Query 006122
Match_columns 660
No_of_seqs 416 out of 3449
Neff 9.1
Searched_HMMs 46136
Date Thu Mar 28 18:40:27 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/006122.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/006122hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG0922 DEAH-box RNA helicase 100.0 1E-133 3E-138 1048.9 59.2 603 34-660 35-649 (674)
2 KOG0923 mRNA splicing factor A 100.0 4E-132 8E-137 1023.0 47.9 600 39-660 254-865 (902)
3 KOG0924 mRNA splicing factor A 100.0 1E-128 2E-133 997.9 50.7 584 40-647 346-930 (1042)
4 KOG0925 mRNA splicing factor A 100.0 7E-127 2E-131 953.2 49.2 605 26-659 24-648 (699)
5 PRK11131 ATP-dependent RNA hel 100.0 1E-107 3E-112 935.0 60.2 574 44-651 68-666 (1294)
6 COG1643 HrpA HrpA-like helicas 100.0 2E-105 3E-110 888.6 55.3 583 36-647 36-657 (845)
7 TIGR01967 DEAH_box_HrpA ATP-de 100.0 2E-104 3E-109 913.2 61.1 574 44-651 61-656 (1283)
8 KOG0926 DEAH-box RNA helicase 100.0 3E-103 7E-108 821.5 45.3 593 40-651 246-991 (1172)
9 KOG0920 ATP-dependent RNA heli 100.0 3E-102 7E-107 856.3 43.6 594 32-647 155-803 (924)
10 TIGR01970 DEAH_box_HrpB ATP-de 100.0 6.8E-85 1.5E-89 737.0 56.7 530 49-647 1-535 (819)
11 PRK11664 ATP-dependent RNA hel 100.0 2.9E-83 6.2E-88 725.9 56.6 527 48-651 3-537 (812)
12 KOG0921 Dosage compensation co 100.0 5.7E-60 1.2E-64 501.1 22.6 573 36-631 364-1012(1282)
13 PHA02653 RNA helicase NPH-II; 100.0 3.9E-55 8.6E-60 483.8 36.1 395 54-502 168-595 (675)
14 PRK01172 ski2-like helicase; P 100.0 1.8E-44 3.9E-49 411.3 39.2 446 29-513 3-504 (674)
15 PRK02362 ski2-like helicase; P 100.0 8.2E-43 1.8E-47 400.2 44.8 449 29-503 3-515 (737)
16 KOG0330 ATP-dependent RNA heli 100.0 1.7E-42 3.7E-47 339.9 19.5 338 25-412 59-410 (476)
17 PRK00254 ski2-like helicase; P 100.0 3E-40 6.5E-45 378.1 40.0 461 29-518 3-525 (720)
18 KOG0331 ATP-dependent RNA heli 100.0 1.2E-41 2.6E-46 356.5 24.2 340 28-413 92-452 (519)
19 PRK11776 ATP-dependent RNA hel 100.0 1.2E-40 2.6E-45 364.3 28.4 337 27-412 4-352 (460)
20 PTZ00110 helicase; Provisional 100.0 4.3E-40 9.3E-45 363.5 27.5 339 27-412 130-487 (545)
21 PRK10590 ATP-dependent RNA hel 100.0 1.5E-39 3.3E-44 354.0 27.8 336 28-412 2-355 (456)
22 COG0513 SrmB Superfamily II DN 100.0 1.9E-39 4.1E-44 355.0 28.3 335 25-409 27-380 (513)
23 PRK04837 ATP-dependent RNA hel 100.0 1.5E-39 3.2E-44 351.8 26.5 336 26-411 7-364 (423)
24 PRK11192 ATP-dependent RNA hel 100.0 3.9E-39 8.5E-44 350.2 29.4 337 28-413 2-356 (434)
25 PLN00206 DEAD-box ATP-dependen 100.0 4.6E-39 1E-43 354.4 26.4 337 27-412 121-478 (518)
26 COG1204 Superfamily II helicas 100.0 6.8E-38 1.5E-42 351.4 35.2 426 52-503 34-527 (766)
27 PTZ00424 helicase 45; Provisio 100.0 1.1E-38 2.3E-43 344.1 27.6 341 25-413 26-378 (401)
28 PRK04537 ATP-dependent RNA hel 100.0 1.3E-38 2.8E-43 352.8 27.6 334 28-411 10-366 (572)
29 PRK01297 ATP-dependent RNA hel 100.0 1.7E-38 3.7E-43 348.2 27.7 335 26-411 86-444 (475)
30 KOG0343 RNA Helicase [RNA proc 100.0 5.9E-39 1.3E-43 326.9 20.4 336 27-410 69-423 (758)
31 KOG0338 ATP-dependent RNA heli 100.0 2.4E-39 5.1E-44 327.0 15.9 358 7-410 158-534 (691)
32 PRK11634 ATP-dependent RNA hel 100.0 7.1E-38 1.5E-42 348.7 29.3 335 28-411 7-354 (629)
33 KOG0328 Predicted ATP-dependen 100.0 2.2E-38 4.8E-43 298.1 20.1 341 27-413 27-377 (400)
34 KOG0333 U5 snRNP-like RNA heli 100.0 8.8E-38 1.9E-42 316.9 21.3 333 27-410 245-625 (673)
35 TIGR03817 DECH_helic helicase/ 100.0 9.4E-37 2E-41 346.3 31.0 329 41-407 27-384 (742)
36 COG1202 Superfamily II helicas 100.0 1.2E-36 2.6E-41 311.5 24.8 442 29-524 196-687 (830)
37 KOG0345 ATP-dependent RNA heli 100.0 2.4E-36 5.2E-41 303.2 24.5 353 29-428 6-385 (567)
38 KOG0326 ATP-dependent RNA heli 100.0 1.5E-37 3.2E-42 297.2 14.6 346 17-411 75-431 (459)
39 TIGR00614 recQ_fam ATP-depende 100.0 1.3E-35 2.8E-40 324.2 30.9 310 51-413 12-337 (470)
40 PLN03137 ATP-dependent DNA hel 100.0 8.1E-36 1.8E-40 335.7 29.0 309 49-412 459-790 (1195)
41 PRK11057 ATP-dependent DNA hel 100.0 3.6E-35 7.7E-40 328.9 29.4 318 41-412 15-346 (607)
42 KOG0342 ATP-dependent RNA heli 100.0 1.8E-35 3.9E-40 299.2 24.1 338 28-411 83-439 (543)
43 KOG0952 DNA/RNA helicase MER3/ 100.0 1.1E-33 2.4E-38 307.6 28.9 475 54-555 114-683 (1230)
44 TIGR01389 recQ ATP-dependent D 100.0 4.3E-34 9.3E-39 321.3 25.4 306 51-412 14-334 (591)
45 PRK13767 ATP-dependent helicas 100.0 2.4E-33 5.3E-38 324.8 31.8 339 37-407 20-398 (876)
46 KOG0340 ATP-dependent RNA heli 100.0 4.2E-34 9.1E-39 277.7 20.9 344 27-412 7-364 (442)
47 COG1201 Lhr Lhr-like helicases 100.0 6.3E-33 1.4E-37 306.9 29.3 387 34-466 7-438 (814)
48 KOG0335 ATP-dependent RNA heli 100.0 3.2E-34 7E-39 295.4 17.3 339 28-407 75-442 (482)
49 KOG0336 ATP-dependent RNA heli 100.0 9.1E-34 2E-38 279.3 17.3 311 55-413 247-576 (629)
50 KOG0348 ATP-dependent RNA heli 100.0 3.6E-33 7.8E-38 283.9 21.4 369 25-413 134-560 (708)
51 KOG0339 ATP-dependent RNA heli 100.0 2.5E-33 5.5E-38 283.0 19.7 342 26-412 222-578 (731)
52 KOG0347 RNA helicase [RNA proc 100.0 4.5E-35 9.8E-40 298.6 4.9 349 27-412 181-573 (731)
53 PRK09751 putative ATP-dependen 100.0 2.1E-32 4.5E-37 321.1 26.6 294 70-398 1-372 (1490)
54 KOG0332 ATP-dependent RNA heli 100.0 4.2E-32 9.1E-37 265.3 20.8 346 22-410 85-444 (477)
55 TIGR00580 mfd transcription-re 100.0 2.1E-31 4.6E-36 305.2 28.8 304 51-409 452-770 (926)
56 COG1111 MPH1 ERCC4-like helica 100.0 3.8E-32 8.3E-37 277.4 20.1 328 50-409 15-481 (542)
57 TIGR02621 cas3_GSU0051 CRISPR- 100.0 4.5E-31 9.8E-36 293.8 27.1 340 49-439 14-421 (844)
58 COG0514 RecQ Superfamily II DN 100.0 1.7E-31 3.7E-36 285.5 21.5 308 54-412 21-340 (590)
59 PRK10917 ATP-dependent DNA hel 100.0 1.3E-30 2.8E-35 295.2 29.3 306 47-407 258-587 (681)
60 KOG0350 DEAD-box ATP-dependent 100.0 1.4E-31 3E-36 270.7 18.4 319 50-412 159-543 (620)
61 TIGR00643 recG ATP-dependent D 100.0 1.5E-30 3.2E-35 292.9 27.5 302 51-407 236-564 (630)
62 KOG0346 RNA helicase [RNA proc 100.0 4.7E-31 1E-35 262.9 20.2 335 28-412 20-413 (569)
63 PRK10689 transcription-repair 100.0 1.3E-30 2.8E-35 304.9 27.5 304 50-408 600-918 (1147)
64 KOG0354 DEAD-box like helicase 100.0 1.9E-30 4.2E-35 280.2 23.8 337 47-408 59-528 (746)
65 KOG0327 Translation initiation 100.0 4.4E-31 9.6E-36 260.8 15.4 338 25-413 24-374 (397)
66 KOG0341 DEAD-box protein abstr 100.0 4E-31 8.7E-36 259.0 9.5 347 18-411 162-530 (610)
67 KOG4284 DEAD box protein [Tran 100.0 7.6E-30 1.7E-34 264.4 16.7 338 25-408 23-378 (980)
68 TIGR01587 cas3_core CRISPR-ass 100.0 5E-29 1.1E-33 264.5 23.3 299 67-409 1-336 (358)
69 KOG0951 RNA helicase BRR2, DEA 100.0 1.2E-28 2.7E-33 271.4 26.0 476 51-555 310-889 (1674)
70 TIGR03158 cas3_cyano CRISPR-as 100.0 5.3E-28 1.2E-32 254.1 29.5 290 54-395 1-357 (357)
71 COG1205 Distinct helicase fami 100.0 2.2E-28 4.8E-33 278.7 25.5 329 44-409 64-422 (851)
72 KOG0334 RNA helicase [RNA proc 100.0 5.1E-29 1.1E-33 274.2 17.7 334 28-410 366-721 (997)
73 KOG0344 ATP-dependent RNA heli 100.0 8.5E-29 1.8E-33 256.8 15.8 322 40-412 149-498 (593)
74 PRK13766 Hef nuclease; Provisi 100.0 2.8E-27 6.2E-32 275.2 28.4 333 48-410 13-480 (773)
75 PHA02558 uvsW UvsW helicase; P 100.0 3.1E-27 6.8E-32 259.5 25.5 310 49-401 113-443 (501)
76 KOG0337 ATP-dependent RNA heli 100.0 2.4E-28 5.3E-33 242.5 11.9 337 26-410 20-369 (529)
77 COG4581 Superfamily II RNA hel 99.9 1.7E-26 3.8E-31 259.1 24.1 333 46-408 115-536 (1041)
78 KOG0947 Cytoplasmic exosomal R 99.9 7E-27 1.5E-31 252.0 18.9 323 48-408 295-722 (1248)
79 PRK09401 reverse gyrase; Revie 99.9 4.3E-26 9.4E-31 267.7 23.0 275 48-364 78-410 (1176)
80 KOG0948 Nuclear exosomal RNA h 99.9 6.4E-27 1.4E-31 246.5 12.1 323 49-408 128-538 (1041)
81 KOG0352 ATP-dependent DNA heli 99.9 1.3E-26 2.9E-31 230.1 12.8 309 55-413 26-366 (641)
82 TIGR03714 secA2 accessory Sec 99.9 3.5E-24 7.5E-29 236.7 28.5 327 46-410 64-538 (762)
83 PRK12898 secA preprotein trans 99.9 3.9E-24 8.4E-29 233.8 27.3 106 276-410 473-587 (656)
84 PRK09200 preprotein translocas 99.9 1.8E-24 3.8E-29 241.4 25.1 107 275-410 427-542 (790)
85 COG4098 comFA Superfamily II D 99.9 6.3E-24 1.4E-28 206.4 25.0 284 56-397 107-401 (441)
86 KOG0351 ATP-dependent DNA heli 99.9 1.6E-25 3.5E-30 253.2 16.2 313 51-413 265-596 (941)
87 TIGR00603 rad25 DNA repair hel 99.9 2.3E-24 5E-29 238.2 23.7 317 49-413 254-611 (732)
88 PRK14701 reverse gyrase; Provi 99.9 1.1E-24 2.3E-29 261.1 21.0 314 50-409 79-456 (1638)
89 PRK05580 primosome assembly pr 99.9 6.4E-24 1.4E-28 239.7 25.2 316 48-404 142-544 (679)
90 TIGR00595 priA primosomal prot 99.9 3.3E-24 7.1E-29 233.7 19.8 294 69-403 1-375 (505)
91 TIGR00963 secA preprotein tran 99.9 1E-23 2.2E-28 231.5 23.3 119 261-410 392-518 (745)
92 TIGR01054 rgy reverse gyrase. 99.9 1.3E-23 2.8E-28 247.2 25.9 278 47-366 75-411 (1171)
93 PRK09694 helicase Cas3; Provis 99.9 8.8E-23 1.9E-27 232.0 29.5 317 49-397 285-662 (878)
94 COG1200 RecG RecG-like helicas 99.9 2.3E-23 5.1E-28 222.3 21.7 310 46-410 256-592 (677)
95 KOG0950 DNA polymerase theta/e 99.9 1.1E-23 2.4E-28 229.4 18.4 335 49-410 222-612 (1008)
96 COG1061 SSL2 DNA or RNA helica 99.9 1.4E-22 3E-27 218.4 22.4 308 45-397 31-376 (442)
97 KOG0329 ATP-dependent RNA heli 99.9 2.6E-23 5.6E-28 193.8 13.7 315 14-411 28-357 (387)
98 KOG0353 ATP-dependent DNA heli 99.9 4.1E-22 8.9E-27 195.3 20.1 326 29-410 73-468 (695)
99 PRK11448 hsdR type I restricti 99.9 8.1E-22 1.8E-26 230.5 25.3 333 50-407 413-813 (1123)
100 COG1197 Mfd Transcription-repa 99.9 1.6E-21 3.5E-26 219.5 24.7 289 67-410 617-914 (1139)
101 PRK04914 ATP-dependent helicas 99.8 2.8E-19 6.1E-24 204.8 23.7 117 267-409 484-605 (956)
102 KOG0949 Predicted helicase, DE 99.8 2.5E-19 5.4E-24 194.4 19.4 164 49-216 510-682 (1330)
103 PRK12906 secA preprotein trans 99.8 5.3E-19 1.2E-23 196.2 21.6 117 262-409 428-553 (796)
104 PRK12904 preprotein translocas 99.8 9.6E-19 2.1E-23 195.0 22.6 134 261-407 417-571 (830)
105 PRK13104 secA preprotein trans 99.8 9.4E-19 2E-23 195.2 22.4 124 47-174 77-212 (896)
106 KOG0349 Putative DEAD-box RNA 99.8 3.4E-19 7.5E-24 177.7 12.8 289 95-407 287-613 (725)
107 KOG0921 Dosage compensation co 99.8 6.1E-21 1.3E-25 204.8 -1.5 442 47-503 403-876 (1282)
108 COG1203 CRISPR-associated heli 99.8 7E-18 1.5E-22 192.7 21.0 313 50-408 195-549 (733)
109 PRK13107 preprotein translocas 99.8 9.3E-17 2E-21 178.8 23.3 80 260-352 435-514 (908)
110 COG1198 PriA Primosomal protei 99.7 3.2E-17 7E-22 181.4 19.1 320 48-403 196-597 (730)
111 COG4096 HsdR Type I site-speci 99.7 2.7E-16 5.8E-21 170.7 23.7 340 58-437 177-575 (875)
112 PF04408 HA2: Helicase associa 99.7 1E-17 2.2E-22 142.6 8.8 91 459-550 1-102 (102)
113 cd00268 DEADc DEAD-box helicas 99.7 1.4E-16 2.9E-21 155.1 16.3 177 29-207 1-185 (203)
114 KOG0953 Mitochondrial RNA heli 99.7 3.4E-16 7.4E-21 161.6 17.4 275 65-409 191-477 (700)
115 PRK12899 secA preprotein trans 99.7 3.1E-15 6.7E-20 167.0 25.8 124 47-174 87-225 (970)
116 PF00270 DEAD: DEAD/DEAH box h 99.7 3.2E-16 6.9E-21 147.7 12.0 156 53-212 2-167 (169)
117 TIGR00348 hsdR type I site-spe 99.7 9E-15 2E-19 165.6 24.8 310 47-400 236-638 (667)
118 KOG4150 Predicted ATP-dependen 99.6 1.3E-15 2.8E-20 157.0 11.7 318 49-403 285-634 (1034)
119 COG0556 UvrB Helicase subunit 99.6 5.9E-14 1.3E-18 145.0 23.1 169 196-407 386-555 (663)
120 smart00847 HA2 Helicase associ 99.6 8.7E-16 1.9E-20 128.8 8.0 90 459-550 1-92 (92)
121 TIGR01407 dinG_rel DnaQ family 99.6 1.6E-13 3.5E-18 160.3 28.7 139 257-405 656-811 (850)
122 PRK12900 secA preprotein trans 99.6 2.2E-14 4.8E-19 160.6 19.8 107 275-410 597-712 (1025)
123 COG1110 Reverse gyrase [DNA re 99.6 2.7E-13 5.9E-18 149.7 26.2 277 46-366 78-419 (1187)
124 TIGR00631 uvrb excinuclease AB 99.6 1.1E-14 2.5E-19 162.8 15.6 114 274-409 440-553 (655)
125 PLN03142 Probable chromatin-re 99.6 2.5E-13 5.4E-18 156.8 23.5 111 275-412 486-602 (1033)
126 cd00079 HELICc Helicase superf 99.5 3.2E-14 7E-19 127.7 10.5 103 275-404 27-130 (131)
127 PRK05298 excinuclease ABC subu 99.5 1E-13 2.2E-18 156.4 14.9 112 275-408 445-556 (652)
128 PRK12326 preprotein translocas 99.5 3.1E-12 6.7E-17 139.8 24.9 118 259-407 412-545 (764)
129 PRK07246 bifunctional ATP-depe 99.5 5.6E-12 1.2E-16 145.4 27.8 134 257-405 630-780 (820)
130 KOG1123 RNA polymerase II tran 99.5 1.1E-13 2.4E-18 141.3 11.0 316 51-411 303-655 (776)
131 PF00271 Helicase_C: Helicase 99.5 4E-14 8.6E-19 114.8 4.7 71 309-397 7-77 (78)
132 PRK13103 secA preprotein trans 99.4 1.4E-11 3E-16 138.1 20.6 120 53-174 83-212 (913)
133 KOG0951 RNA helicase BRR2, DEA 99.4 9.6E-12 2.1E-16 139.4 18.7 306 63-407 1157-1492(1674)
134 cd00046 DEXDc DEAD-like helica 99.4 5.4E-12 1.2E-16 114.3 14.0 138 66-206 1-144 (144)
135 TIGR02562 cas3_yersinia CRISPR 99.4 4.4E-11 9.6E-16 135.1 23.4 96 279-398 759-880 (1110)
136 PRK08074 bifunctional ATP-depe 99.4 1.6E-10 3.6E-15 135.8 28.7 141 257-405 734-890 (928)
137 smart00487 DEXDc DEAD-like hel 99.4 6.9E-12 1.5E-16 120.8 13.5 164 49-214 7-180 (201)
138 PRK12903 secA preprotein trans 99.4 6.7E-11 1.5E-15 131.2 22.6 116 260-407 412-537 (925)
139 smart00490 HELICc helicase sup 99.3 2.5E-12 5.4E-17 105.0 5.4 71 309-397 11-81 (82)
140 PF07652 Flavi_DEAD: Flaviviru 99.3 4.2E-11 9.1E-16 105.2 13.0 136 63-208 2-138 (148)
141 CHL00122 secA preprotein trans 99.3 2.7E-10 6E-15 127.2 22.7 118 53-174 77-206 (870)
142 KOG0385 Chromatin remodeling c 99.3 2.7E-10 5.8E-15 122.6 20.5 320 61-413 182-603 (971)
143 PRK14873 primosome assembly pr 99.3 1.4E-10 3E-15 129.8 18.2 138 69-214 164-311 (665)
144 PF04851 ResIII: Type III rest 99.3 8.2E-11 1.8E-15 112.2 13.9 148 49-207 2-183 (184)
145 TIGR03117 cas_csf4 CRISPR-asso 99.2 2.3E-08 4.9E-13 110.9 30.6 137 259-408 454-616 (636)
146 PRK12902 secA preprotein trans 99.2 2.4E-09 5.2E-14 119.6 22.8 124 47-174 80-215 (939)
147 PRK11747 dinG ATP-dependent DN 99.1 7.1E-09 1.5E-13 118.3 24.3 135 257-405 517-671 (697)
148 PF02399 Herpes_ori_bp: Origin 99.1 1.1E-08 2.3E-13 113.4 22.2 308 63-412 47-391 (824)
149 KOG0384 Chromodomain-helicase 99.1 4.3E-09 9.4E-14 118.8 18.7 116 274-413 697-815 (1373)
150 COG1199 DinG Rad3-related DNA 99.0 7.3E-08 1.6E-12 110.7 24.7 136 258-405 462-614 (654)
151 KOG0387 Transcription-coupled 99.0 8.5E-08 1.8E-12 104.2 23.0 116 275-413 545-662 (923)
152 COG4889 Predicted helicase [Ge 98.9 1.1E-09 2.4E-14 119.0 6.4 108 278-403 462-578 (1518)
153 PRK12901 secA preprotein trans 98.9 7.1E-08 1.5E-12 109.2 20.5 117 260-407 614-739 (1112)
154 KOG0390 DNA repair protein, SN 98.7 2.4E-06 5.2E-11 95.3 23.3 106 282-413 600-711 (776)
155 KOG1000 Chromatin remodeling p 98.7 9.3E-07 2E-11 91.4 18.1 80 274-362 490-571 (689)
156 KOG0392 SNF2 family DNA-depend 98.6 4.7E-06 1E-10 94.7 20.1 117 276-413 1340-1458(1549)
157 KOG1002 Nucleotide excision re 98.5 6.1E-06 1.3E-10 85.4 18.4 166 29-206 161-354 (791)
158 COG0653 SecA Preprotein transl 98.4 9.9E-06 2.1E-10 90.9 16.4 123 48-174 76-210 (822)
159 COG0610 Type I site-specific r 98.3 2.3E-05 5E-10 92.3 19.8 133 66-206 274-413 (962)
160 KOG0389 SNF2 family DNA-depend 98.3 7.4E-06 1.6E-10 89.4 14.3 115 275-413 776-892 (941)
161 PF00448 SRP54: SRP54-type pro 98.3 5.4E-06 1.2E-10 79.4 11.8 128 66-211 2-130 (196)
162 PF07717 OB_NTP_bind: Oligonuc 98.3 6.4E-07 1.4E-11 78.1 4.3 65 584-651 1-85 (114)
163 KOG0952 DNA/RNA helicase MER3/ 98.3 4.9E-07 1.1E-11 101.2 3.5 170 47-219 909-1107(1230)
164 PF00176 SNF2_N: SNF2 family N 98.2 6.4E-06 1.4E-10 85.0 10.4 132 64-206 24-172 (299)
165 PF13604 AAA_30: AAA domain; P 98.1 1.6E-05 3.4E-10 76.5 10.3 126 52-205 3-130 (196)
166 TIGR02768 TraA_Ti Ti-type conj 98.1 0.0012 2.6E-08 76.3 26.4 123 48-203 350-474 (744)
167 PF13401 AAA_22: AAA domain; P 98.1 3.2E-06 6.9E-11 75.6 3.8 115 63-204 2-124 (131)
168 COG1419 FlhF Flagellar GTP-bin 98.0 0.00011 2.5E-09 76.1 15.3 129 65-217 203-334 (407)
169 PRK12723 flagellar biosynthesi 98.0 0.00013 2.9E-09 76.9 15.1 130 65-218 174-309 (388)
170 PRK11889 flhF flagellar biosyn 98.0 0.00015 3.2E-09 75.4 14.7 123 66-210 242-366 (436)
171 PRK14722 flhF flagellar biosyn 97.9 0.0001 2.2E-09 77.1 12.6 126 63-212 135-263 (374)
172 PRK10536 hypothetical protein; 97.9 4.4E-05 9.6E-10 74.9 9.0 58 47-104 56-113 (262)
173 PRK13889 conjugal transfer rel 97.9 0.0024 5.1E-08 75.1 23.5 126 47-205 343-470 (988)
174 TIGR00596 rad1 DNA repair prot 97.8 0.00013 2.7E-09 83.9 11.6 66 141-207 7-73 (814)
175 PRK14974 cell division protein 97.8 0.00023 5E-09 73.7 12.4 122 66-207 141-265 (336)
176 PRK05703 flhF flagellar biosyn 97.8 0.00059 1.3E-08 73.4 15.2 127 65-215 221-351 (424)
177 PRK12726 flagellar biosynthesi 97.8 0.0003 6.6E-09 72.9 12.3 132 63-216 204-337 (407)
178 TIGR01448 recD_rel helicase, p 97.7 0.0003 6.4E-09 81.0 13.5 125 47-205 320-452 (720)
179 TIGR00604 rad3 DNA repair heli 97.7 0.0003 6.4E-09 81.4 13.1 194 198-399 443-663 (705)
180 PF06862 DUF1253: Protein of u 97.7 0.0031 6.7E-08 67.1 19.5 245 141-413 131-419 (442)
181 cd00009 AAA The AAA+ (ATPases 97.7 0.00075 1.6E-08 60.9 13.0 47 55-102 7-55 (151)
182 KOG0386 Chromatin remodeling c 97.7 2.3E-05 4.9E-10 87.9 3.0 112 275-413 725-842 (1157)
183 PF13245 AAA_19: Part of AAA d 97.7 0.00018 3.8E-09 57.3 7.2 57 58-115 3-62 (76)
184 PF07517 SecA_DEAD: SecA DEAD- 97.6 0.00024 5.2E-09 70.9 9.5 123 49-175 76-208 (266)
185 PRK13826 Dtr system oriT relax 97.6 0.019 4.1E-07 68.1 26.3 125 48-205 379-505 (1102)
186 KOG1803 DNA helicase [Replicat 97.6 0.00012 2.5E-09 78.6 6.9 62 51-114 186-248 (649)
187 TIGR01447 recD exodeoxyribonuc 97.6 0.00063 1.4E-08 76.1 12.6 137 53-205 148-295 (586)
188 PRK12727 flagellar biosynthesi 97.5 0.00094 2E-08 72.3 13.0 129 63-215 348-478 (559)
189 PF09848 DUF2075: Uncharacteri 97.5 0.00042 9E-09 73.3 10.4 90 66-174 2-93 (352)
190 TIGR02760 TraI_TIGR conjugativ 97.5 0.016 3.5E-07 73.7 25.3 248 48-334 427-685 (1960)
191 PF13872 AAA_34: P-loop contai 97.5 0.00076 1.6E-08 67.6 10.2 139 65-206 62-220 (303)
192 PRK10875 recD exonuclease V su 97.5 0.00094 2E-08 74.9 12.0 137 53-205 155-301 (615)
193 PRK12724 flagellar biosynthesi 97.4 0.0026 5.7E-08 67.1 14.5 123 65-212 223-350 (432)
194 PRK06526 transposase; Provisio 97.4 0.00079 1.7E-08 67.3 10.2 30 60-89 93-122 (254)
195 PRK06731 flhF flagellar biosyn 97.4 0.0031 6.8E-08 63.3 14.3 129 64-214 74-204 (270)
196 smart00382 AAA ATPases associa 97.4 0.00095 2.1E-08 59.7 9.3 39 65-104 2-40 (148)
197 PRK14721 flhF flagellar biosyn 97.4 0.0026 5.6E-08 67.8 13.7 128 64-215 190-320 (420)
198 PRK14723 flhF flagellar biosyn 97.3 0.002 4.3E-08 73.1 13.0 125 65-213 185-312 (767)
199 TIGR03015 pepcterm_ATPase puta 97.3 0.0012 2.6E-08 66.9 10.3 28 62-89 39-67 (269)
200 KOG4439 RNA polymerase II tran 97.3 0.0038 8.2E-08 68.1 13.8 91 308-413 769-862 (901)
201 PRK08181 transposase; Validate 97.3 0.0029 6.3E-08 63.6 12.4 118 61-217 102-219 (269)
202 PF12340 DUF3638: Protein of u 97.3 0.0026 5.7E-08 61.4 11.4 127 42-175 15-183 (229)
203 PF05970 PIF1: PIF1-like helic 97.3 0.0013 2.8E-08 69.7 10.0 58 52-111 3-66 (364)
204 PRK10416 signal recognition pa 97.3 0.003 6.5E-08 65.3 12.2 128 65-211 114-249 (318)
205 PRK04296 thymidine kinase; Pro 97.2 0.0039 8.5E-08 59.6 12.0 37 65-102 2-38 (190)
206 PRK06835 DNA replication prote 97.2 0.003 6.5E-08 65.5 11.7 37 64-101 182-218 (329)
207 PF05729 NACHT: NACHT domain 97.2 0.0015 3.4E-08 60.5 8.7 127 66-218 1-142 (166)
208 PF13173 AAA_14: AAA domain 97.2 0.0041 8.8E-08 55.3 10.6 27 64-90 1-27 (128)
209 PF13307 Helicase_C_2: Helicas 97.2 0.00032 7E-09 65.6 3.6 120 274-402 7-142 (167)
210 PRK06995 flhF flagellar biosyn 97.1 0.0072 1.6E-07 65.5 13.7 127 64-214 255-384 (484)
211 KOG0391 SNF2 family DNA-depend 97.1 0.0038 8.2E-08 71.5 11.1 116 274-413 1274-1391(1958)
212 PF13086 AAA_11: AAA domain; P 97.1 0.0019 4.1E-08 63.7 8.2 66 51-117 2-75 (236)
213 PRK14956 DNA polymerase III su 97.1 0.0032 6.9E-08 67.8 10.2 47 159-209 116-162 (484)
214 TIGR00064 ftsY signal recognit 97.1 0.0086 1.9E-07 60.6 12.9 127 65-211 72-207 (272)
215 PRK07952 DNA replication prote 97.0 0.022 4.7E-07 56.5 15.1 115 66-217 100-215 (244)
216 PRK08727 hypothetical protein; 97.0 0.0051 1.1E-07 60.9 10.5 36 65-101 41-76 (233)
217 TIGR01425 SRP54_euk signal rec 97.0 0.0069 1.5E-07 64.6 11.9 131 66-216 101-236 (429)
218 smart00488 DEXDc2 DEAD-like he 96.9 0.0024 5.2E-08 65.3 7.8 58 52-109 10-76 (289)
219 smart00489 DEXDc3 DEAD-like he 96.9 0.0024 5.2E-08 65.3 7.8 58 52-109 10-76 (289)
220 PRK00771 signal recognition pa 96.9 0.017 3.8E-07 62.1 14.4 121 65-207 95-218 (437)
221 PRK12377 putative replication 96.9 0.037 8.1E-07 55.0 15.7 37 64-101 100-136 (248)
222 PRK07003 DNA polymerase III su 96.9 0.0078 1.7E-07 67.8 11.7 50 152-203 107-156 (830)
223 PRK10867 signal recognition pa 96.9 0.01 2.2E-07 63.8 12.3 123 66-206 101-225 (433)
224 PRK08116 hypothetical protein; 96.8 0.03 6.5E-07 56.6 14.7 36 65-101 114-149 (268)
225 TIGR03499 FlhF flagellar biosy 96.8 0.0065 1.4E-07 61.9 9.6 86 65-173 194-281 (282)
226 KOG2340 Uncharacterized conser 96.8 0.027 5.9E-07 59.7 13.9 111 275-411 551-670 (698)
227 PRK07994 DNA polymerase III su 96.8 0.0067 1.5E-07 68.1 10.1 49 152-202 107-155 (647)
228 PRK14960 DNA polymerase III su 96.7 0.0075 1.6E-07 67.1 9.7 43 159-203 113-155 (702)
229 PRK06893 DNA replication initi 96.7 0.011 2.3E-07 58.4 10.1 37 64-101 38-74 (229)
230 PRK15483 type III restriction- 96.7 0.014 3E-07 67.8 12.0 45 335-397 501-545 (986)
231 PRK08691 DNA polymerase III su 96.7 0.015 3.2E-07 65.4 11.8 44 158-203 113-156 (709)
232 cd03115 SRP The signal recogni 96.7 0.017 3.6E-07 54.3 10.6 123 67-208 2-126 (173)
233 PRK05642 DNA replication initi 96.6 0.013 2.7E-07 58.1 10.2 35 66-101 46-80 (234)
234 COG1484 DnaC DNA replication p 96.6 0.033 7.2E-07 55.7 13.1 122 55-217 95-219 (254)
235 PRK09183 transposase/IS protei 96.6 0.024 5.2E-07 57.0 11.8 39 62-101 99-137 (259)
236 PRK09112 DNA polymerase III su 96.6 0.026 5.6E-07 59.2 12.4 140 56-203 33-178 (351)
237 cd01120 RecA-like_NTPases RecA 96.6 0.013 2.9E-07 53.9 9.3 39 67-106 1-39 (165)
238 PRK12323 DNA polymerase III su 96.5 0.0087 1.9E-07 66.5 8.9 50 152-203 112-161 (700)
239 TIGR03420 DnaA_homol_Hda DnaA 96.5 0.015 3.2E-07 57.3 10.0 27 63-89 36-62 (226)
240 PRK14949 DNA polymerase III su 96.5 0.015 3.3E-07 66.8 11.0 46 155-202 110-155 (944)
241 PF01695 IstB_IS21: IstB-like 96.5 0.0054 1.2E-07 57.9 6.4 120 59-218 41-161 (178)
242 PRK08903 DnaA regulatory inact 96.5 0.015 3.2E-07 57.4 9.8 37 64-101 41-77 (227)
243 PF02562 PhoH: PhoH-like prote 96.5 0.0031 6.7E-08 60.4 4.7 55 49-103 3-58 (205)
244 TIGR00959 ffh signal recogniti 96.5 0.027 5.9E-07 60.5 12.1 123 66-206 100-224 (428)
245 PRK14958 DNA polymerase III su 96.5 0.018 3.9E-07 63.6 11.0 44 158-203 113-156 (509)
246 PRK00411 cdc6 cell division co 96.4 0.017 3.7E-07 62.1 10.6 24 66-89 56-79 (394)
247 PRK12402 replication factor C 96.4 0.024 5.3E-07 59.5 11.5 35 55-89 24-60 (337)
248 PRK00149 dnaA chromosomal repl 96.4 0.022 4.8E-07 62.4 11.5 24 66-89 149-172 (450)
249 KOG2373 Predicted mitochondria 96.4 0.00075 1.6E-08 67.6 -0.4 109 59-174 267-384 (514)
250 PRK14964 DNA polymerase III su 96.4 0.027 5.9E-07 61.4 11.4 49 153-203 105-153 (491)
251 PRK08084 DNA replication initi 96.4 0.01 2.2E-07 58.8 7.6 37 64-101 44-80 (235)
252 cd03228 ABCC_MRP_Like The MRP 96.3 0.026 5.6E-07 52.9 9.9 133 62-211 25-158 (171)
253 KOG1802 RNA helicase nonsense 96.3 0.0064 1.4E-07 65.9 6.2 72 51-124 411-482 (935)
254 KOG0989 Replication factor C, 96.3 0.012 2.6E-07 58.6 7.5 42 162-205 127-168 (346)
255 PRK14957 DNA polymerase III su 96.3 0.017 3.7E-07 63.8 9.8 51 151-203 106-156 (546)
256 cd03247 ABCC_cytochrome_bd The 96.3 0.018 3.9E-07 54.4 8.8 127 62-203 25-154 (178)
257 KOG0388 SNF2 family DNA-depend 96.3 0.017 3.8E-07 63.1 9.2 116 274-413 1042-1158(1185)
258 PRK08939 primosomal protein Dn 96.3 0.095 2.1E-06 54.0 14.5 115 64-216 155-270 (306)
259 PRK14961 DNA polymerase III su 96.3 0.024 5.2E-07 60.2 10.4 50 152-203 107-156 (363)
260 cd03221 ABCF_EF-3 ABCF_EF-3 E 96.3 0.024 5.1E-07 51.5 8.9 94 62-193 23-116 (144)
261 cd00267 ABC_ATPase ABC (ATP-bi 96.3 0.02 4.4E-07 52.7 8.6 123 63-214 23-146 (157)
262 COG0552 FtsY Signal recognitio 96.3 0.054 1.2E-06 55.0 11.9 134 66-218 140-283 (340)
263 TIGR00362 DnaA chromosomal rep 96.2 0.028 6.1E-07 60.7 10.8 36 66-101 137-173 (405)
264 PRK06645 DNA polymerase III su 96.2 0.024 5.2E-07 62.2 10.2 55 152-210 116-170 (507)
265 PRK06921 hypothetical protein; 96.2 0.092 2E-06 53.0 13.7 38 64-101 116-153 (266)
266 PRK14087 dnaA chromosomal repl 96.1 0.058 1.3E-06 58.8 12.4 37 66-102 142-179 (450)
267 PF05621 TniB: Bacterial TniB 96.1 0.035 7.5E-07 56.0 9.7 70 52-122 39-123 (302)
268 TIGR02928 orc1/cdc6 family rep 96.1 0.026 5.7E-07 60.0 9.4 23 66-88 41-63 (365)
269 PRK07471 DNA polymerase III su 96.1 0.041 8.9E-07 58.1 10.6 63 142-206 119-181 (365)
270 cd03216 ABC_Carb_Monos_I This 96.0 0.043 9.3E-07 51.0 9.5 127 62-216 23-150 (163)
271 PRK14952 DNA polymerase III su 96.0 0.042 9E-07 61.4 10.8 49 153-203 107-155 (584)
272 PF13177 DNA_pol3_delta2: DNA 96.0 0.029 6.3E-07 52.0 8.2 131 58-206 9-142 (162)
273 KOG1805 DNA replication helica 96.0 0.01 2.2E-07 67.3 5.9 62 53-116 673-734 (1100)
274 TIGR00678 holB DNA polymerase 96.0 0.054 1.2E-06 51.6 10.2 48 153-202 85-132 (188)
275 cd03246 ABCC_Protease_Secretio 96.0 0.032 6.9E-07 52.4 8.4 127 62-203 25-153 (173)
276 COG2804 PulE Type II secretory 96.0 0.039 8.4E-07 59.2 9.7 42 49-90 240-283 (500)
277 PF00004 AAA: ATPase family as 96.0 0.0092 2E-07 52.9 4.5 22 68-89 1-22 (132)
278 KOG2228 Origin recognition com 95.9 0.17 3.7E-06 51.3 13.4 130 64-210 48-185 (408)
279 PRK14962 DNA polymerase III su 95.9 0.036 7.9E-07 60.5 9.6 32 58-89 26-60 (472)
280 PRK14086 dnaA chromosomal repl 95.9 0.13 2.8E-06 57.4 13.8 36 66-101 315-351 (617)
281 PF05127 Helicase_RecD: Helica 95.9 0.0043 9.4E-08 57.8 2.1 117 69-206 1-123 (177)
282 PRK14959 DNA polymerase III su 95.9 0.053 1.1E-06 60.6 10.8 34 56-89 26-62 (624)
283 PTZ00293 thymidine kinase; Pro 95.9 0.046 1E-06 52.5 9.0 39 64-103 3-41 (211)
284 PRK07764 DNA polymerase III su 95.9 0.048 1E-06 63.5 10.8 45 157-203 113-157 (824)
285 PF00308 Bac_DnaA: Bacterial d 95.9 0.034 7.4E-07 54.4 8.3 36 66-101 35-71 (219)
286 PRK05896 DNA polymerase III su 95.9 0.06 1.3E-06 59.8 11.1 51 151-203 106-156 (605)
287 TIGR02782 TrbB_P P-type conjug 95.8 0.022 4.8E-07 58.5 7.3 53 54-106 121-174 (299)
288 PRK14965 DNA polymerase III su 95.8 0.06 1.3E-06 60.6 11.3 50 152-203 107-156 (576)
289 PRK14955 DNA polymerase III su 95.8 0.054 1.2E-06 58.2 10.6 33 57-89 27-62 (397)
290 cd03214 ABC_Iron-Siderophores_ 95.8 0.021 4.5E-07 54.1 6.6 134 62-215 22-165 (180)
291 PTZ00112 origin recognition co 95.8 0.071 1.5E-06 60.9 11.5 20 67-86 783-802 (1164)
292 COG1702 PhoH Phosphate starvat 95.8 0.013 2.9E-07 59.4 5.3 56 48-103 126-181 (348)
293 PRK06067 flagellar accessory p 95.8 0.046 9.9E-07 54.2 9.1 42 62-104 22-63 (234)
294 cd03223 ABCD_peroxisomal_ALDP 95.8 0.038 8.2E-07 51.5 8.0 27 62-88 24-50 (166)
295 PRK14969 DNA polymerase III su 95.8 0.066 1.4E-06 59.5 11.1 50 152-203 107-156 (527)
296 cd03238 ABC_UvrA The excision 95.8 0.077 1.7E-06 49.9 10.0 25 62-86 18-42 (176)
297 COG2256 MGS1 ATPase related to 95.8 0.051 1.1E-06 56.3 9.3 30 59-88 40-71 (436)
298 TIGR00376 DNA helicase, putati 95.7 0.025 5.4E-07 64.4 7.8 66 50-117 157-223 (637)
299 PRK13833 conjugal transfer pro 95.7 0.024 5.2E-07 58.5 7.0 33 56-88 135-167 (323)
300 cd03230 ABC_DR_subfamily_A Thi 95.7 0.056 1.2E-06 50.7 8.9 136 62-214 23-161 (173)
301 TIGR00604 rad3 DNA repair heli 95.7 0.02 4.3E-07 66.4 7.0 59 51-109 11-75 (705)
302 PRK14951 DNA polymerase III su 95.7 0.057 1.2E-06 60.7 10.2 50 152-203 112-161 (618)
303 PRK14963 DNA polymerase III su 95.7 0.057 1.2E-06 59.5 10.1 46 155-202 107-152 (504)
304 PHA02544 44 clamp loader, smal 95.6 0.091 2E-06 54.6 11.2 33 56-88 31-66 (316)
305 PRK14950 DNA polymerase III su 95.6 0.065 1.4E-06 60.6 10.5 47 153-201 109-155 (585)
306 PRK12422 chromosomal replicati 95.6 0.054 1.2E-06 58.8 9.4 35 66-101 142-176 (445)
307 PRK09111 DNA polymerase III su 95.6 0.093 2E-06 59.0 11.5 50 152-203 120-169 (598)
308 PRK14088 dnaA chromosomal repl 95.6 0.17 3.6E-06 55.1 13.1 36 66-101 131-167 (440)
309 PRK05707 DNA polymerase III su 95.6 0.084 1.8E-06 54.9 10.3 52 150-203 92-143 (328)
310 PRK08451 DNA polymerase III su 95.5 0.1 2.3E-06 57.5 11.4 43 159-203 112-154 (535)
311 COG0541 Ffh Signal recognition 95.5 0.15 3.3E-06 53.5 11.9 137 66-219 101-239 (451)
312 TIGR02881 spore_V_K stage V sp 95.5 0.081 1.7E-06 53.4 9.9 21 66-86 43-63 (261)
313 PF01637 Arch_ATPase: Archaeal 95.5 0.052 1.1E-06 53.3 8.3 34 56-89 9-44 (234)
314 PRK14948 DNA polymerase III su 95.5 0.074 1.6E-06 60.2 10.3 57 151-211 108-164 (620)
315 cd03222 ABC_RNaseL_inhibitor T 95.5 0.25 5.5E-06 46.4 12.4 96 61-192 21-116 (177)
316 PHA03333 putative ATPase subun 95.5 0.45 9.7E-06 53.2 15.8 150 56-217 179-343 (752)
317 COG2909 MalT ATP-dependent tra 95.5 0.067 1.4E-06 60.5 9.6 145 52-206 21-170 (894)
318 COG3267 ExeA Type II secretory 95.5 0.18 3.9E-06 49.3 11.3 61 57-119 42-103 (269)
319 COG1474 CDC6 Cdc6-related prot 95.5 0.097 2.1E-06 55.3 10.4 22 66-87 43-64 (366)
320 PF00437 T2SE: Type II/IV secr 95.4 0.022 4.8E-07 57.8 5.4 46 59-105 121-166 (270)
321 TIGR02868 CydC thiol reductant 95.4 0.022 4.8E-07 63.9 5.9 28 62-89 358-385 (529)
322 PRK13894 conjugal transfer ATP 95.3 0.037 7.9E-07 57.3 6.6 53 54-106 137-190 (319)
323 PF00580 UvrD-helicase: UvrD/R 95.3 0.036 7.9E-07 57.3 6.8 65 52-119 2-69 (315)
324 COG1444 Predicted P-loop ATPas 95.3 0.39 8.4E-06 54.6 15.0 147 40-206 205-356 (758)
325 PRK13851 type IV secretion sys 95.3 0.033 7.2E-07 58.1 6.3 46 58-105 155-200 (344)
326 cd03229 ABC_Class3 This class 95.3 0.071 1.5E-06 50.3 8.0 139 62-214 23-167 (178)
327 PRK07940 DNA polymerase III su 95.2 0.16 3.4E-06 54.2 11.3 51 152-205 105-155 (394)
328 PRK09087 hypothetical protein; 95.2 0.17 3.7E-06 49.7 10.8 22 65-86 44-65 (226)
329 CHL00181 cbbX CbbX; Provisiona 95.2 0.24 5.3E-06 50.5 12.3 23 65-87 59-81 (287)
330 COG1875 NYN ribonuclease and A 95.2 0.099 2.1E-06 53.5 9.0 37 47-83 225-263 (436)
331 COG0553 HepA Superfamily II DN 95.2 0.054 1.2E-06 64.8 8.6 112 278-413 713-826 (866)
332 PLN03025 replication factor C 95.2 0.2 4.3E-06 52.2 11.8 24 66-89 35-58 (319)
333 PF13555 AAA_29: P-loop contai 95.2 0.025 5.4E-07 42.7 3.6 22 65-86 23-44 (62)
334 PRK06620 hypothetical protein; 95.2 0.08 1.7E-06 51.5 8.2 20 66-85 45-64 (214)
335 COG3421 Uncharacterized protei 95.2 0.14 3E-06 55.5 10.3 135 70-207 2-166 (812)
336 TIGR02880 cbbX_cfxQ probable R 95.2 0.12 2.6E-06 52.7 9.9 36 66-101 59-97 (284)
337 cd01124 KaiC KaiC is a circadi 95.2 0.06 1.3E-06 51.1 7.2 36 67-103 1-36 (187)
338 cd01130 VirB11-like_ATPase Typ 95.1 0.053 1.1E-06 51.6 6.5 33 56-88 16-48 (186)
339 cd01131 PilT Pilus retraction 95.1 0.033 7.2E-07 53.6 5.1 38 66-103 2-39 (198)
340 PRK13709 conjugal transfer nic 95.0 0.2 4.3E-06 62.6 12.8 124 49-205 966-1099(1747)
341 PF05496 RuvB_N: Holliday junc 95.0 0.11 2.3E-06 50.3 8.3 24 66-89 51-74 (233)
342 PHA02533 17 large terminase pr 95.0 0.58 1.3E-05 52.0 15.3 155 48-215 57-219 (534)
343 PRK14712 conjugal transfer nic 95.0 0.21 4.4E-06 61.7 12.5 123 50-205 835-967 (1623)
344 COG3587 Restriction endonuclea 95.0 0.082 1.8E-06 59.5 8.4 52 335-404 483-537 (985)
345 COG4987 CydC ABC-type transpor 95.0 0.08 1.7E-06 56.9 8.0 45 161-206 489-533 (573)
346 PRK00440 rfc replication facto 95.0 0.38 8.3E-06 49.9 13.3 24 66-89 39-62 (319)
347 PRK08533 flagellar accessory p 95.0 0.15 3.3E-06 50.2 9.6 40 62-102 21-60 (230)
348 cd03239 ABC_SMC_head The struc 94.9 0.16 3.5E-06 47.9 9.2 42 162-204 114-156 (178)
349 PRK13900 type IV secretion sys 94.9 0.054 1.2E-06 56.4 6.4 31 59-89 154-184 (332)
350 COG1121 ZnuC ABC-type Mn/Zn tr 94.9 0.075 1.6E-06 52.4 6.9 70 146-217 139-208 (254)
351 cd03213 ABCG_EPDR ABCG transpo 94.8 0.093 2E-06 50.3 7.6 27 62-88 32-58 (194)
352 PRK05563 DNA polymerase III su 94.8 0.12 2.7E-06 57.9 9.5 39 152-192 107-145 (559)
353 TIGR02397 dnaX_nterm DNA polym 94.8 0.23 5E-06 52.5 11.1 49 151-201 104-152 (355)
354 TIGR02524 dot_icm_DotB Dot/Icm 94.8 0.053 1.1E-06 57.1 6.1 31 58-88 126-157 (358)
355 PRK14954 DNA polymerase III su 94.8 0.14 3E-06 57.8 9.7 48 154-203 117-164 (620)
356 TIGR01420 pilT_fam pilus retra 94.8 0.049 1.1E-06 57.2 5.8 48 58-105 114-162 (343)
357 PRK14970 DNA polymerase III su 94.7 0.16 3.5E-06 54.0 9.8 33 56-88 27-62 (367)
358 COG2812 DnaX DNA polymerase II 94.7 0.048 1E-06 59.5 5.6 54 151-208 106-159 (515)
359 cd03215 ABC_Carb_Monos_II This 94.7 0.14 3E-06 48.5 8.3 28 62-89 23-50 (182)
360 PRK04195 replication factor C 94.7 0.39 8.5E-06 53.1 13.0 25 65-89 39-63 (482)
361 TIGR03375 type_I_sec_LssB type 94.6 0.067 1.4E-06 62.2 7.1 55 148-203 603-657 (694)
362 PRK06647 DNA polymerase III su 94.6 0.14 3.1E-06 57.3 9.2 33 57-89 27-62 (563)
363 PHA00729 NTP-binding motif con 94.6 0.12 2.6E-06 50.2 7.5 31 58-88 8-40 (226)
364 COG0470 HolB ATPase involved i 94.6 0.17 3.7E-06 52.7 9.4 53 149-203 94-146 (325)
365 cd03369 ABCC_NFT1 Domain 2 of 94.5 0.066 1.4E-06 51.9 5.8 27 62-88 31-57 (207)
366 PRK14953 DNA polymerase III su 94.5 0.2 4.2E-06 55.2 9.9 49 151-201 106-154 (486)
367 KOG0780 Signal recognition par 94.5 0.32 6.9E-06 50.2 10.4 136 65-217 101-238 (483)
368 cd01393 recA_like RecA is a b 94.4 0.11 2.3E-06 51.2 7.1 43 62-104 16-63 (226)
369 TIGR02858 spore_III_AA stage I 94.4 0.5 1.1E-05 47.7 11.9 24 66-89 112-135 (270)
370 COG2805 PilT Tfp pilus assembl 94.4 0.076 1.6E-06 53.0 5.8 44 64-107 124-167 (353)
371 PF01443 Viral_helicase1: Vira 94.4 0.042 9E-07 54.3 4.2 22 68-89 1-22 (234)
372 COG1435 Tdk Thymidine kinase [ 94.4 0.14 3.1E-06 47.9 7.2 88 65-174 4-92 (201)
373 cd01129 PulE-GspE PulE/GspE Th 94.4 0.096 2.1E-06 52.8 6.7 34 56-89 70-104 (264)
374 COG1132 MdlB ABC-type multidru 94.4 0.14 3E-06 58.0 8.8 29 62-90 352-380 (567)
375 KOG0391 SNF2 family DNA-depend 94.4 0.21 4.6E-06 57.9 9.8 148 51-206 616-775 (1958)
376 PRK13342 recombination factor 94.3 0.11 2.4E-06 56.1 7.5 30 59-88 28-59 (413)
377 TIGR02760 TraI_TIGR conjugativ 94.3 0.25 5.4E-06 63.3 11.4 124 49-205 1018-1149(1960)
378 PRK07399 DNA polymerase III su 94.3 0.42 9E-06 49.5 11.2 59 143-204 103-161 (314)
379 COG1120 FepC ABC-type cobalami 94.2 0.11 2.3E-06 51.6 6.4 28 62-89 25-52 (258)
380 COG4555 NatA ABC-type Na+ tran 94.1 0.11 2.4E-06 48.8 5.9 51 162-213 149-201 (245)
381 PRK14971 DNA polymerase III su 94.1 0.31 6.6E-06 55.3 10.6 48 152-201 109-156 (614)
382 PRK11823 DNA repair protein Ra 94.1 0.092 2E-06 57.2 6.2 41 62-103 77-117 (446)
383 cd03233 ABC_PDR_domain1 The pl 94.1 0.25 5.5E-06 47.6 8.7 68 147-215 119-187 (202)
384 PHA03368 DNA packaging termina 94.0 0.98 2.1E-05 50.5 13.6 141 64-218 253-402 (738)
385 PRK05973 replicative DNA helic 93.9 0.061 1.3E-06 52.9 4.1 47 56-103 55-101 (237)
386 cd03289 ABCC_CFTR2 The CFTR su 93.9 0.19 4.2E-06 51.0 7.8 28 62-89 27-54 (275)
387 cd03249 ABC_MTABC3_MDL1_MDL2 M 93.9 0.18 3.9E-06 50.0 7.5 27 62-88 26-52 (238)
388 TIGR02974 phageshock_pspF psp 93.9 0.43 9.3E-06 49.8 10.5 36 53-89 10-45 (329)
389 TIGR02525 plasmid_TraJ plasmid 93.9 0.12 2.6E-06 54.5 6.4 27 63-89 147-173 (372)
390 PRK04841 transcriptional regul 93.9 0.3 6.6E-06 58.7 10.8 34 55-88 19-55 (903)
391 TIGR02788 VirB11 P-type DNA tr 93.8 0.11 2.5E-06 53.6 6.1 29 60-88 139-167 (308)
392 PF00931 NB-ARC: NB-ARC domain 93.8 0.17 3.6E-06 51.7 7.4 129 55-205 5-138 (287)
393 KOG2028 ATPase related to the 93.8 0.19 4.2E-06 51.3 7.3 31 59-89 154-186 (554)
394 PRK08058 DNA polymerase III su 93.8 0.4 8.8E-06 50.1 10.2 50 152-203 98-147 (329)
395 cd03226 ABC_cobalt_CbiO_domain 93.8 0.16 3.5E-06 49.1 6.8 26 62-87 23-48 (205)
396 cd03237 ABC_RNaseL_inhibitor_d 93.8 0.22 4.8E-06 49.7 7.8 27 62-88 22-48 (246)
397 cd03254 ABCC_Glucan_exporter_l 93.7 0.18 3.9E-06 49.7 7.1 27 62-88 26-52 (229)
398 TIGR02857 CydD thiol reductant 93.7 0.072 1.6E-06 59.8 4.7 28 62-89 345-372 (529)
399 PRK07133 DNA polymerase III su 93.7 0.34 7.5E-06 55.2 10.0 49 151-201 105-153 (725)
400 TIGR02012 tigrfam_recA protein 93.7 0.19 4.2E-06 51.7 7.4 45 61-106 51-95 (321)
401 cd03248 ABCC_TAP TAP, the Tran 93.7 0.23 5E-06 48.8 7.8 27 62-88 37-63 (226)
402 PRK15177 Vi polysaccharide exp 93.7 0.1 2.2E-06 50.8 5.2 27 62-88 10-36 (213)
403 PRK13657 cyclic beta-1,2-gluca 93.7 0.055 1.2E-06 61.5 3.8 56 148-204 473-528 (588)
404 COG1136 SalX ABC-type antimicr 93.6 0.076 1.6E-06 51.5 4.1 27 62-88 28-54 (226)
405 COG4962 CpaF Flp pilus assembl 93.6 0.16 3.5E-06 51.9 6.5 45 56-102 164-208 (355)
406 cd00984 DnaB_C DnaB helicase C 93.6 0.06 1.3E-06 53.6 3.5 45 58-102 6-50 (242)
407 KOG0058 Peptide exporter, ABC 93.6 0.058 1.3E-06 60.1 3.6 29 61-89 490-518 (716)
408 TIGR00635 ruvB Holliday juncti 93.6 0.27 5.8E-06 50.8 8.5 23 66-88 31-53 (305)
409 PRK08769 DNA polymerase III su 93.6 0.48 1E-05 49.0 10.1 60 144-205 93-152 (319)
410 PRK13543 cytochrome c biogenes 93.6 0.14 3E-06 49.9 6.0 27 62-88 34-60 (214)
411 TIGR02688 conserved hypothetic 93.5 0.13 2.7E-06 54.5 5.7 26 60-85 204-229 (449)
412 PRK11176 lipid transporter ATP 93.5 0.11 2.4E-06 59.1 5.9 28 62-89 366-393 (582)
413 PRK09354 recA recombinase A; P 93.5 0.22 4.7E-06 51.9 7.4 45 62-107 57-101 (349)
414 PF10443 RNA12: RNA12 protein; 93.5 0.15 3.2E-06 53.9 6.2 54 164-217 148-205 (431)
415 COG1119 ModF ABC-type molybden 93.5 0.33 7.2E-06 47.2 8.1 31 62-92 54-84 (257)
416 TIGR03771 anch_rpt_ABC anchore 93.5 0.66 1.4E-05 45.5 10.6 27 62-88 3-29 (223)
417 COG2255 RuvB Holliday junction 93.5 0.25 5.3E-06 49.1 7.2 24 66-89 53-76 (332)
418 TIGR03345 VI_ClpV1 type VI sec 93.5 0.53 1.1E-05 55.6 11.4 20 67-86 598-617 (852)
419 cd00544 CobU Adenosylcobinamid 93.5 0.45 9.7E-06 44.4 8.8 82 68-174 2-83 (169)
420 COG1126 GlnQ ABC-type polar am 93.4 0.08 1.7E-06 50.4 3.7 25 62-86 25-49 (240)
421 PRK13538 cytochrome c biogenes 93.4 0.13 2.8E-06 49.7 5.3 27 62-88 24-50 (204)
422 COG1110 Reverse gyrase [DNA re 93.4 0.2 4.4E-06 57.6 7.4 77 266-345 115-191 (1187)
423 cd03300 ABC_PotA_N PotA is an 93.4 0.089 1.9E-06 52.0 4.3 27 62-88 23-49 (232)
424 cd03255 ABC_MJ0796_Lo1CDE_FtsE 93.4 0.1 2.2E-06 51.0 4.7 27 62-88 27-53 (218)
425 COG0593 DnaA ATPase involved i 93.4 0.55 1.2E-05 49.8 10.2 23 65-87 113-135 (408)
426 cd01121 Sms Sms (bacterial rad 93.3 0.17 3.7E-06 53.6 6.5 41 62-103 79-119 (372)
427 PRK06305 DNA polymerase III su 93.3 0.56 1.2E-05 51.2 10.6 33 57-89 28-63 (451)
428 TIGR03877 thermo_KaiC_1 KaiC d 93.3 0.09 2E-06 52.2 4.2 41 62-103 18-58 (237)
429 COG4626 Phage terminase-like p 93.3 0.76 1.7E-05 50.0 11.3 148 48-205 59-224 (546)
430 PRK10917 ATP-dependent DNA hel 93.3 0.23 5E-06 57.3 8.1 79 275-358 309-388 (681)
431 cd01128 rho_factor Transcripti 93.3 0.096 2.1E-06 52.1 4.3 45 62-106 13-59 (249)
432 cd03244 ABCC_MRP_domain2 Domai 93.3 0.081 1.7E-06 51.8 3.8 27 62-88 27-53 (221)
433 PF03237 Terminase_6: Terminas 93.3 0.95 2.1E-05 47.9 12.4 140 69-216 1-148 (384)
434 PRK11174 cysteine/glutathione 93.3 0.077 1.7E-06 60.4 4.1 28 62-89 373-400 (588)
435 PF02367 UPF0079: Uncharacteri 93.3 0.13 2.8E-06 45.0 4.5 36 55-90 5-40 (123)
436 cd03232 ABC_PDR_domain2 The pl 93.3 0.24 5.2E-06 47.3 6.9 25 62-86 30-54 (192)
437 PRK09544 znuC high-affinity zi 93.2 0.11 2.4E-06 52.0 4.7 26 62-87 27-52 (251)
438 PRK11054 helD DNA helicase IV; 93.2 0.28 6.1E-06 56.2 8.5 72 46-120 192-266 (684)
439 PRK13695 putative NTPase; Prov 93.2 1.6 3.5E-05 40.8 12.4 22 67-88 2-23 (174)
440 PF06745 KaiC: KaiC; InterPro 93.2 0.079 1.7E-06 52.1 3.6 40 63-102 17-56 (226)
441 cd03251 ABCC_MsbA MsbA is an e 93.2 0.14 3E-06 50.6 5.4 27 62-88 25-51 (234)
442 TIGR03608 L_ocin_972_ABC putat 93.2 0.58 1.3E-05 45.1 9.6 27 62-88 21-47 (206)
443 PRK05580 primosome assembly pr 93.2 0.15 3.2E-06 58.7 6.2 74 276-358 190-263 (679)
444 TIGR01189 ccmA heme ABC export 93.2 0.13 2.9E-06 49.3 5.0 27 62-88 23-49 (198)
445 COG2874 FlaH Predicted ATPases 93.1 0.72 1.6E-05 44.0 9.5 132 65-206 28-167 (235)
446 PRK11160 cysteine/glutathione 93.1 0.12 2.6E-06 58.6 5.4 28 62-89 363-390 (574)
447 cd03258 ABC_MetN_methionine_tr 93.1 0.21 4.4E-06 49.4 6.4 27 62-88 28-54 (233)
448 TIGR00595 priA primosomal prot 93.1 0.21 4.6E-06 55.3 7.0 75 275-358 24-98 (505)
449 PRK08699 DNA polymerase III su 93.0 0.88 1.9E-05 47.3 11.1 56 144-201 93-148 (325)
450 PRK05564 DNA polymerase III su 92.9 0.64 1.4E-05 48.2 10.0 49 153-203 82-130 (313)
451 PRK10789 putative multidrug tr 92.9 0.14 3.1E-06 57.9 5.6 27 62-88 338-364 (569)
452 PRK06871 DNA polymerase III su 92.9 0.45 9.8E-06 49.3 8.6 54 150-205 93-146 (325)
453 PRK10436 hypothetical protein; 92.9 0.25 5.4E-06 53.8 7.0 32 58-89 210-242 (462)
454 cd03268 ABC_BcrA_bacitracin_re 92.9 0.15 3.2E-06 49.4 4.9 26 62-87 23-48 (208)
455 cd03219 ABC_Mj1267_LivG_branch 92.8 0.19 4E-06 49.8 5.7 26 62-87 23-48 (236)
456 TIGR01547 phage_term_2 phage t 92.8 0.53 1.2E-05 50.6 9.6 131 66-207 2-141 (396)
457 COG1122 CbiO ABC-type cobalt t 92.8 0.69 1.5E-05 45.6 9.4 54 163-217 155-208 (235)
458 PF13207 AAA_17: AAA domain; P 92.8 0.11 2.3E-06 45.4 3.4 23 67-89 1-23 (121)
459 cd03252 ABCC_Hemolysin The ABC 92.8 0.23 4.9E-06 49.3 6.2 27 62-88 25-51 (237)
460 TIGR01277 thiQ thiamine ABC tr 92.8 0.18 4E-06 49.0 5.4 27 62-88 21-47 (213)
461 TIGR03411 urea_trans_UrtD urea 92.7 0.18 3.9E-06 50.1 5.4 27 62-88 25-51 (242)
462 cd03231 ABC_CcmA_heme_exporter 92.7 0.17 3.6E-06 48.8 4.9 27 62-88 23-49 (201)
463 cd03245 ABCC_bacteriocin_expor 92.6 0.12 2.7E-06 50.5 4.1 27 62-88 27-53 (220)
464 PRK14873 primosome assembly pr 92.6 0.24 5.1E-06 56.5 6.7 76 275-358 187-262 (665)
465 cd03263 ABC_subfamily_A The AB 92.6 0.94 2E-05 44.2 10.3 52 161-215 148-199 (220)
466 PF12846 AAA_10: AAA-like doma 92.6 0.14 2.9E-06 52.7 4.4 38 65-104 1-38 (304)
467 PRK10247 putative ABC transpor 92.6 0.31 6.7E-06 47.9 6.7 26 62-87 30-55 (225)
468 cd03293 ABC_NrtD_SsuB_transpor 92.5 0.13 2.9E-06 50.2 4.2 26 62-87 27-52 (220)
469 TIGR03522 GldA_ABC_ATP gliding 92.5 0.17 3.7E-06 52.2 5.0 66 147-215 134-199 (301)
470 COG0396 sufC Cysteine desulfur 92.5 0.13 2.8E-06 49.4 3.7 51 162-216 160-211 (251)
471 cd03260 ABC_PstB_phosphate_tra 92.5 0.27 5.8E-06 48.4 6.2 53 161-216 156-208 (227)
472 TIGR02640 gas_vesic_GvpN gas v 92.5 0.2 4.3E-06 50.6 5.3 37 51-87 7-43 (262)
473 COG1131 CcmA ABC-type multidru 92.4 0.3 6.5E-06 50.1 6.6 143 62-214 28-203 (293)
474 TIGR02204 MsbA_rel ABC transpo 92.4 0.21 4.5E-06 56.8 6.0 28 62-89 363-390 (576)
475 COG5008 PilU Tfp pilus assembl 92.4 0.17 3.8E-06 49.4 4.4 42 62-103 124-165 (375)
476 TIGR00767 rho transcription te 92.4 0.13 2.8E-06 54.2 3.9 27 62-88 165-191 (415)
477 TIGR03864 PQQ_ABC_ATP ABC tran 92.4 0.15 3.3E-06 50.5 4.4 26 62-87 24-49 (236)
478 PF13671 AAA_33: AAA domain; P 92.4 0.13 2.9E-06 46.3 3.6 23 67-89 1-23 (143)
479 TIGR03878 thermo_KaiC_2 KaiC d 92.4 0.15 3.2E-06 51.4 4.2 40 63-103 34-73 (259)
480 cd01122 GP4d_helicase GP4d_hel 92.3 0.15 3.3E-06 51.6 4.4 43 60-102 25-67 (271)
481 PLN03232 ABC transporter C fam 92.3 0.36 7.7E-06 60.9 8.4 28 62-89 1259-1286(1495)
482 PRK03992 proteasome-activating 92.3 0.74 1.6E-05 49.3 9.7 25 65-89 165-189 (389)
483 PRK13648 cbiO cobalt transport 92.3 0.92 2E-05 45.9 10.0 27 62-88 32-58 (269)
484 PRK14250 phosphate ABC transpo 92.3 0.32 7E-06 48.3 6.6 26 62-87 26-51 (241)
485 TIGR00958 3a01208 Conjugate Tr 92.3 0.18 3.9E-06 58.7 5.3 28 62-89 504-531 (711)
486 PRK11247 ssuB aliphatic sulfon 92.3 0.17 3.8E-06 50.8 4.6 27 62-88 35-61 (257)
487 cd03253 ABCC_ATM1_transporter 92.2 0.5 1.1E-05 46.7 7.9 27 62-88 24-50 (236)
488 COG0467 RAD55 RecA-superfamily 92.2 0.16 3.5E-06 51.2 4.3 40 62-102 20-59 (260)
489 PRK15429 formate hydrogenlyase 92.2 0.62 1.4E-05 54.0 9.6 43 57-100 391-433 (686)
490 PRK10790 putative multidrug tr 92.2 0.24 5.1E-06 56.5 6.1 28 62-89 364-391 (592)
491 cd03298 ABC_ThiQ_thiamine_tran 92.2 0.26 5.6E-06 47.9 5.6 26 62-87 21-46 (211)
492 COG4988 CydD ABC-type transpor 92.2 0.27 5.8E-06 53.7 6.0 28 62-89 344-371 (559)
493 TIGR03740 galliderm_ABC gallid 92.1 0.25 5.4E-06 48.4 5.5 26 62-87 23-48 (223)
494 KOG2543 Origin recognition com 92.1 1.2 2.7E-05 46.1 10.4 43 47-89 6-54 (438)
495 TIGR01192 chvA glucan exporter 92.1 0.55 1.2E-05 53.4 8.9 27 62-88 358-384 (585)
496 KOG1132 Helicase of the DEAD s 92.1 0.35 7.6E-06 54.9 7.0 122 53-174 28-257 (945)
497 TIGR03346 chaperone_ClpB ATP-d 92.1 0.6 1.3E-05 55.4 9.4 40 49-88 173-217 (852)
498 TIGR00763 lon ATP-dependent pr 92.1 0.91 2E-05 53.3 10.9 39 51-89 325-371 (775)
499 TIGR03689 pup_AAA proteasome A 92.0 1.4 3E-05 48.5 11.5 24 65-88 216-239 (512)
500 PRK15112 antimicrobial peptide 92.0 1.3 2.8E-05 44.8 10.7 27 62-88 36-62 (267)
No 1
>KOG0922 consensus DEAH-box RNA helicase [RNA processing and modification]
Probab=100.00 E-value=1.2e-133 Score=1048.93 Aligned_cols=603 Identities=54% Similarity=0.868 Sum_probs=578.2
Q ss_pred CCccchHhHHHHhcCCCcHHHHHHHHHHHhcCCEEEEEcCCCCcHHHHHHHHHHhccccCCCeEEEEeCchHHHHHHHHH
Q 006122 34 SIGYGYASIEKQRQRLPVYKYRTAILYLVETHATTIIVGETGSGKTTQIPQYLKEAGWADGGRVIACTQPRRLAVQAVAS 113 (660)
Q Consensus 34 ~~~~~~~~~~~~~~~lPi~~~~~~i~~~l~~~~~vii~apTGsGKT~~ip~~l~~~~~~~~~~~i~v~p~r~la~~~~~~ 113 (660)
+......++.++|..|||++++++|+.++++++++||.|+||||||||+||+++++++...++ |.||||||+|+.++|+
T Consensus 35 ~~~~~~~~i~~qR~~LPI~~~r~~il~~ve~nqvlIviGeTGsGKSTQipQyL~eaG~~~~g~-I~~TQPRRVAavslA~ 113 (674)
T KOG0922|consen 35 YGKSTNLSIQEQRESLPIYKYRDQILYAVEDNQVLIVIGETGSGKSTQIPQYLAEAGFASSGK-IACTQPRRVAAVSLAK 113 (674)
T ss_pred cccccccCHHHhhccCCHHHHHHHHHHHHHHCCEEEEEcCCCCCccccHhHHHHhcccccCCc-EEeecCchHHHHHHHH
Confidence 334444578899999999999999999999999999999999999999999999999988876 9999999999999999
Q ss_pred HHHHHhCCeeeeEEeeeeeccccCCCCCceEEEechHHHHHHHhcCCCCCCCcEEEEeCCCcCCcChhHHHHHHHHHHHh
Q 006122 114 RVAEEMGVKVGEEVGYTIRFEDFTNKDLTAIKFLTDGVLLREMMDDPLLTKYSVIMVDEAHERSISTDILLGLLKKIQRC 193 (660)
Q Consensus 114 ~~~~~~~~~~~~~vg~~~~~~~~~~~~~~~I~v~T~~~ll~~l~~~~~l~~~~~iIiDE~Her~~~~d~ll~~l~~~~~~ 193 (660)
|++.|+++.+|..|||.+||++..+. .|+|.|+|+|+|+|++..||+|.+|++|||||||||++++|++++++|++.+.
T Consensus 114 RVAeE~~~~lG~~VGY~IRFed~ts~-~TrikymTDG~LLRE~l~Dp~LskYsvIIlDEAHERsl~TDiLlGlLKki~~~ 192 (674)
T KOG0922|consen 114 RVAEEMGCQLGEEVGYTIRFEDSTSK-DTRIKYMTDGMLLREILKDPLLSKYSVIILDEAHERSLHTDILLGLLKKILKK 192 (674)
T ss_pred HHHHHhCCCcCceeeeEEEecccCCC-ceeEEEecchHHHHHHhcCCccccccEEEEechhhhhhHHHHHHHHHHHHHhc
Confidence 99999999999999999999999999 99999999999999999999999999999999999999999999999999999
Q ss_pred cCCceEEEeecccchHHHHHHhhcCCCCCCCcccccCCCCCCeEEEECCccccceEEecCCCchhHHHHHHHHHHHHHhc
Q 006122 194 RSDLRLIISSATIEAKSMSAFFHARKGRRGLEGVELVPRLEPAILSVEGRGFNVQIHYVEEPVSDYVQAAVSTVLLIHDK 273 (660)
Q Consensus 194 ~~~~kii~~SAT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~ 273 (660)
++++|+|+||||+|++.|++||++++ ++.++||.|||+++|...+..||++.++..+++||.+
T Consensus 193 R~~LklIimSATlda~kfS~yF~~a~-----------------i~~i~GR~fPVei~y~~~p~~dYv~a~~~tv~~Ih~~ 255 (674)
T KOG0922|consen 193 RPDLKLIIMSATLDAEKFSEYFNNAP-----------------ILTIPGRTFPVEILYLKEPTADYVDAALITVIQIHLT 255 (674)
T ss_pred CCCceEEEEeeeecHHHHHHHhcCCc-----------------eEeecCCCCceeEEeccCCchhhHHHHHHHHHHHHcc
Confidence 99999999999999999999999988 9999999999999999999999999999999999999
Q ss_pred CCCCcEEEEcCCHHHHHHHHHHHHHHhhhccCCCCCeEEEEccCCCCHHHHhhhcCCCCCCCcEEEEeCCCcccccCCCC
Q 006122 274 EPPGDILVFLTGQDDIDATIQLLTEEARTSKKNSSGLIILPLYSGLSRAEQEQVFSPTPRGKRKVVISTNIAETSLTLEG 353 (660)
Q Consensus 274 ~~~~~iLVF~~~~~~i~~l~~~L~~~~~~~~~~~~~~~v~~lh~~l~~~~r~~v~~~f~~g~~~vlvaT~i~e~Gidip~ 353 (660)
+++|+||||++|+++|+.+++.|.+.......+.+. .+.++||+|+.++|.+||+..+.|.||||+||||||+++|||+
T Consensus 256 E~~GDILvFLtGqeEIe~~~~~l~e~~~~~~~~~~~-~~lply~aL~~e~Q~rvF~p~p~g~RKvIlsTNIAETSlTI~G 334 (674)
T KOG0922|consen 256 EPPGDILVFLTGQEEIEAACELLRERAKSLPEDCPE-LILPLYGALPSEEQSRVFDPAPPGKRKVILSTNIAETSLTIDG 334 (674)
T ss_pred CCCCCEEEEeCCHHHHHHHHHHHHHHhhhccccCcc-eeeeecccCCHHHhhccccCCCCCcceEEEEcceeeeeEEecc
Confidence 999999999999999999999999998777766666 8899999999999999999999999999999999999999999
Q ss_pred eEEEEeCCCccceeecCCCCcccceeeecCHHhHHHhhcccCCCCCcEEEEccChHHhhhhCCCCCCCccccccchhHHH
Q 006122 354 IVYVVDSGFSKQRFYNPISDIENLVVAPISKASARQRAGRAGRVRPGKCYRLYTEEYFVKEIPAEGIPEMQRSNLVSCVI 433 (660)
Q Consensus 354 v~~VId~g~~k~~~~~~~~~~~~l~~~~~s~~~~~QR~GRaGR~~~G~~~~l~~~~~~~~~~~~~~~pei~~~~l~~~~l 433 (660)
|.||||+|++|++.|||..|++.|...|+|++++.||+|||||++||+|||||++++|+. |++.++|||+|++|...+|
T Consensus 335 I~YVVDsG~vK~~~y~p~~g~~~L~v~~ISkasA~QRaGRAGRt~pGkcyRLYte~~~~~-~~~~~~PEI~R~~Ls~~vL 413 (674)
T KOG0922|consen 335 IRYVVDSGFVKQKKYNPRTGLDSLIVVPISKASANQRAGRAGRTGPGKCYRLYTESAYDK-MPLQTVPEIQRVNLSSAVL 413 (674)
T ss_pred eEEEEcCCceEEEeeccccCccceeEEechHHHHhhhcccCCCCCCceEEEeeeHHHHhh-cccCCCCceeeechHHHHH
Confidence 999999999999999999999999999999999999999999999999999999999977 9999999999999999999
Q ss_pred HHHHcCCCCccCCCCCCCCCHHHHHHHHHHHHHCCCCCCCCCcchHHHHHhccCCCChhhhHHHHhhcccCchhHHHHHH
Q 006122 434 QLKALGIDNILGFDWPASPPPEAMIRALEVLYSLGVLDDDAKLTSPTGFQVAEIPLEPMISKMILSSNELGCSEEIITIS 513 (660)
Q Consensus 434 ~l~~~~~~~~~~~~~~~~p~~~~~~~al~~L~~lgald~~~~lT~~lG~~~~~lpl~p~~~~~l~~~~~~~c~~~~~~i~ 513 (660)
++|++|++|+..|+|+|||+.+++..|++.|+.+||||++|.+|.|+|+.|+++|++|.++|+|+.+..+||.+++++|+
T Consensus 414 ~Lkalgi~d~l~F~f~d~P~~~~l~~AL~~L~~lgald~~g~lt~p~G~~ma~~Pl~p~lsk~ll~s~~~gc~~e~l~i~ 493 (674)
T KOG0922|consen 414 QLKALGINDPLRFPFIDPPPPEALEEALEELYSLGALDDRGKLTSPLGRQMAELPLEPHLSKMLLKSSELGCSEEILTIA 493 (674)
T ss_pred HHHhcCCCCcccCCCCCCCChHHHHHHHHHHHhcCcccCcCCcCchHHhhhhhcCCCcchhhhhhhccccCCcchhhhhe
Confidence 99999999999999999999999999999999999999999999779999999999999999999999999999999999
Q ss_pred hhcccCcccccCcchHHH-HHHHHHhhcCCCCcHHHHHHHHHHHHhcCcchhHHhhccCCHHHHHHHHHHHHHHHHHHHH
Q 006122 514 AVLSIQSIWVSGRGAQKE-LDEAKLRFAAAEGDHVTFLNIYKGFLQSCKSSHWCHKNFINYHAMKKVIEIREQLRRIAQR 592 (660)
Q Consensus 514 a~ls~~~~f~~~~~~~~~-~~~~~~~~~~~~~D~~~~l~~~~~~~~~~~~~~wc~~~~l~~~~l~~~~~ir~ql~~~l~~ 592 (660)
||||++++|.+|.+.+.+ ++..|.+|...+|||+|+||+|+.|.+++.+.+||.+||||++.|++|.++|+||.+++.+
T Consensus 494 a~Lsv~~~f~~p~~~~~~~a~~~~~kf~~~eGDh~tlL~vy~~~~~~~~~~~wC~en~i~~r~l~~a~~ir~QL~~i~~~ 573 (674)
T KOG0922|consen 494 AMLSVQSVFSRPKDKKAEDADRKRAKFANPEGDHLTLLNVYESWKENGTSKKWCKENFINARSLKRAKDIRKQLRRILDK 573 (674)
T ss_pred eeeeccceecCccchhhhhhhHHHHhhcCcccCHHHHHHHHHHHHhcCChhhHHHHhcccHHHHHHHHHHHHHHHHHHHH
Confidence 999999999999988777 8899999999999999999999999999999999999999999999999999999999999
Q ss_pred cCCcccCCCCChHHHHHHHHHhhhhhhhccCCCCCcccccccCCCCcEEEccCCC-------CcEE----EecCccccC
Q 006122 593 IGIVMKSCESDMQVSLLTLLLVCLERISTLYDFPKLMGTCMPSAGCSFVYHVTCS-------PVLC----VCTGRFTDQ 660 (660)
Q Consensus 593 ~~l~~~~~~~~~~~i~~al~~g~~~~ia~~~~~~~~~~~~~~~~~~~~~~hp~~~-------~~~~----~~~~~~~~~ 660 (660)
++++..+|+.|.+.|+|||++||+.|+|++...+.|... ..|+.|++||||. |++| ++|..|+++
T Consensus 574 ~~~~~~s~~~d~~~i~k~l~aGff~N~A~~~~~~~Yrti---~~~~~v~IHPSS~l~~~~p~~viy~el~~Ttk~Y~r~ 649 (674)
T KOG0922|consen 574 FGLPVSSCGGDMEKIRKCLCAGFFRNVAERDYQDGYRTI---RGGQPVYIHPSSVLFRRKPEWVIYHELLQTTKEYMRN 649 (674)
T ss_pred cCCCccCCCCCHHHHHHHHHHHHHHHHHHhhcCCCeEEc---cCCcEEEEechHHhhcCCCCEEEEEEEeecchHhHhh
Confidence 999999999999999999999999999998734446555 6699999999887 8888 778788763
No 2
>KOG0923 consensus mRNA splicing factor ATP-dependent RNA helicase [RNA processing and modification]
Probab=100.00 E-value=3.7e-132 Score=1023.04 Aligned_cols=600 Identities=48% Similarity=0.788 Sum_probs=582.8
Q ss_pred hHhHHHHhcCCCcHHHHHHHHHHHhcCCEEEEEcCCCCcHHHHHHHHHHhccccCCCeEEEEeCchHHHHHHHHHHHHHH
Q 006122 39 YASIEKQRQRLPVYKYRTAILYLVETHATTIIVGETGSGKTTQIPQYLKEAGWADGGRVIACTQPRRLAVQAVASRVAEE 118 (660)
Q Consensus 39 ~~~~~~~~~~lPi~~~~~~i~~~l~~~~~vii~apTGsGKT~~ip~~l~~~~~~~~~~~i~v~p~r~la~~~~~~~~~~~ 118 (660)
..++.+.|+.||+|.++++++.++.+++++||.|.||||||||+||+++++++..+++.|.||||||+||.++|.|++++
T Consensus 254 ~~~iee~RksLPVy~ykdell~av~e~QVLiI~GeTGSGKTTQiPQyL~EaGytk~gk~IgcTQPRRVAAmSVAaRVA~E 333 (902)
T KOG0923|consen 254 RESIEEVRKSLPVYPYKDELLKAVKEHQVLIIVGETGSGKTTQIPQYLYEAGYTKGGKKIGCTQPRRVAAMSVAARVAEE 333 (902)
T ss_pred HHHHHHHHhcCCchhhHHHHHHHHHhCcEEEEEcCCCCCccccccHHHHhcccccCCceEeecCcchHHHHHHHHHHHHH
Confidence 35677889999999999999999999999999999999999999999999999999988999999999999999999999
Q ss_pred hCCeeeeEEeeeeeccccCCCCCceEEEechHHHHHHHhcCCCCCCCcEEEEeCCCcCCcChhHHHHHHHHHHHhcCCce
Q 006122 119 MGVKVGEEVGYTIRFEDFTNKDLTAIKFLTDGVLLREMMDDPLLTKYSVIMVDEAHERSISTDILLGLLKKIQRCRSDLR 198 (660)
Q Consensus 119 ~~~~~~~~vg~~~~~~~~~~~~~~~I~v~T~~~ll~~l~~~~~l~~~~~iIiDE~Her~~~~d~ll~~l~~~~~~~~~~k 198 (660)
+|+.+|..+||+++|+++.+. ++.|.|+|+|+|++.++.+|.|..|++|||||||||++++|.+.++++.+.+.+|++|
T Consensus 334 MgvkLG~eVGYsIRFEdcTSe-kTvlKYMTDGmLlREfL~epdLasYSViiiDEAHERTL~TDILfgLvKDIar~RpdLK 412 (902)
T KOG0923|consen 334 MGVKLGHEVGYSIRFEDCTSE-KTVLKYMTDGMLLREFLSEPDLASYSVIIVDEAHERTLHTDILFGLVKDIARFRPDLK 412 (902)
T ss_pred hCcccccccceEEEeccccCc-ceeeeeecchhHHHHHhccccccceeEEEeehhhhhhhhhhHHHHHHHHHHhhCCcce
Confidence 999999999999999999998 9999999999999999999999999999999999999999999999999999999999
Q ss_pred EEEeecccchHHHHHHhhcCCCCCCCcccccCCCCCCeEEEECCccccceEEecCCCchhHHHHHHHHHHHHHhcCCCCc
Q 006122 199 LIISSATIEAKSMSAFFHARKGRRGLEGVELVPRLEPAILSVEGRGFNVQIHYVEEPVSDYVQAAVSTVLLIHDKEPPGD 278 (660)
Q Consensus 199 ii~~SAT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 278 (660)
++++|||+|+++|+.||+++| ++.++|+.|||+++|...+..||++.++..+++||.+++.|+
T Consensus 413 llIsSAT~DAekFS~fFDdap-----------------IF~iPGRRyPVdi~Yt~~PEAdYldAai~tVlqIH~tqp~GD 475 (902)
T KOG0923|consen 413 LLISSATMDAEKFSAFFDDAP-----------------IFRIPGRRYPVDIFYTKAPEADYLDAAIVTVLQIHLTQPLGD 475 (902)
T ss_pred EEeeccccCHHHHHHhccCCc-----------------EEeccCcccceeeecccCCchhHHHHHHhhheeeEeccCCcc
Confidence 999999999999999999998 999999999999999999999999999999999999999999
Q ss_pred EEEEcCCHHHHHHHHHHHHHHhhhccCCCCCeEEEEccCCCCHHHHhhhcCCCCCCCcEEEEeCCCcccccCCCCeEEEE
Q 006122 279 ILVFLTGQDDIDATIQLLTEEARTSKKNSSGLIILPLYSGLSRAEQEQVFSPTPRGKRKVVISTNIAETSLTLEGIVYVV 358 (660)
Q Consensus 279 iLVF~~~~~~i~~l~~~L~~~~~~~~~~~~~~~v~~lh~~l~~~~r~~v~~~f~~g~~~vlvaT~i~e~Gidip~v~~VI 358 (660)
||||+++.++++.+.+.|.+....++.....+.++|+|++||.+.|.+||++.++|.+|||+||||||+++||++|.|||
T Consensus 476 ILVFltGQeEIEt~~e~l~~~~~~LGski~eliv~PiYaNLPselQakIFePtP~gaRKVVLATNIAETSlTIdgI~yVi 555 (902)
T KOG0923|consen 476 ILVFLTGQEEIETVKENLKERCRRLGSKIRELIVLPIYANLPSELQAKIFEPTPPGARKVVLATNIAETSLTIDGIKYVI 555 (902)
T ss_pred EEEEeccHHHHHHHHHHHHHHHHHhccccceEEEeeccccCChHHHHhhcCCCCCCceeEEEeecchhhceeecCeEEEe
Confidence 99999999999999999999999998888899999999999999999999999999999999999999999999999999
Q ss_pred eCCCccceeecCCCCcccceeeecCHHhHHHhhcccCCCCCcEEEEccChHHhhhhCCCCCCCccccccchhHHHHHHHc
Q 006122 359 DSGFSKQRFYNPISDIENLVVAPISKASARQRAGRAGRVRPGKCYRLYTEEYFVKEIPAEGIPEMQRSNLVSCVIQLKAL 438 (660)
Q Consensus 359 d~g~~k~~~~~~~~~~~~l~~~~~s~~~~~QR~GRaGR~~~G~~~~l~~~~~~~~~~~~~~~pei~~~~l~~~~l~l~~~ 438 (660)
|.|++|++.|+|++|+..|.+.|+|++++.||+|||||++||+|||||+...|.+.++..+.|||+|.+|.+++|.|+++
T Consensus 556 DpGf~K~nsynprtGmesL~v~piSKAsA~QRaGRAGRtgPGKCfRLYt~~aY~~eLE~~t~PEIqRtnL~nvVL~LkSL 635 (902)
T KOG0923|consen 556 DPGFVKQNSYNPRTGMESLLVTPISKASANQRAGRAGRTGPGKCFRLYTAWAYEHELEEMTVPEIQRTNLGNVVLLLKSL 635 (902)
T ss_pred cCccccccCcCCCcCceeEEEeeechhhhhhhccccCCCCCCceEEeechhhhhhhhccCCCcceeeccchhHHHHHHhc
Confidence 99999999999999999999999999999999999999999999999999999998999999999999999999999999
Q ss_pred CCCCccCCCCCCCCCHHHHHHHHHHHHHCCCCCCCCCcchHHHHHhccCCCChhhhHHHHhhcccCchhHHHHHHhhccc
Q 006122 439 GIDNILGFDWPASPPPEAMIRALEVLYSLGVLDDDAKLTSPTGFQVAEIPLEPMISKMILSSNELGCSEEIITISAVLSI 518 (660)
Q Consensus 439 ~~~~~~~~~~~~~p~~~~~~~al~~L~~lgald~~~~lT~~lG~~~~~lpl~p~~~~~l~~~~~~~c~~~~~~i~a~ls~ 518 (660)
||+|+.+|+|+|||+.+++..|++.|+.+||++..|+|| .+|+.|++||+||+++|||+.+..++|.+|+++|+||||+
T Consensus 636 GI~Dl~~FdFmDpPp~etL~~aLE~LyaLGALn~~GeLT-k~GrrMaEfP~dPmlsKmi~as~ky~cs~EiitiaamlS~ 714 (902)
T KOG0923|consen 636 GIHDLIHFDFLDPPPTETLLKALEQLYALGALNHLGELT-KLGRRMAEFPVDPMLSKMIVASEKYKCSEEIITIAAMLSV 714 (902)
T ss_pred CcchhcccccCCCCChHHHHHHHHHHHHhhccccccchh-hhhhhhhhcCCCHHHHhHHhhhccccchHHHHHHHHHHhc
Confidence 999999999999999999999999999999999999999 5999999999999999999999999999999999999999
Q ss_pred C-cccccCcchHHHHHHHHHhhcCCCCcHHHHHHHHHHHHhcCcchhHHhhccCCHHHHHHHHHHHHHHHHHHHHcCCcc
Q 006122 519 Q-SIWVSGRGAQKELDEAKLRFAAAEGDHVTFLNIYKGFLQSCKSSHWCHKNFINYHAMKKVIEIREQLRRIAQRIGIVM 597 (660)
Q Consensus 519 ~-~~f~~~~~~~~~~~~~~~~~~~~~~D~~~~l~~~~~~~~~~~~~~wc~~~~l~~~~l~~~~~ir~ql~~~l~~~~l~~ 597 (660)
. ++|.+|.+..-.++++++.|....|||+++|++|++|.+++.+.+||.+|++.+++|++|+++|.||..+|++.++..
T Consensus 715 ~~svfyrpk~~~v~ad~a~~~f~~~~gDhi~~L~vyn~w~es~~s~~wC~e~~iq~~sm~rardir~qL~gll~~v~~~~ 794 (902)
T KOG0923|consen 715 GASVFYRPKDKQVHADNARKNFEEPVGDHIVLLNVYNQWKESKYSTQWCYENFIQYRSMKRARDIRDQLEGLLERVEIDL 794 (902)
T ss_pred CchheecchhhhhhhhhhhhccCCCCcchhhhhHHHHHHhhcchhhHHHHHhhhhHHHHHHHHHHHHHHHHHhhhccccc
Confidence 8 799999999889999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cCCCCChHHHHHHHHHhhhhhhhccCCCCCcccccccCCCCcEEEccCCC-------CcEE----EecCccccC
Q 006122 598 KSCESDMQVSLLTLLLVCLERISTLYDFPKLMGTCMPSAGCSFVYHVTCS-------PVLC----VCTGRFTDQ 660 (660)
Q Consensus 598 ~~~~~~~~~i~~al~~g~~~~ia~~~~~~~~~~~~~~~~~~~~~~hp~~~-------~~~~----~~~~~~~~~ 660 (660)
.++..+...||+|+.+||++|+|++...+.|..... .+.|+.||+|+ |++| +++|.||+|
T Consensus 795 ~s~~~~~~~irk~i~aGff~h~a~l~~~g~y~tvk~---~~tv~~hp~S~l~~~~P~wvvy~eLv~tske~mr~ 865 (902)
T KOG0923|consen 795 SSNQNDLDKIRKAITAGFFYHTAKLSKGGHYRTVKH---PQTVSIHPNSGLFEQLPRWVVYHELVLTSKEFMRQ 865 (902)
T ss_pred cCChHHHHHHHHHHhccccccceeccCCCcceeecc---CcceeecCcccccccCCceEEEeehhcChHHHHHH
Confidence 998888999999999999999999998887877744 44799999998 7778 899999986
No 3
>KOG0924 consensus mRNA splicing factor ATP-dependent RNA helicase [RNA processing and modification]
Probab=100.00 E-value=1.2e-128 Score=997.85 Aligned_cols=584 Identities=44% Similarity=0.771 Sum_probs=567.7
Q ss_pred HhHHHHhcCCCcHHHHHHHHHHHhcCCEEEEEcCCCCcHHHHHHHHHHhccccCCCeEEEEeCchHHHHHHHHHHHHHHh
Q 006122 40 ASIEKQRQRLPVYKYRTAILYLVETHATTIIVGETGSGKTTQIPQYLKEAGWADGGRVIACTQPRRLAVQAVASRVAEEM 119 (660)
Q Consensus 40 ~~~~~~~~~lPi~~~~~~i~~~l~~~~~vii~apTGsGKT~~ip~~l~~~~~~~~~~~i~v~p~r~la~~~~~~~~~~~~ 119 (660)
+.+.++++.||++..|+++++.|+.|+++||+|+||||||||+||++++.++..++ .|.|+|||++||.++|+|++.++
T Consensus 346 k~i~eqrq~LPvf~~R~~ll~~ir~n~vvvivgETGSGKTTQl~QyL~edGY~~~G-mIGcTQPRRvAAiSVAkrVa~EM 424 (1042)
T KOG0924|consen 346 KSIREQRQYLPVFACRDQLLSVIRENQVVVIVGETGSGKTTQLAQYLYEDGYADNG-MIGCTQPRRVAAISVAKRVAEEM 424 (1042)
T ss_pred chHHHHHhhcchHHHHHHHHHHHhhCcEEEEEecCCCCchhhhHHHHHhcccccCC-eeeecCchHHHHHHHHHHHHHHh
Confidence 35889999999999999999999999999999999999999999999999998776 89999999999999999999999
Q ss_pred CCeeeeEEeeeeeccccCCCCCceEEEechHHHHHHHhcCCCCCCCcEEEEeCCCcCCcChhHHHHHHHHHHHhcCCceE
Q 006122 120 GVKVGEEVGYTIRFEDFTNKDLTAIKFLTDGVLLREMMDDPLLTKYSVIMVDEAHERSISTDILLGLLKKIQRCRSDLRL 199 (660)
Q Consensus 120 ~~~~~~~vg~~~~~~~~~~~~~~~I~v~T~~~ll~~l~~~~~l~~~~~iIiDE~Her~~~~d~ll~~l~~~~~~~~~~ki 199 (660)
+..+|..|||.+||++..++ .+.|.|+|+|+|++..+.+..|.+|++||+||||||++++|++.++++.++..+.++|+
T Consensus 425 ~~~lG~~VGYsIRFEdvT~~-~T~IkymTDGiLLrEsL~d~~L~kYSviImDEAHERslNtDilfGllk~~larRrdlKl 503 (1042)
T KOG0924|consen 425 GVTLGDTVGYSIRFEDVTSE-DTKIKYMTDGILLRESLKDRDLDKYSVIIMDEAHERSLNTDILFGLLKKVLARRRDLKL 503 (1042)
T ss_pred CCccccccceEEEeeecCCC-ceeEEEeccchHHHHHhhhhhhhheeEEEechhhhcccchHHHHHHHHHHHHhhccceE
Confidence 99999999999999999998 99999999999999999999999999999999999999999999999999999999999
Q ss_pred EEeecccchHHHHHHhhcCCCCCCCcccccCCCCCCeEEEECCccccceEEecCCCchhHHHHHHHHHHHHHhcCCCCcE
Q 006122 200 IISSATIEAKSMSAFFHARKGRRGLEGVELVPRLEPAILSVEGRGFNVQIHYVEEPVSDYVQAAVSTVLLIHDKEPPGDI 279 (660)
Q Consensus 200 i~~SAT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i 279 (660)
|++|||+|+++|++||+++| .+.++|++|||++.|...+.+||++.++...+.||.....|+|
T Consensus 504 iVtSATm~a~kf~nfFgn~p-----------------~f~IpGRTyPV~~~~~k~p~eDYVeaavkq~v~Ihl~~~~Gdi 566 (1042)
T KOG0924|consen 504 IVTSATMDAQKFSNFFGNCP-----------------QFTIPGRTYPVEIMYTKTPVEDYVEAAVKQAVQIHLSGPPGDI 566 (1042)
T ss_pred EEeeccccHHHHHHHhCCCc-----------------eeeecCCccceEEEeccCchHHHHHHHHhhheEeeccCCCCCE
Confidence 99999999999999999998 9999999999999999999999999999999999999999999
Q ss_pred EEEcCCHHHHHHHHHHHHHHhhhccCC-CCCeEEEEccCCCCHHHHhhhcCCCCCCCcEEEEeCCCcccccCCCCeEEEE
Q 006122 280 LVFLTGQDDIDATIQLLTEEARTSKKN-SSGLIILPLYSGLSRAEQEQVFSPTPRGKRKVVISTNIAETSLTLEGIVYVV 358 (660)
Q Consensus 280 LVF~~~~~~i~~l~~~L~~~~~~~~~~-~~~~~v~~lh~~l~~~~r~~v~~~f~~g~~~vlvaT~i~e~Gidip~v~~VI 358 (660)
|||.+++++++..+..+.+.+.++... ..++.|+++|+.|+.+-|.++|+..+.|.+||||||||||+++|||+|.|||
T Consensus 567 lIfmtGqediE~t~~~i~~~l~ql~~~~~~~L~vlpiYSQLp~dlQ~kiFq~a~~~vRK~IvATNIAETSLTi~gI~yVI 646 (1042)
T KOG0924|consen 567 LIFMTGQEDIECTCDIIKEKLEQLDSAPTTDLAVLPIYSQLPADLQAKIFQKAEGGVRKCIVATNIAETSLTIPGIRYVI 646 (1042)
T ss_pred EEecCCCcchhHHHHHHHHHHHhhhcCCCCceEEEeehhhCchhhhhhhcccCCCCceeEEEeccchhhceeecceEEEE
Confidence 999999999999999999887765432 2489999999999999999999999999999999999999999999999999
Q ss_pred eCCCccceeecCCCCcccceeeecCHHhHHHhhcccCCCCCcEEEEccChHHhhhhCCCCCCCccccccchhHHHHHHHc
Q 006122 359 DSGFSKQRFYNPISDIENLVVAPISKASARQRAGRAGRVRPGKCYRLYTEEYFVKEIPAEGIPEMQRSNLVSCVIQLKAL 438 (660)
Q Consensus 359 d~g~~k~~~~~~~~~~~~l~~~~~s~~~~~QR~GRaGR~~~G~~~~l~~~~~~~~~~~~~~~pei~~~~l~~~~l~l~~~ 438 (660)
|+|++|.++|++..|++.|.+.|||++++.||+|||||++||.||++|+++.|.+.|.+.++|||+|.+|.+++|.|+++
T Consensus 647 D~Gy~K~kvyn~~~G~D~L~~~pIS~AnA~QRaGRAGRt~pG~cYRlYTe~ay~~eml~stvPEIqRTNl~nvVLlLksl 726 (1042)
T KOG0924|consen 647 DTGYCKLKVYNPRIGMDALQIVPISQANADQRAGRAGRTGPGTCYRLYTEDAYKNEMLPSTVPEIQRTNLSNVVLLLKSL 726 (1042)
T ss_pred ecCceeeeecccccccceeEEEechhccchhhccccCCCCCcceeeehhhhHHHhhcccCCCchhhhcchhhHHHHHHhc
Confidence 99999999999999999999999999999999999999999999999999999988999999999999999999999999
Q ss_pred CCCCccCCCCCCCCCHHHHHHHHHHHHHCCCCCCCCCcchHHHHHhccCCCChhhhHHHHhhcccCchhHHHHHHhhccc
Q 006122 439 GIDNILGFDWPASPPPEAMIRALEVLYSLGVLDDDAKLTSPTGFQVAEIPLEPMISKMILSSNELGCSEEIITISAVLSI 518 (660)
Q Consensus 439 ~~~~~~~~~~~~~p~~~~~~~al~~L~~lgald~~~~lT~~lG~~~~~lpl~p~~~~~l~~~~~~~c~~~~~~i~a~ls~ 518 (660)
|++++..|+|+|||+.+.+..++..|..+||||..|.|| |+|+.|++||+||.++|||+.|..+||.+|+++|++|||+
T Consensus 727 gV~dll~FdFmD~Pped~~~~sly~Lw~LGAl~~~g~LT-~lG~~MvefpLDP~lsKmll~a~~~Gc~dEilsIvSmLSv 805 (1042)
T KOG0924|consen 727 GVDDLLKFDFMDPPPEDNLLNSLYQLWTLGALDNTGQLT-PLGRKMVEFPLDPPLSKMLLMAARMGCSDEILSIVSMLSV 805 (1042)
T ss_pred ChhhhhCCCcCCCCHHHHHHHHHHHHHHhhccccCCccc-hhhHHhhhCCCCchHHHHHHHHhccCcHHHHHHHHHHhcc
Confidence 999999999999999999999999999999999999999 8999999999999999999999999999999999999999
Q ss_pred CcccccCcchHHHHHHHHHhhcCCCCcHHHHHHHHHHHHhcCcchhHHhhccCCHHHHHHHHHHHHHHHHHHHHcCCccc
Q 006122 519 QSIWVSGRGAQKELDEAKLRFAAAEGDHVTFLNIYKGFLQSCKSSHWCHKNFINYHAMKKVIEIREQLRRIAQRIGIVMK 598 (660)
Q Consensus 519 ~~~f~~~~~~~~~~~~~~~~~~~~~~D~~~~l~~~~~~~~~~~~~~wc~~~~l~~~~l~~~~~ir~ql~~~l~~~~l~~~ 598 (660)
+.+|.+|.+..++++.+|.+|..++|||||+||+|++|.++.++..||.+|+|+.++|+.|+++|+||+.+|+..+++..
T Consensus 806 p~VF~rpker~eead~ar~Kf~~~~sDhLTlLNVf~qw~~~~~~~~WCnd~~l~~kaL~~arevR~ql~~il~~l~~~l~ 885 (1042)
T KOG0924|consen 806 PAVFYRPKEREEEADAAREKFQVPESDHLTLLNVFNQWRKNKYSSMWCNDHYLQVKALKKAREVRRQLLEILKQLKLPLI 885 (1042)
T ss_pred cceeeccccchhhhhhHHhhhcCCCCchhhHHHHHHHHHhcCCchhhhhhhhhhHHHHHHHHHHHHHHHHHHHHcCCCcc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCChHHHHHHHHHhhhhhhhccCCCCCcccccccCCCCcEEEccCCC
Q 006122 599 SCESDMQVSLLTLLLVCLERISTLYDFPKLMGTCMPSAGCSFVYHVTCS 647 (660)
Q Consensus 599 ~~~~~~~~i~~al~~g~~~~ia~~~~~~~~~~~~~~~~~~~~~~hp~~~ 647 (660)
|| .||+.||||||+||+.|+|++.+...|+.. +.|-+.++||+|+
T Consensus 886 S~-~dwdivrKCIcs~~fhn~Arlkg~g~YV~~---~tg~~c~lHPsS~ 930 (1042)
T KOG0924|consen 886 SS-DDWDIVRKCICSAYFHNAARLKGIGEYVNL---STGIPCHLHPSSV 930 (1042)
T ss_pred cC-chHHHHHHHHHHHHHHHHHHhccCceEEEc---cCCcceeecchHh
Confidence 99 999999999999999999999988888777 7799999999998
No 4
>KOG0925 consensus mRNA splicing factor ATP-dependent RNA helicase [RNA processing and modification]
Probab=100.00 E-value=7.5e-127 Score=953.19 Aligned_cols=605 Identities=47% Similarity=0.747 Sum_probs=577.2
Q ss_pred cccCCCCCCCccchHhHHHHhcCCCcHHHHHHHHHHHhcCCEEEEEcCCCCcHHHHHHHHHHhccccCCCeEEEEeCchH
Q 006122 26 SSSLSSASSIGYGYASIEKQRQRLPVYKYRTAILYLVETHATTIIVGETGSGKTTQIPQYLKEAGWADGGRVIACTQPRR 105 (660)
Q Consensus 26 ~~~~~~~~~~~~~~~~~~~~~~~lPi~~~~~~i~~~l~~~~~vii~apTGsGKT~~ip~~l~~~~~~~~~~~i~v~p~r~ 105 (660)
-++|++.||++.+| .+.+.|..||+|.+++++++.+..|+.++++|+||||||||||||..+...... .-|.|+|||+
T Consensus 24 ~Npf~~~p~s~rY~-~ilk~R~~LPvw~~k~~F~~~l~~nQ~~v~vGetgsGKttQiPq~~~~~~~~~~-~~v~CTQprr 101 (699)
T KOG0925|consen 24 INPFNGKPYSQRYY-DILKKRRELPVWEQKEEFLKLLLNNQIIVLVGETGSGKTTQIPQFVLEYELSHL-TGVACTQPRR 101 (699)
T ss_pred cCCCCCCcCcHHHH-HHHHHHhcCchHHhHHHHHHHHhcCceEEEEecCCCCccccCcHHHHHHHHhhc-cceeecCchH
Confidence 46799999999766 788999999999999999999999999999999999999999999998866554 4588999999
Q ss_pred HHHHHHHHHHHHHhCCeeeeEEeeeeeccccCCCCCceEEEechHHHHHHHhcCCCCCCCcEEEEeCCCcCCcChhHHHH
Q 006122 106 LAVQAVASRVAEEMGVKVGEEVGYTIRFEDFTNKDLTAIKFLTDGVLLREMMDDPLLTKYSVIMVDEAHERSISTDILLG 185 (660)
Q Consensus 106 la~~~~~~~~~~~~~~~~~~~vg~~~~~~~~~~~~~~~I~v~T~~~ll~~l~~~~~l~~~~~iIiDE~Her~~~~d~ll~ 185 (660)
+++.++|+|++++++..+|..|||.++|+++.++ ++-+.|||+|+|+++.++++.+..|++||+||||||++.+|.+++
T Consensus 102 vaamsva~RVadEMDv~lG~EVGysIrfEdC~~~-~T~Lky~tDgmLlrEams~p~l~~y~viiLDeahERtlATDiLmG 180 (699)
T KOG0925|consen 102 VAAMSVAQRVADEMDVTLGEEVGYSIRFEDCTSP-NTLLKYCTDGMLLREAMSDPLLGRYGVIILDEAHERTLATDILMG 180 (699)
T ss_pred HHHHHHHHHHHHHhccccchhccccccccccCCh-hHHHHHhcchHHHHHHhhCcccccccEEEechhhhhhHHHHHHHH
Confidence 9999999999999999999999999999999999 999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHhcCCceEEEeecccchHHHHHHhhcCCCCCCCcccccCCCCCCeEEEECCccccceEEecCCCchhHHHHHHH
Q 006122 186 LLKKIQRCRSDLRLIISSATIEAKSMSAFFHARKGRRGLEGVELVPRLEPAILSVEGRGFNVQIHYVEEPVSDYVQAAVS 265 (660)
Q Consensus 186 ~l~~~~~~~~~~kii~~SAT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~ 265 (660)
+++.+...++++|+|+||||+++++|+.||++.| ++.++| .+|++++|.+.+..||++.++.
T Consensus 181 llk~v~~~rpdLk~vvmSatl~a~Kfq~yf~n~P-----------------ll~vpg-~~PvEi~Yt~e~erDylEaair 242 (699)
T KOG0925|consen 181 LLKEVVRNRPDLKLVVMSATLDAEKFQRYFGNAP-----------------LLAVPG-THPVEIFYTPEPERDYLEAAIR 242 (699)
T ss_pred HHHHHHhhCCCceEEEeecccchHHHHHHhCCCC-----------------eeecCC-CCceEEEecCCCChhHHHHHHH
Confidence 9999999999999999999999999999999998 999999 9999999999999999999999
Q ss_pred HHHHHHhcCCCCcEEEEcCCHHHHHHHHHHHHHHhhhccCCCCCeEEEEccCCCCHHHHhhhcCCCCCC-----CcEEEE
Q 006122 266 TVLLIHDKEPPGDILVFLTGQDDIDATIQLLTEEARTSKKNSSGLIILPLYSGLSRAEQEQVFSPTPRG-----KRKVVI 340 (660)
Q Consensus 266 ~~~~~~~~~~~~~iLVF~~~~~~i~~l~~~L~~~~~~~~~~~~~~~v~~lh~~l~~~~r~~v~~~f~~g-----~~~vlv 340 (660)
++++||..+.+|+||||+++.++|+.+++.+......+..+...+.|.++| +.++.++|++.+.. .+||+|
T Consensus 243 tV~qih~~ee~GDilvFLtgeeeIe~aC~~i~re~~~L~~~~g~l~v~PLy----P~~qq~iFep~p~~~~~~~~RkvVv 318 (699)
T KOG0925|consen 243 TVLQIHMCEEPGDILVFLTGEEEIEDACRKISREVDNLGPQVGPLKVVPLY----PAQQQRIFEPAPEKRNGAYGRKVVV 318 (699)
T ss_pred HHHHHHhccCCCCEEEEecCHHHHHHHHHHHHHHHHhhccccCCceEEecC----chhhccccCCCCcccCCCccceEEE
Confidence 999999999999999999999999999999998888888888899999999 67888999887643 589999
Q ss_pred eCCCcccccCCCCeEEEEeCCCccceeecCCCCcccceeeecCHHhHHHhhcccCCCCCcEEEEccChHHhhhhCCCCCC
Q 006122 341 STNIAETSLTLEGIVYVVDSGFSKQRFYNPISDIENLVVAPISKASARQRAGRAGRVRPGKCYRLYTEEYFVKEIPAEGI 420 (660)
Q Consensus 341 aT~i~e~Gidip~v~~VId~g~~k~~~~~~~~~~~~l~~~~~s~~~~~QR~GRaGR~~~G~~~~l~~~~~~~~~~~~~~~ 420 (660)
+||++|++++|++|.+|||.|+.|+++|||+.+...++..|||++++.||+|||||++||+||+||+++.+..+|.+.+.
T Consensus 319 stniaetsltidgiv~VIDpGf~kqkVYNPRIRvesllv~PISkasA~qR~gragrt~pGkcfrLYte~~~~~em~~~ty 398 (699)
T KOG0925|consen 319 STNIAETSLTIDGIVFVIDPGFSKQKVYNPRIRVESLLVSPISKASAQQRAGRAGRTRPGKCFRLYTEEAFEKEMQPQTY 398 (699)
T ss_pred EecchheeeeeccEEEEecCchhhhcccCcceeeeeeeeccchHhHHHHHhhhccCCCCCceEEeecHHhhhhcCCCCCc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CccccccchhHHHHHHHcCCCCccCCCCCCCCCHHHHHHHHHHHHHCCCCCCCCCcchHHHHHhccCCCChhhhHHHHhh
Q 006122 421 PEMQRSNLVSCVIQLKALGIDNILGFDWPASPPPEAMIRALEVLYSLGVLDDDAKLTSPTGFQVAEIPLEPMISKMILSS 500 (660)
Q Consensus 421 pei~~~~l~~~~l~l~~~~~~~~~~~~~~~~p~~~~~~~al~~L~~lgald~~~~lT~~lG~~~~~lpl~p~~~~~l~~~ 500 (660)
|||++++|.+++|++|.+|++++.+|+|+|||.++++.+|++.|..++|+|++|++| ++|..|++||+||++||||+.+
T Consensus 399 peilrsNL~s~VL~LKklgI~dlvhfdfmDpPAPEtLMrALE~LnYLaaLdDdGnLT-~lG~imSEFPLdPqLAkmLi~S 477 (699)
T KOG0925|consen 399 PEILRSNLSSTVLQLKKLGIDDLVHFDFMDPPAPETLMRALEVLNYLAALDDDGNLT-SLGEIMSEFPLDPQLAKMLIGS 477 (699)
T ss_pred HHHHHHhhHHHHHHHHhcCcccccCCcCCCCCChHHHHHHHHHhhhhhhhCCCcccc-hhhhhhhcCCCChHHHHHHhhc
Confidence 999999999999999999999999999999999999999999999999999999999 6999999999999999999999
Q ss_pred cccCchhHHHHHHhhcccCcccccCc-chHHHHHHHHHhhcCCCCcHHHHHHHHHHHHhcCcchhHHhhccCCHHHHHHH
Q 006122 501 NELGCSEEIITISAVLSIQSIWVSGR-GAQKELDEAKLRFAAAEGDHVTFLNIYKGFLQSCKSSHWCHKNFINYHAMKKV 579 (660)
Q Consensus 501 ~~~~c~~~~~~i~a~ls~~~~f~~~~-~~~~~~~~~~~~~~~~~~D~~~~l~~~~~~~~~~~~~~wc~~~~l~~~~l~~~ 579 (660)
++|+|..|+++|+||||+++.|.+|. +.+++++++++.|++.+|||+|++|+|.+|++++...+||++||||+++|+.|
T Consensus 478 ~efnCsnEiLsisAMLsvPncFvRp~~~a~kaAdeak~~faH~dGDHlTLlnVYhAfkq~~~~~~WC~~~flN~ral~~A 557 (699)
T KOG0925|consen 478 CEFNCSNEILSISAMLSVPNCFVRPTSSASKAADEAKETFAHIDGDHLTLLNVYHAFKQNNEDPNWCYDNFLNYRALKSA 557 (699)
T ss_pred CCCCchHHHHHHHhcccCCccccCCChhHHHHHHHHHHHhccCCcchHHHHHHHHHHHhcCCChhHHHHhcccHHHHHhH
Confidence 99999999999999999999999998 77888999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHcCCcccCCCC----ChHHHHHHHHHhhhhhhhccCCCCCcccccccCCCCcEEEccCCC------Cc
Q 006122 580 IEIREQLRRIAQRIGIVMKSCES----DMQVSLLTLLLVCLERISTLYDFPKLMGTCMPSAGCSFVYHVTCS------PV 649 (660)
Q Consensus 580 ~~ir~ql~~~l~~~~l~~~~~~~----~~~~i~~al~~g~~~~ia~~~~~~~~~~~~~~~~~~~~~~hp~~~------~~ 649 (660)
.++|.||.++|.+++++..+.+. .+.+|||||++|||+++|+..+..+|+.. ..++.+++||+|. |+
T Consensus 558 d~vR~qL~rim~R~~L~~~st~F~S~~y~~nirKALvsgyFmqVA~~~~~~~Ylt~---kdnqvvqLhps~~l~~~PeWV 634 (699)
T KOG0925|consen 558 DNVRQQLLRIMDRFNLPLCSTDFGSRDYYVNIRKALVSGYFMQVAHLERGGHYLTV---KDNQVVQLHPSTCLDHKPEWV 634 (699)
T ss_pred HHHHHHHHHHHHHhcCcccCCCCCChhHHHHHHHHHHHHHHHHHHhhccCCceEEE---ecCceEEeccccccCCCCCeE
Confidence 99999999999999999866433 36789999999999999999888788776 7799999999999 99
Q ss_pred EE----EecCcccc
Q 006122 650 LC----VCTGRFTD 659 (660)
Q Consensus 650 ~~----~~~~~~~~ 659 (660)
|| ++|..|.|
T Consensus 635 lyneFvlt~~N~ir 648 (699)
T KOG0925|consen 635 LYNEFVLTTKNFIR 648 (699)
T ss_pred EEeeEEeeccceee
Confidence 99 67776654
No 5
>PRK11131 ATP-dependent RNA helicase HrpA; Provisional
Probab=100.00 E-value=1.2e-107 Score=935.05 Aligned_cols=574 Identities=37% Similarity=0.609 Sum_probs=526.9
Q ss_pred HHhcCCCcHHHHHHHHHHHhcCCEEEEEcCCCCcHHHHHHHHHHhccccCCCeEEEEeCchHHHHHHHHHHHHHHhCCee
Q 006122 44 KQRQRLPVYKYRTAILYLVETHATTIIVGETGSGKTTQIPQYLKEAGWADGGRVIACTQPRRLAVQAVASRVAEEMGVKV 123 (660)
Q Consensus 44 ~~~~~lPi~~~~~~i~~~l~~~~~vii~apTGsGKT~~ip~~l~~~~~~~~~~~i~v~p~r~la~~~~~~~~~~~~~~~~ 123 (660)
..+.+||++.++++|++++.+++++||+|+|||||||++|+++++.+.... ..|+|+|||++++.++|+|++++++..+
T Consensus 68 ~~~~~LPi~~~r~~Il~ai~~~~VviI~GeTGSGKTTqlPq~lle~g~g~~-g~I~~TQPRRlAArsLA~RVA~El~~~l 146 (1294)
T PRK11131 68 TYPENLPVSQKKQDILEAIRDHQVVIVAGETGSGKTTQLPKICLELGRGVK-GLIGHTQPRRLAARTVANRIAEELETEL 146 (1294)
T ss_pred CCCCCCCHHHHHHHHHHHHHhCCeEEEECCCCCCHHHHHHHHHHHcCCCCC-CceeeCCCcHHHHHHHHHHHHHHHhhhh
Confidence 345679999999999999999999999999999999999999998764332 3689999999999999999999999999
Q ss_pred eeEEeeeeeccccCCCCCceEEEechHHHHHHHhcCCCCCCCcEEEEeCCCcCCcChhHHHHHHHHHHHhcCCceEEEee
Q 006122 124 GEEVGYTIRFEDFTNKDLTAIKFLTDGVLLREMMDDPLLTKYSVIMVDEAHERSISTDILLGLLKKIQRCRSDLRLIISS 203 (660)
Q Consensus 124 ~~~vg~~~~~~~~~~~~~~~I~v~T~~~ll~~l~~~~~l~~~~~iIiDE~Her~~~~d~ll~~l~~~~~~~~~~kii~~S 203 (660)
|..+||.+++++..+. +++|+|+|||+|++.+..++.+.++++|||||||||++++|+++++++.+...++++|+|+||
T Consensus 147 G~~VGY~vrf~~~~s~-~t~I~v~TpG~LL~~l~~d~~Ls~~~~IIIDEAHERsLn~DfLLg~Lk~lL~~rpdlKvILmS 225 (1294)
T PRK11131 147 GGCVGYKVRFNDQVSD-NTMVKLMTDGILLAEIQQDRLLMQYDTIIIDEAHERSLNIDFILGYLKELLPRRPDLKVIITS 225 (1294)
T ss_pred cceeceeecCccccCC-CCCEEEEChHHHHHHHhcCCccccCcEEEecCccccccccchHHHHHHHhhhcCCCceEEEee
Confidence 9999999999998877 899999999999999999999999999999999999999999999999998888999999999
Q ss_pred cccchHHHHHHhhcCCCCCCCcccccCCCCCCeEEEECCccccceEEecCCCc------hhHHHHHHHHHHHHHhcCCCC
Q 006122 204 ATIEAKSMSAFFHARKGRRGLEGVELVPRLEPAILSVEGRGFNVQIHYVEEPV------SDYVQAAVSTVLLIHDKEPPG 277 (660)
Q Consensus 204 AT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~------~~~~~~~~~~~~~~~~~~~~~ 277 (660)
||++.+.|+++|++.+ ++.++|+.||++++|..... .+++...+..+..++ ....|
T Consensus 226 ATid~e~fs~~F~~ap-----------------vI~V~Gr~~pVei~y~p~~~~~~~~~~d~l~~ll~~V~~l~-~~~~G 287 (1294)
T PRK11131 226 ATIDPERFSRHFNNAP-----------------IIEVSGRTYPVEVRYRPIVEEADDTERDQLQAIFDAVDELG-REGPG 287 (1294)
T ss_pred CCCCHHHHHHHcCCCC-----------------EEEEcCccccceEEEeecccccchhhHHHHHHHHHHHHHHh-cCCCC
Confidence 9999999999998766 89999999999999986542 334555555554444 35678
Q ss_pred cEEEEcCCHHHHHHHHHHHHHHhhhccCCCCCeEEEEccCCCCHHHHhhhcCCCCCCCcEEEEeCCCcccccCCCCeEEE
Q 006122 278 DILVFLTGQDDIDATIQLLTEEARTSKKNSSGLIILPLYSGLSRAEQEQVFSPTPRGKRKVVISTNIAETSLTLEGIVYV 357 (660)
Q Consensus 278 ~iLVF~~~~~~i~~l~~~L~~~~~~~~~~~~~~~v~~lh~~l~~~~r~~v~~~f~~g~~~vlvaT~i~e~Gidip~v~~V 357 (660)
+||||+||+++|+.+++.|.+. +.+...+.++||+|++++|.++++. .|.++||||||++|+|||||+|+||
T Consensus 288 dILVFLpg~~EIe~lae~L~~~------~~~~~~VlpLhg~Ls~~eQ~~Vf~~--~g~rkIIVATNIAEtSITIpgI~yV 359 (1294)
T PRK11131 288 DILIFMSGEREIRDTADALNKL------NLRHTEILPLYARLSNSEQNRVFQS--HSGRRIVLATNVAETSLTVPGIKYV 359 (1294)
T ss_pred CEEEEcCCHHHHHHHHHHHHhc------CCCcceEeecccCCCHHHHHHHhcc--cCCeeEEEeccHHhhccccCcceEE
Confidence 9999999999999999999764 2235678999999999999999986 5789999999999999999999999
Q ss_pred EeCCCccceeecCCCCcccceeeecCHHhHHHhhcccCCCCCcEEEEccChHHhhhhCCCCCCCccccccchhHHHHHHH
Q 006122 358 VDSGFSKQRFYNPISDIENLVVAPISKASARQRAGRAGRVRPGKCYRLYTEEYFVKEIPAEGIPEMQRSNLVSCVIQLKA 437 (660)
Q Consensus 358 Id~g~~k~~~~~~~~~~~~l~~~~~s~~~~~QR~GRaGR~~~G~~~~l~~~~~~~~~~~~~~~pei~~~~l~~~~l~l~~ 437 (660)
||+|+.|.++||+..+++.+...|+|+++|.||+|||||.++|.||+||++++|.. ++++..|||+|++|.+++|++++
T Consensus 360 ID~Gl~k~~~Yd~~~~~~~Lp~~~iSkasa~QRaGRAGR~~~G~c~rLyte~d~~~-~~~~~~PEIlR~~L~~viL~lk~ 438 (1294)
T PRK11131 360 IDPGTARISRYSYRTKVQRLPIEPISQASANQRKGRCGRVSEGICIRLYSEDDFLS-RPEFTDPEILRTNLASVILQMTA 438 (1294)
T ss_pred EECCCccccccccccCcccCCeeecCHhhHhhhccccCCCCCcEEEEeCCHHHHHh-hhcccCCccccCCHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999988 99999999999999999999999
Q ss_pred cCCCCccCCCCCCCCCHHHHHHHHHHHHHCCCCCCC-----CCcchHHHHHhccCCCChhhhHHHHhhcccCchhHHHHH
Q 006122 438 LGIDNILGFDWPASPPPEAMIRALEVLYSLGVLDDD-----AKLTSPTGFQVAEIPLEPMISKMILSSNELGCSEEIITI 512 (660)
Q Consensus 438 ~~~~~~~~~~~~~~p~~~~~~~al~~L~~lgald~~-----~~lT~~lG~~~~~lpl~p~~~~~l~~~~~~~c~~~~~~i 512 (660)
+|+.++..|+|++||+.+++.+|++.|..+||||.+ +++| ++|+.|++||+||++||||+.|..++|++++++|
T Consensus 439 lgl~di~~F~fldpP~~~~i~~al~~L~~LgAld~~~~~~~~~LT-~lG~~la~LPldPrlakmLl~a~~~~c~~evl~I 517 (1294)
T PRK11131 439 LGLGDIAAFPFVEAPDKRNIQDGVRLLEELGAITTDEQASAYKLT-PLGRQLAQLPVDPRLARMVLEAQKHGCVREVMII 517 (1294)
T ss_pred cCCCCcceeeCCCCCCHHHHHHHHHHHHHCCCCCccccCCCccCc-HHHHHHHhCCCChHHHHHHHHhhhcCCHHHHHHH
Confidence 999999999999999999999999999999999854 5799 7999999999999999999999999999999999
Q ss_pred HhhcccCcccccCcchHHHHHHHHHhhcCCCCcHHHHHHHHHHHHhcCc------chhHHhhccCCHHHHHHHHHHHHHH
Q 006122 513 SAVLSIQSIWVSGRGAQKELDEAKLRFAAAEGDHVTFLNIYKGFLQSCK------SSHWCHKNFINYHAMKKVIEIREQL 586 (660)
Q Consensus 513 ~a~ls~~~~f~~~~~~~~~~~~~~~~~~~~~~D~~~~l~~~~~~~~~~~------~~~wc~~~~l~~~~l~~~~~ir~ql 586 (660)
+|+||++++|.+|.+.+++++.++++|....|||++++|+|+.|.+..+ .++||++||||+.+|++|.+++.||
T Consensus 518 aA~Lsv~dpf~~p~~~~~~a~~~~~~f~~~~sD~lt~ln~~~~~~~~~~~~s~~~~~~~C~~~~L~~~~l~e~~~i~~QL 597 (1294)
T PRK11131 518 TSALSIQDPRERPMDKQQASDEKHRRFADKESDFLAFVNLWNYLQEQQKALSSNQFRRLCRTDYLNYLRVREWQDIYTQL 597 (1294)
T ss_pred HHHHcCCCcccCCchhHHHHHHHHHhhCCCCCCHHHHHHHHHHHHHHHhhhcchHHHHHHHHhCCCHHHHHHHHHHHHHH
Confidence 9999999999999999899999999999999999999999999975321 3679999999999999999999999
Q ss_pred HHHHHHcCCcccCCCCChHHHHHHHHHhhhhhhhccCCC-CCcccccccCCCCcEEEccCCC-------CcEE
Q 006122 587 RRIAQRIGIVMKSCESDMQVSLLTLLLVCLERISTLYDF-PKLMGTCMPSAGCSFVYHVTCS-------PVLC 651 (660)
Q Consensus 587 ~~~l~~~~l~~~~~~~~~~~i~~al~~g~~~~ia~~~~~-~~~~~~~~~~~~~~~~~hp~~~-------~~~~ 651 (660)
.++++++|+..+++..+++.|++||++||+.|+|+.... ..|.+. +|..|++||+|+ |++|
T Consensus 598 ~~~~~~~g~~~~~~~~~~~~i~~all~G~~~nva~~~~~~~~y~~~----~~~~~~ihP~S~L~~~~p~wvv~ 666 (1294)
T PRK11131 598 RQVVKELGIPVNSEPAEYREIHTALLTGLLSHIGMKDAEKQEYTGA----RNARFSIFPGSGLFKKPPKWVMV 666 (1294)
T ss_pred HHHHHHcCCCCCCCcccHHHHHHHHHhhcHHHHeeccCCCCeEEcc----CCcEEEEcCCccccCCCCCEEEE
Confidence 999999999998888899999999999999999987643 347776 699999999997 6676
No 6
>COG1643 HrpA HrpA-like helicases [DNA replication, recombination, and repair]
Probab=100.00 E-value=1.5e-105 Score=888.62 Aligned_cols=583 Identities=43% Similarity=0.653 Sum_probs=534.6
Q ss_pred ccchHhHHHHhcCCCcHHHHHHHHHHHhcCCEEEEEcCCCCcHHHHHHHHHHhccccCCCeEEEEeCchHHHHHHHHHHH
Q 006122 36 GYGYASIEKQRQRLPVYKYRTAILYLVETHATTIIVGETGSGKTTQIPQYLKEAGWADGGRVIACTQPRRLAVQAVASRV 115 (660)
Q Consensus 36 ~~~~~~~~~~~~~lPi~~~~~~i~~~l~~~~~vii~apTGsGKT~~ip~~l~~~~~~~~~~~i~v~p~r~la~~~~~~~~ 115 (660)
...+..+..++..||++..+++|++++.+++++||+|||||||||++|+++++.++ .+...|+|+||||+||.++|+|+
T Consensus 36 ~~~~~~~~~~~~~LPv~~~~~~i~~ai~~~~vvii~getGsGKTTqlP~~lle~g~-~~~g~I~~tQPRRlAArsvA~Rv 114 (845)
T COG1643 36 SANVPDILEYRSGLPVTAVRDEILKAIEQNQVVIIVGETGSGKTTQLPQFLLEEGL-GIAGKIGCTQPRRLAARSVAERV 114 (845)
T ss_pred ccccchhhhccccCCcHHHHHHHHHHHHhCCEEEEeCCCCCChHHHHHHHHHhhhc-ccCCeEEecCchHHHHHHHHHHH
Confidence 33456778889999999999999999999999999999999999999999999988 34457999999999999999999
Q ss_pred HHHhCCeeeeEEeeeeeccccCCCCCceEEEechHHHHHHHhcCCCCCCCcEEEEeCCCcCCcChhHHHHHHHHHHHhcC
Q 006122 116 AEEMGVKVGEEVGYTIRFEDFTNKDLTAIKFLTDGVLLREMMDDPLLTKYSVIMVDEAHERSISTDILLGLLKKIQRCRS 195 (660)
Q Consensus 116 ~~~~~~~~~~~vg~~~~~~~~~~~~~~~I~v~T~~~ll~~l~~~~~l~~~~~iIiDE~Her~~~~d~ll~~l~~~~~~~~ 195 (660)
+++++..+|..|||.+||++..+. +|+|.|+|+|+|++++++|+.|+.|++|||||+|||++++|+++++++.+...++
T Consensus 115 Aeel~~~~G~~VGY~iRfe~~~s~-~Trik~mTdGiLlrei~~D~~Ls~ys~vIiDEaHERSl~tDilLgllk~~~~~rr 193 (845)
T COG1643 115 AEELGEKLGETVGYSIRFESKVSP-RTRIKVMTDGILLREIQNDPLLSGYSVVIIDEAHERSLNTDILLGLLKDLLARRR 193 (845)
T ss_pred HHHhCCCcCceeeEEEEeeccCCC-CceeEEeccHHHHHHHhhCcccccCCEEEEcchhhhhHHHHHHHHHHHHHHhhcC
Confidence 999999999999999999999998 9999999999999999999999999999999999999999999999999777555
Q ss_pred -CceEEEeecccchHHHHHHhhcCCCCCCCcccccCCCCCCeEEEECCccccceEEecCCCchhH-HHHHHHHHHHHHhc
Q 006122 196 -DLRLIISSATIEAKSMSAFFHARKGRRGLEGVELVPRLEPAILSVEGRGFNVQIHYVEEPVSDY-VQAAVSTVLLIHDK 273 (660)
Q Consensus 196 -~~kii~~SAT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~-~~~~~~~~~~~~~~ 273 (660)
++|+|+||||+|.++|++||++++ ++.++|+.|||+++|......++ +...+..++.++..
T Consensus 194 ~DLKiIimSATld~~rfs~~f~~ap-----------------vi~i~GR~fPVei~Y~~~~~~d~~l~~ai~~~v~~~~~ 256 (845)
T COG1643 194 DDLKLIIMSATLDAERFSAYFGNAP-----------------VIEIEGRTYPVEIRYLPEAEADYILLDAIVAAVDIHLR 256 (845)
T ss_pred CCceEEEEecccCHHHHHHHcCCCC-----------------EEEecCCccceEEEecCCCCcchhHHHHHHHHHHHhcc
Confidence 799999999999999999999988 99999999999999999888888 99999999999999
Q ss_pred CCCCcEEEEcCCHHHHHHHHHHHHHHhhhccCCCCCeEEEEccCCCCHHHHhhhcCCCCCCCcEEEEeCCCcccccCCCC
Q 006122 274 EPPGDILVFLTGQDDIDATIQLLTEEARTSKKNSSGLIILPLYSGLSRAEQEQVFSPTPRGKRKVVISTNIAETSLTLEG 353 (660)
Q Consensus 274 ~~~~~iLVF~~~~~~i~~l~~~L~~~~~~~~~~~~~~~v~~lh~~l~~~~r~~v~~~f~~g~~~vlvaT~i~e~Gidip~ 353 (660)
+..|+||||+||.++|+.+++.|.+. .+ .+...|.++||.|+.++|.++|+..+.|++|||+||||||+|||||+
T Consensus 257 ~~~GdILvFLpG~~EI~~~~~~L~~~--~l---~~~~~i~PLy~~L~~~eQ~rvF~p~~~~~RKVVlATNIAETSLTI~g 331 (845)
T COG1643 257 EGSGSILVFLPGQREIERTAEWLEKA--EL---GDDLEILPLYGALSAEEQVRVFEPAPGGKRKVVLATNIAETSLTIPG 331 (845)
T ss_pred CCCCCEEEECCcHHHHHHHHHHHHhc--cc---cCCcEEeeccccCCHHHHHhhcCCCCCCcceEEEEccccccceeeCC
Confidence 99999999999999999999999881 11 14789999999999999999999999999999999999999999999
Q ss_pred eEEEEeCCCccceeecCCCCcccceeeecCHHhHHHhhcccCCCCCcEEEEccChHHhhhhCCCCCCCccccccchhHHH
Q 006122 354 IVYVVDSGFSKQRFYNPISDIENLVVAPISKASARQRAGRAGRVRPGKCYRLYTEEYFVKEIPAEGIPEMQRSNLVSCVI 433 (660)
Q Consensus 354 v~~VId~g~~k~~~~~~~~~~~~l~~~~~s~~~~~QR~GRaGR~~~G~~~~l~~~~~~~~~~~~~~~pei~~~~l~~~~l 433 (660)
|+||||+|+.|++.||+.+|+..|.++|+|++++.||+|||||+.||+||+||++++|.. ++.++.|||++++|.+++|
T Consensus 332 Ir~VIDsG~ak~~~y~~~~g~~~L~~~~ISqAsA~QRaGRAGR~~pGicyRLyse~~~~~-~~~~t~PEIlrtdLs~~vL 410 (845)
T COG1643 332 IRYVIDSGLAKEKRYDPRTGLTRLETEPISKASADQRAGRAGRTGPGICYRLYSEEDFLA-FPEFTLPEILRTDLSGLVL 410 (845)
T ss_pred eEEEecCCcccccccccccCceeeeEEEechhhhhhhccccccCCCceEEEecCHHHHHh-cccCCChhhhhcchHHHHH
Confidence 999999999999999999999999999999999999999999999999999999999996 9999999999999999999
Q ss_pred HHHHcCCC-CccCCCCCCCCCHHHHHHHHHHHHHCCCCCCCCCcchHHHHHhccCCCChhhhHHHHhhcccCchhHHHHH
Q 006122 434 QLKALGID-NILGFDWPASPPPEAMIRALEVLYSLGVLDDDAKLTSPTGFQVAEIPLEPMISKMILSSNELGCSEEIITI 512 (660)
Q Consensus 434 ~l~~~~~~-~~~~~~~~~~p~~~~~~~al~~L~~lgald~~~~lT~~lG~~~~~lpl~p~~~~~l~~~~~~~c~~~~~~i 512 (660)
+++++|++ ++..|+|+|+|+..++..|++.|..+||+|++|.+| ++|+.|+.||+||++|+||+.+..++|.+++++|
T Consensus 411 ~l~~~G~~~d~~~f~fld~P~~~~i~~A~~~L~~LGAld~~g~LT-~lG~~ms~lpldprLA~mLl~a~~~g~~~e~~~I 489 (845)
T COG1643 411 QLKSLGIGQDIAPFPFLDPPPEAAIQAALTLLQELGALDDSGKLT-PLGKQMSLLPLDPRLARMLLTAPEGGCLGEAATI 489 (845)
T ss_pred HHHhcCCCCCcccCccCCCCChHHHHHHHHHHHHcCCcCCCCCCC-HHHHHHHhCCCChHHHHHHHhccccCcHHHHHHH
Confidence 99999995 999999999999999999999999999999999999 7999999999999999999999999999999999
Q ss_pred HhhcccCc---ccccCcchHH---HHHHHH-HhhcC---CCCcHHHHHHHHHHHHhcC------cchhHHhhccCCHHHH
Q 006122 513 SAVLSIQS---IWVSGRGAQK---ELDEAK-LRFAA---AEGDHVTFLNIYKGFLQSC------KSSHWCHKNFINYHAM 576 (660)
Q Consensus 513 ~a~ls~~~---~f~~~~~~~~---~~~~~~-~~~~~---~~~D~~~~l~~~~~~~~~~------~~~~wc~~~~l~~~~l 576 (660)
+|+||+++ .|..+.+.++ +.+.++ .++.. ..+||++++++|..|.... ...+||..++++.++|
T Consensus 490 as~Ls~~~~~s~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~d~~~ll~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~L 569 (845)
T COG1643 490 ASMLSEQDRESDFSRDVKLRKQRTAQDLLKRLKRRNAADPRGDHLLLLEAFPDRIARKRAKGEYLRANGCRAMLFPTKAL 569 (845)
T ss_pred HHhhccCCCcchhccccchhhHHHHHHHHHHHHhccCCCcchHHHHHHHHHHHHHHhhhccchhhHhcChhhhcCChhHH
Confidence 99999998 6777776555 344343 33444 5799999999999998776 4789999999999999
Q ss_pred HHHHHHHHHHHHHHHH-cCCcccCCCC------------------ChHHHHHHHHHhhhhhhhccCCCCC-cccccccCC
Q 006122 577 KKVIEIREQLRRIAQR-IGIVMKSCES------------------DMQVSLLTLLLVCLERISTLYDFPK-LMGTCMPSA 636 (660)
Q Consensus 577 ~~~~~ir~ql~~~l~~-~~l~~~~~~~------------------~~~~i~~al~~g~~~~ia~~~~~~~-~~~~~~~~~ 636 (660)
.++..++.++...+.+ .+........ .|+.+++++++|+..++++...... ++.+ +.
T Consensus 570 ~~~~~i~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~l~a~~~~~~~~~~~~~~~~~~~---~~ 646 (845)
T COG1643 570 SRAPWIIAALLVQTSALAGRILAAAEIDEDEWAAQHLPEHCYSEPIWDDIRGALAAGRKLNIAQLQLDGRPYVTL---SD 646 (845)
T ss_pred HhhHHHHHHHHHhhhccccchhhhcccCcchhhhhhhhhhhccchhHHHHhhhhhhheecceeeeeccccccccC---CC
Confidence 9999999999988876 4443332222 2678999999999999999874444 5554 66
Q ss_pred CCcEEEccCCC
Q 006122 637 GCSFVYHVTCS 647 (660)
Q Consensus 637 ~~~~~~hp~~~ 647 (660)
++.+..||+++
T Consensus 647 ~~~v~~~~~~v 657 (845)
T COG1643 647 NTPVFAHPSSV 657 (845)
T ss_pred CceeEecchhH
Confidence 89999999995
No 7
>TIGR01967 DEAH_box_HrpA ATP-dependent helicase HrpA. This model represents HrpA, one of two related but uncharacterized DEAH-box ATP-dependent helicases in many Proteobacteria and a few high-GC Gram-positive bacteria. HrpA is about 1300 amino acids long, while its paralog HrpB, also uncharacterized, is about 800 amino acids long. Related characterized eukarotic proteins are RNA helicases associated with pre-mRNA processing.
Probab=100.00 E-value=1.6e-104 Score=913.25 Aligned_cols=574 Identities=38% Similarity=0.628 Sum_probs=527.7
Q ss_pred HHhcCCCcHHHHHHHHHHHhcCCEEEEEcCCCCcHHHHHHHHHHhccccCCCeEEEEeCchHHHHHHHHHHHHHHhCCee
Q 006122 44 KQRQRLPVYKYRTAILYLVETHATTIIVGETGSGKTTQIPQYLKEAGWADGGRVIACTQPRRLAVQAVASRVAEEMGVKV 123 (660)
Q Consensus 44 ~~~~~lPi~~~~~~i~~~l~~~~~vii~apTGsGKT~~ip~~l~~~~~~~~~~~i~v~p~r~la~~~~~~~~~~~~~~~~ 123 (660)
.++..||++.++++|++++.+++++||+|+|||||||++|+++++.+....+ .|+|+|||++++.++|+|+++++|..+
T Consensus 61 ~~~~~LPi~~~~~~Il~~l~~~~vvii~g~TGSGKTTqlPq~lle~~~~~~~-~I~~tQPRRlAA~svA~RvA~elg~~l 139 (1283)
T TIGR01967 61 RYPDNLPVSAKREDIAEAIAENQVVIIAGETGSGKTTQLPKICLELGRGSHG-LIGHTQPRRLAARTVAQRIAEELGTPL 139 (1283)
T ss_pred cCCCCCCHHHHHHHHHHHHHhCceEEEeCCCCCCcHHHHHHHHHHcCCCCCc-eEecCCccHHHHHHHHHHHHHHhCCCc
Confidence 4557799999999999999999999999999999999999999987654333 688999999999999999999999999
Q ss_pred eeEEeeeeeccccCCCCCceEEEechHHHHHHHhcCCCCCCCcEEEEeCCCcCCcChhHHHHHHHHHHHhcCCceEEEee
Q 006122 124 GEEVGYTIRFEDFTNKDLTAIKFLTDGVLLREMMDDPLLTKYSVIMVDEAHERSISTDILLGLLKKIQRCRSDLRLIISS 203 (660)
Q Consensus 124 ~~~vg~~~~~~~~~~~~~~~I~v~T~~~ll~~l~~~~~l~~~~~iIiDE~Her~~~~d~ll~~l~~~~~~~~~~kii~~S 203 (660)
|..+||.+++++..+. +++|+|+|+|+|++.+..++.+.++++|||||+|||++++|+++++++.+...++++|+|+||
T Consensus 140 G~~VGY~vR~~~~~s~-~T~I~~~TdGiLLr~l~~d~~L~~~~~IIIDEaHERsL~~D~LL~lLk~il~~rpdLKlIlmS 218 (1283)
T TIGR01967 140 GEKVGYKVRFHDQVSS-NTLVKLMTDGILLAETQQDRFLSRYDTIIIDEAHERSLNIDFLLGYLKQLLPRRPDLKIIITS 218 (1283)
T ss_pred ceEEeeEEcCCcccCC-CceeeeccccHHHHHhhhCcccccCcEEEEcCcchhhccchhHHHHHHHHHhhCCCCeEEEEe
Confidence 9999999999999888 899999999999999999999999999999999999999999999999999889999999999
Q ss_pred cccchHHHHHHhhcCCCCCCCcccccCCCCCCeEEEECCccccceEEecCCCc------hhHHHHHHHHHHHHHhcCCCC
Q 006122 204 ATIEAKSMSAFFHARKGRRGLEGVELVPRLEPAILSVEGRGFNVQIHYVEEPV------SDYVQAAVSTVLLIHDKEPPG 277 (660)
Q Consensus 204 AT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~------~~~~~~~~~~~~~~~~~~~~~ 277 (660)
||++.+.|++||++.+ ++.++|+.||++++|..... .++.+.....+..++. ...|
T Consensus 219 ATld~~~fa~~F~~ap-----------------vI~V~Gr~~PVev~Y~~~~~~~~~~~~~~~~~i~~~I~~l~~-~~~G 280 (1283)
T TIGR01967 219 ATIDPERFSRHFNNAP-----------------IIEVSGRTYPVEVRYRPLVEEQEDDDLDQLEAILDAVDELFA-EGPG 280 (1283)
T ss_pred CCcCHHHHHHHhcCCC-----------------EEEECCCcccceeEEecccccccchhhhHHHHHHHHHHHHHh-hCCC
Confidence 9999999999998776 89999999999999976432 2344445555555444 3568
Q ss_pred cEEEEcCCHHHHHHHHHHHHHHhhhccCCCCCeEEEEccCCCCHHHHhhhcCCCCCCCcEEEEeCCCcccccCCCCeEEE
Q 006122 278 DILVFLTGQDDIDATIQLLTEEARTSKKNSSGLIILPLYSGLSRAEQEQVFSPTPRGKRKVVISTNIAETSLTLEGIVYV 357 (660)
Q Consensus 278 ~iLVF~~~~~~i~~l~~~L~~~~~~~~~~~~~~~v~~lh~~l~~~~r~~v~~~f~~g~~~vlvaT~i~e~Gidip~v~~V 357 (660)
+||||+||+++|+.+++.|.+. ..+++.+.++||+|+.++|.++|+.+ +.++||||||++|+|||||+|+||
T Consensus 281 dILVFLpg~~EI~~l~~~L~~~------~~~~~~VlpLhg~Ls~~eQ~~vf~~~--~~rkIVLATNIAEtSLTIpgV~yV 352 (1283)
T TIGR01967 281 DILIFLPGEREIRDAAEILRKR------NLRHTEILPLYARLSNKEQQRVFQPH--SGRRIVLATNVAETSLTVPGIHYV 352 (1283)
T ss_pred CEEEeCCCHHHHHHHHHHHHhc------CCCCcEEEeccCCCCHHHHHHHhCCC--CCceEEEeccHHHhccccCCeeEE
Confidence 9999999999999999999865 22357899999999999999999875 358999999999999999999999
Q ss_pred EeCCCccceeecCCCCcccceeeecCHHhHHHhhcccCCCCCcEEEEccChHHhhhhCCCCCCCccccccchhHHHHHHH
Q 006122 358 VDSGFSKQRFYNPISDIENLVVAPISKASARQRAGRAGRVRPGKCYRLYTEEYFVKEIPAEGIPEMQRSNLVSCVIQLKA 437 (660)
Q Consensus 358 Id~g~~k~~~~~~~~~~~~l~~~~~s~~~~~QR~GRaGR~~~G~~~~l~~~~~~~~~~~~~~~pei~~~~l~~~~l~l~~ 437 (660)
||+|+.|.+.||+.++++.+.+.|+|+++|.||+|||||.++|.||+||+++++.. ++++..|||++.+|.+++|++++
T Consensus 353 IDsGl~r~~~yd~~~~~~~L~~~~ISkasa~QRaGRAGR~~~G~cyRLyte~~~~~-~~~~~~PEIlR~~L~~viL~l~~ 431 (1283)
T TIGR01967 353 IDTGTARISRYSYRTKVQRLPIEPISQASANQRKGRCGRVAPGICIRLYSEEDFNS-RPEFTDPEILRTNLASVILQMLA 431 (1283)
T ss_pred EeCCCccccccccccCccccCCccCCHHHHHHHhhhhCCCCCceEEEecCHHHHHh-hhhccCcccccccHHHHHHHHHh
Confidence 99999999999999999999999999999999999999999999999999999988 99999999999999999999999
Q ss_pred cCCCCccCCCCCCCCCHHHHHHHHHHHHHCCCCCCCC---CcchHHHHHhccCCCChhhhHHHHhhcccCchhHHHHHHh
Q 006122 438 LGIDNILGFDWPASPPPEAMIRALEVLYSLGVLDDDA---KLTSPTGFQVAEIPLEPMISKMILSSNELGCSEEIITISA 514 (660)
Q Consensus 438 ~~~~~~~~~~~~~~p~~~~~~~al~~L~~lgald~~~---~lT~~lG~~~~~lpl~p~~~~~l~~~~~~~c~~~~~~i~a 514 (660)
+|+.++..|+|++||+.+++.+|++.|..+||||++| ++| ++|+.|+.||++|++||||+.|..++|++++++|+|
T Consensus 432 lg~~di~~f~fldpP~~~~i~~A~~~L~~LGAld~~~~~~~LT-~lGr~ma~LPldPrlarmLl~a~~~gcl~e~l~IaA 510 (1283)
T TIGR01967 432 LRLGDIAAFPFIEAPDPRAIRDGFRLLEELGALDDDEAEPQLT-PIGRQLAQLPVDPRLARMLLEAHRLGCLQEVLIIAS 510 (1283)
T ss_pred cCCCCcccccCCCCCCHHHHHHHHHHHHHCCCCCCCCCCcccc-HHHHHHhhcCCChHHHHHHHHhhhcCCHHHHHHHHH
Confidence 9999999999999999999999999999999999988 799 799999999999999999999999999999999999
Q ss_pred hcccCcccccCcchHHHHHHHHHhhcCCCCcHHHHHHHHHHHHhcC------cchhHHhhccCCHHHHHHHHHHHHHHHH
Q 006122 515 VLSIQSIWVSGRGAQKELDEAKLRFAAAEGDHVTFLNIYKGFLQSC------KSSHWCHKNFINYHAMKKVIEIREQLRR 588 (660)
Q Consensus 515 ~ls~~~~f~~~~~~~~~~~~~~~~~~~~~~D~~~~l~~~~~~~~~~------~~~~wc~~~~l~~~~l~~~~~ir~ql~~ 588 (660)
+||++++|..|.+.+++++.++++|....|||++++|+|+.|.+.. ...+||++||||+.+|+++.++++||.+
T Consensus 511 ~Ls~~dp~~~p~~~~~~a~~~~~~f~~~~sD~l~~L~~~~~~~~~~~~~~~~~~~~~C~~~fL~~~~l~~~~~i~~QL~~ 590 (1283)
T TIGR01967 511 ALSIQDPRERPMEKQQAADQAHARFKDPRSDFLSRVNLWRHIEEQRQALSANQFRNACRKQYLNYLRVREWQDIYRQLTQ 590 (1283)
T ss_pred HHcCCCcCCCcchhHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHhhhhccchHHHHHHHHcCcCHHHHHHHHHHHHHHHH
Confidence 9999999999999999999999999999999999999999997642 2368999999999999999999999999
Q ss_pred HHHHcCCcccCCCCChHHHHHHHHHhhhhhhhccCCCCCcccccccCCCCcEEEccCCC-------CcEE
Q 006122 589 IAQRIGIVMKSCESDMQVSLLTLLLVCLERISTLYDFPKLMGTCMPSAGCSFVYHVTCS-------PVLC 651 (660)
Q Consensus 589 ~l~~~~l~~~~~~~~~~~i~~al~~g~~~~ia~~~~~~~~~~~~~~~~~~~~~~hp~~~-------~~~~ 651 (660)
+++++|+..+++..+++.+++||++||++|||+......|.+. +|..+++||+|+ |++|
T Consensus 591 ~~~~~~~~~~~~~~~~~~i~~~l~~g~~~~iA~~~~~~~y~~~----~g~~~~ihP~S~L~~~~p~wvv~ 656 (1283)
T TIGR01967 591 VVKELGLKLNEEPADYDAIHKALLSGLLSQIGMKDEKHEYDGA----RGRKFHIFPGSPLFKKPPKWVMA 656 (1283)
T ss_pred HHHHcCCCcCCCCccHHHHHHHHHHhhHHHHheeCCCCcEEec----CCcEEEECCCccccCCCCCEEEE
Confidence 9999998887777778889999999999999998765668776 688999999997 6666
No 8
>KOG0926 consensus DEAH-box RNA helicase [RNA processing and modification; Translation, ribosomal structure and biogenesis]
Probab=100.00 E-value=3.4e-103 Score=821.46 Aligned_cols=593 Identities=38% Similarity=0.594 Sum_probs=531.4
Q ss_pred HhHHHHhcCCCcHHHHHHHHHHHhcCCEEEEEcCCCCcHHHHHHHHHHhccccCC----CeEEEEeCchHHHHHHHHHHH
Q 006122 40 ASIEKQRQRLPVYKYRTAILYLVETHATTIIVGETGSGKTTQIPQYLKEAGWADG----GRVIACTQPRRLAVQAVASRV 115 (660)
Q Consensus 40 ~~~~~~~~~lPi~~~~~~i~~~l~~~~~vii~apTGsGKT~~ip~~l~~~~~~~~----~~~i~v~p~r~la~~~~~~~~ 115 (660)
.++.+.|..|||..-..+|+++|..|.++||+|.||||||||+||+++++++... +..|.+|+|||+|+...|+|+
T Consensus 246 ~EIQ~sR~~LPI~aeEq~IMEaIn~n~vvIIcGeTGsGKTTQvPQFLYEAGf~s~~~~~~gmIGITqPRRVAaiamAkRV 325 (1172)
T KOG0926|consen 246 AEIQESRLDLPIVAEEQRIMEAINENPVVIICGETGSGKTTQVPQFLYEAGFASEQSSSPGMIGITQPRRVAAIAMAKRV 325 (1172)
T ss_pred HHHHHHHhcCchhHHHHHHHHHhhcCCeEEEecCCCCCccccchHHHHHcccCCccCCCCCeeeecCchHHHHHHHHHHH
Confidence 6789999999999999999999999999999999999999999999999998765 668999999999999999999
Q ss_pred HHHhCCeeeeEEeeeeeccccCCCCCceEEEechHHHHHHHhcCCCCCCCcEEEEeCCCcCCcChhHHHHHHHHHHHhc-
Q 006122 116 AEEMGVKVGEEVGYTIRFEDFTNKDLTAIKFLTDGVLLREMMDDPLLTKYSVIMVDEAHERSISTDILLGLLKKIQRCR- 194 (660)
Q Consensus 116 ~~~~~~~~~~~vg~~~~~~~~~~~~~~~I~v~T~~~ll~~l~~~~~l~~~~~iIiDE~Her~~~~d~ll~~l~~~~~~~- 194 (660)
+.+++. .|..|||++|++....+ .+.|.|+|+|.|++.+.+|.+|.+|++|||||||||++++|.+.+++.++...|
T Consensus 326 a~EL~~-~~~eVsYqIRfd~ti~e-~T~IkFMTDGVLLrEi~~DflL~kYSvIIlDEAHERSvnTDILiGmLSRiV~LR~ 403 (1172)
T KOG0926|consen 326 AFELGV-LGSEVSYQIRFDGTIGE-DTSIKFMTDGVLLREIENDFLLTKYSVIILDEAHERSVNTDILIGMLSRIVPLRQ 403 (1172)
T ss_pred HHHhcc-CccceeEEEEeccccCC-CceeEEecchHHHHHHHHhHhhhhceeEEechhhhccchHHHHHHHHHHHHHHHH
Confidence 999998 89999999999999999 999999999999999999999999999999999999999999999999987654
Q ss_pred ---------CCceEEEeecccchHHHHHHhhcCCCCCCCcccccCCCCCCeEEEECCccccceEEecCCCchhHHHHHHH
Q 006122 195 ---------SDLRLIISSATIEAKSMSAFFHARKGRRGLEGVELVPRLEPAILSVEGRGFNVQIHYVEEPVSDYVQAAVS 265 (660)
Q Consensus 195 ---------~~~kii~~SAT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~ 265 (660)
..+|+|+||||+-+++|.+ +. .+.+ +.|+++.++.|+|||.+||......||+..+..
T Consensus 404 k~~ke~~~~kpLKLIIMSATLRVsDFte---nk---------~LFp-i~pPlikVdARQfPVsIHF~krT~~DYi~eAfr 470 (1172)
T KOG0926|consen 404 KYYKEQCQIKPLKLIIMSATLRVSDFTE---NK---------RLFP-IPPPLIKVDARQFPVSIHFNKRTPDDYIAEAFR 470 (1172)
T ss_pred HHhhhhcccCceeEEEEeeeEEeccccc---Cc---------eecC-CCCceeeeecccCceEEEeccCCCchHHHHHHH
Confidence 3789999999997776652 10 1112 344599999999999999999999999999999
Q ss_pred HHHHHHhcCCCCcEEEEcCCHHHHHHHHHHHHHHhhhc------------------------------------------
Q 006122 266 TVLLIHDKEPPGDILVFLTGQDDIDATIQLLTEEARTS------------------------------------------ 303 (660)
Q Consensus 266 ~~~~~~~~~~~~~iLVF~~~~~~i~~l~~~L~~~~~~~------------------------------------------ 303 (660)
....||..-++|.||||++|+.+++.+++.|++.++..
T Consensus 471 Ktc~IH~kLP~G~ILVFvTGQqEV~qL~~kLRK~~p~~f~~~k~~k~~k~~~e~k~~~s~~~~~~k~~dfe~Ed~~~~~e 550 (1172)
T KOG0926|consen 471 KTCKIHKKLPPGGILVFVTGQQEVDQLCEKLRKRFPESFGGVKMKKNVKAFKELKENPSDIGDSNKTDDFEEEDMYESDE 550 (1172)
T ss_pred HHHHHhhcCCCCcEEEEEeChHHHHHHHHHHHhhCccccccchhhhhhhhccccccchhhhccCcccccchhcccccchh
Confidence 99999999999999999999999999999999884410
Q ss_pred ------------------------------------------------cCCCCCeEEEEccCCCCHHHHhhhcCCCCCCC
Q 006122 304 ------------------------------------------------KKNSSGLIILPLYSGLSRAEQEQVFSPTPRGK 335 (660)
Q Consensus 304 ------------------------------------------------~~~~~~~~v~~lh~~l~~~~r~~v~~~f~~g~ 335 (660)
......+.|+++||-|+.++|.+||+..+.|.
T Consensus 551 d~d~~~~~~~~~~~raa~~~~~De~~~~nge~e~d~~e~~~E~~~~~~~~~~~pLyvLPLYSLLs~~~Q~RVF~~~p~g~ 630 (1172)
T KOG0926|consen 551 DIDQELVDSGFASLRAAFNALADENGSVNGEPEKDESEEGQEAEQGKGKFSPGPLYVLPLYSLLSTEKQMRVFDEVPKGE 630 (1172)
T ss_pred hhhhhhhcccchhhhhhhhccccccccccCCcccchhhhchhhhhccCCCCCCceEEeehhhhcCHHHhhhhccCCCCCc
Confidence 00112456999999999999999999999999
Q ss_pred cEEEEeCCCcccccCCCCeEEEEeCCCccceeecCCCCcccceeeecCHHhHHHhhcccCCCCCcEEEEccChHHhhhhC
Q 006122 336 RKVVISTNIAETSLTLEGIVYVVDSGFSKQRFYNPISDIENLVVAPISKASARQRAGRAGRVRPGKCYRLYTEEYFVKEI 415 (660)
Q Consensus 336 ~~vlvaT~i~e~Gidip~v~~VId~g~~k~~~~~~~~~~~~l~~~~~s~~~~~QR~GRaGR~~~G~~~~l~~~~~~~~~~ 415 (660)
+-+|||||+||+++|||+|+||||+|+.|.+.||..+|++.+.+.|+|++++.||+|||||.+||+|||||+...|++.+
T Consensus 631 RLcVVaTNVAETSLTIPgIkYVVD~Gr~K~R~Yd~~TGV~~FeV~wiSkASadQRAGRAGRtgpGHcYRLYSSAVf~~~F 710 (1172)
T KOG0926|consen 631 RLCVVATNVAETSLTIPGIKYVVDCGRVKERLYDSKTGVSSFEVDWISKASADQRAGRAGRTGPGHCYRLYSSAVFSNDF 710 (1172)
T ss_pred eEEEEeccchhcccccCCeeEEEeccchhhhccccccCceeEEEEeeeccccchhccccCCCCCCceeehhhhHHhhcch
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999889
Q ss_pred CCCCCCccccccchhHHHHHHHcCCCCccCCCCCCCCCHHHHHHHHHHHHHCCCCCCCCCcchHHHHHhccCCCChhhhH
Q 006122 416 PAEGIPEMQRSNLVSCVIQLKALGIDNILGFDWPASPPPEAMIRALEVLYSLGVLDDDAKLTSPTGFQVAEIPLEPMISK 495 (660)
Q Consensus 416 ~~~~~pei~~~~l~~~~l~l~~~~~~~~~~~~~~~~p~~~~~~~al~~L~~lgald~~~~lT~~lG~~~~~lpl~p~~~~ 495 (660)
+++..|||++.+.++++|++|+|+|+++.+|+|++||.+.+++.|.+.|..+||||.+|.+| ++|+.||.||+.|+++|
T Consensus 711 e~fS~PEIlk~Pve~lvLqMKsMnI~kVvnFPFPtpPd~~~L~~Aer~L~~LgALd~~g~lT-~lGk~mS~FPlsPrfsK 789 (1172)
T KOG0926|consen 711 EEFSLPEILKKPVESLVLQMKSMNIDKVVNFPFPTPPDRSALEKAERRLKALGALDSNGGLT-KLGKAMSLFPLSPRFSK 789 (1172)
T ss_pred hhhccHHHhhCcHHHHHHHHHhcCccceecCCCCCCccHHHHHHHHHHHHHhccccccCCcc-cccchhcccccChhHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999 79999999999999999
Q ss_pred HHHhhcccCchhHHHHHHhhcccCcccccCc-------------ch-------------------HHHHHHHHHhhcCCC
Q 006122 496 MILSSNELGCSEEIITISAVLSIQSIWVSGR-------------GA-------------------QKELDEAKLRFAAAE 543 (660)
Q Consensus 496 ~l~~~~~~~c~~~~~~i~a~ls~~~~f~~~~-------------~~-------------------~~~~~~~~~~~~~~~ 543 (660)
||+.+.+.+|+...+.++++||+..+|+.-. ++ ++....++.+|....
T Consensus 790 mL~~~~Q~~~lpy~i~lvsaLsv~e~~i~~~~ll~n~~~r~~~~eE~d~~~~de~~~d~~~K~~rr~~~~aa~~rf~~l~ 869 (1172)
T KOG0926|consen 790 MLATSDQHNLLPYNIALVSALSVYEVLIVAASLLPNPLIREFEPEEKDLIKDDETVEDKELKKRRREKSKAARSRFSNLD 869 (1172)
T ss_pred HHHHHHhhcchhHHHHHHHHHhccchhhhhhhcccccccccCCcchhhccccccccccHHHHHHHHHHHHHHHhhhccCC
Confidence 9999999999999999999999987775321 01 011223456677778
Q ss_pred CcHHHHHHHHHHHHhcCcchhHHhhccCCHHHHHHHHHHHHHHHHHHHHcCCcc----------cCCCCChHHHHHHHHH
Q 006122 544 GDHVTFLNIYKGFLQSCKSSHWCHKNFINYHAMKKVIEIREQLRRIAQRIGIVM----------KSCESDMQVSLLTLLL 613 (660)
Q Consensus 544 ~D~~~~l~~~~~~~~~~~~~~wc~~~~l~~~~l~~~~~ir~ql~~~l~~~~l~~----------~~~~~~~~~i~~al~~ 613 (660)
||-|++|.+...+...++...||..|||+.++|.+++++|+||.+++.+.++.. ++.+.....+|++||+
T Consensus 870 sd~l~Ll~Av~a~ey~~~~~rfc~~ngLr~Kam~Ev~KLR~QL~~lv~~~~i~~v~~~~d~~l~ppt~~q~~lLrQ~i~A 949 (1172)
T KOG0926|consen 870 SDALVLLSAVSAAEYAENGMRFCEANGLRLKAMEEVRKLRKQLTNLVNHGNIQDVEKSWDLTLKPPTDTQAKLLRQMICA 949 (1172)
T ss_pred ccHHHHHHHHHHHHhhhhcchhHHhcchHHHHHHHHHHHHHHHHHHHHHhHHHHHHHhcccCCCCCchHHHHHHHHHHHH
Confidence 999999999999988888778999999999999999999999999987544332 1122235579999999
Q ss_pred hhhhhhhccCCCCCcccccccCCCCcEEEccCCC-------CcEE
Q 006122 614 VCLERISTLYDFPKLMGTCMPSAGCSFVYHVTCS-------PVLC 651 (660)
Q Consensus 614 g~~~~ia~~~~~~~~~~~~~~~~~~~~~~hp~~~-------~~~~ 651 (660)
||.+|+|+..+--.|-.. ..+.++++||.|+ |++|
T Consensus 950 g~~DrVArk~~~~~y~~~---~i~~~~fl~~~svl~~~ape~viY 991 (1172)
T KOG0926|consen 950 GFADRVARKVDATEYDAA---KIQEPVFLHRWSVLINSAPELVIY 991 (1172)
T ss_pred HHHHHHHHhccccccchh---hhcCceeeeehhhhhccCccceeh
Confidence 999999997655444333 4577999999999 7888
No 9
>KOG0920 consensus ATP-dependent RNA helicase A [RNA processing and modification]
Probab=100.00 E-value=3.3e-102 Score=856.29 Aligned_cols=594 Identities=36% Similarity=0.584 Sum_probs=533.8
Q ss_pred CCCCccchHhHHHHhcCCCcHHHHHHHHHHHhcCCEEEEEcCCCCcHHHHHHHHHHhccccCCC-eEEEEeCchHHHHHH
Q 006122 32 ASSIGYGYASIEKQRQRLPVYKYRTAILYLVETHATTIIVGETGSGKTTQIPQYLKEAGWADGG-RVIACTQPRRLAVQA 110 (660)
Q Consensus 32 ~~~~~~~~~~~~~~~~~lPi~~~~~~i~~~l~~~~~vii~apTGsGKT~~ip~~l~~~~~~~~~-~~i~v~p~r~la~~~ 110 (660)
.+-.+..|+.+.+.|.+||+++.+++|+++++++++++|+|+||||||||+||++++..+..++ ..|+||||||++|.+
T Consensus 155 ~~~~s~~~~~~~~~R~~LPa~~~r~~Il~~i~~~qVvvIsGeTGcGKTTQvpQfiLd~~~~~~~~~~IicTQPRRIsAIs 234 (924)
T KOG0920|consen 155 EPKKSESYKEMLRFRESLPAYKMRDTILDAIEENQVVVISGETGCGKTTQVPQFILDEAIESGAACNIICTQPRRISAIS 234 (924)
T ss_pred hhhhhhHHHHHHHHHHhCccHHHHHHHHHHHHhCceEEEeCCCCCCchhhhhHHHHHHHHhcCCCCeEEecCCchHHHHH
Confidence 3455577889999999999999999999999999999999999999999999999997654443 359999999999999
Q ss_pred HHHHHHHHhCCeeeeEEeeeeeccccCCCCCceEEEechHHHHHHHhcCCCCCCCcEEEEeCCCcCCcChhHHHHHHHHH
Q 006122 111 VASRVAEEMGVKVGEEVGYTIRFEDFTNKDLTAIKFLTDGVLLREMMDDPLLTKYSVIMVDEAHERSISTDILLGLLKKI 190 (660)
Q Consensus 111 ~~~~~~~~~~~~~~~~vg~~~~~~~~~~~~~~~I~v~T~~~ll~~l~~~~~l~~~~~iIiDE~Her~~~~d~ll~~l~~~ 190 (660)
+|+|++.+++...|..|||+++.++..+. .+.+.|||+|.|++.+..++.+.+++|||+||+|||++++|+++.+++.+
T Consensus 235 vAeRVa~ER~~~~g~~VGYqvrl~~~~s~-~t~L~fcTtGvLLr~L~~~~~l~~vthiivDEVHER~i~~DflLi~lk~l 313 (924)
T KOG0920|consen 235 VAERVAKERGESLGEEVGYQVRLESKRSR-ETRLLFCTTGVLLRRLQSDPTLSGVTHIIVDEVHERSINTDFLLILLKDL 313 (924)
T ss_pred HHHHHHHHhccccCCeeeEEEeeecccCC-ceeEEEecHHHHHHHhccCcccccCceeeeeeEEEccCCcccHHHHHHHH
Confidence 99999999999999999999999999998 69999999999999999999999999999999999999999999999999
Q ss_pred HHhcCCceEEEeecccchHHHHHHhhcCCCCCCCcccccCCCCCCeEEEECCccccceEEecCCCch-------------
Q 006122 191 QRCRSDLRLIISSATIEAKSMSAFFHARKGRRGLEGVELVPRLEPAILSVEGRGFNVQIHYVEEPVS------------- 257 (660)
Q Consensus 191 ~~~~~~~kii~~SAT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~------------- 257 (660)
+..++++|+|+||||+|++.|++||++++ ++.++|++|||..+|+++...
T Consensus 314 L~~~p~LkvILMSAT~dae~fs~YF~~~p-----------------vi~i~grtfpV~~~fLEDil~~~~~~~~~~~~~~ 376 (924)
T KOG0920|consen 314 LPRNPDLKVILMSATLDAELFSDYFGGCP-----------------VITIPGRTFPVKEYFLEDILSKTGYVSEDDSARS 376 (924)
T ss_pred hhhCCCceEEEeeeecchHHHHHHhCCCc-----------------eEeecCCCcchHHHHHHHHHHHhccccccccccc
Confidence 99999999999999999999999999988 999999999999999875210
Q ss_pred ----h--------------HHHHHHHHHHHHHhcCCCCcEEEEcCCHHHHHHHHHHHHHHhhhccCCCCCeEEEEccCCC
Q 006122 258 ----D--------------YVQAAVSTVLLIHDKEPPGDILVFLTGQDDIDATIQLLTEEARTSKKNSSGLIILPLYSGL 319 (660)
Q Consensus 258 ----~--------------~~~~~~~~~~~~~~~~~~~~iLVF~~~~~~i~~l~~~L~~~~~~~~~~~~~~~v~~lh~~l 319 (660)
. ..+.+...+..++.....|.||||+||.++|..++..|....... ....+.+.++||.|
T Consensus 377 ~~~~~~~~~~~~~~~~~~id~~Li~~li~~I~~~~~~GaILVFLPG~~eI~~~~~~L~~~~~f~--~~~~~~ilplHs~~ 454 (924)
T KOG0920|consen 377 GPERSQLRLARLKLWEPEIDYDLIEDLIEYIDEREFEGAILVFLPGWEEILQLKELLEVNLPFA--DSLKFAILPLHSSI 454 (924)
T ss_pred ccccCccccccchhccccccHHHHHHHHHhcccCCCCceEEEEcCCHHHHHHHHHHhhhccccc--cccceEEEeccccC
Confidence 0 122334555667777778999999999999999999997643211 12468999999999
Q ss_pred CHHHHhhhcCCCCCCCcEEEEeCCCcccccCCCCeEEEEeCCCccceeecCCCCcccceeeecCHHhHHHhhcccCCCCC
Q 006122 320 SRAEQEQVFSPTPRGKRKVVISTNIAETSLTLEGIVYVVDSGFSKQRFYNPISDIENLVVAPISKASARQRAGRAGRVRP 399 (660)
Q Consensus 320 ~~~~r~~v~~~f~~g~~~vlvaT~i~e~Gidip~v~~VId~g~~k~~~~~~~~~~~~l~~~~~s~~~~~QR~GRaGR~~~ 399 (660)
+.++|+.||...+.|.+|||+|||+||++||||+|.||||+|+.|++.||+..++.++...|+|++++.||+|||||.++
T Consensus 455 ~s~eQ~~VF~~pp~g~RKIIlaTNIAETSITIdDVvyVIDsG~~Ke~~yD~~~~~s~l~~~wvSkAna~QR~GRAGRv~~ 534 (924)
T KOG0920|consen 455 PSEEQQAVFKRPPKGTRKIILATNIAETSITIDDVVYVIDSGLVKEKSYDPERKVSCLLLSWVSKANAKQRRGRAGRVRP 534 (924)
T ss_pred ChHHHHHhcCCCCCCcchhhhhhhhHhhcccccCeEEEEecCeeeeeeecccCCcchhheeeccccchHHhcccccCccC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cEEEEccChHHhhhhCCCCCCCccccccchhHHHHHHHcCCCCccCC--CCCCCCCHHHHHHHHHHHHHCCCCCCCCCcc
Q 006122 400 GKCYRLYTEEYFVKEIPAEGIPEMQRSNLVSCVIQLKALGIDNILGF--DWPASPPPEAMIRALEVLYSLGVLDDDAKLT 477 (660)
Q Consensus 400 G~~~~l~~~~~~~~~~~~~~~pei~~~~l~~~~l~l~~~~~~~~~~~--~~~~~p~~~~~~~al~~L~~lgald~~~~lT 477 (660)
|.||+||++..|+..+..+.+|||+|.+|.+++|++|.++..++..| ..++||+.+++..|+..|..+||++.+.++|
T Consensus 535 G~cy~L~~~~~~~~~~~~~q~PEilR~pL~~l~L~iK~l~~~~~~~fLskaldpP~~~~v~~a~~~L~~igaL~~~e~LT 614 (924)
T KOG0920|consen 535 GICYHLYTRSRYEKLMLAYQLPEILRTPLEELCLHIKVLEQGSIKAFLSKALDPPPADAVDLAIERLKQIGALDESEELT 614 (924)
T ss_pred CeeEEeechhhhhhcccccCChHHHhChHHHhhheeeeccCCCHHHHHHHhcCCCChHHHHHHHHHHHHhccccCcccch
Confidence 99999999999999555599999999999999999999988877655 5689999999999999999999999999999
Q ss_pred hHHHHHhccCCCChhhhHHHHhhcccCchhHHHHHHhhcccCcccccCcchHHHHHHHHHhhcCCC-CcHHHHHHHHHHH
Q 006122 478 SPTGFQVAEIPLEPMISKMILSSNELGCSEEIITISAVLSIQSIWVSGRGAQKELDEAKLRFAAAE-GDHVTFLNIYKGF 556 (660)
Q Consensus 478 ~~lG~~~~~lpl~p~~~~~l~~~~~~~c~~~~~~i~a~ls~~~~f~~~~~~~~~~~~~~~~~~~~~-~D~~~~l~~~~~~ 556 (660)
|||+.++.+|+||++|||++.|..|+|++++++|||+|+.++||..|.++++.+++++..|.... |||++++++|+.|
T Consensus 615 -~LG~~la~lPvd~~igK~ll~g~if~cLdp~l~iaa~Ls~k~PF~~~~~~~~~~~~~~~~~~~~~~SD~la~~~ay~~w 693 (924)
T KOG0920|consen 615 -PLGLHLASLPVDVRIGKLLLFGAIFGCLDPALTIAAALSFKSPFVSPLGKREEADKAKKLLALDSISDHLAVVRAYAGW 693 (924)
T ss_pred -HHHHHHHhCCCccccchhheehhhccccchhhhHHHHhccCCCcccCCCchhHHHHHHHHhccCCcchHHHHHHHHHHH
Confidence 89999999999999999999999999999999999999999999999999999999999988665 9999999999999
Q ss_pred HhcCc-----chhHHhhccCCHHHHHHHHHHHHHHHHHHHHcCCcccC------------CCCChHHHHHHHHHhhhhhh
Q 006122 557 LQSCK-----SSHWCHKNFINYHAMKKVIEIREQLRRIAQRIGIVMKS------------CESDMQVSLLTLLLVCLERI 619 (660)
Q Consensus 557 ~~~~~-----~~~wc~~~~l~~~~l~~~~~ir~ql~~~l~~~~l~~~~------------~~~~~~~i~~al~~g~~~~i 619 (660)
.+..+ ..+||++|||+..+|+++..+|.|+.+.+.++|+...+ ...+++.++.+|++|++|++
T Consensus 694 ~~~~~~~~~~~~~fc~~~fLs~~~l~~i~~l~~q~~~~l~~~g~~~~~~~~~~~~~~~n~~s~~~~~iravl~a~lyP~i 773 (924)
T KOG0920|consen 694 REILRSGPSAEKDFCEENFLSSNTLQEISSLRVQFLELLSDIGLIPISSTAALTDSECNHNSQNPELVRAVLCAGLYPNI 773 (924)
T ss_pred HHHHhccchHHHHHHHHhhccHHHHHHHHHHHHHHHHHhhhcccccCCcccccCchhhhhcCCCHHHHHHHHhccCCCce
Confidence 87533 57899999999999999999999999999999887643 23357789999999999999
Q ss_pred hccCC---CCCcccccccCCCCcEEEccCCC
Q 006122 620 STLYD---FPKLMGTCMPSAGCSFVYHVTCS 647 (660)
Q Consensus 620 a~~~~---~~~~~~~~~~~~~~~~~~hp~~~ 647 (660)
++... ..+-... ...+.-.+++||+|+
T Consensus 774 ~~~~~~~~~~~~~~~-~~~~~~~v~i~~~sv 803 (924)
T KOG0920|consen 774 AFVRRMEPKSKSVTF-VTKADGRVIIHPSSV 803 (924)
T ss_pred eeeecccCCcCccee-ecCCceeEEEecchh
Confidence 98764 2221111 112234789999998
No 10
>TIGR01970 DEAH_box_HrpB ATP-dependent helicase HrpB. This model represents HrpB, one of two related but uncharacterized DEAH-box ATP-dependent helicases in many Proteobacteria, but also in a few species of other lineages. The member from Rhizobium meliloti has been designated HelO. HrpB is typically about 800 residues in length, while its paralog HrpA (TIGR01967), also uncharacterized, is about 1300 amino acids long. Related characterized eukarotic proteins are RNA helicases associated with pre-mRNA processing.
Probab=100.00 E-value=6.8e-85 Score=736.96 Aligned_cols=530 Identities=33% Similarity=0.503 Sum_probs=455.3
Q ss_pred CCcHHHHHHHHHHHhcCCEEEEEcCCCCcHHHHHHHHHHhccccCCCeEEEEeCchHHHHHHHHHHHHHHhCCeeeeEEe
Q 006122 49 LPVYKYRTAILYLVETHATTIIVGETGSGKTTQIPQYLKEAGWADGGRVIACTQPRRLAVQAVASRVAEEMGVKVGEEVG 128 (660)
Q Consensus 49 lPi~~~~~~i~~~l~~~~~vii~apTGsGKT~~ip~~l~~~~~~~~~~~i~v~p~r~la~~~~~~~~~~~~~~~~~~~vg 128 (660)
|||+.++++|++++.+++++|++|+|||||||++|+++++... .+ ..|+|++||++++.+++++++++++..+|..+|
T Consensus 1 LPi~~~~~~i~~~l~~~~~vIi~a~TGSGKTT~vpl~lL~~~~-~~-~~ilvlqPrR~aA~qiA~rva~~~~~~~g~~VG 78 (819)
T TIGR01970 1 LPIHAVLPALRDALAAHPQVVLEAPPGAGKSTAVPLALLDAPG-IG-GKIIMLEPRRLAARSAAQRLASQLGEAVGQTVG 78 (819)
T ss_pred CCchHHHHHHHHHHHcCCcEEEECCCCCCHHHHHHHHHHHhhc-cC-CeEEEEeCcHHHHHHHHHHHHHHhCCCcCcEEE
Confidence 7999999999999999999999999999999999999987753 22 358889999999999999999999999999999
Q ss_pred eeeeccccCCCCCceEEEechHHHHHHHhcCCCCCCCcEEEEeCCCcCCcChhHHHHHHHHHHH-hcCCceEEEeecccc
Q 006122 129 YTIRFEDFTNKDLTAIKFLTDGVLLREMMDDPLLTKYSVIMVDEAHERSISTDILLGLLKKIQR-CRSDLRLIISSATIE 207 (660)
Q Consensus 129 ~~~~~~~~~~~~~~~I~v~T~~~ll~~l~~~~~l~~~~~iIiDE~Her~~~~d~ll~~l~~~~~-~~~~~kii~~SAT~~ 207 (660)
|.++++...+. +++|+|+|+|+|++.+.+++.+.++++|||||+|||++++|+.+++++.+.. .++++|+|+||||++
T Consensus 79 y~vr~~~~~s~-~t~I~v~T~G~Llr~l~~d~~L~~v~~VIiDEaHER~L~~Dl~L~ll~~i~~~lr~dlqlIlmSATl~ 157 (819)
T TIGR01970 79 YRVRGENKVSR-RTRLEVVTEGILTRMIQDDPELDGVGALIFDEFHERSLDADLGLALALDVQSSLREDLKILAMSATLD 157 (819)
T ss_pred EEEccccccCC-CCcEEEECCcHHHHHHhhCcccccCCEEEEeccchhhhccchHHHHHHHHHHhcCCCceEEEEeCCCC
Confidence 99999988776 7999999999999999988899999999999999999999999998887765 578999999999999
Q ss_pred hHHHHHHhhcCCCCCCCcccccCCCCCCeEEEECCccccceEEecCCCchhHHHHHHH-HHHHHHhcCCCCcEEEEcCCH
Q 006122 208 AKSMSAFFHARKGRRGLEGVELVPRLEPAILSVEGRGFNVQIHYVEEPVSDYVQAAVS-TVLLIHDKEPPGDILVFLTGQ 286 (660)
Q Consensus 208 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~iLVF~~~~ 286 (660)
.+.+.+||++.+ ++.++|+.||++++|......++....+. .+..+. ....|++|||+||+
T Consensus 158 ~~~l~~~l~~~~-----------------vI~~~gr~~pVe~~y~~~~~~~~~~~~v~~~l~~~l-~~~~g~iLVFlpg~ 219 (819)
T TIGR01970 158 GERLSSLLPDAP-----------------VVESEGRSFPVEIRYLPLRGDQRLEDAVSRAVEHAL-ASETGSILVFLPGQ 219 (819)
T ss_pred HHHHHHHcCCCc-----------------EEEecCcceeeeeEEeecchhhhHHHHHHHHHHHHH-HhcCCcEEEEECCH
Confidence 999999998766 88899999999999987765555443332 333333 33568999999999
Q ss_pred HHHHHHHHHHHHHhhhccCCCCCeEEEEccCCCCHHHHhhhcCCCCCCCcEEEEeCCCcccccCCCCeEEEEeCCCccce
Q 006122 287 DDIDATIQLLTEEARTSKKNSSGLIILPLYSGLSRAEQEQVFSPTPRGKRKVVISTNIAETSLTLEGIVYVVDSGFSKQR 366 (660)
Q Consensus 287 ~~i~~l~~~L~~~~~~~~~~~~~~~v~~lh~~l~~~~r~~v~~~f~~g~~~vlvaT~i~e~Gidip~v~~VId~g~~k~~ 366 (660)
++++.+++.|.+... .++.+.++||+|++++|.++++.|++|+++||||||++|+|||||+|++|||+|+.|.+
T Consensus 220 ~eI~~l~~~L~~~~~------~~~~v~pLHg~L~~~eq~~~~~~~~~G~rkVlVATnIAErgItIp~V~~VID~Gl~r~~ 293 (819)
T TIGR01970 220 AEIRRVQEQLAERLD------SDVLICPLYGELSLAAQDRAIKPDPQGRRKVVLATNIAETSLTIEGIRVVIDSGLARVA 293 (819)
T ss_pred HHHHHHHHHHHhhcC------CCcEEEEecCCCCHHHHHHHHhhcccCCeEEEEecchHhhcccccCceEEEEcCccccc
Confidence 999999999987431 37899999999999999999999999999999999999999999999999999999999
Q ss_pred eecCCCCcccceeeecCHHhHHHhhcccCCCCCcEEEEccChHHhhhhCCCCCCCccccccchhHHHHHHHcCCCCccCC
Q 006122 367 FYNPISDIENLVVAPISKASARQRAGRAGRVRPGKCYRLYTEEYFVKEIPAEGIPEMQRSNLVSCVIQLKALGIDNILGF 446 (660)
Q Consensus 367 ~~~~~~~~~~l~~~~~s~~~~~QR~GRaGR~~~G~~~~l~~~~~~~~~~~~~~~pei~~~~l~~~~l~l~~~~~~~~~~~ 446 (660)
.||+.++++.+.+.|+|+++|.||+|||||.++|.||+||+++++.. +.++..|||++.+|.+++|+++.+|+.++..|
T Consensus 294 ~yd~~~g~~~L~~~~iSkasa~QR~GRAGR~~~G~cyrL~t~~~~~~-l~~~~~PEI~r~~L~~~~L~l~~~g~~~~~~~ 372 (819)
T TIGR01970 294 RFDPKTGITRLETVRISQASATQRAGRAGRLEPGVCYRLWSEEQHQR-LPAQDEPEILQADLSGLALELAQWGAKDPSDL 372 (819)
T ss_pred ccccccCCceeeEEEECHHHHHhhhhhcCCCCCCEEEEeCCHHHHHh-hhcCCCcceeccCcHHHHHHHHHcCCCChhhC
Confidence 99999999999999999999999999999999999999999999987 99999999999999999999999999999999
Q ss_pred CCCCCCCHHHHHHHHHHHHHCCCCCCCCCcchHHHHHhccCCCChhhhHHHHhhcccCchhHHHHHHhhcccCcccccCc
Q 006122 447 DWPASPPPEAMIRALEVLYSLGVLDDDAKLTSPTGFQVAEIPLEPMISKMILSSNELGCSEEIITISAVLSIQSIWVSGR 526 (660)
Q Consensus 447 ~~~~~p~~~~~~~al~~L~~lgald~~~~lT~~lG~~~~~lpl~p~~~~~l~~~~~~~c~~~~~~i~a~ls~~~~f~~~~ 526 (660)
+|+++|+.+++..|++.|..+||||++|+|| ++|+.|++||++|++|+||+.|..++|.+++++|+|+|++++++-.
T Consensus 373 ~~l~~P~~~~i~~a~~~L~~lgald~~~~lT-~~G~~~~~lp~~p~l~~~ll~~~~~~~~~~~~~iaa~ls~~~~~~~-- 449 (819)
T TIGR01970 373 RWLDAPPSVALAAARQLLQRLGALDAQGRLT-AHGKAMAALGCHPRLAAMLLSAHSTGLAALACDLAALLEERGLPRQ-- 449 (819)
T ss_pred CCCCCcCHHHHHHHHHHHHHCCCCCCCCCcC-HHHHHHHhcCCCHHHHHHHHHhhhcCCHHHHHHHHHHHcCCCCCCC--
Confidence 9999999999999999999999999999999 7999999999999999999999999999999999999999976421
Q ss_pred chHHHHHHHHHhhcCCCCcHHHHHHHHHHHHhcCcchhHHhhccCCHHHHHHHHHHHHHHHHHHHHcCCc-cc-CCCCCh
Q 006122 527 GAQKELDEAKLRFAAAEGDHVTFLNIYKGFLQSCKSSHWCHKNFINYHAMKKVIEIREQLRRIAQRIGIV-MK-SCESDM 604 (660)
Q Consensus 527 ~~~~~~~~~~~~~~~~~~D~~~~l~~~~~~~~~~~~~~wc~~~~l~~~~l~~~~~ir~ql~~~l~~~~l~-~~-~~~~~~ 604 (660)
..+|....+..+... . ... ...+.++.+|+.+.+ +.. .. ....+.
T Consensus 450 ---------------~~~d~~~~~~~~~~~---~--~~~----------~~~~~~~~~~~~~~~---~~~~~~~~~~~~~ 496 (819)
T TIGR01970 450 ---------------GGADLMNRLHRLQQG---R--QGR----------GQRAQQLAKKLRRRL---RFSQADSGAIASH 496 (819)
T ss_pred ---------------CcccHHHHHHHHhhc---c--hhh----------HHHHHHHHHHHHHHh---CcCcCCCcccccc
Confidence 135766655555421 0 111 112344555554432 221 10 111111
Q ss_pred HHHHHHHHHhhhhhhhccCCC-CCcccccccCCCCcEEEccCCC
Q 006122 605 QVSLLTLLLVCLERISTLYDF-PKLMGTCMPSAGCSFVYHVTCS 647 (660)
Q Consensus 605 ~~i~~al~~g~~~~ia~~~~~-~~~~~~~~~~~~~~~~~hp~~~ 647 (660)
.+-.+++.+|++|||+.++. ..|+.. .|..+.++|++.
T Consensus 497 -~~g~lla~a~pdria~~r~~~~~y~l~----~G~~~~l~~~~~ 535 (819)
T TIGR01970 497 -ALGLLLALAFPDRIAKRRGQPGRYQLA----NGRGAVLSAEDA 535 (819)
T ss_pred -hHhHHHhhhChHhheeccCCCCeEECC----CCCeeEeCCCCc
Confidence 26678899999999997743 235554 788999999887
No 11
>PRK11664 ATP-dependent RNA helicase HrpB; Provisional
Probab=100.00 E-value=2.9e-83 Score=725.86 Aligned_cols=527 Identities=32% Similarity=0.516 Sum_probs=450.9
Q ss_pred CCCcHHHHHHHHHHHhcCCEEEEEcCCCCcHHHHHHHHHHhccccCCCeEEEEeCchHHHHHHHHHHHHHHhCCeeeeEE
Q 006122 48 RLPVYKYRTAILYLVETHATTIIVGETGSGKTTQIPQYLKEAGWADGGRVIACTQPRRLAVQAVASRVAEEMGVKVGEEV 127 (660)
Q Consensus 48 ~lPi~~~~~~i~~~l~~~~~vii~apTGsGKT~~ip~~l~~~~~~~~~~~i~v~p~r~la~~~~~~~~~~~~~~~~~~~v 127 (660)
.||++...++|++++.+++++|++|||||||||++|+++++..... + .|+|++||++++.+++++++++++..+|..+
T Consensus 3 ~LPi~~~~~~i~~~l~~~~~vvv~A~TGSGKTt~~pl~lL~~~~~~-~-~ilvlqPrR~aA~qia~rva~~l~~~~g~~V 80 (812)
T PRK11664 3 SLPVAAVLPELLTALKTAPQVLLKAPTGAGKSTWLPLQLLQHGGIN-G-KIIMLEPRRLAARNVAQRLAEQLGEKPGETV 80 (812)
T ss_pred CCCHHHHHHHHHHHHHhCCCEEEEcCCCCCHHHHHHHHHHHcCCcC-C-eEEEECChHHHHHHHHHHHHHHhCcccCceE
Confidence 5999999999999999999999999999999999999998865432 3 4788999999999999999999999999999
Q ss_pred eeeeeccccCCCCCceEEEechHHHHHHHhcCCCCCCCcEEEEeCCCcCCcChhHHHHHHHHHHH-hcCCceEEEeeccc
Q 006122 128 GYTIRFEDFTNKDLTAIKFLTDGVLLREMMDDPLLTKYSVIMVDEAHERSISTDILLGLLKKIQR-CRSDLRLIISSATI 206 (660)
Q Consensus 128 g~~~~~~~~~~~~~~~I~v~T~~~ll~~l~~~~~l~~~~~iIiDE~Her~~~~d~ll~~l~~~~~-~~~~~kii~~SAT~ 206 (660)
||.++++...+. .++|+|+|+|+|++.+..++.+.++++|||||+|||++++|+.+++++.+.+ .++++|+|+||||+
T Consensus 81 Gy~vr~~~~~~~-~t~I~v~T~G~Llr~l~~d~~L~~v~~IIlDEaHER~l~~Dl~L~ll~~i~~~lr~~lqlilmSATl 159 (812)
T PRK11664 81 GYRMRAESKVGP-NTRLEVVTEGILTRMIQRDPELSGVGLVILDEFHERSLQADLALALLLDVQQGLRDDLKLLIMSATL 159 (812)
T ss_pred EEEecCccccCC-CCcEEEEChhHHHHHHhhCCCcCcCcEEEEcCCCccccccchHHHHHHHHHHhCCccceEEEEecCC
Confidence 999999988777 7899999999999999988899999999999999999999999998887765 57899999999999
Q ss_pred chHHHHHHhhcCCCCCCCcccccCCCCCCeEEEECCccccceEEecCCCchhHHHHHHHHHHHHHhcCCCCcEEEEcCCH
Q 006122 207 EAKSMSAFFHARKGRRGLEGVELVPRLEPAILSVEGRGFNVQIHYVEEPVSDYVQAAVSTVLLIHDKEPPGDILVFLTGQ 286 (660)
Q Consensus 207 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iLVF~~~~ 286 (660)
+.+.+++||.+.+ ++.++|+.||++.+|...+..+++...+..++........|++|||+||+
T Consensus 160 ~~~~l~~~~~~~~-----------------~I~~~gr~~pV~~~y~~~~~~~~~~~~v~~~l~~~l~~~~g~iLVFlpg~ 222 (812)
T PRK11664 160 DNDRLQQLLPDAP-----------------VIVSEGRSFPVERRYQPLPAHQRFDEAVARATAELLRQESGSLLLFLPGV 222 (812)
T ss_pred CHHHHHHhcCCCC-----------------EEEecCccccceEEeccCchhhhHHHHHHHHHHHHHHhCCCCEEEEcCCH
Confidence 9999999997665 78899999999999988776666654443333333334578999999999
Q ss_pred HHHHHHHHHHHHHhhhccCCCCCeEEEEccCCCCHHHHhhhcCCCCCCCcEEEEeCCCcccccCCCCeEEEEeCCCccce
Q 006122 287 DDIDATIQLLTEEARTSKKNSSGLIILPLYSGLSRAEQEQVFSPTPRGKRKVVISTNIAETSLTLEGIVYVVDSGFSKQR 366 (660)
Q Consensus 287 ~~i~~l~~~L~~~~~~~~~~~~~~~v~~lh~~l~~~~r~~v~~~f~~g~~~vlvaT~i~e~Gidip~v~~VId~g~~k~~ 366 (660)
++++.+++.|.+... .++.+.++||+|+.++|.++++.|++|+++||||||++|+|||||+|++|||+|+.|..
T Consensus 223 ~ei~~l~~~L~~~~~------~~~~v~~Lhg~l~~~eq~~~~~~~~~G~rkVlvATnIAErsLtIp~V~~VID~Gl~r~~ 296 (812)
T PRK11664 223 GEIQRVQEQLASRVA------SDVLLCPLYGALSLAEQQKAILPAPAGRRKVVLATNIAETSLTIEGIRLVVDSGLERVA 296 (812)
T ss_pred HHHHHHHHHHHHhcc------CCceEEEeeCCCCHHHHHHHhccccCCCeEEEEecchHHhcccccCceEEEECCCcccc
Confidence 999999999986421 26889999999999999999999999999999999999999999999999999999999
Q ss_pred eecCCCCcccceeeecCHHhHHHhhcccCCCCCcEEEEccChHHhhhhCCCCCCCccccccchhHHHHHHHcCCCCccCC
Q 006122 367 FYNPISDIENLVVAPISKASARQRAGRAGRVRPGKCYRLYTEEYFVKEIPAEGIPEMQRSNLVSCVIQLKALGIDNILGF 446 (660)
Q Consensus 367 ~~~~~~~~~~l~~~~~s~~~~~QR~GRaGR~~~G~~~~l~~~~~~~~~~~~~~~pei~~~~l~~~~l~l~~~~~~~~~~~ 446 (660)
.||+..|++.+.+.|+|+++|.||+|||||.++|.||+||+++.+.. ++++..|||++++|.+++|.++++|+.++..|
T Consensus 297 ~yd~~~g~~~L~~~~iSkasa~QR~GRaGR~~~G~cyrL~t~~~~~~-l~~~~~PEI~r~dL~~~~L~l~~~g~~~~~~~ 375 (812)
T PRK11664 297 RFDPKTGLTRLVTQRISQASMTQRAGRAGRLEPGICLHLYSKEQAER-AAAQSEPEILHSDLSGLLLELLQWGCHDPAQL 375 (812)
T ss_pred cccccCCcceeEEEeechhhhhhhccccCCCCCcEEEEecCHHHHhh-CccCCCCceeccchHHHHHHHHHcCCCCHHhC
Confidence 99999999999999999999999999999999999999999999988 99999999999999999999999999999999
Q ss_pred CCCCCCCHHHHHHHHHHHHHCCCCCCCCCcchHHHHHhccCCCChhhhHHHHhhcccCchh--HHHHHHhhcccCccccc
Q 006122 447 DWPASPPPEAMIRALEVLYSLGVLDDDAKLTSPTGFQVAEIPLEPMISKMILSSNELGCSE--EIITISAVLSIQSIWVS 524 (660)
Q Consensus 447 ~~~~~p~~~~~~~al~~L~~lgald~~~~lT~~lG~~~~~lpl~p~~~~~l~~~~~~~c~~--~~~~i~a~ls~~~~f~~ 524 (660)
+|+|||+.+++++|++.|..+||||++|+|| ++|+.|++||++|++|+||+.|..++|.. .+..++|+|+..+.
T Consensus 376 ~~ld~P~~~~~~~A~~~L~~lgald~~g~lT-~~G~~m~~lp~~Prla~~ll~a~~~~~~~l~~a~~laall~e~~~--- 451 (812)
T PRK11664 376 SWLDQPPAAALAAAKRLLQQLGALDGQGRLT-ARGRKMAALGNDPRLAAMLVAAKEDDEAALATAAKLAAILEEPPR--- 451 (812)
T ss_pred CCCCCCCHHHHHHHHHHHHHCCCCCCCCCcC-HHHHHHHhcCCchHHHHHHHHHHhcCchhhHHHHHHHHhhccCCC---
Confidence 9999999999999999999999999999999 79999999999999999999999998653 67777777776521
Q ss_pred CcchHHHHHHHHHhhcCCCCcHHHHHHHHHHHHhcCcchhHHhhccCCHHHHHHHHHHHHHHHHHHHHcCCcccCCCCCh
Q 006122 525 GRGAQKELDEAKLRFAAAEGDHVTFLNIYKGFLQSCKSSHWCHKNFINYHAMKKVIEIREQLRRIAQRIGIVMKSCESDM 604 (660)
Q Consensus 525 ~~~~~~~~~~~~~~~~~~~~D~~~~l~~~~~~~~~~~~~~wc~~~~l~~~~l~~~~~ir~ql~~~l~~~~l~~~~~~~~~ 604 (660)
+ ..+|....+..+. ..|+ ..+.++.+|+.+.. + ..+.
T Consensus 452 --~--------------~~~d~~~~l~~~~--------~~~~----------~~~~~~~~~~~~~~---~------~~~~ 488 (812)
T PRK11664 452 --S--------------GSSDLGVALSRKQ--------PHWQ----------QRAQQLLKRLNVRG---G------EADS 488 (812)
T ss_pred --C--------------CcccHHHHHHHHH--------HHHH----------HHHHHHHHHHHhhc---c------cCCh
Confidence 0 0234332222221 1342 23445555553321 1 1134
Q ss_pred HHHHHHHHHhhhhhhhccCCCCCcccccccCCCCcEEEccCCC-----CcEE
Q 006122 605 QVSLLTLLLVCLERISTLYDFPKLMGTCMPSAGCSFVYHVTCS-----PVLC 651 (660)
Q Consensus 605 ~~i~~al~~g~~~~ia~~~~~~~~~~~~~~~~~~~~~~hp~~~-----~~~~ 651 (660)
+.+.++|+.||++|||+.++... .+.-+.|..+.+||++. |+++
T Consensus 489 ~~~~~~la~aypdriA~~r~~~~---~~~l~~G~~a~l~~~~~l~~~~~lv~ 537 (812)
T PRK11664 489 SLIAPLLALAFPDRIARRRGQDG---RYQLANGMGAMLDADDALSRHEWLIA 537 (812)
T ss_pred HHHHHHHHHHCHHHHhhhcCCCC---eEEeeCCCeEEECCCCcccCCCeEEE
Confidence 45899999999999999764432 22334799999999988 6665
No 12
>KOG0921 consensus Dosage compensation complex, subunit MLE [Transcription]
Probab=100.00 E-value=5.7e-60 Score=501.07 Aligned_cols=573 Identities=32% Similarity=0.493 Sum_probs=482.6
Q ss_pred ccchHhHHHHhcCCCcHHHHHHHHHHHhcCCEEEEEcCCCCcHHHHHHHHHHhccccCCC---eEEEEeCchHHHHHHHH
Q 006122 36 GYGYASIEKQRQRLPVYKYRTAILYLVETHATTIIVGETGSGKTTQIPQYLKEAGWADGG---RVIACTQPRRLAVQAVA 112 (660)
Q Consensus 36 ~~~~~~~~~~~~~lPi~~~~~~i~~~l~~~~~vii~apTGsGKT~~ip~~l~~~~~~~~~---~~i~v~p~r~la~~~~~ 112 (660)
.+.+..+.++|..||+...+++|++++..+++++|.+.||+|||+++.+++++.....+. ..+++++||++.+++++
T Consensus 364 d~e~~~~~a~re~lpva~~~~~i~q~v~dn~v~~I~getgcgk~tq~aq~iLe~~~~ns~g~~~na~v~qprrisaisia 443 (1282)
T KOG0921|consen 364 DEALDKITAQREELPVAQYRSEILQAVAENRVVIIKGETGCGKSTQVAQFLLESFLENSNGASFNAVVSQPRRISAISLA 443 (1282)
T ss_pred ccchhhhhhhhhhCcHHHHHHHHHHHHhcCceeeEeecccccchhHHHHHHHHHHhhccccccccceeccccccchHHHH
Confidence 345677888999999999999999999999999999999999999999999998655442 23889999999999999
Q ss_pred HHHHHHhCCeeeeEEeeeeeccccCCCCCceEEEechHHHHHHHhcCCCCCCCcEEEEeCCCcCCcChhHHHHHHHHHHH
Q 006122 113 SRVAEEMGVKVGEEVGYTIRFEDFTNKDLTAIKFLTDGVLLREMMDDPLLTKYSVIMVDEAHERSISTDILLGLLKKIQR 192 (660)
Q Consensus 113 ~~~~~~~~~~~~~~vg~~~~~~~~~~~~~~~I~v~T~~~ll~~l~~~~~l~~~~~iIiDE~Her~~~~d~ll~~l~~~~~ 192 (660)
++++++.+..+|..+||++|+++........|.++|-|.+++.+.+. +..++++|+||.|||..++||++.+++.+..
T Consensus 444 erva~er~e~~g~tvgy~vRf~Sa~prpyg~i~fctvgvllr~~e~g--lrg~sh~i~deiherdv~~dfll~~lr~m~~ 521 (1282)
T KOG0921|consen 444 ERVANERGEEVGETCGYNVRFDSATPRPYGSIMFCTVGVLLRMMENG--LRGISHVIIDEIHERDVDTDFVLIVLREMIS 521 (1282)
T ss_pred HHHHHhhHHhhcccccccccccccccccccceeeeccchhhhhhhhc--ccccccccchhhhhhccchHHHHHHHHhhhc
Confidence 99999999999999999999999888667899999999999987653 6788999999999999999999999999999
Q ss_pred hcCCceEEEeecccchHHHHHHhhcCCCCCCCcccccCCCCCCeEEEECCccccceEEecCC------------------
Q 006122 193 CRSDLRLIISSATIEAKSMSAFFHARKGRRGLEGVELVPRLEPAILSVEGRGFNVQIHYVEE------------------ 254 (660)
Q Consensus 193 ~~~~~kii~~SAT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~------------------ 254 (660)
..+++++++||||+|.+.|..||...+ .+.+.++++|+..+|+++
T Consensus 522 ty~dl~v~lmsatIdTd~f~~~f~~~p-----------------~~~~~grt~pvq~F~led~~~~~~~vp~~~~~~k~k 584 (1282)
T KOG0921|consen 522 TYRDLRVVLMSATIDTDLFTNFFSSIP-----------------DVTVHGRTFPVQSFFLEDIIQMTQFVPSEPSQKKRK 584 (1282)
T ss_pred cchhhhhhhhhcccchhhhhhhhcccc-----------------ceeeccccccHHHHHHHHhhhhhhccCCCcCccchh
Confidence 999999999999999999999999887 455666666655554432
Q ss_pred ----Cch---h-------------H----------------HHHHHHHH-HHHHhcCCCCcEEEEcCCHHHHHHHHHHHH
Q 006122 255 ----PVS---D-------------Y----------------VQAAVSTV-LLIHDKEPPGDILVFLTGQDDIDATIQLLT 297 (660)
Q Consensus 255 ----~~~---~-------------~----------------~~~~~~~~-~~~~~~~~~~~iLVF~~~~~~i~~l~~~L~ 297 (660)
... + + ...+.+.+ .++....-.|.|+||+|+...+..++..+.
T Consensus 585 ~~~~~~~~~~ddK~~n~n~~~dd~~~~~~~~am~~~se~d~~f~l~Eal~~~i~s~~i~gailvflpgwa~i~~L~~~ll 664 (1282)
T KOG0921|consen 585 KDDDEEDEEVDDKGRNMNILCDPSYNESTRTAMSRLSEKDIPFGLIEALLNDIASRNIDGAVLVFLPGWAEIMTLCNRLL 664 (1282)
T ss_pred hcccccCchhhhcccccccccChhhcchhhhhhhcchhhcchhHHHHHHHhhhcccCCccceeeecCchHHhhhhhhhhh
Confidence 100 0 0 01112222 233344457889999999999999999887
Q ss_pred HHhhhccCCCCCeEEEEccCCCCHHHHhhhcCCCCCCCcEEEEeCCCcccccCCCCeEEEEeCCCccceeecCCCCcccc
Q 006122 298 EEARTSKKNSSGLIILPLYSGLSRAEQEQVFSPTPRGKRKVVISTNIAETSLTLEGIVYVVDSGFSKQRFYNPISDIENL 377 (660)
Q Consensus 298 ~~~~~~~~~~~~~~v~~lh~~l~~~~r~~v~~~f~~g~~~vlvaT~i~e~Gidip~v~~VId~g~~k~~~~~~~~~~~~l 377 (660)
..- ...+...+.+++.|+.+...++.++++..+.|..|+|++|++++++++|.++.+|||.+..+.+.|-....+..+
T Consensus 665 ~~~--~fg~~~~y~ilp~Hsq~~~~eqrkvf~~~p~gv~kii~stniaetsiTidd~v~vid~cka~~~~~~s~nn~~~~ 742 (1282)
T KOG0921|consen 665 EHQ--EFGQANKYEILPLHSQLTSQEQRKVFEPVPEGVTKIILSTNIAETSITIDDVVYVIDSCKAKEKLFTSHNNMTHY 742 (1282)
T ss_pred hhh--hhccchhcccccchhhcccHhhhhccCcccccccccccccceeeEeeeecceeEEEeeeeeeeeeeccccceeee
Confidence 652 223344788999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred eeeecCHHhHHHhhcccCCCCCcEEEEccChHHhhhhCCCCCCCccccccchhHHHHHHHcCCCCccCC--CCCCCCCHH
Q 006122 378 VVAPISKASARQRAGRAGRVRPGKCYRLYTEEYFVKEIPAEGIPEMQRSNLVSCVIQLKALGIDNILGF--DWPASPPPE 455 (660)
Q Consensus 378 ~~~~~s~~~~~QR~GRaGR~~~G~~~~l~~~~~~~~~~~~~~~pei~~~~l~~~~l~l~~~~~~~~~~~--~~~~~p~~~ 455 (660)
.+.|.|+-+..||.||+||.++|.|+++.+...|+. +.++..||+.+.++.++.|.+|.+....+..| .-+.||+..
T Consensus 743 Atvw~sktn~eqr~gr~grvR~G~~f~lcs~arF~~-l~~~~t~em~r~plhemalTikll~l~SI~~fl~kal~~~p~d 821 (1282)
T KOG0921|consen 743 ATVWASKTNLEQRKGRAGRVRPGFCFHLCSRARFEA-LEDHGTAEMFRTPLHEIALTIKLLRLGSIGEFLGKALQPPPYD 821 (1282)
T ss_pred eeecccccchHhhcccCceecccccccccHHHHHHH-HHhcCcHhhhcCccHHHHhhHHHHHhhhHHHHHhhccCCCchh
Confidence 999999999999999999999999999999999998 99999999999999999999988876555554 458999999
Q ss_pred HHHHHHHHHHHCCCCCCCCCcchHHHHHhccCCCChhhhHHHHhhcccCchhHHHHHHhhcccCcccccCcchHHHHHHH
Q 006122 456 AMIRALEVLYSLGVLDDDAKLTSPTGFQVAEIPLEPMISKMILSSNELGCSEEIITISAVLSIQSIWVSGRGAQKELDEA 535 (660)
Q Consensus 456 ~~~~al~~L~~lgald~~~~lT~~lG~~~~~lpl~p~~~~~l~~~~~~~c~~~~~~i~a~ls~~~~f~~~~~~~~~~~~~ 535 (660)
++..+-..|..++++|.++.+| |+|+.++.+|++|.++|+++.+.-++|..-++.+|+.++...+|..-.........-
T Consensus 822 av~e~e~~l~~m~~ld~n~elt-~lg~~la~l~iep~~~k~~~lg~~~g~~~~m~~~as~~s~~~~~~~~~~~~~rl~g~ 900 (1282)
T KOG0921|consen 822 AVIEAEAVLREMGALDANDELT-PLGRMLARLPIEPRIGKMMILGTALGAGSVMCDVASAMSFPTPFVPREKHHSRLSGT 900 (1282)
T ss_pred hccCchHHHHHhhhhhccCccc-chhhhhhhccCcccccceeeechhhccchhhhhhhcccccccccccccccccccccc
Confidence 9999999999999999999999 899999999999999999999999999999999999999987766533333333333
Q ss_pred HHhhcCCC------CcHHHHHHHHHHHHhcCcchhHHhhccCCHHHHHHHHHHHHHHHHHHHHcCCccc----------C
Q 006122 536 KLRFAAAE------GDHVTFLNIYKGFLQSCKSSHWCHKNFINYHAMKKVIEIREQLRRIAQRIGIVMK----------S 599 (660)
Q Consensus 536 ~~~~~~~~------~D~~~~l~~~~~~~~~~~~~~wc~~~~l~~~~l~~~~~ir~ql~~~l~~~~l~~~----------~ 599 (660)
+++|++.. +||.+.+..++.|..+--.++||.+++++.+.|+.....+.|+...|+..+++.. .
T Consensus 901 q~~~~g~kfsdhva~~~v~q~~r~~~q~ga~~e~efc~r~~l~~~~~~~t~~a~~ql~d~L~q~~fpe~~~~~~~v~~ng 980 (1282)
T KOG0921|consen 901 QRKFAGNKFSDHVAIVSVIQGYREAVQMGAAAEREFCERYSLSNPVLKMTDGARRQLIDVLRQCSFPEDILFDISVNVNG 980 (1282)
T ss_pred hhhccccccccchhhhhhhhhhHHHhhhhhhhhhhHhHhhhhcchhhhhhhhhHHHHHHHHHhccCccccccceeeccCC
Confidence 34444332 5666666666666655447899999999999999999999999999997766552 1
Q ss_pred CCCChHHHHHHHHHhhhhhhhccCCCCCcccc
Q 006122 600 CESDMQVSLLTLLLVCLERISTLYDFPKLMGT 631 (660)
Q Consensus 600 ~~~~~~~i~~al~~g~~~~ia~~~~~~~~~~~ 631 (660)
.+++.+.++-.|+.+++++++.+..+.+.+..
T Consensus 981 ~d~~l~~~~~lL~~~lypn~~~y~ekrkvLtT 1012 (1282)
T KOG0921|consen 981 PDRELNLMRSLLVMALYPNVAYYVEKRKVLTT 1012 (1282)
T ss_pred CCchhHHHHHHHHhhcCCccceeccceeEEee
Confidence 22234566777888999999988766665554
No 13
>PHA02653 RNA helicase NPH-II; Provisional
Probab=100.00 E-value=3.9e-55 Score=483.80 Aligned_cols=395 Identities=19% Similarity=0.250 Sum_probs=300.1
Q ss_pred HHHHHHHHHhcCCEEEEEcCCCCcHHHHHHHHHHhc-----ccc--------CCCeEEEEeCchHHHHHHHHHHHHHHhC
Q 006122 54 YRTAILYLVETHATTIIVGETGSGKTTQIPQYLKEA-----GWA--------DGGRVIACTQPRRLAVQAVASRVAEEMG 120 (660)
Q Consensus 54 ~~~~i~~~l~~~~~vii~apTGsGKT~~ip~~l~~~-----~~~--------~~~~~i~v~p~r~la~~~~~~~~~~~~~ 120 (660)
.|+++++.+.+++++|++|+||||||+++||++++. ++. ...+.++|++||+.++.+++.++.+..|
T Consensus 168 iQ~qil~~i~~gkdvIv~A~TGSGKTtqvPq~l~~~~flf~~l~~l~~~~~~~~~~~ilvt~PrreLa~qi~~~i~~~vg 247 (675)
T PHA02653 168 VQLKIFEAWISRKPVVLTGGTGVGKTSQVPKLLLWFNYLFGGFDNLDKIDPNFIERPIVLSLPRVALVRLHSITLLKSLG 247 (675)
T ss_pred HHHHHHHHHHhCCCEEEECCCCCCchhHHHHHHHHhhhccchhhhhhhcccccCCcEEEEECcHHHHHHHHHHHHHHHhC
Confidence 466889999999999999999999999999998763 111 1223466677777777778888777655
Q ss_pred Ce------eeeEEeeeeeccccCCCCCceEEEechHHHHHHHhcCCCCCCCcEEEEeCCCcCCcChhHHHHHHHHHHHhc
Q 006122 121 VK------VGEEVGYTIRFEDFTNKDLTAIKFLTDGVLLREMMDDPLLTKYSVIMVDEAHERSISTDILLGLLKKIQRCR 194 (660)
Q Consensus 121 ~~------~~~~vg~~~~~~~~~~~~~~~I~v~T~~~ll~~l~~~~~l~~~~~iIiDE~Her~~~~d~ll~~l~~~~~~~ 194 (660)
.. +....|..............+|+++|++. ..+.+.++++|||||||||...+|+++.+++.+....
T Consensus 248 ~~~~~g~~v~v~~Gg~~~~~~~t~~k~~~Ilv~T~~L------~l~~L~~v~~VVIDEaHEr~~~~DllL~llk~~~~~~ 321 (675)
T PHA02653 248 FDEIDGSPISLKYGSIPDELINTNPKPYGLVFSTHKL------TLNKLFDYGTVIIDEVHEHDQIGDIIIAVARKHIDKI 321 (675)
T ss_pred ccccCCceEEEEECCcchHHhhcccCCCCEEEEeCcc------cccccccCCEEEccccccCccchhHHHHHHHHhhhhc
Confidence 32 22233322210001111146899999763 2345889999999999999999999999988765432
Q ss_pred CCceEEEeeccc--chHHHHHHhhcCCCCCCCcccccCCCCCCeEEEECCcc-ccceEEecCCCc-----hhHHHHHHHH
Q 006122 195 SDLRLIISSATI--EAKSMSAFFHARKGRRGLEGVELVPRLEPAILSVEGRG-FNVQIHYVEEPV-----SDYVQAAVST 266 (660)
Q Consensus 195 ~~~kii~~SAT~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~v~~~~~~~~~-----~~~~~~~~~~ 266 (660)
.|+++||||+ +.+.+.+||++.. .+.++++. +|++.+|..... .++.......
T Consensus 322 --rq~ILmSATl~~dv~~l~~~~~~p~-----------------~I~I~grt~~pV~~~yi~~~~~~~~~~~y~~~~k~~ 382 (675)
T PHA02653 322 --RSLFLMTATLEDDRDRIKEFFPNPA-----------------FVHIPGGTLFPISEVYVKNKYNPKNKRAYIEEEKKN 382 (675)
T ss_pred --CEEEEEccCCcHhHHHHHHHhcCCc-----------------EEEeCCCcCCCeEEEEeecCcccccchhhhHHHHHH
Confidence 4899999999 5668889987655 78888885 999999876542 1222222222
Q ss_pred HHHHHh---cCCCCcEEEEcCCHHHHHHHHHHHHHHhhhccCCCCCeEEEEccCCCCHHHHhhhcCCC-CCCCcEEEEeC
Q 006122 267 VLLIHD---KEPPGDILVFLTGQDDIDATIQLLTEEARTSKKNSSGLIILPLYSGLSRAEQEQVFSPT-PRGKRKVVIST 342 (660)
Q Consensus 267 ~~~~~~---~~~~~~iLVF~~~~~~i~~l~~~L~~~~~~~~~~~~~~~v~~lh~~l~~~~r~~v~~~f-~~g~~~vlvaT 342 (660)
+...+. ...++++|||+||+++++.+++.|.+.. +++.+.++||+|++.+ ++++.| ++|+++|||||
T Consensus 383 ~l~~L~~~~~~~~g~iLVFlpg~~ei~~l~~~L~~~~-------~~~~v~~LHG~Lsq~e--q~l~~ff~~gk~kILVAT 453 (675)
T PHA02653 383 IVTALKKYTPPKGSSGIVFVASVSQCEEYKKYLEKRL-------PIYDFYIIHGKVPNID--EILEKVYSSKNPSIIIST 453 (675)
T ss_pred HHHHHHHhhcccCCcEEEEECcHHHHHHHHHHHHhhc-------CCceEEeccCCcCHHH--HHHHHHhccCceeEEecc
Confidence 222222 2245789999999999999999997652 3688999999999764 344454 68999999999
Q ss_pred CCcccccCCCCeEEEEeCCCccceeecCCCCcccceeeecCHHhHHHhhcccCCCCCcEEEEccChHHhhhhCCCCCCCc
Q 006122 343 NIAETSLTLEGIVYVVDSGFSKQRFYNPISDIENLVVAPISKASARQRAGRAGRVRPGKCYRLYTEEYFVKEIPAEGIPE 422 (660)
Q Consensus 343 ~i~e~Gidip~v~~VId~g~~k~~~~~~~~~~~~l~~~~~s~~~~~QR~GRaGR~~~G~~~~l~~~~~~~~~~~~~~~pe 422 (660)
|+||+|||||+|++|||+|+++.+. +..+. ..|+|+++|.||+|||||.++|.||+||++++.. ++++
T Consensus 454 dIAERGIDIp~V~~VID~G~~k~p~--~~~g~----~~~iSkasa~QRaGRAGR~~~G~c~rLyt~~~~~------pI~r 521 (675)
T PHA02653 454 PYLESSVTIRNATHVYDTGRVYVPE--PFGGK----EMFISKSMRTQRKGRVGRVSPGTYVYFYDLDLLK------PIKR 521 (675)
T ss_pred ChhhccccccCeeEEEECCCccCCC--cccCc----ccccCHHHHHHhccCcCCCCCCeEEEEECHHHhH------HHHH
Confidence 9999999999999999999877653 33333 3599999999999999999999999999998741 1344
Q ss_pred cccccchhHHHHHHHcCCCCccCCCCCCCCCHHHHHHHHHHHHHCCCCCCCCCcchHH--HHHhccCCCChhhhHHHHhh
Q 006122 423 MQRSNLVSCVIQLKALGIDNILGFDWPASPPPEAMIRALEVLYSLGVLDDDAKLTSPT--GFQVAEIPLEPMISKMILSS 500 (660)
Q Consensus 423 i~~~~l~~~~l~l~~~~~~~~~~~~~~~~p~~~~~~~al~~L~~lgald~~~~lT~~l--G~~~~~lpl~p~~~~~l~~~ 500 (660)
+...+|.+++|+++++|++.. .+.|++||+.+++.+|++.|..+||+|+ ++| .+ |+.++.+ +.||+++.|
T Consensus 522 i~~~~L~~~vL~lk~~g~~~~-~~~~ldpP~~~~l~~A~~~L~~lga~~~--~l~-~l~~~~~~~~~----~~~k~~~~g 593 (675)
T PHA02653 522 IDSEFLHNYILYAKYFNLTLP-EDLFVIPSNLDRLRKTEEYIDSFNISIE--KWY-EILSNYYVNML----EYAKIYVKG 593 (675)
T ss_pred HhHHHHHHHHHHHHHcCCCCc-ccccCCCCCHHHHHHHHHHHHHcCCCch--hhh-hhhccccHHHH----HHhHHHhcc
Confidence 444458999999999999544 4559999999999999999999998865 899 59 9999998 999999887
Q ss_pred cc
Q 006122 501 NE 502 (660)
Q Consensus 501 ~~ 502 (660)
..
T Consensus 594 ~~ 595 (675)
T PHA02653 594 GI 595 (675)
T ss_pred cH
Confidence 44
No 14
>PRK01172 ski2-like helicase; Provisional
Probab=100.00 E-value=1.8e-44 Score=411.26 Aligned_cols=446 Identities=17% Similarity=0.158 Sum_probs=299.6
Q ss_pred CCCCCCCccchHhHHHHhcCCCcHHHHHHHHHHHhcCCEEEEEcCCCCcHHHHHHHHHHhccccCCCeEEEEeCchHHHH
Q 006122 29 LSSASSIGYGYASIEKQRQRLPVYKYRTAILYLVETHATTIIVGETGSGKTTQIPQYLKEAGWADGGRVIACTQPRRLAV 108 (660)
Q Consensus 29 ~~~~~~~~~~~~~~~~~~~~lPi~~~~~~i~~~l~~~~~vii~apTGsGKT~~ip~~l~~~~~~~~~~~i~v~p~r~la~ 108 (660)
|+++++.......+.. ....++++|.++++.+.++++++++||||||||++....+.+.. ..+.++|+++|+++|+.
T Consensus 3 ~~~~~l~~~~~~~~~~--~~~~l~~~Q~~ai~~l~~~~nvlv~apTGSGKTl~a~lail~~l-~~~~k~v~i~P~raLa~ 79 (674)
T PRK01172 3 ISDLGYDDEFLNLFTG--NDFELYDHQRMAIEQLRKGENVIVSVPTAAGKTLIAYSAIYETF-LAGLKSIYIVPLRSLAM 79 (674)
T ss_pred HhhcCCCHHHHHHHhh--CCCCCCHHHHHHHHHHhcCCcEEEECCCCchHHHHHHHHHHHHH-HhCCcEEEEechHHHHH
Confidence 5667777766554433 23457999999999999999999999999999987776666543 24567899999999988
Q ss_pred HHHHHHHH-HHhCCeeeeEEeeeeeccccCCCCCceEEEechHHHHHHHhcCCC-CCCCcEEEEeCCCcCCc--ChhHHH
Q 006122 109 QAVASRVA-EEMGVKVGEEVGYTIRFEDFTNKDLTAIKFLTDGVLLREMMDDPL-LTKYSVIMVDEAHERSI--STDILL 184 (660)
Q Consensus 109 ~~~~~~~~-~~~~~~~~~~vg~~~~~~~~~~~~~~~I~v~T~~~ll~~l~~~~~-l~~~~~iIiDE~Her~~--~~d~ll 184 (660)
|...+.-. ...|..++..+|....... ... ..+|+++||+.+...+..++. +.++++||+||+|..+- ....+.
T Consensus 80 q~~~~~~~l~~~g~~v~~~~G~~~~~~~-~~~-~~dIiv~Tpek~~~l~~~~~~~l~~v~lvViDEaH~l~d~~rg~~le 157 (674)
T PRK01172 80 EKYEELSRLRSLGMRVKISIGDYDDPPD-FIK-RYDVVILTSEKADSLIHHDPYIINDVGLIVADEIHIIGDEDRGPTLE 157 (674)
T ss_pred HHHHHHHHHhhcCCeEEEEeCCCCCChh-hhc-cCCEEEECHHHHHHHHhCChhHHhhcCEEEEecchhccCCCccHHHH
Confidence 75433211 2346666666663221111 112 579999999999888776655 89999999999996531 223455
Q ss_pred HHHHHHHHhcCCceEEEeeccc-chHHHHHHhhcCCCCCCCcccccCCCCCCeEEEECCccccceEE-------ecCCCc
Q 006122 185 GLLKKIQRCRSDLRLIISSATI-EAKSMSAFFHARKGRRGLEGVELVPRLEPAILSVEGRGFNVQIH-------YVEEPV 256 (660)
Q Consensus 185 ~~l~~~~~~~~~~kii~~SAT~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~-------~~~~~~ 256 (660)
.++.++...+++.|+|+||||+ +..++++|++....... .+..|++.. +.+...
T Consensus 158 ~ll~~~~~~~~~~riI~lSATl~n~~~la~wl~~~~~~~~------------------~r~vpl~~~i~~~~~~~~~~~~ 219 (674)
T PRK01172 158 TVLSSARYVNPDARILALSATVSNANELAQWLNASLIKSN------------------FRPVPLKLGILYRKRLILDGYE 219 (674)
T ss_pred HHHHHHHhcCcCCcEEEEeCccCCHHHHHHHhCCCccCCC------------------CCCCCeEEEEEecCeeeecccc
Confidence 5666666667889999999999 88999999976542221 122222211 111110
Q ss_pred hhHHHHHHHHHHHHHhcCCCCcEEEEcCCHHHHHHHHHHHHHHhhhccCC----------------CCCeEEEEccCCCC
Q 006122 257 SDYVQAAVSTVLLIHDKEPPGDILVFLTGQDDIDATIQLLTEEARTSKKN----------------SSGLIILPLYSGLS 320 (660)
Q Consensus 257 ~~~~~~~~~~~~~~~~~~~~~~iLVF~~~~~~i~~l~~~L~~~~~~~~~~----------------~~~~~v~~lh~~l~ 320 (660)
.... .....+.... ..++++||||+++++++.++..|.+.......- .-...+.+|||+|+
T Consensus 220 ~~~~-~~~~~i~~~~--~~~~~vLVF~~sr~~~~~~a~~L~~~~~~~~~~~~~~~~~~~~~~~L~~~l~~gv~~~hagl~ 296 (674)
T PRK01172 220 RSQV-DINSLIKETV--NDGGQVLVFVSSRKNAEDYAEMLIQHFPEFNDFKVSSENNNVYDDSLNEMLPHGVAFHHAGLS 296 (674)
T ss_pred cccc-cHHHHHHHHH--hCCCcEEEEeccHHHHHHHHHHHHHhhhhcccccccccccccccHHHHHHHhcCEEEecCCCC
Confidence 0000 0111111111 356789999999999999999998764321100 00135889999999
Q ss_pred HHHHhhhcCCCCCCCcEEEEeCCCcccccCCCCeEEEEeCCCccceeecCCCCcccceeeecCHHhHHHhhcccCCC---
Q 006122 321 RAEQEQVFSPTPRGKRKVVISTNIAETSLTLEGIVYVVDSGFSKQRFYNPISDIENLVVAPISKASARQRAGRAGRV--- 397 (660)
Q Consensus 321 ~~~r~~v~~~f~~g~~~vlvaT~i~e~Gidip~v~~VId~g~~k~~~~~~~~~~~~l~~~~~s~~~~~QR~GRaGR~--- 397 (660)
+++|..+++.|++|.++|||||+++++|+|+|+..+||+ |. ..|+.. ...|+|..+|.||+|||||.
T Consensus 297 ~~eR~~ve~~f~~g~i~VLvaT~~la~Gvnipa~~VII~-~~---~~~~~~------~~~~~s~~~~~Qm~GRAGR~g~d 366 (674)
T PRK01172 297 NEQRRFIEEMFRNRYIKVIVATPTLAAGVNLPARLVIVR-DI---TRYGNG------GIRYLSNMEIKQMIGRAGRPGYD 366 (674)
T ss_pred HHHHHHHHHHHHcCCCeEEEecchhhccCCCcceEEEEc-Cc---eEeCCC------CceeCCHHHHHHHhhcCCCCCCC
Confidence 999999999999999999999999999999999887775 22 223321 22389999999999999998
Q ss_pred CCcEEEEccC-hH---HhhhhCCCCCCCccccccc------hhHHHHHHHcCC----CCccCC---CCC--CCCC---HH
Q 006122 398 RPGKCYRLYT-EE---YFVKEIPAEGIPEMQRSNL------VSCVIQLKALGI----DNILGF---DWP--ASPP---PE 455 (660)
Q Consensus 398 ~~G~~~~l~~-~~---~~~~~~~~~~~pei~~~~l------~~~~l~l~~~~~----~~~~~~---~~~--~~p~---~~ 455 (660)
..|.++.+.. ++ .+...+.. .|+-..+.| ...++...+.|. .++.+| .|+ ..++ .+
T Consensus 367 ~~g~~~i~~~~~~~~~~~~~~l~~--~~~pi~S~l~~~~~~~~~~l~~i~~g~~~~~~d~~~~l~~tf~~~~~~~~~l~~ 444 (674)
T PRK01172 367 QYGIGYIYAASPASYDAAKKYLSG--EPEPVISYMGSQRKVRFNTLAAISMGLASSMEDLILFYNETLMAIQNGVDEIDY 444 (674)
T ss_pred CcceEEEEecCcccHHHHHHHHcC--CCCceeecCCCcccHHHHHHHHHHhcccCCHHHHHHHHHhhhhHhcCchHHHHH
Confidence 3677766643 22 22232222 232222222 222444455543 333333 343 3322 56
Q ss_pred HHHHHHHHHHHCCCCCCCC--CcchHHHHHhccCCCChhhhHHHHhhcccC-chhHHHHHH
Q 006122 456 AMIRALEVLYSLGVLDDDA--KLTSPTGFQVAEIPLEPMISKMILSSNELG-CSEEIITIS 513 (660)
Q Consensus 456 ~~~~al~~L~~lgald~~~--~lT~~lG~~~~~lpl~p~~~~~l~~~~~~~-c~~~~~~i~ 513 (660)
.++.+++.|.+.|+|++++ ..| ++|++++.+|++|..++.+..+..-. ....++.++
T Consensus 445 ~v~~~l~~L~~~~~i~~~~~~~~t-~lG~~~s~~~l~~~t~~~~~~~l~~~~~~~~~l~~~ 504 (674)
T PRK01172 445 YIESSLKFLKENGFIKGDVTLRAT-RLGKLTSDLYIDPESALILKSAFDHDYDEDLALYYI 504 (674)
T ss_pred HHHHHHHHHHHCCCcccCCcEeEC-HHHHHHHHhCCCHHHHHHHHHHhhccCCHHHHHHHh
Confidence 7899999999999998654 568 79999999999999999998887654 233344443
No 15
>PRK02362 ski2-like helicase; Provisional
Probab=100.00 E-value=8.2e-43 Score=400.20 Aligned_cols=449 Identities=22% Similarity=0.220 Sum_probs=304.2
Q ss_pred CCCCCCCccchHhHHHHhcCCCcHHHHHHHHHH-HhcCCEEEEEcCCCCcHHHHHHHHHHhccccCCCeEEEEeCchHHH
Q 006122 29 LSSASSIGYGYASIEKQRQRLPVYKYRTAILYL-VETHATTIIVGETGSGKTTQIPQYLKEAGWADGGRVIACTQPRRLA 107 (660)
Q Consensus 29 ~~~~~~~~~~~~~~~~~~~~lPi~~~~~~i~~~-l~~~~~vii~apTGsGKT~~ip~~l~~~~~~~~~~~i~v~p~r~la 107 (660)
|.+++++......+.+ +.---+++.|.+.++. +.++++++++||||||||......++... ..++++|+++|+++|+
T Consensus 3 ~~~l~lp~~~~~~l~~-~g~~~l~p~Q~~ai~~~~~~g~nvlv~APTGSGKTlia~lail~~l-~~~~kal~i~P~raLa 80 (737)
T PRK02362 3 IAELPLPEGVIEFYEA-EGIEELYPPQAEAVEAGLLDGKNLLAAIPTASGKTLIAELAMLKAI-ARGGKALYIVPLRALA 80 (737)
T ss_pred hhhcCCCHHHHHHHHh-CCCCcCCHHHHHHHHHHHhCCCcEEEECCCcchHHHHHHHHHHHHH-hcCCcEEEEeChHHHH
Confidence 6677777766554433 3333467788887776 78899999999999999966544444432 2567899999999999
Q ss_pred HHHHHHHHH-HHhCCeeeeEEeeeeeccccCCCCCceEEEechHHHHHHHhcCC-CCCCCcEEEEeCCCcCC--cChhHH
Q 006122 108 VQAVASRVA-EEMGVKVGEEVGYTIRFEDFTNKDLTAIKFLTDGVLLREMMDDP-LLTKYSVIMVDEAHERS--ISTDIL 183 (660)
Q Consensus 108 ~~~~~~~~~-~~~~~~~~~~vg~~~~~~~~~~~~~~~I~v~T~~~ll~~l~~~~-~l~~~~~iIiDE~Her~--~~~d~l 183 (660)
.|.+.+... ...|..++..+|....... ... ..+|+|+||+++...+.+.. ++.++++|||||+|..+ .....+
T Consensus 81 ~q~~~~~~~~~~~g~~v~~~tGd~~~~~~-~l~-~~~IiV~Tpek~~~llr~~~~~l~~v~lvViDE~H~l~d~~rg~~l 158 (737)
T PRK02362 81 SEKFEEFERFEELGVRVGISTGDYDSRDE-WLG-DNDIIVATSEKVDSLLRNGAPWLDDITCVVVDEVHLIDSANRGPTL 158 (737)
T ss_pred HHHHHHHHHhhcCCCEEEEEeCCcCcccc-ccC-CCCEEEECHHHHHHHHhcChhhhhhcCEEEEECccccCCCcchHHH
Confidence 986554321 1237778777774322221 123 57999999999988876543 48899999999999432 122344
Q ss_pred HHHHHHHHHhcCCceEEEeeccc-chHHHHHHhhcCCCCCCCcccccCCCCCCeEEEECCc-cccceEEecCCCchhHHH
Q 006122 184 LGLLKKIQRCRSDLRLIISSATI-EAKSMSAFFHARKGRRGLEGVELVPRLEPAILSVEGR-GFNVQIHYVEEPVSDYVQ 261 (660)
Q Consensus 184 l~~l~~~~~~~~~~kii~~SAT~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~v~~~~~~~~~~~~~~ 261 (660)
..++.++....++.|+|++|||+ +++.+++|++.......+++.+.... +..... .++........... .
T Consensus 159 e~il~rl~~~~~~~qii~lSATl~n~~~la~wl~~~~~~~~~rpv~l~~~-----v~~~~~~~~~~~~~~~~~~~~---~ 230 (737)
T PRK02362 159 EVTLAKLRRLNPDLQVVALSATIGNADELADWLDAELVDSEWRPIDLREG-----VFYGGAIHFDDSQREVEVPSK---D 230 (737)
T ss_pred HHHHHHHHhcCCCCcEEEEcccCCCHHHHHHHhCCCcccCCCCCCCCeee-----EecCCeeccccccccCCCccc---h
Confidence 55566666667889999999999 88999999986554333333222110 000000 00111111111111 1
Q ss_pred HHHHHHHHHHhcCCCCcEEEEcCCHHHHHHHHHHHHHHhhhc----------------cCC-----------CCCeEEEE
Q 006122 262 AAVSTVLLIHDKEPPGDILVFLTGQDDIDATIQLLTEEARTS----------------KKN-----------SSGLIILP 314 (660)
Q Consensus 262 ~~~~~~~~~~~~~~~~~iLVF~~~~~~i~~l~~~L~~~~~~~----------------~~~-----------~~~~~v~~ 314 (660)
.....+.... ..++++||||+++++++.+++.|.+..... ... .-...+.+
T Consensus 231 ~~~~~~~~~~--~~~~~~LVF~~sr~~~~~~a~~L~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~L~~~l~~gva~ 308 (737)
T PRK02362 231 DTLNLVLDTL--EEGGQCLVFVSSRRNAEGFAKRAASALKKTLTAAERAELAELAEEIREVSDTETSKDLADCVAKGAAF 308 (737)
T ss_pred HHHHHHHHHH--HcCCCeEEEEeCHHHHHHHHHHHHHHhhhcCCHHHHHHHHHHHHHHHhccCccccHHHHHHHHhCEEe
Confidence 2233333333 256789999999999999999987653210 000 00246999
Q ss_pred ccCCCCHHHHhhhcCCCCCCCcEEEEeCCCcccccCCCCeEEEEeCCCccceeecCCCCcccceeeecCHHhHHHhhccc
Q 006122 315 LYSGLSRAEQEQVFSPTPRGKRKVVISTNIAETSLTLEGIVYVVDSGFSKQRFYNPISDIENLVVAPISKASARQRAGRA 394 (660)
Q Consensus 315 lh~~l~~~~r~~v~~~f~~g~~~vlvaT~i~e~Gidip~v~~VId~g~~k~~~~~~~~~~~~l~~~~~s~~~~~QR~GRa 394 (660)
|||+|++++|..+++.|++|.++|||||+++++|+|+|++++||+. ...||+..+. .|++..+|.||+|||
T Consensus 309 hHagl~~~eR~~ve~~Fr~G~i~VLvaT~tla~GvnlPa~~VVI~~----~~~yd~~~g~-----~~~s~~~y~Qm~GRA 379 (737)
T PRK02362 309 HHAGLSREHRELVEDAFRDRLIKVISSTPTLAAGLNLPARRVIIRD----YRRYDGGAGM-----QPIPVLEYHQMAGRA 379 (737)
T ss_pred ecCCCCHHHHHHHHHHHHcCCCeEEEechhhhhhcCCCceEEEEec----ceeecCCCCc-----eeCCHHHHHHHhhcC
Confidence 9999999999999999999999999999999999999999999963 3457765443 399999999999999
Q ss_pred CCC---CCcEEEEccChH-----HhhhhCCCCCCCcccc------ccchhHHHHHHHcCCC----CccC---CCCCCCC-
Q 006122 395 GRV---RPGKCYRLYTEE-----YFVKEIPAEGIPEMQR------SNLVSCVIQLKALGID----NILG---FDWPASP- 452 (660)
Q Consensus 395 GR~---~~G~~~~l~~~~-----~~~~~~~~~~~pei~~------~~l~~~~l~l~~~~~~----~~~~---~~~~~~p- 452 (660)
||. ..|.|+.+.... .++..+.. .|+-.. ..|...++...+.|.- ++.. ..|+..+
T Consensus 380 GR~g~d~~G~~ii~~~~~~~~~~~~~~~l~~--~~~~i~S~l~~~~~l~~~lla~I~~~~~~~~~d~~~~l~~Tf~~~~~ 457 (737)
T PRK02362 380 GRPGLDPYGEAVLLAKSYDELDELFERYIWA--DPEDVRSKLATEPALRTHVLSTIASGFARTRDGLLEFLEATFYATQT 457 (737)
T ss_pred CCCCCCCCceEEEEecCchhHHHHHHHHHhC--CCCceeecCCChhhHHHHHHHHHHhCccCCHHHHHHHHHhChHHhhc
Confidence 998 349999998653 12221211 222222 2356666766666531 1111 1333222
Q ss_pred -----CHHHHHHHHHHHHHCCCCCCCCC---cchHHHHHhccCCCChhhhHHHHhhccc
Q 006122 453 -----PPEAMIRALEVLYSLGVLDDDAK---LTSPTGFQVAEIPLEPMISKMILSSNEL 503 (660)
Q Consensus 453 -----~~~~~~~al~~L~~lgald~~~~---lT~~lG~~~~~lpl~p~~~~~l~~~~~~ 503 (660)
..+.++.+++.|.+.|+|+.++. .| ++|++++.++++|..+..+..+...
T Consensus 458 ~~~~~l~~~v~~~l~~L~~~~~i~~~~~~~~~t-~lG~~~s~~~l~~~t~~~~~~~l~~ 515 (737)
T PRK02362 458 DDTGRLERVVDDVLDFLERNGMIEEDGETLEAT-ELGHLVSRLYIDPLSAAEIIDGLEA 515 (737)
T ss_pred cchHHHHHHHHHHHHHHHHCCCeeecCCeEeEC-hHHHHHHHhcCCHHHHHHHHHHhhh
Confidence 34568899999999999987654 78 6999999999999999999887664
No 16
>KOG0330 consensus ATP-dependent RNA helicase [RNA processing and modification]
Probab=100.00 E-value=1.7e-42 Score=339.90 Aligned_cols=338 Identities=20% Similarity=0.208 Sum_probs=264.0
Q ss_pred ccccCCCCCCCccchHhHHHHhcCCCcHHHHHHHHHHHhcCCEEEEEcCCCCcHH--HHHHHHHHhccccCCCeEEEEeC
Q 006122 25 LSSSLSSASSIGYGYASIEKQRQRLPVYKYRTAILYLVETHATTIIVGETGSGKT--TQIPQYLKEAGWADGGRVIACTQ 102 (660)
Q Consensus 25 ~~~~~~~~~~~~~~~~~~~~~~~~lPi~~~~~~i~~~l~~~~~vii~apTGsGKT--~~ip~~l~~~~~~~~~~~i~v~p 102 (660)
-.-+|.++.+++....+..+.....|...|++.|.-++ +++++|..|.|||||| |.+|.+-.-....+...+++++|
T Consensus 59 ~~~sf~dLgv~~~L~~ac~~l~~~~PT~IQ~~aiP~~L-~g~dvIglAeTGSGKT~afaLPIl~~LL~~p~~~~~lVLtP 137 (476)
T KOG0330|consen 59 SFKSFADLGVHPELLEACQELGWKKPTKIQSEAIPVAL-GGRDVIGLAETGSGKTGAFALPILQRLLQEPKLFFALVLTP 137 (476)
T ss_pred hhcchhhcCcCHHHHHHHHHhCcCCCchhhhhhcchhh-CCCcEEEEeccCCCchhhhHHHHHHHHHcCCCCceEEEecC
Confidence 44579999999999998888888889888887777666 4566999999999999 88885533332223356899999
Q ss_pred chHHHHH--HHHHHHHHHhCCeeeeEEeeeeec--cccCCCCCceEEEechHHHHHHHhcC-CC-CCCCcEEEEeCCCcC
Q 006122 103 PRRLAVQ--AVASRVAEEMGVKVGEEVGYTIRF--EDFTNKDLTAIKFLTDGVLLREMMDD-PL-LTKYSVIMVDEAHER 176 (660)
Q Consensus 103 ~r~la~~--~~~~~~~~~~~~~~~~~vg~~~~~--~~~~~~~~~~I~v~T~~~ll~~l~~~-~~-l~~~~~iIiDE~Her 176 (660)
+|+||.| .+.+.+....|..+...+|..... ...... +++|+|+|||.|.+++.+. .+ +..++++|+|||+ |
T Consensus 138 tRELA~QI~e~fe~Lg~~iglr~~~lvGG~~m~~q~~~L~k-kPhilVaTPGrL~dhl~~Tkgf~le~lk~LVlDEAD-r 215 (476)
T KOG0330|consen 138 TRELAQQIAEQFEALGSGIGLRVAVLVGGMDMMLQANQLSK-KPHILVATPGRLWDHLENTKGFSLEQLKFLVLDEAD-R 215 (476)
T ss_pred cHHHHHHHHHHHHHhccccCeEEEEEecCchHHHHHHHhhc-CCCEEEeCcHHHHHHHHhccCccHHHhHHHhhchHH-h
Confidence 9999988 555556666788888888844221 112234 7999999999999999743 33 8999999999999 9
Q ss_pred CcChhHHHHHHHHHHHhcCCceEEEeeccc--chHHHHHHhhcCCCCCCCcccccCCCCCCeEEEECCcc---ccceEEe
Q 006122 177 SISTDILLGLLKKIQRCRSDLRLIISSATI--EAKSMSAFFHARKGRRGLEGVELVPRLEPAILSVEGRG---FNVQIHY 251 (660)
Q Consensus 177 ~~~~d~ll~~l~~~~~~~~~~kii~~SAT~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~v~~~~ 251 (660)
.++.||...+-+.+...+...|.+++|||+ .+.+++.---..+ ..+.+.... ..++.+|
T Consensus 216 lLd~dF~~~ld~ILk~ip~erqt~LfsATMt~kv~kL~rasl~~p----------------~~v~~s~ky~tv~~lkQ~y 279 (476)
T KOG0330|consen 216 LLDMDFEEELDYILKVIPRERQTFLFSATMTKKVRKLQRASLDNP----------------VKVAVSSKYQTVDHLKQTY 279 (476)
T ss_pred hhhhhhHHHHHHHHHhcCccceEEEEEeecchhhHHHHhhccCCC----------------eEEeccchhcchHHhhhhe
Confidence 999999988888888888899999999999 4455553221111 123333332 1244455
Q ss_pred cCCCchhHHHHHHHHHHHHHhcCCCCcEEEEcCCHHHHHHHHHHHHHHhhhccCCCCCeEEEEccCCCCHHHHhhhcCCC
Q 006122 252 VEEPVSDYVQAAVSTVLLIHDKEPPGDILVFLTGQDDIDATIQLLTEEARTSKKNSSGLIILPLYSGLSRAEQEQVFSPT 331 (660)
Q Consensus 252 ~~~~~~~~~~~~~~~~~~~~~~~~~~~iLVF~~~~~~i~~l~~~L~~~~~~~~~~~~~~~v~~lh~~l~~~~r~~v~~~f 331 (660)
+..+..+... .++++.+...++.+||||++...++.++-.|... ++...++||.|++..|.-.++.|
T Consensus 280 lfv~~k~K~~----yLV~ll~e~~g~s~iVF~~t~~tt~~la~~L~~l---------g~~a~~LhGqmsq~~Rlg~l~~F 346 (476)
T KOG0330|consen 280 LFVPGKDKDT----YLVYLLNELAGNSVIVFCNTCNTTRFLALLLRNL---------GFQAIPLHGQMSQSKRLGALNKF 346 (476)
T ss_pred Eeccccccch----hHHHHHHhhcCCcEEEEEeccchHHHHHHHHHhc---------CcceecccchhhHHHHHHHHHHH
Confidence 5544433222 2233344456688999999999999999999876 89999999999999999999999
Q ss_pred CCCCcEEEEeCCCcccccCCCCeEEEEeCCCccceeecCCCCcccceeeecCHHhHHHhhcccCCC-CCcEEEEccChHH
Q 006122 332 PRGKRKVVISTNIAETSLTLEGIVYVVDSGFSKQRFYNPISDIENLVVAPISKASARQRAGRAGRV-RPGKCYRLYTEEY 410 (660)
Q Consensus 332 ~~g~~~vlvaT~i~e~Gidip~v~~VId~g~~k~~~~~~~~~~~~l~~~~~s~~~~~QR~GRaGR~-~~G~~~~l~~~~~ 410 (660)
++|.+.|++|||++++|+|||.|++|||+++ |.+..+|+||+||+||. ++|+++.|++.-+
T Consensus 347 k~~~r~iLv~TDVaSRGLDip~Vd~VVNyDi------------------P~~skDYIHRvGRtaRaGrsG~~ItlVtqyD 408 (476)
T KOG0330|consen 347 KAGARSILVCTDVASRGLDIPHVDVVVNYDI------------------PTHSKDYIHRVGRTARAGRSGKAITLVTQYD 408 (476)
T ss_pred hccCCcEEEecchhcccCCCCCceEEEecCC------------------CCcHHHHHHHcccccccCCCcceEEEEehhh
Confidence 9999999999999999999999999999888 88999999999999999 9999999999844
Q ss_pred hh
Q 006122 411 FV 412 (660)
Q Consensus 411 ~~ 412 (660)
.+
T Consensus 409 ve 410 (476)
T KOG0330|consen 409 VE 410 (476)
T ss_pred hH
Confidence 33
No 17
>PRK00254 ski2-like helicase; Provisional
Probab=100.00 E-value=3e-40 Score=378.10 Aligned_cols=461 Identities=18% Similarity=0.137 Sum_probs=292.4
Q ss_pred CCCCCCCccchHhHHHHhcCCCcHHHHHHHHHH-HhcCCEEEEEcCCCCcHHHHHHHHHHhccccCCCeEEEEeCchHHH
Q 006122 29 LSSASSIGYGYASIEKQRQRLPVYKYRTAILYL-VETHATTIIVGETGSGKTTQIPQYLKEAGWADGGRVIACTQPRRLA 107 (660)
Q Consensus 29 ~~~~~~~~~~~~~~~~~~~~lPi~~~~~~i~~~-l~~~~~vii~apTGsGKT~~ip~~l~~~~~~~~~~~i~v~p~r~la 107 (660)
|.+++++......+.+ +.---.++.|.+++.. +.+++++++++|||||||......+.......++++|+++|+++|+
T Consensus 3 ~~~l~l~~~~~~~l~~-~g~~~l~~~Q~~ai~~~~~~g~nvlv~apTGsGKT~~~~l~il~~l~~~~~~~l~l~P~~aLa 81 (720)
T PRK00254 3 VDELRVDERIKRVLKE-RGIEELYPPQAEALKSGVLEGKNLVLAIPTASGKTLVAEIVMVNKLLREGGKAVYLVPLKALA 81 (720)
T ss_pred HHHcCCCHHHHHHHHh-CCCCCCCHHHHHHHHHHHhCCCcEEEECCCCcHHHHHHHHHHHHHHHhcCCeEEEEeChHHHH
Confidence 5677777766655544 3333456777777764 8889999999999999996554444443333567899999999999
Q ss_pred HHHHHHHHH-HHhCCeeeeEEeeeeeccccCCCCCceEEEechHHHHHHHhcC-CCCCCCcEEEEeCCCcCCcChhHHHH
Q 006122 108 VQAVASRVA-EEMGVKVGEEVGYTIRFEDFTNKDLTAIKFLTDGVLLREMMDD-PLLTKYSVIMVDEAHERSISTDILLG 185 (660)
Q Consensus 108 ~~~~~~~~~-~~~~~~~~~~vg~~~~~~~~~~~~~~~I~v~T~~~ll~~l~~~-~~l~~~~~iIiDE~Her~~~~d~ll~ 185 (660)
.|.+...-. ...+..++..+|..... ..... .++|+|+||+++...+... .+++++++||+||+|..+ +.+....
T Consensus 82 ~q~~~~~~~~~~~g~~v~~~~Gd~~~~-~~~~~-~~~IiV~Tpe~~~~ll~~~~~~l~~l~lvViDE~H~l~-~~~rg~~ 158 (720)
T PRK00254 82 EEKYREFKDWEKLGLRVAMTTGDYDST-DEWLG-KYDIIIATAEKFDSLLRHGSSWIKDVKLVVADEIHLIG-SYDRGAT 158 (720)
T ss_pred HHHHHHHHHHhhcCCEEEEEeCCCCCc-hhhhc-cCCEEEEcHHHHHHHHhCCchhhhcCCEEEEcCcCccC-CccchHH
Confidence 886543211 23567777777743221 11223 5899999999998877654 358999999999999432 2111111
Q ss_pred HHHHHHHhcCCceEEEeeccc-chHHHHHHhhcCCCCCCCcccccCCCCCCeEEEECCccccceEEecCCCchhHHHHHH
Q 006122 186 LLKKIQRCRSDLRLIISSATI-EAKSMSAFFHARKGRRGLEGVELVPRLEPAILSVEGRGFNVQIHYVEEPVSDYVQAAV 264 (660)
Q Consensus 186 ~l~~~~~~~~~~kii~~SAT~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~ 264 (660)
+-..+.+...+.|+|++|||+ |++.+++|++........++.+... .+...+ ..++.......+.....
T Consensus 159 le~il~~l~~~~qiI~lSATl~n~~~la~wl~~~~~~~~~rpv~l~~-----~~~~~~-----~~~~~~~~~~~~~~~~~ 228 (720)
T PRK00254 159 LEMILTHMLGRAQILGLSATVGNAEELAEWLNAELVVSDWRPVKLRK-----GVFYQG-----FLFWEDGKIERFPNSWE 228 (720)
T ss_pred HHHHHHhcCcCCcEEEEEccCCCHHHHHHHhCCccccCCCCCCccee-----eEecCC-----eeeccCcchhcchHHHH
Confidence 212222345678999999999 8999999998654222222111100 000011 01111111111111122
Q ss_pred HHHHHHHhcCCCCcEEEEcCCHHHHHHHHHHHHHHhhhcc----------------CC--------CCCeEEEEccCCCC
Q 006122 265 STVLLIHDKEPPGDILVFLTGQDDIDATIQLLTEEARTSK----------------KN--------SSGLIILPLYSGLS 320 (660)
Q Consensus 265 ~~~~~~~~~~~~~~iLVF~~~~~~i~~l~~~L~~~~~~~~----------------~~--------~~~~~v~~lh~~l~ 320 (660)
..+.+... .++++||||++++.++.++..|.+.+.... .. .-...|.+|||+|+
T Consensus 229 ~~~~~~i~--~~~~vLVF~~sr~~~~~~a~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~l~~gv~~hHagl~ 306 (720)
T PRK00254 229 SLVYDAVK--KGKGALVFVNTRRSAEKEALELAKKIKRFLTKPELRALKELADSLEENPTNEKLKKALRGGVAFHHAGLG 306 (720)
T ss_pred HHHHHHHH--hCCCEEEEEcChHHHHHHHHHHHHHHHHhcCchhHHHHHHHHHHHhcCCCcHHHHHHHhhCEEEeCCCCC
Confidence 22223222 467899999999999999888865432100 00 01235999999999
Q ss_pred HHHHhhhcCCCCCCCcEEEEeCCCcccccCCCCeEEEEeCCCccceeecCCCCcccceeeecCHHhHHHhhcccCCC---
Q 006122 321 RAEQEQVFSPTPRGKRKVVISTNIAETSLTLEGIVYVVDSGFSKQRFYNPISDIENLVVAPISKASARQRAGRAGRV--- 397 (660)
Q Consensus 321 ~~~r~~v~~~f~~g~~~vlvaT~i~e~Gidip~v~~VId~g~~k~~~~~~~~~~~~l~~~~~s~~~~~QR~GRaGR~--- 397 (660)
+++|..+++.|++|.++|||||+++++|+|+|++++||... ..|+ ..++ .+.+..+|+||+|||||.
T Consensus 307 ~~eR~~ve~~F~~G~i~VLvaT~tLa~Gvnipa~~vVI~~~----~~~~-~~~~-----~~~~~~~~~Qm~GRAGR~~~d 376 (720)
T PRK00254 307 RTERVLIEDAFREGLIKVITATPTLSAGINLPAFRVIIRDT----KRYS-NFGW-----EDIPVLEIQQMMGRAGRPKYD 376 (720)
T ss_pred HHHHHHHHHHHHCCCCeEEEeCcHHhhhcCCCceEEEECCc----eEcC-CCCc-----eeCCHHHHHHhhhccCCCCcC
Confidence 99999999999999999999999999999999999999633 2343 1121 266788999999999996
Q ss_pred CCcEEEEccChHH----hhhhCCCCCCCccc------cccchhHHHHHHHcC-CCCc------c--CCCCCCCCC----H
Q 006122 398 RPGKCYRLYTEEY----FVKEIPAEGIPEMQ------RSNLVSCVIQLKALG-IDNI------L--GFDWPASPP----P 454 (660)
Q Consensus 398 ~~G~~~~l~~~~~----~~~~~~~~~~pei~------~~~l~~~~l~l~~~~-~~~~------~--~~~~~~~p~----~ 454 (660)
..|.++.+.+.+. ++. +.. ..||-. ...|...++.....+ +.+. . .|.+...|+ .
T Consensus 377 ~~G~~ii~~~~~~~~~~~~~-~~~-~~pe~l~s~l~~es~l~~~ll~~i~~~~~~~~~~~~~~l~~Tf~~~~~~~~~~~~ 454 (720)
T PRK00254 377 EVGEAIIVATTEEPSKLMER-YIF-GKPEKLFSMLSNESAFRSQVLALITNFGVSNFKELVNFLERTFYAHQRKDLYSLE 454 (720)
T ss_pred CCceEEEEecCcchHHHHHH-HHh-CCchhhhccCCchHHHHHHHHHHHHhCCCCCHHHHHHHHHhCHHHHhhcChHhHH
Confidence 5799998886432 333 211 112221 123444555555544 2221 1 111222233 3
Q ss_pred HHHHHHHHHHHHCCCCCCC--C--CcchHHHHHhccCCCChhhhHHHHhhccc----CchhHHHHHHhhccc
Q 006122 455 EAMIRALEVLYSLGVLDDD--A--KLTSPTGFQVAEIPLEPMISKMILSSNEL----GCSEEIITISAVLSI 518 (660)
Q Consensus 455 ~~~~~al~~L~~lgald~~--~--~lT~~lG~~~~~lpl~p~~~~~l~~~~~~----~c~~~~~~i~a~ls~ 518 (660)
+.++.++..|.+.|+|+.+ + ..| ++|++++.++++|..++.+..+..- .....++.+++....
T Consensus 455 ~~v~~~l~~L~~~~~i~~~~~~~~~~t-~lG~~~s~~~i~~~t~~~~~~~l~~~~~~~~~~~~l~~~~~~~e 525 (720)
T PRK00254 455 EKAKEIVYFLLENEFIDIDLEDRFIPL-PLGIRTSQLYIDPLTAKKFKDAFPKIEKNPNPLGIFQLIASTPD 525 (720)
T ss_pred HHHHHHHHHHHHCCCeEEcCCCCEeeC-hHHHHHHHHhCCHHHHHHHHHHHHhhccCCCHHHHHHHhhCCcc
Confidence 4577899999999999643 3 358 7999999999999999999877642 234455555544433
No 18
>KOG0331 consensus ATP-dependent RNA helicase [RNA processing and modification]
Probab=100.00 E-value=1.2e-41 Score=356.47 Aligned_cols=340 Identities=19% Similarity=0.243 Sum_probs=258.5
Q ss_pred cCCCCCCCccchHhHHHHhcCCCcHHHHHHHHHHHhcCCEEEEEcCCCCcHH--HHHHHHHHhcc------ccCCCeEEE
Q 006122 28 SLSSASSIGYGYASIEKQRQRLPVYKYRTAILYLVETHATTIIVGETGSGKT--TQIPQYLKEAG------WADGGRVIA 99 (660)
Q Consensus 28 ~~~~~~~~~~~~~~~~~~~~~lPi~~~~~~i~~~l~~~~~vii~apTGsGKT--~~ip~~l~~~~------~~~~~~~i~ 99 (660)
-|+.++++......+..+...-|...|...+.- +..+++++..|.|||||| |++|.+.+... ...++.+++
T Consensus 92 ~f~~~~ls~~~~~~lk~~g~~~PtpIQaq~wp~-~l~GrD~v~iA~TGSGKTLay~lP~i~~l~~~~~~~~~~~~P~vLV 170 (519)
T KOG0331|consen 92 AFQELGLSEELMKALKEQGFEKPTPIQAQGWPI-ALSGRDLVGIARTGSGKTLAYLLPAIVHLNNEQGKLSRGDGPIVLV 170 (519)
T ss_pred hhhcccccHHHHHHHHhcCCCCCchhhhcccce-eccCCceEEEeccCCcchhhhhhHHHHHHHhccccccCCCCCeEEE
Confidence 588999999998888888888888766655554 456677999999999999 99998776543 223466899
Q ss_pred EeCchHHHHH--HHHHHHHHHhCCeeeeEEeeeeeccc-cCCCCCceEEEechHHHHHHHhcCCC-CCCCcEEEEeCCCc
Q 006122 100 CTQPRRLAVQ--AVASRVAEEMGVKVGEEVGYTIRFED-FTNKDLTAIKFLTDGVLLREMMDDPL-LTKYSVIMVDEAHE 175 (660)
Q Consensus 100 v~p~r~la~~--~~~~~~~~~~~~~~~~~vg~~~~~~~-~~~~~~~~I~v~T~~~ll~~l~~~~~-l~~~~~iIiDE~He 175 (660)
++|+|+||.| ..+..+....+....+..|....... .......+|+++|||+|++++..... |.+++++|+|||+
T Consensus 171 L~PTRELA~QV~~~~~~~~~~~~~~~~cvyGG~~~~~Q~~~l~~gvdiviaTPGRl~d~le~g~~~l~~v~ylVLDEAD- 249 (519)
T KOG0331|consen 171 LAPTRELAVQVQAEAREFGKSLRLRSTCVYGGAPKGPQLRDLERGVDVVIATPGRLIDLLEEGSLNLSRVTYLVLDEAD- 249 (519)
T ss_pred EcCcHHHHHHHHHHHHHHcCCCCccEEEEeCCCCccHHHHHHhcCCcEEEeCChHHHHHHHcCCccccceeEEEeccHH-
Confidence 9999999988 33444444444445566663322111 11122589999999999999987766 9999999999999
Q ss_pred CCcChhHHHHHHHHHHHh-cCCceEEEeeccc--chHHHHHHhhcCCCCCCCcccccCCCCCCeEEEECCc-----cccc
Q 006122 176 RSISTDILLGLLKKIQRC-RSDLRLIISSATI--EAKSMSAFFHARKGRRGLEGVELVPRLEPAILSVEGR-----GFNV 247 (660)
Q Consensus 176 r~~~~d~ll~~l~~~~~~-~~~~kii~~SAT~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~v 247 (660)
|+++++|-..+-+.+.+. +++.|+++.|||. .+..+++-|...+.. +.+-+. .+.+
T Consensus 250 rMldmGFe~qI~~Il~~i~~~~rQtlm~saTwp~~v~~lA~~fl~~~~~----------------i~ig~~~~~~a~~~i 313 (519)
T KOG0331|consen 250 RMLDMGFEPQIRKILSQIPRPDRQTLMFSATWPKEVRQLAEDFLNNPIQ----------------INVGNKKELKANHNI 313 (519)
T ss_pred hhhccccHHHHHHHHHhcCCCcccEEEEeeeccHHHHHHHHHHhcCceE----------------EEecchhhhhhhcch
Confidence 999999998888888888 6666899999999 445565444334422 222111 1222
Q ss_pred eEEecCCCchhHHHHHHHHHHHHHhcCCCCcEEEEcCCHHHHHHHHHHHHHHhhhccCCCCCeEEEEccCCCCHHHHhhh
Q 006122 248 QIHYVEEPVSDYVQAAVSTVLLIHDKEPPGDILVFLTGQDDIDATIQLLTEEARTSKKNSSGLIILPLYSGLSRAEQEQV 327 (660)
Q Consensus 248 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iLVF~~~~~~i~~l~~~L~~~~~~~~~~~~~~~v~~lh~~l~~~~r~~v 327 (660)
...-....... ....+..++.......++++||||.+++.+++++..+... ++.+..+||+.++.+|..+
T Consensus 314 ~qive~~~~~~-K~~~l~~lL~~~~~~~~~KvIIFc~tkr~~~~l~~~l~~~---------~~~a~~iHGd~sQ~eR~~~ 383 (519)
T KOG0331|consen 314 RQIVEVCDETA-KLRKLGKLLEDISSDSEGKVIIFCETKRTCDELARNLRRK---------GWPAVAIHGDKSQSERDWV 383 (519)
T ss_pred hhhhhhcCHHH-HHHHHHHHHHHHhccCCCcEEEEecchhhHHHHHHHHHhc---------CcceeeecccccHHHHHHH
Confidence 22111112111 2223333333334667889999999999999999999875 6889999999999999999
Q ss_pred cCCCCCCCcEEEEeCCCcccccCCCCeEEEEeCCCccceeecCCCCcccceeeecCHHhHHHhhcccCCC-CCcEEEEcc
Q 006122 328 FSPTPRGKRKVVISTNIAETSLTLEGIVYVVDSGFSKQRFYNPISDIENLVVAPISKASARQRAGRAGRV-RPGKCYRLY 406 (660)
Q Consensus 328 ~~~f~~g~~~vlvaT~i~e~Gidip~v~~VId~g~~k~~~~~~~~~~~~l~~~~~s~~~~~QR~GRaGR~-~~G~~~~l~ 406 (660)
++.|++|+..||||||+|++|+|||+|++||++++ |-+..+|+||+||+||. +.|.+|.++
T Consensus 384 L~~FreG~~~vLVATdVAaRGLDi~dV~lVInydf------------------P~~vEdYVHRiGRTGRa~~~G~A~tff 445 (519)
T KOG0331|consen 384 LKGFREGKSPVLVATDVAARGLDVPDVDLVINYDF------------------PNNVEDYVHRIGRTGRAGKKGTAITFF 445 (519)
T ss_pred HHhcccCCcceEEEcccccccCCCccccEEEeCCC------------------CCCHHHHHhhcCccccCCCCceEEEEE
Confidence 99999999999999999999999999999999877 88899999999999997 899999999
Q ss_pred ChHHhhh
Q 006122 407 TEEYFVK 413 (660)
Q Consensus 407 ~~~~~~~ 413 (660)
+...+..
T Consensus 446 t~~~~~~ 452 (519)
T KOG0331|consen 446 TSDNAKL 452 (519)
T ss_pred eHHHHHH
Confidence 9887654
No 19
>PRK11776 ATP-dependent RNA helicase DbpA; Provisional
Probab=100.00 E-value=1.2e-40 Score=364.27 Aligned_cols=337 Identities=18% Similarity=0.185 Sum_probs=247.2
Q ss_pred ccCCCCCCCccchHhHHHHhcCCCcHHHHHHHHHHHhcCCEEEEEcCCCCcHHH--HHHHHHHhccccCCCeEEEEeCch
Q 006122 27 SSLSSASSIGYGYASIEKQRQRLPVYKYRTAILYLVETHATTIIVGETGSGKTT--QIPQYLKEAGWADGGRVIACTQPR 104 (660)
Q Consensus 27 ~~~~~~~~~~~~~~~~~~~~~~lPi~~~~~~i~~~l~~~~~vii~apTGsGKT~--~ip~~l~~~~~~~~~~~i~v~p~r 104 (660)
.+|..++++......+.+....-|. +.|.+++..+.++++++++||||||||+ .+|.+-.........++++++|+|
T Consensus 4 ~~f~~l~l~~~l~~~l~~~g~~~~t-~iQ~~ai~~~l~g~dvi~~a~TGsGKT~a~~lpil~~l~~~~~~~~~lil~Ptr 82 (460)
T PRK11776 4 TAFSTLPLPPALLANLNELGYTEMT-PIQAQSLPAILAGKDVIAQAKTGSGKTAAFGLGLLQKLDVKRFRVQALVLCPTR 82 (460)
T ss_pred CChhhcCCCHHHHHHHHHCCCCCCC-HHHHHHHHHHhcCCCEEEECCCCCcHHHHHHHHHHHHhhhccCCceEEEEeCCH
Confidence 4699999998888777665444444 5677778888889999999999999994 455433222111234689999999
Q ss_pred HHHHHHH--HHHHHHHh-CCeeeeEEeeeee-ccccCCCCCceEEEechHHHHHHHhcCCC-CCCCcEEEEeCCCcCCcC
Q 006122 105 RLAVQAV--ASRVAEEM-GVKVGEEVGYTIR-FEDFTNKDLTAIKFLTDGVLLREMMDDPL-LTKYSVIMVDEAHERSIS 179 (660)
Q Consensus 105 ~la~~~~--~~~~~~~~-~~~~~~~vg~~~~-~~~~~~~~~~~I~v~T~~~ll~~l~~~~~-l~~~~~iIiDE~Her~~~ 179 (660)
+|+.|.. .+++.... +..+....|.... .+.......++|+|+||+.+.+.+..... +.++++||+|||| +.++
T Consensus 83 eLa~Q~~~~~~~~~~~~~~~~v~~~~Gg~~~~~~~~~l~~~~~IvV~Tp~rl~~~l~~~~~~l~~l~~lViDEad-~~l~ 161 (460)
T PRK11776 83 ELADQVAKEIRRLARFIPNIKVLTLCGGVPMGPQIDSLEHGAHIIVGTPGRILDHLRKGTLDLDALNTLVLDEAD-RMLD 161 (460)
T ss_pred HHHHHHHHHHHHHHhhCCCcEEEEEECCCChHHHHHHhcCCCCEEEEChHHHHHHHHcCCccHHHCCEEEEECHH-HHhC
Confidence 9987632 23333333 5666666663211 11111122689999999999999876554 8999999999999 5666
Q ss_pred hhHHHHHHHHHHHhcCCceEEEeecccch--HHHHHHhhcCCCCCCCcccccCCCCCCeEEEECC--ccccceEEecCCC
Q 006122 180 TDILLGLLKKIQRCRSDLRLIISSATIEA--KSMSAFFHARKGRRGLEGVELVPRLEPAILSVEG--RGFNVQIHYVEEP 255 (660)
Q Consensus 180 ~d~ll~~l~~~~~~~~~~kii~~SAT~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~v~~~~~~~~ 255 (660)
..+...+...+....++.+++++|||++. ..+...+...+. .+.+.. ....++.+|....
T Consensus 162 ~g~~~~l~~i~~~~~~~~q~ll~SAT~~~~~~~l~~~~~~~~~----------------~i~~~~~~~~~~i~~~~~~~~ 225 (460)
T PRK11776 162 MGFQDAIDAIIRQAPARRQTLLFSATYPEGIAAISQRFQRDPV----------------EVKVESTHDLPAIEQRFYEVS 225 (460)
T ss_pred cCcHHHHHHHHHhCCcccEEEEEEecCcHHHHHHHHHhcCCCE----------------EEEECcCCCCCCeeEEEEEeC
Confidence 66666665556566778899999999943 455554443331 222222 1222444454443
Q ss_pred chhHHHHHHHHHHHHHhcCCCCcEEEEcCCHHHHHHHHHHHHHHhhhccCCCCCeEEEEccCCCCHHHHhhhcCCCCCCC
Q 006122 256 VSDYVQAAVSTVLLIHDKEPPGDILVFLTGQDDIDATIQLLTEEARTSKKNSSGLIILPLYSGLSRAEQEQVFSPTPRGK 335 (660)
Q Consensus 256 ~~~~~~~~~~~~~~~~~~~~~~~iLVF~~~~~~i~~l~~~L~~~~~~~~~~~~~~~v~~lh~~l~~~~r~~v~~~f~~g~ 335 (660)
..+. ...+..+.....++++||||+++++++.+++.|.+. ++.+..+||+|++.+|..+++.|++|.
T Consensus 226 ~~~k----~~~l~~ll~~~~~~~~lVF~~t~~~~~~l~~~L~~~---------~~~v~~~hg~~~~~eR~~~l~~F~~g~ 292 (460)
T PRK11776 226 PDER----LPALQRLLLHHQPESCVVFCNTKKECQEVADALNAQ---------GFSALALHGDLEQRDRDQVLVRFANRS 292 (460)
T ss_pred cHHH----HHHHHHHHHhcCCCceEEEECCHHHHHHHHHHHHhC---------CCcEEEEeCCCCHHHHHHHHHHHHcCC
Confidence 3332 233334444456678999999999999999999875 788999999999999999999999999
Q ss_pred cEEEEeCCCcccccCCCCeEEEEeCCCccceeecCCCCcccceeeecCHHhHHHhhcccCCC-CCcEEEEccChHHhh
Q 006122 336 RKVVISTNIAETSLTLEGIVYVVDSGFSKQRFYNPISDIENLVVAPISKASARQRAGRAGRV-RPGKCYRLYTEEYFV 412 (660)
Q Consensus 336 ~~vlvaT~i~e~Gidip~v~~VId~g~~k~~~~~~~~~~~~l~~~~~s~~~~~QR~GRaGR~-~~G~~~~l~~~~~~~ 412 (660)
.+|||||+++++|||+|++++||++|+ |.+..+|+||+||+||. +.|.||.++++++..
T Consensus 293 ~~vLVaTdv~~rGiDi~~v~~VI~~d~------------------p~~~~~yiqR~GRtGR~g~~G~ai~l~~~~e~~ 352 (460)
T PRK11776 293 CSVLVATDVAARGLDIKALEAVINYEL------------------ARDPEVHVHRIGRTGRAGSKGLALSLVAPEEMQ 352 (460)
T ss_pred CcEEEEecccccccchhcCCeEEEecC------------------CCCHhHhhhhcccccCCCCcceEEEEEchhHHH
Confidence 999999999999999999999999888 88899999999999999 789999999987543
No 20
>PTZ00110 helicase; Provisional
Probab=100.00 E-value=4.3e-40 Score=363.53 Aligned_cols=339 Identities=20% Similarity=0.234 Sum_probs=242.0
Q ss_pred ccCCCCCCCccchHhHHHHhcCCCcHHHHHHHHHHHhcCCEEEEEcCCCCcHH--HHHHHHHHhcc-----ccCCCeEEE
Q 006122 27 SSLSSASSIGYGYASIEKQRQRLPVYKYRTAILYLVETHATTIIVGETGSGKT--TQIPQYLKEAG-----WADGGRVIA 99 (660)
Q Consensus 27 ~~~~~~~~~~~~~~~~~~~~~~lPi~~~~~~i~~~l~~~~~vii~apTGsGKT--~~ip~~l~~~~-----~~~~~~~i~ 99 (660)
.+|..+++.+.....+.+....-|.. .|.+.+..+.+++++|++|||||||| +++|.+..... ...+..+|+
T Consensus 130 ~~f~~~~l~~~l~~~l~~~g~~~pt~-iQ~~aip~~l~G~dvI~~ApTGSGKTlaylLP~l~~i~~~~~~~~~~gp~~LI 208 (545)
T PTZ00110 130 VSFEYTSFPDYILKSLKNAGFTEPTP-IQVQGWPIALSGRDMIGIAETGSGKTLAFLLPAIVHINAQPLLRYGDGPIVLV 208 (545)
T ss_pred CCHhhcCCCHHHHHHHHHCCCCCCCH-HHHHHHHHHhcCCCEEEEeCCCChHHHHHHHHHHHHHHhcccccCCCCcEEEE
Confidence 46888888888777777665555654 55556666777888999999999999 67786654321 112456899
Q ss_pred EeCchHHHHH--HHHHHHHHHhCCeeeeEEeeeeecc-ccCCCCCceEEEechHHHHHHHhcCCC-CCCCcEEEEeCCCc
Q 006122 100 CTQPRRLAVQ--AVASRVAEEMGVKVGEEVGYTIRFE-DFTNKDLTAIKFLTDGVLLREMMDDPL-LTKYSVIMVDEAHE 175 (660)
Q Consensus 100 v~p~r~la~~--~~~~~~~~~~~~~~~~~vg~~~~~~-~~~~~~~~~I~v~T~~~ll~~l~~~~~-l~~~~~iIiDE~He 175 (660)
++|+|+|+.| ..++.+....+..+....|...... ........+|+|+||++|++.+..... +.++++|||||||
T Consensus 209 L~PTreLa~Qi~~~~~~~~~~~~i~~~~~~gg~~~~~q~~~l~~~~~IlVaTPgrL~d~l~~~~~~l~~v~~lViDEAd- 287 (545)
T PTZ00110 209 LAPTRELAEQIREQCNKFGASSKIRNTVAYGGVPKRGQIYALRRGVEILIACPGRLIDFLESNVTNLRRVTYLVLDEAD- 287 (545)
T ss_pred ECChHHHHHHHHHHHHHHhcccCccEEEEeCCCCHHHHHHHHHcCCCEEEECHHHHHHHHHcCCCChhhCcEEEeehHH-
Confidence 9999999987 3334444444455544554321111 111112579999999999999876654 8999999999999
Q ss_pred CCcChhHHHHHHHHHHHhcCCceEEEeecccch--HHHHHHhhc-CCCCCCCcccccCCCCCCeEEEECCc----cccce
Q 006122 176 RSISTDILLGLLKKIQRCRSDLRLIISSATIEA--KSMSAFFHA-RKGRRGLEGVELVPRLEPAILSVEGR----GFNVQ 248 (660)
Q Consensus 176 r~~~~d~ll~~l~~~~~~~~~~kii~~SAT~~~--~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~v~ 248 (660)
+.++.++...+.+.+...+++.+++++|||++. ..+.+.+.. .+. .+.+... ...++
T Consensus 288 ~mld~gf~~~i~~il~~~~~~~q~l~~SAT~p~~v~~l~~~l~~~~~v----------------~i~vg~~~l~~~~~i~ 351 (545)
T PTZ00110 288 RMLDMGFEPQIRKIVSQIRPDRQTLMWSATWPKEVQSLARDLCKEEPV----------------HVNVGSLDLTACHNIK 351 (545)
T ss_pred hhhhcchHHHHHHHHHhCCCCCeEEEEEeCCCHHHHHHHHHHhccCCE----------------EEEECCCccccCCCee
Confidence 677777777766666667789999999999943 445544432 221 1111110 01122
Q ss_pred EEecCCCchhHHHHHHHHHHHHHhcCCCCcEEEEcCCHHHHHHHHHHHHHHhhhccCCCCCeEEEEccCCCCHHHHhhhc
Q 006122 249 IHYVEEPVSDYVQAAVSTVLLIHDKEPPGDILVFLTGQDDIDATIQLLTEEARTSKKNSSGLIILPLYSGLSRAEQEQVF 328 (660)
Q Consensus 249 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iLVF~~~~~~i~~l~~~L~~~~~~~~~~~~~~~v~~lh~~l~~~~r~~v~ 328 (660)
..+......+....+.. ++.... ...+++||||+++++++.+++.|... ++.+..+||++++++|..++
T Consensus 352 q~~~~~~~~~k~~~L~~-ll~~~~-~~~~k~LIF~~t~~~a~~l~~~L~~~---------g~~~~~ihg~~~~~eR~~il 420 (545)
T PTZ00110 352 QEVFVVEEHEKRGKLKM-LLQRIM-RDGDKILIFVETKKGADFLTKELRLD---------GWPALCIHGDKKQEERTWVL 420 (545)
T ss_pred EEEEEEechhHHHHHHH-HHHHhc-ccCCeEEEEecChHHHHHHHHHHHHc---------CCcEEEEECCCcHHHHHHHH
Confidence 21111111111122222 222111 15678999999999999999999764 67889999999999999999
Q ss_pred CCCCCCCcEEEEeCCCcccccCCCCeEEEEeCCCccceeecCCCCcccceeeecCHHhHHHhhcccCCC-CCcEEEEccC
Q 006122 329 SPTPRGKRKVVISTNIAETSLTLEGIVYVVDSGFSKQRFYNPISDIENLVVAPISKASARQRAGRAGRV-RPGKCYRLYT 407 (660)
Q Consensus 329 ~~f~~g~~~vlvaT~i~e~Gidip~v~~VId~g~~k~~~~~~~~~~~~l~~~~~s~~~~~QR~GRaGR~-~~G~~~~l~~ 407 (660)
+.|++|+.+|||||+++++|||||+|++||++++ |.+..+|+||+||+||. ..|.||.+++
T Consensus 421 ~~F~~G~~~ILVaTdv~~rGIDi~~v~~VI~~d~------------------P~s~~~yvqRiGRtGR~G~~G~ai~~~~ 482 (545)
T PTZ00110 421 NEFKTGKSPIMIATDVASRGLDVKDVKYVINFDF------------------PNQIEDYVHRIGRTGRAGAKGASYTFLT 482 (545)
T ss_pred HHHhcCCCcEEEEcchhhcCCCcccCCEEEEeCC------------------CCCHHHHHHHhcccccCCCCceEEEEEC
Confidence 9999999999999999999999999999999887 88999999999999999 8899999999
Q ss_pred hHHhh
Q 006122 408 EEYFV 412 (660)
Q Consensus 408 ~~~~~ 412 (660)
+++..
T Consensus 483 ~~~~~ 487 (545)
T PTZ00110 483 PDKYR 487 (545)
T ss_pred cchHH
Confidence 87543
No 21
>PRK10590 ATP-dependent RNA helicase RhlE; Provisional
Probab=100.00 E-value=1.5e-39 Score=354.01 Aligned_cols=336 Identities=18% Similarity=0.193 Sum_probs=241.3
Q ss_pred cCCCCCCCccchHhHHHHhcCCCcHHHHHHHHHHHhcCCEEEEEcCCCCcHH--HHHHHHHHhccc------cCCCeEEE
Q 006122 28 SLSSASSIGYGYASIEKQRQRLPVYKYRTAILYLVETHATTIIVGETGSGKT--TQIPQYLKEAGW------ADGGRVIA 99 (660)
Q Consensus 28 ~~~~~~~~~~~~~~~~~~~~~lPi~~~~~~i~~~l~~~~~vii~apTGsGKT--~~ip~~l~~~~~------~~~~~~i~ 99 (660)
+|.+++++......+.+....-|. +.|.+++..+.++++++++|||||||| +++|.+...... ....++++
T Consensus 2 ~f~~l~l~~~l~~~l~~~g~~~pt-~iQ~~ai~~il~g~dvlv~apTGsGKTla~~lpil~~l~~~~~~~~~~~~~~aLi 80 (456)
T PRK10590 2 SFDSLGLSPDILRAVAEQGYREPT-PIQQQAIPAVLEGRDLMASAQTGTGKTAGFTLPLLQHLITRQPHAKGRRPVRALI 80 (456)
T ss_pred CHHHcCCCHHHHHHHHHCCCCCCC-HHHHHHHHHHhCCCCEEEECCCCCcHHHHHHHHHHHHhhhcccccccCCCceEEE
Confidence 588899999888888776666665 556666677778889999999999999 566654332111 01235899
Q ss_pred EeCchHHHHHHH--HHHHHHHhCCeeeeEEeeeeec-cccCCCCCceEEEechHHHHHHHhcCCC-CCCCcEEEEeCCCc
Q 006122 100 CTQPRRLAVQAV--ASRVAEEMGVKVGEEVGYTIRF-EDFTNKDLTAIKFLTDGVLLREMMDDPL-LTKYSVIMVDEAHE 175 (660)
Q Consensus 100 v~p~r~la~~~~--~~~~~~~~~~~~~~~vg~~~~~-~~~~~~~~~~I~v~T~~~ll~~l~~~~~-l~~~~~iIiDE~He 175 (660)
++|+|+|+.|.. .+.+.+..+......+|..... +........+|+|+||+.|+..+..... +.++++|||||||
T Consensus 81 l~PtreLa~Qi~~~~~~~~~~~~~~~~~~~gg~~~~~~~~~l~~~~~IiV~TP~rL~~~~~~~~~~l~~v~~lViDEah- 159 (456)
T PRK10590 81 LTPTRELAAQIGENVRDYSKYLNIRSLVVFGGVSINPQMMKLRGGVDVLVATPGRLLDLEHQNAVKLDQVEILVLDEAD- 159 (456)
T ss_pred EeCcHHHHHHHHHHHHHHhccCCCEEEEEECCcCHHHHHHHHcCCCcEEEEChHHHHHHHHcCCcccccceEEEeecHH-
Confidence 999999998733 3334445566655555532111 1111122689999999999998876654 8999999999999
Q ss_pred CCcChhHHHHHHHHHHHhcCCceEEEeecccch--HHHHHHhhcCCCCCCCcccccCCCCCCeEEEECCcc---ccceEE
Q 006122 176 RSISTDILLGLLKKIQRCRSDLRLIISSATIEA--KSMSAFFHARKGRRGLEGVELVPRLEPAILSVEGRG---FNVQIH 250 (660)
Q Consensus 176 r~~~~d~ll~~l~~~~~~~~~~kii~~SAT~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~v~~~ 250 (660)
+.++..+...+...+.......+++++|||++. ..+...+...+. .+.+..+. ..+..+
T Consensus 160 ~ll~~~~~~~i~~il~~l~~~~q~l~~SAT~~~~~~~l~~~~~~~~~----------------~i~~~~~~~~~~~i~~~ 223 (456)
T PRK10590 160 RMLDMGFIHDIRRVLAKLPAKRQNLLFSATFSDDIKALAEKLLHNPL----------------EIEVARRNTASEQVTQH 223 (456)
T ss_pred HHhccccHHHHHHHHHhCCccCeEEEEeCCCcHHHHHHHHHHcCCCe----------------EEEEecccccccceeEE
Confidence 566666655555555556677889999999954 455544433321 22221111 112222
Q ss_pred ecCCCchhHHHHHHHHHHHHHhcCCCCcEEEEcCCHHHHHHHHHHHHHHhhhccCCCCCeEEEEccCCCCHHHHhhhcCC
Q 006122 251 YVEEPVSDYVQAAVSTVLLIHDKEPPGDILVFLTGQDDIDATIQLLTEEARTSKKNSSGLIILPLYSGLSRAEQEQVFSP 330 (660)
Q Consensus 251 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~iLVF~~~~~~i~~l~~~L~~~~~~~~~~~~~~~v~~lh~~l~~~~r~~v~~~ 330 (660)
+....... ....+..+.......++||||+++.+++.+++.|.+. ++.+..+||++++++|.++++.
T Consensus 224 ~~~~~~~~----k~~~l~~l~~~~~~~~~lVF~~t~~~~~~l~~~L~~~---------g~~~~~lhg~~~~~~R~~~l~~ 290 (456)
T PRK10590 224 VHFVDKKR----KRELLSQMIGKGNWQQVLVFTRTKHGANHLAEQLNKD---------GIRSAAIHGNKSQGARTRALAD 290 (456)
T ss_pred EEEcCHHH----HHHHHHHHHHcCCCCcEEEEcCcHHHHHHHHHHHHHC---------CCCEEEEECCCCHHHHHHHHHH
Confidence 22111111 1222333344455678999999999999999999765 7889999999999999999999
Q ss_pred CCCCCcEEEEeCCCcccccCCCCeEEEEeCCCccceeecCCCCcccceeeecCHHhHHHhhcccCCC-CCcEEEEccChH
Q 006122 331 TPRGKRKVVISTNIAETSLTLEGIVYVVDSGFSKQRFYNPISDIENLVVAPISKASARQRAGRAGRV-RPGKCYRLYTEE 409 (660)
Q Consensus 331 f~~g~~~vlvaT~i~e~Gidip~v~~VId~g~~k~~~~~~~~~~~~l~~~~~s~~~~~QR~GRaGR~-~~G~~~~l~~~~ 409 (660)
|++|+.+|||||+++++|||+|+|++||++++ |.+..+|+||+|||||. ..|.++.+++.+
T Consensus 291 F~~g~~~iLVaTdv~~rGiDip~v~~VI~~~~------------------P~~~~~yvqR~GRaGR~g~~G~ai~l~~~~ 352 (456)
T PRK10590 291 FKSGDIRVLVATDIAARGLDIEELPHVVNYEL------------------PNVPEDYVHRIGRTGRAAATGEALSLVCVD 352 (456)
T ss_pred HHcCCCcEEEEccHHhcCCCcccCCEEEEeCC------------------CCCHHHhhhhccccccCCCCeeEEEEecHH
Confidence 99999999999999999999999999999887 88899999999999998 789999999876
Q ss_pred Hhh
Q 006122 410 YFV 412 (660)
Q Consensus 410 ~~~ 412 (660)
+..
T Consensus 353 d~~ 355 (456)
T PRK10590 353 EHK 355 (456)
T ss_pred HHH
Confidence 543
No 22
>COG0513 SrmB Superfamily II DNA and RNA helicases [DNA replication, recombination, and repair / Transcription / Translation, ribosomal structure and biogenesis]
Probab=100.00 E-value=1.9e-39 Score=354.95 Aligned_cols=335 Identities=20% Similarity=0.281 Sum_probs=265.7
Q ss_pred ccccCCCCCCCccchHhHHHHhcCCCcHHHHHHHHHHHhcCCEEEEEcCCCCcHH--HHHHHHHHhcc-ccCCCe-EEEE
Q 006122 25 LSSSLSSASSIGYGYASIEKQRQRLPVYKYRTAILYLVETHATTIIVGETGSGKT--TQIPQYLKEAG-WADGGR-VIAC 100 (660)
Q Consensus 25 ~~~~~~~~~~~~~~~~~~~~~~~~lPi~~~~~~i~~~l~~~~~vii~apTGsGKT--~~ip~~l~~~~-~~~~~~-~i~v 100 (660)
.+.+|.+++++......+.+....-|...|+..|...+.+ +++++.|+|||||| |.+|.+-.... ...... ++++
T Consensus 27 ~~~~F~~l~l~~~ll~~l~~~gf~~pt~IQ~~~IP~~l~g-~Dvi~~A~TGsGKT~Af~lP~l~~l~~~~~~~~~~aLil 105 (513)
T COG0513 27 TPPEFASLGLSPELLQALKDLGFEEPTPIQLAAIPLILAG-RDVLGQAQTGTGKTAAFLLPLLQKILKSVERKYVSALIL 105 (513)
T ss_pred ccCCHhhcCCCHHHHHHHHHcCCCCCCHHHHHHHHHHhCC-CCEEEECCCCChHHHHHHHHHHHHHhcccccCCCceEEE
Confidence 3357999999999999999888888888888777776655 77999999999999 88887655331 112222 8999
Q ss_pred eCchHHHHH--HHHHHHHHHh-CCeeeeEEeeee-ecc-ccCCCCCceEEEechHHHHHHHhcCCC-CCCCcEEEEeCCC
Q 006122 101 TQPRRLAVQ--AVASRVAEEM-GVKVGEEVGYTI-RFE-DFTNKDLTAIKFLTDGVLLREMMDDPL-LTKYSVIMVDEAH 174 (660)
Q Consensus 101 ~p~r~la~~--~~~~~~~~~~-~~~~~~~vg~~~-~~~-~~~~~~~~~I~v~T~~~ll~~l~~~~~-l~~~~~iIiDE~H 174 (660)
+|+|+||.| ..+..+.... +..+...+|... ... ..... ..+|+|+|||++++++....+ +.++.++|+|||+
T Consensus 106 ~PTRELA~Qi~~~~~~~~~~~~~~~~~~i~GG~~~~~q~~~l~~-~~~ivVaTPGRllD~i~~~~l~l~~v~~lVlDEAD 184 (513)
T COG0513 106 APTRELAVQIAEELRKLGKNLGGLRVAVVYGGVSIRKQIEALKR-GVDIVVATPGRLLDLIKRGKLDLSGVETLVLDEAD 184 (513)
T ss_pred CCCHHHHHHHHHHHHHHHhhcCCccEEEEECCCCHHHHHHHHhc-CCCEEEECccHHHHHHHcCCcchhhcCEEEeccHh
Confidence 999999998 6677777777 677777777432 111 11222 499999999999999987754 9999999999999
Q ss_pred cCCcChhHHHHHHHHHHHhcCCceEEEeecccchHHHHHH---hhcCCCCCCCcccccCCCCCCeEEEEC--C---cccc
Q 006122 175 ERSISTDILLGLLKKIQRCRSDLRLIISSATIEAKSMSAF---FHARKGRRGLEGVELVPRLEPAILSVE--G---RGFN 246 (660)
Q Consensus 175 er~~~~d~ll~~l~~~~~~~~~~kii~~SAT~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~--~---~~~~ 246 (660)
|.++.+|...+.+.+....++.+++++|||++. .+.++ +...+. .+.+. . ....
T Consensus 185 -rmLd~Gf~~~i~~I~~~~p~~~qtllfSAT~~~-~i~~l~~~~l~~p~----------------~i~v~~~~~~~~~~~ 246 (513)
T COG0513 185 -RMLDMGFIDDIEKILKALPPDRQTLLFSATMPD-DIRELARRYLNDPV----------------EIEVSVEKLERTLKK 246 (513)
T ss_pred -hhhcCCCHHHHHHHHHhCCcccEEEEEecCCCH-HHHHHHHHHccCCc----------------EEEEccccccccccC
Confidence 899999998888888888889999999999955 24333 222221 33333 1 1234
Q ss_pred ceEEecCCCchhHHHHHHHHHHHHHhcCCCCcEEEEcCCHHHHHHHHHHHHHHhhhccCCCCCeEEEEccCCCCHHHHhh
Q 006122 247 VQIHYVEEPVSDYVQAAVSTVLLIHDKEPPGDILVFLTGQDDIDATIQLLTEEARTSKKNSSGLIILPLYSGLSRAEQEQ 326 (660)
Q Consensus 247 v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iLVF~~~~~~i~~l~~~L~~~~~~~~~~~~~~~v~~lh~~l~~~~r~~ 326 (660)
++.+|......+ .....+..+......+++||||+++..++.++..|... ++.+..+||+|++++|.+
T Consensus 247 i~q~~~~v~~~~---~k~~~L~~ll~~~~~~~~IVF~~tk~~~~~l~~~l~~~---------g~~~~~lhG~l~q~~R~~ 314 (513)
T COG0513 247 IKQFYLEVESEE---EKLELLLKLLKDEDEGRVIVFVRTKRLVEELAESLRKR---------GFKVAALHGDLPQEERDR 314 (513)
T ss_pred ceEEEEEeCCHH---HHHHHHHHHHhcCCCCeEEEEeCcHHHHHHHHHHHHHC---------CCeEEEecCCCCHHHHHH
Confidence 556665554433 23455555566666668999999999999999999876 799999999999999999
Q ss_pred hcCCCCCCCcEEEEeCCCcccccCCCCeEEEEeCCCccceeecCCCCcccceeeecCHHhHHHhhcccCCC-CCcEEEEc
Q 006122 327 VFSPTPRGKRKVVISTNIAETSLTLEGIVYVVDSGFSKQRFYNPISDIENLVVAPISKASARQRAGRAGRV-RPGKCYRL 405 (660)
Q Consensus 327 v~~~f~~g~~~vlvaT~i~e~Gidip~v~~VId~g~~k~~~~~~~~~~~~l~~~~~s~~~~~QR~GRaGR~-~~G~~~~l 405 (660)
+++.|++|..+||||||++++|||||+|.+||++++ |.+..+|.||+||+||. ..|.++.+
T Consensus 315 ~l~~F~~g~~~vLVaTDvaaRGiDi~~v~~VinyD~------------------p~~~e~yvHRiGRTgRaG~~G~ai~f 376 (513)
T COG0513 315 ALEKFKDGELRVLVATDVAARGLDIPDVSHVINYDL------------------PLDPEDYVHRIGRTGRAGRKGVAISF 376 (513)
T ss_pred HHHHHHcCCCCEEEEechhhccCCccccceeEEccC------------------CCCHHHheeccCccccCCCCCeEEEE
Confidence 999999999999999999999999999999999777 78888999999999999 89999999
Q ss_pred cChH
Q 006122 406 YTEE 409 (660)
Q Consensus 406 ~~~~ 409 (660)
+++.
T Consensus 377 v~~~ 380 (513)
T COG0513 377 VTEE 380 (513)
T ss_pred eCcH
Confidence 9864
No 23
>PRK04837 ATP-dependent RNA helicase RhlB; Provisional
Probab=100.00 E-value=1.5e-39 Score=351.80 Aligned_cols=336 Identities=18% Similarity=0.208 Sum_probs=239.5
Q ss_pred cccCCCCCCCccchHhHHHHhcCCCcHHHHHHHHHHHhcCCEEEEEcCCCCcHH--HHHHHHHHh--ccc-----cCCCe
Q 006122 26 SSSLSSASSIGYGYASIEKQRQRLPVYKYRTAILYLVETHATTIIVGETGSGKT--TQIPQYLKE--AGW-----ADGGR 96 (660)
Q Consensus 26 ~~~~~~~~~~~~~~~~~~~~~~~lPi~~~~~~i~~~l~~~~~vii~apTGsGKT--~~ip~~l~~--~~~-----~~~~~ 96 (660)
..+|.+++++......+.+....-|.. .|.+++..+.++++++++|||||||| +++|.+..- ... ..+.+
T Consensus 7 ~~~f~~~~l~~~l~~~l~~~g~~~pt~-iQ~~aip~il~g~dvi~~ApTGsGKTla~llp~l~~l~~~~~~~~~~~~~~~ 85 (423)
T PRK04837 7 EQKFSDFALHPQVVEALEKKGFHNCTP-IQALALPLTLAGRDVAGQAQTGTGKTMAFLTATFHYLLSHPAPEDRKVNQPR 85 (423)
T ss_pred CCCHhhCCCCHHHHHHHHHCCCCCCCH-HHHHHHHHHhCCCcEEEECCCCchHHHHHHHHHHHHHHhcccccccccCCce
Confidence 457999999999888887776666665 45555666778888999999999999 556654221 111 12356
Q ss_pred EEEEeCchHHHHHH--HHHHHHHHhCCeeeeEEeeeee-ccccCCCCCceEEEechHHHHHHHhcCCC-CCCCcEEEEeC
Q 006122 97 VIACTQPRRLAVQA--VASRVAEEMGVKVGEEVGYTIR-FEDFTNKDLTAIKFLTDGVLLREMMDDPL-LTKYSVIMVDE 172 (660)
Q Consensus 97 ~i~v~p~r~la~~~--~~~~~~~~~~~~~~~~vg~~~~-~~~~~~~~~~~I~v~T~~~ll~~l~~~~~-l~~~~~iIiDE 172 (660)
+++++|+|+|+.|. ....+....+..++...|.... .+........+|+|+||+.|++.+..... +.++++|||||
T Consensus 86 ~lil~PtreLa~Qi~~~~~~l~~~~~~~v~~~~gg~~~~~~~~~l~~~~~IlV~TP~~l~~~l~~~~~~l~~v~~lViDE 165 (423)
T PRK04837 86 ALIMAPTRELAVQIHADAEPLAQATGLKLGLAYGGDGYDKQLKVLESGVDILIGTTGRLIDYAKQNHINLGAIQVVVLDE 165 (423)
T ss_pred EEEECCcHHHHHHHHHHHHHHhccCCceEEEEECCCCHHHHHHHhcCCCCEEEECHHHHHHHHHcCCcccccccEEEEec
Confidence 89999999999984 4556667777877777663211 11111122579999999999999876554 89999999999
Q ss_pred CCcCCcChhHHHHHHHHHHHhc--CCceEEEeecccchH--HHH-HHhhcCCCCCCCcccccCCCCCCeEEEECCcc---
Q 006122 173 AHERSISTDILLGLLKKIQRCR--SDLRLIISSATIEAK--SMS-AFFHARKGRRGLEGVELVPRLEPAILSVEGRG--- 244 (660)
Q Consensus 173 ~Her~~~~d~ll~~l~~~~~~~--~~~kii~~SAT~~~~--~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--- 244 (660)
|| +.++.++...+...+.... ...+.+++|||++.. .+. .++.... .+.+....
T Consensus 166 ad-~l~~~~f~~~i~~i~~~~~~~~~~~~~l~SAT~~~~~~~~~~~~~~~p~-----------------~i~v~~~~~~~ 227 (423)
T PRK04837 166 AD-RMFDLGFIKDIRWLFRRMPPANQRLNMLFSATLSYRVRELAFEHMNNPE-----------------YVEVEPEQKTG 227 (423)
T ss_pred HH-HHhhcccHHHHHHHHHhCCCccceeEEEEeccCCHHHHHHHHHHCCCCE-----------------EEEEcCCCcCC
Confidence 99 4555555444433333332 245578999999543 222 2332211 22222111
Q ss_pred ccceEEecCCCchhHHHHHHHHHHHHHhcCCCCcEEEEcCCHHHHHHHHHHHHHHhhhccCCCCCeEEEEccCCCCHHHH
Q 006122 245 FNVQIHYVEEPVSDYVQAAVSTVLLIHDKEPPGDILVFLTGQDDIDATIQLLTEEARTSKKNSSGLIILPLYSGLSRAEQ 324 (660)
Q Consensus 245 ~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iLVF~~~~~~i~~l~~~L~~~~~~~~~~~~~~~v~~lh~~l~~~~r 324 (660)
..+...+......+ ....+..+......+++||||++++.++.+++.|.+. ++.+..+||++++++|
T Consensus 228 ~~i~~~~~~~~~~~----k~~~l~~ll~~~~~~~~lVF~~t~~~~~~l~~~L~~~---------g~~v~~lhg~~~~~~R 294 (423)
T PRK04837 228 HRIKEELFYPSNEE----KMRLLQTLIEEEWPDRAIIFANTKHRCEEIWGHLAAD---------GHRVGLLTGDVAQKKR 294 (423)
T ss_pred CceeEEEEeCCHHH----HHHHHHHHHHhcCCCeEEEEECCHHHHHHHHHHHHhC---------CCcEEEecCCCChhHH
Confidence 11222222111112 2233333444445678999999999999999999765 7889999999999999
Q ss_pred hhhcCCCCCCCcEEEEeCCCcccccCCCCeEEEEeCCCccceeecCCCCcccceeeecCHHhHHHhhcccCCC-CCcEEE
Q 006122 325 EQVFSPTPRGKRKVVISTNIAETSLTLEGIVYVVDSGFSKQRFYNPISDIENLVVAPISKASARQRAGRAGRV-RPGKCY 403 (660)
Q Consensus 325 ~~v~~~f~~g~~~vlvaT~i~e~Gidip~v~~VId~g~~k~~~~~~~~~~~~l~~~~~s~~~~~QR~GRaGR~-~~G~~~ 403 (660)
..+++.|++|+.+|||||+++++|||+|+|++||++++ |.+..+|.||+||+||. +.|.++
T Consensus 295 ~~~l~~F~~g~~~vLVaTdv~~rGiDip~v~~VI~~d~------------------P~s~~~yiqR~GR~gR~G~~G~ai 356 (423)
T PRK04837 295 LRILEEFTRGDLDILVATDVAARGLHIPAVTHVFNYDL------------------PDDCEDYVHRIGRTGRAGASGHSI 356 (423)
T ss_pred HHHHHHHHcCCCcEEEEechhhcCCCccccCEEEEeCC------------------CCchhheEeccccccCCCCCeeEE
Confidence 99999999999999999999999999999999999777 77888899999999999 889999
Q ss_pred EccChHHh
Q 006122 404 RLYTEEYF 411 (660)
Q Consensus 404 ~l~~~~~~ 411 (660)
.++++++.
T Consensus 357 ~~~~~~~~ 364 (423)
T PRK04837 357 SLACEEYA 364 (423)
T ss_pred EEeCHHHH
Confidence 99998754
No 24
>PRK11192 ATP-dependent RNA helicase SrmB; Provisional
Probab=100.00 E-value=3.9e-39 Score=350.15 Aligned_cols=337 Identities=16% Similarity=0.222 Sum_probs=245.9
Q ss_pred cCCCCCCCccchHhHHHHhcCCCcHHHHHHHHHHHhcCCEEEEEcCCCCcHH--HHHHHHHH--hccc--cCCCeEEEEe
Q 006122 28 SLSSASSIGYGYASIEKQRQRLPVYKYRTAILYLVETHATTIIVGETGSGKT--TQIPQYLK--EAGW--ADGGRVIACT 101 (660)
Q Consensus 28 ~~~~~~~~~~~~~~~~~~~~~lPi~~~~~~i~~~l~~~~~vii~apTGsGKT--~~ip~~l~--~~~~--~~~~~~i~v~ 101 (660)
+|..+++.......+.+....-|. ..|.+.+.++..+++++++|||||||| +++|.+-. .... ....++++++
T Consensus 2 ~f~~l~l~~~l~~~l~~~g~~~p~-~iQ~~ai~~~~~g~d~l~~apTGsGKT~~~~lp~l~~l~~~~~~~~~~~~~lil~ 80 (434)
T PRK11192 2 TFSELELDESLLEALQDKGYTRPT-AIQAEAIPPALDGRDVLGSAPTGTGKTAAFLLPALQHLLDFPRRKSGPPRILILT 80 (434)
T ss_pred CHhhcCCCHHHHHHHHHCCCCCCC-HHHHHHHHHHhCCCCEEEECCCCChHHHHHHHHHHHHHhhccccCCCCceEEEEC
Confidence 588888888877777666555554 566666666777888999999999999 45554322 2111 1235689999
Q ss_pred CchHHHHH--HHHHHHHHHhCCeeeeEEeeeeecc--ccCCCCCceEEEechHHHHHHHhcCCC-CCCCcEEEEeCCCcC
Q 006122 102 QPRRLAVQ--AVASRVAEEMGVKVGEEVGYTIRFE--DFTNKDLTAIKFLTDGVLLREMMDDPL-LTKYSVIMVDEAHER 176 (660)
Q Consensus 102 p~r~la~~--~~~~~~~~~~~~~~~~~vg~~~~~~--~~~~~~~~~I~v~T~~~ll~~l~~~~~-l~~~~~iIiDE~Her 176 (660)
|+++|+.| ..+..++...+..++..+|...... ..... +.+|+|+||++|++.+..... +.++++||||||| +
T Consensus 81 Pt~eLa~Q~~~~~~~l~~~~~~~v~~~~gg~~~~~~~~~l~~-~~~IlV~Tp~rl~~~~~~~~~~~~~v~~lViDEah-~ 158 (434)
T PRK11192 81 PTRELAMQVADQARELAKHTHLDIATITGGVAYMNHAEVFSE-NQDIVVATPGRLLQYIKEENFDCRAVETLILDEAD-R 158 (434)
T ss_pred CcHHHHHHHHHHHHHHHccCCcEEEEEECCCCHHHHHHHhcC-CCCEEEEChHHHHHHHHcCCcCcccCCEEEEECHH-H
Confidence 99999987 3455666777888888777332111 11223 679999999999999877665 8999999999999 5
Q ss_pred CcChhHHHHHHHHHHHhcCCceEEEeecccchH---HHHHHhhcCCCCCCCcccccCCCCCCeEEEECCc---cccceEE
Q 006122 177 SISTDILLGLLKKIQRCRSDLRLIISSATIEAK---SMSAFFHARKGRRGLEGVELVPRLEPAILSVEGR---GFNVQIH 250 (660)
Q Consensus 177 ~~~~d~ll~~l~~~~~~~~~~kii~~SAT~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~v~~~ 250 (660)
.++..+...+.......+...+++++|||++.. .+..++...+. .+.+... ...+...
T Consensus 159 ~l~~~~~~~~~~i~~~~~~~~q~~~~SAT~~~~~~~~~~~~~~~~~~----------------~i~~~~~~~~~~~i~~~ 222 (434)
T PRK11192 159 MLDMGFAQDIETIAAETRWRKQTLLFSATLEGDAVQDFAERLLNDPV----------------EVEAEPSRRERKKIHQW 222 (434)
T ss_pred HhCCCcHHHHHHHHHhCccccEEEEEEeecCHHHHHHHHHHHccCCE----------------EEEecCCcccccCceEE
Confidence 666555555544444556678999999999644 44444433321 1222111 1122222
Q ss_pred ecCCCchhHHHHHHHHHHHHHhcCCCCcEEEEcCCHHHHHHHHHHHHHHhhhccCCCCCeEEEEccCCCCHHHHhhhcCC
Q 006122 251 YVEEPVSDYVQAAVSTVLLIHDKEPPGDILVFLTGQDDIDATIQLLTEEARTSKKNSSGLIILPLYSGLSRAEQEQVFSP 330 (660)
Q Consensus 251 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~iLVF~~~~~~i~~l~~~L~~~~~~~~~~~~~~~v~~lh~~l~~~~r~~v~~~ 330 (660)
+..... .......+..+......+++||||+++++++.+++.|.+. ++.+..+||+|++.+|..+++.
T Consensus 223 ~~~~~~---~~~k~~~l~~l~~~~~~~~~lVF~~s~~~~~~l~~~L~~~---------~~~~~~l~g~~~~~~R~~~l~~ 290 (434)
T PRK11192 223 YYRADD---LEHKTALLCHLLKQPEVTRSIVFVRTRERVHELAGWLRKA---------GINCCYLEGEMVQAKRNEAIKR 290 (434)
T ss_pred EEEeCC---HHHHHHHHHHHHhcCCCCeEEEEeCChHHHHHHHHHHHhC---------CCCEEEecCCCCHHHHHHHHHH
Confidence 222211 1122334444445556688999999999999999999764 7889999999999999999999
Q ss_pred CCCCCcEEEEeCCCcccccCCCCeEEEEeCCCccceeecCCCCcccceeeecCHHhHHHhhcccCCC-CCcEEEEccChH
Q 006122 331 TPRGKRKVVISTNIAETSLTLEGIVYVVDSGFSKQRFYNPISDIENLVVAPISKASARQRAGRAGRV-RPGKCYRLYTEE 409 (660)
Q Consensus 331 f~~g~~~vlvaT~i~e~Gidip~v~~VId~g~~k~~~~~~~~~~~~l~~~~~s~~~~~QR~GRaGR~-~~G~~~~l~~~~ 409 (660)
|++|+.+|||||+++++|||+|++++||++++ |.|...|+||+||+||. ..|.++.+++.+
T Consensus 291 f~~G~~~vLVaTd~~~~GiDip~v~~VI~~d~------------------p~s~~~yiqr~GR~gR~g~~g~ai~l~~~~ 352 (434)
T PRK11192 291 LTDGRVNVLVATDVAARGIDIDDVSHVINFDM------------------PRSADTYLHRIGRTGRAGRKGTAISLVEAH 352 (434)
T ss_pred HhCCCCcEEEEccccccCccCCCCCEEEEECC------------------CCCHHHHhhcccccccCCCCceEEEEecHH
Confidence 99999999999999999999999999999777 88999999999999998 789999999877
Q ss_pred Hhhh
Q 006122 410 YFVK 413 (660)
Q Consensus 410 ~~~~ 413 (660)
+...
T Consensus 353 d~~~ 356 (434)
T PRK11192 353 DHLL 356 (434)
T ss_pred HHHH
Confidence 6543
No 25
>PLN00206 DEAD-box ATP-dependent RNA helicase; Provisional
Probab=100.00 E-value=4.6e-39 Score=354.40 Aligned_cols=337 Identities=18% Similarity=0.179 Sum_probs=237.2
Q ss_pred ccCCCCCCCccchHhHHHHhcCCCcHHHHHHHHHHHhcCCEEEEEcCCCCcHH--HHHHHHHHhcc-------ccCCCeE
Q 006122 27 SSLSSASSIGYGYASIEKQRQRLPVYKYRTAILYLVETHATTIIVGETGSGKT--TQIPQYLKEAG-------WADGGRV 97 (660)
Q Consensus 27 ~~~~~~~~~~~~~~~~~~~~~~lPi~~~~~~i~~~l~~~~~vii~apTGsGKT--~~ip~~l~~~~-------~~~~~~~ 97 (660)
.+|..++++......+.+....-|. +.|.+.+..+.++++++++|||||||| +++|.+..... ...+..+
T Consensus 121 ~~f~~~~l~~~l~~~L~~~g~~~pt-piQ~~aip~il~g~dviv~ApTGSGKTlayllPil~~l~~~~~~~~~~~~~~~a 199 (518)
T PLN00206 121 LSFSSCGLPPKLLLNLETAGYEFPT-PIQMQAIPAALSGRSLLVSADTGSGKTASFLVPIISRCCTIRSGHPSEQRNPLA 199 (518)
T ss_pred cCHHhCCCCHHHHHHHHHcCCCCCC-HHHHHHHHHHhcCCCEEEEecCCCCccHHHHHHHHHHHHhhccccccccCCceE
Confidence 3588888888887777665555555 455566667778899999999999999 77776643211 1134578
Q ss_pred EEEeCchHHHHH--HHHHHHHHHhCCeeeeEEeeeeeccc-cCCCCCceEEEechHHHHHHHhcCCC-CCCCcEEEEeCC
Q 006122 98 IACTQPRRLAVQ--AVASRVAEEMGVKVGEEVGYTIRFED-FTNKDLTAIKFLTDGVLLREMMDDPL-LTKYSVIMVDEA 173 (660)
Q Consensus 98 i~v~p~r~la~~--~~~~~~~~~~~~~~~~~vg~~~~~~~-~~~~~~~~I~v~T~~~ll~~l~~~~~-l~~~~~iIiDE~ 173 (660)
++++|+|+|+.| ..++.+.+..+......+|.....+. .......+|+|+|||+|.+.+..... +.++++||||||
T Consensus 200 LIL~PTreLa~Qi~~~~~~l~~~~~~~~~~~~gG~~~~~q~~~l~~~~~IiV~TPgrL~~~l~~~~~~l~~v~~lViDEa 279 (518)
T PLN00206 200 MVLTPTRELCVQVEDQAKVLGKGLPFKTALVVGGDAMPQQLYRIQQGVELIVGTPGRLIDLLSKHDIELDNVSVLVLDEV 279 (518)
T ss_pred EEEeCCHHHHHHHHHHHHHHhCCCCceEEEEECCcchHHHHHHhcCCCCEEEECHHHHHHHHHcCCccchheeEEEeecH
Confidence 999999999976 33344444444454445553221111 11122589999999999998876544 899999999999
Q ss_pred CcCCcChhHHHHHHHHHHHhcCCceEEEeecccc--hHHHHHHhhcCCCCCCCcccccCCCCCCeEEEECCcc---ccce
Q 006122 174 HERSISTDILLGLLKKIQRCRSDLRLIISSATIE--AKSMSAFFHARKGRRGLEGVELVPRLEPAILSVEGRG---FNVQ 248 (660)
Q Consensus 174 Her~~~~d~ll~~l~~~~~~~~~~kii~~SAT~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~v~ 248 (660)
| +.++..+...+.+ +....++.+++++|||++ .+.+..++...+. .+.+.... ..+.
T Consensus 280 d-~ml~~gf~~~i~~-i~~~l~~~q~l~~SATl~~~v~~l~~~~~~~~~----------------~i~~~~~~~~~~~v~ 341 (518)
T PLN00206 280 D-CMLERGFRDQVMQ-IFQALSQPQVLLFSATVSPEVEKFASSLAKDII----------------LISIGNPNRPNKAVK 341 (518)
T ss_pred H-HHhhcchHHHHHH-HHHhCCCCcEEEEEeeCCHHHHHHHHHhCCCCE----------------EEEeCCCCCCCccee
Confidence 9 4555555444333 333446789999999994 4566666654331 22221111 1122
Q ss_pred EEecCCCchhHHHHHHHHHHHHHhc--CCCCcEEEEcCCHHHHHHHHHHHHHHhhhccCCCCCeEEEEccCCCCHHHHhh
Q 006122 249 IHYVEEPVSDYVQAAVSTVLLIHDK--EPPGDILVFLTGQDDIDATIQLLTEEARTSKKNSSGLIILPLYSGLSRAEQEQ 326 (660)
Q Consensus 249 ~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~iLVF~~~~~~i~~l~~~L~~~~~~~~~~~~~~~v~~lh~~l~~~~r~~ 326 (660)
..+......+... .+..+... ...+++||||+++..++.+++.|... .++.+..+||+++.++|..
T Consensus 342 q~~~~~~~~~k~~----~l~~~l~~~~~~~~~~iVFv~s~~~a~~l~~~L~~~--------~g~~~~~~Hg~~~~~eR~~ 409 (518)
T PLN00206 342 QLAIWVETKQKKQ----KLFDILKSKQHFKPPAVVFVSSRLGADLLANAITVV--------TGLKALSIHGEKSMKERRE 409 (518)
T ss_pred EEEEeccchhHHH----HHHHHHHhhcccCCCEEEEcCCchhHHHHHHHHhhc--------cCcceEEeeCCCCHHHHHH
Confidence 2222111112111 12222221 23467999999999999999988653 2678999999999999999
Q ss_pred hcCCCCCCCcEEEEeCCCcccccCCCCeEEEEeCCCccceeecCCCCcccceeeecCHHhHHHhhcccCCC-CCcEEEEc
Q 006122 327 VFSPTPRGKRKVVISTNIAETSLTLEGIVYVVDSGFSKQRFYNPISDIENLVVAPISKASARQRAGRAGRV-RPGKCYRL 405 (660)
Q Consensus 327 v~~~f~~g~~~vlvaT~i~e~Gidip~v~~VId~g~~k~~~~~~~~~~~~l~~~~~s~~~~~QR~GRaGR~-~~G~~~~l 405 (660)
+++.|++|+.+|||||+++++|||+|+|++||++|+ |.+..+|+||+|||||. ..|.++.+
T Consensus 410 il~~Fr~G~~~ILVaTdvl~rGiDip~v~~VI~~d~------------------P~s~~~yihRiGRaGR~g~~G~ai~f 471 (518)
T PLN00206 410 VMKSFLVGEVPVIVATGVLGRGVDLLRVRQVIIFDM------------------PNTIKEYIHQIGRASRMGEKGTAIVF 471 (518)
T ss_pred HHHHHHCCCCCEEEEecHhhccCCcccCCEEEEeCC------------------CCCHHHHHHhccccccCCCCeEEEEE
Confidence 999999999999999999999999999999999877 88999999999999999 78999999
Q ss_pred cChHHhh
Q 006122 406 YTEEYFV 412 (660)
Q Consensus 406 ~~~~~~~ 412 (660)
+++++..
T Consensus 472 ~~~~~~~ 478 (518)
T PLN00206 472 VNEEDRN 478 (518)
T ss_pred EchhHHH
Confidence 9987644
No 26
>COG1204 Superfamily II helicase [General function prediction only]
Probab=100.00 E-value=6.8e-38 Score=351.35 Aligned_cols=426 Identities=21% Similarity=0.227 Sum_probs=288.0
Q ss_pred HHHHHHHHHHHhcCCEEEEEcCCCCcHHHHHHHHHHhccccCCCeEEEEeCchHHHHHHHHHHH-HHHhCCeeeeEEeee
Q 006122 52 YKYRTAILYLVETHATTIIVGETGSGKTTQIPQYLKEAGWADGGRVIACTQPRRLAVQAVASRV-AEEMGVKVGEEVGYT 130 (660)
Q Consensus 52 ~~~~~~i~~~l~~~~~vii~apTGsGKT~~ip~~l~~~~~~~~~~~i~v~p~r~la~~~~~~~~-~~~~~~~~~~~vg~~ 130 (660)
.++|..+...+.+++|++|++|||||||.+.-..+.......+.++||++|.|+|+.+.+.+.- .+.+|.+++..+|..
T Consensus 34 ~~qq~av~~~~~~~~N~li~aPTgsGKTlIA~lai~~~l~~~~~k~vYivPlkALa~Ek~~~~~~~~~~GirV~~~TgD~ 113 (766)
T COG1204 34 NPQQEAVEKGLLSDENVLISAPTGSGKTLIALLAILSTLLEGGGKVVYIVPLKALAEEKYEEFSRLEELGIRVGISTGDY 113 (766)
T ss_pred HHHHHHhhccccCCCcEEEEcCCCCchHHHHHHHHHHHHHhcCCcEEEEeChHHHHHHHHHHhhhHHhcCCEEEEecCCc
Confidence 3455555666667899999999999999776666666544446789999999999998665543 367899999999943
Q ss_pred eeccccCCCCCceEEEechHHHHHHHhcCCC-CCCCcEEEEeCCCcCCc--ChhHHHHHHHHHHHhcCCceEEEeeccc-
Q 006122 131 IRFEDFTNKDLTAIKFLTDGVLLREMMDDPL-LTKYSVIMVDEAHERSI--STDILLGLLKKIQRCRSDLRLIISSATI- 206 (660)
Q Consensus 131 ~~~~~~~~~~~~~I~v~T~~~ll~~l~~~~~-l~~~~~iIiDE~Her~~--~~d~ll~~l~~~~~~~~~~kii~~SAT~- 206 (660)
.... .... .++|+|+||+++...+.+.+. +.++++|||||+|-.+- ....+..++.++.......|+|++|||+
T Consensus 114 ~~~~-~~l~-~~~ViVtT~EK~Dsl~R~~~~~~~~V~lvViDEiH~l~d~~RG~~lE~iv~r~~~~~~~~rivgLSATlp 191 (766)
T COG1204 114 DLDD-ERLA-RYDVIVTTPEKLDSLTRKRPSWIEEVDLVVIDEIHLLGDRTRGPVLESIVARMRRLNELIRIVGLSATLP 191 (766)
T ss_pred ccch-hhhc-cCCEEEEchHHhhHhhhcCcchhhcccEEEEeeeeecCCcccCceehhHHHHHHhhCcceEEEEEeeecC
Confidence 2222 1223 699999999999988877665 89999999999992221 1236667777777777789999999999
Q ss_pred chHHHHHHhhcCCCCCCCcccccCCCCCCeEEEECCccccceEEecCCCc----hhHHHHHHHHHHHHHhcCCCCcEEEE
Q 006122 207 EAKSMSAFFHARKGRRGLEGVELVPRLEPAILSVEGRGFNVQIHYVEEPV----SDYVQAAVSTVLLIHDKEPPGDILVF 282 (660)
Q Consensus 207 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~iLVF 282 (660)
|.+++++|++..+....++..+...... +...+.+..... ..........+...+ ..++++|||
T Consensus 192 N~~evA~wL~a~~~~~~~rp~~l~~~v~----------~~~~~~~~~~~~k~~~~~~~~~~~~~v~~~~--~~~~qvLvF 259 (766)
T COG1204 192 NAEEVADWLNAKLVESDWRPVPLRRGVP----------YVGAFLGADGKKKTWPLLIDNLALELVLESL--AEGGQVLVF 259 (766)
T ss_pred CHHHHHHHhCCcccccCCCCcccccCCc----------cceEEEEecCccccccccchHHHHHHHHHHH--hcCCeEEEE
Confidence 9999999999987655666655443221 111111111111 111122233333332 467899999
Q ss_pred cCCHHHHHHHHHHHHHHhhhc----------------cC------------CCCCeEEEEccCCCCHHHHhhhcCCCCCC
Q 006122 283 LTGQDDIDATIQLLTEEARTS----------------KK------------NSSGLIILPLYSGLSRAEQEQVFSPTPRG 334 (660)
Q Consensus 283 ~~~~~~i~~l~~~L~~~~~~~----------------~~------------~~~~~~v~~lh~~l~~~~r~~v~~~f~~g 334 (660)
|++++.+...++.+.+..... .. ..-...+++||+||+.++|..+.+.|+.|
T Consensus 260 v~sR~~a~~~A~~l~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~l~e~v~~GvafHhAGL~~~~R~~vE~~Fr~g 339 (766)
T COG1204 260 VHSRKEAEKTAKKLRIKMSATLSDDEKIVLDEGASPILIPETPTSEDEELAELVLRGVAFHHAGLPREDRQLVEDAFRKG 339 (766)
T ss_pred EecCchHHHHHHHHHHHHhhcCChhhhhhccccccccccccccccchHHHHHHHHhCccccccCCCHHHHHHHHHHHhcC
Confidence 999999999999998532210 00 00123489999999999999999999999
Q ss_pred CcEEEEeCCCcccccCCCCeEEEEeCCCccceeecCCCCcccceeeecCHHhHHHhhcccCCC---CCcEEEEcc-C--h
Q 006122 335 KRKVVISTNIAETSLTLEGIVYVVDSGFSKQRFYNPISDIENLVVAPISKASARQRAGRAGRV---RPGKCYRLY-T--E 408 (660)
Q Consensus 335 ~~~vlvaT~i~e~Gidip~v~~VId~g~~k~~~~~~~~~~~~l~~~~~s~~~~~QR~GRaGR~---~~G~~~~l~-~--~ 408 (660)
+++||+||+++++|+|+|.-++||. ...+|++..|+ .+++..++.||+|||||. .-|..+.+. + +
T Consensus 340 ~ikVlv~TpTLA~GVNLPA~~VIIk----~~~~y~~~~g~-----~~i~~~dv~QM~GRAGRPg~d~~G~~~i~~~~~~~ 410 (766)
T COG1204 340 KIKVLVSTPTLAAGVNLPARTVIIK----DTRRYDPKGGI-----VDIPVLDVLQMAGRAGRPGYDDYGEAIILATSHDE 410 (766)
T ss_pred CceEEEechHHhhhcCCcceEEEEe----eeEEEcCCCCe-----EECchhhHhhccCcCCCCCcCCCCcEEEEecCccc
Confidence 9999999999999999998777773 33568874442 389999999999999998 445444444 2 2
Q ss_pred HHhhhhCCCCCCCccccccch------hHHHHHHHcCCCCccC------C-------CCC--CCCCHHHHHHHHHHHHHC
Q 006122 409 EYFVKEIPAEGIPEMQRSNLV------SCVIQLKALGIDNILG------F-------DWP--ASPPPEAMIRALEVLYSL 467 (660)
Q Consensus 409 ~~~~~~~~~~~~pei~~~~l~------~~~l~l~~~~~~~~~~------~-------~~~--~~p~~~~~~~al~~L~~l 467 (660)
..+.........||...+.|. ..++.+.+.+ +... | +.. .--....+.+++..|.+.
T Consensus 411 ~~~~~~~~~~~~~e~~~s~l~~~~~~~~~l~~v~~~~--~~v~~~~~~~f~~~t~~~~~~~~~~~~~~~i~~~~~~L~~~ 488 (766)
T COG1204 411 LEYLAELYIQSEPEPIESKLGDELNLRTFLLGVISVG--DAVSWLELTDFYERTFYNPQTYGEGMLREEILASLRYLEEN 488 (766)
T ss_pred hhHHHHHhhccCcchHHHhhcccccchheEEEEEecc--chhhHHHHHHHHHHHHhhhhhccccchHHHHHHHHHHHHhc
Confidence 222211333344444222211 1111111111 0000 0 000 012345678899999998
Q ss_pred C-CCCCCC---CcchHHHHHhccCCCChhhhHHHHhhccc
Q 006122 468 G-VLDDDA---KLTSPTGFQVAEIPLEPMISKMILSSNEL 503 (660)
Q Consensus 468 g-ald~~~---~lT~~lG~~~~~lpl~p~~~~~l~~~~~~ 503 (660)
+ .++... .-| .+|+.+++++++|..++.+......
T Consensus 489 ~~~~~~~~~~~~at-e~g~~~s~~yi~~~sa~~~~~~l~~ 527 (766)
T COG1204 489 GLILDADWEALHAT-ELGKLVSRLYIDPESAKIFRDLLAE 527 (766)
T ss_pred cceeeccccccchh-HHHHHhhhccCCHHHHHHHHHHHHH
Confidence 6 555332 468 5999999999999999999876654
No 27
>PTZ00424 helicase 45; Provisional
Probab=100.00 E-value=1.1e-38 Score=344.12 Aligned_cols=341 Identities=16% Similarity=0.204 Sum_probs=241.1
Q ss_pred ccccCCCCCCCccchHhHHHHhcCCCcHHHHHHHHHHHhcCCEEEEEcCCCCcHHH--HHHHHHHhccccCCCeEEEEeC
Q 006122 25 LSSSLSSASSIGYGYASIEKQRQRLPVYKYRTAILYLVETHATTIIVGETGSGKTT--QIPQYLKEAGWADGGRVIACTQ 102 (660)
Q Consensus 25 ~~~~~~~~~~~~~~~~~~~~~~~~lPi~~~~~~i~~~l~~~~~vii~apTGsGKT~--~ip~~l~~~~~~~~~~~i~v~p 102 (660)
...+|.+++++...+..+.+....-| .+.|.+++..+.++++++++||||||||. ++|.+........+.++++++|
T Consensus 26 ~~~~~~~l~l~~~~~~~l~~~~~~~~-~~~Q~~ai~~i~~~~d~ii~apTGsGKT~~~~l~~l~~~~~~~~~~~~lil~P 104 (401)
T PTZ00424 26 IVDSFDALKLNEDLLRGIYSYGFEKP-SAIQQRGIKPILDGYDTIGQAQSGTGKTATFVIAALQLIDYDLNACQALILAP 104 (401)
T ss_pred ccCCHhhCCCCHHHHHHHHHcCCCCC-CHHHHHHHHHHhCCCCEEEECCCCChHHHHHHHHHHHHhcCCCCCceEEEECC
Confidence 45779999999999888877655444 45666677778788889999999999994 4443322221223457899999
Q ss_pred chHHHHHH--HHHHHHHHhCCeeeeEEeeeeecccc-CCCCCceEEEechHHHHHHHhcCCC-CCCCcEEEEeCCCcCCc
Q 006122 103 PRRLAVQA--VASRVAEEMGVKVGEEVGYTIRFEDF-TNKDLTAIKFLTDGVLLREMMDDPL-LTKYSVIMVDEAHERSI 178 (660)
Q Consensus 103 ~r~la~~~--~~~~~~~~~~~~~~~~vg~~~~~~~~-~~~~~~~I~v~T~~~ll~~l~~~~~-l~~~~~iIiDE~Her~~ 178 (660)
+++|+.|. ....+....+..+...+|.....+.. ......+|+|+||+.+.+.+..... +.++++|||||+|. ..
T Consensus 105 t~~L~~Q~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~Ivv~Tp~~l~~~l~~~~~~l~~i~lvViDEah~-~~ 183 (401)
T PTZ00424 105 TRELAQQIQKVVLALGDYLKVRCHACVGGTVVRDDINKLKAGVHMVVGTPGRVYDMIDKRHLRVDDLKLFILDEADE-ML 183 (401)
T ss_pred CHHHHHHHHHHHHHHhhhcCceEEEEECCcCHHHHHHHHcCCCCEEEECcHHHHHHHHhCCcccccccEEEEecHHH-HH
Confidence 99998762 33334444455555556533221111 1122579999999999998876654 89999999999994 33
Q ss_pred ChhHHHHHHHHHHHhcCCceEEEeecccchH--HHHHHhhcCCCCCCCcccccCCCCCCeEEEECCc---cccceEEecC
Q 006122 179 STDILLGLLKKIQRCRSDLRLIISSATIEAK--SMSAFFHARKGRRGLEGVELVPRLEPAILSVEGR---GFNVQIHYVE 253 (660)
Q Consensus 179 ~~d~ll~~l~~~~~~~~~~kii~~SAT~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~v~~~~~~ 253 (660)
+..+...+.+.+....++.+++++|||++.+ .+...+...+. .+.+... ...+..++..
T Consensus 184 ~~~~~~~~~~i~~~~~~~~~~i~~SAT~~~~~~~~~~~~~~~~~----------------~~~~~~~~~~~~~~~~~~~~ 247 (401)
T PTZ00424 184 SRGFKGQIYDVFKKLPPDVQVALFSATMPNEILELTTKFMRDPK----------------RILVKKDELTLEGIRQFYVA 247 (401)
T ss_pred hcchHHHHHHHHhhCCCCcEEEEEEecCCHHHHHHHHHHcCCCE----------------EEEeCCCCcccCCceEEEEe
Confidence 3334444444455566789999999999543 22322222221 1111111 1122333333
Q ss_pred CCchhHHHHHHHHHHHHHhcCCCCcEEEEcCCHHHHHHHHHHHHHHhhhccCCCCCeEEEEccCCCCHHHHhhhcCCCCC
Q 006122 254 EPVSDYVQAAVSTVLLIHDKEPPGDILVFLTGQDDIDATIQLLTEEARTSKKNSSGLIILPLYSGLSRAEQEQVFSPTPR 333 (660)
Q Consensus 254 ~~~~~~~~~~~~~~~~~~~~~~~~~iLVF~~~~~~i~~l~~~L~~~~~~~~~~~~~~~v~~lh~~l~~~~r~~v~~~f~~ 333 (660)
....++. ...+..+.......++||||+++++++.+++.|.+. ++.+..+||+++.++|..+++.|++
T Consensus 248 ~~~~~~~---~~~l~~~~~~~~~~~~ivF~~t~~~~~~l~~~l~~~---------~~~~~~~h~~~~~~~R~~i~~~f~~ 315 (401)
T PTZ00424 248 VEKEEWK---FDTLCDLYETLTITQAIIYCNTRRKVDYLTKKMHER---------DFTVSCMHGDMDQKDRDLIMREFRS 315 (401)
T ss_pred cChHHHH---HHHHHHHHHhcCCCeEEEEecCcHHHHHHHHHHHHC---------CCcEEEEeCCCCHHHHHHHHHHHHc
Confidence 3222222 223333444445677999999999999999998764 6789999999999999999999999
Q ss_pred CCcEEEEeCCCcccccCCCCeEEEEeCCCccceeecCCCCcccceeeecCHHhHHHhhcccCCC-CCcEEEEccChHHhh
Q 006122 334 GKRKVVISTNIAETSLTLEGIVYVVDSGFSKQRFYNPISDIENLVVAPISKASARQRAGRAGRV-RPGKCYRLYTEEYFV 412 (660)
Q Consensus 334 g~~~vlvaT~i~e~Gidip~v~~VId~g~~k~~~~~~~~~~~~l~~~~~s~~~~~QR~GRaGR~-~~G~~~~l~~~~~~~ 412 (660)
|+.+|||||+++++|||+|++++||++|+ |.|..+|+||+|||||. ..|.|+.++++++..
T Consensus 316 g~~~vLvaT~~l~~GiDip~v~~VI~~~~------------------p~s~~~y~qr~GRagR~g~~G~~i~l~~~~~~~ 377 (401)
T PTZ00424 316 GSTRVLITTDLLARGIDVQQVSLVINYDL------------------PASPENYIHRIGRSGRFGRKGVAINFVTPDDIE 377 (401)
T ss_pred CCCCEEEEcccccCCcCcccCCEEEEECC------------------CCCHHHEeecccccccCCCCceEEEEEcHHHHH
Confidence 99999999999999999999999999777 78999999999999998 789999999987655
Q ss_pred h
Q 006122 413 K 413 (660)
Q Consensus 413 ~ 413 (660)
.
T Consensus 378 ~ 378 (401)
T PTZ00424 378 Q 378 (401)
T ss_pred H
Confidence 4
No 28
>PRK04537 ATP-dependent RNA helicase RhlB; Provisional
Probab=100.00 E-value=1.3e-38 Score=352.81 Aligned_cols=334 Identities=16% Similarity=0.218 Sum_probs=237.0
Q ss_pred cCCCCCCCccchHhHHHHhcCCCcHHHHHHHHHHHhcCCEEEEEcCCCCcHH--HHHHHHHHhc---c----ccCCCeEE
Q 006122 28 SLSSASSIGYGYASIEKQRQRLPVYKYRTAILYLVETHATTIIVGETGSGKT--TQIPQYLKEA---G----WADGGRVI 98 (660)
Q Consensus 28 ~~~~~~~~~~~~~~~~~~~~~lPi~~~~~~i~~~l~~~~~vii~apTGsGKT--~~ip~~l~~~---~----~~~~~~~i 98 (660)
+|.+++++......+.+....-|. +.|.+.+..+.++++++++|||||||| +++|.+-... . .....++|
T Consensus 10 ~f~~l~l~~~l~~~L~~~g~~~pt-piQ~~~ip~~l~G~Dvi~~ApTGSGKTlafllpil~~l~~~~~~~~~~~~~~raL 88 (572)
T PRK04537 10 TFSSFDLHPALLAGLESAGFTRCT-PIQALTLPVALPGGDVAGQAQTGTGKTLAFLVAVMNRLLSRPALADRKPEDPRAL 88 (572)
T ss_pred ChhhcCCCHHHHHHHHHCCCCCCC-HHHHHHHHHHhCCCCEEEEcCCCCcHHHHHHHHHHHHHHhcccccccccCCceEE
Confidence 599999999888888777666665 455566667778888999999999999 5566442211 0 11135789
Q ss_pred EEeCchHHHHHHH--HHHHHHHhCCeeeeEEeeeeecc-ccCCCCCceEEEechHHHHHHHhcCC--CCCCCcEEEEeCC
Q 006122 99 ACTQPRRLAVQAV--ASRVAEEMGVKVGEEVGYTIRFE-DFTNKDLTAIKFLTDGVLLREMMDDP--LLTKYSVIMVDEA 173 (660)
Q Consensus 99 ~v~p~r~la~~~~--~~~~~~~~~~~~~~~vg~~~~~~-~~~~~~~~~I~v~T~~~ll~~l~~~~--~l~~~~~iIiDE~ 173 (660)
|++|+|+|+.|.. .+.+....++.++..+|...... ........+|+|+||++|++.+.... .+..+++||||||
T Consensus 89 Il~PTreLa~Qi~~~~~~l~~~~~i~v~~l~Gg~~~~~q~~~l~~~~dIiV~TP~rL~~~l~~~~~~~l~~v~~lViDEA 168 (572)
T PRK04537 89 ILAPTRELAIQIHKDAVKFGADLGLRFALVYGGVDYDKQRELLQQGVDVIIATPGRLIDYVKQHKVVSLHACEICVLDEA 168 (572)
T ss_pred EEeCcHHHHHHHHHHHHHHhccCCceEEEEECCCCHHHHHHHHhCCCCEEEECHHHHHHHHHhccccchhheeeeEecCH
Confidence 9999999998843 34455556677777766321111 11112257999999999999886643 3888999999999
Q ss_pred CcCCcChhHHHHHHHHHHHhc--CCceEEEeecccchH--HHH-HHhhcCCCCCCCcccccCCCCCCeEEEECCcc---c
Q 006122 174 HERSISTDILLGLLKKIQRCR--SDLRLIISSATIEAK--SMS-AFFHARKGRRGLEGVELVPRLEPAILSVEGRG---F 245 (660)
Q Consensus 174 Her~~~~d~ll~~l~~~~~~~--~~~kii~~SAT~~~~--~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~ 245 (660)
|. .++..+...+...+.... .+.+++++|||++.. .+. .++.... .+.+.... .
T Consensus 169 h~-lld~gf~~~i~~il~~lp~~~~~q~ll~SATl~~~v~~l~~~~l~~p~-----------------~i~v~~~~~~~~ 230 (572)
T PRK04537 169 DR-MFDLGFIKDIRFLLRRMPERGTRQTLLFSATLSHRVLELAYEHMNEPE-----------------KLVVETETITAA 230 (572)
T ss_pred HH-HhhcchHHHHHHHHHhcccccCceEEEEeCCccHHHHHHHHHHhcCCc-----------------EEEecccccccc
Confidence 93 444444444333332222 267899999999543 222 3332211 11111111 1
Q ss_pred cceEEecCCCchhHHHHHHHHHHHHHhcCCCCcEEEEcCCHHHHHHHHHHHHHHhhhccCCCCCeEEEEccCCCCHHHHh
Q 006122 246 NVQIHYVEEPVSDYVQAAVSTVLLIHDKEPPGDILVFLTGQDDIDATIQLLTEEARTSKKNSSGLIILPLYSGLSRAEQE 325 (660)
Q Consensus 246 ~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iLVF~~~~~~i~~l~~~L~~~~~~~~~~~~~~~v~~lh~~l~~~~r~ 325 (660)
.+...+......+ ....+..+.......++||||++++.++.+++.|.+. ++.+..+||+|++.+|.
T Consensus 231 ~i~q~~~~~~~~~----k~~~L~~ll~~~~~~k~LVF~nt~~~ae~l~~~L~~~---------g~~v~~lhg~l~~~eR~ 297 (572)
T PRK04537 231 RVRQRIYFPADEE----KQTLLLGLLSRSEGARTMVFVNTKAFVERVARTLERH---------GYRVGVLSGDVPQKKRE 297 (572)
T ss_pred ceeEEEEecCHHH----HHHHHHHHHhcccCCcEEEEeCCHHHHHHHHHHHHHc---------CCCEEEEeCCCCHHHHH
Confidence 1222222221111 2333444445556778999999999999999999775 78899999999999999
Q ss_pred hhcCCCCCCCcEEEEeCCCcccccCCCCeEEEEeCCCccceeecCCCCcccceeeecCHHhHHHhhcccCCC-CCcEEEE
Q 006122 326 QVFSPTPRGKRKVVISTNIAETSLTLEGIVYVVDSGFSKQRFYNPISDIENLVVAPISKASARQRAGRAGRV-RPGKCYR 404 (660)
Q Consensus 326 ~v~~~f~~g~~~vlvaT~i~e~Gidip~v~~VId~g~~k~~~~~~~~~~~~l~~~~~s~~~~~QR~GRaGR~-~~G~~~~ 404 (660)
++++.|++|+.+|||||+++++|||+|+|++||++++ |.+..+|+||+||+||. ..|.|+.
T Consensus 298 ~il~~Fr~G~~~VLVaTdv~arGIDip~V~~VInyd~------------------P~s~~~yvqRiGRaGR~G~~G~ai~ 359 (572)
T PRK04537 298 SLLNRFQKGQLEILVATDVAARGLHIDGVKYVYNYDL------------------PFDAEDYVHRIGRTARLGEEGDAIS 359 (572)
T ss_pred HHHHHHHcCCCeEEEEehhhhcCCCccCCCEEEEcCC------------------CCCHHHHhhhhcccccCCCCceEEE
Confidence 9999999999999999999999999999999999877 88999999999999999 8899999
Q ss_pred ccChHHh
Q 006122 405 LYTEEYF 411 (660)
Q Consensus 405 l~~~~~~ 411 (660)
++++.+.
T Consensus 360 ~~~~~~~ 366 (572)
T PRK04537 360 FACERYA 366 (572)
T ss_pred EecHHHH
Confidence 9987643
No 29
>PRK01297 ATP-dependent RNA helicase RhlB; Provisional
Probab=100.00 E-value=1.7e-38 Score=348.22 Aligned_cols=335 Identities=19% Similarity=0.232 Sum_probs=237.8
Q ss_pred cccCCCCCCCccchHhHHHHhcCCCcHHHHHHHHHHHhcCCEEEEEcCCCCcHH--HHHHHHHHhccc-------cCCCe
Q 006122 26 SSSLSSASSIGYGYASIEKQRQRLPVYKYRTAILYLVETHATTIIVGETGSGKT--TQIPQYLKEAGW-------ADGGR 96 (660)
Q Consensus 26 ~~~~~~~~~~~~~~~~~~~~~~~lPi~~~~~~i~~~l~~~~~vii~apTGsGKT--~~ip~~l~~~~~-------~~~~~ 96 (660)
+..|.+++++......+.+.. ---.+.+|.+++..+.+++++|+++||||||| +++|.+..-... ....+
T Consensus 86 ~~~f~~~~l~~~l~~~l~~~g-~~~~~~iQ~~ai~~~~~G~dvi~~apTGSGKTlay~lpil~~l~~~~~~~~~~~~~~~ 164 (475)
T PRK01297 86 KTRFHDFNLAPELMHAIHDLG-FPYCTPIQAQVLGYTLAGHDAIGRAQTGTGKTAAFLISIINQLLQTPPPKERYMGEPR 164 (475)
T ss_pred CCCHhHCCCCHHHHHHHHHCC-CCCCCHHHHHHHHHHhCCCCEEEECCCCChHHHHHHHHHHHHHHhcCcccccccCCce
Confidence 346888888887776666543 33467888899999999999999999999999 666654321110 11356
Q ss_pred EEEEeCchHHHHHHH--HHHHHHHhCCeeeeEEeeee---eccccCCCCCceEEEechHHHHHHHhcCC-CCCCCcEEEE
Q 006122 97 VIACTQPRRLAVQAV--ASRVAEEMGVKVGEEVGYTI---RFEDFTNKDLTAIKFLTDGVLLREMMDDP-LLTKYSVIMV 170 (660)
Q Consensus 97 ~i~v~p~r~la~~~~--~~~~~~~~~~~~~~~vg~~~---~~~~~~~~~~~~I~v~T~~~ll~~l~~~~-~l~~~~~iIi 170 (660)
+++++|+++|+.|.. .+.+.+..+..+...+|... ........ .++|+|+||++|+..+.... .++++++|||
T Consensus 165 aLil~PtreLa~Q~~~~~~~l~~~~~~~v~~~~gg~~~~~~~~~~~~~-~~~Iiv~TP~~Ll~~~~~~~~~l~~l~~lVi 243 (475)
T PRK01297 165 ALIIAPTRELVVQIAKDAAALTKYTGLNVMTFVGGMDFDKQLKQLEAR-FCDILVATPGRLLDFNQRGEVHLDMVEVMVL 243 (475)
T ss_pred EEEEeCcHHHHHHHHHHHHHhhccCCCEEEEEEccCChHHHHHHHhCC-CCCEEEECHHHHHHHHHcCCcccccCceEEe
Confidence 899999999998833 34455556777766666321 11111122 58999999999998776544 4899999999
Q ss_pred eCCCcCCcChhHHHHHHHHHHHh---cCCceEEEeecccc--hHHHHHHhhcCCCCCCCcccccCCCCCCeEEEECCcc-
Q 006122 171 DEAHERSISTDILLGLLKKIQRC---RSDLRLIISSATIE--AKSMSAFFHARKGRRGLEGVELVPRLEPAILSVEGRG- 244 (660)
Q Consensus 171 DE~Her~~~~d~ll~~l~~~~~~---~~~~kii~~SAT~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~- 244 (660)
||+|. ..+..+...+ +.+.+. ..+.+++++|||++ ...+.+.+...+. .+.+....
T Consensus 244 DEah~-l~~~~~~~~l-~~i~~~~~~~~~~q~i~~SAT~~~~~~~~~~~~~~~~~----------------~v~~~~~~~ 305 (475)
T PRK01297 244 DEADR-MLDMGFIPQV-RQIIRQTPRKEERQTLLFSATFTDDVMNLAKQWTTDPA----------------IVEIEPENV 305 (475)
T ss_pred chHHH-HHhcccHHHH-HHHHHhCCCCCCceEEEEEeecCHHHHHHHHHhccCCE----------------EEEeccCcC
Confidence 99994 3343343333 333332 23578999999983 3444444433321 22222111
Q ss_pred --ccceEEecCCCchhHHHHHHHHHHHHHhcCCCCcEEEEcCCHHHHHHHHHHHHHHhhhccCCCCCeEEEEccCCCCHH
Q 006122 245 --FNVQIHYVEEPVSDYVQAAVSTVLLIHDKEPPGDILVFLTGQDDIDATIQLLTEEARTSKKNSSGLIILPLYSGLSRA 322 (660)
Q Consensus 245 --~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iLVF~~~~~~i~~l~~~L~~~~~~~~~~~~~~~v~~lh~~l~~~ 322 (660)
..++.++......+ ....+..+......+++||||+++++++.+++.|.+. ++.+..+||+++.+
T Consensus 306 ~~~~~~~~~~~~~~~~----k~~~l~~ll~~~~~~~~IVF~~s~~~~~~l~~~L~~~---------~~~~~~~~g~~~~~ 372 (475)
T PRK01297 306 ASDTVEQHVYAVAGSD----KYKLLYNLVTQNPWERVMVFANRKDEVRRIEERLVKD---------GINAAQLSGDVPQH 372 (475)
T ss_pred CCCcccEEEEEecchh----HHHHHHHHHHhcCCCeEEEEeCCHHHHHHHHHHHHHc---------CCCEEEEECCCCHH
Confidence 11222222211122 1223333444455678999999999999999999664 67899999999999
Q ss_pred HHhhhcCCCCCCCcEEEEeCCCcccccCCCCeEEEEeCCCccceeecCCCCcccceeeecCHHhHHHhhcccCCC-CCcE
Q 006122 323 EQEQVFSPTPRGKRKVVISTNIAETSLTLEGIVYVVDSGFSKQRFYNPISDIENLVVAPISKASARQRAGRAGRV-RPGK 401 (660)
Q Consensus 323 ~r~~v~~~f~~g~~~vlvaT~i~e~Gidip~v~~VId~g~~k~~~~~~~~~~~~l~~~~~s~~~~~QR~GRaGR~-~~G~ 401 (660)
+|.++++.|++|+++|||||+++++|||||++++||++|+ |.|..+|+||+|||||. +.|.
T Consensus 373 ~R~~~~~~Fr~G~~~vLvaT~~l~~GIDi~~v~~VI~~~~------------------P~s~~~y~Qr~GRaGR~g~~g~ 434 (475)
T PRK01297 373 KRIKTLEGFREGKIRVLVATDVAGRGIHIDGISHVINFTL------------------PEDPDDYVHRIGRTGRAGASGV 434 (475)
T ss_pred HHHHHHHHHhCCCCcEEEEccccccCCcccCCCEEEEeCC------------------CCCHHHHHHhhCccCCCCCCce
Confidence 9999999999999999999999999999999999999888 88999999999999999 7899
Q ss_pred EEEccChHHh
Q 006122 402 CYRLYTEEYF 411 (660)
Q Consensus 402 ~~~l~~~~~~ 411 (660)
++.++++++.
T Consensus 435 ~i~~~~~~d~ 444 (475)
T PRK01297 435 SISFAGEDDA 444 (475)
T ss_pred EEEEecHHHH
Confidence 9999997643
No 30
>KOG0343 consensus RNA Helicase [RNA processing and modification]
Probab=100.00 E-value=5.9e-39 Score=326.85 Aligned_cols=336 Identities=21% Similarity=0.277 Sum_probs=279.4
Q ss_pred ccCCCCCCCccchHhHHHHhcCCCcHHHHHHHHHHHhcCCEEEEEcCCCCcHH--HHHHHH--HHhccccC--CCeEEEE
Q 006122 27 SSLSSASSIGYGYASIEKQRQRLPVYKYRTAILYLVETHATTIIVGETGSGKT--TQIPQY--LKEAGWAD--GGRVIAC 100 (660)
Q Consensus 27 ~~~~~~~~~~~~~~~~~~~~~~lPi~~~~~~i~~~l~~~~~vii~apTGsGKT--~~ip~~--l~~~~~~~--~~~~i~v 100 (660)
--|.++|++......+.+.....|...+++.|..++.+++ ++-.|.|||||| +++|.+ ++...|.. +-.++++
T Consensus 69 ~kF~dlpls~~t~kgLke~~fv~~teiQ~~~Ip~aL~G~D-vlGAAkTGSGKTLAFlvPvlE~L~r~kWs~~DGlGalII 147 (758)
T KOG0343|consen 69 KKFADLPLSQKTLKGLKEAKFVKMTEIQRDTIPMALQGHD-VLGAAKTGSGKTLAFLVPVLEALYRLKWSPTDGLGALII 147 (758)
T ss_pred hhHHhCCCchHHHHhHhhcCCccHHHHHHhhcchhccCcc-cccccccCCCceeeehHHHHHHHHHcCCCCCCCceeEEe
Confidence 3599999999999999988888888888888888886555 899999999999 888855 44445543 4568999
Q ss_pred eCchHHHHH--HHHHHHHHHhCCeeeeEEeee-eeccccCCCCCceEEEechHHHHHHHhcCCC--CCCCcEEEEeCCCc
Q 006122 101 TQPRRLAVQ--AVASRVAEEMGVKVGEEVGYT-IRFEDFTNKDLTAIKFLTDGVLLREMMDDPL--LTKYSVIMVDEAHE 175 (660)
Q Consensus 101 ~p~r~la~~--~~~~~~~~~~~~~~~~~vg~~-~~~~~~~~~~~~~I~v~T~~~ll~~l~~~~~--l~~~~~iIiDE~He 175 (660)
+|+|+||.| .+..++++..+.+.|..+|.. +.++..... ..+|+|||||+|++++..++. -.++.++|+|||+
T Consensus 148 SPTRELA~QtFevL~kvgk~h~fSaGLiiGG~~~k~E~eRi~-~mNILVCTPGRLLQHmde~~~f~t~~lQmLvLDEAD- 225 (758)
T KOG0343|consen 148 SPTRELALQTFEVLNKVGKHHDFSAGLIIGGKDVKFELERIS-QMNILVCTPGRLLQHMDENPNFSTSNLQMLVLDEAD- 225 (758)
T ss_pred cchHHHHHHHHHHHHHHhhccccccceeecCchhHHHHHhhh-cCCeEEechHHHHHHhhhcCCCCCCcceEEEeccHH-
Confidence 999999999 778889999999999999843 445544445 789999999999999988876 5788999999999
Q ss_pred CCcChhHHHHHHHHHHHhcCCceEEEeeccc--chHHHHHHhhcCCCCCCCcccccCCCCCCeEEEEC-----Cccccce
Q 006122 176 RSISTDILLGLLKKIQRCRSDLRLIISSATI--EAKSMSAFFHARKGRRGLEGVELVPRLEPAILSVE-----GRGFNVQ 248 (660)
Q Consensus 176 r~~~~d~ll~~l~~~~~~~~~~kii~~SAT~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~v~ 248 (660)
|.+++.|--.+-..+....+..|.+++|||. .+.++++.--..|. .+.+. +.+....
T Consensus 226 R~LDMGFk~tL~~Ii~~lP~~RQTLLFSATqt~svkdLaRLsL~dP~----------------~vsvhe~a~~atP~~L~ 289 (758)
T KOG0343|consen 226 RMLDMGFKKTLNAIIENLPKKRQTLLFSATQTKSVKDLARLSLKDPV----------------YVSVHENAVAATPSNLQ 289 (758)
T ss_pred HHHHHhHHHHHHHHHHhCChhheeeeeecccchhHHHHHHhhcCCCc----------------EEEEeccccccChhhhh
Confidence 9999999888777777788899999999998 67777776444442 33332 2334456
Q ss_pred EEecCCCchhHHHHHHHHHHHHHhcCCCCcEEEEcCCHHHHHHHHHHHHHHhhhccCCCCCeEEEEccCCCCHHHHhhhc
Q 006122 249 IHYVEEPVSDYVQAAVSTVLLIHDKEPPGDILVFLTGQDDIDATIQLLTEEARTSKKNSSGLIILPLYSGLSRAEQEQVF 328 (660)
Q Consensus 249 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iLVF~~~~~~i~~l~~~L~~~~~~~~~~~~~~~v~~lh~~l~~~~r~~v~ 328 (660)
.+|...+..+. +..++....+....++|||++|.+++..+++.+++. .|++.+..+||+|++..|..++
T Consensus 290 Q~y~~v~l~~K----i~~L~sFI~shlk~K~iVF~SscKqvkf~~e~F~rl-------rpg~~l~~L~G~~~Q~~R~ev~ 358 (758)
T KOG0343|consen 290 QSYVIVPLEDK----IDMLWSFIKSHLKKKSIVFLSSCKQVKFLYEAFCRL-------RPGIPLLALHGTMSQKKRIEVY 358 (758)
T ss_pred heEEEEehhhH----HHHHHHHHHhccccceEEEEehhhHHHHHHHHHHhc-------CCCCceeeeccchhHHHHHHHH
Confidence 66776665553 455555667777888999999999999999998875 3689999999999999999999
Q ss_pred CCCCCCCcEEEEeCCCcccccCCCCeEEEEeCCCccceeecCCCCcccceeeecCHHhHHHhhcccCCC-CCcEEEEccC
Q 006122 329 SPTPRGKRKVVISTNIAETSLTLEGIVYVVDSGFSKQRFYNPISDIENLVVAPISKASARQRAGRAGRV-RPGKCYRLYT 407 (660)
Q Consensus 329 ~~f~~g~~~vlvaT~i~e~Gidip~v~~VId~g~~k~~~~~~~~~~~~l~~~~~s~~~~~QR~GRaGR~-~~G~~~~l~~ 407 (660)
..|-...--|++||+++++|+|+|.|++||..+. |....+|+||+||+.|. ..|.++.+.+
T Consensus 359 ~~F~~~~~~vLF~TDv~aRGLDFpaVdwViQ~DC------------------Pedv~tYIHRvGRtAR~~~~G~sll~L~ 420 (758)
T KOG0343|consen 359 KKFVRKRAVVLFCTDVAARGLDFPAVDWVIQVDC------------------PEDVDTYIHRVGRTARYKERGESLLMLT 420 (758)
T ss_pred HHHHHhcceEEEeehhhhccCCCcccceEEEecC------------------chhHHHHHHHhhhhhcccCCCceEEEEc
Confidence 9998888899999999999999999999999776 88999999999999999 8899999988
Q ss_pred hHH
Q 006122 408 EEY 410 (660)
Q Consensus 408 ~~~ 410 (660)
+..
T Consensus 421 psE 423 (758)
T KOG0343|consen 421 PSE 423 (758)
T ss_pred chh
Confidence 765
No 31
>KOG0338 consensus ATP-dependent RNA helicase [RNA processing and modification]
Probab=100.00 E-value=2.4e-39 Score=326.98 Aligned_cols=358 Identities=20% Similarity=0.266 Sum_probs=268.0
Q ss_pred CCCCCCC-cccCCCCCcccc--cccCCCCCCCccchHhHHHHhcCCCcHHHHHHHHHHHhcCCEEEEEcCCCCcHH--HH
Q 006122 7 PGAEKPR-LLDDEEGGVVFL--SSSLSSASSIGYGYASIEKQRQRLPVYKYRTAILYLVETHATTIIVGETGSGKT--TQ 81 (660)
Q Consensus 7 ~~~~~~~-~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~lPi~~~~~~i~~~l~~~~~vii~apTGsGKT--~~ 81 (660)
++-+++. ++..+++..... -.+|+..++|++.++.+......-|...|+..|.-++.. ++++.+|.|||||| |.
T Consensus 158 ~e~e~~~~Ffa~~dg~s~~~~~~~sF~~mNLSRPlLka~~~lGy~~PTpIQ~a~IPvallg-kDIca~A~TGsGKTAAF~ 236 (691)
T KOG0338|consen 158 EEDEAKKFFFATEDGVSADTQMNESFQSMNLSRPLLKACSTLGYKKPTPIQVATIPVALLG-KDICACAATGSGKTAAFA 236 (691)
T ss_pred hhhhcccccccccchhhhhhHHhhhHHhcccchHHHHHHHhcCCCCCCchhhhcccHHhhc-chhhheecccCCchhhhH
Confidence 3334444 333344443322 248999999999999998888888988888888877765 55899999999999 77
Q ss_pred HHHHHHhc---cccCCCeEEEEeCchHHHHH--HHHHHHHHHhCCeeeeEEe-eeeeccccCCCCCceEEEechHHHHHH
Q 006122 82 IPQYLKEA---GWADGGRVIACTQPRRLAVQ--AVASRVAEEMGVKVGEEVG-YTIRFEDFTNKDLTAIKFLTDGVLLRE 155 (660)
Q Consensus 82 ip~~l~~~---~~~~~~~~i~v~p~r~la~~--~~~~~~~~~~~~~~~~~vg-~~~~~~~~~~~~~~~I~v~T~~~ll~~ 155 (660)
+|.+-.-. ......++++++|+|+|+.| ++.+.++.+.++.+|..+| ..++.........++|+|+|||+|.++
T Consensus 237 lPiLERLlYrPk~~~~TRVLVL~PTRELaiQv~sV~~qlaqFt~I~~~L~vGGL~lk~QE~~LRs~PDIVIATPGRlIDH 316 (691)
T KOG0338|consen 237 LPILERLLYRPKKVAATRVLVLVPTRELAIQVHSVTKQLAQFTDITVGLAVGGLDLKAQEAVLRSRPDIVIATPGRLIDH 316 (691)
T ss_pred HHHHHHHhcCcccCcceeEEEEeccHHHHHHHHHHHHHHHhhccceeeeeecCccHHHHHHHHhhCCCEEEecchhHHHH
Confidence 77553322 11123568999999999999 8999999999999999998 344433333334799999999999999
Q ss_pred HhcCCC--CCCCcEEEEeCCCcCCcChhHHHHHHHHHHHhcCCceEEEeeccc--chHHHHHHhhcCCCCCCCcccccCC
Q 006122 156 MMDDPL--LTKYSVIMVDEAHERSISTDILLGLLKKIQRCRSDLRLIISSATI--EAKSMSAFFHARKGRRGLEGVELVP 231 (660)
Q Consensus 156 l~~~~~--l~~~~~iIiDE~Her~~~~d~ll~~l~~~~~~~~~~kii~~SAT~--~~~~~~~~~~~~~~~~~~~~~~~~~ 231 (660)
+.+.+. +.++.++|+|||+ |+++..|...+-..+....++.|.+++|||+ .+..+...--+.|++
T Consensus 317 lrNs~sf~ldsiEVLvlDEAD-RMLeegFademnEii~lcpk~RQTmLFSATMteeVkdL~slSL~kPvr---------- 385 (691)
T KOG0338|consen 317 LRNSPSFNLDSIEVLVLDEAD-RMLEEGFADEMNEIIRLCPKNRQTMLFSATMTEEVKDLASLSLNKPVR---------- 385 (691)
T ss_pred hccCCCccccceeEEEechHH-HHHHHHHHHHHHHHHHhccccccceeehhhhHHHHHHHHHhhcCCCeE----------
Confidence 998775 8999999999999 8998888777766666667789999999999 556666654444422
Q ss_pred CCCCeEEEECCcc--ccceEEecCC-CchhHHHHHHHHHHHHHhcCCCCcEEEEcCCHHHHHHHHHHHHHHhhhccCCCC
Q 006122 232 RLEPAILSVEGRG--FNVQIHYVEE-PVSDYVQAAVSTVLLIHDKEPPGDILVFLTGQDDIDATIQLLTEEARTSKKNSS 308 (660)
Q Consensus 232 ~~~~~~~~~~~~~--~~v~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~iLVF~~~~~~i~~l~~~L~~~~~~~~~~~~ 308 (660)
++.-+... ......|... +..+....+ .+..++...-...++||+.|++.++++.-.|--.
T Consensus 386 -----ifvd~~~~~a~~LtQEFiRIR~~re~dRea--~l~~l~~rtf~~~~ivFv~tKk~AHRl~IllGLl--------- 449 (691)
T KOG0338|consen 386 -----IFVDPNKDTAPKLTQEFIRIRPKREGDREA--MLASLITRTFQDRTIVFVRTKKQAHRLRILLGLL--------- 449 (691)
T ss_pred -----EEeCCccccchhhhHHHheeccccccccHH--HHHHHHHHhcccceEEEEehHHHHHHHHHHHHHh---------
Confidence 11111111 1111122211 111111111 1112222223556999999999999987776433
Q ss_pred CeEEEEccCCCCHHHHhhhcCCCCCCCcEEEEeCCCcccccCCCCeEEEEeCCCccceeecCCCCcccceeeecCHHhHH
Q 006122 309 GLIILPLYSGLSRAEQEQVFSPTPRGKRKVVISTNIAETSLTLEGIVYVVDSGFSKQRFYNPISDIENLVVAPISKASAR 388 (660)
Q Consensus 309 ~~~v~~lh~~l~~~~r~~v~~~f~~g~~~vlvaT~i~e~Gidip~v~~VId~g~~k~~~~~~~~~~~~l~~~~~s~~~~~ 388 (660)
++.+.-+||+|++++|...++.|++++++|||||++|++|+||++|..|||+.+ |.+...|+
T Consensus 450 gl~agElHGsLtQ~QRlesL~kFk~~eidvLiaTDvAsRGLDI~gV~tVINy~m------------------P~t~e~Y~ 511 (691)
T KOG0338|consen 450 GLKAGELHGSLTQEQRLESLEKFKKEEIDVLIATDVASRGLDIEGVQTVINYAM------------------PKTIEHYL 511 (691)
T ss_pred hchhhhhcccccHHHHHHHHHHHHhccCCEEEEechhhccCCccceeEEEeccC------------------chhHHHHH
Confidence 889999999999999999999999999999999999999999999999999877 99999999
Q ss_pred HhhcccCCC-CCcEEEEccChHH
Q 006122 389 QRAGRAGRV-RPGKCYRLYTEEY 410 (660)
Q Consensus 389 QR~GRaGR~-~~G~~~~l~~~~~ 410 (660)
||+||+.|. +.|..+.|+.+++
T Consensus 512 HRVGRTARAGRaGrsVtlvgE~d 534 (691)
T KOG0338|consen 512 HRVGRTARAGRAGRSVTLVGESD 534 (691)
T ss_pred HHhhhhhhcccCcceEEEecccc
Confidence 999999999 8999999998764
No 32
>PRK11634 ATP-dependent RNA helicase DeaD; Provisional
Probab=100.00 E-value=7.1e-38 Score=348.70 Aligned_cols=335 Identities=18% Similarity=0.211 Sum_probs=240.8
Q ss_pred cCCCCCCCccchHhHHHHhcCCCcHHHHHHHHHHHhcCCEEEEEcCCCCcHH--HHHHHHHHhccccCCCeEEEEeCchH
Q 006122 28 SLSSASSIGYGYASIEKQRQRLPVYKYRTAILYLVETHATTIIVGETGSGKT--TQIPQYLKEAGWADGGRVIACTQPRR 105 (660)
Q Consensus 28 ~~~~~~~~~~~~~~~~~~~~~lPi~~~~~~i~~~l~~~~~vii~apTGsGKT--~~ip~~l~~~~~~~~~~~i~v~p~r~ 105 (660)
+|.+++++......+.+....- .++.|.+++..+.+++++|++|||||||| +++|.+-.........++|+++|+|+
T Consensus 7 ~f~~l~L~~~ll~al~~~G~~~-ptpiQ~~ai~~ll~g~dvl~~ApTGsGKT~af~lpll~~l~~~~~~~~~LIL~PTre 85 (629)
T PRK11634 7 TFADLGLKAPILEALNDLGYEK-PSPIQAECIPHLLNGRDVLGMAQTGSGKTAAFSLPLLHNLDPELKAPQILVLAPTRE 85 (629)
T ss_pred CHhhcCCCHHHHHHHHHCCCCC-CCHHHHHHHHHHHcCCCEEEEcCCCCcHHHHHHHHHHHHhhhccCCCeEEEEeCcHH
Confidence 4889999998888776654444 45567777777888899999999999999 44554322222223457899999999
Q ss_pred HHHHH--HHHHHHHHh-CCeeeeEEeeeee-ccccCCCCCceEEEechHHHHHHHhcCCC-CCCCcEEEEeCCCcCCcCh
Q 006122 106 LAVQA--VASRVAEEM-GVKVGEEVGYTIR-FEDFTNKDLTAIKFLTDGVLLREMMDDPL-LTKYSVIMVDEAHERSIST 180 (660)
Q Consensus 106 la~~~--~~~~~~~~~-~~~~~~~vg~~~~-~~~~~~~~~~~I~v~T~~~ll~~l~~~~~-l~~~~~iIiDE~Her~~~~ 180 (660)
|+.|. ..+.+.+.+ +..+...+|.... .+.......++|+|+||+.+++++..... +.++++|||||||+ .++.
T Consensus 86 La~Qv~~~l~~~~~~~~~i~v~~~~gG~~~~~q~~~l~~~~~IVVgTPgrl~d~l~r~~l~l~~l~~lVlDEAd~-ml~~ 164 (629)
T PRK11634 86 LAVQVAEAMTDFSKHMRGVNVVALYGGQRYDVQLRALRQGPQIVVGTPGRLLDHLKRGTLDLSKLSGLVLDEADE-MLRM 164 (629)
T ss_pred HHHHHHHHHHHHHhhcCCceEEEEECCcCHHHHHHHhcCCCCEEEECHHHHHHHHHcCCcchhhceEEEeccHHH-Hhhc
Confidence 98762 223333333 5666555553211 11111122689999999999999877665 89999999999995 4555
Q ss_pred hHHHHHHHHHHHhcCCceEEEeecccch--HHHHHHhhcCCCCCCCcccccCCCCCCeEEEECCcc---ccceEEecCCC
Q 006122 181 DILLGLLKKIQRCRSDLRLIISSATIEA--KSMSAFFHARKGRRGLEGVELVPRLEPAILSVEGRG---FNVQIHYVEEP 255 (660)
Q Consensus 181 d~ll~~l~~~~~~~~~~kii~~SAT~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~v~~~~~~~~ 255 (660)
.+...+...+.......+++++|||++. ..+...+...+. .+.+.... ..+...|....
T Consensus 165 gf~~di~~Il~~lp~~~q~llfSAT~p~~i~~i~~~~l~~~~----------------~i~i~~~~~~~~~i~q~~~~v~ 228 (629)
T PRK11634 165 GFIEDVETIMAQIPEGHQTALFSATMPEAIRRITRRFMKEPQ----------------EVRIQSSVTTRPDISQSYWTVW 228 (629)
T ss_pred ccHHHHHHHHHhCCCCCeEEEEEccCChhHHHHHHHHcCCCe----------------EEEccCccccCCceEEEEEEec
Confidence 5666665555566778899999999943 334433332221 22222211 12233333222
Q ss_pred chhHHHHHHHHHHHHHhcCCCCcEEEEcCCHHHHHHHHHHHHHHhhhccCCCCCeEEEEccCCCCHHHHhhhcCCCCCCC
Q 006122 256 VSDYVQAAVSTVLLIHDKEPPGDILVFLTGQDDIDATIQLLTEEARTSKKNSSGLIILPLYSGLSRAEQEQVFSPTPRGK 335 (660)
Q Consensus 256 ~~~~~~~~~~~~~~~~~~~~~~~iLVF~~~~~~i~~l~~~L~~~~~~~~~~~~~~~v~~lh~~l~~~~r~~v~~~f~~g~ 335 (660)
..+. ...+..+........+||||+++.+++.+++.|.+. ++.+..+||+|++.+|.++++.|++|+
T Consensus 229 ~~~k----~~~L~~~L~~~~~~~~IVF~~tk~~a~~l~~~L~~~---------g~~~~~lhgd~~q~~R~~il~~Fr~G~ 295 (629)
T PRK11634 229 GMRK----NEALVRFLEAEDFDAAIIFVRTKNATLEVAEALERN---------GYNSAALNGDMNQALREQTLERLKDGR 295 (629)
T ss_pred hhhH----HHHHHHHHHhcCCCCEEEEeccHHHHHHHHHHHHhC---------CCCEEEeeCCCCHHHHHHHHHHHhCCC
Confidence 2222 223333334455678999999999999999999775 788999999999999999999999999
Q ss_pred cEEEEeCCCcccccCCCCeEEEEeCCCccceeecCCCCcccceeeecCHHhHHHhhcccCCC-CCcEEEEccChHHh
Q 006122 336 RKVVISTNIAETSLTLEGIVYVVDSGFSKQRFYNPISDIENLVVAPISKASARQRAGRAGRV-RPGKCYRLYTEEYF 411 (660)
Q Consensus 336 ~~vlvaT~i~e~Gidip~v~~VId~g~~k~~~~~~~~~~~~l~~~~~s~~~~~QR~GRaGR~-~~G~~~~l~~~~~~ 411 (660)
.+|||||+++++|||+|+|++||++++ |.+..+|.||+||+||. +.|.++.++++.+.
T Consensus 296 ~~ILVATdv~arGIDip~V~~VI~~d~------------------P~~~e~yvqRiGRtGRaGr~G~ai~~v~~~e~ 354 (629)
T PRK11634 296 LDILIATDVAARGLDVERISLVVNYDI------------------PMDSESYVHRIGRTGRAGRAGRALLFVENRER 354 (629)
T ss_pred CCEEEEcchHhcCCCcccCCEEEEeCC------------------CCCHHHHHHHhccccCCCCcceEEEEechHHH
Confidence 999999999999999999999999777 88999999999999999 78999999987543
No 33
>KOG0328 consensus Predicted ATP-dependent RNA helicase FAL1, involved in rRNA maturation, DEAD-box superfamily [Translation, ribosomal structure and biogenesis]
Probab=100.00 E-value=2.2e-38 Score=298.11 Aligned_cols=341 Identities=16% Similarity=0.213 Sum_probs=267.6
Q ss_pred ccCCCCCCCccchHhHHHHhcCCCcHHHHHHHHHHHhcCCEEEEEcCCCCcHHHHHHH-HHHh-ccccCCCeEEEEeCch
Q 006122 27 SSLSSASSIGYGYASIEKQRQRLPVYKYRTAILYLVETHATTIIVGETGSGKTTQIPQ-YLKE-AGWADGGRVIACTQPR 104 (660)
Q Consensus 27 ~~~~~~~~~~~~~~~~~~~~~~lPi~~~~~~i~~~l~~~~~vii~apTGsGKT~~ip~-~l~~-~~~~~~~~~i~v~p~r 104 (660)
.+|++-+++.+.++.+..+...-|-..+|.+|...+ ++++||.+|..|+|||..+.. .+.. ....+..++++++|+|
T Consensus 27 ~~F~~Mgl~edlLrgiY~yGfekPS~IQqrAi~~Il-kGrdViaQaqSGTGKTa~~si~vlq~~d~~~r~tQ~lilsPTR 105 (400)
T KOG0328|consen 27 PTFDDMGLKEDLLRGIYAYGFEKPSAIQQRAIPQIL-KGRDVIAQAQSGTGKTATFSISVLQSLDISVRETQALILSPTR 105 (400)
T ss_pred cchhhcCchHHHHHHHHHhccCCchHHHhhhhhhhh-cccceEEEecCCCCceEEEEeeeeeecccccceeeEEEecChH
Confidence 479999999999999999999999998888877755 566699999999999922111 1111 1112335789999999
Q ss_pred HHHHH--HHHHHHHHHhCCeeeeEEeeeeeccccC-CCCCceEEEechHHHHHHHhcCCC-CCCCcEEEEeCCCcCCcCh
Q 006122 105 RLAVQ--AVASRVAEEMGVKVGEEVGYTIRFEDFT-NKDLTAIKFLTDGVLLREMMDDPL-LTKYSVIMVDEAHERSIST 180 (660)
Q Consensus 105 ~la~~--~~~~~~~~~~~~~~~~~vg~~~~~~~~~-~~~~~~I~v~T~~~ll~~l~~~~~-l~~~~~iIiDE~Her~~~~ 180 (660)
+|+.| .+...++..+++.+...+|...-.++.. ..-..+++.+|||++++++....+ -+.+.++|+||++| .++-
T Consensus 106 ELa~Qi~~vi~alg~~mnvq~hacigg~n~gedikkld~G~hvVsGtPGrv~dmikr~~L~tr~vkmlVLDEaDe-mL~k 184 (400)
T KOG0328|consen 106 ELAVQIQKVILALGDYMNVQCHACIGGKNLGEDIKKLDYGQHVVSGTPGRVLDMIKRRSLRTRAVKMLVLDEADE-MLNK 184 (400)
T ss_pred HHHHHHHHHHHHhcccccceEEEEecCCccchhhhhhcccceEeeCCCchHHHHHHhccccccceeEEEeccHHH-HHHh
Confidence 99988 6777788889998877777544333322 222689999999999999977666 78899999999996 4555
Q ss_pred hHHHHHHHHHHHhcCCceEEEeecccchH--HHHHHhhcCCCCCCCcccccCCCCCCeEEEECCcc-ccceEEecCCCch
Q 006122 181 DILLGLLKKIQRCRSDLRLIISSATIEAK--SMSAFFHARKGRRGLEGVELVPRLEPAILSVEGRG-FNVQIHYVEEPVS 257 (660)
Q Consensus 181 d~ll~~l~~~~~~~~~~kii~~SAT~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~v~~~~~~~~~~ 257 (660)
.+-..+........++.|++++|||++-+ ...++|...|++. .+.-.+.+ ..++.+|.....+
T Consensus 185 gfk~Qiydiyr~lp~~~Qvv~~SATlp~eilemt~kfmtdpvri--------------lvkrdeltlEgIKqf~v~ve~E 250 (400)
T KOG0328|consen 185 GFKEQIYDIYRYLPPGAQVVLVSATLPHEILEMTEKFMTDPVRI--------------LVKRDELTLEGIKQFFVAVEKE 250 (400)
T ss_pred hHHHHHHHHHHhCCCCceEEEEeccCcHHHHHHHHHhcCCceeE--------------EEecCCCchhhhhhheeeechh
Confidence 67677777777788899999999999554 4446676666321 11111222 2356677665544
Q ss_pred hHHHHHHHHHHHHHhcCCCCcEEEEcCCHHHHHHHHHHHHHHhhhccCCCCCeEEEEccCCCCHHHHhhhcCCCCCCCcE
Q 006122 258 DYVQAAVSTVLLIHDKEPPGDILVFLTGQDDIDATIQLLTEEARTSKKNSSGLIILPLYSGLSRAEQEQVFSPTPRGKRK 337 (660)
Q Consensus 258 ~~~~~~~~~~~~~~~~~~~~~iLVF~~~~~~i~~l~~~L~~~~~~~~~~~~~~~v~~lh~~l~~~~r~~v~~~f~~g~~~ 337 (660)
+. ...++.++...-.-.+.+|||+|+..+..+.+.+.+. .+.|...||+|+++||.++++.|+.|+-+
T Consensus 251 ew---KfdtLcdLYd~LtItQavIFcnTk~kVdwLtekm~~~---------nftVssmHGDm~qkERd~im~dFRsg~Sr 318 (400)
T KOG0328|consen 251 EW---KFDTLCDLYDTLTITQAVIFCNTKRKVDWLTEKMREA---------NFTVSSMHGDMEQKERDKIMNDFRSGKSR 318 (400)
T ss_pred hh---hHhHHHHHhhhhehheEEEEecccchhhHHHHHHHhh---------CceeeeccCCcchhHHHHHHHHhhcCCce
Confidence 43 3444555555555677999999999999999999876 89999999999999999999999999999
Q ss_pred EEEeCCCcccccCCCCeEEEEeCCCccceeecCCCCcccceeeecCHHhHHHhhcccCCC-CCcEEEEccChHHhhh
Q 006122 338 VVISTNIAETSLTLEGIVYVVDSGFSKQRFYNPISDIENLVVAPISKASARQRAGRAGRV-RPGKCYRLYTEEYFVK 413 (660)
Q Consensus 338 vlvaT~i~e~Gidip~v~~VId~g~~k~~~~~~~~~~~~l~~~~~s~~~~~QR~GRaGR~-~~G~~~~l~~~~~~~~ 413 (660)
|+++|++-++|+|+|.|..|||+++ |..+..|+||+||.||. +.|.++.++..++...
T Consensus 319 vLitTDVwaRGiDv~qVslviNYDL------------------P~nre~YIHRIGRSGRFGRkGvainFVk~~d~~~ 377 (400)
T KOG0328|consen 319 VLITTDVWARGIDVQQVSLVINYDL------------------PNNRELYIHRIGRSGRFGRKGVAINFVKSDDLRI 377 (400)
T ss_pred EEEEechhhccCCcceeEEEEecCC------------------CccHHHHhhhhccccccCCcceEEEEecHHHHHH
Confidence 9999999999999999999999888 88899999999999999 8999999999887654
No 34
>KOG0333 consensus U5 snRNP-like RNA helicase subunit [RNA processing and modification]
Probab=100.00 E-value=8.8e-38 Score=316.93 Aligned_cols=333 Identities=20% Similarity=0.277 Sum_probs=262.1
Q ss_pred ccCCCCCCCccchHhHHHHhcCCCcHHHHHHHHHHHhcCCEEEEEcCCCCcHH--HHHHHHHHhccc---------cCCC
Q 006122 27 SSLSSASSIGYGYASIEKQRQRLPVYKYRTAILYLVETHATTIIVGETGSGKT--TQIPQYLKEAGW---------ADGG 95 (660)
Q Consensus 27 ~~~~~~~~~~~~~~~~~~~~~~lPi~~~~~~i~~~l~~~~~vii~apTGsGKT--~~ip~~l~~~~~---------~~~~ 95 (660)
.+|...++....+.-+.......|...++..|. ...+++++|..|+|||||| +++|.++..... ..++
T Consensus 245 rnwEE~~~P~e~l~~I~~~~y~eptpIqR~aip-l~lQ~rD~igvaETgsGktaaf~ipLl~~IsslP~~~~~en~~~gp 323 (673)
T KOG0333|consen 245 RNWEESGFPLELLSVIKKPGYKEPTPIQRQAIP-LGLQNRDPIGVAETGSGKTAAFLIPLLIWISSLPPMARLENNIEGP 323 (673)
T ss_pred cChhhcCCCHHHHHHHHhcCCCCCchHHHhhcc-chhccCCeeeEEeccCCccccchhhHHHHHHcCCCcchhhhcccCc
Confidence 368888899999988888888888887777766 5566777999999999999 888877664322 2356
Q ss_pred eEEEEeCchHHHHH--HHHHHHHHHhCCeeeeEEeeeeeccc--cCCCCCceEEEechHHHHHHHhcCCC-CCCCcEEEE
Q 006122 96 RVIACTQPRRLAVQ--AVASRVAEEMGVKVGEEVGYTIRFED--FTNKDLTAIKFLTDGVLLREMMDDPL-LTKYSVIMV 170 (660)
Q Consensus 96 ~~i~v~p~r~la~~--~~~~~~~~~~~~~~~~~vg~~~~~~~--~~~~~~~~I~v~T~~~ll~~l~~~~~-l~~~~~iIi 170 (660)
.++++.|+|.|+.| .-...+++.+++.+...+|.....+. ..+. .++|+++|||.|++.+.+..+ +++..+||+
T Consensus 324 yaiilaptReLaqqIeeEt~kf~~~lg~r~vsvigg~s~EEq~fqls~-gceiviatPgrLid~Lenr~lvl~qctyvvl 402 (673)
T KOG0333|consen 324 YAIILAPTRELAQQIEEETNKFGKPLGIRTVSVIGGLSFEEQGFQLSM-GCEIVIATPGRLIDSLENRYLVLNQCTYVVL 402 (673)
T ss_pred eeeeechHHHHHHHHHHHHHHhcccccceEEEEecccchhhhhhhhhc-cceeeecCchHHHHHHHHHHHHhccCceEec
Confidence 78999999999887 33556777888888888886554444 3344 799999999999999877665 899999999
Q ss_pred eCCCcCCcChhHHHHHHHHHHHhc-----------------------CC--ceEEEeecccc--hHHHH-HHhhcCCCCC
Q 006122 171 DEAHERSISTDILLGLLKKIQRCR-----------------------SD--LRLIISSATIE--AKSMS-AFFHARKGRR 222 (660)
Q Consensus 171 DE~Her~~~~d~ll~~l~~~~~~~-----------------------~~--~kii~~SAT~~--~~~~~-~~~~~~~~~~ 222 (660)
|||+ |++++.|-..+.+.+.... +. .+.+++|||++ ++.++ .||....
T Consensus 403 dead-rmiDmgfE~dv~~iL~~mPssn~k~~tde~~~~~~~~~~~~~~k~yrqT~mftatm~p~verlar~ylr~pv--- 478 (673)
T KOG0333|consen 403 DEAD-RMIDMGFEPDVQKILEQMPSSNAKPDTDEKEGEERVRKNFSSSKKYRQTVMFTATMPPAVERLARSYLRRPV--- 478 (673)
T ss_pred cchh-hhhcccccHHHHHHHHhCCccccCCCccchhhHHHHHhhcccccceeEEEEEecCCChHHHHHHHHHhhCCe---
Confidence 9999 8888888777777665432 11 57899999993 45555 5665432
Q ss_pred CCcccccCCCCCCeEEEE--CCcccc-ceEEecCCCchhHHHHHHHHHHHHHhcCCCCcEEEEcCCHHHHHHHHHHHHHH
Q 006122 223 GLEGVELVPRLEPAILSV--EGRGFN-VQIHYVEEPVSDYVQAAVSTVLLIHDKEPPGDILVFLTGQDDIDATIQLLTEE 299 (660)
Q Consensus 223 ~~~~~~~~~~~~~~~~~~--~~~~~~-v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iLVF~~~~~~i~~l~~~L~~~ 299 (660)
++.+ .|+..| ++.........+. ...+..+..+....+||||+|+++.++.+++.|.+.
T Consensus 479 --------------~vtig~~gk~~~rveQ~v~m~~ed~k----~kkL~eil~~~~~ppiIIFvN~kk~~d~lAk~LeK~ 540 (673)
T KOG0333|consen 479 --------------VVTIGSAGKPTPRVEQKVEMVSEDEK----RKKLIEILESNFDPPIIIFVNTKKGADALAKILEKA 540 (673)
T ss_pred --------------EEEeccCCCCccchheEEEEecchHH----HHHHHHHHHhCCCCCEEEEEechhhHHHHHHHHhhc
Confidence 3333 333332 3333332222222 344444555556778999999999999999999887
Q ss_pred hhhccCCCCCeEEEEccCCCCHHHHhhhcCCCCCCCcEEEEeCCCcccccCCCCeEEEEeCCCccceeecCCCCccccee
Q 006122 300 ARTSKKNSSGLIILPLYSGLSRAEQEQVFSPTPRGKRKVVISTNIAETSLTLEGIVYVVDSGFSKQRFYNPISDIENLVV 379 (660)
Q Consensus 300 ~~~~~~~~~~~~v~~lh~~l~~~~r~~v~~~f~~g~~~vlvaT~i~e~Gidip~v~~VId~g~~k~~~~~~~~~~~~l~~ 379 (660)
++.+..|||+-++++|..+++.|++|...|+||||+|++|||||+|.+||++++
T Consensus 541 ---------g~~~~tlHg~k~qeQRe~aL~~fr~~t~dIlVaTDvAgRGIDIpnVSlVinydm----------------- 594 (673)
T KOG0333|consen 541 ---------GYKVTTLHGGKSQEQRENALADFREGTGDILVATDVAGRGIDIPNVSLVINYDM----------------- 594 (673)
T ss_pred ---------cceEEEeeCCccHHHHHHHHHHHHhcCCCEEEEecccccCCCCCccceeeecch-----------------
Confidence 899999999999999999999999999999999999999999999999999888
Q ss_pred eecCHHhHHHhhcccCCC-CCcEEEEccChHH
Q 006122 380 APISKASARQRAGRAGRV-RPGKCYRLYTEEY 410 (660)
Q Consensus 380 ~~~s~~~~~QR~GRaGR~-~~G~~~~l~~~~~ 410 (660)
+-|..+|.||+||+||. +.|.++.++++++
T Consensus 595 -aksieDYtHRIGRTgRAGk~GtaiSflt~~d 625 (673)
T KOG0333|consen 595 -AKSIEDYTHRIGRTGRAGKSGTAISFLTPAD 625 (673)
T ss_pred -hhhHHHHHHHhccccccccCceeEEEeccch
Confidence 67889999999999999 8999999999876
No 35
>TIGR03817 DECH_helic helicase/secretion neighborhood putative DEAH-box helicase. A conserved gene neighborhood widely spread in the Actinobacteria contains this uncharacterized DEAH-box family helicase encoded convergently towards an operon of genes for protein homologous to type II secretion and pilus formation proteins. The context suggests that this helicase may play a role in conjugal transfer of DNA.
Probab=100.00 E-value=9.4e-37 Score=346.28 Aligned_cols=329 Identities=16% Similarity=0.175 Sum_probs=224.6
Q ss_pred hHHHHhcCCCcHHHHHHHHHHHhcCCEEEEEcCCCCcHH--HHHHHHHHhccccCCCeEEEEeCchHHHHHHHHHH--HH
Q 006122 41 SIEKQRQRLPVYKYRTAILYLVETHATTIIVGETGSGKT--TQIPQYLKEAGWADGGRVIACTQPRRLAVQAVASR--VA 116 (660)
Q Consensus 41 ~~~~~~~~lPi~~~~~~i~~~l~~~~~vii~apTGsGKT--~~ip~~l~~~~~~~~~~~i~v~p~r~la~~~~~~~--~~ 116 (660)
+..+...--..+++|.+.+.++.+++++++++||||||| +++|.+-... ...+.++++++|+|+|+.|+.... +.
T Consensus 27 ~~L~~~g~~~p~~~Q~~ai~~il~G~nvvv~apTGSGKTla~~LPiL~~l~-~~~~~~aL~l~PtraLa~q~~~~l~~l~ 105 (742)
T TIGR03817 27 AALEAAGIHRPWQHQARAAELAHAGRHVVVATGTASGKSLAYQLPVLSALA-DDPRATALYLAPTKALAADQLRAVRELT 105 (742)
T ss_pred HHHHHcCCCcCCHHHHHHHHHHHCCCCEEEECCCCCcHHHHHHHHHHHHHh-hCCCcEEEEEcChHHHHHHHHHHHHHhc
Confidence 333444444678899999999999999999999999999 7777553322 124567899999999998865542 22
Q ss_pred HHhCCeeeeEEeeeeeccccCCCCCceEEEechHHHHHHHhcC-----CCCCCCcEEEEeCCCcCC-cChhHHHHHHHHH
Q 006122 117 EEMGVKVGEEVGYTIRFEDFTNKDLTAIKFLTDGVLLREMMDD-----PLLTKYSVIMVDEAHERS-ISTDILLGLLKKI 190 (660)
Q Consensus 117 ~~~~~~~~~~vg~~~~~~~~~~~~~~~I~v~T~~~ll~~l~~~-----~~l~~~~~iIiDE~Her~-~~~d~ll~~l~~~ 190 (660)
..+..++...|.....+.......++|+++||++|...+... ..++++++|||||+|... .....+..+++++
T Consensus 106 -~~~i~v~~~~Gdt~~~~r~~i~~~~~IivtTPd~L~~~~L~~~~~~~~~l~~l~~vViDEah~~~g~fg~~~~~il~rL 184 (742)
T TIGR03817 106 -LRGVRPATYDGDTPTEERRWAREHARYVLTNPDMLHRGILPSHARWARFLRRLRYVVIDECHSYRGVFGSHVALVLRRL 184 (742)
T ss_pred -cCCeEEEEEeCCCCHHHHHHHhcCCCEEEEChHHHHHhhccchhHHHHHHhcCCEEEEeChhhccCccHHHHHHHHHHH
Confidence 224555555554332222222225899999999997654322 137899999999999421 1122233334443
Q ss_pred HH----hcCCceEEEeeccc-chHHHHHHhhcCCCCCCCcccccCCCCCCeEEEECCcccc-ceEEecCCC---------
Q 006122 191 QR----CRSDLRLIISSATI-EAKSMSAFFHARKGRRGLEGVELVPRLEPAILSVEGRGFN-VQIHYVEEP--------- 255 (660)
Q Consensus 191 ~~----~~~~~kii~~SAT~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-v~~~~~~~~--------- 255 (660)
.+ ...+.|+|++|||+ ++..+.+++...+.. ++...+.... ....+...+
T Consensus 185 ~ri~~~~g~~~q~i~~SATi~n~~~~~~~l~g~~~~---------------~i~~~~~~~~~~~~~~~~p~~~~~~~~~~ 249 (742)
T TIGR03817 185 RRLCARYGASPVFVLASATTADPAAAASRLIGAPVV---------------AVTEDGSPRGARTVALWEPPLTELTGENG 249 (742)
T ss_pred HHHHHhcCCCCEEEEEecCCCCHHHHHHHHcCCCeE---------------EECCCCCCcCceEEEEecCCccccccccc
Confidence 32 23568999999999 666666665544311 1111111111 111111100
Q ss_pred ---chhHHHHHHHHHHHHHhcCCCCcEEEEcCCHHHHHHHHHHHHHHhhhccCCCCCeEEEEccCCCCHHHHhhhcCCCC
Q 006122 256 ---VSDYVQAAVSTVLLIHDKEPPGDILVFLTGQDDIDATIQLLTEEARTSKKNSSGLIILPLYSGLSRAEQEQVFSPTP 332 (660)
Q Consensus 256 ---~~~~~~~~~~~~~~~~~~~~~~~iLVF~~~~~~i~~l~~~L~~~~~~~~~~~~~~~v~~lh~~l~~~~r~~v~~~f~ 332 (660)
...........+..+.. .+.++||||+|++.++.++..|.+.+.... ...+..+..+||++++++|.++++.|+
T Consensus 250 ~~~r~~~~~~~~~~l~~l~~--~~~~~IVF~~sr~~ae~l~~~l~~~l~~~~-~~l~~~v~~~hgg~~~~eR~~ie~~f~ 326 (742)
T TIGR03817 250 APVRRSASAEAADLLADLVA--EGARTLTFVRSRRGAELVAAIARRLLGEVD-PDLAERVAAYRAGYLPEDRRELERALR 326 (742)
T ss_pred cccccchHHHHHHHHHHHHH--CCCCEEEEcCCHHHHHHHHHHHHHHHHhhc-cccccchhheecCCCHHHHHHHHHHHH
Confidence 00111122333333333 356899999999999999999987643221 112457889999999999999999999
Q ss_pred CCCcEEEEeCCCcccccCCCCeEEEEeCCCccceeecCCCCcccceeeecCHHhHHHhhcccCCC-CCcEEEEccC
Q 006122 333 RGKRKVVISTNIAETSLTLEGIVYVVDSGFSKQRFYNPISDIENLVVAPISKASARQRAGRAGRV-RPGKCYRLYT 407 (660)
Q Consensus 333 ~g~~~vlvaT~i~e~Gidip~v~~VId~g~~k~~~~~~~~~~~~l~~~~~s~~~~~QR~GRaGR~-~~G~~~~l~~ 407 (660)
+|+.++|||||++|+|||||++++||++|+ |.+.++|+||+|||||. +.|.++.+.+
T Consensus 327 ~G~i~vLVaTd~lerGIDI~~vd~VI~~~~------------------P~s~~~y~qRiGRaGR~G~~g~ai~v~~ 384 (742)
T TIGR03817 327 DGELLGVATTNALELGVDISGLDAVVIAGF------------------PGTRASLWQQAGRAGRRGQGALVVLVAR 384 (742)
T ss_pred cCCceEEEECchHhccCCcccccEEEEeCC------------------CCCHHHHHHhccccCCCCCCcEEEEEeC
Confidence 999999999999999999999999999888 88999999999999999 7899998886
No 36
>COG1202 Superfamily II helicase, archaea-specific [General function prediction only]
Probab=100.00 E-value=1.2e-36 Score=311.47 Aligned_cols=442 Identities=19% Similarity=0.177 Sum_probs=309.0
Q ss_pred CCCCCCCccchHhHHHHhcCCCcHHHHHH-HHHHHhcCCEEEEEcCCCCcHHHHHHHHHHhccccCCCeEEEEeCchHHH
Q 006122 29 LSSASSIGYGYASIEKQRQRLPVYKYRTA-ILYLVETHATTIIVGETGSGKTTQIPQYLKEAGWADGGRVIACTQPRRLA 107 (660)
Q Consensus 29 ~~~~~~~~~~~~~~~~~~~~lPi~~~~~~-i~~~l~~~~~vii~apTGsGKT~~ip~~l~~~~~~~~~~~i~v~p~r~la 107 (660)
...++++..+ +.+++.+..--+.+.|-- +-.-+.++++.+|+.+|+||||.+-...-.......+++.++++|.-+||
T Consensus 196 vdeLdipe~f-k~~lk~~G~~eLlPVQ~laVe~GLLeG~nllVVSaTasGKTLIgElAGi~~~l~~g~KmlfLvPLVALA 274 (830)
T COG1202 196 VDELDIPEKF-KRMLKREGIEELLPVQVLAVEAGLLEGENLLVVSATASGKTLIGELAGIPRLLSGGKKMLFLVPLVALA 274 (830)
T ss_pred ccccCCcHHH-HHHHHhcCcceecchhhhhhhhccccCCceEEEeccCCCcchHHHhhCcHHHHhCCCeEEEEehhHHhh
Confidence 5667776644 566666644333333433 33447789999999999999995544333333344578899999999999
Q ss_pred HHHHHHHHHH--HhCCeeeeEEeee-eecc-----ccCCCCCceEEEechHHHHHHHhcCCCCCCCcEEEEeCCC-----
Q 006122 108 VQAVASRVAE--EMGVKVGEEVGYT-IRFE-----DFTNKDLTAIKFLTDGVLLREMMDDPLLTKYSVIMVDEAH----- 174 (660)
Q Consensus 108 ~~~~~~~~~~--~~~~~~~~~vg~~-~~~~-----~~~~~~~~~I~v~T~~~ll~~l~~~~~l~~~~~iIiDE~H----- 174 (660)
.|...++..+ .+|..+...+|.. ++.. ..... +++|+|+|.+-+--.+.....+.+++.|||||+|
T Consensus 275 NQKy~dF~~rYs~LglkvairVG~srIk~~~~pv~~~t~~-dADIIVGTYEGiD~lLRtg~~lgdiGtVVIDEiHtL~de 353 (830)
T COG1202 275 NQKYEDFKERYSKLGLKVAIRVGMSRIKTREEPVVVDTSP-DADIIVGTYEGIDYLLRTGKDLGDIGTVVIDEIHTLEDE 353 (830)
T ss_pred cchHHHHHHHhhcccceEEEEechhhhcccCCccccCCCC-CCcEEEeechhHHHHHHcCCcccccceEEeeeeeeccch
Confidence 9976554433 4566666677732 2111 12233 7999999999988888888889999999999999
Q ss_pred cCCcChhHHHHHHHHHHHhcCCceEEEeeccc-chHHHHHHhhcCCCCCCCcccccCCCCCCeEEEECCccccceEEecC
Q 006122 175 ERSISTDILLGLLKKIQRCRSDLRLIISSATI-EAKSMSAFFHARKGRRGLEGVELVPRLEPAILSVEGRGFNVQIHYVE 253 (660)
Q Consensus 175 er~~~~d~ll~~l~~~~~~~~~~kii~~SAT~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~ 253 (660)
||+. -+.+++.++....++.|+|.+|||+ |++.++..++.. .+..+.++.|++.|..-
T Consensus 354 ERG~---RLdGLI~RLr~l~~~AQ~i~LSATVgNp~elA~~l~a~------------------lV~y~~RPVplErHlvf 412 (830)
T COG1202 354 ERGP---RLDGLIGRLRYLFPGAQFIYLSATVGNPEELAKKLGAK------------------LVLYDERPVPLERHLVF 412 (830)
T ss_pred hccc---chhhHHHHHHHhCCCCeEEEEEeecCChHHHHHHhCCe------------------eEeecCCCCChhHeeee
Confidence 5665 4556777777788999999999999 999999999876 46667888888866654
Q ss_pred CCchh----HHHHHHHHHHH-HHhcCCCCcEEEEcCCHHHHHHHHHHHHHHhhhccCCCCCeEEEEccCCCCHHHHhhhc
Q 006122 254 EPVSD----YVQAAVSTVLL-IHDKEPPGDILVFLTGQDDIDATIQLLTEEARTSKKNSSGLIILPLYSGLSRAEQEQVF 328 (660)
Q Consensus 254 ~~~~~----~~~~~~~~~~~-~~~~~~~~~iLVF~~~~~~i~~l~~~L~~~~~~~~~~~~~~~v~~lh~~l~~~~r~~v~ 328 (660)
..... .+...++.-+. .....-.|++|||.+|+..++.+++.|... ++.+.++|+||+..+|+.+.
T Consensus 413 ~~~e~eK~~ii~~L~k~E~~~~sskg~rGQtIVFT~SRrr~h~lA~~L~~k---------G~~a~pYHaGL~y~eRk~vE 483 (830)
T COG1202 413 ARNESEKWDIIARLVKREFSTESSKGYRGQTIVFTYSRRRCHELADALTGK---------GLKAAPYHAGLPYKERKSVE 483 (830)
T ss_pred ecCchHHHHHHHHHHHHHHhhhhccCcCCceEEEecchhhHHHHHHHhhcC---------CcccccccCCCcHHHHHHHH
Confidence 43222 22222222221 223345799999999999999999999765 89999999999999999999
Q ss_pred CCCCCCCcEEEEeCCCcccccCCCCeEEEEeCCCccceeecCCCCcccceeeecCHHhHHHhhcccCCC---CCcEEEEc
Q 006122 329 SPTPRGKRKVVISTNIAETSLTLEGIVYVVDSGFSKQRFYNPISDIENLVVAPISKASARQRAGRAGRV---RPGKCYRL 405 (660)
Q Consensus 329 ~~f~~g~~~vlvaT~i~e~Gidip~v~~VId~g~~k~~~~~~~~~~~~l~~~~~s~~~~~QR~GRaGR~---~~G~~~~l 405 (660)
..|.++.+.++|+|-.++.|+|+|.-.++..+= .+-..|.|..+|.||.|||||. ..|++|.+
T Consensus 484 ~~F~~q~l~~VVTTAAL~AGVDFPASQVIFEsL--------------aMG~~WLs~~EF~QM~GRAGRp~yHdrGkVyll 549 (830)
T COG1202 484 RAFAAQELAAVVTTAALAAGVDFPASQVIFESL--------------AMGIEWLSVREFQQMLGRAGRPDYHDRGKVYLL 549 (830)
T ss_pred HHHhcCCcceEeehhhhhcCCCCchHHHHHHHH--------------HcccccCCHHHHHHHhcccCCCCcccCceEEEE
Confidence 999999999999999999999999766655421 1234599999999999999998 78999999
Q ss_pred cChH-HhhhhCCCC------------CCCcccc---ccchhHHHHHHHcCCC-------CccCCCCCCCCCHHHHHHHHH
Q 006122 406 YTEE-YFVKEIPAE------------GIPEMQR---SNLVSCVIQLKALGID-------NILGFDWPASPPPEAMIRALE 462 (660)
Q Consensus 406 ~~~~-~~~~~~~~~------------~~pei~~---~~l~~~~l~l~~~~~~-------~~~~~~~~~~p~~~~~~~al~ 462 (660)
..+. .|...|.+. +.|-+.. ..-.+-+|. ..++. .+.+..+-. .-..+.++.
T Consensus 550 vepg~~Y~~~m~~TEdevA~kLL~s~~e~V~vey~ee~e~e~vLA--~~~v~~s~~~i~~v~~~~~g~---~~~~~k~l~ 624 (830)
T COG1202 550 VEPGKKYHASMEETEDEVAFKLLESEPEPVIVEYDEEDEEENVLA--SAGVTNSLSVIERVNSLMLGA---AFDPKKALS 624 (830)
T ss_pred ecCChhhcccccccHHHHHHHHhcCCCCcceeccCcHHHHHHHHH--HhhhcCcHHHHhhcChhhccc---cCCHHHHHH
Confidence 8754 232222221 1121111 122222333 22221 111111111 112478999
Q ss_pred HHHHCCCCCCCC---CcchHHHHHhccCCCChhhhHHHHhhcccCchhHHHHHHhhcccC-ccccc
Q 006122 463 VLYSLGVLDDDA---KLTSPTGFQVAEIPLEPMISKMILSSNELGCSEEIITISAVLSIQ-SIWVS 524 (660)
Q Consensus 463 ~L~~lgald~~~---~lT~~lG~~~~~lpl~p~~~~~l~~~~~~~c~~~~~~i~a~ls~~-~~f~~ 524 (660)
.|..+|.|+.+| ++| +.|++++..-+.|..|..|..+. .... +.+.|++.|.-. +.+.+
T Consensus 625 ~Lee~g~i~~~G~~v~~T-~yGrava~~Fl~p~~a~~Ir~~v-~~~~-~pl~i~~~l~pfE~ayls 687 (830)
T COG1202 625 KLEEYGMIKKKGNIVRPT-PYGRAVAMSFLGPSEAEFIREGV-LASM-DPLRIAAELEPFENAYLS 687 (830)
T ss_pred HHHhcCCeeccCCEeeec-cccceeEEeecCchHHHHHHHhh-hccC-ChHhHhhccccccccccC
Confidence 999999999877 579 79999999999999999998886 2222 345666666544 33333
No 37
>KOG0345 consensus ATP-dependent RNA helicase [RNA processing and modification]
Probab=100.00 E-value=2.4e-36 Score=303.24 Aligned_cols=353 Identities=20% Similarity=0.229 Sum_probs=260.4
Q ss_pred CCCC--CCCccchHhHHHHhcCCCcHHHHHHHHHHHhcCCEEEEEcCCCCcHH--HHHHHHHHh---ccccCCC--eEEE
Q 006122 29 LSSA--SSIGYGYASIEKQRQRLPVYKYRTAILYLVETHATTIIVGETGSGKT--TQIPQYLKE---AGWADGG--RVIA 99 (660)
Q Consensus 29 ~~~~--~~~~~~~~~~~~~~~~lPi~~~~~~i~~~l~~~~~vii~apTGsGKT--~~ip~~l~~---~~~~~~~--~~i~ 99 (660)
|+++ |+++.....+.+.... -..+.|-..+..+.++++|++.++|||||| +++|.+-.. ....+.+ ..++
T Consensus 6 ~~~l~~~L~~~l~~~l~~~GF~-~mTpVQa~tIPlll~~KDVvveavTGSGKTlAFllP~le~i~rr~~~~~~~~vgalI 84 (567)
T KOG0345|consen 6 FSSLAPPLSPWLLEALDESGFE-KMTPVQAATIPLLLKNKDVVVEAVTGSGKTLAFLLPMLEIIYRREAKTPPGQVGALI 84 (567)
T ss_pred hhhcCCCccHHHHHHHHhcCCc-ccCHHHHhhhHHHhcCCceEEEcCCCCCchhhHHHHHHHHHHhhccCCCccceeEEE
Confidence 4444 3446665555443222 244557777788889999999999999999 888866322 2222222 4699
Q ss_pred EeCchHHHHH--HHHHHHHHH-hCCeeeeEEeeeeeccccCC--CCCceEEEechHHHHHHHhcCC-C--CCCCcEEEEe
Q 006122 100 CTQPRRLAVQ--AVASRVAEE-MGVKVGEEVGYTIRFEDFTN--KDLTAIKFLTDGVLLREMMDDP-L--LTKYSVIMVD 171 (660)
Q Consensus 100 v~p~r~la~~--~~~~~~~~~-~~~~~~~~vg~~~~~~~~~~--~~~~~I~v~T~~~ll~~l~~~~-~--l~~~~~iIiD 171 (660)
++|+|+|+.| +|++-+... .+..+...+|...-.++... ...+.|+|+|||+|.+.+.... . +.+++++|+|
T Consensus 85 IsPTRELa~QI~~V~~~F~~~l~~l~~~l~vGG~~v~~Di~~fkee~~nIlVgTPGRL~di~~~~~~~l~~rsLe~LVLD 164 (567)
T KOG0345|consen 85 ISPTRELARQIREVAQPFLEHLPNLNCELLVGGRSVEEDIKTFKEEGPNILVGTPGRLLDILQREAEKLSFRSLEILVLD 164 (567)
T ss_pred ecCcHHHHHHHHHHHHHHHHhhhccceEEEecCccHHHHHHHHHHhCCcEEEeCchhHHHHHhchhhhccccccceEEec
Confidence 9999999999 777766655 57778888886433222211 2278899999999999997633 2 5599999999
Q ss_pred CCCcCCcChhHHHHHHHHHHHhcCCceEEEeeccc--chHHHHHHhhcCCCCCCCcccccCCCCCCeEEEECCc-----c
Q 006122 172 EAHERSISTDILLGLLKKIQRCRSDLRLIISSATI--EAKSMSAFFHARKGRRGLEGVELVPRLEPAILSVEGR-----G 244 (660)
Q Consensus 172 E~Her~~~~d~ll~~l~~~~~~~~~~kii~~SAT~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~ 244 (660)
||+ |.+++.|...+-..+....++.|.=++|||. ..+++....-.+++. +.+... +
T Consensus 165 EAD-rLldmgFe~~~n~ILs~LPKQRRTGLFSATq~~~v~dL~raGLRNpv~----------------V~V~~k~~~~tP 227 (567)
T KOG0345|consen 165 EAD-RLLDMGFEASVNTILSFLPKQRRTGLFSATQTQEVEDLARAGLRNPVR----------------VSVKEKSKSATP 227 (567)
T ss_pred chH-hHhcccHHHHHHHHHHhcccccccccccchhhHHHHHHHHhhccCcee----------------eeecccccccCc
Confidence 999 9999999988888888888899999999998 445565554444432 122111 1
Q ss_pred ccceEEecCCCchhHHHHHHHHHHHHHhcCCCCcEEEEcCCHHHHHHHHHHHHHHhhhccCCCCCeEEEEccCCCCHHHH
Q 006122 245 FNVQIHYVEEPVSDYVQAAVSTVLLIHDKEPPGDILVFLTGQDDIDATIQLLTEEARTSKKNSSGLIILPLYSGLSRAEQ 324 (660)
Q Consensus 245 ~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iLVF~~~~~~i~~l~~~L~~~~~~~~~~~~~~~v~~lh~~l~~~~r 324 (660)
-.+..+|........ ...++++..+...+++|||++|-..++..+..+.... ....+..+||.|.+..|
T Consensus 228 S~L~~~Y~v~~a~eK----~~~lv~~L~~~~~kK~iVFF~TCasVeYf~~~~~~~l-------~~~~i~~iHGK~~q~~R 296 (567)
T KOG0345|consen 228 SSLALEYLVCEADEK----LSQLVHLLNNNKDKKCIVFFPTCASVEYFGKLFSRLL-------KKREIFSIHGKMSQKAR 296 (567)
T ss_pred hhhcceeeEecHHHH----HHHHHHHHhccccccEEEEecCcchHHHHHHHHHHHh-------CCCcEEEecchhcchhH
Confidence 225566666544443 3444555566677889999999999999999988763 37889999999999999
Q ss_pred hhhcCCCCCCCcEEEEeCCCcccccCCCCeEEEEeCCCccceeecCCCCcccceeeecCHHhHHHhhcccCCC-CCcEEE
Q 006122 325 EQVFSPTPRGKRKVVISTNIAETSLTLEGIVYVVDSGFSKQRFYNPISDIENLVVAPISKASARQRAGRAGRV-RPGKCY 403 (660)
Q Consensus 325 ~~v~~~f~~g~~~vlvaT~i~e~Gidip~v~~VId~g~~k~~~~~~~~~~~~l~~~~~s~~~~~QR~GRaGR~-~~G~~~ 403 (660)
.++++.|.+....+++|||++++|||||+|++||+++. |...++|.||+||+||. +.|.++
T Consensus 297 ~k~~~~F~~~~~~vl~~TDVaARGlDip~iD~VvQ~Dp------------------P~~~~~FvHR~GRTaR~gr~G~Ai 358 (567)
T KOG0345|consen 297 AKVLEAFRKLSNGVLFCTDVAARGLDIPGIDLVVQFDP------------------PKDPSSFVHRCGRTARAGREGNAI 358 (567)
T ss_pred HHHHHHHHhccCceEEeehhhhccCCCCCceEEEecCC------------------CCChhHHHhhcchhhhccCccceE
Confidence 99999999888899999999999999999999999544 66777888999999999 788877
Q ss_pred EccC--hHHhhhhCCCCCCCccccccc
Q 006122 404 RLYT--EEYFVKEIPAEGIPEMQRSNL 428 (660)
Q Consensus 404 ~l~~--~~~~~~~~~~~~~pei~~~~l 428 (660)
.+.. +..|...|.-...|++.+.+.
T Consensus 359 vfl~p~E~aYveFl~i~~~v~le~~~~ 385 (567)
T KOG0345|consen 359 VFLNPREEAYVEFLRIKGKVELERIDT 385 (567)
T ss_pred EEecccHHHHHHHHHhcCccchhhhcc
Confidence 7665 456665455555677766543
No 38
>KOG0326 consensus ATP-dependent RNA helicase [RNA processing and modification]
Probab=100.00 E-value=1.5e-37 Score=297.24 Aligned_cols=346 Identities=18% Similarity=0.187 Sum_probs=272.8
Q ss_pred CCCCCcccccccCCCCCCCccchHhHHHHhcCCCcHHHHHHHHHHHhcCCEEEEEcCCCCcHH--HHHHHHHHhccccCC
Q 006122 17 DEEGGVVFLSSSLSSASSIGYGYASIEKQRQRLPVYKYRTAILYLVETHATTIIVGETGSGKT--TQIPQYLKEAGWADG 94 (660)
Q Consensus 17 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lPi~~~~~~i~~~l~~~~~vii~apTGsGKT--~~ip~~l~~~~~~~~ 94 (660)
..+....+.+++|.++-+.+..+..+.+.....|-..+.+.|.-++ .+++++..|..|+||| +.+|.+-........
T Consensus 75 ~t~DVt~TkG~efEd~~Lkr~LLmgIfe~G~ekPSPiQeesIPiaL-tGrdiLaRaKNGTGKT~a~~IP~Lekid~~~~~ 153 (459)
T KOG0326|consen 75 KTEDVTATKGNEFEDYCLKRELLMGIFEKGFEKPSPIQEESIPIAL-TGRDILARAKNGTGKTAAYCIPVLEKIDPKKNV 153 (459)
T ss_pred cccccccccCccHHHhhhhHHHHHHHHHhccCCCCCccccccceee-cchhhhhhccCCCCCccceechhhhhcCccccc
Confidence 3455566788899999999999999999988888766666655554 6777999999999999 888977655543344
Q ss_pred CeEEEEeCchHHHHH--HHHHHHHHHhCCeeeeEEeeeeecccc-CCCCCceEEEechHHHHHHHhcCCC-CCCCcEEEE
Q 006122 95 GRVIACTQPRRLAVQ--AVASRVAEEMGVKVGEEVGYTIRFEDF-TNKDLTAIKFLTDGVLLREMMDDPL-LTKYSVIMV 170 (660)
Q Consensus 95 ~~~i~v~p~r~la~~--~~~~~~~~~~~~~~~~~vg~~~~~~~~-~~~~~~~I~v~T~~~ll~~l~~~~~-l~~~~~iIi 170 (660)
-+.++++|+|+||.| ++..++++.+++.+...+|...-.++. ...+..+++++|||++++....... +++...+|+
T Consensus 154 IQ~~ilVPtrelALQtSqvc~~lskh~~i~vmvttGGT~lrDDI~Rl~~~VH~~vgTPGRIlDL~~KgVa~ls~c~~lV~ 233 (459)
T KOG0326|consen 154 IQAIILVPTRELALQTSQVCKELSKHLGIKVMVTTGGTSLRDDIMRLNQTVHLVVGTPGRILDLAKKGVADLSDCVILVM 233 (459)
T ss_pred eeEEEEeecchhhHHHHHHHHHHhcccCeEEEEecCCcccccceeeecCceEEEEcCChhHHHHHhcccccchhceEEEe
Confidence 567999999999998 889999999999998888865444433 3344789999999999999877655 999999999
Q ss_pred eCCCcCCcChhHHHHHHHHHHHhcCCceEEEeecccc--hHHHHHHhhcCCCCCCCcccccCCCCCCeEEEECC--cccc
Q 006122 171 DEAHERSISTDILLGLLKKIQRCRSDLRLIISSATIE--AKSMSAFFHARKGRRGLEGVELVPRLEPAILSVEG--RGFN 246 (660)
Q Consensus 171 DE~Her~~~~d~ll~~l~~~~~~~~~~kii~~SAT~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~ 246 (660)
|||+ ..++.||...+-+.+....++.|+++.|||.+ +..|.+-.-..| ..+..-. ....
T Consensus 234 DEAD-KlLs~~F~~~~e~li~~lP~~rQillySATFP~tVk~Fm~~~l~kP----------------y~INLM~eLtl~G 296 (459)
T KOG0326|consen 234 DEAD-KLLSVDFQPIVEKLISFLPKERQILLYSATFPLTVKGFMDRHLKKP----------------YEINLMEELTLKG 296 (459)
T ss_pred chhh-hhhchhhhhHHHHHHHhCCccceeeEEecccchhHHHHHHHhccCc----------------ceeehhhhhhhcc
Confidence 9999 57788888887777777888999999999984 333433222222 1222211 1234
Q ss_pred ceEEecCCCchhHHHHHHHHHHHHHhcCCCCcEEEEcCCHHHHHHHHHHHHHHhhhccCCCCCeEEEEccCCCCHHHHhh
Q 006122 247 VQIHYVEEPVSDYVQAAVSTVLLIHDKEPPGDILVFLTGQDDIDATIQLLTEEARTSKKNSSGLIILPLYSGLSRAEQEQ 326 (660)
Q Consensus 247 v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iLVF~~~~~~i~~l~~~L~~~~~~~~~~~~~~~v~~lh~~l~~~~r~~ 326 (660)
|..+|........+... ..+...-.-.+.+|||++.+.+|.+|+.+.+. ++...++|+.|-++.|.+
T Consensus 297 vtQyYafV~e~qKvhCL----ntLfskLqINQsIIFCNS~~rVELLAkKITel---------GyscyyiHakM~Q~hRNr 363 (459)
T KOG0326|consen 297 VTQYYAFVEERQKVHCL----NTLFSKLQINQSIIFCNSTNRVELLAKKITEL---------GYSCYYIHAKMAQEHRNR 363 (459)
T ss_pred hhhheeeechhhhhhhH----HHHHHHhcccceEEEeccchHhHHHHHHHHhc---------cchhhHHHHHHHHhhhhh
Confidence 56666554443332221 12222234456899999999999999999887 899999999999999999
Q ss_pred hcCCCCCCCcEEEEeCCCcccccCCCCeEEEEeCCCccceeecCCCCcccceeeecCHHhHHHhhcccCCC-CCcEEEEc
Q 006122 327 VFSPTPRGKRKVVISTNIAETSLTLEGIVYVVDSGFSKQRFYNPISDIENLVVAPISKASARQRAGRAGRV-RPGKCYRL 405 (660)
Q Consensus 327 v~~~f~~g~~~vlvaT~i~e~Gidip~v~~VId~g~~k~~~~~~~~~~~~l~~~~~s~~~~~QR~GRaGR~-~~G~~~~l 405 (660)
+|..|++|..+.+|||+.+.+|||+++|++||++++ |-+.++|.||+||+||. ..|.++.|
T Consensus 364 VFHdFr~G~crnLVctDL~TRGIDiqavNvVINFDf------------------pk~aEtYLHRIGRsGRFGhlGlAInL 425 (459)
T KOG0326|consen 364 VFHDFRNGKCRNLVCTDLFTRGIDIQAVNVVINFDF------------------PKNAETYLHRIGRSGRFGHLGLAINL 425 (459)
T ss_pred hhhhhhccccceeeehhhhhcccccceeeEEEecCC------------------CCCHHHHHHHccCCccCCCcceEEEE
Confidence 999999999999999999999999999999999988 88899999999999999 89999999
Q ss_pred cChHHh
Q 006122 406 YTEEYF 411 (660)
Q Consensus 406 ~~~~~~ 411 (660)
++-++-
T Consensus 426 ityedr 431 (459)
T KOG0326|consen 426 ITYEDR 431 (459)
T ss_pred Eehhhh
Confidence 985543
No 39
>TIGR00614 recQ_fam ATP-dependent DNA helicase, RecQ family. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=100.00 E-value=1.3e-35 Score=324.17 Aligned_cols=310 Identities=16% Similarity=0.192 Sum_probs=215.0
Q ss_pred cHHHHHHHHHHHhcCCEEEEEcCCCCcHH--HHHHHHHHhccccCCCeEEEEeCchHHHHHHHHHHHHHHhCCeeeeEEe
Q 006122 51 VYKYRTAILYLVETHATTIIVGETGSGKT--TQIPQYLKEAGWADGGRVIACTQPRRLAVQAVASRVAEEMGVKVGEEVG 128 (660)
Q Consensus 51 i~~~~~~i~~~l~~~~~vii~apTGsGKT--~~ip~~l~~~~~~~~~~~i~v~p~r~la~~~~~~~~~~~~~~~~~~~vg 128 (660)
..+.|.+++.++.+++++++++||||||| +++|.+.. ++.+|+++|+++|+.+++.+ + ...+.......|
T Consensus 12 ~r~~Q~~ai~~~l~g~dvlv~apTGsGKTl~y~lp~l~~------~~~~lVi~P~~~L~~dq~~~-l-~~~gi~~~~l~~ 83 (470)
T TIGR00614 12 FRPVQLEVINAVLLGRDCFVVMPTGGGKSLCYQLPALCS------DGITLVISPLISLMEDQVLQ-L-KASGIPATFLNS 83 (470)
T ss_pred CCHHHHHHHHHHHcCCCEEEEcCCCCcHhHHHHHHHHHc------CCcEEEEecHHHHHHHHHHH-H-HHcCCcEEEEeC
Confidence 34578888999989999999999999999 67776542 34679999999998876554 2 345666554444
Q ss_pred eeeec------cccCCCCCceEEEechHHHHHHH--hcCC-CCCCCcEEEEeCCCcCCcC-hhHHHH--HHHHHHHhcCC
Q 006122 129 YTIRF------EDFTNKDLTAIKFLTDGVLLREM--MDDP-LLTKYSVIMVDEAHERSIS-TDILLG--LLKKIQRCRSD 196 (660)
Q Consensus 129 ~~~~~------~~~~~~~~~~I~v~T~~~ll~~l--~~~~-~l~~~~~iIiDE~Her~~~-~d~ll~--~l~~~~~~~~~ 196 (660)
..... ...... ..+|+|+||+.+.... .... ...++++|||||||..+-+ .++... .+..+....++
T Consensus 84 ~~~~~~~~~i~~~~~~~-~~~il~~TPe~l~~~~~~~~~l~~~~~i~~iViDEaH~i~~~g~~fr~~~~~l~~l~~~~~~ 162 (470)
T TIGR00614 84 SQSKEQQKNVLTDLKDG-KIKLLYVTPEKCSASNRLLQTLEERKGITLIAVDEAHCISQWGHDFRPDYKALGSLKQKFPN 162 (470)
T ss_pred CCCHHHHHHHHHHHhcC-CCCEEEECHHHHcCchhHHHHHHhcCCcCEEEEeCCcccCccccccHHHHHHHHHHHHHcCC
Confidence 32211 111122 5899999999875321 1111 3678999999999954422 223222 23345556688
Q ss_pred ceEEEeecccchHHHHHHhhcCCCCCCCcccccCCCCCCeEEEECCccccceEEecCCCchhHHHHHHHHHHHHHh-cCC
Q 006122 197 LRLIISSATIEAKSMSAFFHARKGRRGLEGVELVPRLEPAILSVEGRGFNVQIHYVEEPVSDYVQAAVSTVLLIHD-KEP 275 (660)
Q Consensus 197 ~kii~~SAT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~-~~~ 275 (660)
.+++++|||++.....+........ .+.++...-...++....... ..+.... +..... ...
T Consensus 163 ~~~l~lTAT~~~~~~~di~~~l~l~------------~~~~~~~s~~r~nl~~~v~~~-~~~~~~~----l~~~l~~~~~ 225 (470)
T TIGR00614 163 VPIMALTATASPSVREDILRQLNLK------------NPQIFCTSFDRPNLYYEVRRK-TPKILED----LLRFIRKEFK 225 (470)
T ss_pred CceEEEecCCCHHHHHHHHHHcCCC------------CCcEEeCCCCCCCcEEEEEeC-CccHHHH----HHHHHHHhcC
Confidence 9999999999665433332221100 000111111111111111111 1122222 222222 334
Q ss_pred CCcEEEEcCCHHHHHHHHHHHHHHhhhccCCCCCeEEEEccCCCCHHHHhhhcCCCCCCCcEEEEeCCCcccccCCCCeE
Q 006122 276 PGDILVFLTGQDDIDATIQLLTEEARTSKKNSSGLIILPLYSGLSRAEQEQVFSPTPRGKRKVVISTNIAETSLTLEGIV 355 (660)
Q Consensus 276 ~~~iLVF~~~~~~i~~l~~~L~~~~~~~~~~~~~~~v~~lh~~l~~~~r~~v~~~f~~g~~~vlvaT~i~e~Gidip~v~ 355 (660)
+..+||||+++++++.+++.|.+. ++.+..+||+|++++|..+++.|.+|+.+|||||+++++|||+|+|+
T Consensus 226 ~~~~IIF~~s~~~~e~la~~L~~~---------g~~~~~~H~~l~~~eR~~i~~~F~~g~~~vLVaT~~~~~GID~p~V~ 296 (470)
T TIGR00614 226 GKSGIIYCPSRKKSEQVTASLQNL---------GIAAGAYHAGLEISARDDVHHKFQRDEIQVVVATVAFGMGINKPDVR 296 (470)
T ss_pred CCceEEEECcHHHHHHHHHHHHhc---------CCCeeEeeCCCCHHHHHHHHHHHHcCCCcEEEEechhhccCCcccce
Confidence 456799999999999999999875 78899999999999999999999999999999999999999999999
Q ss_pred EEEeCCCccceeecCCCCcccceeeecCHHhHHHhhcccCCC-CCcEEEEccChHHhhh
Q 006122 356 YVVDSGFSKQRFYNPISDIENLVVAPISKASARQRAGRAGRV-RPGKCYRLYTEEYFVK 413 (660)
Q Consensus 356 ~VId~g~~k~~~~~~~~~~~~l~~~~~s~~~~~QR~GRaGR~-~~G~~~~l~~~~~~~~ 413 (660)
+||+++. |.|..+|+||+|||||. .+|.|+.+|++.+...
T Consensus 297 ~VI~~~~------------------P~s~~~y~Qr~GRaGR~G~~~~~~~~~~~~d~~~ 337 (470)
T TIGR00614 297 FVIHYSL------------------PKSMESYYQESGRAGRDGLPSECHLFYAPADINR 337 (470)
T ss_pred EEEEeCC------------------CCCHHHHHhhhcCcCCCCCCceEEEEechhHHHH
Confidence 9999887 88999999999999999 8999999999876653
No 40
>PLN03137 ATP-dependent DNA helicase; Q4-like; Provisional
Probab=100.00 E-value=8.1e-36 Score=335.73 Aligned_cols=309 Identities=13% Similarity=0.139 Sum_probs=219.7
Q ss_pred CCcHHHHHHHHHHHhcCCEEEEEcCCCCcHH--HHHHHHHHhccccCCCeEEEEeCchHHHHHHHHHHHHHHhCCeeeeE
Q 006122 49 LPVYKYRTAILYLVETHATTIIVGETGSGKT--TQIPQYLKEAGWADGGRVIACTQPRRLAVQAVASRVAEEMGVKVGEE 126 (660)
Q Consensus 49 lPi~~~~~~i~~~l~~~~~vii~apTGsGKT--~~ip~~l~~~~~~~~~~~i~v~p~r~la~~~~~~~~~~~~~~~~~~~ 126 (660)
--..+.|.+++.++..++++++.+|||+||| +++|.++. .+.+||++|+++|+.+++.+.. ..++.....
T Consensus 459 ~sFRp~Q~eaI~aiL~GrDVLVimPTGSGKSLcYQLPAL~~------~GiTLVISPLiSLmqDQV~~L~--~~GI~Aa~L 530 (1195)
T PLN03137 459 HSFRPNQREIINATMSGYDVFVLMPTGGGKSLTYQLPALIC------PGITLVISPLVSLIQDQIMNLL--QANIPAASL 530 (1195)
T ss_pred CCCCHHHHHHHHHHHcCCCEEEEcCCCccHHHHHHHHHHHc------CCcEEEEeCHHHHHHHHHHHHH--hCCCeEEEE
Confidence 3467789999999999999999999999999 78887653 3468999999999887766643 346666555
Q ss_pred Eeeeeeccc------cCC-CCCceEEEechHHHHH------HHhcCCCCCCCcEEEEeCCCcCCcC-hhHHHHHH--HHH
Q 006122 127 VGYTIRFED------FTN-KDLTAIKFLTDGVLLR------EMMDDPLLTKYSVIMVDEAHERSIS-TDILLGLL--KKI 190 (660)
Q Consensus 127 vg~~~~~~~------~~~-~~~~~I~v~T~~~ll~------~l~~~~~l~~~~~iIiDE~Her~~~-~d~ll~~l--~~~ 190 (660)
.|.....+. ... .+..+|+|+||++|.. .+..-.....+++|||||||+.+-+ .||...+. ..+
T Consensus 531 ~s~~s~~eq~~ilr~l~s~~g~~~ILyvTPERL~~~d~ll~~L~~L~~~~~LslIVIDEAHcVSqWGhDFRpdYr~L~~L 610 (1195)
T PLN03137 531 SAGMEWAEQLEILQELSSEYSKYKLLYVTPEKVAKSDSLLRHLENLNSRGLLARFVIDEAHCVSQWGHDFRPDYQGLGIL 610 (1195)
T ss_pred ECCCCHHHHHHHHHHHHhcCCCCCEEEEChHHhhcchHHHHHHHhhhhccccceeccCcchhhhhcccchHHHHHHHHHH
Confidence 553221111 111 1268999999999752 2211112455899999999964432 24444332 335
Q ss_pred HHhcCCceEEEeecccchHH---HHHHhhcCCCCCCCcccccCCCCCCeEEEECCccccceEEecCCCchhHHHHHHHHH
Q 006122 191 QRCRSDLRLIISSATIEAKS---MSAFFHARKGRRGLEGVELVPRLEPAILSVEGRGFNVQIHYVEEPVSDYVQAAVSTV 267 (660)
Q Consensus 191 ~~~~~~~kii~~SAT~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~ 267 (660)
....++.+++++|||++... +.+.++... + .+...+...| .++|...+.... ....+
T Consensus 611 r~~fp~vPilALTATAT~~V~eDI~~~L~l~~---------------~-~vfr~Sf~Rp-NL~y~Vv~k~kk---~le~L 670 (1195)
T PLN03137 611 KQKFPNIPVLALTATATASVKEDVVQALGLVN---------------C-VVFRQSFNRP-NLWYSVVPKTKK---CLEDI 670 (1195)
T ss_pred HHhCCCCCeEEEEecCCHHHHHHHHHHcCCCC---------------c-EEeecccCcc-ceEEEEeccchh---HHHHH
Confidence 55667889999999996543 334433211 0 1111111111 222322221111 11222
Q ss_pred HHHHh-cCCCCcEEEEcCCHHHHHHHHHHHHHHhhhccCCCCCeEEEEccCCCCHHHHhhhcCCCCCCCcEEEEeCCCcc
Q 006122 268 LLIHD-KEPPGDILVFLTGQDDIDATIQLLTEEARTSKKNSSGLIILPLYSGLSRAEQEQVFSPTPRGKRKVVISTNIAE 346 (660)
Q Consensus 268 ~~~~~-~~~~~~iLVF~~~~~~i~~l~~~L~~~~~~~~~~~~~~~v~~lh~~l~~~~r~~v~~~f~~g~~~vlvaT~i~e 346 (660)
..+.. ....+..||||.++++++.++..|.+. ++.+.+|||+|++++|..+++.|.+|+.+|||||++++
T Consensus 671 ~~~I~~~~~~esgIIYC~SRke~E~LAe~L~~~---------Gika~~YHAGLs~eeR~~vqe~F~~Gei~VLVATdAFG 741 (1195)
T PLN03137 671 DKFIKENHFDECGIIYCLSRMDCEKVAERLQEF---------GHKAAFYHGSMDPAQRAFVQKQWSKDEINIICATVAFG 741 (1195)
T ss_pred HHHHHhcccCCCceeEeCchhHHHHHHHHHHHC---------CCCeeeeeCCCCHHHHHHHHHHHhcCCCcEEEEechhh
Confidence 22222 223567899999999999999999875 78899999999999999999999999999999999999
Q ss_pred cccCCCCeEEEEeCCCccceeecCCCCcccceeeecCHHhHHHhhcccCCC-CCcEEEEccChHHhh
Q 006122 347 TSLTLEGIVYVVDSGFSKQRFYNPISDIENLVVAPISKASARQRAGRAGRV-RPGKCYRLYTEEYFV 412 (660)
Q Consensus 347 ~Gidip~v~~VId~g~~k~~~~~~~~~~~~l~~~~~s~~~~~QR~GRaGR~-~~G~~~~l~~~~~~~ 412 (660)
+|||+|+|++||++++ |.|..+|+||+|||||. .+|.|+.+|+..++.
T Consensus 742 MGIDkPDVR~VIHydl------------------PkSiEsYyQriGRAGRDG~~g~cILlys~~D~~ 790 (1195)
T PLN03137 742 MGINKPDVRFVIHHSL------------------PKSIEGYHQECGRAGRDGQRSSCVLYYSYSDYI 790 (1195)
T ss_pred cCCCccCCcEEEEcCC------------------CCCHHHHHhhhcccCCCCCCceEEEEecHHHHH
Confidence 9999999999999888 88999999999999999 899999999977654
No 41
>PRK11057 ATP-dependent DNA helicase RecQ; Provisional
Probab=100.00 E-value=3.6e-35 Score=328.90 Aligned_cols=318 Identities=16% Similarity=0.183 Sum_probs=222.0
Q ss_pred hHHHHhcCC-CcHHHHHHHHHHHhcCCEEEEEcCCCCcHH--HHHHHHHHhccccCCCeEEEEeCchHHHHHHHHHHHHH
Q 006122 41 SIEKQRQRL-PVYKYRTAILYLVETHATTIIVGETGSGKT--TQIPQYLKEAGWADGGRVIACTQPRRLAVQAVASRVAE 117 (660)
Q Consensus 41 ~~~~~~~~l-Pi~~~~~~i~~~l~~~~~vii~apTGsGKT--~~ip~~l~~~~~~~~~~~i~v~p~r~la~~~~~~~~~~ 117 (660)
.+++....+ ...+.|.+++.++..++++++++|||+||| +++|.+.. .+.+|+++|+++|+.+++... .
T Consensus 15 ~~l~~~fG~~~~r~~Q~~ai~~il~g~dvlv~apTGsGKTl~y~lpal~~------~g~tlVisPl~sL~~dqv~~l--~ 86 (607)
T PRK11057 15 QVLQETFGYQQFRPGQQEIIDAVLSGRDCLVVMPTGGGKSLCYQIPALVL------DGLTLVVSPLISLMKDQVDQL--L 86 (607)
T ss_pred HHHHHHcCCCCCCHHHHHHHHHHHcCCCEEEEcCCCchHHHHHHHHHHHc------CCCEEEEecHHHHHHHHHHHH--H
Confidence 344444333 355789999999999999999999999999 67786643 245799999999988866542 3
Q ss_pred HhCCeeeeEEeeeeec------cccCCCCCceEEEechHHHHHHH-hcCCCCCCCcEEEEeCCCcCCcCh-hHH--HHHH
Q 006122 118 EMGVKVGEEVGYTIRF------EDFTNKDLTAIKFLTDGVLLREM-MDDPLLTKYSVIMVDEAHERSIST-DIL--LGLL 187 (660)
Q Consensus 118 ~~~~~~~~~vg~~~~~------~~~~~~~~~~I~v~T~~~ll~~l-~~~~~l~~~~~iIiDE~Her~~~~-d~l--l~~l 187 (660)
..+.......+..... ...... ..+++|+||+.+.... .......++++|||||||+..-+. ++. ...+
T Consensus 87 ~~gi~~~~~~s~~~~~~~~~~~~~~~~g-~~~il~~tPe~l~~~~~~~~l~~~~l~~iVIDEaH~i~~~G~~fr~~y~~L 165 (607)
T PRK11057 87 ANGVAAACLNSTQTREQQLEVMAGCRTG-QIKLLYIAPERLMMDNFLEHLAHWNPALLAVDEAHCISQWGHDFRPEYAAL 165 (607)
T ss_pred HcCCcEEEEcCCCCHHHHHHHHHHHhCC-CCcEEEEChHHhcChHHHHHHhhCCCCEEEEeCccccccccCcccHHHHHH
Confidence 4565554433322111 111222 5789999999987432 222224578999999999654322 222 2334
Q ss_pred HHHHHhcCCceEEEeecccchHHHHHHhhcCCCCCCCcccccCCCCCCeEEEECCccccceEEecCCCchhHHHHHHHHH
Q 006122 188 KKIQRCRSDLRLIISSATIEAKSMSAFFHARKGRRGLEGVELVPRLEPAILSVEGRGFNVQIHYVEEPVSDYVQAAVSTV 267 (660)
Q Consensus 188 ~~~~~~~~~~kii~~SAT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~ 267 (660)
..+....++.+++++|||++.....+++...... .+.+.......| ...|......... ..+
T Consensus 166 ~~l~~~~p~~~~v~lTAT~~~~~~~di~~~l~l~-------------~~~~~~~~~~r~-nl~~~v~~~~~~~----~~l 227 (607)
T PRK11057 166 GQLRQRFPTLPFMALTATADDTTRQDIVRLLGLN-------------DPLIQISSFDRP-NIRYTLVEKFKPL----DQL 227 (607)
T ss_pred HHHHHhCCCCcEEEEecCCChhHHHHHHHHhCCC-------------CeEEEECCCCCC-cceeeeeeccchH----HHH
Confidence 4555567889999999999655433332211100 002222221111 1111111111111 223
Q ss_pred HHHHhcCCCCcEEEEcCCHHHHHHHHHHHHHHhhhccCCCCCeEEEEccCCCCHHHHhhhcCCCCCCCcEEEEeCCCccc
Q 006122 268 LLIHDKEPPGDILVFLTGQDDIDATIQLLTEEARTSKKNSSGLIILPLYSGLSRAEQEQVFSPTPRGKRKVVISTNIAET 347 (660)
Q Consensus 268 ~~~~~~~~~~~iLVF~~~~~~i~~l~~~L~~~~~~~~~~~~~~~v~~lh~~l~~~~r~~v~~~f~~g~~~vlvaT~i~e~ 347 (660)
........++++||||+++++++.+++.|.+. ++.+..+||+|++++|.++++.|.+|..+|||||+++++
T Consensus 228 ~~~l~~~~~~~~IIFc~tr~~~e~la~~L~~~---------g~~v~~~Ha~l~~~~R~~i~~~F~~g~~~VLVaT~a~~~ 298 (607)
T PRK11057 228 MRYVQEQRGKSGIIYCNSRAKVEDTAARLQSR---------GISAAAYHAGLDNDVRADVQEAFQRDDLQIVVATVAFGM 298 (607)
T ss_pred HHHHHhcCCCCEEEEECcHHHHHHHHHHHHhC---------CCCEEEecCCCCHHHHHHHHHHHHCCCCCEEEEechhhc
Confidence 33334456678999999999999999999875 788999999999999999999999999999999999999
Q ss_pred ccCCCCeEEEEeCCCccceeecCCCCcccceeeecCHHhHHHhhcccCCC-CCcEEEEccChHHhh
Q 006122 348 SLTLEGIVYVVDSGFSKQRFYNPISDIENLVVAPISKASARQRAGRAGRV-RPGKCYRLYTEEYFV 412 (660)
Q Consensus 348 Gidip~v~~VId~g~~k~~~~~~~~~~~~l~~~~~s~~~~~QR~GRaGR~-~~G~~~~l~~~~~~~ 412 (660)
|||+|+|++||++++ |.|..+|+||+|||||. .+|.|+.+|+..+..
T Consensus 299 GIDip~V~~VI~~d~------------------P~s~~~y~Qr~GRaGR~G~~~~~ill~~~~d~~ 346 (607)
T PRK11057 299 GINKPNVRFVVHFDI------------------PRNIESYYQETGRAGRDGLPAEAMLFYDPADMA 346 (607)
T ss_pred cCCCCCcCEEEEeCC------------------CCCHHHHHHHhhhccCCCCCceEEEEeCHHHHH
Confidence 999999999999877 88999999999999999 789999999987654
No 42
>KOG0342 consensus ATP-dependent RNA helicase pitchoune [RNA processing and modification]
Probab=100.00 E-value=1.8e-35 Score=299.20 Aligned_cols=338 Identities=19% Similarity=0.229 Sum_probs=250.9
Q ss_pred cCCCCCCCccchHhHHHHhcCCCcHHHHHHHHHHHhcCCEEEEEcCCCCcHH--HHHHHHHH--hcccc--CCCeEEEEe
Q 006122 28 SLSSASSIGYGYASIEKQRQRLPVYKYRTAILYLVETHATTIIVGETGSGKT--TQIPQYLK--EAGWA--DGGRVIACT 101 (660)
Q Consensus 28 ~~~~~~~~~~~~~~~~~~~~~lPi~~~~~~i~~~l~~~~~vii~apTGsGKT--~~ip~~l~--~~~~~--~~~~~i~v~ 101 (660)
-|..++++...+.++.+.... -....|+..+.-+..++++++.|.|||||| +++|.+-. ..... .+..+++|.
T Consensus 83 ~f~~~~LS~~t~kAi~~~GF~-~MT~VQ~~ti~pll~gkDvl~~AKTGtGKTlAFLiPaie~l~k~~~~~r~~~~vlIi~ 161 (543)
T KOG0342|consen 83 RFEEGSLSPLTLKAIKEMGFE-TMTPVQQKTIPPLLEGKDVLAAAKTGTGKTLAFLLPAIELLRKLKFKPRNGTGVLIIC 161 (543)
T ss_pred HhhccccCHHHHHHHHhcCcc-chhHHHHhhcCccCCCccceeeeccCCCceeeehhHHHHHHHhcccCCCCCeeEEEec
Confidence 477888999888888665433 245556666777778889999999999999 88886533 22222 234579999
Q ss_pred CchHHHHH--HHHHHHHHHh-CCeeeeEEeeeeec-cccCCCCCceEEEechHHHHHHHhcCCC--CCCCcEEEEeCCCc
Q 006122 102 QPRRLAVQ--AVASRVAEEM-GVKVGEEVGYTIRF-EDFTNKDLTAIKFLTDGVLLREMMDDPL--LTKYSVIMVDEAHE 175 (660)
Q Consensus 102 p~r~la~~--~~~~~~~~~~-~~~~~~~vg~~~~~-~~~~~~~~~~I~v~T~~~ll~~l~~~~~--l~~~~~iIiDE~He 175 (660)
|+|+||.| .+++.+-+.. +..++..+|...+. +.......++|+|+|||+|++++.+.+. ..+..++|+|||+
T Consensus 162 PTRELA~Q~~~eak~Ll~~h~~~~v~~viGG~~~~~e~~kl~k~~niliATPGRLlDHlqNt~~f~~r~~k~lvlDEAD- 240 (543)
T KOG0342|consen 162 PTRELAMQIFAEAKELLKYHESITVGIVIGGNNFSVEADKLVKGCNILIATPGRLLDHLQNTSGFLFRNLKCLVLDEAD- 240 (543)
T ss_pred ccHHHHHHHHHHHHHHHhhCCCcceEEEeCCccchHHHHHhhccccEEEeCCchHHhHhhcCCcchhhccceeEeecch-
Confidence 99999999 4455566665 77778888754332 2212222699999999999999987653 7778999999999
Q ss_pred CCcChhHHHHHHHHHHHhcCCceEEEeecccchHHHHHHhhcCCCCCCCcccccCCCCCCeEEEECCcc-----ccceEE
Q 006122 176 RSISTDILLGLLKKIQRCRSDLRLIISSATIEAKSMSAFFHARKGRRGLEGVELVPRLEPAILSVEGRG-----FNVQIH 250 (660)
Q Consensus 176 r~~~~d~ll~~l~~~~~~~~~~kii~~SAT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~v~~~ 250 (660)
|.++..|-..+.+.+.......|..++|||.+.+ +.+........ .+..+.+.... ..++.-
T Consensus 241 rlLd~GF~~di~~Ii~~lpk~rqt~LFSAT~~~k-V~~l~~~~L~~------------d~~~v~~~d~~~~~The~l~Qg 307 (543)
T KOG0342|consen 241 RLLDIGFEEDVEQIIKILPKQRQTLLFSATQPSK-VKDLARGALKR------------DPVFVNVDDGGERETHERLEQG 307 (543)
T ss_pred hhhhcccHHHHHHHHHhccccceeeEeeCCCcHH-HHHHHHHhhcC------------CceEeecCCCCCcchhhcccce
Confidence 8999999888888888888899999999998543 22222221100 01122221111 123444
Q ss_pred ecCCCchhHHHHHHHHHHHHHhcC-CCCcEEEEcCCHHHHHHHHHHHHHHhhhccCCCCCeEEEEccCCCCHHHHhhhcC
Q 006122 251 YVEEPVSDYVQAAVSTVLLIHDKE-PPGDILVFLTGQDDIDATIQLLTEEARTSKKNSSGLIILPLYSGLSRAEQEQVFS 329 (660)
Q Consensus 251 ~~~~~~~~~~~~~~~~~~~~~~~~-~~~~iLVF~~~~~~i~~l~~~L~~~~~~~~~~~~~~~v~~lh~~l~~~~r~~v~~ 329 (660)
|.-.+..... ..+....+.. ...+|+|||+|...+..+++.|... .+.|..+||++++..|..++.
T Consensus 308 yvv~~~~~~f----~ll~~~LKk~~~~~KiiVF~sT~~~vk~~~~lL~~~---------dlpv~eiHgk~~Q~kRT~~~~ 374 (543)
T KOG0342|consen 308 YVVAPSDSRF----SLLYTFLKKNIKRYKIIVFFSTCMSVKFHAELLNYI---------DLPVLEIHGKQKQNKRTSTFF 374 (543)
T ss_pred EEeccccchH----HHHHHHHHHhcCCceEEEEechhhHHHHHHHHHhhc---------CCchhhhhcCCcccccchHHH
Confidence 4444433332 2222222222 2378999999999999999999854 889999999999999999999
Q ss_pred CCCCCCcEEEEeCCCcccccCCCCeEEEEeCCCccceeecCCCCcccceeeecCHHhHHHhhcccCCC-CCcEEEEccCh
Q 006122 330 PTPRGKRKVVISTNIAETSLTLEGIVYVVDSGFSKQRFYNPISDIENLVVAPISKASARQRAGRAGRV-RPGKCYRLYTE 408 (660)
Q Consensus 330 ~f~~g~~~vlvaT~i~e~Gidip~v~~VId~g~~k~~~~~~~~~~~~l~~~~~s~~~~~QR~GRaGR~-~~G~~~~l~~~ 408 (660)
.|.+.+.-||||||++++|+|+|+|+.||.+|. |-...+|+||+||+||. +.|..+.+..+
T Consensus 375 ~F~kaesgIL~cTDVaARGlD~P~V~~VvQ~~~------------------P~d~~~YIHRvGRTaR~gk~G~alL~l~p 436 (543)
T KOG0342|consen 375 EFCKAESGILVCTDVAARGLDIPDVDWVVQYDP------------------PSDPEQYIHRVGRTAREGKEGKALLLLAP 436 (543)
T ss_pred HHhhcccceEEecchhhccCCCCCceEEEEeCC------------------CCCHHHHHHHhccccccCCCceEEEEeCh
Confidence 999999999999999999999999999999776 88899999999999999 88999999887
Q ss_pred HHh
Q 006122 409 EYF 411 (660)
Q Consensus 409 ~~~ 411 (660)
++.
T Consensus 437 ~El 439 (543)
T KOG0342|consen 437 WEL 439 (543)
T ss_pred hHH
Confidence 654
No 43
>KOG0952 consensus DNA/RNA helicase MER3/SLH1, DEAD-box superfamily [RNA processing and modification]
Probab=100.00 E-value=1.1e-33 Score=307.65 Aligned_cols=475 Identities=17% Similarity=0.177 Sum_probs=307.0
Q ss_pred HHHHH-HHHHhcCCEEEEEcCCCCcHHHHHHHHHHhccc---------cCCCeEEEEeCchHHHHHHHHHHHHHH--hCC
Q 006122 54 YRTAI-LYLVETHATTIIVGETGSGKTTQIPQYLKEAGW---------ADGGRVIACTQPRRLAVQAVASRVAEE--MGV 121 (660)
Q Consensus 54 ~~~~i-~~~l~~~~~vii~apTGsGKT~~ip~~l~~~~~---------~~~~~~i~v~p~r~la~~~~~~~~~~~--~~~ 121 (660)
.|.++ ..+..++.+.+|+||||||||-++..-++.... .++-++||++|.++||++.+.+.-.+. +|.
T Consensus 114 iQS~vFp~aY~SneNMLIcAPTGsGKT~la~L~ILr~ik~~~~~~~i~k~~fKiVYIaPmKALa~Em~~~~~kkl~~~gi 193 (1230)
T KOG0952|consen 114 IQSEVFPVAYKSNENMLICAPTGSGKTVLAELCILRTIKEHEEQGDIAKDDFKIVYIAPMKALAAEMVDKFSKKLAPLGI 193 (1230)
T ss_pred HHHHhhhhhhcCCCCEEEECCCCCCchHHHHHHHHHHHHhhccccccccCCceEEEEechHHHHHHHHHHHhhhcccccc
Confidence 34333 345678899999999999999444433332211 134578999999999998665554443 388
Q ss_pred eeeeEEeeeeeccccCCCCCceEEEechHHHHHH---HhcC-CCCCCCcEEEEeCCC----cCCcChhHHHHHHHHHH-H
Q 006122 122 KVGEEVGYTIRFEDFTNKDLTAIKFLTDGVLLRE---MMDD-PLLTKYSVIMVDEAH----ERSISTDILLGLLKKIQ-R 192 (660)
Q Consensus 122 ~~~~~vg~~~~~~~~~~~~~~~I~v~T~~~ll~~---l~~~-~~l~~~~~iIiDE~H----er~~~~d~ll~~l~~~~-~ 192 (660)
.+++++|...-.... .. .++|+|+||+.+--. ...+ .+.+.+.+|||||+| +|+...+.+.+...+.. .
T Consensus 194 ~v~ELTGD~ql~~te-i~-~tqiiVTTPEKwDvvTRk~~~d~~l~~~V~LviIDEVHlLhd~RGpvlEtiVaRtlr~ves 271 (1230)
T KOG0952|consen 194 SVRELTGDTQLTKTE-IA-DTQIIVTTPEKWDVVTRKSVGDSALFSLVRLVIIDEVHLLHDDRGPVLETIVARTLRLVES 271 (1230)
T ss_pred eEEEecCcchhhHHH-HH-hcCEEEecccceeeeeeeeccchhhhhheeeEEeeeehhhcCcccchHHHHHHHHHHHHHh
Confidence 999999954332222 33 799999999987432 2222 247889999999999 67765554444443332 3
Q ss_pred hcCCceEEEeeccc-chHHHHHHhhcCCCCCCCcccccCCCCCCeEEEECCcccc--ceEEecCCCch--hH-----HHH
Q 006122 193 CRSDLRLIISSATI-EAKSMSAFFHARKGRRGLEGVELVPRLEPAILSVEGRGFN--VQIHYVEEPVS--DY-----VQA 262 (660)
Q Consensus 193 ~~~~~kii~~SAT~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--v~~~~~~~~~~--~~-----~~~ 262 (660)
....+|+|++|||+ |.++++.|+...+. .-++...++..| .+..+...... .. -+.
T Consensus 272 sqs~IRivgLSATlPN~eDvA~fL~vn~~--------------~glfsFd~~yRPvpL~~~~iG~k~~~~~~~~~~~d~~ 337 (1230)
T KOG0952|consen 272 SQSMIRIVGLSATLPNYEDVARFLRVNPY--------------AGLFSFDQRYRPVPLTQGFIGIKGKKNRQQKKNIDEV 337 (1230)
T ss_pred hhhheEEEEeeccCCCHHHHHHHhcCCCc--------------cceeeecccccccceeeeEEeeecccchhhhhhHHHH
Confidence 55789999999999 99999999987641 115555555444 34444332222 11 111
Q ss_pred HHHHHHHHHhcCCCCcEEEEcCCHHHHHHHHHHHHHHhhhccCC-----C---------CCeEEEEccCCCCHHHHhhhc
Q 006122 263 AVSTVLLIHDKEPPGDILVFLTGQDDIDATIQLLTEEARTSKKN-----S---------SGLIILPLYSGLSRAEQEQVF 328 (660)
Q Consensus 263 ~~~~~~~~~~~~~~~~iLVF~~~~~~i~~l~~~L~~~~~~~~~~-----~---------~~~~v~~lh~~l~~~~r~~v~ 328 (660)
....+...+ ..+.+++|||.++++..+.|+.|.+.....+.. . -...+..||+||..++|..++
T Consensus 338 ~~~kv~e~~--~~g~qVlvFvhsR~~Ti~tA~~l~~~a~~~g~~~~f~~~~~~k~l~elf~~g~~iHhAGm~r~DR~l~E 415 (1230)
T KOG0952|consen 338 CYDKVVEFL--QEGHQVLVFVHSRNETIRTAKKLRERAETNGEKDLFLPSPRNKQLKELFQQGMGIHHAGMLRSDRQLVE 415 (1230)
T ss_pred HHHHHHHHH--HcCCeEEEEEecChHHHHHHHHHHHHHHhcCcccccCCChhhHHHHHHHHhhhhhcccccchhhHHHHH
Confidence 223333333 357789999999999999999998876542211 1 124688999999999999999
Q ss_pred CCCCCCCcEEEEeCCCcccccCCCCeEEEEeCCCccceeecCCCCcccceeeecCHHhHHHhhcccCCC---CCcEEEEc
Q 006122 329 SPTPRGKRKVVISTNIAETSLTLEGIVYVVDSGFSKQRFYNPISDIENLVVAPISKASARQRAGRAGRV---RPGKCYRL 405 (660)
Q Consensus 329 ~~f~~g~~~vlvaT~i~e~Gidip~v~~VId~g~~k~~~~~~~~~~~~l~~~~~s~~~~~QR~GRaGR~---~~G~~~~l 405 (660)
+.|..|.++|++||.++++|+|+|+-.++| ..++.||+..|.-. ..+.-+..|..|||||. ..|..+.+
T Consensus 416 ~~F~~G~i~vL~cTaTLAwGVNLPA~aViI----KGT~~ydsskg~f~----dlgilDVlQifGRAGRPqFd~~G~giIi 487 (1230)
T KOG0952|consen 416 KEFKEGHIKVLCCTATLAWGVNLPAYAVII----KGTQVYDSSKGSFV----DLGILDVLQIFGRAGRPQFDSSGEGIII 487 (1230)
T ss_pred HHHhcCCceEEEecceeeeccCCcceEEEe----cCCcccccccCcee----eehHHHHHHHHhccCCCCCCCCceEEEE
Confidence 999999999999999999999999877777 34577998876432 56788899999999998 66877777
Q ss_pred cChHH---hhhhCCC--------------CCCCccccccchhHHHHHHHcCC--------CCccCC----CCC-CCCCH-
Q 006122 406 YTEEY---FVKEIPA--------------EGIPEMQRSNLVSCVIQLKALGI--------DNILGF----DWP-ASPPP- 454 (660)
Q Consensus 406 ~~~~~---~~~~~~~--------------~~~pei~~~~l~~~~l~l~~~~~--------~~~~~~----~~~-~~p~~- 454 (660)
-+.+. |.+.+.. .-..||-...+.++--.+.+++. .++..+ ..+ ..|..
T Consensus 488 Tt~dkl~~Y~sLl~~~~piES~~~~~L~dnLnAEi~LgTVt~VdeAVeWL~yTylYVRm~KNP~~Ygi~~~~l~~dp~l~ 567 (1230)
T KOG0952|consen 488 TTRDKLDHYESLLTGQNPIESQLLPCLIDNLNAEISLGTVTNVDEAVEWLKYTYLYVRMRKNPMAYGISYEELEPDPRLE 567 (1230)
T ss_pred ecccHHHHHHHHHcCCChhHHHHHHHHHHhhhhheeeceeecHHHHHHHhhceeEEEEeccChHHhhhhhhcccCCchHH
Confidence 66543 3331221 12233333222222223333321 122111 111 12222
Q ss_pred ----HHHHHHHHHHHHCCCC--CCC-C--CcchHHHHHhccCCCChhhhHHHHhhcc-cCchhHHHHHHhhcccCccccc
Q 006122 455 ----EAMIRALEVLYSLGVL--DDD-A--KLTSPTGFQVAEIPLEPMISKMILSSNE-LGCSEEIITISAVLSIQSIWVS 524 (660)
Q Consensus 455 ----~~~~~al~~L~~lgal--d~~-~--~lT~~lG~~~~~lpl~p~~~~~l~~~~~-~~c~~~~~~i~a~ls~~~~f~~ 524 (660)
+.+..++..|.+...| |.. | ..|+ +||.|+.+++..+..+.++.... +-..++++.|+++.++.+-.--
T Consensus 568 s~~~~l~~~~~~~L~~~qmi~~D~~t~~~~std-lGR~aS~yYik~ETme~~nn~~k~~~se~~iL~lis~aeEfs~ik~ 646 (1230)
T KOG0952|consen 568 SHRRELCLVAAMELDKVQMIRFDERTGYLKSTD-LGRVASNYYIKYETMETFNNLPKSFYSEDDILALISMAEEFSQIKV 646 (1230)
T ss_pred HHHHHHHHHHHHHhhhhheEEEecccceEcccc-hhhhhhhhhhhhHHHHHHHhcccccCCHHHHHHHHHhhHhhhhhhh
Confidence 2234466666555444 332 3 4685 99999999999999999999998 7778888888887766543222
Q ss_pred CcchHHHHHHHHH------hhcCCCCcHHHHHHHHHH
Q 006122 525 GRGAQKELDEAKL------RFAAAEGDHVTFLNIYKG 555 (660)
Q Consensus 525 ~~~~~~~~~~~~~------~~~~~~~D~~~~l~~~~~ 555 (660)
-.++.++.++... .|....|+--.++..|..
T Consensus 647 R~eE~k~l~el~~~~~~~~~~~~~~gk~nil~q~~Is 683 (1230)
T KOG0952|consen 647 REEEKKELKELNEDSCEKYPFGGEKGKVNILLQAYIS 683 (1230)
T ss_pred hhhhHHHHHHHHhcccccccccccchhHHHHHHhhhh
Confidence 2233334444322 233334677667766654
No 44
>TIGR01389 recQ ATP-dependent DNA helicase RecQ. The ATP-dependent DNA helicase RecQ of E. coli is about 600 residues long. This model represents bacterial proteins with a high degree of similarity in domain architecture and in primary sequence to E. coli RecQ. The model excludes eukaryotic and archaeal proteins with RecQ-like regions, as well as more distantly related bacterial helicases related to RecQ.
Probab=100.00 E-value=4.3e-34 Score=321.25 Aligned_cols=306 Identities=18% Similarity=0.179 Sum_probs=214.7
Q ss_pred cHHHHHHHHHHHhcCCEEEEEcCCCCcHH--HHHHHHHHhccccCCCeEEEEeCchHHHHHHHHHHHHHHhCCeeeeEEe
Q 006122 51 VYKYRTAILYLVETHATTIIVGETGSGKT--TQIPQYLKEAGWADGGRVIACTQPRRLAVQAVASRVAEEMGVKVGEEVG 128 (660)
Q Consensus 51 i~~~~~~i~~~l~~~~~vii~apTGsGKT--~~ip~~l~~~~~~~~~~~i~v~p~r~la~~~~~~~~~~~~~~~~~~~vg 128 (660)
..+.|.++++++..++++++++|||+||| +++|.++. ++..++++|.+.|+.+++.. + +..|..+....+
T Consensus 14 fr~~Q~~~i~~il~g~dvlv~~PTG~GKTl~y~lpal~~------~g~~lVisPl~sL~~dq~~~-l-~~~gi~~~~~~s 85 (591)
T TIGR01389 14 FRPGQEEIISHVLDGRDVLVVMPTGGGKSLCYQVPALLL------KGLTVVISPLISLMKDQVDQ-L-RAAGVAAAYLNS 85 (591)
T ss_pred CCHHHHHHHHHHHcCCCEEEEcCCCccHhHHHHHHHHHc------CCcEEEEcCCHHHHHHHHHH-H-HHcCCcEEEEeC
Confidence 45679999999999999999999999999 67776542 34578999999998887654 2 335666554433
Q ss_pred eeeecc-----ccCCCCCceEEEechHHHHHHHh-cCCCCCCCcEEEEeCCCcCCcCh-hHHH--HHHHHHHHhcCCceE
Q 006122 129 YTIRFE-----DFTNKDLTAIKFLTDGVLLREMM-DDPLLTKYSVIMVDEAHERSIST-DILL--GLLKKIQRCRSDLRL 199 (660)
Q Consensus 129 ~~~~~~-----~~~~~~~~~I~v~T~~~ll~~l~-~~~~l~~~~~iIiDE~Her~~~~-d~ll--~~l~~~~~~~~~~ki 199 (660)
.....+ .....+..+|+|+||+.+..... ......++++|||||||..+.+. ++.. ..+..+....++.++
T Consensus 86 ~~~~~~~~~~~~~l~~~~~~il~~tpe~l~~~~~~~~l~~~~l~~iViDEaH~i~~~g~~frp~y~~l~~l~~~~~~~~v 165 (591)
T TIGR01389 86 TLSAKEQQDIEKALVNGELKLLYVAPERLEQDYFLNMLQRIPIALVAVDEAHCVSQWGHDFRPEYQRLGSLAERFPQVPR 165 (591)
T ss_pred CCCHHHHHHHHHHHhCCCCCEEEEChhHhcChHHHHHHhcCCCCEEEEeCCcccccccCccHHHHHHHHHHHHhCCCCCE
Confidence 211110 01112267999999999865332 22235689999999999654322 3322 233344455566779
Q ss_pred EEeecccchHHH---HHHhhcCCCCCCCcccccCCCCCCeEEEECCccccceEEecCCCchhHHHHHHHHHHHHHhcCCC
Q 006122 200 IISSATIEAKSM---SAFFHARKGRRGLEGVELVPRLEPAILSVEGRGFNVQIHYVEEPVSDYVQAAVSTVLLIHDKEPP 276 (660)
Q Consensus 200 i~~SAT~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 276 (660)
+++|||.+.... ..+++... +..+ ..+... ..+.|......+.. ..+........+
T Consensus 166 i~lTAT~~~~~~~~i~~~l~~~~---------------~~~~-~~~~~r-~nl~~~v~~~~~~~----~~l~~~l~~~~~ 224 (591)
T TIGR01389 166 IALTATADAETRQDIRELLRLAD---------------ANEF-ITSFDR-PNLRFSVVKKNNKQ----KFLLDYLKKHRG 224 (591)
T ss_pred EEEEeCCCHHHHHHHHHHcCCCC---------------CCeE-ecCCCC-CCcEEEEEeCCCHH----HHHHHHHHhcCC
Confidence 999999965543 44443211 0011 111111 11222211111111 222233333346
Q ss_pred CcEEEEcCCHHHHHHHHHHHHHHhhhccCCCCCeEEEEccCCCCHHHHhhhcCCCCCCCcEEEEeCCCcccccCCCCeEE
Q 006122 277 GDILVFLTGQDDIDATIQLLTEEARTSKKNSSGLIILPLYSGLSRAEQEQVFSPTPRGKRKVVISTNIAETSLTLEGIVY 356 (660)
Q Consensus 277 ~~iLVF~~~~~~i~~l~~~L~~~~~~~~~~~~~~~v~~lh~~l~~~~r~~v~~~f~~g~~~vlvaT~i~e~Gidip~v~~ 356 (660)
++.||||+++++++.+++.|... ++.+.++||+|+.++|..+++.|.+|..+|||||+++++|||+|+|++
T Consensus 225 ~~~IIf~~sr~~~e~la~~L~~~---------g~~~~~~H~~l~~~~R~~i~~~F~~g~~~vlVaT~a~~~GID~p~v~~ 295 (591)
T TIGR01389 225 QSGIIYASSRKKVEELAERLESQ---------GISALAYHAGLSNKVRAENQEDFLYDDVKVMVATNAFGMGIDKPNVRF 295 (591)
T ss_pred CCEEEEECcHHHHHHHHHHHHhC---------CCCEEEEECCCCHHHHHHHHHHHHcCCCcEEEEechhhccCcCCCCCE
Confidence 78999999999999999999764 788999999999999999999999999999999999999999999999
Q ss_pred EEeCCCccceeecCCCCcccceeeecCHHhHHHhhcccCCC-CCcEEEEccChHHhh
Q 006122 357 VVDSGFSKQRFYNPISDIENLVVAPISKASARQRAGRAGRV-RPGKCYRLYTEEYFV 412 (660)
Q Consensus 357 VId~g~~k~~~~~~~~~~~~l~~~~~s~~~~~QR~GRaGR~-~~G~~~~l~~~~~~~ 412 (660)
||++++ |.|..+|.||+|||||. .+|.|+.+|+..+..
T Consensus 296 VI~~~~------------------p~s~~~y~Q~~GRaGR~G~~~~~il~~~~~d~~ 334 (591)
T TIGR01389 296 VIHYDM------------------PGNLESYYQEAGRAGRDGLPAEAILLYSPADIA 334 (591)
T ss_pred EEEcCC------------------CCCHHHHhhhhccccCCCCCceEEEecCHHHHH
Confidence 999887 88999999999999998 789999999987654
No 45
>PRK13767 ATP-dependent helicase; Provisional
Probab=100.00 E-value=2.4e-33 Score=324.75 Aligned_cols=339 Identities=21% Similarity=0.172 Sum_probs=219.7
Q ss_pred cchHhHHHHhcCCCcHHHHHHHHHHHhcCCEEEEEcCCCCcHH--HHHHHHHH--hcc----ccCCCeEEEEeCchHHHH
Q 006122 37 YGYASIEKQRQRLPVYKYRTAILYLVETHATTIIVGETGSGKT--TQIPQYLK--EAG----WADGGRVIACTQPRRLAV 108 (660)
Q Consensus 37 ~~~~~~~~~~~~lPi~~~~~~i~~~l~~~~~vii~apTGsGKT--~~ip~~l~--~~~----~~~~~~~i~v~p~r~la~ 108 (660)
+...+..+.+..- .++.|.+++..+.++++++++|||||||| +.+|.+-. ... ...+..+++++|+|+|+.
T Consensus 20 ~~v~~~~~~~~~~-~tpiQ~~Ai~~il~g~nvli~APTGSGKTlaa~Lpil~~l~~~~~~~~~~~~~~~LyIsPtraLa~ 98 (876)
T PRK13767 20 PYVREWFKEKFGT-FTPPQRYAIPLIHEGKNVLISSPTGSGKTLAAFLAIIDELFRLGREGELEDKVYCLYVSPLRALNN 98 (876)
T ss_pred HHHHHHHHHccCC-CCHHHHHHHHHHHcCCCEEEECCCCCcHHHHHHHHHHHHHHhhccccCCCCCeEEEEEcCHHHHHH
Confidence 4445555554333 55677777888899999999999999999 44554321 111 122346899999999998
Q ss_pred HHHHH------H---HHHHh-----CCeeeeEEeeeeecccc-CCCCCceEEEechHHHHHHHhcCC---CCCCCcEEEE
Q 006122 109 QAVAS------R---VAEEM-----GVKVGEEVGYTIRFEDF-TNKDLTAIKFLTDGVLLREMMDDP---LLTKYSVIMV 170 (660)
Q Consensus 109 ~~~~~------~---~~~~~-----~~~~~~~vg~~~~~~~~-~~~~~~~I~v~T~~~ll~~l~~~~---~l~~~~~iIi 170 (660)
+.... . ++... +..++..+|.....+.. .....++|+++||+.|...+.+.. .+.++++|||
T Consensus 99 di~~~L~~~l~~i~~~~~~~g~~~~~i~v~v~~Gdt~~~~r~~~l~~~p~IlVtTPE~L~~ll~~~~~~~~l~~l~~VVI 178 (876)
T PRK13767 99 DIHRNLEEPLTEIREIAKERGEELPEIRVAIRTGDTSSYEKQKMLKKPPHILITTPESLAILLNSPKFREKLRTVKWVIV 178 (876)
T ss_pred HHHHHHHHHHHHHHHHHHhcCCCcCCeeEEEEcCCCCHHHHHHHHhCCCCEEEecHHHHHHHhcChhHHHHHhcCCEEEE
Confidence 74432 1 12222 23344445532221111 111257999999999976664432 3789999999
Q ss_pred eCCCcCCc--ChhHHHHHHHHHHHhc-CCceEEEeeccc-chHHHHHHhhcCCCCCCCcccccCCCCCCeEEEEC-Cccc
Q 006122 171 DEAHERSI--STDILLGLLKKIQRCR-SDLRLIISSATI-EAKSMSAFFHARKGRRGLEGVELVPRLEPAILSVE-GRGF 245 (660)
Q Consensus 171 DE~Her~~--~~d~ll~~l~~~~~~~-~~~kii~~SAT~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~ 245 (660)
||+|+..- ....+...+.++.... ++.++|++|||+ +.+.+++|+........... ..++... .+.+
T Consensus 179 DE~H~l~~~~RG~~l~~~L~rL~~l~~~~~q~IglSATl~~~~~va~~L~~~~~~~~~r~--------~~iv~~~~~k~~ 250 (876)
T PRK13767 179 DEIHSLAENKRGVHLSLSLERLEELAGGEFVRIGLSATIEPLEEVAKFLVGYEDDGEPRD--------CEIVDARFVKPF 250 (876)
T ss_pred echhhhccCccHHHHHHHHHHHHHhcCCCCeEEEEecccCCHHHHHHHhcCccccCCCCc--------eEEEccCCCccc
Confidence 99995321 1223344455554443 678999999999 77889999875421000000 0011110 0111
Q ss_pred cceEEec-----CCCchhHHHHHHHHHHHHHhcCCCCcEEEEcCCHHHHHHHHHHHHHHhhhccCCCCCeEEEEccCCCC
Q 006122 246 NVQIHYV-----EEPVSDYVQAAVSTVLLIHDKEPPGDILVFLTGQDDIDATIQLLTEEARTSKKNSSGLIILPLYSGLS 320 (660)
Q Consensus 246 ~v~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~iLVF~~~~~~i~~l~~~L~~~~~~~~~~~~~~~v~~lh~~l~ 320 (660)
.+..... ..............+..+.. ..+++||||+|++.++.++..|.+..... ..+..+.+|||+|+
T Consensus 251 ~i~v~~p~~~l~~~~~~~~~~~l~~~L~~~i~--~~~~~LVF~nTr~~ae~la~~L~~~~~~~---~~~~~i~~hHg~ls 325 (876)
T PRK13767 251 DIKVISPVDDLIHTPAEEISEALYETLHELIK--EHRTTLIFTNTRSGAERVLYNLRKRFPEE---YDEDNIGAHHSSLS 325 (876)
T ss_pred eEEEeccCccccccccchhHHHHHHHHHHHHh--cCCCEEEEeCCHHHHHHHHHHHHHhchhh---ccccceeeeeCCCC
Confidence 1111110 01111112222333333332 35679999999999999999998754211 12467999999999
Q ss_pred HHHHhhhcCCCCCCCcEEEEeCCCcccccCCCCeEEEEeCCCccceeecCCCCcccceeeecCHHhHHHhhcccCCC---
Q 006122 321 RAEQEQVFSPTPRGKRKVVISTNIAETSLTLEGIVYVVDSGFSKQRFYNPISDIENLVVAPISKASARQRAGRAGRV--- 397 (660)
Q Consensus 321 ~~~r~~v~~~f~~g~~~vlvaT~i~e~Gidip~v~~VId~g~~k~~~~~~~~~~~~l~~~~~s~~~~~QR~GRaGR~--- 397 (660)
+++|..+++.|++|.++|||||+++++|||+|++++||++|. |.|.++|+||+|||||.
T Consensus 326 ~~~R~~ve~~fk~G~i~vLVaTs~Le~GIDip~Vd~VI~~~~------------------P~sv~~ylQRiGRaGR~~g~ 387 (876)
T PRK13767 326 REVRLEVEEKLKRGELKVVVSSTSLELGIDIGYIDLVVLLGS------------------PKSVSRLLQRIGRAGHRLGE 387 (876)
T ss_pred HHHHHHHHHHHHcCCCeEEEECChHHhcCCCCCCcEEEEeCC------------------CCCHHHHHHhcccCCCCCCC
Confidence 999999999999999999999999999999999999999776 88999999999999986
Q ss_pred -CCcEEEEccC
Q 006122 398 -RPGKCYRLYT 407 (660)
Q Consensus 398 -~~G~~~~l~~ 407 (660)
..|.++.+-.
T Consensus 388 ~~~g~ii~~~~ 398 (876)
T PRK13767 388 VSKGRIIVVDR 398 (876)
T ss_pred CCcEEEEEcCc
Confidence 3467776543
No 46
>KOG0340 consensus ATP-dependent RNA helicase [RNA processing and modification]
Probab=100.00 E-value=4.2e-34 Score=277.74 Aligned_cols=344 Identities=18% Similarity=0.205 Sum_probs=245.0
Q ss_pred ccCCCCCCCccchHhHHHHhcCCCcHHHHHHHHHHHhcCCEEEEEcCCCCcHHH--HHHHHHHhccccCCCeEEEEeCch
Q 006122 27 SSLSSASSIGYGYASIEKQRQRLPVYKYRTAILYLVETHATTIIVGETGSGKTT--QIPQYLKEAGWADGGRVIACTQPR 104 (660)
Q Consensus 27 ~~~~~~~~~~~~~~~~~~~~~~lPi~~~~~~i~~~l~~~~~vii~apTGsGKT~--~ip~~l~~~~~~~~~~~i~v~p~r 104 (660)
.+|+.++++++....+....-.-|...++. .+.+|..|+++|-+|.||||||+ .+|.+-.-..-..+.-.++++|+|
T Consensus 7 ~~F~~LGl~~Wlve~l~~l~i~~pTpiQ~~-cIpkILeGrdcig~AkTGsGKT~AFaLPil~rLsedP~giFalvlTPTr 85 (442)
T KOG0340|consen 7 KPFSILGLSPWLVEQLKALGIKKPTPIQQA-CIPKILEGRDCIGCAKTGSGKTAAFALPILNRLSEDPYGIFALVLTPTR 85 (442)
T ss_pred CchhhcCccHHHHHHHHHhcCCCCCchHhh-hhHHHhcccccccccccCCCcchhhhHHHHHhhccCCCcceEEEecchH
Confidence 359999999998877776665556655554 55566678889999999999994 455443222212234469999999
Q ss_pred HHHHHHHHHH--HHHHhCCeeeeEEeeeeec-cccCCCCCceEEEechHHHHHHHhcCC-----CCCCCcEEEEeCCCcC
Q 006122 105 RLAVQAVASR--VAEEMGVKVGEEVGYTIRF-EDFTNKDLTAIKFLTDGVLLREMMDDP-----LLTKYSVIMVDEAHER 176 (660)
Q Consensus 105 ~la~~~~~~~--~~~~~~~~~~~~vg~~~~~-~~~~~~~~~~I~v~T~~~ll~~l~~~~-----~l~~~~~iIiDE~Her 176 (660)
+++.|...+. +.+.++.++...+|+.... ......++++++++|||++-.++.+++ .+.++.++|+|||+ |
T Consensus 86 ELA~QiaEQF~alGk~l~lK~~vivGG~d~i~qa~~L~~rPHvVvatPGRlad~l~sn~~~~~~~~~rlkflVlDEAD-r 164 (442)
T KOG0340|consen 86 ELALQIAEQFIALGKLLNLKVSVIVGGTDMIMQAAILSDRPHVVVATPGRLADHLSSNLGVCSWIFQRLKFLVLDEAD-R 164 (442)
T ss_pred HHHHHHHHHHHHhcccccceEEEEEccHHHhhhhhhcccCCCeEecCccccccccccCCccchhhhhceeeEEecchh-h
Confidence 9999855444 3356677888888854221 222223489999999999999987762 28899999999999 8
Q ss_pred CcChhHHHHHHHHHHHhcCCceEEEeecccchHHHHHHhhcCCCCCCCcccccCCCCCCeEEEE-CCcc--ccceEEecC
Q 006122 177 SISTDILLGLLKKIQRCRSDLRLIISSATIEAKSMSAFFHARKGRRGLEGVELVPRLEPAILSV-EGRG--FNVQIHYVE 253 (660)
Q Consensus 177 ~~~~d~ll~~l~~~~~~~~~~kii~~SAT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~--~~v~~~~~~ 253 (660)
.++.+|-..+--......+..+.+++|||++- .+.+.++. +.+.++ +...+. ++.. ......|..
T Consensus 165 vL~~~f~d~L~~i~e~lP~~RQtLlfSATitd-~i~ql~~~-~i~k~~----------a~~~e~~~~vstvetL~q~yI~ 232 (442)
T KOG0340|consen 165 VLAGCFPDILEGIEECLPKPRQTLLFSATITD-TIKQLFGC-PITKSI----------AFELEVIDGVSTVETLYQGYIL 232 (442)
T ss_pred hhccchhhHHhhhhccCCCccceEEEEeehhh-HHHHhhcC-Cccccc----------ceEEeccCCCCchhhhhhheee
Confidence 87776665554444455666799999999932 23344432 211110 001111 1111 111222322
Q ss_pred CCchhHHHHHHHHHHHHHhcCCCCcEEEEcCCHHHHHHHHHHHHHHhhhccCCCCCeEEEEccCCCCHHHHhhhcCCCCC
Q 006122 254 EPVSDYVQAAVSTVLLIHDKEPPGDILVFLTGQDDIDATIQLLTEEARTSKKNSSGLIILPLYSGLSRAEQEQVFSPTPR 333 (660)
Q Consensus 254 ~~~~~~~~~~~~~~~~~~~~~~~~~iLVF~~~~~~i~~l~~~L~~~~~~~~~~~~~~~v~~lh~~l~~~~r~~v~~~f~~ 333 (660)
.+... .+.-+--++.....++.+.++||+++..+++.++..|... ++.+..+||.|++.+|...+..|+.
T Consensus 233 ~~~~v-kdaYLv~~Lr~~~~~~~~simIFvnttr~cQ~l~~~l~~l---------e~r~~~lHs~m~Q~eR~~aLsrFrs 302 (442)
T KOG0340|consen 233 VSIDV-KDAYLVHLLRDFENKENGSIMIFVNTTRECQLLSMTLKNL---------EVRVVSLHSQMPQKERLAALSRFRS 302 (442)
T ss_pred cchhh-hHHHHHHHHhhhhhccCceEEEEeehhHHHHHHHHHHhhh---------ceeeeehhhcchHHHHHHHHHHHhh
Confidence 22111 1111122223333447889999999999999999999876 8999999999999999999999999
Q ss_pred CCcEEEEeCCCcccccCCCCeEEEEeCCCccceeecCCCCcccceeeecCHHhHHHhhcccCCC-CCcEEEEccChHHhh
Q 006122 334 GKRKVVISTNIAETSLTLEGIVYVVDSGFSKQRFYNPISDIENLVVAPISKASARQRAGRAGRV-RPGKCYRLYTEEYFV 412 (660)
Q Consensus 334 g~~~vlvaT~i~e~Gidip~v~~VId~g~~k~~~~~~~~~~~~l~~~~~s~~~~~QR~GRaGR~-~~G~~~~l~~~~~~~ 412 (660)
+..+||+||++|++|+|||.|..|||+++ |-++.+|+||.||+.|. +.|..+.++++.+.+
T Consensus 303 ~~~~iliaTDVAsRGLDIP~V~LVvN~di------------------Pr~P~~yiHRvGRtARAGR~G~aiSivt~rDv~ 364 (442)
T KOG0340|consen 303 NAARILIATDVASRGLDIPTVELVVNHDI------------------PRDPKDYIHRVGRTARAGRKGMAISIVTQRDVE 364 (442)
T ss_pred cCccEEEEechhhcCCCCCceeEEEecCC------------------CCCHHHHHHhhcchhcccCCcceEEEechhhHH
Confidence 99999999999999999999999999887 88899999999999999 889999999976654
No 47
>COG1201 Lhr Lhr-like helicases [General function prediction only]
Probab=100.00 E-value=6.3e-33 Score=306.88 Aligned_cols=387 Identities=19% Similarity=0.183 Sum_probs=264.1
Q ss_pred CCccchHhHHHHhcCCCcHHHHHHHHHHHhcCCEEEEEcCCCCcHH--HHHHHHHHhccc-----cCCCeEEEEeCchHH
Q 006122 34 SIGYGYASIEKQRQRLPVYKYRTAILYLVETHATTIIVGETGSGKT--TQIPQYLKEAGW-----ADGGRVIACTQPRRL 106 (660)
Q Consensus 34 ~~~~~~~~~~~~~~~lPi~~~~~~i~~~l~~~~~vii~apTGsGKT--~~ip~~l~~~~~-----~~~~~~i~v~p~r~l 106 (660)
.-.+..++.+..+..-|.. .|.+++..+.+|++++|.|||||||| ..+|.+-.-... ..+-.++|++|.|+|
T Consensus 7 ~l~~~v~~~~~~~~~~~t~-~Q~~a~~~i~~G~nvLiiAPTGsGKTeAAfLpil~~l~~~~~~~~~~~i~~lYIsPLkAL 85 (814)
T COG1201 7 ILDPRVREWFKRKFTSLTP-PQRYAIPEIHSGENVLIIAPTGSGKTEAAFLPVINELLSLGKGKLEDGIYALYISPLKAL 85 (814)
T ss_pred hcCHHHHHHHHHhcCCCCH-HHHHHHHHHhCCCceEEEcCCCCChHHHHHHHHHHHHHhccCCCCCCceEEEEeCcHHHH
Confidence 3445566677777555554 55666667779999999999999999 445544322211 123457999999999
Q ss_pred HHHHH--HHHHHHHhCCeeeeEEeeeeeccccCC-CCCceEEEechHHHHHHHhcCC---CCCCCcEEEEeCCC-----c
Q 006122 107 AVQAV--ASRVAEEMGVKVGEEVGYTIRFEDFTN-KDLTAIKFLTDGVLLREMMDDP---LLTKYSVIMVDEAH-----E 175 (660)
Q Consensus 107 a~~~~--~~~~~~~~~~~~~~~vg~~~~~~~~~~-~~~~~I~v~T~~~ll~~l~~~~---~l~~~~~iIiDE~H-----e 175 (660)
..+.. .+...+++|..+....|...+.+.... ...++|+++||+.|.-.+.... .+.++.+|||||+| +
T Consensus 86 n~Di~~rL~~~~~~~G~~v~vRhGDT~~~er~r~~~~PPdILiTTPEsL~lll~~~~~r~~l~~vr~VIVDEiHel~~sK 165 (814)
T COG1201 86 NNDIRRRLEEPLRELGIEVAVRHGDTPQSEKQKMLKNPPHILITTPESLAILLNSPKFRELLRDVRYVIVDEIHALAESK 165 (814)
T ss_pred HHHHHHHHHHHHHHcCCccceecCCCChHHhhhccCCCCcEEEeChhHHHHHhcCHHHHHHhcCCcEEEeehhhhhhccc
Confidence 98733 344667889988777786655444322 2368999999999987776543 39999999999999 4
Q ss_pred CCcChhHHHHHHHHHHHhcCCceEEEeeccc-chHHHHHHhhcCCCCCCCcccccCCCCCCeEEEECCc-cccceEEecC
Q 006122 176 RSISTDILLGLLKKIQRCRSDLRLIISSATI-EAKSMSAFFHARKGRRGLEGVELVPRLEPAILSVEGR-GFNVQIHYVE 253 (660)
Q Consensus 176 r~~~~d~ll~~l~~~~~~~~~~kii~~SAT~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~v~~~~~~ 253 (660)
|+....+.+ .++...-++++.|++|||+ +++.+++|+..... ...++.+.+. ...+++....
T Consensus 166 RG~~Lsl~L---eRL~~l~~~~qRIGLSATV~~~~~varfL~g~~~-------------~~~Iv~~~~~k~~~i~v~~p~ 229 (814)
T COG1201 166 RGVQLALSL---ERLRELAGDFQRIGLSATVGPPEEVAKFLVGFGD-------------PCEIVDVSAAKKLEIKVISPV 229 (814)
T ss_pred cchhhhhhH---HHHHhhCcccEEEeehhccCCHHHHHHHhcCCCC-------------ceEEEEcccCCcceEEEEecC
Confidence 555444444 4444444489999999999 99999999987531 1114443332 2333333332
Q ss_pred CCc---hhHHHHHHHHHHHHHhcCCCCcEEEEcCCHHHHHHHHHHHHHHhhhccCCCCCeEEEEccCCCCHHHHhhhcCC
Q 006122 254 EPV---SDYVQAAVSTVLLIHDKEPPGDILVFLTGQDDIDATIQLLTEEARTSKKNSSGLIILPLYSGLSRAEQEQVFSP 330 (660)
Q Consensus 254 ~~~---~~~~~~~~~~~~~~~~~~~~~~iLVF~~~~~~i~~l~~~L~~~~~~~~~~~~~~~v~~lh~~l~~~~r~~v~~~ 330 (660)
... ..........+..+.+.. ..+|||+||+..+|.++..|.+.. ...+..|||+++.+.|..+++.
T Consensus 230 ~~~~~~~~~~~~~~~~i~~~v~~~--~ttLIF~NTR~~aE~l~~~L~~~~--------~~~i~~HHgSlSre~R~~vE~~ 299 (814)
T COG1201 230 EDLIYDEELWAALYERIAELVKKH--RTTLIFTNTRSGAERLAFRLKKLG--------PDIIEVHHGSLSRELRLEVEER 299 (814)
T ss_pred CccccccchhHHHHHHHHHHHhhc--CcEEEEEeChHHHHHHHHHHHHhc--------CCceeeecccccHHHHHHHHHH
Confidence 221 112233445555555443 369999999999999999998873 3789999999999999999999
Q ss_pred CCCCCcEEEEeCCCcccccCCCCeEEEEeCCCccceeecCCCCcccceeeecCHHhHHHhhcccCCC----CCcEEEEcc
Q 006122 331 TPRGKRKVVISTNIAETSLTLEGIVYVVDSGFSKQRFYNPISDIENLVVAPISKASARQRAGRAGRV----RPGKCYRLY 406 (660)
Q Consensus 331 f~~g~~~vlvaT~i~e~Gidip~v~~VId~g~~k~~~~~~~~~~~~l~~~~~s~~~~~QR~GRaGR~----~~G~~~~l~ 406 (660)
|++|+.+++|||+.+|.|||+.+|+.||+.+- |.|.+.+.||+||+|+. ..|..|..-
T Consensus 300 lk~G~lravV~TSSLELGIDiG~vdlVIq~~S------------------P~sV~r~lQRiGRsgHr~~~~Skg~ii~~~ 361 (814)
T COG1201 300 LKEGELKAVVATSSLELGIDIGDIDLVIQLGS------------------PKSVNRFLQRIGRAGHRLGEVSKGIIIAED 361 (814)
T ss_pred HhcCCceEEEEccchhhccccCCceEEEEeCC------------------cHHHHHHhHhccccccccCCcccEEEEecC
Confidence 99999999999999999999999999999655 88888899999999987 345444443
Q ss_pred ChHHhhh-------hCCCCCCCccccccchhHHHHHHHcCCCCcc-----------CCCCCCCCCHHHHHHHHHHHHH
Q 006122 407 TEEYFVK-------EIPAEGIPEMQRSNLVSCVIQLKALGIDNIL-----------GFDWPASPPPEAMIRALEVLYS 466 (660)
Q Consensus 407 ~~~~~~~-------~~~~~~~pei~~~~l~~~~l~l~~~~~~~~~-----------~~~~~~~p~~~~~~~al~~L~~ 466 (660)
..+..+. .-.....+++...+|+-+.-++.++-+.... .++|- .-+.+.....++.|..
T Consensus 362 r~dllE~~vi~~~a~~g~le~~~i~~~~LDVLaq~ivg~~~~~~~~~~~~y~~vrraypy~-~L~~e~f~~v~~~l~~ 438 (814)
T COG1201 362 RDDLLECLVLADLALEGKLERIKIPKNPLDVLAQQIVGMALEKVWEVEEAYRVVRRAYPYA-DLSREDFRLVLRYLAG 438 (814)
T ss_pred HHHHHHHHHHHHHHHhCCcccCCCCCcchhHHHHHHHHHHhhCcCCHHHHHHHHHhccccc-cCCHHHHHHHHHHHhh
Confidence 2222221 0122334666666766665555554322211 11221 1245667777777777
No 48
>KOG0335 consensus ATP-dependent RNA helicase [RNA processing and modification]
Probab=100.00 E-value=3.2e-34 Score=295.43 Aligned_cols=339 Identities=19% Similarity=0.189 Sum_probs=238.9
Q ss_pred cCCCCCCCccchHhHHHHhcCCCcHHHHHHHHHHHhcCCEEEEEcCCCCcHH--HHHHHHHHhcccc----------CCC
Q 006122 28 SLSSASSIGYGYASIEKQRQRLPVYKYRTAILYLVETHATTIIVGETGSGKT--TQIPQYLKEAGWA----------DGG 95 (660)
Q Consensus 28 ~~~~~~~~~~~~~~~~~~~~~lPi~~~~~~i~~~l~~~~~vii~apTGsGKT--~~ip~~l~~~~~~----------~~~ 95 (660)
+|....+-.....++......-|... |+..+..+.+++.++++|+|||||| +++|.+-+..... ..+
T Consensus 75 ~f~~~~l~~~l~~ni~~~~~~~ptpv-Qk~sip~i~~Grdl~acAqTGsGKT~aFLiPii~~~~~~~~~~~~~~~~~~~P 153 (482)
T KOG0335|consen 75 TFDEAILGEALAGNIKRSGYTKPTPV-QKYSIPIISGGRDLMACAQTGSGKTAAFLIPIISYLLDEGPEDRGESGGGVYP 153 (482)
T ss_pred cccccchhHHHhhccccccccCCCcc-eeeccceeecCCceEEEccCCCcchHHHHHHHHHHHHhcCcccCcccCCCCCC
Confidence 56655555555555555555555544 4455666788888999999999999 8889765432111 125
Q ss_pred eEEEEeCchHHHHHHH--HHHHHHHhCCeeeeEEee-eeeccccCCCCCceEEEechHHHHHHHhcCCC-CCCCcEEEEe
Q 006122 96 RVIACTQPRRLAVQAV--ASRVAEEMGVKVGEEVGY-TIRFEDFTNKDLTAIKFLTDGVLLREMMDDPL-LTKYSVIMVD 171 (660)
Q Consensus 96 ~~i~v~p~r~la~~~~--~~~~~~~~~~~~~~~vg~-~~~~~~~~~~~~~~I~v~T~~~ll~~l~~~~~-l~~~~~iIiD 171 (660)
.+++++|+|+|+.|-. ++++.-..+.......|. ..+.+.......++|+++|||+|.+.+..... |.+..++|+|
T Consensus 154 ~~lIlapTReL~~Qi~nea~k~~~~s~~~~~~~ygg~~~~~q~~~~~~gcdIlvaTpGrL~d~~e~g~i~l~~~k~~vLD 233 (482)
T KOG0335|consen 154 RALILAPTRELVDQIYNEARKFSYLSGMKSVVVYGGTDLGAQLRFIKRGCDILVATPGRLKDLIERGKISLDNCKFLVLD 233 (482)
T ss_pred ceEEEeCcHHHhhHHHHHHHhhcccccceeeeeeCCcchhhhhhhhccCccEEEecCchhhhhhhcceeehhhCcEEEec
Confidence 6899999999999833 444444444444444442 12222223334799999999999999877665 9999999999
Q ss_pred CCCcCCcC-hhHHHHHHHHHHHhc----CCceEEEeeccc--chHHHHHHhhcCCCCCCCcccccCCCCCCeEEEECCcc
Q 006122 172 EAHERSIS-TDILLGLLKKIQRCR----SDLRLIISSATI--EAKSMSAFFHARKGRRGLEGVELVPRLEPAILSVEGRG 244 (660)
Q Consensus 172 E~Her~~~-~d~ll~~l~~~~~~~----~~~kii~~SAT~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 244 (660)
||+ |+++ +.|...+-+.+.... ...+.+++|||. +...++.+|-... .....+..+.+..
T Consensus 234 EAD-rMlD~mgF~p~Ir~iv~~~~~~~~~~~qt~mFSAtfp~~iq~l~~~fl~~~------------yi~laV~rvg~~~ 300 (482)
T KOG0335|consen 234 EAD-RMLDEMGFEPQIRKIVEQLGMPPKNNRQTLLFSATFPKEIQRLAADFLKDN------------YIFLAVGRVGSTS 300 (482)
T ss_pred chH-HhhhhccccccHHHHhcccCCCCccceeEEEEeccCChhhhhhHHHHhhcc------------ceEEEEeeecccc
Confidence 999 7887 777777666665432 368899999999 4444554443321 0011122333333
Q ss_pred ccceEEecCCCchhHHHHHHHHHHHHHhcCCCC-----cEEEEcCCHHHHHHHHHHHHHHhhhccCCCCCeEEEEccCCC
Q 006122 245 FNVQIHYVEEPVSDYVQAAVSTVLLIHDKEPPG-----DILVFLTGQDDIDATIQLLTEEARTSKKNSSGLIILPLYSGL 319 (660)
Q Consensus 245 ~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~iLVF~~~~~~i~~l~~~L~~~~~~~~~~~~~~~v~~lh~~l 319 (660)
..+..........+.....+..+.........+ .++|||.+++.+..++..|... ++....+||..
T Consensus 301 ~ni~q~i~~V~~~~kr~~Lldll~~~~~~~~~~~~~~e~tlvFvEt~~~~d~l~~~l~~~---------~~~~~sIhg~~ 371 (482)
T KOG0335|consen 301 ENITQKILFVNEMEKRSKLLDLLNKDDGPPSDGEPKWEKTLVFVETKRGADELAAFLSSN---------GYPAKSIHGDR 371 (482)
T ss_pred ccceeEeeeecchhhHHHHHHHhhcccCCcccCCcccceEEEEeeccchhhHHHHHHhcC---------CCCceeecchh
Confidence 344443333333333333333332222111233 7999999999999999999776 88999999999
Q ss_pred CHHHHhhhcCCCCCCCcEEEEeCCCcccccCCCCeEEEEeCCCccceeecCCCCcccceeeecCHHhHHHhhcccCCC-C
Q 006122 320 SRAEQEQVFSPTPRGKRKVVISTNIAETSLTLEGIVYVVDSGFSKQRFYNPISDIENLVVAPISKASARQRAGRAGRV-R 398 (660)
Q Consensus 320 ~~~~r~~v~~~f~~g~~~vlvaT~i~e~Gidip~v~~VId~g~~k~~~~~~~~~~~~l~~~~~s~~~~~QR~GRaGR~-~ 398 (660)
++.+|.+.++.|++|...|+|||+++++|+|||+|++||++++ |....+|+||+||+||. .
T Consensus 372 tq~er~~al~~Fr~g~~pvlVaT~VaaRGlDi~~V~hVInyDm------------------P~d~d~YvHRIGRTGR~Gn 433 (482)
T KOG0335|consen 372 TQIEREQALNDFRNGKAPVLVATNVAARGLDIPNVKHVINYDM------------------PADIDDYVHRIGRTGRVGN 433 (482)
T ss_pred hhhHHHHHHHHhhcCCcceEEEehhhhcCCCCCCCceeEEeec------------------CcchhhHHHhccccccCCC
Confidence 9999999999999999999999999999999999999999877 77788999999999999 7
Q ss_pred CcEEEEccC
Q 006122 399 PGKCYRLYT 407 (660)
Q Consensus 399 ~G~~~~l~~ 407 (660)
.|....|+.
T Consensus 434 ~G~atsf~n 442 (482)
T KOG0335|consen 434 GGRATSFFN 442 (482)
T ss_pred CceeEEEec
Confidence 899999998
No 49
>KOG0336 consensus ATP-dependent RNA helicase [RNA processing and modification]
Probab=100.00 E-value=9.1e-34 Score=279.28 Aligned_cols=311 Identities=20% Similarity=0.268 Sum_probs=235.9
Q ss_pred HHHHHHHHhcCCEEEEEcCCCCcHH--HHHHHHHHhccc------cCCCeEEEEeCchHHHHHHHHHH-HHHHhCCeeee
Q 006122 55 RTAILYLVETHATTIIVGETGSGKT--TQIPQYLKEAGW------ADGGRVIACTQPRRLAVQAVASR-VAEEMGVKVGE 125 (660)
Q Consensus 55 ~~~i~~~l~~~~~vii~apTGsGKT--~~ip~~l~~~~~------~~~~~~i~v~p~r~la~~~~~~~-~~~~~~~~~~~ 125 (660)
|.+....+.++.+++.+|.||+||| +++|.++..... ..+..+++++|+|+|+.+.-..- .-...|....+
T Consensus 247 qSQaWPI~LQG~DliGVAQTgtgKtL~~L~pg~ihi~aqp~~~~qr~~p~~lvl~ptreLalqie~e~~kysyng~ksvc 326 (629)
T KOG0336|consen 247 QSQAWPILLQGIDLIGVAQTGTGKTLAFLLPGFIHIDAQPKRREQRNGPGVLVLTPTRELALQIEGEVKKYSYNGLKSVC 326 (629)
T ss_pred hhcccceeecCcceEEEEecCCCcCHHHhccceeeeeccchhhhccCCCceEEEeccHHHHHHHHhHHhHhhhcCcceEE
Confidence 3445666778899999999999999 788876654322 23456799999999988733222 22334555566
Q ss_pred EEeeeeeccccCC-CCCceEEEechHHHHHHHhcCCC-CCCCcEEEEeCCCcCCcChhHHHHHHHHHHHhcCCceEEEee
Q 006122 126 EVGYTIRFEDFTN-KDLTAIKFLTDGVLLREMMDDPL-LTKYSVIMVDEAHERSISTDILLGLLKKIQRCRSDLRLIISS 203 (660)
Q Consensus 126 ~vg~~~~~~~~~~-~~~~~I~v~T~~~ll~~l~~~~~-l~~~~~iIiDE~Her~~~~d~ll~~l~~~~~~~~~~kii~~S 203 (660)
..|...|.+.... .....|+++||++|.++...+.. |..+.++|+|||+ |++++.|-..+.+.++..+|+.++++.|
T Consensus 327 ~ygggnR~eqie~lkrgveiiiatPgrlndL~~~n~i~l~siTYlVlDEAD-rMLDMgFEpqIrkilldiRPDRqtvmTS 405 (629)
T KOG0336|consen 327 VYGGGNRNEQIEDLKRGVEIIIATPGRLNDLQMDNVINLASITYLVLDEAD-RMLDMGFEPQIRKILLDIRPDRQTVMTS 405 (629)
T ss_pred EecCCCchhHHHHHhcCceEEeeCCchHhhhhhcCeeeeeeeEEEEecchh-hhhcccccHHHHHHhhhcCCcceeeeec
Confidence 6676555444322 22689999999999999887766 9999999999999 9999999999999999999999999999
Q ss_pred cccc--hHHHHHHhhcCCCCCCCcccccCCCCCCeEEEECCcc-----ccceEEecCCCchhHHHHHHHHHHHHHhcCCC
Q 006122 204 ATIE--AKSMSAFFHARKGRRGLEGVELVPRLEPAILSVEGRG-----FNVQIHYVEEPVSDYVQAAVSTVLLIHDKEPP 276 (660)
Q Consensus 204 AT~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 276 (660)
||.+ +..+++-+...+ ++...|.. ..|+..+.-....+... .+..... .....
T Consensus 406 ATWP~~VrrLa~sY~Kep-----------------~~v~vGsLdL~a~~sVkQ~i~v~~d~~k~~-~~~~f~~--~ms~n 465 (629)
T KOG0336|consen 406 ATWPEGVRRLAQSYLKEP-----------------MIVYVGSLDLVAVKSVKQNIIVTTDSEKLE-IVQFFVA--NMSSN 465 (629)
T ss_pred ccCchHHHHHHHHhhhCc-----------------eEEEecccceeeeeeeeeeEEecccHHHHH-HHHHHHH--hcCCC
Confidence 9993 455654443333 34333432 34444443333333332 2222221 22456
Q ss_pred CcEEEEcCCHHHHHHHHHHHHHHhhhccCCCCCeEEEEccCCCCHHHHhhhcCCCCCCCcEEEEeCCCcccccCCCCeEE
Q 006122 277 GDILVFLTGQDDIDATIQLLTEEARTSKKNSSGLIILPLYSGLSRAEQEQVFSPTPRGKRKVVISTNIAETSLTLEGIVY 356 (660)
Q Consensus 277 ~~iLVF~~~~~~i~~l~~~L~~~~~~~~~~~~~~~v~~lh~~l~~~~r~~v~~~f~~g~~~vlvaT~i~e~Gidip~v~~ 356 (660)
.++||||..+-.+..+...+.-. ++....+||+-.+.+|+..++.|+.|+.+|||||+++++|+|+|+|++
T Consensus 466 dKvIiFv~~K~~AD~LSSd~~l~---------gi~~q~lHG~r~Q~DrE~al~~~ksG~vrILvaTDlaSRGlDv~DiTH 536 (629)
T KOG0336|consen 466 DKVIIFVSRKVMADHLSSDFCLK---------GISSQSLHGNREQSDREMALEDFKSGEVRILVATDLASRGLDVPDITH 536 (629)
T ss_pred ceEEEEEechhhhhhccchhhhc---------ccchhhccCChhhhhHHHHHHhhhcCceEEEEEechhhcCCCchhcce
Confidence 67999999988777776665433 888999999999999999999999999999999999999999999999
Q ss_pred EEeCCCccceeecCCCCcccceeeecCHHhHHHhhcccCCC-CCcEEEEccChHHhhh
Q 006122 357 VVDSGFSKQRFYNPISDIENLVVAPISKASARQRAGRAGRV-RPGKCYRLYTEEYFVK 413 (660)
Q Consensus 357 VId~g~~k~~~~~~~~~~~~l~~~~~s~~~~~QR~GRaGR~-~~G~~~~l~~~~~~~~ 413 (660)
|+++++ |....+|.||+||+||. +.|..+.+++..++..
T Consensus 537 V~NyDF------------------P~nIeeYVHRvGrtGRaGr~G~sis~lt~~D~~~ 576 (629)
T KOG0336|consen 537 VYNYDF------------------PRNIEEYVHRVGRTGRAGRTGTSISFLTRNDWSM 576 (629)
T ss_pred eeccCC------------------CccHHHHHHHhcccccCCCCcceEEEEehhhHHH
Confidence 999888 88899999999999999 8899999999877653
No 50
>KOG0348 consensus ATP-dependent RNA helicase [RNA processing and modification]
Probab=100.00 E-value=3.6e-33 Score=283.92 Aligned_cols=369 Identities=20% Similarity=0.246 Sum_probs=245.3
Q ss_pred ccccCCCCCCCccchHhHHHHh-cCCCcHHHHHHHHHHHhcCCEEEEEcCCCCcHH--HHHHHHHHhccc------cCCC
Q 006122 25 LSSSLSSASSIGYGYASIEKQR-QRLPVYKYRTAILYLVETHATTIIVGETGSGKT--TQIPQYLKEAGW------ADGG 95 (660)
Q Consensus 25 ~~~~~~~~~~~~~~~~~~~~~~-~~lPi~~~~~~i~~~l~~~~~vii~apTGsGKT--~~ip~~l~~~~~------~~~~ 95 (660)
.++.|..+.++......+...- -.-|...+++.|...+ ++++++|.++|||||| |++|..-.-... ..+.
T Consensus 134 ts~~f~~LGL~~~lv~~L~~~m~i~~pTsVQkq~IP~lL-~grD~lV~aQTGSGKTLAYllPiVq~Lq~m~~ki~Rs~G~ 212 (708)
T KOG0348|consen 134 TSAAFASLGLHPHLVSHLNTKMKISAPTSVQKQAIPVLL-EGRDALVRAQTGSGKTLAYLLPIVQSLQAMEPKIQRSDGP 212 (708)
T ss_pred ccccchhcCCCHHHHHHHHHHhccCccchHhhcchhhhh-cCcceEEEcCCCCcccHHHHHHHHHHHHhcCccccccCCc
Confidence 4667888888887766554433 3346665655555544 5788999999999999 888865443222 2345
Q ss_pred eEEEEeCchHHHHH--HHHHHHHHHhCC-eeeeEEeeeeecccc-CCCCCceEEEechHHHHHHHhcCCC--CCCCcEEE
Q 006122 96 RVIACTQPRRLAVQ--AVASRVAEEMGV-KVGEEVGYTIRFEDF-TNKDLTAIKFLTDGVLLREMMDDPL--LTKYSVIM 169 (660)
Q Consensus 96 ~~i~v~p~r~la~~--~~~~~~~~~~~~-~~~~~vg~~~~~~~~-~~~~~~~I~v~T~~~ll~~l~~~~~--l~~~~~iI 169 (660)
-+++++|+|+|+.| .+++.+.+.+.. -.|...|...+-..+ ......+|+|+|||+|++++.+-.. +.++.+||
T Consensus 213 ~ALVivPTREL~~Q~y~~~qKLl~~~hWIVPg~lmGGEkkKSEKARLRKGiNILIgTPGRLvDHLknT~~i~~s~LRwlV 292 (708)
T KOG0348|consen 213 YALVIVPTRELALQIYETVQKLLKPFHWIVPGVLMGGEKKKSEKARLRKGINILIGTPGRLVDHLKNTKSIKFSRLRWLV 292 (708)
T ss_pred eEEEEechHHHHHHHHHHHHHHhcCceEEeeceeecccccccHHHHHhcCceEEEcCchHHHHHHhccchheeeeeeEEE
Confidence 67999999999998 444544443332 234444433222211 1123689999999999999987543 88899999
Q ss_pred EeCCCcCCcChhHHHH---HHHHHHH----hc------CCceEEEeeccc--chHHHHHHhhcCCCCCCCcccc--cCCC
Q 006122 170 VDEAHERSISTDILLG---LLKKIQR----CR------SDLRLIISSATI--EAKSMSAFFHARKGRRGLEGVE--LVPR 232 (660)
Q Consensus 170 iDE~Her~~~~d~ll~---~l~~~~~----~~------~~~kii~~SAT~--~~~~~~~~~~~~~~~~~~~~~~--~~~~ 232 (660)
+||++ |.++..|-.. +++.+.. .+ +..+-+++|||+ .+..+++.--..++..+....- ..+.
T Consensus 293 lDEaD-rlleLGfekdit~Il~~v~~~~~~e~~~~~lp~q~q~mLlSATLtd~V~rLa~~sLkDpv~I~ld~s~~~~~p~ 371 (708)
T KOG0348|consen 293 LDEAD-RLLELGFEKDITQILKAVHSIQNAECKDPKLPHQLQNMLLSATLTDGVNRLADLSLKDPVYISLDKSHSQLNPK 371 (708)
T ss_pred ecchh-HHHhccchhhHHHHHHHHhhccchhcccccccHHHHhHhhhhhhHHHHHHHhhccccCceeeeccchhhhcCcc
Confidence 99999 5555544322 2333311 12 236788999999 4566665533333322211000 0000
Q ss_pred --------CCCe--EEEECCccccceEEecCCCchhHHHHHHHHHHHHHhcCCCCcEEEEcCCHHHHHHHHHHHHHHhhh
Q 006122 233 --------LEPA--ILSVEGRGFNVQIHYVEEPVSDYVQAAVSTVLLIHDKEPPGDILVFLTGQDDIDATIQLLTEEART 302 (660)
Q Consensus 233 --------~~~~--~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iLVF~~~~~~i~~l~~~L~~~~~~ 302 (660)
..+. .+..-.-+.....+|...|..-.+-.....+....+.....+++||+.+.+.++.-++.+...+..
T Consensus 372 ~~a~~ev~~~~~~~~l~~~~iPeqL~qry~vVPpKLRLV~Laa~L~~~~k~~~~qk~iVF~S~~d~VeFHy~lf~~~l~~ 451 (708)
T KOG0348|consen 372 DKAVQEVDDGPAGDKLDSFAIPEQLLQRYTVVPPKLRLVALAALLLNKVKFEEKQKMIVFFSCSDSVEFHYSLFSEALLS 451 (708)
T ss_pred hhhhhhcCCcccccccccccCcHHhhhceEecCCchhHHHHHHHHHHHhhhhhhceeEEEEechhHHHHHHHHHHhhhhc
Confidence 0000 001111122334455555555555556666777777777778999999999999999998876543
Q ss_pred c-------------cCCCCCeEEEEccCCCCHHHHhhhcCCCCCCCcEEEEeCCCcccccCCCCeEEEEeCCCccceeec
Q 006122 303 S-------------KKNSSGLIILPLYSGLSRAEQEQVFSPTPRGKRKVVISTNIAETSLTLEGIVYVVDSGFSKQRFYN 369 (660)
Q Consensus 303 ~-------------~~~~~~~~v~~lh~~l~~~~r~~v~~~f~~g~~~vlvaT~i~e~Gidip~v~~VId~g~~k~~~~~ 369 (660)
. ..-..+..++.+||+|++++|..+|+.|.....-|++|||++++|+|+|+|+.||.+ |
T Consensus 452 ~~e~~s~~~~s~g~~~l~~~~k~~rLHGsm~QeeRts~f~~Fs~~~~~VLLcTDVAaRGLDlP~V~~vVQY--------d 523 (708)
T KOG0348|consen 452 HLEGSSGAPDSEGLPPLFMDLKFYRLHGSMEQEERTSVFQEFSHSRRAVLLCTDVAARGLDLPHVGLVVQY--------D 523 (708)
T ss_pred ccccccCCcccCCChhhhhcceEEEecCchhHHHHHHHHHhhccccceEEEehhhhhccCCCCCcCeEEEe--------C
Confidence 1 011124569999999999999999999999999999999999999999999999984 4
Q ss_pred CCCCcccceeeecCHHhHHHhhcccCCC-CCcEEEEccC--hHHhhh
Q 006122 370 PISDIENLVVAPISKASARQRAGRAGRV-RPGKCYRLYT--EEYFVK 413 (660)
Q Consensus 370 ~~~~~~~l~~~~~s~~~~~QR~GRaGR~-~~G~~~~l~~--~~~~~~ 413 (660)
+ |.+.++|+||+||+.|. ..|....+.. +.+|.+
T Consensus 524 ~----------P~s~adylHRvGRTARaG~kG~alLfL~P~Eaey~~ 560 (708)
T KOG0348|consen 524 P----------PFSTADYLHRVGRTARAGEKGEALLFLLPSEAEYVN 560 (708)
T ss_pred C----------CCCHHHHHHHhhhhhhccCCCceEEEecccHHHHHH
Confidence 4 88999999999999998 6777665554 455555
No 51
>KOG0339 consensus ATP-dependent RNA helicase [RNA processing and modification]
Probab=100.00 E-value=2.5e-33 Score=283.03 Aligned_cols=342 Identities=21% Similarity=0.224 Sum_probs=255.6
Q ss_pred cccCCCCCCCccchHhHHHHhcCCCcHHHHHHHHHHHhcCCEEEEEcCCCCcHH--HHHHHHHHhcc-----ccCCCeEE
Q 006122 26 SSSLSSASSIGYGYASIEKQRQRLPVYKYRTAILYLVETHATTIIVGETGSGKT--TQIPQYLKEAG-----WADGGRVI 98 (660)
Q Consensus 26 ~~~~~~~~~~~~~~~~~~~~~~~lPi~~~~~~i~~~l~~~~~vii~apTGsGKT--~~ip~~l~~~~-----~~~~~~~i 98 (660)
.++|..+.|......++...-..-|.. .|.+++.....++.++-.|-|||||| ++-|.+..... ...++-.+
T Consensus 222 vtsfeh~gfDkqLm~airk~Ey~kptp-iq~qalptalsgrdvigIAktgSgktaAfi~pm~~himdq~eL~~g~gPi~v 300 (731)
T KOG0339|consen 222 VTSFEHFGFDKQLMTAIRKSEYEKPTP-IQCQALPTALSGRDVIGIAKTGSGKTAAFIWPMIVHIMDQPELKPGEGPIGV 300 (731)
T ss_pred cchhhhcCchHHHHHHHhhhhcccCCc-ccccccccccccccchheeeccCcchhHHHHHHHHHhcchhhhcCCCCCeEE
Confidence 356777778777777666655555543 34556666667888999999999999 56666554321 12345569
Q ss_pred EEeCchHHHHH--HHHHHHHHHhCCeeeeEEeeeeecccc-CCCCCceEEEechHHHHHHHhcCC-CCCCCcEEEEeCCC
Q 006122 99 ACTQPRRLAVQ--AVASRVAEEMGVKVGEEVGYTIRFEDF-TNKDLTAIKFLTDGVLLREMMDDP-LLTKYSVIMVDEAH 174 (660)
Q Consensus 99 ~v~p~r~la~~--~~~~~~~~~~~~~~~~~vg~~~~~~~~-~~~~~~~I~v~T~~~ll~~l~~~~-~l~~~~~iIiDE~H 174 (660)
+|+|+|+++.| +.++++.+.+|+.+....|....++.. .....+.|+|+|||+|+.++.-+. .+.+++++|+||++
T Consensus 301 ilvPTrela~Qi~~eaKkf~K~ygl~~v~~ygGgsk~eQ~k~Lk~g~EivVaTPgRlid~VkmKatn~~rvS~LV~DEad 380 (731)
T KOG0339|consen 301 ILVPTRELASQIFSEAKKFGKAYGLRVVAVYGGGSKWEQSKELKEGAEIVVATPGRLIDMVKMKATNLSRVSYLVLDEAD 380 (731)
T ss_pred EEeccHHHHHHHHHHHHHhhhhccceEEEeecCCcHHHHHHhhhcCCeEEEechHHHHHHHHhhcccceeeeEEEEechh
Confidence 99999999998 778899999999988877754433322 222379999999999999985544 49999999999999
Q ss_pred cCCcChhHHHHHHHHHHHhcCCceEEEeeccc--chHHHHHHhhcCCCCCCCcccccCCCCCCeEEEECCccccce-EEe
Q 006122 175 ERSISTDILLGLLKKIQRCRSDLRLIISSATI--EAKSMSAFFHARKGRRGLEGVELVPRLEPAILSVEGRGFNVQ-IHY 251 (660)
Q Consensus 175 er~~~~d~ll~~l~~~~~~~~~~kii~~SAT~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~-~~~ 251 (660)
|+.++.|...+-......+++.|.+++|||. .++.+++=+-..+++.... .+......+. ..+
T Consensus 381 -rmfdmGfe~qVrSI~~hirpdrQtllFsaTf~~kIe~lard~L~dpVrvVqg-------------~vgean~dITQ~V~ 446 (731)
T KOG0339|consen 381 -RMFDMGFEPQVRSIKQHIRPDRQTLLFSATFKKKIEKLARDILSDPVRVVQG-------------EVGEANEDITQTVS 446 (731)
T ss_pred -hhhccccHHHHHHHHhhcCCcceEEEeeccchHHHHHHHHHHhcCCeeEEEe-------------ehhccccchhheee
Confidence 9999999998888888899999999999999 5566665544445321110 0100011111 111
Q ss_pred cCCCchhHHHHHHHHHHHHHhcCCCCcEEEEcCCHHHHHHHHHHHHHHhhhccCCCCCeEEEEccCCCCHHHHhhhcCCC
Q 006122 252 VEEPVSDYVQAAVSTVLLIHDKEPPGDILVFLTGQDDIDATIQLLTEEARTSKKNSSGLIILPLYSGLSRAEQEQVFSPT 331 (660)
Q Consensus 252 ~~~~~~~~~~~~~~~~~~~~~~~~~~~iLVF~~~~~~i~~l~~~L~~~~~~~~~~~~~~~v~~lh~~l~~~~r~~v~~~f 331 (660)
.-......+ ...+.++......|++|+|+.-+.++++++..|.-. ++.+..+||++.+.+|.+++..|
T Consensus 447 V~~s~~~Kl---~wl~~~L~~f~S~gkvlifVTKk~~~e~i~a~Lklk---------~~~v~llhgdkdqa~rn~~ls~f 514 (731)
T KOG0339|consen 447 VCPSEEKKL---NWLLRHLVEFSSEGKVLIFVTKKADAEEIAANLKLK---------GFNVSLLHGDKDQAERNEVLSKF 514 (731)
T ss_pred eccCcHHHH---HHHHHHhhhhccCCcEEEEEeccCCHHHHHHHhccc---------cceeeeecCchhhHHHHHHHHHH
Confidence 111111222 222334444556789999999999999999998655 89999999999999999999999
Q ss_pred CCCCcEEEEeCCCcccccCCCCeEEEEeCCCccceeecCCCCcccceeeecCHHhHHHhhcccCCC-CCcEEEEccChHH
Q 006122 332 PRGKRKVVISTNIAETSLTLEGIVYVVDSGFSKQRFYNPISDIENLVVAPISKASARQRAGRAGRV-RPGKCYRLYTEEY 410 (660)
Q Consensus 332 ~~g~~~vlvaT~i~e~Gidip~v~~VId~g~~k~~~~~~~~~~~~l~~~~~s~~~~~QR~GRaGR~-~~G~~~~l~~~~~ 410 (660)
+.+...|+++|+++++|+|||++..||++++ ..+...+.||+||+||. ..|..|.|+++.+
T Consensus 515 Kkk~~~VlvatDvaargldI~~ikTVvnyD~------------------ardIdththrigrtgRag~kGvayTlvTeKD 576 (731)
T KOG0339|consen 515 KKKRKPVLVATDVAARGLDIPSIKTVVNYDF------------------ARDIDTHTHRIGRTGRAGEKGVAYTLVTEKD 576 (731)
T ss_pred hhcCCceEEEeeHhhcCCCccccceeecccc------------------cchhHHHHHHhhhcccccccceeeEEechhh
Confidence 9999999999999999999999999999766 44666777999999999 7799999999876
Q ss_pred hh
Q 006122 411 FV 412 (660)
Q Consensus 411 ~~ 412 (660)
-+
T Consensus 577 a~ 578 (731)
T KOG0339|consen 577 AE 578 (731)
T ss_pred HH
Confidence 54
No 52
>KOG0347 consensus RNA helicase [RNA processing and modification]
Probab=100.00 E-value=4.5e-35 Score=298.61 Aligned_cols=349 Identities=21% Similarity=0.236 Sum_probs=245.5
Q ss_pred ccCCCCCCCccchHhHHHHhcCCCcHHHHHHHHHHHhcCCEEEEEcCCCCcHH--HHHHHHHH---------hc--cccC
Q 006122 27 SSLSSASSIGYGYASIEKQRQRLPVYKYRTAILYLVETHATTIIVGETGSGKT--TQIPQYLK---------EA--GWAD 93 (660)
Q Consensus 27 ~~~~~~~~~~~~~~~~~~~~~~lPi~~~~~~i~~~l~~~~~vii~apTGsGKT--~~ip~~l~---------~~--~~~~ 93 (660)
+-|.+++++...++++......-|...+...+..++.+..+++-.|.|||||| |-||.+.. +. ....
T Consensus 181 sAW~~l~lp~~iL~aL~~~gFs~Pt~IQsl~lp~ai~gk~DIlGaAeTGSGKTLAFGIPiv~~l~~~s~~s~e~~~~~~k 260 (731)
T KOG0347|consen 181 SAWKNLFLPMEILRALSNLGFSRPTEIQSLVLPAAIRGKVDILGAAETGSGKTLAFGIPIVERLLESSDDSQELSNTSAK 260 (731)
T ss_pred HHHhcCCCCHHHHHHHHhcCCCCCccchhhcccHhhccchhcccccccCCCceeeecchhhhhhhhccchHhhhhhHHhc
Confidence 46999999999999999999999999999999999998888999999999999 78887651 11 0112
Q ss_pred CCe--EEEEeCchHHHHH--HHHHHHHHHhCCeeeeEEeee-e-eccccCCCCCceEEEechHHHHHHHhcCCC----CC
Q 006122 94 GGR--VIACTQPRRLAVQ--AVASRVAEEMGVKVGEEVGYT-I-RFEDFTNKDLTAIKFLTDGVLLREMMDDPL----LT 163 (660)
Q Consensus 94 ~~~--~i~v~p~r~la~~--~~~~~~~~~~~~~~~~~vg~~-~-~~~~~~~~~~~~I~v~T~~~ll~~l~~~~~----l~ 163 (660)
..+ .++++|+|+||.| +-...++...++.+..++|.- + ..+...+. .++|+|+|||+|...+..+.. +.
T Consensus 261 ~~k~~~LV~tPTRELa~QV~~Hl~ai~~~t~i~v~si~GGLavqKQqRlL~~-~p~IVVATPGRlweli~e~n~~l~~~k 339 (731)
T KOG0347|consen 261 YVKPIALVVTPTRELAHQVKQHLKAIAEKTQIRVASITGGLAVQKQQRLLNQ-RPDIVVATPGRLWELIEEDNTHLGNFK 339 (731)
T ss_pred cCcceeEEecChHHHHHHHHHHHHHhccccCeEEEEeechhHHHHHHHHHhc-CCCEEEecchHHHHHHHhhhhhhhhhh
Confidence 233 6999999999988 334456667788888888832 2 22333344 799999999999998876542 78
Q ss_pred CCcEEEEeCCCcCCcChhH---HHHHHHHHH--HhcCCceEEEeecccchHHHHHHhhcCCC--CC-CCc-ccccCCCCC
Q 006122 164 KYSVIMVDEAHERSISTDI---LLGLLKKIQ--RCRSDLRLIISSATIEAKSMSAFFHARKG--RR-GLE-GVELVPRLE 234 (660)
Q Consensus 164 ~~~~iIiDE~Her~~~~d~---ll~~l~~~~--~~~~~~kii~~SAT~~~~~~~~~~~~~~~--~~-~~~-~~~~~~~~~ 234 (660)
++.++|+||++ |++.-.. +..+++.+. +.....|.+++|||++....+..-..... .. ... .....
T Consensus 340 ~vkcLVlDEaD-RmvekghF~Els~lL~~L~e~~~~~qrQTlVFSATlt~~~~~~~~~~~k~~~k~~~~~~kiq~L---- 414 (731)
T KOG0347|consen 340 KVKCLVLDEAD-RMVEKGHFEELSKLLKHLNEEQKNRQRQTLVFSATLTLVLQQPLSSSRKKKDKEDELNAKIQHL---- 414 (731)
T ss_pred hceEEEEccHH-HHhhhccHHHHHHHHHHhhhhhcccccceEEEEEEeehhhcChhHHhhhccchhhhhhHHHHHH----
Confidence 89999999999 7765544 334445444 24456899999999854433221111000 00 000 00000
Q ss_pred CeEEEECCccccceEEecCCCchhHHHHHHHHHHH-----------HHhcCCCCcEEEEcCCHHHHHHHHHHHHHHhhhc
Q 006122 235 PAILSVEGRGFNVQIHYVEEPVSDYVQAAVSTVLL-----------IHDKEPPGDILVFLTGQDDIDATIQLLTEEARTS 303 (660)
Q Consensus 235 ~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~-----------~~~~~~~~~iLVF~~~~~~i~~l~~~L~~~~~~~ 303 (660)
...+.+.+. | ++.-+. +...-.....+..+. .....-+|.+|||||+.+.+.+++-.|...
T Consensus 415 mk~ig~~~k--p-kiiD~t-~q~~ta~~l~Es~I~C~~~eKD~ylyYfl~ryPGrTlVF~NsId~vKRLt~~L~~L---- 486 (731)
T KOG0347|consen 415 MKKIGFRGK--P-KIIDLT-PQSATASTLTESLIECPPLEKDLYLYYFLTRYPGRTLVFCNSIDCVKRLTVLLNNL---- 486 (731)
T ss_pred HHHhCccCC--C-eeEecC-cchhHHHHHHHHhhcCCccccceeEEEEEeecCCceEEEechHHHHHHHHHHHhhc----
Confidence 000111111 1 111110 111111111221111 112335799999999999999999999775
Q ss_pred cCCCCCeEEEEccCCCCHHHHhhhcCCCCCCCcEEEEeCCCcccccCCCCeEEEEeCCCccceeecCCCCcccceeeecC
Q 006122 304 KKNSSGLIILPLYSGLSRAEQEQVFSPTPRGKRKVVISTNIAETSLTLEGIVYVVDSGFSKQRFYNPISDIENLVVAPIS 383 (660)
Q Consensus 304 ~~~~~~~~v~~lh~~l~~~~r~~v~~~f~~g~~~vlvaT~i~e~Gidip~v~~VId~g~~k~~~~~~~~~~~~l~~~~~s 383 (660)
++..+++|+.|.+.+|.+.++.|++..--||+||++|++|+|||+|.+||+|-. |-+
T Consensus 487 -----~i~p~~LHA~M~QKqRLknLEkF~~~~~~VLiaTDVAARGLDIp~V~HVIHYqV------------------Prt 543 (731)
T KOG0347|consen 487 -----DIPPLPLHASMIQKQRLKNLEKFKQSPSGVLIATDVAARGLDIPGVQHVIHYQV------------------PRT 543 (731)
T ss_pred -----CCCCchhhHHHHHHHHHHhHHHHhcCCCeEEEeehhhhccCCCCCcceEEEeec------------------CCc
Confidence 788899999999999999999999999999999999999999999999999655 666
Q ss_pred HHhHHHhhcccCCC-CCcEEEEccChHHhh
Q 006122 384 KASARQRAGRAGRV-RPGKCYRLYTEEYFV 412 (660)
Q Consensus 384 ~~~~~QR~GRaGR~-~~G~~~~l~~~~~~~ 412 (660)
..-|+||.||+.|. ..|....++.+....
T Consensus 544 seiYVHRSGRTARA~~~Gvsvml~~P~e~~ 573 (731)
T KOG0347|consen 544 SEIYVHRSGRTARANSEGVSVMLCGPQEVG 573 (731)
T ss_pred cceeEecccccccccCCCeEEEEeChHHhH
Confidence 66777999999999 899999999887643
No 53
>PRK09751 putative ATP-dependent helicase Lhr; Provisional
Probab=100.00 E-value=2.1e-32 Score=321.06 Aligned_cols=294 Identities=19% Similarity=0.195 Sum_probs=193.8
Q ss_pred EEcCCCCcHH--HHHHHHHHhcc----------ccCCCeEEEEeCchHHHHHHHHHH------HHH--------HhCCee
Q 006122 70 IVGETGSGKT--TQIPQYLKEAG----------WADGGRVIACTQPRRLAVQAVASR------VAE--------EMGVKV 123 (660)
Q Consensus 70 i~apTGsGKT--~~ip~~l~~~~----------~~~~~~~i~v~p~r~la~~~~~~~------~~~--------~~~~~~ 123 (660)
|+|||||||| +.+|.+..... ...+.++||++|+|+|+.+..... +.. ..++.+
T Consensus 1 V~APTGSGKTLAA~LpaL~~Ll~~~~~~~~~~~~~~~~raLYISPLKALa~Dv~~~L~~pl~~i~~~~~~~g~~~~~i~V 80 (1490)
T PRK09751 1 VIAPTGSGKTLAAFLYALDRLFREGGEDTREAHKRKTSRILYISPIKALGTDVQRNLQIPLKGIADERRRRGETEVNLRV 80 (1490)
T ss_pred CcCCCCcHHHHHHHHHHHHHHHhcccccccccccCCCCEEEEEeChHHHHHHHHHHHHHHHHhhhhhhhhcccccCceEE
Confidence 5799999999 55554422211 012467899999999998844321 110 135666
Q ss_pred eeEEeeeeecccc-CCCCCceEEEechHHHHHHHhcC--CCCCCCcEEEEeCCCcCCcC--hhHHHHHHHHHHHh-cCCc
Q 006122 124 GEEVGYTIRFEDF-TNKDLTAIKFLTDGVLLREMMDD--PLLTKYSVIMVDEAHERSIS--TDILLGLLKKIQRC-RSDL 197 (660)
Q Consensus 124 ~~~vg~~~~~~~~-~~~~~~~I~v~T~~~ll~~l~~~--~~l~~~~~iIiDE~Her~~~--~d~ll~~l~~~~~~-~~~~ 197 (660)
+..+|.....+.. .....++|+|+||+.|..++.++ ..++++++|||||+|+..-. ...+...+.++... ..+.
T Consensus 81 ~vrtGDt~~~eR~rll~~ppdILVTTPEsL~~LLtsk~r~~L~~Vr~VIVDE~H~L~g~kRG~~Lel~LeRL~~l~~~~~ 160 (1490)
T PRK09751 81 GIRTGDTPAQERSKLTRNPPDILITTPESLYLMLTSRARETLRGVETVIIDEVHAVAGSKRGAHLALSLERLDALLHTSA 160 (1490)
T ss_pred EEEECCCCHHHHHHHhcCCCCEEEecHHHHHHHHhhhhhhhhccCCEEEEecHHHhcccccccHHHHHHHHHHHhCCCCC
Confidence 7777744333321 11225899999999998876543 24899999999999943211 11233344444443 3578
Q ss_pred eEEEeeccc-chHHHHHHhhcC-CCCCCCcccccCCCCCCeEEEEC-CccccceEEecCCCc------------------
Q 006122 198 RLIISSATI-EAKSMSAFFHAR-KGRRGLEGVELVPRLEPAILSVE-GRGFNVQIHYVEEPV------------------ 256 (660)
Q Consensus 198 kii~~SAT~-~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~-~~~~~v~~~~~~~~~------------------ 256 (660)
|+|++|||+ |.+.+++|++.. +.. ++..+ .+..++++.......
T Consensus 161 QrIgLSATI~n~eevA~~L~g~~pv~---------------Iv~~~~~r~~~l~v~vp~~d~~~~~~~~~~~~~~~~~~r 225 (1490)
T PRK09751 161 QRIGLSATVRSASDVAAFLGGDRPVT---------------VVNPPAMRHPQIRIVVPVANMDDVSSVASGTGEDSHAGR 225 (1490)
T ss_pred eEEEEEeeCCCHHHHHHHhcCCCCEE---------------EECCCCCcccceEEEEecCchhhccccccccccccchhh
Confidence 999999999 888999999753 210 11100 011111111100000
Q ss_pred hhHHH-HHHHHHHHHHhcCCCCcEEEEcCCHHHHHHHHHHHHHHhhhcc------------------------CCCCCeE
Q 006122 257 SDYVQ-AAVSTVLLIHDKEPPGDILVFLTGQDDIDATIQLLTEEARTSK------------------------KNSSGLI 311 (660)
Q Consensus 257 ~~~~~-~~~~~~~~~~~~~~~~~iLVF~~~~~~i~~l~~~L~~~~~~~~------------------------~~~~~~~ 311 (660)
...+. .....++... ...+++||||||++.++.++..|++...... .+.....
T Consensus 226 ~~~i~~~v~~~il~~i--~~~~stLVFvNSR~~AE~La~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i 303 (1490)
T PRK09751 226 EGSIWPYIETGILDEV--LRHRSTIVFTNSRGLAEKLTARLNELYAARLQRSPSIAVDAAHFESTSGATSNRVQSSDVFI 303 (1490)
T ss_pred hhhhhHHHHHHHHHHH--hcCCCEEEECCCHHHHHHHHHHHHHhhhhhccccccccchhhhhhhccccchhcccccccee
Confidence 00000 0111222222 2357799999999999999999987532100 0001234
Q ss_pred EEEccCCCCHHHHhhhcCCCCCCCcEEEEeCCCcccccCCCCeEEEEeCCCccceeecCCCCcccceeeecCHHhHHHhh
Q 006122 312 ILPLYSGLSRAEQEQVFSPTPRGKRKVVISTNIAETSLTLEGIVYVVDSGFSKQRFYNPISDIENLVVAPISKASARQRA 391 (660)
Q Consensus 312 v~~lh~~l~~~~r~~v~~~f~~g~~~vlvaT~i~e~Gidip~v~~VId~g~~k~~~~~~~~~~~~l~~~~~s~~~~~QR~ 391 (660)
+..|||+|++++|..+++.|++|++++||||+++++||||++|++||++|. |.|.++|+||+
T Consensus 304 a~~HHGsLSkeeR~~IE~~fK~G~LrvLVATssLELGIDIg~VDlVIq~gs------------------P~sVas~LQRi 365 (1490)
T PRK09751 304 ARSHHGSVSKEQRAITEQALKSGELRCVVATSSLELGIDMGAVDLVIQVAT------------------PLSVASGLQRI 365 (1490)
T ss_pred eeeccccCCHHHHHHHHHHHHhCCceEEEeCcHHHccCCcccCCEEEEeCC------------------CCCHHHHHHHh
Confidence 789999999999999999999999999999999999999999999999777 89999999999
Q ss_pred cccCCCC
Q 006122 392 GRAGRVR 398 (660)
Q Consensus 392 GRaGR~~ 398 (660)
|||||..
T Consensus 366 GRAGR~~ 372 (1490)
T PRK09751 366 GRAGHQV 372 (1490)
T ss_pred CCCCCCC
Confidence 9999973
No 54
>KOG0332 consensus ATP-dependent RNA helicase [RNA processing and modification]
Probab=100.00 E-value=4.2e-32 Score=265.34 Aligned_cols=346 Identities=19% Similarity=0.195 Sum_probs=253.5
Q ss_pred cccccccCCCCCCCccchHhHHHHhcCCCcHHHHHHHHHHHh-cCCEEEEEcCCCCcHHHHHHHHHHh--ccccCCCeEE
Q 006122 22 VVFLSSSLSSASSIGYGYASIEKQRQRLPVYKYRTAILYLVE-THATTIIVGETGSGKTTQIPQYLKE--AGWADGGRVI 98 (660)
Q Consensus 22 ~~~~~~~~~~~~~~~~~~~~~~~~~~~lPi~~~~~~i~~~l~-~~~~vii~apTGsGKT~~ip~~l~~--~~~~~~~~~i 98 (660)
+.+--.+|..+.+++...+.+...+.+-|...+...+.-.+. ..+++|.++..|+|||+.....++. ......++++
T Consensus 85 PlyS~ksFeeL~LkPellkgly~M~F~kPskIQe~aLPlll~~Pp~nlIaQsqsGtGKTaaFvL~MLsrvd~~~~~PQ~i 164 (477)
T KOG0332|consen 85 PLYSAKSFEELRLKPELLKGLYAMKFQKPSKIQETALPLLLAEPPQNLIAQSQSGTGKTAAFVLTMLSRVDPDVVVPQCI 164 (477)
T ss_pred CccccccHHhhCCCHHHHhHHHHhccCCcchHHHhhcchhhcCCchhhhhhhcCCCchhHHHHHHHHHhcCccccCCCce
Confidence 344456899999999999999999889998766555544443 3578999999999999544433332 2222345678
Q ss_pred EEeCchHHHHHHHHHHHHHHhCCeeeeEEeeeeeccccCCC--CCceEEEechHHHHHHHhc-CC-CCCCCcEEEEeCCC
Q 006122 99 ACTQPRRLAVQAVASRVAEEMGVKVGEEVGYTIRFEDFTNK--DLTAIKFLTDGVLLREMMD-DP-LLTKYSVIMVDEAH 174 (660)
Q Consensus 99 ~v~p~r~la~~~~~~~~~~~~~~~~~~~vg~~~~~~~~~~~--~~~~I~v~T~~~ll~~l~~-~~-~l~~~~~iIiDE~H 174 (660)
+++|+|+++-|.. .+-.++|--.+....|.++....... -..+|+++|||.+++++.. .. .+.++.++|+|||+
T Consensus 165 CLaPtrELA~Q~~--eVv~eMGKf~~ita~yair~sk~~rG~~i~eqIviGTPGtv~Dlm~klk~id~~kikvfVlDEAD 242 (477)
T KOG0332|consen 165 CLAPTRELAPQTG--EVVEEMGKFTELTASYAIRGSKAKRGNKLTEQIVIGTPGTVLDLMLKLKCIDLEKIKVFVLDEAD 242 (477)
T ss_pred eeCchHHHHHHHH--HHHHHhcCceeeeEEEEecCcccccCCcchhheeeCCCccHHHHHHHHHhhChhhceEEEecchh
Confidence 8999999998832 23445665555556677776533221 1578999999999999876 33 38899999999999
Q ss_pred cCCcChh-HHHHHHHHHHHhcCCceEEEeeccc--chHHHHHHhhcCCCCCCCcccccCCCCCCeEEEECC---ccccce
Q 006122 175 ERSISTD-ILLGLLKKIQRCRSDLRLIISSATI--EAKSMSAFFHARKGRRGLEGVELVPRLEPAILSVEG---RGFNVQ 248 (660)
Q Consensus 175 er~~~~d-~ll~~l~~~~~~~~~~kii~~SAT~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~v~ 248 (660)
-++++. +...-++......++.+++++|||. ....|+.-+-..+ .++.+.. ...+++
T Consensus 243 -~Mi~tqG~~D~S~rI~~~lP~~~QllLFSATf~e~V~~Fa~kivpn~----------------n~i~Lk~eel~L~~Ik 305 (477)
T KOG0332|consen 243 -VMIDTQGFQDQSIRIMRSLPRNQQLLLFSATFVEKVAAFALKIVPNA----------------NVIILKREELALDNIK 305 (477)
T ss_pred -hhhhcccccccchhhhhhcCCcceEEeeechhHHHHHHHHHHhcCCC----------------ceeeeehhhccccchh
Confidence 344443 3333344444455689999999998 3344444332222 1333332 346788
Q ss_pred EEecCCCchhHHHHHHHHHHHHHhcCCCCcEEEEcCCHHHHHHHHHHHHHHhhhccCCCCCeEEEEccCCCCHHHHhhhc
Q 006122 249 IHYVEEPVSDYVQAAVSTVLLIHDKEPPGDILVFLTGQDDIDATIQLLTEEARTSKKNSSGLIILPLYSGLSRAEQEQVF 328 (660)
Q Consensus 249 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iLVF~~~~~~i~~l~~~L~~~~~~~~~~~~~~~v~~lh~~l~~~~r~~v~ 328 (660)
.+|+....++.. ...+..+.....-|+.+|||.|++.+..++..+.+. +..|..+||.|.-++|..+.
T Consensus 306 Qlyv~C~~~~~K---~~~l~~lyg~~tigqsiIFc~tk~ta~~l~~~m~~~---------Gh~V~~l~G~l~~~~R~~ii 373 (477)
T KOG0332|consen 306 QLYVLCACRDDK---YQALVNLYGLLTIGQSIIFCHTKATAMWLYEEMRAE---------GHQVSLLHGDLTVEQRAAII 373 (477)
T ss_pred hheeeccchhhH---HHHHHHHHhhhhhhheEEEEeehhhHHHHHHHHHhc---------CceeEEeeccchhHHHHHHH
Confidence 888887765533 333334444445688999999999999999999887 89999999999999999999
Q ss_pred CCCCCCCcEEEEeCCCcccccCCCCeEEEEeCCCccceeecCCCCcccceeeecCHHhHHHhhcccCCC-CCcEEEEccC
Q 006122 329 SPTPRGKRKVVISTNIAETSLTLEGIVYVVDSGFSKQRFYNPISDIENLVVAPISKASARQRAGRAGRV-RPGKCYRLYT 407 (660)
Q Consensus 329 ~~f~~g~~~vlvaT~i~e~Gidip~v~~VId~g~~k~~~~~~~~~~~~l~~~~~s~~~~~QR~GRaGR~-~~G~~~~l~~ 407 (660)
+.|+.|.-+|+|+||+.++|||++.|.+||++++. .... ...+.+.|.||+||+||. +.|.++.++.
T Consensus 374 ~~Fr~g~~kVLitTnV~ARGiDv~qVs~VvNydlP--------~~~~----~~pD~etYlHRiGRtGRFGkkG~a~n~v~ 441 (477)
T KOG0332|consen 374 DRFREGKEKVLITTNVCARGIDVAQVSVVVNYDLP--------VKYT----GEPDYETYLHRIGRTGRFGKKGLAINLVD 441 (477)
T ss_pred HHHhcCcceEEEEechhhcccccceEEEEEecCCc--------cccC----CCCCHHHHHHHhcccccccccceEEEeec
Confidence 99999999999999999999999999999997762 2111 136788999999999999 8999999987
Q ss_pred hHH
Q 006122 408 EEY 410 (660)
Q Consensus 408 ~~~ 410 (660)
...
T Consensus 442 ~~~ 444 (477)
T KOG0332|consen 442 DKD 444 (477)
T ss_pred ccC
Confidence 543
No 55
>TIGR00580 mfd transcription-repair coupling factor (mfd). All proteins in this family for which functions are known are DNA-dependent ATPases that function in the process of transcription-coupled DNA repair in which the repair of the transcribed strand of actively transacribed genes is repaired at a higher rate than the repair of non-transcribed regions of the genome and than the non-transcribed strand of the same gene. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University). This family is closely related to the RecG and UvrB families.
Probab=100.00 E-value=2.1e-31 Score=305.15 Aligned_cols=304 Identities=17% Similarity=0.183 Sum_probs=205.9
Q ss_pred cHHHHHHHHHHHhcC------CEEEEEcCCCCcHHHHHHHHHHhccccCCCeEEEEeCchHHHHHHHHH--HHHHHhCCe
Q 006122 51 VYKYRTAILYLVETH------ATTIIVGETGSGKTTQIPQYLKEAGWADGGRVIACTQPRRLAVQAVAS--RVAEEMGVK 122 (660)
Q Consensus 51 i~~~~~~i~~~l~~~------~~vii~apTGsGKT~~ip~~l~~~~~~~~~~~i~v~p~r~la~~~~~~--~~~~~~~~~ 122 (660)
..+.|.+.++.+.++ .+.+++||||||||..+-..++.. ...+.++++++|++.|+.|.+.. ......+..
T Consensus 452 ~T~~Q~~aI~~I~~d~~~~~~~d~Ll~adTGsGKT~val~a~l~a-l~~g~qvlvLvPT~~LA~Q~~~~f~~~~~~~~i~ 530 (926)
T TIGR00580 452 ETPDQLKAIEEIKADMESPRPMDRLVCGDVGFGKTEVAMRAAFKA-VLDGKQVAVLVPTTLLAQQHFETFKERFANFPVT 530 (926)
T ss_pred CCHHHHHHHHHHHhhhcccCcCCEEEECCCCccHHHHHHHHHHHH-HHhCCeEEEEeCcHHHHHHHHHHHHHHhccCCcE
Confidence 456666666666553 578999999999994333222222 22456789999999998885433 222334566
Q ss_pred eeeEEeeeeecccc-----CCCCCceEEEechHHHHHHHhcCCCCCCCcEEEEeCCCcCCcChhHHHHHHHHHHHhcCCc
Q 006122 123 VGEEVGYTIRFEDF-----TNKDLTAIKFLTDGVLLREMMDDPLLTKYSVIMVDEAHERSISTDILLGLLKKIQRCRSDL 197 (660)
Q Consensus 123 ~~~~vg~~~~~~~~-----~~~~~~~I~v~T~~~ll~~l~~~~~l~~~~~iIiDE~Her~~~~d~ll~~l~~~~~~~~~~ 197 (660)
++...|+....+.. ...+..+|+|+||..+ ..+..+.++++|||||+|..+. .....+....++.
T Consensus 531 v~~Lsg~~~~~e~~~~~~~l~~g~~dIVIGTp~ll----~~~v~f~~L~llVIDEahrfgv------~~~~~L~~~~~~~ 600 (926)
T TIGR00580 531 IELLSRFRSAKEQNEILKELASGKIDILIGTHKLL----QKDVKFKDLGLLIIDEEQRFGV------KQKEKLKELRTSV 600 (926)
T ss_pred EEEEeccccHHHHHHHHHHHHcCCceEEEchHHHh----hCCCCcccCCEEEeecccccch------hHHHHHHhcCCCC
Confidence 66665543211111 1122589999999533 3344588999999999995332 2223344456788
Q ss_pred eEEEeecccchHHHHHHhhcCCCCCCCcccccCCCCCCeEEEEC-CccccceEEecCCCchhHHHHHHHHHHHHHhcCCC
Q 006122 198 RLIISSATIEAKSMSAFFHARKGRRGLEGVELVPRLEPAILSVE-GRGFNVQIHYVEEPVSDYVQAAVSTVLLIHDKEPP 276 (660)
Q Consensus 198 kii~~SAT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 276 (660)
++++||||+.+..+...+.... .+..+..+ ....+++.++..... ..+ ...+.... ..+
T Consensus 601 ~vL~~SATpiprtl~~~l~g~~--------------d~s~I~~~p~~R~~V~t~v~~~~~-~~i---~~~i~~el--~~g 660 (926)
T TIGR00580 601 DVLTLSATPIPRTLHMSMSGIR--------------DLSIIATPPEDRLPVRTFVMEYDP-ELV---REAIRREL--LRG 660 (926)
T ss_pred CEEEEecCCCHHHHHHHHhcCC--------------CcEEEecCCCCccceEEEEEecCH-HHH---HHHHHHHH--HcC
Confidence 9999999997766654332211 11123222 223456555543221 111 11122111 246
Q ss_pred CcEEEEcCCHHHHHHHHHHHHHHhhhccCCCCCeEEEEccCCCCHHHHhhhcCCCCCCCcEEEEeCCCcccccCCCCeEE
Q 006122 277 GDILVFLTGQDDIDATIQLLTEEARTSKKNSSGLIILPLYSGLSRAEQEQVFSPTPRGKRKVVISTNIAETSLTLEGIVY 356 (660)
Q Consensus 277 ~~iLVF~~~~~~i~~l~~~L~~~~~~~~~~~~~~~v~~lh~~l~~~~r~~v~~~f~~g~~~vlvaT~i~e~Gidip~v~~ 356 (660)
++++||||+.++++.+++.|.+.. +++.+..+||+|++++|.++++.|++|+.+|||||+++++|||+|++++
T Consensus 661 ~qv~if~n~i~~~e~l~~~L~~~~-------p~~~v~~lHG~m~~~eRe~im~~F~~Gk~~ILVaT~iie~GIDIp~v~~ 733 (926)
T TIGR00580 661 GQVFYVHNRIESIEKLATQLRELV-------PEARIAIAHGQMTENELEEVMLEFYKGEFQVLVCTTIIETGIDIPNANT 733 (926)
T ss_pred CeEEEEECCcHHHHHHHHHHHHhC-------CCCeEEEecCCCCHHHHHHHHHHHHcCCCCEEEECChhhcccccccCCE
Confidence 789999999999999999998753 3678999999999999999999999999999999999999999999999
Q ss_pred EEeCCCccceeecCCCCcccceeeecCHHhHHHhhcccCCC-CCcEEEEccChH
Q 006122 357 VVDSGFSKQRFYNPISDIENLVVAPISKASARQRAGRAGRV-RPGKCYRLYTEE 409 (660)
Q Consensus 357 VId~g~~k~~~~~~~~~~~~l~~~~~s~~~~~QR~GRaGR~-~~G~~~~l~~~~ 409 (660)
||..+. . ..+.+++.||+||+||. +.|.||.++++.
T Consensus 734 VIi~~a--------~---------~~gls~l~Qr~GRvGR~g~~g~aill~~~~ 770 (926)
T TIGR00580 734 IIIERA--------D---------KFGLAQLYQLRGRVGRSKKKAYAYLLYPHQ 770 (926)
T ss_pred EEEecC--------C---------CCCHHHHHHHhcCCCCCCCCeEEEEEECCc
Confidence 997332 1 12455788999999999 899999998754
No 56
>COG1111 MPH1 ERCC4-like helicases [DNA replication, recombination, and repair]
Probab=100.00 E-value=3.8e-32 Score=277.37 Aligned_cols=328 Identities=20% Similarity=0.240 Sum_probs=223.9
Q ss_pred CcHHHHHHHHHHHhcCCEEEEEcCCCCcHHHHHHHHHHhccccCCCeEEEEeCchHHHHHHHHHHHHHHhCCe---eeeE
Q 006122 50 PVYKYRTAILYLVETHATTIIVGETGSGKTTQIPQYLKEAGWADGGRVIACTQPRRLAVQAVASRVAEEMGVK---VGEE 126 (660)
Q Consensus 50 Pi~~~~~~i~~~l~~~~~vii~apTGsGKT~~ip~~l~~~~~~~~~~~i~v~p~r~la~~~~~~~~~~~~~~~---~~~~ 126 (660)
-...+|..|......+ +++|+.|||-|||++....+.......++++++++|++-|+.|. +..+.+.++.. +...
T Consensus 15 e~R~YQ~~i~a~al~~-NtLvvlPTGLGKT~IA~~V~~~~l~~~~~kvlfLAPTKPLV~Qh-~~~~~~v~~ip~~~i~~l 92 (542)
T COG1111 15 EPRLYQLNIAAKALFK-NTLVVLPTGLGKTFIAAMVIANRLRWFGGKVLFLAPTKPLVLQH-AEFCRKVTGIPEDEIAAL 92 (542)
T ss_pred cHHHHHHHHHHHHhhc-CeEEEecCCccHHHHHHHHHHHHHHhcCCeEEEecCCchHHHHH-HHHHHHHhCCChhheeee
Confidence 3456777777665554 68999999999998777666544333344899999999999875 44456666654 3455
Q ss_pred EeeeeeccccCCCCCceEEEechHHHHHHHhcCCC-CCCCcEEEEeCCCcCCcChhHHHHHHHHHHHhcCCceEEEeecc
Q 006122 127 VGYTIRFEDFTNKDLTAIKFLTDGVLLREMMDDPL-LTKYSVIMVDEAHERSISTDILLGLLKKIQRCRSDLRLIISSAT 205 (660)
Q Consensus 127 vg~~~~~~~~~~~~~~~I~v~T~~~ll~~l~~~~~-l~~~~~iIiDE~Her~~~~d~ll~~l~~~~~~~~~~kii~~SAT 205 (660)
+|-....+....-.+.+|+|+||+.+.+-+..... +.+++++|+|||| |.........+.+...+...+..+++||||
T Consensus 93 tGev~p~~R~~~w~~~kVfvaTPQvveNDl~~Grid~~dv~~lifDEAH-RAvGnyAYv~Va~~y~~~~k~~~ilgLTAS 171 (542)
T COG1111 93 TGEVRPEEREELWAKKKVFVATPQVVENDLKAGRIDLDDVSLLIFDEAH-RAVGNYAYVFVAKEYLRSAKNPLILGLTAS 171 (542)
T ss_pred cCCCChHHHHHHHhhCCEEEeccHHHHhHHhcCccChHHceEEEechhh-hccCcchHHHHHHHHHHhccCceEEEEecC
Confidence 55222111222222689999999999998887766 9999999999999 777666777777878888888999999999
Q ss_pred c--chHHHHHHhhcCCCCCCCcccccCCCCCCeEEEECCccccceEEecCCC----------------------------
Q 006122 206 I--EAKSMSAFFHARKGRRGLEGVELVPRLEPAILSVEGRGFNVQIHYVEEP---------------------------- 255 (660)
Q Consensus 206 ~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~---------------------------- 255 (660)
+ +.+.+++...+.....-....+..+...+.+ ..+++.+....
T Consensus 172 PGs~~ekI~eV~~nLgIe~vevrTE~d~DV~~Yv-------~~~kve~ikV~lp~e~~~ir~~l~~~l~~~Lk~L~~~g~ 244 (542)
T COG1111 172 PGSDLEKIQEVVENLGIEKVEVRTEEDPDVRPYV-------KKIKVEWIKVDLPEEIKEIRDLLRDALKPRLKPLKELGV 244 (542)
T ss_pred CCCCHHHHHHHHHhCCcceEEEecCCCccHHHhh-------ccceeEEEeccCcHHHHHHHHHHHHHHHHHHHHHHHcCc
Confidence 9 7788888777654321111101111100000 01111111100
Q ss_pred --------c-------------------------------------------------hhHH------------------
Q 006122 256 --------V-------------------------------------------------SDYV------------------ 260 (660)
Q Consensus 256 --------~-------------------------------------------------~~~~------------------ 260 (660)
. ..|+
T Consensus 245 ~~~~~~~~~kdl~~~~~~~~~~a~~~~~~~~~~l~~~a~~~kl~~a~elletqGi~~~~~Yl~~l~e~~~~~~sk~a~~l 324 (542)
T COG1111 245 IESSSPVSKKDLLELRQIRLIMAKNEDSDKFRLLSVLAEAIKLAHALELLETQGIRPFYQYLEKLEEEATKGGSKAAKSL 324 (542)
T ss_pred eeccCcccHhHHHHHHHHHHHhccCccHHHHHHHHHHHHHHHHHHHHHHHHhhChHHHHHHHHHHHHHhcccchHHHHHH
Confidence 0 0000
Q ss_pred --------------------------HHHHHHHHHHHhcCCCCcEEEEcCCHHHHHHHHHHHHHHhhhccCCCCCeEE--
Q 006122 261 --------------------------QAAVSTVLLIHDKEPPGDILVFLTGQDDIDATIQLLTEEARTSKKNSSGLII-- 312 (660)
Q Consensus 261 --------------------------~~~~~~~~~~~~~~~~~~iLVF~~~~~~i~~l~~~L~~~~~~~~~~~~~~~v-- 312 (660)
+.+...+.......++..+|||+.-++.++.+.+.|.+...... ...+
T Consensus 325 ~~d~~~~~al~~~~~~~~~~v~HPKl~~l~eilke~~~k~~~~RvIVFT~yRdTae~i~~~L~~~~~~~~----~rFiGQ 400 (542)
T COG1111 325 LADPYFKRALRLLIRADESGVEHPKLEKLREILKEQLEKNGDSRVIVFTEYRDTAEEIVNFLKKIGIKAR----VRFIGQ 400 (542)
T ss_pred hcChhhHHHHHHHHHhccccCCCccHHHHHHHHHHHHhcCCCceEEEEehhHhHHHHHHHHHHhcCCcce----eEEeec
Confidence 00001111122334557899999999999999999987632110 0001
Q ss_pred --EEccCCCCHHHHhhhcCCCCCCCcEEEEeCCCcccccCCCCeEEEEeCCCccceeecCCCCcccceeeecCHHhHHHh
Q 006122 313 --LPLYSGLSRAEQEQVFSPTPRGKRKVVISTNIAETSLTLEGIVYVVDSGFSKQRFYNPISDIENLVVAPISKASARQR 390 (660)
Q Consensus 313 --~~lh~~l~~~~r~~v~~~f~~g~~~vlvaT~i~e~Gidip~v~~VId~g~~k~~~~~~~~~~~~l~~~~~s~~~~~QR 390 (660)
.-...||++.+|.++++.|++|..+|||||+++|.|+|||+++.||- |+| -.|..-++||
T Consensus 401 a~r~~~~GMsQkeQ~eiI~~Fr~Ge~nVLVaTSVgEEGLDIp~vDlVif--------YEp----------vpSeIR~IQR 462 (542)
T COG1111 401 ASREGDKGMSQKEQKEIIDQFRKGEYNVLVATSVGEEGLDIPEVDLVIF--------YEP----------VPSEIRSIQR 462 (542)
T ss_pred cccccccccCHHHHHHHHHHHhcCCceEEEEcccccccCCCCcccEEEE--------ecC----------CcHHHHHHHh
Confidence 11236899999999999999999999999999999999999999997 554 3466778899
Q ss_pred hcccCCCCCcEEEEccChH
Q 006122 391 AGRAGRVRPGKCYRLYTEE 409 (660)
Q Consensus 391 ~GRaGR~~~G~~~~l~~~~ 409 (660)
.||+||.++|.+|.|+++.
T Consensus 463 ~GRTGR~r~Grv~vLvt~g 481 (542)
T COG1111 463 KGRTGRKRKGRVVVLVTEG 481 (542)
T ss_pred hCccccCCCCeEEEEEecC
Confidence 9999999999999999876
No 57
>TIGR02621 cas3_GSU0051 CRISPR-associated helicase Cas3, Anaes-subtype. This model describes a CRISPR-associated putative DEAH-box helicase, or Cas3, of a subtype found in Actinomyces naeslundii MG1, Geobacter sulfurreducens PCA, Gemmata obscuriglobus UQM 2246, and Desulfotalea psychrophila. This protein includes both DEAH and HD motifs.
Probab=99.98 E-value=4.5e-31 Score=293.84 Aligned_cols=340 Identities=17% Similarity=0.172 Sum_probs=202.4
Q ss_pred CCcHHHHHHHHHHHhcCC-EEEEEcCCCCcHHHHHHHHHHhccc-cCC-CeEEEEeCchHHHHH--HHHHHHHHHh----
Q 006122 49 LPVYKYRTAILYLVETHA-TTIIVGETGSGKTTQIPQYLKEAGW-ADG-GRVIACTQPRRLAVQ--AVASRVAEEM---- 119 (660)
Q Consensus 49 lPi~~~~~~i~~~l~~~~-~vii~apTGsGKT~~ip~~l~~~~~-~~~-~~~i~v~p~r~la~~--~~~~~~~~~~---- 119 (660)
...+++|.+++..+..++ .+++.+|||||||..+..+++.... ... ...|+++|+|+|+.| ..++++.+.+
T Consensus 14 ~~PtpiQ~~~i~~il~G~~~v~~~apTGSGKTaa~aafll~~~~~~~~~~rLv~~vPtReLa~Qi~~~~~~~~k~l~~~~ 93 (844)
T TIGR02621 14 YSPFPWQLSLAERFVAGQPPESCSTPTGLGKTSIIAAWLLAVEIGAKVPRRLVYVVNRRTVVDQVTEEAEKIGERLPDVP 93 (844)
T ss_pred CCCCHHHHHHHHHHHcCCCcceEecCCCCcccHHHHHhhccccccccccceEEEeCchHHHHHHHHHHHHHHHHHhcccc
Confidence 346777888888887776 6888899999999543333322111 112 345667799999888 4444555544
Q ss_pred -------------------CCeeeeEEeeeee-ccccCCCCCceEEEechHHHHHHHhcC-------------CCCCCCc
Q 006122 120 -------------------GVKVGEEVGYTIR-FEDFTNKDLTAIKFLTDGVLLREMMDD-------------PLLTKYS 166 (660)
Q Consensus 120 -------------------~~~~~~~vg~~~~-~~~~~~~~~~~I~v~T~~~ll~~l~~~-------------~~l~~~~ 166 (660)
++++....|.... .+....+..++|+|+|++.+.+..... ..+.+++
T Consensus 94 ~~~~~~~~~~~~~~~~~~~~l~v~~l~GG~~~~~q~~~l~~~p~IIVgT~D~i~sr~L~~gYg~~~~~~pi~ag~L~~v~ 173 (844)
T TIGR02621 94 EVEAALWALCSTRPEKKDRPLAISTLRGQFADNDEWMLDPHRPAVIVGTVDMIGSRLLFSGYGCGFKSRPLHAGFLGQDA 173 (844)
T ss_pred hhhhhhhhhhccccccccCCeEEEEEECCCChHHHHHhcCCCCcEEEECHHHHcCCccccccccccccccchhhhhccce
Confidence 2455666664221 222223336899999976665443310 1268899
Q ss_pred EEEEeCCCcCCcChhHHHHHHHHHHHhcC---CceEEEeecccch--HHHHHHhhcCCCCCCCcccccCCCCCCeEEEEC
Q 006122 167 VIMVDEAHERSISTDILLGLLKKIQRCRS---DLRLIISSATIEA--KSMSAFFHARKGRRGLEGVELVPRLEPAILSVE 241 (660)
Q Consensus 167 ~iIiDE~Her~~~~d~ll~~l~~~~~~~~---~~kii~~SAT~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 241 (660)
+||+||||......+.+..+++.+. ..+ +.|+++||||++. ..+...+...+. .+.+.
T Consensus 174 ~LVLDEADLd~gF~~~l~~Il~~l~-rp~~~rprQtLLFSAT~p~ei~~l~~~~~~~p~----------------~i~V~ 236 (844)
T TIGR02621 174 LIVHDEAHLEPAFQELLKQIMNEQQ-RPPDFLPLRVVELTATSRTDGPDRTTLLSAEDY----------------KHPVL 236 (844)
T ss_pred EEEEehhhhccccHHHHHHHHHhcc-cCcccccceEEEEecCCCccHHHHHHHHccCCc----------------eeecc
Confidence 9999999943333333333333221 122 3699999999953 344444433321 11111
Q ss_pred Cccc---cceEEecCCCchhHHHHHHHHHHHHHhcCCCCcEEEEcCCHHHHHHHHHHHHHHhhhccCCCCCeEEEEccCC
Q 006122 242 GRGF---NVQIHYVEEPVSDYVQAAVSTVLLIHDKEPPGDILVFLTGQDDIDATIQLLTEEARTSKKNSSGLIILPLYSG 318 (660)
Q Consensus 242 ~~~~---~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iLVF~~~~~~i~~l~~~L~~~~~~~~~~~~~~~v~~lh~~ 318 (660)
.... .+.. +............+..+..+. ...++++||||||+++++.+++.|.+. ++ ..+||+
T Consensus 237 ~~~l~a~ki~q-~v~v~~e~Kl~~lv~~L~~ll-~e~g~~vLVF~NTv~~Aq~L~~~L~~~---------g~--~lLHG~ 303 (844)
T TIGR02621 237 KKRLAAKKIVK-LVPPSDEKFLSTMVKELNLLM-KDSGGAILVFCRTVKHVRKVFAKLPKE---------KF--ELLTGT 303 (844)
T ss_pred cccccccceEE-EEecChHHHHHHHHHHHHHHH-hhCCCcEEEEECCHHHHHHHHHHHHhc---------CC--eEeeCC
Confidence 1110 1111 222222222222333333333 245678999999999999999999764 33 899999
Q ss_pred CCHHHHh-----hhcCCCCC----CC-------cEEEEeCCCcccccCCCCeEEEEeCCCccceeecCCCCcccceeeec
Q 006122 319 LSRAEQE-----QVFSPTPR----GK-------RKVVISTNIAETSLTLEGIVYVVDSGFSKQRFYNPISDIENLVVAPI 382 (660)
Q Consensus 319 l~~~~r~-----~v~~~f~~----g~-------~~vlvaT~i~e~Gidip~v~~VId~g~~k~~~~~~~~~~~~l~~~~~ 382 (660)
|++.+|. ++++.|++ |. .+|||||+++|+||||+. ++||+. ..
T Consensus 304 m~q~dR~~~~~~~il~~Fk~~~~~g~~~~~~~g~~ILVATdVaerGLDId~-d~VI~d--------------------~a 362 (844)
T TIGR02621 304 LRGAERDDLVKKEIFNRFLPQMLSGSRARPQQGTVYLVCTSAGEVGVNISA-DHLVCD--------------------LA 362 (844)
T ss_pred CCHHHHhhHHHHHHHHHHhccccccccccccccceEEeccchhhhcccCCc-ceEEEC--------------------CC
Confidence 9999999 77888876 43 689999999999999997 677752 12
Q ss_pred CHHhHHHhhcccCCC-CC-cEEEEccChHHhhhhCCCCCCCccccccchhHHHHHHHcC
Q 006122 383 SKASARQRAGRAGRV-RP-GKCYRLYTEEYFVKEIPAEGIPEMQRSNLVSCVIQLKALG 439 (660)
Q Consensus 383 s~~~~~QR~GRaGR~-~~-G~~~~l~~~~~~~~~~~~~~~pei~~~~l~~~~l~l~~~~ 439 (660)
+..+|+||+||+||. +. |..+.+++.+.....-.....|+++...+..+.+.....|
T Consensus 363 P~esyIQRiGRtgR~G~~~~~~i~vv~~~~~~~~~~~vY~~~~l~~t~~~L~~~~~~~~ 421 (844)
T TIGR02621 363 PFESMQQRFGRVNRFGELQACQIAVVHLDLGKDQDFDVYGKKIDKSTWSTLKKLQQLKG 421 (844)
T ss_pred CHHHHHHHhcccCCCCCCCCceEEEEeeccCCCcccCCCCHHHHHHHHHHHHHHHhccc
Confidence 357999999999998 32 3334444332111101111235676665554444444444
No 58
>COG0514 RecQ Superfamily II DNA helicase [DNA replication, recombination, and repair]
Probab=99.98 E-value=1.7e-31 Score=285.50 Aligned_cols=308 Identities=19% Similarity=0.187 Sum_probs=221.1
Q ss_pred HHHHHHHHHhcCCEEEEEcCCCCcHH--HHHHHHHHhccccCCCeEEEEeCchHHHHHHHHHHHHHHhCCeeeeEEeeee
Q 006122 54 YRTAILYLVETHATTIIVGETGSGKT--TQIPQYLKEAGWADGGRVIACTQPRRLAVQAVASRVAEEMGVKVGEEVGYTI 131 (660)
Q Consensus 54 ~~~~i~~~l~~~~~vii~apTGsGKT--~~ip~~l~~~~~~~~~~~i~v~p~r~la~~~~~~~~~~~~~~~~~~~vg~~~ 131 (660)
-|.++++++.+++++++..|||+||| +|||.++. .+..|+|+|...|...++.. .+..|+.....-....
T Consensus 21 gQ~evI~~~l~g~d~lvvmPTGgGKSlCyQiPAll~------~G~TLVVSPLiSLM~DQV~~--l~~~Gi~A~~lnS~l~ 92 (590)
T COG0514 21 GQQEIIDALLSGKDTLVVMPTGGGKSLCYQIPALLL------EGLTLVVSPLISLMKDQVDQ--LEAAGIRAAYLNSTLS 92 (590)
T ss_pred CHHHHHHHHHcCCcEEEEccCCCCcchHhhhHHHhc------CCCEEEECchHHHHHHHHHH--HHHcCceeehhhcccC
Confidence 47799999999999999999999999 99998876 23579999999999988887 4445554433222211
Q ss_pred eccc-----cCCCCCceEEEechHHHHHHHhcCCC-CCCCcEEEEeCCCcCCcCh-hHHHHH--HHHHHHhcCCceEEEe
Q 006122 132 RFED-----FTNKDLTAIKFLTDGVLLREMMDDPL-LTKYSVIMVDEAHERSIST-DILLGL--LKKIQRCRSDLRLIIS 202 (660)
Q Consensus 132 ~~~~-----~~~~~~~~I~v~T~~~ll~~l~~~~~-l~~~~~iIiDE~Her~~~~-d~ll~~--l~~~~~~~~~~kii~~ 202 (660)
..+. ....+..+++|.+|++|...-..+.+ -..+++++|||||+.+-+. ||-..+ +..+....+++.++++
T Consensus 93 ~~e~~~v~~~l~~g~~klLyisPErl~~~~f~~~L~~~~i~l~vIDEAHCiSqWGhdFRP~Y~~lg~l~~~~~~~p~~Al 172 (590)
T COG0514 93 REERQQVLNQLKSGQLKLLYISPERLMSPRFLELLKRLPISLVAIDEAHCISQWGHDFRPDYRRLGRLRAGLPNPPVLAL 172 (590)
T ss_pred HHHHHHHHHHHhcCceeEEEECchhhcChHHHHHHHhCCCceEEechHHHHhhcCCccCHhHHHHHHHHhhCCCCCEEEE
Confidence 1111 11122579999999998654221111 5578999999999766443 454443 4445566678999999
Q ss_pred ecccchHHHHHHhhcCCCCCCCcccccCCCCCCeEEEECCccccceEEecCCCchhHHHHHHHHHHHHHhcCCCCcEEEE
Q 006122 203 SATIEAKSMSAFFHARKGRRGLEGVELVPRLEPAILSVEGRGFNVQIHYVEEPVSDYVQAAVSTVLLIHDKEPPGDILVF 282 (660)
Q Consensus 203 SAT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iLVF 282 (660)
|||.+.....+........ .+.++.. +-.. ..++|.-....+...+.. .+.. ......+..|||
T Consensus 173 TATA~~~v~~DI~~~L~l~------------~~~~~~~-sfdR-pNi~~~v~~~~~~~~q~~-fi~~-~~~~~~~~GIIY 236 (590)
T COG0514 173 TATATPRVRDDIREQLGLQ------------DANIFRG-SFDR-PNLALKVVEKGEPSDQLA-FLAT-VLPQLSKSGIIY 236 (590)
T ss_pred eCCCChHHHHHHHHHhcCC------------CcceEEe-cCCC-chhhhhhhhcccHHHHHH-HHHh-hccccCCCeEEE
Confidence 9999776555443332110 0001111 1111 111222111111111111 2221 224556778999
Q ss_pred cCCHHHHHHHHHHHHHHhhhccCCCCCeEEEEccCCCCHHHHhhhcCCCCCCCcEEEEeCCCcccccCCCCeEEEEeCCC
Q 006122 283 LTGQDDIDATIQLLTEEARTSKKNSSGLIILPLYSGLSRAEQEQVFSPTPRGKRKVVISTNIAETSLTLEGIVYVVDSGF 362 (660)
Q Consensus 283 ~~~~~~i~~l~~~L~~~~~~~~~~~~~~~v~~lh~~l~~~~r~~v~~~f~~g~~~vlvaT~i~e~Gidip~v~~VId~g~ 362 (660)
|.|++.++.+++.|.+. ++.+.+|||||+.++|..+.+.|.+++.+|+|||+.+++|||.|||++||++++
T Consensus 237 c~sRk~~E~ia~~L~~~---------g~~a~~YHaGl~~~eR~~~q~~f~~~~~~iiVAT~AFGMGIdKpdVRfViH~~l 307 (590)
T COG0514 237 CLTRKKVEELAEWLRKN---------GISAGAYHAGLSNEERERVQQAFLNDEIKVMVATNAFGMGIDKPDVRFVIHYDL 307 (590)
T ss_pred EeeHHhHHHHHHHHHHC---------CCceEEecCCCCHHHHHHHHHHHhcCCCcEEEEeccccCccCCCCceEEEEecC
Confidence 99999999999999886 899999999999999999999999999999999999999999999999999888
Q ss_pred ccceeecCCCCcccceeeecCHHhHHHhhcccCCC-CCcEEEEccChHHhh
Q 006122 363 SKQRFYNPISDIENLVVAPISKASARQRAGRAGRV-RPGKCYRLYTEEYFV 412 (660)
Q Consensus 363 ~k~~~~~~~~~~~~l~~~~~s~~~~~QR~GRaGR~-~~G~~~~l~~~~~~~ 412 (660)
|.|.++|.|-+|||||. .+..|+.||++.+..
T Consensus 308 ------------------P~s~EsYyQE~GRAGRDG~~a~aill~~~~D~~ 340 (590)
T COG0514 308 ------------------PGSIESYYQETGRAGRDGLPAEAILLYSPEDIR 340 (590)
T ss_pred ------------------CCCHHHHHHHHhhccCCCCcceEEEeeccccHH
Confidence 99999999999999999 899999999977644
No 59
>PRK10917 ATP-dependent DNA helicase RecG; Provisional
Probab=99.98 E-value=1.3e-30 Score=295.20 Aligned_cols=306 Identities=15% Similarity=0.179 Sum_probs=206.4
Q ss_pred cCCCcHHHHHHHHHHHhcC------CEEEEEcCCCCcHHHHHHHHHHhccccCCCeEEEEeCchHHHHHHH--HHHHHHH
Q 006122 47 QRLPVYKYRTAILYLVETH------ATTIIVGETGSGKTTQIPQYLKEAGWADGGRVIACTQPRRLAVQAV--ASRVAEE 118 (660)
Q Consensus 47 ~~lPi~~~~~~i~~~l~~~------~~vii~apTGsGKT~~ip~~l~~~~~~~~~~~i~v~p~r~la~~~~--~~~~~~~ 118 (660)
..+.+...|++++..+..+ .+++++||||||||......++.. ...+.++++++|++.|+.|.. .+.+...
T Consensus 258 l~f~lt~~Q~~ai~~I~~d~~~~~~~~~Ll~~~TGSGKT~va~~~il~~-~~~g~q~lilaPT~~LA~Q~~~~l~~l~~~ 336 (681)
T PRK10917 258 LPFELTGAQKRVVAEILADLASPKPMNRLLQGDVGSGKTVVAALAALAA-IEAGYQAALMAPTEILAEQHYENLKKLLEP 336 (681)
T ss_pred CCCCCCHHHHHHHHHHHHhhhccCCceEEEECCCCCcHHHHHHHHHHHH-HHcCCeEEEEeccHHHHHHHHHHHHHHHhh
Confidence 3444777788888777665 379999999999993332222222 224667899999999988843 3344555
Q ss_pred hCCeeeeEEeeeeeccc-----cCCCCCceEEEechHHHHHHHhcCCCCCCCcEEEEeCCCcCCcChhHHHHHHHHHHHh
Q 006122 119 MGVKVGEEVGYTIRFED-----FTNKDLTAIKFLTDGVLLREMMDDPLLTKYSVIMVDEAHERSISTDILLGLLKKIQRC 193 (660)
Q Consensus 119 ~~~~~~~~vg~~~~~~~-----~~~~~~~~I~v~T~~~ll~~l~~~~~l~~~~~iIiDE~Her~~~~d~ll~~l~~~~~~ 193 (660)
.+.+++..+|.....+. ....+..+|+|+||+.+.. ...+.++++|||||+|..+.. ....+...
T Consensus 337 ~~i~v~ll~G~~~~~~r~~~~~~l~~g~~~IvVgT~~ll~~----~v~~~~l~lvVIDE~Hrfg~~------qr~~l~~~ 406 (681)
T PRK10917 337 LGIRVALLTGSLKGKERREILEAIASGEADIVIGTHALIQD----DVEFHNLGLVIIDEQHRFGVE------QRLALREK 406 (681)
T ss_pred cCcEEEEEcCCCCHHHHHHHHHHHhCCCCCEEEchHHHhcc----cchhcccceEEEechhhhhHH------HHHHHHhc
Confidence 67888888885432111 1112268999999987642 234789999999999953321 12223333
Q ss_pred cCCceEEEeecccchHHHHHH-hhcCCCCCCCcccccCCCCCCeEE-EECCccccceEEecCCCchhHHHHHHHHHHHHH
Q 006122 194 RSDLRLIISSATIEAKSMSAF-FHARKGRRGLEGVELVPRLEPAIL-SVEGRGFNVQIHYVEEPVSDYVQAAVSTVLLIH 271 (660)
Q Consensus 194 ~~~~kii~~SAT~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~ 271 (660)
....++++||||+.+..++.. ++... ...+ ..+....|+...+......+ ..+..+....
T Consensus 407 ~~~~~iL~~SATp~prtl~~~~~g~~~---------------~s~i~~~p~~r~~i~~~~~~~~~~~---~~~~~i~~~~ 468 (681)
T PRK10917 407 GENPHVLVMTATPIPRTLAMTAYGDLD---------------VSVIDELPPGRKPITTVVIPDSRRD---EVYERIREEI 468 (681)
T ss_pred CCCCCEEEEeCCCCHHHHHHHHcCCCc---------------eEEEecCCCCCCCcEEEEeCcccHH---HHHHHHHHHH
Confidence 446889999999966655432 22211 0011 11222335555554433222 2233333322
Q ss_pred hcCCCCcEEEEcCCHH--------HHHHHHHHHHHHhhhccCCCCCeEEEEccCCCCHHHHhhhcCCCCCCCcEEEEeCC
Q 006122 272 DKEPPGDILVFLTGQD--------DIDATIQLLTEEARTSKKNSSGLIILPLYSGLSRAEQEQVFSPTPRGKRKVVISTN 343 (660)
Q Consensus 272 ~~~~~~~iLVF~~~~~--------~i~~l~~~L~~~~~~~~~~~~~~~v~~lh~~l~~~~r~~v~~~f~~g~~~vlvaT~ 343 (660)
..+++++||||..+ .++.+++.|.+.+ +++.+..+||+|++++|.++++.|++|+.+|||||+
T Consensus 469 --~~g~q~~v~~~~ie~s~~l~~~~~~~~~~~L~~~~-------~~~~v~~lHG~m~~~eR~~i~~~F~~g~~~ILVaT~ 539 (681)
T PRK10917 469 --AKGRQAYVVCPLIEESEKLDLQSAEETYEELQEAF-------PELRVGLLHGRMKPAEKDAVMAAFKAGEIDILVATT 539 (681)
T ss_pred --HcCCcEEEEEcccccccchhHHHHHHHHHHHHHHC-------CCCcEEEEeCCCCHHHHHHHHHHHHcCCCCEEEECc
Confidence 35678999999654 4455666666542 247899999999999999999999999999999999
Q ss_pred CcccccCCCCeEEEEeCCCccceeecCCCCcccceeeecCHHhHHHhhcccCCC-CCcEEEEccC
Q 006122 344 IAETSLTLEGIVYVVDSGFSKQRFYNPISDIENLVVAPISKASARQRAGRAGRV-RPGKCYRLYT 407 (660)
Q Consensus 344 i~e~Gidip~v~~VId~g~~k~~~~~~~~~~~~l~~~~~s~~~~~QR~GRaGR~-~~G~~~~l~~ 407 (660)
++++|||+|++++||..+. .. .+.+++.||+||+||. .+|.||.+++
T Consensus 540 vie~GiDip~v~~VIi~~~--------~r---------~gls~lhQ~~GRvGR~g~~g~~ill~~ 587 (681)
T PRK10917 540 VIEVGVDVPNATVMVIENA--------ER---------FGLAQLHQLRGRVGRGAAQSYCVLLYK 587 (681)
T ss_pred ceeeCcccCCCcEEEEeCC--------CC---------CCHHHHHHHhhcccCCCCceEEEEEEC
Confidence 9999999999999998443 21 2356788999999999 7899999985
No 60
>KOG0350 consensus DEAD-box ATP-dependent RNA helicase [RNA processing and modification]
Probab=99.98 E-value=1.4e-31 Score=270.67 Aligned_cols=319 Identities=18% Similarity=0.208 Sum_probs=216.0
Q ss_pred CcHHHHHHHHHHH----h-----cCCEEEEEcCCCCcHH--HHHHHHHHhccc-cCCCeEEEEeCchHHHHH--HHHHHH
Q 006122 50 PVYKYRTAILYLV----E-----THATTIIVGETGSGKT--TQIPQYLKEAGW-ADGGRVIACTQPRRLAVQ--AVASRV 115 (660)
Q Consensus 50 Pi~~~~~~i~~~l----~-----~~~~vii~apTGsGKT--~~ip~~l~~~~~-~~~~~~i~v~p~r~la~~--~~~~~~ 115 (660)
-.++.|..++..+ + ..+++.|.|||||||| |.||..-.-... -+.-++|+++|+|.|+.| .+.+++
T Consensus 159 ~~FPVQ~aVlp~ll~~~~~p~~~r~rDIcV~ApTGSGKTLaY~iPIVQ~L~~R~v~~LRavVivPtr~L~~QV~~~f~~~ 238 (620)
T KOG0350|consen 159 RLFPVQYAVLPSLLEEIRSPPPSRPRDICVNAPTGSGKTLAYVIPIVQLLSSRPVKRLRAVVIVPTRELALQVYDTFKRL 238 (620)
T ss_pred cccchHHHHHHHHHHhhcCCCCCCCCceEEecCCCCCceeeehhHHHHHHccCCccceEEEEEeeHHHHHHHHHHHHHHh
Confidence 3455565565555 3 2467999999999999 888865433321 123568999999999998 344455
Q ss_pred HHHhCCeeeeEEeee-eecccc-----CCCCCceEEEechHHHHHHHhcCC-C-CCCCcEEEEeCCCcCCcChhHHHHHH
Q 006122 116 AEEMGVKVGEEVGYT-IRFEDF-----TNKDLTAIKFLTDGVLLREMMDDP-L-LTKYSVIMVDEAHERSISTDILLGLL 187 (660)
Q Consensus 116 ~~~~~~~~~~~vg~~-~~~~~~-----~~~~~~~I~v~T~~~ll~~l~~~~-~-l~~~~~iIiDE~Her~~~~d~ll~~l 187 (660)
....|..++...|.. .+.+.. ......+|+|+|||+|.+++.+.+ + |.++.++|||||+ |.++..+..++-
T Consensus 239 ~~~tgL~V~~~sgq~sl~~E~~qL~~~~~~~~~DIlVaTPGRLVDHl~~~k~f~Lk~LrfLVIDEAD-Rll~qsfQ~Wl~ 317 (620)
T KOG0350|consen 239 NSGTGLAVCSLSGQNSLEDEARQLASDPPECRIDILVATPGRLVDHLNNTKSFDLKHLRFLVIDEAD-RLLDQSFQEWLD 317 (620)
T ss_pred ccCCceEEEecccccchHHHHHHHhcCCCccccceEEcCchHHHHhccCCCCcchhhceEEEechHH-HHHHHHHHHHHH
Confidence 556666666666622 111111 111245999999999999998644 3 9999999999999 665554332221
Q ss_pred HHH---------------H-------------------HhcCCceEEEeeccc--chHHHHHHhhcCCCCCCCcccccCC
Q 006122 188 KKI---------------Q-------------------RCRSDLRLIISSATI--EAKSMSAFFHARKGRRGLEGVELVP 231 (660)
Q Consensus 188 ~~~---------------~-------------------~~~~~~kii~~SAT~--~~~~~~~~~~~~~~~~~~~~~~~~~ 231 (660)
.-+ . +..+.+..+.+|||+ ++..+.++--..|
T Consensus 318 ~v~~~~~~~k~~~~~~nii~~~~~~~pt~~~e~~t~~~~~~~~l~kL~~satLsqdP~Kl~~l~l~~P------------ 385 (620)
T KOG0350|consen 318 TVMSLCKTMKRVACLDNIIRQRQAPQPTVLSELLTKLGKLYPPLWKLVFSATLSQDPSKLKDLTLHIP------------ 385 (620)
T ss_pred HHHHHhCCchhhcChhhhhhhcccCCchhhHHHHhhcCCcCchhHhhhcchhhhcChHHHhhhhcCCC------------
Confidence 111 1 112344567788887 7777776543332
Q ss_pred CCCCeEEEECCc---cccce----EEecCCCchhHHHHHHHHHHHHHhcCCCCcEEEEcCCHHHHHHHHHHHHHHhhhcc
Q 006122 232 RLEPAILSVEGR---GFNVQ----IHYVEEPVSDYVQAAVSTVLLIHDKEPPGDILVFLTGQDDIDATIQLLTEEARTSK 304 (660)
Q Consensus 232 ~~~~~~~~~~~~---~~~v~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iLVF~~~~~~i~~l~~~L~~~~~~~~ 304 (660)
..+.+.+. .|.+. ..+..... ......+..........++|+|+++.+.+.+++..|.-.+
T Consensus 386 ----rl~~v~~~~~~ryslp~~l~~~~vv~~~----~~kpl~~~~lI~~~k~~r~lcf~~S~~sa~Rl~~~L~v~~---- 453 (620)
T KOG0350|consen 386 ----RLFHVSKPLIGRYSLPSSLSHRLVVTEP----KFKPLAVYALITSNKLNRTLCFVNSVSSANRLAHVLKVEF---- 453 (620)
T ss_pred ----ceEEeecccceeeecChhhhhceeeccc----ccchHhHHHHHHHhhcceEEEEecchHHHHHHHHHHHHHh----
Confidence 12333221 11110 00000000 0001122233344566779999999999999999997332
Q ss_pred CCCCCeEEEEccCCCCHHHHhhhcCCCCCCCcEEEEeCCCcccccCCCCeEEEEeCCCccceeecCCCCcccceeeecCH
Q 006122 305 KNSSGLIILPLYSGLSRAEQEQVFSPTPRGKRKVVISTNIAETSLTLEGIVYVVDSGFSKQRFYNPISDIENLVVAPISK 384 (660)
Q Consensus 305 ~~~~~~~v~~lh~~l~~~~r~~v~~~f~~g~~~vlvaT~i~e~Gidip~v~~VId~g~~k~~~~~~~~~~~~l~~~~~s~ 384 (660)
......+-.+.|+++...|.+.++.|..|.++|+||++++++|+|+.+|+.||+++. |.+.
T Consensus 454 -~~~~~~~s~~t~~l~~k~r~k~l~~f~~g~i~vLIcSD~laRGiDv~~v~~VINYd~------------------P~~~ 514 (620)
T KOG0350|consen 454 -CSDNFKVSEFTGQLNGKRRYKMLEKFAKGDINVLICSDALARGIDVNDVDNVINYDP------------------PASD 514 (620)
T ss_pred -ccccchhhhhhhhhhHHHHHHHHHHHhcCCceEEEehhhhhcCCcccccceEeecCC------------------Cchh
Confidence 234666777999999999999999999999999999999999999999999999665 8888
Q ss_pred HhHHHhhcccCCC-CCcEEEEccChHHhh
Q 006122 385 ASARQRAGRAGRV-RPGKCYRLYTEEYFV 412 (660)
Q Consensus 385 ~~~~QR~GRaGR~-~~G~~~~l~~~~~~~ 412 (660)
.+|+||+||++|. +.|.||.|.+.+...
T Consensus 515 ktyVHR~GRTARAgq~G~a~tll~~~~~r 543 (620)
T KOG0350|consen 515 KTYVHRAGRTARAGQDGYAITLLDKHEKR 543 (620)
T ss_pred hHHHHhhcccccccCCceEEEeeccccch
Confidence 8999999999999 899999999876543
No 61
>TIGR00643 recG ATP-dependent DNA helicase RecG.
Probab=99.97 E-value=1.5e-30 Score=292.89 Aligned_cols=302 Identities=14% Similarity=0.154 Sum_probs=199.7
Q ss_pred cHHHHHHHHHHHhcC------CEEEEEcCCCCcHHHHHHHHHHhccccCCCeEEEEeCchHHHHHHH--HHHHHHHhCCe
Q 006122 51 VYKYRTAILYLVETH------ATTIIVGETGSGKTTQIPQYLKEAGWADGGRVIACTQPRRLAVQAV--ASRVAEEMGVK 122 (660)
Q Consensus 51 i~~~~~~i~~~l~~~------~~vii~apTGsGKT~~ip~~l~~~~~~~~~~~i~v~p~r~la~~~~--~~~~~~~~~~~ 122 (660)
+...|++++..+..+ .+.+++||||||||......++.. ...+.++++++|++.|+.|.. .+.+....+.+
T Consensus 236 lt~~Q~~ai~~I~~~~~~~~~~~~Ll~g~TGSGKT~va~l~il~~-~~~g~qvlilaPT~~LA~Q~~~~~~~l~~~~gi~ 314 (630)
T TIGR00643 236 LTRAQKRVVKEILQDLKSDVPMNRLLQGDVGSGKTLVAALAMLAA-IEAGYQVALMAPTEILAEQHYNSLRNLLAPLGIE 314 (630)
T ss_pred CCHHHHHHHHHHHHHhccCCCccEEEECCCCCcHHHHHHHHHHHH-HHcCCcEEEECCHHHHHHHHHHHHHHHhcccCcE
Confidence 566677777666543 258999999999994433222222 224567899999999988743 33344455788
Q ss_pred eeeEEeeeeecc------ccCCCCCceEEEechHHHHHHHhcCCCCCCCcEEEEeCCCcCCcChhHHHHHHHHHHHhc--
Q 006122 123 VGEEVGYTIRFE------DFTNKDLTAIKFLTDGVLLREMMDDPLLTKYSVIMVDEAHERSISTDILLGLLKKIQRCR-- 194 (660)
Q Consensus 123 ~~~~vg~~~~~~------~~~~~~~~~I~v~T~~~ll~~l~~~~~l~~~~~iIiDE~Her~~~~d~ll~~l~~~~~~~-- 194 (660)
++..+|.....+ ..... ..+|+|+|++.+.. +..+.++++|||||+|..+... . ..+....
T Consensus 315 v~lltg~~~~~~r~~~~~~i~~g-~~~IiVgT~~ll~~----~~~~~~l~lvVIDEaH~fg~~q--r----~~l~~~~~~ 383 (630)
T TIGR00643 315 VALLTGSLKGKRRKELLETIASG-QIHLVVGTHALIQE----KVEFKRLALVIIDEQHRFGVEQ--R----KKLREKGQG 383 (630)
T ss_pred EEEEecCCCHHHHHHHHHHHhCC-CCCEEEecHHHHhc----cccccccceEEEechhhccHHH--H----HHHHHhccc
Confidence 887777432211 11222 67999999987653 3347899999999999543321 1 1122222
Q ss_pred -CCceEEEeecccchHHHHHHh-hcCCCCCCCcccccCCCCCCeEEEECCccccceEEecCCCchhHHHHHHHHHHHHHh
Q 006122 195 -SDLRLIISSATIEAKSMSAFF-HARKGRRGLEGVELVPRLEPAILSVEGRGFNVQIHYVEEPVSDYVQAAVSTVLLIHD 272 (660)
Q Consensus 195 -~~~kii~~SAT~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~ 272 (660)
...++++||||+.+..++... +..... .+-..+....|+..++...... +.....+....
T Consensus 384 ~~~~~~l~~SATp~prtl~l~~~~~l~~~--------------~i~~~p~~r~~i~~~~~~~~~~---~~~~~~i~~~l- 445 (630)
T TIGR00643 384 GFTPHVLVMSATPIPRTLALTVYGDLDTS--------------IIDELPPGRKPITTVLIKHDEK---DIVYEFIEEEI- 445 (630)
T ss_pred CCCCCEEEEeCCCCcHHHHHHhcCCccee--------------eeccCCCCCCceEEEEeCcchH---HHHHHHHHHHH-
Confidence 267899999998665554322 211100 0111122223455544433222 22233222222
Q ss_pred cCCCCcEEEEcCCHH--------HHHHHHHHHHHHhhhccCCCCCeEEEEccCCCCHHHHhhhcCCCCCCCcEEEEeCCC
Q 006122 273 KEPPGDILVFLTGQD--------DIDATIQLLTEEARTSKKNSSGLIILPLYSGLSRAEQEQVFSPTPRGKRKVVISTNI 344 (660)
Q Consensus 273 ~~~~~~iLVF~~~~~--------~i~~l~~~L~~~~~~~~~~~~~~~v~~lh~~l~~~~r~~v~~~f~~g~~~vlvaT~i 344 (660)
..+++++|||+..+ .++.+++.|.+.+ ++..+..+||+|++++|..+++.|++|+.+|||||++
T Consensus 446 -~~g~q~~v~~~~i~~s~~~~~~~a~~~~~~L~~~~-------~~~~v~~lHG~m~~~eR~~i~~~F~~g~~~ILVaT~v 517 (630)
T TIGR00643 446 -AKGRQAYVVYPLIEESEKLDLKAAEALYERLKKAF-------PKYNVGLLHGRMKSDEKEAVMEEFREGEVDILVATTV 517 (630)
T ss_pred -HhCCcEEEEEccccccccchHHHHHHHHHHHHhhC-------CCCcEEEEeCCCCHHHHHHHHHHHHcCCCCEEEECce
Confidence 24577999999764 4556666665432 4788999999999999999999999999999999999
Q ss_pred cccccCCCCeEEEEeCCCccceeecCCCCcccceeeecCHHhHHHhhcccCCC-CCcEEEEccC
Q 006122 345 AETSLTLEGIVYVVDSGFSKQRFYNPISDIENLVVAPISKASARQRAGRAGRV-RPGKCYRLYT 407 (660)
Q Consensus 345 ~e~Gidip~v~~VId~g~~k~~~~~~~~~~~~l~~~~~s~~~~~QR~GRaGR~-~~G~~~~l~~ 407 (660)
+++|||+|++++||..+. . ..+.+++.||+||+||. .+|.||.++.
T Consensus 518 ie~GvDiP~v~~VIi~~~--------~---------r~gls~lhQ~~GRvGR~g~~g~~il~~~ 564 (630)
T TIGR00643 518 IEVGVDVPNATVMVIEDA--------E---------RFGLSQLHQLRGRVGRGDHQSYCLLVYK 564 (630)
T ss_pred eecCcccCCCcEEEEeCC--------C---------cCCHHHHHHHhhhcccCCCCcEEEEEEC
Confidence 999999999999997443 2 12467888999999998 7999999983
No 62
>KOG0346 consensus RNA helicase [RNA processing and modification]
Probab=99.97 E-value=4.7e-31 Score=262.93 Aligned_cols=335 Identities=20% Similarity=0.203 Sum_probs=250.2
Q ss_pred cCCCCCCCccchHhHHHHhcCCCcHHHHHHHHHHHhcCCEEEEEcCCCCcHH--HHHHHHH--Hhccc----cCCCeEEE
Q 006122 28 SLSSASSIGYGYASIEKQRQRLPVYKYRTAILYLVETHATTIIVGETGSGKT--TQIPQYL--KEAGW----ADGGRVIA 99 (660)
Q Consensus 28 ~~~~~~~~~~~~~~~~~~~~~lPi~~~~~~i~~~l~~~~~vii~apTGsGKT--~~ip~~l--~~~~~----~~~~~~i~ 99 (660)
+|.++.+-+...+++.+-...-|...++..|.-+++ +++++..|.|||||| |+||.+- +.... ..+...++
T Consensus 20 tFe~~gLD~RllkAi~~lG~ekpTlIQs~aIplaLE-gKDvvarArTGSGKT~AYliPllqkll~~k~t~~~e~~~sa~i 98 (569)
T KOG0346|consen 20 TFEEFGLDSRLLKAITKLGWEKPTLIQSSAIPLALE-GKDVVARARTGSGKTAAYLIPLLQKLLAEKKTNDGEQGPSAVI 98 (569)
T ss_pred cHHHhCCCHHHHHHHHHhCcCCcchhhhcccchhhc-CcceeeeeccCCCchHHHHHHHHHHHHHhhhcccccccceeEE
Confidence 589999999999999998899999988888877775 457999999999999 8888553 22211 12345799
Q ss_pred EeCchHHHHH--HHHHHHHHHhC--CeeeeEE---eeeeeccccCCCCCceEEEechHHHHHHHhcCCC--CCCCcEEEE
Q 006122 100 CTQPRRLAVQ--AVASRVAEEMG--VKVGEEV---GYTIRFEDFTNKDLTAIKFLTDGVLLREMMDDPL--LTKYSVIMV 170 (660)
Q Consensus 100 v~p~r~la~~--~~~~~~~~~~~--~~~~~~v---g~~~~~~~~~~~~~~~I~v~T~~~ll~~l~~~~~--l~~~~~iIi 170 (660)
++|+|+|+.| .+.+.+....+ +.+.... ...+. ...-.+.++|+|+||+.+++++..+.. +..++++|+
T Consensus 99 LvPTkEL~qQvy~viekL~~~c~k~lr~~nl~s~~sdsv~--~~~L~d~pdIvV~TP~~ll~~~~~~~~~~~~~l~~LVv 176 (569)
T KOG0346|consen 99 LVPTKELAQQVYKVIEKLVEYCSKDLRAINLASSMSDSVN--SVALMDLPDIVVATPAKLLRHLAAGVLEYLDSLSFLVV 176 (569)
T ss_pred EechHHHHHHHHHHHHHHHHHHHHhhhhhhhhcccchHHH--HHHHccCCCeEEeChHHHHHHHhhccchhhhheeeEEe
Confidence 9999999988 33333333322 1111111 11111 111223789999999999999988874 889999999
Q ss_pred eCCCcCCcChhHHHHHHHHHHHhcCCceEEEeeccc--chHHHHHHhhcCCCCCCCcccccCCCCCCeEEEECCcc----
Q 006122 171 DEAHERSISTDILLGLLKKIQRCRSDLRLIISSATI--EAKSMSAFFHARKGRRGLEGVELVPRLEPAILSVEGRG---- 244 (660)
Q Consensus 171 DE~Her~~~~d~ll~~l~~~~~~~~~~kii~~SAT~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---- 244 (660)
|||+ ..+..++-..+.+......+..|-++||||+ |...+...|...|+ ++.+....
T Consensus 177 DEAD-LllsfGYeedlk~l~~~LPr~~Q~~LmSATl~dDv~~LKkL~l~nPv----------------iLkl~e~el~~~ 239 (569)
T KOG0346|consen 177 DEAD-LLLSFGYEEDLKKLRSHLPRIYQCFLMSATLSDDVQALKKLFLHNPV----------------ILKLTEGELPNP 239 (569)
T ss_pred chhh-hhhhcccHHHHHHHHHhCCchhhheeehhhhhhHHHHHHHHhccCCe----------------EEEeccccCCCc
Confidence 9999 3444445455555555567788999999999 88889998887763 34443332
Q ss_pred ccceEEecCCCchhHHHHHHHHHHHHHhcCCCCcEEEEcCCHHHHHHHHHHHHHHhhhccCCCCCeEEEEccCCCCHHHH
Q 006122 245 FNVQIHYVEEPVSDYVQAAVSTVLLIHDKEPPGDILVFLTGQDDIDATIQLLTEEARTSKKNSSGLIILPLYSGLSRAEQ 324 (660)
Q Consensus 245 ~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iLVF~~~~~~i~~l~~~L~~~~~~~~~~~~~~~v~~lh~~l~~~~r 324 (660)
-.+..++......|..- .+-.++.+ .--.|++|||+|+.+.+.++.-.|.+. ++..+.+.|.||...|
T Consensus 240 dqL~Qy~v~cse~DKfl-llyallKL--~LI~gKsliFVNtIdr~YrLkLfLeqF---------GiksciLNseLP~NSR 307 (569)
T KOG0346|consen 240 DQLTQYQVKCSEEDKFL-LLYALLKL--RLIRGKSLIFVNTIDRCYRLKLFLEQF---------GIKSCILNSELPANSR 307 (569)
T ss_pred ccceEEEEEeccchhHH-HHHHHHHH--HHhcCceEEEEechhhhHHHHHHHHHh---------CcHhhhhcccccccch
Confidence 23455666555444221 12222222 234688999999999999998888776 8899999999999999
Q ss_pred hhhcCCCCCCCcEEEEeCCC-----------------------------------cccccCCCCeEEEEeCCCccceeec
Q 006122 325 EQVFSPTPRGKRKVVISTNI-----------------------------------AETSLTLEGIVYVVDSGFSKQRFYN 369 (660)
Q Consensus 325 ~~v~~~f~~g~~~vlvaT~i-----------------------------------~e~Gidip~v~~VId~g~~k~~~~~ 369 (660)
..+++.|..|..+||+||+. .++|||+.+|..|||+++
T Consensus 308 ~Hii~QFNkG~YdivIAtD~s~~~~~~eee~kgk~~e~~~kndkkskkK~D~E~GVsRGIDF~~V~~VlNFD~------- 380 (569)
T KOG0346|consen 308 CHIIEQFNKGLYDIVIATDDSADGDKLEEEVKGKSDEKNPKNDKKSKKKLDKESGVSRGIDFHHVSNVLNFDF------- 380 (569)
T ss_pred hhHHHHhhCcceeEEEEccCccchhhhhccccccccccCCCCccccccccCchhchhccccchheeeeeecCC-------
Confidence 99999999999999999992 258999999999999998
Q ss_pred CCCCcccceeeecCHHhHHHhhcccCCC-CCcEEEEccChHHhh
Q 006122 370 PISDIENLVVAPISKASARQRAGRAGRV-RPGKCYRLYTEEYFV 412 (660)
Q Consensus 370 ~~~~~~~l~~~~~s~~~~~QR~GRaGR~-~~G~~~~l~~~~~~~ 412 (660)
|.+..+|+||+||++|. .+|.+..++.+....
T Consensus 381 -----------P~t~~sYIHRvGRTaRg~n~GtalSfv~P~e~~ 413 (569)
T KOG0346|consen 381 -----------PETVTSYIHRVGRTARGNNKGTALSFVSPKEEF 413 (569)
T ss_pred -----------CCchHHHHHhccccccCCCCCceEEEecchHHh
Confidence 89999999999999999 999999998876543
No 63
>PRK10689 transcription-repair coupling factor; Provisional
Probab=99.97 E-value=1.3e-30 Score=304.94 Aligned_cols=304 Identities=16% Similarity=0.154 Sum_probs=199.6
Q ss_pred CcHHHHHHHHHHHhcC------CEEEEEcCCCCcHHHHHHHHHHhccccCCCeEEEEeCchHHHHHHHHHHH--HHHhCC
Q 006122 50 PVYKYRTAILYLVETH------ATTIIVGETGSGKTTQIPQYLKEAGWADGGRVIACTQPRRLAVQAVASRV--AEEMGV 121 (660)
Q Consensus 50 Pi~~~~~~i~~~l~~~------~~vii~apTGsGKT~~ip~~l~~~~~~~~~~~i~v~p~r~la~~~~~~~~--~~~~~~ 121 (660)
.....|.+++..+..+ .+++++|+||+|||.++-..+... ...+.++++++|++.|+.|.+.... ....+.
T Consensus 600 ~~T~~Q~~aI~~il~d~~~~~~~d~Ll~a~TGsGKT~val~aa~~~-~~~g~qvlvLvPT~eLA~Q~~~~f~~~~~~~~v 678 (1147)
T PRK10689 600 ETTPDQAQAINAVLSDMCQPLAMDRLVCGDVGFGKTEVAMRAAFLA-VENHKQVAVLVPTTLLAQQHYDNFRDRFANWPV 678 (1147)
T ss_pred CCCHHHHHHHHHHHHHhhcCCCCCEEEEcCCCcCHHHHHHHHHHHH-HHcCCeEEEEeCcHHHHHHHHHHHHHhhccCCc
Confidence 3455555566655554 679999999999994332222222 2346779999999999887543321 222345
Q ss_pred eeeeEEeeeeeccccC-----CCCCceEEEechHHHHHHHhcCCCCCCCcEEEEeCCCcCCcChhHHHHHHHHHHHhcCC
Q 006122 122 KVGEEVGYTIRFEDFT-----NKDLTAIKFLTDGVLLREMMDDPLLTKYSVIMVDEAHERSISTDILLGLLKKIQRCRSD 196 (660)
Q Consensus 122 ~~~~~vg~~~~~~~~~-----~~~~~~I~v~T~~~ll~~l~~~~~l~~~~~iIiDE~Her~~~~d~ll~~l~~~~~~~~~ 196 (660)
.+....|+....+... ..+..+|+|+||+.+. .+..+.++++|||||+|..+.. ....+....++
T Consensus 679 ~i~~l~g~~s~~e~~~il~~l~~g~~dIVVgTp~lL~----~~v~~~~L~lLVIDEahrfG~~------~~e~lk~l~~~ 748 (1147)
T PRK10689 679 RIEMLSRFRSAKEQTQILAEAAEGKIDILIGTHKLLQ----SDVKWKDLGLLIVDEEHRFGVR------HKERIKAMRAD 748 (1147)
T ss_pred eEEEEECCCCHHHHHHHHHHHHhCCCCEEEECHHHHh----CCCCHhhCCEEEEechhhcchh------HHHHHHhcCCC
Confidence 5555555332211111 1125799999997542 3334789999999999954321 22334445678
Q ss_pred ceEEEeecccchHHHHHHhhcCCCCCCCcccccCCCCCCeEEEECCc-cccceEEecCCCchhHHHHHHHHHHHHHhcCC
Q 006122 197 LRLIISSATIEAKSMSAFFHARKGRRGLEGVELVPRLEPAILSVEGR-GFNVQIHYVEEPVSDYVQAAVSTVLLIHDKEP 275 (660)
Q Consensus 197 ~kii~~SAT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 275 (660)
.++++||||+.+..+........ .+..+..+.. ..+++.+......... ...++... ..
T Consensus 749 ~qvLl~SATpiprtl~l~~~gl~--------------d~~~I~~~p~~r~~v~~~~~~~~~~~~----k~~il~el--~r 808 (1147)
T PRK10689 749 VDILTLTATPIPRTLNMAMSGMR--------------DLSIIATPPARRLAVKTFVREYDSLVV----REAILREI--LR 808 (1147)
T ss_pred CcEEEEcCCCCHHHHHHHHhhCC--------------CcEEEecCCCCCCCceEEEEecCcHHH----HHHHHHHH--hc
Confidence 99999999986654432221110 0113332221 2344443332211111 11111111 24
Q ss_pred CCcEEEEcCCHHHHHHHHHHHHHHhhhccCCCCCeEEEEccCCCCHHHHhhhcCCCCCCCcEEEEeCCCcccccCCCCeE
Q 006122 276 PGDILVFLTGQDDIDATIQLLTEEARTSKKNSSGLIILPLYSGLSRAEQEQVFSPTPRGKRKVVISTNIAETSLTLEGIV 355 (660)
Q Consensus 276 ~~~iLVF~~~~~~i~~l~~~L~~~~~~~~~~~~~~~v~~lh~~l~~~~r~~v~~~f~~g~~~vlvaT~i~e~Gidip~v~ 355 (660)
+++++||||+++.++.+++.|.+.. ++..+..+||+|++++|.++++.|++|+.+|||||+++++|||+|+++
T Consensus 809 ~gqv~vf~n~i~~ie~la~~L~~~~-------p~~~v~~lHG~m~q~eRe~im~~Fr~Gk~~VLVaTdIierGIDIP~v~ 881 (1147)
T PRK10689 809 GGQVYYLYNDVENIQKAAERLAELV-------PEARIAIGHGQMRERELERVMNDFHHQRFNVLVCTTIIETGIDIPTAN 881 (1147)
T ss_pred CCeEEEEECCHHHHHHHHHHHHHhC-------CCCcEEEEeCCCCHHHHHHHHHHHHhcCCCEEEECchhhcccccccCC
Confidence 6789999999999999999998763 357889999999999999999999999999999999999999999999
Q ss_pred EEEeCCCccceeecCCCCcccceeeecCHHhHHHhhcccCCC-CCcEEEEccCh
Q 006122 356 YVVDSGFSKQRFYNPISDIENLVVAPISKASARQRAGRAGRV-RPGKCYRLYTE 408 (660)
Q Consensus 356 ~VId~g~~k~~~~~~~~~~~~l~~~~~s~~~~~QR~GRaGR~-~~G~~~~l~~~ 408 (660)
+||.. ++. ..+.++|.||+||+||. +.|.||.+++.
T Consensus 882 ~VIi~--------~ad---------~fglaq~~Qr~GRvGR~g~~g~a~ll~~~ 918 (1147)
T PRK10689 882 TIIIE--------RAD---------HFGLAQLHQLRGRVGRSHHQAYAWLLTPH 918 (1147)
T ss_pred EEEEe--------cCC---------CCCHHHHHHHhhccCCCCCceEEEEEeCC
Confidence 99931 111 12345689999999999 89999998864
No 64
>KOG0354 consensus DEAD-box like helicase [General function prediction only]
Probab=99.97 E-value=1.9e-30 Score=280.17 Aligned_cols=337 Identities=18% Similarity=0.235 Sum_probs=216.3
Q ss_pred cCCCcHHHHHHHHHHHhcCCEEEEEcCCCCcHHHHHHHHHHhc-cccCCCeEEEEeCchHHHHHHHHHHHHHHhCCe---
Q 006122 47 QRLPVYKYRTAILYLVETHATTIIVGETGSGKTTQIPQYLKEA-GWADGGRVIACTQPRRLAVQAVASRVAEEMGVK--- 122 (660)
Q Consensus 47 ~~lPi~~~~~~i~~~l~~~~~vii~apTGsGKT~~ip~~l~~~-~~~~~~~~i~v~p~r~la~~~~~~~~~~~~~~~--- 122 (660)
..+|+..+|.+|..... ++++||++|||+|||+++...+++. .+.+++++|+.+|++-|..|+. ..+.. ++..
T Consensus 59 ~~~~lR~YQ~eivq~AL-gkNtii~lPTG~GKTfIAa~Vm~nh~rw~p~~KiVF~aP~~pLv~QQ~-a~~~~-~~~~~~~ 135 (746)
T KOG0354|consen 59 TNLELRNYQEELVQPAL-GKNTIIALPTGSGKTFIAAVIMKNHFEWRPKGKVVFLAPTRPLVNQQI-ACFSI-YLIPYSV 135 (746)
T ss_pred CcccccHHHHHHhHHhh-cCCeEEEeecCCCccchHHHHHHHHHhcCCcceEEEeeCCchHHHHHH-HHHhh-ccCcccc
Confidence 56889999999998887 9999999999999997776665543 4556789999999999999988 33333 2221
Q ss_pred eeeEEeeeeeccccCCCCCceEEEechHHHHHHHhcCCC--CCCCcEEEEeCCCcCCcChhHHHHHHHHHHH-hcCCceE
Q 006122 123 VGEEVGYTIRFEDFTNKDLTAIKFLTDGVLLREMMDDPL--LTKYSVIMVDEAHERSISTDILLGLLKKIQR-CRSDLRL 199 (660)
Q Consensus 123 ~~~~vg~~~~~~~~~~~~~~~I~v~T~~~ll~~l~~~~~--l~~~~~iIiDE~Her~~~~d~ll~~l~~~~~-~~~~~ki 199 (660)
.+...|...+......-...+|.|+||+.+.+-|.+... |+.++++|+|||| |.........+.+.++. .....|+
T Consensus 136 T~~l~~~~~~~~r~~i~~s~~vff~TpQil~ndL~~~~~~~ls~fs~iv~DE~H-ra~kn~~Y~~Vmr~~l~~k~~~~qI 214 (746)
T KOG0354|consen 136 TGQLGDTVPRSNRGEIVASKRVFFRTPQILENDLKSGLHDELSDFSLIVFDECH-RTSKNHPYNNIMREYLDLKNQGNQI 214 (746)
T ss_pred eeeccCccCCCchhhhhcccceEEeChHhhhhhcccccccccceEEEEEEcccc-cccccccHHHHHHHHHHhhhccccE
Confidence 112112111111111112689999999999998865432 7899999999999 55444344444544443 3344499
Q ss_pred EEeeccc--chHHHHHHhhcCCCCCCCccccc----------CCCCCCe-------------------------------
Q 006122 200 IISSATI--EAKSMSAFFHARKGRRGLEGVEL----------VPRLEPA------------------------------- 236 (660)
Q Consensus 200 i~~SAT~--~~~~~~~~~~~~~~~~~~~~~~~----------~~~~~~~------------------------------- 236 (660)
+++|||+ +.+..+++..+....-..+.... ...++..
T Consensus 215 LgLTASpG~~~~~v~~~I~~L~asldvr~~ssi~~~y~~lr~~~~i~v~~~~~~~~~~~~f~~~i~p~l~~l~~~~l~~~ 294 (746)
T KOG0354|consen 215 LGLTASPGSKLEQVQNVIDNLCASLDVRTESSIKSNYEELREHVQIPVDLSLCERDIEDPFGMIIEPLLQQLQEEGLIEI 294 (746)
T ss_pred EEEecCCCccHHHHHHHHHhhheecccchhhhhhhhHHHHhccCcccCcHHHhhhhhhhhHHHHHHHHHHHHHhcCcccc
Confidence 9999999 66666666554322111110000 0000000
Q ss_pred ----------EEEECCc---cccceEE---ec------------------------------CCCc--------------
Q 006122 237 ----------ILSVEGR---GFNVQIH---YV------------------------------EEPV-------------- 256 (660)
Q Consensus 237 ----------~~~~~~~---~~~v~~~---~~------------------------------~~~~-------------- 256 (660)
++..+.. ..+-..+ +. +...
T Consensus 295 ~~~~~~~~~~~~~~~~~~~~~~~~~q~~~f~~~~~~~~~~~ll~~~gir~~~~l~~~~~f~~e~~~~k~~~~~~e~~~~~ 374 (746)
T KOG0354|consen 295 SDKSTSYEQWVVQAEKAAAPNGPENQRNCFYALHLRKYNLALLISDGIRFVDALDYLEDFYEEVALKKYLKLELEARLIR 374 (746)
T ss_pred ccccccccchhhhhhhhhccCCCccchhhHHHHHHHHHHHHHHhhcchhhHHHHhhhhhhccccchhHHHHHHhcchhhH
Confidence 0000000 0000000 00 0000
Q ss_pred -------------------hhHHHHHHHHHHHHHhcCCCCcEEEEcCCHHHHHHHHHHHHHHhhhccCCCCCeEEEEcc-
Q 006122 257 -------------------SDYVQAAVSTVLLIHDKEPPGDILVFLTGQDDIDATIQLLTEEARTSKKNSSGLIILPLY- 316 (660)
Q Consensus 257 -------------------~~~~~~~~~~~~~~~~~~~~~~iLVF~~~~~~i~~l~~~L~~~~~~~~~~~~~~~v~~lh- 316 (660)
...++...+.+.+.....+...+|||+.+|+.+..+...|.+.... ...+...++.-+
T Consensus 375 ~~~~~m~~~~~l~~~~~~~npkle~l~~~l~e~f~~~~dsR~IIFve~R~sa~~l~~~l~~~~~~--~ir~~~fiGq~~s 452 (746)
T KOG0354|consen 375 NFTENMNELEHLSLDPPKENPKLEKLVEILVEQFEQNPDSRTIIFVETRESALALKKWLLQLHEL--GIKAEIFIGQGKS 452 (746)
T ss_pred HHHHHHHhhhhhhcCCCccChhHHHHHHHHHHHhhcCCCccEEEEEehHHHHHHHHHHHHhhhhc--ccccceeeecccc
Confidence 0011222233333334556678999999999999999999863211 112233333333
Q ss_pred ---CCCCHHHHhhhcCCCCCCCcEEEEeCCCcccccCCCCeEEEEeCCCccceeecCCCCcccceeeecCHHhHHHhhcc
Q 006122 317 ---SGLSRAEQEQVFSPTPRGKRKVVISTNIAETSLTLEGIVYVVDSGFSKQRFYNPISDIENLVVAPISKASARQRAGR 393 (660)
Q Consensus 317 ---~~l~~~~r~~v~~~f~~g~~~vlvaT~i~e~Gidip~v~~VId~g~~k~~~~~~~~~~~~l~~~~~s~~~~~QR~GR 393 (660)
.+|++.+|+++++.|++|..+|||||+++|+|+||+.++.||-+|. -.+....+||+||
T Consensus 453 ~~~~gmtqk~Q~evl~~Fr~G~~NvLVATSV~EEGLDI~ec~lVIcYd~------------------~snpIrmIQrrGR 514 (746)
T KOG0354|consen 453 TQSTGMTQKEQKEVLDKFRDGEINVLVATSVAEEGLDIGECNLVICYDY------------------SSNPIRMVQRRGR 514 (746)
T ss_pred ccccccCHHHHHHHHHHHhCCCccEEEEecchhccCCcccccEEEEecC------------------CccHHHHHHHhcc
Confidence 4899999999999999999999999999999999999999998555 3456677799999
Q ss_pred cCCCCCcEEEEccCh
Q 006122 394 AGRVRPGKCYRLYTE 408 (660)
Q Consensus 394 aGR~~~G~~~~l~~~ 408 (660)
||.+.|+|+.|++.
T Consensus 515 -gRa~ns~~vll~t~ 528 (746)
T KOG0354|consen 515 -GRARNSKCVLLTTG 528 (746)
T ss_pred -ccccCCeEEEEEcc
Confidence 99999999999984
No 65
>KOG0327 consensus Translation initiation factor 4F, helicase subunit (eIF-4A) and related helicases [Translation, ribosomal structure and biogenesis]
Probab=99.97 E-value=4.4e-31 Score=260.81 Aligned_cols=338 Identities=21% Similarity=0.248 Sum_probs=260.7
Q ss_pred ccccCCCCCCCccchHhHHHHhcCCCcHHHHHHHHHHHhcCCEEEEEcCCCCcHH--HHHHHHHHhccccCCCeEEEEeC
Q 006122 25 LSSSLSSASSIGYGYASIEKQRQRLPVYKYRTAILYLVETHATTIIVGETGSGKT--TQIPQYLKEAGWADGGRVIACTQ 102 (660)
Q Consensus 25 ~~~~~~~~~~~~~~~~~~~~~~~~lPi~~~~~~i~~~l~~~~~vii~apTGsGKT--~~ip~~l~~~~~~~~~~~i~v~p 102 (660)
.-.+|.+.++....++.+......-|...||.+|+..+. +.++++++.+|+||| +.++.+...+.-.....+++++|
T Consensus 24 vvdsfddm~L~e~LLrgiy~yGFekPSaIQqraI~p~i~-G~dv~~qaqsgTgKt~af~i~iLq~iD~~~ke~qalilaP 102 (397)
T KOG0327|consen 24 VVDSFDDMNLKESLLRGIYAYGFEKPSAIQQRAILPCIK-GHDVIAQAQSGTGKTAAFLISILQQIDMSVKETQALILAP 102 (397)
T ss_pred HhhhhhhcCCCHHHHhHHHhhccCCchHHHhcccccccc-CCceeEeeeccccchhhhHHHHHhhcCcchHHHHHHHhcc
Confidence 345799999999999999999999999999999988775 566999999999999 44443333232223355789999
Q ss_pred chHHHHH--HHHHHHHHHhCCeeeeEEeeeeec-cc-cCCCCCceEEEechHHHHHHHhcCCC-CCCCcEEEEeCCCcCC
Q 006122 103 PRRLAVQ--AVASRVAEEMGVKVGEEVGYTIRF-ED-FTNKDLTAIKFLTDGVLLREMMDDPL-LTKYSVIMVDEAHERS 177 (660)
Q Consensus 103 ~r~la~~--~~~~~~~~~~~~~~~~~vg~~~~~-~~-~~~~~~~~I~v~T~~~ll~~l~~~~~-l~~~~~iIiDE~Her~ 177 (660)
+|+|+.| .+...+...++..+...+|..... +. .......+|+++|||.++..+....+ ...+.++|+||++| +
T Consensus 103 treLa~qi~~v~~~lg~~~~~~v~~~igg~~~~~~~~~i~~~~~hivvGTpgrV~dml~~~~l~~~~iKmfvlDEaDE-m 181 (397)
T KOG0327|consen 103 TRELAQQIQKVVRALGDHMDVSVHACIGGTNVRREDQALLKDKPHIVVGTPGRVFDMLNRGSLSTDGIKMFVLDEADE-M 181 (397)
T ss_pred hHHHHHHHHHHHHhhhcccceeeeeecCcccchhhhhhhhccCceeecCCchhHHHhhccccccccceeEEeecchHh-h
Confidence 9999988 444455566677777777744333 22 22333689999999999999876665 66799999999997 4
Q ss_pred cChhHHHHHHHHHHHhcCCceEEEeecccc--hHHHHHHhhcCCCCCCCcccccCCCCCCeEEEECCc---cccceEEec
Q 006122 178 ISTDILLGLLKKIQRCRSDLRLIISSATIE--AKSMSAFFHARKGRRGLEGVELVPRLEPAILSVEGR---GFNVQIHYV 252 (660)
Q Consensus 178 ~~~d~ll~~l~~~~~~~~~~kii~~SAT~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~v~~~~~ 252 (660)
+..++...+........++.|++++|||++ ...+.+-|...|.. +.+... ...++.+|.
T Consensus 182 Ls~gfkdqI~~if~~lp~~vQv~l~SAT~p~~vl~vt~~f~~~pv~----------------i~vkk~~ltl~gikq~~i 245 (397)
T KOG0327|consen 182 LSRGFKDQIYDIFQELPSDVQVVLLSATMPSDVLEVTKKFMREPVR----------------ILVKKDELTLEGIKQFYI 245 (397)
T ss_pred hccchHHHHHHHHHHcCcchhheeecccCcHHHHHHHHHhccCceE----------------EEecchhhhhhheeeeee
Confidence 455577777777777889999999999994 44556666665532 211111 122333444
Q ss_pred CCCchhHHHHHHHHHHHHHhcCCCCcEEEEcCCHHHHHHHHHHHHHHhhhccCCCCCeEEEEccCCCCHHHHhhhcCCCC
Q 006122 253 EEPVSDYVQAAVSTVLLIHDKEPPGDILVFLTGQDDIDATIQLLTEEARTSKKNSSGLIILPLYSGLSRAEQEQVFSPTP 332 (660)
Q Consensus 253 ~~~~~~~~~~~~~~~~~~~~~~~~~~iLVF~~~~~~i~~l~~~L~~~~~~~~~~~~~~~v~~lh~~l~~~~r~~v~~~f~ 332 (660)
...... ....+.+++. .-.+.+|||+|++.+..+...|... +..+..+|+.|.+.+|..+...|+
T Consensus 246 ~v~k~~----k~~~l~dl~~--~~~q~~if~nt~r~v~~l~~~L~~~---------~~~~s~~~~d~~q~~R~~~~~ef~ 310 (397)
T KOG0327|consen 246 NVEKEE----KLDTLCDLYR--RVTQAVIFCNTRRKVDNLTDKLRAH---------GFTVSAIHGDMEQNERDTLMREFR 310 (397)
T ss_pred eccccc----cccHHHHHHH--hhhcceEEecchhhHHHHHHHHhhC---------CceEEEeecccchhhhhHHHHHhh
Confidence 333333 3444555555 5566899999999999999999554 889999999999999999999999
Q ss_pred CCCcEEEEeCCCcccccCCCCeEEEEeCCCccceeecCCCCcccceeeecCHHhHHHhhcccCCC-CCcEEEEccChHHh
Q 006122 333 RGKRKVVISTNIAETSLTLEGIVYVVDSGFSKQRFYNPISDIENLVVAPISKASARQRAGRAGRV-RPGKCYRLYTEEYF 411 (660)
Q Consensus 333 ~g~~~vlvaT~i~e~Gidip~v~~VId~g~~k~~~~~~~~~~~~l~~~~~s~~~~~QR~GRaGR~-~~G~~~~l~~~~~~ 411 (660)
.|..+||++|+.+++|+|+-.+..||++.+ |..+.+|.||+||+||. ++|..+.++++++.
T Consensus 311 ~gssrvlIttdl~argidv~~~slvinydl------------------P~~~~~yihR~gr~gr~grkg~~in~v~~~d~ 372 (397)
T KOG0327|consen 311 SGSSRVLITTDLLARGIDVQQVSLVVNYDL------------------PARKENYIHRIGRAGRFGRKGVAINFVTEEDV 372 (397)
T ss_pred cCCceEEeeccccccccchhhcceeeeecc------------------ccchhhhhhhcccccccCCCceeeeeehHhhH
Confidence 999999999999999999999999999777 88889999999999999 99999999998765
Q ss_pred hh
Q 006122 412 VK 413 (660)
Q Consensus 412 ~~ 413 (660)
..
T Consensus 373 ~~ 374 (397)
T KOG0327|consen 373 RD 374 (397)
T ss_pred HH
Confidence 54
No 66
>KOG0341 consensus DEAD-box protein abstrakt [RNA processing and modification]
Probab=99.97 E-value=4e-31 Score=258.96 Aligned_cols=347 Identities=19% Similarity=0.227 Sum_probs=237.7
Q ss_pred CCCCcccccccCCCCCCCccchHhHHHHhcCCCcHHHHHHHHHHHhcCCEEEEEcCCCCcHH--HHHHHHHHhcc-----
Q 006122 18 EEGGVVFLSSSLSSASSIGYGYASIEKQRQRLPVYKYRTAILYLVETHATTIIVGETGSGKT--TQIPQYLKEAG----- 90 (660)
Q Consensus 18 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lPi~~~~~~i~~~l~~~~~vii~apTGsGKT--~~ip~~l~~~~----- 90 (660)
.+..+.+++ +|...-|..+.+..+.+..---|...+ -+=+..+.++++.|-.|-|||||| |.+|.++....
T Consensus 162 Gd~ipPPIk-sF~eMKFP~~~L~~lk~KGI~~PTpIQ-vQGlPvvLsGRDmIGIAfTGSGKTlvFvLP~imf~LeqE~~l 239 (610)
T KOG0341|consen 162 GDDIPPPIK-SFKEMKFPKPLLRGLKKKGIVHPTPIQ-VQGLPVVLSGRDMIGIAFTGSGKTLVFVLPVIMFALEQEMML 239 (610)
T ss_pred CCCCCCchh-hhhhccCCHHHHHHHHhcCCCCCCcee-ecCcceEeecCceeeEEeecCCceEEEeHHHHHHHHHHHhcC
Confidence 444444444 577777777777666553333343333 233444567888999999999999 78887665321
Q ss_pred ---ccCCCeEEEEeCchHHHHH--HHHHHHHHHh---C---CeeeeEEe-eeeeccccCCCCCceEEEechHHHHHHHhc
Q 006122 91 ---WADGGRVIACTQPRRLAVQ--AVASRVAEEM---G---VKVGEEVG-YTIRFEDFTNKDLTAIKFLTDGVLLREMMD 158 (660)
Q Consensus 91 ---~~~~~~~i~v~p~r~la~~--~~~~~~~~~~---~---~~~~~~vg-~~~~~~~~~~~~~~~I~v~T~~~ll~~l~~ 158 (660)
...++--++++|.|+||.| .+...+...+ | ...+..+| ..++..........+|+|+|||+|.+.+..
T Consensus 240 Pf~~~EGP~gLiicPSRELArQt~~iie~~~~~L~e~g~P~lRs~LciGG~~v~eql~~v~~GvHivVATPGRL~DmL~K 319 (610)
T KOG0341|consen 240 PFARGEGPYGLIICPSRELARQTHDIIEQYVAALQEAGYPELRSLLCIGGVPVREQLDVVRRGVHIVVATPGRLMDMLAK 319 (610)
T ss_pred ccccCCCCeeEEEcCcHHHHHHHHHHHHHHHHHHHhcCChhhhhhhhhcCccHHHHHHHHhcCeeEEEcCcchHHHHHHH
Confidence 1234556889999999988 3333333222 1 12233333 222222222233789999999999999877
Q ss_pred CCC-CCCCcEEEEeCCCcCCcChhHHHHHHHHHHHhcCCceEEEeecccchHHHHHHhhcCCCCCCCcccccCCCCCCeE
Q 006122 159 DPL-LTKYSVIMVDEAHERSISTDILLGLLKKIQRCRSDLRLIISSATIEAKSMSAFFHARKGRRGLEGVELVPRLEPAI 237 (660)
Q Consensus 159 ~~~-l~~~~~iIiDE~Her~~~~d~ll~~l~~~~~~~~~~kii~~SAT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 237 (660)
+.. |.-.+++.+|||+ |.++..|-..+-..+-......|.+++|||++.. ++.|-....+. | +
T Consensus 320 K~~sLd~CRyL~lDEAD-RmiDmGFEddir~iF~~FK~QRQTLLFSATMP~K-IQ~FAkSALVK-------------P-v 383 (610)
T KOG0341|consen 320 KIMSLDACRYLTLDEAD-RMIDMGFEDDIRTIFSFFKGQRQTLLFSATMPKK-IQNFAKSALVK-------------P-V 383 (610)
T ss_pred hhccHHHHHHhhhhhHH-HHhhccchhhHHHHHHHHhhhhheeeeeccccHH-HHHHHHhhccc-------------c-e
Confidence 665 8888999999999 8999887766655555556778999999999643 44444443311 1 1
Q ss_pred EEECCccccceEEecCCCchhHHHHHHHHH-HHHHhcCCCCcEEEEcCCHHHHHHHHHHHHHHhhhccCCCCCeEEEEcc
Q 006122 238 LSVEGRGFNVQIHYVEEPVSDYVQAAVSTV-LLIHDKEPPGDILVFLTGQDDIDATIQLLTEEARTSKKNSSGLIILPLY 316 (660)
Q Consensus 238 ~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~iLVF~~~~~~i~~l~~~L~~~~~~~~~~~~~~~v~~lh 316 (660)
...-||.-.-..... ..-+|+.+-...+ +--+......++|||+..+.++..+.++|--. ++.+..+|
T Consensus 384 tvNVGRAGAAsldVi--QevEyVkqEaKiVylLeCLQKT~PpVLIFaEkK~DVD~IhEYLLlK---------GVEavaIH 452 (610)
T KOG0341|consen 384 TVNVGRAGAASLDVI--QEVEYVKQEAKIVYLLECLQKTSPPVLIFAEKKADVDDIHEYLLLK---------GVEAVAIH 452 (610)
T ss_pred EEecccccccchhHH--HHHHHHHhhhhhhhHHHHhccCCCceEEEeccccChHHHHHHHHHc---------cceeEEee
Confidence 111122110000000 0112333222222 11223345667999999999999999998654 89999999
Q ss_pred CCCCHHHHhhhcCCCCCCCcEEEEeCCCcccccCCCCeEEEEeCCCccceeecCCCCcccceeeecCHHhHHHhhcccCC
Q 006122 317 SGLSRAEQEQVFSPTPRGKRKVVISTNIAETSLTLEGIVYVVDSGFSKQRFYNPISDIENLVVAPISKASARQRAGRAGR 396 (660)
Q Consensus 317 ~~l~~~~r~~v~~~f~~g~~~vlvaT~i~e~Gidip~v~~VId~g~~k~~~~~~~~~~~~l~~~~~s~~~~~QR~GRaGR 396 (660)
||-++++|...++.|+.|+-+|+|||++++.|+|+|+|.+|||+++ |-...+|.||+||+||
T Consensus 453 GGKDQedR~~ai~afr~gkKDVLVATDVASKGLDFp~iqHVINyDM------------------P~eIENYVHRIGRTGR 514 (610)
T KOG0341|consen 453 GGKDQEDRHYAIEAFRAGKKDVLVATDVASKGLDFPDIQHVINYDM------------------PEEIENYVHRIGRTGR 514 (610)
T ss_pred cCcchhHHHHHHHHHhcCCCceEEEecchhccCCCccchhhccCCC------------------hHHHHHHHHHhcccCC
Confidence 9999999999999999999999999999999999999999999888 8889999999999999
Q ss_pred C-CCcEEEEccChHHh
Q 006122 397 V-RPGKCYRLYTEEYF 411 (660)
Q Consensus 397 ~-~~G~~~~l~~~~~~ 411 (660)
. +.|.+-.++.+..-
T Consensus 515 sg~~GiATTfINK~~~ 530 (610)
T KOG0341|consen 515 SGKTGIATTFINKNQE 530 (610)
T ss_pred CCCcceeeeeecccch
Confidence 9 88998888876543
No 67
>KOG4284 consensus DEAD box protein [Transcription]
Probab=99.97 E-value=7.6e-30 Score=264.36 Aligned_cols=338 Identities=17% Similarity=0.201 Sum_probs=251.4
Q ss_pred ccccCCCCCCCccchHhHHHHhcCCCcHHHHHHHHHHHhcCCEEEEEcCCCCcHHHHHHHHHHhcc--ccCCCeEEEEeC
Q 006122 25 LSSSLSSASSIGYGYASIEKQRQRLPVYKYRTAILYLVETHATTIIVGETGSGKTTQIPQYLKEAG--WADGGRVIACTQ 102 (660)
Q Consensus 25 ~~~~~~~~~~~~~~~~~~~~~~~~lPi~~~~~~i~~~l~~~~~vii~apTGsGKT~~ip~~l~~~~--~~~~~~~i~v~p 102 (660)
-+..|..+-+.++....+.+....+|...+-.+|.. +..+=++||++..|+|||.+...+..+.. .......++++|
T Consensus 23 ~~~~fe~l~l~r~vl~glrrn~f~~ptkiQaaAIP~-~~~kmDliVQaKSGTGKTlVfsv~av~sl~~~~~~~q~~Iv~P 101 (980)
T KOG4284|consen 23 CTPGFEQLALWREVLLGLRRNAFALPTKIQAAAIPA-IFSKMDLIVQAKSGTGKTLVFSVLAVESLDSRSSHIQKVIVTP 101 (980)
T ss_pred CCCCHHHHHHHHHHHHHHHhhcccCCCchhhhhhhh-hhcccceEEEecCCCCceEEEEeeeehhcCcccCcceeEEEec
Confidence 445677777888877777777778888766665554 44555699999999999933322222221 112356799999
Q ss_pred chHHHHH--HHHHHHHH-HhCCeeeeEEeeeeeccccCCCCCceEEEechHHHHHHHhcCCC-CCCCcEEEEeCCCcCCc
Q 006122 103 PRRLAVQ--AVASRVAE-EMGVKVGEEVGYTIRFEDFTNKDLTAIKFLTDGVLLREMMDDPL-LTKYSVIMVDEAHERSI 178 (660)
Q Consensus 103 ~r~la~~--~~~~~~~~-~~~~~~~~~vg~~~~~~~~~~~~~~~I~v~T~~~ll~~l~~~~~-l~~~~~iIiDE~Her~~ 178 (660)
+|+++.| .....++. ..|..+...+|....-.+...-..++|+|+|||++.++...+.+ ..+++++|+|||+ ..+
T Consensus 102 TREiaVQI~~tv~~v~~sf~g~~csvfIGGT~~~~d~~rlk~~rIvIGtPGRi~qL~el~~~n~s~vrlfVLDEAD-kL~ 180 (980)
T KOG4284|consen 102 TREIAVQIKETVRKVAPSFTGARCSVFIGGTAHKLDLIRLKQTRIVIGTPGRIAQLVELGAMNMSHVRLFVLDEAD-KLM 180 (980)
T ss_pred chhhhhHHHHHHHHhcccccCcceEEEecCchhhhhhhhhhhceEEecCchHHHHHHHhcCCCccceeEEEeccHH-hhh
Confidence 9999988 44445554 45778888888654333333323799999999999999877766 8999999999999 456
Q ss_pred ChhHHHHHHHHHH-HhcCCceEEEeecccch---HHHHHHhhcCCCCCCCcccccCCCCCCeEEEECCc---cccceEEe
Q 006122 179 STDILLGLLKKIQ-RCRSDLRLIISSATIEA---KSMSAFFHARKGRRGLEGVELVPRLEPAILSVEGR---GFNVQIHY 251 (660)
Q Consensus 179 ~~d~ll~~l~~~~-~~~~~~kii~~SAT~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~v~~~~ 251 (660)
++..+..-+..+. .+....|++++|||.+- +.++.|+.+.. .+....+ .+.++.++
T Consensus 181 ~t~sfq~~In~ii~slP~~rQv~a~SATYp~nLdn~Lsk~mrdp~-----------------lVr~n~~d~~L~GikQyv 243 (980)
T KOG4284|consen 181 DTESFQDDINIIINSLPQIRQVAAFSATYPRNLDNLLSKFMRDPA-----------------LVRFNADDVQLFGIKQYV 243 (980)
T ss_pred chhhHHHHHHHHHHhcchhheeeEEeccCchhHHHHHHHHhcccc-----------------eeecccCCceeechhhee
Confidence 6555555555544 46667889999999832 34667766543 3333322 24555555
Q ss_pred cCCCchh----HHHHHHHHHHHHHhcCCCCcEEEEcCCHHHHHHHHHHHHHHhhhccCCCCCeEEEEccCCCCHHHHhhh
Q 006122 252 VEEPVSD----YVQAAVSTVLLIHDKEPPGDILVFLTGQDDIDATIQLLTEEARTSKKNSSGLIILPLYSGLSRAEQEQV 327 (660)
Q Consensus 252 ~~~~~~~----~~~~~~~~~~~~~~~~~~~~iLVF~~~~~~i~~l~~~L~~~~~~~~~~~~~~~v~~lh~~l~~~~r~~v 327 (660)
...+..+ .....+..+-++...-+-.+.||||+....++.++..|... ++.+.++.|.|++.+|..+
T Consensus 244 ~~~~s~nnsveemrlklq~L~~vf~~ipy~QAlVF~~~~sra~~~a~~L~ss---------G~d~~~ISgaM~Q~~Rl~a 314 (980)
T KOG4284|consen 244 VAKCSPNNSVEEMRLKLQKLTHVFKSIPYVQALVFCDQISRAEPIATHLKSS---------GLDVTFISGAMSQKDRLLA 314 (980)
T ss_pred eeccCCcchHHHHHHHHHHHHHHHhhCchHHHHhhhhhhhhhhHHHHHhhcc---------CCCeEEeccccchhHHHHH
Confidence 5444332 23334455556666667788999999999999999999765 8999999999999999999
Q ss_pred cCCCCCCCcEEEEeCCCcccccCCCCeEEEEeCCCccceeecCCCCcccceeeecCHHhHHHhhcccCCC-CCcEEEEcc
Q 006122 328 FSPTPRGKRKVVISTNIAETSLTLEGIVYVVDSGFSKQRFYNPISDIENLVVAPISKASARQRAGRAGRV-RPGKCYRLY 406 (660)
Q Consensus 328 ~~~f~~g~~~vlvaT~i~e~Gidip~v~~VId~g~~k~~~~~~~~~~~~l~~~~~s~~~~~QR~GRaGR~-~~G~~~~l~ 406 (660)
++.+++-..+|||+|+..++|||-|+++.||+-+. |.+-..|.||+|||||. ..|..+.++
T Consensus 315 ~~~lr~f~~rILVsTDLtaRGIDa~~vNLVVNiD~------------------p~d~eTY~HRIGRAgRFG~~G~aVT~~ 376 (980)
T KOG4284|consen 315 VDQLRAFRVRILVSTDLTARGIDADNVNLVVNIDA------------------PADEETYFHRIGRAGRFGAHGAAVTLL 376 (980)
T ss_pred HHHhhhceEEEEEecchhhccCCccccceEEecCC------------------CcchHHHHHHhhhcccccccceeEEEe
Confidence 99999999999999999999999999999999665 88889999999999999 789888877
Q ss_pred Ch
Q 006122 407 TE 408 (660)
Q Consensus 407 ~~ 408 (660)
..
T Consensus 377 ~~ 378 (980)
T KOG4284|consen 377 ED 378 (980)
T ss_pred cc
Confidence 54
No 68
>TIGR01587 cas3_core CRISPR-associated helicase Cas3. This model represents the highly conserved core region of an alignment of Cas3, a protein found in association with CRISPR repeat elements in a broad range of bacteria and archaea. Cas3 appears to be a helicase, with regions found by pfam00270 (DEAD/DEAH box helicase) and pfam00271 (Helicase conserved C-terminal domain). Some but not all members have an N-terminal HD domain region (pfam01966) that is not included within this model.
Probab=99.97 E-value=5e-29 Score=264.47 Aligned_cols=299 Identities=19% Similarity=0.200 Sum_probs=184.4
Q ss_pred EEEEEcCCCCcHHHHHHHHHHhccc-cCCCeEEEEeCchHHHHHHHHHHHHHHhCCeeeeEEeeee------e-----cc
Q 006122 67 TTIIVGETGSGKTTQIPQYLKEAGW-ADGGRVIACTQPRRLAVQAVASRVAEEMGVKVGEEVGYTI------R-----FE 134 (660)
Q Consensus 67 ~vii~apTGsGKT~~ip~~l~~~~~-~~~~~~i~v~p~r~la~~~~~~~~~~~~~~~~~~~vg~~~------~-----~~ 134 (660)
+++|+||||||||.+...+++.... ....++++++|.+.++. +..+++...++..++...|... . .+
T Consensus 1 ~vvi~apTGsGKT~~~~~~~l~~~~~~~~~~ii~v~P~~~L~~-q~~~~l~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~ 79 (358)
T TIGR01587 1 LLVIEAPTGYGKTEAALLWALHSIKSQKADRVIIALPTRATIN-AMYRRAKELFGSNLGLLHSSSSFKRIKEMGDSEEFE 79 (358)
T ss_pred CEEEEeCCCCCHHHHHHHHHHHHHhhCCCCeEEEEeehHHHHH-HHHHHHHHHhCcccEEeeccHHHHHHhccCCchhHH
Confidence 4799999999999766655554321 23457788888777765 5566666666655554433111 0 00
Q ss_pred cc-----CC---CCCceEEEechHHHHHHHhcCC-------CCCCCcEEEEeCCCcCCcC-hhHHHHHHHHHHHhcCCce
Q 006122 135 DF-----TN---KDLTAIKFLTDGVLLREMMDDP-------LLTKYSVIMVDEAHERSIS-TDILLGLLKKIQRCRSDLR 198 (660)
Q Consensus 135 ~~-----~~---~~~~~I~v~T~~~ll~~l~~~~-------~l~~~~~iIiDE~Her~~~-~d~ll~~l~~~~~~~~~~k 198 (660)
.. .. .....|+++||+.++..+.... .....++||+||+|..... .+.+..+++.+. ..+.+
T Consensus 80 ~~~~~~~~~~~~~~~~~I~v~T~~~l~~~~~~~~~~~~~~~~~~~~~~iViDE~h~~~~~~~~~l~~~l~~l~--~~~~~ 157 (358)
T TIGR01587 80 HLFPLYIHSNDKLFLDPITVCTIDQVLKSVFGEFGHYEFTLASIANSLLIFDEVHFYDEYTLALILAVLEVLK--DNDVP 157 (358)
T ss_pred HHHHHHhhchhhhhhCCeeeCCHHHHHHHHhcccchHHHHHHHhcCCEEEEeCCCCCCHHHHHHHHHHHHHHH--HcCCC
Confidence 00 00 0136799999999988776521 0123489999999954322 234444444443 34789
Q ss_pred EEEeecccchHHHHHHhhcCCCCCCCcccccCCCCCCeEEEECCccccceEEecCCCchhHHHHHHHHHHHHHhcCCCCc
Q 006122 199 LIISSATIEAKSMSAFFHARKGRRGLEGVELVPRLEPAILSVEGRGFNVQIHYVEEPVSDYVQAAVSTVLLIHDKEPPGD 278 (660)
Q Consensus 199 ii~~SAT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 278 (660)
+++||||++ +.+.+|+............+ ..... ....++... ......... ..+..++... ..+++
T Consensus 158 ~i~~SATlp-~~l~~~~~~~~~~~~~~~~~------~~~~~-~~~~~~~~~--~~~~~~~~~-~~l~~l~~~~--~~~~~ 224 (358)
T TIGR01587 158 ILLMSATLP-KFLKEYAEKIGYVEFNEPLD------LKEER-RFERHRFIK--IESDKVGEI-SSLERLLEFI--KKGGK 224 (358)
T ss_pred EEEEecCch-HHHHHHHhcCCCcccccCCC------Ccccc-cccccccee--eccccccCH-HHHHHHHHHh--hCCCe
Confidence 999999996 45667665432110000000 00000 000111110 011000111 1122222221 34678
Q ss_pred EEEEcCCHHHHHHHHHHHHHHhhhccCCCCCeEEEEccCCCCHHHHhhh----cCCCCCCCcEEEEeCCCcccccCCCCe
Q 006122 279 ILVFLTGQDDIDATIQLLTEEARTSKKNSSGLIILPLYSGLSRAEQEQV----FSPTPRGKRKVVISTNIAETSLTLEGI 354 (660)
Q Consensus 279 iLVF~~~~~~i~~l~~~L~~~~~~~~~~~~~~~v~~lh~~l~~~~r~~v----~~~f~~g~~~vlvaT~i~e~Gidip~v 354 (660)
+||||+++++++.+++.|.+.. ....+..+||++++.+|.++ ++.|++|..+|||||+++++|+||| +
T Consensus 225 ~lVf~~t~~~~~~~~~~L~~~~-------~~~~~~~~h~~~~~~~r~~~~~~~~~~f~~~~~~ilvaT~~~~~GiDi~-~ 296 (358)
T TIGR01587 225 IAIIVNTVDRAQEFYQQLKENA-------PEEEIMLLHSRFTEKDRAKKEAELLEEMKKNEKFVIVATQVIEASLDIS-A 296 (358)
T ss_pred EEEEECCHHHHHHHHHHHHhhc-------CCCeEEEEECCCCHHHHHHHHHHHHHHhcCCCCeEEEECcchhceeccC-C
Confidence 9999999999999999998762 13469999999999999764 8889999999999999999999997 6
Q ss_pred EEEEeCCCccceeecCCCCcccceeeecCHHhHHHhhcccCCC--CC---cEEEEccChH
Q 006122 355 VYVVDSGFSKQRFYNPISDIENLVVAPISKASARQRAGRAGRV--RP---GKCYRLYTEE 409 (660)
Q Consensus 355 ~~VId~g~~k~~~~~~~~~~~~l~~~~~s~~~~~QR~GRaGR~--~~---G~~~~l~~~~ 409 (660)
++||.. +.+..+|.||+||+||. +. |.+|.+....
T Consensus 297 ~~vi~~--------------------~~~~~~~iqr~GR~gR~g~~~~~~~~~~v~~~~~ 336 (358)
T TIGR01587 297 DVMITE--------------------LAPIDSLIQRLGRLHRYGRKNGENFEVYIITIAP 336 (358)
T ss_pred CEEEEc--------------------CCCHHHHHHHhccccCCCCCCCCCCeEEEEeecC
Confidence 777752 34567899999999997 22 3667766544
No 69
>KOG0951 consensus RNA helicase BRR2, DEAD-box superfamily [RNA processing and modification]
Probab=99.96 E-value=1.2e-28 Score=271.36 Aligned_cols=476 Identities=16% Similarity=0.143 Sum_probs=297.3
Q ss_pred cHHHHHHHHHH-HhcCCEEEEEcCCCCcHHHHHHHHHH-hccc--c-------CCCeEEEEeCchHHHHHHHH--HHHHH
Q 006122 51 VYKYRTAILYL-VETHATTIIVGETGSGKTTQIPQYLK-EAGW--A-------DGGRVIACTQPRRLAVQAVA--SRVAE 117 (660)
Q Consensus 51 i~~~~~~i~~~-l~~~~~vii~apTGsGKT~~ip~~l~-~~~~--~-------~~~~~i~v~p~r~la~~~~~--~~~~~ 117 (660)
+...|..+..+ +....++++|||||+|||-..-.-++ +... . ...+++|++|.+.|+...+- .+-..
T Consensus 310 LNrIQS~v~daAl~~~EnmLlCAPTGaGKTNVAvLtiLqel~~h~r~dgs~nl~~fKIVYIAPmKaLvqE~VgsfSkRla 389 (1674)
T KOG0951|consen 310 LNRIQSKVYDAALRGDENMLLCAPTGAGKTNVAVLTILQELGNHLREDGSVNLAPFKIVYIAPMKALVQEMVGSFSKRLA 389 (1674)
T ss_pred hhHHHHHHHHHHhcCcCcEEEeccCCCCchHHHHHHHHHHHhcccccccceecccceEEEEeeHHHHHHHHHHHHHhhcc
Confidence 34445555544 45567899999999999933322222 2111 1 12367999999999887554 22234
Q ss_pred HhCCeeeeEEeeeeeccccCCCCCceEEEechHHHHHHHhcCC---CCCCCcEEEEeCCC----cCCcChhHHHHHHHHH
Q 006122 118 EMGVKVGEEVGYTIRFEDFTNKDLTAIKFLTDGVLLREMMDDP---LLTKYSVIMVDEAH----ERSISTDILLGLLKKI 190 (660)
Q Consensus 118 ~~~~~~~~~vg~~~~~~~~~~~~~~~I~v~T~~~ll~~l~~~~---~l~~~~~iIiDE~H----er~~~~d~ll~~l~~~ 190 (660)
.+|+.|+..+|........ .. .++|+++||+..--.-.++. ..+-++++||||+| +|+. .+..+..+.
T Consensus 390 ~~GI~V~ElTgD~~l~~~q-ie-eTqVIV~TPEK~DiITRk~gdraY~qlvrLlIIDEIHLLhDdRGp---vLESIVaRt 464 (1674)
T KOG0951|consen 390 PLGITVLELTGDSQLGKEQ-IE-ETQVIVTTPEKWDIITRKSGDRAYEQLVRLLIIDEIHLLHDDRGP---VLESIVART 464 (1674)
T ss_pred ccCcEEEEecccccchhhh-hh-cceeEEeccchhhhhhcccCchhHHHHHHHHhhhhhhhcccccch---HHHHHHHHH
Confidence 5789999988854332222 22 69999999998754333322 25678999999998 3444 343333332
Q ss_pred H----HhcCCceEEEeeccc-chHHHHHHhhcCCCCCCCcccccCCCCCCeEEEECCccccceEEecCCCchhHHHH---
Q 006122 191 Q----RCRSDLRLIISSATI-EAKSMSAFFHARKGRRGLEGVELVPRLEPAILSVEGRGFNVQIHYVEEPVSDYVQA--- 262 (660)
Q Consensus 191 ~----~~~~~~kii~~SAT~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~--- 262 (660)
. ......+++++|||+ |.++++.|+...+.. ...+...-|+.|++..|......+....
T Consensus 465 ~r~ses~~e~~RlVGLSATLPNy~DV~~Fl~v~~~g-------------lf~fd~syRpvPL~qq~Igi~ek~~~~~~qa 531 (1674)
T KOG0951|consen 465 FRRSESTEEGSRLVGLSATLPNYEDVASFLRVDPEG-------------LFYFDSSYRPVPLKQQYIGITEKKPLKRFQA 531 (1674)
T ss_pred HHHhhhcccCceeeeecccCCchhhhHHHhccCccc-------------ccccCcccCcCCccceEeccccCCchHHHHH
Confidence 2 234679999999999 888899888765411 1122224456677777766544332222
Q ss_pred HHHHH-HHHHhcCCCCcEEEEcCCHHHHHHHHHHHHHHhhh----------c------------------cCCCCCeEEE
Q 006122 263 AVSTV-LLIHDKEPPGDILVFLTGQDDIDATIQLLTEEART----------S------------------KKNSSGLIIL 313 (660)
Q Consensus 263 ~~~~~-~~~~~~~~~~~iLVF~~~~~~i~~l~~~L~~~~~~----------~------------------~~~~~~~~v~ 313 (660)
..+.. -.+......+++|||+-+|++.-+.|+.+++.+-. . ..+.-.+.++
T Consensus 532 mNe~~yeKVm~~agk~qVLVFVHsRkET~ktA~aIRd~~le~dtls~fmre~s~s~eilrtea~~~kn~dLkdLLpygfa 611 (1674)
T KOG0951|consen 532 MNEACYEKVLEHAGKNQVLVFVHSRKETAKTARAIRDKALEEDTLSRFMREDSASREILRTEAGQAKNPDLKDLLPYGFA 611 (1674)
T ss_pred HHHHHHHHHHHhCCCCcEEEEEEechHHHHHHHHHHHHHhhhhHHHHHHhcccchhhhhhhhhhcccChhHHHHhhccce
Confidence 11111 22334455689999999999999999999854321 0 0122356799
Q ss_pred EccCCCCHHHHhhhcCCCCCCCcEEEEeCCCcccccCCCCeEEEEeCCCccceeecCCCCcccceeeecCHHhHHHhhcc
Q 006122 314 PLYSGLSRAEQEQVFSPTPRGKRKVVISTNIAETSLTLEGIVYVVDSGFSKQRFYNPISDIENLVVAPISKASARQRAGR 393 (660)
Q Consensus 314 ~lh~~l~~~~r~~v~~~f~~g~~~vlvaT~i~e~Gidip~v~~VId~g~~k~~~~~~~~~~~~l~~~~~s~~~~~QR~GR 393 (660)
.||+||+..+|..+++.|.+|+++|+|+|-++++|+|+|+-+++| ....+|||..|... +.|+.+.+||.||
T Consensus 612 IHhAGl~R~dR~~~EdLf~~g~iqvlvstatlawgvnlpahtVii----kgtqvy~pekg~w~----elsp~dv~qmlgr 683 (1674)
T KOG0951|consen 612 IHHAGLNRKDRELVEDLFADGHIQVLVSTATLAWGVNLPAHTVII----KGTQVYDPEKGRWT----ELSPLDVMQMLGR 683 (1674)
T ss_pred eeccCCCcchHHHHHHHHhcCceeEEEeehhhhhhcCCCcceEEe----cCccccCcccCccc----cCCHHHHHHHHhh
Confidence 999999999999999999999999999999999999999888887 34578999988664 8899999999999
Q ss_pred cCCC---C--CcEEEEccChHHhh-hhCC-CCCCCccccccchhHHHHHHHcCCCCccC------CCC-----C------
Q 006122 394 AGRV---R--PGKCYRLYTEEYFV-KEIP-AEGIPEMQRSNLVSCVIQLKALGIDNILG------FDW-----P------ 449 (660)
Q Consensus 394 aGR~---~--~G~~~~l~~~~~~~-~~~~-~~~~pei~~~~l~~~~l~l~~~~~~~~~~------~~~-----~------ 449 (660)
|||. + .|..+.=+++-.|. +.|. ..++++-.-..|...+-.-+.+|+..... +.| +
T Consensus 684 agrp~~D~~gegiiit~~se~qyyls~mn~qLpiesq~~~rl~d~lnaeiv~Gv~~~~d~~~wl~yTylyvRm~~~p~ly 763 (1674)
T KOG0951|consen 684 AGRPQYDTCGEGIIITDHSELQYYLSLMNQQLPIESQFVSRLADCLNAEIVLGVRSARDAVDWLGYTYLYVRMVRNPTLY 763 (1674)
T ss_pred cCCCccCcCCceeeccCchHhhhhHHhhhhcCCChHHHHHHhhhhhhhhhhcchhhHHHHHhhhcceeeEEeeccCchhc
Confidence 9998 2 33333333332222 1122 22334433344444444444444332211 000 1
Q ss_pred -------CCCC----HHHHHHHHHHHHHCCCCCCC---C--CcchHHHHHhccCCCChhhhHHHHhhcccCchhHHHHHH
Q 006122 450 -------ASPP----PEAMIRALEVLYSLGVLDDD---A--KLTSPTGFQVAEIPLEPMISKMILSSNELGCSEEIITIS 513 (660)
Q Consensus 450 -------~~p~----~~~~~~al~~L~~lgald~~---~--~lT~~lG~~~~~lpl~p~~~~~l~~~~~~~c~~~~~~i~ 513 (660)
|++. .+.+..|...|.+.|.|--+ | ..|+ +|++.+.+++.-......-....-.|.+. .+.
T Consensus 764 ~~~~~~~d~~le~~r~~lvhsa~~ll~~~~li~yd~~s~~~~~te-lg~ias~yyi~~~s~~~yn~~L~~~~~~i--~lf 840 (1674)
T KOG0951|consen 764 GVSPEASDRLLEQRRADLVHSAATLLDKAGLIKYDRKSGAIQATE-LGRIASSYYITHGSMATYNELLKETMSEI--DLF 840 (1674)
T ss_pred cCCcccchHHHHHHHhhhHHHHHhhHhhcCccccccccCcccchh-hccccceeeeecchHHHHHhhhhhhhccc--hhh
Confidence 1111 13466788999999998533 3 5685 99999999997766655555544444433 445
Q ss_pred hhcccCcccccCcchHHHHHHHHHhh-------cCCCCcHHHHHHHHHH
Q 006122 514 AVLSIQSIWVSGRGAQKELDEAKLRF-------AAAEGDHVTFLNIYKG 555 (660)
Q Consensus 514 a~ls~~~~f~~~~~~~~~~~~~~~~~-------~~~~~D~~~~l~~~~~ 555 (660)
.+.|..+-|..-..+.++..+.+... ...-.|..+-.|++-+
T Consensus 841 rifs~seEfk~~svr~~ek~el~~l~~~vpIpire~l~~p~akinvllq 889 (1674)
T KOG0951|consen 841 RIFSKSEEFKYVSVREEEKMELAKLLERVPIPIRENLDEPSAKINVLLQ 889 (1674)
T ss_pred hhhhhccccccCCccHHHHHHhhhhcccCCcCchhccccchHHHHHHHH
Confidence 55555555554333333333332211 1123566677777654
No 70
>TIGR03158 cas3_cyano CRISPR-associated helicase, Cyano-type. subtype of CRISPR/Cas locus, found in several species of Cyanobacteria and several archaeal species. It contains helicase motifs and appears to represent the Cas3 protein of the Cyano subtype of CRISPR/Cas system.
Probab=99.96 E-value=5.3e-28 Score=254.13 Aligned_cols=290 Identities=16% Similarity=0.182 Sum_probs=180.1
Q ss_pred HHHHHHHHHhcCC--EEEEEcCCCCcHHHHHHHHHHhccccCCCeEEEEeCchHHHHHHHHHHHHHHh-------CCeee
Q 006122 54 YRTAILYLVETHA--TTIIVGETGSGKTTQIPQYLKEAGWADGGRVIACTQPRRLAVQAVASRVAEEM-------GVKVG 124 (660)
Q Consensus 54 ~~~~i~~~l~~~~--~vii~apTGsGKT~~ip~~l~~~~~~~~~~~i~v~p~r~la~~~~~~~~~~~~-------~~~~~ 124 (660)
+|.+.++++.+++ +++++||||||||...-..++. ...++++++|+++|+.++..+ +.+.. +..+.
T Consensus 1 hQ~~~~~~~~~~~~~~~~i~apTGsGKT~~~~~~~l~----~~~~~~~~~P~~aL~~~~~~~-~~~~~~~~~~~~~~~v~ 75 (357)
T TIGR03158 1 HQVATFEALQSKDADIIFNTAPTGAGKTLAWLTPLLH----GENDTIALYPTNALIEDQTEA-IKEFVDVFKPERDVNLL 75 (357)
T ss_pred CHHHHHHHHHcCCCCEEEEECCCCCCHHHHHHHHHHH----cCCCEEEEeChHHHHHHHHHH-HHHHHHhcCCCCCceEE
Confidence 4778888887765 5899999999999443222222 234679999999998875432 22222 33444
Q ss_pred eEEeeeeec----c----c-------------cCCCCCceEEEechHHHHHHHhc---CC------CCCCCcEEEEeCCC
Q 006122 125 EEVGYTIRF----E----D-------------FTNKDLTAIKFLTDGVLLREMMD---DP------LLTKYSVIMVDEAH 174 (660)
Q Consensus 125 ~~vg~~~~~----~----~-------------~~~~~~~~I~v~T~~~ll~~l~~---~~------~l~~~~~iIiDE~H 174 (660)
...|..... . . ......+.|+++||+++...+.. .+ .+.++++||+||+|
T Consensus 76 ~~~g~~~~d~~~~~~~~~~~~~g~~~~~~~r~~~~~~~p~illT~p~~l~~llr~~~~~~~~~~~~~~~~~~~iV~DE~H 155 (357)
T TIGR03158 76 HVSKATLKDIKEYANDKVGSSKGEKLYNLLRNPIGTSTPIILLTNPDIFVYLTRFAYIDRGDIAAGFYTKFSTVIFDEFH 155 (357)
T ss_pred EecCCchHHHHHhhhhhcccCccchhhhhHHHHHhcCCCCEEEecHHHHHHHHhhhccCcccchhhhhcCCCEEEEeccc
Confidence 444421100 0 0 00111467888889888765432 11 25889999999999
Q ss_pred cCCcChh-HHH---HHHHHHHHhcCCceEEEeecccchHHHHHHhhcCCCCCCCcccccCCCCCCeEEEECCc--c----
Q 006122 175 ERSISTD-ILL---GLLKKIQRCRSDLRLIISSATIEAKSMSAFFHARKGRRGLEGVELVPRLEPAILSVEGR--G---- 244 (660)
Q Consensus 175 er~~~~d-~ll---~~l~~~~~~~~~~kii~~SAT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~---- 244 (660)
..+.... .++ .....+.......++++||||++.. +.+++...... ..++..++|+ .
T Consensus 156 ~~~~~~~~~~~~~l~~~~~~~~~~~~~~~i~lSAT~~~~-~~~~l~~~~~~------------~~~~~~v~g~~~~~~~~ 222 (357)
T TIGR03158 156 LYDAKQLVGMLFLLAYMQLIRFFECRRKFVFLSATPDPA-LILRLQNAKQA------------GVKIAPIDGEKYQFPDN 222 (357)
T ss_pred ccCcccchhhhhhhHHHHHHHhhhcCCcEEEEecCCCHH-HHHHHHhcccc------------CceeeeecCcccccCCC
Confidence 7664332 222 3333333333357999999999764 33333322000 0002222222 0
Q ss_pred ----------------ccceEEecCCC--chhHHHHHHHHHHHHHhcCCCCcEEEEcCCHHHHHHHHHHHHHHhhhccCC
Q 006122 245 ----------------FNVQIHYVEEP--VSDYVQAAVSTVLLIHDKEPPGDILVFLTGQDDIDATIQLLTEEARTSKKN 306 (660)
Q Consensus 245 ----------------~~v~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~iLVF~~~~~~i~~l~~~L~~~~~~~~~~ 306 (660)
-+++..+.... ..+.+......+........++++||||+++++++.+++.|.+..
T Consensus 223 ~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~l~~l~~~i~~~~~~~~~~k~LIf~nt~~~~~~l~~~L~~~~------ 296 (357)
T TIGR03158 223 PELEADNKTQSFRPVLPPVELELIPAPDFKEEELSELAEEVIERFRQLPGERGAIILDSLDEVNRLSDLLQQQG------ 296 (357)
T ss_pred hhhhccccccccceeccceEEEEEeCCchhHHHHHHHHHHHHHHHhccCCCeEEEEECCHHHHHHHHHHHhhhC------
Confidence 13333333211 122233333444444444466789999999999999999998641
Q ss_pred CCCeEEEEccCCCCHHHHhhhcCCCCCCCcEEEEeCCCcccccCCCCeEEEEeCCCccceeecCCCCcccceeeecCHHh
Q 006122 307 SSGLIILPLYSGLSRAEQEQVFSPTPRGKRKVVISTNIAETSLTLEGIVYVVDSGFSKQRFYNPISDIENLVVAPISKAS 386 (660)
Q Consensus 307 ~~~~~v~~lh~~l~~~~r~~v~~~f~~g~~~vlvaT~i~e~Gidip~v~~VId~g~~k~~~~~~~~~~~~l~~~~~s~~~ 386 (660)
.++.+..+||.+++.+|.++. +.+|+|||+++++|||+|.+.+|++ |.+..+
T Consensus 297 -~~~~~~~l~g~~~~~~R~~~~------~~~iLVaTdv~~rGiDi~~~~vi~~---------------------p~~~~~ 348 (357)
T TIGR03158 297 -LGDDIGRITGFAPKKDRERAM------QFDILLGTSTVDVGVDFKRDWLIFS---------------------ARDAAA 348 (357)
T ss_pred -CCceEEeeecCCCHHHHHHhc------cCCEEEEecHHhcccCCCCceEEEC---------------------CCCHHH
Confidence 145788999999999987653 6789999999999999998743332 667889
Q ss_pred HHHhhcccC
Q 006122 387 ARQRAGRAG 395 (660)
Q Consensus 387 ~~QR~GRaG 395 (660)
|+||+||+|
T Consensus 349 yiqR~GR~g 357 (357)
T TIGR03158 349 FWQRLGRLG 357 (357)
T ss_pred HhhhcccCC
Confidence 999999998
No 71
>COG1205 Distinct helicase family with a unique C-terminal domain including a metal-binding cysteine cluster [General function prediction only]
Probab=99.96 E-value=2.2e-28 Score=278.69 Aligned_cols=329 Identities=21% Similarity=0.237 Sum_probs=228.6
Q ss_pred HHhcCCCcHHHHHHHHHHHhcCCEEEEEcCCCCcHH--HHHHHHHHhccccCCCeEEEEeCchHHHHHHHHHH--HHHHh
Q 006122 44 KQRQRLPVYKYRTAILYLVETHATTIIVGETGSGKT--TQIPQYLKEAGWADGGRVIACTQPRRLAVQAVASR--VAEEM 119 (660)
Q Consensus 44 ~~~~~lPi~~~~~~i~~~l~~~~~vii~apTGsGKT--~~ip~~l~~~~~~~~~~~i~v~p~r~la~~~~~~~--~~~~~ 119 (660)
..+....+|.||.+.++.+.+++++||+.+|||||| |++|.+-.-. ..+..+++++.|+++|+..|+.+. +....
T Consensus 64 ~~~g~~~lY~HQ~~A~~~~~~G~~vvVtTgTgSGKTe~FllPIld~~l-~~~~a~AL~lYPtnALa~DQ~~rl~~~~~~~ 142 (851)
T COG1205 64 VKAGIERLYSHQVDALRLIREGRNVVVTTGTGSGKTESFLLPILDHLL-RDPSARALLLYPTNALANDQAERLRELISDL 142 (851)
T ss_pred HHhccccccHHHHHHHHHHHCCCCEEEECCCCCchhHHHHHHHHHHHh-hCcCccEEEEechhhhHhhHHHHHHHHHHhC
Confidence 334455699999999999999999999999999999 7788654332 234457899999999998866442 33344
Q ss_pred C--CeeeeEEeeeeecccc-CCCCCceEEEechHHHHHHHhcCC-----CCCCCcEEEEeCCC-cCCcChhHHHHHHHHH
Q 006122 120 G--VKVGEEVGYTIRFEDF-TNKDLTAIKFLTDGVLLREMMDDP-----LLTKYSVIMVDEAH-ERSISTDILLGLLKKI 190 (660)
Q Consensus 120 ~--~~~~~~vg~~~~~~~~-~~~~~~~I~v~T~~~ll~~l~~~~-----~l~~~~~iIiDE~H-er~~~~d~ll~~l~~~ 190 (660)
+ +..+...|.....+.. .....++|++++|.||...++... .++++++||+||+| -|+....-+..+++++
T Consensus 143 ~~~v~~~~y~Gdt~~~~r~~~~~~pp~IllTNpdMLh~~llr~~~~~~~~~~~Lk~lVvDElHtYrGv~GS~vA~llRRL 222 (851)
T COG1205 143 PGKVTFGRYTGDTPPEERRAIIRNPPDILLTNPDMLHYLLLRNHDAWLWLLRNLKYLVVDELHTYRGVQGSEVALLLRRL 222 (851)
T ss_pred CCcceeeeecCCCChHHHHHHHhCCCCEEEeCHHHHHHHhccCcchHHHHHhcCcEEEEecceeccccchhHHHHHHHHH
Confidence 4 4555566644333331 112269999999999988664432 27889999999999 4566665566666665
Q ss_pred HHh----cCCceEEEeeccc-chHHHH-HHhhcCCCCCCCcccccCCCCCCeEEEECCccccceEEecCCC---------
Q 006122 191 QRC----RSDLRLIISSATI-EAKSMS-AFFHARKGRRGLEGVELVPRLEPAILSVEGRGFNVQIHYVEEP--------- 255 (660)
Q Consensus 191 ~~~----~~~~kii~~SAT~-~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~--------- 255 (660)
... ..++++|.+|||+ ++..+. ++++..-.. .+.-.+.......+....+
T Consensus 223 ~~~~~~~~~~~q~i~~SAT~~np~e~~~~l~~~~f~~---------------~v~~~g~~~~~~~~~~~~p~~~~~~~~~ 287 (851)
T COG1205 223 LRRLRRYGSPLQIICTSATLANPGEFAEELFGRDFEV---------------PVDEDGSPRGLRYFVRREPPIRELAESI 287 (851)
T ss_pred HHHHhccCCCceEEEEeccccChHHHHHHhcCCccee---------------eccCCCCCCCceEEEEeCCcchhhhhhc
Confidence 543 3479999999999 655554 555443210 0111122222222222222
Q ss_pred chhHHHHHHHHHHHHHhcCCCCcEEEEcCCHHHHHHHHHHHHHHhhhccCCCCCeEEEEccCCCCHHHHhhhcCCCCCCC
Q 006122 256 VSDYVQAAVSTVLLIHDKEPPGDILVFLTGQDDIDATIQLLTEEARTSKKNSSGLIILPLYSGLSRAEQEQVFSPTPRGK 335 (660)
Q Consensus 256 ~~~~~~~~~~~~~~~~~~~~~~~iLVF~~~~~~i~~l~~~L~~~~~~~~~~~~~~~v~~lh~~l~~~~r~~v~~~f~~g~ 335 (660)
..+........+.... ..+-++|+|+.++..++.++....+.....+ ......+..++|++..++|.+++..|++|+
T Consensus 288 r~s~~~~~~~~~~~~~--~~~~~tL~F~~sr~~~e~~~~~~~~~~~~~~-~~l~~~v~~~~~~~~~~er~~ie~~~~~g~ 364 (851)
T COG1205 288 RRSALAELATLAALLV--RNGIQTLVFFRSRKQVELLYLSPRRRLVREG-GKLLDAVSTYRAGLHREERRRIEAEFKEGE 364 (851)
T ss_pred ccchHHHHHHHHHHHH--HcCceEEEEEehhhhhhhhhhchhHHHhhcc-hhhhhheeeccccCCHHHHHHHHHHHhcCC
Confidence 0111111111111111 3456799999999999999866666554433 333467999999999999999999999999
Q ss_pred cEEEEeCCCcccccCCCCeEEEEeCCCccceeecCCCCcccceeeec-CHHhHHHhhcccCCC-CCcEEEEccChH
Q 006122 336 RKVVISTNIAETSLTLEGIVYVVDSGFSKQRFYNPISDIENLVVAPI-SKASARQRAGRAGRV-RPGKCYRLYTEE 409 (660)
Q Consensus 336 ~~vlvaT~i~e~Gidip~v~~VId~g~~k~~~~~~~~~~~~l~~~~~-s~~~~~QR~GRaGR~-~~G~~~~l~~~~ 409 (660)
.+++++||.+|.|+||.+++.||..|+ |. |..+++||+|||||. +.+..+..+..+
T Consensus 365 ~~~~~st~AlelgidiG~ldavi~~g~------------------P~~s~~~~~Q~~GRaGR~~~~~l~~~v~~~~ 422 (851)
T COG1205 365 LLGVIATNALELGIDIGSLDAVIAYGY------------------PGVSVLSFRQRAGRAGRRGQESLVLVVLRSD 422 (851)
T ss_pred ccEEecchhhhhceeehhhhhHhhcCC------------------CCchHHHHHHhhhhccCCCCCceEEEEeCCC
Confidence 999999999999999999999999998 77 899999999999998 466555555443
No 72
>KOG0334 consensus RNA helicase [RNA processing and modification]
Probab=99.96 E-value=5.1e-29 Score=274.17 Aligned_cols=334 Identities=19% Similarity=0.247 Sum_probs=252.5
Q ss_pred cCCCCCCCccchHhHHHHhcCCCcHHHHHHHHHHHhcCCEEEEEcCCCCcHH--HHHHHHHHhccc-----cCCCeEEEE
Q 006122 28 SLSSASSIGYGYASIEKQRQRLPVYKYRTAILYLVETHATTIIVGETGSGKT--TQIPQYLKEAGW-----ADGGRVIAC 100 (660)
Q Consensus 28 ~~~~~~~~~~~~~~~~~~~~~lPi~~~~~~i~~~l~~~~~vii~apTGsGKT--~~ip~~l~~~~~-----~~~~~~i~v 100 (660)
+|...+++......+.+.... +..+.|.+.+.+|..++.||.+|.|||||| |++|.+-..... .+++-.|++
T Consensus 366 sW~q~gl~~~il~tlkkl~y~-k~~~IQ~qAiP~ImsGrdvIgvakTgSGKT~af~LPmirhi~dQr~~~~gdGPi~li~ 444 (997)
T KOG0334|consen 366 SWTQCGLSSKILETLKKLGYE-KPTPIQAQAIPAIMSGRDVIGVAKTGSGKTLAFLLPMIRHIKDQRPLEEGDGPIALIL 444 (997)
T ss_pred hHhhCCchHHHHHHHHHhcCC-CCcchhhhhcchhccCcceEEeeccCCccchhhhcchhhhhhcCCChhhCCCceEEEE
Confidence 589999999888777554444 555566777888889999999999999999 778887544322 234567999
Q ss_pred eCchHHHHH--HHHHHHHHHhCCeeeeEEeeeeecccc--CCCCCceEEEechHHHHHHHhcCC--C--CCCCcEEEEeC
Q 006122 101 TQPRRLAVQ--AVASRVAEEMGVKVGEEVGYTIRFEDF--TNKDLTAIKFLTDGVLLREMMDDP--L--LTKYSVIMVDE 172 (660)
Q Consensus 101 ~p~r~la~~--~~~~~~~~~~~~~~~~~vg~~~~~~~~--~~~~~~~I~v~T~~~ll~~l~~~~--~--l~~~~~iIiDE 172 (660)
+|+|+++.| ...+.+.+..++.+...+|..-.-+.. ... .+.|+|||||+.+..+..+. . +.++.++|+||
T Consensus 445 aPtrela~QI~r~~~kf~k~l~ir~v~vygg~~~~~qiaelkR-g~eIvV~tpGRmiD~l~~n~grvtnlrR~t~lv~de 523 (997)
T KOG0334|consen 445 APTRELAMQIHREVRKFLKLLGIRVVCVYGGSGISQQIAELKR-GAEIVVCTPGRMIDILCANSGRVTNLRRVTYLVLDE 523 (997)
T ss_pred cCCHHHHHHHHHHHHHHHhhcCceEEEecCCccHHHHHHHHhc-CCceEEeccchhhhhHhhcCCccccccccceeeech
Confidence 999999999 667778888888888888743221111 123 58999999999999875432 2 66777999999
Q ss_pred CCcCCcChhHHHHHHHHHHHhcCCceEEEeecccch--HHHHHHhhcCCCCCCCcccccCCCCCCeEEEECCcc---ccc
Q 006122 173 AHERSISTDILLGLLKKIQRCRSDLRLIISSATIEA--KSMSAFFHARKGRRGLEGVELVPRLEPAILSVEGRG---FNV 247 (660)
Q Consensus 173 ~Her~~~~d~ll~~l~~~~~~~~~~kii~~SAT~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~v 247 (660)
++ |..+..|.....+.+...+++.|.+++|||.+. +.++.-....|+ -+.+.++. ..|
T Consensus 524 aD-rmfdmgfePq~~~Ii~nlrpdrQtvlfSatfpr~m~~la~~vl~~Pv----------------eiiv~~~svV~k~V 586 (997)
T KOG0334|consen 524 AD-RMFDMGFEPQITRILQNLRPDRQTVLFSATFPRSMEALARKVLKKPV----------------EIIVGGRSVVCKEV 586 (997)
T ss_pred hh-hhheeccCcccchHHhhcchhhhhhhhhhhhhHHHHHHHHHhhcCCe----------------eEEEccceeEeccc
Confidence 99 888888888888877788999999999999944 444443333331 12222332 223
Q ss_pred eEEecCCC-chhHHHHHHHHHHHHHhcCCCCcEEEEcCCHHHHHHHHHHHHHHhhhccCCCCCeEEEEccCCCCHHHHhh
Q 006122 248 QIHYVEEP-VSDYVQAAVSTVLLIHDKEPPGDILVFLTGQDDIDATIQLLTEEARTSKKNSSGLIILPLYSGLSRAEQEQ 326 (660)
Q Consensus 248 ~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~iLVF~~~~~~i~~l~~~L~~~~~~~~~~~~~~~v~~lh~~l~~~~r~~ 326 (660)
+..+...+ ..+........+ ......+++||||...+.+..+.+.|.+. ++....+||+.++.+|..
T Consensus 587 ~q~v~V~~~e~eKf~kL~eLl---~e~~e~~~tiiFv~~qe~~d~l~~~L~~a---------g~~~~slHGgv~q~dR~s 654 (997)
T KOG0334|consen 587 TQVVRVCAIENEKFLKLLELL---GERYEDGKTIIFVDKQEKADALLRDLQKA---------GYNCDSLHGGVDQHDRSS 654 (997)
T ss_pred eEEEEEecCchHHHHHHHHHH---HHHhhcCCEEEEEcCchHHHHHHHHHHhc---------CcchhhhcCCCchHHHHh
Confidence 33333333 222222222222 22234788999999999999999999865 788888999999999999
Q ss_pred hcCCCCCCCcEEEEeCCCcccccCCCCeEEEEeCCCccceeecCCCCcccceeeecCHHhHHHhhcccCCC-CCcEEEEc
Q 006122 327 VFSPTPRGKRKVVISTNIAETSLTLEGIVYVVDSGFSKQRFYNPISDIENLVVAPISKASARQRAGRAGRV-RPGKCYRL 405 (660)
Q Consensus 327 v~~~f~~g~~~vlvaT~i~e~Gidip~v~~VId~g~~k~~~~~~~~~~~~l~~~~~s~~~~~QR~GRaGR~-~~G~~~~l 405 (660)
+++.|++|..++++||+++++|+|++++..||++++ |--.+.|.||.||+||+ +.|.||.+
T Consensus 655 ti~dfK~~~~~LLvaTsvvarGLdv~~l~Lvvnyd~------------------pnh~edyvhR~gRTgragrkg~AvtF 716 (997)
T KOG0334|consen 655 TIEDFKNGVVNLLVATSVVARGLDVKELILVVNYDF------------------PNHYEDYVHRVGRTGRAGRKGAAVTF 716 (997)
T ss_pred HHHHHhccCceEEEehhhhhcccccccceEEEEccc------------------chhHHHHHHHhcccccCCccceeEEE
Confidence 999999999999999999999999999999999666 55566788999999999 88999999
Q ss_pred cChHH
Q 006122 406 YTEEY 410 (660)
Q Consensus 406 ~~~~~ 410 (660)
+++++
T Consensus 717 i~p~q 721 (997)
T KOG0334|consen 717 ITPDQ 721 (997)
T ss_pred eChHH
Confidence 99853
No 73
>KOG0344 consensus ATP-dependent RNA helicase [RNA processing and modification]
Probab=99.96 E-value=8.5e-29 Score=256.77 Aligned_cols=322 Identities=19% Similarity=0.237 Sum_probs=221.5
Q ss_pred HhHHHHhcCCCcHHHHHHHHHHHhcCCEEEEEcCCCCcHH--HHHHHHHHhcccc-----CCCeEEEEeCchHHHHHHHH
Q 006122 40 ASIEKQRQRLPVYKYRTAILYLVETHATTIIVGETGSGKT--TQIPQYLKEAGWA-----DGGRVIACTQPRRLAVQAVA 112 (660)
Q Consensus 40 ~~~~~~~~~lPi~~~~~~i~~~l~~~~~vii~apTGsGKT--~~ip~~l~~~~~~-----~~~~~i~v~p~r~la~~~~~ 112 (660)
.++......-|...+.. .+..+..+.+++.+|||||||| +.+|.+..-.... .+-+++++.|+|.|++|...
T Consensus 149 ~nl~~~~F~~Pt~iq~~-aipvfl~~r~~lAcapTGsgKtlaf~~Pil~~L~~~~~~~~~~gl~a~Il~ptreLa~Qi~r 227 (593)
T KOG0344|consen 149 ENLQELGFDEPTPIQKQ-AIPVFLEKRDVLACAPTGSGKTLAFNLPILQHLKDLSQEKHKVGLRALILSPTRELAAQIYR 227 (593)
T ss_pred HhHhhCCCCCCCcccch-hhhhhhcccceEEeccCCCcchhhhhhHHHHHHHHhhcccCccceEEEEecchHHHHHHHHH
Confidence 34555556667776664 4555667788999999999999 7788654432222 23457999999999998544
Q ss_pred HHHHHHhC------CeeeeEEe--eeeeccccCCCCCceEEEechHHHHHHHhcCC---CCCCCcEEEEeCCCcCCcChh
Q 006122 113 SRVAEEMG------VKVGEEVG--YTIRFEDFTNKDLTAIKFLTDGVLLREMMDDP---LLTKYSVIMVDEAHERSISTD 181 (660)
Q Consensus 113 ~~~~~~~~------~~~~~~vg--~~~~~~~~~~~~~~~I~v~T~~~ll~~l~~~~---~l~~~~~iIiDE~Her~~~~d 181 (660)
+. .++. ........ +...-....+....+|++.||-.+...+...+ .+.++.++|+||++ +...-.
T Consensus 228 e~--~k~~~~~~t~~~a~~~~~~~~~~qk~a~~~~~k~dili~TP~ri~~~~~~~~~~idl~~V~~lV~dEaD-~lfe~~ 304 (593)
T KOG0344|consen 228 EM--RKYSIDEGTSLRAAQFSKPAYPSQKPAFLSDEKYDILISTPMRIVGLLGLGKLNIDLSKVEWLVVDEAD-LLFEPE 304 (593)
T ss_pred HH--HhcCCCCCCchhhhhcccccchhhccchhHHHHHHHHhcCHHHHHHHhcCCCccchhheeeeEeechHH-hhhChh
Confidence 42 2222 11111111 11110011112267899999999999887765 49999999999999 444442
Q ss_pred HHHHHHHHHHH--hcCCceEEEeeccc--chHHHHHHhhcCCCCCCCcccccCCCCCCeEEEECCcc---ccce--EEec
Q 006122 182 ILLGLLKKIQR--CRSDLRLIISSATI--EAKSMSAFFHARKGRRGLEGVELVPRLEPAILSVEGRG---FNVQ--IHYV 252 (660)
Q Consensus 182 ~ll~~l~~~~~--~~~~~kii~~SAT~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~v~--~~~~ 252 (660)
.+...+..+.. ..+++++=++|||. .++.++......+. .+.+..+. ..|+ ..|.
T Consensus 305 ~f~~Qla~I~sac~s~~i~~a~FSat~~~~VEE~~~~i~~~~~----------------~vivg~~~sa~~~V~QelvF~ 368 (593)
T KOG0344|consen 305 FFVEQLADIYSACQSPDIRVALFSATISVYVEEWAELIKSDLK----------------RVIVGLRNSANETVDQELVFC 368 (593)
T ss_pred hHHHHHHHHHHHhcCcchhhhhhhccccHHHHHHHHHhhccce----------------eEEEecchhHhhhhhhhheee
Confidence 33333333332 34788899999998 45555554443331 11111110 1111 1121
Q ss_pred CCCchhHHHHHHHHHHHHHhcCCCCcEEEEcCCHHHHHHHHHHHHHHhhhccCCCCCeEEEEccCCCCHHHHhhhcCCCC
Q 006122 253 EEPVSDYVQAAVSTVLLIHDKEPPGDILVFLTGQDDIDATIQLLTEEARTSKKNSSGLIILPLYSGLSRAEQEQVFSPTP 332 (660)
Q Consensus 253 ~~~~~~~~~~~~~~~~~~~~~~~~~~iLVF~~~~~~i~~l~~~L~~~~~~~~~~~~~~~v~~lh~~l~~~~r~~v~~~f~ 332 (660)
..... .+-.+.++....-..++|||+.+.+.+..+...|.. .+++.|..+||..++.+|..+++.|+
T Consensus 369 gse~~-----K~lA~rq~v~~g~~PP~lIfVQs~eRak~L~~~L~~--------~~~i~v~vIh~e~~~~qrde~~~~FR 435 (593)
T KOG0344|consen 369 GSEKG-----KLLALRQLVASGFKPPVLIFVQSKERAKQLFEELEI--------YDNINVDVIHGERSQKQRDETMERFR 435 (593)
T ss_pred ecchh-----HHHHHHHHHhccCCCCeEEEEecHHHHHHHHHHhhh--------ccCcceeeEecccchhHHHHHHHHHh
Confidence 11111 122333444445667899999999999999998852 24889999999999999999999999
Q ss_pred CCCcEEEEeCCCcccccCCCCeEEEEeCCCccceeecCCCCcccceeeecCHHhHHHhhcccCCC-CCcEEEEccChHHh
Q 006122 333 RGKRKVVISTNIAETSLTLEGIVYVVDSGFSKQRFYNPISDIENLVVAPISKASARQRAGRAGRV-RPGKCYRLYTEEYF 411 (660)
Q Consensus 333 ~g~~~vlvaT~i~e~Gidip~v~~VId~g~~k~~~~~~~~~~~~l~~~~~s~~~~~QR~GRaGR~-~~G~~~~l~~~~~~ 411 (660)
.|++.|++||+++++|+|+-+++.||++++ |.|..+|.||+||+||. +.|++|.+|++++.
T Consensus 436 ~g~IwvLicTdll~RGiDf~gvn~VInyD~------------------p~s~~syihrIGRtgRag~~g~Aitfytd~d~ 497 (593)
T KOG0344|consen 436 IGKIWVLICTDLLARGIDFKGVNLVINYDF------------------PQSDLSYIHRIGRTGRAGRSGKAITFYTDQDM 497 (593)
T ss_pred ccCeeEEEehhhhhccccccCcceEEecCC------------------CchhHHHHHHhhccCCCCCCcceEEEeccccc
Confidence 999999999999999999999999999888 88999999999999999 89999999999664
Q ss_pred h
Q 006122 412 V 412 (660)
Q Consensus 412 ~ 412 (660)
.
T Consensus 498 ~ 498 (593)
T KOG0344|consen 498 P 498 (593)
T ss_pred h
Confidence 4
No 74
>PRK13766 Hef nuclease; Provisional
Probab=99.96 E-value=2.8e-27 Score=275.15 Aligned_cols=333 Identities=19% Similarity=0.228 Sum_probs=209.7
Q ss_pred CCCcHHHHHHHHHHHhcCCEEEEEcCCCCcHHHHHHHHHHhccccCCCeEEEEeCchHHHHHHHHHHHHHHhCC---eee
Q 006122 48 RLPVYKYRTAILYLVETHATTIIVGETGSGKTTQIPQYLKEAGWADGGRVIACTQPRRLAVQAVASRVAEEMGV---KVG 124 (660)
Q Consensus 48 ~lPi~~~~~~i~~~l~~~~~vii~apTGsGKT~~ip~~l~~~~~~~~~~~i~v~p~r~la~~~~~~~~~~~~~~---~~~ 124 (660)
.+....+|.++...+..+ +++|++|||+|||.+....+.......++++++++|++.|+.|. .+.+.+.++. .+.
T Consensus 13 ~~~~r~yQ~~~~~~~l~~-n~lv~~ptG~GKT~~a~~~i~~~l~~~~~~vLvl~Pt~~L~~Q~-~~~~~~~~~~~~~~v~ 90 (773)
T PRK13766 13 TIEARLYQQLLAATALKK-NTLVVLPTGLGKTAIALLVIAERLHKKGGKVLILAPTKPLVEQH-AEFFRKFLNIPEEKIV 90 (773)
T ss_pred cCCccHHHHHHHHHHhcC-CeEEEcCCCccHHHHHHHHHHHHHHhCCCeEEEEeCcHHHHHHH-HHHHHHHhCCCCceEE
Confidence 456678888888777666 68999999999996544333333233567889999999888764 4455555554 444
Q ss_pred eEEeeeeeccccCCCCCceEEEechHHHHHHHhcCCC-CCCCcEEEEeCCCcCCcChhHHHHHHHHHHHhcCCceEEEee
Q 006122 125 EEVGYTIRFEDFTNKDLTAIKFLTDGVLLREMMDDPL-LTKYSVIMVDEAHERSISTDILLGLLKKIQRCRSDLRLIISS 203 (660)
Q Consensus 125 ~~vg~~~~~~~~~~~~~~~I~v~T~~~ll~~l~~~~~-l~~~~~iIiDE~Her~~~~d~ll~~l~~~~~~~~~~kii~~S 203 (660)
...|.....+........+|+|+||+.+...+..... +.++++||+|||| +.........+.+......+..++++||
T Consensus 91 ~~~g~~~~~~r~~~~~~~~iiv~T~~~l~~~l~~~~~~~~~~~liVvDEaH-~~~~~~~~~~i~~~~~~~~~~~~il~lT 169 (773)
T PRK13766 91 VFTGEVSPEKRAELWEKAKVIVATPQVIENDLIAGRISLEDVSLLIFDEAH-RAVGNYAYVYIAERYHEDAKNPLVLGLT 169 (773)
T ss_pred EEeCCCCHHHHHHHHhCCCEEEECHHHHHHHHHcCCCChhhCcEEEEECCc-cccccccHHHHHHHHHhcCCCCEEEEEE
Confidence 4444221111111112578999999999888766554 8899999999999 4433333333445555555667899999
Q ss_pred ccc--chHHHHHHhhcCCCCCCC---cccc----cCCCCCCeEEEEC--Cc------------------------cccce
Q 006122 204 ATI--EAKSMSAFFHARKGRRGL---EGVE----LVPRLEPAILSVE--GR------------------------GFNVQ 248 (660)
Q Consensus 204 AT~--~~~~~~~~~~~~~~~~~~---~~~~----~~~~~~~~~~~~~--~~------------------------~~~v~ 248 (660)
||+ +.+.+...+.+....... ...+ .........+.++ .. ..+..
T Consensus 170 aTP~~~~~~i~~~~~~L~i~~v~~~~~~~~~v~~~~~~~~v~~~~v~l~~~~~~i~~~l~~~~~~~l~~l~~~~~~~~~~ 249 (773)
T PRK13766 170 ASPGSDEEKIKEVCENLGIEHVEVRTEDDPDVKPYVHKVKIEWVRVELPEELKEIRDLLNEALKDRLKKLKELGVIVSIS 249 (773)
T ss_pred cCCCCCHHHHHHHHHhCCceEEEEcCCCChhHHhhhccceeEEEEeCCcHHHHHHHHHHHHHHHHHHHHHHHCCCcccCC
Confidence 998 444444444332110000 0000 0000000000000 00 00000
Q ss_pred ----E------------EecCCCc------------------------------hhH-----------------------
Q 006122 249 ----I------------HYVEEPV------------------------------SDY----------------------- 259 (660)
Q Consensus 249 ----~------------~~~~~~~------------------------------~~~----------------------- 259 (660)
. ....... ..|
T Consensus 250 ~~~~~~~l~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~~~~~~~~y~~~l~~~~~~~~~~~~~~~l~~~ 329 (773)
T PRK13766 250 PDVSKKELLGLQKKLQQEIANDDSEGYEAISILAEAMKLRHAVELLETQGVEALRRYLERLREEARSSGGSKASKRLVED 329 (773)
T ss_pred CCcCHHHHHHHHHHHHHHhhcCchHHHHHHHHHHHHHHHHHHHHHHHHhCHHHHHHHHHHHHhhccccCCcHHHHHHHhC
Confidence 0 0000000 000
Q ss_pred -------------------HHHHHHHHHHHHhcCCCCcEEEEcCCHHHHHHHHHHHHHHhhhccCCCCCeEEEEccCC--
Q 006122 260 -------------------VQAAVSTVLLIHDKEPPGDILVFLTGQDDIDATIQLLTEEARTSKKNSSGLIILPLYSG-- 318 (660)
Q Consensus 260 -------------------~~~~~~~~~~~~~~~~~~~iLVF~~~~~~i~~l~~~L~~~~~~~~~~~~~~~v~~lh~~-- 318 (660)
.+.....+..+.....++++||||++++.++.+++.|... ++.+..+||.
T Consensus 330 ~~~~~~~~~~~~~~~~~pK~~~L~~il~~~~~~~~~~kvlIF~~~~~t~~~L~~~L~~~---------~~~~~~~~g~~~ 400 (773)
T PRK13766 330 PRFRKAVRKAKELDIEHPKLEKLREIVKEQLGKNPDSRIIVFTQYRDTAEKIVDLLEKE---------GIKAVRFVGQAS 400 (773)
T ss_pred HHHHHHHHHHHhcccCChHHHHHHHHHHHHHhcCCCCeEEEEeCcHHHHHHHHHHHHhC---------CCceEEEEcccc
Confidence 0000111111112246788999999999999999999654 5556666664
Q ss_pred ------CCHHHHhhhcCCCCCCCcEEEEeCCCcccccCCCCeEEEEeCCCccceeecCCCCcccceeeecCHHhHHHhhc
Q 006122 319 ------LSRAEQEQVFSPTPRGKRKVVISTNIAETSLTLEGIVYVVDSGFSKQRFYNPISDIENLVVAPISKASARQRAG 392 (660)
Q Consensus 319 ------l~~~~r~~v~~~f~~g~~~vlvaT~i~e~Gidip~v~~VId~g~~k~~~~~~~~~~~~l~~~~~s~~~~~QR~G 392 (660)
+++.+|..+++.|++|..+|||||+++++|+|+|++++||+++. +.+...+.||+|
T Consensus 401 ~~~~~~~~~~~r~~~~~~F~~g~~~vLvaT~~~~eGldi~~~~~VI~yd~------------------~~s~~r~iQR~G 462 (773)
T PRK13766 401 KDGDKGMSQKEQIEILDKFRAGEFNVLVSTSVAEEGLDIPSVDLVIFYEP------------------VPSEIRSIQRKG 462 (773)
T ss_pred ccccCCCCHHHHHHHHHHHHcCCCCEEEECChhhcCCCcccCCEEEEeCC------------------CCCHHHHHHHhc
Confidence 99999999999999999999999999999999999999998554 667888999999
Q ss_pred ccCCCCCcEEEEccChHH
Q 006122 393 RAGRVRPGKCYRLYTEEY 410 (660)
Q Consensus 393 RaGR~~~G~~~~l~~~~~ 410 (660)
|+||.++|.+|.|+.++.
T Consensus 463 R~gR~~~~~v~~l~~~~t 480 (773)
T PRK13766 463 RTGRQEEGRVVVLIAKGT 480 (773)
T ss_pred ccCcCCCCEEEEEEeCCC
Confidence 999999999999997544
No 75
>PHA02558 uvsW UvsW helicase; Provisional
Probab=99.96 E-value=3.1e-27 Score=259.54 Aligned_cols=310 Identities=13% Similarity=0.063 Sum_probs=189.3
Q ss_pred CCcHHHHHHHHHHHhcCCEEEEEcCCCCcHHHHHHHHHHhccccCCCeEEEEeCchHHHHHHHHHHHHHHhCC---eeee
Q 006122 49 LPVYKYRTAILYLVETHATTIIVGETGSGKTTQIPQYLKEAGWADGGRVIACTQPRRLAVQAVASRVAEEMGV---KVGE 125 (660)
Q Consensus 49 lPi~~~~~~i~~~l~~~~~vii~apTGsGKT~~ip~~l~~~~~~~~~~~i~v~p~r~la~~~~~~~~~~~~~~---~~~~ 125 (660)
.....+|.+.+..+..++..++++|||+|||..+..++.........++++++|+++|+.|. .+++.+.... .++.
T Consensus 113 ~~~r~~Q~~av~~~l~~~~~il~apTGsGKT~i~~~l~~~~~~~~~~~vLilvpt~eL~~Q~-~~~l~~~~~~~~~~~~~ 191 (501)
T PHA02558 113 IEPHWYQYDAVYEGLKNNRRLLNLPTSAGKSLIQYLLSRYYLENYEGKVLIIVPTTSLVTQM-IDDFVDYRLFPREAMHK 191 (501)
T ss_pred CCCCHHHHHHHHHHHhcCceEEEeCCCCCHHHHHHHHHHHHHhcCCCeEEEEECcHHHHHHH-HHHHHHhccccccceeE
Confidence 46677788777777777778999999999996655443221112234789999999988764 3444443321 1222
Q ss_pred EEeeeeeccccCCCCCceEEEechHHHHHHHhcCCCCCCCcEEEEeCCCcCCcChhHHHHHHHHHHHhcCCceEEEeecc
Q 006122 126 EVGYTIRFEDFTNKDLTAIKFLTDGVLLREMMDDPLLTKYSVIMVDEAHERSISTDILLGLLKKIQRCRSDLRLIISSAT 205 (660)
Q Consensus 126 ~vg~~~~~~~~~~~~~~~I~v~T~~~ll~~l~~~~~l~~~~~iIiDE~Her~~~~d~ll~~l~~~~~~~~~~kii~~SAT 205 (660)
..|.. .... ..+|+|+|++.+.+.. ...+.++++||+||||. .... .+..+++. ..+..+++++|||
T Consensus 192 i~~g~-----~~~~-~~~I~VaT~qsl~~~~--~~~~~~~~~iIvDEaH~-~~~~-~~~~il~~---~~~~~~~lGLTAT 258 (501)
T PHA02558 192 IYSGT-----AKDT-DAPIVVSTWQSAVKQP--KEWFDQFGMVIVDECHL-FTGK-SLTSIITK---LDNCKFKFGLTGS 258 (501)
T ss_pred EecCc-----ccCC-CCCEEEeeHHHHhhch--hhhccccCEEEEEchhc-ccch-hHHHHHHh---hhccceEEEEecc
Confidence 22211 1112 5789999999987643 22478999999999994 3322 22222222 2234568999999
Q ss_pred cchHH-----HHHHhhcCCCCCCCcccccCCCC-CCeEEEECCccccc--e----EEecCC-----CchhHHHHHHHHHH
Q 006122 206 IEAKS-----MSAFFHARKGRRGLEGVELVPRL-EPAILSVEGRGFNV--Q----IHYVEE-----PVSDYVQAAVSTVL 268 (660)
Q Consensus 206 ~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~v--~----~~~~~~-----~~~~~~~~~~~~~~ 268 (660)
+.... +..+|+................. .+.+..+..+..+. . ..|... ............+.
T Consensus 259 p~~~~~~~~~~~~~fG~i~~~v~~~~li~~g~l~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~l~~~~~Rn~~I~~~~~ 338 (501)
T PHA02558 259 LRDGKANILQYVGLFGDIFKPVTTSQLMEEGQVTDLKINSIFLRYPDEDRVKLKGEDYQEEIKYITSHTKRNKWIANLAL 338 (501)
T ss_pred CCCccccHHHHHHhhCCceEEecHHHHHhCCCcCCceEEEEeccCCHHHhhhhcccchHHHHHHHhccHHHHHHHHHHHH
Confidence 93211 23344432111000000000000 00011111000000 0 000000 00000111112222
Q ss_pred HHHhcCCCCcEEEEcCCHHHHHHHHHHHHHHhhhccCCCCCeEEEEccCCCCHHHHhhhcCCCCCCCcEEEEeC-CCccc
Q 006122 269 LIHDKEPPGDILVFLTGQDDIDATIQLLTEEARTSKKNSSGLIILPLYSGLSRAEQEQVFSPTPRGKRKVVIST-NIAET 347 (660)
Q Consensus 269 ~~~~~~~~~~iLVF~~~~~~i~~l~~~L~~~~~~~~~~~~~~~v~~lh~~l~~~~r~~v~~~f~~g~~~vlvaT-~i~e~ 347 (660)
.+. ..++++|||+...++++.+++.|.+. +..+..+||+++.++|..+++.|++|...||||| +++++
T Consensus 339 ~~~--~~~~~~lV~~~~~~h~~~L~~~L~~~---------g~~v~~i~G~~~~~eR~~i~~~~~~~~~~vLvaT~~~l~e 407 (501)
T PHA02558 339 KLA--KKGENTFVMFKYVEHGKPLYEMLKKV---------YDKVYYVSGEVDTEDRNEMKKIAEGGKGIIIVASYGVFST 407 (501)
T ss_pred HHH--hcCCCEEEEEEEHHHHHHHHHHHHHc---------CCCEEEEeCCCCHHHHHHHHHHHhCCCCeEEEEEcceecc
Confidence 222 34567999999999999999999875 6789999999999999999999999999999998 89999
Q ss_pred ccCCCCeEEEEeCCCccceeecCCCCcccceeeecCHHhHHHhhcccCCCCCcE
Q 006122 348 SLTLEGIVYVVDSGFSKQRFYNPISDIENLVVAPISKASARQRAGRAGRVRPGK 401 (660)
Q Consensus 348 Gidip~v~~VId~g~~k~~~~~~~~~~~~l~~~~~s~~~~~QR~GRaGR~~~G~ 401 (660)
|+|+|++++||.... +-|...|.||+||+||..+|+
T Consensus 408 G~Dip~ld~vIl~~p------------------~~s~~~~~QriGR~~R~~~~K 443 (501)
T PHA02558 408 GISIKNLHHVIFAHP------------------SKSKIIVLQSIGRVLRKHGSK 443 (501)
T ss_pred ccccccccEEEEecC------------------CcchhhhhhhhhccccCCCCC
Confidence 999999999996333 456788899999999996653
No 76
>KOG0337 consensus ATP-dependent RNA helicase [RNA processing and modification]
Probab=99.95 E-value=2.4e-28 Score=242.53 Aligned_cols=337 Identities=22% Similarity=0.244 Sum_probs=252.7
Q ss_pred cccCCCCCCCccchHhHHHHhcCCCcHHHHHHHHHHHhcCCEEEEEcCCCCcHH--HHHHHHHHhcccc-CCCeEEEEeC
Q 006122 26 SSSLSSASSIGYGYASIEKQRQRLPVYKYRTAILYLVETHATTIIVGETGSGKT--TQIPQYLKEAGWA-DGGRVIACTQ 102 (660)
Q Consensus 26 ~~~~~~~~~~~~~~~~~~~~~~~lPi~~~~~~i~~~l~~~~~vii~apTGsGKT--~~ip~~l~~~~~~-~~~~~i~v~p 102 (660)
..+|...++.-..++++.+....-|...+|+.|...+ ++..++-.|-|||||| +++|.+..-.... .+.+.+++.|
T Consensus 20 ~g~fqsmgL~~~v~raI~kkg~~~ptpiqRKTipliL-e~~dvv~martgsgktaaf~ipm~e~Lk~~s~~g~Ralilsp 98 (529)
T KOG0337|consen 20 SGGFQSMGLDYKVLRAIHKKGFNTPTPIQRKTIPLIL-EGRDVVGMARTGSGKTAAFLIPMIEKLKSHSQTGLRALILSP 98 (529)
T ss_pred CCCccccCCCHHHHHHHHHhhcCCCCchhccccccee-eccccceeeecCCcchhhHHHHHHHHHhhccccccceeeccC
Confidence 4579999999999999999888899988887766544 5666899999999999 8889776544332 3457899999
Q ss_pred chHHHHH--HHHHHHHHHhCCeeeeEEeeeeecccc--CCCCCceEEEechHHHHHHHhcCCC-CCCCcEEEEeCCCcCC
Q 006122 103 PRRLAVQ--AVASRVAEEMGVKVGEEVGYTIRFEDF--TNKDLTAIKFLTDGVLLREMMDDPL-LTKYSVIMVDEAHERS 177 (660)
Q Consensus 103 ~r~la~~--~~~~~~~~~~~~~~~~~vg~~~~~~~~--~~~~~~~I~v~T~~~ll~~l~~~~~-l~~~~~iIiDE~Her~ 177 (660)
+|+|++| .+.+.+++..+......+|+..-.+.. ... +++|+++|||+++.....-.+ |+.+.+||+||++ |.
T Consensus 99 treLa~qtlkvvkdlgrgt~lr~s~~~ggD~~eeqf~~l~~-npDii~ATpgr~~h~~vem~l~l~sveyVVfdEad-rl 176 (529)
T KOG0337|consen 99 TRELALQTLKVVKDLGRGTKLRQSLLVGGDSIEEQFILLNE-NPDIIIATPGRLLHLGVEMTLTLSSVEYVVFDEAD-RL 176 (529)
T ss_pred cHHHHHHHHHHHHHhccccchhhhhhcccchHHHHHHHhcc-CCCEEEecCceeeeeehheeccccceeeeeehhhh-HH
Confidence 9999998 566667776677776677754332222 223 799999999999876654444 8999999999999 78
Q ss_pred cChhHHHHHHHHHHHhcCCceEEEeecccchHHHHHHhhcCCCCCCCcccccCCCCCCeEEEE--CCcc-ccceEEecCC
Q 006122 178 ISTDILLGLLKKIQRCRSDLRLIISSATIEAKSMSAFFHARKGRRGLEGVELVPRLEPAILSV--EGRG-FNVQIHYVEE 254 (660)
Q Consensus 178 ~~~d~ll~~l~~~~~~~~~~kii~~SAT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~-~~v~~~~~~~ 254 (660)
....+...+-+.+.+...+.+.++||||++-. +.+|-..... +|..+.+ +.+. ...+..|...
T Consensus 177 femgfqeql~e~l~rl~~~~QTllfSatlp~~-lv~fakaGl~-------------~p~lVRldvetkise~lk~~f~~~ 242 (529)
T KOG0337|consen 177 FEMGFQEQLHEILSRLPESRQTLLFSATLPRD-LVDFAKAGLV-------------PPVLVRLDVETKISELLKVRFFRV 242 (529)
T ss_pred HhhhhHHHHHHHHHhCCCcceEEEEeccCchh-hHHHHHccCC-------------CCceEEeehhhhcchhhhhheeee
Confidence 88888888888888888889999999999644 3333333221 1112322 2221 1222333333
Q ss_pred CchhHHHHHHHHHHHHHhc-CCCCcEEEEcCCHHHHHHHHHHHHHHhhhccCCCCCeEEEEccCCCCHHHHhhhcCCCCC
Q 006122 255 PVSDYVQAAVSTVLLIHDK-EPPGDILVFLTGQDDIDATIQLLTEEARTSKKNSSGLIILPLYSGLSRAEQEQVFSPTPR 333 (660)
Q Consensus 255 ~~~~~~~~~~~~~~~~~~~-~~~~~iLVF~~~~~~i~~l~~~L~~~~~~~~~~~~~~~v~~lh~~l~~~~r~~v~~~f~~ 333 (660)
...+. ...++.+... ....+++||+++..+++.+...|... ++.+..+||.|+++-|..-+..|..
T Consensus 243 ~~a~K----~aaLl~il~~~~~~~~t~vf~~tk~hve~~~~ll~~~---------g~~~s~iysslD~~aRk~~~~~F~~ 309 (529)
T KOG0337|consen 243 RKAEK----EAALLSILGGRIKDKQTIVFVATKHHVEYVRGLLRDF---------GGEGSDIYSSLDQEARKINGRDFRG 309 (529)
T ss_pred ccHHH----HHHHHHHHhccccccceeEEecccchHHHHHHHHHhc---------CCCccccccccChHhhhhccccccC
Confidence 22222 2222333222 22457999999999999999999876 7888899999999999999999999
Q ss_pred CCcEEEEeCCCcccccCCCCeEEEEeCCCccceeecCCCCcccceeeecCHHhHHHhhcccCCC-CCcEEEEccChHH
Q 006122 334 GKRKVVISTNIAETSLTLEGIVYVVDSGFSKQRFYNPISDIENLVVAPISKASARQRAGRAGRV-RPGKCYRLYTEEY 410 (660)
Q Consensus 334 g~~~vlvaT~i~e~Gidip~v~~VId~g~~k~~~~~~~~~~~~l~~~~~s~~~~~QR~GRaGR~-~~G~~~~l~~~~~ 410 (660)
++..++|.|+++++|+|||..+-||++++ |.+..-|.||.||+.|. +.|..|.++..++
T Consensus 310 ~k~~~lvvTdvaaRG~diplldnvinyd~------------------p~~~klFvhRVgr~aragrtg~aYs~V~~~~ 369 (529)
T KOG0337|consen 310 RKTSILVVTDVAARGLDIPLLDNVINYDF------------------PPDDKLFVHRVGRVARAGRTGRAYSLVASTD 369 (529)
T ss_pred CccceEEEehhhhccCCCccccccccccC------------------CCCCceEEEEecchhhccccceEEEEEeccc
Confidence 99999999999999999999999999777 55555666999999998 6899999987654
No 77
>COG4581 Superfamily II RNA helicase [DNA replication, recombination, and repair]
Probab=99.95 E-value=1.7e-26 Score=259.14 Aligned_cols=333 Identities=19% Similarity=0.165 Sum_probs=235.0
Q ss_pred hcCCCcHHHHHHHHHHHhcCCEEEEEcCCCCcHHHHHHHHHHhccccCCCeEEEEeCchHHHHHHHHHHHHHHhC--Cee
Q 006122 46 RQRLPVYKYRTAILYLVETHATTIIVGETGSGKTTQIPQYLKEAGWADGGRVIACTQPRRLAVQAVASRVAEEMG--VKV 123 (660)
Q Consensus 46 ~~~lPi~~~~~~i~~~l~~~~~vii~apTGsGKT~~ip~~l~~~~~~~~~~~i~v~p~r~la~~~~~~~~~~~~~--~~~ 123 (660)
...+.++.+|++.+..|..++.|+|+||||||||.+...++..+ ..++.+++|.+|.++|..|...+..++.-. ..+
T Consensus 115 ~~~F~LD~fQ~~a~~~Ler~esVlV~ApTssGKTvVaeyAi~~a-l~~~qrviYTsPIKALsNQKyrdl~~~fgdv~~~v 193 (1041)
T COG4581 115 EYPFELDPFQQEAIAILERGESVLVCAPTSSGKTVVAEYAIALA-LRDGQRVIYTSPIKALSNQKYRDLLAKFGDVADMV 193 (1041)
T ss_pred hCCCCcCHHHHHHHHHHhCCCcEEEEccCCCCcchHHHHHHHHH-HHcCCceEeccchhhhhhhHHHHHHHHhhhhhhhc
Confidence 35677999999999999999999999999999996655444443 446677999999999999988777666552 234
Q ss_pred eeEEeeeeeccccCCCCCceEEEechHHHHHHHhcC-CCCCCCcEEEEeCCCcCCcChhHHHHHHHHHHHhcCCceEEEe
Q 006122 124 GEEVGYTIRFEDFTNKDLTAIKFLTDGVLLREMMDD-PLLTKYSVIMVDEAHERSISTDILLGLLKKIQRCRSDLRLIIS 202 (660)
Q Consensus 124 ~~~vg~~~~~~~~~~~~~~~I~v~T~~~ll~~l~~~-~~l~~~~~iIiDE~Her~~~~d~ll~~l~~~~~~~~~~kii~~ 202 (660)
|..+|. -..++ .+.++++|+++|-+++..+ ..+..+..||+||+|- .-+.+--...-..+......+++|++
T Consensus 194 GL~TGD-----v~IN~-~A~clvMTTEILRnMlyrg~~~~~~i~~ViFDEvHy-i~D~eRG~VWEE~Ii~lP~~v~~v~L 266 (1041)
T COG4581 194 GLMTGD-----VSINP-DAPCLVMTTEILRNMLYRGSESLRDIEWVVFDEVHY-IGDRERGVVWEEVIILLPDHVRFVFL 266 (1041)
T ss_pred cceecc-----eeeCC-CCceEEeeHHHHHHHhccCcccccccceEEEEeeee-ccccccchhHHHHHHhcCCCCcEEEE
Confidence 555562 22344 7899999999998888766 4599999999999991 11111111222223445667899999
Q ss_pred eccc-chHHHHHHhhcCCCCCCCcccccCCCCCCeEEEECCccccceEEecCCC--------chhHHHH----HH-----
Q 006122 203 SATI-EAKSMSAFFHARKGRRGLEGVELVPRLEPAILSVEGRGFNVQIHYVEEP--------VSDYVQA----AV----- 264 (660)
Q Consensus 203 SAT~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~--------~~~~~~~----~~----- 264 (660)
|||+ |++.|+.|++... ..+..++..+.|+.|.+.++.... ..+.... +.
T Consensus 267 SATv~N~~EF~~Wi~~~~------------~~~~~vv~t~~RpvPL~~~~~~~~~l~~lvde~~~~~~~~~~~a~~~l~~ 334 (1041)
T COG4581 267 SATVPNAEEFAEWIQRVH------------SQPIHVVSTEHRPVPLEHFVYVGKGLFDLVDEKKKFNAENFPSANRSLSC 334 (1041)
T ss_pred eCCCCCHHHHHHHHHhcc------------CCCeEEEeecCCCCCeEEEEecCCceeeeecccccchhhcchhhhhhhhc
Confidence 9999 9999999998643 123346667777777776665431 0100000 00
Q ss_pred ---------------------------------HHHHHHHhcCCCCcEEEEcCCHHHHHHHHHHHHHH------------
Q 006122 265 ---------------------------------STVLLIHDKEPPGDILVFLTGQDDIDATIQLLTEE------------ 299 (660)
Q Consensus 265 ---------------------------------~~~~~~~~~~~~~~iLVF~~~~~~i~~l~~~L~~~------------ 299 (660)
..+.........-++++|+=++..|+..+..+...
T Consensus 335 ~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~iv~~l~~~~~lP~I~F~FSr~~Ce~~a~~~~~ldl~~~~~~e~~i 414 (1041)
T COG4581 335 FSEKVRETDDGDVGRYARRTKALRGSAKGPAGRPEIVNKLDKDNLLPAIVFSFSRRGCEEAAQILSTLDLVLTEEKERAI 414 (1041)
T ss_pred cchhccccCccccccccccccccCCcccccccchHHHhhhhhhcCCceEEEEEchhhHHHHHHHhcccccccCCcHHHHH
Confidence 01122222234457999999999998888777521
Q ss_pred -------hhhccCCCCCe-------------EEEEccCCCCHHHHhhhcCCCCCCCcEEEEeCCCcccccCCCCeEEEEe
Q 006122 300 -------ARTSKKNSSGL-------------IILPLYSGLSRAEQEQVFSPTPRGKRKVVISTNIAETSLTLEGIVYVVD 359 (660)
Q Consensus 300 -------~~~~~~~~~~~-------------~v~~lh~~l~~~~r~~v~~~f~~g~~~vlvaT~i~e~Gidip~v~~VId 359 (660)
...+..+..++ .++.||+||-+..+..+.+.|..|.+||++||.+++.|+|+|.-++|+
T Consensus 415 ~~ii~~~i~~L~~ed~~lp~~~~~~~~~L~RGiavHH~GlLP~~K~~vE~Lfq~GLvkvvFaTeT~s~GiNmPartvv~- 493 (1041)
T COG4581 415 REIIDHAIGDLAEEDRELPLQILEISALLLRGIAVHHAGLLPAIKELVEELFQEGLVKVVFATETFAIGINMPARTVVF- 493 (1041)
T ss_pred HHHHHHHHhhcChhhhcCcccHHHHHHHHhhhhhhhccccchHHHHHHHHHHhccceeEEeehhhhhhhcCCcccceee-
Confidence 11111111111 367999999999999999999999999999999999999999555544
Q ss_pred CCCccceeecCCCCcccceeeecCHHhHHHhhcccCCC---CCcEEEEccCh
Q 006122 360 SGFSKQRFYNPISDIENLVVAPISKASARQRAGRAGRV---RPGKCYRLYTE 408 (660)
Q Consensus 360 ~g~~k~~~~~~~~~~~~l~~~~~s~~~~~QR~GRaGR~---~~G~~~~l~~~ 408 (660)
+++.| +|... ..|.+..+|.|+.|||||. ..|.++....+
T Consensus 494 ~~l~K---~dG~~------~r~L~~gEy~QmsGRAGRRGlD~~G~vI~~~~~ 536 (1041)
T COG4581 494 TSLSK---FDGNG------HRWLSPGEYTQMSGRAGRRGLDVLGTVIVIEPP 536 (1041)
T ss_pred eeeEE---ecCCc------eeecChhHHHHhhhhhccccccccceEEEecCC
Confidence 55544 44322 2399999999999999998 67888887543
No 78
>KOG0947 consensus Cytoplasmic exosomal RNA helicase SKI2, DEAD-box superfamily [RNA processing and modification]
Probab=99.95 E-value=7e-27 Score=252.01 Aligned_cols=323 Identities=18% Similarity=0.181 Sum_probs=227.8
Q ss_pred CCCcHHHHHHHHHHHhcCCEEEEEcCCCCcHHHHHHHHHHhccccCCCeEEEEeCchHHHHHHHHHHHHHHhCCeeeeEE
Q 006122 48 RLPVYKYRTAILYLVETHATTIIVGETGSGKTTQIPQYLKEAGWADGGRVIACTQPRRLAVQAVASRVAEEMGVKVGEEV 127 (660)
Q Consensus 48 ~lPi~~~~~~i~~~l~~~~~vii~apTGsGKT~~ip~~l~~~~~~~~~~~i~v~p~r~la~~~~~~~~~~~~~~~~~~~v 127 (660)
.+-+..+|++.+..+..++.|+|.|+|.+|||.++...+. ....+..+.||-+|-++|..|...+.-.. +| .+|..+
T Consensus 295 pFelD~FQk~Ai~~lerg~SVFVAAHTSAGKTvVAEYAia-laq~h~TR~iYTSPIKALSNQKfRDFk~t-F~-DvgLlT 371 (1248)
T KOG0947|consen 295 PFELDTFQKEAIYHLERGDSVFVAAHTSAGKTVVAEYAIA-LAQKHMTRTIYTSPIKALSNQKFRDFKET-FG-DVGLLT 371 (1248)
T ss_pred CCCccHHHHHHHHHHHcCCeEEEEecCCCCcchHHHHHHH-HHHhhccceEecchhhhhccchHHHHHHh-cc-ccceee
Confidence 3458899999999999999999999999999965554333 33456778999999999999977664332 22 345566
Q ss_pred eeeeeccccCCCCCceEEEechHHHHHHHhcCCC-CCCCcEEEEeCCC-----cCCcChhHHHHHHHHHHHhcCCceEEE
Q 006122 128 GYTIRFEDFTNKDLTAIKFLTDGVLLREMMDDPL-LTKYSVIMVDEAH-----ERSISTDILLGLLKKIQRCRSDLRLII 201 (660)
Q Consensus 128 g~~~~~~~~~~~~~~~I~v~T~~~ll~~l~~~~~-l~~~~~iIiDE~H-----er~~~~d~ll~~l~~~~~~~~~~kii~ 201 (660)
| +....+ .+.++++|+++|-.++-+... ++++.+||+||+| ||+.-.+ ..+.-..+.+++|+
T Consensus 372 G-----DvqinP-eAsCLIMTTEILRsMLYrgadliRDvE~VIFDEVHYiND~eRGvVWE------EViIMlP~HV~~Il 439 (1248)
T KOG0947|consen 372 G-----DVQINP-EASCLIMTTEILRSMLYRGADLIRDVEFVIFDEVHYINDVERGVVWE------EVIIMLPRHVNFIL 439 (1248)
T ss_pred c-----ceeeCC-CcceEeehHHHHHHHHhcccchhhccceEEEeeeeecccccccccce------eeeeeccccceEEE
Confidence 6 234455 799999999999999866654 8999999999999 6664221 11233567899999
Q ss_pred eeccc-chHHHHHHhhcCCCCCCCcccccCCCCCCeEEEECCccccceEEecCCC-------------------------
Q 006122 202 SSATI-EAKSMSAFFHARKGRRGLEGVELVPRLEPAILSVEGRGFNVQIHYVEEP------------------------- 255 (660)
Q Consensus 202 ~SAT~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~------------------------- 255 (660)
+|||+ |...|++|.+....+ ...++....|+.|.+.+.....
T Consensus 440 LSATVPN~~EFA~WIGRtK~K------------~IyViST~kRPVPLEh~l~t~~~l~kiidq~g~fl~~~~~~a~~~~~ 507 (1248)
T KOG0947|consen 440 LSATVPNTLEFADWIGRTKQK------------TIYVISTSKRPVPLEHYLYTKKSLFKIIDQNGIFLLKGIKDAKDSLK 507 (1248)
T ss_pred EeccCCChHHHHHHhhhccCc------------eEEEEecCCCccceEEEEEeccceehhhcccchhhhhcchhhhhhhc
Confidence 99999 899999999976532 2224444445555544321110
Q ss_pred --------------------------------------chhHH--HHHHHHHHHHHhcCCCCcEEEEcCCHHHHHHHHHH
Q 006122 256 --------------------------------------VSDYV--QAAVSTVLLIHDKEPPGDILVFLTGQDDIDATIQL 295 (660)
Q Consensus 256 --------------------------------------~~~~~--~~~~~~~~~~~~~~~~~~iLVF~~~~~~i~~l~~~ 295 (660)
..+.- ......+.++. ...--+++|||=+++.|++.++.
T Consensus 508 ~~ak~~~~~~~~~~~~rgs~~~ggk~~~~~g~~r~~~~~~nrr~~~~~l~lin~L~-k~~lLP~VvFvFSkkrCde~a~~ 586 (1248)
T KOG0947|consen 508 KEAKFVDVEKSDARGGRGSQKRGGKTNYHNGGSRGSGIGKNRRKQPTWLDLINHLR-KKNLLPVVVFVFSKKRCDEYADY 586 (1248)
T ss_pred ccccccccccccccccccccccCCcCCCCCCCcccccccccccccchHHHHHHHHh-hcccCceEEEEEccccHHHHHHH
Confidence 00000 01222222222 23345799999999999999998
Q ss_pred HHHHhhh---------------------ccCCCCC---------eEEEEccCCCCHHHHhhhcCCCCCCCcEEEEeCCCc
Q 006122 296 LTEEART---------------------SKKNSSG---------LIILPLYSGLSRAEQEQVFSPTPRGKRKVVISTNIA 345 (660)
Q Consensus 296 L~~~~~~---------------------~~~~~~~---------~~v~~lh~~l~~~~r~~v~~~f~~g~~~vlvaT~i~ 345 (660)
|....-. ..++.|. -.++.||||+-+--+.-|+..|..|-+||++||.++
T Consensus 587 L~~~nL~~~~EKseV~lfl~k~~~rLk~~DR~LPQvl~m~~ll~RGiaVHH~GlLPivKE~VE~LFqrGlVKVLFATETF 666 (1248)
T KOG0947|consen 587 LTNLNLTDSKEKSEVHLFLSKAVARLKGEDRNLPQVLSMRSLLLRGIAVHHGGLLPIVKEVVELLFQRGLVKVLFATETF 666 (1248)
T ss_pred HhccCcccchhHHHHHHHHHHHHHhcChhhccchHHHHHHHHHhhcchhhcccchHHHHHHHHHHHhcCceEEEeehhhh
Confidence 8543110 0111111 248999999999999999999999999999999999
Q ss_pred ccccCCCCeEEEEeCCCccceeecCCCCcccceeeecCHHhHHHhhcccCCC---CCcEEEEccCh
Q 006122 346 ETSLTLEGIVYVVDSGFSKQRFYNPISDIENLVVAPISKASARQRAGRAGRV---RPGKCYRLYTE 408 (660)
Q Consensus 346 e~Gidip~v~~VId~g~~k~~~~~~~~~~~~l~~~~~s~~~~~QR~GRaGR~---~~G~~~~l~~~ 408 (660)
++|||.|.-++|+++=. .+|... .......+|.||+|||||. .-|.++.+...
T Consensus 667 AMGVNMPARtvVF~Sl~----KhDG~e------fR~L~PGEytQMAGRAGRRGlD~tGTVii~~~~ 722 (1248)
T KOG0947|consen 667 AMGVNMPARTVVFSSLR----KHDGNE------FRELLPGEYTQMAGRAGRRGLDETGTVIIMCKD 722 (1248)
T ss_pred hhhcCCCceeEEeeehh----hccCcc------eeecCChhHHhhhccccccccCcCceEEEEecC
Confidence 99999998888887432 133222 2367788999999999998 67887777654
No 79
>PRK09401 reverse gyrase; Reviewed
Probab=99.94 E-value=4.3e-26 Score=267.65 Aligned_cols=275 Identities=19% Similarity=0.194 Sum_probs=178.0
Q ss_pred CCCcHHHHHHHHHHHhcCCEEEEEcCCCCcHHH-HHHHHHHhccccCCCeEEEEeCchHHHHHHH--HHHHHHHhCCeee
Q 006122 48 RLPVYKYRTAILYLVETHATTIIVGETGSGKTT-QIPQYLKEAGWADGGRVIACTQPRRLAVQAV--ASRVAEEMGVKVG 124 (660)
Q Consensus 48 ~lPi~~~~~~i~~~l~~~~~vii~apTGsGKT~-~ip~~l~~~~~~~~~~~i~v~p~r~la~~~~--~~~~~~~~~~~~~ 124 (660)
....++.|...+..+..+++++++||||||||+ .++...... ..+.++++++|+|+|+.|.. .+.++...+..+.
T Consensus 78 G~~pt~iQ~~~i~~il~g~dv~i~ApTGsGKT~f~l~~~~~l~--~~g~~alIL~PTreLa~Qi~~~l~~l~~~~~~~~~ 155 (1176)
T PRK09401 78 GSKPWSLQRTWAKRLLLGESFAIIAPTGVGKTTFGLVMSLYLA--KKGKKSYIIFPTRLLVEQVVEKLEKFGEKVGCGVK 155 (1176)
T ss_pred CCCCcHHHHHHHHHHHCCCcEEEEcCCCCCHHHHHHHHHHHHH--hcCCeEEEEeccHHHHHHHHHHHHHHhhhcCceEE
Confidence 346677888888888899999999999999994 344333222 24677899999999998843 3344445555555
Q ss_pred eEEeeeee----cc---ccCCCCCceEEEechHHHHHHHhcCCCCCCCcEEEEeCCCcCCcC-----------hhH----
Q 006122 125 EEVGYTIR----FE---DFTNKDLTAIKFLTDGVLLREMMDDPLLTKYSVIMVDEAHERSIS-----------TDI---- 182 (660)
Q Consensus 125 ~~vg~~~~----~~---~~~~~~~~~I~v~T~~~ll~~l~~~~~l~~~~~iIiDE~Her~~~-----------~d~---- 182 (660)
...|.... .+ ........+|+|+||+.|.+.+. .....++++|||||||. .++ .+|
T Consensus 156 ~~~g~~~~~~~ek~~~~~~l~~~~~~IlV~Tp~rL~~~~~-~l~~~~~~~lVvDEaD~-~L~~~k~id~~l~~lGF~~~~ 233 (1176)
T PRK09401 156 ILYYHSSLKKKEKEEFLERLKEGDFDILVTTSQFLSKNFD-ELPKKKFDFVFVDDVDA-VLKSSKNIDKLLYLLGFSEED 233 (1176)
T ss_pred EEEccCCcchhHHHHHHHHHhcCCCCEEEECHHHHHHHHH-hccccccCEEEEEChHH-hhhcccchhhHHHhCCCCHHH
Confidence 45543210 00 01112258999999999998765 22255699999999993 221 111
Q ss_pred HHHHHHHH-------------HHh--------cCCceEEEeecccchHHHH-HHhhcCCCCCCCcccccCCCCCCeEEEE
Q 006122 183 LLGLLKKI-------------QRC--------RSDLRLIISSATIEAKSMS-AFFHARKGRRGLEGVELVPRLEPAILSV 240 (660)
Q Consensus 183 ll~~l~~~-------------~~~--------~~~~kii~~SAT~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 240 (660)
+...++.+ ... ..+.+++++|||+++.... .+|.... .+.+
T Consensus 234 i~~i~~~i~~~~~~~~~~~~i~~l~~~i~~~~~~~~q~ilfSAT~~~~~~~~~l~~~ll-----------------~~~v 296 (1176)
T PRK09401 234 IEKAMELIRLKRKYEEIYEKIRELEEKIAELKDKKGVLVVSSATGRPRGNRVKLFRELL-----------------GFEV 296 (1176)
T ss_pred HHHHHHhcccccccchhhhHHHHHHHhhhhcccCCceEEEEeCCCCccchHHHHhhccc-----------------eEEe
Confidence 11111111 000 1157899999999654232 2333221 1222
Q ss_pred CC---ccccceEEecCCCchhHHHHHHHHHHHHHhcCCCCcEEEEcCCHHH---HHHHHHHHHHHhhhccCCCCCeEEEE
Q 006122 241 EG---RGFNVQIHYVEEPVSDYVQAAVSTVLLIHDKEPPGDILVFLTGQDD---IDATIQLLTEEARTSKKNSSGLIILP 314 (660)
Q Consensus 241 ~~---~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iLVF~~~~~~---i~~l~~~L~~~~~~~~~~~~~~~v~~ 314 (660)
.. ...++...|.... +..+. +..+.... +.++||||++++. ++.+++.|.+. ++.+..
T Consensus 297 ~~~~~~~rnI~~~yi~~~--~k~~~----L~~ll~~l-~~~~LIFv~t~~~~~~ae~l~~~L~~~---------gi~v~~ 360 (1176)
T PRK09401 297 GSPVFYLRNIVDSYIVDE--DSVEK----LVELVKRL-GDGGLIFVPSDKGKEYAEELAEYLEDL---------GINAEL 360 (1176)
T ss_pred cCcccccCCceEEEEEcc--cHHHH----HHHHHHhc-CCCEEEEEecccChHHHHHHHHHHHHC---------CCcEEE
Confidence 11 1123444554332 22222 22222222 3469999999777 99999999876 899999
Q ss_pred ccCCCCHHHHhhhcCCCCCCCcEEEEe----CCCcccccCCCC-eEEEEeCCCcc
Q 006122 315 LYSGLSRAEQEQVFSPTPRGKRKVVIS----TNIAETSLTLEG-IVYVVDSGFSK 364 (660)
Q Consensus 315 lh~~l~~~~r~~v~~~f~~g~~~vlva----T~i~e~Gidip~-v~~VId~g~~k 364 (660)
+||+| + +.++.|++|+.+|||| |+++++|||+|+ |+|||++|..+
T Consensus 361 ~hg~l---~--~~l~~F~~G~~~VLVatas~tdv~aRGIDiP~~IryVI~y~vP~ 410 (1176)
T PRK09401 361 AISGF---E--RKFEKFEEGEVDVLVGVASYYGVLVRGIDLPERIRYAIFYGVPK 410 (1176)
T ss_pred EeCcH---H--HHHHHHHCCCCCEEEEecCCCCceeecCCCCcceeEEEEeCCCC
Confidence 99999 2 2349999999999999 699999999999 89999999865
No 80
>KOG0948 consensus Nuclear exosomal RNA helicase MTR4, DEAD-box superfamily [RNA processing and modification]
Probab=99.94 E-value=6.4e-27 Score=246.46 Aligned_cols=323 Identities=18% Similarity=0.172 Sum_probs=231.1
Q ss_pred CCcHHHHHHHHHHHhcCCEEEEEcCCCCcHHHHHHHHHHhccccCCCeEEEEeCchHHHHHHHHHHHHHHhCCeeeeEEe
Q 006122 49 LPVYKYRTAILYLVETHATTIIVGETGSGKTTQIPQYLKEAGWADGGRVIACTQPRRLAVQAVASRVAEEMGVKVGEEVG 128 (660)
Q Consensus 49 lPi~~~~~~i~~~l~~~~~vii~apTGsGKT~~ip~~l~~~~~~~~~~~i~v~p~r~la~~~~~~~~~~~~~~~~~~~vg 128 (660)
+-+.++|...+..+..++.|+|+|-|.+|||..+...+... ...+.++||-+|-++|..|.+.+...+.- .+|.-+|
T Consensus 128 F~LDpFQ~~aI~Cidr~eSVLVSAHTSAGKTVVAeYAIA~s-Lr~kQRVIYTSPIKALSNQKYREl~~EF~--DVGLMTG 204 (1041)
T KOG0948|consen 128 FTLDPFQSTAIKCIDRGESVLVSAHTSAGKTVVAEYAIAMS-LREKQRVIYTSPIKALSNQKYRELLEEFK--DVGLMTG 204 (1041)
T ss_pred cccCchHhhhhhhhcCCceEEEEeecCCCcchHHHHHHHHH-HHhcCeEEeeChhhhhcchhHHHHHHHhc--ccceeec
Confidence 34889999999999999999999999999995555444433 44567899999999999998777655543 3566666
Q ss_pred eeeeccccCCCCCceEEEechHHHHHHHhcCCC-CCCCcEEEEeCCC-----cCCcChhHHHHHHHHHHHhcCCceEEEe
Q 006122 129 YTIRFEDFTNKDLTAIKFLTDGVLLREMMDDPL-LTKYSVIMVDEAH-----ERSISTDILLGLLKKIQRCRSDLRLIIS 202 (660)
Q Consensus 129 ~~~~~~~~~~~~~~~I~v~T~~~ll~~l~~~~~-l~~~~~iIiDE~H-----er~~~~d~ll~~l~~~~~~~~~~kii~~ 202 (660)
. -..++ ++..+|+|+++|-.++-.+.. ++.+.+||+||+| ||++-.+ ..+.-..++.|.|++
T Consensus 205 D-----VTInP-~ASCLVMTTEILRsMLYRGSEvmrEVaWVIFDEIHYMRDkERGVVWE------ETIIllP~~vr~VFL 272 (1041)
T KOG0948|consen 205 D-----VTINP-DASCLVMTTEILRSMLYRGSEVMREVAWVIFDEIHYMRDKERGVVWE------ETIILLPDNVRFVFL 272 (1041)
T ss_pred c-----eeeCC-CCceeeeHHHHHHHHHhccchHhheeeeEEeeeehhccccccceeee------eeEEeccccceEEEE
Confidence 2 22345 788999999999988866554 8999999999999 5654221 112234678999999
Q ss_pred eccc-chHHHHHHhhcCCCCCCCcccccCCCCCCeEEEECCccccceEEecCC----------CchhH----HHHH----
Q 006122 203 SATI-EAKSMSAFFHARKGRRGLEGVELVPRLEPAILSVEGRGFNVQIHYVEE----------PVSDY----VQAA---- 263 (660)
Q Consensus 203 SAT~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~----------~~~~~----~~~~---- 263 (660)
|||+ |+..|++|...... .++.++..+-|+-|...+..+. ...++ ...+
T Consensus 273 SATiPNA~qFAeWI~~ihk------------QPcHVVYTdyRPTPLQHyifP~ggdGlylvVDek~~FrednF~~am~~l 340 (1041)
T KOG0948|consen 273 SATIPNARQFAEWICHIHK------------QPCHVVYTDYRPTPLQHYIFPAGGDGLYLVVDEKGKFREDNFQKAMSVL 340 (1041)
T ss_pred eccCCCHHHHHHHHHHHhc------------CCceEEeecCCCCcceeeeecCCCCeeEEEEecccccchHHHHHHHHHh
Confidence 9999 99999999876431 1233555666666665542221 00001 1111
Q ss_pred ------------------------------HHHHHHHHhcCCCCcEEEEcCCHHHHHHHHHHHHHHhhh-----------
Q 006122 264 ------------------------------VSTVLLIHDKEPPGDILVFLTGQDDIDATIQLLTEEART----------- 302 (660)
Q Consensus 264 ------------------------------~~~~~~~~~~~~~~~iLVF~~~~~~i~~l~~~L~~~~~~----------- 302 (660)
+..+..........+++||+=++++||..|-.+.+..-+
T Consensus 341 ~~~~~~~~~~~~~~k~~kG~~~~~~~~~s~i~kiVkmi~~~~~~PVIvFSFSkkeCE~~Alqm~kldfN~deEk~~V~~i 420 (1041)
T KOG0948|consen 341 RKAGESDGKKKANKKGRKGGTGGKGPGDSDIYKIVKMIMERNYLPVIVFSFSKKECEAYALQMSKLDFNTDEEKELVETI 420 (1041)
T ss_pred hccCCCccccccccccccCCcCCCCCCcccHHHHHHHHHhhcCCceEEEEecHhHHHHHHHhhccCcCCChhHHHHHHHH
Confidence 112222222334568999999999999988877553211
Q ss_pred -------cc---CCCC---------CeEEEEccCCCCHHHHhhhcCCCCCCCcEEEEeCCCcccccCCCCeEEEEeCCCc
Q 006122 303 -------SK---KNSS---------GLIILPLYSGLSRAEQEQVFSPTPRGKRKVVISTNIAETSLTLEGIVYVVDSGFS 363 (660)
Q Consensus 303 -------~~---~~~~---------~~~v~~lh~~l~~~~r~~v~~~f~~g~~~vlvaT~i~e~Gidip~v~~VId~g~~ 363 (660)
+. ...| .-.|+.|||||-+--++.|+-.|.+|.+|+|+||.+++.|+|.|+-++|.-
T Consensus 421 F~nAi~~LseeDr~LPqie~iLPLL~RGIGIHHsGLLPIlKE~IEILFqEGLvKvLFATETFsiGLNMPAkTVvFT---- 496 (1041)
T KOG0948|consen 421 FNNAIDQLSEEDRELPQIENILPLLRRGIGIHHSGLLPILKEVIEILFQEGLVKVLFATETFSIGLNMPAKTVVFT---- 496 (1041)
T ss_pred HHHHHHhcChhhccchHHHHHHHHHHhccccccccchHHHHHHHHHHHhccHHHHHHhhhhhhhccCCcceeEEEe----
Confidence 11 1111 124899999999998888888999999999999999999999997776652
Q ss_pred cceeecCCCCcccceeeecCHHhHHHhhcccCCC---CCcEEEEccCh
Q 006122 364 KQRFYNPISDIENLVVAPISKASARQRAGRAGRV---RPGKCYRLYTE 408 (660)
Q Consensus 364 k~~~~~~~~~~~~l~~~~~s~~~~~QR~GRaGR~---~~G~~~~l~~~ 408 (660)
..+.||... ..|+|..+|+||+|||||. ..|.|+.++++
T Consensus 497 ~~rKfDG~~------fRwissGEYIQMSGRAGRRG~DdrGivIlmiDe 538 (1041)
T KOG0948|consen 497 AVRKFDGKK------FRWISSGEYIQMSGRAGRRGIDDRGIVILMIDE 538 (1041)
T ss_pred eccccCCcc------eeeecccceEEecccccccCCCCCceEEEEecC
Confidence 233355443 3499999999999999998 78999999875
No 81
>KOG0352 consensus ATP-dependent DNA helicase [Replication, recombination and repair]
Probab=99.94 E-value=1.3e-26 Score=230.10 Aligned_cols=309 Identities=18% Similarity=0.197 Sum_probs=207.7
Q ss_pred HHHHHHHHhcCCEEEEEcCCCCcHH--HHHHHHHHhccccCCCeEEEEeCchHHHHHHHHHHHHHHhCCeeeeEEe----
Q 006122 55 RTAILYLVETHATTIIVGETGSGKT--TQIPQYLKEAGWADGGRVIACTQPRRLAVQAVASRVAEEMGVKVGEEVG---- 128 (660)
Q Consensus 55 ~~~i~~~l~~~~~vii~apTGsGKT--~~ip~~l~~~~~~~~~~~i~v~p~r~la~~~~~~~~~~~~~~~~~~~vg---- 128 (660)
.+++.-++..+++|.|+.|||+||| +|+|.++.. +..|++.|..+|...++-.... +.+.+..+-.
T Consensus 26 E~A~~c~VK~k~DVyVsMPTGaGKSLCyQLPaL~~~------gITIV~SPLiALIkDQiDHL~~--LKVp~~SLNSKlSt 97 (641)
T KOG0352|consen 26 EQAINCIVKRKCDVYVSMPTGAGKSLCYQLPALVHG------GITIVISPLIALIKDQIDHLKR--LKVPCESLNSKLST 97 (641)
T ss_pred HHHHHHHHhccCcEEEeccCCCchhhhhhchHHHhC------CeEEEehHHHHHHHHHHHHHHh--cCCchhHhcchhhH
Confidence 3445556678899999999999999 999987654 3468999998888777655221 2222111110
Q ss_pred ---eeeeccc-cCCCCCceEEEechHHHHH----HHhcC-CCCCCCcEEEEeCCCcCCc-ChhHHHHHHH--HHHHhcCC
Q 006122 129 ---YTIRFED-FTNKDLTAIKFLTDGVLLR----EMMDD-PLLTKYSVIMVDEAHERSI-STDILLGLLK--KIQRCRSD 196 (660)
Q Consensus 129 ---~~~~~~~-~~~~~~~~I~v~T~~~ll~----~l~~~-~~l~~~~~iIiDE~Her~~-~~d~ll~~l~--~~~~~~~~ 196 (660)
..+-.+- ...+ +.+++|.||+..-. .+++. ..-..++++|+||||.-+- ..||...+++ .+....++
T Consensus 98 ~ER~ri~~DL~~ekp-~~K~LYITPE~AAt~~FQ~lLn~L~~r~~L~Y~vVDEAHCVSQWGHDFRPDYL~LG~LRS~~~~ 176 (641)
T KOG0352|consen 98 VERSRIMGDLAKEKP-TIKMLYITPEGAATDGFQKLLNGLANRDVLRYIVVDEAHCVSQWGHDFRPDYLTLGSLRSVCPG 176 (641)
T ss_pred HHHHHHHHHHHhcCC-ceeEEEEchhhhhhhhHHHHHHHHhhhceeeeEEechhhhHhhhccccCcchhhhhhHHhhCCC
Confidence 0000111 1223 78999999976422 11111 1244578999999997653 3355555544 36667789
Q ss_pred ceEEEeecccchHHHHHHhhcCCCCCCCcccccCCCCCCeEEEECCccccceEEecCCCchhHHHHHHHHHHHHH-----
Q 006122 197 LRLIISSATIEAKSMSAFFHARKGRRGLEGVELVPRLEPAILSVEGRGFNVQIHYVEEPVSDYVQAAVSTVLLIH----- 271 (660)
Q Consensus 197 ~kii~~SAT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~----- 271 (660)
...+.++||.+.+.-.+.+...... .+..++..+. |.-..+|.. ...+.+......+.+..
T Consensus 177 vpwvALTATA~~~VqEDi~~qL~L~-----------~PVAiFkTP~--FR~NLFYD~-~~K~~I~D~~~~LaDF~~~~LG 242 (641)
T KOG0352|consen 177 VPWVALTATANAKVQEDIAFQLKLR-----------NPVAIFKTPT--FRDNLFYDN-HMKSFITDCLTVLADFSSSNLG 242 (641)
T ss_pred CceEEeecccChhHHHHHHHHHhhc-----------CcHHhccCcc--hhhhhhHHH-HHHHHhhhHhHhHHHHHHHhcC
Confidence 9999999999777655555433210 0111222221 111222211 11111211111121111
Q ss_pred --------hcCCCCcEEEEcCCHHHHHHHHHHHHHHhhhccCCCCCeEEEEccCCCCHHHHhhhcCCCCCCCcEEEEeCC
Q 006122 272 --------DKEPPGDILVFLTGQDDIDATIQLLTEEARTSKKNSSGLIILPLYSGLSRAEQEQVFSPTPRGKRKVVISTN 343 (660)
Q Consensus 272 --------~~~~~~~iLVF~~~~~~i~~l~~~L~~~~~~~~~~~~~~~v~~lh~~l~~~~r~~v~~~f~~g~~~vlvaT~ 343 (660)
.....|.-||||.|++++|.++-.|... ++....+|+||...||..+.+.+-+|+.-||+||+
T Consensus 243 ~~~~~~~~~K~~~GCGIVYCRTR~~cEq~AI~l~~~---------Gi~A~AYHAGLK~~ERTeVQe~WM~~~~PvI~AT~ 313 (641)
T KOG0352|consen 243 KHEKASQNKKTFTGCGIVYCRTRNECEQVAIMLEIA---------GIPAMAYHAGLKKKERTEVQEKWMNNEIPVIAATV 313 (641)
T ss_pred ChhhhhcCCCCcCcceEEEeccHHHHHHHHHHhhhc---------CcchHHHhcccccchhHHHHHHHhcCCCCEEEEEe
Confidence 1123477899999999999999999765 89999999999999999999999999999999999
Q ss_pred CcccccCCCCeEEEEeCCCccceeecCCCCcccceeeecCHHhHHHhhcccCCC-CCcEEEEccChHHhhh
Q 006122 344 IAETSLTLEGIVYVVDSGFSKQRFYNPISDIENLVVAPISKASARQRAGRAGRV-RPGKCYRLYTEEYFVK 413 (660)
Q Consensus 344 i~e~Gidip~v~~VId~g~~k~~~~~~~~~~~~l~~~~~s~~~~~QR~GRaGR~-~~G~~~~l~~~~~~~~ 413 (660)
.+++|+|-|+|++||++.. +.+.+-|.|-.|||||. .+..|-..|++++.+.
T Consensus 314 SFGMGVDKp~VRFViHW~~------------------~qn~AgYYQESGRAGRDGk~SyCRLYYsR~D~~~ 366 (641)
T KOG0352|consen 314 SFGMGVDKPDVRFVIHWSP------------------SQNLAGYYQESGRAGRDGKRSYCRLYYSRQDKNA 366 (641)
T ss_pred ccccccCCcceeEEEecCc------------------hhhhHHHHHhccccccCCCccceeeeecccchHH
Confidence 9999999999999999655 77889999999999999 7788888888876654
No 82
>TIGR03714 secA2 accessory Sec system translocase SecA2. Members of this protein family are homologous to SecA and part of the accessory Sec system. This system, including both five core proteins for export and a variable number of proteins for glycosylation, operates in certain Gram-positive pathogens for the maturation and delivery of serine-rich glycoproteins such as the cell surface glycoprotein GspB in Streptococcus gordonii.
Probab=99.93 E-value=3.5e-24 Score=236.74 Aligned_cols=327 Identities=19% Similarity=0.258 Sum_probs=195.1
Q ss_pred hcCCCcHHHHHHHHHHHhcCCEEEEEcCCCCcHH--HHHHHHHHhccccCCCeEEEEeCchHHHHH--HHHHHHHHHhCC
Q 006122 46 RQRLPVYKYRTAILYLVETHATTIIVGETGSGKT--TQIPQYLKEAGWADGGRVIACTQPRRLAVQ--AVASRVAEEMGV 121 (660)
Q Consensus 46 ~~~lPi~~~~~~i~~~l~~~~~vii~apTGsGKT--~~ip~~l~~~~~~~~~~~i~v~p~r~la~~--~~~~~~~~~~~~ 121 (660)
++.+-+.+++.+++.++.-++-.|+.++||+||| +.+|.++... .+..+++++|.+.||.+ .+...+.+.+|.
T Consensus 64 ~R~lglrpydVQlig~l~l~~G~Iaem~TGeGKTLta~Lpa~l~aL---~g~~V~VVTpn~yLA~Rdae~m~~l~~~LGL 140 (762)
T TIGR03714 64 KRVLGMFPYDVQVLGAIVLHQGNIAEMKTGEGKTLTATMPLYLNAL---TGKGAMLVTTNDYLAKRDAEEMGPVYEWLGL 140 (762)
T ss_pred HhhcCCCccHHHHHHHHHhcCCceeEecCCcchHHHHHHHHHHHhh---cCCceEEeCCCHHHHHHHHHHHHHHHhhcCC
Confidence 4556666777777777666666799999999999 5566544322 34568999999999987 445567778888
Q ss_pred eeeeEEeeee--ecc---ccCCCCCceEEEechHHH-HHHHhc-------CCCCCCCcEEEEeCCCcCCcC---------
Q 006122 122 KVGEEVGYTI--RFE---DFTNKDLTAIKFLTDGVL-LREMMD-------DPLLTKYSVIMVDEAHERSIS--------- 179 (660)
Q Consensus 122 ~~~~~vg~~~--~~~---~~~~~~~~~I~v~T~~~l-l~~l~~-------~~~l~~~~~iIiDE~Her~~~--------- 179 (660)
.++..++... ... ..... .++|+|+||+.| .+.+.. ...+.++.++||||||...++
T Consensus 141 sv~~~~~~s~~~~~~~~~rr~~y-~~dIvygTp~~LgfDyLrD~l~~~~~~~~~r~l~~~IVDEaDsILiDeartpliis 219 (762)
T TIGR03714 141 TVSLGVVDDPDEEYDANEKRKIY-NSDIVYTTNSALGFDYLIDNLASNKEGKFLRPFNYVIVDEVDSVLLDSAQTPLVIS 219 (762)
T ss_pred cEEEEECCCCccccCHHHHHHhC-CCCEEEECchhhhhhHHHHHhhcchhhcccccCcEEEEecHhhHhhccCcCCeeee
Confidence 8876654311 111 11223 689999999999 343321 123788999999999932111
Q ss_pred ------hhHHHHHHHHHHHhcC--------CceEEEeecccchHHHHHHhhcCC--------------------------
Q 006122 180 ------TDILLGLLKKIQRCRS--------DLRLIISSATIEAKSMSAFFHARK-------------------------- 219 (660)
Q Consensus 180 ------~d~ll~~l~~~~~~~~--------~~kii~~SAT~~~~~~~~~~~~~~-------------------------- 219 (660)
+.+.....+.+....+ +-+-|.++-. ..+...++|+...
T Consensus 220 g~~~~~~~~y~~~~~~v~~l~~~~dy~~d~~~~~v~lt~~-G~~~~e~~~~~~~l~~~~~~~~~~~i~~al~A~~~~~~d 298 (762)
T TIGR03714 220 GAPRVQSNLYHIADTFVRTLKEDVDYIFKKDKKEVWLTDK-GIEKAEQYFKIDNLYSEEYFELVRHINLALRAHYLFKRN 298 (762)
T ss_pred CCCccchHHHHHHHHHHHhcCCCCCeEEEcCCCeeeecHh-HHHHHHHHcCCCccCChhhHHHHHHHHHHHHHHHHHhcC
Confidence 1111111111111111 1122222211 0111111111000
Q ss_pred C---------------------CCCCcc-----------cccCC-C----------------------------------
Q 006122 220 G---------------------RRGLEG-----------VELVP-R---------------------------------- 232 (660)
Q Consensus 220 ~---------------------~~~~~~-----------~~~~~-~---------------------------------- 232 (660)
+ ...|.. .+..+ .
T Consensus 299 ~dYiV~~~~v~ivD~~TGr~~~gr~~~~GLhQaieaKE~v~i~~e~~t~a~It~qn~Fr~Y~kl~GmTGTa~~~~~Ef~~ 378 (762)
T TIGR03714 299 KDYVVTNGEVVLLDRITGRLLEGTKLQSGIHQAIEAKEHVELSKETRAMASITYQNLFKMFNKLSGMTGTGKVAEKEFIE 378 (762)
T ss_pred CceEEECCEEEEEECCCCcCCCCCCcchHHHHHHHhhcCCCCCCCceeeeeeeHHHHHhhCchhcccCCCChhHHHHHHH
Confidence 0 000000 00000 0
Q ss_pred -CCCeEEEECCccccceEEecCC----CchhHHHHHHHHHHHHHhcCCCCcEEEEcCCHHHHHHHHHHHHHHhhhccCCC
Q 006122 233 -LEPAILSVEGRGFNVQIHYVEE----PVSDYVQAAVSTVLLIHDKEPPGDILVFLTGQDDIDATIQLLTEEARTSKKNS 307 (660)
Q Consensus 233 -~~~~~~~~~~~~~~v~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~iLVF~~~~~~i~~l~~~L~~~~~~~~~~~ 307 (660)
....++.+|... |+...-.++ ...+.....+..+...+ ..+.++||||++++.++.++..|.+.
T Consensus 379 iY~l~v~~IPt~k-p~~r~d~~d~i~~~~~~K~~ai~~~i~~~~--~~~~pvLIft~s~~~se~ls~~L~~~-------- 447 (762)
T TIGR03714 379 TYSLSVVKIPTNK-PIIRIDYPDKIYATLPEKLMATLEDVKEYH--ETGQPVLLITGSVEMSEIYSELLLRE-------- 447 (762)
T ss_pred HhCCCEEEcCCCC-CeeeeeCCCeEEECHHHHHHHHHHHHHHHh--hCCCCEEEEECcHHHHHHHHHHHHHC--------
Confidence 000122222211 111100000 01122333334443333 35678999999999999999999876
Q ss_pred CCeEEEEccCCCCHHHHhhhcCCCCCCCcEEEEeCCCcccccCCC---------CeEEEEeCCCccceeecCCCCcccce
Q 006122 308 SGLIILPLYSGLSRAEQEQVFSPTPRGKRKVVISTNIAETSLTLE---------GIVYVVDSGFSKQRFYNPISDIENLV 378 (660)
Q Consensus 308 ~~~~v~~lh~~l~~~~r~~v~~~f~~g~~~vlvaT~i~e~Gidip---------~v~~VId~g~~k~~~~~~~~~~~~l~ 378 (660)
++....+||.+...++..+.+.++.| +|+||||+|++|+||| ++.+|+.+..
T Consensus 448 -gi~~~~L~a~~~~~E~~ii~~ag~~g--~VlIATdmAgRGtDI~l~~~v~~~GGL~vIit~~~---------------- 508 (762)
T TIGR03714 448 -GIPHNLLNAQNAAKEAQIIAEAGQKG--AVTVATSMAGRGTDIKLGKGVAELGGLAVIGTERM---------------- 508 (762)
T ss_pred -CCCEEEecCCChHHHHHHHHHcCCCC--eEEEEccccccccCCCCCccccccCCeEEEEecCC----------------
Confidence 78889999999999998888888776 7999999999999999 9999998544
Q ss_pred eeecCHHhHHHhhcccCCC-CCcEEEEccChHH
Q 006122 379 VAPISKASARQRAGRAGRV-RPGKCYRLYTEEY 410 (660)
Q Consensus 379 ~~~~s~~~~~QR~GRaGR~-~~G~~~~l~~~~~ 410 (660)
|....+ .||+||+||. .+|.++.+++.++
T Consensus 509 --ps~rid-~qr~GRtGRqG~~G~s~~~is~eD 538 (762)
T TIGR03714 509 --ENSRVD-LQLRGRSGRQGDPGSSQFFVSLED 538 (762)
T ss_pred --CCcHHH-HHhhhcccCCCCceeEEEEEccch
Confidence 334444 8999999999 8999999988644
No 83
>PRK12898 secA preprotein translocase subunit SecA; Reviewed
Probab=99.93 E-value=3.9e-24 Score=233.76 Aligned_cols=106 Identities=25% Similarity=0.252 Sum_probs=91.6
Q ss_pred CCcEEEEcCCHHHHHHHHHHHHHHhhhccCCCCCeEEEEccCCCCHHHHhhhcCCCCCCCcEEEEeCCCcccccCCC---
Q 006122 276 PGDILVFLTGQDDIDATIQLLTEEARTSKKNSSGLIILPLYSGLSRAEQEQVFSPTPRGKRKVVISTNIAETSLTLE--- 352 (660)
Q Consensus 276 ~~~iLVF~~~~~~i~~l~~~L~~~~~~~~~~~~~~~v~~lh~~l~~~~r~~v~~~f~~g~~~vlvaT~i~e~Gidip--- 352 (660)
+.++||||++.+.++.+++.|.+. ++.+..+||.+...++..+...+ +..+|+||||++++|+||+
T Consensus 473 ~~pvLIft~t~~~se~L~~~L~~~---------gi~~~~Lhg~~~~rE~~ii~~ag--~~g~VlVATdmAgRGtDI~l~~ 541 (656)
T PRK12898 473 GRPVLVGTRSVAASERLSALLREA---------GLPHQVLNAKQDAEEAAIVARAG--QRGRITVATNMAGRGTDIKLEP 541 (656)
T ss_pred CCCEEEEeCcHHHHHHHHHHHHHC---------CCCEEEeeCCcHHHHHHHHHHcC--CCCcEEEEccchhcccCcCCcc
Confidence 467999999999999999999876 88999999997766665555544 4457999999999999999
Q ss_pred CeE-----EEEeCCCccceeecCCCCcccceeeecCHHhHHHhhcccCCC-CCcEEEEccChHH
Q 006122 353 GIV-----YVVDSGFSKQRFYNPISDIENLVVAPISKASARQRAGRAGRV-RPGKCYRLYTEEY 410 (660)
Q Consensus 353 ~v~-----~VId~g~~k~~~~~~~~~~~~l~~~~~s~~~~~QR~GRaGR~-~~G~~~~l~~~~~ 410 (660)
+|. +||++++ |.|...|.||+||+||. .+|.++.+++.++
T Consensus 542 ~V~~~GGLhVI~~d~------------------P~s~r~y~hr~GRTGRqG~~G~s~~~is~eD 587 (656)
T PRK12898 542 GVAARGGLHVILTER------------------HDSARIDRQLAGRCGRQGDPGSYEAILSLED 587 (656)
T ss_pred chhhcCCCEEEEcCC------------------CCCHHHHHHhcccccCCCCCeEEEEEechhH
Confidence 776 9999887 88999999999999999 8999999998644
No 84
>PRK09200 preprotein translocase subunit SecA; Reviewed
Probab=99.93 E-value=1.8e-24 Score=241.38 Aligned_cols=107 Identities=22% Similarity=0.263 Sum_probs=96.8
Q ss_pred CCCcEEEEcCCHHHHHHHHHHHHHHhhhccCCCCCeEEEEccCCCCHHHHhhhcCCCCCCCcEEEEeCCCcccccCC---
Q 006122 275 PPGDILVFLTGQDDIDATIQLLTEEARTSKKNSSGLIILPLYSGLSRAEQEQVFSPTPRGKRKVVISTNIAETSLTL--- 351 (660)
Q Consensus 275 ~~~~iLVF~~~~~~i~~l~~~L~~~~~~~~~~~~~~~v~~lh~~l~~~~r~~v~~~f~~g~~~vlvaT~i~e~Gidi--- 351 (660)
.+.++||||+|.+.++.++..|.+. ++.+..+||.+...++..+...+..| +|+||||+|++|+||
T Consensus 427 ~~~pvLIf~~t~~~se~l~~~L~~~---------gi~~~~L~~~~~~~e~~~i~~ag~~g--~VlIATdmAgRG~DI~l~ 495 (790)
T PRK09200 427 TGRPVLIGTGSIEQSETFSKLLDEA---------GIPHNLLNAKNAAKEAQIIAEAGQKG--AVTVATNMAGRGTDIKLG 495 (790)
T ss_pred cCCCEEEEeCcHHHHHHHHHHHHHC---------CCCEEEecCCccHHHHHHHHHcCCCC--eEEEEccchhcCcCCCcc
Confidence 4678999999999999999999876 78899999999998888888887766 799999999999999
Q ss_pred CCeE-----EEEeCCCccceeecCCCCcccceeeecCHHhHHHhhcccCCC-CCcEEEEccChHH
Q 006122 352 EGIV-----YVVDSGFSKQRFYNPISDIENLVVAPISKASARQRAGRAGRV-RPGKCYRLYTEEY 410 (660)
Q Consensus 352 p~v~-----~VId~g~~k~~~~~~~~~~~~l~~~~~s~~~~~QR~GRaGR~-~~G~~~~l~~~~~ 410 (660)
|+|. +||++++ |.|...|.||+||+||. .+|.++.+++.++
T Consensus 496 ~~V~~~GGL~VI~~d~------------------p~s~r~y~qr~GRtGR~G~~G~s~~~is~eD 542 (790)
T PRK09200 496 EGVHELGGLAVIGTER------------------MESRRVDLQLRGRSGRQGDPGSSQFFISLED 542 (790)
T ss_pred cccccccCcEEEeccC------------------CCCHHHHHHhhccccCCCCCeeEEEEEcchH
Confidence 7998 9999887 88999999999999999 8999999888543
No 85
>COG4098 comFA Superfamily II DNA/RNA helicase required for DNA uptake (late competence protein) [DNA replication, recombination, and repair]
Probab=99.93 E-value=6.3e-24 Score=206.43 Aligned_cols=284 Identities=19% Similarity=0.220 Sum_probs=193.7
Q ss_pred HHHHHHHhcCCEEEEEcCCCCcHHHHHHHHHHhccccCCCeEEEEeCchHHHHHHHHHHHHHHhC-CeeeeEEeeeeecc
Q 006122 56 TAILYLVETHATTIIVGETGSGKTTQIPQYLKEAGWADGGRVIACTQPRRLAVQAVASRVAEEMG-VKVGEEVGYTIRFE 134 (660)
Q Consensus 56 ~~i~~~l~~~~~vii~apTGsGKT~~ip~~l~~~~~~~~~~~i~v~p~r~la~~~~~~~~~~~~~-~~~~~~vg~~~~~~ 134 (660)
..+++.+.+.+..+|.|-||+|||..+-+-+... ... +..|.++.||--...+++.|+...+. +.+....|.+.
T Consensus 107 ~~l~q~i~~k~~~lv~AV~GaGKTEMif~~i~~a-l~~-G~~vciASPRvDVclEl~~Rlk~aF~~~~I~~Lyg~S~--- 181 (441)
T COG4098 107 NQLVQYIKQKEDTLVWAVTGAGKTEMIFQGIEQA-LNQ-GGRVCIASPRVDVCLELYPRLKQAFSNCDIDLLYGDSD--- 181 (441)
T ss_pred HHHHHHHHhcCcEEEEEecCCCchhhhHHHHHHH-Hhc-CCeEEEecCcccchHHHHHHHHHhhccCCeeeEecCCc---
Confidence 4456777888999999999999995555444333 223 34678888888888899999988775 77777777322
Q ss_pred ccCCCCCceEEEechHHHHHHHhcCCCCCCCcEEEEeCCCcCCcChhHHHHH-HHHHHHhcCCceEEEeecccchHHHHH
Q 006122 135 DFTNKDLTAIKFLTDGVLLREMMDDPLLTKYSVIMVDEAHERSISTDILLGL-LKKIQRCRSDLRLIISSATIEAKSMSA 213 (660)
Q Consensus 135 ~~~~~~~~~I~v~T~~~ll~~l~~~~~l~~~~~iIiDE~Her~~~~d~ll~~-l~~~~~~~~~~kii~~SAT~~~~~~~~ 213 (660)
... .+.++|+|...|++. -..++++||||++..-...|-.+.. ++.. ..+.--+|.+|||+.-+.-.+
T Consensus 182 --~~f-r~plvVaTtHQLlrF------k~aFD~liIDEVDAFP~~~d~~L~~Av~~a--rk~~g~~IylTATp~k~l~r~ 250 (441)
T COG4098 182 --SYF-RAPLVVATTHQLLRF------KQAFDLLIIDEVDAFPFSDDQSLQYAVKKA--RKKEGATIYLTATPTKKLERK 250 (441)
T ss_pred --hhc-cccEEEEehHHHHHH------HhhccEEEEeccccccccCCHHHHHHHHHh--hcccCceEEEecCChHHHHHH
Confidence 223 578999999999986 3468999999999766555544443 3332 223455899999986554444
Q ss_pred HhhcCCCCCCCcccccCCCCCCeEEEECCccc----cceE-EecCCCchhHHHH--HHHHHHHHHh--cCCCCcEEEEcC
Q 006122 214 FFHARKGRRGLEGVELVPRLEPAILSVEGRGF----NVQI-HYVEEPVSDYVQA--AVSTVLLIHD--KEPPGDILVFLT 284 (660)
Q Consensus 214 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~v~~-~~~~~~~~~~~~~--~~~~~~~~~~--~~~~~~iLVF~~ 284 (660)
...+.. ..+.++.|.+ |+.. .|.... ...+.. .-..+..+.. ...+.++|||+|
T Consensus 251 ~~~g~~----------------~~~klp~RfH~~pLpvPkf~w~~~~-~k~l~r~kl~~kl~~~lekq~~~~~P~liF~p 313 (441)
T COG4098 251 ILKGNL----------------RILKLPARFHGKPLPVPKFVWIGNW-NKKLQRNKLPLKLKRWLEKQRKTGRPVLIFFP 313 (441)
T ss_pred hhhCCe----------------eEeecchhhcCCCCCCCceEEeccH-HHHhhhccCCHHHHHHHHHHHhcCCcEEEEec
Confidence 333221 1344544432 2222 222221 112211 0011222221 134578999999
Q ss_pred CHHHHHHHHHHHHHHhhhccCCCCCeEEEEccCCCCHHHHhhhcCCCCCCCcEEEEeCCCcccccCCCCeEEEEeCCCcc
Q 006122 285 GQDDIDATIQLLTEEARTSKKNSSGLIILPLYSGLSRAEQEQVFSPTPRGKRKVVISTNIAETSLTLEGIVYVVDSGFSK 364 (660)
Q Consensus 285 ~~~~i~~l~~~L~~~~~~~~~~~~~~~v~~lh~~l~~~~r~~v~~~f~~g~~~vlvaT~i~e~Gidip~v~~VId~g~~k 364 (660)
+.+..++++..|++.+ +...+...||. ...|.+..+.|++|+.++|++|.|+|+|+|+|+|+++|-
T Consensus 314 ~I~~~eq~a~~lk~~~-------~~~~i~~Vhs~--d~~R~EkV~~fR~G~~~lLiTTTILERGVTfp~vdV~Vl----- 379 (441)
T COG4098 314 EIETMEQVAAALKKKL-------PKETIASVHSE--DQHRKEKVEAFRDGKITLLITTTILERGVTFPNVDVFVL----- 379 (441)
T ss_pred chHHHHHHHHHHHhhC-------Cccceeeeecc--CccHHHHHHHHHcCceEEEEEeehhhcccccccceEEEe-----
Confidence 9999999999997764 35677888887 456788889999999999999999999999999998772
Q ss_pred ceeecCCCCcccceeeecCHHhHHHhhcccCCC
Q 006122 365 QRFYNPISDIENLVVAPISKASARQRAGRAGRV 397 (660)
Q Consensus 365 ~~~~~~~~~~~~l~~~~~s~~~~~QR~GRaGR~ 397 (660)
++... -.+.+...|.+||+||.
T Consensus 380 ----gaeh~-------vfTesaLVQIaGRvGRs 401 (441)
T COG4098 380 ----GAEHR-------VFTESALVQIAGRVGRS 401 (441)
T ss_pred ----cCCcc-------cccHHHHHHHhhhccCC
Confidence 22222 35788999999999998
No 86
>KOG0351 consensus ATP-dependent DNA helicase [Replication, recombination and repair]
Probab=99.93 E-value=1.6e-25 Score=253.23 Aligned_cols=313 Identities=18% Similarity=0.186 Sum_probs=220.7
Q ss_pred cHHHHHHHHHHHhcCCEEEEEcCCCCcHH--HHHHHHHHhccccCCCeEEEEeCchHHHHHHHHHHHHHHhCCeeeeEEe
Q 006122 51 VYKYRTAILYLVETHATTIIVGETGSGKT--TQIPQYLKEAGWADGGRVIACTQPRRLAVQAVASRVAEEMGVKVGEEVG 128 (660)
Q Consensus 51 i~~~~~~i~~~l~~~~~vii~apTGsGKT--~~ip~~l~~~~~~~~~~~i~v~p~r~la~~~~~~~~~~~~~~~~~~~vg 128 (660)
....|.+++.++..|+.++|..|||.||| +|+|.++... -.|+|.|...|...++... ...++......+
T Consensus 265 FR~~Q~eaI~~~l~Gkd~fvlmpTG~GKSLCYQlPA~l~~g------itvVISPL~SLm~DQv~~L--~~~~I~a~~L~s 336 (941)
T KOG0351|consen 265 FRPNQLEAINATLSGKDCFVLMPTGGGKSLCYQLPALLLGG------VTVVISPLISLMQDQVTHL--SKKGIPACFLSS 336 (941)
T ss_pred CChhHHHHHHHHHcCCceEEEeecCCceeeEeeccccccCC------ceEEeccHHHHHHHHHHhh--hhcCcceeeccc
Confidence 44557778889999999999999999999 9999776543 4688999998888877664 334454444444
Q ss_pred eeeecc-----ccCCC--CCceEEEechHHHHHHHh---cCCCCCC---CcEEEEeCCCcCCcCh-hHHHHH--HHHHHH
Q 006122 129 YTIRFE-----DFTNK--DLTAIKFLTDGVLLREMM---DDPLLTK---YSVIMVDEAHERSIST-DILLGL--LKKIQR 192 (660)
Q Consensus 129 ~~~~~~-----~~~~~--~~~~I~v~T~~~ll~~l~---~~~~l~~---~~~iIiDE~Her~~~~-d~ll~~--l~~~~~ 192 (660)
.+..-+ ..... ...+|+|+||+.+...-. ....+.. +..+||||||.-+-+. ||...+ +..+..
T Consensus 337 ~q~~~~~~~i~q~l~~~~~~ikilYvtPE~v~~~~~l~~~~~~L~~~~~lal~vIDEAHCVSqWgHdFRp~Yk~l~~l~~ 416 (941)
T KOG0351|consen 337 IQTAAERLAILQKLANGNPIIKILYVTPEKVVASEGLLESLADLYARGLLALFVIDEAHCVSQWGHDFRPSYKRLGLLRI 416 (941)
T ss_pred cccHHHHHHHHHHHhCCCCeEEEEEeCHHHhhcccchhhHHHhccCCCeeEEEEecHHHHhhhhcccccHHHHHHHHHHh
Confidence 322211 11111 168999999998765321 1111333 8899999999655333 444333 333455
Q ss_pred hcCCceEEEeecccchHHHHHHhhcCCCCCCCcccccCCCCCCeEEEECCccccceEEecCCCchhHHHHHHHHHHHHHh
Q 006122 193 CRSDLRLIISSATIEAKSMSAFFHARKGRRGLEGVELVPRLEPAILSVEGRGFNVQIHYVEEPVSDYVQAAVSTVLLIHD 272 (660)
Q Consensus 193 ~~~~~kii~~SAT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~ 272 (660)
..+...+|+++||.....-.+......... +.++...-. +...+|.-.+..+ ..........+..
T Consensus 417 ~~~~vP~iALTATAT~~v~~DIi~~L~l~~------------~~~~~~sfn--R~NL~yeV~~k~~-~~~~~~~~~~~~~ 481 (941)
T KOG0351|consen 417 RFPGVPFIALTATATERVREDVIRSLGLRN------------PELFKSSFN--RPNLKYEVSPKTD-KDALLDILEESKL 481 (941)
T ss_pred hCCCCCeEEeehhccHHHHHHHHHHhCCCC------------cceecccCC--CCCceEEEEeccC-ccchHHHHHHhhh
Confidence 667789999999996554444444322110 001111111 1111111111110 1122233333444
Q ss_pred cCCCCcEEEEcCCHHHHHHHHHHHHHHhhhccCCCCCeEEEEccCCCCHHHHhhhcCCCCCCCcEEEEeCCCcccccCCC
Q 006122 273 KEPPGDILVFLTGQDDIDATIQLLTEEARTSKKNSSGLIILPLYSGLSRAEQEQVFSPTPRGKRKVVISTNIAETSLTLE 352 (660)
Q Consensus 273 ~~~~~~iLVF~~~~~~i~~l~~~L~~~~~~~~~~~~~~~v~~lh~~l~~~~r~~v~~~f~~g~~~vlvaT~i~e~Gidip 352 (660)
..+.+.+||||.++.+++.++..|++. +....+||+||++.+|..|.+.|-.++.+|||||=++++|||.|
T Consensus 482 ~~~~~s~IIYC~sr~~ce~vs~~L~~~---------~~~a~~YHAGl~~~~R~~Vq~~w~~~~~~VivATVAFGMGIdK~ 552 (941)
T KOG0351|consen 482 RHPDQSGIIYCLSRKECEQVSAVLRSL---------GKSAAFYHAGLPPKERETVQKAWMSDKIRVIVATVAFGMGIDKP 552 (941)
T ss_pred cCCCCCeEEEeCCcchHHHHHHHHHHh---------chhhHhhhcCCCHHHHHHHHHHHhcCCCeEEEEEeeccCCCCCC
Confidence 567788999999999999999999887 68899999999999999999999999999999999999999999
Q ss_pred CeEEEEeCCCccceeecCCCCcccceeeecCHHhHHHhhcccCCC-CCcEEEEccChHHhhh
Q 006122 353 GIVYVVDSGFSKQRFYNPISDIENLVVAPISKASARQRAGRAGRV-RPGKCYRLYTEEYFVK 413 (660)
Q Consensus 353 ~v~~VId~g~~k~~~~~~~~~~~~l~~~~~s~~~~~QR~GRaGR~-~~G~~~~l~~~~~~~~ 413 (660)
+|+.||++++ |-|...|.|-+|||||. .+..|..+|+.+++..
T Consensus 553 DVR~ViH~~l------------------Pks~E~YYQE~GRAGRDG~~s~C~l~y~~~D~~~ 596 (941)
T KOG0351|consen 553 DVRFVIHYSL------------------PKSFEGYYQEAGRAGRDGLPSSCVLLYGYADISE 596 (941)
T ss_pred ceeEEEECCC------------------chhHHHHHHhccccCcCCCcceeEEecchhHHHH
Confidence 9999999999 99999999999999999 8889999999887655
No 87
>TIGR00603 rad25 DNA repair helicase rad25. All proteins in this family for which functions are known are DNA-DNA helicases used for the initiation of nucleotide excision repair and transacription as part of the TFIIH complex.This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=99.93 E-value=2.3e-24 Score=238.17 Aligned_cols=317 Identities=13% Similarity=0.101 Sum_probs=185.6
Q ss_pred CCcHHHHHHHHHHHhcC---CEEEEEcCCCCcHHHHHHHHHHhccccCCCeEEEEeCchHHHHHHHHHHHHHHhCC---e
Q 006122 49 LPVYKYRTAILYLVETH---ATTIIVGETGSGKTTQIPQYLKEAGWADGGRVIACTQPRRLAVQAVASRVAEEMGV---K 122 (660)
Q Consensus 49 lPi~~~~~~i~~~l~~~---~~vii~apTGsGKT~~ip~~l~~~~~~~~~~~i~v~p~r~la~~~~~~~~~~~~~~---~ 122 (660)
..+..+|++.++++..+ +..+|+.|||+|||.+.-..+... +.++++++|... ...++.+.+.+.... .
T Consensus 254 ~~LRpYQ~eAl~~~~~~gr~r~GIIvLPtGaGKTlvai~aa~~l----~k~tLILvps~~-Lv~QW~~ef~~~~~l~~~~ 328 (732)
T TIGR00603 254 TQIRPYQEKSLSKMFGNGRARSGIIVLPCGAGKSLVGVTAACTV----KKSCLVLCTSAV-SVEQWKQQFKMWSTIDDSQ 328 (732)
T ss_pred CCcCHHHHHHHHHHHhcCCCCCcEEEeCCCCChHHHHHHHHHHh----CCCEEEEeCcHH-HHHHHHHHHHHhcCCCCce
Confidence 44788999998887643 367999999999995554443332 245677776654 455666666666543 3
Q ss_pred eeeEEeeeeeccccCCCCCceEEEechHHHHHHHhcC-------CC--CCCCcEEEEeCCCcCCcChhHHHHHHHHHHHh
Q 006122 123 VGEEVGYTIRFEDFTNKDLTAIKFLTDGVLLREMMDD-------PL--LTKYSVIMVDEAHERSISTDILLGLLKKIQRC 193 (660)
Q Consensus 123 ~~~~vg~~~~~~~~~~~~~~~I~v~T~~~ll~~l~~~-------~~--l~~~~~iIiDE~Her~~~~d~ll~~l~~~~~~ 193 (660)
++...|.. ...... ...|+|+|++++....... .. -..+++||+||||. ... ...+.+...
T Consensus 329 I~~~tg~~---k~~~~~-~~~VvVtTYq~l~~~~~r~~~~~~~l~~l~~~~~gLII~DEvH~-lpA-----~~fr~il~~ 398 (732)
T TIGR00603 329 ICRFTSDA---KERFHG-EAGVVVSTYSMVAHTGKRSYESEKVMEWLTNREWGLILLDEVHV-VPA-----AMFRRVLTI 398 (732)
T ss_pred EEEEecCc---cccccc-CCcEEEEEHHHhhcccccchhhhHHHHHhccccCCEEEEEcccc-ccH-----HHHHHHHHh
Confidence 33333321 111111 4689999999875322111 11 24789999999994 322 223333332
Q ss_pred cCCceEEEeecccc--hH---HHHHHhhcCCCCCCCcccccCCCCCCe---EEEECCccccceEEecCCCchh-------
Q 006122 194 RSDLRLIISSATIE--AK---SMSAFFHARKGRRGLEGVELVPRLEPA---ILSVEGRGFNVQIHYVEEPVSD------- 258 (660)
Q Consensus 194 ~~~~kii~~SAT~~--~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~v~~~~~~~~~~~------- 258 (660)
......+++|||+. -+ .+..+++......+|..........+. .+.++-... .-..|+......
T Consensus 399 l~a~~RLGLTATP~ReD~~~~~L~~LiGP~vye~~~~eLi~~G~LA~~~~~ev~v~~t~~-~~~~yl~~~~~~k~~l~~~ 477 (732)
T TIGR00603 399 VQAHCKLGLTATLVREDDKITDLNFLIGPKLYEANWMELQKKGFIANVQCAEVWCPMTPE-FYREYLRENSRKRMLLYVM 477 (732)
T ss_pred cCcCcEEEEeecCcccCCchhhhhhhcCCeeeecCHHHHHhCCccccceEEEEEecCCHH-HHHHHHHhcchhhhHHhhh
Confidence 23445799999992 11 222333322111111111101100000 001100000 000001000000
Q ss_pred --HHHHHHHHHHHHHhcCCCCcEEEEcCCHHHHHHHHHHHHHHhhhccCCCCCeEEEEccCCCCHHHHhhhcCCCCCC-C
Q 006122 259 --YVQAAVSTVLLIHDKEPPGDILVFLTGQDDIDATIQLLTEEARTSKKNSSGLIILPLYSGLSRAEQEQVFSPTPRG-K 335 (660)
Q Consensus 259 --~~~~~~~~~~~~~~~~~~~~iLVF~~~~~~i~~l~~~L~~~~~~~~~~~~~~~v~~lh~~l~~~~r~~v~~~f~~g-~ 335 (660)
..-.++..++..+. ..+.++||||.....++.+++.| + +..+||+++..+|.++++.|++| .
T Consensus 478 np~K~~~~~~Li~~he-~~g~kiLVF~~~~~~l~~~a~~L------------~--~~~I~G~ts~~ER~~il~~Fr~~~~ 542 (732)
T TIGR00603 478 NPNKFRACQFLIRFHE-QRGDKIIVFSDNVFALKEYAIKL------------G--KPFIYGPTSQQERMQILQNFQHNPK 542 (732)
T ss_pred ChHHHHHHHHHHHHHh-hcCCeEEEEeCCHHHHHHHHHHc------------C--CceEECCCCHHHHHHHHHHHHhCCC
Confidence 00011122333332 35678999999998888877766 1 34589999999999999999865 7
Q ss_pred cEEEEeCCCcccccCCCCeEEEEeCCCccceeecCCCCcccceeeecCHHhHHHhhcccCCCCC-cEE-------EEccC
Q 006122 336 RKVVISTNIAETSLTLEGIVYVVDSGFSKQRFYNPISDIENLVVAPISKASARQRAGRAGRVRP-GKC-------YRLYT 407 (660)
Q Consensus 336 ~~vlvaT~i~e~Gidip~v~~VId~g~~k~~~~~~~~~~~~l~~~~~s~~~~~QR~GRaGR~~~-G~~-------~~l~~ 407 (660)
.++||+|+++.+|||+|++++||.... . +-|..+|.||+||++|.++ |.+ |.|++
T Consensus 543 i~vLv~SkVgdeGIDlP~a~vvI~~s~--------~---------~gS~~q~iQRlGRilR~~~~~~~~~~~A~fY~lVs 605 (732)
T TIGR00603 543 VNTIFLSKVGDTSIDLPEANVLIQISS--------H---------YGSRRQEAQRLGRILRAKKGSDAEEYNAFFYSLVS 605 (732)
T ss_pred ccEEEEecccccccCCCCCCEEEEeCC--------C---------CCCHHHHHHHhcccccCCCCCccccccceEEEEec
Confidence 899999999999999999999997332 1 2488999999999999954 343 88888
Q ss_pred hHHhhh
Q 006122 408 EEYFVK 413 (660)
Q Consensus 408 ~~~~~~ 413 (660)
++..+.
T Consensus 606 ~dT~E~ 611 (732)
T TIGR00603 606 KDTQEM 611 (732)
T ss_pred CCchHH
Confidence 765443
No 88
>PRK14701 reverse gyrase; Provisional
Probab=99.92 E-value=1.1e-24 Score=261.12 Aligned_cols=314 Identities=18% Similarity=0.115 Sum_probs=195.3
Q ss_pred CcHHHHHHHHHHHhcCCEEEEEcCCCCcHHH-HHHHHHHhccccCCCeEEEEeCchHHHHHHHHH--HHHHHhC--Ceee
Q 006122 50 PVYKYRTAILYLVETHATTIIVGETGSGKTT-QIPQYLKEAGWADGGRVIACTQPRRLAVQAVAS--RVAEEMG--VKVG 124 (660)
Q Consensus 50 Pi~~~~~~i~~~l~~~~~vii~apTGsGKT~-~ip~~l~~~~~~~~~~~i~v~p~r~la~~~~~~--~~~~~~~--~~~~ 124 (660)
..+..|.+++..+..+++++++||||||||+ .++..+... ..+.++++++|+++|+.|.+.. .++...+ ..+.
T Consensus 79 ~pt~iQ~~~i~~il~G~d~li~APTGsGKTl~~~~~al~~~--~~g~~aLVl~PTreLa~Qi~~~l~~l~~~~~~~v~v~ 156 (1638)
T PRK14701 79 EFWSIQKTWAKRILRGKSFSIVAPTGMGKSTFGAFIALFLA--LKGKKCYIILPTTLLVKQTVEKIESFCEKANLDVRLV 156 (1638)
T ss_pred CCCHHHHHHHHHHHcCCCEEEEEcCCCCHHHHHHHHHHHHH--hcCCeEEEEECHHHHHHHHHHHHHHHHhhcCCceeEE
Confidence 5667788888888888999999999999995 222222221 2456789999999999885433 3334433 2333
Q ss_pred eEEeeeeeccc-----cCCCCCceEEEechHHHHHHHhcCCCCCCCcEEEEeCCCcCCc---------C-hhHHHHHHH-
Q 006122 125 EEVGYTIRFED-----FTNKDLTAIKFLTDGVLLREMMDDPLLTKYSVIMVDEAHERSI---------S-TDILLGLLK- 188 (660)
Q Consensus 125 ~~vg~~~~~~~-----~~~~~~~~I~v~T~~~ll~~l~~~~~l~~~~~iIiDE~Her~~---------~-~d~ll~~l~- 188 (660)
...|.....+. ....+..+|+|+||+.|.+.+..-. ..++++|||||||...- . .+|...+..
T Consensus 157 ~~~g~~s~~e~~~~~~~l~~g~~dILV~TPgrL~~~~~~l~-~~~i~~iVVDEAD~ml~~~knid~~L~llGF~~e~~~~ 235 (1638)
T PRK14701 157 YYHSNLRKKEKEEFLERIENGDFDILVTTAQFLARNFPEMK-HLKFDFIFVDDVDAFLKASKNIDRSLQLLGFYEEIIEK 235 (1638)
T ss_pred EEeCCCCHHHHHHHHHHHhcCCCCEEEECCchhHHhHHHHh-hCCCCEEEEECceeccccccccchhhhcCCChHHHHHH
Confidence 33342211111 1112258999999999887654321 26799999999994321 1 233222222
Q ss_pred ---HH---------------------H-HhcCCce-EEEeecccch-HHHHHHhhcCCCCCCCcccccCCCCCCeEEEEC
Q 006122 189 ---KI---------------------Q-RCRSDLR-LIISSATIEA-KSMSAFFHARKGRRGLEGVELVPRLEPAILSVE 241 (660)
Q Consensus 189 ---~~---------------------~-~~~~~~k-ii~~SAT~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 241 (660)
.+ . ...+..+ ++++|||++. .....+|.... .+.+.
T Consensus 236 ~~~il~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~ll~~SAT~~~r~~~~~l~~~~l-----------------~f~v~ 298 (1638)
T PRK14701 236 AWKIIYLKKQGNIEDAMEKREILNKEIEKIGNKIGCLIVASATGKAKGDRVKLYRELL-----------------GFEVG 298 (1638)
T ss_pred HHHhhhcccccccchhhhhhhhhhhhhhhcCCCccEEEEEecCCCchhHHHHHhhcCe-----------------EEEec
Confidence 11 0 1122334 5779999965 34555664322 23332
Q ss_pred Ccc---ccceEEecCCCchhHHHHHHHHHHHHHhcCCCCcEEEEcCCHHHH---HHHHHHHHHHhhhccCCCCCeEEEEc
Q 006122 242 GRG---FNVQIHYVEEPVSDYVQAAVSTVLLIHDKEPPGDILVFLTGQDDI---DATIQLLTEEARTSKKNSSGLIILPL 315 (660)
Q Consensus 242 ~~~---~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iLVF~~~~~~i---~~l~~~L~~~~~~~~~~~~~~~v~~l 315 (660)
... ..+...|......+ .. .+..+.... +...||||++++.+ +.+++.|.+. ++.+..+
T Consensus 299 ~~~~~lr~i~~~yi~~~~~~-k~----~L~~ll~~~-g~~gIVF~~t~~~~e~ae~la~~L~~~---------Gi~a~~~ 363 (1638)
T PRK14701 299 SGRSALRNIVDVYLNPEKII-KE----HVRELLKKL-GKGGLIFVPIDEGAEKAEEIEKYLLED---------GFKIELV 363 (1638)
T ss_pred CCCCCCCCcEEEEEECCHHH-HH----HHHHHHHhC-CCCeEEEEeccccchHHHHHHHHHHHC---------CCeEEEe
Confidence 222 23444444322121 11 222333322 35699999998764 7889988775 8999999
Q ss_pred cCCCCHHHHhhhcCCCCCCCcEEEEeC----CCcccccCCCC-eEEEEeCCCcccee----ecCCCCcccceeeecCHHh
Q 006122 316 YSGLSRAEQEQVFSPTPRGKRKVVIST----NIAETSLTLEG-IVYVVDSGFSKQRF----YNPISDIENLVVAPISKAS 386 (660)
Q Consensus 316 h~~l~~~~r~~v~~~f~~g~~~vlvaT----~i~e~Gidip~-v~~VId~g~~k~~~----~~~~~~~~~l~~~~~s~~~ 386 (660)
||+ |..+++.|++|+.+||||| +++++|||+|+ |+|||++|+.|-+. |...... + +. ...
T Consensus 364 h~~-----R~~~l~~F~~G~~~VLVaT~s~~gvaaRGIDiP~~Vryvi~~~~Pk~~~~~e~~~~~~~~--~---~~-~~~ 432 (1638)
T PRK14701 364 SAK-----NKKGFDLFEEGEIDYLIGVATYYGTLVRGLDLPERIRFAVFYGVPKFRFRVDLEDPTIYR--I---LG-LLS 432 (1638)
T ss_pred cch-----HHHHHHHHHcCCCCEEEEecCCCCeeEecCccCCccCEEEEeCCCCCCcchhhcccchhh--h---hc-chH
Confidence 985 8889999999999999999 59999999999 99999999977331 1111110 0 01 234
Q ss_pred HHHhhcccCCC-CCcEEEEccChH
Q 006122 387 ARQRAGRAGRV-RPGKCYRLYTEE 409 (660)
Q Consensus 387 ~~QR~GRaGR~-~~G~~~~l~~~~ 409 (660)
..++.|||||. .++.|+..+..+
T Consensus 433 ~~~~~~~a~~~g~~~~~~~~~~~~ 456 (1638)
T PRK14701 433 EILKIEEELKEGIPIEGVLDVFPE 456 (1638)
T ss_pred HHHHhhhhcccCCcchhHHHhHHH
Confidence 55788999998 677676444433
No 89
>PRK05580 primosome assembly protein PriA; Validated
Probab=99.92 E-value=6.4e-24 Score=239.70 Aligned_cols=316 Identities=19% Similarity=0.199 Sum_probs=198.6
Q ss_pred CCCcHHHHHHHHHHHhc---CCEEEEEcCCCCcHHHHHHHHHHhccccCCCeEEEEeCchHHHHHHHHHHHHHHhCCeee
Q 006122 48 RLPVYKYRTAILYLVET---HATTIIVGETGSGKTTQIPQYLKEAGWADGGRVIACTQPRRLAVQAVASRVAEEMGVKVG 124 (660)
Q Consensus 48 ~lPi~~~~~~i~~~l~~---~~~vii~apTGsGKT~~ip~~l~~~~~~~~~~~i~v~p~r~la~~~~~~~~~~~~~~~~~ 124 (660)
...+...|.++++.+.+ ++++++.|+||||||......+... ...+.++++++|+++|+.|. .+++.+.++..+.
T Consensus 142 ~~~Lt~~Q~~ai~~i~~~~~~~~~Ll~~~TGSGKT~v~l~~i~~~-l~~g~~vLvLvPt~~L~~Q~-~~~l~~~fg~~v~ 219 (679)
T PRK05580 142 PPTLNPEQAAAVEAIRAAAGFSPFLLDGVTGSGKTEVYLQAIAEV-LAQGKQALVLVPEIALTPQM-LARFRARFGAPVA 219 (679)
T ss_pred CCCCCHHHHHHHHHHHhccCCCcEEEECCCCChHHHHHHHHHHHH-HHcCCeEEEEeCcHHHHHHH-HHHHHHHhCCCEE
Confidence 34577888888888876 4789999999999994443333332 23456789999999998764 5566677787777
Q ss_pred eEEeeeeeccc-----cCCCCCceEEEechHHHHHHHhcCCCCCCCcEEEEeCCCcCCcChhHH----HHHHHHHHHhcC
Q 006122 125 EEVGYTIRFED-----FTNKDLTAIKFLTDGVLLREMMDDPLLTKYSVIMVDEAHERSISTDIL----LGLLKKIQRCRS 195 (660)
Q Consensus 125 ~~vg~~~~~~~-----~~~~~~~~I~v~T~~~ll~~l~~~~~l~~~~~iIiDE~Her~~~~d~l----l~~l~~~~~~~~ 195 (660)
...|.....+. ....+..+|+|+|++.+.. .+.++++|||||+|+-+...+-. ..-+........
T Consensus 220 ~~~s~~s~~~r~~~~~~~~~g~~~IVVgTrsal~~------p~~~l~liVvDEeh~~s~~~~~~p~y~~r~va~~ra~~~ 293 (679)
T PRK05580 220 VLHSGLSDGERLDEWRKAKRGEAKVVIGARSALFL------PFKNLGLIIVDEEHDSSYKQQEGPRYHARDLAVVRAKLE 293 (679)
T ss_pred EEECCCCHHHHHHHHHHHHcCCCCEEEeccHHhcc------cccCCCEEEEECCCccccccCcCCCCcHHHHHHHHhhcc
Confidence 76664322111 1112257999999987642 26789999999999654332210 011122233456
Q ss_pred CceEEEeecccchHHHHHHhhcCCCCCCCcccccCCCCCCeEEEECCccc---cceEEecCCCc-------hhHHHHHHH
Q 006122 196 DLRLIISSATIEAKSMSAFFHARKGRRGLEGVELVPRLEPAILSVEGRGF---NVQIHYVEEPV-------SDYVQAAVS 265 (660)
Q Consensus 196 ~~kii~~SAT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~v~~~~~~~~~-------~~~~~~~~~ 265 (660)
+.++|++|||++.+.+.....+.. ..+.+..+.. ..++...+... ......++.
T Consensus 294 ~~~~il~SATps~~s~~~~~~g~~----------------~~~~l~~r~~~~~~p~v~~id~~~~~~~~~~~~ls~~l~~ 357 (679)
T PRK05580 294 NIPVVLGSATPSLESLANAQQGRY----------------RLLRLTKRAGGARLPEVEIIDMRELLRGENGSFLSPPLLE 357 (679)
T ss_pred CCCEEEEcCCCCHHHHHHHhccce----------------eEEEeccccccCCCCeEEEEechhhhhhcccCCCCHHHHH
Confidence 889999999998887765432211 0222222210 00111111000 001112222
Q ss_pred HHHHHHhcCCCCcEEEEcCCHH----------------------------------------------------------
Q 006122 266 TVLLIHDKEPPGDILVFLTGQD---------------------------------------------------------- 287 (660)
Q Consensus 266 ~~~~~~~~~~~~~iLVF~~~~~---------------------------------------------------------- 287 (660)
.+.+.. ..+.++|||+|.+.
T Consensus 358 ~i~~~l--~~g~qvll~~nrrGy~~~~~C~~Cg~~~~C~~C~~~l~~h~~~~~l~Ch~Cg~~~~~~~~Cp~Cg~~~l~~~ 435 (679)
T PRK05580 358 AIKQRL--ERGEQVLLFLNRRGYAPFLLCRDCGWVAECPHCDASLTLHRFQRRLRCHHCGYQEPIPKACPECGSTDLVPV 435 (679)
T ss_pred HHHHHH--HcCCeEEEEEcCCCCCCceEhhhCcCccCCCCCCCceeEECCCCeEECCCCcCCCCCCCCCCCCcCCeeEEe
Confidence 222222 24456888877532
Q ss_pred --HHHHHHHHHHHHhhhccCCCCCeEEEEccCCCC--HHHHhhhcCCCCCCCcEEEEeCCCcccccCCCCeEEEE--eCC
Q 006122 288 --DIDATIQLLTEEARTSKKNSSGLIILPLYSGLS--RAEQEQVFSPTPRGKRKVVISTNIAETSLTLEGIVYVV--DSG 361 (660)
Q Consensus 288 --~i~~l~~~L~~~~~~~~~~~~~~~v~~lh~~l~--~~~r~~v~~~f~~g~~~vlvaT~i~e~Gidip~v~~VI--d~g 361 (660)
.++++++.|.+.+ ++..+..+|+++. .++++++++.|++|+.+|||+|+++++|+|+|+|+.|+ |.+
T Consensus 436 g~G~e~~~e~l~~~f-------p~~~v~~~~~d~~~~~~~~~~~l~~f~~g~~~ILVgT~~iakG~d~p~v~lV~il~aD 508 (679)
T PRK05580 436 GPGTERLEEELAELF-------PEARILRIDRDTTRRKGALEQLLAQFARGEADILIGTQMLAKGHDFPNVTLVGVLDAD 508 (679)
T ss_pred eccHHHHHHHHHHhC-------CCCcEEEEeccccccchhHHHHHHHHhcCCCCEEEEChhhccCCCCCCcCEEEEEcCc
Confidence 4566666666653 4678999999986 46788999999999999999999999999999999884 433
Q ss_pred CccceeecCCCCcccceeeecCHHhHHHhhcccCCC-CCcEEEE
Q 006122 362 FSKQRFYNPISDIENLVVAPISKASARQRAGRAGRV-RPGKCYR 404 (660)
Q Consensus 362 ~~k~~~~~~~~~~~~l~~~~~s~~~~~QR~GRaGR~-~~G~~~~ 404 (660)
. ..+...+.........+.|++|||||. .+|.++.
T Consensus 509 ~--------~l~~pdfra~Er~~~~l~q~~GRagR~~~~g~vii 544 (679)
T PRK05580 509 L--------GLFSPDFRASERTFQLLTQVAGRAGRAEKPGEVLI 544 (679)
T ss_pred h--------hccCCccchHHHHHHHHHHHHhhccCCCCCCEEEE
Confidence 2 112111221223357788999999997 8898874
No 90
>TIGR00595 priA primosomal protein N'. All proteins in this family for which functions are known are components of the primosome which is involved in replication, repair, and recombination.This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=99.92 E-value=3.3e-24 Score=233.69 Aligned_cols=294 Identities=19% Similarity=0.178 Sum_probs=183.5
Q ss_pred EEEcCCCCcHHHHHHHHHHhccccCCCeEEEEeCchHHHHHHHHHHHHHHhCCeeeeEEeeeeeccc-----cCCCCCce
Q 006122 69 IIVGETGSGKTTQIPQYLKEAGWADGGRVIACTQPRRLAVQAVASRVAEEMGVKVGEEVGYTIRFED-----FTNKDLTA 143 (660)
Q Consensus 69 ii~apTGsGKT~~ip~~l~~~~~~~~~~~i~v~p~r~la~~~~~~~~~~~~~~~~~~~vg~~~~~~~-----~~~~~~~~ 143 (660)
++.||||||||...-.++... ...+.++++++|++.|+.|. ++++.+.++..+....|.....+. ....+..+
T Consensus 1 LL~g~TGsGKT~v~l~~i~~~-l~~g~~vLvlvP~i~L~~Q~-~~~l~~~f~~~v~vlhs~~~~~er~~~~~~~~~g~~~ 78 (505)
T TIGR00595 1 LLFGVTGSGKTEVYLQAIEKV-LALGKSVLVLVPEIALTPQM-IQRFKYRFGSQVAVLHSGLSDSEKLQAWRKVKNGEIL 78 (505)
T ss_pred CccCCCCCCHHHHHHHHHHHH-HHcCCeEEEEeCcHHHHHHH-HHHHHHHhCCcEEEEECCCCHHHHHHHHHHHHcCCCC
Confidence 478999999995543333332 33466789999999988764 566777777766655552211110 11122578
Q ss_pred EEEechHHHHHHHhcCCCCCCCcEEEEeCCCcCCcChhHHH----HHHHHHHHhcCCceEEEeecccchHHHHHHhhcCC
Q 006122 144 IKFLTDGVLLREMMDDPLLTKYSVIMVDEAHERSISTDILL----GLLKKIQRCRSDLRLIISSATIEAKSMSAFFHARK 219 (660)
Q Consensus 144 I~v~T~~~ll~~l~~~~~l~~~~~iIiDE~Her~~~~d~ll----~~l~~~~~~~~~~kii~~SAT~~~~~~~~~~~~~~ 219 (660)
|+|+|+..+.. -+.++++|||||+|+-+...+-.. .-+........+.++|++|||+..+.+.....+..
T Consensus 79 IVVGTrsalf~------p~~~l~lIIVDEeh~~sykq~~~p~y~ar~~a~~ra~~~~~~vil~SATPsles~~~~~~g~~ 152 (505)
T TIGR00595 79 VVIGTRSALFL------PFKNLGLIIVDEEHDSSYKQEEGPRYHARDVAVYRAKKFNCPVVLGSATPSLESYHNAKQKAY 152 (505)
T ss_pred EEECChHHHcC------cccCCCEEEEECCCccccccccCCCCcHHHHHHHHHHhcCCCEEEEeCCCCHHHHHHHhcCCe
Confidence 99999987642 267899999999996543332111 01122233446889999999998887766543321
Q ss_pred CCCCCcccccCCCCCCeEEEECC----cccc-ceEEecCCCc--hhHHHHHHHHHHHHHhcCCCCcEEEEcCCHHH----
Q 006122 220 GRRGLEGVELVPRLEPAILSVEG----RGFN-VQIHYVEEPV--SDYVQAAVSTVLLIHDKEPPGDILVFLTGQDD---- 288 (660)
Q Consensus 220 ~~~~~~~~~~~~~~~~~~~~~~~----~~~~-v~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~iLVF~~~~~~---- 288 (660)
. .+.+.. ...| +++....... ......+++.+.+.. ..++++|||+|++..
T Consensus 153 ~----------------~~~l~~r~~~~~~p~v~vid~~~~~~~~~ls~~l~~~i~~~l--~~g~qvLvflnrrGya~~~ 214 (505)
T TIGR00595 153 R----------------LLVLTRRVSGRKPPEVKLIDMRKEPRQSFLSPELITAIEQTL--AAGEQSILFLNRRGYSKNL 214 (505)
T ss_pred E----------------EeechhhhcCCCCCeEEEEecccccccCCccHHHHHHHHHHH--HcCCcEEEEEeCCcCCCee
Confidence 0 111111 1111 1111111100 011122333333322 345679999887653
Q ss_pred --------------------------------------------------------HHHHHHHHHHHhhhccCCCCCeEE
Q 006122 289 --------------------------------------------------------IDATIQLLTEEARTSKKNSSGLII 312 (660)
Q Consensus 289 --------------------------------------------------------i~~l~~~L~~~~~~~~~~~~~~~v 312 (660)
++++.+.|.+.+ ++..+
T Consensus 215 ~C~~Cg~~~~C~~C~~~l~~h~~~~~l~Ch~Cg~~~~~~~~Cp~C~s~~l~~~g~Gte~~~e~l~~~f-------p~~~v 287 (505)
T TIGR00595 215 LCRSCGYILCCPNCDVSLTYHKKEGKLRCHYCGYQEPIPKTCPQCGSEDLVYKGYGTEQVEEELAKLF-------PGARI 287 (505)
T ss_pred EhhhCcCccCCCCCCCceEEecCCCeEEcCCCcCcCCCCCCCCCCCCCeeEeecccHHHHHHHHHhhC-------CCCcE
Confidence 477777777654 47889
Q ss_pred EEccCCCCHHHH--hhhcCCCCCCCcEEEEeCCCcccccCCCCeEEEE--eCCCccceeecCCCCcccceeeecCHHhHH
Q 006122 313 LPLYSGLSRAEQ--EQVFSPTPRGKRKVVISTNIAETSLTLEGIVYVV--DSGFSKQRFYNPISDIENLVVAPISKASAR 388 (660)
Q Consensus 313 ~~lh~~l~~~~r--~~v~~~f~~g~~~vlvaT~i~e~Gidip~v~~VI--d~g~~k~~~~~~~~~~~~l~~~~~s~~~~~ 388 (660)
..+|++++..++ +++++.|++|+.+|||+|++++.|+|+|+|+.|+ |.+. ..+...+....-....+.
T Consensus 288 ~~~d~d~~~~~~~~~~~l~~f~~g~~~ILVgT~~i~kG~d~~~v~lV~vl~aD~--------~l~~pd~ra~E~~~~ll~ 359 (505)
T TIGR00595 288 ARIDSDTTSRKGAHEALLNQFANGKADILIGTQMIAKGHHFPNVTLVGVLDADS--------GLHSPDFRAAERGFQLLT 359 (505)
T ss_pred EEEecccccCccHHHHHHHHHhcCCCCEEEeCcccccCCCCCcccEEEEEcCcc--------cccCcccchHHHHHHHHH
Confidence 999999887665 7899999999999999999999999999999874 5332 111111211123456788
Q ss_pred HhhcccCCC-CCcEEE
Q 006122 389 QRAGRAGRV-RPGKCY 403 (660)
Q Consensus 389 QR~GRaGR~-~~G~~~ 403 (660)
|++|||||. .+|.++
T Consensus 360 q~~GRagR~~~~g~vi 375 (505)
T TIGR00595 360 QVAGRAGRAEDPGQVI 375 (505)
T ss_pred HHHhccCCCCCCCEEE
Confidence 999999997 789887
No 91
>TIGR00963 secA preprotein translocase, SecA subunit. The proteins SecA-F and SecY, not all of which are necessary, comprise the standard prokaryotic protein translocation apparatus. Other, specialized translocation systems also exist but are not as broadly distributed. This model describes SecA, an essential member of the apparatus.
Probab=99.92 E-value=1e-23 Score=231.51 Aligned_cols=119 Identities=25% Similarity=0.252 Sum_probs=101.5
Q ss_pred HHHHHHHHHHHhcCCCCcEEEEcCCHHHHHHHHHHHHHHhhhccCCCCCeEEEEccCCCCHHHHhhhcCCCCCCCcEEEE
Q 006122 261 QAAVSTVLLIHDKEPPGDILVFLTGQDDIDATIQLLTEEARTSKKNSSGLIILPLYSGLSRAEQEQVFSPTPRGKRKVVI 340 (660)
Q Consensus 261 ~~~~~~~~~~~~~~~~~~iLVF~~~~~~i~~l~~~L~~~~~~~~~~~~~~~v~~lh~~l~~~~r~~v~~~f~~g~~~vlv 340 (660)
...+..+...+. .+.++||||++.+.++.+++.|.+. ++....+||. +.+|...+..|..+...|+|
T Consensus 392 ~ai~~~i~~~~~--~grpvLV~t~si~~se~ls~~L~~~---------gi~~~~Lna~--q~~rEa~ii~~ag~~g~VtI 458 (745)
T TIGR00963 392 KAVVDEIKERHA--KGQPVLVGTTSVEKSELLSNLLKER---------GIPHNVLNAK--NHEREAEIIAQAGRKGAVTI 458 (745)
T ss_pred HHHHHHHHHHHh--cCCCEEEEeCcHHHHHHHHHHHHHc---------CCCeEEeeCC--hHHHHHHHHHhcCCCceEEE
Confidence 344455544543 4677999999999999999999886 7788899998 77888888889999999999
Q ss_pred eCCCcccccCCCC-------eEEEEeCCCccceeecCCCCcccceeeecCHHhHHHhhcccCCC-CCcEEEEccChHH
Q 006122 341 STNIAETSLTLEG-------IVYVVDSGFSKQRFYNPISDIENLVVAPISKASARQRAGRAGRV-RPGKCYRLYTEEY 410 (660)
Q Consensus 341 aT~i~e~Gidip~-------v~~VId~g~~k~~~~~~~~~~~~l~~~~~s~~~~~QR~GRaGR~-~~G~~~~l~~~~~ 410 (660)
|||+|++|+||+. ..+||.+.+ |.|...+.||+||+||. .||.+..+++.++
T Consensus 459 ATnmAgRGtDI~l~~V~~~GGl~VI~t~~------------------p~s~ri~~q~~GRtGRqG~~G~s~~~ls~eD 518 (745)
T TIGR00963 459 ATNMAGRGTDIKLEEVKELGGLYVIGTER------------------HESRRIDNQLRGRSGRQGDPGSSRFFLSLED 518 (745)
T ss_pred EeccccCCcCCCccchhhcCCcEEEecCC------------------CCcHHHHHHHhccccCCCCCcceEEEEeccH
Confidence 9999999999998 459999877 88999999999999999 8999888887543
No 92
>TIGR01054 rgy reverse gyrase. Generally, these gyrases are encoded as a single polypeptide. An exception was found in Methanopyrus kandleri, where enzyme is split within the topoisomerase domain, yielding a heterodimer of gene products designated RgyB and RgyA.
Probab=99.92 E-value=1.3e-23 Score=247.21 Aligned_cols=278 Identities=21% Similarity=0.201 Sum_probs=176.7
Q ss_pred cCCCcHHHHHHHHHHHhcCCEEEEEcCCCCcHHH-HHHHHHHhccccCCCeEEEEeCchHHHHHH--HHHHHHHHhCCee
Q 006122 47 QRLPVYKYRTAILYLVETHATTIIVGETGSGKTT-QIPQYLKEAGWADGGRVIACTQPRRLAVQA--VASRVAEEMGVKV 123 (660)
Q Consensus 47 ~~lPi~~~~~~i~~~l~~~~~vii~apTGsGKT~-~ip~~l~~~~~~~~~~~i~v~p~r~la~~~--~~~~~~~~~~~~~ 123 (660)
.....++.|...+..+..+++++++||||||||+ .+|...... ..+.++++++|+|+|+.|. ..+.+....+...
T Consensus 75 ~g~~p~~iQ~~~i~~il~G~d~vi~ApTGsGKT~f~l~~~~~l~--~~g~~vLIL~PTreLa~Qi~~~l~~l~~~~~i~~ 152 (1171)
T TIGR01054 75 VGSEPWSIQKMWAKRVLRGDSFAIIAPTGVGKTTFGLAMSLFLA--KKGKRCYIILPTTLLVIQVAEKISSLAEKAGVGT 152 (1171)
T ss_pred cCCCCcHHHHHHHHHHhCCCeEEEECCCCCCHHHHHHHHHHHHH--hcCCeEEEEeCHHHHHHHHHHHHHHHHHhcCCce
Confidence 3446677888888888899999999999999994 444333222 2456789999999999883 3344555555443
Q ss_pred e---eEEeeeeecc-----ccCCCCCceEEEechHHHHHHHhcCCCCCCCcEEEEeCCCcCCcC-----------hhHHH
Q 006122 124 G---EEVGYTIRFE-----DFTNKDLTAIKFLTDGVLLREMMDDPLLTKYSVIMVDEAHERSIS-----------TDILL 184 (660)
Q Consensus 124 ~---~~vg~~~~~~-----~~~~~~~~~I~v~T~~~ll~~l~~~~~l~~~~~iIiDE~Her~~~-----------~d~ll 184 (660)
. ...|.....+ .....+..+|+|+||+.|.+.+..-. .+++++|+||||. .++ .+|..
T Consensus 153 ~~i~~~~Gg~~~~e~~~~~~~l~~~~~dIlV~Tp~rL~~~~~~l~--~~~~~iVvDEaD~-~L~~~k~vd~il~llGF~~ 229 (1171)
T TIGR01054 153 VNIGAYHSRLPTKEKKEFMERIENGDFDILITTTMFLSKNYDELG--PKFDFIFVDDVDA-LLKASKNVDKLLKLLGFSE 229 (1171)
T ss_pred eeeeeecCCCCHHHHHHHHHHHhcCCCCEEEECHHHHHHHHHHhc--CCCCEEEEeChHh-hhhccccHHHHHHHcCCCH
Confidence 2 2233211111 01112258999999999988765421 2899999999993 332 11111
Q ss_pred HHHHH-----------------------HHHhcCCce--EEEeecccchHHHH-HHhhcCCCCCCCcccccCCCCCCeEE
Q 006122 185 GLLKK-----------------------IQRCRSDLR--LIISSATIEAKSMS-AFFHARKGRRGLEGVELVPRLEPAIL 238 (660)
Q Consensus 185 ~~l~~-----------------------~~~~~~~~k--ii~~SAT~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~ 238 (660)
..+.. +.....+.+ ++++|||..+.... .+|.... .+
T Consensus 230 e~i~~il~~~~~~~~~~~~~~~~~~~~~~~~~~~~~q~~li~~SAT~~p~~~~~~l~r~ll-----------------~~ 292 (1171)
T TIGR01054 230 ELIEKAWKLIRLRLKLYRALHAKKRLELLEAIPGKKRGCLIVSSATGRPRGKRAKLFRELL-----------------GF 292 (1171)
T ss_pred HHHHHHHHHhhhccccchHHHHHHHHHHHHhhhhccCcEEEEEeCCCCccccHHHHccccc-----------------ce
Confidence 11111 111122333 67789995332222 3333221 12
Q ss_pred EECCc---cccceEEecCCCchhHHHHHHHHHHHHHhcCCCCcEEEEcCCH---HHHHHHHHHHHHHhhhccCCCCCeEE
Q 006122 239 SVEGR---GFNVQIHYVEEPVSDYVQAAVSTVLLIHDKEPPGDILVFLTGQ---DDIDATIQLLTEEARTSKKNSSGLII 312 (660)
Q Consensus 239 ~~~~~---~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iLVF~~~~---~~i~~l~~~L~~~~~~~~~~~~~~~v 312 (660)
.+... ...+...|..... .... +..+.... ++++||||+++ +.++++++.|.+. ++.+
T Consensus 293 ~v~~~~~~~r~I~~~~~~~~~--~~~~----L~~ll~~l-~~~~IVFv~t~~~~~~a~~l~~~L~~~---------g~~a 356 (1171)
T TIGR01054 293 EVGGGSDTLRNVVDVYVEDED--LKET----LLEIVKKL-GTGGIVYVSIDYGKEKAEEIAEFLENH---------GVKA 356 (1171)
T ss_pred EecCccccccceEEEEEeccc--HHHH----HHHHHHHc-CCCEEEEEeccccHHHHHHHHHHHHhC---------CceE
Confidence 22211 1234445543222 1111 22222222 35699999999 9999999999775 7899
Q ss_pred EEccCCCCHHHHhhhcCCCCCCCcEEEEe----CCCcccccCCCC-eEEEEeCCCccce
Q 006122 313 LPLYSGLSRAEQEQVFSPTPRGKRKVVIS----TNIAETSLTLEG-IVYVVDSGFSKQR 366 (660)
Q Consensus 313 ~~lh~~l~~~~r~~v~~~f~~g~~~vlva----T~i~e~Gidip~-v~~VId~g~~k~~ 366 (660)
..+||+++. .+++.|++|+.+|||| |+++++|||+|+ |+|||++|..+-+
T Consensus 357 ~~lhg~~~~----~~l~~Fr~G~~~vLVata~~tdv~aRGIDip~~V~~vI~~~~P~~~ 411 (1171)
T TIGR01054 357 VAYHATKPK----EDYEKFAEGEIDVLIGVASYYGTLVRGLDLPERVRYAVFLGVPKFK 411 (1171)
T ss_pred EEEeCCCCH----HHHHHHHcCCCCEEEEeccccCcccccCCCCccccEEEEECCCCEE
Confidence 999999973 6789999999999999 599999999999 8999999998754
No 93
>PRK09694 helicase Cas3; Provisional
Probab=99.91 E-value=8.8e-23 Score=231.98 Aligned_cols=317 Identities=19% Similarity=0.186 Sum_probs=180.2
Q ss_pred CCcHHHHHHHHHHHhcCCEEEEEcCCCCcHHHHHHHHHHhc-cccCCCeEEEEeCchHHHHHHHHHHHHH----Hh-CCe
Q 006122 49 LPVYKYRTAILYLVETHATTIIVGETGSGKTTQIPQYLKEA-GWADGGRVIACTQPRRLAVQAVASRVAE----EM-GVK 122 (660)
Q Consensus 49 lPi~~~~~~i~~~l~~~~~vii~apTGsGKT~~ip~~l~~~-~~~~~~~~i~v~p~r~la~~~~~~~~~~----~~-~~~ 122 (660)
...++.|..+.+...+...+||.||||+|||...-.++... ......++++..|++..+. ++.+|+.+ .+ ...
T Consensus 285 ~~p~p~Q~~~~~~~~~pgl~ileApTGsGKTEAAL~~A~~l~~~~~~~gi~~aLPT~Atan-~m~~Rl~~~~~~~f~~~~ 363 (878)
T PRK09694 285 YQPRQLQTLVDALPLQPGLTIIEAPTGSGKTEAALAYAWRLIDQGLADSIIFALPTQATAN-AMLSRLEALASKLFPSPN 363 (878)
T ss_pred CCChHHHHHHHhhccCCCeEEEEeCCCCCHHHHHHHHHHHHHHhCCCCeEEEECcHHHHHH-HHHHHHHHHHHHhcCCCc
Confidence 34577787776554567889999999999994433222221 1112345666777665554 45555443 22 233
Q ss_pred eeeEEeeee---eccc---------------------cC-CC---CCceEEEechHHHHHHHhcCC--CCCCC----cEE
Q 006122 123 VGEEVGYTI---RFED---------------------FT-NK---DLTAIKFLTDGVLLREMMDDP--LLTKY----SVI 168 (660)
Q Consensus 123 ~~~~vg~~~---~~~~---------------------~~-~~---~~~~I~v~T~~~ll~~l~~~~--~l~~~----~~i 168 (660)
++...|... .+.. .. .. --..|+|+|...++......+ .++.+ ++|
T Consensus 364 v~L~Hg~a~l~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~kr~llapi~V~TiDQlL~a~l~~kh~~lR~~~La~svv 443 (878)
T PRK09694 364 LILAHGNSRFNHLFQSLKSRAATEQGQEEAWVQCCEWLSQSNKRVFLGQIGVCTIDQVLISVLPVKHRFIRGFGLGRSVL 443 (878)
T ss_pred eEeecCcchhhhhhhhhhcccccccccchhhhHHHHHHhhhhhhhhcCCEEEcCHHHHHHHHHccchHHHHHHhhccCeE
Confidence 444444221 0000 00 00 026899999988875554332 13333 589
Q ss_pred EEeCCCcCCcChh-HHHHHHHHHHHhcCCceEEEeecccchHHHHHHhhcCCCCCC---CcccccCC---CCCCeEEEEC
Q 006122 169 MVDEAHERSISTD-ILLGLLKKIQRCRSDLRLIISSATIEAKSMSAFFHARKGRRG---LEGVELVP---RLEPAILSVE 241 (660)
Q Consensus 169 IiDE~Her~~~~d-~ll~~l~~~~~~~~~~kii~~SAT~~~~~~~~~~~~~~~~~~---~~~~~~~~---~~~~~~~~~~ 241 (660)
||||+|.....+. ++..+++.+.. ...++|+||||++.....+++........ ...-+... ......+.+.
T Consensus 444 IiDEVHAyD~ym~~lL~~~L~~l~~--~g~~vIllSATLP~~~r~~L~~a~~~~~~~~~~~~YPlvt~~~~~~~~~~~~~ 521 (878)
T PRK09694 444 IVDEVHAYDAYMYGLLEAVLKAQAQ--AGGSVILLSATLPATLKQKLLDTYGGHDPVELSSAYPLITWRGVNGAQRFDLS 521 (878)
T ss_pred EEechhhCCHHHHHHHHHHHHHHHh--cCCcEEEEeCCCCHHHHHHHHHHhccccccccccccccccccccccceeeecc
Confidence 9999996544333 33444444433 35679999999976554444432110000 00000000 0000011111
Q ss_pred C------ccccceEEecCCCchhHHHHHHHHHHHHHhcCCCCcEEEEcCCHHHHHHHHHHHHHHhhhccCCCCCeEEEEc
Q 006122 242 G------RGFNVQIHYVEEPVSDYVQAAVSTVLLIHDKEPPGDILVFLTGQDDIDATIQLLTEEARTSKKNSSGLIILPL 315 (660)
Q Consensus 242 ~------~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iLVF~~~~~~i~~l~~~L~~~~~~~~~~~~~~~v~~l 315 (660)
. ....+.+..............+..+.... ..++++||||||++.++++++.|++.. .....+..+
T Consensus 522 ~~~~~~~~~~~v~v~~~~~~~~~~~~~~l~~i~~~~--~~g~~vLVf~NTV~~Aq~ly~~L~~~~------~~~~~v~ll 593 (878)
T PRK09694 522 AHPEQLPARFTIQLEPICLADMLPDLTLLQRMIAAA--NAGAQVCLICNLVDDAQKLYQRLKELN------NTQVDIDLF 593 (878)
T ss_pred ccccccCcceEEEEEeeccccccCHHHHHHHHHHHH--hcCCEEEEEECCHHHHHHHHHHHHhhC------CCCceEEEE
Confidence 0 11112221111110011122233333222 356789999999999999999998652 124679999
Q ss_pred cCCCCHHHHh----hhcCCC-CCCC---cEEEEeCCCcccccCCCCeEEEEeCCCccceeecCCCCcccceeeecCHHhH
Q 006122 316 YSGLSRAEQE----QVFSPT-PRGK---RKVVISTNIAETSLTLEGIVYVVDSGFSKQRFYNPISDIENLVVAPISKASA 387 (660)
Q Consensus 316 h~~l~~~~r~----~v~~~f-~~g~---~~vlvaT~i~e~Gidip~v~~VId~g~~k~~~~~~~~~~~~l~~~~~s~~~~ 387 (660)
||.++..+|. ++++.| ++|+ .+|||||+++|+||||+ ++++|.. ..+..++
T Consensus 594 Hsrf~~~dR~~~E~~vl~~fgk~g~r~~~~ILVaTQViE~GLDId-~DvlItd--------------------laPidsL 652 (878)
T PRK09694 594 HARFTLNDRREKEQRVIENFGKNGKRNQGRILVATQVVEQSLDLD-FDWLITQ--------------------LCPVDLL 652 (878)
T ss_pred eCCCCHHHHHHHHHHHHHHHHhcCCcCCCeEEEECcchhheeecC-CCeEEEC--------------------CCCHHHH
Confidence 9999999994 566677 6666 47999999999999995 7877742 2335789
Q ss_pred HHhhcccCCC
Q 006122 388 RQRAGRAGRV 397 (660)
Q Consensus 388 ~QR~GRaGR~ 397 (660)
+||+||+||.
T Consensus 653 iQRaGR~~R~ 662 (878)
T PRK09694 653 FQRLGRLHRH 662 (878)
T ss_pred HHHHhccCCC
Confidence 9999999997
No 94
>COG1200 RecG RecG-like helicase [DNA replication, recombination, and repair / Transcription]
Probab=99.91 E-value=2.3e-23 Score=222.32 Aligned_cols=310 Identities=15% Similarity=0.161 Sum_probs=215.7
Q ss_pred hcCCC--cHHHHHHHHHHHhcC------CEEEEEcCCCCcHHHHHHHHHHhccccCCCeEEEEeCchHHHHHHHH--HHH
Q 006122 46 RQRLP--VYKYRTAILYLVETH------ATTIIVGETGSGKTTQIPQYLKEAGWADGGRVIACTQPRRLAVQAVA--SRV 115 (660)
Q Consensus 46 ~~~lP--i~~~~~~i~~~l~~~------~~vii~apTGsGKT~~ip~~l~~~~~~~~~~~i~v~p~r~la~~~~~--~~~ 115 (660)
...|| +...|+.+++-|... =+=+++|.-|||||.++...++.. ...+.++.+.+||--||.|.+. ..+
T Consensus 256 ~~~LPF~LT~aQ~~vi~EI~~Dl~~~~~M~RLlQGDVGSGKTvVA~laml~a-i~~G~Q~ALMAPTEILA~QH~~~~~~~ 334 (677)
T COG1200 256 LAALPFKLTNAQKRVIKEILADLASPVPMNRLLQGDVGSGKTVVALLAMLAA-IEAGYQAALMAPTEILAEQHYESLRKW 334 (677)
T ss_pred HHhCCCCccHHHHHHHHHHHhhhcCchhhHHHhccCcCCCHHHHHHHHHHHH-HHcCCeeEEeccHHHHHHHHHHHHHHH
Confidence 34455 666676666666432 145999999999995554444433 4456778888888777777433 334
Q ss_pred HHHhCCeeeeEEeeeeec------cccCCCCCceEEEechHHHHHHHhcCCCCCCCcEEEEeCCCcCCcChhHHHHHHHH
Q 006122 116 AEEMGVKVGEEVGYTIRF------EDFTNKDLTAIKFLTDGVLLREMMDDPLLTKYSVIMVDEAHERSISTDILLGLLKK 189 (660)
Q Consensus 116 ~~~~~~~~~~~vg~~~~~------~~~~~~~~~~I~v~T~~~ll~~l~~~~~l~~~~~iIiDE~Her~~~~d~ll~~l~~ 189 (660)
....|+.++..+|....- +...+. ..+|+|+|...+. .+..+.++.++||||=|..++.. -..
T Consensus 335 l~~~~i~V~lLtG~~kgk~r~~~l~~l~~G-~~~ivVGTHALiQ----d~V~F~~LgLVIiDEQHRFGV~Q------R~~ 403 (677)
T COG1200 335 LEPLGIRVALLTGSLKGKARKEILEQLASG-EIDIVVGTHALIQ----DKVEFHNLGLVIIDEQHRFGVHQ------RLA 403 (677)
T ss_pred hhhcCCeEEEeecccchhHHHHHHHHHhCC-CCCEEEEcchhhh----cceeecceeEEEEeccccccHHH------HHH
Confidence 556788888888843221 122233 7999999986543 34458999999999999544432 223
Q ss_pred HHHhcC-CceEEEeecccchHHHH-HHhhcCCCCCCCcccccCCCCCCeEEEECCccccceEEecCCCchhHHHHHHHHH
Q 006122 190 IQRCRS-DLRLIISSATIEAKSMS-AFFHARKGRRGLEGVELVPRLEPAILSVEGRGFNVQIHYVEEPVSDYVQAAVSTV 267 (660)
Q Consensus 190 ~~~~~~-~~kii~~SAT~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~ 267 (660)
+..... .+.+++||||+=+..++ ..|++..+.. +-+.|....|+..........+. .++.+
T Consensus 404 L~~KG~~~Ph~LvMTATPIPRTLAlt~fgDldvS~--------------IdElP~GRkpI~T~~i~~~~~~~---v~e~i 466 (677)
T COG1200 404 LREKGEQNPHVLVMTATPIPRTLALTAFGDLDVSI--------------IDELPPGRKPITTVVIPHERRPE---VYERI 466 (677)
T ss_pred HHHhCCCCCcEEEEeCCCchHHHHHHHhccccchh--------------hccCCCCCCceEEEEeccccHHH---HHHHH
Confidence 334445 57899999999666665 4555543210 33445555788887777643332 23333
Q ss_pred HHHHhcCCCCcEEEEcCCHHHHH--------HHHHHHHHHhhhccCCCCCeEEEEccCCCCHHHHhhhcCCCCCCCcEEE
Q 006122 268 LLIHDKEPPGDILVFLTGQDDID--------ATIQLLTEEARTSKKNSSGLIILPLYSGLSRAEQEQVFSPTPRGKRKVV 339 (660)
Q Consensus 268 ~~~~~~~~~~~iLVF~~~~~~i~--------~l~~~L~~~~~~~~~~~~~~~v~~lh~~l~~~~r~~v~~~f~~g~~~vl 339 (660)
..-+ ..+.++.|.||-.++.+ .+++.|+.. .+++.+..+||.|++++++++++.|++|+.+||
T Consensus 467 ~~ei--~~GrQaY~VcPLIeESE~l~l~~a~~~~~~L~~~-------~~~~~vgL~HGrm~~~eKd~vM~~Fk~~e~~IL 537 (677)
T COG1200 467 REEI--AKGRQAYVVCPLIEESEKLELQAAEELYEELKSF-------LPELKVGLVHGRMKPAEKDAVMEAFKEGEIDIL 537 (677)
T ss_pred HHHH--HcCCEEEEEeccccccccchhhhHHHHHHHHHHH-------cccceeEEEecCCChHHHHHHHHHHHcCCCcEE
Confidence 3322 35778999999776554 444555433 358889999999999999999999999999999
Q ss_pred EeCCCcccccCCCCeEEEEeCCCccceeecCCCCcccceeeecCHHhHHHhhcccCCC-CCcEEEEccChHH
Q 006122 340 ISTNIAETSLTLEGIVYVVDSGFSKQRFYNPISDIENLVVAPISKASARQRAGRAGRV-RPGKCYRLYTEEY 410 (660)
Q Consensus 340 vaT~i~e~Gidip~v~~VId~g~~k~~~~~~~~~~~~l~~~~~s~~~~~QR~GRaGR~-~~G~~~~l~~~~~ 410 (660)
|||.+.|.|||+|+.++.|- +|+. ...-++..|-.||+||. .++.|+.+|.+..
T Consensus 538 VaTTVIEVGVdVPnATvMVI--------e~AE---------RFGLaQLHQLRGRVGRG~~qSyC~Ll~~~~~ 592 (677)
T COG1200 538 VATTVIEVGVDVPNATVMVI--------ENAE---------RFGLAQLHQLRGRVGRGDLQSYCVLLYKPPL 592 (677)
T ss_pred EEeeEEEecccCCCCeEEEE--------echh---------hhhHHHHHHhccccCCCCcceEEEEEeCCCC
Confidence 99999999999999998764 4443 33456777999999998 8899999997543
No 95
>KOG0950 consensus DNA polymerase theta/eta, DEAD-box superfamily [General function prediction only]
Probab=99.91 E-value=1.1e-23 Score=229.39 Aligned_cols=335 Identities=18% Similarity=0.217 Sum_probs=212.9
Q ss_pred CCcHHHHHHHH--HHHhcCCEEEEEcCCCCcHHHHHHHHHHhccccCCCeEEEEeCchHHHHHHHHH--HHHHHhCCeee
Q 006122 49 LPVYKYRTAIL--YLVETHATTIIVGETGSGKTTQIPQYLKEAGWADGGRVIACTQPRRLAVQAVAS--RVAEEMGVKVG 124 (660)
Q Consensus 49 lPi~~~~~~i~--~~l~~~~~vii~apTGsGKT~~ip~~l~~~~~~~~~~~i~v~p~r~la~~~~~~--~~~~~~~~~~~ 124 (660)
+-.|.+|.+-+ ..+.++++.|..+||+.|||.....+++.........++.+.|--.+..+.... -+....|..+.
T Consensus 222 ~~~fewq~ecls~~~~~e~~nliys~Pts~gktlvaeilml~~~l~~rr~~llilp~vsiv~Ek~~~l~~~~~~~G~~ve 301 (1008)
T KOG0950|consen 222 LKLFEWQAECLSLPRLLERKNLIYSLPTSAGKTLVAEILMLREVLCRRRNVLLILPYVSIVQEKISALSPFSIDLGFPVE 301 (1008)
T ss_pred HHHHHHHHHHhcchhhhcccceEEeCCCccchHHHHHHHHHHHHHHHhhceeEecceeehhHHHHhhhhhhccccCCcch
Confidence 34666676655 346688999999999999997766666555444445556666554444332221 22333444443
Q ss_pred eEEeeeeeccccCCCCCceEEEechHHH---HHHHhcCCCCCCCcEEEEeCCC-----cCCcChhHHHHHHHHHHH--hc
Q 006122 125 EEVGYTIRFEDFTNKDLTAIKFLTDGVL---LREMMDDPLLTKYSVIMVDEAH-----ERSISTDILLGLLKKIQR--CR 194 (660)
Q Consensus 125 ~~vg~~~~~~~~~~~~~~~I~v~T~~~l---l~~l~~~~~l~~~~~iIiDE~H-----er~~~~d~ll~~l~~~~~--~~ 194 (660)
. |.-++..........+.++|.++- .+.+.....+..++.||+||.| +|+. .+..++.++.- ..
T Consensus 302 ~---y~g~~~p~~~~k~~sv~i~tiEkanslin~lie~g~~~~~g~vvVdElhmi~d~~rg~---~lE~~l~k~~y~~~~ 375 (1008)
T KOG0950|consen 302 E---YAGRFPPEKRRKRESVAIATIEKANSLINSLIEQGRLDFLGMVVVDELHMIGDKGRGA---ILELLLAKILYENLE 375 (1008)
T ss_pred h---hcccCCCCCcccceeeeeeehHhhHhHHHHHHhcCCccccCcEEEeeeeeeeccccch---HHHHHHHHHHHhccc
Confidence 3 332333333333688999999874 4455555668889999999999 4444 33444444433 22
Q ss_pred CCceEEEeeccc-chHHHHHHhhcCCCCCCCcccccCCCCC--CeEEEECCccccceEE---ecCC---CchhH-HHHHH
Q 006122 195 SDLRLIISSATI-EAKSMSAFFHARKGRRGLEGVELVPRLE--PAILSVEGRGFNVQIH---YVEE---PVSDY-VQAAV 264 (660)
Q Consensus 195 ~~~kii~~SAT~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~v~~~---~~~~---~~~~~-~~~~~ 264 (660)
..+++|+||||+ |.+.+++|+++.......+++++...+. ..+.... +...+... +... ...|. +....
T Consensus 376 ~~~~iIGMSATi~N~~lL~~~L~A~~y~t~fRPv~L~E~ik~G~~i~~~~-r~~~lr~ia~l~~~~~g~~dpD~~v~L~t 454 (1008)
T KOG0950|consen 376 TSVQIIGMSATIPNNSLLQDWLDAFVYTTRFRPVPLKEYIKPGSLIYESS-RNKVLREIANLYSSNLGDEDPDHLVGLCT 454 (1008)
T ss_pred cceeEeeeecccCChHHHHHHhhhhheecccCcccchhccCCCcccccch-hhHHHHHhhhhhhhhcccCCCcceeeehh
Confidence 347899999999 9999999999765333344433322211 1111110 10000000 0000 00000 00000
Q ss_pred HHHHHHHhcCCCCcEEEEcCCHHHHHHHHHHHHHHhhhc-----------------------------cCCCCCeEEEEc
Q 006122 265 STVLLIHDKEPPGDILVFLTGQDDIDATIQLLTEEARTS-----------------------------KKNSSGLIILPL 315 (660)
Q Consensus 265 ~~~~~~~~~~~~~~iLVF~~~~~~i~~l~~~L~~~~~~~-----------------------------~~~~~~~~v~~l 315 (660)
+. ...+.++|||||++..++.++..+....+.. ....-...+.+|
T Consensus 455 et------~~e~~~~lvfc~sk~~ce~~a~~~~~~vpk~~~~e~~~~~~~~~s~s~~lr~~~~~ld~Vl~~ti~~GvAyH 528 (1008)
T KOG0950|consen 455 ET------APEGSSVLVFCPSKKNCENVASLIAKKVPKHIKSEKRLGLWELLSISNLLRRIPGILDPVLAKTIPYGVAYH 528 (1008)
T ss_pred hh------hhcCCeEEEEcCcccchHHHHHHHHHHhhHhhhhhhhhhHHHHHHHHhHhhcCCcccchHHheeccccceec
Confidence 00 0233459999999999999987776544320 011224569999
Q ss_pred cCCCCHHHHhhhcCCCCCCCcEEEEeCCCcccccCCCCeEEEEeCCCccceeecCCCCcccceeeecCHHhHHHhhcccC
Q 006122 316 YSGLSRAEQEQVFSPTPRGKRKVVISTNIAETSLTLEGIVYVVDSGFSKQRFYNPISDIENLVVAPISKASARQRAGRAG 395 (660)
Q Consensus 316 h~~l~~~~r~~v~~~f~~g~~~vlvaT~i~e~Gidip~v~~VId~g~~k~~~~~~~~~~~~l~~~~~s~~~~~QR~GRaG 395 (660)
|+|++.++|+.+...|++|...|++||++++.|+|.|..+++|..-+ ......+..+|.||+||||
T Consensus 529 haGLT~eER~~iE~afr~g~i~vl~aTSTlaaGVNLPArRVIiraP~--------------~g~~~l~~~~YkQM~GRAG 594 (1008)
T KOG0950|consen 529 HAGLTSEEREIIEAAFREGNIFVLVATSTLAAGVNLPARRVIIRAPY--------------VGREFLTRLEYKQMVGRAG 594 (1008)
T ss_pred ccccccchHHHHHHHHHhcCeEEEEecchhhccCcCCcceeEEeCCc--------------cccchhhhhhHHhhhhhhh
Confidence 99999999999999999999999999999999999999999996544 2233778899999999999
Q ss_pred CC---CCcEEEEccChHH
Q 006122 396 RV---RPGKCYRLYTEEY 410 (660)
Q Consensus 396 R~---~~G~~~~l~~~~~ 410 (660)
|+ .-|.++..+.+.+
T Consensus 595 R~gidT~GdsiLI~k~~e 612 (1008)
T KOG0950|consen 595 RTGIDTLGDSILIIKSSE 612 (1008)
T ss_pred hcccccCcceEEEeeccc
Confidence 98 6789999888655
No 96
>COG1061 SSL2 DNA or RNA helicases of superfamily II [Transcription / DNA replication, recombination, and repair]
Probab=99.90 E-value=1.4e-22 Score=218.43 Aligned_cols=308 Identities=16% Similarity=0.164 Sum_probs=193.4
Q ss_pred HhcCCCcHHHHHHHHHHHhc----CCEEEEEcCCCCcHHHHHHHHHHhccccCCCeEEEEeCchHHHHHHHHHHHHHHhC
Q 006122 45 QRQRLPVYKYRTAILYLVET----HATTIIVGETGSGKTTQIPQYLKEAGWADGGRVIACTQPRRLAVQAVASRVAEEMG 120 (660)
Q Consensus 45 ~~~~lPi~~~~~~i~~~l~~----~~~vii~apTGsGKT~~ip~~l~~~~~~~~~~~i~v~p~r~la~~~~~~~~~~~~~ 120 (660)
......+..+|++.++++.+ ++..+++.|||+|||.+....+.... ..+++++|++.|..|.. +++.+..+
T Consensus 31 ~~~~~~lr~yQ~~al~a~~~~~~~~~~gvivlpTGaGKT~va~~~~~~~~----~~~Lvlv~~~~L~~Qw~-~~~~~~~~ 105 (442)
T COG1061 31 VAFEFELRPYQEEALDALVKNRRTERRGVIVLPTGAGKTVVAAEAIAELK----RSTLVLVPTKELLDQWA-EALKKFLL 105 (442)
T ss_pred cccCCCCcHHHHHHHHHHHhhcccCCceEEEeCCCCCHHHHHHHHHHHhc----CCEEEEECcHHHHHHHH-HHHHHhcC
Confidence 33456689999999999988 88899999999999987777766653 23888998888877654 66666665
Q ss_pred Ce--eeeEEeeeeeccccCCCCCceEEEechHHHHHHH-hcCCCCCCCcEEEEeCCCcCCcChhHHHHHHHHHHHhcCCc
Q 006122 121 VK--VGEEVGYTIRFEDFTNKDLTAIKFLTDGVLLREM-MDDPLLTKYSVIMVDEAHERSISTDILLGLLKKIQRCRSDL 197 (660)
Q Consensus 121 ~~--~~~~vg~~~~~~~~~~~~~~~I~v~T~~~ll~~l-~~~~~l~~~~~iIiDE~Her~~~~d~ll~~l~~~~~~~~~~ 197 (660)
.. +|...|.... .. ...|+|+|.+.+.+.- ......+.+++||+||||+...+ . .+.+.......
T Consensus 106 ~~~~~g~~~~~~~~-----~~-~~~i~vat~qtl~~~~~l~~~~~~~~~liI~DE~Hh~~a~--~----~~~~~~~~~~~ 173 (442)
T COG1061 106 LNDEIGIYGGGEKE-----LE-PAKVTVATVQTLARRQLLDEFLGNEFGLIIFDEVHHLPAP--S----YRRILELLSAA 173 (442)
T ss_pred CccccceecCceec-----cC-CCcEEEEEhHHHhhhhhhhhhcccccCEEEEEccccCCcH--H----HHHHHHhhhcc
Confidence 53 4443332221 11 1479999999998862 33333457999999999953322 2 22222323344
Q ss_pred e-EEEeeccc---chHHHHHHhhcCC---CCCCCcccccCCCCCC-eEEEECCc-cccceEEecCCCchh----------
Q 006122 198 R-LIISSATI---EAKSMSAFFHARK---GRRGLEGVELVPRLEP-AILSVEGR-GFNVQIHYVEEPVSD---------- 258 (660)
Q Consensus 198 k-ii~~SAT~---~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~-~~~~~~~~-~~~v~~~~~~~~~~~---------- 258 (660)
. ++++|||+ |......++.... ....+..........+ ....+... .......|.......
T Consensus 174 ~~~LGLTATp~R~D~~~~~~l~~~~g~~vy~~~~~~li~~g~Lap~~~~~i~~~~t~~~~~~~~~~~~~~~~~~~~~~~~ 253 (442)
T COG1061 174 YPRLGLTATPEREDGGRIGDLFDLIGPIVYEVSLKELIDEGYLAPYKYVEIKVTLTEDEEREYAKESARFRELLRARGTL 253 (442)
T ss_pred cceeeeccCceeecCCchhHHHHhcCCeEeecCHHHHHhCCCccceEEEEEEeccchHHHHHhhhhhhhhhhhhhhhhhh
Confidence 4 99999997 3222333332221 0000000000000000 11111110 000000000000000
Q ss_pred -----------HHHHHHHHHHHHHhcC-CCCcEEEEcCCHHHHHHHHHHHHHHhhhccCCCCCeEEEEccCCCCHHHHhh
Q 006122 259 -----------YVQAAVSTVLLIHDKE-PPGDILVFLTGQDDIDATIQLLTEEARTSKKNSSGLIILPLYSGLSRAEQEQ 326 (660)
Q Consensus 259 -----------~~~~~~~~~~~~~~~~-~~~~iLVF~~~~~~i~~l~~~L~~~~~~~~~~~~~~~v~~lh~~l~~~~r~~ 326 (660)
..+.....+..+.... .+.+++||+....+++.++..+... +. +..+.+..+..+|..
T Consensus 254 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lif~~~~~~a~~i~~~~~~~---------~~-~~~it~~t~~~eR~~ 323 (442)
T COG1061 254 RAENEARRIAIASERKIAAVRGLLLKHARGDKTLIFASDVEHAYEIAKLFLAP---------GI-VEAITGETPKEEREA 323 (442)
T ss_pred hHHHHHHHHhhccHHHHHHHHHHHHHhcCCCcEEEEeccHHHHHHHHHHhcCC---------Cc-eEEEECCCCHHHHHH
Confidence 0001111122222212 4568999999999999999888543 44 888999999999999
Q ss_pred hcCCCCCCCcEEEEeCCCcccccCCCCeEEEEeCCCccceeecCCCCcccceeeecCHHhHHHhhcccCCC
Q 006122 327 VFSPTPRGKRKVVISTNIAETSLTLEGIVYVVDSGFSKQRFYNPISDIENLVVAPISKASARQRAGRAGRV 397 (660)
Q Consensus 327 v~~~f~~g~~~vlvaT~i~e~Gidip~v~~VId~g~~k~~~~~~~~~~~~l~~~~~s~~~~~QR~GRaGR~ 397 (660)
+++.|+.|.+++|+++.++.+|+|+|+++++|-..- .-|...|.||+||.-|.
T Consensus 324 il~~fr~g~~~~lv~~~vl~EGvDiP~~~~~i~~~~------------------t~S~~~~~Q~lGR~LR~ 376 (442)
T COG1061 324 ILERFRTGGIKVLVTVKVLDEGVDIPDADVLIILRP------------------TGSRRLFIQRLGRGLRP 376 (442)
T ss_pred HHHHHHcCCCCEEEEeeeccceecCCCCcEEEEeCC------------------CCcHHHHHHHhhhhccC
Confidence 999999999999999999999999999999995221 55789999999999996
No 97
>KOG0329 consensus ATP-dependent RNA helicase [RNA processing and modification]
Probab=99.90 E-value=2.6e-23 Score=193.78 Aligned_cols=315 Identities=18% Similarity=0.181 Sum_probs=213.5
Q ss_pred cccCCCCC-cccccccCCCCCCCccchHhHHHHhcCCCcHHHHHHHHHHHhcCCEEEEEcCCCCcHH--HHHHHHHHhcc
Q 006122 14 LLDDEEGG-VVFLSSSLSSASSIGYGYASIEKQRQRLPVYKYRTAILYLVETHATTIIVGETGSGKT--TQIPQYLKEAG 90 (660)
Q Consensus 14 ~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~lPi~~~~~~i~~~l~~~~~vii~apTGsGKT--~~ip~~l~~~~ 90 (660)
-+.+.+++ ..-.++.|.++-+.+...+.+.......|..-+++.|.+++.+-+ ++.+|..|-||| +.+..+-....
T Consensus 28 ~~~d~kgsyv~ihssgfrdfllkpellraivdcgfehpsevqhecipqailgmd-vlcqaksgmgktavfvl~tlqqiep 106 (387)
T KOG0329|consen 28 PKKDKKGSYVSIHSSGFRDFLLKPELLRAIVDCGFEHPSEVQHECIPQAILGMD-VLCQAKSGMGKTAVFVLATLQQIEP 106 (387)
T ss_pred ccccccCcEEEEeccchhhhhcCHHHHHHHHhccCCCchHhhhhhhhHHhhcch-hheecccCCCceeeeehhhhhhcCC
Confidence 44455554 344677899999999999999999999999999999999998766 899999999999 33332222222
Q ss_pred ccCCCeEEEEeCchHHHHH--HHHHHHHHHh-CCeeeeEEee-eeeccccCCCCCceEEEechHHHHHHHhcCCC-CCCC
Q 006122 91 WADGGRVIACTQPRRLAVQ--AVASRVAEEM-GVKVGEEVGY-TIRFEDFTNKDLTAIKFLTDGVLLREMMDDPL-LTKY 165 (660)
Q Consensus 91 ~~~~~~~i~v~p~r~la~~--~~~~~~~~~~-~~~~~~~vg~-~~~~~~~~~~~~~~I~v~T~~~ll~~l~~~~~-l~~~ 165 (660)
....-.++++..+|+||-| .-..|+++.+ +.++....|. .+..+.......++|+++|||+++....+..+ +.++
T Consensus 107 v~g~vsvlvmchtrelafqi~~ey~rfskymP~vkvaVFfGG~~Ikkdee~lk~~PhivVgTPGrilALvr~k~l~lk~v 186 (387)
T KOG0329|consen 107 VDGQVSVLVMCHTRELAFQISKEYERFSKYMPSVKVSVFFGGLFIKKDEELLKNCPHIVVGTPGRILALVRNRSLNLKNV 186 (387)
T ss_pred CCCeEEEEEEeccHHHHHHHHHHHHHHHhhCCCceEEEEEcceeccccHHHHhCCCeEEEcCcHHHHHHHHhccCchhhc
Confidence 2222346888999999988 4455677776 4566666663 33333222222689999999999999988776 9999
Q ss_pred cEEEEeCCCcCCcChhHHHHHHHHHHHhcCCceEEEeeccc--chHHHHHHhhcCCCCCCCcccccCCCCCCeEEEECC-
Q 006122 166 SVIMVDEAHERSISTDILLGLLKKIQRCRSDLRLIISSATI--EAKSMSAFFHARKGRRGLEGVELVPRLEPAILSVEG- 242 (660)
Q Consensus 166 ~~iIiDE~Her~~~~d~ll~~l~~~~~~~~~~kii~~SAT~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~- 242 (660)
.++|+|||+...-..|....+-........+.|++.+|||+ +......-|...|.. +.+..
T Consensus 187 khFvlDEcdkmle~lDMrRDvQEifr~tp~~KQvmmfsatlskeiRpvC~kFmQdPmE----------------i~vDdE 250 (387)
T KOG0329|consen 187 KHFVLDECDKMLEQLDMRRDVQEIFRMTPHEKQVMMFSATLSKEIRPVCHKFMQDPME----------------IFVDDE 250 (387)
T ss_pred ceeehhhHHHHHHHHHHHHHHHHHhhcCcccceeeeeeeecchhhHHHHHhhhcCchh----------------hhccch
Confidence 99999999943323333333333333345678899999999 444455444444311 11111
Q ss_pred ---ccccceEEecCCCchhHHHHHHHHHHHHHhcCCCCcEEEEcCCHHHHHHHHHHHHHHhhhccCCCCCeEEEEccCCC
Q 006122 243 ---RGFNVQIHYVEEPVSDYVQAAVSTVLLIHDKEPPGDILVFLTGQDDIDATIQLLTEEARTSKKNSSGLIILPLYSGL 319 (660)
Q Consensus 243 ---~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iLVF~~~~~~i~~l~~~L~~~~~~~~~~~~~~~v~~lh~~l 319 (660)
..+....+|......+.. ..+.++...-.-.+++||+.+...+
T Consensus 251 ~KLtLHGLqQ~YvkLke~eKN----rkl~dLLd~LeFNQVvIFvKsv~Rl------------------------------ 296 (387)
T KOG0329|consen 251 AKLTLHGLQQYYVKLKENEKN----RKLNDLLDVLEFNQVVIFVKSVQRL------------------------------ 296 (387)
T ss_pred hhhhhhhHHHHHHhhhhhhhh----hhhhhhhhhhhhcceeEeeehhhhh------------------------------
Confidence 123344444433222211 1222222333456688898775431
Q ss_pred CHHHHhhhcCCCCCCCcEEEEeCCCcccccCCCCeEEEEeCCCccceeecCCCCcccceeeecCHHhHHHhhcccCCC-C
Q 006122 320 SRAEQEQVFSPTPRGKRKVVISTNIAETSLTLEGIVYVVDSGFSKQRFYNPISDIENLVVAPISKASARQRAGRAGRV-R 398 (660)
Q Consensus 320 ~~~~r~~v~~~f~~g~~~vlvaT~i~e~Gidip~v~~VId~g~~k~~~~~~~~~~~~l~~~~~s~~~~~QR~GRaGR~-~ 398 (660)
+ | ..+ +|||++..+|+||..+++|+++++ |-+..+|.||.|||||. .
T Consensus 297 ~----------f---~kr-~vat~lfgrgmdiervNi~~NYdm------------------p~~~DtYlHrv~rAgrfGt 344 (387)
T KOG0329|consen 297 S----------F---QKR-LVATDLFGRGMDIERVNIVFNYDM------------------PEDSDTYLHRVARAGRFGT 344 (387)
T ss_pred h----------h---hhh-hHHhhhhccccCcccceeeeccCC------------------CCCchHHHHHhhhhhcccc
Confidence 0 1 123 899999999999999999999888 78888999999999999 8
Q ss_pred CcEEEEccChHHh
Q 006122 399 PGKCYRLYTEEYF 411 (660)
Q Consensus 399 ~G~~~~l~~~~~~ 411 (660)
.|..+.+++.+.-
T Consensus 345 kglaitfvs~e~d 357 (387)
T KOG0329|consen 345 KGLAITFVSDEND 357 (387)
T ss_pred ccceeehhcchhh
Confidence 8999998876543
No 98
>KOG0353 consensus ATP-dependent DNA helicase [General function prediction only]
Probab=99.89 E-value=4.1e-22 Score=195.32 Aligned_cols=326 Identities=15% Similarity=0.173 Sum_probs=216.0
Q ss_pred CCCCCCCccchHhHHHHhcCC-CcHHHHHHHHHHHhcCCEEEEEcCCCCcHH--HHHHHHHHhccccCCCeEEEEeCchH
Q 006122 29 LSSASSIGYGYASIEKQRQRL-PVYKYRTAILYLVETHATTIIVGETGSGKT--TQIPQYLKEAGWADGGRVIACTQPRR 105 (660)
Q Consensus 29 ~~~~~~~~~~~~~~~~~~~~l-Pi~~~~~~i~~~l~~~~~vii~apTGsGKT--~~ip~~l~~~~~~~~~~~i~v~p~r~ 105 (660)
..++|.+...- .+++....| -..+.|.+.+++...+..+++..|||.||| +++|.++.+ +-.+++.|...
T Consensus 73 kd~fpws~e~~-~ilk~~f~lekfrplq~~ain~~ma~ed~~lil~tgggkslcyqlpal~ad------g~alvi~plis 145 (695)
T KOG0353|consen 73 KDDFPWSDEAK-DILKEQFHLEKFRPLQLAAINATMAGEDAFLILPTGGGKSLCYQLPALCAD------GFALVICPLIS 145 (695)
T ss_pred cCCCCCchHHH-HHHHHHhhHHhcChhHHHHhhhhhccCceEEEEeCCCccchhhhhhHHhcC------CceEeechhHH
Confidence 45677777543 333332222 244557788888888888999999999999 889976643 34688889888
Q ss_pred HHHHHHHHHHHHHhCCeeeeEEeee-----eecccc-C-CCCCceEEEechHHHHHH------HhcCCCCCCCcEEEEeC
Q 006122 106 LAVQAVASRVAEEMGVKVGEEVGYT-----IRFEDF-T-NKDLTAIKFLTDGVLLRE------MMDDPLLTKYSVIMVDE 172 (660)
Q Consensus 106 la~~~~~~~~~~~~~~~~~~~vg~~-----~~~~~~-~-~~~~~~I~v~T~~~ll~~------l~~~~~l~~~~~iIiDE 172 (660)
|...++.+ .+.+|+....+-... .+.+.. . ....-+++|+||+.+... +........+..|-|||
T Consensus 146 lmedqil~--lkqlgi~as~lnansske~~k~v~~~i~nkdse~kliyvtpekiaksk~~mnkleka~~~~~~~~iaide 223 (695)
T KOG0353|consen 146 LMEDQILQ--LKQLGIDASMLNANSSKEEAKRVEAAITNKDSEFKLIYVTPEKIAKSKKFMNKLEKALEAGFFKLIAIDE 223 (695)
T ss_pred HHHHHHHH--HHHhCcchhhccCcccHHHHHHHHHHHcCCCceeEEEEecHHHHHHHHHHHHHHHHHhhcceeEEEeecc
Confidence 87776554 344444322211111 111111 1 112578999999987542 22222366789999999
Q ss_pred CCcCCcC-hhHH--HHHHHHHHHhcCCceEEEeecccchH---HHHHHhhcCCCCCCCcccccCCCCCCeEEEEC-Cccc
Q 006122 173 AHERSIS-TDIL--LGLLKKIQRCRSDLRLIISSATIEAK---SMSAFFHARKGRRGLEGVELVPRLEPAILSVE-GRGF 245 (660)
Q Consensus 173 ~Her~~~-~d~l--l~~l~~~~~~~~~~kii~~SAT~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~ 245 (660)
+|.-+.+ .||. ...+..+.+..++..+|+++||.... +..+.+.-.. .+... |-..
T Consensus 224 vhccsqwghdfr~dy~~l~ilkrqf~~~~iigltatatn~vl~d~k~il~ie~-----------------~~tf~a~fnr 286 (695)
T KOG0353|consen 224 VHCCSQWGHDFRPDYKALGILKRQFKGAPIIGLTATATNHVLDDAKDILCIEA-----------------AFTFRAGFNR 286 (695)
T ss_pred eeehhhhCcccCcchHHHHHHHHhCCCCceeeeehhhhcchhhHHHHHHhHHh-----------------hheeecccCC
Confidence 9954422 1221 12334445577899999999997332 2333332211 11111 1111
Q ss_pred c-c--eEEecCCCchhHHHHHHHHHHHHHhcCCCCcEEEEcCCHHHHHHHHHHHHHHhhhccCCCCCeEEEEccCCCCHH
Q 006122 246 N-V--QIHYVEEPVSDYVQAAVSTVLLIHDKEPPGDILVFLTGQDDIDATIQLLTEEARTSKKNSSGLIILPLYSGLSRA 322 (660)
Q Consensus 246 ~-v--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iLVF~~~~~~i~~l~~~L~~~~~~~~~~~~~~~v~~lh~~l~~~ 322 (660)
| . ++.-.+....+..+.....+ .....+..-+|||-++++++.++..|+.. ++....+|+.|.++
T Consensus 287 ~nl~yev~qkp~n~dd~~edi~k~i---~~~f~gqsgiiyc~sq~d~ekva~alkn~---------gi~a~~yha~lep~ 354 (695)
T KOG0353|consen 287 PNLKYEVRQKPGNEDDCIEDIAKLI---KGDFAGQSGIIYCFSQKDCEKVAKALKNH---------GIHAGAYHANLEPE 354 (695)
T ss_pred CCceeEeeeCCCChHHHHHHHHHHh---ccccCCCcceEEEeccccHHHHHHHHHhc---------CccccccccccCcc
Confidence 1 1 11112223344444444333 22234556799999999999999999887 88999999999999
Q ss_pred HHhhhcCCCCCCCcEEEEeCCCcccccCCCCeEEEEeCCCccceeecCCCCcccceeeecCHHhHHH-------------
Q 006122 323 EQEQVFSPTPRGKRKVVISTNIAETSLTLEGIVYVVDSGFSKQRFYNPISDIENLVVAPISKASARQ------------- 389 (660)
Q Consensus 323 ~r~~v~~~f~~g~~~vlvaT~i~e~Gidip~v~~VId~g~~k~~~~~~~~~~~~l~~~~~s~~~~~Q------------- 389 (660)
++.-+-+.+..|++.|||||-..++|||-|+|++||+--+ |-|..+|.|
T Consensus 355 dks~~hq~w~a~eiqvivatvafgmgidkpdvrfvihhsl------------------~ksienyyqasarillrmtkqk 416 (695)
T KOG0353|consen 355 DKSGAHQGWIAGEIQVIVATVAFGMGIDKPDVRFVIHHSL------------------PKSIENYYQASARILLRMTKQK 416 (695)
T ss_pred ccccccccccccceEEEEEEeeecccCCCCCeeEEEeccc------------------chhHHHHHHHHHHHHHHHhhhc
Confidence 9999999999999999999999999999999999998766 777888888
Q ss_pred ------------------------------hhcccCCC-CCcEEEEccChHH
Q 006122 390 ------------------------------RAGRAGRV-RPGKCYRLYTEEY 410 (660)
Q Consensus 390 ------------------------------R~GRaGR~-~~G~~~~l~~~~~ 410 (660)
..|||||. .+..|+..|.-.+
T Consensus 417 nksdtggstqinilevctnfkiffavfsekesgragrd~~~a~cilyy~~~d 468 (695)
T KOG0353|consen 417 NKSDTGGSTQINILEVCTNFKIFFAVFSEKESGRAGRDDMKADCILYYGFAD 468 (695)
T ss_pred ccccCCCcceeehhhhhccceeeeeeecchhccccccCCCcccEEEEechHH
Confidence 78999999 8888988887443
No 99
>PRK11448 hsdR type I restriction enzyme EcoKI subunit R; Provisional
Probab=99.89 E-value=8.1e-22 Score=230.49 Aligned_cols=333 Identities=20% Similarity=0.284 Sum_probs=192.1
Q ss_pred CcHHHHHHHHHHHh-----cCCEEEEEcCCCCcHHHHHHHHHHhcc-ccCCCeEEEEeCchHHHHHHHHHHHHHHhCCee
Q 006122 50 PVYKYRTAILYLVE-----THATTIIVGETGSGKTTQIPQYLKEAG-WADGGRVIACTQPRRLAVQAVASRVAEEMGVKV 123 (660)
Q Consensus 50 Pi~~~~~~i~~~l~-----~~~~vii~apTGsGKT~~ip~~l~~~~-~~~~~~~i~v~p~r~la~~~~~~~~~~~~~~~~ 123 (660)
.+..+|.++++++. +++..+|+++||||||..+..++.... .....+++++++.+.|..|.... +.. .+...
T Consensus 413 ~lR~YQ~~AI~ai~~a~~~g~r~~Ll~maTGSGKT~tai~li~~L~~~~~~~rVLfLvDR~~L~~Qa~~~-F~~-~~~~~ 490 (1123)
T PRK11448 413 GLRYYQEDAIQAVEKAIVEGQREILLAMATGTGKTRTAIALMYRLLKAKRFRRILFLVDRSALGEQAEDA-FKD-TKIEG 490 (1123)
T ss_pred CCCHHHHHHHHHHHHHHHhccCCeEEEeCCCCCHHHHHHHHHHHHHhcCccCeEEEEecHHHHHHHHHHH-HHh-ccccc
Confidence 45678877776653 245689999999999944433333221 11235788888888888875443 222 11111
Q ss_pred eeEE-e-eeee-ccccCCCCCceEEEechHHHHHHHhcC------CCCCCCcEEEEeCCCcCCcChh-------H-----
Q 006122 124 GEEV-G-YTIR-FEDFTNKDLTAIKFLTDGVLLREMMDD------PLLTKYSVIMVDEAHERSISTD-------I----- 182 (660)
Q Consensus 124 ~~~v-g-~~~~-~~~~~~~~~~~I~v~T~~~ll~~l~~~------~~l~~~~~iIiDE~Her~~~~d-------~----- 182 (660)
+... + +.+. ..........+|+|+|.+.+.+.+... +.+..+++||||||| |+...| .
T Consensus 491 ~~~~~~i~~i~~L~~~~~~~~~~I~iaTiQtl~~~~~~~~~~~~~~~~~~fdlIIiDEaH-Rs~~~d~~~~~~~~~~~~~ 569 (1123)
T PRK11448 491 DQTFASIYDIKGLEDKFPEDETKVHVATVQGMVKRILYSDDPMDKPPVDQYDCIIVDEAH-RGYTLDKEMSEGELQFRDQ 569 (1123)
T ss_pred ccchhhhhchhhhhhhcccCCCCEEEEEHHHHHHhhhccccccccCCCCcccEEEEECCC-CCCccccccccchhccchh
Confidence 1000 0 1111 111111226899999999998765321 247889999999999 764211 0
Q ss_pred --HHHHHHHHHHhcCCceEEEeecccchHHHHHHhhcCCCCCCCccc---c-cCCCCCCeEEEE----CCcccc----ce
Q 006122 183 --LLGLLKKIQRCRSDLRLIISSATIEAKSMSAFFHARKGRRGLEGV---E-LVPRLEPAILSV----EGRGFN----VQ 248 (660)
Q Consensus 183 --ll~~l~~~~~~~~~~kii~~SAT~~~~~~~~~~~~~~~~~~~~~~---~-~~~~~~~~~~~~----~~~~~~----v~ 248 (660)
.....+.+.... +..+|++|||+... ..++|+......+.... . +.+..+|..+.. .|-.+. ++
T Consensus 570 ~~~~~~yr~iL~yF-dA~~IGLTATP~r~-t~~~FG~pv~~Ysl~eAI~DG~Lv~~~~p~~i~t~~~~~gi~~~~~e~~~ 647 (1123)
T PRK11448 570 LDYVSKYRRVLDYF-DAVKIGLTATPALH-TTEIFGEPVYTYSYREAVIDGYLIDHEPPIRIETRLSQEGIHFEKGEEVE 647 (1123)
T ss_pred hhHHHHHHHHHhhc-CccEEEEecCCccc-hhHHhCCeeEEeeHHHHHhcCCcccCcCCEEEEEEeccccccccccchhh
Confidence 022334444433 56789999999533 34666642211111110 0 110001111111 000000 00
Q ss_pred --------E--EecCCC----ch---------hHHHHHHHHHHHHHhcCCCCcEEEEcCCHHHHHHHHHHHHHHhhhccC
Q 006122 249 --------I--HYVEEP----VS---------DYVQAAVSTVLLIHDKEPPGDILVFLTGQDDIDATIQLLTEEARTSKK 305 (660)
Q Consensus 249 --------~--~~~~~~----~~---------~~~~~~~~~~~~~~~~~~~~~iLVF~~~~~~i~~l~~~L~~~~~~~~~ 305 (660)
+ ...++. .. +....++..+........++++||||.++++++.+++.|.+.+.....
T Consensus 648 ~~~~~~~~i~~~~l~d~~~~~~~~~~~~vi~~~~~~~i~~~l~~~l~~~~~~KtiIF~~s~~HA~~i~~~L~~~f~~~~~ 727 (1123)
T PRK11448 648 VINTQTGEIDLATLEDEVDFEVEDFNRRVITESFNRVVCEELAKYLDPTGEGKTLIFAATDAHADMVVRLLKEAFKKKYG 727 (1123)
T ss_pred hcchhhhhhhhccCcHHHhhhHHHHHHHHhhHHHHHHHHHHHHHHHhccCCCcEEEEEcCHHHHHHHHHHHHHHHHhhcC
Confidence 0 000000 00 011112222333333334589999999999999999999876533211
Q ss_pred CCCCeEEEEccCCCCHHHHhhhcCCCCCCCc-EEEEeCCCcccccCCCCeEEEEeCCCccceeecCCCCcccceeeecCH
Q 006122 306 NSSGLIILPLYSGLSRAEQEQVFSPTPRGKR-KVVISTNIAETSLTLEGIVYVVDSGFSKQRFYNPISDIENLVVAPISK 384 (660)
Q Consensus 306 ~~~~~~v~~lh~~l~~~~r~~v~~~f~~g~~-~vlvaT~i~e~Gidip~v~~VId~g~~k~~~~~~~~~~~~l~~~~~s~ 384 (660)
+.....+..++|+.+ ++..+++.|+++.. +|+|+++++.+|+|+|.|.+||.... +.|.
T Consensus 728 ~~~~~~v~~itg~~~--~~~~li~~Fk~~~~p~IlVsvdmL~TG~DvP~v~~vVf~rp------------------vkS~ 787 (1123)
T PRK11448 728 QVEDDAVIKITGSID--KPDQLIRRFKNERLPNIVVTVDLLTTGIDVPSICNLVFLRR------------------VRSR 787 (1123)
T ss_pred CcCccceEEEeCCcc--chHHHHHHHhCCCCCeEEEEecccccCCCcccccEEEEecC------------------CCCH
Confidence 222345667888875 45678999998876 79999999999999999999997433 5688
Q ss_pred HhHHHhhcccCCCCC--cE-EEEccC
Q 006122 385 ASARQRAGRAGRVRP--GK-CYRLYT 407 (660)
Q Consensus 385 ~~~~QR~GRaGR~~~--G~-~~~l~~ 407 (660)
..|+||+||+.|..+ |+ .+.+++
T Consensus 788 ~lf~QmIGRgtR~~~~~~K~~f~I~D 813 (1123)
T PRK11448 788 ILYEQMLGRATRLCPEIGKTHFRIFD 813 (1123)
T ss_pred HHHHHHHhhhccCCccCCCceEEEEe
Confidence 999999999999966 44 455555
No 100
>COG1197 Mfd Transcription-repair coupling factor (superfamily II helicase) [DNA replication, recombination, and repair / Transcription]
Probab=99.89 E-value=1.6e-21 Score=219.46 Aligned_cols=289 Identities=18% Similarity=0.198 Sum_probs=206.7
Q ss_pred EEEEEcCCCCcHHHHHHHHHHhccccCCCeEEEEeCchHHHHHHHHHHHHHHhC--CeeeeEEeeeeeccc-----cCCC
Q 006122 67 TTIIVGETGSGKTTQIPQYLKEAGWADGGRVIACTQPRRLAVQAVASRVAEEMG--VKVGEEVGYTIRFED-----FTNK 139 (660)
Q Consensus 67 ~vii~apTGsGKT~~ip~~l~~~~~~~~~~~i~v~p~r~la~~~~~~~~~~~~~--~~~~~~vg~~~~~~~-----~~~~ 139 (660)
+=+|||.-|-|||-++-..+..+ ...++++.+++||.-||.|.+.....+.-+ ++++...-+...-+. ....
T Consensus 617 DRLiCGDVGFGKTEVAmRAAFkA-V~~GKQVAvLVPTTlLA~QHy~tFkeRF~~fPV~I~~LSRF~s~kE~~~il~~la~ 695 (1139)
T COG1197 617 DRLICGDVGFGKTEVAMRAAFKA-VMDGKQVAVLVPTTLLAQQHYETFKERFAGFPVRIEVLSRFRSAKEQKEILKGLAE 695 (1139)
T ss_pred hheeecCcCCcHHHHHHHHHHHH-hcCCCeEEEEcccHHhHHHHHHHHHHHhcCCCeeEEEecccCCHHHHHHHHHHHhc
Confidence 35999999999997666555554 346677888999988877755443333333 333333222221111 1112
Q ss_pred CCceEEEechHHHHHHHhcCCCCCCCcEEEEeCCCcCCcChhHHHHHHHHHHHhcCCceEEEeecccchHHHHHHhhcCC
Q 006122 140 DLTAIKFLTDGVLLREMMDDPLLTKYSVIMVDEAHERSISTDILLGLLKKIQRCRSDLRLIISSATIEAKSMSAFFHARK 219 (660)
Q Consensus 140 ~~~~I~v~T~~~ll~~l~~~~~l~~~~~iIiDE~Her~~~~d~ll~~l~~~~~~~~~~kii~~SAT~~~~~~~~~~~~~~ 219 (660)
+..+|+|+|+..| ..+-.+.+++++||||-|..++.. -.++...+.+..++-||||+=+..+.--+.+..
T Consensus 696 G~vDIvIGTHrLL----~kdv~FkdLGLlIIDEEqRFGVk~------KEkLK~Lr~~VDvLTLSATPIPRTL~Msm~GiR 765 (1139)
T COG1197 696 GKVDIVIGTHRLL----SKDVKFKDLGLLIIDEEQRFGVKH------KEKLKELRANVDVLTLSATPIPRTLNMSLSGIR 765 (1139)
T ss_pred CCccEEEechHhh----CCCcEEecCCeEEEechhhcCccH------HHHHHHHhccCcEEEeeCCCCcchHHHHHhcch
Confidence 3789999998644 345559999999999999756533 334455668899999999996655554333221
Q ss_pred CCCCCcccccCCCCCCeEEE-ECCccccceEEecCCCchhHHHHHHHHHHHHHhcCCCCcEEEEcCCHHHHHHHHHHHHH
Q 006122 220 GRRGLEGVELVPRLEPAILS-VEGRGFNVQIHYVEEPVSDYVQAAVSTVLLIHDKEPPGDILVFLTGQDDIDATIQLLTE 298 (660)
Q Consensus 220 ~~~~~~~~~~~~~~~~~~~~-~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iLVF~~~~~~i~~l~~~L~~ 298 (660)
...++. .|...+||..+..+....-..+.....+ ..+|++-...|..++++.+++.|++
T Consensus 766 --------------dlSvI~TPP~~R~pV~T~V~~~d~~~ireAI~REl------~RgGQvfYv~NrV~~Ie~~~~~L~~ 825 (1139)
T COG1197 766 --------------DLSVIATPPEDRLPVKTFVSEYDDLLIREAILREL------LRGGQVFYVHNRVESIEKKAERLRE 825 (1139)
T ss_pred --------------hhhhccCCCCCCcceEEEEecCChHHHHHHHHHHH------hcCCEEEEEecchhhHHHHHHHHHH
Confidence 111333 2455688887776654333323333322 4688999999999999999999998
Q ss_pred HhhhccCCCCCeEEEEccCCCCHHHHhhhcCCCCCCCcEEEEeCCCcccccCCCCeEEEEeCCCccceeecCCCCcccce
Q 006122 299 EARTSKKNSSGLIILPLYSGLSRAEQEQVFSPTPRGKRKVVISTNIAETSLTLEGIVYVVDSGFSKQRFYNPISDIENLV 378 (660)
Q Consensus 299 ~~~~~~~~~~~~~v~~lh~~l~~~~r~~v~~~f~~g~~~vlvaT~i~e~Gidip~v~~VId~g~~k~~~~~~~~~~~~l~ 378 (660)
.. |...|...||.|+..+-++++..|-+|+.+|||||.|.|+|||||+.+.+|- .+..
T Consensus 826 LV-------PEarI~vaHGQM~e~eLE~vM~~F~~g~~dVLv~TTIIEtGIDIPnANTiII--------e~AD------- 883 (1139)
T COG1197 826 LV-------PEARIAVAHGQMRERELEEVMLDFYNGEYDVLVCTTIIETGIDIPNANTIII--------ERAD------- 883 (1139)
T ss_pred hC-------CceEEEEeecCCCHHHHHHHHHHHHcCCCCEEEEeeeeecCcCCCCCceEEE--------eccc-------
Confidence 75 5889999999999999999999999999999999999999999999998873 1111
Q ss_pred eeecCHHhHHHhhcccCCC-CCcEEEEccChHH
Q 006122 379 VAPISKASARQRAGRAGRV-RPGKCYRLYTEEY 410 (660)
Q Consensus 379 ~~~~s~~~~~QR~GRaGR~-~~G~~~~l~~~~~ 410 (660)
-..-++..|..||+||. ..+.||.+|++..
T Consensus 884 --~fGLsQLyQLRGRVGRS~~~AYAYfl~p~~k 914 (1139)
T COG1197 884 --KFGLAQLYQLRGRVGRSNKQAYAYFLYPPQK 914 (1139)
T ss_pred --cccHHHHHHhccccCCccceEEEEEeecCcc
Confidence 33457788999999999 8899999998643
No 101
>PRK04914 ATP-dependent helicase HepA; Validated
Probab=99.83 E-value=2.8e-19 Score=204.83 Aligned_cols=117 Identities=17% Similarity=0.189 Sum_probs=99.7
Q ss_pred HHHHHhcCCCCcEEEEcCCHHHHHHHHHHHHHHhhhccCCCCCeEEEEccCCCCHHHHhhhcCCCCC--CCcEEEEeCCC
Q 006122 267 VLLIHDKEPPGDILVFLTGQDDIDATIQLLTEEARTSKKNSSGLIILPLYSGLSRAEQEQVFSPTPR--GKRKVVISTNI 344 (660)
Q Consensus 267 ~~~~~~~~~~~~iLVF~~~~~~i~~l~~~L~~~~~~~~~~~~~~~v~~lh~~l~~~~r~~v~~~f~~--g~~~vlvaT~i 344 (660)
+..+.......++||||+++..+..+++.|.+. .++.+..+||+|+..+|.++++.|++ |..+|+|||++
T Consensus 484 L~~~L~~~~~~KvLVF~~~~~t~~~L~~~L~~~--------~Gi~~~~ihG~~s~~eR~~~~~~F~~~~~~~~VLIsTdv 555 (956)
T PRK04914 484 LIDFLKSHRSEKVLVICAKAATALQLEQALRER--------EGIRAAVFHEGMSIIERDRAAAYFADEEDGAQVLLCSEI 555 (956)
T ss_pred HHHHHHhcCCCeEEEEeCcHHHHHHHHHHHhhc--------cCeeEEEEECCCCHHHHHHHHHHHhcCCCCccEEEechh
Confidence 444445555778999999999999999999643 27889999999999999999999987 46999999999
Q ss_pred cccccCCCCeEEEEeCCCccceeecCCCCcccceeeecCHHhHHHhhcccCCC-CCc--EEEEccChH
Q 006122 345 AETSLTLEGIVYVVDSGFSKQRFYNPISDIENLVVAPISKASARQRAGRAGRV-RPG--KCYRLYTEE 409 (660)
Q Consensus 345 ~e~Gidip~v~~VId~g~~k~~~~~~~~~~~~l~~~~~s~~~~~QR~GRaGR~-~~G--~~~~l~~~~ 409 (660)
+++|+|++.+++||++++ |.+...|.||+||+||. +.| .+|.++.++
T Consensus 556 gseGlNlq~a~~VInfDl------------------P~nP~~~eQRIGR~~RiGQ~~~V~i~~~~~~~ 605 (956)
T PRK04914 556 GSEGRNFQFASHLVLFDL------------------PFNPDLLEQRIGRLDRIGQKHDIQIHVPYLEG 605 (956)
T ss_pred hccCCCcccccEEEEecC------------------CCCHHHHHHHhcccccCCCCceEEEEEccCCC
Confidence 999999999999999888 88999999999999998 333 456666654
No 102
>KOG0949 consensus Predicted helicase, DEAD-box superfamily [General function prediction only]
Probab=99.82 E-value=2.5e-19 Score=194.43 Aligned_cols=164 Identities=18% Similarity=0.129 Sum_probs=110.4
Q ss_pred CCcHHHHHHHHHHHhcCCEEEEEcCCCCcHHHHHHHHHHhc-cccCCCeEEEEeCchHHHHHHHHHHHHHHhCCe--ee-
Q 006122 49 LPVYKYRTAILYLVETHATTIIVGETGSGKTTQIPQYLKEA-GWADGGRVIACTQPRRLAVQAVASRVAEEMGVK--VG- 124 (660)
Q Consensus 49 lPi~~~~~~i~~~l~~~~~vii~apTGsGKT~~ip~~l~~~-~~~~~~~~i~v~p~r~la~~~~~~~~~~~~~~~--~~- 124 (660)
+--..+|.+.+..+..+...+|+|||.+|||+.-+..+-.- ...+.+.+|+|+|++++.+|--+.-.+.+..-. -|
T Consensus 510 F~Pd~WQ~elLDsvDr~eSavIVAPTSaGKTfisfY~iEKVLResD~~VVIyvaPtKaLVnQvsa~VyaRF~~~t~~rg~ 589 (1330)
T KOG0949|consen 510 FCPDEWQRELLDSVDRNESAVIVAPTSAGKTFISFYAIEKVLRESDSDVVIYVAPTKALVNQVSANVYARFDTKTFLRGV 589 (1330)
T ss_pred cCCcHHHHHHhhhhhcccceEEEeeccCCceeccHHHHHHHHhhcCCCEEEEecchHHHhhhhhHHHHHhhccCccccch
Confidence 45678999999999999999999999999995544332211 112456789999999999985555444442211 11
Q ss_pred eEEeeeeeccccCCCCCceEEEechHHHHHHHhcC----CCCCCCcEEEEeCCCcCCcChhHHHHHHHHHHHhcCCceEE
Q 006122 125 EEVGYTIRFEDFTNKDLTAIKFLTDGVLLREMMDD----PLLTKYSVIMVDEAHERSISTDILLGLLKKIQRCRSDLRLI 200 (660)
Q Consensus 125 ~~vg~~~~~~~~~~~~~~~I~v~T~~~ll~~l~~~----~~l~~~~~iIiDE~Her~~~~d~ll~~l~~~~~~~~~~kii 200 (660)
...|.-.+.-+ ..+-+++|+|+-|+.+-..+... .+..++++||+||+|..+-.-|-+. ....-.-..+.++
T Consensus 590 sl~g~ltqEYs-inp~nCQVLITvPecleslLlspp~~q~~cerIRyiIfDEVH~iG~~ed~l~---~Eqll~li~CP~L 665 (1330)
T KOG0949|consen 590 SLLGDLTQEYS-INPWNCQVLITVPECLESLLLSPPHHQKFCERIRYIIFDEVHLIGNEEDGLL---WEQLLLLIPCPFL 665 (1330)
T ss_pred hhHhhhhHHhc-CCchhceEEEEchHHHHHHhcCchhhhhhhhcceEEEechhhhccccccchH---HHHHHHhcCCCee
Confidence 12221111111 12227999999999998888764 3588999999999996553322211 1111112357799
Q ss_pred Eeeccc-chHHHHHHhh
Q 006122 201 ISSATI-EAKSMSAFFH 216 (660)
Q Consensus 201 ~~SAT~-~~~~~~~~~~ 216 (660)
++|||+ |+..+..|++
T Consensus 666 ~LSATigN~~l~qkWln 682 (1330)
T KOG0949|consen 666 VLSATIGNPNLFQKWLN 682 (1330)
T ss_pred EEecccCCHHHHHHHHH
Confidence 999999 9999999998
No 103
>PRK12906 secA preprotein translocase subunit SecA; Reviewed
Probab=99.82 E-value=5.3e-19 Score=196.25 Aligned_cols=117 Identities=26% Similarity=0.293 Sum_probs=99.9
Q ss_pred HHHHHHHHHHhcCCCCcEEEEcCCHHHHHHHHHHHHHHhhhccCCCCCeEEEEccCCCCHHHHhhhcCCCCCCCcEEEEe
Q 006122 262 AAVSTVLLIHDKEPPGDILVFLTGQDDIDATIQLLTEEARTSKKNSSGLIILPLYSGLSRAEQEQVFSPTPRGKRKVVIS 341 (660)
Q Consensus 262 ~~~~~~~~~~~~~~~~~iLVF~~~~~~i~~l~~~L~~~~~~~~~~~~~~~v~~lh~~l~~~~r~~v~~~f~~g~~~vlva 341 (660)
..+..+...+ ..+.++||||++++.++.++..|.+. ++....+|+.+...++..+.++++.|. |+||
T Consensus 428 al~~~i~~~~--~~g~pvLI~t~si~~se~ls~~L~~~---------gi~~~~Lna~~~~~Ea~ii~~ag~~g~--VtIA 494 (796)
T PRK12906 428 AVVKEIKERH--AKGQPVLVGTVAIESSERLSHLLDEA---------GIPHAVLNAKNHAKEAEIIMNAGQRGA--VTIA 494 (796)
T ss_pred HHHHHHHHHH--hCCCCEEEEeCcHHHHHHHHHHHHHC---------CCCeeEecCCcHHHHHHHHHhcCCCce--EEEE
Confidence 3344443333 35778999999999999999999886 788899999999888888888888776 9999
Q ss_pred CCCcccccCC---CCeE-----EEEeCCCccceeecCCCCcccceeeecCHHhHHHhhcccCCC-CCcEEEEccChH
Q 006122 342 TNIAETSLTL---EGIV-----YVVDSGFSKQRFYNPISDIENLVVAPISKASARQRAGRAGRV-RPGKCYRLYTEE 409 (660)
Q Consensus 342 T~i~e~Gidi---p~v~-----~VId~g~~k~~~~~~~~~~~~l~~~~~s~~~~~QR~GRaGR~-~~G~~~~l~~~~ 409 (660)
||+|++|.|| ++|. +||.+.+ |-|...+.||.||+||. .||.+..+++.+
T Consensus 495 TnmAGRGtDI~l~~~V~~~GGLhVI~te~------------------pes~ri~~Ql~GRtGRqG~~G~s~~~~sle 553 (796)
T PRK12906 495 TNMAGRGTDIKLGPGVKELGGLAVIGTER------------------HESRRIDNQLRGRSGRQGDPGSSRFYLSLE 553 (796)
T ss_pred eccccCCCCCCCCcchhhhCCcEEEeeec------------------CCcHHHHHHHhhhhccCCCCcceEEEEecc
Confidence 9999999999 4899 9999777 88999999999999999 899988877754
No 104
>PRK12904 preprotein translocase subunit SecA; Reviewed
Probab=99.82 E-value=9.6e-19 Score=195.02 Aligned_cols=134 Identities=18% Similarity=0.152 Sum_probs=90.4
Q ss_pred HHHHHHHHHHHhcCCCCcEEEEcCCHHHHHHHHHHHHHHhhhccCCCCCeEEEEccCCCCHHHHhhhcCCCCCCCcEEEE
Q 006122 261 QAAVSTVLLIHDKEPPGDILVFLTGQDDIDATIQLLTEEARTSKKNSSGLIILPLYSGLSRAEQEQVFSPTPRGKRKVVI 340 (660)
Q Consensus 261 ~~~~~~~~~~~~~~~~~~iLVF~~~~~~i~~l~~~L~~~~~~~~~~~~~~~v~~lh~~l~~~~r~~v~~~f~~g~~~vlv 340 (660)
...+..+...+ ..+.++||||+|++.++.+++.|.+. ++....+||. +.+|...+..|+.+...|+|
T Consensus 417 ~aI~~~I~~~~--~~grpVLIft~Si~~se~Ls~~L~~~---------gi~~~vLnak--q~eREa~Iia~Ag~~g~VtI 483 (830)
T PRK12904 417 DAVVEDIKERH--KKGQPVLVGTVSIEKSELLSKLLKKA---------GIPHNVLNAK--NHEREAEIIAQAGRPGAVTI 483 (830)
T ss_pred HHHHHHHHHHH--hcCCCEEEEeCcHHHHHHHHHHHHHC---------CCceEeccCc--hHHHHHHHHHhcCCCceEEE
Confidence 33444443333 35678999999999999999999876 7888999996 67888888899999999999
Q ss_pred eCCCcccccCCCCe---EEEEeCCCcc----------------ceeecCCCCccccee-eecCHHhHHHhhcccCCC-CC
Q 006122 341 STNIAETSLTLEGI---VYVVDSGFSK----------------QRFYNPISDIENLVV-APISKASARQRAGRAGRV-RP 399 (660)
Q Consensus 341 aT~i~e~Gidip~v---~~VId~g~~k----------------~~~~~~~~~~~~l~~-~~~s~~~~~QR~GRaGR~-~~ 399 (660)
|||+|++|+||+== .+.....+.. ...--...|...+.+ .+-|..-=.|-.|||||. .|
T Consensus 484 ATNmAGRGtDI~LgGn~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~GGLhVigTerhesrRid~QlrGRagRQGdp 563 (830)
T PRK12904 484 ATNMAGRGTDIKLGGNPEMLAAALLEEETEEQIAKIKAEWQEEHEEVLEAGGLHVIGTERHESRRIDNQLRGRSGRQGDP 563 (830)
T ss_pred ecccccCCcCccCCCchhhhhhhhhhhhhhHHHHHHHHHHhhhhhhHHHcCCCEEEecccCchHHHHHHhhcccccCCCC
Confidence 99999999999721 0000000000 000000122222222 256666667999999999 88
Q ss_pred cEEEEccC
Q 006122 400 GKCYRLYT 407 (660)
Q Consensus 400 G~~~~l~~ 407 (660)
|.+--+++
T Consensus 564 Gss~f~lS 571 (830)
T PRK12904 564 GSSRFYLS 571 (830)
T ss_pred CceeEEEE
Confidence 87655554
No 105
>PRK13104 secA preprotein translocase subunit SecA; Reviewed
Probab=99.82 E-value=9.4e-19 Score=195.18 Aligned_cols=124 Identities=22% Similarity=0.232 Sum_probs=86.3
Q ss_pred cCCCcHHHHHHHHHHHhcCCEEEEEcCCCCcHH--HHHHHHHHhccccCCCeEEEEeCchHHHHH--HHHHHHHHHhCCe
Q 006122 47 QRLPVYKYRTAILYLVETHATTIIVGETGSGKT--TQIPQYLKEAGWADGGRVIACTQPRRLAVQ--AVASRVAEEMGVK 122 (660)
Q Consensus 47 ~~lPi~~~~~~i~~~l~~~~~vii~apTGsGKT--~~ip~~l~~~~~~~~~~~i~v~p~r~la~~--~~~~~~~~~~~~~ 122 (660)
+.|-...+--+++-++.=++--|..++||+||| +.+|.++... .+..+.+++|++.||.+ .+...+.+.+|..
T Consensus 77 R~lg~~~ydvQliGg~~Lh~G~Iaem~TGeGKTL~a~Lpa~~~al---~G~~V~VvTpn~yLA~qd~e~m~~l~~~lGLt 153 (896)
T PRK13104 77 RTLGLRHFDVQLIGGMVLHEGNIAEMRTGEGKTLVATLPAYLNAI---SGRGVHIVTVNDYLAKRDSQWMKPIYEFLGLT 153 (896)
T ss_pred HHcCCCcchHHHhhhhhhccCccccccCCCCchHHHHHHHHHHHh---cCCCEEEEcCCHHHHHHHHHHHHHHhcccCce
Confidence 444444444455555444444589999999999 5566554432 34568999999999988 4555667778888
Q ss_pred eeeEEeeeeeccccCCCCCceEEEechHHH-HHHHhcCCC-------CCCCcEEEEeCCC
Q 006122 123 VGEEVGYTIRFEDFTNKDLTAIKFLTDGVL-LREMMDDPL-------LTKYSVIMVDEAH 174 (660)
Q Consensus 123 ~~~~vg~~~~~~~~~~~~~~~I~v~T~~~l-l~~l~~~~~-------l~~~~~iIiDE~H 174 (660)
++..+|.....+..... .++|+|+||+.| ++.+..+.. ...+.++||||||
T Consensus 154 v~~i~gg~~~~~r~~~y-~~dIvygT~grlgfDyLrd~~~~~~~~~v~r~l~~~IvDEaD 212 (896)
T PRK13104 154 VGVIYPDMSHKEKQEAY-KADIVYGTNNEYGFDYLRDNMAFSLTDKVQRELNFAIVDEVD 212 (896)
T ss_pred EEEEeCCCCHHHHHHHh-CCCEEEECChhhhHHHHhcCCccchHhhhccccceEEeccHh
Confidence 88887743332222333 689999999999 777765522 2689999999999
No 106
>KOG0349 consensus Putative DEAD-box RNA helicase DDX1 [RNA processing and modification]
Probab=99.80 E-value=3.4e-19 Score=177.73 Aligned_cols=289 Identities=19% Similarity=0.236 Sum_probs=184.5
Q ss_pred CeEEEEeCchHHHHHHHH--HHHHHHhC-Ceee--eEEe-eeeeccccCCCCCceEEEechHHHHHHHhcCCC-CCCCcE
Q 006122 95 GRVIACTQPRRLAVQAVA--SRVAEEMG-VKVG--EEVG-YTIRFEDFTNKDLTAIKFLTDGVLLREMMDDPL-LTKYSV 167 (660)
Q Consensus 95 ~~~i~v~p~r~la~~~~~--~~~~~~~~-~~~~--~~vg-~~~~~~~~~~~~~~~I~v~T~~~ll~~l~~~~~-l~~~~~ 167 (660)
...|++-|+|+++.|..- +.+..... -.+. ..+| ...+.......+.++|+++||+++++.+..... +....+
T Consensus 287 p~avivepsrelaEqt~N~i~~Fk~h~~np~~r~lLmiggv~~r~Q~~ql~~g~~ivvGtpgRl~~~is~g~~~lt~crF 366 (725)
T KOG0349|consen 287 PEAVIVEPSRELAEQTHNQIEEFKMHTSNPEVRSLLMIGGVLKRTQCKQLKDGTHIVVGTPGRLLQPISKGLVTLTHCRF 366 (725)
T ss_pred cceeEecCcHHHHHHHHhhHHHHHhhcCChhhhhhhhhhhHHhHHHHHHhhcCceeeecCchhhhhhhhccceeeeeeEE
Confidence 457999999999887332 22332221 1111 2233 333333333445799999999999998877654 889999
Q ss_pred EEEeCCCcCC--cChhHHHHHHHHHHHhc---CCceEEEeeccc---chHHHHHHhhcCCCCCCCcccccCCCCCCeEEE
Q 006122 168 IMVDEAHERS--ISTDILLGLLKKIQRCR---SDLRLIISSATI---EAKSMSAFFHARKGRRGLEGVELVPRLEPAILS 239 (660)
Q Consensus 168 iIiDE~Her~--~~~d~ll~~l~~~~~~~---~~~kii~~SAT~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 239 (660)
+|+||++-.. .++|++..+...+.... ..++.+++|||+ ++..+.+-...-|.-..+......+.....++.
T Consensus 367 lvlDead~lL~qgy~d~I~r~h~qip~~tsdg~rlq~~vCsatlh~feVkk~~ervmhfptwVdLkgeD~vpetvHhvv~ 446 (725)
T KOG0349|consen 367 LVLDEADLLLGQGYDDKIYRFHGQIPHMTSDGFRLQSPVCSATLHIFEVKKVGERVMHFPTWVDLKGEDLVPETVHHVVK 446 (725)
T ss_pred EEecchhhhhhcccHHHHHHHhccchhhhcCCcccccceeeeEEeEEEeeehhhhhccCceeEecccccccchhhcccee
Confidence 9999999322 34555555554444433 458899999998 555555433322221112111111111111111
Q ss_pred E-----CCccc----cceE-------EecCCC-chhHHHHHHHHH-----HHHHhcCCCCcEEEEcCCHHHHHHHHHHHH
Q 006122 240 V-----EGRGF----NVQI-------HYVEEP-VSDYVQAAVSTV-----LLIHDKEPPGDILVFLTGQDDIDATIQLLT 297 (660)
Q Consensus 240 ~-----~~~~~----~v~~-------~~~~~~-~~~~~~~~~~~~-----~~~~~~~~~~~iLVF~~~~~~i~~l~~~L~ 297 (660)
. .+..- +++. +..... ..+....+...+ +.......-.+.+|||.++.++..+.+.+.
T Consensus 447 lv~p~~d~sw~~lr~~i~td~vh~kdn~~pg~~Spe~~s~a~kilkgEy~v~ai~~h~mdkaiifcrtk~dcDnLer~~~ 526 (725)
T KOG0349|consen 447 LVCPSVDGSWCDLRQFIETDKVHTKDNLLPGQVSPENPSSATKILKGEYGVVAIRRHAMDKAIIFCRTKQDCDNLERMMN 526 (725)
T ss_pred ecCCccCccHHHHhhhhccCCcccccccccccCCCCChhhhhHHhcCchhhhhhhhhccCceEEEEeccccchHHHHHHH
Confidence 0 00000 0000 000000 001111111111 111122344679999999999999999888
Q ss_pred HHhhhccCCCCCeEEEEccCCCCHHHHhhhcCCCCCCCcEEEEeCCCcccccCCCCeEEEEeCCCccceeecCCCCcccc
Q 006122 298 EEARTSKKNSSGLIILPLYSGLSRAEQEQVFSPTPRGKRKVVISTNIAETSLTLEGIVYVVDSGFSKQRFYNPISDIENL 377 (660)
Q Consensus 298 ~~~~~~~~~~~~~~v~~lh~~l~~~~r~~v~~~f~~g~~~vlvaT~i~e~Gidip~v~~VId~g~~k~~~~~~~~~~~~l 377 (660)
+. +...+...++||+..+.||++-++.|+.+..+.++||+++++|+||.++-++|+.-+
T Consensus 527 qk------gg~~~scvclhgDrkP~Erk~nle~Fkk~dvkflictdvaargldi~g~p~~invtl--------------- 585 (725)
T KOG0349|consen 527 QK------GGKHYSCVCLHGDRKPDERKANLESFKKFDVKFLICTDVAARGLDITGLPFMINVTL--------------- 585 (725)
T ss_pred Hc------CCccceeEEEecCCChhHHHHHHHhhhhcCeEEEEEehhhhccccccCCceEEEEec---------------
Confidence 76 334789999999999999999999999999999999999999999999999999655
Q ss_pred eeeecCHHhHHHhhcccCCC-CCcEEEEccC
Q 006122 378 VVAPISKASARQRAGRAGRV-RPGKCYRLYT 407 (660)
Q Consensus 378 ~~~~~s~~~~~QR~GRaGR~-~~G~~~~l~~ 407 (660)
|-.+.+|.||+||+||. +-|.++.|+.
T Consensus 586 ---pd~k~nyvhrigrvgraermglaislva 613 (725)
T KOG0349|consen 586 ---PDDKTNYVHRIGRVGRAERMGLAISLVA 613 (725)
T ss_pred ---CcccchhhhhhhccchhhhcceeEEEee
Confidence 88899999999999999 8899888864
No 107
>KOG0921 consensus Dosage compensation complex, subunit MLE [Transcription]
Probab=99.79 E-value=6.1e-21 Score=204.83 Aligned_cols=442 Identities=7% Similarity=-0.166 Sum_probs=310.7
Q ss_pred cCCCcHHHHHHHHHHHhcCCEEEEEcCCCCcHHHHHHHHHHhccccCC---CeEEEEeCchHHHHHHHHHHHHHHhCCee
Q 006122 47 QRLPVYKYRTAILYLVETHATTIIVGETGSGKTTQIPQYLKEAGWADG---GRVIACTQPRRLAVQAVASRVAEEMGVKV 123 (660)
Q Consensus 47 ~~lPi~~~~~~i~~~l~~~~~vii~apTGsGKT~~ip~~l~~~~~~~~---~~~i~v~p~r~la~~~~~~~~~~~~~~~~ 123 (660)
.-+|..+....|++++..+.++++.+.|||||+++.|+.+++.-.... -.-++.+++|...+..++.+..-+.++.+
T Consensus 403 gcgk~tq~aq~iLe~~~~ns~g~~~na~v~qprrisaisiaerva~er~e~~g~tvgy~vRf~Sa~prpyg~i~fctvgv 482 (1282)
T KOG0921|consen 403 GCGKSTQVAQFLLESFLENSNGASFNAVVSQPRRISAISLAERVANERGEEVGETCGYNVRFDSATPRPYGSIMFCTVGV 482 (1282)
T ss_pred cccchhHHHHHHHHHHhhccccccccceeccccccchHHHHHHHHHhhHHhhcccccccccccccccccccceeeeccch
Confidence 347899999999999999999999999999999999999988744322 12378899999988887777776666666
Q ss_pred eeEEeeeeeccccCCCCCceEEEechHHHHHHHhcCCCCCCCcEEEEeCCCcCCcChhHHHHHHHHHHHhcCCceEEEee
Q 006122 124 GEEVGYTIRFEDFTNKDLTAIKFLTDGVLLREMMDDPLLTKYSVIMVDEAHERSISTDILLGLLKKIQRCRSDLRLIISS 203 (660)
Q Consensus 124 ~~~vg~~~~~~~~~~~~~~~I~v~T~~~ll~~l~~~~~l~~~~~iIiDE~Her~~~~d~ll~~l~~~~~~~~~~kii~~S 203 (660)
+...+|..++......-...+..+|.+.++..+..+ .....+.+.||.|+++++||++..++..+ .++.+++
T Consensus 483 llr~~e~glrg~sh~i~deiherdv~~dfll~~lr~--m~~ty~dl~v~lmsatIdTd~f~~~f~~~------p~~~~~g 554 (1282)
T KOG0921|consen 483 LLRMMENGLRGISHVIIDEIHERDVDTDFVLIVLRE--MISTYRDLRVVLMSATIDTDLFTNFFSSI------PDVTVHG 554 (1282)
T ss_pred hhhhhhhcccccccccchhhhhhccchHHHHHHHHh--hhccchhhhhhhhhcccchhhhhhhhccc------cceeecc
Confidence 666677776665443325667788888888776553 44567889999999999999999888764 4458999
Q ss_pred cccchHHHHHHhhcCCCCCCCcccc-----cCCCCCCeEEEECCccccce--EEe------------cCCCchhHHHHHH
Q 006122 204 ATIEAKSMSAFFHARKGRRGLEGVE-----LVPRLEPAILSVEGRGFNVQ--IHY------------VEEPVSDYVQAAV 264 (660)
Q Consensus 204 AT~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~v~--~~~------------~~~~~~~~~~~~~ 264 (660)
+|.+...|-.++-..+......... ......+....-.++.+... ..| ..+.....++...
T Consensus 555 rt~pvq~F~led~~~~~~~vp~~~~~~k~k~~~~~~~~~~ddK~~n~n~~~dd~~~~~~~~am~~~se~d~~f~l~Eal~ 634 (1282)
T KOG0921|consen 555 RTFPVQSFFLEDIIQMTQFVPSEPSQKKRKKDDDEEDEEVDDKGRNMNILCDPSYNESTRTAMSRLSEKDIPFGLIEALL 634 (1282)
T ss_pred ccccHHHHHHHHhhhhhhccCCCcCccchhhcccccCchhhhcccccccccChhhcchhhhhhhcchhhcchhHHHHHHH
Confidence 9999988765554433111000000 00000000000000000000 000 0012233333333
Q ss_pred HHHHH------HHhcCCCCcEEEEcCCHHHHHHHHHHHHHHhhhccCCCCCeEEEEccCCCCHHHHhhhcCCCCCCCcEE
Q 006122 265 STVLL------IHDKEPPGDILVFLTGQDDIDATIQLLTEEARTSKKNSSGLIILPLYSGLSRAEQEQVFSPTPRGKRKV 338 (660)
Q Consensus 265 ~~~~~------~~~~~~~~~iLVF~~~~~~i~~l~~~L~~~~~~~~~~~~~~~v~~lh~~l~~~~r~~v~~~f~~g~~~v 338 (660)
..+.. +..-.+++..|+|++.+.-.......+.+.- . -......+...|..+...++..+.+....+.+++
T Consensus 635 ~~i~s~~i~gailvflpgwa~i~~L~~~ll~~~~fg~~~~y~-i--lp~Hsq~~~~eqrkvf~~~p~gv~kii~stniae 711 (1282)
T KOG0921|consen 635 NDIASRNIDGAVLVFLPGWAEIMTLCNRLLEHQEFGQANKYE-I--LPLHSQLTSQEQRKVFEPVPEGVTKIILSTNIAE 711 (1282)
T ss_pred hhhcccCCccceeeecCchHHhhhhhhhhhhhhhhccchhcc-c--ccchhhcccHhhhhccCcccccccccccccceee
Confidence 32221 1223577889999999988777666665431 1 1233567888899999999999999999999999
Q ss_pred EEeCCCcccccCCCCeEEEEeCCCccceeecCCCCcccceeeecCHHhHHHhhcccCCCCCcEEEEccChHHhhhhCCCC
Q 006122 339 VISTNIAETSLTLEGIVYVVDSGFSKQRFYNPISDIENLVVAPISKASARQRAGRAGRVRPGKCYRLYTEEYFVKEIPAE 418 (660)
Q Consensus 339 lvaT~i~e~Gidip~v~~VId~g~~k~~~~~~~~~~~~l~~~~~s~~~~~QR~GRaGR~~~G~~~~l~~~~~~~~~~~~~ 418 (660)
...|...++.+.+.+..+|++++-.+...+-....++...+.|.+...-.||.||++|...+.||.+.+...+.. |..+
T Consensus 712 tsiTidd~v~vid~cka~~~~~~s~nn~~~~Atvw~sktn~eqr~gr~grvR~G~~f~lcs~arF~~l~~~~t~e-m~r~ 790 (1282)
T KOG0921|consen 712 TSITIDDVVYVIDSCKAKEKLFTSHNNMTHYATVWASKTNLEQRKGRAGRVRPGFCFHLCSRARFEALEDHGTAE-MFRT 790 (1282)
T ss_pred EeeeecceeEEEeeeeeeeeeeccccceeeeeeecccccchHhhcccCceecccccccccHHHHHHHHHhcCcHh-hhcC
Confidence 999999999999999999999999999988888888888888999999999999999999999999999999888 9999
Q ss_pred CCCccccccchhHHHHHHHcCCCCccCCCC--CCCCCHHHHHHHHHHHHHCCCCCCCC--CcchHHHHHhccCCCChhhh
Q 006122 419 GIPEMQRSNLVSCVIQLKALGIDNILGFDW--PASPPPEAMIRALEVLYSLGVLDDDA--KLTSPTGFQVAEIPLEPMIS 494 (660)
Q Consensus 419 ~~pei~~~~l~~~~l~l~~~~~~~~~~~~~--~~~p~~~~~~~al~~L~~lgald~~~--~lT~~lG~~~~~lpl~p~~~ 494 (660)
+.+|+.+......++.++.+-...+..++. +.+|+.... .+..|...+.+...| ..+ ++|+.....|+.+..+
T Consensus 791 plhemalTikll~l~SI~~fl~kal~~~p~dav~e~e~~l~--~m~~ld~n~elt~lg~~la~-l~iep~~~k~~~lg~~ 867 (1282)
T KOG0921|consen 791 PLHEIALTIKLLRLGSIGEFLGKALQPPPYDAVIEAEAVLR--EMGALDANDELTPLGRMLAR-LPIEPRIGKMMILGTA 867 (1282)
T ss_pred ccHHHHhhHHHHHhhhHHHHHhhccCCCchhhccCchHHHH--HhhhhhccCcccchhhhhhh-ccCcccccceeeechh
Confidence 999999887777666666654444444433 444444433 333444444444334 567 7899999999999998
Q ss_pred HHHHhhccc
Q 006122 495 KMILSSNEL 503 (660)
Q Consensus 495 ~~l~~~~~~ 503 (660)
++......+
T Consensus 868 ~g~~~~m~~ 876 (1282)
T KOG0921|consen 868 LGAGSVMCD 876 (1282)
T ss_pred hccchhhhh
Confidence 877665443
No 108
>COG1203 CRISPR-associated helicase Cas3 [Defense mechanisms]
Probab=99.78 E-value=7e-18 Score=192.67 Aligned_cols=313 Identities=19% Similarity=0.195 Sum_probs=171.7
Q ss_pred CcHHHHHHHHHHHhc---CC-EEEEEcCCCCcHHHHHHHHHHhc--c-ccCCCeEEEEeCchHHHHHHHHHHHHHHhCC-
Q 006122 50 PVYKYRTAILYLVET---HA-TTIIVGETGSGKTTQIPQYLKEA--G-WADGGRVIACTQPRRLAVQAVASRVAEEMGV- 121 (660)
Q Consensus 50 Pi~~~~~~i~~~l~~---~~-~vii~apTGsGKT~~ip~~l~~~--~-~~~~~~~i~v~p~r~la~~~~~~~~~~~~~~- 121 (660)
+.+..|..+++.+.. .. .+++.||||+|||++...+.... . .....+.|++.|.|.+ .....+++....+.
T Consensus 195 ~~~~~~~~~~~~~~~~~~~~~~~vl~aPTG~GKT~asl~~a~~~~~~~~~~~~r~i~vlP~~t~-ie~~~~r~~~~~~~~ 273 (733)
T COG1203 195 EGYELQEKALELILRLEKRSLLVVLEAPTGYGKTEASLILALALLDEKIKLKSRVIYVLPFRTI-IEDMYRRAKEIFGLF 273 (733)
T ss_pred hhhHHHHHHHHHHHhcccccccEEEEeCCCCChHHHHHHHHHHHhhccccccceEEEEccHHHH-HHHHHHHHHhhhccc
Confidence 456677777766543 34 89999999999995443333222 1 1134555666555544 44555555543322
Q ss_pred -eeee-EEeeeee-----cc-----ccCCCC-----CceEEEechHHHHHHHhcCCC-C----CCCcEEEEeCCCcCCcC
Q 006122 122 -KVGE-EVGYTIR-----FE-----DFTNKD-----LTAIKFLTDGVLLREMMDDPL-L----TKYSVIMVDEAHERSIS 179 (660)
Q Consensus 122 -~~~~-~vg~~~~-----~~-----~~~~~~-----~~~I~v~T~~~ll~~l~~~~~-l----~~~~~iIiDE~Her~~~ 179 (660)
..+. ..|.... .+ .....+ -..+.++|+-........... . --.+++|+||+|-..-+
T Consensus 274 ~~~~~~~h~~~~~~~~~~~~~~~~~~~~~~ds~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~S~vIlDE~h~~~~~ 353 (733)
T COG1203 274 SVIGKSLHSSSKEPLLLEPDQDILLTLTTNDSYKKLLLALIVVTPIQILIFSVKGFKFEFLALLLTSLVILDEVHLYADE 353 (733)
T ss_pred ccccccccccccchhhhccccccceeEEecccccceeccccccCHhHhhhhhccccchHHHHHHHhhchhhccHHhhccc
Confidence 1111 1221100 00 000000 122334444333332111111 1 23489999999944333
Q ss_pred --hhHHHHHHHHHHHhcCCceEEEeecccchH---HHHHHhhcCCCCCCCcccccCCCCCCeEEEECCccccceEEecCC
Q 006122 180 --TDILLGLLKKIQRCRSDLRLIISSATIEAK---SMSAFFHARKGRRGLEGVELVPRLEPAILSVEGRGFNVQIHYVEE 254 (660)
Q Consensus 180 --~d~ll~~l~~~~~~~~~~kii~~SAT~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~ 254 (660)
..++++++..+. .-+.++|+||||++.. .+..+++........ . ........ ..+.......
T Consensus 354 ~~~~~l~~~i~~l~--~~g~~ill~SATlP~~~~~~l~~~~~~~~~~~~~-----~-----~~~~~~~e-~~~~~~~~~~ 420 (733)
T COG1203 354 TMLAALLALLEALA--EAGVPVLLMSATLPPFLKEKLKKALGKGREVVEN-----A-----KFCPKEDE-PGLKRKERVD 420 (733)
T ss_pred chHHHHHHHHHHHH--hCCCCEEEEecCCCHHHHHHHHHHHhcccceecc-----c-----cccccccc-cccccccchh
Confidence 233444444433 3478899999999654 333444332210000 0 00000000 0000000000
Q ss_pred CchhHHHHHHHHHHHHHhcCCCCcEEEEcCCHHHHHHHHHHHHHHhhhccCCCCCeEEEEccCCCCHHHHhhhcCCC---
Q 006122 255 PVSDYVQAAVSTVLLIHDKEPPGDILVFLTGQDDIDATIQLLTEEARTSKKNSSGLIILPLYSGLSRAEQEQVFSPT--- 331 (660)
Q Consensus 255 ~~~~~~~~~~~~~~~~~~~~~~~~iLVF~~~~~~i~~l~~~L~~~~~~~~~~~~~~~v~~lh~~l~~~~r~~v~~~f--- 331 (660)
.......... .........+++++|-+||++.+.++++.|++. ...+..+||.+...+|.+.++.+
T Consensus 421 ~~~~~~~~~~--~~~~~~~~~~~kvlvI~NTV~~Aie~Y~~Lk~~---------~~~v~LlHSRf~~~dR~~ke~~l~~~ 489 (733)
T COG1203 421 VEDGPQEELI--ELISEEVKEGKKVLVIVNTVDRAIELYEKLKEK---------GPKVLLLHSRFTLKDREEKERELKKL 489 (733)
T ss_pred hhhhhhHhhh--hcchhhhccCCcEEEEEecHHHHHHHHHHHHhc---------CCCEEEEecccchhhHHHHHHHHHHH
Confidence 0000000001 111122346788999999999999999999876 22799999999999998877632
Q ss_pred -CCCCcEEEEeCCCcccccCCCCeEEEEeCCCccceeecCCCCcccceeeecCHHhHHHhhcccCCCC---CcEEEEccC
Q 006122 332 -PRGKRKVVISTNIAETSLTLEGIVYVVDSGFSKQRFYNPISDIENLVVAPISKASARQRAGRAGRVR---PGKCYRLYT 407 (660)
Q Consensus 332 -~~g~~~vlvaT~i~e~Gidip~v~~VId~g~~k~~~~~~~~~~~~l~~~~~s~~~~~QR~GRaGR~~---~G~~~~l~~ 407 (660)
+.+...|+|||++.|.|+|+. .+++| +.+.+..+..||+||++|.+ +|..|....
T Consensus 490 ~~~~~~~IvVaTQVIEagvDid-fd~mI--------------------Te~aPidSLIQR~GRv~R~g~~~~~~~~v~~~ 548 (733)
T COG1203 490 FKQNEGFIVVATQVIEAGVDID-FDVLI--------------------TELAPIDSLIQRAGRVNRHGKKENGKIYVYND 548 (733)
T ss_pred HhccCCeEEEEeeEEEEEeccc-cCeee--------------------ecCCCHHHHHHHHHHHhhcccccCCceeEeec
Confidence 456889999999999999987 44444 55788899999999999984 566655544
Q ss_pred h
Q 006122 408 E 408 (660)
Q Consensus 408 ~ 408 (660)
.
T Consensus 549 ~ 549 (733)
T COG1203 549 E 549 (733)
T ss_pred c
Confidence 3
No 109
>PRK13107 preprotein translocase subunit SecA; Reviewed
Probab=99.75 E-value=9.3e-17 Score=178.78 Aligned_cols=80 Identities=20% Similarity=0.186 Sum_probs=69.7
Q ss_pred HHHHHHHHHHHHhcCCCCcEEEEcCCHHHHHHHHHHHHHHhhhccCCCCCeEEEEccCCCCHHHHhhhcCCCCCCCcEEE
Q 006122 260 VQAAVSTVLLIHDKEPPGDILVFLTGQDDIDATIQLLTEEARTSKKNSSGLIILPLYSGLSRAEQEQVFSPTPRGKRKVV 339 (660)
Q Consensus 260 ~~~~~~~~~~~~~~~~~~~iLVF~~~~~~i~~l~~~L~~~~~~~~~~~~~~~v~~lh~~l~~~~r~~v~~~f~~g~~~vl 339 (660)
....+..+..++. .+.++||||.+.+..+.++..|.+. ++....+|+..+..++..+.+.++.|. |+
T Consensus 435 ~~Aii~ei~~~~~--~GrpVLV~t~sv~~se~ls~~L~~~---------gi~~~vLnak~~~~Ea~ii~~Ag~~G~--Vt 501 (908)
T PRK13107 435 YQAIIKDIKDCRE--RGQPVLVGTVSIEQSELLARLMVKE---------KIPHEVLNAKFHEREAEIVAQAGRTGA--VT 501 (908)
T ss_pred HHHHHHHHHHHHH--cCCCEEEEeCcHHHHHHHHHHHHHC---------CCCeEeccCcccHHHHHHHHhCCCCCc--EE
Confidence 3455666666664 4677999999999999999999876 788889999999999999999999988 99
Q ss_pred EeCCCcccccCCC
Q 006122 340 ISTNIAETSLTLE 352 (660)
Q Consensus 340 vaT~i~e~Gidip 352 (660)
||||+|++|.||.
T Consensus 502 IATnmAGRGTDIk 514 (908)
T PRK13107 502 IATNMAGRGTDIV 514 (908)
T ss_pred EecCCcCCCccee
Confidence 9999999999986
No 110
>COG1198 PriA Primosomal protein N' (replication factor Y) - superfamily II helicase [DNA replication, recombination, and repair]
Probab=99.75 E-value=3.2e-17 Score=181.37 Aligned_cols=320 Identities=19% Similarity=0.219 Sum_probs=191.6
Q ss_pred CCCcHHHHHHHHHHHhcC----CEEEEEcCCCCcHHHHHHHHHHhccccCCCeEEEEeCchHHHHHHHHHHHHHHhCCee
Q 006122 48 RLPVYKYRTAILYLVETH----ATTIIVGETGSGKTTQIPQYLKEAGWADGGRVIACTQPRRLAVQAVASRVAEEMGVKV 123 (660)
Q Consensus 48 ~lPi~~~~~~i~~~l~~~----~~vii~apTGsGKT~~ip~~l~~~~~~~~~~~i~v~p~r~la~~~~~~~~~~~~~~~~ 123 (660)
.+.+...|..+.+.+.+. ...++.|.||||||-..-+++... ...++.+++++|..++.-| +.+|+...+|.++
T Consensus 196 ~~~Ln~~Q~~a~~~i~~~~~~~~~~Ll~GvTGSGKTEvYl~~i~~~-L~~GkqvLvLVPEI~Ltpq-~~~rf~~rFg~~v 273 (730)
T COG1198 196 WLALNQEQQAAVEAILSSLGGFAPFLLDGVTGSGKTEVYLEAIAKV-LAQGKQVLVLVPEIALTPQ-LLARFKARFGAKV 273 (730)
T ss_pred ccccCHHHHHHHHHHHHhcccccceeEeCCCCCcHHHHHHHHHHHH-HHcCCEEEEEeccccchHH-HHHHHHHHhCCCh
Confidence 456777888888887655 689999999999995555555443 4466789999999988775 4556666777766
Q ss_pred eeEEeeeee-----ccccCCCCCceEEEechHHHHHHHhcCCCCCCCcEEEEeCCCcCCcChhH----HHHHHHHHHHhc
Q 006122 124 GEEVGYTIR-----FEDFTNKDLTAIKFLTDGVLLREMMDDPLLTKYSVIMVDEAHERSISTDI----LLGLLKKIQRCR 194 (660)
Q Consensus 124 ~~~vg~~~~-----~~~~~~~~~~~I~v~T~~~ll~~l~~~~~l~~~~~iIiDE~Her~~~~d~----ll~~l~~~~~~~ 194 (660)
+.....-.. .......+..+|+++|-..+.-- +.++++|||||-|+-+...+- -.--+..++...
T Consensus 274 ~vlHS~Ls~~er~~~W~~~~~G~~~vVIGtRSAlF~P------f~~LGLIIvDEEHD~sYKq~~~prYhARdvA~~Ra~~ 347 (730)
T COG1198 274 AVLHSGLSPGERYRVWRRARRGEARVVIGTRSALFLP------FKNLGLIIVDEEHDSSYKQEDGPRYHARDVAVLRAKK 347 (730)
T ss_pred hhhcccCChHHHHHHHHHHhcCCceEEEEechhhcCc------hhhccEEEEeccccccccCCcCCCcCHHHHHHHHHHH
Confidence 554431111 11122233789999998776532 778999999999964433211 111122222334
Q ss_pred CCceEEEeecccchHHHHHHhhcCCCCCCCccccc-C-CCCCCeEEEECCccccceEEecCCCchhHHHHHHHHHHHHHh
Q 006122 195 SDLRLIISSATIEAKSMSAFFHARKGRRGLEGVEL-V-PRLEPAILSVEGRGFNVQIHYVEEPVSDYVQAAVSTVLLIHD 272 (660)
Q Consensus 195 ~~~kii~~SAT~~~~~~~~~~~~~~~~~~~~~~~~-~-~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~ 272 (660)
.+..+|+-|||+..+.+.+-..+... ...... . ....+.+..++-+..+.+.... ....+++.+..-.
T Consensus 348 ~~~pvvLgSATPSLES~~~~~~g~y~---~~~L~~R~~~a~~p~v~iiDmr~e~~~~~~~------lS~~Ll~~i~~~l- 417 (730)
T COG1198 348 ENAPVVLGSATPSLESYANAESGKYK---LLRLTNRAGRARLPRVEIIDMRKEPLETGRS------LSPALLEAIRKTL- 417 (730)
T ss_pred hCCCEEEecCCCCHHHHHhhhcCceE---EEEccccccccCCCcceEEeccccccccCcc------CCHHHHHHHHHHH-
Confidence 57889999999998877765332110 000000 0 0001111111111111111000 1111122111111
Q ss_pred cCCCCcEEEEcCCHH------------------------------------------------------------HHHHH
Q 006122 273 KEPPGDILVFLTGQD------------------------------------------------------------DIDAT 292 (660)
Q Consensus 273 ~~~~~~iLVF~~~~~------------------------------------------------------------~i~~l 292 (660)
+.+.++|+|+|.+. .+|++
T Consensus 418 -~~geQ~llflnRRGys~~l~C~~Cg~v~~Cp~Cd~~lt~H~~~~~L~CH~Cg~~~~~p~~Cp~Cgs~~L~~~G~Gteri 496 (730)
T COG1198 418 -ERGEQVLLFLNRRGYAPLLLCRDCGYIAECPNCDSPLTLHKATGQLRCHYCGYQEPIPQSCPECGSEHLRAVGPGTERI 496 (730)
T ss_pred -hcCCeEEEEEccCCccceeecccCCCcccCCCCCcceEEecCCCeeEeCCCCCCCCCCCCCCCCCCCeeEEecccHHHH
Confidence 23334555555444 23666
Q ss_pred HHHHHHHhhhccCCCCCeEEEEccCCCCHHH--HhhhcCCCCCCCcEEEEeCCCcccccCCCCeEEEE----eCCCccce
Q 006122 293 IQLLTEEARTSKKNSSGLIILPLYSGLSRAE--QEQVFSPTPRGKRKVVISTNIAETSLTLEGIVYVV----DSGFSKQR 366 (660)
Q Consensus 293 ~~~L~~~~~~~~~~~~~~~v~~lh~~l~~~~--r~~v~~~f~~g~~~vlvaT~i~e~Gidip~v~~VI----d~g~~k~~ 366 (660)
.+.|.+.+ |+..+..+.++..... -+..+..|.+|+.+|||.|.+++.|.|+|+++.|. |.++
T Consensus 497 eeeL~~~F-------P~~rv~r~d~Dtt~~k~~~~~~l~~~~~ge~dILiGTQmiaKG~~fp~vtLVgvl~aD~~L---- 565 (730)
T COG1198 497 EEELKRLF-------PGARIIRIDSDTTRRKGALEDLLDQFANGEADILIGTQMIAKGHDFPNVTLVGVLDADTGL---- 565 (730)
T ss_pred HHHHHHHC-------CCCcEEEEccccccchhhHHHHHHHHhCCCCCeeecchhhhcCCCcccceEEEEEechhhh----
Confidence 67777665 4777888888765433 34678889999999999999999999999999874 4444
Q ss_pred eecCCCCcccceeeecCHHhHHHhhcccCCC-CCcEEE
Q 006122 367 FYNPISDIENLVVAPISKASARQRAGRAGRV-RPGKCY 403 (660)
Q Consensus 367 ~~~~~~~~~~l~~~~~s~~~~~QR~GRaGR~-~~G~~~ 403 (660)
+.+. +....-....+.|=+|||||. .+|.++
T Consensus 566 -~~~D-----fRA~Er~fqll~QvaGRAgR~~~~G~Vv 597 (730)
T COG1198 566 -GSPD-----FRASERTFQLLMQVAGRAGRAGKPGEVV 597 (730)
T ss_pred -cCCC-----cchHHHHHHHHHHHHhhhccCCCCCeEE
Confidence 2222 222233456677999999998 888654
No 111
>COG4096 HsdR Type I site-specific restriction-modification system, R (restriction) subunit and related helicases [Defense mechanisms]
Probab=99.74 E-value=2.7e-16 Score=170.67 Aligned_cols=340 Identities=16% Similarity=0.174 Sum_probs=186.4
Q ss_pred HHHHHhcCC-EEEEEcCCCCcHHHHHHHHHHhccc-cCCCeEEEEeCchHHHHHHHHHHHHHHhC-Ce-eeeEEeeeeec
Q 006122 58 ILYLVETHA-TTIIVGETGSGKTTQIPQYLKEAGW-ADGGRVIACTQPRRLAVQAVASRVAEEMG-VK-VGEEVGYTIRF 133 (660)
Q Consensus 58 i~~~l~~~~-~vii~apTGsGKT~~ip~~l~~~~~-~~~~~~i~v~p~r~la~~~~~~~~~~~~~-~~-~~~~vg~~~~~ 133 (660)
+.+++.+|+ -+++++.||+|||..+-+++..... ..-+++++++-.+.|..|.... +..... .. +-...++
T Consensus 177 v~Eaf~~g~~raLlvMATGTGKTrTAiaii~rL~r~~~~KRVLFLaDR~~Lv~QA~~a-f~~~~P~~~~~n~i~~~---- 251 (875)
T COG4096 177 VIEAFSKGQNRALLVMATGTGKTRTAIAIIDRLIKSGWVKRVLFLADRNALVDQAYGA-FEDFLPFGTKMNKIEDK---- 251 (875)
T ss_pred HHHHHhcCCceEEEEEecCCCcceeHHHHHHHHHhcchhheeeEEechHHHHHHHHHH-HHHhCCCccceeeeecc----
Confidence 345555543 4899999999999433333332211 1235678888888887776644 333321 11 1111111
Q ss_pred cccCCCCCceEEEechHHHHHHHhcC-C----C-CCCCcEEEEeCCCcCCcChhHHHHHHHHHHHhcCCceEEEeecccc
Q 006122 134 EDFTNKDLTAIKFLTDGVLLREMMDD-P----L-LTKYSVIMVDEAHERSISTDILLGLLKKIQRCRSDLRLIISSATIE 207 (660)
Q Consensus 134 ~~~~~~~~~~I~v~T~~~ll~~l~~~-~----~-l~~~~~iIiDE~Her~~~~d~ll~~l~~~~~~~~~~kii~~SAT~~ 207 (660)
.... .++|.++|.+.+.....+. . . ...+++||||||| |++..+.- .++..+ +...++++||+.
T Consensus 252 --~~~~-s~~i~lsTyqt~~~~~~~~~~~~~~f~~g~FDlIvIDEaH-Rgi~~~~~-~I~dYF-----dA~~~gLTATP~ 321 (875)
T COG4096 252 --KGDT-SSEIYLSTYQTMTGRIEQKEDEYRRFGPGFFDLIVIDEAH-RGIYSEWS-SILDYF-----DAATQGLTATPK 321 (875)
T ss_pred --cCCc-ceeEEEeehHHHHhhhhccccccccCCCCceeEEEechhh-hhHHhhhH-HHHHHH-----HHHHHhhccCcc
Confidence 1122 5799999999998877554 1 2 5568999999999 88765432 222222 222455599982
Q ss_pred h-HH--HHHHhhcCCCCC-CCcc-cccCCCCCCeEEEECCc------cc-cc----eE----------EecCC------C
Q 006122 208 A-KS--MSAFFHARKGRR-GLEG-VELVPRLEPAILSVEGR------GF-NV----QI----------HYVEE------P 255 (660)
Q Consensus 208 ~-~~--~~~~~~~~~~~~-~~~~-~~~~~~~~~~~~~~~~~------~~-~v----~~----------~~~~~------~ 255 (660)
. .. --.||++.|+.. ++.. +....-.++.++.++-+ .+ .. +. .|... .
T Consensus 322 ~~~d~~T~~~F~g~Pt~~YsleeAV~DGfLvpy~vi~i~~~~~~~G~~~~~~serek~~g~~i~~dd~~~~~~d~dr~~v 401 (875)
T COG4096 322 ETIDRSTYGFFNGEPTYAYSLEEAVEDGFLVPYKVIRIDTDFDLDGWKPDAGSEREKLQGEAIDEDDQNFEARDFDRTLV 401 (875)
T ss_pred cccccccccccCCCcceeecHHHHhhccccCCCCceEEeeeccccCcCcCccchhhhhhccccCcccccccccccchhcc
Confidence 2 22 235675443221 1111 00001111222222111 10 00 00 00000 0
Q ss_pred chhHHHHHHHHHHHHHhc--CC--CCcEEEEcCCHHHHHHHHHHHHHHhhhccCCCCCeEEEEccCCCCHHHHhhhcCCC
Q 006122 256 VSDYVQAAVSTVLLIHDK--EP--PGDILVFLTGQDDIDATIQLLTEEARTSKKNSSGLIILPLYSGLSRAEQEQVFSPT 331 (660)
Q Consensus 256 ~~~~~~~~~~~~~~~~~~--~~--~~~iLVF~~~~~~i~~l~~~L~~~~~~~~~~~~~~~v~~lh~~l~~~~r~~v~~~f 331 (660)
.....+.....+...+.. .. .+++||||.+..+++.+...|.+..+. ..+-.+..+.+.-... +..+ ..|
T Consensus 402 ~~~~~~~V~r~~~~~l~~~~~g~~~~KTIvFa~n~dHAe~i~~~~~~~ype----~~~~~a~~IT~d~~~~-q~~I-d~f 475 (875)
T COG4096 402 IPFRTETVARELTEYLKRGATGDEIGKTIVFAKNHDHAERIREALVNEYPE----YNGRYAMKITGDAEQA-QALI-DNF 475 (875)
T ss_pred ccchHHHHHHHHHHHhccccCCCccCceEEEeeCcHHHHHHHHHHHHhCcc----ccCceEEEEeccchhh-HHHH-HHH
Confidence 011122333344444443 22 578999999999999999999887654 2234455566554332 2222 223
Q ss_pred --CCCCcEEEEeCCCcccccCCCCeEEEEeCCCccceeecCCCCcccceeeecCHHhHHHhhcccCCCCC--c------E
Q 006122 332 --PRGKRKVVISTNIAETSLTLEGIVYVVDSGFSKQRFYNPISDIENLVVAPISKASARQRAGRAGRVRP--G------K 401 (660)
Q Consensus 332 --~~g~~~vlvaT~i~e~Gidip~v~~VId~g~~k~~~~~~~~~~~~l~~~~~s~~~~~QR~GRaGR~~~--G------~ 401 (660)
++.-.+|.++.+++.+|||+|.|..+|..-. -.|+.-|+||+||+-|..+ | .
T Consensus 476 ~~ke~~P~IaitvdlL~TGiDvpev~nlVF~r~------------------VrSktkF~QMvGRGTRl~~~~~~~~~dK~ 537 (875)
T COG4096 476 IDKEKYPRIAITVDLLTTGVDVPEVVNLVFDRK------------------VRSKTKFKQMVGRGTRLCPDLGGPEQDKE 537 (875)
T ss_pred HhcCCCCceEEehhhhhcCCCchheeeeeehhh------------------hhhHHHHHHHhcCccccCccccCccccce
Confidence 3445789999999999999999988885322 4589999999999999822 2 2
Q ss_pred EEEccC---hHHhhhhCCCCCCCccccccchhHHHHHHH
Q 006122 402 CYRLYT---EEYFVKEIPAEGIPEMQRSNLVSCVIQLKA 437 (660)
Q Consensus 402 ~~~l~~---~~~~~~~~~~~~~pei~~~~l~~~~l~l~~ 437 (660)
.|.++. .-.|-. +.+...++-.+..+..-++.-..
T Consensus 538 ~F~ifDf~~~~~~~~-~~~~~~e~~~~~~l~~rLF~~~~ 575 (875)
T COG4096 538 FFTIFDFVDNTEYFE-MDPEMREGRVRVSLEQRLFADRL 575 (875)
T ss_pred eEEEEEhhhhhhhhc-cCcccccccccchHHHHHhhhhh
Confidence 334433 333333 45555555555555554444333
No 112
>PF04408 HA2: Helicase associated domain (HA2); InterPro: IPR007502 This presumed domain is about 90 amino acid residues in length. It is found as a diverse set of RNA helicases. Its function is unknown, however it seems likely to be involved in nucleic acid binding.; GO: 0004386 helicase activity; PDB: 3I4U_A 2XAU_B 3KX2_B.
Probab=99.73 E-value=1e-17 Score=142.59 Aligned_cols=91 Identities=38% Similarity=0.740 Sum_probs=67.9
Q ss_pred HHHHHHHHCCCCCCCCCcchHHHHHhccCCCChhhhHHHHhhcccCchhHHHHHHhhcccCcccccCcchHHHHH--HHH
Q 006122 459 RALEVLYSLGVLDDDAKLTSPTGFQVAEIPLEPMISKMILSSNELGCSEEIITISAVLSIQSIWVSGRGAQKELD--EAK 536 (660)
Q Consensus 459 ~al~~L~~lgald~~~~lT~~lG~~~~~lpl~p~~~~~l~~~~~~~c~~~~~~i~a~ls~~~~f~~~~~~~~~~~--~~~ 536 (660)
+|++.|+.+||||++|++| ++|+.|+.||++|++||||+.+..++|.+++++|+|+|++.++|..+.+.++..+ ..+
T Consensus 1 ~A~~~L~~Lgald~~~~lT-~lG~~~~~lPl~p~~a~~Ll~~~~~~~~~~~~~iaa~ls~~~~f~~~~~~~~~~~~~~~~ 79 (102)
T PF04408_consen 1 KALELLKSLGALDENGNLT-PLGRKMSQLPLDPRLAKMLLYGIQFGCLDEALIIAAILSVRSPFINPDDKEENAEQDNAK 79 (102)
T ss_dssp -HHHHHHHTTSB-TTS-B--HHHHHHTTSSS-HHHHHHHHHHHHCT-HHHHHHHHHHHTSS--B---CCGHHHHHH--HH
T ss_pred CHHHHHHHCCCCCCCCCcC-HHHHHHHHCCCchHhHhHhhhccccccHHHHHHHHHHHcCCCcccCccHHHHHHHHHHHH
Confidence 4789999999999999999 7999999999999999999999999999999999999999999999765443332 233
Q ss_pred Hh---------hcCCCCcHHHHH
Q 006122 537 LR---------FAAAEGDHVTFL 550 (660)
Q Consensus 537 ~~---------~~~~~~D~~~~l 550 (660)
.+ +....|||+|+|
T Consensus 80 ~~~~~~~~~~~~~~~~sDhltlL 102 (102)
T PF04408_consen 80 KKFRIKQARKKFSDDESDHLTLL 102 (102)
T ss_dssp HTT----------BTTBHHHHHH
T ss_pred HHhhhhhcccccCCCCCCHHhcC
Confidence 33 477789999986
No 113
>cd00268 DEADc DEAD-box helicases. A diverse family of proteins involved in ATP-dependent RNA unwinding, needed in a variety of cellular processes including splicing, ribosome biogenesis and RNA degradation. The name derives from the sequence of the Walker B motif (motif II). This domain contains the ATP- binding region.
Probab=99.72 E-value=1.4e-16 Score=155.10 Aligned_cols=177 Identities=20% Similarity=0.105 Sum_probs=119.4
Q ss_pred CCCCCCCccchHhHHHHhcCCCcHHHHHHHHHHHhcCCEEEEEcCCCCcHHHHHHHHHHhccc----cCCCeEEEEeCch
Q 006122 29 LSSASSIGYGYASIEKQRQRLPVYKYRTAILYLVETHATTIIVGETGSGKTTQIPQYLKEAGW----ADGGRVIACTQPR 104 (660)
Q Consensus 29 ~~~~~~~~~~~~~~~~~~~~lPi~~~~~~i~~~l~~~~~vii~apTGsGKT~~ip~~l~~~~~----~~~~~~i~v~p~r 104 (660)
|++++++...+..+.+... -..+.+|.+++..+.+++++++++|||+|||......+..... ..+.++++++|++
T Consensus 1 ~~~~~~~~~i~~~l~~~~~-~~~~~~Q~~~~~~~~~~~~~li~~~TG~GKT~~~~~~~l~~~~~~~~~~~~~viii~p~~ 79 (203)
T cd00268 1 FEELGLSPELLRGIYALGF-EKPTPIQARAIPPLLSGRDVIGQAQTGSGKTAAFLIPILEKLDPSPKKDGPQALILAPTR 79 (203)
T ss_pred CCcCCCCHHHHHHHHHcCC-CCCCHHHHHHHHHHhcCCcEEEECCCCCcHHHHHHHHHHHHHHhhcccCCceEEEEcCCH
Confidence 6778888888877766433 3367788889999888999999999999999443222222211 2345789999999
Q ss_pred HHHHHHH--HHHHHHHhCCeeeeEEeeeeeccc-cCCCCCceEEEechHHHHHHHhcCCC-CCCCcEEEEeCCCcCCcCh
Q 006122 105 RLAVQAV--ASRVAEEMGVKVGEEVGYTIRFED-FTNKDLTAIKFLTDGVLLREMMDDPL-LTKYSVIMVDEAHERSIST 180 (660)
Q Consensus 105 ~la~~~~--~~~~~~~~~~~~~~~vg~~~~~~~-~~~~~~~~I~v~T~~~ll~~l~~~~~-l~~~~~iIiDE~Her~~~~ 180 (660)
+++.|.. .+.+....+..+....|.....+. .....+.+|+++|++.+.+.+..... +.+++++|+||+|+-. +.
T Consensus 80 ~L~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iiv~T~~~l~~~l~~~~~~~~~l~~lIvDE~h~~~-~~ 158 (203)
T cd00268 80 ELALQIAEVARKLGKHTNLKVVVIYGGTSIDKQIRKLKRGPHIVVATPGRLLDLLERGKLDLSKVKYLVLDEADRML-DM 158 (203)
T ss_pred HHHHHHHHHHHHHhccCCceEEEEECCCCHHHHHHHhcCCCCEEEEChHHHHHHHHcCCCChhhCCEEEEeChHHhh-cc
Confidence 9988743 333444445666666653221111 11112678999999999998866554 8899999999999532 33
Q ss_pred hHHHHHHHHHHHhcCCceEEEeecccc
Q 006122 181 DILLGLLKKIQRCRSDLRLIISSATIE 207 (660)
Q Consensus 181 d~ll~~l~~~~~~~~~~kii~~SAT~~ 207 (660)
.+...+.........+.+++++|||++
T Consensus 159 ~~~~~~~~~~~~l~~~~~~~~~SAT~~ 185 (203)
T cd00268 159 GFEDQIREILKLLPKDRQTLLFSATMP 185 (203)
T ss_pred ChHHHHHHHHHhCCcccEEEEEeccCC
Confidence 333333333334456899999999995
No 114
>KOG0953 consensus Mitochondrial RNA helicase SUV3, DEAD-box superfamily [RNA processing and modification]
Probab=99.70 E-value=3.4e-16 Score=161.57 Aligned_cols=275 Identities=23% Similarity=0.258 Sum_probs=175.4
Q ss_pred CCEEEEEcCCCCcHHHHHHHHHHhccccCCCeEEEEeCchHHHHHHHHHHHHHHhCCeeeeEEeeeeeccccCCCCCceE
Q 006122 65 HATTIIVGETGSGKTTQIPQYLKEAGWADGGRVIACTQPRRLAVQAVASRVAEEMGVKVGEEVGYTIRFEDFTNKDLTAI 144 (660)
Q Consensus 65 ~~~vii~apTGsGKT~~ip~~l~~~~~~~~~~~i~v~p~r~la~~~~~~~~~~~~~~~~~~~vg~~~~~~~~~~~~~~~I 144 (660)
.+++.-+|||.||||+-+-+-+.+. ..-++|-|.|- .|.++.+|+ .+.|+.+...+|...++...... .+..
T Consensus 191 RkIi~H~GPTNSGKTy~ALqrl~~a-----ksGvycGPLrL-LA~EV~~r~-na~gipCdL~TGeE~~~~~~~~~-~a~h 262 (700)
T KOG0953|consen 191 RKIIMHVGPTNSGKTYRALQRLKSA-----KSGVYCGPLRL-LAHEVYDRL-NALGIPCDLLTGEERRFVLDNGN-PAQH 262 (700)
T ss_pred heEEEEeCCCCCchhHHHHHHHhhh-----ccceecchHHH-HHHHHHHHh-hhcCCCccccccceeeecCCCCC-cccc
Confidence 4567779999999997776665554 23488887764 455666664 45688888888866655444333 4666
Q ss_pred EEechHHHHHHHhcCCCCCCCcEEEEeCCC-----cCC-cChhHHHHHHHHHHHhcCCceEEEeecccchHHHHHHhhcC
Q 006122 145 KFLTDGVLLREMMDDPLLTKYSVIMVDEAH-----ERS-ISTDILLGLLKKIQRCRSDLRLIISSATIEAKSMSAFFHAR 218 (660)
Q Consensus 145 ~v~T~~~ll~~l~~~~~l~~~~~iIiDE~H-----er~-~~~d~ll~~l~~~~~~~~~~kii~~SAT~~~~~~~~~~~~~ 218 (660)
+-||-++.- .-..|++.||||++ .|+ .+|..++++...-...+.+. |-+ +.+.+...
T Consensus 263 vScTVEM~s-------v~~~yeVAViDEIQmm~Dp~RGwAWTrALLGl~AdEiHLCGep------svl--dlV~~i~k-- 325 (700)
T KOG0953|consen 263 VSCTVEMVS-------VNTPYEVAVIDEIQMMRDPSRGWAWTRALLGLAADEIHLCGEP------SVL--DLVRKILK-- 325 (700)
T ss_pred eEEEEEEee-------cCCceEEEEehhHHhhcCcccchHHHHHHHhhhhhhhhccCCc------hHH--HHHHHHHh--
Confidence 677776542 23568999999999 344 33455666655544444332 111 11112111
Q ss_pred CCCCCCcccccCCCCCCeEEEECCccccceEEecCCCchhHHHHHHHHHHHHHhcCCCCcEEEEcCCHHHHHHHHHHHHH
Q 006122 219 KGRRGLEGVELVPRLEPAILSVEGRGFNVQIHYVEEPVSDYVQAAVSTVLLIHDKEPPGDILVFLTGQDDIDATIQLLTE 298 (660)
Q Consensus 219 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iLVF~~~~~~i~~l~~~L~~ 298 (660)
..|.. +++++.+.-..-.+. +.++.-..+-.+|+++|=+ ++++|-.+...+.+
T Consensus 326 ---------------------~TGd~--vev~~YeRl~pL~v~---~~~~~sl~nlk~GDCvV~F-Skk~I~~~k~kIE~ 378 (700)
T KOG0953|consen 326 ---------------------MTGDD--VEVREYERLSPLVVE---ETALGSLSNLKPGDCVVAF-SKKDIFTVKKKIEK 378 (700)
T ss_pred ---------------------hcCCe--eEEEeecccCcceeh---hhhhhhhccCCCCCeEEEe-ehhhHHHHHHHHHH
Confidence 11211 122211111000000 1112222334556665543 78889999999987
Q ss_pred HhhhccCCCCCeEEEEccCCCCHHHHhhhcCCCCC--CCcEEEEeCCCcccccCCCCeEEEEeCCCccceeecCCCCccc
Q 006122 299 EARTSKKNSSGLIILPLYSGLSRAEQEQVFSPTPR--GKRKVVISTNIAETSLTLEGIVYVVDSGFSKQRFYNPISDIEN 376 (660)
Q Consensus 299 ~~~~~~~~~~~~~v~~lh~~l~~~~r~~v~~~f~~--g~~~vlvaT~i~e~Gidip~v~~VId~g~~k~~~~~~~~~~~~ 376 (660)
.. ...++.+||+||++.|.+--..|.+ +..+|+|||+..++|+|+. |+-||.+.+.| |+ .
T Consensus 379 ~g--------~~k~aVIYGsLPPeTr~aQA~~FNd~~~e~dvlVAsDAIGMGLNL~-IrRiiF~sl~K---ys------g 440 (700)
T KOG0953|consen 379 AG--------NHKCAVIYGSLPPETRLAQAALFNDPSNECDVLVASDAIGMGLNLN-IRRIIFYSLIK---YS------G 440 (700)
T ss_pred hc--------CcceEEEecCCCCchhHHHHHHhCCCCCccceEEeecccccccccc-eeEEEEeeccc---CC------c
Confidence 72 5569999999999988776666654 8999999999999999997 88888766644 33 2
Q ss_pred ceeeecCHHhHHHhhcccCCC----CCcEEEEccChH
Q 006122 377 LVVAPISKASARQRAGRAGRV----RPGKCYRLYTEE 409 (660)
Q Consensus 377 l~~~~~s~~~~~QR~GRaGR~----~~G~~~~l~~~~ 409 (660)
-.+.+++.+++.|-+|||||. ..|.+-.+..++
T Consensus 441 ~e~~~it~sqikQIAGRAGRf~s~~~~G~vTtl~~eD 477 (700)
T KOG0953|consen 441 RETEDITVSQIKQIAGRAGRFGSKYPQGEVTTLHSED 477 (700)
T ss_pred ccceeccHHHHHHHhhcccccccCCcCceEEEeeHhh
Confidence 345699999999999999998 567777777665
No 115
>PRK12899 secA preprotein translocase subunit SecA; Reviewed
Probab=99.70 E-value=3.1e-15 Score=166.96 Aligned_cols=124 Identities=21% Similarity=0.224 Sum_probs=94.0
Q ss_pred cCCC--cHHHHHHHHHHHhcCCEEEEEcCCCCcHH--HHHHHHHHhccccCCCeEEEEeCchHHHHH--HHHHHHHHHhC
Q 006122 47 QRLP--VYKYRTAILYLVETHATTIIVGETGSGKT--TQIPQYLKEAGWADGGRVIACTQPRRLAVQ--AVASRVAEEMG 120 (660)
Q Consensus 47 ~~lP--i~~~~~~i~~~l~~~~~vii~apTGsGKT--~~ip~~l~~~~~~~~~~~i~v~p~r~la~~--~~~~~~~~~~~ 120 (660)
...| ..+++.+++..+..++.+|..++||+||| +.+|.+.... .+..+++++|++.||.| .+...+.+.+|
T Consensus 87 ~~~p~~~tp~qvQ~I~~i~l~~gvIAeaqTGeGKTLAf~LP~l~~aL---~g~~v~IVTpTrELA~Qdae~m~~L~k~lG 163 (970)
T PRK12899 87 YHQQWDMVPYDVQILGAIAMHKGFITEMQTGEGKTLTAVMPLYLNAL---TGKPVHLVTVNDYLAQRDCEWVGSVLRWLG 163 (970)
T ss_pred ccCCCCCChHHHHHhhhhhcCCCeEEEeCCCCChHHHHHHHHHHHHh---hcCCeEEEeCCHHHHHHHHHHHHHHHhhcC
Confidence 3456 78888899999999999999999999999 6667664332 23347889999999988 66667778888
Q ss_pred CeeeeEEeeeeeccccCCCCCceEEEechHHH-HHHHhcCCC-CC-------CCcEEEEeCCC
Q 006122 121 VKVGEEVGYTIRFEDFTNKDLTAIKFLTDGVL-LREMMDDPL-LT-------KYSVIMVDEAH 174 (660)
Q Consensus 121 ~~~~~~vg~~~~~~~~~~~~~~~I~v~T~~~l-l~~l~~~~~-l~-------~~~~iIiDE~H 174 (660)
.+++..+|.....+..... .++|+|+||+.| ++.+..+.. ++ .+.++|||||+
T Consensus 164 LsV~~i~GG~~~~eq~~~y-~~DIVygTPgRLgfDyLrd~~~~~~~~~~vqr~~~~~IIDEAD 225 (970)
T PRK12899 164 LTTGVLVSGSPLEKRKEIY-QCDVVYGTASEFGFDYLRDNSIATRKEEQVGRGFYFAIIDEVD 225 (970)
T ss_pred CeEEEEeCCCCHHHHHHHc-CCCEEEECCChhHHHHhhCCCCCcCHHHhhcccccEEEEechh
Confidence 8888888744332222223 589999999999 888876533 33 56899999999
No 116
>PF00270 DEAD: DEAD/DEAH box helicase; InterPro: IPR011545 Members of this family include the DEAD and DEAH box helicases. Helicases are involved in unwinding nucleic acids. The DEAD box helicases are involved in various aspects of RNA metabolism, including nuclear transcription, pre mRNA splicing, ribosome biogenesis, nucleocytoplasmic transport, translation, RNA decay and organellar gene expression. ; GO: 0003676 nucleic acid binding, 0005524 ATP binding, 0008026 ATP-dependent helicase activity; PDB: 3RRM_A 3RRN_A 3PEW_A 2KBE_A 3PEY_A 3FHO_A 2ZJA_A 2ZJ8_A 2ZJ5_A 2ZJ2_A ....
Probab=99.67 E-value=3.2e-16 Score=147.68 Aligned_cols=156 Identities=22% Similarity=0.245 Sum_probs=102.9
Q ss_pred HHHHHHHHHHhcCCEEEEEcCCCCcHHHHHHHHHHhcccc-CCCeEEEEeCchHHHHHHHHHHHHHHhC---CeeeeEEe
Q 006122 53 KYRTAILYLVETHATTIIVGETGSGKTTQIPQYLKEAGWA-DGGRVIACTQPRRLAVQAVASRVAEEMG---VKVGEEVG 128 (660)
Q Consensus 53 ~~~~~i~~~l~~~~~vii~apTGsGKT~~ip~~l~~~~~~-~~~~~i~v~p~r~la~~~~~~~~~~~~~---~~~~~~vg 128 (660)
+.|.++++.+.+++++++.||||+|||+.+...+...... ...++++++|.++++.+.. +++..... ..+....|
T Consensus 2 ~~Q~~~~~~i~~~~~~li~aptGsGKT~~~~~~~l~~~~~~~~~~~lii~P~~~l~~q~~-~~~~~~~~~~~~~~~~~~~ 80 (169)
T PF00270_consen 2 PLQQEAIEAIISGKNVLISAPTGSGKTLAYILPALNRLQEGKDARVLIIVPTRALAEQQF-ERLRKFFSNTNVRVVLLHG 80 (169)
T ss_dssp HHHHHHHHHHHTTSEEEEECSTTSSHHHHHHHHHHHHHHTTSSSEEEEEESSHHHHHHHH-HHHHHHTTTTTSSEEEEST
T ss_pred HHHHHHHHHHHcCCCEEEECCCCCccHHHHHHHHHhhhccCCCceEEEEeeccccccccc-ccccccccccccccccccc
Confidence 5788999998899999999999999996666555443322 2347899999998877654 44444443 34444444
Q ss_pred eee-e--ccccCCCCCceEEEechHHHHHHHhcCC-CCCCCcEEEEeCCCcCCcC-h-hHHHHHHHHHHHhcCCceEEEe
Q 006122 129 YTI-R--FEDFTNKDLTAIKFLTDGVLLREMMDDP-LLTKYSVIMVDEAHERSIS-T-DILLGLLKKIQRCRSDLRLIIS 202 (660)
Q Consensus 129 ~~~-~--~~~~~~~~~~~I~v~T~~~ll~~l~~~~-~l~~~~~iIiDE~Her~~~-~-d~ll~~l~~~~~~~~~~kii~~ 202 (660)
... . ....... ..+|+|+||+.+.+.+.... .+.++++||+||+|..... . +.+..+++.+ ...++.++|+|
T Consensus 81 ~~~~~~~~~~~~~~-~~~ilv~T~~~l~~~~~~~~~~~~~~~~iViDE~h~l~~~~~~~~~~~i~~~~-~~~~~~~~i~~ 158 (169)
T PF00270_consen 81 GQSISEDQREVLSN-QADILVTTPEQLLDLISNGKINISRLSLIVIDEAHHLSDETFRAMLKSILRRL-KRFKNIQIILL 158 (169)
T ss_dssp TSCHHHHHHHHHHT-TSSEEEEEHHHHHHHHHTTSSTGTTESEEEEETHHHHHHTTHHHHHHHHHHHS-HTTTTSEEEEE
T ss_pred cccccccccccccc-cccccccCcchhhccccccccccccceeeccCcccccccccHHHHHHHHHHHh-cCCCCCcEEEE
Confidence 221 1 1111122 68999999999999987643 3566999999999964442 1 1222222222 22346899999
Q ss_pred ecccchHHHH
Q 006122 203 SATIEAKSMS 212 (660)
Q Consensus 203 SAT~~~~~~~ 212 (660)
|||++ ..+.
T Consensus 159 SAT~~-~~~~ 167 (169)
T PF00270_consen 159 SATLP-SNVE 167 (169)
T ss_dssp ESSST-HHHH
T ss_pred eeCCC-hhHh
Confidence 99997 5544
No 117
>TIGR00348 hsdR type I site-specific deoxyribonuclease, HsdR family. Members of this family are assumed to differ from each other in DNA site specificity.
Probab=99.66 E-value=9e-15 Score=165.57 Aligned_cols=310 Identities=15% Similarity=0.115 Sum_probs=164.1
Q ss_pred cCCCcHHHHHHH---HHHHhc------CCEEEEEcCCCCcHHHHHHHHHHhc-cccCCCeEEEEeCchHHHHHHHHHHHH
Q 006122 47 QRLPVYKYRTAI---LYLVET------HATTIIVGETGSGKTTQIPQYLKEA-GWADGGRVIACTQPRRLAVQAVASRVA 116 (660)
Q Consensus 47 ~~lPi~~~~~~i---~~~l~~------~~~vii~apTGsGKT~~ip~~l~~~-~~~~~~~~i~v~p~r~la~~~~~~~~~ 116 (660)
+..|.+.|...+ ++.+.. .+..+|..+||||||..+..++... ......+++++++.+.|..|... .+.
T Consensus 236 k~~~r~~Q~~av~~~~~~~~~~~~~~~~~~gli~~~TGsGKT~t~~~la~~l~~~~~~~~vl~lvdR~~L~~Q~~~-~f~ 314 (667)
T TIGR00348 236 KPYQRYMQYRAVKKIVESITRKTWGKDERGGLIWHTQGSGKTLTMLFAARKALELLKNPKVFFVVDRRELDYQLMK-EFQ 314 (667)
T ss_pred eeehHHHHHHHHHHHHHHHHhcccCCCCceeEEEEecCCCccHHHHHHHHHHHhhcCCCeEEEEECcHHHHHHHHH-HHH
Confidence 345666555443 333433 3578999999999994443333221 12234567888888888776543 333
Q ss_pred HHhCCeeeeEEeeeeeccccCCCCCceEEEechHHHHHHHhcC--CC-CCCC-cEEEEeCCCcCCcChhHHHHHHHHHHH
Q 006122 117 EEMGVKVGEEVGYTIRFEDFTNKDLTAIKFLTDGVLLREMMDD--PL-LTKY-SVIMVDEAHERSISTDILLGLLKKIQR 192 (660)
Q Consensus 117 ~~~~~~~~~~vg~~~~~~~~~~~~~~~I~v~T~~~ll~~l~~~--~~-l~~~-~~iIiDE~Her~~~~d~ll~~l~~~~~ 192 (660)
......+ ...+...............|+|+|.+.+.+.+... .. .... .+||+|||| |+....+. +.+..
T Consensus 315 ~~~~~~~-~~~~s~~~L~~~l~~~~~~iivtTiQk~~~~~~~~~~~~~~~~~~~lvIvDEaH-rs~~~~~~----~~l~~ 388 (667)
T TIGR00348 315 SLQKDCA-ERIESIAELKRLLEKDDGGIIITTIQKFDKKLKEEEEKFPVDRKEVVVIFDEAH-RSQYGELA----KNLKK 388 (667)
T ss_pred hhCCCCC-cccCCHHHHHHHHhCCCCCEEEEEhHHhhhhHhhhhhccCCCCCCEEEEEEcCc-cccchHHH----HHHHh
Confidence 3221111 01111000111111224789999999998643221 11 1111 389999999 77654322 23333
Q ss_pred hcCCceEEEeecccch----HHHHHHhhc----CCCCCCCcccccCCCCCCeEEEECCccccceEEecCCC---------
Q 006122 193 CRSDLRLIISSATIEA----KSMSAFFHA----RKGRRGLEGVELVPRLEPAILSVEGRGFNVQIHYVEEP--------- 255 (660)
Q Consensus 193 ~~~~~kii~~SAT~~~----~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~--------- 255 (660)
..++...+++|||+-. ..+ ..|+. .-...+.... .. +|-..| +.|....
T Consensus 389 ~~p~a~~lGfTaTP~~~~d~~t~-~~f~~~fg~~i~~Y~~~~A-I~----------dG~~~~--i~Y~~~~~~~~~~~~~ 454 (667)
T TIGR00348 389 ALKNASFFGFTGTPIFKKDRDTS-LTFAYVFGRYLHRYFITDA-IR----------DGLTVK--IDYEDRLPEDHLDRKK 454 (667)
T ss_pred hCCCCcEEEEeCCCccccccccc-ccccCCCCCeEEEeeHHHH-hh----------cCCeee--EEEEecchhhccChHH
Confidence 4577899999999921 212 22221 0000000000 00 111111 1111000
Q ss_pred -------------c--h---------------------hHHHHHHHHHHHH-Hh--cCCCCcEEEEcCCHHHHHHHHHHH
Q 006122 256 -------------V--S---------------------DYVQAAVSTVLLI-HD--KEPPGDILVFLTGQDDIDATIQLL 296 (660)
Q Consensus 256 -------------~--~---------------------~~~~~~~~~~~~~-~~--~~~~~~iLVF~~~~~~i~~l~~~L 296 (660)
. . +.+......+... .. ...+++.+|||.++.++..+++.|
T Consensus 455 l~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~ia~~i~~h~~~~~~~~~~kamvv~~sr~~a~~~~~~l 534 (667)
T TIGR00348 455 LDAFFDEIFELLPERIREITKESLKEKLQKTKKILFNEDRLESIAKDIAEHYAKFKELFKFKAMVVAISRYACVEEKNAL 534 (667)
T ss_pred HHHHHHHHHHhhhccccHHHHHHHHHHHHHHHhhhcChHHHHHHHHHHHHHHHHhhhcccCceeEEEecHHHHHHHHHHH
Confidence 0 0 0011111112211 11 123588999999999999999988
Q ss_pred HHHhhhccCCCCCeEEEEccCCCCHH---------------------HHhhhcCCCCC-CCcEEEEeCCCcccccCCCCe
Q 006122 297 TEEARTSKKNSSGLIILPLYSGLSRA---------------------EQEQVFSPTPR-GKRKVVISTNIAETSLTLEGI 354 (660)
Q Consensus 297 ~~~~~~~~~~~~~~~v~~lh~~l~~~---------------------~r~~v~~~f~~-g~~~vlvaT~i~e~Gidip~v 354 (660)
.+...... +.....++++-..+ ....+.+.|++ +..+|+|.++.+.+|+|.|.+
T Consensus 535 ~~~~~~~~----~~~~vv~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Fk~~~~~~ilIVvdmllTGFDaP~l 610 (667)
T TIGR00348 535 DEELNEKF----EASAIVMTGKESDDAEIRDYNKHIRTKFDKSDGFEIYYKDLERFKKEENPKLLIVVDMLLTGFDAPIL 610 (667)
T ss_pred Hhhccccc----CCeeEEecCCccchhHHHHHHHHhccccccchhhhHHHHHHHHhcCCCCceEEEEEcccccccCCCcc
Confidence 77643210 12334444432221 12356667754 688999999999999999999
Q ss_pred EEEEeCCCccceeecCCCCcccceeeecCHHhHHHhhcccCCC-CCc
Q 006122 355 VYVVDSGFSKQRFYNPISDIENLVVAPISKASARQRAGRAGRV-RPG 400 (660)
Q Consensus 355 ~~VId~g~~k~~~~~~~~~~~~l~~~~~s~~~~~QR~GRaGR~-~~G 400 (660)
.+++- | .|+....++|.+||+-|. .+|
T Consensus 611 ~tLyl---------d----------Kplk~h~LlQai~R~nR~~~~~ 638 (667)
T TIGR00348 611 NTLYL---------D----------KPLKYHGLLQAIARTNRIDGKD 638 (667)
T ss_pred ceEEE---------e----------ccccccHHHHHHHHhccccCCC
Confidence 88762 1 255555678999999995 444
No 118
>KOG4150 consensus Predicted ATP-dependent RNA helicase [RNA processing and modification]
Probab=99.63 E-value=1.3e-15 Score=156.97 Aligned_cols=318 Identities=12% Similarity=0.066 Sum_probs=198.9
Q ss_pred CCcHHHHHHHHHHHhcCCEEEEEcCCCCcHHHHHHHHHHhc--cccCCCeEEEEeCchHHHHHHHHHH-----HHHHhCC
Q 006122 49 LPVYKYRTAILYLVETHATTIIVGETGSGKTTQIPQYLKEA--GWADGGRVIACTQPRRLAVQAVASR-----VAEEMGV 121 (660)
Q Consensus 49 lPi~~~~~~i~~~l~~~~~vii~apTGsGKT~~ip~~l~~~--~~~~~~~~i~v~p~r~la~~~~~~~-----~~~~~~~ 121 (660)
---+++|-+++..+.+++++++.-.|.+||++ +|+..... ...+....++..|+.+++..+-... +-.++..
T Consensus 285 E~~~~~~~~~~~~~~~G~~~~~~~~~~~GK~~-~~~~~s~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~V~~~~I~~~K~ 363 (1034)
T KOG4150|consen 285 ESGIAISLELLKFASEGRADGGNEARQAGKGT-CPTSGSRKFQTLCHATNSLLPSEMVEHLRNGSKGQVVHVEVIKARKS 363 (1034)
T ss_pred cchhhhhHHHHhhhhhcccccccchhhcCCcc-CcccchhhhhhcCcccceecchhHHHHhhccCCceEEEEEehhhhhc
Confidence 35778889999999999999999999999993 22221111 1112334577777776654311000 0011111
Q ss_pred -eeeeEEeeeeeccccCCCCCceEEEechHHHHHHHhcCC-----CCCCCcEEEEeCCCcCC-cChhHHHHHHHHHHH--
Q 006122 122 -KVGEEVGYTIRFEDFTNKDLTAIKFLTDGVLLREMMDDP-----LLTKYSVIMVDEAHERS-ISTDILLGLLKKIQR-- 192 (660)
Q Consensus 122 -~~~~~vg~~~~~~~~~~~~~~~I~v~T~~~ll~~l~~~~-----~l~~~~~iIiDE~Her~-~~~d~ll~~l~~~~~-- 192 (660)
.+....|.....++.....+.+++|..|.+.......+. .+-...++++||+|-.. +........++.+..
T Consensus 364 A~V~~~D~~sE~~~~A~~R~~~~~~~s~~~~~~s~~L~~~~~~~~~~~~~~~~~~~~~~~Y~~~~~~~~~~~~R~L~~L~ 443 (1034)
T KOG4150|consen 364 AYVEMSDKLSETTKSALKRIGLNTLYSHQAEAISAALAKSLCYNVPVFEELCKDTNSCALYLFPTKALAQDQLRALSDLI 443 (1034)
T ss_pred ceeecccCCCchhHHHHHhcCcceeecCHHHHHHHHhhhccccccHHHHHHHhcccceeeeecchhhHHHHHHHHHHHHH
Confidence 111111111111111111267899999988776554332 13445789999999433 222222333333332
Q ss_pred ----hcCCceEEEeeccc--chHHHHHHhhcCCCCCCCcccccCCCCCCeEEEECCccccceEEecCCCc---------h
Q 006122 193 ----CRSDLRLIISSATI--EAKSMSAFFHARKGRRGLEGVELVPRLEPAILSVEGRGFNVQIHYVEEPV---------S 257 (660)
Q Consensus 193 ----~~~~~kii~~SAT~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~---------~ 257 (660)
...+++++-.|||. ......+.++-.. ...+.+.|.+..-+...+..|. .
T Consensus 444 ~~F~~~~~~~~~~~~~~~K~~~~~~~~~~~~~E---------------~~Li~~DGSPs~~K~~V~WNP~~~P~~~~~~~ 508 (1034)
T KOG4150|consen 444 KGFEASINMGVYDGDTPYKDRTRLRSELANLSE---------------LELVTIDGSPSSEKLFVLWNPSAPPTSKSEKS 508 (1034)
T ss_pred HHHHhhcCcceEeCCCCcCCHHHHHHHhcCCcc---------------eEEEEecCCCCccceEEEeCCCCCCcchhhhh
Confidence 34679999999999 4444556665433 2266777766554443333221 1
Q ss_pred hHHHHHHHHHHHHHhcCCCCcEEEEcCCHHHHHHHHHHHHHHhhhccCCCCCeEEEEccCCCCHHHHhhhcCCCCCCCcE
Q 006122 258 DYVQAAVSTVLLIHDKEPPGDILVFLTGQDDIDATIQLLTEEARTSKKNSSGLIILPLYSGLSRAEQEQVFSPTPRGKRK 337 (660)
Q Consensus 258 ~~~~~~~~~~~~~~~~~~~~~iLVF~~~~~~i~~l~~~L~~~~~~~~~~~~~~~v~~lh~~l~~~~r~~v~~~f~~g~~~ 337 (660)
+.+......+..+.. .+-.++.||++++-++.+....++.+.+...+ .--.|..+.||-..++|++++...-.|+..
T Consensus 509 ~~i~E~s~~~~~~i~--~~~R~IAFC~~R~~CEL~~~~~R~I~~ET~~~-LV~~i~SYRGGY~A~DRRKIE~~~F~G~L~ 585 (1034)
T KOG4150|consen 509 SKVVEVSHLFAEMVQ--HGLRCIAFCPSRKLCELVLCLTREILAETAPH-LVEAITSYRGGYIAEDRRKIESDLFGGKLC 585 (1034)
T ss_pred hHHHHHHHHHHHHHH--cCCcEEEeccHHHHHHHHHHHHHHHHHHhhHH-HHHHHHhhcCccchhhHHHHHHHhhCCeee
Confidence 222222333333333 34459999999999988877766654322210 012356788999999999999988899999
Q ss_pred EEEeCCCcccccCCCCeEEEEeCCCccceeecCCCCcccceeeecCHHhHHHhhcccCCC-CCcEEE
Q 006122 338 VVISTNIAETSLTLEGIVYVVDSGFSKQRFYNPISDIENLVVAPISKASARQRAGRAGRV-RPGKCY 403 (660)
Q Consensus 338 vlvaT~i~e~Gidip~v~~VId~g~~k~~~~~~~~~~~~l~~~~~s~~~~~QR~GRaGR~-~~G~~~ 403 (660)
-|+|||.+|.||||.+.+.|+..|+ |.|.++++|..|||||. ++....
T Consensus 586 giIaTNALELGIDIG~LDAVl~~GF------------------P~S~aNl~QQ~GRAGRRNk~SLav 634 (1034)
T KOG4150|consen 586 GIIATNALELGIDIGHLDAVLHLGF------------------PGSIANLWQQAGRAGRRNKPSLAV 634 (1034)
T ss_pred EEEecchhhhccccccceeEEEccC------------------chhHHHHHHHhccccccCCCceEE
Confidence 9999999999999999999999999 99999999999999998 665443
No 119
>COG0556 UvrB Helicase subunit of the DNA excision repair complex [DNA replication, recombination, and repair]
Probab=99.63 E-value=5.9e-14 Score=144.96 Aligned_cols=169 Identities=20% Similarity=0.141 Sum_probs=121.3
Q ss_pred CceEEEeecccchHHHHHHhhcCCCCCCCcccccCCCCCCeEEEECCcccc-ceEEecCCCchhHHHHHHHHHHHHHhcC
Q 006122 196 DLRLIISSATIEAKSMSAFFHARKGRRGLEGVELVPRLEPAILSVEGRGFN-VQIHYVEEPVSDYVQAAVSTVLLIHDKE 274 (660)
Q Consensus 196 ~~kii~~SAT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-v~~~~~~~~~~~~~~~~~~~~~~~~~~~ 274 (660)
..|+|.+|||+....+..-=+.- .-.++...|-.-| +++........|.+.. +.... .
T Consensus 386 ~~q~i~VSATPg~~E~e~s~~~v---------------veQiIRPTGLlDP~ievRp~~~QvdDL~~E----I~~r~--~ 444 (663)
T COG0556 386 IPQTIYVSATPGDYELEQSGGNV---------------VEQIIRPTGLLDPEIEVRPTKGQVDDLLSE----IRKRV--A 444 (663)
T ss_pred cCCEEEEECCCChHHHHhccCce---------------eEEeecCCCCCCCceeeecCCCcHHHHHHH----HHHHH--h
Confidence 35899999999555444311110 0013333333222 2333333333444433 33322 3
Q ss_pred CCCcEEEEcCCHHHHHHHHHHHHHHhhhccCCCCCeEEEEccCCCCHHHHhhhcCCCCCCCcEEEEeCCCcccccCCCCe
Q 006122 275 PPGDILVFLTGQDDIDATIQLLTEEARTSKKNSSGLIILPLYSGLSRAEQEQVFSPTPRGKRKVVISTNIAETSLTLEGI 354 (660)
Q Consensus 275 ~~~~iLVF~~~~~~i~~l~~~L~~~~~~~~~~~~~~~v~~lh~~l~~~~r~~v~~~f~~g~~~vlvaT~i~e~Gidip~v 354 (660)
.+..+||-+-|++.+|.+.++|.+. ++.+.++||++..-+|.++++..+.|..+|||.-|.+-.|+|+|.|
T Consensus 445 ~~eRvLVTtLTKkmAEdLT~Yl~e~---------gikv~YlHSdidTlER~eIirdLR~G~~DvLVGINLLREGLDiPEV 515 (663)
T COG0556 445 KNERVLVTTLTKKMAEDLTEYLKEL---------GIKVRYLHSDIDTLERVEIIRDLRLGEFDVLVGINLLREGLDLPEV 515 (663)
T ss_pred cCCeEEEEeehHHHHHHHHHHHHhc---------CceEEeeeccchHHHHHHHHHHHhcCCccEEEeehhhhccCCCcce
Confidence 4467999999999999999999887 9999999999999999999999999999999999999999999999
Q ss_pred EEEEeCCCccceeecCCCCcccceeeecCHHhHHHhhcccCCCCCcEEEEccC
Q 006122 355 VYVVDSGFSKQRFYNPISDIENLVVAPISKASARQRAGRAGRVRPGKCYRLYT 407 (660)
Q Consensus 355 ~~VId~g~~k~~~~~~~~~~~~l~~~~~s~~~~~QR~GRaGR~~~G~~~~l~~ 407 (660)
..|.-.+-.|.-. .-|..+.+|-+|||.|.-.|+++...+
T Consensus 516 sLVAIlDADKeGF-------------LRse~SLIQtIGRAARN~~GkvIlYAD 555 (663)
T COG0556 516 SLVAILDADKEGF-------------LRSERSLIQTIGRAARNVNGKVILYAD 555 (663)
T ss_pred eEEEEeecCcccc-------------ccccchHHHHHHHHhhccCCeEEEEch
Confidence 9987544333222 346667889999999999999876544
No 120
>smart00847 HA2 Helicase associated domain (HA2) Add an annotation. This presumed domain is about 90 amino acid residues in length. It is found is a diverse set of RNA helicases. Its function is unknown, however it seems likely to be involved in nucleic acid binding.
Probab=99.62 E-value=8.7e-16 Score=128.76 Aligned_cols=90 Identities=50% Similarity=0.847 Sum_probs=80.8
Q ss_pred HHHHHHHHCCCCCCCCCcchHHHHHhccCCCChhhhHHHHhhccc-CchhHHHHHHhhcccCcccccCcchHHHHHHHHH
Q 006122 459 RALEVLYSLGVLDDDAKLTSPTGFQVAEIPLEPMISKMILSSNEL-GCSEEIITISAVLSIQSIWVSGRGAQKELDEAKL 537 (660)
Q Consensus 459 ~al~~L~~lgald~~~~lT~~lG~~~~~lpl~p~~~~~l~~~~~~-~c~~~~~~i~a~ls~~~~f~~~~~~~~~~~~~~~ 537 (660)
+|++.|+.+||||++|++| ++|+.|++||++|++||||+.+..+ +|.+++++|+|++++.++|..+ ....+.+..+.
T Consensus 1 ~A~~~L~~LgAld~~~~lT-~lG~~m~~lPl~Prla~~Ll~a~~~~~c~~~~~~i~a~ls~~~~~~~~-~~~~~~~~~~~ 78 (92)
T smart00847 1 AALELLYELGALDDDGRLT-PLGRKMAELPLDPRLAKMLLAAAELFGCLDEILTIAAMLSVGDPFPRP-EKRAEADAARR 78 (92)
T ss_pred CHHHHHHHCCCcCCCCCcC-HHHHHHHHCCCChHHHHHHHHHHhhcCcHHHHHHHHHHhcCCCCcCCc-hHHHHHHHHHH
Confidence 3789999999999999999 7999999999999999999999999 8999999999999999988776 45566677788
Q ss_pred hhcCC-CCcHHHHH
Q 006122 538 RFAAA-EGDHVTFL 550 (660)
Q Consensus 538 ~~~~~-~~D~~~~l 550 (660)
.|... .|||++++
T Consensus 79 ~~~~~~~~D~~~~l 92 (92)
T smart00847 79 RFASGRESDHLTLL 92 (92)
T ss_pred HccCCCCCChhhhC
Confidence 88888 79999864
No 121
>TIGR01407 dinG_rel DnaQ family exonuclease/DinG family helicase, putative. This model represents a family of proteins in Gram-positive bacteria. The N-terminal region of about 200 amino acids resembles the epsilon subunit of E. coli DNA polymerase III and the homologous region of the Gram-positive type DNA polymerase III alpha subunit. The epsilon subunit contains an exonuclease domain. The remainder of this protein family resembles a predicted ATP-dependent helicase, the DNA damage-inducible protein DinG of E. coli.
Probab=99.62 E-value=1.6e-13 Score=160.33 Aligned_cols=139 Identities=19% Similarity=0.264 Sum_probs=92.2
Q ss_pred hhHHHHHHHHHHHHHhcCCCCcEEEEcCCHHHHHHHHHHHHHHhhhccCCCCCeEEEEccCCCCHHHHhhhcCCCCCCCc
Q 006122 257 SDYVQAAVSTVLLIHDKEPPGDILVFLTGQDDIDATIQLLTEEARTSKKNSSGLIILPLYSGLSRAEQEQVFSPTPRGKR 336 (660)
Q Consensus 257 ~~~~~~~~~~~~~~~~~~~~~~iLVF~~~~~~i~~l~~~L~~~~~~~~~~~~~~~v~~lh~~l~~~~r~~v~~~f~~g~~ 336 (660)
.++.+.....+..+... .+|++|||+++.+..+.++..|..... ..++.+.. .+.. ..|.++++.|++|+.
T Consensus 656 ~~~~~~ia~~i~~l~~~-~~g~~LVlftS~~~l~~v~~~L~~~~~-----~~~~~~l~--q~~~-~~r~~ll~~F~~~~~ 726 (850)
T TIGR01407 656 EEYAQEIASYIIEITAI-TSPKILVLFTSYEMLHMVYDMLNELPE-----FEGYEVLA--QGIN-GSRAKIKKRFNNGEK 726 (850)
T ss_pred HHHHHHHHHHHHHHHHh-cCCCEEEEeCCHHHHHHHHHHHhhhcc-----ccCceEEe--cCCC-ccHHHHHHHHHhCCC
Confidence 45666666666666554 457899999999999999999875321 01233332 2222 467888999999999
Q ss_pred EEEEeCCCcccccCCCCeE--EEEeCCCccceeecC-----------C--CCcccceeeecCHHhHHHhhcccCCC--CC
Q 006122 337 KVVISTNIAETSLTLEGIV--YVVDSGFSKQRFYNP-----------I--SDIENLVVAPISKASARQRAGRAGRV--RP 399 (660)
Q Consensus 337 ~vlvaT~i~e~Gidip~v~--~VId~g~~k~~~~~~-----------~--~~~~~l~~~~~s~~~~~QR~GRaGR~--~~ 399 (660)
.|+++|+.+.+|||+|+.. .||-.++.-..--|| . .....+ ..|.....+.|-+||.=|. ..
T Consensus 727 ~iLlgt~sf~EGVD~~g~~l~~viI~~LPf~~p~dp~~~a~~~~~~~~g~~~f~~~-~lP~A~~~l~Qa~GRlIRs~~D~ 805 (850)
T TIGR01407 727 AILLGTSSFWEGVDFPGNGLVCLVIPRLPFANPKHPLTKKYWQKLEQEGKNPFYDY-VLPMAIIRLRQALGRLIRRENDR 805 (850)
T ss_pred eEEEEcceeecccccCCCceEEEEEeCCCCCCCCCHHHHHHHHHHHHhcCCchHHh-hHHHHHHHHHHhhccccccCCce
Confidence 9999999999999999865 566666643211111 0 011111 1145567789999999998 45
Q ss_pred cEEEEc
Q 006122 400 GKCYRL 405 (660)
Q Consensus 400 G~~~~l 405 (660)
|..+.+
T Consensus 806 G~v~il 811 (850)
T TIGR01407 806 GSIVIL 811 (850)
T ss_pred EEEEEE
Confidence 655544
No 122
>PRK12900 secA preprotein translocase subunit SecA; Reviewed
Probab=99.61 E-value=2.2e-14 Score=160.59 Aligned_cols=107 Identities=22% Similarity=0.243 Sum_probs=92.1
Q ss_pred CCCcEEEEcCCHHHHHHHHHHHHHHhhhccCCCCCeEEEEccCCCCHHHHhhhcCCCCCCCcEEEEeCCCcccccCCC--
Q 006122 275 PPGDILVFLTGQDDIDATIQLLTEEARTSKKNSSGLIILPLYSGLSRAEQEQVFSPTPRGKRKVVISTNIAETSLTLE-- 352 (660)
Q Consensus 275 ~~~~iLVF~~~~~~i~~l~~~L~~~~~~~~~~~~~~~v~~lh~~l~~~~r~~v~~~f~~g~~~vlvaT~i~e~Gidip-- 352 (660)
.+.++||||+|++.++.+++.|.+. ++....+|+ .+.+|...+..|..+...|+||||+|++|+||+
T Consensus 597 ~grpVLIft~Sve~sE~Ls~~L~~~---------gI~h~vLna--kq~~REa~Iia~AG~~g~VtIATNMAGRGtDIkl~ 665 (1025)
T PRK12900 597 KGQPVLVGTASVEVSETLSRMLRAK---------RIAHNVLNA--KQHDREAEIVAEAGQKGAVTIATNMAGRGTDIKLG 665 (1025)
T ss_pred CCCCEEEEeCcHHHHHHHHHHHHHc---------CCCceeecC--CHHHhHHHHHHhcCCCCeEEEeccCcCCCCCcCCc
Confidence 5678999999999999999999886 777888997 477888888899999999999999999999999
Q ss_pred -CeEE-----EEeCCCccceeecCCCCcccceeeecCHHhHHHhhcccCCC-CCcEEEEccChHH
Q 006122 353 -GIVY-----VVDSGFSKQRFYNPISDIENLVVAPISKASARQRAGRAGRV-RPGKCYRLYTEEY 410 (660)
Q Consensus 353 -~v~~-----VId~g~~k~~~~~~~~~~~~l~~~~~s~~~~~QR~GRaGR~-~~G~~~~l~~~~~ 410 (660)
+|.. ||.+.. |-|...+.||.||+||. .||.+..+++.++
T Consensus 666 ~~V~~vGGL~VIgter------------------hes~Rid~Ql~GRtGRqGdpGsS~ffvSleD 712 (1025)
T PRK12900 666 EGVRELGGLFILGSER------------------HESRRIDRQLRGRAGRQGDPGESVFYVSLED 712 (1025)
T ss_pred cchhhhCCceeeCCCC------------------CchHHHHHHHhhhhhcCCCCcceEEEechhH
Confidence 4533 365444 77888899999999999 8999999988654
No 123
>COG1110 Reverse gyrase [DNA replication, recombination, and repair]
Probab=99.60 E-value=2.7e-13 Score=149.73 Aligned_cols=277 Identities=21% Similarity=0.205 Sum_probs=178.0
Q ss_pred hcCCCcHHHHHHHHHHHhcCCEEEEEcCCCCcHHHHHHHHHHhccccCCCeEEEEeCchHHHHHHHHHHHHH---HhCCe
Q 006122 46 RQRLPVYKYRTAILYLVETHATTIIVGETGSGKTTQIPQYLKEAGWADGGRVIACTQPRRLAVQAVASRVAE---EMGVK 122 (660)
Q Consensus 46 ~~~lPi~~~~~~i~~~l~~~~~vii~apTGsGKT~~ip~~l~~~~~~~~~~~i~v~p~r~la~~~~~~~~~~---~~~~~ 122 (660)
....+.+..|+.-...+..|+..-|.||||.||||....+.+..+. .+.++.+++||+-|+.| +.+++.+ ..+ .
T Consensus 78 ~~G~~~ws~QR~WakR~~rg~SFaiiAPTGvGKTTfg~~~sl~~a~-kgkr~yii~PT~~Lv~Q-~~~kl~~~~e~~~-~ 154 (1187)
T COG1110 78 ATGFRPWSAQRVWAKRLVRGKSFAIIAPTGVGKTTFGLLMSLYLAK-KGKRVYIIVPTTTLVRQ-VYERLKKFAEDAG-S 154 (1187)
T ss_pred hhCCCchHHHHHHHHHHHcCCceEEEcCCCCchhHHHHHHHHHHHh-cCCeEEEEecCHHHHHH-HHHHHHHHHhhcC-C
Confidence 3445888999999999999999999999999999665544433322 45678889999887776 4444443 233 2
Q ss_pred eeeEEeeeeecccc--------CCCCCceEEEechHHHHHHHhcCCCCCCCcEEEEeCCC---cCCcChhHHHHHHH---
Q 006122 123 VGEEVGYTIRFEDF--------TNKDLTAIKFLTDGVLLREMMDDPLLTKYSVIMVDEAH---ERSISTDILLGLLK--- 188 (660)
Q Consensus 123 ~~~~vg~~~~~~~~--------~~~~~~~I~v~T~~~ll~~l~~~~~l~~~~~iIiDE~H---er~~~~d~ll~~l~--- 188 (660)
....+.|+.....+ ...++.+|+++|.+.|.+.+..-.. -++++|++|.++ ..+-+.|-++.++-
T Consensus 155 ~~~~~~yh~~l~~~ekee~le~i~~gdfdIlitTs~FL~k~~e~L~~-~kFdfifVDDVDA~LkaskNvDriL~LlGf~e 233 (1187)
T COG1110 155 LDVLVVYHSALPTKEKEEALERIESGDFDILITTSQFLSKRFEELSK-LKFDFIFVDDVDAILKASKNVDRLLRLLGFSE 233 (1187)
T ss_pred cceeeeeccccchHHHHHHHHHHhcCCccEEEEeHHHHHhhHHHhcc-cCCCEEEEccHHHHHhccccHHHHHHHcCCCH
Confidence 22223254432221 1223789999999988776543111 378999999999 22233333322211
Q ss_pred -------------H-H---------------------HHhcCCceEEEeecccch-----HHHHHHhhcCCCCCCCcccc
Q 006122 189 -------------K-I---------------------QRCRSDLRLIISSATIEA-----KSMSAFFHARKGRRGLEGVE 228 (660)
Q Consensus 189 -------------~-~---------------------~~~~~~~kii~~SAT~~~-----~~~~~~~~~~~~~~~~~~~~ 228 (660)
. + .+..+.-.+|++|||..+ ..|.+.++=....
T Consensus 234 E~i~~a~~~~~lr~~~~~~~~~~~~~e~~~~~e~~~~~~r~k~g~LvvsSATg~~rg~R~~LfReLlgFevG~------- 306 (1187)
T COG1110 234 EVIESAYELIKLRRKLYGEKRAERVREELREVEREREKKRRKLGILVVSSATGKPRGSRLKLFRELLGFEVGS------- 306 (1187)
T ss_pred HHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHhccCCceEEEeeccCCCCCchHHHHHHHhCCccCc-------
Confidence 0 0 012244678999999833 2344544432210
Q ss_pred cCCCCCCeEEEECCccccceEEecCCCchhHHHHHHHHHHHHHhcCCCCcEEEEcCC---HHHHHHHHHHHHHHhhhccC
Q 006122 229 LVPRLEPAILSVEGRGFNVQIHYVEEPVSDYVQAAVSTVLLIHDKEPPGDILVFLTG---QDDIDATIQLLTEEARTSKK 305 (660)
Q Consensus 229 ~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iLVF~~~---~~~i~~l~~~L~~~~~~~~~ 305 (660)
......++...|.... .. ..+..+.+.-. ...|||+|. ++.++++++.|.+.
T Consensus 307 -----------~~~~LRNIvD~y~~~~---~~----e~~~elvk~lG-~GgLIfV~~d~G~e~aeel~e~Lr~~------ 361 (1187)
T COG1110 307 -----------GGEGLRNIVDIYVESE---SL----EKVVELVKKLG-DGGLIFVPIDYGREKAEELAEYLRSH------ 361 (1187)
T ss_pred -----------cchhhhheeeeeccCc---cH----HHHHHHHHHhC-CCeEEEEEcHHhHHHHHHHHHHHHhc------
Confidence 0111234444444442 22 22222223222 348999999 88999999999876
Q ss_pred CCCCeEEEEccCCCCHHHHhhhcCCCCCCCcEEEEeC----CCcccccCCC-CeEEEEeCCCccce
Q 006122 306 NSSGLIILPLYSGLSRAEQEQVFSPTPRGKRKVVIST----NIAETSLTLE-GIVYVVDSGFSKQR 366 (660)
Q Consensus 306 ~~~~~~v~~lh~~l~~~~r~~v~~~f~~g~~~vlvaT----~i~e~Gidip-~v~~VId~g~~k~~ 366 (660)
++.+..+|++ ..+.++.|..|+.+++|.. +++-+|+|+| -++|+|.+|..|.+
T Consensus 362 ---Gi~a~~~~a~-----~~~~le~F~~GeidvLVGvAsyYG~lVRGlDLP~rirYaIF~GvPk~r 419 (1187)
T COG1110 362 ---GINAELIHAE-----KEEALEDFEEGEVDVLVGVASYYGVLVRGLDLPHRIRYAVFYGVPKFR 419 (1187)
T ss_pred ---CceEEEeecc-----chhhhhhhccCceeEEEEecccccceeecCCchhheeEEEEecCCcee
Confidence 8999999985 3677899999999999987 4789999999 58899999998644
No 124
>TIGR00631 uvrb excinuclease ABC, B subunit. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University)
Probab=99.59 E-value=1.1e-14 Score=162.84 Aligned_cols=114 Identities=20% Similarity=0.143 Sum_probs=100.0
Q ss_pred CCCCcEEEEcCCHHHHHHHHHHHHHHhhhccCCCCCeEEEEccCCCCHHHHhhhcCCCCCCCcEEEEeCCCcccccCCCC
Q 006122 274 EPPGDILVFLTGQDDIDATIQLLTEEARTSKKNSSGLIILPLYSGLSRAEQEQVFSPTPRGKRKVVISTNIAETSLTLEG 353 (660)
Q Consensus 274 ~~~~~iLVF~~~~~~i~~l~~~L~~~~~~~~~~~~~~~v~~lh~~l~~~~r~~v~~~f~~g~~~vlvaT~i~e~Gidip~ 353 (660)
..+.++||||++++.++.+++.|.+. ++.+..+||+++..+|.++++.|++|...|+|||+++++|+|+|+
T Consensus 440 ~~g~~vLIf~~tk~~ae~L~~~L~~~---------gi~~~~lh~~~~~~eR~~~l~~fr~G~i~VLV~t~~L~rGfDiP~ 510 (655)
T TIGR00631 440 ARNERVLVTTLTKKMAEDLTDYLKEL---------GIKVRYLHSEIDTLERVEIIRDLRLGEFDVLVGINLLREGLDLPE 510 (655)
T ss_pred cCCCEEEEEECCHHHHHHHHHHHhhh---------ccceeeeeCCCCHHHHHHHHHHHhcCCceEEEEcChhcCCeeeCC
Confidence 34677999999999999999999876 788999999999999999999999999999999999999999999
Q ss_pred eEEEEeCCCccceeecCCCCcccceeeecCHHhHHHhhcccCCCCCcEEEEccChH
Q 006122 354 IVYVVDSGFSKQRFYNPISDIENLVVAPISKASARQRAGRAGRVRPGKCYRLYTEE 409 (660)
Q Consensus 354 v~~VId~g~~k~~~~~~~~~~~~l~~~~~s~~~~~QR~GRaGR~~~G~~~~l~~~~ 409 (660)
+++||.++- .. ...|.+..+|+||+|||||..+|+++.+++..
T Consensus 511 v~lVvi~Da--------di-----fG~p~~~~~~iqriGRagR~~~G~vi~~~~~~ 553 (655)
T TIGR00631 511 VSLVAILDA--------DK-----EGFLRSERSLIQTIGRAARNVNGKVIMYADKI 553 (655)
T ss_pred CcEEEEeCc--------cc-----ccCCCCHHHHHHHhcCCCCCCCCEEEEEEcCC
Confidence 999997542 11 01167888999999999999999999888753
No 125
>PLN03142 Probable chromatin-remodeling complex ATPase chain; Provisional
Probab=99.57 E-value=2.5e-13 Score=156.79 Aligned_cols=111 Identities=15% Similarity=0.137 Sum_probs=91.4
Q ss_pred CCCcEEEEcCCHHHHHHHHHHHHHHhhhccCCCCCeEEEEccCCCCHHHHhhhcCCCCC---CCcEEEEeCCCcccccCC
Q 006122 275 PPGDILVFLTGQDDIDATIQLLTEEARTSKKNSSGLIILPLYSGLSRAEQEQVFSPTPR---GKRKVVISTNIAETSLTL 351 (660)
Q Consensus 275 ~~~~iLVF~~~~~~i~~l~~~L~~~~~~~~~~~~~~~v~~lh~~l~~~~r~~v~~~f~~---g~~~vlvaT~i~e~Gidi 351 (660)
.+.++|||+........+.+.|... ++....+||+++.++|..+++.|.+ +..-+|++|.+++.|||+
T Consensus 486 ~g~KVLIFSQft~~LdiLed~L~~~---------g~~y~rIdGsts~~eRq~~Id~Fn~~~s~~~VfLLSTrAGGlGINL 556 (1033)
T PLN03142 486 RDSRVLIFSQMTRLLDILEDYLMYR---------GYQYCRIDGNTGGEDRDASIDAFNKPGSEKFVFLLSTRAGGLGINL 556 (1033)
T ss_pred cCCeEEeehhHHHHHHHHHHHHHHc---------CCcEEEECCCCCHHHHHHHHHHhccccCCceEEEEeccccccCCch
Confidence 4568999999888777777777543 7788899999999999999999964 234678999999999999
Q ss_pred CCeEEEEeCCCccceeecCCCCcccceeeecCHHhHHHhhcccCCC---CCcEEEEccChHHhh
Q 006122 352 EGIVYVVDSGFSKQRFYNPISDIENLVVAPISKASARQRAGRAGRV---RPGKCYRLYTEEYFV 412 (660)
Q Consensus 352 p~v~~VId~g~~k~~~~~~~~~~~~l~~~~~s~~~~~QR~GRaGR~---~~G~~~~l~~~~~~~ 412 (660)
...++||.++. |.+++...|+.||+.|. ++-.+|+|++....+
T Consensus 557 t~Ad~VIiyD~------------------dWNP~~d~QAidRaHRIGQkk~V~VyRLIt~gTIE 602 (1033)
T PLN03142 557 ATADIVILYDS------------------DWNPQVDLQAQDRAHRIGQKKEVQVFRFCTEYTIE 602 (1033)
T ss_pred hhCCEEEEeCC------------------CCChHHHHHHHHHhhhcCCCceEEEEEEEeCCcHH
Confidence 99999998555 66777788999999987 445789999876554
No 126
>cd00079 HELICc Helicase superfamily c-terminal domain; associated with DEXDc-, DEAD-, and DEAH-box proteins, yeast initiation factor 4A, Ski2p, and Hepatitis C virus NS3 helicases; this domain is found in a wide variety of helicases and helicase related proteins; may not be an autonomously folding unit, but an integral part of the helicase; 4 helicase superfamilies at present according to the organization of their signature motifs; all helicases share the ability to unwind nucleic acid duplexes with a distinct directional polarity; they utilize the free energy from nucleoside triphosphate hydrolysis to fuel their translocation along DNA, unwinding the duplex in the process
Probab=99.54 E-value=3.2e-14 Score=127.69 Aligned_cols=103 Identities=27% Similarity=0.452 Sum_probs=94.0
Q ss_pred CCCcEEEEcCCHHHHHHHHHHHHHHhhhccCCCCCeEEEEccCCCCHHHHhhhcCCCCCCCcEEEEeCCCcccccCCCCe
Q 006122 275 PPGDILVFLTGQDDIDATIQLLTEEARTSKKNSSGLIILPLYSGLSRAEQEQVFSPTPRGKRKVVISTNIAETSLTLEGI 354 (660)
Q Consensus 275 ~~~~iLVF~~~~~~i~~l~~~L~~~~~~~~~~~~~~~v~~lh~~l~~~~r~~v~~~f~~g~~~vlvaT~i~e~Gidip~v 354 (660)
.++++|||+++...++.+++.|.+. ...+.++||+++..+|..+++.|.+|..+|+++|+++++|+|+|++
T Consensus 27 ~~~~~lvf~~~~~~~~~~~~~l~~~---------~~~~~~~~~~~~~~~~~~~~~~f~~~~~~ili~t~~~~~G~d~~~~ 97 (131)
T cd00079 27 KGGKVLIFCPSKKMLDELAELLRKP---------GIKVAALHGDGSQEEREEVLKDFREGEIVVLVATDVIARGIDLPNV 97 (131)
T ss_pred CCCcEEEEeCcHHHHHHHHHHHHhc---------CCcEEEEECCCCHHHHHHHHHHHHcCCCcEEEEcChhhcCcChhhC
Confidence 5788999999999999999999763 6789999999999999999999999999999999999999999999
Q ss_pred EEEEeCCCccceeecCCCCcccceeeecCHHhHHHhhcccCCC-CCcEEEE
Q 006122 355 VYVVDSGFSKQRFYNPISDIENLVVAPISKASARQRAGRAGRV-RPGKCYR 404 (660)
Q Consensus 355 ~~VId~g~~k~~~~~~~~~~~~l~~~~~s~~~~~QR~GRaGR~-~~G~~~~ 404 (660)
++||..+. +.+..++.|++||+||. ..|.|+.
T Consensus 98 ~~vi~~~~------------------~~~~~~~~Q~~GR~~R~~~~~~~~~ 130 (131)
T cd00079 98 SVVINYDL------------------PWSPSSYLQRIGRAGRAGQKGTAIL 130 (131)
T ss_pred CEEEEeCC------------------CCCHHHheecccccccCCCCceEEe
Confidence 99998665 78889999999999999 5787765
No 127
>PRK05298 excinuclease ABC subunit B; Provisional
Probab=99.52 E-value=1e-13 Score=156.44 Aligned_cols=112 Identities=21% Similarity=0.178 Sum_probs=99.3
Q ss_pred CCCcEEEEcCCHHHHHHHHHHHHHHhhhccCCCCCeEEEEccCCCCHHHHhhhcCCCCCCCcEEEEeCCCcccccCCCCe
Q 006122 275 PPGDILVFLTGQDDIDATIQLLTEEARTSKKNSSGLIILPLYSGLSRAEQEQVFSPTPRGKRKVVISTNIAETSLTLEGI 354 (660)
Q Consensus 275 ~~~~iLVF~~~~~~i~~l~~~L~~~~~~~~~~~~~~~v~~lh~~l~~~~r~~v~~~f~~g~~~vlvaT~i~e~Gidip~v 354 (660)
.+.++||||++++.++.+++.|.+. ++.+..+||+++..+|..+++.|+.|...|+|||+++++|+|+|++
T Consensus 445 ~g~~viIf~~t~~~ae~L~~~L~~~---------gi~~~~~h~~~~~~~R~~~l~~f~~g~i~vlV~t~~L~rGfdlp~v 515 (652)
T PRK05298 445 KGERVLVTTLTKRMAEDLTDYLKEL---------GIKVRYLHSDIDTLERVEIIRDLRLGEFDVLVGINLLREGLDIPEV 515 (652)
T ss_pred CCCEEEEEeCCHHHHHHHHHHHhhc---------ceeEEEEECCCCHHHHHHHHHHHHcCCceEEEEeCHHhCCccccCC
Confidence 4667999999999999999999775 7899999999999999999999999999999999999999999999
Q ss_pred EEEEeCCCccceeecCCCCcccceeeecCHHhHHHhhcccCCCCCcEEEEccCh
Q 006122 355 VYVVDSGFSKQRFYNPISDIENLVVAPISKASARQRAGRAGRVRPGKCYRLYTE 408 (660)
Q Consensus 355 ~~VId~g~~k~~~~~~~~~~~~l~~~~~s~~~~~QR~GRaGR~~~G~~~~l~~~ 408 (660)
++||.++... | | .|.+..+|+||+||+||...|+|+.+++.
T Consensus 516 ~lVii~d~ei---f----G------~~~~~~~yiqr~GR~gR~~~G~~i~~~~~ 556 (652)
T PRK05298 516 SLVAILDADK---E----G------FLRSERSLIQTIGRAARNVNGKVILYADK 556 (652)
T ss_pred cEEEEeCCcc---c----c------cCCCHHHHHHHhccccCCCCCEEEEEecC
Confidence 9999855311 0 1 15678899999999999999999998874
No 128
>PRK12326 preprotein translocase subunit SecA; Reviewed
Probab=99.51 E-value=3.1e-12 Score=139.82 Aligned_cols=118 Identities=21% Similarity=0.235 Sum_probs=82.5
Q ss_pred HHHHHHHHHHHHHhcCCCCcEEEEcCCHHHHHHHHHHHHHHhhhccCCCCCeEEEEccCCCCHHHHhhhcCCCCCCCcEE
Q 006122 259 YVQAAVSTVLLIHDKEPPGDILVFLTGQDDIDATIQLLTEEARTSKKNSSGLIILPLYSGLSRAEQEQVFSPTPRGKRKV 338 (660)
Q Consensus 259 ~~~~~~~~~~~~~~~~~~~~iLVF~~~~~~i~~l~~~L~~~~~~~~~~~~~~~v~~lh~~l~~~~r~~v~~~f~~g~~~v 338 (660)
.....+..+...+. .+.+|||.+.+.+..+.++..|.+. ++....+++.-...|-..|-++-+ .-.|
T Consensus 412 k~~Aii~ei~~~~~--~GrPVLVgt~sI~~SE~ls~~L~~~---------gI~h~vLNAk~~~~EA~IIa~AG~--~gaV 478 (764)
T PRK12326 412 KNDAIVEHIAEVHE--TGQPVLVGTHDVAESEELAERLRAA---------GVPAVVLNAKNDAEEARIIAEAGK--YGAV 478 (764)
T ss_pred HHHHHHHHHHHHHH--cCCCEEEEeCCHHHHHHHHHHHHhC---------CCcceeeccCchHhHHHHHHhcCC--CCcE
Confidence 34455566666654 5677999999999999999999876 566666777644444333333322 3469
Q ss_pred EEeCCCcccccCCC---------------CeEEEEeCCCccceeecCCCCcccceeeecCHHhHHHhhcccCCC-CCcEE
Q 006122 339 VISTNIAETSLTLE---------------GIVYVVDSGFSKQRFYNPISDIENLVVAPISKASARQRAGRAGRV-RPGKC 402 (660)
Q Consensus 339 lvaT~i~e~Gidip---------------~v~~VId~g~~k~~~~~~~~~~~~l~~~~~s~~~~~QR~GRaGR~-~~G~~ 402 (660)
.||||+|++|.||. +=-+||-+.+ +-|..-=.|-.|||||. .||.+
T Consensus 479 TIATNMAGRGTDIkLg~~~~~~~~~V~~~GGLhVIgTer------------------heSrRID~QLrGRaGRQGDpGss 540 (764)
T PRK12326 479 TVSTQMAGRGTDIRLGGSDEADRDRVAELGGLHVIGTGR------------------HRSERLDNQLRGRAGRQGDPGSS 540 (764)
T ss_pred EEEecCCCCccCeecCCCcccchHHHHHcCCcEEEeccC------------------CchHHHHHHHhcccccCCCCCce
Confidence 99999999999986 2225554433 55666667999999999 88876
Q ss_pred EEccC
Q 006122 403 YRLYT 407 (660)
Q Consensus 403 ~~l~~ 407 (660)
-.+++
T Consensus 541 ~f~lS 545 (764)
T PRK12326 541 VFFVS 545 (764)
T ss_pred eEEEE
Confidence 55555
No 129
>PRK07246 bifunctional ATP-dependent DNA helicase/DNA polymerase III subunit epsilon; Validated
Probab=99.50 E-value=5.6e-12 Score=145.43 Aligned_cols=134 Identities=13% Similarity=0.122 Sum_probs=87.8
Q ss_pred hhHHHHHHHHHHHHHhcCCCCcEEEEcCCHHHHHHHHHHHHHHhhhccCCCCCeEEEEccC-CCCHHHHhhhcCCCCCCC
Q 006122 257 SDYVQAAVSTVLLIHDKEPPGDILVFLTGQDDIDATIQLLTEEARTSKKNSSGLIILPLYS-GLSRAEQEQVFSPTPRGK 335 (660)
Q Consensus 257 ~~~~~~~~~~~~~~~~~~~~~~iLVF~~~~~~i~~l~~~L~~~~~~~~~~~~~~~v~~lh~-~l~~~~r~~v~~~f~~g~ 335 (660)
.+|.+.....+..+. ..+|++||+++|.+..+.+++.|... ...+ ...| +.+ +.++.+.|+++.
T Consensus 630 ~~~~~~~~~~i~~~~--~~~g~~LVLFtS~~~l~~v~~~l~~~---------~~~~-l~Qg~~~~---~~~l~~~F~~~~ 694 (820)
T PRK07246 630 EVYAEEIAKRLEELK--QLQQPILVLFNSKKHLLAVSDLLDQW---------QVSH-LAQEKNGT---AYNIKKRFDRGE 694 (820)
T ss_pred HHHHHHHHHHHHHHH--hcCCCEEEEECcHHHHHHHHHHHhhc---------CCcE-EEeCCCcc---HHHHHHHHHcCC
Confidence 456667777776655 35788999999999999999888542 2233 2223 222 345777888888
Q ss_pred cEEEEeCCCcccccCCC--CeEEEEeCCCccceeecC----------CCCcccc--eeeecCHHhHHHhhcccCCC--CC
Q 006122 336 RKVVISTNIAETSLTLE--GIVYVVDSGFSKQRFYNP----------ISDIENL--VVAPISKASARQRAGRAGRV--RP 399 (660)
Q Consensus 336 ~~vlvaT~i~e~Gidip--~v~~VId~g~~k~~~~~~----------~~~~~~l--~~~~~s~~~~~QR~GRaGR~--~~ 399 (660)
..||++|+.+.+|||+| +...||-.++.-..-.|| ..|-+.+ ...|.....+.|-+||.=|. ..
T Consensus 695 ~~vLlG~~sFwEGVD~p~~~~~~viI~kLPF~~P~dP~~~a~~~~~~~~g~~~F~~~~lP~A~iklkQg~GRLIRs~~D~ 774 (820)
T PRK07246 695 QQILLGLGSFWEGVDFVQADRMIEVITRLPFDNPEDPFVKKMNQYLLQEGKNPFYDYFLPMTILRLKQAIGRTMRREDQK 774 (820)
T ss_pred CeEEEecchhhCCCCCCCCCeEEEEEecCCCCCCCCHHHHHHHHHHHHhCCCchhheeHHHHHHHHHHHhcccccCCCCc
Confidence 89999999999999997 355566556542211111 0111111 12244567789999999998 46
Q ss_pred cEEEEc
Q 006122 400 GKCYRL 405 (660)
Q Consensus 400 G~~~~l 405 (660)
|..+.+
T Consensus 775 Gvv~il 780 (820)
T PRK07246 775 SAVLIL 780 (820)
T ss_pred EEEEEE
Confidence 765544
No 130
>KOG1123 consensus RNA polymerase II transcription initiation/nucleotide excision repair factor TFIIH, 3'-5' helicase subunit SSL2 [Transcription; Replication, recombination and repair]
Probab=99.49 E-value=1.1e-13 Score=141.28 Aligned_cols=316 Identities=14% Similarity=0.114 Sum_probs=179.6
Q ss_pred cHHHHHHHHHHHhcC---CEEEEEcCCCCcHHHHHHHHHHhccccCCCeEEEEeCchHHHHHHHHHHHHHHhCCeeeeEE
Q 006122 51 VYKYRTAILYLVETH---ATTIIVGETGSGKTTQIPQYLKEAGWADGGRVIACTQPRRLAVQAVASRVAEEMGVKVGEEV 127 (660)
Q Consensus 51 i~~~~~~i~~~l~~~---~~vii~apTGsGKT~~ip~~l~~~~~~~~~~~i~v~p~r~la~~~~~~~~~~~~~~~~~~~v 127 (660)
+.++|+.-+..+.+| +.-||+-|.|+|||.+-- .+...-++ ..+|.-+..+..+++.+.+.......-....
T Consensus 303 iRpYQEksL~KMFGNgRARSGiIVLPCGAGKtLVGv----TAa~tikK-~clvLcts~VSVeQWkqQfk~wsti~d~~i~ 377 (776)
T KOG1123|consen 303 IRPYQEKSLSKMFGNGRARSGIIVLPCGAGKTLVGV----TAACTIKK-SCLVLCTSAVSVEQWKQQFKQWSTIQDDQIC 377 (776)
T ss_pred cCchHHHHHHHHhCCCcccCceEEEecCCCCceeee----eeeeeecc-cEEEEecCccCHHHHHHHHHhhcccCccceE
Confidence 778999999998776 467889999999992211 01111122 2344456677788888877776655544444
Q ss_pred eeeeeccccCCCCCceEEEechHHHHHHHhc---------CCCCCCCcEEEEeCCCcCCcChhHHHHHHHHHHHhcCCce
Q 006122 128 GYTIRFEDFTNKDLTAIKFLTDGVLLREMMD---------DPLLTKYSVIMVDEAHERSISTDILLGLLKKIQRCRSDLR 198 (660)
Q Consensus 128 g~~~~~~~~~~~~~~~I~v~T~~~ll~~l~~---------~~~l~~~~~iIiDE~Her~~~~d~ll~~l~~~~~~~~~~k 198 (660)
-+.......... .+.|+|+|..++-.--.. --.-..++++|+||+|- .-..+.++++..-..--
T Consensus 378 rFTsd~Ke~~~~-~~gvvvsTYsMva~t~kRS~eaek~m~~l~~~EWGllllDEVHv------vPA~MFRRVlsiv~aHc 450 (776)
T KOG1123|consen 378 RFTSDAKERFPS-GAGVVVTTYSMVAYTGKRSHEAEKIMDFLRGREWGLLLLDEVHV------VPAKMFRRVLSIVQAHC 450 (776)
T ss_pred EeeccccccCCC-CCcEEEEeeehhhhcccccHHHHHHHHHHhcCeeeeEEeehhcc------chHHHHHHHHHHHHHHh
Confidence 444333332233 688999998776421100 00145789999999993 22334444443222222
Q ss_pred EEEeeccc--chHHHH--HHhhcCCCCCCCcccccCCCCCCeEEEECCccccceEE----ecCCCch---------hHHH
Q 006122 199 LIISSATI--EAKSMS--AFFHARKGRRGLEGVELVPRLEPAILSVEGRGFNVQIH----YVEEPVS---------DYVQ 261 (660)
Q Consensus 199 ii~~SAT~--~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~----~~~~~~~---------~~~~ 261 (660)
-++++||+ .-+++. +|+-+ |........++........+......-|.... |+..... ...-
T Consensus 451 KLGLTATLvREDdKI~DLNFLIG-PKlYEAnWmdL~~kGhIA~VqCaEVWCpMt~eFy~eYL~~~t~kr~lLyvMNP~KF 529 (776)
T KOG1123|consen 451 KLGLTATLVREDDKITDLNFLIG-PKLYEANWMDLQKKGHIAKVQCAEVWCPMTPEFYREYLRENTRKRMLLYVMNPNKF 529 (776)
T ss_pred hccceeEEeeccccccccceeec-chhhhccHHHHHhCCceeEEeeeeeecCCCHHHHHHHHhhhhhhhheeeecCcchh
Confidence 47899998 222222 12111 11111111111111111111111111111110 1110000 0012
Q ss_pred HHHHHHHHHHhcCCCCcEEEEcCCHHHHHHHHHHHHHHhhhccCCCCCeEEEEccCCCCHHHHhhhcCCCCC-CCcEEEE
Q 006122 262 AAVSTVLLIHDKEPPGDILVFLTGQDDIDATIQLLTEEARTSKKNSSGLIILPLYSGLSRAEQEQVFSPTPR-GKRKVVI 340 (660)
Q Consensus 262 ~~~~~~~~~~~~~~~~~iLVF~~~~~~i~~l~~~L~~~~~~~~~~~~~~~v~~lh~~l~~~~r~~v~~~f~~-g~~~vlv 340 (660)
++.+.++..|.. .+.+||||....-...+-+-.|. --++||..++.||.+|++.|+- ..++-|+
T Consensus 530 raCqfLI~~HE~-RgDKiIVFsDnvfALk~YAikl~--------------KpfIYG~Tsq~ERm~ILqnFq~n~~vNTIF 594 (776)
T KOG1123|consen 530 RACQFLIKFHER-RGDKIIVFSDNVFALKEYAIKLG--------------KPFIYGPTSQNERMKILQNFQTNPKVNTIF 594 (776)
T ss_pred HHHHHHHHHHHh-cCCeEEEEeccHHHHHHHHHHcC--------------CceEECCCchhHHHHHHHhcccCCccceEE
Confidence 234455566655 66789999888665555444442 2358999999999999999974 4788899
Q ss_pred eCCCcccccCCCCeEEEEeCCCccceeecCCCCcccceeeecCHHhHHHhhcccCCCCCc-------EEEEccChHHh
Q 006122 341 STNIAETSLTLEGIVYVVDSGFSKQRFYNPISDIENLVVAPISKASARQRAGRAGRVRPG-------KCYRLYTEEYF 411 (660)
Q Consensus 341 aT~i~e~Gidip~v~~VId~g~~k~~~~~~~~~~~~l~~~~~s~~~~~QR~GRaGR~~~G-------~~~~l~~~~~~ 411 (660)
-.-+..+++|+|..++.|. ..+. --|+.+-.||.||.-|.+.+ ..|.|++.+..
T Consensus 595 lSKVgDtSiDLPEAnvLIQ--------ISSH---------~GSRRQEAQRLGRILRAKk~~de~fnafFYSLVS~DTq 655 (776)
T KOG1123|consen 595 LSKVGDTSIDLPEANVLIQ--------ISSH---------GGSRRQEAQRLGRILRAKKRNDEEFNAFFYSLVSKDTQ 655 (776)
T ss_pred EeeccCccccCCcccEEEE--------Eccc---------ccchHHHHHHHHHHHHHhhcCccccceeeeeeeecchH
Confidence 9999999999999999986 1111 23566667999999887332 56777776543
No 131
>PF00271 Helicase_C: Helicase conserved C-terminal domain; InterPro: IPR001650 The domain, which defines this group of proteins is found in a wide variety of helicases and helicase related proteins. It may be that this is not an autonomously folding unit, but an integral part of the helicase. The eukaryotic translation initiation factor 4A (eIF4A) is a member of the DEA(D/H)-box RNA helicase family This is a diverse group of proteins that couples an ATPase activity to RNA binding and unwinding. The structure of the carboxyl-terminal domain of eIF4A has been determined to 1.75 A resolution; it has a parallel alpha-beta topology that superimposes, with minor variations, on the structures and conserved motifs of the equivalent domain in other, distantly related helicases [].; GO: 0003676 nucleic acid binding, 0004386 helicase activity, 0005524 ATP binding; PDB: 2Z83_A 2JGN_C 2I4I_A 2BMF_A 2BHR_B 1WP9_E 2WAX_C 2WAY_C 3JUX_A 3DIN_B ....
Probab=99.47 E-value=4e-14 Score=114.75 Aligned_cols=71 Identities=27% Similarity=0.403 Sum_probs=68.5
Q ss_pred CeEEEEccCCCCHHHHhhhcCCCCCCCcEEEEeCCCcccccCCCCeEEEEeCCCccceeecCCCCcccceeeecCHHhHH
Q 006122 309 GLIILPLYSGLSRAEQEQVFSPTPRGKRKVVISTNIAETSLTLEGIVYVVDSGFSKQRFYNPISDIENLVVAPISKASAR 388 (660)
Q Consensus 309 ~~~v~~lh~~l~~~~r~~v~~~f~~g~~~vlvaT~i~e~Gidip~v~~VId~g~~k~~~~~~~~~~~~l~~~~~s~~~~~ 388 (660)
++.+..+||+++.++|..+++.|.+|..+||+||+++++|+|+|++++||.++. |.+..+|.
T Consensus 7 ~~~~~~i~~~~~~~~r~~~~~~f~~~~~~vli~t~~~~~Gid~~~~~~vi~~~~------------------~~~~~~~~ 68 (78)
T PF00271_consen 7 GIKVAIIHGDMSQKERQEILKKFNSGEIRVLIATDILGEGIDLPDASHVIFYDP------------------PWSPEEYI 68 (78)
T ss_dssp TSSEEEESTTSHHHHHHHHHHHHHTTSSSEEEESCGGTTSSTSTTESEEEESSS------------------ESSHHHHH
T ss_pred CCcEEEEECCCCHHHHHHHHHHhhccCceEEEeecccccccccccccccccccc------------------CCCHHHHH
Confidence 788999999999999999999999999999999999999999999999999877 88999999
Q ss_pred HhhcccCCC
Q 006122 389 QRAGRAGRV 397 (660)
Q Consensus 389 QR~GRaGR~ 397 (660)
|++||+||.
T Consensus 69 Q~~GR~~R~ 77 (78)
T PF00271_consen 69 QRIGRAGRI 77 (78)
T ss_dssp HHHTTSSTT
T ss_pred HHhhcCCCC
Confidence 999999995
No 132
>PRK13103 secA preprotein translocase subunit SecA; Reviewed
Probab=99.40 E-value=1.4e-11 Score=138.09 Aligned_cols=120 Identities=18% Similarity=0.169 Sum_probs=75.1
Q ss_pred HHHHHHHHHHhcCCEEEEEcCCCCcHHHHHHHHHHhccccCCCeEEEEeCchHHHHHH--HHHHHHHHhCCeeeeEEeee
Q 006122 53 KYRTAILYLVETHATTIIVGETGSGKTTQIPQYLKEAGWADGGRVIACTQPRRLAVQA--VASRVAEEMGVKVGEEVGYT 130 (660)
Q Consensus 53 ~~~~~i~~~l~~~~~vii~apTGsGKT~~ip~~l~~~~~~~~~~~i~v~p~r~la~~~--~~~~~~~~~~~~~~~~vg~~ 130 (660)
.+--+++-.+.=++--|....||+|||..+...++.... .+.++.+++|+--||.+. ....+.+.+|..++...+..
T Consensus 83 ~ydVQliGg~~Lh~G~iaEM~TGEGKTLvA~l~a~l~al-~G~~VhvvT~ndyLA~RD~e~m~~l~~~lGl~v~~i~~~~ 161 (913)
T PRK13103 83 HFDVQLIGGMTLHEGKIAEMRTGEGKTLVGTLAVYLNAL-SGKGVHVVTVNDYLARRDANWMRPLYEFLGLSVGIVTPFQ 161 (913)
T ss_pred cchhHHHhhhHhccCccccccCCCCChHHHHHHHHHHHH-cCCCEEEEeCCHHHHHHHHHHHHHHhcccCCEEEEECCCC
Confidence 333344444433444588999999999443322222222 456678899998888773 34445566788888776644
Q ss_pred eeccccCCCCCceEEEechHHH-HHHHhcC-------CCCCCCcEEEEeCCC
Q 006122 131 IRFEDFTNKDLTAIKFLTDGVL-LREMMDD-------PLLTKYSVIMVDEAH 174 (660)
Q Consensus 131 ~~~~~~~~~~~~~I~v~T~~~l-l~~l~~~-------~~l~~~~~iIiDE~H 174 (660)
...+....- .++|+|+|...+ .+.|..+ .....+.++||||+|
T Consensus 162 ~~~err~~Y-~~dI~YGT~~e~gFDYLrD~~~~~~~~~vqr~l~~aIVDEvD 212 (913)
T PRK13103 162 PPEEKRAAY-AADITYGTNNEFGFDYLRDNMAFSLDDKFQRELNFAVIDEVD 212 (913)
T ss_pred CHHHHHHHh-cCCEEEEcccccccchhhccceechhhhcccccceeEechhh
Confidence 333333333 589999999876 2222221 125889999999999
No 133
>KOG0951 consensus RNA helicase BRR2, DEAD-box superfamily [RNA processing and modification]
Probab=99.40 E-value=9.6e-12 Score=139.37 Aligned_cols=306 Identities=17% Similarity=0.169 Sum_probs=191.2
Q ss_pred hcCCEEEEEcCCCCcHHHHHHHHHHhccccCCCeEEEEeCchHHHHHHHHHH---HHHHhCCeeeeEEeeeeeccccCCC
Q 006122 63 ETHATTIIVGETGSGKTTQIPQYLKEAGWADGGRVIACTQPRRLAVQAVASR---VAEEMGVKVGEEVGYTIRFEDFTNK 139 (660)
Q Consensus 63 ~~~~~vii~apTGsGKT~~ip~~l~~~~~~~~~~~i~v~p~r~la~~~~~~~---~~~~~~~~~~~~vg~~~~~~~~~~~ 139 (660)
+++++++|.+|+|||||.....+++. .....++++++|.-.++....... +....|..+....|.. ..+.+...
T Consensus 1157 ~~nd~v~vga~~gsgkt~~ae~a~l~--~~~~~~~vyi~p~~~i~~~~~~~w~~~f~~~~G~~~~~l~ge~-s~~lkl~~ 1233 (1674)
T KOG0951|consen 1157 NTNDNVLVGAPNGSGKTACAELALLR--PDTIGRAVYIAPLEEIADEQYRDWEKKFSKLLGLRIVKLTGET-SLDLKLLQ 1233 (1674)
T ss_pred cccceEEEecCCCCchhHHHHHHhcC--CccceEEEEecchHHHHHHHHHHHHHhhccccCceEEecCCcc-ccchHHhh
Confidence 57889999999999999887776665 334567899999888777655443 3333444444444422 22223333
Q ss_pred CCceEEEechHHHHHHHhcCCCCCCCcEEEEeCCCcCC-cCh---hHHHHHHHHHHHhcCCceEEEeeccc-chHHHHHH
Q 006122 140 DLTAIKFLTDGVLLREMMDDPLLTKYSVIMVDEAHERS-IST---DILLGLLKKIQRCRSDLRLIISSATI-EAKSMSAF 214 (660)
Q Consensus 140 ~~~~I~v~T~~~ll~~l~~~~~l~~~~~iIiDE~Her~-~~~---d~ll~~l~~~~~~~~~~kii~~SAT~-~~~~~~~~ 214 (660)
..+|+++||+.+-.. + ..+.+++.|.||.|..+ ... ..+..+........+++|++.+|..+ ++.++
T Consensus 1234 -~~~vii~tpe~~d~l-q---~iQ~v~l~i~d~lh~igg~~g~v~evi~S~r~ia~q~~k~ir~v~ls~~lana~d~--- 1305 (1674)
T KOG0951|consen 1234 -KGQVIISTPEQWDLL-Q---SIQQVDLFIVDELHLIGGVYGAVYEVICSMRYIASQLEKKIRVVALSSSLANARDL--- 1305 (1674)
T ss_pred -hcceEEechhHHHHH-h---hhhhcceEeeehhhhhcccCCceEEEEeeHHHHHHHHHhheeEEEeehhhccchhh---
Confidence 689999999987654 2 57789999999999654 221 12222222233355789999999888 77766
Q ss_pred hhcCCCCCCCcccccCCCCCCeEEEECCccccceEEecCCCchhHHHH-------HHHHHHHHHhcCCCCcEEEEcCCHH
Q 006122 215 FHARKGRRGLEGVELVPRLEPAILSVEGRGFNVQIHYVEEPVSDYVQA-------AVSTVLLIHDKEPPGDILVFLTGQD 287 (660)
Q Consensus 215 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~-------~~~~~~~~~~~~~~~~iLVF~~~~~ 287 (660)
++....+ ..-+....|..|.+++.-......+... ....+... ...+++.+||+|+++
T Consensus 1306 ig~s~~~-------------v~Nf~p~~R~~Pl~i~i~~~~~~~~~~~~~am~~~~~~ai~~~--a~~~k~~~vf~p~rk 1370 (1674)
T KOG0951|consen 1306 IGASSSG-------------VFNFSPSVRPVPLEIHIQSVDISHFESRMLAMTKPTYTAIVRH--AGNRKPAIVFLPTRK 1370 (1674)
T ss_pred ccccccc-------------eeecCcccCCCceeEEEEEeccchhHHHHHHhhhhHHHHHHHH--hcCCCCeEEEeccch
Confidence 2222211 0012223344454444333222222111 11222222 235678999999999
Q ss_pred HHHHHHHHHHHHhhh---------------ccCCCCCeEEEEccCCCCHHHHhhhcCCCCCCCcEEEEeCCCcccccCCC
Q 006122 288 DIDATIQLLTEEART---------------SKKNSSGLIILPLYSGLSRAEQEQVFSPTPRGKRKVVISTNIAETSLTLE 352 (660)
Q Consensus 288 ~i~~l~~~L~~~~~~---------------~~~~~~~~~v~~lh~~l~~~~r~~v~~~f~~g~~~vlvaT~i~e~Gidip 352 (660)
++..++..+-..... ...+.-...|. |-+|+..++..+-..|..|.+.|+|...- -.|+...
T Consensus 1371 ~~~~~a~~~~~~s~~~~~~~l~~~~e~~~~~l~e~l~~gvg--~e~~s~~d~~iv~~l~e~g~i~v~v~s~~-~~~~~~~ 1447 (1674)
T KOG0951|consen 1371 HARLVAVDLVTFSHADEPDYLLSELEECDETLRESLKHGVG--HEGLSSNDQEIVQQLFEAGAIQVCVMSRD-CYGTKLK 1447 (1674)
T ss_pred hhhhhhhccchhhccCcHHHHHHHHhcchHhhhhccccccc--ccccCcchHHHHHHHHhcCcEEEEEEEcc-ccccccc
Confidence 998887665433211 01111223344 88999999999989999999999888766 6777765
Q ss_pred CeEEEEeCCCccceeecCCCCcccceeeecCHHhHHHhhcccCCCCCcEEEEccC
Q 006122 353 GIVYVVDSGFSKQRFYNPISDIENLVVAPISKASARQRAGRAGRVRPGKCYRLYT 407 (660)
Q Consensus 353 ~v~~VId~g~~k~~~~~~~~~~~~l~~~~~s~~~~~QR~GRaGR~~~G~~~~l~~ 407 (660)
.--+|| .| ..+||...... .+.+.++..|+.|+|.| .|+|+.+..
T Consensus 1448 ~~lVvv-mg---t~~ydg~e~~~----~~y~i~~ll~m~G~a~~--~~k~vi~~~ 1492 (1674)
T KOG0951|consen 1448 AHLVVV-MG---TQYYDGKEHSY----EDYPIAELLQMVGLASG--AGKCVIMCH 1492 (1674)
T ss_pred ceEEEE-ec---ceeeccccccc----ccCchhHHHHHhhhhcC--CccEEEEec
Confidence 443333 22 35688765543 27788999999999999 677777664
No 134
>cd00046 DEXDc DEAD-like helicases superfamily. A diverse family of proteins involved in ATP-dependent RNA or DNA unwinding. This domain contains the ATP-binding region.
Probab=99.39 E-value=5.4e-12 Score=114.26 Aligned_cols=138 Identities=32% Similarity=0.323 Sum_probs=85.9
Q ss_pred CEEEEEcCCCCcHHHHHHHHHHhcccc-CCCeEEEEeCchHHHHHHHHHHHHHHhC--CeeeeEEeeeeeccc--cCCCC
Q 006122 66 ATTIIVGETGSGKTTQIPQYLKEAGWA-DGGRVIACTQPRRLAVQAVASRVAEEMG--VKVGEEVGYTIRFED--FTNKD 140 (660)
Q Consensus 66 ~~vii~apTGsGKT~~ip~~l~~~~~~-~~~~~i~v~p~r~la~~~~~~~~~~~~~--~~~~~~vg~~~~~~~--~~~~~ 140 (660)
+++++.+|||+|||+++..++...... ...++++++|.+.+.. +..+.+..... ..+....+....... ....
T Consensus 1 ~~~~i~~~~G~GKT~~~~~~~~~~~~~~~~~~~lv~~p~~~l~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~- 78 (144)
T cd00046 1 RDVLLAAPTGSGKTLAALLPILELLDSLKGGQVLVLAPTRELAN-QVAERLKELFGEGIKVGYLIGGTSIKQQEKLLSG- 78 (144)
T ss_pred CCEEEECCCCCchhHHHHHHHHHHHhcccCCCEEEEcCcHHHHH-HHHHHHHHHhhCCcEEEEEecCcchhHHHHHhcC-
Confidence 358999999999998777666655432 3355676766665554 44455555443 444333332221111 0123
Q ss_pred CceEEEechHHHHHHHhcCCC-CCCCcEEEEeCCCcCCcChhHHHHHHHHHHHhcCCceEEEeeccc
Q 006122 141 LTAIKFLTDGVLLREMMDDPL-LTKYSVIMVDEAHERSISTDILLGLLKKIQRCRSDLRLIISSATI 206 (660)
Q Consensus 141 ~~~I~v~T~~~ll~~l~~~~~-l~~~~~iIiDE~Her~~~~d~ll~~l~~~~~~~~~~kii~~SAT~ 206 (660)
..+|+++|++.+.+.+..... ...+++||+||+|.-.... ................+++++|||+
T Consensus 79 ~~~i~i~t~~~~~~~~~~~~~~~~~~~~iiiDE~h~~~~~~-~~~~~~~~~~~~~~~~~~i~~saTp 144 (144)
T cd00046 79 KTDIVVGTPGRLLDELERLKLSLKKLDLLILDEAHRLLNQG-FGLLGLKILLKLPKDRQVLLLSATP 144 (144)
T ss_pred CCCEEEECcHHHHHHHHcCCcchhcCCEEEEeCHHHHhhcc-hHHHHHHHHhhCCccceEEEEeccC
Confidence 689999999999888766543 6678999999999432221 1111122333455678899999996
No 135
>TIGR02562 cas3_yersinia CRISPR-associated helicase Cas3. The helicase in many CRISPR-associated (cas) gene clusters is designated Cas3, and most Cas3 proteins are described by model TIGR01587. Members of this family are considerably larger, show a number of motifs in common with TIGR01587 sequences, and replace Cas3 in some CRISPR/cas loci in a number of Proteobacteria, including Yersinia pestis, Chromobacterium violaceum, Erwinia carotovora subsp. atroseptica SCRI1043, Photorhabdus luminescens subsp. laumondii TTO1, Legionella pneumophila, etc.
Probab=99.39 E-value=4.4e-11 Score=135.11 Aligned_cols=96 Identities=17% Similarity=0.094 Sum_probs=71.3
Q ss_pred EEEEcCCHHHHHHHHHHHHHHhhhccCCCCCeEEEEccCCCCHHHHhhhcCCC--------------------------C
Q 006122 279 ILVFLTGQDDIDATIQLLTEEARTSKKNSSGLIILPLYSGLSRAEQEQVFSPT--------------------------P 332 (660)
Q Consensus 279 iLVF~~~~~~i~~l~~~L~~~~~~~~~~~~~~~v~~lh~~l~~~~r~~v~~~f--------------------------~ 332 (660)
.||=+.+.+.+-.+++.|.+.... ....+.+..|||..+...|..+++.. .
T Consensus 759 GliR~anI~p~V~~A~~L~~~~~~---~~~~i~~~~yHSr~~l~~Rs~~E~~Ld~~L~R~~~~~~~~~~~i~~~l~~~~~ 835 (1110)
T TIGR02562 759 GLIRVANIDPLIRLAQFLYALLAE---EKYQIHLCCYHAQDPLLLRSYIERRLDQLLTRHKPEQLFQDDEIIDLMQNSPA 835 (1110)
T ss_pred EEEEEcCchHHHHHHHHHHhhccc---cCCceeEEEecccChHHHHHHHHHHHHHHhcccChhhhhchHHHHHHHhcccc
Confidence 377788888888889888776432 22467789999998776666554221 1
Q ss_pred CCCcEEEEeCCCcccccCCCCeEEEEeCCCccceeecCCCCcccceeeecCHHhHHHhhcccCCCC
Q 006122 333 RGKRKVVISTNIAETSLTLEGIVYVVDSGFSKQRFYNPISDIENLVVAPISKASARQRAGRAGRVR 398 (660)
Q Consensus 333 ~g~~~vlvaT~i~e~Gidip~v~~VId~g~~k~~~~~~~~~~~~l~~~~~s~~~~~QR~GRaGR~~ 398 (660)
.+...|+|||.+.|.|+|+. .+++| +.+.+..+.+||+||..|.+
T Consensus 836 ~~~~~i~v~Tqv~E~g~D~d-fd~~~--------------------~~~~~~~sliQ~aGR~~R~~ 880 (1110)
T TIGR02562 836 LNHLFIVLATPVEEVGRDHD-YDWAI--------------------ADPSSMRSIIQLAGRVNRHR 880 (1110)
T ss_pred cCCCeEEEEeeeEEEEeccc-CCeee--------------------eccCcHHHHHHHhhcccccc
Confidence 35779999999999999987 33333 33778889999999999973
No 136
>PRK08074 bifunctional ATP-dependent DNA helicase/DNA polymerase III subunit epsilon; Validated
Probab=99.38 E-value=1.6e-10 Score=135.81 Aligned_cols=141 Identities=17% Similarity=0.261 Sum_probs=92.4
Q ss_pred hhHHHHHHHHHHHHHhcCCCCcEEEEcCCHHHHHHHHHHHHHHhhhccCCCCCeEEEEccCCCCHHHHhhhcCCCCCCCc
Q 006122 257 SDYVQAAVSTVLLIHDKEPPGDILVFLTGQDDIDATIQLLTEEARTSKKNSSGLIILPLYSGLSRAEQEQVFSPTPRGKR 336 (660)
Q Consensus 257 ~~~~~~~~~~~~~~~~~~~~~~iLVF~~~~~~i~~l~~~L~~~~~~~~~~~~~~~v~~lh~~l~~~~r~~v~~~f~~g~~ 336 (660)
..|.+.....+..+... .+|++|||++|.+..+.+++.|..... ..++.+.. . +++...|.++++.|+++..
T Consensus 734 ~~~~~~la~~i~~l~~~-~~g~~LVLFtSy~~l~~v~~~l~~~~~-----~~~~~ll~-Q-g~~~~~r~~l~~~F~~~~~ 805 (928)
T PRK08074 734 EEYIEEVAAYIAKIAKA-TKGRMLVLFTSYEMLKKTYYNLKNEEE-----LEGYVLLA-Q-GVSSGSRARLTKQFQQFDK 805 (928)
T ss_pred HHHHHHHHHHHHHHHHh-CCCCEEEEECCHHHHHHHHHHHhhccc-----ccCceEEe-c-CCCCCCHHHHHHHHHhcCC
Confidence 45666667777666543 567899999999999999999976421 11222322 2 3333456778888888888
Q ss_pred EEEEeCCCcccccCCCC--eEEEEeCCCccceeecC----------CCCcccc--eeeecCHHhHHHhhcccCCC--CCc
Q 006122 337 KVVISTNIAETSLTLEG--IVYVVDSGFSKQRFYNP----------ISDIENL--VVAPISKASARQRAGRAGRV--RPG 400 (660)
Q Consensus 337 ~vlvaT~i~e~Gidip~--v~~VId~g~~k~~~~~~----------~~~~~~l--~~~~~s~~~~~QR~GRaGR~--~~G 400 (660)
.||++|..+.+|||+|+ .+.||-.++.-..--|| ..|-+.+ ...|.....+.|-+||.=|. ..|
T Consensus 806 ~iLlG~~sFwEGVD~pg~~l~~viI~kLPF~~p~dp~~~a~~~~~~~~g~~~F~~~~lP~A~~~lkQg~GRlIRs~~D~G 885 (928)
T PRK08074 806 AILLGTSSFWEGIDIPGDELSCLVIVRLPFAPPDQPVMEAKSEWAKEQGENPFQELSLPQAVLRFKQGFGRLIRTETDRG 885 (928)
T ss_pred eEEEecCcccCccccCCCceEEEEEecCCCCCCCCHHHHHHHHHHHHhCCCchhhhhhHHHHHHHHhhhhhhcccCCceE
Confidence 99999999999999997 47787777643110010 0111111 11255567789999999988 456
Q ss_pred EEEEc
Q 006122 401 KCYRL 405 (660)
Q Consensus 401 ~~~~l 405 (660)
..+.+
T Consensus 886 ~v~il 890 (928)
T PRK08074 886 TVFVL 890 (928)
T ss_pred EEEEe
Confidence 65543
No 137
>smart00487 DEXDc DEAD-like helicases superfamily.
Probab=99.36 E-value=6.9e-12 Score=120.81 Aligned_cols=164 Identities=26% Similarity=0.210 Sum_probs=104.4
Q ss_pred CCcHHHHHHHHHHHhcC-CEEEEEcCCCCcHHHHHHHHHHhccccC-CCeEEEEeCchHHHHHHHHHHHHHHhCC---ee
Q 006122 49 LPVYKYRTAILYLVETH-ATTIIVGETGSGKTTQIPQYLKEAGWAD-GGRVIACTQPRRLAVQAVASRVAEEMGV---KV 123 (660)
Q Consensus 49 lPi~~~~~~i~~~l~~~-~~vii~apTGsGKT~~ip~~l~~~~~~~-~~~~i~v~p~r~la~~~~~~~~~~~~~~---~~ 123 (660)
.+..++|.+++..+... +++++.+|||+|||+.+..++....... ..++++++|.+.++.+ +.+++...... ..
T Consensus 7 ~~~~~~Q~~~~~~~~~~~~~~~i~~~~GsGKT~~~~~~~~~~~~~~~~~~~l~~~p~~~~~~~-~~~~~~~~~~~~~~~~ 85 (201)
T smart00487 7 EPLRPYQKEAIEALLSGLRDVILAAPTGSGKTLAALLPALEALKRGKGKRVLVLVPTRELAEQ-WAEELKKLGPSLGLKV 85 (201)
T ss_pred CCCCHHHHHHHHHHHcCCCcEEEECCCCCchhHHHHHHHHHHhcccCCCcEEEEeCCHHHHHH-HHHHHHHHhccCCeEE
Confidence 45678899999998887 8999999999999986666665553322 3567888888777776 45555554432 11
Q ss_pred eeEE-eeeee-ccccCCCCCceEEEechHHHHHHHhcCC-CCCCCcEEEEeCCCcCCcChhHHHHHHHHHHHhcCCceEE
Q 006122 124 GEEV-GYTIR-FEDFTNKDLTAIKFLTDGVLLREMMDDP-LLTKYSVIMVDEAHERSISTDILLGLLKKIQRCRSDLRLI 200 (660)
Q Consensus 124 ~~~v-g~~~~-~~~~~~~~~~~I~v~T~~~ll~~l~~~~-~l~~~~~iIiDE~Her~~~~d~ll~~l~~~~~~~~~~kii 200 (660)
.... +.... ..........+++++|++.+.+.+.... ....++++|+||+|..... .....+...+....+..+++
T Consensus 86 ~~~~~~~~~~~~~~~~~~~~~~v~~~t~~~l~~~~~~~~~~~~~~~~iIiDE~h~~~~~-~~~~~~~~~~~~~~~~~~~v 164 (201)
T smart00487 86 VGLYGGDSKREQLRKLESGKTDILVTTPGRLLDLLENDLLELSNVDLVILDEAHRLLDG-GFGDQLEKLLKLLPKNVQLL 164 (201)
T ss_pred EEEeCCcchHHHHHHHhcCCCCEEEeChHHHHHHHHcCCcCHhHCCEEEEECHHHHhcC-CcHHHHHHHHHhCCccceEE
Confidence 1111 11100 0001122123999999999999887755 4778999999999954421 12222222222235678999
Q ss_pred Eeeccc--chHHHHHH
Q 006122 201 ISSATI--EAKSMSAF 214 (660)
Q Consensus 201 ~~SAT~--~~~~~~~~ 214 (660)
++|||+ +.......
T Consensus 165 ~~saT~~~~~~~~~~~ 180 (201)
T smart00487 165 LLSATPPEEIENLLEL 180 (201)
T ss_pred EEecCCchhHHHHHHH
Confidence 999999 34444433
No 138
>PRK12903 secA preprotein translocase subunit SecA; Reviewed
Probab=99.36 E-value=6.7e-11 Score=131.25 Aligned_cols=116 Identities=24% Similarity=0.261 Sum_probs=79.4
Q ss_pred HHHHHHHHHHHHhcCCCCcEEEEcCCHHHHHHHHHHHHHHhhhccCCCCCeEEEEccCCCCHHHHhhhcCCCCCC-CcEE
Q 006122 260 VQAAVSTVLLIHDKEPPGDILVFLTGQDDIDATIQLLTEEARTSKKNSSGLIILPLYSGLSRAEQEQVFSPTPRG-KRKV 338 (660)
Q Consensus 260 ~~~~~~~~~~~~~~~~~~~iLVF~~~~~~i~~l~~~L~~~~~~~~~~~~~~~v~~lh~~l~~~~r~~v~~~f~~g-~~~v 338 (660)
....+..+...+. .+.+|||.+.+.+..+.++..|.+. ++.-..+++.-...|-..|-+ .| .-.|
T Consensus 412 ~~Aii~ei~~~~~--~gqPVLVgT~SIe~SE~ls~~L~~~---------gi~h~vLNAk~~e~EA~IIa~---AG~~GaV 477 (925)
T PRK12903 412 WKAVVKEVKRVHK--KGQPILIGTAQVEDSETLHELLLEA---------NIPHTVLNAKQNAREAEIIAK---AGQKGAI 477 (925)
T ss_pred HHHHHHHHHHHHh--cCCCEEEEeCcHHHHHHHHHHHHHC---------CCCceeecccchhhHHHHHHh---CCCCCeE
Confidence 3445555555554 4678999999999999999999876 555556666533334333332 34 4579
Q ss_pred EEeCCCcccccCCCCeE--------EEEeCCCccceeecCCCCcccceeeecCHHhHHHhhcccCCC-CCcEEEEccC
Q 006122 339 VISTNIAETSLTLEGIV--------YVVDSGFSKQRFYNPISDIENLVVAPISKASARQRAGRAGRV-RPGKCYRLYT 407 (660)
Q Consensus 339 lvaT~i~e~Gidip~v~--------~VId~g~~k~~~~~~~~~~~~l~~~~~s~~~~~QR~GRaGR~-~~G~~~~l~~ 407 (660)
.||||+|++|.||.--. +||-+.. +-|..-=.|-.||+||. .||.+--+.+
T Consensus 478 TIATNMAGRGTDI~Lg~~V~~~GGLhVIgTer------------------heSrRIDnQLrGRaGRQGDpGss~f~lS 537 (925)
T PRK12903 478 TIATNMAGRGTDIKLSKEVLELGGLYVLGTDK------------------AESRRIDNQLRGRSGRQGDVGESRFFIS 537 (925)
T ss_pred EEecccccCCcCccCchhHHHcCCcEEEeccc------------------CchHHHHHHHhcccccCCCCCcceEEEe
Confidence 99999999999986322 6665444 44444445999999999 8886544433
No 139
>smart00490 HELICc helicase superfamily c-terminal domain.
Probab=99.30 E-value=2.5e-12 Score=105.00 Aligned_cols=71 Identities=41% Similarity=0.599 Sum_probs=67.5
Q ss_pred CeEEEEccCCCCHHHHhhhcCCCCCCCcEEEEeCCCcccccCCCCeEEEEeCCCccceeecCCCCcccceeeecCHHhHH
Q 006122 309 GLIILPLYSGLSRAEQEQVFSPTPRGKRKVVISTNIAETSLTLEGIVYVVDSGFSKQRFYNPISDIENLVVAPISKASAR 388 (660)
Q Consensus 309 ~~~v~~lh~~l~~~~r~~v~~~f~~g~~~vlvaT~i~e~Gidip~v~~VId~g~~k~~~~~~~~~~~~l~~~~~s~~~~~ 388 (660)
++.+..+||++++++|..+++.|.+|..+|+++|+++++|+|+|++++||..+. |.+..++.
T Consensus 11 ~~~~~~~~~~~~~~~r~~~~~~f~~~~~~vli~t~~~~~Gi~~~~~~~vi~~~~------------------~~~~~~~~ 72 (82)
T smart00490 11 GIKVARLHGGLSQEEREEILEKFNNGKIKVLVATDVAERGLDLPGVDLVIIYDL------------------PWSPASYI 72 (82)
T ss_pred CCeEEEEECCCCHHHHHHHHHHHHcCCCeEEEECChhhCCcChhcCCEEEEeCC------------------CCCHHHHH
Confidence 788999999999999999999999999999999999999999999999998776 88999999
Q ss_pred HhhcccCCC
Q 006122 389 QRAGRAGRV 397 (660)
Q Consensus 389 QR~GRaGR~ 397 (660)
|++||+||.
T Consensus 73 Q~~gR~~R~ 81 (82)
T smart00490 73 QRIGRAGRA 81 (82)
T ss_pred HhhcccccC
Confidence 999999995
No 140
>PF07652 Flavi_DEAD: Flavivirus DEAD domain ; InterPro: IPR011492 This is the Flavivirus DEAD domain. The domain is related to the DEAD/DEAH box helicase domain which is found in a large family of ATPases.; GO: 0005524 ATP binding, 0008026 ATP-dependent helicase activity, 0019079 viral genome replication; PDB: 2QEQ_A 2V6J_A 2V6I_A 8OHM_A 4A92_B 1JR6_A 1HEI_A 1ONB_A 1A1V_A 1YMF_A ....
Probab=99.30 E-value=4.2e-11 Score=105.25 Aligned_cols=136 Identities=21% Similarity=0.282 Sum_probs=83.9
Q ss_pred hcCCEEEEEcCCCCcHHH-HHHHHHHhccccCCCeEEEEeCchHHHHHHHHHHHHHHhCCeeeeEEeeeeeccccCCCCC
Q 006122 63 ETHATTIIVGETGSGKTT-QIPQYLKEAGWADGGRVIACTQPRRLAVQAVASRVAEEMGVKVGEEVGYTIRFEDFTNKDL 141 (660)
Q Consensus 63 ~~~~~vii~apTGsGKT~-~ip~~l~~~~~~~~~~~i~v~p~r~la~~~~~~~~~~~~~~~~~~~vg~~~~~~~~~~~~~ 141 (660)
.+++..+|...+|+|||. .+|.++.+. ...+.+++++.|+|.++. ++.+.+. +.. +.+....-......+
T Consensus 2 ~kg~~~~~d~hpGaGKTr~vlp~~~~~~-i~~~~rvLvL~PTRvva~-em~~aL~---~~~----~~~~t~~~~~~~~g~ 72 (148)
T PF07652_consen 2 RKGELTVLDLHPGAGKTRRVLPEIVREA-IKRRLRVLVLAPTRVVAE-EMYEALK---GLP----VRFHTNARMRTHFGS 72 (148)
T ss_dssp STTEEEEEE--TTSSTTTTHHHHHHHHH-HHTT--EEEEESSHHHHH-HHHHHTT---TSS----EEEESTTSS----SS
T ss_pred CCCceeEEecCCCCCCcccccHHHHHHH-HHccCeEEEecccHHHHH-HHHHHHh---cCC----cccCceeeeccccCC
Confidence 357788999999999996 688887766 556778898998886655 4444332 222 222222111122236
Q ss_pred ceEEEechHHHHHHHhcCCCCCCCcEEEEeCCCcCCcChhHHHHHHHHHHHhcCCceEEEeecccch
Q 006122 142 TAIKFLTDGVLLREMMDDPLLTKYSVIMVDEAHERSISTDILLGLLKKIQRCRSDLRLIISSATIEA 208 (660)
Q Consensus 142 ~~I~v~T~~~ll~~l~~~~~l~~~~~iIiDE~Her~~~~d~ll~~l~~~~~~~~~~kii~~SAT~~~ 208 (660)
.-|.++|.+.+.+.+.+...+.+|++||+||+|--+..+-...+.++..... ...++|+||||++.
T Consensus 73 ~~i~vMc~at~~~~~~~p~~~~~yd~II~DEcH~~Dp~sIA~rg~l~~~~~~-g~~~~i~mTATPPG 138 (148)
T PF07652_consen 73 SIIDVMCHATYGHFLLNPCRLKNYDVIIMDECHFTDPTSIAARGYLRELAES-GEAKVIFMTATPPG 138 (148)
T ss_dssp SSEEEEEHHHHHHHHHTSSCTTS-SEEEECTTT--SHHHHHHHHHHHHHHHT-TS-EEEEEESS-TT
T ss_pred CcccccccHHHHHHhcCcccccCccEEEEeccccCCHHHHhhheeHHHhhhc-cCeeEEEEeCCCCC
Confidence 7889999999998887755589999999999994333333444455555333 45789999999854
No 141
>CHL00122 secA preprotein translocase subunit SecA; Validated
Probab=99.30 E-value=2.7e-10 Score=127.22 Aligned_cols=118 Identities=22% Similarity=0.249 Sum_probs=78.3
Q ss_pred HHHHHHHHHHhcCCEEEEEcCCCCcHHH--HHHHHHHhccccCCCeEEEEeCchHHHHH--HHHHHHHHHhCCeeeeEEe
Q 006122 53 KYRTAILYLVETHATTIIVGETGSGKTT--QIPQYLKEAGWADGGRVIACTQPRRLAVQ--AVASRVAEEMGVKVGEEVG 128 (660)
Q Consensus 53 ~~~~~i~~~l~~~~~vii~apTGsGKT~--~ip~~l~~~~~~~~~~~i~v~p~r~la~~--~~~~~~~~~~~~~~~~~vg 128 (660)
.+--+++-++.-++--|....||.|||. .+|.++... .+..+.+||+...||.. .+...+-+.+|.++|...+
T Consensus 77 ~ydvQlig~l~L~~G~IaEm~TGEGKTL~a~l~ayl~aL---~G~~VhVvT~NdyLA~RD~e~m~pvy~~LGLsvg~i~~ 153 (870)
T CHL00122 77 HFDVQLIGGLVLNDGKIAEMKTGEGKTLVATLPAYLNAL---TGKGVHIVTVNDYLAKRDQEWMGQIYRFLGLTVGLIQE 153 (870)
T ss_pred CCchHhhhhHhhcCCccccccCCCCchHHHHHHHHHHHh---cCCceEEEeCCHHHHHHHHHHHHHHHHHcCCceeeeCC
Confidence 3334455555445556999999999993 345544332 45668889999999887 5556677888998887665
Q ss_pred eeeeccccCCCCCceEEEechHH-----HHHHHhcCC---CCCCCcEEEEeCCC
Q 006122 129 YTIRFEDFTNKDLTAIKFLTDGV-----LLREMMDDP---LLTKYSVIMVDEAH 174 (660)
Q Consensus 129 ~~~~~~~~~~~~~~~I~v~T~~~-----ll~~l~~~~---~l~~~~~iIiDE~H 174 (660)
.....+....- .++|+|+|... |.+.+...+ ..+.+.+.|||||+
T Consensus 154 ~~~~~err~aY-~~DItYgTn~e~gFDyLRDnm~~~~~~~v~r~~~faIVDEvD 206 (870)
T CHL00122 154 GMSSEERKKNY-LKDITYVTNSELGFDYLRDNMALSLSDVVQRPFNYCIIDEVD 206 (870)
T ss_pred CCChHHHHHhc-CCCCEecCCccccccchhhccCcChHHhhccccceeeeecch
Confidence 43333333334 68999999953 334332221 25778899999998
No 142
>KOG0385 consensus Chromatin remodeling complex WSTF-ISWI, small subunit [Transcription]
Probab=99.28 E-value=2.7e-10 Score=122.60 Aligned_cols=320 Identities=22% Similarity=0.202 Sum_probs=183.8
Q ss_pred HHhcCCEEEEEcCCCCcHHHHHHHHH-Hhcc-ccCCCeEEEEeCchHHHHHHHHHHHHHHh-CCeeeeEEeeeeec----
Q 006122 61 LVETHATTIIVGETGSGKTTQIPQYL-KEAG-WADGGRVIACTQPRRLAVQAVASRVAEEM-GVKVGEEVGYTIRF---- 133 (660)
Q Consensus 61 ~l~~~~~vii~apTGsGKT~~ip~~l-~~~~-~~~~~~~i~v~p~r~la~~~~~~~~~~~~-~~~~~~~vg~~~~~---- 133 (660)
....+-+.|+.-..|-|||.|--.++ +-.. ....++-+|++|-.-| ..+...+.+.. +..+...+|.....
T Consensus 182 l~engingILaDEMGLGKTlQtIs~l~yl~~~~~~~GPfLVi~P~StL--~NW~~Ef~rf~P~l~~~~~~Gdk~eR~~~~ 259 (971)
T KOG0385|consen 182 LYENGINGILADEMGLGKTLQTISLLGYLKGRKGIPGPFLVIAPKSTL--DNWMNEFKRFTPSLNVVVYHGDKEERAALR 259 (971)
T ss_pred HHhcCcccEeehhcccchHHHHHHHHHHHHHhcCCCCCeEEEeeHhhH--HHHHHHHHHhCCCcceEEEeCCHHHHHHHH
Confidence 33556679999999999995532222 2222 2234567888876544 34555555554 46666677733111
Q ss_pred cccCCCCCceEEEechHHHHHHHhcCCC-CCCCcEEEEeCCCcCCcChhHHHHHHHHHHHhcCCceEEEeeccc---c--
Q 006122 134 EDFTNKDLTAIKFLTDGVLLREMMDDPL-LTKYSVIMVDEAHERSISTDILLGLLKKIQRCRSDLRLIISSATI---E-- 207 (660)
Q Consensus 134 ~~~~~~~~~~I~v~T~~~ll~~l~~~~~-l~~~~~iIiDE~Her~~~~d~ll~~l~~~~~~~~~~kii~~SAT~---~-- 207 (660)
.+.......+|+++|.++.++.- +.+ --+++++||||+| |..+....+. +.++...-..-++++.|+ |
T Consensus 260 r~~~~~~~fdV~iTsYEi~i~dk--~~lk~~~W~ylvIDEaH-RiKN~~s~L~---~~lr~f~~~nrLLlTGTPLQNNL~ 333 (971)
T KOG0385|consen 260 RDIMLPGRFDVCITSYEIAIKDK--SFLKKFNWRYLVIDEAH-RIKNEKSKLS---KILREFKTDNRLLLTGTPLQNNLH 333 (971)
T ss_pred HHhhccCCCceEeehHHHHHhhH--HHHhcCCceEEEechhh-hhcchhhHHH---HHHHHhcccceeEeeCCcccccHH
Confidence 11112237899999999988751 111 3457999999999 7766654433 222323334456778885 2
Q ss_pred ----------------hHHHHHHhhcCCCCCCCcccc-cCCCCCCeEE-----EECCccccce--EEecCCC--chh---
Q 006122 208 ----------------AKSMSAFFHARKGRRGLEGVE-LVPRLEPAIL-----SVEGRGFNVQ--IHYVEEP--VSD--- 258 (660)
Q Consensus 208 ----------------~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~-----~~~~~~~~v~--~~~~~~~--~~~--- 258 (660)
.+.|..||............. +..-..|..+ .++...-|-+ ..|.... ..+
T Consensus 334 ELWaLLnFllPdiF~~~e~F~swF~~~~~~~~~e~v~~Lh~vL~pFlLRR~K~dVe~sLppKkE~~iyvgms~mQkk~Y~ 413 (971)
T KOG0385|consen 334 ELWALLNFLLPDIFNSAEDFDSWFDFTNCEGDQELVSRLHKVLRPFLLRRIKSDVEKSLPPKKELIIYVGMSSMQKKWYK 413 (971)
T ss_pred HHHHHHHhhchhhccCHHHHHHHHcccccccCHHHHHHHHhhhhHHHHHHHHHhHhhcCCCcceeeEeccchHHHHHHHH
Confidence 345667776532111110000 0000000000 0000000000 0111100 000
Q ss_pred -------------------HHHHH--------------------------------------HHHHHHHHhcCCCCcEEE
Q 006122 259 -------------------YVQAA--------------------------------------VSTVLLIHDKEPPGDILV 281 (660)
Q Consensus 259 -------------------~~~~~--------------------------------------~~~~~~~~~~~~~~~iLV 281 (660)
.+..+ +..++.- ....+.+|||
T Consensus 414 ~iL~kdl~~~n~~~~~~k~kL~NI~mQLRKccnHPYLF~g~ePg~pyttdehLv~nSGKm~vLDkLL~~-Lk~~GhRVLI 492 (971)
T KOG0385|consen 414 AILMKDLDALNGEGKGEKTKLQNIMMQLRKCCNHPYLFDGAEPGPPYTTDEHLVTNSGKMLVLDKLLPK-LKEQGHRVLI 492 (971)
T ss_pred HHHHhcchhhcccccchhhHHHHHHHHHHHhcCCccccCCCCCCCCCCcchHHHhcCcceehHHHHHHH-HHhCCCeEEE
Confidence 00000 0111111 1235667999
Q ss_pred EcCCHHHHHHHHHHHHHHhhhccCCCCCeEEEEccCCCCHHHHhhhcCCCCCC---CcEEEEeCCCcccccCCCCeEEEE
Q 006122 282 FLTGQDDIDATIQLLTEEARTSKKNSSGLIILPLYSGLSRAEQEQVFSPTPRG---KRKVVISTNIAETSLTLEGIVYVV 358 (660)
Q Consensus 282 F~~~~~~i~~l~~~L~~~~~~~~~~~~~~~v~~lh~~l~~~~r~~v~~~f~~g---~~~vlvaT~i~e~Gidip~v~~VI 358 (660)
|..-.... +.|...+ ...++....+.|+++.++|...++.|... +.-.+++|-+.+.|||+-..++||
T Consensus 493 FSQmt~mL----DILeDyc-----~~R~y~ycRiDGSt~~eeR~~aI~~fn~~~s~~FiFlLSTRAGGLGINL~aADtVI 563 (971)
T KOG0385|consen 493 FSQMTRML----DILEDYC-----MLRGYEYCRLDGSTSHEEREDAIEAFNAPPSEKFIFLLSTRAGGLGINLTAADTVI 563 (971)
T ss_pred eHHHHHHH----HHHHHHH-----HhcCceeEeecCCCCcHHHHHHHHhcCCCCcceEEEEEeccccccccccccccEEE
Confidence 96544433 3444433 12378899999999999999999988643 445789999999999999999999
Q ss_pred eCCCccceeecCCCCcccceeeecCHHhHHHhhcccCCCCCcEEEEccChHHhhh
Q 006122 359 DSGFSKQRFYNPISDIENLVVAPISKASARQRAGRAGRVRPGKCYRLYTEEYFVK 413 (660)
Q Consensus 359 d~g~~k~~~~~~~~~~~~l~~~~~s~~~~~QR~GRaGR~~~G~~~~l~~~~~~~~ 413 (660)
- ||+..+ |..--++++|+-|.|..++-++|+|+++...+.
T Consensus 564 l--------yDSDWN-------PQ~DLQAmDRaHRIGQ~K~V~V~RLitentVEe 603 (971)
T KOG0385|consen 564 L--------YDSDWN-------PQVDLQAMDRAHRIGQKKPVVVYRLITENTVEE 603 (971)
T ss_pred E--------ecCCCC-------chhhhHHHHHHHhhCCcCceEEEEEeccchHHH
Confidence 6 666655 666678889999999999999999999876554
No 143
>PRK14873 primosome assembly protein PriA; Provisional
Probab=99.26 E-value=1.4e-10 Score=129.84 Aligned_cols=138 Identities=7% Similarity=0.044 Sum_probs=86.0
Q ss_pred EEEcCCCCcHHHHHHHHHHhccccCCCeEEEEeCchHHHHHHHHHHHHHHhC-CeeeeEEeeeee---cc--ccCCCCCc
Q 006122 69 IIVGETGSGKTTQIPQYLKEAGWADGGRVIACTQPRRLAVQAVASRVAEEMG-VKVGEEVGYTIR---FE--DFTNKDLT 142 (660)
Q Consensus 69 ii~apTGsGKT~~ip~~l~~~~~~~~~~~i~v~p~r~la~~~~~~~~~~~~~-~~~~~~vg~~~~---~~--~~~~~~~~ 142 (660)
+..+-+|||||...-.++... ...++++|+++|..++..| +.+++...++ ..+......... .+ .....+..
T Consensus 164 i~~~~~GSGKTevyl~~i~~~-l~~Gk~vLvLvPEi~lt~q-~~~rl~~~f~~~~v~~lhS~l~~~~R~~~w~~~~~G~~ 241 (665)
T PRK14873 164 VWQALPGEDWARRLAAAAAAT-LRAGRGALVVVPDQRDVDR-LEAALRALLGAGDVAVLSAGLGPADRYRRWLAVLRGQA 241 (665)
T ss_pred HhhcCCCCcHHHHHHHHHHHH-HHcCCeEEEEecchhhHHH-HHHHHHHHcCCCcEEEECCCCCHHHHHHHHHHHhCCCC
Confidence 444556999996665555444 3456779999999988765 5566666676 545444332111 11 11223368
Q ss_pred eEEEechHHHHHHHhcCCCCCCCcEEEEeCCCcCCcChhH----HHHHHHHHHHhcCCceEEEeecccchHHHHHH
Q 006122 143 AIKFLTDGVLLREMMDDPLLTKYSVIMVDEAHERSISTDI----LLGLLKKIQRCRSDLRLIISSATIEAKSMSAF 214 (660)
Q Consensus 143 ~I~v~T~~~ll~~l~~~~~l~~~~~iIiDE~Her~~~~d~----ll~~l~~~~~~~~~~kii~~SAT~~~~~~~~~ 214 (660)
+|+++|-..++-- +.++++|||||-|+-+...+- -.--+..++....+..+|+.|||+..+.+...
T Consensus 242 ~IViGtRSAvFaP------~~~LgLIIvdEEhd~sykq~~~p~yhaRdvA~~Ra~~~~~~lvLgSaTPSles~~~~ 311 (665)
T PRK14873 242 RVVVGTRSAVFAP------VEDLGLVAIWDDGDDLLAEPRAPYPHAREVALLRAHQHGCALLIGGHARTAEAQALV 311 (665)
T ss_pred cEEEEcceeEEec------cCCCCEEEEEcCCchhhcCCCCCCccHHHHHHHHHHHcCCcEEEECCCCCHHHHHHH
Confidence 9999998766432 778999999999954332221 01111222234467899999999988877653
No 144
>PF04851 ResIII: Type III restriction enzyme, res subunit; InterPro: IPR006935 This entry represents a domain found in the N terminus of several proteins, including helicases, the R subunit (HsdR) of type I restriction endonucleases (3.1.21.3 from EC), the Res subunit of type III endonucleases (3.1.21.5 from EC), and the B subunit of excinuclease ABC (uvrB) [, , ].; GO: 0003677 DNA binding, 0005524 ATP binding, 0016787 hydrolase activity; PDB: 2Y3T_B 2W74_B 2FWR_A 2FZ4_A 3UWX_B 3H1T_A 3B6E_A 2FDC_A 1D9Z_A 1T5L_B ....
Probab=99.26 E-value=8.2e-11 Score=112.16 Aligned_cols=148 Identities=18% Similarity=0.126 Sum_probs=88.4
Q ss_pred CCcHHHHHHHHHHHhc-------CCEEEEEcCCCCcHHHHHHHHHHhccccCCCeEEEEeCchHHHHHHHHHHHHHHhCC
Q 006122 49 LPVYKYRTAILYLVET-------HATTIIVGETGSGKTTQIPQYLKEAGWADGGRVIACTQPRRLAVQAVASRVAEEMGV 121 (660)
Q Consensus 49 lPi~~~~~~i~~~l~~-------~~~vii~apTGsGKT~~ip~~l~~~~~~~~~~~i~v~p~r~la~~~~~~~~~~~~~~ 121 (660)
+.++++|.+++..+.. +..+++.+|||||||..+-.++..... ++++++|...+..|.. +.+......
T Consensus 2 ~~lr~~Q~~ai~~i~~~~~~~~~~~~~ll~~~tGsGKT~~~~~~~~~l~~----~~l~~~p~~~l~~Q~~-~~~~~~~~~ 76 (184)
T PF04851_consen 2 YKLRPYQQEAIARIINSLENKKEERRVLLNAPTGSGKTIIALALILELAR----KVLIVAPNISLLEQWY-DEFDDFGSE 76 (184)
T ss_dssp -EE-HHHHHHHHHHHHHHHTTSGCSEEEEEESTTSSHHHHHHHHHHHHHC----EEEEEESSHHHHHHHH-HHHHHHSTT
T ss_pred CCCCHHHHHHHHHHHHHHHhcCCCCCEEEEECCCCCcChhhhhhhhcccc----ceeEecCHHHHHHHHH-HHHHHhhhh
Confidence 3567889888888763 689999999999999666655555432 7888888887766543 333222221
Q ss_pred eeeeEE------------e---eeeeccccCCCCCceEEEechHHHHHHHhcC------------CCCCCCcEEEEeCCC
Q 006122 122 KVGEEV------------G---YTIRFEDFTNKDLTAIKFLTDGVLLREMMDD------------PLLTKYSVIMVDEAH 174 (660)
Q Consensus 122 ~~~~~v------------g---~~~~~~~~~~~~~~~I~v~T~~~ll~~l~~~------------~~l~~~~~iIiDE~H 174 (660)
...... . ..............++.+.|.+.+....... .....+++||+||||
T Consensus 77 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~vI~DEaH 156 (184)
T PF04851_consen 77 KYNFFEKSIKPAYDSKEFISIQDDISDKSESDNNDKDIILTTYQSLQSDIKEEKKIDESARRSYKLLKNKFDLVIIDEAH 156 (184)
T ss_dssp SEEEEE--GGGCCE-SEEETTTTEEEHHHHHCBSS-SEEEEEHHHHHHHHHH---------GCHHGGGGSESEEEEETGG
T ss_pred hhhhcccccccccccccccccccccccccccccccccchhhHHHHHHhhcccccccccchhhhhhhccccCCEEEEehhh
Confidence 111100 0 0001111111226789999999998775431 124567999999999
Q ss_pred cCCcChhHHHHHHHHHHHhcCCceEEEeecccc
Q 006122 175 ERSISTDILLGLLKKIQRCRSDLRLIISSATIE 207 (660)
Q Consensus 175 er~~~~d~ll~~l~~~~~~~~~~kii~~SAT~~ 207 (660)
+ ...... .+.+.. .+...+|+||||+.
T Consensus 157 ~-~~~~~~----~~~i~~-~~~~~~l~lTATp~ 183 (184)
T PF04851_consen 157 H-YPSDSS----YREIIE-FKAAFILGLTATPF 183 (184)
T ss_dssp C-THHHHH----HHHHHH-SSCCEEEEEESS-S
T ss_pred h-cCCHHH----HHHHHc-CCCCeEEEEEeCcc
Confidence 4 322221 233333 56788999999973
No 145
>TIGR03117 cas_csf4 CRISPR-associated DEAD/DEAH-box helicase Csf4. Members of this family show up near CRISPR repeats in Acidithiobacillus ferrooxidans ATCC 23270, Azoarcus sp. EbN1, and Rhodoferax ferrireducens DSM 15236. In the latter two species, the CRISPR/cas locus is found on a plasmid. This family is one of several characteristic of a type of CRISPR-associated (cas) gene cluster we designate Aferr after A. ferrooxidans, where it is both chromosomal and the only type of cas gene cluster found. The gene is designated csf4 (CRISPR/cas Subtype as in A. ferrooxidans protein 1), as it lies farthest (fourth closest) from the repeats in the A. ferrooxidans genome.
Probab=99.19 E-value=2.3e-08 Score=110.87 Aligned_cols=137 Identities=18% Similarity=0.089 Sum_probs=87.3
Q ss_pred HHHHHHHHHHHHHhcCCCCcEEEEcCCHHHHHHHHHHHHHHhhhccCCCCCeEEEEccCCCCHHHHhhhcCCCCC----C
Q 006122 259 YVQAAVSTVLLIHDKEPPGDILVFLTGQDDIDATIQLLTEEARTSKKNSSGLIILPLYSGLSRAEQEQVFSPTPR----G 334 (660)
Q Consensus 259 ~~~~~~~~~~~~~~~~~~~~iLVF~~~~~~i~~l~~~L~~~~~~~~~~~~~~~v~~lh~~l~~~~r~~v~~~f~~----g 334 (660)
+.+.....+..+... .+|.+||.+++...++.+++.|...+ .+.+ ...|..+ .+...++.|++ |
T Consensus 454 ~~~~~~~~~~~~~~~-~~G~~lvLfTS~~~~~~~~~~l~~~l--------~~~~-l~qg~~~--~~~~l~~~f~~~~~~~ 521 (636)
T TIGR03117 454 WLENVSLSTAAILRK-AQGGTLVLTTAFSHISAIGQLVELGI--------PAEI-VIQSEKN--RLASAEQQFLALYANG 521 (636)
T ss_pred HHHHHHHHHHHHHHH-cCCCEEEEechHHHHHHHHHHHHhhc--------CCCE-EEeCCCc--cHHHHHHHHHHhhcCC
Confidence 555566666666554 56789999999999999999997653 2333 3445442 22334555554 5
Q ss_pred CcEEEEeCCCcccccCC----------CCeEEEEeCCCccceeecCC--------CCcccceeeecCHHhHHHhhcccCC
Q 006122 335 KRKVVISTNIAETSLTL----------EGIVYVVDSGFSKQRFYNPI--------SDIENLVVAPISKASARQRAGRAGR 396 (660)
Q Consensus 335 ~~~vlvaT~i~e~Gidi----------p~v~~VId~g~~k~~~~~~~--------~~~~~l~~~~~s~~~~~QR~GRaGR 396 (660)
...||++|+.+.+|||+ +.++.||-.-+.-.. -||- .|-..+...|-..-.+.|-+||.=|
T Consensus 522 ~~~vL~gt~sfweGvDv~~~~~~p~~G~~Ls~ViI~kLPF~~-~dp~a~~~~~~~~g~~~f~~~p~a~i~lkQg~GRLIR 600 (636)
T TIGR03117 522 IQPVLIAAGGAWTGIDLTHKPVSPDKDNLLTDLIITCAPFGL-NRSLSMLKRIRKTSVRPWEIINESLMMLRQGLGRLVR 600 (636)
T ss_pred CCcEEEeCCccccccccCCccCCCCCCCcccEEEEEeCCCCc-CChHHHHHHHHhcCCChHhhhHHHHHHHHHhcCceee
Confidence 78999999999999999 347777654443221 1221 1222222235556778899999988
Q ss_pred C--C--CcEEEEccCh
Q 006122 397 V--R--PGKCYRLYTE 408 (660)
Q Consensus 397 ~--~--~G~~~~l~~~ 408 (660)
. . .|....|=++
T Consensus 601 ~~~D~~~G~i~ilD~R 616 (636)
T TIGR03117 601 HPDMPQNRRIHMLDGR 616 (636)
T ss_pred cCCCcCceEEEEEeCC
Confidence 7 3 5766555443
No 146
>PRK12902 secA preprotein translocase subunit SecA; Reviewed
Probab=99.19 E-value=2.4e-09 Score=119.60 Aligned_cols=124 Identities=23% Similarity=0.257 Sum_probs=82.4
Q ss_pred cCCCcHHHHHHHHHHHhcCCEEEEEcCCCCcHHHH--HHHHHHhccccCCCeEEEEeCchHHHHH--HHHHHHHHHhCCe
Q 006122 47 QRLPVYKYRTAILYLVETHATTIIVGETGSGKTTQ--IPQYLKEAGWADGGRVIACTQPRRLAVQ--AVASRVAEEMGVK 122 (660)
Q Consensus 47 ~~lPi~~~~~~i~~~l~~~~~vii~apTGsGKT~~--ip~~l~~~~~~~~~~~i~v~p~r~la~~--~~~~~~~~~~~~~ 122 (660)
+.+-...+--+++-++.=++--|....||-|||.. +|.++.. . .+..+-++|...-||.. .+...+-+.+|..
T Consensus 80 R~lG~r~ydVQliGgl~Lh~G~IAEM~TGEGKTL~atlpaylnA--L-~GkgVhVVTvNdYLA~RDae~m~~vy~~LGLt 156 (939)
T PRK12902 80 RVLGMRHFDVQLIGGMVLHEGQIAEMKTGEGKTLVATLPSYLNA--L-TGKGVHVVTVNDYLARRDAEWMGQVHRFLGLS 156 (939)
T ss_pred HHhCCCcchhHHHhhhhhcCCceeeecCCCChhHHHHHHHHHHh--h-cCCCeEEEeCCHHHHHhHHHHHHHHHHHhCCe
Confidence 34444444445665554455569999999999943 3444432 2 45568889999888877 5555677888998
Q ss_pred eeeEEeeeeeccccCCCCCceEEEechHHH-----HHHHhcC---CCCCCCcEEEEeCCC
Q 006122 123 VGEEVGYTIRFEDFTNKDLTAIKFLTDGVL-----LREMMDD---PLLTKYSVIMVDEAH 174 (660)
Q Consensus 123 ~~~~vg~~~~~~~~~~~~~~~I~v~T~~~l-----l~~l~~~---~~l~~~~~iIiDE~H 174 (660)
+|...+.....+.+..- .++|+|+|...+ .+.+..+ ...+.+.+.|||||+
T Consensus 157 vg~i~~~~~~~err~aY-~~DItYgTn~e~gFDYLRDnm~~~~~~~vqR~~~faIVDEvD 215 (939)
T PRK12902 157 VGLIQQDMSPEERKKNY-ACDITYATNSELGFDYLRDNMATDISEVVQRPFNYCVIDEVD 215 (939)
T ss_pred EEEECCCCChHHHHHhc-CCCeEEecCCcccccchhhhhcccccccccCccceEEEeccc
Confidence 88765533333333334 799999999765 4444332 236788999999998
No 147
>PRK11747 dinG ATP-dependent DNA helicase DinG; Provisional
Probab=99.14 E-value=7.1e-09 Score=118.34 Aligned_cols=135 Identities=15% Similarity=0.207 Sum_probs=87.5
Q ss_pred hhHHHHHHHHHHHHHhcCCCCcEEEEcCCHHHHHHHHHHHHHHhhhccCCCCCeEEEEccCCCCHHHHhhhcCCC----C
Q 006122 257 SDYVQAAVSTVLLIHDKEPPGDILVFLTGQDDIDATIQLLTEEARTSKKNSSGLIILPLYSGLSRAEQEQVFSPT----P 332 (660)
Q Consensus 257 ~~~~~~~~~~~~~~~~~~~~~~iLVF~~~~~~i~~l~~~L~~~~~~~~~~~~~~~v~~lh~~l~~~~r~~v~~~f----~ 332 (660)
.++.+.....+..+.. .+|.+|||++|.+..+.+++.|.... +..+. .++.. .+.++++.| .
T Consensus 517 ~~~~~~~~~~i~~l~~--~~gg~LVlFtSy~~l~~v~~~l~~~~--------~~~ll-~Q~~~---~~~~ll~~f~~~~~ 582 (697)
T PRK11747 517 EAHTAEMAEFLPELLE--KHKGSLVLFASRRQMQKVADLLPRDL--------RLMLL-VQGDQ---PRQRLLEKHKKRVD 582 (697)
T ss_pred HHHHHHHHHHHHHHHh--cCCCEEEEeCcHHHHHHHHHHHHHhc--------CCcEE-EeCCc---hHHHHHHHHHHHhc
Confidence 4566777777777776 34458999999999999999987542 22333 24442 345555444 4
Q ss_pred CCCcEEEEeCCCcccccCCCC--eEEEEeCCCccceeecCC----------CCcccc--eeeecCHHhHHHhhcccCCC-
Q 006122 333 RGKRKVVISTNIAETSLTLEG--IVYVVDSGFSKQRFYNPI----------SDIENL--VVAPISKASARQRAGRAGRV- 397 (660)
Q Consensus 333 ~g~~~vlvaT~i~e~Gidip~--v~~VId~g~~k~~~~~~~----------~~~~~l--~~~~~s~~~~~QR~GRaGR~- 397 (660)
.|...|+++|..+.+|||+|+ .+.||-.++.-..--||. .|-+.+ ...|.....+.|-+||.=|.
T Consensus 583 ~~~~~VL~g~~sf~EGVD~pGd~l~~vII~kLPF~~p~dp~~~ar~~~~~~~g~~~F~~~~lP~A~~kl~Qg~GRlIRs~ 662 (697)
T PRK11747 583 EGEGSVLFGLQSFAEGLDLPGDYLTQVIITKIPFAVPDSPVEATLAEWLKSRGGNPFMEISVPDASFKLIQAVGRLIRSE 662 (697)
T ss_pred cCCCeEEEEeccccccccCCCCceEEEEEEcCCCCCCCCHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHhccccccC
Confidence 577889999999999999987 788887776532111110 011111 11244555688999999887
Q ss_pred -CCcEEEEc
Q 006122 398 -RPGKCYRL 405 (660)
Q Consensus 398 -~~G~~~~l 405 (660)
..|..+.+
T Consensus 663 ~D~G~i~il 671 (697)
T PRK11747 663 QDRGRVTIL 671 (697)
T ss_pred CceEEEEEE
Confidence 55665544
No 148
>PF02399 Herpes_ori_bp: Origin of replication binding protein; InterPro: IPR003450 This entry represents replication origin binding protein. It functions as a docking protein to recruit essential components of the viral replication machinery to viral DNA origins. In the presence of the major DNA-binding protein, it opens dsDNA which leads to a conformational change in the origin that facilitates DNA unwinding and subsequent replication [].; GO: 0003688 DNA replication origin binding, 0005524 ATP binding, 0006260 DNA replication
Probab=99.09 E-value=1.1e-08 Score=113.35 Aligned_cols=308 Identities=18% Similarity=0.188 Sum_probs=162.6
Q ss_pred hcCCEEEEEcCCCCcHHHHHHHHHHhccccCCCeEEEEeCchHHHHHHHHHHHHHHhCCeeeeEEeeeeeccccCCCCCc
Q 006122 63 ETHATTIIVGETGSGKTTQIPQYLKEAGWADGGRVIACTQPRRLAVQAVASRVAEEMGVKVGEEVGYTIRFEDFTNKDLT 142 (660)
Q Consensus 63 ~~~~~vii~apTGsGKT~~ip~~l~~~~~~~~~~~i~v~p~r~la~~~~~~~~~~~~~~~~~~~vg~~~~~~~~~~~~~~ 142 (660)
....+.+|.+|.|||||+.+-.++.+....+..++++++.-+.++ .+++.++.... . ...+-|....+........
T Consensus 47 ~~~~V~vVRSpMGTGKTtaLi~wLk~~l~~~~~~VLvVShRrSL~-~sL~~rf~~~~-l--~gFv~Y~d~~~~~i~~~~~ 122 (824)
T PF02399_consen 47 QKRGVLVVRSPMGTGKTTALIRWLKDALKNPDKSVLVVSHRRSLT-KSLAERFKKAG-L--SGFVNYLDSDDYIIDGRPY 122 (824)
T ss_pred CCCCeEEEECCCCCCcHHHHHHHHHHhccCCCCeEEEEEhHHHHH-HHHHHHHhhcC-C--Ccceeeecccccccccccc
Confidence 456789999999999999887788776434556677777655554 45566554331 1 1122222211111111124
Q ss_pred eEEEechHHHHHHHhcCCCCCCCcEEEEeCCCcCC--cCh------hHHHHHHHHHHHhcCCceEEEeecccchHHHHHH
Q 006122 143 AIKFLTDGVLLREMMDDPLLTKYSVIMVDEAHERS--IST------DILLGLLKKIQRCRSDLRLIISSATIEAKSMSAF 214 (660)
Q Consensus 143 ~I~v~T~~~ll~~l~~~~~l~~~~~iIiDE~Her~--~~~------d~ll~~l~~~~~~~~~~kii~~SAT~~~~~~~~~ 214 (660)
+-+++.-+.|.+.. ...+.++++|||||+-.-. +.. .....+++.+.+ ...++|+|-||++.. .-+|
T Consensus 123 ~rLivqIdSL~R~~--~~~l~~yDvVIIDEv~svL~qL~S~Tm~~~~~v~~~L~~lI~--~ak~VI~~DA~ln~~-tvdF 197 (824)
T PF02399_consen 123 DRLIVQIDSLHRLD--GSLLDRYDVVIIDEVMSVLNQLFSPTMRQREEVDNLLKELIR--NAKTVIVMDADLNDQ-TVDF 197 (824)
T ss_pred CeEEEEehhhhhcc--cccccccCEEEEehHHHHHHHHhHHHHhhHHHHHHHHHHHHH--hCCeEEEecCCCCHH-HHHH
Confidence 55666677776652 3458889999999987100 111 122223333333 345799999999654 2333
Q ss_pred hhcCCCCCCCccccc------CCCCCCeEEEECCc------------cccceE-----------EecCCCchhHHHHHHH
Q 006122 215 FHARKGRRGLEGVEL------VPRLEPAILSVEGR------------GFNVQI-----------HYVEEPVSDYVQAAVS 265 (660)
Q Consensus 215 ~~~~~~~~~~~~~~~------~~~~~~~~~~~~~~------------~~~v~~-----------~~~~~~~~~~~~~~~~ 265 (660)
+.............+ .......+...-|. ..+... .-.......+......
T Consensus 198 l~~~Rp~~~i~vI~n~y~~~~fs~R~~~~~~~l~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~tF~~~L~~ 277 (824)
T PF02399_consen 198 LASCRPDENIHVIVNTYASPGFSNRRCTFLRSLGTDTLAAALNPEDENADTSPTPKHSPDPTATAAISNDETTFFSELLA 277 (824)
T ss_pred HHHhCCCCcEEEEEeeeecCCcccceEEEecccCcHHHHHHhCCcccccccCCCcCCCCccccccccccchhhHHHHHHH
Confidence 333221111110000 00000000000000 000000 0000000111222222
Q ss_pred HHHHHHhcCCCCcEEEEcCCHHHHHHHHHHHHHHhhhccCCCCCeEEEEccCCCCHHHHhhhcCCCCCCCcEEEEeCCCc
Q 006122 266 TVLLIHDKEPPGDILVFLTGQDDIDATIQLLTEEARTSKKNSSGLIILPLYSGLSRAEQEQVFSPTPRGKRKVVISTNIA 345 (660)
Q Consensus 266 ~~~~~~~~~~~~~iLVF~~~~~~i~~l~~~L~~~~~~~~~~~~~~~v~~lh~~l~~~~r~~v~~~f~~g~~~vlvaT~i~ 345 (660)
.+ ..+.+|-||++|....+.+++..... ...|..+.|.-+.+ .+. . =++.+|++=|++.
T Consensus 278 ~L------~~gknIcvfsSt~~~~~~v~~~~~~~---------~~~Vl~l~s~~~~~---dv~-~--W~~~~VviYT~~i 336 (824)
T PF02399_consen 278 RL------NAGKNICVFSSTVSFAEIVARFCARF---------TKKVLVLNSTDKLE---DVE-S--WKKYDVVIYTPVI 336 (824)
T ss_pred HH------hCCCcEEEEeChHHHHHHHHHHHHhc---------CCeEEEEcCCCCcc---ccc-c--ccceeEEEEeceE
Confidence 22 35667899999999888888877654 66788888765544 222 2 2468999999999
Q ss_pred ccccCCCCeEEEEeCCCccceeecCCCCcccceeeecCHHhHHHhhcccCCCCCcEEEEccChHHhh
Q 006122 346 ETSLTLEGIVYVVDSGFSKQRFYNPISDIENLVVAPISKASARQRAGRAGRVRPGKCYRLYTEEYFV 412 (660)
Q Consensus 346 e~Gidip~v~~VId~g~~k~~~~~~~~~~~~l~~~~~s~~~~~QR~GRaGR~~~G~~~~l~~~~~~~ 412 (660)
..|+++....+=--+++.| +... -.+..+..|+.||+-.......|..++.....
T Consensus 337 tvG~Sf~~~HF~~~f~yvk-----~~~~-------gpd~~s~~Q~lgRvR~l~~~ei~v~~d~~~~~ 391 (824)
T PF02399_consen 337 TVGLSFEEKHFDSMFAYVK-----PMSY-------GPDMVSVYQMLGRVRSLLDNEIYVYIDASGAR 391 (824)
T ss_pred EEEeccchhhceEEEEEec-----CCCC-------CCcHHHHHHHHHHHHhhccCeEEEEEeccccc
Confidence 9999987543211111111 1110 23455678999999777777777776655433
No 149
>KOG0384 consensus Chromodomain-helicase DNA-binding protein [Transcription]
Probab=99.08 E-value=4.3e-09 Score=118.81 Aligned_cols=116 Identities=19% Similarity=0.208 Sum_probs=93.8
Q ss_pred CCCCcEEEEcCCHHHHHHHHHHHHHHhhhccCCCCCeEEEEccCCCCHHHHhhhcCCCCC---CCcEEEEeCCCcccccC
Q 006122 274 EPPGDILVFLTGQDDIDATIQLLTEEARTSKKNSSGLIILPLYSGLSRAEQEQVFSPTPR---GKRKVVISTNIAETSLT 350 (660)
Q Consensus 274 ~~~~~iLVF~~~~~~i~~l~~~L~~~~~~~~~~~~~~~v~~lh~~l~~~~r~~v~~~f~~---g~~~vlvaT~i~e~Gid 350 (660)
..+.+||||..-.....-++++|... ++....+.|++..+-|+..+..|.. ...-.|+||-+.+.|||
T Consensus 697 ~~GHrVLIFSQMVRmLDIL~eYL~~r---------~ypfQRLDGsvrgelRq~AIDhFnap~SddFvFLLSTRAGGLGIN 767 (1373)
T KOG0384|consen 697 EGGHRVLIFSQMVRMLDILAEYLSLR---------GYPFQRLDGSVRGELRQQAIDHFNAPDSDDFVFLLSTRAGGLGIN 767 (1373)
T ss_pred cCCceEEEhHHHHHHHHHHHHHHHHc---------CCcceeccCCcchHHHHHHHHhccCCCCCceEEEEecccCccccc
Confidence 45678999998888888888888776 7888999999999999999988853 24568999999999999
Q ss_pred CCCeEEEEeCCCccceeecCCCCcccceeeecCHHhHHHhhcccCCCCCcEEEEccChHHhhh
Q 006122 351 LEGIVYVVDSGFSKQRFYNPISDIENLVVAPISKASARQRAGRAGRVRPGKCYRLYTEEYFVK 413 (660)
Q Consensus 351 ip~v~~VId~g~~k~~~~~~~~~~~~l~~~~~s~~~~~QR~GRaGR~~~G~~~~l~~~~~~~~ 413 (660)
+-..+.||- ||+..+ |..--+++=|+-|.|-...-.+|||+|+..++.
T Consensus 768 LatADTVII--------FDSDWN-------PQNDLQAqARaHRIGQkk~VnVYRLVTk~TvEe 815 (1373)
T KOG0384|consen 768 LATADTVII--------FDSDWN-------PQNDLQAQARAHRIGQKKHVNVYRLVTKNTVEE 815 (1373)
T ss_pred ccccceEEE--------eCCCCC-------cchHHHHHHHHHhhcccceEEEEEEecCCchHH
Confidence 999998886 665555 334445555666666667778999999998887
No 150
>COG1199 DinG Rad3-related DNA helicases [Transcription / DNA replication, recombination, and repair]
Probab=98.99 E-value=7.3e-08 Score=110.70 Aligned_cols=136 Identities=15% Similarity=0.129 Sum_probs=90.7
Q ss_pred hHHHHHHHHHHHHHhcCCCCcEEEEcCCHHHHHHHHHHHHHHhhhccCCCCCeEEEEccCCCCHHHHhhhcCCCCCCCc-
Q 006122 258 DYVQAAVSTVLLIHDKEPPGDILVFLTGQDDIDATIQLLTEEARTSKKNSSGLIILPLYSGLSRAEQEQVFSPTPRGKR- 336 (660)
Q Consensus 258 ~~~~~~~~~~~~~~~~~~~~~iLVF~~~~~~i~~l~~~L~~~~~~~~~~~~~~~v~~lh~~l~~~~r~~v~~~f~~g~~- 336 (660)
.+.......+..+... .++++|||+||.+..+.+++.+.... .......+|..+.+ ..++.|..+.-
T Consensus 462 ~~~~~~~~~i~~~~~~-~~~~~lvlF~Sy~~l~~~~~~~~~~~--------~~~~v~~q~~~~~~---~~l~~f~~~~~~ 529 (654)
T COG1199 462 ELLAKLAAYLREILKA-SPGGVLVLFPSYEYLKRVAERLKDER--------STLPVLTQGEDERE---ELLEKFKASGEG 529 (654)
T ss_pred HHHHHHHHHHHHHHhh-cCCCEEEEeccHHHHHHHHHHHhhcC--------ccceeeecCCCcHH---HHHHHHHHhcCC
Confidence 5666666666666665 44589999999999999999987652 11344556665554 44555544433
Q ss_pred EEEEeCCCcccccCCCCe--EEEEeCCCcccee----------ecCCCC--cccceeeecCHHhHHHhhcccCCC--CCc
Q 006122 337 KVVISTNIAETSLTLEGI--VYVVDSGFSKQRF----------YNPISD--IENLVVAPISKASARQRAGRAGRV--RPG 400 (660)
Q Consensus 337 ~vlvaT~i~e~Gidip~v--~~VId~g~~k~~~----------~~~~~~--~~~l~~~~~s~~~~~QR~GRaGR~--~~G 400 (660)
-++|+|..+.+|||+|+= +.||-.|+.-..- |....| .......|.....+.|-+||+=|. ..|
T Consensus 530 ~~lv~~gsf~EGVD~~g~~l~~vvI~~lPfp~p~dp~~~~r~~~~~~~g~~~f~~~~l~~A~~~l~QavGRlIR~~~D~G 609 (654)
T COG1199 530 LILVGGGSFWEGVDFPGDALRLVVIVGLPFPNPDDPLLKARLEFLKRLGGDPFEEFYLPPAVIKLRQAVGRLIRSEDDRG 609 (654)
T ss_pred eEEEeeccccCcccCCCCCeeEEEEEecCCCCCCCHHHHHHHHHHHHhcCCCceEeehHHHHHHHHHhhccccccCCCce
Confidence 899999999999999864 5666666643221 222221 122334477788899999999998 456
Q ss_pred EEEEc
Q 006122 401 KCYRL 405 (660)
Q Consensus 401 ~~~~l 405 (660)
.++.+
T Consensus 610 ~ivll 614 (654)
T COG1199 610 VIVLL 614 (654)
T ss_pred EEEEe
Confidence 66655
No 151
>KOG0387 consensus Transcription-coupled repair protein CSB/RAD26 (contains SNF2 family DNA-dependent ATPase domain) [Transcription; Replication, recombination and repair]
Probab=98.98 E-value=8.5e-08 Score=104.23 Aligned_cols=116 Identities=21% Similarity=0.304 Sum_probs=93.8
Q ss_pred CCCcEEEEcCCHHHHHHHHHHHHHHhhhccCCCCCeEEEEccCCCCHHHHhhhcCCCCCCCc--EEEEeCCCcccccCCC
Q 006122 275 PPGDILVFLTGQDDIDATIQLLTEEARTSKKNSSGLIILPLYSGLSRAEQEQVFSPTPRGKR--KVVISTNIAETSLTLE 352 (660)
Q Consensus 275 ~~~~iLVF~~~~~~i~~l~~~L~~~~~~~~~~~~~~~v~~lh~~l~~~~r~~v~~~f~~g~~--~vlvaT~i~e~Gidip 352 (660)
.+..+|+|..++....-+...|... .++..+.+.|..+...|..+++.|.++.- -.|++|-+.+.|+|+-
T Consensus 545 qg~rvllFsqs~~mLdilE~fL~~~--------~~ysylRmDGtT~~~~R~~lVd~Fne~~s~~VFLLTTrvGGLGlNLT 616 (923)
T KOG0387|consen 545 QGDRVLLFSQSRQMLDILESFLRRA--------KGYSYLRMDGTTPAALRQKLVDRFNEDESIFVFLLTTRVGGLGLNLT 616 (923)
T ss_pred CCCEEEEehhHHHHHHHHHHHHHhc--------CCceEEEecCCCccchhhHHHHhhcCCCceEEEEEEecccccccccc
Confidence 3457999999999888777777642 38899999999999999999999987753 3578899999999999
Q ss_pred CeEEEEeCCCccceeecCCCCcccceeeecCHHhHHHhhcccCCCCCcEEEEccChHHhhh
Q 006122 353 GIVYVVDSGFSKQRFYNPISDIENLVVAPISKASARQRAGRAGRVRPGKCYRLYTEEYFVK 413 (660)
Q Consensus 353 ~v~~VId~g~~k~~~~~~~~~~~~l~~~~~s~~~~~QR~GRaGR~~~G~~~~l~~~~~~~~ 413 (660)
+.+-||- |||..+ |..-.++.-|+=|-|-.+.-.+|||.+....+.
T Consensus 617 gAnRVII--------fDPdWN-------PStD~QAreRawRiGQkkdV~VYRL~t~gTIEE 662 (923)
T KOG0387|consen 617 GANRVII--------FDPDWN-------PSTDNQARERAWRIGQKKDVVVYRLMTAGTIEE 662 (923)
T ss_pred cCceEEE--------ECCCCC-------CccchHHHHHHHhhcCccceEEEEEecCCcHHH
Confidence 8888775 888776 555667777777888878889999998665543
No 152
>COG4889 Predicted helicase [General function prediction only]
Probab=98.93 E-value=1.1e-09 Score=118.98 Aligned_cols=108 Identities=16% Similarity=0.187 Sum_probs=76.7
Q ss_pred cEEEEcCCHHHHHHHHHHHHHHhh----hccCCCCCeE--EEEccCCCCHHHHhhhcC---CCCCCCcEEEEeCCCcccc
Q 006122 278 DILVFLTGQDDIDATIQLLTEEAR----TSKKNSSGLI--ILPLYSGLSRAEQEQVFS---PTPRGKRKVVISTNIAETS 348 (660)
Q Consensus 278 ~iLVF~~~~~~i~~l~~~L~~~~~----~~~~~~~~~~--v~~lh~~l~~~~r~~v~~---~f~~g~~~vlvaT~i~e~G 348 (660)
..+-||.+.++-..+++.+..... ++..+..++. +-...|.|...+|.+.++ .|...+.|||-.--.+..|
T Consensus 462 RAIaF~k~I~tSK~i~~sFe~Vve~Y~~Elk~d~~nL~iSi~HvDGtmNal~R~~l~~l~~~~~~neckIlSNaRcLSEG 541 (1518)
T COG4889 462 RAIAFAKDIKTSKQIAESFETVVEAYDEELKKDFKNLKISIDHVDGTMNALERLDLLELKNTFEPNECKILSNARCLSEG 541 (1518)
T ss_pred HHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHhcCCCceEEeecccccccHHHHHHHHhccCCCCcchheeeccchhhhcC
Confidence 467788887777666666544322 1222223444 444558898888865543 5677899999999999999
Q ss_pred cCCCCeEEEEeCCCccceeecCCCCcccceeeecCHHhHHHhhcccCCCCCcEEE
Q 006122 349 LTLEGIVYVVDSGFSKQRFYNPISDIENLVVAPISKASARQRAGRAGRVRPGKCY 403 (660)
Q Consensus 349 idip~v~~VId~g~~k~~~~~~~~~~~~l~~~~~s~~~~~QR~GRaGR~~~G~~~ 403 (660)
||+|..+-||. |||+.. ..+.+|-+||+.|..+|+-|
T Consensus 542 VDVPaLDsViF--------f~pr~s----------mVDIVQaVGRVMRKa~gK~y 578 (1518)
T COG4889 542 VDVPALDSVIF--------FDPRSS----------MVDIVQAVGRVMRKAKGKKY 578 (1518)
T ss_pred CCccccceEEE--------ecCchh----------HHHHHHHHHHHHHhCcCCcc
Confidence 99999999997 676654 44556999999999777643
No 153
>PRK12901 secA preprotein translocase subunit SecA; Reviewed
Probab=98.92 E-value=7.1e-08 Score=109.16 Aligned_cols=117 Identities=22% Similarity=0.235 Sum_probs=81.3
Q ss_pred HHHHHHHHHHHHhcCCCCcEEEEcCCHHHHHHHHHHHHHHhhhccCCCCCeEEEEccCCCCHHHHhhhcCCCCCCCcEEE
Q 006122 260 VQAAVSTVLLIHDKEPPGDILVFLTGQDDIDATIQLLTEEARTSKKNSSGLIILPLYSGLSRAEQEQVFSPTPRGKRKVV 339 (660)
Q Consensus 260 ~~~~~~~~~~~~~~~~~~~iLVF~~~~~~i~~l~~~L~~~~~~~~~~~~~~~v~~lh~~l~~~~r~~v~~~f~~g~~~vl 339 (660)
....+..+...+. .+.+|||-+.|.+..+.+++.|... ++.--.+++.....|-.-|-++-. .-.|-
T Consensus 614 ~~Aii~ei~~~~~--~GrPVLVGT~SVe~SE~lS~~L~~~---------gI~H~VLNAK~h~~EAeIVA~AG~--~GaVT 680 (1112)
T PRK12901 614 YNAVIEEITELSE--AGRPVLVGTTSVEISELLSRMLKMR---------KIPHNVLNAKLHQKEAEIVAEAGQ--PGTVT 680 (1112)
T ss_pred HHHHHHHHHHHHH--CCCCEEEEeCcHHHHHHHHHHHHHc---------CCcHHHhhccchhhHHHHHHhcCC--CCcEE
Confidence 3456666666664 5677999999999999999999876 444444555544445444444433 34689
Q ss_pred EeCCCcccccCCC--------CeEEEEeCCCccceeecCCCCcccceeeecCHHhHHHhhcccCCC-CCcEEEEccC
Q 006122 340 ISTNIAETSLTLE--------GIVYVVDSGFSKQRFYNPISDIENLVVAPISKASARQRAGRAGRV-RPGKCYRLYT 407 (660)
Q Consensus 340 vaT~i~e~Gidip--------~v~~VId~g~~k~~~~~~~~~~~~l~~~~~s~~~~~QR~GRaGR~-~~G~~~~l~~ 407 (660)
||||+|++|-||. +=-+||-+.. +-|..-=.|-.|||||. .||.+-.+++
T Consensus 681 IATNMAGRGTDIkLg~~V~e~GGL~VIgTer------------------heSrRID~QLrGRaGRQGDPGsS~f~lS 739 (1112)
T PRK12901 681 IATNMAGRGTDIKLSPEVKAAGGLAIIGTER------------------HESRRVDRQLRGRAGRQGDPGSSQFYVS 739 (1112)
T ss_pred EeccCcCCCcCcccchhhHHcCCCEEEEccC------------------CCcHHHHHHHhcccccCCCCCcceEEEE
Confidence 9999999999986 2235554433 56666677999999999 8886544443
No 154
>KOG0390 consensus DNA repair protein, SNF2 family [Replication, recombination and repair]
Probab=98.71 E-value=2.4e-06 Score=95.33 Aligned_cols=106 Identities=17% Similarity=0.187 Sum_probs=73.5
Q ss_pred EcCCHHHHHHHHHHHHHHhhhccCCCCCeEEEEccCCCCHHHHhhhcCCCCCC--C-cEEEEeCCCcccccCCCCeEEEE
Q 006122 282 FLTGQDDIDATIQLLTEEARTSKKNSSGLIILPLYSGLSRAEQEQVFSPTPRG--K-RKVVISTNIAETSLTLEGIVYVV 358 (660)
Q Consensus 282 F~~~~~~i~~l~~~L~~~~~~~~~~~~~~~v~~lh~~l~~~~r~~v~~~f~~g--~-~~vlvaT~i~e~Gidip~v~~VI 358 (660)
++.....+.++.+.+.+. .++.++.+||.++..+|+.+++.|.+. . .-.+.+|-+.+.||++=+...||
T Consensus 600 ~Isny~~tldl~e~~~~~--------~g~~~~rLdG~~~~~qRq~~vd~FN~p~~~~~vfLlSsKAgg~GinLiGAsRli 671 (776)
T KOG0390|consen 600 LISNYTQTLDLFEQLCRW--------RGYEVLRLDGKTSIKQRQKLVDTFNDPESPSFVFLLSSKAGGEGLNLIGASRLI 671 (776)
T ss_pred EeccHHHHHHHHHHHHhh--------cCceEEEEcCCCchHHHHHHHHhccCCCCCceEEEEecccccCceeecccceEE
Confidence 334444445555555444 288999999999999999999999643 3 33566777888999998888887
Q ss_pred eCCCccceeecCCCCcccceeeecCHHhHHHhhcccCCC---CCcEEEEccChHHhhh
Q 006122 359 DSGFSKQRFYNPISDIENLVVAPISKASARQRAGRAGRV---RPGKCYRLYTEEYFVK 413 (660)
Q Consensus 359 d~g~~k~~~~~~~~~~~~l~~~~~s~~~~~QR~GRaGR~---~~G~~~~l~~~~~~~~ 413 (660)
- ||+..+.. -- .|-++||=|. ++-..|+|++....+.
T Consensus 672 l--------~D~dWNPa-------~d---~QAmaR~~RdGQKk~v~iYrLlatGtiEE 711 (776)
T KOG0390|consen 672 L--------FDPDWNPA-------VD---QQAMARAWRDGQKKPVYIYRLLATGTIEE 711 (776)
T ss_pred E--------eCCCCCch-------hH---HHHHHHhccCCCcceEEEEEeecCCCchH
Confidence 6 66665532 22 3666666665 7788899998655443
No 155
>KOG1000 consensus Chromatin remodeling protein HARP/SMARCAL1, DEAD-box superfamily [Chromatin structure and dynamics]
Probab=98.69 E-value=9.3e-07 Score=91.38 Aligned_cols=80 Identities=19% Similarity=0.199 Sum_probs=65.3
Q ss_pred CCCCcEEEEcCCHHHHHHHHHHHHHHhhhccCCCCCeEEEEccCCCCHHHHhhhcCCCCCC-CcE-EEEeCCCcccccCC
Q 006122 274 EPPGDILVFLTGQDDIDATIQLLTEEARTSKKNSSGLIILPLYSGLSRAEQEQVFSPTPRG-KRK-VVISTNIAETSLTL 351 (660)
Q Consensus 274 ~~~~~iLVF~~~~~~i~~l~~~L~~~~~~~~~~~~~~~v~~lh~~l~~~~r~~v~~~f~~g-~~~-vlvaT~i~e~Gidi 351 (660)
.++.+.+||+--..-.+.+...+.+. ++....+.|..++.+|....+.|... +.+ -|++-..+..|+|+
T Consensus 490 ~~~~KflVFaHH~~vLd~Iq~~~~~r---------~vg~IRIDGst~s~~R~ll~qsFQ~seev~VAvlsItA~gvGLt~ 560 (689)
T KOG1000|consen 490 APPRKFLVFAHHQIVLDTIQVEVNKR---------KVGSIRIDGSTPSHRRTLLCQSFQTSEEVRVAVLSITAAGVGLTL 560 (689)
T ss_pred CCCceEEEEehhHHHHHHHHHHHHHc---------CCCeEEecCCCCchhHHHHHHHhccccceEEEEEEEeecccceee
Confidence 45668999999888888888888776 77788899999999999999988754 334 46777889999999
Q ss_pred CCeEEEEeCCC
Q 006122 352 EGIVYVVDSGF 362 (660)
Q Consensus 352 p~v~~VId~g~ 362 (660)
..-+.||..-+
T Consensus 561 tAa~~VVFaEL 571 (689)
T KOG1000|consen 561 TAASVVVFAEL 571 (689)
T ss_pred eccceEEEEEe
Confidence 99999997555
No 156
>KOG0392 consensus SNF2 family DNA-dependent ATPase domain-containing protein [Transcription]
Probab=98.55 E-value=4.7e-06 Score=94.69 Aligned_cols=117 Identities=21% Similarity=0.279 Sum_probs=87.5
Q ss_pred CCcEEEEcCCHHHHHHHHHHHHHHhhhccCCCCCeEEEEccCCCCHHHHhhhcCCCCCC-CcEE-EEeCCCcccccCCCC
Q 006122 276 PGDILVFLTGQDDIDATIQLLTEEARTSKKNSSGLIILPLYSGLSRAEQEQVFSPTPRG-KRKV-VISTNIAETSLTLEG 353 (660)
Q Consensus 276 ~~~iLVF~~~~~~i~~l~~~L~~~~~~~~~~~~~~~v~~lh~~l~~~~r~~v~~~f~~g-~~~v-lvaT~i~e~Gidip~ 353 (660)
..++||||.=+..+.-+.+.|.+. ..+.+.-..+.|+.++.+|.++.+.|.++ .++| +++|.+.+-|+|+-+
T Consensus 1340 qHRiLIFcQlK~mlDlVekDL~k~------~mpsVtymRLDGSVpp~~R~kiV~~FN~DptIDvLlLTThVGGLGLNLTG 1413 (1549)
T KOG0392|consen 1340 QHRILIFCQLKSMLDLVEKDLFKK------YMPSVTYMRLDGSVPPGDRQKIVERFNEDPTIDVLLLTTHVGGLGLNLTG 1413 (1549)
T ss_pred cceeEEeeeHHHHHHHHHHHHhhh------hcCceeEEEecCCCCcHHHHHHHHHhcCCCceeEEEEeeeccccccccCC
Confidence 357999999999888888777654 23456667899999999999999999988 6776 467789999999999
Q ss_pred eEEEEeCCCccceeecCCCCcccceeeecCHHhHHHhhcccCCCCCcEEEEccChHHhhh
Q 006122 354 IVYVVDSGFSKQRFYNPISDIENLVVAPISKASARQRAGRAGRVRPGKCYRLYTEEYFVK 413 (660)
Q Consensus 354 v~~VId~g~~k~~~~~~~~~~~~l~~~~~s~~~~~QR~GRaGR~~~G~~~~l~~~~~~~~ 413 (660)
.+.||...- .|||.+ --+++-|+-|.|..+--.+|||+++...+.
T Consensus 1414 ADTVVFvEH----DWNPMr-----------DLQAMDRAHRIGQKrvVNVyRlItrGTLEE 1458 (1549)
T KOG0392|consen 1414 ADTVVFVEH----DWNPMR-----------DLQAMDRAHRIGQKRVVNVYRLITRGTLEE 1458 (1549)
T ss_pred CceEEEEec----CCCchh-----------hHHHHHHHHhhcCceeeeeeeehhcccHHH
Confidence 999996322 133332 334445555555556667899999877665
No 157
>KOG1002 consensus Nucleotide excision repair protein RAD16 [Replication, recombination and repair]
Probab=98.53 E-value=6.1e-06 Score=85.35 Aligned_cols=166 Identities=20% Similarity=0.154 Sum_probs=95.5
Q ss_pred CCCCCCCccchHhHHHHhc--CCCcHHHHHHHHHHHhcCCE-----EEEEcCCCCcHHHHHHHHHHhccccCCCeEEEEe
Q 006122 29 LSSASSIGYGYASIEKQRQ--RLPVYKYRTAILYLVETHAT-----TIIVGETGSGKTTQIPQYLKEAGWADGGRVIACT 101 (660)
Q Consensus 29 ~~~~~~~~~~~~~~~~~~~--~lPi~~~~~~i~~~l~~~~~-----vii~apTGsGKT~~ip~~l~~~~~~~~~~~i~v~ 101 (660)
|.++.-..+...+-.++.. .+|+-++|++.+..+..... -|+.-+.|-|||-|.-.+++... .+.+.++++
T Consensus 161 ~~dlde~~p~i~e~aeqP~dlii~LL~fQkE~l~Wl~~QE~Ss~~GGiLADEMGMGKTIQtIaLllae~--~ra~tLVva 238 (791)
T KOG1002|consen 161 FTDLDEANPVIAERAEQPDDLIIPLLPFQKEGLAWLTSQEESSVAGGILADEMGMGKTIQTIALLLAEV--DRAPTLVVA 238 (791)
T ss_pred hhhhhhcCchhhhcccCcccceecchhhhHHHHHHHHHhhhhhhccceehhhhccchHHHHHHHHHhcc--ccCCeeEEc
Confidence 4444444444444434433 36899999999987754332 36777999999966544444322 445578899
Q ss_pred CchHHHHHHHHHHHHHHhCC--eeeeEEeeeeeccccCCCCCceEEEechHHHHHHHhcCC--------------CCC--
Q 006122 102 QPRRLAVQAVASRVAEEMGV--KVGEEVGYTIRFEDFTNKDLTAIKFLTDGVLLREMMDDP--------------LLT-- 163 (660)
Q Consensus 102 p~r~la~~~~~~~~~~~~~~--~~~~~vg~~~~~~~~~~~~~~~I~v~T~~~ll~~l~~~~--------------~l~-- 163 (660)
|+.++ .++...+.....- ++-...|- .|..+...-.+.+++.+|...+-....... .|.
T Consensus 239 P~VAl--mQW~nEI~~~T~gslkv~~YhG~-~R~~nikel~~YDvVLTty~vvEs~yRk~~~GfrrKngv~ke~SlLHsi 315 (791)
T KOG1002|consen 239 PTVAL--MQWKNEIERHTSGSLKVYIYHGA-KRDKNIKELMNYDVVLTTYAVVESVYRKQDYGFRRKNGVDKEKSLLHSI 315 (791)
T ss_pred cHHHH--HHHHHHHHHhccCceEEEEEecc-cccCCHHHhhcCcEEEEecHHHHHHHHhccccccccCCcccccchhhhc
Confidence 98544 5666666665542 22222331 222111122268999999988776654311 233
Q ss_pred CCcEEEEeCCC---cCCcChhHHHHHHHHHHHhcCCceEEEeeccc
Q 006122 164 KYSVIMVDEAH---ERSISTDILLGLLKKIQRCRSDLRLIISSATI 206 (660)
Q Consensus 164 ~~~~iIiDE~H---er~~~~d~ll~~l~~~~~~~~~~kii~~SAT~ 206 (660)
++--||+|||| +|..++.-...-++ .-+-+.+|.|+
T Consensus 316 ~~~RiIlDEAH~IK~R~snTArAV~~L~-------tt~rw~LSGTP 354 (791)
T KOG1002|consen 316 KFYRIILDEAHNIKDRQSNTARAVFALE-------TTYRWCLSGTP 354 (791)
T ss_pred eeeeeehhhhcccccccccHHHHHHhhH-------hhhhhhccCCc
Confidence 34569999999 45555432222222 12346789997
No 158
>COG0653 SecA Preprotein translocase subunit SecA (ATPase, RNA helicase) [Intracellular trafficking and secretion]
Probab=98.36 E-value=9.9e-06 Score=90.89 Aligned_cols=123 Identities=24% Similarity=0.249 Sum_probs=79.1
Q ss_pred CCCcHHHHHHHHHHHhcCCEEEEEcCCCCcHH--HHHHHHHHhccccCCCeEEEEeCchHHHHH--HHHHHHHHHhCCee
Q 006122 48 RLPVYKYRTAILYLVETHATTIIVGETGSGKT--TQIPQYLKEAGWADGGRVIACTQPRRLAVQ--AVASRVAEEMGVKV 123 (660)
Q Consensus 48 ~lPi~~~~~~i~~~l~~~~~vii~apTGsGKT--~~ip~~l~~~~~~~~~~~i~v~p~r~la~~--~~~~~~~~~~~~~~ 123 (660)
.+-...+--+++-++.-+.--|...-||-||| ..+|.++... .+..+.+++.---|+.. .+...+-+.+|..+
T Consensus 76 vlg~~~~dVQliG~i~lh~g~iaEM~TGEGKTL~atlp~ylnaL---~gkgVhvVTvNdYLA~RDae~m~~l~~~LGlsv 152 (822)
T COG0653 76 VLGMRHFDVQLLGGIVLHLGDIAEMRTGEGKTLVATLPAYLNAL---AGKGVHVVTVNDYLARRDAEWMGPLYEFLGLSV 152 (822)
T ss_pred hcCCChhhHHHhhhhhhcCCceeeeecCCchHHHHHHHHHHHhc---CCCCcEEeeehHHhhhhCHHHHHHHHHHcCCce
Confidence 34444455567777776777799999999999 3345555433 34556777776666655 44555667788888
Q ss_pred eeEEeeeeeccccCCCCCceEEEechHHH-----HHHHhc---CCCCCCCcEEEEeCCC
Q 006122 124 GEEVGYTIRFEDFTNKDLTAIKFLTDGVL-----LREMMD---DPLLTKYSVIMVDEAH 174 (660)
Q Consensus 124 ~~~vg~~~~~~~~~~~~~~~I~v~T~~~l-----l~~l~~---~~~l~~~~~iIiDE~H 174 (660)
|....+....+....- .++|+|+|...| -..+.. +.......+-|+||++
T Consensus 153 G~~~~~m~~~ek~~aY-~~DItY~TnnElGFDYLRDNm~~~~ee~vqr~~~faIvDEvD 210 (822)
T COG0653 153 GVILAGMSPEEKRAAY-ACDITYGTNNELGFDYLRDNMVTSQEEKVQRGLNFAIVDEVD 210 (822)
T ss_pred eeccCCCChHHHHHHH-hcCceeccccccCcchhhhhhhccHHHhhhccCCeEEEcchh
Confidence 7766665544444445 789999998554 222211 2235567788888877
No 159
>COG0610 Type I site-specific restriction-modification system, R (restriction) subunit and related helicases [Defense mechanisms]
Probab=98.34 E-value=2.3e-05 Score=92.34 Aligned_cols=133 Identities=24% Similarity=0.233 Sum_probs=75.0
Q ss_pred CEEEEEcCCCCcHH-HH--HHHHHHhccccCCCeEEEEeCchHHHHHHHHHHHHHHhCCeee-eEEeeeeeccccCCCCC
Q 006122 66 ATTIIVGETGSGKT-TQ--IPQYLKEAGWADGGRVIACTQPRRLAVQAVASRVAEEMGVKVG-EEVGYTIRFEDFTNKDL 141 (660)
Q Consensus 66 ~~vii~apTGsGKT-~~--ip~~l~~~~~~~~~~~i~v~p~r~la~~~~~~~~~~~~~~~~~-~~vg~~~~~~~~~~~~~ 141 (660)
+.-+|.=-|||||| |. +...+.+. .....+++||-.+.|-.|. .+.+........- .................
T Consensus 274 ~~G~IWHtqGSGKTlTm~~~A~~l~~~--~~~~~v~fvvDR~dLd~Q~-~~~f~~~~~~~~~~~~~~s~~~Lk~~l~~~~ 350 (962)
T COG0610 274 KGGYIWHTQGSGKTLTMFKLARLLLEL--PKNPKVLFVVDRKDLDDQT-SDEFQSFGKVAFNDPKAESTSELKELLEDGK 350 (962)
T ss_pred CceEEEeecCCchHHHHHHHHHHHHhc--cCCCeEEEEechHHHHHHH-HHHHHHHHHhhhhcccccCHHHHHHHHhcCC
Confidence 35899999999999 22 33444444 3455677777776776663 2222221110000 00000000001111114
Q ss_pred ceEEEechHHHHHHHhcC-C--CCCCCcEEEEeCCCcCCcChhHHHHHHHHHHHhcCCceEEEeeccc
Q 006122 142 TAIKFLTDGVLLREMMDD-P--LLTKYSVIMVDEAHERSISTDILLGLLKKIQRCRSDLRLIISSATI 206 (660)
Q Consensus 142 ~~I~v~T~~~ll~~l~~~-~--~l~~~~~iIiDE~Her~~~~d~ll~~l~~~~~~~~~~kii~~SAT~ 206 (660)
..|+++|-+.+-...... + .-.+-=+||+|||| |+...... ..++. ..++...+++|.|+
T Consensus 351 ~~ii~TTIQKf~~~~~~~~~~~~~~~~ivvI~DEaH-RSQ~G~~~-~~~~~---~~~~a~~~gFTGTP 413 (962)
T COG0610 351 GKIIVTTIQKFNKAVKEDELELLKRKNVVVIIDEAH-RSQYGELA-KLLKK---ALKKAIFIGFTGTP 413 (962)
T ss_pred CcEEEEEecccchhhhcccccccCCCcEEEEEechh-hccccHHH-HHHHH---HhccceEEEeeCCc
Confidence 689999999998776554 1 23344578999999 88665433 33333 34558899999998
No 160
>KOG0389 consensus SNF2 family DNA-dependent ATPase [Chromatin structure and dynamics]
Probab=98.34 E-value=7.4e-06 Score=89.45 Aligned_cols=115 Identities=20% Similarity=0.258 Sum_probs=88.9
Q ss_pred CCCcEEEEcCCHHHHHHHHHHHHHHhhhccCCCCCeEEEEccCCCCHHHHhhhcCCCCCCC--cEEEEeCCCcccccCCC
Q 006122 275 PPGDILVFLTGQDDIDATIQLLTEEARTSKKNSSGLIILPLYSGLSRAEQEQVFSPTPRGK--RKVVISTNIAETSLTLE 352 (660)
Q Consensus 275 ~~~~iLVF~~~~~~i~~l~~~L~~~~~~~~~~~~~~~v~~lh~~l~~~~r~~v~~~f~~g~--~~vlvaT~i~e~Gidip 352 (660)
.+.+||+|..=.....-+-..|... ++....+.|...-.+|+.++..|-..+ .-.|++|-..+-|||+-
T Consensus 776 ~G~RVLiFSQFTqmLDILE~~L~~l---------~~~ylRLDGsTqV~~RQ~lId~Fn~d~difVFLLSTKAGG~GINLt 846 (941)
T KOG0389|consen 776 KGDRVLIFSQFTQMLDILEVVLDTL---------GYKYLRLDGSTQVNDRQDLIDEFNTDKDIFVFLLSTKAGGFGINLT 846 (941)
T ss_pred cCCEEEEeeHHHHHHHHHHHHHHhc---------CceEEeecCCccchHHHHHHHhhccCCceEEEEEeeccCcceeccc
Confidence 3467999976555544444444333 788899999999999999999996543 44689999999999999
Q ss_pred CeEEEEeCCCccceeecCCCCcccceeeecCHHhHHHhhcccCCCCCcEEEEccChHHhhh
Q 006122 353 GIVYVVDSGFSKQRFYNPISDIENLVVAPISKASARQRAGRAGRVRPGKCYRLYTEEYFVK 413 (660)
Q Consensus 353 ~v~~VId~g~~k~~~~~~~~~~~~l~~~~~s~~~~~QR~GRaGR~~~G~~~~l~~~~~~~~ 413 (660)
..++||-.+. .|| |..--++.-|+-|.|.++|-.+|+|+++...+.
T Consensus 847 ~An~VIihD~----dFN-----------P~dD~QAEDRcHRvGQtkpVtV~rLItk~TIEE 892 (941)
T KOG0389|consen 847 CANTVIIHDI----DFN-----------PYDDKQAEDRCHRVGQTKPVTVYRLITKSTIEE 892 (941)
T ss_pred ccceEEEeec----CCC-----------CcccchhHHHHHhhCCcceeEEEEEEecCcHHH
Confidence 9999986444 133 555566778888889999999999999987765
No 161
>PF00448 SRP54: SRP54-type protein, GTPase domain; InterPro: IPR000897 The signal recognition particle (SRP) is a multimeric protein, which along with its conjugate receptor (SR), is involved in targeting secretory proteins to the rough endoplasmic reticulum (RER) membrane in eukaryotes, or to the plasma membrane in prokaryotes [, ]. SRP recognises the signal sequence of the nascent polypeptide on the ribosome, retards its elongation, and docks the SRP-ribosome-polypeptide complex to the RER membrane via the SR receptor. Eukaryotic SRP consists of six polypeptides (SRP9, SRP14, SRP19, SRP54, SRP68 and SRP72) and a single 300 nucleotide 7S RNA molecule. The RNA component catalyses the interaction of SRP with its SR receptor []. In higher eukaryotes, the SRP complex consists of the Alu domain and the S domain linked by the SRP RNA. The Alu domain consists of a heterodimer of SRP9 and SRP14 bound to the 5' and 3' terminal sequences of SRP RNA. This domain is necessary for retarding the elongation of the nascent polypeptide chain, which gives SRP time to dock the ribosome-polypeptide complex to the RER membrane. In archaea, the SRP complex contains 7S RNA like its eukaryotic counterpart, yet only includes two of the six protein subunits found in the eukarytic complex: SRP19 and SRP54 []. This entry represents the GTPase domain of the 54 kDa SRP54 component, a GTP-binding protein that interacts with the signal sequence when it emerges from the ribosome. SRP54 of the signal recognition particle has a three-domain structure: an N-terminal helical bundle domain, a GTPase domain, and the M-domain that binds the 7s RNA and also binds the signal sequence. The extreme C-terminal region is glycine-rich and lower in complexity and poorly conserved between species. The GTPase domain is evolutionary related to P-loop NTPase domains found in a variety of other proteins []. These proteins include Escherichia coli and Bacillus subtilis ffh protein (P48), which seems to be the prokaryotic counterpart of SRP54; signal recognition particle receptor alpha subunit (docking protein), an integral membrane GTP-binding protein which ensures, in conjunction with SRP, the correct targeting of nascent secretory proteins to the endoplasmic reticulum membrane; bacterial FtsY protein, which is believed to play a similar role to that of the docking protein in eukaryotes; the pilA protein from Neisseria gonorrhoeae, the homologue of ftsY; and bacterial flagellar biosynthesis protein flhF.; GO: 0005525 GTP binding, 0006614 SRP-dependent cotranslational protein targeting to membrane; PDB: 2OG2_A 3B9Q_A 3DM9_B 3DMD_B 3E70_C 3DM5_B 2XXA_C 2J28_9 1ZU5_B 1ZU4_A ....
Probab=98.32 E-value=5.4e-06 Score=79.40 Aligned_cols=128 Identities=23% Similarity=0.276 Sum_probs=82.8
Q ss_pred CEEEEEcCCCCcHHHHHHHHHHhccccCCCeEEEEeCchHHHHHHHHHHHHHHhCCeeeeEEeeeeeccccCCCCCceEE
Q 006122 66 ATTIIVGETGSGKTTQIPQYLKEAGWADGGRVIACTQPRRLAVQAVASRVAEEMGVKVGEEVGYTIRFEDFTNKDLTAIK 145 (660)
Q Consensus 66 ~~vii~apTGsGKT~~ip~~l~~~~~~~~~~~i~v~p~r~la~~~~~~~~~~~~~~~~~~~vg~~~~~~~~~~~~~~~I~ 145 (660)
++++++||||+||||.+..+............++.+-+.|+.+....+.+++.+++.+.. ....
T Consensus 2 ~vi~lvGptGvGKTTt~aKLAa~~~~~~~~v~lis~D~~R~ga~eQL~~~a~~l~vp~~~----------~~~~------ 65 (196)
T PF00448_consen 2 KVIALVGPTGVGKTTTIAKLAARLKLKGKKVALISADTYRIGAVEQLKTYAEILGVPFYV----------ARTE------ 65 (196)
T ss_dssp EEEEEEESTTSSHHHHHHHHHHHHHHTT--EEEEEESTSSTHHHHHHHHHHHHHTEEEEE----------SSTT------
T ss_pred EEEEEECCCCCchHhHHHHHHHHHhhccccceeecCCCCCccHHHHHHHHHHHhccccch----------hhcc------
Confidence 468899999999998888777766554344458888889999998899999988865421 0000
Q ss_pred EechHHHHHHHhcCCCCCCCcEEEEeCCCcCCcChhHHHHHHHHHHH-hcCCceEEEeecccchHHH
Q 006122 146 FLTDGVLLREMMDDPLLTKYSVIMVDEAHERSISTDILLGLLKKIQR-CRSDLRLIISSATIEAKSM 211 (660)
Q Consensus 146 v~T~~~ll~~l~~~~~l~~~~~iIiDE~Her~~~~d~ll~~l~~~~~-~~~~~kii~~SAT~~~~~~ 211 (660)
..|..+++........+++++|+||-+. |+........-++.+.. ..+.-.++.+|||...+.+
T Consensus 66 -~~~~~~~~~~l~~~~~~~~D~vlIDT~G-r~~~d~~~~~el~~~~~~~~~~~~~LVlsa~~~~~~~ 130 (196)
T PF00448_consen 66 -SDPAEIAREALEKFRKKGYDLVLIDTAG-RSPRDEELLEELKKLLEALNPDEVHLVLSATMGQEDL 130 (196)
T ss_dssp -SCHHHHHHHHHHHHHHTTSSEEEEEE-S-SSSTHHHHHHHHHHHHHHHSSSEEEEEEEGGGGGHHH
T ss_pred -hhhHHHHHHHHHHHhhcCCCEEEEecCC-cchhhHHHHHHHHHHhhhcCCccceEEEecccChHHH
Confidence 0232333222111113468999999998 66555454555555444 4566678899999955544
No 162
>PF07717 OB_NTP_bind: Oligonucleotide/oligosaccharide-binding (OB)-fold; InterPro: IPR011709 This domain is found towards the C terminus of the DEAD-box helicases (IPR011545 from INTERPRO). In these helicases it appears to be always found in association with IPR007502 from INTERPRO. ; PDB: 3I4U_A 2XAU_B 3KX2_B.
Probab=98.29 E-value=6.4e-07 Score=78.13 Aligned_cols=65 Identities=22% Similarity=0.187 Sum_probs=46.3
Q ss_pred HHHHHHHHHcCCcccCC-------------CCChHHHHHHHHHhhhhhhhccCCCCCcccccccCCCCcEEEccCCC---
Q 006122 584 EQLRRIAQRIGIVMKSC-------------ESDMQVSLLTLLLVCLERISTLYDFPKLMGTCMPSAGCSFVYHVTCS--- 647 (660)
Q Consensus 584 ~ql~~~l~~~~l~~~~~-------------~~~~~~i~~al~~g~~~~ia~~~~~~~~~~~~~~~~~~~~~~hp~~~--- 647 (660)
+||.++|++.|+...+. ..+++.||++|++||++|+|++.....|... ..+..+++||+|+
T Consensus 1 ~QL~~il~~~g~~~~~~~~~~~~~~~~~~~~~~~~~i~~~l~aG~~~nvA~~~~~~~y~~~---~~~~~v~iHPsS~l~~ 77 (114)
T PF07717_consen 1 KQLLRILERIGFVPQSASSQSISQRPPNENRDQWELIRAALCAGFYPNVARRDNKGSYKTL---SNGQPVFIHPSSVLFK 77 (114)
T ss_dssp HHHHHHHHHTT----------TTST-----HTHCHHHHHHHHHHHCCCEEEE-TTSSEEET---TTG-EEEE-TTSTTTT
T ss_pred CHHHHHHHHcCCCCCccccccccccccccccccHHHHHHHHHHhhhhheEEeCCCCCEEEe---cCCCEEEEecCccccc
Confidence 59999999999877432 1346789999999999999998766666554 6677999999999
Q ss_pred ----CcEE
Q 006122 648 ----PVLC 651 (660)
Q Consensus 648 ----~~~~ 651 (660)
|++|
T Consensus 78 ~~p~~vvy 85 (114)
T PF07717_consen 78 KPPKWVVY 85 (114)
T ss_dssp TT-SEEEE
T ss_pred cccccchh
Confidence 6666
No 163
>KOG0952 consensus DNA/RNA helicase MER3/SLH1, DEAD-box superfamily [RNA processing and modification]
Probab=98.26 E-value=4.9e-07 Score=101.20 Aligned_cols=170 Identities=17% Similarity=0.194 Sum_probs=104.4
Q ss_pred cCCCcHHHHHHHHHHHhc----------------CCEEEEEcCCCCcHHHHHHHHHHhc-cccCCCeEEEEeCchHHHHH
Q 006122 47 QRLPVYKYRTAILYLVET----------------HATTIIVGETGSGKTTQIPQYLKEA-GWADGGRVIACTQPRRLAVQ 109 (660)
Q Consensus 47 ~~lPi~~~~~~i~~~l~~----------------~~~vii~apTGsGKT~~ip~~l~~~-~~~~~~~~i~v~p~r~la~~ 109 (660)
..+|+...+...++++.+ +.++++-+|||+|||..+...+... ...++.++++++|-+++...
T Consensus 909 ~plp~~~L~~~~~e~~~~~fn~~q~~if~~~y~td~~~~~g~ptgsgkt~~ae~a~~~~~~~~p~~kvvyIap~kalvke 988 (1230)
T KOG0952|consen 909 RPLPSSALKNVVFEALYKYFNPIQTQIFHCLYHTDLNFLLGAPTGSGKTVVAELAIFRALSYYPGSKVVYIAPDKALVKE 988 (1230)
T ss_pred CCCcchhhccccHHHhhcccCCccceEEEEEeecchhhhhcCCccCcchhHHHHHHHHHhccCCCccEEEEcCCchhhcc
Confidence 456666666666665532 3456788999999995544333322 22345788999999988765
Q ss_pred HHHH---HHHHHhCCeeeeEEeeeeeccccCCCCCceEEEechHHHHHHHh---cCCCCCCCcEEEEeCCCcCCcChh-H
Q 006122 110 AVAS---RVAEEMGVKVGEEVGYTIRFEDFTNKDLTAIKFLTDGVLLREMM---DDPLLTKYSVIMVDEAHERSISTD-I 182 (660)
Q Consensus 110 ~~~~---~~~~~~~~~~~~~vg~~~~~~~~~~~~~~~I~v~T~~~ll~~l~---~~~~l~~~~~iIiDE~Her~~~~d-~ 182 (660)
.+.+ +.-.. |.++....|..... -.... .++++++||+....... +...+.+++.+|+||.|.-+.+-. .
T Consensus 989 r~~Dw~~r~~~~-g~k~ie~tgd~~pd-~~~v~-~~~~~ittpek~dgi~Rsw~~r~~v~~v~~iv~de~hllg~~rgPV 1065 (1230)
T KOG0952|consen 989 RSDDWSKRDELP-GIKVIELTGDVTPD-VKAVR-EADIVITTPEKWDGISRSWQTRKYVQSVSLIVLDEIHLLGEDRGPV 1065 (1230)
T ss_pred cccchhhhcccC-CceeEeccCccCCC-hhhee-cCceEEcccccccCccccccchhhhccccceeecccccccCCCcce
Confidence 3322 22111 55566655533222 12223 68999999998776554 344588999999999995443311 2
Q ss_pred HHHHHHHH----HHhcCCceEEEeeccc-chHHHHHHhhcCC
Q 006122 183 LLGLLKKI----QRCRSDLRLIISSATI-EAKSMSAFFHARK 219 (660)
Q Consensus 183 ll~~l~~~----~~~~~~~kii~~SAT~-~~~~~~~~~~~~~ 219 (660)
+..+.... ....+..|++++|--+ ++.++++|++..+
T Consensus 1066 le~ivsr~n~~s~~t~~~vr~~glsta~~na~dla~wl~~~~ 1107 (1230)
T KOG0952|consen 1066 LEVIVSRMNYISSQTEEPVRYLGLSTALANANDLADWLNIKD 1107 (1230)
T ss_pred EEEEeeccccCccccCcchhhhhHhhhhhccHHHHHHhCCCC
Confidence 11111111 1123567888877555 8999999998765
No 164
>PF00176 SNF2_N: SNF2 family N-terminal domain; InterPro: IPR000330 This domain is found in proteins involved in a variety of processes including transcription regulation (e.g., SNF2, STH1, brahma, MOT1), DNA repair (e.g., ERCC6, RAD16, RAD5), DNA recombination (e.g., RAD54), and chromatin unwinding (e.g., ISWI) as well as a variety of other proteins with little functional information (e.g., lodestar, ETL1) [, ]. SNF2 functions as the ATPase component of the SNF2/SWI multisubunit complex, which utilises energy derived from ATP hydrolysis to disrupt histone-DNA interactions, resulting in the increased accessibility of DNA to transcription factors. Proteins that contain this domain appear to be distantly related to the DEAX box helicases IPR001410 from INTERPRO, however no helicase activity has ever been demonstrated for these proteins. ; GO: 0003677 DNA binding, 0005524 ATP binding; PDB: 1Z63_B 1Z3I_X 3DMQ_A 3MWY_W.
Probab=98.21 E-value=6.4e-06 Score=85.01 Aligned_cols=132 Identities=16% Similarity=0.115 Sum_probs=67.6
Q ss_pred cCCEEEEEcCCCCcHHHHHHHHHH---hcccc-CCCeEEEEeCchHHHHHHHHHHHHHHhC---CeeeeEEeee-eeccc
Q 006122 64 THATTIIVGETGSGKTTQIPQYLK---EAGWA-DGGRVIACTQPRRLAVQAVASRVAEEMG---VKVGEEVGYT-IRFED 135 (660)
Q Consensus 64 ~~~~vii~apTGsGKT~~ip~~l~---~~~~~-~~~~~i~v~p~r~la~~~~~~~~~~~~~---~~~~~~vg~~-~~~~~ 135 (660)
..+-.++.-++|+|||.++-.++. ..... ...+.++++|+ .+. .++...+.+... ..+....|.. .....
T Consensus 24 ~~~g~lL~de~GlGKT~~~i~~~~~l~~~~~~~~~~~~LIv~P~-~l~-~~W~~E~~~~~~~~~~~v~~~~~~~~~~~~~ 101 (299)
T PF00176_consen 24 PPRGGLLADEMGLGKTITAIALISYLKNEFPQRGEKKTLIVVPS-SLL-SQWKEEIEKWFDPDSLRVIIYDGDSERRRLS 101 (299)
T ss_dssp TT-EEEE---TTSSHHHHHHHHHHHHHHCCTTSS-S-EEEEE-T-TTH-HHHHHHHHHHSGT-TS-EEEESSSCHHHHTT
T ss_pred CCCCEEEEECCCCCchhhhhhhhhhhhhccccccccceeEeecc-chh-hhhhhhhcccccccccccccccccccccccc
Confidence 456789999999999955444433 22111 11247888888 343 355666666552 2332222322 11111
Q ss_pred cCCCCCceEEEechHHHH--------HHHhcCCCCCCCcEEEEeCCCcC-CcChhHHHHHHHHHHHhcCCceEEEeeccc
Q 006122 136 FTNKDLTAIKFLTDGVLL--------REMMDDPLLTKYSVIMVDEAHER-SISTDILLGLLKKIQRCRSDLRLIISSATI 206 (660)
Q Consensus 136 ~~~~~~~~I~v~T~~~ll--------~~l~~~~~l~~~~~iIiDE~Her-~~~~d~ll~~l~~~~~~~~~~kii~~SAT~ 206 (660)
.......+++++|.+.+. ..+. -.++++||+||+|.- +..+... +.+.... ....+++|||+
T Consensus 102 ~~~~~~~~vvi~ty~~~~~~~~~~~~~~l~----~~~~~~vIvDEaH~~k~~~s~~~----~~l~~l~-~~~~~lLSgTP 172 (299)
T PF00176_consen 102 KNQLPKYDVVITTYETLRKARKKKDKEDLK----QIKWDRVIVDEAHRLKNKDSKRY----KALRKLR-ARYRWLLSGTP 172 (299)
T ss_dssp SSSCCCSSEEEEEHHHHH--TSTHTTHHHH----TSEEEEEEETTGGGGTTTTSHHH----HHHHCCC-ECEEEEE-SS-
T ss_pred ccccccceeeeccccccccccccccccccc----cccceeEEEeccccccccccccc----ccccccc-cceEEeecccc
Confidence 222236889999999998 1222 134899999999953 2222222 2222222 56678899998
No 165
>PF13604 AAA_30: AAA domain; PDB: 1W36_G 3K70_G 3UPU_B 3GPL_A 3E1S_A 3GP8_A.
Probab=98.12 E-value=1.6e-05 Score=76.47 Aligned_cols=126 Identities=23% Similarity=0.350 Sum_probs=65.0
Q ss_pred HHHHHHHHHHHh-cC-CEEEEEcCCCCcHHHHHHHHHHhccccCCCeEEEEeCchHHHHHHHHHHHHHHhCCeeeeEEee
Q 006122 52 YKYRTAILYLVE-TH-ATTIIVGETGSGKTTQIPQYLKEAGWADGGRVIACTQPRRLAVQAVASRVAEEMGVKVGEEVGY 129 (660)
Q Consensus 52 ~~~~~~i~~~l~-~~-~~vii~apTGsGKT~~ip~~l~~~~~~~~~~~i~v~p~r~la~~~~~~~~~~~~~~~~~~~vg~ 129 (660)
...|.+++..+. ++ +.++|.|+.|+||||.+-.+.... ...+.++++++|+...+.. +.+..+........+
T Consensus 3 ~~~Q~~a~~~~l~~~~~~~~l~G~aGtGKT~~l~~~~~~~-~~~g~~v~~~apT~~Aa~~-----L~~~~~~~a~Ti~~~ 76 (196)
T PF13604_consen 3 NEEQREAVRAILTSGDRVSVLQGPAGTGKTTLLKALAEAL-EAAGKRVIGLAPTNKAAKE-----LREKTGIEAQTIHSF 76 (196)
T ss_dssp -HHHHHHHHHHHHCTCSEEEEEESTTSTHHHHHHHHHHHH-HHTT--EEEEESSHHHHHH-----HHHHHTS-EEEHHHH
T ss_pred CHHHHHHHHHHHhcCCeEEEEEECCCCCHHHHHHHHHHHH-HhCCCeEEEECCcHHHHHH-----HHHhhCcchhhHHHH
Confidence 455677777664 33 589999999999998776543322 2245678888988765543 333333322111110
Q ss_pred eeeccccCCCCCceEEEechHHHHHHHhcCCCCCCCcEEEEeCCCcCCcChhHHHHHHHHHHHhcCCceEEEeecc
Q 006122 130 TIRFEDFTNKDLTAIKFLTDGVLLREMMDDPLLTKYSVIMVDEAHERSISTDILLGLLKKIQRCRSDLRLIISSAT 205 (660)
Q Consensus 130 ~~~~~~~~~~~~~~I~v~T~~~ll~~l~~~~~l~~~~~iIiDE~Her~~~~d~ll~~l~~~~~~~~~~kii~~SAT 205 (660)
.......... ..+.+.+.++|||||+- .++...+..+++.+.. .+.|+|++.=+
T Consensus 77 l~~~~~~~~~------------------~~~~~~~~~vliVDEas--mv~~~~~~~ll~~~~~--~~~klilvGD~ 130 (196)
T PF13604_consen 77 LYRIPNGDDE------------------GRPELPKKDVLIVDEAS--MVDSRQLARLLRLAKK--SGAKLILVGDP 130 (196)
T ss_dssp TTEECCEECC------------------SSCC-TSTSEEEESSGG--G-BHHHHHHHHHHS-T---T-EEEEEE-T
T ss_pred HhcCCccccc------------------ccccCCcccEEEEeccc--ccCHHHHHHHHHHHHh--cCCEEEEECCc
Confidence 0000000000 00014567899999998 4555555555555432 35677777644
No 166
>TIGR02768 TraA_Ti Ti-type conjugative transfer relaxase TraA. This protein contains domains distinctive of a single strand exonuclease (N-terminus, MobA/MobL, pfam03389) as well as a helicase domain (central region, homologous to the corresponding region of the F-type relaxase TraI, TIGR02760). This protein likely fills the same role as TraI(F), nicking (at the oriT site) and unwinding the coiled plasmid prior to conjugative transfer.
Probab=98.09 E-value=0.0012 Score=76.30 Aligned_cols=123 Identities=20% Similarity=0.277 Sum_probs=75.5
Q ss_pred CCCcHHHHHHHHHHHhc-CCEEEEEcCCCCcHHHHHHHHHHhccccCCCeEEEEeCchHHHHHHHHHHHHHHhCCeeeeE
Q 006122 48 RLPVYKYRTAILYLVET-HATTIIVGETGSGKTTQIPQYLKEAGWADGGRVIACTQPRRLAVQAVASRVAEEMGVKVGEE 126 (660)
Q Consensus 48 ~lPi~~~~~~i~~~l~~-~~~vii~apTGsGKT~~ip~~l~~~~~~~~~~~i~v~p~r~la~~~~~~~~~~~~~~~~~~~ 126 (660)
...+...|.+.+..+.. +++++|+|+.|+||||++-.+.... ...+..+++++|+-+. +. ++.+..|..
T Consensus 350 ~~~Ls~~Q~~Av~~i~~s~~~~il~G~aGTGKTtll~~i~~~~-~~~g~~V~~~ApTg~A-a~----~L~~~~g~~---- 419 (744)
T TIGR02768 350 HYRLSEEQYEAVRHVTGSGDIAVVVGRAGTGKSTMLKAAREAW-EAAGYRVIGAALSGKA-AE----GLQAESGIE---- 419 (744)
T ss_pred cCCCCHHHHHHHHHHhcCCCEEEEEecCCCCHHHHHHHHHHHH-HhCCCeEEEEeCcHHH-HH----HHHhccCCc----
Confidence 35577888888887766 6899999999999998887654322 2235567777777543 22 222222221
Q ss_pred EeeeeeccccCCCCCceEEEechHHHHHHHhc-CCCCCCCcEEEEeCCCcCCcChhHHHHHHHHHHHhcCCceEEEee
Q 006122 127 VGYTIRFEDFTNKDLTAIKFLTDGVLLREMMD-DPLLTKYSVIMVDEAHERSISTDILLGLLKKIQRCRSDLRLIISS 203 (660)
Q Consensus 127 vg~~~~~~~~~~~~~~~I~v~T~~~ll~~l~~-~~~l~~~~~iIiDE~Her~~~~d~ll~~l~~~~~~~~~~kii~~S 203 (660)
-.|-..++..+.. ...+...++|||||+- +++...+..+++.... .+.|+|++.
T Consensus 420 -------------------a~Ti~~~~~~~~~~~~~~~~~~llIvDEas--Mv~~~~~~~Ll~~~~~--~~~kliLVG 474 (744)
T TIGR02768 420 -------------------SRTLASLEYAWANGRDLLSDKDVLVIDEAG--MVGSRQMARVLKEAEE--AGAKVVLVG 474 (744)
T ss_pred -------------------eeeHHHHHhhhccCcccCCCCcEEEEECcc--cCCHHHHHHHHHHHHh--cCCEEEEEC
Confidence 0122223222222 2236788999999998 5666666666655432 467777776
No 167
>PF13401 AAA_22: AAA domain; PDB: 2QBY_B 1FNN_B 1W5T_A 1W5S_B.
Probab=98.06 E-value=3.2e-06 Score=75.60 Aligned_cols=115 Identities=22% Similarity=0.359 Sum_probs=62.8
Q ss_pred hcCCEEEEEcCCCCcHHHHHHHHHHhcccc----CCCeEEEEeCchHHHHHHHHHHHHHHhCCeeeeEEeeeeeccccCC
Q 006122 63 ETHATTIIVGETGSGKTTQIPQYLKEAGWA----DGGRVIACTQPRRLAVQAVASRVAEEMGVKVGEEVGYTIRFEDFTN 138 (660)
Q Consensus 63 ~~~~~vii~apTGsGKT~~ip~~l~~~~~~----~~~~~i~v~p~r~la~~~~~~~~~~~~~~~~~~~vg~~~~~~~~~~ 138 (660)
++++.++|.||+|+|||+++-.+....... ....++.+.-+..-....+.+.+...++.....
T Consensus 2 ~~~~~~~i~G~~G~GKT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~~~~~------------- 68 (131)
T PF13401_consen 2 QSQRILVISGPPGSGKTTLIKRLARQLNAEAEIKNHPDVIYVNCPSSRTPRDFAQEILEALGLPLKS------------- 68 (131)
T ss_dssp -----EEEEE-TTSSHHHHHHHHHHHHHHHHHHCCCEEEEEEEHHHHSSHHHHHHHHHHHHT-SSSS-------------
T ss_pred CCCcccEEEcCCCCCHHHHHHHHHHHhHHhhhccCCCcEEEEEeCCCCCHHHHHHHHHHHhCccccc-------------
Confidence 356789999999999999988877754211 134455555444444557777777777643211
Q ss_pred CCCceEEEechH----HHHHHHhcCCCCCCCcEEEEeCCCcCCcChhHHHHHHHHHHHhcCCceEEEeec
Q 006122 139 KDLTAIKFLTDG----VLLREMMDDPLLTKYSVIMVDEAHERSISTDILLGLLKKIQRCRSDLRLIISSA 204 (660)
Q Consensus 139 ~~~~~I~v~T~~----~ll~~l~~~~~l~~~~~iIiDE~Her~~~~d~ll~~l~~~~~~~~~~kii~~SA 204 (660)
-.+.. .+.+.+.... ..+|||||+|... . +..+..++.+.. ..++++|+.+-
T Consensus 69 -------~~~~~~l~~~~~~~l~~~~----~~~lviDe~~~l~-~-~~~l~~l~~l~~-~~~~~vvl~G~ 124 (131)
T PF13401_consen 69 -------RQTSDELRSLLIDALDRRR----VVLLVIDEADHLF-S-DEFLEFLRSLLN-ESNIKVVLVGT 124 (131)
T ss_dssp -------TS-HHHHHHHHHHHHHHCT----EEEEEEETTHHHH-T-HHHHHHHHHHTC-SCBEEEEEEES
T ss_pred -------cCCHHHHHHHHHHHHHhcC----CeEEEEeChHhcC-C-HHHHHHHHHHHh-CCCCeEEEEEC
Confidence 11233 3333333322 2799999999632 3 344444455444 56676665543
No 168
>COG1419 FlhF Flagellar GTP-binding protein [Cell motility and secretion]
Probab=98.05 E-value=0.00011 Score=76.14 Aligned_cols=129 Identities=22% Similarity=0.230 Sum_probs=94.1
Q ss_pred CCEEEEEcCCCCcHHHHHHHHHHhcc--ccCCCeEEEEeCchHHHHHHHHHHHHHHhCCeeeeEEeeeeeccccCCCCCc
Q 006122 65 HATTIIVGETGSGKTTQIPQYLKEAG--WADGGRVIACTQPRRLAVQAVASRVAEEMGVKVGEEVGYTIRFEDFTNKDLT 142 (660)
Q Consensus 65 ~~~vii~apTGsGKT~~ip~~l~~~~--~~~~~~~i~v~p~r~la~~~~~~~~~~~~~~~~~~~vg~~~~~~~~~~~~~~ 142 (660)
++++.++||||.||||.+..+..... .......|+-+-+-|+.|....+..++.+++.+
T Consensus 203 ~~vi~LVGPTGVGKTTTlAKLAar~~~~~~~~kVaiITtDtYRIGA~EQLk~Ya~im~vp~------------------- 263 (407)
T COG1419 203 KRVIALVGPTGVGKTTTLAKLAARYVMLKKKKKVAIITTDTYRIGAVEQLKTYADIMGVPL------------------- 263 (407)
T ss_pred CcEEEEECCCCCcHHHHHHHHHHHHHhhccCcceEEEEeccchhhHHHHHHHHHHHhCCce-------------------
Confidence 78999999999999977776665544 222334588889999999988888899887643
Q ss_pred eEEEechHHHHHHHhcCCCCCCCcEEEEeCCCcCCcChhHHHHHHHHHHHhcCC-ceEEEeecccchHHHHHHhhc
Q 006122 143 AIKFLTDGVLLREMMDDPLLTKYSVIMVDEAHERSISTDILLGLLKKIQRCRSD-LRLIISSATIEAKSMSAFFHA 217 (660)
Q Consensus 143 ~I~v~T~~~ll~~l~~~~~l~~~~~iIiDE~Her~~~~d~ll~~l~~~~~~~~~-~kii~~SAT~~~~~~~~~~~~ 217 (660)
.++-+|.-|...+.. +.++++|.||=+- |+........-++.+.....+ -..+.+|||...+++.+.+..
T Consensus 264 -~vv~~~~el~~ai~~---l~~~d~ILVDTaG-rs~~D~~~i~el~~~~~~~~~i~~~Lvlsat~K~~dlkei~~~ 334 (407)
T COG1419 264 -EVVYSPKELAEAIEA---LRDCDVILVDTAG-RSQYDKEKIEELKELIDVSHSIEVYLVLSATTKYEDLKEIIKQ 334 (407)
T ss_pred -EEecCHHHHHHHHHH---hhcCCEEEEeCCC-CCccCHHHHHHHHHHHhccccceEEEEEecCcchHHHHHHHHH
Confidence 345566666665542 6788999999999 776666666666666654434 456789999977777766554
No 169
>PRK12723 flagellar biosynthesis regulator FlhF; Provisional
Probab=98.00 E-value=0.00013 Score=76.95 Aligned_cols=130 Identities=22% Similarity=0.301 Sum_probs=79.8
Q ss_pred CCEEEEEcCCCCcHHHHHHHHHHhcccc---CCCeE-EEEeCchHHHHHHHHHHHHHHhCCeeeeEEeeeeeccccCCCC
Q 006122 65 HATTIIVGETGSGKTTQIPQYLKEAGWA---DGGRV-IACTQPRRLAVQAVASRVAEEMGVKVGEEVGYTIRFEDFTNKD 140 (660)
Q Consensus 65 ~~~vii~apTGsGKT~~ip~~l~~~~~~---~~~~~-i~v~p~r~la~~~~~~~~~~~~~~~~~~~vg~~~~~~~~~~~~ 140 (660)
..++++.||||+||||.+..+....... .+.++ ++-+-+-+.++....+.+++.++..+.
T Consensus 174 ~~vi~lvGptGvGKTTT~aKLA~~~~~~~~~~g~~V~lit~Dt~R~aa~eQL~~~a~~lgvpv~---------------- 237 (388)
T PRK12723 174 KRVFILVGPTGVGKTTTIAKLAAIYGINSDDKSLNIKIITIDNYRIGAKKQIQTYGDIMGIPVK---------------- 237 (388)
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHHhhhccCCCeEEEEeccCccHHHHHHHHHHhhcCCcceE----------------
Confidence 3588999999999998887666543221 23333 555666677777666666666655431
Q ss_pred CceEEEechHHHHHHHhcCCCCCCCcEEEEeCCCcCCcChhHHHHHHHHHHH-hcCC-ceEEEeecccchHHHHHHhhcC
Q 006122 141 LTAIKFLTDGVLLREMMDDPLLTKYSVIMVDEAHERSISTDILLGLLKKIQR-CRSD-LRLIISSATIEAKSMSAFFHAR 218 (660)
Q Consensus 141 ~~~I~v~T~~~ll~~l~~~~~l~~~~~iIiDE~Her~~~~d~ll~~l~~~~~-~~~~-~kii~~SAT~~~~~~~~~~~~~ 218 (660)
..-++..+...+.. +.++++||||++. |+......+.-++.+.. ..++ -.++.+|||.....+.+.|...
T Consensus 238 ----~~~~~~~l~~~L~~---~~~~DlVLIDTaG-r~~~~~~~l~el~~~l~~~~~~~e~~LVlsat~~~~~~~~~~~~~ 309 (388)
T PRK12723 238 ----AIESFKDLKEEITQ---SKDFDLVLVDTIG-KSPKDFMKLAEMKELLNACGRDAEFHLAVSSTTKTSDVKEIFHQF 309 (388)
T ss_pred ----eeCcHHHHHHHHHH---hCCCCEEEEcCCC-CCccCHHHHHHHHHHHHhcCCCCeEEEEEcCCCCHHHHHHHHHHh
Confidence 11133444443322 4679999999998 66433223333444433 3333 4678999999877777766553
No 170
>PRK11889 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=97.98 E-value=0.00015 Score=75.36 Aligned_cols=123 Identities=17% Similarity=0.270 Sum_probs=71.8
Q ss_pred CEEEEEcCCCCcHHHHHHHHHHhccccCCCeE-EEEeCchHHHHHHHHHHHHHHhCCeeeeEEeeeeeccccCCCCCceE
Q 006122 66 ATTIIVGETGSGKTTQIPQYLKEAGWADGGRV-IACTQPRRLAVQAVASRVAEEMGVKVGEEVGYTIRFEDFTNKDLTAI 144 (660)
Q Consensus 66 ~~vii~apTGsGKT~~ip~~l~~~~~~~~~~~-i~v~p~r~la~~~~~~~~~~~~~~~~~~~vg~~~~~~~~~~~~~~~I 144 (660)
.++.+.||||+||||.+..+..... ..+.++ ++-+-+.++++....+..++..++. -+
T Consensus 242 ~vI~LVGptGvGKTTTiaKLA~~L~-~~GkkVglI~aDt~RiaAvEQLk~yae~lgip--------------------v~ 300 (436)
T PRK11889 242 QTIALIGPTGVGKTTTLAKMAWQFH-GKKKTVGFITTDHSRIGTVQQLQDYVKTIGFE--------------------VI 300 (436)
T ss_pred cEEEEECCCCCcHHHHHHHHHHHHH-HcCCcEEEEecCCcchHHHHHHHHHhhhcCCc--------------------EE
Confidence 5789999999999988877765543 233334 4444466665554444334433322 12
Q ss_pred EEechHHHHHHHhcCCCCCCCcEEEEeCCCcCCcC-hhHHHHHHHHHHHhcCCceEEEeecccchHH
Q 006122 145 KFLTDGVLLREMMDDPLLTKYSVIMVDEAHERSIS-TDILLGLLKKIQRCRSDLRLIISSATIEAKS 210 (660)
Q Consensus 145 ~v~T~~~ll~~l~~~~~l~~~~~iIiDE~Her~~~-~d~ll~~l~~~~~~~~~~kii~~SAT~~~~~ 210 (660)
...++..+.+.+..-..-.++++|+||-+- |... .+.+..+.+.+....++..++.+|||....+
T Consensus 301 v~~d~~~L~~aL~~lk~~~~~DvVLIDTaG-Rs~kd~~lm~EL~~~lk~~~PdevlLVLsATtk~~d 366 (436)
T PRK11889 301 AVRDEAAMTRALTYFKEEARVDYILIDTAG-KNYRASETVEEMIETMGQVEPDYICLTLSASMKSKD 366 (436)
T ss_pred ecCCHHHHHHHHHHHHhccCCCEEEEeCcc-ccCcCHHHHHHHHHHHhhcCCCeEEEEECCccChHH
Confidence 233566665554322112368999999998 5543 3344444444444555656777999984444
No 171
>PRK14722 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=97.93 E-value=0.0001 Score=77.08 Aligned_cols=126 Identities=19% Similarity=0.237 Sum_probs=77.1
Q ss_pred hcCCEEEEEcCCCCcHHHHHHHHHHhccccCC-CeE-EEEeCchHHHHHHHHHHHHHHhCCeeeeEEeeeeeccccCCCC
Q 006122 63 ETHATTIIVGETGSGKTTQIPQYLKEAGWADG-GRV-IACTQPRRLAVQAVASRVAEEMGVKVGEEVGYTIRFEDFTNKD 140 (660)
Q Consensus 63 ~~~~~vii~apTGsGKT~~ip~~l~~~~~~~~-~~~-i~v~p~r~la~~~~~~~~~~~~~~~~~~~vg~~~~~~~~~~~~ 140 (660)
..+.++++.||||+||||.+..+........+ .++ ++.+-+-++.+....+.+++.++..+.
T Consensus 135 ~~g~ii~lvGptGvGKTTtiakLA~~~~~~~G~~~V~lit~D~~R~ga~EqL~~~a~~~gv~~~---------------- 198 (374)
T PRK14722 135 ERGGVFALMGPTGVGKTTTTAKLAARCVMRFGASKVALLTTDSYRIGGHEQLRIFGKILGVPVH---------------- 198 (374)
T ss_pred cCCcEEEEECCCCCCHHHHHHHHHHHHHHhcCCCeEEEEecccccccHHHHHHHHHHHcCCceE----------------
Confidence 45779999999999999988877765433223 233 344445566666666666666664321
Q ss_pred CceEEEechHHHHHHHhcCCCCCCCcEEEEeCCCcCCcChhHHHHHHHHHHHh-cCCceEEEeecccchHHHH
Q 006122 141 LTAIKFLTDGVLLREMMDDPLLTKYSVIMVDEAHERSISTDILLGLLKKIQRC-RSDLRLIISSATIEAKSMS 212 (660)
Q Consensus 141 ~~~I~v~T~~~ll~~l~~~~~l~~~~~iIiDE~Her~~~~d~ll~~l~~~~~~-~~~~kii~~SAT~~~~~~~ 212 (660)
.+-+++.+...+. .+.+.++|+||++- +....+.+...+..+... .+.-+++++|||...+.+.
T Consensus 199 ----~~~~~~~l~~~l~---~l~~~DlVLIDTaG-~~~~d~~l~e~La~L~~~~~~~~~lLVLsAts~~~~l~ 263 (374)
T PRK14722 199 ----AVKDGGDLQLALA---ELRNKHMVLIDTIG-MSQRDRTVSDQIAMLHGADTPVQRLLLLNATSHGDTLN 263 (374)
T ss_pred ----ecCCcccHHHHHH---HhcCCCEEEEcCCC-CCcccHHHHHHHHHHhccCCCCeEEEEecCccChHHHH
Confidence 1222222322222 14567999999998 554445555666655432 2345688999999655544
No 172
>PRK10536 hypothetical protein; Provisional
Probab=97.91 E-value=4.4e-05 Score=74.93 Aligned_cols=58 Identities=24% Similarity=0.182 Sum_probs=43.8
Q ss_pred cCCCcHHHHHHHHHHHhcCCEEEEEcCCCCcHHHHHHHHHHhccccCCCeEEEEeCch
Q 006122 47 QRLPVYKYRTAILYLVETHATTIIVGETGSGKTTQIPQYLKEAGWADGGRVIACTQPR 104 (660)
Q Consensus 47 ~~lPi~~~~~~i~~~l~~~~~vii~apTGsGKT~~ip~~l~~~~~~~~~~~i~v~p~r 104 (660)
..-|....|...+.++.+++.+++.||+|||||+++-.+..+......-..|+++-|.
T Consensus 56 ~i~p~n~~Q~~~l~al~~~~lV~i~G~aGTGKT~La~a~a~~~l~~~~~~kIiI~RP~ 113 (262)
T PRK10536 56 PILARNEAQAHYLKAIESKQLIFATGEAGCGKTWISAAKAAEALIHKDVDRIIVTRPV 113 (262)
T ss_pred cccCCCHHHHHHHHHHhcCCeEEEECCCCCCHHHHHHHHHHHHHhcCCeeEEEEeCCC
Confidence 4468999999999999999999999999999998877666644322333446665554
No 173
>PRK13889 conjugal transfer relaxase TraA; Provisional
Probab=97.86 E-value=0.0024 Score=75.06 Aligned_cols=126 Identities=21% Similarity=0.213 Sum_probs=76.6
Q ss_pred cCCCcHHHHHHHHHHHhc-CCEEEEEcCCCCcHHHHHHHHHHhccccCCCeEEEEeCchHHHHHHHHHHHHHHhCCeeee
Q 006122 47 QRLPVYKYRTAILYLVET-HATTIIVGETGSGKTTQIPQYLKEAGWADGGRVIACTQPRRLAVQAVASRVAEEMGVKVGE 125 (660)
Q Consensus 47 ~~lPi~~~~~~i~~~l~~-~~~vii~apTGsGKT~~ip~~l~~~~~~~~~~~i~v~p~r~la~~~~~~~~~~~~~~~~~~ 125 (660)
..+.+...|.+.+..+.. +++++|+|+.|+||||++-.+ .+.....+..+++++|+-.. +.. +.+..|..
T Consensus 343 ~g~~Ls~eQr~Av~~il~s~~v~vv~G~AGTGKTT~l~~~-~~~~e~~G~~V~~~ApTGkA-A~~----L~e~tGi~--- 413 (988)
T PRK13889 343 RGLVLSGEQADALAHVTDGRDLGVVVGYAGTGKSAMLGVA-REAWEAAGYEVRGAALSGIA-AEN----LEGGSGIA--- 413 (988)
T ss_pred cCCCCCHHHHHHHHHHhcCCCeEEEEeCCCCCHHHHHHHH-HHHHHHcCCeEEEecCcHHH-HHH----HhhccCcc---
Confidence 345677888888877666 568999999999999886543 22222245567777776533 322 22222211
Q ss_pred EEeeeeeccccCCCCCceEEEechHHHHHHHhc-CCCCCCCcEEEEeCCCcCCcChhHHHHHHHHHHHhcCCceEEEeec
Q 006122 126 EVGYTIRFEDFTNKDLTAIKFLTDGVLLREMMD-DPLLTKYSVIMVDEAHERSISTDILLGLLKKIQRCRSDLRLIISSA 204 (660)
Q Consensus 126 ~vg~~~~~~~~~~~~~~~I~v~T~~~ll~~l~~-~~~l~~~~~iIiDE~Her~~~~d~ll~~l~~~~~~~~~~kii~~SA 204 (660)
-.|-..++..+.. ...+...++|||||+- ++++..+..+++.+. ..+.|+|++.=
T Consensus 414 --------------------a~TI~sll~~~~~~~~~l~~~~vlIVDEAS--Mv~~~~m~~LL~~a~--~~garvVLVGD 469 (988)
T PRK13889 414 --------------------SRTIASLEHGWGQGRDLLTSRDVLVIDEAG--MVGTRQLERVLSHAA--DAGAKVVLVGD 469 (988)
T ss_pred --------------------hhhHHHHHhhhcccccccccCcEEEEECcc--cCCHHHHHHHHHhhh--hCCCEEEEECC
Confidence 1133333322222 2236678999999998 667766666665543 34678888765
Q ss_pred c
Q 006122 205 T 205 (660)
Q Consensus 205 T 205 (660)
+
T Consensus 470 ~ 470 (988)
T PRK13889 470 P 470 (988)
T ss_pred H
Confidence 4
No 174
>TIGR00596 rad1 DNA repair protein (rad1). This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford Universit
Probab=97.80 E-value=0.00013 Score=83.88 Aligned_cols=66 Identities=17% Similarity=0.080 Sum_probs=51.0
Q ss_pred CceEEEechHHHHHHHhcCCC-CCCCcEEEEeCCCcCCcChhHHHHHHHHHHHhcCCceEEEeecccc
Q 006122 141 LTAIKFLTDGVLLREMMDDPL-LTKYSVIMVDEAHERSISTDILLGLLKKIQRCRSDLRLIISSATIE 207 (660)
Q Consensus 141 ~~~I~v~T~~~ll~~l~~~~~-l~~~~~iIiDE~Her~~~~d~ll~~l~~~~~~~~~~kii~~SAT~~ 207 (660)
...|+++||.+|..-+..+.. +..++.||+|||| |...+....-+++......++.-+.++||.+.
T Consensus 7 ~ggi~~~T~rIl~~DlL~~ri~~~~itgiiv~~Ah-r~~~~~~eaFI~rlyr~~n~~gfIkafSdsP~ 73 (814)
T TIGR00596 7 EGGIFSITSRILVVDLLTGIIPPELITGILVLRAD-RIIESSQEAFILRLYRQKNKTGFIKAFSDNPE 73 (814)
T ss_pred cCCEEEEechhhHhHHhcCCCCHHHccEEEEeecc-cccccccHHHHHHHHHHhCCCcceEEecCCCc
Confidence 578999999999888777665 9999999999999 55554444444555555666777999999983
No 175
>PRK14974 cell division protein FtsY; Provisional
Probab=97.79 E-value=0.00023 Score=73.69 Aligned_cols=122 Identities=21% Similarity=0.255 Sum_probs=69.6
Q ss_pred CEEEEEcCCCCcHHHHHHHHHHhccccCCCeEEEE-eCchHHHHHHHHHHHHHHhCCeeeeEEeeeeeccccCCCCCceE
Q 006122 66 ATTIIVGETGSGKTTQIPQYLKEAGWADGGRVIAC-TQPRRLAVQAVASRVAEEMGVKVGEEVGYTIRFEDFTNKDLTAI 144 (660)
Q Consensus 66 ~~vii~apTGsGKT~~ip~~l~~~~~~~~~~~i~v-~p~r~la~~~~~~~~~~~~~~~~~~~vg~~~~~~~~~~~~~~~I 144 (660)
.+++++|++|+||||.+..+..... ..+.+++++ +-+.+.++....+..+..++..+.. + ....
T Consensus 141 ~vi~~~G~~GvGKTTtiakLA~~l~-~~g~~V~li~~Dt~R~~a~eqL~~~a~~lgv~v~~--~-------~~g~----- 205 (336)
T PRK14974 141 VVIVFVGVNGTGKTTTIAKLAYYLK-KNGFSVVIAAGDTFRAGAIEQLEEHAERLGVKVIK--H-------KYGA----- 205 (336)
T ss_pred eEEEEEcCCCCCHHHHHHHHHHHHH-HcCCeEEEecCCcCcHHHHHHHHHHHHHcCCceec--c-------cCCC-----
Confidence 5788999999999988776665432 233444444 3455666665555566666654321 0 0000
Q ss_pred EEechHH-HHHHHhcCCCCCCCcEEEEeCCCcCCc-ChhHHHHHHHHHHHhcCCceEEEeecccc
Q 006122 145 KFLTDGV-LLREMMDDPLLTKYSVIMVDEAHERSI-STDILLGLLKKIQRCRSDLRLIISSATIE 207 (660)
Q Consensus 145 ~v~T~~~-ll~~l~~~~~l~~~~~iIiDE~Her~~-~~d~ll~~l~~~~~~~~~~kii~~SAT~~ 207 (660)
.|.. +.+.+.. ....++++||||+++ |.. +.+++..+-+......++..+++++||..
T Consensus 206 ---dp~~v~~~ai~~-~~~~~~DvVLIDTaG-r~~~~~~lm~eL~~i~~~~~pd~~iLVl~a~~g 265 (336)
T PRK14974 206 ---DPAAVAYDAIEH-AKARGIDVVLIDTAG-RMHTDANLMDELKKIVRVTKPDLVIFVGDALAG 265 (336)
T ss_pred ---CHHHHHHHHHHH-HHhCCCCEEEEECCC-ccCCcHHHHHHHHHHHHhhCCceEEEeeccccc
Confidence 1111 1111111 012467899999999 554 44444444333333567888999999983
No 176
>PRK05703 flhF flagellar biosynthesis regulator FlhF; Validated
Probab=97.75 E-value=0.00059 Score=73.44 Aligned_cols=127 Identities=22% Similarity=0.273 Sum_probs=73.3
Q ss_pred CCEEEEEcCCCCcHHHHHHHHHHhcc-ccCCCeE-EEEeCchHHHHHHHHHHHHHHhCCeeeeEEeeeeeccccCCCCCc
Q 006122 65 HATTIIVGETGSGKTTQIPQYLKEAG-WADGGRV-IACTQPRRLAVQAVASRVAEEMGVKVGEEVGYTIRFEDFTNKDLT 142 (660)
Q Consensus 65 ~~~vii~apTGsGKT~~ip~~l~~~~-~~~~~~~-i~v~p~r~la~~~~~~~~~~~~~~~~~~~vg~~~~~~~~~~~~~~ 142 (660)
+.++++.||||+||||.+..+..... ...+.++ ++-+-+.+.++.......++.+++.+
T Consensus 221 ~~~i~~vGptGvGKTTt~~kLA~~~~~~~~g~~V~li~~D~~r~~a~eqL~~~a~~~~vp~------------------- 281 (424)
T PRK05703 221 GGVVALVGPTGVGKTTTLAKLAARYALLYGKKKVALITLDTYRIGAVEQLKTYAKIMGIPV------------------- 281 (424)
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHHHHhcCCCeEEEEECCccHHHHHHHHHHHHHHhCCce-------------------
Confidence 56899999999999988877665543 2233344 44455556655544554555544322
Q ss_pred eEEEechHHHHHHHhcCCCCCCCcEEEEeCCCcCCcChhHHHHHHHHHHH-h-cCCceEEEeecccchHHHHHHh
Q 006122 143 AIKFLTDGVLLREMMDDPLLTKYSVIMVDEAHERSISTDILLGLLKKIQR-C-RSDLRLIISSATIEAKSMSAFF 215 (660)
Q Consensus 143 ~I~v~T~~~ll~~l~~~~~l~~~~~iIiDE~Her~~~~d~ll~~l~~~~~-~-~~~~kii~~SAT~~~~~~~~~~ 215 (660)
....++..+...+.. +.++++||||.+- |.....-....++.+.. . .+.-.++++|||.....+.+..
T Consensus 282 -~~~~~~~~l~~~l~~---~~~~DlVlIDt~G-~~~~d~~~~~~L~~ll~~~~~~~~~~LVl~a~~~~~~l~~~~ 351 (424)
T PRK05703 282 -EVVYDPKELAKALEQ---LRDCDVILIDTAG-RSQRDKRLIEELKALIEFSGEPIDVYLVLSATTKYEDLKDIY 351 (424)
T ss_pred -EccCCHHhHHHHHHH---hCCCCEEEEeCCC-CCCCCHHHHHHHHHHHhccCCCCeEEEEEECCCCHHHHHHHH
Confidence 112234444444432 4468999999997 44332223333333333 2 3345578899999766665543
No 177
>PRK12726 flagellar biosynthesis regulator FlhF; Provisional
Probab=97.75 E-value=0.0003 Score=72.90 Aligned_cols=132 Identities=16% Similarity=0.166 Sum_probs=78.1
Q ss_pred hcCCEEEEEcCCCCcHHHHHHHHHHhccccCCCeE-EEEeCchHHHHHHHHHHHHHHhCCeeeeEEeeeeeccccCCCCC
Q 006122 63 ETHATTIIVGETGSGKTTQIPQYLKEAGWADGGRV-IACTQPRRLAVQAVASRVAEEMGVKVGEEVGYTIRFEDFTNKDL 141 (660)
Q Consensus 63 ~~~~~vii~apTGsGKT~~ip~~l~~~~~~~~~~~-i~v~p~r~la~~~~~~~~~~~~~~~~~~~vg~~~~~~~~~~~~~ 141 (660)
..+.+++++||||+||||.+..+...... .+.++ ++-+-+-+.++....+..++..+..+
T Consensus 204 ~~~~ii~lvGptGvGKTTt~akLA~~l~~-~g~~V~lItaDtyR~gAveQLk~yae~lgvpv------------------ 264 (407)
T PRK12726 204 SNHRIISLIGQTGVGKTTTLVKLGWQLLK-QNRTVGFITTDTFRSGAVEQFQGYADKLDVEL------------------ 264 (407)
T ss_pred cCCeEEEEECCCCCCHHHHHHHHHHHHHH-cCCeEEEEeCCccCccHHHHHHHHhhcCCCCE------------------
Confidence 35678999999999999888777654422 23333 55555666666544444444443321
Q ss_pred ceEEEechHHHHHHHhcCCCCCCCcEEEEeCCCcCCcChhHHHHHHHHHHH-hcCCceEEEeecccchHHHHHHhh
Q 006122 142 TAIKFLTDGVLLREMMDDPLLTKYSVIMVDEAHERSISTDILLGLLKKIQR-CRSDLRLIISSATIEAKSMSAFFH 216 (660)
Q Consensus 142 ~~I~v~T~~~ll~~l~~~~~l~~~~~iIiDE~Her~~~~d~ll~~l~~~~~-~~~~~kii~~SAT~~~~~~~~~~~ 216 (660)
....+|..+.+.+.......++++|+||=+- |+...+-++.-++.+.. ..++.-++.+|||....+..+++.
T Consensus 265 --~~~~dp~dL~~al~~l~~~~~~D~VLIDTAG-r~~~d~~~l~EL~~l~~~~~p~~~~LVLsag~~~~d~~~i~~ 337 (407)
T PRK12726 265 --IVATSPAELEEAVQYMTYVNCVDHILIDTVG-RNYLAEESVSEISAYTDVVHPDLTCFTFSSGMKSADVMTILP 337 (407)
T ss_pred --EecCCHHHHHHHHHHHHhcCCCCEEEEECCC-CCccCHHHHHHHHHHhhccCCceEEEECCCcccHHHHHHHHH
Confidence 1123566655444322223568999999998 55333333343444433 445566778899886666666543
No 178
>TIGR01448 recD_rel helicase, putative, RecD/TraA family. This model describes a family similar to RecD, the exodeoxyribonuclease V alpha chain of TIGR01447. Members of this family, however, are not found in a context of RecB and RecC and are longer by about 200 amino acids at the amino end. Chlamydia muridarum has both a member of this family and a RecD.
Probab=97.74 E-value=0.0003 Score=80.96 Aligned_cols=125 Identities=26% Similarity=0.208 Sum_probs=76.3
Q ss_pred cCCCcHHHHHHHHHHHhcCCEEEEEcCCCCcHHHHHHHHHHhccccCC--CeEEEEeCchHHHHHHHHHHHHHHhCCeee
Q 006122 47 QRLPVYKYRTAILYLVETHATTIIVGETGSGKTTQIPQYLKEAGWADG--GRVIACTQPRRLAVQAVASRVAEEMGVKVG 124 (660)
Q Consensus 47 ~~lPi~~~~~~i~~~l~~~~~vii~apTGsGKT~~ip~~l~~~~~~~~--~~~i~v~p~r~la~~~~~~~~~~~~~~~~~ 124 (660)
....+...|++++..+..+++++|+|+.||||||++-.++..... .+ ..+++++|+-+.+. ++.+..|...
T Consensus 320 ~~~~l~~~Q~~Ai~~~~~~~~~iitGgpGTGKTt~l~~i~~~~~~-~~~~~~v~l~ApTg~AA~-----~L~e~~g~~a- 392 (720)
T TIGR01448 320 LRKGLSEEQKQALDTAIQHKVVILTGGPGTGKTTITRAIIELAEE-LGGLLPVGLAAPTGRAAK-----RLGEVTGLTA- 392 (720)
T ss_pred cCCCCCHHHHHHHHHHHhCCeEEEECCCCCCHHHHHHHHHHHHHH-cCCCceEEEEeCchHHHH-----HHHHhcCCcc-
Confidence 446678888889998889999999999999999888655443321 22 45666777755443 3443333211
Q ss_pred eEEeeeeeccccCCCCCceEEEechHHHHHHHhc------CCCCCCCcEEEEeCCCcCCcChhHHHHHHHHHHHhcCCce
Q 006122 125 EEVGYTIRFEDFTNKDLTAIKFLTDGVLLREMMD------DPLLTKYSVIMVDEAHERSISTDILLGLLKKIQRCRSDLR 198 (660)
Q Consensus 125 ~~vg~~~~~~~~~~~~~~~I~v~T~~~ll~~l~~------~~~l~~~~~iIiDE~Her~~~~d~ll~~l~~~~~~~~~~k 198 (660)
.|-..++..... .......++|||||++ +++...+..+++. ..++.|
T Consensus 393 ----------------------~Tih~lL~~~~~~~~~~~~~~~~~~~llIvDEaS--Mvd~~~~~~Ll~~---~~~~~r 445 (720)
T TIGR01448 393 ----------------------STIHRLLGYGPDTFRHNHLEDPIDCDLLIVDESS--MMDTWLALSLLAA---LPDHAR 445 (720)
T ss_pred ----------------------ccHHHHhhccCCccchhhhhccccCCEEEEeccc--cCCHHHHHHHHHh---CCCCCE
Confidence 111122111000 0112457899999999 5666665555543 446788
Q ss_pred EEEeecc
Q 006122 199 LIISSAT 205 (660)
Q Consensus 199 ii~~SAT 205 (660)
+|++.=+
T Consensus 446 lilvGD~ 452 (720)
T TIGR01448 446 LLLVGDT 452 (720)
T ss_pred EEEECcc
Confidence 8887644
No 179
>TIGR00604 rad3 DNA repair helicase (rad3). All proteins in this family for which funcitons are known are DNA-DNA helicases that funciton in the initiation of transcription and nucleotide excision repair as part of the TFIIH complex. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=97.71 E-value=0.0003 Score=81.35 Aligned_cols=194 Identities=13% Similarity=0.122 Sum_probs=107.9
Q ss_pred eEEEeeccc-chHHHHHHhhcCCCCCCCcccccCCCCCCeEEEEC-C-ccccceEEecCCCchhHHHHHHHHHHHHHhcC
Q 006122 198 RLIISSATI-EAKSMSAFFHARKGRRGLEGVELVPRLEPAILSVE-G-RGFNVQIHYVEEPVSDYVQAAVSTVLLIHDKE 274 (660)
Q Consensus 198 kii~~SAT~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~-~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~ 274 (660)
.+|++|||+ +.+.|.+.++............ .+.....++.+. + ...+....|......++.......+..+...
T Consensus 443 svil~SgTL~p~~~~~~~Lg~~~~~~~~~~~~-~~~~~~~~~i~~~~~~~~~l~~~~~~r~~~~~~~~l~~~i~~~~~~- 520 (705)
T TIGR00604 443 SVILASGTLSPLDAFPRNLGFNPVSQDSPTHI-LKRENLLTLIVTRGSDQVPLSSTFEIRNDPSLVRNLGELLVEFSKI- 520 (705)
T ss_pred EEEEecccCCcHHHHHHHhCCCCccceecCcc-cchHHeEEEEEeeCCCCCeeeeehhccCCHHHHHHHHHHHHHHhhc-
Confidence 478999999 6677777776432111000000 000000011111 1 1223333444344456777777777777665
Q ss_pred CCCcEEEEcCCHHHHHHHHHHHHHHhh--hccCCCCCeEEEEccCCCCHHHHhhhcCCCC----CCCcEEEEeC--CCcc
Q 006122 275 PPGDILVFLTGQDDIDATIQLLTEEAR--TSKKNSSGLIILPLYSGLSRAEQEQVFSPTP----RGKRKVVIST--NIAE 346 (660)
Q Consensus 275 ~~~~iLVF~~~~~~i~~l~~~L~~~~~--~~~~~~~~~~v~~lh~~l~~~~r~~v~~~f~----~g~~~vlvaT--~i~e 346 (660)
.+|.+|||+||....+.+++.+.+... .... ...+.+..- ++ .++..+++.|. .|.--|++|+ ..++
T Consensus 521 ~pgg~lvfFpSy~~l~~v~~~~~~~~~~~~i~~-~k~i~~E~~-~~---~~~~~~l~~f~~~~~~~~gavL~av~gGk~s 595 (705)
T TIGR00604 521 IPDGIVVFFPSYSYLENIVSTWKEMGILENIEK-KKLIFVETK-DA---QETSDALERYKQAVSEGRGAVLLSVAGGKVS 595 (705)
T ss_pred CCCcEEEEccCHHHHHHHHHHHHhcCHHHHHhc-CCCEEEeCC-Cc---chHHHHHHHHHHHHhcCCceEEEEecCCccc
Confidence 457799999999999999988765310 0000 011222221 11 35667777774 3456799999 8999
Q ss_pred cccCCCC--eEEEEeCCCccceeecCC--------------CCcccceeeecCHHhHHHhhcccCCCCC
Q 006122 347 TSLTLEG--IVYVVDSGFSKQRFYNPI--------------SDIENLVVAPISKASARQRAGRAGRVRP 399 (660)
Q Consensus 347 ~Gidip~--v~~VId~g~~k~~~~~~~--------------~~~~~l~~~~~s~~~~~QR~GRaGR~~~ 399 (660)
+|||+++ .+.||-.|+.-....++. .+...+. .........|-+||+=|...
T Consensus 596 EGIDf~~~~~r~ViivGlPf~~~~~~~~~~~~~~~~~~~~~~~~~~~y-~~~a~~~v~QaiGR~IR~~~ 663 (705)
T TIGR00604 596 EGIDFCDDLGRAVIMVGIPYEYTESRILLARLEFLRDQYPIRENQDFY-EFDAMRAVNQAIGRVIRHKD 663 (705)
T ss_pred CccccCCCCCcEEEEEccCCCCCCCHHHHHHHHHHHhhcCCCccHHHH-HHHHHHHHHHHhCccccCcC
Confidence 9999987 577888888652222211 1110111 12334667899999999843
No 180
>PF06862 DUF1253: Protein of unknown function (DUF1253); InterPro: IPR010678 This family is defined by a C-terminal region of approximately 500 residues, Digestive organ expansion factor (DEF) is thought to Regulate the p53 pathway to control the expansion growth of digestive organs and is required for the expansion growth of intestine, liver and exocrine pancreas, but not endocrine pancreas [, ].; GO: 0005634 nucleus
Probab=97.71 E-value=0.0031 Score=67.14 Aligned_cols=245 Identities=14% Similarity=0.117 Sum_probs=146.0
Q ss_pred CceEEEechHHHHHHHhc------CC-CCCCCcEEEEeCCCcC-CcChhHHHHHHHHHHHhcC-----------------
Q 006122 141 LTAIKFLTDGVLLREMMD------DP-LLTKYSVIMVDEAHER-SISTDILLGLLKKIQRCRS----------------- 195 (660)
Q Consensus 141 ~~~I~v~T~~~ll~~l~~------~~-~l~~~~~iIiDE~Her-~~~~d~ll~~l~~~~~~~~----------------- 195 (660)
+.+|++++|=-|-..+.. +. .|+.+.++|||.+|-. +-+.+.+..+++.+.....
T Consensus 131 ~SDIIiASPLGLr~~i~~~~~~~~d~DFLSSIEv~iiD~ad~l~MQNW~Hv~~v~~~lN~~P~~~~~~DfsRVR~w~Ldg 210 (442)
T PF06862_consen 131 SSDIIIASPLGLRMIIGEEGEKKRDYDFLSSIEVLIIDQADVLLMQNWEHVLHVFEHLNLQPKKSHDTDFSRVRPWYLDG 210 (442)
T ss_pred cCCEEEEChHHHHHHhccccccccccchhheeeeEeechhhHHHHhhHHHHHHHHHHhccCCCCCCCCCHHHHHHHHHcC
Confidence 689999999776665542 22 3999999999999932 2455666666655433221
Q ss_pred ----CceEEEeecccchHHHHHHhhc-CCCCCCCcccccCCCCCCeEEEECCccccceEEecCCCch-------hHHHHH
Q 006122 196 ----DLRLIISSATIEAKSMSAFFHA-RKGRRGLEGVELVPRLEPAILSVEGRGFNVQIHYVEEPVS-------DYVQAA 263 (660)
Q Consensus 196 ----~~kii~~SAT~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~-------~~~~~~ 263 (660)
-.|.|++|+..+++ +...|+. +....+... ....... .-.+..-..++.+.|..-+.. ...+--
T Consensus 211 ~a~~~RQtii~S~~~~pe-~~slf~~~~~N~~G~v~--~~~~~~~-~g~i~~v~~~v~Q~F~r~~~~s~~~~~d~Rf~yF 286 (442)
T PF06862_consen 211 QAKYYRQTIIFSSFQTPE-INSLFNRHCQNYAGKVR--LKPPYEA-SGVISQVVVQVRQVFQRFDCSSPADDPDARFKYF 286 (442)
T ss_pred cchheeEeEEecCCCCHH-HHHHHHhhCcCccceEE--Eeecccc-ceeeeccccCCceEEEEecCCCcchhhhHHHHHH
Confidence 25799999988766 3333333 111000000 0000000 011111223333333321111 111222
Q ss_pred HHHHHHHHh-cCCCCcEEEEcCCHHHHHHHHHHHHHHhhhccCCCCCeEEEEccCCCCHHHHhhhcCCCCCCCcEEEEeC
Q 006122 264 VSTVLLIHD-KEPPGDILVFLTGQDDIDATIQLLTEEARTSKKNSSGLIILPLYSGLSRAEQEQVFSPTPRGKRKVVIST 342 (660)
Q Consensus 264 ~~~~~~~~~-~~~~~~iLVF~~~~~~i~~l~~~L~~~~~~~~~~~~~~~v~~lh~~l~~~~r~~v~~~f~~g~~~vlvaT 342 (660)
...++.... ....+.+|||+|+.-+--.+...|.+. ++....+|--.+..+-.++-..|..|+.+|++-|
T Consensus 287 ~~~iLP~l~~~~~~~~~LIfIPSYfDfVRlRN~lk~~---------~~sF~~i~EYts~~~isRAR~~F~~G~~~iLL~T 357 (442)
T PF06862_consen 287 TKKILPQLKRDSKMSGTLIFIPSYFDFVRLRNYLKKE---------NISFVQISEYTSNSDISRARSQFFHGRKPILLYT 357 (442)
T ss_pred HHHHHHHhhhccCCCcEEEEecchhhhHHHHHHHHhc---------CCeEEEecccCCHHHHHHHHHHHHcCCceEEEEE
Confidence 233333333 556678999999999999999998855 6777778777777787778788999999999999
Q ss_pred CCc--ccccCCCCeEEEEeCCCccceeecCCCCcccceeeecCHHhHHHhhcccCC----CCCcEEEEccChHHhhh
Q 006122 343 NIA--ETSLTLEGIVYVVDSGFSKQRFYNPISDIENLVVAPISKASARQRAGRAGR----VRPGKCYRLYTEEYFVK 413 (660)
Q Consensus 343 ~i~--e~Gidip~v~~VId~g~~k~~~~~~~~~~~~l~~~~~s~~~~~QR~GRaGR----~~~G~~~~l~~~~~~~~ 413 (660)
-=+ =+=..|.+|+.||-+|+... |.-..++..+.+.... ...+.|..||++-+...
T Consensus 358 ER~HFfrRy~irGi~~viFY~~P~~---------------p~fY~El~n~~~~~~~~~~~~~~~~~~~lysk~D~~~ 419 (442)
T PF06862_consen 358 ERFHFFRRYRIRGIRHVIFYGPPEN---------------PQFYSELLNMLDESSGGEVDAADATVTVLYSKYDALR 419 (442)
T ss_pred hHHhhhhhceecCCcEEEEECCCCC---------------hhHHHHHHhhhcccccccccccCceEEEEecHhHHHH
Confidence 643 34567888999999777222 2222333333333322 15678999999866544
No 181
>cd00009 AAA The AAA+ (ATPases Associated with a wide variety of cellular Activities) superfamily represents an ancient group of ATPases belonging to the ASCE (for additional strand, catalytic E) division of the P-loop NTPase fold. The ASCE division also includes ABC, RecA-like, VirD4-like, PilT-like, and SF1/2 helicases. Members of the AAA+ ATPases function as molecular chaperons, ATPase subunits of proteases, helicases, or nucleic-acid stimulated ATPases. The AAA+ proteins contain several distinct features in addition to the conserved alpha-beta-alpha core domain structure and the Walker A and B motifs of the P-loop NTPases.
Probab=97.69 E-value=0.00075 Score=60.94 Aligned_cols=47 Identities=21% Similarity=0.208 Sum_probs=30.9
Q ss_pred HHHHHHHHhc--CCEEEEEcCCCCcHHHHHHHHHHhccccCCCeEEEEeC
Q 006122 55 RTAILYLVET--HATTIIVGETGSGKTTQIPQYLKEAGWADGGRVIACTQ 102 (660)
Q Consensus 55 ~~~i~~~l~~--~~~vii~apTGsGKT~~ip~~l~~~~~~~~~~~i~v~p 102 (660)
..++...+.. +..++|.||+|+|||+++-.+..... ..+..++++..
T Consensus 7 ~~~i~~~~~~~~~~~v~i~G~~G~GKT~l~~~i~~~~~-~~~~~v~~~~~ 55 (151)
T cd00009 7 IEALREALELPPPKNLLLYGPPGTGKTTLARAIANELF-RPGAPFLYLNA 55 (151)
T ss_pred HHHHHHHHhCCCCCeEEEECCCCCCHHHHHHHHHHHhh-cCCCCeEEEeh
Confidence 3445555555 78899999999999987776665543 22344444443
No 182
>KOG0386 consensus Chromatin remodeling complex SWI/SNF, component SWI2 and related ATPases (DNA/RNA helicase superfamily) [Chromatin structure and dynamics; Transcription]
Probab=97.67 E-value=2.3e-05 Score=87.88 Aligned_cols=112 Identities=17% Similarity=0.102 Sum_probs=79.4
Q ss_pred CCCcEEEEcCCHHHHHHHHHHHHHHhhhccCCCCCeEEEEccCCCCHHHHhhhcCCCCC---CCcEEEEeCCCcccccCC
Q 006122 275 PPGDILVFLTGQDDIDATIQLLTEEARTSKKNSSGLIILPLYSGLSRAEQEQVFSPTPR---GKRKVVISTNIAETSLTL 351 (660)
Q Consensus 275 ~~~~iLVF~~~~~~i~~l~~~L~~~~~~~~~~~~~~~v~~lh~~l~~~~r~~v~~~f~~---g~~~vlvaT~i~e~Gidi 351 (660)
.++.||.|+.-..-...+...|.-. ++.-..+.|....++|-..++.|.. .....+++|-....|+|+
T Consensus 725 tgHRVLlF~qMTrlmdimEdyL~~~---------~~kYlRLDG~TK~~eRg~ll~~FN~Pds~yf~FllstragglglNl 795 (1157)
T KOG0386|consen 725 TGHRVLLFSQMTRLMDILEDYLQIR---------EYKYLRLDGQTKVEERGDLLEIFNAPDSPYFIFLLSTRAGGLGLNL 795 (1157)
T ss_pred cCcchhhHHHHHHHHHHHHHHHhhh---------hhheeeecCCcchhhHHHHHHHhcCCCCceeeeeeeecccccccch
Confidence 4677888887665555555555433 6677888999999998877776643 356789999999999999
Q ss_pred CCeEEEEeCCCccceeecCCCCcccceeeecCHHhHHHhhcccCCC---CCcEEEEccChHHhhh
Q 006122 352 EGIVYVVDSGFSKQRFYNPISDIENLVVAPISKASARQRAGRAGRV---RPGKCYRLYTEEYFVK 413 (660)
Q Consensus 352 p~v~~VId~g~~k~~~~~~~~~~~~l~~~~~s~~~~~QR~GRaGR~---~~G~~~~l~~~~~~~~ 413 (660)
...+.||- ||+..+. ....|+.-||.|- +.-.++++.+-..++.
T Consensus 796 Qtadtvii--------fdsdwnp----------~~d~qaqdrahrigq~~evRv~rl~tv~sveE 842 (1157)
T KOG0386|consen 796 QTADTVII--------FDSDWNP----------HQDLQAQDRAHRIGQKKEVRVLRLITVNSVEE 842 (1157)
T ss_pred hhcceEEE--------ecCCCCc----------hhHHHHHHHHHHhhchhheeeeeeehhhHHHH
Confidence 98888886 5554432 2334666666554 6778889888665544
No 183
>PF13245 AAA_19: Part of AAA domain
Probab=97.66 E-value=0.00018 Score=57.35 Aligned_cols=57 Identities=23% Similarity=0.334 Sum_probs=35.9
Q ss_pred HHHHHhcCCEEEEEcCCCCcHHHHHHHHHHhccc---cCCCeEEEEeCchHHHHHHHHHHH
Q 006122 58 ILYLVETHATTIIVGETGSGKTTQIPQYLKEAGW---ADGGRVIACTQPRRLAVQAVASRV 115 (660)
Q Consensus 58 i~~~l~~~~~vii~apTGsGKT~~ip~~l~~~~~---~~~~~~i~v~p~r~la~~~~~~~~ 115 (660)
|..++.+++.++|.||.|||||+.+-..+.+... ..+.++++++++++ ++..+.+++
T Consensus 3 v~~al~~~~~~vv~g~pGtGKT~~~~~~i~~l~~~~~~~~~~vlv~a~t~~-aa~~l~~rl 62 (76)
T PF13245_consen 3 VRRALAGSPLFVVQGPPGTGKTTTLAARIAELLAARADPGKRVLVLAPTRA-AADELRERL 62 (76)
T ss_pred HHHHHhhCCeEEEECCCCCCHHHHHHHHHHHHHHHhcCCCCeEEEECCCHH-HHHHHHHHH
Confidence 3346666777888999999999665555444321 12445666666654 445666666
No 184
>PF07517 SecA_DEAD: SecA DEAD-like domain; InterPro: IPR011115 SecA protein binds to the plasma membrane where it interacts with proOmpA to support translocation of proOmpA through the membrane. SecA protein achieves this translocation, in association with SecY protein, in an ATP-dependent manner [,]. This domain represents the N-terminal ATP-dependent helicase domain, which is related to the IPR0011545 from INTERPRO.; GO: 0005524 ATP binding, 0017038 protein import, 0016020 membrane; PDB: 1NL3_B 1NKT_B 3DIN_B 3JUX_A 2FSG_B 2VDA_A 2FSH_A 2FSF_A 2FSI_A 3BXZ_A ....
Probab=97.65 E-value=0.00024 Score=70.85 Aligned_cols=123 Identities=19% Similarity=0.109 Sum_probs=72.6
Q ss_pred CCcHHHHHHHHHHHhcCCEEEEEcCCCCcHHHHHHHHHHhccccCCCeEEEEeCchHHHHH--HHHHHHHHHhCCeeeeE
Q 006122 49 LPVYKYRTAILYLVETHATTIIVGETGSGKTTQIPQYLKEAGWADGGRVIACTQPRRLAVQ--AVASRVAEEMGVKVGEE 126 (660)
Q Consensus 49 lPi~~~~~~i~~~l~~~~~vii~apTGsGKT~~ip~~l~~~~~~~~~~~i~v~p~r~la~~--~~~~~~~~~~~~~~~~~ 126 (660)
+..+..|--..-++..|+ |+...||-|||..+.....-... .+..+-++|...-||.. .....+-+.+|+.+|..
T Consensus 76 ~~p~~vQll~~l~L~~G~--laEm~TGEGKTli~~l~a~~~AL-~G~~V~vvT~NdyLA~RD~~~~~~~y~~LGlsv~~~ 152 (266)
T PF07517_consen 76 LRPYDVQLLGALALHKGR--LAEMKTGEGKTLIAALPAALNAL-QGKGVHVVTSNDYLAKRDAEEMRPFYEFLGLSVGII 152 (266)
T ss_dssp ----HHHHHHHHHHHTTS--EEEESTTSHHHHHHHHHHHHHHT-TSS-EEEEESSHHHHHHHHHHHHHHHHHTT--EEEE
T ss_pred CcccHHHHhhhhhcccce--eEEecCCCCcHHHHHHHHHHHHH-hcCCcEEEeccHHHhhccHHHHHHHHHHhhhccccC
Confidence 344444433334445555 99999999999555444333333 45567778888778776 34445667888888776
Q ss_pred EeeeeeccccCCCCCceEEEechHHHHH-HHhc----CC---CCCCCcEEEEeCCCc
Q 006122 127 VGYTIRFEDFTNKDLTAIKFLTDGVLLR-EMMD----DP---LLTKYSVIMVDEAHE 175 (660)
Q Consensus 127 vg~~~~~~~~~~~~~~~I~v~T~~~ll~-~l~~----~~---~l~~~~~iIiDE~He 175 (660)
.+.....+....- ..+|+|+|...+.- .+.. .. ....+.++|||||+.
T Consensus 153 ~~~~~~~~r~~~Y-~~dI~Y~t~~~~~fD~Lrd~~~~~~~~~~~r~~~~~ivDEvDs 208 (266)
T PF07517_consen 153 TSDMSSEERREAY-AADIVYGTNSEFGFDYLRDNLALSKNEQVQRGFDFAIVDEVDS 208 (266)
T ss_dssp ETTTEHHHHHHHH-HSSEEEEEHHHHHHHHHHHTT-SSGGG--SSSSSEEEECTHHH
T ss_pred ccccCHHHHHHHH-hCcccccccchhhHHHHHHHHhhccchhccCCCCEEEEeccce
Confidence 6633322222222 57899999977653 2221 11 267899999999993
No 185
>PRK13826 Dtr system oriT relaxase; Provisional
Probab=97.63 E-value=0.019 Score=68.12 Aligned_cols=125 Identities=19% Similarity=0.236 Sum_probs=78.9
Q ss_pred CCCcHHHHHHHHHHHh-cCCEEEEEcCCCCcHHHHHHHHHHhccccCCCeEEEEeCchHHHHHHHHHHHHHHhCCeeeeE
Q 006122 48 RLPVYKYRTAILYLVE-THATTIIVGETGSGKTTQIPQYLKEAGWADGGRVIACTQPRRLAVQAVASRVAEEMGVKVGEE 126 (660)
Q Consensus 48 ~lPi~~~~~~i~~~l~-~~~~vii~apTGsGKT~~ip~~l~~~~~~~~~~~i~v~p~r~la~~~~~~~~~~~~~~~~~~~ 126 (660)
...+..-|.+.+..+. .+++++|+|+.|+||||++-.+.. .....+.+++.++|+-+.+ +++.+..|+..
T Consensus 379 ~~~Ls~eQ~~Av~~i~~~~r~~~v~G~AGTGKTt~l~~~~~-~~e~~G~~V~g~ApTgkAA-----~~L~e~~Gi~a--- 449 (1102)
T PRK13826 379 HARLSDEQKTAIEHVAGPARIAAVVGRAGAGKTTMMKAARE-AWEAAGYRVVGGALAGKAA-----EGLEKEAGIQS--- 449 (1102)
T ss_pred CCCCCHHHHHHHHHHhccCCeEEEEeCCCCCHHHHHHHHHH-HHHHcCCeEEEEcCcHHHH-----HHHHHhhCCCe---
Confidence 4568888888888774 578999999999999988765433 2223456677787774332 33444444321
Q ss_pred EeeeeeccccCCCCCceEEEechHHHHHHH-hcCCCCCCCcEEEEeCCCcCCcChhHHHHHHHHHHHhcCCceEEEeecc
Q 006122 127 VGYTIRFEDFTNKDLTAIKFLTDGVLLREM-MDDPLLTKYSVIMVDEAHERSISTDILLGLLKKIQRCRSDLRLIISSAT 205 (660)
Q Consensus 127 vg~~~~~~~~~~~~~~~I~v~T~~~ll~~l-~~~~~l~~~~~iIiDE~Her~~~~d~ll~~l~~~~~~~~~~kii~~SAT 205 (660)
.|-..++..+ .....+..-++|||||+. ++++..+..+++.+.. .+.|+|++.=+
T Consensus 450 --------------------~TIas~ll~~~~~~~~l~~~~vlVIDEAs--Mv~~~~m~~Ll~~~~~--~garvVLVGD~ 505 (1102)
T PRK13826 450 --------------------RTLSSWELRWNQGRDQLDNKTVFVLDEAG--MVASRQMALFVEAVTR--AGAKLVLVGDP 505 (1102)
T ss_pred --------------------eeHHHHHhhhccCccCCCCCcEEEEECcc--cCCHHHHHHHHHHHHh--cCCEEEEECCH
Confidence 1222221111 112236667899999999 6777777777766542 45778887644
No 186
>KOG1803 consensus DNA helicase [Replication, recombination and repair]
Probab=97.60 E-value=0.00012 Score=78.58 Aligned_cols=62 Identities=23% Similarity=0.395 Sum_probs=42.4
Q ss_pred cHHHHHHHHHHHhcC-CEEEEEcCCCCcHHHHHHHHHHhccccCCCeEEEEeCchHHHHHHHHHH
Q 006122 51 VYKYRTAILYLVETH-ATTIIVGETGSGKTTQIPQYLKEAGWADGGRVIACTQPRRLAVQAVASR 114 (660)
Q Consensus 51 i~~~~~~i~~~l~~~-~~vii~apTGsGKT~~ip~~l~~~~~~~~~~~i~v~p~r~la~~~~~~~ 114 (660)
+...|+++......+ ...+|.||+|+|||+.+-.++... ...+.++++|.|+. ++.....+|
T Consensus 186 ln~SQk~Av~~~~~~k~l~~I~GPPGTGKT~TlvEiI~ql-vk~~k~VLVcaPSn-~AVdNiver 248 (649)
T KOG1803|consen 186 LNSSQKAAVSFAINNKDLLIIHGPPGTGKTRTLVEIISQL-VKQKKRVLVCAPSN-VAVDNIVER 248 (649)
T ss_pred ccHHHHHHHHHHhccCCceEeeCCCCCCceeeHHHHHHHH-HHcCCeEEEEcCch-HHHHHHHHH
Confidence 667788888777666 778999999999995554444443 33456777777775 444544444
No 187
>TIGR01447 recD exodeoxyribonuclease V, alpha subunit. This family describes the exodeoxyribonuclease V alpha subunit, RecD. RecD is part of a RecBCD complex. A related family in the Gram-positive bacteria separates in a phylogenetic tree, has an additional N-terminal extension of about 200 residues, and is not supported as a member of a RecBCD complex by neighboring genes. The related family is consequently described by a different model.
Probab=97.57 E-value=0.00063 Score=76.06 Aligned_cols=137 Identities=19% Similarity=0.219 Sum_probs=73.5
Q ss_pred HHHHHHHHHHhcCCEEEEEcCCCCcHHHHHHHHHHhcc--c-c-CCCeEEEEeCchHHHHHHHHHHHHHHhCCeeeeEEe
Q 006122 53 KYRTAILYLVETHATTIIVGETGSGKTTQIPQYLKEAG--W-A-DGGRVIACTQPRRLAVQAVASRVAEEMGVKVGEEVG 128 (660)
Q Consensus 53 ~~~~~i~~~l~~~~~vii~apTGsGKT~~ip~~l~~~~--~-~-~~~~~i~v~p~r~la~~~~~~~~~~~~~~~~~~~vg 128 (660)
.+|+..+.....+++++|+|+.||||||.+-.++.... . . .+.++++++|+-+.+. .+.+.+..... ....
T Consensus 148 ~~Qk~A~~~al~~~~~vitGgpGTGKTt~v~~ll~~l~~~~~~~~~~~I~l~APTGkAA~-rL~e~~~~~~~-~l~~--- 222 (586)
T TIGR01447 148 NWQKVAVALALKSNFSLITGGPGTGKTTTVARLLLALVKQSPKQGKLRIALAAPTGKAAA-RLAESLRKAVK-NLAA--- 222 (586)
T ss_pred HHHHHHHHHHhhCCeEEEEcCCCCCHHHHHHHHHHHHHHhccccCCCcEEEECCcHHHHH-HHHHHHHhhhc-cccc---
Confidence 46777777777889999999999999987766543321 1 1 1134566677654443 34443332211 0000
Q ss_pred eeeeccccCCCCCceEEEechHHHHHHHhc-------CCCCCCCcEEEEeCCCcCCcChhHHHHHHHHHHHhcCCceEEE
Q 006122 129 YTIRFEDFTNKDLTAIKFLTDGVLLREMMD-------DPLLTKYSVIMVDEAHERSISTDILLGLLKKIQRCRSDLRLII 201 (660)
Q Consensus 129 ~~~~~~~~~~~~~~~I~v~T~~~ll~~l~~-------~~~l~~~~~iIiDE~Her~~~~d~ll~~l~~~~~~~~~~kii~ 201 (660)
. ..... ...+...|-..++..... ......+++|||||+- +++...+..+++. .++..|+|+
T Consensus 223 -~----~~~~~-~~~~~a~TiHrlLg~~~~~~~~~~~~~~~l~~dvlIiDEaS--Mvd~~l~~~ll~a---l~~~~rlIl 291 (586)
T TIGR01447 223 -A----EALIA-ALPSEAVTIHRLLGIKPDTKRFRHHERNPLPLDVLVVDEAS--MVDLPLMAKLLKA---LPPNTKLIL 291 (586)
T ss_pred -c----hhhhh-ccccccchhhhhhcccCCcchhhhcccCCCcccEEEEcccc--cCCHHHHHHHHHh---cCCCCEEEE
Confidence 0 00000 011123343333322111 1113368999999998 5666655555543 456788887
Q ss_pred eecc
Q 006122 202 SSAT 205 (660)
Q Consensus 202 ~SAT 205 (660)
+.=.
T Consensus 292 vGD~ 295 (586)
T TIGR01447 292 LGDK 295 (586)
T ss_pred ECCh
Confidence 7643
No 188
>PRK12727 flagellar biosynthesis regulator FlhF; Provisional
Probab=97.55 E-value=0.00094 Score=72.25 Aligned_cols=129 Identities=20% Similarity=0.275 Sum_probs=71.4
Q ss_pred hcCCEEEEEcCCCCcHHHHHHHHHHhccccC-CCeEE-EEeCchHHHHHHHHHHHHHHhCCeeeeEEeeeeeccccCCCC
Q 006122 63 ETHATTIIVGETGSGKTTQIPQYLKEAGWAD-GGRVI-ACTQPRRLAVQAVASRVAEEMGVKVGEEVGYTIRFEDFTNKD 140 (660)
Q Consensus 63 ~~~~~vii~apTGsGKT~~ip~~l~~~~~~~-~~~~i-~v~p~r~la~~~~~~~~~~~~~~~~~~~vg~~~~~~~~~~~~ 140 (660)
..++++.++||||+||||.+..+........ +.++. +-+-+.+..+....+..++.+++.+.
T Consensus 348 ~~G~vIaLVGPtGvGKTTtaakLAa~la~~~~gkkVaLIdtDtyRigA~EQLk~ya~iLgv~v~---------------- 411 (559)
T PRK12727 348 ERGGVIALVGPTGAGKTTTIAKLAQRFAAQHAPRDVALVTTDTQRVGGREQLHSYGRQLGIAVH---------------- 411 (559)
T ss_pred cCCCEEEEECCCCCCHHHHHHHHHHHHHHhcCCCceEEEecccccccHHHHHHHhhcccCceeE----------------
Confidence 4678999999999999988877665433222 23333 33444455554333333333322110
Q ss_pred CceEEEechHHHHHHHhcCCCCCCCcEEEEeCCCcCCcChhHHHHHHHHHHHhcCCceEEEeecccchHHHHHHh
Q 006122 141 LTAIKFLTDGVLLREMMDDPLLTKYSVIMVDEAHERSISTDILLGLLKKIQRCRSDLRLIISSATIEAKSMSAFF 215 (660)
Q Consensus 141 ~~~I~v~T~~~ll~~l~~~~~l~~~~~iIiDE~Her~~~~d~ll~~l~~~~~~~~~~kii~~SAT~~~~~~~~~~ 215 (660)
...+++.+...+.. +.++++||||.+- ++.....+...+..+........+++++++....++.+.+
T Consensus 412 ----~a~d~~~L~~aL~~---l~~~DLVLIDTaG-~s~~D~~l~eeL~~L~aa~~~a~lLVLpAtss~~Dl~eii 478 (559)
T PRK12727 412 ----EADSAESLLDLLER---LRDYKLVLIDTAG-MGQRDRALAAQLNWLRAARQVTSLLVLPANAHFSDLDEVV 478 (559)
T ss_pred ----ecCcHHHHHHHHHH---hccCCEEEecCCC-cchhhHHHHHHHHHHHHhhcCCcEEEEECCCChhHHHHHH
Confidence 01133344444332 4578999999997 4433333333334443334456788899998655555443
No 189
>PF09848 DUF2075: Uncharacterized conserved protein (DUF2075); InterPro: IPR018647 This domain, found in putative ATP/GTP binding proteins, has no known function. It is found in some proteins described as Schlafen family members, which may have a role in hematopoeitic cell differentiation [].
Probab=97.55 E-value=0.00042 Score=73.27 Aligned_cols=90 Identities=27% Similarity=0.371 Sum_probs=54.4
Q ss_pred CEEEEEcCCCCcHHHHHHHHHHhc-cccCCCeEEEEeCchHHHHHHHHHHHHHHhCCeeeeEEeeeeeccccCCCCCceE
Q 006122 66 ATTIIVGETGSGKTTQIPQYLKEA-GWADGGRVIACTQPRRLAVQAVASRVAEEMGVKVGEEVGYTIRFEDFTNKDLTAI 144 (660)
Q Consensus 66 ~~vii~apTGsGKT~~ip~~l~~~-~~~~~~~~i~v~p~r~la~~~~~~~~~~~~~~~~~~~vg~~~~~~~~~~~~~~~I 144 (660)
++++|.|..|||||.++-.++... ....+...++++....+.. .+.+.+.... ... ....
T Consensus 2 ~v~~I~G~aGTGKTvla~~l~~~l~~~~~~~~~~~l~~n~~l~~-~l~~~l~~~~-----------------~~~-~~~~ 62 (352)
T PF09848_consen 2 QVILITGGAGTGKTVLALNLAKELQNSEEGKKVLYLCGNHPLRN-KLREQLAKKY-----------------NPK-LKKS 62 (352)
T ss_pred eEEEEEecCCcCHHHHHHHHHHHhhccccCCceEEEEecchHHH-HHHHHHhhhc-----------------ccc-hhhh
Confidence 478999999999997776666554 1234455677777776644 2233333222 000 2233
Q ss_pred EEechHHHHHHHh-cCCCCCCCcEEEEeCCC
Q 006122 145 KFLTDGVLLREMM-DDPLLTKYSVIMVDEAH 174 (660)
Q Consensus 145 ~v~T~~~ll~~l~-~~~~l~~~~~iIiDE~H 174 (660)
.+..+..+...+. .......+++|||||||
T Consensus 63 ~~~~~~~~i~~~~~~~~~~~~~DviivDEAq 93 (352)
T PF09848_consen 63 DFRKPTSFINNYSESDKEKNKYDVIIVDEAQ 93 (352)
T ss_pred hhhhhHHHHhhcccccccCCcCCEEEEehhH
Confidence 3445555544433 33447889999999999
No 190
>TIGR02760 TraI_TIGR conjugative transfer relaxase protein TraI. This protein is a component of the relaxosome complex. In the process of conjugative plasmid transfer the realaxosome binds to the plasmid at the oriT (origin of transfer) site. The relaxase protein TraI mediates the single-strand nicking and ATP-dependent unwinding (relaxation, helicase activity) of the plasmid molecule. These two activities reside in separate domains of the protein.
Probab=97.52 E-value=0.016 Score=73.70 Aligned_cols=248 Identities=15% Similarity=0.128 Sum_probs=129.4
Q ss_pred CCCcHHHHHHHHHHHhc--CCEEEEEcCCCCcHHHHHHHHHHhccccCCCeEEEEeCchHHHHHHHHHHHHHHhCCeeee
Q 006122 48 RLPVYKYRTAILYLVET--HATTIIVGETGSGKTTQIPQYLKEAGWADGGRVIACTQPRRLAVQAVASRVAEEMGVKVGE 125 (660)
Q Consensus 48 ~lPi~~~~~~i~~~l~~--~~~vii~apTGsGKT~~ip~~l~~~~~~~~~~~i~v~p~r~la~~~~~~~~~~~~~~~~~~ 125 (660)
.+++..-|.+.+..+.. +++.+|+|+.|+||||.+-.+.... ...+..+++++|+-+. +.. +.+..+.....
T Consensus 427 ~~~Ls~~Q~~Av~~il~s~~~v~ii~G~aGTGKTt~l~~l~~~~-~~~G~~V~~lAPTgrA-A~~----L~e~~g~~A~T 500 (1960)
T TIGR02760 427 EFALSPSNKDAVSTLFTSTKRFIIINGFGGTGSTEIAQLLLHLA-SEQGYEIQIITAGSLS-AQE----LRQKIPRLAST 500 (1960)
T ss_pred cCCCCHHHHHHHHHHHhCCCCeEEEEECCCCCHHHHHHHHHHHH-HhcCCeEEEEeCCHHH-HHH----HHHHhcchhhh
Confidence 35666777777776655 4799999999999998876554332 2345677888888653 333 33333322111
Q ss_pred EEeeeeeccccCCCCCceEEEechHHHHHHHhcCCCCCCCcEEEEeCCCcCCcChhHHHHHHHHHHHhcCCceEEEeecc
Q 006122 126 EVGYTIRFEDFTNKDLTAIKFLTDGVLLREMMDDPLLTKYSVIMVDEAHERSISTDILLGLLKKIQRCRSDLRLIISSAT 205 (660)
Q Consensus 126 ~vg~~~~~~~~~~~~~~~I~v~T~~~ll~~l~~~~~l~~~~~iIiDE~Her~~~~d~ll~~l~~~~~~~~~~kii~~SAT 205 (660)
...+... . .. . ....|...++ ..+..+..-++|||||+- ++++..+..+++.+.. .+.|+|++.=+
T Consensus 501 i~~~l~~---l-~~--~-~~~~tv~~fl---~~~~~l~~~~vlIVDEAs--Ml~~~~~~~Ll~~a~~--~garvVlvGD~ 566 (1960)
T TIGR02760 501 FITWVKN---L-FN--D-DQDHTVQGLL---DKSSPFSNKDIFVVDEAN--KLSNNELLKLIDKAEQ--HNSKLILLNDS 566 (1960)
T ss_pred HHHHHHh---h-cc--c-ccchhHHHhh---cccCCCCCCCEEEEECCC--CCCHHHHHHHHHHHhh--cCCEEEEEcCh
Confidence 0000000 0 00 0 0112222332 122225678999999998 6777777777765533 46788887754
Q ss_pred c------chHHHHHHhhcCCCCCCCcccccCCCCCCeEEEECC-ccccceEEecCCCchhHHHHHHHHHHHHHhcCCCCc
Q 006122 206 I------EAKSMSAFFHARKGRRGLEGVELVPRLEPAILSVEG-RGFNVQIHYVEEPVSDYVQAAVSTVLLIHDKEPPGD 278 (660)
Q Consensus 206 ~------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 278 (660)
- ....|.. +....+. ...+.. ......+........+....+...++.+.. ....
T Consensus 567 ~QL~sV~aG~~f~~-L~~~gv~---------------t~~l~~i~rq~~~v~i~~~~~~~r~~~ia~~y~~L~~--~r~~ 628 (1960)
T TIGR02760 567 AQRQGMSAGSAIDL-LKEGGVT---------------TYAWVDTKQQKASVEISEAVDKLRVDYIASAWLDLTP--DRQN 628 (1960)
T ss_pred hhcCccccchHHHH-HHHCCCc---------------EEEeecccccCcceeeeccCchHHHHHHHHHHHhccc--ccCc
Confidence 3 1122332 2222100 111111 000111112222222333344444444433 4456
Q ss_pred EEEEcCCHHHHHHHHHHHHHHhhhccCC-CCCeEEEEcc-CCCCHHHHhhhcCCCCCC
Q 006122 279 ILVFLTGQDDIDATIQLLTEEARTSKKN-SSGLIILPLY-SGLSRAEQEQVFSPTPRG 334 (660)
Q Consensus 279 iLVF~~~~~~i~~l~~~L~~~~~~~~~~-~~~~~v~~lh-~~l~~~~r~~v~~~f~~g 334 (660)
++|+.++.++...+...++..+...+.- ..+..+..+. ..|+..++... ..|+.|
T Consensus 629 tliv~~t~~dr~~Ln~~iR~~L~~~G~L~~~~~~~~~L~p~~lt~~e~r~~-~~Yr~G 685 (1960)
T TIGR02760 629 SQVLATTHREQQDLTQIIRNALKQEGQLSRQEVTVPTLKPVNLTGIQRRNA-AHYKQG 685 (1960)
T ss_pred eEEEcCCcHHHHHHHHHHHHHHHHcCCcCCCceEEEEeccCCCCHHHHhhH-hhcCCC
Confidence 9999999999999999999887543322 1234444443 35666666533 344443
No 191
>PF13872 AAA_34: P-loop containing NTP hydrolase pore-1
Probab=97.47 E-value=0.00076 Score=67.55 Aligned_cols=139 Identities=21% Similarity=0.187 Sum_probs=82.7
Q ss_pred CCEEEEEcCCCCcHHHHHHHHHHhccccCCCeEEEEeCchHHHHHHHHHHHHHHhCCeeeeEEe-eeeeccccCCCCCce
Q 006122 65 HATTIIVGETGSGKTTQIPQYLKEAGWADGGRVIACTQPRRLAVQAVASRVAEEMGVKVGEEVG-YTIRFEDFTNKDLTA 143 (660)
Q Consensus 65 ~~~vii~apTGsGKT~~ip~~l~~~~~~~~~~~i~v~p~r~la~~~~~~~~~~~~~~~~~~~vg-~~~~~~~~~~~~~~~ 143 (660)
..-.++--.||.||--++..++++.......+.|+++..-.|-.. ++|=.+..|...-.... ........... ...
T Consensus 62 R~Gf~lGDGtGvGKGR~iAgiI~~n~l~Gr~r~vwvS~s~dL~~D--a~RDl~DIG~~~i~v~~l~~~~~~~~~~~-~~G 138 (303)
T PF13872_consen 62 RAGFFLGDGTGVGKGRQIAGIILENWLRGRKRAVWVSVSNDLKYD--AERDLRDIGADNIPVHPLNKFKYGDIIRL-KEG 138 (303)
T ss_pred CcEEEeccCCCcCccchhHHHHHHHHHcCCCceEEEECChhhhhH--HHHHHHHhCCCcccceechhhccCcCCCC-CCC
Confidence 345677778999999888888888766555668999988877666 33323333322111111 11111111122 457
Q ss_pred EEEechHHHHHHHhcCC-----------CC--CCCcEEEEeCCCcCC-cCh-----hHHHHHHHHHHHhcCCceEEEeec
Q 006122 144 IKFLTDGVLLREMMDDP-----------LL--TKYSVIMVDEAHERS-IST-----DILLGLLKKIQRCRSDLRLIISSA 204 (660)
Q Consensus 144 I~v~T~~~ll~~l~~~~-----------~l--~~~~~iIiDE~Her~-~~~-----d~ll~~l~~~~~~~~~~kii~~SA 204 (660)
|+|+|...|...-.... ++ ..-.+||+||+|.-. ... .-.-.....+...-|+.|++.+||
T Consensus 139 vlF~TYs~L~~~~~~~~~~~sRl~ql~~W~g~dfdgvivfDEcH~akn~~~~~~~~sk~g~avl~LQ~~LP~ARvvY~SA 218 (303)
T PF13872_consen 139 VLFSTYSTLISESQSGGKYRSRLDQLVDWCGEDFDGVIVFDECHKAKNLSSGSKKPSKTGIAVLELQNRLPNARVVYASA 218 (303)
T ss_pred ccchhHHHHHhHHhccCCccchHHHHHHHHhcCCCceEEeccchhcCCCCccCccccHHHHHHHHHHHhCCCCcEEEecc
Confidence 99999998877643211 11 223799999999321 111 112223334555668899999999
Q ss_pred cc
Q 006122 205 TI 206 (660)
Q Consensus 205 T~ 206 (660)
|-
T Consensus 219 Tg 220 (303)
T PF13872_consen 219 TG 220 (303)
T ss_pred cc
Confidence 96
No 192
>PRK10875 recD exonuclease V subunit alpha; Provisional
Probab=97.45 E-value=0.00094 Score=74.88 Aligned_cols=137 Identities=18% Similarity=0.204 Sum_probs=72.5
Q ss_pred HHHHHHHHHHhcCCEEEEEcCCCCcHHHHHHHHHHhccc---cCCCeEEEEeCchHHHHHHHHHHHHHHhCCeeeeEEee
Q 006122 53 KYRTAILYLVETHATTIIVGETGSGKTTQIPQYLKEAGW---ADGGRVIACTQPRRLAVQAVASRVAEEMGVKVGEEVGY 129 (660)
Q Consensus 53 ~~~~~i~~~l~~~~~vii~apTGsGKT~~ip~~l~~~~~---~~~~~~i~v~p~r~la~~~~~~~~~~~~~~~~~~~vg~ 129 (660)
..|+........++.++|+|++|+||||.+-.++..... .....+.+++|+.+. +..+.+.+..... .. +.
T Consensus 155 d~Qk~Av~~a~~~~~~vItGgpGTGKTt~v~~ll~~l~~~~~~~~~~i~l~APTgkA-A~rL~e~~~~~~~-~~----~~ 228 (615)
T PRK10875 155 DWQKVAAAVALTRRISVISGGPGTGKTTTVAKLLAALIQLADGERCRIRLAAPTGKA-AARLTESLGKALR-QL----PL 228 (615)
T ss_pred HHHHHHHHHHhcCCeEEEEeCCCCCHHHHHHHHHHHHHHhcCCCCcEEEEECCcHHH-HHHHHHHHHhhhh-cc----cc
Confidence 456666666667889999999999999887665543211 112344555666544 4444444332211 00 00
Q ss_pred eeeccccCCCCCceEEEechHHHHHHHhc-------CCCCCCCcEEEEeCCCcCCcChhHHHHHHHHHHHhcCCceEEEe
Q 006122 130 TIRFEDFTNKDLTAIKFLTDGVLLREMMD-------DPLLTKYSVIMVDEAHERSISTDILLGLLKKIQRCRSDLRLIIS 202 (660)
Q Consensus 130 ~~~~~~~~~~~~~~I~v~T~~~ll~~l~~-------~~~l~~~~~iIiDE~Her~~~~d~ll~~l~~~~~~~~~~kii~~ 202 (660)
. ..... .......|-.+|+..... ......+++|||||+- +++...+..+++. ..++.|+|++
T Consensus 229 ~----~~~~~-~~~~~a~TiHrlLg~~~~~~~~~~~~~~~l~~dvlIvDEaS--Mvd~~lm~~ll~a---l~~~~rlIlv 298 (615)
T PRK10875 229 T----DEQKK-RIPEEASTLHRLLGAQPGSQRLRYHAGNPLHLDVLVVDEAS--MVDLPMMARLIDA---LPPHARVIFL 298 (615)
T ss_pred c----hhhhh-cCCCchHHHHHHhCcCCCccchhhccccCCCCCeEEEChHh--cccHHHHHHHHHh---cccCCEEEEe
Confidence 0 00000 000112333333322111 1123356999999998 5666565555553 4567888887
Q ss_pred ecc
Q 006122 203 SAT 205 (660)
Q Consensus 203 SAT 205 (660)
.=.
T Consensus 299 GD~ 301 (615)
T PRK10875 299 GDR 301 (615)
T ss_pred cch
Confidence 643
No 193
>PRK12724 flagellar biosynthesis regulator FlhF; Provisional
Probab=97.45 E-value=0.0026 Score=67.14 Aligned_cols=123 Identities=24% Similarity=0.215 Sum_probs=72.5
Q ss_pred CCEEEEEcCCCCcHHHHHHHHHHhccccCCCeE-EEEeCchHHHHHHHHHHHHHHhCCeeeeEEeeeeeccccCCCCCce
Q 006122 65 HATTIIVGETGSGKTTQIPQYLKEAGWADGGRV-IACTQPRRLAVQAVASRVAEEMGVKVGEEVGYTIRFEDFTNKDLTA 143 (660)
Q Consensus 65 ~~~vii~apTGsGKT~~ip~~l~~~~~~~~~~~-i~v~p~r~la~~~~~~~~~~~~~~~~~~~vg~~~~~~~~~~~~~~~ 143 (660)
+.+++++||||+||||++..+........+.++ ++-.-+.+.++....++.++..+....
T Consensus 223 ~~vi~lvGptGvGKTTtaaKLA~~~~~~~G~~V~Lit~Dt~R~aA~eQLk~yAe~lgvp~~------------------- 283 (432)
T PRK12724 223 RKVVFFVGPTGSGKTTSIAKLAAKYFLHMGKSVSLYTTDNYRIAAIEQLKRYADTMGMPFY------------------- 283 (432)
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHHHhcCCeEEEecccchhhhHHHHHHHHHHhcCCCee-------------------
Confidence 456889999999999999888765433334333 555666677777666666666554321
Q ss_pred EEEechHHHHHHHhcCCCCCCCcEEEEeCCCcCCcChhHHHHHHHHHHHh----cCCceEEEeecccchHHHH
Q 006122 144 IKFLTDGVLLREMMDDPLLTKYSVIMVDEAHERSISTDILLGLLKKIQRC----RSDLRLIISSATIEAKSMS 212 (660)
Q Consensus 144 I~v~T~~~ll~~l~~~~~l~~~~~iIiDE~Her~~~~d~ll~~l~~~~~~----~~~~kii~~SAT~~~~~~~ 212 (660)
.......+...+. -.++++||||=+- |.....-.+.-+..+... .+.-.++.+|||...+.+.
T Consensus 284 -~~~~~~~l~~~l~----~~~~D~VLIDTaG-r~~rd~~~l~eL~~~~~~~~~~~~~e~~LVLsAt~~~~~~~ 350 (432)
T PRK12724 284 -PVKDIKKFKETLA----RDGSELILIDTAG-YSHRNLEQLERMQSFYSCFGEKDSVENLLVLSSTSSYHHTL 350 (432)
T ss_pred -ehHHHHHHHHHHH----hCCCCEEEEeCCC-CCccCHHHHHHHHHHHHhhcCCCCCeEEEEEeCCCCHHHHH
Confidence 0111233343332 2578999999876 443322333333333332 2335688899999554443
No 194
>PRK06526 transposase; Provisional
Probab=97.45 E-value=0.00079 Score=67.29 Aligned_cols=30 Identities=23% Similarity=0.279 Sum_probs=23.5
Q ss_pred HHHhcCCEEEEEcCCCCcHHHHHHHHHHhc
Q 006122 60 YLVETHATTIIVGETGSGKTTQIPQYLKEA 89 (660)
Q Consensus 60 ~~l~~~~~vii~apTGsGKT~~ip~~l~~~ 89 (660)
+.+..+.++++.||+|+|||+++-.+..+.
T Consensus 93 ~fi~~~~nlll~Gp~GtGKThLa~al~~~a 122 (254)
T PRK06526 93 DFVTGKENVVFLGPPGTGKTHLAIGLGIRA 122 (254)
T ss_pred chhhcCceEEEEeCCCCchHHHHHHHHHHH
Confidence 345678899999999999997776655544
No 195
>PRK06731 flhF flagellar biosynthesis regulator FlhF; Validated
Probab=97.43 E-value=0.0031 Score=63.31 Aligned_cols=129 Identities=18% Similarity=0.273 Sum_probs=71.5
Q ss_pred cCCEEEEEcCCCCcHHHHHHHHHHhccccCCCeE-EEEeCchHHHHHHHHHHHHHHhCCeeeeEEeeeeeccccCCCCCc
Q 006122 64 THATTIIVGETGSGKTTQIPQYLKEAGWADGGRV-IACTQPRRLAVQAVASRVAEEMGVKVGEEVGYTIRFEDFTNKDLT 142 (660)
Q Consensus 64 ~~~~vii~apTGsGKT~~ip~~l~~~~~~~~~~~-i~v~p~r~la~~~~~~~~~~~~~~~~~~~vg~~~~~~~~~~~~~~ 142 (660)
.++.+.+.|++|+|||+.+-.+..... ..+.++ ++.+-+.++++....+..++..+..+
T Consensus 74 ~~~~i~~~G~~g~GKTtl~~~l~~~l~-~~~~~v~~i~~D~~ri~~~~ql~~~~~~~~~~~------------------- 133 (270)
T PRK06731 74 EVQTIALIGPTGVGKTTTLAKMAWQFH-GKKKTVGFITTDHSRIGTVQQLQDYVKTIGFEV------------------- 133 (270)
T ss_pred CCCEEEEECCCCCcHHHHHHHHHHHHH-HcCCeEEEEecCCCCHHHHHHHHHHhhhcCceE-------------------
Confidence 447899999999999987776654432 123333 44444555554433333333332211
Q ss_pred eEEEechHHHHHHHhcCCCCCCCcEEEEeCCCcCCc-ChhHHHHHHHHHHHhcCCceEEEeecccchHHHHHH
Q 006122 143 AIKFLTDGVLLREMMDDPLLTKYSVIMVDEAHERSI-STDILLGLLKKIQRCRSDLRLIISSATIEAKSMSAF 214 (660)
Q Consensus 143 ~I~v~T~~~ll~~l~~~~~l~~~~~iIiDE~Her~~-~~d~ll~~l~~~~~~~~~~kii~~SAT~~~~~~~~~ 214 (660)
+...++..+.+.+..-....++++||||.+= |.. +.+.+..+.+.+....++..++.+|||...++..+.
T Consensus 134 -~~~~~~~~l~~~l~~l~~~~~~D~ViIDt~G-r~~~~~~~l~el~~~~~~~~~~~~~LVl~a~~~~~d~~~~ 204 (270)
T PRK06731 134 -IAVRDEAAMTRALTYFKEEARVDYILIDTAG-KNYRASETVEEMIETMGQVEPDYICLTLSASMKSKDMIEI 204 (270)
T ss_pred -EecCCHHHHHHHHHHHHhcCCCCEEEEECCC-CCcCCHHHHHHHHHHHhhhCCCeEEEEEcCccCHHHHHHH
Confidence 1112444444433211113468999999997 453 444455554444445566667889999855444433
No 196
>smart00382 AAA ATPases associated with a variety of cellular activities. AAA - ATPases associated with a variety of cellular activities. This profile/alignment only detects a fraction of this vast family. The poorly conserved N-terminal helix is missing from the alignment.
Probab=97.39 E-value=0.00095 Score=59.70 Aligned_cols=39 Identities=36% Similarity=0.414 Sum_probs=27.4
Q ss_pred CCEEEEEcCCCCcHHHHHHHHHHhccccCCCeEEEEeCch
Q 006122 65 HATTIIVGETGSGKTTQIPQYLKEAGWADGGRVIACTQPR 104 (660)
Q Consensus 65 ~~~vii~apTGsGKT~~ip~~l~~~~~~~~~~~i~v~p~r 104 (660)
++.+++.||+|||||+++-.++....... ..++++....
T Consensus 2 ~~~~~l~G~~G~GKTtl~~~l~~~~~~~~-~~~~~~~~~~ 40 (148)
T smart00382 2 GEVILIVGPPGSGKTTLARALARELGPPG-GGVIYIDGED 40 (148)
T ss_pred CCEEEEECCCCCcHHHHHHHHHhccCCCC-CCEEEECCEE
Confidence 56799999999999998887776654221 2355555544
No 197
>PRK14721 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=97.39 E-value=0.0026 Score=67.81 Aligned_cols=128 Identities=17% Similarity=0.207 Sum_probs=79.0
Q ss_pred cCCEEEEEcCCCCcHHHHHHHHHHhccccC--CCeEEEEeCchHHHHHHHHHHHHHHhCCeeeeEEeeeeeccccCCCCC
Q 006122 64 THATTIIVGETGSGKTTQIPQYLKEAGWAD--GGRVIACTQPRRLAVQAVASRVAEEMGVKVGEEVGYTIRFEDFTNKDL 141 (660)
Q Consensus 64 ~~~~vii~apTGsGKT~~ip~~l~~~~~~~--~~~~i~v~p~r~la~~~~~~~~~~~~~~~~~~~vg~~~~~~~~~~~~~ 141 (660)
.++++.+.||||+||||.+..+........ ....++...+.++.+......+++.+|..+.
T Consensus 190 ~g~vi~lvGpnG~GKTTtlakLA~~~~~~~~~~~v~~i~~d~~rigalEQL~~~a~ilGvp~~----------------- 252 (420)
T PRK14721 190 QGGVYALIGPTGVGKTTTTAKLAARAVIRHGADKVALLTTDSYRIGGHEQLRIYGKLLGVSVR----------------- 252 (420)
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHHHHhcCCCeEEEEecCCcchhHHHHHHHHHHHcCCcee-----------------
Confidence 467899999999999998886665432111 2334667778788877767677776665321
Q ss_pred ceEEEechHHHHHHHhcCCCCCCCcEEEEeCCCcCCcChhHHHHHHHHHHHhc-CCceEEEeecccchHHHHHHh
Q 006122 142 TAIKFLTDGVLLREMMDDPLLTKYSVIMVDEAHERSISTDILLGLLKKIQRCR-SDLRLIISSATIEAKSMSAFF 215 (660)
Q Consensus 142 ~~I~v~T~~~ll~~l~~~~~l~~~~~iIiDE~Her~~~~d~ll~~l~~~~~~~-~~~kii~~SAT~~~~~~~~~~ 215 (660)
.+-++..+...+. .+.+.++++||.+- |......+...++.+.... +.-.++.+|||...+.+.+..
T Consensus 253 ---~v~~~~dl~~al~---~l~~~d~VLIDTaG-rsqrd~~~~~~l~~l~~~~~~~~~~LVl~at~~~~~~~~~~ 320 (420)
T PRK14721 253 ---SIKDIADLQLMLH---ELRGKHMVLIDTVG-MSQRDQMLAEQIAMLSQCGTQVKHLLLLNATSSGDTLDEVI 320 (420)
T ss_pred ---cCCCHHHHHHHHH---HhcCCCEEEecCCC-CCcchHHHHHHHHHHhccCCCceEEEEEcCCCCHHHHHHHH
Confidence 1112222222222 15678999999975 5544444555555554433 334577899998666555443
No 198
>PRK14723 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=97.35 E-value=0.002 Score=73.12 Aligned_cols=125 Identities=18% Similarity=0.199 Sum_probs=79.5
Q ss_pred CCEEEEEcCCCCcHHHHHHHHHHhccccCCC-eE-EEEeCchHHHHHHHHHHHHHHhCCeeeeEEeeeeeccccCCCCCc
Q 006122 65 HATTIIVGETGSGKTTQIPQYLKEAGWADGG-RV-IACTQPRRLAVQAVASRVAEEMGVKVGEEVGYTIRFEDFTNKDLT 142 (660)
Q Consensus 65 ~~~vii~apTGsGKT~~ip~~l~~~~~~~~~-~~-i~v~p~r~la~~~~~~~~~~~~~~~~~~~vg~~~~~~~~~~~~~~ 142 (660)
++++.++||||+||||.+..+........+. ++ ++-+-+.++++....+.+++.+++.+
T Consensus 185 g~Vi~lVGpnGvGKTTTiaKLA~~~~~~~G~kkV~lit~Dt~RigA~eQL~~~a~~~gvpv------------------- 245 (767)
T PRK14723 185 GGVLALVGPTGVGKTTTTAKLAARCVAREGADQLALLTTDSFRIGALEQLRIYGRILGVPV------------------- 245 (767)
T ss_pred CeEEEEECCCCCcHHHHHHHHHhhHHHHcCCCeEEEecCcccchHHHHHHHHHHHhCCCCc-------------------
Confidence 5688999999999998888776544223332 33 33344567766655565666655422
Q ss_pred eEEEechHHHHHHHhcCCCCCCCcEEEEeCCCcCCcChhHHHHHHHHHHH-hcCCceEEEeecccchHHHHH
Q 006122 143 AIKFLTDGVLLREMMDDPLLTKYSVIMVDEAHERSISTDILLGLLKKIQR-CRSDLRLIISSATIEAKSMSA 213 (660)
Q Consensus 143 ~I~v~T~~~ll~~l~~~~~l~~~~~iIiDE~Her~~~~d~ll~~l~~~~~-~~~~~kii~~SAT~~~~~~~~ 213 (660)
.++.++..+.+.+.. +.++++|+||=+- |+....-+...++.+.. ..+.-.++++|||...+.+.+
T Consensus 246 -~~~~~~~~l~~al~~---~~~~D~VLIDTAG-Rs~~d~~l~eel~~l~~~~~p~e~~LVLsAt~~~~~l~~ 312 (767)
T PRK14723 246 -HAVKDAADLRFALAA---LGDKHLVLIDTVG-MSQRDRNVSEQIAMLCGVGRPVRRLLLLNAASHGDTLNE 312 (767)
T ss_pred -cccCCHHHHHHHHHH---hcCCCEEEEeCCC-CCccCHHHHHHHHHHhccCCCCeEEEEECCCCcHHHHHH
Confidence 112356666555442 5577999999998 66544445555555543 445667889999986665553
No 199
>TIGR03015 pepcterm_ATPase putative secretion ATPase, PEP-CTERM locus subfamily. Members of this protein are marked as probable ATPases by the nucleotide binding P-loop motif GXXGXGKTT, a motif DEAQ similar to the DEAD/H box of helicases, and extensive homology to ATPases of MSHA-type pilus systems and to GspA proteins associated with type II protein secretion systems.
Probab=97.33 E-value=0.0012 Score=66.94 Aligned_cols=28 Identities=39% Similarity=0.574 Sum_probs=22.0
Q ss_pred Hhc-CCEEEEEcCCCCcHHHHHHHHHHhc
Q 006122 62 VET-HATTIIVGETGSGKTTQIPQYLKEA 89 (660)
Q Consensus 62 l~~-~~~vii~apTGsGKT~~ip~~l~~~ 89 (660)
+.. ...+++.||+|+||||++-.+....
T Consensus 39 ~~~~~~~~~l~G~~G~GKTtl~~~l~~~l 67 (269)
T TIGR03015 39 LSQREGFILITGEVGAGKTTLIRNLLKRL 67 (269)
T ss_pred HhcCCCEEEEEcCCCCCHHHHHHHHHHhc
Confidence 444 3479999999999999988776554
No 200
>KOG4439 consensus RNA polymerase II transcription termination factor TTF2/lodestar, DEAD-box superfamily [Transcription; Replication, recombination and repair]
Probab=97.31 E-value=0.0038 Score=68.11 Aligned_cols=91 Identities=18% Similarity=0.237 Sum_probs=71.5
Q ss_pred CCeEEEEccCCCCHHHHhhhcCCCC--CC-CcEEEEeCCCcccccCCCCeEEEEeCCCccceeecCCCCcccceeeecCH
Q 006122 308 SGLIILPLYSGLSRAEQEQVFSPTP--RG-KRKVVISTNIAETSLTLEGIVYVVDSGFSKQRFYNPISDIENLVVAPISK 384 (660)
Q Consensus 308 ~~~~v~~lh~~l~~~~r~~v~~~f~--~g-~~~vlvaT~i~e~Gidip~v~~VId~g~~k~~~~~~~~~~~~l~~~~~s~ 384 (660)
.+..-..+||.+...+|+.+++.|. +| .+-.|++-...+-|+|+-+-+++|-.|+. || |.=.
T Consensus 769 ~g~~y~si~Gqv~vK~Rq~iv~~FN~~k~~~rVmLlSLtAGGVGLNL~GaNHlilvDlH----WN-----------PaLE 833 (901)
T KOG4439|consen 769 GGHIYTSITGQVLVKDRQEIVDEFNQEKGGARVMLLSLTAGGVGLNLIGANHLILVDLH----WN-----------PALE 833 (901)
T ss_pred CCeeeeeecCccchhHHHHHHHHHHhccCCceEEEEEEccCcceeeecccceEEEEecc----cC-----------HHHH
Confidence 3677888999999999999998884 33 55667777888899999999999987762 33 3345
Q ss_pred HhHHHhhcccCCCCCcEEEEccChHHhhh
Q 006122 385 ASARQRAGRAGRVRPGKCYRLYTEEYFVK 413 (660)
Q Consensus 385 ~~~~QR~GRaGR~~~G~~~~l~~~~~~~~ 413 (660)
.++--|+-|.|..++-..|++......+.
T Consensus 834 qQAcDRIYR~GQkK~V~IhR~~~~gTvEq 862 (901)
T KOG4439|consen 834 QQACDRIYRMGQKKDVFIHRLMCKGTVEQ 862 (901)
T ss_pred HHHHHHHHHhcccCceEEEEEEecCcHHH
Confidence 66777888889888889999988776654
No 201
>PRK08181 transposase; Validated
Probab=97.31 E-value=0.0029 Score=63.63 Aligned_cols=118 Identities=16% Similarity=0.170 Sum_probs=62.3
Q ss_pred HHhcCCEEEEEcCCCCcHHHHHHHHHHhccccCCCeEEEEeCchHHHHHHHHHHHHHHhCCeeeeEEeeeeeccccCCCC
Q 006122 61 LVETHATTIIVGETGSGKTTQIPQYLKEAGWADGGRVIACTQPRRLAVQAVASRVAEEMGVKVGEEVGYTIRFEDFTNKD 140 (660)
Q Consensus 61 ~l~~~~~vii~apTGsGKT~~ip~~l~~~~~~~~~~~i~v~p~r~la~~~~~~~~~~~~~~~~~~~vg~~~~~~~~~~~~ 140 (660)
.+..++++++.||+|+|||.++-.+..... ..+..++++. ...+... +.... .
T Consensus 102 ~~~~~~nlll~Gp~GtGKTHLa~Aia~~a~-~~g~~v~f~~-~~~L~~~-----l~~a~-------------------~- 154 (269)
T PRK08181 102 WLAKGANLLLFGPPGGGKSHLAAAIGLALI-ENGWRVLFTR-TTDLVQK-----LQVAR-------------------R- 154 (269)
T ss_pred HHhcCceEEEEecCCCcHHHHHHHHHHHHH-HcCCceeeee-HHHHHHH-----HHHHH-------------------h-
Confidence 456788999999999999977766554442 2344455544 3233222 11110 0
Q ss_pred CceEEEechHHHHHHHhcCCCCCCCcEEEEeCCCcCCcChhHHHHHHHHHHHhcCCceEEEeecccchHHHHHHhhc
Q 006122 141 LTAIKFLTDGVLLREMMDDPLLTKYSVIMVDEAHERSISTDILLGLLKKIQRCRSDLRLIISSATIEAKSMSAFFHA 217 (660)
Q Consensus 141 ~~~I~v~T~~~ll~~l~~~~~l~~~~~iIiDE~Her~~~~d~ll~~l~~~~~~~~~~kii~~SAT~~~~~~~~~~~~ 217 (660)
. .+...+++. +.+++++||||++....+......++..+-..... +-++++.-.+...+...|++
T Consensus 155 ~-----~~~~~~l~~------l~~~dLLIIDDlg~~~~~~~~~~~Lf~lin~R~~~-~s~IiTSN~~~~~w~~~~~D 219 (269)
T PRK08181 155 E-----LQLESAIAK------LDKFDLLILDDLAYVTKDQAETSVLFELISARYER-RSILITANQPFGEWNRVFPD 219 (269)
T ss_pred C-----CcHHHHHHH------HhcCCEEEEeccccccCCHHHHHHHHHHHHHHHhC-CCEEEEcCCCHHHHHHhcCC
Confidence 0 122223333 45688999999994333322222222222222223 33555555566767776654
No 202
>PF12340 DUF3638: Protein of unknown function (DUF3638); InterPro: IPR022099 This domain family is found in eukaryotes, and is approximately 230 amino acids in length. There are two conserved sequence motifs: LLE and NMG.
Probab=97.30 E-value=0.0026 Score=61.45 Aligned_cols=127 Identities=20% Similarity=0.259 Sum_probs=82.0
Q ss_pred HHHHhcCCCcHHHHHHHHHHHhc---CCEEEEEcCCCCcHH-HHHHHHHHhccccCCCeEEEEeCchHHHHHHH---HHH
Q 006122 42 IEKQRQRLPVYKYRTAILYLVET---HATTIIVGETGSGKT-TQIPQYLKEAGWADGGRVIACTQPRRLAVQAV---ASR 114 (660)
Q Consensus 42 ~~~~~~~lPi~~~~~~i~~~l~~---~~~vii~apTGsGKT-~~ip~~l~~~~~~~~~~~i~v~p~r~la~~~~---~~~ 114 (660)
+++...++=+.+.|-++...+.+ +.+.+.+.-+|.||| .++|...+.. .++.+.+.++-|+.|..+.. ..+
T Consensus 15 l~E~e~~iliR~~Q~~ia~~mi~~~~~~n~v~QlnMGeGKTsVI~Pmla~~L--Adg~~LvrviVpk~Ll~q~~~~L~~~ 92 (229)
T PF12340_consen 15 LFEIESNILIRPVQVEIAREMISPPSGKNSVMQLNMGEGKTSVIVPMLALAL--ADGSRLVRVIVPKALLEQMRQMLRSR 92 (229)
T ss_pred HHHHHcCceeeHHHHHHHHHHhCCCCCCCeEeeecccCCccchHHHHHHHHH--cCCCcEEEEEcCHHHHHHHHHHHHHH
Confidence 56777889999999999988875 468999999999999 5567666544 35666777777888877632 333
Q ss_pred HHHHhCCeeeeEEeeeeeccccCCC----------------CCceEEEechHHHHHHHhc--------C-----------
Q 006122 115 VAEEMGVKVGEEVGYTIRFEDFTNK----------------DLTAIKFLTDGVLLREMMD--------D----------- 159 (660)
Q Consensus 115 ~~~~~~~~~~~~vg~~~~~~~~~~~----------------~~~~I~v~T~~~ll~~l~~--------~----------- 159 (660)
++.-.+-.+ |...|+..... ....|+++||+.++..... +
T Consensus 93 lg~l~~r~i-----~~lpFsR~~~~~~~~~~~~~~l~~~~~~~~gill~~PEhilSf~L~~le~l~~~~~~~~~~l~~~q 167 (229)
T PF12340_consen 93 LGGLLNRRI-----YHLPFSRSTPLTPETLEKIRQLLEECMRSGGILLATPEHILSFKLKGLERLQDGKPEEARELLKIQ 167 (229)
T ss_pred HHHHhCCee-----EEecccCCCCCCHHHHHHHHHHHHHHHHcCCEEEeChHHHHHHHHHHHHHHHhcCHHHHHHHHHHH
Confidence 333333222 33333332211 1456999999987653211 1
Q ss_pred CCCCCCcEEEEeCCCc
Q 006122 160 PLLTKYSVIMVDEAHE 175 (660)
Q Consensus 160 ~~l~~~~~iIiDE~He 175 (660)
.++.+...=|+||+|+
T Consensus 168 ~~l~~~~rdilDEsDe 183 (229)
T PF12340_consen 168 KWLDEHSRDILDESDE 183 (229)
T ss_pred HHHHhcCCeEeECchh
Confidence 1244555668888884
No 203
>PF05970 PIF1: PIF1-like helicase; InterPro: IPR010285 This entry represents PIF1 helicase and related proteins. The PIF1 helicase inhibits telomerase activity and is cell cycle regulated [, ].
Probab=97.27 E-value=0.0013 Score=69.71 Aligned_cols=58 Identities=19% Similarity=0.300 Sum_probs=40.9
Q ss_pred HHHHHHHHHHH------hcCCEEEEEcCCCCcHHHHHHHHHHhccccCCCeEEEEeCchHHHHHHH
Q 006122 52 YKYRTAILYLV------ETHATTIIVGETGSGKTTQIPQYLKEAGWADGGRVIACTQPRRLAVQAV 111 (660)
Q Consensus 52 ~~~~~~i~~~l------~~~~~vii~apTGsGKT~~ip~~l~~~~~~~~~~~i~v~p~r~la~~~~ 111 (660)
.+.|+.+++.+ .++.++.|.|+-|+|||+++-.+..... ..++.++++-|..+||..+
T Consensus 3 n~eQ~~~~~~v~~~~~~~~~~~~fv~G~~GtGKs~l~~~i~~~~~--~~~~~~~~~a~tg~AA~~i 66 (364)
T PF05970_consen 3 NEEQRRVFDTVIEAIENEEGLNFFVTGPAGTGKSFLIKAIIDYLR--SRGKKVLVTAPTGIAAFNI 66 (364)
T ss_pred CHHHHHHHHHHHHHHHccCCcEEEEEcCCCCChhHHHHHHHHHhc--cccceEEEecchHHHHHhc
Confidence 45677777666 7788999999999999998877665442 2234455555667777644
No 204
>PRK10416 signal recognition particle-docking protein FtsY; Provisional
Probab=97.26 E-value=0.003 Score=65.30 Aligned_cols=128 Identities=23% Similarity=0.259 Sum_probs=69.0
Q ss_pred CCEEEEEcCCCCcHHHHHHHHHHhccccCCCeEEEE-eCchHHHHHHHHHHHHHHhCCeeeeEEeeeeeccccCCCCCce
Q 006122 65 HATTIIVGETGSGKTTQIPQYLKEAGWADGGRVIAC-TQPRRLAVQAVASRVAEEMGVKVGEEVGYTIRFEDFTNKDLTA 143 (660)
Q Consensus 65 ~~~vii~apTGsGKT~~ip~~l~~~~~~~~~~~i~v-~p~r~la~~~~~~~~~~~~~~~~~~~vg~~~~~~~~~~~~~~~ 143 (660)
+.++.+.||+|+||||.+..+...... .+.++.++ .-+.+.++.......+...+..+-. . . ... .+
T Consensus 114 ~~vi~lvGpnGsGKTTt~~kLA~~l~~-~g~~V~Li~~D~~r~~a~eql~~~a~~~~i~~~~------~-~--~~~-dp- 181 (318)
T PRK10416 114 PFVILVVGVNGVGKTTTIGKLAHKYKA-QGKKVLLAAGDTFRAAAIEQLQVWGERVGVPVIA------Q-K--EGA-DP- 181 (318)
T ss_pred CeEEEEECCCCCcHHHHHHHHHHHHHh-cCCeEEEEecCccchhhHHHHHHHHHHcCceEEE------e-C--CCC-CH-
Confidence 568889999999999888766655432 34444433 4455555443333444444432210 0 0 001 11
Q ss_pred EEEechHHHHHHHhcCCCCCCCcEEEEeCCCcCCcChhHHHHHHHHHHH-------hcCCceEEEeecccchHHH
Q 006122 144 IKFLTDGVLLREMMDDPLLTKYSVIMVDEAHERSISTDILLGLLKKIQR-------CRSDLRLIISSATIEAKSM 211 (660)
Q Consensus 144 I~v~T~~~ll~~l~~~~~l~~~~~iIiDE~Her~~~~d~ll~~l~~~~~-------~~~~~kii~~SAT~~~~~~ 211 (660)
.......+. .....++++||||=+- |....+.+..-++.+.+ ..++-.++.++||...+.+
T Consensus 182 -----a~~v~~~l~-~~~~~~~D~ViIDTaG-r~~~~~~l~~eL~~~~~v~~~~~~~~p~~~~LVl~a~~g~~~~ 249 (318)
T PRK10416 182 -----ASVAFDAIQ-AAKARGIDVLIIDTAG-RLHNKTNLMEELKKIKRVIKKADPDAPHEVLLVLDATTGQNAL 249 (318)
T ss_pred -----HHHHHHHHH-HHHhCCCCEEEEeCCC-CCcCCHHHHHHHHHHHHHHhhhcCCCCceEEEEEECCCChHHH
Confidence 011111111 1124678999999998 65544454444444433 2355678999999844333
No 205
>PRK04296 thymidine kinase; Provisional
Probab=97.24 E-value=0.0039 Score=59.60 Aligned_cols=37 Identities=24% Similarity=0.254 Sum_probs=26.7
Q ss_pred CCEEEEEcCCCCcHHHHHHHHHHhccccCCCeEEEEeC
Q 006122 65 HATTIIVGETGSGKTTQIPQYLKEAGWADGGRVIACTQ 102 (660)
Q Consensus 65 ~~~vii~apTGsGKT~~ip~~l~~~~~~~~~~~i~v~p 102 (660)
+...++.||+|+||||.+-.++..... .+.+++++.|
T Consensus 2 g~i~litG~~GsGKTT~~l~~~~~~~~-~g~~v~i~k~ 38 (190)
T PRK04296 2 AKLEFIYGAMNSGKSTELLQRAYNYEE-RGMKVLVFKP 38 (190)
T ss_pred cEEEEEECCCCCHHHHHHHHHHHHHHH-cCCeEEEEec
Confidence 457899999999999988888776533 3455555543
No 206
>PRK06835 DNA replication protein DnaC; Validated
Probab=97.22 E-value=0.003 Score=65.50 Aligned_cols=37 Identities=32% Similarity=0.346 Sum_probs=25.7
Q ss_pred cCCEEEEEcCCCCcHHHHHHHHHHhccccCCCeEEEEe
Q 006122 64 THATTIIVGETGSGKTTQIPQYLKEAGWADGGRVIACT 101 (660)
Q Consensus 64 ~~~~vii~apTGsGKT~~ip~~l~~~~~~~~~~~i~v~ 101 (660)
.+.++++.||||+|||+++-.+..+. ...+..+++++
T Consensus 182 ~~~~Lll~G~~GtGKThLa~aIa~~l-~~~g~~V~y~t 218 (329)
T PRK06835 182 NNENLLFYGNTGTGKTFLSNCIAKEL-LDRGKSVIYRT 218 (329)
T ss_pred cCCcEEEECCCCCcHHHHHHHHHHHH-HHCCCeEEEEE
Confidence 45789999999999998776555544 23344555554
No 207
>PF05729 NACHT: NACHT domain
Probab=97.20 E-value=0.0015 Score=60.54 Aligned_cols=127 Identities=17% Similarity=0.206 Sum_probs=66.9
Q ss_pred CEEEEEcCCCCcHHHHHHHHHHhccccCC----CeEEEEeCchHHHHHH----HHHHHHHHhCCeeeeEEeeeeeccccC
Q 006122 66 ATTIIVGETGSGKTTQIPQYLKEAGWADG----GRVIACTQPRRLAVQA----VASRVAEEMGVKVGEEVGYTIRFEDFT 137 (660)
Q Consensus 66 ~~vii~apTGsGKT~~ip~~l~~~~~~~~----~~~i~v~p~r~la~~~----~~~~~~~~~~~~~~~~vg~~~~~~~~~ 137 (660)
+.++|.|+.|+|||+++..++........ ...++....+...... +.+.+....... .+
T Consensus 1 r~l~I~G~~G~GKStll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~----~~--------- 67 (166)
T PF05729_consen 1 RVLWISGEPGSGKSTLLRKLAQQLAEEEPPPSKFPYPFFFSLRDISDSNNSRSLADLLFDQLPES----IA--------- 67 (166)
T ss_pred CEEEEECCCCCChHHHHHHHHHHHHhcCcccccceEEEEEeehhhhhccccchHHHHHHHhhccc----hh---------
Confidence 46899999999999888776654432221 1345555555444432 222222211110 00
Q ss_pred CCCCceEEEechHHHHHHHhcCCCCCCCcEEEEeCCCcCCcChh-----HHHHHHHHHHHh--cCCceEEEeecccchHH
Q 006122 138 NKDLTAIKFLTDGVLLREMMDDPLLTKYSVIMVDEAHERSISTD-----ILLGLLKKIQRC--RSDLRLIISSATIEAKS 210 (660)
Q Consensus 138 ~~~~~~I~v~T~~~ll~~l~~~~~l~~~~~iIiDE~Her~~~~d-----~ll~~l~~~~~~--~~~~kii~~SAT~~~~~ 210 (660)
. ... .+...+... .--+||||-++|...... .....+..+... .++.++++.|.+-....
T Consensus 68 -~-~~~-------~~~~~~~~~----~~~llilDglDE~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~liit~r~~~~~~ 134 (166)
T PF05729_consen 68 -P-IEE-------LLQELLEKN----KRVLLILDGLDELEEQDQSQERQRLLDLLSQLLPQALPPGVKLIITSRPRAFPD 134 (166)
T ss_pred -h-hHH-------HHHHHHHcC----CceEEEEechHhcccchhhhHHHHHHHHHHHHhhhccCCCCeEEEEEcCChHHH
Confidence 0 000 111112111 223489999987654332 244455555544 67889888887766666
Q ss_pred HHHHhhcC
Q 006122 211 MSAFFHAR 218 (660)
Q Consensus 211 ~~~~~~~~ 218 (660)
+.+++...
T Consensus 135 ~~~~~~~~ 142 (166)
T PF05729_consen 135 LRRRLKQA 142 (166)
T ss_pred HHHhcCCC
Confidence 66666543
No 208
>PF13173 AAA_14: AAA domain
Probab=97.17 E-value=0.0041 Score=55.29 Aligned_cols=27 Identities=33% Similarity=0.433 Sum_probs=23.0
Q ss_pred cCCEEEEEcCCCCcHHHHHHHHHHhcc
Q 006122 64 THATTIIVGETGSGKTTQIPQYLKEAG 90 (660)
Q Consensus 64 ~~~~vii~apTGsGKT~~ip~~l~~~~ 90 (660)
++++++|.||.|+||||++-+++....
T Consensus 1 n~~~~~l~G~R~vGKTtll~~~~~~~~ 27 (128)
T PF13173_consen 1 NRKIIILTGPRGVGKTTLLKQLAKDLL 27 (128)
T ss_pred CCCeEEEECCCCCCHHHHHHHHHHHhc
Confidence 357899999999999999998886653
No 209
>PF13307 Helicase_C_2: Helicase C-terminal domain; PDB: 4A15_A 2VSF_A 3CRV_A 3CRW_1 2VL7_A.
Probab=97.16 E-value=0.00032 Score=65.56 Aligned_cols=120 Identities=16% Similarity=0.263 Sum_probs=72.7
Q ss_pred CCCCcEEEEcCCHHHHHHHHHHHHHHhhhccCCCCCeEEEEccCCCCHHHHhhhcCCCCCCCcEEEEeCC--CcccccCC
Q 006122 274 EPPGDILVFLTGQDDIDATIQLLTEEARTSKKNSSGLIILPLYSGLSRAEQEQVFSPTPRGKRKVVISTN--IAETSLTL 351 (660)
Q Consensus 274 ~~~~~iLVF~~~~~~i~~l~~~L~~~~~~~~~~~~~~~v~~lh~~l~~~~r~~v~~~f~~g~~~vlvaT~--i~e~Gidi 351 (660)
..+|.+|||+||.+..+.+.+.+.+.... .++.+..- ...+...+++.|+++..-|++++. .+.+|||+
T Consensus 7 ~~~g~~lv~f~Sy~~l~~~~~~~~~~~~~-----~~~~v~~q----~~~~~~~~l~~~~~~~~~il~~v~~g~~~EGiD~ 77 (167)
T PF13307_consen 7 AVPGGVLVFFPSYRRLEKVYERLKERLEE-----KGIPVFVQ----GSKSRDELLEEFKRGEGAILLAVAGGSFSEGIDF 77 (167)
T ss_dssp CCSSEEEEEESSHHHHHHHHTT-TSS-E------ETSCEEES----TCCHHHHHHHHHCCSSSEEEEEETTSCCGSSS--
T ss_pred cCCCCEEEEeCCHHHHHHHHHHHHhhccc-----ccceeeec----CcchHHHHHHHHHhccCeEEEEEecccEEEeecC
Confidence 35588999999999999998887653210 02223222 245677788888889999999998 99999999
Q ss_pred CC--eEEEEeCCCccceeecCC-----------C-CcccceeeecCHHhHHHhhcccCCCCCcEE
Q 006122 352 EG--IVYVVDSGFSKQRFYNPI-----------S-DIENLVVAPISKASARQRAGRAGRVRPGKC 402 (660)
Q Consensus 352 p~--v~~VId~g~~k~~~~~~~-----------~-~~~~l~~~~~s~~~~~QR~GRaGR~~~G~~ 402 (660)
|+ ++.||-.|+.....-|+. . ........+.......|-+||+=|...-.+
T Consensus 78 ~~~~~r~vii~glPfp~~~d~~~~~~~~~~~~~~~~~~~~~~~~~a~~~l~Qa~GR~iR~~~D~g 142 (167)
T PF13307_consen 78 PGDLLRAVIIVGLPFPPPSDPLVQAKREYLDKQGKNPFRDWYLPPAIRKLKQAIGRLIRSEDDYG 142 (167)
T ss_dssp ECESEEEEEEES-----TTCHHHHHHHHHHHHCCTTCHHHHTHHHHHHHHHHHHHCC--STT-EE
T ss_pred CCchhheeeecCCCCCCCCCHHHHHHHHHHHHHhccchhhHhhHHHHHHHhhhcCcceeccCCcE
Confidence 96 778888787543222221 0 001111225556678899999999844433
No 210
>PRK06995 flhF flagellar biosynthesis regulator FlhF; Validated
Probab=97.11 E-value=0.0072 Score=65.53 Aligned_cols=127 Identities=17% Similarity=0.223 Sum_probs=72.8
Q ss_pred cCCEEEEEcCCCCcHHHHHHHHHHhccccCCC-eE-EEEeCchHHHHHHHHHHHHHHhCCeeeeEEeeeeeccccCCCCC
Q 006122 64 THATTIIVGETGSGKTTQIPQYLKEAGWADGG-RV-IACTQPRRLAVQAVASRVAEEMGVKVGEEVGYTIRFEDFTNKDL 141 (660)
Q Consensus 64 ~~~~vii~apTGsGKT~~ip~~l~~~~~~~~~-~~-i~v~p~r~la~~~~~~~~~~~~~~~~~~~vg~~~~~~~~~~~~~ 141 (660)
.+.++.+.||||+||||.+-.+........+. ++ ++-.-+-++.+.+..+.+++.++..+..
T Consensus 255 ~g~Vi~LvGpnGvGKTTTiaKLA~~~~~~~G~~kV~LI~~Dt~RigA~EQLr~~AeilGVpv~~---------------- 318 (484)
T PRK06995 255 RGGVFALMGPTGVGKTTTTAKLAARCVMRHGASKVALLTTDSYRIGGHEQLRIYGKILGVPVHA---------------- 318 (484)
T ss_pred CCcEEEEECCCCccHHHHHHHHHHHHHHhcCCCeEEEEeCCccchhHHHHHHHHHHHhCCCeec----------------
Confidence 45789999999999999888777554333332 33 4444555777776666667766643210
Q ss_pred ceEEEechHHHHHHHhcCCCCCCCcEEEEeCCCcCCcChhHHHHHHHHHHHhc-CCceEEEeecccchHHHHHH
Q 006122 142 TAIKFLTDGVLLREMMDDPLLTKYSVIMVDEAHERSISTDILLGLLKKIQRCR-SDLRLIISSATIEAKSMSAF 214 (660)
Q Consensus 142 ~~I~v~T~~~ll~~l~~~~~l~~~~~iIiDE~Her~~~~d~ll~~l~~~~~~~-~~~kii~~SAT~~~~~~~~~ 214 (660)
.-++..+...+. .+.+.++++||.+- |+.....+...+..+.... +.-.++.++||.....+.+.
T Consensus 319 ----~~~~~Dl~~aL~---~L~d~d~VLIDTaG-r~~~d~~~~e~~~~l~~~~~p~e~~LVLdAt~~~~~l~~i 384 (484)
T PRK06995 319 ----VKDAADLRLALS---ELRNKHIVLIDTIG-MSQRDRMVSEQIAMLHGAGAPVKRLLLLNATSHGDTLNEV 384 (484)
T ss_pred ----cCCchhHHHHHH---hccCCCeEEeCCCC-cChhhHHHHHHHHHHhccCCCCeeEEEEeCCCcHHHHHHH
Confidence 001111111221 25677899999976 5533333333333332221 33367889999866555543
No 211
>KOG0391 consensus SNF2 family DNA-dependent ATPase [General function prediction only]
Probab=97.06 E-value=0.0038 Score=71.47 Aligned_cols=116 Identities=23% Similarity=0.318 Sum_probs=95.1
Q ss_pred CCCCcEEEEcCCHHHHHHHHHHHHHHhhhccCCCCCeEEEEccCCCCHHHHhhhcCCCCCCCc--EEEEeCCCcccccCC
Q 006122 274 EPPGDILVFLTGQDDIDATIQLLTEEARTSKKNSSGLIILPLYSGLSRAEQEQVFSPTPRGKR--KVVISTNIAETSLTL 351 (660)
Q Consensus 274 ~~~~~iLVF~~~~~~i~~l~~~L~~~~~~~~~~~~~~~v~~lh~~l~~~~r~~v~~~f~~g~~--~vlvaT~i~e~Gidi 351 (660)
..+..+|||..-.....-+-..|.-+ ++.-..+.|...-++|+..++.|....+ =.|++|-.-..|||+
T Consensus 1274 ~eghRvLIfTQMtkmLDVLeqFLnyH---------gylY~RLDg~t~vEqRQaLmerFNaD~RIfcfILSTrSggvGiNL 1344 (1958)
T KOG0391|consen 1274 SEGHRVLIFTQMTKMLDVLEQFLNYH---------GYLYVRLDGNTSVEQRQALMERFNADRRIFCFILSTRSGGVGINL 1344 (1958)
T ss_pred hcCceEEehhHHHHHHHHHHHHHhhc---------ceEEEEecCCccHHHHHHHHHHhcCCCceEEEEEeccCCcccccc
Confidence 45677999988777776666666544 8888999999999999999999976543 258899999999999
Q ss_pred CCeEEEEeCCCccceeecCCCCcccceeeecCHHhHHHhhcccCCCCCcEEEEccChHHhhh
Q 006122 352 EGIVYVVDSGFSKQRFYNPISDIENLVVAPISKASARQRAGRAGRVRPGKCYRLYTEEYFVK 413 (660)
Q Consensus 352 p~v~~VId~g~~k~~~~~~~~~~~~l~~~~~s~~~~~QR~GRaGR~~~G~~~~l~~~~~~~~ 413 (660)
-+.+.||. ||...+ |.=-+++.-|.-|.|++++-+.|||+++...+.
T Consensus 1345 tgADTVvF--------YDsDwN-------PtMDaQAQDrChRIGqtRDVHIYRLISe~TIEe 1391 (1958)
T KOG0391|consen 1345 TGADTVVF--------YDSDWN-------PTMDAQAQDRCHRIGQTRDVHIYRLISERTIEE 1391 (1958)
T ss_pred ccCceEEE--------ecCCCC-------chhhhHHHHHHHhhcCccceEEEEeeccchHHH
Confidence 99999997 666654 555677888999999999999999999887765
No 212
>PF13086 AAA_11: AAA domain; PDB: 2XZL_A 2XZO_A 2WJY_A 2WJV_A 2XZP_A 2GK6_A 2GK7_A 2GJK_A.
Probab=97.06 E-value=0.0019 Score=63.71 Aligned_cols=66 Identities=18% Similarity=0.310 Sum_probs=42.8
Q ss_pred cHHHHHHHHHHHhcCCE-EEEEcCCCCcHHHHHHHHHHhcc-------ccCCCeEEEEeCchHHHHHHHHHHHHH
Q 006122 51 VYKYRTAILYLVETHAT-TIIVGETGSGKTTQIPQYLKEAG-------WADGGRVIACTQPRRLAVQAVASRVAE 117 (660)
Q Consensus 51 i~~~~~~i~~~l~~~~~-vii~apTGsGKT~~ip~~l~~~~-------~~~~~~~i~v~p~r~la~~~~~~~~~~ 117 (660)
+.+.|.+++..+..... .+|.||+|||||+.+..++.... ...+.++++++++. .+...+.+++.+
T Consensus 2 ln~~Q~~Ai~~~~~~~~~~~i~GpPGTGKT~~l~~~i~~~~~~~~~~~~~~~~~il~~~~sN-~avd~~~~~l~~ 75 (236)
T PF13086_consen 2 LNESQREAIQSALSSNGITLIQGPPGTGKTTTLASIIAQLLQRFKSRSADRGKKILVVSPSN-AAVDNILERLKK 75 (236)
T ss_dssp --HHHHHHHHHHCTSSE-EEEE-STTSSHHHHHHHHHHHH-------HCCCSS-EEEEESSH-HHHHHHHHHHHC
T ss_pred CCHHHHHHHHHHHcCCCCEEEECCCCCChHHHHHHHHHHhccchhhhhhhccccceeecCCc-hhHHHHHHHHHh
Confidence 35677777887777776 99999999999977776665541 33455566666664 455556665555
No 213
>PRK14956 DNA polymerase III subunits gamma and tau; Provisional
Probab=97.05 E-value=0.0032 Score=67.82 Aligned_cols=47 Identities=28% Similarity=0.433 Sum_probs=29.8
Q ss_pred CCCCCCCcEEEEeCCCcCCcChhHHHHHHHHHHHhcCCceEEEeecccchH
Q 006122 159 DPLLTKYSVIMVDEAHERSISTDILLGLLKKIQRCRSDLRLIISSATIEAK 209 (660)
Q Consensus 159 ~~~l~~~~~iIiDE~Her~~~~d~ll~~l~~~~~~~~~~kii~~SAT~~~~ 209 (660)
.+.-..+.++|||||| .+..+....+++.+... ...++++-||-+..
T Consensus 116 ~p~~g~~KV~IIDEah--~Ls~~A~NALLKtLEEP--p~~viFILaTte~~ 162 (484)
T PRK14956 116 APMGGKYKVYIIDEVH--MLTDQSFNALLKTLEEP--PAHIVFILATTEFH 162 (484)
T ss_pred hhhcCCCEEEEEechh--hcCHHHHHHHHHHhhcC--CCceEEEeecCChh
Confidence 3344578999999999 34566777777776443 34455555554433
No 214
>TIGR00064 ftsY signal recognition particle-docking protein FtsY. There is a weak division between FtsY and SRP54; both are GTPases. In E.coli, ftsY is an essential gene located in an operon with cell division genes ftsE and ftsX, but its apparent function is as the signal recognition particle docking protein.
Probab=97.05 E-value=0.0086 Score=60.57 Aligned_cols=127 Identities=24% Similarity=0.298 Sum_probs=69.0
Q ss_pred CCEEEEEcCCCCcHHHHHHHHHHhccccCCCeEE-EEeCchHHHHHHHHHHHHHHhCCeeeeEEeeeeeccccCCCCCce
Q 006122 65 HATTIIVGETGSGKTTQIPQYLKEAGWADGGRVI-ACTQPRRLAVQAVASRVAEEMGVKVGEEVGYTIRFEDFTNKDLTA 143 (660)
Q Consensus 65 ~~~vii~apTGsGKT~~ip~~l~~~~~~~~~~~i-~v~p~r~la~~~~~~~~~~~~~~~~~~~vg~~~~~~~~~~~~~~~ 143 (660)
.++++++||+|+||||.+..+..... ..+.++. +-+-+.+.+++...+..++..+..+- ... . .. +
T Consensus 72 ~~vi~l~G~~G~GKTTt~akLA~~l~-~~g~~V~li~~D~~r~~a~~ql~~~~~~~~i~~~--~~~-----~--~~-d-- 138 (272)
T TIGR00064 72 PNVILFVGVNGVGKTTTIAKLANKLK-KQGKSVLLAAGDTFRAAAIEQLEEWAKRLGVDVI--KQK-----E--GA-D-- 138 (272)
T ss_pred CeEEEEECCCCCcHHHHHHHHHHHHH-hcCCEEEEEeCCCCCHHHHHHHHHHHHhCCeEEE--eCC-----C--CC-C--
Confidence 35788899999999988776655442 2344443 33445566666555555555553211 000 0 01 1
Q ss_pred EEEechHH-HHHHHhcCCCCCCCcEEEEeCCCcCCcChhHHHHHHHHHHH-hc------CCceEEEeecccchHHH
Q 006122 144 IKFLTDGV-LLREMMDDPLLTKYSVIMVDEAHERSISTDILLGLLKKIQR-CR------SDLRLIISSATIEAKSM 211 (660)
Q Consensus 144 I~v~T~~~-ll~~l~~~~~l~~~~~iIiDE~Her~~~~d~ll~~l~~~~~-~~------~~~kii~~SAT~~~~~~ 211 (660)
|.. ..+.+. .....++++||||=+- |......+..-++.+.. .. ++-.++.++||...+.+
T Consensus 139 -----p~~~~~~~l~-~~~~~~~D~ViIDT~G-~~~~d~~~~~el~~~~~~~~~~~~~~~~~~~LVl~a~~~~~~~ 207 (272)
T TIGR00064 139 -----PAAVAFDAIQ-KAKARNIDVVLIDTAG-RLQNKVNLMDELKKIKRVIKKVDKDAPDEVLLVLDATTGQNAL 207 (272)
T ss_pred -----HHHHHHHHHH-HHHHCCCCEEEEeCCC-CCcchHHHHHHHHHHHHHHhcccCCCCceEEEEEECCCCHHHH
Confidence 111 111111 1113578999999998 55433333333443332 22 67778999999854433
No 215
>PRK07952 DNA replication protein DnaC; Validated
Probab=97.02 E-value=0.022 Score=56.52 Aligned_cols=115 Identities=19% Similarity=0.253 Sum_probs=64.5
Q ss_pred CEEEEEcCCCCcHHHHHHHHHHhccccCCCeEEEEeCchHHHHHHHHHHHHHHhCCeeeeEEeeeeeccccCCCCCceEE
Q 006122 66 ATTIIVGETGSGKTTQIPQYLKEAGWADGGRVIACTQPRRLAVQAVASRVAEEMGVKVGEEVGYTIRFEDFTNKDLTAIK 145 (660)
Q Consensus 66 ~~vii~apTGsGKT~~ip~~l~~~~~~~~~~~i~v~p~r~la~~~~~~~~~~~~~~~~~~~vg~~~~~~~~~~~~~~~I~ 145 (660)
..+++.|++|+|||+++-.+..... ..+..+++++ ...+ ...+...+. .. .
T Consensus 100 ~~~~l~G~~GtGKThLa~aia~~l~-~~g~~v~~it-~~~l-----~~~l~~~~~-----------------~~-~---- 150 (244)
T PRK07952 100 ASFIFSGKPGTGKNHLAAAICNELL-LRGKSVLIIT-VADI-----MSAMKDTFS-----------------NS-E---- 150 (244)
T ss_pred ceEEEECCCCCCHHHHHHHHHHHHH-hcCCeEEEEE-HHHH-----HHHHHHHHh-----------------hc-c----
Confidence 5799999999999987776665543 2344455543 2222 222221110 00 0
Q ss_pred EechHHHHHHHhcCCCCCCCcEEEEeCCCcCCcChhHHHHHHHHHHHhc-CCceEEEeecccchHHHHHHhhc
Q 006122 146 FLTDGVLLREMMDDPLLTKYSVIMVDEAHERSISTDILLGLLKKIQRCR-SDLRLIISSATIEAKSMSAFFHA 217 (660)
Q Consensus 146 v~T~~~ll~~l~~~~~l~~~~~iIiDE~Her~~~~d~ll~~l~~~~~~~-~~~kii~~SAT~~~~~~~~~~~~ 217 (660)
.+...+++. +.+++++||||++... .++.-..++..+...+ .+.+-+++|.-++.+.+.+.+++
T Consensus 151 -~~~~~~l~~------l~~~dlLvIDDig~~~-~s~~~~~~l~~Ii~~Ry~~~~~tiitSNl~~~~l~~~~g~ 215 (244)
T PRK07952 151 -TSEEQLLND------LSNVDLLVIDEIGVQT-ESRYEKVIINQIVDRRSSSKRPTGMLTNSNMEEMTKLLGE 215 (244)
T ss_pred -ccHHHHHHH------hccCCEEEEeCCCCCC-CCHHHHHHHHHHHHHHHhCCCCEEEeCCCCHHHHHHHhCh
Confidence 123344443 4578999999999433 4555555555554433 22344555556677777777654
No 216
>PRK08727 hypothetical protein; Validated
Probab=96.99 E-value=0.0051 Score=60.89 Aligned_cols=36 Identities=19% Similarity=0.126 Sum_probs=24.1
Q ss_pred CCEEEEEcCCCCcHHHHHHHHHHhccccCCCeEEEEe
Q 006122 65 HATTIIVGETGSGKTTQIPQYLKEAGWADGGRVIACT 101 (660)
Q Consensus 65 ~~~vii~apTGsGKT~~ip~~l~~~~~~~~~~~i~v~ 101 (660)
.+.+++.||+|+|||.++-.+.... ...+.+++++.
T Consensus 41 ~~~l~l~G~~G~GKThL~~a~~~~~-~~~~~~~~y~~ 76 (233)
T PRK08727 41 SDWLYLSGPAGTGKTHLALALCAAA-EQAGRSSAYLP 76 (233)
T ss_pred CCeEEEECCCCCCHHHHHHHHHHHH-HHcCCcEEEEe
Confidence 3569999999999997776555443 22344455554
No 217
>TIGR01425 SRP54_euk signal recognition particle protein SRP54. This model represents examples from the eukaryotic cytosol of the signal recognition particle protein component, SRP54. This GTP-binding protein is a component of the eukaryotic signal recognition particle, along with several other protein subunits and a 7S RNA. Some species, including Arabidopsis, have several closely related forms. The extreme C-terminal region is glycine-rich and lower in complexity, poorly conserved between species, and excluded from this model.
Probab=96.98 E-value=0.0069 Score=64.61 Aligned_cols=131 Identities=18% Similarity=0.243 Sum_probs=70.9
Q ss_pred CEEEEEcCCCCcHHHHHHHHHHhccccCCCe-EEEEeCchHHHHHHHHHHHHHHhCCeeeeEEeeeeeccccCCCCCceE
Q 006122 66 ATTIIVGETGSGKTTQIPQYLKEAGWADGGR-VIACTQPRRLAVQAVASRVAEEMGVKVGEEVGYTIRFEDFTNKDLTAI 144 (660)
Q Consensus 66 ~~vii~apTGsGKT~~ip~~l~~~~~~~~~~-~i~v~p~r~la~~~~~~~~~~~~~~~~~~~vg~~~~~~~~~~~~~~~I 144 (660)
.++.++|++|+||||.+..+..... ..+.+ .++.+-+.+.++....+..++..+..+... + .. .
T Consensus 101 ~vi~lvG~~GvGKTTtaaKLA~~l~-~~G~kV~lV~~D~~R~aA~eQLk~~a~~~~vp~~~~--~--------~~--~-- 165 (429)
T TIGR01425 101 NVIMFVGLQGSGKTTTCTKLAYYYQ-RKGFKPCLVCADTFRAGAFDQLKQNATKARIPFYGS--Y--------TE--S-- 165 (429)
T ss_pred eEEEEECCCCCCHHHHHHHHHHHHH-HCCCCEEEEcCcccchhHHHHHHHHhhccCCeEEee--c--------CC--C--
Confidence 4788999999999988776665432 22333 344455656666655554555444332110 0 00 0
Q ss_pred EEechHHHHH-HHhcCCCCCCCcEEEEeCCCcCCcChhHHHHHHHHHH-HhcCCceEEEeeccc--chHHHHHHhh
Q 006122 145 KFLTDGVLLR-EMMDDPLLTKYSVIMVDEAHERSISTDILLGLLKKIQ-RCRSDLRLIISSATI--EAKSMSAFFH 216 (660)
Q Consensus 145 ~v~T~~~ll~-~l~~~~~l~~~~~iIiDE~Her~~~~d~ll~~l~~~~-~~~~~~kii~~SAT~--~~~~~~~~~~ 216 (660)
.|..+.. .+.. ..-..+++||||=+- |....+-+..-++.+. ...++-.++.++||. +....++-|.
T Consensus 166 ---dp~~i~~~~l~~-~~~~~~DvViIDTaG-r~~~d~~lm~El~~i~~~~~p~e~lLVlda~~Gq~a~~~a~~F~ 236 (429)
T TIGR01425 166 ---DPVKIASEGVEK-FKKENFDIIIVDTSG-RHKQEDSLFEEMLQVAEAIQPDNIIFVMDGSIGQAAEAQAKAFK 236 (429)
T ss_pred ---CHHHHHHHHHHH-HHhCCCCEEEEECCC-CCcchHHHHHHHHHHhhhcCCcEEEEEeccccChhHHHHHHHHH
Confidence 1111111 1110 001468999999998 5544333444444443 345677788899997 3333445554
No 218
>smart00488 DEXDc2 DEAD-like helicases superfamily.
Probab=96.94 E-value=0.0024 Score=65.31 Aligned_cols=58 Identities=14% Similarity=0.139 Sum_probs=39.5
Q ss_pred HHHHHH----HHHHHhcCCEEEEEcCCCCcHH--HHHHHHHHhccccC---CCeEEEEeCchHHHHH
Q 006122 52 YKYRTA----ILYLVETHATTIIVGETGSGKT--TQIPQYLKEAGWAD---GGRVIACTQPRRLAVQ 109 (660)
Q Consensus 52 ~~~~~~----i~~~l~~~~~vii~apTGsGKT--~~ip~~l~~~~~~~---~~~~i~v~p~r~la~~ 109 (660)
++.|.+ +.+.+.+++++++.||||+||| +++|.+.+...... +.++++++.+..+..+
T Consensus 10 r~~Q~~~m~~v~~~~~~~~~~~~eapTGtGKTl~~L~~al~~~~~~~~~~~~~kvi~~t~T~~~~~q 76 (289)
T smart00488 10 YPIQYEFMEELKRVLDRGKIGILESPTGTGKTLSLLCLTLTWLRSFPERIQKIKLIYLSRTVSEIEK 76 (289)
T ss_pred CHHHHHHHHHHHHHHHcCCcEEEECCCCcchhHHHHHHHHHHHHhCcccccccceeEEeccHHHHHH
Confidence 666666 6677788999999999999999 55554332221111 2378899988776444
No 219
>smart00489 DEXDc3 DEAD-like helicases superfamily.
Probab=96.94 E-value=0.0024 Score=65.31 Aligned_cols=58 Identities=14% Similarity=0.139 Sum_probs=39.5
Q ss_pred HHHHHH----HHHHHhcCCEEEEEcCCCCcHH--HHHHHHHHhccccC---CCeEEEEeCchHHHHH
Q 006122 52 YKYRTA----ILYLVETHATTIIVGETGSGKT--TQIPQYLKEAGWAD---GGRVIACTQPRRLAVQ 109 (660)
Q Consensus 52 ~~~~~~----i~~~l~~~~~vii~apTGsGKT--~~ip~~l~~~~~~~---~~~~i~v~p~r~la~~ 109 (660)
++.|.+ +.+.+.+++++++.||||+||| +++|.+.+...... +.++++++.+..+..+
T Consensus 10 r~~Q~~~m~~v~~~~~~~~~~~~eapTGtGKTl~~L~~al~~~~~~~~~~~~~kvi~~t~T~~~~~q 76 (289)
T smart00489 10 YPIQYEFMEELKRVLDRGKIGILESPTGTGKTLSLLCLTLTWLRSFPERIQKIKLIYLSRTVSEIEK 76 (289)
T ss_pred CHHHHHHHHHHHHHHHcCCcEEEECCCCcchhHHHHHHHHHHHHhCcccccccceeEEeccHHHHHH
Confidence 666666 6677788999999999999999 55554332221111 2378899988776444
No 220
>PRK00771 signal recognition particle protein Srp54; Provisional
Probab=96.91 E-value=0.017 Score=62.11 Aligned_cols=121 Identities=27% Similarity=0.308 Sum_probs=66.3
Q ss_pred CCEEEEEcCCCCcHHHHHHHHHHhccccCCCeE-EEEeCchHHHHHHHHHHHHHHhCCeeeeEEeeeeeccccCCCCCce
Q 006122 65 HATTIIVGETGSGKTTQIPQYLKEAGWADGGRV-IACTQPRRLAVQAVASRVAEEMGVKVGEEVGYTIRFEDFTNKDLTA 143 (660)
Q Consensus 65 ~~~vii~apTGsGKT~~ip~~l~~~~~~~~~~~-i~v~p~r~la~~~~~~~~~~~~~~~~~~~vg~~~~~~~~~~~~~~~ 143 (660)
..+++++|++|+||||.+..+..... ..+.++ ++.+-+.+.++....+.++...+..+. +. . . ..
T Consensus 95 p~vI~lvG~~GsGKTTtaakLA~~L~-~~g~kV~lV~~D~~R~aa~eQL~~la~~~gvp~~---~~------~--~-~~- 160 (437)
T PRK00771 95 PQTIMLVGLQGSGKTTTAAKLARYFK-KKGLKVGLVAADTYRPAAYDQLKQLAEKIGVPFY---GD------P--D-NK- 160 (437)
T ss_pred CeEEEEECCCCCcHHHHHHHHHHHHH-HcCCeEEEecCCCCCHHHHHHHHHHHHHcCCcEE---ec------C--C-cc-
Confidence 34788999999999988776655442 233333 455555566665555555655554321 10 0 0 00
Q ss_pred EEEechHH-HHHHHhcCCCCCCCcEEEEeCCCcCCcChhHHHHHHHHHH-HhcCCceEEEeecccc
Q 006122 144 IKFLTDGV-LLREMMDDPLLTKYSVIMVDEAHERSISTDILLGLLKKIQ-RCRSDLRLIISSATIE 207 (660)
Q Consensus 144 I~v~T~~~-ll~~l~~~~~l~~~~~iIiDE~Her~~~~d~ll~~l~~~~-~~~~~~kii~~SAT~~ 207 (660)
.+.. +.+.+.. +...++||||.+- |....+-++.-++.+. ...++.-++.++||..
T Consensus 161 ----d~~~i~~~al~~---~~~~DvVIIDTAG-r~~~d~~lm~El~~l~~~~~pdevlLVvda~~g 218 (437)
T PRK00771 161 ----DAVEIAKEGLEK---FKKADVIIVDTAG-RHALEEDLIEEMKEIKEAVKPDEVLLVIDATIG 218 (437)
T ss_pred ----CHHHHHHHHHHH---hhcCCEEEEECCC-cccchHHHHHHHHHHHHHhcccceeEEEecccc
Confidence 1222 2222221 2235899999997 4333333333344433 3456777888999884
No 221
>PRK12377 putative replication protein; Provisional
Probab=96.91 E-value=0.037 Score=54.96 Aligned_cols=37 Identities=24% Similarity=0.291 Sum_probs=25.1
Q ss_pred cCCEEEEEcCCCCcHHHHHHHHHHhccccCCCeEEEEe
Q 006122 64 THATTIIVGETGSGKTTQIPQYLKEAGWADGGRVIACT 101 (660)
Q Consensus 64 ~~~~vii~apTGsGKT~~ip~~l~~~~~~~~~~~i~v~ 101 (660)
....+++.||+|+|||+++-.+..... ..+..+++++
T Consensus 100 ~~~~l~l~G~~GtGKThLa~AIa~~l~-~~g~~v~~i~ 136 (248)
T PRK12377 100 GCTNFVFSGKPGTGKNHLAAAIGNRLL-AKGRSVIVVT 136 (248)
T ss_pred cCCeEEEECCCCCCHHHHHHHHHHHHH-HcCCCeEEEE
Confidence 346899999999999987766655543 2344445444
No 222
>PRK07003 DNA polymerase III subunits gamma and tau; Validated
Probab=96.89 E-value=0.0078 Score=67.78 Aligned_cols=50 Identities=22% Similarity=0.498 Sum_probs=31.9
Q ss_pred HHHHHhcCCCCCCCcEEEEeCCCcCCcChhHHHHHHHHHHHhcCCceEEEee
Q 006122 152 LLREMMDDPLLTKYSVIMVDEAHERSISTDILLGLLKKIQRCRSDLRLIISS 203 (660)
Q Consensus 152 ll~~l~~~~~l~~~~~iIiDE~Her~~~~d~ll~~l~~~~~~~~~~kii~~S 203 (660)
+++.....+.-.+++++||||+|. +..+....++|.+..-.++.++|+.+
T Consensus 107 LIe~a~~~P~~gr~KVIIIDEah~--LT~~A~NALLKtLEEPP~~v~FILaT 156 (830)
T PRK07003 107 LLERAVYAPVDARFKVYMIDEVHM--LTNHAFNAMLKTLEEPPPHVKFILAT 156 (830)
T ss_pred HHHHHHhccccCCceEEEEeChhh--CCHHHHHHHHHHHHhcCCCeEEEEEE
Confidence 334333344456789999999993 44556677777766555556665544
No 223
>PRK10867 signal recognition particle protein; Provisional
Probab=96.89 E-value=0.01 Score=63.77 Aligned_cols=123 Identities=23% Similarity=0.262 Sum_probs=69.7
Q ss_pred CEEEEEcCCCCcHHHHHHHHHHhccccCCC-eEEEEeCchHHHHHHHHHHHHHHhCCeeeeEEeeeeeccccCCCCCceE
Q 006122 66 ATTIIVGETGSGKTTQIPQYLKEAGWADGG-RVIACTQPRRLAVQAVASRVAEEMGVKVGEEVGYTIRFEDFTNKDLTAI 144 (660)
Q Consensus 66 ~~vii~apTGsGKT~~ip~~l~~~~~~~~~-~~i~v~p~r~la~~~~~~~~~~~~~~~~~~~vg~~~~~~~~~~~~~~~I 144 (660)
.+++++|++|+||||.+..+........+. ..++-+-+++.++....+.+++..++.+... + . .
T Consensus 101 ~vI~~vG~~GsGKTTtaakLA~~l~~~~G~kV~lV~~D~~R~aa~eQL~~~a~~~gv~v~~~-~----------~-~--- 165 (433)
T PRK10867 101 TVIMMVGLQGAGKTTTAGKLAKYLKKKKKKKVLLVAADVYRPAAIEQLKTLGEQIGVPVFPS-G----------D-G--- 165 (433)
T ss_pred EEEEEECCCCCcHHHHHHHHHHHHHHhcCCcEEEEEccccchHHHHHHHHHHhhcCCeEEec-C----------C-C---
Confidence 468889999999998877666544332133 3466677777777655555566555442110 0 0 0
Q ss_pred EEechHHHHHHHhcCCCCCCCcEEEEeCCCcCCcChhHHHHHHHHHHH-hcCCceEEEeeccc
Q 006122 145 KFLTDGVLLREMMDDPLLTKYSVIMVDEAHERSISTDILLGLLKKIQR-CRSDLRLIISSATI 206 (660)
Q Consensus 145 ~v~T~~~ll~~l~~~~~l~~~~~iIiDE~Her~~~~d~ll~~l~~~~~-~~~~~kii~~SAT~ 206 (660)
..|..+...........++++||||=+= |....+.+...+..+.. ..++--++.++|+.
T Consensus 166 --~dp~~i~~~a~~~a~~~~~DvVIIDTaG-rl~~d~~lm~eL~~i~~~v~p~evllVlda~~ 225 (433)
T PRK10867 166 --QDPVDIAKAALEEAKENGYDVVIVDTAG-RLHIDEELMDELKAIKAAVNPDEILLVVDAMT 225 (433)
T ss_pred --CCHHHHHHHHHHHHHhcCCCEEEEeCCC-CcccCHHHHHHHHHHHHhhCCCeEEEEEeccc
Confidence 1233333322211123568999999997 44333333343344333 34555577888887
No 224
>PRK08116 hypothetical protein; Validated
Probab=96.84 E-value=0.03 Score=56.59 Aligned_cols=36 Identities=25% Similarity=0.261 Sum_probs=23.9
Q ss_pred CCEEEEEcCCCCcHHHHHHHHHHhccccCCCeEEEEe
Q 006122 65 HATTIIVGETGSGKTTQIPQYLKEAGWADGGRVIACT 101 (660)
Q Consensus 65 ~~~vii~apTGsGKT~~ip~~l~~~~~~~~~~~i~v~ 101 (660)
+..+++.|++|+|||+++-.+..+.. ..+..++++.
T Consensus 114 ~~gl~l~G~~GtGKThLa~aia~~l~-~~~~~v~~~~ 149 (268)
T PRK08116 114 NVGLLLWGSVGTGKTYLAACIANELI-EKGVPVIFVN 149 (268)
T ss_pred CceEEEECCCCCCHHHHHHHHHHHHH-HcCCeEEEEE
Confidence 34599999999999987766555442 2244445444
No 225
>TIGR03499 FlhF flagellar biosynthetic protein FlhF.
Probab=96.80 E-value=0.0065 Score=61.91 Aligned_cols=86 Identities=24% Similarity=0.307 Sum_probs=50.0
Q ss_pred CCEEEEEcCCCCcHHHHHHHHHHhccccCC-CeE-EEEeCchHHHHHHHHHHHHHHhCCeeeeEEeeeeeccccCCCCCc
Q 006122 65 HATTIIVGETGSGKTTQIPQYLKEAGWADG-GRV-IACTQPRRLAVQAVASRVAEEMGVKVGEEVGYTIRFEDFTNKDLT 142 (660)
Q Consensus 65 ~~~vii~apTGsGKT~~ip~~l~~~~~~~~-~~~-i~v~p~r~la~~~~~~~~~~~~~~~~~~~vg~~~~~~~~~~~~~~ 142 (660)
+.+++++||||+||||.+..+........+ .++ ++-+-+.+..+.......++.+++.+.
T Consensus 194 ~~vi~~vGptGvGKTTt~~kLa~~~~~~~g~~~V~li~~D~~r~~a~eql~~~~~~~~~p~~------------------ 255 (282)
T TIGR03499 194 GGVIALVGPTGVGKTTTLAKLAARFVLEHGNKKVALITTDTYRIGAVEQLKTYAKILGVPVK------------------ 255 (282)
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHHHHcCCCeEEEEECCccchhHHHHHHHHHHHhCCcee------------------
Confidence 458899999999999888777665533212 333 444455455555444444544443221
Q ss_pred eEEEechHHHHHHHhcCCCCCCCcEEEEeCC
Q 006122 143 AIKFLTDGVLLREMMDDPLLTKYSVIMVDEA 173 (660)
Q Consensus 143 ~I~v~T~~~ll~~l~~~~~l~~~~~iIiDE~ 173 (660)
...++..+...+.. +.++++|+||.+
T Consensus 256 --~~~~~~~l~~~l~~---~~~~d~vliDt~ 281 (282)
T TIGR03499 256 --VARDPKELRKALDR---LRDKDLILIDTA 281 (282)
T ss_pred --ccCCHHHHHHHHHH---ccCCCEEEEeCC
Confidence 11234444444332 356899999975
No 226
>KOG2340 consensus Uncharacterized conserved protein [Function unknown]
Probab=96.78 E-value=0.027 Score=59.73 Aligned_cols=111 Identities=17% Similarity=0.187 Sum_probs=72.5
Q ss_pred CCCcEEEEcCCHHHHHHHHHHHHHHhhhccCCCCCeEEEEcc--CCCCHHHHhhhcCCCCCCCcEEEEeCCCc--ccccC
Q 006122 275 PPGDILVFLTGQDDIDATIQLLTEEARTSKKNSSGLIILPLY--SGLSRAEQEQVFSPTPRGKRKVVISTNIA--ETSLT 350 (660)
Q Consensus 275 ~~~~iLVF~~~~~~i~~l~~~L~~~~~~~~~~~~~~~v~~lh--~~l~~~~r~~v~~~f~~g~~~vlvaT~i~--e~Gid 350 (660)
....+||+.|+.-+-.++...+.+. .+...-+| +.-+.-.| +-+-|-.|..+|++-|.-+ =+--+
T Consensus 551 t~s~~LiyIPSYfDFVRvRNy~K~e---------~i~F~~i~EYssk~~vsR--AR~lF~qgr~~vlLyTER~hffrR~~ 619 (698)
T KOG2340|consen 551 TESGILIYIPSYFDFVRVRNYMKKE---------EISFVMINEYSSKSKVSR--ARELFFQGRKSVLLYTERAHFFRRYH 619 (698)
T ss_pred ccCceEEEecchhhHHHHHHHhhhh---------hcchHHHhhhhhHhhhhH--HHHHHHhcCceEEEEehhhhhhhhhe
Confidence 3566999999999998888888776 22222222 22222222 2234667889999999653 35678
Q ss_pred CCCeEEEEeCCCccceeecCCCCcccceeeecCHHhHHHhhcccCCC-----CCcEEEEccChHHh
Q 006122 351 LEGIVYVVDSGFSKQRFYNPISDIENLVVAPISKASARQRAGRAGRV-----RPGKCYRLYTEEYF 411 (660)
Q Consensus 351 ip~v~~VId~g~~k~~~~~~~~~~~~l~~~~~s~~~~~QR~GRaGR~-----~~G~~~~l~~~~~~ 411 (660)
|.+|+-||. |-|++. |--.+++..+.+|+--. ..-.|-.||++-+.
T Consensus 620 ikGVk~vVf--------YqpP~~-------P~FYsEiinm~~k~~~~gn~d~d~~t~~ilytKyD~ 670 (698)
T KOG2340|consen 620 IKGVKNVVF--------YQPPNN-------PHFYSEIINMSDKTTSQGNTDLDIFTVRILYTKYDR 670 (698)
T ss_pred ecceeeEEE--------ecCCCC-------cHHHHHHHhhhhhhhccCCccccceEEEEEeechhh
Confidence 999999997 444444 45566777888887432 22378888887554
No 227
>PRK07994 DNA polymerase III subunits gamma and tau; Validated
Probab=96.75 E-value=0.0067 Score=68.12 Aligned_cols=49 Identities=22% Similarity=0.457 Sum_probs=32.0
Q ss_pred HHHHHhcCCCCCCCcEEEEeCCCcCCcChhHHHHHHHHHHHhcCCceEEEe
Q 006122 152 LLREMMDDPLLTKYSVIMVDEAHERSISTDILLGLLKKIQRCRSDLRLIIS 202 (660)
Q Consensus 152 ll~~l~~~~~l~~~~~iIiDE~Her~~~~d~ll~~l~~~~~~~~~~kii~~ 202 (660)
++..+...+...++.++||||+|. ++.+....++|.+..-.+..++|+.
T Consensus 107 li~~~~~~p~~g~~KV~IIDEah~--Ls~~a~NALLKtLEEPp~~v~FIL~ 155 (647)
T PRK07994 107 LLDNVQYAPARGRFKVYLIDEVHM--LSRHSFNALLKTLEEPPEHVKFLLA 155 (647)
T ss_pred HHHHHHhhhhcCCCEEEEEechHh--CCHHHHHHHHHHHHcCCCCeEEEEe
Confidence 334444444556889999999993 4556777788876655455555554
No 228
>PRK14960 DNA polymerase III subunits gamma and tau; Provisional
Probab=96.69 E-value=0.0075 Score=67.11 Aligned_cols=43 Identities=23% Similarity=0.498 Sum_probs=28.1
Q ss_pred CCCCCCCcEEEEeCCCcCCcChhHHHHHHHHHHHhcCCceEEEee
Q 006122 159 DPLLTKYSVIMVDEAHERSISTDILLGLLKKIQRCRSDLRLIISS 203 (660)
Q Consensus 159 ~~~l~~~~~iIiDE~Her~~~~d~ll~~l~~~~~~~~~~kii~~S 203 (660)
.+...++.++||||+| .++......+++.+....+...+|+.+
T Consensus 113 ~P~~gk~KV~IIDEVh--~LS~~A~NALLKtLEEPP~~v~FILaT 155 (702)
T PRK14960 113 APTQGRFKVYLIDEVH--MLSTHSFNALLKTLEEPPEHVKFLFAT 155 (702)
T ss_pred hhhcCCcEEEEEechH--hcCHHHHHHHHHHHhcCCCCcEEEEEE
Confidence 3445678999999999 344455666666665554556666544
No 229
>PRK06893 DNA replication initiation factor; Validated
Probab=96.69 E-value=0.011 Score=58.40 Aligned_cols=37 Identities=16% Similarity=0.086 Sum_probs=24.8
Q ss_pred cCCEEEEEcCCCCcHHHHHHHHHHhccccCCCeEEEEe
Q 006122 64 THATTIIVGETGSGKTTQIPQYLKEAGWADGGRVIACT 101 (660)
Q Consensus 64 ~~~~vii~apTGsGKT~~ip~~l~~~~~~~~~~~i~v~ 101 (660)
.+..+++.||+|+|||.++-.+..+... .+.+++++.
T Consensus 38 ~~~~l~l~G~~G~GKThL~~ai~~~~~~-~~~~~~y~~ 74 (229)
T PRK06893 38 QQPFFYIWGGKSSGKSHLLKAVSNHYLL-NQRTAIYIP 74 (229)
T ss_pred CCCeEEEECCCCCCHHHHHHHHHHHHHH-cCCCeEEee
Confidence 3566899999999999887766655422 233445543
No 230
>PRK15483 type III restriction-modification system StyLTI enzyme res; Provisional
Probab=96.68 E-value=0.014 Score=67.78 Aligned_cols=45 Identities=18% Similarity=0.180 Sum_probs=34.8
Q ss_pred CcEEEEeCCCcccccCCCCeEEEEeCCCccceeecCCCCcccceeeecCHHhHHHhhcccCCC
Q 006122 335 KRKVVISTNIAETSLTLEGIVYVVDSGFSKQRFYNPISDIENLVVAPISKASARQRAGRAGRV 397 (660)
Q Consensus 335 ~~~vlvaT~i~e~Gidip~v~~VId~g~~k~~~~~~~~~~~~l~~~~~s~~~~~QR~GRaGR~ 397 (660)
.++.|++-+.+..|-|-|++-.+.-.. ..-|...-.|.+||.-|.
T Consensus 501 ~~~fifs~~al~egwd~~~~~~~~~l~------------------~~~s~~~~~q~~gr~lr~ 545 (986)
T PRK15483 501 TRRFLFSKWTLREGWDNPNVFQIAKLR------------------SSGSETSKLQEVGRGLRL 545 (986)
T ss_pred CeEEEEEhHHhhhcCCCCCeEEEEEec------------------cCCchHHHHHHhccceec
Confidence 689999999999999999886554311 133556667999999997
No 231
>PRK08691 DNA polymerase III subunits gamma and tau; Validated
Probab=96.66 E-value=0.015 Score=65.35 Aligned_cols=44 Identities=25% Similarity=0.489 Sum_probs=30.2
Q ss_pred cCCCCCCCcEEEEeCCCcCCcChhHHHHHHHHHHHhcCCceEEEee
Q 006122 158 DDPLLTKYSVIMVDEAHERSISTDILLGLLKKIQRCRSDLRLIISS 203 (660)
Q Consensus 158 ~~~~l~~~~~iIiDE~Her~~~~d~ll~~l~~~~~~~~~~kii~~S 203 (660)
..+...++.+|||||+|. +..+....+++.+.......++|+.+
T Consensus 113 ~~P~~gk~KVIIIDEad~--Ls~~A~NALLKtLEEPp~~v~fILaT 156 (709)
T PRK08691 113 YAPTAGKYKVYIIDEVHM--LSKSAFNAMLKTLEEPPEHVKFILAT 156 (709)
T ss_pred hhhhhCCcEEEEEECccc--cCHHHHHHHHHHHHhCCCCcEEEEEe
Confidence 344567889999999994 44455666777766555666666655
No 232
>cd03115 SRP The signal recognition particle (SRP) mediates the transport to or across the plasma membrane in bacteria and the endoplasmic reticulum in eukaryotes. SRP recognizes N-terminal sighnal sequences of newly synthesized polypeptides at the ribosome. The SRP-polypeptide complex is then targeted to the membrane by an interaction between SRP and its cognated receptor (SR). In mammals, SRP consists of six protein subunits and a 7SL RNA. One of these subunits is a 54 kd protein (SRP54), which is a GTP-binding protein that interacts with the signal sequence when it emerges from the ribosome. SRP54 is a multidomain protein that consists of an N-terminal domain, followed by a central G (GTPase) domain and a C-terminal M domain.
Probab=96.65 E-value=0.017 Score=54.33 Aligned_cols=123 Identities=24% Similarity=0.312 Sum_probs=60.3
Q ss_pred EEEEEcCCCCcHHHHHHHHHHhccccCCCeE-EEEeCchHHHHHHHHHHHHHHhCCeeeeEEeeeeeccccCCCCCceEE
Q 006122 67 TTIIVGETGSGKTTQIPQYLKEAGWADGGRV-IACTQPRRLAVQAVASRVAEEMGVKVGEEVGYTIRFEDFTNKDLTAIK 145 (660)
Q Consensus 67 ~vii~apTGsGKT~~ip~~l~~~~~~~~~~~-i~v~p~r~la~~~~~~~~~~~~~~~~~~~vg~~~~~~~~~~~~~~~I~ 145 (660)
++++.|++|+|||+.+-.+...... .+.++ ++-..+++..........+...+..+.. . .. ..
T Consensus 2 ~~~~~G~~G~GKTt~~~~la~~~~~-~g~~v~~i~~D~~~~~~~~~l~~~~~~~~~~~~~--~--------~~--~~--- 65 (173)
T cd03115 2 VILLVGLQGVGKTTTAAKLALYLKK-KGKKVLLVAADTYRPAAIEQLRVLGEQVGVPVFE--E--------GE--GK--- 65 (173)
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHH-CCCcEEEEEcCCCChHHHHHHHHhcccCCeEEEe--c--------CC--CC---
Confidence 5789999999999887666554322 23344 3444555544433222223333322100 0 00 01
Q ss_pred EechHHHHHHHhcCCCCCCCcEEEEeCCCcCCcChhHHHHHHHHHHH-hcCCceEEEeecccch
Q 006122 146 FLTDGVLLREMMDDPLLTKYSVIMVDEAHERSISTDILLGLLKKIQR-CRSDLRLIISSATIEA 208 (660)
Q Consensus 146 v~T~~~ll~~l~~~~~l~~~~~iIiDE~Her~~~~d~ll~~l~~~~~-~~~~~kii~~SAT~~~ 208 (660)
.+..++........-.++++||+|.......+.+.+ ..+..+.. ..++--++.++|....
T Consensus 66 --~~~~~~~~~~~~~~~~~~d~viiDt~g~~~~~~~~l-~~l~~l~~~~~~~~~~lVv~~~~~~ 126 (173)
T cd03115 66 --DPVSIAKRAIEHAREENFDVVIVDTAGRLQIDENLM-EELKKIKRVVKPDEVLLVVDAMTGQ 126 (173)
T ss_pred --CHHHHHHHHHHHHHhCCCCEEEEECcccchhhHHHH-HHHHHHHhhcCCCeEEEEEECCCCh
Confidence 122222211111123468899999998433333333 33333333 3356667778886533
No 233
>PRK05642 DNA replication initiation factor; Validated
Probab=96.65 E-value=0.013 Score=58.12 Aligned_cols=35 Identities=11% Similarity=0.149 Sum_probs=23.0
Q ss_pred CEEEEEcCCCCcHHHHHHHHHHhccccCCCeEEEEe
Q 006122 66 ATTIIVGETGSGKTTQIPQYLKEAGWADGGRVIACT 101 (660)
Q Consensus 66 ~~vii~apTGsGKT~~ip~~l~~~~~~~~~~~i~v~ 101 (660)
..+++.||+|+|||.++-.+..+. ...+.+++++.
T Consensus 46 ~~l~l~G~~G~GKTHLl~a~~~~~-~~~~~~v~y~~ 80 (234)
T PRK05642 46 SLIYLWGKDGVGRSHLLQAACLRF-EQRGEPAVYLP 80 (234)
T ss_pred CeEEEECCCCCCHHHHHHHHHHHH-HhCCCcEEEee
Confidence 568999999999998866554332 22334455544
No 234
>COG1484 DnaC DNA replication protein [DNA replication, recombination, and repair]
Probab=96.62 E-value=0.033 Score=55.72 Aligned_cols=122 Identities=22% Similarity=0.315 Sum_probs=68.0
Q ss_pred HHHHHHHHhcCCEEEEEcCCCCcHHHHHHHHHHhccccCCCeEEEEeCchHHHHHHHHHHHHHHhCCeeeeEEeeeeecc
Q 006122 55 RTAILYLVETHATTIIVGETGSGKTTQIPQYLKEAGWADGGRVIACTQPRRLAVQAVASRVAEEMGVKVGEEVGYTIRFE 134 (660)
Q Consensus 55 ~~~i~~~l~~~~~vii~apTGsGKT~~ip~~l~~~~~~~~~~~i~v~p~r~la~~~~~~~~~~~~~~~~~~~vg~~~~~~ 134 (660)
...+.+.+.++.++++.||+|+|||+++..+..+.. ..+..+++++-| ++.. ++....+.
T Consensus 95 ~~~~~~~~~~~~nl~l~G~~G~GKThLa~Ai~~~l~-~~g~sv~f~~~~-el~~-----~Lk~~~~~------------- 154 (254)
T COG1484 95 LASLVEFFERGENLVLLGPPGVGKTHLAIAIGNELL-KAGISVLFITAP-DLLS-----KLKAAFDE------------- 154 (254)
T ss_pred HHHHHHHhccCCcEEEECCCCCcHHHHHHHHHHHHH-HcCCeEEEEEHH-HHHH-----HHHHHHhc-------------
Confidence 344455566888999999999999988877766665 445555555433 3332 22222210
Q ss_pred ccCCCCCceEEEechHHHHHHHhcCCCCCCCcEEEEeCCCcCCcC---hhHHHHHHHHHHHhcCCceEEEeecccchHHH
Q 006122 135 DFTNKDLTAIKFLTDGVLLREMMDDPLLTKYSVIMVDEAHERSIS---TDILLGLLKKIQRCRSDLRLIISSATIEAKSM 211 (660)
Q Consensus 135 ~~~~~~~~~I~v~T~~~ll~~l~~~~~l~~~~~iIiDE~Her~~~---~d~ll~~l~~~~~~~~~~kii~~SAT~~~~~~ 211 (660)
-...+.|.+. +.+++++||||+--.... .+.+..++......+ .. +++.-.+.+.+
T Consensus 155 -----------~~~~~~l~~~------l~~~dlLIiDDlG~~~~~~~~~~~~~q~I~~r~~~~---~~-~~tsN~~~~~~ 213 (254)
T COG1484 155 -----------GRLEEKLLRE------LKKVDLLIIDDIGYEPFSQEEADLLFQLISRRYESR---SL-IITSNLSFGEW 213 (254)
T ss_pred -----------CchHHHHHHH------hhcCCEEEEecccCccCCHHHHHHHHHHHHHHHhhc---cc-eeecCCChHHH
Confidence 0112344443 557899999998732222 233444443333222 23 45555566666
Q ss_pred HHHhhc
Q 006122 212 SAFFHA 217 (660)
Q Consensus 212 ~~~~~~ 217 (660)
.+.|+.
T Consensus 214 ~~~~~~ 219 (254)
T COG1484 214 DELFGD 219 (254)
T ss_pred HhhccC
Confidence 665553
No 235
>PRK09183 transposase/IS protein; Provisional
Probab=96.58 E-value=0.024 Score=56.99 Aligned_cols=39 Identities=28% Similarity=0.310 Sum_probs=27.5
Q ss_pred HhcCCEEEEEcCCCCcHHHHHHHHHHhccccCCCeEEEEe
Q 006122 62 VETHATTIIVGETGSGKTTQIPQYLKEAGWADGGRVIACT 101 (660)
Q Consensus 62 l~~~~~vii~apTGsGKT~~ip~~l~~~~~~~~~~~i~v~ 101 (660)
+..+.++++.||+|+|||+++..+..... ..+..+.++.
T Consensus 99 i~~~~~v~l~Gp~GtGKThLa~al~~~a~-~~G~~v~~~~ 137 (259)
T PRK09183 99 IERNENIVLLGPSGVGKTHLAIALGYEAV-RAGIKVRFTT 137 (259)
T ss_pred hhcCCeEEEEeCCCCCHHHHHHHHHHHHH-HcCCeEEEEe
Confidence 56788999999999999988876654432 2344444443
No 236
>PRK09112 DNA polymerase III subunit delta'; Validated
Probab=96.57 E-value=0.026 Score=59.25 Aligned_cols=140 Identities=14% Similarity=0.096 Sum_probs=67.4
Q ss_pred HHHHHHHhcCC---EEEEEcCCCCcHHHHHHHHHHhccccCC---CeEEEEeCchHHHHHHHHHHHHHHhCCeeeeEEee
Q 006122 56 TAILYLVETHA---TTIIVGETGSGKTTQIPQYLKEAGWADG---GRVIACTQPRRLAVQAVASRVAEEMGVKVGEEVGY 129 (660)
Q Consensus 56 ~~i~~~l~~~~---~vii~apTGsGKT~~ip~~l~~~~~~~~---~~~i~v~p~r~la~~~~~~~~~~~~~~~~~~~vg~ 129 (660)
..+..++.+++ .++++||.|+|||+++-.+......... ...-...+.- ....++.+.....-.+-. +.
T Consensus 33 ~~L~~a~~~grl~ha~L~~G~~G~GKttlA~~lA~~Llc~~~~~~~~~~~~~~~~---~c~~c~~i~~~~hPdl~~-l~- 107 (351)
T PRK09112 33 AFLAQAYREGKLHHALLFEGPEGIGKATLAFHLANHILSHPDPAEAPETLADPDP---ASPVWRQIAQGAHPNLLH-IT- 107 (351)
T ss_pred HHHHHHHHcCCCCeeEeeECCCCCCHHHHHHHHHHHHcCCCccccCccccCCCCC---CCHHHHHHHcCCCCCEEE-ee-
Confidence 45566667665 5999999999999887666554322110 0000000110 001122222111111100 00
Q ss_pred eeeccccCCCCCceEEEechHHHHHHHhcCCCCCCCcEEEEeCCCcCCcChhHHHHHHHHHHHhcCCceEEEee
Q 006122 130 TIRFEDFTNKDLTAIKFLTDGVLLREMMDDPLLTKYSVIMVDEAHERSISTDILLGLLKKIQRCRSDLRLIISS 203 (660)
Q Consensus 130 ~~~~~~~~~~~~~~I~v~T~~~ll~~l~~~~~l~~~~~iIiDE~Her~~~~d~ll~~l~~~~~~~~~~kii~~S 203 (660)
...+.........|.+---..+.+.+...+....+.+|||||+|. ++......+++.+..-.++..+|++|
T Consensus 108 -~~~~~~~~~~~~~I~vd~iR~l~~~l~~~~~~g~~rVviIDeAd~--l~~~aanaLLk~LEEpp~~~~fiLit 178 (351)
T PRK09112 108 -RPFDEKTGKFKTAITVDEIRRVGHFLSQTSGDGNWRIVIIDPADD--MNRNAANAILKTLEEPPARALFILIS 178 (351)
T ss_pred -cccccccccccccCCHHHHHHHHHHhhhccccCCceEEEEEchhh--cCHHHHHHHHHHHhcCCCCceEEEEE
Confidence 000011000012233322223444444445567889999999994 45566677777776654555566665
No 237
>cd01120 RecA-like_NTPases RecA-like NTPases. This family includes the NTP binding domain of F1 and V1 H+ATPases, DnaB and related helicases as well as bacterial RecA and related eukaryotic and archaeal recombinases. This group also includes bacterial conjugation proteins and related DNA transfer proteins involved in type II and type IV secretion.
Probab=96.56 E-value=0.013 Score=53.91 Aligned_cols=39 Identities=31% Similarity=0.429 Sum_probs=28.6
Q ss_pred EEEEEcCCCCcHHHHHHHHHHhccccCCCeEEEEeCchHH
Q 006122 67 TTIIVGETGSGKTTQIPQYLKEAGWADGGRVIACTQPRRL 106 (660)
Q Consensus 67 ~vii~apTGsGKT~~ip~~l~~~~~~~~~~~i~v~p~r~l 106 (660)
+++|.|++|+|||+++-.++..... .+..++++......
T Consensus 1 ~~~i~G~~G~GKT~l~~~i~~~~~~-~~~~v~~~~~e~~~ 39 (165)
T cd01120 1 LILVFGPTGSGKTTLALQLALNIAT-KGGKVVYVDIEEEI 39 (165)
T ss_pred CeeEeCCCCCCHHHHHHHHHHHHHh-cCCEEEEEECCcch
Confidence 3689999999999888877766543 45667777665443
No 238
>PRK12323 DNA polymerase III subunits gamma and tau; Provisional
Probab=96.55 E-value=0.0087 Score=66.46 Aligned_cols=50 Identities=22% Similarity=0.484 Sum_probs=32.6
Q ss_pred HHHHHhcCCCCCCCcEEEEeCCCcCCcChhHHHHHHHHHHHhcCCceEEEee
Q 006122 152 LLREMMDDPLLTKYSVIMVDEAHERSISTDILLGLLKKIQRCRSDLRLIISS 203 (660)
Q Consensus 152 ll~~l~~~~~l~~~~~iIiDE~Her~~~~d~ll~~l~~~~~~~~~~kii~~S 203 (660)
++..+...+...++.++||||+|. ++......++|.+..-.++.++|+.|
T Consensus 112 Lie~~~~~P~~gr~KViIIDEah~--Ls~~AaNALLKTLEEPP~~v~FILaT 161 (700)
T PRK12323 112 LLDKAVYAPTAGRFKVYMIDEVHM--LTNHAFNAMLKTLEEPPEHVKFILAT 161 (700)
T ss_pred HHHHHHhchhcCCceEEEEEChHh--cCHHHHHHHHHhhccCCCCceEEEEe
Confidence 333333344567899999999993 45566777777765555556666654
No 239
>TIGR03420 DnaA_homol_Hda DnaA regulatory inactivator Hda. Members of this protein family are Hda (Homologous to DnaA). These proteins are about half the length of DnaA and homologous over length of Hda. In the model species Escherichia coli, the initiation of DNA replication requires DnaA bound to ATP rather than ADP; Hda helps facilitate the conversion of DnaA-ATP to DnaA-ADP.
Probab=96.54 E-value=0.015 Score=57.26 Aligned_cols=27 Identities=26% Similarity=0.329 Sum_probs=21.5
Q ss_pred hcCCEEEEEcCCCCcHHHHHHHHHHhc
Q 006122 63 ETHATTIIVGETGSGKTTQIPQYLKEA 89 (660)
Q Consensus 63 ~~~~~vii~apTGsGKT~~ip~~l~~~ 89 (660)
..+..+++.||+|+|||+++-.+....
T Consensus 36 ~~~~~lll~G~~G~GKT~la~~~~~~~ 62 (226)
T TIGR03420 36 KGDRFLYLWGESGSGKSHLLQAACAAA 62 (226)
T ss_pred CCCCeEEEECCCCCCHHHHHHHHHHHH
Confidence 346789999999999998887666544
No 240
>PRK14949 DNA polymerase III subunits gamma and tau; Provisional
Probab=96.53 E-value=0.015 Score=66.84 Aligned_cols=46 Identities=20% Similarity=0.425 Sum_probs=31.1
Q ss_pred HHhcCCCCCCCcEEEEeCCCcCCcChhHHHHHHHHHHHhcCCceEEEe
Q 006122 155 EMMDDPLLTKYSVIMVDEAHERSISTDILLGLLKKIQRCRSDLRLIIS 202 (660)
Q Consensus 155 ~l~~~~~l~~~~~iIiDE~Her~~~~d~ll~~l~~~~~~~~~~kii~~ 202 (660)
.+...+.-.++.++||||+|. +..+....++|.+..-....++|+.
T Consensus 110 ~v~~~P~~gk~KViIIDEAh~--LT~eAqNALLKtLEEPP~~vrFILa 155 (944)
T PRK14949 110 NVQYRPSRGRFKVYLIDEVHM--LSRSSFNALLKTLEEPPEHVKFLLA 155 (944)
T ss_pred HHHhhhhcCCcEEEEEechHh--cCHHHHHHHHHHHhccCCCeEEEEE
Confidence 333334456789999999993 4566777777777665556666664
No 241
>PF01695 IstB_IS21: IstB-like ATP binding protein; InterPro: IPR002611 Proteins in this entry contain an ATP/GTP binding P-loop motif. They are found associated with IS21 family insertion sequences []. Functionally they have not been characterised, but they may be involved in transposition [].; GO: 0005524 ATP binding; PDB: 3EC2_A 3ECC_A 2W58_A 2QGZ_A.
Probab=96.53 E-value=0.0054 Score=57.86 Aligned_cols=120 Identities=21% Similarity=0.272 Sum_probs=55.3
Q ss_pred HHHHhcCCEEEEEcCCCCcHHHHHHHHHHhccccCCCeEEEEeCchHHHHHHHHHHHHHHhCCeeeeEEeeeeeccccCC
Q 006122 59 LYLVETHATTIIVGETGSGKTTQIPQYLKEAGWADGGRVIACTQPRRLAVQAVASRVAEEMGVKVGEEVGYTIRFEDFTN 138 (660)
Q Consensus 59 ~~~l~~~~~vii~apTGsGKT~~ip~~l~~~~~~~~~~~i~v~p~r~la~~~~~~~~~~~~~~~~~~~vg~~~~~~~~~~ 138 (660)
.+.+.+++++++.||+|+|||+++-.+..+... .+..++++. ...+... +.... ..
T Consensus 41 ~~~~~~~~~l~l~G~~G~GKThLa~ai~~~~~~-~g~~v~f~~-~~~L~~~-----l~~~~-----------------~~ 96 (178)
T PF01695_consen 41 LEFIENGENLILYGPPGTGKTHLAVAIANEAIR-KGYSVLFIT-ASDLLDE-----LKQSR-----------------SD 96 (178)
T ss_dssp H-S-SC--EEEEEESTTSSHHHHHHHHHHHHHH-TT--EEEEE-HHHHHHH-----HHCCH-----------------CC
T ss_pred CCCcccCeEEEEEhhHhHHHHHHHHHHHHHhcc-CCcceeEee-cCceecc-----ccccc-----------------cc
Confidence 344567889999999999999877666555432 444455544 3333322 11100 00
Q ss_pred CCCceEEEechHHHHHHHhcCCCCCCCcEEEEeCCCcCCcChhHHHHHHHHHH-HhcCCceEEEeecccchHHHHHHhhc
Q 006122 139 KDLTAIKFLTDGVLLREMMDDPLLTKYSVIMVDEAHERSISTDILLGLLKKIQ-RCRSDLRLIISSATIEAKSMSAFFHA 217 (660)
Q Consensus 139 ~~~~~I~v~T~~~ll~~l~~~~~l~~~~~iIiDE~Her~~~~d~ll~~l~~~~-~~~~~~kii~~SAT~~~~~~~~~~~~ 217 (660)
. +.+.+++. +.+++++||||.--.... +.....+-.+. .+..+..+|+ +.-.+.+.+.+.+++
T Consensus 97 ~--------~~~~~~~~------l~~~dlLilDDlG~~~~~-~~~~~~l~~ii~~R~~~~~tIi-TSN~~~~~l~~~~~d 160 (178)
T PF01695_consen 97 G--------SYEELLKR------LKRVDLLILDDLGYEPLS-EWEAELLFEIIDERYERKPTII-TSNLSPSELEEVLGD 160 (178)
T ss_dssp T--------THCHHHHH------HHTSSCEEEETCTSS----HHHHHCTHHHHHHHHHT-EEEE-EESS-HHHHHT----
T ss_pred c--------chhhhcCc------cccccEecccccceeeec-ccccccchhhhhHhhcccCeEe-eCCCchhhHhhcccc
Confidence 1 11223333 346799999998732222 22222222222 2222234454 444677778887775
Q ss_pred C
Q 006122 218 R 218 (660)
Q Consensus 218 ~ 218 (660)
.
T Consensus 161 ~ 161 (178)
T PF01695_consen 161 R 161 (178)
T ss_dssp -
T ss_pred c
Confidence 4
No 242
>PRK08903 DnaA regulatory inactivator Hda; Validated
Probab=96.52 E-value=0.015 Score=57.39 Aligned_cols=37 Identities=19% Similarity=0.282 Sum_probs=25.1
Q ss_pred cCCEEEEEcCCCCcHHHHHHHHHHhccccCCCeEEEEe
Q 006122 64 THATTIIVGETGSGKTTQIPQYLKEAGWADGGRVIACT 101 (660)
Q Consensus 64 ~~~~vii~apTGsGKT~~ip~~l~~~~~~~~~~~i~v~ 101 (660)
.++.+++.||+|+|||+++-.+..... ..+..++++.
T Consensus 41 ~~~~~~l~G~~G~GKT~La~ai~~~~~-~~~~~~~~i~ 77 (227)
T PRK08903 41 ADRFFYLWGEAGSGRSHLLQALVADAS-YGGRNARYLD 77 (227)
T ss_pred CCCeEEEECCCCCCHHHHHHHHHHHHH-hCCCcEEEEe
Confidence 456899999999999988776655432 2333444443
No 243
>PF02562 PhoH: PhoH-like protein; InterPro: IPR003714 PhoH is a cytoplasmic protein and predicted ATPase that is induced by phosphate starvation and belongings to the phosphate regulon (pho) in Escherichia coli [].; GO: 0005524 ATP binding; PDB: 3B85_A.
Probab=96.52 E-value=0.0031 Score=60.38 Aligned_cols=55 Identities=20% Similarity=0.172 Sum_probs=35.5
Q ss_pred CCcHHHHHHHHHHHhcCCEEEEEcCCCCcHHHHHHHHHHhcccc-CCCeEEEEeCc
Q 006122 49 LPVYKYRTAILYLVETHATTIIVGETGSGKTTQIPQYLKEAGWA-DGGRVIACTQP 103 (660)
Q Consensus 49 lPi~~~~~~i~~~l~~~~~vii~apTGsGKT~~ip~~l~~~~~~-~~~~~i~v~p~ 103 (660)
-|....|...++++...+.+++.||.|||||++.-...++.... .-.++|++-|+
T Consensus 3 ~p~~~~Q~~~~~al~~~~~v~~~G~AGTGKT~LA~a~Al~~v~~g~~~kiii~Rp~ 58 (205)
T PF02562_consen 3 KPKNEEQKFALDALLNNDLVIVNGPAGTGKTFLALAAALELVKEGEYDKIIITRPP 58 (205)
T ss_dssp ---SHHHHHHHHHHHH-SEEEEE--TTSSTTHHHHHHHHHHHHTTS-SEEEEEE-S
T ss_pred cCCCHHHHHHHHHHHhCCeEEEECCCCCcHHHHHHHHHHHHHHhCCCcEEEEEecC
Confidence 47788999999999999999999999999997766555544322 22455555555
No 244
>TIGR00959 ffh signal recognition particle protein. This model represents Ffh (Fifty-Four Homolog), the protein component that forms the bacterial (and organellar) signal recognition particle together with a 4.5S RNA. Ffh is a GTPase homologous to eukaryotic SRP54 and also to the GTPase FtsY (TIGR00064) that is the receptor for the signal recognition particle.
Probab=96.48 E-value=0.027 Score=60.48 Aligned_cols=123 Identities=21% Similarity=0.242 Sum_probs=68.4
Q ss_pred CEEEEEcCCCCcHHHHHHHHHHhccccCCCe-EEEEeCchHHHHHHHHHHHHHHhCCeeeeEEeeeeeccccCCCCCceE
Q 006122 66 ATTIIVGETGSGKTTQIPQYLKEAGWADGGR-VIACTQPRRLAVQAVASRVAEEMGVKVGEEVGYTIRFEDFTNKDLTAI 144 (660)
Q Consensus 66 ~~vii~apTGsGKT~~ip~~l~~~~~~~~~~-~i~v~p~r~la~~~~~~~~~~~~~~~~~~~vg~~~~~~~~~~~~~~~I 144 (660)
.+++++|++|+||||.+..+........+.+ .++-+-++|.++....+..++..+..+.. ....
T Consensus 100 ~vi~~vG~~GsGKTTtaakLA~~l~~~~g~kV~lV~~D~~R~~a~~QL~~~a~~~gvp~~~----------~~~~----- 164 (428)
T TIGR00959 100 TVILMVGLQGSGKTTTCGKLAYYLKKKQGKKVLLVACDLYRPAAIEQLKVLGQQVGVPVFA----------LGKG----- 164 (428)
T ss_pred EEEEEECCCCCcHHHHHHHHHHHHHHhCCCeEEEEeccccchHHHHHHHHHHHhcCCceEe----------cCCC-----
Confidence 3688999999999988777665532122333 45666677776665555555555543211 0000
Q ss_pred EEechHHHHHHHhcCCCCCCCcEEEEeCCCcCCcChhHHHHHHHHHHH-hcCCceEEEeeccc
Q 006122 145 KFLTDGVLLREMMDDPLLTKYSVIMVDEAHERSISTDILLGLLKKIQR-CRSDLRLIISSATI 206 (660)
Q Consensus 145 ~v~T~~~ll~~l~~~~~l~~~~~iIiDE~Her~~~~d~ll~~l~~~~~-~~~~~kii~~SAT~ 206 (660)
..|..+............+++||||=+- |....+.+...+..+.. ..++--++.++||.
T Consensus 165 --~~P~~i~~~al~~~~~~~~DvVIIDTaG-r~~~d~~l~~eL~~i~~~~~p~e~lLVvda~t 224 (428)
T TIGR00959 165 --QSPVEIARRALEYAKENGFDVVIVDTAG-RLQIDEELMEELAAIKEILNPDEILLVVDAMT 224 (428)
T ss_pred --CCHHHHHHHHHHHHHhcCCCEEEEeCCC-ccccCHHHHHHHHHHHHhhCCceEEEEEeccc
Confidence 1122222211111113568999999998 55433344444444433 34555677888886
No 245
>PRK14958 DNA polymerase III subunits gamma and tau; Provisional
Probab=96.47 E-value=0.018 Score=63.60 Aligned_cols=44 Identities=25% Similarity=0.468 Sum_probs=29.8
Q ss_pred cCCCCCCCcEEEEeCCCcCCcChhHHHHHHHHHHHhcCCceEEEee
Q 006122 158 DDPLLTKYSVIMVDEAHERSISTDILLGLLKKIQRCRSDLRLIISS 203 (660)
Q Consensus 158 ~~~~l~~~~~iIiDE~Her~~~~d~ll~~l~~~~~~~~~~kii~~S 203 (660)
..+.-.++.++||||+|. +..+....+++.+....+..++|+.+
T Consensus 113 ~~p~~~~~kV~iIDE~~~--ls~~a~naLLk~LEepp~~~~fIlat 156 (509)
T PRK14958 113 YAPTKGRFKVYLIDEVHM--LSGHSFNALLKTLEEPPSHVKFILAT 156 (509)
T ss_pred hccccCCcEEEEEEChHh--cCHHHHHHHHHHHhccCCCeEEEEEE
Confidence 345556889999999993 44556677777666555566666543
No 246
>PRK00411 cdc6 cell division control protein 6; Reviewed
Probab=96.45 E-value=0.017 Score=62.12 Aligned_cols=24 Identities=33% Similarity=0.592 Sum_probs=19.9
Q ss_pred CEEEEEcCCCCcHHHHHHHHHHhc
Q 006122 66 ATTIIVGETGSGKTTQIPQYLKEA 89 (660)
Q Consensus 66 ~~vii~apTGsGKT~~ip~~l~~~ 89 (660)
.+++|.||+|+|||+++-.++.+.
T Consensus 56 ~~~lI~G~~GtGKT~l~~~v~~~l 79 (394)
T PRK00411 56 LNVLIYGPPGTGKTTTVKKVFEEL 79 (394)
T ss_pred CeEEEECCCCCCHHHHHHHHHHHH
Confidence 679999999999998887666544
No 247
>PRK12402 replication factor C small subunit 2; Reviewed
Probab=96.45 E-value=0.024 Score=59.48 Aligned_cols=35 Identities=23% Similarity=0.359 Sum_probs=25.6
Q ss_pred HHHHHHHHhcCC--EEEEEcCCCCcHHHHHHHHHHhc
Q 006122 55 RTAILYLVETHA--TTIIVGETGSGKTTQIPQYLKEA 89 (660)
Q Consensus 55 ~~~i~~~l~~~~--~vii~apTGsGKT~~ip~~l~~~ 89 (660)
.+.+..++..++ ++++.||+|+|||+++-.+..+.
T Consensus 24 ~~~L~~~~~~~~~~~lll~Gp~GtGKT~la~~~~~~l 60 (337)
T PRK12402 24 VERLSRAVDSPNLPHLLVQGPPGSGKTAAVRALAREL 60 (337)
T ss_pred HHHHHHHHhCCCCceEEEECCCCCCHHHHHHHHHHHh
Confidence 344445555555 79999999999998887666554
No 248
>PRK00149 dnaA chromosomal replication initiation protein; Reviewed
Probab=96.45 E-value=0.022 Score=62.38 Aligned_cols=24 Identities=25% Similarity=0.235 Sum_probs=18.8
Q ss_pred CEEEEEcCCCCcHHHHHHHHHHhc
Q 006122 66 ATTIIVGETGSGKTTQIPQYLKEA 89 (660)
Q Consensus 66 ~~vii~apTGsGKT~~ip~~l~~~ 89 (660)
+.+++.||+|+|||+++-.+..+.
T Consensus 149 ~~l~l~G~~G~GKThL~~ai~~~~ 172 (450)
T PRK00149 149 NPLFIYGGVGLGKTHLLHAIGNYI 172 (450)
T ss_pred CeEEEECCCCCCHHHHHHHHHHHH
Confidence 468999999999997776555443
No 249
>KOG2373 consensus Predicted mitochondrial DNA helicase twinkle [Replication, recombination and repair]
Probab=96.39 E-value=0.00075 Score=67.55 Aligned_cols=109 Identities=20% Similarity=0.248 Sum_probs=58.9
Q ss_pred HHHHhcCCEEEEEcCCCCcHHHHHHHHHHhccccCCCeEEEE---eCchHHHHHHHHHHHHHHhCCeeeeEEeeeeeccc
Q 006122 59 LYLVETHATTIIVGETGSGKTTQIPQYLKEAGWADGGRVIAC---TQPRRLAVQAVASRVAEEMGVKVGEEVGYTIRFED 135 (660)
Q Consensus 59 ~~~l~~~~~vii~apTGsGKT~~ip~~l~~~~~~~~~~~i~v---~p~r~la~~~~~~~~~~~~~~~~~~~vg~~~~~~~ 135 (660)
+.-.+.+...|++|||||||||.+.-+.++... ++-..+++ .|..+++..-+.++............--+..+|+.
T Consensus 267 LkGhR~GElTvlTGpTGsGKTTFlsEYsLDL~~-QGVnTLwgSFEi~n~rla~~mL~Qyagyrl~drl~~y~HWadrFEr 345 (514)
T KOG2373|consen 267 LKGHRPGELTVLTGPTGSGKTTFLSEYSLDLFT-QGVNTLWGSFEIPNKRLAHWMLVQYAGYRLLDRLNSYKHWADRFER 345 (514)
T ss_pred hccCCCCceEEEecCCCCCceeEehHhhHHHHh-hhhhheeeeeecchHHHHHHHHHHHccCchHhhhhhhhHHHHHHhc
Confidence 333356788999999999999888888777643 33333444 46677776644443221111111111112333333
Q ss_pred cCCCCCceEEEech------HHHHHHHhcCCCCCCCcEEEEeCCC
Q 006122 136 FTNKDLTAIKFLTD------GVLLREMMDDPLLTKYSVIMVDEAH 174 (660)
Q Consensus 136 ~~~~~~~~I~v~T~------~~ll~~l~~~~~l~~~~~iIiDE~H 174 (660)
. ..-++|- +..++.+.......++.+||||..+
T Consensus 346 l------plyfmtfhgqq~~~~vi~~i~ha~yV~di~HViIDNLQ 384 (514)
T KOG2373|consen 346 L------PLYFMTFHGQQFMEKVINEIAHAIYVEDIQHVIIDNLQ 384 (514)
T ss_pred c------chHhhhhcccchHHHHHHHHHHHHHHHhhhhhhhhhHH
Confidence 2 1223332 2233334333346678899999877
No 250
>PRK14964 DNA polymerase III subunits gamma and tau; Provisional
Probab=96.38 E-value=0.027 Score=61.40 Aligned_cols=49 Identities=24% Similarity=0.470 Sum_probs=32.1
Q ss_pred HHHHhcCCCCCCCcEEEEeCCCcCCcChhHHHHHHHHHHHhcCCceEEEee
Q 006122 153 LREMMDDPLLTKYSVIMVDEAHERSISTDILLGLLKKIQRCRSDLRLIISS 203 (660)
Q Consensus 153 l~~l~~~~~l~~~~~iIiDE~Her~~~~d~ll~~l~~~~~~~~~~kii~~S 203 (660)
+......|...++.++||||+|. +..+....+++.+..-.+...+|+.+
T Consensus 105 ie~~~~~P~~~~~KVvIIDEah~--Ls~~A~NaLLK~LEePp~~v~fIlat 153 (491)
T PRK14964 105 LENSCYLPISSKFKVYIIDEVHM--LSNSAFNALLKTLEEPAPHVKFILAT 153 (491)
T ss_pred HHHHHhccccCCceEEEEeChHh--CCHHHHHHHHHHHhCCCCCeEEEEEe
Confidence 33444556678899999999993 44455666777766555555555543
No 251
>PRK08084 DNA replication initiation factor; Provisional
Probab=96.37 E-value=0.01 Score=58.83 Aligned_cols=37 Identities=14% Similarity=0.144 Sum_probs=24.6
Q ss_pred cCCEEEEEcCCCCcHHHHHHHHHHhccccCCCeEEEEe
Q 006122 64 THATTIIVGETGSGKTTQIPQYLKEAGWADGGRVIACT 101 (660)
Q Consensus 64 ~~~~vii~apTGsGKT~~ip~~l~~~~~~~~~~~i~v~ 101 (660)
....+++.||+|+|||+++-.+..... ..+.+++++.
T Consensus 44 ~~~~l~l~Gp~G~GKThLl~a~~~~~~-~~~~~v~y~~ 80 (235)
T PRK08084 44 HSGYIYLWSREGAGRSHLLHAACAELS-QRGRAVGYVP 80 (235)
T ss_pred CCCeEEEECCCCCCHHHHHHHHHHHHH-hCCCeEEEEE
Confidence 346899999999999988766555432 2334444443
No 252
>cd03228 ABCC_MRP_Like The MRP (Mutidrug Resistance Protein)-like transporters are involved in drug, peptide, and lipid export. They belong to the subfamily C of the ATP-binding cassette (ABC) superfamily of transport proteins. The ABCC subfamily contains transporters with a diverse functional spectrum that includes ion transport, cell surface receptor, and toxin secretion activities. The MRP-like family, simlar to all ABC proteins, have a common four-domain core structure constituted by two membrane-spanning domains, each composed of six transmembrane (TM) helices, and two nucleotide-binding domains (NBD). ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=96.35 E-value=0.026 Score=52.92 Aligned_cols=133 Identities=18% Similarity=0.239 Sum_probs=65.6
Q ss_pred HhcCCEEEEEcCCCCcHHHHHHHHHHhccccCCCeEEEEeCchHHHHHHHHHHHHHHhCCeeeeEEeeeeeccccCCCC-
Q 006122 62 VETHATTIIVGETGSGKTTQIPQYLKEAGWADGGRVIACTQPRRLAVQAVASRVAEEMGVKVGEEVGYTIRFEDFTNKD- 140 (660)
Q Consensus 62 l~~~~~vii~apTGsGKT~~ip~~l~~~~~~~~~~~i~v~p~r~la~~~~~~~~~~~~~~~~~~~vg~~~~~~~~~~~~- 140 (660)
+..++.+.|.||.||||||++-.+.-.... ..+. |.+- -..+.... ...... .+||...........
T Consensus 25 i~~G~~~~l~G~nGsGKstLl~~i~G~~~~-~~G~-i~~~-g~~~~~~~-~~~~~~--------~i~~~~~~~~~~~~t~ 92 (171)
T cd03228 25 IKPGEKVAIVGPSGSGKSTLLKLLLRLYDP-TSGE-ILID-GVDLRDLD-LESLRK--------NIAYVPQDPFLFSGTI 92 (171)
T ss_pred EcCCCEEEEECCCCCCHHHHHHHHHcCCCC-CCCE-EEEC-CEEhhhcC-HHHHHh--------hEEEEcCCchhccchH
Confidence 357899999999999999988766554322 2333 3221 11111100 001111 122221110000000
Q ss_pred CceEEEechHHHHHHHhcCCCCCCCcEEEEeCCCcCCcChhHHHHHHHHHHHhcCCceEEEeecccchHHH
Q 006122 141 LTAIKFLTDGVLLREMMDDPLLTKYSVIMVDEAHERSISTDILLGLLKKIQRCRSDLRLIISSATIEAKSM 211 (660)
Q Consensus 141 ~~~I~v~T~~~ll~~l~~~~~l~~~~~iIiDE~Her~~~~d~ll~~l~~~~~~~~~~kii~~SAT~~~~~~ 211 (660)
.-.+ .+.|.-.+......+..+.+++++||-= .+++......+.+.+...... +.|+++ |-+.+.+
T Consensus 93 ~e~l--LS~G~~~rl~la~al~~~p~llllDEP~-~gLD~~~~~~l~~~l~~~~~~-~tii~~-sh~~~~~ 158 (171)
T cd03228 93 RENI--LSGGQRQRIAIARALLRDPPILILDEAT-SALDPETEALILEALRALAKG-KTVIVI-AHRLSTI 158 (171)
T ss_pred HHHh--hCHHHHHHHHHHHHHhcCCCEEEEECCC-cCCCHHHHHHHHHHHHHhcCC-CEEEEE-ecCHHHH
Confidence 0011 4445544443333345677999999977 577776666666655554444 344444 4344433
No 253
>KOG1802 consensus RNA helicase nonsense mRNA reducing factor (pNORF1) [RNA processing and modification]
Probab=96.33 E-value=0.0064 Score=65.93 Aligned_cols=72 Identities=24% Similarity=0.420 Sum_probs=53.3
Q ss_pred cHHHHHHHHHHHhcCCEEEEEcCCCCcHHHHHHHHHHhccccCCCeEEEEeCchHHHHHHHHHHHHHHhCCeee
Q 006122 51 VYKYRTAILYLVETHATTIIVGETGSGKTTQIPQYLKEAGWADGGRVIACTQPRRLAVQAVASRVAEEMGVKVG 124 (660)
Q Consensus 51 i~~~~~~i~~~l~~~~~vii~apTGsGKT~~ip~~l~~~~~~~~~~~i~v~p~r~la~~~~~~~~~~~~~~~~~ 124 (660)
+...|..+++++.++...+|+||+|+|||.....+++.......+++++|+ |..+|..++|+.+-+ .|+++.
T Consensus 411 LN~SQ~~AV~~VL~rplsLIQGPPGTGKTvtsa~IVyhl~~~~~~~VLvcA-pSNiAVDqLaeKIh~-tgLKVv 482 (935)
T KOG1802|consen 411 LNASQSNAVKHVLQRPLSLIQGPPGTGKTVTSATIVYHLARQHAGPVLVCA-PSNIAVDQLAEKIHK-TGLKVV 482 (935)
T ss_pred hchHHHHHHHHHHcCCceeeecCCCCCceehhHHHHHHHHHhcCCceEEEc-ccchhHHHHHHHHHh-cCceEe
Confidence 778899999999999999999999999995555455444333556666666 456888888887764 345543
No 254
>KOG0989 consensus Replication factor C, subunit RFC4 [Replication, recombination and repair]
Probab=96.33 E-value=0.012 Score=58.62 Aligned_cols=42 Identities=19% Similarity=0.388 Sum_probs=31.5
Q ss_pred CCCCcEEEEeCCCcCCcChhHHHHHHHHHHHhcCCceEEEeecc
Q 006122 162 LTKYSVIMVDEAHERSISTDILLGLLKKIQRCRSDLRLIISSAT 205 (660)
Q Consensus 162 l~~~~~iIiDE~Her~~~~d~ll~~l~~~~~~~~~~kii~~SAT 205 (660)
...+.+||+|||| ++..|...++.+.+-......++|+..--
T Consensus 127 ~~~fKiiIlDEcd--smtsdaq~aLrr~mE~~s~~trFiLIcny 168 (346)
T KOG0989|consen 127 CPPFKIIILDECD--SMTSDAQAALRRTMEDFSRTTRFILICNY 168 (346)
T ss_pred CCcceEEEEechh--hhhHHHHHHHHHHHhccccceEEEEEcCC
Confidence 5678999999999 56667777777777665666777776544
No 255
>PRK14957 DNA polymerase III subunits gamma and tau; Provisional
Probab=96.33 E-value=0.017 Score=63.82 Aligned_cols=51 Identities=24% Similarity=0.425 Sum_probs=32.4
Q ss_pred HHHHHHhcCCCCCCCcEEEEeCCCcCCcChhHHHHHHHHHHHhcCCceEEEee
Q 006122 151 VLLREMMDDPLLTKYSVIMVDEAHERSISTDILLGLLKKIQRCRSDLRLIISS 203 (660)
Q Consensus 151 ~ll~~l~~~~~l~~~~~iIiDE~Her~~~~d~ll~~l~~~~~~~~~~kii~~S 203 (660)
.++..+...+...++.++||||+|. ++.+....+++.+....+...+|+.+
T Consensus 106 ~ii~~~~~~p~~g~~kViIIDEa~~--ls~~a~naLLK~LEepp~~v~fIL~T 156 (546)
T PRK14957 106 EILDNIQYMPSQGRYKVYLIDEVHM--LSKQSFNALLKTLEEPPEYVKFILAT 156 (546)
T ss_pred HHHHHHHhhhhcCCcEEEEEechhh--ccHHHHHHHHHHHhcCCCCceEEEEE
Confidence 3444444455667889999999994 34455666666665544455555544
No 256
>cd03247 ABCC_cytochrome_bd The CYD subfamily implicated in cytochrome bd biogenesis. The CydC and CydD proteins are important for the formation of cytochrome bd terminal oxidase of E. coli and it has been proposed that they were necessary for biosynthesis of the cytochrome bd quinol oxidase and for periplasmic c-type cytochromes. CydCD were proposed to determine a heterooligomeric complex important for heme export into the periplasm or to be involved in the maintenance of the proper redox state of the periplasmic space. In Bacillus subtilius, the absence of CydCD does not affect the presence of halo-cytochrome c in the membrane and this observation suggests that CydCD proteins are not involved in the export of heme in this organism.
Probab=96.33 E-value=0.018 Score=54.38 Aligned_cols=127 Identities=17% Similarity=0.148 Sum_probs=64.0
Q ss_pred HhcCCEEEEEcCCCCcHHHHHHHHHHhccccCCCeEEEEeCchHHHHHHHHHHHHHHhCCeeeeEEeeeeeccc---cCC
Q 006122 62 VETHATTIIVGETGSGKTTQIPQYLKEAGWADGGRVIACTQPRRLAVQAVASRVAEEMGVKVGEEVGYTIRFED---FTN 138 (660)
Q Consensus 62 l~~~~~vii~apTGsGKT~~ip~~l~~~~~~~~~~~i~v~p~r~la~~~~~~~~~~~~~~~~~~~vg~~~~~~~---~~~ 138 (660)
+..++.+.|.||+||||||++-.+.-.... ..+. |.+ .-..+... ...... .+||..+... ...
T Consensus 25 i~~Ge~~~i~G~nGsGKStLl~~l~G~~~~-~~G~-i~~-~g~~~~~~--~~~~~~--------~i~~~~q~~~~~~~tv 91 (178)
T cd03247 25 LKQGEKIALLGRSGSGKSTLLQLLTGDLKP-QQGE-ITL-DGVPVSDL--EKALSS--------LISVLNQRPYLFDTTL 91 (178)
T ss_pred EcCCCEEEEECCCCCCHHHHHHHHhccCCC-CCCE-EEE-CCEEHHHH--HHHHHh--------hEEEEccCCeeecccH
Confidence 357899999999999999988766544322 2333 322 22222211 111111 1222211100 000
Q ss_pred CCCceEEEechHHHHHHHhcCCCCCCCcEEEEeCCCcCCcChhHHHHHHHHHHHhcCCceEEEee
Q 006122 139 KDLTAIKFLTDGVLLREMMDDPLLTKYSVIMVDEAHERSISTDILLGLLKKIQRCRSDLRLIISS 203 (660)
Q Consensus 139 ~~~~~I~v~T~~~ll~~l~~~~~l~~~~~iIiDE~Her~~~~d~ll~~l~~~~~~~~~~kii~~S 203 (660)
.++. +.-.+.|...+......++.+.+++|+||.= .+++......+.+.+.....+.-+|+.|
T Consensus 92 ~~~i-~~~LS~G~~qrv~laral~~~p~~lllDEP~-~~LD~~~~~~l~~~l~~~~~~~tii~~s 154 (178)
T cd03247 92 RNNL-GRRFSGGERQRLALARILLQDAPIVLLDEPT-VGLDPITERQLLSLIFEVLKDKTLIWIT 154 (178)
T ss_pred HHhh-cccCCHHHHHHHHHHHHHhcCCCEEEEECCc-ccCCHHHHHHHHHHHHHHcCCCEEEEEe
Confidence 0000 2223445544444444456778999999987 5677666555555555443343344433
No 257
>KOG0388 consensus SNF2 family DNA-dependent ATPase [Replication, recombination and repair]
Probab=96.31 E-value=0.017 Score=63.07 Aligned_cols=116 Identities=21% Similarity=0.241 Sum_probs=94.2
Q ss_pred CCCCcEEEEcCCHHHHHHHHHHHHHHhhhccCCCCCeEEEEccCCCCHHHHhhhcCCCCCCCc-EEEEeCCCcccccCCC
Q 006122 274 EPPGDILVFLTGQDDIDATIQLLTEEARTSKKNSSGLIILPLYSGLSRAEQEQVFSPTPRGKR-KVVISTNIAETSLTLE 352 (660)
Q Consensus 274 ~~~~~iLVF~~~~~~i~~l~~~L~~~~~~~~~~~~~~~v~~lh~~l~~~~r~~v~~~f~~g~~-~vlvaT~i~e~Gidip 352 (660)
..+..+|+|+.-.+.+..+.++|.-. ++.-+.+.|+....+|..++.++....+ -.+++|-..+.|||+.
T Consensus 1042 aegHRvL~yfQMTkM~dl~EdYl~yr---------~Y~ylRLDGSsk~~dRrd~vrDwQ~sdiFvFLLSTRAGGLGINLT 1112 (1185)
T KOG0388|consen 1042 AEGHRVLMYFQMTKMIDLIEDYLVYR---------GYTYLRLDGSSKASDRRDVVRDWQASDIFVFLLSTRAGGLGINLT 1112 (1185)
T ss_pred cCCceEEehhHHHHHHHHHHHHHHhh---------ccceEEecCcchhhHHHHHHhhccCCceEEEEEecccCccccccc
Confidence 34567899988888887777777655 7888899999999999999999987554 4588999999999999
Q ss_pred CeEEEEeCCCccceeecCCCCcccceeeecCHHhHHHhhcccCCCCCcEEEEccChHHhhh
Q 006122 353 GIVYVVDSGFSKQRFYNPISDIENLVVAPISKASARQRAGRAGRVRPGKCYRLYTEEYFVK 413 (660)
Q Consensus 353 ~v~~VId~g~~k~~~~~~~~~~~~l~~~~~s~~~~~QR~GRaGR~~~G~~~~l~~~~~~~~ 413 (660)
..+.||. ||+..+ |.--.+++-|+-|.|.++.-.+|+|+++...+.
T Consensus 1113 AADTViF--------YdSDWN-------PT~D~QAMDRAHRLGQTrdvtvyrl~~rgTvEE 1158 (1185)
T KOG0388|consen 1113 AADTVIF--------YDSDWN-------PTADQQAMDRAHRLGQTRDVTVYRLITRGTVEE 1158 (1185)
T ss_pred ccceEEE--------ecCCCC-------cchhhHHHHHHHhccCccceeeeeecccccHHH
Confidence 9999997 666554 444567777888888888889999999877665
No 258
>PRK08939 primosomal protein DnaI; Reviewed
Probab=96.31 E-value=0.095 Score=53.97 Aligned_cols=115 Identities=12% Similarity=0.158 Sum_probs=62.7
Q ss_pred cCCEEEEEcCCCCcHHHHHHHHHHhccccCCCeEEEEeCchHHHHHHHHHHHHHHhCCeeeeEEeeeeeccccCCCCCce
Q 006122 64 THATTIIVGETGSGKTTQIPQYLKEAGWADGGRVIACTQPRRLAVQAVASRVAEEMGVKVGEEVGYTIRFEDFTNKDLTA 143 (660)
Q Consensus 64 ~~~~vii~apTGsGKT~~ip~~l~~~~~~~~~~~i~v~p~r~la~~~~~~~~~~~~~~~~~~~vg~~~~~~~~~~~~~~~ 143 (660)
.++.+++.||+|+|||+++-.+..+.. ..+..+.++.-| .+. ..+....+ . .
T Consensus 155 ~~~gl~L~G~~G~GKThLa~Aia~~l~-~~g~~v~~~~~~-~l~-----~~lk~~~~------------------~-~-- 206 (306)
T PRK08939 155 KVKGLYLYGDFGVGKSYLLAAIANELA-KKGVSSTLLHFP-EFI-----RELKNSIS------------------D-G-- 206 (306)
T ss_pred CCCeEEEECCCCCCHHHHHHHHHHHHH-HcCCCEEEEEHH-HHH-----HHHHHHHh------------------c-C--
Confidence 356799999999999988877666654 334445555544 222 22222111 0 0
Q ss_pred EEEechHHHHHHHhcCCCCCCCcEEEEeCCCcCCcChhHHHHHHHHHHHhc-CCceEEEeecccchHHHHHHhh
Q 006122 144 IKFLTDGVLLREMMDDPLLTKYSVIMVDEAHERSISTDILLGLLKKIQRCR-SDLRLIISSATIEAKSMSAFFH 216 (660)
Q Consensus 144 I~v~T~~~ll~~l~~~~~l~~~~~iIiDE~Her~~~~d~ll~~l~~~~~~~-~~~kii~~SAT~~~~~~~~~~~ 216 (660)
+....++. +.+++++||||+.--....-....++..+...| ..-+-.++|.-++.+.+.+.|.
T Consensus 207 ----~~~~~l~~------l~~~dlLiIDDiG~e~~s~~~~~~ll~~Il~~R~~~~~~ti~TSNl~~~el~~~~~ 270 (306)
T PRK08939 207 ----SVKEKIDA------VKEAPVLMLDDIGAEQMSSWVRDEVLGVILQYRMQEELPTFFTSNFDFDELEHHLA 270 (306)
T ss_pred ----cHHHHHHH------hcCCCEEEEecCCCccccHHHHHHHHHHHHHHHHHCCCeEEEECCCCHHHHHHHHh
Confidence 11223332 557899999999833332222223444443322 1223445555667777877773
No 259
>PRK14961 DNA polymerase III subunits gamma and tau; Provisional
Probab=96.30 E-value=0.024 Score=60.15 Aligned_cols=50 Identities=22% Similarity=0.493 Sum_probs=30.3
Q ss_pred HHHHHhcCCCCCCCcEEEEeCCCcCCcChhHHHHHHHHHHHhcCCceEEEee
Q 006122 152 LLREMMDDPLLTKYSVIMVDEAHERSISTDILLGLLKKIQRCRSDLRLIISS 203 (660)
Q Consensus 152 ll~~l~~~~~l~~~~~iIiDE~Her~~~~d~ll~~l~~~~~~~~~~kii~~S 203 (660)
+...+...+...++.++||||+|. +..+....+++.+....+..++|+.+
T Consensus 107 i~~~~~~~p~~~~~kviIIDEa~~--l~~~a~naLLk~lEe~~~~~~fIl~t 156 (363)
T PRK14961 107 ILDNIYYSPSKSRFKVYLIDEVHM--LSRHSFNALLKTLEEPPQHIKFILAT 156 (363)
T ss_pred HHHHHhcCcccCCceEEEEEChhh--cCHHHHHHHHHHHhcCCCCeEEEEEc
Confidence 333444445566789999999994 33344555666665544555566543
No 260
>cd03221 ABCF_EF-3 ABCF_EF-3 Elongation factor 3 (EF-3) is a cytosolic protein required by fungal ribosomes for in vitro protein synthesis and for in vivo growth. EF-3 stimulates the binding of the EF-1: GTP: aa-tRNA ternary complex to the ribosomal A site by facilitated release of the deacylated tRNA from the E site. The reaction requires ATP hydrolysis. EF-3 contains two ATP nucleotide binding sequence (NBS) motifs. NBSI is sufficient for the intrinsic ATPase activity. NBSII is essential for the ribosome-stimulated functions.
Probab=96.28 E-value=0.024 Score=51.52 Aligned_cols=94 Identities=20% Similarity=0.338 Sum_probs=56.1
Q ss_pred HhcCCEEEEEcCCCCcHHHHHHHHHHhccccCCCeEEEEeCchHHHHHHHHHHHHHHhCCeeeeEEeeeeeccccCCCCC
Q 006122 62 VETHATTIIVGETGSGKTTQIPQYLKEAGWADGGRVIACTQPRRLAVQAVASRVAEEMGVKVGEEVGYTIRFEDFTNKDL 141 (660)
Q Consensus 62 l~~~~~vii~apTGsGKT~~ip~~l~~~~~~~~~~~i~v~p~r~la~~~~~~~~~~~~~~~~~~~vg~~~~~~~~~~~~~ 141 (660)
+..++.+.|.||+|+||||++-.+.-.... ..+. |.+- .+ ..++|...
T Consensus 23 ~~~Ge~~~i~G~nGsGKStLl~~l~G~~~~-~~G~-i~~~-~~--------------------~~i~~~~~--------- 70 (144)
T cd03221 23 INPGDRIGLVGRNGAGKSTLLKLIAGELEP-DEGI-VTWG-ST--------------------VKIGYFEQ--------- 70 (144)
T ss_pred ECCCCEEEEECCCCCCHHHHHHHHcCCCCC-CceE-EEEC-Ce--------------------EEEEEEcc---------
Confidence 357899999999999999888765443321 1222 3221 10 12333221
Q ss_pred ceEEEechHHHHHHHhcCCCCCCCcEEEEeCCCcCCcChhHHHHHHHHHHHh
Q 006122 142 TAIKFLTDGVLLREMMDDPLLTKYSVIMVDEAHERSISTDILLGLLKKIQRC 193 (660)
Q Consensus 142 ~~I~v~T~~~ll~~l~~~~~l~~~~~iIiDE~Her~~~~d~ll~~l~~~~~~ 193 (660)
.+.|...+......+..+.+++|+||-- .+++.+....+.+.+...
T Consensus 71 -----lS~G~~~rv~laral~~~p~illlDEP~-~~LD~~~~~~l~~~l~~~ 116 (144)
T cd03221 71 -----LSGGEKMRLALAKLLLENPNLLLLDEPT-NHLDLESIEALEEALKEY 116 (144)
T ss_pred -----CCHHHHHHHHHHHHHhcCCCEEEEeCCc-cCCCHHHHHHHHHHHHHc
Confidence 4555554444444446677999999987 567776665555555443
No 261
>cd00267 ABC_ATPase ABC (ATP-binding cassette) transporter nucleotide-binding domain; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=96.27 E-value=0.02 Score=52.75 Aligned_cols=123 Identities=20% Similarity=0.269 Sum_probs=62.0
Q ss_pred hcCCEEEEEcCCCCcHHHHHHHHHHhccccCCCeEEEEeCchHHHHHHHHHHHHHHhCCeeeeEEeeeeeccccCCCCCc
Q 006122 63 ETHATTIIVGETGSGKTTQIPQYLKEAGWADGGRVIACTQPRRLAVQAVASRVAEEMGVKVGEEVGYTIRFEDFTNKDLT 142 (660)
Q Consensus 63 ~~~~~vii~apTGsGKT~~ip~~l~~~~~~~~~~~i~v~p~r~la~~~~~~~~~~~~~~~~~~~vg~~~~~~~~~~~~~~ 142 (660)
.+++.+.|.|++|+||||++-.+...... ..+. |.+-. ..+.... ..+.. ..++|..+
T Consensus 23 ~~g~~~~i~G~nGsGKStll~~l~g~~~~-~~G~-i~~~~-~~~~~~~-~~~~~--------~~i~~~~q---------- 80 (157)
T cd00267 23 KAGEIVALVGPNGSGKSTLLRAIAGLLKP-TSGE-ILIDG-KDIAKLP-LEELR--------RRIGYVPQ---------- 80 (157)
T ss_pred cCCCEEEEECCCCCCHHHHHHHHhCCCCC-CccE-EEECC-EEcccCC-HHHHH--------hceEEEee----------
Confidence 57889999999999999888766543321 1222 22211 1111000 00000 01222111
Q ss_pred eEEEechHHHHHHHhcCCCCCCCcEEEEeCCCcCCcChhHHHHHHHHHHHhcCC-ceEEEeecccchHHHHHH
Q 006122 143 AIKFLTDGVLLREMMDDPLLTKYSVIMVDEAHERSISTDILLGLLKKIQRCRSD-LRLIISSATIEAKSMSAF 214 (660)
Q Consensus 143 ~I~v~T~~~ll~~l~~~~~l~~~~~iIiDE~Her~~~~d~ll~~l~~~~~~~~~-~kii~~SAT~~~~~~~~~ 214 (660)
.+.|...+.........+..++|+||.- .+++......+.+.+.....+ ..+++. |-+.+.+..+
T Consensus 81 ----lS~G~~~r~~l~~~l~~~~~i~ilDEp~-~~lD~~~~~~l~~~l~~~~~~~~tii~~--sh~~~~~~~~ 146 (157)
T cd00267 81 ----LSGGQRQRVALARALLLNPDLLLLDEPT-SGLDPASRERLLELLRELAEEGRTVIIV--THDPELAELA 146 (157)
T ss_pred ----CCHHHHHHHHHHHHHhcCCCEEEEeCCC-cCCCHHHHHHHHHHHHHHHHCCCEEEEE--eCCHHHHHHh
Confidence 3444444333333334557999999998 677776666555555543322 333333 3344444444
No 262
>COG0552 FtsY Signal recognition particle GTPase [Intracellular trafficking and secretion]
Probab=96.26 E-value=0.054 Score=55.04 Aligned_cols=134 Identities=28% Similarity=0.304 Sum_probs=82.5
Q ss_pred CEEEEEcCCCCcHHHHHHHHHHhccccCCCeE-EEEeCchHHHHHHHHHHHHHHhCCeeeeEEeeeeeccccCCCCCceE
Q 006122 66 ATTIIVGETGSGKTTQIPQYLKEAGWADGGRV-IACTQPRRLAVQAVASRVAEEMGVKVGEEVGYTIRFEDFTNKDLTAI 144 (660)
Q Consensus 66 ~~vii~apTGsGKT~~ip~~l~~~~~~~~~~~-i~v~p~r~la~~~~~~~~~~~~~~~~~~~vg~~~~~~~~~~~~~~~I 144 (660)
.+++++|-.|+||||-|..+..... ..+.++ +.-.-|-|.+|....+-.++..|+.+-.. . ...+.+.|
T Consensus 140 ~Vil~vGVNG~GKTTTIaKLA~~l~-~~g~~VllaA~DTFRAaAiEQL~~w~er~gv~vI~~-------~--~G~DpAaV 209 (340)
T COG0552 140 FVILFVGVNGVGKTTTIAKLAKYLK-QQGKSVLLAAGDTFRAAAIEQLEVWGERLGVPVISG-------K--EGADPAAV 209 (340)
T ss_pred EEEEEEecCCCchHhHHHHHHHHHH-HCCCeEEEEecchHHHHHHHHHHHHHHHhCCeEEcc-------C--CCCCcHHH
Confidence 4678899999999998887776553 234444 44456667777766666677776654221 1 11112334
Q ss_pred EEechHHHHHHHhcCCCCCCCcEEEEeCCCcCCcChhHHHHHHHHHHH-hcCCc------eEEEeeccc--chHHHHHHh
Q 006122 145 KFLTDGVLLREMMDDPLLTKYSVIMVDEAHERSISTDILLGLLKKIQR-CRSDL------RLIISSATI--EAKSMSAFF 215 (660)
Q Consensus 145 ~v~T~~~ll~~l~~~~~l~~~~~iIiDE~Her~~~~d~ll~~l~~~~~-~~~~~------kii~~SAT~--~~~~~~~~~ 215 (660)
+|-.-+.. .-+++++|++|=|- |..+..-|+.-++++.+ ..+.. .++.+=||. |.-.-++.|
T Consensus 210 afDAi~~A--------kar~~DvvliDTAG-RLhnk~nLM~EL~KI~rV~~k~~~~ap~e~llvlDAttGqnal~QAk~F 280 (340)
T COG0552 210 AFDAIQAA--------KARGIDVVLIDTAG-RLHNKKNLMDELKKIVRVIKKDDPDAPHEILLVLDATTGQNALSQAKIF 280 (340)
T ss_pred HHHHHHHH--------HHcCCCEEEEeCcc-cccCchhHHHHHHHHHHHhccccCCCCceEEEEEEcccChhHHHHHHHH
Confidence 33332222 24589999999999 77666666666666655 23333 455568998 554556677
Q ss_pred hcC
Q 006122 216 HAR 218 (660)
Q Consensus 216 ~~~ 218 (660)
+..
T Consensus 281 ~ea 283 (340)
T COG0552 281 NEA 283 (340)
T ss_pred HHh
Confidence 664
No 263
>TIGR00362 DnaA chromosomal replication initiator protein DnaA. DnaA is involved in DNA biosynthesis; initiation of chromosome replication and can also be transcription regulator. The C-terminal of the family hits the pfam bacterial DnaA (bac_dnaA) domain family. For a review, see Kaguni (2006).
Probab=96.24 E-value=0.028 Score=60.67 Aligned_cols=36 Identities=22% Similarity=0.213 Sum_probs=22.7
Q ss_pred CEEEEEcCCCCcHHHHHHHHHHhcccc-CCCeEEEEe
Q 006122 66 ATTIIVGETGSGKTTQIPQYLKEAGWA-DGGRVIACT 101 (660)
Q Consensus 66 ~~vii~apTGsGKT~~ip~~l~~~~~~-~~~~~i~v~ 101 (660)
+.+++.||+|+|||.++-.+..+.... .+..++++.
T Consensus 137 n~l~l~G~~G~GKThL~~ai~~~l~~~~~~~~v~yi~ 173 (405)
T TIGR00362 137 NPLFIYGGVGLGKTHLLHAIGNEILENNPNAKVVYVS 173 (405)
T ss_pred CeEEEECCCCCcHHHHHHHHHHHHHHhCCCCcEEEEE
Confidence 468999999999997775444433211 134455553
No 264
>PRK06645 DNA polymerase III subunits gamma and tau; Validated
Probab=96.23 E-value=0.024 Score=62.24 Aligned_cols=55 Identities=25% Similarity=0.385 Sum_probs=31.9
Q ss_pred HHHHHhcCCCCCCCcEEEEeCCCcCCcChhHHHHHHHHHHHhcCCceEEEeecccchHH
Q 006122 152 LLREMMDDPLLTKYSVIMVDEAHERSISTDILLGLLKKIQRCRSDLRLIISSATIEAKS 210 (660)
Q Consensus 152 ll~~l~~~~~l~~~~~iIiDE~Her~~~~d~ll~~l~~~~~~~~~~kii~~SAT~~~~~ 210 (660)
++......|...++.++||||+|. +.......+++.+....+...+| -+|-+.+.
T Consensus 116 iie~a~~~P~~~~~KVvIIDEa~~--Ls~~a~naLLk~LEepp~~~vfI--~aTte~~k 170 (507)
T PRK06645 116 IIESAEYKPLQGKHKIFIIDEVHM--LSKGAFNALLKTLEEPPPHIIFI--FATTEVQK 170 (507)
T ss_pred HHHHHHhccccCCcEEEEEEChhh--cCHHHHHHHHHHHhhcCCCEEEE--EEeCChHH
Confidence 444445566778899999999994 33445555666555433333333 34434433
No 265
>PRK06921 hypothetical protein; Provisional
Probab=96.23 E-value=0.092 Score=52.98 Aligned_cols=38 Identities=24% Similarity=0.314 Sum_probs=26.2
Q ss_pred cCCEEEEEcCCCCcHHHHHHHHHHhccccCCCeEEEEe
Q 006122 64 THATTIIVGETGSGKTTQIPQYLKEAGWADGGRVIACT 101 (660)
Q Consensus 64 ~~~~vii~apTGsGKT~~ip~~l~~~~~~~~~~~i~v~ 101 (660)
.+..+++.|++|+|||+++-.+..+.....+..+++++
T Consensus 116 ~~~~l~l~G~~G~GKThLa~aia~~l~~~~g~~v~y~~ 153 (266)
T PRK06921 116 RKNSIALLGQPGSGKTHLLTAAANELMRKKGVPVLYFP 153 (266)
T ss_pred CCCeEEEECCCCCcHHHHHHHHHHHHhhhcCceEEEEE
Confidence 46789999999999998877666554321144555554
No 266
>PRK14087 dnaA chromosomal replication initiation protein; Provisional
Probab=96.12 E-value=0.058 Score=58.76 Aligned_cols=37 Identities=22% Similarity=0.148 Sum_probs=23.1
Q ss_pred CEEEEEcCCCCcHHHHHHHHHHhccc-cCCCeEEEEeC
Q 006122 66 ATTIIVGETGSGKTTQIPQYLKEAGW-ADGGRVIACTQ 102 (660)
Q Consensus 66 ~~vii~apTGsGKT~~ip~~l~~~~~-~~~~~~i~v~p 102 (660)
+.+++.|++|+|||+++-.+..+... .++.++++++.
T Consensus 142 npl~i~G~~G~GKTHLl~Ai~~~l~~~~~~~~v~yv~~ 179 (450)
T PRK14087 142 NPLFIYGESGMGKTHLLKAAKNYIESNFSDLKVSYMSG 179 (450)
T ss_pred CceEEECCCCCcHHHHHHHHHHHHHHhCCCCeEEEEEH
Confidence 45899999999999877544433221 23344555443
No 267
>PF05621 TniB: Bacterial TniB protein; InterPro: IPR008868 This family consists of several bacterial TniB NTP-binding proteins. TniB is a probable ATP-binding protein [] which is involved in Tn5053 mercury resistance transposition [].
Probab=96.11 E-value=0.035 Score=56.01 Aligned_cols=70 Identities=21% Similarity=0.268 Sum_probs=40.7
Q ss_pred HHHHHHHHHHHhc---------CCEEEEEcCCCCcHHHHHHHHHHhccccCC-----CeEEEE-eCchHHHHHHHHHHHH
Q 006122 52 YKYRTAILYLVET---------HATTIIVGETGSGKTTQIPQYLKEAGWADG-----GRVIAC-TQPRRLAVQAVASRVA 116 (660)
Q Consensus 52 ~~~~~~i~~~l~~---------~~~vii~apTGsGKT~~ip~~l~~~~~~~~-----~~~i~v-~p~r~la~~~~~~~~~ 116 (660)
|..-+++++.++. -.+++|+|+||.|||+++-.+......... .+++++ +||. -....+...+.
T Consensus 39 Y~~A~~~L~~L~~Ll~~P~~~Rmp~lLivG~snnGKT~Ii~rF~~~hp~~~d~~~~~~PVv~vq~P~~-p~~~~~Y~~IL 117 (302)
T PF05621_consen 39 YPRAKEALDRLEELLEYPKRHRMPNLLIVGDSNNGKTMIIERFRRLHPPQSDEDAERIPVVYVQMPPE-PDERRFYSAIL 117 (302)
T ss_pred CHHHHHHHHHHHHHHhCCcccCCCceEEecCCCCcHHHHHHHHHHHCCCCCCCCCccccEEEEecCCC-CChHHHHHHHH
Confidence 4445556655532 257999999999999999888765532221 123333 3333 22224455555
Q ss_pred HHhCCe
Q 006122 117 EEMGVK 122 (660)
Q Consensus 117 ~~~~~~ 122 (660)
..++..
T Consensus 118 ~~lgaP 123 (302)
T PF05621_consen 118 EALGAP 123 (302)
T ss_pred HHhCcc
Confidence 566543
No 268
>TIGR02928 orc1/cdc6 family replication initiation protein. Members of this protein family are found exclusively in the archaea. This set of DNA binding proteins shows homology to the origin recognition complex subunit 1/cell division control protein 6 family in eukaryotes. Several members may be found in genome and interact with each other.
Probab=96.07 E-value=0.026 Score=60.01 Aligned_cols=23 Identities=39% Similarity=0.593 Sum_probs=18.6
Q ss_pred CEEEEEcCCCCcHHHHHHHHHHh
Q 006122 66 ATTIIVGETGSGKTTQIPQYLKE 88 (660)
Q Consensus 66 ~~vii~apTGsGKT~~ip~~l~~ 88 (660)
..++|.||+|+|||+++-.++..
T Consensus 41 ~~i~I~G~~GtGKT~l~~~~~~~ 63 (365)
T TIGR02928 41 SNVFIYGKTGTGKTAVTKYVMKE 63 (365)
T ss_pred CcEEEECCCCCCHHHHHHHHHHH
Confidence 57999999999999777655543
No 269
>PRK07471 DNA polymerase III subunit delta'; Validated
Probab=96.07 E-value=0.041 Score=58.10 Aligned_cols=63 Identities=19% Similarity=0.159 Sum_probs=41.0
Q ss_pred ceEEEechHHHHHHHhcCCCCCCCcEEEEeCCCcCCcChhHHHHHHHHHHHhcCCceEEEeeccc
Q 006122 142 TAIKFLTDGVLLREMMDDPLLTKYSVIMVDEAHERSISTDILLGLLKKIQRCRSDLRLIISSATI 206 (660)
Q Consensus 142 ~~I~v~T~~~ll~~l~~~~~l~~~~~iIiDE~Her~~~~d~ll~~l~~~~~~~~~~kii~~SAT~ 206 (660)
..|.|-.-..+.+.+...+....+.+|||||+|. .+......++|.+..-.++..+|++|...
T Consensus 119 ~~I~VdqiR~l~~~~~~~~~~~~~kVviIDead~--m~~~aanaLLK~LEepp~~~~~IL~t~~~ 181 (365)
T PRK07471 119 TVITVDEVRELISFFGLTAAEGGWRVVIVDTADE--MNANAANALLKVLEEPPARSLFLLVSHAP 181 (365)
T ss_pred ccccHHHHHHHHHHhCcCcccCCCEEEEEechHh--cCHHHHHHHHHHHhcCCCCeEEEEEECCc
Confidence 3455444444555555555677889999999993 45667777887776555555566655443
No 270
>cd03216 ABC_Carb_Monos_I This family represents the domain I of the carbohydrate uptake proteins that transport only monosaccharides (Monos). The Carb_Monos family is involved in the uptake of monosaccharides, such as pentoses (such as xylose, arabinose, and ribose) and hexoses (such as xylose, arabinose, and ribose), that cannot be broken down to simple sugars by hydrolysis. Pentoses include xylose, arabinose, and ribose. Important hexoses include glucose, galactose, and fructose. In members of the Carb_monos family, the single hydrophobic gene product forms a homodimer while the ABC protein represents a fusion of two nucleotide-binding domains. However, it is assumed that two copies of the ABC domains are present in the assembled transporter.
Probab=96.02 E-value=0.043 Score=50.98 Aligned_cols=127 Identities=17% Similarity=0.224 Sum_probs=66.5
Q ss_pred HhcCCEEEEEcCCCCcHHHHHHHHHHhccccCCCeEEEEeCchHHHHHHHHHHHHHHhCCeeeeEEeeeeeccccCCCCC
Q 006122 62 VETHATTIIVGETGSGKTTQIPQYLKEAGWADGGRVIACTQPRRLAVQAVASRVAEEMGVKVGEEVGYTIRFEDFTNKDL 141 (660)
Q Consensus 62 l~~~~~vii~apTGsGKT~~ip~~l~~~~~~~~~~~i~v~p~r~la~~~~~~~~~~~~~~~~~~~vg~~~~~~~~~~~~~ 141 (660)
+..++.+.|.||.||||||++-.+.-.... ..+. |.+- -..+......+ ... ..+||...
T Consensus 23 i~~Ge~~~l~G~nGsGKSTLl~~i~G~~~~-~~G~-v~~~-g~~~~~~~~~~----~~~----~~i~~~~q--------- 82 (163)
T cd03216 23 VRRGEVHALLGENGAGKSTLMKILSGLYKP-DSGE-ILVD-GKEVSFASPRD----ARR----AGIAMVYQ--------- 82 (163)
T ss_pred EeCCCEEEEECCCCCCHHHHHHHHhCCCCC-CCeE-EEEC-CEECCcCCHHH----HHh----cCeEEEEe---------
Confidence 467899999999999999998766543321 2232 3221 11111000000 000 11232211
Q ss_pred ceEEEechHHHHHHHhcCCCCCCCcEEEEeCCCcCCcChhHHHHHHHHHHHhcC-CceEEEeecccchHHHHHHhh
Q 006122 142 TAIKFLTDGVLLREMMDDPLLTKYSVIMVDEAHERSISTDILLGLLKKIQRCRS-DLRLIISSATIEAKSMSAFFH 216 (660)
Q Consensus 142 ~~I~v~T~~~ll~~l~~~~~l~~~~~iIiDE~Her~~~~d~ll~~l~~~~~~~~-~~kii~~SAT~~~~~~~~~~~ 216 (660)
.+.|...+......++.+.+++++||-= .+++.+....+.+.+..... +.-+|+. |-+.+.+.++.+
T Consensus 83 -----LS~G~~qrl~laral~~~p~illlDEP~-~~LD~~~~~~l~~~l~~~~~~~~tiii~--sh~~~~~~~~~d 150 (163)
T cd03216 83 -----LSVGERQMVEIARALARNARLLILDEPT-AALTPAEVERLFKVIRRLRAQGVAVIFI--SHRLDEVFEIAD 150 (163)
T ss_pred -----cCHHHHHHHHHHHHHhcCCCEEEEECCC-cCCCHHHHHHHHHHHHHHHHCCCEEEEE--eCCHHHHHHhCC
Confidence 4555554444444446677999999987 57777666655555544322 3333333 444444444433
No 271
>PRK14952 DNA polymerase III subunits gamma and tau; Provisional
Probab=96.01 E-value=0.042 Score=61.45 Aligned_cols=49 Identities=27% Similarity=0.415 Sum_probs=32.7
Q ss_pred HHHHhcCCCCCCCcEEEEeCCCcCCcChhHHHHHHHHHHHhcCCceEEEee
Q 006122 153 LREMMDDPLLTKYSVIMVDEAHERSISTDILLGLLKKIQRCRSDLRLIISS 203 (660)
Q Consensus 153 l~~l~~~~~l~~~~~iIiDE~Her~~~~d~ll~~l~~~~~~~~~~kii~~S 203 (660)
...+...+...++.++||||+|. +..+....+++.+..-.+...+|+.+
T Consensus 107 ~~~~~~~P~~~~~KVvIIDEah~--Lt~~A~NALLK~LEEpp~~~~fIL~t 155 (584)
T PRK14952 107 RDRAFYAPAQSRYRIFIVDEAHM--VTTAGFNALLKIVEEPPEHLIFIFAT 155 (584)
T ss_pred HHHHHhhhhcCCceEEEEECCCc--CCHHHHHHHHHHHhcCCCCeEEEEEe
Confidence 33444455677899999999993 45566777777776555555555544
No 272
>PF13177 DNA_pol3_delta2: DNA polymerase III, delta subunit; PDB: 1NJF_B 3GLG_G 1XXH_I 1NJG_A 3GLF_B 3GLI_G 1IQP_E 2GNO_A 1SXJ_E 1A5T_A ....
Probab=96.00 E-value=0.029 Score=52.05 Aligned_cols=131 Identities=19% Similarity=0.227 Sum_probs=67.6
Q ss_pred HHHHHhcC---CEEEEEcCCCCcHHHHHHHHHHhccccCCCeEEEEeCchHHHHHHHHHHHHHHhCCeeeeEEeeeeecc
Q 006122 58 ILYLVETH---ATTIIVGETGSGKTTQIPQYLKEAGWADGGRVIACTQPRRLAVQAVASRVAEEMGVKVGEEVGYTIRFE 134 (660)
Q Consensus 58 i~~~l~~~---~~vii~apTGsGKT~~ip~~l~~~~~~~~~~~i~v~p~r~la~~~~~~~~~~~~~~~~~~~vg~~~~~~ 134 (660)
+..++.++ +.+++.||.|+||++.+-.++........... .|..- ...+.+.......+... .
T Consensus 9 L~~~~~~~~l~ha~L~~G~~g~gk~~~a~~~a~~ll~~~~~~~-~c~~c------~~c~~~~~~~~~d~~~~-------~ 74 (162)
T PF13177_consen 9 LKNLIKSGRLPHALLFHGPSGSGKKTLALAFARALLCSNPNED-PCGEC------RSCRRIEEGNHPDFIII-------K 74 (162)
T ss_dssp HHHHHHCTC--SEEEEECSTTSSHHHHHHHHHHHHC-TT-CTT---SSS------HHHHHHHTT-CTTEEEE-------E
T ss_pred HHHHHHcCCcceeEEEECCCCCCHHHHHHHHHHHHcCCCCCCC-CCCCC------HHHHHHHhccCcceEEE-------e
Confidence 34445554 45899999999999887766654422111100 11111 11111111111111100 0
Q ss_pred ccCCCCCceEEEechHHHHHHHhcCCCCCCCcEEEEeCCCcCCcChhHHHHHHHHHHHhcCCceEEEeeccc
Q 006122 135 DFTNKDLTAIKFLTDGVLLREMMDDPLLTKYSVIMVDEAHERSISTDILLGLLKKIQRCRSDLRLIISSATI 206 (660)
Q Consensus 135 ~~~~~~~~~I~v~T~~~ll~~l~~~~~l~~~~~iIiDE~Her~~~~d~ll~~l~~~~~~~~~~kii~~SAT~ 206 (660)
.. .. ...|.+-.-..+...+...+.-..+.++||||+| .+..+...+++|.+..-..+..+|+++-.+
T Consensus 75 ~~-~~-~~~i~i~~ir~i~~~~~~~~~~~~~KviiI~~ad--~l~~~a~NaLLK~LEepp~~~~fiL~t~~~ 142 (162)
T PF13177_consen 75 PD-KK-KKSIKIDQIREIIEFLSLSPSEGKYKVIIIDEAD--KLTEEAQNALLKTLEEPPENTYFILITNNP 142 (162)
T ss_dssp TT-TS-SSSBSHHHHHHHHHHCTSS-TTSSSEEEEEETGG--GS-HHHHHHHHHHHHSTTTTEEEEEEES-G
T ss_pred cc-cc-cchhhHHHHHHHHHHHHHHHhcCCceEEEeehHh--hhhHHHHHHHHHHhcCCCCCEEEEEEECCh
Confidence 00 00 1123333333444454555556789999999999 456678888888887776777777777654
No 273
>KOG1805 consensus DNA replication helicase [Replication, recombination and repair]
Probab=96.00 E-value=0.01 Score=67.26 Aligned_cols=62 Identities=27% Similarity=0.345 Sum_probs=44.3
Q ss_pred HHHHHHHHHHhcCCEEEEEcCCCCcHHHHHHHHHHhccccCCCeEEEEeCchHHHHHHHHHHHH
Q 006122 53 KYRTAILYLVETHATTIIVGETGSGKTTQIPQYLKEAGWADGGRVIACTQPRRLAVQAVASRVA 116 (660)
Q Consensus 53 ~~~~~i~~~l~~~~~vii~apTGsGKT~~ip~~l~~~~~~~~~~~i~v~p~r~la~~~~~~~~~ 116 (660)
.||+++..++...+..+|.|=+|+||||.+..++.... ..+.+ |+++--.-.|...+..++.
T Consensus 673 dQr~A~~k~L~aedy~LI~GMPGTGKTTtI~~LIkiL~-~~gkk-VLLtsyThsAVDNILiKL~ 734 (1100)
T KOG1805|consen 673 DQRQALLKALAAEDYALILGMPGTGKTTTISLLIKILV-ALGKK-VLLTSYTHSAVDNILIKLK 734 (1100)
T ss_pred HHHHHHHHHHhccchheeecCCCCCchhhHHHHHHHHH-HcCCe-EEEEehhhHHHHHHHHHHh
Confidence 56788888999999999999999999988876665542 23444 4455555566665555544
No 274
>TIGR00678 holB DNA polymerase III, delta' subunit. At position 126-127 of the seed alignment, this family lacks the HM motif of gamma/tau; at 132 it has a near-invariant A vs. an invariant F in gamma/tau.
Probab=95.98 E-value=0.054 Score=51.64 Aligned_cols=48 Identities=15% Similarity=0.240 Sum_probs=29.1
Q ss_pred HHHHhcCCCCCCCcEEEEeCCCcCCcChhHHHHHHHHHHHhcCCceEEEe
Q 006122 153 LREMMDDPLLTKYSVIMVDEAHERSISTDILLGLLKKIQRCRSDLRLIIS 202 (660)
Q Consensus 153 l~~l~~~~~l~~~~~iIiDE~Her~~~~d~ll~~l~~~~~~~~~~kii~~ 202 (660)
.+.+...+......+|||||+|.. ..+....+++.+....++..+|+.
T Consensus 85 ~~~~~~~~~~~~~kviiide~~~l--~~~~~~~Ll~~le~~~~~~~~il~ 132 (188)
T TIGR00678 85 VEFLSRTPQESGRRVVIIEDAERM--NEAAANALLKTLEEPPPNTLFILI 132 (188)
T ss_pred HHHHccCcccCCeEEEEEechhhh--CHHHHHHHHHHhcCCCCCeEEEEE
Confidence 455555666788899999999942 333444555555443334444444
No 275
>cd03246 ABCC_Protease_Secretion This family represents the ABC component of the protease secretion system PrtD, a 60-kDa integral membrane protein sharing 37% identity with HlyB, the ABC component of the alpha-hemolysin secretion pathway, in the C-terminal domain. They export degradative enzymes by using a type I protein secretion system and lack an N-terminal signal peptide, but contain a C-terminal secretion signal. The Type I secretion apparatus is made up of three components, an ABC transporter, a membrane fusion protein (MFP), and an outer membrane protein (OMP). For the HlyA transporter complex, HlyB (ABC transporter) and HlyD (MFP) reside in the inner membrane of E. coli. The OMP component is TolC, which is thought to interact with the MFP to form a continuous channel across the periplasm from the cytoplasm to the exterior. HlyB belongs to the family of ABC transporters, which are ubiquitous, ATP-dependent transmembrane pumps or channels. The spectrum of transport substra
Probab=95.96 E-value=0.032 Score=52.41 Aligned_cols=127 Identities=19% Similarity=0.259 Sum_probs=62.5
Q ss_pred HhcCCEEEEEcCCCCcHHHHHHHHHHhccccCCCeEEEEeCchHHHHHHHHHHHHHHhCCeeeeEEeeeeeccccCCCC-
Q 006122 62 VETHATTIIVGETGSGKTTQIPQYLKEAGWADGGRVIACTQPRRLAVQAVASRVAEEMGVKVGEEVGYTIRFEDFTNKD- 140 (660)
Q Consensus 62 l~~~~~vii~apTGsGKT~~ip~~l~~~~~~~~~~~i~v~p~r~la~~~~~~~~~~~~~~~~~~~vg~~~~~~~~~~~~- 140 (660)
+..++.+.|.||+||||||++-.+.-.... ..+. |.+ ..+.+..... ..... .++|...........
T Consensus 25 i~~Ge~~~i~G~nGsGKStLl~~l~G~~~~-~~G~-i~~-~g~~~~~~~~-~~~~~--------~i~~~~q~~~~~~~tv 92 (173)
T cd03246 25 IEPGESLAIIGPSGSGKSTLARLILGLLRP-TSGR-VRL-DGADISQWDP-NELGD--------HVGYLPQDDELFSGSI 92 (173)
T ss_pred ECCCCEEEEECCCCCCHHHHHHHHHhccCC-CCCe-EEE-CCEEcccCCH-HHHHh--------heEEECCCCccccCcH
Confidence 357899999999999999988766544322 2232 322 2211111000 00111 122221110000000
Q ss_pred CceEEEechHHHHHHHhcCCCCCCCcEEEEeCCCcCCcChhHHHHHHHHHHHhcC-CceEEEee
Q 006122 141 LTAIKFLTDGVLLREMMDDPLLTKYSVIMVDEAHERSISTDILLGLLKKIQRCRS-DLRLIISS 203 (660)
Q Consensus 141 ~~~I~v~T~~~ll~~l~~~~~l~~~~~iIiDE~Her~~~~d~ll~~l~~~~~~~~-~~kii~~S 203 (660)
.-.+ .+.|...+......++.+.+++|+||-= .+++......+.+.+..... +.-+|+.|
T Consensus 93 ~~~l--LS~G~~qrv~la~al~~~p~~lllDEPt-~~LD~~~~~~l~~~l~~~~~~~~tii~~s 153 (173)
T cd03246 93 AENI--LSGGQRQRLGLARALYGNPRILVLDEPN-SHLDVEGERALNQAIAALKAAGATRIVIA 153 (173)
T ss_pred HHHC--cCHHHHHHHHHHHHHhcCCCEEEEECCc-cccCHHHHHHHHHHHHHHHhCCCEEEEEe
Confidence 0011 4555555544444456778999999987 56776655555555444322 33344443
No 276
>COG2804 PulE Type II secretory pathway, ATPase PulE/Tfp pilus assembly pathway, ATPase PilB [Cell motility and secretion / Intracellular trafficking and secretion]
Probab=95.96 E-value=0.039 Score=59.17 Aligned_cols=42 Identities=31% Similarity=0.490 Sum_probs=28.5
Q ss_pred CCcHHHH-HHHHHHHhc-CCEEEEEcCCCCcHHHHHHHHHHhcc
Q 006122 49 LPVYKYR-TAILYLVET-HATTIIVGETGSGKTTQIPQYLKEAG 90 (660)
Q Consensus 49 lPi~~~~-~~i~~~l~~-~~~vii~apTGsGKT~~ip~~l~~~~ 90 (660)
|.....+ ..+...+.. +..++++|||||||||.+..++....
T Consensus 240 Lg~~~~~~~~~~~~~~~p~GliLvTGPTGSGKTTTLY~~L~~ln 283 (500)
T COG2804 240 LGMSPFQLARLLRLLNRPQGLILVTGPTGSGKTTTLYAALSELN 283 (500)
T ss_pred hCCCHHHHHHHHHHHhCCCeEEEEeCCCCCCHHHHHHHHHHHhc
Confidence 3334444 344444543 45789999999999988887776653
No 277
>PF00004 AAA: ATPase family associated with various cellular activities (AAA); InterPro: IPR003959 AAA ATPases (ATPases Associated with diverse cellular Activities) form a large protein family and play a number of roles in the cell including cell-cycle regulation, protein proteolysis and disaggregation, organelle biogenesis and intracellular transport. Some of them function as molecular chaperones, subunits of proteolytic complexes or independent proteases (FtsH, Lon). They also act as DNA helicases and transcription factors []. AAA ATPases belong to the AAA+ superfamily of ringshaped P-loop NTPases, which act via the energy-dependent unfolding of macromolecules [, ]. There are six major clades of AAA domains (proteasome subunits, metalloproteases, domains D1 and D2 of ATPases with two AAA domains, the MSP1/katanin/spastin group and BCS1 and it homologues), as well as a number of deeply branching minor clades []. They assemble into oligomeric assemblies (often hexamers) that form a ring-shaped structure with a central pore. These proteins produce a molecular motor that couples ATP binding and hydrolysis to changes in conformational states that act upon a target substrate, either translocating or remodelling it []. They are found in all living organisms and share the common feature of the presence of a highly conserved AAA domain called the AAA module. This domain is responsible for ATP binding and hydrolysis. It contains 200-250 residues, among them there are two classical motifs, Walker A (GX4GKT) and Walker B (HyDE) []. The functional variety seen between AAA ATPases is in part due to their extensive number of accessory domains and factors, and to their variable organisation within oligomeric assemblies, in addition to changes in key functional residues within the ATPase domain itself. More information about these proteins can be found at Protein of the Month: AAA ATPases [].; GO: 0005524 ATP binding; PDB: 3H4M_A 1NSF_A 1D2N_A 1HQY_E 1DO0_E 1DO2_C 1G4B_E 1HT1_F 1G4A_F 1HT2_G ....
Probab=95.95 E-value=0.0092 Score=52.91 Aligned_cols=22 Identities=27% Similarity=0.380 Sum_probs=18.4
Q ss_pred EEEEcCCCCcHHHHHHHHHHhc
Q 006122 68 TIIVGETGSGKTTQIPQYLKEA 89 (660)
Q Consensus 68 vii~apTGsGKT~~ip~~l~~~ 89 (660)
+++.||+|+|||+++-.+....
T Consensus 1 ill~G~~G~GKT~l~~~la~~l 22 (132)
T PF00004_consen 1 ILLHGPPGTGKTTLARALAQYL 22 (132)
T ss_dssp EEEESSTTSSHHHHHHHHHHHT
T ss_pred CEEECcCCCCeeHHHHHHHhhc
Confidence 5899999999998887766654
No 278
>KOG2228 consensus Origin recognition complex, subunit 4 [Replication, recombination and repair]
Probab=95.93 E-value=0.17 Score=51.28 Aligned_cols=130 Identities=21% Similarity=0.290 Sum_probs=73.6
Q ss_pred cCCEEEEEcCCCCcHHHHHHHHHHhccccCCCeEEEE-----eCchHHHHHHHHHHHHHHhCCeeeeEEeeeeeccccCC
Q 006122 64 THATTIIVGETGSGKTTQIPQYLKEAGWADGGRVIAC-----TQPRRLAVQAVASRVAEEMGVKVGEEVGYTIRFEDFTN 138 (660)
Q Consensus 64 ~~~~vii~apTGsGKT~~ip~~l~~~~~~~~~~~i~v-----~p~r~la~~~~~~~~~~~~~~~~~~~vg~~~~~~~~~~ 138 (660)
+.+.+++.||-|||||+++--.+.+ ...-+...++| .++-++|....+..++.++... +...|. . .
T Consensus 48 EsnsviiigprgsgkT~li~~~Ls~-~q~~~E~~l~v~Lng~~~~dk~al~~I~rql~~e~~~~-~k~~gs------f-t 118 (408)
T KOG2228|consen 48 ESNSVIIIGPRGSGKTILIDTRLSD-IQENGENFLLVRLNGELQTDKIALKGITRQLALELNRI-VKSFGS------F-T 118 (408)
T ss_pred CCCceEEEccCCCCceEeeHHHHhh-HHhcCCeEEEEEECccchhhHHHHHHHHHHHHHHHhhh-heeecc------c-c
Confidence 4577999999999999887766655 12222333333 3444556666666666665432 111110 0 0
Q ss_pred CCCceEEEechHHHHHHHhcCCCCCCC-cEEEEeCCCcCC--cChhHHHHHHHHHHHhcCCceEEEeecccchHH
Q 006122 139 KDLTAIKFLTDGVLLREMMDDPLLTKY-SVIMVDEAHERS--ISTDILLGLLKKIQRCRSDLRLIISSATIEAKS 210 (660)
Q Consensus 139 ~~~~~I~v~T~~~ll~~l~~~~~l~~~-~~iIiDE~Her~--~~~d~ll~~l~~~~~~~~~~kii~~SAT~~~~~ 210 (660)
+ +-..|+..+..+..-... -++|+||++-.. ...-++..++......+.++-+|++|--+|.-+
T Consensus 119 e--------~l~~lL~~L~~~~~~t~~~ViFIldEfDlf~~h~rQtllYnlfDisqs~r~Piciig~Ttrld~lE 185 (408)
T KOG2228|consen 119 E--------NLSKLLEALKKGDETTSGKVIFILDEFDLFAPHSRQTLLYNLFDISQSARAPICIIGVTTRLDILE 185 (408)
T ss_pred h--------hHHHHHHHHhcCCCCCCceEEEEeehhhccccchhhHHHHHHHHHHhhcCCCeEEEEeeccccHHH
Confidence 0 113455555554444444 456778887322 222345555666666677788889988887643
No 279
>PRK14962 DNA polymerase III subunits gamma and tau; Provisional
Probab=95.91 E-value=0.036 Score=60.52 Aligned_cols=32 Identities=28% Similarity=0.398 Sum_probs=22.7
Q ss_pred HHHHHhcCC---EEEEEcCCCCcHHHHHHHHHHhc
Q 006122 58 ILYLVETHA---TTIIVGETGSGKTTQIPQYLKEA 89 (660)
Q Consensus 58 i~~~l~~~~---~vii~apTGsGKT~~ip~~l~~~ 89 (660)
+..++..++ .+++.||+|+||||++-.+....
T Consensus 26 L~~~i~~~~l~~~~Lf~GPpGtGKTTlA~~lA~~l 60 (472)
T PRK14962 26 IINALKKNSISHAYIFAGPRGTGKTTVARILAKSL 60 (472)
T ss_pred HHHHHHcCCCCeEEEEECCCCCCHHHHHHHHHHHh
Confidence 344455553 37999999999998887665543
No 280
>PRK14086 dnaA chromosomal replication initiation protein; Provisional
Probab=95.90 E-value=0.13 Score=57.38 Aligned_cols=36 Identities=31% Similarity=0.295 Sum_probs=23.6
Q ss_pred CEEEEEcCCCCcHHHHHHHHHHhcccc-CCCeEEEEe
Q 006122 66 ATTIIVGETGSGKTTQIPQYLKEAGWA-DGGRVIACT 101 (660)
Q Consensus 66 ~~vii~apTGsGKT~~ip~~l~~~~~~-~~~~~i~v~ 101 (660)
+.++|.|++|+|||.++-.+..+.... .+.+++++.
T Consensus 315 NpL~LyG~sGsGKTHLL~AIa~~a~~~~~g~~V~Yit 351 (617)
T PRK14086 315 NPLFIYGESGLGKTHLLHAIGHYARRLYPGTRVRYVS 351 (617)
T ss_pred CcEEEECCCCCCHHHHHHHHHHHHHHhCCCCeEEEee
Confidence 448999999999998776665554321 234445443
No 281
>PF05127 Helicase_RecD: Helicase; InterPro: IPR007807 This domain is about 350 amino acid residues long and appears to have a P-loop motif, suggesting this is an ATPase. This domain is often N-terminal to a GCN5-related N-acetyltransferase domain IPR000182 from INTERPRO and C-terminal to IPR013562 from INTERPRO.; PDB: 2ZPA_B.
Probab=95.90 E-value=0.0043 Score=57.81 Aligned_cols=117 Identities=25% Similarity=0.296 Sum_probs=51.4
Q ss_pred EEEcCCCCcHHHHHHHHHHhccccCCCeEEEEeCchHHHHHHHHHHHHHHhCCeeeeEEeeeeec------cccCCCCCc
Q 006122 69 IIVGETGSGKTTQIPQYLKEAGWADGGRVIACTQPRRLAVQAVASRVAEEMGVKVGEEVGYTIRF------EDFTNKDLT 142 (660)
Q Consensus 69 ii~apTGsGKT~~ip~~l~~~~~~~~~~~i~v~p~r~la~~~~~~~~~~~~~~~~~~~vg~~~~~------~~~~~~~~~ 142 (660)
||+|+-|-|||+.+-..+..... .+...|+|+-|..-+++.+.+.....+. ..||.... .........
T Consensus 1 VltA~RGRGKSa~lGl~~a~l~~-~~~~~I~vtAP~~~~~~~lf~~~~~~l~-----~~~~~~~~~~~~~~~~~~~~~~~ 74 (177)
T PF05127_consen 1 VLTADRGRGKSAALGLAAAALIQ-KGKIRILVTAPSPENVQTLFEFAEKGLK-----ALGYKEEKKKRIGQIIKLRFNKQ 74 (177)
T ss_dssp -EEE-TTSSHHHHHHHCCCCSSS------EEEE-SS--S-HHHHHCC-------------------------------CC
T ss_pred CccCCCCCCHHHHHHHHHHHHHH-hcCceEEEecCCHHHHHHHHHHHHhhcc-----ccccccccccccccccccccccc
Confidence 68999999999888766544422 2223466666666666655554332221 11111100 001111257
Q ss_pred eEEEechHHHHHHHhcCCCCCCCcEEEEeCCCcCCcChhHHHHHHHHHHHhcCCceEEEeeccc
Q 006122 143 AIKFLTDGVLLREMMDDPLLTKYSVIMVDEAHERSISTDILLGLLKKIQRCRSDLRLIISSATI 206 (660)
Q Consensus 143 ~I~v~T~~~ll~~l~~~~~l~~~~~iIiDE~Her~~~~d~ll~~l~~~~~~~~~~kii~~SAT~ 206 (660)
.|.|..|+.+... -...+++|||||= .+. ..+++.+... ...+++|.|+
T Consensus 75 ~i~f~~Pd~l~~~------~~~~DlliVDEAA--aIp----~p~L~~ll~~---~~~vv~stTi 123 (177)
T PF05127_consen 75 RIEFVAPDELLAE------KPQADLLIVDEAA--AIP----LPLLKQLLRR---FPRVVFSTTI 123 (177)
T ss_dssp C--B--HHHHCCT----------SCEEECTGG--GS-----HHHHHHHHCC---SSEEEEEEEB
T ss_pred eEEEECCHHHHhC------cCCCCEEEEechh--cCC----HHHHHHHHhh---CCEEEEEeec
Confidence 7889999887543 2245899999997 333 3344444433 3356778887
No 282
>PRK14959 DNA polymerase III subunits gamma and tau; Provisional
Probab=95.89 E-value=0.053 Score=60.60 Aligned_cols=34 Identities=21% Similarity=0.289 Sum_probs=23.6
Q ss_pred HHHHHHHhcC---CEEEEEcCCCCcHHHHHHHHHHhc
Q 006122 56 TAILYLVETH---ATTIIVGETGSGKTTQIPQYLKEA 89 (660)
Q Consensus 56 ~~i~~~l~~~---~~vii~apTGsGKT~~ip~~l~~~ 89 (660)
+.+..++.++ +.++++||.|+|||+++-.+....
T Consensus 26 ~~L~~ai~~~ri~ha~Lf~GPpG~GKTtiArilAk~L 62 (624)
T PRK14959 26 AILSRAAQENRVAPAYLFSGTRGVGKTTIARIFAKAL 62 (624)
T ss_pred HHHHHHHHcCCCCceEEEECCCCCCHHHHHHHHHHhc
Confidence 3344455554 358899999999998876665444
No 283
>PTZ00293 thymidine kinase; Provisional
Probab=95.87 E-value=0.046 Score=52.48 Aligned_cols=39 Identities=21% Similarity=0.337 Sum_probs=27.4
Q ss_pred cCCEEEEEcCCCCcHHHHHHHHHHhccccCCCeEEEEeCc
Q 006122 64 THATTIIVGETGSGKTTQIPQYLKEAGWADGGRVIACTQP 103 (660)
Q Consensus 64 ~~~~vii~apTGsGKT~~ip~~l~~~~~~~~~~~i~v~p~ 103 (660)
.|...++.||.+||||+.+-+.+..... .+.+++++.|.
T Consensus 3 ~G~i~vi~GpMfSGKTteLLr~i~~y~~-ag~kv~~~kp~ 41 (211)
T PTZ00293 3 RGTISVIIGPMFSGKTTELMRLVKRFTY-SEKKCVVIKYS 41 (211)
T ss_pred ceEEEEEECCCCChHHHHHHHHHHHHHH-cCCceEEEEec
Confidence 4667899999999999866666655433 34556666664
No 284
>PRK07764 DNA polymerase III subunits gamma and tau; Validated
Probab=95.86 E-value=0.048 Score=63.51 Aligned_cols=45 Identities=24% Similarity=0.480 Sum_probs=31.1
Q ss_pred hcCCCCCCCcEEEEeCCCcCCcChhHHHHHHHHHHHhcCCceEEEee
Q 006122 157 MDDPLLTKYSVIMVDEAHERSISTDILLGLLKKIQRCRSDLRLIISS 203 (660)
Q Consensus 157 ~~~~~l~~~~~iIiDE~Her~~~~d~ll~~l~~~~~~~~~~kii~~S 203 (660)
...+...++.++||||+|. +..+....++|.+........+|+.+
T Consensus 113 ~~~p~~~~~KV~IIDEad~--lt~~a~NaLLK~LEEpP~~~~fIl~t 157 (824)
T PRK07764 113 FFAPAESRYKIFIIDEAHM--VTPQGFNALLKIVEEPPEHLKFIFAT 157 (824)
T ss_pred HhchhcCCceEEEEechhh--cCHHHHHHHHHHHhCCCCCeEEEEEe
Confidence 3345567899999999994 44566667777776655666666654
No 285
>PF00308 Bac_DnaA: Bacterial dnaA protein; InterPro: IPR013317 This entry represents the central domain of bacterial DnaA proteins [, , ] that play an important role in initiating and regulating chromosomal replication. DnaA is an ATP- and DNA-binding protein. It binds specifically to 9 bp nucleotide repeats known as dnaA boxes which are found in the chromosome origin of replication (oriC). DnaA is a protein of about 50 kDa that contains two conserved regions: the first is located in the N-terminal half and corresponds to the ATP-binding domain, the second is located in the C-terminal half and could be involved in DNA-binding. The protein may also bind the RNA polymerase beta subunit, the dnaB and dnaZ proteins, and the groE gene products (chaperonins) [].; PDB: 2KJQ_A 2Z4S_A 2Z4R_C 2HCB_B 3R8F_C 1L8Q_A 3SC3_B 3BOS_A.
Probab=95.85 E-value=0.034 Score=54.41 Aligned_cols=36 Identities=28% Similarity=0.367 Sum_probs=22.1
Q ss_pred CEEEEEcCCCCcHHHHHHHHHHhccc-cCCCeEEEEe
Q 006122 66 ATTIIVGETGSGKTTQIPQYLKEAGW-ADGGRVIACT 101 (660)
Q Consensus 66 ~~vii~apTGsGKT~~ip~~l~~~~~-~~~~~~i~v~ 101 (660)
+.++|.||+|+|||.++-.+..+... .++.+++++.
T Consensus 35 ~~l~l~G~~G~GKTHLL~Ai~~~~~~~~~~~~v~y~~ 71 (219)
T PF00308_consen 35 NPLFLYGPSGLGKTHLLQAIANEAQKQHPGKRVVYLS 71 (219)
T ss_dssp SEEEEEESTTSSHHHHHHHHHHHHHHHCTTS-EEEEE
T ss_pred CceEEECCCCCCHHHHHHHHHHHHHhccccccceeec
Confidence 45899999999999776555443321 1334445443
No 286
>PRK05896 DNA polymerase III subunits gamma and tau; Validated
Probab=95.85 E-value=0.06 Score=59.85 Aligned_cols=51 Identities=27% Similarity=0.397 Sum_probs=30.6
Q ss_pred HHHHHHhcCCCCCCCcEEEEeCCCcCCcChhHHHHHHHHHHHhcCCceEEEee
Q 006122 151 VLLREMMDDPLLTKYSVIMVDEAHERSISTDILLGLLKKIQRCRSDLRLIISS 203 (660)
Q Consensus 151 ~ll~~l~~~~~l~~~~~iIiDE~Her~~~~d~ll~~l~~~~~~~~~~kii~~S 203 (660)
.+...+...|...+..++||||+|. +..+....+++.+-...+...+|+++
T Consensus 106 eIi~~~~~~P~~~~~KVIIIDEad~--Lt~~A~NaLLKtLEEPp~~tvfIL~T 156 (605)
T PRK05896 106 NIIDNINYLPTTFKYKVYIIDEAHM--LSTSAWNALLKTLEEPPKHVVFIFAT 156 (605)
T ss_pred HHHHHHHhchhhCCcEEEEEechHh--CCHHHHHHHHHHHHhCCCcEEEEEEC
Confidence 3444445556667789999999993 33444555666555444444444444
No 287
>TIGR02782 TrbB_P P-type conjugative transfer ATPase TrbB. The TrbB protein is found in the trb locus of Agrobacterium Ti plasmids where it is involved in the type IV secretion system for plasmid conjugative transfer. TrbB is a homolog of the vir system VirB11 ATPase, and the Flp pilus sytem ATPase TadA.
Probab=95.85 E-value=0.022 Score=58.46 Aligned_cols=53 Identities=32% Similarity=0.376 Sum_probs=35.1
Q ss_pred HHHHHHHHHhcCCEEEEEcCCCCcHHHHHHHHHHhcccc-CCCeEEEEeCchHH
Q 006122 54 YRTAILYLVETHATTIIVGETGSGKTTQIPQYLKEAGWA-DGGRVIACTQPRRL 106 (660)
Q Consensus 54 ~~~~i~~~l~~~~~vii~apTGsGKT~~ip~~l~~~~~~-~~~~~i~v~p~r~l 106 (660)
..+.+..++..+.+++|+|+|||||||++-.++...... +..+++.+-.+.++
T Consensus 121 ~~~~L~~~v~~~~~ilI~G~tGSGKTTll~al~~~i~~~~~~~ri~tiEd~~El 174 (299)
T TIGR02782 121 QRDVLREAVLARKNILVVGGTGSGKTTLANALLAEIAKNDPTDRVVIIEDTREL 174 (299)
T ss_pred HHHHHHHHHHcCCeEEEECCCCCCHHHHHHHHHHHhhccCCCceEEEECCchhh
Confidence 334456667788899999999999999987666543221 23445555444444
No 288
>PRK14965 DNA polymerase III subunits gamma and tau; Provisional
Probab=95.85 E-value=0.06 Score=60.63 Aligned_cols=50 Identities=24% Similarity=0.464 Sum_probs=32.4
Q ss_pred HHHHHhcCCCCCCCcEEEEeCCCcCCcChhHHHHHHHHHHHhcCCceEEEee
Q 006122 152 LLREMMDDPLLTKYSVIMVDEAHERSISTDILLGLLKKIQRCRSDLRLIISS 203 (660)
Q Consensus 152 ll~~l~~~~~l~~~~~iIiDE~Her~~~~d~ll~~l~~~~~~~~~~kii~~S 203 (660)
+...+...+...++.++||||+|. +..+....+++.+..-.+...+|+.+
T Consensus 107 l~~~~~~~p~~~~~KVvIIdev~~--Lt~~a~naLLk~LEepp~~~~fIl~t 156 (576)
T PRK14965 107 LRENVKYLPSRSRYKIFIIDEVHM--LSTNAFNALLKTLEEPPPHVKFIFAT 156 (576)
T ss_pred HHHHHHhccccCCceEEEEEChhh--CCHHHHHHHHHHHHcCCCCeEEEEEe
Confidence 444444556678899999999994 44455666676666554555555544
No 289
>PRK14955 DNA polymerase III subunits gamma and tau; Provisional
Probab=95.84 E-value=0.054 Score=58.18 Aligned_cols=33 Identities=27% Similarity=0.283 Sum_probs=23.2
Q ss_pred HHHHHHhcCC---EEEEEcCCCCcHHHHHHHHHHhc
Q 006122 57 AILYLVETHA---TTIIVGETGSGKTTQIPQYLKEA 89 (660)
Q Consensus 57 ~i~~~l~~~~---~vii~apTGsGKT~~ip~~l~~~ 89 (660)
.+..++.+++ .++++||.|+|||+.+-.+....
T Consensus 27 ~L~~~~~~~~~~ha~lf~Gp~G~GKtt~A~~~a~~l 62 (397)
T PRK14955 27 TIQNSLRMGRVGHGYIFSGLRGVGKTTAARVFAKAV 62 (397)
T ss_pred HHHHHHHhCCcceeEEEECCCCCCHHHHHHHHHHHh
Confidence 3445555553 48899999999998876665443
No 290
>cd03214 ABC_Iron-Siderophores_B12_Hemin ABC transporters, involved in the uptake of siderophores, heme, and vitamin B12, are widely conserved in bacteria and archaea. Only very few species lack representatives of the siderophore family transporters. The E. coli BtuCD protein is an ABC transporter mediating vitamin B12 uptake. The two ATP-binding cassettes (BtuD) are in close contact with each other, as are the two membrane-spanning subunits (BtuC); this arrangement is distinct from that observed for the E. coli lipid flippase MsbA. The BtuC subunits provide 20 transmembrane helices grouped around a translocation pathway that is closed to the cytoplasm by a gate region, whereas the dimer arrangement of the BtuD subunits resembles the ATP-bound form of the Rad50 DNA repair enzyme. A prominent cytoplasmic loop of BtuC forms the contact region with the ATP-binding cassette and represent a conserved motif among the ABC transporters.
Probab=95.84 E-value=0.021 Score=54.06 Aligned_cols=134 Identities=18% Similarity=0.284 Sum_probs=65.2
Q ss_pred HhcCCEEEEEcCCCCcHHHHHHHHHHhccccCCCeEEEEe--C-----chHHHH-HHHHHHHHHHhCCeeeeEEeeeeec
Q 006122 62 VETHATTIIVGETGSGKTTQIPQYLKEAGWADGGRVIACT--Q-----PRRLAV-QAVASRVAEEMGVKVGEEVGYTIRF 133 (660)
Q Consensus 62 l~~~~~vii~apTGsGKT~~ip~~l~~~~~~~~~~~i~v~--p-----~r~la~-~~~~~~~~~~~~~~~~~~vg~~~~~ 133 (660)
+..++.+.|.||.||||||++-.+.-... ...+. |.+- + +..... ..+...+.+.++..
T Consensus 22 i~~G~~~~l~G~nGsGKStLl~~i~G~~~-~~~G~-v~~~g~~~~~~~~~~~~~~i~~~~q~l~~~gl~----------- 88 (180)
T cd03214 22 IEAGEIVGILGPNGAGKSTLLKTLAGLLK-PSSGE-ILLDGKDLASLSPKELARKIAYVPQALELLGLA----------- 88 (180)
T ss_pred ECCCCEEEEECCCCCCHHHHHHHHhCCCC-CCCcE-EEECCEECCcCCHHHHHHHHhHHHHHHHHcCCH-----------
Confidence 35789999999999999998876654332 12333 2221 1 111110 01111112222221
Q ss_pred cccCCCCCceEEEechHHHHHHHhcCCCCCCCcEEEEeCCCcCCcChhHHHHHHHHHHHhcC--CceEEEeecccchHHH
Q 006122 134 EDFTNKDLTAIKFLTDGVLLREMMDDPLLTKYSVIMVDEAHERSISTDILLGLLKKIQRCRS--DLRLIISSATIEAKSM 211 (660)
Q Consensus 134 ~~~~~~~~~~I~v~T~~~ll~~l~~~~~l~~~~~iIiDE~Her~~~~d~ll~~l~~~~~~~~--~~kii~~SAT~~~~~~ 211 (660)
... ...+.-.+.|.-.+......++.+.+++++||-= .+++.+....+.+.+..... +..+|+.| -+.+.+
T Consensus 89 -~~~---~~~~~~LS~G~~qrl~laral~~~p~llllDEP~-~~LD~~~~~~~~~~l~~~~~~~~~tiii~s--h~~~~~ 161 (180)
T cd03214 89 -HLA---DRPFNELSGGERQRVLLARALAQEPPILLLDEPT-SHLDIAHQIELLELLRRLARERGKTVVMVL--HDLNLA 161 (180)
T ss_pred -hHh---cCCcccCCHHHHHHHHHHHHHhcCCCEEEEeCCc-cCCCHHHHHHHHHHHHHHHHhcCCEEEEEe--CCHHHH
Confidence 000 1112223455544443333345677999999987 56776655555555444322 33344433 344434
Q ss_pred HHHh
Q 006122 212 SAFF 215 (660)
Q Consensus 212 ~~~~ 215 (660)
.++.
T Consensus 162 ~~~~ 165 (180)
T cd03214 162 ARYA 165 (180)
T ss_pred HHhC
Confidence 3433
No 291
>PTZ00112 origin recognition complex 1 protein; Provisional
Probab=95.82 E-value=0.071 Score=60.91 Aligned_cols=20 Identities=30% Similarity=0.468 Sum_probs=15.2
Q ss_pred EEEEEcCCCCcHHHHHHHHH
Q 006122 67 TTIIVGETGSGKTTQIPQYL 86 (660)
Q Consensus 67 ~vii~apTGsGKT~~ip~~l 86 (660)
.+.|.|+||+|||..+-..+
T Consensus 783 vLYIyG~PGTGKTATVK~VL 802 (1164)
T PTZ00112 783 ILYISGMPGTGKTATVYSVI 802 (1164)
T ss_pred eEEEECCCCCCHHHHHHHHH
Confidence 45699999999996655443
No 292
>COG1702 PhoH Phosphate starvation-inducible protein PhoH, predicted ATPase [Signal transduction mechanisms]
Probab=95.81 E-value=0.013 Score=59.39 Aligned_cols=56 Identities=25% Similarity=0.194 Sum_probs=43.8
Q ss_pred CCCcHHHHHHHHHHHhcCCEEEEEcCCCCcHHHHHHHHHHhccccCCCeEEEEeCc
Q 006122 48 RLPVYKYRTAILYLVETHATTIIVGETGSGKTTQIPQYLKEAGWADGGRVIACTQP 103 (660)
Q Consensus 48 ~lPi~~~~~~i~~~l~~~~~vii~apTGsGKT~~ip~~l~~~~~~~~~~~i~v~p~ 103 (660)
-.|...-|..-++++.+++.++-.||-|+|||++.-....++.....-+.|+++-|
T Consensus 126 I~~kt~~Q~~y~eai~~~di~fGiGpAGTGKTyLava~av~al~~~~v~rIiLtRP 181 (348)
T COG1702 126 IIPKTPGQNMYPEAIEEHDIVFGIGPAGTGKTYLAVAKAVDALGAGQVRRIILTRP 181 (348)
T ss_pred eEecChhHHHHHHHHHhcCeeeeecccccCChhhhHHhHhhhhhhcccceeeecCc
Confidence 46888899999999999999999999999999766555444433333445888877
No 293
>PRK06067 flagellar accessory protein FlaH; Validated
Probab=95.79 E-value=0.046 Score=54.18 Aligned_cols=42 Identities=24% Similarity=0.363 Sum_probs=32.4
Q ss_pred HhcCCEEEEEcCCCCcHHHHHHHHHHhccccCCCeEEEEeCch
Q 006122 62 VETHATTIIVGETGSGKTTQIPQYLKEAGWADGGRVIACTQPR 104 (660)
Q Consensus 62 l~~~~~vii~apTGsGKT~~ip~~l~~~~~~~~~~~i~v~p~r 104 (660)
+..+..++|.|++|+|||++.-+++.+.. ..+.++++++-..
T Consensus 22 ~~~g~~~~i~G~~GsGKt~l~~~~~~~~~-~~g~~~~y~~~e~ 63 (234)
T PRK06067 22 IPFPSLILIEGDHGTGKSVLSQQFVYGAL-KQGKKVYVITTEN 63 (234)
T ss_pred CcCCcEEEEECCCCCChHHHHHHHHHHHH-hCCCEEEEEEcCC
Confidence 34578899999999999999888887653 3466777777643
No 294
>cd03223 ABCD_peroxisomal_ALDP Peroxisomal ATP-binding cassette transporter (Pat) is involved in the import of very long-chain fatty acids (VLCFA) into the peroxisome. The peroxisomal membrane forms a permeability barrier for a wide variety of metabolites required for and formed during fatty acid beta-oxidation. To communicate with the cytoplasm and mitochondria, peroxisomes need dedicated proteins to transport such hydrophilic molecules across their membranes. X-linked adrenoleukodystrophy (X-ALD) is caused by mutations in the ALD gene, which encodes ALDP (adrenoleukodystrophy protein ), a peroxisomal integral membrane protein that is a member of the ATP-binding cassette (ABC) transporter protein family. The disease is characterized by a striking and unpredictable variation in phenotypic expression. Phenotypes include the rapidly progressive childhood cerebral form (CCALD), the milder adult form, adrenomyeloneuropathy (AMN), and variants without neurologic involvement (i.e. asympt
Probab=95.78 E-value=0.038 Score=51.52 Aligned_cols=27 Identities=19% Similarity=0.368 Sum_probs=22.7
Q ss_pred HhcCCEEEEEcCCCCcHHHHHHHHHHh
Q 006122 62 VETHATTIIVGETGSGKTTQIPQYLKE 88 (660)
Q Consensus 62 l~~~~~vii~apTGsGKT~~ip~~l~~ 88 (660)
+..++.+.|.||.||||||++-.+.-.
T Consensus 24 i~~Ge~~~i~G~nGsGKSTLl~~l~G~ 50 (166)
T cd03223 24 IKPGDRLLITGPSGTGKSSLFRALAGL 50 (166)
T ss_pred ECCCCEEEEECCCCCCHHHHHHHHhcC
Confidence 467899999999999999988766544
No 295
>PRK14969 DNA polymerase III subunits gamma and tau; Provisional
Probab=95.76 E-value=0.066 Score=59.52 Aligned_cols=50 Identities=22% Similarity=0.449 Sum_probs=32.4
Q ss_pred HHHHHhcCCCCCCCcEEEEeCCCcCCcChhHHHHHHHHHHHhcCCceEEEee
Q 006122 152 LLREMMDDPLLTKYSVIMVDEAHERSISTDILLGLLKKIQRCRSDLRLIISS 203 (660)
Q Consensus 152 ll~~l~~~~~l~~~~~iIiDE~Her~~~~d~ll~~l~~~~~~~~~~kii~~S 203 (660)
++......+...++.++||||+|. +..+....+++.+....+...+|+.+
T Consensus 107 l~~~~~~~p~~~~~kVvIIDEad~--ls~~a~naLLK~LEepp~~~~fIL~t 156 (527)
T PRK14969 107 LLDNAQYAPTRGRFKVYIIDEVHM--LSKSAFNAMLKTLEEPPEHVKFILAT 156 (527)
T ss_pred HHHHHhhCcccCCceEEEEcCccc--CCHHHHHHHHHHHhCCCCCEEEEEEe
Confidence 334444456677889999999994 33445566777766555556666644
No 296
>cd03238 ABC_UvrA The excision repair protein UvrA; Nucleotide excision repair in eubacteria is a process that repairs DNA damage by the removal of a 12-13-mer oligonucleotide containing the lesion. Recognition and cleavage of the damaged DNA is a multistep ATP-dependent reaction that requires the UvrA, UvrB, and UvrC proteins. Both UvrA and UvrB are ATPases, with UvrA having two ATP binding sites, which have the characteristic signature of the family of ABC proteins, and UvrB having one ATP binding site that is structurally related to that of helicases.
Probab=95.76 E-value=0.077 Score=49.88 Aligned_cols=25 Identities=28% Similarity=0.515 Sum_probs=21.2
Q ss_pred HhcCCEEEEEcCCCCcHHHHHHHHH
Q 006122 62 VETHATTIIVGETGSGKTTQIPQYL 86 (660)
Q Consensus 62 l~~~~~vii~apTGsGKT~~ip~~l 86 (660)
+..+..+.|.||.||||||++-.++
T Consensus 18 i~~G~~~~l~G~nG~GKSTLl~~il 42 (176)
T cd03238 18 IPLNVLVVVTGVSGSGKSTLVNEGL 42 (176)
T ss_pred EcCCCEEEEECCCCCCHHHHHHHHh
Confidence 4578899999999999999987554
No 297
>COG2256 MGS1 ATPase related to the helicase subunit of the Holliday junction resolvase [DNA replication, recombination, and repair]
Probab=95.76 E-value=0.051 Score=56.32 Aligned_cols=30 Identities=30% Similarity=0.295 Sum_probs=22.5
Q ss_pred HHHHhcCC--EEEEEcCCCCcHHHHHHHHHHh
Q 006122 59 LYLVETHA--TTIIVGETGSGKTTQIPQYLKE 88 (660)
Q Consensus 59 ~~~l~~~~--~vii~apTGsGKT~~ip~~l~~ 88 (660)
-.++++++ +.|+.||+|+||||+.-.+...
T Consensus 40 rr~v~~~~l~SmIl~GPPG~GKTTlA~liA~~ 71 (436)
T COG2256 40 RRAVEAGHLHSMILWGPPGTGKTTLARLIAGT 71 (436)
T ss_pred HHHHhcCCCceeEEECCCCCCHHHHHHHHHHh
Confidence 35566554 6899999999999887765543
No 298
>TIGR00376 DNA helicase, putative. The gene product may represent a DNA helicase. Eukaryotic members of this family have been characterized as binding certain single-stranded G-rich DNA sequences (GGGGT and GGGCT). A number of related proteins are characterized as helicases.
Probab=95.75 E-value=0.025 Score=64.35 Aligned_cols=66 Identities=20% Similarity=0.315 Sum_probs=45.0
Q ss_pred CcHHHHHHHHHHHhcC-CEEEEEcCCCCcHHHHHHHHHHhccccCCCeEEEEeCchHHHHHHHHHHHHH
Q 006122 50 PVYKYRTAILYLVETH-ATTIIVGETGSGKTTQIPQYLKEAGWADGGRVIACTQPRRLAVQAVASRVAE 117 (660)
Q Consensus 50 Pi~~~~~~i~~~l~~~-~~vii~apTGsGKT~~ip~~l~~~~~~~~~~~i~v~p~r~la~~~~~~~~~~ 117 (660)
.+...|.+++.....+ +.++|.||+|+|||+.+..++.... ..+.++++++|+ ..|+..+.+++..
T Consensus 157 ~ln~~Q~~Av~~~l~~~~~~lI~GpPGTGKT~t~~~ii~~~~-~~g~~VLv~a~s-n~Avd~l~e~l~~ 223 (637)
T TIGR00376 157 NLNESQKEAVSFALSSKDLFLIHGPPGTGKTRTLVELIRQLV-KRGLRVLVTAPS-NIAVDNLLERLAL 223 (637)
T ss_pred CCCHHHHHHHHHHhcCCCeEEEEcCCCCCHHHHHHHHHHHHH-HcCCCEEEEcCc-HHHHHHHHHHHHh
Confidence 3566676666665554 8899999999999977766655442 234466666655 5666677777665
No 299
>PRK13833 conjugal transfer protein TrbB; Provisional
Probab=95.73 E-value=0.024 Score=58.47 Aligned_cols=33 Identities=33% Similarity=0.469 Sum_probs=26.3
Q ss_pred HHHHHHHhcCCEEEEEcCCCCcHHHHHHHHHHh
Q 006122 56 TAILYLVETHATTIIVGETGSGKTTQIPQYLKE 88 (660)
Q Consensus 56 ~~i~~~l~~~~~vii~apTGsGKT~~ip~~l~~ 88 (660)
+.+..++..+.+++|+|+|||||||++-.++..
T Consensus 135 ~~L~~~v~~~~nilI~G~tGSGKTTll~aL~~~ 167 (323)
T PRK13833 135 SVIRSAIDSRLNIVISGGTGSGKTTLANAVIAE 167 (323)
T ss_pred HHHHHHHHcCCeEEEECCCCCCHHHHHHHHHHH
Confidence 445566778889999999999999988665544
No 300
>cd03230 ABC_DR_subfamily_A This family of ATP-binding proteins belongs to a multisubunit transporter involved in drug resistance (BcrA and DrrA), nodulation, lipid transport, and lantibiotic immunity. In bacteria and archaea, these transporters usually include an ATP-binding protein and one or two integral membrane proteins. Eukaryote systems of the ABCA subfamily display ABC domains that are quite similar to this family. The ATP-binding domain shows the highest similarity between all members of the ABC transporter family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=95.70 E-value=0.056 Score=50.74 Aligned_cols=136 Identities=18% Similarity=0.276 Sum_probs=66.6
Q ss_pred HhcCCEEEEEcCCCCcHHHHHHHHHHhccccCCCeEEEEeCchHHHHHHHHHHHHHHhCCeeeeEEeeeeeccccCCC-C
Q 006122 62 VETHATTIIVGETGSGKTTQIPQYLKEAGWADGGRVIACTQPRRLAVQAVASRVAEEMGVKVGEEVGYTIRFEDFTNK-D 140 (660)
Q Consensus 62 l~~~~~vii~apTGsGKT~~ip~~l~~~~~~~~~~~i~v~p~r~la~~~~~~~~~~~~~~~~~~~vg~~~~~~~~~~~-~ 140 (660)
+..++.+.|.||.||||||++-.+.-.... ..+. |.+- -+.+.... . ... ..+||.......... .
T Consensus 23 i~~Ge~~~i~G~nGsGKStLl~~l~G~~~~-~~G~-i~~~-g~~~~~~~--~----~~~----~~i~~~~q~~~~~~~~t 89 (173)
T cd03230 23 VEKGEIYGLLGPNGAGKTTLIKIILGLLKP-DSGE-IKVL-GKDIKKEP--E----EVK----RRIGYLPEEPSLYENLT 89 (173)
T ss_pred EcCCcEEEEECCCCCCHHHHHHHHhCCCCC-CCeE-EEEC-CEEcccch--H----hhh----ccEEEEecCCccccCCc
Confidence 357889999999999999988765443221 2232 2221 11111000 0 111 113332211110000 0
Q ss_pred -CceEEEechHHHHHHHhcCCCCCCCcEEEEeCCCcCCcChhHHHHHHHHHHHhcC-CceEEEeecccchHHHHHH
Q 006122 141 -LTAIKFLTDGVLLREMMDDPLLTKYSVIMVDEAHERSISTDILLGLLKKIQRCRS-DLRLIISSATIEAKSMSAF 214 (660)
Q Consensus 141 -~~~I~v~T~~~ll~~l~~~~~l~~~~~iIiDE~Her~~~~d~ll~~l~~~~~~~~-~~kii~~SAT~~~~~~~~~ 214 (660)
...+. .+.|...+......+..+-+++++||-- .+++......+.+.+..... ...+|+. |-+.+.+.++
T Consensus 90 v~~~~~-LS~G~~qrv~laral~~~p~illlDEPt-~~LD~~~~~~l~~~l~~~~~~g~tiii~--th~~~~~~~~ 161 (173)
T cd03230 90 VRENLK-LSGGMKQRLALAQALLHDPELLILDEPT-SGLDPESRREFWELLRELKKEGKTILLS--SHILEEAERL 161 (173)
T ss_pred HHHHhh-cCHHHHHHHHHHHHHHcCCCEEEEeCCc-cCCCHHHHHHHHHHHHHHHHCCCEEEEE--CCCHHHHHHh
Confidence 01111 4555544444444445677999999988 57777666666655554432 2333333 3444444444
No 301
>TIGR00604 rad3 DNA repair helicase (rad3). All proteins in this family for which funcitons are known are DNA-DNA helicases that funciton in the initiation of transcription and nucleotide excision repair as part of the TFIIH complex. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=95.70 E-value=0.02 Score=66.35 Aligned_cols=59 Identities=14% Similarity=0.149 Sum_probs=38.4
Q ss_pred cHHHHHH----HHHHHhcCCEEEEEcCCCCcHH--HHHHHHHHhccccCCCeEEEEeCchHHHHH
Q 006122 51 VYKYRTA----ILYLVETHATTIIVGETGSGKT--TQIPQYLKEAGWADGGRVIACTQPRRLAVQ 109 (660)
Q Consensus 51 i~~~~~~----i~~~l~~~~~vii~apTGsGKT--~~ip~~l~~~~~~~~~~~i~v~p~r~la~~ 109 (660)
+|+.|.+ +.+++..+++.++.+|||+||| .+.|.+.+........++++++.+..-..|
T Consensus 11 ~y~~Q~~~m~~v~~~l~~~~~~llEsPTGtGKTlslL~~aL~~~~~~~~~~kIiy~sRThsQl~q 75 (705)
T TIGR00604 11 IYPEQRSYMRDLKRSLDRGDEAILEMPSGTGKTISLLSLILAYQQEKPEVRKIIYASRTHSQLEQ 75 (705)
T ss_pred CCHHHHHHHHHHHHHhccCCceEEeCCCCCCccHHHHHHHHHHHHhccccccEEEEcccchHHHH
Confidence 4666654 4566788999999999999999 333333222211123578888888766555
No 302
>PRK14951 DNA polymerase III subunits gamma and tau; Provisional
Probab=95.69 E-value=0.057 Score=60.68 Aligned_cols=50 Identities=22% Similarity=0.511 Sum_probs=31.7
Q ss_pred HHHHHhcCCCCCCCcEEEEeCCCcCCcChhHHHHHHHHHHHhcCCceEEEee
Q 006122 152 LLREMMDDPLLTKYSVIMVDEAHERSISTDILLGLLKKIQRCRSDLRLIISS 203 (660)
Q Consensus 152 ll~~l~~~~~l~~~~~iIiDE~Her~~~~d~ll~~l~~~~~~~~~~kii~~S 203 (660)
++......+...++.++||||+|. +..+....+++.+..-.....+|+.+
T Consensus 112 li~~~~~~p~~g~~KV~IIDEvh~--Ls~~a~NaLLKtLEEPP~~~~fIL~T 161 (618)
T PRK14951 112 LLEQAVYKPVQGRFKVFMIDEVHM--LTNTAFNAMLKTLEEPPEYLKFVLAT 161 (618)
T ss_pred HHHHHHhCcccCCceEEEEEChhh--CCHHHHHHHHHhcccCCCCeEEEEEE
Confidence 344444455667899999999993 45555666666665544455555543
No 303
>PRK14963 DNA polymerase III subunits gamma and tau; Provisional
Probab=95.67 E-value=0.057 Score=59.52 Aligned_cols=46 Identities=26% Similarity=0.397 Sum_probs=28.2
Q ss_pred HHhcCCCCCCCcEEEEeCCCcCCcChhHHHHHHHHHHHhcCCceEEEe
Q 006122 155 EMMDDPLLTKYSVIMVDEAHERSISTDILLGLLKKIQRCRSDLRLIIS 202 (660)
Q Consensus 155 ~l~~~~~l~~~~~iIiDE~Her~~~~d~ll~~l~~~~~~~~~~kii~~ 202 (660)
.+...+......+|||||+|. +..+.+..+++.+....+...+|+.
T Consensus 107 ~~~~~p~~~~~kVVIIDEad~--ls~~a~naLLk~LEep~~~t~~Il~ 152 (504)
T PRK14963 107 KVLLAPLRGGRKVYILDEAHM--MSKSAFNALLKTLEEPPEHVIFILA 152 (504)
T ss_pred HHhhccccCCCeEEEEECccc--cCHHHHHHHHHHHHhCCCCEEEEEE
Confidence 334445677889999999993 3444556666665544344444443
No 304
>PHA02544 44 clamp loader, small subunit; Provisional
Probab=95.65 E-value=0.091 Score=54.62 Aligned_cols=33 Identities=21% Similarity=0.225 Sum_probs=21.7
Q ss_pred HHHHHHHhcCC---EEEEEcCCCCcHHHHHHHHHHh
Q 006122 56 TAILYLVETHA---TTIIVGETGSGKTTQIPQYLKE 88 (660)
Q Consensus 56 ~~i~~~l~~~~---~vii~apTGsGKT~~ip~~l~~ 88 (660)
+.+...+.+++ .+++.||+|+|||+++-.+...
T Consensus 31 ~~l~~~~~~~~~~~~lll~G~~G~GKT~la~~l~~~ 66 (316)
T PHA02544 31 ETFKSIVKKGRIPNMLLHSPSPGTGKTTVAKALCNE 66 (316)
T ss_pred HHHHHHHhcCCCCeEEEeeCcCCCCHHHHHHHHHHH
Confidence 34444444543 4555999999999887666544
No 305
>PRK14950 DNA polymerase III subunits gamma and tau; Provisional
Probab=95.61 E-value=0.065 Score=60.57 Aligned_cols=47 Identities=28% Similarity=0.468 Sum_probs=28.4
Q ss_pred HHHHhcCCCCCCCcEEEEeCCCcCCcChhHHHHHHHHHHHhcCCceEEE
Q 006122 153 LREMMDDPLLTKYSVIMVDEAHERSISTDILLGLLKKIQRCRSDLRLII 201 (660)
Q Consensus 153 l~~l~~~~~l~~~~~iIiDE~Her~~~~d~ll~~l~~~~~~~~~~kii~ 201 (660)
...+...+...+..+|||||+|. +..+.+..+++.+....+...+|+
T Consensus 109 i~~~~~~p~~~~~kVvIIDEa~~--L~~~a~naLLk~LEepp~~tv~Il 155 (585)
T PRK14950 109 IERVQFRPALARYKVYIIDEVHM--LSTAAFNALLKTLEEPPPHAIFIL 155 (585)
T ss_pred HHHHhhCcccCCeEEEEEeChHh--CCHHHHHHHHHHHhcCCCCeEEEE
Confidence 33444456678899999999994 344455556666544433433443
No 306
>PRK12422 chromosomal replication initiation protein; Provisional
Probab=95.60 E-value=0.054 Score=58.84 Aligned_cols=35 Identities=23% Similarity=0.445 Sum_probs=23.7
Q ss_pred CEEEEEcCCCCcHHHHHHHHHHhccccCCCeEEEEe
Q 006122 66 ATTIIVGETGSGKTTQIPQYLKEAGWADGGRVIACT 101 (660)
Q Consensus 66 ~~vii~apTGsGKT~~ip~~l~~~~~~~~~~~i~v~ 101 (660)
+.+++.||+|+|||+++-.+..... ..+.+++++.
T Consensus 142 npl~L~G~~G~GKTHLl~Ai~~~l~-~~~~~v~yi~ 176 (445)
T PRK12422 142 NPIYLFGPEGSGKTHLMQAAVHALR-ESGGKILYVR 176 (445)
T ss_pred ceEEEEcCCCCCHHHHHHHHHHHHH-HcCCCEEEee
Confidence 4589999999999977765554432 2345556554
No 307
>PRK09111 DNA polymerase III subunits gamma and tau; Validated
Probab=95.60 E-value=0.093 Score=59.00 Aligned_cols=50 Identities=24% Similarity=0.502 Sum_probs=33.9
Q ss_pred HHHHHhcCCCCCCCcEEEEeCCCcCCcChhHHHHHHHHHHHhcCCceEEEee
Q 006122 152 LLREMMDDPLLTKYSVIMVDEAHERSISTDILLGLLKKIQRCRSDLRLIISS 203 (660)
Q Consensus 152 ll~~l~~~~~l~~~~~iIiDE~Her~~~~d~ll~~l~~~~~~~~~~kii~~S 203 (660)
++..+...+....+.+|||||+|. +.......+++.+..-.+...+|+.+
T Consensus 120 Iie~~~~~P~~a~~KVvIIDEad~--Ls~~a~naLLKtLEePp~~~~fIl~t 169 (598)
T PRK09111 120 IIESVRYRPVSARYKVYIIDEVHM--LSTAAFNALLKTLEEPPPHVKFIFAT 169 (598)
T ss_pred HHHHHHhchhcCCcEEEEEEChHh--CCHHHHHHHHHHHHhCCCCeEEEEEe
Confidence 444445566678899999999994 34455666677766555666677654
No 308
>PRK14088 dnaA chromosomal replication initiation protein; Provisional
Probab=95.58 E-value=0.17 Score=55.14 Aligned_cols=36 Identities=25% Similarity=0.164 Sum_probs=23.2
Q ss_pred CEEEEEcCCCCcHHHHHHHHHHhcccc-CCCeEEEEe
Q 006122 66 ATTIIVGETGSGKTTQIPQYLKEAGWA-DGGRVIACT 101 (660)
Q Consensus 66 ~~vii~apTGsGKT~~ip~~l~~~~~~-~~~~~i~v~ 101 (660)
+.+++.||+|+|||.++-.+..+.... .+.++++++
T Consensus 131 n~l~lyG~~G~GKTHLl~ai~~~l~~~~~~~~v~yi~ 167 (440)
T PRK14088 131 NPLFIYGGVGLGKTHLLQSIGNYVVQNEPDLRVMYIT 167 (440)
T ss_pred CeEEEEcCCCCcHHHHHHHHHHHHHHhCCCCeEEEEE
Confidence 459999999999997776554433211 234455554
No 309
>PRK05707 DNA polymerase III subunit delta'; Validated
Probab=95.56 E-value=0.084 Score=54.94 Aligned_cols=52 Identities=19% Similarity=0.295 Sum_probs=34.7
Q ss_pred HHHHHHHhcCCCCCCCcEEEEeCCCcCCcChhHHHHHHHHHHHhcCCceEEEee
Q 006122 150 GVLLREMMDDPLLTKYSVIMVDEAHERSISTDILLGLLKKIQRCRSDLRLIISS 203 (660)
Q Consensus 150 ~~ll~~l~~~~~l~~~~~iIiDE~Her~~~~d~ll~~l~~~~~~~~~~kii~~S 203 (660)
..+...+...+......++||||+| .++.+....++|.+..-.++..+|+.|
T Consensus 92 R~l~~~~~~~~~~~~~kv~iI~~a~--~m~~~aaNaLLK~LEEPp~~~~fiL~t 143 (328)
T PRK05707 92 RELVSFVVQTAQLGGRKVVLIEPAE--AMNRNAANALLKSLEEPSGDTVLLLIS 143 (328)
T ss_pred HHHHHHHhhccccCCCeEEEECChh--hCCHHHHHHHHHHHhCCCCCeEEEEEE
Confidence 3455555556667889999999999 355567777888766544444444444
No 310
>PRK08451 DNA polymerase III subunits gamma and tau; Validated
Probab=95.54 E-value=0.1 Score=57.48 Aligned_cols=43 Identities=21% Similarity=0.564 Sum_probs=30.4
Q ss_pred CCCCCCCcEEEEeCCCcCCcChhHHHHHHHHHHHhcCCceEEEee
Q 006122 159 DPLLTKYSVIMVDEAHERSISTDILLGLLKKIQRCRSDLRLIISS 203 (660)
Q Consensus 159 ~~~l~~~~~iIiDE~Her~~~~d~ll~~l~~~~~~~~~~kii~~S 203 (660)
.|....+.++||||+|. +..+....+++.+....+..++|+.+
T Consensus 112 ~P~~~~~KVvIIDEad~--Lt~~A~NALLK~LEEpp~~t~FIL~t 154 (535)
T PRK08451 112 KPSMARFKIFIIDEVHM--LTKEAFNALLKTLEEPPSYVKFILAT 154 (535)
T ss_pred CcccCCeEEEEEECccc--CCHHHHHHHHHHHhhcCCceEEEEEE
Confidence 45567899999999994 44566667777776655566666654
No 311
>COG0541 Ffh Signal recognition particle GTPase [Intracellular trafficking and secretion]
Probab=95.53 E-value=0.15 Score=53.55 Aligned_cols=137 Identities=21% Similarity=0.254 Sum_probs=88.6
Q ss_pred CEEEEEcCCCCcHHHHHHHHHHhccccCCCeEEEEeCchHHHHHHHHHHHHHHhCCeeeeEEeeeeeccccCCCCCceEE
Q 006122 66 ATTIIVGETGSGKTTQIPQYLKEAGWADGGRVIACTQPRRLAVQAVASRVAEEMGVKVGEEVGYTIRFEDFTNKDLTAIK 145 (660)
Q Consensus 66 ~~vii~apTGsGKT~~ip~~l~~~~~~~~~~~i~v~p~r~la~~~~~~~~~~~~~~~~~~~vg~~~~~~~~~~~~~~~I~ 145 (660)
.+++++|=-||||||....+............++.+-+.|-+|....+.+++..+..+... + ...+
T Consensus 101 ~vImmvGLQGsGKTTt~~KLA~~lkk~~~kvllVaaD~~RpAA~eQL~~La~q~~v~~f~~-~------~~~~------- 166 (451)
T COG0541 101 TVILMVGLQGSGKTTTAGKLAKYLKKKGKKVLLVAADTYRPAAIEQLKQLAEQVGVPFFGS-G------TEKD------- 166 (451)
T ss_pred eEEEEEeccCCChHhHHHHHHHHHHHcCCceEEEecccCChHHHHHHHHHHHHcCCceecC-C------CCCC-------
Confidence 4577899999999988766655443323344578888999999988888888877654321 1 0111
Q ss_pred EechHHHHHHHhcCCCCCCCcEEEEeCCCcCCcChhHHHHHHHHHHHhcCCceEEEeeccc--chHHHHHHhhcCC
Q 006122 146 FLTDGVLLREMMDDPLLTKYSVIMVDEAHERSISTDILLGLLKKIQRCRSDLRLIISSATI--EAKSMSAFFHARK 219 (660)
Q Consensus 146 v~T~~~ll~~l~~~~~l~~~~~iIiDE~Her~~~~d~ll~~l~~~~~~~~~~kii~~SAT~--~~~~~~~~~~~~~ 219 (660)
|-.+.+.-........+++||||=|-...++.+++..+...-....|+=-++.+-|++ ++...++-|+...
T Consensus 167 ---Pv~Iak~al~~ak~~~~DvvIvDTAGRl~ide~Lm~El~~Ik~~~~P~E~llVvDam~GQdA~~~A~aF~e~l 239 (451)
T COG0541 167 ---PVEIAKAALEKAKEEGYDVVIVDTAGRLHIDEELMDELKEIKEVINPDETLLVVDAMIGQDAVNTAKAFNEAL 239 (451)
T ss_pred ---HHHHHHHHHHHHHHcCCCEEEEeCCCcccccHHHHHHHHHHHhhcCCCeEEEEEecccchHHHHHHHHHhhhc
Confidence 1112222112222456899999999944466666655555544567777777888888 6777777777643
No 312
>TIGR02881 spore_V_K stage V sporulation protein K. Members of this protein family are the stage V sporulation protein K (SpoVK), a close homolog of the Rubisco expression protein CbbX (TIGR02880) and a members of the ATPase family associated with various cellular activities (pfam00004). Members are strictly limited to bacterial endospore-forming species, but are not universal in this group and are missing from the Clostridium group.
Probab=95.52 E-value=0.081 Score=53.37 Aligned_cols=21 Identities=33% Similarity=0.354 Sum_probs=17.3
Q ss_pred CEEEEEcCCCCcHHHHHHHHH
Q 006122 66 ATTIIVGETGSGKTTQIPQYL 86 (660)
Q Consensus 66 ~~vii~apTGsGKT~~ip~~l 86 (660)
.++++.||+|+|||+++-.+.
T Consensus 43 ~~vll~GppGtGKTtlA~~ia 63 (261)
T TIGR02881 43 LHMIFKGNPGTGKTTVARILG 63 (261)
T ss_pred ceEEEEcCCCCCHHHHHHHHH
Confidence 578999999999997775554
No 313
>PF01637 Arch_ATPase: Archaeal ATPase; InterPro: IPR011579 This domain has been found in a number of bacterial and archaeal proteins, all of which contain a conserved P-loop motif that is involved in binding ATP.; GO: 0005524 ATP binding; PDB: 2FNA_A 2QEN_A.
Probab=95.50 E-value=0.052 Score=53.32 Aligned_cols=34 Identities=26% Similarity=0.525 Sum_probs=26.1
Q ss_pred HHHHHHHhc--CCEEEEEcCCCCcHHHHHHHHHHhc
Q 006122 56 TAILYLVET--HATTIIVGETGSGKTTQIPQYLKEA 89 (660)
Q Consensus 56 ~~i~~~l~~--~~~vii~apTGsGKT~~ip~~l~~~ 89 (660)
+++.+.+.+ ++.++|.||-|+|||+++-.++...
T Consensus 9 ~~l~~~l~~~~~~~~~l~G~rg~GKTsLl~~~~~~~ 44 (234)
T PF01637_consen 9 EKLKELLESGPSQHILLYGPRGSGKTSLLKEFINEL 44 (234)
T ss_dssp HHHHHCHHH--SSEEEEEESTTSSHHHHHHHHHHHC
T ss_pred HHHHHHHHhhcCcEEEEEcCCcCCHHHHHHHHHHHh
Confidence 445555555 4889999999999999887776655
No 314
>PRK14948 DNA polymerase III subunits gamma and tau; Provisional
Probab=95.49 E-value=0.074 Score=60.19 Aligned_cols=57 Identities=23% Similarity=0.415 Sum_probs=32.3
Q ss_pred HHHHHHhcCCCCCCCcEEEEeCCCcCCcChhHHHHHHHHHHHhcCCceEEEeecccchHHH
Q 006122 151 VLLREMMDDPLLTKYSVIMVDEAHERSISTDILLGLLKKIQRCRSDLRLIISSATIEAKSM 211 (660)
Q Consensus 151 ~ll~~l~~~~~l~~~~~iIiDE~Her~~~~d~ll~~l~~~~~~~~~~kii~~SAT~~~~~~ 211 (660)
.++..+...+....+.+|||||+|. +..+....+++.+..-.....+|+ +|-+...+
T Consensus 108 eii~~a~~~p~~~~~KViIIDEad~--Lt~~a~naLLK~LEePp~~tvfIL--~t~~~~~l 164 (620)
T PRK14948 108 ELIERAQFAPVQARWKVYVIDECHM--LSTAAFNALLKTLEEPPPRVVFVL--ATTDPQRV 164 (620)
T ss_pred HHHHHHhhChhcCCceEEEEECccc--cCHHHHHHHHHHHhcCCcCeEEEE--EeCChhhh
Confidence 3444444455567889999999994 344455566666654333333333 34344433
No 315
>cd03222 ABC_RNaseL_inhibitor The ABC ATPase RNase L inhibitor (RLI) is a key enzyme in ribosomal biogenesis, formation of translation preinitiation complexes, and assembly of HIV capsids. RLI's are not transport proteins, and thus cluster with a group of soluble proteins that lack the transmembrane components commonly found in other members of the family. Structurally, RLI's have an N-terminal Fe-S domain and two nucleotide-binding domains, which are arranged to form two composite active sites in their interface cleft. RLI is one of the most conserved enzymes between archaea and eukaryotes with a sequence identity more than 48%. The high degree of evolutionary conservation suggests that RLI performs a central role in archaeal and eukaryotic physiology.
Probab=95.48 E-value=0.25 Score=46.44 Aligned_cols=96 Identities=23% Similarity=0.284 Sum_probs=54.6
Q ss_pred HHhcCCEEEEEcCCCCcHHHHHHHHHHhccccCCCeEEEEeCchHHHHHHHHHHHHHHhCCeeeeEEeeeeeccccCCCC
Q 006122 61 LVETHATTIIVGETGSGKTTQIPQYLKEAGWADGGRVIACTQPRRLAVQAVASRVAEEMGVKVGEEVGYTIRFEDFTNKD 140 (660)
Q Consensus 61 ~l~~~~~vii~apTGsGKT~~ip~~l~~~~~~~~~~~i~v~p~r~la~~~~~~~~~~~~~~~~~~~vg~~~~~~~~~~~~ 140 (660)
.+..+..+.|.||+||||||++-.+.-.... ..+. |.+-- ..++|..+.
T Consensus 21 ~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p-~~G~-i~~~g----------------------~~i~~~~q~------- 69 (177)
T cd03222 21 VVKEGEVIGIVGPNGTGKTTAVKILAGQLIP-NGDN-DEWDG----------------------ITPVYKPQY------- 69 (177)
T ss_pred EECCCCEEEEECCCCChHHHHHHHHHcCCCC-CCcE-EEECC----------------------EEEEEEccc-------
Confidence 4578899999999999999998765543321 2232 32211 012332110
Q ss_pred CceEEEechHHHHHHHhcCCCCCCCcEEEEeCCCcCCcChhHHHHHHHHHHH
Q 006122 141 LTAIKFLTDGVLLREMMDDPLLTKYSVIMVDEAHERSISTDILLGLLKKIQR 192 (660)
Q Consensus 141 ~~~I~v~T~~~ll~~l~~~~~l~~~~~iIiDE~Her~~~~d~ll~~l~~~~~ 192 (660)
.. .+-|.-.+......+..+-+++++||-- .+++......+...+..
T Consensus 70 -~~---LSgGq~qrv~laral~~~p~lllLDEPt-s~LD~~~~~~l~~~l~~ 116 (177)
T cd03222 70 -ID---LSGGELQRVAIAAALLRNATFYLFDEPS-AYLDIEQRLNAARAIRR 116 (177)
T ss_pred -CC---CCHHHHHHHHHHHHHhcCCCEEEEECCc-ccCCHHHHHHHHHHHHH
Confidence 00 3444433333333345567899999987 56776655555555444
No 316
>PHA03333 putative ATPase subunit of terminase; Provisional
Probab=95.48 E-value=0.45 Score=53.25 Aligned_cols=150 Identities=18% Similarity=0.119 Sum_probs=79.2
Q ss_pred HHHHHHHhcCCEEEEEcCCCCcHHHHHHHHHHhccccCCCeEEEEeCchHHHHHHHHHHHHHHh---CC-----eeeeEE
Q 006122 56 TAILYLVETHATTIIVGETGSGKTTQIPQYLKEAGWADGGRVIACTQPRRLAVQAVASRVAEEM---GV-----KVGEEV 127 (660)
Q Consensus 56 ~~i~~~l~~~~~vii~apTGsGKT~~ip~~l~~~~~~~~~~~i~v~p~r~la~~~~~~~~~~~~---~~-----~~~~~v 127 (660)
+++++.. +.+..++.+|=|.|||+.+-.++.......+.+ |+++-++.-.++++.+++...+ +. ..+..+
T Consensus 179 d~~~~~f-kq~~tV~taPRqrGKS~iVgi~l~~La~f~Gi~-IlvTAH~~~ts~evF~rv~~~le~lg~~~~fp~~~~iv 256 (752)
T PHA03333 179 DRIFDEY-GKCYTAATVPRRCGKTTIMAIILAAMISFLEID-IVVQAQRKTMCLTLYNRVETVVHAYQHKPWFPEEFKIV 256 (752)
T ss_pred HHHHHHH-hhcceEEEeccCCCcHHHHHHHHHHHHHhcCCe-EEEECCChhhHHHHHHHHHHHHHHhccccccCCCceEE
Confidence 3444444 345688899999999966654433222213334 5555555555555555444332 21 111111
Q ss_pred ---e--eeeecccc--CCCCCceEEEechHHHHHHHhcCCCCCCCcEEEEeCCCcCCcChhHHHHHHHHHHHhcCCceEE
Q 006122 128 ---G--YTIRFEDF--TNKDLTAIKFLTDGVLLREMMDDPLLTKYSVIMVDEAHERSISTDILLGLLKKIQRCRSDLRLI 200 (660)
Q Consensus 128 ---g--~~~~~~~~--~~~~~~~I~v~T~~~ll~~l~~~~~l~~~~~iIiDE~Her~~~~d~ll~~l~~~~~~~~~~kii 200 (660)
| ..+.+... ...+.+.|.+.+... +...-..++++|+|||+. +..+.+..++-.+.. .+.++|
T Consensus 257 ~vkgg~E~I~f~~p~gak~G~sti~F~Ars~------~s~RG~~~DLLIVDEAAf--I~~~~l~aIlP~l~~--~~~k~I 326 (752)
T PHA03333 257 TLKGTDENLEYISDPAAKEGKTTAHFLASSP------NAARGQNPDLVIVDEAAF--VNPGALLSVLPLMAV--KGTKQI 326 (752)
T ss_pred EeeCCeeEEEEecCcccccCcceeEEecccC------CCcCCCCCCEEEEECccc--CCHHHHHHHHHHHcc--CCCceE
Confidence 1 00111111 110014455543321 111124679999999994 444666665555443 367889
Q ss_pred EeecccchHHHHHHhhc
Q 006122 201 ISSATIEAKSMSAFFHA 217 (660)
Q Consensus 201 ~~SAT~~~~~~~~~~~~ 217 (660)
++|.+-+.+.+..++.+
T Consensus 327 iISS~~~~~s~tS~L~n 343 (752)
T PHA03333 327 HISSPVDADSWISRVGE 343 (752)
T ss_pred EEeCCCCcchHHHHhhh
Confidence 99999888877777766
No 317
>COG2909 MalT ATP-dependent transcriptional regulator [Transcription]
Probab=95.46 E-value=0.067 Score=60.50 Aligned_cols=145 Identities=17% Similarity=0.149 Sum_probs=72.7
Q ss_pred HHHHHHHHHHHhc---CCEEEEEcCCCCcHHHHHHHHHHhccccCCCeEEEEe-CchHHHHHHHHHHHHHHhCCeeeeEE
Q 006122 52 YKYRTAILYLVET---HATTIIVGETGSGKTTQIPQYLKEAGWADGGRVIACT-QPRRLAVQAVASRVAEEMGVKVGEEV 127 (660)
Q Consensus 52 ~~~~~~i~~~l~~---~~~vii~apTGsGKT~~ip~~l~~~~~~~~~~~i~v~-p~r~la~~~~~~~~~~~~~~~~~~~v 127 (660)
+..+..+++.+.. .+.++|++|.|+||||++.++.... .++..+.+++ -...---....+++....+..+....
T Consensus 21 ~v~R~rL~~~L~~~~~~RL~li~APAGfGKttl~aq~~~~~--~~~~~v~Wlslde~dndp~rF~~yLi~al~~~~p~~~ 98 (894)
T COG2909 21 YVVRPRLLDRLRRANDYRLILISAPAGFGKTTLLAQWRELA--ADGAAVAWLSLDESDNDPARFLSYLIAALQQATPTLG 98 (894)
T ss_pred ccccHHHHHHHhcCCCceEEEEeCCCCCcHHHHHHHHHHhc--CcccceeEeecCCccCCHHHHHHHHHHHHHHhCcccc
Confidence 3445666776655 4789999999999999999997522 1233333332 12211122334443333322111111
Q ss_pred eeeeeccccCCCCCceEEEechHHHHHHHhcCC-CCCCCcEEEEeCCCcCCcChhHHHHHHHHHHHhcCCceEEEeeccc
Q 006122 128 GYTIRFEDFTNKDLTAIKFLTDGVLLREMMDDP-LLTKYSVIMVDEAHERSISTDILLGLLKKIQRCRSDLRLIISSATI 206 (660)
Q Consensus 128 g~~~~~~~~~~~~~~~I~v~T~~~ll~~l~~~~-~l~~~~~iIiDE~Her~~~~d~ll~~l~~~~~~~~~~kii~~SAT~ 206 (660)
+... ... ..+. +..-..++..+..+- ...+.=++|+|..| +-.+...-.++-..+...++++.+|+.|=+-
T Consensus 99 ~~a~----~l~--q~~~-~~~l~~l~~~L~~Ela~~~~pl~LVlDDyH-li~~~~l~~~l~fLl~~~P~~l~lvv~SR~r 170 (894)
T COG2909 99 DEAQ----TLL--QKHQ-YVSLESLLSSLLNELASYEGPLYLVLDDYH-LISDPALHEALRFLLKHAPENLTLVVTSRSR 170 (894)
T ss_pred HHHH----HHH--Hhcc-cccHHHHHHHHHHHHHhhcCceEEEecccc-ccCcccHHHHHHHHHHhCCCCeEEEEEeccC
Confidence 1000 000 0111 111122333322211 12233589999999 5555444444444455577889999988664
No 318
>COG3267 ExeA Type II secretory pathway, component ExeA (predicted ATPase) [Intracellular trafficking and secretion]
Probab=95.46 E-value=0.18 Score=49.26 Aligned_cols=61 Identities=15% Similarity=0.210 Sum_probs=39.8
Q ss_pred HHHHHHhcCC-EEEEEcCCCCcHHHHHHHHHHhccccCCCeEEEEeCchHHHHHHHHHHHHHHh
Q 006122 57 AILYLVETHA-TTIIVGETGSGKTTQIPQYLKEAGWADGGRVIACTQPRRLAVQAVASRVAEEM 119 (660)
Q Consensus 57 ~i~~~l~~~~-~vii~apTGsGKT~~ip~~l~~~~~~~~~~~i~v~p~r~la~~~~~~~~~~~~ 119 (660)
.+-..+..++ .+.++|+-|||||+..- .+... ...+..++++.+-..+....+..++...+
T Consensus 42 ~l~~~i~d~qg~~~vtGevGsGKTv~~R-al~~s-~~~d~~~~v~i~~~~~s~~~~~~ai~~~l 103 (269)
T COG3267 42 MLHAAIADGQGILAVTGEVGSGKTVLRR-ALLAS-LNEDQVAVVVIDKPTLSDATLLEAIVADL 103 (269)
T ss_pred HHHHHHhcCCceEEEEecCCCchhHHHH-HHHHh-cCCCceEEEEecCcchhHHHHHHHHHHHh
Confidence 3444566677 89999999999997666 33333 22344455566666677777777665554
No 319
>COG1474 CDC6 Cdc6-related protein, AAA superfamily ATPase [DNA replication, recombination, and repair / Posttranslational modification, protein turnover, chaperones]
Probab=95.45 E-value=0.097 Score=55.25 Aligned_cols=22 Identities=36% Similarity=0.611 Sum_probs=16.5
Q ss_pred CEEEEEcCCCCcHHHHHHHHHH
Q 006122 66 ATTIIVGETGSGKTTQIPQYLK 87 (660)
Q Consensus 66 ~~vii~apTGsGKT~~ip~~l~ 87 (660)
.+++|.|+||+|||..+-..+.
T Consensus 43 ~n~~iyG~~GTGKT~~~~~v~~ 64 (366)
T COG1474 43 SNIIIYGPTGTGKTATVKFVME 64 (366)
T ss_pred ccEEEECCCCCCHhHHHHHHHH
Confidence 4699999999999965544433
No 320
>PF00437 T2SE: Type II/IV secretion system protein; InterPro: IPR001482 A number of bacterial proteins, some of which are involved in a general secretion pathway (GSP) for the export of proteins (also called the type II pathway) belong to this group [, ]. These proteins are probably located in the cytoplasm and, on the basis of the presence of a conserved P-loop region IPR001687 from INTERPRO, bind ATP.; GO: 0005524 ATP binding, 0006810 transport, 0005622 intracellular; PDB: 1NLZ_C 2PT7_B 1OPX_A 1NLY_A 1G6O_B 2OAQ_2 2OAP_1 2JNQ_A 2JMZ_A 2GZA_B ....
Probab=95.43 E-value=0.022 Score=57.81 Aligned_cols=46 Identities=30% Similarity=0.423 Sum_probs=30.8
Q ss_pred HHHHhcCCEEEEEcCCCCcHHHHHHHHHHhccccCCCeEEEEeCchH
Q 006122 59 LYLVETHATTIIVGETGSGKTTQIPQYLKEAGWADGGRVIACTQPRR 105 (660)
Q Consensus 59 ~~~l~~~~~vii~apTGsGKT~~ip~~l~~~~~~~~~~~i~v~p~r~ 105 (660)
..+++.+.+++++|+|||||||++-.++..... ...+++.+-.+.+
T Consensus 121 ~~~v~~~~~ili~G~tGSGKTT~l~all~~i~~-~~~~iv~iEd~~E 166 (270)
T PF00437_consen 121 RSAVRGRGNILISGPTGSGKTTLLNALLEEIPP-EDERIVTIEDPPE 166 (270)
T ss_dssp HHCHHTTEEEEEEESTTSSHHHHHHHHHHHCHT-TTSEEEEEESSS-
T ss_pred hhccccceEEEEECCCccccchHHHHHhhhccc-cccceEEeccccc
Confidence 334567889999999999999999777654432 2245555544543
No 321
>TIGR02868 CydC thiol reductant ABC exporter, CydC subunit. The gene pair cydCD encodes an ABC-family transporter in which each gene contains an N-terminal membrane-spanning domain (pfam00664) and a C-terminal ATP-binding domain (pfam00005). In E. coli these genes were discovered as mutants which caused the terminal heme-copper oxidase complex cytochrome bd to fail to assemble. Recent work has shown that the transporter is involved in export of redox-active thiol compounds such as cysteine and glutathione. The linkage to assembly of the cytochrome bd complex is further supported by the conserved operon structure found outside the gammaproteobacteria (cydABCD) containing both the transporter and oxidase genes components. The genes used as the seed members for this model are all either found in the gammproteobacterial context or the CydABCD context. All members of this family scoring above trusted at the time of its creation were from genomes which encode a cytochrome bd complex.
Probab=95.42 E-value=0.022 Score=63.87 Aligned_cols=28 Identities=25% Similarity=0.309 Sum_probs=23.3
Q ss_pred HhcCCEEEEEcCCCCcHHHHHHHHHHhc
Q 006122 62 VETHATTIIVGETGSGKTTQIPQYLKEA 89 (660)
Q Consensus 62 l~~~~~vii~apTGsGKT~~ip~~l~~~ 89 (660)
+..|+.+.|+||+||||||++-.++...
T Consensus 358 i~~G~~vaIvG~SGsGKSTLl~lL~g~~ 385 (529)
T TIGR02868 358 LPPGERVAILGPSGSGKSTLLMLLTGLL 385 (529)
T ss_pred EcCCCEEEEECCCCCCHHHHHHHHhcCC
Confidence 4689999999999999999987665443
No 322
>PRK13894 conjugal transfer ATPase TrbB; Provisional
Probab=95.32 E-value=0.037 Score=57.28 Aligned_cols=53 Identities=30% Similarity=0.422 Sum_probs=34.8
Q ss_pred HHHHHHHHHhcCCEEEEEcCCCCcHHHHHHHHHHhcc-ccCCCeEEEEeCchHH
Q 006122 54 YRTAILYLVETHATTIIVGETGSGKTTQIPQYLKEAG-WADGGRVIACTQPRRL 106 (660)
Q Consensus 54 ~~~~i~~~l~~~~~vii~apTGsGKT~~ip~~l~~~~-~~~~~~~i~v~p~r~l 106 (660)
+.+.+..++..+.+++|+|+|||||||++-.++.... ..+..+++.+-.+.++
T Consensus 137 ~~~~L~~~v~~~~~ilI~G~tGSGKTTll~aL~~~~~~~~~~~rivtIEd~~El 190 (319)
T PRK13894 137 QREAIIAAVRAHRNILVIGGTGSGKTTLVNAIINEMVIQDPTERVFIIEDTGEI 190 (319)
T ss_pred HHHHHHHHHHcCCeEEEECCCCCCHHHHHHHHHHhhhhcCCCceEEEEcCCCcc
Confidence 3344555678899999999999999988876654321 1233455555555544
No 323
>PF00580 UvrD-helicase: UvrD/REP helicase N-terminal domain; InterPro: IPR000212 Members of this family are helicases that catalyse ATP dependent unwinding of double stranded DNA to single stranded DNA. THe family includes both Rep and UvrD helcases. The Rep family helicases are composed of four structural domains []. The Rep proteins function as dimers.; GO: 0003677 DNA binding, 0004003 ATP-dependent DNA helicase activity, 0005524 ATP binding; PDB: 1UAA_B 1W36_B 3K70_B 2IS6_B 3LFU_A 2IS2_B 2IS1_B 2IS4_A 1QHG_A 1PJR_A ....
Probab=95.32 E-value=0.036 Score=57.32 Aligned_cols=65 Identities=23% Similarity=0.275 Sum_probs=40.6
Q ss_pred HHHHHHHHHHHhcCCEEEEEcCCCCcHHHHHHHHH---HhccccCCCeEEEEeCchHHHHHHHHHHHHHHh
Q 006122 52 YKYRTAILYLVETHATTIIVGETGSGKTTQIPQYL---KEAGWADGGRVIACTQPRRLAVQAVASRVAEEM 119 (660)
Q Consensus 52 ~~~~~~i~~~l~~~~~vii~apTGsGKT~~ip~~l---~~~~~~~~~~~i~v~p~r~la~~~~~~~~~~~~ 119 (660)
...|.+++.. .++.++|.|..|||||+.+-.-+ +.....+..+++++|.++. ++..+..|+...+
T Consensus 2 ~~eQ~~~i~~--~~~~~lV~a~AGSGKT~~l~~ri~~ll~~~~~~~~~Il~lTft~~-aa~e~~~ri~~~l 69 (315)
T PF00580_consen 2 TDEQRRIIRS--TEGPLLVNAGAGSGKTTTLLERIAYLLYEGGVPPERILVLTFTNA-AAQEMRERIRELL 69 (315)
T ss_dssp -HHHHHHHHS---SSEEEEEE-TTSSHHHHHHHHHHHHHHTSSSTGGGEEEEESSHH-HHHHHHHHHHHHH
T ss_pred CHHHHHHHhC--CCCCEEEEeCCCCCchHHHHHHHHHhhccccCChHHheecccCHH-HHHHHHHHHHHhc
Confidence 3567777776 56779999999999996654322 2222123455777887776 4556677776644
No 324
>COG1444 Predicted P-loop ATPase fused to an acetyltransferase [General function prediction only]
Probab=95.30 E-value=0.39 Score=54.56 Aligned_cols=147 Identities=20% Similarity=0.193 Sum_probs=79.9
Q ss_pred HhHHHHhcCCCcHHHHHHHHHHHhcCC-EEEEEcCCCCcHHHHHHHHHHhccccCCCeEEEEeCchHHHHHHHHHHHHHH
Q 006122 40 ASIEKQRQRLPVYKYRTAILYLVETHA-TTIIVGETGSGKTTQIPQYLKEAGWADGGRVIACTQPRRLAVQAVASRVAEE 118 (660)
Q Consensus 40 ~~~~~~~~~lPi~~~~~~i~~~l~~~~-~vii~apTGsGKT~~ip~~l~~~~~~~~~~~i~v~p~r~la~~~~~~~~~~~ 118 (660)
.++.+.-...|-..+.+.+...+...+ .++|+|.=|=|||..+-..+.......+...|+||-|...+.+.+.++..+.
T Consensus 205 ~~l~~l~~T~dQ~~~l~~~~~l~~~~~~~~vlTAdRGRGKSA~lGi~~~~~~~~~~~~~iiVTAP~~~nv~~Lf~fa~~~ 284 (758)
T COG1444 205 RELYELCLTEDQAEALEILERLLDAPKRALVLTADRGRGKSAALGIALAAAARLAGSVRIIVTAPTPANVQTLFEFAGKG 284 (758)
T ss_pred HHHhhhhcChhHHHHHHHHHHHHcCCCceEEEEcCCCCcHhHHHhHHHHHHHHhcCCceEEEeCCCHHHHHHHHHHHHHh
Confidence 344443334444444444444444444 8999999999999776644432221121235777777777777776655443
Q ss_pred ---hCCeeeeEEeeeeeccc-cCCCCCceEEEechHHHHHHHhcCCCCCCCcEEEEeCCCcCCcChhHHHHHHHHHHHhc
Q 006122 119 ---MGVKVGEEVGYTIRFED-FTNKDLTAIKFLTDGVLLREMMDDPLLTKYSVIMVDEAHERSISTDILLGLLKKIQRCR 194 (660)
Q Consensus 119 ---~~~~~~~~vg~~~~~~~-~~~~~~~~I~v~T~~~ll~~l~~~~~l~~~~~iIiDE~Her~~~~d~ll~~l~~~~~~~ 194 (660)
+|.+-+ +-.....+. ....+...|-|..|.... . .-+++|||||= .+...++..++. .
T Consensus 285 l~~lg~~~~--v~~d~~g~~~~~~~~~~~i~y~~P~~a~-~--------~~DllvVDEAA--aIplplL~~l~~----~- 346 (758)
T COG1444 285 LEFLGYKRK--VAPDALGEIREVSGDGFRIEYVPPDDAQ-E--------EADLLVVDEAA--AIPLPLLHKLLR----R- 346 (758)
T ss_pred HHHhCCccc--cccccccceeeecCCceeEEeeCcchhc-c--------cCCEEEEehhh--cCChHHHHHHHh----h-
Confidence 332211 000000000 111124558888887654 1 15899999997 444444444333 2
Q ss_pred CCceEEEeeccc
Q 006122 195 SDLRLIISSATI 206 (660)
Q Consensus 195 ~~~kii~~SAT~ 206 (660)
.+.++||.|+
T Consensus 347 --~~rv~~sTTI 356 (758)
T COG1444 347 --FPRVLFSTTI 356 (758)
T ss_pred --cCceEEEeee
Confidence 3468899998
No 325
>PRK13851 type IV secretion system protein VirB11; Provisional
Probab=95.29 E-value=0.033 Score=58.09 Aligned_cols=46 Identities=26% Similarity=0.294 Sum_probs=31.0
Q ss_pred HHHHHhcCCEEEEEcCCCCcHHHHHHHHHHhccccCCCeEEEEeCchH
Q 006122 58 ILYLVETHATTIIVGETGSGKTTQIPQYLKEAGWADGGRVIACTQPRR 105 (660)
Q Consensus 58 i~~~l~~~~~vii~apTGsGKT~~ip~~l~~~~~~~~~~~i~v~p~r~ 105 (660)
+-.++..+.+++|+|||||||||++-.++.... ...+++.+=.+.+
T Consensus 155 l~~~v~~~~nilI~G~tGSGKTTll~aLl~~i~--~~~rivtiEd~~E 200 (344)
T PRK13851 155 LHACVVGRLTMLLCGPTGSGKTTMSKTLISAIP--PQERLITIEDTLE 200 (344)
T ss_pred HHHHHHcCCeEEEECCCCccHHHHHHHHHcccC--CCCCEEEECCCcc
Confidence 334567789999999999999999876654432 3344444444443
No 326
>cd03229 ABC_Class3 This class is comprised of all BPD (Binding Protein Dependent) systems that are largely represented in archaea and eubacteria and are primarily involved in scavenging solutes from the environment. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=95.28 E-value=0.071 Score=50.32 Aligned_cols=139 Identities=15% Similarity=0.184 Sum_probs=68.8
Q ss_pred HhcCCEEEEEcCCCCcHHHHHHHHHHhccccCCCeEEEEeCchHHHHHH-HHHHHHHHhCCeeeeEEeeeeeccccC---
Q 006122 62 VETHATTIIVGETGSGKTTQIPQYLKEAGWADGGRVIACTQPRRLAVQA-VASRVAEEMGVKVGEEVGYTIRFEDFT--- 137 (660)
Q Consensus 62 l~~~~~vii~apTGsGKT~~ip~~l~~~~~~~~~~~i~v~p~r~la~~~-~~~~~~~~~~~~~~~~vg~~~~~~~~~--- 137 (660)
+..++.+.|.||.||||||++-.+.-.... ..+. |.+-- ..+.... ...... ..++|........
T Consensus 23 i~~G~~~~i~G~nGsGKSTLl~~l~G~~~~-~~G~-i~~~g-~~~~~~~~~~~~~~--------~~i~~~~q~~~~~~~~ 91 (178)
T cd03229 23 IEAGEIVALLGPSGSGKSTLLRCIAGLEEP-DSGS-ILIDG-EDLTDLEDELPPLR--------RRIGMVFQDFALFPHL 91 (178)
T ss_pred EcCCCEEEEECCCCCCHHHHHHHHhCCCCC-CceE-EEECC-EEccccchhHHHHh--------hcEEEEecCCccCCCC
Confidence 357889999999999999988766543221 2233 32211 1110000 000011 1122222111110
Q ss_pred CCCCceEEE-echHHHHHHHhcCCCCCCCcEEEEeCCCcCCcChhHHHHHHHHHHHhcCC-ceEEEeecccchHHHHHH
Q 006122 138 NKDLTAIKF-LTDGVLLREMMDDPLLTKYSVIMVDEAHERSISTDILLGLLKKIQRCRSD-LRLIISSATIEAKSMSAF 214 (660)
Q Consensus 138 ~~~~~~I~v-~T~~~ll~~l~~~~~l~~~~~iIiDE~Her~~~~d~ll~~l~~~~~~~~~-~kii~~SAT~~~~~~~~~ 214 (660)
+. .-.+.+ .+.|...+......++.+..++|+||-- .+++.+....+.+.+.....+ -+.++++.. +.+.+.++
T Consensus 92 t~-~~~l~~~lS~G~~qr~~la~al~~~p~llilDEP~-~~LD~~~~~~l~~~l~~~~~~~~~tiii~sH-~~~~~~~~ 167 (178)
T cd03229 92 TV-LENIALGLSGGQQQRVALARALAMDPDVLLLDEPT-SALDPITRREVRALLKSLQAQLGITVVLVTH-DLDEAARL 167 (178)
T ss_pred CH-HHheeecCCHHHHHHHHHHHHHHCCCCEEEEeCCc-ccCCHHHHHHHHHHHHHHHHhcCCEEEEEeC-CHHHHHHh
Confidence 11 112222 5666665555444456778999999988 577776666665555543332 233444332 44444443
No 327
>PRK07940 DNA polymerase III subunit delta'; Validated
Probab=95.24 E-value=0.16 Score=54.24 Aligned_cols=51 Identities=14% Similarity=0.283 Sum_probs=30.7
Q ss_pred HHHHHhcCCCCCCCcEEEEeCCCcCCcChhHHHHHHHHHHHhcCCceEEEeecc
Q 006122 152 LLREMMDDPLLTKYSVIMVDEAHERSISTDILLGLLKKIQRCRSDLRLIISSAT 205 (660)
Q Consensus 152 ll~~l~~~~~l~~~~~iIiDE~Her~~~~d~ll~~l~~~~~~~~~~kii~~SAT 205 (660)
+.+.+...+...++.++||||+|. ++......+++.+..- ++-.++++.||
T Consensus 105 l~~~~~~~p~~~~~kViiIDead~--m~~~aanaLLk~LEep-~~~~~fIL~a~ 155 (394)
T PRK07940 105 LVTIAARRPSTGRWRIVVIEDADR--LTERAANALLKAVEEP-PPRTVWLLCAP 155 (394)
T ss_pred HHHHHHhCcccCCcEEEEEechhh--cCHHHHHHHHHHhhcC-CCCCeEEEEEC
Confidence 444444556677889999999993 3444455566655433 33344555554
No 328
>PRK09087 hypothetical protein; Validated
Probab=95.24 E-value=0.17 Score=49.71 Aligned_cols=22 Identities=27% Similarity=0.471 Sum_probs=18.2
Q ss_pred CCEEEEEcCCCCcHHHHHHHHH
Q 006122 65 HATTIIVGETGSGKTTQIPQYL 86 (660)
Q Consensus 65 ~~~vii~apTGsGKT~~ip~~l 86 (660)
++.+++.||+|||||+++-.+.
T Consensus 44 ~~~l~l~G~~GsGKThLl~~~~ 65 (226)
T PRK09087 44 SPVVVLAGPVGSGKTHLASIWR 65 (226)
T ss_pred CCeEEEECCCCCCHHHHHHHHH
Confidence 5669999999999998876544
No 329
>CHL00181 cbbX CbbX; Provisional
Probab=95.23 E-value=0.24 Score=50.54 Aligned_cols=23 Identities=26% Similarity=0.313 Sum_probs=17.9
Q ss_pred CCEEEEEcCCCCcHHHHHHHHHH
Q 006122 65 HATTIIVGETGSGKTTQIPQYLK 87 (660)
Q Consensus 65 ~~~vii~apTGsGKT~~ip~~l~ 87 (660)
+.++++.||+|+|||+++-.+..
T Consensus 59 ~~~ill~G~pGtGKT~lAr~la~ 81 (287)
T CHL00181 59 GLHMSFTGSPGTGKTTVALKMAD 81 (287)
T ss_pred CceEEEECCCCCCHHHHHHHHHH
Confidence 44689999999999977665533
No 330
>COG1875 NYN ribonuclease and ATPase of PhoH family domains [General function prediction only]
Probab=95.22 E-value=0.099 Score=53.52 Aligned_cols=37 Identities=22% Similarity=0.179 Sum_probs=30.4
Q ss_pred cCCCcHHHHHHHHHHHhcCC--EEEEEcCCCCcHHHHHH
Q 006122 47 QRLPVYKYRTAILYLVETHA--TTIIVGETGSGKTTQIP 83 (660)
Q Consensus 47 ~~lPi~~~~~~i~~~l~~~~--~vii~apTGsGKT~~ip 83 (660)
.-.|...+|.-.++++...+ .|.+.|+.|||||.++-
T Consensus 225 Gi~prn~eQ~~ALdlLld~dI~lV~L~G~AGtGKTlLAL 263 (436)
T COG1875 225 GIRPRNAEQRVALDLLLDDDIDLVSLGGKAGTGKTLLAL 263 (436)
T ss_pred ccCcccHHHHHHHHHhcCCCCCeEEeeccCCccHhHHHH
Confidence 44689999999999998764 58889999999994443
No 331
>COG0553 HepA Superfamily II DNA/RNA helicases, SNF2 family [Transcription / DNA replication, recombination, and repair]
Probab=95.19 E-value=0.054 Score=64.76 Aligned_cols=112 Identities=22% Similarity=0.314 Sum_probs=88.1
Q ss_pred cEEEEcCCHHHHHHHHHHHHHHhhhccCCCCCeEEEEccCCCCHHHHhhhcCCCCCC--CcEEEEeCCCcccccCCCCeE
Q 006122 278 DILVFLTGQDDIDATIQLLTEEARTSKKNSSGLIILPLYSGLSRAEQEQVFSPTPRG--KRKVVISTNIAETSLTLEGIV 355 (660)
Q Consensus 278 ~iLVF~~~~~~i~~l~~~L~~~~~~~~~~~~~~~v~~lh~~l~~~~r~~v~~~f~~g--~~~vlvaT~i~e~Gidip~v~ 355 (660)
++|+|.+-.....-+...+... ++....++|+++..+|...++.|.++ ..-.+++|...+.|+|+-.-+
T Consensus 713 kvlifsq~t~~l~il~~~l~~~---------~~~~~~ldG~~~~~~r~~~i~~f~~~~~~~v~lls~kagg~glnLt~a~ 783 (866)
T COG0553 713 KVLIFSQFTPVLDLLEDYLKAL---------GIKYVRLDGSTPAKRRQELIDRFNADEEEKVFLLSLKAGGLGLNLTGAD 783 (866)
T ss_pred cEEEEeCcHHHHHHHHHHHHhc---------CCcEEEEeCCCChhhHHHHHHHhhcCCCCceEEEEecccccceeecccc
Confidence 7999999999888888888765 46789999999999999999999875 566778888999999999999
Q ss_pred EEEeCCCccceeecCCCCcccceeeecCHHhHHHhhcccCCCCCcEEEEccChHHhhh
Q 006122 356 YVVDSGFSKQRFYNPISDIENLVVAPISKASARQRAGRAGRVRPGKCYRLYTEEYFVK 413 (660)
Q Consensus 356 ~VId~g~~k~~~~~~~~~~~~l~~~~~s~~~~~QR~GRaGR~~~G~~~~l~~~~~~~~ 413 (660)
+||. ||+..+ |.-..++..|+-|.|+.++=..|++.+++..+.
T Consensus 784 ~vi~--------~d~~wn-------p~~~~Qa~dRa~RigQ~~~v~v~r~i~~~tiEe 826 (866)
T COG0553 784 TVIL--------FDPWWN-------PAVELQAIDRAHRIGQKRPVKVYRLITRGTIEE 826 (866)
T ss_pred eEEE--------eccccC-------hHHHHHHHHHHHHhcCcceeEEEEeecCCcHHH
Confidence 9998 444322 333444555555556668888999999887654
No 332
>PLN03025 replication factor C subunit; Provisional
Probab=95.18 E-value=0.2 Score=52.18 Aligned_cols=24 Identities=38% Similarity=0.527 Sum_probs=19.5
Q ss_pred CEEEEEcCCCCcHHHHHHHHHHhc
Q 006122 66 ATTIIVGETGSGKTTQIPQYLKEA 89 (660)
Q Consensus 66 ~~vii~apTGsGKT~~ip~~l~~~ 89 (660)
.++++.||+|+|||+.+-.+..+.
T Consensus 35 ~~lll~Gp~G~GKTtla~~la~~l 58 (319)
T PLN03025 35 PNLILSGPPGTGKTTSILALAHEL 58 (319)
T ss_pred ceEEEECCCCCCHHHHHHHHHHHH
Confidence 578999999999998877665554
No 333
>PF13555 AAA_29: P-loop containing region of AAA domain
Probab=95.18 E-value=0.025 Score=42.67 Aligned_cols=22 Identities=36% Similarity=0.528 Sum_probs=18.2
Q ss_pred CCEEEEEcCCCCcHHHHHHHHH
Q 006122 65 HATTIIVGETGSGKTTQIPQYL 86 (660)
Q Consensus 65 ~~~vii~apTGsGKT~~ip~~l 86 (660)
+++++|.|++||||||++-.+.
T Consensus 23 g~~tli~G~nGsGKSTllDAi~ 44 (62)
T PF13555_consen 23 GDVTLITGPNGSGKSTLLDAIQ 44 (62)
T ss_pred CcEEEEECCCCCCHHHHHHHHH
Confidence 4589999999999998876443
No 334
>PRK06620 hypothetical protein; Validated
Probab=95.18 E-value=0.08 Score=51.54 Aligned_cols=20 Identities=35% Similarity=0.401 Sum_probs=16.7
Q ss_pred CEEEEEcCCCCcHHHHHHHH
Q 006122 66 ATTIIVGETGSGKTTQIPQY 85 (660)
Q Consensus 66 ~~vii~apTGsGKT~~ip~~ 85 (660)
+.+++.||+|||||+++-.+
T Consensus 45 ~~l~l~Gp~G~GKThLl~a~ 64 (214)
T PRK06620 45 FTLLIKGPSSSGKTYLTKIW 64 (214)
T ss_pred ceEEEECCCCCCHHHHHHHH
Confidence 55899999999999777643
No 335
>COG3421 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=95.17 E-value=0.14 Score=55.50 Aligned_cols=135 Identities=22% Similarity=0.232 Sum_probs=68.5
Q ss_pred EEcCCCCcHHHHHHHHHHhccccCC-CeEEEEeCchHHHHH-------HH-HHHHHHHhCCeee-eEEe-eeeeccccCC
Q 006122 70 IVGETGSGKTTQIPQYLKEAGWADG-GRVIACTQPRRLAVQ-------AV-ASRVAEEMGVKVG-EEVG-YTIRFEDFTN 138 (660)
Q Consensus 70 i~apTGsGKT~~ip~~l~~~~~~~~-~~~i~v~p~r~la~~-------~~-~~~~~~~~~~~~~-~~vg-~~~~~~~~~~ 138 (660)
..+.||||||.+...++++. +..| ...++.+..-.+... .+ ++.+-.+- +..+ ..+. -.+..-+. .
T Consensus 2 f~matgsgkt~~ma~lil~~-y~kgyr~flffvnq~nilekt~~nftd~~s~kylf~e~-i~~~d~~i~ikkvn~fse-h 78 (812)
T COG3421 2 FEMATGSGKTLVMAGLILEC-YKKGYRNFLFFVNQANILEKTKLNFTDSVSSKYLFSEN-ININDENIEIKKVNNFSE-H 78 (812)
T ss_pred cccccCCChhhHHHHHHHHH-HHhchhhEEEEecchhHHHHHHhhcccchhhhHhhhhh-hhcCCceeeeeeecccCc-c
Confidence 35789999997776666655 2233 234544443333222 11 11111111 1111 1111 01111111 2
Q ss_pred CCCceEEEechHHHHHHHhcCC-------CCCCCcE-EEEeCCCcCCcCh-----h------HHHHHHHHHHHhcCCceE
Q 006122 139 KDLTAIKFLTDGVLLREMMDDP-------LLTKYSV-IMVDEAHERSIST-----D------ILLGLLKKIQRCRSDLRL 199 (660)
Q Consensus 139 ~~~~~I~v~T~~~ll~~l~~~~-------~l~~~~~-iIiDE~Her~~~~-----d------~ll~~l~~~~~~~~~~ki 199 (660)
.+...|.++|.+.|...+.... .+.+..+ ++-||+|+....+ | -+...++...+..++--+
T Consensus 79 nd~iei~fttiq~l~~d~~~~ken~itledl~~~klvfl~deahhln~~tkkk~~de~~~~~~we~~v~la~~~nkd~~~ 158 (812)
T COG3421 79 NDAIEIYFTTIQGLFSDFTRAKENAITLEDLKDQKLVFLADEAHHLNTETKKKLNDEASEKRNWESVVKLALEQNKDNLL 158 (812)
T ss_pred CCceEEEEeehHHHHHHHHhhccccccHhhHhhCceEEEechhhhhhhhhhhhcccHHHHHhhHHHHHHHHHhcCCCcee
Confidence 3368899999999887764432 2444454 5669999432222 1 123334444556677778
Q ss_pred EEeecccc
Q 006122 200 IISSATIE 207 (660)
Q Consensus 200 i~~SAT~~ 207 (660)
+..|||.+
T Consensus 159 lef~at~~ 166 (812)
T COG3421 159 LEFSATIP 166 (812)
T ss_pred ehhhhcCC
Confidence 88999984
No 336
>TIGR02880 cbbX_cfxQ probable Rubsico expression protein CbbX. Proteins in this family are now designated CbbX. Some previously were CfxQ (carbon fixation Q). Its gene is often found immmediately downstream of the Rubisco large and small chain genes, and it is suggested to be necessary for Rubisco expression. CbbX has been shown to be necessary for photoautotrophic growth. This protein belongs to the larger family of pfam00004, ATPase family Associated with various cellular Activities. Within that larger family, members of this family are most closely related to the stage V sporulation protein K, or SpoVK, in endospore-forming bacteria such as Bacillus subtilis.
Probab=95.17 E-value=0.12 Score=52.70 Aligned_cols=36 Identities=31% Similarity=0.500 Sum_probs=22.4
Q ss_pred CEEEEEcCCCCcHHHHHH---HHHHhccccCCCeEEEEe
Q 006122 66 ATTIIVGETGSGKTTQIP---QYLKEAGWADGGRVIACT 101 (660)
Q Consensus 66 ~~vii~apTGsGKT~~ip---~~l~~~~~~~~~~~i~v~ 101 (660)
..+++.||+|||||+++- ..+...+....+..+.+.
T Consensus 59 ~~vll~G~pGTGKT~lA~~ia~~l~~~g~~~~~~~v~v~ 97 (284)
T TIGR02880 59 LHMSFTGNPGTGKTTVALRMAQILHRLGYVRKGHLVSVT 97 (284)
T ss_pred ceEEEEcCCCCCHHHHHHHHHHHHHHcCCcccceEEEec
Confidence 379999999999997663 334333333333444444
No 337
>cd01124 KaiC KaiC is a circadian clock protein primarily found in cyanobacteria KaiC is a RecA-like ATPase, having both Walker A and Walker B motifs. A related protein is found in archaea.
Probab=95.16 E-value=0.06 Score=51.10 Aligned_cols=36 Identities=33% Similarity=0.392 Sum_probs=27.4
Q ss_pred EEEEEcCCCCcHHHHHHHHHHhccccCCCeEEEEeCc
Q 006122 67 TTIIVGETGSGKTTQIPQYLKEAGWADGGRVIACTQP 103 (660)
Q Consensus 67 ~vii~apTGsGKT~~ip~~l~~~~~~~~~~~i~v~p~ 103 (660)
.++|.||+|+|||++.-+++.... ..+.++++++-.
T Consensus 1 ~~li~G~~G~GKT~l~~~~~~~~~-~~g~~v~~~s~e 36 (187)
T cd01124 1 STLLSGGPGTGKTTFALQFLYAGL-ARGEPGLYVTLE 36 (187)
T ss_pred CEEEEcCCCCCHHHHHHHHHHHHH-HCCCcEEEEECC
Confidence 378999999999988888887764 345667777643
No 338
>cd01130 VirB11-like_ATPase Type IV secretory pathway component VirB11, and related ATPases. The homohexamer, VirB11 is one of eleven Vir proteins, which are required for T-pilus biogenesis and virulence in the transfer of T-DNA from the Ti (tumor-inducing) plasmid of bacterial to plant cells. The pilus is a fibrous cell surface organelle, which mediates adhesion between bacteria during conjugative transfer or between bacteria and host eukaryotic cells during infection. VirB11- related ATPases include the archaeal flagella biosynthesis protein and the pilus assembly proteins CpaF/TadA and TrbB. This alignment contains the C-terminal domain, which is the ATPase.
Probab=95.08 E-value=0.053 Score=51.60 Aligned_cols=33 Identities=36% Similarity=0.451 Sum_probs=25.6
Q ss_pred HHHHHHHhcCCEEEEEcCCCCcHHHHHHHHHHh
Q 006122 56 TAILYLVETHATTIIVGETGSGKTTQIPQYLKE 88 (660)
Q Consensus 56 ~~i~~~l~~~~~vii~apTGsGKT~~ip~~l~~ 88 (660)
+-+-..+..+.+++|+|||||||||++-.++..
T Consensus 16 ~~l~~~v~~g~~i~I~G~tGSGKTTll~aL~~~ 48 (186)
T cd01130 16 AYLWLAVEARKNILISGGTGSGKTTLLNALLAF 48 (186)
T ss_pred HHHHHHHhCCCEEEEECCCCCCHHHHHHHHHhh
Confidence 334455678899999999999999988765543
No 339
>cd01131 PilT Pilus retraction ATPase PilT. PilT is a nucleotide binding protein responsible for the retraction of type IV pili, likely by pili disassembly. This retraction provides the force required for travel of bacteria in low water environments by a mechanism known as twitching motility.
Probab=95.07 E-value=0.033 Score=53.60 Aligned_cols=38 Identities=21% Similarity=0.421 Sum_probs=24.9
Q ss_pred CEEEEEcCCCCcHHHHHHHHHHhccccCCCeEEEEeCc
Q 006122 66 ATTIIVGETGSGKTTQIPQYLKEAGWADGGRVIACTQP 103 (660)
Q Consensus 66 ~~vii~apTGsGKT~~ip~~l~~~~~~~~~~~i~v~p~ 103 (660)
..++|+|||||||||.+-.++.......++.++.+-.|
T Consensus 2 GlilI~GptGSGKTTll~~ll~~~~~~~~~~i~t~e~~ 39 (198)
T cd01131 2 GLVLVTGPTGSGKSTTLAAMIDYINKNKTHHILTIEDP 39 (198)
T ss_pred cEEEEECCCCCCHHHHHHHHHHHhhhcCCcEEEEEcCC
Confidence 35899999999999988766554432223444444444
No 340
>PRK13709 conjugal transfer nickase/helicase TraI; Provisional
Probab=95.05 E-value=0.2 Score=62.60 Aligned_cols=124 Identities=18% Similarity=0.176 Sum_probs=72.3
Q ss_pred CCcHHHHHHHHHHHhc--CCEEEEEcCCCCcHHHHHHHHHHhc---cccCCCeEEEEeCchHHHHHHHHHHHHHHhCCee
Q 006122 49 LPVYKYRTAILYLVET--HATTIIVGETGSGKTTQIPQYLKEA---GWADGGRVIACTQPRRLAVQAVASRVAEEMGVKV 123 (660)
Q Consensus 49 lPi~~~~~~i~~~l~~--~~~vii~apTGsGKT~~ip~~l~~~---~~~~~~~~i~v~p~r~la~~~~~~~~~~~~~~~~ 123 (660)
..+...|++.+..+.. +++++|+|..|+||||++-.++... ....+..++.++|+-+.+. ++. +.|...
T Consensus 966 ~~Lt~~Q~~Av~~il~s~dr~~~I~G~AGTGKTT~l~~v~~~~~~l~~~~~~~V~glAPTgrAAk-----~L~-e~Gi~A 1039 (1747)
T PRK13709 966 EGLTSGQRAATRMILESTDRFTVVQGYAGVGKTTQFRAVMSAVNTLPESERPRVVGLGPTHRAVG-----EMR-SAGVDA 1039 (1747)
T ss_pred CCCCHHHHHHHHHHHhCCCcEEEEEeCCCCCHHHHHHHHHHHHHHhhcccCceEEEECCcHHHHH-----HHH-hcCcch
Confidence 3567777777777665 4799999999999998876544322 1112345777888865543 222 222210
Q ss_pred eeEEeeeeeccccCCCCCceEEEechHHHHHHH----hc-CCCCCCCcEEEEeCCCcCCcChhHHHHHHHHHHHhcCCce
Q 006122 124 GEEVGYTIRFEDFTNKDLTAIKFLTDGVLLREM----MD-DPLLTKYSVIMVDEAHERSISTDILLGLLKKIQRCRSDLR 198 (660)
Q Consensus 124 ~~~vg~~~~~~~~~~~~~~~I~v~T~~~ll~~l----~~-~~~l~~~~~iIiDE~Her~~~~d~ll~~l~~~~~~~~~~k 198 (660)
.|-..++... .+ +.....-++|||||+= +++...+..+++.+.. .+.|
T Consensus 1040 -----------------------~TI~s~L~~~~~~~~~~~~~~~~~~llIVDEaS--Mv~~~~m~~Ll~~~~~--~gar 1092 (1747)
T PRK13709 1040 -----------------------QTLASFLHDTQLQQRSGETPDFSNTLFLLDESS--MVGNTDMARAYALIAA--GGGR 1092 (1747)
T ss_pred -----------------------hhHHHHhcccccccccccCCCCCCcEEEEEccc--cccHHHHHHHHHhhhc--CCCE
Confidence 1222222111 00 1112345899999997 5666666666665532 3578
Q ss_pred EEEeecc
Q 006122 199 LIISSAT 205 (660)
Q Consensus 199 ii~~SAT 205 (660)
+|++.=+
T Consensus 1093 vVLVGD~ 1099 (1747)
T PRK13709 1093 AVSSGDT 1099 (1747)
T ss_pred EEEecch
Confidence 8877654
No 341
>PF05496 RuvB_N: Holliday junction DNA helicase ruvB N-terminus; InterPro: IPR008824 The RuvB protein makes up part of the RuvABC revolvasome which catalyses the resolution of Holliday junctions that arise during genetic recombination and DNA repair. Branch migration is catalysed by the RuvB protein that is targeted to the Holliday junction by the structure specific RuvA protein []. This group of sequences contain this signature which is located in the N-terminal region of the proteins.; GO: 0009378 four-way junction helicase activity, 0006281 DNA repair, 0006310 DNA recombination; PDB: 1IQP_B 3PFI_B 1IXR_C 1HQC_B 1IXS_B.
Probab=95.04 E-value=0.11 Score=50.26 Aligned_cols=24 Identities=29% Similarity=0.322 Sum_probs=19.3
Q ss_pred CEEEEEcCCCCcHHHHHHHHHHhc
Q 006122 66 ATTIIVGETGSGKTTQIPQYLKEA 89 (660)
Q Consensus 66 ~~vii~apTGsGKT~~ip~~l~~~ 89 (660)
+++++.||+|+||||++-.+..+.
T Consensus 51 ~h~lf~GPPG~GKTTLA~IIA~e~ 74 (233)
T PF05496_consen 51 DHMLFYGPPGLGKTTLARIIANEL 74 (233)
T ss_dssp -EEEEESSTTSSHHHHHHHHHHHC
T ss_pred ceEEEECCCccchhHHHHHHHhcc
Confidence 579999999999998877665554
No 342
>PHA02533 17 large terminase protein; Provisional
Probab=95.03 E-value=0.58 Score=52.03 Aligned_cols=155 Identities=14% Similarity=0.168 Sum_probs=81.8
Q ss_pred CCCcHHHHHHHHHHHhcCCEEEEEcCCCCcHHHHHHHHHH-hccccCCCeEEEEeCchHHHHHHHHHHHHHHhCC-----
Q 006122 48 RLPVYKYRTAILYLVETHATTIIVGETGSGKTTQIPQYLK-EAGWADGGRVIACTQPRRLAVQAVASRVAEEMGV----- 121 (660)
Q Consensus 48 ~lPi~~~~~~i~~~l~~~~~vii~apTGsGKT~~ip~~l~-~~~~~~~~~~i~v~p~r~la~~~~~~~~~~~~~~----- 121 (660)
.+++..+|+.++..+..++..++.-+=..|||+++..+++ .....++..++++++.++.+.. +.+++......
T Consensus 57 Pf~L~p~Q~~i~~~~~~~R~~ii~~aRq~GKStl~a~~al~~a~~~~~~~v~i~A~~~~QA~~-vF~~ik~~ie~~P~l~ 135 (534)
T PHA02533 57 KVQMRDYQKDMLKIMHKNRFNACNLSRQLGKTTVVAIFLLHYVCFNKDKNVGILAHKASMAAE-VLDRTKQAIELLPDFL 135 (534)
T ss_pred ecCCcHHHHHHHHHHhcCeEEEEEEcCcCChHHHHHHHHHHHHHhCCCCEEEEEeCCHHHHHH-HHHHHHHHHHhCHHHh
Confidence 5779999999999987777788888999999988775443 3333345566667777665544 33444322110
Q ss_pred eeeeEEe--eeeeccccCCCCCceEEEechHHHHHHHhcCCCCCCCcEEEEeCCCcCCcChhHHHHHHHHHHHhcCCceE
Q 006122 122 KVGEEVG--YTIRFEDFTNKDLTAIKFLTDGVLLREMMDDPLLTKYSVIMVDEAHERSISTDILLGLLKKIQRCRSDLRL 199 (660)
Q Consensus 122 ~~~~~vg--~~~~~~~~~~~~~~~I~v~T~~~ll~~l~~~~~l~~~~~iIiDE~Her~~~~d~ll~~l~~~~~~~~~~ki 199 (660)
..+.... ..+.+ .. ...|.+.|... +.. .=.+.+++|+||+|...-..++...+. -.+......++
T Consensus 136 ~~~i~~~~~~~I~l----~N-GS~I~~lss~~--~t~----rG~~~~~liiDE~a~~~~~~e~~~ai~-p~lasg~~~r~ 203 (534)
T PHA02533 136 QPGIVEWNKGSIEL----EN-GSKIGAYASSP--DAV----RGNSFAMIYIDECAFIPNFIDFWLAIQ-PVISSGRSSKI 203 (534)
T ss_pred hcceeecCccEEEe----CC-CCEEEEEeCCC--Ccc----CCCCCceEEEeccccCCCHHHHHHHHH-HHHHcCCCceE
Confidence 1010000 01111 12 35555554321 000 122457899999994322223333332 22333334566
Q ss_pred EEeecccchHHHHHHh
Q 006122 200 IISSATIEAKSMSAFF 215 (660)
Q Consensus 200 i~~SAT~~~~~~~~~~ 215 (660)
++.|..-....+-+.+
T Consensus 204 iiiSTp~G~n~fye~~ 219 (534)
T PHA02533 204 IITSTPNGLNHFYDIW 219 (534)
T ss_pred EEEECCCchhhHHHHH
Confidence 6666554333354444
No 343
>PRK14712 conjugal transfer nickase/helicase TraI; Provisional
Probab=95.00 E-value=0.21 Score=61.69 Aligned_cols=123 Identities=18% Similarity=0.188 Sum_probs=69.3
Q ss_pred CcHHHHHHHHHHHhc--CCEEEEEcCCCCcHHHHHHHHHHh---ccccCCCeEEEEeCchHHHHHHHHHHHHHHhCCeee
Q 006122 50 PVYKYRTAILYLVET--HATTIIVGETGSGKTTQIPQYLKE---AGWADGGRVIACTQPRRLAVQAVASRVAEEMGVKVG 124 (660)
Q Consensus 50 Pi~~~~~~i~~~l~~--~~~vii~apTGsGKT~~ip~~l~~---~~~~~~~~~i~v~p~r~la~~~~~~~~~~~~~~~~~ 124 (660)
.+..-|.+.+..+.. +++++|+|..|+||||++-.++.. .....+..++.++|+-+.+.. +. +.|+..
T Consensus 835 ~Lt~~Qr~Av~~iLts~dr~~~IqG~AGTGKTT~l~~i~~~~~~l~e~~g~~V~glAPTgkAa~~-----L~-e~Gi~A- 907 (1623)
T PRK14712 835 KLTSGQRAATRMILETSDRFTVVQGYAGVGKTTQFRAVMSAVNMLPESERPRVVGLGPTHRAVGE-----MR-SAGVDA- 907 (1623)
T ss_pred ccCHHHHHHHHHHHhCCCceEEEEeCCCCCHHHHHHHHHHHHHHHhhccCceEEEEechHHHHHH-----HH-HhCchH-
Confidence 466777777776653 589999999999999886544321 111234457778887544332 22 122211
Q ss_pred eEEeeeeeccccCCCCCceEEEechHHHHHH-----HhcCCCCCCCcEEEEeCCCcCCcChhHHHHHHHHHHHhcCCceE
Q 006122 125 EEVGYTIRFEDFTNKDLTAIKFLTDGVLLRE-----MMDDPLLTKYSVIMVDEAHERSISTDILLGLLKKIQRCRSDLRL 199 (660)
Q Consensus 125 ~~vg~~~~~~~~~~~~~~~I~v~T~~~ll~~-----l~~~~~l~~~~~iIiDE~Her~~~~d~ll~~l~~~~~~~~~~ki 199 (660)
.|-..|+.. ...+......++|||||+= +++...+..+++.+. ..+.|+
T Consensus 908 ----------------------~TIasfL~~~~~~~~~~~~~~~~~~llIVDEAS--MV~~~~m~~ll~~~~--~~garv 961 (1623)
T PRK14712 908 ----------------------QTLASFLHDTQLQQRSGETPDFSNTLFLLDESS--MVGNTDMARAYALIA--AGGGRA 961 (1623)
T ss_pred ----------------------hhHHHHhccccchhhcccCCCCCCcEEEEEccc--cccHHHHHHHHHhhh--hCCCEE
Confidence 111111111 0011112346899999997 566555555555443 235788
Q ss_pred EEeecc
Q 006122 200 IISSAT 205 (660)
Q Consensus 200 i~~SAT 205 (660)
|++.=+
T Consensus 962 VLVGD~ 967 (1623)
T PRK14712 962 VASGDT 967 (1623)
T ss_pred EEEcch
Confidence 887755
No 344
>COG3587 Restriction endonuclease [Defense mechanisms]
Probab=95.00 E-value=0.082 Score=59.52 Aligned_cols=52 Identities=15% Similarity=0.145 Sum_probs=39.2
Q ss_pred CcEEEEeCCCcccccCCCCeEEEEeCCCccceeecCCCCcccceeeecCHHhHHHhhcccCCC---CCcEEEE
Q 006122 335 KRKVVISTNIAETSLTLEGIVYVVDSGFSKQRFYNPISDIENLVVAPISKASARQRAGRAGRV---RPGKCYR 404 (660)
Q Consensus 335 ~~~vlvaT~i~e~Gidip~v~~VId~g~~k~~~~~~~~~~~~l~~~~~s~~~~~QR~GRaGR~---~~G~~~~ 404 (660)
.++.|++-.++-.|-|=|+|=.+.- ..+ .-|..+=.|.+||.-|. ..|.-++
T Consensus 483 plRFIFS~waLrEGWDNPNVFtIck--------L~~----------S~SeiSK~QeVGRGLRLaVNe~G~RV~ 537 (985)
T COG3587 483 PLRFIFSKWALREGWDNPNVFTICK--------LRS----------SGSEISKLQEVGRGLRLAVNENGERVT 537 (985)
T ss_pred cceeeeehhHHhhcCCCCCeeEEEE--------ecC----------CCcchHHHHHhccceeeeeccccceec
Confidence 5899999999999999999866653 111 33455667999999997 6675544
No 345
>COG4987 CydC ABC-type transport system involved in cytochrome bd biosynthesis, fused ATPase and permease components [Energy production and conversion / Posttranslational modification, protein turnover, chaperones]
Probab=95.00 E-value=0.08 Score=56.94 Aligned_cols=45 Identities=16% Similarity=0.209 Sum_probs=30.3
Q ss_pred CCCCCcEEEEeCCCcCCcChhHHHHHHHHHHHhcCCceEEEeeccc
Q 006122 161 LLTKYSVIMVDEAHERSISTDILLGLLKKIQRCRSDLRLIISSATI 206 (660)
Q Consensus 161 ~l~~~~~iIiDE~Her~~~~d~ll~~l~~~~~~~~~~kii~~SAT~ 206 (660)
+|++-.++++||--| ++|...-..++..+...-.+.-+++.|=-+
T Consensus 489 LL~dapl~lLDEPTe-gLD~~TE~~vL~ll~~~~~~kTll~vTHrL 533 (573)
T COG4987 489 LLHDAPLWLLDEPTE-GLDPITERQVLALLFEHAEGKTLLMVTHRL 533 (573)
T ss_pred HHcCCCeEEecCCcc-cCChhhHHHHHHHHHHHhcCCeEEEEeccc
Confidence 467788999999884 666666666666666555555566655443
No 346
>PRK00440 rfc replication factor C small subunit; Reviewed
Probab=94.98 E-value=0.38 Score=49.92 Aligned_cols=24 Identities=29% Similarity=0.447 Sum_probs=18.9
Q ss_pred CEEEEEcCCCCcHHHHHHHHHHhc
Q 006122 66 ATTIIVGETGSGKTTQIPQYLKEA 89 (660)
Q Consensus 66 ~~vii~apTGsGKT~~ip~~l~~~ 89 (660)
.++++.||+|+|||+.+-.+....
T Consensus 39 ~~~ll~G~~G~GKt~~~~~l~~~l 62 (319)
T PRK00440 39 PHLLFAGPPGTGKTTAALALAREL 62 (319)
T ss_pred CeEEEECCCCCCHHHHHHHHHHHH
Confidence 368999999999998876655443
No 347
>PRK08533 flagellar accessory protein FlaH; Reviewed
Probab=94.97 E-value=0.15 Score=50.25 Aligned_cols=40 Identities=15% Similarity=0.170 Sum_probs=29.9
Q ss_pred HhcCCEEEEEcCCCCcHHHHHHHHHHhccccCCCeEEEEeC
Q 006122 62 VETHATTIIVGETGSGKTTQIPQYLKEAGWADGGRVIACTQ 102 (660)
Q Consensus 62 l~~~~~vii~apTGsGKT~~ip~~l~~~~~~~~~~~i~v~p 102 (660)
+..+..+++.|++|+|||++.-+++.... .++.++++++.
T Consensus 21 i~~g~~~~i~G~~G~GKTtl~~~~~~~~~-~~g~~~~yi~~ 60 (230)
T PRK08533 21 IPAGSLILIEGDESTGKSILSQRLAYGFL-QNGYSVSYVST 60 (230)
T ss_pred CCCCcEEEEECCCCCCHHHHHHHHHHHHH-hCCCcEEEEeC
Confidence 45678999999999999988777776542 24456676664
No 348
>cd03239 ABC_SMC_head The structural maintenance of chromosomes (SMC) proteins are essential for successful chromosome transmission during replication and segregation of the genome in all organisms. SMCs are generally present as single proteins in bacteria, and as at least six distinct proteins in eukaryotes. The proteins range in size from approximately 110 to 170 kDa, and each has five distinct domains: amino- and carboxy-terminal globular domains, which contain sequences characteristic of ATPases, two coiled-coil regions separating the terminal domains , and a central flexible hinge. SMC proteins function together with other proteins in a range of chromosomal transactions, including chromosome condensation, sister-chromatid cohesion, recombination, DNA repair, and epigenetic silencing of gene expression.
Probab=94.91 E-value=0.16 Score=47.89 Aligned_cols=42 Identities=10% Similarity=0.141 Sum_probs=26.8
Q ss_pred CCCCcEEEEeCCCcCCcChhHHHHHHHHHHHhcC-CceEEEeec
Q 006122 162 LTKYSVIMVDEAHERSISTDILLGLLKKIQRCRS-DLRLIISSA 204 (660)
Q Consensus 162 l~~~~~iIiDE~Her~~~~d~ll~~l~~~~~~~~-~~kii~~SA 204 (660)
+.+.+++++||.. .+++......+.+.+..... +..+|+.|-
T Consensus 114 ~~~p~llilDEp~-~~LD~~~~~~i~~~L~~~~~~g~tiIiiSH 156 (178)
T cd03239 114 IKPSPFYVLDEID-AALDPTNRRRVSDMIKEMAKHTSQFIVITL 156 (178)
T ss_pred CCCCCEEEEECCC-CCCCHHHHHHHHHHHHHHHhCCCEEEEEEC
Confidence 3567999999999 67777666555555544322 355555544
No 349
>PRK13900 type IV secretion system ATPase VirB11; Provisional
Probab=94.88 E-value=0.054 Score=56.41 Aligned_cols=31 Identities=35% Similarity=0.336 Sum_probs=24.5
Q ss_pred HHHHhcCCEEEEEcCCCCcHHHHHHHHHHhc
Q 006122 59 LYLVETHATTIIVGETGSGKTTQIPQYLKEA 89 (660)
Q Consensus 59 ~~~l~~~~~vii~apTGsGKT~~ip~~l~~~ 89 (660)
..++..+.+++|+|+|||||||++-.++...
T Consensus 154 ~~~v~~~~nili~G~tgSGKTTll~aL~~~i 184 (332)
T PRK13900 154 EHAVISKKNIIISGGTSTGKTTFTNAALREI 184 (332)
T ss_pred HHHHHcCCcEEEECCCCCCHHHHHHHHHhhC
Confidence 3456778899999999999999987655433
No 350
>COG1121 ZnuC ABC-type Mn/Zn transport systems, ATPase component [Inorganic ion transport and metabolism]
Probab=94.86 E-value=0.075 Score=52.44 Aligned_cols=70 Identities=14% Similarity=0.245 Sum_probs=43.6
Q ss_pred EechHHHHHHHhcCCCCCCCcEEEEeCCCcCCcChhHHHHHHHHHHHhcCCceEEEeecccchHHHHHHhhc
Q 006122 146 FLTDGVLLREMMDDPLLTKYSVIMVDEAHERSISTDILLGLLKKIQRCRSDLRLIISSATIEAKSMSAFFHA 217 (660)
Q Consensus 146 v~T~~~ll~~l~~~~~l~~~~~iIiDE~Her~~~~d~ll~~l~~~~~~~~~~kii~~SAT~~~~~~~~~~~~ 217 (660)
=.+=|..-|.+....+.++-+++++||== -++|......++..+...+..=+.|+| -|-|.....+|++.
T Consensus 139 ~LSGGQ~QRV~lARAL~~~p~lllLDEP~-~gvD~~~~~~i~~lL~~l~~eg~tIl~-vtHDL~~v~~~~D~ 208 (254)
T COG1121 139 ELSGGQKQRVLLARALAQNPDLLLLDEPF-TGVDVAGQKEIYDLLKELRQEGKTVLM-VTHDLGLVMAYFDR 208 (254)
T ss_pred ccCcHHHHHHHHHHHhccCCCEEEecCCc-ccCCHHHHHHHHHHHHHHHHCCCEEEE-EeCCcHHhHhhCCE
Confidence 33445556665555567788999999976 466665555555555444444334443 36677888888765
No 351
>cd03213 ABCG_EPDR ABCG transporters are involved in eye pigment (EP) precursor transport, regulation of lipid-trafficking mechanisms, and pleiotropic drug resistance (DR). DR is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. Compared to other members of the ABC transporter subfamilies, the ABCG transporter family is composed of proteins that have an ATP-binding cassette domain at the N-terminus and a TM (transmembrane) domain at the C-terminus.
Probab=94.85 E-value=0.093 Score=50.31 Aligned_cols=27 Identities=26% Similarity=0.412 Sum_probs=22.6
Q ss_pred HhcCCEEEEEcCCCCcHHHHHHHHHHh
Q 006122 62 VETHATTIIVGETGSGKTTQIPQYLKE 88 (660)
Q Consensus 62 l~~~~~vii~apTGsGKT~~ip~~l~~ 88 (660)
+..++.+.|.||.||||||++-.+.-.
T Consensus 32 i~~Ge~~~l~G~nGsGKStLl~~i~Gl 58 (194)
T cd03213 32 AKPGELTAIMGPSGAGKSTLLNALAGR 58 (194)
T ss_pred EcCCcEEEEECCCCCCHHHHHHHHhCC
Confidence 467899999999999999988766543
No 352
>PRK05563 DNA polymerase III subunits gamma and tau; Validated
Probab=94.82 E-value=0.12 Score=57.85 Aligned_cols=39 Identities=31% Similarity=0.481 Sum_probs=26.0
Q ss_pred HHHHHhcCCCCCCCcEEEEeCCCcCCcChhHHHHHHHHHHH
Q 006122 152 LLREMMDDPLLTKYSVIMVDEAHERSISTDILLGLLKKIQR 192 (660)
Q Consensus 152 ll~~l~~~~~l~~~~~iIiDE~Her~~~~d~ll~~l~~~~~ 192 (660)
+.......|...++.++||||+|. +..+....+++.+..
T Consensus 107 i~~~v~~~p~~~~~kViIIDE~~~--Lt~~a~naLLKtLEe 145 (559)
T PRK05563 107 IRDKVKYAPSEAKYKVYIIDEVHM--LSTGAFNALLKTLEE 145 (559)
T ss_pred HHHHHhhCcccCCeEEEEEECccc--CCHHHHHHHHHHhcC
Confidence 344444456678899999999994 344556666666543
No 353
>TIGR02397 dnaX_nterm DNA polymerase III, subunit gamma and tau. This model represents the well-conserved first ~ 365 amino acids of the translation of the dnaX gene. The full-length product of the dnaX gene in the model bacterium E. coli is the DNA polymerase III tau subunit. A translational frameshift leads to early termination and a truncated protein subunit gamma, about 1/3 shorter than tau and present in roughly equal amounts. This frameshift mechanism is not necessarily universal for species with DNA polymerase III but appears conserved in the exterme thermophile Thermus thermophilis.
Probab=94.77 E-value=0.23 Score=52.54 Aligned_cols=49 Identities=27% Similarity=0.426 Sum_probs=29.5
Q ss_pred HHHHHHhcCCCCCCCcEEEEeCCCcCCcChhHHHHHHHHHHHhcCCceEEE
Q 006122 151 VLLREMMDDPLLTKYSVIMVDEAHERSISTDILLGLLKKIQRCRSDLRLII 201 (660)
Q Consensus 151 ~ll~~l~~~~~l~~~~~iIiDE~Her~~~~d~ll~~l~~~~~~~~~~kii~ 201 (660)
.+...+...+...+..+|||||+|. +..+....+++.+....++..+|+
T Consensus 104 ~l~~~~~~~p~~~~~~vviidea~~--l~~~~~~~Ll~~le~~~~~~~lIl 152 (355)
T TIGR02397 104 EILDNVKYAPSSGKYKVYIIDEVHM--LSKSAFNALLKTLEEPPEHVVFIL 152 (355)
T ss_pred HHHHHHhcCcccCCceEEEEeChhh--cCHHHHHHHHHHHhCCccceeEEE
Confidence 3555555566778889999999994 233445555665543333343444
No 354
>TIGR02524 dot_icm_DotB Dot/Icm secretion system ATPase DotB. Members of this protein family are the DotB component of Dot/Icm secretion systems, as found in obligate intracellular pathogens Legionella pneumophila and Coxiella burnetii. While this system resembles type IV secretion systems and has been called a form of type IV, the liturature now seems to favor calling this the Dot/Icm system. This family is most closely related to TraJ proteins of plasmid transfer, rather than to proteins of other type IV secretion systems.
Probab=94.77 E-value=0.053 Score=57.09 Aligned_cols=31 Identities=32% Similarity=0.566 Sum_probs=23.9
Q ss_pred HHHHHh-cCCEEEEEcCCCCcHHHHHHHHHHh
Q 006122 58 ILYLVE-THATTIIVGETGSGKTTQIPQYLKE 88 (660)
Q Consensus 58 i~~~l~-~~~~vii~apTGsGKT~~ip~~l~~ 88 (660)
+.+.+. .+..++|+|||||||||.+-.++..
T Consensus 126 ~~~~~~~~~glilI~GpTGSGKTTtL~aLl~~ 157 (358)
T TIGR02524 126 IIDAIAPQEGIVFITGATGSGKSTLLAAIIRE 157 (358)
T ss_pred HHHHHhccCCEEEEECCCCCCHHHHHHHHHHH
Confidence 444444 6789999999999999888766544
No 355
>PRK14954 DNA polymerase III subunits gamma and tau; Provisional
Probab=94.77 E-value=0.14 Score=57.78 Aligned_cols=48 Identities=23% Similarity=0.350 Sum_probs=29.2
Q ss_pred HHHhcCCCCCCCcEEEEeCCCcCCcChhHHHHHHHHHHHhcCCceEEEee
Q 006122 154 REMMDDPLLTKYSVIMVDEAHERSISTDILLGLLKKIQRCRSDLRLIISS 203 (660)
Q Consensus 154 ~~l~~~~~l~~~~~iIiDE~Her~~~~d~ll~~l~~~~~~~~~~kii~~S 203 (660)
..+...|...+..+|||||+|.. ...-...+++.+..-.+...+|+++
T Consensus 117 e~~~~~P~~~~~KVvIIdEad~L--t~~a~naLLK~LEePp~~tv~IL~t 164 (620)
T PRK14954 117 ENVRYGPQKGRYRVYIIDEVHML--STAAFNAFLKTLEEPPPHAIFIFAT 164 (620)
T ss_pred HHHHhhhhcCCCEEEEEeChhhc--CHHHHHHHHHHHhCCCCCeEEEEEe
Confidence 33444567788999999999943 3334455555554444444455544
No 356
>TIGR01420 pilT_fam pilus retraction protein PilT. This model represents the PilT subfamily of proteins related to GspE, a protein involved in type II secretion (also called the General Secretion Pathway). PilT is an apparent cytosolic ATPase associated with type IV pilus systems. It is not required for pilin biogenesis, but is required for twitching motility and social gliding behaviors, shown in some species, powered by pilus retraction. Members of this family may be found in some species that type IV pili but have related structures for DNA uptake and natural transformation.
Probab=94.76 E-value=0.049 Score=57.25 Aligned_cols=48 Identities=25% Similarity=0.431 Sum_probs=30.4
Q ss_pred HHHHHh-cCCEEEEEcCCCCcHHHHHHHHHHhccccCCCeEEEEeCchH
Q 006122 58 ILYLVE-THATTIIVGETGSGKTTQIPQYLKEAGWADGGRVIACTQPRR 105 (660)
Q Consensus 58 i~~~l~-~~~~vii~apTGsGKT~~ip~~l~~~~~~~~~~~i~v~p~r~ 105 (660)
+.+.+. .+..++|+|||||||||.+-.++.......+.+++.+-.|.+
T Consensus 114 l~~~~~~~~g~ili~G~tGSGKTT~l~al~~~i~~~~~~~i~tiEdp~E 162 (343)
T TIGR01420 114 LRELAERPRGLILVTGPTGSGKSTTLASMIDYINKNAAGHIITIEDPIE 162 (343)
T ss_pred HHHHHhhcCcEEEEECCCCCCHHHHHHHHHHhhCcCCCCEEEEEcCChh
Confidence 334443 467899999999999998876655432222344555555543
No 357
>PRK14970 DNA polymerase III subunits gamma and tau; Provisional
Probab=94.72 E-value=0.16 Score=54.02 Aligned_cols=33 Identities=24% Similarity=0.395 Sum_probs=23.7
Q ss_pred HHHHHHHhcCC---EEEEEcCCCCcHHHHHHHHHHh
Q 006122 56 TAILYLVETHA---TTIIVGETGSGKTTQIPQYLKE 88 (660)
Q Consensus 56 ~~i~~~l~~~~---~vii~apTGsGKT~~ip~~l~~ 88 (660)
+.+...+..++ .+++.||.|+|||+.+-.+...
T Consensus 27 ~~l~~~i~~~~~~~~~L~~G~~G~GKt~~a~~la~~ 62 (367)
T PRK14970 27 NTLLNAIENNHLAQALLFCGPRGVGKTTCARILARK 62 (367)
T ss_pred HHHHHHHHcCCCCeEEEEECCCCCCHHHHHHHHHHH
Confidence 34555555543 6889999999999887766443
No 358
>COG2812 DnaX DNA polymerase III, gamma/tau subunits [DNA replication, recombination, and repair]
Probab=94.70 E-value=0.048 Score=59.45 Aligned_cols=54 Identities=26% Similarity=0.405 Sum_probs=38.5
Q ss_pred HHHHHHhcCCCCCCCcEEEEeCCCcCCcChhHHHHHHHHHHHhcCCceEEEeecccch
Q 006122 151 VLLREMMDDPLLTKYSVIMVDEAHERSISTDILLGLLKKIQRCRSDLRLIISSATIEA 208 (660)
Q Consensus 151 ~ll~~l~~~~~l~~~~~iIiDE~Her~~~~d~ll~~l~~~~~~~~~~kii~~SAT~~~ 208 (660)
.+.....-.|.-.++.+.||||+| ++.+....+++|.+..-.+.+.+ .=||-+.
T Consensus 106 ~i~e~v~y~P~~~ryKVyiIDEvH--MLS~~afNALLKTLEEPP~hV~F--IlATTe~ 159 (515)
T COG2812 106 EIIEKVNYAPSEGRYKVYIIDEVH--MLSKQAFNALLKTLEEPPSHVKF--ILATTEP 159 (515)
T ss_pred HHHHHhccCCccccceEEEEecHH--hhhHHHHHHHhcccccCccCeEE--EEecCCc
Confidence 455555666778999999999999 56777888888887655555444 4466543
No 359
>cd03215 ABC_Carb_Monos_II This family represents domain II of the carbohydrate uptake proteins that transport only monosaccharides (Monos). The Carb_Monos family is involved in the uptake of monosaccharides, such as pentoses (such as xylose, arabinose, and ribose) and hexoses (such as xylose, arabinose, and ribose), that cannot be broken down to simple sugars by hydrolysis. In members of Carb_Monos family the single hydrophobic gene product forms a homodimer, while the ABC protein represents a fusion of two nucleotide-binding domains. However, it is assumed that two copies of the ABC domains are present in the assembled transporter.
Probab=94.70 E-value=0.14 Score=48.53 Aligned_cols=28 Identities=21% Similarity=0.218 Sum_probs=22.7
Q ss_pred HhcCCEEEEEcCCCCcHHHHHHHHHHhc
Q 006122 62 VETHATTIIVGETGSGKTTQIPQYLKEA 89 (660)
Q Consensus 62 l~~~~~vii~apTGsGKT~~ip~~l~~~ 89 (660)
+..++.+.|.||.||||||++-.+.-..
T Consensus 23 i~~G~~~~i~G~nGsGKSTLl~~l~G~~ 50 (182)
T cd03215 23 VRAGEIVGIAGLVGNGQTELAEALFGLR 50 (182)
T ss_pred EcCCcEEEEECCCCCCHHHHHHHHhCCC
Confidence 3578899999999999999887665443
No 360
>PRK04195 replication factor C large subunit; Provisional
Probab=94.68 E-value=0.39 Score=53.09 Aligned_cols=25 Identities=20% Similarity=0.348 Sum_probs=21.2
Q ss_pred CCEEEEEcCCCCcHHHHHHHHHHhc
Q 006122 65 HATTIIVGETGSGKTTQIPQYLKEA 89 (660)
Q Consensus 65 ~~~vii~apTGsGKT~~ip~~l~~~ 89 (660)
.+.+++.||+|+|||+++-.+..+.
T Consensus 39 ~~~lLL~GppG~GKTtla~ala~el 63 (482)
T PRK04195 39 KKALLLYGPPGVGKTSLAHALANDY 63 (482)
T ss_pred CCeEEEECCCCCCHHHHHHHHHHHc
Confidence 5689999999999998887776655
No 361
>TIGR03375 type_I_sec_LssB type I secretion system ATPase, LssB family. Type I protein secretion is a system in some Gram-negative bacteria to export proteins (often proteases) across both inner and outer membranes to the extracellular medium. This is one of three proteins of the type I secretion apparatus. Targeted proteins are not cleaved at the N-terminus, but rather carry signals located toward the extreme C-terminus to direct type I secretion. This model is related to models TIGR01842 and TIGR01846, and to bacteriocin ABC transporters that cleave their substrates during export.
Probab=94.63 E-value=0.067 Score=62.18 Aligned_cols=55 Identities=13% Similarity=0.247 Sum_probs=33.3
Q ss_pred chHHHHHHHhcCCCCCCCcEEEEeCCCcCCcChhHHHHHHHHHHHhcCCceEEEee
Q 006122 148 TDGVLLREMMDDPLLTKYSVIMVDEAHERSISTDILLGLLKKIQRCRSDLRLIISS 203 (660)
Q Consensus 148 T~~~ll~~l~~~~~l~~~~~iIiDE~Her~~~~d~ll~~l~~~~~~~~~~kii~~S 203 (660)
+-|.-.+......++.+.+++|+||+= -.+|...-..+.+.+....++..+|+.|
T Consensus 603 SgGQrQRlalARall~~p~iliLDE~T-s~LD~~te~~i~~~l~~~~~~~T~iiIt 657 (694)
T TIGR03375 603 SGGQRQAVALARALLRDPPILLLDEPT-SAMDNRSEERFKDRLKRWLAGKTLVLVT 657 (694)
T ss_pred CHHHHHHHHHHHHHhcCCCEEEEeCCC-CCCCHHHHHHHHHHHHHHhCCCEEEEEe
Confidence 334444433333456778999999987 4567666666666666555554444444
No 362
>PRK06647 DNA polymerase III subunits gamma and tau; Validated
Probab=94.59 E-value=0.14 Score=57.26 Aligned_cols=33 Identities=21% Similarity=0.352 Sum_probs=23.4
Q ss_pred HHHHHHhcCC---EEEEEcCCCCcHHHHHHHHHHhc
Q 006122 57 AILYLVETHA---TTIIVGETGSGKTTQIPQYLKEA 89 (660)
Q Consensus 57 ~i~~~l~~~~---~vii~apTGsGKT~~ip~~l~~~ 89 (660)
.+..++.+++ .+++.||.|+|||+.+-.+....
T Consensus 27 ~L~~~i~~~~i~hayLf~Gp~G~GKTt~Ar~lAk~L 62 (563)
T PRK06647 27 TLKHSIESNKIANAYIFSGPRGVGKTSSARAFARCL 62 (563)
T ss_pred HHHHHHHcCCCCeEEEEECCCCCCHHHHHHHHHHhh
Confidence 3455555543 47899999999998877665544
No 363
>PHA00729 NTP-binding motif containing protein
Probab=94.57 E-value=0.12 Score=50.22 Aligned_cols=31 Identities=29% Similarity=0.483 Sum_probs=22.2
Q ss_pred HHHHHhcC--CEEEEEcCCCCcHHHHHHHHHHh
Q 006122 58 ILYLVETH--ATTIIVGETGSGKTTQIPQYLKE 88 (660)
Q Consensus 58 i~~~l~~~--~~vii~apTGsGKT~~ip~~l~~ 88 (660)
+++.+.++ .+++|.|++|+|||++.-.+...
T Consensus 8 ~~~~l~~~~f~nIlItG~pGvGKT~LA~aLa~~ 40 (226)
T PHA00729 8 IVSAYNNNGFVSAVIFGKQGSGKTTYALKVARD 40 (226)
T ss_pred HHHHHhcCCeEEEEEECCCCCCHHHHHHHHHHH
Confidence 44445443 36999999999999887665543
No 364
>COG0470 HolB ATPase involved in DNA replication [DNA replication, recombination, and repair]
Probab=94.56 E-value=0.17 Score=52.65 Aligned_cols=53 Identities=26% Similarity=0.421 Sum_probs=34.2
Q ss_pred hHHHHHHHhcCCCCCCCcEEEEeCCCcCCcChhHHHHHHHHHHHhcCCceEEEee
Q 006122 149 DGVLLREMMDDPLLTKYSVIMVDEAHERSISTDILLGLLKKIQRCRSDLRLIISS 203 (660)
Q Consensus 149 ~~~ll~~l~~~~~l~~~~~iIiDE~Her~~~~d~ll~~l~~~~~~~~~~kii~~S 203 (660)
...+.+.....+....+.+||||||+ .+..+....+++.+.....+..+|+.+
T Consensus 94 vr~~~~~~~~~~~~~~~kviiidead--~mt~~A~nallk~lEep~~~~~~il~~ 146 (325)
T COG0470 94 VRELAEFLSESPLEGGYKVVIIDEAD--KLTEDAANALLKTLEEPPKNTRFILIT 146 (325)
T ss_pred HHHHHHHhccCCCCCCceEEEeCcHH--HHhHHHHHHHHHHhccCCCCeEEEEEc
Confidence 34444444444446789999999999 345566677777766555566665555
No 365
>cd03369 ABCC_NFT1 Domain 2 of NFT1 (New full-length MRP-type transporter 1). NFT1 belongs to the MRP (mulrtidrug resisitance-associated protein) family of ABC transporters. Some of the MRP members have five additional transmembrane segments in their N-terminas, but the function of these additional membrane-spanning domains is not clear. The MRP was found in the multidrug-resisting lung cancer cell in which p-glycoprotein was not overexpressed. MRP exports glutathione by drug stimulation, as well as, certain substrates in conjugated forms with anions such as glutathione, glucuronate, and sulfate.
Probab=94.53 E-value=0.066 Score=51.88 Aligned_cols=27 Identities=37% Similarity=0.469 Sum_probs=22.4
Q ss_pred HhcCCEEEEEcCCCCcHHHHHHHHHHh
Q 006122 62 VETHATTIIVGETGSGKTTQIPQYLKE 88 (660)
Q Consensus 62 l~~~~~vii~apTGsGKT~~ip~~l~~ 88 (660)
+..++.+.|.|+.||||||++-.+.-.
T Consensus 31 i~~G~~~~i~G~nGsGKSTLl~~l~Gl 57 (207)
T cd03369 31 VKAGEKIGIVGRTGAGKSTLILALFRF 57 (207)
T ss_pred ECCCCEEEEECCCCCCHHHHHHHHhcc
Confidence 357899999999999999998766543
No 366
>PRK14953 DNA polymerase III subunits gamma and tau; Provisional
Probab=94.49 E-value=0.2 Score=55.16 Aligned_cols=49 Identities=27% Similarity=0.433 Sum_probs=29.5
Q ss_pred HHHHHHhcCCCCCCCcEEEEeCCCcCCcChhHHHHHHHHHHHhcCCceEEE
Q 006122 151 VLLREMMDDPLLTKYSVIMVDEAHERSISTDILLGLLKKIQRCRSDLRLII 201 (660)
Q Consensus 151 ~ll~~l~~~~~l~~~~~iIiDE~Her~~~~d~ll~~l~~~~~~~~~~kii~ 201 (660)
.+...+...|...++.++||||+|. +..+....+++.+....+...+|+
T Consensus 106 ~I~~~~~~~P~~~~~KVvIIDEad~--Lt~~a~naLLk~LEepp~~~v~Il 154 (486)
T PRK14953 106 ALRDAVSYTPIKGKYKVYIIDEAHM--LTKEAFNALLKTLEEPPPRTIFIL 154 (486)
T ss_pred HHHHHHHhCcccCCeeEEEEEChhh--cCHHHHHHHHHHHhcCCCCeEEEE
Confidence 3444555566778899999999993 344445555555544333433333
No 367
>KOG0780 consensus Signal recognition particle, subunit Srp54 [Intracellular trafficking, secretion, and vesicular transport]
Probab=94.48 E-value=0.32 Score=50.18 Aligned_cols=136 Identities=18% Similarity=0.193 Sum_probs=85.0
Q ss_pred CCEEEEEcCCCCcHHHHHHHHHHhccccCCCeEEEEeCchHHHHHHHHHHHHHHhCCeeeeEEeeeeeccccCCCCCceE
Q 006122 65 HATTIIVGETGSGKTTQIPQYLKEAGWADGGRVIACTQPRRLAVQAVASRVAEEMGVKVGEEVGYTIRFEDFTNKDLTAI 144 (660)
Q Consensus 65 ~~~vii~apTGsGKT~~ip~~l~~~~~~~~~~~i~v~p~r~la~~~~~~~~~~~~~~~~~~~vg~~~~~~~~~~~~~~~I 144 (660)
..++.++|=-|+||||....+.+......-...++|.-+-|..|-...+..+...++.+.. .|. .
T Consensus 101 psVimfVGLqG~GKTTtc~KlA~y~kkkG~K~~LvcaDTFRagAfDQLkqnA~k~~iP~yg--syt------------e- 165 (483)
T KOG0780|consen 101 PSVIMFVGLQGSGKTTTCTKLAYYYKKKGYKVALVCADTFRAGAFDQLKQNATKARVPFYG--SYT------------E- 165 (483)
T ss_pred CcEEEEEeccCCCcceeHHHHHHHHHhcCCceeEEeecccccchHHHHHHHhHhhCCeeEe--ccc------------c-
Confidence 3578889999999998888777665433334568899888887775555445544444321 110 0
Q ss_pred EEechHHHHHHHhcCCCCCCCcEEEEeCCCcCCcChhHHHHHHHHHHHhcCCceEEEeeccc--chHHHHHHhhc
Q 006122 145 KFLTDGVLLREMMDDPLLTKYSVIMVDEAHERSISTDILLGLLKKIQRCRSDLRLIISSATI--EAKSMSAFFHA 217 (660)
Q Consensus 145 ~v~T~~~ll~~l~~~~~l~~~~~iIiDE~Her~~~~d~ll~~l~~~~~~~~~~kii~~SAT~--~~~~~~~~~~~ 217 (660)
+-|-.+...-.....-.++++||+|-.-....+..++..+........|+.-+..|-|++ ..+..+.-|..
T Consensus 166 --~dpv~ia~egv~~fKke~fdvIIvDTSGRh~qe~sLfeEM~~v~~ai~Pd~vi~VmDasiGQaae~Qa~aFk~ 238 (483)
T KOG0780|consen 166 --ADPVKIASEGVDRFKKENFDVIIVDTSGRHKQEASLFEEMKQVSKAIKPDEIIFVMDASIGQAAEAQARAFKE 238 (483)
T ss_pred --cchHHHHHHHHHHHHhcCCcEEEEeCCCchhhhHHHHHHHHHHHhhcCCCeEEEEEeccccHhHHHHHHHHHH
Confidence 112222222222222468999999998833355556655555555577888888999998 55666666654
No 368
>cd01393 recA_like RecA is a bacterial enzyme which has roles in homologous recombination, DNA repair, and the induction of the SOS response. RecA couples ATP hydrolysis to DNA strand exchange. While prokaryotes have a single RecA protein, eukaryotes have multiple RecA homologs such as Rad51, DMC1 and Rad55/57. Archaea have the RecA-like homologs radA and radB.
Probab=94.44 E-value=0.11 Score=51.19 Aligned_cols=43 Identities=35% Similarity=0.352 Sum_probs=30.6
Q ss_pred HhcCCEEEEEcCCCCcHHHHHHHHHHhccccC-----CCeEEEEeCch
Q 006122 62 VETHATTIIVGETGSGKTTQIPQYLKEAGWAD-----GGRVIACTQPR 104 (660)
Q Consensus 62 l~~~~~vii~apTGsGKT~~ip~~l~~~~~~~-----~~~~i~v~p~r 104 (660)
+..++++.|.||+|+|||+++-+++....... +.+++++....
T Consensus 16 ~~~g~v~~I~G~~GsGKT~l~~~ia~~~~~~~~~~g~~~~v~yi~~e~ 63 (226)
T cd01393 16 IPTGRITEIFGEFGSGKTQLCLQLAVEAQLPGELGGLEGKVVYIDTEG 63 (226)
T ss_pred CcCCcEEEEeCCCCCChhHHHHHHHHHhhcccccCCCcceEEEEecCC
Confidence 44578999999999999988877776543222 15667776543
No 369
>TIGR02858 spore_III_AA stage III sporulation protein AA. Members of this protein are the stage III sporulation protein AA, encoded by one of several genes in the spoIIIA locus. It seems that this protein is found in a species if and only if that species is capable of endospore formation.
Probab=94.43 E-value=0.5 Score=47.66 Aligned_cols=24 Identities=25% Similarity=0.340 Sum_probs=20.3
Q ss_pred CEEEEEcCCCCcHHHHHHHHHHhc
Q 006122 66 ATTIIVGETGSGKTTQIPQYLKEA 89 (660)
Q Consensus 66 ~~vii~apTGsGKT~~ip~~l~~~ 89 (660)
+++++.|||||||||++-.+....
T Consensus 112 ~~~~i~g~~g~GKttl~~~l~~~~ 135 (270)
T TIGR02858 112 LNTLIISPPQCGKTTLLRDLARIL 135 (270)
T ss_pred eEEEEEcCCCCCHHHHHHHHhCcc
Confidence 589999999999999988766544
No 370
>COG2805 PilT Tfp pilus assembly protein, pilus retraction ATPase PilT [Cell motility and secretion / Intracellular trafficking and secretion]
Probab=94.42 E-value=0.076 Score=52.98 Aligned_cols=44 Identities=18% Similarity=0.361 Sum_probs=28.2
Q ss_pred cCCEEEEEcCCCCcHHHHHHHHHHhccccCCCeEEEEeCchHHH
Q 006122 64 THATTIIVGETGSGKTTQIPQYLKEAGWADGGRVIACTQPRRLA 107 (660)
Q Consensus 64 ~~~~vii~apTGsGKT~~ip~~l~~~~~~~~~~~i~v~p~r~la 107 (660)
....++|+|||||||||.+..++-.........+|-+--|.+..
T Consensus 124 ~~GLILVTGpTGSGKSTTlAamId~iN~~~~~HIlTIEDPIE~v 167 (353)
T COG2805 124 PRGLILVTGPTGSGKSTTLAAMIDYINKHKAKHILTIEDPIEYV 167 (353)
T ss_pred CCceEEEeCCCCCcHHHHHHHHHHHHhccCCcceEEecCchHhh
Confidence 35679999999999997777666554333334444444454443
No 371
>PF01443 Viral_helicase1: Viral (Superfamily 1) RNA helicase; InterPro: IPR000606 This entry includes RNA and DNA helicases. Some of the members are found in positive-strand single stranded RNA viruses. The helicase has multiple roles at different stages of viral RNA replication, as dissected by mutational analysis [].; GO: 0004386 helicase activity
Probab=94.42 E-value=0.042 Score=54.32 Aligned_cols=22 Identities=41% Similarity=0.661 Sum_probs=18.3
Q ss_pred EEEEcCCCCcHHHHHHHHHHhc
Q 006122 68 TIIVGETGSGKTTQIPQYLKEA 89 (660)
Q Consensus 68 vii~apTGsGKT~~ip~~l~~~ 89 (660)
++|.|+.|||||+.+-.++...
T Consensus 1 ~vv~G~pGsGKSt~i~~~~~~~ 22 (234)
T PF01443_consen 1 IVVHGVPGSGKSTLIKKLLKDR 22 (234)
T ss_pred CEEEcCCCCCHHHHHHHHHHhc
Confidence 4799999999999888776654
No 372
>COG1435 Tdk Thymidine kinase [Nucleotide transport and metabolism]
Probab=94.38 E-value=0.14 Score=47.94 Aligned_cols=88 Identities=22% Similarity=0.237 Sum_probs=52.7
Q ss_pred CCEEEEEcCCCCcHHHHHHHHHHhccccCCCeEEEEeCchHHHHHHHHHHHHHHhCC-eeeeEEeeeeeccccCCCCCce
Q 006122 65 HATTIIVGETGSGKTTQIPQYLKEAGWADGGRVIACTQPRRLAVQAVASRVAEEMGV-KVGEEVGYTIRFEDFTNKDLTA 143 (660)
Q Consensus 65 ~~~vii~apTGsGKT~~ip~~l~~~~~~~~~~~i~v~p~r~la~~~~~~~~~~~~~~-~~~~~vg~~~~~~~~~~~~~~~ 143 (660)
++..++.||..||||+-+-+.+..... .+.++++..|-..- ..+. .+..-.| .. ..-
T Consensus 4 g~l~~i~gpM~SGKT~eLl~r~~~~~~-~g~~v~vfkp~iD~-----------R~~~~~V~Sr~G---------~~-~~A 61 (201)
T COG1435 4 GWLEFIYGPMFSGKTEELLRRARRYKE-AGMKVLVFKPAIDT-----------RYGVGKVSSRIG---------LS-SEA 61 (201)
T ss_pred EEEEEEEccCcCcchHHHHHHHHHHHH-cCCeEEEEeccccc-----------ccccceeeeccC---------Cc-ccc
Confidence 566899999999999877766665533 34456666654210 0111 0111111 11 334
Q ss_pred EEEechHHHHHHHhcCCCCCCCcEEEEeCCC
Q 006122 144 IKFLTDGVLLREMMDDPLLTKYSVIMVDEAH 174 (660)
Q Consensus 144 I~v~T~~~ll~~l~~~~~l~~~~~iIiDE~H 174 (660)
+.+-.+..+...+........+++|.||||+
T Consensus 62 ~~i~~~~~i~~~i~~~~~~~~~~~v~IDEaQ 92 (201)
T COG1435 62 VVIPSDTDIFDEIAALHEKPPVDCVLIDEAQ 92 (201)
T ss_pred eecCChHHHHHHHHhcccCCCcCEEEEehhH
Confidence 5566777777777655444448999999999
No 373
>cd01129 PulE-GspE PulE/GspE The type II secretory pathway is the main terminal branch of the general secretory pathway (GSP). It is responsible for the export the majority of Gram-negative bacterial exoenzymes and toxins. PulE is a cytoplasmic protein of the GSP, which contains an ATP binding site and a tetracysteine motif. This subgroup also includes PillB and HofB.
Probab=94.37 E-value=0.096 Score=52.79 Aligned_cols=34 Identities=38% Similarity=0.519 Sum_probs=24.3
Q ss_pred HHHHHHHh-cCCEEEEEcCCCCcHHHHHHHHHHhc
Q 006122 56 TAILYLVE-THATTIIVGETGSGKTTQIPQYLKEA 89 (660)
Q Consensus 56 ~~i~~~l~-~~~~vii~apTGsGKT~~ip~~l~~~ 89 (660)
+.+.+++. .+..++|+|+|||||||.+-.++...
T Consensus 70 ~~l~~~~~~~~GlilisG~tGSGKTT~l~all~~i 104 (264)
T cd01129 70 EIFRKLLEKPHGIILVTGPTGSGKTTTLYSALSEL 104 (264)
T ss_pred HHHHHHHhcCCCEEEEECCCCCcHHHHHHHHHhhh
Confidence 33444554 35689999999999999887665443
No 374
>COG1132 MdlB ABC-type multidrug transport system, ATPase and permease components [Defense mechanisms]
Probab=94.37 E-value=0.14 Score=58.02 Aligned_cols=29 Identities=38% Similarity=0.510 Sum_probs=23.8
Q ss_pred HhcCCEEEEEcCCCCcHHHHHHHHHHhcc
Q 006122 62 VETHATTIIVGETGSGKTTQIPQYLKEAG 90 (660)
Q Consensus 62 l~~~~~vii~apTGsGKT~~ip~~l~~~~ 90 (660)
+..++.+-++|||||||||++-.+.....
T Consensus 352 i~~Ge~vaiVG~sGsGKSTl~~LL~r~~~ 380 (567)
T COG1132 352 IEPGEKVAIVGPSGSGKSTLIKLLLRLYD 380 (567)
T ss_pred EcCCCEEEEECCCCCCHHHHHHHHhccCC
Confidence 57889999999999999999876665443
No 375
>KOG0391 consensus SNF2 family DNA-dependent ATPase [General function prediction only]
Probab=94.36 E-value=0.21 Score=57.94 Aligned_cols=148 Identities=16% Similarity=0.164 Sum_probs=83.0
Q ss_pred cHHHHHHHHHHH----hcCCEEEEEcCCCCcHHHHHHHHHHhccccCC--CeEEEEeCchHHHHHHH-HHHHHHHhCCee
Q 006122 51 VYKYRTAILYLV----ETHATTIIVGETGSGKTTQIPQYLKEAGWADG--GRVIACTQPRRLAVQAV-ASRVAEEMGVKV 123 (660)
Q Consensus 51 i~~~~~~i~~~l----~~~~~vii~apTGsGKT~~ip~~l~~~~~~~~--~~~i~v~p~r~la~~~~-~~~~~~~~~~~~ 123 (660)
+..+|+.=++.+ ++|-+-|+.-+.|-|||.|.-.++.......+ +.-++|+|+--+..-++ .+|++ .+.++
T Consensus 616 LReYQkiGLdWLatLYeknlNGILADEmGLGKTIQtISllAhLACeegnWGPHLIVVpTsviLnWEMElKRwc--PglKI 693 (1958)
T KOG0391|consen 616 LREYQKIGLDWLATLYEKNLNGILADEMGLGKTIQTISLLAHLACEEGNWGPHLIVVPTSVILNWEMELKRWC--PGLKI 693 (1958)
T ss_pred HHHHHHhhHHHHHHHHHhcccceehhhhcccchhHHHHHHHHHHhcccCCCCceEEeechhhhhhhHHHhhhC--CcceE
Confidence 345565555444 56778899999999999654444433322222 45588888876654432 22222 24555
Q ss_pred eeEEeeee-----eccccCCCCCceEEEechHHHHHHHhcCCCCCCCcEEEEeCCCcCCcChhHHHHHHHHHHHhcCCce
Q 006122 124 GEEVGYTI-----RFEDFTNKDLTAIKFLTDGVLLREMMDDPLLTKYSVIMVDEAHERSISTDILLGLLKKIQRCRSDLR 198 (660)
Q Consensus 124 ~~~vg~~~-----~~~~~~~~~~~~I~v~T~~~ll~~l~~~~~l~~~~~iIiDE~Her~~~~d~ll~~l~~~~~~~~~~k 198 (660)
-...|... |..+. .+...+|.|+++..+++-+.. ..-.++.++|+||+|. ..+ +-......++..+...
T Consensus 694 LTYyGs~kErkeKRqgW~-kPnaFHVCItSYklv~qd~~A-FkrkrWqyLvLDEaqn-IKn--fksqrWQAllnfnsqr- 767 (1958)
T KOG0391|consen 694 LTYYGSHKERKEKRQGWA-KPNAFHVCITSYKLVFQDLTA-FKRKRWQYLVLDEAQN-IKN--FKSQRWQALLNFNSQR- 767 (1958)
T ss_pred eeecCCHHHHHHHhhccc-CCCeeEEeehhhHHHHhHHHH-HHhhccceeehhhhhh-hcc--hhHHHHHHHhccchhh-
Confidence 55666322 12222 232578999988887765432 2256789999999993 222 2222233333344333
Q ss_pred EEEeeccc
Q 006122 199 LIISSATI 206 (660)
Q Consensus 199 ii~~SAT~ 206 (660)
-++++.|+
T Consensus 768 RLLLtgTP 775 (1958)
T KOG0391|consen 768 RLLLTGTP 775 (1958)
T ss_pred eeeecCCc
Confidence 45556664
No 376
>PRK13342 recombination factor protein RarA; Reviewed
Probab=94.32 E-value=0.11 Score=56.12 Aligned_cols=30 Identities=27% Similarity=0.355 Sum_probs=21.4
Q ss_pred HHHHhcC--CEEEEEcCCCCcHHHHHHHHHHh
Q 006122 59 LYLVETH--ATTIIVGETGSGKTTQIPQYLKE 88 (660)
Q Consensus 59 ~~~l~~~--~~vii~apTGsGKT~~ip~~l~~ 88 (660)
...+.++ ..+++.||+|+|||+++-.+...
T Consensus 28 ~~~i~~~~~~~ilL~GppGtGKTtLA~~ia~~ 59 (413)
T PRK13342 28 RRMIEAGRLSSMILWGPPGTGKTTLARIIAGA 59 (413)
T ss_pred HHHHHcCCCceEEEECCCCCCHHHHHHHHHHH
Confidence 3334444 36899999999999888766543
No 377
>TIGR02760 TraI_TIGR conjugative transfer relaxase protein TraI. This protein is a component of the relaxosome complex. In the process of conjugative plasmid transfer the realaxosome binds to the plasmid at the oriT (origin of transfer) site. The relaxase protein TraI mediates the single-strand nicking and ATP-dependent unwinding (relaxation, helicase activity) of the plasmid molecule. These two activities reside in separate domains of the protein.
Probab=94.28 E-value=0.25 Score=63.28 Aligned_cols=124 Identities=17% Similarity=0.149 Sum_probs=70.8
Q ss_pred CCcHHHHHHHHHHHhc--CCEEEEEcCCCCcHHHHHH---HHHHhccccCCCeEEEEeCchHHHHHHHHHHHHHHhCCee
Q 006122 49 LPVYKYRTAILYLVET--HATTIIVGETGSGKTTQIP---QYLKEAGWADGGRVIACTQPRRLAVQAVASRVAEEMGVKV 123 (660)
Q Consensus 49 lPi~~~~~~i~~~l~~--~~~vii~apTGsGKT~~ip---~~l~~~~~~~~~~~i~v~p~r~la~~~~~~~~~~~~~~~~ 123 (660)
..+...|++.+..+.. +++++|+|+.|+||||++- ..+.+.....+..++.++|+-+.+. .+. ..|...
T Consensus 1018 ~~Lt~~Q~~Ai~~il~~~~~~~~i~G~AGtGKTt~l~~~~~~i~~~~~~~g~~v~glApT~~Aa~-~L~-----~~g~~a 1091 (1960)
T TIGR02760 1018 ERLTHGQKQAIHLIISTKDRFVAVQGLAGVGKTTMLESRYKPVLQAFESEQLQVIGLAPTHEAVG-ELK-----SAGVQA 1091 (1960)
T ss_pred CCCCHHHHHHHHHHHhCCCcEEEEEeCCCCCHHHhHHHHHHHHHHHHHhcCCeEEEEeChHHHHH-HHH-----hcCCch
Confidence 4577778888877654 4788999999999998883 2222222223456778888754433 221 112210
Q ss_pred eeEEeeeeeccccCCCCCceEEEechHHHHHHH---hcCCCCCCCcEEEEeCCCcCCcChhHHHHHHHHHHHhcCCceEE
Q 006122 124 GEEVGYTIRFEDFTNKDLTAIKFLTDGVLLREM---MDDPLLTKYSVIMVDEAHERSISTDILLGLLKKIQRCRSDLRLI 200 (660)
Q Consensus 124 ~~~vg~~~~~~~~~~~~~~~I~v~T~~~ll~~l---~~~~~l~~~~~iIiDE~Her~~~~d~ll~~l~~~~~~~~~~kii 200 (660)
.|-..++... ...+.+...++|||||+= ++++..+..+++.+. ..+.|+|
T Consensus 1092 -----------------------~Ti~s~l~~~~~~~~~~~~~~~~v~ivDEas--Mv~~~~~~~l~~~~~--~~~ak~v 1144 (1960)
T TIGR02760 1092 -----------------------QTLDSFLTDISLYRNSGGDFRNTLFILDESS--MVSNFQLTHATELVQ--KSGSRAV 1144 (1960)
T ss_pred -----------------------HhHHHHhcCcccccccCCCCcccEEEEEccc--cccHHHHHHHHHhcc--CCCCEEE
Confidence 1222222100 111224566899999997 566666666665543 2356777
Q ss_pred Eeecc
Q 006122 201 ISSAT 205 (660)
Q Consensus 201 ~~SAT 205 (660)
++.=+
T Consensus 1145 lvGD~ 1149 (1960)
T TIGR02760 1145 SLGDI 1149 (1960)
T ss_pred EeCCh
Confidence 66543
No 378
>PRK07399 DNA polymerase III subunit delta'; Validated
Probab=94.27 E-value=0.42 Score=49.49 Aligned_cols=59 Identities=19% Similarity=0.269 Sum_probs=39.7
Q ss_pred eEEEechHHHHHHHhcCCCCCCCcEEEEeCCCcCCcChhHHHHHHHHHHHhcCCceEEEeec
Q 006122 143 AIKFLTDGVLLREMMDDPLLTKYSVIMVDEAHERSISTDILLGLLKKIQRCRSDLRLIISSA 204 (660)
Q Consensus 143 ~I~v~T~~~ll~~l~~~~~l~~~~~iIiDE~Her~~~~d~ll~~l~~~~~~~~~~kii~~SA 204 (660)
.|.+-....+.+.+...+....+.++||||+|. ++.....+++|.+..- ++..+|+++.
T Consensus 103 ~I~id~ir~i~~~l~~~p~~~~~kVvII~~ae~--m~~~aaNaLLK~LEEP-p~~~fILi~~ 161 (314)
T PRK07399 103 QIRLEQIREIKRFLSRPPLEAPRKVVVIEDAET--MNEAAANALLKTLEEP-GNGTLILIAP 161 (314)
T ss_pred cCcHHHHHHHHHHHccCcccCCceEEEEEchhh--cCHHHHHHHHHHHhCC-CCCeEEEEEC
Confidence 444444456677777778888999999999993 4555666677776544 4555555554
No 379
>COG1120 FepC ABC-type cobalamin/Fe3+-siderophores transport systems, ATPase components [Inorganic ion transport and metabolism / Coenzyme metabolism]
Probab=94.18 E-value=0.11 Score=51.56 Aligned_cols=28 Identities=29% Similarity=0.306 Sum_probs=23.2
Q ss_pred HhcCCEEEEEcCCCCcHHHHHHHHHHhc
Q 006122 62 VETHATTIIVGETGSGKTTQIPQYLKEA 89 (660)
Q Consensus 62 l~~~~~vii~apTGsGKT~~ip~~l~~~ 89 (660)
+.+|+++.|.||.||||||++-.+....
T Consensus 25 i~~G~i~~iiGpNG~GKSTLLk~l~g~l 52 (258)
T COG1120 25 IPKGEITGILGPNGSGKSTLLKCLAGLL 52 (258)
T ss_pred ecCCcEEEEECCCCCCHHHHHHHHhccC
Confidence 4578999999999999999987665543
No 380
>COG4555 NatA ABC-type Na+ transport system, ATPase component [Energy production and conversion / Inorganic ion transport and metabolism]
Probab=94.12 E-value=0.11 Score=48.81 Aligned_cols=51 Identities=18% Similarity=0.285 Sum_probs=33.4
Q ss_pred CCCCcEEEEeCCCcCCcChhHHHHHHHHHHHhcCCceEEEeeccc--chHHHHH
Q 006122 162 LTKYSVIMVDEAHERSISTDILLGLLKKIQRCRSDLRLIISSATI--EAKSMSA 213 (660)
Q Consensus 162 l~~~~~iIiDE~Her~~~~d~ll~~l~~~~~~~~~~kii~~SAT~--~~~~~~~ 213 (660)
..+.+++|+||.- -+++.-....+...+.+.+..-+.|++|.-. +.+.+++
T Consensus 149 vh~P~i~vlDEP~-sGLDi~~~r~~~dfi~q~k~egr~viFSSH~m~EvealCD 201 (245)
T COG4555 149 VHDPSILVLDEPT-SGLDIRTRRKFHDFIKQLKNEGRAVIFSSHIMQEVEALCD 201 (245)
T ss_pred hcCCCeEEEcCCC-CCccHHHHHHHHHHHHHhhcCCcEEEEecccHHHHHHhhh
Confidence 5566899999987 4677666666666666666555566666443 4454544
No 381
>PRK14971 DNA polymerase III subunits gamma and tau; Provisional
Probab=94.09 E-value=0.31 Score=55.28 Aligned_cols=48 Identities=25% Similarity=0.395 Sum_probs=29.6
Q ss_pred HHHHHhcCCCCCCCcEEEEeCCCcCCcChhHHHHHHHHHHHhcCCceEEE
Q 006122 152 LLREMMDDPLLTKYSVIMVDEAHERSISTDILLGLLKKIQRCRSDLRLII 201 (660)
Q Consensus 152 ll~~l~~~~~l~~~~~iIiDE~Her~~~~d~ll~~l~~~~~~~~~~kii~ 201 (660)
+...+...|....+.++||||+|.. ..+....+++.+..-.....+|+
T Consensus 109 li~~~~~~P~~~~~KVvIIdea~~L--s~~a~naLLK~LEepp~~tifIL 156 (614)
T PRK14971 109 LIEQVRIPPQIGKYKIYIIDEVHML--SQAAFNAFLKTLEEPPSYAIFIL 156 (614)
T ss_pred HHHHHhhCcccCCcEEEEEECcccC--CHHHHHHHHHHHhCCCCCeEEEE
Confidence 3344455677889999999999943 34455555655554333444444
No 382
>PRK11823 DNA repair protein RadA; Provisional
Probab=94.08 E-value=0.092 Score=57.15 Aligned_cols=41 Identities=27% Similarity=0.422 Sum_probs=31.6
Q ss_pred HhcCCEEEEEcCCCCcHHHHHHHHHHhccccCCCeEEEEeCc
Q 006122 62 VETHATTIIVGETGSGKTTQIPQYLKEAGWADGGRVIACTQP 103 (660)
Q Consensus 62 l~~~~~vii~apTGsGKT~~ip~~l~~~~~~~~~~~i~v~p~ 103 (660)
+..+..++|.|++|+|||+++-+++.... ..+.+++|++-.
T Consensus 77 i~~Gs~~lI~G~pG~GKTtL~lq~a~~~a-~~g~~vlYvs~E 117 (446)
T PRK11823 77 LVPGSVVLIGGDPGIGKSTLLLQVAARLA-AAGGKVLYVSGE 117 (446)
T ss_pred ccCCEEEEEECCCCCCHHHHHHHHHHHHH-hcCCeEEEEEcc
Confidence 44578999999999999999888877654 235567887754
No 383
>cd03233 ABC_PDR_domain1 The pleiotropic drug resistance (PDR) family of ATP-binding cassette (ABC) transporters. PDR is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. This PDR subfamily represents domain I of its (ABC-IM)2 organization. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds including sugars, ions, peptides, and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=94.08 E-value=0.25 Score=47.61 Aligned_cols=68 Identities=19% Similarity=0.271 Sum_probs=37.5
Q ss_pred echHHHHHHHhcCCCCCCCcEEEEeCCCcCCcChhHHHHHHHHHHHhcCC-ceEEEeecccchHHHHHHh
Q 006122 147 LTDGVLLREMMDDPLLTKYSVIMVDEAHERSISTDILLGLLKKIQRCRSD-LRLIISSATIEAKSMSAFF 215 (660)
Q Consensus 147 ~T~~~ll~~l~~~~~l~~~~~iIiDE~Her~~~~d~ll~~l~~~~~~~~~-~kii~~SAT~~~~~~~~~~ 215 (660)
.+.|...+......++.+-.++++||-= .+++......+.+.+.....+ -..++++.+-+.+.+.++.
T Consensus 119 LS~Ge~qrl~laral~~~p~llllDEPt-~~LD~~~~~~~~~~l~~~~~~~~~t~ii~~~h~~~~~~~~~ 187 (202)
T cd03233 119 ISGGERKRVSIAEALVSRASVLCWDNST-RGLDSSTALEILKCIRTMADVLKTTTFVSLYQASDEIYDLF 187 (202)
T ss_pred CCHHHHHHHHHHHHHhhCCCEEEEcCCC-ccCCHHHHHHHHHHHHHHHHhCCCEEEEEEcCCHHHHHHhC
Confidence 3444444443333346677999999977 567766555555555543322 2344555554444444443
No 384
>PHA03368 DNA packaging terminase subunit 1; Provisional
Probab=93.96 E-value=0.98 Score=50.47 Aligned_cols=141 Identities=19% Similarity=0.239 Sum_probs=78.0
Q ss_pred cCCEEEEEcCCCCcHHHHH-HHHHHhccccCCCeEEEEeCchHHHHHHHHHHHHH----HhCCeee-eEEeeee--eccc
Q 006122 64 THATTIIVGETGSGKTTQI-PQYLKEAGWADGGRVIACTQPRRLAVQAVASRVAE----EMGVKVG-EEVGYTI--RFED 135 (660)
Q Consensus 64 ~~~~vii~apTGsGKT~~i-p~~l~~~~~~~~~~~i~v~p~r~la~~~~~~~~~~----~~~~~~~-~~vg~~~--~~~~ 135 (660)
+.+..++..|==.|||+.+ +.+......-.+.++++.++.+..+.. +.+++.. ....... ..-|..+ .+..
T Consensus 253 kqk~tVflVPRR~GKTwivv~iI~~ll~s~~Gi~IgytAH~~~ts~~-vF~eI~~~le~~f~~~~v~~vkGe~I~i~f~n 331 (738)
T PHA03368 253 RQRATVFLVPRRHGKTWFLVPLIALALATFRGIKIGYTAHIRKATEP-VFEEIGARLRQWFGASRVDHVKGETISFSFPD 331 (738)
T ss_pred hccceEEEecccCCchhhHHHHHHHHHHhCCCCEEEEEcCcHHHHHH-HHHHHHHHHhhhcchhheeeecCcEEEEEecC
Confidence 4566888889999999544 444333322245666777766655443 3333332 2221111 1112111 1111
Q ss_pred cCCCCCceEEEechHHHHHHHhcCCC-CCCCcEEEEeCCCcCCcChhHHHHHHHHHHHhcCCceEEEeecccchHHHHHH
Q 006122 136 FTNKDLTAIKFLTDGVLLREMMDDPL-LTKYSVIMVDEAHERSISTDILLGLLKKIQRCRSDLRLIISSATIEAKSMSAF 214 (660)
Q Consensus 136 ~~~~~~~~I~v~T~~~ll~~l~~~~~-l~~~~~iIiDE~Her~~~~d~ll~~l~~~~~~~~~~kii~~SAT~~~~~~~~~ 214 (660)
.....|.+.+.. ..+.. =.+++++|||||+. +..+.+..++-.+... +.++|.+|.|-..+.-..|
T Consensus 332 ---G~kstI~FaSar------ntNsiRGqtfDLLIVDEAqF--Ik~~al~~ilp~l~~~--n~k~I~ISS~Ns~~~sTSF 398 (738)
T PHA03368 332 ---GSRSTIVFASSH------NTNGIRGQDFNLLFVDEANF--IRPDAVQTIMGFLNQT--NCKIIFVSSTNTGKASTSF 398 (738)
T ss_pred ---CCccEEEEEecc------CCCCccCCcccEEEEechhh--CCHHHHHHHHHHHhcc--CccEEEEecCCCCccchHH
Confidence 112466666331 01111 34789999999995 4446666666444333 8899999999866666666
Q ss_pred hhcC
Q 006122 215 FHAR 218 (660)
Q Consensus 215 ~~~~ 218 (660)
+.+.
T Consensus 399 L~nL 402 (738)
T PHA03368 399 LYNL 402 (738)
T ss_pred HHhh
Confidence 6553
No 385
>PRK05973 replicative DNA helicase; Provisional
Probab=93.93 E-value=0.061 Score=52.91 Aligned_cols=47 Identities=17% Similarity=0.104 Sum_probs=35.2
Q ss_pred HHHHHHHhcCCEEEEEcCCCCcHHHHHHHHHHhccccCCCeEEEEeCc
Q 006122 56 TAILYLVETHATTIIVGETGSGKTTQIPQYLKEAGWADGGRVIACTQP 103 (660)
Q Consensus 56 ~~i~~~l~~~~~vii~apTGsGKT~~ip~~l~~~~~~~~~~~i~v~p~ 103 (660)
+++..-+..+..++|.|++|+|||++.-+++.+... .+.++++++-.
T Consensus 55 ~~l~GGl~~Gsl~LIaG~PG~GKT~lalqfa~~~a~-~Ge~vlyfSlE 101 (237)
T PRK05973 55 EELFSQLKPGDLVLLGARPGHGKTLLGLELAVEAMK-SGRTGVFFTLE 101 (237)
T ss_pred HHhcCCCCCCCEEEEEeCCCCCHHHHHHHHHHHHHh-cCCeEEEEEEe
Confidence 334455667899999999999999988888877643 45667777543
No 386
>cd03289 ABCC_CFTR2 The CFTR subfamily domain 2. The cystic fibrosis transmembrane regulator (CFTR), the product of the gene mutated in patients with cystic fibrosis, has adapted the ABC transporter structural motif to form a tightly regulated anion channel at the apical surface of many epithelia. Use of the term assembly of a functional ion channel implies the coming together of subunits or at least smaller not-yet functional components of the active whole. In fact, on the basis of current knowledge only the CFTR polypeptide itself is required to form an ATP- and protein kinase A-dependent low-conductance chloride channel of the type present in the apical membrane of many epithelial cells. CFTR displays the typical organization (IM-ABC)2 and carries a characteristic hydrophilic R-domain that separates IM1-ABC1 from IM2-ABC2.
Probab=93.92 E-value=0.19 Score=50.98 Aligned_cols=28 Identities=29% Similarity=0.513 Sum_probs=23.2
Q ss_pred HhcCCEEEEEcCCCCcHHHHHHHHHHhc
Q 006122 62 VETHATTIIVGETGSGKTTQIPQYLKEA 89 (660)
Q Consensus 62 l~~~~~vii~apTGsGKT~~ip~~l~~~ 89 (660)
+..++.+.|.|++||||||++-.+....
T Consensus 27 I~~Ge~~~IvG~nGsGKSTLl~~L~gl~ 54 (275)
T cd03289 27 ISPGQRVGLLGRTGSGKSTLLSAFLRLL 54 (275)
T ss_pred EcCCCEEEEECCCCCCHHHHHHHHhhhc
Confidence 4678999999999999999887665443
No 387
>cd03249 ABC_MTABC3_MDL1_MDL2 MTABC3 (also known as ABCB6) is a mitochondrial ATP-binding cassette protein involved in iron homeostasis and one of four ABC transporters expressed in the mitochondrial inner membrane, the other three being MDL1(ABC7), MDL2, and ATM1. In fact, the yeast MDL1 (multidrug resistance-like protein 1) and MDL2 (multidrug resistance-like protein 2) transporters are also included in this CD. MDL1 is an ATP-dependent permease that acts as a high-copy suppressor of ATM1 and is thought to have a role in resistance to oxidative stress. Interestingly, subfamily B is more closely related to the carboxyl-terminal component of subfamily C than the two halves of ABCC molecules are with one another.
Probab=93.90 E-value=0.18 Score=50.04 Aligned_cols=27 Identities=26% Similarity=0.421 Sum_probs=22.7
Q ss_pred HhcCCEEEEEcCCCCcHHHHHHHHHHh
Q 006122 62 VETHATTIIVGETGSGKTTQIPQYLKE 88 (660)
Q Consensus 62 l~~~~~vii~apTGsGKT~~ip~~l~~ 88 (660)
+..++.+.|.|+.||||||++-.+.-.
T Consensus 26 i~~Ge~~~l~G~nGsGKSTLl~~i~G~ 52 (238)
T cd03249 26 IPPGKTVALVGSSGCGKSTVVSLLERF 52 (238)
T ss_pred ecCCCEEEEEeCCCCCHHHHHHHHhcc
Confidence 357899999999999999998766544
No 388
>TIGR02974 phageshock_pspF psp operon transcriptional activator PspF. Members of this protein family are PspF, the sigma-54-dependent transcriptional activator of the phage shock protein (psp) operon, in Escherichia coli and numerous other species. The psp operon is induced by a number of stress conditions, including heat shock, ethanol, and filamentous phage infection. Changed com_name to adhere to TIGR role notes conventions. 09/15/06 - DMH
Probab=93.88 E-value=0.43 Score=49.82 Aligned_cols=36 Identities=22% Similarity=0.297 Sum_probs=26.2
Q ss_pred HHHHHHHHHHhcCCEEEEEcCCCCcHHHHHHHHHHhc
Q 006122 53 KYRTAILYLVETHATTIIVGETGSGKTTQIPQYLKEA 89 (660)
Q Consensus 53 ~~~~~i~~~l~~~~~vii~apTGsGKT~~ip~~l~~~ 89 (660)
..++.+-.+...+..|+|.|++||||++++- ++...
T Consensus 10 ~~~~~~~~~a~~~~pVLI~GE~GtGK~~lAr-~iH~~ 45 (329)
T TIGR02974 10 EVLEQVSRLAPLDRPVLIIGERGTGKELIAA-RLHYL 45 (329)
T ss_pred HHHHHHHHHhCCCCCEEEECCCCChHHHHHH-HHHHh
Confidence 3455666666777889999999999996654 44443
No 389
>TIGR02525 plasmid_TraJ plasmid transfer ATPase TraJ. Members of this protein family are predicted ATPases associated with plasmid transfer loci in bacteria. This family is most similar to the DotB ATPase of a type-IV secretion-like system of obligate intracellular pathogens Legionella pneumophila and Coxiella burnetii (TIGR02524).
Probab=93.86 E-value=0.12 Score=54.51 Aligned_cols=27 Identities=33% Similarity=0.486 Sum_probs=21.1
Q ss_pred hcCCEEEEEcCCCCcHHHHHHHHHHhc
Q 006122 63 ETHATTIIVGETGSGKTTQIPQYLKEA 89 (660)
Q Consensus 63 ~~~~~vii~apTGsGKT~~ip~~l~~~ 89 (660)
..+..++|+|||||||||.+-.++...
T Consensus 147 ~~~GlilI~G~TGSGKTT~l~al~~~i 173 (372)
T TIGR02525 147 PAAGLGLICGETGSGKSTLAASIYQHC 173 (372)
T ss_pred hcCCEEEEECCCCCCHHHHHHHHHHHH
Confidence 456689999999999998886655443
No 390
>PRK04841 transcriptional regulator MalT; Provisional
Probab=93.86 E-value=0.3 Score=58.68 Aligned_cols=34 Identities=26% Similarity=0.374 Sum_probs=26.2
Q ss_pred HHHHHHHHh---cCCEEEEEcCCCCcHHHHHHHHHHh
Q 006122 55 RTAILYLVE---THATTIIVGETGSGKTTQIPQYLKE 88 (660)
Q Consensus 55 ~~~i~~~l~---~~~~vii~apTGsGKT~~ip~~l~~ 88 (660)
++.+++.+. ..+.++|+||.|.||||++-+++..
T Consensus 19 R~rl~~~l~~~~~~~~~~v~apaG~GKTtl~~~~~~~ 55 (903)
T PRK04841 19 RERLLAKLSGANNYRLVLVTSPAGYGKTTLISQWAAG 55 (903)
T ss_pred chHHHHHHhcccCCCeEEEECCCCCCHHHHHHHHHHh
Confidence 445555444 4578999999999999999998853
No 391
>TIGR02788 VirB11 P-type DNA transfer ATPase VirB11. The VirB11 protein is found in the vir locus of Agrobacterium Ti plasmids where it is involved in the type IV secretion system for DNA transfer. VirB11 is believed to be an ATPase. VirB11 is a homolog of the P-like conjugation system TrbB protein and the Flp pilus sytem protein TadA.
Probab=93.85 E-value=0.11 Score=53.64 Aligned_cols=29 Identities=38% Similarity=0.554 Sum_probs=23.5
Q ss_pred HHHhcCCEEEEEcCCCCcHHHHHHHHHHh
Q 006122 60 YLVETHATTIIVGETGSGKTTQIPQYLKE 88 (660)
Q Consensus 60 ~~l~~~~~vii~apTGsGKT~~ip~~l~~ 88 (660)
.++..+.+++|+|||||||||++-.++..
T Consensus 139 ~~v~~~~~ili~G~tGsGKTTll~al~~~ 167 (308)
T TIGR02788 139 LAIASRKNIIISGGTGSGKTTFLKSLVDE 167 (308)
T ss_pred HHhhCCCEEEEECCCCCCHHHHHHHHHcc
Confidence 34567889999999999999998765543
No 392
>PF00931 NB-ARC: NB-ARC domain; InterPro: IPR002182 This is the NB-ARC domain, a novel signalling motif found in bacteria and eukaryotes, shared by plant resistance gene products and regulators of cell death in animals []. This domain has been structurally characterised in the human protein apoptotic protease-activating factor 1 (Apaf-1) []. It contains the three-layered alpha-beta fold and subsequent short alpha-helical region characteristic of the AAA+ ATPase domain superfamily. While this domain is thought to bind and hyrolyse ATP, only ADP binding has been experimentally verified. It is proposed that binding and hydrolysis of ATP by this domain induces conformational changes the the overall protein, leading to formation of the apoptosome.; GO: 0043531 ADP binding; PDB: 3IZA_E 1Z6T_D 3SFZ_A 3SHF_A 1VT4_M 3IZ8_G 3LQR_A 2A5Y_C 3LQQ_A.
Probab=93.84 E-value=0.17 Score=51.72 Aligned_cols=129 Identities=15% Similarity=0.155 Sum_probs=62.0
Q ss_pred HHHHHHHHhc----CCEEEEEcCCCCcHHHHHHHHHHhccccC-CCeEEEEeCchHHHHHHHHHHHHHHhCCeeeeEEee
Q 006122 55 RTAILYLVET----HATTIIVGETGSGKTTQIPQYLKEAGWAD-GGRVIACTQPRRLAVQAVASRVAEEMGVKVGEEVGY 129 (660)
Q Consensus 55 ~~~i~~~l~~----~~~vii~apTGsGKT~~ip~~l~~~~~~~-~~~~i~v~p~r~la~~~~~~~~~~~~~~~~~~~vg~ 129 (660)
-+++.+.+.. .+++.|.|+.|+|||+++-.+........ -..++++.-.+......+.+.+...++......
T Consensus 5 ~~~l~~~L~~~~~~~~~v~I~G~~G~GKT~LA~~~~~~~~~~~~f~~v~wv~~~~~~~~~~~~~~i~~~l~~~~~~~--- 81 (287)
T PF00931_consen 5 IEKLKDWLLDNSNEVRVVAIVGMGGIGKTTLARQVARDLRIKNRFDGVIWVSLSKNPSLEQLLEQILRQLGEPDSSI--- 81 (287)
T ss_dssp HHHHHHHHHTTTTSSEEEEEEESTTSSHHHHHHHHHCHHHHCCCCTEEEEEEEES-SCCHHHHHHHHHHHTCC-STS---
T ss_pred HHHHHHHhhCCCCCeEEEEEEcCCcCCcceeeeeccccccccccccccccccccccccccccccccccccccccccc---
Confidence 3556666655 56899999999999998887775522112 133444433333222445555666665432110
Q ss_pred eeeccccCCCCCceEEEechHHHHHHHhcCCCCCCCcEEEEeCCCcCCcChhHHHHHHHHHHHhcCCceEEEeecc
Q 006122 130 TIRFEDFTNKDLTAIKFLTDGVLLREMMDDPLLTKYSVIMVDEAHERSISTDILLGLLKKIQRCRSDLRLIISSAT 205 (660)
Q Consensus 130 ~~~~~~~~~~~~~~I~v~T~~~ll~~l~~~~~l~~~~~iIiDE~Her~~~~d~ll~~l~~~~~~~~~~kii~~SAT 205 (660)
.... +... -...+.+.+... --++|+|.+++.. .+..+...+.....+.++|+.|=.
T Consensus 82 ------~~~~-~~~~---~~~~l~~~L~~~-----~~LlVlDdv~~~~----~~~~l~~~~~~~~~~~kilvTTR~ 138 (287)
T PF00931_consen 82 ------SDPK-DIEE---LQDQLRELLKDK-----RCLLVLDDVWDEE----DLEELREPLPSFSSGSKILVTTRD 138 (287)
T ss_dssp ------SCCS-SHHH---HHHHHHHHHCCT-----SEEEEEEEE-SHH----HH-------HCHHSS-EEEEEESC
T ss_pred ------cccc-cccc---ccccchhhhccc-----cceeeeeeecccc----cccccccccccccccccccccccc
Confidence 0001 0000 112333333332 4689999998422 221222222223346788887744
No 393
>KOG2028 consensus ATPase related to the helicase subunit of the Holliday junction resolvase [Replication, recombination and repair]
Probab=93.82 E-value=0.19 Score=51.31 Aligned_cols=31 Identities=29% Similarity=0.385 Sum_probs=23.1
Q ss_pred HHHHhcCC--EEEEEcCCCCcHHHHHHHHHHhc
Q 006122 59 LYLVETHA--TTIIVGETGSGKTTQIPQYLKEA 89 (660)
Q Consensus 59 ~~~l~~~~--~vii~apTGsGKT~~ip~~l~~~ 89 (660)
...++++. .+|+.||.|+|||++.-.+....
T Consensus 154 rs~ieq~~ipSmIlWGppG~GKTtlArlia~ts 186 (554)
T KOG2028|consen 154 RSLIEQNRIPSMILWGPPGTGKTTLARLIASTS 186 (554)
T ss_pred HHHHHcCCCCceEEecCCCCchHHHHHHHHhhc
Confidence 34566664 69999999999998877665443
No 394
>PRK08058 DNA polymerase III subunit delta'; Validated
Probab=93.78 E-value=0.4 Score=50.06 Aligned_cols=50 Identities=16% Similarity=0.230 Sum_probs=32.3
Q ss_pred HHHHHhcCCCCCCCcEEEEeCCCcCCcChhHHHHHHHHHHHhcCCceEEEee
Q 006122 152 LLREMMDDPLLTKYSVIMVDEAHERSISTDILLGLLKKIQRCRSDLRLIISS 203 (660)
Q Consensus 152 ll~~l~~~~~l~~~~~iIiDE~Her~~~~d~ll~~l~~~~~~~~~~kii~~S 203 (660)
+...+...+......++||||+|. ++.+....++|.+..-.++..+|+.+
T Consensus 98 l~~~~~~~~~~~~~kvviI~~a~~--~~~~a~NaLLK~LEEPp~~~~~Il~t 147 (329)
T PRK08058 98 LKEEFSKSGVESNKKVYIIEHADK--MTASAANSLLKFLEEPSGGTTAILLT 147 (329)
T ss_pred HHHHHhhCCcccCceEEEeehHhh--hCHHHHHHHHHHhcCCCCCceEEEEe
Confidence 344444456677889999999994 34445666777766555555555543
No 395
>cd03226 ABC_cobalt_CbiO_domain2 Domain II of the ABC component of a cobalt transport family found in bacteria, archaea, and eukaryota. The transition metal cobalt is an essential component of many enzymes and must be transported into cells in appropriate amounts when needed. The CbiMNQO family ABC transport system is involved in cobalt transport in association with the cobalamin (vitamin B12) biosynthetic pathways. Most cobalt (Cbi) transport systems possess a separate CbiN component, the cobalt-binding periplasmic protein, and they are encoded by the conserved gene cluster cbiMNQO. Both the CbiM and CbiQ proteins are integral cytoplasmic membrane proteins, and the CbiO protein has the linker peptide and the Walker A and B motifs commonly found in the ATPase components of the ABC-type transport systems.
Probab=93.78 E-value=0.16 Score=49.08 Aligned_cols=26 Identities=23% Similarity=0.293 Sum_probs=22.1
Q ss_pred HhcCCEEEEEcCCCCcHHHHHHHHHH
Q 006122 62 VETHATTIIVGETGSGKTTQIPQYLK 87 (660)
Q Consensus 62 l~~~~~vii~apTGsGKT~~ip~~l~ 87 (660)
+..++.+.|.||.||||||++-.+.-
T Consensus 23 i~~Ge~~~i~G~nGsGKSTLl~~l~G 48 (205)
T cd03226 23 LYAGEIIALTGKNGAGKTTLAKILAG 48 (205)
T ss_pred EcCCCEEEEECCCCCCHHHHHHHHhc
Confidence 45789999999999999999876654
No 396
>cd03237 ABC_RNaseL_inhibitor_domain2 The ATPase domain 2 of RNase L inhibitor. The ABC ATPase, RNase L inhibitor (RLI), is a key enzyme in ribosomal biogenesis, formation of translation preinitiation complexes, and assembly of HIV capsids. RLI's are not transport proteins and thus cluster with a group of soluble proteins that lack the transmembrane components commonly found in other members of the family. Structurally, RLI's have an N-terminal Fe-S domain and two nucleotide-binding domains which are arranged to form two composite active sites in their interface cleft. RLI is one of the most conserved enzymes between archaea and eukaryotes with a sequence identity of more than 48%. The high degree of evolutionary conservation suggests that RLI performs a central role in archaeal and eukaryotic physiology.
Probab=93.77 E-value=0.22 Score=49.69 Aligned_cols=27 Identities=30% Similarity=0.316 Sum_probs=22.4
Q ss_pred HhcCCEEEEEcCCCCcHHHHHHHHHHh
Q 006122 62 VETHATTIIVGETGSGKTTQIPQYLKE 88 (660)
Q Consensus 62 l~~~~~vii~apTGsGKT~~ip~~l~~ 88 (660)
+..++.+.|.||.||||||++-.+.-.
T Consensus 22 i~~Ge~~~i~G~NGsGKSTLlk~L~G~ 48 (246)
T cd03237 22 ISESEVIGILGPNGIGKTTFIKMLAGV 48 (246)
T ss_pred cCCCCEEEEECCCCCCHHHHHHHHhCC
Confidence 457889999999999999998766543
No 397
>cd03254 ABCC_Glucan_exporter_like Glucan exporter ATP-binding protein. In A. tumefaciens cyclic beta-1, 2-glucan must be transported into the periplasmic space to exert its action as a virluence factor. This subfamily belongs to the MRP-like family and is involved in drug, peptide, and lipid export. The MRP-like family, similar to all ABC proteins, have a common four-domain core structure constituted by two membrane-spanning domains each composed of six transmembrane (TM) helices and two nucleotide-binding domains (NBD). ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=93.73 E-value=0.18 Score=49.69 Aligned_cols=27 Identities=41% Similarity=0.553 Sum_probs=22.5
Q ss_pred HhcCCEEEEEcCCCCcHHHHHHHHHHh
Q 006122 62 VETHATTIIVGETGSGKTTQIPQYLKE 88 (660)
Q Consensus 62 l~~~~~vii~apTGsGKT~~ip~~l~~ 88 (660)
+..++.+.|.||.||||||++-.+.-.
T Consensus 26 i~~G~~~~i~G~nGsGKSTLl~~l~G~ 52 (229)
T cd03254 26 IKPGETVAIVGPTGAGKTTLINLLMRF 52 (229)
T ss_pred EcCCCEEEEECCCCCCHHHHHHHHhcC
Confidence 357899999999999999988766543
No 398
>TIGR02857 CydD thiol reductant ABC exporter, CydD subunit. Unfortunately, the gene symbol nomenclature adopted based on this operon in B. subtilis assigns cydC to the third gene in the operon where this gene is actually homologous to the E. coli cydD gene. We have chosen to name all homologs in this family in accordance with the precedence of publication of the E. coli name, CydD
Probab=93.71 E-value=0.072 Score=59.79 Aligned_cols=28 Identities=29% Similarity=0.402 Sum_probs=23.3
Q ss_pred HhcCCEEEEEcCCCCcHHHHHHHHHHhc
Q 006122 62 VETHATTIIVGETGSGKTTQIPQYLKEA 89 (660)
Q Consensus 62 l~~~~~vii~apTGsGKT~~ip~~l~~~ 89 (660)
+..|+.+.|+||+||||||++-.+....
T Consensus 345 i~~G~~~~ivG~sGsGKSTL~~ll~g~~ 372 (529)
T TIGR02857 345 VPPGERVALVGPSGAGKSTLLNLLLGFV 372 (529)
T ss_pred ECCCCEEEEECCCCCCHHHHHHHHhcCC
Confidence 4678999999999999999987665543
No 399
>PRK07133 DNA polymerase III subunits gamma and tau; Validated
Probab=93.70 E-value=0.34 Score=55.18 Aligned_cols=49 Identities=24% Similarity=0.460 Sum_probs=31.3
Q ss_pred HHHHHHhcCCCCCCCcEEEEeCCCcCCcChhHHHHHHHHHHHhcCCceEEE
Q 006122 151 VLLREMMDDPLLTKYSVIMVDEAHERSISTDILLGLLKKIQRCRSDLRLII 201 (660)
Q Consensus 151 ~ll~~l~~~~~l~~~~~iIiDE~Her~~~~d~ll~~l~~~~~~~~~~kii~ 201 (660)
.+...+...|...++.++||||||. +..+....+++.+-.-.+...+|+
T Consensus 105 eLie~~~~~P~~g~~KV~IIDEa~~--LT~~A~NALLKtLEEPP~~tifIL 153 (725)
T PRK07133 105 ELIENVKNLPTQSKYKIYIIDEVHM--LSKSAFNALLKTLEEPPKHVIFIL 153 (725)
T ss_pred HHHHHHHhchhcCCCEEEEEEChhh--CCHHHHHHHHHHhhcCCCceEEEE
Confidence 4455555566778999999999993 444556666666654433443444
No 400
>TIGR02012 tigrfam_recA protein RecA. This model describes orthologs of the recA protein. RecA promotes hybridization of homolgous regions of DNA. A segment of ssDNA can be hybridized to another ssDNA region, or to a dsDNA region. ATP is hydrolyzed in the process. Part of the SOS respones, it is regulated by LexA via autocatalytic cleavage.
Probab=93.70 E-value=0.19 Score=51.74 Aligned_cols=45 Identities=27% Similarity=0.226 Sum_probs=33.5
Q ss_pred HHhcCCEEEEEcCCCCcHHHHHHHHHHhccccCCCeEEEEeCchHH
Q 006122 61 LVETHATTIIVGETGSGKTTQIPQYLKEAGWADGGRVIACTQPRRL 106 (660)
Q Consensus 61 ~l~~~~~vii~apTGsGKT~~ip~~l~~~~~~~~~~~i~v~p~r~l 106 (660)
-+..+..+.|.||+|||||++.-+++.... ..+.+++++..+..+
T Consensus 51 Glp~G~iteI~G~~GsGKTtLaL~~~~~~~-~~g~~v~yId~E~~~ 95 (321)
T TIGR02012 51 GLPRGRIIEIYGPESSGKTTLALHAIAEAQ-KAGGTAAFIDAEHAL 95 (321)
T ss_pred CCcCCeEEEEECCCCCCHHHHHHHHHHHHH-HcCCcEEEEcccchh
Confidence 455678999999999999988877776653 345667777665433
No 401
>cd03248 ABCC_TAP TAP, the Transporter Associated with Antigen Processing; TAP is essential for peptide delivery from the cytosol into the lumen of the endoplasmic reticulum (ER), where these peptides are loaded on major histocompatibility complex (MHC) I molecules. Loaded MHC I leave the ER and display their antigenic cargo on the cell surface to cytotoxic T cells. Subsequently, virus-infected or malignantly transformed cells can be eliminated. TAP belongs to the large family of ATP-binding cassette (ABC) transporters, which translocate a vast variety of solutes across membranes.
Probab=93.69 E-value=0.23 Score=48.77 Aligned_cols=27 Identities=30% Similarity=0.413 Sum_probs=22.5
Q ss_pred HhcCCEEEEEcCCCCcHHHHHHHHHHh
Q 006122 62 VETHATTIIVGETGSGKTTQIPQYLKE 88 (660)
Q Consensus 62 l~~~~~vii~apTGsGKT~~ip~~l~~ 88 (660)
+..++.+.|.||.||||||++-.+.-.
T Consensus 37 i~~Ge~~~i~G~nGsGKSTLl~~l~Gl 63 (226)
T cd03248 37 LHPGEVTALVGPSGSGKSTVVALLENF 63 (226)
T ss_pred EcCCCEEEEECCCCCCHHHHHHHHhcC
Confidence 467899999999999999988766543
No 402
>PRK15177 Vi polysaccharide export ATP-binding protein VexC; Provisional
Probab=93.67 E-value=0.1 Score=50.82 Aligned_cols=27 Identities=30% Similarity=0.241 Sum_probs=22.4
Q ss_pred HhcCCEEEEEcCCCCcHHHHHHHHHHh
Q 006122 62 VETHATTIIVGETGSGKTTQIPQYLKE 88 (660)
Q Consensus 62 l~~~~~vii~apTGsGKT~~ip~~l~~ 88 (660)
+..++.+.|.||.||||||++-.+...
T Consensus 10 i~~Ge~~~l~G~NGsGKSTLlk~i~Gl 36 (213)
T PRK15177 10 MGYHEHIGILAAPGSGKTTLTRLLCGL 36 (213)
T ss_pred EcCCCEEEEECCCCCCHHHHHHHHhCC
Confidence 457889999999999999998766543
No 403
>PRK13657 cyclic beta-1,2-glucan ABC transporter; Provisional
Probab=93.67 E-value=0.055 Score=61.54 Aligned_cols=56 Identities=14% Similarity=0.201 Sum_probs=35.8
Q ss_pred chHHHHHHHhcCCCCCCCcEEEEeCCCcCCcChhHHHHHHHHHHHhcCCceEEEeec
Q 006122 148 TDGVLLREMMDDPLLTKYSVIMVDEAHERSISTDILLGLLKKIQRCRSDLRLIISSA 204 (660)
Q Consensus 148 T~~~ll~~l~~~~~l~~~~~iIiDE~Her~~~~d~ll~~l~~~~~~~~~~kii~~SA 204 (660)
+.|.-.|......++++-+++|+||.= -.++.+.-..+.+.+....++..+|+.|-
T Consensus 473 SgGq~QRialARall~~~~iliLDEpt-s~LD~~t~~~i~~~l~~~~~~~tvIiitH 528 (588)
T PRK13657 473 SGGERQRLAIARALLKDPPILILDEAT-SALDVETEAKVKAALDELMKGRTTFIIAH 528 (588)
T ss_pred CHHHHHHHHHHHHHhcCCCEEEEeCCc-cCCCHHHHHHHHHHHHHHhcCCEEEEEEe
Confidence 334444444434457788999999998 56777777777776666555544555443
No 404
>COG1136 SalX ABC-type antimicrobial peptide transport system, ATPase component [Defense mechanisms]
Probab=93.65 E-value=0.076 Score=51.53 Aligned_cols=27 Identities=33% Similarity=0.383 Sum_probs=22.7
Q ss_pred HhcCCEEEEEcCCCCcHHHHHHHHHHh
Q 006122 62 VETHATTIIVGETGSGKTTQIPQYLKE 88 (660)
Q Consensus 62 l~~~~~vii~apTGsGKT~~ip~~l~~ 88 (660)
+..+..+.|.||+||||||++-.+-.-
T Consensus 28 i~~Ge~vaI~GpSGSGKSTLLniig~l 54 (226)
T COG1136 28 IEAGEFVAIVGPSGSGKSTLLNLLGGL 54 (226)
T ss_pred EcCCCEEEEECCCCCCHHHHHHHHhcc
Confidence 468999999999999999998766433
No 405
>COG4962 CpaF Flp pilus assembly protein, ATPase CpaF [Intracellular trafficking and secretion]
Probab=93.63 E-value=0.16 Score=51.87 Aligned_cols=45 Identities=29% Similarity=0.274 Sum_probs=30.3
Q ss_pred HHHHHHHhcCCEEEEEcCCCCcHHHHHHHHHHhccccCCCeEEEEeC
Q 006122 56 TAILYLVETHATTIIVGETGSGKTTQIPQYLKEAGWADGGRVIACTQ 102 (660)
Q Consensus 56 ~~i~~~l~~~~~vii~apTGsGKT~~ip~~l~~~~~~~~~~~i~v~p 102 (660)
.-+..++....+++|+|.|||||||++-.+...-.. ..++|.+=-
T Consensus 164 ~~L~~av~~r~NILisGGTGSGKTTlLNal~~~i~~--~eRvItiED 208 (355)
T COG4962 164 KFLRRAVGIRCNILISGGTGSGKTTLLNALSGFIDS--DERVITIED 208 (355)
T ss_pred HHHHHHHhhceeEEEeCCCCCCHHHHHHHHHhcCCC--cccEEEEee
Confidence 334455566679999999999999998876655432 234454433
No 406
>cd00984 DnaB_C DnaB helicase C terminal domain. The hexameric helicase DnaB unwinds the DNA duplex at the chromosome replication fork. Although the mechanism by which DnaB both couples ATP hydrolysis to translocation along DNA and denatures the duplex is unknown, a change in the quaternary structure of the protein involving dimerization of the N-terminal domain has been observed and may occur during the enzymatic cycle. This C-terminal domain contains an ATP-binding site and is therefore probably the site of ATP hydrolysis.
Probab=93.63 E-value=0.06 Score=53.57 Aligned_cols=45 Identities=16% Similarity=0.103 Sum_probs=34.1
Q ss_pred HHHHHhcCCEEEEEcCCCCcHHHHHHHHHHhccccCCCeEEEEeC
Q 006122 58 ILYLVETHATTIIVGETGSGKTTQIPQYLKEAGWADGGRVIACTQ 102 (660)
Q Consensus 58 i~~~l~~~~~vii~apTGsGKT~~ip~~l~~~~~~~~~~~i~v~p 102 (660)
++.-+..++.++|.|++|+|||+++-+++.......+.++++++-
T Consensus 6 ~~~Gl~~G~l~lI~G~~G~GKT~~~~~~~~~~~~~~g~~vly~s~ 50 (242)
T cd00984 6 LTGGLQPGDLIIIAARPSMGKTAFALNIAENIAKKQGKPVLFFSL 50 (242)
T ss_pred hhcCCCCCeEEEEEeCCCCCHHHHHHHHHHHHHHhCCCceEEEeC
Confidence 333456788999999999999988888877765543666777764
No 407
>KOG0058 consensus Peptide exporter, ABC superfamily [Intracellular trafficking, secretion, and vesicular transport]
Probab=93.63 E-value=0.058 Score=60.06 Aligned_cols=29 Identities=28% Similarity=0.383 Sum_probs=23.8
Q ss_pred HHhcCCEEEEEcCCCCcHHHHHHHHHHhc
Q 006122 61 LVETHATTIIVGETGSGKTTQIPQYLKEA 89 (660)
Q Consensus 61 ~l~~~~~vii~apTGsGKT~~ip~~l~~~ 89 (660)
.+..++++-++||.||||||++..+..-.
T Consensus 490 ti~pGe~vALVGPSGsGKSTiasLL~rfY 518 (716)
T KOG0058|consen 490 TIRPGEVVALVGPSGSGKSTIASLLLRFY 518 (716)
T ss_pred eeCCCCEEEEECCCCCCHHHHHHHHHHhc
Confidence 35789999999999999999987665443
No 408
>TIGR00635 ruvB Holliday junction DNA helicase, RuvB subunit. RuvA specifically binds Holliday junctions as a sandwich of two tetramers and maintains the configuration of the junction. It forms a complex with two hexameric rings of RuvB, the subunit that contains helicase activity. The complex drives ATP-dependent branch migration of the Holliday junction recombination intermediate. The endonuclease RuvC resolves junctions.
Probab=93.63 E-value=0.27 Score=50.83 Aligned_cols=23 Identities=30% Similarity=0.367 Sum_probs=18.5
Q ss_pred CEEEEEcCCCCcHHHHHHHHHHh
Q 006122 66 ATTIIVGETGSGKTTQIPQYLKE 88 (660)
Q Consensus 66 ~~vii~apTGsGKT~~ip~~l~~ 88 (660)
+++++.||+|+|||+++-.+..+
T Consensus 31 ~~~ll~Gp~G~GKT~la~~ia~~ 53 (305)
T TIGR00635 31 DHLLLYGPPGLGKTTLAHIIANE 53 (305)
T ss_pred CeEEEECCCCCCHHHHHHHHHHH
Confidence 56999999999999777655543
No 409
>PRK08769 DNA polymerase III subunit delta'; Validated
Probab=93.62 E-value=0.48 Score=49.00 Aligned_cols=60 Identities=22% Similarity=0.186 Sum_probs=40.4
Q ss_pred EEEechHHHHHHHhcCCCCCCCcEEEEeCCCcCCcChhHHHHHHHHHHHhcCCceEEEeecc
Q 006122 144 IKFLTDGVLLREMMDDPLLTKYSVIMVDEAHERSISTDILLGLLKKIQRCRSDLRLIISSAT 205 (660)
Q Consensus 144 I~v~T~~~ll~~l~~~~~l~~~~~iIiDE~Her~~~~d~ll~~l~~~~~~~~~~kii~~SAT 205 (660)
|.+-.-..+.+.+...+....+.++||||||. ++.....+++|.+..-.++..+|++|.-
T Consensus 93 I~idqIR~l~~~~~~~p~~g~~kV~iI~~ae~--m~~~AaNaLLKtLEEPp~~~~fiL~~~~ 152 (319)
T PRK08769 93 IVIEQVREISQKLALTPQYGIAQVVIVDPADA--INRAACNALLKTLEEPSPGRYLWLISAQ 152 (319)
T ss_pred ccHHHHHHHHHHHhhCcccCCcEEEEeccHhh--hCHHHHHHHHHHhhCCCCCCeEEEEECC
Confidence 44333344555555566677899999999993 4566777888877665556666666644
No 410
>PRK13543 cytochrome c biogenesis protein CcmA; Provisional
Probab=93.58 E-value=0.14 Score=49.90 Aligned_cols=27 Identities=26% Similarity=0.433 Sum_probs=22.5
Q ss_pred HhcCCEEEEEcCCCCcHHHHHHHHHHh
Q 006122 62 VETHATTIIVGETGSGKTTQIPQYLKE 88 (660)
Q Consensus 62 l~~~~~vii~apTGsGKT~~ip~~l~~ 88 (660)
+..++.+.|.|++||||||++-.+.-.
T Consensus 34 i~~Ge~~~i~G~nGsGKSTLl~~i~G~ 60 (214)
T PRK13543 34 VDAGEALLVQGDNGAGKTTLLRVLAGL 60 (214)
T ss_pred ECCCCEEEEEcCCCCCHHHHHHHHhCC
Confidence 357899999999999999988766543
No 411
>TIGR02688 conserved hypothetical protein TIGR02688. Members of this family are uncharacterized proteins sporadically distributed in bacteria and archaea, about 470 amino acids in length. Several members of this family appear in public databases with annotation as ATP-dependent protease La, despite the lack of similarity to families TIGR00763 (ATP-dependent protease La) or pfam02190 (ATP-dependent protease La (LON) domain). This protein is repeatedly found downstream of another uncharacterized protein of about 880 amino acids in length, described by model TIGR02687.
Probab=93.54 E-value=0.13 Score=54.55 Aligned_cols=26 Identities=31% Similarity=0.388 Sum_probs=20.7
Q ss_pred HHHhcCCEEEEEcCCCCcHHHHHHHH
Q 006122 60 YLVETHATTIIVGETGSGKTTQIPQY 85 (660)
Q Consensus 60 ~~l~~~~~vii~apTGsGKT~~ip~~ 85 (660)
..++.+.+++..||+|+|||++.-.+
T Consensus 204 ~fve~~~Nli~lGp~GTGKThla~~l 229 (449)
T TIGR02688 204 PLVEPNYNLIELGPKGTGKSYIYNNL 229 (449)
T ss_pred HHHhcCCcEEEECCCCCCHHHHHHHH
Confidence 34578899999999999999665443
No 412
>PRK11176 lipid transporter ATP-binding/permease protein; Provisional
Probab=93.52 E-value=0.11 Score=59.11 Aligned_cols=28 Identities=29% Similarity=0.364 Sum_probs=23.3
Q ss_pred HhcCCEEEEEcCCCCcHHHHHHHHHHhc
Q 006122 62 VETHATTIIVGETGSGKTTQIPQYLKEA 89 (660)
Q Consensus 62 l~~~~~vii~apTGsGKT~~ip~~l~~~ 89 (660)
+..++.+.|+|++||||||++-.+....
T Consensus 366 i~~G~~~aIvG~sGsGKSTLl~ll~gl~ 393 (582)
T PRK11176 366 IPAGKTVALVGRSGSGKSTIANLLTRFY 393 (582)
T ss_pred eCCCCEEEEECCCCCCHHHHHHHHHhcc
Confidence 4678999999999999999987766544
No 413
>PRK09354 recA recombinase A; Provisional
Probab=93.49 E-value=0.22 Score=51.88 Aligned_cols=45 Identities=27% Similarity=0.261 Sum_probs=34.6
Q ss_pred HhcCCEEEEEcCCCCcHHHHHHHHHHhccccCCCeEEEEeCchHHH
Q 006122 62 VETHATTIIVGETGSGKTTQIPQYLKEAGWADGGRVIACTQPRRLA 107 (660)
Q Consensus 62 l~~~~~vii~apTGsGKT~~ip~~l~~~~~~~~~~~i~v~p~r~la 107 (660)
+..+.++.|.||+|||||++.-+++.+.. ..+..++++.....+.
T Consensus 57 ip~G~IteI~G~~GsGKTtLal~~~~~~~-~~G~~~~yId~E~s~~ 101 (349)
T PRK09354 57 LPRGRIVEIYGPESSGKTTLALHAIAEAQ-KAGGTAAFIDAEHALD 101 (349)
T ss_pred CcCCeEEEEECCCCCCHHHHHHHHHHHHH-HcCCcEEEECCccchH
Confidence 44578999999999999988888877653 3466788887766554
No 414
>PF10443 RNA12: RNA12 protein; InterPro: IPR018850 Mitochondrial escape protein 2 (also known as RNA12) plays a role in maintaining the mitochondrial genome and in controlling mtDNA escape [, ]. It is also involved in the regulation of mtDNA nucleotide structure and number []. Additionally, this protein have a dispensable role in the early maturation of pre-rRNA [].
Probab=93.49 E-value=0.15 Score=53.93 Aligned_cols=54 Identities=13% Similarity=0.206 Sum_probs=36.3
Q ss_pred CCcEEEEeCCCcCCcChhHHHHHHHHHHH---hcCCceEEEeeccc-chHHHHHHhhc
Q 006122 164 KYSVIMVDEAHERSISTDILLGLLKKIQR---CRSDLRLIISSATI-EAKSMSAFFHA 217 (660)
Q Consensus 164 ~~~~iIiDE~Her~~~~d~ll~~l~~~~~---~~~~~kii~~SAT~-~~~~~~~~~~~ 217 (660)
..-+||||-+..+.-..+++...+..+.. ...-..+|++|... ....+++.+.+
T Consensus 148 ~~PVVVIdnF~~k~~~~~~iy~~laeWAa~Lv~~nIAHVIFlT~dv~~~k~LskaLPn 205 (431)
T PF10443_consen 148 RRPVVVIDNFLHKAEENDFIYDKLAEWAASLVQNNIAHVIFLTDDVSYSKPLSKALPN 205 (431)
T ss_pred cCCEEEEcchhccCcccchHHHHHHHHHHHHHhcCccEEEEECCCCchhhhHHHhCCC
Confidence 35799999988776666666665555433 34557899999887 44556665544
No 415
>COG1119 ModF ABC-type molybdenum transport system, ATPase component/photorepair protein PhrA [Inorganic ion transport and metabolism]
Probab=93.49 E-value=0.33 Score=47.21 Aligned_cols=31 Identities=32% Similarity=0.322 Sum_probs=25.6
Q ss_pred HhcCCEEEEEcCCCCcHHHHHHHHHHhcccc
Q 006122 62 VETHATTIIVGETGSGKTTQIPQYLKEAGWA 92 (660)
Q Consensus 62 l~~~~~vii~apTGsGKT~~ip~~l~~~~~~ 92 (660)
++.+.+-+|.||.||||||++-.+..+....
T Consensus 54 V~~ge~W~I~G~NGsGKTTLL~ll~~~~~ps 84 (257)
T COG1119 54 VNPGEHWAIVGPNGAGKTTLLSLLTGEHPPS 84 (257)
T ss_pred ecCCCcEEEECCCCCCHHHHHHHHhcccCCC
Confidence 4678889999999999999998777666443
No 416
>TIGR03771 anch_rpt_ABC anchored repeat-type ABC transporter, ATP-binding subunit. This protein family is the ATP-binding cassette subunit of binding protein-dependent ABC transporter complex that strictly co-occurs with TIGR03769. TIGRFAMs model TIGR03769 describes a protein domain that occurs singly or as one of up to three repeats in proteins of a number of Actinobacteria, including Propionibacterium acnes KPA171202. The TIGR03769 domain occurs both in an adjacent gene for the substrate-binding protein and in additional (often nearby) proteins, often with LPXTG-like sortase recognition signals. Homologous ATP-binding subunits outside the scope of this family include manganese transporter MntA in Synechocystis sp. PCC 6803 and chelated iron transporter subunits. The function of this transporter complex is unknown.
Probab=93.49 E-value=0.66 Score=45.49 Aligned_cols=27 Identities=26% Similarity=0.342 Sum_probs=22.6
Q ss_pred HhcCCEEEEEcCCCCcHHHHHHHHHHh
Q 006122 62 VETHATTIIVGETGSGKTTQIPQYLKE 88 (660)
Q Consensus 62 l~~~~~vii~apTGsGKT~~ip~~l~~ 88 (660)
+..++.+.|.|+.||||||++-.+.-.
T Consensus 3 i~~Ge~~~l~G~nGsGKSTLl~~l~G~ 29 (223)
T TIGR03771 3 ADKGELLGLLGPNGAGKTTLLRAILGL 29 (223)
T ss_pred cCCCcEEEEECCCCCCHHHHHHHHhCC
Confidence 467899999999999999988766543
No 417
>COG2255 RuvB Holliday junction resolvasome, helicase subunit [DNA replication, recombination, and repair]
Probab=93.46 E-value=0.25 Score=49.06 Aligned_cols=24 Identities=29% Similarity=0.369 Sum_probs=18.9
Q ss_pred CEEEEEcCCCCcHHHHHHHHHHhc
Q 006122 66 ATTIIVGETGSGKTTQIPQYLKEA 89 (660)
Q Consensus 66 ~~vii~apTGsGKT~~ip~~l~~~ 89 (660)
+++++.||+|-||||+.-.+..+.
T Consensus 53 DHvLl~GPPGlGKTTLA~IIA~Em 76 (332)
T COG2255 53 DHVLLFGPPGLGKTTLAHIIANEL 76 (332)
T ss_pred CeEEeeCCCCCcHHHHHHHHHHHh
Confidence 689999999999998766544433
No 418
>TIGR03345 VI_ClpV1 type VI secretion ATPase, ClpV1 family. Members of this protein family are homologs of ClpB, an ATPase associated with chaperone-related functions. These ClpB homologs, designated ClpV1, are a key component of the bacterial pathogenicity-associated type VI secretion system.
Probab=93.46 E-value=0.53 Score=55.59 Aligned_cols=20 Identities=30% Similarity=0.463 Sum_probs=16.1
Q ss_pred EEEEEcCCCCcHHHHHHHHH
Q 006122 67 TTIIVGETGSGKTTQIPQYL 86 (660)
Q Consensus 67 ~vii~apTGsGKT~~ip~~l 86 (660)
++++.||||+|||.++-.+.
T Consensus 598 ~~lf~Gp~GvGKT~lA~~La 617 (852)
T TIGR03345 598 VFLLVGPSGVGKTETALALA 617 (852)
T ss_pred EEEEECCCCCCHHHHHHHHH
Confidence 68999999999997665443
No 419
>cd00544 CobU Adenosylcobinamide kinase / adenosylcobinamide phosphate guanyltransferase (CobU). CobU is bifunctional cobalbumin biosynthesis enzymes which display adenosylcobinamide kinase and adenosylcobinamide phosphate guanyltransferase activity. This enzyme is a homotrimer with a propeller-like shape.
Probab=93.46 E-value=0.45 Score=44.38 Aligned_cols=82 Identities=18% Similarity=0.192 Sum_probs=47.5
Q ss_pred EEEEcCCCCcHHHHHHHHHHhccccCCCeEEEEeCchHHHHHHHHHHHHHHhCCeeeeEEeeeeeccccCCCCCceEEEe
Q 006122 68 TIIVGETGSGKTTQIPQYLKEAGWADGGRVIACTQPRRLAVQAVASRVAEEMGVKVGEEVGYTIRFEDFTNKDLTAIKFL 147 (660)
Q Consensus 68 vii~apTGsGKT~~ip~~l~~~~~~~~~~~i~v~p~r~la~~~~~~~~~~~~~~~~~~~vg~~~~~~~~~~~~~~~I~v~ 147 (660)
++|.|++|||||+...+++.. .+.+++++.-.+.. -..+.+|+....... + ..=..+-
T Consensus 2 ~li~G~~~sGKS~~a~~~~~~----~~~~~~y~at~~~~-d~em~~rI~~H~~~R----------------~-~~w~t~E 59 (169)
T cd00544 2 ILVTGGARSGKSRFAERLAAE----LGGPVTYIATAEAF-DDEMAERIARHRKRR----------------P-AHWRTIE 59 (169)
T ss_pred EEEECCCCCCHHHHHHHHHHh----cCCCeEEEEccCcC-CHHHHHHHHHHHHhC----------------C-CCceEee
Confidence 689999999999888888765 23456777555433 335666655532111 1 1122234
Q ss_pred chHHHHHHHhcCCCCCCCcEEEEeCCC
Q 006122 148 TDGVLLREMMDDPLLTKYSVIMVDEAH 174 (660)
Q Consensus 148 T~~~ll~~l~~~~~l~~~~~iIiDE~H 174 (660)
++..+.+.+...+ ..+.|+||-..
T Consensus 60 ~~~~l~~~l~~~~---~~~~VLIDclt 83 (169)
T cd00544 60 TPRDLVSALKELD---PGDVVLIDCLT 83 (169)
T ss_pred cHHHHHHHHHhcC---CCCEEEEEcHh
Confidence 4555555543221 35678888765
No 420
>COG1126 GlnQ ABC-type polar amino acid transport system, ATPase component [Amino acid transport and metabolism]
Probab=93.42 E-value=0.08 Score=50.39 Aligned_cols=25 Identities=36% Similarity=0.547 Sum_probs=21.5
Q ss_pred HhcCCEEEEEcCCCCcHHHHHHHHH
Q 006122 62 VETHATTIIVGETGSGKTTQIPQYL 86 (660)
Q Consensus 62 l~~~~~vii~apTGsGKT~~ip~~l 86 (660)
+.++.+++|+||.||||||++--+-
T Consensus 25 v~~Gevv~iiGpSGSGKSTlLRclN 49 (240)
T COG1126 25 VEKGEVVVIIGPSGSGKSTLLRCLN 49 (240)
T ss_pred EcCCCEEEEECCCCCCHHHHHHHHH
Confidence 5689999999999999999886543
No 421
>PRK13538 cytochrome c biogenesis protein CcmA; Provisional
Probab=93.39 E-value=0.13 Score=49.73 Aligned_cols=27 Identities=22% Similarity=0.276 Sum_probs=22.5
Q ss_pred HhcCCEEEEEcCCCCcHHHHHHHHHHh
Q 006122 62 VETHATTIIVGETGSGKTTQIPQYLKE 88 (660)
Q Consensus 62 l~~~~~vii~apTGsGKT~~ip~~l~~ 88 (660)
+..+..+.|.||+||||||++-.+.-.
T Consensus 24 i~~Ge~~~l~G~nGsGKSTLl~~l~G~ 50 (204)
T PRK13538 24 LNAGELVQIEGPNGAGKTSLLRILAGL 50 (204)
T ss_pred ECCCcEEEEECCCCCCHHHHHHHHhCC
Confidence 457889999999999999988766543
No 422
>COG1110 Reverse gyrase [DNA replication, recombination, and repair]
Probab=93.39 E-value=0.2 Score=57.64 Aligned_cols=77 Identities=13% Similarity=0.188 Sum_probs=61.4
Q ss_pred HHHHHHhcCCCCcEEEEcCCHHHHHHHHHHHHHHhhhccCCCCCeEEEEccCCCCHHHHhhhcCCCCCCCcEEEEeCCCc
Q 006122 266 TVLLIHDKEPPGDILVFLTGQDDIDATIQLLTEEARTSKKNSSGLIILPLYSGLSRAEQEQVFSPTPRGKRKVVISTNIA 345 (660)
Q Consensus 266 ~~~~~~~~~~~~~iLVF~~~~~~i~~l~~~L~~~~~~~~~~~~~~~v~~lh~~l~~~~r~~v~~~f~~g~~~vlvaT~i~ 345 (660)
.+..+.....++++++.+||..=+.++++.|.+.....+ .....+. +||.|+..+++.+++.+.+|..+|+|+|+..
T Consensus 115 ~~~sl~~a~kgkr~yii~PT~~Lv~Q~~~kl~~~~e~~~--~~~~~~~-yh~~l~~~ekee~le~i~~gdfdIlitTs~F 191 (1187)
T COG1110 115 LLMSLYLAKKGKRVYIIVPTTTLVRQVYERLKKFAEDAG--SLDVLVV-YHSALPTKEKEEALERIESGDFDILITTSQF 191 (1187)
T ss_pred HHHHHHHHhcCCeEEEEecCHHHHHHHHHHHHHHHhhcC--Ccceeee-eccccchHHHHHHHHHHhcCCccEEEEeHHH
Confidence 333344444567899999999999999999988765433 3345555 9999999999999999999999999999853
No 423
>cd03300 ABC_PotA_N PotA is an ABC-type transporter and the ATPase component of the spermidine/putrescine-preferential uptake system consisting of PotA, -B, -C, and -D. PotA has two domains with the N-terminal domain containing the ATPase activity and the residues required for homodimerization with PotA and heterdimerization with PotB. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=93.38 E-value=0.089 Score=52.02 Aligned_cols=27 Identities=22% Similarity=0.289 Sum_probs=22.8
Q ss_pred HhcCCEEEEEcCCCCcHHHHHHHHHHh
Q 006122 62 VETHATTIIVGETGSGKTTQIPQYLKE 88 (660)
Q Consensus 62 l~~~~~vii~apTGsGKT~~ip~~l~~ 88 (660)
+..++.+.|.|+.|+||||++-.+.-.
T Consensus 23 i~~Ge~~~i~G~nGsGKSTLl~~l~g~ 49 (232)
T cd03300 23 IKEGEFFTLLGPSGCGKTTLLRLIAGF 49 (232)
T ss_pred ECCCCEEEEECCCCCCHHHHHHHHhcC
Confidence 457899999999999999998766544
No 424
>cd03255 ABC_MJ0796_Lo1CDE_FtsE This family is comprised of MJ0796 ATP-binding cassette, macrolide-specific ABC-type efflux carrier (MacAB), and proteins involved in cell division (FtsE), and release of liporoteins from the cytoplasmic membrane (LolCDE). They are clustered together phylogenetically. MacAB is an exporter that confers resistance to macrolides, while the LolCDE system is not a transporter at all. An FtsE null mutants showed filamentous growth and appeared viable on high salt medium only, indicating a role for FtsE in cell division and/or salt transport. The LolCDE complex catalyses the release of lipoproteins from the cytoplasmic membrane prior to their targeting to the outer membrane.
Probab=93.37 E-value=0.1 Score=50.98 Aligned_cols=27 Identities=33% Similarity=0.373 Sum_probs=22.4
Q ss_pred HhcCCEEEEEcCCCCcHHHHHHHHHHh
Q 006122 62 VETHATTIIVGETGSGKTTQIPQYLKE 88 (660)
Q Consensus 62 l~~~~~vii~apTGsGKT~~ip~~l~~ 88 (660)
+..++.+.|.||+||||||++-.+.-.
T Consensus 27 i~~G~~~~l~G~nGsGKSTLl~~i~Gl 53 (218)
T cd03255 27 IEKGEFVAIVGPSGSGKSTLLNILGGL 53 (218)
T ss_pred EcCCCEEEEEcCCCCCHHHHHHHHhCC
Confidence 357899999999999999988766543
No 425
>COG0593 DnaA ATPase involved in DNA replication initiation [DNA replication, recombination, and repair]
Probab=93.37 E-value=0.55 Score=49.83 Aligned_cols=23 Identities=26% Similarity=0.277 Sum_probs=18.0
Q ss_pred CCEEEEEcCCCCcHHHHHHHHHH
Q 006122 65 HATTIIVGETGSGKTTQIPQYLK 87 (660)
Q Consensus 65 ~~~vii~apTGsGKT~~ip~~l~ 87 (660)
.+.++|.||+|+|||.++-.+..
T Consensus 113 ~nplfi~G~~GlGKTHLl~Aign 135 (408)
T COG0593 113 YNPLFIYGGVGLGKTHLLQAIGN 135 (408)
T ss_pred CCcEEEECCCCCCHHHHHHHHHH
Confidence 56799999999999966654433
No 426
>cd01121 Sms Sms (bacterial radA) DNA repair protein. This protein is not related to archael radA any more than is to other RecA-like NTPases. Sms has a role in recombination and recombinational repair and is responsible for the stabilization or processing of branched DNA molecules.
Probab=93.34 E-value=0.17 Score=53.57 Aligned_cols=41 Identities=24% Similarity=0.370 Sum_probs=31.4
Q ss_pred HhcCCEEEEEcCCCCcHHHHHHHHHHhccccCCCeEEEEeCc
Q 006122 62 VETHATTIIVGETGSGKTTQIPQYLKEAGWADGGRVIACTQP 103 (660)
Q Consensus 62 l~~~~~vii~apTGsGKT~~ip~~l~~~~~~~~~~~i~v~p~ 103 (660)
+..+..++|.|++|+|||+++-+++..... .+.+++|++-.
T Consensus 79 i~~GslvLI~G~pG~GKStLllq~a~~~a~-~g~~VlYvs~E 119 (372)
T cd01121 79 LVPGSVILIGGDPGIGKSTLLLQVAARLAK-RGGKVLYVSGE 119 (372)
T ss_pred ccCCeEEEEEeCCCCCHHHHHHHHHHHHHh-cCCeEEEEECC
Confidence 455789999999999999999888776542 34567777654
No 427
>PRK06305 DNA polymerase III subunits gamma and tau; Validated
Probab=93.33 E-value=0.56 Score=51.21 Aligned_cols=33 Identities=21% Similarity=0.278 Sum_probs=23.2
Q ss_pred HHHHHHhcC---CEEEEEcCCCCcHHHHHHHHHHhc
Q 006122 57 AILYLVETH---ATTIIVGETGSGKTTQIPQYLKEA 89 (660)
Q Consensus 57 ~i~~~l~~~---~~vii~apTGsGKT~~ip~~l~~~ 89 (660)
.+..++..+ +.+++.||.|+|||+.+-.+....
T Consensus 28 ~L~~~i~~~~i~ha~Lf~Gp~G~GKtt~A~~lAk~l 63 (451)
T PRK06305 28 VLKNALRFNRAAHAYLFSGIRGTGKTTLARIFAKAL 63 (451)
T ss_pred HHHHHHHcCCCceEEEEEcCCCCCHHHHHHHHHHHh
Confidence 344555554 357899999999998876665543
No 428
>TIGR03877 thermo_KaiC_1 KaiC domain protein, Ph0284 family. Members of this family contain a single copy of the KaiC domain (pfam06745) that occurs in two copies of the circadian clock protein kinase KaiC itself. Members occur primarily in thermophilic archaea and in Thermotoga.
Probab=93.32 E-value=0.09 Score=52.16 Aligned_cols=41 Identities=20% Similarity=0.258 Sum_probs=32.3
Q ss_pred HhcCCEEEEEcCCCCcHHHHHHHHHHhccccCCCeEEEEeCc
Q 006122 62 VETHATTIIVGETGSGKTTQIPQYLKEAGWADGGRVIACTQP 103 (660)
Q Consensus 62 l~~~~~vii~apTGsGKT~~ip~~l~~~~~~~~~~~i~v~p~ 103 (660)
+..+..++|.||+|||||++.-+++.+.. ..+.++++++-.
T Consensus 18 ~~~gs~~lI~G~pGsGKT~la~~~l~~~~-~~ge~~lyvs~e 58 (237)
T TIGR03877 18 IPERNVVLLSGGPGTGKSIFSQQFLWNGL-QMGEPGIYVALE 58 (237)
T ss_pred CcCCeEEEEEcCCCCCHHHHHHHHHHHHH-HcCCcEEEEEee
Confidence 34578999999999999999988888764 346667777744
No 429
>COG4626 Phage terminase-like protein, large subunit [General function prediction only]
Probab=93.31 E-value=0.76 Score=50.04 Aligned_cols=148 Identities=12% Similarity=0.108 Sum_probs=80.1
Q ss_pred CCCcHHHHHHHHHHHhc----------CCEEEEEcCCCCcHHHHHHHHHHhc---cccCCCeEEEEeCchHHHHHHH--H
Q 006122 48 RLPVYKYRTAILYLVET----------HATTIIVGETGSGKTTQIPQYLKEA---GWADGGRVIACTQPRRLAVQAV--A 112 (660)
Q Consensus 48 ~lPi~~~~~~i~~~l~~----------~~~vii~apTGsGKT~~ip~~l~~~---~~~~~~~~i~v~p~r~la~~~~--~ 112 (660)
.+++.++|+-|+.+|.+ -...+|.-|-+-|||+++..+.... .+..+....++++....+.... +
T Consensus 59 p~~l~PwQkFiia~l~G~~~k~T~~rrf~e~fI~v~RkngKt~l~A~i~~~~~l~~~~~~~~~~i~A~s~~qa~~~F~~a 138 (546)
T COG4626 59 PESLEPWQKFIVAALFGFYDKQTGIRRFKEAFIFIPRKNGKSTLAAGIMMTALLLNWRSGAGIYILAPSVEQAANSFNPA 138 (546)
T ss_pred ccccchHHHHHHHHHhceeecCCCceEEEEEEEEEecCCchHHHHHHHHHHHHHhhhhcCCcEEEEeccHHHHHHhhHHH
Confidence 56789999999999862 2457888999999998877443322 2234555667777776665522 3
Q ss_pred HHHHHHhCCeeeeEEeeeeeccccCCCCCceEEEechHHHHHHHhcCC---CCCCCcEEEEeCCCcCCcChhHHHHHHHH
Q 006122 113 SRVAEEMGVKVGEEVGYTIRFEDFTNKDLTAIKFLTDGVLLREMMDDP---LLTKYSVIMVDEAHERSISTDILLGLLKK 189 (660)
Q Consensus 113 ~~~~~~~~~~~~~~vg~~~~~~~~~~~~~~~I~v~T~~~ll~~l~~~~---~l~~~~~iIiDE~Her~~~~d~ll~~l~~ 189 (660)
+....... .......++ .....|.+.-....++.+..++ .-.+..+.|+||.|+..-.. -+...++.
T Consensus 139 r~mv~~~~-~l~~~~~~q--------~~s~~i~~~~~~s~ik~~aa~~~~~Dg~~~~~~I~DEih~f~~~~-~~~~~~~~ 208 (546)
T COG4626 139 RDMVKRDD-DLRDLCNVQ--------THSRTITHRKTDSTIKAVAADPNTVDGLNSVGAIIDELHLFGKQE-DMYSEAKG 208 (546)
T ss_pred HHHHHhCc-chhhhhccc--------cceeEEEecccceeeeeeccCCCcccCCCcceEEEehhhhhcCHH-HHHHHHHh
Confidence 32222221 111111111 1011122222222333333332 24567899999999654332 22333333
Q ss_pred HHHhcCCceEEEeecc
Q 006122 190 IQRCRSDLRLIISSAT 205 (660)
Q Consensus 190 ~~~~~~~~kii~~SAT 205 (660)
-+..+++..++..|-.
T Consensus 209 g~~ar~~~l~~~ITT~ 224 (546)
T COG4626 209 GLGARPEGLVVYITTS 224 (546)
T ss_pred hhccCcCceEEEEecC
Confidence 3346677777777753
No 430
>PRK10917 ATP-dependent DNA helicase RecG; Provisional
Probab=93.31 E-value=0.23 Score=57.32 Aligned_cols=79 Identities=13% Similarity=0.195 Sum_probs=67.1
Q ss_pred CCCcEEEEcCCHHHHHHHHHHHHHHhhhccCCCCCeEEEEccCCCCHHHHhhhcCCCCCCCcEEEEeCCC-cccccCCCC
Q 006122 275 PPGDILVFLTGQDDIDATIQLLTEEARTSKKNSSGLIILPLYSGLSRAEQEQVFSPTPRGKRKVVISTNI-AETSLTLEG 353 (660)
Q Consensus 275 ~~~~iLVF~~~~~~i~~l~~~L~~~~~~~~~~~~~~~v~~lh~~l~~~~r~~v~~~f~~g~~~vlvaT~i-~e~Gidip~ 353 (660)
.+.+++|.+||+.=+...++.+.+.+.. .++.+..+||+++..+|..+++...+|...|+|+|.. +...+.+.+
T Consensus 309 ~g~q~lilaPT~~LA~Q~~~~l~~l~~~-----~~i~v~ll~G~~~~~~r~~~~~~l~~g~~~IvVgT~~ll~~~v~~~~ 383 (681)
T PRK10917 309 AGYQAALMAPTEILAEQHYENLKKLLEP-----LGIRVALLTGSLKGKERREILEAIASGEADIVIGTHALIQDDVEFHN 383 (681)
T ss_pred cCCeEEEEeccHHHHHHHHHHHHHHHhh-----cCcEEEEEcCCCCHHHHHHHHHHHhCCCCCEEEchHHHhcccchhcc
Confidence 4567999999999999999998887532 2578999999999999999999999999999999974 555678888
Q ss_pred eEEEE
Q 006122 354 IVYVV 358 (660)
Q Consensus 354 v~~VI 358 (660)
+.+||
T Consensus 384 l~lvV 388 (681)
T PRK10917 384 LGLVI 388 (681)
T ss_pred cceEE
Confidence 88876
No 431
>cd01128 rho_factor Transcription termination factor rho is a bacterial ATP-dependent RNA/DNA helicase. It is a homohexamer. Each monomer consists of an N-terminal domain of the OB fold, which is responsible for binding to cysteine rich nucleotides. This alignment is of the C-terminal ATP binding domain.
Probab=93.31 E-value=0.096 Score=52.14 Aligned_cols=45 Identities=16% Similarity=0.134 Sum_probs=29.1
Q ss_pred HhcCCEEEEEcCCCCcHHHHHHHHHHhccccC-CCe-EEEEeCchHH
Q 006122 62 VETHATTIIVGETGSGKTTQIPQYLKEAGWAD-GGR-VIACTQPRRL 106 (660)
Q Consensus 62 l~~~~~vii~apTGsGKT~~ip~~l~~~~~~~-~~~-~i~v~p~r~l 106 (660)
+..++.++|.||.|+||||++-.+........ +.. .++++..|..
T Consensus 13 i~~Gqr~~I~G~~G~GKTTLlr~I~n~l~~~~fdv~~~v~vI~er~~ 59 (249)
T cd01128 13 IGKGQRGLIVAPPKAGKTTLLQSIANAITKNHPEVYLIVLLIDERPE 59 (249)
T ss_pred cCCCCEEEEECCCCCCHHHHHHHHHhccccccCCeEEEEEEccCCCc
Confidence 46789999999999999988866554432221 123 3344666434
No 432
>cd03244 ABCC_MRP_domain2 Domain 2 of the ABC subfamily C. This family is also known as MRP (mulrtidrug resisitance-associated protein). Some of the MRP members have five additional transmembrane segments in their N-terminus, but the function of these additional membrane-spanning domains is not clear. The MRP was found in the multidrug-resistance lung cancer cell in which p-glycoprotein was not overexpressed. MRP exports glutathione by drug stimulation, as well as, certain substrates in conjugated forms with anions, such as glutathione, glucuronate, and sulfate.
Probab=93.28 E-value=0.081 Score=51.84 Aligned_cols=27 Identities=30% Similarity=0.466 Sum_probs=22.5
Q ss_pred HhcCCEEEEEcCCCCcHHHHHHHHHHh
Q 006122 62 VETHATTIIVGETGSGKTTQIPQYLKE 88 (660)
Q Consensus 62 l~~~~~vii~apTGsGKT~~ip~~l~~ 88 (660)
+..++.+.|.||.||||||++-.+.-.
T Consensus 27 i~~Ge~~~i~G~nGsGKSTLl~~l~G~ 53 (221)
T cd03244 27 IKPGEKVGIVGRTGSGKSSLLLALFRL 53 (221)
T ss_pred ECCCCEEEEECCCCCCHHHHHHHHHcC
Confidence 357899999999999999988766543
No 433
>PF03237 Terminase_6: Terminase-like family; InterPro: IPR004921 The terminase is a component of the molecular motor that translocates genomic DNA into empty capsids during DNA packaging []. The large subunit heterodimerises with the small terminase protein, which is docked on the capsid portal protein. The latter forms a ring through which genomic DNA is translocated into the capsid. The terminase protein may have or induce an endonuclease activity to cleave DNA after encapsidation. This entry represents a family of terminase large subunits found in a variety of the Caudovirales and prophage regions of bacterial genomes. Homologues are also found in Gene Transfer Agents (GTA) [], including ORFg2 (RCAP_rcc01683) of the GTA of Rhodobacter capsulatus (Rhodopseudomonas capsulata) [see Fig.1, in ].; PDB: 2O0K_A 3CPE_A 2O0J_A 2O0H_A 3C6H_A 3C6A_A.
Probab=93.28 E-value=0.95 Score=47.88 Aligned_cols=140 Identities=18% Similarity=0.157 Sum_probs=59.8
Q ss_pred EEEcCCCCcHHHHHHHHHHhccccCCC-eEEEEeCchHHHHHHHHHHHH---HHhCCeeeeEEeeeeecccc-CCCCCce
Q 006122 69 IIVGETGSGKTTQIPQYLKEAGWADGG-RVIACTQPRRLAVQAVASRVA---EEMGVKVGEEVGYTIRFEDF-TNKDLTA 143 (660)
Q Consensus 69 ii~apTGsGKT~~ip~~l~~~~~~~~~-~~i~v~p~r~la~~~~~~~~~---~~~~~~~~~~vg~~~~~~~~-~~~~~~~ 143 (660)
++.++.|+|||+++...+......... ..++++++...+...+.+... ..... .... .+....+.. .......
T Consensus 1 ~i~~~r~~GKT~~~~~~~~~~~~~~~~~~~vi~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~-~~~~~~~~~~~~~nG~~ 78 (384)
T PF03237_consen 1 LINGGRGSGKTTLIAIWFLWWALTRPPGRRVIIASTYRQARDIFGRFWKGIIELLPS-WFEI-KFNEWNDRKIILPNGSR 78 (384)
T ss_dssp -EEE-SSS-HHHHHHHHHHHHHHSSSS--EEEEEESSHHHHHHHHHHHHHHHHTS-T-TTS---EEEE-SSEEEETTS-E
T ss_pred CCcCCccccHHHHHHHHHHHHHhhCCCCcEEEEecCHHHHHHHHHHhHHHHHHHHHH-hcCc-ccccCCCCcEEecCceE
Confidence 578999999998876655544444443 566666888777775443222 11111 1110 111000110 0021345
Q ss_pred EEEechHH--HHHHHhcCCCCCCCcEEEEeCCCcCCcChhHHHHHHHHHHHhcCCceEEEeeccc-chHHHHHHhh
Q 006122 144 IKFLTDGV--LLREMMDDPLLTKYSVIMVDEAHERSISTDILLGLLKKIQRCRSDLRLIISSATI-EAKSMSAFFH 216 (660)
Q Consensus 144 I~v~T~~~--ll~~l~~~~~l~~~~~iIiDE~Her~~~~d~ll~~l~~~~~~~~~~kii~~SAT~-~~~~~~~~~~ 216 (660)
|.+.+.+. -...+.. ..++.|++||+-. ...+.....+............+..|-|. ....+..++.
T Consensus 79 i~~~~~~~~~~~~~~~G----~~~~~i~iDE~~~--~~~~~~~~~~~~~~~~~~~~~~~~~s~p~~~~~~~~~~~~ 148 (384)
T PF03237_consen 79 IQFRGADSPDSGDNIRG----FEYDLIIIDEAAK--VPDDAFSELIRRLRATWGGSIRMYISTPPNPGGWFYEIFQ 148 (384)
T ss_dssp EEEES-----SHHHHHT----S--SEEEEESGGG--STTHHHHHHHHHHHHCSTT--EEEEEE---SSSHHHHHHH
T ss_pred EEEeccccccccccccc----cccceeeeeeccc--CchHHHHHHHHhhhhcccCcceEEeecCCCCCCceeeeee
Confidence 66666432 1122222 4688999999762 22233444444444444333333555555 3333444443
No 434
>PRK11174 cysteine/glutathione ABC transporter membrane/ATP-binding component; Reviewed
Probab=93.28 E-value=0.077 Score=60.40 Aligned_cols=28 Identities=25% Similarity=0.381 Sum_probs=23.5
Q ss_pred HhcCCEEEEEcCCCCcHHHHHHHHHHhc
Q 006122 62 VETHATTIIVGETGSGKTTQIPQYLKEA 89 (660)
Q Consensus 62 l~~~~~vii~apTGsGKT~~ip~~l~~~ 89 (660)
+..|+.+.|+||+||||||++-.++...
T Consensus 373 i~~G~~vaIvG~SGsGKSTL~~lL~g~~ 400 (588)
T PRK11174 373 LPAGQRIALVGPSGAGKTSLLNALLGFL 400 (588)
T ss_pred EcCCCEEEEECCCCCCHHHHHHHHhcCC
Confidence 3688999999999999999988766544
No 435
>PF02367 UPF0079: Uncharacterised P-loop hydrolase UPF0079; InterPro: IPR003442 This group consists of bacterial proteins, which contain a P-loop. They are probably essential to bacteria as members are found in all genomes so far sequenced and no equivalent genes have been found in the archaea and eukaryotes, suggesting the protein may be involved in cell wall biosynthesis. The sequence of YjeE, from Haemophilus influenzae, has been determined to 1.7-A resolution. The protein has a nucleotide-binding fold with a four-stranded parallel beta-sheet flanked by antiparallel beta-strands on each side. The topology of the beta-sheet is unique among P-loop proteins and has features of different families of enzymes. ADP has been shown to bind to the P-loop in the presence of Mg2+ and ATPase activity has been confirmed by kinetic measurements [].; PDB: 1HTW_A 1FL9_A.
Probab=93.27 E-value=0.13 Score=44.97 Aligned_cols=36 Identities=19% Similarity=0.401 Sum_probs=29.2
Q ss_pred HHHHHHHHhcCCEEEEEcCCCCcHHHHHHHHHHhcc
Q 006122 55 RTAILYLVETHATTIIVGETGSGKTTQIPQYLKEAG 90 (660)
Q Consensus 55 ~~~i~~~l~~~~~vii~apTGsGKT~~ip~~l~~~~ 90 (660)
-+.+.+.+..++++++.|+-|+||||++-.++...+
T Consensus 5 a~~l~~~l~~g~vi~L~GdLGaGKTtf~r~l~~~lg 40 (123)
T PF02367_consen 5 AKKLAQILKPGDVILLSGDLGAGKTTFVRGLARALG 40 (123)
T ss_dssp HHHHHHHHSS-EEEEEEESTTSSHHHHHHHHHHHTT
T ss_pred HHHHHHhCCCCCEEEEECCCCCCHHHHHHHHHHHcC
Confidence 456777788899999999999999999887776654
No 436
>cd03232 ABC_PDR_domain2 The pleiotropic drug resistance-like (PDR) family of ATP-binding cassette (ABC) transporters. PDR is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. This PDR subfamily represents domain I of its (ABC-IM)2 organization. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds including sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=93.26 E-value=0.24 Score=47.34 Aligned_cols=25 Identities=36% Similarity=0.543 Sum_probs=21.6
Q ss_pred HhcCCEEEEEcCCCCcHHHHHHHHH
Q 006122 62 VETHATTIIVGETGSGKTTQIPQYL 86 (660)
Q Consensus 62 l~~~~~vii~apTGsGKT~~ip~~l 86 (660)
+..++.+.|.||.||||||++-.+.
T Consensus 30 i~~Ge~~~l~G~nGsGKSTLl~~l~ 54 (192)
T cd03232 30 VKPGTLTALMGESGAGKTTLLDVLA 54 (192)
T ss_pred EeCCcEEEEECCCCCCHHHHHHHHh
Confidence 3578899999999999999887665
No 437
>PRK09544 znuC high-affinity zinc transporter ATPase; Reviewed
Probab=93.22 E-value=0.11 Score=51.98 Aligned_cols=26 Identities=23% Similarity=0.417 Sum_probs=22.0
Q ss_pred HhcCCEEEEEcCCCCcHHHHHHHHHH
Q 006122 62 VETHATTIIVGETGSGKTTQIPQYLK 87 (660)
Q Consensus 62 l~~~~~vii~apTGsGKT~~ip~~l~ 87 (660)
+..++.+.|.||+||||||++-.+.-
T Consensus 27 i~~Ge~~~I~G~NGsGKSTLl~~i~G 52 (251)
T PRK09544 27 LKPGKILTLLGPNGAGKSTLVRVVLG 52 (251)
T ss_pred EcCCcEEEEECCCCCCHHHHHHHHhC
Confidence 35789999999999999998876654
No 438
>PRK11054 helD DNA helicase IV; Provisional
Probab=93.21 E-value=0.28 Score=56.23 Aligned_cols=72 Identities=18% Similarity=0.328 Sum_probs=46.3
Q ss_pred hcCCCcHHHHHHHHHHHhcCCEEEEEcCCCCcHHHHHHH---HHHhccccCCCeEEEEeCchHHHHHHHHHHHHHHhC
Q 006122 46 RQRLPVYKYRTAILYLVETHATTIIVGETGSGKTTQIPQ---YLKEAGWADGGRVIACTQPRRLAVQAVASRVAEEMG 120 (660)
Q Consensus 46 ~~~lPi~~~~~~i~~~l~~~~~vii~apTGsGKT~~ip~---~l~~~~~~~~~~~i~v~p~r~la~~~~~~~~~~~~~ 120 (660)
-...|+...|.+++.. ..+.++|.|..|||||+.+-. ++..........+++++-+++. +..+.+|+....+
T Consensus 192 ~e~~~L~~~Q~~av~~--~~~~~lV~agaGSGKT~vl~~r~ayLl~~~~~~~~~IL~ltft~~A-A~em~eRL~~~lg 266 (684)
T PRK11054 192 VESSPLNPSQARAVVN--GEDSLLVLAGAGSGKTSVLVARAGWLLARGQAQPEQILLLAFGRQA-AEEMDERIRERLG 266 (684)
T ss_pred ccCCCCCHHHHHHHhC--CCCCeEEEEeCCCCHHHHHHHHHHHHHHhCCCCHHHeEEEeccHHH-HHHHHHHHHHhcC
Confidence 3446888888877753 345578999999999955532 2333322334456777766654 5677777776553
No 439
>PRK13695 putative NTPase; Provisional
Probab=93.21 E-value=1.6 Score=40.83 Aligned_cols=22 Identities=32% Similarity=0.347 Sum_probs=17.8
Q ss_pred EEEEEcCCCCcHHHHHHHHHHh
Q 006122 67 TTIIVGETGSGKTTQIPQYLKE 88 (660)
Q Consensus 67 ~vii~apTGsGKT~~ip~~l~~ 88 (660)
.++++|++|+||||++-.+...
T Consensus 2 ~i~ltG~~G~GKTTll~~i~~~ 23 (174)
T PRK13695 2 KIGITGPPGVGKTTLVLKIAEL 23 (174)
T ss_pred EEEEECCCCCCHHHHHHHHHHH
Confidence 3789999999999988865543
No 440
>PF06745 KaiC: KaiC; InterPro: IPR014774 This entry represents a domain within bacterial and archaeal proteins, most of which are hypothetical. More than one copy is sometimes found in each protein in this entry. These include KaiC, which is one of the Kai proteins among which direct protein-protein association may be a critical process in the generation of circadian rhythms in cyanobacteria []. The circadian clock protein KaiC, is encoded in the kaiABC operon that controls circadian rhythms and may be universal in Cyanobacteria. Each member contains two copies of this domain, which is also found in other proteins. KaiC performs autophosphorylation and acts as its own transcriptional repressor. RadA/Sms is a highly conserved eubacterial protein that shares sequence similarity with both RecA strand transferase and lon protease. The RadA/Sms family are probable ATP-dependent proteases involved in both DNA repair and degradation of proteins, peptides, glycopeptides. They are classified in as non-peptidase homologues and unassigned peptidases in MEROPS peptidase family S16 (lon protease family, clan SJ). RadA/Sms is involved in recombination and recombinational repair, most likely involving the stabilisation or processing of branched DNA molecules or blocked replication forks because of its genetic redundancy with RecG and RuvABC [].; PDB: 2W0M_A 2ZTS_C 4DUG_B 3K0E_B 3K09_B 3S1A_E 3JZM_E 2GBL_B 3DVL_A 1TF7_C ....
Probab=93.21 E-value=0.079 Score=52.14 Aligned_cols=40 Identities=30% Similarity=0.335 Sum_probs=30.1
Q ss_pred hcCCEEEEEcCCCCcHHHHHHHHHHhccccCCCeEEEEeC
Q 006122 63 ETHATTIIVGETGSGKTTQIPQYLKEAGWADGGRVIACTQ 102 (660)
Q Consensus 63 ~~~~~vii~apTGsGKT~~ip~~l~~~~~~~~~~~i~v~p 102 (660)
..+..++|.|++|+|||++.-+++.+.....+.++++++-
T Consensus 17 p~gs~~li~G~~GsGKT~l~~q~l~~~~~~~ge~vlyvs~ 56 (226)
T PF06745_consen 17 PKGSVVLISGPPGSGKTTLALQFLYNGLKNFGEKVLYVSF 56 (226)
T ss_dssp ETTSEEEEEESTTSSHHHHHHHHHHHHHHHHT--EEEEES
T ss_pred CCCcEEEEEeCCCCCcHHHHHHHHHHhhhhcCCcEEEEEe
Confidence 3578999999999999999889888764431556777764
No 441
>cd03251 ABCC_MsbA MsbA is an essential ABC transporter, closely related to eukaryotic MDR proteins. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=93.20 E-value=0.14 Score=50.65 Aligned_cols=27 Identities=30% Similarity=0.429 Sum_probs=22.3
Q ss_pred HhcCCEEEEEcCCCCcHHHHHHHHHHh
Q 006122 62 VETHATTIIVGETGSGKTTQIPQYLKE 88 (660)
Q Consensus 62 l~~~~~vii~apTGsGKT~~ip~~l~~ 88 (660)
+..++.+.|.||.||||||++-.+.-.
T Consensus 25 i~~Ge~~~i~G~nGsGKSTLl~~l~Gl 51 (234)
T cd03251 25 IPAGETVALVGPSGSGKSTLVNLIPRF 51 (234)
T ss_pred EcCCCEEEEECCCCCCHHHHHHHHhcc
Confidence 457899999999999999988766543
No 442
>TIGR03608 L_ocin_972_ABC putative bacteriocin export ABC transporter, lactococcin 972 group. A gene pair with a fairly wide distribution consists of a polypeptide related to the lactococcin 972 (see TIGR01653) and multiple-membrane-spanning putative immunity protein (see TIGR01654). This model represents a small clade within the ABC transporters that regularly are found adjacent to these bacteriocin system gene pairs and are likely serve as export proteins.
Probab=93.17 E-value=0.58 Score=45.13 Aligned_cols=27 Identities=33% Similarity=0.390 Sum_probs=22.4
Q ss_pred HhcCCEEEEEcCCCCcHHHHHHHHHHh
Q 006122 62 VETHATTIIVGETGSGKTTQIPQYLKE 88 (660)
Q Consensus 62 l~~~~~vii~apTGsGKT~~ip~~l~~ 88 (660)
+..++.+.|.||+||||||++-.+.-.
T Consensus 21 i~~Ge~~~i~G~nGsGKSTLl~~l~G~ 47 (206)
T TIGR03608 21 IEKGKMYAIIGESGSGKSTLLNIIGLL 47 (206)
T ss_pred EeCCcEEEEECCCCCCHHHHHHHHhcC
Confidence 357889999999999999988766543
No 443
>PRK05580 primosome assembly protein PriA; Validated
Probab=93.17 E-value=0.15 Score=58.69 Aligned_cols=74 Identities=23% Similarity=0.272 Sum_probs=61.7
Q ss_pred CCcEEEEcCCHHHHHHHHHHHHHHhhhccCCCCCeEEEEccCCCCHHHHhhhcCCCCCCCcEEEEeCCCcccccCCCCeE
Q 006122 276 PGDILVFLTGQDDIDATIQLLTEEARTSKKNSSGLIILPLYSGLSRAEQEQVFSPTPRGKRKVVISTNIAETSLTLEGIV 355 (660)
Q Consensus 276 ~~~iLVF~~~~~~i~~l~~~L~~~~~~~~~~~~~~~v~~lh~~l~~~~r~~v~~~f~~g~~~vlvaT~i~e~Gidip~v~ 355 (660)
++++||.+|+++-+.++.+.+++.+ +..+..+||+++..+|.+.+....+|..+|+|+|..+-. +.+.++.
T Consensus 190 g~~vLvLvPt~~L~~Q~~~~l~~~f--------g~~v~~~~s~~s~~~r~~~~~~~~~g~~~IVVgTrsal~-~p~~~l~ 260 (679)
T PRK05580 190 GKQALVLVPEIALTPQMLARFRARF--------GAPVAVLHSGLSDGERLDEWRKAKRGEAKVVIGARSALF-LPFKNLG 260 (679)
T ss_pred CCeEEEEeCcHHHHHHHHHHHHHHh--------CCCEEEEECCCCHHHHHHHHHHHHcCCCCEEEeccHHhc-ccccCCC
Confidence 5679999999999999999998764 457899999999999999988888999999999974432 5567777
Q ss_pred EEE
Q 006122 356 YVV 358 (660)
Q Consensus 356 ~VI 358 (660)
.||
T Consensus 261 liV 263 (679)
T PRK05580 261 LII 263 (679)
T ss_pred EEE
Confidence 665
No 444
>TIGR01189 ccmA heme ABC exporter, ATP-binding protein CcmA. This model describes the cyt c biogenesis protein encoded by ccmA in bacteria. An exception is, an arabidopsis protein. Quite likely this is encoded by an organelle. Bacterial c-type cytocromes are located on the periplasmic side of the cytoplasmic membrane. Several gene products encoded in a locus designated as 'ccm' are implicated in the transport and assembly of the functional cytochrome C. This cluster includes genes: ccmA;B;C;D;E;F;G and H. The posttranslational pathway includes the transport of heme moiety, the secretion of the apoprotein and the covalent attachment of the heme with the apoprotein. The proteins ccmA and B represent an ABC transporter; ccmC and D participate in heme transfer to ccmE, which function as a periplasmic heme chaperone. The presence of ccmF, G and H is suggested to be obligatory for the final functional assembly of cytochrome c.
Probab=93.16 E-value=0.13 Score=49.32 Aligned_cols=27 Identities=22% Similarity=0.272 Sum_probs=22.3
Q ss_pred HhcCCEEEEEcCCCCcHHHHHHHHHHh
Q 006122 62 VETHATTIIVGETGSGKTTQIPQYLKE 88 (660)
Q Consensus 62 l~~~~~vii~apTGsGKT~~ip~~l~~ 88 (660)
+..++.+.|.||+||||||++-.+.-.
T Consensus 23 i~~Ge~~~i~G~nGsGKSTLl~~l~G~ 49 (198)
T TIGR01189 23 LNAGEALQVTGPNGIGKTTLLRILAGL 49 (198)
T ss_pred EcCCcEEEEECCCCCCHHHHHHHHhCC
Confidence 457899999999999999988765543
No 445
>COG2874 FlaH Predicted ATPases involved in biogenesis of archaeal flagella [Cell motility and secretion / Intracellular trafficking and secretion]
Probab=93.15 E-value=0.72 Score=43.98 Aligned_cols=132 Identities=17% Similarity=0.210 Sum_probs=71.5
Q ss_pred CCEEEEEcCCCCcHHHHHHHHHHhccccCCCeEEEEeCchHHHHHHHHHHHHHHhCCee--eeEEe----eeeeccccCC
Q 006122 65 HATTIIVGETGSGKTTQIPQYLKEAGWADGGRVIACTQPRRLAVQAVASRVAEEMGVKV--GEEVG----YTIRFEDFTN 138 (660)
Q Consensus 65 ~~~vii~apTGsGKT~~ip~~l~~~~~~~~~~~i~v~p~r~la~~~~~~~~~~~~~~~~--~~~vg----~~~~~~~~~~ 138 (660)
+..++|.|+.|+|||.+..++++-.. ..+.++.+++-. .....+.+.. +..+..+ --..| +.+..+..
T Consensus 28 GsL~lIEGd~~tGKSvLsqr~~YG~L-~~g~~v~yvsTe--~T~refi~qm-~sl~ydv~~~~l~G~l~~~~~~~~~~-- 101 (235)
T COG2874 28 GSLILIEGDNGTGKSVLSQRFAYGFL-MNGYRVTYVSTE--LTVREFIKQM-ESLSYDVSDFLLSGRLLFFPVNLEPV-- 101 (235)
T ss_pred CeEEEEECCCCccHHHHHHHHHHHHH-hCCceEEEEEec--hhHHHHHHHH-HhcCCCchHHHhcceeEEEEeccccc--
Confidence 57899999999999977777776553 234444444322 1111111111 1111111 01111 11111100
Q ss_pred CCCceEEEechHHHHHHHhcCCCCCCCcEEEEeCCCcCCcCh--hHHHHHHHHHHHhcCCceEEEeeccc
Q 006122 139 KDLTAIKFLTDGVLLREMMDDPLLTKYSVIMVDEAHERSIST--DILLGLLKKIQRCRSDLRLIISSATI 206 (660)
Q Consensus 139 ~~~~~I~v~T~~~ll~~l~~~~~l~~~~~iIiDE~Her~~~~--d~ll~~l~~~~~~~~~~kii~~SAT~ 206 (660)
..---+...+++.+.+.....+.++||||-......+. +-.+..+..+......-|+|++|+-+
T Consensus 102 ----~~~~~~~~~~L~~l~~~~k~~~~dViIIDSls~~~~~~~~~~vl~fm~~~r~l~d~gKvIilTvhp 167 (235)
T COG2874 102 ----NWGRRSARKLLDLLLEFIKRWEKDVIIIDSLSAFATYDSEDAVLNFMTFLRKLSDLGKVIILTVHP 167 (235)
T ss_pred ----ccChHHHHHHHHHHHhhHHhhcCCEEEEecccHHhhcccHHHHHHHHHHHHHHHhCCCEEEEEeCh
Confidence 00011234566666665557788999999987433222 34566666676666677899999876
No 446
>PRK11160 cysteine/glutathione ABC transporter membrane/ATP-binding component; Reviewed
Probab=93.14 E-value=0.12 Score=58.58 Aligned_cols=28 Identities=21% Similarity=0.413 Sum_probs=23.5
Q ss_pred HhcCCEEEEEcCCCCcHHHHHHHHHHhc
Q 006122 62 VETHATTIIVGETGSGKTTQIPQYLKEA 89 (660)
Q Consensus 62 l~~~~~vii~apTGsGKT~~ip~~l~~~ 89 (660)
+..++.+.|+||+||||||++-.+....
T Consensus 363 i~~G~~~aivG~sGsGKSTL~~ll~g~~ 390 (574)
T PRK11160 363 IKAGEKVALLGRTGCGKSTLLQLLTRAW 390 (574)
T ss_pred ECCCCEEEEECCCCCCHHHHHHHHhcCC
Confidence 4688999999999999999987766543
No 447
>cd03258 ABC_MetN_methionine_transporter MetN (also known as YusC) is an ABC-type transporter encoded by metN of the metNPQ operon in Bacillus subtilis that is involved in methionine transport. Other members of this system include the MetP permease and the MetQ substrate binding protein. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=93.09 E-value=0.21 Score=49.42 Aligned_cols=27 Identities=30% Similarity=0.284 Sum_probs=22.5
Q ss_pred HhcCCEEEEEcCCCCcHHHHHHHHHHh
Q 006122 62 VETHATTIIVGETGSGKTTQIPQYLKE 88 (660)
Q Consensus 62 l~~~~~vii~apTGsGKT~~ip~~l~~ 88 (660)
+..++.+.|.||+||||||++-.+.-.
T Consensus 28 i~~Ge~~~l~G~nGsGKSTLl~~l~G~ 54 (233)
T cd03258 28 VPKGEIFGIIGRSGAGKSTLIRCINGL 54 (233)
T ss_pred EcCCCEEEEECCCCCCHHHHHHHHhCC
Confidence 467899999999999999988766543
No 448
>TIGR00595 priA primosomal protein N'. All proteins in this family for which functions are known are components of the primosome which is involved in replication, repair, and recombination.This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=93.05 E-value=0.21 Score=55.27 Aligned_cols=75 Identities=25% Similarity=0.255 Sum_probs=61.7
Q ss_pred CCCcEEEEcCCHHHHHHHHHHHHHHhhhccCCCCCeEEEEccCCCCHHHHhhhcCCCCCCCcEEEEeCCCcccccCCCCe
Q 006122 275 PPGDILVFLTGQDDIDATIQLLTEEARTSKKNSSGLIILPLYSGLSRAEQEQVFSPTPRGKRKVVISTNIAETSLTLEGI 354 (660)
Q Consensus 275 ~~~~iLVF~~~~~~i~~l~~~L~~~~~~~~~~~~~~~v~~lh~~l~~~~r~~v~~~f~~g~~~vlvaT~i~e~Gidip~v 354 (660)
.++++||.+|++.-+.++++.|++.+ +..+..+||+++..+|.+++....+|..+|||+|..+-. ..++++
T Consensus 24 ~g~~vLvlvP~i~L~~Q~~~~l~~~f--------~~~v~vlhs~~~~~er~~~~~~~~~g~~~IVVGTrsalf-~p~~~l 94 (505)
T TIGR00595 24 LGKSVLVLVPEIALTPQMIQRFKYRF--------GSQVAVLHSGLSDSEKLQAWRKVKNGEILVVIGTRSALF-LPFKNL 94 (505)
T ss_pred cCCeEEEEeCcHHHHHHHHHHHHHHh--------CCcEEEEECCCCHHHHHHHHHHHHcCCCCEEECChHHHc-CcccCC
Confidence 45679999999999999999998764 456888999999999999988888999999999975432 456777
Q ss_pred EEEE
Q 006122 355 VYVV 358 (660)
Q Consensus 355 ~~VI 358 (660)
..||
T Consensus 95 ~lII 98 (505)
T TIGR00595 95 GLII 98 (505)
T ss_pred CEEE
Confidence 7665
No 449
>PRK08699 DNA polymerase III subunit delta'; Validated
Probab=93.00 E-value=0.88 Score=47.31 Aligned_cols=56 Identities=16% Similarity=0.215 Sum_probs=36.3
Q ss_pred EEEechHHHHHHHhcCCCCCCCcEEEEeCCCcCCcChhHHHHHHHHHHHhcCCceEEE
Q 006122 144 IKFLTDGVLLREMMDDPLLTKYSVIMVDEAHERSISTDILLGLLKKIQRCRSDLRLII 201 (660)
Q Consensus 144 I~v~T~~~ll~~l~~~~~l~~~~~iIiDE~Her~~~~d~ll~~l~~~~~~~~~~kii~ 201 (660)
|.|-.-..+.+.+...+......++|+|++| .++......+++.+.....+..+|+
T Consensus 93 I~id~iR~l~~~~~~~p~~~~~kV~iiEp~~--~Ld~~a~naLLk~LEep~~~~~~Il 148 (325)
T PRK08699 93 IKIDAVREIIDNVYLTSVRGGLRVILIHPAE--SMNLQAANSLLKVLEEPPPQVVFLL 148 (325)
T ss_pred cCHHHHHHHHHHHhhCcccCCceEEEEechh--hCCHHHHHHHHHHHHhCcCCCEEEE
Confidence 4343344455666666777889999999999 4566677777776655444444444
No 450
>PRK05564 DNA polymerase III subunit delta'; Validated
Probab=92.94 E-value=0.64 Score=48.24 Aligned_cols=49 Identities=16% Similarity=0.280 Sum_probs=30.6
Q ss_pred HHHHhcCCCCCCCcEEEEeCCCcCCcChhHHHHHHHHHHHhcCCceEEEee
Q 006122 153 LREMMDDPLLTKYSVIMVDEAHERSISTDILLGLLKKIQRCRSDLRLIISS 203 (660)
Q Consensus 153 l~~l~~~~~l~~~~~iIiDE~Her~~~~d~ll~~l~~~~~~~~~~kii~~S 203 (660)
...+...|...+..++||||+|. .+......+++.+..-.++..+|+.+
T Consensus 82 ~~~~~~~p~~~~~kv~iI~~ad~--m~~~a~naLLK~LEepp~~t~~il~~ 130 (313)
T PRK05564 82 IEEVNKKPYEGDKKVIIIYNSEK--MTEQAQNAFLKTIEEPPKGVFIILLC 130 (313)
T ss_pred HHHHhcCcccCCceEEEEechhh--cCHHHHHHHHHHhcCCCCCeEEEEEe
Confidence 33334567778899999999994 34445566666665444444444443
No 451
>PRK10789 putative multidrug transporter membrane\ATP-binding components; Provisional
Probab=92.90 E-value=0.14 Score=57.87 Aligned_cols=27 Identities=30% Similarity=0.385 Sum_probs=22.6
Q ss_pred HhcCCEEEEEcCCCCcHHHHHHHHHHh
Q 006122 62 VETHATTIIVGETGSGKTTQIPQYLKE 88 (660)
Q Consensus 62 l~~~~~vii~apTGsGKT~~ip~~l~~ 88 (660)
+..|+.+.|.||+||||||++-.+...
T Consensus 338 i~~G~~~~ivG~sGsGKSTLl~ll~g~ 364 (569)
T PRK10789 338 LKPGQMLGICGPTGSGKSTLLSLIQRH 364 (569)
T ss_pred ECCCCEEEEECCCCCCHHHHHHHHhcc
Confidence 468999999999999999988766543
No 452
>PRK06871 DNA polymerase III subunit delta'; Validated
Probab=92.88 E-value=0.45 Score=49.29 Aligned_cols=54 Identities=11% Similarity=0.189 Sum_probs=36.9
Q ss_pred HHHHHHHhcCCCCCCCcEEEEeCCCcCCcChhHHHHHHHHHHHhcCCceEEEeecc
Q 006122 150 GVLLREMMDDPLLTKYSVIMVDEAHERSISTDILLGLLKKIQRCRSDLRLIISSAT 205 (660)
Q Consensus 150 ~~ll~~l~~~~~l~~~~~iIiDE~Her~~~~d~ll~~l~~~~~~~~~~kii~~SAT 205 (660)
..+.+.+...+....+.++|||+||. ++.....+++|.+..-.++..+|+.|..
T Consensus 93 R~l~~~~~~~~~~g~~KV~iI~~a~~--m~~~AaNaLLKtLEEPp~~~~fiL~t~~ 146 (325)
T PRK06871 93 REINEKVSQHAQQGGNKVVYIQGAER--LTEAAANALLKTLEEPRPNTYFLLQADL 146 (325)
T ss_pred HHHHHHHhhccccCCceEEEEechhh--hCHHHHHHHHHHhcCCCCCeEEEEEECC
Confidence 34555555666778899999999993 4556777888887665555555554443
No 453
>PRK10436 hypothetical protein; Provisional
Probab=92.86 E-value=0.25 Score=53.82 Aligned_cols=32 Identities=25% Similarity=0.385 Sum_probs=23.0
Q ss_pred HHHHH-hcCCEEEEEcCCCCcHHHHHHHHHHhc
Q 006122 58 ILYLV-ETHATTIIVGETGSGKTTQIPQYLKEA 89 (660)
Q Consensus 58 i~~~l-~~~~~vii~apTGsGKT~~ip~~l~~~ 89 (660)
+..++ ..+..++|+|||||||||.+..++...
T Consensus 210 l~~~~~~~~GliLvtGpTGSGKTTtL~a~l~~~ 242 (462)
T PRK10436 210 FRQALQQPQGLILVTGPTGSGKTVTLYSALQTL 242 (462)
T ss_pred HHHHHHhcCCeEEEECCCCCChHHHHHHHHHhh
Confidence 33344 356689999999999998876555443
No 454
>cd03268 ABC_BcrA_bacitracin_resist The BcrA subfamily represents ABC transporters involved in peptide antibiotic resistance. Bacitracin is a dodecapeptide antibiotic produced by B. licheniformis and B. subtilis. The synthesis of bacitracin is non-ribosomally catalyzed by a multienzyme complex BcrABC. Bacitracin has potent antibiotic activity against gram-positive bacteria. The inhibition of peptidoglycan biosynthesis is the best characterized bacterial effect of bacitracin. The bacitracin resistance of B. licheniformis is mediated by the ABC transporter Bcr which is composed of two identical BcrA ATP-binding subunits and one each of the integral membrane proteins, BcrB and BcrC. B. subtilis cells carrying bcr genes on high-copy number plasmids develop collateral detergent sensitivity, a similar phenomenon in human cells with overexpressed multi-drug resistance P-glycoprotein.
Probab=92.86 E-value=0.15 Score=49.43 Aligned_cols=26 Identities=31% Similarity=0.391 Sum_probs=21.9
Q ss_pred HhcCCEEEEEcCCCCcHHHHHHHHHH
Q 006122 62 VETHATTIIVGETGSGKTTQIPQYLK 87 (660)
Q Consensus 62 l~~~~~vii~apTGsGKT~~ip~~l~ 87 (660)
+..++.+.|.||+||||||++-.+.-
T Consensus 23 i~~G~~~~i~G~nGsGKSTLl~~l~G 48 (208)
T cd03268 23 VKKGEIYGFLGPNGAGKTTTMKIILG 48 (208)
T ss_pred EcCCcEEEEECCCCCCHHHHHHHHhC
Confidence 35789999999999999999876654
No 455
>cd03219 ABC_Mj1267_LivG_branched The Mj1267/LivG ABC transporter subfamily is involved in the transport of the hydrophobic amino acids leucine, isoleucine and valine. MJ1267 is a branched-chain amino acid transporter with 29% similarity to both the LivF and LivG components of the E. coli branched-chain amino acid transporter. MJ1267 contains an insertion from residues 114 to 123 characteristic of LivG (Leucine-Isoleucine-Valine) homologs. The branched-chain amino acid transporter from E. coli comprises a heterodimer of ABCs (LivF and LivG), a heterodimer of six-helix TM domains (LivM and LivH), and one of two alternative soluble periplasmic substrate binding proteins (LivK or LivJ).
Probab=92.84 E-value=0.19 Score=49.81 Aligned_cols=26 Identities=27% Similarity=0.323 Sum_probs=22.1
Q ss_pred HhcCCEEEEEcCCCCcHHHHHHHHHH
Q 006122 62 VETHATTIIVGETGSGKTTQIPQYLK 87 (660)
Q Consensus 62 l~~~~~vii~apTGsGKT~~ip~~l~ 87 (660)
+..++.+.|.||.||||||++-.+.-
T Consensus 23 i~~Ge~~~l~G~nGsGKSTLl~~l~G 48 (236)
T cd03219 23 VRPGEIHGLIGPNGAGKTTLFNLISG 48 (236)
T ss_pred ecCCcEEEEECCCCCCHHHHHHHHcC
Confidence 46789999999999999998876653
No 456
>TIGR01547 phage_term_2 phage terminase, large subunit, PBSX family. This model detects members of a highly divergent family of the large subunit of phage terminase. All members are encoded by phage genomes or within prophage regions of bacterial genomes. This is a distinct family from pfam03354.
Probab=92.84 E-value=0.53 Score=50.64 Aligned_cols=131 Identities=16% Similarity=0.151 Sum_probs=68.9
Q ss_pred CEEEEEcCCCCcHHHHHHHHHHhcccc--CCCeEEEEeCchHHHHHHHHHHHHHHh---CCeeeeEEeeeeecc--ccCC
Q 006122 66 ATTIIVGETGSGKTTQIPQYLKEAGWA--DGGRVIACTQPRRLAVQAVASRVAEEM---GVKVGEEVGYTIRFE--DFTN 138 (660)
Q Consensus 66 ~~vii~apTGsGKT~~ip~~l~~~~~~--~~~~~i~v~p~r~la~~~~~~~~~~~~---~~~~~~~vg~~~~~~--~~~~ 138 (660)
+..++.|..|||||+.+...+...... ++..++++-++..-...++...+.... +... -+..... ....
T Consensus 2 ~~~i~~GgrgSGKS~~~~~~~~~~~~~~~~~~~~~~~r~~~~sl~~sv~~~l~~~i~~~g~~~----~~~~~~~~~~i~~ 77 (396)
T TIGR01547 2 EEIIAKGGRRSGKTFAIALKLVEKLAINKKQQNILAARKVQNSIRDSVFKDIENLLSIEGINY----EFKKSKSSMEIKI 77 (396)
T ss_pred ceEEEeCCCCcccHHHHHHHHHHHHHhcCCCcEEEEEehhhhHHHHHHHHHHHHHHHHcCChh----heeecCCccEEEe
Confidence 467899999999996655444433333 456667777877767777766655432 3210 0111000 0001
Q ss_pred CC-CceEEEech-HHHHHHHhcCCCCCCCcEEEEeCCCcCCcChhHHHHHHHHHHHhcCCceEEEeecccc
Q 006122 139 KD-LTAIKFLTD-GVLLREMMDDPLLTKYSVIMVDEAHERSISTDILLGLLKKIQRCRSDLRLIISSATIE 207 (660)
Q Consensus 139 ~~-~~~I~v~T~-~~ll~~l~~~~~l~~~~~iIiDE~Her~~~~d~ll~~l~~~~~~~~~~kii~~SAT~~ 207 (660)
.. ...|+|..- +...+ +. -...+..+.+|||.+.. .+....++.++.. ......|++|.|++
T Consensus 78 ~~~g~~i~f~g~~d~~~~-ik---~~~~~~~~~idEa~~~~--~~~~~~l~~rlr~-~~~~~~i~~t~NP~ 141 (396)
T TIGR01547 78 LNTGKKFIFKGLNDKPNK-LK---SGAGIAIIWFEEASQLT--FEDIKELIPRLRE-TGGKKFIIFSSNPE 141 (396)
T ss_pred cCCCeEEEeecccCChhH-hh---CcceeeeehhhhhhhcC--HHHHHHHHHHhhc-cCCccEEEEEcCcC
Confidence 11 244555433 11111 11 13346899999999643 3455555555422 12222478888883
No 457
>COG1122 CbiO ABC-type cobalt transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=92.82 E-value=0.69 Score=45.61 Aligned_cols=54 Identities=11% Similarity=0.137 Sum_probs=34.8
Q ss_pred CCCcEEEEeCCCcCCcChhHHHHHHHHHHHhcCCceEEEeecccchHHHHHHhhc
Q 006122 163 TKYSVIMVDEAHERSISTDILLGLLKKIQRCRSDLRLIISSATIEAKSMSAFFHA 217 (660)
Q Consensus 163 ~~~~~iIiDE~Her~~~~d~ll~~l~~~~~~~~~~kii~~SAT~~~~~~~~~~~~ 217 (660)
.+-.++|+||.= -+++..-...+++.+.....+-..-++.+|-+.+.+..|-..
T Consensus 155 ~~P~iliLDEPt-a~LD~~~~~~l~~~l~~L~~~~~~tii~~tHd~~~~~~~ad~ 208 (235)
T COG1122 155 MGPEILLLDEPT-AGLDPKGRRELLELLKKLKEEGGKTIIIVTHDLELVLEYADR 208 (235)
T ss_pred cCCCEEEEcCCC-CCCCHHHHHHHHHHHHHHHhcCCCeEEEEeCcHHHHHhhCCE
Confidence 356899999987 456666656666666555544334455667777777666543
No 458
>PF13207 AAA_17: AAA domain; PDB: 3AKC_A 3AKE_A 3AKD_A 2QL6_G 2QT1_A 2QSZ_A 2QSY_A 2QT0_A 2QG6_A 2P0E_A ....
Probab=92.80 E-value=0.11 Score=45.40 Aligned_cols=23 Identities=35% Similarity=0.481 Sum_probs=18.8
Q ss_pred EEEEEcCCCCcHHHHHHHHHHhc
Q 006122 67 TTIIVGETGSGKTTQIPQYLKEA 89 (660)
Q Consensus 67 ~vii~apTGsGKT~~ip~~l~~~ 89 (660)
+++|.|++||||||+.-.+....
T Consensus 1 vI~I~G~~gsGKST~a~~La~~~ 23 (121)
T PF13207_consen 1 VIIISGPPGSGKSTLAKELAERL 23 (121)
T ss_dssp EEEEEESTTSSHHHHHHHHHHHH
T ss_pred CEEEECCCCCCHHHHHHHHHHHH
Confidence 47899999999998887665543
No 459
>cd03252 ABCC_Hemolysin The ABC-transporter hemolysin B is a central component of the secretion machinery that translocates the toxin, hemolysin A, in a Sec-independent fashion across both membranes of E. coli. The hemolysin A (HlyA) transport machinery is composed of the ATP-binding cassette (ABC) transporter HlyB located in the inner membrane, hemolysin D (HlyD), also anchored in the inner membrane, and TolC, which resides in the outer membrane. HlyD apparently forms a continuous channel that bridges the entire periplasm, interacting with TolC and HlyB. This arrangement prevents the appearance of periplasmic intermediates of HlyA during substrate transport. Little is known about the molecular details of HlyA transport, but it is evident that ATP-hydrolysis by the ABC-transporter HlyB is a necessary source of energy.
Probab=92.79 E-value=0.23 Score=49.26 Aligned_cols=27 Identities=30% Similarity=0.361 Sum_probs=22.6
Q ss_pred HhcCCEEEEEcCCCCcHHHHHHHHHHh
Q 006122 62 VETHATTIIVGETGSGKTTQIPQYLKE 88 (660)
Q Consensus 62 l~~~~~vii~apTGsGKT~~ip~~l~~ 88 (660)
+..++.+.|.||.||||||++-.+.-.
T Consensus 25 i~~Ge~~~i~G~nGsGKSTLl~~l~Gl 51 (237)
T cd03252 25 IKPGEVVGIVGRSGSGKSTLTKLIQRF 51 (237)
T ss_pred EcCCCEEEEECCCCCCHHHHHHHHhcC
Confidence 357899999999999999988766543
No 460
>TIGR01277 thiQ thiamine ABC transporter, ATP-binding protein. This model describes the energy-transducing ATPase subunit ThiQ of the ThiBPQ thiamine (and thiamine pyrophosphate) ABC transporter in several Proteobacteria. This protein is found so far only in Proteobacteria, and is found in complete genomes only if the ThiB and ThiP subunits are also found.
Probab=92.76 E-value=0.18 Score=49.03 Aligned_cols=27 Identities=26% Similarity=0.336 Sum_probs=22.7
Q ss_pred HhcCCEEEEEcCCCCcHHHHHHHHHHh
Q 006122 62 VETHATTIIVGETGSGKTTQIPQYLKE 88 (660)
Q Consensus 62 l~~~~~vii~apTGsGKT~~ip~~l~~ 88 (660)
+..++.+.|.||+||||||++-.+.-.
T Consensus 21 i~~Ge~~~i~G~nGsGKSTLl~~l~G~ 47 (213)
T TIGR01277 21 VADGEIVAIMGPSGAGKSTLLNLIAGF 47 (213)
T ss_pred EeCCcEEEEECCCCCCHHHHHHHHhcC
Confidence 457899999999999999988766543
No 461
>TIGR03411 urea_trans_UrtD urea ABC transporter, ATP-binding protein UrtD. Members of this protein family are ABC transporter ATP-binding subunits associated with urea transport and metabolism. This protein is found in a conserved five-gene transport operon typically found adjacent to urease genes. It was shown in Cyanobacteria that disruption leads to the loss of high-affinity urea transport activity.
Probab=92.70 E-value=0.18 Score=50.13 Aligned_cols=27 Identities=30% Similarity=0.495 Sum_probs=22.3
Q ss_pred HhcCCEEEEEcCCCCcHHHHHHHHHHh
Q 006122 62 VETHATTIIVGETGSGKTTQIPQYLKE 88 (660)
Q Consensus 62 l~~~~~vii~apTGsGKT~~ip~~l~~ 88 (660)
+..++.+.|.||.|+||||++-.+.-.
T Consensus 25 i~~Ge~~~l~G~nGsGKSTLl~~l~G~ 51 (242)
T TIGR03411 25 VDPGELRVIIGPNGAGKTTMMDVITGK 51 (242)
T ss_pred EcCCcEEEEECCCCCCHHHHHHHHhCC
Confidence 457899999999999999988766543
No 462
>cd03231 ABC_CcmA_heme_exporter CcmA, the ATP-binding component of the bacterial CcmAB transporter. The CCM family is involved in bacterial cytochrome c biogenesis. Cytochrome c maturation in E. coli requires the ccm operon, which encodes eight membrane proteins (CcmABCDEFGH). CcmE is a periplasmic heme chaperone that binds heme covalently and transfers it onto apocytochrome c in the presence of CcmF, CcmG, and CcmH. The CcmAB proteins represent an ABC transporter and the CcmCD proteins participate in heme transfer to CcmE.
Probab=92.66 E-value=0.17 Score=48.80 Aligned_cols=27 Identities=26% Similarity=0.310 Sum_probs=22.4
Q ss_pred HhcCCEEEEEcCCCCcHHHHHHHHHHh
Q 006122 62 VETHATTIIVGETGSGKTTQIPQYLKE 88 (660)
Q Consensus 62 l~~~~~vii~apTGsGKT~~ip~~l~~ 88 (660)
+..++.+.|.|+.|+||||++-.+.-.
T Consensus 23 i~~Ge~~~i~G~nGsGKSTLl~~l~G~ 49 (201)
T cd03231 23 LAAGEALQVTGPNGSGKTTLLRILAGL 49 (201)
T ss_pred EcCCCEEEEECCCCCCHHHHHHHHhCC
Confidence 467899999999999999988765543
No 463
>cd03245 ABCC_bacteriocin_exporters ABC-type bacteriocin exporters. Many non-lantibiotic bacteriocins of lactic acid bacteria are produced as precursors which have N-terminal leader peptides that share similarities in amino acid sequence and contain a conserved processing site of two glycine residues in positions -1 and -2. A dedicated ATP-binding cassette (ABC) transporter is responsible for the proteolytic cleavage of the leader peptides and subsequent translocation of the bacteriocins across the cytoplasmic membrane.
Probab=92.65 E-value=0.12 Score=50.47 Aligned_cols=27 Identities=26% Similarity=0.404 Sum_probs=22.6
Q ss_pred HhcCCEEEEEcCCCCcHHHHHHHHHHh
Q 006122 62 VETHATTIIVGETGSGKTTQIPQYLKE 88 (660)
Q Consensus 62 l~~~~~vii~apTGsGKT~~ip~~l~~ 88 (660)
+..++.+.|.||.||||||++-.+.-.
T Consensus 27 i~~G~~~~i~G~nGsGKSTLl~~i~G~ 53 (220)
T cd03245 27 IRAGEKVAIIGRVGSGKSTLLKLLAGL 53 (220)
T ss_pred EcCCCEEEEECCCCCCHHHHHHHHhcC
Confidence 367899999999999999988766543
No 464
>PRK14873 primosome assembly protein PriA; Provisional
Probab=92.63 E-value=0.24 Score=56.51 Aligned_cols=76 Identities=24% Similarity=0.242 Sum_probs=61.8
Q ss_pred CCCcEEEEcCCHHHHHHHHHHHHHHhhhccCCCCCeEEEEccCCCCHHHHhhhcCCCCCCCcEEEEeCCCcccccCCCCe
Q 006122 275 PPGDILVFLTGQDDIDATIQLLTEEARTSKKNSSGLIILPLYSGLSRAEQEQVFSPTPRGKRKVVISTNIAETSLTLEGI 354 (660)
Q Consensus 275 ~~~~iLVF~~~~~~i~~l~~~L~~~~~~~~~~~~~~~v~~lh~~l~~~~r~~v~~~f~~g~~~vlvaT~i~e~Gidip~v 354 (660)
.++++||.+|....+..+.+.|++.+. ...+..+||++++.+|.+.+....+|+.+|+|.|-.+-- ..+++.
T Consensus 187 ~Gk~vLvLvPEi~lt~q~~~rl~~~f~-------~~~v~~lhS~l~~~~R~~~w~~~~~G~~~IViGtRSAvF-aP~~~L 258 (665)
T PRK14873 187 AGRGALVVVPDQRDVDRLEAALRALLG-------AGDVAVLSAGLGPADRYRRWLAVLRGQARVVVGTRSAVF-APVEDL 258 (665)
T ss_pred cCCeEEEEecchhhHHHHHHHHHHHcC-------CCcEEEECCCCCHHHHHHHHHHHhCCCCcEEEEcceeEE-eccCCC
Confidence 466799999999999999999988751 256889999999999999999999999999999965422 244555
Q ss_pred EEEE
Q 006122 355 VYVV 358 (660)
Q Consensus 355 ~~VI 358 (660)
..||
T Consensus 259 gLII 262 (665)
T PRK14873 259 GLVA 262 (665)
T ss_pred CEEE
Confidence 5544
No 465
>cd03263 ABC_subfamily_A The ABCA subfamily mediates the transport of a variety of lipid compounds. Mutations of members of ABCA subfamily are associated with human genetic diseases, such as, familial high-density lipoprotein (HDL) deficiency, neonatal surfactant deficiency, degenerative retinopathies, and congenital keratinization disorders. The ABCA1 protein is involved in disorders of cholesterol transport and high-density lipoprotein (HDL) biosynthesis. The ABCA4 (ABCR) protein transports vitamin A derivatives in the outer segments of photoreceptor cells, and therefore, performs a crucial step in the visual cycle. The ABCA genes are not present in yeast. However, evolutionary studies of ABCA genes indicate that they arose as transporters that subsequently duplicated and that certain sets of ABCA genes were lost in different eukaryotic lineages.
Probab=92.62 E-value=0.94 Score=44.20 Aligned_cols=52 Identities=23% Similarity=0.266 Sum_probs=32.0
Q ss_pred CCCCCcEEEEeCCCcCCcChhHHHHHHHHHHHhcCCceEEEeecccchHHHHHHh
Q 006122 161 LLTKYSVIMVDEAHERSISTDILLGLLKKIQRCRSDLRLIISSATIEAKSMSAFF 215 (660)
Q Consensus 161 ~l~~~~~iIiDE~Her~~~~d~ll~~l~~~~~~~~~~kii~~SAT~~~~~~~~~~ 215 (660)
++.+.+++|+||.= .+++......+.+.+.....+ +.|++ +|-+.+.+.++.
T Consensus 148 l~~~p~llllDEP~-~~LD~~~~~~l~~~l~~~~~~-~tii~-~sH~~~~~~~~~ 199 (220)
T cd03263 148 LIGGPSVLLLDEPT-SGLDPASRRAIWDLILEVRKG-RSIIL-TTHSMDEAEALC 199 (220)
T ss_pred HhcCCCEEEECCCC-CCCCHHHHHHHHHHHHHHhcC-CEEEE-EcCCHHHHHHhc
Confidence 46677999999988 567776666666665554444 33333 344555454444
No 466
>PF12846 AAA_10: AAA-like domain
Probab=92.56 E-value=0.14 Score=52.67 Aligned_cols=38 Identities=39% Similarity=0.670 Sum_probs=25.7
Q ss_pred CCEEEEEcCCCCcHHHHHHHHHHhccccCCCeEEEEeCch
Q 006122 65 HATTIIVGETGSGKTTQIPQYLKEAGWADGGRVIACTQPR 104 (660)
Q Consensus 65 ~~~vii~apTGsGKT~~ip~~l~~~~~~~~~~~i~v~p~r 104 (660)
|.+++|.|+||||||+.+-.++... ...+..++++ -+.
T Consensus 1 n~h~~i~G~tGsGKT~~~~~l~~~~-~~~g~~~~i~-D~~ 38 (304)
T PF12846_consen 1 NPHTLILGKTGSGKTTLLKNLLEQL-IRRGPRVVIF-DPK 38 (304)
T ss_pred CCeEEEECCCCCcHHHHHHHHHHHH-HHcCCCEEEE-cCC
Confidence 5689999999999998877665544 3344444444 443
No 467
>PRK10247 putative ABC transporter ATP-binding protein YbbL; Provisional
Probab=92.56 E-value=0.31 Score=47.91 Aligned_cols=26 Identities=23% Similarity=0.395 Sum_probs=22.0
Q ss_pred HhcCCEEEEEcCCCCcHHHHHHHHHH
Q 006122 62 VETHATTIIVGETGSGKTTQIPQYLK 87 (660)
Q Consensus 62 l~~~~~vii~apTGsGKT~~ip~~l~ 87 (660)
+..++.+.|.||.||||||++-.+.-
T Consensus 30 i~~Ge~~~i~G~nGsGKSTLl~~l~G 55 (225)
T PRK10247 30 LRAGEFKLITGPSGCGKSTLLKIVAS 55 (225)
T ss_pred EcCCCEEEEECCCCCCHHHHHHHHhc
Confidence 35789999999999999998876654
No 468
>cd03293 ABC_NrtD_SsuB_transporters NrtD and SsuB are the ATP-binding subunits of the bacterial ABC-type nitrate and sulfonate transport systems, respectively. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=92.55 E-value=0.13 Score=50.24 Aligned_cols=26 Identities=31% Similarity=0.414 Sum_probs=21.9
Q ss_pred HhcCCEEEEEcCCCCcHHHHHHHHHH
Q 006122 62 VETHATTIIVGETGSGKTTQIPQYLK 87 (660)
Q Consensus 62 l~~~~~vii~apTGsGKT~~ip~~l~ 87 (660)
+..++.+.|.||.||||||++-.+.-
T Consensus 27 i~~G~~~~i~G~nGsGKSTLl~~l~G 52 (220)
T cd03293 27 VEEGEFVALVGPSGCGKSTLLRIIAG 52 (220)
T ss_pred EeCCcEEEEECCCCCCHHHHHHHHhC
Confidence 35789999999999999998876653
No 469
>TIGR03522 GldA_ABC_ATP gliding motility-associated ABC transporter ATP-binding subunit GldA. Members of this protein family are exclusive to the Bacteroidetes phylum (previously Cytophaga-Flavobacteria-Bacteroides). GldA is an ABC transporter ATP-binding protein (pfam00005) linked to a type of rapid surface gliding motility found in certain Bacteroidetes, such as Flavobacterium johnsoniae and Cytophaga hutchinsonii. Knockouts of GldA abolish the gliding phenotype. Gliding motility appears closely linked to chitin utilization in the model species Flavobacterium johnsoniae. Bacteroidetes with members of this protein family appear to have all of the genes associated with gliding motility.
Probab=92.53 E-value=0.17 Score=52.21 Aligned_cols=66 Identities=20% Similarity=0.315 Sum_probs=37.1
Q ss_pred echHHHHHHHhcCCCCCCCcEEEEeCCCcCCcChhHHHHHHHHHHHhcCCceEEEeecccchHHHHHHh
Q 006122 147 LTDGVLLREMMDDPLLTKYSVIMVDEAHERSISTDILLGLLKKIQRCRSDLRLIISSATIEAKSMSAFF 215 (660)
Q Consensus 147 ~T~~~ll~~l~~~~~l~~~~~iIiDE~Her~~~~d~ll~~l~~~~~~~~~~kii~~SAT~~~~~~~~~~ 215 (660)
.+.|.-.+......++.+..++|+||-- .+++......+.+.+.....+..+|+.| -+.+.+.++.
T Consensus 134 LS~G~~qrv~la~al~~~p~lliLDEPt-~gLD~~~~~~l~~~l~~~~~~~tiii~s--H~l~~~~~~~ 199 (301)
T TIGR03522 134 LSKGYRQRVGLAQALIHDPKVLILDEPT-TGLDPNQLVEIRNVIKNIGKDKTIILST--HIMQEVEAIC 199 (301)
T ss_pred CCHHHHHHHHHHHHHhcCCCEEEEcCCc-ccCCHHHHHHHHHHHHHhcCCCEEEEEc--CCHHHHHHhC
Confidence 3444444443333356778999999998 5777766655555555544443344433 3344444443
No 470
>COG0396 sufC Cysteine desulfurase activator ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=92.52 E-value=0.13 Score=49.43 Aligned_cols=51 Identities=16% Similarity=0.276 Sum_probs=32.7
Q ss_pred CCCCcEEEEeCCCcCCcChhHHHHHHHHHHHhcCC-ceEEEeecccchHHHHHHhh
Q 006122 162 LTKYSVIMVDEAHERSISTDILLGLLKKIQRCRSD-LRLIISSATIEAKSMSAFFH 216 (660)
Q Consensus 162 l~~~~~iIiDE~Her~~~~d~ll~~l~~~~~~~~~-~kii~~SAT~~~~~~~~~~~ 216 (660)
+-+.++.|+||-+ -+++.|.+..+-+-+...+.. .-+++.+ ..+.+.+|..
T Consensus 160 ~lePkl~ILDE~D-SGLDIdalk~V~~~i~~lr~~~~~~liIT---Hy~rll~~i~ 211 (251)
T COG0396 160 LLEPKLAILDEPD-SGLDIDALKIVAEGINALREEGRGVLIIT---HYQRLLDYIK 211 (251)
T ss_pred hcCCCEEEecCCC-cCccHHHHHHHHHHHHHHhcCCCeEEEEe---cHHHHHhhcC
Confidence 3456899999999 589999888777776665433 2233332 3344555553
No 471
>cd03260 ABC_PstB_phosphate_transporter Phosphate uptake is of fundamental importance in the cell physiology of bacteria because phosphate is required as a nutrient. The Pst system of E. coli comprises four distinct subunits encoded by the pstS, pstA, pstB, and pstC genes. The PstS protein is a phosphate-binding protein located in the periplasmic space. P stA and PstC are hydrophobic and they form the transmembrane portion of the Pst system. PstB is the catalytic subunit, which couples the energy of ATP hydrolysis to the import of phosphate across cellular membranes through the Pst system, often referred as ABC-protein. PstB belongs to one of the largest superfamilies of proteins characterized by a highly conserved adenosine triphosphate (ATP) binding cassette (ABC), which is also a nucleotide binding domain (NBD).
Probab=92.47 E-value=0.27 Score=48.36 Aligned_cols=53 Identities=13% Similarity=0.163 Sum_probs=32.7
Q ss_pred CCCCCcEEEEeCCCcCCcChhHHHHHHHHHHHhcCCceEEEeecccchHHHHHHhh
Q 006122 161 LLTKYSVIMVDEAHERSISTDILLGLLKKIQRCRSDLRLIISSATIEAKSMSAFFH 216 (660)
Q Consensus 161 ~l~~~~~iIiDE~Her~~~~d~ll~~l~~~~~~~~~~kii~~SAT~~~~~~~~~~~ 216 (660)
++.+.+++|+||-- .+++......+.+.+.....+ +.|++ .|-+.+.+.++.+
T Consensus 156 l~~~p~llllDEPt-~~LD~~~~~~l~~~l~~~~~~-~tii~-~sH~~~~~~~~~d 208 (227)
T cd03260 156 LANEPEVLLLDEPT-SALDPISTAKIEELIAELKKE-YTIVI-VTHNMQQAARVAD 208 (227)
T ss_pred HhcCCCEEEEeCCC-ccCCHHHHHHHHHHHHHHhhC-cEEEE-EeccHHHHHHhCC
Confidence 45667999999988 577777666666666555444 33333 3445554444443
No 472
>TIGR02640 gas_vesic_GvpN gas vesicle protein GvpN. Members of this family are the GvpN protein associated with the production of gas vesicles produced in some prokaryotes to give cells buoyancy. This family belongs to a larger family of ATPases (pfam07728).
Probab=92.46 E-value=0.2 Score=50.57 Aligned_cols=37 Identities=22% Similarity=0.281 Sum_probs=30.0
Q ss_pred cHHHHHHHHHHHhcCCEEEEEcCCCCcHHHHHHHHHH
Q 006122 51 VYKYRTAILYLVETHATTIIVGETGSGKTTQIPQYLK 87 (660)
Q Consensus 51 i~~~~~~i~~~l~~~~~vii~apTGsGKT~~ip~~l~ 87 (660)
+....+.++..+..+..+++.||+|+|||+++-.+..
T Consensus 7 ~~~l~~~~l~~l~~g~~vLL~G~~GtGKT~lA~~la~ 43 (262)
T TIGR02640 7 VKRVTSRALRYLKSGYPVHLRGPAGTGKTTLAMHVAR 43 (262)
T ss_pred HHHHHHHHHHHHhcCCeEEEEcCCCCCHHHHHHHHHH
Confidence 3445677888889999999999999999988766554
No 473
>COG1131 CcmA ABC-type multidrug transport system, ATPase component [Defense mechanisms]
Probab=92.40 E-value=0.3 Score=50.07 Aligned_cols=143 Identities=20% Similarity=0.211 Sum_probs=72.5
Q ss_pred HhcCCEEEEEcCCCCcHHHHHHHHHHhccccCCCeE-----------------EEEeCc-----hHHHHHHHHHHHHHHh
Q 006122 62 VETHATTIIVGETGSGKTTQIPQYLKEAGWADGGRV-----------------IACTQP-----RRLAVQAVASRVAEEM 119 (660)
Q Consensus 62 l~~~~~vii~apTGsGKT~~ip~~l~~~~~~~~~~~-----------------i~v~p~-----r~la~~~~~~~~~~~~ 119 (660)
+..+..+.+.||.|+||||++-.+.-.... .++.+ |.++|. -.+.+.+..+.++...
T Consensus 28 i~~Gei~gllG~NGAGKTTllk~l~gl~~p-~~G~i~i~G~~~~~~~~~~~~~igy~~~~~~~~~~lT~~e~l~~~~~l~ 106 (293)
T COG1131 28 VEPGEIFGLLGPNGAGKTTLLKILAGLLKP-TSGEILVLGYDVVKEPAKVRRRIGYVPQEPSLYPELTVRENLEFFARLY 106 (293)
T ss_pred EcCCeEEEEECCCCCCHHHHHHHHhCCcCC-CceEEEEcCEeCccCHHHHHhheEEEccCCCCCccccHHHHHHHHHHHh
Confidence 357889999999999999998766543321 11211 111111 1222333344444443
Q ss_pred CCee----------eeEEeeeeeccccCCCCCceEEEechHHHHHHHhcCCCCCCCcEEEEeCCCcCCcChhHHHHHHHH
Q 006122 120 GVKV----------GEEVGYTIRFEDFTNKDLTAIKFLTDGVLLREMMDDPLLTKYSVIMVDEAHERSISTDILLGLLKK 189 (660)
Q Consensus 120 ~~~~----------~~~vg~~~~~~~~~~~~~~~I~v~T~~~ll~~l~~~~~l~~~~~iIiDE~Her~~~~d~ll~~l~~ 189 (660)
+... -..+|. .. .. +..+--.+-|+--+......++.+.+++|+||-= .++|......+.+.
T Consensus 107 ~~~~~~~~~~~~~~l~~~~L----~~--~~-~~~~~~lS~G~kqrl~ia~aL~~~P~lliLDEPt-~GLDp~~~~~~~~~ 178 (293)
T COG1131 107 GLSKEEAEERIEELLELFGL----ED--KA-NKKVRTLSGGMKQRLSIALALLHDPELLILDEPT-SGLDPESRREIWEL 178 (293)
T ss_pred CCChhHHHHHHHHHHHHcCC----ch--hh-CcchhhcCHHHHHHHHHHHHHhcCCCEEEECCCC-cCCCHHHHHHHHHH
Confidence 3210 011110 00 00 1112222334433333333346677999999987 67887766666666
Q ss_pred HHHhcCCc-eEEEeecccchHHHHHH
Q 006122 190 IQRCRSDL-RLIISSATIEAKSMSAF 214 (660)
Q Consensus 190 ~~~~~~~~-kii~~SAT~~~~~~~~~ 214 (660)
+......- ..|++| |-..+.....
T Consensus 179 l~~l~~~g~~tvlis-sH~l~e~~~~ 203 (293)
T COG1131 179 LRELAKEGGVTILLS-THILEEAEEL 203 (293)
T ss_pred HHHHHhCCCcEEEEe-CCcHHHHHHh
Confidence 66655443 455555 3344444444
No 474
>TIGR02204 MsbA_rel ABC transporter, permease/ATP-binding protein. This protein is related to a Proteobacterial ATP transporter that exports lipid A and to eukaryotic P-glycoproteins.
Probab=92.40 E-value=0.21 Score=56.77 Aligned_cols=28 Identities=32% Similarity=0.450 Sum_probs=23.6
Q ss_pred HhcCCEEEEEcCCCCcHHHHHHHHHHhc
Q 006122 62 VETHATTIIVGETGSGKTTQIPQYLKEA 89 (660)
Q Consensus 62 l~~~~~vii~apTGsGKT~~ip~~l~~~ 89 (660)
++.|+.+.|.|++||||||++-.++...
T Consensus 363 i~~Ge~i~IvG~sGsGKSTLlklL~gl~ 390 (576)
T TIGR02204 363 VRPGETVALVGPSGAGKSTLFQLLLRFY 390 (576)
T ss_pred ecCCCEEEEECCCCCCHHHHHHHHHhcc
Confidence 4689999999999999999987766544
No 475
>COG5008 PilU Tfp pilus assembly protein, ATPase PilU [Cell motility and secretion / Intracellular trafficking and secretion]
Probab=92.40 E-value=0.17 Score=49.42 Aligned_cols=42 Identities=31% Similarity=0.507 Sum_probs=28.3
Q ss_pred HhcCCEEEEEcCCCCcHHHHHHHHHHhccccCCCeEEEEeCc
Q 006122 62 VETHATTIIVGETGSGKTTQIPQYLKEAGWADGGRVIACTQP 103 (660)
Q Consensus 62 l~~~~~vii~apTGsGKT~~ip~~l~~~~~~~~~~~i~v~p~ 103 (660)
+.+...+|++|+|||||||-+..++-.......+.+|-+--|
T Consensus 124 ~~kRGLviiVGaTGSGKSTtmAaMi~yRN~~s~gHIiTIEDP 165 (375)
T COG5008 124 LAKRGLVIIVGATGSGKSTTMAAMIGYRNKNSTGHIITIEDP 165 (375)
T ss_pred cccCceEEEECCCCCCchhhHHHHhcccccCCCCceEEecCh
Confidence 456778999999999999777666654433333444544444
No 476
>TIGR00767 rho transcription termination factor Rho. Members of this family differ in the specificity of RNA binding.
Probab=92.40 E-value=0.13 Score=54.25 Aligned_cols=27 Identities=19% Similarity=0.300 Sum_probs=22.0
Q ss_pred HhcCCEEEEEcCCCCcHHHHHHHHHHh
Q 006122 62 VETHATTIIVGETGSGKTTQIPQYLKE 88 (660)
Q Consensus 62 l~~~~~vii~apTGsGKT~~ip~~l~~ 88 (660)
+..++.+.|+||+|+|||+++-.+...
T Consensus 165 ig~Gq~~~IvG~~g~GKTtL~~~i~~~ 191 (415)
T TIGR00767 165 IGKGQRGLIVAPPKAGKTVLLQKIAQA 191 (415)
T ss_pred eCCCCEEEEECCCCCChhHHHHHHHHh
Confidence 467899999999999999877665443
No 477
>TIGR03864 PQQ_ABC_ATP ABC transporter, ATP-binding subunit, PQQ-dependent alcohol dehydrogenase system. Members of this protein family are the ATP-binding subunit of an ABC transporter system that is associated with PQQ biosynthesis and PQQ-dependent alcohol dehydrogenases. While this family shows homology to several efflux ABC transporter subunits, the presence of a periplasmic substrate-binding protein and association with systems for catabolism of alcohols suggests a role in import rather than detoxification.
Probab=92.38 E-value=0.15 Score=50.46 Aligned_cols=26 Identities=23% Similarity=0.409 Sum_probs=22.0
Q ss_pred HhcCCEEEEEcCCCCcHHHHHHHHHH
Q 006122 62 VETHATTIIVGETGSGKTTQIPQYLK 87 (660)
Q Consensus 62 l~~~~~vii~apTGsGKT~~ip~~l~ 87 (660)
+..++.+.|.||+||||||++-.+.-
T Consensus 24 i~~Ge~~~i~G~nGsGKSTLl~~l~G 49 (236)
T TIGR03864 24 VRPGEFVALLGPNGAGKSTLFSLLTR 49 (236)
T ss_pred EcCCCEEEEECCCCCCHHHHHHHHhC
Confidence 45789999999999999998876653
No 478
>PF13671 AAA_33: AAA domain; PDB: 1LTQ_A 2IA5_K 1RC8_A 1LY1_A 1RRC_A 1RPZ_A 3ZVM_A 1YJ5_A 3ZVL_A 3U7E_B ....
Probab=92.37 E-value=0.13 Score=46.26 Aligned_cols=23 Identities=35% Similarity=0.485 Sum_probs=19.6
Q ss_pred EEEEEcCCCCcHHHHHHHHHHhc
Q 006122 67 TTIIVGETGSGKTTQIPQYLKEA 89 (660)
Q Consensus 67 ~vii~apTGsGKT~~ip~~l~~~ 89 (660)
+++++|++||||||++-.+....
T Consensus 1 lii~~G~pgsGKSt~a~~l~~~~ 23 (143)
T PF13671_consen 1 LIILCGPPGSGKSTLAKRLAKRL 23 (143)
T ss_dssp EEEEEESTTSSHHHHHHHHHHHS
T ss_pred CEEEECCCCCCHHHHHHHHHHHC
Confidence 57999999999999988776554
No 479
>TIGR03878 thermo_KaiC_2 KaiC domain protein, AF_0795 family. This KaiC domain-containing protein family occurs sporadically across a broad taxonomic range (Euryarchaeota, Aquificae, Dictyoglomi, Epsilonproteobacteria, and Firmicutes), but exclusively in thermophiles.
Probab=92.37 E-value=0.15 Score=51.39 Aligned_cols=40 Identities=20% Similarity=0.260 Sum_probs=30.8
Q ss_pred hcCCEEEEEcCCCCcHHHHHHHHHHhccccCCCeEEEEeCc
Q 006122 63 ETHATTIIVGETGSGKTTQIPQYLKEAGWADGGRVIACTQP 103 (660)
Q Consensus 63 ~~~~~vii~apTGsGKT~~ip~~l~~~~~~~~~~~i~v~p~ 103 (660)
..+..++|.|++|+|||++.-+++..... .+.++++++-.
T Consensus 34 p~gs~~lI~G~pGtGKT~l~~qf~~~~a~-~Ge~vlyis~E 73 (259)
T TIGR03878 34 PAYSVINITGVSDTGKSLMVEQFAVTQAS-RGNPVLFVTVE 73 (259)
T ss_pred ECCcEEEEEcCCCCCHHHHHHHHHHHHHh-CCCcEEEEEec
Confidence 45789999999999999888888776543 35567777643
No 480
>cd01122 GP4d_helicase GP4d_helicase is a homohexameric 5'-3' helicases. Helicases couple NTP hydrolysis to the unwinding of nucleic acid duplexes into their component strands.
Probab=92.34 E-value=0.15 Score=51.61 Aligned_cols=43 Identities=26% Similarity=0.214 Sum_probs=32.9
Q ss_pred HHHhcCCEEEEEcCCCCcHHHHHHHHHHhccccCCCeEEEEeC
Q 006122 60 YLVETHATTIIVGETGSGKTTQIPQYLKEAGWADGGRVIACTQ 102 (660)
Q Consensus 60 ~~l~~~~~vii~apTGsGKT~~ip~~l~~~~~~~~~~~i~v~p 102 (660)
.-+..+..++|.|++|+|||+++-+++.......+.++++++-
T Consensus 25 gG~~~g~~~~i~g~~G~GKT~l~~~~~~~~~~~~g~~vl~iS~ 67 (271)
T cd01122 25 KGLRKGELIILTAGTGVGKTTFLREYALDLITQHGVRVGTISL 67 (271)
T ss_pred EEEcCCcEEEEEcCCCCCHHHHHHHHHHHHHHhcCceEEEEEc
Confidence 4466788999999999999998888877664433566777764
No 481
>PLN03232 ABC transporter C family member; Provisional
Probab=92.32 E-value=0.36 Score=60.91 Aligned_cols=28 Identities=25% Similarity=0.458 Sum_probs=23.2
Q ss_pred HhcCCEEEEEcCCCCcHHHHHHHHHHhc
Q 006122 62 VETHATTIIVGETGSGKTTQIPQYLKEA 89 (660)
Q Consensus 62 l~~~~~vii~apTGsGKT~~ip~~l~~~ 89 (660)
+..|+.+-|+|+|||||||++-.++.-.
T Consensus 1259 I~~GekvaIVG~SGSGKSTL~~lL~rl~ 1286 (1495)
T PLN03232 1259 VSPSEKVGVVGRTGAGKSSMLNALFRIV 1286 (1495)
T ss_pred EcCCCEEEEECCCCCCHHHHHHHHhCCC
Confidence 4678999999999999999887666543
No 482
>PRK03992 proteasome-activating nucleotidase; Provisional
Probab=92.31 E-value=0.74 Score=49.33 Aligned_cols=25 Identities=24% Similarity=0.355 Sum_probs=19.4
Q ss_pred CCEEEEEcCCCCcHHHHHHHHHHhc
Q 006122 65 HATTIIVGETGSGKTTQIPQYLKEA 89 (660)
Q Consensus 65 ~~~vii~apTGsGKT~~ip~~l~~~ 89 (660)
...+++.||+|+|||+++-.+....
T Consensus 165 p~gvLL~GppGtGKT~lAkaia~~~ 189 (389)
T PRK03992 165 PKGVLLYGPPGTGKTLLAKAVAHET 189 (389)
T ss_pred CCceEEECCCCCChHHHHHHHHHHh
Confidence 4569999999999997776655443
No 483
>PRK13648 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=92.30 E-value=0.92 Score=45.91 Aligned_cols=27 Identities=33% Similarity=0.368 Sum_probs=22.4
Q ss_pred HhcCCEEEEEcCCCCcHHHHHHHHHHh
Q 006122 62 VETHATTIIVGETGSGKTTQIPQYLKE 88 (660)
Q Consensus 62 l~~~~~vii~apTGsGKT~~ip~~l~~ 88 (660)
+..++.+.|.||.||||||++-.+.-.
T Consensus 32 i~~Ge~~~I~G~nGsGKSTLl~~i~Gl 58 (269)
T PRK13648 32 IPKGQWTSIVGHNGSGKSTIAKLMIGI 58 (269)
T ss_pred EcCCCEEEEECCCCCCHHHHHHHHhcC
Confidence 357899999999999999988766543
No 484
>PRK14250 phosphate ABC transporter ATP-binding protein; Provisional
Probab=92.29 E-value=0.32 Score=48.32 Aligned_cols=26 Identities=38% Similarity=0.465 Sum_probs=22.0
Q ss_pred HhcCCEEEEEcCCCCcHHHHHHHHHH
Q 006122 62 VETHATTIIVGETGSGKTTQIPQYLK 87 (660)
Q Consensus 62 l~~~~~vii~apTGsGKT~~ip~~l~ 87 (660)
+..++.+.|.||+||||||++-.+.-
T Consensus 26 i~~Ge~~~i~G~nGsGKSTLl~~l~G 51 (241)
T PRK14250 26 FEGGAIYTIVGPSGAGKSTLIKLINR 51 (241)
T ss_pred EcCCCEEEEECCCCCCHHHHHHHHhC
Confidence 35789999999999999998876654
No 485
>TIGR00958 3a01208 Conjugate Transporter-2 (CT2) Family protein.
Probab=92.26 E-value=0.18 Score=58.72 Aligned_cols=28 Identities=25% Similarity=0.324 Sum_probs=23.6
Q ss_pred HhcCCEEEEEcCCCCcHHHHHHHHHHhc
Q 006122 62 VETHATTIIVGETGSGKTTQIPQYLKEA 89 (660)
Q Consensus 62 l~~~~~vii~apTGsGKT~~ip~~l~~~ 89 (660)
+..|+.+.|+||+||||||++-.+....
T Consensus 504 i~~Ge~vaIvG~SGsGKSTLl~lL~gl~ 531 (711)
T TIGR00958 504 LHPGEVVALVGPSGSGKSTVAALLQNLY 531 (711)
T ss_pred EcCCCEEEEECCCCCCHHHHHHHHHhcc
Confidence 4689999999999999999988766544
No 486
>PRK11247 ssuB aliphatic sulfonates transport ATP-binding subunit; Provisional
Probab=92.25 E-value=0.17 Score=50.77 Aligned_cols=27 Identities=22% Similarity=0.343 Sum_probs=22.5
Q ss_pred HhcCCEEEEEcCCCCcHHHHHHHHHHh
Q 006122 62 VETHATTIIVGETGSGKTTQIPQYLKE 88 (660)
Q Consensus 62 l~~~~~vii~apTGsGKT~~ip~~l~~ 88 (660)
+..++.+.|.||.||||||++-.+.-.
T Consensus 35 i~~Ge~~~I~G~NGsGKSTLlk~l~Gl 61 (257)
T PRK11247 35 IPAGQFVAVVGRSGCGKSTLLRLLAGL 61 (257)
T ss_pred EcCCCEEEEECCCCCCHHHHHHHHhcC
Confidence 457899999999999999988766543
No 487
>cd03253 ABCC_ATM1_transporter ATM1 is an ABC transporter that is expressed in the mitochondria. Although the specific function of ATM1 is unknown, its disruption results in the accumulation of excess mitochondrial iron, loss of mitochondrial cytochromes, oxidative damage to mitochondrial DNA, and decreased levels of cytosolic heme proteins. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=92.24 E-value=0.5 Score=46.71 Aligned_cols=27 Identities=30% Similarity=0.464 Sum_probs=22.5
Q ss_pred HhcCCEEEEEcCCCCcHHHHHHHHHHh
Q 006122 62 VETHATTIIVGETGSGKTTQIPQYLKE 88 (660)
Q Consensus 62 l~~~~~vii~apTGsGKT~~ip~~l~~ 88 (660)
+..++.+.|.||.||||||++-.+.-.
T Consensus 24 i~~Ge~~~l~G~nGsGKSTLl~~i~Gl 50 (236)
T cd03253 24 IPAGKKVAIVGPSGSGKSTILRLLFRF 50 (236)
T ss_pred EcCCCEEEEECCCCCCHHHHHHHHhcc
Confidence 357899999999999999988766543
No 488
>COG0467 RAD55 RecA-superfamily ATPases implicated in signal transduction [Signal transduction mechanisms]
Probab=92.21 E-value=0.16 Score=51.15 Aligned_cols=40 Identities=28% Similarity=0.426 Sum_probs=32.3
Q ss_pred HhcCCEEEEEcCCCCcHHHHHHHHHHhccccCCCeEEEEeC
Q 006122 62 VETHATTIIVGETGSGKTTQIPQYLKEAGWADGGRVIACTQ 102 (660)
Q Consensus 62 l~~~~~vii~apTGsGKT~~ip~~l~~~~~~~~~~~i~v~p 102 (660)
+..+.+++|.|++|||||++.-+++.+.... +.++++++-
T Consensus 20 ~p~g~~~lI~G~pGsGKT~f~~qfl~~~~~~-ge~vlyvs~ 59 (260)
T COG0467 20 LPRGSVVLITGPPGTGKTIFALQFLYEGARE-GEPVLYVST 59 (260)
T ss_pred CcCCcEEEEEcCCCCcHHHHHHHHHHHHHhc-CCcEEEEEe
Confidence 4568999999999999999999998877543 566777764
No 489
>PRK15429 formate hydrogenlyase transcriptional activator FhlA; Provisional
Probab=92.17 E-value=0.62 Score=53.98 Aligned_cols=43 Identities=21% Similarity=0.374 Sum_probs=26.4
Q ss_pred HHHHHHhcCCEEEEEcCCCCcHHHHHHHHHHhccccCCCeEEEE
Q 006122 57 AILYLVETHATTIIVGETGSGKTTQIPQYLKEAGWADGGRVIAC 100 (660)
Q Consensus 57 ~i~~~l~~~~~vii~apTGsGKT~~ip~~l~~~~~~~~~~~i~v 100 (660)
++-.+...+..++|.|+||||||+++-.+ .......+.+.+.+
T Consensus 391 ~~~~~a~~~~pVLI~GE~GTGK~~lA~~i-h~~s~r~~~~~v~i 433 (686)
T PRK15429 391 QVEMVAQSDSTVLILGETGTGKELIARAI-HNLSGRNNRRMVKM 433 (686)
T ss_pred HHHHHhCCCCCEEEECCCCcCHHHHHHHH-HHhcCCCCCCeEEE
Confidence 33444455668999999999999665544 43333334444433
No 490
>PRK10790 putative multidrug transporter membrane\ATP-binding components; Provisional
Probab=92.17 E-value=0.24 Score=56.48 Aligned_cols=28 Identities=32% Similarity=0.406 Sum_probs=23.3
Q ss_pred HhcCCEEEEEcCCCCcHHHHHHHHHHhc
Q 006122 62 VETHATTIIVGETGSGKTTQIPQYLKEA 89 (660)
Q Consensus 62 l~~~~~vii~apTGsGKT~~ip~~l~~~ 89 (660)
+..|+.+.|+|++||||||++-.+....
T Consensus 364 i~~Ge~iaIvG~SGsGKSTLl~lL~gl~ 391 (592)
T PRK10790 364 VPSRGFVALVGHTGSGKSTLASLLMGYY 391 (592)
T ss_pred EcCCCEEEEECCCCCCHHHHHHHHhccc
Confidence 4678999999999999999887665543
No 491
>cd03298 ABC_ThiQ_thiamine_transporter ABC-type thiamine tranport system; part of the binding-protein-dependent transport system tbpA-thiPQ for thiamine and TPP. Probably responsible for the translocation of thiamine across the membrane. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=92.16 E-value=0.26 Score=47.86 Aligned_cols=26 Identities=35% Similarity=0.425 Sum_probs=22.1
Q ss_pred HhcCCEEEEEcCCCCcHHHHHHHHHH
Q 006122 62 VETHATTIIVGETGSGKTTQIPQYLK 87 (660)
Q Consensus 62 l~~~~~vii~apTGsGKT~~ip~~l~ 87 (660)
+..++.+.|.||.||||||++-.+.-
T Consensus 21 i~~Ge~~~l~G~nGsGKSTLl~~l~g 46 (211)
T cd03298 21 FAQGEITAIVGPSGSGKSTLLNLIAG 46 (211)
T ss_pred EcCCCEEEEECCCCCCHHHHHHHHhC
Confidence 46789999999999999998876654
No 492
>COG4988 CydD ABC-type transport system involved in cytochrome bd biosynthesis, ATPase and permease components [Energy production and conversion / Posttranslational modification, protein turnover, chaperones]
Probab=92.15 E-value=0.27 Score=53.71 Aligned_cols=28 Identities=29% Similarity=0.430 Sum_probs=23.2
Q ss_pred HhcCCEEEEEcCCCCcHHHHHHHHHHhc
Q 006122 62 VETHATTIIVGETGSGKTTQIPQYLKEA 89 (660)
Q Consensus 62 l~~~~~vii~apTGsGKT~~ip~~l~~~ 89 (660)
+..++.+.++|++||||||++-.++-..
T Consensus 344 ~~~g~~talvG~SGaGKSTLl~lL~G~~ 371 (559)
T COG4988 344 IKAGQLTALVGASGAGKSTLLNLLLGFL 371 (559)
T ss_pred ecCCcEEEEECCCCCCHHHHHHHHhCcC
Confidence 4678999999999999999987665433
No 493
>TIGR03740 galliderm_ABC gallidermin-class lantibiotic protection ABC transporter, ATP-binding subunit. Model TIGR03731 represents the family of all lantibiotics related to gallidermin, including epidermin, mutatin, and nisin. This protein family describes the ATP-binding subunit of a gallidermin/epidermin class lantibiotic protection transporter. It is largely restricted to gallidermin-family lantibiotic biosynthesis and export cassettes, but also occurs in orphan transporter cassettes in species that lack candidate lantibiotic precursor and synthetase genes.
Probab=92.15 E-value=0.25 Score=48.44 Aligned_cols=26 Identities=23% Similarity=0.362 Sum_probs=22.1
Q ss_pred HhcCCEEEEEcCCCCcHHHHHHHHHH
Q 006122 62 VETHATTIIVGETGSGKTTQIPQYLK 87 (660)
Q Consensus 62 l~~~~~vii~apTGsGKT~~ip~~l~ 87 (660)
+..++.+.|.||.||||||++-.+.-
T Consensus 23 i~~Ge~~~i~G~nGsGKSTLl~~l~G 48 (223)
T TIGR03740 23 VPKNSVYGLLGPNGAGKSTLLKMITG 48 (223)
T ss_pred EcCCcEEEEECCCCCCHHHHHHHHhC
Confidence 45789999999999999998876654
No 494
>KOG2543 consensus Origin recognition complex, subunit 5 [Replication, recombination and repair]
Probab=92.15 E-value=1.2 Score=46.07 Aligned_cols=43 Identities=23% Similarity=0.316 Sum_probs=32.7
Q ss_pred cCCCcHHHHHHHHHHHhcCC------EEEEEcCCCCcHHHHHHHHHHhc
Q 006122 47 QRLPVYKYRTAILYLVETHA------TTIIVGETGSGKTTQIPQYLKEA 89 (660)
Q Consensus 47 ~~lPi~~~~~~i~~~l~~~~------~vii~apTGsGKT~~ip~~l~~~ 89 (660)
...|-...|-..+..+..++ +++|.|.+|||||+++-+++...
T Consensus 6 ~~v~~Re~qi~~L~~Llg~~~~~~PS~~~iyG~sgTGKT~~~r~~l~~~ 54 (438)
T KOG2543|consen 6 PNVPCRESQIRRLKSLLGNNSCTIPSIVHIYGHSGTGKTYLVRQLLRKL 54 (438)
T ss_pred cCccchHHHHHHHHHHhCCCCcccceeEEEeccCCCchhHHHHHHHhhc
Confidence 34677777777777776553 34889999999999998888765
No 495
>TIGR01192 chvA glucan exporter ATP-binding protein. This model describes glucan exporter ATP binding protein in bacteria. It belongs to the larger ABC transporter superfamily with the characteristic ATP binding motif. The In general, this protein is in some ways implicated in osmoregulation and suggested to participate in the export of glucan from the cytoplasm to periplasm. The cyclic beta-1,2-glucan in the bactrerial periplasmic space is suggested to confer the property of high osmolority. It has also been demonstrated that mutants in this loci have lost functions of virulence and motility. It is unclear as to how virulence and osmoadaptaion are related.
Probab=92.09 E-value=0.55 Score=53.39 Aligned_cols=27 Identities=41% Similarity=0.490 Sum_probs=22.8
Q ss_pred HhcCCEEEEEcCCCCcHHHHHHHHHHh
Q 006122 62 VETHATTIIVGETGSGKTTQIPQYLKE 88 (660)
Q Consensus 62 l~~~~~vii~apTGsGKT~~ip~~l~~ 88 (660)
+..|+.+.|.||+||||||++-.+...
T Consensus 358 i~~G~~~~ivG~sGsGKSTL~~ll~g~ 384 (585)
T TIGR01192 358 AKAGQTVAIVGPTGAGKTTLINLLQRV 384 (585)
T ss_pred EcCCCEEEEECCCCCCHHHHHHHHccC
Confidence 468899999999999999998766544
No 496
>KOG1132 consensus Helicase of the DEAD superfamily [Replication, recombination and repair]
Probab=92.08 E-value=0.35 Score=54.90 Aligned_cols=122 Identities=20% Similarity=0.192 Sum_probs=0.0
Q ss_pred HHHHHHHHHHhcCCEEEEEcCCCCcHH-HHHHHHHHhccccC--------------------------------------
Q 006122 53 KYRTAILYLVETHATTIIVGETGSGKT-TQIPQYLKEAGWAD-------------------------------------- 93 (660)
Q Consensus 53 ~~~~~i~~~l~~~~~vii~apTGsGKT-~~ip~~l~~~~~~~-------------------------------------- 93 (660)
.+-..++..+...++.++..|||+||| .++-..+.-.....
T Consensus 28 a~M~rvl~~L~~~q~~llESPTGTGKSLsLLCS~LAW~q~~k~~~~~~~~s~~~~~~~p~~~s~~~g~~s~e~~e~~~~~ 107 (945)
T KOG1132|consen 28 AFMTRVLSCLDRKQNGLLESPTGTGKSLSLLCSTLAWQQHLKSRKPKGKISERKAGFIPTQPSDSGGEKSEEAGEPIACY 107 (945)
T ss_pred HHHHHHHHHHHHhhhhhccCCCCCCccHHHHHHHHHHHHHhhccccccchhhhhccccCCCCccCCCCchhhhcCccccc
Q ss_pred --CCeEEEEeCchHHHHHHHHHHHH-------------------------------------------------------
Q 006122 94 --GGRVIACTQPRRLAVQAVASRVA------------------------------------------------------- 116 (660)
Q Consensus 94 --~~~~i~v~p~r~la~~~~~~~~~------------------------------------------------------- 116 (660)
..++++.+-+....+|-+.+.-.
T Consensus 108 ~~ipkIyyaSRTHsQltQvvrElrrT~Y~vkmtVLgSReq~Cinpev~k~~~~~~~~~~C~k~~~~~~C~f~~~~~~~sl 187 (945)
T KOG1132|consen 108 TGIPKIYYASRTHSQLTQVVRELRRTGYRVKMTVLGSREQLCINPEVKKLEGNALQNHVCKKLVKSRSCHFYKIVEEKSL 187 (945)
T ss_pred cCCceEEEecchHHHHHHHHHHHhhcCCCCceEEeecchhhccCHHHhhhhcchhhhhHHHhhccccccccccccccccc
Q ss_pred ----------HHhCCeeeeEEeeeeeccccCCCCCceEEEechHHHHHHHhcCCC--CCCCcEEEEeCCC
Q 006122 117 ----------EEMGVKVGEEVGYTIRFEDFTNKDLTAIKFLTDGVLLREMMDDPL--LTKYSVIMVDEAH 174 (660)
Q Consensus 117 ----------~~~~~~~~~~vg~~~~~~~~~~~~~~~I~v~T~~~ll~~l~~~~~--l~~~~~iIiDE~H 174 (660)
-|--+++|...+...-+........++|+||-...|++-...... --+-++||+||||
T Consensus 188 ~~~l~~~i~DIEDLVk~Gk~~~~CPYfaSR~l~edAdIIF~PYnYLiDp~iR~~~~v~LknsIVIfDEAH 257 (945)
T KOG1132|consen 188 QPRLHDEIFDIEDLVKIGKKSRGCPYFASRELKEDADIIFCPYNYLIDPKIRRSHKVDLKNSIVIFDEAH 257 (945)
T ss_pred ccccCCCcccHHHHHHhCccCcCCcchhhhhhcccCcEEEechhhhcCHhhhccccccccccEEEEeccc
No 497
>TIGR03346 chaperone_ClpB ATP-dependent chaperone ClpB. Members of this protein family are the bacterial ATP-dependent chaperone ClpB. This protein belongs to the AAA family, ATPases associated with various cellular activities (pfam00004). This molecular chaperone does not act as a protease, but rather serves to disaggregate misfolded and aggregated proteins.
Probab=92.06 E-value=0.6 Score=55.41 Aligned_cols=40 Identities=25% Similarity=0.402 Sum_probs=27.1
Q ss_pred CCcHHHHHHHHHHHh-----cCCEEEEEcCCCCcHHHHHHHHHHh
Q 006122 49 LPVYKYRTAILYLVE-----THATTIIVGETGSGKTTQIPQYLKE 88 (660)
Q Consensus 49 lPi~~~~~~i~~~l~-----~~~~vii~apTGsGKT~~ip~~l~~ 88 (660)
=|+....+++-..+. ..++.++.||+|+|||+++-.+...
T Consensus 173 ~~~igr~~ei~~~~~~l~r~~~~n~lL~G~pGvGKT~l~~~la~~ 217 (852)
T TIGR03346 173 DPVIGRDEEIRRTIQVLSRRTKNNPVLIGEPGVGKTAIVEGLAQR 217 (852)
T ss_pred CcCCCcHHHHHHHHHHHhcCCCCceEEEcCCCCCHHHHHHHHHHH
Confidence 356555555444442 3467999999999999887765544
No 498
>TIGR00763 lon ATP-dependent protease La. This protein is induced by heat shock and other stresses in E. coli, B. subtilis, and other species. The yeast member, designated PIM1, is located in the mitochondrial matrix, required for mitochondrial function, and also induced by heat shock.
Probab=92.05 E-value=0.91 Score=53.30 Aligned_cols=39 Identities=26% Similarity=0.278 Sum_probs=26.7
Q ss_pred cHHHHHHHHHHHh--------cCCEEEEEcCCCCcHHHHHHHHHHhc
Q 006122 51 VYKYRTAILYLVE--------THATTIIVGETGSGKTTQIPQYLKEA 89 (660)
Q Consensus 51 i~~~~~~i~~~l~--------~~~~vii~apTGsGKT~~ip~~l~~~ 89 (660)
.....+.|.+.+. .+.++++.||+|+|||+++-.+....
T Consensus 325 ~~~~k~~i~~~~~~~~~~~~~~~~~lll~GppG~GKT~lAk~iA~~l 371 (775)
T TIGR00763 325 LKKVKERILEYLAVQKLRGKMKGPILCLVGPPGVGKTSLGKSIAKAL 371 (775)
T ss_pred hHHHHHHHHHHHHHHHhhcCCCCceEEEECCCCCCHHHHHHHHHHHh
Confidence 4445556655332 34679999999999998777665544
No 499
>TIGR03689 pup_AAA proteasome ATPase. In the Actinobacteria, as shown for Mycobacterium tuberculosis, some proteins are modified by ligation between an epsilon-amino group of a lysine side chain and the C-terminal carboxylate of the ubiquitin-like protein Pup. This modification leads to protein degradation by the archaeal-like proteasome found in the Actinobacteria. Members of this protein family belong to the AAA family of ATPases and tend to be clustered with the genes for Pup, the Pup ligase PafA, and structural components of the proteasome. This protein forms hexameric rings with ATPase activity.
Probab=92.04 E-value=1.4 Score=48.53 Aligned_cols=24 Identities=21% Similarity=0.293 Sum_probs=18.5
Q ss_pred CCEEEEEcCCCCcHHHHHHHHHHh
Q 006122 65 HATTIIVGETGSGKTTQIPQYLKE 88 (660)
Q Consensus 65 ~~~vii~apTGsGKT~~ip~~l~~ 88 (660)
.+.+++.||+|+|||+++-.+..+
T Consensus 216 p~GILLyGPPGTGKT~LAKAlA~e 239 (512)
T TIGR03689 216 PKGVLLYGPPGCGKTLIAKAVANS 239 (512)
T ss_pred CcceEEECCCCCcHHHHHHHHHHh
Confidence 456999999999999766555443
No 500
>PRK15112 antimicrobial peptide ABC system ATP-binding protein SapF; Provisional
Probab=92.04 E-value=1.3 Score=44.82 Aligned_cols=27 Identities=33% Similarity=0.409 Sum_probs=22.4
Q ss_pred HhcCCEEEEEcCCCCcHHHHHHHHHHh
Q 006122 62 VETHATTIIVGETGSGKTTQIPQYLKE 88 (660)
Q Consensus 62 l~~~~~vii~apTGsGKT~~ip~~l~~ 88 (660)
+..++.+.|.||.||||||++-.+.-.
T Consensus 36 i~~Ge~~~i~G~NGsGKSTLl~~l~Gl 62 (267)
T PRK15112 36 LREGQTLAIIGENGSGKSTLAKMLAGM 62 (267)
T ss_pred ecCCCEEEEEcCCCCCHHHHHHHHhCC
Confidence 457899999999999999988766543
Done!