BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 006121
(660 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|2P2Q|A Chain A, Acetyl-Coa Synthetase, R584e Mutation
pdb|2P2Q|B Chain B, Acetyl-Coa Synthetase, R584e Mutation
Length = 652
Score = 133 bits (334), Expect = 4e-31, Method: Compositional matrix adjust.
Identities = 129/475 (27%), Positives = 196/475 (41%), Gaps = 41/475 (8%)
Query: 167 WLPGSVLNIAECCLLPSNHRRKEDNTVAIVWREDRCDESAVNLMTYKELREQVMLVANAL 226
W LN+A CL H ++ + AI+W D D S ++Y+EL V AN L
Sbjct: 69 WYEDGTLNLAANCL--DRHLQENGDRTAIIWEGD--DTSQSKHISYRELHRDVCRFANTL 124
Query: 227 -DTMFSKGDAIAIDMPMTVRAVIIYLAIILAGYVVVSIADSFAAREIATRLRVSKAKGIF 285
D KGD +AI MPM A + LA G V I F+ +A R+ S ++ +
Sbjct: 125 LDLGIKKGDVVAIYMPMVPEAAVAMLACARIGAVHSVIFGGFSPEAVAGRIIDSSSRLVI 184
Query: 286 TQDFILRGGRKFPLYSKVLGA-------APLKAIVLPAIGNDVGIPLREQDLSWKDFLSS 338
T D +R GR PL V A + IVL G+D+ +DL W+D +
Sbjct: 185 TADEGVRAGRSIPLKKNVDDALKNPNVTSVEHVIVLKRTGSDIDW-QEGRDLWWRDLIEK 243
Query: 339 VDYHPRPNYYSPVYNPVDAVVNILFSSGTTGEPKAIPWTQLSSIRCTAEGWAHI-DLKVG 397
P + N D + IL++SG+TG+PK + T + A + ++ D G
Sbjct: 244 AS----PEHQPEAMNAEDPLF-ILYTSGSTGKPKGVLHTTGGYLVYAATTFKYVFDYHPG 298
Query: 398 DVYCWPTNLGWVMG-PVILFSSFLNGATLALYQGS---PLERSFGKFVQDAGVTVLGTVP 453
D+Y ++GWV G +L+ GAT +++G P + V V +L T P
Sbjct: 299 DIYWCTADVGWVTGHSYLLYGPLACGATTLMFEGVPNWPTPARMCQVVDKHQVNILYTAP 358
Query: 454 SLVKAW--RNTNCLEGLDWTKIRSFASTGETSNVDDDLWLSSKAWYNAIIESCGGTELSS 511
+ ++A +EG D + +R S GE N + W W E C +
Sbjct: 359 TAIRALMAEGDKAIEGTDRSSLRILGSVGEPINPEAWEWY----WKKIGKEKCPVVDTWW 414
Query: 512 AYIQGSLLQPQAFGAFSTATMTAGL-------VILDECGVPYPDDQPCVGEVGLFPLYLG 564
G + GA +A ++D G +P + G + + + G
Sbjct: 415 QTETGGFMITPLPGAIELKAGSATRPFFGVQPALVDNEG--HPQEGATEGNLVITDSWPG 472
Query: 565 ASDRLLNADHEEVYFRGMPMYKGMCLRRHGDIIKRTVGGYIIVQGRADDTMNLGG 619
+ R L DHE +K M GD +R GY + GR DD +N+ G
Sbjct: 473 QA-RTLFGDHERFEQTYFSTFKNMYFS--GDGARRDEDGYYWITGRVDDVLNVSG 524
>pdb|2P2B|A Chain A, Acetyl-coa Synthetase, V386a Mutation
pdb|2P2B|B Chain B, Acetyl-coa Synthetase, V386a Mutation
Length = 652
Score = 133 bits (334), Expect = 4e-31, Method: Compositional matrix adjust.
Identities = 129/475 (27%), Positives = 196/475 (41%), Gaps = 41/475 (8%)
Query: 167 WLPGSVLNIAECCLLPSNHRRKEDNTVAIVWREDRCDESAVNLMTYKELREQVMLVANAL 226
W LN+A CL H ++ + AI+W D D S ++Y+EL V AN L
Sbjct: 69 WYEDGTLNLAANCL--DRHLQENGDRTAIIWEGD--DTSQSKHISYRELHRDVCRFANTL 124
Query: 227 -DTMFSKGDAIAIDMPMTVRAVIIYLAIILAGYVVVSIADSFAAREIATRLRVSKAKGIF 285
D KGD +AI MPM A + LA G V I F+ +A R+ S ++ +
Sbjct: 125 LDLGIKKGDVVAIYMPMVPEAAVAMLACARIGAVHSVIFGGFSPEAVAGRIIDSSSRLVI 184
Query: 286 TQDFILRGGRKFPLYSKVLGA-------APLKAIVLPAIGNDVGIPLREQDLSWKDFLSS 338
T D +R GR PL V A + IVL G+D+ +DL W+D +
Sbjct: 185 TADEGVRAGRSIPLKKNVDDALKNPNVTSVEHVIVLKRTGSDIDW-QEGRDLWWRDLIEK 243
Query: 339 VDYHPRPNYYSPVYNPVDAVVNILFSSGTTGEPKAIPWTQLSSIRCTAEGWAHI-DLKVG 397
P + N D + IL++SG+TG+PK + T + A + ++ D G
Sbjct: 244 AS----PEHQPEAMNAEDPLF-ILYTSGSTGKPKGVLHTTGGYLVYAATTFKYVFDYHPG 298
Query: 398 DVYCWPTNLGWVMG-PVILFSSFLNGATLALYQGS---PLERSFGKFVQDAGVTVLGTVP 453
D+Y ++GWV G +L+ GAT +++G P + V V +L T P
Sbjct: 299 DIYWCTADVGWVTGHSYLLYGPLACGATTLMFEGVPNWPTPARMCQVVDKHQVNILYTAP 358
Query: 454 SLVKAW--RNTNCLEGLDWTKIRSFASTGETSNVDDDLWLSSKAWYNAIIESCGGTELSS 511
+ ++A +EG D + +R S GE N + W W E C +
Sbjct: 359 TAIRALMAEGDKAIEGTDRSSLRILGSAGEPINPEAWEWY----WKKIGKEKCPVVDTWW 414
Query: 512 AYIQGSLLQPQAFGAFSTATMTAGL-------VILDECGVPYPDDQPCVGEVGLFPLYLG 564
G + GA +A ++D G +P + G + + + G
Sbjct: 415 QTETGGFMITPLPGAIELKAGSATRPFFGVQPALVDNEG--HPQEGATEGNLVITDSWPG 472
Query: 565 ASDRLLNADHEEVYFRGMPMYKGMCLRRHGDIIKRTVGGYIIVQGRADDTMNLGG 619
+ R L DHE +K M GD +R GY + GR DD +N+ G
Sbjct: 473 QA-RTLFGDHERFEQTYFSTFKNMYFS--GDGARRDEDGYYWITGRVDDVLNVSG 524
>pdb|2P2J|A Chain A, Acetyl-Coa Synthetase, K609a Mutation
pdb|2P2J|B Chain B, Acetyl-Coa Synthetase, K609a Mutation
Length = 652
Score = 133 bits (334), Expect = 4e-31, Method: Compositional matrix adjust.
Identities = 129/475 (27%), Positives = 196/475 (41%), Gaps = 41/475 (8%)
Query: 167 WLPGSVLNIAECCLLPSNHRRKEDNTVAIVWREDRCDESAVNLMTYKELREQVMLVANAL 226
W LN+A CL H ++ + AI+W D D S ++Y+EL V AN L
Sbjct: 69 WYEDGTLNLAANCL--DRHLQENGDRTAIIWEGD--DTSQSKHISYRELHRDVCRFANTL 124
Query: 227 -DTMFSKGDAIAIDMPMTVRAVIIYLAIILAGYVVVSIADSFAAREIATRLRVSKAKGIF 285
D KGD +AI MPM A + LA G V I F+ +A R+ S ++ +
Sbjct: 125 LDLGIKKGDVVAIYMPMVPEAAVAMLACARIGAVHSVIFGGFSPEAVAGRIIDSSSRLVI 184
Query: 286 TQDFILRGGRKFPLYSKVLGA-------APLKAIVLPAIGNDVGIPLREQDLSWKDFLSS 338
T D +R GR PL V A + IVL G+D+ +DL W+D +
Sbjct: 185 TADEGVRAGRSIPLKKNVDDALKNPNVTSVEHVIVLKRTGSDIDW-QEGRDLWWRDLIEK 243
Query: 339 VDYHPRPNYYSPVYNPVDAVVNILFSSGTTGEPKAIPWTQLSSIRCTAEGWAHI-DLKVG 397
P + N D + IL++SG+TG+PK + T + A + ++ D G
Sbjct: 244 AS----PEHQPEAMNAEDPLF-ILYTSGSTGKPKGVLHTTGGYLVYAATTFKYVFDYHPG 298
Query: 398 DVYCWPTNLGWVMG-PVILFSSFLNGATLALYQGS---PLERSFGKFVQDAGVTVLGTVP 453
D+Y ++GWV G +L+ GAT +++G P + V V +L T P
Sbjct: 299 DIYWCTADVGWVTGHSYLLYGPLACGATTLMFEGVPNWPTPARMCQVVDKHQVNILYTAP 358
Query: 454 SLVKAW--RNTNCLEGLDWTKIRSFASTGETSNVDDDLWLSSKAWYNAIIESCGGTELSS 511
+ ++A +EG D + +R S GE N + W W E C +
Sbjct: 359 TAIRALMAEGDKAIEGTDRSSLRILGSVGEPINPEAWEWY----WKKIGKEKCPVVDTWW 414
Query: 512 AYIQGSLLQPQAFGAFSTATMTAGL-------VILDECGVPYPDDQPCVGEVGLFPLYLG 564
G + GA +A ++D G +P + G + + + G
Sbjct: 415 QTETGGFMITPLPGAIELKAGSATRPFFGVQPALVDNEG--HPQEGATEGNLVITDSWPG 472
Query: 565 ASDRLLNADHEEVYFRGMPMYKGMCLRRHGDIIKRTVGGYIIVQGRADDTMNLGG 619
+ R L DHE +K M GD +R GY + GR DD +N+ G
Sbjct: 473 QA-RTLFGDHERFEQTYFSTFKNMYFS--GDGARRDEDGYYWITGRVDDVLNVSG 524
>pdb|2P2F|A Chain A, Acetyl-coa Synthetase, Wild-type With Acetate, Amp, And
Coa Bound
pdb|2P2F|B Chain B, Acetyl-coa Synthetase, Wild-type With Acetate, Amp, And
Coa Bound
Length = 652
Score = 132 bits (333), Expect = 4e-31, Method: Compositional matrix adjust.
Identities = 129/475 (27%), Positives = 196/475 (41%), Gaps = 41/475 (8%)
Query: 167 WLPGSVLNIAECCLLPSNHRRKEDNTVAIVWREDRCDESAVNLMTYKELREQVMLVANAL 226
W LN+A CL H ++ + AI+W D D S ++Y+EL V AN L
Sbjct: 69 WYEDGTLNLAANCL--DRHLQENGDRTAIIWEGD--DTSQSKHISYRELHRDVCRFANTL 124
Query: 227 -DTMFSKGDAIAIDMPMTVRAVIIYLAIILAGYVVVSIADSFAAREIATRLRVSKAKGIF 285
D KGD +AI MPM A + LA G V I F+ +A R+ S ++ +
Sbjct: 125 LDLGIKKGDVVAIYMPMVPEAAVAMLACARIGAVHSVIFGGFSPEAVAGRIIDSSSRLVI 184
Query: 286 TQDFILRGGRKFPLYSKVLGA-------APLKAIVLPAIGNDVGIPLREQDLSWKDFLSS 338
T D +R GR PL V A + IVL G+D+ +DL W+D +
Sbjct: 185 TADEGVRAGRSIPLKKNVDDALKNPNVTSVEHVIVLKRTGSDIDW-QEGRDLWWRDLIEK 243
Query: 339 VDYHPRPNYYSPVYNPVDAVVNILFSSGTTGEPKAIPWTQLSSIRCTAEGWAHI-DLKVG 397
P + N D + IL++SG+TG+PK + T + A + ++ D G
Sbjct: 244 AS----PEHQPEAMNAEDPLF-ILYTSGSTGKPKGVLHTTGGYLVYAATTFKYVFDYHPG 298
Query: 398 DVYCWPTNLGWVMG-PVILFSSFLNGATLALYQGS---PLERSFGKFVQDAGVTVLGTVP 453
D+Y ++GWV G +L+ GAT +++G P + V V +L T P
Sbjct: 299 DIYWCTADVGWVTGHSYLLYGPLACGATTLMFEGVPNWPTPARMCQVVDKHQVNILYTAP 358
Query: 454 SLVKAW--RNTNCLEGLDWTKIRSFASTGETSNVDDDLWLSSKAWYNAIIESCGGTELSS 511
+ ++A +EG D + +R S GE N + W W E C +
Sbjct: 359 TAIRALMAEGDKAIEGTDRSSLRILGSVGEPINPEAWEWY----WKKIGKEKCPVVDTWW 414
Query: 512 AYIQGSLLQPQAFGAFSTATMTAGL-------VILDECGVPYPDDQPCVGEVGLFPLYLG 564
G + GA +A ++D G +P + G + + + G
Sbjct: 415 QTETGGFMITPLPGAIELKAGSATRPFFGVQPALVDNEG--HPQEGATEGNLVITDSWPG 472
Query: 565 ASDRLLNADHEEVYFRGMPMYKGMCLRRHGDIIKRTVGGYIIVQGRADDTMNLGG 619
+ R L DHE +K M GD +R GY + GR DD +N+ G
Sbjct: 473 QA-RTLFGDHERFEQTYFSTFKNMYFS--GDGARRDEDGYYWITGRVDDVLNVSG 524
>pdb|2P20|A Chain A, Acetyl-Coa Synthetase, R584a Mutation
pdb|2P20|B Chain B, Acetyl-Coa Synthetase, R584a Mutation
Length = 652
Score = 132 bits (333), Expect = 4e-31, Method: Compositional matrix adjust.
Identities = 129/475 (27%), Positives = 196/475 (41%), Gaps = 41/475 (8%)
Query: 167 WLPGSVLNIAECCLLPSNHRRKEDNTVAIVWREDRCDESAVNLMTYKELREQVMLVANAL 226
W LN+A CL H ++ + AI+W D D S ++Y+EL V AN L
Sbjct: 69 WYEDGTLNLAANCL--DRHLQENGDRTAIIWEGD--DTSQSKHISYRELHRDVCRFANTL 124
Query: 227 -DTMFSKGDAIAIDMPMTVRAVIIYLAIILAGYVVVSIADSFAAREIATRLRVSKAKGIF 285
D KGD +AI MPM A + LA G V I F+ +A R+ S ++ +
Sbjct: 125 LDLGIKKGDVVAIYMPMVPEAAVAMLACARIGAVHSVIFGGFSPEAVAGRIIDSSSRLVI 184
Query: 286 TQDFILRGGRKFPLYSKVLGA-------APLKAIVLPAIGNDVGIPLREQDLSWKDFLSS 338
T D +R GR PL V A + IVL G+D+ +DL W+D +
Sbjct: 185 TADEGVRAGRSIPLKKNVDDALKNPNVTSVEHVIVLKRTGSDIDW-QEGRDLWWRDLIEK 243
Query: 339 VDYHPRPNYYSPVYNPVDAVVNILFSSGTTGEPKAIPWTQLSSIRCTAEGWAHI-DLKVG 397
P + N D + IL++SG+TG+PK + T + A + ++ D G
Sbjct: 244 AS----PEHQPEAMNAEDPLF-ILYTSGSTGKPKGVLHTTGGYLVYAATTFKYVFDYHPG 298
Query: 398 DVYCWPTNLGWVMG-PVILFSSFLNGATLALYQGS---PLERSFGKFVQDAGVTVLGTVP 453
D+Y ++GWV G +L+ GAT +++G P + V V +L T P
Sbjct: 299 DIYWCTADVGWVTGHSYLLYGPLACGATTLMFEGVPNWPTPARMCQVVDKHQVNILYTAP 358
Query: 454 SLVKAW--RNTNCLEGLDWTKIRSFASTGETSNVDDDLWLSSKAWYNAIIESCGGTELSS 511
+ ++A +EG D + +R S GE N + W W E C +
Sbjct: 359 TAIRALMAEGDKAIEGTDRSSLRILGSVGEPINPEAWEWY----WKKIGKEKCPVVDTWW 414
Query: 512 AYIQGSLLQPQAFGAFSTATMTAGL-------VILDECGVPYPDDQPCVGEVGLFPLYLG 564
G + GA +A ++D G +P + G + + + G
Sbjct: 415 QTETGGFMITPLPGAIELKAGSATRPFFGVQPALVDNEG--HPQEGATEGNLVITDSWPG 472
Query: 565 ASDRLLNADHEEVYFRGMPMYKGMCLRRHGDIIKRTVGGYIIVQGRADDTMNLGG 619
+ R L DHE +K M GD +R GY + GR DD +N+ G
Sbjct: 473 QA-RTLFGDHERFEQTYFSTFKNMYFS--GDGARRDEDGYYWITGRVDDVLNVSG 524
>pdb|2P2M|A Chain A, Acetyl-Coa Synthetase, R194a Mutation
pdb|2P2M|B Chain B, Acetyl-Coa Synthetase, R194a Mutation
Length = 652
Score = 130 bits (326), Expect = 3e-30, Method: Compositional matrix adjust.
Identities = 128/475 (26%), Positives = 195/475 (41%), Gaps = 41/475 (8%)
Query: 167 WLPGSVLNIAECCLLPSNHRRKEDNTVAIVWREDRCDESAVNLMTYKELREQVMLVANAL 226
W LN+A CL H ++ + AI+W D D S ++Y+EL V AN L
Sbjct: 69 WYEDGTLNLAANCL--DRHLQENGDRTAIIWEGD--DTSQSKHISYRELHRDVCRFANTL 124
Query: 227 -DTMFSKGDAIAIDMPMTVRAVIIYLAIILAGYVVVSIADSFAAREIATRLRVSKAKGIF 285
D KGD +AI MPM A + LA G V I F+ +A R+ S ++ +
Sbjct: 125 LDLGIKKGDVVAIYMPMVPEAAVAMLACARIGAVHSVIFGGFSPEAVAGRIIDSSSRLVI 184
Query: 286 TQDFILRGGRKFPLYSKVLGA-------APLKAIVLPAIGNDVGIPLREQDLSWKDFLSS 338
T D +R G PL V A + IVL G+D+ +DL W+D +
Sbjct: 185 TADEGVRAGASIPLKKNVDDALKNPNVTSVEHVIVLKRTGSDIDW-QEGRDLWWRDLIEK 243
Query: 339 VDYHPRPNYYSPVYNPVDAVVNILFSSGTTGEPKAIPWTQLSSIRCTAEGWAHI-DLKVG 397
P + N D + IL++SG+TG+PK + T + A + ++ D G
Sbjct: 244 AS----PEHQPEAMNAEDPLF-ILYTSGSTGKPKGVLHTTGGYLVYAATTFKYVFDYHPG 298
Query: 398 DVYCWPTNLGWVMG-PVILFSSFLNGATLALYQGS---PLERSFGKFVQDAGVTVLGTVP 453
D+Y ++GWV G +L+ GAT +++G P + V V +L T P
Sbjct: 299 DIYWCTADVGWVTGHSYLLYGPLACGATTLMFEGVPNWPTPARMCQVVDKHQVNILYTAP 358
Query: 454 SLVKAW--RNTNCLEGLDWTKIRSFASTGETSNVDDDLWLSSKAWYNAIIESCGGTELSS 511
+ ++A +EG D + +R S GE N + W W E C +
Sbjct: 359 TAIRALMAEGDKAIEGTDRSSLRILGSVGEPINPEAWEWY----WKKIGKEKCPVVDTWW 414
Query: 512 AYIQGSLLQPQAFGAFSTATMTAGL-------VILDECGVPYPDDQPCVGEVGLFPLYLG 564
G + GA +A ++D G +P + G + + + G
Sbjct: 415 QTETGGFMITPLPGAIELKAGSATRPFFGVQPALVDNEG--HPQEGATEGNLVITDSWPG 472
Query: 565 ASDRLLNADHEEVYFRGMPMYKGMCLRRHGDIIKRTVGGYIIVQGRADDTMNLGG 619
+ R L DHE +K M GD +R GY + GR DD +N+ G
Sbjct: 473 QA-RTLFGDHERFEQTYFSTFKNMYFS--GDGARRDEDGYYWITGRVDDVLNVSG 524
>pdb|1PG3|A Chain A, Acetyl Coa Synthetase, Acetylated On Lys609
pdb|1PG3|B Chain B, Acetyl Coa Synthetase, Acetylated On Lys609
pdb|1PG4|A Chain A, Acetyl Coa Synthetase, Salmonella Enterica
pdb|1PG4|B Chain B, Acetyl Coa Synthetase, Salmonella Enterica
Length = 652
Score = 129 bits (324), Expect = 5e-30, Method: Compositional matrix adjust.
Identities = 128/475 (26%), Positives = 195/475 (41%), Gaps = 41/475 (8%)
Query: 167 WLPGSVLNIAECCLLPSNHRRKEDNTVAIVWREDRCDESAVNLMTYKELREQVMLVANAL 226
W LN+A CL H ++ + AI+W D D S ++Y+EL V AN L
Sbjct: 69 WYEDGTLNLAANCL--DRHLQENGDRTAIIWEGD--DTSQSKHISYRELHRDVCRFANTL 124
Query: 227 -DTMFSKGDAIAIDMPMTVRAVIIYLAIILAGYVVVSIADSFAAREIATRLRVSKAKGIF 285
D KGD +AI MPM A + LA G V I F+ +A + S ++ +
Sbjct: 125 LDLGIKKGDVVAIYMPMVPEAAVAMLACARIGAVHSVIFGGFSPEAVAGCIIDSSSRLVI 184
Query: 286 TQDFILRGGRKFPLYSKVLGA-------APLKAIVLPAIGNDVGIPLREQDLSWKDFLSS 338
T D +R GR PL V A + IVL G+D+ +DL W+D +
Sbjct: 185 TADEGVRAGRSIPLKKNVDDALKNPNVTSVEHVIVLKRTGSDIDW-QEGRDLWWRDLIEK 243
Query: 339 VDYHPRPNYYSPVYNPVDAVVNILFSSGTTGEPKAIPWTQLSSIRCTAEGWAHI-DLKVG 397
P + N D + IL++SG+TG+PK + T + A + ++ D G
Sbjct: 244 AS----PEHQPEAMNAEDPLF-ILYTSGSTGKPKGVLHTTGGYLVYAATTFKYVFDYHPG 298
Query: 398 DVYCWPTNLGWVMG-PVILFSSFLNGATLALYQGS---PLERSFGKFVQDAGVTVLGTVP 453
D+Y ++GWV G +L+ GAT +++G P + V V +L T P
Sbjct: 299 DIYWCTADVGWVTGHSYLLYGPLACGATTLMFEGVPNWPTPARMCQVVDKHQVNILYTAP 358
Query: 454 SLVKAW--RNTNCLEGLDWTKIRSFASTGETSNVDDDLWLSSKAWYNAIIESCGGTELSS 511
+ ++A +EG D + +R S GE N + W W E C +
Sbjct: 359 TAIRALMAEGDKAIEGTDRSSLRILGSVGEPINPEAWEWY----WKKIGKEKCPVVDTWW 414
Query: 512 AYIQGSLLQPQAFGAFSTATMTAGL-------VILDECGVPYPDDQPCVGEVGLFPLYLG 564
G + GA +A ++D G +P + G + + + G
Sbjct: 415 QTETGGFMITPLPGAIELKAGSATRPFFGVQPALVDNEG--HPQEGATEGNLVITDSWPG 472
Query: 565 ASDRLLNADHEEVYFRGMPMYKGMCLRRHGDIIKRTVGGYIIVQGRADDTMNLGG 619
+ R L DHE +K M GD +R GY + GR DD +N+ G
Sbjct: 473 QA-RTLFGDHERFEQTYFSTFKNMYFS--GDGARRDEDGYYWITGRVDDVLNVSG 524
>pdb|1RY2|A Chain A, Crystal Structure Of Yeast Acetyl-Coenzyme A Synthetase In
Complex With Amp
Length = 663
Score = 85.5 bits (210), Expect = 9e-17, Method: Compositional matrix adjust.
Identities = 111/485 (22%), Positives = 195/485 (40%), Gaps = 46/485 (9%)
Query: 161 SKHGGTWLPGSVLNIAECCLLPSNHRRKEDNTVAIVWREDRCDESAVNLMTYKELREQVM 220
S W LN C+ H K N AI++ D + +TYKEL E+V
Sbjct: 69 SFQNNAWFLNGQLNACYNCV--DRHALKTPNKKAIIFEGDEPGQGYS--ITYKELLEEVC 124
Query: 221 LVANALDTMFS--KGDAIAIDMPMTVRAVIIYLAIILAGYVVVSIADSFAAREIATRLRV 278
VA L KGD +A+ MPM A+I LAI G + + F++ + R+
Sbjct: 125 QVAQVLTYSMGVRKGDTVAVYMPMVPEAIITLLAISRIGAIHSVVFAGFSSNSLRDRIND 184
Query: 279 SKAKGIFTQDFILRGGRKFP---LYSKVLGAAP-LKAIVLPAIGNDVGIPLRE-QDLSWK 333
+K + T D RGG+ + L P ++ +++ N+ + +DL W
Sbjct: 185 GDSKVVITTDESNRGGKVIETKRIVDDALRETPGVRHVLVYRKTNNPSVAFHAPRDLDW- 243
Query: 334 DFLSSVDYHPRPNYYSPVYNPVDAV--VNILFSSGTTGEPKAIPWTQ-------LSSIRC 384
+ + YY PVD+ + +L++SG+TG PK + + L ++R
Sbjct: 244 ----ATEKKKYKTYYP--CTPVDSEDPLFLLYTSGSTGAPKGVQHSTAGYLLGALLTMRY 297
Query: 385 TAEGWAHIDLKVGDVYCWPTNLGWVMGPV-ILFSSFLNGATLALYQGSPLERSFGKF--- 440
T D DV+ ++GW+ G +++ L G +++G+P ++ ++
Sbjct: 298 T------FDTHQEDVFFTAGDIGWITGHTYVVYGPLLYGCATLVFEGTPAYPNYSRYWDI 351
Query: 441 VQDAGVTVLGTVPSLVKAWRNT--NCLEGLDWTKIRSFASTGETSNVDDDLWLSSKAWYN 498
+ + VT P+ ++ + + +E +R S GE + W S K N
Sbjct: 352 IDEHKVTQFYVAPTALRLLKRAGDSYIENHSLKSLRCLGSVGEPIAAEVWEWYSEKIGKN 411
Query: 499 A--IIESCGGTELSSAYIQ--GSLLQPQAFGAFSTATMTAGLVILDECGVPYPDDQPCVG 554
I+++ TE S + + P G+ S V+LD + G
Sbjct: 412 EIPIVDTYWQTESGSHLVTPLAGGVTPMKPGSASFPFFGIDAVVLDPNTGEELNTSHAEG 471
Query: 555 EVGLFPLYLGASDRLLNADHEEVYFRGMPMYKGMCLRRHGDIIKRTVGGYIIVQGRADDT 614
+ + + + R + +H+ + Y G GD + GYI + GR DD
Sbjct: 472 VLAVKAAWPSFA-RTIWKNHDRYLDTYLNPYPGYYFT--GDGAAKDKDGYIWILGRVDDV 528
Query: 615 MNLGG 619
+N+ G
Sbjct: 529 VNVSG 533
>pdb|3T5B|A Chain A, Crystal Structure Of N-Terminal Domain Of Facl13 From
Mycobacterium Tuberculosis
pdb|3T5C|A Chain A, Crystal Structure Of N-Terminal Domain Of Facl13 From
Mycobacterium Tuberculosis In Different Space Group C2
pdb|3T5C|B Chain B, Crystal Structure Of N-Terminal Domain Of Facl13 From
Mycobacterium Tuberculosis In Different Space Group C2
Length = 396
Score = 55.1 bits (131), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 85/347 (24%), Positives = 132/347 (38%), Gaps = 46/347 (13%)
Query: 210 MTYKELREQVMLVANALDTM-FSKGDAIAIDMPMTVRAVIIYLAIILAGYVVVSIADSFA 268
MTY ++ A+ L + +KGD +A+ MP +V ++ G V V I A
Sbjct: 30 MTYAQMNALANRCADVLTALGIAKGDRVALLMPNSVEFCCLFYGAAKLGAVAVPINTRLA 89
Query: 269 AREIATRLRVSKAKGIFTQDFILRGGRKFPLYSKVLGAAPLKAIVLPAIGNDVGIPLREQ 328
A E++ L S +K ++ G P+ + A V IG D L E+
Sbjct: 90 APEVSFILSDSGSK------VVIYGAPSAPVIDAIRAQADPPGTVTDWIGAD---SLAER 140
Query: 329 DLSWKDFLSSVDYHPRPNYYSPVYNPVDAVVNILFSSGTTGEPKAIPWTQLSSIRCTAEG 388
S +V+ N + I+++SGTTG PK + T S+ A
Sbjct: 141 LRSAAADEPAVECGGDDNLF------------IMYTSGTTGHPKGVVHTH-ESVHSAASS 187
Query: 389 WAH-IDLKVGDVYCWPTNLGWVMGPVILFSSFLNGATLALYQGSPLERSFGKFVQDAGVT 447
WA ID++ D P + V + S + G TL + + V++ V
Sbjct: 188 WASTIDVRYRDRLLLPLPMFHVAALTTVIFSAMRGVTLISMPQFDATKVWSLIVEER-VC 246
Query: 448 VLGTVPSLVKAWRNTNCLEGLDWTKIRSFASTGETSNVDDDLWLSSKAWYN-------AI 500
+ G VP+++ R LD R F + G + + A N A+
Sbjct: 247 IGGAVPAILNFMRQVPEFAELDAPDFRYFITGGAPM---PEALIKIYAAKNIEVVQGYAL 303
Query: 501 IESCGGTELSSAYIQGSLLQPQAF---GAFSTATMTAGLVILDECGV 544
ESCGG L LL A G+ ATM + + + GV
Sbjct: 304 TESCGGGTL--------LLSEDALRKAGSAGRATMFTDVAVRGDDGV 342
>pdb|3R44|A Chain A, Mycobacterium Tuberculosis Fatty Acyl Coa Synthetase
Length = 517
Score = 54.7 bits (130), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 85/347 (24%), Positives = 132/347 (38%), Gaps = 46/347 (13%)
Query: 210 MTYKELREQVMLVANALDTM-FSKGDAIAIDMPMTVRAVIIYLAIILAGYVVVSIADSFA 268
MTY ++ A+ L + +KGD +A+ MP +V ++ G V V I A
Sbjct: 44 MTYAQMNALANRCADVLTALGIAKGDRVALLMPNSVEFCCLFYGAAKLGAVAVPINTRLA 103
Query: 269 AREIATRLRVSKAKGIFTQDFILRGGRKFPLYSKVLGAAPLKAIVLPAIGNDVGIPLREQ 328
A E++ L S +K ++ G P+ + A V IG D L E+
Sbjct: 104 APEVSFILSDSGSK------VVIYGAPSAPVIDAIRAQADPPGTVTDWIGAD---SLAER 154
Query: 329 DLSWKDFLSSVDYHPRPNYYSPVYNPVDAVVNILFSSGTTGEPKAIPWTQLSSIRCTAEG 388
S +V+ N + I+++SGTTG PK + T S+ A
Sbjct: 155 LRSAAADEPAVECGGDDNLF------------IMYTSGTTGHPKGVVHTH-ESVHSAASS 201
Query: 389 WAH-IDLKVGDVYCWPTNLGWVMGPVILFSSFLNGATLALYQGSPLERSFGKFVQDAGVT 447
WA ID++ D P + V + S + G TL + + V++ V
Sbjct: 202 WASTIDVRYRDRLLLPLPMFHVAALTTVIFSAMRGVTLISMPQFDATKVWSLIVEER-VC 260
Query: 448 VLGTVPSLVKAWRNTNCLEGLDWTKIRSFASTGETSNVDDDLWLSSKAWYN-------AI 500
+ G VP+++ R LD R F + G + + A N A+
Sbjct: 261 IGGAVPAILNFMRQVPEFAELDAPDFRYFITGGAPM---PEALIKIYAAKNIEVVQGYAL 317
Query: 501 IESCGGTELSSAYIQGSLLQPQAF---GAFSTATMTAGLVILDECGV 544
ESCGG L LL A G+ ATM + + + GV
Sbjct: 318 TESCGGGTL--------LLSEDALRKAGSAGRATMFTDVAVRGDDGV 356
>pdb|3RG2|A Chain A, Structure Of A Two-Domain Nrps Fusion Protein Containing
The Ente Adenylation Domain And Entb Aryl-Carrier
Protein From Enterobactin Biosynthesis
pdb|3RG2|B Chain B, Structure Of A Two-Domain Nrps Fusion Protein Containing
The Ente Adenylation Domain And Entb Aryl-Carrier
Protein From Enterobactin Biosynthesis
pdb|3RG2|C Chain C, Structure Of A Two-Domain Nrps Fusion Protein Containing
The Ente Adenylation Domain And Entb Aryl-Carrier
Protein From Enterobactin Biosynthesis
pdb|3RG2|D Chain D, Structure Of A Two-Domain Nrps Fusion Protein Containing
The Ente Adenylation Domain And Entb Aryl-Carrier
Protein From Enterobactin Biosynthesis
pdb|3RG2|E Chain E, Structure Of A Two-Domain Nrps Fusion Protein Containing
The Ente Adenylation Domain And Entb Aryl-Carrier
Protein From Enterobactin Biosynthesis
pdb|3RG2|F Chain F, Structure Of A Two-Domain Nrps Fusion Protein Containing
The Ente Adenylation Domain And Entb Aryl-Carrier
Protein From Enterobactin Biosynthesis
pdb|3RG2|G Chain G, Structure Of A Two-Domain Nrps Fusion Protein Containing
The Ente Adenylation Domain And Entb Aryl-Carrier
Protein From Enterobactin Biosynthesis
pdb|3RG2|H Chain H, Structure Of A Two-Domain Nrps Fusion Protein Containing
The Ente Adenylation Domain And Entb Aryl-Carrier
Protein From Enterobactin Biosynthesis
pdb|3RG2|I Chain I, Structure Of A Two-Domain Nrps Fusion Protein Containing
The Ente Adenylation Domain And Entb Aryl-Carrier
Protein From Enterobactin Biosynthesis
pdb|3RG2|J Chain J, Structure Of A Two-Domain Nrps Fusion Protein Containing
The Ente Adenylation Domain And Entb Aryl-Carrier
Protein From Enterobactin Biosynthesis
Length = 617
Score = 49.7 bits (117), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 80/309 (25%), Positives = 105/309 (33%), Gaps = 65/309 (21%)
Query: 342 HPRPNYYSPVYNPVDAVVNILFSSGTTGEPKAIPWTQLS---SIRCTAEGWAHIDLKVGD 398
HP ++ + +P D V S GTTG PK IP T S+R + E +
Sbjct: 171 HPAEDF-TATPSPADEVAYFQLSGGTTGTPKLIPRTHNDYYYSVRRSVE-ICQFTQQTRY 228
Query: 399 VYCWPTNLGWVMGPVILFSSFLNGATLALYQGSPLERSFGKFVQDAGVTVLGTVPSLVKA 458
+ P + M FL G T+ L F ++ V V VP V
Sbjct: 229 LCAIPAAHNYAMSSPGSLGVFLAGGTVVLAADPSATLCF-PLIEKHQVNVTALVPPAVSL 287
Query: 459 WRNTNCLEGLDWTKIRSFASTGETSNVDDDLWLSSKAWYNAIIESCGGTELSSAYIQ--- 515
W +EG ++ S + GG LS+
Sbjct: 288 WLQA-LIEGESRAQLASLK-----------------------LLQVGGARLSATLAARIP 323
Query: 516 ---GSLLQPQAFGAFSTATMTAGLV-----------ILDECGVPY-PDDQPCVGEVGLFP 560
G LQ Q FG M GLV I+ G P PDD+ V + P
Sbjct: 324 AEIGCQLQ-QVFG------MAEGLVNYTRLDDSAEKIIHTQGYPMCPDDEVWVADAEGNP 376
Query: 561 LYLGASDRLLNADHEEVYFRGM---PMYKGMCLRRHG-----DIIKRTVGGYIIVQGRAD 612
L G RL+ FRG P + +G D+I GYI VQGR
Sbjct: 377 LPQGEVGRLMT--RGPYTFRGYYKSPQHNASAFDANGFYCSGDLISIDPEGYITVQGREK 434
Query: 613 DTMNLGGIK 621
D +N GG K
Sbjct: 435 DQINRGGEK 443
>pdb|3A9U|A Chain A, Crystal Structures And Enzymatic Mechanisms Of A Populus
Tomentosa 4- Coumarate--Coa Ligase
pdb|3A9V|A Chain A, Crystal Structures And Enzymatic Mechanisms Of A Populus
Tomentosa 4- Coumarate--Coa Ligase
pdb|3NI2|A Chain A, Crystal Structures And Enzymatic Mechanisms Of A Populus
Tomentosa 4- Coumarate:coa Ligase
Length = 536
Score = 43.9 bits (102), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 76/366 (20%), Positives = 140/366 (38%), Gaps = 45/366 (12%)
Query: 208 NLMTYKELREQVMLVANALDTM-FSKGDAIAIDMPMTVRAVIIYLAIILAGYVVVSIADS 266
++ TY ++ VA+ L+ + +GD I + +P + V+ +L G ++ +
Sbjct: 48 DVYTYADVELTARRVASGLNKIGIQQGDVIMLFLPSSPEFVLAFLGASHRGAIITAANPF 107
Query: 267 FAAREIATRLRVSKAKGIFTQDFILRGGRKFPLYSKV----LGAAPLKAIVLPAIGNDVG 322
E+A + S+AK + TQ + F S V + +AP D
Sbjct: 108 STPAELAKHAKASRAKLLITQACYYEKVKDFARESDVKVMCVDSAP-----------DGC 156
Query: 323 IPLREQDLSWKDFLSSVDYHPRPNYYSPVYNPVDAVVNILFSSGTTGEPKAIPWTQLSSI 382
+ E + ++ VD P D VV + +SSGTTG PK + T I
Sbjct: 157 LHFSELTQADENEAPQVDISP------------DDVVALPYSSGTTGLPKGVMLTHKGLI 204
Query: 383 RCTAEGWAHIDLKVGDVYCWPTNLGWVMGPVILFSSFLNGATLALYQGSPLE-------R 435
A+ +D ++Y ++ + P+ + + L G+P+
Sbjct: 205 TSVAQ---QVDGDNPNLYFHSEDVILCVLPMFHIYALNSIMLCGLRVGAPILIMPKFEIG 261
Query: 436 SFGKFVQDAGVTVLGTVPSLVKAWRNTNCLEGLDWTKIRSFASTGETSNVDDDLWLSSKA 495
S ++ V++ VP ++ + + L+ D + +R S G + + + +K
Sbjct: 262 SLLGLIEKYKVSIAPVVPPVMMSIAKSPDLDKHDLSSLRMIKSGGAPLGKELEDTVRAKF 321
Query: 496 WYNAIIESCGGTELSSAYIQGSLLQPQAF----GAFSTATMTAGLVILD-ECGVPYPDDQ 550
+ + G TE + F GA T A + I+D E G P +Q
Sbjct: 322 PQARLGQGYGMTEAGPVLAMCLAFAKEPFDIKPGACGTVVRNAEMKIVDPETGASLPRNQ 381
Query: 551 PCVGEV 556
P GE+
Sbjct: 382 P--GEI 385
>pdb|2VSQ|A Chain A, Structure Of Surfactin A Synthetase C (Srfa-C), A
Nonribosomal Peptide Synthetase Termination Module
Length = 1304
Score = 43.1 bits (100), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 95/420 (22%), Positives = 156/420 (37%), Gaps = 51/420 (12%)
Query: 210 MTYKELREQVMLVANALDTMFS-KGDAIAIDMPMTVRAVIIYLAIILAGYVVVSIADSFA 268
++Y+EL E+ +A L + KG +A+ ++ VI L ++ AG + +
Sbjct: 490 LSYRELDEEANRIARRLQKHGAGKGSVVALYTKRSLELVIGILGVLKAGAAYLPVDPKLP 549
Query: 269 AREIATRLRVSKAKGIFTQDFILRGGRKFPLYSKVLGAAPLKAIVLPAIGNDVGIPLREQ 328
I+ L S A + T + + P L D EQ
Sbjct: 550 EDRISYMLADSAAACLLTHQEMKEQAAELPYTGTTLFI-------------DDQTRFEEQ 596
Query: 329 DLSWKDFLSSVDYHPRPNYYSPVYNPVDAVVNILFSSGTTGEPKAIPWTQLSSIRCTAEG 388
D +++D PN P Y I+++SGTTG+PK T ++I+ +
Sbjct: 597 ---ASDPATAID----PN--DPAY--------IMYTSGTTGKPKGNITTH-ANIQGLVKH 638
Query: 389 WAHIDLKVGDVYCWPTNLGWVMGPVILFSSFLNGATLALYQGSPL---ERSFGKFVQDAG 445
++ D + +N + ++S LN A L + L ER +Q+
Sbjct: 639 VDYMAFSDQDTFLSVSNYAFDAFTFDFYASMLNAARLIIADEHTLLDTERLTDLILQE-N 697
Query: 446 VTVLGTVPSLVKAWRNTNCLEGLDWTK-IRSFASTGETSNVDDDLWLSSKAWYNAIIESC 504
V V+ +L + G DW K +R GE ++V +I
Sbjct: 698 VNVMFATTALFNLLTDA----GEDWMKGLRCILFGGERASVPHVRKALRIMGPGKLINCY 753
Query: 505 G---GTELSSAYIQGSLLQPQAFGAFSTATMTAGLVILDECGVPYPDDQPCVGEVGLFPL 561
G GT ++A++ L + A + IL+E P G VG +
Sbjct: 754 GPTEGTVFATAHVVHDLPDSISSLPIGKPISNASVYILNEQSQLQP-----FGAVGELCI 808
Query: 562 Y-LGASDRLLN-ADHEEVYFRGMPMYKGMCLRRHGDIIKRTVGGYIIVQGRADDTMNLGG 619
+G S +N AD + F P G L R GD+ + G I GR DD + + G
Sbjct: 809 SGMGVSKGYVNRADLTKEKFIENPFKPGETLYRTGDLARWLPDGTIEYAGRIDDQVKIRG 868
>pdb|3O82|A Chain A, Structure Of Base N-Terminal Domain From Acinetobacter
Baumannii Bound To
5'-O-[n-(2,3-Dihydroxybenzoyl)sulfamoyl] Adenosine
pdb|3O82|B Chain B, Structure Of Base N-Terminal Domain From Acinetobacter
Baumannii Bound To
5'-O-[n-(2,3-Dihydroxybenzoyl)sulfamoyl] Adenosine
pdb|3O83|A Chain A, Structure Of Base N-Terminal Domain From Acinetobacter
Baumannii Bound To
2-(4-N-Dodecyl-1,2,
3-Triazol-1-Yl)-5'-O-[n-(2-Hydroxybenzoyl)
Sulfamoyl]adenosine
pdb|3O83|B Chain B, Structure Of Base N-Terminal Domain From Acinetobacter
Baumannii Bound To
2-(4-N-Dodecyl-1,2,
3-Triazol-1-Yl)-5'-O-[n-(2-Hydroxybenzoyl)
Sulfamoyl]adenosine
pdb|3O84|A Chain A, Structure Of Base N-Terminal Domain From Acinetobacter
Baumannii Bound To
6-Phenyl-1-(Pyridin-4-Ylmethyl)-1h-Pyrazolo[3,
4-B]pyridine-4- Carboxylic Acid.
pdb|3O84|B Chain B, Structure Of Base N-Terminal Domain From Acinetobacter
Baumannii Bound To
6-Phenyl-1-(Pyridin-4-Ylmethyl)-1h-Pyrazolo[3,
4-B]pyridine-4- Carboxylic Acid.
pdb|3U16|A Chain A, Structure Of Base N-Terminal Domain From Acinetobacter
Baumannii Bound To
6-(P-Benzyloxy)phenyl-1-(Pyridin-4-Ylmethyl)-1h-
Pyrazolo[3,4- B]pyridine-4-Carboxylic Acid.
pdb|3U16|B Chain B, Structure Of Base N-Terminal Domain From Acinetobacter
Baumannii Bound To
6-(P-Benzyloxy)phenyl-1-(Pyridin-4-Ylmethyl)-1h-
Pyrazolo[3,4- B]pyridine-4-Carboxylic Acid.
pdb|3U17|A Chain A, Structure Of Base N-Terminal Domain From Acinetobacter
Baumannii Bound To
6-(P-Benzoyl)phenyl-1-(Pyridin-4-Ylmethyl)-1h-
Pyrazolo[3,4- B]pyridine-4-Carboxylic Acid
pdb|3U17|B Chain B, Structure Of Base N-Terminal Domain From Acinetobacter
Baumannii Bound To
6-(P-Benzoyl)phenyl-1-(Pyridin-4-Ylmethyl)-1h-
Pyrazolo[3,4- B]pyridine-4-Carboxylic Acid
Length = 544
Score = 41.6 bits (96), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 45/184 (24%), Positives = 75/184 (40%), Gaps = 20/184 (10%)
Query: 210 MTYKEL-REQVMLVANALDTMFSKGDAIAIDMPMTVRAVIIYLAIILAGYVVVSIADSFA 268
++Y EL R L + KGD + +P I++ A++ AG VV++ S
Sbjct: 56 LSYIELDRLSTNLATRLAEKGLGKGDTALVQLPNVAEFYIVFFALLKAGVVVLNALYSHR 115
Query: 269 AREIATRLRVSKAKGIFTQDFILRGGRKFPLYSKVLGAAPLKAIVLPAIGNDVGIPLREQ 328
E+ ++ + K +L G R+ ++S L + L ++ + L Q
Sbjct: 116 QYELNAFIKQIQPK-------LLIGSRQHEVFSNNQFIDSLHDVNLSP---EIILMLNHQ 165
Query: 329 --DLSWKDFLSSVDYHPRPNYYSPVYNPVDAVVNILFSSGTTGEPKAIPWTQLS---SIR 383
D D++ + P + P D V S G+TG PK IP T S+R
Sbjct: 166 ATDFGLLDWIET----PAETFVDFSSTPADEVAFFQLSGGSTGTPKLIPRTHNDYDYSVR 221
Query: 384 CTAE 387
+AE
Sbjct: 222 ASAE 225
Score = 29.6 bits (65), Expect = 5.9, Method: Compositional matrix adjust.
Identities = 13/28 (46%), Positives = 18/28 (64%)
Query: 594 GDIIKRTVGGYIIVQGRADDTMNLGGIK 621
GD+++RT G + V GR D +N GG K
Sbjct: 421 GDLVQRTPDGNLRVVGRIKDQINRGGEK 448
>pdb|3TSY|A Chain A, 4-Coumaroyl-Coa Ligase::stilbene Synthase Fusion Protein
Length = 979
Score = 40.4 bits (93), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 59/270 (21%), Positives = 106/270 (39%), Gaps = 31/270 (11%)
Query: 221 LVANALDTMFSKGDAIAIDMPMTVRAVIIYLAIILAGYVVVSIADSFAAREIATRLRVSK 280
+ AN ++ D + + +P V+ +LA G + F EIA + + S
Sbjct: 101 IAANFHKLGVNQNDVVMLLLPNCPEFVLSFLAASFRGATATAANPFFTPAEIAKQAKASN 160
Query: 281 AKGIFTQDFILRGGRKFPLYSKVLGAAPLKAIVLPAIGNDVGIPLREQDLSWKDFLSSVD 340
K I T+ + + PL + +V+ I ++ +P+ E L + + S
Sbjct: 161 TKLIITEARYVDKIK--PLQND-------DGVVIVCIDDNESVPIPEGCLRFTELTQST- 210
Query: 341 YHPRPNYYSPVYNPV----DAVVNILFSSGTTGEPKAIPWTQLSSIRCTAEGWAHIDLKV 396
S V + V D VV + +SSGTTG PK + T + A+ +D +
Sbjct: 211 -----TEASEVIDSVEISPDDVVALPYSSGTTGLPKGVMLTHKGLVTSVAQ---QVDGEN 262
Query: 397 GDVYCWPTNLGWVMGPV--------ILFSSFLNGATLALYQGSPLERSFGKFVQDAGVTV 448
++Y ++ + P+ I+ GA + + + + +Q VTV
Sbjct: 263 PNLYFHSDDVILCVLPMFHIYALNSIMLCGLRVGAAILIMPKFEINLLL-ELIQRCKVTV 321
Query: 449 LGTVPSLVKAWRNTNCLEGLDWTKIRSFAS 478
VP +V A ++ E D + IR S
Sbjct: 322 APMVPPIVLAIAKSSETEKYDLSSIRVVKS 351
>pdb|1MDB|A Chain A, Crystal Structure Of Dhbe In Complex With Dhb-adenylate
pdb|1MDF|A Chain A, Crystal Structure Of Dhbe In Absence Of Substrate
Length = 539
Score = 39.7 bits (91), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 17/30 (56%), Positives = 22/30 (73%)
Query: 592 RHGDIIKRTVGGYIIVQGRADDTMNLGGIK 621
R GDI++ T GYI+V+GRA D +N GG K
Sbjct: 410 RTGDIVRLTRDGYIVVEGRAKDQINRGGEK 439
>pdb|1MD9|A Chain A, Crystal Structure Of Dhbe In Complex With Dhb And Amp
Length = 539
Score = 39.7 bits (91), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 17/30 (56%), Positives = 22/30 (73%)
Query: 592 RHGDIIKRTVGGYIIVQGRADDTMNLGGIK 621
R GDI++ T GYI+V+GRA D +N GG K
Sbjct: 410 RTGDIVRLTRDGYIVVEGRAKDQINRGGEK 439
>pdb|3ITE|A Chain A, The Third Adenylation Domain Of The Fungal Sidn Non-
Ribosomal Peptide Synthetase
pdb|3ITE|B Chain B, The Third Adenylation Domain Of The Fungal Sidn Non-
Ribosomal Peptide Synthetase
Length = 562
Score = 39.7 bits (91), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 49/199 (24%), Positives = 81/199 (40%), Gaps = 31/199 (15%)
Query: 211 TYKELREQVMLVANALDTMFSKGDAIAIDMPMTVRAVIIYLAIILAGYVVVSIADSFAAR 270
TYK+L E VAN + G AIA+ + ++ A I + I +G V I
Sbjct: 57 TYKKLNETANQVANLIIHASLHGRAIAVSLDRSLIAFAIIVGIXKSGNTYVPIEAGLPND 116
Query: 271 EIATRLRVSKAKGIFTQDFILRGGRKFPLYSKVLGAAPLKAIVLPAIGNDVGIPLREQDL 330
+ LR S+A F D G + P +KVL ++
Sbjct: 117 RKSFLLRDSRAAXAFVCDNNFD-GVELPPETKVLDT---------------------KNQ 154
Query: 331 SWKDFLSSVDYHPRPNYYSPVYNPVDAVVNILFSSGTTGEPKAIPWTQLSSIRCTAEGWA 390
S+ + LS+ D N Y P + +L++SG+TG PK + ++ ++ ++ W
Sbjct: 155 SFIENLSTQDTSDILNNY-----PENLDAYLLYTSGSTGTPKGVRVSR-HNLSSFSDAWG 208
Query: 391 HIDLKVGDVYCWPTNLGWV 409
+ +G+V LG V
Sbjct: 209 KL---IGNVAPKSLELGGV 224
>pdb|3DHV|A Chain A, Crystal Structure Of Dlta Protein In Complex With
D-Alanine Adenylate
Length = 512
Score = 37.0 bits (84), Expect = 0.031, Method: Compositional matrix adjust.
Identities = 84/442 (19%), Positives = 162/442 (36%), Gaps = 54/442 (12%)
Query: 191 NTVAIVWREDRCDESAVNLMTYKELREQVMLVANALDTMFSKGDA-IAIDMPMTVRAVII 249
+ A VWR+ + +TYK+L+E +A+ + + + + I + M +I
Sbjct: 16 DQTAFVWRDAK--------ITYKQLKEDSDALAHWISSEYPDDRSPIMVYGHMQPEMIIN 67
Query: 250 YLAIILAGYVVVSIADSFAAREIATRLRVSKAKGIFTQDFILRGGRKFPLYSKVLGAAPL 309
+L + AG+ + + S A + S AK + + + L +++ L
Sbjct: 68 FLGCVKAGHAYIPVDLSIPADRVQRIAENSGAKLLLSATAVTVTD----LPVRIVSEDNL 123
Query: 310 KAIVLPAIGNDVGIPLREQDLSWKDFLSSVDYHPRPNYYSPVYNPVDAVVNILFSSGTTG 369
K I GN P E + + N+Y I+++SG+TG
Sbjct: 124 KDIFFTHKGN---TPNPEHAVKGDE-----------NFY------------IIYTSGSTG 157
Query: 370 EPKAIPWTQLSSIRCTAEGWAHIDLKVGDVYCWPTNLGWVMGPVILFSSFLNGATLALYQ 429
PK + T + T +L+ G V+ + + + ++ S + G TL
Sbjct: 158 NPKGVQITYNCLVSFTKWAVEDFNLQTGQVFLNQAPFSFDLSVMDIYPSLVTGGTLWAID 217
Query: 430 GSPLERSFGKF--VQDAGVTVLGTVPSLVKAWRNTNCLEGLDWTKIRSFASTGETSNVDD 487
+ R F ++ + + V + PS + +++F GE +
Sbjct: 218 KDMIARPKDLFASLEQSDIQVWTSTPSFAEMCLMEASFSESMLPNMKTFLFCGEVLPNEV 277
Query: 488 DLWLSSKAWYNAIIESCGGTELSSAYIQGSLLQPQAFGAFSTATM-----TAGLVILDEC 542
L + I+ + G TE + A + G + + + + + L+I+ E
Sbjct: 278 ARKLIERFPKATIMNTYGPTEATVA-VTGIHVTEEVLDQYKSLPVGYCKSDCRLLIMKED 336
Query: 543 GVPYPDDQPCVGEVGLFPLYLGASDRLLNADHEEVYFRGMPMYKGMCLRRHGDIIKRTVG 602
G PD + GE+ + +G S + E+ + M G + GD
Sbjct: 337 GTIAPDGEK--GEI----VIVGPSVSVGYLGSPELTEKAFTMIDGERAYKTGD-AGYVEN 389
Query: 603 GYIIVQGRADDTMNLGGIKALL 624
G + GR D + L G + L
Sbjct: 390 GLLFYNGRLDFQIKLHGYRMEL 411
>pdb|3FCC|A Chain A, Crystal Structure Of Dlta Protein In Complex With Atp And
Magnesium
pdb|3FCE|A Chain A, Crystal Structure Of Bacillus Cereus D-Alanyl Carrier
Protein Ligase Dlta In Complex With Atp: Implications
For Adenylation Mechanism
Length = 512
Score = 37.0 bits (84), Expect = 0.033, Method: Compositional matrix adjust.
Identities = 84/442 (19%), Positives = 162/442 (36%), Gaps = 54/442 (12%)
Query: 191 NTVAIVWREDRCDESAVNLMTYKELREQVMLVANALDTMFSKGDA-IAIDMPMTVRAVII 249
+ A VWR+ + +TYK+L+E +A+ + + + + I + M +I
Sbjct: 16 DQTAFVWRDAK--------ITYKQLKEDSDALAHWISSEYPDDRSPIMVYGHMQPEMIIN 67
Query: 250 YLAIILAGYVVVSIADSFAAREIATRLRVSKAKGIFTQDFILRGGRKFPLYSKVLGAAPL 309
+L + AG+ + + S A + S AK + + + L +++ L
Sbjct: 68 FLGCVKAGHAYIPVDLSIPADRVQRIAENSGAKLLLSATAVTVTD----LPVRIVSEDNL 123
Query: 310 KAIVLPAIGNDVGIPLREQDLSWKDFLSSVDYHPRPNYYSPVYNPVDAVVNILFSSGTTG 369
K I GN P E + + N+Y I+++SG+TG
Sbjct: 124 KDIFFTHKGN---TPNPEHAVKGDE-----------NFY------------IIYTSGSTG 157
Query: 370 EPKAIPWTQLSSIRCTAEGWAHIDLKVGDVYCWPTNLGWVMGPVILFSSFLNGATLALYQ 429
PK + T + T +L+ G V+ + + + ++ S + G TL
Sbjct: 158 NPKGVQITYNCLVSFTKWAVEDFNLQTGQVFLNQAPFSFDLSVMDIYPSLVTGGTLWAID 217
Query: 430 GSPLERSFGKF--VQDAGVTVLGTVPSLVKAWRNTNCLEGLDWTKIRSFASTGETSNVDD 487
+ R F ++ + + V + PS + +++F GE +
Sbjct: 218 KDMIARPKDLFASLEQSDIQVWTSTPSFAEMCLMEASFSESMLPNMKTFLFCGEVLPNEV 277
Query: 488 DLWLSSKAWYNAIIESCGGTELSSAYIQGSLLQPQAFGAFSTATM-----TAGLVILDEC 542
L + I+ + G TE + A + G + + + + + L+I+ E
Sbjct: 278 ARKLIERFPKATIMNTYGPTEATVA-VTGIHVTEEVLDQYKSLPVGYCKSDCRLLIMKED 336
Query: 543 GVPYPDDQPCVGEVGLFPLYLGASDRLLNADHEEVYFRGMPMYKGMCLRRHGDIIKRTVG 602
G PD + GE+ + +G S + E+ + M G + GD
Sbjct: 337 GTIAPDGEK--GEI----VIVGPSVSVGYLGSPELTEKAFTMIDGERAYKTGD-AGYVEN 389
Query: 603 GYIIVQGRADDTMNLGGIKALL 624
G + GR D + L G + L
Sbjct: 390 GLLFYNGRLDFQIKLHGYRMEL 411
>pdb|4GR5|A Chain A, Crystal Structure Of Slgn1deltaasub In Complex With Ampcpp
pdb|4GR5|B Chain B, Crystal Structure Of Slgn1deltaasub In Complex With Ampcpp
pdb|4GR5|C Chain C, Crystal Structure Of Slgn1deltaasub In Complex With Ampcpp
pdb|4GR5|D Chain D, Crystal Structure Of Slgn1deltaasub In Complex With Ampcpp
Length = 570
Score = 35.0 bits (79), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 30/101 (29%), Positives = 47/101 (46%), Gaps = 6/101 (5%)
Query: 358 VVNILFSSGTTGEPKAIPWTQLSSIRCTAEGWAHIDLKVGDVYCWPTNLGWVMGPVILFS 417
V ++F+SG+TG PK + + ++ T G + +V+ + + W + LF
Sbjct: 216 VACVMFTSGSTGRPKGV-MSPHRALTGTYLGQDYAGFGPDEVFLQCSPVSWDAFGLELFG 274
Query: 418 SFLNGATLALYQGS---PLERSFGKFVQDAGVTVLGTVPSL 455
+ L GA L G PLE G+ V GVT+L SL
Sbjct: 275 ALLFGARCVLQSGQNPDPLE--IGELVARHGVTMLQLSASL 313
>pdb|4GR4|A Chain A, Crystal Structure Of Slgn1deltaasub
pdb|4GR4|B Chain B, Crystal Structure Of Slgn1deltaasub
pdb|4GR4|C Chain C, Crystal Structure Of Slgn1deltaasub
pdb|4GR4|D Chain D, Crystal Structure Of Slgn1deltaasub
Length = 469
Score = 35.0 bits (79), Expect = 0.15, Method: Compositional matrix adjust.
Identities = 58/250 (23%), Positives = 96/250 (38%), Gaps = 41/250 (16%)
Query: 210 MTYKELREQVMLVANALDTM-FSKGDAIAIDMPMTVRAVIIYLAIILAGYVVVSIADSFA 268
+TY L E+ +A+ L + + G + + + V+ LA++ AG + F
Sbjct: 101 LTYGALNERANRLAHRLVGLGVAPGTLVGVHLERGFDMVVALLAVLKAGGGYTMLDPQFP 160
Query: 269 AREIATRLRVSKAKGIFTQDFILRGGRKFPLYSKVLGAAPLKAIVLPAIGNDVGIPLREQ 328
+A L + A + T PL ++ G L +
Sbjct: 161 VERLALSLEDTGAPLLVTSR---------PLSGRLTGTTTLYV----------------E 195
Query: 329 DLSWKDFLSSVDYHPRPNYYSPVYNPVDAVVNILFSSGTTGEPKAIPWTQLSSIRCTAEG 388
D + D P N + V P D V ++F+SG+TG PK + + ++ T G
Sbjct: 196 DEAASDA-------PAGNLATGV-GPED-VACVMFTSGSTGRPKGV-MSPHRALTGTYLG 245
Query: 389 WAHIDLKVGDVYCWPTNLGWVMGPVILFSSFLNGATLALYQGS---PLERSFGKFVQDAG 445
+ +V+ + + W + LF + L GA L G PLE G+ V G
Sbjct: 246 QDYAGFGPDEVFLQCSPVSWDAFGLELFGALLFGARCVLQSGQNPDPLE--IGELVARHG 303
Query: 446 VTVLGTVPSL 455
VT+L SL
Sbjct: 304 VTMLQLSASL 313
>pdb|3VNQ|A Chain A, Co-crystal Structure Of Nrps Adenylation Protein Cytc1
With Atp From Streptomyces
pdb|3VNR|A Chain A, Co-crystal Structure Of Nrps Adenylation Protein Cytc1
With Aminobutyric Acid And Amp From Streptomyces
pdb|3VNS|A Chain A, Co-crystal Structure Of Nrps Adenylation Protein Cytc1
With D-valine And Amp From Streptomyces
Length = 544
Score = 34.7 bits (78), Expect = 0.17, Method: Compositional matrix adjust.
Identities = 33/144 (22%), Positives = 58/144 (40%), Gaps = 3/144 (2%)
Query: 340 DYHPRPNYYSPVYNPVDAVVNILFSSGTTGEPKAIPWTQLSSIRCTAEGWAHIDLKVGDV 399
D P P +P D + ++++SGTTG PK +P + + A + D D
Sbjct: 160 DAEPGPVTGAPGPGAED-MAYVIYTSGTTGNPKGVPVRHANVLALLAGAPSVFDFSGDDR 218
Query: 400 YCWPTNLGWVMGPVILFSSFLNGATLAL--YQGSPLERSFGKFVQDAGVTVLGTVPSLVK 457
+ +L + ++ +F GA L + + + + + D GVTV+ P+
Sbjct: 219 WLLFHSLSFDFSVWEIWGAFSTGAELVVLPHWAARTPEQYLAVIIDRGVTVINQTPTAFL 278
Query: 458 AWRNTNCLEGLDWTKIRSFASTGE 481
A G D + +R GE
Sbjct: 279 ALTEAAVRGGRDVSGLRYVIFGGE 302
>pdb|3IPL|A Chain A, Crystal Structure Of O-Succinylbenzoic Acid-Coa Ligase
From Staphylococcus Aureus Subsp. Aureus Mu50
pdb|3IPL|B Chain B, Crystal Structure Of O-Succinylbenzoic Acid-Coa Ligase
From Staphylococcus Aureus Subsp. Aureus Mu50
pdb|3IPL|C Chain C, Crystal Structure Of O-Succinylbenzoic Acid-Coa Ligase
From Staphylococcus Aureus Subsp. Aureus Mu50
Length = 501
Score = 34.3 bits (77), Expect = 0.22, Method: Compositional matrix adjust.
Identities = 43/168 (25%), Positives = 73/168 (43%), Gaps = 12/168 (7%)
Query: 211 TYKELREQVMLVANALDTMFSKGDAIAIDMPMTVRAVIIYLAIILAGYVVVSIADSFAAR 270
TY+ L + L+A L + ID +++++I+ A LA + I
Sbjct: 28 TYQNLYCEASLLAKRLKAYQQSRVGLYIDN--SIQSIILIHACWLANIEIAMINTRLTPN 85
Query: 271 EIATRLRVSKAKGIF-TQDFILRGGRKFPLYSKVLGAAPLKAIVLPAIGNDVGIPLREQD 329
E+ ++R + IF T LRG + L + L + N +GI + D
Sbjct: 86 EMTNQMRSIDVQLIFCTLPLELRGFQIVSLDDIEFAGRDITTNGL--LDNTMGI---QYD 140
Query: 330 LSWKDFLSSVDYHPRPNYYSPVYNPVDAVVNILFSSGTTGEPKAIPWT 377
S + + V N + +N +D + +I+F+SGTTG KA+P T
Sbjct: 141 TSNE---TVVPKESPSNILNTSFN-LDDIASIMFTSGTTGPQKAVPQT 184
>pdb|2V7B|A Chain A, Crystal Structures Of A Benzoate Coa Ligase From
Burkholderia Xenovorans Lb400
pdb|2V7B|B Chain B, Crystal Structures Of A Benzoate Coa Ligase From
Burkholderia Xenovorans Lb400
Length = 529
Score = 32.7 bits (73), Expect = 0.72, Method: Compositional matrix adjust.
Identities = 63/264 (23%), Positives = 108/264 (40%), Gaps = 22/264 (8%)
Query: 362 LFSSGTTGEPKAIPWTQLSSIRCTAEGWAHIDLKVG--DVYCWPTNL--GWVMGPVILFS 417
L+SSG+TG+PK T +++ TAE +A L + DV L + +G + F
Sbjct: 189 LYSSGSTGKPKGTVHTH-ANLYWTAELYAKPILGIAENDVVFSAAKLFFAYGLGNGLTFP 247
Query: 418 SFLNGATLALYQGSPLERSFGKFVQDAGVTVLGTVPSLVKAWRNTNCLEGLDWTKIRSFA 477
+ + + + + F + V+ TV VP+L + L IR
Sbjct: 248 LSVGATAILMAERPTADAIFARLVEHRP-TVFYGVPTLYANMLVSPNLPARADVAIRICT 306
Query: 478 STGETSNVDDDLWLSSKAWYNA-IIESCGGTELSSAYIQGSLLQPQAFGAFSTATMTAGL 536
S GE + ++ A + I++ G TE+ ++ + +G +
Sbjct: 307 SAGEA--LPREIGERFTAHFGCEILDGIGSTEMLHIFLSNRAGAVE-YGTTGRPVPGYEI 363
Query: 537 VILDECGVPYPDDQPCVGEVGLFPLYL-GASDRLLNADHEEVYFRGMPMYKGMCLRRHGD 595
+ DE G PD GEVG LY+ G S ++ ++ E + + G +R GD
Sbjct: 364 ELRDEAGHAVPD-----GEVG--DLYIKGPSAAVMYWNNRE---KSRATFLGEWIRS-GD 412
Query: 596 IIKRTVGGYIIVQGRADDTMNLGG 619
R G + GR+DD + + G
Sbjct: 413 KYCRLPNGCYVYAGRSDDMLKVSG 436
>pdb|4FUQ|A Chain A, Crystal Structure Of Apo Matb From Rhodopseudomonas
Palustris
pdb|4FUQ|B Chain B, Crystal Structure Of Apo Matb From Rhodopseudomonas
Palustris
pdb|4FUQ|C Chain C, Crystal Structure Of Apo Matb From Rhodopseudomonas
Palustris
pdb|4FUQ|D Chain D, Crystal Structure Of Apo Matb From Rhodopseudomonas
Palustris
Length = 503
Score = 32.3 bits (72), Expect = 0.79, Method: Compositional matrix adjust.
Identities = 20/72 (27%), Positives = 37/72 (51%), Gaps = 1/72 (1%)
Query: 202 CDESAVNLMTYKELREQVMLVANALDTM-FSKGDAIAIDMPMTVRAVIIYLAIILAGYVV 260
+ +A + ++Y EL + VAN L GD +A +V A+++YLA + AG V
Sbjct: 21 IETAAGDKISYAELVARAGRVANVLVARGLQVGDRVAAQTEKSVEALVLYLATVRAGGVY 80
Query: 261 VSIADSFAAREI 272
+ + ++ E+
Sbjct: 81 LPLNTAYTLHEL 92
>pdb|4DG8|A Chain A, Structure Of Pa1221, An Nrps Protein Containing
Adenylation And Pcp Domains
pdb|4DG9|A Chain A, Structure Of Holo-Pa1221, An Nrps Protein Containing
Adenylation And Pcp Domains Bound To Vinylsulfonamide
Inhibitor
Length = 620
Score = 32.3 bits (72), Expect = 0.86, Method: Compositional matrix adjust.
Identities = 65/278 (23%), Positives = 104/278 (37%), Gaps = 23/278 (8%)
Query: 355 VDAVVNILFSSGTTGEPKAIPWTQLSSIR-CTAEGWAHIDLKVGDVYCWPTNLGWVMGPV 413
D + I FSSGTTG PKAI T R C + + ++ + P L + +
Sbjct: 163 ADQIAYINFSSGTTGRPKAIACTHAGITRLCLGQSFLAFAPQMRFLVNSP--LSFDAATL 220
Query: 414 ILFSSFLNGATLALYQGSPLERS-FGKFVQDAGVTVLGTVPSLVKAW--RNTNCLEGLDW 470
++ + LNG L PL+ + + + G SL + +CL GL
Sbjct: 221 EIWGALLNGGCCVLNDLGPLDPGVLRQLIGERGADSAWLTASLFNTLVDLDPDCLGGL-- 278
Query: 471 TKIRSFASTGETSNVDDDLWLSSKAWYNAIIESCGGTE---LSSAYIQGSLLQPQAFGAF 527
R + G+ +V + ++ G TE + ++ +
Sbjct: 279 ---RQLLTGGDILSVPHVRRALLRHPRLHLVNGYGPTENTTFTCCHVVTDDDLEEDDIPI 335
Query: 528 STATMTAGLVILDECG--VPYPDDQPCVGEVGLFPLYLGASDRLLNADHEEVYFRGMPMY 585
A +++LDE G + PD GE+ F L R +A F +P Y
Sbjct: 336 GKAIAGTAVLLLDEHGQEIAEPDR---AGEIVAFGAGLAQGYR-NDAARTRASFVELP-Y 390
Query: 586 KGMCLR--RHGDIIKRTVGGYIIVQGRADDTMNLGGIK 621
+G LR R GD + G + GR D + L G +
Sbjct: 391 RGRLLRAYRTGDRARYDEQGRLRFIGRGDGQVKLNGYR 428
>pdb|4GXR|A Chain A, Structure Of Atp Bound Rpmatb-Bxbclm Chimera B3
Length = 503
Score = 32.0 bits (71), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 20/72 (27%), Positives = 37/72 (51%), Gaps = 1/72 (1%)
Query: 202 CDESAVNLMTYKELREQVMLVANALDTM-FSKGDAIAIDMPMTVRAVIIYLAIILAGYVV 260
+ +A + ++Y EL + VAN L GD +A +V A+++YLA + AG V
Sbjct: 21 IETAAGDXISYAELVARAGRVANVLVARGLQVGDRVAAQTEXSVEALVLYLATVRAGGVY 80
Query: 261 VSIADSFAAREI 272
+ + ++ E+
Sbjct: 81 LPLNTAYTLHEL 92
>pdb|4FUT|A Chain A, Crystal Structure Of Atp Bound Matb From Rhodopseudomonas
Palustris
Length = 503
Score = 32.0 bits (71), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 20/72 (27%), Positives = 37/72 (51%), Gaps = 1/72 (1%)
Query: 202 CDESAVNLMTYKELREQVMLVANALDTM-FSKGDAIAIDMPMTVRAVIIYLAIILAGYVV 260
+ +A + ++Y EL + VAN L GD +A +V A+++YLA + AG V
Sbjct: 21 IETAAGDXISYAELVARAGRVANVLVARGLQVGDRVAAQTEXSVEALVLYLATVRAGGVY 80
Query: 261 VSIADSFAAREI 272
+ + ++ E+
Sbjct: 81 LPLNTAYTLHEL 92
>pdb|4GXQ|A Chain A, Crystal Structure Of Atp Bound Rpmatb-Bxbclm Chimera B1
pdb|4GXQ|B Chain B, Crystal Structure Of Atp Bound Rpmatb-Bxbclm Chimera B1
pdb|4GXQ|C Chain C, Crystal Structure Of Atp Bound Rpmatb-Bxbclm Chimera B1
Length = 506
Score = 31.6 bits (70), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 20/72 (27%), Positives = 37/72 (51%), Gaps = 1/72 (1%)
Query: 202 CDESAVNLMTYKELREQVMLVANALDTM-FSKGDAIAIDMPMTVRAVIIYLAIILAGYVV 260
+ +A + ++Y EL + VAN L GD +A +V A+++YLA + AG V
Sbjct: 21 IETAAGDXISYAELVARAGRVANVLVARGLQVGDRVAAQTEXSVEALVLYLATVRAGGVY 80
Query: 261 VSIADSFAAREI 272
+ + ++ E+
Sbjct: 81 LPLNTAYTLHEL 92
>pdb|3E7W|A Chain A, Crystal Structure Of Dlta: Implications For The Reaction
Mechanism Of Non-Ribosomal Peptide Synthetase (Nrps)
Adenylation Domains
pdb|3E7X|A Chain A, Crystal Structure Of Dlta: Implications For The Reaction
Mechanism Of Non-Ribosomal Peptide Synthetase (Nrps)
Adenylation Domains
Length = 511
Score = 31.6 bits (70), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 62/283 (21%), Positives = 108/283 (38%), Gaps = 29/283 (10%)
Query: 361 ILFSSGTTGEPKAIPWTQLSSIRCTA-EGWAHIDLKV--GDVYCWPTNLGWVMGPVILFS 417
I+++SG+TG PK + Q+S+ + W D V G ++ + + + L+
Sbjct: 148 IIYTSGSTGNPKGV---QISAANLQSFTDWICADFPVSGGKIFLNQAPFSFDLSVMDLYP 204
Query: 418 SFLNGATLALYQGSPLERSFGKF--VQDAGVTVLGTVPSLVKAWRNTNCLEGLDWTK--- 472
+G TL + + F ++ +G+ V + PS V+ CL +++
Sbjct: 205 CLQSGGTLHCVTKDAVNKPKVLFEELKKSGLNVWTSTPSFVQM-----CLMDPGFSQDLL 259
Query: 473 --IRSFASTGETSNVDDDLWLSSKAWYNAIIESCGGTE----LSSAYIQGSLLQPQAFGA 526
+F GE V L + I + G TE ++S I ++
Sbjct: 260 PHADTFMFCGEVLPVSVAKALLERFPKAKIFNTYGPTEATVAVTSVEITNDVISRSESLP 319
Query: 527 FSTATMTAGLVILDECGVPYPDDQPCVGEVGLFPLYLGASDRLLNADHEEVYFRGMPMYK 586
A + I+DE G P P+ + GE+ + G S E+ + ++
Sbjct: 320 VGFAKPDMNIFIMDEEGQPLPEGEK--GEI----VIAGPSVSRGYLGEPELTEKAFFSHE 373
Query: 587 GMCLRRHGDIIKRTVGGYIIVQGRADDTMNLGGIKALLLPLTF 629
G R GD G I QGR D + L G + L + F
Sbjct: 374 GQWAYRTGD-AGFIQDGQIFCQGRLDFQIKLHGYRMELEEIEF 415
>pdb|4AC0|A Chain A, Tetr(B) In Complex With Minocycline And Magnesium
Length = 202
Score = 31.2 bits (69), Expect = 1.8, Method: Composition-based stats.
Identities = 20/52 (38%), Positives = 28/52 (53%), Gaps = 7/52 (13%)
Query: 90 LDQSKLTNLGNALEIHGPKLLGRAYKDPITSFRLFQKFTVEHPEAYWEIALK 141
LD+SK+ N +ALE LL + +T+ +L QK VE P YW + K
Sbjct: 3 LDKSKVIN--SALE-----LLNEVGIEGLTTRKLAQKLGVEQPTLYWHVKNK 47
>pdb|2NS7|A Chain A, How An In Vitro Selected Peptide Mimics The Antibiotic
Tetracycline To Induce Tet Repressor
pdb|2NS7|B Chain B, How An In Vitro Selected Peptide Mimics The Antibiotic
Tetracycline To Induce Tet Repressor
pdb|2NS7|C Chain C, How An In Vitro Selected Peptide Mimics The Antibiotic
Tetracycline To Induce Tet Repressor
pdb|2NS7|D Chain D, How An In Vitro Selected Peptide Mimics The Antibiotic
Tetracycline To Induce Tet Repressor
pdb|2NS8|A Chain A, How An In Vitro Selected Peptide Mimics The Antibiotic
Tetracycline To Induce Tet Repressor
pdb|2NS8|B Chain B, How An In Vitro Selected Peptide Mimics The Antibiotic
Tetracycline To Induce Tet Repressor
pdb|2NS8|C Chain C, How An In Vitro Selected Peptide Mimics The Antibiotic
Tetracycline To Induce Tet Repressor
pdb|2NS8|D Chain D, How An In Vitro Selected Peptide Mimics The Antibiotic
Tetracycline To Induce Tet Repressor
pdb|3ZQF|A Chain A, Structure Of Tetracycline Repressor In Complex With
Antiinducer Peptide-Tap1
pdb|3ZQG|A Chain A, Structure Of Tetracycline Repressor In Complex With
Antiinducer Peptide-Tap2
pdb|3ZQH|A Chain A, Structure Of Tetracycline Repressor In Complex With
Inducer Peptide-Tip3
pdb|3ZQI|A Chain A, Structure Of Tetracycline Repressor In Complex With
Inducer Peptide-Tip2
pdb|3ZQI|B Chain B, Structure Of Tetracycline Repressor In Complex With
Inducer Peptide-Tip2
Length = 208
Score = 31.2 bits (69), Expect = 1.8, Method: Composition-based stats.
Identities = 20/52 (38%), Positives = 28/52 (53%), Gaps = 7/52 (13%)
Query: 90 LDQSKLTNLGNALEIHGPKLLGRAYKDPITSFRLFQKFTVEHPEAYWEIALK 141
LD+SK+ N +ALE LL + +T+ +L QK VE P YW + K
Sbjct: 4 LDKSKVIN--SALE-----LLNEVGIEGLTTRKLAQKLGVEQPTLYWHVKNK 48
>pdb|1S5W|A Chain A, Crystal Structure Analysis Of A Mutant Of
Dihydrodipicolinate Synthase--Residue Tyr133 To Phe133
pdb|1S5W|B Chain B, Crystal Structure Analysis Of A Mutant Of
Dihydrodipicolinate Synthase--Residue Tyr133 To Phe133
Length = 292
Score = 31.2 bits (69), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 38/144 (26%), Positives = 66/144 (45%), Gaps = 30/144 (20%)
Query: 166 TWLPGSVLNIAE---CCLLPSNHRR--KEDNTVAIVWREDRCDESAVNLMTYKELREQVM 220
T LP + N+ C LLP R K N + I E+ NL +++E
Sbjct: 126 TDLPQILFNVPSRTGCDLLPETVGRLAKVKNIIGI-------KEATGNLTRVNQIKE--- 175
Query: 221 LVANALDTMFSKGDAIAIDMPMTVRAVIIYLAIILAGYVVVSIADSFAAREIATRLRVSK 280
LV++ + S DA A+D + L G+ V+S+ + AAR++A +++
Sbjct: 176 LVSDDF-VLLSGDDASALDF------------MQLGGHGVISVTANVAARDMAQMCKLA- 221
Query: 281 AKGIFTQDFILRGGRKFPLYSKVL 304
A+G F + ++ R PL++K+
Sbjct: 222 AEGHFAEARVIN-QRLMPLHNKLF 244
>pdb|2VKV|A Chain A, Tetr (Bd) Variant L17g With Reverse Phenotype
Length = 208
Score = 30.4 bits (67), Expect = 3.3, Method: Compositional matrix adjust.
Identities = 20/56 (35%), Positives = 27/56 (48%), Gaps = 15/56 (26%)
Query: 90 LDQSKLTN----LGNALEIHGPKLLGRAYKDPITSFRLFQKFTVEHPEAYWEIALK 141
LD+SK+ N LGN + I G +T+ +L QK VE P YW + K
Sbjct: 4 LDKSKVINSALELGNEVGIEG-----------LTTRKLAQKLGVEQPTLYWHVKNK 48
>pdb|1A6I|A Chain A, Tet Repressor, Class D Variant
Length = 217
Score = 30.0 bits (66), Expect = 4.9, Method: Compositional matrix adjust.
Identities = 20/52 (38%), Positives = 28/52 (53%), Gaps = 7/52 (13%)
Query: 90 LDQSKLTNLGNALEIHGPKLLGRAYKDPITSFRLFQKFTVEHPEAYWEIALK 141
LD+SK+ N +ALE LL + +T+ +L QK VE P YW + K
Sbjct: 3 LDKSKVIN--SALE-----LLNEVGIEGLTTRKLAQKLGVEQPTLYWHVKNK 47
>pdb|2XGC|B Chain B, Crystal Structure Of A Designed Heterodimeric Variant
T-A(I) B Of The Tetracycline Repressor
pdb|2XGE|B Chain B, Crystal Structure Of A Designed Heterodimeric Variant
T-A(A) B Of The Tetracycline Repressor
Length = 211
Score = 29.6 bits (65), Expect = 4.9, Method: Compositional matrix adjust.
Identities = 20/52 (38%), Positives = 28/52 (53%), Gaps = 7/52 (13%)
Query: 90 LDQSKLTNLGNALEIHGPKLLGRAYKDPITSFRLFQKFTVEHPEAYWEIALK 141
LD+SK+ N +ALE LL + +T+ +L QK VE P YW + K
Sbjct: 7 LDKSKVIN--SALE-----LLNEVGIEGLTTRKLAQKLGVEQPTLYWHVKNK 51
>pdb|2XGC|A Chain A, Crystal Structure Of A Designed Heterodimeric Variant
T-A(I) B Of The Tetracycline Repressor
Length = 208
Score = 29.6 bits (65), Expect = 5.0, Method: Compositional matrix adjust.
Identities = 20/52 (38%), Positives = 28/52 (53%), Gaps = 7/52 (13%)
Query: 90 LDQSKLTNLGNALEIHGPKLLGRAYKDPITSFRLFQKFTVEHPEAYWEIALK 141
LD+SK+ N +ALE LL + +T+ +L QK VE P YW + K
Sbjct: 4 LDKSKVIN--SALE-----LLNEVGIEGLTTRKLAQKLGVEQPTLYWHVKNK 48
>pdb|2XGE|A Chain A, Crystal Structure Of A Designed Heterodimeric Variant
T-A(A) B Of The Tetracycline Repressor
Length = 208
Score = 29.6 bits (65), Expect = 5.1, Method: Compositional matrix adjust.
Identities = 20/52 (38%), Positives = 28/52 (53%), Gaps = 7/52 (13%)
Query: 90 LDQSKLTNLGNALEIHGPKLLGRAYKDPITSFRLFQKFTVEHPEAYWEIALK 141
LD+SK+ N +ALE LL + +T+ +L QK VE P YW + K
Sbjct: 4 LDKSKVIN--SALE-----LLNEVGIEGLTTRKLAQKLGVEQPTLYWHVKNK 48
>pdb|2XGD|A Chain A, Crystal Structure Of A Designed Homodimeric Variant
T-A(L)a( L) Of The Tetracycline Repressor
Length = 208
Score = 29.6 bits (65), Expect = 5.1, Method: Compositional matrix adjust.
Identities = 20/52 (38%), Positives = 28/52 (53%), Gaps = 7/52 (13%)
Query: 90 LDQSKLTNLGNALEIHGPKLLGRAYKDPITSFRLFQKFTVEHPEAYWEIALK 141
LD+SK+ N +ALE LL + +T+ +L QK VE P YW + K
Sbjct: 4 LDKSKVIN--SALE-----LLNEVGIEGLTTRKLAQKLGVEQPTLYWHVKNK 48
>pdb|3FK6|A Chain A, Crystal Structure Of Tetr Triple Mutant (H64k, S135l,
S138i)
pdb|3FK6|B Chain B, Crystal Structure Of Tetr Triple Mutant (H64k, S135l,
S138i)
pdb|3FK7|A Chain A, Crystal Structure Of Tetr Triple Mutant (H64k, S135l,
S138i) In Complex With 4-Ddma-Atc
pdb|3FK7|B Chain B, Crystal Structure Of Tetr Triple Mutant (H64k, S135l,
S138i) In Complex With 4-Ddma-Atc
Length = 208
Score = 29.6 bits (65), Expect = 5.4, Method: Compositional matrix adjust.
Identities = 20/52 (38%), Positives = 28/52 (53%), Gaps = 7/52 (13%)
Query: 90 LDQSKLTNLGNALEIHGPKLLGRAYKDPITSFRLFQKFTVEHPEAYWEIALK 141
LD+SK+ N +ALE LL + +T+ +L QK VE P YW + K
Sbjct: 4 LDKSKVIN--SALE-----LLNEVGIEGLTTRKLAQKLGVEQPTLYWHVKNK 48
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.322 0.138 0.433
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 20,449,188
Number of Sequences: 62578
Number of extensions: 901098
Number of successful extensions: 1774
Number of sequences better than 100.0: 47
Number of HSP's better than 100.0 without gapping: 24
Number of HSP's successfully gapped in prelim test: 23
Number of HSP's that attempted gapping in prelim test: 1697
Number of HSP's gapped (non-prelim): 66
length of query: 660
length of database: 14,973,337
effective HSP length: 105
effective length of query: 555
effective length of database: 8,402,647
effective search space: 4663469085
effective search space used: 4663469085
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 55 (25.8 bits)