Query 006121
Match_columns 660
No_of_seqs 420 out of 3047
Neff 9.3
Searched_HMMs 29240
Date Mon Mar 25 16:31:00 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/006121.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/006121hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2vsq_A Surfactin synthetase su 100.0 2.7E-87 9.2E-92 815.9 23.1 577 16-658 304-908 (1304)
2 1ry2_A Acetyl-coenzyme A synth 100.0 5.6E-76 1.9E-80 668.9 50.7 526 114-658 19-573 (663)
3 1pg4_A Acetyl-COA synthetase; 100.0 4.4E-76 1.5E-80 669.4 49.6 518 120-658 23-564 (652)
4 4dg8_A PA1221; ANL superfamily 100.0 6.2E-75 2.1E-79 654.7 41.4 417 185-658 36-465 (620)
5 3g7s_A Long-chain-fatty-acid-- 100.0 1.1E-71 3.7E-76 622.3 40.1 442 185-658 28-486 (549)
6 3ni2_A 4-coumarate:COA ligase; 100.0 4.5E-71 1.5E-75 615.4 42.9 434 185-658 31-481 (536)
7 3etc_A AMP-binding protein; ad 100.0 1E-70 3.5E-75 616.9 45.2 462 166-658 48-522 (580)
8 3rg2_A Enterobactin synthase c 100.0 1.8E-70 6E-75 620.5 43.6 430 190-658 39-481 (617)
9 4gr5_A Non-ribosomal peptide s 100.0 3.2E-71 1.1E-75 621.0 36.8 420 185-658 84-516 (570)
10 1amu_A GRSA, gramicidin synthe 100.0 1.3E-70 4.6E-75 614.1 41.4 417 185-658 48-477 (563)
11 1mdb_A 2,3-dihydroxybenzoate-A 100.0 6.3E-71 2.2E-75 614.4 36.7 433 185-658 34-477 (539)
12 4fuq_A Malonyl COA synthetase; 100.0 4.6E-70 1.6E-74 602.3 42.8 428 186-658 10-446 (503)
13 3tsy_A Fusion protein 4-coumar 100.0 6E-70 2E-74 647.5 41.8 501 114-658 11-528 (979)
14 3r44_A Fatty acyl COA syntheta 100.0 2E-70 6.7E-75 607.4 34.4 425 185-657 25-459 (517)
15 3o83_A Peptide arylation enzym 100.0 2.2E-70 7.4E-75 610.8 34.2 437 185-658 39-486 (544)
16 3e7w_A D-alanine--poly(phospho 100.0 1.4E-69 4.9E-74 600.0 39.9 422 185-658 10-445 (511)
17 1v25_A Long-chain-fatty-acid-C 100.0 1.1E-69 3.6E-74 604.9 38.4 433 186-658 28-482 (541)
18 3fce_A D-alanine--poly(phospho 100.0 8.9E-70 3E-74 602.0 35.8 423 186-658 11-446 (512)
19 1t5h_X 4-chlorobenzoyl COA lig 100.0 1.2E-68 4.2E-73 591.5 43.3 419 185-658 11-449 (504)
20 2d1s_A Luciferase, luciferin 4 100.0 8.2E-69 2.8E-73 598.3 41.4 433 186-658 36-488 (548)
21 3c5e_A Acyl-coenzyme A synthet 100.0 2.4E-68 8.3E-73 596.7 44.6 454 165-658 29-503 (570)
22 3rix_A Luciferase, luciferin 4 100.0 7E-70 2.4E-74 607.8 31.3 439 186-657 30-485 (550)
23 3l8c_A D-alanine--poly(phospho 100.0 3.6E-69 1.2E-73 598.5 36.0 423 185-658 13-451 (521)
24 2v7b_A Benzoate-coenzyme A lig 100.0 3.6E-68 1.2E-72 591.5 41.7 441 174-658 24-475 (529)
25 3ivr_A Putative long-chain-fat 100.0 1.1E-68 3.8E-73 592.7 35.2 424 185-658 15-447 (509)
26 3nyq_A Malonyl-COA ligase; A/B 100.0 2E-67 6.9E-72 581.2 33.4 408 185-658 31-453 (505)
27 3ipl_A 2-succinylbenzoate--COA 100.0 3.2E-66 1.1E-70 572.1 37.7 429 185-658 10-445 (501)
28 3kxw_A Saframycin MX1 syntheta 100.0 1.6E-66 5.4E-71 586.5 32.9 433 185-658 20-507 (590)
29 3ite_A SIDN siderophore synthe 100.0 4.9E-66 1.7E-70 578.6 31.9 415 185-645 29-461 (562)
30 3gqw_A Fatty acid AMP ligase; 100.0 3.4E-64 1.2E-68 565.9 38.4 418 185-651 30-500 (576)
31 3t5a_A Long-chain-fatty-acid-- 100.0 4E-60 1.4E-64 520.8 27.5 386 185-610 33-480 (480)
32 4gs5_A Acyl-COA synthetase (AM 100.0 1.6E-45 5.4E-50 387.5 19.5 261 355-658 36-301 (358)
33 3qov_A Phenylacetate-coenzyme 100.0 4.5E-44 1.5E-48 387.8 23.6 280 352-658 81-378 (436)
34 2y4o_A Phenylacetate-coenzyme 100.0 7E-43 2.4E-47 379.2 23.7 280 352-658 88-382 (443)
35 2y27_A Phenylacetate-coenzyme 100.0 1.2E-42 4.2E-47 376.6 24.0 280 352-658 86-380 (437)
36 3hgu_A EHPF; phenazine, antibi 100.0 8.6E-34 3E-38 300.1 17.4 236 353-620 88-368 (369)
37 4eql_A 4-substituted benzoates 98.8 1.7E-08 5.9E-13 109.7 10.5 134 470-635 296-448 (581)
38 4b2g_A GH3-1 auxin conjugating 98.7 3.8E-08 1.3E-12 107.1 11.6 43 591-633 412-458 (609)
39 2jgp_A Tyrocidine synthetase 3 98.7 2.4E-10 8.1E-15 125.9 -7.1 128 16-151 377-514 (520)
40 4epl_A Jasmonic acid-amido syn 98.6 1.6E-07 5.3E-12 101.9 12.9 133 470-633 301-453 (581)
41 3lax_A Phenylacetate-coenzyme 98.5 1E-07 3.5E-12 80.7 5.3 50 609-658 1-51 (109)
42 3gxs_A Phenylacetate-coenzyme 98.4 2.2E-07 7.7E-12 78.5 5.3 50 609-658 1-51 (109)
43 4hvm_A Tlmii; PSI-biology, mid 98.3 1E-08 3.5E-13 111.9 -7.2 128 17-154 303-468 (493)
44 1l5a_A Amide synthase, VIBH; n 98.2 1.3E-08 4.3E-13 109.3 -8.4 132 15-157 280-421 (436)
45 2xhg_A Tyrocidine synthetase A 97.0 1.5E-05 5E-10 86.0 -6.5 123 16-147 312-457 (466)
46 1q9j_A PAPA5, polyketide synth 92.8 0.0066 2.3E-07 63.9 -3.7 107 23-147 297-417 (422)
47 2y27_A Phenylacetate-coenzyme 88.3 3.2 0.00011 43.4 12.2 99 189-289 88-191 (437)
48 2y4o_A Phenylacetate-coenzyme 87.3 3.8 0.00013 42.9 12.0 99 189-289 90-193 (443)
49 3qov_A Phenylacetate-coenzyme 86.3 4.4 0.00015 42.2 11.8 98 191-289 86-187 (436)
50 3ivr_A Putative long-chain-fat 81.8 7.8 0.00027 41.3 11.6 95 354-458 19-116 (509)
51 1v25_A Long-chain-fatty-acid-C 81.8 11 0.00039 40.4 12.9 100 354-459 31-133 (541)
52 3rix_A Luciferase, luciferin 4 81.2 4.2 0.00014 44.0 9.2 101 355-460 34-137 (550)
53 3g7s_A Long-chain-fatty-acid-- 79.5 12 0.0004 40.4 12.1 104 354-460 32-139 (549)
54 3c5e_A Acyl-coenzyme A synthet 78.4 17 0.00057 39.4 12.9 102 354-460 56-161 (570)
55 3ni2_A 4-coumarate:COA ligase; 76.8 9.4 0.00032 41.0 10.3 97 354-458 35-134 (536)
56 1t5h_X 4-chlorobenzoyl COA lig 74.9 17 0.00057 38.7 11.5 98 354-459 15-117 (504)
57 3t5a_A Long-chain-fatty-acid-- 73.3 21 0.0007 37.5 11.7 104 354-461 37-148 (480)
58 2v7b_A Benzoate-coenzyme A lig 73.1 12 0.00042 40.0 10.0 96 354-459 36-134 (529)
59 3r44_A Fatty acyl COA syntheta 72.8 17 0.00058 38.7 11.0 95 354-456 29-126 (517)
60 1amu_A GRSA, gramicidin synthe 72.0 18 0.00063 39.0 11.1 96 354-459 52-150 (563)
61 1ry2_A Acetyl-coenzyme A synth 71.4 19 0.00066 39.8 11.3 97 354-454 95-195 (663)
62 3etc_A AMP-binding protein; ad 70.6 22 0.00074 38.6 11.3 95 354-453 69-166 (580)
63 4fuq_A Malonyl COA synthetase; 69.4 18 0.00062 38.4 10.2 81 374-455 27-110 (503)
64 1mdb_A 2,3-dihydroxybenzoate-A 69.4 33 0.0011 36.7 12.3 90 354-453 38-130 (539)
65 4gr5_A Non-ribosomal peptide s 67.1 24 0.00082 38.1 10.7 92 354-455 88-182 (570)
66 1pg4_A Acetyl-COA synthetase; 67.1 27 0.00092 38.5 11.3 96 354-453 89-187 (652)
67 3kxw_A Saframycin MX1 syntheta 66.8 36 0.0012 36.7 12.1 101 354-460 24-130 (590)
68 3hgu_A EHPF; phenazine, antibi 66.7 25 0.00084 35.4 10.1 98 189-289 89-214 (369)
69 3o83_A Peptide arylation enzym 65.5 25 0.00084 37.7 10.4 90 354-453 43-135 (544)
70 2d1s_A Luciferase, luciferin 4 60.1 26 0.00088 37.7 9.2 85 374-459 51-138 (548)
71 3l8c_A D-alanine--poly(phospho 59.9 30 0.001 36.7 9.7 90 354-453 17-109 (521)
72 3fce_A D-alanine--poly(phospho 58.4 31 0.0011 36.5 9.5 89 354-452 14-105 (512)
73 3tsy_A Fusion protein 4-coumar 57.8 34 0.0011 39.8 10.3 96 353-456 73-171 (979)
74 3ipl_A 2-succinylbenzoate--COA 55.8 33 0.0011 36.1 9.1 90 354-453 14-103 (501)
75 4dg8_A PA1221; ANL superfamily 51.0 60 0.002 35.4 10.4 89 354-452 40-131 (620)
76 3ite_A SIDN siderophore synthe 49.8 81 0.0028 33.7 11.1 97 354-453 33-134 (562)
77 3e7w_A D-alanine--poly(phospho 41.8 1.2E+02 0.004 31.9 10.7 98 188-289 140-243 (511)
78 3gqw_A Fatty acid AMP ligase; 40.4 91 0.0031 33.3 9.7 86 373-459 47-142 (576)
79 3rg2_A Enterobactin synthase c 38.9 78 0.0027 34.3 8.9 89 355-453 39-130 (617)
80 2vsq_A Surfactin synthetase su 32.9 1.1E+02 0.0036 36.9 9.4 92 354-455 477-571 (1304)
81 3nyq_A Malonyl-COA ligase; A/B 32.5 1.1E+02 0.0038 32.1 8.6 78 374-454 47-124 (505)
82 3vc3_A Beta-cyanoalnine syntha 31.9 1.2E+02 0.0042 30.1 8.3 70 219-288 71-141 (344)
83 4h1h_A LMO1638 protein; MCCF-l 31.8 88 0.003 30.9 7.1 70 230-299 9-97 (327)
84 4e4g_A Methylmalonate-semialde 29.3 1.7E+02 0.0058 31.0 9.2 75 399-481 165-249 (521)
85 3tbh_A O-acetyl serine sulfhyd 28.5 1.8E+02 0.0063 28.6 8.9 68 222-289 59-127 (334)
86 3tla_A MCCF; serine protease, 26.7 1.1E+02 0.0039 30.8 6.8 71 230-300 40-129 (371)
87 3ezx_A MMCP 1, monomethylamine 26.2 3.7E+02 0.013 24.4 11.5 90 398-490 93-194 (215)
88 4e5s_A MCCFLIKE protein (BA_56 25.3 2E+02 0.007 28.3 8.4 71 230-300 9-98 (331)
89 3ju8_A Succinylglutamic semial 25.2 2.1E+02 0.0073 29.9 9.0 65 398-462 141-215 (490)
90 1t90_A MMSDH, probable methylm 24.7 2.1E+02 0.0071 30.0 8.8 76 398-481 143-228 (486)
91 3sr3_A Microcin immunity prote 23.2 1.8E+02 0.0063 28.7 7.6 71 230-300 10-99 (336)
92 3prl_A NADP-dependent glyceral 21.9 2.3E+02 0.0079 29.8 8.5 75 399-481 155-240 (505)
93 1uxt_A Glyceraldehyde-3-phosph 21.2 3.2E+02 0.011 28.7 9.4 76 398-481 159-244 (501)
94 3ek1_A Aldehyde dehydrogenase; 21.2 2.5E+02 0.0086 29.5 8.6 75 399-481 171-256 (504)
95 3etf_A Putative succinate-semi 21.1 2.9E+02 0.0098 28.6 9.0 75 399-481 129-213 (462)
96 3r31_A BADH, betaine aldehyde 20.6 2.1E+02 0.0071 30.3 7.8 75 399-481 153-237 (517)
97 3ri6_A O-acetylhomoserine sulf 20.4 3.7E+02 0.013 27.4 9.7 58 230-289 118-176 (430)
98 2duw_A Putative COA-binding pr 20.4 1.5E+02 0.005 25.2 5.5 52 232-284 70-121 (145)
99 3i44_A Aldehyde dehydrogenase; 20.2 2.2E+02 0.0074 30.0 7.8 48 398-445 163-215 (497)
100 2o2p_A Formyltetrahydrofolate 20.1 2.7E+02 0.0091 29.5 8.5 75 399-481 181-266 (517)
No 1
>2vsq_A Surfactin synthetase subunit 3; ligase, peptidyl carrier protein, ligase phosphoprotein, TER module, phosphopantetheine; 2.60A {Bacillus subtilis}
Probab=100.00 E-value=2.7e-87 Score=815.92 Aligned_cols=577 Identities=16% Similarity=0.129 Sum_probs=466.0
Q ss_pred cCCCchhHHHHHHHHHHHhhhccCC-ChHHHHHHHHHhHhcCCCCCCCcchhHHHHHHhhccccCCCC---------Ccc
Q 006121 16 VGLKLEEAEEFDKILKQVISCSKGL-DAREIWRELVARKVLKPWHPHGLHQLVYYSVYNDWDASIKGP---------PLY 85 (660)
Q Consensus 16 ~~~~~~~~~~f~~~l~~~~~~~~~~-~hq~~Pf~~~lv~~l~~~r~~~~~~~plfqv~~~~~~~~~~~---------~~~ 85 (660)
+.++++++.+|.++|+++++...++ +||++||++ |++.++ +.|+||+||+++|.+... ...
T Consensus 304 lr~~~~~~~s~~~ll~~v~~~~~~a~~hq~~p~~~-i~~~l~--------~~~lf~~~~~~~~~~~~~~~~~~~~~~g~~ 374 (1304)
T 2vsq_A 304 RRVKLSEGITFNGLLKRLQEQSLQSEPHQYVPLYD-IQSQAD--------QPKLIDHIIVFENYPLQDAKNEESSENGFD 374 (1304)
T ss_dssp EEEECCTTCBHHHHHHHHHHHHHHHGGGTTSCHHH-HHHSSS--------CSSSCCCEEEECSSCHHHHSCCCHHHHSEE
T ss_pred EEecCCCCCcHHHHHHHHHHHHHHhhhcccCCHHH-HHHHhC--------CCcccceeEEEeecccccccccccccCCce
Confidence 3455567778999999999988877 999999999 999874 235699999998754211 010
Q ss_pred cCCC-hhhhcccchHHHHHHhCCcccccc-cCCCCccHHHHHHHHhhCHHHHHHHHHhhcccceeccceec--ccCCCCC
Q 006121 86 WFPS-LDQSKLTNLGNALEIHGPKLLGRA-YKDPITSFRLFQKFTVEHPEAYWEIALKEISVVFREAPKCI--LDRTDKS 161 (660)
Q Consensus 86 ~~~~-~~~~~~~dl~~~~~~~~~~~~~~~-y~~~~~~~~lf~~~ti~~~~~~~~~~l~~~~~~~~~~~~~~--l~~~~~~ 161 (660)
..+. ....++|||++.+.. ++++.+.+ |++ ++|++.+++++.++|.++|+++..+++.+..++ ++..+..
T Consensus 375 ~~~~~~~~~~~~dL~l~~~~-~~~l~~~~~y~~-----~lf~~~~i~~l~~~~~~lL~~l~~~p~~~~~~~~~l~~~e~~ 448 (1304)
T 2vsq_A 375 MVDVHVFEKSNYDLNLMASP-GDEMLIKLAYNE-----NVFDEAFILRLKSQLLTAIQQLIQNPDQPVSTINLVDDRERE 448 (1304)
T ss_dssp EEEEEECCCCCSSEEEEEEC-SSSCEEEEEEET-----TTSCHHHHHHHHHHHHHHHHHHHHSTTSBGGGCCCCCHHHHH
T ss_pred eEeeecccccccCeEEEEec-CCcEEEEEEECC-----ccCCHHHHHHHHHHHHHHHHHhccCccccccccCCCCHHHHH
Confidence 0000 023578898887643 56788888 999 999999999999999999999987777666553 3333322
Q ss_pred CCCCCcCCCCccchhhhccc--ccCcCCCCCCcEEEEEecCCCCCCCceeecHHHHHHHHHHHHHHHHhc-cCCCCEEEE
Q 006121 162 KHGGTWLPGSVLNIAECCLL--PSNHRRKEDNTVAIVWREDRCDESAVNLMTYKELREQVMLVANALDTM-FSKGDAIAI 238 (660)
Q Consensus 162 ~~~~~~~~~~~~~~~~~~l~--~~~~a~~~pd~~Av~~~~~~~~~~~~~~lTY~eL~~~a~~lA~~L~~~-v~~gd~V~i 238 (660)
..+..|+.+...... .+++ +..+++++||++|+++.++ ++||+||+++++++|++|++. +++|++|+|
T Consensus 449 ~~~~~~~~~~~~~~~-~~l~~~~~~~~~~~p~~~Av~~~~~--------~lTY~eL~~~a~~lA~~L~~~Gv~~g~~V~i 519 (1304)
T 2vsq_A 449 FLLTGLNPPAQAHET-KPLTYWFKEAVNANPDAPALTYSGQ--------TLSYRELDEEANRIARRLQKHGAGKGSVVAL 519 (1304)
T ss_dssp HHHTTTSCCCCCCCC-CCHHHHHHHHHHHCTTSEEEESSSC--------EEEHHHHHHHHHHHHHHHHHTTCCTTCEEEE
T ss_pred HHHHhcCCCCCCCCC-CCHHHHHHHHHHhCCCCeEEEECCe--------eEcHHHHHHHHHHHHHHHHhcCcCCcCEEEE
Confidence 234557655433221 2232 2346689999999999887 999999999999999999999 999999999
Q ss_pred EcCCCHHHHHHHHHHHHcCcEEEecCCCCCHHHHHHHHHhcCeeEEEeecceeecCccccchhhHhccCCCcEEEEcCCC
Q 006121 239 DMPMTVRAVIIYLAIILAGYVVVSIADSFAAREIATRLRVSKAKGIFTQDFILRGGRKFPLYSKVLGAAPLKAIVLPAIG 318 (660)
Q Consensus 239 ~~~~s~~~vva~lA~lkaGa~~vpl~p~~p~~~l~~~l~~~~~~~il~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~ 318 (660)
+++||+++++++|||+|+|++||||||.+|.+|+.+++++++++++|++.........++ .....+++..
T Consensus 520 ~~~~s~~~vv~~lailkaG~~~vpldp~~p~~rl~~il~~~~~~~vl~~~~~~~~~~~~~--------~~~~~~~~~~-- 589 (1304)
T 2vsq_A 520 YTKRSLELVIGILGVLKAGAAYLPVDPKLPEDRISYMLADSAAACLLTHQEMKEQAAELP--------YTGTTLFIDD-- 589 (1304)
T ss_dssp CCCSSHHHHHHHHHHHHTTCEEEECCTTSCHHHHHHHHHHHTCCEEEECSTTCTTSTTCC--------CCSEEEESSC--
T ss_pred EeCCCHHHHHHHHHHHHHCCEEEEECCCCHHHHHHHHHHHcCCCEEEECcchhhhhhccC--------CCCcEEEecc--
Confidence 999999999999999999999999999999999999999999999999875432111110 0011111110
Q ss_pred CCCCCCCCCCCcchhhhhccCCCCCCCCCCCCccCCCCCeEEEEecCCCCCCcceEEecchhhHHHHHHhhHhcCCCCCC
Q 006121 319 NDVGIPLREQDLSWKDFLSSVDYHPRPNYYSPVYNPVDAVVNILFSSGTTGEPKAIPWTQLSSIRCTAEGWAHIDLKVGD 398 (660)
Q Consensus 319 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~i~~TSGSTG~PKgV~~sh~~l~~~~~~~~~~~~~~~~~ 398 (660)
...... . ...+.....|+++|||+|||||||+||||+++|+++.+. .+....+++++++
T Consensus 590 -------------~~~~~~-~------~~~~~~~~~~~~~ayiiyTSGSTG~PKgV~~~h~~l~~~-~~~~~~~~~~~~d 648 (1304)
T 2vsq_A 590 -------------QTRFEE-Q------ASDPATAIDPNDPAYIMYTSGTTGKPKGNITTHANIQGL-VKHVDYMAFSDQD 648 (1304)
T ss_dssp -------------GGGGGS-C------SSCCCCCCCTTSEEEEEEECCSSSSCEEEEEEHHHHHHH-HSSCCSSCCCTTC
T ss_pred -------------cccccc-c------cCCCCCCCCCCCeEEEEeCCCCCCCCCEEEEehHHHHHH-HHHHHhcCCCCCC
Confidence 000000 0 011223456899999999999999999999999999877 5566778899999
Q ss_pred EEEEecCccccchhhHHHHhhhcCcEEEEecC--CCChhhHHHHHHHcCCeEEeecHHHHHHHHhcCCCCCCCccCccEE
Q 006121 399 VYCWPTNLGWVMGPVILFSSFLNGATLALYQG--SPLERSFGKFVQDAGVTVLGTVPSLVKAWRNTNCLEGLDWTKIRSF 476 (660)
Q Consensus 399 ~~l~~~~~~~~~~~~~~~~~l~~G~~lv~~~~--~~~~~~l~~~i~~~~vt~l~~~P~~l~~l~~~~~~~~~~l~~lr~v 476 (660)
+++++++++||.+.+++|.+|++|+++++.+. ..++..+.+.|++++||+++++|++++.|.+.. ...+++||.+
T Consensus 649 ~~l~~~~~~fd~~~~~~~~~l~~G~~l~~~~~~~~~~~~~l~~~i~~~~vt~~~~~p~~~~~l~~~~---~~~~~~lr~~ 725 (1304)
T 2vsq_A 649 TFLSVSNYAFDAFTFDFYASMLNAARLIIADEHTLLDTERLTDLILQENVNVMFATTALFNLLTDAG---EDWMKGLRCI 725 (1304)
T ss_dssp EEEECSCTTSTHHHHHHHHHHTTTCEEEECCGGGTTCHHHHHHHHHHHTCCEEEEEHHHHHHHHHHC---SHHHHTCSEE
T ss_pred EEEEECCccHHHHHHHHHHHHHcCCEEEECChhhcCCHHHHHHHHHHcCCcEEEccHHHHHHHHhhc---hhcCCCccEE
Confidence 99999999999999999999999999999874 358899999999999999999999999998653 2236799999
Q ss_pred EeecCCCChhhHHHHHhhCCCCceeccccccccccccccCCcC---CCCcccccCcCCCCceEEEEcCCCCcCCCCCCce
Q 006121 477 ASTGETSNVDDDLWLSSKAWYNAIIESCGGTELSSAYIQGSLL---QPQAFGAFSTATMTAGLVILDECGVPYPDDQPCV 553 (660)
Q Consensus 477 ~~gGe~l~~~~~~~~~~~~~~~~l~n~YG~TE~~~~~~~~~~~---~~~~~~~iG~p~~~~~~~vld~~~~~vp~G~~gi 553 (660)
++|||++++++.+++.+.+++++++|.||+||++++++..... ......+||+|++|++++|+|++++++|.|++
T Consensus 726 ~~gGe~l~~~~~~~~~~~~~~~~l~n~YG~TE~~~~~~~~~~~~~~~~~~~~~iG~p~~~~~~~i~d~~~~~~p~G~~-- 803 (1304)
T 2vsq_A 726 LFGGERASVPHVRKALRIMGPGKLINCYGPTEGTVFATAHVVHDLPDSISSLPIGKPISNASVYILNEQSQLQPFGAV-- 803 (1304)
T ss_dssp EEESSCCCHHHHHHHHHHHCTTCEEEEECCGGGSSCSEEEECCCCCSSCSSCCCBEECTTEEEEEECTTSCBCCTTCC--
T ss_pred EEecCCCCHHHHHHHHHhCCCCEEEEeEChhHHhHHheeeeccCccccCCCCCCceeeCCCEEEEECCCcCCCCCCCc--
Confidence 9999999999999988887778999999999999765543221 22345689999999999999999999999997
Q ss_pred eEEEE-----eccccCCcccccCcccccccccccccCCCceeEeeCceEEEecCceEEEEeccCCccccCceeecchHHH
Q 006121 554 GEVGL-----FPLYLGASDRLLNADHEEVYFRGMPMYKGMCLRRHGDIIKRTVGGYIIVQGRADDTMNLGGIKALLLPLT 628 (660)
Q Consensus 554 Gel~v-----~~~y~~~~~~~~~~~~t~~~f~~~p~~~~~r~y~TGDl~~~~~dG~l~~~GR~dd~iki~G~rv~~~eIE 628 (660)
||||| +.||++ ++++|+++|+.+|+.+|+|||||||+|||++||+|+|+||+|||||+||+||+|+|||
T Consensus 804 GEl~i~G~~v~~GY~~------~p~~T~~~f~~~p~~~g~~~yrTGDl~~~~~dG~l~~~GR~d~qvki~G~rie~~eIE 877 (1304)
T 2vsq_A 804 GELCISGMGVSKGYVN------RADLTKEKFIENPFKPGETLYRTGDLARWLPDGTIEYAGRIDDQVKIRGHRIELEEIE 877 (1304)
T ss_dssp EEEEEEETTCCCCBTT------CHHHHHHHEEECTTSTTCEEEEEEEEEEECTTSCEEEEEEGGGEEEETTEEEEHHHHH
T ss_pred eEEEEeccccCccccC------CcccchhhhccCCCCCCCeeEecCCeEEEcCCCeEEEEcCCCCEEEECCEeeCHHHHH
Confidence 99999 456666 8889999999999988999999999999999999999999999999999999999999
Q ss_pred HhhcCCCCceeeEEEEEeecC-cceeeeecc
Q 006121 629 FLSSPRSSFKCLHIYAWLYFH-KLELIFYFS 658 (660)
Q Consensus 629 ~~L~~~~~V~~a~vv~~~~~~-~~~l~a~~~ 658 (660)
++|.+||+|++|+|++..+.. +..|++|+.
T Consensus 878 ~~l~~~p~V~~a~V~~~~~~~~~~~l~a~vv 908 (1304)
T 2vsq_A 878 KQLQEYPGVKDAVVVADRHESGDASINAYLV 908 (1304)
T ss_dssp HHHHHSSSCCEEEEEEECCSSSCCEEEEEEE
T ss_pred HHHHhCCCCceEEEEEEecCCCCEEEEEEEe
Confidence 999999999999999876544 567999875
No 2
>1ry2_A Acetyl-coenzyme A synthetase 1, acyl-activating enzyme 1; AMP forming, related to firefly luciferase, ligase; HET: AMP; 2.30A {Saccharomyces cerevisiae} SCOP: e.23.1.1
Probab=100.00 E-value=5.6e-76 Score=668.87 Aligned_cols=526 Identities=21% Similarity=0.297 Sum_probs=419.9
Q ss_pred cCCCCccHHHHHHHHhhCHHHHHHHHHhhcccceeccceecccCC---C-CCCCCCCcCCCCccchhhhcccccCcCCCC
Q 006121 114 YKDPITSFRLFQKFTVEHPEAYWEIALKEISVVFREAPKCILDRT---D-KSKHGGTWLPGSVLNIAECCLLPSNHRRKE 189 (660)
Q Consensus 114 y~~~~~~~~lf~~~ti~~~~~~~~~~l~~~~~~~~~~~~~~l~~~---~-~~~~~~~~~~~~~~~~~~~~l~~~~~a~~~ 189 (660)
+...+.+|..+.+++++++..||..+.+.. +.|.+++.++++.. . ...+..+|+.++.+|.+.+++++++ +++
T Consensus 19 ~~~~~~~y~~~~~~s~~~~~~fw~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~wf~~~~~n~~~~~l~~~a--~~~ 95 (663)
T 1ry2_A 19 SHMGLQDYQRLHKESIEDPAKFFGSKATQF-LNWSKPFDKVFIPDPKTGRPSFQNNAWFLNGQLNACYNCVDRHA--LKT 95 (663)
T ss_dssp -----CHHHHHHHHHHHCHHHHHHHHHHHH-CCEEECCSCSBCBCSSSCSBCSTTCCBSTTCEECHHHHHTHHHH--TTC
T ss_pred cCCChhhHHHHHHHHhcCHHHHHHHHHhhc-CeeecCCceeecCccccccCCCCCCCcCCCCCccHHHHHHHHHh--ccC
Confidence 444456678888999999999999998862 47899999988764 2 2233368999999999999988765 679
Q ss_pred CCcEEEEEecCCCCCCCceeecHHHHHHHHHHHHHHHH-hc-cCCCCEEEEEcCCCHHHHHHHHHHHHcCcEEEecCCCC
Q 006121 190 DNTVAIVWREDRCDESAVNLMTYKELREQVMLVANALD-TM-FSKGDAIAIDMPMTVRAVIIYLAIILAGYVVVSIADSF 267 (660)
Q Consensus 190 pd~~Av~~~~~~~~~~~~~~lTY~eL~~~a~~lA~~L~-~~-v~~gd~V~i~~~~s~~~vva~lA~lkaGa~~vpl~p~~ 267 (660)
|+++|+++.+. +.+..+++||+||+++++++|++|+ ++ |++||+|+|+++|++++++++|||+++|++++|++|.+
T Consensus 96 pd~~Al~~~~~--~~~~~~~~TY~eL~~~v~~lA~~L~~~~Gv~~Gd~V~i~~~~~~e~v~a~lA~~~~Gav~vpl~~~~ 173 (663)
T 1ry2_A 96 PNKKAIIFEGD--EPGQGYSITYKELLEEVCQVAQVLTYSMGVRKGDTVAVYMPMVPEAIITLLAISRIGAIHSVVFAGF 173 (663)
T ss_dssp TTSEEEEEECS--STTCCEEEEHHHHHHHHHHHHHHHHHTSCCCTTCEEEECCCSSHHHHHHHHHHHHTTCEEEECCTTS
T ss_pred CCceEEEEEcC--CCCceEEEEHHHHHHHHHHHHHHHHHhcCCCCCCEEEEEcCCCHHHHHHHHHHHHcCCEEEeeCCCC
Confidence 99999998643 1234468999999999999999999 88 99999999999999999999999999999999999999
Q ss_pred CHHHHHHHHHhcCeeEEEeecceeecCccccchhhHhcc---CCC--cEEEEcCCCC-CCCCCCCCCCcchhhhhccCCC
Q 006121 268 AAREIATRLRVSKAKGIFTQDFILRGGRKFPLYSKVLGA---APL--KAIVLPAIGN-DVGIPLREQDLSWKDFLSSVDY 341 (660)
Q Consensus 268 p~~~l~~~l~~~~~~~il~~~~~~~~~~~~~~~~~~~~~---~~~--~~~~v~~~~~-~~~~~~~~~~~~~~~~~~~~~~ 341 (660)
+.+++.++++++++++||+++...+.++.++....+.+. .+. .++++..... ... .......+|+++......
T Consensus 174 ~~~~l~~~l~~~~~~~li~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vi~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~ 252 (663)
T 1ry2_A 174 SSNSLRDRINDGDSKVVITTDESNRGGKVIETKRIVDDALRETPGVRHVLVYRKTNNPSVA-FHAPRDLDWATEKKKYKT 252 (663)
T ss_dssp CHHHHHHHHHHHTCSEEEEESBCCBTTBCCBHHHHHHHHTTSCTTCCEEEEECSSCCSSCC-CCSSSEEEHHHHHTTSCS
T ss_pred CHHHHHHHHHhcCCeEEEEccccccCCcccchHHHHHHHHHhCCCCceEEEEecCCCCccc-cCCCccccHHHHHhhcCC
Confidence 999999999999999999998877666655544333322 222 3444433221 100 011234567776654321
Q ss_pred CCCCCCCCCccCCCCCeEEEEecCCCCCCcceEEecchhhHHHHH-HhhHhcCCCCCCEEEEecCccccchh-hHHHHhh
Q 006121 342 HPRPNYYSPVYNPVDAVVNILFSSGTTGEPKAIPWTQLSSIRCTA-EGWAHIDLKVGDVYCWPTNLGWVMGP-VILFSSF 419 (660)
Q Consensus 342 ~~~~~~~~~~~~~~~~~a~i~~TSGSTG~PKgV~~sh~~l~~~~~-~~~~~~~~~~~~~~l~~~~~~~~~~~-~~~~~~l 419 (660)
..+.....+++++||+|||||||+||||+++|++++.... .....++++++|++++.++++|+.+. +.++.+|
T Consensus 253 -----~~~~~~~~~~d~a~ilyTSGTTG~PKgV~~sh~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~g~~~~~~~~L 327 (663)
T 1ry2_A 253 -----YYPCTPVDSEDPLFLLYTSGSTGAPKGVQHSTAGYLLGALLTMRYTFDTHQEDVFFTAGDIGWITGHTYVVYGPL 327 (663)
T ss_dssp -----CCCCCCEETTSCCEEEEECCSSSSCEEEEECSHHHHHHHHHHHHHHSCCCSSCEEEECSCTTSHHHHHHTTHHHH
T ss_pred -----CCCccccCCCCceEEEeccCCCCCCceEEEchhHHHHHHHHHHHHhcCCCCCcEEEEcCCcHHhhhhHHHHHHHH
Confidence 1223345679999999999999999999999999876654 34456889999999999999999998 7789999
Q ss_pred hcCcEEEEecCC---CChhhHHHHHHHcCCeEEeecHHHHHHHHhcCC--CCCCCccCccEEEeecCCCChhhHHHHHhh
Q 006121 420 LNGATLALYQGS---PLERSFGKFVQDAGVTVLGTVPSLVKAWRNTNC--LEGLDWTKIRSFASTGETSNVDDDLWLSSK 494 (660)
Q Consensus 420 ~~G~~lv~~~~~---~~~~~l~~~i~~~~vt~l~~~P~~l~~l~~~~~--~~~~~l~~lr~v~~gGe~l~~~~~~~~~~~ 494 (660)
++|++++++++. +++..+++.|++++||+++++|++++.|.+... ....++++||.+++|||++++++.+++.+.
T Consensus 328 ~~G~t~v~~~~~~~~~~~~~~~~~i~~~~vt~~~~~Ps~~~~l~~~~~~~~~~~~l~sLr~i~~gGe~l~~~~~~~~~~~ 407 (663)
T 1ry2_A 328 LYGCATLVFEGTPAYPNYSRYWDIIDEHKVTQFYVAPTALRLLKRAGDSYIENHSLKSLRCLGSVGEPIAAEVWEWYSEK 407 (663)
T ss_dssp HHTSEEEEECSCTTSSCTTHHHHHHHHTTCSEEEECHHHHHHHTTSCTTSSSSCCCTTCCEEEECSSCCCHHHHHHHHHT
T ss_pred HhCCEEEEECCCCCCCCHHHHHHHHHHcCCCEEEecHHHHHHHHhcCccccccCCcCceEEEEEEcCCCCHHHHHHHHHH
Confidence 999999999753 478899999999999999999999999987654 345678999999999999999999999987
Q ss_pred CC--CCceeccccccccccccccCCc--CCCCcccccCcCCCCceEEEEcC-CCCcCCC-CCCceeEEEE-e--ccccCC
Q 006121 495 AW--YNAIIESCGGTELSSAYIQGSL--LQPQAFGAFSTATMTAGLVILDE-CGVPYPD-DQPCVGEVGL-F--PLYLGA 565 (660)
Q Consensus 495 ~~--~~~l~n~YG~TE~~~~~~~~~~--~~~~~~~~iG~p~~~~~~~vld~-~~~~vp~-G~~giGel~v-~--~~y~~~ 565 (660)
++ .++++|.||+||++++++.... ..+.+.+++|+|++|++++|+|+ +|+++|. |+. |||+| + |++..+
T Consensus 408 ~g~~~~~i~~~YG~TE~~~~~~~~~~~~~~~~~~gs~G~p~~g~~v~i~d~~~g~~v~~~g~~--Gel~i~g~~p~~~~g 485 (663)
T 1ry2_A 408 IGKNEIPIVDTYWQTESGSHLVTPLAGGVTPMKPGSASFPFFGIDAVVLDPNTGEELNTSHAE--GVLAVKAAWPSFART 485 (663)
T ss_dssp TSCSSSCEEECBCCTTTCSCSEECCTTTCCCCCTTCCCEECTTCCEEEECSSSTTCEECSSCE--EEEEESSCCTTSCCE
T ss_pred hCCCCceEEEeECCccccCeeeccCCCCCcccCCCccccCcCCCeEEEEcCCCCCcCCCCCcc--eEEEEecCCCchhcc
Confidence 75 3789999999999875554432 23456789999999999999998 9999998 885 99999 3 233321
Q ss_pred cccccCcccccccccccccCCCceeEeeCceEEEecCceEEEEeccCCccccCceeecchHHHHhhcCCCCceeeEEEEE
Q 006121 566 SDRLLNADHEEVYFRGMPMYKGMCLRRHGDIIKRTVGGYIIVQGRADDTMNLGGIKALLLPLTFLSSPRSSFKCLHIYAW 645 (660)
Q Consensus 566 ~~~~~~~~~t~~~f~~~p~~~~~r~y~TGDl~~~~~dG~l~~~GR~dd~iki~G~rv~~~eIE~~L~~~~~V~~a~vv~~ 645 (660)
|+.+++.+.+.|... ..+||+|||+|++|+||+|+|+||+|||||++|+||+|.|||++|.+||+|++|+|+..
T Consensus 486 --y~~~~~~~~~~~~~~----~~g~y~TGDlg~~d~dG~l~i~GR~dd~Ik~~G~rI~~~eIE~~l~~~p~V~ea~Vvg~ 559 (663)
T 1ry2_A 486 --IWKNHDRYLDTYLNP----YPGYYFTGDGAAKDKDGYIWILGRVDDVVNVSGHRLSTAEIEAAIIEDPIVAECAVVGF 559 (663)
T ss_dssp --ETTCHHHHHHHHTSS----STTSEEEEEEEEECTTCCEEECSCTTSCBCSSSCCBCHHHHHHHHHSSTTEEEEEEECC
T ss_pred --cccChHHHHHhhhcC----CCCEEEcCCEEEEcCCCCEEEEeecCCEEEECCEEcCHHHHHHHHHhCCCcceEEEEEE
Confidence 222555565554321 12399999999999999999999999999999999999999999999999999999987
Q ss_pred eec-Ccceeeeecc
Q 006121 646 LYF-HKLELIFYFS 658 (660)
Q Consensus 646 ~~~-~~~~l~a~~~ 658 (660)
.+. .+..+++|+.
T Consensus 560 ~~~~~g~~~~a~Vv 573 (663)
T 1ry2_A 560 NDDLTGQAVAAFVV 573 (663)
T ss_dssp CCCTTSCCCEEEEE
T ss_pred ecCCCCeEEEEEEE
Confidence 654 3556888874
No 3
>1pg4_A Acetyl-COA synthetase; AMP-forming, adenylate-forming, thioester-forming, ligase; HET: COA PRX; 1.75A {Salmonella enterica} SCOP: e.23.1.1 PDB: 1pg3_A* 2p2f_A* 2p2b_A* 2p2q_A* 2p2j_A* 2p20_A* 2p2m_A*
Probab=100.00 E-value=4.4e-76 Score=669.38 Aligned_cols=518 Identities=23% Similarity=0.336 Sum_probs=416.1
Q ss_pred cHHHHHHHHhhCHHHHHHHHHhhcccceeccceecccCCCC-CCCCCCcCCCCccchhhhcccccCcCCCCCCcEEEEEe
Q 006121 120 SFRLFQKFTVEHPEAYWEIALKEISVVFREAPKCILDRTDK-SKHGGTWLPGSVLNIAECCLLPSNHRRKEDNTVAIVWR 198 (660)
Q Consensus 120 ~~~lf~~~ti~~~~~~~~~~l~~~~~~~~~~~~~~l~~~~~-~~~~~~~~~~~~~~~~~~~l~~~~~a~~~pd~~Av~~~ 198 (660)
+|..+.+.+++++..+|..+++. ..|.+++.+++..... ..+..+|+.++..|...+++++++ +++||++|+++.
T Consensus 23 ~y~~l~~~~~~~p~~~w~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~wf~~~~~n~~~~~l~~~a--~~~pd~~Al~~~ 98 (652)
T 1pg4_A 23 QYETKYKQSINDPDTFWGEQGKI--LDWITPYQKVKNTSFAPGNVSIKWYEDGTLNLAANCLDRHL--QENGDRTAIIWE 98 (652)
T ss_dssp HHHHHHHHHHHCHHHHHHHHGGG--SCCSBCCSCCEEEECCTTCCEEEESTTCEECHHHHHTGGGH--HHHTTSEEEEEE
T ss_pred HHHHHHHHHhcCHHHHHHHHHhh--CceecCCcccccCccccCCCCCEECCCCChhHHHHHHHHHh--ccCCCceEEEEE
Confidence 35677889999999999999885 5678888887754321 123558999999999988887765 678999999985
Q ss_pred cCCCCCCCceeecHHHHHHHHHHHHHHHHhc-cCCCCEEEEEcCCCHHHHHHHHHHHHcCcEEEecCCCCCHHHHHHHHH
Q 006121 199 EDRCDESAVNLMTYKELREQVMLVANALDTM-FSKGDAIAIDMPMTVRAVIIYLAIILAGYVVVSIADSFAAREIATRLR 277 (660)
Q Consensus 199 ~~~~~~~~~~~lTY~eL~~~a~~lA~~L~~~-v~~gd~V~i~~~~s~~~vva~lA~lkaGa~~vpl~p~~p~~~l~~~l~ 277 (660)
+. +.+..+++||+||+++++++|++|+++ +++||+|+|+++|++++++++|||+|+|++++|++|.++++++.++++
T Consensus 99 ~~--~~~~~~~lTY~eL~~~v~~lA~~L~~~Gv~~Gd~V~i~~~~~~e~vva~lA~~~~Gav~vpl~~~~~~~~l~~~l~ 176 (652)
T 1pg4_A 99 GD--DTSQSKHISYRELHRDVCRFANTLLDLGIKKGDVVAIYMPMVPEAAVAMLACARIGAVHSVIFGGFSPEAVAGCII 176 (652)
T ss_dssp CS--STTCEEEEEHHHHHHHHHHHHHHHHHHTCCTTCEEEEECCSSHHHHHHHHHHHHHTCEEEECCTTSCHHHHHHHHH
T ss_pred cC--CCCceeEEeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEeCCCHHHHHHHHHHHHcCcEEEecCCCCCHHHHHHHHH
Confidence 43 123446899999999999999999999 999999999999999999999999999999999999999999999999
Q ss_pred hcCeeEEEeecceeecCccccchhhHhc---cCC----CcEEEEcCCCCCCCCCCCCCCcchhhhhccCCCCCCCCCCCC
Q 006121 278 VSKAKGIFTQDFILRGGRKFPLYSKVLG---AAP----LKAIVLPAIGNDVGIPLREQDLSWKDFLSSVDYHPRPNYYSP 350 (660)
Q Consensus 278 ~~~~~~il~~~~~~~~~~~~~~~~~~~~---~~~----~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 350 (660)
++++++||+++...+.++.++....+.. ..+ ..++++...+..... ......+|++++..... ....
T Consensus 177 ~~~~~~li~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vi~~~~~~~~~~~-~~~~~~~~~~~~~~~~~-----~~~~ 250 (652)
T 1pg4_A 177 DSSSRLVITADEGVRAGRSIPLKKNVDDALKNPNVTSVEHVIVLKRTGSDIDW-QEGRDLWWRDLIEKASP-----EHQP 250 (652)
T ss_dssp HHTCSEEEEESEEEETTEEEESHHHHHHHHTSTTCCSCCEEEEECSSCCCCCC-CBTTEEEHHHHHTTSCS-----CCCC
T ss_pred hcCCCEEEEcCccccCCcccchHHHHHHHHhcCCcCCCCEEEEEeCCCCcccc-cCCCceeHHHHHhhcCC-----CCCc
Confidence 9999999999987766665554433322 211 234444332211110 11234567777654322 1222
Q ss_pred ccCCCCCeEEEEecCCCCCCcceEEecchhhHHHHH-HhhHhcCCCCCCEEEEecCccccchh-hHHHHhhhcCcEEEEe
Q 006121 351 VYNPVDAVVNILFSSGTTGEPKAIPWTQLSSIRCTA-EGWAHIDLKVGDVYCWPTNLGWVMGP-VILFSSFLNGATLALY 428 (660)
Q Consensus 351 ~~~~~~~~a~i~~TSGSTG~PKgV~~sh~~l~~~~~-~~~~~~~~~~~~~~l~~~~~~~~~~~-~~~~~~l~~G~~lv~~ 428 (660)
....+++++||+|||||||+||||+++|++++.... .....++++++|++++.+|++|+.+. +.++.+|++|++++++
T Consensus 251 ~~~~~~d~a~ilyTSGTTG~PKgV~~sh~~~~~~~~~~~~~~~~~~~~d~~l~~~~~~~~~g~~~~~~~~L~~G~t~vl~ 330 (652)
T 1pg4_A 251 EAMNAEDPLFILYTSGSTGKPKGVLHTTGGYLVYAATTFKYVFDYHPGDIYWCTADVGWVTGHSYLLYGPLACGATTLMF 330 (652)
T ss_dssp CCEETTSEEEEEEECCSSSSCEEEEEESHHHHHHHHHHHHHHTTCCTTCEEEECSCTTSHHHHHHTTHHHHHTTCEEEEE
T ss_pred cccCCCCCEEEEeccCCCCCCceEEECchHHHHHHHHHHHHhcCCCCCCEEEEccCCeeeechHHHHHHHHHcCceEEEE
Confidence 345679999999999999999999999999876654 44556889999999999999999998 7789999999999999
Q ss_pred cCC---CChhhHHHHHHHcCCeEEeecHHHHHHHHhcCC--CCCCCccCccEEEeecCCCChhhHHHHHhhCC--CCcee
Q 006121 429 QGS---PLERSFGKFVQDAGVTVLGTVPSLVKAWRNTNC--LEGLDWTKIRSFASTGETSNVDDDLWLSSKAW--YNAII 501 (660)
Q Consensus 429 ~~~---~~~~~l~~~i~~~~vt~l~~~P~~l~~l~~~~~--~~~~~l~~lr~v~~gGe~l~~~~~~~~~~~~~--~~~l~ 501 (660)
++. +++..+++.|++++||+++++|++++.|++... ....++++||.+++|||++++++.+++.+.++ .++++
T Consensus 331 ~~~~~~~~~~~~~~~i~~~~vt~~~~~P~~~~~l~~~~~~~~~~~~l~sLr~i~~gGe~l~~~~~~~~~~~~g~~~~~i~ 410 (652)
T 1pg4_A 331 EGVPNWPTPARMCQVVDKHQVNILYTAPTAIRALMAEGDKAIEGTDRSSLRILGSVGEPINPEAWEWYWKKIGKEKCPVV 410 (652)
T ss_dssp CSCTTSSSTTHHHHHHHHHTCSEEEECHHHHHHHHTTGGGGTTTCCCTTCCEEEEESSCCCHHHHHHHHHHTTTTCSCEE
T ss_pred CCCCCCCCHHHHHHHHHHhCCeEEEeCHHHHHHHHhcCccccccCCcCceEEEEEecCCCCHHHHHHHHHHhCCCCCcEE
Confidence 753 478999999999999999999999999987643 34467899999999999999999999988765 37899
Q ss_pred ccccccccccccccCCc-CCCCcccccCcCCCCceEEEEcCCCCcCCCCCCceeEEEE-e--ccccCCccccc-Cccccc
Q 006121 502 ESCGGTELSSAYIQGSL-LQPQAFGAFSTATMTAGLVILDECGVPYPDDQPCVGEVGL-F--PLYLGASDRLL-NADHEE 576 (660)
Q Consensus 502 n~YG~TE~~~~~~~~~~-~~~~~~~~iG~p~~~~~~~vld~~~~~vp~G~~giGel~v-~--~~y~~~~~~~~-~~~~t~ 576 (660)
|.||+||++++++.... ..+...+++|+|++|++++|+|++|+++|.|+. |||+| + |+... +|+ +++.+.
T Consensus 411 ~~YG~TE~~~~~~~~~~~~~~~~~~s~G~p~~g~~v~i~d~~g~~v~~g~~--GEl~i~g~~p~~~~---gY~~~~e~~~ 485 (652)
T 1pg4_A 411 DTWWQTETGGFMITPLPGAIELKAGSATRPFFGVQPALVDNEGHPQEGATE--GNLVITDSWPGQAR---TLFGDHERFE 485 (652)
T ss_dssp EEBCCGGGSSCSBCCCTTTCCBCTTCCBSBCTTCCEEEECTTCCBCCSSEE--EEEEECSCCTTCCC---EETTCHHHHH
T ss_pred ccccCcccccceecCCCCCcCccCCccccCcCCCeEEEECCCCCCcCCCce--EEEEEccCCCchhh---hhcCCHHHHH
Confidence 99999999975554332 234566899999999999999999999999986 99999 3 23322 233 455554
Q ss_pred ccccccccCCCceeEeeCceEEEecCceEEEEeccCCccccCceeecchHHHHhhcCCCCceeeEEEEEeec-Ccceeee
Q 006121 577 VYFRGMPMYKGMCLRRHGDIIKRTVGGYIIVQGRADDTMNLGGIKALLLPLTFLSSPRSSFKCLHIYAWLYF-HKLELIF 655 (660)
Q Consensus 577 ~~f~~~p~~~~~r~y~TGDl~~~~~dG~l~~~GR~dd~iki~G~rv~~~eIE~~L~~~~~V~~a~vv~~~~~-~~~~l~a 655 (660)
+.|.. ...+||+|||+|++|+||+|+|+||+|||||++|+||+|.|||++|.+||+|++|+|+...+. .+..+++
T Consensus 486 ~~~~~----~~~g~y~TGDlg~~d~dG~l~i~GR~dd~Ik~~G~rI~~~eIE~~l~~~p~V~ea~Vvg~~~~~~g~~l~a 561 (652)
T 1pg4_A 486 QTYFS----TFKNMYFSGDGARRDEDGYYWITGRVDDVLNVSGHRLGTAEIESALVAHPKIAEAAVVGIPHAIKGQAIYA 561 (652)
T ss_dssp HHHHS----SSTTSEEEEEEEEECTTSCEEEEEESSSEEEETTEEEEHHHHHHHHHHSTTEEEEEEEEEEETTTEEEEEE
T ss_pred hhhhh----cCCCEEECCcEEEEcCCCcEEEEecCCCEEEECCEEECHHHHHHHHHhCCCcceEEEEEEEcCCCCeEEEE
Confidence 44422 123399999999999999999999999999999999999999999999999999999987765 4567888
Q ss_pred ecc
Q 006121 656 YFS 658 (660)
Q Consensus 656 ~~~ 658 (660)
|+.
T Consensus 562 ~Vv 564 (652)
T 1pg4_A 562 YVT 564 (652)
T ss_dssp EEE
T ss_pred EEE
Confidence 875
No 4
>4dg8_A PA1221; ANL superfamily, adenylation domain, peptidyl carrier protei ribosomal peptide synthetase, NRPS, valine adenylation, LIG; HET: AMP; 2.15A {Pseudomonas aeruginosa} PDB: 4dg9_A*
Probab=100.00 E-value=6.2e-75 Score=654.73 Aligned_cols=417 Identities=18% Similarity=0.155 Sum_probs=355.4
Q ss_pred cCCCCCCcEEEEEecCCCCCCCceeecHHHHHHHHHHHHHHHHhc-cCCCCEEEEEcCCCHHHHHHHHHHHHcCcEEEec
Q 006121 185 HRRKEDNTVAIVWREDRCDESAVNLMTYKELREQVMLVANALDTM-FSKGDAIAIDMPMTVRAVIIYLAIILAGYVVVSI 263 (660)
Q Consensus 185 ~a~~~pd~~Av~~~~~~~~~~~~~~lTY~eL~~~a~~lA~~L~~~-v~~gd~V~i~~~~s~~~vva~lA~lkaGa~~vpl 263 (660)
+|+++||++|+++.++ ++||+||+++++++|++|++. +++||+|+|+++||+++++++|||+|+|++||||
T Consensus 36 ~a~~~Pd~~Av~~~~~--------~lTY~eL~~~a~~lA~~L~~~Gv~~g~~V~i~~~~s~~~vva~lailkaGa~~vpl 107 (620)
T 4dg8_A 36 MAALHPHREAIRDRFG--------SVDYRQLLDSAEQLSDYLLEHYPQPGVCLGVYGEYSRESITCLLAILLSGHHYLYI 107 (620)
T ss_dssp HHHHCTTSEEEEETTE--------EEEHHHHHHHHHHHHHHHHHHCCSSCCEEEEESSSCHHHHHHHHHHHHTTCEEEEC
T ss_pred HHHhCCCCeEEEcCCC--------cCcHHHHHHHHHHHHHHHHHcCCCCCCEEEEEeCCCHHHHHHHHHHHHhCCEEEee
Confidence 5689999999999887 999999999999999999999 9999999999999999999999999999999999
Q ss_pred CCCCCHHHHHHHHHhcCeeEEEeecceeecCccccchhhHhccCCCcEEEEcCCCCCCCCCCCCCCcchhhhhccCCCCC
Q 006121 264 ADSFAAREIATRLRVSKAKGIFTQDFILRGGRKFPLYSKVLGAAPLKAIVLPAIGNDVGIPLREQDLSWKDFLSSVDYHP 343 (660)
Q Consensus 264 ~p~~p~~~l~~~l~~~~~~~il~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 343 (660)
||.+|.+|+.++++++++++|++++......... ... .+.....
T Consensus 108 d~~~p~~~l~~il~~~~~~~vl~~~~~~~~~~~~------------~~~------------------~~~~~~~------ 151 (620)
T 4dg8_A 108 DLKQPAAWNAELCRQVDCRLILDCSTTPTPANGL------------PCV------------------PVRHLPA------ 151 (620)
T ss_dssp CTTSCHHHHHHHHHHHTEEEEEECCSSCCCCTTS------------CEE------------------EGGGCCC------
T ss_pred CccChHHHHHHHHHhCCCcEEEecCcccccccCC------------cee------------------eeccCCc------
Confidence 9999999999999999999999765421100000 000 0111000
Q ss_pred CCCCCCCccCCCCCeEEEEecCCCCCCcceEEecchhhHHHHHHhhHhcCCCCCCEEEEecCccccchhhHHHHhhhcCc
Q 006121 344 RPNYYSPVYNPVDAVVNILFSSGTTGEPKAIPWTQLSSIRCTAEGWAHIDLKVGDVYCWPTNLGWVMGPVILFSSFLNGA 423 (660)
Q Consensus 344 ~~~~~~~~~~~~~~~a~i~~TSGSTG~PKgV~~sh~~l~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~l~~G~ 423 (660)
.+.........++++|||+|||||||+||||+++|+++.+.+.+ ...+++++++++++.+|++|+.+++++|.+|+.|+
T Consensus 152 ~~~~~~~~~~~~~d~a~iiyTSGSTG~PKgV~~th~~l~~~~~~-~~~~~~~~~d~~l~~~p~~~~~~~~~~~~~l~~G~ 230 (620)
T 4dg8_A 152 APASVARPCFAADQIAYINFSSGTTGRPKAIACTHAGITRLCLG-QSFLAFAPQMRFLVNSPLSFDAATLEIWGALLNGG 230 (620)
T ss_dssp CCCCSSCCCCCTTSEEEEEEEBSSSSSCEEEEEEHHHHHHHHSS-CGGGTTCTTCEEEECSCTTSTHHHHHHHHHHTTTC
T ss_pred CCccccCCCCCCCCeEEEEECCCccccCeEEEEchHHHHHHHHH-HHhhCCCCCCEEEEECccCHHHHHHHHHHHHhcCC
Confidence 01111223346899999999999999999999999999887765 56678999999999999999999999999999999
Q ss_pred EEEEec-CCCChhhHHHHHHHcCCeEEeecHHHHHHHHhcCCCCCCCccCccEEEeecCCCChhhHHHHHhhCCCCceec
Q 006121 424 TLALYQ-GSPLERSFGKFVQDAGVTVLGTVPSLVKAWRNTNCLEGLDWTKIRSFASTGETSNVDDDLWLSSKAWYNAIIE 502 (660)
Q Consensus 424 ~lv~~~-~~~~~~~l~~~i~~~~vt~l~~~P~~l~~l~~~~~~~~~~l~~lr~v~~gGe~l~~~~~~~~~~~~~~~~l~n 502 (660)
++++.+ ...++..++++|+++++|+++++|++++.|++.. ...+++||.+++|||+++++..+++.+.+++++++|
T Consensus 231 ~~v~~~~~~~~~~~~~~~i~~~~vt~~~~~Ps~~~~l~~~~---~~~l~~lr~v~~gGe~l~~~~~~~~~~~~~~~~l~n 307 (620)
T 4dg8_A 231 CCVLNDLGPLDPGVLRQLIGERGADSAWLTASLFNTLVDLD---PDCLGGLRQLLTGGDILSVPHVRRALLRHPRLHLVN 307 (620)
T ss_dssp EEEECCSSSCCHHHHHHHHHTTCCCEEEEEHHHHHHHHHHC---GGGGTTCSEEEEESSCCCHHHHHHHHHHCTTCEEEE
T ss_pred EEEeCccccCCHHHHHHHHHHhCCcEEEccHHHHHHHHhcC---hhhCCCccEEEEEeCcCCHHHHHHHHHhCCCeEEEe
Confidence 999985 3568999999999999999999999999998753 345789999999999999999888888888899999
Q ss_pred cccccccccccccCCc---CCCCcccccCcCCCCceEEEEcCCCCc-CCCCCCceeEEEE-----eccccCCcccccCcc
Q 006121 503 SCGGTELSSAYIQGSL---LQPQAFGAFSTATMTAGLVILDECGVP-YPDDQPCVGEVGL-----FPLYLGASDRLLNAD 573 (660)
Q Consensus 503 ~YG~TE~~~~~~~~~~---~~~~~~~~iG~p~~~~~~~vld~~~~~-vp~G~~giGel~v-----~~~y~~~~~~~~~~~ 573 (660)
.||+||++++++.... .......++|+|++|++++|+|+++++ +|+|++ |||+| +.||++ +++
T Consensus 308 ~YG~TE~~~~~~~~~~~~~~~~~~~~~iG~p~~~~~~~i~d~~~~~~~~~g~~--GEl~i~G~~v~~GY~~------~p~ 379 (620)
T 4dg8_A 308 GYGPTENTTFTCCHVVTDDDLEEDDIPIGKAIAGTAVLLLDEHGQEIAEPDRA--GEIVAFGAGLAQGYRN------DAA 379 (620)
T ss_dssp EECCGGGCSCSEEEECCTGGGGSSSCCCBEECTTEEEEEECTTSCBCCSSSCC--EEEEEEETTCCSEETT------CHH
T ss_pred eEchhhhhhheEEEeccccccCCCCCCceecccCcEEEEECccCCCCCCCCCc--eEEEEeccccccccCC------Chh
Confidence 9999999975443222 122345689999999999999999988 789997 99999 456665 788
Q ss_pred cccccccccccCCCc--eeEeeCceEEEecCceEEEEeccCCccccCceeecchHHHHhhcCCCCceeeEEEEEeecCcc
Q 006121 574 HEEVYFRGMPMYKGM--CLRRHGDIIKRTVGGYIIVQGRADDTMNLGGIKALLLPLTFLSSPRSSFKCLHIYAWLYFHKL 651 (660)
Q Consensus 574 ~t~~~f~~~p~~~~~--r~y~TGDl~~~~~dG~l~~~GR~dd~iki~G~rv~~~eIE~~L~~~~~V~~a~vv~~~~~~~~ 651 (660)
.|+++|..+|+ ++. |||||||+|++++||+|+|+||+|||||++|+||+|+|||++|.+||+|++|+|+...+....
T Consensus 380 ~t~~~f~~~p~-~~~~~~~yrTGDl~~~~~dG~l~~~GR~dd~Ik~~G~ri~~~eIE~~l~~~p~V~~a~Vv~~~~~~~~ 458 (620)
T 4dg8_A 380 RTRASFVELPY-RGRLLRAYRTGDRARYDEQGRLRFIGRGDGQVKLNGYRLDLPALEQRFRRQPGILDCALLVRERNGVK 458 (620)
T ss_dssp HHHHHEEEEEE-TTEEEEEEEEEEEEEECTTSCEEEEECSSSEEEETTEEEEHHHHHHHHHTSTTEEEEEEEEEEETTEE
T ss_pred hhhhhhccCCC-CCCCceEEeCCCEEEECCCCeEEEEccCCCEEEECCEEcCHHHHHHHHHhCCCccEEEEEEEeCCCce
Confidence 99999999885 344 899999999999999999999999999999999999999999999999999999988877777
Q ss_pred eeeeecc
Q 006121 652 ELIFYFS 658 (660)
Q Consensus 652 ~l~a~~~ 658 (660)
++++|+.
T Consensus 459 ~lv~~~~ 465 (620)
T 4dg8_A 459 QLLCAWT 465 (620)
T ss_dssp EEEEEEE
T ss_pred EEEEEEe
Confidence 7777754
No 5
>3g7s_A Long-chain-fatty-acid--COA ligase (FADD-1); protein structure initiative, PSI-II, NYSGXRC, 11193J, structural genomics; 2.15A {Archaeoglobus fulgidus dsm 4304}
Probab=100.00 E-value=1.1e-71 Score=622.29 Aligned_cols=442 Identities=15% Similarity=0.108 Sum_probs=352.9
Q ss_pred cCCCCCCcEEEEEecCCCCCCCceeecHHHHHHHHHHHHHHHHhc-cCCCCEEEEEcCCCHHHHHHHHHHHHcCcEEEec
Q 006121 185 HRRKEDNTVAIVWREDRCDESAVNLMTYKELREQVMLVANALDTM-FSKGDAIAIDMPMTVRAVIIYLAIILAGYVVVSI 263 (660)
Q Consensus 185 ~a~~~pd~~Av~~~~~~~~~~~~~~lTY~eL~~~a~~lA~~L~~~-v~~gd~V~i~~~~s~~~vva~lA~lkaGa~~vpl 263 (660)
+++++|+++|+++.+.....+..+++||+||+++++++|++|++. +++||+|+|+++|++++++++|||+|+|+++|||
T Consensus 28 ~a~~~p~~~A~~~~~~~~~~~~~~~~Ty~el~~~~~~lA~~L~~~Gv~~gd~V~i~~~~~~~~~~~~lA~~~~G~~~vpl 107 (549)
T 3g7s_A 28 AAEKFGEKTAIISAEPKFPSEFPESMNFLEICEVTKKLASGISRKGVRKGEHVGVCIPNSIDYVMTIYALWRVAATPVPI 107 (549)
T ss_dssp HHHHHTTSEEEEEESSCCCCSSCSEEEHHHHHHHHHHHHHHHHHTTCCTTCEEEEECCSSHHHHHHHHHHHHTTCEEEEC
T ss_pred HHHhCCCceEEEeCCCcccccccceeeHHHHHHHHHHHHHHHHHcCCCCCCEEEEECCCCHHHHHHHHHHHHhCCEEEcc
Confidence 347899999999987422233445999999999999999999999 9999999999999999999999999999999999
Q ss_pred CCCCCHHHHHHHHHhcCeeEEEeecceeecCccccchhhHhccCCCcEEEEcCCCCCCCCCCCCCCcchhhhhccCCCCC
Q 006121 264 ADSFAAREIATRLRVSKAKGIFTQDFILRGGRKFPLYSKVLGAAPLKAIVLPAIGNDVGIPLREQDLSWKDFLSSVDYHP 343 (660)
Q Consensus 264 ~p~~p~~~l~~~l~~~~~~~il~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 343 (660)
||.+|.+++.+++++++++++|+++... +.+...........+++... ...+++++......
T Consensus 108 ~~~~~~~~l~~il~~~~~~~~i~~~~~~------~~~~~~~~~~~~~~~~~~~~----------~~~~~~~~~~~~~~-- 169 (549)
T 3g7s_A 108 NPMYKSFELEHILNDSEATTLVVHSMLY------ENFKPVLEKTGVERVFVVGG----------EVNSLSEVMDSGSE-- 169 (549)
T ss_dssp CTTCCHHHHHHHHHHTTCSEEEEEGGGH------HHHHHHHTTSCCCEEEEETC----------SSSCHHHHHHHSCS--
T ss_pred CCCCCHHHHHHHHHhcCCCEEEEChHHH------HHHHHHHhhCCCcEEEEeCC----------CCcCHHHHHhcCcc--
Confidence 9999999999999999999999997542 22223333333222222211 22345665554332
Q ss_pred CCCCCCCccCC-CCCeEEEEecCCCCCCcceEEecchhhHHHHHHhhHhcCCCCCCEEEEecCccccchhhHHHHhhhcC
Q 006121 344 RPNYYSPVYNP-VDAVVNILFSSGTTGEPKAIPWTQLSSIRCTAEGWAHIDLKVGDVYCWPTNLGWVMGPVILFSSFLNG 422 (660)
Q Consensus 344 ~~~~~~~~~~~-~~~~a~i~~TSGSTG~PKgV~~sh~~l~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~l~~G 422 (660)
........ ++++|||+|||||||+||||+++|+++.+.+.+....++++++|++++.+|++|+.++..++.++..|
T Consensus 170 ---~~~~~~~~~~~d~a~i~~TSGTTG~PKgV~~sh~~l~~~~~~~~~~~~~~~~d~~~~~~p~~~~~~~~~~~~~l~~G 246 (549)
T 3g7s_A 170 ---DFENVKVNPEEDVALIPYTGGTTGMPKGVMLTHFNLAANALQLAVATGLSHMDTIVGCMPMFHSAEFGLVNLMVTVG 246 (549)
T ss_dssp ---CCCCCCCCTTTSEEECCEECCCCC-CEEEEEEHHHHHHHHHHHHHHHCCCTTCEEECCSCTTSHHHHHHHTTHHHHC
T ss_pred ---ccccccCCCCCCEEEEEECCCccCCCceEEEcHHHHHHHHHHHHHHcCCCCCCEEEEeCcHHHHHHHHHHHHHHhcC
Confidence 11122233 38999999999999999999999999999998888889999999999999999999987788999999
Q ss_pred cEEEEecCCCChhhHHHHHHHcCCeEEeecHHHHHHHHhcCCCC--CCCccCccEEEeecCCCChhhHHHHHhh----CC
Q 006121 423 ATLALYQGSPLERSFGKFVQDAGVTVLGTVPSLVKAWRNTNCLE--GLDWTKIRSFASTGETSNVDDDLWLSSK----AW 496 (660)
Q Consensus 423 ~~lv~~~~~~~~~~l~~~i~~~~vt~l~~~P~~l~~l~~~~~~~--~~~l~~lr~v~~gGe~l~~~~~~~~~~~----~~ 496 (660)
+++++.+ .+++..+++.|+++++|+++++|+++..|++..... ..++++||.+++|||++++++.+++.+. ++
T Consensus 247 ~~~~~~~-~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~~~~~~lr~~~~gg~~l~~~~~~~~~~~~~~~~~ 325 (549)
T 3g7s_A 247 NEYVVMG-MFNQEMLAENIEKYKGTFSWAVPPALNVLVNTLESSNKTYDWSYLKVFATGAWPVAPALVEKLLKLAAEKCN 325 (549)
T ss_dssp CEEEEES-SCCHHHHHHHHHHTTCCEEEECHHHHHHHHHHHHHSCCCCCCTTCCEEEEESSCCCHHHHHHHHHHHHHHSS
T ss_pred ceEEEcC-CCCHHHHHHHHHHhCCeEEEeCCHHHHHHHhhhhhhcccCCccceeEEEeCCccCCHHHHHHHHHHHHhhcC
Confidence 9999987 678999999999999999999999999998754322 2568999999999999999999888876 33
Q ss_pred --CCceeccccccccccccccCCcCCCCcccccCcCCCCceEEEEc-CCCCcCCCCCCceeEEEE-----eccccCCccc
Q 006121 497 --YNAIIESCGGTELSSAYIQGSLLQPQAFGAFSTATMTAGLVILD-ECGVPYPDDQPCVGEVGL-----FPLYLGASDR 568 (660)
Q Consensus 497 --~~~l~n~YG~TE~~~~~~~~~~~~~~~~~~iG~p~~~~~~~vld-~~~~~vp~G~~giGel~v-----~~~y~~~~~~ 568 (660)
.++++|.||+||++++++..........+++|+|+++++++|+| ++|+++|.|+. |||+| +.||++
T Consensus 326 ~~~~~~~~~YG~TE~~~~~~~~~~~~~~~~~~~G~p~~~~~~~i~d~~~g~~~~~g~~--GEl~v~g~~v~~GY~~---- 399 (549)
T 3g7s_A 326 NPRLRHNQIWGMTEACPMVTTNPPLRLDKSTTQGVPMSDIELKVISLEDGRELGVGES--GEIVIRGPNIFKGYWK---- 399 (549)
T ss_dssp CTTCEEEEEEECGGGSSEEEECCGGGGGGTTSCCEECTTCEEEEECSSSCCEECTTCC--EEEEEESTTSCSEETT----
T ss_pred CccccccceEeccccchhhhcCCccccCcCCCccccCCCCEEEEEeCCCCcCCCCCCc--eEEEEECcchhhhhCC----
Confidence 37899999999999866655544445677999999999999999 89999999997 99999 346665
Q ss_pred ccCcccccccccccccCCCceeEeeCceEEEecCceEEEEeccCCccccCceeecchHHHHhhcCCCCceeeEEEEEeec
Q 006121 569 LLNADHEEVYFRGMPMYKGMCLRRHGDIIKRTVGGYIIVQGRADDTMNLGGIKALLLPLTFLSSPRSSFKCLHIYAWLYF 648 (660)
Q Consensus 569 ~~~~~~t~~~f~~~p~~~~~r~y~TGDl~~~~~dG~l~~~GR~dd~iki~G~rv~~~eIE~~L~~~~~V~~a~vv~~~~~ 648 (660)
+++.|++.|..++ +|.|||+|||+|++|+||+|+|+||+|||||++|+||+|.|||++|.+||+|++|+|+...+.
T Consensus 400 --~~~~t~~~f~~~~--~g~~~~~TGDl~~~~~dG~l~~~GR~dd~ik~~G~~v~p~eIE~~l~~~p~V~~a~Vv~~~~~ 475 (549)
T 3g7s_A 400 --REKENQECWWYDE--KGRKFFRTGDVGFIDEEGFLHFQDRVKEVIKYKGYTIAPFELEALLMKHEAVMDVAVIGKPDE 475 (549)
T ss_dssp --CTTGGGTSEEECT--TCCEEEEEEEEEEECTTSCEEEEEEC------------CHHHHHHHTTSTTEEEEEEECCCC-
T ss_pred --ChhhhhhhhhccC--CCCceEccCcEEEEcCCceEEEeccccceEEECCEEECHHHHHHHHHhCCCeeeEEEEeeEcc
Confidence 7889999996544 477899999999999999999999999999999999999999999999999999999876554
Q ss_pred C-cceeeeecc
Q 006121 649 H-KLELIFYFS 658 (660)
Q Consensus 649 ~-~~~l~a~~~ 658 (660)
. +..+++|+.
T Consensus 476 ~~g~~~~a~vv 486 (549)
T 3g7s_A 476 EAGEVPKAFIV 486 (549)
T ss_dssp -----CEEEEE
T ss_pred ccCceEEEEEE
Confidence 3 445666653
No 6
>3ni2_A 4-coumarate:COA ligase; 4CL, phenylpropanoid biosynthesis; HET: AYL EPE; 1.90A {Populus tomentosa} PDB: 3a9v_A* 3a9u_A*
Probab=100.00 E-value=4.5e-71 Score=615.44 Aligned_cols=434 Identities=18% Similarity=0.195 Sum_probs=361.5
Q ss_pred cCCCCCCcEEEEEecCCCCCCCceeecHHHHHHHHHHHHHHHHhc-cCCCCEEEEEcCCCHHHHHHHHHHHHcCcEEEec
Q 006121 185 HRRKEDNTVAIVWREDRCDESAVNLMTYKELREQVMLVANALDTM-FSKGDAIAIDMPMTVRAVIIYLAIILAGYVVVSI 263 (660)
Q Consensus 185 ~a~~~pd~~Av~~~~~~~~~~~~~~lTY~eL~~~a~~lA~~L~~~-v~~gd~V~i~~~~s~~~vva~lA~lkaGa~~vpl 263 (660)
+++++|+++|+++.+.+ +++||+||+++++++|++|++. +++||+|+|+++|++++++++|||+++|++++|+
T Consensus 31 ~a~~~p~~~a~~~~~~~------~~~Ty~el~~~~~~lA~~L~~~Gv~~gd~V~i~~~~~~~~~~~~la~~~~Gav~vpl 104 (536)
T 3ni2_A 31 NLSNHSSKPCLINGANG------DVYTYADVELTARRVASGLNKIGIQQGDVIMLFLPSSPEFVLAFLGASHRGAIITAA 104 (536)
T ss_dssp TGGGSTTSEEEEETTTC------CEEEHHHHHHHHHHHHHHHHHTTCCTTCEEEEECCSSHHHHHHHHHHHHHTCEEEEC
T ss_pred HhhcCCCceEEEECCCC------CEEEHHHHHHHHHHHHHHHHHcCCCCCCEEEEEcCCcHHHHHHHHHHHHhCCEEecc
Confidence 45789999999986321 2899999999999999999999 9999999999999999999999999999999999
Q ss_pred CCCCCHHHHHHHHHhcCeeEEEeecceeecCccccchhhHhccCCCcEEEEcCCCCCCCCCCCCCCcchhhhhccCCCCC
Q 006121 264 ADSFAAREIATRLRVSKAKGIFTQDFILRGGRKFPLYSKVLGAAPLKAIVLPAIGNDVGIPLREQDLSWKDFLSSVDYHP 343 (660)
Q Consensus 264 ~p~~p~~~l~~~l~~~~~~~il~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 343 (660)
+|.++.+++.+++++++++++|++.... +.+...........+.+... ..+...++++......
T Consensus 105 ~~~~~~~~l~~~l~~~~~~~~i~~~~~~------~~~~~~~~~~~~~~~~~~~~--------~~~~~~~~~~~~~~~~-- 168 (536)
T 3ni2_A 105 NPFSTPAELAKHAKASRAKLLITQACYY------EKVKDFARESDVKVMCVDSA--------PDGCLHFSELTQADEN-- 168 (536)
T ss_dssp CTTCCHHHHHHHHHHHTEEEEEECGGGT------HHHHHHHHHHTCEEEESSCC--------CTTCEETHHHHTSCGG--
T ss_pred CCCCCHHHHHHHHHhcCCEEEEEChHHH------HHHHHHHhhcCceEEEecCC--------CCCccCHHHHhhcccc--
Confidence 9999999999999999999999987542 12222222222233333211 1233455555543322
Q ss_pred CCCCCCCccCCCCCeEEEEecCCCCCCcceEEecchhhHHHHHHhhH----hcCCCCCCEEEEecCccccchh-hHHHHh
Q 006121 344 RPNYYSPVYNPVDAVVNILFSSGTTGEPKAIPWTQLSSIRCTAEGWA----HIDLKVGDVYCWPTNLGWVMGP-VILFSS 418 (660)
Q Consensus 344 ~~~~~~~~~~~~~~~a~i~~TSGSTG~PKgV~~sh~~l~~~~~~~~~----~~~~~~~~~~l~~~~~~~~~~~-~~~~~~ 418 (660)
..+.....++++|||+|||||||+||||+++|+++++.+.+... .+.+.++|++++.+|++|+.++ ..++.+
T Consensus 169 ---~~~~~~~~~~d~a~i~~TSGTTG~PKgv~~th~~l~~~~~~~~~~~~~~~~~~~~d~~l~~~p~~h~~~~~~~~~~~ 245 (536)
T 3ni2_A 169 ---EAPQVDISPDDVVALPYSSGTTGLPKGVMLTHKGLITSVAQQVDGDNPNLYFHSEDVILCVLPMFHIYALNSIMLCG 245 (536)
T ss_dssp ---GCCCCCCCTTSEEECCEECTTSSSCEEEEEEHHHHHHHHHHHHCSSSCSSCCCTTCCEEECSCTTSHHHHHHTHHHH
T ss_pred ---ccccCCCCccCEEEEEcCCCccccchHHHhhHHHHHHHHHHHHhhccccccCCCCCEEEEecChHHHHHHHHHHHHH
Confidence 12233457899999999999999999999999999887765543 4568899999999999999998 457889
Q ss_pred hhcCcEEEEecCCCChhhHHHHHHHcCCeEEeecHHHHHHHHhcCCCCCCCccCccEEEeecCCCChhhHHHHHhhCCCC
Q 006121 419 FLNGATLALYQGSPLERSFGKFVQDAGVTVLGTVPSLVKAWRNTNCLEGLDWTKIRSFASTGETSNVDDDLWLSSKAWYN 498 (660)
Q Consensus 419 l~~G~~lv~~~~~~~~~~l~~~i~~~~vt~l~~~P~~l~~l~~~~~~~~~~l~~lr~v~~gGe~l~~~~~~~~~~~~~~~ 498 (660)
|..|+++++.+ ..++..+++.|+++++|++.++|+++..|++.......++++||.+++|||++++++.+++++.++++
T Consensus 246 l~~G~~~v~~~-~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~l~~lr~i~~gGe~l~~~~~~~~~~~~~~~ 324 (536)
T 3ni2_A 246 LRVGAPILIMP-KFEIGSLLGLIEKYKVSIAPVVPPVMMSIAKSPDLDKHDLSSLRMIKSGGAPLGKELEDTVRAKFPQA 324 (536)
T ss_dssp HHHTCCEEECS-SCCHHHHHHHHHHHTCCEEEECHHHHHHHHTCSCGGGSCCTTCCEEEEESSCCCHHHHHHHHHHCTTS
T ss_pred HhcCCEEEEcC-CCCHHHHHHHHHHhCCeEEEccHHHHHHHHhCcccccCCCccceEEEECCCCCCHHHHHHHHHHCCCC
Confidence 99999999987 57889999999999999999999999999988766677899999999999999999999999998889
Q ss_pred ceeccccccccccccccCC----cCCCCcccccCcCCCCceEEEEc-CCCCcCCCCCCceeEEEE-----eccccCCccc
Q 006121 499 AIIESCGGTELSSAYIQGS----LLQPQAFGAFSTATMTAGLVILD-ECGVPYPDDQPCVGEVGL-----FPLYLGASDR 568 (660)
Q Consensus 499 ~l~n~YG~TE~~~~~~~~~----~~~~~~~~~iG~p~~~~~~~vld-~~~~~vp~G~~giGel~v-----~~~y~~~~~~ 568 (660)
+++|.||+||++++++... .......+++|+|++|++++|+| ++|+++|.|++ |||+| +.||++
T Consensus 325 ~l~~~YG~TE~~~~~~~~~~~~~~~~~~~~~~~G~~~~~~~~~i~d~~~~~~~~~g~~--GEl~v~g~~v~~GY~~---- 398 (536)
T 3ni2_A 325 RLGQGYGMTEAGPVLAMCLAFAKEPFDIKPGACGTVVRNAEMKIVDPETGASLPRNQP--GEICIRGDQIMKGYLN---- 398 (536)
T ss_dssp EEEEEEECGGGSSEEEECGGGSSSCCCCCTTCCCEECSSCEEEEECTTTCCBCCTTCC--EEEEEESTTSCSEETT----
T ss_pred CccccccccccchhhhcccccCCccccCCCCCeeEeCCCcEEEEEeCCCCcCCCCCCc--cEEEEeCcccchhhcC----
Confidence 9999999999986544321 12234567899999999999999 67999999997 99999 345655
Q ss_pred ccCcccccccccccccCCCceeEeeCceEEEecCceEEEEeccCCccccCceeecchHHHHhhcCCCCceeeEEEEEeec
Q 006121 569 LLNADHEEVYFRGMPMYKGMCLRRHGDIIKRTVGGYIIVQGRADDTMNLGGIKALLLPLTFLSSPRSSFKCLHIYAWLYF 648 (660)
Q Consensus 569 ~~~~~~t~~~f~~~p~~~~~r~y~TGDl~~~~~dG~l~~~GR~dd~iki~G~rv~~~eIE~~L~~~~~V~~a~vv~~~~~ 648 (660)
+++.|++.|..+ +||+|||+|++|+||+|+|+||+|||||++|+||+|.|||++|.+||+|++|+|+...+.
T Consensus 399 --~p~~t~~~~~~~------g~~~TGDl~~~~~dG~l~~~GR~dd~ik~~G~~v~p~eIE~~l~~~p~V~~a~Vv~~~~~ 470 (536)
T 3ni2_A 399 --DPEATSRTIDKE------GWLHTGDIGYIDDDDELFIVDRLKELIKYKGFQVAPAELEALLIAHPEISDAAVVGLKDE 470 (536)
T ss_dssp --CHHHHHHHBCTT------SCEEEEEEEEECTTSCEEEEEECSCCEEETTEEECHHHHHHHHHTSTTEEEEEEEEEEET
T ss_pred --ChhHHHhhccCC------CceEcccEEEEcCCceEEEEecccceEEECCEEECHHHHHHHHHhCCCcceEEEEeeecC
Confidence 788888888643 399999999999999999999999999999999999999999999999999999987765
Q ss_pred C-cceeeeecc
Q 006121 649 H-KLELIFYFS 658 (660)
Q Consensus 649 ~-~~~l~a~~~ 658 (660)
. +..+++|+.
T Consensus 471 ~~g~~~~a~vv 481 (536)
T 3ni2_A 471 DAGEVPVAFVV 481 (536)
T ss_dssp TTEEEEEEEEE
T ss_pred CCCceeEEEEE
Confidence 4 455677764
No 7
>3etc_A AMP-binding protein; adenylate-forming acyl-COA synthetase ligase, ligase; HET: PGE 1PE EPE; 2.10A {Methanosarcina acetivorans}
Probab=100.00 E-value=1e-70 Score=616.87 Aligned_cols=462 Identities=16% Similarity=0.124 Sum_probs=371.4
Q ss_pred CcCCCCccchhhhcccccCcCCCCCCcEEEEEecCCCCCCCceeecHHHHHHHHHHHHHHHHhc-cCCCCEEEEEcCCCH
Q 006121 166 TWLPGSVLNIAECCLLPSNHRRKEDNTVAIVWREDRCDESAVNLMTYKELREQVMLVANALDTM-FSKGDAIAIDMPMTV 244 (660)
Q Consensus 166 ~~~~~~~~~~~~~~l~~~~~a~~~pd~~Av~~~~~~~~~~~~~~lTY~eL~~~a~~lA~~L~~~-v~~gd~V~i~~~~s~ 244 (660)
.|......|....+++.++ +++|+++|+++.+.. +..+++||+||+++++++|++|++. +++||+|+|+++|++
T Consensus 48 ~~~~~~~~n~~~~~l~~~a--~~~pd~~Al~~~~~~---g~~~~~Ty~eL~~~~~~~A~~L~~~Gv~~Gd~V~l~~~~~~ 122 (580)
T 3etc_A 48 KILVPENFNFAYDVVDVYA--RDSPEKLAMIWCDDY---GNEKIFTFKDLKYYSDKAANFFVKHGIGKGDYVMLTLKSRY 122 (580)
T ss_dssp CBCCCSSCCHHHHTHHHHH--HHCTTCEEEEEEESS---SCEEEEEHHHHHHHHHHHHHHHHHTTCCTTCEEEEECTTCT
T ss_pred CCCCcccchHHHHHHHHHH--hhCCCCEEEEEEcCC---CCEeEEeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEcCCCH
Confidence 4666666777777776654 789999999985431 3346899999999999999999999 999999999999999
Q ss_pred HHHHHHHHHHHcCcEEEecCCCCCHHHHHHHHHhcCeeEEEeecceeecCccccchhhHhccCC---CcEEEEcCCCCCC
Q 006121 245 RAVIIYLAIILAGYVVVSIADSFAAREIATRLRVSKAKGIFTQDFILRGGRKFPLYSKVLGAAP---LKAIVLPAIGNDV 321 (660)
Q Consensus 245 ~~vva~lA~lkaGa~~vpl~p~~p~~~l~~~l~~~~~~~il~~~~~~~~~~~~~~~~~~~~~~~---~~~~~v~~~~~~~ 321 (660)
++++++|||+|+|++++|++|.++.+++.++++++++++||++.... ..+.........+ ...+.+...
T Consensus 123 e~~~~~lA~~~~Gav~vpl~~~~~~~~l~~~l~~~~~~~ii~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~---- 194 (580)
T 3etc_A 123 DFWYCMLGLHKLGAIAVPATHMLKTRDIVYRIEKAGLKMIVCIAEDD----VPEQVDEAHAECGDIPLKKAKVGGD---- 194 (580)
T ss_dssp HHHHHHHHHHHHTCEEEECCTTCCHHHHHHHHHHHTCCEEEEESSTT----HHHHHHHHHHHHCSCCCEEEEESSS----
T ss_pred HHHHHHHHHHhCCEEEEeCCccCCHHHHHHHHHhcCCCEEEEecchh----HHHHHHHHhhhCCCcceEEEEeCCc----
Confidence 99999999999999999999999999999999999999999987521 0011222222222 233333211
Q ss_pred CCCCCCCCcchhhhhccCCCCCCCCCCCCccCCCCCeEEEEecCCCCCCcceEEecchhhHHHHHHhhHhcCCCCCCEEE
Q 006121 322 GIPLREQDLSWKDFLSSVDYHPRPNYYSPVYNPVDAVVNILFSSGTTGEPKAIPWTQLSSIRCTAEGWAHIDLKVGDVYC 401 (660)
Q Consensus 322 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~i~~TSGSTG~PKgV~~sh~~l~~~~~~~~~~~~~~~~~~~l 401 (660)
...+..++.+.+...... ...........++++|||+|||||||+||||+++|++++..+......+++.++++++
T Consensus 195 ---~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~d~a~i~~TSGTTG~PKgV~~~~~~~~~~~~~~~~~~~~~~~~~~~ 270 (580)
T 3etc_A 195 ---VLEGWIDFRKELEESSPI-FERPTGEVSTKNEDICLVYFSSGTAGFPKMVEHDNTYPLGHILTAKYWQNVEDDGLHY 270 (580)
T ss_dssp ---CCTTCEEHHHHHHHSCSC-CCCCCGGGSCCTTSEEEEEEECCSSSSCEEEEEETTHHHHHHHHHHTTSCCCTTCEEE
T ss_pred ---cccccccHHHHHhhCCcc-cccCccccCCCCCCcEEEEEeCCCCCCccEEEeccHHHHHHHHHHHHhhCCCCCceEE
Confidence 112345566655443320 0001111245789999999999999999999999999888777666667889999999
Q ss_pred EecCccccchhhH-HHHhhhcCcEEEEec-CCCChhhHHHHHHHcCCeEEeecHHHHHHHHhcCCCCCCCccCccEEEee
Q 006121 402 WPTNLGWVMGPVI-LFSSFLNGATLALYQ-GSPLERSFGKFVQDAGVTVLGTVPSLVKAWRNTNCLEGLDWTKIRSFAST 479 (660)
Q Consensus 402 ~~~~~~~~~~~~~-~~~~l~~G~~lv~~~-~~~~~~~l~~~i~~~~vt~l~~~P~~l~~l~~~~~~~~~~l~~lr~v~~g 479 (660)
+.++++|+.+.+. ++.+++.|+++++.+ ..+++..+++.|+++++|+++++|++++.|.+.. ....++++||.+++|
T Consensus 271 ~~~~~~~~~~~~~~~~~~l~~G~~~~~~~~~~~~~~~~~~~i~~~~vt~~~~~P~~~~~l~~~~-~~~~~l~~lr~i~~g 349 (580)
T 3etc_A 271 TVADSGWGKCVWGKLYGQWIAGCAVFVYDYDRFEAKNMLEKASKYGVTTFCAPPTIYRFLIKED-LSHYNFSTLKYAVVA 349 (580)
T ss_dssp ECCCTTSTHHHHHTTHHHHHTTCEEEEEECSSCCHHHHHHHHHHHTCCEEEECHHHHHHHHTSC-C---CCTTCCEEEEC
T ss_pred EeCChHHHHHHHHHHHHHHhCCcEEEEecCCCCCHHHHHHHHHHHCCeEEEccHHHHHHHHhcc-cccCCCccceEEEEc
Confidence 9999999998875 788999999999985 4678999999999999999999999999998763 345678999999999
Q ss_pred cCCCChhhHHHHHhhCCCCceeccccccccccccccCCcCCCCcccccCcCCCCceEEEEcCCCCcCCCCCCceeEEEEe
Q 006121 480 GETSNVDDDLWLSSKAWYNAIIESCGGTELSSAYIQGSLLQPQAFGAFSTATMTAGLVILDECGVPYPDDQPCVGEVGLF 559 (660)
Q Consensus 480 Ge~l~~~~~~~~~~~~~~~~l~n~YG~TE~~~~~~~~~~~~~~~~~~iG~p~~~~~~~vld~~~~~vp~G~~giGel~v~ 559 (660)
||++++++.+++.+.+ +++++|.||+||+++.++.. .......+++|+|++|++++|+|++|+++|+|+. |||+|.
T Consensus 350 Ge~l~~~~~~~~~~~~-g~~i~~~YG~TE~~~~~~~~-~~~~~~~~~~G~p~~~~~v~ivd~~g~~~~~g~~--GEl~v~ 425 (580)
T 3etc_A 350 GEPLNPEVFNRFLEFT-GIKLMEGFGQTETVVTIATF-PWMEPKPGSIGKPTPGYKIELMDRDGRLCEVGEE--GEIVIN 425 (580)
T ss_dssp SSCCCHHHHHHHHHHH-SCCCEEEECCTTSSCCEECC-TTSCCCTTCCBEECTTCEEEEECTTSCBCCTTCC--EEEEEE
T ss_pred cCCCCHHHHHHHHHHh-CCeEecccccccccceeecC-CCCCCCCCccccCCCCCEEEEECCCCCCCCCCCc--eEEEEe
Confidence 9999999999998776 48899999999998754433 3334567899999999999999999999999997 999994
Q ss_pred ------ccccCCcccccCcccccccccccccCCCceeEeeCceEEEecCceEEEEeccCCccccCceeecchHHHHhhcC
Q 006121 560 ------PLYLGASDRLLNADHEEVYFRGMPMYKGMCLRRHGDIIKRTVGGYIIVQGRADDTMNLGGIKALLLPLTFLSSP 633 (660)
Q Consensus 560 ------~~y~~~~~~~~~~~~t~~~f~~~p~~~~~r~y~TGDl~~~~~dG~l~~~GR~dd~iki~G~rv~~~eIE~~L~~ 633 (660)
++.+.+ |+.+++.|++.|.. +||+|||+|++|+||+|+|+||+|||||++|+||+|.|||++|.+
T Consensus 426 ~~~g~~~~~~~g--Y~~~p~~t~~~f~~-------gwy~TGDlg~~d~dG~l~~~GR~dd~Ik~~G~~I~p~eIE~~l~~ 496 (580)
T 3etc_A 426 TMEGKPVGLFVH--YGKDPERTEETWHD-------GYYHTGDMAWMDEDGYLWFVGRADDIIKTSGYKVGPFEVESALIQ 496 (580)
T ss_dssp CTTCCCTTCCCE--ETTCHHHHHHHEET-------TEEEEEEEEEECTTSCEEEEEESSSCEEETTEEECHHHHHHHHTT
T ss_pred cCCCCCCeeecc--ccCCHhHHHhhcCC-------CEEecCcEEEECCCCcEEEEecCCCEEEECCEEECHHHHHHHHHh
Confidence 222221 22377889888852 399999999999999999999999999999999999999999999
Q ss_pred CCCceeeEEEEEeecC-cceeeeecc
Q 006121 634 RSSFKCLHIYAWLYFH-KLELIFYFS 658 (660)
Q Consensus 634 ~~~V~~a~vv~~~~~~-~~~l~a~~~ 658 (660)
||+|.+|+|+...+.. +..+++|+.
T Consensus 497 ~p~V~~a~Vvg~~~~~~g~~~~a~vv 522 (580)
T 3etc_A 497 HPAVLECAITGVPDPVRGQVIKATIV 522 (580)
T ss_dssp STTEEEEEEEEEEETTTEEEEEEEEE
T ss_pred CCCeeeEEEEeeeccCCCcEEEEEEE
Confidence 9999999999877664 445666653
No 8
>3rg2_A Enterobactin synthase component E (ENTE), 2,3-DIH dihydroxybenzoate synthetase, isochroismatase...; adenylate-forming enzymes, ANL superfamily; HET: SVS PNS; 3.10A {Escherichia coli}
Probab=100.00 E-value=1.8e-70 Score=620.50 Aligned_cols=430 Identities=17% Similarity=0.175 Sum_probs=353.4
Q ss_pred CCcEEEEEecCCCCCCCceeecHHHHHHHHHHHHHHHHhc-cCCCCEEEEEcCCCHHHHHHHHHHHHcCcEEEecCCCCC
Q 006121 190 DNTVAIVWREDRCDESAVNLMTYKELREQVMLVANALDTM-FSKGDAIAIDMPMTVRAVIIYLAIILAGYVVVSIADSFA 268 (660)
Q Consensus 190 pd~~Av~~~~~~~~~~~~~~lTY~eL~~~a~~lA~~L~~~-v~~gd~V~i~~~~s~~~vva~lA~lkaGa~~vpl~p~~p 268 (660)
||++|+++.++ ++||+||+++++++|++|++. +++||+|+|+++||+++++++|||+|+|++|||++|.+|
T Consensus 39 pd~~Av~~~~~--------~lTY~eL~~~a~~lA~~L~~~Gv~~gd~V~l~~~~s~~~vva~lA~l~aG~~~vpl~~~~~ 110 (617)
T 3rg2_A 39 SDSIAVIDGER--------QLSYRELNQAADNLACSLRRQGIKPGETALVQLGNVAELYITFFALLKLGVAPVLALFSHQ 110 (617)
T ss_dssp CCSEEEEETTE--------EEEHHHHHHHHHHHHHHHHHTTCCTTCEEEEECCSSHHHHHHHHHHHHHTCEEEEECTTCC
T ss_pred CCCeEEecCCc--------eEeHHHHHHHHHHHHHHHHHcCCCCCCEEEEECCCcHHHHHHHHHHHhcCeEEccCCcccc
Confidence 99999999887 999999999999999999999 999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHhcCeeEEEeecceeecCccccchhhHhccCCC-cEEEEcCCCCCCCCCCCCCCcchhhhhccCCCCCCCCC
Q 006121 269 AREIATRLRVSKAKGIFTQDFILRGGRKFPLYSKVLGAAPL-KAIVLPAIGNDVGIPLREQDLSWKDFLSSVDYHPRPNY 347 (660)
Q Consensus 269 ~~~l~~~l~~~~~~~il~~~~~~~~~~~~~~~~~~~~~~~~-~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 347 (660)
.+++.++++++++++++++....... .......+....+. ..+.+.... ....+.+....... .
T Consensus 111 ~~~l~~~l~~~~~~~vl~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~---------~~~~~~~~~~~~~~-----~ 175 (617)
T 3rg2_A 111 RSELNAYASQIEPALLIADRQHALFS-GDDFLNTFVTEHSSIRVVQLLNDS---------GEHNLQDAINHPAE-----D 175 (617)
T ss_dssp HHHHHHHHHHHCCSEEEEETTSGGGS-SSHHHHHHHHHSTTCCEEEEETCC---------STTBHHHHHHSCCS-----S
T ss_pred HHHHHHHHhhcCceEEEecccccccc-cHHHHHHHhhcCCccceeeecccc---------cccchhhhhccccc-----c
Confidence 99999999999999999997532100 00111222222222 222221110 11223333332221 1
Q ss_pred CCCccCCCCCeEEEEecCCCCCCcceEEecchhhHHHHHHhhHhcCCCCCCEEEEecCccccchh--hHHHHhhhcCcEE
Q 006121 348 YSPVYNPVDAVVNILFSSGTTGEPKAIPWTQLSSIRCTAEGWAHIDLKVGDVYCWPTNLGWVMGP--VILFSSFLNGATL 425 (660)
Q Consensus 348 ~~~~~~~~~~~a~i~~TSGSTG~PKgV~~sh~~l~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~--~~~~~~l~~G~~l 425 (660)
.......++++|||+|||||||+||||+++|+++.+.+.+....+++++++++++.+|++|.+++ +++|.+|+.|+++
T Consensus 176 ~~~~~~~~~~~a~ii~TSGSTG~PKgV~~th~~~~~~~~~~~~~~~~~~~~~~l~~~p~~~~~~~~~~~~~~~l~~G~~~ 255 (617)
T 3rg2_A 176 FTATPSPADEVAYFQLSGGTTGTPKLIPRTHNDYYYSVRRSVEICQFTQQTRYLCAIPAAHNYAMSSPGSLGVFLAGGTV 255 (617)
T ss_dssp CCCCCCCTTSEEEEEECCCSSSSCCEEEEEHHHHHHHHHHHHHHHTCCTTCEEEECSCTTSHHHHHSSHHHHHHHHTCEE
T ss_pred cCCCCCCCCCeEEEEECCCcCCCCCEeehhHHHHHHHHHHHHHhcCCCCcceEEEeccchhhhhhhHHHHHHHHHcCCEE
Confidence 22234567999999999999999999999999999999998889999999999999998776655 5799999999999
Q ss_pred EEecCCCChhhHHHHHHHcCCeEEeecHHHHHHHHhcCCC--CCCCccCccEEEeecCCCChhhHHHHHhhCCCCceecc
Q 006121 426 ALYQGSPLERSFGKFVQDAGVTVLGTVPSLVKAWRNTNCL--EGLDWTKIRSFASTGETSNVDDDLWLSSKAWYNAIIES 503 (660)
Q Consensus 426 v~~~~~~~~~~l~~~i~~~~vt~l~~~P~~l~~l~~~~~~--~~~~l~~lr~v~~gGe~l~~~~~~~~~~~~~~~~l~n~ 503 (660)
++.+ ..++..+++.|+++++|++.++|+++..|++.... ...++++||.+++|||++++++.+++.+.+ +++++|.
T Consensus 256 v~~~-~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~~~l~~lr~i~~gGe~l~~~~~~~~~~~~-~~~~~~~ 333 (617)
T 3rg2_A 256 VLAA-DPSATLCFPLIEKHQVNVTALVPPAVSLWLQALIEGESRAQLASLKLLQVGGARLSATLAARIPAEI-GCQLQQV 333 (617)
T ss_dssp EECS-SCCHHHHHHHHHHTTCCEEEECHHHHHHHHHHHHTTCCTTTTTTCCEEEEESSCCCHHHHHHHHHHT-CSEEEEE
T ss_pred EEeC-CCCHHHHHHHHHHhCCcEEEcchHHHHHHHHhhhcccccccCCCccEEEEcCCcCCHHHHHHHHHHh-CCcEEEE
Confidence 9987 46788999999999999999999999998764322 233689999999999999999999998876 4899999
Q ss_pred ccccccccccccCCcCCCCcccccCcCC-CCceEEEEcCCCCcCCCCCCceeEEEE-----eccccCCcccccCcccccc
Q 006121 504 CGGTELSSAYIQGSLLQPQAFGAFSTAT-MTAGLVILDECGVPYPDDQPCVGEVGL-----FPLYLGASDRLLNADHEEV 577 (660)
Q Consensus 504 YG~TE~~~~~~~~~~~~~~~~~~iG~p~-~~~~~~vld~~~~~vp~G~~giGel~v-----~~~y~~~~~~~~~~~~t~~ 577 (660)
||+||+++.++...........++|+|+ ++++++|+|++++++|.|++ |||+| +.||++ +++.|++
T Consensus 334 YG~tE~~~~~~~~~~~~~~~~~~~G~p~~~~~~~~i~d~~~~~~p~G~~--GEl~i~G~~v~~GY~~------~p~~t~~ 405 (617)
T 3rg2_A 334 FGMAEGLVNYTRLDDSAEKIIHTQGYPMCPDDEVWVADAEGNPLPQGEV--GRLMTRGPYTFRGYYK------SPQHNAS 405 (617)
T ss_dssp EEETTEEEEECCTTSCHHHHHHCCCEESCTTCEEEEECTTSCBCCTTCC--EEEEEECSSSCSCCTT------CHHHHHH
T ss_pred eccCcceeecccCCCcccccccCCCccCCCCceEEEECCCCCCCCCCCc--eEEEecCccccchhcC------Chhhhhh
Confidence 9999998754433222222345899998 78899999999999999997 99999 456665 7889999
Q ss_pred cccccccCCCceeEeeCceEEEecCceEEEEeccCCccccCceeecchHHHHhhcCCCCceeeEEEEEeecC-cceeeee
Q 006121 578 YFRGMPMYKGMCLRRHGDIIKRTVGGYIIVQGRADDTMNLGGIKALLLPLTFLSSPRSSFKCLHIYAWLYFH-KLELIFY 656 (660)
Q Consensus 578 ~f~~~p~~~~~r~y~TGDl~~~~~dG~l~~~GR~dd~iki~G~rv~~~eIE~~L~~~~~V~~a~vv~~~~~~-~~~l~a~ 656 (660)
+|..++ ||||||+|++++||+|+|+||+|||||++|+||+|+|||++|.+||+|++|+|+...+.. +..+++|
T Consensus 406 ~f~~~~------~yrTGDl~~~~~dG~l~~~GR~dd~iki~G~ri~~~eIE~~l~~~p~V~~a~vv~~~~~~~~~~~~a~ 479 (617)
T 3rg2_A 406 AFDANG------FYCSGDLISIDPEGYITVQGREKDQINRGGEKIAAEEIENLLLRHPAVIYAALVSMEDELMGEKSCAY 479 (617)
T ss_dssp HBCTTS------CEEEEEEEEECTTSCEEEEEECSSEEEETTEEEEHHHHHHHHTTSTTEEEEEEEEEEETTTEEEEEEE
T ss_pred ccCCCC------ceecCceEEEcCCceEEEEeecCCEEEECCEEeCHHHHHHHHHhCCCeeEEEEEeccCcccCeeEEEE
Confidence 997654 999999999999999999999999999999999999999999999999999999877654 5677887
Q ss_pred cc
Q 006121 657 FS 658 (660)
Q Consensus 657 ~~ 658 (660)
+.
T Consensus 480 vv 481 (617)
T 3rg2_A 480 LV 481 (617)
T ss_dssp EE
T ss_pred EE
Confidence 64
No 9
>4gr5_A Non-ribosomal peptide synthetase; MBTH-like domain, adenylation domain, ligase, rossmann fold, binding; HET: APC TLA; 1.92A {Streptomyces lydicus} PDB: 4gr4_A
Probab=100.00 E-value=3.2e-71 Score=621.00 Aligned_cols=420 Identities=18% Similarity=0.181 Sum_probs=312.4
Q ss_pred cCCCCCCcEEEEEecCCCCCCCceeecHHHHHHHHHHHHHHHHhc-cCCCCEEEEEcCCCHHHHHHHHHHHHcCcEEEec
Q 006121 185 HRRKEDNTVAIVWREDRCDESAVNLMTYKELREQVMLVANALDTM-FSKGDAIAIDMPMTVRAVIIYLAIILAGYVVVSI 263 (660)
Q Consensus 185 ~a~~~pd~~Av~~~~~~~~~~~~~~lTY~eL~~~a~~lA~~L~~~-v~~gd~V~i~~~~s~~~vva~lA~lkaGa~~vpl 263 (660)
+++++||++|+++.++ ++||+||+++++++|++|+++ +++||+|+|+++|++++++++|||+|+|++++|+
T Consensus 84 ~a~~~pd~~A~~~~~~--------~~Ty~el~~~~~~lA~~L~~~Gv~~gd~V~i~~~n~~~~~~~~lA~~~~G~~~vpl 155 (570)
T 4gr5_A 84 QAARAPDAVALLHEAD--------ELTYGALNERANRLAHRLVGLGVAPGTLVGVHLERGFDMVVALLAVLKAGGGYTML 155 (570)
T ss_dssp HHHHCTTSEEEEETTE--------EEEHHHHHHHHHHHHHHHHHTTCCTTCEEEEECCSSHHHHHHHHHHHHTTCEEEEC
T ss_pred HHHHCCCCeEEECCCC--------cEeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEeCCCHHHHHHHHHHHHHCCEEEEc
Confidence 4478999999999877 999999999999999999999 9999999999999999999999999999999999
Q ss_pred CCCCCHHHHHHHHHhcCeeEEEeecceeecCccccchhhHhccCCCcEEEEcCCCCCCCCCCCCCCcchhhhhccCCCCC
Q 006121 264 ADSFAAREIATRLRVSKAKGIFTQDFILRGGRKFPLYSKVLGAAPLKAIVLPAIGNDVGIPLREQDLSWKDFLSSVDYHP 343 (660)
Q Consensus 264 ~p~~p~~~l~~~l~~~~~~~il~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 343 (660)
+|.++.+++.+++++++++++|++...... ......+..... ....
T Consensus 156 ~~~~~~~~l~~~l~~~~~~~~i~~~~~~~~-------------~~~~~~~~~~~~----------------~~~~----- 201 (570)
T 4gr5_A 156 DPQFPVERLALSLEDTGAPLLVTSRPLSGR-------------LTGTTTLYVEDE----------------AASD----- 201 (570)
T ss_dssp CTTSCHHHHHHHHHHHTCSEEEECTTTTTS-------------SCSSEEEECCC--------------------------
T ss_pred CCCChHHHHHHHHHhcCCCEEEecchhhhc-------------ccCCcceeeecc----------------cccc-----
Confidence 999999999999999999999998753211 111111110000 0000
Q ss_pred CCCCCCCccCCCCCeEEEEecCCCCCCcceEEecchhhHHHHHHhhHhcCCCCCCEEEEecCccccchhhHHHHhhhcCc
Q 006121 344 RPNYYSPVYNPVDAVVNILFSSGTTGEPKAIPWTQLSSIRCTAEGWAHIDLKVGDVYCWPTNLGWVMGPVILFSSFLNGA 423 (660)
Q Consensus 344 ~~~~~~~~~~~~~~~a~i~~TSGSTG~PKgV~~sh~~l~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~l~~G~ 423 (660)
.+.........++++|||+|||||||+||||+++|+++.+.+.+ ...+++++++++++.+|++|+.+.+.++.+++.|+
T Consensus 202 ~~~~~~~~~~~~~d~a~i~~TSGTTG~PKgV~~th~~l~~~~~~-~~~~~~~~~d~~l~~~p~~~~~~~~~~~~~l~~G~ 280 (570)
T 4gr5_A 202 APAGNLATGVGPEDVACVMFTSGSTGRPKGVMSPHRALTGTYLG-QDYAGFGPDEVFLQCSPVSWDAFGLELFGALLFGA 280 (570)
T ss_dssp --CCCCCCCCCTTSEEEEECCSSCCSSCCCEEEEHHHHHHHHSS-CCSSCCSTTCEEEECSCTTSSTHHHHHHHHHTTTC
T ss_pred ccccccCCCCCCCCeEEEEECCcCCCCCeEEEEecHHHHHHHHh-hhhcCCCCCCEEEEecCccHHHHHHHHHHHHhcCC
Confidence 00111223457899999999999999999999999999877655 45668899999999999999999889999999999
Q ss_pred EEEEecC-CCChhhHHHHHHHcCCeEEeecHHHHHHHHhcCCCCCCCccCccEEEeecCCCChhhHHHHHhhCCCCceec
Q 006121 424 TLALYQG-SPLERSFGKFVQDAGVTVLGTVPSLVKAWRNTNCLEGLDWTKIRSFASTGETSNVDDDLWLSSKAWYNAIIE 502 (660)
Q Consensus 424 ~lv~~~~-~~~~~~l~~~i~~~~vt~l~~~P~~l~~l~~~~~~~~~~l~~lr~v~~gGe~l~~~~~~~~~~~~~~~~l~n 502 (660)
++++.+. ..++..+++.|+++++|++.++|++++.|++... .++++||.+++|||+++.++.+++.+.+++++++|
T Consensus 281 ~~v~~~~~~~~~~~~~~~i~~~~vt~~~~~P~~~~~l~~~~~---~~~~~lr~~~~gG~~l~~~~~~~~~~~~~~~~l~~ 357 (570)
T 4gr5_A 281 RCVLQSGQNPDPLEIGELVARHGVTMLQLSASLFNFLVDEVP---EAFEGVRYAITGGEPASVPHVAKARRDHPALRLGN 357 (570)
T ss_dssp EEEECSSSSCCHHHHHHHHHHHTCCEEEEEHHHHHHHHHHCG---GGGTTCSEEEEESSCCCHHHHHHHHHHCTTCEEEE
T ss_pred EEEEcCCccCCHHHHHHHHHHcCCcEEEecHHHHHHHHhhch---hhCCCceEEEEecccCCHHHHHHHHHhCCCcEEEE
Confidence 9999874 4688999999999999999999999999987642 35789999999999999999999998888899999
Q ss_pred cccccccccccccCCc---CCCCcccccCcCCCCceEEEEcCCCCcCCCCCCceeEEEE-e----ccccCCcccccCccc
Q 006121 503 SCGGTELSSAYIQGSL---LQPQAFGAFSTATMTAGLVILDECGVPYPDDQPCVGEVGL-F----PLYLGASDRLLNADH 574 (660)
Q Consensus 503 ~YG~TE~~~~~~~~~~---~~~~~~~~iG~p~~~~~~~vld~~~~~vp~G~~giGel~v-~----~~y~~~~~~~~~~~~ 574 (660)
.||+||++++.+.... .......++|+|++|++++|+|++++++|.|+. |||+| + .||++ +++.
T Consensus 358 ~YG~TE~~~~~~~~~~~~~~~~~~~~~iG~p~~~~~v~i~d~~~~~~~~G~~--GEl~v~g~~v~~GY~~------~~~~ 429 (570)
T 4gr5_A 358 GYGPAESMGFTTHHAVVAGDLSGTALPIGVPLAGKRAYVLDDDLKPAANGAL--GELYVAGAGLAHGYVS------RPAL 429 (570)
T ss_dssp EECCGGGCSCSEEEECCGGGTTSSSCCCBEECTTEEEEEECTTSCBCCTTCE--EEEEEEETTCCCEETT------CHHH
T ss_pred eechhhheeeeeeeeecccccCCCccccceeeCCCEEEEECCCCCCCCCCCc--EEEEEeecccchhcCC------Cchh
Confidence 9999999875443222 122345679999999999999999999999996 99999 4 45555 7889
Q ss_pred ccccccccccC--CCceeEeeCceEEEecCceEEEEeccCCccccCceeecchHHHHhhcCCCCceeeEEEEEeecC-cc
Q 006121 575 EEVYFRGMPMY--KGMCLRRHGDIIKRTVGGYIIVQGRADDTMNLGGIKALLLPLTFLSSPRSSFKCLHIYAWLYFH-KL 651 (660)
Q Consensus 575 t~~~f~~~p~~--~~~r~y~TGDl~~~~~dG~l~~~GR~dd~iki~G~rv~~~eIE~~L~~~~~V~~a~vv~~~~~~-~~ 651 (660)
|+++|..+|+. ++.+||||||+|++|+||+|+|+||+|||||++|+||+|.|||++|.+||+|++|+|+...+.. +.
T Consensus 430 t~~~f~~~~~~~~~~~~w~~TGDlg~~d~dG~l~~~GR~~d~Ik~~G~~v~p~eIE~~l~~~p~V~~a~Vv~~~~~~~~~ 509 (570)
T 4gr5_A 430 TAERFVADPFAGPGGERMYRTGDLARRRADGVLEYVGRADDQVKIRGFRVEPGEVEARLVGHPAVRQAAVLAQDSRLGDK 509 (570)
T ss_dssp HHHHEEECTTCCSSCCEEEEEEEEEEECTTSCEEEEEC------------------------------------------
T ss_pred hhcccccCCCCCCCCCEEEeCCCeEEECCCCeEEEEcccCCEEEECcEEeCHHHHHHHHhcCCCcceEEEEEeeCCCCCe
Confidence 99999988773 5678999999999999999999999999999999999999999999999999999998765443 44
Q ss_pred eeeeecc
Q 006121 652 ELIFYFS 658 (660)
Q Consensus 652 ~l~a~~~ 658 (660)
.+++|+.
T Consensus 510 ~~~a~vv 516 (570)
T 4gr5_A 510 QLVAYVV 516 (570)
T ss_dssp -------
T ss_pred EEEEEEE
Confidence 5666653
No 10
>1amu_A GRSA, gramicidin synthetase 1; peptide synthetase, adenylate forming; HET: PHE AMP; 1.90A {Brevibacillus brevis} SCOP: e.23.1.1
Probab=100.00 E-value=1.3e-70 Score=614.12 Aligned_cols=417 Identities=18% Similarity=0.176 Sum_probs=347.5
Q ss_pred cCCCCCCcEEEEEecCCCCCCCceeecHHHHHHHHHHHHHHHHhc-cCCCCEEEEEcCCCHHHHHHHHHHHHcCcEEEec
Q 006121 185 HRRKEDNTVAIVWREDRCDESAVNLMTYKELREQVMLVANALDTM-FSKGDAIAIDMPMTVRAVIIYLAIILAGYVVVSI 263 (660)
Q Consensus 185 ~a~~~pd~~Av~~~~~~~~~~~~~~lTY~eL~~~a~~lA~~L~~~-v~~gd~V~i~~~~s~~~vva~lA~lkaGa~~vpl 263 (660)
+++++|+++|+++.++ ++||+||+++++++|++|++. +++||+|+|+++|++++++++|||+++|++++|+
T Consensus 48 ~a~~~p~~~Al~~~~~--------~~Ty~eL~~~~~~lA~~L~~~Gv~~gd~V~i~~~n~~e~~~~~lA~~~~Gav~vpl 119 (563)
T 1amu_A 48 QVSKRPNNVAIVCENE--------QLTYHELNVKANQLARIFIEKGIGKDTLVGIMMEKSIDLFIGILAVLKAGGAYVPI 119 (563)
T ss_dssp HHHHCTTSEEEEETTE--------EEEHHHHHHHHHHHHHHHHHTTCCTTCEEEEECCSSHHHHHHHHHHHHTTCEEEEC
T ss_pred HHHHCCCCeEEEeCCc--------eecHHHHHHHHHHHHHHHHHcCCCCCCEEEEEeCCCHHHHHHHHHHHHhCCEEEEe
Confidence 3478999999998776 999999999999999999999 9999999999999999999999999999999999
Q ss_pred CCCCCHHHHHHHHHhcCeeEEEeecceeecCccccchhhHhccCC--CcEEEEcCCCCCCCCCCCCCCcchhhhhccCCC
Q 006121 264 ADSFAAREIATRLRVSKAKGIFTQDFILRGGRKFPLYSKVLGAAP--LKAIVLPAIGNDVGIPLREQDLSWKDFLSSVDY 341 (660)
Q Consensus 264 ~p~~p~~~l~~~l~~~~~~~il~~~~~~~~~~~~~~~~~~~~~~~--~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~ 341 (660)
+|.++.+++.+++++++++++|++..... ...... .....+.. . .+. . ...
T Consensus 120 ~~~~~~~~l~~il~~~~~~~li~~~~~~~----------~~~~~~~~~~~~~~~~--~-----------~~~---~-~~~ 172 (563)
T 1amu_A 120 DIEYPKERIQYILDDSQARMLLTQKHLVH----------LIHNIQFNGQVEIFEE--D-----------TIK---I-REG 172 (563)
T ss_dssp CTTSCHHHHHHHHHHHTCSEEEECGGGHH----------HHTTSCCCSEEEECCC--S-----------TTT---T-SCC
T ss_pred CCCCcHHHHHHHHHhcCCCEEEEcCchhh----------hhhhccccCceeeecc--h-----------hhc---c-ccC
Confidence 99999999999999999999999875321 111111 11111110 0 000 0 000
Q ss_pred CCCCCCCCCccCCCCCeEEEEecCCCCCCcceEEecchhhHHHHHHhhHhcCCCCCCEEEEecCccccchhhHHHHhhhc
Q 006121 342 HPRPNYYSPVYNPVDAVVNILFSSGTTGEPKAIPWTQLSSIRCTAEGWAHIDLKVGDVYCWPTNLGWVMGPVILFSSFLN 421 (660)
Q Consensus 342 ~~~~~~~~~~~~~~~~~a~i~~TSGSTG~PKgV~~sh~~l~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~l~~ 421 (660)
........++++|||+|||||||+||||+++|+++.+.+.+....++++++|++++.+|++|+.+++.++.+|+.
T Consensus 173 -----~~~~~~~~~~d~a~i~~TSGTTG~PKgV~~th~~l~~~~~~~~~~~~~~~~d~~l~~~p~~~~~~~~~~~~~l~~ 247 (563)
T 1amu_A 173 -----TNLHVPSKSTDLAYVIYTSGTTGNPKGTMLEHKGISNLKVFFENSLNVTEKDRIGQFASISFDASVWEMFMALLT 247 (563)
T ss_dssp -----SCCCCCCCTTSEEEEEEEC-----CEEEEEESHHHHHHHHHHHHTSCCCTTCEEEECSCTTSTHHHHHHHHHHTT
T ss_pred -----ccCCCCCCCCCeEEEEECCCCCCCCcEEEEehHHHHHHHHHHHHhcCCCCCCEEEEeCCccHHHHHHHHHHHHHC
Confidence 011123467899999999999999999999999999988888888899999999999999999999999999999
Q ss_pred CcEEEEecCC--CChhhHHHHHHHcCCeEEeecHHHHHHHHhcCCCCCCCccCccEEEeecCCCChhhHHHHHhhCCCCc
Q 006121 422 GATLALYQGS--PLERSFGKFVQDAGVTVLGTVPSLVKAWRNTNCLEGLDWTKIRSFASTGETSNVDDDLWLSSKAWYNA 499 (660)
Q Consensus 422 G~~lv~~~~~--~~~~~l~~~i~~~~vt~l~~~P~~l~~l~~~~~~~~~~l~~lr~v~~gGe~l~~~~~~~~~~~~~~~~ 499 (660)
|+++++.+.. .++..+++.|+++++|++.++|+++..|... .+++||.+++||+++++++.+++.+. ++
T Consensus 248 G~~~v~~~~~~~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~------~~~~lr~~~~gG~~l~~~~~~~~~~~---~~ 318 (563)
T 1amu_A 248 GASLYIILKDTINDFVKFEQYINQKEITVITLPPTYVVHLDPE------RILSIQTLITAGSATSPSLVNKWKEK---VT 318 (563)
T ss_dssp TCEEEECCHHHHTCHHHHHHHHHHTTCCEEEECHHHHTTSCTT------TCCSCSEEEEESSCCCHHHHHHHTTT---SE
T ss_pred CCEEEEcChHhhcCHHHHHHHHHHcCCcEEEeCHHHHHHHHhc------ccccccEEEEEEecCCHHHHHHHHhC---Ce
Confidence 9999998642 4788999999999999999999999877532 36899999999999999999888764 68
Q ss_pred eeccccccccccccccCCcC--CCCcccccCcCCCCceEEEEcCCCCcCCCCCCceeEEEE-e----ccccCCcccccCc
Q 006121 500 IIESCGGTELSSAYIQGSLL--QPQAFGAFSTATMTAGLVILDECGVPYPDDQPCVGEVGL-F----PLYLGASDRLLNA 572 (660)
Q Consensus 500 l~n~YG~TE~~~~~~~~~~~--~~~~~~~iG~p~~~~~~~vld~~~~~vp~G~~giGel~v-~----~~y~~~~~~~~~~ 572 (660)
++|.||+||++++++..... ......++|+|++|++++|+|++++++|.|+. |||+| + .||++ ++
T Consensus 319 ~~~~YG~TE~~~~~~~~~~~~~~~~~~~~vG~p~~~~~v~i~d~~~~~~~~g~~--GEl~v~g~~v~~GY~~------~p 390 (563)
T 1amu_A 319 YINAYGPTETTICATTWVATKETIGHSVPIGAPIQNTQIYIVDENLQLKSVGEA--GELCIGGEGLARGYWK------RP 390 (563)
T ss_dssp EEEEECCGGGSSCSEEEECCSSCCCSSCCCBEECTTEEEEEECTTSCBCCTTCE--EEEEEEETTCCCEETT------CH
T ss_pred EEEEECcCHHhHhheeeecccccCCCCCcccceeCCCEEEEECCCcCCCCCCCc--EEEEEechhhChhhCC------Cc
Confidence 99999999998754433221 22345689999999999999999999999996 99999 4 45555 78
Q ss_pred ccccccccccccCCCceeEeeCceEEEecCceEEEEeccCCccccCceeecchHHHHhhcCCCCceeeEEEEEeecC-cc
Q 006121 573 DHEEVYFRGMPMYKGMCLRRHGDIIKRTVGGYIIVQGRADDTMNLGGIKALLLPLTFLSSPRSSFKCLHIYAWLYFH-KL 651 (660)
Q Consensus 573 ~~t~~~f~~~p~~~~~r~y~TGDl~~~~~dG~l~~~GR~dd~iki~G~rv~~~eIE~~L~~~~~V~~a~vv~~~~~~-~~ 651 (660)
+.|++.|..+|+.+|++||+|||+|++|+||+|+|+||+|||||++|+||+|.|||++|.+||+|++|+|+...+.. +.
T Consensus 391 e~t~~~f~~~~~~~g~~w~~TGDlg~~d~dG~l~i~GR~~d~Ik~~G~~V~p~eIE~~l~~~p~V~~a~Vv~~~~~~~~~ 470 (563)
T 1amu_A 391 ELTSQKFVDNPFVPGEKLYKTGDQARWLSDGNIEYLGRIDNQVKIRGHRVELEEVESILLKHMYISETAVSVHKDHQEQP 470 (563)
T ss_dssp HHHHHHEEECSSSTTSEEEEEEEEEEECTTSCEEEEEEGGGEEEETTEEEEHHHHHHHHTTSTTEEEEEEEEEECTTSCE
T ss_pred hhhhhhcccCCCCCCCEEEecCCEEEEcCCCeEEEeccccCEEEECCEEeCHHHHHHHHHhCCCcceEEEEEeecCCCCe
Confidence 89999999888888889999999999999999999999999999999999999999999999999999998877654 45
Q ss_pred eeeeecc
Q 006121 652 ELIFYFS 658 (660)
Q Consensus 652 ~l~a~~~ 658 (660)
.+++|+.
T Consensus 471 ~~~a~vv 477 (563)
T 1amu_A 471 YLCAYFV 477 (563)
T ss_dssp EEEEEEE
T ss_pred EEEEEEE
Confidence 6788764
No 11
>1mdb_A 2,3-dihydroxybenzoate-AMP ligase; adenylation domain, peptide synthetase, antibiotic biosynthesis, siderophore formation; HET: AMP DBH; 2.15A {Bacillus subtilis} SCOP: e.23.1.1 PDB: 1md9_A* 1mdf_A
Probab=100.00 E-value=6.3e-71 Score=614.44 Aligned_cols=433 Identities=17% Similarity=0.149 Sum_probs=354.5
Q ss_pred cCCCCCCcEEEEEecCCCCCCCceeecHHHHHHHHHHHHHHHHhc-cCCCCEEEEEcCCCHHHHHHHHHHHHcCcEEEec
Q 006121 185 HRRKEDNTVAIVWREDRCDESAVNLMTYKELREQVMLVANALDTM-FSKGDAIAIDMPMTVRAVIIYLAIILAGYVVVSI 263 (660)
Q Consensus 185 ~a~~~pd~~Av~~~~~~~~~~~~~~lTY~eL~~~a~~lA~~L~~~-v~~gd~V~i~~~~s~~~vva~lA~lkaGa~~vpl 263 (660)
+++++|+++|+++.+. ++||+||+++++++|++|++. +++||+|+|+++|++++++++|||+++|++++|+
T Consensus 34 ~a~~~p~~~A~~~~~~--------~~Ty~eL~~~~~~lA~~L~~~Gv~~gd~V~i~~~~~~~~~~~~lA~~~~Ga~~vpl 105 (539)
T 1mdb_A 34 RAAKYGDRIAITCGNT--------HWSYRELDTRADRLAAGFQKLGIQQKDRVVVQLPNIKEFFEVIFALFRLGALPVFA 105 (539)
T ss_dssp HHHHHTTSEEEEETTE--------EEEHHHHHHHHHHHHHHHHHHTCCTTCEEEECCCSSHHHHHHHHHHHHHTCEEEEC
T ss_pred HHHHCCCCEEEEeCCC--------cccHHHHHHHHHHHHHHHHHcCCCCCCEEEEEcCCcHHHHHHHHHHHHcCeEEecC
Confidence 3478999999998776 999999999999999999999 9999999999999999999999999999999999
Q ss_pred CCCCCHHHHHHHHHhcCeeEEEeecceeecCccccchhhHhccCCC-cEEEEcCCCCCCCCCCCCCCcchhhhhccCCCC
Q 006121 264 ADSFAAREIATRLRVSKAKGIFTQDFILRGGRKFPLYSKVLGAAPL-KAIVLPAIGNDVGIPLREQDLSWKDFLSSVDYH 342 (660)
Q Consensus 264 ~p~~p~~~l~~~l~~~~~~~il~~~~~~~~~~~~~~~~~~~~~~~~-~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 342 (660)
+|.++.+++.+++++++++++|+++.... .........+....+. ..+++.... ..+.++......
T Consensus 106 ~~~~~~~~l~~~l~~~~~~~vi~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~-----------~~~~~~~~~~~~- 172 (539)
T 1mdb_A 106 LPSHRSSEITYFCEFAEAAAYIIPDAYSG-FDYRSLARQVQSKLPTLKNIIVAGEA-----------EEFLPLEDLHTE- 172 (539)
T ss_dssp CTTCCHHHHHHHHHHTTCSEEEEESEETT-EEHHHHHHHHHHHCTTCCCEEEESCC-----------TTSEEGGGCCCC-
T ss_pred CCCCCHHHHHHHHHhCCCCEEEecccccc-ccHHHHHHHHHhcCCCccEEEEcCCc-----------cchhhhhhcccc-
Confidence 99999999999999999999999875310 0000112222222222 112221110 012222221111
Q ss_pred CCCCCCCCccCCCCCeEEEEecCCCCCCcceEEecchhhHHHHHHhhHhcCCCCCCEEEEecCccccchhh--HHHHhhh
Q 006121 343 PRPNYYSPVYNPVDAVVNILFSSGTTGEPKAIPWTQLSSIRCTAEGWAHIDLKVGDVYCWPTNLGWVMGPV--ILFSSFL 420 (660)
Q Consensus 343 ~~~~~~~~~~~~~~~~a~i~~TSGSTG~PKgV~~sh~~l~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~--~~~~~l~ 420 (660)
........++++|||+|||||||+||||+++|+++.+.+.+....++++++|++++.+|++|++++. .++.+|+
T Consensus 173 ----~~~~~~~~~~d~a~i~~TSGTTG~PKgV~~th~~~~~~~~~~~~~~~~~~~d~~l~~~p~~h~~~~~~~~~~~~l~ 248 (539)
T 1mdb_A 173 ----PVKLPEVKSSDVAFLQLSGGSTGLSKLIPRTHDDYIYSLKRSVEVCWLDHSTVYLAALPMAHNYPLSSPGVLGVLY 248 (539)
T ss_dssp ----CCCCCCCCTTSEEEEEECCCSSSSCCEEEEEHHHHHHHHHHHHHHHTCCTTCEEEECSCTTSHHHHHSSHHHHHHH
T ss_pred ----ccccCCCCcCceEEEEeCCCcCCCCcEEEEehHHHHHHHHHHHHhhCCCCCCEEEEeecccccchhhHHHHHHHHH
Confidence 1112345679999999999999999999999999999988888888999999999999999998875 6899999
Q ss_pred cCcEEEEecCCCChhhHHHHHHHcCCeEEeecHHHHHHHHhcCCCCCCCccCccEEEeecCCCChhhHHHHHhhCCCCce
Q 006121 421 NGATLALYQGSPLERSFGKFVQDAGVTVLGTVPSLVKAWRNTNCLEGLDWTKIRSFASTGETSNVDDDLWLSSKAWYNAI 500 (660)
Q Consensus 421 ~G~~lv~~~~~~~~~~l~~~i~~~~vt~l~~~P~~l~~l~~~~~~~~~~l~~lr~v~~gGe~l~~~~~~~~~~~~~~~~l 500 (660)
.|+++++.+ .+++..+++.|+++++|+++++|+++..|++.......++++||.+++|||++++++.+++.+.+ ++++
T Consensus 249 ~G~~~v~~~-~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~l~~lr~~~~gG~~l~~~~~~~~~~~~-~~~~ 326 (539)
T 1mdb_A 249 AGGRVVLSP-SPSPDDAFPLIEREKVTITALVPPLAMVWMDAASSRRDDLSSLQVLQVGGAKFSAEAARRVKAVF-GCTL 326 (539)
T ss_dssp TTCEEEECS-SSSHHHHHHHHHHHTCSEEEECHHHHHHHHHHHHHCCCCCTTCCEEEEESSCCCHHHHTTHHHHT-CSEE
T ss_pred hCCEEEECC-CCCHHHHHHHHHHcCCeEEEccHHHHHHHHhCccccCCCccceeEEEEcCCCCCHHHHHHHHHHh-CCcE
Confidence 999999987 47899999999999999999999999999876444456789999999999999999999988877 4899
Q ss_pred eccccccccccccccCCcCCCCcccccCcCCCCc-eEEEEcCCCCcCCCCCCceeEEEE-e----ccccCCcccccCccc
Q 006121 501 IESCGGTELSSAYIQGSLLQPQAFGAFSTATMTA-GLVILDECGVPYPDDQPCVGEVGL-F----PLYLGASDRLLNADH 574 (660)
Q Consensus 501 ~n~YG~TE~~~~~~~~~~~~~~~~~~iG~p~~~~-~~~vld~~~~~vp~G~~giGel~v-~----~~y~~~~~~~~~~~~ 574 (660)
+|.||+||+++.+...........+++|+|+++. +++|+|++++++|.|+. |||+| + .||++ +++.
T Consensus 327 ~~~YG~TE~~~~~~~~~~~~~~~~~~~G~p~~~~~~~~i~d~~~~~~~~g~~--GEl~v~g~~v~~GY~~------~~~~ 398 (539)
T 1mdb_A 327 QQVFGMAEGLVNYTRLDDPEEIIVNTQGKPMSPYDESRVWDDHDRDVKPGET--GHLLTRGPYTIRGYYK------AEEH 398 (539)
T ss_dssp EEEEECTTSCEEECCTTSCHHHHHHCCCEESSTTCEEEEECTTSCBCCTTCC--EEEEEECTTSCSSCTT------CHHH
T ss_pred EEEEcCCCCcccccCCCCcHHhcCCCCCcccCCCceEEEECCCCCCCcCCCc--ceEEeeCcccchhhcC------Chhh
Confidence 9999999976543321111122346899999764 89999999999999997 99999 3 45555 7888
Q ss_pred ccccccccccCCCceeEeeCceEEEecCceEEEEeccCCccccCceeecchHHHHhhcCCCCceeeEEEEEeecC-ccee
Q 006121 575 EEVYFRGMPMYKGMCLRRHGDIIKRTVGGYIIVQGRADDTMNLGGIKALLLPLTFLSSPRSSFKCLHIYAWLYFH-KLEL 653 (660)
Q Consensus 575 t~~~f~~~p~~~~~r~y~TGDl~~~~~dG~l~~~GR~dd~iki~G~rv~~~eIE~~L~~~~~V~~a~vv~~~~~~-~~~l 653 (660)
|++.|..++ ||+|||+|++|+||+|+|+||+|||||++|+||+|.|||++|.+||+|++|+|+...+.. ++.+
T Consensus 399 t~~~f~~~g------~~~TGDlg~~~~dG~l~~~GR~dd~ik~~G~~v~p~eIE~~l~~~p~V~~a~vv~~~~~~~g~~~ 472 (539)
T 1mdb_A 399 NAASFTEDG------FYRTGDIVRLTRDGYIVVEGRAKDQINRGGEKVAAEEVENHLLAHPAVHDAAMVSMPDQFLGERS 472 (539)
T ss_dssp HHHHBCTTS------CEEEEEEEEECTTSCEEEEEEGGGCEECSSCEECHHHHHHHHTTSTTEEEEEEEEEEETTTEEEE
T ss_pred hhhhccCCC------CeecCceEEECCCCcEEEeccccceEEECCEEECHHHHHHHHHhCCCcceEEEEeccccccCceE
Confidence 999997543 999999999999999999999999999999999999999999999999999999877654 4567
Q ss_pred eeecc
Q 006121 654 IFYFS 658 (660)
Q Consensus 654 ~a~~~ 658 (660)
++|+.
T Consensus 473 ~a~vv 477 (539)
T 1mdb_A 473 CVFII 477 (539)
T ss_dssp EEEEE
T ss_pred EEEEE
Confidence 78764
No 12
>4fuq_A Malonyl COA synthetase; ANL superfamily, methylma malonate, ligase; HET: MSE; 1.70A {Rhodopseudomonas palustris} PDB: 4fut_A* 4gxr_A* 4gxq_A*
Probab=100.00 E-value=4.6e-70 Score=602.27 Aligned_cols=428 Identities=18% Similarity=0.156 Sum_probs=351.6
Q ss_pred CCCCCCcEEEEEecCCCCCCCceeecHHHHHHHHHHHHHHHHhc-cCCCCEEEEEcCCCHHHHHHHHHHHHcCcEEEecC
Q 006121 186 RRKEDNTVAIVWREDRCDESAVNLMTYKELREQVMLVANALDTM-FSKGDAIAIDMPMTVRAVIIYLAIILAGYVVVSIA 264 (660)
Q Consensus 186 a~~~pd~~Av~~~~~~~~~~~~~~lTY~eL~~~a~~lA~~L~~~-v~~gd~V~i~~~~s~~~vva~lA~lkaGa~~vpl~ 264 (660)
++++|+++|+...... .+++||+||+++++++|++|+++ +++||+|+|+++|++++++++|||+|+|++++|+|
T Consensus 10 a~~~p~~~a~~~~~~~-----~~~~Ty~eL~~~~~~lA~~L~~~Gv~~gd~V~i~~~~~~~~~~~~lA~~~~Ga~~vpl~ 84 (503)
T 4fuq_A 10 FDKLDDPHKLAIETAA-----GDKISYAELVARAGRVANVLVARGLQVGDRVAAQTEKSVEALVLYLATVRAGGVYLPLN 84 (503)
T ss_dssp HSCCSCTTSEEEEETT-----CCEEEHHHHHHHHHHHHHHHHHTTCCTTCEEEEECCSCHHHHHHHHHHHHTTCEEEECC
T ss_pred HHhCCCCceEEEecCC-----CcEEEHHHHHHHHHHHHHHHHHcCCCCCCEEEEECCCCHHHHHHHHHHHHcCcEEEecC
Confidence 3678888887753210 02899999999999999999999 99999999999999999999999999999999999
Q ss_pred CCCCHHHHHHHHHhcCeeEEEeecceeecCccccchhhHhccCCCcEEEEcCCCCCCCCCCCCCCcchhhhhccCCCCCC
Q 006121 265 DSFAAREIATRLRVSKAKGIFTQDFILRGGRKFPLYSKVLGAAPLKAIVLPAIGNDVGIPLREQDLSWKDFLSSVDYHPR 344 (660)
Q Consensus 265 p~~p~~~l~~~l~~~~~~~il~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 344 (660)
|.+|.+++.+++++++++++|++..... ....+..........+.... ...+.+.......
T Consensus 85 ~~~~~~~l~~il~~~~~~~vi~~~~~~~------~~~~~~~~~~~~~~~~~~~~----------~~~~~~~~~~~~~--- 145 (503)
T 4fuq_A 85 TAYTLHELDYFITDAEPKIVVCDPSKRD------GIAAIAAKVGATVETLGPDG----------RGSLTDAAAGASE--- 145 (503)
T ss_dssp TTCCHHHHHHHHHHHCCSEEEECGGGTT------TTHHHHHHHTCEEEECCTTS----------CSHHHHHHHTSCS---
T ss_pred CCCCHHHHHHHHHhcCCcEEEECchhhH------HHHHHHhhcCceEEEecCCc----------ccccchhhhcCCC---
Confidence 9999999999999999999999975431 22222222222222221110 1112222211111
Q ss_pred CCCCCCccCCCCCeEEEEecCCCCCCcceEEecchhhHHHHHHhhHhcCCCCCCEEEEecCccccchhh-HHHHhhhcCc
Q 006121 345 PNYYSPVYNPVDAVVNILFSSGTTGEPKAIPWTQLSSIRCTAEGWAHIDLKVGDVYCWPTNLGWVMGPV-ILFSSFLNGA 423 (660)
Q Consensus 345 ~~~~~~~~~~~~~~a~i~~TSGSTG~PKgV~~sh~~l~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~-~~~~~l~~G~ 423 (660)
........++++|||+|||||||+||||+++|+++.+.+.+....++++++|++++.+|++|+.+++ .++.+++.|+
T Consensus 146 --~~~~~~~~~~d~a~i~~TSGTTG~PKgV~~sh~~l~~~~~~~~~~~~~~~~d~~~~~~p~~~~~g~~~~~~~~l~~g~ 223 (503)
T 4fuq_A 146 --AFATIDRGADDLAAILYTSGTTGRSKGAMLSHDNLASNSLTLVDYWRFTPDDVLIHALPIYHTHGLFVASNVTLFARG 223 (503)
T ss_dssp --CCCCCCCCTTSEEEEEECC--CCSCCEEEEEHHHHHHHHHHHHHHTTCCTTCEEEECSCSSSHCCCCCCHHHHHHTTC
T ss_pred --CcCcCCCCCCCeEEEEECCCcccCCeEEEEeHHHHHHHHHHHHHHhCCCCCCEEEEeCChHHHHHHHHHHHHHHHhCC
Confidence 1222345689999999999999999999999999999999888899999999999999999999874 4778999999
Q ss_pred EEEEecCCCChhhHHHHHHHcCCeEEeecHHHHHHHHhcCCCCCCCccCccEEEeecCCCChhhHHHHHhhCCCCceecc
Q 006121 424 TLALYQGSPLERSFGKFVQDAGVTVLGTVPSLVKAWRNTNCLEGLDWTKIRSFASTGETSNVDDDLWLSSKAWYNAIIES 503 (660)
Q Consensus 424 ~lv~~~~~~~~~~l~~~i~~~~vt~l~~~P~~l~~l~~~~~~~~~~l~~lr~v~~gGe~l~~~~~~~~~~~~~~~~l~n~ 503 (660)
++++.+ .+++..+++.++ ++|+++++|+++..|++........++++|.+++|||++++++.+++.+.++ ++++|.
T Consensus 224 ~~~~~~-~~~~~~~~~~i~--~~t~~~~~P~~~~~l~~~~~~~~~~~~~lr~~~~gg~~l~~~~~~~~~~~~~-~~~~~~ 299 (503)
T 4fuq_A 224 SMIFLP-KFDPDKILDLMA--RATVLMGVPTFYTRLLQSPRLTKETTGHMRLFISGSAPLLADTHREWSAKTG-HAVLER 299 (503)
T ss_dssp EEEECS-SCCHHHHHHHHT--TCCEEEECHHHHHHHHTCTTCSTTTTTTCCEEEECSSCCCHHHHHHHHHHHS-CCEEEC
T ss_pred EEEEcC-CCCHHHHHHHHh--hcCEEEEHHHHHHHHHhCCCccccchhhcEEEEECCCCCCHHHHHHHHHHhC-CCccce
Confidence 999987 578999999998 8999999999999999887666677899999999999999999999988764 789999
Q ss_pred ccccccccccccCCcCCCCcccccCcCCCCceEEEEc-CCCCcCCCCCCceeEEEE-----eccccCCcccccCcccccc
Q 006121 504 CGGTELSSAYIQGSLLQPQAFGAFSTATMTAGLVILD-ECGVPYPDDQPCVGEVGL-----FPLYLGASDRLLNADHEEV 577 (660)
Q Consensus 504 YG~TE~~~~~~~~~~~~~~~~~~iG~p~~~~~~~vld-~~~~~vp~G~~giGel~v-----~~~y~~~~~~~~~~~~t~~ 577 (660)
||+||++..++ .........+++|+|++|++++|+| ++|+++|.|+. |||+| +.||++ +++.|++
T Consensus 300 YG~TE~~~~~~-~~~~~~~~~~~~G~p~~~~~~~i~d~~~g~~~~~g~~--GEl~v~g~~v~~GY~~------~~~~t~~ 370 (503)
T 4fuq_A 300 YGMTETNMNTS-NPYDGDRVPGAVGPALPGVSARVTDPETGKELPRGDI--GMIEVKGPNVFKGYWR------MPEKTKS 370 (503)
T ss_dssp CEETTTEECBC-CCSSSCCCTTEEEEBCTTCEEEEECTTTCCBCCTTCC--EEEEEESTTSCCCBTT------CHHHHHH
T ss_pred EcccccCcccc-cCCCCCCcCCccccCCCCeEEEEEECCCCCCCcCCCc--eEEEEECCchhhhhcC------ChhhhHh
Confidence 99999987533 2233344567899999999999999 88999999997 99999 345555 7889999
Q ss_pred cccccccCCCceeEeeCceEEEecCceEEEEeccCCccccCceeecchHHHHhhcCCCCceeeEEEEEeecC-cceeeee
Q 006121 578 YFRGMPMYKGMCLRRHGDIIKRTVGGYIIVQGRADDTMNLGGIKALLLPLTFLSSPRSSFKCLHIYAWLYFH-KLELIFY 656 (660)
Q Consensus 578 ~f~~~p~~~~~r~y~TGDl~~~~~dG~l~~~GR~dd~iki~G~rv~~~eIE~~L~~~~~V~~a~vv~~~~~~-~~~l~a~ 656 (660)
.|..++ ||+|||+|++++||+|+|+||+|||||++|+||+|.|||++|.+||+|++++|+...+.. +..+++|
T Consensus 371 ~f~~~g------~~~TGDl~~~~~dG~l~~~GR~dd~ik~~G~~v~p~eIE~~l~~~p~V~~a~vv~~~~~~~~~~~~a~ 444 (503)
T 4fuq_A 371 EFRDDG------FFITGDLGKIDERGYVHILGRGKDLVITGGFNVYPKEIESEIDAMPGVVESAVIGVPHADFGEGVTAV 444 (503)
T ss_dssp TBCTTS------CEEEEEEEEECTTCEEEECCSSTTCEEETTEEECHHHHHHHHHTSTTEEEEEEEEEEETTTEEEEEEE
T ss_pred hhCCCC------CeEcceeEEEcCCCcEEEEecCCCEEEECCEEECHHHHHHHHHhCCCeeEEEEEEeEchhcCceeEEE
Confidence 997543 999999999999999999999999999999999999999999999999999999877655 4556676
Q ss_pred cc
Q 006121 657 FS 658 (660)
Q Consensus 657 ~~ 658 (660)
+.
T Consensus 445 v~ 446 (503)
T 4fuq_A 445 VV 446 (503)
T ss_dssp EE
T ss_pred EE
Confidence 54
No 13
>3tsy_A Fusion protein 4-coumarate--COA ligase 1, resvera synthase; transferase; 3.10A {Arabidospis thaliana}
Probab=100.00 E-value=6e-70 Score=647.49 Aligned_cols=501 Identities=16% Similarity=0.154 Sum_probs=328.9
Q ss_pred cCCCCccHHHHHHHHhhCHHHHHHHHHhhcccceeccceecccCCCCCCCCCCcCCCCccchhhhcccccCcCCCCCCcE
Q 006121 114 YKDPITSFRLFQKFTVEHPEAYWEIALKEISVVFREAPKCILDRTDKSKHGGTWLPGSVLNIAECCLLPSNHRRKEDNTV 193 (660)
Q Consensus 114 y~~~~~~~~lf~~~ti~~~~~~~~~~l~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~a~~~pd~~ 193 (660)
|++ ++.+..|+++|..++.++++.+...+..+.....-... ..........+. ...+. .+++++||++
T Consensus 11 ~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~p~~~tl-~~~l~--~~a~~~pd~~ 78 (979)
T 3tsy_A 11 SSG-----LVPRGSHMARMAPQEQAVSQVMEKQSNNNNSDVIFRSK----LPDIYIPNHLSL-HDYIF--QNISEFATKP 78 (979)
T ss_dssp ---------------------------------------CCCBCCS----SCCCCCCTTSCH-HHHHT--TTGGGTTTSE
T ss_pred ccC-----cccCcchhhhhhhHHHHHHHhhhhcccCCCCCceeecC----CCCCCCCCCCCH-HHHHH--HHHHhCCCCe
Confidence 666 99999999999999999998775443333222211110 000000011111 12222 3458899999
Q ss_pred EEEEecCCCCCCCceeecHHHHHHHHHHHHHHHHhc-cCCCCEEEEEcCCCHHHHHHHHHHHHcCcEEEecCCCCCHHHH
Q 006121 194 AIVWREDRCDESAVNLMTYKELREQVMLVANALDTM-FSKGDAIAIDMPMTVRAVIIYLAIILAGYVVVSIADSFAAREI 272 (660)
Q Consensus 194 Av~~~~~~~~~~~~~~lTY~eL~~~a~~lA~~L~~~-v~~gd~V~i~~~~s~~~vva~lA~lkaGa~~vpl~p~~p~~~l 272 (660)
|+++...+ +++||+||+++++++|++|++. +++||+|+|+++|++++++++|||+|+|+++||++|.+|++++
T Consensus 79 Al~~~~~~------~~~TY~eL~~~~~~lA~~L~~~Gv~~gd~V~i~~~ns~e~~v~~lA~~~~Ga~~vpl~~~~~~~~l 152 (979)
T 3tsy_A 79 CLINGPTG------HVYTYSDVHVISRQIAANFHKLGVNQNDVVMLLLPNCPEFVLSFLAASFRGATATAANPFFTPAEI 152 (979)
T ss_dssp EEEETTTC------CEEEHHHHHHHHHHHHHHHHHTTCCTTCEEEEECSSCHHHHHHHHHHHHHTCEEEEECTTSCHHHH
T ss_pred EEEECCCC------cEEEHHHHHHHHHHHHHHHHHcCCCCcCEEEEEeCCCHHHHHHHHHHHHcCCEEEeeCCCCCHHHH
Confidence 99986321 2899999999999999999999 9999999999999999999999999999999999999999999
Q ss_pred HHHHHhcCeeEEEeecceeecCccccchhhHhccCCCcEEEEcCCCCCCCCCCCCCCcchhhhhccCCCCCCCCCCCCcc
Q 006121 273 ATRLRVSKAKGIFTQDFILRGGRKFPLYSKVLGAAPLKAIVLPAIGNDVGIPLREQDLSWKDFLSSVDYHPRPNYYSPVY 352 (660)
Q Consensus 273 ~~~l~~~~~~~il~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 352 (660)
.++++++++++||++.... +.+..+.......++.+.... ......+...+.++...... .....+...
T Consensus 153 ~~~l~~~~~~~vi~~~~~~------~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~ 221 (979)
T 3tsy_A 153 AKQAKASNTKLIITEARYV------DKIKPLQNDDGVVIVCIDDNE---SVPIPEGCLRFTELTQSTTE--ASEVIDSVE 221 (979)
T ss_dssp HHHHHHHTEEEEEECSTTT------TTSHHHHHTSCCEEEECCCCT---TSCCCTTEEEGGGTSSCCSG--GGGGSCCSC
T ss_pred HHHHHHcCCeEEEEChHHH------HHHHHHhhcCCceEEEeCCcc---cccCCcccccHHHHhhcccc--ccccCCcCC
Confidence 9999999999999997643 222333322222333332111 11122334455555443221 011122345
Q ss_pred CCCCCeEEEEecCCCCCCcceEEecchhhHHHHHHhhH----hcCCCCCCEEEEecCccccchh-hHHHHhhhcCcEEEE
Q 006121 353 NPVDAVVNILFSSGTTGEPKAIPWTQLSSIRCTAEGWA----HIDLKVGDVYCWPTNLGWVMGP-VILFSSFLNGATLAL 427 (660)
Q Consensus 353 ~~~~~~a~i~~TSGSTG~PKgV~~sh~~l~~~~~~~~~----~~~~~~~~~~l~~~~~~~~~~~-~~~~~~l~~G~~lv~ 427 (660)
..++++|||+|||||||+||||+++|+++++.+.+... .+.+.+++++++.+|++|+.++ ..++.+|..|+++++
T Consensus 222 ~~~~d~a~i~~TSGTTG~PKgV~~sh~~l~~~~~~~~~~~~~~~~~~~~d~~l~~~p~~h~~~~~~~~~~~l~~G~~~v~ 301 (979)
T 3tsy_A 222 ISPDDVVALPYSSGTTGLPKGVMLTHKGLVTSVAQQVDGENPNLYFHSDDVILCVLPMFHIYALNSIMLCGLRVGAAILI 301 (979)
T ss_dssp CCTTSEEECCBCCCSSSSCCBEEEEHHHHHHHHHHHHCSSSCSSCCCSSCEEEECSCSSSHHHHHHTHHHHHHHTCEEEE
T ss_pred CCccceEEEEeCCCCCCCCeEEEechHHHHHHHHHHHHhhcccccCCCCCEEEEECchHHHHHHHHHHHHHHhcCcEEEE
Confidence 67899999999999999999999999999887765543 4568899999999999999998 457889999999999
Q ss_pred ecCCCChhhHHHHHHHcCCeEEeecHHHHHHHHhcCCCCCCCccCccEEEeecCCCChhhHHHHHhhCCCCceecccccc
Q 006121 428 YQGSPLERSFGKFVQDAGVTVLGTVPSLVKAWRNTNCLEGLDWTKIRSFASTGETSNVDDDLWLSSKAWYNAIIESCGGT 507 (660)
Q Consensus 428 ~~~~~~~~~l~~~i~~~~vt~l~~~P~~l~~l~~~~~~~~~~l~~lr~v~~gGe~l~~~~~~~~~~~~~~~~l~n~YG~T 507 (660)
.+ .+++..+++.|+++++|++.++|+++..|++.......++++||.+++|||++++++.+++.+.+++++++|.||+|
T Consensus 302 ~~-~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~l~~lr~~~~gg~~l~~~~~~~~~~~~~~~~l~~~YG~T 380 (979)
T 3tsy_A 302 MP-KFEINLLLELIQRCKVTVAPMVPPIVLAIAKSSETEKYDLSSIRVVKSGAAPLGKELEDAVNAKFPNAKLGQGYGMT 380 (979)
T ss_dssp CS-SCCHHHHHHHHHHHTCCEEEECHHHHHHHHHCGGGGTSCCTTCCEEEESSCCCCSSHHHHHHHHCTTCEEEECEECG
T ss_pred eC-CCCHHHHHHHHHHhCCeEEEcHHHHHHHHHhCccccCCCccceEEEEEcCCCCCHHHHHHHHHHCCCCeEEeeechh
Confidence 87 56889999999999999999999999999988766677899999999999999999999999998889999999999
Q ss_pred ccccccccCC----cCCCCcccccCcCCCCceEEEEc-CCCCcCCCCCCceeEEEE-----eccccCCcccccCcccccc
Q 006121 508 ELSSAYIQGS----LLQPQAFGAFSTATMTAGLVILD-ECGVPYPDDQPCVGEVGL-----FPLYLGASDRLLNADHEEV 577 (660)
Q Consensus 508 E~~~~~~~~~----~~~~~~~~~iG~p~~~~~~~vld-~~~~~vp~G~~giGel~v-----~~~y~~~~~~~~~~~~t~~ 577 (660)
|++.+++... .......+++|+|++|++++|+| ++++++|.|++ |||+| +.||++ +++.|++
T Consensus 381 E~~~~~~~~~~~~~~~~~~~~~~~G~p~~~~~~~i~d~~~~~~~~~g~~--GEl~i~g~~v~~GY~~------~p~~t~~ 452 (979)
T 3tsy_A 381 EAGPVLAMSLGFAKEPFPVKSGACGTVVRNAEMKIVDPDTGDSLSRNQP--GEICIRGHQIMKGYLN------NPAATAE 452 (979)
T ss_dssp GGCSEEEECGGGSSSCCCCCTTCCCEECSSCEEEEECTTSCCBCCTTCC--EEEEEESTTSCSEETT------CHHHHHH
T ss_pred hhhHHHHhCCCCCCCccccCCCCcCcccCCcEEEEEeCCCCCCCCCCCc--cEEEEECCCccccccC------Chhhhhh
Confidence 9986544321 12234567899999999999999 56999999997 99999 345665 7888999
Q ss_pred cccccccCCCceeEeeCceEEEecCceEEEEeccCCccccCceeecchHHHHhhcCCCCceeeEEEEEeecC-cceeeee
Q 006121 578 YFRGMPMYKGMCLRRHGDIIKRTVGGYIIVQGRADDTMNLGGIKALLLPLTFLSSPRSSFKCLHIYAWLYFH-KLELIFY 656 (660)
Q Consensus 578 ~f~~~p~~~~~r~y~TGDl~~~~~dG~l~~~GR~dd~iki~G~rv~~~eIE~~L~~~~~V~~a~vv~~~~~~-~~~l~a~ 656 (660)
.|..++ ||+|||+|++++||+|+|+||+|||||++|+||+|.|||++|.+||+|++++|+...+.. +..+++|
T Consensus 453 ~f~~~g------~~~TGDl~~~~~dG~l~~~GR~dd~ik~~G~~v~~~eIE~~l~~~p~V~~~~Vv~~~~~~~g~~~~a~ 526 (979)
T 3tsy_A 453 TIDKDG------WLHTGDIGLIDDDDELFIVDRLKELIKYKGFQVAPAELEALLIGHPDITDVAVVAMKEEAAGEVPVAF 526 (979)
T ss_dssp HBCTTS------CEEEEEEEEECTTSCEEEEEESCC--------------------------------------------
T ss_pred hccCCC------cEEcCCEEEEcCCceEEEecCCCCEEEECCEEECHHHHHHHHHhCCCcceEEEEEecccCCCcEEEEE
Confidence 886443 999999999999999999999999999999999999999999999999999998766543 4456666
Q ss_pred cc
Q 006121 657 FS 658 (660)
Q Consensus 657 ~~ 658 (660)
+.
T Consensus 527 vv 528 (979)
T 3tsy_A 527 VV 528 (979)
T ss_dssp --
T ss_pred EE
Confidence 53
No 14
>3r44_A Fatty acyl COA synthetase FADD13 (fatty-acyl-COA synthetase); ligase; HET: HIS; 1.80A {Mycobacterium tuberculosis} PDB: 3t5c_A 3t5b_A
Probab=100.00 E-value=2e-70 Score=607.35 Aligned_cols=425 Identities=20% Similarity=0.153 Sum_probs=350.9
Q ss_pred cCCCCCCcEEEEEecCCCCCCCceeecHHHHHHHHHHHHHHHHhc-cCCCCEEEEEcCCCHHHHHHHHHHHHcCcEEEec
Q 006121 185 HRRKEDNTVAIVWREDRCDESAVNLMTYKELREQVMLVANALDTM-FSKGDAIAIDMPMTVRAVIIYLAIILAGYVVVSI 263 (660)
Q Consensus 185 ~a~~~pd~~Av~~~~~~~~~~~~~~lTY~eL~~~a~~lA~~L~~~-v~~gd~V~i~~~~s~~~vva~lA~lkaGa~~vpl 263 (660)
+++++|+++|+++.+. ..++||+||+++++++|++|++. +++||+|+|+++|++++++++|||+++|+++|||
T Consensus 25 ~a~~~p~~~A~~~~~~------~~~~Ty~eL~~~~~~lA~~L~~~Gv~~gd~V~i~~~~~~~~~~~~lA~~~~G~~~vpl 98 (517)
T 3r44_A 25 RATVSPRLQAYVEPST------DVRMTYAQMNALANRCADVLTALGIAKGDRVALLMPNSVEFCCLFYGAAKLGAVAVPI 98 (517)
T ss_dssp HHHHSTTSEEEEEGGG------TEEEEHHHHHHHHHHHHHHHHHTTCCTTCEEEEECCSSHHHHHHHHHHHHHTCEEEEC
T ss_pred HHHhCCCCeEEEeCCc------CceeeHHHHHHHHHHHHHHHHHcCCCCcCEEEEEcCCCHHHHHHHHHHHHhCcEEEec
Confidence 3478999999998654 23899999999999999999999 9999999999999999999999999999999999
Q ss_pred CCCCCHHHHHHHHHhcCeeEEEeecceeecCccccchhhHhccCCC--cEEEEcCCCCCCCCCCCCCCcchhhhhccCCC
Q 006121 264 ADSFAAREIATRLRVSKAKGIFTQDFILRGGRKFPLYSKVLGAAPL--KAIVLPAIGNDVGIPLREQDLSWKDFLSSVDY 341 (660)
Q Consensus 264 ~p~~p~~~l~~~l~~~~~~~il~~~~~~~~~~~~~~~~~~~~~~~~--~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~ 341 (660)
+|.+|.+++.+++++++++++|++.... +....+...... ..+.+. ....+.+.......
T Consensus 99 ~~~~~~~~l~~~l~~~~~~~vi~~~~~~------~~~~~~~~~~~~~~~~~~~~------------~~~~~~~~~~~~~~ 160 (517)
T 3r44_A 99 NTRLAAPEVSFILSDSGSKVVIYGAPSA------PVIDAIRAQADPPGTVTDWI------------GADSLAERLRSAAA 160 (517)
T ss_dssp CTTSCHHHHHHHHHHHTCSEEEECGGGH------HHHHHHHHSSSCCTTCCEEE------------EHHHHHHHHHHCCC
T ss_pred CcccCHHHHHHHHHhcCceEEEECCchH------HHHHHHHhccCCccEEEEcc------------CcccHHHHhhccCc
Confidence 9999999999999999999999987532 122222211111 000000 01123333332221
Q ss_pred CCCCCCCCCccCCCCCeEEEEecCCCCCCcceEEecchhhHHHHHHhhHhcCCCCCCEEEEecCccccchhhHHHHhhhc
Q 006121 342 HPRPNYYSPVYNPVDAVVNILFSSGTTGEPKAIPWTQLSSIRCTAEGWAHIDLKVGDVYCWPTNLGWVMGPVILFSSFLN 421 (660)
Q Consensus 342 ~~~~~~~~~~~~~~~~~a~i~~TSGSTG~PKgV~~sh~~l~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~l~~ 421 (660)
..+.....++++|||+|||||||+||||+++|+++.+.+.+....++++++|++++.+|++|+.++..++.+++.
T Consensus 161 -----~~~~~~~~~~d~a~i~~TSGTTG~PKgV~~sh~~l~~~~~~~~~~~~~~~~d~~l~~~p~~~~~~~~~~~~~~~~ 235 (517)
T 3r44_A 161 -----DEPAVECGGDDNLFIMYTSGTTGHPKGVVHTHESVHSAASSWASTIDVRYRDRLLLPLPMFHVAALTTVIFSAMR 235 (517)
T ss_dssp -----CCCCCCCCTTSEEEEEEECC---CCEEEEEEHHHHHHHHHHHHHHSCCCTTCEEEECSCTTSHHHHHHHHHHHHH
T ss_pred -----CCCCCCCCCCCeEEEEECCcccccCceeeeeHHHHHHHHHHHHHhcCCCCCCEEEEeCchHHHHHHHHHHHHHhc
Confidence 122344578999999999999999999999999999999888888999999999999999999999876677779
Q ss_pred CcEEEEecCCCChhhHHHHHHHcCCeEEeecHHHHHHHHhcCCCCCCCccCccEEEeecCCCChhhHHHHHhhCCCCcee
Q 006121 422 GATLALYQGSPLERSFGKFVQDAGVTVLGTVPSLVKAWRNTNCLEGLDWTKIRSFASTGETSNVDDDLWLSSKAWYNAII 501 (660)
Q Consensus 422 G~~lv~~~~~~~~~~l~~~i~~~~vt~l~~~P~~l~~l~~~~~~~~~~l~~lr~v~~gGe~l~~~~~~~~~~~~~~~~l~ 501 (660)
|+++++.+ .+++..+++.|+++++|++.++|++++.|.+.......++++||.+++|||++++++.+++.+. +++++
T Consensus 236 G~~~v~~~-~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~~~~lr~i~~gGe~l~~~~~~~~~~~--~~~~~ 312 (517)
T 3r44_A 236 GVTLISMP-QFDATKVWSLIVEERVCIGGAVPAILNFMRQVPEFAELDAPDFRYFITGGAPMPEALIKIYAAK--NIEVV 312 (517)
T ss_dssp TCEEEECS-SCCHHHHHHHHHHTTCCEEEECHHHHHHHHHSHHHHHCCCTTCCEEEECSSCCCHHHHHHHHHT--TCEEE
T ss_pred CeEEEEeC-CCCHHHHHHHHHHhCCeEEEeHHHHHHHHHhCcccccCCCCcccEEEECCCCCCHHHHHHHHhc--CCcEE
Confidence 99999987 5789999999999999999999999999987654445678899999999999999999998876 68999
Q ss_pred ccccccccccccccCCcC-CCCcccccCcCCCCceEEEEcCCCCcCCCCCCceeEEEE-e----ccccCCcccccCcccc
Q 006121 502 ESCGGTELSSAYIQGSLL-QPQAFGAFSTATMTAGLVILDECGVPYPDDQPCVGEVGL-F----PLYLGASDRLLNADHE 575 (660)
Q Consensus 502 n~YG~TE~~~~~~~~~~~-~~~~~~~iG~p~~~~~~~vld~~~~~vp~G~~giGel~v-~----~~y~~~~~~~~~~~~t 575 (660)
|.||+||+++..+..... .....+++|+|+++++++|+|++++++|.| . |||+| + .||++ +++.|
T Consensus 313 ~~YG~TE~~~~~~~~~~~~~~~~~~~~G~~~~~~~~~i~d~~~~~~~~g-~--GEl~v~g~~v~~GY~~------~p~~t 383 (517)
T 3r44_A 313 QGYALTESCGGGTLLLSEDALRKAGSAGRATMFTDVAVRGDDGVIREHG-E--GEVVIKSDILLKEYWN------RPEAT 383 (517)
T ss_dssp EEEECGGGTTCEEEECGGGTTTTTTCCBEECTTEEEEEECTTSCEESSE-E--EEEEEEETTSCSEETT------CHHHH
T ss_pred EeecccccccceeecCCccccccCCCCCcCCCCeEEEEECCCCCCCCCC-C--eEEEEeCcchhhhhCC------Chhhh
Confidence 999999998754443332 244567899999999999999999999998 4 99999 3 45555 78889
Q ss_pred cccccccccCCCceeEeeCceEEEecCceEEEEeccCCccccCceeecchHHHHhhcCCCCceeeEEEEEeecCcc-eee
Q 006121 576 EVYFRGMPMYKGMCLRRHGDIIKRTVGGYIIVQGRADDTMNLGGIKALLLPLTFLSSPRSSFKCLHIYAWLYFHKL-ELI 654 (660)
Q Consensus 576 ~~~f~~~p~~~~~r~y~TGDl~~~~~dG~l~~~GR~dd~iki~G~rv~~~eIE~~L~~~~~V~~a~vv~~~~~~~~-~l~ 654 (660)
++.|. .+||+|||+|++++||+|+|+||+|||||++|+||+|.|||++|.+||+|++|+|+...+.... .++
T Consensus 384 ~~~f~-------~g~~~TGDl~~~~~dG~l~~~GR~dd~ik~~G~~v~p~eIE~~l~~~p~V~~~~Vv~~~~~~~g~~~~ 456 (517)
T 3r44_A 384 RDAFD-------NGWFRTGDIGEIDDEGYLYIKDRLKDMIISGGENVYPAEIESVIIGVPGVSEVAVIGLPDEKWGEIAA 456 (517)
T ss_dssp HHTEE-------TTEEEEEEEEEECTTSCEEEEECGGGCEEETTEEECHHHHHHHHTTSTTEEEEEEEEEEETTTEEEEE
T ss_pred Hhhhc-------CCCEecceeEEEcCCeeEEEecCCcCEEEECCEEECHHHHHHHHHhCCCEeEEEEEeccccccCceEE
Confidence 98884 2399999999999999999999999999999999999999999999999999999988766544 455
Q ss_pred eec
Q 006121 655 FYF 657 (660)
Q Consensus 655 a~~ 657 (660)
+|+
T Consensus 457 a~v 459 (517)
T 3r44_A 457 AIV 459 (517)
T ss_dssp EEE
T ss_pred EEE
Confidence 554
No 15
>3o83_A Peptide arylation enzyme; ligase, adenylation of 2,3-dihydroxybenzoate and transfer to pantetheine cofactor of BASF; HET: IXN; 1.90A {Acinetobacter baumannii} SCOP: e.23.1.0 PDB: 3o82_A* 3o84_A* 3u16_A* 3u17_A*
Probab=100.00 E-value=2.2e-70 Score=610.81 Aligned_cols=437 Identities=17% Similarity=0.159 Sum_probs=316.4
Q ss_pred cCCCCCCcEEEEEecCCCCCCCceeecHHHHHHHHHHHHHHHHhc-cCCCCEEEEEcCCCHHHHHHHHHHHHcCcEEEec
Q 006121 185 HRRKEDNTVAIVWREDRCDESAVNLMTYKELREQVMLVANALDTM-FSKGDAIAIDMPMTVRAVIIYLAIILAGYVVVSI 263 (660)
Q Consensus 185 ~a~~~pd~~Av~~~~~~~~~~~~~~lTY~eL~~~a~~lA~~L~~~-v~~gd~V~i~~~~s~~~vva~lA~lkaGa~~vpl 263 (660)
+++++|+++|+++.++ ++||+||+++++++|++|++. +++||+|+|+++|++++++++|||+|+|++++|+
T Consensus 39 ~a~~~p~~~Al~~~~~--------~~Ty~eL~~~~~~lA~~L~~~Gv~~gd~V~i~~~n~~~~~~~~lA~~~~Gav~vpl 110 (544)
T 3o83_A 39 GVQSHPHSLAIICGER--------QLSYIELDRLSTNLATRLAEKGLGKGDTALVQLPNVAEFYIVFFALLKAGVVVLNA 110 (544)
T ss_dssp HHHHCTTSEEEEETTE--------EEEHHHHHHHHHHHHHHHHHTTCCTTCEEEECCCSSHHHHHHHHHHHHHTCEEEEC
T ss_pred HHHhCCCceEEEcCCC--------ceeHHHHHHHHHHHHHHHHHCCCCCCCEEEEECCCCHHHHHHHHHHHHhCcEEecC
Confidence 4578999999999877 999999999999999999999 9999999999999999999999999999999999
Q ss_pred CCCCCHHHHHHHHHhcCeeEEEeecceeecCccccchhhHhccCCC-cEEEEcCCCCCCCCCCCCCCcchhhhhccCCCC
Q 006121 264 ADSFAAREIATRLRVSKAKGIFTQDFILRGGRKFPLYSKVLGAAPL-KAIVLPAIGNDVGIPLREQDLSWKDFLSSVDYH 342 (660)
Q Consensus 264 ~p~~p~~~l~~~l~~~~~~~il~~~~~~~~~~~~~~~~~~~~~~~~-~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 342 (660)
+|.++.+++.+++++++++++|++...... ........+...... ..+++.... .....+.++......
T Consensus 111 ~~~~~~~~l~~~l~~~~~~~li~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~--------~~~~~~~~~~~~~~~- 180 (544)
T 3o83_A 111 LYSHRQYELNAFIKQIQPKLLIGSRQHEVF-SNNQFIDSLHDVNLSPEIILMLNHQ--------ATDFGLLDWIETPAE- 180 (544)
T ss_dssp CTTCCHHHHHHHHHHHCCSEEEEETTSGGG-SSSHHHHHHHHTTCCCSEEEEETCC--------TTSEEHHHHHHSCCS-
T ss_pred CCCCCHHHHHHHHHhcCeeEEEEccccccc-cHHHHHHHHhhcccCcceEEEecCC--------ccccchhhhhhcccc-
Confidence 999999999999999999999998753210 001112222222222 222221111 011233333332221
Q ss_pred CCCCCCCCccCCCCCeEEEEecCCCCCCcceEEecchhhHHHHHHhhHhcCCCCCCEEEEecCccccchhh--HHHHhhh
Q 006121 343 PRPNYYSPVYNPVDAVVNILFSSGTTGEPKAIPWTQLSSIRCTAEGWAHIDLKVGDVYCWPTNLGWVMGPV--ILFSSFL 420 (660)
Q Consensus 343 ~~~~~~~~~~~~~~~~a~i~~TSGSTG~PKgV~~sh~~l~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~--~~~~~l~ 420 (660)
.........++++|||+|||||||+||||+++|+++.+.+.+....++++++|++++.+|++|.+++. .++.+|+
T Consensus 181 ---~~~~~~~~~~~d~a~i~~TSGTTG~PKgv~~sh~~~~~~~~~~~~~~~~~~~d~~l~~~p~~h~~~~~~~~~~~~l~ 257 (544)
T 3o83_A 181 ---TFVDFSSTPADEVAFFQLSGGSTGTPKLIPRTHNDYDYSVRASAEICGLNSNTRLLCALPAPHNFMLSSPGALGVLH 257 (544)
T ss_dssp ---SCCCCCCCCTTSEEEEEECCC--CCCCEEEEEHHHHHHHHHHHHHHTTCCTTCEEEECSCTTSHHHHHSSHHHHHHH
T ss_pred ---cccccccCCccceEEEEECCCcccCCceEEechHHHHHHHHHHHHHhCCCCCCeEEEecCcceEeecchHHHHHHHH
Confidence 11112345689999999999999999999999999999999888899999999999999998877763 6899999
Q ss_pred cCcEEEEecCCCChhhHHHHHHHcCCeEEeecHHHHHHHHhcCCCCCCCccCccEEEeecCCCChhhHHHHHhhCCCCce
Q 006121 421 NGATLALYQGSPLERSFGKFVQDAGVTVLGTVPSLVKAWRNTNCLEGLDWTKIRSFASTGETSNVDDDLWLSSKAWYNAI 500 (660)
Q Consensus 421 ~G~~lv~~~~~~~~~~l~~~i~~~~vt~l~~~P~~l~~l~~~~~~~~~~l~~lr~v~~gGe~l~~~~~~~~~~~~~~~~l 500 (660)
.|+++++.+ .+++..+++.|+++++|++.++|+++..|++.......++++||.+++|||++++++.+++.+.+ ++++
T Consensus 258 ~G~~~v~~~-~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~~~~lr~i~~gG~~l~~~~~~~~~~~~-~~~~ 335 (544)
T 3o83_A 258 AGGCVVMAP-NPEPLNCFSIIQRHQVNMASLVPSAVIMWLEKAAQYKDQIQSLKLLQVGGASFPESLARQVPEVL-NCKL 335 (544)
T ss_dssp TTCEEEECS-SCCHHHHHHHHHHHTCCEEEECHHHHHHHHHHHTTTHHHHTTCCEEEEESSCCCHHHHTHHHHHH-CSEE
T ss_pred cCCEEEECC-CCCHHHHHHHHHHHCCCEEEechHHHHHHHhchhhccccCCcceEEEEcCCCCCHHHHHHHHHHh-CCcE
Confidence 999999987 46889999999999999999999999999887555556688999999999999999999998876 5899
Q ss_pred eccccccccccccccCCcCCCCcccccCcCC-CCceEEEEcCCCCcCCCCCCceeEEEE-e----ccccCCcccccCccc
Q 006121 501 IESCGGTELSSAYIQGSLLQPQAFGAFSTAT-MTAGLVILDECGVPYPDDQPCVGEVGL-F----PLYLGASDRLLNADH 574 (660)
Q Consensus 501 ~n~YG~TE~~~~~~~~~~~~~~~~~~iG~p~-~~~~~~vld~~~~~vp~G~~giGel~v-~----~~y~~~~~~~~~~~~ 574 (660)
+|.||+||+++.++...........++|+|+ ++++++|+|++++++|.|+. |||+| + .||++ +++.
T Consensus 336 ~~~YG~TE~~~~~~~~~~~~~~~~~~~G~p~~~~~~~~i~d~~~~~~~~g~~--GEl~v~g~~v~~GY~~------~~~~ 407 (544)
T 3o83_A 336 QQVFGMAEGLVNYTRLDDSDEQIFTTQGRPISSDDEIKIVDEQYREVPEGEI--GMLATRGPYTFCGYYQ------SPEH 407 (544)
T ss_dssp EEEEECTTSCEEECCTTSCHHHHHHCCCEESCTTCEEEEECTTSCBCCTTCC--EEEEEECTTSCSCCTT------CHHH
T ss_pred EeeeccccccceeecCCCchhhccCCCceecCCCcEEEEECCCCCCCCCCCe--eEEEEecCCcchhhcC------Chhh
Confidence 9999999998654333222223446899997 89999999999999999996 99999 3 45555 7888
Q ss_pred ccccccccccCCCceeEeeCceEEEecCceEEEEeccCCccccCceeecchHHHHhhcCCCCceeeEEEEEeecC-ccee
Q 006121 575 EEVYFRGMPMYKGMCLRRHGDIIKRTVGGYIIVQGRADDTMNLGGIKALLLPLTFLSSPRSSFKCLHIYAWLYFH-KLEL 653 (660)
Q Consensus 575 t~~~f~~~p~~~~~r~y~TGDl~~~~~dG~l~~~GR~dd~iki~G~rv~~~eIE~~L~~~~~V~~a~vv~~~~~~-~~~l 653 (660)
|++.|..++ ||+|||+|++++||+|+|+||+|||||++|+||+|.|||++|.+||+|++|+|+...+.. +..+
T Consensus 408 t~~~f~~~g------~~~TGDlg~~~~dG~l~~~GR~dd~ik~~G~~v~p~eIE~~l~~~p~V~~a~vv~~~~~~~g~~~ 481 (544)
T 3o83_A 408 NSQVFDEDN------YYYSGDLVQRTPDGNLRVVGRIKDQINRGGEKIASEEIEKLILLHPEVMHAALVAIVDEQFGEKS 481 (544)
T ss_dssp HHHHBCTTC------CEEEEEEEEECTTSCEEEEEEEC------------------------------------------
T ss_pred hhhhCCCCC------CeEcCCEEEEcCCCCEEEEeecCCEEEeCCEEECHHHHHHHHHhCCCccEEEEEeccCCCCCceE
Confidence 999996543 999999999999999999999999999999999999999999999999999998876544 4556
Q ss_pred eeecc
Q 006121 654 IFYFS 658 (660)
Q Consensus 654 ~a~~~ 658 (660)
++|+.
T Consensus 482 ~a~vv 486 (544)
T 3o83_A 482 CAFIV 486 (544)
T ss_dssp -----
T ss_pred EEEEE
Confidence 66653
No 16
>3e7w_A D-alanine--poly(phosphoribitol) ligase subunit 1; DLTA, non-ribosomal peptide synthetase, NRPS, adenylation domain, D-alanylation; HET: AMP; 2.28A {Bacillus subtilis} PDB: 3e7x_A*
Probab=100.00 E-value=1.4e-69 Score=599.97 Aligned_cols=422 Identities=20% Similarity=0.195 Sum_probs=358.8
Q ss_pred cCCCCCCcEEEEEecCCCCCCCceeecHHHHHHHHHHHHHHHHhc--cCCCCEEEEEcCCCHHHHHHHHHHHHcCcEEEe
Q 006121 185 HRRKEDNTVAIVWREDRCDESAVNLMTYKELREQVMLVANALDTM--FSKGDAIAIDMPMTVRAVIIYLAIILAGYVVVS 262 (660)
Q Consensus 185 ~a~~~pd~~Av~~~~~~~~~~~~~~lTY~eL~~~a~~lA~~L~~~--v~~gd~V~i~~~~s~~~vva~lA~lkaGa~~vp 262 (660)
+|+++|+++|+++.++ ++||+||+++++++|++|++. +++|++|+|+++|++++++++|||+++|++++|
T Consensus 10 ~a~~~p~~~Al~~~~~--------~~Ty~eL~~~~~~~A~~L~~~~~~~~g~~V~i~~~n~~~~~~~~lA~~~~G~~~vp 81 (511)
T 3e7w_A 10 HAETYPQTDAFRSQGQ--------SLTYQELWEQSDRAAAAIQKRISGEKKSPILVYGHMEPHMIVSFLGSVKAGHPYIP 81 (511)
T ss_dssp HHHHSTTSEEEEETTE--------EEEHHHHHHHHHHHHHHHTTTSCSSSCCCEEEEESSCHHHHHHHHHHHHHTCCEEE
T ss_pred HHHHCCCCeEEEcCCc--------eeeHHHHHHHHHHHHHHHHHhcCCCCCCeEEEEecCCHHHHHHHHHHHHhCCEEEe
Confidence 3578999999999877 999999999999999999885 889999999999999999999999999999999
Q ss_pred cCCCCCHHHHHHHHHhcCeeEEEeecceeecCccccchhhHhccCCCcEEEEcCCCCCCCCCCCCCCcchhhhhccCCCC
Q 006121 263 IADSFAAREIATRLRVSKAKGIFTQDFILRGGRKFPLYSKVLGAAPLKAIVLPAIGNDVGIPLREQDLSWKDFLSSVDYH 342 (660)
Q Consensus 263 l~p~~p~~~l~~~l~~~~~~~il~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 342 (660)
++|.+|.+++.+++++++++++|+++..... ... .......++++......
T Consensus 82 l~~~~~~~~l~~~l~~~~~~~li~~~~~~~~------------~~~----------------~~~~~~~~~~~~~~~~~- 132 (511)
T 3e7w_A 82 VDLSIPSERIAKIIESSGAELLIHAAGLSID------------AVG----------------QQIQTVSAEELLENEGG- 132 (511)
T ss_dssp EETTSCHHHHHHHHHHHTCCEEEESSSCCTT------------CCC----------------CSSCEEEHHHHHTSCSC-
T ss_pred cCCCChHHHHHHHHHhCCCCEEEecccccch------------hcc----------------cccceecHhhhhccccC-
Confidence 9999999999999999999999997642100 000 00112334444433221
Q ss_pred CCCCCCCCccCCCCCeEEEEecCCCCCCcceEEecchhhHHHHHHhhHhcCCCCCCEEEEecCccccchhhHHHHhhhcC
Q 006121 343 PRPNYYSPVYNPVDAVVNILFSSGTTGEPKAIPWTQLSSIRCTAEGWAHIDLKVGDVYCWPTNLGWVMGPVILFSSFLNG 422 (660)
Q Consensus 343 ~~~~~~~~~~~~~~~~a~i~~TSGSTG~PKgV~~sh~~l~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~l~~G 422 (660)
.........+++++||+|||||||+||||+++|+++.+.+.+....+++++++++++.+|++|+.+++.++.+|+.|
T Consensus 133 ---~~~~~~~~~~~~~a~i~~TSGTTG~PKgV~~sh~~l~~~~~~~~~~~~~~~~d~~l~~~p~~~~~~~~~~~~~l~~G 209 (511)
T 3e7w_A 133 ---SVSQDQWVKEHETFYIIYTSGSTGNPKGVQISAANLQSFTDWICADFPVSGGKIFLNQAPFSFDLSVMDLYPCLQSG 209 (511)
T ss_dssp ---CCCGGGSCCTTSEEEEEEECCTTSSCEEEEEEHHHHHHHHHHHHHHSTTTTTCEEEECSCTTSTHHHHHHHHHHHTT
T ss_pred ---CccccccCCCCCeEEEEECCCCCCCCCEEEEcHHHHHHHHHHHHHhcCCCccceEEEeCCccHHHHHHHHHHHHhcC
Confidence 11122345678999999999999999999999999999999888899999999999999999999999999999999
Q ss_pred cEEEEecCC--CChhhHHHHHHHcCCeEEeecHHHHHHHHhcCCCCCCCccCccEEEeecCCCChhhHHHHHhhCCCCce
Q 006121 423 ATLALYQGS--PLERSFGKFVQDAGVTVLGTVPSLVKAWRNTNCLEGLDWTKIRSFASTGETSNVDDDLWLSSKAWYNAI 500 (660)
Q Consensus 423 ~~lv~~~~~--~~~~~l~~~i~~~~vt~l~~~P~~l~~l~~~~~~~~~~l~~lr~v~~gGe~l~~~~~~~~~~~~~~~~l 500 (660)
+++++.+.. .++..+++.|+++++|++.++|+++..|+.........++++|.+++|||++++++.+++.+.++++++
T Consensus 210 ~~~~~~~~~~~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~~~~l~~~~~~G~~l~~~~~~~~~~~~~~~~i 289 (511)
T 3e7w_A 210 GTLHCVTKDAVNKPKVLFEELKKSGLNVWTSTPSFVQMCLMDPGFSQDLLPHADTFMFCGEVLPVSVAKALLERFPKAKI 289 (511)
T ss_dssp CEEEECCHHHHHSHHHHHHHHHHHCCSEEEECHHHHHHHHTSTTCSTTTCTTCCEEEECSSCCCHHHHHHHHHHCTTCEE
T ss_pred CEEEEcChhhhcCHHHHHHHHHHcCCcEEEecHHHHHHHHhccccccccCCcccEEEEecCCCCHHHHHHHHHHCCCcEE
Confidence 999998642 478899999999999999999999999998776666778999999999999999999999999988999
Q ss_pred eccccccccccccccCCcC----CCCcccccCcCCCCceEEEEcCCCCcCCCCCCceeEEEE-e----ccccCCcccccC
Q 006121 501 IESCGGTELSSAYIQGSLL----QPQAFGAFSTATMTAGLVILDECGVPYPDDQPCVGEVGL-F----PLYLGASDRLLN 571 (660)
Q Consensus 501 ~n~YG~TE~~~~~~~~~~~----~~~~~~~iG~p~~~~~~~vld~~~~~vp~G~~giGel~v-~----~~y~~~~~~~~~ 571 (660)
+|.||+||+++.++..... ......++|+|+++++++|+|++|+++|.|+. |||+| + .||++ +
T Consensus 290 ~~~YG~TE~~~~~~~~~~~~~~~~~~~~~~~G~~~~~~~~~i~d~~g~~~~~g~~--GEl~v~g~~v~~GY~~------~ 361 (511)
T 3e7w_A 290 FNTYGPTEATVAVTSVEITNDVISRSESLPVGFAKPDMNIFIMDEEGQPLPEGEK--GEIVIAGPSVSRGYLG------E 361 (511)
T ss_dssp EECCCCGGGSSCSEEEEECHHHHTTCSSCCCBEECTTCEEEEECTTSCBCCTTCC--EEEEEESTTSCCCBTT------C
T ss_pred EeCcccchheeeeeEEeccccccccCCcCCCcceeCCCEEEEECCCCCCCCCCCc--eEEEEecCccChhhCC------C
Confidence 9999999998754432221 22345689999999999999999999999997 99999 3 45555 7
Q ss_pred cccccccccccccCCCceeEeeCceEEEecCceEEEEeccCCccccCceeecchHHHHhhcCCCCceeeEEEEEeecC-c
Q 006121 572 ADHEEVYFRGMPMYKGMCLRRHGDIIKRTVGGYIIVQGRADDTMNLGGIKALLLPLTFLSSPRSSFKCLHIYAWLYFH-K 650 (660)
Q Consensus 572 ~~~t~~~f~~~p~~~~~r~y~TGDl~~~~~dG~l~~~GR~dd~iki~G~rv~~~eIE~~L~~~~~V~~a~vv~~~~~~-~ 650 (660)
++.|++.|..+ ++.+||+|||+|++ +||+|+|+||+||+||++|+||+|.|||++|.+||+|++|+|+...+.. +
T Consensus 362 ~~~t~~~f~~~---~g~~~~~TGDlg~~-~dG~l~~~GR~~d~ik~~G~~v~p~eIE~~l~~~p~V~~a~vv~~~~~~~~ 437 (511)
T 3e7w_A 362 PELTEKAFFSH---EGQWAYRTGDAGFI-QDGQIFCQGRLDFQIKLHGYRMELEEIEFHVRQSQYVRSAVVIPYQPNGTV 437 (511)
T ss_dssp HHHHHHHEEES---SSSEEEEEEEEEEE-ETTEEEEEEESSSEEEETTEEEEHHHHHHHHHHSTTEEEEEEEEECSSSSC
T ss_pred cccchhhhcCC---CCCEEEeCCCeEEc-cCCeEEEEccccCEEEECCEEeCHHHHHHHHHhCCCcceEEEEEEcCCCCc
Confidence 88899998753 36779999999999 5999999999999999999999999999999999999999998766443 4
Q ss_pred ceeeeecc
Q 006121 651 LELIFYFS 658 (660)
Q Consensus 651 ~~l~a~~~ 658 (660)
..+++++.
T Consensus 438 ~~~~a~vv 445 (511)
T 3e7w_A 438 EYLIAAIV 445 (511)
T ss_dssp CEEEEEEE
T ss_pred eEEEEEEE
Confidence 56777754
No 17
>1v25_A Long-chain-fatty-acid-COA synthetase; ligase, structural genomics, riken structural genomics/proteomics initiative, RSGI; HET: ANP; 2.30A {Thermus thermophilus} SCOP: e.23.1.1 PDB: 1ult_A* 1v26_A*
Probab=100.00 E-value=1.1e-69 Score=604.87 Aligned_cols=433 Identities=20% Similarity=0.171 Sum_probs=342.3
Q ss_pred CCCCCCcEEEEEecCCCCCCCceeecHHHHHHHHHHHHHHHHhc-cCCCCEEEEEcCCCHHHHHHHHHHHHcCcEEEecC
Q 006121 186 RRKEDNTVAIVWREDRCDESAVNLMTYKELREQVMLVANALDTM-FSKGDAIAIDMPMTVRAVIIYLAIILAGYVVVSIA 264 (660)
Q Consensus 186 a~~~pd~~Av~~~~~~~~~~~~~~lTY~eL~~~a~~lA~~L~~~-v~~gd~V~i~~~~s~~~vva~lA~lkaGa~~vpl~ 264 (660)
++++|+++|+++.+. +..+++||+||+++++++|++|++. +++||+|+|+++|++++++++|||+++|++++|++
T Consensus 28 a~~~p~~~a~~~~~~----~~~~~~Ty~el~~~~~~lA~~L~~~Gv~~gd~V~i~~~n~~e~~~~~lA~~~~Gav~vpl~ 103 (541)
T 1v25_A 28 AALFGRKEVVSRLHT----GEVHRTTYAEVYQRARRLMGGLRALGVGVGDRVATLGFNHFRHLEAYFAVPGMGAVLHTAN 103 (541)
T ss_dssp HHHSTTCEEEEECTT----SCEEEEEHHHHHHHHHHHHHHHHHTTCCTTCEEEEECCSSHHHHHHHHHHHHTTCEEEECC
T ss_pred HHhCCCceEEEEecC----CCCceecHHHHHHHHHHHHHHHHHcCCCCCCEEEEEcCCcHHHHHHHHHHHhcCcEEEecC
Confidence 478999999996321 1234899999999999999999999 99999999999999999999999999999999999
Q ss_pred CCCCHHHHHHHHHhcCeeEEEeecceeecCccccchhhHhccCCCc-EEEEcCCCCCCCCCCCCCCcchhhhhccCCCCC
Q 006121 265 DSFAAREIATRLRVSKAKGIFTQDFILRGGRKFPLYSKVLGAAPLK-AIVLPAIGNDVGIPLREQDLSWKDFLSSVDYHP 343 (660)
Q Consensus 265 p~~p~~~l~~~l~~~~~~~il~~~~~~~~~~~~~~~~~~~~~~~~~-~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 343 (660)
|.++.+++.++++++++++||+++... +....+....+.. .+++..... ..+...++++......
T Consensus 104 ~~~~~~~l~~~l~~~~~~~vi~~~~~~------~~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~~~~~~~-- 169 (541)
T 1v25_A 104 PRLSPKEIAYILNHAEDKVLLFDPNLL------PLVEAIRGELKTVQHFVVMDEKA------PEGYLAYEEALGEEAD-- 169 (541)
T ss_dssp TTSCHHHHHHHHHHHTCSEEEECGGGH------HHHHHHGGGCSSCCEEEESSSCC------CTTCEEHHHHCCSCCC--
T ss_pred cccCHHHHHHHHHhCCCcEEEEChhHH------HHHHHHHhhCCCccEEEEecCCC------CcccccHHHHhhccCC--
Confidence 999999999999999999999987532 2222333333322 122211110 0123456655443221
Q ss_pred CCCCCCCccCCCCCeEEEEecCCCCCCcceEEecchhhHHHHHHh--hHhcCCCCCCEEEEecCccccchhhHHHHhhhc
Q 006121 344 RPNYYSPVYNPVDAVVNILFSSGTTGEPKAIPWTQLSSIRCTAEG--WAHIDLKVGDVYCWPTNLGWVMGPVILFSSFLN 421 (660)
Q Consensus 344 ~~~~~~~~~~~~~~~a~i~~TSGSTG~PKgV~~sh~~l~~~~~~~--~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~l~~ 421 (660)
.....+++++||+|||||||+||||+++|+++++...+. ...++++++|++++.+|++|+.++..++.+++.
T Consensus 170 ------~~~~~~~~~a~i~~TSGTTG~PKgV~~sh~~l~~~~~~~~~~~~~~~~~~d~~l~~~p~~h~~~~~~~~~~l~~ 243 (541)
T 1v25_A 170 ------PVRVPERAACGMAYTTGTTGLPKGVVYSHRALVLHSLAASLVDGTALSEKDVVLPVVPMFHVNAWCLPYAATLV 243 (541)
T ss_dssp ------CCCCCTTSEEEEEEECSSSSSCEEEEEEHHHHHHHHHHTTSTTTTCCCTTCEEEECSCTTSHHHHTHHHHHHHH
T ss_pred ------cccCCCCCcEEEEECCCCCCCCcEeeeehHHHHHHHhhhhhcccccCCCCCEEEEeccchhhhHHHHHHHHHhc
Confidence 123467899999999999999999999999998776552 345678899999999999999998778899999
Q ss_pred CcEEEEecCCCChhhHHHHHHHcCCeEEeecHHHHHHHHhcCCCCCCCccCccEEEeecCCCChhhHHHHHhhCCCCcee
Q 006121 422 GATLALYQGSPLERSFGKFVQDAGVTVLGTVPSLVKAWRNTNCLEGLDWTKIRSFASTGETSNVDDDLWLSSKAWYNAII 501 (660)
Q Consensus 422 G~~lv~~~~~~~~~~l~~~i~~~~vt~l~~~P~~l~~l~~~~~~~~~~l~~lr~v~~gGe~l~~~~~~~~~~~~~~~~l~ 501 (660)
|+++++.+..+++..+++.|+++++|+++++|+++..|++.......++++||.+++|||++++++.+++ +.+ +++++
T Consensus 244 G~~~v~~~~~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~l~~lr~i~~gG~~l~~~~~~~~-~~~-g~~~~ 321 (541)
T 1v25_A 244 GAKQVLPGPRLDPASLVELFDGEGVTFTAGVPTVWLALADYLESTGHRLKTLRRLVVGGSAAPRSLIARF-ERM-GVEVR 321 (541)
T ss_dssp TCEEEECTTCCSHHHHHHHHHHTTCCEEEECHHHHHHHHHHHHHHTCCCSSCCEEEECSSCCCHHHHHHH-HHT-TCEEE
T ss_pred CceEEeeCCCCCHHHHHHHHHhcCeeEEecchHHHHHHHhhhhccCCcchhccEEEECCCCCCHHHHHHH-HHh-CCcee
Confidence 9999998755789999999999999999999999999987543334568899999999999999999988 454 58999
Q ss_pred ccccccccccccccCCcCC----------CCcccccCcCCCCceEEEEcCCCCcCCC-C-CCceeEEEE-e----ccccC
Q 006121 502 ESCGGTELSSAYIQGSLLQ----------PQAFGAFSTATMTAGLVILDECGVPYPD-D-QPCVGEVGL-F----PLYLG 564 (660)
Q Consensus 502 n~YG~TE~~~~~~~~~~~~----------~~~~~~iG~p~~~~~~~vld~~~~~vp~-G-~~giGel~v-~----~~y~~ 564 (660)
|.||+||++.+++...... ....+++|+|+++++++|+|++++++|. | +. |||+| + .||++
T Consensus 322 ~~YG~TE~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~p~~~~~~~i~d~~g~~~~~~~~~~--GEl~v~g~~v~~GY~~ 399 (541)
T 1v25_A 322 QGYGLTETSPVVVQNFVKSHLESLSEEEKLTLKAKTGLPIPLVRLRVADEEGRPVPKDGKAL--GEVQLKGPWITGGYYG 399 (541)
T ss_dssp EEEECGGGSSEEEECCCCGGGTTSCHHHHHHHHTSCBEECTTCEEEEECTTSCBCCSSSCCC--EEEEEESTTSBSSCBT
T ss_pred ecccccccccceecccccccccccCccccccccCCCCCcCCCcEEEEECCCCCCCCCCCCcc--eEEEEeCcchhccccC
Confidence 9999999987554432210 0234689999999999999999999995 3 44 99999 3 45555
Q ss_pred CcccccCcccccccccccccCCCceeEeeCceEEEecCceEEEEeccCCccccCceeecchHHHHhhcCCCCceeeEEEE
Q 006121 565 ASDRLLNADHEEVYFRGMPMYKGMCLRRHGDIIKRTVGGYIIVQGRADDTMNLGGIKALLLPLTFLSSPRSSFKCLHIYA 644 (660)
Q Consensus 565 ~~~~~~~~~~t~~~f~~~p~~~~~r~y~TGDl~~~~~dG~l~~~GR~dd~iki~G~rv~~~eIE~~L~~~~~V~~a~vv~ 644 (660)
+++.|++.|..++ ||+|||+|++|+||+|+|+||+|||||++|+||+|.|||++|.+||+|++|+|+.
T Consensus 400 ------~p~~t~~~f~~~g------~~~TGDlg~~d~dG~l~~~GR~~d~ik~~G~~v~p~eIE~~l~~~p~V~~a~Vv~ 467 (541)
T 1v25_A 400 ------NEEATRSALTPDG------FFRTGDIAVWDEEGYVEIKDRLKDLIKSGGEWISSVDLENALMGHPKVKEAAVVA 467 (541)
T ss_dssp ------CHHHHHTTBCTTS------CEEEEEEEEECTTCCEEEEEESSCEEEETTEEEEHHHHHCC----------CEEE
T ss_pred ------ChhhhhhhccCCC------CeEcCCEEEEcCCceEEEeecccceeeeCCEEECHHHHHHHHHhCCCceEEEEEE
Confidence 7888999997533 9999999999999999999999999999999999999999999999999999998
Q ss_pred EeecC-cceeeeecc
Q 006121 645 WLYFH-KLELIFYFS 658 (660)
Q Consensus 645 ~~~~~-~~~l~a~~~ 658 (660)
..+.. ++.+++|+.
T Consensus 468 ~~~~~~~~~~~a~vv 482 (541)
T 1v25_A 468 IPHPKWQERPLAVVV 482 (541)
T ss_dssp EECSSSSEEEEECC-
T ss_pred ecCCCcCceEEEEEE
Confidence 77654 456777764
No 18
>3fce_A D-alanine--poly(phosphoribitol) ligase subunit 1; DLTA, AMP-forming domain, adenylation, D-alanine protein ligase, ATP complex; HET: ATP; 1.90A {Bacillus cereus} PDB: 3fcc_A* 3dhv_A*
Probab=100.00 E-value=8.9e-70 Score=601.99 Aligned_cols=423 Identities=19% Similarity=0.208 Sum_probs=353.7
Q ss_pred CCCCCCcEEEEEecCCCCCCCceeecHHHHHHHHHHHHHHHHhc-cCCCCEEEEEcCCCHHHHHHHHHHHHcCcEEEecC
Q 006121 186 RRKEDNTVAIVWREDRCDESAVNLMTYKELREQVMLVANALDTM-FSKGDAIAIDMPMTVRAVIIYLAIILAGYVVVSIA 264 (660)
Q Consensus 186 a~~~pd~~Av~~~~~~~~~~~~~~lTY~eL~~~a~~lA~~L~~~-v~~gd~V~i~~~~s~~~vva~lA~lkaGa~~vpl~ 264 (660)
++++|+++|+++.++ ++||+||+++++++|++|++. +++||+|+|+++|++++++++|||+++|++++|++
T Consensus 11 a~~~p~~~A~~~~~~--------~~Ty~el~~~~~~lA~~L~~~g~~~gd~V~i~~~n~~e~~~~~la~~~~G~v~vpl~ 82 (512)
T 3fce_A 11 AAETPDQTAFVWRDA--------KITYKQLKEDSDALAHWISSEYPDDRSPIMVYGHMQPEMIINFLGCVKAGHAYIPVD 82 (512)
T ss_dssp HHHSTTSEEEEETTE--------EEEHHHHHHHHHHHHHHHHHHSTTCCCCEEEEESSCHHHHHHHHHHHHTTCCEEEEE
T ss_pred HHHCCCceEEEeCCc--------eEEHHHHHHHHHHHHHHHHHhCCCCCCEEEEEeCCCHHHHHHHHHHHHhCCEEEeeC
Confidence 478999999999887 999999999999999999999 99999999999999999999999999999999999
Q ss_pred CCCCHHHHHHHHHhcCeeEEEeecceeecCccccchhhHhccCCCcEEEEcCCCCCCCCCCCCCCcchhhhhccCCCCCC
Q 006121 265 DSFAAREIATRLRVSKAKGIFTQDFILRGGRKFPLYSKVLGAAPLKAIVLPAIGNDVGIPLREQDLSWKDFLSSVDYHPR 344 (660)
Q Consensus 265 p~~p~~~l~~~l~~~~~~~il~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 344 (660)
|.++.+++.+++++++++++|++...... ..+.. ++. ...+.++......
T Consensus 83 ~~~~~~~l~~il~~~~~~~~i~~~~~~~~------------~~~~~--~~~-------------~~~~~~~~~~~~~--- 132 (512)
T 3fce_A 83 LSIPADRVQRIAENSGAKLLLSATAVTVT------------DLPVR--IVS-------------EDNLKDIFFTHKG--- 132 (512)
T ss_dssp TTSCHHHHHHHHHHSCCCEEEESSCCCSS------------CCSSE--EEE-------------THHHHHHHHHTTT---
T ss_pred CCCcHHHHHHHHHhcCCCEEEecCccccc------------ccccc--eec-------------hhhhhhhcccccc---
Confidence 99999999999999999999998642110 00000 000 0012222111111
Q ss_pred CCCCCCccCCCCCeEEEEecCCCCCCcceEEecchhhHHHHHHhhHhcCCCCCCEEEEecCccccchhhHHHHhhhcCcE
Q 006121 345 PNYYSPVYNPVDAVVNILFSSGTTGEPKAIPWTQLSSIRCTAEGWAHIDLKVGDVYCWPTNLGWVMGPVILFSSFLNGAT 424 (660)
Q Consensus 345 ~~~~~~~~~~~~~~a~i~~TSGSTG~PKgV~~sh~~l~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~l~~G~~ 424 (660)
....+.....+++++||+|||||||.||||+++|+++.+.+.+....++++++|++++.+|++|+.+++.++.+++.|++
T Consensus 133 ~~~~~~~~~~~~d~a~i~~TSGTTG~PKgv~~th~~l~~~~~~~~~~~~~~~~d~~l~~~p~~~~~~~~~~~~~l~~G~~ 212 (512)
T 3fce_A 133 NTPNPEHAVKGDENFYIIYTSGSTGNPKGVQITYNCLVSFTKWAVEDFNLQTGQVFLNQAPFSFDLSVMDIYPSLVTGGT 212 (512)
T ss_dssp CCCCGGGSCCTTSEEEEEEECC----CEEEEEEHHHHHHHHHHHHHHTTCCSSCEEEECSCTTSGGGHHHHHHHHHTTCE
T ss_pred cCCCccccCCCCCeEEEEECCCCCCCCceEEEehHHHHHHHHHHHHhcCCCCCCEEEEeCCccHhHHHHHHHHHHhCCCE
Confidence 11122334568999999999999999999999999999999988889999999999999999999999999999999999
Q ss_pred EEEecCC--CChhhHHHHHHHcCCeEEeecHHHHHHHHhcCCCCCCCccCccEEEeecCCCChhhHHHHHhhCCCCceec
Q 006121 425 LALYQGS--PLERSFGKFVQDAGVTVLGTVPSLVKAWRNTNCLEGLDWTKIRSFASTGETSNVDDDLWLSSKAWYNAIIE 502 (660)
Q Consensus 425 lv~~~~~--~~~~~l~~~i~~~~vt~l~~~P~~l~~l~~~~~~~~~~l~~lr~v~~gGe~l~~~~~~~~~~~~~~~~l~n 502 (660)
+++.+.. .++..+++.|+++++|++.++|+++..|+........++++||.+++|||++++++.+++.+.+++++++|
T Consensus 213 ~~~~~~~~~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~~~~lr~~~~~G~~l~~~~~~~~~~~~~~~~i~~ 292 (512)
T 3fce_A 213 LWAIDKDMIARPKDLFASLEQSDIQVWTSTPSFAEMCLMEASFSESMLPNMKTFLFCGEVLPNEVARKLIERFPKATIMN 292 (512)
T ss_dssp EEECCHHHHHSHHHHHHHHHHHCCCEEEECHHHHHHHTTSTTCSTTTSTTCCEEEECSSCCCHHHHHHHHHHCTTCEEEE
T ss_pred EEECCHHHhhCHHHHHHHHHHcCCcEEEecHHHHHHHHhhccccchhCccccEEEEecCcCCHHHHHHHHHHCCCCEEEe
Confidence 9998742 47889999999999999999999999998877666778899999999999999999999999998899999
Q ss_pred cccccccccccccCCcC----CCCcccccCcCCCCceEEEEcCCCCcCCCCCCceeEEEE-e----ccccCCcccccCcc
Q 006121 503 SCGGTELSSAYIQGSLL----QPQAFGAFSTATMTAGLVILDECGVPYPDDQPCVGEVGL-F----PLYLGASDRLLNAD 573 (660)
Q Consensus 503 ~YG~TE~~~~~~~~~~~----~~~~~~~iG~p~~~~~~~vld~~~~~vp~G~~giGel~v-~----~~y~~~~~~~~~~~ 573 (660)
.||+||+++.++..... ......++|+|+++++++|+|++|+++|.|+. |||+| + .||++ +++
T Consensus 293 ~YG~TE~~~~~~~~~~~~~~~~~~~~~~~G~~~~~~~~~i~d~~g~~~~~g~~--GEl~v~g~~v~~GY~~------~~~ 364 (512)
T 3fce_A 293 TYGPTEATVAVTGIHVTEEVLDQYKSLPVGYCKSDCRLLIMKEDGTIAPDGEK--GEIVIVGPSVSVGYLG------SPE 364 (512)
T ss_dssp EECCGGGSSCSEEEECCHHHHHHCSSCCCEEECTTCEEEEECSSSCBCCTTSC--EEEEEESTTSCSCBTT------CHH
T ss_pred CcccChhhhheeeEEeccccccccCCCccccccCCcEEEEECCCCCCCCCCCe--EEEEEeccccChhhcC------Cch
Confidence 99999998754432221 12245689999999999999999999999997 99999 3 45555 788
Q ss_pred cccccccccccCCCceeEeeCceEEEecCceEEEEeccCCccccCceeecchHHHHhhcCCCCceeeEEEEEeecCc-ce
Q 006121 574 HEEVYFRGMPMYKGMCLRRHGDIIKRTVGGYIIVQGRADDTMNLGGIKALLLPLTFLSSPRSSFKCLHIYAWLYFHK-LE 652 (660)
Q Consensus 574 ~t~~~f~~~p~~~~~r~y~TGDl~~~~~dG~l~~~GR~dd~iki~G~rv~~~eIE~~L~~~~~V~~a~vv~~~~~~~-~~ 652 (660)
.|++.|.. .++++||+|||+|++ +||+|+|+||+||+||++|+||+|.|||++|.+||+|++|+|+...+... ..
T Consensus 365 ~t~~~f~~---~~~~~~~~TGDlg~~-~dG~l~i~GR~~d~ik~~G~~v~p~eIE~~l~~~p~V~~a~vv~~~~~~~~~~ 440 (512)
T 3fce_A 365 LTEKAFTM---IDGERAYKTGDAGYV-ENGLLFYNGRLDFQIKLHGYRMELEEIEHHLRACSYVEGAVIVPIKKGEKYDY 440 (512)
T ss_dssp HHHHHEEE---ETTEEEEEEEEEEEE-ETTEEEEEEEGGGCEEETTEEECHHHHHHHHHHSTTEEEEEEEEEEETTEEEE
T ss_pred hhhhcccc---CCCCEEEeCCceEEe-cCCEEEEecccCCEEEECCEEECHHHHHHHHHhCCCcceEEEEEEecCCCceE
Confidence 89988864 236779999999999 89999999999999999999999999999999999999999987765543 45
Q ss_pred eeeecc
Q 006121 653 LIFYFS 658 (660)
Q Consensus 653 l~a~~~ 658 (660)
+++++.
T Consensus 441 ~~a~vv 446 (512)
T 3fce_A 441 LLAVVV 446 (512)
T ss_dssp EEEEEE
T ss_pred EEEEEe
Confidence 666653
No 19
>1t5h_X 4-chlorobenzoyl COA ligase; adenylate-forming coenzyme A ligase domain alternation confo change; 2.00A {Alcaligenes SP} SCOP: e.23.1.1 PDB: 1t5d_X 3cw9_A* 3cw8_X* 2qvz_X* 2qw0_X* 3dlp_X* 2qvx_X* 2qvy_X*
Probab=100.00 E-value=1.2e-68 Score=591.51 Aligned_cols=419 Identities=16% Similarity=0.112 Sum_probs=343.3
Q ss_pred cCCCCCCcEEEEEe--cCCCCCCCceeecHHHHHHHHHHHHHHHHhc-cCCCCEEEEEcCCCHHHHHHHHHHHHcCcEEE
Q 006121 185 HRRKEDNTVAIVWR--EDRCDESAVNLMTYKELREQVMLVANALDTM-FSKGDAIAIDMPMTVRAVIIYLAIILAGYVVV 261 (660)
Q Consensus 185 ~a~~~pd~~Av~~~--~~~~~~~~~~~lTY~eL~~~a~~lA~~L~~~-v~~gd~V~i~~~~s~~~vva~lA~lkaGa~~v 261 (660)
+++++||++|+++. +. ++||+||+++++++|++|++. +++||+|+|+++|++++++++|||+++|++++
T Consensus 11 ~a~~~p~~~a~~~~~~~~--------~~Ty~el~~~~~~~A~~L~~~Gv~~gd~V~i~~~~~~~~~~~~lA~~~~G~~~v 82 (504)
T 1t5h_X 11 AATRAPDHCALAVPARGL--------RLTHAELRARVEAVAARLHADGLRPQQRVAVVAPNSADVVIAILALHRLGAVPA 82 (504)
T ss_dssp HHHHCTTSEEEEETTTTE--------EEEHHHHHHHHHHHHHHHHHTTCCTTCEEEEECCSCHHHHHHHHHHHHHTCEEE
T ss_pred HHHhCCCceEEEEcCCCc--------eeEHHHHHHHHHHHHHHHHHcCCCCCCEEEEEcCCCHHHHHHHHHHHHhCcEEE
Confidence 34789999999986 44 899999999999999999999 99999999999999999999999999999999
Q ss_pred ecCCCCCHHHHHHHHHhcCeeEEEe--ecceeecCccccchhhHhccCCCcEEEEcCCCCCCCCCCCCCCcchhhhhccC
Q 006121 262 SIADSFAAREIATRLRVSKAKGIFT--QDFILRGGRKFPLYSKVLGAAPLKAIVLPAIGNDVGIPLREQDLSWKDFLSSV 339 (660)
Q Consensus 262 pl~p~~p~~~l~~~l~~~~~~~il~--~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~ 339 (660)
|+||.++.+++.+++++++++++++ +... ...+....+... ++ .++++....
T Consensus 83 pl~~~~~~~~l~~~l~~~~~~~~i~~~~~~~---------~~~~~~~~~~~~-~~----------------~~~~~~~~~ 136 (504)
T 1t5h_X 83 LLNPRLKSAELAELIKRGEMTAAVIAVGRQV---------ADAIFQSGSGAR-II----------------FLGDLVRDG 136 (504)
T ss_dssp EECTTSCHHHHHHHHHHTTCSEEEECC--CH---------HHHHHHHCCCCE-EE----------------EGGGTEETT
T ss_pred ecCCccChHHHHHHHhhcCCcEEEEecchhh---------hhhhhhccccce-eE----------------EecchhhcC
Confidence 9999999999999999999999999 5432 111101111111 11 223332221
Q ss_pred CCCCCCCCCCCccCCCCCeEEEEecCCCCCCcceEEecchhhHHHHHHhhHhcCC--CCCCEEEEecCccccchh-hHHH
Q 006121 340 DYHPRPNYYSPVYNPVDAVVNILFSSGTTGEPKAIPWTQLSSIRCTAEGWAHIDL--KVGDVYCWPTNLGWVMGP-VILF 416 (660)
Q Consensus 340 ~~~~~~~~~~~~~~~~~~~a~i~~TSGSTG~PKgV~~sh~~l~~~~~~~~~~~~~--~~~~~~l~~~~~~~~~~~-~~~~ 416 (660)
...............++++|||+|||||||+||||+++|+++.+.+.+....+++ .+++++++.+|++|+.++ ..++
T Consensus 137 ~~~~~~~~~~~~~~~~~~~a~i~~TSGTTG~PKgV~~sh~~~~~~~~~~~~~~~~~~~~~~~~l~~~p~~~~~g~~~~~~ 216 (504)
T 1t5h_X 137 EPYSYGPPIEDPQREPAQPAFIFYTSGTTGLPKAAIIPQRAAESRVLFMSTQVGLRHGRHNVVLGLMPLYHVVGFFAVLV 216 (504)
T ss_dssp EECCCSCCCCCCCCCTTSEEEEEECCC---CCCEEEEEGGGHHHHHHHHHHTTCCCSSTTCEEEECSCTTSHHHHTTTHH
T ss_pred cccccCCccCCCCCCCCCeEEEEeCCCCCCCCCEEEecHHHHHHHHHHHHHhhCCCCCCCceEEeecchhhcchHHHHHH
Confidence 0000000111134567999999999999999999999999999988888777888 889999999999999998 5688
Q ss_pred HhhhcCcEEEEecCCCChhhHHHHHHHcCCeEEeecHHHHHHHHhcC-C-CCCCCccCccEEEeecCCCChhhHHHHHhh
Q 006121 417 SSFLNGATLALYQGSPLERSFGKFVQDAGVTVLGTVPSLVKAWRNTN-C-LEGLDWTKIRSFASTGETSNVDDDLWLSSK 494 (660)
Q Consensus 417 ~~l~~G~~lv~~~~~~~~~~l~~~i~~~~vt~l~~~P~~l~~l~~~~-~-~~~~~l~~lr~v~~gGe~l~~~~~~~~~~~ 494 (660)
.+|+.|+++++.+ .+++..+++.|+++++|+++++|++++.|++.. . ....++++||.+++|||++++++.+++.+.
T Consensus 217 ~~l~~G~~~v~~~-~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~~~l~~lr~~~~gG~~l~~~~~~~~~~~ 295 (504)
T 1t5h_X 217 AALALDGTYVVVE-EFRPVDALQLVQQEQVTSLFATPTHLDALAAAAAHAGSSLKLDSLRHVTFAGATMPDAVLETVHQH 295 (504)
T ss_dssp HHHHTTCEEEECS-SCCHHHHHHHHHHHTCCEEECCHHHHHHHHHHHCCTTCCCCCTTCCEEEECCTTCCHHHHHHHHHH
T ss_pred HHHHcCceEEeCC-CCCHHHHHHHHHHhCCeEEEeChHHHHHHHhhhccccccccCccccEEEEcCCcCCHHHHHHHHHh
Confidence 9999999999987 478999999999999999999999999998754 2 234568999999999999999999999988
Q ss_pred CCCCceeccccccccccccccCCcCCCCcccccCcCCCCceEEEEcCCC---CcCCCCCCceeEEEEe------ccccCC
Q 006121 495 AWYNAIIESCGGTELSSAYIQGSLLQPQAFGAFSTATMTAGLVILDECG---VPYPDDQPCVGEVGLF------PLYLGA 565 (660)
Q Consensus 495 ~~~~~l~n~YG~TE~~~~~~~~~~~~~~~~~~iG~p~~~~~~~vld~~~---~~vp~G~~giGel~v~------~~y~~~ 565 (660)
++ ++++|.||+||+++.+.. . ....+++|+|+++++++|+|+++ +++|.|+. |||+|. .||++
T Consensus 296 ~~-~~~~~~YG~TE~~~~~~~--~--~~~~~~~g~p~~~~~~~i~~~~~~~~~~~~~g~~--GEl~v~gg~~~~~GY~~- 367 (504)
T 1t5h_X 296 LP-GEKVNIYGTTEAMNSLYM--R--QPKTGTEMAPGFFSEVRIVRIGGGVDEIVANGEE--GELIVAASDSAFVGYLN- 367 (504)
T ss_dssp CC-SEEEEEEEETTTEEEEEE--E--SCSSSSEEBCCTTCCEEEECTTSCTTCBCCTTCC--EEEEEECCTTSCCCBTT-
T ss_pred cC-cceeeeeccccccccccc--c--CCCCCccccCCCCCceeEEeccCCCCCcCCCCCc--ceEEEeCCceeeceecC-
Confidence 75 789999999999432221 1 24457899999999999999887 99999996 999995 35554
Q ss_pred cccccCcccccccccccccCCCceeEeeCceEEEecCceEEEEeccCCccccCceeecchHHHHhhcCCCCceeeEEEEE
Q 006121 566 SDRLLNADHEEVYFRGMPMYKGMCLRRHGDIIKRTVGGYIIVQGRADDTMNLGGIKALLLPLTFLSSPRSSFKCLHIYAW 645 (660)
Q Consensus 566 ~~~~~~~~~t~~~f~~~p~~~~~r~y~TGDl~~~~~dG~l~~~GR~dd~iki~G~rv~~~eIE~~L~~~~~V~~a~vv~~ 645 (660)
+++.|++.|. + | ||+|||+|++++||+|+|+||+|||||++|+||+|.|||++|.+||+|++|+|+..
T Consensus 368 -----~~~~t~~~f~-~----g--~~~TGDlg~~~~dG~l~~~GR~dd~ik~~G~~v~p~eIE~~l~~~p~V~~a~Vv~~ 435 (504)
T 1t5h_X 368 -----QPQATAEKLQ-D----G--WYRTSDVAVWTPEGTVRILGRVDDMIISGGENIHPSEIERVLGTAPGVTEVVVIGL 435 (504)
T ss_dssp -----CHHHHHHHEE-T----T--EEEEEEEEEECTTSCEEEEEEGGGCEEETTEEECHHHHHHHHTTSTTEEEEEEEEE
T ss_pred -----Cchhhhhhhc-C----C--ccccCcEEEECCCceEEEeCcccCEEEECCEEECHHHHHHHHHhCCCcceEEEEEe
Confidence 7788888883 2 2 99999999999999999999999999999999999999999999999999999987
Q ss_pred eecC-cceeeeecc
Q 006121 646 LYFH-KLELIFYFS 658 (660)
Q Consensus 646 ~~~~-~~~l~a~~~ 658 (660)
.+.. +..+++|+.
T Consensus 436 ~~~~~g~~~~a~vv 449 (504)
T 1t5h_X 436 ADQRWGQSVTACVV 449 (504)
T ss_dssp ECSSSSEEEEEEEE
T ss_pred ecCCCCcEEEEEEE
Confidence 7654 456888875
No 20
>2d1s_A Luciferase, luciferin 4-monooxygenase; alpha/beta, beta barrel, alpha+beta, riken structural genomics/proteomics initiative, RSGI; HET: SLU; 1.30A {Luciola cruciata} PDB: 2d1q_A* 2d1r_A* 2d1t_A*
Probab=100.00 E-value=8.2e-69 Score=598.34 Aligned_cols=433 Identities=17% Similarity=0.092 Sum_probs=354.5
Q ss_pred CCCCCCcEEEEEecCCCCCCCceeecHHHHHHHHHHHHHHHHhc-cCCCCEEEEEcCCCHHHHHHHHHHHHcCcEEEecC
Q 006121 186 RRKEDNTVAIVWREDRCDESAVNLMTYKELREQVMLVANALDTM-FSKGDAIAIDMPMTVRAVIIYLAIILAGYVVVSIA 264 (660)
Q Consensus 186 a~~~pd~~Av~~~~~~~~~~~~~~lTY~eL~~~a~~lA~~L~~~-v~~gd~V~i~~~~s~~~vva~lA~lkaGa~~vpl~ 264 (660)
++++ +++|+++.+.+ +++||+||+++++++|++|++. +++||+|+|+++|++++++++|||+++|++++|++
T Consensus 36 ~~~~-~~~A~~~~~~~------~~~Ty~el~~~~~~lA~~L~~~Gv~~gd~V~i~~~n~~e~~~~~la~~~~Gav~vpl~ 108 (548)
T 2d1s_A 36 YAKL-GAIAFTNAVTG------VDYSYAEYLEKSCCLGKALQNYGLVVDGRIALCSENCEEFFIPVIAGLFIGVGVAPTN 108 (548)
T ss_dssp HHHH-TCEEEEETTTC------CEEEHHHHHHHHHHHHHHHHHHTCCTTCEEEEECSSCTTTHHHHHHHHHHTCEEEEEC
T ss_pred hccc-CCceEEEcCCC------CEeeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEeCCchhHHHHHHHHHhhCCEEeccC
Confidence 3567 99999984210 2899999999999999999999 99999999999999999999999999999999999
Q ss_pred CCCCHHHHHHHHHhcCeeEEEeecceeecCccccchhhHhccCC--CcEEEEcCCCCCCCCCCCCCCcchhhhhccCCCC
Q 006121 265 DSFAAREIATRLRVSKAKGIFTQDFILRGGRKFPLYSKVLGAAP--LKAIVLPAIGNDVGIPLREQDLSWKDFLSSVDYH 342 (660)
Q Consensus 265 p~~p~~~l~~~l~~~~~~~il~~~~~~~~~~~~~~~~~~~~~~~--~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 342 (660)
|.++.+++.++++++++++||+++... +.+..+....+ ..++++..... ..+...|+++......
T Consensus 109 ~~~~~~~l~~~l~~~~~~~vi~~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~~~~~~~- 175 (548)
T 2d1s_A 109 EIYTLRELVHSLGISKPTIVFSSKKGL------DKVITVQKTVTTIKTIVILDSKVD------YRGYQCLDTFIKRNTP- 175 (548)
T ss_dssp TTSCHHHHHHHHHHHCCSEEEECTTTH------HHHHHHHHHSTTCCEEEETTCSSC------BTTBCBHHHHHHHTSC-
T ss_pred CCCCHHHHHHHHHhcCCeEEEEcHHHH------HHHHHHhcCCCCCCEEEEeCCccc------ccccccHHHHHhcCcc-
Confidence 999999999999999999999997532 12222222222 12222211100 0122346666543321
Q ss_pred CCCCCCCCccC------CCCCeEEEEecCCCCCCcceEEecchhhHHHHHHhhHh---cCCCCCCEEEEecCccccchhh
Q 006121 343 PRPNYYSPVYN------PVDAVVNILFSSGTTGEPKAIPWTQLSSIRCTAEGWAH---IDLKVGDVYCWPTNLGWVMGPV 413 (660)
Q Consensus 343 ~~~~~~~~~~~------~~~~~a~i~~TSGSTG~PKgV~~sh~~l~~~~~~~~~~---~~~~~~~~~l~~~~~~~~~~~~ 413 (660)
.. .+.... .++++|||+|||||||+||||+++|+++.+.+.+.... ++++++|++++.+|++|+.+++
T Consensus 176 -~~--~~~~~~~~~~~~~~~d~a~i~~TSGTTG~PKgv~~sh~~~~~~~~~~~~~~~~~~~~~~d~~l~~~p~~h~~g~~ 252 (548)
T 2d1s_A 176 -PG--FQASSFKTVEVDRKEQVALIMNSSGSTGLPKGVQLTHENIVTRFSHARDPIYGNQVSPGTAVLTVVPFHHGFGMF 252 (548)
T ss_dssp -TT--CCGGGCCCCCCCTTTCEEEEECCSSCSSSCCCEEEEHHHHHHHHHHHTCTTTSCCCCTTCEEEECSCTTSHHHHH
T ss_pred -cc--CCcccccccccCCCCCEEEEEeCCCCCCCCCEEEecHHHHHHHHHHhhchhhccCCCccceEEEeccHHHHHHHH
Confidence 00 111111 23899999999999999999999999999888777665 6788999999999999999987
Q ss_pred H-HHHhhhcCcEEEEecCCCChhhHHHHHHHcCCeEEeecHHHHHHHHhcCCCCCCCccCccEEEeecCCCChhhHHHHH
Q 006121 414 I-LFSSFLNGATLALYQGSPLERSFGKFVQDAGVTVLGTVPSLVKAWRNTNCLEGLDWTKIRSFASTGETSNVDDDLWLS 492 (660)
Q Consensus 414 ~-~~~~l~~G~~lv~~~~~~~~~~l~~~i~~~~vt~l~~~P~~l~~l~~~~~~~~~~l~~lr~v~~gGe~l~~~~~~~~~ 492 (660)
. ++.++ .|+++++.+ .+++..+++.|+++++|+++++|++++.|.+.......++++||.+++|||++++++.+++.
T Consensus 253 ~~~~~~l-~G~~~v~~~-~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~l~~lr~i~~gG~~l~~~~~~~~~ 330 (548)
T 2d1s_A 253 TTLGYLI-CGFRVVMLT-KFDEETFLKTLQDYKCTSVILVPTLFAILNKSELLNKYDLSNLVEIASGGAPLSKEVGEAVA 330 (548)
T ss_dssp HHHHHHH-TTCEEEECC-CCCHHHHHHHHHHTTEEEEEECHHHHHHHHHCSCGGGSCCTTCCEEEECSSCCCHHHHHHHH
T ss_pred HHHHHHh-cCcEEEEcC-CCCHHHHHHHHHHcCCcEEEecHHHHHHHHhCcccccccccceeEEEEcCccCCHHHHHHHH
Confidence 6 55666 999999987 57899999999999999999999999999987655556789999999999999999999999
Q ss_pred hhCCCCceeccccccccccccccCCcCCCCcccccCcCCCCceEEEEc-CCCCcCCCCCCceeEEEE-e----ccccCCc
Q 006121 493 SKAWYNAIIESCGGTELSSAYIQGSLLQPQAFGAFSTATMTAGLVILD-ECGVPYPDDQPCVGEVGL-F----PLYLGAS 566 (660)
Q Consensus 493 ~~~~~~~l~n~YG~TE~~~~~~~~~~~~~~~~~~iG~p~~~~~~~vld-~~~~~vp~G~~giGel~v-~----~~y~~~~ 566 (660)
+.+++++++|.||+||++..++.. .......+++|+|+++++++|+| ++++++|+|+. |||+| + .||++
T Consensus 331 ~~~~~~~i~~~YG~TE~~~~~~~~-~~~~~~~~~~G~~~~~~~~~i~d~~~~~~~~~g~~--GEl~v~g~~v~~GY~~-- 405 (548)
T 2d1s_A 331 RRFNLPGVRQGYGLTETTSAIIIT-PEGDDKPGASGKVVPLFKAKVIDLDTKKSLGPNRR--GEVCVKGPMLMKGYVN-- 405 (548)
T ss_dssp HHTTCSCCEEEEECGGGSSEEEEC-CTTCCCTTCCBEECTTCEEEEECTTTCCBCCTTCC--EEEEEESTTSCSEETT--
T ss_pred HHcCCCceeeccccccccceeeec-CcccCCCCCCCccCCCceEEEEeCCcCccCCCCCC--eEEEECCHHHhhhhcC--
Confidence 988778899999999998755442 22334567999999999999999 78999999997 99999 3 45555
Q ss_pred ccccCcccccccccccccCCCceeEeeCceEEEecCceEEEEeccCCccccCceeecchHHHHhhcCCCCceeeEEEEEe
Q 006121 567 DRLLNADHEEVYFRGMPMYKGMCLRRHGDIIKRTVGGYIIVQGRADDTMNLGGIKALLLPLTFLSSPRSSFKCLHIYAWL 646 (660)
Q Consensus 567 ~~~~~~~~t~~~f~~~p~~~~~r~y~TGDl~~~~~dG~l~~~GR~dd~iki~G~rv~~~eIE~~L~~~~~V~~a~vv~~~ 646 (660)
+++.|++.|..+ +||+|||+|++|+||+|+|+||+|||||++|+||+|.|||++|.+||+|++|+|+...
T Consensus 406 ----~~~~t~~~f~~~------g~~~TGDl~~~~~dG~l~~~GR~~d~ik~~G~~v~p~eIE~~l~~~p~V~~a~V~~~~ 475 (548)
T 2d1s_A 406 ----NPEATKELIDEE------GWLHTGDIGYYDEEKHFFIVDRLKSLIKYKGYQVPPAELESVLLQHPSIFDAGVAGVP 475 (548)
T ss_dssp ----CHHHHHHHBCTT------SCEEEEEEEEECTTCCEEEEEEGGGCBCBTTCCBCHHHHHHHHHTSTTEEEEEEEEEE
T ss_pred ----ChHHhhhcccCC------cEEEccCEEEEcCCCeEEEeccccceEEECCEEECHHHHHHHHHhCCCccEEEEEEEE
Confidence 778888888543 3999999999999999999999999999999999999999999999999999999877
Q ss_pred ecC-cceeeeecc
Q 006121 647 YFH-KLELIFYFS 658 (660)
Q Consensus 647 ~~~-~~~l~a~~~ 658 (660)
+.. +..+++|+.
T Consensus 476 ~~~~g~~~~a~vv 488 (548)
T 2d1s_A 476 DPVAGELPGAVVV 488 (548)
T ss_dssp ETTTEEEEEEEEE
T ss_pred cCCCCeeeEEEEE
Confidence 654 445677763
No 21
>3c5e_A Acyl-coenzyme A synthetase ACSM2A, mitochondrial; middle-chain acyl-COA synthetase, xenobiotic/medium-chain FA COA ligase; HET: ATP; 1.60A {Homo sapiens} PDB: 2vze_A 3b7w_A* 3day_A* 3eq6_A* 3eyn_A* 3gpc_A* 2wd9_A*
Probab=100.00 E-value=2.4e-68 Score=596.74 Aligned_cols=454 Identities=19% Similarity=0.203 Sum_probs=363.2
Q ss_pred CCcCCCCccchhhhcccccC---cCCCCCCcEEEEEecCCCCCCCceeecHHHHHHHHHHHHHHHHhc--cCCCCEEEEE
Q 006121 165 GTWLPGSVLNIAECCLLPSN---HRRKEDNTVAIVWREDRCDESAVNLMTYKELREQVMLVANALDTM--FSKGDAIAID 239 (660)
Q Consensus 165 ~~~~~~~~~~~~~~~l~~~~---~a~~~pd~~Av~~~~~~~~~~~~~~lTY~eL~~~a~~lA~~L~~~--v~~gd~V~i~ 239 (660)
..|......+....++..++ +|+++|+++|+++.+.. +..+++||+||+++++++|++|++. +++||+|+|+
T Consensus 29 ~~~~~~~~~~~~~~~l~~~a~~~~a~~~p~~~al~~~~~~---g~~~~~Ty~el~~~~~~lA~~L~~~~Gv~~gd~V~i~ 105 (570)
T 3c5e_A 29 GHQEVPAKFNFASDVLDHWADMEKAGKRPPSPALWWVNGK---GKELMWNFRELSENSQQAANVLSGACGLQRGDRVAVV 105 (570)
T ss_dssp CBCCCCSBCCHHHHTHHHHHHHHHTTSSCCCEEEEEECSS---SCEEEEEHHHHHHHHHHHHHHHHTTTCCCTTCEEEEE
T ss_pred ccccCCccccHHHHHHHHHHhhccccCCCCceEEEEEcCC---CceeEEeHHHHHHHHHHHHHHHHHccCCCCCCEEEEE
Confidence 34655555555555555432 23449999999985320 1234899999999999999999986 9999999999
Q ss_pred cCCCHHHHHHHHHHHHcCcEEEecCCCCCHHHHHHHHHhcCeeEEEeecceeecCccccchhhHhccCCC--cEEEEcCC
Q 006121 240 MPMTVRAVIIYLAIILAGYVVVSIADSFAAREIATRLRVSKAKGIFTQDFILRGGRKFPLYSKVLGAAPL--KAIVLPAI 317 (660)
Q Consensus 240 ~~~s~~~vva~lA~lkaGa~~vpl~p~~p~~~l~~~l~~~~~~~il~~~~~~~~~~~~~~~~~~~~~~~~--~~~~v~~~ 317 (660)
++|++++++++|||+++|++++|++|.++.+++.++++++++++||+++... +.+..+....+. .++++...
T Consensus 106 ~~n~~e~~~~~lA~~~~Ga~~vpl~~~~~~~~l~~~l~~~~~~~vi~~~~~~------~~~~~~~~~~~~~~~~~~~~~~ 179 (570)
T 3c5e_A 106 LPRVPEWWLVILGCIRAGLIFMPGTIQMKSTDILYRLQMSKAKAIVAGDEVI------QEVDTVASECPSLRIKLLVSEK 179 (570)
T ss_dssp CCSCHHHHHHHHHHHHHTCEEEECCTTCCHHHHHHHHHHHTCSEEEEETTTH------HHHHHHGGGCTTCCEEEEESSS
T ss_pred cCCCHHHHHHHHHHHHcCeEEEecCCCCCHHHHHHHHHhcCCeEEEechHHH------HHHHHHhhcCCceeEEEEeccc
Confidence 9999999999999999999999999999999999999999999999987532 222222233332 22333211
Q ss_pred CCCCCCCCCCCCcchhhhhccCCCCCCCCCCCCccCCCCCeEEEEecCCCCCCcceEEecchhhHH-HHHHhhHhcCCCC
Q 006121 318 GNDVGIPLREQDLSWKDFLSSVDYHPRPNYYSPVYNPVDAVVNILFSSGTTGEPKAIPWTQLSSIR-CTAEGWAHIDLKV 396 (660)
Q Consensus 318 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~i~~TSGSTG~PKgV~~sh~~l~~-~~~~~~~~~~~~~ 396 (660)
. ..+...+++++..... ........++++|||+|||||||+||||+++|+.+.+ ...+. ..+++++
T Consensus 180 ~-------~~~~~~~~~~~~~~~~-----~~~~~~~~~~d~a~i~~TSGTTG~PKgV~~sh~~~~~~~~~~~-~~~~~~~ 246 (570)
T 3c5e_A 180 S-------CDGWLNFKKLLNEAST-----THHCVETGSQEASAIYFTSGTSGLPKMAEHSYSSLGLKAKMDA-GWTGLQA 246 (570)
T ss_dssp C-------CTTSEEHHHHHHHSCS-----CCCCCCCBTTSEEEEEECCCSSSSCCEEEEEHHHHHHHHHHHT-TTTSCCT
T ss_pred C-------ccccccHHHHhhcccc-----cccccCCCCCCcEEEEECCCCCCCCCEEEechHHHHhhhhhhh-hhcCCCC
Confidence 0 1123456665543322 1122345679999999999999999999999994432 44444 6678899
Q ss_pred CCEEEEecCccccchhh-HHHHhhhcCcEEEEecC-CCChhhHHHHHHHcCCeEEeecHHHHHHHHhcCCCCCCCccCcc
Q 006121 397 GDVYCWPTNLGWVMGPV-ILFSSFLNGATLALYQG-SPLERSFGKFVQDAGVTVLGTVPSLVKAWRNTNCLEGLDWTKIR 474 (660)
Q Consensus 397 ~~~~l~~~~~~~~~~~~-~~~~~l~~G~~lv~~~~-~~~~~~l~~~i~~~~vt~l~~~P~~l~~l~~~~~~~~~~l~~lr 474 (660)
+|++++.+|++|+.+++ .++.++..|+++++.+. .+++..+++.|+++++|+++++|++++.|++.. ....++++||
T Consensus 247 ~d~~~~~~p~~~~~~~~~~~~~~l~~G~~~~~~~~~~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~-~~~~~~~~lr 325 (570)
T 3c5e_A 247 SDIMWTISDTGWILNILCSLMEPWALGACTFVHLLPKFDPLVILKTLSSYPIKSMMGAPIVYRMLLQQD-LSSYKFPHLQ 325 (570)
T ss_dssp TCEEEECCCTTSHHHHHHTTHHHHHHTCEEEEECCSSCCHHHHHHHHHHSCCCEEEECHHHHHHHHTSC-TTTCCCTTCC
T ss_pred CceEEEcCchHHHHHHHHHHHHHHHhCceEEEecCCCCCHHHHHHHHHHhCCeEEeccHHHHHHHHhcc-ccccccccce
Confidence 99999999999999986 68899999999999874 568999999999999999999999999998763 3345689999
Q ss_pred EEEeecCCCChhhHHHHHhhCCCCceeccccccccccccccCCcCCCCcccccCcCCCCceEEEEcCCCCcCCCCCCcee
Q 006121 475 SFASTGETSNVDDDLWLSSKAWYNAIIESCGGTELSSAYIQGSLLQPQAFGAFSTATMTAGLVILDECGVPYPDDQPCVG 554 (660)
Q Consensus 475 ~v~~gGe~l~~~~~~~~~~~~~~~~l~n~YG~TE~~~~~~~~~~~~~~~~~~iG~p~~~~~~~vld~~~~~vp~G~~giG 554 (660)
.+++|||++++++.+++.+.+ +++++|.||+||+++.++.. .......+++|+|+++++++|+|++|+++|.|+. |
T Consensus 326 ~i~~gGe~l~~~~~~~~~~~~-g~~i~~~YG~TE~~~~~~~~-~~~~~~~~~vG~p~~~~~v~i~d~~g~~~~~G~~--G 401 (570)
T 3c5e_A 326 NCVTVGESLLPETLENWRAQT-GLDIRESYGQTETGLTCMVS-KTMKIKPGYMGTAASCYDVQIIDDKGNVLPPGTE--G 401 (570)
T ss_dssp EEEEESSCCCHHHHHHHHHHH-SCCCEEEEEETTTEEEEECC-TTSCCCTTCCCEECTTCCEEEECTTSCBCCTTCC--E
T ss_pred EEEEcCCcCCHHHHHHHHHHh-CCchhhccchhhcccceecC-cccccCCCcccccCCCceEEEECCCCCCCCCCCC--C
Confidence 999999999999999998876 58899999999998654432 2233456799999999999999999999999997 9
Q ss_pred EEEEe------c----cccCCcccccCcccccccccccccCCCceeEeeCceEEEecCceEEEEeccCCccccCceeecc
Q 006121 555 EVGLF------P----LYLGASDRLLNADHEEVYFRGMPMYKGMCLRRHGDIIKRTVGGYIIVQGRADDTMNLGGIKALL 624 (660)
Q Consensus 555 el~v~------~----~y~~~~~~~~~~~~t~~~f~~~p~~~~~r~y~TGDl~~~~~dG~l~~~GR~dd~iki~G~rv~~ 624 (660)
||+|. + ||++ +++.|+++|. .+||+|||+|++|+||+|+|+||+|||||++|+||+|
T Consensus 402 El~v~~~~~~g~~v~~GY~~------~~~~t~~~f~-------~~~~~TGDlg~~d~dG~l~~~GR~dd~Ik~~G~~V~p 468 (570)
T 3c5e_A 402 DIGIRVKPIRPIGIFSGYVD------NPDKTAANIR-------GDFWLLGDRGIKDEDGYFQFMGRADDIINSSGYRIGP 468 (570)
T ss_dssp EEEEECSSBCCTTCCCEETT------CHHHHHHTEE-------TTEEEEEEEEEECTTSCEEEEEEGGGCEEETTEEECH
T ss_pred eeEEeccCCCCchhhccccC------ChhHhhhhhc-------CCccccceeEEEcCCceEEEEecCCCEEEECCEEECH
Confidence 99994 2 3443 6788888885 2399999999999999999999999999999999999
Q ss_pred hHHHHhhcCCCCceeeEEEEEeecC-cceeeeecc
Q 006121 625 LPLTFLSSPRSSFKCLHIYAWLYFH-KLELIFYFS 658 (660)
Q Consensus 625 ~eIE~~L~~~~~V~~a~vv~~~~~~-~~~l~a~~~ 658 (660)
.|||++|.+||+|++|+|+...+.. +..+++|+.
T Consensus 469 ~eIE~~l~~~p~V~~a~Vv~~~~~~~g~~~~a~vv 503 (570)
T 3c5e_A 469 SEVENALMEHPAVVETAVISSPDPVRGEVVKAFVV 503 (570)
T ss_dssp HHHHHHHHTSTTEEEEEEEEEEETTTEEEEEEEEE
T ss_pred HHHHHHHHhCCCcceEEEEeeeCCCCCeEEEEEEE
Confidence 9999999999999999999877654 455677764
No 22
>3rix_A Luciferase, luciferin 4-monooxygenase; oxidoreductase, photoprotein, luminescence, aspulvinone, natural product extracts; HET: 923; 1.70A {Photinus pyralis} SCOP: e.23.1.1 PDB: 1ba3_A 1lci_A* 4e5d_A* 3ies_A* 3iep_A* 3ier_A* 4g36_A* 4g37_A* 3qya_A
Probab=100.00 E-value=7e-70 Score=607.75 Aligned_cols=439 Identities=15% Similarity=0.130 Sum_probs=309.5
Q ss_pred CCCCCCcEEEE---EecCCCCCCCceeecHHHHHHHHHHHHHHHHhc-cCCCCEEEEEcCCCHHHHHHHHHHHHcCcEEE
Q 006121 186 RRKEDNTVAIV---WREDRCDESAVNLMTYKELREQVMLVANALDTM-FSKGDAIAIDMPMTVRAVIIYLAIILAGYVVV 261 (660)
Q Consensus 186 a~~~pd~~Av~---~~~~~~~~~~~~~lTY~eL~~~a~~lA~~L~~~-v~~gd~V~i~~~~s~~~vva~lA~lkaGa~~v 261 (660)
++++|+++|++ +... .+++||+||+++++++|++|++. +++||+|+|+++|++++++++|||+++|++++
T Consensus 30 a~~~p~~~a~~a~~~~~~------~~~~Ty~el~~~~~~lA~~L~~~Gv~~gd~V~i~~~n~~e~~~~~lA~~~~Gav~v 103 (550)
T 3rix_A 30 MKRYALVPGTIAFTDAHI------EVNITYAEYFEMSVRLAEAMKRYGLNTNHRIVVCSENSLQFFMPVLGALFIGVAVA 103 (550)
T ss_dssp HHHHHTSTTCEEEEETTT------CCEEEHHHHHHHHHHHHHHHHHHTCCTTCEEEEECSSCTTTHHHHHHHHHHTCEEE
T ss_pred HHhCCCCceEEEeeecCC------CcEeEHHHHHHHHHHHHHHHHHhCCCCCCEEEEEcCCcccHHHHHHHHHHcCCEEe
Confidence 36788888865 3211 13899999999999999999999 99999999999999999999999999999999
Q ss_pred ecCCCCCHHHHHHHHHhcCeeEEEeecceeecCccccchhhHhccCCCc-EEEEcCCCCCCCCCCCCCCcchhhhhccCC
Q 006121 262 SIADSFAAREIATRLRVSKAKGIFTQDFILRGGRKFPLYSKVLGAAPLK-AIVLPAIGNDVGIPLREQDLSWKDFLSSVD 340 (660)
Q Consensus 262 pl~p~~p~~~l~~~l~~~~~~~il~~~~~~~~~~~~~~~~~~~~~~~~~-~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~ 340 (660)
|++|.++.+++.+++++++++++|+++... +.........+.. .+++...... ..+..++.++.....
T Consensus 104 pl~~~~~~~~l~~~l~~~~~~~vi~~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~ 172 (550)
T 3rix_A 104 PANDIYNERELLNSMNISQPTVVFVSKKGL------QKILNVQKKLPIIQKIIIMDSKTD-----YQGFQSMYTFVTSHL 172 (550)
T ss_dssp ECCTTCCHHHHHHHHHHHCCSEEEECGGGH------HHHHHHHHHCTTCCEEEETTCSSC-----BTTBCBHHHHHHHHC
T ss_pred ecCCcCCHHHHHHHHHhcCCeEEEEcHHHH------HHHHHHHhhCCCcceEEEEcCCcc-----ccCcccHHHHhhccc
Confidence 999999999999999999999999997532 2223333333322 2222211110 123344555544322
Q ss_pred CCCC-C-CCCCCccCCCCCeEEEEecCCCCCCcceEEecchhhHHHHHHhhHh---cCCCCCCEEEEecCccccchhhHH
Q 006121 341 YHPR-P-NYYSPVYNPVDAVVNILFSSGTTGEPKAIPWTQLSSIRCTAEGWAH---IDLKVGDVYCWPTNLGWVMGPVIL 415 (660)
Q Consensus 341 ~~~~-~-~~~~~~~~~~~~~a~i~~TSGSTG~PKgV~~sh~~l~~~~~~~~~~---~~~~~~~~~l~~~~~~~~~~~~~~ 415 (660)
.... . ...+.....++++|||+|||||||+||||+++|+++.+.+.+.... +++.+++++++.+|++|+.+++.+
T Consensus 173 ~~~~~~~~~~~~~~~~~~d~a~i~~TSGTTG~PKgV~~th~~~~~~~~~~~~~~~~~~~~~~~~~l~~~p~~~~~g~~~~ 252 (550)
T 3rix_A 173 PPGFNEYDFVPESFDRDKTIALIMNSSGSTGLPKGVALPHRTACVRFSHARDPIFGNQIIPDTAILSVVPFHHGFGMFTT 252 (550)
T ss_dssp CTTCCTTTCCCCCCCTTTSEEEEEEC-----CCCEEEEEHHHHHHHHHHHTCTTTSCCCCTTCEEEECSCTTSHHHHHHH
T ss_pred cccccccccCCCCCCCCCCEEEEEECCCcccCcchhhhhHHHHHHHHHHhhhhhccccCCCCcEEEEechHHHHHHHHHH
Confidence 1000 0 0111122345789999999999999999999999998887766554 568899999999999999999989
Q ss_pred HHhhhcCcEEEEecCCCChhhHHHHHHHcCCeEEeecHHHHHHHHhcCCCCCCCccCccEEEeecCCCChhhHHHHHhhC
Q 006121 416 FSSFLNGATLALYQGSPLERSFGKFVQDAGVTVLGTVPSLVKAWRNTNCLEGLDWTKIRSFASTGETSNVDDDLWLSSKA 495 (660)
Q Consensus 416 ~~~l~~G~~lv~~~~~~~~~~l~~~i~~~~vt~l~~~P~~l~~l~~~~~~~~~~l~~lr~v~~gGe~l~~~~~~~~~~~~ 495 (660)
+.+++.|+++++.+ .+++..+++.|+++++|+++++|+++..|++.......++++||.+++|||++++++.+++.+.+
T Consensus 253 ~~~l~~G~~~~~~~-~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~l~~lr~i~~gG~~l~~~~~~~~~~~~ 331 (550)
T 3rix_A 253 LGYLICGFRVVLMY-RFEEELFLRSLQDYKIQSALLVPTLFSFFAKSTLIDKYDLSNLHEIASGGAPLSKEVGEAVAKRF 331 (550)
T ss_dssp HHHHHHTCEEEECS-SCCHHHHHHHHHHTTCSEEEECHHHHHHHHHCCGGGGSCCTTCCEEEECSSCCCHHHHHHHHHHT
T ss_pred HHHHHcCCEEEEeC-CCCHHHHHHHHHHcCCeEEEeCcHHHHHHHhCccccccCcccccEEEEecCCCCHHHHHHHHHHc
Confidence 99999999999986 57899999999999999999999999999988766677899999999999999999999999888
Q ss_pred CCCceeccccccccccccccCCcCCCCcccccCcCCCCceEEEEc-CCCCcCCCCCCceeEEEE-----eccccCCcccc
Q 006121 496 WYNAIIESCGGTELSSAYIQGSLLQPQAFGAFSTATMTAGLVILD-ECGVPYPDDQPCVGEVGL-----FPLYLGASDRL 569 (660)
Q Consensus 496 ~~~~l~n~YG~TE~~~~~~~~~~~~~~~~~~iG~p~~~~~~~vld-~~~~~vp~G~~giGel~v-----~~~y~~~~~~~ 569 (660)
+...++|.||+||+++.++... ......+++|+|+++++++|+| ++++++|.|+. |||+| +.||++
T Consensus 332 ~~~~v~~~YG~TE~~~~~~~~~-~~~~~~~~vG~~~~~~~~~i~d~~~~~~~~~g~~--GEl~v~g~~v~~GY~~----- 403 (550)
T 3rix_A 332 HLPGIRQGYGLTETTSAILITP-EGDDKPGAVGKVVPFFEAKVVDLDTGKTLGVNQR--GELCVRGPMIMSGYVN----- 403 (550)
T ss_dssp TCSCCEEEEECGGGSSEEEECC-TTCCCTTEEEEECTTCEEEEECTTTCCBCCTTCC--EEEEEESTTSCSEETT-----
T ss_pred CCCccccccCcCccccceecCC-CCCCCCCCcccccCCcEEEEEeCCCCcCCCCCCC--eEEEEeCCCcchhhcC-----
Confidence 7556999999999997654433 3345668999999999999999 67999999997 99999 345655
Q ss_pred cCcccccccccccccCCCceeEeeCceEEEecCceEEEEeccCCccccCceeecchHHHHhhcCCCCceeeEEEEEeecC
Q 006121 570 LNADHEEVYFRGMPMYKGMCLRRHGDIIKRTVGGYIIVQGRADDTMNLGGIKALLLPLTFLSSPRSSFKCLHIYAWLYFH 649 (660)
Q Consensus 570 ~~~~~t~~~f~~~p~~~~~r~y~TGDl~~~~~dG~l~~~GR~dd~iki~G~rv~~~eIE~~L~~~~~V~~a~vv~~~~~~ 649 (660)
+++.|++.|..+ +||+|||+|++++||+|+|+||+|||||++|+||+|.|||++|.+||+|++|+|+...+..
T Consensus 404 -~~~~t~~~~~~~------g~~~TGDl~~~~~dG~l~~~GR~dd~ik~~G~~v~p~eIE~~l~~~p~V~~a~vv~~~~~~ 476 (550)
T 3rix_A 404 -NPEATNALIDKD------GWLHSGDIAYWDEDEHFFIVDRLKSLIKYKGYQVAPAELESILLQHPNIFDAGVAGLPDDD 476 (550)
T ss_dssp -CHHHHHHHBCTT------SCEEEEEEEEECTTCCEEEC-----------------------------------------
T ss_pred -ChhhhhhhcCCC------CCeecCcEEEEeCCceEEEEecchheeEECCEEECHHHHHHHHHhCCCcceEEEEEeecCC
Confidence 778888888543 3999999999999999999999999999999999999999999999999999988765543
Q ss_pred c-ceeeeec
Q 006121 650 K-LELIFYF 657 (660)
Q Consensus 650 ~-~~l~a~~ 657 (660)
. ..+++|+
T Consensus 477 ~g~~~~a~v 485 (550)
T 3rix_A 477 AGELPAAVV 485 (550)
T ss_dssp ---------
T ss_pred CCceEEEEE
Confidence 3 3344443
No 23
>3l8c_A D-alanine--poly(phosphoribitol) ligase subunit 1; structural genomics, DLTA, ATP-binding, cytoplasm, nucleotide-binding; 2.41A {Streptococcus pyogenes serotype M6} PDB: 3lgx_A*
Probab=100.00 E-value=3.6e-69 Score=598.55 Aligned_cols=423 Identities=16% Similarity=0.115 Sum_probs=345.6
Q ss_pred cCCCCCCcEEEEEecCCCCCCCceeecHHHHHHHHHHHHHHHHhc-cCCCCEEEEEcCCCHHHHHHHHHHHHcCcEEEec
Q 006121 185 HRRKEDNTVAIVWREDRCDESAVNLMTYKELREQVMLVANALDTM-FSKGDAIAIDMPMTVRAVIIYLAIILAGYVVVSI 263 (660)
Q Consensus 185 ~a~~~pd~~Av~~~~~~~~~~~~~~lTY~eL~~~a~~lA~~L~~~-v~~gd~V~i~~~~s~~~vva~lA~lkaGa~~vpl 263 (660)
+++++|+++|+.+.++ ++||+||+++++++|++|++. +++||+|+|+++|++++++++|||+++|++++|+
T Consensus 13 ~a~~~p~~~a~~~~~~--------~~Ty~el~~~~~~lA~~L~~~g~~~gd~V~i~~~n~~~~~~~~lA~~~~G~v~vpl 84 (521)
T 3l8c_A 13 FAQTQADFPVYDCLGE--------RRTYGQLKRDSDSIAAFIDSLALLAKSPVLVFGAQTYDMLATFVALTKSGHAYIPV 84 (521)
T ss_dssp HHHHSTTSEEEEETTE--------EEEHHHHHHHHHHHHHHHHHTCCCTTCCEEEEECSSHHHHHHHHHHHHTTCCEEEE
T ss_pred HHHHCCCCcceecCCC--------eecHHHHHHHHHHHHHHHHHcCCCCCCEEEEEeCCCHHHHHHHHHHHHhCCEEEec
Confidence 3478999999999887 999999999999999999999 9999999999999999999999999999999999
Q ss_pred CCCCCHHHHHHHHHhcCeeEEEeecceeecCccccchhhHhccCCCcEEEEcCCCCCCCCCCCCCCcchhhhhccCCCCC
Q 006121 264 ADSFAAREIATRLRVSKAKGIFTQDFILRGGRKFPLYSKVLGAAPLKAIVLPAIGNDVGIPLREQDLSWKDFLSSVDYHP 343 (660)
Q Consensus 264 ~p~~p~~~l~~~l~~~~~~~il~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 343 (660)
+|.++.+++.+++++++++++|+++......... ....+.++......
T Consensus 85 ~~~~~~~~l~~il~~~~~~~ii~~~~~~~~~~~~------------------------------~~~~~~~~~~~~~~-- 132 (521)
T 3l8c_A 85 DVHSAPERILAIIEIAKPSLIIAIEEFPLTIEGI------------------------------SLVSLSEIESAKLA-- 132 (521)
T ss_dssp ETTSCHHHHHHHHHHSCCSEEEESSCCCSCCTTS------------------------------EEEEHHHHHHHHHH--
T ss_pred CccccHHHHHHHHHhCCCCEEEecCccccccccC------------------------------cccchhhhhhcccc--
Confidence 9999999999999999999999987542111100 00112221111000
Q ss_pred CCCCCCCccCCCCCeEEEEecCCCCCCcceEEecchhhHHHHHHhhHh--cCCCCCCEEEEecCccccchhhHHHHhhhc
Q 006121 344 RPNYYSPVYNPVDAVVNILFSSGTTGEPKAIPWTQLSSIRCTAEGWAH--IDLKVGDVYCWPTNLGWVMGPVILFSSFLN 421 (660)
Q Consensus 344 ~~~~~~~~~~~~~~~a~i~~TSGSTG~PKgV~~sh~~l~~~~~~~~~~--~~~~~~~~~l~~~~~~~~~~~~~~~~~l~~ 421 (660)
...........+++++||+|||||||+||||+++|+++.+.+.+.... +++.+++++++..|++|+.+++.++.+++.
T Consensus 133 ~~~~~~~~~~~~~d~a~i~~TSGTTG~PKgV~~sh~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~l~~ 212 (521)
T 3l8c_A 133 EMPYERTHSVKGDDNYYIIFTSGTTGQPKGVQISHDNLLSFTNWMIEDAAFDVPKQPQMLAQPPYSFDLSVMYWAPTLAL 212 (521)
T ss_dssp TCCCCCSSCCCTTSEEEEEECCC---CCCEEEEEHHHHHHHHHHHHHCTTTCCCSSCEEECCSCTTSGGGHHHHHHHHHT
T ss_pred cCCcccCCCCCCCCcEEEEEcCCCCCCCCEEEEehHHHHHHHHHHhhccccCCCCCCeEEecCCccHHHHHHHHHHHHhc
Confidence 001112234578999999999999999999999999999887776655 678899999999999999999889999999
Q ss_pred CcEEEEecCC--CChhhHHHHHHHcCCeEEeecHHHHHHHHhcCCCCCCCccCccEEEeecCCCChhhHHHHHhhCCCCc
Q 006121 422 GATLALYQGS--PLERSFGKFVQDAGVTVLGTVPSLVKAWRNTNCLEGLDWTKIRSFASTGETSNVDDDLWLSSKAWYNA 499 (660)
Q Consensus 422 G~~lv~~~~~--~~~~~l~~~i~~~~vt~l~~~P~~l~~l~~~~~~~~~~l~~lr~v~~gGe~l~~~~~~~~~~~~~~~~ 499 (660)
|+++++.+.. .++..+++.|+++++|++.++|+++..+.........++++||.+++||+++++++.+++.+.+++++
T Consensus 213 G~~~~~~~~~~~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~~~~lr~~~~gG~~l~~~~~~~~~~~~~~~~ 292 (521)
T 3l8c_A 213 GGTLFALPKELVADFKQLFTTIAQLPVGIWTSTPSFADMAMLSDDFCQAKMPALTHFYFDGEELTVSTARKLFERFPSAK 292 (521)
T ss_dssp TCEEEECCGGGTTCHHHHHHHHHHSCCSEEEECHHHHHHHHTSTTCSTTTCTTCCEEEECSSCCCHHHHHHHHHHCTTCE
T ss_pred CCEEEEcCHHHhhCHHHHHHHHHHcCCcEEEeCCCHHHHHhhhhccccccCccceEEEEecccCCHHHHHHHHHHCCCce
Confidence 9999998743 37889999999999999999999999998876666677899999999999999999999999988899
Q ss_pred eeccccccccccccccCCcC----CCCcccccCcCCCCceEEEEcCCCCcCCCCCCceeEEEE-e----ccccCCccccc
Q 006121 500 IIESCGGTELSSAYIQGSLL----QPQAFGAFSTATMTAGLVILDECGVPYPDDQPCVGEVGL-F----PLYLGASDRLL 570 (660)
Q Consensus 500 l~n~YG~TE~~~~~~~~~~~----~~~~~~~iG~p~~~~~~~vld~~~~~vp~G~~giGel~v-~----~~y~~~~~~~~ 570 (660)
++|.||+||+++.++..... .....+++|+|+++++++|+|++|+++|.|+. |||+| + .||++
T Consensus 293 i~~~YG~TE~~~~~~~~~~~~~~~~~~~~~~vG~p~~~~~~~i~d~~g~~~~~g~~--GEl~v~g~~v~~GY~~------ 364 (521)
T 3l8c_A 293 IINAYGPTEATVALSAIEITREMVDNYTRLPIGYPKPDSPTYIIDEDGKELSSGEQ--GEIIVTGPAVSKGYLN------ 364 (521)
T ss_dssp EEEEECCGGGSSCSEEEEECHHHHHHCSSCEEEEECTTSCEEEECTTSCBCCTTCC--EEEEEESTTSCSCBTT------
T ss_pred EEeCcCccHHhhhhceeecccccccCCCccccccccCCCEEEEECCCcCCCCCCCc--eEEEecccccChhhcC------
Confidence 99999999998754432221 12244689999999999999999999999997 99999 3 45555
Q ss_pred CcccccccccccccCCCceeEeeCceEEEecCceEEEEeccCCccccCceeecchHHHHhhcCCCCceeeEEEEEeecC-
Q 006121 571 NADHEEVYFRGMPMYKGMCLRRHGDIIKRTVGGYIIVQGRADDTMNLGGIKALLLPLTFLSSPRSSFKCLHIYAWLYFH- 649 (660)
Q Consensus 571 ~~~~t~~~f~~~p~~~~~r~y~TGDl~~~~~dG~l~~~GR~dd~iki~G~rv~~~eIE~~L~~~~~V~~a~vv~~~~~~- 649 (660)
+++.|++.|... ++.+||+|||+|++|+||+|+|+||+||+||++|+||+|.|||++|.+||+|.+|+|+...+..
T Consensus 365 ~~~~t~~~f~~~---~~~~~~~TGDlg~~d~dG~l~~~GR~~d~i~~~G~~v~p~eIE~~l~~~p~V~~a~vv~~~~~~~ 441 (521)
T 3l8c_A 365 NPEKTAEAFFTF---KGQPAYHTGDIGSLTEDNILLYGGRLDFQIKYAGYRIELEDVSQQLNQSPMVASAVAVPRYNKEH 441 (521)
T ss_dssp CHHHHHHHEEEE---TTEEEEEEEEEEEECSSSCEEEEEEGGGBCC-----CBHHHHHHHHHTSTTEEEEEEECCCSSSC
T ss_pred CchHhhccCcCC---CCceeeeCCCEEEEeCCCeEEEeCcccceEeECCEEeCHHHHHHHHHcCCCcceEEEEEeecCCC
Confidence 788899988643 3567999999999999999999999999999999999999999999999999999888654332
Q ss_pred -cceeeeecc
Q 006121 650 -KLELIFYFS 658 (660)
Q Consensus 650 -~~~l~a~~~ 658 (660)
+..+++|+.
T Consensus 442 ~~~~~~a~vv 451 (521)
T 3l8c_A 442 KVQNLLAYIV 451 (521)
T ss_dssp C---CEEEEE
T ss_pred CceEEEEEEE
Confidence 356777764
No 24
>2v7b_A Benzoate-coenzyme A ligase; benzoate oxidation, benzoate COA ligase; 1.84A {Burkholderia xenovorans}
Probab=100.00 E-value=3.6e-68 Score=591.50 Aligned_cols=441 Identities=19% Similarity=0.186 Sum_probs=345.8
Q ss_pred chhhhcccccCcCCCCCCcEEEEEecCCCCCCCceeecHHHHHHHHHHHHHHHHhc-cCCCCEEEEEcCCCHHHHHHHHH
Q 006121 174 NIAECCLLPSNHRRKEDNTVAIVWREDRCDESAVNLMTYKELREQVMLVANALDTM-FSKGDAIAIDMPMTVRAVIIYLA 252 (660)
Q Consensus 174 ~~~~~~l~~~~~a~~~pd~~Av~~~~~~~~~~~~~~lTY~eL~~~a~~lA~~L~~~-v~~gd~V~i~~~~s~~~vva~lA 252 (660)
+....++..++ + +|+++|+++.+. ++||+||+++++++|++|++. +++||+|+|+++|++++++++||
T Consensus 24 ~~~~~~l~~~~--~-~p~~~A~~~~~~--------~~Ty~el~~~~~~lA~~L~~~Gv~~gd~V~i~~~n~~~~~~~~lA 92 (529)
T 2v7b_A 24 NFAAYLFRLNE--T-RAGKTAYIDDTG--------STTYGELEERARRFASALRTLGVHPEERILLVMLDTVALPVAFLG 92 (529)
T ss_dssp CHHHHHHHHTG--G-GTTSEEEECSSC--------EEEHHHHHHHHHHHHHHHHHTTCCTTCEEEEECCSSTHHHHHHHH
T ss_pred eHHHHHHHhhh--c-cCCceEEEeCCC--------CccHHHHHHHHHHHHHHHHHcCCCCCCEEEEEcCCcHHHHHHHHH
Confidence 33344444433 6 999999998766 999999999999999999999 99999999999999999999999
Q ss_pred HHHcCcEEEecCCCCCHHHHHHHHHhcCeeEEEeecceeecCccccchhhHhccCC---CcEEEEcCCCCCCCCCCCCCC
Q 006121 253 IILAGYVVVSIADSFAAREIATRLRVSKAKGIFTQDFILRGGRKFPLYSKVLGAAP---LKAIVLPAIGNDVGIPLREQD 329 (660)
Q Consensus 253 ~lkaGa~~vpl~p~~p~~~l~~~l~~~~~~~il~~~~~~~~~~~~~~~~~~~~~~~---~~~~~v~~~~~~~~~~~~~~~ 329 (660)
|+++|++++|++|.++.+++.+++++++++++|++.... +.........+ ..++++..... .....
T Consensus 93 ~~~~G~~~vpl~~~~~~~~l~~~l~~~~~~~vi~~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~ 161 (529)
T 2v7b_A 93 ALYAGVVPVVANTLLTPADYVYMLTHSHARAVIASGALV------QNVTQALESAEHDGCQLIVSQPRES-----EPRLA 161 (529)
T ss_dssp HHHHTCEEEECCTTCCHHHHHHHHHHHTCSEEEEEGGGH------HHHHHHHHCC---CCEEEEECC-----------CC
T ss_pred HHHcCceEEecCcccCHHHHHHHHhccCCeEEEechhhh------hHHHHHHhhccccCceEEEeccccc-----ccccc
Confidence 999999999999999999999999999999999987532 11222221111 12222221100 00011
Q ss_pred cchhhhhccCCCCCCCCCCCCccCCCCCeEEEEecCCCCCCcceEEecchhh-HHHHHHhhHhcCCCCCCEEEEecCccc
Q 006121 330 LSWKDFLSSVDYHPRPNYYSPVYNPVDAVVNILFSSGTTGEPKAIPWTQLSS-IRCTAEGWAHIDLKVGDVYCWPTNLGW 408 (660)
Q Consensus 330 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~i~~TSGSTG~PKgV~~sh~~l-~~~~~~~~~~~~~~~~~~~l~~~~~~~ 408 (660)
..++++...... ........+++++||+|||||||+||||+++|+++ .+...+....++++++|++++.+|++|
T Consensus 162 ~~~~~~~~~~~~-----~~~~~~~~~~d~a~i~~TSGTTG~PKgv~~sh~~l~~~~~~~~~~~~~~~~~d~~~~~~p~~~ 236 (529)
T 2v7b_A 162 PLFEELIDAAAP-----AAKAAATGCDDIAFWLYSSGSTGKPKGTVHTHANLYWTAELYAKPILGIAENDVVFSAAKLFF 236 (529)
T ss_dssp CBHHHHHHTSCC-----CSSCCCCCTTSEEEEEEC-----CCCEEEEEHHHHHHHHHHTCCCCCCCCTTCEEEESSCTTS
T ss_pred cchhhhhccCCC-----cccccCCCCCCeEEEEECCCCCCCCceEEEEhhHHHHHHHHHhhhccCCCCCcEEEEeecHHH
Confidence 245555542221 11223456799999999999999999999999999 666666556678899999999999999
Q ss_pred cchhh-HHHHhhhcCcEEEEecCCCChhhHHHHHHHcCCeEEeecHHHHHHHHhcCCCCCCCccCccEEEeecCCCChhh
Q 006121 409 VMGPV-ILFSSFLNGATLALYQGSPLERSFGKFVQDAGVTVLGTVPSLVKAWRNTNCLEGLDWTKIRSFASTGETSNVDD 487 (660)
Q Consensus 409 ~~~~~-~~~~~l~~G~~lv~~~~~~~~~~l~~~i~~~~vt~l~~~P~~l~~l~~~~~~~~~~l~~lr~v~~gGe~l~~~~ 487 (660)
+.++. .++.+|..|+++++.+..+++..+++.|+++++|+++++|+++..|++..........+||.+++|||++++++
T Consensus 237 ~~g~~~~~~~~l~~G~~~v~~~~~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~~~~lr~~~~gGe~l~~~~ 316 (529)
T 2v7b_A 237 AYGLGNGLTFPLSVGATAILMAERPTADAIFARLVEHRPTVFYGVPTLYANMLVSPNLPARADVAIRICTSAGEALPREI 316 (529)
T ss_dssp HHHHHHHTHHHHHHTCEEECCCSCCCHHHHHHHHHHSCCSEEEECHHHHHHHHTCTTCCCGGGCCCCEEEECSSCCCHHH
T ss_pred HHHHHHHHHHHHhcCcEEEEecCCCCHHHHHHHHHHhCCEEEEecHHHHHHHHhCcccccccCCceEEEEEcCCCCCHHH
Confidence 99985 46789999999999865678999999999999999999999999998765433321248999999999999999
Q ss_pred HHHHHhhCCCCceeccccccccccccccCCcCCCCcccccCcCCCCceEEEEcCCCCcCCCCCCceeEEEE-e----ccc
Q 006121 488 DLWLSSKAWYNAIIESCGGTELSSAYIQGSLLQPQAFGAFSTATMTAGLVILDECGVPYPDDQPCVGEVGL-F----PLY 562 (660)
Q Consensus 488 ~~~~~~~~~~~~l~n~YG~TE~~~~~~~~~~~~~~~~~~iG~p~~~~~~~vld~~~~~vp~G~~giGel~v-~----~~y 562 (660)
.+++.+.+ +++++|.||+||++.+++.... .....+++|+|++|++++|+|++|+++|.|+. |||+| + .||
T Consensus 317 ~~~~~~~~-g~~i~~~YG~TE~~~~~~~~~~-~~~~~~~~G~p~~~~~~~i~d~~g~~~~~g~~--GEl~v~g~~~~~gY 392 (529)
T 2v7b_A 317 GERFTAHF-GCEILDGIGSTEMLHIFLSNRA-GAVEYGTTGRPVPGYEIELRDEAGHAVPDGEV--GDLYIKGPSAAVMY 392 (529)
T ss_dssp HHHHHHHH-SCCEEEEEECTTTSSEEEECCT-TCCCTTSCCEECTTCEEEEECTTSCBCCTTSC--EEEEEECTTCCCCB
T ss_pred HHHHHHHh-CCceeeeEchhhcCceeecccc-CCCccCCcccCCCCCEEEEECCCCCCCCCCCc--cEEEEecCCccccc
Confidence 99998876 5889999999999754443322 22456789999999999999999999999996 99999 3 345
Q ss_pred cCCcccccCcccccccccccccCCCceeEeeCceEEEecCceEEEEeccCCccccCceeecchHHHHhhcCCCCceeeEE
Q 006121 563 LGASDRLLNADHEEVYFRGMPMYKGMCLRRHGDIIKRTVGGYIIVQGRADDTMNLGGIKALLLPLTFLSSPRSSFKCLHI 642 (660)
Q Consensus 563 ~~~~~~~~~~~~t~~~f~~~p~~~~~r~y~TGDl~~~~~dG~l~~~GR~dd~iki~G~rv~~~eIE~~L~~~~~V~~a~v 642 (660)
++ +++.|++.|. .+||+|||+|++++||+|+|+||+|||||++|+||+|.|||++|.+||+|++++|
T Consensus 393 ~~------~~~~t~~~f~-------~~~~~TGDl~~~~~~G~l~~~GR~dd~ik~~G~~v~p~eIE~~l~~~p~V~~~~v 459 (529)
T 2v7b_A 393 WN------NREKSRATFL-------GEWIRSGDKYCRLPNGCYVYAGRSDDMLKVSGQYVSPVEVEMVLVQHDAVLEAAV 459 (529)
T ss_dssp TT------CHHHHHHHEE-------TTEEEEEEEEEECTTSCEEEEEEGGGCBC----CBCHHHHHHHHTTSTTEEEEEE
T ss_pred CC------ChHHHHHhhh-------cCCcccCceEEECCCccEEEeCccCCeEEECCEEECHHHHHHHHHhCCCcceEEE
Confidence 54 7788888886 2399999999999999999999999999999999999999999999999999999
Q ss_pred EEEeecCcceeeeecc
Q 006121 643 YAWLYFHKLELIFYFS 658 (660)
Q Consensus 643 v~~~~~~~~~l~a~~~ 658 (660)
+......+..+++|+.
T Consensus 460 v~~~~~~~~~~~a~vv 475 (529)
T 2v7b_A 460 VGVDHGGLVKTRAFVV 475 (529)
T ss_dssp EEEEETTEEEEEEEEE
T ss_pred EEecCCCceEEEEEEE
Confidence 8874444556777764
No 25
>3ivr_A Putative long-chain-fatty-acid COA ligase; structural genomics, PSI-2, protein S initiative, fatty acid synthesis; HET: GOL; 2.00A {Rhodopseudomonas palustris} SCOP: e.23.1.0
Probab=100.00 E-value=1.1e-68 Score=592.75 Aligned_cols=424 Identities=14% Similarity=0.088 Sum_probs=308.6
Q ss_pred cCCCCCCcEEEEEecCCCCCCCceeecHHHHHHHHHHHHHHHHhc-cCCCCEEEEEcCCCHHHHHHHHHHHHcCcEEEec
Q 006121 185 HRRKEDNTVAIVWREDRCDESAVNLMTYKELREQVMLVANALDTM-FSKGDAIAIDMPMTVRAVIIYLAIILAGYVVVSI 263 (660)
Q Consensus 185 ~a~~~pd~~Av~~~~~~~~~~~~~~lTY~eL~~~a~~lA~~L~~~-v~~gd~V~i~~~~s~~~vva~lA~lkaGa~~vpl 263 (660)
+++++||++|+++.++ ++||+||+++++++|++|++. +++||+|+|+++|++++++++|||+++|++++|+
T Consensus 15 ~a~~~pd~~Al~~~~~--------~~Ty~eL~~~~~~lA~~L~~~Gv~~gd~V~i~~~~~~~~~~~~lA~~~~Ga~~vpl 86 (509)
T 3ivr_A 15 NAALFPDRTAFMVDGV--------RLTHRDYLARAERLASGLLRDGVHTGDRVAILSQNCSEMIELIGAVALIGAILLPV 86 (509)
T ss_dssp HHHHSTTSEEEEETTE--------EEEHHHHHHHHHHHHHHHHHTTCCTTCEEEEECCSCHHHHHHHHHHHHTTCEEEEC
T ss_pred HHHHCCCceEEEECCc--------EEcHHHHHHHHHHHHHHHHHcCCCCCCEEEEEcCCCHHHHHHHHHHHHhCCEEEec
Confidence 3478999999999877 999999999999999999999 9999999999999999999999999999999999
Q ss_pred CCCCCHHHHHHHHHhcCeeEEEeecceeecCccccchhhHhccCCCcEEEEcCCCCCCCCCCCCCCcchhhhhccCCCCC
Q 006121 264 ADSFAAREIATRLRVSKAKGIFTQDFILRGGRKFPLYSKVLGAAPLKAIVLPAIGNDVGIPLREQDLSWKDFLSSVDYHP 343 (660)
Q Consensus 264 ~p~~p~~~l~~~l~~~~~~~il~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 343 (660)
+|.+|.+++.+++++++++++|++.... +.........+....++.... ....+.++......
T Consensus 87 ~~~~~~~~l~~~l~~~~~~~vi~~~~~~------~~~~~~~~~~~~~~~~~~~~~---------~~~~~~~~~~~~~~-- 149 (509)
T 3ivr_A 87 NYRLNADEIAFVLGDGAPSVVVAGTDYR------DIVAGVLPSLGGVKKAYAIGD---------GSGPFAPFKDLASD-- 149 (509)
T ss_dssp CTTSCHHHHHHHHHHHCEEEEEECSTTH------HHHHHHGGGCSSCCEEEESSC---------CCSSCEEGGGTCCC--
T ss_pred CCCCCHHHHHHHHHhcCceEEEECcchh------hhHHhhhcccCCceEEEEcCC---------CCcChhhHhhccCC--
Confidence 9999999999999999999999987532 111122222222211221111 11122232221111
Q ss_pred CCCCCCCccCCCCCeEEEEecCCCCCCcceEEecchhhHHHHHHhhHhcCCCCCCEEEEecCccccchhhHHHHhhhcCc
Q 006121 344 RPNYYSPVYNPVDAVVNILFSSGTTGEPKAIPWTQLSSIRCTAEGWAHIDLKVGDVYCWPTNLGWVMGPVILFSSFLNGA 423 (660)
Q Consensus 344 ~~~~~~~~~~~~~~~a~i~~TSGSTG~PKgV~~sh~~l~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~l~~G~ 423 (660)
.........+++++||+|||||||+||||+++|+++.+.+.+....++++++|++++.+|++|+.++..++.+++.|+
T Consensus 150 --~~~~~~~~~~~d~a~i~~TSGTTG~PKgV~~sh~~l~~~~~~~~~~~~~~~~d~~l~~~p~~~~~g~~~~~~~~~~~g 227 (509)
T 3ivr_A 150 --TPFSAPEFGAADGFVIIHTAAVGGRPRGALISQGNLLIAQSSLVDAWRLTEADVNLGMLPLFHVTGLGLMLTLQQAGG 227 (509)
T ss_dssp --SCCCCCCCCTTSEEEEEEEEC--CCEEEEEEEHHHHHHHHHHHHHHTTCCTTCEEEECSCTTSHHHHHHHHHHHHHTC
T ss_pred --CCCCcCCCCccccEEEEeCCCCCCCCcEEEEehHHHHHHHHHHHHhhCCCCCcEEEEeCCCcchhHHHHHHHHHHhCC
Confidence 112234567899999999999999999999999999999998888999999999999999999999988888777777
Q ss_pred EEEEecCCCChhhHHHHHHHcCCeEEeecHHHHHHHHhcCCCCCCCccCccEEEeecCCCChhhHHHHHhhCCCCceecc
Q 006121 424 TLALYQGSPLERSFGKFVQDAGVTVLGTVPSLVKAWRNTNCLEGLDWTKIRSFASTGETSNVDDDLWLSSKAWYNAIIES 503 (660)
Q Consensus 424 ~lv~~~~~~~~~~l~~~i~~~~vt~l~~~P~~l~~l~~~~~~~~~~l~~lr~v~~gGe~l~~~~~~~~~~~~~~~~l~n~ 503 (660)
+.++.. .+++..+++.|+++++|++.++|+++..|++.. ...++++||.++.||++ +..+++.+.+++++++|.
T Consensus 228 ~~~~~~-~~~~~~~~~~i~~~~~t~~~~~p~~~~~l~~~~--~~~~l~~lr~~~~~g~~---~~~~~~~~~~~~~~~~~~ 301 (509)
T 3ivr_A 228 ASVIAA-KFDPAQAARDIEAHKVTVMAEFAPMLGNILDQA--APAQLASLRAVTGLDTP---ETIERFEATCPNATFWAT 301 (509)
T ss_dssp EEEECS-SCCHHHHHHHHHHHTCCEEEEETTHHHHHHHHC--CGGGGTTCCEEEEECCH---HHHHHHHHHCTTCEEEEE
T ss_pred cEEEec-ccCHHHHHHHHHHHCCcEEEecHHHHHHHHhcc--cccchhhhheecccCCh---HHHHHHHHhcCCCeEEcc
Confidence 777776 678999999999999999999999999998875 34568899999999987 777888888888999999
Q ss_pred ccccccccccccCCcCCCCcccccCcCCCCceEEEEcCCCCcCCCCCCceeEEEE-----eccccCCcccccCccccccc
Q 006121 504 CGGTELSSAYIQGSLLQPQAFGAFSTATMTAGLVILDECGVPYPDDQPCVGEVGL-----FPLYLGASDRLLNADHEEVY 578 (660)
Q Consensus 504 YG~TE~~~~~~~~~~~~~~~~~~iG~p~~~~~~~vld~~~~~vp~G~~giGel~v-----~~~y~~~~~~~~~~~~t~~~ 578 (660)
||+||++++++..... ....++|+|++|++++|+|++++++|+|+. |||+| +.||++ +++.|++.
T Consensus 302 YG~TE~~~~~~~~~~~--~~~~~~G~p~~~~~~~i~d~~~~~~~~g~~--GEl~v~g~~~~~gY~~------~~~~t~~~ 371 (509)
T 3ivr_A 302 FGQSETSGLSTFAPYR--DRPKSAGRPLFWRTVAVVDAEDRPLPPGEV--GEIVLRGPTVFKGYWN------NAAATQHA 371 (509)
T ss_dssp EEEGGGTEEEEEEEGG--GSTTSCCEECTTCEEEEECTTSCBCCTTCC--EEEEEESTTSCCEETT------CHHHHHHH
T ss_pred cCccccccccccCccc--cCCCcccccCCCcEEEEECCCCCCCCCCCc--eEEEEecCCccccccC------CHHHhHHH
Confidence 9999999755443222 223459999999999999999999999997 99999 345555 78889888
Q ss_pred ccccccCCCceeEeeCceEEEecCceEEEEecc--CCccccCceeecchHHHHhhcCCCCceeeEEEEEeecC-cceeee
Q 006121 579 FRGMPMYKGMCLRRHGDIIKRTVGGYIIVQGRA--DDTMNLGGIKALLLPLTFLSSPRSSFKCLHIYAWLYFH-KLELIF 655 (660)
Q Consensus 579 f~~~p~~~~~r~y~TGDl~~~~~dG~l~~~GR~--dd~iki~G~rv~~~eIE~~L~~~~~V~~a~vv~~~~~~-~~~l~a 655 (660)
|. .+||+|||+|++++||+|+|+||. ||+||++|+||+|.|||++|.+||+|++|+|+...+.. +..+++
T Consensus 372 f~-------~g~~~TGDl~~~~~dG~l~~~GR~d~~d~ik~~G~~v~p~eiE~~l~~~p~V~~a~vv~~~~~~~~~~~~a 444 (509)
T 3ivr_A 372 FR-------NGWHHTGDMGRFDADGYLFYAGRAPEKELIKTGGENVYPAEVEGALKQHPAIADAVVIGVPDPQWSEAIKA 444 (509)
T ss_dssp TG-------GGSEEEEEEEEECTTSCEEEEEEC-----------------------------------------------
T ss_pred hh-------cCCcccccEEEECCCceEEEeCCCCcceeEEECCEEECHHHHHHHHHhCCCceeEEEEeccccccCcEEEE
Confidence 85 239999999999999999999999 99999999999999999999999999999998766544 444555
Q ss_pred ecc
Q 006121 656 YFS 658 (660)
Q Consensus 656 ~~~ 658 (660)
|+.
T Consensus 445 ~v~ 447 (509)
T 3ivr_A 445 VCV 447 (509)
T ss_dssp ---
T ss_pred EEE
Confidence 543
No 26
>3nyq_A Malonyl-COA ligase; A/B topology ababa sandwich beta-barrel adenylate-forming EN fold; HET: MCA AMP; 1.43A {Streptomyces coelicolor} PDB: 3nyr_A*
Probab=100.00 E-value=2e-67 Score=581.24 Aligned_cols=408 Identities=18% Similarity=0.165 Sum_probs=333.4
Q ss_pred cCCCCCC-cEEEEEecCCCCCCCceeecHHHHHHHHHHHHHHHHhccCCCCEEEEEcCCCHHHHHHHHHHHHcCcEEEec
Q 006121 185 HRRKEDN-TVAIVWREDRCDESAVNLMTYKELREQVMLVANALDTMFSKGDAIAIDMPMTVRAVIIYLAIILAGYVVVSI 263 (660)
Q Consensus 185 ~a~~~pd-~~Av~~~~~~~~~~~~~~lTY~eL~~~a~~lA~~L~~~v~~gd~V~i~~~~s~~~vva~lA~lkaGa~~vpl 263 (660)
+++++|+ ++|+++.++ ++||+||+++++++|++|. .|++|+|+++|++++++++|||+|+|++++||
T Consensus 31 ~a~~~p~d~~Al~~~~~--------~~Ty~eL~~~~~~~A~~L~----~~~~V~i~~~~~~~~~~~~la~~~~Ga~~vpl 98 (505)
T 3nyq_A 31 APTGAPADRPALRFGER--------SLTYAELAAAAGATAGRIG----GAGRVAVWATPAMETGVAVVAALLAGVAAVPL 98 (505)
T ss_dssp CCCSGGGGSEEEEETTE--------EEEHHHHHHHHHHHHTTCC-------CEEEECCSSHHHHHHHHHHHHHTCCEEEE
T ss_pred HHHhCCCCCeEEEECCe--------eeeHHHHHHHHHHHHhhcc----CCCEEEEEcCCCHHHHHHHHHHHHhCCEEEEc
Confidence 3467776 999999887 9999999999999998775 48999999999999999999999999999999
Q ss_pred CCCCCHHHHHHHHHhcCeeEEEeecceeecCccccchhhHhccCCCcEEEEcCCCCCCCCCCCCCCcchhhhhccCCCCC
Q 006121 264 ADSFAAREIATRLRVSKAKGIFTQDFILRGGRKFPLYSKVLGAAPLKAIVLPAIGNDVGIPLREQDLSWKDFLSSVDYHP 343 (660)
Q Consensus 264 ~p~~p~~~l~~~l~~~~~~~il~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 343 (660)
||.+|.+++.+++++++++++|++.... .. .... ....+.+...
T Consensus 99 ~~~~~~~~l~~il~~~~~~~vi~~~~~~-----~~---~~~~--~~~~~~~~~~-------------------------- 142 (505)
T 3nyq_A 99 NPKSGDKELAHILSDSAPSLVLAPPDAE-----LP---PALG--ALERVDVDVR-------------------------- 142 (505)
T ss_dssp CTTCCHHHHHHHHHHHCCSEEEECTTCC-----CC---GGGT--TSEEEECCTT--------------------------
T ss_pred CCCCCHHHHHHHHHHCCCCEEEECCccc-----cc---hhhc--cccccccccc--------------------------
Confidence 9999999999999999999999986421 00 0000 0001111000
Q ss_pred CCCCCCCccCCCCCeEEEEecCCCCCCcceEEecchhhHHHHHHhhHhcCCCCCCEEEEecCccccchh-hHHHHhhhcC
Q 006121 344 RPNYYSPVYNPVDAVVNILFSSGTTGEPKAIPWTQLSSIRCTAEGWAHIDLKVGDVYCWPTNLGWVMGP-VILFSSFLNG 422 (660)
Q Consensus 344 ~~~~~~~~~~~~~~~a~i~~TSGSTG~PKgV~~sh~~l~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~-~~~~~~l~~G 422 (660)
.....+.....++++|||+|||||||+||||+++|+++.+.+.+....++++++|++++..|++|..+. +.++.+|+.|
T Consensus 143 ~~~~~~~~~~~~~d~a~i~~TSGTTG~PKgV~~sh~~l~~~~~~~~~~~~~~~~d~~l~~~p~~~~~g~~~~~~~~l~~G 222 (505)
T 3nyq_A 143 ARGAVPEDGADDGDPALVVYTSGTTGPPKGAVIPRRALATTLDALADAWQWTGEDVLVQGLPLFHVHGLVLGILGPLRRG 222 (505)
T ss_dssp CCCCCCCCCCCTTSEEEEEEECCSSSSCEEEEEEHHHHHHHHHHHHHHHTCCTTCEEEECCCTTSHHHHTTTTHHHHHHT
T ss_pred cccCCCCCCCCCCCeEEEEeCCCCcCCCCeEEEeHHHHHHHHHHHHHHhCCCCCcEEEEeccHHHHHHHHHHHHHHHhcC
Confidence 000111234567899999999999999999999999999999988888999999999999999998876 5789999999
Q ss_pred cEEEEecCCCChhhHHHHHHHcCCeEEeecHHHHHHHHhcCCC---CCCCccCccEEEeecCCCChhhHHHHHhhCCCCc
Q 006121 423 ATLALYQGSPLERSFGKFVQDAGVTVLGTVPSLVKAWRNTNCL---EGLDWTKIRSFASTGETSNVDDDLWLSSKAWYNA 499 (660)
Q Consensus 423 ~~lv~~~~~~~~~~l~~~i~~~~vt~l~~~P~~l~~l~~~~~~---~~~~l~~lr~v~~gGe~l~~~~~~~~~~~~~~~~ 499 (660)
+++++.+ .+++..+++.+ ++++|+++++|+++..|++.... ....++++|.+++|||++++++.+++.+.+ +++
T Consensus 223 ~~~~~~~-~~~~~~~~~~i-~~~~t~~~~~P~~~~~l~~~~~~~~~~~~~l~~lr~i~~gg~~l~~~~~~~~~~~~-~~~ 299 (505)
T 3nyq_A 223 GSVRHLG-RFSTEGAAREL-NDGATMLFGVPTMYHRIAETLPADPELAKALAGARLLVSGSAALPVHDHERIAAAT-GRR 299 (505)
T ss_dssp CEEEECS-SCCHHHHHHHH-TTTCCEEEECHHHHHHHHHHGGGCHHHHHHHHHCSEEEECSSCCCHHHHHHHHHHH-SCC
T ss_pred CEEEECC-CCChHHHHHHH-hhCCeEEEehHHHHHHHHHhhhcCchhhcccccceEEEECCCCCCHHHHHHHHHhc-CCe
Confidence 9999986 57888899999 88999999999999999874221 123467899999999999999999988775 589
Q ss_pred eeccccccccccccccCCcCCCCcccccCcCCCCceEEEEcCCCCcCCC---CCCceeEEEE-----eccccCCcccccC
Q 006121 500 IIESCGGTELSSAYIQGSLLQPQAFGAFSTATMTAGLVILDECGVPYPD---DQPCVGEVGL-----FPLYLGASDRLLN 571 (660)
Q Consensus 500 l~n~YG~TE~~~~~~~~~~~~~~~~~~iG~p~~~~~~~vld~~~~~vp~---G~~giGel~v-----~~~y~~~~~~~~~ 571 (660)
++|.||+||+++.++. ........+++|+|++|++++|+|++|++++. |++ |||+| +.||++ +
T Consensus 300 ~~~~YG~TE~~~~~~~-~~~~~~~~~~vG~p~~~~~~~i~d~~g~~~~~~~~g~~--GEl~v~g~~v~~GY~~------~ 370 (505)
T 3nyq_A 300 VIERYGMTETLMNTSV-RADGEPRAGTVGVPLPGVELRLVEEDGTPIAALDGESV--GEIQVRGPNLFTEYLN------R 370 (505)
T ss_dssp CEEEEEETTTEEEEEC-CTTSCCCTTCCCEECTTCEEEEC-----CCCCCCSCCC--EEEEEESTTSCCEETT------C
T ss_pred eecccchhhccccccc-CCCCCCCCCCcccCCCCCEEEEECCCCCCcccCCCCce--EEEEEecCchhhhhCC------C
Confidence 9999999999875443 33334556789999999999999999999987 775 99999 345665 7
Q ss_pred cccccccccccccCCCceeEeeCceEEEecCceEEEEecc-CCccccCceeecchHHHHhhcCCCCceeeEEEEEeecC-
Q 006121 572 ADHEEVYFRGMPMYKGMCLRRHGDIIKRTVGGYIIVQGRA-DDTMNLGGIKALLLPLTFLSSPRSSFKCLHIYAWLYFH- 649 (660)
Q Consensus 572 ~~~t~~~f~~~p~~~~~r~y~TGDl~~~~~dG~l~~~GR~-dd~iki~G~rv~~~eIE~~L~~~~~V~~a~vv~~~~~~- 649 (660)
++.|++.|..++ ||+|||+|++++||+|+|+||+ |+|||++|+||+|.|||++|.+||+|++|+|+...+..
T Consensus 371 ~~~t~~~f~~~g------~y~TGDl~~~~~dG~l~~~GR~~d~~ik~~G~~v~~~eIE~~l~~~p~V~~a~Vv~~~~~~~ 444 (505)
T 3nyq_A 371 PDATAAAFTEDG------FFRTGDMAVRDPDGYVRIVGRKATDLIKSGGYKIGAGEIENALLEHPEVREAAVTGEPDPDL 444 (505)
T ss_dssp HHHHHHTBCTTS------CEEEEEEEEECTTSCEEEEEESSCCCEEETTEEECHHHHHHHHTTSTTEEEEEEEEEEETTT
T ss_pred hhHhhhhhcCCC------CCccCCeEEECCCccEEEeCCccCceEEeCCEEECHHHHHHHHHHCcCccEEEEEeeECCCC
Confidence 889999997654 9999999999999999999997 69999999999999999999999999999999877655
Q ss_pred cceeeeecc
Q 006121 650 KLELIFYFS 658 (660)
Q Consensus 650 ~~~l~a~~~ 658 (660)
+..+++|+.
T Consensus 445 g~~l~a~vv 453 (505)
T 3nyq_A 445 GERIVAWIV 453 (505)
T ss_dssp EEEEEEEEE
T ss_pred CcEEEEEEE
Confidence 567888864
No 27
>3ipl_A 2-succinylbenzoate--COA ligase; structural genomics, acyl-protein synthetase, PSI-2, protein structure initiative; 2.30A {Staphylococcus aureus subsp}
Probab=100.00 E-value=3.2e-66 Score=572.09 Aligned_cols=429 Identities=16% Similarity=0.157 Sum_probs=336.0
Q ss_pred cCCCCCCcEEEEEecCCCCCCCceeecHHHHHHHHHHHHHHHHhccCCCCEEEEEcCCCHHHHHHHHHHHHcCcEEEecC
Q 006121 185 HRRKEDNTVAIVWREDRCDESAVNLMTYKELREQVMLVANALDTMFSKGDAIAIDMPMTVRAVIIYLAIILAGYVVVSIA 264 (660)
Q Consensus 185 ~a~~~pd~~Av~~~~~~~~~~~~~~lTY~eL~~~a~~lA~~L~~~v~~gd~V~i~~~~s~~~vva~lA~lkaGa~~vpl~ 264 (660)
+++++|+++|+++.++ ++||+||+++++++|++|++. +||+|+|+++|++++++++|||+++|++++|++
T Consensus 10 ~a~~~pd~~Al~~~~~--------~~Ty~eL~~~~~~lA~~L~~~--~gd~V~i~~~n~~e~~~~~lA~~~~Gav~vpl~ 79 (501)
T 3ipl_A 10 QAQQNGHHIAITDGQE--------SYTYQNLYCEASLLAKRLKAY--QQSRVGLYIDNSIQSIILIHACWLANIEIAMIN 79 (501)
T ss_dssp HHHHHTTSEEEECSSC--------EEEHHHHHHHHHHHHHHHHTT--CCSEEEEECCSSHHHHHHHHHHHHTTCEEEECC
T ss_pred HHHhcCCceEEEeCCc--------EEEHHHHHHHHHHHHHHHHHc--CCCEEEEEcCCCHHHHHHHHHHHHcCCEEEecC
Confidence 4578999999999877 999999999999999999986 999999999999999999999999999999999
Q ss_pred CCCCHHHHHHHHHhcCeeEEEeecceeecCccccchhhHhccCCCcEEEEcCCCCCCCCCCCCCCcchhhhhccCCCCCC
Q 006121 265 DSFAAREIATRLRVSKAKGIFTQDFILRGGRKFPLYSKVLGAAPLKAIVLPAIGNDVGIPLREQDLSWKDFLSSVDYHPR 344 (660)
Q Consensus 265 p~~p~~~l~~~l~~~~~~~il~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 344 (660)
|.++.+++.+++++++++++|++...............+ .........................+...... .
T Consensus 80 ~~~~~~~l~~~l~~~~~~~li~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~ 151 (501)
T 3ipl_A 80 TRLTPNEMTNQMRSIDVQLIFCTLPLELRGFQIVSLDDI----EFAGRDITTNGLLDNTMGIQYDTSNETVVPKE----S 151 (501)
T ss_dssp TTSCHHHHHHHHHHTTCCEEEESSCCCCTTSEEEETTC------------------------------------C----C
T ss_pred ccCCHHHHHHHHHhcCCCEEEEccccccccccccccccc----eeeeeecccccccccccccccccchhhccccC----C
Confidence 999999999999999999999997653222111000000 00000000000000000000000000110000 0
Q ss_pred CCCCCCccCCCCCeEEEEecCCCCCCcceEEecchhhHHHHHHhhHhcCCCCCCEEEEecCccccchhhHHHHhhhcCcE
Q 006121 345 PNYYSPVYNPVDAVVNILFSSGTTGEPKAIPWTQLSSIRCTAEGWAHIDLKVGDVYCWPTNLGWVMGPVILFSSFLNGAT 424 (660)
Q Consensus 345 ~~~~~~~~~~~~~~a~i~~TSGSTG~PKgV~~sh~~l~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~l~~G~~ 424 (660)
+.........++++|||+|||||||+||||+++|+++.+.+.+....+++++++++++.+|++|+.++..++.+++.|++
T Consensus 152 ~~~~~~~~~~~~d~a~i~~TSGTTG~PKgv~~th~~~~~~~~~~~~~~~~~~~d~~l~~~p~~~~~g~~~~~~~l~~G~~ 231 (501)
T 3ipl_A 152 PSNILNTSFNLDDIASIMFTSGTTGPQKAVPQTFRNHYASAIGCKESLGFDRDTNWLSVLPIYHISGLSVLLRAVIEGFT 231 (501)
T ss_dssp HHHHTCCCCCTTSEEEEEECCTTTSCCCEEEEEHHHHHHHHHHHHHHTCCCTTCEEEECSCTTSHHHHHHHHHHHHHTCE
T ss_pred cccccccCCCCCCeEEEEECCCCCCCCcEEEEeHHHHHHHHHHHHHhhCCCccCEEEEeCcHHHHHHHHHHHHHHHcCce
Confidence 00111234568999999999999999999999999999999888888999999999999999999999889999999999
Q ss_pred EEEecCCCChhhHHHHHHHcCCeEEeecHHHHHHHHhcCCCCCCCccCccEEEeecCCCChhhHHHHHhhCCCCceeccc
Q 006121 425 LALYQGSPLERSFGKFVQDAGVTVLGTVPSLVKAWRNTNCLEGLDWTKIRSFASTGETSNVDDDLWLSSKAWYNAIIESC 504 (660)
Q Consensus 425 lv~~~~~~~~~~l~~~i~~~~vt~l~~~P~~l~~l~~~~~~~~~~l~~lr~v~~gGe~l~~~~~~~~~~~~~~~~l~n~Y 504 (660)
+++.+ .+++..+++.|+++++|++.++|++++.|++...... .+||.+++|||++++++.+++.+. +++++|.|
T Consensus 232 ~~~~~-~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~---~~lr~i~~gG~~l~~~~~~~~~~~--~~~~~~~Y 305 (501)
T 3ipl_A 232 VRIVD-KFNAEQILTMIKNERITHISLVPQTLNWLMQQGLHEP---YNLQKILLGGAKLSATMIETALQY--NLPIYNSF 305 (501)
T ss_dssp EEECS-SCCHHHHHHHHHHSCCCEEEECHHHHHHHHHHTCCSC---TTCCEEEECSSCCCHHHHHHHHHT--TCCEEEEE
T ss_pred EEeCC-CCCHHHHHHHHHHcCCcEEEchHHHHHHHHhcCCCCc---CcccEEEEeCCCCCHHHHHHHHHh--CCCEeccc
Confidence 99987 5789999999999999999999999999998754332 389999999999999999888763 68899999
Q ss_pred cccccccccccCCcC-CCCcccccCcCCCCceEEEEcCCCCcCCCCCCceeEEEE-e----ccccCCcccccCccccccc
Q 006121 505 GGTELSSAYIQGSLL-QPQAFGAFSTATMTAGLVILDECGVPYPDDQPCVGEVGL-F----PLYLGASDRLLNADHEEVY 578 (660)
Q Consensus 505 G~TE~~~~~~~~~~~-~~~~~~~iG~p~~~~~~~vld~~~~~vp~G~~giGel~v-~----~~y~~~~~~~~~~~~t~~~ 578 (660)
|+||+++.++..... .....+++|+|+++++++|+|++ .|+. |||+| + .||++ +++.|+.
T Consensus 306 G~TE~~~~~~~~~~~~~~~~~~~~G~p~~~~~~~i~d~~-----~~~~--GEl~v~g~~~~~gY~~------~~~~t~~- 371 (501)
T 3ipl_A 306 GMTETCSQFLTATPEMLHARPDTVGMPSANVDVKIKNPN-----KEGH--GELMIKGANVMNGYLY------PTDLTGT- 371 (501)
T ss_dssp EEGGGTEEEEEECHHHHHHCTTCCBEECTTCEEEEESCC-----SSCC--EEEEEESTTSCSCCSB------STTCCCS-
T ss_pred cccccccceeecCccccccCCCCCCCCCCCcEEEEecCC-----CCCc--cEEEEeccchhhhhCc------Chhhcch-
Confidence 999998654443322 22345789999999999999976 4554 99999 3 45554 6666665
Q ss_pred ccccccCCCceeEeeCceEEEecCceEEEEeccCCccccCceeecchHHHHhhcCCCCceeeEEEEEeecC-cceeeeec
Q 006121 579 FRGMPMYKGMCLRRHGDIIKRTVGGYIIVQGRADDTMNLGGIKALLLPLTFLSSPRSSFKCLHIYAWLYFH-KLELIFYF 657 (660)
Q Consensus 579 f~~~p~~~~~r~y~TGDl~~~~~dG~l~~~GR~dd~iki~G~rv~~~eIE~~L~~~~~V~~a~vv~~~~~~-~~~l~a~~ 657 (660)
|. .+||+|||+|++++||+|+|+||.|||||++|+||+|.|||++|.+||+|++|+|+...+.. +..+++|+
T Consensus 372 ~~-------~g~~~TGDl~~~~~~G~l~~~GR~dd~ik~~G~~v~p~eiE~~l~~~p~V~~~~vv~~~~~~~g~~~~a~v 444 (501)
T 3ipl_A 372 FE-------NGYFNTGDIAEIDHEGYVMIYDRRKDLIISGGENIYPYQIETVAKQFPGISDAVCVGHPDDTWGQVPKLYF 444 (501)
T ss_dssp EE-------TTEEEEEEEEEECTTSCEEEEEECCCCEECSSCEECHHHHHHHHTTSTTEEEEEEEEEEETTTEEEEEEEE
T ss_pred hc-------CCceecCCEEEEcCCCeEEEEccccceEEECCEEECHHHHHHHHHhCCCccEEEEEEEecccCCceEEEEE
Confidence 42 23999999999999999999999999999999999999999999999999999999887665 44566665
Q ss_pred c
Q 006121 658 S 658 (660)
Q Consensus 658 ~ 658 (660)
.
T Consensus 445 ~ 445 (501)
T 3ipl_A 445 V 445 (501)
T ss_dssp E
T ss_pred E
Confidence 3
No 28
>3kxw_A Saframycin MX1 synthetase B; fatty acid AMP ligase, SGX, acyl adenylate, structural genom 2, protein structure initiative; HET: 1ZZ; 1.85A {Legionella pneumophila subsp} PDB: 3lnv_A*
Probab=100.00 E-value=1.6e-66 Score=586.52 Aligned_cols=433 Identities=14% Similarity=0.110 Sum_probs=349.2
Q ss_pred cCCCCCCcEEEEEecCCCCCCCceeecHHHHHHHHHHHHHHHHhc-cCCCCEEEEEcCCCHHHHHHHHHHHHcCcEEEec
Q 006121 185 HRRKEDNTVAIVWREDRCDESAVNLMTYKELREQVMLVANALDTM-FSKGDAIAIDMPMTVRAVIIYLAIILAGYVVVSI 263 (660)
Q Consensus 185 ~a~~~pd~~Av~~~~~~~~~~~~~~lTY~eL~~~a~~lA~~L~~~-v~~gd~V~i~~~~s~~~vva~lA~lkaGa~~vpl 263 (660)
+|+++||++|+++.+. +..+++||+||+++++++|++|++. +++||+|+|+++|++++++++|||+++|++++|+
T Consensus 20 ~a~~~p~~~a~~~~~~----~~~~~~Ty~eL~~~~~~lA~~L~~~gv~~gd~V~i~~~~~~~~~~~~lA~~~~G~~~vpl 95 (590)
T 3kxw_A 20 RALHSPNKKSCTFLNK----ELEETMTYEQLDQHAKAIAATLQAEGAKPGDRVLLLFAPGLPLIQAFLGCLYAGCIAVPI 95 (590)
T ss_dssp HHHHCTTSEEEEEEET----TEEEEEEHHHHHHHHHHHHHHHHHTTCCTTCEEEEECCSSHHHHHHHHHHHHTTCEEEEE
T ss_pred HHHhCCCCeEEEEEcC----CeeEEEcHHHHHHHHHHHHHHHHHcCCCCCCEEEEEcCCchhHHHHHHHHHHhCcEEEEe
Confidence 3478999999998642 1234999999999999999999999 9999999999999999999999999999999999
Q ss_pred CCCCC---HHHHHHHHHhcCeeEEEeecceeecCccccchhhHhccCCC--cEEEEcCCCCCCCCCCCCCCcchhhhhcc
Q 006121 264 ADSFA---AREIATRLRVSKAKGIFTQDFILRGGRKFPLYSKVLGAAPL--KAIVLPAIGNDVGIPLREQDLSWKDFLSS 338 (660)
Q Consensus 264 ~p~~p---~~~l~~~l~~~~~~~il~~~~~~~~~~~~~~~~~~~~~~~~--~~~~v~~~~~~~~~~~~~~~~~~~~~~~~ 338 (660)
+|.++ .+++.++++++++++++++.......... .....+. ....+ ..+.+...
T Consensus 96 ~~~~~~~~~~~~~~~l~~~~~~~vi~~~~~~~~~~~~-----~~~~~~~~~~~~~~----------------~~~~~~~~ 154 (590)
T 3kxw_A 96 YPPAQEKLLDKAQRIVTNSKPVIVLMIADHIKKFTAD-----ELNTNPKFLKIPAI----------------ALESIELN 154 (590)
T ss_dssp CCCCSHHHHHHHHHHHHHHCCSEEEECHHHHHHHCC----------CCEETTEEEE----------------EGGGCCGG
T ss_pred cCCCchHHHHHHHHHHHhCCCCEEEeCHHHHHHHHHh-----hhhhccccccccee----------------echhcccc
Confidence 99984 57899999999999999987532110000 0000000 00111 11111111
Q ss_pred CCCCCCCCCCCCccCCCCCeEEEEecCCCCCCcceEEecchhhHHHHHHhhHhcCCCCCCEEEEecCccccchhhH-HHH
Q 006121 339 VDYHPRPNYYSPVYNPVDAVVNILFSSGTTGEPKAIPWTQLSSIRCTAEGWAHIDLKVGDVYCWPTNLGWVMGPVI-LFS 417 (660)
Q Consensus 339 ~~~~~~~~~~~~~~~~~~~~a~i~~TSGSTG~PKgV~~sh~~l~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~-~~~ 417 (660)
.. .........++++|||+|||||||+||||+++|+++++.+.+....++++++|++++++|++|++++.. ++.
T Consensus 155 ~~-----~~~~~~~~~~~d~a~i~~TSGTTG~PKgV~~th~~l~~~~~~~~~~~~~~~~d~~l~~~p~~h~~g~~~~~~~ 229 (590)
T 3kxw_A 155 RS-----SSWQPTSIKSNDIAFLQYTSGSTMHPKGVMVSHHNLLDNLNKIFTSFHMNDETIIFSWLPPHHDMGLIGCILT 229 (590)
T ss_dssp GG-----GGCCCCCCCTTSEEEEEECSSCSSSCCEEEEEHHHHHHHHHHHHHHTTCCTTCEEEECSCTTSHHHHHTTTHH
T ss_pred cc-----ccCCCCCCCCCCeEEEEeCcCCCCCceEEEeeHHHHHHHHHHHHHhhCCCCcCeEEEecCCCcchhhHHHHHH
Confidence 00 011223457899999999999999999999999999999999888999999999999999999999876 889
Q ss_pred hhhcCcEEEEecCCC---ChhhHHHHHHHcCCeEEeecHHHHHHHHhc---CCCCCCCccCccEEEeecCCCChhhHHHH
Q 006121 418 SFLNGATLALYQGSP---LERSFGKFVQDAGVTVLGTVPSLVKAWRNT---NCLEGLDWTKIRSFASTGETSNVDDDLWL 491 (660)
Q Consensus 418 ~l~~G~~lv~~~~~~---~~~~l~~~i~~~~vt~l~~~P~~l~~l~~~---~~~~~~~l~~lr~v~~gGe~l~~~~~~~~ 491 (660)
+++.|+++++.+... ++..+++.|+++++|++.++|+++..|++. ......++++||.+++|||++++++.+++
T Consensus 230 ~l~~G~~~v~~~~~~~~~~~~~~~~~i~~~~~t~~~~~p~~~~~l~~~~~~~~~~~~~l~~lr~~~~gg~~l~~~~~~~~ 309 (590)
T 3kxw_A 230 PIYGGIQAIMMSPFSFLQNPLSWLKHITKYKATISGSPNFAYDYCVKRIREEKKEGLDLSSWVTAFNGAEPVREETMEHF 309 (590)
T ss_dssp HHHHTCEEEECCHHHHHHCTHHHHHHHHHHTCSEEEECTHHHHHHHHHCCGGGGTTCCCTTCCEEEECSSCCCHHHHHHH
T ss_pred HHhcCceEEEeCHHHHHHCHHHHHHHHHHhCCeeecCChhHHHHHHHHhhhhhccCCCchhhHHHhhCCCCCCHHHHHHH
Confidence 999999999986421 788999999999999999999999998765 22345678999999999999999999998
Q ss_pred HhhCC-----CCceeccccccccccccccCCcC--------------------------CCCcccccCcCCCCceEEEEc
Q 006121 492 SSKAW-----YNAIIESCGGTELSSAYIQGSLL--------------------------QPQAFGAFSTATMTAGLVILD 540 (660)
Q Consensus 492 ~~~~~-----~~~l~n~YG~TE~~~~~~~~~~~--------------------------~~~~~~~iG~p~~~~~~~vld 540 (660)
.+.++ +.+++|.||+||+++.++..... .....+++|+|+++ ++|+|
T Consensus 310 ~~~~~~~g~~~~~~~~~YG~TE~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~p~~~--v~i~d 387 (590)
T 3kxw_A 310 YQAFKEFGFRKEAFYPCYGLAEATLLVTGGTPGSSYKTLTLAKEQFQDHRVHFADDNSPGSYKLVSSGNPIQE--VKIID 387 (590)
T ss_dssp HHHHGGGTCCGGGEEEEEECGGGSSEEEECCTTSCCCEEEECSCCCSSSBCCBCCTTCTTCEEEECCCEESSE--EEEEC
T ss_pred HHHHHHcCCCccccccccccccccceeecccCCCCceeeeecHHHHhcCceeeccCCCCCcceEeccCCCCCC--eEEEc
Confidence 88763 35799999999999765543211 11234689999998 88999
Q ss_pred CC-CCcCCCCCCceeEEEE-----eccccCCcccccCcccccccccccccCC--CceeEeeCceEEEecCceEEEEeccC
Q 006121 541 EC-GVPYPDDQPCVGEVGL-----FPLYLGASDRLLNADHEEVYFRGMPMYK--GMCLRRHGDIIKRTVGGYIIVQGRAD 612 (660)
Q Consensus 541 ~~-~~~vp~G~~giGel~v-----~~~y~~~~~~~~~~~~t~~~f~~~p~~~--~~r~y~TGDl~~~~~dG~l~~~GR~d 612 (660)
++ ++++|.|++ |||+| +.||++ +++.|++.|..++... |.+||+|||+|+++ ||+|+|+||+|
T Consensus 388 ~~~~~~~~~g~~--GEl~v~g~~v~~GY~~------~p~~t~~~f~~~~~~~~~g~~~~~TGDlg~~d-dG~l~~~GR~d 458 (590)
T 3kxw_A 388 PDTLIPCDFDQV--GEIWVQSNSVAKGYWN------QPEETRHAFAGKIKDDERSAIYLRTGDLGFLH-ENELYVTGRIK 458 (590)
T ss_dssp TTTCCBCCTTBC--EEEEEESTTSCCCBTT------CHHHHHHHHCBCCTTC---CCBEEEEEEEEEE-TTEEEEEEESS
T ss_pred CCCCcCCCCCCE--EEEEEeCCcccccccC------ChhHHHHHHhccccCCCCCCcEEecCcEEEEE-CCEEEEEcCcc
Confidence 76 999999996 99999 345655 8889999998765543 55699999999999 99999999999
Q ss_pred CccccCceeecchHHHHhh-cCCCCce--eeEEEEEeecCcceeeeecc
Q 006121 613 DTMNLGGIKALLLPLTFLS-SPRSSFK--CLHIYAWLYFHKLELIFYFS 658 (660)
Q Consensus 613 d~iki~G~rv~~~eIE~~L-~~~~~V~--~a~vv~~~~~~~~~l~a~~~ 658 (660)
||||++|+||+|.|||++| ..+|+|. +++|+...+..+.+++++++
T Consensus 459 d~Ik~~G~~v~p~eIE~~l~~~~~~v~~~~~~v~~~~~~~~~~~~~~v~ 507 (590)
T 3kxw_A 459 DLIIIYGKNHYPQDIEFSLMHSPLHHVLGKCAAFVIQEEHEYKLTVMCE 507 (590)
T ss_dssp CHHHHHHHTTHHHHHHHHHHHSGGGGGEEEEEEEEEEETTEEEEEEEEE
T ss_pred ceEEECCEecCHHHHHHHHHhcCccccCccEEEEEecCCCCceEEEEEE
Confidence 9999999999999999999 8899998 77777777777777877764
No 29
>3ite_A SIDN siderophore synthetase; ligase, non-ribosomal peptide synthesis, NRPS, sidna3, fungal, endophyte; HET: MSE; 2.00A {Neotyphodium lolii}
Probab=100.00 E-value=4.9e-66 Score=578.60 Aligned_cols=415 Identities=19% Similarity=0.186 Sum_probs=298.4
Q ss_pred cCCCCCCcEEEEEecCC--CCCCCceeecHHHHHHHHHHHHHHHHhc-cCCCCEEEEEcCCCHHHHHHHHHHHHcCcEEE
Q 006121 185 HRRKEDNTVAIVWREDR--CDESAVNLMTYKELREQVMLVANALDTM-FSKGDAIAIDMPMTVRAVIIYLAIILAGYVVV 261 (660)
Q Consensus 185 ~a~~~pd~~Av~~~~~~--~~~~~~~~lTY~eL~~~a~~lA~~L~~~-v~~gd~V~i~~~~s~~~vva~lA~lkaGa~~v 261 (660)
+|+++||++|+++.+.. ......+++||+||+++++++|++|++. + +||+|+|+++|++++++++|||+|+|++++
T Consensus 29 ~a~~~p~~~A~~~~~~~~~~~~~~~~~~Ty~eL~~~~~~lA~~L~~~g~-~gd~V~i~~~n~~~~~~~~lA~~~~Gav~v 107 (562)
T 3ite_A 29 WAKTHPEWKAVEVATGFLGSQKIVTEDWTYKKLNETANQVANLIIHASL-HGRAIAVSLDRSLIAFAIIVGIMKSGNTYV 107 (562)
T ss_dssp HHHHCTTSEEEEEEECC-----CEEEEEEHHHHHHHHHHHHHHHHHTTC-SSCEEEEECCSCHHHHHHHHHHHHTTCEEE
T ss_pred HHHHCCCchhhhcccccccccccccCCCCHHHHHHHHHHHHHHHHhcCC-CCCEEEEEeCCCHHHHHHHHHHHHhCCEEE
Confidence 34789999999986520 0112235899999999999999999999 8 799999999999999999999999999999
Q ss_pred ecCCCCCHHHHHHHHHhcCeeEEEeecceeecCccccchhhHhccCCCcEEEEcCCCCCCCCCCCCCCcchhhhhccCCC
Q 006121 262 SIADSFAAREIATRLRVSKAKGIFTQDFILRGGRKFPLYSKVLGAAPLKAIVLPAIGNDVGIPLREQDLSWKDFLSSVDY 341 (660)
Q Consensus 262 pl~p~~p~~~l~~~l~~~~~~~il~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~ 341 (660)
||+|.++.+++.+++++++++++|+++....... ......++.. ....+.+.......
T Consensus 108 pl~~~~~~~~l~~~l~~~~~~~~i~~~~~~~~~~-----------~~~~~~~~~~-----------~~~~~~~~~~~~~~ 165 (562)
T 3ite_A 108 PIEAGLPNDRKSFLLRDSRAAMAFVCDNNFDGVE-----------LPPETKVLDT-----------KNQSFIENLSTQDT 165 (562)
T ss_dssp ECCTTSCHHHHHHHHHHHTCSEEEECTTTTTTCC-----------CCTTCEEEET-----------TCHHHHHHHHHSCC
T ss_pred ecCCcCHHHHHHHHHHhcCCCEEEEccccccccc-----------cCccceeecc-----------cchhhhhhcccccc
Confidence 9999999999999999999999999865321110 0111111110 11122222222111
Q ss_pred CCCCCCCCCccCCCCCeEEEEecCCCCCCcceEEecchhhHHHHHHhhHh--------cCCCCCCEEEEecCccccchhh
Q 006121 342 HPRPNYYSPVYNPVDAVVNILFSSGTTGEPKAIPWTQLSSIRCTAEGWAH--------IDLKVGDVYCWPTNLGWVMGPV 413 (660)
Q Consensus 342 ~~~~~~~~~~~~~~~~~a~i~~TSGSTG~PKgV~~sh~~l~~~~~~~~~~--------~~~~~~~~~l~~~~~~~~~~~~ 413 (660)
........++++|||+|||||||+||||+++|+++.+.+.+.... +.+...+++++..+++|+.++.
T Consensus 166 -----~~~~~~~~~~~~a~i~~TSGTTG~PKgV~~th~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 240 (562)
T 3ite_A 166 -----SDILNNYPENLDAYLLYTSGSTGTPKGVRVSRHNLSSFSDAWGKLIGNVAPKSLELGGVGKFLCLASRAFDVHIG 240 (562)
T ss_dssp -----SCCCCCCCTTSEEEEEEECC---CCEEEEEEHHHHHHHHHHHHHHHHHHCGGGGGCTTTCEEECCSCTTSTHHHH
T ss_pred -----cccccCCCCCCcEEEEECCCCCCCCcEEEECchhHHHHHHHHHhhhccccchhcccCcCceEEEecCchhhhhHH
Confidence 111233457889999999999999999999999998877654432 4578899999999999999999
Q ss_pred HHHHhhhcCcEEEEecCCCChhhHHHHHHHcCCeEEeecHHHHHHHHhcCCCCCCCccCccEEEeecCCCChhhHHHHHh
Q 006121 414 ILFSSFLNGATLALYQGSPLERSFGKFVQDAGVTVLGTVPSLVKAWRNTNCLEGLDWTKIRSFASTGETSNVDDDLWLSS 493 (660)
Q Consensus 414 ~~~~~l~~G~~lv~~~~~~~~~~l~~~i~~~~vt~l~~~P~~l~~l~~~~~~~~~~l~~lr~v~~gGe~l~~~~~~~~~~ 493 (660)
.++.++..|+++++.+....+..+.+.|+++++|++.++|++++.+... ..++++||.+++||+++++++.+++.+
T Consensus 241 ~~~~~l~~g~~~~~~~~~~~~~~~~~~i~~~~~t~~~~~P~~l~~~~~~----~~~~~~lr~~~~gG~~l~~~~~~~~~~ 316 (562)
T 3ite_A 241 EMFLAWRFGLCAVTGERLSMLDDLPRTFRELGVTHAGIVPSLLDQTGLV----PEDAPHLVYLGVGGEKMTPRTQQIWSS 316 (562)
T ss_dssp HHHHHHHTTCEEEECCHHHHHHSHHHHHHHTTCCEEEECHHHHHHHTCC----GGGSTTCCEEEEESSCCCHHHHHHHTT
T ss_pred HHHHHHhcccEEEecchhhCHHHHHHHHHHcCCCEEEcCHHHHhhcccC----ccccCceEEEEEecCCCCHHHHHHHhh
Confidence 9999999999999876433456789999999999999999999887543 346789999999999999999998876
Q ss_pred hCCCCceeccccccccccccccCCcCCCCcccccCcCCCCceEEEEcC-CCCcCCCCCCceeEEEE-----eccccCCcc
Q 006121 494 KAWYNAIIESCGGTELSSAYIQGSLLQPQAFGAFSTATMTAGLVILDE-CGVPYPDDQPCVGEVGL-----FPLYLGASD 567 (660)
Q Consensus 494 ~~~~~~l~n~YG~TE~~~~~~~~~~~~~~~~~~iG~p~~~~~~~vld~-~~~~vp~G~~giGel~v-----~~~y~~~~~ 567 (660)
.+ +++++|.||+||+++.++...........++|+|+++++++|+|+ .++++|+|+. |||+| ..||++
T Consensus 317 ~~-~~~~~~~YG~TE~~~~~~~~~~~~~~~~~~~G~p~~~~~~~i~d~~~~~~~~~g~~--GEl~v~g~~v~~GY~~--- 390 (562)
T 3ite_A 317 SD-RVALVNVYGPTEVTIGCSAGRILPDSDTRCIGHPLGDSVAHVLAPGSNEHVKKGMA--GELVIEGSLVANGYLN--- 390 (562)
T ss_dssp CS-SCEEEEEECCGGGCSCSEEEECCTTSCTTEEEEECTTCEEEEECTTSSCBCCTTSC--EEEEEESTTSCCEESS---
T ss_pred CC-CcEEEEeeccchheeeeeeeeecCCCCCccccccCCCCeEEEEeCCCCCCCCCCCc--eEEEEeccccchhhCC---
Confidence 54 589999999999987655444444455678999999999999995 6889999997 99999 346665
Q ss_pred cccCcccccccccccccCCCceeEeeCceEEEecCceEEEEeccCCccccCceeecchHHHHhhcCC-CCceeeEEEEE
Q 006121 568 RLLNADHEEVYFRGMPMYKGMCLRRHGDIIKRTVGGYIIVQGRADDTMNLGGIKALLLPLTFLSSPR-SSFKCLHIYAW 645 (660)
Q Consensus 568 ~~~~~~~t~~~f~~~p~~~~~r~y~TGDl~~~~~dG~l~~~GR~dd~iki~G~rv~~~eIE~~L~~~-~~V~~a~vv~~ 645 (660)
+++.|+..|. +|.+||+|||+|++|+||+|+|+||+|||||++|+||+|.|||++|.+| |.|.+++|+..
T Consensus 391 ---~p~~t~~~~~-----~g~~w~~TGDlg~~d~dG~l~~~GR~dd~Ik~~G~~v~p~eIE~~l~~~~~~~~~~~v~~~ 461 (562)
T 3ite_A 391 ---RPDAKGFCDI-----NGRKMYRTGDIVRMDADSSILFLGRKDEQVKVRGQRLELGEVSEVIRSLSPTDIDVVTLLL 461 (562)
T ss_dssp ---CTTCCSEEEE-----TTEEEEEEEEEEEECTTSCEEEEEEC-----------------------------------
T ss_pred ---CccccccccC-----CCCEEEecCCEEEEcCCCeEEEEccccCEEeECcEEECHHHHHHHHHhcCCCceeEEEEEe
Confidence 6666654433 4678999999999999999999999999999999999999999999998 66666665543
No 30
>3gqw_A Fatty acid AMP ligase; FAAL, E. coli, ATP-dependent binding enzyme family,, structural genomics, PSI-2, protein structure initiative; HET: ZZ9; 3.00A {Escherichia coli O6} PDB: 3pbk_A*
Probab=100.00 E-value=3.4e-64 Score=565.91 Aligned_cols=418 Identities=17% Similarity=0.162 Sum_probs=334.8
Q ss_pred cCCCCCCcEEEEEecCCCCCCCceeecHHHHHHHHHHHHHHHHhc-cCCCCEEEEEcCCCHHHHHHHHHHHHcCcEEEec
Q 006121 185 HRRKEDNTVAIVWREDRCDESAVNLMTYKELREQVMLVANALDTM-FSKGDAIAIDMPMTVRAVIIYLAIILAGYVVVSI 263 (660)
Q Consensus 185 ~a~~~pd~~Av~~~~~~~~~~~~~~lTY~eL~~~a~~lA~~L~~~-v~~gd~V~i~~~~s~~~vva~lA~lkaGa~~vpl 263 (660)
+++++|+.+++.... +..+++||+||+++++++|++|+++ +++||+|+|+++|++++++++|||+++|++++|+
T Consensus 30 ~a~~~p~~~~~~~~~-----~~~~~~Ty~eL~~~~~~lA~~L~~~Gv~~gd~V~i~~~~~~~~~~~~lA~~~~G~~~vpl 104 (576)
T 3gqw_A 30 AALSSAGMNFYDRRC-----QLEDQLEYQTLKARAEAGAKRLLSLNLKKGDRVALIAETSSEFVEAFFACQYAGLVAVPL 104 (576)
T ss_dssp HTTSSCEEEEECTTS-----CEEEEEEHHHHHHHHHHHHHHHHHTCCCTTCEEEEECCSSHHHHHHHHHHHHTTCEEEEE
T ss_pred HhhCCCCeEEeCCCC-----CceeEEcHHHHHHHHHHHHHHHHHcCCCCCCEEEEEcCCcHHHHHHHHHHHHhCCeEeec
Confidence 347889988875422 1224899999999999999999999 9999999999999999999999999999999999
Q ss_pred CCCCC-------HHHHHHHHHhcCeeEEEeecceeecCccccchhhHhccCCCcEEEEcCCCCCCCCCCCCCCcchhhhh
Q 006121 264 ADSFA-------AREIATRLRVSKAKGIFTQDFILRGGRKFPLYSKVLGAAPLKAIVLPAIGNDVGIPLREQDLSWKDFL 336 (660)
Q Consensus 264 ~p~~p-------~~~l~~~l~~~~~~~il~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~ 336 (660)
++.++ .+++.++++++++++||+++... +.........+....+. ..+.+..
T Consensus 105 ~~~~~~~~~~~~~~~l~~~l~~~~~~~ii~~~~~~------~~~~~~~~~~~~~~~~~---------------~~~~~~~ 163 (576)
T 3gqw_A 105 AIPMGVGQRDSWSAKLQGLLASCQPAAIITGDEWL------PLVNAATHDNPELHVLS---------------HAWFKAL 163 (576)
T ss_dssp CCCSSSSSHHHHHHHHHHHHHHHCCSEEEECGGGH------HHHHHHGGGCTTCEEEE---------------HHHHHTS
T ss_pred CCCCcccchhhHHHHHHHHHHhcCCCEEEecHHHH------HHHHHhhccCCcceecc---------------hhhhhcc
Confidence 99999 89999999999999999987532 12222222222111111 0111111
Q ss_pred ccCCCCCCCCCCCCccCCCCCeEEEEecCCCCCCcceEEecchhhHHHHHHhhHh-cCCCCCCEEEEecCccccchhhH-
Q 006121 337 SSVDYHPRPNYYSPVYNPVDAVVNILFSSGTTGEPKAIPWTQLSSIRCTAEGWAH-IDLKVGDVYCWPTNLGWVMGPVI- 414 (660)
Q Consensus 337 ~~~~~~~~~~~~~~~~~~~~~~a~i~~TSGSTG~PKgV~~sh~~l~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~~- 414 (660)
. . .........+++++||+|||||||+||||+++|+++.+.+.+.... ++++++|++++.+|++|+++++.
T Consensus 164 ~---~----~~~~~~~~~~~d~a~i~~TSGTTG~PKgV~~sh~~~~~~~~~~~~~~~~~~~~d~~l~~~p~~h~~g~~~~ 236 (576)
T 3gqw_A 164 P---E----ADVALQRPVPNDIAYLQYTSGSTRFPRGVIITHREVMANLRAISHDGIKLRPGDRCVSWLPFYHDMGLVGF 236 (576)
T ss_dssp C---C----CCCCCCCCCTTSEEEEECTTSCSSSCCCEEEEHHHHHHHHHHHHHTTSCCCTTCCEEECCCTTSHHHHHHH
T ss_pred c---c----cccccCCCCCCCeEEEEeCCCCCCCCceEEeeHHHHHHHHHHhhhcccCCCCcceEEEcCCccccccHHHH
Confidence 1 0 1112233467999999999999999999999999999888776554 78999999999999999999865
Q ss_pred HHHhhhcCcEEEEecC---CCChhhHHHHHHHcCCeEEeecHHHHHHHHhcCC---CCCCCccCccEEEeecCCCChhhH
Q 006121 415 LFSSFLNGATLALYQG---SPLERSFGKFVQDAGVTVLGTVPSLVKAWRNTNC---LEGLDWTKIRSFASTGETSNVDDD 488 (660)
Q Consensus 415 ~~~~l~~G~~lv~~~~---~~~~~~l~~~i~~~~vt~l~~~P~~l~~l~~~~~---~~~~~l~~lr~v~~gGe~l~~~~~ 488 (660)
++.++..|+++++.+. ..++..+++.|+++++|++.++|+++..+.+... ....++++||.+++|||++++++.
T Consensus 237 ~~~~l~~g~~~~~~~~~~~~~~~~~~~~~i~~~~~t~~~~~p~~~~~l~~~~~~~~~~~~~l~~lr~~~~gg~~l~~~~~ 316 (576)
T 3gqw_A 237 LLTPVATQLSVDYLRTQDFAMRPLQWLKLISKNRGTVSVAPPFGYELCQRRVNEKDLAELDLSCWRVAGIGAEPISAEQL 316 (576)
T ss_dssp THHHHHTTCCEEECCHHHHHHCTTHHHHHHHHTTCCEEEECHHHHHHHHHSCCHHHHTTCCCTTCCEEEECSSCCCHHHH
T ss_pred HHHHHhcCceEEEcchhHhhhCHHHHHHHHHHhCCeEEEcCHHHHHHHHHHhcccccccCChhhhHhhhccCccCCHHHH
Confidence 6778899999988763 2478899999999999999999999988865432 234568999999999999999999
Q ss_pred HHHHhhCC-----CCceeccccccccccccccCCcCCC---------------------------CcccccCcCCCCceE
Q 006121 489 LWLSSKAW-----YNAIIESCGGTELSSAYIQGSLLQP---------------------------QAFGAFSTATMTAGL 536 (660)
Q Consensus 489 ~~~~~~~~-----~~~l~n~YG~TE~~~~~~~~~~~~~---------------------------~~~~~iG~p~~~~~~ 536 (660)
+++.+.++ +++++|.||+||++++++....... ....++|+|++++++
T Consensus 317 ~~~~~~~~~~~~~~~~~~~~YG~TE~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~G~p~~~~~~ 396 (576)
T 3gqw_A 317 HQFAECFRQVNFDNKTFMPCYGLAENALAVSFSDEASGVVVNEVDRDILEYQGKAVAPGAETRAVSTFVNCGKALPEHGI 396 (576)
T ss_dssp HHHHHHHGGGTCCGGGEEEEEECGGGSSEEEECCTTCCCCEEEEEHHHHHHHCBCCCCCTTCCCEEEEEBCCEECTTCEE
T ss_pred HHHHHHHhhcCCCcccccccCCcccccceeecccccCCccccccchhhhcccCcccccCccccCccceeecCCcCCCCeE
Confidence 99988764 5789999999999976554322110 112389999999999
Q ss_pred EEEcCCCCcCCCCCCceeEEEE-e----ccccCCcccccCcccccccccccccCCCceeEeeCceEEEecCceEEEEecc
Q 006121 537 VILDECGVPYPDDQPCVGEVGL-F----PLYLGASDRLLNADHEEVYFRGMPMYKGMCLRRHGDIIKRTVGGYIIVQGRA 611 (660)
Q Consensus 537 ~vld~~~~~vp~G~~giGel~v-~----~~y~~~~~~~~~~~~t~~~f~~~p~~~~~r~y~TGDl~~~~~dG~l~~~GR~ 611 (660)
+|+|++|+++|.|++ |||+| + .||++ +++.+++.|. .+||+|||+|++ +||+|+|+||+
T Consensus 397 ~i~d~~g~~~~~g~~--GEl~v~g~~~~~gY~~------~~~~~~~~~~-------~g~~~TGDl~~~-~dG~l~~~GR~ 460 (576)
T 3gqw_A 397 EIRNEAGMPVAERVV--GHICISGPSLMSGYFG------DQVSQDEIAA-------TGWLDTGDLGYL-LDGYLYVTGRI 460 (576)
T ss_dssp EEECTTSCBCCTTBC--EEEEEESTTSCCCBTT------CHHHHHHHHH-------HSCEEEEEEEEE-ETTEEEEEEET
T ss_pred EEECCCCCCCCCCCe--EEEEEeCccccccccC------CccccccccC-------CCeeeccceEEE-ECCEEEEEecC
Confidence 999999999999996 99999 3 45554 5555554432 349999999999 79999999999
Q ss_pred CCccccCceeecchHHHHhhcCCCCceeeEEEEEeecCcc
Q 006121 612 DDTMNLGGIKALLLPLTFLSSPRSSFKCLHIYAWLYFHKL 651 (660)
Q Consensus 612 dd~iki~G~rv~~~eIE~~L~~~~~V~~a~vv~~~~~~~~ 651 (660)
|||||++|+||+|.|||++|.+||+|.+++|++....+..
T Consensus 461 dd~ik~~G~~v~p~eIE~~l~~~p~V~~~~vv~~~~~~~~ 500 (576)
T 3gqw_A 461 KDLIIIRGRNIWPQDIEYIAEQEPEIHSGDAIAFVTAQEK 500 (576)
T ss_dssp TTCEEETTEEECHHHHHHHHTTSSSCCTTSEEEEECTTSC
T ss_pred cceEEECCEEECHHHHHHHHHhCcccccccEEEEEcCCcc
Confidence 9999999999999999999999999999988887766544
No 31
>3t5a_A Long-chain-fatty-acid--AMP ligase FADD28; acetyl-COA synthetase like fold, AMP-binding; 2.05A {Mycobacterium tuberculosis} PDB: 3e53_A
Probab=100.00 E-value=4e-60 Score=520.77 Aligned_cols=386 Identities=16% Similarity=0.137 Sum_probs=300.0
Q ss_pred cCCCCCCcEEEEEecCC-CCCCCceeecHHHHHHHHHHHHHHHHhc-cCCCCEEEEEcCCCHHHHHHHHHHHHcCcEEEe
Q 006121 185 HRRKEDNTVAIVWREDR-CDESAVNLMTYKELREQVMLVANALDTM-FSKGDAIAIDMPMTVRAVIIYLAIILAGYVVVS 262 (660)
Q Consensus 185 ~a~~~pd~~Av~~~~~~-~~~~~~~~lTY~eL~~~a~~lA~~L~~~-v~~gd~V~i~~~~s~~~vva~lA~lkaGa~~vp 262 (660)
+++++||++|+++.+.. ...+..+++||+||+++++++|++|++. + +||+|+|+++|++++++++|||+++|+++||
T Consensus 33 ~a~~~pd~~Al~~~~~~~~~~g~~~~~Ty~el~~~~~~lA~~L~~~g~-~gd~V~i~~~n~~e~~~~~lA~~~~G~v~vp 111 (480)
T 3t5a_A 33 CARLQPHDPAFTFMDYEQDWDGVAITLTWSQLYRRTLNVAQELSRCGS-TGDRVVISAPQGLEYVVAFLGALQAGRIAVP 111 (480)
T ss_dssp HHHHSTTSEEEEEEETTTCTTCEEEEEEHHHHHHHHHHHHHHHTTSSC-TTCEEEEECCSSHHHHHHHHHHHHTTCEEEE
T ss_pred HHHhCCCCceEEEecccCCCCCceEEEcHHHHHHHHHHHHHHHHhcCC-CCCEEEEEcCCcHHHHHHHHHHHHhCcEEEe
Confidence 34789999999987621 1122345999999999999999999999 8 9999999999999999999999999999999
Q ss_pred cCC---CCCHHHHHHHHHhcCeeEEEeecceeecCccccchhhHhccCCC---cEEEEcCCCCCCCCCCCCCCcchhhhh
Q 006121 263 IAD---SFAAREIATRLRVSKAKGIFTQDFILRGGRKFPLYSKVLGAAPL---KAIVLPAIGNDVGIPLREQDLSWKDFL 336 (660)
Q Consensus 263 l~p---~~p~~~l~~~l~~~~~~~il~~~~~~~~~~~~~~~~~~~~~~~~---~~~~v~~~~~~~~~~~~~~~~~~~~~~ 336 (660)
|++ .++.+++.++++++++++||++..... .........+. ..++ .++.+.
T Consensus 112 l~~~~~~~~~~~l~~il~~~~~~~vi~~~~~~~------~~~~~~~~~~~~~~~~~~-----------------~~~~~~ 168 (480)
T 3t5a_A 112 LSVPQGGVTDERSDSVLSDSSPVAILTTSSAVD------DVVQHVARRPGESPPSII-----------------EVDLLD 168 (480)
T ss_dssp ECSCCSCTTCCHHHHHHHHHCCSEEEECTTTHH------HHHHTCC------CCEEE-----------------EGGGSC
T ss_pred eCCCCccchHHHHHHHHHhCCCCEEEeChhHHH------HHHHHHhcccccccccee-----------------Eecccc
Confidence 999 889999999999999999999975321 11111111100 0111 111110
Q ss_pred ccCCCCCCCCCCCCccCCCCCeEEEEecCCCCCCcceEEecchhhHHHHHHhhHhcCCCC------CCEEEEecCccccc
Q 006121 337 SSVDYHPRPNYYSPVYNPVDAVVNILFSSGTTGEPKAIPWTQLSSIRCTAEGWAHIDLKV------GDVYCWPTNLGWVM 410 (660)
Q Consensus 337 ~~~~~~~~~~~~~~~~~~~~~~a~i~~TSGSTG~PKgV~~sh~~l~~~~~~~~~~~~~~~------~~~~l~~~~~~~~~ 410 (660)
.. ...........++++|||+|||||||+||||+++|+++.+.+.+....+.+.+ ++++++.+|++|++
T Consensus 169 ~~-----~~~~~~~~~~~~~d~a~i~~TSGTTG~PKgV~~th~~l~~~~~~~~~~~~~~~~~~~~~~d~~l~~~pl~h~~ 243 (480)
T 3t5a_A 169 LD-----APNGYTFKEDEYPSTAYLQYTSGSTRTPAGVVMSHQNVRVNFEQLMSGYFADTDGIPPPNSALVSWLPFYHDM 243 (480)
T ss_dssp TT-----CC---CCCCSSCCSEEEEECC------CCCEEEEHHHHHHHHHHHHHHHCTTTTTCCCTTEEEEECCCTTSTT
T ss_pred cc-----cccCCCCCCCCCCceEEEEecCCCCCCCcEEEEeHHHHHHHHHHHHHHhccccccCCCCCCeEEEeCCCcCcc
Confidence 00 01112233456789999999999999999999999999999888888888877 99999999999999
Q ss_pred hh-hHHHHhhhcCcEEEEecCC---CChhhHHHHHHHcCCeEEeecHHHHHHHHhc----CCCCCCCccCccEEEeecCC
Q 006121 411 GP-VILFSSFLNGATLALYQGS---PLERSFGKFVQDAGVTVLGTVPSLVKAWRNT----NCLEGLDWTKIRSFASTGET 482 (660)
Q Consensus 411 ~~-~~~~~~l~~G~~lv~~~~~---~~~~~l~~~i~~~~vt~l~~~P~~l~~l~~~----~~~~~~~l~~lr~v~~gGe~ 482 (660)
++ +.++.+|+.|+++++.+.. .++..+++.|+++++| +..+|+++..|+.. ......++++||.+++|||+
T Consensus 244 g~~~~~~~~l~~G~~~v~~~~~~~~~~~~~~~~~i~~~~~t-~~~~p~~~~~l~~~~~~~~~~~~~~l~~lr~i~~gG~~ 322 (480)
T 3t5a_A 244 GLVIGICAPILGGYPAVLTSPVSFLQRPARWMHLMASDFHA-FSAAPNFAFELAARRTTDDDMAGRDLGNILTILSGSER 322 (480)
T ss_dssp HHHHHTHHHHHHTCCEEECCHHHHHHCTHHHHHHTTSSSEE-EEEECHHHHHHHHHHCCTGGGTTCCCTTCCEEEECCTT
T ss_pred HHHHHHHHHHHcCCceEEECHHHHHHCHHHHHHHHHhhcee-EeeChHHHHHHHHhhcCcccccccchhhhheeeecCCc
Confidence 96 5789999999999998643 3789999999999999 88899988887753 22345678999999999999
Q ss_pred CChhhHHHHHhhCC-----CCceeccccccccccccccCCcCC------------------------CCcccccCcCCCC
Q 006121 483 SNVDDDLWLSSKAW-----YNAIIESCGGTELSSAYIQGSLLQ------------------------PQAFGAFSTATMT 533 (660)
Q Consensus 483 l~~~~~~~~~~~~~-----~~~l~n~YG~TE~~~~~~~~~~~~------------------------~~~~~~iG~p~~~ 533 (660)
+++++.+++.+.++ +++++|.||+||+++.++...... .....++|+|++
T Consensus 323 l~~~~~~~~~~~~~~~~~~~~~~~~~YG~TE~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~G~p~~- 401 (480)
T 3t5a_A 323 VQAATIKRFADRFARFNLQERVIRPSYWLAEATVYVATSKPGQPPETVDFDTESLSAGHAKPCAGGGATSLISYMLPRS- 401 (480)
T ss_dssp CCHHHHHHHHHHSGGGTCCGGGEEEEEEETTTTEEEEECCTTSSCCEEEECHHHHHTTBCCCCCSSSCEEEECEECCSS-
T ss_pred CCHHHHHHHHHHHhhcCCChhhccccccccccceeEeecccCCCcceEEecHHHhccCceeecCCCCcceeeecCcccC-
Confidence 99999999998873 457999999999997655443321 123458999999
Q ss_pred ceEEEEcCC-CCcCCCCCCceeEEEE-----eccccCCcccccCccccccccccccc-----CCCceeEeeCceEEEecC
Q 006121 534 AGLVILDEC-GVPYPDDQPCVGEVGL-----FPLYLGASDRLLNADHEEVYFRGMPM-----YKGMCLRRHGDIIKRTVG 602 (660)
Q Consensus 534 ~~~~vld~~-~~~vp~G~~giGel~v-----~~~y~~~~~~~~~~~~t~~~f~~~p~-----~~~~r~y~TGDl~~~~~d 602 (660)
++++|+|++ |+++|.|++ |||+| +.||++ +++.|++.|..++. .++++||||||+|+++ |
T Consensus 402 ~~~~ivd~~~g~~~~~g~~--GEl~v~g~~v~~GY~~------~pe~t~~~f~~~~~~~~~~~~~~~w~~TGDlg~~d-d 472 (480)
T 3t5a_A 402 PIVRIVDSDTCIECPDGTV--GEIWVHGDNVANGYWQ------KPDESERTFGGKIVTPSPGTPEGPWLRTGDSGFVT-D 472 (480)
T ss_dssp SEEEEEETTTTEECCTTBC--EEEEEESTTSCCCBTT------BHHHHHHHHCBCCSSCCTTCCCCCBEEEEEEEEEE-T
T ss_pred CEEEEEcCCCCcCCCCCCE--EEEEEeCCcccccccc------CcchhHHHHhhhhccccCCCCCCCeeeccceeeEE-C
Confidence 999999976 899999997 99999 345555 78899999974432 2356799999999997 9
Q ss_pred ceEEEEec
Q 006121 603 GYIIVQGR 610 (660)
Q Consensus 603 G~l~~~GR 610 (660)
|+|+|+||
T Consensus 473 G~l~~~GR 480 (480)
T 3t5a_A 473 GKMFIIGR 480 (480)
T ss_dssp TEEEECC-
T ss_pred CEEEEeCC
Confidence 99999998
No 32
>4gs5_A Acyl-COA synthetase (AMP-forming)/AMP-acid ligase protein; structural genomics, PSI-biology; 2.02A {Dyadobacter fermentans}
Probab=100.00 E-value=1.6e-45 Score=387.47 Aligned_cols=261 Identities=16% Similarity=0.116 Sum_probs=218.6
Q ss_pred CCCeEEEEecCCCCCCcceEEecchhhHHHHHHhhHhcCCCCCCEEEEecCccccchhhHHHHhhhcCcEEEEecCCCCh
Q 006121 355 VDAVVNILFSSGTTGEPKAIPWTQLSSIRCTAEGWAHIDLKVGDVYCWPTNLGWVMGPVILFSSFLNGATLALYQGSPLE 434 (660)
Q Consensus 355 ~~~~a~i~~TSGSTG~PKgV~~sh~~l~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~l~~G~~lv~~~~~~~~ 434 (660)
.+++|||+|||||||+||||+++|+++.+.+.+....++++++|++++.+|++|++++..++.+++.|+++++.+...+
T Consensus 36 ~d~~a~Il~TSGTTG~PKgV~~th~~l~~~~~~~~~~~~~~~~d~~l~~~pl~h~~gl~~~~~~l~~g~~~~~~~~~~~- 114 (358)
T 4gs5_A 36 GGAREFVLHTSGSTGMPKPITVTRAQLAASAAMTGKALSLGPGTRALVCLNVGYIAGLMMLVRGMELDWELTVTEPTAN- 114 (358)
T ss_dssp HTCSEEEEEEECTTSSEEEEEEEHHHHHHHHHHHHHHTTCCTTCEEEECSCTTSHHHHHHHHHHHHHTCEEEEECCCSC-
T ss_pred CCCCEEEEECCcccccCcEEEEeHHHHHHHHHHHHHHhCCCCCCEEEEECChHHHHHHHHHHHHHHhCcEEEecCcccc-
Confidence 4789999999999999999999999999999999899999999999999999999999999999999999999875443
Q ss_pred hhHHHHHHHcCCeEEeecHHHHHHHHhcCCCCCCCccCccEEEeecCCCChhhHHHHHhhCCCCceeccccccccccccc
Q 006121 435 RSFGKFVQDAGVTVLGTVPSLVKAWRNTNCLEGLDWTKIRSFASTGETSNVDDDLWLSSKAWYNAIIESCGGTELSSAYI 514 (660)
Q Consensus 435 ~~l~~~i~~~~vt~l~~~P~~l~~l~~~~~~~~~~l~~lr~v~~gGe~l~~~~~~~~~~~~~~~~l~n~YG~TE~~~~~~ 514 (660)
+++.|+++++|++.++|++++.|++... ...++++||.+++|||++++++.+++.+. +++++|.||+||+++.++
T Consensus 115 --~~~~i~~~~~t~~~~~P~~l~~ll~~~~-~~~~l~~lr~v~~gG~~l~~~~~~~~~~~--~~~~~~~YG~TEt~~~~~ 189 (358)
T 4gs5_A 115 --PLAGLDHADFDFVAMVPMQLQSILENSA-TSGQVDRLGKVLLGGAPVNHALAMQISDL--AMPVYQSYGMTETVSHVA 189 (358)
T ss_dssp --TTTTCSSCCCSEEEECHHHHHHHHHCTT-TGGGGGGGCSEEECSSCCCHHHHHHHHTC--SSCEEEEEECGGGSSEEE
T ss_pred --HHHHHHHhCCeEEEcChHHHHHhhcccc-ccccCCcceEEEEcccCCCchheeccccc--CceEEeccccccccceee
Confidence 3567889999999999999999988754 34568999999999999999999988764 588999999999987544
Q ss_pred cCCcCCCCcccccCcCCCCceEEEEcCCCCcCCCCCCceeEEEEeccccCCcccccCcccccccccccccCCCceeEeeC
Q 006121 515 QGSLLQPQAFGAFSTATMTAGLVILDECGVPYPDDQPCVGEVGLFPLYLGASDRLLNADHEEVYFRGMPMYKGMCLRRHG 594 (660)
Q Consensus 515 ~~~~~~~~~~~~iG~p~~~~~~~vld~~~~~vp~G~~giGel~v~~~y~~~~~~~~~~~~t~~~f~~~p~~~~~r~y~TG 594 (660)
. ........+.+|.|.||+++.+.+ . |||++...+. ..+||+||
T Consensus 190 ~-~~~~~~~~g~~~~~~pgv~~~~~~----------~--Gel~~~g~~~-----------------------~~g~~~TG 233 (358)
T 4gs5_A 190 L-KALNGPEASELYVFLPGIQYGVDE----------R--GCLHISGAVT-----------------------NGQTVQTN 233 (358)
T ss_dssp E-EECSSTTCCSCEEECTTCEEEECT----------T--SEEEEESGGG-----------------------TTCCEEEE
T ss_pred c-ccccccccceeeccCCCeEEEecC----------c--CceEEecccc-----------------------cCcceecC
Confidence 3 233344567899999999887643 2 8998832211 12399999
Q ss_pred ceEEEecCceEEEEeccCCccccCceeecchHHHHhh---cCCCCceeeEEEEEe-ecC-cceeeeecc
Q 006121 595 DIIKRTVGGYIIVQGRADDTMNLGGIKALLLPLTFLS---SPRSSFKCLHIYAWL-YFH-KLELIFYFS 658 (660)
Q Consensus 595 Dl~~~~~dG~l~~~GR~dd~iki~G~rv~~~eIE~~L---~~~~~V~~a~vv~~~-~~~-~~~l~a~~~ 658 (660)
|+|++|+|| ++|+||+|||||++|+||+|.|||++| .+||+|.+|+|+... +.. ++.+++|++
T Consensus 234 Dlg~~d~~g-~~~~GR~dd~Ik~~G~~v~p~eIE~~l~~~~~~p~V~~a~vv~~~~d~~~ge~~~a~v~ 301 (358)
T 4gs5_A 234 DLVEIHGNA-FQWIGRADNVINSGGVKIVLDQIDQRIAAVFHHLNIGNAFFCWWEPDAKLGQKLVLVIE 301 (358)
T ss_dssp EEEEECSSE-EEEEEEGGGEEEETTEEEEHHHHHHHHHHHHHHHTCCCCEEEEEEEETTTEEEEEEEEE
T ss_pred CccccccCc-eEEcccccCeEEECCEEECHHHHHHHHHHhccCCCccEEEEEEecCCccCCEEEEEEEE
Confidence 999999998 778899999999999999999999877 468999999887543 333 456677664
No 33
>3qov_A Phenylacetate-coenzyme A ligase; acetyl-COA synthetase-like, structural genomics, joint cente structural genomics, JCSG; HET: MSE ADP COA; 2.20A {Bacteroides thetaiotaomicron} PDB: 3s89_A*
Probab=100.00 E-value=4.5e-44 Score=387.80 Aligned_cols=280 Identities=19% Similarity=0.182 Sum_probs=229.2
Q ss_pred cCCC-CCeEEEEecCCCCCCcceEEecchhhHHHHHHh---hHhcCCCCCCEEEEecCccccchh-hHHHHhhhcCcEEE
Q 006121 352 YNPV-DAVVNILFSSGTTGEPKAIPWTQLSSIRCTAEG---WAHIDLKVGDVYCWPTNLGWVMGP-VILFSSFLNGATLA 426 (660)
Q Consensus 352 ~~~~-~~~a~i~~TSGSTG~PKgV~~sh~~l~~~~~~~---~~~~~~~~~~~~l~~~~~~~~~~~-~~~~~~l~~G~~lv 426 (660)
..++ ++++||+|||||||+||||+++|+++.+...+. ...++++++|++++..|++|..+. ..++.++..|++++
T Consensus 81 ~~~~~~~~a~i~~TSGTTG~PK~v~~th~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~l~~G~~~~ 160 (436)
T 3qov_A 81 AGDMKRDGVRIHSSSGTTGNPTVIVHSQHDLDSWANLVARCLYMVGIRKTDVFQNSSGYGMFTGGLGFQYGAERLGCLTV 160 (436)
T ss_dssp CSCHHHHEEEEEECSCSSSCCCEEEEEHHHHHHHHHHHHHHHHHTTCCTTSEEEECSCCTTCHHHHHHHHHHHHHTCEEE
T ss_pred cCCCcCCeEEEEECCCcCCCCeEEEECHHHHHHHHHHHHHHHHHcCCCCCCEEEECcccccchhHHHHHHHHHHcCCEEE
Confidence 3455 899999999999999999999999997766554 334589999999999998765544 56788999999999
Q ss_pred EecCCCChhhHHHHHHHcCCeEEeecHHHHHHHHhcCCCCCC--CccCccEEEeecCCCChhhHHHHHhhCCCCceeccc
Q 006121 427 LYQGSPLERSFGKFVQDAGVTVLGTVPSLVKAWRNTNCLEGL--DWTKIRSFASTGETSNVDDDLWLSSKAWYNAIIESC 504 (660)
Q Consensus 427 ~~~~~~~~~~l~~~i~~~~vt~l~~~P~~l~~l~~~~~~~~~--~l~~lr~v~~gGe~l~~~~~~~~~~~~~~~~l~n~Y 504 (660)
+.+ ..++..+++.|+++++|++.++|+++..|++....... .+++||.+++|||++++++.+++.+.+ +++++|.|
T Consensus 161 ~~~-~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~~~~~~lr~i~~gGe~l~~~~~~~~~~~~-g~~v~~~Y 238 (436)
T 3qov_A 161 PAA-AGNSKRQIKFISDFKTTALHAIPSYAIRLAEVFQEEGIDPRETTLKTLVIGAEPHTDEQRRKIERML-NVKAYNSF 238 (436)
T ss_dssp CCC-SCCHHHHHHHHHHHTCCEEECCHHHHHHHHHHHHHTTCCTTSSSCCEEEEESSCCCHHHHHHHHHHH-TSEEEEEE
T ss_pred eCC-CCCHHHHHHHHHHHCCCEEEECHHHHHHHHHHHHHcCCCcccCCccEEEEeCCcCCHHHHHHHHHHh-CccEEecC
Confidence 876 45889999999999999999999999999876332222 378999999999999999999998877 58999999
Q ss_pred cccccccccccCCcCCCCcccccCcCCCCceEEEEc-CCCCcCCCCCCceeEEEEeccccCCcccccCcccccccccccc
Q 006121 505 GGTELSSAYIQGSLLQPQAFGAFSTATMTAGLVILD-ECGVPYPDDQPCVGEVGLFPLYLGASDRLLNADHEEVYFRGMP 583 (660)
Q Consensus 505 G~TE~~~~~~~~~~~~~~~~~~iG~p~~~~~~~vld-~~~~~vp~G~~giGel~v~~~y~~~~~~~~~~~~t~~~f~~~p 583 (660)
|+||+++.++.... .....+|.|.+++.++|+| ++|+++|.|+. |||+|... +.+.| |
T Consensus 239 G~TE~~~~~~~~~~---~~~~g~~~~~~~~~v~i~d~~~g~~~~~g~~--Gel~v~~~-------------~~~~~---~ 297 (436)
T 3qov_A 239 GMTEMNGPGVAFEC---QEQNGMHFWEDCYLVEIIDPETGEPVPEGEI--GELVLTTL-------------DREMM---P 297 (436)
T ss_dssp EEGGGTEEEEEEEC---TTCSSEEECTTTEEEEEECTTTCSBCSTTCC--EEEEEEES-------------SCCSS---C
T ss_pred cchhhcCCeeEEec---CCCCeeEEccCceEEEEEECCCCCCCCCCCc--eEEEEecc-------------CcCCc---e
Confidence 99999653222211 1112367788899999999 78999999997 99999431 11123 1
Q ss_pred cCCCceeEeeCceEEEecCc------e---EEEEeccCCccccCceeecchHHHHhhcCCCCceeeEEEEEeecC-ccee
Q 006121 584 MYKGMCLRRHGDIIKRTVGG------Y---IIVQGRADDTMNLGGIKALLLPLTFLSSPRSSFKCLHIYAWLYFH-KLEL 653 (660)
Q Consensus 584 ~~~~~r~y~TGDl~~~~~dG------~---l~~~GR~dd~iki~G~rv~~~eIE~~L~~~~~V~~a~vv~~~~~~-~~~l 653 (660)
..||+|||+|++++|| + ++|+||.||+||++|+||+|.|||++|.+||+|.+++|+...+.. +..+
T Consensus 298 ----~~~y~TGDl~~~~~~gc~cG~~~~~il~i~GR~dd~ik~~G~~v~p~eiE~~l~~~p~v~~~~vv~~~~~~~~~~l 373 (436)
T 3qov_A 298 ----LIRYRTRDLTRILPGKCPCGRTHLRIDRIKGRSDDMFIIKGVNIFPMQVEKILVQFPELGSNYLITLETVNNQDEM 373 (436)
T ss_dssp ----CCSEEEEEEECEECSCCTTCCCSCEECCCCCBSSSCEEETTEEECHHHHHHHHTTCTTEEEEEEEEEEEETTEEEE
T ss_pred ----EEEEEcCCEEEEcCCCCCCCCCccccCcccCccCCEEEECCEEECHHHHHHHHHhCcCcCCcEEEEEEcCCCCcEE
Confidence 2399999999999998 5 699999999999999999999999999999999998888776544 5678
Q ss_pred eeecc
Q 006121 654 IFYFS 658 (660)
Q Consensus 654 ~a~~~ 658 (660)
++|++
T Consensus 374 ~a~v~ 378 (436)
T 3qov_A 374 IVEVE 378 (436)
T ss_dssp EEEEE
T ss_pred EEEEE
Confidence 88875
No 34
>2y4o_A Phenylacetate-coenzyme A ligase; phenylacetic acid degradation pathway; HET: DLL; 1.90A {Burkholderia cenocepacia}
Probab=100.00 E-value=7e-43 Score=379.25 Aligned_cols=280 Identities=15% Similarity=0.094 Sum_probs=226.2
Q ss_pred cCCCCCeEEEEecCCCCCCcceEEecchhhHHHHHHhh---HhcCCCCCCEEEEecCcc-ccchhhHHHHhhhcCcEEEE
Q 006121 352 YNPVDAVVNILFSSGTTGEPKAIPWTQLSSIRCTAEGW---AHIDLKVGDVYCWPTNLG-WVMGPVILFSSFLNGATLAL 427 (660)
Q Consensus 352 ~~~~~~~a~i~~TSGSTG~PKgV~~sh~~l~~~~~~~~---~~~~~~~~~~~l~~~~~~-~~~~~~~~~~~l~~G~~lv~ 427 (660)
...+++++||+|||||||+||||+++|+++.+...+.. ..++++++|++++..|++ |..++..++.++..|+++++
T Consensus 88 ~~~~~~~~~i~~TSGTTG~PK~v~~t~~~~~~~~~~~~~~~~~~~~~~~d~~l~~~~~~~~~~~~~~~~~~~~~G~~~~~ 167 (443)
T 2y4o_A 88 AVPREQVVRVHASSGTTGKPTVVGYTARDIDTWANVTARSIRAAGGRPGDTLHNAFGYGLFTGGLGIHYGAERLGCMVVP 167 (443)
T ss_dssp SSCGGGCCEEEEECCSSSSCEEEEECHHHHHHHHHHHHHHHHHTTCCTTCEEEECSCCSSSHHHHHHHHHHHHHTCEEEC
T ss_pred CCChhheEEEEECCCCCCCceEEecCHHHHHHHHHHHHHHHHHcCCCCCCEEEEeccCcccccHHHHHHHHHHcCCEEEE
Confidence 34678999999999999999999999999877654433 357889999999999985 56666678899999999988
Q ss_pred ecCCCChhhHHHHHHHcCCeEEeecHHHHHHHHhcCCCCCC--CccCccEEEeecCCCChhhHHHHHhhCCCCceecccc
Q 006121 428 YQGSPLERSFGKFVQDAGVTVLGTVPSLVKAWRNTNCLEGL--DWTKIRSFASTGETSNVDDDLWLSSKAWYNAIIESCG 505 (660)
Q Consensus 428 ~~~~~~~~~l~~~i~~~~vt~l~~~P~~l~~l~~~~~~~~~--~l~~lr~v~~gGe~l~~~~~~~~~~~~~~~~l~n~YG 505 (660)
.+ ..++..+++.|+++++|++.++|+++..|++....... .+++||.+++|||++++++.+++.+.+ +++++|.||
T Consensus 168 ~~-~~~~~~~~~~i~~~~~t~l~~~Ps~~~~l~~~~~~~~~~~~~~~lr~i~~gGe~l~~~~~~~~~~~~-g~~v~~~YG 245 (443)
T 2y4o_A 168 MS-GGQTEKQVQLIRDFEPKIILVTPSYMLNLIDEMVRQGMDPAESSLKIGIFGAEPWTQALRNEVETRV-GIDALDIYG 245 (443)
T ss_dssp CC-SCCHHHHHHHHHHHCCSEEEECHHHHHHHHHHHHHTTCCGGGSSCCEEEEESSCCCHHHHHHHHHHH-TCEEEEEEE
T ss_pred CC-CCCHHHHHHHHHHhCCcEEEECHHHHHHHHHHHHHcCCCcccCCceEEEECCCcCCHHHHHHHHHHh-CcCEEeccC
Confidence 76 35889999999999999999999999999865322222 247999999999999999999998877 589999999
Q ss_pred ccccccc-cccCCcCCCCcccccCcCCCCceEEEEc-CCCCcCCCCCCceeEEEEeccccCCcccccCcccccccccccc
Q 006121 506 GTELSSA-YIQGSLLQPQAFGAFSTATMTAGLVILD-ECGVPYPDDQPCVGEVGLFPLYLGASDRLLNADHEEVYFRGMP 583 (660)
Q Consensus 506 ~TE~~~~-~~~~~~~~~~~~~~iG~p~~~~~~~vld-~~~~~vp~G~~giGel~v~~~y~~~~~~~~~~~~t~~~f~~~p 583 (660)
+||+++. +....... ....+.|.+++.++|+| ++|+++|.|+. |||+|... |++.| |
T Consensus 246 ~TE~~g~~~~~~~~~~---~~g~~~~~~~~~~~i~d~~~g~~~~~G~~--Gel~v~~~-------------t~~~~---p 304 (443)
T 2y4o_A 246 LSEVMGPGVACECVET---KDGPVIWEDHFYPEIIDPVTGEVLPDGSQ--GELVFTSL-------------TKEAM---P 304 (443)
T ss_dssp ETTTTEEEEEEECTTT---CCSEEECTTTEEEEEECTTTCCBCCTTCC--EEEEEEES-------------SCSSS---C
T ss_pred chhhcCCeEEeccCCC---CCceEEccCCeEEEEEcCCCCCCCCCCCc--eEEEEeCC-------------CcccC---h
Confidence 9998542 22211111 11145577899999999 46999999996 99999531 12233 1
Q ss_pred cCCCceeEeeCceEEEecC-ceE-----EEEeccCCccccCceeecchHHHHhhcCCCCceeeEEEEEeec-Ccceeeee
Q 006121 584 MYKGMCLRRHGDIIKRTVG-GYI-----IVQGRADDTMNLGGIKALLLPLTFLSSPRSSFKCLHIYAWLYF-HKLELIFY 656 (660)
Q Consensus 584 ~~~~~r~y~TGDl~~~~~d-G~l-----~~~GR~dd~iki~G~rv~~~eIE~~L~~~~~V~~a~vv~~~~~-~~~~l~a~ 656 (660)
..||+|||+|++++| |++ +|+||.||+||++|+||+|.|||++|.+||+|++++|+...+. .+.+++++
T Consensus 305 ----~~~y~TGDl~~~~~~cG~~~~~l~~i~GR~~d~i~~~G~~v~p~eiE~~l~~~p~V~~~~vv~~~~~~~~~~~~a~ 380 (443)
T 2y4o_A 305 ----VIRYRTRDLTALLPPTARAMRRLAKITGRSDDMLIVRGVNVFPSQIEEIVVALPLLSGQFQITLSRDGHMDRLDLA 380 (443)
T ss_dssp ----CSSEEEEEEECEECCSSSSSCEECCCCEESSCCEEETTEEECHHHHHHHHHTSTTEEEEEEEEEEEETTEEEEEEE
T ss_pred ----hheeecCCEEEEcCCCCCCccccCccccccCCeEEECCEEECHHHHHHHHHhCcCcCccEEEEEecCCCCceEEEE
Confidence 139999999999999 997 8999999999999999999999999999999998887765544 45677777
Q ss_pred cc
Q 006121 657 FS 658 (660)
Q Consensus 657 ~~ 658 (660)
++
T Consensus 381 v~ 382 (443)
T 2y4o_A 381 VE 382 (443)
T ss_dssp EE
T ss_pred EE
Confidence 64
No 35
>2y27_A Phenylacetate-coenzyme A ligase; phenylacetic acid degradation pathway; HET: MSE PG4 ATP; 1.60A {Burkholderia cenocepacia} PDB: 2y4n_A*
Probab=100.00 E-value=1.2e-42 Score=376.61 Aligned_cols=280 Identities=16% Similarity=0.101 Sum_probs=226.0
Q ss_pred cCCCCCeEEEEecCCCCCCcceEEecchhhHHHHHHhh---HhcCCCCCCEEEEecCc-cccchhhHHHHhhhcCcEEEE
Q 006121 352 YNPVDAVVNILFSSGTTGEPKAIPWTQLSSIRCTAEGW---AHIDLKVGDVYCWPTNL-GWVMGPVILFSSFLNGATLAL 427 (660)
Q Consensus 352 ~~~~~~~a~i~~TSGSTG~PKgV~~sh~~l~~~~~~~~---~~~~~~~~~~~l~~~~~-~~~~~~~~~~~~l~~G~~lv~ 427 (660)
...++++++|+|||||||+||||+++|+++.+...+.. ..++++++|++++..|+ .|..++..++.++..|+++++
T Consensus 86 ~~~~~~~~~i~~TSGTTG~PK~v~~t~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~G~~~~~ 165 (437)
T 2y27_A 86 AVPQDRISRIHASSGTTGKPTVVGYTAADIDTWANLVARSIRAAGARRGDKVHVSYGYGLFTGGLGAHYGAERAGLTVIP 165 (437)
T ss_dssp SSCGGGCCEEEECCCTTSSCCEEEECHHHHHHHHHHHHHHHHHTTCCTTCEEEECSCCSSSHHHHHHHHHHHHTTCEEEC
T ss_pred cCChhHeEEEEECCCCCCCceEEecCHHHHHHHHHHHHHHHHHcCCCCCCEEEEcccccccccchHHHHHHHHcCCEEEe
Confidence 34678999999999999999999999999877654333 35788999999999998 466666678899999999998
Q ss_pred ecCCCChhhHHHHHHHcCCeEEeecHHHHHHHHhcCCCCCCC--ccCccEEEeecCCCChhhHHHHHhhCCCCceecccc
Q 006121 428 YQGSPLERSFGKFVQDAGVTVLGTVPSLVKAWRNTNCLEGLD--WTKIRSFASTGETSNVDDDLWLSSKAWYNAIIESCG 505 (660)
Q Consensus 428 ~~~~~~~~~l~~~i~~~~vt~l~~~P~~l~~l~~~~~~~~~~--l~~lr~v~~gGe~l~~~~~~~~~~~~~~~~l~n~YG 505 (660)
.+ ..++..+++.|+++++|++.++|+++..|++.......+ +++||.+++|||++++++.+++.+.+ +++++|.||
T Consensus 166 ~~-~~~~~~~~~~i~~~~~t~l~~~Ps~~~~l~~~~~~~~~~~~~~~lr~i~~gGe~l~~~~~~~~~~~~-g~~v~~~YG 243 (437)
T 2y27_A 166 FG-GGQTEKQVQLIQDFRPDIIMVTPSYMLSIADEIERQGLDPVQSSLRIGIFGAEPWTNDMRVAIEQRM-GIDAVDIYG 243 (437)
T ss_dssp CC-SCCHHHHHHHHHHHCCSEEEECHHHHHHHHHHHHHTTCCGGGSSCCEEEEESSCCCHHHHHHHHHHH-TSEEEEEEE
T ss_pred CC-CCCHHHHHHHHHHhCCCEEEECHHHHHHHHHHHHHcCCCcccCCeeEEEEcCccCCHHHHHHHHHHH-CcCEEecCC
Confidence 76 358899999999999999999999999998753222222 47999999999999999999998776 589999999
Q ss_pred ccccccc-cccCCcCCCCcccccCcCCCCceEEEEcC-CCCcCCCCCCceeEEEEeccccCCcccccCcccccccccccc
Q 006121 506 GTELSSA-YIQGSLLQPQAFGAFSTATMTAGLVILDE-CGVPYPDDQPCVGEVGLFPLYLGASDRLLNADHEEVYFRGMP 583 (660)
Q Consensus 506 ~TE~~~~-~~~~~~~~~~~~~~iG~p~~~~~~~vld~-~~~~vp~G~~giGel~v~~~y~~~~~~~~~~~~t~~~f~~~p 583 (660)
+||+++. +....... ....+.|.+++.++|+|+ +|+++|.|+. |||+|.. .|++.| |
T Consensus 244 ~TE~~g~~~~~~~~~~---~~g~~~~~~~~~~~i~d~~~g~~~~~g~~--Gel~v~~-------------~t~~~~---~ 302 (437)
T 2y27_A 244 LSEVMGPGVASECVET---KDGPTIWEDHFYPEIIDPETGEVLPDGEL--GELVFTS-------------LTKEAL---P 302 (437)
T ss_dssp ETTTTEEEEEECCTTT---CSSCEECTTTEEEEEECTTTCCBCCTTCC--EEEEEEE-------------SSCSSS---C
T ss_pred chhhcCCeeEEecCCC---CCceeEccCceEEEEEcCCCCCCCCCCCc--cEEEEec-------------CCcCCc---h
Confidence 9998532 22222111 112556778999999994 6999999997 9999943 112233 1
Q ss_pred cCCCceeEeeCceEEEec-CceE-----EEEeccCCccccCceeecchHHHHhhcCCCCceeeEEEEEeec-Ccceeeee
Q 006121 584 MYKGMCLRRHGDIIKRTV-GGYI-----IVQGRADDTMNLGGIKALLLPLTFLSSPRSSFKCLHIYAWLYF-HKLELIFY 656 (660)
Q Consensus 584 ~~~~~r~y~TGDl~~~~~-dG~l-----~~~GR~dd~iki~G~rv~~~eIE~~L~~~~~V~~a~vv~~~~~-~~~~l~a~ 656 (660)
..||+|||+|++++ ||++ +|+||.||+||++|++|+|.|||++|.+||+|++++|+...+. .+..++++
T Consensus 303 ----~~~y~TGDl~~~~~~~G~~~~~i~~i~GR~~d~i~~~G~~v~p~eiE~~l~~~p~V~~~~vv~~~~~~~~~~l~a~ 378 (437)
T 2y27_A 303 ----IIRYRTRDLTRLLPGTARTMRRMEKITGRSDDMMIVRGVNVFPTQIEEQLLKQRALAPHYQIVLTKEGPLDVLTLN 378 (437)
T ss_dssp ----CCSEEEEEEECEECCSSSSSCEECCCCEEGGGCEEETTEEECHHHHHHHHTTCTTBCSCCEEEEEEETTEEEEEEE
T ss_pred ----hheeecCCEEEEeCCCCCCccccCccccccCCeEEECCeEECHHHHHHHHHhCcCcCccEEEEEeecCCCceEEEE
Confidence 13999999999999 6996 9999999999999999999999999999999988877765543 45678887
Q ss_pred cc
Q 006121 657 FS 658 (660)
Q Consensus 657 ~~ 658 (660)
++
T Consensus 379 v~ 380 (437)
T 2y27_A 379 VE 380 (437)
T ss_dssp EC
T ss_pred EE
Confidence 65
No 36
>3hgu_A EHPF; phenazine, antibiotic, biosynthetic protein; 1.95A {Pantoea agglomerans} PDB: 3hgv_A 3l2k_A*
Probab=100.00 E-value=8.6e-34 Score=300.08 Aligned_cols=236 Identities=14% Similarity=0.044 Sum_probs=180.7
Q ss_pred CCCCCeEEEEecCCCCCCcceEEecchhhHHHHHHh---hHhcCCCCCCEEEEecCc-cccchhhHHHHhhhcCcEEEEe
Q 006121 353 NPVDAVVNILFSSGTTGEPKAIPWTQLSSIRCTAEG---WAHIDLKVGDVYCWPTNL-GWVMGPVILFSSFLNGATLALY 428 (660)
Q Consensus 353 ~~~~~~a~i~~TSGSTG~PKgV~~sh~~l~~~~~~~---~~~~~~~~~~~~l~~~~~-~~~~~~~~~~~~l~~G~~lv~~ 428 (660)
.+++++++|+|||||||+||||+++|+++.+...+. ...++++++|++++..|+ .|+.++...+.++..|+ +++.
T Consensus 88 ~~~~~~a~i~~TSGTTG~PKgv~~t~~~~~~~~~~~~~~~~~~~~~~~d~~l~~~p~g~~~~g~~~~~~~~~~G~-~v~~ 166 (369)
T 3hgu_A 88 LPADSHPQVYESGGTTGAPKYVVAYDAWIEALISWRMSGYQHRPGRPSGNTLAAIPTGPHIVGAINKERALRLGG-MFFS 166 (369)
T ss_dssp SCTTCCCEEEEECC---CCEEEEECHHHHHHHHHHHTTTTTTSTTCCCCEEEECSCCTTCHHHHHHHHHHHHTTS-CEEC
T ss_pred CCccccEEEEECCCCCCCCCEEEECHHHHHHHHHHHHhhHHhhCCCCcceEEEecCCCchhhhHHHHHHHHHcCC-EEEC
Confidence 467899999999999999999999999999887754 355678899999999999 88888888888899999 5554
Q ss_pred cCCCChh-----------------------hHHHHHHHcCCeEEeecHHHHHHHHhcCCCCCCCccCccEEEeecCCCCh
Q 006121 429 QGSPLER-----------------------SFGKFVQDAGVTVLGTVPSLVKAWRNTNCLEGLDWTKIRSFASTGETSNV 485 (660)
Q Consensus 429 ~~~~~~~-----------------------~l~~~i~~~~vt~l~~~P~~l~~l~~~~~~~~~~l~~lr~v~~gGe~l~~ 485 (660)
. .+++. .+++.|+++++|++.++|+++..|++.......++++||.+++|||++++
T Consensus 167 ~-~~dp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~t~l~~~Ps~~~~l~~~~~~~~~~~~~lr~i~~gGe~l~~ 245 (369)
T 3hgu_A 167 I-DIDPRWVKRSLSEGDTATVRKYTHHLVDQVQNTLMNQDIRFLVTTPPVLRELLKRPEVVLQMKQSLAQITLGGTELNL 245 (369)
T ss_dssp C-CCCHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHSCEEEEEECHHHHHHHTTCHHHHHHHHHHCSEEEEESSCCCH
T ss_pred c-cCChHHHHHhhcccchhhhHHHHHHHHHHHHHHHHhCCCCEEEeCHHHHHHHHhhhhhhccccCCeeEEEECCccCCH
Confidence 3 45665 77789999999999999999999987633223456899999999999999
Q ss_pred hhHHHHH-hhCCCCceeccccccccccccccCCcCCCCccc-ccCcC------CCCceEEEEcC-CCCcCCCCCCceeEE
Q 006121 486 DDDLWLS-SKAWYNAIIESCGGTELSSAYIQGSLLQPQAFG-AFSTA------TMTAGLVILDE-CGVPYPDDQPCVGEV 556 (660)
Q Consensus 486 ~~~~~~~-~~~~~~~l~n~YG~TE~~~~~~~~~~~~~~~~~-~iG~p------~~~~~~~vld~-~~~~vp~G~~giGel 556 (660)
++.+++. +.+++++++|.||+||+++++... .. ++|+| +++++++|+|+ +|+++|.|++ |||
T Consensus 246 ~~~~~~~~~~~p~~~v~~~YG~TE~~~~~~~~-------~~~~~G~~~~~~~~~~~~~v~ivD~~~g~~vp~G~~--GEl 316 (369)
T 3hgu_A 246 DEIKFIASEILPDCEFSASYGSTSALGVSRSL-------LITSESQQVIYDSFSPFITYDVVDSITAQTVEYGER--GNV 316 (369)
T ss_dssp HHHHHHHHHTCTTSEEEEEEEEGGGTEEEEEC-------CBCTTCSSCEEECCTTTEEEEEECTTTCSBCCTTCE--EEE
T ss_pred HHHHHHHHHhCCCcEEEcccCchhhhcceecc-------ccccCCCcccccCCCCCeEEEEECCCCCcCCCCCCc--eEE
Confidence 9999999 888789999999999998654221 12 58999 99999999997 9999999996 999
Q ss_pred EEeccccCCcccccCcccccccccccccCCCceeEeeCceEEEecC---------ceEEEEeccCCccccCce
Q 006121 557 GLFPLYLGASDRLLNADHEEVYFRGMPMYKGMCLRRHGDIIKRTVG---------GYIIVQGRADDTMNLGGI 620 (660)
Q Consensus 557 ~v~~~y~~~~~~~~~~~~t~~~f~~~p~~~~~r~y~TGDl~~~~~d---------G~l~~~GR~dd~iki~G~ 620 (660)
+|..-. ...|.. .|+|||++++.+. ..+..++|.|+++||+|.
T Consensus 317 ~vt~l~-------------~~~~l~--------ry~tgD~~~~~~~~~g~~~d~~~~v~~~~~~~~~~~i~gv 368 (369)
T 3hgu_A 317 IVTHLS-------------PWAFYP--------RVAERDTAIRLPGVSGFAGDRLADIEPLKISEGRKVIEGV 368 (369)
T ss_dssp EEEEEE-------------TTEEEE--------EEEEEEEEEEECCSTTCSSCEEEEEEECC-----------
T ss_pred EEEEcC-------------cccccc--------cccCCceEEEecCCCCCcCcccccceeccccCCCceeeec
Confidence 994321 112311 5999999988543 257789999999999985
No 37
>4eql_A 4-substituted benzoates-glutamate ligase GH3.12; firefly luciferase family, acyl adenylase, amino acid conjug ligase; HET: AMP SAL; 1.80A {Arabidopsis thaliana} PDB: 4epm_A* 4eq4_A* 4ewv_A*
Probab=98.77 E-value=1.7e-08 Score=109.66 Aligned_cols=134 Identities=13% Similarity=0.009 Sum_probs=81.5
Q ss_pred ccC---ccEEEeecCCCChhhHHHHHhhCCCCcee-ccccccccccccccCCcCCCCcccccCc-CCCCceE-EEEc--C
Q 006121 470 WTK---IRSFASTGETSNVDDDLWLSSKAWYNAII-ESCGGTELSSAYIQGSLLQPQAFGAFST-ATMTAGL-VILD--E 541 (660)
Q Consensus 470 l~~---lr~v~~gGe~l~~~~~~~~~~~~~~~~l~-n~YG~TE~~~~~~~~~~~~~~~~~~iG~-p~~~~~~-~vld--~ 541 (660)
+|+ +..++.||- ..-...++...++.+++ ..|+.||+... +...+..+ +...|- .+++.-. ..++ +
T Consensus 296 WPnl~~l~~~~~G~~---~~Y~~~l~~~~g~~p~~~~~Y~ASEg~~g-i~~~p~~~--~~~~~~~L~~~~~ffEFip~~~ 369 (581)
T 4eql_A 296 WPNTKYIETVVTGSM---GQYVPMLNYYCNDLPLVSTTYGSSETTFG-INLDPLCK--PEDVSYTFMPNMSYFEFIPMDG 369 (581)
T ss_dssp STTCCEEEEECSGGG---GGGHHHHHHHHTTCCEECCEEECSSCEEE-ECSCTTSC--GGGCCEEECTTSSEEEEEECST
T ss_pred CCCCcEEEEEcCCCh---HHHHHHHHHHcCCCccccCccccccceee-eccCCCCC--cccCceeecCCcEEEEEEeccc
Confidence 456 555566662 22234455555567776 99999996432 21111111 111122 2333311 2332 2
Q ss_pred C--C-----CcCCCCCCceeEEEEeccccCCcccccCcccccccccccccCCCceeEeeCceEEEec----CceEEEEec
Q 006121 542 C--G-----VPYPDDQPCVGEVGLFPLYLGASDRLLNADHEEVYFRGMPMYKGMCLRRHGDIIKRTV----GGYIIVQGR 610 (660)
Q Consensus 542 ~--~-----~~vp~G~~giGel~v~~~y~~~~~~~~~~~~t~~~f~~~p~~~~~r~y~TGDl~~~~~----dG~l~~~GR 610 (660)
. . ..|..|+. +||+|+.. ++ .+ =|++||+++... ..+|.|+||
T Consensus 370 ~~~~~~v~l~eVe~G~~--YelViTt~--~G------------L~----------RYr~GD~v~v~~f~~~~p~i~f~gR 423 (581)
T 4eql_A 370 GDKNDVVDLEDVKLGCT--YEPVVTNF--AG------------LY----------RMRVGDIVLVTGFYNNAPQFKFVRR 423 (581)
T ss_dssp TCCSSCEEGGGCCTTCE--EEEEEECS--SS------------CC----------SEECCEEEEEEEEETTEEEEEEEEE
T ss_pred cCCCcEeCHHHcCCCce--EEEEEeec--cc------------ee----------eEEcCCEEEEcccCCCCcEEEEEEe
Confidence 1 1 23457775 99988321 00 11 199999999986 468999999
Q ss_pred cCCccccCceeecchHHHHhhcCCC
Q 006121 611 ADDTMNLGGIKALLLPLTFLSSPRS 635 (660)
Q Consensus 611 ~dd~iki~G~rv~~~eIE~~L~~~~ 635 (660)
.|++++++|.+|...+||++|.+..
T Consensus 424 ~~~~l~~~Gekl~~~~v~~al~~a~ 448 (581)
T 4eql_A 424 ENVVLSIDSDKTNEEDLFKAVSQAK 448 (581)
T ss_dssp TTEEECSSSCCEEHHHHHHHHHHC-
T ss_pred cCCEEEeeeeECCHHHHHHHHHHHH
Confidence 9999999999999999999998543
No 38
>4b2g_A GH3-1 auxin conjugating enzyme; signaling protein, ignaling protein, adenylate, amino acid conjugation, plant growth; HET: V1N; 2.40A {Vitis vinifera}
Probab=98.73 E-value=3.8e-08 Score=107.10 Aligned_cols=43 Identities=19% Similarity=0.091 Sum_probs=40.0
Q ss_pred EeeCceEEEec----CceEEEEeccCCccccCceeecchHHHHhhcC
Q 006121 591 RRHGDIIKRTV----GGYIIVQGRADDTMNLGGIKALLLPLTFLSSP 633 (660)
Q Consensus 591 y~TGDl~~~~~----dG~l~~~GR~dd~iki~G~rv~~~eIE~~L~~ 633 (660)
||+||+++... ...|.|+||.+++++++|.+|...+||.+|.+
T Consensus 412 Yr~GD~v~v~~f~~~~p~i~~~gR~~~~l~~~Geki~~~~v~~av~~ 458 (609)
T 4b2g_A 412 YRVGDILRVTGFHNSAPQFHFVRRKNVLLSIDSDKTDEAELQKAVDN 458 (609)
T ss_dssp EEEEEEEEEEEEETTEEEEEEEEETTCCBCSSSCCBCHHHHHHHHHH
T ss_pred eecCCEEEEeecCCCCcEEEEEEecCCeEEccccCCCHHHHHHHHHH
Confidence 99999999974 57899999999999999999999999999973
No 39
>2jgp_A Tyrocidine synthetase 3; multifunctional enzyme, antibiotic biosynthesis, condensatio domain, peptide bond formation, ligase; 1.85A {Brevibacillus brevis}
Probab=98.69 E-value=2.4e-10 Score=125.91 Aligned_cols=128 Identities=12% Similarity=0.002 Sum_probs=100.7
Q ss_pred cCCCchhHHHHHHHHHHHhhhccCC-ChHHHHHHHHHhHhcCCCCCCCcchhHHHHHHhhccccCCCC----Ccc--cCC
Q 006121 16 VGLKLEEAEEFDKILKQVISCSKGL-DAREIWRELVARKVLKPWHPHGLHQLVYYSVYNDWDASIKGP----PLY--WFP 88 (660)
Q Consensus 16 ~~~~~~~~~~f~~~l~~~~~~~~~~-~hq~~Pf~~~lv~~l~~~r~~~~~~~plfqv~~~~~~~~~~~----~~~--~~~ 88 (660)
+.+++++..+|.++|++++....++ +||+|||++ |++.+++.|+. +..|+||++|++++..... ... ..+
T Consensus 377 lr~~~~~~~~~~~~l~~v~~~~~~~~~h~~~p~~~-i~~~l~~~r~~--~~~~lf~~~~~~~~~~~~~~~~~~~~~~~~~ 453 (520)
T 2jgp_A 377 MRNKPQREKTFSEFLQEVKQNALDAYGHQDYPFEE-LVEKLAIARDL--SRNPLFDTVFTFQNSTEEVMTLPECTLAPFM 453 (520)
T ss_dssp EEECCCTTSBHHHHHHHHHHHHHHHHHTCCSCHHH-HHHHTCCCCCT--TSCSSCSEEEEEECCCCSCCCCSSEEEEECS
T ss_pred EEecCCCCCCHHHHHHHHHHHHHHHHHhccCCHHH-HHHHhcCCCCC--CCCCcEEEEEEEecCCCccccCCCceeEEee
Confidence 3456667778999999999888777 899999999 99999988874 4456699999999865322 111 111
Q ss_pred Chhh--hcccchHHHHHHhCCcccccc-cCCCCccHHHHHHHHhhCHHHHHHHHHhhcccceeccc
Q 006121 89 SLDQ--SKLTNLGNALEIHGPKLLGRA-YKDPITSFRLFQKFTVEHPEAYWEIALKEISVVFREAP 151 (660)
Q Consensus 89 ~~~~--~~~~dl~~~~~~~~~~~~~~~-y~~~~~~~~lf~~~ti~~~~~~~~~~l~~~~~~~~~~~ 151 (660)
.... ..+|||.+.+.+.++++...+ |++ ++|++++++++.++|.++|+++..+++.+.
T Consensus 454 ~~~~~~~~~~~L~l~~~~~~~~l~~~~~y~~-----~~~~~~~i~~l~~~~~~lL~~l~~~p~~~l 514 (520)
T 2jgp_A 454 TDETGQHAKFDLTFSATEEREEMTIGVEYST-----SLFTRETMERFSRHFLTIAASIVQNPHIRL 514 (520)
T ss_dssp SCSSCSBCSSSEEEEEEECSSCEEEEEEEET-----TTCCHHHHHHHHHHHHHHHHHHHHCTTCBG
T ss_pred cCCCCcceeeeeEEEEEECCCeEEEEEEECh-----hhCCHHHHHHHHHHHHHHHHHHHhCccCch
Confidence 1223 678999998888888999999 999 999999999999999999999865555443
No 40
>4epl_A Jasmonic acid-amido synthetase JAR1; ANL adenylating enzyme, acyl acid-amido synthetase, adenylat ligase; HET: JAI; 2.01A {Arabidopsis thaliana}
Probab=98.63 E-value=1.6e-07 Score=101.89 Aligned_cols=133 Identities=15% Similarity=-0.015 Sum_probs=79.9
Q ss_pred ccCccE--EEeecCCCChhhHHHHHhhCCCCcee-ccccccccccccccCCcCCCCccccc-CcCCCCceE-EEE--cCC
Q 006121 470 WTKIRS--FASTGETSNVDDDLWLSSKAWYNAII-ESCGGTELSSAYIQGSLLQPQAFGAF-STATMTAGL-VIL--DEC 542 (660)
Q Consensus 470 l~~lr~--v~~gGe~l~~~~~~~~~~~~~~~~l~-n~YG~TE~~~~~~~~~~~~~~~~~~i-G~p~~~~~~-~vl--d~~ 542 (660)
+|+++. ++++|.. ..-...++...++.+++ ..|+.||+-.. +...+.. .++.. ...+++.-. ..+ |+.
T Consensus 301 WPnl~~i~~~~~G~~--~~Y~~~l~~~~g~~p~~~~~Y~ASEg~~g-i~~~p~~--~~~~~~~~L~p~~~ffEFiP~~~~ 375 (581)
T 4epl_A 301 FPNAKYVYGIMTGSM--EPYVPKLRHYAGDLPLVSHDYGSSEGWIA-ANVTPRL--SPEEATFAVIPNLGYFEFLPVSET 375 (581)
T ss_dssp CTTCCCEEEECSGGG--GGGHHHHHHHHTTSCEEECCEEETTEEEE-ECCCTTS--CTTTCCEEECTTSCEEEEEEC---
T ss_pred CCCCceEEEEeCCCh--HHHHHHHHHHcCCCccccCceeccceeee-eecCCCC--CccccceeecCCcEEEEEEecccc
Confidence 567753 3455532 22234455445567776 99999997432 2211111 11111 123333311 122 322
Q ss_pred ---------CCcCCCCCCceeEEEEeccccCCcccccCcccccccccccccCCCceeEeeCceEEEecC----ceEEEEe
Q 006121 543 ---------GVPYPDDQPCVGEVGLFPLYLGASDRLLNADHEEVYFRGMPMYKGMCLRRHGDIIKRTVG----GYIIVQG 609 (660)
Q Consensus 543 ---------~~~vp~G~~giGel~v~~~y~~~~~~~~~~~~t~~~f~~~p~~~~~r~y~TGDl~~~~~d----G~l~~~G 609 (660)
...|..|+. +||.|+..- + .+ =|++||+++...- ..+.|+|
T Consensus 376 ~~~~~~~v~l~eve~G~~--YelviTt~~-G-------------L~----------RYr~GD~v~v~g~~~~~p~~~~~g 429 (581)
T 4epl_A 376 GEGEEKPVGLTQVKIGEE--YEVVITNYA-G-------------LY----------RYRLGDVVKVIGFYNNTPQLKFIC 429 (581)
T ss_dssp ----CCCEEGGGCCTTCE--EEEEEESTT-S-------------CS----------SEEEEEEEEEEEEETTEEEEEEEE
T ss_pred cCCCCceeeHHHcCCCCe--EEEEEeecc-c-------------ee----------eEEcCCEEEEecccCCCcEEEEEe
Confidence 135677886 999983220 1 01 1999999998753 5799999
Q ss_pred ccCCccccCceeecchHHHHhhcC
Q 006121 610 RADDTMNLGGIKALLLPLTFLSSP 633 (660)
Q Consensus 610 R~dd~iki~G~rv~~~eIE~~L~~ 633 (660)
|.|++++++|.++...+||.+|.+
T Consensus 430 R~~~~l~~~Ge~~~~~~v~~al~~ 453 (581)
T 4epl_A 430 RRNLILSINIDKNTERDLQLSVES 453 (581)
T ss_dssp ETTCCBCSSSCCBCHHHHHHHHHH
T ss_pred ecCCeEEeeeeECCHHHHHHHHHH
Confidence 999999999999999999999974
No 41
>3lax_A Phenylacetate-coenzyme A ligase; structural genomics, PSI-2, protein structure initiative, midwest center for structural genomics, MCSG; 1.43A {Bacteroides vulgatus}
Probab=98.49 E-value=1e-07 Score=80.72 Aligned_cols=50 Identities=12% Similarity=0.089 Sum_probs=42.0
Q ss_pred eccCCccccCceeecchHHHHhhcCCCCceeeEEEEEeecC-cceeeeecc
Q 006121 609 GRADDTMNLGGIKALLLPLTFLSSPRSSFKCLHIYAWLYFH-KLELIFYFS 658 (660)
Q Consensus 609 GR~dd~iki~G~rv~~~eIE~~L~~~~~V~~a~vv~~~~~~-~~~l~a~~~ 658 (660)
.|.|||||++|+||+|.|||++|.+||+|.+++|++..+.. +..+.++++
T Consensus 1 srADDmIiv~G~nv~P~eIE~vl~~~p~v~~~~vv~v~~~~~~~~~~~~V~ 51 (109)
T 3lax_A 1 SNADDMIILKGVNIFPIQIETILLQFKELGSDYLITLETAESNDEMTVEVE 51 (109)
T ss_dssp CGGGSCEEETTEEECHHHHHHHHHTCTTEEEEEEEEEEEETTEEEEEEEEE
T ss_pred CCcCEEEEECCEEECHHHHHHHHHhCCCcccceEEEEeccccceeEEEEEE
Confidence 49999999999999999999999999999998888876554 445665543
No 42
>3gxs_A Phenylacetate-coenzyme A ligase; APC62324.1, structural genomics, PSI-2, protein structure initiative; 1.43A {Bacteroides vulgatus atcc 8482} PDB: 3lax_A
Probab=98.41 E-value=2.2e-07 Score=78.55 Aligned_cols=50 Identities=12% Similarity=0.089 Sum_probs=42.1
Q ss_pred eccCCccccCceeecchHHHHhhcCCCCceeeEEEEEeecC-cceeeeecc
Q 006121 609 GRADDTMNLGGIKALLLPLTFLSSPRSSFKCLHIYAWLYFH-KLELIFYFS 658 (660)
Q Consensus 609 GR~dd~iki~G~rv~~~eIE~~L~~~~~V~~a~vv~~~~~~-~~~l~a~~~ 658 (660)
||.||+||++|++|+|.|||++|.+||+|.++++++..+.. +..++++++
T Consensus 1 GR~~D~Iiv~G~nv~P~eIE~~l~~~p~v~~~~~v~v~~~~~~e~l~~~ve 51 (109)
T 3gxs_A 1 SNADDMIILKGVNIFPIQIETILLQFKELGSDYLITLETAESNDEMTVEVE 51 (109)
T ss_dssp CGGGSCEEETTEEECHHHHHHHHHTCTTEEEEEEEEEEEETTEEEEEEEEE
T ss_pred CCccCEEEECCEEECHHHHHHHHHhCCCcCCcEEEEEEcCCCceEEEEEEE
Confidence 89999999999999999999999999999977777665443 456777664
No 43
>4hvm_A Tlmii; PSI-biology, midwest center for structural genomics, MCSG, N product biosynthesis, natPro; 2.70A {Streptoalloteichus hindustanus}
Probab=98.30 E-value=1e-08 Score=111.94 Aligned_cols=128 Identities=7% Similarity=-0.114 Sum_probs=87.0
Q ss_pred CCCchh--HHHHHHHHHHHhhhccCC-ChHHHHHHHHHhH---hcCCCCCCCcchhHHHHHHhhccccCCCCC-------
Q 006121 17 GLKLEE--AEEFDKILKQVISCSKGL-DAREIWRELVARK---VLKPWHPHGLHQLVYYSVYNDWDASIKGPP------- 83 (660)
Q Consensus 17 ~~~~~~--~~~f~~~l~~~~~~~~~~-~hq~~Pf~~~lv~---~l~~~r~~~~~~~plfqv~~~~~~~~~~~~------- 83 (660)
.+.+++ ..+|.++|++++....++ +| ++||++ |++ .|+..|.. ...|+||++|+|++......
T Consensus 303 r~~~~~~~~~t~~~~l~~v~~~~~~~~~h-~~p~~~-i~~~~~~l~~~~~~--~~~~lf~~~~~~~~~~~~~~~~~~~~~ 378 (493)
T 4hvm_A 303 GVDLTGLREPSFRDLMSRTQAGFLDAVVH-YLPYHD-VVDLAVDLGVVTPP--RVAARWDVAVHLCRNAPSSSLTRGERT 378 (493)
T ss_dssp EEECTTCSSCBHHHHHHHHHHHHHHHHHT-CCCHHH-HHHHHHHTTSCBTT--BTTGGGCEEECC---------------
T ss_pred EEecCCCcCCCHHHHHHHHHHHHHHHHhh-cCCHHH-HHHHHhhhCcccCC--CCCcceeEEEEEEecCCcccccccccc
Confidence 344555 678999999999887777 89 999999 999 89888774 45566999999997553321
Q ss_pred -----cccCCCh----------------hhhcccc---hHHHHHHhCCcccccc-cCCCCccHHHHHHHHhhCHHHHHHH
Q 006121 84 -----LYWFPSL----------------DQSKLTN---LGNALEIHGPKLLGRA-YKDPITSFRLFQKFTVEHPEAYWEI 138 (660)
Q Consensus 84 -----~~~~~~~----------------~~~~~~d---l~~~~~~~~~~~~~~~-y~~~~~~~~lf~~~ti~~~~~~~~~ 138 (660)
....+.. ...++|| +.+.+...++++...+ |+. ++| +++++++.++|.+
T Consensus 379 ~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~l~l~v~~~~~~l~~~~~y~~-----~l~-~~~i~~l~~~~~~ 452 (493)
T 4hvm_A 379 LAELGVSIELFREADLIGGDTRSATDTWDGTDTWDGTTTDLSVGELGEDMVIVLDQRR-----THP-AGGGSALLDGLDA 452 (493)
T ss_dssp -----CEEEECSHHHHCC-------CCTTCCCCCCCCCEEEEEEEETTEEEEEEEECC-------------CHHHHHHHH
T ss_pred ccCCCceeeeccccccccccccccccccccccccCCcceEEEEEEeCCeEEEEEEEcc-----ccC-HHHHHHHHHHHHH
Confidence 1111000 1124677 8888888888999999 999 999 9999999999999
Q ss_pred HHhhcccceeccceec
Q 006121 139 ALKEISVVFREAPKCI 154 (660)
Q Consensus 139 ~l~~~~~~~~~~~~~~ 154 (660)
+|+++..+++.++.++
T Consensus 453 ~L~~~~~~p~~~l~~l 468 (493)
T 4hvm_A 453 AMAQAVADPSAPLPHS 468 (493)
T ss_dssp HHHHHHHCTTSBCCC-
T ss_pred HHHHHHhCCCCccccC
Confidence 9999987777666553
No 44
>1l5a_A Amide synthase, VIBH; nonribosomal peptide synthetase, NRPS condensation domain, vibriobactin, biosynthetic protein; 2.55A {Vibrio cholerae} SCOP: c.43.1.2 c.43.1.2
Probab=98.22 E-value=1.3e-08 Score=109.27 Aligned_cols=132 Identities=7% Similarity=-0.123 Sum_probs=98.9
Q ss_pred HcCCCchhHHHHHHHHHHHhhhccCC-ChHHHHHHHHHhHhcCCCCCCCcchhHHHHHHhhccccCCCC--Cccc--CCC
Q 006121 15 KVGLKLEEAEEFDKILKQVISCSKGL-DAREIWRELVARKVLKPWHPHGLHQLVYYSVYNDWDASIKGP--PLYW--FPS 89 (660)
Q Consensus 15 ~~~~~~~~~~~f~~~l~~~~~~~~~~-~hq~~Pf~~~lv~~l~~~r~~~~~~~plfqv~~~~~~~~~~~--~~~~--~~~ 89 (660)
++.++.++..+|.+++++++....++ +||++||++ |++.++..+. . .|+|+++|++++..... .... ...
T Consensus 280 plr~~~~~~~t~~~~l~~v~~~~~~~~~h~~~~~~~-i~~~l~~~~~--~--~~lf~~~~~~~~~~~~~~~~~~~~~~~~ 354 (436)
T 1l5a_A 280 PLLRLSAQQTSLGNYLKQSGQAIRSLYLHGRYRIEQ-IEQDQGLNAE--Q--SYFMSPFINILPFESPHFADCQTELKVL 354 (436)
T ss_dssp EEECCCCTTCBHHHHHHHHHHHHHHHHHTTTSCHHH-HHHHTTCCTT--C--CBCCCSEEEEECCCCCCCTTCEEEEEEE
T ss_pred EEEEecCCCCCHHHHHHHHHHHHHHHhhhcCCCHHH-HHHHhccccc--C--CCccceEEEeeccCccccCCCeeEEEec
Confidence 34566777788999999999888777 899999999 9999976553 3 35699999999755321 1100 011
Q ss_pred hhhhcccchHHHHH-HhCCcccccc-cCCCCccHHHHHHHHhhCHHHHHHHHHhhcccc---eeccceecccC
Q 006121 90 LDQSKLTNLGNALE-IHGPKLLGRA-YKDPITSFRLFQKFTVEHPEAYWEIALKEISVV---FREAPKCILDR 157 (660)
Q Consensus 90 ~~~~~~~dl~~~~~-~~~~~~~~~~-y~~~~~~~~lf~~~ti~~~~~~~~~~l~~~~~~---~~~~~~~~l~~ 157 (660)
.....+ ||.+.+. ..++++...+ |+. ++|++++++++.++|.++|+++..+ ++.++.++|.+
T Consensus 355 ~~~~~~-~l~l~v~~~~~~~l~~~~~y~~-----~~~~~~~i~~l~~~~~~~l~~l~~~~~~p~~~l~~lL~~ 421 (436)
T 1l5a_A 355 ASGSAE-GINFTFRGSPQHELCLDITADL-----ASYPQSHWQSHCERFPRFFEQLLARFQQVEQDVARLLAE 421 (436)
T ss_dssp EECCCC-SEEEEEEECTTSCEEEEEEEET-----TTSCHHHHHHHHHHHHHHHHHHHHHHHTTTTCHHHHHHS
T ss_pred CCCCcc-ceEEEEEecCCCcEEEEEEeCh-----hhCCHHHHHHHHHHHHHHHHHHHhccCCCcccHHHHhCC
Confidence 122233 7777776 4567888999 999 9999999999999999999999877 77776666444
No 45
>2xhg_A Tyrocidine synthetase A; isomerase, nonribosomal peptide synthesis, cofactor-independ epimerization; 1.50A {Brevibacillus brevis}
Probab=97.03 E-value=1.5e-05 Score=85.99 Aligned_cols=123 Identities=12% Similarity=0.086 Sum_probs=83.7
Q ss_pred cCCCchhHHHHHHHHHHHhhhccCCChHHHHHHHHHhHhcCCC---CCCCcchhHHHHHHhhccccCCCC----CcccC-
Q 006121 16 VGLKLEEAEEFDKILKQVISCSKGLDAREIWRELVARKVLKPW---HPHGLHQLVYYSVYNDWDASIKGP----PLYWF- 87 (660)
Q Consensus 16 ~~~~~~~~~~f~~~l~~~~~~~~~~~hq~~Pf~~~lv~~l~~~---r~~~~~~~plfqv~~~~~~~~~~~----~~~~~- 87 (660)
+.+.+++..+|.++|++++....++.||++||+. + +.+... +....... ++++|++++..... .....
T Consensus 312 lr~~~~~~~~~~~~l~~v~~~~~~~~~~~~~~~~-~-~~l~~~~~~~~~~~~~~--p~~~f~~~~~~~~~~~~~~~~~~~ 387 (466)
T 2xhg_A 312 VLLDLKQTAPLSDYIKLTKENMRKIPRKGIGYDI-L-KHVTLPENRGSLSFRVQ--PEVTFNYLGQFDADMRTELFTRSP 387 (466)
T ss_dssp EEEECSCCCSHHHHHHHHHHHHHHSGGGGTHHHH-H-HHTSCGGGSTTCCCCCC--CSEEEEEEEECCTTCSSSSCEECT
T ss_pred EEEecCCCCCHHHHHHHHHHHHHhCccCCcccce-e-eecccccccccccccCC--CeEEEeecCcccccccCCceeccc
Confidence 3445556678999999988886656899999986 5 566543 22223344 35889987532211 11100
Q ss_pred -CC-------------hhhhcccchHHHHHHhCCcccccc-cCCCCccHHHHHHHHhhCHHHHHHHHHhhcccce
Q 006121 88 -PS-------------LDQSKLTNLGNALEIHGPKLLGRA-YKDPITSFRLFQKFTVEHPEAYWEIALKEISVVF 147 (660)
Q Consensus 88 -~~-------------~~~~~~~dl~~~~~~~~~~~~~~~-y~~~~~~~~lf~~~ti~~~~~~~~~~l~~~~~~~ 147 (660)
+. +....+++|.+.+...++++...+ |++ ++|++.+|+++.++|.++|+++..++
T Consensus 388 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~l~~~~~y~~-----~~~~~~~i~~l~~~~~~~L~~l~~~~ 457 (466)
T 2xhg_A 388 YSGGNTLGADGKNNLSPESEVYTALNITGLIEGGELVLTFSYSS-----EQYREESIQQLSQSYQKHLLAIIAHC 457 (466)
T ss_dssp TCTTCCSSTTCTTSBCTTSBCCCSEEEEEEEETTEEEEEEEEET-----TTSCHHHHHHHHHHHHHHHHHHHHHH
T ss_pred ccCccccCcccccccccccCcceeEEEEEEEECCEEEEEEEECh-----hhCCHHHHHHHHHHHHHHHHHHHHHh
Confidence 10 012237788887766778899999 999 99999999999999999999875443
No 46
>1q9j_A PAPA5, polyketide synthase associated protein 5; conjugating enzyme PAPA5, structural genomics, PSI protein structure initiative; 2.75A {Mycobacterium tuberculosis} SCOP: c.43.1.2 c.43.1.2
Probab=92.79 E-value=0.0066 Score=63.93 Aligned_cols=107 Identities=10% Similarity=-0.101 Sum_probs=68.1
Q ss_pred HHHHHHHHHHHhhhccCC-ChHHHH-----HHHHHhHhcCCCCCCCcchhHHHHHHh-hccccCCCC---CcccC--CCh
Q 006121 23 AEEFDKILKQVISCSKGL-DAREIW-----RELVARKVLKPWHPHGLHQLVYYSVYN-DWDASIKGP---PLYWF--PSL 90 (660)
Q Consensus 23 ~~~f~~~l~~~~~~~~~~-~hq~~P-----f~~~lv~~l~~~r~~~~~~~plfqv~~-~~~~~~~~~---~~~~~--~~~ 90 (660)
..+|.+++++++....++ +||++| |++ +++.+++. .|+ +++| ++....... ..... ...
T Consensus 297 ~~~~~~~l~~v~~~~~~~~~~~~~~~~~l~~~~-i~~~~~~~-------~pl-~~~~~n~~~~~~~~~~~~~~~~~~~~~ 367 (422)
T 1q9j_A 297 NTDIVDLASDIVATLRADLANGVIQQSGLHFGT-AFEGTPPG-------LPP-LVFCTDATSFPTMRTPPGLEIEDIKGQ 367 (422)
T ss_dssp SCCHHHHHHHHHHHHHHHHHHTHHHHSCCBGGG-GGGCCCSS-------SCC-CEEEECCCCCCSCCCCTTCEEEEEEEE
T ss_pred CCCHHHHHHHHHHHHHHHHhcCeeeecccchHH-HhcccCCC-------CCc-eEEEecCCcCCCCCCCCCceeEeeecc
Confidence 346888888888887776 899995 889 88888642 233 4455 443222111 11110 001
Q ss_pred hh-hcccchHHH-HHHhCCcccccccCCCCccHHHHHHHHhhCHHHHHHHHHhhcccce
Q 006121 91 DQ-SKLTNLGNA-LEIHGPKLLGRAYKDPITSFRLFQKFTVEHPEAYWEIALKEISVVF 147 (660)
Q Consensus 91 ~~-~~~~dl~~~-~~~~~~~~~~~~y~~~~~~~~lf~~~ti~~~~~~~~~~l~~~~~~~ 147 (660)
.. ..++|+.+. +...++++...+|++ + .+++++.++|.++|+++..++
T Consensus 368 ~~~~~~~~l~~~~~~~~~~~l~~~~y~~-----~----~~~~~l~~~~~~~L~~l~~~~ 417 (422)
T 1q9j_A 368 FYCSISVPLDLYSCAVYAGQLIIEHHGH-----I----AEPGKSLEAIRSLLCTVPSEY 417 (422)
T ss_dssp ECCBSSCCCCEEEEEEETTEEEEEEESS-----C----SSHHHHHHHHHHHHHHTTTSC
T ss_pred cccCCCCCceEEEEEeeCCeEEEEEecC-----c----cchHHHHHHHHHHHHHhhcCc
Confidence 11 346677766 555667776666877 4 889999999999999986443
No 47
>2y27_A Phenylacetate-coenzyme A ligase; phenylacetic acid degradation pathway; HET: MSE PG4 ATP; 1.60A {Burkholderia cenocepacia} PDB: 2y4n_A*
Probab=88.27 E-value=3.2 Score=43.36 Aligned_cols=99 Identities=11% Similarity=0.098 Sum_probs=75.4
Q ss_pred CCCcEEEEEecCCCCCC--CceeecHHHHHHHHHHHHHHHHhc-cCCCCEEEEEcCC--CHHHHHHHHHHHHcCcEEEec
Q 006121 189 EDNTVAIVWREDRCDES--AVNLMTYKELREQVMLVANALDTM-FSKGDAIAIDMPM--TVRAVIIYLAIILAGYVVVSI 263 (660)
Q Consensus 189 ~pd~~Av~~~~~~~~~~--~~~~lTY~eL~~~a~~lA~~L~~~-v~~gd~V~i~~~~--s~~~vva~lA~lkaGa~~vpl 263 (660)
.++.+|.+....+ .++ ....+|.+.+...+..+++.+... +.++|++...++- ....+..+++.+..|+..+++
T Consensus 88 ~~~~~~~i~~TSG-TTG~PK~v~~t~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~G~~~~~~ 166 (437)
T 2y27_A 88 PQDRISRIHASSG-TTGKPTVVGYTAADIDTWANLVARSIRAAGARRGDKVHVSYGYGLFTGGLGAHYGAERAGLTVIPF 166 (437)
T ss_dssp CGGGCCEEEECCC-TTSSCCEEEECHHHHHHHHHHHHHHHHHTTCCTTCEEEECSCCSSSHHHHHHHHHHHHTTCEEECC
T ss_pred ChhHeEEEEECCC-CCCCceEEecCHHHHHHHHHHHHHHHHHcCCCCCCEEEEcccccccccchHHHHHHHHcCCEEEeC
Confidence 4566665544332 233 334689999998888888877778 9999999999986 344455678899999999987
Q ss_pred CCCCCHHHHHHHHHhcCeeEEEeecc
Q 006121 264 ADSFAAREIATRLRVSKAKGIFTQDF 289 (660)
Q Consensus 264 ~p~~p~~~l~~~l~~~~~~~il~~~~ 289 (660)
+. ..++++...+++.++.+++....
T Consensus 167 ~~-~~~~~~~~~i~~~~~t~l~~~Ps 191 (437)
T 2y27_A 167 GG-GQTEKQVQLIQDFRPDIIMVTPS 191 (437)
T ss_dssp CS-CCHHHHHHHHHHHCCSEEEECHH
T ss_pred CC-CCHHHHHHHHHHhCCCEEEECHH
Confidence 55 47889999999999999988764
No 48
>2y4o_A Phenylacetate-coenzyme A ligase; phenylacetic acid degradation pathway; HET: DLL; 1.90A {Burkholderia cenocepacia}
Probab=87.29 E-value=3.8 Score=42.86 Aligned_cols=99 Identities=14% Similarity=0.096 Sum_probs=75.1
Q ss_pred CCCcEEEEEecCCCCCCC--ceeecHHHHHHHHHHHHHHHHhc-cCCCCEEEEEcCCC--HHHHHHHHHHHHcCcEEEec
Q 006121 189 EDNTVAIVWREDRCDESA--VNLMTYKELREQVMLVANALDTM-FSKGDAIAIDMPMT--VRAVIIYLAIILAGYVVVSI 263 (660)
Q Consensus 189 ~pd~~Av~~~~~~~~~~~--~~~lTY~eL~~~a~~lA~~L~~~-v~~gd~V~i~~~~s--~~~vva~lA~lkaGa~~vpl 263 (660)
.++.+|.+....+ .++. ...+|.+.+...+..+++.+... +.++|++..+++-+ ...+..+++.+..|+..+++
T Consensus 90 ~~~~~~~i~~TSG-TTG~PK~v~~t~~~~~~~~~~~~~~~~~~~~~~~d~~l~~~~~~~~~~~~~~~~~~~~~G~~~~~~ 168 (443)
T 2y4o_A 90 PREQVVRVHASSG-TTGKPTVVGYTARDIDTWANVTARSIRAAGGRPGDTLHNAFGYGLFTGGLGIHYGAERLGCMVVPM 168 (443)
T ss_dssp CGGGCCEEEEECC-SSSSCEEEEECHHHHHHHHHHHHHHHHHTTCCTTCEEEECSCCSSSHHHHHHHHHHHHHTCEEECC
T ss_pred ChhheEEEEECCC-CCCCceEEecCHHHHHHHHHHHHHHHHHcCCCCCCEEEEeccCcccccHHHHHHHHHHcCCEEEEC
Confidence 4566665443322 2333 34679999998888888878778 99999999998863 44455678889999999987
Q ss_pred CCCCCHHHHHHHHHhcCeeEEEeecc
Q 006121 264 ADSFAAREIATRLRVSKAKGIFTQDF 289 (660)
Q Consensus 264 ~p~~p~~~l~~~l~~~~~~~il~~~~ 289 (660)
++. ..+++...+++.++.++.....
T Consensus 169 ~~~-~~~~~~~~i~~~~~t~l~~~Ps 193 (443)
T 2y4o_A 169 SGG-QTEKQVQLIRDFEPKIILVTPS 193 (443)
T ss_dssp CSC-CHHHHHHHHHHHCCSEEEECHH
T ss_pred CCC-CHHHHHHHHHHhCCcEEEECHH
Confidence 654 7888999999999999988764
No 49
>3qov_A Phenylacetate-coenzyme A ligase; acetyl-COA synthetase-like, structural genomics, joint cente structural genomics, JCSG; HET: MSE ADP COA; 2.20A {Bacteroides thetaiotaomicron} PDB: 3s89_A*
Probab=86.28 E-value=4.4 Score=42.25 Aligned_cols=98 Identities=12% Similarity=0.050 Sum_probs=76.3
Q ss_pred CcEEEEEecCCCCCC-CceeecHHHHHHHHHHHHHHHHhc-cCCCCEEEEEcCC--CHHHHHHHHHHHHcCcEEEecCCC
Q 006121 191 NTVAIVWREDRCDES-AVNLMTYKELREQVMLVANALDTM-FSKGDAIAIDMPM--TVRAVIIYLAIILAGYVVVSIADS 266 (660)
Q Consensus 191 d~~Av~~~~~~~~~~-~~~~lTY~eL~~~a~~lA~~L~~~-v~~gd~V~i~~~~--s~~~vva~lA~lkaGa~~vpl~p~ 266 (660)
+.+|.+....++.+. ....+|.+.+...+..+++.+... +.++|++...++- ....+..+++.+..|+..++.++.
T Consensus 86 ~~~a~i~~TSGTTG~PK~v~~th~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~l~~G~~~~~~~~~ 165 (436)
T 3qov_A 86 RDGVRIHSSSGTTGNPTVIVHSQHDLDSWANLVARCLYMVGIRKTDVFQNSSGYGMFTGGLGFQYGAERLGCLTVPAAAG 165 (436)
T ss_dssp HHEEEEEECSCSSSCCCEEEEEHHHHHHHHHHHHHHHHHTTCCTTSEEEECSCCTTCHHHHHHHHHHHHHTCEEECCCSC
T ss_pred CCeEEEEECCCcCCCCeEEEECHHHHHHHHHHHHHHHHHcCCCCCCEEEECcccccchhHHHHHHHHHHcCCEEEeCCCC
Confidence 777766544332222 344689999999999898888888 9999999999874 445566778899999999887654
Q ss_pred CCHHHHHHHHHhcCeeEEEeecc
Q 006121 267 FAAREIATRLRVSKAKGIFTQDF 289 (660)
Q Consensus 267 ~p~~~l~~~l~~~~~~~il~~~~ 289 (660)
.++++...+++.++.+++....
T Consensus 166 -~~~~~~~~i~~~~~t~~~~~P~ 187 (436)
T 3qov_A 166 -NSKRQIKFISDFKTTALHAIPS 187 (436)
T ss_dssp -CHHHHHHHHHHHTCCEEECCHH
T ss_pred -CHHHHHHHHHHHCCCEEEECHH
Confidence 6788899999999999988764
No 50
>3ivr_A Putative long-chain-fatty-acid COA ligase; structural genomics, PSI-2, protein S initiative, fatty acid synthesis; HET: GOL; 2.00A {Rhodopseudomonas palustris} SCOP: e.23.1.0
Probab=81.83 E-value=7.8 Score=41.29 Aligned_cols=95 Identities=13% Similarity=0.016 Sum_probs=72.9
Q ss_pred CCCCeEEEEecCCCCCCcceEEecchhhHHHHH---HhhHhcCCCCCCEEEEecCccccchhhHHHHhhhcCcEEEEecC
Q 006121 354 PVDAVVNILFSSGTTGEPKAIPWTQLSSIRCTA---EGWAHIDLKVGDVYCWPTNLGWVMGPVILFSSFLNGATLALYQG 430 (660)
Q Consensus 354 ~~~~~a~i~~TSGSTG~PKgV~~sh~~l~~~~~---~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~l~~G~~lv~~~~ 430 (660)
.|+.+|++. .+..+|++.+...+. ......++.++|++...++-+... +..+++++..|+..+.++.
T Consensus 19 ~pd~~Al~~---------~~~~~Ty~eL~~~~~~lA~~L~~~Gv~~gd~V~i~~~~~~~~-~~~~lA~~~~Ga~~vpl~~ 88 (509)
T 3ivr_A 19 FPDRTAFMV---------DGVRLTHRDYLARAERLASGLLRDGVHTGDRVAILSQNCSEM-IELIGAVALIGAILLPVNY 88 (509)
T ss_dssp STTSEEEEE---------TTEEEEHHHHHHHHHHHHHHHHHTTCCTTCEEEEECCSCHHH-HHHHHHHHHTTCEEEECCT
T ss_pred CCCceEEEE---------CCcEEcHHHHHHHHHHHHHHHHHcCCCCCCEEEEEcCCCHHH-HHHHHHHHHhCCEEEecCC
Confidence 567788764 135689888755443 344456899999999888777553 3457789999999999987
Q ss_pred CCChhhHHHHHHHcCCeEEeecHHHHHH
Q 006121 431 SPLERSFGKFVQDAGVTVLGTVPSLVKA 458 (660)
Q Consensus 431 ~~~~~~l~~~i~~~~vt~l~~~P~~l~~ 458 (660)
....+++...+++.++..+...+.....
T Consensus 89 ~~~~~~l~~~l~~~~~~~vi~~~~~~~~ 116 (509)
T 3ivr_A 89 RLNADEIAFVLGDGAPSVVVAGTDYRDI 116 (509)
T ss_dssp TSCHHHHHHHHHHHCEEEEEECSTTHHH
T ss_pred CCCHHHHHHHHHhcCceEEEECcchhhh
Confidence 7788899999999999999988776555
No 51
>1v25_A Long-chain-fatty-acid-COA synthetase; ligase, structural genomics, riken structural genomics/proteomics initiative, RSGI; HET: ANP; 2.30A {Thermus thermophilus} SCOP: e.23.1.1 PDB: 1ult_A* 1v26_A*
Probab=81.82 E-value=11 Score=40.44 Aligned_cols=100 Identities=16% Similarity=0.002 Sum_probs=73.7
Q ss_pred CCCCeEEEEecCCCCCCcceEEecchhhHHHH---HHhhHhcCCCCCCEEEEecCccccchhhHHHHhhhcCcEEEEecC
Q 006121 354 PVDAVVNILFSSGTTGEPKAIPWTQLSSIRCT---AEGWAHIDLKVGDVYCWPTNLGWVMGPVILFSSFLNGATLALYQG 430 (660)
Q Consensus 354 ~~~~~a~i~~TSGSTG~PKgV~~sh~~l~~~~---~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~l~~G~~lv~~~~ 430 (660)
.|+.+|++....+ .+..+|.+.+...+ .......++.++|++...++-+...- ..+|+++..|+..+.++.
T Consensus 31 ~p~~~a~~~~~~~-----~~~~~Ty~el~~~~~~lA~~L~~~Gv~~gd~V~i~~~n~~e~~-~~~lA~~~~Gav~vpl~~ 104 (541)
T 1v25_A 31 FGRKEVVSRLHTG-----EVHRTTYAEVYQRARRLMGGLRALGVGVGDRVATLGFNHFRHL-EAYFAVPGMGAVLHTANP 104 (541)
T ss_dssp STTCEEEEECTTS-----CEEEEEHHHHHHHHHHHHHHHHHTTCCTTCEEEEECCSSHHHH-HHHHHHHHTTCEEEECCT
T ss_pred CCCceEEEEecCC-----CCceecHHHHHHHHHHHHHHHHHcCCCCCCEEEEEcCCcHHHH-HHHHHHHhcCcEEEecCc
Confidence 4577777643211 34568888775443 34445568999999998888775533 446789999999999987
Q ss_pred CCChhhHHHHHHHcCCeEEeecHHHHHHH
Q 006121 431 SPLERSFGKFVQDAGVTVLGTVPSLVKAW 459 (660)
Q Consensus 431 ~~~~~~l~~~i~~~~vt~l~~~P~~l~~l 459 (660)
....+++...++..++.++.+.+.....+
T Consensus 105 ~~~~~~l~~~l~~~~~~~vi~~~~~~~~~ 133 (541)
T 1v25_A 105 RLSPKEIAYILNHAEDKVLLFDPNLLPLV 133 (541)
T ss_dssp TSCHHHHHHHHHHHTCSEEEECGGGHHHH
T ss_pred ccCHHHHHHHHHhCCCcEEEEChhHHHHH
Confidence 77788999999999999999988765544
No 52
>3rix_A Luciferase, luciferin 4-monooxygenase; oxidoreductase, photoprotein, luminescence, aspulvinone, natural product extracts; HET: 923; 1.70A {Photinus pyralis} SCOP: e.23.1.1 PDB: 1ba3_A 1lci_A* 4e5d_A* 3ies_A* 3iep_A* 3ier_A* 4g36_A* 4g37_A* 3qya_A
Probab=81.16 E-value=4.2 Score=44.03 Aligned_cols=101 Identities=12% Similarity=0.009 Sum_probs=73.7
Q ss_pred CCCeEEEEecCCCCCCcceEEecchhhHHHH---HHhhHhcCCCCCCEEEEecCccccchhhHHHHhhhcCcEEEEecCC
Q 006121 355 VDAVVNILFSSGTTGEPKAIPWTQLSSIRCT---AEGWAHIDLKVGDVYCWPTNLGWVMGPVILFSSFLNGATLALYQGS 431 (660)
Q Consensus 355 ~~~~a~i~~TSGSTG~PKgV~~sh~~l~~~~---~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~l~~G~~lv~~~~~ 431 (660)
|+.+|.+.+..+.++ ..+|.+.+...+ +......++.++|++...++-+... +..+|+++..|+..+.++..
T Consensus 34 p~~~a~~a~~~~~~~----~~~Ty~el~~~~~~lA~~L~~~Gv~~gd~V~i~~~n~~e~-~~~~lA~~~~Gav~vpl~~~ 108 (550)
T 3rix_A 34 ALVPGTIAFTDAHIE----VNITYAEYFEMSVRLAEAMKRYGLNTNHRIVVCSENSLQF-FMPVLGALFIGVAVAPANDI 108 (550)
T ss_dssp HTSTTCEEEEETTTC----CEEEHHHHHHHHHHHHHHHHHHTCCTTCEEEEECSSCTTT-HHHHHHHHHHTCEEEECCTT
T ss_pred CCCceEEEeeecCCC----cEeEHHHHHHHHHHHHHHHHHhCCCCCCEEEEEcCCcccH-HHHHHHHHHcCCEEeecCCc
Confidence 455555544444433 468888875443 3344456899999999888876553 34567999999999999877
Q ss_pred CChhhHHHHHHHcCCeEEeecHHHHHHHH
Q 006121 432 PLERSFGKFVQDAGVTVLGTVPSLVKAWR 460 (660)
Q Consensus 432 ~~~~~l~~~i~~~~vt~l~~~P~~l~~l~ 460 (660)
...+++...++..++.+++..+..+..+.
T Consensus 109 ~~~~~l~~~l~~~~~~~vi~~~~~~~~~~ 137 (550)
T 3rix_A 109 YNERELLNSMNISQPTVVFVSKKGLQKIL 137 (550)
T ss_dssp CCHHHHHHHHHHHCCSEEEECGGGHHHHH
T ss_pred CCHHHHHHHHHhcCCeEEEEcHHHHHHHH
Confidence 78889999999999999998877665543
No 53
>3g7s_A Long-chain-fatty-acid--COA ligase (FADD-1); protein structure initiative, PSI-II, NYSGXRC, 11193J, structural genomics; 2.15A {Archaeoglobus fulgidus dsm 4304}
Probab=79.53 E-value=12 Score=40.37 Aligned_cols=104 Identities=11% Similarity=-0.012 Sum_probs=75.2
Q ss_pred CCCCeEEEEecCCC-CCCcceEEecchhhHHH---HHHhhHhcCCCCCCEEEEecCccccchhhHHHHhhhcCcEEEEec
Q 006121 354 PVDAVVNILFSSGT-TGEPKAIPWTQLSSIRC---TAEGWAHIDLKVGDVYCWPTNLGWVMGPVILFSSFLNGATLALYQ 429 (660)
Q Consensus 354 ~~~~~a~i~~TSGS-TG~PKgV~~sh~~l~~~---~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~l~~G~~lv~~~ 429 (660)
.|+.+|++....+. .+. .-.+|.+.+... ++......++.++|++...++-+...- ..+++++..|+..+.++
T Consensus 32 ~p~~~A~~~~~~~~~~~~--~~~~Ty~el~~~~~~lA~~L~~~Gv~~gd~V~i~~~~~~~~~-~~~lA~~~~G~~~vpl~ 108 (549)
T 3g7s_A 32 FGEKTAIISAEPKFPSEF--PESMNFLEICEVTKKLASGISRKGVRKGEHVGVCIPNSIDYV-MTIYALWRVAATPVPIN 108 (549)
T ss_dssp HTTSEEEEEESSCCCCSS--CSEEEHHHHHHHHHHHHHHHHHTTCCTTCEEEEECCSSHHHH-HHHHHHHHTTCEEEECC
T ss_pred CCCceEEEeCCCcccccc--cceeeHHHHHHHHHHHHHHHHHcCCCCCCEEEEECCCCHHHH-HHHHHHHHhCCEEEccC
Confidence 46788877653221 121 245788777543 344445568999999998888775533 44678999999999998
Q ss_pred CCCChhhHHHHHHHcCCeEEeecHHHHHHHH
Q 006121 430 GSPLERSFGKFVQDAGVTVLGTVPSLVKAWR 460 (660)
Q Consensus 430 ~~~~~~~l~~~i~~~~vt~l~~~P~~l~~l~ 460 (660)
.....+++...++..+++.+...+.....+.
T Consensus 109 ~~~~~~~l~~il~~~~~~~~i~~~~~~~~~~ 139 (549)
T 3g7s_A 109 PMYKSFELEHILNDSEATTLVVHSMLYENFK 139 (549)
T ss_dssp TTCCHHHHHHHHHHTTCSEEEEEGGGHHHHH
T ss_pred CCCCHHHHHHHHHhcCCCEEEEChHHHHHHH
Confidence 7778889999999999999998877665543
No 54
>3c5e_A Acyl-coenzyme A synthetase ACSM2A, mitochondrial; middle-chain acyl-COA synthetase, xenobiotic/medium-chain FA COA ligase; HET: ATP; 1.60A {Homo sapiens} PDB: 2vze_A 3b7w_A* 3day_A* 3eq6_A* 3eyn_A* 3gpc_A* 2wd9_A*
Probab=78.38 E-value=17 Score=39.43 Aligned_cols=102 Identities=8% Similarity=-0.045 Sum_probs=74.4
Q ss_pred CCCCeEEEEecCCCCCCcceEEecchhhHHHHH---HhhHhc-CCCCCCEEEEecCccccchhhHHHHhhhcCcEEEEec
Q 006121 354 PVDAVVNILFSSGTTGEPKAIPWTQLSSIRCTA---EGWAHI-DLKVGDVYCWPTNLGWVMGPVILFSSFLNGATLALYQ 429 (660)
Q Consensus 354 ~~~~~a~i~~TSGSTG~PKgV~~sh~~l~~~~~---~~~~~~-~~~~~~~~l~~~~~~~~~~~~~~~~~l~~G~~lv~~~ 429 (660)
.|+.+|++.... .| +...+|.+.+...+. ...... ++.++|++...++-+...- ..+|+++..|+..+.++
T Consensus 56 ~p~~~al~~~~~--~g--~~~~~Ty~el~~~~~~lA~~L~~~~Gv~~gd~V~i~~~n~~e~~-~~~lA~~~~Ga~~vpl~ 130 (570)
T 3c5e_A 56 RPPSPALWWVNG--KG--KELMWNFRELSENSQQAANVLSGACGLQRGDRVAVVLPRVPEWW-LVILGCIRAGLIFMPGT 130 (570)
T ss_dssp SCCCEEEEEECS--SS--CEEEEEHHHHHHHHHHHHHHHHTTTCCCTTCEEEEECCSCHHHH-HHHHHHHHHTCEEEECC
T ss_pred CCCceEEEEEcC--CC--ceeEEeHHHHHHHHHHHHHHHHHccCCCCCCEEEEEcCCCHHHH-HHHHHHHHcCeEEEecC
Confidence 567788765421 12 245788888754443 333344 8899999998888776533 44678999999999988
Q ss_pred CCCChhhHHHHHHHcCCeEEeecHHHHHHHH
Q 006121 430 GSPLERSFGKFVQDAGVTVLGTVPSLVKAWR 460 (660)
Q Consensus 430 ~~~~~~~l~~~i~~~~vt~l~~~P~~l~~l~ 460 (660)
....++++...++..++..+++.+.....+.
T Consensus 131 ~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~ 161 (570)
T 3c5e_A 131 IQMKSTDILYRLQMSKAKAIVAGDEVIQEVD 161 (570)
T ss_dssp TTCCHHHHHHHHHHHTCSEEEEETTTHHHHH
T ss_pred CCCCHHHHHHHHHhcCCeEEEechHHHHHHH
Confidence 7777889999999999999998877665553
No 55
>3ni2_A 4-coumarate:COA ligase; 4CL, phenylpropanoid biosynthesis; HET: AYL EPE; 1.90A {Populus tomentosa} PDB: 3a9v_A* 3a9u_A*
Probab=76.82 E-value=9.4 Score=41.00 Aligned_cols=97 Identities=15% Similarity=0.100 Sum_probs=72.0
Q ss_pred CCCCeEEEEecCCCCCCcceEEecchhhHHH---HHHhhHhcCCCCCCEEEEecCccccchhhHHHHhhhcCcEEEEecC
Q 006121 354 PVDAVVNILFSSGTTGEPKAIPWTQLSSIRC---TAEGWAHIDLKVGDVYCWPTNLGWVMGPVILFSSFLNGATLALYQG 430 (660)
Q Consensus 354 ~~~~~a~i~~TSGSTG~PKgV~~sh~~l~~~---~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~l~~G~~lv~~~~ 430 (660)
.|+.+|++. +.+| -.+|++.+... +.......++.++|++...++-+... +..+|+++..|+..+.++.
T Consensus 35 ~p~~~a~~~---~~~~----~~~Ty~el~~~~~~lA~~L~~~Gv~~gd~V~i~~~~~~~~-~~~~la~~~~Gav~vpl~~ 106 (536)
T 3ni2_A 35 HSSKPCLIN---GANG----DVYTYADVELTARRVASGLNKIGIQQGDVIMLFLPSSPEF-VLAFLGASHRGAIITAANP 106 (536)
T ss_dssp STTSEEEEE---TTTC----CEEEHHHHHHHHHHHHHHHHHTTCCTTCEEEEECCSSHHH-HHHHHHHHHHTCEEEECCT
T ss_pred CCCceEEEE---CCCC----CEEEHHHHHHHHHHHHHHHHHcCCCCCCEEEEEcCCcHHH-HHHHHHHHHhCCEEeccCC
Confidence 567888764 2222 35788887544 34444557899999999888776553 3456789999999999987
Q ss_pred CCChhhHHHHHHHcCCeEEeecHHHHHH
Q 006121 431 SPLERSFGKFVQDAGVTVLGTVPSLVKA 458 (660)
Q Consensus 431 ~~~~~~l~~~i~~~~vt~l~~~P~~l~~ 458 (660)
...++++...++..++..+...+.....
T Consensus 107 ~~~~~~l~~~l~~~~~~~~i~~~~~~~~ 134 (536)
T 3ni2_A 107 FSTPAELAKHAKASRAKLLITQACYYEK 134 (536)
T ss_dssp TCCHHHHHHHHHHHTEEEEEECGGGTHH
T ss_pred CCCHHHHHHHHHhcCCEEEEEChHHHHH
Confidence 7788899999999999999987755443
No 56
>1t5h_X 4-chlorobenzoyl COA ligase; adenylate-forming coenzyme A ligase domain alternation confo change; 2.00A {Alcaligenes SP} SCOP: e.23.1.1 PDB: 1t5d_X 3cw9_A* 3cw8_X* 2qvz_X* 2qw0_X* 3dlp_X* 2qvx_X* 2qvy_X*
Probab=74.90 E-value=17 Score=38.65 Aligned_cols=98 Identities=10% Similarity=-0.014 Sum_probs=70.8
Q ss_pred CCCCeEEEEecCCCCCCcceEEecchhhHHHH---HHhhHhcCCCCCCEEEEecCccccchhhHHHHhhhcCcEEEEecC
Q 006121 354 PVDAVVNILFSSGTTGEPKAIPWTQLSSIRCT---AEGWAHIDLKVGDVYCWPTNLGWVMGPVILFSSFLNGATLALYQG 430 (660)
Q Consensus 354 ~~~~~a~i~~TSGSTG~PKgV~~sh~~l~~~~---~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~l~~G~~lv~~~~ 430 (660)
.|+.+|++.. . ++..+|++.+...+ .......++.++|++...++-+...- ..+++++..|+..+.++.
T Consensus 15 ~p~~~a~~~~---~----~~~~~Ty~el~~~~~~~A~~L~~~Gv~~gd~V~i~~~~~~~~~-~~~lA~~~~G~~~vpl~~ 86 (504)
T 1t5h_X 15 APDHCALAVP---A----RGLRLTHAELRARVEAVAARLHADGLRPQQRVAVVAPNSADVV-IAILALHRLGAVPALLNP 86 (504)
T ss_dssp CTTSEEEEET---T----TTEEEEHHHHHHHHHHHHHHHHHTTCCTTCEEEEECCSCHHHH-HHHHHHHHHTCEEEEECT
T ss_pred CCCceEEEEc---C----CCceeEHHHHHHHHHHHHHHHHHcCCCCCCEEEEEcCCCHHHH-HHHHHHHHhCcEEEecCC
Confidence 4677777642 1 13568888875443 33344568999999998888776543 446789999999999987
Q ss_pred CCChhhHHHHHHHcCCeEEee--cHHHHHHH
Q 006121 431 SPLERSFGKFVQDAGVTVLGT--VPSLVKAW 459 (660)
Q Consensus 431 ~~~~~~l~~~i~~~~vt~l~~--~P~~l~~l 459 (660)
...++++...+++.+++.+.. .+.....+
T Consensus 87 ~~~~~~l~~~l~~~~~~~~i~~~~~~~~~~~ 117 (504)
T 1t5h_X 87 RLKSAELAELIKRGEMTAAVIAVGRQVADAI 117 (504)
T ss_dssp TSCHHHHHHHHHHTTCSEEEECC--CHHHHH
T ss_pred ccChHHHHHHHhhcCCcEEEEecchhhhhhh
Confidence 777889999999999999888 55554444
No 57
>3t5a_A Long-chain-fatty-acid--AMP ligase FADD28; acetyl-COA synthetase like fold, AMP-binding; 2.05A {Mycobacterium tuberculosis} PDB: 3e53_A
Probab=73.28 E-value=21 Score=37.46 Aligned_cols=104 Identities=14% Similarity=0.047 Sum_probs=73.5
Q ss_pred CCCCeEEEEecC--CCCCCcceEEecchhhHHHHHHhh---HhcCCCCCCEEEEecCccccchhhHHHHhhhcCcEEEEe
Q 006121 354 PVDAVVNILFSS--GTTGEPKAIPWTQLSSIRCTAEGW---AHIDLKVGDVYCWPTNLGWVMGPVILFSSFLNGATLALY 428 (660)
Q Consensus 354 ~~~~~a~i~~TS--GSTG~PKgV~~sh~~l~~~~~~~~---~~~~~~~~~~~l~~~~~~~~~~~~~~~~~l~~G~~lv~~ 428 (660)
.|+.+|++.... +.+| ....+|.+.+...+.... ...+. ++|++...++-+... +..+|+++..|+..+.+
T Consensus 37 ~pd~~Al~~~~~~~~~~g--~~~~~Ty~el~~~~~~lA~~L~~~g~-~gd~V~i~~~n~~e~-~~~~lA~~~~G~v~vpl 112 (480)
T 3t5a_A 37 QPHDPAFTFMDYEQDWDG--VAITLTWSQLYRRTLNVAQELSRCGS-TGDRVVISAPQGLEY-VVAFLGALQAGRIAVPL 112 (480)
T ss_dssp STTSEEEEEEETTTCTTC--EEEEEEHHHHHHHHHHHHHHHTTSSC-TTCEEEEECCSSHHH-HHHHHHHHHTTCEEEEE
T ss_pred CCCCceEEEecccCCCCC--ceEEEcHHHHHHHHHHHHHHHHhcCC-CCCEEEEEcCCcHHH-HHHHHHHHHhCcEEEee
Confidence 568888776542 2223 346789888865444333 34455 899998887776553 34467899999999988
Q ss_pred cC---CCChhhHHHHHHHcCCeEEeecHHHHHHHHh
Q 006121 429 QG---SPLERSFGKFVQDAGVTVLGTVPSLVKAWRN 461 (660)
Q Consensus 429 ~~---~~~~~~l~~~i~~~~vt~l~~~P~~l~~l~~ 461 (660)
+. ....+++...++..++..+...+.....+..
T Consensus 113 ~~~~~~~~~~~l~~il~~~~~~~vi~~~~~~~~~~~ 148 (480)
T 3t5a_A 113 SVPQGGVTDERSDSVLSDSSPVAILTTSSAVDDVVQ 148 (480)
T ss_dssp CSCCSCTTCCHHHHHHHHHCCSEEEECTTTHHHHHH
T ss_pred CCCCccchHHHHHHHHHhCCCCEEEeChhHHHHHHH
Confidence 65 3356789999999999999998877666543
No 58
>2v7b_A Benzoate-coenzyme A ligase; benzoate oxidation, benzoate COA ligase; 1.84A {Burkholderia xenovorans}
Probab=73.06 E-value=12 Score=39.95 Aligned_cols=96 Identities=7% Similarity=-0.068 Sum_probs=70.9
Q ss_pred CCCCeEEEEecCCCCCCcceEEecchhhHHHH---HHhhHhcCCCCCCEEEEecCccccchhhHHHHhhhcCcEEEEecC
Q 006121 354 PVDAVVNILFSSGTTGEPKAIPWTQLSSIRCT---AEGWAHIDLKVGDVYCWPTNLGWVMGPVILFSSFLNGATLALYQG 430 (660)
Q Consensus 354 ~~~~~a~i~~TSGSTG~PKgV~~sh~~l~~~~---~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~l~~G~~lv~~~~ 430 (660)
.|+.+|++.. +..+|++.+...+ .......++.++|++...++-+...- ..+++++..|+..+.++.
T Consensus 36 ~p~~~A~~~~---------~~~~Ty~el~~~~~~lA~~L~~~Gv~~gd~V~i~~~n~~~~~-~~~lA~~~~G~~~vpl~~ 105 (529)
T 2v7b_A 36 RAGKTAYIDD---------TGSTTYGELEERARRFASALRTLGVHPEERILLVMLDTVALP-VAFLGALYAGVVPVVANT 105 (529)
T ss_dssp GTTSEEEECS---------SCEEEHHHHHHHHHHHHHHHHHTTCCTTCEEEEECCSSTHHH-HHHHHHHHHTCEEEECCT
T ss_pred cCCceEEEeC---------CCCccHHHHHHHHHHHHHHHHHcCCCCCCEEEEEcCCcHHHH-HHHHHHHHcCceEEecCc
Confidence 5677777632 1357888775443 33445568999999998888776533 446789999999999887
Q ss_pred CCChhhHHHHHHHcCCeEEeecHHHHHHH
Q 006121 431 SPLERSFGKFVQDAGVTVLGTVPSLVKAW 459 (660)
Q Consensus 431 ~~~~~~l~~~i~~~~vt~l~~~P~~l~~l 459 (660)
...++++...+++.++..+...+.....+
T Consensus 106 ~~~~~~l~~~l~~~~~~~vi~~~~~~~~~ 134 (529)
T 2v7b_A 106 LLTPADYVYMLTHSHARAVIASGALVQNV 134 (529)
T ss_dssp TCCHHHHHHHHHHHTCSEEEEEGGGHHHH
T ss_pred ccCHHHHHHHHhccCCeEEEechhhhhHH
Confidence 77788999999999999998877655433
No 59
>3r44_A Fatty acyl COA synthetase FADD13 (fatty-acyl-COA synthetase); ligase; HET: HIS; 1.80A {Mycobacterium tuberculosis} PDB: 3t5c_A 3t5b_A
Probab=72.79 E-value=17 Score=38.74 Aligned_cols=95 Identities=9% Similarity=-0.010 Sum_probs=70.8
Q ss_pred CCCCeEEEEecCCCCCCcceEEecchhhHHH---HHHhhHhcCCCCCCEEEEecCccccchhhHHHHhhhcCcEEEEecC
Q 006121 354 PVDAVVNILFSSGTTGEPKAIPWTQLSSIRC---TAEGWAHIDLKVGDVYCWPTNLGWVMGPVILFSSFLNGATLALYQG 430 (660)
Q Consensus 354 ~~~~~a~i~~TSGSTG~PKgV~~sh~~l~~~---~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~l~~G~~lv~~~~ 430 (660)
.|+.+|++.. | +...+|.+.+... +.......++.++|++...++-+...- ..+|+++..|+..+.++.
T Consensus 29 ~p~~~A~~~~--~-----~~~~~Ty~eL~~~~~~lA~~L~~~Gv~~gd~V~i~~~~~~~~~-~~~lA~~~~G~~~vpl~~ 100 (517)
T 3r44_A 29 SPRLQAYVEP--S-----TDVRMTYAQMNALANRCADVLTALGIAKGDRVALLMPNSVEFC-CLFYGAAKLGAVAVPINT 100 (517)
T ss_dssp STTSEEEEEG--G-----GTEEEEHHHHHHHHHHHHHHHHHTTCCTTCEEEEECCSSHHHH-HHHHHHHHHTCEEEECCT
T ss_pred CCCCeEEEeC--C-----cCceeeHHHHHHHHHHHHHHHHHcCCCCcCEEEEEcCCCHHHH-HHHHHHHHhCcEEEecCc
Confidence 5677887643 1 2346888887544 344445568999999998888765533 446789999999999987
Q ss_pred CCChhhHHHHHHHcCCeEEeecHHHH
Q 006121 431 SPLERSFGKFVQDAGVTVLGTVPSLV 456 (660)
Q Consensus 431 ~~~~~~l~~~i~~~~vt~l~~~P~~l 456 (660)
....+++...++..++.++...+...
T Consensus 101 ~~~~~~l~~~l~~~~~~~vi~~~~~~ 126 (517)
T 3r44_A 101 RLAAPEVSFILSDSGSKVVIYGAPSA 126 (517)
T ss_dssp TSCHHHHHHHHHHHTCSEEEECGGGH
T ss_pred ccCHHHHHHHHHhcCceEEEECCchH
Confidence 77788999999999999988766543
No 60
>1amu_A GRSA, gramicidin synthetase 1; peptide synthetase, adenylate forming; HET: PHE AMP; 1.90A {Brevibacillus brevis} SCOP: e.23.1.1
Probab=71.99 E-value=18 Score=39.03 Aligned_cols=96 Identities=9% Similarity=-0.044 Sum_probs=71.6
Q ss_pred CCCCeEEEEecCCCCCCcceEEecchhhHHHH---HHhhHhcCCCCCCEEEEecCccccchhhHHHHhhhcCcEEEEecC
Q 006121 354 PVDAVVNILFSSGTTGEPKAIPWTQLSSIRCT---AEGWAHIDLKVGDVYCWPTNLGWVMGPVILFSSFLNGATLALYQG 430 (660)
Q Consensus 354 ~~~~~a~i~~TSGSTG~PKgV~~sh~~l~~~~---~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~l~~G~~lv~~~~ 430 (660)
.|+.+|++. . +-.+|.+.+...+ .......++.++|++...++-+...- ..+|+++..|+..+.++.
T Consensus 52 ~p~~~Al~~-~--------~~~~Ty~eL~~~~~~lA~~L~~~Gv~~gd~V~i~~~n~~e~~-~~~lA~~~~Gav~vpl~~ 121 (563)
T 1amu_A 52 RPNNVAIVC-E--------NEQLTYHELNVKANQLARIFIEKGIGKDTLVGIMMEKSIDLF-IGILAVLKAGGAYVPIDI 121 (563)
T ss_dssp CTTSEEEEE-T--------TEEEEHHHHHHHHHHHHHHHHHTTCCTTCEEEEECCSSHHHH-HHHHHHHHTTCEEEECCT
T ss_pred CCCCeEEEe-C--------CceecHHHHHHHHHHHHHHHHHcCCCCCCEEEEEeCCCHHHH-HHHHHHHHhCCEEEEeCC
Confidence 567777763 1 2368888775443 33344568999999998887765533 446789999999999987
Q ss_pred CCChhhHHHHHHHcCCeEEeecHHHHHHH
Q 006121 431 SPLERSFGKFVQDAGVTVLGTVPSLVKAW 459 (660)
Q Consensus 431 ~~~~~~l~~~i~~~~vt~l~~~P~~l~~l 459 (660)
....+++...++..++..++..+.....+
T Consensus 122 ~~~~~~l~~il~~~~~~~li~~~~~~~~~ 150 (563)
T 1amu_A 122 EYPKERIQYILDDSQARMLLTQKHLVHLI 150 (563)
T ss_dssp TSCHHHHHHHHHHHTCSEEEECGGGHHHH
T ss_pred CCcHHHHHHHHHhcCCCEEEEcCchhhhh
Confidence 77788999999999999999887655443
No 61
>1ry2_A Acetyl-coenzyme A synthetase 1, acyl-activating enzyme 1; AMP forming, related to firefly luciferase, ligase; HET: AMP; 2.30A {Saccharomyces cerevisiae} SCOP: e.23.1.1
Probab=71.40 E-value=19 Score=39.81 Aligned_cols=97 Identities=13% Similarity=0.041 Sum_probs=72.2
Q ss_pred CCCCeEEEEecCCCCCCcceEEecchhhHHH---HHHhhH-hcCCCCCCEEEEecCccccchhhHHHHhhhcCcEEEEec
Q 006121 354 PVDAVVNILFSSGTTGEPKAIPWTQLSSIRC---TAEGWA-HIDLKVGDVYCWPTNLGWVMGPVILFSSFLNGATLALYQ 429 (660)
Q Consensus 354 ~~~~~a~i~~TSGSTG~PKgV~~sh~~l~~~---~~~~~~-~~~~~~~~~~l~~~~~~~~~~~~~~~~~l~~G~~lv~~~ 429 (660)
.|+.+|++... ..+| .+..+|.+.+... ++.... ..++.++|++..+++.+...- ..+++++..|+..+.++
T Consensus 95 ~pd~~Al~~~~-~~~~--~~~~~TY~eL~~~v~~lA~~L~~~~Gv~~Gd~V~i~~~~~~e~v-~a~lA~~~~Gav~vpl~ 170 (663)
T 1ry2_A 95 TPNKKAIIFEG-DEPG--QGYSITYKELLEEVCQVAQVLTYSMGVRKGDTVAVYMPMVPEAI-ITLLAISRIGAIHSVVF 170 (663)
T ss_dssp CTTSEEEEEEC-SSTT--CCEEEEHHHHHHHHHHHHHHHHHTSCCCTTCEEEECCCSSHHHH-HHHHHHHHTTCEEEECC
T ss_pred CCCceEEEEEc-CCCC--ceEEEEHHHHHHHHHHHHHHHHHhcCCCCCCEEEEEcCCCHHHH-HHHHHHHHcCCEEEeeC
Confidence 46778877542 2222 2356888877543 344444 678999999999988876543 44678999999999998
Q ss_pred CCCChhhHHHHHHHcCCeEEeecHH
Q 006121 430 GSPLERSFGKFVQDAGVTVLGTVPS 454 (660)
Q Consensus 430 ~~~~~~~l~~~i~~~~vt~l~~~P~ 454 (660)
....++++...|++.++.++++...
T Consensus 171 ~~~~~~~l~~~l~~~~~~~li~~~~ 195 (663)
T 1ry2_A 171 AGFSSNSLRDRINDGDSKVVITTDE 195 (663)
T ss_dssp TTSCHHHHHHHHHHHTCSEEEEESB
T ss_pred CCCCHHHHHHHHHhcCCeEEEEccc
Confidence 7788899999999999999988654
No 62
>3etc_A AMP-binding protein; adenylate-forming acyl-COA synthetase ligase, ligase; HET: PGE 1PE EPE; 2.10A {Methanosarcina acetivorans}
Probab=70.60 E-value=22 Score=38.62 Aligned_cols=95 Identities=12% Similarity=0.048 Sum_probs=71.5
Q ss_pred CCCCeEEEEecCCCCCCcceEEecchhhHHH---HHHhhHhcCCCCCCEEEEecCccccchhhHHHHhhhcCcEEEEecC
Q 006121 354 PVDAVVNILFSSGTTGEPKAIPWTQLSSIRC---TAEGWAHIDLKVGDVYCWPTNLGWVMGPVILFSSFLNGATLALYQG 430 (660)
Q Consensus 354 ~~~~~a~i~~TSGSTG~PKgV~~sh~~l~~~---~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~l~~G~~lv~~~~ 430 (660)
.|+.+|++.... .| ....+|.+.+... ++......++.++|++...++-+.... ..+++++..|+..+.++.
T Consensus 69 ~pd~~Al~~~~~--~g--~~~~~Ty~eL~~~~~~~A~~L~~~Gv~~Gd~V~l~~~~~~e~~-~~~lA~~~~Gav~vpl~~ 143 (580)
T 3etc_A 69 SPEKLAMIWCDD--YG--NEKIFTFKDLKYYSDKAANFFVKHGIGKGDYVMLTLKSRYDFW-YCMLGLHKLGAIAVPATH 143 (580)
T ss_dssp CTTCEEEEEEES--SS--CEEEEEHHHHHHHHHHHHHHHHHTTCCTTCEEEEECTTCTHHH-HHHHHHHHHTCEEEECCT
T ss_pred CCCCEEEEEEcC--CC--CEeEEeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEcCCCHHHH-HHHHHHHhCCEEEEeCCc
Confidence 678888876532 12 3467888877543 444445578999999998888775533 446788999999999887
Q ss_pred CCChhhHHHHHHHcCCeEEeecH
Q 006121 431 SPLERSFGKFVQDAGVTVLGTVP 453 (660)
Q Consensus 431 ~~~~~~l~~~i~~~~vt~l~~~P 453 (660)
...++++...+++.++..+.+.+
T Consensus 144 ~~~~~~l~~~l~~~~~~~ii~~~ 166 (580)
T 3etc_A 144 MLKTRDIVYRIEKAGLKMIVCIA 166 (580)
T ss_dssp TCCHHHHHHHHHHHTCCEEEEES
T ss_pred cCCHHHHHHHHHhcCCCEEEEec
Confidence 77888999999999999988754
No 63
>4fuq_A Malonyl COA synthetase; ANL superfamily, methylma malonate, ligase; HET: MSE; 1.70A {Rhodopseudomonas palustris} PDB: 4fut_A* 4gxr_A* 4gxq_A*
Probab=69.43 E-value=18 Score=38.35 Aligned_cols=81 Identities=16% Similarity=0.095 Sum_probs=62.9
Q ss_pred EEecchhhHHHH---HHhhHhcCCCCCCEEEEecCccccchhhHHHHhhhcCcEEEEecCCCChhhHHHHHHHcCCeEEe
Q 006121 374 IPWTQLSSIRCT---AEGWAHIDLKVGDVYCWPTNLGWVMGPVILFSSFLNGATLALYQGSPLERSFGKFVQDAGVTVLG 450 (660)
Q Consensus 374 V~~sh~~l~~~~---~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~l~~G~~lv~~~~~~~~~~l~~~i~~~~vt~l~ 450 (660)
-.+|.+.+...+ .......++.++|++...++-+... +..+++++..|+..+.++.....+++...+++.++..+.
T Consensus 27 ~~~Ty~eL~~~~~~lA~~L~~~Gv~~gd~V~i~~~~~~~~-~~~~lA~~~~Ga~~vpl~~~~~~~~l~~il~~~~~~~vi 105 (503)
T 4fuq_A 27 DKISYAELVARAGRVANVLVARGLQVGDRVAAQTEKSVEA-LVLYLATVRAGGVYLPLNTAYTLHELDYFITDAEPKIVV 105 (503)
T ss_dssp CEEEHHHHHHHHHHHHHHHHHTTCCTTCEEEEECCSCHHH-HHHHHHHHHTTCEEEECCTTCCHHHHHHHHHHHCCSEEE
T ss_pred cEEEHHHHHHHHHHHHHHHHHcCCCCCCEEEEECCCCHHH-HHHHHHHHHcCcEEEecCCCCCHHHHHHHHHhcCCcEEE
Confidence 358888875443 3444456899999999888877553 344778999999999998777888999999999999998
Q ss_pred ecHHH
Q 006121 451 TVPSL 455 (660)
Q Consensus 451 ~~P~~ 455 (660)
+.+..
T Consensus 106 ~~~~~ 110 (503)
T 4fuq_A 106 CDPSK 110 (503)
T ss_dssp ECGGG
T ss_pred ECchh
Confidence 87653
No 64
>1mdb_A 2,3-dihydroxybenzoate-AMP ligase; adenylation domain, peptide synthetase, antibiotic biosynthesis, siderophore formation; HET: AMP DBH; 2.15A {Bacillus subtilis} SCOP: e.23.1.1 PDB: 1md9_A* 1mdf_A
Probab=69.42 E-value=33 Score=36.72 Aligned_cols=90 Identities=14% Similarity=0.048 Sum_probs=67.1
Q ss_pred CCCCeEEEEecCCCCCCcceEEecchhhHHHH---HHhhHhcCCCCCCEEEEecCccccchhhHHHHhhhcCcEEEEecC
Q 006121 354 PVDAVVNILFSSGTTGEPKAIPWTQLSSIRCT---AEGWAHIDLKVGDVYCWPTNLGWVMGPVILFSSFLNGATLALYQG 430 (660)
Q Consensus 354 ~~~~~a~i~~TSGSTG~PKgV~~sh~~l~~~~---~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~l~~G~~lv~~~~ 430 (660)
.|+.+|++. + +..+|.+.+...+ .......++.++|++...++-+...- ..+++++..|+..+..+.
T Consensus 38 ~p~~~A~~~---~------~~~~Ty~eL~~~~~~lA~~L~~~Gv~~gd~V~i~~~~~~~~~-~~~lA~~~~Ga~~vpl~~ 107 (539)
T 1mdb_A 38 YGDRIAITC---G------NTHWSYRELDTRADRLAAGFQKLGIQQKDRVVVQLPNIKEFF-EVIFALFRLGALPVFALP 107 (539)
T ss_dssp HTTSEEEEE---T------TEEEEHHHHHHHHHHHHHHHHHHTCCTTCEEEECCCSSHHHH-HHHHHHHHHTCEEEECCT
T ss_pred CCCCEEEEe---C------CCcccHHHHHHHHHHHHHHHHHcCCCCCCEEEEEcCCcHHHH-HHHHHHHHcCeEEecCCC
Confidence 467777763 1 2468888775443 33344568999999998887765533 446789999999998887
Q ss_pred CCChhhHHHHHHHcCCeEEeecH
Q 006121 431 SPLERSFGKFVQDAGVTVLGTVP 453 (660)
Q Consensus 431 ~~~~~~l~~~i~~~~vt~l~~~P 453 (660)
....+++...++..++..+...+
T Consensus 108 ~~~~~~l~~~l~~~~~~~vi~~~ 130 (539)
T 1mdb_A 108 SHRSSEITYFCEFAEAAAYIIPD 130 (539)
T ss_dssp TCCHHHHHHHHHHTTCSEEEEES
T ss_pred CCCHHHHHHHHHhCCCCEEEecc
Confidence 77788999999999999988765
No 65
>4gr5_A Non-ribosomal peptide synthetase; MBTH-like domain, adenylation domain, ligase, rossmann fold, binding; HET: APC TLA; 1.92A {Streptomyces lydicus} PDB: 4gr4_A
Probab=67.09 E-value=24 Score=38.09 Aligned_cols=92 Identities=18% Similarity=0.135 Sum_probs=69.4
Q ss_pred CCCCeEEEEecCCCCCCcceEEecchhhHHHH---HHhhHhcCCCCCCEEEEecCccccchhhHHHHhhhcCcEEEEecC
Q 006121 354 PVDAVVNILFSSGTTGEPKAIPWTQLSSIRCT---AEGWAHIDLKVGDVYCWPTNLGWVMGPVILFSSFLNGATLALYQG 430 (660)
Q Consensus 354 ~~~~~a~i~~TSGSTG~PKgV~~sh~~l~~~~---~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~l~~G~~lv~~~~ 430 (660)
.|+.+|++. .+-.+|.+.+...+ +......++.++|++...++-+...- ..+++++..|+..+.++.
T Consensus 88 ~pd~~A~~~---------~~~~~Ty~el~~~~~~lA~~L~~~Gv~~gd~V~i~~~n~~~~~-~~~lA~~~~G~~~vpl~~ 157 (570)
T 4gr5_A 88 APDAVALLH---------EADELTYGALNERANRLAHRLVGLGVAPGTLVGVHLERGFDMV-VALLAVLKAGGGYTMLDP 157 (570)
T ss_dssp CTTSEEEEE---------TTEEEEHHHHHHHHHHHHHHHHHTTCCTTCEEEEECCSSHHHH-HHHHHHHHTTCEEEECCT
T ss_pred CCCCeEEEC---------CCCcEeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEeCCCHHHH-HHHHHHHHHCCEEEEcCC
Confidence 567788763 12358888775443 34444568999999998887776533 446789999999999987
Q ss_pred CCChhhHHHHHHHcCCeEEeecHHH
Q 006121 431 SPLERSFGKFVQDAGVTVLGTVPSL 455 (660)
Q Consensus 431 ~~~~~~l~~~i~~~~vt~l~~~P~~ 455 (660)
....+++...++..++..+......
T Consensus 158 ~~~~~~l~~~l~~~~~~~~i~~~~~ 182 (570)
T 4gr5_A 158 QFPVERLALSLEDTGAPLLVTSRPL 182 (570)
T ss_dssp TSCHHHHHHHHHHHTCSEEEECTTT
T ss_pred CChHHHHHHHHHhcCCCEEEecchh
Confidence 7788899999999999998876543
No 66
>1pg4_A Acetyl-COA synthetase; AMP-forming, adenylate-forming, thioester-forming, ligase; HET: COA PRX; 1.75A {Salmonella enterica} SCOP: e.23.1.1 PDB: 1pg3_A* 2p2f_A* 2p2b_A* 2p2q_A* 2p2j_A* 2p20_A* 2p2m_A*
Probab=67.08 E-value=27 Score=38.49 Aligned_cols=96 Identities=16% Similarity=0.059 Sum_probs=70.9
Q ss_pred CCCCeEEEEecCCCCCCcceEEecchhhHHHH---HHhhHhcCCCCCCEEEEecCccccchhhHHHHhhhcCcEEEEecC
Q 006121 354 PVDAVVNILFSSGTTGEPKAIPWTQLSSIRCT---AEGWAHIDLKVGDVYCWPTNLGWVMGPVILFSSFLNGATLALYQG 430 (660)
Q Consensus 354 ~~~~~a~i~~TSGSTG~PKgV~~sh~~l~~~~---~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~l~~G~~lv~~~~ 430 (660)
.|+.+|++... ..+| .+-.+|.+.+...+ +......++.++|++..+++-+... +..+++++..|+..+.++.
T Consensus 89 ~pd~~Al~~~~-~~~~--~~~~lTY~eL~~~v~~lA~~L~~~Gv~~Gd~V~i~~~~~~e~-vva~lA~~~~Gav~vpl~~ 164 (652)
T 1pg4_A 89 NGDRTAIIWEG-DDTS--QSKHISYRELHRDVCRFANTLLDLGIKKGDVVAIYMPMVPEA-AVAMLACARIGAVHSVIFG 164 (652)
T ss_dssp HTTSEEEEEEC-SSTT--CEEEEEHHHHHHHHHHHHHHHHHHTCCTTCEEEEECCSSHHH-HHHHHHHHHHTCEEEECCT
T ss_pred CCCceEEEEEc-CCCC--ceeEEeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEeCCCHHH-HHHHHHHHHcCcEEEecCC
Confidence 46778877432 2222 24568888875443 3444456899999999998887654 3456789999999999987
Q ss_pred CCChhhHHHHHHHcCCeEEeecH
Q 006121 431 SPLERSFGKFVQDAGVTVLGTVP 453 (660)
Q Consensus 431 ~~~~~~l~~~i~~~~vt~l~~~P 453 (660)
...++++...|++.++.++++..
T Consensus 165 ~~~~~~l~~~l~~~~~~~li~~~ 187 (652)
T 1pg4_A 165 GFSPEAVAGCIIDSSSRLVITAD 187 (652)
T ss_dssp TSCHHHHHHHHHHHTCSEEEEES
T ss_pred CCCHHHHHHHHHhcCCCEEEEcC
Confidence 77889999999999999888754
No 67
>3kxw_A Saframycin MX1 synthetase B; fatty acid AMP ligase, SGX, acyl adenylate, structural genom 2, protein structure initiative; HET: 1ZZ; 1.85A {Legionella pneumophila subsp} PDB: 3lnv_A*
Probab=66.83 E-value=36 Score=36.74 Aligned_cols=101 Identities=10% Similarity=0.027 Sum_probs=73.6
Q ss_pred CCCCeEEEEecCCCCCCcceEEecchhhHHHH---HHhhHhcCCCCCCEEEEecCccccchhhHHHHhhhcCcEEEEecC
Q 006121 354 PVDAVVNILFSSGTTGEPKAIPWTQLSSIRCT---AEGWAHIDLKVGDVYCWPTNLGWVMGPVILFSSFLNGATLALYQG 430 (660)
Q Consensus 354 ~~~~~a~i~~TSGSTG~PKgV~~sh~~l~~~~---~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~l~~G~~lv~~~~ 430 (660)
.|+.+|++....+ .+-.+|.+.+...+ .......++.++|++...++-+... +..+|+++..|+..+.++.
T Consensus 24 ~p~~~a~~~~~~~-----~~~~~Ty~eL~~~~~~lA~~L~~~gv~~gd~V~i~~~~~~~~-~~~~lA~~~~G~~~vpl~~ 97 (590)
T 3kxw_A 24 SPNKKSCTFLNKE-----LEETMTYEQLDQHAKAIAATLQAEGAKPGDRVLLLFAPGLPL-IQAFLGCLYAGCIAVPIYP 97 (590)
T ss_dssp CTTSEEEEEEETT-----EEEEEEHHHHHHHHHHHHHHHHHTTCCTTCEEEEECCSSHHH-HHHHHHHHHTTCEEEEECC
T ss_pred CCCCeEEEEEcCC-----eeEEEcHHHHHHHHHHHHHHHHHcCCCCCCEEEEEcCCchhH-HHHHHHHHHhCcEEEEecC
Confidence 5688887765411 24578888875443 4444556899999999888877653 3446789999999998875
Q ss_pred CC---ChhhHHHHHHHcCCeEEeecHHHHHHHH
Q 006121 431 SP---LERSFGKFVQDAGVTVLGTVPSLVKAWR 460 (660)
Q Consensus 431 ~~---~~~~l~~~i~~~~vt~l~~~P~~l~~l~ 460 (660)
.. ..+++...++..++..+...+.....+.
T Consensus 98 ~~~~~~~~~~~~~l~~~~~~~vi~~~~~~~~~~ 130 (590)
T 3kxw_A 98 PAQEKLLDKAQRIVTNSKPVIVLMIADHIKKFT 130 (590)
T ss_dssp CCSHHHHHHHHHHHHHHCCSEEEECHHHHHHHC
T ss_pred CCchHHHHHHHHHHHhCCCCEEEeCHHHHHHHH
Confidence 43 2457888899999999999888777654
No 68
>3hgu_A EHPF; phenazine, antibiotic, biosynthetic protein; 1.95A {Pantoea agglomerans} PDB: 3hgv_A 3l2k_A*
Probab=66.68 E-value=25 Score=35.45 Aligned_cols=98 Identities=10% Similarity=0.046 Sum_probs=65.9
Q ss_pred CCCcEEEEEecCCCCCCC--ceeecHHHHHHHHHHHHHHHHhc-cCCCCEEEEEcCCC--HHHHHHHHHHHHcCcEEEec
Q 006121 189 EDNTVAIVWREDRCDESA--VNLMTYKELREQVMLVANALDTM-FSKGDAIAIDMPMT--VRAVIIYLAIILAGYVVVSI 263 (660)
Q Consensus 189 ~pd~~Av~~~~~~~~~~~--~~~lTY~eL~~~a~~lA~~L~~~-v~~gd~V~i~~~~s--~~~vva~lA~lkaGa~~vpl 263 (660)
.++.+|.+....+ .++. ...+|.+.+...+..+++.+... +.++|++..++|-+ .--+...++++..|+..++.
T Consensus 89 ~~~~~a~i~~TSG-TTG~PKgv~~t~~~~~~~~~~~~~~~~~~~~~~~d~~l~~~p~g~~~~g~~~~~~~~~~G~~v~~~ 167 (369)
T 3hgu_A 89 PADSHPQVYESGG-TTGAPKYVVAYDAWIEALISWRMSGYQHRPGRPSGNTLAAIPTGPHIVGAINKERALRLGGMFFSI 167 (369)
T ss_dssp CTTCCCEEEEECC----CCEEEEECHHHHHHHHHHHTTTTTTSTTCCCCEEEECSCCTTCHHHHHHHHHHHHTTSCEECC
T ss_pred CccccEEEEECCC-CCCCCCEEEECHHHHHHHHHHHHhhHHhhCCCCcceEEEecCCCchhhhHHHHHHHHHcCCEEECc
Confidence 4566665544332 2333 34578888888887777777777 99999999998862 22334445558999966654
Q ss_pred CCCCCHH-----------------------HHHHHHHhcCeeEEEeecc
Q 006121 264 ADSFAAR-----------------------EIATRLRVSKAKGIFTQDF 289 (660)
Q Consensus 264 ~p~~p~~-----------------------~l~~~l~~~~~~~il~~~~ 289 (660)
+ +.+. ++...+++.++.++++...
T Consensus 168 ~--~dp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~t~l~~~Ps 214 (369)
T 3hgu_A 168 D--IDPRWVKRSLSEGDTATVRKYTHHLVDQVQNTLMNQDIRFLVTTPP 214 (369)
T ss_dssp C--CCHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHSCEEEEEECHH
T ss_pred c--CChHHHHHhhcccchhhhHHHHHHHHHHHHHHHHhCCCCEEEeCHH
Confidence 3 3444 6666899999999988764
No 69
>3o83_A Peptide arylation enzyme; ligase, adenylation of 2,3-dihydroxybenzoate and transfer to pantetheine cofactor of BASF; HET: IXN; 1.90A {Acinetobacter baumannii} SCOP: e.23.1.0 PDB: 3o82_A* 3o84_A* 3u16_A* 3u17_A*
Probab=65.53 E-value=25 Score=37.74 Aligned_cols=90 Identities=14% Similarity=0.046 Sum_probs=67.9
Q ss_pred CCCCeEEEEecCCCCCCcceEEecchhhHHH---HHHhhHhcCCCCCCEEEEecCccccchhhHHHHhhhcCcEEEEecC
Q 006121 354 PVDAVVNILFSSGTTGEPKAIPWTQLSSIRC---TAEGWAHIDLKVGDVYCWPTNLGWVMGPVILFSSFLNGATLALYQG 430 (660)
Q Consensus 354 ~~~~~a~i~~TSGSTG~PKgV~~sh~~l~~~---~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~l~~G~~lv~~~~ 430 (660)
.|+.+|++. + +-.+|.+.+... +.......++.++|++...++-+...- ..+|+++..|+..+.++.
T Consensus 43 ~p~~~Al~~---~------~~~~Ty~eL~~~~~~lA~~L~~~Gv~~gd~V~i~~~n~~~~~-~~~lA~~~~Gav~vpl~~ 112 (544)
T 3o83_A 43 HPHSLAIIC---G------ERQLSYIELDRLSTNLATRLAEKGLGKGDTALVQLPNVAEFY-IVFFALLKAGVVVLNALY 112 (544)
T ss_dssp CTTSEEEEE---T------TEEEEHHHHHHHHHHHHHHHHHTTCCTTCEEEECCCSSHHHH-HHHHHHHHHTCEEEECCT
T ss_pred CCCceEEEc---C------CCceeHHHHHHHHHHHHHHHHHCCCCCCCEEEEECCCCHHHH-HHHHHHHHhCcEEecCCC
Confidence 578888763 1 346888887544 344445568999999998887765533 446789999999888876
Q ss_pred CCChhhHHHHHHHcCCeEEeecH
Q 006121 431 SPLERSFGKFVQDAGVTVLGTVP 453 (660)
Q Consensus 431 ~~~~~~l~~~i~~~~vt~l~~~P 453 (660)
....+++...+++.++.++...+
T Consensus 113 ~~~~~~l~~~l~~~~~~~li~~~ 135 (544)
T 3o83_A 113 SHRQYELNAFIKQIQPKLLIGSR 135 (544)
T ss_dssp TCCHHHHHHHHHHHCCSEEEEET
T ss_pred CCCHHHHHHHHHhcCeeEEEEcc
Confidence 67788999999999999988765
No 70
>2d1s_A Luciferase, luciferin 4-monooxygenase; alpha/beta, beta barrel, alpha+beta, riken structural genomics/proteomics initiative, RSGI; HET: SLU; 1.30A {Luciola cruciata} PDB: 2d1q_A* 2d1r_A* 2d1t_A*
Probab=60.14 E-value=26 Score=37.67 Aligned_cols=85 Identities=7% Similarity=-0.033 Sum_probs=65.4
Q ss_pred EEecchhhHHHHH---HhhHhcCCCCCCEEEEecCccccchhhHHHHhhhcCcEEEEecCCCChhhHHHHHHHcCCeEEe
Q 006121 374 IPWTQLSSIRCTA---EGWAHIDLKVGDVYCWPTNLGWVMGPVILFSSFLNGATLALYQGSPLERSFGKFVQDAGVTVLG 450 (660)
Q Consensus 374 V~~sh~~l~~~~~---~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~l~~G~~lv~~~~~~~~~~l~~~i~~~~vt~l~ 450 (660)
..+|++.+...+. ......++.++|++...++-+...- ..+++++..|+..+..+.....+++...++..++.+++
T Consensus 51 ~~~Ty~el~~~~~~lA~~L~~~Gv~~gd~V~i~~~n~~e~~-~~~la~~~~Gav~vpl~~~~~~~~l~~~l~~~~~~~vi 129 (548)
T 2d1s_A 51 VDYSYAEYLEKSCCLGKALQNYGLVVDGRIALCSENCEEFF-IPVIAGLFIGVGVAPTNEIYTLRELVHSLGISKPTIVF 129 (548)
T ss_dssp CEEEHHHHHHHHHHHHHHHHHHTCCTTCEEEEECSSCTTTH-HHHHHHHHHTCEEEEECTTSCHHHHHHHHHHHCCSEEE
T ss_pred CEeeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEeCCchhHH-HHHHHHHhhCCEEeccCCCCCHHHHHHHHHhcCCeEEE
Confidence 4588887755443 3334468999999998888776543 44678999999999998777788999999999999999
Q ss_pred ecHHHHHHH
Q 006121 451 TVPSLVKAW 459 (660)
Q Consensus 451 ~~P~~l~~l 459 (660)
+.+.....+
T Consensus 130 ~~~~~~~~~ 138 (548)
T 2d1s_A 130 SSKKGLDKV 138 (548)
T ss_dssp ECTTTHHHH
T ss_pred EcHHHHHHH
Confidence 877655443
No 71
>3l8c_A D-alanine--poly(phosphoribitol) ligase subunit 1; structural genomics, DLTA, ATP-binding, cytoplasm, nucleotide-binding; 2.41A {Streptococcus pyogenes serotype M6} PDB: 3lgx_A*
Probab=59.91 E-value=30 Score=36.74 Aligned_cols=90 Identities=10% Similarity=-0.104 Sum_probs=66.0
Q ss_pred CCCCeEEEEecCCCCCCcceEEecchhhHHHH---HHhhHhcCCCCCCEEEEecCccccchhhHHHHhhhcCcEEEEecC
Q 006121 354 PVDAVVNILFSSGTTGEPKAIPWTQLSSIRCT---AEGWAHIDLKVGDVYCWPTNLGWVMGPVILFSSFLNGATLALYQG 430 (660)
Q Consensus 354 ~~~~~a~i~~TSGSTG~PKgV~~sh~~l~~~~---~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~l~~G~~lv~~~~ 430 (660)
.|+.+|++. .+-.+|.+.+...+ .......++.++|++...++-+... +..+|+++..|+..+.++.
T Consensus 17 ~p~~~a~~~---------~~~~~Ty~el~~~~~~lA~~L~~~g~~~gd~V~i~~~n~~~~-~~~~lA~~~~G~v~vpl~~ 86 (521)
T 3l8c_A 17 QADFPVYDC---------LGERRTYGQLKRDSDSIAAFIDSLALLAKSPVLVFGAQTYDM-LATFVALTKSGHAYIPVDV 86 (521)
T ss_dssp STTSEEEEE---------TTEEEEHHHHHHHHHHHHHHHHHTCCCTTCCEEEEECSSHHH-HHHHHHHHHTTCCEEEEET
T ss_pred CCCCcceec---------CCCeecHHHHHHHHHHHHHHHHHcCCCCCCEEEEEeCCCHHH-HHHHHHHHHhCCEEEecCc
Confidence 456677653 12357888875444 3444556899999998887766543 3446789999999999987
Q ss_pred CCChhhHHHHHHHcCCeEEeecH
Q 006121 431 SPLERSFGKFVQDAGVTVLGTVP 453 (660)
Q Consensus 431 ~~~~~~l~~~i~~~~vt~l~~~P 453 (660)
...++++..+++..++..+....
T Consensus 87 ~~~~~~l~~il~~~~~~~ii~~~ 109 (521)
T 3l8c_A 87 HSAPERILAIIEIAKPSLIIAIE 109 (521)
T ss_dssp TSCHHHHHHHHHHSCCSEEEESS
T ss_pred cccHHHHHHHHHhCCCCEEEecC
Confidence 77888999999999999887653
No 72
>3fce_A D-alanine--poly(phosphoribitol) ligase subunit 1; DLTA, AMP-forming domain, adenylation, D-alanine protein ligase, ATP complex; HET: ATP; 1.90A {Bacillus cereus} PDB: 3fcc_A* 3dhv_A*
Probab=58.44 E-value=31 Score=36.49 Aligned_cols=89 Identities=8% Similarity=-0.084 Sum_probs=65.2
Q ss_pred CCCCeEEEEecCCCCCCcceEEecchhhHHHHH---HhhHhcCCCCCCEEEEecCccccchhhHHHHhhhcCcEEEEecC
Q 006121 354 PVDAVVNILFSSGTTGEPKAIPWTQLSSIRCTA---EGWAHIDLKVGDVYCWPTNLGWVMGPVILFSSFLNGATLALYQG 430 (660)
Q Consensus 354 ~~~~~a~i~~TSGSTG~PKgV~~sh~~l~~~~~---~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~l~~G~~lv~~~~ 430 (660)
.|+.+|++.. +-.+|.+.+...+. ......++.+++++....+-+... +..+|+++..|+..+.++.
T Consensus 14 ~p~~~A~~~~---------~~~~Ty~el~~~~~~lA~~L~~~g~~~gd~V~i~~~n~~e~-~~~~la~~~~G~v~vpl~~ 83 (512)
T 3fce_A 14 TPDQTAFVWR---------DAKITYKQLKEDSDALAHWISSEYPDDRSPIMVYGHMQPEM-IINFLGCVKAGHAYIPVDL 83 (512)
T ss_dssp STTSEEEEET---------TEEEEHHHHHHHHHHHHHHHHHHSTTCCCCEEEEESSCHHH-HHHHHHHHHTTCCEEEEET
T ss_pred CCCceEEEeC---------CceEEHHHHHHHHHHHHHHHHHhCCCCCCEEEEEeCCCHHH-HHHHHHHHHhCCEEEeeCC
Confidence 4677777631 13578887754443 334445889999998877766543 3457789999999999987
Q ss_pred CCChhhHHHHHHHcCCeEEeec
Q 006121 431 SPLERSFGKFVQDAGVTVLGTV 452 (660)
Q Consensus 431 ~~~~~~l~~~i~~~~vt~l~~~ 452 (660)
....+++...++..++..+...
T Consensus 84 ~~~~~~l~~il~~~~~~~~i~~ 105 (512)
T 3fce_A 84 SIPADRVQRIAENSGAKLLLSA 105 (512)
T ss_dssp TSCHHHHHHHHHHSCCCEEEES
T ss_pred CCcHHHHHHHHHhcCCCEEEec
Confidence 7778899999999999888764
No 73
>3tsy_A Fusion protein 4-coumarate--COA ligase 1, resvera synthase; transferase; 3.10A {Arabidospis thaliana}
Probab=57.78 E-value=34 Score=39.82 Aligned_cols=96 Identities=15% Similarity=0.049 Sum_probs=71.8
Q ss_pred CCCCCeEEEEecCCCCCCcceEEecchhhHHH---HHHhhHhcCCCCCCEEEEecCccccchhhHHHHhhhcCcEEEEec
Q 006121 353 NPVDAVVNILFSSGTTGEPKAIPWTQLSSIRC---TAEGWAHIDLKVGDVYCWPTNLGWVMGPVILFSSFLNGATLALYQ 429 (660)
Q Consensus 353 ~~~~~~a~i~~TSGSTG~PKgV~~sh~~l~~~---~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~l~~G~~lv~~~ 429 (660)
..|+.+|++. +.+| ..+|.+.+... +.......++.++|++...++-+... +..+++++..|+..+.++
T Consensus 73 ~~pd~~Al~~---~~~~----~~~TY~eL~~~~~~lA~~L~~~Gv~~gd~V~i~~~ns~e~-~v~~lA~~~~Ga~~vpl~ 144 (979)
T 3tsy_A 73 EFATKPCLIN---GPTG----HVYTYSDVHVISRQIAANFHKLGVNQNDVVMLLLPNCPEF-VLSFLAASFRGATATAAN 144 (979)
T ss_dssp GTTTSEEEEE---TTTC----CEEEHHHHHHHHHHHHHHHHHTTCCTTCEEEEECSSCHHH-HHHHHHHHHHTCEEEEEC
T ss_pred hCCCCeEEEE---CCCC----cEEEHHHHHHHHHHHHHHHHHcCCCCcCEEEEEeCCCHHH-HHHHHHHHHcCCEEEeeC
Confidence 3578888764 2222 45788877543 34444557899999999888877543 344679999999999998
Q ss_pred CCCChhhHHHHHHHcCCeEEeecHHHH
Q 006121 430 GSPLERSFGKFVQDAGVTVLGTVPSLV 456 (660)
Q Consensus 430 ~~~~~~~l~~~i~~~~vt~l~~~P~~l 456 (660)
....++++...+++.++.++...+...
T Consensus 145 ~~~~~~~l~~~l~~~~~~~vi~~~~~~ 171 (979)
T 3tsy_A 145 PFFTPAEIAKQAKASNTKLIITEARYV 171 (979)
T ss_dssp TTSCHHHHHHHHHHHTEEEEEECSTTT
T ss_pred CCCCHHHHHHHHHHcCCeEEEEChHHH
Confidence 777888999999999999998876543
No 74
>3ipl_A 2-succinylbenzoate--COA ligase; structural genomics, acyl-protein synthetase, PSI-2, protein structure initiative; 2.30A {Staphylococcus aureus subsp}
Probab=55.78 E-value=33 Score=36.13 Aligned_cols=90 Identities=6% Similarity=-0.054 Sum_probs=66.6
Q ss_pred CCCCeEEEEecCCCCCCcceEEecchhhHHHHHHhhHhcCCCCCCEEEEecCccccchhhHHHHhhhcCcEEEEecCCCC
Q 006121 354 PVDAVVNILFSSGTTGEPKAIPWTQLSSIRCTAEGWAHIDLKVGDVYCWPTNLGWVMGPVILFSSFLNGATLALYQGSPL 433 (660)
Q Consensus 354 ~~~~~a~i~~TSGSTG~PKgV~~sh~~l~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~l~~G~~lv~~~~~~~ 433 (660)
.|+.+|++. + +-.+|++.+...+......+.-.++|++...++-+... +..+++++..|+..+.++....
T Consensus 14 ~pd~~Al~~---~------~~~~Ty~eL~~~~~~lA~~L~~~~gd~V~i~~~n~~e~-~~~~lA~~~~Gav~vpl~~~~~ 83 (501)
T 3ipl_A 14 NGHHIAITD---G------QESYTYQNLYCEASLLAKRLKAYQQSRVGLYIDNSIQS-IILIHACWLANIEIAMINTRLT 83 (501)
T ss_dssp HTTSEEEEC---S------SCEEEHHHHHHHHHHHHHHHHTTCCSEEEEECCSSHHH-HHHHHHHHHTTCEEEECCTTSC
T ss_pred cCCceEEEe---C------CcEEEHHHHHHHHHHHHHHHHHcCCCEEEEEcCCCHHH-HHHHHHHHHcCCEEEecCccCC
Confidence 457777652 1 13688888876665555444333899999888876553 3457789999999999987778
Q ss_pred hhhHHHHHHHcCCeEEeecH
Q 006121 434 ERSFGKFVQDAGVTVLGTVP 453 (660)
Q Consensus 434 ~~~l~~~i~~~~vt~l~~~P 453 (660)
++++...++..++..+.+..
T Consensus 84 ~~~l~~~l~~~~~~~li~~~ 103 (501)
T 3ipl_A 84 PNEMTNQMRSIDVQLIFCTL 103 (501)
T ss_dssp HHHHHHHHHHTTCCEEEESS
T ss_pred HHHHHHHHHhcCCCEEEEcc
Confidence 88999999999999887753
No 75
>4dg8_A PA1221; ANL superfamily, adenylation domain, peptidyl carrier protei ribosomal peptide synthetase, NRPS, valine adenylation, LIG; HET: AMP; 2.15A {Pseudomonas aeruginosa} PDB: 4dg9_A*
Probab=51.04 E-value=60 Score=35.42 Aligned_cols=89 Identities=4% Similarity=-0.158 Sum_probs=66.1
Q ss_pred CCCCeEEEEecCCCCCCcceEEecchhhHHH---HHHhhHhcCCCCCCEEEEecCccccchhhHHHHhhhcCcEEEEecC
Q 006121 354 PVDAVVNILFSSGTTGEPKAIPWTQLSSIRC---TAEGWAHIDLKVGDVYCWPTNLGWVMGPVILFSSFLNGATLALYQG 430 (660)
Q Consensus 354 ~~~~~a~i~~TSGSTG~PKgV~~sh~~l~~~---~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~l~~G~~lv~~~~ 430 (660)
.|+.+|.+. + +-.+|++.+... ++......++.+++++....+-+...- ..+++.+..|+..+.++.
T Consensus 40 ~Pd~~Av~~---~------~~~lTY~eL~~~a~~lA~~L~~~Gv~~g~~V~i~~~~s~~~v-va~lailkaGa~~vpld~ 109 (620)
T 4dg8_A 40 HPHREAIRD---R------FGSVDYRQLLDSAEQLSDYLLEHYPQPGVCLGVYGEYSRESI-TCLLAILLSGHHYLYIDL 109 (620)
T ss_dssp CTTSEEEEE---T------TEEEEHHHHHHHHHHHHHHHHHHCCSSCCEEEEESSSCHHHH-HHHHHHHHTTCEEEECCT
T ss_pred CCCCeEEEc---C------CCcCcHHHHHHHHHHHHHHHHHcCCCCCCEEEEEeCCCHHHH-HHHHHHHHhCCEEEeeCc
Confidence 567788763 1 125888877543 444445568999999998888775533 446789999999999987
Q ss_pred CCChhhHHHHHHHcCCeEEeec
Q 006121 431 SPLERSFGKFVQDAGVTVLGTV 452 (660)
Q Consensus 431 ~~~~~~l~~~i~~~~vt~l~~~ 452 (660)
....+++..++++.++.++...
T Consensus 110 ~~p~~~l~~il~~~~~~~vl~~ 131 (620)
T 4dg8_A 110 KQPAAWNAELCRQVDCRLILDC 131 (620)
T ss_dssp TSCHHHHHHHHHHHTEEEEEEC
T ss_pred cChHHHHHHHHHhCCCcEEEec
Confidence 6677889999999999988744
No 76
>3ite_A SIDN siderophore synthetase; ligase, non-ribosomal peptide synthesis, NRPS, sidna3, fungal, endophyte; HET: MSE; 2.00A {Neotyphodium lolii}
Probab=49.81 E-value=81 Score=33.67 Aligned_cols=97 Identities=13% Similarity=0.079 Sum_probs=66.9
Q ss_pred CCCCeEEEEecCCCCCCcc--eEEecchhhHHHH---HHhhHhcCCCCCCEEEEecCccccchhhHHHHhhhcCcEEEEe
Q 006121 354 PVDAVVNILFSSGTTGEPK--AIPWTQLSSIRCT---AEGWAHIDLKVGDVYCWPTNLGWVMGPVILFSSFLNGATLALY 428 (660)
Q Consensus 354 ~~~~~a~i~~TSGSTG~PK--gV~~sh~~l~~~~---~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~l~~G~~lv~~ 428 (660)
.|+.+|++... |..+..+ .-.+|++.+...+ +......++ ++|++...++-+...- ..+|+++..|+..+.+
T Consensus 33 ~p~~~A~~~~~-~~~~~~~~~~~~~Ty~eL~~~~~~lA~~L~~~g~-~gd~V~i~~~n~~~~~-~~~lA~~~~Gav~vpl 109 (562)
T 3ite_A 33 HPEWKAVEVAT-GFLGSQKIVTEDWTYKKLNETANQVANLIIHASL-HGRAIAVSLDRSLIAF-AIIVGIMKSGNTYVPI 109 (562)
T ss_dssp CTTSEEEEEEE-CC-----CEEEEEEHHHHHHHHHHHHHHHHHTTC-SSCEEEEECCSCHHHH-HHHHHHHHTTCEEEEC
T ss_pred CCCchhhhccc-ccccccccccCCCCHHHHHHHHHHHHHHHHhcCC-CCCEEEEEeCCCHHHH-HHHHHHHHhCCEEEec
Confidence 56788876543 3333332 3568888775443 333344567 7999998887776543 4477899999999999
Q ss_pred cCCCChhhHHHHHHHcCCeEEeecH
Q 006121 429 QGSPLERSFGKFVQDAGVTVLGTVP 453 (660)
Q Consensus 429 ~~~~~~~~l~~~i~~~~vt~l~~~P 453 (660)
+.....+++...++..++..++...
T Consensus 110 ~~~~~~~~l~~~l~~~~~~~~i~~~ 134 (562)
T 3ite_A 110 EAGLPNDRKSFLLRDSRAAMAFVCD 134 (562)
T ss_dssp CTTSCHHHHHHHHHHHTCSEEEECT
T ss_pred CCcCHHHHHHHHHHhcCCCEEEEcc
Confidence 8777788999999999998877653
No 77
>3e7w_A D-alanine--poly(phosphoribitol) ligase subunit 1; DLTA, non-ribosomal peptide synthetase, NRPS, adenylation domain, D-alanylation; HET: AMP; 2.28A {Bacillus subtilis} PDB: 3e7x_A*
Probab=41.77 E-value=1.2e+02 Score=31.88 Aligned_cols=98 Identities=8% Similarity=0.066 Sum_probs=69.5
Q ss_pred CCCCcEEEEEecCCCCCCC--ceeecHHHHHHHHHHHHHHHHhc-cCCCCEEEEEcCCCHHH-HHHHHHHHHcCcEEEec
Q 006121 188 KEDNTVAIVWREDRCDESA--VNLMTYKELREQVMLVANALDTM-FSKGDAIAIDMPMTVRA-VIIYLAIILAGYVVVSI 263 (660)
Q Consensus 188 ~~pd~~Av~~~~~~~~~~~--~~~lTY~eL~~~a~~lA~~L~~~-v~~gd~V~i~~~~s~~~-vva~lA~lkaGa~~vpl 263 (660)
..++.+|++.-..+ .++. ...+|.+.+...+..++. .. +.++|++...+|-+..+ +..+++++..|+..+.+
T Consensus 140 ~~~~~~a~i~~TSG-TTG~PKgV~~sh~~l~~~~~~~~~---~~~~~~~d~~l~~~p~~~~~~~~~~~~~l~~G~~~~~~ 215 (511)
T 3e7w_A 140 VKEHETFYIIYTSG-STGNPKGVQISAANLQSFTDWICA---DFPVSGGKIFLNQAPFSFDLSVMDLYPCLQSGGTLHCV 215 (511)
T ss_dssp CCTTSEEEEEEECC-TTSSCEEEEEEHHHHHHHHHHHHH---HSTTTTTCEEEECSCTTSTHHHHHHHHHHHTTCEEEEC
T ss_pred CCCCCeEEEEECCC-CCCCCCEEEEcHHHHHHHHHHHHH---hcCCCccceEEEeCCccHHHHHHHHHHHHhcCCEEEEc
Confidence 35677777654432 2333 346898888766554433 34 88999999998875433 44578899999998877
Q ss_pred CCC--CCHHHHHHHHHhcCeeEEEeecc
Q 006121 264 ADS--FAAREIATRLRVSKAKGIFTQDF 289 (660)
Q Consensus 264 ~p~--~p~~~l~~~l~~~~~~~il~~~~ 289 (660)
+.. ..++++...+++.++..+.....
T Consensus 216 ~~~~~~~~~~~~~~i~~~~~t~~~~~P~ 243 (511)
T 3e7w_A 216 TKDAVNKPKVLFEELKKSGLNVWTSTPS 243 (511)
T ss_dssp CHHHHHSHHHHHHHHHHHCCSEEEECHH
T ss_pred ChhhhcCHHHHHHHHHHcCCcEEEecHH
Confidence 543 56788889999999999888764
No 78
>3gqw_A Fatty acid AMP ligase; FAAL, E. coli, ATP-dependent binding enzyme family,, structural genomics, PSI-2, protein structure initiative; HET: ZZ9; 3.00A {Escherichia coli O6} PDB: 3pbk_A*
Probab=40.44 E-value=91 Score=33.27 Aligned_cols=86 Identities=8% Similarity=-0.052 Sum_probs=63.6
Q ss_pred eEEecchhhHHHHH---HhhHhcCCCCCCEEEEecCccccchhhHHHHhhhcCcEEEEecCCCC-------hhhHHHHHH
Q 006121 373 AIPWTQLSSIRCTA---EGWAHIDLKVGDVYCWPTNLGWVMGPVILFSSFLNGATLALYQGSPL-------ERSFGKFVQ 442 (660)
Q Consensus 373 gV~~sh~~l~~~~~---~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~l~~G~~lv~~~~~~~-------~~~l~~~i~ 442 (660)
+-.+|.+.+...+. ......++.++|++...++-+...- ..+++++..|+..+.++.... .+++...++
T Consensus 47 ~~~~Ty~eL~~~~~~lA~~L~~~Gv~~gd~V~i~~~~~~~~~-~~~lA~~~~G~~~vpl~~~~~~~~~~~~~~~l~~~l~ 125 (576)
T 3gqw_A 47 EDQLEYQTLKARAEAGAKRLLSLNLKKGDRVALIAETSSEFV-EAFFACQYAGLVAVPLAIPMGVGQRDSWSAKLQGLLA 125 (576)
T ss_dssp EEEEEHHHHHHHHHHHHHHHHHTCCCTTCEEEEECCSSHHHH-HHHHHHHHTTCEEEEECCCSSSSSHHHHHHHHHHHHH
T ss_pred eeEEcHHHHHHHHHHHHHHHHHcCCCCCCEEEEEcCCcHHHH-HHHHHHHHhCCeEeecCCCCcccchhhHHHHHHHHHH
Confidence 35788888755443 3444568999999999888776533 446789999999998875443 567888999
Q ss_pred HcCCeEEeecHHHHHHH
Q 006121 443 DAGVTVLGTVPSLVKAW 459 (660)
Q Consensus 443 ~~~vt~l~~~P~~l~~l 459 (660)
..++..+.........+
T Consensus 126 ~~~~~~ii~~~~~~~~~ 142 (576)
T 3gqw_A 126 SCQPAAIITGDEWLPLV 142 (576)
T ss_dssp HHCCSEEEECGGGHHHH
T ss_pred hcCCCEEEecHHHHHHH
Confidence 99999998877655443
No 79
>3rg2_A Enterobactin synthase component E (ENTE), 2,3-DIH dihydroxybenzoate synthetase, isochroismatase...; adenylate-forming enzymes, ANL superfamily; HET: SVS PNS; 3.10A {Escherichia coli}
Probab=38.92 E-value=78 Score=34.35 Aligned_cols=89 Identities=12% Similarity=0.009 Sum_probs=66.7
Q ss_pred CCCeEEEEecCCCCCCcceEEecchhhHH---HHHHhhHhcCCCCCCEEEEecCccccchhhHHHHhhhcCcEEEEecCC
Q 006121 355 VDAVVNILFSSGTTGEPKAIPWTQLSSIR---CTAEGWAHIDLKVGDVYCWPTNLGWVMGPVILFSSFLNGATLALYQGS 431 (660)
Q Consensus 355 ~~~~a~i~~TSGSTG~PKgV~~sh~~l~~---~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~l~~G~~lv~~~~~ 431 (660)
|+.+|.+- | +-.+|.+.+.. .++......++.+++++....+-+...- ..+++++..|+..+..+..
T Consensus 39 pd~~Av~~---~------~~~lTY~eL~~~a~~lA~~L~~~Gv~~gd~V~l~~~~s~~~v-va~lA~l~aG~~~vpl~~~ 108 (617)
T 3rg2_A 39 SDSIAVID---G------ERQLSYRELNQAADNLACSLRRQGIKPGETALVQLGNVAELY-ITFFALLKLGVAPVLALFS 108 (617)
T ss_dssp CCSEEEEE---T------TEEEEHHHHHHHHHHHHHHHHHTTCCTTCEEEEECCSSHHHH-HHHHHHHHHTCEEEEECTT
T ss_pred CCCeEEec---C------CceEeHHHHHHHHHHHHHHHHHcCCCCCCEEEEECCCcHHHH-HHHHHHHhcCeEEccCCcc
Confidence 67777762 1 24588887754 3444445568999999998888765533 4467999999999988876
Q ss_pred CChhhHHHHHHHcCCeEEeecH
Q 006121 432 PLERSFGKFVQDAGVTVLGTVP 453 (660)
Q Consensus 432 ~~~~~l~~~i~~~~vt~l~~~P 453 (660)
...+++...++..++..+....
T Consensus 109 ~~~~~l~~~l~~~~~~~vl~~~ 130 (617)
T 3rg2_A 109 HQRSELNAYASQIEPALLIADR 130 (617)
T ss_dssp CCHHHHHHHHHHHCCSEEEEET
T ss_pred ccHHHHHHHHhhcCceEEEecc
Confidence 6778899999999999888764
No 80
>2vsq_A Surfactin synthetase subunit 3; ligase, peptidyl carrier protein, ligase phosphoprotein, TER module, phosphopantetheine; 2.60A {Bacillus subtilis}
Probab=32.86 E-value=1.1e+02 Score=36.90 Aligned_cols=92 Identities=13% Similarity=0.038 Sum_probs=68.3
Q ss_pred CCCCeEEEEecCCCCCCcceEEecchhhHH---HHHHhhHhcCCCCCCEEEEecCccccchhhHHHHhhhcCcEEEEecC
Q 006121 354 PVDAVVNILFSSGTTGEPKAIPWTQLSSIR---CTAEGWAHIDLKVGDVYCWPTNLGWVMGPVILFSSFLNGATLALYQG 430 (660)
Q Consensus 354 ~~~~~a~i~~TSGSTG~PKgV~~sh~~l~~---~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~l~~G~~lv~~~~ 430 (660)
.|+.+|.+ + + +-.+|.+.+.. .++......++.+++++....+-+...- ..+++.+.+|+..|..+.
T Consensus 477 ~p~~~Av~-~--~------~~~lTY~eL~~~a~~lA~~L~~~Gv~~g~~V~i~~~~s~~~v-v~~lailkaG~~~vpldp 546 (1304)
T 2vsq_A 477 NPDAPALT-Y--S------GQTLSYRELDEEANRIARRLQKHGAGKGSVVALYTKRSLELV-IGILGVLKAGAAYLPVDP 546 (1304)
T ss_dssp CTTSEEEE-S--S------SCEEEHHHHHHHHHHHHHHHHHTTCCTTCEEEECCCSSHHHH-HHHHHHHHTTCEEEECCT
T ss_pred CCCCeEEE-E--C------CeeEcHHHHHHHHHHHHHHHHhcCcCCcCEEEEEeCCCHHHH-HHHHHHHHHCCEEEEECC
Confidence 57777765 2 1 23578887744 4444445568999999998887776533 446789999999999987
Q ss_pred CCChhhHHHHHHHcCCeEEeecHHH
Q 006121 431 SPLERSFGKFVQDAGVTVLGTVPSL 455 (660)
Q Consensus 431 ~~~~~~l~~~i~~~~vt~l~~~P~~ 455 (660)
....+++..+++..++.++.+.+..
T Consensus 547 ~~p~~rl~~il~~~~~~~vl~~~~~ 571 (1304)
T 2vsq_A 547 KLPEDRISYMLADSAAACLLTHQEM 571 (1304)
T ss_dssp TSCHHHHHHHHHHHTCCEEEECSTT
T ss_pred CCHHHHHHHHHHHcCCCEEEECcch
Confidence 7777899999999999998876553
No 81
>3nyq_A Malonyl-COA ligase; A/B topology ababa sandwich beta-barrel adenylate-forming EN fold; HET: MCA AMP; 1.43A {Streptomyces coelicolor} PDB: 3nyr_A*
Probab=32.52 E-value=1.1e+02 Score=32.08 Aligned_cols=78 Identities=10% Similarity=0.085 Sum_probs=58.3
Q ss_pred EEecchhhHHHHHHhhHhcCCCCCCEEEEecCccccchhhHHHHhhhcCcEEEEecCCCChhhHHHHHHHcCCeEEeecH
Q 006121 374 IPWTQLSSIRCTAEGWAHIDLKVGDVYCWPTNLGWVMGPVILFSSFLNGATLALYQGSPLERSFGKFVQDAGVTVLGTVP 453 (660)
Q Consensus 374 V~~sh~~l~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~l~~G~~lv~~~~~~~~~~l~~~i~~~~vt~l~~~P 453 (660)
-.+|.+.+...+......+ ..++++...++-+...- ..+++++..|+..+.++.....+++...+++.++.++...+
T Consensus 47 ~~~Ty~eL~~~~~~~A~~L--~~~~~V~i~~~~~~~~~-~~~la~~~~Ga~~vpl~~~~~~~~l~~il~~~~~~~vi~~~ 123 (505)
T 3nyq_A 47 RSLTYAELAAAAGATAGRI--GGAGRVAVWATPAMETG-VAVVAALLAGVAAVPLNPKSGDKELAHILSDSAPSLVLAPP 123 (505)
T ss_dssp EEEEHHHHHHHHHHHHTTC--C---CEEEECCSSHHHH-HHHHHHHHHTCCEEEECTTCCHHHHHHHHHHHCCSEEEECT
T ss_pred eeeeHHHHHHHHHHHHhhc--cCCCEEEEEcCCCHHHH-HHHHHHHHhCCEEEEcCCCCCHHHHHHHHHHCCCCEEEECC
Confidence 4689998877766555444 46788887777665533 44778999999999998777788999999999999998765
Q ss_pred H
Q 006121 454 S 454 (660)
Q Consensus 454 ~ 454 (660)
.
T Consensus 124 ~ 124 (505)
T 3nyq_A 124 D 124 (505)
T ss_dssp T
T ss_pred c
Confidence 3
No 82
>3vc3_A Beta-cyanoalnine synthase; beta-cyanoalanine synthase, transferase; HET: C6P; 1.77A {Glycine max} PDB: 3vbe_A*
Probab=31.87 E-value=1.2e+02 Score=30.06 Aligned_cols=70 Identities=17% Similarity=0.237 Sum_probs=53.6
Q ss_pred HHHHHHHHHhc-cCCCCEEEEEcCCCHHHHHHHHHHHHcCcEEEecCCCCCHHHHHHHHHhcCeeEEEeec
Q 006121 219 VMLVANALDTM-FSKGDAIAIDMPMTVRAVIIYLAIILAGYVVVSIADSFAAREIATRLRVSKAKGIFTQD 288 (660)
Q Consensus 219 a~~lA~~L~~~-v~~gd~V~i~~~~s~~~vva~lA~lkaGa~~vpl~p~~p~~~l~~~l~~~~~~~il~~~ 288 (660)
.+.+.+...+. +++|.+..+....+-.-+..-+++.+.|.-++.+-|...+..-...++..++++++++.
T Consensus 71 ~~~i~~a~~~g~l~~g~~~Vv~aSsGN~g~alA~~aa~~G~~~~IvmP~~~~~~k~~~~~~~GA~Vv~v~~ 141 (344)
T 3vc3_A 71 YAMITDAEEKNLITPGKTTLIEPTSGNMGISMAFMAAMKGYKMVLTMPSYTSLERRVTMRAFGAELILTDP 141 (344)
T ss_dssp HHHHHHHHHTTCCCTTTCEEEEECSSHHHHHHHHHHHHHTCEEEEEEETTSCHHHHHHHHHTTCEEEEECG
T ss_pred HHHHHHHHHcCCCCCCCCEEEEeCCcHHHHHHHHHHHHcCCcEEEEECCCChHHHHHHHHHcCCEEEEECC
Confidence 34455555555 88888777788788888888899999998776666766666667788999999999875
No 83
>4h1h_A LMO1638 protein; MCCF-like, csgid, MCCF homolog, structural genomics, niaid, institute of allergy and infectious diseases; 2.46A {Listeria monocytogenes}
Probab=31.80 E-value=88 Score=30.94 Aligned_cols=70 Identities=21% Similarity=0.194 Sum_probs=44.3
Q ss_pred cCCCCEEEEEcCCCH------HHHHHHHHHH-HcCcEEEecCCC---------CC---HHHHHHHHHhcCeeEEEeecce
Q 006121 230 FSKGDAIAIDMPMTV------RAVIIYLAII-LAGYVVVSIADS---------FA---AREIATRLRVSKAKGIFTQDFI 290 (660)
Q Consensus 230 v~~gd~V~i~~~~s~------~~vva~lA~l-kaGa~~vpl~p~---------~p---~~~l~~~l~~~~~~~il~~~~~ 290 (660)
+++||+|+|++|.+. +-+-.-+..+ ..|.-++.-..- .+ ++.+..++.+-.+++|++....
T Consensus 9 L~~GD~I~ivaPSs~~~~~~~~~~~~~~~~L~~~G~~v~~~~~~~~~~~~~agtd~~Ra~dL~~a~~Dp~i~aI~~~rGG 88 (327)
T 4h1h_A 9 LKQGDEIRIIAPSRSIGIMADNQVEIAVNRLTDMGFKVTFGEHVAEMDCMMSSSIRSRVADIHEAFNDSSVKAILTVIGG 88 (327)
T ss_dssp CCTTCEEEEECSSSCGGGSCHHHHHHHHHHHHHTTCEEEECTTTTCCCTTSSCCHHHHHHHHHHHHHCTTEEEEEESCCC
T ss_pred CCCCCEEEEEeCCCCcCccCHHHHHHHHHHHHhCCCEEEECcchhhccCcccCCHHHHHHHHHHHhhCCCCCEEEEcCCc
Confidence 789999999999853 3333333433 346555433221 12 3356778889999999998776
Q ss_pred eecCccccc
Q 006121 291 LRGGRKFPL 299 (660)
Q Consensus 291 ~~~~~~~~~ 299 (660)
....+.++.
T Consensus 89 ~g~~rlL~~ 97 (327)
T 4h1h_A 89 FNSNQLLPY 97 (327)
T ss_dssp SCGGGGGGG
T ss_pred hhHHHHhhh
Confidence 554444444
No 84
>4e4g_A Methylmalonate-semialdehyde dehydrogenase; structural genomics, protein structure INI nysgrc, PSI-biology; 2.90A {Sinorhizobium meliloti}
Probab=29.25 E-value=1.7e+02 Score=31.03 Aligned_cols=75 Identities=13% Similarity=0.105 Sum_probs=47.4
Q ss_pred EEEEecCccccchh--hHHHHhhhcCcEEEEecCCCCh---hhHHHHHHHcC-----CeEEeecHHHHHHHHhcCCCCCC
Q 006121 399 VYCWPTNLGWVMGP--VILFSSFLNGATLALYQGSPLE---RSFGKFVQDAG-----VTVLGTVPSLVKAWRNTNCLEGL 468 (660)
Q Consensus 399 ~~l~~~~~~~~~~~--~~~~~~l~~G~~lv~~~~~~~~---~~l~~~i~~~~-----vt~l~~~P~~l~~l~~~~~~~~~ 468 (660)
+++..+|..|-..+ +-+..+|.+|.++|+-+....| ..+.+++.+.+ ++++.........|+++
T Consensus 165 VV~~I~PwN~P~~~~~~~~a~ALaaGN~VVlKpse~tp~t~~~l~~l~~eaGlP~gvv~vv~g~~~~~~~L~~~------ 238 (521)
T 4e4g_A 165 IGAGITPFNFPGMIPMWMFAPAIACGNAFILKPSERDPSVPIRLAELMIEAGLPAGILNVVNGDKGAVDAILTH------ 238 (521)
T ss_dssp EEEEECCSSCTTHHHHHHHHHHHHTTCEEEEECCTTSTHHHHHHHHHHHHTTCCTTSEEECCCCHHHHHHHHTC------
T ss_pred EEEEECCCcchHHHHHHHHHHHHHcCCEEEEECCCcchHHHHHHHHHHHHhCCCcCeEEEEeCChHHHHHHHhC------
Confidence 56667777765544 5577899999999998754433 45777787764 23444434555667654
Q ss_pred CccCccEEEeecC
Q 006121 469 DWTKIRSFASTGE 481 (660)
Q Consensus 469 ~l~~lr~v~~gGe 481 (660)
+.++.|.+.|.
T Consensus 239 --p~vd~I~FTGS 249 (521)
T 4e4g_A 239 --PDIAAVSFVGS 249 (521)
T ss_dssp --TTCCEEEEESC
T ss_pred --CCcCEEEEECC
Confidence 23555655554
No 85
>3tbh_A O-acetyl serine sulfhydrylase; cysteine synthase, type II PLP dependent enzyme, serine ACET transferase; HET: LLP; 1.68A {Leishmania donovani} PDB: 3spx_A* 3t4p_A* 4air_A*
Probab=28.53 E-value=1.8e+02 Score=28.60 Aligned_cols=68 Identities=19% Similarity=0.134 Sum_probs=47.4
Q ss_pred HHHHHHhc-cCCCCEEEEEcCCCHHHHHHHHHHHHcCcEEEecCCCCCHHHHHHHHHhcCeeEEEeecc
Q 006121 222 VANALDTM-FSKGDAIAIDMPMTVRAVIIYLAIILAGYVVVSIADSFAAREIATRLRVSKAKGIFTQDF 289 (660)
Q Consensus 222 lA~~L~~~-v~~gd~V~i~~~~s~~~vva~lA~lkaGa~~vpl~p~~p~~~l~~~l~~~~~~~il~~~~ 289 (660)
+.....+- +++|+.|.+....+-.-....+++.+.|.-++.+-|...+..-..+++..++++++++..
T Consensus 59 i~~a~~~g~l~~g~~vvv~aSsGN~g~alA~aa~~~G~~~~iv~p~~~~~~k~~~~~~~GA~V~~~~~~ 127 (334)
T 3tbh_A 59 YDKAEKEGKLIPGKSIVVESSSGNTGVSLAHLGAIRGYKVIITMPESMSLERRCLLRIFGAEVILTPAA 127 (334)
T ss_dssp HHHHHHTTSCCTTTCEEEEECSSHHHHHHHHHHHHHTCEEEEEEETTSCHHHHHHHHHTTCEEEEECGG
T ss_pred HHHHHHcCCCCCCCeEEEEeCCCHHHHHHHHHHHHhCCCEEEEECCCCCHHHHHHHHHCCCEEEEECCC
Confidence 33334444 688988755556677777777888888987665556554455567788999999999753
No 86
>3tla_A MCCF; serine protease, hydrolase; 1.20A {Escherichia coli} PDB: 3tle_A* 3tlg_A 3tlb_A* 3tlc_A* 3tlz_A* 3tly_A
Probab=26.65 E-value=1.1e+02 Score=30.79 Aligned_cols=71 Identities=13% Similarity=0.067 Sum_probs=46.1
Q ss_pred cCCCCEEEEEcCCCH------HHHHHHHHHHH-cCcEEEecCCC---------CCHH---HHHHHHHhcCeeEEEeecce
Q 006121 230 FSKGDAIAIDMPMTV------RAVIIYLAIIL-AGYVVVSIADS---------FAAR---EIATRLRVSKAKGIFTQDFI 290 (660)
Q Consensus 230 v~~gd~V~i~~~~s~------~~vva~lA~lk-aGa~~vpl~p~---------~p~~---~l~~~l~~~~~~~il~~~~~ 290 (660)
+++||+|+|++|.|. +-+-.-+..++ .|.-++.-... .+.+ .|..++.+-.+++|++....
T Consensus 40 Lk~GD~I~ivaPSs~~~~~~~~~~~~~~~~L~~~G~~v~~~~~~~~~~~~~agtd~~Ra~dL~~af~Dp~i~aI~~~rGG 119 (371)
T 3tla_A 40 LAVGDTIGFFSSSAPATVTAKNRFFRGVEFLQRKGFKLVSGKLTGKTDFYRSGTIKERAQEFNELVYNPDITCIMSTIGG 119 (371)
T ss_dssp CCTTCEEEEECSSCCHHHHTHHHHHHHHHHHHHTTCEEEECTTTTCCBTTBSSCHHHHHHHHHHHHTCTTEEEEEESCCC
T ss_pred CCCcCEEEEEeCCCCccccCHHHHHHHHHHHHhCCCEEEECCchhcccCccCCCHHHHHHHHHHHhhCCCCCEEEEcccc
Confidence 899999999999974 23333344444 57665543221 1233 46667788899999999876
Q ss_pred eecCccccch
Q 006121 291 LRGGRKFPLY 300 (660)
Q Consensus 291 ~~~~~~~~~~ 300 (660)
+...+.++.+
T Consensus 120 yga~rlLp~L 129 (371)
T 3tla_A 120 DNSNSLLPFL 129 (371)
T ss_dssp SCGGGGGGGS
T ss_pred ccHHHHHhhc
Confidence 6555555544
No 87
>3ezx_A MMCP 1, monomethylamine corrinoid protein 1; N terminal all helical bundle C terminal rossmann fold, cobalt, metal-binding; HET: HCB; 2.56A {Methanosarcina barkeri}
Probab=26.18 E-value=3.7e+02 Score=24.41 Aligned_cols=90 Identities=9% Similarity=-0.110 Sum_probs=52.6
Q ss_pred CEEEEecCc--cccchhhHHHHhh-hcCcEEEEecCCCChhhHHHHHHHcCCeEEee------cHHH--HHHHHhcCCCC
Q 006121 398 DVYCWPTNL--GWVMGPVILFSSF-LNGATLALYQGSPLERSFGKFVQDAGVTVLGT------VPSL--VKAWRNTNCLE 466 (660)
Q Consensus 398 ~~~l~~~~~--~~~~~~~~~~~~l-~~G~~lv~~~~~~~~~~l~~~i~~~~vt~l~~------~P~~--l~~l~~~~~~~ 466 (660)
.+++..++- .|+.|...+-..| .+|-.++.......++.+.+.+.++++..+.+ ++++ ++.+.+.....
T Consensus 93 ~~vll~~v~gd~HdiG~~iv~~~l~~~G~~Vi~LG~~vp~e~iv~~~~~~~~d~v~l~~S~l~~~~~~~~~~~i~~l~~~ 172 (215)
T 3ezx_A 93 GLAITFVAEGDIHDIGHRLVTTMLGANGFQIVDLGVDVLNENVVEEAAKHKGEKVLLVGSALMTTSMLGQKDLMDRLNEE 172 (215)
T ss_dssp CEEEEEECTTCCCCHHHHHHHHHHHHTSCEEEECCSSCCHHHHHHHHHHTTTSCEEEEEECSSHHHHTHHHHHHHHHHHT
T ss_pred CeEEEEeCCCChhHHHHHHHHHHHHHCCCeEEEcCCCCCHHHHHHHHHHcCCCEEEEEchhcccCcHHHHHHHHHHHHHc
Confidence 455544443 4888875443333 36667666655667889999999999987766 2322 22222211111
Q ss_pred CCCc-cCccEEEeecCCCChhhHHH
Q 006121 467 GLDW-TKIRSFASTGETSNVDDDLW 490 (660)
Q Consensus 467 ~~~l-~~lr~v~~gGe~l~~~~~~~ 490 (660)
. + ..++ +++||.+++++..+.
T Consensus 173 ~--~~~~v~-v~vGG~~~~~~~a~~ 194 (215)
T 3ezx_A 173 K--LRDSVK-CMFGGAPVSDKWIEE 194 (215)
T ss_dssp T--CGGGSE-EEEESSSCCHHHHHH
T ss_pred C--CCCCCE-EEEECCCCCHHHHHH
Confidence 1 1 1333 678999998765543
No 88
>4e5s_A MCCFLIKE protein (BA_5613); structural genomics, center for structural genomi infectious diseases, csgid, serine peptidase S66; 1.95A {Bacillus anthracis}
Probab=25.26 E-value=2e+02 Score=28.31 Aligned_cols=71 Identities=15% Similarity=0.157 Sum_probs=46.4
Q ss_pred cCCCCEEEEEcCCCH------HHHHHHHHHHH-cCcEEEecCCC---------CCHH---HHHHHHHhcCeeEEEeecce
Q 006121 230 FSKGDAIAIDMPMTV------RAVIIYLAIIL-AGYVVVSIADS---------FAAR---EIATRLRVSKAKGIFTQDFI 290 (660)
Q Consensus 230 v~~gd~V~i~~~~s~------~~vva~lA~lk-aGa~~vpl~p~---------~p~~---~l~~~l~~~~~~~il~~~~~ 290 (660)
+++||+|+|++|.+. +-+-.-+..++ .|.-++.-... .+.+ .|..++.+-.+++|++....
T Consensus 9 L~~GD~I~ivaPS~~~~~~~~~~~~~~~~~L~~~G~~v~~~~~~~~~~~~~ag~d~~Ra~dL~~a~~Dp~i~aI~~~rGG 88 (331)
T 4e5s_A 9 LKKGDEIRVISPSCSLSIVSTENRRLAVKRLTELGFHVTFSTHAEEIDRFASSSISSRVQDLHEAFRDPNVKAILTTLGG 88 (331)
T ss_dssp CCTTCEEEEECSSSCGGGSCHHHHHHHHHHHHHTTCEEEECTTTTCCCTTSSCCHHHHHHHHHHHHHCTTEEEEEESCCC
T ss_pred CCCcCEEEEEeCCCCccccCHHHHHHHHHHHHhCCCEEEECCchhcccCccCCCHHHHHHHHHHHhhCCCCCEEEEcccc
Confidence 789999999999875 33434444554 56665543211 1233 46677888899999998876
Q ss_pred eecCccccch
Q 006121 291 LRGGRKFPLY 300 (660)
Q Consensus 291 ~~~~~~~~~~ 300 (660)
....+.++.+
T Consensus 89 ~g~~rlL~~l 98 (331)
T 4e5s_A 89 YNSNGLLKYL 98 (331)
T ss_dssp SCGGGGGGGC
T ss_pred ccHHHHHhhc
Confidence 5555555544
No 89
>3ju8_A Succinylglutamic semialdehyde dehydrogenase; alpha-beta structure, structural genomics, PSI-2, protein ST initiative; HET: NAD; 1.82A {Pseudomonas aeruginosa}
Probab=25.21 E-value=2.1e+02 Score=29.94 Aligned_cols=65 Identities=11% Similarity=-0.049 Sum_probs=40.2
Q ss_pred CEEEEecCccccchh--hHHHHhhhcCcEEEEecCCCCh---hhHHHHHHHcC-----CeEEeecHHHHHHHHhc
Q 006121 398 DVYCWPTNLGWVMGP--VILFSSFLNGATLALYQGSPLE---RSFGKFVQDAG-----VTVLGTVPSLVKAWRNT 462 (660)
Q Consensus 398 ~~~l~~~~~~~~~~~--~~~~~~l~~G~~lv~~~~~~~~---~~l~~~i~~~~-----vt~l~~~P~~l~~l~~~ 462 (660)
-+++..+|..|-..+ +-+..+|.+|.++++-+....| ..+.+++.+.+ ++++...+..-..|+.+
T Consensus 141 GVv~~I~PwN~P~~~~~~~~~~ALaaGN~VVlKps~~tp~t~~~l~~l~~~aGlP~gvv~vv~g~~~~~~~L~~~ 215 (490)
T 3ju8_A 141 GVVAVFGPYNFPGHLPNGHIVPALLAGNCVVFKPSELTPKVAELTLKAWIQAGLPAGVLNLVQGGRETGVALAAH 215 (490)
T ss_dssp SEEEEECCSSSTTHHHHHHHHHHHHHTCEEEEECCTTCHHHHHHHHHHHHHTTCCTTTEEECCCSHHHHHHHHTC
T ss_pred CEEEEECCCcchHHHHHHHHHHHHHcCCeEEEECCCCCcHHHHHHHHHHHHhCcCcCeEEEEeCCHHHHHHHHhC
Confidence 366677777765543 5577899999999998754443 34566666653 23333334455556544
No 90
>1t90_A MMSDH, probable methylmalonate-semialdehyde dehydrogenase; oxidoreductase, NAD; HET: NAD; 2.50A {Bacillus subtilis}
Probab=24.66 E-value=2.1e+02 Score=29.99 Aligned_cols=76 Identities=14% Similarity=0.155 Sum_probs=47.6
Q ss_pred CEEEEecCccccchh--hHHHHhhhcCcEEEEecCCCCh---hhHHHHHHHcCC-----eEEeecHHHHHHHHhcCCCCC
Q 006121 398 DVYCWPTNLGWVMGP--VILFSSFLNGATLALYQGSPLE---RSFGKFVQDAGV-----TVLGTVPSLVKAWRNTNCLEG 467 (660)
Q Consensus 398 ~~~l~~~~~~~~~~~--~~~~~~l~~G~~lv~~~~~~~~---~~l~~~i~~~~v-----t~l~~~P~~l~~l~~~~~~~~ 467 (660)
-+++..+|..|-..+ +.+..+|.+|.++++-+....| ..+.+++.+.+. +++...+..-..|+++
T Consensus 143 GVV~~I~PwN~P~~~~~~~~~~ALaaGN~VVlKps~~tp~t~~~l~~l~~~aGlP~gvv~vv~g~~~~~~~L~~~----- 217 (486)
T 1t90_A 143 GVVGGIAPFNFPMMVPCWMFPMAIALGNTFILKPSERTPLLTEKLVELFEKAGLPKGVFNVVYGAHDVVNGILEH----- 217 (486)
T ss_dssp SEEEEECCSSCTTHHHHHHHHHHHHTTCEEEEECCSSSCHHHHHHHHHHHHTTCCTTSEEECCCSHHHHHHHHHC-----
T ss_pred CEEEEECCCchhHHHHHHHHHHHHHcCCEEEEECCCCChHHHHHHHHHHHHhCCCCCEEEEEECCHHHHHHHHhC-----
Confidence 467777888775443 5677899999999998754433 457777777632 3333333445556654
Q ss_pred CCccCccEEEeecC
Q 006121 468 LDWTKIRSFASTGE 481 (660)
Q Consensus 468 ~~l~~lr~v~~gGe 481 (660)
+.++.|.+.|.
T Consensus 218 ---~~v~~I~fTGS 228 (486)
T 1t90_A 218 ---PEIKAISFVGS 228 (486)
T ss_dssp ---TTEEEEEEESC
T ss_pred ---CCCCEEEEeCC
Confidence 23566665554
No 91
>3sr3_A Microcin immunity protein MCCF; csgid, structural genomics, MCCF protein, center for structu genomics of infectious diseases, immune system; 1.50A {Bacillus anthracis} PDB: 3gjz_A 3t5m_A* 3u1b_A* 3tyx_A*
Probab=23.23 E-value=1.8e+02 Score=28.70 Aligned_cols=71 Identities=15% Similarity=0.203 Sum_probs=45.9
Q ss_pred cCCCCEEEEEcCCCH------HHHHHHHHHHH-cCcEEEecCCC---------CCH---HHHHHHHHhcCeeEEEeecce
Q 006121 230 FSKGDAIAIDMPMTV------RAVIIYLAIIL-AGYVVVSIADS---------FAA---REIATRLRVSKAKGIFTQDFI 290 (660)
Q Consensus 230 v~~gd~V~i~~~~s~------~~vva~lA~lk-aGa~~vpl~p~---------~p~---~~l~~~l~~~~~~~il~~~~~ 290 (660)
+++||+|+|++|.+. +-+-.-+..++ .|.-++.-... .+. +.|..++.+-.+++|++....
T Consensus 10 L~~GD~I~ivaPSs~~~~~~~~~~~~~~~~L~~~G~~v~~~~~~~~~~~~~ag~d~~Ra~dL~~a~~Dp~i~aI~~~rGG 89 (336)
T 3sr3_A 10 LKYGDTIGIYSPSSPVTYTSPKRFERAKSYLLQKGFHILEGSLTGRYDYYRSGSIQERAKELNALIRNPNVSCIMSTIGG 89 (336)
T ss_dssp CCTTCEEEEECSSSCHHHHCHHHHHHHHHHHHHTTCEEEECTTTTCCBTTBSSCHHHHHHHHHHHHHCTTEEEEEESCCC
T ss_pred CCCCCEEEEEeCCCCccccCHHHHHHHHHHHHhCCCEEEEcccccccccccCCCHHHHHHHHHHHhhCCCCCEEEEcccc
Confidence 889999999999984 23333344444 57665542211 122 346677888899999999876
Q ss_pred eecCccccch
Q 006121 291 LRGGRKFPLY 300 (660)
Q Consensus 291 ~~~~~~~~~~ 300 (660)
....+.++.+
T Consensus 90 ~g~~rlL~~l 99 (336)
T 3sr3_A 90 MNSNSLLPYI 99 (336)
T ss_dssp SCGGGGGGGS
T ss_pred ccHHHHhhhc
Confidence 5555555543
No 92
>3prl_A NADP-dependent glyceraldehyde-3-phosphate dehydro; structural genomics, protein structure initiative, dehydroge PSI-biology; 2.00A {Bacillus halodurans} PDB: 3rhh_A*
Probab=21.89 E-value=2.3e+02 Score=29.84 Aligned_cols=75 Identities=13% Similarity=0.140 Sum_probs=46.0
Q ss_pred EEEEecCccccchh--hHHHHhhhcCcEEEEecCCCCh---hhHHHHHHHcC-----CeEEeec-HHHHHHHHhcCCCCC
Q 006121 399 VYCWPTNLGWVMGP--VILFSSFLNGATLALYQGSPLE---RSFGKFVQDAG-----VTVLGTV-PSLVKAWRNTNCLEG 467 (660)
Q Consensus 399 ~~l~~~~~~~~~~~--~~~~~~l~~G~~lv~~~~~~~~---~~l~~~i~~~~-----vt~l~~~-P~~l~~l~~~~~~~~ 467 (660)
+++..+|..|-..+ +-+..+|.+|.++|+-+....| ..+.+++.+.+ ++++... +..-..|..+
T Consensus 155 VV~~I~PwN~P~~~~~~~~a~ALaaGN~VVlKpse~tp~ta~~l~~ll~eaGlP~gvv~vv~g~~~~~g~~L~~~----- 229 (505)
T 3prl_A 155 VVLAISPFNYPVNLAAAKIAPALVTGNTVVFKPATQGSLSGIKMVEALADAGAPEGIIQVVTGRGSVIGDHLVEH----- 229 (505)
T ss_dssp EEEEEECSSSTTHHHHHHHHHHHHTTCEEEEEECSTTHHHHHHHHHHHHHTTCCTTSEEECCCCHHHHHHHHHTC-----
T ss_pred EEEEECCCccHHHHHHHHHHHHHHcCCEEEEECCCCChHHHHHHHHHHHHhCcCcCeEEEEeCCCHHHHHHHHhC-----
Confidence 56666777765444 5578899999999998754443 35667777753 2333332 3345566654
Q ss_pred CCccCccEEEeecC
Q 006121 468 LDWTKIRSFASTGE 481 (660)
Q Consensus 468 ~~l~~lr~v~~gGe 481 (660)
+.++.|.+.|.
T Consensus 230 ---p~vd~I~FTGS 240 (505)
T 3prl_A 230 ---PGIDMITFTGG 240 (505)
T ss_dssp ---TTCCEEEEESC
T ss_pred ---CCCCEEEEeCC
Confidence 34566655554
No 93
>1uxt_A Glyceraldehyde-3-phosphate dehydrogenase (NADP+); GAPN, ALDH, glucose 1-phosphate, glycolysis, regulation, catatysis, oxidoreductase; HET: G1P NAD; 2.2A {Thermoproteus tenax} SCOP: c.82.1.1 PDB: 1uxp_A* 1uxq_A* 1uxr_A* 1uxn_A* 1uxu_A* 1uxv_A* 1ky8_A*
Probab=21.24 E-value=3.2e+02 Score=28.67 Aligned_cols=76 Identities=16% Similarity=0.113 Sum_probs=46.7
Q ss_pred CEEEEecCccccchh--hHHHHhhhcCcEEEEecCCCCh---hhHHHHHHHcCC-----eEEeecHHHHHHHHhcCCCCC
Q 006121 398 DVYCWPTNLGWVMGP--VILFSSFLNGATLALYQGSPLE---RSFGKFVQDAGV-----TVLGTVPSLVKAWRNTNCLEG 467 (660)
Q Consensus 398 ~~~l~~~~~~~~~~~--~~~~~~l~~G~~lv~~~~~~~~---~~l~~~i~~~~v-----t~l~~~P~~l~~l~~~~~~~~ 467 (660)
-+++..+|..|-..+ +.+..+|++|.++++-+....| ..+.+++.+.+. +++......-..|..+
T Consensus 159 GVv~~I~PwN~P~~~~~~~~~~ALaaGN~VVlKps~~tp~t~~~l~~l~~eaGlP~gvv~vv~g~~~~g~~L~~~----- 233 (501)
T 1uxt_A 159 GVVAAITPFNYPLFDAVNKITYSFIYGNAVVVKPSISDPLPAAMAVKALLDAGFPPDAIALLNLPGKEAEKIVAD----- 233 (501)
T ss_dssp SEEEEECCTTSTTHHHHHHHHHHHHTTCEEEEECCTTSCHHHHHHHHHHHHTTCCTTSEEECCCCHHHHHHHHTC-----
T ss_pred cEEEEECCCccHHHHHHHHHHHHHHcCCEEEEeCCCCchHHHHHHHHHHHHhCCCcCeEEEEeCCcHHHHHHHhC-----
Confidence 467778887775444 5678999999999998754433 457777777532 2232222344455543
Q ss_pred CCccCccEEEeecC
Q 006121 468 LDWTKIRSFASTGE 481 (660)
Q Consensus 468 ~~l~~lr~v~~gGe 481 (660)
+.++.|.+.|.
T Consensus 234 ---~~vd~I~FTGS 244 (501)
T 1uxt_A 234 ---DRVAAVSFTGS 244 (501)
T ss_dssp ---TTCCEEEEESC
T ss_pred ---CCcCEEEEeCc
Confidence 24566666664
No 94
>3ek1_A Aldehyde dehydrogenase; ssgcid, oxidoreductase, structural genomics; HET: MES; 2.10A {Brucella melitensis biovar ABORTUS2308}
Probab=21.18 E-value=2.5e+02 Score=29.51 Aligned_cols=75 Identities=17% Similarity=0.205 Sum_probs=46.2
Q ss_pred EEEEecCccccchh--hHHHHhhhcCcEEEEecCCCCh---hhHHHHHHHcCC--eEEeec----HHHHHHHHhcCCCCC
Q 006121 399 VYCWPTNLGWVMGP--VILFSSFLNGATLALYQGSPLE---RSFGKFVQDAGV--TVLGTV----PSLVKAWRNTNCLEG 467 (660)
Q Consensus 399 ~~l~~~~~~~~~~~--~~~~~~l~~G~~lv~~~~~~~~---~~l~~~i~~~~v--t~l~~~----P~~l~~l~~~~~~~~ 467 (660)
+++..+|+.|-..+ +-+..+|.+|.++|+-+....| ..+.+++.+.+. .++.++ +..-..|.++
T Consensus 171 VV~~I~PwN~P~~~~~~~~a~ALaaGN~VVlKPs~~tp~t~~~l~~l~~eaGlP~gv~~vv~g~~~~~g~~L~~~----- 245 (504)
T 3ek1_A 171 VTAAITPWNFPAAMITRKAAPALAAGCTMIVRPADLTPLTALALGVLAEKAGIPAGVLQIVTGKAREIGAELTSN----- 245 (504)
T ss_dssp EEEEECCSSSTTHHHHHHHHHHHHHTCEEEEECCTTSCHHHHHHHHHHHHTTCCTTTEEECCSCHHHHHHHHHHC-----
T ss_pred EEEEECCCcchHHHHHHHHHHHHHcCCEEEEECCCcChHHHHHHHHHHHHhCCCcccEEEEeCCCHHHHHHHHhC-----
Confidence 56777777775544 5678899999999998754433 456677777532 223322 3345566654
Q ss_pred CCccCccEEEeecC
Q 006121 468 LDWTKIRSFASTGE 481 (660)
Q Consensus 468 ~~l~~lr~v~~gGe 481 (660)
+.++.|.+.|.
T Consensus 246 ---p~v~~V~FTGS 256 (504)
T 3ek1_A 246 ---DTVRKLSFTGS 256 (504)
T ss_dssp ---TTCCEEEEESC
T ss_pred ---CCcCEEEEECC
Confidence 23555665554
No 95
>3etf_A Putative succinate-semialdehyde dehydrogenase; center for ST genomics of infectious diseases, oxidoreductase, csgid; 1.85A {Salmonella typhimurium} PDB: 3efv_A
Probab=21.13 E-value=2.9e+02 Score=28.63 Aligned_cols=75 Identities=15% Similarity=0.140 Sum_probs=45.7
Q ss_pred EEEEecCccccchh--hHHHHhhhcCcEEEEecCCCCh---hhHHHHHHHcC-----CeEEeecHHHHHHHHhcCCCCCC
Q 006121 399 VYCWPTNLGWVMGP--VILFSSFLNGATLALYQGSPLE---RSFGKFVQDAG-----VTVLGTVPSLVKAWRNTNCLEGL 468 (660)
Q Consensus 399 ~~l~~~~~~~~~~~--~~~~~~l~~G~~lv~~~~~~~~---~~l~~~i~~~~-----vt~l~~~P~~l~~l~~~~~~~~~ 468 (660)
+++..+|..|-..+ +-+..+|.+|.++++-+....| ..+.+++.+.+ ++++...+.....|+.+
T Consensus 129 Vv~~I~PwN~P~~~~~~~~~~ALaaGN~VvlKps~~tp~~~~~l~~~l~~aglP~gv~~vv~g~~~~~~~l~~~------ 202 (462)
T 3etf_A 129 VILAIMPWNFPLWQVLRGAVPILLAGNSYLLKHAPNVTGCAQMIARILAEAGTPAGVYGWVNANNEGVSQMIND------ 202 (462)
T ss_dssp EEEEECCSSSTTHHHHHHHHHHHHTTCEEEEECCTTCHHHHHHHHHHHHHTTCCBTTEEECCCCHHHHHHHHTS------
T ss_pred EEEEECCCchHHHHHHHHHHHHHhcCCEEEEECCCCCcHHHHHHHHHHHHhCCCcCeEEEEECCHHHHHHHhcC------
Confidence 56667777765544 4578899999999998754443 34666666643 23333334555566544
Q ss_pred CccCccEEEeecC
Q 006121 469 DWTKIRSFASTGE 481 (660)
Q Consensus 469 ~l~~lr~v~~gGe 481 (660)
+.++.|.+.|.
T Consensus 203 --~~v~~v~fTGS 213 (462)
T 3etf_A 203 --PRIAAVTVTGS 213 (462)
T ss_dssp --TTEEEEEEESC
T ss_pred --CCCCEEEEeCC
Confidence 24555655554
No 96
>3r31_A BADH, betaine aldehyde dehydrogenase; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc; 2.15A {Agrobacterium tumefaciens}
Probab=20.60 E-value=2.1e+02 Score=30.32 Aligned_cols=75 Identities=11% Similarity=0.088 Sum_probs=45.6
Q ss_pred EEEEecCccccchh--hHHHHhhhcCcEEEEecCCCC---hhhHHHHHHHcCC-----eEEeecHHHHHHHHhcCCCCCC
Q 006121 399 VYCWPTNLGWVMGP--VILFSSFLNGATLALYQGSPL---ERSFGKFVQDAGV-----TVLGTVPSLVKAWRNTNCLEGL 468 (660)
Q Consensus 399 ~~l~~~~~~~~~~~--~~~~~~l~~G~~lv~~~~~~~---~~~l~~~i~~~~v-----t~l~~~P~~l~~l~~~~~~~~~ 468 (660)
+++..+|..|-..+ +-+..+|.+|.++|+-+.... ...+.+++.+.+. +++..-+..-..|+++
T Consensus 153 VV~~I~PwN~P~~~~~~~~a~ALaaGN~VVlKps~~tp~t~~~l~~ll~eaGlP~gvv~vv~g~~~~g~~L~~~------ 226 (517)
T 3r31_A 153 VCVGIGAWNYPQQIACWKAAPALVAGNAMVFKPSENTPLGALKIAEILIEAGLPKGLFNVIQGDRDTGPLLVNH------ 226 (517)
T ss_dssp EEEEECCSSSHHHHHHHHHHHHHHTTCEEEEECCTTSCSHHHHHHHHHHHTTCCTTSEEECCCCTTHHHHHHTC------
T ss_pred EEEEECCCcchHHHHHHHHHHHHHcCCEEEEEcCcccHHHHHHHHHHHHHhCcCcccEEEEECCHHHHHHHHhC------
Confidence 56667777765443 557789999999999875433 3456777777642 3333333455566543
Q ss_pred CccCccEEEeecC
Q 006121 469 DWTKIRSFASTGE 481 (660)
Q Consensus 469 ~l~~lr~v~~gGe 481 (660)
+.++.|.+.|.
T Consensus 227 --p~vd~I~FTGS 237 (517)
T 3r31_A 227 --PDVAKVSLTGS 237 (517)
T ss_dssp --TTEEEEEEESC
T ss_pred --CCcCEEeccCC
Confidence 33555655553
No 97
>3ri6_A O-acetylhomoserine sulfhydrylase; PYR 5'-phosphate, gamma-elimination, direct sulfhydrylation, CY metabolism, protein thiocarboxylate, TR; 2.20A {Wolinella succinogenes}
Probab=20.40 E-value=3.7e+02 Score=27.38 Aligned_cols=58 Identities=10% Similarity=0.107 Sum_probs=36.0
Q ss_pred cCCCCEEEEEcCCCHHHHHHHH-HHHHcCcEEEecCCCCCHHHHHHHHHhcCeeEEEeecc
Q 006121 230 FSKGDAIAIDMPMTVRAVIIYL-AIILAGYVVVSIADSFAAREIATRLRVSKAKGIFTQDF 289 (660)
Q Consensus 230 v~~gd~V~i~~~~s~~~vva~l-A~lkaGa~~vpl~p~~p~~~l~~~l~~~~~~~il~~~~ 289 (660)
+++||.|.+.-+.-....-.+- .+.+.|+.++.++.. ..+.++..++. +.++|+.+.-
T Consensus 118 ~~~Gd~Vi~~~~~y~~~~~~~~~~~~~~G~~~~~v~~~-d~~~l~~ai~~-~t~~v~~e~p 176 (430)
T 3ri6_A 118 ARAGDSVVTTDRLFGHTLSLFQKTLPSFGIEVRFVDVM-DSLAVEHACDE-TTKLLFLETI 176 (430)
T ss_dssp CCTTCEEEEETTCCHHHHHHHHTHHHHTTCEEEEECTT-CHHHHHHHCCT-TEEEEEEESS
T ss_pred hCCCCEEEEcCCCchhHHHHHHHHHHHcCCEEEEeCCC-CHHHHHHhhCC-CCeEEEEECC
Confidence 6788888666555444433332 456678777777665 56667666654 5677776543
No 98
>2duw_A Putative COA-binding protein; ligand binding protein; NMR {Klebsiella pneumoniae}
Probab=20.37 E-value=1.5e+02 Score=25.18 Aligned_cols=52 Identities=13% Similarity=-0.026 Sum_probs=38.7
Q ss_pred CCCEEEEEcCCCHHHHHHHHHHHHcCcEEEecCCCCCHHHHHHHHHhcCeeEE
Q 006121 232 KGDAIAIDMPMTVRAVIIYLAIILAGYVVVSIADSFAAREIATRLRVSKAKGI 284 (660)
Q Consensus 232 ~gd~V~i~~~~s~~~vva~lA~lkaGa~~vpl~p~~p~~~l~~~l~~~~~~~i 284 (660)
+=|.|.|+.|. ....-.+..|.++|.-.+.+++....+++...+++.+.+++
T Consensus 70 ~~Dlvii~vp~-~~v~~v~~~~~~~g~~~i~i~~~~~~~~l~~~a~~~Gi~~i 121 (145)
T 2duw_A 70 KVDMVDVFRNS-EAAWGVAQEAIAIGAKTLWLQLGVINEQAAVLAREAGLSVV 121 (145)
T ss_dssp CCSEEECCSCS-THHHHHHHHHHHHTCCEEECCTTCCCHHHHHHHHTTTCEEE
T ss_pred CCCEEEEEeCH-HHHHHHHHHHHHcCCCEEEEcCChHHHHHHHHHHHcCCEEE
Confidence 34778888874 45555555677788766777787778899999999988765
No 99
>3i44_A Aldehyde dehydrogenase; oxidoreductase, structural genomics, seattle structural genomics center for infectious disease, ssgcid; 2.00A {Bartonella henselae}
Probab=20.18 E-value=2.2e+02 Score=29.98 Aligned_cols=48 Identities=21% Similarity=0.347 Sum_probs=32.5
Q ss_pred CEEEEecCccccchh--hHHHHhhhcCcEEEEecCCCCh---hhHHHHHHHcC
Q 006121 398 DVYCWPTNLGWVMGP--VILFSSFLNGATLALYQGSPLE---RSFGKFVQDAG 445 (660)
Q Consensus 398 ~~~l~~~~~~~~~~~--~~~~~~l~~G~~lv~~~~~~~~---~~l~~~i~~~~ 445 (660)
-+++..+|..|-..+ +-+..+|.+|.++|+-+....| ..+.+++.+.+
T Consensus 163 GVv~~I~PwN~P~~~~~~~~a~ALaaGN~VVlKps~~tp~t~~~l~~l~~eaG 215 (497)
T 3i44_A 163 GVVGLITPWNWPMNQVTLKVIPALLAGCTMVLKPSEIAPLSAMLFAEILDEAA 215 (497)
T ss_dssp CEEEEECCSSSHHHHHHHHHHHHHHHTCEEEEECCTTSCHHHHHHHHHHHHTT
T ss_pred eEEEEECCCcchHHHHHHHHHHHHHcCCEEEEECCcccHHHHHHHHHHHHHhC
Confidence 356677777775443 5678899999999998754433 34566666653
No 100
>2o2p_A Formyltetrahydrofolate dehydrogenase; aldehyde dehydrogenase, FDH, oxidoreductase; 1.70A {Rattus norvegicus} PDB: 2o2q_A* 2o2r_A* 3rho_A* 3rhm_A* 3rhj_A* 3rhq_A* 3rhp_A* 3rhr_A* 3rhl_A*
Probab=20.09 E-value=2.7e+02 Score=29.46 Aligned_cols=75 Identities=13% Similarity=0.158 Sum_probs=45.7
Q ss_pred EEEEecCccccchh--hHHHHhhhcCcEEEEecCCCCh---hhHHHHHHHcCC-----eEEeec-HHHHHHHHhcCCCCC
Q 006121 399 VYCWPTNLGWVMGP--VILFSSFLNGATLALYQGSPLE---RSFGKFVQDAGV-----TVLGTV-PSLVKAWRNTNCLEG 467 (660)
Q Consensus 399 ~~l~~~~~~~~~~~--~~~~~~l~~G~~lv~~~~~~~~---~~l~~~i~~~~v-----t~l~~~-P~~l~~l~~~~~~~~ 467 (660)
+++..+|..|-..+ +.+..+|++|.++|+-+....| ..+.+++.+.+. +++... +..-..|.++
T Consensus 181 VV~~I~PwN~P~~~~~~~~a~ALaaGNtVVlKps~~tp~ta~~l~~l~~eaGlP~gvv~vv~g~g~~~g~~L~~~----- 255 (517)
T 2o2p_A 181 VCGIVIPWNYPLMMLSWKTAACLAAGNTVVIKPAQVTPLTALKFAELTLKAGIPKGVVNILPGSGSLVGQRLSDH----- 255 (517)
T ss_dssp EEEEECCSSSHHHHHHHHHHHHHHTTCEEEEECCTTCCHHHHHHHHHHHHTTCCTTSEEECCSCHHHHHHHHHHC-----
T ss_pred cEEEECCCcchHHHHHHHHHHHHHcCCEEEEECCCccHHHHHHHHHHHHHhCCCcCeEEEEeCCCHHHHHHHHhC-----
Confidence 56777787765444 5677899999999998754443 457777777632 233221 2244556554
Q ss_pred CCccCccEEEeecC
Q 006121 468 LDWTKIRSFASTGE 481 (660)
Q Consensus 468 ~~l~~lr~v~~gGe 481 (660)
+.++.|.+.|.
T Consensus 256 ---~~v~~V~FTGS 266 (517)
T 2o2p_A 256 ---PDVRKIGFTGS 266 (517)
T ss_dssp ---TTCCEEEEESC
T ss_pred ---CCCCEEEEECC
Confidence 23566655554
Done!