNRHG-RHVCSVCRYPIIGSRFKEMKSHFSLCS-QCYSE 621 (660)
Q Consensus 580 ~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~ 621 (660)
+.+.++.-|. =-+|++|+-|+.+..|-+.. .--.|. .||.+
T Consensus 16 v~a~~~~~H~~CF~C~~C~~~L~~~~~~~~~-g~~yC~~~cy~~ 58 (76)
T 1iml_A 16 VTSLGKDWHRPCLKCEKCGKTLTSGGHAEHE-GKPYCNHPCYSA 58 (76)
T ss_dssp EEETTEEEETTTCBCTTTCCBCCTTTEEEET-TEEEETTTHHHH
T ss_pred EEECCccccCCCCCccccCccCCCCceECcC-CeEeeCHHHHHH
Confidence 4556777776 45899999999998888754 445798 68864
No 405
>2rpa_A Katanin P60 ATPase-containing subunit A1; AAA ATPase, ATP-binding, cell cycle, cell division, cytoplas hydrolase, microtubule; NMR {Mus musculus}
Probab=20.07 E-value=1e+02 Score=23.35 Aligned_cols=28 Identities=21% Similarity=0.274 Sum_probs=24.4
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHh
Q 006120 162 HFRAGNCLYVLGRYREAKEEYLLALEAA 189 (660)
Q Consensus 162 ~~~la~~~~~~g~~~~A~~~~~~al~~~ 189 (660)
...+|+=+...|+|+.|+.+|+.+++.-
T Consensus 15 ~~k~ARe~Al~GnYdta~~yY~g~~~qI 42 (78)
T 2rpa_A 15 NVKLAREYALLGNYDSAMVYYQGVLDQM 42 (78)
T ss_dssp HHHHHHHHHHHTCCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhcChHHHHHHHHHHHHHH
Confidence 4567889999999999999999998764
Done!