Query 006122
Match_columns 660
No_of_seqs 416 out of 3449
Neff 9.1
Searched_HMMs 29240
Date Mon Mar 25 16:32:54 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/006122.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/006122hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2xau_A PRE-mRNA-splicing facto 100.0 6.1E-97 2E-101 848.5 60.6 602 27-651 72-696 (773)
2 2va8_A SSO2462, SKI2-type heli 100.0 6.6E-55 2.2E-59 503.2 34.3 554 28-618 9-655 (715)
3 2p6r_A Afuhel308 helicase; pro 100.0 6.1E-54 2.1E-58 493.5 35.0 525 50-618 25-630 (702)
4 2zj8_A DNA helicase, putative 100.0 4.6E-52 1.6E-56 479.2 29.5 550 28-620 2-646 (720)
5 3i4u_A ATP-dependent RNA helic 100.0 2.8E-41 9.5E-46 336.7 21.6 213 443-659 5-229 (270)
6 4f92_B U5 small nuclear ribonu 100.0 3.5E-39 1.2E-43 394.6 37.2 460 36-525 913-1461(1724)
7 4f92_B U5 small nuclear ribonu 100.0 1.9E-39 6.4E-44 397.0 32.9 460 51-536 80-640 (1724)
8 3eiq_A Eukaryotic initiation f 100.0 1E-40 3.6E-45 360.1 14.3 337 26-412 39-390 (414)
9 2db3_A ATP-dependent RNA helic 100.0 4.2E-39 1.4E-43 349.2 26.7 332 27-409 56-407 (434)
10 3pey_A ATP-dependent RNA helic 100.0 1.6E-38 5.6E-43 340.4 29.4 340 26-410 4-357 (395)
11 1s2m_A Putative ATP-dependent 100.0 2.6E-38 8.7E-43 339.9 28.9 340 22-413 16-369 (400)
12 1hv8_A Putative ATP-dependent 100.0 2.5E-38 8.6E-43 335.4 26.0 333 27-413 6-349 (367)
13 3fht_A ATP-dependent RNA helic 100.0 3.1E-38 1.1E-42 340.4 27.0 341 26-410 24-380 (412)
14 3l9o_A ATP-dependent RNA helic 100.0 9.1E-39 3.1E-43 378.5 24.0 351 26-409 161-597 (1108)
15 1xti_A Probable ATP-dependent 100.0 1E-37 3.6E-42 334.0 28.4 339 22-410 3-358 (391)
16 2v1x_A ATP-dependent DNA helic 100.0 3.2E-38 1.1E-42 352.3 23.4 332 29-413 23-378 (591)
17 2i4i_A ATP-dependent RNA helic 100.0 2.6E-38 8.9E-43 341.7 21.6 335 27-413 15-387 (417)
18 2j0s_A ATP-dependent RNA helic 100.0 1.1E-38 3.6E-43 344.1 18.0 339 27-412 37-386 (410)
19 3o8b_A HCV NS3 protease/helica 100.0 1.7E-38 5.8E-43 352.1 16.2 305 41-411 208-516 (666)
20 3fmp_B ATP-dependent RNA helic 100.0 2.8E-38 9.5E-43 347.8 16.4 340 27-410 92-447 (479)
21 1fuu_A Yeast initiation factor 100.0 9E-39 3.1E-43 342.5 11.6 336 28-413 22-370 (394)
22 1oyw_A RECQ helicase, ATP-depe 100.0 2E-37 6.7E-42 342.6 19.6 329 28-413 3-347 (523)
23 4a4z_A Antiviral helicase SKI2 100.0 7.5E-38 2.5E-42 367.6 12.3 328 47-407 36-490 (997)
24 2whx_A Serine protease/ntpase/ 100.0 2.7E-37 9.4E-42 345.8 14.2 317 29-407 151-476 (618)
25 2z83_A Helicase/nucleoside tri 100.0 4.9E-37 1.7E-41 334.4 15.5 293 59-409 15-313 (459)
26 2xgj_A ATP-dependent RNA helic 100.0 4.4E-36 1.5E-40 352.6 24.4 333 45-409 81-499 (1010)
27 2z0m_A 337AA long hypothetical 100.0 3.2E-36 1.1E-40 315.5 20.4 302 46-408 12-322 (337)
28 2jlq_A Serine protease subunit 100.0 7.6E-37 2.6E-41 332.4 15.9 292 57-407 11-309 (451)
29 2ykg_A Probable ATP-dependent 100.0 2.9E-36 1E-40 347.2 17.2 362 49-436 12-552 (696)
30 3fho_A ATP-dependent RNA helic 100.0 1.8E-36 6.3E-41 334.7 12.4 317 51-409 142-470 (508)
31 3i5x_A ATP-dependent RNA helic 100.0 5E-35 1.7E-39 328.5 23.7 335 34-412 79-452 (563)
32 3rc3_A ATP-dependent RNA helic 100.0 1E-34 3.5E-39 325.8 23.8 363 64-500 154-532 (677)
33 3sqw_A ATP-dependent RNA helic 100.0 5.5E-35 1.9E-39 328.6 21.2 334 34-411 28-400 (579)
34 1wp9_A ATP-dependent RNA helic 100.0 3.1E-34 1.1E-38 315.4 23.2 336 48-413 7-479 (494)
35 4a2p_A RIG-I, retinoic acid in 100.0 4.7E-34 1.6E-38 320.1 22.2 345 48-413 5-512 (556)
36 3oiy_A Reverse gyrase helicase 100.0 7.1E-35 2.4E-39 314.6 13.9 308 41-410 12-366 (414)
37 1yks_A Genome polyprotein [con 100.0 5.8E-34 2E-38 308.2 19.6 290 61-407 4-297 (440)
38 2v6i_A RNA helicase; membrane, 100.0 1.1E-33 3.6E-38 305.6 18.9 286 64-407 1-288 (431)
39 3tbk_A RIG-I helicase domain; 100.0 2E-33 6.9E-38 314.7 21.9 345 49-413 3-511 (555)
40 4a2q_A RIG-I, retinoic acid in 100.0 7.9E-33 2.7E-37 322.0 22.8 346 48-413 246-753 (797)
41 2wv9_A Flavivirin protease NS2 100.0 6.1E-33 2.1E-37 312.5 18.7 288 62-407 238-531 (673)
42 4gl2_A Interferon-induced heli 100.0 8.1E-34 2.8E-38 327.0 9.5 336 47-407 4-516 (699)
43 4a2w_A RIG-I, retinoic acid in 100.0 8.1E-32 2.8E-36 316.8 22.4 346 48-413 246-753 (936)
44 1gm5_A RECG; helicase, replica 100.0 4.9E-32 1.7E-36 308.7 10.6 306 47-407 365-695 (780)
45 2eyq_A TRCF, transcription-rep 100.0 5E-30 1.7E-34 305.7 26.1 306 48-409 601-922 (1151)
46 4ddu_A Reverse gyrase; topoiso 100.0 2.4E-30 8.1E-35 306.5 16.4 274 47-364 75-388 (1104)
47 1gku_B Reverse gyrase, TOP-RG; 100.0 2.8E-30 9.7E-35 306.1 15.8 273 47-363 54-352 (1054)
48 2fwr_A DNA repair protein RAD2 100.0 2.4E-30 8.3E-35 284.0 12.3 312 48-413 91-458 (472)
49 1tf5_A Preprotein translocase 100.0 1.3E-28 4.3E-33 275.1 23.3 320 51-410 84-546 (844)
50 2oca_A DAR protein, ATP-depend 100.0 1.3E-29 4.5E-34 280.9 12.0 313 49-407 112-453 (510)
51 2fsf_A Preprotein translocase 100.0 1.5E-27 5.1E-32 265.7 22.5 321 49-410 74-584 (853)
52 1nkt_A Preprotein translocase 99.9 1.3E-26 4.4E-31 258.3 24.6 323 49-409 111-617 (922)
53 3h1t_A Type I site-specific re 99.9 2E-27 7E-32 267.8 17.9 319 50-399 178-545 (590)
54 3llm_A ATP-dependent RNA helic 99.9 1E-25 3.4E-30 223.2 17.9 179 38-219 49-231 (235)
55 3eaq_A Heat resistant RNA depe 99.9 2.9E-26 9.8E-31 223.0 5.7 171 266-464 21-211 (212)
56 3dmq_A RNA polymerase-associat 99.9 1.9E-24 6.5E-29 254.5 14.6 331 49-409 152-615 (968)
57 3i32_A Heat resistant RNA depe 99.9 3.7E-25 1.3E-29 225.3 5.9 190 248-469 4-213 (300)
58 1z63_A Helicase of the SNF2/RA 99.9 3.5E-23 1.2E-27 228.6 18.0 327 49-413 36-457 (500)
59 3jux_A Protein translocase sub 99.9 2E-21 6.7E-26 212.2 27.6 121 259-410 459-588 (822)
60 2w00_A HSDR, R.ECOR124I; ATP-b 99.9 5.3E-22 1.8E-26 231.9 23.1 304 66-407 301-707 (1038)
61 1z3i_X Similar to RAD54-like; 99.8 1.1E-19 3.6E-24 205.8 26.8 113 274-413 414-532 (644)
62 3mwy_W Chromo domain-containin 99.8 3.2E-20 1.1E-24 215.3 17.3 113 274-413 570-688 (800)
63 1qde_A EIF4A, translation init 99.8 5.5E-20 1.9E-24 180.5 16.4 180 27-208 14-198 (224)
64 2hjv_A ATP-dependent RNA helic 99.8 3.2E-20 1.1E-24 172.5 12.1 135 247-412 10-145 (163)
65 2rb4_A ATP-dependent RNA helic 99.8 4.1E-20 1.4E-24 174.0 12.0 143 246-412 7-150 (175)
66 1t5i_A C_terminal domain of A 99.8 5E-20 1.7E-24 172.7 11.1 132 247-409 6-138 (172)
67 1vec_A ATP-dependent RNA helic 99.8 1.9E-19 6.4E-24 174.2 15.1 179 27-208 3-189 (206)
68 3ber_A Probable ATP-dependent 99.8 8.4E-20 2.9E-24 182.1 12.7 188 25-215 41-238 (249)
69 1q0u_A Bstdead; DEAD protein, 99.8 3.1E-19 1.1E-23 174.5 15.6 180 27-208 4-193 (219)
70 3bor_A Human initiation factor 99.8 3.2E-19 1.1E-23 176.6 15.1 179 27-208 30-216 (237)
71 1fuk_A Eukaryotic initiation f 99.8 4.1E-20 1.4E-24 172.2 7.9 115 270-411 24-139 (165)
72 3fe2_A Probable ATP-dependent 99.8 1.9E-19 6.4E-24 178.9 12.7 188 27-216 29-229 (242)
73 2pl3_A Probable ATP-dependent 99.8 2.7E-19 9.3E-24 177.1 13.5 186 26-215 24-223 (236)
74 2jgn_A DBX, DDX3, ATP-dependen 99.8 1.3E-19 4.4E-24 171.9 10.0 137 246-412 19-156 (185)
75 3fmo_B ATP-dependent RNA helic 99.8 6.8E-19 2.3E-23 180.3 15.6 189 26-218 91-291 (300)
76 3iuy_A Probable ATP-dependent 99.8 3.8E-19 1.3E-23 175.0 12.6 179 27-208 19-210 (228)
77 1c4o_A DNA nucleotide excision 99.8 5.4E-19 1.8E-23 199.8 14.6 113 275-409 438-550 (664)
78 1t6n_A Probable ATP-dependent 99.8 1.1E-18 3.7E-23 170.7 14.9 186 27-214 14-210 (220)
79 2d7d_A Uvrabc system protein B 99.8 4.4E-19 1.5E-23 200.5 13.7 113 275-409 444-556 (661)
80 2p6n_A ATP-dependent RNA helic 99.8 3.7E-19 1.3E-23 169.5 10.8 132 246-409 29-161 (191)
81 2gxq_A Heat resistant RNA depe 99.8 9.4E-19 3.2E-23 169.3 13.1 187 28-218 2-199 (207)
82 2oxc_A Probable ATP-dependent 99.8 8.1E-19 2.8E-23 172.9 12.1 185 26-215 23-216 (230)
83 3ly5_A ATP-dependent RNA helic 99.8 1.3E-18 4.4E-23 174.9 10.5 184 28-214 53-252 (262)
84 2yjt_D ATP-dependent RNA helic 99.6 5.2E-20 1.8E-24 172.4 0.0 117 269-412 23-140 (170)
85 3dkp_A Probable ATP-dependent 99.8 5.1E-18 1.7E-22 168.9 14.2 180 33-215 35-231 (245)
86 1wrb_A DJVLGB; RNA helicase, D 99.7 6.1E-18 2.1E-22 169.1 13.0 186 27-215 23-230 (253)
87 2ipc_A Preprotein translocase 99.7 3.9E-15 1.3E-19 165.8 26.2 119 49-174 79-212 (997)
88 3b6e_A Interferon-induced heli 99.7 8.5E-17 2.9E-21 156.5 9.7 159 45-205 28-216 (216)
89 2vl7_A XPD; helicase, unknown 99.6 1.9E-15 6.4E-20 167.4 15.1 128 261-405 370-518 (540)
90 1rif_A DAR protein, DNA helica 99.5 3.4E-14 1.1E-18 144.3 9.7 147 49-206 112-262 (282)
91 3crv_A XPD/RAD3 related DNA he 99.5 1.9E-12 6.5E-17 143.8 21.8 123 258-398 376-519 (551)
92 2fz4_A DNA repair protein RAD2 99.4 8.7E-13 3E-17 130.0 14.9 137 49-207 92-229 (237)
93 1z5z_A Helicase of the SNF2/RA 99.4 4.5E-13 1.5E-17 134.4 6.3 113 275-413 111-228 (271)
94 4a15_A XPD helicase, ATP-depen 99.2 3.9E-10 1.3E-14 126.2 18.2 132 259-405 432-581 (620)
95 1w36_D RECD, exodeoxyribonucle 98.1 9.6E-06 3.3E-10 90.6 12.2 141 53-205 152-298 (608)
96 3upu_A ATP-dependent DNA helic 97.8 8.5E-05 2.9E-09 80.2 10.6 57 51-107 26-87 (459)
97 3e1s_A Exodeoxyribonuclease V, 97.7 6.3E-05 2.1E-09 83.2 9.5 59 49-108 188-246 (574)
98 2b8t_A Thymidine kinase; deoxy 97.5 0.00051 1.8E-08 65.9 11.5 115 63-204 10-124 (223)
99 3kl4_A SRP54, signal recogniti 97.5 0.00065 2.2E-08 71.8 12.1 133 66-216 98-235 (433)
100 3ec2_A DNA replication protein 97.3 0.0017 5.7E-08 60.1 12.0 37 64-100 37-73 (180)
101 3dm5_A SRP54, signal recogniti 97.1 0.0029 9.8E-08 66.9 12.5 133 65-216 100-236 (443)
102 2orw_A Thymidine kinase; TMTK, 97.1 0.0012 4.1E-08 61.4 8.4 39 64-103 2-40 (184)
103 3te6_A Regulatory protein SIR3 97.1 0.0029 1E-07 64.0 11.7 123 64-207 44-174 (318)
104 2o0j_A Terminase, DNA packagin 97.1 0.011 3.9E-07 61.3 16.0 152 49-216 162-324 (385)
105 1xx6_A Thymidine kinase; NESG, 97.1 0.0025 8.4E-08 59.6 9.9 39 64-103 7-45 (191)
106 3n70_A Transport activator; si 96.9 0.0056 1.9E-07 54.4 10.2 32 55-86 14-45 (145)
107 4b3f_X DNA-binding protein smu 96.9 0.0023 7.7E-08 72.1 9.3 65 51-117 190-255 (646)
108 2kjq_A DNAA-related protein; s 96.8 0.00076 2.6E-08 60.5 4.1 26 64-89 35-60 (149)
109 1vma_A Cell division protein F 96.8 0.012 4.1E-07 59.3 13.2 122 65-206 104-234 (306)
110 1njg_A DNA polymerase III subu 96.8 0.01 3.5E-07 57.0 12.3 35 55-89 32-69 (250)
111 2chg_A Replication factor C sm 96.8 0.013 4.5E-07 55.4 12.8 33 56-88 27-61 (226)
112 3lfu_A DNA helicase II; SF1 he 96.7 0.006 2.1E-07 68.7 11.3 68 50-120 9-79 (647)
113 2w58_A DNAI, primosome compone 96.7 0.006 2.1E-07 57.4 9.3 35 66-101 55-89 (202)
114 2j9r_A Thymidine kinase; TK1, 96.7 0.0041 1.4E-07 58.7 7.9 40 64-104 27-66 (214)
115 1fnn_A CDC6P, cell division co 96.6 0.0052 1.8E-07 64.2 9.5 116 67-206 46-169 (389)
116 1a5t_A Delta prime, HOLB; zinc 96.6 0.011 3.6E-07 60.7 11.1 51 151-203 95-145 (334)
117 3cpe_A Terminase, DNA packagin 96.5 0.038 1.3E-06 61.3 15.7 69 49-118 162-231 (592)
118 2px0_A Flagellar biosynthesis 96.5 0.0098 3.3E-07 59.7 9.8 128 64-215 104-233 (296)
119 3vkw_A Replicase large subunit 96.4 0.007 2.4E-07 63.7 8.6 108 65-205 161-269 (446)
120 1jr3_A DNA polymerase III subu 96.4 0.013 4.3E-07 60.9 10.7 52 150-203 105-156 (373)
121 3bos_A Putative DNA replicatio 96.4 0.0075 2.6E-07 58.1 8.2 26 64-89 51-76 (242)
122 2bjv_A PSP operon transcriptio 96.3 0.016 5.4E-07 57.1 10.3 28 61-88 25-52 (265)
123 3co5_A Putative two-component 96.3 0.0096 3.3E-07 52.7 7.8 30 54-83 16-45 (143)
124 1l8q_A Chromosomal replication 96.3 0.022 7.4E-07 58.0 11.6 36 65-101 37-72 (324)
125 3e2i_A Thymidine kinase; Zn-bi 96.2 0.0061 2.1E-07 57.4 6.3 41 63-104 26-66 (219)
126 2gk6_A Regulator of nonsense t 96.2 0.0091 3.1E-07 66.8 9.0 66 51-117 181-246 (624)
127 1w4r_A Thymidine kinase; type 96.2 0.0083 2.8E-07 55.7 6.8 39 64-103 19-57 (195)
128 3e70_C DPA, signal recognition 96.1 0.014 4.7E-07 59.5 9.0 124 64-206 128-253 (328)
129 2qgz_A Helicase loader, putati 96.1 0.0075 2.6E-07 61.0 6.9 38 65-102 152-189 (308)
130 2orv_A Thymidine kinase; TP4A 96.1 0.015 5.3E-07 55.3 8.3 40 64-104 18-57 (234)
131 1ls1_A Signal recognition part 96.0 0.04 1.4E-06 55.2 11.6 124 65-206 98-222 (295)
132 3syl_A Protein CBBX; photosynt 95.9 0.02 6.8E-07 57.7 9.1 41 165-205 131-178 (309)
133 1iqp_A RFCS; clamp loader, ext 95.9 0.034 1.1E-06 56.3 10.6 33 56-88 35-69 (327)
134 3u61_B DNA polymerase accessor 95.9 0.057 2E-06 54.8 12.3 34 56-89 36-72 (324)
135 2xzl_A ATP-dependent helicase 95.9 0.012 4E-07 67.6 7.7 66 51-117 361-426 (802)
136 2wjy_A Regulator of nonsense t 95.9 0.017 5.7E-07 66.2 9.0 66 51-117 357-422 (800)
137 2v1u_A Cell division control p 95.8 0.0083 2.8E-07 62.5 5.9 26 64-89 43-68 (387)
138 2gno_A DNA polymerase III, gam 95.8 0.036 1.2E-06 55.9 10.1 51 151-203 69-119 (305)
139 1sxj_E Activator 1 40 kDa subu 95.7 0.05 1.7E-06 55.9 11.0 43 162-206 132-174 (354)
140 2qen_A Walker-type ATPase; unk 95.7 0.034 1.2E-06 56.8 9.7 36 54-89 20-55 (350)
141 1sxj_D Activator 1 41 kDa subu 95.6 0.011 3.8E-07 60.8 5.9 33 56-88 47-81 (353)
142 2qby_B CDC6 homolog 3, cell di 95.5 0.017 5.7E-07 60.2 6.8 24 65-88 45-68 (384)
143 1ojl_A Transcriptional regulat 95.5 0.02 7E-07 57.7 7.1 27 62-88 22-48 (304)
144 1sxj_C Activator 1 40 kDa subu 95.4 0.041 1.4E-06 56.4 9.2 33 56-88 35-69 (340)
145 2r6a_A DNAB helicase, replicat 95.4 0.021 7.1E-07 61.2 7.1 48 56-103 194-241 (454)
146 1xwi_A SKD1 protein; VPS4B, AA 95.3 0.059 2E-06 54.7 9.8 25 65-89 45-69 (322)
147 1hqc_A RUVB; extended AAA-ATPa 95.3 0.13 4.4E-06 52.0 12.4 24 65-88 38-61 (324)
148 2z4s_A Chromosomal replication 95.3 0.13 4.4E-06 54.7 12.7 37 65-101 130-167 (440)
149 3h4m_A Proteasome-activating n 95.2 0.027 9.3E-07 56.0 6.8 26 63-88 49-74 (285)
150 2zpa_A Uncharacterized protein 95.2 0.039 1.3E-06 61.0 8.5 109 53-206 178-288 (671)
151 3pfi_A Holliday junction ATP-d 95.2 0.12 4E-06 52.8 11.6 23 66-88 56-78 (338)
152 1w5s_A Origin recognition comp 95.1 0.026 8.9E-07 59.3 6.8 25 65-89 50-76 (412)
153 2w0m_A SSO2452; RECA, SSPF, un 95.1 0.016 5.5E-07 55.5 4.5 41 62-103 20-60 (235)
154 2qby_A CDC6 homolog 1, cell di 95.1 0.017 5.9E-07 60.0 5.0 25 65-89 45-69 (386)
155 2qz4_A Paraplegin; AAA+, SPG7, 95.0 0.055 1.9E-06 52.9 8.4 26 64-89 38-63 (262)
156 3b9p_A CG5977-PA, isoform A; A 95.0 0.081 2.8E-06 52.9 9.6 25 65-89 54-78 (297)
157 2ffh_A Protein (FFH); SRP54, s 94.9 0.13 4.5E-06 54.0 11.4 124 65-206 98-222 (425)
158 3vfd_A Spastin; ATPase, microt 94.8 0.076 2.6E-06 55.5 9.3 24 65-88 148-171 (389)
159 1sxj_B Activator 1 37 kDa subu 94.8 0.081 2.8E-06 53.4 9.2 32 57-88 32-65 (323)
160 2yhs_A FTSY, cell division pro 94.5 0.076 2.6E-06 56.6 8.3 41 65-106 293-334 (503)
161 3eie_A Vacuolar protein sortin 94.5 0.059 2E-06 54.7 7.3 25 65-89 51-75 (322)
162 1d2n_A N-ethylmaleimide-sensit 94.5 0.075 2.6E-06 52.4 7.8 23 66-88 65-87 (272)
163 3k1j_A LON protease, ATP-depen 94.5 0.43 1.5E-05 52.9 14.7 35 55-89 50-84 (604)
164 1zu4_A FTSY; GTPase, signal re 94.4 0.31 1E-05 49.3 12.1 43 65-108 105-148 (320)
165 1sxj_A Activator 1 95 kDa subu 94.3 0.2 6.8E-06 54.5 11.4 24 66-89 78-101 (516)
166 2fna_A Conserved hypothetical 94.2 0.56 1.9E-05 47.6 14.1 32 56-89 23-54 (357)
167 2qp9_X Vacuolar protein sortin 94.2 0.071 2.4E-06 55.0 7.0 25 65-89 84-108 (355)
168 3b85_A Phosphate starvation-in 94.0 0.042 1.4E-06 52.0 4.4 39 50-88 7-45 (208)
169 3pvs_A Replication-associated 93.9 0.077 2.6E-06 56.5 6.7 32 58-89 41-74 (447)
170 1j8m_F SRP54, signal recogniti 93.8 0.21 7.3E-06 49.9 9.5 123 65-206 98-224 (297)
171 2eyu_A Twitching motility prot 93.5 0.041 1.4E-06 54.0 3.6 27 62-88 22-48 (261)
172 2j37_W Signal recognition part 93.5 0.38 1.3E-05 51.7 11.3 122 67-206 103-225 (504)
173 2chq_A Replication factor C sm 93.2 0.077 2.7E-06 53.4 5.3 22 67-88 40-61 (319)
174 4b4t_J 26S protease regulatory 93.2 0.16 5.5E-06 52.7 7.6 25 65-89 182-206 (405)
175 2zan_A Vacuolar protein sortin 93.2 0.14 4.8E-06 54.5 7.4 25 65-89 167-191 (444)
176 1kgd_A CASK, peripheral plasma 93.2 0.056 1.9E-06 49.7 3.7 25 64-88 4-28 (180)
177 2xxa_A Signal recognition part 93.1 0.32 1.1E-05 51.3 9.9 123 66-206 101-225 (433)
178 3jvv_A Twitching mobility prot 93.1 0.069 2.4E-06 54.9 4.6 42 62-103 120-161 (356)
179 3tr0_A Guanylate kinase, GMP k 92.8 0.062 2.1E-06 50.3 3.5 27 62-88 4-30 (205)
180 3hgt_A HDA1 complex subunit 3; 92.7 0.42 1.4E-05 47.9 9.5 111 274-413 123-241 (328)
181 1lvg_A Guanylate kinase, GMP k 92.7 0.059 2E-06 50.4 3.2 26 63-88 2-27 (198)
182 3pxi_A Negative regulator of g 92.6 0.37 1.3E-05 55.1 10.3 22 67-88 523-544 (758)
183 2gza_A Type IV secretion syste 92.5 0.11 3.7E-06 53.7 5.1 43 57-101 167-209 (361)
184 3b9q_A Chloroplast SRP recepto 92.4 0.14 4.8E-06 51.4 5.7 44 64-108 99-143 (302)
185 2v3c_C SRP54, signal recogniti 92.4 0.06 2.1E-06 56.9 3.1 24 66-89 100-123 (432)
186 2zts_A Putative uncharacterize 92.4 0.061 2.1E-06 52.0 2.9 42 62-103 27-68 (251)
187 4b4t_H 26S protease regulatory 92.4 0.22 7.5E-06 52.5 7.3 26 64-89 242-267 (467)
188 2oap_1 GSPE-2, type II secreti 92.3 0.13 4.4E-06 55.7 5.6 33 56-88 251-283 (511)
189 2ce7_A Cell division protein F 92.3 0.17 5.9E-06 54.0 6.5 24 66-89 50-73 (476)
190 4b4t_I 26S protease regulatory 92.2 0.24 8.1E-06 51.8 7.2 25 65-89 216-240 (437)
191 3tau_A Guanylate kinase, GMP k 92.1 0.089 3.1E-06 49.6 3.7 26 63-88 6-31 (208)
192 4b4t_M 26S protease regulatory 92.1 0.19 6.7E-06 52.8 6.5 25 65-89 215-239 (434)
193 2ehv_A Hypothetical protein PH 92.0 0.073 2.5E-06 51.5 2.9 42 61-102 26-67 (251)
194 1z6g_A Guanylate kinase; struc 92.0 0.084 2.9E-06 50.2 3.3 28 62-89 20-47 (218)
195 2ewv_A Twitching motility prot 92.0 0.092 3.2E-06 54.4 3.8 42 62-103 133-174 (372)
196 3ney_A 55 kDa erythrocyte memb 91.9 0.1 3.5E-06 48.7 3.7 26 64-89 18-43 (197)
197 1uaa_A REP helicase, protein ( 91.9 0.19 6.5E-06 56.6 6.7 66 51-120 3-72 (673)
198 4b4t_L 26S protease subunit RP 91.9 0.24 8.3E-06 52.1 7.0 25 65-89 215-239 (437)
199 1jbk_A CLPB protein; beta barr 91.8 0.2 7E-06 45.6 5.8 35 54-88 30-66 (195)
200 1p9r_A General secretion pathw 91.8 0.22 7.4E-06 52.4 6.5 37 63-100 165-201 (418)
201 2cvh_A DNA repair and recombin 91.7 0.1 3.5E-06 49.3 3.7 39 61-103 16-54 (220)
202 1znw_A Guanylate kinase, GMP k 91.7 0.11 3.6E-06 49.0 3.6 28 61-88 16-43 (207)
203 4gp7_A Metallophosphoesterase; 91.7 0.052 1.8E-06 49.5 1.4 22 63-84 7-28 (171)
204 1n0w_A DNA repair protein RAD5 91.7 0.14 4.7E-06 49.2 4.5 42 62-103 21-67 (243)
205 1s96_A Guanylate kinase, GMP k 91.6 0.11 3.9E-06 49.4 3.7 29 61-89 12-40 (219)
206 2pt7_A CAG-ALFA; ATPase, prote 91.6 0.14 4.7E-06 52.2 4.5 31 58-88 164-194 (330)
207 1cr0_A DNA primase/helicase; R 91.5 0.11 3.9E-06 51.8 3.9 45 58-102 28-72 (296)
208 1zp6_A Hypothetical protein AT 91.5 0.072 2.5E-06 49.2 2.2 26 62-87 6-31 (191)
209 4b4t_K 26S protease regulatory 91.5 0.37 1.3E-05 50.6 7.8 25 65-89 206-230 (428)
210 2j41_A Guanylate kinase; GMP, 91.4 0.11 3.8E-06 48.6 3.4 26 62-87 3-28 (207)
211 2dr3_A UPF0273 protein PH0284; 91.4 0.12 4.1E-06 49.8 3.8 41 62-103 20-60 (247)
212 3a00_A Guanylate kinase, GMP k 91.4 0.11 3.6E-06 48.0 3.2 24 65-88 1-24 (186)
213 2og2_A Putative signal recogni 91.3 0.21 7.2E-06 51.3 5.6 43 65-108 157-200 (359)
214 3hu3_A Transitional endoplasmi 91.1 0.66 2.2E-05 49.8 9.6 25 64-88 237-261 (489)
215 2p65_A Hypothetical protein PF 90.9 0.22 7.6E-06 45.2 4.9 34 56-89 32-67 (187)
216 3vaa_A Shikimate kinase, SK; s 90.7 0.17 5.8E-06 47.2 4.0 28 62-89 22-49 (199)
217 1rj9_A FTSY, signal recognitio 90.5 0.22 7.6E-06 49.9 4.9 37 64-101 101-137 (304)
218 1pjr_A PCRA; DNA repair, DNA r 90.4 0.36 1.2E-05 54.8 7.0 67 50-119 11-80 (724)
219 2qor_A Guanylate kinase; phosp 90.2 0.14 4.8E-06 48.0 2.9 28 62-89 9-36 (204)
220 1htw_A HI0065; nucleotide-bind 89.7 0.28 9.7E-06 43.9 4.3 27 63-89 31-57 (158)
221 3lnc_A Guanylate kinase, GMP k 89.6 0.1 3.5E-06 50.0 1.4 25 62-86 24-48 (231)
222 2dhr_A FTSH; AAA+ protein, hex 89.6 0.93 3.2E-05 48.7 9.0 24 66-89 65-88 (499)
223 3tif_A Uncharacterized ABC tra 89.5 0.15 5E-06 49.2 2.5 24 63-86 29-52 (235)
224 1ex7_A Guanylate kinase; subst 89.5 0.22 7.7E-06 45.9 3.6 24 66-89 2-25 (186)
225 3umf_A Adenylate kinase; rossm 89.5 0.18 6.3E-06 47.7 3.1 29 62-90 26-54 (217)
226 1kag_A SKI, shikimate kinase I 89.4 0.21 7.1E-06 45.1 3.4 26 64-89 3-28 (173)
227 4eun_A Thermoresistant glucoki 89.4 0.23 7.9E-06 46.3 3.7 27 63-89 27-53 (200)
228 3a8t_A Adenylate isopentenyltr 89.3 0.18 6E-06 51.1 2.9 24 64-87 39-62 (339)
229 3cmu_A Protein RECA, recombina 89.3 0.31 1.1E-05 60.5 5.6 40 64-104 1426-1465(2050)
230 3exa_A TRNA delta(2)-isopenten 89.2 0.21 7.1E-06 50.0 3.3 24 65-88 3-26 (322)
231 1gm5_A RECG; helicase, replica 89.2 0.45 1.5E-05 54.2 6.5 78 276-358 417-495 (780)
232 4aby_A DNA repair protein RECN 89.2 0.63 2.2E-05 48.8 7.3 39 166-205 317-355 (415)
233 1qvr_A CLPB protein; coiled co 89.1 0.45 1.5E-05 55.2 6.6 33 56-88 180-214 (854)
234 3trf_A Shikimate kinase, SK; a 89.0 0.28 9.5E-06 44.9 3.9 25 65-89 5-29 (185)
235 3lw7_A Adenylate kinase relate 88.9 0.22 7.7E-06 44.8 3.2 20 66-85 2-21 (179)
236 3c8u_A Fructokinase; YP_612366 88.9 0.2 6.7E-06 47.1 2.9 25 64-88 21-45 (208)
237 2z43_A DNA repair and recombin 88.9 0.3 1E-05 49.5 4.3 43 62-104 104-151 (324)
238 3bh0_A DNAB-like replicative h 88.7 0.28 9.6E-06 49.5 4.0 47 56-103 59-105 (315)
239 1nlf_A Regulatory protein REPA 88.7 0.28 9.7E-06 48.4 4.0 27 62-88 27-53 (279)
240 3im1_A Protein SNU246, PRE-mRN 88.6 2 6.7E-05 43.4 10.3 91 468-560 1-102 (328)
241 3m6a_A ATP-dependent protease 88.6 0.55 1.9E-05 51.3 6.5 25 65-89 108-132 (543)
242 2cbz_A Multidrug resistance-as 88.6 0.17 5.7E-06 48.8 2.1 25 63-87 29-53 (237)
243 2ze6_A Isopentenyl transferase 88.6 0.27 9.2E-06 47.9 3.6 23 67-89 3-25 (253)
244 2v9p_A Replication protein E1; 88.6 0.25 8.5E-06 49.5 3.4 29 61-89 122-150 (305)
245 4a74_A DNA repair and recombin 88.5 0.16 5.4E-06 48.3 1.9 43 61-103 21-68 (231)
246 1kht_A Adenylate kinase; phosp 88.4 0.29 1E-05 44.8 3.7 25 65-89 3-27 (192)
247 2c95_A Adenylate kinase 1; tra 88.4 0.36 1.2E-05 44.5 4.3 28 62-89 6-33 (196)
248 1zd8_A GTP:AMP phosphotransfer 88.4 0.32 1.1E-05 46.3 4.0 27 63-89 5-31 (227)
249 3gfo_A Cobalt import ATP-bindi 88.4 0.19 6.5E-06 49.6 2.4 26 62-87 31-56 (275)
250 1qhx_A CPT, protein (chloramph 88.3 0.35 1.2E-05 43.8 4.1 25 65-89 3-27 (178)
251 1v5w_A DMC1, meiotic recombina 88.3 0.4 1.4E-05 49.0 4.9 43 62-104 119-166 (343)
252 2pcj_A ABC transporter, lipopr 88.2 0.2 6.7E-06 47.9 2.3 24 63-86 28-51 (224)
253 3cm0_A Adenylate kinase; ATP-b 88.2 0.25 8.5E-06 45.2 3.0 26 64-89 3-28 (186)
254 3foz_A TRNA delta(2)-isopenten 88.1 0.3 1E-05 48.7 3.6 23 66-88 11-33 (316)
255 3cf2_A TER ATPase, transitiona 88.0 0.59 2E-05 53.1 6.5 25 65-89 238-262 (806)
256 3kb2_A SPBC2 prophage-derived 88.0 0.33 1.1E-05 43.6 3.7 23 67-89 3-25 (173)
257 3asz_A Uridine kinase; cytidin 87.9 0.26 8.9E-06 46.2 3.0 26 63-88 4-29 (211)
258 1e9r_A Conjugal transfer prote 87.9 0.31 1.1E-05 51.6 3.9 42 64-106 52-93 (437)
259 3tqc_A Pantothenate kinase; bi 87.9 0.87 3E-05 45.8 7.0 22 67-88 94-115 (321)
260 2bwj_A Adenylate kinase 5; pho 87.9 0.45 1.5E-05 43.9 4.6 29 61-89 8-36 (199)
261 2bdt_A BH3686; alpha-beta prot 87.8 0.23 8E-06 45.6 2.6 22 66-87 3-24 (189)
262 2qmh_A HPR kinase/phosphorylas 87.8 0.27 9.2E-06 45.7 2.9 23 65-87 34-56 (205)
263 1sgw_A Putative ABC transporte 87.8 0.2 6.9E-06 47.4 2.1 24 63-86 33-56 (214)
264 2q6t_A DNAB replication FORK h 87.8 0.29 9.8E-06 52.1 3.5 64 56-121 191-255 (444)
265 2ff7_A Alpha-hemolysin translo 87.7 0.22 7.7E-06 48.2 2.4 25 63-87 33-57 (247)
266 2pze_A Cystic fibrosis transme 87.7 0.21 7.1E-06 47.9 2.1 25 63-87 32-56 (229)
267 2zu0_C Probable ATP-dependent 87.6 0.25 8.4E-06 48.6 2.7 26 62-87 43-68 (267)
268 1knq_A Gluconate kinase; ALFA/ 87.6 0.29 1E-05 44.3 3.0 24 65-88 8-31 (175)
269 1ye8_A Protein THEP1, hypothet 87.5 0.33 1.1E-05 44.4 3.4 22 67-88 2-23 (178)
270 3uie_A Adenylyl-sulfate kinase 87.5 0.29 9.8E-06 45.6 2.9 27 63-89 23-49 (200)
271 2d2e_A SUFC protein; ABC-ATPas 87.4 0.25 8.6E-06 48.0 2.6 26 62-87 26-51 (250)
272 4g1u_C Hemin import ATP-bindin 87.3 0.24 8.4E-06 48.6 2.5 25 63-87 35-59 (266)
273 1ly1_A Polynucleotide kinase; 87.3 0.34 1.2E-05 43.9 3.4 22 66-87 3-24 (181)
274 4a1f_A DNAB helicase, replicat 87.3 0.35 1.2E-05 49.2 3.6 57 56-115 37-93 (338)
275 2ghi_A Transport protein; mult 87.3 0.25 8.6E-06 48.3 2.5 25 63-87 44-68 (260)
276 3sr0_A Adenylate kinase; phosp 87.2 0.37 1.3E-05 45.2 3.6 24 67-90 2-25 (206)
277 1b0u_A Histidine permease; ABC 87.2 0.26 8.8E-06 48.3 2.5 24 63-86 30-53 (262)
278 4ag6_A VIRB4 ATPase, type IV s 87.2 0.47 1.6E-05 49.4 4.7 40 64-104 34-73 (392)
279 3iij_A Coilin-interacting nucl 87.2 0.38 1.3E-05 43.8 3.6 26 64-89 10-35 (180)
280 1g6h_A High-affinity branched- 87.2 0.25 8.5E-06 48.3 2.4 25 62-86 30-54 (257)
281 1ji0_A ABC transporter; ATP bi 87.1 0.25 8.7E-06 47.6 2.4 24 63-86 30-53 (240)
282 3nh6_A ATP-binding cassette SU 87.1 0.18 6.3E-06 50.5 1.4 25 63-87 78-102 (306)
283 1mv5_A LMRA, multidrug resista 87.1 0.22 7.7E-06 48.1 2.0 25 63-87 26-50 (243)
284 1ofh_A ATP-dependent HSL prote 87.0 0.64 2.2E-05 46.3 5.5 25 65-89 50-74 (310)
285 1qvr_A CLPB protein; coiled co 87.0 0.71 2.4E-05 53.5 6.5 23 66-88 589-611 (854)
286 1vpl_A ABC transporter, ATP-bi 87.0 0.27 9.2E-06 47.9 2.5 24 63-86 39-62 (256)
287 2olj_A Amino acid ABC transpor 86.9 0.27 9.3E-06 48.1 2.5 24 63-86 48-71 (263)
288 2v54_A DTMP kinase, thymidylat 86.9 0.31 1.1E-05 45.3 2.9 25 64-88 3-27 (204)
289 1gvn_B Zeta; postsegregational 86.8 0.58 2E-05 46.4 5.0 25 65-89 33-57 (287)
290 1g5t_A COB(I)alamin adenosyltr 86.8 7.2 0.00025 35.9 11.9 36 64-100 27-62 (196)
291 2i3b_A HCR-ntpase, human cance 86.7 0.38 1.3E-05 44.5 3.3 25 65-89 1-25 (189)
292 3bgw_A DNAB-like replicative h 86.7 0.34 1.2E-05 51.4 3.3 47 56-103 188-234 (444)
293 3aez_A Pantothenate kinase; tr 86.6 0.46 1.6E-05 47.8 4.1 26 62-87 87-112 (312)
294 3tlx_A Adenylate kinase 2; str 86.6 0.46 1.6E-05 45.9 3.9 26 64-89 28-53 (243)
295 2ixe_A Antigen peptide transpo 86.6 0.29 9.8E-06 48.2 2.5 26 62-87 42-67 (271)
296 1xjc_A MOBB protein homolog; s 86.6 0.63 2.1E-05 42.1 4.5 24 66-89 5-28 (169)
297 2r44_A Uncharacterized protein 86.5 0.59 2E-05 47.3 4.9 37 53-89 34-70 (331)
298 3kta_A Chromosome segregation 86.5 0.44 1.5E-05 43.4 3.6 23 66-88 27-49 (182)
299 3u4q_A ATP-dependent helicase/ 86.5 0.77 2.6E-05 55.4 6.6 69 48-119 8-81 (1232)
300 2qi9_C Vitamin B12 import ATP- 86.5 0.29 1E-05 47.5 2.5 25 63-87 24-48 (249)
301 3hr8_A Protein RECA; alpha and 86.4 0.39 1.3E-05 49.2 3.4 42 62-104 58-99 (356)
302 2ihy_A ABC transporter, ATP-bi 86.3 0.3 1E-05 48.3 2.5 25 62-86 44-68 (279)
303 2nq2_C Hypothetical ABC transp 86.3 0.3 1E-05 47.6 2.4 25 63-87 29-53 (253)
304 1y63_A LMAJ004144AAA protein; 86.3 0.5 1.7E-05 43.3 3.9 25 64-88 9-33 (184)
305 1f2t_A RAD50 ABC-ATPase; DNA d 86.3 0.47 1.6E-05 41.9 3.5 21 66-86 24-44 (149)
306 1zuh_A Shikimate kinase; alpha 86.2 0.5 1.7E-05 42.4 3.8 25 65-89 7-31 (168)
307 2yz2_A Putative ABC transporte 86.2 0.31 1.1E-05 47.8 2.5 25 62-86 30-54 (266)
308 2rhm_A Putative kinase; P-loop 86.2 0.42 1.4E-05 43.9 3.3 26 64-89 4-29 (193)
309 1q57_A DNA primase/helicase; d 86.2 0.37 1.3E-05 52.1 3.4 49 55-103 232-280 (503)
310 1np6_A Molybdopterin-guanine d 86.0 0.82 2.8E-05 41.6 5.1 24 65-88 6-29 (174)
311 2f1r_A Molybdopterin-guanine d 86.0 0.28 9.7E-06 44.5 1.9 24 66-89 3-26 (171)
312 3lda_A DNA repair protein RAD5 86.0 0.54 1.9E-05 49.0 4.3 41 63-103 176-221 (400)
313 2zr9_A Protein RECA, recombina 85.9 0.45 1.5E-05 48.7 3.7 42 61-103 57-98 (349)
314 1cke_A CK, MSSA, protein (cyti 85.9 0.45 1.5E-05 45.1 3.4 25 65-89 5-29 (227)
315 3crm_A TRNA delta(2)-isopenten 85.8 0.5 1.7E-05 47.6 3.8 23 66-88 6-28 (323)
316 1pzn_A RAD51, DNA repair and r 85.7 0.46 1.6E-05 48.6 3.6 40 63-102 129-173 (349)
317 1in4_A RUVB, holliday junction 85.7 0.61 2.1E-05 47.4 4.5 24 66-89 52-75 (334)
318 3d3q_A TRNA delta(2)-isopenten 85.7 0.49 1.7E-05 47.9 3.7 23 66-88 8-30 (340)
319 3hws_A ATP-dependent CLP prote 85.6 0.86 3E-05 46.8 5.7 26 64-89 50-75 (363)
320 2ius_A DNA translocase FTSK; n 85.5 0.8 2.7E-05 49.2 5.5 25 63-87 165-189 (512)
321 2bbw_A Adenylate kinase 4, AK4 85.5 0.51 1.7E-05 45.5 3.7 25 65-89 27-51 (246)
322 3t61_A Gluconokinase; PSI-biol 85.5 0.47 1.6E-05 44.1 3.3 24 66-89 19-42 (202)
323 4eaq_A DTMP kinase, thymidylat 85.5 0.76 2.6E-05 43.9 4.8 27 64-90 25-51 (229)
324 3fb4_A Adenylate kinase; psych 85.4 0.52 1.8E-05 44.3 3.6 23 67-89 2-24 (216)
325 3dl0_A Adenylate kinase; phosp 85.4 0.56 1.9E-05 44.1 3.8 23 67-89 2-24 (216)
326 2qt1_A Nicotinamide riboside k 85.4 0.34 1.2E-05 45.3 2.3 25 63-87 19-43 (207)
327 1nks_A Adenylate kinase; therm 85.1 0.55 1.9E-05 43.0 3.5 23 67-89 3-25 (194)
328 1lv7_A FTSH; alpha/beta domain 85.0 0.94 3.2E-05 43.8 5.4 25 65-89 45-69 (257)
329 1tev_A UMP-CMP kinase; ploop, 85.0 0.54 1.8E-05 43.1 3.4 25 65-89 3-27 (196)
330 3fvq_A Fe(3+) IONS import ATP- 85.0 0.38 1.3E-05 49.3 2.5 25 63-87 28-52 (359)
331 2onk_A Molybdate/tungstate ABC 84.9 0.4 1.4E-05 46.2 2.5 24 63-87 23-46 (240)
332 2pez_A Bifunctional 3'-phospho 84.9 0.51 1.8E-05 42.9 3.2 24 64-87 4-27 (179)
333 1zak_A Adenylate kinase; ATP:A 84.7 0.51 1.7E-05 44.7 3.2 25 65-89 5-29 (222)
334 2plr_A DTMP kinase, probable t 84.7 0.56 1.9E-05 43.7 3.5 26 65-90 4-29 (213)
335 2jaq_A Deoxyguanosine kinase; 84.7 0.61 2.1E-05 43.2 3.7 23 67-89 2-24 (205)
336 2jeo_A Uridine-cytidine kinase 84.6 0.46 1.6E-05 45.8 2.9 26 62-87 22-47 (245)
337 1aky_A Adenylate kinase; ATP:A 84.5 0.69 2.3E-05 43.7 4.0 25 65-89 4-28 (220)
338 4f4c_A Multidrug resistance pr 84.5 0.59 2E-05 56.7 4.3 27 63-89 442-468 (1321)
339 1tf7_A KAIC; homohexamer, hexa 84.5 0.41 1.4E-05 52.0 2.7 41 61-101 35-75 (525)
340 1rz3_A Hypothetical protein rb 84.5 0.98 3.3E-05 42.0 5.0 23 65-87 22-44 (201)
341 1nij_A Hypothetical protein YJ 84.4 0.61 2.1E-05 47.0 3.8 23 66-88 5-27 (318)
342 3cf0_A Transitional endoplasmi 84.4 1.1 3.7E-05 44.7 5.6 27 63-89 47-73 (301)
343 2yvu_A Probable adenylyl-sulfa 84.4 0.78 2.7E-05 41.9 4.2 26 64-89 12-37 (186)
344 1z47_A CYSA, putative ABC-tran 84.4 0.43 1.5E-05 48.8 2.6 25 63-87 39-63 (355)
345 2bbs_A Cystic fibrosis transme 84.4 0.4 1.4E-05 47.6 2.3 25 63-87 62-86 (290)
346 3rlf_A Maltose/maltodextrin im 84.3 0.45 1.5E-05 49.1 2.7 25 63-87 27-51 (381)
347 1nn5_A Similar to deoxythymidy 84.2 0.57 2E-05 43.8 3.3 26 63-88 7-32 (215)
348 2i1q_A DNA repair and recombin 84.1 0.64 2.2E-05 46.9 3.8 28 62-89 95-122 (322)
349 1u94_A RECA protein, recombina 84.1 0.64 2.2E-05 47.6 3.8 41 62-103 60-100 (356)
350 4e22_A Cytidylate kinase; P-lo 84.0 0.74 2.5E-05 44.6 4.1 27 63-89 25-51 (252)
351 1ukz_A Uridylate kinase; trans 84.0 0.71 2.4E-05 42.8 3.8 24 66-89 16-39 (203)
352 3nbx_X ATPase RAVA; AAA+ ATPas 84.0 0.83 2.8E-05 49.1 4.8 34 54-87 30-63 (500)
353 2yyz_A Sugar ABC transporter, 83.9 0.47 1.6E-05 48.7 2.6 25 63-87 27-51 (359)
354 3eph_A TRNA isopentenyltransfe 83.8 0.58 2E-05 48.5 3.3 23 66-88 3-25 (409)
355 2it1_A 362AA long hypothetical 83.6 0.5 1.7E-05 48.5 2.7 25 63-87 27-51 (362)
356 4fcw_A Chaperone protein CLPB; 83.6 0.86 3E-05 45.4 4.5 24 66-89 48-71 (311)
357 2wwf_A Thymidilate kinase, put 83.6 0.67 2.3E-05 43.3 3.5 25 64-88 9-33 (212)
358 1m7g_A Adenylylsulfate kinase; 83.4 0.75 2.6E-05 43.1 3.7 27 62-88 22-48 (211)
359 2cdn_A Adenylate kinase; phosp 83.4 0.82 2.8E-05 42.4 4.0 24 66-89 21-44 (201)
360 2z0h_A DTMP kinase, thymidylat 83.3 0.67 2.3E-05 42.6 3.3 22 67-88 2-23 (197)
361 3gd7_A Fusion complex of cysti 83.2 0.5 1.7E-05 49.1 2.5 26 62-87 44-69 (390)
362 1gtv_A TMK, thymidylate kinase 83.1 0.41 1.4E-05 44.8 1.8 23 67-89 2-24 (214)
363 1v43_A Sugar-binding transport 83.1 0.53 1.8E-05 48.5 2.7 25 63-87 35-59 (372)
364 3d31_A Sulfate/molybdate ABC t 83.1 0.44 1.5E-05 48.7 2.0 25 63-87 24-48 (348)
365 1qf9_A UMP/CMP kinase, protein 83.1 0.74 2.5E-05 42.1 3.5 24 66-89 7-30 (194)
366 1e6c_A Shikimate kinase; phosp 83.0 0.75 2.6E-05 41.3 3.4 24 66-89 3-26 (173)
367 2pjz_A Hypothetical protein ST 83.0 0.51 1.8E-05 46.1 2.4 24 62-86 28-51 (263)
368 1tq4_A IIGP1, interferon-induc 83.0 1 3.6E-05 47.0 4.9 25 63-87 67-91 (413)
369 3cf2_A TER ATPase, transitiona 82.9 1.1 3.7E-05 51.0 5.3 25 65-89 511-535 (806)
370 2vp4_A Deoxynucleoside kinase; 82.9 0.53 1.8E-05 44.9 2.4 23 64-86 19-41 (230)
371 1c4o_A DNA nucleotide excision 82.8 2.5 8.4E-05 47.3 8.2 58 58-120 20-78 (664)
372 1g29_1 MALK, maltose transport 82.8 0.54 1.8E-05 48.5 2.6 25 63-87 27-51 (372)
373 3qf7_A RAD50; ABC-ATPase, ATPa 82.8 0.71 2.4E-05 47.5 3.5 20 67-86 25-44 (365)
374 3tui_C Methionine import ATP-b 82.7 0.57 1.9E-05 48.0 2.7 26 62-87 51-76 (366)
375 1e4v_A Adenylate kinase; trans 82.6 0.77 2.6E-05 43.1 3.5 23 67-89 2-24 (214)
376 3cr8_A Sulfate adenylyltranfer 82.5 0.9 3.1E-05 49.5 4.3 58 32-89 328-393 (552)
377 3nwj_A ATSK2; P loop, shikimat 82.4 0.85 2.9E-05 44.2 3.7 25 65-89 48-72 (250)
378 2vli_A Antibiotic resistance p 82.4 0.69 2.4E-05 42.0 3.0 25 65-89 5-29 (183)
379 1via_A Shikimate kinase; struc 82.3 0.83 2.8E-05 41.2 3.5 23 67-89 6-28 (175)
380 2xb4_A Adenylate kinase; ATP-b 82.2 0.86 2.9E-05 43.2 3.6 23 67-89 2-24 (223)
381 3io5_A Recombination and repai 82.2 1 3.4E-05 45.1 4.1 42 64-106 28-70 (333)
382 2pbr_A DTMP kinase, thymidylat 82.2 0.79 2.7E-05 42.0 3.3 22 67-88 2-23 (195)
383 2iyv_A Shikimate kinase, SK; t 82.2 0.83 2.8E-05 41.6 3.4 24 66-89 3-26 (184)
384 1sq5_A Pantothenate kinase; P- 82.0 2 6.7E-05 43.0 6.4 26 63-88 78-103 (308)
385 1ak2_A Adenylate kinase isoenz 81.8 1 3.4E-05 43.0 4.0 25 65-89 16-40 (233)
386 1ny5_A Transcriptional regulat 81.8 3.7 0.00013 42.5 8.6 37 63-100 158-194 (387)
387 1ixz_A ATP-dependent metallopr 81.8 0.82 2.8E-05 44.2 3.4 24 66-89 50-73 (254)
388 3a4m_A L-seryl-tRNA(SEC) kinas 81.8 0.77 2.6E-05 44.7 3.2 24 65-88 4-27 (260)
389 1tue_A Replication protein E1; 81.8 0.77 2.6E-05 42.8 3.0 22 66-87 59-80 (212)
390 1jjv_A Dephospho-COA kinase; P 81.8 0.83 2.8E-05 42.5 3.3 20 67-86 4-23 (206)
391 2pt5_A Shikimate kinase, SK; a 81.8 0.87 3E-05 40.6 3.4 23 67-89 2-24 (168)
392 4tmk_A Protein (thymidylate ki 81.7 1.5 5.2E-05 41.2 5.1 25 64-88 2-26 (213)
393 1c9k_A COBU, adenosylcobinamid 81.6 1.1 3.8E-05 40.8 4.0 46 68-119 2-47 (180)
394 3be4_A Adenylate kinase; malar 81.6 1.1 3.6E-05 42.3 4.0 25 65-89 5-29 (217)
395 3d8b_A Fidgetin-like protein 1 81.4 1.4 4.9E-05 45.0 5.2 25 65-89 117-141 (357)
396 1xp8_A RECA protein, recombina 81.3 0.91 3.1E-05 46.7 3.7 42 62-104 71-112 (366)
397 4db1_A Myosin-7; S1DC, cardiac 81.3 2 6.9E-05 48.5 6.7 55 26-80 125-186 (783)
398 2if2_A Dephospho-COA kinase; a 81.3 0.86 2.9E-05 42.3 3.2 21 67-87 3-23 (204)
399 1oxx_K GLCV, glucose, ABC tran 81.3 0.45 1.5E-05 48.7 1.3 25 63-87 29-53 (353)
400 2vhj_A Ntpase P4, P4; non- hyd 81.2 0.5 1.7E-05 47.4 1.5 27 62-88 120-146 (331)
401 3uk6_A RUVB-like 2; hexameric 81.1 1.4 4.8E-05 45.1 5.1 24 66-89 71-94 (368)
402 2eyq_A TRCF, transcription-rep 81.0 2.1 7.3E-05 51.1 7.2 79 275-358 651-730 (1151)
403 4edh_A DTMP kinase, thymidylat 80.9 1.6 5.4E-05 41.1 4.9 40 64-104 5-44 (213)
404 1vht_A Dephospho-COA kinase; s 80.9 0.78 2.7E-05 43.1 2.8 22 65-86 4-25 (218)
405 1tf7_A KAIC; homohexamer, hexa 80.8 1 3.4E-05 48.9 4.0 41 61-102 277-317 (525)
406 3auy_A DNA double-strand break 80.8 0.82 2.8E-05 47.2 3.2 23 65-87 25-47 (371)
407 3qks_A DNA double-strand break 80.7 1 3.5E-05 42.0 3.5 23 65-87 23-45 (203)
408 1odf_A YGR205W, hypothetical 3 80.6 0.89 3E-05 45.1 3.2 23 65-87 31-53 (290)
409 3v9p_A DTMP kinase, thymidylat 80.4 0.89 3E-05 43.3 3.0 28 61-88 21-48 (227)
410 4hlc_A DTMP kinase, thymidylat 80.4 1.8 6.2E-05 40.4 5.1 37 65-103 2-38 (205)
411 2l8b_A Protein TRAI, DNA helic 80.2 6.5 0.00022 35.6 8.3 122 49-205 33-158 (189)
412 3cmw_A Protein RECA, recombina 80.1 1.2 4.2E-05 54.6 4.7 87 64-174 1430-1519(1706)
413 1svm_A Large T antigen; AAA+ f 80.0 0.95 3.2E-05 46.7 3.3 26 63-88 167-192 (377)
414 2r2a_A Uncharacterized protein 80.0 1.5 5.2E-05 40.7 4.4 23 67-89 7-29 (199)
415 3b5x_A Lipid A export ATP-bind 79.9 1 3.4E-05 49.7 3.6 27 62-88 366-392 (582)
416 3t15_A Ribulose bisphosphate c 79.9 1.1 3.7E-05 44.5 3.6 24 66-89 37-60 (293)
417 3lv8_A DTMP kinase, thymidylat 79.8 1.9 6.4E-05 41.3 5.1 26 64-89 26-51 (236)
418 1uf9_A TT1252 protein; P-loop, 79.7 1 3.6E-05 41.5 3.2 22 66-87 9-30 (203)
419 1w9i_A Myosin II heavy chain; 79.6 2.3 8E-05 47.8 6.5 55 27-81 127-188 (770)
420 4anj_A Unconventional myosin-V 79.4 2.4 8.2E-05 49.5 6.7 55 26-80 97-159 (1052)
421 1w7j_A Myosin VA; motor protei 79.3 2.5 8.6E-05 47.9 6.7 53 27-79 111-170 (795)
422 1iy2_A ATP-dependent metallopr 79.1 1.1 3.9E-05 43.9 3.4 24 66-89 74-97 (278)
423 3sop_A Neuronal-specific septi 79.1 1 3.6E-05 44.1 3.1 23 67-89 4-26 (270)
424 1kk8_A Myosin heavy chain, str 79.0 2.2 7.6E-05 48.6 6.1 53 27-79 124-183 (837)
425 2x8a_A Nuclear valosin-contain 79.0 1.2 4.1E-05 43.8 3.5 24 66-89 45-68 (274)
426 1lkx_A Myosin IE heavy chain; 78.9 2.2 7.5E-05 47.6 5.9 55 26-80 48-109 (697)
427 2qm8_A GTPase/ATPase; G protei 78.7 1.8 6.1E-05 44.0 4.8 32 57-88 43-78 (337)
428 2p5t_B PEZT; postsegregational 78.6 0.86 2.9E-05 44.1 2.3 25 65-89 32-56 (253)
429 3pxg_A Negative regulator of g 78.2 1.7 5.7E-05 46.4 4.6 33 56-88 190-224 (468)
430 2rcn_A Probable GTPase ENGC; Y 78.2 1.7 5.8E-05 44.4 4.4 26 63-88 213-238 (358)
431 4a82_A Cystic fibrosis transme 78.2 0.76 2.6E-05 50.6 2.0 24 63-86 365-388 (578)
432 2npi_A Protein CLP1; CLP1-PCF1 78.1 0.95 3.2E-05 48.1 2.6 31 58-88 131-161 (460)
433 2yv5_A YJEQ protein; hydrolase 78.0 2.1 7.1E-05 42.7 5.0 25 62-86 162-186 (302)
434 3r20_A Cytidylate kinase; stru 78.0 1.6 5.5E-05 41.7 3.9 26 64-89 8-33 (233)
435 3tmk_A Thymidylate kinase; pho 77.9 1.4 4.8E-05 41.5 3.5 26 64-89 4-29 (216)
436 1pui_A ENGB, probable GTP-bind 77.9 0.74 2.5E-05 42.8 1.5 23 63-85 24-46 (210)
437 3oiy_A Reverse gyrase helicase 77.8 2.5 8.7E-05 43.9 5.9 79 274-358 62-144 (414)
438 3hjn_A DTMP kinase, thymidylat 77.4 2.3 7.8E-05 39.4 4.8 36 68-104 3-38 (197)
439 1lw7_A Transcriptional regulat 77.1 1.2 4E-05 45.9 2.9 27 62-88 165-193 (365)
440 3qkt_A DNA double-strand break 77.0 1.3 4.6E-05 44.9 3.3 22 65-86 23-44 (339)
441 3b60_A Lipid A export ATP-bind 76.9 0.98 3.3E-05 49.7 2.4 25 63-87 367-391 (582)
442 2www_A Methylmalonic aciduria 76.4 2.1 7.1E-05 43.7 4.6 25 65-89 74-98 (349)
443 2v26_A Myosin VI; calmodulin-b 76.4 3.7 0.00013 46.5 6.9 53 27-79 94-154 (784)
444 2grj_A Dephospho-COA kinase; T 76.4 1.6 5.4E-05 40.3 3.3 23 66-88 13-35 (192)
445 1um8_A ATP-dependent CLP prote 76.3 1.6 5.4E-05 45.0 3.7 25 65-89 72-96 (376)
446 2dfs_A Myosin-5A; myosin-V, in 76.2 3.3 0.00011 48.8 6.7 53 27-79 111-170 (1080)
447 1ltq_A Polynucleotide kinase; 76.1 1.5 5.1E-05 43.5 3.4 22 66-87 3-24 (301)
448 1g8x_A Myosin II heavy chain f 76.0 3.2 0.00011 48.5 6.4 54 26-79 126-186 (1010)
449 3qf4_A ABC transporter, ATP-bi 76.0 0.93 3.2E-05 49.9 1.9 25 63-87 367-391 (587)
450 2c9o_A RUVB-like 1; hexameric 75.9 2.5 8.7E-05 44.8 5.3 24 66-89 64-87 (456)
451 3qf4_B Uncharacterized ABC tra 75.8 0.84 2.9E-05 50.4 1.5 26 62-87 378-403 (598)
452 2qag_B Septin-6, protein NEDD5 75.7 1.1 3.9E-05 46.8 2.3 27 61-87 36-64 (427)
453 2dyk_A GTP-binding protein; GT 75.6 1.8 6E-05 37.9 3.4 22 67-88 3-24 (161)
454 2iut_A DNA translocase FTSK; n 75.1 2.6 9.1E-05 45.6 5.1 41 64-104 213-255 (574)
455 1oix_A RAS-related protein RAB 75.1 1.6 5.5E-05 40.0 3.0 23 67-89 31-53 (191)
456 2f9l_A RAB11B, member RAS onco 75.0 1.6 5.6E-05 40.1 3.1 22 67-88 7-28 (199)
457 2ycu_A Non muscle myosin 2C, a 74.7 3.4 0.00012 48.2 6.3 54 26-79 100-160 (995)
458 1vec_A ATP-dependent RNA helic 74.4 10 0.00034 34.7 8.5 76 275-358 70-151 (206)
459 2r62_A Cell division protease 74.4 0.94 3.2E-05 44.1 1.3 25 65-89 44-68 (268)
460 1z2a_A RAS-related protein RAB 74.3 1.9 6.6E-05 37.9 3.3 22 67-88 7-28 (168)
461 2ce2_X GTPase HRAS; signaling 74.3 1.9 6.4E-05 37.7 3.2 22 67-88 5-26 (166)
462 1uj2_A Uridine-cytidine kinase 74.3 2.1 7.3E-05 41.2 3.8 24 66-89 23-46 (252)
463 1yqt_A RNAse L inhibitor; ATP- 74.3 1.4 4.9E-05 47.8 2.8 27 62-88 44-70 (538)
464 2ged_A SR-beta, signal recogni 74.2 1.9 6.7E-05 39.1 3.4 23 66-88 49-71 (193)
465 3ake_A Cytidylate kinase; CMP 73.7 2 6.8E-05 39.7 3.3 23 67-89 4-26 (208)
466 2yl4_A ATP-binding cassette SU 73.6 1.1 3.6E-05 49.6 1.5 25 63-87 368-392 (595)
467 1t6n_A Probable ATP-dependent 73.6 7.1 0.00024 36.3 7.3 76 276-358 82-163 (220)
468 2obl_A ESCN; ATPase, hydrolase 73.3 1.5 5.1E-05 44.7 2.5 28 62-89 68-95 (347)
469 1g8p_A Magnesium-chelatase 38 73.3 2.1 7.3E-05 43.2 3.7 26 64-89 44-69 (350)
470 2ocp_A DGK, deoxyguanosine kin 73.1 2.1 7E-05 41.0 3.3 25 65-89 2-26 (241)
471 1ky3_A GTP-binding protein YPT 73.0 2.2 7.4E-05 38.1 3.4 22 67-88 10-31 (182)
472 2wsm_A Hydrogenase expression/ 73.0 3.6 0.00012 38.3 5.1 26 64-89 29-54 (221)
473 1yrb_A ATP(GTP)binding protein 73.0 3.3 0.00011 39.9 4.9 33 66-100 15-47 (262)
474 1e69_A Chromosome segregation 72.9 1.7 5.7E-05 43.8 2.7 22 66-87 25-46 (322)
475 2wji_A Ferrous iron transport 72.8 2.2 7.6E-05 37.8 3.3 21 67-87 5-25 (165)
476 1z0j_A RAB-22, RAS-related pro 72.8 2.3 7.7E-05 37.5 3.4 23 67-89 8-30 (170)
477 1ek0_A Protein (GTP-binding pr 72.6 2.2 7.7E-05 37.5 3.3 23 67-89 5-27 (170)
478 1kao_A RAP2A; GTP-binding prot 72.6 2.3 7.9E-05 37.2 3.4 22 67-88 5-26 (167)
479 2f6r_A COA synthase, bifunctio 72.6 2 6.9E-05 42.2 3.2 21 66-86 76-96 (281)
480 1u8z_A RAS-related protein RAL 72.3 2.3 7.9E-05 37.2 3.3 22 67-88 6-27 (168)
481 1p5z_B DCK, deoxycytidine kina 72.2 1.6 5.6E-05 42.3 2.4 23 64-86 23-45 (263)
482 3fe2_A Probable ATP-dependent 72.2 6.4 0.00022 37.4 6.7 75 275-358 101-181 (242)
483 3zvl_A Bifunctional polynucleo 72.0 2.2 7.6E-05 44.7 3.5 25 64-88 257-281 (416)
484 1q3t_A Cytidylate kinase; nucl 72.0 2.7 9.4E-05 39.9 3.9 26 64-89 15-40 (236)
485 1g16_A RAS-related protein SEC 72.0 2.3 7.8E-05 37.5 3.2 22 67-88 5-26 (170)
486 1g41_A Heat shock protein HSLU 71.9 3.5 0.00012 43.4 4.9 25 65-89 50-74 (444)
487 2erx_A GTP-binding protein DI- 71.7 2.5 8.5E-05 37.3 3.4 21 67-87 5-25 (172)
488 1svi_A GTP-binding protein YSX 71.6 2.1 7.3E-05 38.9 3.0 23 65-87 23-45 (195)
489 1m8p_A Sulfate adenylyltransfe 71.6 3.5 0.00012 45.1 5.0 58 31-88 354-419 (573)
490 1wms_A RAB-9, RAB9, RAS-relate 71.5 2.5 8.5E-05 37.6 3.4 22 67-88 9-30 (177)
491 2d7d_A Uvrabc system protein B 71.5 7.6 0.00026 43.2 8.0 58 58-120 24-82 (661)
492 2dpy_A FLII, flagellum-specifi 71.4 1.9 6.4E-05 45.5 2.8 28 62-89 154-181 (438)
493 3ice_A Transcription terminati 71.4 2.7 9.2E-05 43.2 3.8 26 62-87 171-196 (422)
494 3ld9_A DTMP kinase, thymidylat 71.3 2.5 8.7E-05 40.0 3.4 25 64-88 20-44 (223)
495 2gj8_A MNME, tRNA modification 71.1 2.3 7.8E-05 38.1 3.0 23 65-87 4-26 (172)
496 4akg_A Glutathione S-transfera 71.1 3.4 0.00012 53.3 5.4 64 46-109 901-968 (2695)
497 1z08_A RAS-related protein RAB 71.0 2.6 9E-05 37.1 3.4 22 67-88 8-29 (170)
498 1c1y_A RAS-related protein RAP 71.0 2.6 8.8E-05 37.0 3.3 21 67-87 5-25 (167)
499 3j16_B RLI1P; ribosome recycli 71.0 1.9 6.5E-05 47.5 2.8 27 62-88 100-126 (608)
500 3pqc_A Probable GTP-binding pr 70.9 2.3 7.7E-05 38.6 3.0 23 66-88 24-46 (195)
No 1
>2xau_A PRE-mRNA-splicing factor ATP-dependent RNA helica; hydrolase, ribosome biogenesis, ATPase, ATP-binding, OB-fold; HET: ADP; 1.90A {Saccharomyces cerevisiae} PDB: 3kx2_B*
Probab=100.00 E-value=6.1e-97 Score=848.49 Aligned_cols=602 Identities=44% Similarity=0.726 Sum_probs=544.6
Q ss_pred ccCCCCCCCccchHhHHHHhcCCCcHHHHHHHHHHHhcCCEEEEEcCCCCcHHHHHHHHHHhccccCC-CeEEEEeCchH
Q 006122 27 SSLSSASSIGYGYASIEKQRQRLPVYKYRTAILYLVETHATTIIVGETGSGKTTQIPQYLKEAGWADG-GRVIACTQPRR 105 (660)
Q Consensus 27 ~~~~~~~~~~~~~~~~~~~~~~lPi~~~~~~i~~~l~~~~~vii~apTGsGKT~~ip~~l~~~~~~~~-~~~i~v~p~r~ 105 (660)
.+|.+++++.... ++.+.+..+|++.++++|+.++.++++++++||||||||+++|+++.......+ +..+++++|++
T Consensus 72 ~~f~~~~l~~~~~-~~l~~r~~lP~~~q~~~i~~~l~~~~~vii~gpTGSGKTtllp~ll~~~~~~~~~g~~ilvl~P~r 150 (773)
T 2xau_A 72 NPFTGREFTPKYV-DILKIRRELPVHAQRDEFLKLYQNNQIMVFVGETGSGKTTQIPQFVLFDEMPHLENTQVACTQPRR 150 (773)
T ss_dssp CTTTCSBCCHHHH-HHHHHHTTSGGGGGHHHHHHHHHHCSEEEEECCTTSSHHHHHHHHHHHHHCGGGGTCEEEEEESCH
T ss_pred CCccccCCCHHHH-HHHHHhhcCChHHHHHHHHHHHhCCCeEEEECCCCCCHHHHHHHHHHHhccccCCCceEEecCchH
Confidence 4699999988655 555667799999999999999999999999999999999999999877544331 33344555566
Q ss_pred HHHHHHHHHHHHHhCCeeeeEEeeeeeccccCCCCCceEEEechHHHHHHHhcCCCCCCCcEEEEeCCCcCCcChhHHHH
Q 006122 106 LAVQAVASRVAEEMGVKVGEEVGYTIRFEDFTNKDLTAIKFLTDGVLLREMMDDPLLTKYSVIMVDEAHERSISTDILLG 185 (660)
Q Consensus 106 la~~~~~~~~~~~~~~~~~~~vg~~~~~~~~~~~~~~~I~v~T~~~ll~~l~~~~~l~~~~~iIiDE~Her~~~~d~ll~ 185 (660)
.++.+++++++++++..++..+||.++++..... .++|+++|+|++++.+..+..+.++++|||||+|+|+++.+.++.
T Consensus 151 ~La~q~~~~l~~~~~~~v~~~vG~~i~~~~~~~~-~~~I~v~T~G~l~r~l~~~~~l~~~~~lIlDEah~R~ld~d~~~~ 229 (773)
T 2xau_A 151 VAAMSVAQRVAEEMDVKLGEEVGYSIRFENKTSN-KTILKYMTDGMLLREAMEDHDLSRYSCIILDEAHERTLATDILMG 229 (773)
T ss_dssp HHHHHHHHHHHHHTTCCBTTTEEEEETTEEECCT-TCSEEEEEHHHHHHHHHHSTTCTTEEEEEECSGGGCCHHHHHHHH
T ss_pred HHHHHHHHHHHHHhCCchhheecceeccccccCC-CCCEEEECHHHHHHHHhhCccccCCCEEEecCccccccchHHHHH
Confidence 6667788899999999999999999888877666 899999999999999988888999999999999999999999999
Q ss_pred HHHHHHHhcCCceEEEeecccchHHHHHHhhcCCCCCCCcccccCCCCCCeEEEECCccccceEEecCCCchhHHHHHHH
Q 006122 186 LLKKIQRCRSDLRLIISSATIEAKSMSAFFHARKGRRGLEGVELVPRLEPAILSVEGRGFNVQIHYVEEPVSDYVQAAVS 265 (660)
Q Consensus 186 ~l~~~~~~~~~~kii~~SAT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~ 265 (660)
+++.+...+++.++|+||||++.+.+++||+..+ ++.++++.+|++++|...+..++....+.
T Consensus 230 ~l~~l~~~~~~~~iIl~SAT~~~~~l~~~~~~~~-----------------vi~v~gr~~pv~~~~~~~~~~~~~~~~l~ 292 (773)
T 2xau_A 230 LLKQVVKRRPDLKIIIMSATLDAEKFQRYFNDAP-----------------LLAVPGRTYPVELYYTPEFQRDYLDSAIR 292 (773)
T ss_dssp HHHHHHHHCTTCEEEEEESCSCCHHHHHHTTSCC-----------------EEECCCCCCCEEEECCSSCCSCHHHHHHH
T ss_pred HHHHHHHhCCCceEEEEeccccHHHHHHHhcCCC-----------------cccccCcccceEEEEecCCchhHHHHHHH
Confidence 9999998888999999999999999999998766 88999999999999999888888888888
Q ss_pred HHHHHHhcCCCCcEEEEcCCHHHHHHHHHHHHHHhhhc--cCCCCCeEEEEccCCCCHHHHhhhcCCCC-----CCCcEE
Q 006122 266 TVLLIHDKEPPGDILVFLTGQDDIDATIQLLTEEARTS--KKNSSGLIILPLYSGLSRAEQEQVFSPTP-----RGKRKV 338 (660)
Q Consensus 266 ~~~~~~~~~~~~~iLVF~~~~~~i~~l~~~L~~~~~~~--~~~~~~~~v~~lh~~l~~~~r~~v~~~f~-----~g~~~v 338 (660)
.+..++....++++||||+++++++.+++.|.+..... .....++.+.++||+|++++|.++++.|+ +|.++|
T Consensus 293 ~l~~~~~~~~~g~iLVF~~~~~~i~~l~~~L~~~~~~l~~~~~~~~~~v~~lhg~l~~~eR~~v~~~f~~~~~~~g~~kV 372 (773)
T 2xau_A 293 TVLQIHATEEAGDILLFLTGEDEIEDAVRKISLEGDQLVREEGCGPLSVYPLYGSLPPHQQQRIFEPAPESHNGRPGRKV 372 (773)
T ss_dssp HHHHHHHHSCSCEEEEECSCHHHHHHHHHHHHHHHHHHHHHHCCCCEEEEEECTTCCHHHHGGGGSCCCCCSSSSCCEEE
T ss_pred HHHHHHHhcCCCCEEEECCCHHHHHHHHHHHHHHHHhhcccccCCCeEEEEeCCCCCHHHHHHHHhhcccccCCCCceEE
Confidence 88888887788999999999999999999998744322 12234789999999999999999999999 999999
Q ss_pred EEeCCCcccccCCCCeEEEEeCCCccceeecCCCCcccceeeecCHHhHHHhhcccCCCCCcEEEEccChHHhhhhCCCC
Q 006122 339 VISTNIAETSLTLEGIVYVVDSGFSKQRFYNPISDIENLVVAPISKASARQRAGRAGRVRPGKCYRLYTEEYFVKEIPAE 418 (660)
Q Consensus 339 lvaT~i~e~Gidip~v~~VId~g~~k~~~~~~~~~~~~l~~~~~s~~~~~QR~GRaGR~~~G~~~~l~~~~~~~~~~~~~ 418 (660)
|||||++|+|||||+|++|||+|+.|.+.||+..+++.+.+.|+|.++|.||+|||||.++|.||+||+++++...+.++
T Consensus 373 lVAT~iae~GidIp~v~~VId~g~~k~~~yd~~~g~~~L~~~p~S~~s~~QR~GRaGR~~~G~~~~l~~~~~~~~~l~~~ 452 (773)
T 2xau_A 373 VISTNIAETSLTIDGIVYVVDPGFSKQKVYNPRIRVESLLVSPISKASAQQRAGRAGRTRPGKCFRLYTEEAFQKELIEQ 452 (773)
T ss_dssp EEECTHHHHTCCCTTEEEEEECSEEEEEEEETTTTEEEEEEEECCHHHHHHHHHGGGSSSSEEEEESSCHHHHHHTSCSS
T ss_pred EEeCcHHHhCcCcCCeEEEEeCCCccceeeccccCccccccccCCHHHHHhhccccCCCCCCEEEEEecHHHhccccccc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999995559999
Q ss_pred CCCccccccchhHHHHHHHcCCCCccCCCCCCCCCHHHHHHHHHHHHHCCCCCCCCCcchHHHHHhccCCCChhhhHHHH
Q 006122 419 GIPEMQRSNLVSCVIQLKALGIDNILGFDWPASPPPEAMIRALEVLYSLGVLDDDAKLTSPTGFQVAEIPLEPMISKMIL 498 (660)
Q Consensus 419 ~~pei~~~~l~~~~l~l~~~~~~~~~~~~~~~~p~~~~~~~al~~L~~lgald~~~~lT~~lG~~~~~lpl~p~~~~~l~ 498 (660)
..|||++.+|.+++|+++.+|++++..|+|++||+.+.+..|++.|..+||||++|++| ++|+.|+.+|++|++||||+
T Consensus 453 ~~pEi~r~~L~~~~L~l~~~gi~~~~~f~~~~~p~~~~i~~a~~~L~~lgald~~~~lT-~lG~~~a~~pl~p~~~~~l~ 531 (773)
T 2xau_A 453 SYPEILRSNLSSTVLELKKLGIDDLVHFDFMDPPAPETMMRALEELNYLACLDDEGNLT-PLGRLASQFPLDPMLAVMLI 531 (773)
T ss_dssp CCCGGGGSCCHHHHHHHHHTTCCCGGGCCCSSCCCHHHHHHHHHHHHHTTSBCTTSCBC-HHHHHHTTSSSCHHHHHHHH
T ss_pred CCCccccCcHHHHHHHHHHcCCCChhhccccCCCcHHHHHHHHHHHHHcCCcccCCCcC-hhhhhhccccCCHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999 79999999999999999999
Q ss_pred hhcccCchhHHHHHHhhcccCcccccCcchHHHHHHHHHhhcCCCCcHHHHHHHHHHHHhcC---cc-hhHHhhccCCHH
Q 006122 499 SSNELGCSEEIITISAVLSIQSIWVSGRGAQKELDEAKLRFAAAEGDHVTFLNIYKGFLQSC---KS-SHWCHKNFINYH 574 (660)
Q Consensus 499 ~~~~~~c~~~~~~i~a~ls~~~~f~~~~~~~~~~~~~~~~~~~~~~D~~~~l~~~~~~~~~~---~~-~~wc~~~~l~~~ 574 (660)
.+..++|.+++++|+|+|+++++|..|.+.+++++.++++|....|||++++|+|++|.+.. .. .+||++|||+++
T Consensus 532 ~~~~~~c~~~~l~i~a~ls~~~~f~~~~~~~~~~~~~~~~f~~~~~D~~~~l~~~~~~~~~~~~~~~~~~~c~~~~l~~~ 611 (773)
T 2xau_A 532 GSFEFQCSQEILTIVAMLSVPNVFIRPTKDKKRADDAKNIFAHPDGDHITLLNVYHAFKSDEAYEYGIHKWCRDHYLNYR 611 (773)
T ss_dssp HGGGGTCHHHHHHHHHHHTSCCCBCCCTTCHHHHHHHHHTTCCTTBHHHHHHHHHHHHTSHHHHHHCHHHHHHHTTBCHH
T ss_pred hhcccCchhHHHHHHHhcccCCcccCChHHHHHHHHHHHhccCCCCcHHHHHHHHHHHHHhccccchHHHHHHHhCCCHH
Confidence 99999999999999999999999999999999999999999999999999999999997654 44 789999999999
Q ss_pred HHHHHHHHHHHHHHHHHHcCCcccCCC----CChHHHHHHHHHhhhhhhhccCCCCC-cccccccCCCCcEEEccCCC--
Q 006122 575 AMKKVIEIREQLRRIAQRIGIVMKSCE----SDMQVSLLTLLLVCLERISTLYDFPK-LMGTCMPSAGCSFVYHVTCS-- 647 (660)
Q Consensus 575 ~l~~~~~ir~ql~~~l~~~~l~~~~~~----~~~~~i~~al~~g~~~~ia~~~~~~~-~~~~~~~~~~~~~~~hp~~~-- 647 (660)
+|++|.++|.||.++|++.+++..+++ .+++.|++||++||++|+|+.....+ |.+. ..|..|++||+|+
T Consensus 612 ~l~~~~~~~~ql~~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~g~~~~~a~~~~~~~~y~~~---~~~~~~~ihp~s~l~ 688 (773)
T 2xau_A 612 SLSAADNIRSQLERLMNRYNLELNTTDYESPKYFDNIRKALASGFFMQVAKKRSGAKGYITV---KDNQDVLIHPSTVLG 688 (773)
T ss_dssp HHHHHHHHHHHHHHHHHHTTCCCCCCCTTSTTHHHHHHHHHHHHHTTSEEEECCC--CEEET---TTCCEEEECTTCCCC
T ss_pred HHHHHHHHHHHHHHHHHhcCCCcCCCCCCchhhHHHHHHHHHHhChHhheeeccCCCcceEe---eCCCEEEECCCcccC
Confidence 999999999999999999999876543 34688999999999999999885544 5443 5688999999997
Q ss_pred ----CcEE
Q 006122 648 ----PVLC 651 (660)
Q Consensus 648 ----~~~~ 651 (660)
|++|
T Consensus 689 ~~~~~~v~ 696 (773)
T 2xau_A 689 HDAEWVIY 696 (773)
T ss_dssp TTCSEEEE
T ss_pred CCCCEEEE
Confidence 7777
No 2
>2va8_A SSO2462, SKI2-type helicase; hydrolase, DNA repair, ATP-bindin nucleotide-binding; 2.30A {Sulfolobus solfataricus}
Probab=100.00 E-value=6.6e-55 Score=503.16 Aligned_cols=554 Identities=16% Similarity=0.128 Sum_probs=379.7
Q ss_pred cCCCCCCCccchHhHHHHhcCCCcHHHHHHHHHH-HhcCCEEEEEcCCCCcHHHHHHHHHHhccccCCCeEEEEeCchHH
Q 006122 28 SLSSASSIGYGYASIEKQRQRLPVYKYRTAILYL-VETHATTIIVGETGSGKTTQIPQYLKEAGWADGGRVIACTQPRRL 106 (660)
Q Consensus 28 ~~~~~~~~~~~~~~~~~~~~~lPi~~~~~~i~~~-l~~~~~vii~apTGsGKT~~ip~~l~~~~~~~~~~~i~v~p~r~l 106 (660)
+|.+++++......+ +...--.++++|.+++.. +.++++++++||||||||+++++.+++.....++++++++|.|+|
T Consensus 9 ~~~~l~l~~~~~~~l-~~~g~~~l~~~Q~~~i~~~~~~~~~~lv~apTGsGKT~~~~l~il~~~~~~~~~il~i~P~r~L 87 (715)
T 2va8_A 9 PIEDLKLPSNVIEII-KKRGIKKLNPPQTEAVKKGLLEGNRLLLTSPTGSGKTLIAEMGIISFLLKNGGKAIYVTPLRAL 87 (715)
T ss_dssp BGGGSSSCHHHHHHH-HTTSCCBCCHHHHHHHHTTTTTTCCEEEECCTTSCHHHHHHHHHHHHHHHSCSEEEEECSCHHH
T ss_pred cHHHcCCCHHHHHHH-HhCCCCCCCHHHHHHHHHHhcCCCcEEEEcCCCCcHHHHHHHHHHHHHHHCCCeEEEEeCcHHH
Confidence 588999887665444 333333678888888888 788999999999999999999988876644356777888887777
Q ss_pred HHHHHHHHHH--HHhCCeeeeEEeeeeeccccCCCCCceEEEechHHHHHHHhcCCC-CCCCcEEEEeCCCcCCcChhHH
Q 006122 107 AVQAVASRVA--EEMGVKVGEEVGYTIRFEDFTNKDLTAIKFLTDGVLLREMMDDPL-LTKYSVIMVDEAHERSISTDIL 183 (660)
Q Consensus 107 a~~~~~~~~~--~~~~~~~~~~vg~~~~~~~~~~~~~~~I~v~T~~~ll~~l~~~~~-l~~~~~iIiDE~Her~~~~d~l 183 (660)
+.+. ++++. ..+|..++..+|+..+.+... . .++|+|+|||++.+.+..++. +.++++|||||+|+.+ +.+.
T Consensus 88 a~q~-~~~~~~~~~~g~~v~~~~G~~~~~~~~~-~-~~~Iiv~Tpe~l~~~~~~~~~~l~~~~~vIiDE~H~l~-~~~~- 162 (715)
T 2va8_A 88 TNEK-YLTFKDWELIGFKVAMTSGDYDTDDAWL-K-NYDIIITTYEKLDSLWRHRPEWLNEVNYFVLDELHYLN-DPER- 162 (715)
T ss_dssp HHHH-HHHHGGGGGGTCCEEECCSCSSSCCGGG-G-GCSEEEECHHHHHHHHHHCCGGGGGEEEEEECSGGGGG-CTTT-
T ss_pred HHHH-HHHHHHhhcCCCEEEEEeCCCCCchhhc-C-CCCEEEEcHHHHHHHHhCChhHhhccCEEEEechhhcC-Cccc-
Confidence 7764 44442 345888998899876665433 3 689999999999999888776 8999999999999754 2111
Q ss_pred HHHHHHHHHhcCCceEEEeeccc-chHHHHHHhhcCCCCCCCcccccCCCCCCeEEEECCccccceEE------------
Q 006122 184 LGLLKKIQRCRSDLRLIISSATI-EAKSMSAFFHARKGRRGLEGVELVPRLEPAILSVEGRGFNVQIH------------ 250 (660)
Q Consensus 184 l~~l~~~~~~~~~~kii~~SAT~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~------------ 250 (660)
...++.+....+++|+|+||||+ +.+.+++|++.. .+..+++.+|++..
T Consensus 163 ~~~l~~i~~~~~~~~ii~lSATl~n~~~~~~~l~~~------------------~~~~~~r~~~l~~~~~~~~~~~~~~~ 224 (715)
T 2va8_A 163 GPVVESVTIRAKRRNLLALSATISNYKQIAKWLGAE------------------PVATNWRPVPLIEGVIYPERKKKEYN 224 (715)
T ss_dssp HHHHHHHHHHHHTSEEEEEESCCTTHHHHHHHHTCE------------------EEECCCCSSCEEEEEEEECSSTTEEE
T ss_pred chHHHHHHHhcccCcEEEEcCCCCCHHHHHHHhCCC------------------ccCCCCCCCCceEEEEecCCccccee
Confidence 22333333323389999999999 589999999743 33344444444322
Q ss_pred --ecCCCchhH--HHHHHHHHHHHHhcCCCCcEEEEcCCHHHHHHHHHHHHHHhhh--cc--------------CC----
Q 006122 251 --YVEEPVSDY--VQAAVSTVLLIHDKEPPGDILVFLTGQDDIDATIQLLTEEART--SK--------------KN---- 306 (660)
Q Consensus 251 --~~~~~~~~~--~~~~~~~~~~~~~~~~~~~iLVF~~~~~~i~~l~~~L~~~~~~--~~--------------~~---- 306 (660)
|........ .......+...+ ..++++||||+++++++.+++.|.+.... .. ..
T Consensus 225 ~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~LVF~~s~~~~~~~a~~L~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~ 302 (715)
T 2va8_A 225 VIFKDNTTKKVHGDDAIIAYTLDSL--SKNGQVLVFRNSRKMAESTALKIANYMNFVSLDENALSEILKQLDDIEEGGSD 302 (715)
T ss_dssp EEETTSCEEEEESSSHHHHHHHHHH--TTTCCEEEECSSHHHHHHHHHHHHHTTTSSCCCHHHHHHHHHHHHTCCSSCHH
T ss_pred eecCcchhhhcccchHHHHHHHHHH--hcCCCEEEEECCHHHHHHHHHHHHHHHhhccCChHHHHHHHHHHHHhhhcccc
Confidence 222111100 122333444433 35689999999999999999999875321 00 00
Q ss_pred -------CCCeEEEEccCCCCHHHHhhhcCCCCCCCcEEEEeCCCcccccCCCCeEEEEeCCCccceeecCCCCccccee
Q 006122 307 -------SSGLIILPLYSGLSRAEQEQVFSPTPRGKRKVVISTNIAETSLTLEGIVYVVDSGFSKQRFYNPISDIENLVV 379 (660)
Q Consensus 307 -------~~~~~v~~lh~~l~~~~r~~v~~~f~~g~~~vlvaT~i~e~Gidip~v~~VId~g~~k~~~~~~~~~~~~l~~ 379 (660)
.....+.+|||+|+.++|..+++.|++|.++|||||+++++|||+|++++||++ ...||+..+.. .
T Consensus 303 ~~~~l~~~~~~~v~~~h~~l~~~~r~~v~~~f~~g~~~vlvaT~~l~~Gidip~~~~VI~~----~~~~d~~~~~~---~ 375 (715)
T 2va8_A 303 EKELLKSLISKGVAYHHAGLSKALRDLIEEGFRQRKIKVIVATPTLAAGVNLPARTVIIGD----IYRFNKKIAGY---Y 375 (715)
T ss_dssp HHHHHHHHHTTTEEEECTTSCHHHHHHHHHHHHTTCSCEEEECGGGGGSSCCCBSEEEECC----C--------------
T ss_pred ccHHHHHHHhcCEEEECCCCCHHHHHHHHHHHHcCCCeEEEEChHHhcccCCCceEEEEeC----CeeccccCCCC---C
Confidence 001348999999999999999999999999999999999999999999999985 34577554332 4
Q ss_pred eecCHHhHHHhhcccCCCC---CcEEEEccChHH-hhhhCC--CCCCCccccccchh------HHHHHHHcCCC----Cc
Q 006122 380 APISKASARQRAGRAGRVR---PGKCYRLYTEEY-FVKEIP--AEGIPEMQRSNLVS------CVIQLKALGID----NI 443 (660)
Q Consensus 380 ~~~s~~~~~QR~GRaGR~~---~G~~~~l~~~~~-~~~~~~--~~~~pei~~~~l~~------~~l~l~~~~~~----~~ 443 (660)
.|.|.++|.||+|||||.+ +|.||+++++.. +...+. -...||+.++++.. .++.+...|.- ++
T Consensus 376 ~~~s~~~~~Qr~GRaGR~g~~~~G~~~~l~~~~~~~~~~~~~~l~~~~e~~~s~l~~~~~l~~~~l~~~~~g~~~~~~~~ 455 (715)
T 2va8_A 376 DEIPIMEYKQMSGRAGRPGFDQIGESIVVVRDKEDVDRVFKKYVLSDVEPIESKLGSERAFYTFLLGILSAEGNLSEKQL 455 (715)
T ss_dssp ---CHHHHHHHHTTBCCTTTCSCEEEEEECSCGGGHHHHHHHTTSSCCCCCCCSCCSHHHHHHHHHHHHHHHCSEEHHHH
T ss_pred CcCCHHHHHHHhhhcCCCCCCCCceEEEEeCCchHHHHHHHHHHcCCCCCceecCCchhHHHHHHHHHHhccccCCHHHH
Confidence 5999999999999999985 899999998665 222111 13568888887765 67777777632 22
Q ss_pred c---CCCCCC-CCCHHHHHHHHHHHHHCCCCCCCC---CcchHHHHHhccCCCChhhhHHHHhhccc---CchhHHHHHH
Q 006122 444 L---GFDWPA-SPPPEAMIRALEVLYSLGVLDDDA---KLTSPTGFQVAEIPLEPMISKMILSSNEL---GCSEEIITIS 513 (660)
Q Consensus 444 ~---~~~~~~-~p~~~~~~~al~~L~~lgald~~~---~lT~~lG~~~~~lpl~p~~~~~l~~~~~~---~c~~~~~~i~ 513 (660)
. ...|+. +|+...++.|++.|..+|+|+.++ .+| ++|+.|+.+|++|.++++++.+... .|..+++.|+
T Consensus 456 ~~~l~~~~~~~~~~~~~~~~al~~L~~~g~i~~~~~~~~~t-~lG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~i 534 (715)
T 2va8_A 456 ENFAYESLLAKQLVDVYFDRAIRWLLEHSFIKEEGNTFALT-NFGKRVADLYINPFTADIIRKGLEGHKASCELAYLHLL 534 (715)
T ss_dssp HHHHTTSSSCHHHHHHHHHHHHHHHHHTTSEEECSSEEEEC-HHHHHHHHHTCCHHHHHHHHHHHHHSCCCCHHHHHHHH
T ss_pred HHHHHhhHHHhhcchHHHHHHHHHHHHCcCEeecCCeEeeC-hHHHHHHHHcCCHhHHHHHHHHhhhccCCCHHHHHHHh
Confidence 2 224544 455667999999999999998764 789 7999999999999999999999887 7999999998
Q ss_pred hhccc-CcccccCcchHHHHHHHHHh-----hcC-CCC--------cHHHHHHHHHHHHhcCcchhHHhhccCCHHHHHH
Q 006122 514 AVLSI-QSIWVSGRGAQKELDEAKLR-----FAA-AEG--------DHVTFLNIYKGFLQSCKSSHWCHKNFINYHAMKK 578 (660)
Q Consensus 514 a~ls~-~~~f~~~~~~~~~~~~~~~~-----~~~-~~~--------D~~~~l~~~~~~~~~~~~~~wc~~~~l~~~~l~~ 578 (660)
|+.+. ++++.++.+... ......+ +.. +-. .|+...-+.+.|.+......+|.++++...-+..
T Consensus 535 ~~~~e~~~~~~r~~e~~~-l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~ll~~~~~~~~~~~i~~~y~~~~gdl~~ 613 (715)
T 2va8_A 535 AFTPDGPLVSVGRNEEEE-LIELLEDLDCELLIEEPYEEDEYSLYINALKVALIMKDWMDEVDEDTILSKYNIGSGDLRN 613 (715)
T ss_dssp HHSTTSCCCCCCHHHHHH-HHHHHTTCSSCCSSCCCSSHHHHHHHHHHHHHHHHHHHHHTTCCHHHHHHHHTCCHHHHHH
T ss_pred hcCcccccCccChHHHHH-HHHHHHhcchhhcccccccccchhhhHHHHHHHHHHHHHHcCCCHHHHHHHHCCChhhHHH
Confidence 88775 577777654322 2222111 100 001 3555666778888877777899999887777666
Q ss_pred HHH----HHHHHHHHHHHcCCcccCCCCChHHHHHHHHHhhhhh
Q 006122 579 VIE----IREQLRRIAQRIGIVMKSCESDMQVSLLTLLLVCLER 618 (660)
Q Consensus 579 ~~~----ir~ql~~~l~~~~l~~~~~~~~~~~i~~al~~g~~~~ 618 (660)
+.+ +-..+.+++...|..... .....+.+.|-.|..+.
T Consensus 614 l~~~a~~l~~a~~~i~~~~~~~~~~--~~l~~l~~rl~~gv~~e 655 (715)
T 2va8_A 614 MVETMDWLTYSAYHLSRELKLNEHA--DKLRILNLRVRDGIKEE 655 (715)
T ss_dssp HHHHHHHHHHHHHHHHHHTTCHHHH--HHHHHHHHHHHHTCCGG
T ss_pred HHHHHHHHHHHHHHHHHHhCcHHHH--HHHHHHHHHHHcCCChh
Confidence 544 444444455555532100 01223555555555433
No 3
>2p6r_A Afuhel308 helicase; protein-DNA complex, SF2 helicase, archaeal helicase, DNA repair,, DNA binding protein/DNA complex; 3.00A {Archaeoglobus fulgidus} SCOP: a.4.5.43 a.289.1.2 c.37.1.19 c.37.1.19 PDB: 2p6u_A
Probab=100.00 E-value=6.1e-54 Score=493.51 Aligned_cols=525 Identities=17% Similarity=0.141 Sum_probs=381.9
Q ss_pred CcHHHHHHHHHHHhcCCEEEEEcCCCCcHHHHHHHHHHhccccCCCeEEEEeCchHHHHHHHHHHHH--HHhCCeeeeEE
Q 006122 50 PVYKYRTAILYLVETHATTIIVGETGSGKTTQIPQYLKEAGWADGGRVIACTQPRRLAVQAVASRVA--EEMGVKVGEEV 127 (660)
Q Consensus 50 Pi~~~~~~i~~~l~~~~~vii~apTGsGKT~~ip~~l~~~~~~~~~~~i~v~p~r~la~~~~~~~~~--~~~~~~~~~~v 127 (660)
..+++|.++++++.++++++++||||||||+++++.+++... .++++++++|.|+|+.+...+ +. ...|..++..+
T Consensus 25 ~l~~~Q~~~i~~i~~~~~~lv~apTGsGKT~~~~l~il~~~~-~~~~~l~i~P~r~La~q~~~~-~~~~~~~g~~v~~~~ 102 (702)
T 2p6r_A 25 ELFPPQAEAVEKVFSGKNLLLAMPTAAGKTLLAEMAMVREAI-KGGKSLYVVPLRALAGEKYES-FKKWEKIGLRIGIST 102 (702)
T ss_dssp CCCCCCHHHHHHHTTCSCEEEECSSHHHHHHHHHHHHHHHHH-TTCCEEEEESSHHHHHHHHHH-HTTTTTTTCCEEEEC
T ss_pred CCCHHHHHHHHHHhCCCcEEEEcCCccHHHHHHHHHHHHHHH-hCCcEEEEeCcHHHHHHHHHH-HHHHHhcCCEEEEEe
Confidence 567889999999999999999999999999988888776532 456788888888887765443 32 23578889999
Q ss_pred eeeeeccccCCCCCceEEEechHHHHHHHhcCCC-CCCCcEEEEeCCCcCCc--ChhHHHHHHHHHHHhcCCceEEEeec
Q 006122 128 GYTIRFEDFTNKDLTAIKFLTDGVLLREMMDDPL-LTKYSVIMVDEAHERSI--STDILLGLLKKIQRCRSDLRLIISSA 204 (660)
Q Consensus 128 g~~~~~~~~~~~~~~~I~v~T~~~ll~~l~~~~~-l~~~~~iIiDE~Her~~--~~d~ll~~l~~~~~~~~~~kii~~SA 204 (660)
|+..+.+... . .++|+|+|||++.+.+..++. +.++++|||||+|+..- ....+..++..+...++++|+|+|||
T Consensus 103 G~~~~~~~~~-~-~~~Iiv~Tpe~l~~~l~~~~~~l~~~~~vIiDE~H~l~~~~r~~~~~~ll~~l~~~~~~~~ii~lSA 180 (702)
T 2p6r_A 103 GDYESRDEHL-G-DCDIIVTTSEKADSLIRNRASWIKAVSCLVVDEIHLLDSEKRGATLEILVTKMRRMNKALRVIGLSA 180 (702)
T ss_dssp SSCBCCSSCS-T-TCSEEEEEHHHHHHHHHTTCSGGGGCCEEEETTGGGGGCTTTHHHHHHHHHHHHHHCTTCEEEEEEC
T ss_pred CCCCcchhhc-c-CCCEEEECHHHHHHHHHcChhHHhhcCEEEEeeeeecCCCCcccHHHHHHHHHHhcCcCceEEEECC
Confidence 9776655433 3 699999999999999988776 89999999999996321 22233444444555678899999999
Q ss_pred cc-chHHHHHHhhcCCCCCCCcccccCCCCCCeEEEECCccccceEEecCCCchhHHH---------HHHHHHHHHHhcC
Q 006122 205 TI-EAKSMSAFFHARKGRRGLEGVELVPRLEPAILSVEGRGFNVQIHYVEEPVSDYVQ---------AAVSTVLLIHDKE 274 (660)
Q Consensus 205 T~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~---------~~~~~~~~~~~~~ 274 (660)
|+ +.+.+++|++.. .+..+++.+|++..+.......+.+ .....+.... .
T Consensus 181 Tl~n~~~~~~~l~~~------------------~~~~~~r~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~ 240 (702)
T 2p6r_A 181 TAPNVTEIAEWLDAD------------------YYVSDWRPVPLVEGVLCEGTLELFDGAFSTSRRVKFEELVEECV--A 240 (702)
T ss_dssp CCTTHHHHHHHTTCE------------------EEECCCCSSCEEEEEECSSEEEEEETTEEEEEECCHHHHHHHHH--H
T ss_pred CcCCHHHHHHHhCCC------------------cccCCCCCccceEEEeeCCeeeccCcchhhhhhhhHHHHHHHHH--h
Confidence 99 589999999742 4555666666655433221100000 0222233333 2
Q ss_pred CCCcEEEEcCCHHHHHHHHHHHHHHhhhccCCC----------C-----------CeEEEEccCCCCHHHHhhhcCCCCC
Q 006122 275 PPGDILVFLTGQDDIDATIQLLTEEARTSKKNS----------S-----------GLIILPLYSGLSRAEQEQVFSPTPR 333 (660)
Q Consensus 275 ~~~~iLVF~~~~~~i~~l~~~L~~~~~~~~~~~----------~-----------~~~v~~lh~~l~~~~r~~v~~~f~~ 333 (660)
.++++||||+++++++.+++.|.+......... . +..+.++||+|++++|..+++.|++
T Consensus 241 ~~~~~LVF~~s~~~~~~~a~~L~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~~~v~~~h~~l~~~~R~~v~~~f~~ 320 (702)
T 2p6r_A 241 ENGGVLVFESTRRGAEKTAVKLSAITAKYVENEGLEKAILEENEGEMSRKLAECVRKGAAFHHAGLLNGQRRVVEDAFRR 320 (702)
T ss_dssp TTCCEEEECSSHHHHHHHHHHHHHHHHTTCCCSSHHHHHHTTCCSHHHHHHHHHHHTTCCEECTTSCHHHHHHHHHHHHT
T ss_pred cCCCEEEEcCCHHHHHHHHHHHHHHHHhhcChHHHHHHHHhhccccccHHHHHHHhcCeEEecCCCCHHHHHHHHHHHHC
Confidence 568899999999999999999987643210000 0 1247889999999999999999999
Q ss_pred CCcEEEEeCCCcccccCCCCeEEEEeCCCccceeecCCCCcccceeeecCHHhHHHhhcccCCCC---CcEEEEccChHH
Q 006122 334 GKRKVVISTNIAETSLTLEGIVYVVDSGFSKQRFYNPISDIENLVVAPISKASARQRAGRAGRVR---PGKCYRLYTEEY 410 (660)
Q Consensus 334 g~~~vlvaT~i~e~Gidip~v~~VId~g~~k~~~~~~~~~~~~l~~~~~s~~~~~QR~GRaGR~~---~G~~~~l~~~~~ 410 (660)
|.++|||||+++++|||+|++++||++ ...|| +. ..|.|.++|.||+|||||.+ +|.||.++++..
T Consensus 321 g~~~vlvaT~~l~~Gidip~~~~VI~~----~~~yd---~~----~~~~s~~~~~Qr~GRaGR~g~~~~G~~~~l~~~~~ 389 (702)
T 2p6r_A 321 GNIKVVVATPTLAAGVNLPARRVIVRS----LYRFD---GY----SKRIKVSEYKQMAGRAGRPGMDERGEAIIIVGKRD 389 (702)
T ss_dssp TSCCEEEECSTTTSSSCCCBSEEEECC----SEEES---SS----EEECCHHHHHHHHTTBSCTTTCSCEEEEEECCGGG
T ss_pred CCCeEEEECcHHhccCCCCceEEEEcC----ceeeC---CC----CCcCCHHHHHHHhhhcCCCCCCCCceEEEEecCcc
Confidence 999999999999999999999999985 45577 11 34999999999999999985 899999999877
Q ss_pred hhhhCC--CCCCCccccccchh------HHHHHHHcCC-CC---ccC---CCCC----CCCCHHHHHHHHHHHHHCCCCC
Q 006122 411 FVKEIP--AEGIPEMQRSNLVS------CVIQLKALGI-DN---ILG---FDWP----ASPPPEAMIRALEVLYSLGVLD 471 (660)
Q Consensus 411 ~~~~~~--~~~~pei~~~~l~~------~~l~l~~~~~-~~---~~~---~~~~----~~p~~~~~~~al~~L~~lgald 471 (660)
++..+. -...||+.++++.. .++.+...|. .+ +.. ..|+ ++|..+.++.+++.|...|+|+
T Consensus 390 ~~~~~~~~l~~~~e~~~s~l~~~~~l~~~~l~~~~~g~~~~~~~~~~~l~~t~~~~~~~~~~~~~~~~al~~L~~~g~i~ 469 (702)
T 2p6r_A 390 REIAVKRYIFGEPERITSKLGVETHLRFHSLSIICDGYAKTLEELEDFFADTFFFKQNEISLSYELERVVRQLENWGMVV 469 (702)
T ss_dssp HHHHHHTTTSSCCCCCCCCCCSHHHHHHHHHHHHHHTSCSSHHHHHHHHHTSTTHHHHCCCCHHHHHHHHHHHHHTTSEE
T ss_pred HHHHHHHHhcCCCCCceeecCcchhHHHHHHHHHHcCCCCCHHHHHHHHHhhhHHHhhhHHHHHHHHHHHHHHHHCcCee
Confidence 654222 24578888887765 5667777763 12 211 1333 3688899999999999999999
Q ss_pred CC--CCcchHHHHHhccCCCChhhhHHHHhhccc--CchhHHHHHHhhcccC-cccccCcchHHHHHHHHH----hh-cC
Q 006122 472 DD--AKLTSPTGFQVAEIPLEPMISKMILSSNEL--GCSEEIITISAVLSIQ-SIWVSGRGAQKELDEAKL----RF-AA 541 (660)
Q Consensus 472 ~~--~~lT~~lG~~~~~lpl~p~~~~~l~~~~~~--~c~~~~~~i~a~ls~~-~~f~~~~~~~~~~~~~~~----~~-~~ 541 (660)
.+ +.+| ++|+.|+.+|++|.++++++.+... .|..+++.|+|+.+.. +++.++.+ ++...... .+ ..
T Consensus 470 ~~~~~~~t-~lG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~i~~~~e~~~i~~r~~e--~~~~~~~~~~~~~~~~~ 546 (702)
T 2p6r_A 470 EAAHLAPT-KLGSLVSRLYIDPLTGFIFHDVLSRMELSDIGALHLICRTPDMERLTVRKTD--SWVEEEAFRLRKELSYY 546 (702)
T ss_dssp ESSSEEEC-HHHHHHHHTTCCHHHHHHHHHHTTTCCCCHHHHHHHHHHSTTSCCCCCCTTT--HHHHHHHHHHGGGSSCC
T ss_pred ECCeeccC-hHHHHHHHHhCCHHHHHHHHHHhhcccCCHHHHHHHhhCCcccccCCCCCch--HHHHHHHHhccccccCC
Confidence 76 7899 7999999999999999999999998 8999999999988864 67888765 22322211 22 11
Q ss_pred C--CC-------cHHHHHHHHHHHHhcCcchhHHhhccCCHHHHHH----HHHHHHHHHHHHHHcCCcccCCCCChHHHH
Q 006122 542 A--EG-------DHVTFLNIYKGFLQSCKSSHWCHKNFINYHAMKK----VIEIREQLRRIAQRIGIVMKSCESDMQVSL 608 (660)
Q Consensus 542 ~--~~-------D~~~~l~~~~~~~~~~~~~~wc~~~~l~~~~l~~----~~~ir~ql~~~l~~~~l~~~~~~~~~~~i~ 608 (660)
+ .. .|+...-+.+.|.+.......|.++++...-++. |..+-+-+.+++...|.. ....+.
T Consensus 547 ~~~~~~~~~~~~~~~k~~~lL~~~~~~~~l~~i~~~~~~~~gdl~~i~~~a~~l~~a~~~i~~~~g~~------~l~~l~ 620 (702)
T 2p6r_A 547 PSDFSVEYDWFLSEVKTALCLKDWIEEKDEDEICAKYGIAPGDLRRIVETAEWLSNAMNRIAEEVGNT------SVSGLT 620 (702)
T ss_dssp CCTTSTTHHHHHHHHHHHHHHHHHHTTCCHHHHHHHTTCCHHHHHHHHHHHHHHHHHHHHHHHHTTCC------SSTTHH
T ss_pred cchhhhhhhhhhhhHHHHHHHHHHHcCCChHHHHHHhCCcHHhHHHHHHHHHHHHHHHHHHHHHcCHH------HHHHHH
Confidence 1 11 4666677888998876667788888876555554 444555555566666643 222345
Q ss_pred HHHHHhhhhh
Q 006122 609 LTLLLVCLER 618 (660)
Q Consensus 609 ~al~~g~~~~ 618 (660)
+.+..|..+.
T Consensus 621 ~ri~~gv~~~ 630 (702)
T 2p6r_A 621 ERIKHGVKEE 630 (702)
T ss_dssp HHHHHTCCGG
T ss_pred HHHHcCCCcc
Confidence 5555555433
No 4
>2zj8_A DNA helicase, putative SKI2-type helicase; RECA fold, ATP-binding, hydrolase, nucleotide- binding; 2.00A {Pyrococcus furiosus} PDB: 2zj5_A* 2zj2_A 2zja_A*
Probab=100.00 E-value=4.6e-52 Score=479.22 Aligned_cols=550 Identities=15% Similarity=0.120 Sum_probs=373.7
Q ss_pred cCCCCCCCccchHhHHHHhcCCCcHHHHHHHHHH-HhcCCEEEEEcCCCCcHHHHHHHHHHhccccCCCeEEEEeCchHH
Q 006122 28 SLSSASSIGYGYASIEKQRQRLPVYKYRTAILYL-VETHATTIIVGETGSGKTTQIPQYLKEAGWADGGRVIACTQPRRL 106 (660)
Q Consensus 28 ~~~~~~~~~~~~~~~~~~~~~lPi~~~~~~i~~~-l~~~~~vii~apTGsGKT~~ip~~l~~~~~~~~~~~i~v~p~r~l 106 (660)
+|.+++++..... ..+.+.....+++|.+++.. +.++++++++||||||||+++++.+++.....+.++++++|.|+|
T Consensus 2 ~f~~l~l~~~~~~-~l~~~g~~~l~~~Q~~~i~~~~~~~~~~lv~apTGsGKT~~~~l~il~~~~~~~~~~l~i~P~raL 80 (720)
T 2zj8_A 2 RVDELRVDERIKS-TLKERGIESFYPPQAEALKSGILEGKNALISIPTASGKTLIAEIAMVHRILTQGGKAVYIVPLKAL 80 (720)
T ss_dssp BGGGCCSCHHHHH-HHHHTTCCBCCHHHHHHHTTTGGGTCEEEEECCGGGCHHHHHHHHHHHHHHHHCSEEEEECSSGGG
T ss_pred cHhhcCCCHHHHH-HHHHCCCCCCCHHHHHHHHHHhcCCCcEEEEcCCccHHHHHHHHHHHHHHHhCCCEEEEEcCcHHH
Confidence 4888898887654 44444445788999999998 889999999999999999888777765544346778888888877
Q ss_pred HHHHHHHHHH--HHhCCeeeeEEeeeeeccccCCCCCceEEEechHHHHHHHhcCCC-CCCCcEEEEeCCC-----cCCc
Q 006122 107 AVQAVASRVA--EEMGVKVGEEVGYTIRFEDFTNKDLTAIKFLTDGVLLREMMDDPL-LTKYSVIMVDEAH-----ERSI 178 (660)
Q Consensus 107 a~~~~~~~~~--~~~~~~~~~~vg~~~~~~~~~~~~~~~I~v~T~~~ll~~l~~~~~-l~~~~~iIiDE~H-----er~~ 178 (660)
+.+. ++++. ..+|..++..+|.. ..+..... .++|+|+||+++.+.+..++. +.++++|||||+| +|+.
T Consensus 81 a~q~-~~~~~~l~~~g~~v~~~~G~~-~~~~~~~~-~~~Iiv~Tpe~l~~~~~~~~~~l~~~~~vIiDE~H~l~~~~r~~ 157 (720)
T 2zj8_A 81 AEEK-FQEFQDWEKIGLRVAMATGDY-DSKDEWLG-KYDIIIATAEKFDSLLRHGSSWIKDVKILVADEIHLIGSRDRGA 157 (720)
T ss_dssp HHHH-HHHTGGGGGGTCCEEEECSCS-SCCCGGGG-GCSEEEECHHHHHHHHHHTCTTGGGEEEEEEETGGGGGCTTTHH
T ss_pred HHHH-HHHHHHHHhcCCEEEEecCCC-CccccccC-CCCEEEECHHHHHHHHHcChhhhhcCCEEEEECCcccCCCcccH
Confidence 7654 44444 23578888888832 22333333 689999999999998887765 8899999999999 3333
Q ss_pred ChhHHHHHHHHHHHhcCCceEEEeeccc-chHHHHHHhhcCCCCCCCcccccCCCCCCeEEEECCccccceEEecCCCch
Q 006122 179 STDILLGLLKKIQRCRSDLRLIISSATI-EAKSMSAFFHARKGRRGLEGVELVPRLEPAILSVEGRGFNVQIHYVEEPVS 257 (660)
Q Consensus 179 ~~d~ll~~l~~~~~~~~~~kii~~SAT~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~ 257 (660)
..+.++ .++ +++.|+|+||||+ +.+.+++|++.. .+..+.++.|++..+......
T Consensus 158 ~~~~ll---~~l---~~~~~ii~lSATl~n~~~~~~~l~~~------------------~~~~~~rp~~l~~~~~~~~~~ 213 (720)
T 2zj8_A 158 TLEVIL---AHM---LGKAQIIGLSATIGNPEELAEWLNAE------------------LIVSDWRPVKLRRGVFYQGFV 213 (720)
T ss_dssp HHHHHH---HHH---BTTBEEEEEECCCSCHHHHHHHTTEE------------------EEECCCCSSEEEEEEEETTEE
T ss_pred HHHHHH---HHh---hcCCeEEEEcCCcCCHHHHHHHhCCc------------------ccCCCCCCCcceEEEEeCCee
Confidence 333332 222 2379999999999 789999999753 233334444443322111000
Q ss_pred -------hHHHHHHHHHHHHHhcCCCCcEEEEcCCHHHHHHHHHHHHHHhhhccC------------C------------
Q 006122 258 -------DYVQAAVSTVLLIHDKEPPGDILVFLTGQDDIDATIQLLTEEARTSKK------------N------------ 306 (660)
Q Consensus 258 -------~~~~~~~~~~~~~~~~~~~~~iLVF~~~~~~i~~l~~~L~~~~~~~~~------------~------------ 306 (660)
.........+.+.+. .++++||||+++++++.++..|.+....... .
T Consensus 214 ~~~~~~~~~~~~~~~~~~~~~~--~~~~~LVF~~sr~~~~~~a~~L~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~l~~ 291 (720)
T 2zj8_A 214 TWEDGSIDRFSSWEELVYDAIR--KKKGALIFVNMRRKAERVALELSKKVKSLLTKPEIRALNELADSLEENPTNEKLAK 291 (720)
T ss_dssp EETTSCEEECSSTTHHHHHHHH--TTCCEEEECSCHHHHHHHHHHHHHHHGGGSCHHHHHHHHHHHHTSCSCHHHHHHHH
T ss_pred eccccchhhhhHHHHHHHHHHh--CCCCEEEEecCHHHHHHHHHHHHHHHHHhcChhhHHHHHHHHHHHhcccchHHHHH
Confidence 000111222223222 4688999999999999999999876432100 0
Q ss_pred CCCeEEEEccCCCCHHHHhhhcCCCCCCCcEEEEeCCCcccccCCCCeEEEEeCCCccceeecCCCCcccceeeecCHHh
Q 006122 307 SSGLIILPLYSGLSRAEQEQVFSPTPRGKRKVVISTNIAETSLTLEGIVYVVDSGFSKQRFYNPISDIENLVVAPISKAS 386 (660)
Q Consensus 307 ~~~~~v~~lh~~l~~~~r~~v~~~f~~g~~~vlvaT~i~e~Gidip~v~~VId~g~~k~~~~~~~~~~~~l~~~~~s~~~ 386 (660)
.....+.+|||+|++++|..+++.|++|.++|||||+++++|||+|++++||+.+ ..|| ..|. .|.|.++
T Consensus 292 ~~~~~v~~~h~~l~~~~R~~v~~~f~~g~~~vlvaT~~l~~Gvdip~~~~VI~~~----~~yd-~~g~-----~~~s~~~ 361 (720)
T 2zj8_A 292 AIRGGVAFHHAGLGRDERVLVEENFRKGIIKAVVATPTLSAGINTPAFRVIIRDI----WRYS-DFGM-----ERIPIIE 361 (720)
T ss_dssp HHTTTEEEECTTSCHHHHHHHHHHHHTTSSCEEEECSTTGGGCCCCBSEEEECCS----EECC-SSSC-----EECCHHH
T ss_pred HHhcCeeeecCCCCHHHHHHHHHHHHCCCCeEEEECcHhhccCCCCceEEEEcCC----eeec-CCCC-----ccCCHHH
Confidence 0012489999999999999999999999999999999999999999999999854 3455 2221 3999999
Q ss_pred HHHhhcccCCCC---CcEEEEccChHHhhh---hCCCCCCCccccc-----cchhHHHHHHHcCCC----Cc---cCCCC
Q 006122 387 ARQRAGRAGRVR---PGKCYRLYTEEYFVK---EIPAEGIPEMQRS-----NLVSCVIQLKALGID----NI---LGFDW 448 (660)
Q Consensus 387 ~~QR~GRaGR~~---~G~~~~l~~~~~~~~---~~~~~~~pei~~~-----~l~~~~l~l~~~~~~----~~---~~~~~ 448 (660)
|.||+|||||.+ +|.||.++++...+. .+.....+++... .|...++.+...|.. ++ ..+.|
T Consensus 362 ~~Qr~GRaGR~g~~~~G~~~~l~~~~~~~~~~~~~~~~~~~~i~s~l~~~~~l~~~ll~~i~~~~~~~~~d~~~~l~~~~ 441 (720)
T 2zj8_A 362 VHQMLGRAGRPKYDEVGEGIIVSTSDDPREVMNHYIFGKPEKLFSQLSNESNLRSQVLALIATFGYSTVEEILKFISNTF 441 (720)
T ss_dssp HHHHHTTBCCTTTCSEEEEEEECSSSCHHHHHHHHTTSCCCCCCCCTTCHHHHHHHHHHHHHHSCCCSHHHHHHHHHTSH
T ss_pred HHHHHhhcCCCCCCCCceEEEEecCccHHHHHHHHhcCCCCCcEeecCchhhHHHHHHHHHHhCCCCCHHHHHHHHHhCh
Confidence 999999999984 899999998765322 1333333333322 355566666666531 11 11233
Q ss_pred C------CCCCHHHHHHHHHHHHHCCCCC-CCC---CcchHHHHHhccCCCChhhhHHHHhhccc----CchhHHHHHHh
Q 006122 449 P------ASPPPEAMIRALEVLYSLGVLD-DDA---KLTSPTGFQVAEIPLEPMISKMILSSNEL----GCSEEIITISA 514 (660)
Q Consensus 449 ~------~~p~~~~~~~al~~L~~lgald-~~~---~lT~~lG~~~~~lpl~p~~~~~l~~~~~~----~c~~~~~~i~a 514 (660)
+ +++..+.+..+++.|...|+|+ +++ .+| ++|+.|+.+|++|.++++++.+... .|..+++.|+|
T Consensus 442 ~~~~~~~~~~~~~~~~~~l~~L~~~~~i~~~~~~~~~~t-~lG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~ 520 (720)
T 2zj8_A 442 YAYQRKDTYSLEEKIRNILYFLLENEFIEISLEDKIRPL-SLGIRTAKLYIDPYTAKMFKDKMEEVVKDPNPIGIFHLIS 520 (720)
T ss_dssp HHHHCSCCHHHHHHHHHHHHHHHHTTSEEECTTSCEEEC-HHHHHHHHHTCCHHHHHHHHHHHHHHHHSCCHHHHHHHHH
T ss_pred HHHhccchHHHHHHHHHHHHHHHHCCCeeECCCCcEeeC-hHHHHHHHHcCCHHHHHHHHHHHHhhccCCCHHHHHHHhc
Confidence 2 2334578999999999999998 655 689 7999999999999999999999887 89999999999
Q ss_pred hccc-CcccccCcchHHHHHHHHH---hh----cCCCC----------cHHHHHHHHHHHHhcCcchhHHhhccCCHHHH
Q 006122 515 VLSI-QSIWVSGRGAQKELDEAKL---RF----AAAEG----------DHVTFLNIYKGFLQSCKSSHWCHKNFINYHAM 576 (660)
Q Consensus 515 ~ls~-~~~f~~~~~~~~~~~~~~~---~~----~~~~~----------D~~~~l~~~~~~~~~~~~~~wc~~~~l~~~~l 576 (660)
++++ .++|.++.+.....+.... .+ -...+ .|+...-+.+.|.+......-+.++.+...-+
T Consensus 521 ~~~e~~~i~~r~~e~~~l~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~k~~llL~~~i~~~~l~~i~~~~~~~~gdl 600 (720)
T 2zj8_A 521 LTPDITPFNYSKREFERLEEEYYEFKDRLYFDDPYISGYDPYLERKFFRAFKTALVLLAWINEVPEGEIVEKYSVEPGDI 600 (720)
T ss_dssp TSTTCCCCCCCHHHHHHHHHHHHHHGGGCSSCCTTSSCCCHHHHHHHHHHHHHHHHHHHHHTTCCHHHHHHHHTCCHHHH
T ss_pred cCccccccccCHHHHHHHHHHHHhccccccccccccccccchhhhhHHHHHHHHHHHHHHHhCCCHHHHHHHhCCChHhH
Confidence 9987 5788877543322222111 01 01111 34555666778887665556666666654444
Q ss_pred ----HHHHHHHHHHHHHHHHcCCcccCCCCChHHHHHHHHHhhhhhhh
Q 006122 577 ----KKVIEIREQLRRIAQRIGIVMKSCESDMQVSLLTLLLVCLERIS 620 (660)
Q Consensus 577 ----~~~~~ir~ql~~~l~~~~l~~~~~~~~~~~i~~al~~g~~~~ia 620 (660)
..|..+-+.+.+++...|.... ......+.+.+-.|..+...
T Consensus 601 ~~~~~~a~~l~~a~~~i~~~~g~~~~--~~~l~~l~~rl~~gv~~e~~ 646 (720)
T 2zj8_A 601 YRIVETAEWLVYSLKEIAKVLGAYEI--VDYLETLRVRVKYGIREELI 646 (720)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHTCGGG--HHHHHHHHHHHHHTCCGGGG
T ss_pred HHHHHHHHHHHHHHHHHHHHcCcHHH--HHHHHHHHHHHHcCCCccch
Confidence 4455556666666666665311 01123466666666654433
No 5
>3i4u_A ATP-dependent RNA helicase DHX8; splicing, ATP-binding, hydrolase, mRNA processing, splicing, nucleotide-binding, nucleus, phosphoprotein, SPLI; 2.10A {Homo sapiens}
Probab=100.00 E-value=2.8e-41 Score=336.71 Aligned_cols=213 Identities=30% Similarity=0.481 Sum_probs=190.6
Q ss_pred ccCCCC-CCCCCHHHHHHHHHHHHHCCCCCCCCCcchHHHHHhccCCCChhhhHHHHhhcccCchhHHHHHHhhcccCcc
Q 006122 443 ILGFDW-PASPPPEAMIRALEVLYSLGVLDDDAKLTSPTGFQVAEIPLEPMISKMILSSNELGCSEEIITISAVLSIQSI 521 (660)
Q Consensus 443 ~~~~~~-~~~p~~~~~~~al~~L~~lgald~~~~lT~~lG~~~~~lpl~p~~~~~l~~~~~~~c~~~~~~i~a~ls~~~~ 521 (660)
...|+| +|||+.+++.+|++.|..+||||++|+|| ++|+.|++||++|++||||+.|..++|.+++++|+|+||++++
T Consensus 5 ~~~l~~~ldpP~~~~l~~A~~~L~~LgAld~~g~lT-~lG~~ma~lPl~P~lakmLl~a~~~~c~~~~l~iaA~Ls~~~~ 83 (270)
T 3i4u_A 5 GPEFELGTRGSPMETLITAMEQLYTLGALDDEGLLT-RLGRRMAEFPLEPMLCKMLIMSVHLGCSEEMLTIVSMLSVQNV 83 (270)
T ss_dssp ---------CCHHHHHHHHHHHHHHHTSBCTTSCBC-HHHHHHTTSCSCHHHHHHHHHHHHTTCHHHHHHHHHHHTSSCC
T ss_pred hhccccCCCCcCHHHHHHHHHHHHHcCCcCCCCCcc-HHHHHHHhCCCCHHHHHHHHHhhhcCCHHHHHHHHHHHCCCcc
Confidence 356788 99999999999999999999999999999 7999999999999999999999999999999999999999999
Q ss_pred cccCcchHHHHHHHHHhhcCCCCcHHHHHHHHHHHHhcCcchhHHhhccCCHHHHHHHHHHHHHHHHHHHHcCCcccCCC
Q 006122 522 WVSGRGAQKELDEAKLRFAAAEGDHVTFLNIYKGFLQSCKSSHWCHKNFINYHAMKKVIEIREQLRRIAQRIGIVMKSCE 601 (660)
Q Consensus 522 f~~~~~~~~~~~~~~~~~~~~~~D~~~~l~~~~~~~~~~~~~~wc~~~~l~~~~l~~~~~ir~ql~~~l~~~~l~~~~~~ 601 (660)
|.+|.+.+++++++|++|....|||++++|+|++|.+.+.+.+||++|||++++|++|.++|+||.++|++.++...+++
T Consensus 84 f~~p~~~~~~a~~~~~~f~~~~sD~ltlLn~~~~~~~~~~~~~wC~~~fL~~~~l~~~~~ir~QL~~~l~~~~~~~~s~~ 163 (270)
T 3i4u_A 84 FYRPKDKQALADQKKAKFHQTEGDHLTLLAVYNSWKNNKFSNPWCYENFIQARSLRRAQDIRKQMLGIMDRHKLDVVSCG 163 (270)
T ss_dssp BCCCGGGHHHHHHHHHTTCBTTBHHHHHHHHHHHHHHTTTCHHHHHHTTBCHHHHHHHHHHHHHHHHHHHHTTCCCCCCT
T ss_pred ccCCchhHHHHHHHHHHccCCCChHHHHHHHHHHHHHcCchhhHHHHhcCCHHHHHHHHHHHHHHHHHHHHcCCCcCCCc
Confidence 99999999999999999999999999999999999998888899999999999999999999999999999999888888
Q ss_pred CChHHHHHHHHHhhhhhhhccCCCCCcccccccCCCCcEEEccCCC-------CcEE----EecCcccc
Q 006122 602 SDMQVSLLTLLLVCLERISTLYDFPKLMGTCMPSAGCSFVYHVTCS-------PVLC----VCTGRFTD 659 (660)
Q Consensus 602 ~~~~~i~~al~~g~~~~ia~~~~~~~~~~~~~~~~~~~~~~hp~~~-------~~~~----~~~~~~~~ 659 (660)
.+++.|++||++||++|+|++...+.|... ..|+.|++||+|+ |++| .++..|++
T Consensus 164 ~~~~~i~~~L~aG~~~nvA~~~~~~~Y~~~---~~~~~v~iHPsS~L~~~~p~wvvy~Elv~Tsk~y~r 229 (270)
T 3i4u_A 164 KSTVRVQKAICSGFFRNAAKKDPQEGYRTL---IDQQVVYIHPSSALFNRQPEWVVYHELVLTTKEYMR 229 (270)
T ss_dssp TCTHHHHHHHHHHHGGGEEEECSSSSEEET---TTCCEEEECTTSTTTTSCCSEEEEEEEEESSSEEEE
T ss_pred chHHHHHHHHHHHhHHHHheeCCCCceEEc---cCCCEEEECchhhhcCCCCCEEEEEehhhhhHhHHH
Confidence 889999999999999999998766556443 5789999999998 7777 35555654
No 6
>4f92_B U5 small nuclear ribonucleoprotein 200 kDa helica; RNP remodeling, PRE-mRNA splicing, spliceosome catalytic ACT DEXD/H-box RNA helicase; HET: SAN; 2.66A {Homo sapiens} PDB: 4f93_B* 4f91_B
Probab=100.00 E-value=3.5e-39 Score=394.62 Aligned_cols=460 Identities=15% Similarity=0.125 Sum_probs=299.6
Q ss_pred ccchHhHHHHhcCCCcHHHHHHHHHHH-hcCCEEEEEcCCCCcHHHHHHHHHHhccc-cCCCeEEEEeCchHHHHHHHHH
Q 006122 36 GYGYASIEKQRQRLPVYKYRTAILYLV-ETHATTIIVGETGSGKTTQIPQYLKEAGW-ADGGRVIACTQPRRLAVQAVAS 113 (660)
Q Consensus 36 ~~~~~~~~~~~~~lPi~~~~~~i~~~l-~~~~~vii~apTGsGKT~~ip~~l~~~~~-~~~~~~i~v~p~r~la~~~~~~ 113 (660)
.+.+.++...+... ..+.|.+++..+ .++++++|+||||||||++....++.... .+++++||++|+|+|+.|.+.+
T Consensus 913 ~~~~e~l~~~~f~~-fnpiQ~q~~~~l~~~~~nvlv~APTGSGKTliaelail~~l~~~~~~kavyi~P~raLa~q~~~~ 991 (1724)
T 4f92_B 913 NSAFESLYQDKFPF-FNPIQTQVFNTVYNSDDNVFVGAPTGSGKTICAEFAILRMLLQSSEGRCVYITPMEALAEQVYMD 991 (1724)
T ss_dssp CHHHHTTTTTTCSB-CCHHHHHHHHHHHSCCSCEEEECCTTSCCHHHHHHHHHHHHHHCTTCCEEEECSCHHHHHHHHHH
T ss_pred CHHHHHHHHhcCCC-CCHHHHHHHHHHhcCCCcEEEEeCCCCCchHHHHHHHHHHHHhCCCCEEEEEcChHHHHHHHHHH
Confidence 34444554433333 456676777766 67789999999999999666555544422 2456799999999999885443
Q ss_pred ---HHHHHhCCeeeeEEeeeeeccccCCCCCceEEEechHHHHHHHhcC---CCCCCCcEEEEeCCCcCC----cChhHH
Q 006122 114 ---RVAEEMGVKVGEEVGYTIRFEDFTNKDLTAIKFLTDGVLLREMMDD---PLLTKYSVIMVDEAHERS----ISTDIL 183 (660)
Q Consensus 114 ---~~~~~~~~~~~~~vg~~~~~~~~~~~~~~~I~v~T~~~ll~~l~~~---~~l~~~~~iIiDE~Her~----~~~d~l 183 (660)
++.+..|..++..+|... .+..... +++|+|+|||++...+.+. ..+.++++||+||+|..+ ...+..
T Consensus 992 ~~~~f~~~~g~~V~~ltGd~~-~~~~~~~-~~~IiV~TPEkld~llr~~~~~~~l~~v~lvViDE~H~l~d~rg~~le~i 1069 (1724)
T 4f92_B 992 WYEKFQDRLNKKVVLLTGETS-TDLKLLG-KGNIIISTPEKWDILSRRWKQRKNVQNINLFVVDEVHLIGGENGPVLEVI 1069 (1724)
T ss_dssp HHHHHTTTSCCCEEECCSCHH-HHHHHHH-HCSEEEECHHHHHHHHTTTTTCHHHHSCSEEEECCGGGGGSTTHHHHHHH
T ss_pred HHHHhchhcCCEEEEEECCCC-cchhhcC-CCCEEEECHHHHHHHHhCcccccccceeeEEEeechhhcCCCCCccHHHH
Confidence 333345667776666321 1111223 5899999999987666432 237899999999999332 222223
Q ss_pred HHHHHHHHH-hcCCceEEEeeccc-chHHHHHHhhcCCCCCCCcccccCCCCCCeEEEECC--ccccceEEecCCCchhH
Q 006122 184 LGLLKKIQR-CRSDLRLIISSATI-EAKSMSAFFHARKGRRGLEGVELVPRLEPAILSVEG--RGFNVQIHYVEEPVSDY 259 (660)
Q Consensus 184 l~~l~~~~~-~~~~~kii~~SAT~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~v~~~~~~~~~~~~ 259 (660)
+..++.+.. ..+++|+|+||||+ |++++++|++..... .+.+.. |+.|.+.+.........
T Consensus 1070 l~rl~~i~~~~~~~~riI~lSATl~N~~dla~WL~~~~~~---------------~~~~~~~~RPvpL~~~i~~~~~~~~ 1134 (1724)
T 4f92_B 1070 CSRMRYISSQIERPIRIVALSSSLSNAKDVAHWLGCSATS---------------TFNFHPNVRPVPLELHIQGFNISHT 1134 (1724)
T ss_dssp HHHHHHHHHTTSSCCEEEEEESCBTTHHHHHHHHTCCSTT---------------EEECCGGGCSSCEEEEEEEECCCSH
T ss_pred HHHHHHHHhhcCCCceEEEEeCCCCCHHHHHHHhCCCCCC---------------eEEeCCCCCCCCeEEEEEeccCCCc
Confidence 333333332 45679999999999 999999999865421 223322 33333333222111111
Q ss_pred ---HHHHHHH-HHHHHhcCCCCcEEEEcCCHHHHHHHHHHHHHHhhhccCCC-------------------------CCe
Q 006122 260 ---VQAAVST-VLLIHDKEPPGDILVFLTGQDDIDATIQLLTEEARTSKKNS-------------------------SGL 310 (660)
Q Consensus 260 ---~~~~~~~-~~~~~~~~~~~~iLVF~~~~~~i~~l~~~L~~~~~~~~~~~-------------------------~~~ 310 (660)
....... ...+......+++||||++++.++.++..|........... ...
T Consensus 1135 ~~~~~~~~~~~~~~i~~~~~~~~~lVF~~sR~~~~~~A~~L~~~~~~~~~~~~~~~~~~~~l~~~l~~~~d~~L~~~l~~ 1214 (1724)
T 4f92_B 1135 QTRLLSMAKPVYHAITKHSPKKPVIVFVPSRKQTRLTAIDILTTCAADIQRQRFLHCTEKDLIPYLEKLSDSTLKETLLN 1214 (1724)
T ss_dssp HHHHHTTHHHHHHHHHHHCSSSCEEEEESSHHHHHHHHHHHHHHHHHTTCTTTTBCSCHHHHHHHHTTCCCHHHHHHHHT
T ss_pred hhhhhhhcchHHHHHHHhcCCCCeeeeCCCHHHHHHHHHHHHHHHhhccchhhhhcccHHHHHHHHhhcccHHHHHHHhC
Confidence 1111111 11223345678899999999999999988876543211100 023
Q ss_pred EEEEccCCCCHHHHhhhcCCCCCCCcEEEEeCCCcccccCCCCeEEEEeCCCccceeecCCCCcccceeeecCHHhHHHh
Q 006122 311 IILPLYSGLSRAEQEQVFSPTPRGKRKVVISTNIAETSLTLEGIVYVVDSGFSKQRFYNPISDIENLVVAPISKASARQR 390 (660)
Q Consensus 311 ~v~~lh~~l~~~~r~~v~~~f~~g~~~vlvaT~i~e~Gidip~v~~VId~g~~k~~~~~~~~~~~~l~~~~~s~~~~~QR 390 (660)
.|++|||||++++|..+++.|++|.++|||||+++++|||+|++++||.. ...||..... ..|.+..+|.||
T Consensus 1215 GIa~hHagL~~~~R~~VE~lF~~G~i~VLvaT~tlA~GVnlPa~~VVI~~----~~~~dg~~~~----~~~~s~~~~~Qm 1286 (1724)
T 4f92_B 1215 GVGYLHEGLSPMERRLVEQLFSSGAIQVVVASRSLCWGMNVAAHLVIIMD----TQYYNGKIHA----YVDYPIYDVLQM 1286 (1724)
T ss_dssp TEEEECTTSCHHHHHHHHHHHHHTSBCEEEEEGGGSSSCCCCBSEEEEEC----SEEEETTTTE----EEECCHHHHHHH
T ss_pred CEEEECCCCCHHHHHHHHHHHHCCCCeEEEEChHHHcCCCCCccEEEEec----CccccCcccc----cCCCCHHHHHHh
Confidence 48999999999999999999999999999999999999999999999964 2346654432 238999999999
Q ss_pred hcccCCC---CCcEEEEccChHH---hhhhCCCCCCCcccc----ccchhHHHHHHHcCC-CC------ccCCCC-----
Q 006122 391 AGRAGRV---RPGKCYRLYTEEY---FVKEIPAEGIPEMQR----SNLVSCVIQLKALGI-DN------ILGFDW----- 448 (660)
Q Consensus 391 ~GRaGR~---~~G~~~~l~~~~~---~~~~~~~~~~pei~~----~~l~~~~l~l~~~~~-~~------~~~~~~----- 448 (660)
+|||||. ..|.|+.++.+.. +.. +.. .|+... ..+.+.++.....|. .+ .....|
T Consensus 1287 ~GRAGR~g~d~~G~avll~~~~~~~~~~~-ll~--~~~pveS~L~~~l~~~l~~eI~~~~i~~~~d~~~~l~~Tfl~~r~ 1363 (1724)
T 4f92_B 1287 VGHANRPLQDDEGRCVIMCQGSKKDFFKK-FLY--EPLPVESHLDHCMHDHFNAEIVTKTIENKQDAVDYLTWTFLYRRM 1363 (1724)
T ss_dssp HTTBCCTTTCSCEEEEEEEEGGGHHHHHH-HTT--SCBCCCCCGGGSCHHHHHHHHHTTSCCBHHHHHHHHTTSSHHHHH
T ss_pred hccccCCCCCCceEEEEEecchHHHHHHH-HhC--CCCceeeecccchHHHHHHHHHhcccCCHHHHHHHHHhhHHHHHH
Confidence 9999998 4799999987543 333 222 223333 344555555554442 11 011111
Q ss_pred --------CCC--------CCHHHHHHHHHHHHHCCCCC--CCCC--cchHHHHHhccCCCChhhhHHHHhhcccCch-h
Q 006122 449 --------PAS--------PPPEAMIRALEVLYSLGVLD--DDAK--LTSPTGFQVAEIPLEPMISKMILSSNELGCS-E 507 (660)
Q Consensus 449 --------~~~--------p~~~~~~~al~~L~~lgald--~~~~--lT~~lG~~~~~lpl~p~~~~~l~~~~~~~c~-~ 507 (660)
+.. ...+.++.+++.|.+.|+|. +++. .| ++|++++.++++|..++++..+...++. .
T Consensus 1364 ~~nP~~y~l~~~~~~~~~~~l~~lv~~~l~~L~~~~~I~~~~~~~l~~T-~lG~i~s~~yi~~~t~~~~~~~l~~~~~~~ 1442 (1724)
T 4f92_B 1364 TQNPNYYNLQGISHRHLSDHLSELVEQTLSDLEQSKCISIEDEMDVAPL-NLGMIAAYYYINYTTIELFSMSLNAKTKVR 1442 (1724)
T ss_dssp HHSGGGTTCSCCSHHHHHHHHHHHHHHHHHHHHHTTSEEEETTTEEEEC-HHHHHHHHTTCCHHHHHHHHHHCCTTCCHH
T ss_pred hcCcccccccccchhhHHHHHHHHHHHHHHHHHHCCCEEEcCCCCEeec-HHHHHHHHHCCCHHHHHHHHHhccccCCHH
Confidence 111 12345778999999999995 4443 58 7999999999999999999988776654 5
Q ss_pred HHHHHHhhcccC-cccccC
Q 006122 508 EIITISAVLSIQ-SIWVSG 525 (660)
Q Consensus 508 ~~~~i~a~ls~~-~~f~~~ 525 (660)
.++.+++..... ++..+.
T Consensus 1443 ~~L~il~~a~ef~~i~~R~ 1461 (1724)
T 4f92_B 1443 GLIEIISNAAEYENIPIRH 1461 (1724)
T ss_dssp HHHHHHHTSGGGTTCCCCT
T ss_pred HHHHHhcCCcccccccccc
Confidence 566666654443 344443
No 7
>4f92_B U5 small nuclear ribonucleoprotein 200 kDa helica; RNP remodeling, PRE-mRNA splicing, spliceosome catalytic ACT DEXD/H-box RNA helicase; HET: SAN; 2.66A {Homo sapiens} PDB: 4f93_B* 4f91_B
Probab=100.00 E-value=1.9e-39 Score=397.00 Aligned_cols=460 Identities=17% Similarity=0.158 Sum_probs=298.1
Q ss_pred cHHHHHHHHH-HHhcCCEEEEEcCCCCcHHHHHHHHHHhcc----------ccCCCeEEEEeCchHHHHHHHHHH--HHH
Q 006122 51 VYKYRTAILY-LVETHATTIIVGETGSGKTTQIPQYLKEAG----------WADGGRVIACTQPRRLAVQAVASR--VAE 117 (660)
Q Consensus 51 i~~~~~~i~~-~l~~~~~vii~apTGsGKT~~ip~~l~~~~----------~~~~~~~i~v~p~r~la~~~~~~~--~~~ 117 (660)
+...|.+++. ++.++++++|+||||||||......++... ...+.++||++|.|+|+.+.+... ...
T Consensus 80 ln~iQs~~~~~al~~~~N~lv~APTGsGKTlva~l~il~~l~~~~~~~~~~~~~~~k~lyiaP~kALa~e~~~~l~~~~~ 159 (1724)
T 4f92_B 80 LNRIQSKLYRAALETDENLLLCAPTGAGKTNVALMCMLREIGKHINMDGTINVDDFKIIYIAPMRSLVQEMVGSFGKRLA 159 (1724)
T ss_dssp CCHHHHHTHHHHHTCCCCEEEECCTTSCCHHHHHHHHHHHHGGGCCTTSSCCTTSCEEEEECSSHHHHHHHHHHHHHHHT
T ss_pred CCHHHHHHHHHHHcCCCcEEEEeCCcchHHHHHHHHHHHHHHhhccccccccCCCCEEEEECCHHHHHHHHHHHHHHHHh
Confidence 4455666665 567889999999999999955443333221 123567899999999999865443 223
Q ss_pred HhCCeeeeEEeeeeeccccCCCCCceEEEechHHHHHHHhcCC---CCCCCcEEEEeCCC----cCCcChhHHHHHHHH-
Q 006122 118 EMGVKVGEEVGYTIRFEDFTNKDLTAIKFLTDGVLLREMMDDP---LLTKYSVIMVDEAH----ERSISTDILLGLLKK- 189 (660)
Q Consensus 118 ~~~~~~~~~vg~~~~~~~~~~~~~~~I~v~T~~~ll~~l~~~~---~l~~~~~iIiDE~H----er~~~~d~ll~~l~~- 189 (660)
..|..++..+|.... ...... .++|+|+||+++...+.... .++++++|||||+| +|+...+.++..+.+
T Consensus 160 ~~gi~V~~~tGd~~~-~~~~~~-~~~IlVtTpEkld~llr~~~~~~~l~~v~~vIiDEvH~l~d~RG~~lE~~l~rl~~~ 237 (1724)
T 4f92_B 160 TYGITVAELTGDHQL-CKEEIS-ATQIIVCTPEKWDIITRKGGERTYTQLVRLIILDEIHLLHDDRGPVLEALVARAIRN 237 (1724)
T ss_dssp TTTCCEEECCSSCSS-CCTTGG-GCSEEEECHHHHHHHTTSSTTHHHHTTEEEEEETTGGGGGSTTHHHHHHHHHHHHHH
T ss_pred hCCCEEEEEECCCCC-CccccC-CCCEEEECHHHHHHHHcCCccchhhcCcCEEEEecchhcCCccHHHHHHHHHHHHHH
Confidence 457788888774322 112223 68999999999865544332 37899999999999 444333333332222
Q ss_pred HHHhcCCceEEEeeccc-chHHHHHHhhcCCCCCCCcccccCCCCCCeEEEECC--ccccceEEecCCCchhH---HHHH
Q 006122 190 IQRCRSDLRLIISSATI-EAKSMSAFFHARKGRRGLEGVELVPRLEPAILSVEG--RGFNVQIHYVEEPVSDY---VQAA 263 (660)
Q Consensus 190 ~~~~~~~~kii~~SAT~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~v~~~~~~~~~~~~---~~~~ 263 (660)
.....+++|+|+||||+ |.+++++|++..+.. ....+.. |+.|++.++........ ....
T Consensus 238 ~~~~~~~~riI~LSATl~N~~dvA~wL~~~~~~--------------~~~~~~~~~RPvpL~~~~~~~~~~~~~~~~~~~ 303 (1724)
T 4f92_B 238 IEMTQEDVRLIGLSATLPNYEDVATFLRVDPAK--------------GLFYFDNSFRPVPLEQTYVGITEKKAIKRFQIM 303 (1724)
T ss_dssp HHHHTCCCEEEEEECSCTTHHHHHHHTTCCHHH--------------HEEECCGGGCSSCEEEECCEECCCCHHHHHHHH
T ss_pred HHhCCCCCcEEEEecccCCHHHHHHHhCCCCCC--------------CeEEECCCCccCccEEEEeccCCcchhhhhHHH
Confidence 23456789999999999 899999999864310 0222333 23344444432222111 1111
Q ss_pred HHHHHH-HHhcCCCCcEEEEcCCHHHHHHHHHHHHHHhhhccC----------------------------CCCCeEEEE
Q 006122 264 VSTVLL-IHDKEPPGDILVFLTGQDDIDATIQLLTEEARTSKK----------------------------NSSGLIILP 314 (660)
Q Consensus 264 ~~~~~~-~~~~~~~~~iLVF~~~~~~i~~l~~~L~~~~~~~~~----------------------------~~~~~~v~~ 314 (660)
...+.. +.....++++||||++++.++.+++.|.+....... ......|++
T Consensus 304 ~~~~~~~v~~~~~~~~~LVF~~sR~~~~~~A~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~Gva~ 383 (1724)
T 4f92_B 304 NEIVYEKIMEHAGKNQVLVFVHSRKETGKTARAIRDMCLEKDTLGLFLREGSASTEVLRTEAEQCKNLELKDLLPYGFAI 383 (1724)
T ss_dssp HHHHHHHHTTCCSSCCEEEECSSTTTTHHHHHHHHHHHHHTTSTTCCSSCCTTCSSHHHHTTSCCSTHHHHHHTTTTEEE
T ss_pred HHHHHHHHHHHhcCCcEEEECCCHHHHHHHHHHHHHHHhhccchhhhcccchhHHHHHHhhhcccccHHHHHHhhcCEEE
Confidence 122222 223345678999999999999999999876432110 001234899
Q ss_pred ccCCCCHHHHhhhcCCCCCCCcEEEEeCCCcccccCCCCeEEEEeCCCccceeecCCCCcccceeeecCHHhHHHhhccc
Q 006122 315 LYSGLSRAEQEQVFSPTPRGKRKVVISTNIAETSLTLEGIVYVVDSGFSKQRFYNPISDIENLVVAPISKASARQRAGRA 394 (660)
Q Consensus 315 lh~~l~~~~r~~v~~~f~~g~~~vlvaT~i~e~Gidip~v~~VId~g~~k~~~~~~~~~~~~l~~~~~s~~~~~QR~GRa 394 (660)
|||||++++|..+++.|++|.++|||||+++++|||+|++++||.. ...||+..+.. .|+|..+|.||+|||
T Consensus 384 HHagL~~~~R~~vE~~F~~G~i~vlvaTsTLa~GVNlPa~~vVI~~----~~~~~~~~~~~----~~ls~~~~~Qm~GRA 455 (1724)
T 4f92_B 384 HHAGMTRVDRTLVEDLFADKHIQVLVSTATLAWGVNLPAHTVIIKG----TQVYSPEKGRW----TELGALDILQMLGRA 455 (1724)
T ss_dssp ECSSSCTHHHHHHHHHHHTTCCCEEEECHHHHHHSCCCBSEEEEEC----CEEEETTTTEE----EECCHHHHHHHHTTB
T ss_pred EcCCCCHHHHHHHHHHHHCCCCeEEEEcchhHhhCCCCCceEEEeC----CEEecCcCCCc----ccCCHHHHHHhhhhc
Confidence 9999999999999999999999999999999999999999999963 35688876532 389999999999999
Q ss_pred CCC---CCcEEEEccChHH---hhhhCCCCC-CCccccccchhHHHHHHHcC-CCCc--------------------cCC
Q 006122 395 GRV---RPGKCYRLYTEEY---FVKEIPAEG-IPEMQRSNLVSCVIQLKALG-IDNI--------------------LGF 446 (660)
Q Consensus 395 GR~---~~G~~~~l~~~~~---~~~~~~~~~-~pei~~~~l~~~~l~l~~~~-~~~~--------------------~~~ 446 (660)
||. ..|.++.+.++++ +...+.... +-.-+...+.+.+++...+| +.+. ..+
T Consensus 456 GR~g~d~~G~~ii~~~~~~~~~~~~ll~~~~pieS~l~~~l~d~L~aeI~~g~i~~~~~a~~~l~~T~~~~r~~~~p~~y 535 (1724)
T 4f92_B 456 GRPQYDTKGEGILITSHGELQYYLSLLNQQLPIESQMVSKLPDMLNAEIVLGNVQNAKDAVNWLGYAYLYIRMLRSPTLY 535 (1724)
T ss_dssp SCTTTCSCEEEEEEEESTTCCHHHHHTTTCSCCCCCTTTTHHHHHHHHHHHTSCCBHHHHHHHHHHSHHHHHHHHCTTTT
T ss_pred cCCCCCCccEEEEEecchhHHHHHHHHcCCCcchhhccccHHHHHHHHHHHhhcCCHHHHHHHHhccHHHHHhhhChhhh
Confidence 997 5799999887653 223122111 11112223444444443333 1111 000
Q ss_pred ----------CCCCCCCHHHHHHHHHHHHHCCCCC---CCC--CcchHHHHHhccCCCChhhhHHHHhhcccCch-hHHH
Q 006122 447 ----------DWPASPPPEAMIRALEVLYSLGVLD---DDA--KLTSPTGFQVAEIPLEPMISKMILSSNELGCS-EEII 510 (660)
Q Consensus 447 ----------~~~~~p~~~~~~~al~~L~~lgald---~~~--~lT~~lG~~~~~lpl~p~~~~~l~~~~~~~c~-~~~~ 510 (660)
+.++....+.+..++..|.+.|+|. ++| ..| ++|++|++++++|..++.+.......+. .+++
T Consensus 536 ~~~~~~~~~d~~l~~~~~~~i~~~~~~L~~~~li~~d~~~~~~~~T-~lGr~~s~~yi~~~t~~~~~~~l~~~~~~~~ll 614 (1724)
T 4f92_B 536 GISHDDLKGDPLLDQRRLDLVHTAALMLDKNNLVKYDKKTGNFQVT-ELGRIASHYYITNDTVQTYNQLLKPTLSEIELF 614 (1724)
T ss_dssp TCCHHHHHHCTTCHHHHHHHHHHHHHHHHHTTSEEECTTTCBEEEC-HHHHHHHHTTCCHHHHHHHHHHCCTTCCHHHHH
T ss_pred ccCccccccchHHHHHHHHHHHHHHHHHHHCCCeeeecCCCccccc-hHHHHHHHhcCCHHHHHHHHhhcCCCCCHHHHH
Confidence 1111122345778999999999994 223 468 6999999999999999999988776554 4566
Q ss_pred HHHhhcccC-cccccCcchHHHHHHHH
Q 006122 511 TISAVLSIQ-SIWVSGRGAQKELDEAK 536 (660)
Q Consensus 511 ~i~a~ls~~-~~f~~~~~~~~~~~~~~ 536 (660)
.+.|+.+.. ++..+. ++..+.+...
T Consensus 615 ~~is~s~ef~~i~~R~-~E~~~l~~l~ 640 (1724)
T 4f92_B 615 RVFSLSSEFKNITVRE-EEKLELQKLL 640 (1724)
T ss_dssp HHHHTCGGGTTCCCCG-GGHHHHHHHH
T ss_pred HHHhCChhhccCCcCH-HHHHHHHHHH
Confidence 666665544 344433 3444444443
No 8
>3eiq_A Eukaryotic initiation factor 4A-I; PDCD4, anti-oncogene, apoptosis, cell cycle, nucleus, phosph RNA-binding, ATP-binding, helicase, hydrolase; 3.50A {Homo sapiens}
Probab=100.00 E-value=1e-40 Score=360.09 Aligned_cols=337 Identities=16% Similarity=0.203 Sum_probs=230.1
Q ss_pred cccCCCCCCCccchHhHHHHhcCCCcHHHHHHHHHHHhcCCEEEEEcCCCCcHHHHHHHHHHhcccc--CCCeEEEEeCc
Q 006122 26 SSSLSSASSIGYGYASIEKQRQRLPVYKYRTAILYLVETHATTIIVGETGSGKTTQIPQYLKEAGWA--DGGRVIACTQP 103 (660)
Q Consensus 26 ~~~~~~~~~~~~~~~~~~~~~~~lPi~~~~~~i~~~l~~~~~vii~apTGsGKT~~ip~~l~~~~~~--~~~~~i~v~p~ 103 (660)
..+|.+++++......+.+ ....+.+.+|.+++..+.+++++++.+|||||||++....+...... .+.++++++|+
T Consensus 39 ~~~f~~~~l~~~~~~~l~~-~~~~~~~~~Q~~~i~~~~~~~~~lv~a~TGsGKT~~~~~~~~~~~~~~~~~~~~lil~P~ 117 (414)
T 3eiq_A 39 VDSFDDMNLSESLLRGIYA-YGFEKPSAIQQRAILPCIKGYDVIAQAQSGTGKTATFAISILQQIELDLKATQALVLAPT 117 (414)
T ss_dssp CCCGGGGCCCHHHHHHHHH-TTCCSCCHHHHHHHHHHHTTCCEEECCCSCSSSHHHHHHHHHHHCCTTSCSCCEEEECSS
T ss_pred hcCHhhCCCCHHHHHHHHH-cCCCCCCHHHHHHhHHHhCCCCEEEECCCCCcccHHHHHHHHHHHhhcCCceeEEEEeCh
Confidence 3568889999888766655 45566788888888888889999999999999997666555544322 34568999999
Q ss_pred hHHHHHHHHHHHHH---HhCCeeeeEEeeeee---ccccCCCCCceEEEechHHHHHHHhcCCC-CCCCcEEEEeCCCcC
Q 006122 104 RRLAVQAVASRVAE---EMGVKVGEEVGYTIR---FEDFTNKDLTAIKFLTDGVLLREMMDDPL-LTKYSVIMVDEAHER 176 (660)
Q Consensus 104 r~la~~~~~~~~~~---~~~~~~~~~vg~~~~---~~~~~~~~~~~I~v~T~~~ll~~l~~~~~-l~~~~~iIiDE~Her 176 (660)
+.|+.| +.+.+.+ ..+..++..+|.... ....... .++|+|+||+.|++.+..+.. +.++++||+||||+
T Consensus 118 ~~L~~q-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~iiv~T~~~l~~~l~~~~~~~~~~~~vViDEah~- 194 (414)
T 3eiq_A 118 RELAQQ-IQKVVMALGDYMGASCHACIGGTNVRAEVQKLQME-APHIIVGTPGRVFDMLNRRYLSPKYIKMFVLDEADE- 194 (414)
T ss_dssp HHHHHH-HHHHHHHHGGGSCCCEEECCCCTTHHHHHHHHTTT-CCSEEEECHHHHHHHHHHTSSCSTTCCEEEECSHHH-
T ss_pred HHHHHH-HHHHHHHHhcccCceEEEEECCcchHHHHHHHhcC-CCCEEEECHHHHHHHHHcCCcccccCcEEEEECHHH-
Confidence 988766 3333333 334555444442111 1111223 689999999999999877665 88899999999994
Q ss_pred CcChhHHHHHHHHHHHhcCCceEEEeecccchHHHH--HHhhcCCCCCCCcccccCCCCCCeEEEECCc---cccceEEe
Q 006122 177 SISTDILLGLLKKIQRCRSDLRLIISSATIEAKSMS--AFFHARKGRRGLEGVELVPRLEPAILSVEGR---GFNVQIHY 251 (660)
Q Consensus 177 ~~~~d~ll~~l~~~~~~~~~~kii~~SAT~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~v~~~~ 251 (660)
..+.++...+...+....++.++|+||||++..... ..+...+ ..+.+... ...+...+
T Consensus 195 ~~~~~~~~~~~~~~~~~~~~~~~i~~SAT~~~~~~~~~~~~~~~~----------------~~~~~~~~~~~~~~~~~~~ 258 (414)
T 3eiq_A 195 MLSRGFKDQIYDIFQKLNSNTQVVLLSATMPSDVLEVTKKFMRDP----------------IRILVKKEELTLEGIRQFY 258 (414)
T ss_dssp HHHTTTHHHHHHHHTTSCTTCEEEEECSCCCHHHHHHHTTTCSSC----------------EEECCCCCCCCTTSCCEEE
T ss_pred hhccCcHHHHHHHHHhCCCCCeEEEEEEecCHHHHHHHHHHcCCC----------------EEEEecCCccCCCCceEEE
Confidence 333344444445555566889999999999654332 2111111 01111111 11223333
Q ss_pred cCCCchhHHHHHHHHHHHHHhcCCCCcEEEEcCCHHHHHHHHHHHHHHhhhccCCCCCeEEEEccCCCCHHHHhhhcCCC
Q 006122 252 VEEPVSDYVQAAVSTVLLIHDKEPPGDILVFLTGQDDIDATIQLLTEEARTSKKNSSGLIILPLYSGLSRAEQEQVFSPT 331 (660)
Q Consensus 252 ~~~~~~~~~~~~~~~~~~~~~~~~~~~iLVF~~~~~~i~~l~~~L~~~~~~~~~~~~~~~v~~lh~~l~~~~r~~v~~~f 331 (660)
......+. ....+..+......+++||||+++++++.+++.|.+. ++.+..+||+++.++|.++++.|
T Consensus 259 ~~~~~~~~---~~~~l~~~~~~~~~~~~lvf~~~~~~~~~l~~~l~~~---------~~~~~~~h~~~~~~~r~~~~~~f 326 (414)
T 3eiq_A 259 INVEREEW---KLDTLCDLYETLTITQAVIFINTRRKVDWLTEKMHAR---------DFTVSAMHGDMDQKERDVIMREF 326 (414)
T ss_dssp EECSSSTT---HHHHHHHHHHSSCCSSCEEECSCHHHHHHHHHHHHTT---------TCCCEEC---CHHHHHHHHHHHH
T ss_pred EEeChHHh---HHHHHHHHHHhCCCCcEEEEeCCHHHHHHHHHHHHhc---------CCeEEEecCCCCHHHHHHHHHHH
Confidence 33322222 2334445555667789999999999999999999765 77899999999999999999999
Q ss_pred CCCCcEEEEeCCCcccccCCCCeEEEEeCCCccceeecCCCCcccceeeecCHHhHHHhhcccCCC-CCcEEEEccChHH
Q 006122 332 PRGKRKVVISTNIAETSLTLEGIVYVVDSGFSKQRFYNPISDIENLVVAPISKASARQRAGRAGRV-RPGKCYRLYTEEY 410 (660)
Q Consensus 332 ~~g~~~vlvaT~i~e~Gidip~v~~VId~g~~k~~~~~~~~~~~~l~~~~~s~~~~~QR~GRaGR~-~~G~~~~l~~~~~ 410 (660)
++|..+|||||+++++|+|+|++++||+++. |.|..+|.||+|||||. ++|.||.++++.+
T Consensus 327 ~~g~~~vlv~T~~~~~Gidip~v~~Vi~~~~------------------p~s~~~~~Qr~GR~gR~g~~g~~~~~~~~~~ 388 (414)
T 3eiq_A 327 RSGSSRVLITTDLLARGIDVQQVSLVINYDL------------------PTNRENYIHRIGRGGRFGRKGVAINMVTEED 388 (414)
T ss_dssp SCC---CEEECSSCC--CCGGGCSCEEESSC------------------CSSTHHHHHHSCCC-------CEEEEECSTH
T ss_pred HcCCCcEEEECCccccCCCccCCCEEEEeCC------------------CCCHHHhhhhcCcccCCCCCceEEEEEcHHH
Confidence 9999999999999999999999999999877 78899999999999999 7899999999765
Q ss_pred hh
Q 006122 411 FV 412 (660)
Q Consensus 411 ~~ 412 (660)
..
T Consensus 389 ~~ 390 (414)
T 3eiq_A 389 KR 390 (414)
T ss_dssp HH
T ss_pred HH
Confidence 54
No 9
>2db3_A ATP-dependent RNA helicase VASA; DEAD-BOX, protein-RNA complex, ATPase, riken structural genomics/proteomics initiative, RSGI; HET: ANP; 2.20A {Drosophila melanogaster}
Probab=100.00 E-value=4.2e-39 Score=349.16 Aligned_cols=332 Identities=20% Similarity=0.257 Sum_probs=237.1
Q ss_pred ccCCCCCCCccchHhHHHHhcCCCcHHHHHHHHHHHhcCCEEEEEcCCCCcHH--HHHHHHHH--hcc---ccCCCeEEE
Q 006122 27 SSLSSASSIGYGYASIEKQRQRLPVYKYRTAILYLVETHATTIIVGETGSGKT--TQIPQYLK--EAG---WADGGRVIA 99 (660)
Q Consensus 27 ~~~~~~~~~~~~~~~~~~~~~~lPi~~~~~~i~~~l~~~~~vii~apTGsGKT--~~ip~~l~--~~~---~~~~~~~i~ 99 (660)
.+|..++++......+.+....-| .+.|.+++..+.++++++++|||||||| +++|.+.. ... ...+.++++
T Consensus 56 ~~f~~~~l~~~l~~~l~~~g~~~p-t~iQ~~ai~~i~~g~d~i~~a~TGsGKT~a~~lpil~~l~~~~~~~~~~~~~~li 134 (434)
T 2db3_A 56 QHFTSADLRDIIIDNVNKSGYKIP-TPIQKCSIPVISSGRDLMACAQTGSGKTAAFLLPILSKLLEDPHELELGRPQVVI 134 (434)
T ss_dssp CCGGGSCCCHHHHHHHHHTTCCSC-CHHHHHHHHHHHTTCCEEEECCTTSSHHHHHHHHHHHHHHHSCCCCCTTCCSEEE
T ss_pred CChhhcCCCHHHHHHHHHcCCCCC-CHHHHHHHHHHhcCCCEEEECCCCCCchHHHHHHHHHHHHhcccccccCCccEEE
Confidence 368888998888877766555545 4566677777888899999999999999 45554422 211 112457899
Q ss_pred EeCchHHHHHHH--HHHHHHHhCCeeeeEEeeeeecc-c-cCCCCCceEEEechHHHHHHHhcCCC-CCCCcEEEEeCCC
Q 006122 100 CTQPRRLAVQAV--ASRVAEEMGVKVGEEVGYTIRFE-D-FTNKDLTAIKFLTDGVLLREMMDDPL-LTKYSVIMVDEAH 174 (660)
Q Consensus 100 v~p~r~la~~~~--~~~~~~~~~~~~~~~vg~~~~~~-~-~~~~~~~~I~v~T~~~ll~~l~~~~~-l~~~~~iIiDE~H 174 (660)
++|+|+|+.|.. ++++....+..++..+|...... . .... .++|+|+||++|++.+..... +.++++||+||||
T Consensus 135 l~PtreLa~Q~~~~~~~~~~~~~~~~~~~~gg~~~~~~~~~l~~-~~~Ivv~Tp~~l~~~l~~~~~~l~~~~~lVlDEah 213 (434)
T 2db3_A 135 VSPTRELAIQIFNEARKFAFESYLKIGIVYGGTSFRHQNECITR-GCHVVIATPGRLLDFVDRTFITFEDTRFVVLDEAD 213 (434)
T ss_dssp ECSSHHHHHHHHHHHHHHTTTSSCCCCEECTTSCHHHHHHHHTT-CCSEEEECHHHHHHHHHTTSCCCTTCCEEEEETHH
T ss_pred EecCHHHHHHHHHHHHHHhccCCcEEEEEECCCCHHHHHHHhhc-CCCEEEEChHHHHHHHHhCCcccccCCeEEEccHh
Confidence 999999988743 33333344566666666332111 1 1123 689999999999999876654 8999999999999
Q ss_pred cCCcChhHHHHHHHHHHH--hcCCceEEEeecccchH--HHHHHhhcCCCCCCCcccccCCCCCCeEEEECC---ccccc
Q 006122 175 ERSISTDILLGLLKKIQR--CRSDLRLIISSATIEAK--SMSAFFHARKGRRGLEGVELVPRLEPAILSVEG---RGFNV 247 (660)
Q Consensus 175 er~~~~d~ll~~l~~~~~--~~~~~kii~~SAT~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~v 247 (660)
+..+.++...+.+.+.. .+++.+++++|||++.+ .+...+...+ ..+.+.. ....+
T Consensus 214 -~~~~~gf~~~~~~i~~~~~~~~~~q~l~~SAT~~~~~~~~~~~~l~~~----------------~~i~~~~~~~~~~~i 276 (434)
T 2db3_A 214 -RMLDMGFSEDMRRIMTHVTMRPEHQTLMFSATFPEEIQRMAGEFLKNY----------------VFVAIGIVGGACSDV 276 (434)
T ss_dssp -HHTSTTTHHHHHHHHHCTTSCSSCEEEEEESCCCHHHHHHHHTTCSSC----------------EEEEESSTTCCCTTE
T ss_pred -hhhccCcHHHHHHHHHhcCCCCCceEEEEeccCCHHHHHHHHHhccCC----------------EEEEecccccccccc
Confidence 56666555444444333 35789999999999543 3332221111 1222221 12233
Q ss_pred eEEecCCCchhHHHHHHHHHHHHHhcCCCCcEEEEcCCHHHHHHHHHHHHHHhhhccCCCCCeEEEEccCCCCHHHHhhh
Q 006122 248 QIHYVEEPVSDYVQAAVSTVLLIHDKEPPGDILVFLTGQDDIDATIQLLTEEARTSKKNSSGLIILPLYSGLSRAEQEQV 327 (660)
Q Consensus 248 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iLVF~~~~~~i~~l~~~L~~~~~~~~~~~~~~~v~~lh~~l~~~~r~~v 327 (660)
...+......+.... +..+..... +++||||+++++++.+++.|.+. ++.+..+||++++++|.++
T Consensus 277 ~~~~~~~~~~~k~~~----l~~~l~~~~-~~~lVF~~t~~~a~~l~~~L~~~---------~~~~~~lhg~~~~~~R~~~ 342 (434)
T 2db3_A 277 KQTIYEVNKYAKRSK----LIEILSEQA-DGTIVFVETKRGADFLASFLSEK---------EFPTTSIHGDRLQSQREQA 342 (434)
T ss_dssp EEEEEECCGGGHHHH----HHHHHHHCC-TTEEEECSSHHHHHHHHHHHHHT---------TCCEEEESTTSCHHHHHHH
T ss_pred ceEEEEeCcHHHHHH----HHHHHHhCC-CCEEEEEeCcHHHHHHHHHHHhC---------CCCEEEEeCCCCHHHHHHH
Confidence 433333333332222 223333333 34999999999999999999875 7889999999999999999
Q ss_pred cCCCCCCCcEEEEeCCCcccccCCCCeEEEEeCCCccceeecCCCCcccceeeecCHHhHHHhhcccCCC-CCcEEEEcc
Q 006122 328 FSPTPRGKRKVVISTNIAETSLTLEGIVYVVDSGFSKQRFYNPISDIENLVVAPISKASARQRAGRAGRV-RPGKCYRLY 406 (660)
Q Consensus 328 ~~~f~~g~~~vlvaT~i~e~Gidip~v~~VId~g~~k~~~~~~~~~~~~l~~~~~s~~~~~QR~GRaGR~-~~G~~~~l~ 406 (660)
++.|++|+.+|||||+++++|+|+|++++||++++ |.+..+|.||+||+||. +.|.|+.++
T Consensus 343 l~~F~~g~~~vLvaT~v~~rGlDi~~v~~VI~~d~------------------p~~~~~y~qriGR~gR~g~~G~a~~~~ 404 (434)
T 2db3_A 343 LRDFKNGSMKVLIATSVASRGLDIKNIKHVINYDM------------------PSKIDDYVHRIGRTGRVGNNGRATSFF 404 (434)
T ss_dssp HHHHHTSSCSEEEECGGGTSSCCCTTCCEEEESSC------------------CSSHHHHHHHHTTSSCTTCCEEEEEEE
T ss_pred HHHHHcCCCcEEEEchhhhCCCCcccCCEEEEECC------------------CCCHHHHHHHhcccccCCCCCEEEEEE
Confidence 99999999999999999999999999999999877 88999999999999999 899999999
Q ss_pred ChH
Q 006122 407 TEE 409 (660)
Q Consensus 407 ~~~ 409 (660)
+++
T Consensus 405 ~~~ 407 (434)
T 2db3_A 405 DPE 407 (434)
T ss_dssp CTT
T ss_pred ecc
Confidence 854
No 10
>3pey_A ATP-dependent RNA helicase DBP5; RECA, DEAD-BOX, ATPase, helicase, mRNA-export, nuclear pore, hydrolase-RNA complex; HET: ADP; 1.40A {Saccharomyces cerevisiae} PDB: 3pew_A* 3pex_A* 3pez_A* 3rrm_A* 3rrn_A* 2kbe_A 3gfp_A 2kbf_A 3pev_A* 3peu_A*
Probab=100.00 E-value=1.6e-38 Score=340.39 Aligned_cols=340 Identities=18% Similarity=0.195 Sum_probs=239.5
Q ss_pred cccCCCCCCCccchHhHHHHhcCCCcHHHHHHHHHHHhcC--CEEEEEcCCCCcHHHHHHHHHHhccc--cCCCeEEEEe
Q 006122 26 SSSLSSASSIGYGYASIEKQRQRLPVYKYRTAILYLVETH--ATTIIVGETGSGKTTQIPQYLKEAGW--ADGGRVIACT 101 (660)
Q Consensus 26 ~~~~~~~~~~~~~~~~~~~~~~~lPi~~~~~~i~~~l~~~--~~vii~apTGsGKT~~ip~~l~~~~~--~~~~~~i~v~ 101 (660)
..+|.+++++......+.+.... ..+++|.+++..+..+ +++++++|||||||++....+..... ..+.++++++
T Consensus 4 ~~~f~~~~l~~~l~~~l~~~~~~-~~~~~Q~~~i~~~~~~~~~~~lv~a~TGsGKT~~~~~~~~~~~~~~~~~~~~lil~ 82 (395)
T 3pey_A 4 AKSFDELGLAPELLKGIYAMKFQ-KPSKIQERALPLLLHNPPRNMIAQSQSGTGKTAAFSLTMLTRVNPEDASPQAICLA 82 (395)
T ss_dssp CCSSTTSCCCHHHHHHHHHTTCC-SCCHHHHHHHHHHHCSSCCCEEEECCTTSCHHHHHHHHHHHHCCTTCCSCCEEEEC
T ss_pred ccCHhhCCCCHHHHHHHHHCCCC-CCCHHHHHHHHHHHcCCCCeEEEECCCCCcHHHHHHHHHHHHhccCCCCccEEEEC
Confidence 36799999999998888775444 4566777777777776 88999999999999665555544322 2345789999
Q ss_pred CchHHHHHHHHHHHHHH---hCCeeeeEEeeeeeccccCCCCCceEEEechHHHHHHHhcCCC-CCCCcEEEEeCCCcCC
Q 006122 102 QPRRLAVQAVASRVAEE---MGVKVGEEVGYTIRFEDFTNKDLTAIKFLTDGVLLREMMDDPL-LTKYSVIMVDEAHERS 177 (660)
Q Consensus 102 p~r~la~~~~~~~~~~~---~~~~~~~~vg~~~~~~~~~~~~~~~I~v~T~~~ll~~l~~~~~-l~~~~~iIiDE~Her~ 177 (660)
|++.|+.|. ++.+.+. .+..++...|. ........ ..+|+|+||+.+.+.+..... +.++++||+||||...
T Consensus 83 P~~~L~~q~-~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~-~~~iiv~T~~~l~~~~~~~~~~~~~~~~iIiDEah~~~ 158 (395)
T 3pey_A 83 PSRELARQT-LEVVQEMGKFTKITSQLIVPD--SFEKNKQI-NAQVIVGTPGTVLDLMRRKLMQLQKIKIFVLDEADNML 158 (395)
T ss_dssp SSHHHHHHH-HHHHHHHTTTSCCCEEEESTT--SSCTTSCB-CCSEEEECHHHHHHHHHTTCBCCTTCCEEEEETHHHHH
T ss_pred CCHHHHHHH-HHHHHHHhcccCeeEEEEecC--chhhhccC-CCCEEEEcHHHHHHHHHcCCcccccCCEEEEEChhhhc
Confidence 999887763 3333332 23333322221 11222223 689999999999998876654 8899999999999544
Q ss_pred cChhHHHHHHHHHHHhcCCceEEEeecccch--HHHHHHhhcCCCCCCCcccccCCCCCCeEEEECCcc---ccceEEec
Q 006122 178 ISTDILLGLLKKIQRCRSDLRLIISSATIEA--KSMSAFFHARKGRRGLEGVELVPRLEPAILSVEGRG---FNVQIHYV 252 (660)
Q Consensus 178 ~~~d~ll~~l~~~~~~~~~~kii~~SAT~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~v~~~~~ 252 (660)
...++...+........++.+++++|||++. ..+...+...+. .+...... ..+...+.
T Consensus 159 ~~~~~~~~~~~~~~~~~~~~~~i~~SAT~~~~~~~~~~~~~~~~~----------------~~~~~~~~~~~~~~~~~~~ 222 (395)
T 3pey_A 159 DQQGLGDQCIRVKRFLPKDTQLVLFSATFADAVRQYAKKIVPNAN----------------TLELQTNEVNVDAIKQLYM 222 (395)
T ss_dssp HSTTHHHHHHHHHHTSCTTCEEEEEESCCCHHHHHHHHHHSCSCE----------------EECCCGGGCSCTTEEEEEE
T ss_pred CccccHHHHHHHHHhCCCCcEEEEEEecCCHHHHHHHHHhCCCCe----------------EEEccccccccccccEEEE
Confidence 3344554444444456678999999999954 333333322210 12221111 12223333
Q ss_pred CCCchhHHHHHHHHHHHHHhcCCCCcEEEEcCCHHHHHHHHHHHHHHhhhccCCCCCeEEEEccCCCCHHHHhhhcCCCC
Q 006122 253 EEPVSDYVQAAVSTVLLIHDKEPPGDILVFLTGQDDIDATIQLLTEEARTSKKNSSGLIILPLYSGLSRAEQEQVFSPTP 332 (660)
Q Consensus 253 ~~~~~~~~~~~~~~~~~~~~~~~~~~iLVF~~~~~~i~~l~~~L~~~~~~~~~~~~~~~v~~lh~~l~~~~r~~v~~~f~ 332 (660)
...... .....+..+......+++||||+++++++.+++.|.+. +..+..+||+++.++|.++++.|+
T Consensus 223 ~~~~~~---~~~~~l~~~~~~~~~~~~lvf~~~~~~~~~l~~~l~~~---------~~~~~~~~~~~~~~~r~~~~~~f~ 290 (395)
T 3pey_A 223 DCKNEA---DKFDVLTELYGLMTIGSSIIFVATKKTANVLYGKLKSE---------GHEVSILHGDLQTQERDRLIDDFR 290 (395)
T ss_dssp ECSSHH---HHHHHHHHHHTTTTSSEEEEECSCHHHHHHHHHHHHHT---------TCCCEEECTTSCHHHHHHHHHHHH
T ss_pred EcCchH---HHHHHHHHHHHhccCCCEEEEeCCHHHHHHHHHHHHhc---------CCcEEEeCCCCCHHHHHHHHHHHH
Confidence 322222 22333444455556789999999999999999999875 678999999999999999999999
Q ss_pred CCCcEEEEeCCCcccccCCCCeEEEEeCCCccceeecCCCCcccceeeecCHHhHHHhhcccCCC-CCcEEEEccChHH
Q 006122 333 RGKRKVVISTNIAETSLTLEGIVYVVDSGFSKQRFYNPISDIENLVVAPISKASARQRAGRAGRV-RPGKCYRLYTEEY 410 (660)
Q Consensus 333 ~g~~~vlvaT~i~e~Gidip~v~~VId~g~~k~~~~~~~~~~~~l~~~~~s~~~~~QR~GRaGR~-~~G~~~~l~~~~~ 410 (660)
+|+.+|||||+++++|+|+|++++||+++... +...+.|..+|.||+|||||. ++|.|+.++++..
T Consensus 291 ~g~~~vlv~T~~~~~Gidip~~~~Vi~~~~p~------------~~~~~~s~~~~~Qr~GR~gR~g~~g~~~~~~~~~~ 357 (395)
T 3pey_A 291 EGRSKVLITTNVLARGIDIPTVSMVVNYDLPT------------LANGQADPATYIHRIGRTGRFGRKGVAISFVHDKN 357 (395)
T ss_dssp TTSCCEEEECGGGSSSCCCTTEEEEEESSCCB------------CTTSSBCHHHHHHHHTTSSCTTCCEEEEEEECSHH
T ss_pred CCCCCEEEECChhhcCCCcccCCEEEEcCCCC------------CCcCCCCHHHhhHhccccccCCCCceEEEEEechH
Confidence 99999999999999999999999999976611 111245999999999999999 7799999998543
No 11
>1s2m_A Putative ATP-dependent RNA helicase DHH1; ATP-binding, RNA-binding, RNA binding protein; 2.10A {Saccharomyces cerevisiae} SCOP: c.37.1.19 c.37.1.19 PDB: 2wax_A* 2way_A
Probab=100.00 E-value=2.6e-38 Score=339.91 Aligned_cols=340 Identities=16% Similarity=0.167 Sum_probs=239.2
Q ss_pred cccccccCCCCCCCccchHhHHHHhcCCCcHHHHHHHHHHHhcCCEEEEEcCCCCcHHHHHHHHHHhccc--cCCCeEEE
Q 006122 22 VVFLSSSLSSASSIGYGYASIEKQRQRLPVYKYRTAILYLVETHATTIIVGETGSGKTTQIPQYLKEAGW--ADGGRVIA 99 (660)
Q Consensus 22 ~~~~~~~~~~~~~~~~~~~~~~~~~~~lPi~~~~~~i~~~l~~~~~vii~apTGsGKT~~ip~~l~~~~~--~~~~~~i~ 99 (660)
......+|.+++++......+.+.... ..+++|.++++.+.+++++++.+|||||||+.....+..... ..+.++++
T Consensus 16 ~~~~~~~f~~~~l~~~l~~~l~~~g~~-~~~~~Q~~~i~~i~~~~~~li~a~TGsGKT~~~~~~~~~~~~~~~~~~~~li 94 (400)
T 1s2m_A 16 LNTKGNTFEDFYLKRELLMGIFEAGFE-KPSPIQEEAIPVAITGRDILARAKNGTGKTAAFVIPTLEKVKPKLNKIQALI 94 (400)
T ss_dssp -----CCGGGGCCCHHHHHHHHHTTCC-SCCHHHHHHHHHHHHTCCEEEECCTTSCHHHHHHHHHHHHCCTTSCSCCEEE
T ss_pred cccccCChhhcCCCHHHHHHHHHCCCC-CCCHHHHHHHHHHhcCCCEEEECCCCcHHHHHHHHHHHHHHhhccCCccEEE
Confidence 334456799999999888877664433 367888888888888889999999999999554443333322 23456899
Q ss_pred EeCchHHHHHHHHHHHHH---HhCCeeeeEEeeeeeccc-cCCCCCceEEEechHHHHHHHhcCCC-CCCCcEEEEeCCC
Q 006122 100 CTQPRRLAVQAVASRVAE---EMGVKVGEEVGYTIRFED-FTNKDLTAIKFLTDGVLLREMMDDPL-LTKYSVIMVDEAH 174 (660)
Q Consensus 100 v~p~r~la~~~~~~~~~~---~~~~~~~~~vg~~~~~~~-~~~~~~~~I~v~T~~~ll~~l~~~~~-l~~~~~iIiDE~H 174 (660)
++|++.|+.|. .+.+.+ ..+..++...|.....+. .......+|+|+||+.+++.+..... +.++++||+||||
T Consensus 95 l~P~~~L~~q~-~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~Ivv~T~~~l~~~~~~~~~~~~~~~~vIiDEaH 173 (400)
T 1s2m_A 95 MVPTRELALQT-SQVVRTLGKHCGISCMVTTGGTNLRDDILRLNETVHILVGTPGRVLDLASRKVADLSDCSLFIMDEAD 173 (400)
T ss_dssp ECSSHHHHHHH-HHHHHHHTTTTTCCEEEECSSSCHHHHHHHTTSCCSEEEECHHHHHHHHHTTCSCCTTCCEEEEESHH
T ss_pred EcCCHHHHHHH-HHHHHHHhcccCceEEEEeCCcchHHHHHHhcCCCCEEEEchHHHHHHHHhCCcccccCCEEEEeCch
Confidence 99998888763 333333 335556555553221111 11122689999999999988876544 8899999999999
Q ss_pred cCCcChhHHHHHHHHHHH-hcCCceEEEeecccchHH---HHHHhhcCCCCCCCcccccCCCCCCeEEEECC--ccccce
Q 006122 175 ERSISTDILLGLLKKIQR-CRSDLRLIISSATIEAKS---MSAFFHARKGRRGLEGVELVPRLEPAILSVEG--RGFNVQ 248 (660)
Q Consensus 175 er~~~~d~ll~~l~~~~~-~~~~~kii~~SAT~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~v~ 248 (660)
+..+.++.. .+..+.. ..+..++++||||++... +..++.... .+.... ....+.
T Consensus 174 -~~~~~~~~~-~~~~i~~~~~~~~~~i~lSAT~~~~~~~~~~~~~~~~~-----------------~~~~~~~~~~~~~~ 234 (400)
T 1s2m_A 174 -KMLSRDFKT-IIEQILSFLPPTHQSLLFSATFPLTVKEFMVKHLHKPY-----------------EINLMEELTLKGIT 234 (400)
T ss_dssp -HHSSHHHHH-HHHHHHTTSCSSCEEEEEESCCCHHHHHHHHHHCSSCE-----------------EESCCSSCBCTTEE
T ss_pred -HhhhhchHH-HHHHHHHhCCcCceEEEEEecCCHHHHHHHHHHcCCCe-----------------EEEeccccccCCce
Confidence 444544443 3333333 456789999999996432 223332211 111111 111223
Q ss_pred EEecCCCchhHHHHHHHHHHHHHhcCCCCcEEEEcCCHHHHHHHHHHHHHHhhhccCCCCCeEEEEccCCCCHHHHhhhc
Q 006122 249 IHYVEEPVSDYVQAAVSTVLLIHDKEPPGDILVFLTGQDDIDATIQLLTEEARTSKKNSSGLIILPLYSGLSRAEQEQVF 328 (660)
Q Consensus 249 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iLVF~~~~~~i~~l~~~L~~~~~~~~~~~~~~~v~~lh~~l~~~~r~~v~ 328 (660)
.++......... ..+..+......+++||||+++++++.+++.|.+. ++.+..+||+++.++|..++
T Consensus 235 ~~~~~~~~~~k~----~~l~~~~~~~~~~~~lVf~~~~~~~~~l~~~L~~~---------~~~~~~~~~~~~~~~r~~~~ 301 (400)
T 1s2m_A 235 QYYAFVEERQKL----HCLNTLFSKLQINQAIIFCNSTNRVELLAKKITDL---------GYSCYYSHARMKQQERNKVF 301 (400)
T ss_dssp EEEEECCGGGHH----HHHHHHHHHSCCSEEEEECSSHHHHHHHHHHHHHH---------TCCEEEECTTSCHHHHHHHH
T ss_pred eEEEEechhhHH----HHHHHHHhhcCCCcEEEEEecHHHHHHHHHHHHhc---------CCCeEEecCCCCHHHHHHHH
Confidence 333333222222 22233333456778999999999999999999886 77899999999999999999
Q ss_pred CCCCCCCcEEEEeCCCcccccCCCCeEEEEeCCCccceeecCCCCcccceeeecCHHhHHHhhcccCCC-CCcEEEEccC
Q 006122 329 SPTPRGKRKVVISTNIAETSLTLEGIVYVVDSGFSKQRFYNPISDIENLVVAPISKASARQRAGRAGRV-RPGKCYRLYT 407 (660)
Q Consensus 329 ~~f~~g~~~vlvaT~i~e~Gidip~v~~VId~g~~k~~~~~~~~~~~~l~~~~~s~~~~~QR~GRaGR~-~~G~~~~l~~ 407 (660)
+.|++|+.+|||||+++++|+|+|++++||+++. |.|..+|.||+|||||. ++|.|+.+++
T Consensus 302 ~~f~~g~~~vLv~T~~~~~Gidip~~~~Vi~~~~------------------p~s~~~~~Qr~GR~gR~g~~g~~~~l~~ 363 (400)
T 1s2m_A 302 HEFRQGKVRTLVCSDLLTRGIDIQAVNVVINFDF------------------PKTAETYLHRIGRSGRFGHLGLAINLIN 363 (400)
T ss_dssp HHHHTTSSSEEEESSCSSSSCCCTTEEEEEESSC------------------CSSHHHHHHHHCBSSCTTCCEEEEEEEC
T ss_pred HHHhcCCCcEEEEcCccccCCCccCCCEEEEeCC------------------CCCHHHHHHhcchhcCCCCCceEEEEec
Confidence 9999999999999999999999999999999777 88999999999999999 8999999999
Q ss_pred hHHhhh
Q 006122 408 EEYFVK 413 (660)
Q Consensus 408 ~~~~~~ 413 (660)
+++...
T Consensus 364 ~~~~~~ 369 (400)
T 1s2m_A 364 WNDRFN 369 (400)
T ss_dssp GGGHHH
T ss_pred cchHHH
Confidence 876543
No 12
>1hv8_A Putative ATP-dependent RNA helicase MJ0669; RNA-binding protein, ATPase, RNA binding protein; 3.00A {Methanocaldococcus jannaschii} SCOP: c.37.1.19 c.37.1.19
Probab=100.00 E-value=2.5e-38 Score=335.44 Aligned_cols=333 Identities=20% Similarity=0.266 Sum_probs=240.5
Q ss_pred ccCCCCCCCccchHhHHHHhcCCCcHHHHHHHHHHHhcC-CEEEEEcCCCCcHHHHHHHHHHhcccc-CCCeEEEEeCch
Q 006122 27 SSLSSASSIGYGYASIEKQRQRLPVYKYRTAILYLVETH-ATTIIVGETGSGKTTQIPQYLKEAGWA-DGGRVIACTQPR 104 (660)
Q Consensus 27 ~~~~~~~~~~~~~~~~~~~~~~lPi~~~~~~i~~~l~~~-~~vii~apTGsGKT~~ip~~l~~~~~~-~~~~~i~v~p~r 104 (660)
.+|.+++++......+.+....- .+++|.+++..+.++ +++++.+|||||||++....+...... .+.++++++|++
T Consensus 6 ~~f~~~~l~~~~~~~l~~~g~~~-~~~~Q~~~i~~~~~~~~~~l~~~~TGsGKT~~~~~~~~~~~~~~~~~~~lil~P~~ 84 (367)
T 1hv8_A 6 MNFNELNLSDNILNAIRNKGFEK-PTDIQMKVIPLFLNDEYNIVAQARTGSGKTASFAIPLIELVNENNGIEAIILTPTR 84 (367)
T ss_dssp CCGGGSSCCHHHHHHHHHHTCCS-CCHHHHHHHHHHHHTCSEEEEECCSSSSHHHHHHHHHHHHSCSSSSCCEEEECSCH
T ss_pred CchhhcCCCHHHHHHHHHcCCCC-CCHHHHHHHHHHhCCCCCEEEECCCCChHHHHHHHHHHHHhcccCCCcEEEEcCCH
Confidence 35899999998887776654444 456666666666555 799999999999996655555443322 345688888888
Q ss_pred HHHHHHHHHHHHHHh---CCeeeeEEeeeeeccc-cCCCCCceEEEechHHHHHHHhcCCC-CCCCcEEEEeCCCcCCcC
Q 006122 105 RLAVQAVASRVAEEM---GVKVGEEVGYTIRFED-FTNKDLTAIKFLTDGVLLREMMDDPL-LTKYSVIMVDEAHERSIS 179 (660)
Q Consensus 105 ~la~~~~~~~~~~~~---~~~~~~~vg~~~~~~~-~~~~~~~~I~v~T~~~ll~~l~~~~~-l~~~~~iIiDE~Her~~~ 179 (660)
.|+.| +++.+.+.. +..++...|.....+. .... ..+|+|+||+.+.+.+..... +.++++||+||||. ..+
T Consensus 85 ~L~~q-~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~-~~~iiv~T~~~l~~~~~~~~~~~~~~~~iIiDEah~-~~~ 161 (367)
T 1hv8_A 85 ELAIQ-VADEIESLKGNKNLKIAKIYGGKAIYPQIKALK-NANIVVGTPGRILDHINRGTLNLKNVKYFILDEADE-MLN 161 (367)
T ss_dssp HHHHH-HHHHHHHHHCSSCCCEEEECTTSCHHHHHHHHH-TCSEEEECHHHHHHHHHTTCSCTTSCCEEEEETHHH-HHT
T ss_pred HHHHH-HHHHHHHHhCCCCceEEEEECCcchHHHHhhcC-CCCEEEecHHHHHHHHHcCCcccccCCEEEEeCchH-hhh
Confidence 87765 455555544 3344444442211111 1112 579999999999998876654 88999999999994 333
Q ss_pred hhHHHHHHHHHHHhcCCceEEEeecccchHH---HHHHhhcCCCCCCCcccccCCCCCCeEEEECCccccceEEecCCCc
Q 006122 180 TDILLGLLKKIQRCRSDLRLIISSATIEAKS---MSAFFHARKGRRGLEGVELVPRLEPAILSVEGRGFNVQIHYVEEPV 256 (660)
Q Consensus 180 ~d~ll~~l~~~~~~~~~~kii~~SAT~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~ 256 (660)
..+...+.+.+....++.++++||||++... +..+++... .+ ......+++..+.....
T Consensus 162 ~~~~~~~~~~~~~~~~~~~~i~~SAT~~~~~~~~~~~~~~~~~-----------------~~-~~~~~~~~~~~~~~~~~ 223 (367)
T 1hv8_A 162 MGFIKDVEKILNACNKDKRILLFSATMPREILNLAKKYMGDYS-----------------FI-KAKINANIEQSYVEVNE 223 (367)
T ss_dssp TTTHHHHHHHHHTSCSSCEEEEECSSCCHHHHHHHHHHCCSEE-----------------EE-ECCSSSSSEEEEEECCG
T ss_pred hchHHHHHHHHHhCCCCceEEEEeeccCHHHHHHHHHHcCCCe-----------------EE-EecCCCCceEEEEEeCh
Confidence 3444444444444567899999999996543 234443321 12 12222344555554444
Q ss_pred hhHHHHHHHHHHHHHhcCCCCcEEEEcCCHHHHHHHHHHHHHHhhhccCCCCCeEEEEccCCCCHHHHhhhcCCCCCCCc
Q 006122 257 SDYVQAAVSTVLLIHDKEPPGDILVFLTGQDDIDATIQLLTEEARTSKKNSSGLIILPLYSGLSRAEQEQVFSPTPRGKR 336 (660)
Q Consensus 257 ~~~~~~~~~~~~~~~~~~~~~~iLVF~~~~~~i~~l~~~L~~~~~~~~~~~~~~~v~~lh~~l~~~~r~~v~~~f~~g~~ 336 (660)
.+...... .+.. ..++++||||+++++++.+++.|.+. +..+..+||+++.++|.++++.|++|+.
T Consensus 224 ~~~~~~l~----~~l~-~~~~~~lvf~~~~~~~~~l~~~L~~~---------~~~~~~~~~~~~~~~r~~~~~~f~~~~~ 289 (367)
T 1hv8_A 224 NERFEALC----RLLK-NKEFYGLVFCKTKRDTKELASMLRDI---------GFKAGAIHGDLSQSQREKVIRLFKQKKI 289 (367)
T ss_dssp GGHHHHHH----HHHC-STTCCEEEECSSHHHHHHHHHHHHHT---------TCCEEEECSSSCHHHHHHHHHHHHTTSS
T ss_pred HHHHHHHH----HHHh-cCCCcEEEEECCHHHHHHHHHHHHhc---------CCCeEEeeCCCCHHHHHHHHHHHHcCCC
Confidence 44433332 2223 46778999999999999999999875 6789999999999999999999999999
Q ss_pred EEEEeCCCcccccCCCCeEEEEeCCCccceeecCCCCcccceeeecCHHhHHHhhcccCCC-CCcEEEEccChHHhhh
Q 006122 337 KVVISTNIAETSLTLEGIVYVVDSGFSKQRFYNPISDIENLVVAPISKASARQRAGRAGRV-RPGKCYRLYTEEYFVK 413 (660)
Q Consensus 337 ~vlvaT~i~e~Gidip~v~~VId~g~~k~~~~~~~~~~~~l~~~~~s~~~~~QR~GRaGR~-~~G~~~~l~~~~~~~~ 413 (660)
+|||||+++++|+|+|++++||+++. |.|..+|.||+|||||. ++|.|+.++++.++..
T Consensus 290 ~vlv~T~~~~~Gid~~~~~~Vi~~~~------------------~~s~~~~~Q~~GR~~R~g~~g~~~~~~~~~~~~~ 349 (367)
T 1hv8_A 290 RILIATDVMSRGIDVNDLNCVINYHL------------------PQNPESYMHRIGRTGRAGKKGKAISIINRREYKK 349 (367)
T ss_dssp SEEEECTTHHHHCCCSCCSEEEESSC------------------CSCHHHHHHHSTTTCCSSSCCEEEEEECTTSHHH
T ss_pred eEEEECChhhcCCCcccCCEEEEecC------------------CCCHHHhhhcccccccCCCccEEEEEEcHHHHHH
Confidence 99999999999999999999999877 88999999999999999 7999999999876544
No 13
>3fht_A ATP-dependent RNA helicase DDX19B; DBP5, DEAD-box helicase, RNA dependent ATPase, mRNA export, nucleocytoplasmic transport, NUP214, CAN; HET: ANP; 2.20A {Homo sapiens} PDB: 3ews_A* 3g0h_A* 3fhc_B
Probab=100.00 E-value=3.1e-38 Score=340.39 Aligned_cols=341 Identities=15% Similarity=0.139 Sum_probs=234.3
Q ss_pred cccCCCCCCCccchHhHHHHhcCCCcHHHHHHHHHHHhcC--CEEEEEcCCCCcHHHHHHHHHHhccc--cCCCeEEEEe
Q 006122 26 SSSLSSASSIGYGYASIEKQRQRLPVYKYRTAILYLVETH--ATTIIVGETGSGKTTQIPQYLKEAGW--ADGGRVIACT 101 (660)
Q Consensus 26 ~~~~~~~~~~~~~~~~~~~~~~~lPi~~~~~~i~~~l~~~--~~vii~apTGsGKT~~ip~~l~~~~~--~~~~~~i~v~ 101 (660)
..+|.+++++......+.+....-| +++|.+++..+.++ ++++++||||||||......+..... ..+.++++++
T Consensus 24 ~~~f~~~~l~~~l~~~l~~~g~~~~-~~~Q~~~i~~~~~~~~~~~lv~apTGsGKT~~~~~~~~~~~~~~~~~~~~lil~ 102 (412)
T 3fht_A 24 VKSFEELRLKPQLLQGVYAMGFNRP-SKIQENALPLMLAEPPQNLIAQSQSGTGKTAAFVLAMLSQVEPANKYPQCLCLS 102 (412)
T ss_dssp SSCTGGGTCCHHHHHHHHHTTCCSC-CHHHHHHHHHHHSSSCCCEEEECCTTSCHHHHHHHHHHHHCCTTSCSCCEEEEC
T ss_pred cCCHhhCCCCHHHHHHHHHcCCCCC-CHHHHHHHHHHhcCCCCeEEEECCCCchHHHHHHHHHHHHhhhcCCCCCEEEEC
Confidence 4579999999998888876554444 56666677777665 88999999999999654444433322 2334689999
Q ss_pred CchHHHHHHHHHHHHHHh----CCeeeeEEeeeeeccccCCCCCceEEEechHHHHHHHhcCCC--CCCCcEEEEeCCCc
Q 006122 102 QPRRLAVQAVASRVAEEM----GVKVGEEVGYTIRFEDFTNKDLTAIKFLTDGVLLREMMDDPL--LTKYSVIMVDEAHE 175 (660)
Q Consensus 102 p~r~la~~~~~~~~~~~~----~~~~~~~vg~~~~~~~~~~~~~~~I~v~T~~~ll~~l~~~~~--l~~~~~iIiDE~He 175 (660)
|+++|+.|. ++++.+.. +..++...|... ....... ..+|+|+||+.+.+.+..... +.++++||+||||.
T Consensus 103 P~~~L~~q~-~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~-~~~ivv~T~~~l~~~~~~~~~~~~~~~~~iViDEah~ 179 (412)
T 3fht_A 103 PTYELALQT-GKVIEQMGKFYPELKLAYAVRGNK-LERGQKI-SEQIVIGTPGTVLDWCSKLKFIDPKKIKVFVLDEADV 179 (412)
T ss_dssp SSHHHHHHH-HHHHHHHTTTSTTCCEEEECTTCC-CCTTCCC-CCSEEEECHHHHHHHHTTSCSSCGGGCCEEEEETHHH
T ss_pred CCHHHHHHH-HHHHHHHHhhcccceEEEeecCcc-hhhhhcC-CCCEEEECchHHHHHHHhcCCcChhhCcEEEEeCHHH
Confidence 999887763 33333332 233433333221 1112222 579999999999998866333 68999999999994
Q ss_pred CCcChhHHHHHHHHHHHhcCCceEEEeecccchH--HHHHHhhcCCCCCCCcccccCCCCCCeEEEECCc---cccceEE
Q 006122 176 RSISTDILLGLLKKIQRCRSDLRLIISSATIEAK--SMSAFFHARKGRRGLEGVELVPRLEPAILSVEGR---GFNVQIH 250 (660)
Q Consensus 176 r~~~~d~ll~~l~~~~~~~~~~kii~~SAT~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~v~~~ 250 (660)
......+...+........++.+++++|||++.. .+...+...+. .+.+... ...+...
T Consensus 180 ~~~~~~~~~~~~~~~~~~~~~~~~i~~SAT~~~~~~~~~~~~~~~~~----------------~~~~~~~~~~~~~~~~~ 243 (412)
T 3fht_A 180 MIATQGHQDQSIRIQRMLPRNCQMLLFSATFEDSVWKFAQKVVPDPN----------------VIKLKREEETLDTIKQY 243 (412)
T ss_dssp HHSTTTTHHHHHHHHHTSCTTCEEEEEESCCCHHHHHHHHHHSSSCE----------------EECCCGGGSSCTTEEEE
T ss_pred HhhcCCcHHHHHHHHhhCCCCceEEEEEeecCHHHHHHHHHhcCCCe----------------EEeeccccccccCceEE
Confidence 3322333333334444456788999999999553 33332222220 2222211 1223333
Q ss_pred ecCCCchhHHHHHHHHHHHHHhcCCCCcEEEEcCCHHHHHHHHHHHHHHhhhccCCCCCeEEEEccCCCCHHHHhhhcCC
Q 006122 251 YVEEPVSDYVQAAVSTVLLIHDKEPPGDILVFLTGQDDIDATIQLLTEEARTSKKNSSGLIILPLYSGLSRAEQEQVFSP 330 (660)
Q Consensus 251 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~iLVF~~~~~~i~~l~~~L~~~~~~~~~~~~~~~v~~lh~~l~~~~r~~v~~~ 330 (660)
+......+ .....+..+......+++||||+++++++.+++.|.+. +..+..+||+++.++|.++++.
T Consensus 244 ~~~~~~~~---~~~~~l~~~~~~~~~~~~lvf~~~~~~~~~l~~~L~~~---------~~~~~~~~~~~~~~~r~~~~~~ 311 (412)
T 3fht_A 244 YVLCSSRD---EKFQALCNLYGAITIAQAMIFCHTRKTASWLAAELSKE---------GHQVALLSGEMMVEQRAAVIER 311 (412)
T ss_dssp EEECSSHH---HHHHHHHHHHHHHSSSEEEEECSSHHHHHHHHHHHHHT---------TCCCEEECTTSCHHHHHHHHHH
T ss_pred EEEcCChH---HHHHHHHHHHhhcCCCCEEEEeCCHHHHHHHHHHHHhC---------CCeEEEecCCCCHHHHHHHHHH
Confidence 33333222 22333334444446678999999999999999999875 6789999999999999999999
Q ss_pred CCCCCcEEEEeCCCcccccCCCCeEEEEeCCCccceeecCCCCcccceeeecCHHhHHHhhcccCCC-CCcEEEEccChH
Q 006122 331 TPRGKRKVVISTNIAETSLTLEGIVYVVDSGFSKQRFYNPISDIENLVVAPISKASARQRAGRAGRV-RPGKCYRLYTEE 409 (660)
Q Consensus 331 f~~g~~~vlvaT~i~e~Gidip~v~~VId~g~~k~~~~~~~~~~~~l~~~~~s~~~~~QR~GRaGR~-~~G~~~~l~~~~ 409 (660)
|++|+.+|||||+++++|+|+|++++||+++...... .+.|..+|.||+|||||. ++|.|+.++++.
T Consensus 312 f~~g~~~vlv~T~~~~~Gidip~~~~Vi~~~~p~~~~------------~~~s~~~~~Qr~GR~gR~g~~g~~~~~~~~~ 379 (412)
T 3fht_A 312 FREGKEKVLVTTNVCARGIDVEQVSVVINFDLPVDKD------------GNPDNETYLHRIGRTGRFGKRGLAVNMVDSK 379 (412)
T ss_dssp HHTTSCSEEEECGGGTSSCCCTTEEEEEESSCCBCSS------------SSBCHHHHHHHHTTSSCTTCCEEEEEEECSH
T ss_pred HHCCCCcEEEEcCccccCCCccCCCEEEEECCCCCCC------------CCcchheeecccCcccCCCCCceEEEEEcCh
Confidence 9999999999999999999999999999977621110 026889999999999998 789999999865
Q ss_pred H
Q 006122 410 Y 410 (660)
Q Consensus 410 ~ 410 (660)
.
T Consensus 380 ~ 380 (412)
T 3fht_A 380 H 380 (412)
T ss_dssp H
T ss_pred h
Confidence 4
No 14
>3l9o_A ATP-dependent RNA helicase DOB1; REC-A fold, winged-helix-turn-helix, antiparallel-coiled-COI domain, ATP-binding, helicase, hydrolase; 3.39A {Saccharomyces cerevisiae}
Probab=100.00 E-value=9.1e-39 Score=378.48 Aligned_cols=351 Identities=16% Similarity=0.125 Sum_probs=252.2
Q ss_pred cccCCCCCCCccchHhHHHHhcCCCcHHHHHHHHHHHhcCCEEEEEcCCCCcHHHHHHHHHHhccccCCCeEEEEeCchH
Q 006122 26 SSSLSSASSIGYGYASIEKQRQRLPVYKYRTAILYLVETHATTIIVGETGSGKTTQIPQYLKEAGWADGGRVIACTQPRR 105 (660)
Q Consensus 26 ~~~~~~~~~~~~~~~~~~~~~~~lPi~~~~~~i~~~l~~~~~vii~apTGsGKT~~ip~~l~~~~~~~~~~~i~v~p~r~ 105 (660)
+.+|...|++......+ .....++++++|.+++.++..+++++++||||||||++....+... ...+++++|++|+|+
T Consensus 161 ~~~~~~~~l~~~~~~~~-~~~~~f~ltp~Q~~AI~~i~~g~dvLV~ApTGSGKTlva~l~i~~~-l~~g~rvlvl~Ptra 238 (1108)
T 3l9o_A 161 PPNYDYTPIAEHKRVNE-ARTYPFTLDPFQDTAISCIDRGESVLVSAHTSAGKTVVAEYAIAQS-LKNKQRVIYTSPIKA 238 (1108)
T ss_dssp SSCCCSSTTTTTCCCSC-SSCCSSCCCHHHHHHHHHHTTTCCEEEECCSSSHHHHHHHHHHHHH-HHTTCEEEEEESSHH
T ss_pred CCCcccCCCChhhhHHH-HHhCCCCCCHHHHHHHHHHHcCCCEEEECCCCCChHHHHHHHHHHH-HhcCCeEEEEcCcHH
Confidence 44566666666554443 4456678999999999999999999999999999997665555544 245677899999988
Q ss_pred HHHHHHHHHHHHHhCCeeeeEEeeeeeccccCCCCCceEEEechHHHHHHHhcCCC-CCCCcEEEEeCCCcCCcChhHHH
Q 006122 106 LAVQAVASRVAEEMGVKVGEEVGYTIRFEDFTNKDLTAIKFLTDGVLLREMMDDPL-LTKYSVIMVDEAHERSISTDILL 184 (660)
Q Consensus 106 la~~~~~~~~~~~~~~~~~~~vg~~~~~~~~~~~~~~~I~v~T~~~ll~~l~~~~~-l~~~~~iIiDE~Her~~~~d~ll 184 (660)
|+.| ..+++.+.++ .+|..+|. ..... .++|+|+||++|.+.+..+.. +.++++||||||| +..+.++..
T Consensus 239 La~Q-~~~~l~~~~~-~VglltGd-----~~~~~-~~~IlV~Tpe~L~~~L~~~~~~l~~l~lVVIDEaH-~l~d~~rg~ 309 (1108)
T 3l9o_A 239 LSNQ-KYRELLAEFG-DVGLMTGD-----ITINP-DAGCLVMTTEILRSMLYRGSEVMREVAWVIFDEVH-YMRDKERGV 309 (1108)
T ss_dssp HHHH-HHHHHHHHTS-SEEEECSS-----CBCCC-SCSEEEEEHHHHHHHHHHCSSHHHHEEEEEEETGG-GTTSHHHHH
T ss_pred HHHH-HHHHHHHHhC-CccEEeCc-----cccCC-CCCEEEeChHHHHHHHHcCccccccCCEEEEhhhh-hccccchHH
Confidence 8776 4555666666 55555552 22333 689999999999999887766 8899999999999 666665555
Q ss_pred HHHHHHHHhcCCceEEEeeccc-chHHHHHHhhcCCCCCCCcccccCCCCCCeEEEECCccccceEEecCCCch------
Q 006122 185 GLLKKIQRCRSDLRLIISSATI-EAKSMSAFFHARKGRRGLEGVELVPRLEPAILSVEGRGFNVQIHYVEEPVS------ 257 (660)
Q Consensus 185 ~~l~~~~~~~~~~kii~~SAT~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~------ 257 (660)
.+...+....++.++|+||||+ +...+.+|++..... ...++....+..|++.++......
T Consensus 310 ~~e~ii~~l~~~~qvl~lSATipn~~e~a~~l~~~~~~------------~~~vi~~~~rp~pl~~~~~~~~~~~~~~~v 377 (1108)
T 3l9o_A 310 VWEETIILLPDKVRYVFLSATIPNAMEFAEWICKIHSQ------------PCHIVYTNFRPTPLQHYLFPAHGDGIYLVV 377 (1108)
T ss_dssp HHHHHHHHSCTTSEEEEEECSCSSCHHHHHHHHHHTCS------------CEEEEEECCCSSCEEEEEEETTSSCCEEEE
T ss_pred HHHHHHHhcCCCceEEEEcCCCCCHHHHHHHHHhhcCC------------CeEEEecCCCcccceEEEeecCCcceeeee
Confidence 5555555667889999999999 777889988753210 122455555555555443211000
Q ss_pred ---------hHH------------------------------------HHHHHHHHHHHhcCCCCcEEEEcCCHHHHHHH
Q 006122 258 ---------DYV------------------------------------QAAVSTVLLIHDKEPPGDILVFLTGQDDIDAT 292 (660)
Q Consensus 258 ---------~~~------------------------------------~~~~~~~~~~~~~~~~~~iLVF~~~~~~i~~l 292 (660)
.+. ...+..++..+.....+++||||+++++++.+
T Consensus 378 d~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~li~~l~~~~~~~vIVF~~sr~~~e~l 457 (1108)
T 3l9o_A 378 DEKSTFREENFQKAMASISNQIGDDPNSTDSRGKKGQTYKGGSAKGDAKGDIYKIVKMIWKKKYNPVIVFSFSKRDCEEL 457 (1108)
T ss_dssp ETTTEECHHHHHHHHTTC-----------------------------CHHHHHHHHHHHHHTTCCCEEEEESCHHHHHHH
T ss_pred ccccchhhhhHHHHHHHHHhhhcccccccccccccccccccccccccchhHHHHHHHHHHhcCCCCEEEEeCcHHHHHHH
Confidence 000 22233344444555677999999999999999
Q ss_pred HHHHHHHhhhccC---------------------CC---------CCeEEEEccCCCCHHHHhhhcCCCCCCCcEEEEeC
Q 006122 293 IQLLTEEARTSKK---------------------NS---------SGLIILPLYSGLSRAEQEQVFSPTPRGKRKVVIST 342 (660)
Q Consensus 293 ~~~L~~~~~~~~~---------------------~~---------~~~~v~~lh~~l~~~~r~~v~~~f~~g~~~vlvaT 342 (660)
+..|......... .. ....|.++||+|++.+|..+++.|++|.++|||||
T Consensus 458 a~~L~~~~~~~~~e~~~i~~~~~~~~~~l~~~d~~l~~~~~l~~~l~~gV~~~Hg~l~~~~R~~v~~~F~~G~ikVLVAT 537 (1108)
T 3l9o_A 458 ALKMSKLDFNSDDEKEALTKIFNNAIALLPETDRELPQIKHILPLLRRGIGIHHSGLLPILKEVIEILFQEGFLKVLFAT 537 (1108)
T ss_dssp HHHTCSHHHHCC----CHHHHGGGSCTHHHHHTTCCHHHHHHTHHHHHTEEEECSCSCHHHHHHHHHHHHHTCCCEEEEE
T ss_pred HHHHHhccCCCHHHHHHHHHHHHHHHhhcchhhhhhhhHHHHHHhhhcCeeeecCCCCHHHHHHHHHHHhCCCCeEEEEC
Confidence 9988653111000 00 01128999999999999999999999999999999
Q ss_pred CCcccccCCCCeEEEEeCCCccceeecCCCCcccceeeecCHHhHHHhhcccCCCC---CcEEEEccChH
Q 006122 343 NIAETSLTLEGIVYVVDSGFSKQRFYNPISDIENLVVAPISKASARQRAGRAGRVR---PGKCYRLYTEE 409 (660)
Q Consensus 343 ~i~e~Gidip~v~~VId~g~~k~~~~~~~~~~~~l~~~~~s~~~~~QR~GRaGR~~---~G~~~~l~~~~ 409 (660)
+++++|||+|++++||+++. .||.. . ..|+|..+|.||+|||||.+ .|.||.++++.
T Consensus 538 ~vla~GIDiP~v~~VI~~~~----~~d~~----~--~r~iS~~eyiQr~GRAGR~G~d~~G~~ill~~~~ 597 (1108)
T 3l9o_A 538 ETFSIGLNMPAKTVVFTSVR----KWDGQ----Q--FRWVSGGEYIQMSGRAGRRGLDDRGIVIMMIDEK 597 (1108)
T ss_dssp SCCCSCCCC--CEEEESCSE----EESSS----C--EEECCHHHHHHHHHHSCCSSSCSSEEEEEEECCC
T ss_pred cHHhcCCCCCCceEEEecCc----ccCcc----c--cccCCHHHHHHhhcccCCCCCCCceEEEEEecCC
Confidence 99999999999999998554 23332 2 23899999999999999985 89999999864
No 15
>1xti_A Probable ATP-dependent RNA helicase P47; alpha-beta fold, gene regulation; 1.95A {Homo sapiens} SCOP: c.37.1.19 c.37.1.19 PDB: 1xtj_A* 1xtk_A
Probab=100.00 E-value=1e-37 Score=333.97 Aligned_cols=339 Identities=17% Similarity=0.164 Sum_probs=238.7
Q ss_pred cccccccCCCCCCCccchHhHHHHhcCCCcHHHHHHHHHHHhcCCEEEEEcCCCCcHHHHHHHHHHhc--cccCCCeEEE
Q 006122 22 VVFLSSSLSSASSIGYGYASIEKQRQRLPVYKYRTAILYLVETHATTIIVGETGSGKTTQIPQYLKEA--GWADGGRVIA 99 (660)
Q Consensus 22 ~~~~~~~~~~~~~~~~~~~~~~~~~~~lPi~~~~~~i~~~l~~~~~vii~apTGsGKT~~ip~~l~~~--~~~~~~~~i~ 99 (660)
++..+++|.+++++......+.+. ..-..+++|.+++..+..++++++.+|||+|||......+... ....+.++++
T Consensus 3 ~~~~~~~f~~~~l~~~l~~~l~~~-g~~~~~~~Q~~~i~~~~~~~~~lv~a~TGsGKT~~~~~~~~~~l~~~~~~~~~li 81 (391)
T 1xti_A 3 PGHMSSGFRDFLLKPELLRAIVDC-GFEHPSEVQHECIPQAILGMDVLCQAKSGMGKTAVFVLATLQQLEPVTGQVSVLV 81 (391)
T ss_dssp ------CGGGGCCCHHHHHHHHHH-SCCSCCHHHHHHHHHHTTTCCEEEECSSCSSHHHHHHHHHHHHCCCCTTCCCEEE
T ss_pred CCCCCCChhhcCCCHHHHHHHHHC-CCCCCCHHHHHHHHHHhcCCcEEEECCCCCcHHHHHHHHHHHhhcccCCCeeEEE
Confidence 344567799999999888777554 3334788899999999999999999999999995443333332 1223457889
Q ss_pred EeCchHHHHHHHHHHHHHHh----CCeeeeEEeeeeeccc--cCCCCCceEEEechHHHHHHHhcCCC-CCCCcEEEEeC
Q 006122 100 CTQPRRLAVQAVASRVAEEM----GVKVGEEVGYTIRFED--FTNKDLTAIKFLTDGVLLREMMDDPL-LTKYSVIMVDE 172 (660)
Q Consensus 100 v~p~r~la~~~~~~~~~~~~----~~~~~~~vg~~~~~~~--~~~~~~~~I~v~T~~~ll~~l~~~~~-l~~~~~iIiDE 172 (660)
++|++.|+.|. .+.+.+.. +..++...|.....+. ......++|+|+||+.+.+.+..... +.++++||+||
T Consensus 82 l~P~~~L~~q~-~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~iiv~T~~~l~~~~~~~~~~~~~~~~vViDE 160 (391)
T 1xti_A 82 MCHTRELAFQI-SKEYERFSKYMPNVKVAVFFGGLSIKKDEEVLKKNCPHIVVGTPGRILALARNKSLNLKHIKHFILDE 160 (391)
T ss_dssp ECSCHHHHHHH-HHHHHHHTTTCTTCCEEEECTTSCHHHHHHHHHHSCCSEEEECHHHHHHHHHTTSSCCTTCSEEEECS
T ss_pred ECCCHHHHHHH-HHHHHHHHhhCCCeEEEEEeCCCCHHHHHHHHhcCCCCEEEECHHHHHHHHHcCCccccccCEEEEeC
Confidence 99998887764 34344332 5556555552211000 00111469999999999998876654 89999999999
Q ss_pred CCcCCcChhHHHHHHHHHHHhcCCceEEEeecccch--HHH-HHHhhcCCCCCCCcccccCCCCCCeEEEECCc----cc
Q 006122 173 AHERSISTDILLGLLKKIQRCRSDLRLIISSATIEA--KSM-SAFFHARKGRRGLEGVELVPRLEPAILSVEGR----GF 245 (660)
Q Consensus 173 ~Her~~~~d~ll~~l~~~~~~~~~~kii~~SAT~~~--~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~ 245 (660)
||...-..++...+.+.+....++.+++++|||++. ..+ ..++.... .+.+... ..
T Consensus 161 aH~~~~~~~~~~~~~~~~~~~~~~~~~i~~SAT~~~~~~~~~~~~~~~~~-----------------~~~~~~~~~~~~~ 223 (391)
T 1xti_A 161 CDKMLEQLDMRRDVQEIFRMTPHEKQVMMFSATLSKEIRPVCRKFMQDPM-----------------EIFVDDETKLTLH 223 (391)
T ss_dssp HHHHTSSHHHHHHHHHHHHTSCSSSEEEEEESSCCSTHHHHHHHHCSSCE-----------------EEECCCCCCCCCT
T ss_pred HHHHhhccchHHHHHHHHhhCCCCceEEEEEeeCCHHHHHHHHHHcCCCe-----------------EEEecCccccCcc
Confidence 995433345554444444445568999999999943 233 33443221 1221111 12
Q ss_pred cceEEecCCCchhHHHHHHHHHHHHHhcCCCCcEEEEcCCHHHHHHHHHHHHHHhhhccCCCCCeEEEEccCCCCHHHHh
Q 006122 246 NVQIHYVEEPVSDYVQAAVSTVLLIHDKEPPGDILVFLTGQDDIDATIQLLTEEARTSKKNSSGLIILPLYSGLSRAEQE 325 (660)
Q Consensus 246 ~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iLVF~~~~~~i~~l~~~L~~~~~~~~~~~~~~~v~~lh~~l~~~~r~ 325 (660)
.+..++......+.... +..+......+++||||+++++++.+++.|.+. ++.+..+||+++.++|.
T Consensus 224 ~~~~~~~~~~~~~~~~~----l~~~l~~~~~~~~lvf~~~~~~~~~l~~~L~~~---------~~~~~~~~~~~~~~~r~ 290 (391)
T 1xti_A 224 GLQQYYVKLKDNEKNRK----LFDLLDVLEFNQVVIFVKSVQRCIALAQLLVEQ---------NFPAIAIHRGMPQEERL 290 (391)
T ss_dssp TCEEEEEECCGGGHHHH----HHHHHHHSCCSEEEEECSCHHHHHHHHHHHHHT---------TCCEEEECTTSCHHHHH
T ss_pred cceEEEEEcCchhHHHH----HHHHHHhcCCCcEEEEeCcHHHHHHHHHHHHhC---------CCcEEEEeCCCCHHHHH
Confidence 23333433333333222 223333446788999999999999999999875 67899999999999999
Q ss_pred hhcCCCCCCCcEEEEeCCCcccccCCCCeEEEEeCCCccceeecCCCCcccceeeecCHHhHHHhhcccCCC-CCcEEEE
Q 006122 326 QVFSPTPRGKRKVVISTNIAETSLTLEGIVYVVDSGFSKQRFYNPISDIENLVVAPISKASARQRAGRAGRV-RPGKCYR 404 (660)
Q Consensus 326 ~v~~~f~~g~~~vlvaT~i~e~Gidip~v~~VId~g~~k~~~~~~~~~~~~l~~~~~s~~~~~QR~GRaGR~-~~G~~~~ 404 (660)
.+++.|++|+.+|||||+++++|+|+|++++||+++. |.|..+|.||+|||||. ++|.|+.
T Consensus 291 ~~~~~f~~~~~~vlv~T~~~~~Gidi~~~~~Vi~~~~------------------p~s~~~~~Qr~GR~~R~g~~g~~~~ 352 (391)
T 1xti_A 291 SRYQQFKDFQRRILVATNLFGRGMDIERVNIAFNYDM------------------PEDSDTYLHRVARAGRFGTKGLAIT 352 (391)
T ss_dssp HHHHHHHTTCCSEEEESCCCSSCBCCTTEEEEEESSC------------------CSSHHHHHHHHCBCSSSCCCCEEEE
T ss_pred HHHHHHhcCCCcEEEECChhhcCCCcccCCEEEEeCC------------------CCCHHHHHHhcccccCCCCceEEEE
Confidence 9999999999999999999999999999999999877 78999999999999998 8999999
Q ss_pred ccChHH
Q 006122 405 LYTEEY 410 (660)
Q Consensus 405 l~~~~~ 410 (660)
++++..
T Consensus 353 ~~~~~~ 358 (391)
T 1xti_A 353 FVSDEN 358 (391)
T ss_dssp EECSHH
T ss_pred EEcccc
Confidence 998653
No 16
>2v1x_A ATP-dependent DNA helicase Q1; DNA strand annealing, mismatch repair, nucleotide-binding, DNA-binding, polymorphism, nuclear protein, ATPase; HET: ADP; 2.00A {Homo sapiens} PDB: 2wwy_A*
Probab=100.00 E-value=3.2e-38 Score=352.33 Aligned_cols=332 Identities=14% Similarity=0.122 Sum_probs=232.7
Q ss_pred CCCCCCCccchHhHHHHhcCCCcHHHHHHHHHHHhcCCEEEEEcCCCCcHH--HHHHHHHHhccccCCCeEEEEeCchHH
Q 006122 29 LSSASSIGYGYASIEKQRQRLPVYKYRTAILYLVETHATTIIVGETGSGKT--TQIPQYLKEAGWADGGRVIACTQPRRL 106 (660)
Q Consensus 29 ~~~~~~~~~~~~~~~~~~~~lPi~~~~~~i~~~l~~~~~vii~apTGsGKT--~~ip~~l~~~~~~~~~~~i~v~p~r~l 106 (660)
+.++|++......+.+.-.--...+.|.++++++.+++++++.+|||+||| +++|.+. ..+.+|+++|+++|
T Consensus 23 ~~~~~l~~~l~~~L~~~fg~~~~rp~Q~~~i~~il~g~d~lv~~pTGsGKTl~~~lpal~------~~g~~lVisP~~~L 96 (591)
T 2v1x_A 23 KEDFPWSGKVKDILQNVFKLEKFRPLQLETINVTMAGKEVFLVMPTGGGKSLCYQLPALC------SDGFTLVICPLISL 96 (591)
T ss_dssp CSCSTTHHHHHHHHHHTSCCCSCCTTHHHHHHHHHTTCCEEEECCTTSCTTHHHHHHHHT------SSSEEEEECSCHHH
T ss_pred cccCCCCHHHHHHHHHHhCCCCCCHHHHHHHHHHHcCCCEEEEECCCChHHHHHHHHHHH------cCCcEEEEeCHHHH
Confidence 445777776665554432223456788999999999999999999999999 5677643 24578999999999
Q ss_pred HHHHHHHHHHHHhCCeeeeEEeeeeecccc--------CCCCCceEEEechHHHH------HHHhcCCCCCCCcEEEEeC
Q 006122 107 AVQAVASRVAEEMGVKVGEEVGYTIRFEDF--------TNKDLTAIKFLTDGVLL------REMMDDPLLTKYSVIMVDE 172 (660)
Q Consensus 107 a~~~~~~~~~~~~~~~~~~~vg~~~~~~~~--------~~~~~~~I~v~T~~~ll------~~l~~~~~l~~~~~iIiDE 172 (660)
+.+++.. +. ..|..++...|.....+.. ... ..+|+|+||++|. +.+.....+.++++|||||
T Consensus 97 ~~q~~~~-l~-~~gi~~~~l~~~~~~~~~~~~~~~l~~~~~-~~~Ilv~Tpe~L~~~~~~~~~l~~~~~~~~i~~iViDE 173 (591)
T 2v1x_A 97 MEDQLMV-LK-QLGISATMLNASSSKEHVKWVHAEMVNKNS-ELKLIYVTPEKIAKSKMFMSRLEKAYEARRFTRIAVDE 173 (591)
T ss_dssp HHHHHHH-HH-HHTCCEEECCSSCCHHHHHHHHHHHHCTTC-CCCEEEECHHHHHSCHHHHHHHHHHHHTTCEEEEEEET
T ss_pred HHHHHHH-HH-hcCCcEEEEeCCCCHHHHHHHHHHhhcccC-CCCEEEEChhHhhccHHHHHHHHhhhhccCCcEEEEEC
Confidence 8876544 33 3477665555533221110 123 6899999999874 2233222367899999999
Q ss_pred CCcCCcC-hhHHH--HHHHHHHHhcCCceEEEeecccchH---HHHHHhhcCCCCCCCcccccCCCCCCeEEEECCcccc
Q 006122 173 AHERSIS-TDILL--GLLKKIQRCRSDLRLIISSATIEAK---SMSAFFHARKGRRGLEGVELVPRLEPAILSVEGRGFN 246 (660)
Q Consensus 173 ~Her~~~-~d~ll--~~l~~~~~~~~~~kii~~SAT~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 246 (660)
||+.+-. .|+.. ..+..+....++.++|++|||++.. .+.++++... + .....+...
T Consensus 174 AH~is~~g~dfr~~~~~l~~l~~~~~~~~ii~lSAT~~~~v~~~i~~~l~~~~---------------~-~~~~~~~~r- 236 (591)
T 2v1x_A 174 VHCCSQWGHDFRPDYKALGILKRQFPNASLIGLTATATNHVLTDAQKILCIEK---------------C-FTFTASFNR- 236 (591)
T ss_dssp GGGGSTTCTTCCGGGGGGGHHHHHCTTSEEEEEESSCCHHHHHHHHHHTTCCS---------------C-EEEECCCCC-
T ss_pred cccccccccccHHHHHHHHHHHHhCCCCcEEEEecCCCHHHHHHHHHHhCCCC---------------c-EEEecCCCC-
Confidence 9964421 11211 1123444566789999999999664 3445554321 0 111111111
Q ss_pred ceEEecCCCchhHHHHHHHHHHHHHhc-CCCCcEEEEcCCHHHHHHHHHHHHHHhhhccCCCCCeEEEEccCCCCHHHHh
Q 006122 247 VQIHYVEEPVSDYVQAAVSTVLLIHDK-EPPGDILVFLTGQDDIDATIQLLTEEARTSKKNSSGLIILPLYSGLSRAEQE 325 (660)
Q Consensus 247 v~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~iLVF~~~~~~i~~l~~~L~~~~~~~~~~~~~~~v~~lh~~l~~~~r~ 325 (660)
..++|............+..+..+... ..++++||||+++++++.+++.|.+. ++.+..+||+|++++|.
T Consensus 237 ~nl~~~v~~~~~~~~~~~~~l~~~l~~~~~~~~~IVf~~sr~~~e~la~~L~~~---------g~~~~~~h~~l~~~~R~ 307 (591)
T 2v1x_A 237 PNLYYEVRQKPSNTEDFIEDIVKLINGRYKGQSGIIYCFSQKDSEQVTVSLQNL---------GIHAGAYHANLEPEDKT 307 (591)
T ss_dssp TTEEEEEEECCSSHHHHHHHHHHHHTTTTTTCEEEEECSSHHHHHHHHHHHHHT---------TCCEEEECTTSCHHHHH
T ss_pred cccEEEEEeCCCcHHHHHHHHHHHHHHhccCCCeEEEeCcHHHHHHHHHHHHHC---------CCCEEEecCCCCHHHHH
Confidence 111221111111122233444444432 35678999999999999999999875 78899999999999999
Q ss_pred hhcCCCCCCCcEEEEeCCCcccccCCCCeEEEEeCCCccceeecCCCCcccceeeecCHHhHHHhhcccCCC-CCcEEEE
Q 006122 326 QVFSPTPRGKRKVVISTNIAETSLTLEGIVYVVDSGFSKQRFYNPISDIENLVVAPISKASARQRAGRAGRV-RPGKCYR 404 (660)
Q Consensus 326 ~v~~~f~~g~~~vlvaT~i~e~Gidip~v~~VId~g~~k~~~~~~~~~~~~l~~~~~s~~~~~QR~GRaGR~-~~G~~~~ 404 (660)
++++.|++|+.+|||||+++++|||+|+|++||++++ |.|..+|.||+|||||. .+|.|+.
T Consensus 308 ~~~~~F~~g~~~VlVAT~a~~~GID~p~V~~VI~~~~------------------p~s~~~y~Qr~GRaGR~G~~g~~i~ 369 (591)
T 2v1x_A 308 TVHRKWSANEIQVVVATVAFGMGIDKPDVRFVIHHSM------------------SKSMENYYQESGRAGRDDMKADCIL 369 (591)
T ss_dssp HHHHHHHTTSSSEEEECTTSCTTCCCSCEEEEEESSC------------------CSSHHHHHHHHTTSCTTSSCEEEEE
T ss_pred HHHHHHHcCCCeEEEEechhhcCCCcccccEEEEeCC------------------CCCHHHHHHHhccCCcCCCCceEEE
Confidence 9999999999999999999999999999999999888 88999999999999999 7999999
Q ss_pred ccChHHhhh
Q 006122 405 LYTEEYFVK 413 (660)
Q Consensus 405 l~~~~~~~~ 413 (660)
+|++.+...
T Consensus 370 l~~~~D~~~ 378 (591)
T 2v1x_A 370 YYGFGDIFR 378 (591)
T ss_dssp EECHHHHHH
T ss_pred EEChHHHHH
Confidence 999887654
No 17
>2i4i_A ATP-dependent RNA helicase DDX3X; DEAD, structural genomics, SGC, structural GE consortium, hydrolase; HET: AMP; 2.20A {Homo sapiens}
Probab=100.00 E-value=2.6e-38 Score=341.72 Aligned_cols=335 Identities=19% Similarity=0.207 Sum_probs=232.7
Q ss_pred ccCCCCCCCccchHhHHHHhcCCCcHHHHHHHHHHHhcCCEEEEEcCCCCcHHH--HHHHHHHhc--c------------
Q 006122 27 SSLSSASSIGYGYASIEKQRQRLPVYKYRTAILYLVETHATTIIVGETGSGKTT--QIPQYLKEA--G------------ 90 (660)
Q Consensus 27 ~~~~~~~~~~~~~~~~~~~~~~lPi~~~~~~i~~~l~~~~~vii~apTGsGKT~--~ip~~l~~~--~------------ 90 (660)
.+|.+++++......+...... ..++.|.+++.++.++++++++||||||||. ++|.+.... .
T Consensus 15 ~~f~~~~l~~~l~~~l~~~~~~-~~~~~Q~~~i~~i~~~~~~lv~a~TGsGKT~~~~~~~l~~~~~~~~~~~~~~~~~~~ 93 (417)
T 2i4i_A 15 ESFSDVEMGEIIMGNIELTRYT-RPTPVQKHAIPIIKEKRDLMACAQTGSGKTAAFLLPILSQIYSDGPGEALRAMKENG 93 (417)
T ss_dssp SSGGGSCCCHHHHHHHHHHTCC-SCCHHHHHHHHHHHTTCCEEEECCTTSCHHHHHHHHHHHHHHHHCCCHHHHHHHHCB
T ss_pred CCHhhCCCCHHHHHHHHHCCCC-CCCHHHHHHHHHHccCCCEEEEcCCCCHHHHHHHHHHHHHHHhccccchhhcccccc
Confidence 3599999998888777654443 4566777778888899999999999999994 455432211 1
Q ss_pred ----ccCCCeEEEEeCchHHHHHHHH--HHHHHHhCCeeeeEEeeeeeccc--cCCCCCceEEEechHHHHHHHhcCCC-
Q 006122 91 ----WADGGRVIACTQPRRLAVQAVA--SRVAEEMGVKVGEEVGYTIRFED--FTNKDLTAIKFLTDGVLLREMMDDPL- 161 (660)
Q Consensus 91 ----~~~~~~~i~v~p~r~la~~~~~--~~~~~~~~~~~~~~vg~~~~~~~--~~~~~~~~I~v~T~~~ll~~l~~~~~- 161 (660)
...+.++++++|+|+|+.|... +.+....+..++...|.....+. .... .++|+|+||+.|.+.+..+..
T Consensus 94 ~~~~~~~~~~~lil~Pt~~L~~q~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~-~~~I~v~Tp~~l~~~l~~~~~~ 172 (417)
T 2i4i_A 94 RYGRRKQYPISLVLAPTRELAVQIYEEARKFSYRSRVRPCVVYGGADIGQQIRDLER-GCHLLVATPGRLVDMMERGKIG 172 (417)
T ss_dssp TTBSCSBCCSEEEECSSHHHHHHHHHHHHHHHTTSSCCEEEECSSSCHHHHHHHHTT-CCSEEEECHHHHHHHHHTTSBC
T ss_pred ccccccCCccEEEECCcHHHHHHHHHHHHHHhCcCCceEEEEECCCCHHHHHHHhhC-CCCEEEEChHHHHHHHHcCCcC
Confidence 0112468999999999887432 22333345566555553211111 1122 589999999999999877654
Q ss_pred CCCCcEEEEeCCCcCCcChhHHHHHHHHHHHh-----cCCceEEEeecccch--HHHH-HHhhcCCCCCCCcccccCCCC
Q 006122 162 LTKYSVIMVDEAHERSISTDILLGLLKKIQRC-----RSDLRLIISSATIEA--KSMS-AFFHARKGRRGLEGVELVPRL 233 (660)
Q Consensus 162 l~~~~~iIiDE~Her~~~~d~ll~~l~~~~~~-----~~~~kii~~SAT~~~--~~~~-~~~~~~~~~~~~~~~~~~~~~ 233 (660)
+.++++||+||||. ..+.++. ..++.+... ....+++++|||++. ..+. .++....
T Consensus 173 ~~~~~~iViDEah~-~~~~~~~-~~~~~i~~~~~~~~~~~~~~i~~SAT~~~~~~~~~~~~~~~~~-------------- 236 (417)
T 2i4i_A 173 LDFCKYLVLDEADR-MLDMGFE-PQIRRIVEQDTMPPKGVRHTMMFSATFPKEIQMLARDFLDEYI-------------- 236 (417)
T ss_dssp CTTCCEEEESSHHH-HHHTTCH-HHHHHHHTSSSCCCBTTBEEEEEESCCCHHHHHHHHHHCSSCE--------------
T ss_pred hhhCcEEEEEChhH-hhccCcH-HHHHHHHHhccCCCcCCcEEEEEEEeCCHHHHHHHHHHcCCCE--------------
Confidence 88999999999993 3222222 223333331 126789999999954 3333 3333211
Q ss_pred CCeEEEECC---ccccceEEecCCCchhHHHHHHHHHHHHHhc-CCCCcEEEEcCCHHHHHHHHHHHHHHhhhccCCCCC
Q 006122 234 EPAILSVEG---RGFNVQIHYVEEPVSDYVQAAVSTVLLIHDK-EPPGDILVFLTGQDDIDATIQLLTEEARTSKKNSSG 309 (660)
Q Consensus 234 ~~~~~~~~~---~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~iLVF~~~~~~i~~l~~~L~~~~~~~~~~~~~ 309 (660)
.+.+.. ....+...+......+... .+..+... ..++++||||+++++++.+++.|.+. +
T Consensus 237 ---~~~~~~~~~~~~~i~~~~~~~~~~~~~~----~l~~~l~~~~~~~~~lVf~~~~~~~~~l~~~L~~~---------~ 300 (417)
T 2i4i_A 237 ---FLAVGRVGSTSENITQKVVWVEESDKRS----FLLDLLNATGKDSLTLVFVETKKGADSLEDFLYHE---------G 300 (417)
T ss_dssp ---EEEEC----CCSSEEEEEEECCGGGHHH----HHHHHHHTCCTTCEEEEECSSHHHHHHHHHHHHHT---------T
T ss_pred ---EEEeCCCCCCccCceEEEEEeccHhHHH----HHHHHHHhcCCCCeEEEEECCHHHHHHHHHHHHHC---------C
Confidence 222211 1112233333332233222 22233333 35678999999999999999999875 7
Q ss_pred eEEEEccCCCCHHHHhhhcCCCCCCCcEEEEeCCCcccccCCCCeEEEEeCCCccceeecCCCCcccceeeecCHHhHHH
Q 006122 310 LIILPLYSGLSRAEQEQVFSPTPRGKRKVVISTNIAETSLTLEGIVYVVDSGFSKQRFYNPISDIENLVVAPISKASARQ 389 (660)
Q Consensus 310 ~~v~~lh~~l~~~~r~~v~~~f~~g~~~vlvaT~i~e~Gidip~v~~VId~g~~k~~~~~~~~~~~~l~~~~~s~~~~~Q 389 (660)
+.+..+||+++.++|.++++.|++|+.+|||||+++++|+|+|++++||+++. |.|..+|.|
T Consensus 301 ~~~~~~h~~~~~~~r~~~~~~f~~g~~~vlvaT~~~~~Gidip~v~~Vi~~~~------------------p~s~~~~~Q 362 (417)
T 2i4i_A 301 YACTSIHGDRSQRDREEALHQFRSGKSPILVATAVAARGLDISNVKHVINFDL------------------PSDIEEYVH 362 (417)
T ss_dssp CCEEEECTTSCHHHHHHHHHHHHHTSSCEEEECHHHHTTSCCCCEEEEEESSC------------------CSSHHHHHH
T ss_pred CCeeEecCCCCHHHHHHHHHHHHcCCCCEEEECChhhcCCCcccCCEEEEEcC------------------CCCHHHHHH
Confidence 78999999999999999999999999999999999999999999999999877 789999999
Q ss_pred hhcccCCC-CCcEEEEccChHHhhh
Q 006122 390 RAGRAGRV-RPGKCYRLYTEEYFVK 413 (660)
Q Consensus 390 R~GRaGR~-~~G~~~~l~~~~~~~~ 413 (660)
|+||+||. ++|.|+.++++.+...
T Consensus 363 r~GR~gR~g~~g~~~~~~~~~~~~~ 387 (417)
T 2i4i_A 363 RIGRTGRVGNLGLATSFFNERNINI 387 (417)
T ss_dssp HHTTBCC--CCEEEEEEECGGGGGG
T ss_pred hcCccccCCCCceEEEEEccccHHH
Confidence 99999999 7899999999876543
No 18
>2j0s_A ATP-dependent RNA helicase DDX48; mRNA processing, phosphorylation, rRNA processing, mRNA splicing, mRNA transport; HET: ANP; 2.21A {Homo sapiens} SCOP: c.37.1.19 c.37.1.19 PDB: 2j0q_A* 2hyi_C* 3ex7_C* 2xb2_A* 2hxy_A 2j0u_A 2j0u_B 2zu6_A
Probab=100.00 E-value=1.1e-38 Score=344.10 Aligned_cols=339 Identities=15% Similarity=0.174 Sum_probs=238.3
Q ss_pred ccCCCCCCCccchHhHHHHhcCCCcHHHHHHHHHHHhcCCEEEEEcCCCCcHHHHHHHHHHhccc--cCCCeEEEEeCch
Q 006122 27 SSLSSASSIGYGYASIEKQRQRLPVYKYRTAILYLVETHATTIIVGETGSGKTTQIPQYLKEAGW--ADGGRVIACTQPR 104 (660)
Q Consensus 27 ~~~~~~~~~~~~~~~~~~~~~~lPi~~~~~~i~~~l~~~~~vii~apTGsGKT~~ip~~l~~~~~--~~~~~~i~v~p~r 104 (660)
.+|.+++++......+.+.... ..+++|.+++..+.+++++++++|||||||......+..... ..+.++++++|++
T Consensus 37 ~~f~~~~l~~~l~~~l~~~g~~-~~~~~Q~~ai~~i~~~~~~lv~a~TGsGKT~~~~~~~~~~l~~~~~~~~~lil~Pt~ 115 (410)
T 2j0s_A 37 PTFDTMGLREDLLRGIYAYGFE-KPSAIQQRAIKQIIKGRDVIAQSQSGTGKTATFSISVLQCLDIQVRETQALILAPTR 115 (410)
T ss_dssp CSGGGGCCCHHHHHHHHHHTCC-SCCHHHHHHHHHHHTTCCEEEECCTTSSHHHHHHHHHHHTCCTTSCSCCEEEECSSH
T ss_pred CCHhhcCCCHHHHHHHHHcCCC-CCCHHHHHHHHHHhCCCCEEEECCCCCCchHHHHHHHHHHHhhccCCceEEEEcCcH
Confidence 4699999999888877665433 356778888888888899999999999999555444444322 2456789999999
Q ss_pred HHHHHHHH--HHHHHHhCCeeeeEEeeeeeccc--cCCCCCceEEEechHHHHHHHhcCCC-CCCCcEEEEeCCCcCCcC
Q 006122 105 RLAVQAVA--SRVAEEMGVKVGEEVGYTIRFED--FTNKDLTAIKFLTDGVLLREMMDDPL-LTKYSVIMVDEAHERSIS 179 (660)
Q Consensus 105 ~la~~~~~--~~~~~~~~~~~~~~vg~~~~~~~--~~~~~~~~I~v~T~~~ll~~l~~~~~-l~~~~~iIiDE~Her~~~ 179 (660)
+|+.|... +.+....+..++...|.....+. .... ..+|+|+||+.+.+.+..... +.++++||+||||+ ..+
T Consensus 116 ~L~~q~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~-~~~ivv~Tp~~l~~~l~~~~~~~~~~~~vViDEah~-~~~ 193 (410)
T 2j0s_A 116 ELAVQIQKGLLALGDYMNVQCHACIGGTNVGEDIRKLDY-GQHVVAGTPGRVFDMIRRRSLRTRAIKMLVLDEADE-MLN 193 (410)
T ss_dssp HHHHHHHHHHHHHTTTTTCCEEEECTTSCHHHHHHHHHH-CCSEEEECHHHHHHHHHTTSSCCTTCCEEEEETHHH-HTS
T ss_pred HHHHHHHHHHHHHhccCCeEEEEEECCCCHHHHHHHhhc-CCCEEEcCHHHHHHHHHhCCccHhheeEEEEccHHH-HHh
Confidence 88876332 22333345555555553211111 1112 478999999999998876544 88899999999994 444
Q ss_pred hhHHHHHHHHHHHhcCCceEEEeecccchHHHHHHhhcCCCCCCCcccccCCCCCCeEEEECCc---cccceEEecCCCc
Q 006122 180 TDILLGLLKKIQRCRSDLRLIISSATIEAKSMSAFFHARKGRRGLEGVELVPRLEPAILSVEGR---GFNVQIHYVEEPV 256 (660)
Q Consensus 180 ~d~ll~~l~~~~~~~~~~kii~~SAT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~v~~~~~~~~~ 256 (660)
.++...+.+.+....++.+++++|||++.+. .++...... .+..+.+... ...+...+.....
T Consensus 194 ~~~~~~~~~i~~~~~~~~~~i~~SAT~~~~~-~~~~~~~~~-------------~~~~~~~~~~~~~~~~~~~~~~~~~~ 259 (410)
T 2j0s_A 194 KGFKEQIYDVYRYLPPATQVVLISATLPHEI-LEMTNKFMT-------------DPIRILVKRDELTLEGIKQFFVAVER 259 (410)
T ss_dssp TTTHHHHHHHHTTSCTTCEEEEEESCCCHHH-HTTGGGTCS-------------SCEEECCCGGGCSCTTEEEEEEEESS
T ss_pred hhhHHHHHHHHHhCccCceEEEEEcCCCHHH-HHHHHHHcC-------------CCEEEEecCccccCCCceEEEEEeCc
Confidence 4444444444444557899999999996542 222211110 0001111111 1122333332222
Q ss_pred hhHHHHHHHHHHHHHhcCCCCcEEEEcCCHHHHHHHHHHHHHHhhhccCCCCCeEEEEccCCCCHHHHhhhcCCCCCCCc
Q 006122 257 SDYVQAAVSTVLLIHDKEPPGDILVFLTGQDDIDATIQLLTEEARTSKKNSSGLIILPLYSGLSRAEQEQVFSPTPRGKR 336 (660)
Q Consensus 257 ~~~~~~~~~~~~~~~~~~~~~~iLVF~~~~~~i~~l~~~L~~~~~~~~~~~~~~~v~~lh~~l~~~~r~~v~~~f~~g~~ 336 (660)
.+.. ...+..+......+++||||+++++++.+++.|.+. ++.+..+||++++++|..+++.|++|+.
T Consensus 260 ~~~k---~~~l~~~~~~~~~~~~lVf~~~~~~~~~l~~~L~~~---------~~~~~~~h~~~~~~~r~~~~~~f~~g~~ 327 (410)
T 2j0s_A 260 EEWK---FDTLCDLYDTLTITQAVIFCNTKRKVDWLTEKMREA---------NFTVSSMHGDMPQKERESIMKEFRSGAS 327 (410)
T ss_dssp TTHH---HHHHHHHHHHHTSSEEEEECSSHHHHHHHHHHHHHT---------TCCCEEECTTSCHHHHHHHHHHHHHTSS
T ss_pred HHhH---HHHHHHHHHhcCCCcEEEEEcCHHHHHHHHHHHHhC---------CCceEEeeCCCCHHHHHHHHHHHHCCCC
Confidence 2222 122233333335568999999999999999999875 6789999999999999999999999999
Q ss_pred EEEEeCCCcccccCCCCeEEEEeCCCccceeecCCCCcccceeeecCHHhHHHhhcccCCC-CCcEEEEccChHHhh
Q 006122 337 KVVISTNIAETSLTLEGIVYVVDSGFSKQRFYNPISDIENLVVAPISKASARQRAGRAGRV-RPGKCYRLYTEEYFV 412 (660)
Q Consensus 337 ~vlvaT~i~e~Gidip~v~~VId~g~~k~~~~~~~~~~~~l~~~~~s~~~~~QR~GRaGR~-~~G~~~~l~~~~~~~ 412 (660)
+|||||+++++|+|+|++++||+++. |.+..+|.||+||+||. ++|.|+.++++.+..
T Consensus 328 ~vlv~T~~~~~Gidi~~v~~Vi~~~~------------------p~s~~~~~Qr~GR~gR~g~~g~~~~~~~~~~~~ 386 (410)
T 2j0s_A 328 RVLISTDVWARGLDVPQVSLIINYDL------------------PNNRELYIHRIGRSGRYGRKGVAINFVKNDDIR 386 (410)
T ss_dssp CEEEECGGGSSSCCCTTEEEEEESSC------------------CSSHHHHHHHHTTSSGGGCCEEEEEEEEGGGHH
T ss_pred CEEEECChhhCcCCcccCCEEEEECC------------------CCCHHHHHHhcccccCCCCceEEEEEecHHHHH
Confidence 99999999999999999999999777 88999999999999999 899999999987643
No 19
>3o8b_A HCV NS3 protease/helicase; ntpase, RNA, translocation, protein-RNA compl protease/ntpase/helicase, hydrolase; 1.95A {Hepatitis c virus} PDB: 3o8c_A* 3o8d_A* 3o8r_A* 4b71_A* 4b73_A* 4b74_A* 4b76_A* 4b75_A* 4a92_A* 1cu1_A 4b6e_A* 4b6f_A* 2zjo_A* 1a1v_A* 1hei_A 3kqn_A* 3kql_A* 3kqu_A* 3kqh_A 3kqk_A ...
Probab=100.00 E-value=1.7e-38 Score=352.06 Aligned_cols=305 Identities=21% Similarity=0.281 Sum_probs=223.3
Q ss_pred hHHHHhcCCCcHHHHHHHHHHHhcCCEEEEEcCCCCcHHHHHHHHHHhccccCCCeEEEEeCchHHHHHHHHHHHHHHhC
Q 006122 41 SIEKQRQRLPVYKYRTAILYLVETHATTIIVGETGSGKTTQIPQYLKEAGWADGGRVIACTQPRRLAVQAVASRVAEEMG 120 (660)
Q Consensus 41 ~~~~~~~~lPi~~~~~~i~~~l~~~~~vii~apTGsGKT~~ip~~l~~~~~~~~~~~i~v~p~r~la~~~~~~~~~~~~~ 120 (660)
+..+.+..+|++.+|++|+.++.++++++++||||||||+++++.+++. +.++++++|+|+++. ++++++++.++
T Consensus 208 e~l~~r~~lP~~~~q~~i~~~L~~~~~vlv~ApTGSGKT~a~~l~ll~~----g~~vLVl~PTReLA~-Qia~~l~~~~g 282 (666)
T 3o8b_A 208 ESMETTMRSPVFTDNSSPPAVPQSFQVAHLHAPTGSGKSTKVPAAYAAQ----GYKVLVLNPSVAATL-GFGAYMSKAHG 282 (666)
T ss_dssp HHHHHHHHSCSCCCCCSCCCCCSSCEEEEEECCTTSCTTTHHHHHHHHT----TCCEEEEESCHHHHH-HHHHHHHHHHS
T ss_pred HhhhhhccCCcHHHHHHHHHHHHcCCeEEEEeCCchhHHHHHHHHHHHC----CCeEEEEcchHHHHH-HHHHHHHHHhC
Confidence 3456778899999999999999999999999999999998888887764 346788888877665 46778999999
Q ss_pred CeeeeEEeeeeeccccCCCCCceEEEechHHHHHHHhcCCCCCCCcEEEEeCCCcCCcChhHHHHHHHHHHHhcCCceEE
Q 006122 121 VKVGEEVGYTIRFEDFTNKDLTAIKFLTDGVLLREMMDDPLLTKYSVIMVDEAHERSISTDILLGLLKKIQRCRSDLRLI 200 (660)
Q Consensus 121 ~~~~~~vg~~~~~~~~~~~~~~~I~v~T~~~ll~~l~~~~~l~~~~~iIiDE~Her~~~~d~ll~~l~~~~~~~~~~kii 200 (660)
..++..+|+.. ... ..+|+|+|||+|++. ....+.++++|||||||+++...+..+..+...........++
T Consensus 283 ~~vg~~vG~~~-----~~~-~~~IlV~TPGrLl~~--~~l~l~~l~~lVlDEAH~l~~~~~~~l~~Il~~l~~~~~~lli 354 (666)
T 3o8b_A 283 IDPNIRTGVRT-----ITT-GAPVTYSTYGKFLAD--GGCSGGAYDIIICDECHSTDSTTILGIGTVLDQAETAGARLVV 354 (666)
T ss_dssp CCCEEECSSCE-----ECC-CCSEEEEEHHHHHHT--TSCCTTSCSEEEETTTTCCSHHHHHHHHHHHHHTTTTTCSEEE
T ss_pred CCeeEEECcEe-----ccC-CCCEEEECcHHHHhC--CCcccCcccEEEEccchhcCccHHHHHHHHHHhhhhcCCceEE
Confidence 98888888644 223 689999999998421 2223778999999999987665544444333333333334478
Q ss_pred EeecccchHHHHHHhhcCCCCCCCcccccCCCCCCeEEEECCccccceEEecCCCchhHHHHHHHHHHHHHhcCCCCcEE
Q 006122 201 ISSATIEAKSMSAFFHARKGRRGLEGVELVPRLEPAILSVEGRGFNVQIHYVEEPVSDYVQAAVSTVLLIHDKEPPGDIL 280 (660)
Q Consensus 201 ~~SAT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iL 280 (660)
+||||++.. +... .+.+..+.-.. .-...+...... ......+++|
T Consensus 355 l~SAT~~~~-----i~~~---------------~p~i~~v~~~~-~~~i~~~~~~~~-------------l~~~~~~~vL 400 (666)
T 3o8b_A 355 LATATPPGS-----VTVP---------------HPNIEEVALSN-TGEIPFYGKAIP-------------IEAIRGGRHL 400 (666)
T ss_dssp EEESSCTTC-----CCCC---------------CTTEEEEECBS-CSSEEETTEEEC-------------GGGSSSSEEE
T ss_pred EECCCCCcc-----cccC---------------CcceEEEeecc-cchhHHHHhhhh-------------hhhccCCcEE
Confidence 889999642 1100 00011111100 000111110000 0123578899
Q ss_pred EEcCCHHHHHHHHHHHHHHhhhccCCCCCeEEEEccCCCCHHHHhhhcCCCCCCCcEEEEeCCCcccccCCCCeEEEEeC
Q 006122 281 VFLTGQDDIDATIQLLTEEARTSKKNSSGLIILPLYSGLSRAEQEQVFSPTPRGKRKVVISTNIAETSLTLEGIVYVVDS 360 (660)
Q Consensus 281 VF~~~~~~i~~l~~~L~~~~~~~~~~~~~~~v~~lh~~l~~~~r~~v~~~f~~g~~~vlvaT~i~e~Gidip~v~~VId~ 360 (660)
|||+++++++.+++.|.+. ++.+..+||+|++++ ++++..+||||||++++|||+| |++|||+
T Consensus 401 VFv~Tr~~ae~la~~L~~~---------g~~v~~lHG~l~q~e-------r~~~~~~VLVATdVaerGIDId-V~~VI~~ 463 (666)
T 3o8b_A 401 IFCHSKKKCDELAAKLSGL---------GINAVAYYRGLDVSV-------IPTIGDVVVVATDALMTGYTGD-FDSVIDC 463 (666)
T ss_dssp EECSCHHHHHHHHHHHHTT---------TCCEEEECTTSCGGG-------SCSSSCEEEEECTTHHHHCCCC-BSEEEEC
T ss_pred EEeCCHHHHHHHHHHHHhC---------CCcEEEecCCCCHHH-------HHhCCCcEEEECChHHccCCCC-CcEEEec
Confidence 9999999999999999765 788999999998865 3456679999999999999998 9999999
Q ss_pred CCcccee----ecCCCCcccceeeecCHHhHHHhhcccCCCCCcEEEEccChHHh
Q 006122 361 GFSKQRF----YNPISDIENLVVAPISKASARQRAGRAGRVRPGKCYRLYTEEYF 411 (660)
Q Consensus 361 g~~k~~~----~~~~~~~~~l~~~~~s~~~~~QR~GRaGR~~~G~~~~l~~~~~~ 411 (660)
|+.+..+ |||..++... ..|.|.++|.||+||+||.++|. |.||++.+.
T Consensus 464 Gl~~~~ViNyDydP~~gl~~~-~~P~s~~syiQRiGRtGRg~~G~-i~lvt~~e~ 516 (666)
T 3o8b_A 464 NTCVTQTVDFSLDPTFTIETT-TVPQDAVSRSQRRGRTGRGRRGI-YRFVTPGER 516 (666)
T ss_dssp CEEEEEEEECCCSSSCEEEEE-EEECBHHHHHHHHTTBCSSSCEE-EEESCCCCB
T ss_pred Ccccccccccccccccccccc-cCcCCHHHHHHHhccCCCCCCCE-EEEEecchh
Confidence 9888775 5565666543 56999999999999999999999 999987654
No 20
>3fmp_B ATP-dependent RNA helicase DDX19B; nuclear porin, nuclear pore complex, nucleocytoplasmic trans mRNA export, protein interaction, beta-propeller; HET: ADP; 3.19A {Homo sapiens}
Probab=100.00 E-value=2.8e-38 Score=347.79 Aligned_cols=340 Identities=16% Similarity=0.155 Sum_probs=123.4
Q ss_pred ccCCCCCCCccchHhHHHHhcCCCcHHHHHHHHHHHhcC--CEEEEEcCCCCcHHHHHHHHHHhcccc--CCCeEEEEeC
Q 006122 27 SSLSSASSIGYGYASIEKQRQRLPVYKYRTAILYLVETH--ATTIIVGETGSGKTTQIPQYLKEAGWA--DGGRVIACTQ 102 (660)
Q Consensus 27 ~~~~~~~~~~~~~~~~~~~~~~lPi~~~~~~i~~~l~~~--~~vii~apTGsGKT~~ip~~l~~~~~~--~~~~~i~v~p 102 (660)
.+|.+++++......+.+....-| +++|.+++..+..+ ++++++||||||||......+...... .+.++|+++|
T Consensus 92 ~~f~~~~l~~~l~~~l~~~g~~~p-~~~Q~~ai~~il~~~~~~~l~~a~TGsGKT~~~~l~il~~l~~~~~~~~~lil~P 170 (479)
T 3fmp_B 92 KSFEELRLKPQLLQGVYAMGFNRP-SKIQENALPLMLAEPPQNLIAQSQSGTGKTAAFVLAMLSQVEPANKYPQCLCLSP 170 (479)
T ss_dssp CCSGGGTCCHHHHHHHHHTTCCSC-CHHHHHHHHHHTSBSCCEEEEECCSSSSHHHHHHHHHHTTCCTTSCSCCEEEECS
T ss_pred CCHHHcCCCHHHHHHHHHcCCCCC-CHHHHHHHHHHHcCCCCcEEEEcCCCCchhHHHHHHHHHHHhhcCCCCcEEEEeC
Confidence 478899999988888877555444 55666777777665 899999999999995544444433222 2337899999
Q ss_pred chHHHHHHHHHHHHHHh----CCeeeeEEeeeeeccccCCCCCceEEEechHHHHHHHhcCCC--CCCCcEEEEeCCCcC
Q 006122 103 PRRLAVQAVASRVAEEM----GVKVGEEVGYTIRFEDFTNKDLTAIKFLTDGVLLREMMDDPL--LTKYSVIMVDEAHER 176 (660)
Q Consensus 103 ~r~la~~~~~~~~~~~~----~~~~~~~vg~~~~~~~~~~~~~~~I~v~T~~~ll~~l~~~~~--l~~~~~iIiDE~Her 176 (660)
+++|+.|. ++.+.+.. +..++..+|.. ........ ..+|+|+||+.|++.+.+... +.++++|||||+|..
T Consensus 171 t~~La~Q~-~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~-~~~Ivv~Tp~~l~~~l~~~~~~~~~~~~~iViDEah~~ 247 (479)
T 3fmp_B 171 TYELALQT-GKVIEQMGKFYPELKLAYAVRGN-KLERGQKI-SEQIVIGTPGTVLDWCSKLKFIDPKKIKVFVLDEADVM 247 (479)
T ss_dssp SHHHHHHH-HHHHHHHHTTSTTCCEEEESTTC-CCCTTCCC-CCSEEEECHHHHHHHHTTSCCCCGGGCCEEEECCHHHH
T ss_pred hHHHHHHH-HHHHHHHHhhCCCceEEEEeCCc-cccccccC-CCCEEEECchHHHHHHHhcCCcCcccCCEEEEECHHHH
Confidence 99998874 23333222 23333333321 11122222 578999999999999866443 689999999999943
Q ss_pred CcChhHHHHHHHHHHHhcCCceEEEeecccchH--HHHHHhhcCCCCCCCcccccCCCCCCeEEEECCcc---ccceEEe
Q 006122 177 SISTDILLGLLKKIQRCRSDLRLIISSATIEAK--SMSAFFHARKGRRGLEGVELVPRLEPAILSVEGRG---FNVQIHY 251 (660)
Q Consensus 177 ~~~~d~ll~~l~~~~~~~~~~kii~~SAT~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~v~~~~ 251 (660)
.....+............++.++|++|||++.. .+...+...+ ..+.+.... ..+...+
T Consensus 248 ~~~~~~~~~~~~i~~~~~~~~~~i~~SAT~~~~~~~~~~~~~~~~----------------~~i~~~~~~~~~~~~~~~~ 311 (479)
T 3fmp_B 248 IATQGHQDQSIRIQRMLPRNCQMLLFSATFEDSVWKFAQKVVPDP----------------NVIKLKREEETLDTIKQYY 311 (479)
T ss_dssp HTSTTHHHHHHHHHTTSCTTSEEEEEESCCCHHHHHHHHHHSSSE----------------EEEEEC-------------
T ss_pred hhcCCcHHHHHHHHhhCCccceEEEEeCCCCHHHHHHHHHHcCCC----------------eEEeccccccCcCCceEEE
Confidence 322344444444444456789999999999554 3333322221 133332221 1122222
Q ss_pred cCCCchhHHHHHHHHHHHHHhcCCCCcEEEEcCCHHHHHHHHHHHHHHhhhccCCCCCeEEEEccCCCCHHHHhhhcCCC
Q 006122 252 VEEPVSDYVQAAVSTVLLIHDKEPPGDILVFLTGQDDIDATIQLLTEEARTSKKNSSGLIILPLYSGLSRAEQEQVFSPT 331 (660)
Q Consensus 252 ~~~~~~~~~~~~~~~~~~~~~~~~~~~iLVF~~~~~~i~~l~~~L~~~~~~~~~~~~~~~v~~lh~~l~~~~r~~v~~~f 331 (660)
....... .....+..++.....+++||||+++++++.+++.|.+. +..+..+||++++.+|..+++.|
T Consensus 312 ~~~~~~~---~~~~~l~~~~~~~~~~~~lvF~~s~~~~~~l~~~L~~~---------~~~v~~lh~~~~~~~R~~~~~~f 379 (479)
T 3fmp_B 312 VLCSSRD---EKFQALCNLYGAITIAQAMIFCHTRKTASWLAAELSKE---------GHQVALLSGEMMVEQRAAVIERF 379 (479)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred EEeCCHH---HHHHHHHHHHhhccCCceEEEeCcHHHHHHHHHHHHhC---------CccEEEecCCCCHHHHHHHHHHH
Confidence 2221111 12233333444445678999999999999999999775 67899999999999999999999
Q ss_pred CCCCcEEEEeCCCcccccCCCCeEEEEeCCCccceeecCCCCcccceeeecCHHhHHHhhcccCCC-CCcEEEEccChHH
Q 006122 332 PRGKRKVVISTNIAETSLTLEGIVYVVDSGFSKQRFYNPISDIENLVVAPISKASARQRAGRAGRV-RPGKCYRLYTEEY 410 (660)
Q Consensus 332 ~~g~~~vlvaT~i~e~Gidip~v~~VId~g~~k~~~~~~~~~~~~l~~~~~s~~~~~QR~GRaGR~-~~G~~~~l~~~~~ 410 (660)
++|+.+|||||+++++|+|+|++++||++++.. ... .+.|..+|.||+|||||. ++|.|+.++++..
T Consensus 380 ~~g~~~iLv~T~~~~~GlDip~v~~VI~~d~p~--------~~~----~~~s~~~~~Qr~GRagR~g~~G~~i~~~~~~~ 447 (479)
T 3fmp_B 380 REGKEKVLVTTNVCARGIDVEQVSVVINFDLPV--------DKD----GNPDNETYLHRIGRTGRFGKRGLAVNMVDSKH 447 (479)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HcCCCcEEEEccccccCCccccCCEEEEecCCC--------CCc----cCCCHHHHHHHhcccccCCCCceEEEEEcCcc
Confidence 999999999999999999999999999976621 100 025678899999999998 7899999998654
No 21
>1fuu_A Yeast initiation factor 4A; IF4A, helicase, DEAD-box protein, translation; 2.50A {Saccharomyces cerevisiae} SCOP: c.37.1.19 PDB: 2vso_A* 2vsx_A*
Probab=100.00 E-value=9e-39 Score=342.51 Aligned_cols=336 Identities=17% Similarity=0.230 Sum_probs=127.1
Q ss_pred cCCCCCCCccchHhHHHHhcCCCcHHHHHHHHHHHhcCCEEEEEcCCCCcHHHHHHHHHHhc--cccCCCeEEEEeCchH
Q 006122 28 SLSSASSIGYGYASIEKQRQRLPVYKYRTAILYLVETHATTIIVGETGSGKTTQIPQYLKEA--GWADGGRVIACTQPRR 105 (660)
Q Consensus 28 ~~~~~~~~~~~~~~~~~~~~~lPi~~~~~~i~~~l~~~~~vii~apTGsGKT~~ip~~l~~~--~~~~~~~~i~v~p~r~ 105 (660)
+|.+++++......+..... -..+++|.+++..+.+++++++.+|||+|||......+... ....+.++++++|++.
T Consensus 22 ~f~~~~l~~~l~~~l~~~g~-~~~~~~Q~~~i~~i~~~~~~lv~~~TGsGKT~~~~~~~~~~l~~~~~~~~~lil~P~~~ 100 (394)
T 1fuu_A 22 KFDDMELDENLLRGVFGYGF-EEPSAIQQRAIMPIIEGHDVLAQAQSGTGKTGTFSIAALQRIDTSVKAPQALMLAPTRE 100 (394)
T ss_dssp SSGGGCCCHHHHHHHHHHTC-CSCCHHHHHHHHHHHHTCCEEECCCSSHHHHHHHHHHHHHHCCTTCCSCCEEEECSSHH
T ss_pred ChhhcCCCHHHHHHHHHcCC-CCCCHHHHHHHHHHhCCCCEEEECCCCChHHHHHHHHHHHHhhccCCCCCEEEEcCCHH
Confidence 49999999988887766543 35677888888888888999999999999995433333332 2223457899999998
Q ss_pred HHHHHHHHHHHH---HhCCeeeeEEeeeeeccccCCCCCceEEEechHHHHHHHhcCCC-CCCCcEEEEeCCCcCCcChh
Q 006122 106 LAVQAVASRVAE---EMGVKVGEEVGYTIRFEDFTNKDLTAIKFLTDGVLLREMMDDPL-LTKYSVIMVDEAHERSISTD 181 (660)
Q Consensus 106 la~~~~~~~~~~---~~~~~~~~~vg~~~~~~~~~~~~~~~I~v~T~~~ll~~l~~~~~-l~~~~~iIiDE~Her~~~~d 181 (660)
|+.|. .+.+.+ ..+..++...|.....+........+|+|+||+.+.+.+..... +.++++||+||||. ..+.+
T Consensus 101 L~~q~-~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~i~v~T~~~l~~~~~~~~~~~~~~~~vIiDEah~-~~~~~ 178 (394)
T 1fuu_A 101 LALQI-QKVVMALAFHMDIKVHACIGGTSFVEDAEGLRDAQIVVGTPGRVFDNIQRRRFRTDKIKMFILDEADE-MLSSG 178 (394)
T ss_dssp HHHHH-HHHHHHHTTTSCCCEEEECSSCCHHHHHHHHHHCSEEEECHHHHHHHHHTTSSCCTTCCEEEEETHHH-HHHTT
T ss_pred HHHHH-HHHHHHHhccCCeeEEEEeCCCchHHHHhhcCCCCEEEECHHHHHHHHHhCCcchhhCcEEEEEChHH-hhCCC
Confidence 88763 333333 34566666666432211111111578999999999998876554 88999999999994 22223
Q ss_pred HHHHHHHHHHHhcCCceEEEeecccchH---HHHHHhhcCCCCCCCcccccCCCCCCeEEEECCccc---cceEEecCCC
Q 006122 182 ILLGLLKKIQRCRSDLRLIISSATIEAK---SMSAFFHARKGRRGLEGVELVPRLEPAILSVEGRGF---NVQIHYVEEP 255 (660)
Q Consensus 182 ~ll~~l~~~~~~~~~~kii~~SAT~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~v~~~~~~~~ 255 (660)
+...+.+.+....++.++++||||++.. ....++.... .+.+..... .+..++....
T Consensus 179 ~~~~~~~~~~~~~~~~~~i~~SAT~~~~~~~~~~~~~~~~~-----------------~~~~~~~~~~~~~~~~~~~~~~ 241 (394)
T 1fuu_A 179 FKEQIYQIFTLLPPTTQVVLLSATMPNDVLEVTTKFMRNPV-----------------RILVKKDELTLEGIKQFYVNVE 241 (394)
T ss_dssp CHHHHHHHHHHSCTTCEEEEECSSCCHHHHHHHHHHCCSCE-----------------EEEECC----------------
T ss_pred cHHHHHHHHHhCCCCceEEEEEEecCHHHHHHHHHhcCCCe-----------------EEEecCccccCCCceEEEEEcC
Confidence 3333444444456788999999999643 2234443221 222222111 1122222221
Q ss_pred chhHHHHHHHHHHHHHhcCCCCcEEEEcCCHHHHHHHHHHHHHHhhhccCCCCCeEEEEccCCCCHHHHhhhcCCCCCCC
Q 006122 256 VSDYVQAAVSTVLLIHDKEPPGDILVFLTGQDDIDATIQLLTEEARTSKKNSSGLIILPLYSGLSRAEQEQVFSPTPRGK 335 (660)
Q Consensus 256 ~~~~~~~~~~~~~~~~~~~~~~~iLVF~~~~~~i~~l~~~L~~~~~~~~~~~~~~~v~~lh~~l~~~~r~~v~~~f~~g~ 335 (660)
..++. ...+..+......+++||||+++++++.+++.|.+. ++.+..+||+++.++|..+++.|++|+
T Consensus 242 ~~~~~---~~~l~~~~~~~~~~~~lVf~~~~~~~~~l~~~L~~~---------~~~~~~~~~~~~~~~r~~~~~~f~~~~ 309 (394)
T 1fuu_A 242 EEEYK---YECLTDLYDSISVTQAVIFCNTRRKVEELTTKLRND---------KFTVSAIYSDLPQQERDTIMKEFRSGS 309 (394)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred chhhH---HHHHHHHHhcCCCCcEEEEECCHHHHHHHHHHHHHc---------CCeEEEeeCCCCHHHHHHHHHHHHCCC
Confidence 11111 122223333345678999999999999999999775 678999999999999999999999999
Q ss_pred cEEEEeCCCcccccCCCCeEEEEeCCCccceeecCCCCcccceeeecCHHhHHHhhcccCCC-CCcEEEEccChHHhhh
Q 006122 336 RKVVISTNIAETSLTLEGIVYVVDSGFSKQRFYNPISDIENLVVAPISKASARQRAGRAGRV-RPGKCYRLYTEEYFVK 413 (660)
Q Consensus 336 ~~vlvaT~i~e~Gidip~v~~VId~g~~k~~~~~~~~~~~~l~~~~~s~~~~~QR~GRaGR~-~~G~~~~l~~~~~~~~ 413 (660)
.+|||||+++++|+|+|++++||+++. |.|..+|.||+||+||. ++|.|+.++++++...
T Consensus 310 ~~vlv~T~~~~~Gldi~~~~~Vi~~~~------------------p~s~~~~~Qr~GR~~R~g~~g~~~~~~~~~~~~~ 370 (394)
T 1fuu_A 310 SRILISTDLLARGIDVQQVSLVINYDL------------------PANKENYIHRIGRGGRFGRKGVAINFVTNEDVGA 370 (394)
T ss_dssp -------------------------------------------------------------------------------
T ss_pred CcEEEECChhhcCCCcccCCEEEEeCC------------------CCCHHHHHHHcCcccCCCCCceEEEEEchhHHHH
Confidence 999999999999999999999999776 78889999999999999 8999999999876544
No 22
>1oyw_A RECQ helicase, ATP-dependent DNA helicase; winged helix, helix-turn-helix, ATP binding, Zn(2+) binding, hydrolase; 1.80A {Escherichia coli} SCOP: a.4.5.43 c.37.1.19 c.37.1.19 PDB: 1oyy_A*
Probab=100.00 E-value=2e-37 Score=342.58 Aligned_cols=329 Identities=16% Similarity=0.174 Sum_probs=234.5
Q ss_pred cCCCCCCCccchHhHHHHhcCCCcHHHHHHHHHHHhcCCEEEEEcCCCCcHH--HHHHHHHHhccccCCCeEEEEeCchH
Q 006122 28 SLSSASSIGYGYASIEKQRQRLPVYKYRTAILYLVETHATTIIVGETGSGKT--TQIPQYLKEAGWADGGRVIACTQPRR 105 (660)
Q Consensus 28 ~~~~~~~~~~~~~~~~~~~~~lPi~~~~~~i~~~l~~~~~vii~apTGsGKT--~~ip~~l~~~~~~~~~~~i~v~p~r~ 105 (660)
+|..++++......+.+.-..-...++|.++++++.+++++++.+|||+||| +++|.+.. .+.+|+++|+++
T Consensus 3 ~fe~l~L~~~~~~~l~~~~g~~~~r~~Q~~~i~~il~g~d~lv~apTGsGKTl~~~lp~l~~------~g~~lvi~P~~a 76 (523)
T 1oyw_A 3 QAEVLNLESGAKQVLQETFGYQQFRPGQEEIIDTVLSGRDCLVVMPTGGGKSLCYQIPALLL------NGLTVVVSPLIS 76 (523)
T ss_dssp CCCCSSHHHHHHHHHHHTTCCSSCCTTHHHHHHHHHTTCCEEEECSCHHHHHHHHHHHHHHS------SSEEEEECSCHH
T ss_pred ChhhCCCCHHHHHHHHHHhCCCCCCHHHHHHHHHHHcCCCEEEECCCCcHHHHHHHHHHHHh------CCCEEEECChHH
Confidence 5888888877666555532323457789999999999999999999999999 57776542 356899999999
Q ss_pred HHHHHHHHHHHHHhCCeeeeEEeeeeecc------ccCCCCCceEEEechHHHHHHHhcC-CCCCCCcEEEEeCCCcCCc
Q 006122 106 LAVQAVASRVAEEMGVKVGEEVGYTIRFE------DFTNKDLTAIKFLTDGVLLREMMDD-PLLTKYSVIMVDEAHERSI 178 (660)
Q Consensus 106 la~~~~~~~~~~~~~~~~~~~vg~~~~~~------~~~~~~~~~I~v~T~~~ll~~l~~~-~~l~~~~~iIiDE~Her~~ 178 (660)
|+.+++.. + ...+..+....|.....+ ..... ..+|+|+||+.|......+ ....++++|||||||+.+-
T Consensus 77 L~~q~~~~-l-~~~gi~~~~l~~~~~~~~~~~~~~~~~~~-~~~ilv~Tpe~l~~~~~~~~l~~~~~~~vViDEaH~i~~ 153 (523)
T 1oyw_A 77 LMKDQVDQ-L-QANGVAAACLNSTQTREQQLEVMTGCRTG-QIRLLYIAPERLMLDNFLEHLAHWNPVLLAVDEAHCISQ 153 (523)
T ss_dssp HHHHHHHH-H-HHTTCCEEEECTTSCHHHHHHHHHHHHHT-CCSEEEECHHHHTSTTHHHHHTTSCEEEEEESSGGGGCT
T ss_pred HHHHHHHH-H-HHcCCcEEEEeCCCCHHHHHHHHHHHhcC-CCCEEEECHHHHhChHHHHHHhhCCCCEEEEeCccccCc
Confidence 98876554 2 345666655444222111 11122 5899999999985321111 1146889999999996542
Q ss_pred C---hhHHHHHHHHHHHhcCCceEEEeecccchHH---HHHHhhcCCCCCCCcccccCCCCCCeEEEECCccccceEEec
Q 006122 179 S---TDILLGLLKKIQRCRSDLRLIISSATIEAKS---MSAFFHARKGRRGLEGVELVPRLEPAILSVEGRGFNVQIHYV 252 (660)
Q Consensus 179 ~---~d~ll~~l~~~~~~~~~~kii~~SAT~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~ 252 (660)
. .......+..+....++.+++++|||++... +.++++-.. + .+.+.+...+ .+.|.
T Consensus 154 ~g~~fr~~~~~l~~l~~~~~~~~~i~lSAT~~~~~~~~i~~~l~~~~---------------~-~~~~~~~~r~-~l~~~ 216 (523)
T 1oyw_A 154 WGHDFRPEYAALGQLRQRFPTLPFMALTATADDTTRQDIVRLLGLND---------------P-LIQISSFDRP-NIRYM 216 (523)
T ss_dssp TSSCCCHHHHGGGGHHHHCTTSCEEEEESCCCHHHHHHHHHHHTCCS---------------C-EEEECCCCCT-TEEEE
T ss_pred CCCccHHHHHHHHHHHHhCCCCCEEEEeCCCCHHHHHHHHHHhCCCC---------------C-eEEeCCCCCC-ceEEE
Confidence 2 2222333445556667899999999996643 445554221 0 2222222221 11221
Q ss_pred CCCchhHHHHHHHHHHHHHhcCCCCcEEEEcCCHHHHHHHHHHHHHHhhhccCCCCCeEEEEccCCCCHHHHhhhcCCCC
Q 006122 253 EEPVSDYVQAAVSTVLLIHDKEPPGDILVFLTGQDDIDATIQLLTEEARTSKKNSSGLIILPLYSGLSRAEQEQVFSPTP 332 (660)
Q Consensus 253 ~~~~~~~~~~~~~~~~~~~~~~~~~~iLVF~~~~~~i~~l~~~L~~~~~~~~~~~~~~~v~~lh~~l~~~~r~~v~~~f~ 332 (660)
.....+.... +........++++||||+++++++.+++.|.+. ++.+..+||+|++++|..+++.|.
T Consensus 217 v~~~~~~~~~----l~~~l~~~~~~~~IVf~~sr~~~e~l~~~L~~~---------g~~~~~~h~~l~~~~R~~~~~~f~ 283 (523)
T 1oyw_A 217 LMEKFKPLDQ----LMRYVQEQRGKSGIIYCNSRAKVEDTAARLQSK---------GISAAAYHAGLENNVRADVQEKFQ 283 (523)
T ss_dssp EEECSSHHHH----HHHHHHHTTTCCEEEECSSHHHHHHHHHHHHHT---------TCCEEEECTTSCHHHHHHHHHHHH
T ss_pred EEeCCCHHHH----HHHHHHhcCCCcEEEEeCCHHHHHHHHHHHHHC---------CCCEEEecCCCCHHHHHHHHHHHH
Confidence 1111222222 333333446678999999999999999999875 778999999999999999999999
Q ss_pred CCCcEEEEeCCCcccccCCCCeEEEEeCCCccceeecCCCCcccceeeecCHHhHHHhhcccCCC-CCcEEEEccChHHh
Q 006122 333 RGKRKVVISTNIAETSLTLEGIVYVVDSGFSKQRFYNPISDIENLVVAPISKASARQRAGRAGRV-RPGKCYRLYTEEYF 411 (660)
Q Consensus 333 ~g~~~vlvaT~i~e~Gidip~v~~VId~g~~k~~~~~~~~~~~~l~~~~~s~~~~~QR~GRaGR~-~~G~~~~l~~~~~~ 411 (660)
+|+.+|||||+++++|||+|+|++||+++. |.|.++|.||+|||||. .+|.|+.+|++++.
T Consensus 284 ~g~~~vlVaT~a~~~GiD~p~v~~VI~~~~------------------p~s~~~y~Qr~GRaGR~g~~~~~~l~~~~~d~ 345 (523)
T 1oyw_A 284 RDDLQIVVATVAFGMGINKPNVRFVVHFDI------------------PRNIESYYQETGRAGRDGLPAEAMLFYDPADM 345 (523)
T ss_dssp TTSCSEEEECTTSCTTTCCTTCCEEEESSC------------------CSSHHHHHHHHTTSCTTSSCEEEEEEECHHHH
T ss_pred cCCCeEEEEechhhCCCCccCccEEEEECC------------------CCCHHHHHHHhccccCCCCCceEEEEeCHHHH
Confidence 999999999999999999999999999887 88999999999999999 79999999998876
Q ss_pred hh
Q 006122 412 VK 413 (660)
Q Consensus 412 ~~ 413 (660)
..
T Consensus 346 ~~ 347 (523)
T 1oyw_A 346 AW 347 (523)
T ss_dssp HH
T ss_pred HH
Confidence 53
No 23
>4a4z_A Antiviral helicase SKI2; hydrolase, ATPase, mRNA degradation, exosome; HET: ANP; 2.40A {Saccharomyces cerevisiae} PDB: 4a4k_A
Probab=100.00 E-value=7.5e-38 Score=367.64 Aligned_cols=328 Identities=16% Similarity=0.165 Sum_probs=231.0
Q ss_pred cCCCcHHHHHHHHHHHhcCCEEEEEcCCCCcHHHH--HHHHHHhccccCCCeEEEEeCchHHHHHHHHHHHHHHh-CCee
Q 006122 47 QRLPVYKYRTAILYLVETHATTIIVGETGSGKTTQ--IPQYLKEAGWADGGRVIACTQPRRLAVQAVASRVAEEM-GVKV 123 (660)
Q Consensus 47 ~~lPi~~~~~~i~~~l~~~~~vii~apTGsGKT~~--ip~~l~~~~~~~~~~~i~v~p~r~la~~~~~~~~~~~~-~~~~ 123 (660)
..+++..+|.+++.++.+++++++.||||||||+. ++.... ...+.++++++|++.|+.|. ++++.+.+ +..+
T Consensus 36 ~~f~l~~~Q~~aI~~il~g~~vlv~apTGsGKTlv~~~~i~~~---~~~g~~vlvl~PtraLa~Q~-~~~l~~~~~~~~v 111 (997)
T 4a4z_A 36 WPFELDTFQKEAVYHLEQGDSVFVAAHTSAGKTVVAEYAIAMA---HRNMTKTIYTSPIKALSNQK-FRDFKETFDDVNI 111 (997)
T ss_dssp CSSCCCHHHHHHHHHHHTTCEEEEECCTTSCSHHHHHHHHHHH---HHTTCEEEEEESCGGGHHHH-HHHHHTTC--CCE
T ss_pred CCCCCCHHHHHHHHHHHcCCCEEEEECCCCcHHHHHHHHHHHH---HhcCCeEEEEeCCHHHHHHH-HHHHHHHcCCCeE
Confidence 34568999999999999999999999999999943 332222 23566789999999998875 44455444 5667
Q ss_pred eeEEeeeeeccccCCCCCceEEEechHHHHHHHhcCCC-CCCCcEEEEeCCCcCCcChhHHHHHHHHHHHhcCCceEEEe
Q 006122 124 GEEVGYTIRFEDFTNKDLTAIKFLTDGVLLREMMDDPL-LTKYSVIMVDEAHERSISTDILLGLLKKIQRCRSDLRLIIS 202 (660)
Q Consensus 124 ~~~vg~~~~~~~~~~~~~~~I~v~T~~~ll~~l~~~~~-l~~~~~iIiDE~Her~~~~d~ll~~l~~~~~~~~~~kii~~ 202 (660)
+..+|... ... .++|+|+||++|.+.+..... +.++++||||||| +..+.++...+.+.+...+++.++|++
T Consensus 112 ~~l~G~~~-----~~~-~~~IlV~Tpe~L~~~l~~~~~~l~~l~lvViDEaH-~l~d~~~g~~~e~ii~~l~~~v~iIlL 184 (997)
T 4a4z_A 112 GLITGDVQ-----INP-DANCLIMTTEILRSMLYRGADLIRDVEFVIFDEVH-YVNDQDRGVVWEEVIIMLPQHVKFILL 184 (997)
T ss_dssp EEECSSCE-----ECT-TSSEEEEEHHHHHHHHHHTCSGGGGEEEEEECCTT-CCCTTCTTCCHHHHHHHSCTTCEEEEE
T ss_pred EEEeCCCc-----cCC-CCCEEEECHHHHHHHHHhCchhhcCCCEEEEECcc-cccccchHHHHHHHHHhcccCCCEEEE
Confidence 76666321 223 689999999999998876654 8899999999999 454444433344444556778999999
Q ss_pred eccc-chHHHHHHhhcCCCCCCCcccccCCCCCCeEEEECCccccceEEecCCC--------c-----hhH---------
Q 006122 203 SATI-EAKSMSAFFHARKGRRGLEGVELVPRLEPAILSVEGRGFNVQIHYVEEP--------V-----SDY--------- 259 (660)
Q Consensus 203 SAT~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~--------~-----~~~--------- 259 (660)
|||+ +...|.+|++..... ...++..+.+..|++.++.... . ..+
T Consensus 185 SAT~~n~~ef~~~l~~~~~~------------~~~vi~~~~r~~pl~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ 252 (997)
T 4a4z_A 185 SATVPNTYEFANWIGRTKQK------------NIYVISTPKRPVPLEINIWAKKELIPVINQNSEFLEANFRKHKEILNG 252 (997)
T ss_dssp ECCCTTHHHHHHHHHHHHTC------------CEEEEECSSCSSCEEEEEEETTEEEEEECTTCCBCHHHHHHHHHHHC-
T ss_pred cCCCCChHHHHHHHhcccCC------------ceEEEecCCCCccceEEEecCCcchhcccchhhhhHHHHHHHHHHhhc
Confidence 9999 888999999753210 1124444555555554332100 0 000
Q ss_pred -------------------------------------------------------------------HHHHHHHHHHHHh
Q 006122 260 -------------------------------------------------------------------VQAAVSTVLLIHD 272 (660)
Q Consensus 260 -------------------------------------------------------------------~~~~~~~~~~~~~ 272 (660)
....+..+.....
T Consensus 253 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~rg~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~l~ 332 (997)
T 4a4z_A 253 ESAKGAPSKTDNGRGGSTARGGRGGSNTRDGRGGRGNSTRGGANRGGSRGAGAIGSNKRKFFTQDGPSKKTWPEIVNYLR 332 (997)
T ss_dssp ----------------------------------------------------------------CCCCTTHHHHHHHHHH
T ss_pred cccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccchhHHHHHHHHHH
Confidence 0011334444555
Q ss_pred cCCCCcEEEEcCCHHHHHHHHHHHHHHhh--------------hccC----------------CCCCeEEEEccCCCCHH
Q 006122 273 KEPPGDILVFLTGQDDIDATIQLLTEEAR--------------TSKK----------------NSSGLIILPLYSGLSRA 322 (660)
Q Consensus 273 ~~~~~~iLVF~~~~~~i~~l~~~L~~~~~--------------~~~~----------------~~~~~~v~~lh~~l~~~ 322 (660)
....+++||||+++++++.++..|.+..- .... ......+.++||+|++.
T Consensus 333 ~~~~~~~IVF~~sr~~~e~la~~L~~~~~~~~~e~~~i~~~~~~~~~~l~~~d~~l~~~~~l~~~l~~gi~~~H~gl~~~ 412 (997)
T 4a4z_A 333 KRELLPMVVFVFSKKRCEEYADWLEGINFCNNKEKSQIHMFIEKSITRLKKEDRDLPQILKTRSLLERGIAVHHGGLLPI 412 (997)
T ss_dssp HTTCCSEEEECSCHHHHHHHHHTTTTCCCCCHHHHHHHHHHHHHHHTTSCHHHHTCHHHHHHHHHHTTTEEEECTTSCHH
T ss_pred hCCCCCEEEEECCHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHhcchhhhcchhHHHHHHHhhcCeeeecCCCCHH
Confidence 55678999999999999999988853100 0000 00022488999999999
Q ss_pred HHhhhcCCCCCCCcEEEEeCCCcccccCCCCeEEEEeCCCccceeecCCCCcccceeeecCHHhHHHhhcccCCC---CC
Q 006122 323 EQEQVFSPTPRGKRKVVISTNIAETSLTLEGIVYVVDSGFSKQRFYNPISDIENLVVAPISKASARQRAGRAGRV---RP 399 (660)
Q Consensus 323 ~r~~v~~~f~~g~~~vlvaT~i~e~Gidip~v~~VId~g~~k~~~~~~~~~~~~l~~~~~s~~~~~QR~GRaGR~---~~ 399 (660)
+|..+++.|++|.++|||||+++++|||+|++.+|+ .+..+ ||... ..|+|..+|.||+|||||. ..
T Consensus 413 ~R~~v~~~F~~G~~kVLvAT~~~a~GIDiP~~~VVi-~~~~k---~dg~~------~~~~s~~~y~Qr~GRAGR~G~~~~ 482 (997)
T 4a4z_A 413 VKELIEILFSKGFIKVLFATETFAMGLNLPTRTVIF-SSIRK---HDGNG------LRELTPGEFTQMAGRAGRRGLDST 482 (997)
T ss_dssp HHHHHHHHHHTTCCSEEEECTHHHHSCCCCCSEEEE-SCSEE---EETTE------EEECCHHHHHHHHGGGCCTTTCSS
T ss_pred HHHHHHHHHHCCCCcEEEEchHhhCCCCCCCceEEE-ecccc---ccCcc------CCCCCHHHHhHHhcccccCCCCcc
Confidence 999999999999999999999999999999955544 45433 55431 2389999999999999997 48
Q ss_pred cEEEEccC
Q 006122 400 GKCYRLYT 407 (660)
Q Consensus 400 G~~~~l~~ 407 (660)
|.||.++.
T Consensus 483 G~vi~l~~ 490 (997)
T 4a4z_A 483 GTVIVMAY 490 (997)
T ss_dssp EEEEEECC
T ss_pred eEEEEecC
Confidence 99999984
No 24
>2whx_A Serine protease/ntpase/helicase NS3; transcription, hydrolase, ATP-binding, reticulum, nucleotidyltransferase, multifunctional enzyme; HET: ADP; 2.20A {Dengue virus 4} PDB: 2vbc_A 2wzq_A
Probab=100.00 E-value=2.7e-37 Score=345.84 Aligned_cols=317 Identities=17% Similarity=0.209 Sum_probs=221.0
Q ss_pred CCC-CCCCccchHhHHH-HhcCCCcHHHHHHHHHHHhcCCEEEEEcCCCCcHHHH--HHHHHHhccccCCCeEEEEeCch
Q 006122 29 LSS-ASSIGYGYASIEK-QRQRLPVYKYRTAILYLVETHATTIIVGETGSGKTTQ--IPQYLKEAGWADGGRVIACTQPR 104 (660)
Q Consensus 29 ~~~-~~~~~~~~~~~~~-~~~~lPi~~~~~~i~~~l~~~~~vii~apTGsGKT~~--ip~~l~~~~~~~~~~~i~v~p~r 104 (660)
|++ +++++.++..+.. ++..+|++++ . +..+.++++++++||||||||++ +|.+ ... ...+.++++++|+|
T Consensus 151 ~~~~l~~~~~~~~~l~~~~~~~lpiq~~--~-i~~l~~g~dvlv~a~TGSGKT~~~~lpil-~~l-~~~~~~vLvl~Ptr 225 (618)
T 2whx_A 151 GNGVVTKSGDYVSAITQAERIGEPDYEV--D-EDIFRKKRLTIMDLHPGAGKTKRILPSIV-REA-LKRRLRTLILAPTR 225 (618)
T ss_dssp CC---------CEECBCCCCCCCCCCCC--C-GGGGSTTCEEEECCCTTSSTTTTHHHHHH-HHH-HHTTCCEEEEESSH
T ss_pred ccccccchHHHHHHHhhccccCCCcccc--C-HHHHhcCCeEEEEcCCCCCHHHHHHHHHH-HHH-HhCCCeEEEEcChH
Confidence 555 6677766655544 5788998866 3 88889999999999999999954 4433 222 22456789999999
Q ss_pred HHHHHHHHHHHHHHhCCeeeeEEeeeeec-cccCCCCCceEEEechHHHHHHHhcCCCCCCCcEEEEeCCCcCCcChhHH
Q 006122 105 RLAVQAVASRVAEEMGVKVGEEVGYTIRF-EDFTNKDLTAIKFLTDGVLLREMMDDPLLTKYSVIMVDEAHERSISTDIL 183 (660)
Q Consensus 105 ~la~~~~~~~~~~~~~~~~~~~vg~~~~~-~~~~~~~~~~I~v~T~~~ll~~l~~~~~l~~~~~iIiDE~Her~~~~d~l 183 (660)
+|+.|.. +.+. +. .++|..+. +....+ ...+.++|.+.+.+.+..++.+.++++|||||||++....+..
T Consensus 226 eLa~Qi~-~~l~---~~----~v~~~~~~l~~~~tp-~~~i~~~t~~~l~~~l~~~~~l~~~~~iViDEah~~~~~~~~~ 296 (618)
T 2whx_A 226 VVAAEME-EALR---GL----PIRYQTPAVKSDHTG-REIVDLMCHATFTTRLLSSTRVPNYNLIVMDEAHFTDPCSVAA 296 (618)
T ss_dssp HHHHHHH-HHTT---TS----CEEECCTTSSCCCCS-SSCEEEEEHHHHHHHHHHCSSCCCCSEEEEESTTCCSHHHHHH
T ss_pred HHHHHHH-HHhc---CC----ceeEecccceeccCC-CceEEEEChHHHHHHHhccccccCCeEEEEECCCCCCccHHHH
Confidence 9877643 2222 33 24454443 223334 6788899999999998888889999999999999764444444
Q ss_pred HHHHHHHHHhcCCceEEEeecccchHHHHHHhhcCCCCCCCcccccCCCCCCeEEEECCccccceEEecCCCchhHHHHH
Q 006122 184 LGLLKKIQRCRSDLRLIISSATIEAKSMSAFFHARKGRRGLEGVELVPRLEPAILSVEGRGFNVQIHYVEEPVSDYVQAA 263 (660)
Q Consensus 184 l~~l~~~~~~~~~~kii~~SAT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~ 263 (660)
...+.... .+++.++|+||||++.. ...+... .+..+.+... +| .......
T Consensus 297 ~~~i~~~l-~~~~~q~il~SAT~~~~-~~~~~~~----------------~~~~~~v~~~-~~------~~~~~~l---- 347 (618)
T 2whx_A 297 RGYISTRV-EMGEAAAIFMTATPPGS-TDPFPQS----------------NSPIEDIERE-IP------ERSWNTG---- 347 (618)
T ss_dssp HHHHHHHH-HHTSCEEEEECSSCTTC-CCSSCCC----------------SSCEEEEECC-CC------SSCCSSS----
T ss_pred HHHHHHHh-cccCccEEEEECCCchh-hhhhhcc----------------CCceeeeccc-CC------HHHHHHH----
Confidence 44444433 23689999999999543 1111111 1113333222 11 1111111
Q ss_pred HHHHHHHHhcCCCCcEEEEcCCHHHHHHHHHHHHHHhhhccCCCCCeEEEEccCCCCHHHHhhhcCCCCCCCcEEEEeCC
Q 006122 264 VSTVLLIHDKEPPGDILVFLTGQDDIDATIQLLTEEARTSKKNSSGLIILPLYSGLSRAEQEQVFSPTPRGKRKVVISTN 343 (660)
Q Consensus 264 ~~~~~~~~~~~~~~~iLVF~~~~~~i~~l~~~L~~~~~~~~~~~~~~~v~~lh~~l~~~~r~~v~~~f~~g~~~vlvaT~ 343 (660)
...+ . ...+++||||+++++++.+++.|.+. ++.+..+||. +|.++++.|++|+.+|||||+
T Consensus 348 l~~l----~-~~~~~~LVF~~s~~~a~~l~~~L~~~---------g~~v~~lhg~----~R~~~l~~F~~g~~~VLVaTd 409 (618)
T 2whx_A 348 FDWI----T-DYQGKTVWFVPSIKAGNDIANCLRKS---------GKRVIQLSRK----TFDTEYPKTKLTDWDFVVTTD 409 (618)
T ss_dssp CHHH----H-HCCSCEEEECSSHHHHHHHHHHHHHT---------TCCEEEECTT----THHHHTTHHHHSCCSEEEECG
T ss_pred HHHH----H-hCCCCEEEEECChhHHHHHHHHHHHc---------CCcEEEEChH----HHHHHHHhhcCCCcEEEEECc
Confidence 1111 1 13678999999999999999999876 6789999984 788899999999999999999
Q ss_pred CcccccCCCCeEEEEeCCCccceee--cCCCCcccceeeecCHHhHHHhhcccCCC--CCcEEEEccC
Q 006122 344 IAETSLTLEGIVYVVDSGFSKQRFY--NPISDIENLVVAPISKASARQRAGRAGRV--RPGKCYRLYT 407 (660)
Q Consensus 344 i~e~Gidip~v~~VId~g~~k~~~~--~~~~~~~~l~~~~~s~~~~~QR~GRaGR~--~~G~~~~l~~ 407 (660)
++++|||+| +++|||+|+.+.+.+ +...++......|.|.++|.||+|||||. ++|.||.+++
T Consensus 410 v~~rGiDi~-v~~VId~g~~~~P~~~~~~~~~~~i~~d~P~s~~~yiQR~GRaGR~g~~~G~ai~l~~ 476 (618)
T 2whx_A 410 ISEMGANFR-AGRVIDPRRCLKPVILTDGPERVILAGPIPVTPASAAQRRGRIGRNPAQEDDQYVFSG 476 (618)
T ss_dssp GGGTTCCCC-CSEEEECCEEEEEEEECSSSCEEEEEEEEECCHHHHHHHHTTSSCCTTCCCEEEEECS
T ss_pred HHHcCcccC-ceEEEECcceecceecccCCCceEEcccccCCHHHHHHhccccCCCCCCCCeEEEEcc
Confidence 999999998 999999999877665 44445556667799999999999999999 3899999997
No 25
>2z83_A Helicase/nucleoside triphosphatase; hydrolase, membrane, nucleotide-binding, RNA replication, transmembrane, viral protein; 1.80A {Japanese encephalitis virus} PDB: 2v8o_A 2qeq_A
Probab=100.00 E-value=4.9e-37 Score=334.41 Aligned_cols=293 Identities=19% Similarity=0.224 Sum_probs=202.0
Q ss_pred HHHHhcCCEEEEEcCCCCcHHHHHHHHHHhccccCCCeEEEEeCchHHHHHHHHHHHHHHhCCeeeeEEeeeeeccc-cC
Q 006122 59 LYLVETHATTIIVGETGSGKTTQIPQYLKEAGWADGGRVIACTQPRRLAVQAVASRVAEEMGVKVGEEVGYTIRFED-FT 137 (660)
Q Consensus 59 ~~~l~~~~~vii~apTGsGKT~~ip~~l~~~~~~~~~~~i~v~p~r~la~~~~~~~~~~~~~~~~~~~vg~~~~~~~-~~ 137 (660)
.+++.++++++++||||||||++....++......+.++++++|+|+|+.|. ++++. +.. +++...... ..
T Consensus 15 ~~~l~~~~~vlv~a~TGsGKT~~~~l~il~~~~~~~~~~lvl~Ptr~La~Q~-~~~l~---g~~----v~~~~~~~~~~~ 86 (459)
T 2z83_A 15 PNMLRKRQMTVLDLHPGSGKTRKILPQIIKDAIQQRLRTAVLAPTRVVAAEM-AEALR---GLP----VRYQTSAVQREH 86 (459)
T ss_dssp CGGGSTTCEEEECCCTTSCTTTTHHHHHHHHHHHTTCCEEEEECSHHHHHHH-HHHTT---TSC----EEECC-------
T ss_pred HHHHhcCCcEEEECCCCCCHHHHHHHHHHHHHHhCCCcEEEECchHHHHHHH-HHHhc---Cce----EeEEecccccCC
Confidence 5567889999999999999995432222222223456789999998887764 33332 322 222222111 11
Q ss_pred CCCCceEEEechHHHHHHHhcCCCCCCCcEEEEeCCCcCCcChhHHHHHHHHHHHhcCCceEEEeecccchHHHHHHhhc
Q 006122 138 NKDLTAIKFLTDGVLLREMMDDPLLTKYSVIMVDEAHERSISTDILLGLLKKIQRCRSDLRLIISSATIEAKSMSAFFHA 217 (660)
Q Consensus 138 ~~~~~~I~v~T~~~ll~~l~~~~~l~~~~~iIiDE~Her~~~~d~ll~~l~~~~~~~~~~kii~~SAT~~~~~~~~~~~~ 217 (660)
.+ ...+.++|.+.+.+.+..++.+.++++|||||||+++...++....+..... .++.++|+||||++.+. ..+...
T Consensus 87 t~-~~~i~~~~~~~l~~~l~~~~~l~~~~~iViDEaH~~~~~~~~~~~~~~~~~~-~~~~~~il~SAT~~~~~-~~~~~~ 163 (459)
T 2z83_A 87 QG-NEIVDVMCHATLTHRLMSPNRVPNYNLFVMDEAHFTDPASIAARGYIATKVE-LGEAAAIFMTATPPGTT-DPFPDS 163 (459)
T ss_dssp -C-CCSEEEEEHHHHHHHHHSCC-CCCCSEEEESSTTCCSHHHHHHHHHHHHHHH-TTSCEEEEECSSCTTCC-CSSCCC
T ss_pred CC-CcEEEEEchHHHHHHhhccccccCCcEEEEECCccCCchhhHHHHHHHHHhc-cCCccEEEEEcCCCcch-hhhccC
Confidence 23 5678899999999999888889999999999999887666666666666543 46899999999996431 000000
Q ss_pred CCCCCCCcccccCCCCCCeEEEECCccccceEEecCCCchhHHHHHHHHHHHHHhcCCCCcEEEEcCCHHHHHHHHHHHH
Q 006122 218 RKGRRGLEGVELVPRLEPAILSVEGRGFNVQIHYVEEPVSDYVQAAVSTVLLIHDKEPPGDILVFLTGQDDIDATIQLLT 297 (660)
Q Consensus 218 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iLVF~~~~~~i~~l~~~L~ 297 (660)
..++..+.. ..+... ..... ..+ . ..++++||||+++++++.+++.|.
T Consensus 164 ----------------~~pi~~~~~-~~~~~~------~~~~~----~~l----~-~~~~~~LVF~~s~~~~~~l~~~L~ 211 (459)
T 2z83_A 164 ----------------NAPIHDLQD-EIPDRA------WSSGY----EWI----T-EYAGKTVWFVASVKMGNEIAMCLQ 211 (459)
T ss_dssp ----------------SSCEEEEEC-CCCSSC------CSSCC----HHH----H-HCCSCEEEECSCHHHHHHHHHHHH
T ss_pred ----------------CCCeEEecc-cCCcch------hHHHH----HHH----H-hcCCCEEEEeCChHHHHHHHHHHH
Confidence 111222211 111110 00101 111 1 136789999999999999999998
Q ss_pred HHhhhccCCCCCeEEEEccCCCCHHHHhhhcCCCCCCCcEEEEeCCCcccccCCCCeEEEEeCCCccceeecCCCCcccc
Q 006122 298 EEARTSKKNSSGLIILPLYSGLSRAEQEQVFSPTPRGKRKVVISTNIAETSLTLEGIVYVVDSGFSKQRFYNPISDIENL 377 (660)
Q Consensus 298 ~~~~~~~~~~~~~~v~~lh~~l~~~~r~~v~~~f~~g~~~vlvaT~i~e~Gidip~v~~VId~g~~k~~~~~~~~~~~~l 377 (660)
+. ++.+..+||. +|.++++.|++|+++|||||+++++|||+|+ ++|||+|..+.+.++. .+...+
T Consensus 212 ~~---------g~~v~~lh~~----~R~~~~~~f~~g~~~iLVaT~v~~~GiDip~-~~VI~~G~~~~~~~~~-~~~~~~ 276 (459)
T 2z83_A 212 RA---------GKKVIQLNRK----SYDTEYPKCKNGDWDFVITTDISEMGANFGA-SRVIDCRKSVKPTILE-EGEGRV 276 (459)
T ss_dssp HT---------TCCEEEESTT----CCCCCGGGSSSCCCSEEEESSCC---CCCSC-SEEEECCEECCEEEEC-SSSCEE
T ss_pred hc---------CCcEEecCHH----HHHHHHhhccCCCceEEEECChHHhCeecCC-CEEEECCccccccccc-cccccc
Confidence 75 6788999985 7889999999999999999999999999999 9999999888777652 233333
Q ss_pred ---eeeecCHHhHHHhhcccCCC-C-CcEEEEccChH
Q 006122 378 ---VVAPISKASARQRAGRAGRV-R-PGKCYRLYTEE 409 (660)
Q Consensus 378 ---~~~~~s~~~~~QR~GRaGR~-~-~G~~~~l~~~~ 409 (660)
...|.|.++|.||+|||||. . +|.||.++++.
T Consensus 277 ~~~~d~p~s~~~~~QR~GRaGR~g~~~G~~~~~~~~~ 313 (459)
T 2z83_A 277 ILGNPSPITSASAAQRRGRVGRNPNQVGDEYHYGGAT 313 (459)
T ss_dssp EECSCEECCHHHHHHHHTTSSCCTTCCCEEEEECSCC
T ss_pred ccccCCCCCHHHHHHhccccCCCCCCCCeEEEEEccc
Confidence 33799999999999999999 3 99999999875
No 26
>2xgj_A ATP-dependent RNA helicase DOB1; hydrolase-RNA complex, hydrolase, tramp, exosome, DEAD, nucleotide-binding; HET: ADP; 2.90A {Saccharomyces cerevisiae}
Probab=100.00 E-value=4.4e-36 Score=352.58 Aligned_cols=333 Identities=17% Similarity=0.161 Sum_probs=231.1
Q ss_pred HhcCCCcHHHHHHHHHHHhcCCEEEEEcCCCCcHHHHHHHHHHhccccCCCeEEEEeCchHHHHHHHHHHHHHHhCCeee
Q 006122 45 QRQRLPVYKYRTAILYLVETHATTIIVGETGSGKTTQIPQYLKEAGWADGGRVIACTQPRRLAVQAVASRVAEEMGVKVG 124 (660)
Q Consensus 45 ~~~~lPi~~~~~~i~~~l~~~~~vii~apTGsGKT~~ip~~l~~~~~~~~~~~i~v~p~r~la~~~~~~~~~~~~~~~~~ 124 (660)
....+.++++|.+++.++.++++++|+||||||||++....+... ...+.+++|++|+++|+.|. .+.+.+.++ .+|
T Consensus 81 ~~~~f~L~~~Q~eai~~l~~g~~vLV~apTGSGKTlva~lai~~~-l~~g~rvL~l~PtkaLa~Q~-~~~l~~~~~-~vg 157 (1010)
T 2xgj_A 81 RTYPFTLDPFQDTAISCIDRGESVLVSAHTSAGKTVVAEYAIAQS-LKNKQRVIYTSPIKALSNQK-YRELLAEFG-DVG 157 (1010)
T ss_dssp CCCSSCCCHHHHHHHHHHHHTCEEEEECCTTSCHHHHHHHHHHHH-HHTTCEEEEEESSHHHHHHH-HHHHHHHHS-CEE
T ss_pred HhCCCCCCHHHHHHHHHHHcCCCEEEECCCCCChHHHHHHHHHHH-hccCCeEEEECChHHHHHHH-HHHHHHHhC-CEE
Confidence 334556999999999999999999999999999996543333332 23567899999999998865 444555555 666
Q ss_pred eEEeeeeeccccCCCCCceEEEechHHHHHHHhcCC-CCCCCcEEEEeCCCcCCcChhHHHHHHHHHHHhcCCceEEEee
Q 006122 125 EEVGYTIRFEDFTNKDLTAIKFLTDGVLLREMMDDP-LLTKYSVIMVDEAHERSISTDILLGLLKKIQRCRSDLRLIISS 203 (660)
Q Consensus 125 ~~vg~~~~~~~~~~~~~~~I~v~T~~~ll~~l~~~~-~l~~~~~iIiDE~Her~~~~d~ll~~l~~~~~~~~~~kii~~S 203 (660)
..+|... ... .++|+|+||++|.+.+..+. .+.++++|||||+|. ..+.+....+-..+...+++.++|+||
T Consensus 158 lltGd~~-----~~~-~~~IvV~Tpe~L~~~L~~~~~~l~~l~lVViDEaH~-l~d~~rg~~~e~il~~l~~~~~il~LS 230 (1010)
T 2xgj_A 158 LMTGDIT-----INP-DAGCLVMTTEILRSMLYRGSEVMREVAWVIFDEVHY-MRDKERGVVWEETIILLPDKVRYVFLS 230 (1010)
T ss_dssp EECSSCE-----ECT-TCSEEEEEHHHHHHHHHHTCTTGGGEEEEEEETGGG-GGCTTTHHHHHHHHHHSCTTCEEEEEE
T ss_pred EEeCCCc-----cCC-CCCEEEEcHHHHHHHHHcCcchhhcCCEEEEechhh-hcccchhHHHHHHHHhcCCCCeEEEEc
Confidence 6666321 223 68999999999998876654 489999999999993 333322222222233456789999999
Q ss_pred ccc-chHHHHHHhhcCCCCCCCcccccCCCCCCeEEEECCccccceEEecCCC----------ch-----hHH-------
Q 006122 204 ATI-EAKSMSAFFHARKGRRGLEGVELVPRLEPAILSVEGRGFNVQIHYVEEP----------VS-----DYV------- 260 (660)
Q Consensus 204 AT~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~----------~~-----~~~------- 260 (660)
||+ +...+++|++..... ...++..+.+..|++.++.... .. .+.
T Consensus 231 ATi~n~~e~a~~l~~~~~~------------~~~vi~~~~rp~pl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ 298 (1010)
T 2xgj_A 231 ATIPNAMEFAEWICKIHSQ------------PCHIVYTNFRPTPLQHYLFPAHGDGIYLVVDEKSTFREENFQKAMASIS 298 (1010)
T ss_dssp CCCTTHHHHHHHHHHHHTS------------CEEEEEECCCSSCEEEEEEETTSSCCEEEECTTCCBCHHHHHHHHHTCC
T ss_pred CCCCCHHHHHHHHHhhcCC------------CeEEEecCCCcccceEEEEecCCcceeeeeccccccchHHHHHHHHHHh
Confidence 999 788899998642100 1113444455555544433211 00 000
Q ss_pred -----------------------------HHHHHHHHHHHhcCCCCcEEEEcCCHHHHHHHHHHHHHHhh----------
Q 006122 261 -----------------------------QAAVSTVLLIHDKEPPGDILVFLTGQDDIDATIQLLTEEAR---------- 301 (660)
Q Consensus 261 -----------------------------~~~~~~~~~~~~~~~~~~iLVF~~~~~~i~~l~~~L~~~~~---------- 301 (660)
...+..+.........+++|||+++++.++.+++.|.+...
T Consensus 299 ~~~~~~~~~~~~~g~~~~~~k~~~~~~~~~~~l~~l~~~l~~~~~~~~IVF~~sr~~~e~la~~L~~~~~~~~~e~~~i~ 378 (1010)
T 2xgj_A 299 NQIGDDPNSTDSRGKKGQTYKGGSAKGDAKGDIYKIVKMIWKKKYNPVIVFSFSKRDCEELALKMSKLDFNSDDEKEALT 378 (1010)
T ss_dssp ------------------------------CHHHHHHHHHHHHTCCSEEEEESSHHHHHHHHHTTTTSCCCCHHHHHHHH
T ss_pred hhhcccccccccccccccccccccccccchHHHHHHHHHHHhcCCCCEEEEECCHHHHHHHHHHHHhCCCCChHHHHHHH
Confidence 11122233333334556899999999999999988854100
Q ss_pred --------hccCCCC------------CeEEEEccCCCCHHHHhhhcCCCCCCCcEEEEeCCCcccccCCCCeEEEEeCC
Q 006122 302 --------TSKKNSS------------GLIILPLYSGLSRAEQEQVFSPTPRGKRKVVISTNIAETSLTLEGIVYVVDSG 361 (660)
Q Consensus 302 --------~~~~~~~------------~~~v~~lh~~l~~~~r~~v~~~f~~g~~~vlvaT~i~e~Gidip~v~~VId~g 361 (660)
.+..... ...|.+|||+|++.+|..+++.|++|.++|||||+++++|||+|++++||+.
T Consensus 379 ~~~~~~~~~l~~~d~~l~~~~~l~~~l~~gI~~~Hggl~~~eR~~ve~~F~~G~ikVLVAT~~la~GIDiP~~~vVI~~- 457 (1010)
T 2xgj_A 379 KIFNNAIALLPETDRELPQIKHILPLLRRGIGIHHSGLLPILKEVIEILFQEGFLKVLFATETFSIGLNMPAKTVVFTS- 457 (1010)
T ss_dssp HHHHHHHTTSCGGGTTCHHHHHHHHHHHHTEEEESTTSCHHHHHHHHHHHHTTCCSEEEEEGGGGGSTTCCBSEEEESC-
T ss_pred HHHHHHHHhcchhhhcchhHHHHHHHHhCCeeEECCCCCHHHHHHHHHHHhcCCCcEEEEehHhhccCCCCCceEEEeC-
Confidence 0000000 1238999999999999999999999999999999999999999999999973
Q ss_pred CccceeecCCCCcccceeeecCHHhHHHhhcccCCCC---CcEEEEccChH
Q 006122 362 FSKQRFYNPISDIENLVVAPISKASARQRAGRAGRVR---PGKCYRLYTEE 409 (660)
Q Consensus 362 ~~k~~~~~~~~~~~~l~~~~~s~~~~~QR~GRaGR~~---~G~~~~l~~~~ 409 (660)
...||... ..|.|..+|.||+|||||.+ .|.||.++++.
T Consensus 458 ---~~kfd~~~------~rp~s~~~y~Qr~GRAGR~G~d~~G~vi~l~~~~ 499 (1010)
T 2xgj_A 458 ---VRKWDGQQ------FRWVSGGEYIQMSGRAGRRGLDDRGIVIMMIDEK 499 (1010)
T ss_dssp ---SEEECSSC------EEECCHHHHHHHHTTBCCTTTCSSEEEEEEECSC
T ss_pred ---CcccCCcC------CccCCHHHHhHhhhhcccCCCCCceEEEEEECCC
Confidence 22355432 24899999999999999984 59999999754
No 27
>2z0m_A 337AA long hypothetical ATP-dependent RNA helicase DEAD; ATP-binding, hydrolase, nucleotide-binding, RNA binding protein, structural genomics; 1.90A {Sulfolobus tokodaii}
Probab=100.00 E-value=3.2e-36 Score=315.51 Aligned_cols=302 Identities=19% Similarity=0.232 Sum_probs=214.9
Q ss_pred hcCCCcHHHHHHHHHHHhcCCEEEEEcCCCCcHHHHHHHHHHhccccCCCeEEEEeCchHHHHHHHHHHHHH---HhCCe
Q 006122 46 RQRLPVYKYRTAILYLVETHATTIIVGETGSGKTTQIPQYLKEAGWADGGRVIACTQPRRLAVQAVASRVAE---EMGVK 122 (660)
Q Consensus 46 ~~~lPi~~~~~~i~~~l~~~~~vii~apTGsGKT~~ip~~l~~~~~~~~~~~i~v~p~r~la~~~~~~~~~~---~~~~~ 122 (660)
...-..+++|.++++.+.+++++++.+|||+|||......+... +.++++++|++.|+.|. .+++.+ ..+..
T Consensus 12 ~g~~~l~~~Q~~~i~~i~~~~~~lv~~~TGsGKT~~~~~~~~~~----~~~~liv~P~~~L~~q~-~~~~~~~~~~~~~~ 86 (337)
T 2z0m_A 12 MGFKNFTEVQSKTIPLMLQGKNVVVRAKTGSGKTAAYAIPILEL----GMKSLVVTPTRELTRQV-ASHIRDIGRYMDTK 86 (337)
T ss_dssp TTCCSCCHHHHHHHHHHHTTCCEEEECCTTSSHHHHHHHHHHHH----TCCEEEECSSHHHHHHH-HHHHHHHTTTSCCC
T ss_pred cCCCCCCHHHHHHHHHHhcCCCEEEEcCCCCcHHHHHHHHHHhh----cCCEEEEeCCHHHHHHH-HHHHHHHhhhcCCc
Confidence 33445788999999999999999999999999996555555443 45689999998887763 333333 33556
Q ss_pred eeeEEeeeeecccc-CCCCCceEEEechHHHHHHHhcCCC-CCCCcEEEEeCCCcCCcChhHHHHHHHHHHHhcCCceEE
Q 006122 123 VGEEVGYTIRFEDF-TNKDLTAIKFLTDGVLLREMMDDPL-LTKYSVIMVDEAHERSISTDILLGLLKKIQRCRSDLRLI 200 (660)
Q Consensus 123 ~~~~vg~~~~~~~~-~~~~~~~I~v~T~~~ll~~l~~~~~-l~~~~~iIiDE~Her~~~~d~ll~~l~~~~~~~~~~kii 200 (660)
++...|.....+.. ... ..+|+|+||+.|.+.+..... +.++++||+||||.. .+..+...+...+.......+++
T Consensus 87 ~~~~~~~~~~~~~~~~~~-~~~i~v~T~~~l~~~~~~~~~~~~~~~~iViDEah~~-~~~~~~~~~~~~~~~~~~~~~~~ 164 (337)
T 2z0m_A 87 VAEVYGGMPYKAQINRVR-NADIVVATPGRLLDLWSKGVIDLSSFEIVIIDEADLM-FEMGFIDDIKIILAQTSNRKITG 164 (337)
T ss_dssp EEEECTTSCHHHHHHHHT-TCSEEEECHHHHHHHHHTTSCCGGGCSEEEEESHHHH-HHTTCHHHHHHHHHHCTTCSEEE
T ss_pred EEEEECCcchHHHHhhcC-CCCEEEECHHHHHHHHHcCCcchhhCcEEEEEChHHh-hccccHHHHHHHHhhCCcccEEE
Confidence 65555532211111 112 578999999999998876554 788999999999942 22222222233333345567888
Q ss_pred EeecccchH---HHHHHhhcCCCCCCCcccccCCCCCCeEEEECCccccceEEecCCCchhHHHHHHHHHHHHHhcCCCC
Q 006122 201 ISSATIEAK---SMSAFFHARKGRRGLEGVELVPRLEPAILSVEGRGFNVQIHYVEEPVSDYVQAAVSTVLLIHDKEPPG 277 (660)
Q Consensus 201 ~~SAT~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 277 (660)
++|||++.. .+..++.... .+.......++...+....... ... ........++
T Consensus 165 ~~SAT~~~~~~~~~~~~~~~~~-----------------~~~~~~~~~~~~~~~~~~~~~~--~~~----~~~~~~~~~~ 221 (337)
T 2z0m_A 165 LFSATIPEEIRKVVKDFITNYE-----------------EIEACIGLANVEHKFVHVKDDW--RSK----VQALRENKDK 221 (337)
T ss_dssp EEESCCCHHHHHHHHHHSCSCE-----------------EEECSGGGGGEEEEEEECSSSS--HHH----HHHHHTCCCS
T ss_pred EEeCcCCHHHHHHHHHhcCCce-----------------eeecccccCCceEEEEEeChHH--HHH----HHHHHhCCCC
Confidence 999999554 3445544322 2222222233333333222211 111 1233446778
Q ss_pred cEEEEcCCHHHHHHHHHHHHHHhhhccCCCCCeEEEEccCCCCHHHHhhhcCCCCCCCcEEEEeCCCcccccCCCCeEEE
Q 006122 278 DILVFLTGQDDIDATIQLLTEEARTSKKNSSGLIILPLYSGLSRAEQEQVFSPTPRGKRKVVISTNIAETSLTLEGIVYV 357 (660)
Q Consensus 278 ~iLVF~~~~~~i~~l~~~L~~~~~~~~~~~~~~~v~~lh~~l~~~~r~~v~~~f~~g~~~vlvaT~i~e~Gidip~v~~V 357 (660)
++||||+++++++.+++.|. .+..+||+++.++|.++++.|++|+.+|||||+++++|+|+|++++|
T Consensus 222 ~~lvf~~~~~~~~~l~~~l~-------------~~~~~~~~~~~~~r~~~~~~f~~~~~~vlv~T~~~~~Gid~~~~~~V 288 (337)
T 2z0m_A 222 GVIVFVRTRNRVAKLVRLFD-------------NAIELRGDLPQSVRNRNIDAFREGEYDMLITTDVASRGLDIPLVEKV 288 (337)
T ss_dssp SEEEECSCHHHHHHHHTTCT-------------TEEEECTTSCHHHHHHHHHHHHTTSCSEEEECHHHHTTCCCCCBSEE
T ss_pred cEEEEEcCHHHHHHHHHHhh-------------hhhhhcCCCCHHHHHHHHHHHHcCCCcEEEEcCccccCCCccCCCEE
Confidence 89999999999999887763 36789999999999999999999999999999999999999999999
Q ss_pred EeCCCccceeecCCCCcccceeeecCHHhHHHhhcccCCC-CCcEEEEccCh
Q 006122 358 VDSGFSKQRFYNPISDIENLVVAPISKASARQRAGRAGRV-RPGKCYRLYTE 408 (660)
Q Consensus 358 Id~g~~k~~~~~~~~~~~~l~~~~~s~~~~~QR~GRaGR~-~~G~~~~l~~~ 408 (660)
|+++. |.|..+|.||+|||||. ++|.|+.++..
T Consensus 289 i~~~~------------------~~s~~~~~Q~~GR~gR~g~~g~~~~~~~~ 322 (337)
T 2z0m_A 289 INFDA------------------PQDLRTYIHRIGRTGRMGRKGEAITFILN 322 (337)
T ss_dssp EESSC------------------CSSHHHHHHHHTTBCGGGCCEEEEEEESS
T ss_pred EEecC------------------CCCHHHhhHhcCccccCCCCceEEEEEeC
Confidence 99777 78999999999999999 89999999883
No 28
>2jlq_A Serine protease subunit NS3; ribonucleoprotein, nucleotide-binding, viral nucleoprotein, endoplasmic reticulum, helicase, hydrolase; 1.67A {Dengue virus 4} PDB: 2jly_A* 2jls_A* 2jlu_A 2jlv_A* 2jlw_A 2jlx_A* 2jlz_A* 2jlr_A* 2bmf_A 2bhr_A
Probab=100.00 E-value=7.6e-37 Score=332.37 Aligned_cols=292 Identities=17% Similarity=0.212 Sum_probs=206.5
Q ss_pred HHHHHHhcCCEEEEEcCCCCcHHH--HHHHHHHhccccCCCeEEEEeCchHHHHHHHHHHHHHHhCCeeeeEEeeeeecc
Q 006122 57 AILYLVETHATTIIVGETGSGKTT--QIPQYLKEAGWADGGRVIACTQPRRLAVQAVASRVAEEMGVKVGEEVGYTIRFE 134 (660)
Q Consensus 57 ~i~~~l~~~~~vii~apTGsGKT~--~ip~~l~~~~~~~~~~~i~v~p~r~la~~~~~~~~~~~~~~~~~~~vg~~~~~~ 134 (660)
.|...+.++++++++||||||||+ ++|. +... ...+.++++++|+|+|+.|... .+. +. .+++.....
T Consensus 11 ~i~~~l~~~~~~lv~a~TGsGKT~~~~~~~-l~~~-~~~~~~~lvl~Ptr~La~Q~~~-~l~---g~----~v~~~~~~~ 80 (451)
T 2jlq_A 11 VDEDIFRKKRLTIMDLHPGAGKTKRILPSI-VREA-LLRRLRTLILAPTRVVAAEMEE-ALR---GL----PIRYQTPAV 80 (451)
T ss_dssp CCGGGGSTTCEEEECCCTTSSCCTTHHHHH-HHHH-HHTTCCEEEEESSHHHHHHHHH-HTT---TS----CEEECCTTC
T ss_pred HHHHHHhcCCeEEEECCCCCCHhhHHHHHH-HHHH-HhcCCcEEEECCCHHHHHHHHH-Hhc---Cc----eeeeeeccc
Confidence 345556677778999999999995 4443 3222 2345678999999988776432 221 22 334444333
Q ss_pred ccCCCCCceEEEechHHHHHHHhcCCCCCCCcEEEEeCCCcCCcChhHHHHHHHHHHHhcCCceEEEeecccchHHHHHH
Q 006122 135 DFTNKDLTAIKFLTDGVLLREMMDDPLLTKYSVIMVDEAHERSISTDILLGLLKKIQRCRSDLRLIISSATIEAKSMSAF 214 (660)
Q Consensus 135 ~~~~~~~~~I~v~T~~~ll~~l~~~~~l~~~~~iIiDE~Her~~~~d~ll~~l~~~~~~~~~~kii~~SAT~~~~~~~~~ 214 (660)
.........|.++|++.+.+.+...+.+.++++|||||||+++...+.....+... ...++.++|+||||++......+
T Consensus 81 ~~~~~~~~~i~~~t~~~l~~~l~~~~~l~~~~~iViDEah~~~~~~~~~~~~~~~~-~~~~~~~~i~~SAT~~~~~~~~~ 159 (451)
T 2jlq_A 81 KSDHTGREIVDLMCHATFTTRLLSSTRVPNYNLIVMDEAHFTDPCSVAARGYISTR-VEMGEAAAIFMTATPPGSTDPFP 159 (451)
T ss_dssp SCCCCSSCCEEEEEHHHHHHHHHHCSCCCCCSEEEEETTTCCSHHHHHHHHHHHHH-HHTTSCEEEEECSSCTTCCCSSC
T ss_pred cccCCCCceEEEEChHHHHHHhhCcccccCCCEEEEeCCccCCcchHHHHHHHHHh-hcCCCceEEEEccCCCccchhhh
Confidence 22222267899999999999998888899999999999997644444444444322 24568999999999965322211
Q ss_pred hhcCCCCCCCcccccCCCCCCeEEEECCccccceEEecCCCchhHHHHHHHHHHHHHhcCCCCcEEEEcCCHHHHHHHHH
Q 006122 215 FHARKGRRGLEGVELVPRLEPAILSVEGRGFNVQIHYVEEPVSDYVQAAVSTVLLIHDKEPPGDILVFLTGQDDIDATIQ 294 (660)
Q Consensus 215 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iLVF~~~~~~i~~l~~ 294 (660)
+.. +.++.+. +..|... |.. ..+. + . ...+++||||+++++++.+++
T Consensus 160 ~~~-----------------~~~~~~~-~~~p~~~-~~~--~~~~-------l----~-~~~~~~lVF~~s~~~a~~l~~ 206 (451)
T 2jlq_A 160 QSN-----------------SPIEDIE-REIPERS-WNT--GFDW-------I----T-DYQGKTVWFVPSIKAGNDIAN 206 (451)
T ss_dssp CCS-----------------SCEEEEE-CCCCSSC-CSS--SCHH-------H----H-HCCSCEEEECSSHHHHHHHHH
T ss_pred cCC-----------------CceEecC-ccCCchh-hHH--HHHH-------H----H-hCCCCEEEEcCCHHHHHHHHH
Confidence 111 1133322 2222111 110 0011 1 1 135689999999999999999
Q ss_pred HHHHHhhhccCCCCCeEEEEccCCCCHHHHhhhcCCCCCCCcEEEEeCCCcccccCCCCeEEEEeCCCccceeecCCCCc
Q 006122 295 LLTEEARTSKKNSSGLIILPLYSGLSRAEQEQVFSPTPRGKRKVVISTNIAETSLTLEGIVYVVDSGFSKQRFYNPISDI 374 (660)
Q Consensus 295 ~L~~~~~~~~~~~~~~~v~~lh~~l~~~~r~~v~~~f~~g~~~vlvaT~i~e~Gidip~v~~VId~g~~k~~~~~~~~~~ 374 (660)
.|.+. ++.+..+||.+ +.++++.|++|+.+|||||+++++|||+|+ ++|||+|+.+...|| ..+.
T Consensus 207 ~L~~~---------g~~~~~lh~~~----~~~~~~~f~~g~~~vLVaT~v~~~GiDip~-~~VI~~~~~~~~~~d-~~~~ 271 (451)
T 2jlq_A 207 CLRKS---------GKRVIQLSRKT----FDTEYPKTKLTDWDFVVTTDISEMGANFRA-GRVIDPRRCLKPVIL-TDGP 271 (451)
T ss_dssp HHHTT---------TCCEEEECTTT----HHHHGGGGGSSCCSEEEECGGGGSSCCCCC-SEEEECCEEEEEEEE-CSSS
T ss_pred HHHHc---------CCeEEECCHHH----HHHHHHhhccCCceEEEECCHHHhCcCCCC-CEEEECCCccccccc-cccc
Confidence 99764 67788999975 457899999999999999999999999999 999999999999998 5566
Q ss_pred cccee---eecCHHhHHHhhcccCCCC--CcEEEEccC
Q 006122 375 ENLVV---APISKASARQRAGRAGRVR--PGKCYRLYT 407 (660)
Q Consensus 375 ~~l~~---~~~s~~~~~QR~GRaGR~~--~G~~~~l~~ 407 (660)
..+.. .|.|.++|.||+|||||.+ +|.||.++.
T Consensus 272 ~~l~~~~~~p~s~~~y~Qr~GRaGR~g~~~g~~~~~~~ 309 (451)
T 2jlq_A 272 ERVILAGPIPVTPASAAQRRGRIGRNPAQEDDQYVFSG 309 (451)
T ss_dssp CEEEEEEEEECCHHHHHHHHTTSSCCTTCCCEEEEECS
T ss_pred ceeeecccccCCHHHHHHhccccCCCCCCCccEEEEeC
Confidence 66665 7999999999999999994 899988865
No 29
>2ykg_A Probable ATP-dependent RNA helicase DDX58; hydrolase, innate immunity; 2.50A {Homo sapiens} PDB: 3tmi_A*
Probab=100.00 E-value=2.9e-36 Score=347.20 Aligned_cols=362 Identities=16% Similarity=0.181 Sum_probs=191.9
Q ss_pred CCcHHHHHHHHHHHhcCCEEEEEcCCCCcHHHHHHHHHHhccc----cCCCeEEEEeCchHHHHHHHHHHHHHH---hCC
Q 006122 49 LPVYKYRTAILYLVETHATTIIVGETGSGKTTQIPQYLKEAGW----ADGGRVIACTQPRRLAVQAVASRVAEE---MGV 121 (660)
Q Consensus 49 lPi~~~~~~i~~~l~~~~~vii~apTGsGKT~~ip~~l~~~~~----~~~~~~i~v~p~r~la~~~~~~~~~~~---~~~ 121 (660)
...+++|.+++..+..++++|+++|||||||++....+..... ..++++++++|++.|+.|.. +.+.+. .+.
T Consensus 12 ~~lr~~Q~~~i~~~l~g~~~iv~~~TGsGKTl~~~~~i~~~l~~~~~~~~~~~lvl~Pt~~L~~Q~~-~~~~~~~~~~~~ 90 (696)
T 2ykg_A 12 FKPRNYQLELALPAMKGKNTIICAPTGCGKTFVSLLICEHHLKKFPQGQKGKVVFFANQIPVYEQNK-SVFSKYFERHGY 90 (696)
T ss_dssp -CCCHHHHHHHHHHHTTCCEEEECCTTSSHHHHHHHHHHHHHHHSCTTCCCCEEEECSSHHHHHHHH-HHHHHHTTTTTC
T ss_pred CCccHHHHHHHHHHHcCCCEEEEcCCCchHHHHHHHHHHHHHHhCccCCCCeEEEEECCHHHHHHHH-HHHHHHhccCCc
Confidence 3468899999999989999999999999999655444433211 12367899999999988643 333333 367
Q ss_pred eeeeEEeeeeecccc--CCCCCceEEEechHHHHHHHhcCCC--CCCCcEEEEeCCCcCCcChhHHHHHHHHHHH-----
Q 006122 122 KVGEEVGYTIRFEDF--TNKDLTAIKFLTDGVLLREMMDDPL--LTKYSVIMVDEAHERSISTDILLGLLKKIQR----- 192 (660)
Q Consensus 122 ~~~~~vg~~~~~~~~--~~~~~~~I~v~T~~~ll~~l~~~~~--l~~~~~iIiDE~Her~~~~d~ll~~l~~~~~----- 192 (660)
.++..+|........ ... .++|+|+||++|++.+..+.. +.++++|||||||+..-...+...+.+.+..
T Consensus 91 ~v~~~~g~~~~~~~~~~~~~-~~~Iiv~Tp~~L~~~l~~~~~~~l~~~~~vViDEaH~~~~~~~~~~i~~~~l~~~~~~~ 169 (696)
T 2ykg_A 91 RVTGISGATAENVPVEQIVE-NNDIIILTPQILVNNLKKGTIPSLSIFTLMIFDECHNTSKQHPYNMIMFNYLDQKLGGS 169 (696)
T ss_dssp CEEEECSSSCSSSCHHHHHH-TCSEEEECHHHHHHHHHTTSSCCGGGCSEEEEETGGGCSTTCHHHHHHHHHHHHHHTTC
T ss_pred eEEEEeCCccccccHHHhcc-CCCEEEECHHHHHHHHhcCcccccccccEEEEeCCCcccCcccHHHHHHHHHHHhhccc
Confidence 777777743211110 112 589999999999999877643 7889999999999655443332222222221
Q ss_pred hcCCceEEEeecccc-------hHHH---HHHhhcCCCC---CCCccc---c-cCCCCCCeEEEECCccc-------c--
Q 006122 193 CRSDLRLIISSATIE-------AKSM---SAFFHARKGR---RGLEGV---E-LVPRLEPAILSVEGRGF-------N-- 246 (660)
Q Consensus 193 ~~~~~kii~~SAT~~-------~~~~---~~~~~~~~~~---~~~~~~---~-~~~~~~~~~~~~~~~~~-------~-- 246 (660)
..+..++|+||||+. .+.+ .+++...... ...... . ....+.......+.+.. +
T Consensus 170 ~~~~~~il~LTATp~~~~~~~~~~~~~~i~~~~~~l~~~~~~~~~~~~~~l~~~~~~p~~~~~~~~~~~~~~fs~~~~~l 249 (696)
T 2ykg_A 170 SGPLPQVIGLTASVGVGDAKTTDEALDYICKLCASLDASVIATVKHNLEELEQVVYKPQKFFRKVESRISDKFKYIIAQL 249 (696)
T ss_dssp CSCCCEEEEEESCCCCSSCCSHHHHHHHHHHHHHHTTCCEEECCCTTHHHHHHHSCCCEEEEEECCCCSCCHHHHHHHHH
T ss_pred CCCCCeEEEEeCccccCccccHHHHHHHHHHHHHhcCCceEeecccchHHHHhhcCCCceeEEecCcccCChHHHHHHHH
Confidence 136789999999996 2222 2222111000 000000 0 00000000000000000 0
Q ss_pred --------------------------------------------------------------------------------
Q 006122 247 -------------------------------------------------------------------------------- 246 (660)
Q Consensus 247 -------------------------------------------------------------------------------- 246 (660)
T Consensus 250 ~~~i~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~~~~~~i~~~~ 329 (696)
T 2ykg_A 250 MRDTESLAKRICKDLENLSQIQNREFGTQKYEQWIVTVQKACMVFQMPDKDEESRICKALFLYTSHLRKYNDALIISEHA 329 (696)
T ss_dssp HHHHHHHHHHHSTTGGGSSSCCSCCSSSHHHHHHHHHHHHTSCC------CCHHHHHHHHHHHHHHHHHHHHHHHHHHHS
T ss_pred HHHHHHHHHHHHHHHHHhhccccccccchhHHHHHHHHHHHHHHhhcccchhhhHHHHHHHHHHHHHHHHhHHHhccchh
Confidence
Q ss_pred -----------------------ceEEecC--------------C--CchhHHHHHHHHHHHHHhcCCCCcEEEEcCCHH
Q 006122 247 -----------------------VQIHYVE--------------E--PVSDYVQAAVSTVLLIHDKEPPGDILVFLTGQD 287 (660)
Q Consensus 247 -----------------------v~~~~~~--------------~--~~~~~~~~~~~~~~~~~~~~~~~~iLVF~~~~~ 287 (660)
++..+.. . ............+........++++||||++++
T Consensus 330 ~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~k~~~L~~ll~~~~~~~~~~~~IIF~~~~~ 409 (696)
T 2ykg_A 330 RMKDALDYLKDFFSNVRAAGFDEIEQDLTQRFEEKLQELESVSRDPSNENPKLEDLCFILQEEYHLNPETITILFVKTRA 409 (696)
T ss_dssp CHHHHHHHHHHHHHHHHTTCCCHHHHHHHHHHHTTHHHHHHHHHCGGGCCHHHHHHHHHHHHHHTTCTTCCEEEECSCHH
T ss_pred hHHHHHHHHHHHHHHHhhcccchHHHHHHHHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHhccCCCCcEEEEeCcHH
Confidence 0000000 0 000111111122222222346678999999999
Q ss_pred HHHHHHHHHHHHhhhccCCCCCeEEEEc--------cCCCCHHHHhhhcCCCCC-CCcEEEEeCCCcccccCCCCeEEEE
Q 006122 288 DIDATIQLLTEEARTSKKNSSGLIILPL--------YSGLSRAEQEQVFSPTPR-GKRKVVISTNIAETSLTLEGIVYVV 358 (660)
Q Consensus 288 ~i~~l~~~L~~~~~~~~~~~~~~~v~~l--------h~~l~~~~r~~v~~~f~~-g~~~vlvaT~i~e~Gidip~v~~VI 358 (660)
+++.+++.|.+.. ....+.+..+ ||+|+.++|.++++.|++ |.++|||||+++++|||+|++++||
T Consensus 410 ~~~~l~~~L~~~~-----~~~~~~~~~l~G~~~~~~h~~~~~~eR~~v~~~F~~~g~~~vLVaT~v~~~GiDip~v~~VI 484 (696)
T 2ykg_A 410 LVDALKNWIEGNP-----KLSFLKPGILTGRGKTNQNTGMTLPAQKCILDAFKASGDHNILIATSVADEGIDIAQCNLVI 484 (696)
T ss_dssp HHHHHHHHHHHCT-----TCCSCCEEC-----------------------------CCSCSEEEESSCCC---CCCSEEE
T ss_pred HHHHHHHHHHhCC-----CccccceeEEEccCCCccccCCCHHHHHHHHHHHHhcCCccEEEEechhhcCCcCccCCEEE
Confidence 9999999998751 0112556666 679999999999999998 9999999999999999999999999
Q ss_pred eCCCccceeecCCCCcccceeeecCHHhHHHhhcccCCCCCcEEEEccChHHhhh---------hCCCCCCCccccccch
Q 006122 359 DSGFSKQRFYNPISDIENLVVAPISKASARQRAGRAGRVRPGKCYRLYTEEYFVK---------EIPAEGIPEMQRSNLV 429 (660)
Q Consensus 359 d~g~~k~~~~~~~~~~~~l~~~~~s~~~~~QR~GRaGR~~~G~~~~l~~~~~~~~---------~~~~~~~pei~~~~l~ 429 (660)
+++. |.|..+|.||+|| ||.++|.||.++++.+... .+.....|++.+.+..
T Consensus 485 ~~d~------------------p~s~~~~~Qr~GR-GR~~~g~~~~l~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~ 545 (696)
T 2ykg_A 485 LYEY------------------VGNVIKMIQTRGR-GRARGSKCFLLTSNAGVIEKEQINMYKEKMMNDSILRLQTWDEA 545 (696)
T ss_dssp EESC------------------C--CCCC----------CCCEEEEEESCHHHHHHHHHHHHHHHHHHHHHHHHTTSCHH
T ss_pred EeCC------------------CCCHHHHHHhhcc-CcCCCceEEEEecCCCHHHHHHHHHHHHHHHHHHHHHhhccCHH
Confidence 9655 5566677799999 9999999999999776622 0333344555555555
Q ss_pred hHHHHHH
Q 006122 430 SCVIQLK 436 (660)
Q Consensus 430 ~~~l~l~ 436 (660)
.....++
T Consensus 546 ~~~~~i~ 552 (696)
T 2ykg_A 546 VFREKIL 552 (696)
T ss_dssp HHHHHHH
T ss_pred HHHHHHH
Confidence 5544444
No 30
>3fho_A ATP-dependent RNA helicase DBP5; mRNA export, ATPase, translation termination, binding, hydrolase, membrane, mRNA transport; 2.80A {Schizosaccharomyces pombe}
Probab=100.00 E-value=1.8e-36 Score=334.73 Aligned_cols=317 Identities=17% Similarity=0.217 Sum_probs=195.6
Q ss_pred cHHHHHHHHHHHhcC--CEEEEEcCCCCcHHHHHHHHHHhcccc--CCCeEEEEeCchHHHHHHHHHHHHHHhCC-eeee
Q 006122 51 VYKYRTAILYLVETH--ATTIIVGETGSGKTTQIPQYLKEAGWA--DGGRVIACTQPRRLAVQAVASRVAEEMGV-KVGE 125 (660)
Q Consensus 51 i~~~~~~i~~~l~~~--~~vii~apTGsGKT~~ip~~l~~~~~~--~~~~~i~v~p~r~la~~~~~~~~~~~~~~-~~~~ 125 (660)
.+.+|.+++.++.++ ++++++||||||||.+....+...... .+.++++++|++.|+.| +.+++.+..+. .+..
T Consensus 142 p~~~Q~~ai~~i~~~~~~~~ll~apTGsGKT~~~~~~il~~l~~~~~~~~vLvl~P~~~L~~Q-~~~~~~~~~~~~~~~~ 220 (508)
T 3fho_A 142 XXKIQEKALPLLLSNPPRNMIGQSQSGTGKTAAFALTMLSRVDASVPKPQAICLAPSRELARQ-IMDVVTEMGKYTEVKT 220 (508)
T ss_dssp CCCTTSSSHHHHHCSSCCCEEEECCSSTTSHHHHHHHHHHHSCTTCCSCCEEEECSCHHHHHH-HHHHHHHHSTTSSCCE
T ss_pred cHHHHHHHHHHHHcCCCCCEEEECCCCccHHHHHHHHHHHHHHhCCCCceEEEEECcHHHHHH-HHHHHHHhCCccCeeE
Confidence 455677777777776 899999999999996554444433222 24468889998888765 44555554321 2222
Q ss_pred EEeeeeeccccCCCCCceEEEechHHHHHHHhcCCC-CCCCcEEEEeCCCcCCcChhHHHHHHHHHHHhcCCceEEEeec
Q 006122 126 EVGYTIRFEDFTNKDLTAIKFLTDGVLLREMMDDPL-LTKYSVIMVDEAHERSISTDILLGLLKKIQRCRSDLRLIISSA 204 (660)
Q Consensus 126 ~vg~~~~~~~~~~~~~~~I~v~T~~~ll~~l~~~~~-l~~~~~iIiDE~Her~~~~d~ll~~l~~~~~~~~~~kii~~SA 204 (660)
..++.......... ..+|+|+||+.+.+.+..... +.++++|||||+|.......+...+........++.++|+|||
T Consensus 221 ~~~~~~~~~~~~~~-~~~Ivv~T~~~l~~~l~~~~~~~~~~~lIIiDEaH~~~~~~~~~~~~~~i~~~~~~~~~~i~lSA 299 (508)
T 3fho_A 221 AFGIKDSVPKGAKI-DAQIVIGTPGTVMDLMKRRQLDARDIKVFVLDEADNMLDQQGLGDQSMRIKHLLPRNTQIVLFSA 299 (508)
T ss_dssp EC----------CC-CCSEEEECHHHHHHHHHTTCSCCTTCCEEEECCHHHHTTC--CHHHHHHHHHHSCTTCEEEEEES
T ss_pred EEEeCCcccccccC-CCCEEEECHHHHHHHHHcCCccccCCCEEEEechhhhcccCCcHHHHHHHHHhCCcCCeEEEEeC
Confidence 22222221222222 689999999999998876654 8899999999999544333333333444444566899999999
Q ss_pred ccc--hHHHHHHhhcCCCCCCCcccccCCCCCCeEEEECCccc---cceEEecCCCchhHHHHHHHHHHHHHhcCCCCcE
Q 006122 205 TIE--AKSMSAFFHARKGRRGLEGVELVPRLEPAILSVEGRGF---NVQIHYVEEPVSDYVQAAVSTVLLIHDKEPPGDI 279 (660)
Q Consensus 205 T~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i 279 (660)
|++ .+.+...+...+. .+.+..... .+...+....... .....+..+......+++
T Consensus 300 T~~~~~~~~~~~~~~~~~----------------~i~~~~~~~~~~~~~~~~~~~~~~~---~k~~~l~~ll~~~~~~~~ 360 (508)
T 3fho_A 300 TFSERVEKYAERFAPNAN----------------EIRLKTEELSVEGIKQLYMDCQSEE---HKYNVLVELYGLLTIGQS 360 (508)
T ss_dssp CCSTHHHHHHHHHSTTCE----------------EECCCCCC----CCCCEEEEC--CH---HHHHHHHHHHC---CCCE
T ss_pred CCCHHHHHHHHHhcCCCe----------------EEEeccccCCcccceEEEEECCchH---HHHHHHHHHHHhcCCCcE
Confidence 995 4555555543321 121211111 1122222221111 123334444455567899
Q ss_pred EEEcCCHHHHHHHHHHHHHHhhhccCCCCCeEEEEccCCCCHHHHhhhcCCCCCCCcEEEEeCCCcccccCCCCeEEEEe
Q 006122 280 LVFLTGQDDIDATIQLLTEEARTSKKNSSGLIILPLYSGLSRAEQEQVFSPTPRGKRKVVISTNIAETSLTLEGIVYVVD 359 (660)
Q Consensus 280 LVF~~~~~~i~~l~~~L~~~~~~~~~~~~~~~v~~lh~~l~~~~r~~v~~~f~~g~~~vlvaT~i~e~Gidip~v~~VId 359 (660)
||||+++++++.+++.|.+. +..+..+||+++.++|..+++.|++|+.+|||||+++++|+|+|++++||+
T Consensus 361 LVF~~s~~~a~~l~~~L~~~---------~~~v~~~hg~~~~~~R~~il~~f~~g~~~VLVaT~~l~~GiDip~v~~VI~ 431 (508)
T 3fho_A 361 IIFCKKKDTAEEIARRMTAD---------GHTVACLTGNLEGAQRDAIMDSFRVGTSKVLVTTNVIARGIDVSQVNLVVN 431 (508)
T ss_dssp EEBCSSTTTTTHHHHHHTTT---------TCCCCEEC-----CTTGGGTHHHHSSSCCCCEECC-----CCCTTCCEEEC
T ss_pred EEEECCHHHHHHHHHHHHhC---------CCcEEEEeCCCCHHHHHHHHHHHHCCCCeEEEeCChhhcCCCccCCCEEEE
Confidence 99999999999999998654 678999999999999999999999999999999999999999999999998
Q ss_pred CCCccceeecCCCCcccceeeecCHHhHHHhhcccCCC-CCcEEEEccChH
Q 006122 360 SGFSKQRFYNPISDIENLVVAPISKASARQRAGRAGRV-RPGKCYRLYTEE 409 (660)
Q Consensus 360 ~g~~k~~~~~~~~~~~~l~~~~~s~~~~~QR~GRaGR~-~~G~~~~l~~~~ 409 (660)
++... .. ..+.|..+|.||+|||||. ++|.|+.++++.
T Consensus 432 ~~~p~--------~~----~~~~s~~~~~Qr~GRagR~g~~g~~i~l~~~~ 470 (508)
T 3fho_A 432 YDMPL--------DQ----AGRPDPQTYLHRIGRTGRFGRVGVSINFVHDK 470 (508)
T ss_dssp ----C--------C---------CTHHHHHTTSCCC-----CEEEEEECTT
T ss_pred ECCCC--------cc----cCCCCHHHHHHHhhhcCCCCCCcEEEEEEeCh
Confidence 66511 00 0126788999999999999 789999999853
No 31
>3i5x_A ATP-dependent RNA helicase MSS116; protein-RNA complex, RNA helicase, DEAD-BOX, ATP-binding, HE hydrolase, mitochondrion; HET: ANP; 1.90A {Saccharomyces cerevisiae} PDB: 3i5y_A* 3i61_A* 3i62_A* 3sqx_A* 4db2_A 4db4_A
Probab=100.00 E-value=5e-35 Score=328.52 Aligned_cols=335 Identities=16% Similarity=0.194 Sum_probs=220.5
Q ss_pred CCccchHhHHHHhcCCCcHHHHHHHHHHHh--cCCEEEEEcCCCCcHH--HHHHHHHH--hcccc--CCCeEEEEeCchH
Q 006122 34 SIGYGYASIEKQRQRLPVYKYRTAILYLVE--THATTIIVGETGSGKT--TQIPQYLK--EAGWA--DGGRVIACTQPRR 105 (660)
Q Consensus 34 ~~~~~~~~~~~~~~~lPi~~~~~~i~~~l~--~~~~vii~apTGsGKT--~~ip~~l~--~~~~~--~~~~~i~v~p~r~ 105 (660)
++......+.+. .-....++|.+++..+. .+++++++|||||||| +++|.+.. ..... .+.++|+++|+++
T Consensus 79 l~~~l~~~l~~~-g~~~~~~~Q~~~i~~~l~~~~~~~lv~apTGsGKTl~~~lpil~~l~~~~~~~~~~~~~lil~Ptr~ 157 (563)
T 3i5x_A 79 LDKEIHKAITRM-EFPGLTPVQQKTIKPILSSEDHDVIARAKTGTGKTFAFLIPIFQHLINTKFDSQYMVKAVIVAPTRD 157 (563)
T ss_dssp SCHHHHHHHHTT-CCSSCCHHHHHHHHHHHSSSSEEEEEECCTTSCHHHHHHHHHHHHHHHTTTSSTTSCCEEEECSSHH
T ss_pred CCHHHHHHHHHC-CCCCCCHHHHHHHHHHhcCCCCeEEEECCCCCCccHHHHHHHHHHHHhccccccCCeeEEEEcCcHH
Confidence 444444444332 22336778888888777 6789999999999999 45554322 21111 1246899999999
Q ss_pred HHHHHHHHHHHHH----hC---CeeeeEEeeeee---ccccCCCCCceEEEechHHHHHHHhcC--CCCCCCcEEEEeCC
Q 006122 106 LAVQAVASRVAEE----MG---VKVGEEVGYTIR---FEDFTNKDLTAIKFLTDGVLLREMMDD--PLLTKYSVIMVDEA 173 (660)
Q Consensus 106 la~~~~~~~~~~~----~~---~~~~~~vg~~~~---~~~~~~~~~~~I~v~T~~~ll~~l~~~--~~l~~~~~iIiDE~ 173 (660)
|+.|.. +.+.+. .+ ..+....|.... ....... .++|+|+||+.|++.+... ..+.++++||||||
T Consensus 158 La~Q~~-~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~-~~~Iiv~Tp~~l~~~l~~~~~~~~~~~~~lViDEa 235 (563)
T 3i5x_A 158 LALQIE-AEVKKIHDMNYGLKKYACVSLVGGTDFRAAMNKMNKL-RPNIVIATPGRLIDVLEKYSNKFFRFVDYKVLDEA 235 (563)
T ss_dssp HHHHHH-HHHHHHHHHCGGGTTSCEEEECTTSCHHHHHHHHHHH-CCSEEEECHHHHHHHHHHHHHHHCTTCCEEEEETH
T ss_pred HHHHHH-HHHHHHHhhccccCceeEEEEECCcCHHHHHHHHhcC-CCCEEEECcHHHHHHHHhccccccccceEEEEeCH
Confidence 988733 222221 11 223333332111 0011122 5799999999999887653 24788999999999
Q ss_pred CcCCcCh---hHHHHHHHHHHHh----cCCceEEEeecccch--HHHHHHhhcCCCCCCCcccccCCCCCCeEEEECC--
Q 006122 174 HERSIST---DILLGLLKKIQRC----RSDLRLIISSATIEA--KSMSAFFHARKGRRGLEGVELVPRLEPAILSVEG-- 242 (660)
Q Consensus 174 Her~~~~---d~ll~~l~~~~~~----~~~~kii~~SAT~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-- 242 (660)
|+ ..+. ..+..++..+... .++.+++++|||++. ..+..++...+. .+.+..
T Consensus 236 h~-l~~~~f~~~~~~i~~~l~~~~~~~~~~~~~l~~SAT~~~~v~~~~~~~~~~~~----------------~~~~~~~~ 298 (563)
T 3i5x_A 236 DR-LLEIGFRDDLETISGILNEKNSKSADNIKTLLFSATLDDKVQKLANNIMNKKE----------------CLFLDTVD 298 (563)
T ss_dssp HH-HTSTTTHHHHHHHHHHHHHHCSSCTTCCEEEEEESSCCTHHHHHTTTTCCSSE----------------EEEEESSC
T ss_pred HH-HhccchHHHHHHHHHhhhhccccCccCceEEEEEccCCHHHHHHHHHhcCCCc----------------eEEEeccC
Confidence 94 3332 2233333333332 247899999999954 333333322210 111110
Q ss_pred -----ccccceEEec-CCCchhHHHHHHHHHHHH-HhcCCCCcEEEEcCCHHHHHHHHHHHHHHhhhccCCCCCeEEEEc
Q 006122 243 -----RGFNVQIHYV-EEPVSDYVQAAVSTVLLI-HDKEPPGDILVFLTGQDDIDATIQLLTEEARTSKKNSSGLIILPL 315 (660)
Q Consensus 243 -----~~~~v~~~~~-~~~~~~~~~~~~~~~~~~-~~~~~~~~iLVF~~~~~~i~~l~~~L~~~~~~~~~~~~~~~v~~l 315 (660)
....+...+. ...........+..+... .....++++||||++++.++.+++.|.+... .++.+..+
T Consensus 299 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~iVF~~s~~~~~~l~~~L~~~~~------~~~~v~~~ 372 (563)
T 3i5x_A 299 KNEPEAHERIDQSVVISEKFANSIFAAVEHIKKQIKERDSNYKAIIFAPTVKFTSFLCSILKNEFK------KDLPILEF 372 (563)
T ss_dssp SSSCSSCTTEEEEEEEESSTTHHHHHHHHHHHHHHHHTTTCCEEEEECSCHHHHHHHHHHHHHHHT------TTSCEEEE
T ss_pred CCCccccccCceEEEECchhHhhHHHHHHHHHHHHhhcCCCCcEEEEcCcHHHHHHHHHHHHHhcc------CCceEEEe
Confidence 0011111111 111222223333333333 3335678899999999999999999988742 26789999
Q ss_pred cCCCCHHHHhhhcCCCCCCCcEEEEeCCCcccccCCCCeEEEEeCCCccceeecCCCCcccceeeecCHHhHHHhhcccC
Q 006122 316 YSGLSRAEQEQVFSPTPRGKRKVVISTNIAETSLTLEGIVYVVDSGFSKQRFYNPISDIENLVVAPISKASARQRAGRAG 395 (660)
Q Consensus 316 h~~l~~~~r~~v~~~f~~g~~~vlvaT~i~e~Gidip~v~~VId~g~~k~~~~~~~~~~~~l~~~~~s~~~~~QR~GRaG 395 (660)
||+|++++|..+++.|++|+.+|||||+++++|||+|++++||+++. |.|..+|.||+||||
T Consensus 373 h~~~~~~~R~~~~~~f~~g~~~vLvaT~~~~~GiDip~v~~VI~~~~------------------p~s~~~y~Qr~GRag 434 (563)
T 3i5x_A 373 HGKITQNKRTSLVKRFKKDESGILVCTDVGARGMDFPNVHEVLQIGV------------------PSELANYIHRIGRTA 434 (563)
T ss_dssp STTSCHHHHHHHHHHHHHCSSEEEEECGGGTSSCCCTTCCEEEEESC------------------CSSTTHHHHHHTTSS
T ss_pred cCCCCHHHHHHHHHHHhcCCCCEEEEcchhhcCCCcccCCEEEEECC------------------CCchhhhhhhcCccc
Confidence 99999999999999999999999999999999999999999999776 778899999999999
Q ss_pred CC-CCcEEEEccChHHhh
Q 006122 396 RV-RPGKCYRLYTEEYFV 412 (660)
Q Consensus 396 R~-~~G~~~~l~~~~~~~ 412 (660)
|. ++|.|+.++++.+..
T Consensus 435 R~g~~g~~i~~~~~~e~~ 452 (563)
T 3i5x_A 435 RSGKEGSSVLFICKDELP 452 (563)
T ss_dssp CTTCCEEEEEEEEGGGHH
T ss_pred cCCCCceEEEEEchhHHH
Confidence 99 799999999876543
No 32
>3rc3_A ATP-dependent RNA helicase SUPV3L1, mitochondrial; SUV3, nucleus, hydrolase; HET: ANP; 2.08A {Homo sapiens} PDB: 3rc8_A
Probab=100.00 E-value=1e-34 Score=325.81 Aligned_cols=363 Identities=17% Similarity=0.169 Sum_probs=245.9
Q ss_pred cCCEEEEEcCCCCcHHHHHHHHHHhccccCCCeEEEEeCchHHHHHHHHHHHHHHhCCeeeeEEeeeeeccccCCCCCce
Q 006122 64 THATTIIVGETGSGKTTQIPQYLKEAGWADGGRVIACTQPRRLAVQAVASRVAEEMGVKVGEEVGYTIRFEDFTNKDLTA 143 (660)
Q Consensus 64 ~~~~vii~apTGsGKT~~ip~~l~~~~~~~~~~~i~v~p~r~la~~~~~~~~~~~~~~~~~~~vg~~~~~~~~~~~~~~~ 143 (660)
++++++++||||||||+.+.+.+... +..++++|+|.|+.|. ++++. ..|..++..+|........... ..+
T Consensus 154 ~rk~vlv~apTGSGKT~~al~~l~~~-----~~gl~l~PtR~LA~Qi-~~~l~-~~g~~v~lltG~~~~iv~TpGr-~~~ 225 (677)
T 3rc3_A 154 QRKIIFHSGPTNSGKTYHAIQKYFSA-----KSGVYCGPLKLLAHEI-FEKSN-AAGVPCDLVTGEERVTVQPNGK-QAS 225 (677)
T ss_dssp CCEEEEEECCTTSSHHHHHHHHHHHS-----SSEEEEESSHHHHHHH-HHHHH-HTTCCEEEECSSCEECCSTTCC-CCS
T ss_pred CCCEEEEEcCCCCCHHHHHHHHHHhc-----CCeEEEeCHHHHHHHH-HHHHH-hcCCcEEEEECCeeEEecCCCc-ccc
Confidence 67899999999999998666665544 2348888888877664 44443 4588888888855442221112 478
Q ss_pred EEEechHHHHHHHhcCCCCCCCcEEEEeCCCcCCcChhHHHHHHHHHHHhc-CCceEEEeeccc-chHHHHHHhhcCCCC
Q 006122 144 IKFLTDGVLLREMMDDPLLTKYSVIMVDEAHERSISTDILLGLLKKIQRCR-SDLRLIISSATI-EAKSMSAFFHARKGR 221 (660)
Q Consensus 144 I~v~T~~~ll~~l~~~~~l~~~~~iIiDE~Her~~~~d~ll~~l~~~~~~~-~~~kii~~SAT~-~~~~~~~~~~~~~~~ 221 (660)
++++|++.+. ....+++|||||+|++ .+.++...+...+.... ++.+++++|||. ....+....+...
T Consensus 226 il~~T~e~~~-------l~~~v~lvVIDEaH~l-~d~~~g~~~~~~l~~l~~~~i~il~~SAT~~~i~~l~~~~~~~~-- 295 (677)
T 3rc3_A 226 HVSCTVEMCS-------VTTPYEVAVIDEIQMI-RDPARGWAWTRALLGLCAEEVHLCGEPAAIDLVMELMYTTGEEV-- 295 (677)
T ss_dssp EEEEEGGGCC-------SSSCEEEEEECSGGGG-GCTTTHHHHHHHHHHCCEEEEEEEECGGGHHHHHHHHHHHTCCE--
T ss_pred eeEecHhHhh-------hcccCCEEEEecceec-CCccchHHHHHHHHccCccceEEEeccchHHHHHHHHHhcCCce--
Confidence 8899886532 4577899999999954 55566666666666655 678999999996 2333333332211
Q ss_pred CCCcccccCCCCCCeEEEECCccccceEEecCCCchhHHHHHHHHHHHHHhcCCCCcEEEEcCCHHHHHHHHHHHHHHhh
Q 006122 222 RGLEGVELVPRLEPAILSVEGRGFNVQIHYVEEPVSDYVQAAVSTVLLIHDKEPPGDILVFLTGQDDIDATIQLLTEEAR 301 (660)
Q Consensus 222 ~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iLVF~~~~~~i~~l~~~L~~~~~ 301 (660)
.+....+..+ ..+........ .....| .+|||+++++++.+++.|.+.
T Consensus 296 ---------------~v~~~~r~~~--l~~~~~~l~~l------------~~~~~g-~iIf~~s~~~ie~la~~L~~~-- 343 (677)
T 3rc3_A 296 ---------------EVRDYKRLTP--ISVLDHALESL------------DNLRPG-DCIVCFSKNDIYSVSRQIEIR-- 343 (677)
T ss_dssp ---------------EEEECCCSSC--EEECSSCCCSG------------GGCCTT-EEEECSSHHHHHHHHHHHHHT--
T ss_pred ---------------EEEEeeecch--HHHHHHHHHHH------------HhcCCC-CEEEEcCHHHHHHHHHHHHhc--
Confidence 1111112222 22222111110 111333 578899999999999999875
Q ss_pred hccCCCCCeEEEEccCCCCHHHHhhhcCCCCC--CCcEEEEeCCCcccccCCCCeEEEEeCCCccceeecCCCCccccee
Q 006122 302 TSKKNSSGLIILPLYSGLSRAEQEQVFSPTPR--GKRKVVISTNIAETSLTLEGIVYVVDSGFSKQRFYNPISDIENLVV 379 (660)
Q Consensus 302 ~~~~~~~~~~v~~lh~~l~~~~r~~v~~~f~~--g~~~vlvaT~i~e~Gidip~v~~VId~g~~k~~~~~~~~~~~~l~~ 379 (660)
++.+.++||+|++++|.++++.|++ |.++|||||+++++|||+ ++++||++|+.|. .||+..+. . .
T Consensus 344 -------g~~v~~lHG~L~~~~R~~~~~~F~~~~g~~~VLVATdi~e~GlDi-~v~~VI~~~~~k~-~~~~~G~~-~--~ 411 (677)
T 3rc3_A 344 -------GLESAVIYGSLPPGTKLAQAKKFNDPNDPCKILVATDAIGMGLNL-SIRRIIFYSLIKP-SINEKGER-E--L 411 (677)
T ss_dssp -------TCCCEEECTTSCHHHHHHHHHHHHCTTSSCCEEEECGGGGSSCCC-CBSEEEESCSBC---------------
T ss_pred -------CCCeeeeeccCCHHHHHHHHHHHHccCCCeEEEEeCcHHHCCcCc-CccEEEECCcccc-ccccCCcc-c--c
Confidence 6789999999999999999999998 899999999999999999 8999999999887 77776443 2 4
Q ss_pred eecCHHhHHHhhcccCCCC----CcEEEEccChH--HhhhhCCCCCCCccccccchhHHHHHHHcCCCCccCCCCCCCCC
Q 006122 380 APISKASARQRAGRAGRVR----PGKCYRLYTEE--YFVKEIPAEGIPEMQRSNLVSCVIQLKALGIDNILGFDWPASPP 453 (660)
Q Consensus 380 ~~~s~~~~~QR~GRaGR~~----~G~~~~l~~~~--~~~~~~~~~~~pei~~~~l~~~~l~l~~~~~~~~~~~~~~~~p~ 453 (660)
.|+|.++|.||+|||||.+ +|.||.+++++ .+.. +.....|+|.+..+....++++.++.. ++
T Consensus 412 ~p~s~~~~~QR~GRAGR~g~~g~~G~v~~l~~~d~~~~~~-~~~~~~~~i~~~~l~p~~~~l~~~~~~----------l~ 480 (677)
T 3rc3_A 412 EPITTSQALQIAGRAGRFSSRFKEGEVTTMNHEDLSLLKE-ILKRPVDPIRAAGLHPTAEQIEMFAYH----------LP 480 (677)
T ss_dssp CBCCHHHHHHHHTTBTCTTSSCSSEEEEESSTTHHHHHHH-HHHSCCCCCCCEEECCCHHHHHHHHHH----------ST
T ss_pred ccCCHHHHHHHhcCCCCCCCCCCCEEEEEEecchHHHHHH-HHhcCcchhhhccCCChHHHHHHHhcc----------CC
Confidence 4999999999999999994 58999999877 5555 777888999999998888888887621 11
Q ss_pred HHHHHHHHHHHHHCCCCCCCCC------cchHHHHHhccCCCChhhhHHHHhh
Q 006122 454 PEAMIRALEVLYSLGVLDDDAK------LTSPTGFQVAEIPLEPMISKMILSS 500 (660)
Q Consensus 454 ~~~~~~al~~L~~lgald~~~~------lT~~lG~~~~~lpl~p~~~~~l~~~ 500 (660)
...+...++.+..++.+|.... .. .+...+.++|++..---.+..+
T Consensus 481 ~~~l~ell~~l~~~~~vd~~f~~~~l~~~~-~la~~l~~~~L~~~~~~~f~~a 532 (677)
T 3rc3_A 481 DATLSNLIDIFVDFSQVDGQYFVCNMDDFK-FSAELIQHIPLSLRVRYVFCTA 532 (677)
T ss_dssp TSCHHHHHHHHHHHCBCCTTEEECCCHHHH-HHHHHTTTSCCCHHHHHHHHHS
T ss_pred cchHHHHHHHHHHhhcccchhhccchHHHH-HHHHHHhhCCCCHHHHhheEeC
Confidence 1234566666667776664321 22 2455666666655554444333
No 33
>3sqw_A ATP-dependent RNA helicase MSS116, mitochondrial; RECA fold, RNA dependent ATPase, RNA helicase; HET: ANP; 1.91A {Saccharomyces cerevisiae S288C}
Probab=100.00 E-value=5.5e-35 Score=328.63 Aligned_cols=334 Identities=16% Similarity=0.177 Sum_probs=220.0
Q ss_pred CCccchHhHHHHhcCCCcHHHHHHHHHHHh--cCCEEEEEcCCCCcHH--HHHHHHHHh--ccc--cCCCeEEEEeCchH
Q 006122 34 SIGYGYASIEKQRQRLPVYKYRTAILYLVE--THATTIIVGETGSGKT--TQIPQYLKE--AGW--ADGGRVIACTQPRR 105 (660)
Q Consensus 34 ~~~~~~~~~~~~~~~lPi~~~~~~i~~~l~--~~~~vii~apTGsGKT--~~ip~~l~~--~~~--~~~~~~i~v~p~r~ 105 (660)
++......+.+... -...++|.+++..+. .+++++++|||||||| +++|.+... ... ..+.++|+++|+++
T Consensus 28 l~~~l~~~l~~~g~-~~~~~~Q~~~i~~il~~~~~dvlv~apTGsGKTl~~~lpil~~l~~~~~~~~~~~~~lvl~Ptr~ 106 (579)
T 3sqw_A 28 LDKEIHKAITRMEF-PGLTPVQQKTIKPILSSEDHDVIARAKTGTGKTFAFLIPIFQHLINTKFDSQYMVKAVIVAPTRD 106 (579)
T ss_dssp SCHHHHHHHHTTTC-SSCCHHHHHHHHHHHCSSSEEEEEECCTTSCHHHHHHHHHHHHHHHTTTSSTTSCCEEEECSSHH
T ss_pred CCHHHHHHHHHCCC-CCCCHHHHHHHHHHHccCCCeEEEEcCCCcHHHHHHHHHHHHHHHhccccccCCCeEEEEcchHH
Confidence 55555544433322 236677888887777 6789999999999999 455544222 111 12346899999999
Q ss_pred HHHHHHHHHHHHHh-------CCeeeeEEeeeeec---cccCCCCCceEEEechHHHHHHHhcC--CCCCCCcEEEEeCC
Q 006122 106 LAVQAVASRVAEEM-------GVKVGEEVGYTIRF---EDFTNKDLTAIKFLTDGVLLREMMDD--PLLTKYSVIMVDEA 173 (660)
Q Consensus 106 la~~~~~~~~~~~~-------~~~~~~~vg~~~~~---~~~~~~~~~~I~v~T~~~ll~~l~~~--~~l~~~~~iIiDE~ 173 (660)
|+.|.. +.+.+.. ...+....|..... ...... .++|+|+||++|++.+... ..+.++++||||||
T Consensus 107 La~Q~~-~~~~~~~~~~~~~~~~~~~~~~gg~~~~~~~~~l~~~-~~~IlV~Tp~~l~~~l~~~~~~~~~~~~~lViDEa 184 (579)
T 3sqw_A 107 LALQIE-AEVKKIHDMNYGLKKYACVSLVGGTDFRAAMNKMNKL-RPNIVIATPGRLIDVLEKYSNKFFRFVDYKVLDEA 184 (579)
T ss_dssp HHHHHH-HHHHHHHHHCGGGTTSCEEEECTTSCHHHHHHHHHHH-CCSEEEECHHHHHHHHHHHHHHHCTTCCEEEEETH
T ss_pred HHHHHH-HHHHHHHhhcccccceEEEEEECCccHHHHHHHHhcC-CCCEEEECHHHHHHHHHhccccccccCCEEEEECh
Confidence 987633 3333221 12233333321110 011112 5799999999999887653 24888999999999
Q ss_pred CcCCcCh---hHHHHHHHHHHHhc----CCceEEEeecccchH--HHHHHhhcCCCCCCCcccccCCCCCCeEEEECC--
Q 006122 174 HERSIST---DILLGLLKKIQRCR----SDLRLIISSATIEAK--SMSAFFHARKGRRGLEGVELVPRLEPAILSVEG-- 242 (660)
Q Consensus 174 Her~~~~---d~ll~~l~~~~~~~----~~~kii~~SAT~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-- 242 (660)
|+ ..+. +.+..++..+.... ++.+++++|||++.. .+...+...+ ..+.+..
T Consensus 185 h~-l~~~gf~~~~~~i~~~l~~~~~~~~~~~~~l~~SAT~~~~v~~~~~~~l~~~----------------~~~~~~~~~ 247 (579)
T 3sqw_A 185 DR-LLEIGFRDDLETISGILNEKNSKSADNIKTLLFSATLDDKVQKLANNIMNKK----------------ECLFLDTVD 247 (579)
T ss_dssp HH-HTSTTTHHHHHHHHHHHHHHCSSCTTCCEEEEEESSCCTHHHHHTTTTCCSS----------------EEEEEESSC
T ss_pred HH-hhcCCCHHHHHHHHHHhhhhhcccccCceEEEEeccCChHHHHHHHHHcCCC----------------ceEEEeecC
Confidence 94 3332 22333333333322 378999999999543 3332222211 0111111
Q ss_pred -----ccccceEEecC-CCchhHHHHHHHHHHHHH-hcCCCCcEEEEcCCHHHHHHHHHHHHHHhhhccCCCCCeEEEEc
Q 006122 243 -----RGFNVQIHYVE-EPVSDYVQAAVSTVLLIH-DKEPPGDILVFLTGQDDIDATIQLLTEEARTSKKNSSGLIILPL 315 (660)
Q Consensus 243 -----~~~~v~~~~~~-~~~~~~~~~~~~~~~~~~-~~~~~~~iLVF~~~~~~i~~l~~~L~~~~~~~~~~~~~~~v~~l 315 (660)
....+...+.. ..........+..+.... ....++++||||+++++++.+++.|.+... .++.+..+
T Consensus 248 ~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~iVF~~t~~~~~~l~~~L~~~~~------~~~~v~~~ 321 (579)
T 3sqw_A 248 KNEPEAHERIDQSVVISEKFANSIFAAVEHIKKQIKERDSNYKAIIFAPTVKFTSFLCSILKNEFK------KDLPILEF 321 (579)
T ss_dssp SSSCSSCTTEEEEEEEESSTTHHHHHHHHHHHHHHHHTTTCCEEEEECSSHHHHHHHHHHHHHHHT------TTSCEEEE
T ss_pred ccccccccccceEEEEecchhhhHHHHHHHHHHHHhhcCCCCcEEEECCcHHHHHHHHHHHHHhhc------CCCcEEEe
Confidence 00111111111 111222223333333333 335678899999999999999999988742 26779999
Q ss_pred cCCCCHHHHhhhcCCCCCCCcEEEEeCCCcccccCCCCeEEEEeCCCccceeecCCCCcccceeeecCHHhHHHhhcccC
Q 006122 316 YSGLSRAEQEQVFSPTPRGKRKVVISTNIAETSLTLEGIVYVVDSGFSKQRFYNPISDIENLVVAPISKASARQRAGRAG 395 (660)
Q Consensus 316 h~~l~~~~r~~v~~~f~~g~~~vlvaT~i~e~Gidip~v~~VId~g~~k~~~~~~~~~~~~l~~~~~s~~~~~QR~GRaG 395 (660)
||+|++++|.++++.|++|+.+|||||+++++|||+|++++||+++. |.|..+|.||+||||
T Consensus 322 hg~~~~~~R~~~~~~F~~g~~~vLVaT~~~~~GiDip~v~~VI~~~~------------------p~s~~~y~Qr~GRag 383 (579)
T 3sqw_A 322 HGKITQNKRTSLVKRFKKDESGILVCTDVGARGMDFPNVHEVLQIGV------------------PSELANYIHRIGRTA 383 (579)
T ss_dssp STTSCHHHHHHHHHHHHHCSSEEEEECGGGTSSCCCTTCCEEEEESC------------------CSSTTHHHHHHTTSS
T ss_pred cCCCCHHHHHHHHHHhhcCCCeEEEEcchhhcCCCcccCCEEEEcCC------------------CCCHHHhhhhccccc
Confidence 99999999999999999999999999999999999999999999777 778899999999999
Q ss_pred CC-CCcEEEEccChHHh
Q 006122 396 RV-RPGKCYRLYTEEYF 411 (660)
Q Consensus 396 R~-~~G~~~~l~~~~~~ 411 (660)
|. ++|.|+.++++.+.
T Consensus 384 R~g~~g~~i~~~~~~e~ 400 (579)
T 3sqw_A 384 RSGKEGSSVLFICKDEL 400 (579)
T ss_dssp CTTCCEEEEEEEEGGGH
T ss_pred cCCCCceEEEEEcccHH
Confidence 99 79999999987653
No 34
>1wp9_A ATP-dependent RNA helicase, putative; ATPase, DNA replication, DNA repair, DNA recombina hydrolase; 2.90A {Pyrococcus furiosus} SCOP: c.37.1.19 c.37.1.19
Probab=100.00 E-value=3.1e-34 Score=315.37 Aligned_cols=336 Identities=18% Similarity=0.172 Sum_probs=224.3
Q ss_pred CCCcHHHHHHHHHHHhcCCEEEEEcCCCCcHHHHHHHHHHhccccCCCeEEEEeCchHHHHHHHHHHHHHHhCC---eee
Q 006122 48 RLPVYKYRTAILYLVETHATTIIVGETGSGKTTQIPQYLKEAGWADGGRVIACTQPRRLAVQAVASRVAEEMGV---KVG 124 (660)
Q Consensus 48 ~lPi~~~~~~i~~~l~~~~~vii~apTGsGKT~~ip~~l~~~~~~~~~~~i~v~p~r~la~~~~~~~~~~~~~~---~~~ 124 (660)
.++++++|.+++..+..+ ++++.+|||+|||.++..++.......+.++++++|++.|+.| +.+.+.+..+. .++
T Consensus 7 ~~~l~~~Q~~~i~~~~~~-~~ll~~~tG~GKT~~~~~~~~~~~~~~~~~~liv~P~~~L~~q-~~~~~~~~~~~~~~~v~ 84 (494)
T 1wp9_A 7 LIQPRIYQEVIYAKCKET-NCLIVLPTGLGKTLIAMMIAEYRLTKYGGKVLMLAPTKPLVLQ-HAESFRRLFNLPPEKIV 84 (494)
T ss_dssp HHCCCHHHHHHHHHGGGS-CEEEECCTTSCHHHHHHHHHHHHHHHSCSCEEEECSSHHHHHH-HHHHHHHHBCSCGGGEE
T ss_pred CCCccHHHHHHHHHHhhC-CEEEEcCCCCCHHHHHHHHHHHHHhcCCCeEEEEECCHHHHHH-HHHHHHHHhCcchhheE
Confidence 357889999999999888 8999999999999776665554432345678888888877664 56666677665 566
Q ss_pred eEEeeeeeccccCCCCCceEEEechHHHHHHHhcCCC-CCCCcEEEEeCCCcCCcChhHHHHHHHHHHHhcCCceEEEee
Q 006122 125 EEVGYTIRFEDFTNKDLTAIKFLTDGVLLREMMDDPL-LTKYSVIMVDEAHERSISTDILLGLLKKIQRCRSDLRLIISS 203 (660)
Q Consensus 125 ~~vg~~~~~~~~~~~~~~~I~v~T~~~ll~~l~~~~~-l~~~~~iIiDE~Her~~~~d~ll~~l~~~~~~~~~~kii~~S 203 (660)
...|.....+........+|+|+|++.+.+.+..... +.++++||+||||. ..+......+.+.+....+..++++||
T Consensus 85 ~~~g~~~~~~~~~~~~~~~ivv~T~~~l~~~~~~~~~~~~~~~~vIiDEaH~-~~~~~~~~~~~~~~~~~~~~~~~l~lT 163 (494)
T 1wp9_A 85 ALTGEKSPEERSKAWARAKVIVATPQTIENDLLAGRISLEDVSLIVFDEAHR-AVGNYAYVFIAREYKRQAKNPLVIGLT 163 (494)
T ss_dssp EECSCSCHHHHHHHHHHCSEEEECHHHHHHHHHTTSCCTTSCSEEEEETGGG-CSTTCHHHHHHHHHHHHCSSCCEEEEE
T ss_pred EeeCCcchhhhhhhccCCCEEEecHHHHHHHHhcCCcchhhceEEEEECCcc-cCCCCcHHHHHHHHHhcCCCCeEEEEe
Confidence 6655332211111111578999999999998876554 88999999999994 333334444555565667789999999
Q ss_pred cccc--hHHHHHHhhcCCCCCCCcc-------cccCCCCCCeEEEECCcc--ccce----------------EEec----
Q 006122 204 ATIE--AKSMSAFFHARKGRRGLEG-------VELVPRLEPAILSVEGRG--FNVQ----------------IHYV---- 252 (660)
Q Consensus 204 AT~~--~~~~~~~~~~~~~~~~~~~-------~~~~~~~~~~~~~~~~~~--~~v~----------------~~~~---- 252 (660)
||+. .+.+.+++........... .................. ..+. ..+.
T Consensus 164 aTp~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 243 (494)
T 1wp9_A 164 ASPGSTPEKIMEVINNLGIEHIEYRSENSPDVRPYVKGIRFEWVRVDLPEIYKEVRKLLREMLRDALKPLAETGLLESSS 243 (494)
T ss_dssp SCSCSSHHHHHHHHHHTTCCEEEECCTTSTTTGGGCCCCCEEEEEECCCHHHHHHHHHHHHHHHHHHHHHHHHTSSSCCC
T ss_pred cCCCCCcHHHHHHHHhcChheeeccCCCcHHHHHhcCCCceeEEecCCcHHHHHHHHHHHHHHHHHHHHHHHhccccccC
Confidence 9993 5555555543221000000 000000000000000000 0000 0000
Q ss_pred -------------------CC-----------------------------------------------------------
Q 006122 253 -------------------EE----------------------------------------------------------- 254 (660)
Q Consensus 253 -------------------~~----------------------------------------------------------- 254 (660)
..
T Consensus 244 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~ 323 (494)
T 1wp9_A 244 PDIPKKEVLRAGQIINEEMAKGNHDLRGLLLYHAMALKLHHAIELLETQGLSALRAYIKKLYEEAKAGSTKASKEIFSDK 323 (494)
T ss_dssp TTSCHHHHHHHHHHHHHHHTTTCCSTTTHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHTTCCHHHHHHHTSH
T ss_pred CCcchhHHHHHHHHHHHHhhccccchhhHHHHHHHHHHHHHHHHHHHhhcHHHHHHHHHHHHHhhccccchhhhhhhhhH
Confidence 00
Q ss_pred ----------------CchhHHHHHHHHHHHHHhcCCCCcEEEEcCCHHHHHHHHHHHHHHhhhccCCCCCeEEEEccC-
Q 006122 255 ----------------PVSDYVQAAVSTVLLIHDKEPPGDILVFLTGQDDIDATIQLLTEEARTSKKNSSGLIILPLYS- 317 (660)
Q Consensus 255 ----------------~~~~~~~~~~~~~~~~~~~~~~~~iLVF~~~~~~i~~l~~~L~~~~~~~~~~~~~~~v~~lh~- 317 (660)
.....+......+........++++|||+++++.++.+++.|.+. ++.+..+||
T Consensus 324 ~~~~~~~~~~~~~~~~~~~~k~~~l~~~l~~~~~~~~~~k~lVF~~~~~~~~~l~~~L~~~---------~~~~~~~~g~ 394 (494)
T 1wp9_A 324 RMKKAISLLVQAKEIGLDHPKMDKLKEIIREQLQRKQNSKIIVFTNYRETAKKIVNELVKD---------GIKAKRFVGQ 394 (494)
T ss_dssp HHHHHHHHHHHHHHHTCSCHHHHHHHHHHHHHHHHCTTCCEEEECSCHHHHHHHHHHHHHT---------TCCEEEECCS
T ss_pred HHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHhccCCCCeEEEEEccHHHHHHHHHHHHHc---------CCCcEEEecc
Confidence 000001111111222222256789999999999999999999875 678999999
Q ss_pred -------CCCHHHHhhhcCCCCCCCcEEEEeCCCcccccCCCCeEEEEeCCCccceeecCCCCcccceeeecCHHhHHHh
Q 006122 318 -------GLSRAEQEQVFSPTPRGKRKVVISTNIAETSLTLEGIVYVVDSGFSKQRFYNPISDIENLVVAPISKASARQR 390 (660)
Q Consensus 318 -------~l~~~~r~~v~~~f~~g~~~vlvaT~i~e~Gidip~v~~VId~g~~k~~~~~~~~~~~~l~~~~~s~~~~~QR 390 (660)
+++.++|.++++.|++|..+|||||+++++|+|+|++++||.++. |.+...+.||
T Consensus 395 ~~~~~~~~~~~~~r~~~~~~F~~~~~~vLv~T~~~~~Gldl~~~~~Vi~~d~------------------~~~~~~~~Qr 456 (494)
T 1wp9_A 395 ASKENDRGLSQREQKLILDEFARGEFNVLVATSVGEEGLDVPEVDLVVFYEP------------------VPSAIRSIQR 456 (494)
T ss_dssp SCC-------CCHHHHHHHHHHHTSCSEEEECGGGGGGGGSTTCCEEEESSC------------------CHHHHHHHHH
T ss_pred ccccccccCCHHHHHHHHHHHhcCCceEEEECCccccCCCchhCCEEEEeCC------------------CCCHHHHHHH
Confidence 999999999999999999999999999999999999999999776 7789999999
Q ss_pred hcccCCCCCcEEEEccChHHhhh
Q 006122 391 AGRAGRVRPGKCYRLYTEEYFVK 413 (660)
Q Consensus 391 ~GRaGR~~~G~~~~l~~~~~~~~ 413 (660)
+|||||.++|.+|.++++...+.
T Consensus 457 ~GR~~R~g~g~~~~l~~~~t~ee 479 (494)
T 1wp9_A 457 RGRTGRHMPGRVIILMAKGTRDE 479 (494)
T ss_dssp HTTSCSCCCSEEEEEEETTSHHH
T ss_pred HhhccCCCCceEEEEEecCCHHH
Confidence 99999998899999999765544
No 35
>4a2p_A RIG-I, retinoic acid inducible protein I; hydrolase, superfamily 2 RNA helicase, ATP and dsRNA binding antiviral signalling pathway; 3.00A {Anas platyrhynchos} PDB: 4a36_A*
Probab=100.00 E-value=4.7e-34 Score=320.13 Aligned_cols=345 Identities=16% Similarity=0.138 Sum_probs=171.0
Q ss_pred CCCcHHHHHHHHHHHhcCCEEEEEcCCCCcHHHHHHHHHHhccc----cCCCeEEEEeCchHHHHHHH--HHHHHHHhCC
Q 006122 48 RLPVYKYRTAILYLVETHATTIIVGETGSGKTTQIPQYLKEAGW----ADGGRVIACTQPRRLAVQAV--ASRVAEEMGV 121 (660)
Q Consensus 48 ~lPi~~~~~~i~~~l~~~~~vii~apTGsGKT~~ip~~l~~~~~----~~~~~~i~v~p~r~la~~~~--~~~~~~~~~~ 121 (660)
.+...++|.+++..+..++++++.+|||||||.+....+..... ..+.++++++|++.|+.|.. .+.+....+.
T Consensus 5 ~~~~~~~Q~~~i~~~~~~~~~l~~~~tGsGKT~~~~~~~~~~~~~~~~~~~~~~lil~P~~~L~~q~~~~~~~~~~~~~~ 84 (556)
T 4a2p_A 5 TKKARSYQIELAQPAINGKNALICAPTGSGKTFVSILICEHHFQNMPAGRKAKVVFLATKVPVYEQQKNVFKHHFERQGY 84 (556)
T ss_dssp ---CCHHHHHHHHHHHTTCCEEEECCTTSCHHHHHHHHHHHHHHTCCSSCCCCEEEECSSHHHHHHHHHHHHHHHGGGTC
T ss_pred CCCCCHHHHHHHHHHHcCCCEEEEcCCCChHHHHHHHHHHHHHHhCcccCCCeEEEEeCCHHHHHHHHHHHHHHhcccCc
Confidence 35677889999999988999999999999999443322222211 11567899999999988743 3333444477
Q ss_pred eeeeEEeeeeecccc--CCCCCceEEEechHHHHHHHhcCC--CCCCCcEEEEeCCCcCCcChhHHHHHHHHHHHh----
Q 006122 122 KVGEEVGYTIRFEDF--TNKDLTAIKFLTDGVLLREMMDDP--LLTKYSVIMVDEAHERSISTDILLGLLKKIQRC---- 193 (660)
Q Consensus 122 ~~~~~vg~~~~~~~~--~~~~~~~I~v~T~~~ll~~l~~~~--~l~~~~~iIiDE~Her~~~~d~ll~~l~~~~~~---- 193 (660)
.++...|........ ... ..+|+|+||+.|.+.+.... .+.++++|||||||...-. .....++......
T Consensus 85 ~~~~~~g~~~~~~~~~~~~~-~~~i~v~T~~~l~~~~~~~~~~~~~~~~~vViDEah~~~~~-~~~~~~~~~~~~~~~~~ 162 (556)
T 4a2p_A 85 SVQGISGENFSNVSVEKVIE-DSDIIVVTPQILVNSFEDGTLTSLSIFTLMIFDECHNTTGN-HPYNVLMTRYLEQKFNS 162 (556)
T ss_dssp CEEECCCC-----CHHHHHH-HCSEEEECHHHHHHHHHSSSCCCSTTCSEEEEETGGGCSTT-SHHHHHHHHHHHHHHCC
T ss_pred eEEEEeCCCCcchhHHHhhC-CCCEEEECHHHHHHHHHhCcccccccCCEEEEECCcccCCc-chHHHHHHHHHHhhhcc
Confidence 777777744222111 112 57899999999999987754 4889999999999954433 3344444343332
Q ss_pred -cCCceEEEeecccc---hHHHHHH----------hhcCCCCCCCcc---c-ccCCCCCCeEEEECCcc-----------
Q 006122 194 -RSDLRLIISSATIE---AKSMSAF----------FHARKGRRGLEG---V-ELVPRLEPAILSVEGRG----------- 244 (660)
Q Consensus 194 -~~~~kii~~SAT~~---~~~~~~~----------~~~~~~~~~~~~---~-~~~~~~~~~~~~~~~~~----------- 244 (660)
.+..++++||||+. ...+.+| ++.......... . .................
T Consensus 163 ~~~~~~~l~lSAT~~~~~~~~~~~~~~~i~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 242 (556)
T 4a2p_A 163 ASQLPQILGLTASVGVGNAKNIEETIEHICSLCSYLDIQAISTVRENIQELQRFMNKPEIDVRLVKRRIHNPFAAIISNL 242 (556)
T ss_dssp ---CCEEEEEESCCCCTTCSSHHHHHHHHHHHHHHHTCSEEECCCTTHHHHHHHTCCCCEEEEECCCCSCCHHHHHHHHH
T ss_pred cCCCCeEEEEeCCcccCchhhHHHHHHHHHHHHHhcCCeEecchhcchHHHHhcCCCCceEEEEcCCCcCChHHHHHHHH
Confidence 46689999999992 2222222 221100000000 0 00000000001111000
Q ss_pred ------------------------ccceEE--ecCC--------------------------------------------
Q 006122 245 ------------------------FNVQIH--YVEE-------------------------------------------- 254 (660)
Q Consensus 245 ------------------------~~v~~~--~~~~-------------------------------------------- 254 (660)
+....+ +...
T Consensus 243 ~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~ 322 (556)
T 4a2p_A 243 MSETEALMRTIYSVDTLSQNSKKDFGTQNYEHWIVVTQRKCRLLQLEDKEEESRICRALFICTEHLRKYNDALIISEDAR 322 (556)
T ss_dssp HHHHHHHHHHHCC---------CCCSSHHHHHHHHHHHHHHHHC---CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSC
T ss_pred HHHHHHHHHHHhhhhhhhcccccccchhhHHHHHHHHHHHHHhhcccccchhHHHHHHHHHHHHHHHHHHHHHHHhhhhh
Confidence 000000 0000
Q ss_pred ----------------------------------------------CchhHHHHHHHHHHHHHhcCCCCcEEEEcCCHHH
Q 006122 255 ----------------------------------------------PVSDYVQAAVSTVLLIHDKEPPGDILVFLTGQDD 288 (660)
Q Consensus 255 ----------------------------------------------~~~~~~~~~~~~~~~~~~~~~~~~iLVF~~~~~~ 288 (660)
.....+......+........++++||||++++.
T Consensus 323 ~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~K~~~L~~~l~~~~~~~~~~k~lVF~~~~~~ 402 (556)
T 4a2p_A 323 IIDALSYLTEFFTNVKNGPYTELEQHLTAKFQEKEPELIALSKDETNENPKLEELVCILDDAYRYNPQTRTLLFAKTRAL 402 (556)
T ss_dssp HHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHTTHHHHHHHHHCSSSCCHHHHHHHHHHHHHHHHCTTCCEEEEESSHHH
T ss_pred HHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHhhHHHHhhhhccCCCCCChHHHHHHHHHHHHhcCCCCceEEEEEccHHH
Confidence 0000011111111122222567899999999999
Q ss_pred HHHHHHHHHHHhhhcc---CCCCCeEEEEccCCCCHHHHhhhcCCCCC-CCcEEEEeCCCcccccCCCCeEEEEeCCCcc
Q 006122 289 IDATIQLLTEEARTSK---KNSSGLIILPLYSGLSRAEQEQVFSPTPR-GKRKVVISTNIAETSLTLEGIVYVVDSGFSK 364 (660)
Q Consensus 289 i~~l~~~L~~~~~~~~---~~~~~~~v~~lh~~l~~~~r~~v~~~f~~-g~~~vlvaT~i~e~Gidip~v~~VId~g~~k 364 (660)
++.+++.|.+...... ....+.....+||+|+.++|.++++.|++ |..+|||||+++++|||+|++++||+++.
T Consensus 403 ~~~l~~~L~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~R~~~~~~F~~~g~~~vLvaT~~~~~GiDip~v~~VI~~d~-- 480 (556)
T 4a2p_A 403 VSALKKCMEENPILNYIKPGVLMGRGRRDQTTGMTLPSQKGVLDAFKTSKDNRLLIATSVADEGIDIVQCNLVVLYEY-- 480 (556)
T ss_dssp HHHHHHHHTTCSGGGSCCEEC------------------------------CCEEEEEC-----------CEEEEETC--
T ss_pred HHHHHHHHHhCCCcceeeeeEEEccCCcccccccCHHHHHHHHHHhcccCceEEEEEcCchhcCCCchhCCEEEEeCC--
Confidence 9999999865310000 01124455677899999999999999999 99999999999999999999999999666
Q ss_pred ceeecCCCCcccceeeecCHHhHHHhhcccCCCCCcEEEEccChHHhhh
Q 006122 365 QRFYNPISDIENLVVAPISKASARQRAGRAGRVRPGKCYRLYTEEYFVK 413 (660)
Q Consensus 365 ~~~~~~~~~~~~l~~~~~s~~~~~QR~GRaGR~~~G~~~~l~~~~~~~~ 413 (660)
|.|..+|.||+|| ||.++|.||.++++...+.
T Consensus 481 ----------------p~s~~~~~Qr~GR-gR~~~g~~~~l~~~~~~~~ 512 (556)
T 4a2p_A 481 ----------------SGNVTKMIQVRGR-GRAAGSKCILVTSKTEVVE 512 (556)
T ss_dssp ----------------CSCHHHHHHC---------CCEEEEESCHHHHH
T ss_pred ----------------CCCHHHHHHhcCC-CCCCCceEEEEEeCcchHH
Confidence 7899999999999 9999999999999877654
No 36
>3oiy_A Reverse gyrase helicase domain; topoisomerase, DNA supercoiling, archaea, isomeras; 2.35A {Thermotoga maritima} PDB: 3p4y_A 3p4x_A*
Probab=100.00 E-value=7.1e-35 Score=314.57 Aligned_cols=308 Identities=17% Similarity=0.137 Sum_probs=204.4
Q ss_pred hHHHHhcCCCcHHHHHHHHHHHhcCCEEEEEcCCCCcHHHHHHHHHHhccccCCCeEEEEeCchHHHHHHHHHHHHHH--
Q 006122 41 SIEKQRQRLPVYKYRTAILYLVETHATTIIVGETGSGKTTQIPQYLKEAGWADGGRVIACTQPRRLAVQAVASRVAEE-- 118 (660)
Q Consensus 41 ~~~~~~~~lPi~~~~~~i~~~l~~~~~vii~apTGsGKT~~ip~~l~~~~~~~~~~~i~v~p~r~la~~~~~~~~~~~-- 118 (660)
+..+.......+++|.+++..+.++++++++||||||||...-..+... ...+.++++++|+++|+.|. ++++.+.
T Consensus 12 ~~l~~~~~~~~~~~Q~~~i~~i~~~~~~lv~apTGsGKT~~~l~~~~~~-~~~~~~~lil~Pt~~L~~q~-~~~~~~~~~ 89 (414)
T 3oiy_A 12 SFFKKKFGKDLTGYQRLWAKRIVQGKSFTMVAPTGVGKTTFGMMTALWL-ARKGKKSALVFPTVTLVKQT-LERLQKLAD 89 (414)
T ss_dssp HHHHHHHSSCCCHHHHHHHHHHTTTCCEECCSCSSSSHHHHHHHHHHHH-HTTTCCEEEEESSHHHHHHH-HHHHHHHCC
T ss_pred HHHHHhcCCCCCHHHHHHHHHHhcCCCEEEEeCCCCCHHHHHHHHHHHH-hcCCCEEEEEECCHHHHHHH-HHHHHHHcc
Confidence 3444444566779999999999999999999999999994221111221 13566789999999998764 3334443
Q ss_pred hCCeeeeEEeeeeecc-----ccCCCCCceEEEechHHHHHHHhcCCCCCCCcEEEEeCCCc---------CCcC-hhHH
Q 006122 119 MGVKVGEEVGYTIRFE-----DFTNKDLTAIKFLTDGVLLREMMDDPLLTKYSVIMVDEAHE---------RSIS-TDIL 183 (660)
Q Consensus 119 ~~~~~~~~vg~~~~~~-----~~~~~~~~~I~v~T~~~ll~~l~~~~~l~~~~~iIiDE~He---------r~~~-~d~l 183 (660)
.+..++...|.....+ .....+.++|+|+||+.|.+.+.. ..+.++++||+||||. +.++ .++.
T Consensus 90 ~~~~v~~~~g~~~~~~~~~~~~~l~~~~~~Iiv~Tp~~l~~~l~~-~~~~~~~~iViDEaH~~~~~~~~~d~~l~~~~~~ 168 (414)
T 3oiy_A 90 EKVKIFGFYSSMKKEEKEKFEKSFEEDDYHILVFSTQFVSKNREK-LSQKRFDFVFVDDVDAVLKASRNIDTLLMMVGIP 168 (414)
T ss_dssp SSCCEEECCTTSCHHHHHHHHHHHHHTCCSEEEEEHHHHHHCHHH-HTTCCCSEEEESCHHHHHHCHHHHHHHHHHTTCC
T ss_pred CCceEEEEECCCChhhHHHHHHHhhcCCCCEEEECHHHHHHHHHH-hccccccEEEEeChHhhhhccchhhhHHhhcCCc
Confidence 4556665555322100 011121489999999999876653 3367899999999993 2222 2222
Q ss_pred HHHHHHHHH-hc-----------CCceEEEeecccchH----H-HHHHhhcCCCCCCCcccccCCCCCCeEEEECCcccc
Q 006122 184 LGLLKKIQR-CR-----------SDLRLIISSATIEAK----S-MSAFFHARKGRRGLEGVELVPRLEPAILSVEGRGFN 246 (660)
Q Consensus 184 l~~l~~~~~-~~-----------~~~kii~~SAT~~~~----~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 246 (660)
..+++.+.. .+ ++.+++++|||+.+. . +..++.-... ........
T Consensus 169 ~~~~~~i~~~~~~~~~~~~l~~~~~~~~i~~SAT~~~~~~~~~~~~~~~~~~~~------------------~~~~~~~~ 230 (414)
T 3oiy_A 169 EEIIRKAFSTIKQGKIYERPKNLKPGILVVSSATAKPRGIRPLLFRDLLNFTVG------------------RLVSVARN 230 (414)
T ss_dssp HHHHHHHHHHHHHTCCCCCCTTCCCCEEEESSCCSSCCSSTTHHHHHHHSCCSS------------------CCCCCCCS
T ss_pred HHHHHHHHHhcccchhhhhcccCCCceEEEEecCCCcchhHHHHHHHhhccCcC------------------cccccccc
Confidence 221222222 22 678999999995222 2 2233321110 00011122
Q ss_pred ceEEecCCCchhHHHHHHHHHHHHHhcCCCCcEEEEcCCHHHHHHHHHHHHHHhhhccCCCCCeEEE-EccCCCCHHHHh
Q 006122 247 VQIHYVEEPVSDYVQAAVSTVLLIHDKEPPGDILVFLTGQDDIDATIQLLTEEARTSKKNSSGLIIL-PLYSGLSRAEQE 325 (660)
Q Consensus 247 v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iLVF~~~~~~i~~l~~~L~~~~~~~~~~~~~~~v~-~lh~~l~~~~r~ 325 (660)
+...+......+.+ ...+ .. .++++||||+++++++.+++.|.+. ++.+. .+||. +|+
T Consensus 231 i~~~~~~~~~~~~l---~~~l----~~-~~~~~lVF~~~~~~~~~l~~~L~~~---------~~~~~~~~h~~----~r~ 289 (414)
T 3oiy_A 231 ITHVRISSRSKEKL---VELL----EI-FRDGILIFAQTEEEGKELYEYLKRF---------KFNVGETWSEF----EKN 289 (414)
T ss_dssp EEEEEESSCCHHHH---HHHH----HH-HCSSEEEEESSHHHHHHHHHHHHHT---------TCCEEESSSCH----HHH
T ss_pred chheeeccCHHHHH---HHHH----HH-cCCCEEEEECCHHHHHHHHHHHHHc---------CCceehhhcCc----chH
Confidence 33333333222222 2222 11 2478999999999999999999875 67787 88985 444
Q ss_pred hhcCCCCCCCcEEEEe----CCCcccccCCCC-eEEEEeCCCccceeecCCCCcccceeee--cCHHhHHHhhcccCCCC
Q 006122 326 QVFSPTPRGKRKVVIS----TNIAETSLTLEG-IVYVVDSGFSKQRFYNPISDIENLVVAP--ISKASARQRAGRAGRVR 398 (660)
Q Consensus 326 ~v~~~f~~g~~~vlva----T~i~e~Gidip~-v~~VId~g~~k~~~~~~~~~~~~l~~~~--~s~~~~~QR~GRaGR~~ 398 (660)
++.|++|+.+|||| |+++++|+|+|+ |++||++|. | .|..+|.||+|||||.+
T Consensus 290 --~~~f~~g~~~vLvat~s~T~~~~~GiDip~~v~~VI~~~~------------------p~~~~~~~y~qr~GR~gR~g 349 (414)
T 3oiy_A 290 --FEDFKVGKINILIGVQAYYGKLTRGVDLPERIKYVIFWGT------------------PSGPDVYTYIQASGRSSRIL 349 (414)
T ss_dssp --HHHHHTTSCSEEEEECCTTCCCCCCCCCTTTCCEEEEESC------------------CTTTCHHHHHHHHGGGCCEE
T ss_pred --HHHHhCCCCeEEEEecCcCchhhccCccccccCEEEEECC------------------CCCCCHHHHHHHhCccccCC
Confidence 89999999999999 999999999999 999999777 7 79999999999999973
Q ss_pred -----CcEEEEccChHH
Q 006122 399 -----PGKCYRLYTEEY 410 (660)
Q Consensus 399 -----~G~~~~l~~~~~ 410 (660)
.|.|+.++.+..
T Consensus 350 ~~~~~~g~~i~~~~~~~ 366 (414)
T 3oiy_A 350 NGVLVKGVSVIFEEDEE 366 (414)
T ss_dssp TTEECCEEEEEECCCHH
T ss_pred CCCCcceEEEEEEccHH
Confidence 799999995443
No 37
>1yks_A Genome polyprotein [contains: flavivirin protease NS3 catalytic subunit]; helicase, flavivirus, DEAD-BOX, ATPase, rtpase, hydrolase; 1.80A {Yellow fever virus} SCOP: c.37.1.14 c.37.1.14 PDB: 1ymf_A*
Probab=100.00 E-value=5.8e-34 Score=308.23 Aligned_cols=290 Identities=20% Similarity=0.221 Sum_probs=192.8
Q ss_pred HHhcCCEEEEEcCCCCcHHHHHHHHHHhccccCCCeEEEEeCchHHHHHHHHHHHHHHhCCeeeeEEeeeeecc-ccCCC
Q 006122 61 LVETHATTIIVGETGSGKTTQIPQYLKEAGWADGGRVIACTQPRRLAVQAVASRVAEEMGVKVGEEVGYTIRFE-DFTNK 139 (660)
Q Consensus 61 ~l~~~~~vii~apTGsGKT~~ip~~l~~~~~~~~~~~i~v~p~r~la~~~~~~~~~~~~~~~~~~~vg~~~~~~-~~~~~ 139 (660)
++.++++++++||||||||......++......+.++++++|+++|+.|... .+. +..+ ++....- ....+
T Consensus 4 ~l~~g~~vlv~a~TGSGKT~~~l~~~l~~~~~~~~~~lil~Ptr~La~Q~~~-~l~---~~~v----~~~~~~~~~v~Tp 75 (440)
T 1yks_A 4 MLKKGMTTVLDFHPGAGKTRRFLPQILAECARRRLRTLVLAPTRVVLSEMKE-AFH---GLDV----KFHTQAFSAHGSG 75 (440)
T ss_dssp TTSTTCEEEECCCTTSSTTTTHHHHHHHHHHHTTCCEEEEESSHHHHHHHHH-HTT---TSCE----EEESSCCCCCCCS
T ss_pred HhhCCCCEEEEcCCCCCHHHHHHHHHHHHHHhcCCeEEEEcchHHHHHHHHH-HHh---cCCe----EEecccceeccCC
Confidence 3567899999999999999443222222212245678999999998776432 222 2222 2222221 12233
Q ss_pred CCceEEEechHHHHHHHhcCCCCCCCcEEEEeCCCcCCcChhHHHHHHHHHHHhcCCceEEEeecccchHHHHHHhhcCC
Q 006122 140 DLTAIKFLTDGVLLREMMDDPLLTKYSVIMVDEAHERSISTDILLGLLKKIQRCRSDLRLIISSATIEAKSMSAFFHARK 219 (660)
Q Consensus 140 ~~~~I~v~T~~~ll~~l~~~~~l~~~~~iIiDE~Her~~~~d~ll~~l~~~~~~~~~~kii~~SAT~~~~~~~~~~~~~~ 219 (660)
..-+-+.+.+.+...+.....+.++++|||||+|+.....+.....+..+.. .++.++++||||++... ..+...
T Consensus 76 -~~l~~~l~~~~l~~~~~~~~~~~~l~~vViDEah~~~~~~~~~~~~~~~~~~-~~~~~~l~~SAT~~~~~-~~~~~~-- 150 (440)
T 1yks_A 76 -REVIDAMCHATLTYRMLEPTRVVNWEVIIMDEAHFLDPASIAARGWAAHRAR-ANESATILMTATPPGTS-DEFPHS-- 150 (440)
T ss_dssp -SCCEEEEEHHHHHHHHTSSSCCCCCSEEEETTTTCCSHHHHHHHHHHHHHHH-TTSCEEEEECSSCTTCC-CSSCCC--
T ss_pred -ccceeeecccchhHhhhCcccccCccEEEEECccccCcchHHHHHHHHHHhc-cCCceEEEEeCCCCchh-hhhhhc--
Confidence 4556677888888888777779999999999999764444445555555443 46799999999985431 111100
Q ss_pred CCCCCcccccCCCCCCeEEEECCccccceEEecCCCchhHHHHHHHHHHHHHhcCCCCcEEEEcCCHHHHHHHHHHHHHH
Q 006122 220 GRRGLEGVELVPRLEPAILSVEGRGFNVQIHYVEEPVSDYVQAAVSTVLLIHDKEPPGDILVFLTGQDDIDATIQLLTEE 299 (660)
Q Consensus 220 ~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iLVF~~~~~~i~~l~~~L~~~ 299 (660)
..++..+. ..+......... ..+. ..++++||||+++++++.+++.|.+.
T Consensus 151 --------------~~~~~~~~-------~~~~~~~~~~~~----~~l~-----~~~~~~lVF~~s~~~a~~l~~~L~~~ 200 (440)
T 1yks_A 151 --------------NGEIEDVQ-------TDIPSEPWNTGH----DWIL-----ADKRPTAWFLPSIRAANVMAASLRKA 200 (440)
T ss_dssp --------------SSCEEEEE-------CCCCSSCCSSSC----HHHH-----HCCSCEEEECSCHHHHHHHHHHHHHT
T ss_pred --------------CCCeeEee-------eccChHHHHHHH----HHHH-----hcCCCEEEEeCCHHHHHHHHHHHHHc
Confidence 00111111 111111111111 1111 13678999999999999999999875
Q ss_pred hhhccCCCCCeEEEEccCCCCHHHHhhhcCCCCCCCcEEEEeCCCcccccCCCCeEEEEeCCCccceee-cCCCCcccce
Q 006122 300 ARTSKKNSSGLIILPLYSGLSRAEQEQVFSPTPRGKRKVVISTNIAETSLTLEGIVYVVDSGFSKQRFY-NPISDIENLV 378 (660)
Q Consensus 300 ~~~~~~~~~~~~v~~lh~~l~~~~r~~v~~~f~~g~~~vlvaT~i~e~Gidip~v~~VId~g~~k~~~~-~~~~~~~~l~ 378 (660)
++.+..+|| ++|.++++.|++|+.+|||||+++++|||+| +++|||+|+.+.++| +...++....
T Consensus 201 ---------~~~v~~lhg----~~R~~~~~~F~~g~~~vLVaT~v~e~GiDip-v~~VI~~g~~~~pv~~~~~~~~vi~~ 266 (440)
T 1yks_A 201 ---------GKSVVVLNR----KTFEREYPTIKQKKPDFILATDIAEMGANLC-VERVLDCRTAFKPVLVDEGRKVAIKG 266 (440)
T ss_dssp ---------TCCEEECCS----SSCC--------CCCSEEEESSSTTCCTTCC-CSEEEECCEEEEEEEETTTTEEEEEE
T ss_pred ---------CCCEEEecc----hhHHHHHhhhcCCCceEEEECChhheeeccC-ceEEEeCCccceeeecccccceeecc
Confidence 678999999 4788999999999999999999999999999 999999999888877 4444555556
Q ss_pred eeecCHHhHHHhhcccCCC--CCcEEEEccC
Q 006122 379 VAPISKASARQRAGRAGRV--RPGKCYRLYT 407 (660)
Q Consensus 379 ~~~~s~~~~~QR~GRaGR~--~~G~~~~l~~ 407 (660)
..|.+.++|.||+||+||. .+|.||.+++
T Consensus 267 ~~p~~~~~~~Qr~GR~GR~g~~~g~~~~l~~ 297 (440)
T 1yks_A 267 PLRISASSAAQRRGRIGRNPNRDGDSYYYSE 297 (440)
T ss_dssp EEECCHHHHHHHHTTSSCCTTCCCEEEEECS
T ss_pred ccccCHHHHHHhccccCCCCCCCceEEEEec
Confidence 6799999999999999996 6899999984
No 38
>2v6i_A RNA helicase; membrane, hydrolase, transmembrane, RNA replication, viral replication, nucleotide-binding; 2.10A {Kokobera virus} PDB: 2v6j_A
Probab=100.00 E-value=1.1e-33 Score=305.61 Aligned_cols=286 Identities=20% Similarity=0.195 Sum_probs=197.1
Q ss_pred cCCEEEEEcCCCCcHHHHH-HHHHHhccccCCCeEEEEeCchHHHHHHHHHHHHHHhCCeeeeEEeeeeeccccCCCCCc
Q 006122 64 THATTIIVGETGSGKTTQI-PQYLKEAGWADGGRVIACTQPRRLAVQAVASRVAEEMGVKVGEEVGYTIRFEDFTNKDLT 142 (660)
Q Consensus 64 ~~~~vii~apTGsGKT~~i-p~~l~~~~~~~~~~~i~v~p~r~la~~~~~~~~~~~~~~~~~~~vg~~~~~~~~~~~~~~ 142 (660)
++++++++||||||||... +.++... ...+.++++++|++.|+.| +.+.+. +..++...|. .+....+ ..
T Consensus 1 kg~~~lv~a~TGsGKT~~~l~~~l~~~-~~~g~~~lvl~Pt~~La~Q-~~~~~~---~~~v~~~~~~---~~~~~~~-~~ 71 (431)
T 2v6i_A 1 KRELTVLDLHPGAGKTRRVLPQLVREA-VKKRLRTVILAPTRVVASE-MYEALR---GEPIRYMTPA---VQSERTG-NE 71 (431)
T ss_dssp -CCEEEEECCTTSCTTTTHHHHHHHHH-HHTTCCEEEEESSHHHHHH-HHHHTT---TSCEEEC------------C-CC
T ss_pred CCCEEEEEcCCCCCHHHHHHHHHHHHH-HhCCCCEEEECcHHHHHHH-HHHHhC---CCeEEEEecC---ccccCCC-Cc
Confidence 4789999999999999443 3233222 2345678999999998766 333322 4444322221 1222333 56
Q ss_pred eEEEechHHHHHHHhcCCCCCCCcEEEEeCCCcCCcChhHHHHHHHHHHHhcCCceEEEeecccchHHHHHHhhcCCCCC
Q 006122 143 AIKFLTDGVLLREMMDDPLLTKYSVIMVDEAHERSISTDILLGLLKKIQRCRSDLRLIISSATIEAKSMSAFFHARKGRR 222 (660)
Q Consensus 143 ~I~v~T~~~ll~~l~~~~~l~~~~~iIiDE~Her~~~~d~ll~~l~~~~~~~~~~kii~~SAT~~~~~~~~~~~~~~~~~ 222 (660)
.+.++|.+.+.+.+..+..+.++++|||||+|.++...+.....++.+. .+++.++++||||++.. +..+.
T Consensus 72 ~~~~~~~~~l~~~l~~~~~~~~l~~vViDEaH~~~~~~~~~~~~l~~~~-~~~~~~~l~~SAT~~~~-~~~~~------- 142 (431)
T 2v6i_A 72 IVDFMCHSTFTMKLLQGVRVPNYNLYIMDEAHFLDPASVAARGYIETRV-SMGDAGAIFMTATPPGT-TEAFP------- 142 (431)
T ss_dssp SEEEEEHHHHHHHHHHTCCCCCCSEEEEESTTCCSHHHHHHHHHHHHHH-HTTSCEEEEEESSCTTC-CCSSC-------
T ss_pred eEEEEchHHHHHHHhcCccccCCCEEEEeCCccCCccHHHHHHHHHHHh-hCCCCcEEEEeCCCCcc-hhhhc-------
Confidence 7888999999988888777999999999999976554455555555554 34689999999999642 00000
Q ss_pred CCcccccCCCCCCeEEEECCccccceEEecCCCchhHHHHHHHHHHHHHhcCCCCcEEEEcCCHHHHHHHHHHHHHHhhh
Q 006122 223 GLEGVELVPRLEPAILSVEGRGFNVQIHYVEEPVSDYVQAAVSTVLLIHDKEPPGDILVFLTGQDDIDATIQLLTEEART 302 (660)
Q Consensus 223 ~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iLVF~~~~~~i~~l~~~L~~~~~~ 302 (660)
....++..+... +........ . .... ..++++||||+++++++.+++.|.+.
T Consensus 143 ---------~~~~~i~~~~~~-------~~~~~~~~~----~----~~l~-~~~~~~lVF~~~~~~~~~l~~~L~~~--- 194 (431)
T 2v6i_A 143 ---------PSNSPIIDEETR-------IPDKAWNSG----Y----EWIT-EFDGRTVWFVHSIKQGAEIGTCLQKA--- 194 (431)
T ss_dssp ---------CCSSCCEEEECC-------CCSSCCSSC----C----HHHH-SCSSCEEEECSSHHHHHHHHHHHHHT---
T ss_pred ---------CCCCceeecccc-------CCHHHHHHH----H----HHHH-cCCCCEEEEeCCHHHHHHHHHHHHHc---
Confidence 001112222111 111111111 1 1111 23678999999999999999999875
Q ss_pred ccCCCCCeEEEEccCCCCHHHHhhhcCCCCCCCcEEEEeCCCcccccCCCCeEEEEeCCCccceeecCCCCcccceeeec
Q 006122 303 SKKNSSGLIILPLYSGLSRAEQEQVFSPTPRGKRKVVISTNIAETSLTLEGIVYVVDSGFSKQRFYNPISDIENLVVAPI 382 (660)
Q Consensus 303 ~~~~~~~~~v~~lh~~l~~~~r~~v~~~f~~g~~~vlvaT~i~e~Gidip~v~~VId~g~~k~~~~~~~~~~~~l~~~~~ 382 (660)
++.+..+||+ +|.++++.|++|+.+|||||+++++|+|+| +.+||++|..+.++|| ..++......|.
T Consensus 195 ------~~~v~~lhg~----~r~~~~~~f~~g~~~vLVaT~v~e~GiDip-~~~VI~~g~~~~~v~d-~~~~vi~~~~p~ 262 (431)
T 2v6i_A 195 ------GKKVLYLNRK----TFESEYPKCKSEKWDFVITTDISEMGANFK-ADRVIDPRKTIKPILL-DGRVSMQGPIAI 262 (431)
T ss_dssp ------TCCEEEESTT----THHHHTTHHHHSCCSEEEECGGGGTSCCCC-CSEEEECCEEEEEEEE-TTEEEEEEEEEC
T ss_pred ------CCeEEEeCCc----cHHHHHHhhcCCCCeEEEECchHHcCcccC-CcEEEecCccccceec-ccceeecccccC
Confidence 6789999997 678899999999999999999999999999 9999999999999998 566666677899
Q ss_pred CHHhHHHhhcccCCCC-CcEEEEccC
Q 006122 383 SKASARQRAGRAGRVR-PGKCYRLYT 407 (660)
Q Consensus 383 s~~~~~QR~GRaGR~~-~G~~~~l~~ 407 (660)
+.++|.||+||+||.+ .+.|+.+|.
T Consensus 263 ~~~~~~Qr~GR~GR~g~~~~~~~~~~ 288 (431)
T 2v6i_A 263 TPASAAQRRGRIGRNPEKLGDIYAYS 288 (431)
T ss_dssp CHHHHHHHHTTSSCCTTCCCCEEEEC
T ss_pred CHHHHHHhhhccCCCCCCCCeEEEEc
Confidence 9999999999999984 333444443
No 39
>3tbk_A RIG-I helicase domain; DECH helicase, ATP binding, hydrolase; HET: ANP; 2.14A {Mus musculus}
Probab=100.00 E-value=2e-33 Score=314.74 Aligned_cols=345 Identities=17% Similarity=0.190 Sum_probs=192.9
Q ss_pred CCcHHHHHHHHHHHhcCCEEEEEcCCCCcHHHHHHHHHHhccc----cCCCeEEEEeCchHHHHHHH--HHHHHHHhCCe
Q 006122 49 LPVYKYRTAILYLVETHATTIIVGETGSGKTTQIPQYLKEAGW----ADGGRVIACTQPRRLAVQAV--ASRVAEEMGVK 122 (660)
Q Consensus 49 lPi~~~~~~i~~~l~~~~~vii~apTGsGKT~~ip~~l~~~~~----~~~~~~i~v~p~r~la~~~~--~~~~~~~~~~~ 122 (660)
+..+++|.+++..+..++++++.+|||||||.+....+..... ..++++++++|++.|+.|.. .+.+....+..
T Consensus 3 ~~~~~~Q~~~i~~~~~~~~~l~~~~tGsGKT~~~~~~~~~~~~~~~~~~~~~~lil~P~~~L~~q~~~~~~~~~~~~~~~ 82 (555)
T 3tbk_A 3 LKPRNYQLELALPAKKGKNTIICAPTGCGKTFVSLLICEHHLKKFPCGQKGKVVFFANQIPVYEQQATVFSRYFERLGYN 82 (555)
T ss_dssp CCCCHHHHHHHHHHHTTCCEEEECCTTSCHHHHHHHHHHHHHHTCCSSCCCCEEEECSSHHHHHHHHHHHHHHHHTTTCC
T ss_pred CCCcHHHHHHHHHHhCCCCEEEEeCCCChHHHHHHHHHHHHHHhcccCCCCEEEEEeCCHHHHHHHHHHHHHHhccCCcE
Confidence 4567899999999999999999999999999443333322211 12567899999999988743 33344445788
Q ss_pred eeeEEeeeeecccc-CCCCCceEEEechHHHHHHHhcCC--CCCCCcEEEEeCCCcCCcChhHHHHHHHHHHHh------
Q 006122 123 VGEEVGYTIRFEDF-TNKDLTAIKFLTDGVLLREMMDDP--LLTKYSVIMVDEAHERSISTDILLGLLKKIQRC------ 193 (660)
Q Consensus 123 ~~~~vg~~~~~~~~-~~~~~~~I~v~T~~~ll~~l~~~~--~l~~~~~iIiDE~Her~~~~d~ll~~l~~~~~~------ 193 (660)
++...|........ ......+|+|+||+.|.+.+.... .+.++++|||||||...-... ...++......
T Consensus 83 ~~~~~g~~~~~~~~~~~~~~~~i~v~T~~~l~~~~~~~~~~~~~~~~~vViDEah~~~~~~~-~~~~~~~~~~~~~~~~~ 161 (555)
T 3tbk_A 83 IASISGATSDSVSVQHIIEDNDIIILTPQILVNNLNNGAIPSLSVFTLMIFDECHNTSKNHP-YNQIMFRYLDHKLGESR 161 (555)
T ss_dssp EEEECTTTGGGSCHHHHHHHCSEEEECHHHHHHHHHTSSSCCGGGCSEEEETTGGGCSTTCH-HHHHHHHHHHHHTSSCC
T ss_pred EEEEcCCCcchhhHHHHhcCCCEEEECHHHHHHHHhcCcccccccCCEEEEECccccCCcch-HHHHHHHHHHhhhcccc
Confidence 87777744222110 001147999999999999887654 478899999999995443333 33333333322
Q ss_pred cCCceEEEeecccch----------HHHH---HHhhcCCCCCCCcc-c---ccCCCCCCeEEEECCccc-cce-------
Q 006122 194 RSDLRLIISSATIEA----------KSMS---AFFHARKGRRGLEG-V---ELVPRLEPAILSVEGRGF-NVQ------- 248 (660)
Q Consensus 194 ~~~~kii~~SAT~~~----------~~~~---~~~~~~~~~~~~~~-~---~~~~~~~~~~~~~~~~~~-~v~------- 248 (660)
.+..++++||||+.. +.+. ..++.......... . .................. +..
T Consensus 162 ~~~~~~l~lSAT~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 241 (555)
T 3tbk_A 162 DPLPQVVGLTASVGVGDAKTAEEAMQHICKLCAALDASVIATVRDNVAELEQVVYKPQKISRKVASRTSNTFKCIISQLM 241 (555)
T ss_dssp SCCCEEEEEESCCCCTTCCSHHHHHHHHHHHHHHTTCSEEECCCSCHHHHHTTCCCCCEEEEECCCCSCCHHHHHHHHHH
T ss_pred CCCCeEEEEecCcccCccccHHHHHHHHHHHHHhcCCeeeeccccCHHHHHhhcCCCceEEEEecCcccChHHHHHHHHH
Confidence 256899999999932 2222 22221100000000 0 000000000111110000 000
Q ss_pred ----------------------EE--------ecC----------CC---------------------------------
Q 006122 249 ----------------------IH--------YVE----------EP--------------------------------- 255 (660)
Q Consensus 249 ----------------------~~--------~~~----------~~--------------------------------- 255 (660)
.. +.. .+
T Consensus 242 ~~~~~~~~~~~~~l~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~ 321 (555)
T 3tbk_A 242 KETEKLAKDVSEELGKLFQIQNREFGTQKYEQWIVGVHKACSVFQMADKEEESRVCKALFLYTSHLRKYNDALIISEDAQ 321 (555)
T ss_dssp HHHHHHHHTSCHHHHGGGGCCSCCSSSHHHHHHHHHHHHHHHTCCCSSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSC
T ss_pred HHHHHHHHHHHHhhhhhhhcccccccchhhhHHHHHHHHHhhhhhccchhhHHHHHHHHHHHHHHHHHHHHHHhhhhhhh
Confidence 00 000 00
Q ss_pred -----------------------------------------------chhHHHHHHHHHHHHHhcCCCCcEEEEcCCHHH
Q 006122 256 -----------------------------------------------VSDYVQAAVSTVLLIHDKEPPGDILVFLTGQDD 288 (660)
Q Consensus 256 -----------------------------------------------~~~~~~~~~~~~~~~~~~~~~~~iLVF~~~~~~ 288 (660)
...........+.........+++||||++++.
T Consensus 322 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~l~~~l~~~~~~~~~~k~lVF~~~~~~ 401 (555)
T 3tbk_A 322 MTDALNYLKAFFHDVREAAFDETERELTRRFEEKLEELEKVSRDPSNENPKLRDLYLVLQEEYHLKPETKTILFVKTRAL 401 (555)
T ss_dssp HHHHHHHHHHHHHHHCC-----HHHHHHHHHHTTHHHHHHHHHCGGGCCHHHHHHHHHHHHHHHHCTTCCEEEECSSHHH
T ss_pred HHHHHHHHHHHHHHHhhcccchHHHHHHHHHhhhhhhhhhhccCCCcCCHHHHHHHHHHHHHhccCCCceEEEEeCcHHH
Confidence 000111111222222233566899999999999
Q ss_pred HHHHHHHHHHHhhhc---cCCCCCeEEEEccCCCCHHHHhhhcCCCCC-CCcEEEEeCCCcccccCCCCeEEEEeCCCcc
Q 006122 289 IDATIQLLTEEARTS---KKNSSGLIILPLYSGLSRAEQEQVFSPTPR-GKRKVVISTNIAETSLTLEGIVYVVDSGFSK 364 (660)
Q Consensus 289 i~~l~~~L~~~~~~~---~~~~~~~~v~~lh~~l~~~~r~~v~~~f~~-g~~~vlvaT~i~e~Gidip~v~~VId~g~~k 364 (660)
++.+++.|.+..... .....+.....+||+|+.++|.++++.|++ |..+|||||+++++|||+|++++||+++.
T Consensus 402 ~~~l~~~L~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~R~~~~~~F~~~g~~~vLvaT~~~~~GlDlp~v~~VI~~d~-- 479 (555)
T 3tbk_A 402 VDALKKWIEENPALSFLKPGILTGRGRTNRATGMTLPAQKCVLEAFRASGDNNILIATSVADEGIDIAECNLVILYEY-- 479 (555)
T ss_dssp HHHHHHHHHHCGGGTTCCEEECCC--------------------------CCSEEEECCCTTCCEETTSCSEEEEESC--
T ss_pred HHHHHHHHhhCcCcCceeeeEEEecCCcccccccCHHHHHHHHHHHhcCCCeeEEEEcchhhcCCccccCCEEEEeCC--
Confidence 999999998752100 001123445566789999999999999999 99999999999999999999999999544
Q ss_pred ceeecCCCCcccceeeecCHHhHHHhhcccCCCCCcEEEEccChHHhhh
Q 006122 365 QRFYNPISDIENLVVAPISKASARQRAGRAGRVRPGKCYRLYTEEYFVK 413 (660)
Q Consensus 365 ~~~~~~~~~~~~l~~~~~s~~~~~QR~GRaGR~~~G~~~~l~~~~~~~~ 413 (660)
|.|..+|.||+|| ||.++|.||.++++...+.
T Consensus 480 ----------------p~s~~~~~Qr~GR-gR~~~g~~~~l~~~~~~~~ 511 (555)
T 3tbk_A 480 ----------------VGNVIKMIQTRGR-GRARDSKCFLLTSSADVIE 511 (555)
T ss_dssp ----------------CSSCCCEECSSCC-CTTTSCEEEEEESCHHHHH
T ss_pred ----------------CCCHHHHHHhcCc-CcCCCceEEEEEcCCCHHH
Confidence 4455556699999 9999999999999876643
No 40
>4a2q_A RIG-I, retinoic acid inducible protein I; hydrolase, superfamily 2 RNA helicase, ATP and dsRNA binding antiviral signalling pathway; 3.40A {Anas platyrhynchos}
Probab=100.00 E-value=7.9e-33 Score=321.95 Aligned_cols=346 Identities=16% Similarity=0.146 Sum_probs=179.5
Q ss_pred CCCcHHHHHHHHHHHhcCCEEEEEcCCCCcHHHHHHHHHHhccc----cCCCeEEEEeCchHHHHHHH--HHHHHHHhCC
Q 006122 48 RLPVYKYRTAILYLVETHATTIIVGETGSGKTTQIPQYLKEAGW----ADGGRVIACTQPRRLAVQAV--ASRVAEEMGV 121 (660)
Q Consensus 48 ~lPi~~~~~~i~~~l~~~~~vii~apTGsGKT~~ip~~l~~~~~----~~~~~~i~v~p~r~la~~~~--~~~~~~~~~~ 121 (660)
.....++|.+++..+..++++++++|||||||.+....+..... ..++++++++|++.|+.|.. .+++....+.
T Consensus 246 ~~~l~~~Q~~~i~~~l~~~~~ll~~~TGsGKTl~~~~~i~~~l~~~~~~~~~~~Lvl~Pt~~L~~Q~~~~~~~~~~~~~~ 325 (797)
T 4a2q_A 246 TKKARSYQIELAQPAINGKNALICAPTGSGKTFVSILICEHHFQNMPAGRKAKVVFLATKVPVYEQQKNVFKHHFERQGY 325 (797)
T ss_dssp --CCCHHHHHHHHHHHTTCCEEEECCTTSCHHHHHHHHHHHHHHTCCSSCCCCEEEECSSHHHHHHHHHHHHHHHGGGTC
T ss_pred CCCCCHHHHHHHHHHHhCCCEEEEeCCCChHHHHHHHHHHHHHHhccccCCCeEEEEeCCHHHHHHHHHHHHHhcccCCc
Confidence 34567889999999998999999999999999443333322211 11567899999999988743 2333334478
Q ss_pred eeeeEEeeeeecccc-CCCCCceEEEechHHHHHHHhcCC--CCCCCcEEEEeCCCcCCcChhHHHHHHHHHHHh-----
Q 006122 122 KVGEEVGYTIRFEDF-TNKDLTAIKFLTDGVLLREMMDDP--LLTKYSVIMVDEAHERSISTDILLGLLKKIQRC----- 193 (660)
Q Consensus 122 ~~~~~vg~~~~~~~~-~~~~~~~I~v~T~~~ll~~l~~~~--~l~~~~~iIiDE~Her~~~~d~ll~~l~~~~~~----- 193 (660)
.++...|........ ......+|+|+||++|.+.+.... .+.++++|||||||...-.. ....++..+...
T Consensus 326 ~v~~~~g~~~~~~~~~~~~~~~~Ivv~Tp~~l~~~l~~~~~~~~~~~~~iViDEaH~~~~~~-~~~~i~~~~~~~~~~~~ 404 (797)
T 4a2q_A 326 SVQGISGENFSNVSVEKVIEDSDIIVVTPQILVNSFEDGTLTSLSIFTLMIFDECHNTTGNH-PYNVLMTRYLEQKFNSA 404 (797)
T ss_dssp CEEEECCC-----CHHHHHHTCSEEEECHHHHHHHHHSSSCCCGGGCSEEEETTGGGCSTTS-HHHHHHHHHHHHHHTTC
T ss_pred eEEEEeCCcchhhhHHHhhCCCCEEEEchHHHHHHHHhccccccccCCEEEEECccccCCCc-cHHHHHHHHHHHhhccC
Confidence 888777754222111 111157999999999999887654 37889999999999544333 344444444332
Q ss_pred cCCceEEEeecccch----------HHHH---HHhhcCCCCCCCcc----cccCCCCCCeEEEECCcc------------
Q 006122 194 RSDLRLIISSATIEA----------KSMS---AFFHARKGRRGLEG----VELVPRLEPAILSVEGRG------------ 244 (660)
Q Consensus 194 ~~~~kii~~SAT~~~----------~~~~---~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~------------ 244 (660)
.+..++++||||+.. +.+. ..++.......... .............+..+.
T Consensus 405 ~~~~~~l~lSATp~~~~~~~~~~~~~~i~~l~~~L~~~~i~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ 484 (797)
T 4a2q_A 405 SQLPQILGLTASVGVGNAKNIEETIEHICSLCSYLDIQAISTVRENIQELQRFMNKPEIDVRLVKRRIHNPFAAIISNLM 484 (797)
T ss_dssp CCCCEEEEEESCCCCTTCCSHHHHHHHHHHHHHHHTCSEEECCCTTHHHHHHHSCCCCCEEEECCCCSCCHHHHHHHHHH
T ss_pred CCCCeEEEEcCCccccccccHHHHHHHHHHHHHhcCCcEEecccccHHHHHHhcCCCceEEEecCCCCCcHHHHHHHHHH
Confidence 567899999999932 2222 22221110000000 000000111111111000
Q ss_pred -----------------------ccceEE--ec------------CCC--------------------------------
Q 006122 245 -----------------------FNVQIH--YV------------EEP-------------------------------- 255 (660)
Q Consensus 245 -----------------------~~v~~~--~~------------~~~-------------------------------- 255 (660)
+....+ +. ...
T Consensus 485 ~~i~~~~~~~~~l~~l~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~~~~~~~~~~~~~ 564 (797)
T 4a2q_A 485 SETEALMRTIYSVDTLSQNSKKDFGTQNYEHWIVVTQRKCRLLQLEDKEEESRICRALFICTEHLRKYNDALIISEDARI 564 (797)
T ss_dssp HHHHHHHHHC------------CCSSHHHHHHHHHHHHHHHHCCCSSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSCH
T ss_pred HHHHHHHHHHHhhHHhhhhccccccchhHHHHHHHHHHHHHHhcccccchhhHHHHHHHHHHHHHHHHHHHHhhhccccH
Confidence 000000 00 000
Q ss_pred ----------------------------------------------chhHHHHHHHHHHHHHhcCCCCcEEEEcCCHHHH
Q 006122 256 ----------------------------------------------VSDYVQAAVSTVLLIHDKEPPGDILVFLTGQDDI 289 (660)
Q Consensus 256 ----------------------------------------------~~~~~~~~~~~~~~~~~~~~~~~iLVF~~~~~~i 289 (660)
....+......+........++++||||++++.+
T Consensus 565 ~~~~~~l~~~~~~~~~~~~~~~~~~l~~~~~~~~~~l~~~~~~~~~~~~K~~~L~~lL~~~~~~~~~~kvLIF~~~~~~~ 644 (797)
T 4a2q_A 565 IDALSYLTEFFTNVKNGPYTELEQHLTAKFQEKEPELIALSKDETNENPKLEELVCILDDAYRYNPQTRTLLFAKTRALV 644 (797)
T ss_dssp HHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHTTHHHHHHHHHCTTCCCHHHHHHHHHHHHHHHHCSSCCEEEEESSHHHH
T ss_pred HHHHHHHHHHHHHHhccCccHHHHHHHHHHHHHHHHHHHhhcCCCCCChHHHHHHHHHHHHhccCCCCeEEEEECcHHHH
Confidence 0000011111111112235668999999999999
Q ss_pred HHHHHHHHHHhhhccC---CCCCeEEEEccCCCCHHHHhhhcCCCCC-CCcEEEEeCCCcccccCCCCeEEEEeCCCccc
Q 006122 290 DATIQLLTEEARTSKK---NSSGLIILPLYSGLSRAEQEQVFSPTPR-GKRKVVISTNIAETSLTLEGIVYVVDSGFSKQ 365 (660)
Q Consensus 290 ~~l~~~L~~~~~~~~~---~~~~~~v~~lh~~l~~~~r~~v~~~f~~-g~~~vlvaT~i~e~Gidip~v~~VId~g~~k~ 365 (660)
+.+++.|.+....... ...+.....+||+|+.++|..+++.|++ |..+|||||+++++|||+|++++||+++.
T Consensus 645 ~~L~~~L~~~~~~~~~~~~~l~G~~~~~~hg~~~~~eR~~~l~~F~~~g~~~vLVaT~~~~~GIDlp~v~~VI~yd~--- 721 (797)
T 4a2q_A 645 SALKKCMEENPILNYIKPGVLMGRGRRDQTTGMTLPSQKGVLDAFKTSKDNRLLIATSVADEGIDIVQCNLVVLYEY--- 721 (797)
T ss_dssp HHHHHHHHTCSTTCSCCCEEC----------------------------CCSEEEEECC-------CCCSEEEEESC---
T ss_pred HHHHHHHHhCcccccccceEEEecCCcccCCCCCHHHHHHHHHHhhccCCceEEEEcCchhcCCCchhCCEEEEeCC---
Confidence 9999999763100000 0124456678999999999999999999 99999999999999999999999999666
Q ss_pred eeecCCCCcccceeeecCHHhHHHhhcccCCCCCcEEEEccChHHhhh
Q 006122 366 RFYNPISDIENLVVAPISKASARQRAGRAGRVRPGKCYRLYTEEYFVK 413 (660)
Q Consensus 366 ~~~~~~~~~~~l~~~~~s~~~~~QR~GRaGR~~~G~~~~l~~~~~~~~ 413 (660)
|.|..+|.||+|| ||.++|.||.++++...+.
T Consensus 722 ---------------p~s~~~~iQr~GR-GR~~~g~~i~l~~~~~~ee 753 (797)
T 4a2q_A 722 ---------------SGNVTKMIQVRGR-GRAAGSKCILVTSKTEVVE 753 (797)
T ss_dssp ---------------CSCHHHHHTC--------CCCEEEEECCHHHHH
T ss_pred ---------------CCCHHHHHHhcCC-CCCCCceEEEEEeCCcHHH
Confidence 7889999999999 9999999999999876543
No 41
>2wv9_A Flavivirin protease NS2B regulatory subunit, FLAV protease NS3 catalytic subunit; nucleotide-binding, capsid protein; 2.75A {Murray valley encephalitis virus}
Probab=100.00 E-value=6.1e-33 Score=312.49 Aligned_cols=288 Identities=20% Similarity=0.250 Sum_probs=202.0
Q ss_pred HhcCCEEEEEcCCCCcHHHHH-HHHHHhccccCCCeEEEEeCchHHHHHHHHHHHHHHhCCeeeeEEeeeeec-cccCCC
Q 006122 62 VETHATTIIVGETGSGKTTQI-PQYLKEAGWADGGRVIACTQPRRLAVQAVASRVAEEMGVKVGEEVGYTIRF-EDFTNK 139 (660)
Q Consensus 62 l~~~~~vii~apTGsGKT~~i-p~~l~~~~~~~~~~~i~v~p~r~la~~~~~~~~~~~~~~~~~~~vg~~~~~-~~~~~~ 139 (660)
+.++++++++||||||||+.+ +.++.. ....+.++++++|+|+|+.|.. +.+. +..+ ++.... .....+
T Consensus 238 l~~g~dvlv~apTGSGKTl~~ll~il~~-l~~~~~~~lilaPTr~La~Q~~-~~l~---~~~i----~~~~~~l~~v~tp 308 (673)
T 2wv9_A 238 LKKRQLTVLDLHPGAGKTRRILPQIIKD-AIQKRLRTAVLAPTRVVAAEMA-EALR---GLPV----RYLTPAVQREHSG 308 (673)
T ss_dssp GSTTCEEEECCCTTTTTTTTHHHHHHHH-HHHTTCCEEEEESSHHHHHHHH-HHTT---TSCC----EECCC---CCCCS
T ss_pred HhcCCeEEEEeCCCCCHHHHHHHHHHHH-HHhCCCcEEEEccHHHHHHHHH-HHHh---cCCe----eeecccccccCCH
Confidence 348999999999999999442 222222 1234567899999999877643 3222 2222 222221 112233
Q ss_pred CCceEEEechHHHHHHHhcCCCCCCCcEEEEeCCCcCCcChhHHHHHHHHHHHhcCCceEEEeecccchHHHHHHhhcCC
Q 006122 140 DLTAIKFLTDGVLLREMMDDPLLTKYSVIMVDEAHERSISTDILLGLLKKIQRCRSDLRLIISSATIEAKSMSAFFHARK 219 (660)
Q Consensus 140 ~~~~I~v~T~~~ll~~l~~~~~l~~~~~iIiDE~Her~~~~d~ll~~l~~~~~~~~~~kii~~SAT~~~~~~~~~~~~~~ 219 (660)
...+.+++.+.+.+.+..+..+.++++|||||+|+.+...+.....++.... .++.++++||||++.. +..+..
T Consensus 309 -~~ll~~l~~~~l~~~l~~~~~l~~l~lvViDEaH~~~~~~~~~~~~l~~~~~-~~~~~vl~~SAT~~~~-i~~~~~--- 382 (673)
T 2wv9_A 309 -NEIVDVMCHATLTHRLMSPLRVPNYNLFVMDEAHFTDPASIAARGYIATRVE-AGEAAAIFMTATPPGT-SDPFPD--- 382 (673)
T ss_dssp -CCCEEEEEHHHHHHHHHSSSCCCCCSEEEEESTTCCCHHHHHHHHHHHHHHH-TTSCEEEEECSSCTTC-CCSSCC---
T ss_pred -HHHHHHHHhhhhHHHHhcccccccceEEEEeCCcccCccHHHHHHHHHHhcc-ccCCcEEEEcCCCChh-hhhhcc---
Confidence 5667888999998888887779999999999999765555555666665543 3678999999999532 000000
Q ss_pred CCCCCcccccCCCCCCeEEEECCccccceEEecCCCchhHHHHHHHHHHHHHhcCCCCcEEEEcCCHHHHHHHHHHHHHH
Q 006122 220 GRRGLEGVELVPRLEPAILSVEGRGFNVQIHYVEEPVSDYVQAAVSTVLLIHDKEPPGDILVFLTGQDDIDATIQLLTEE 299 (660)
Q Consensus 220 ~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iLVF~~~~~~i~~l~~~L~~~ 299 (660)
...++..+... +........+ ..+ . ..++++||||+++++++.+++.|.+.
T Consensus 383 -------------~~~~i~~v~~~-------~~~~~~~~~l----~~l----~-~~~~~~lVF~~s~~~~e~la~~L~~~ 433 (673)
T 2wv9_A 383 -------------TNSPVHDVSSE-------IPDRAWSSGF----EWI----T-DYAGKTVWFVASVKMSNEIAQCLQRA 433 (673)
T ss_dssp -------------CSSCEEEEECC-------CCSSCCSSCC----HHH----H-SCCSCEEEECSSHHHHHHHHHHHHTT
T ss_pred -------------cCCceEEEeee-------cCHHHHHHHH----HHH----H-hCCCCEEEEECCHHHHHHHHHHHHhC
Confidence 01112222211 1111111111 111 1 25788999999999999999999764
Q ss_pred hhhccCCCCCeEEEEccCCCCHHHHhhhcCCCCCCCcEEEEeCCCcccccCCCCeEEEEeCCCccce--eecCCCCcccc
Q 006122 300 ARTSKKNSSGLIILPLYSGLSRAEQEQVFSPTPRGKRKVVISTNIAETSLTLEGIVYVVDSGFSKQR--FYNPISDIENL 377 (660)
Q Consensus 300 ~~~~~~~~~~~~v~~lh~~l~~~~r~~v~~~f~~g~~~vlvaT~i~e~Gidip~v~~VId~g~~k~~--~~~~~~~~~~l 377 (660)
++.+..+||. +|.++++.|++|+.+|||||+++++|||+| +++|||+|....+ .||...++..+
T Consensus 434 ---------g~~v~~lHg~----eR~~v~~~F~~g~~~VLVaTdv~e~GIDip-v~~VI~~g~~~~p~vi~da~~r~~ll 499 (673)
T 2wv9_A 434 ---------GKRVIQLNRK----SYDTEYPKCKNGDWDFVITTDISEMGANFG-ASRVIDCRKSVKPTILDEGEGRVILS 499 (673)
T ss_dssp ---------TCCEEEECSS----SHHHHGGGGGTCCCSEEEECGGGGTTCCCC-CSEEEECCEECCEEEECSTTCEEEEC
T ss_pred ---------CCeEEEeChH----HHHHHHHHHHCCCceEEEECchhhcceeeC-CcEEEECCCcccceeeecccccceec
Confidence 6789999994 789999999999999999999999999999 9999999976554 36766566665
Q ss_pred eeeecCHHhHHHhhcccCCC--CCcEEEEccC
Q 006122 378 VVAPISKASARQRAGRAGRV--RPGKCYRLYT 407 (660)
Q Consensus 378 ~~~~~s~~~~~QR~GRaGR~--~~G~~~~l~~ 407 (660)
...|.|.++|.||+||+||. ++|.||.++.
T Consensus 500 ~d~P~s~~~y~Qr~GRaGR~~g~~G~ai~l~~ 531 (673)
T 2wv9_A 500 VPSAITSASAAQRRGRVGRNPSQIGDEYHYGG 531 (673)
T ss_dssp CSEECCHHHHHHHHTTSSCCSSCCCEEEEECS
T ss_pred ccCCCCHHHHHHHhhccCCCCCCCCEEEEEEe
Confidence 66799999999999999998 6899999974
No 42
>4gl2_A Interferon-induced helicase C domain-containing P; MDA5, dsRNA, anti-viral signaling, RIG-I, MAVS, oligomerizat helicase, ATPase; HET: ANP; 3.56A {Homo sapiens}
Probab=100.00 E-value=8.1e-34 Score=327.01 Aligned_cols=336 Identities=19% Similarity=0.199 Sum_probs=200.4
Q ss_pred cCCCcHHHHHHHHHHHhcCCEEEEEcCCCCcHHHHHHHHHHhc-----cccCCCeEEEEeCchHHHHHHHHHHHHHHhC-
Q 006122 47 QRLPVYKYRTAILYLVETHATTIIVGETGSGKTTQIPQYLKEA-----GWADGGRVIACTQPRRLAVQAVASRVAEEMG- 120 (660)
Q Consensus 47 ~~lPi~~~~~~i~~~l~~~~~vii~apTGsGKT~~ip~~l~~~-----~~~~~~~~i~v~p~r~la~~~~~~~~~~~~~- 120 (660)
..+.++++|.++++.+..++++++.+|||+|||.+....+... ....++++|+++|++.|+.|.+.+.+.+..+
T Consensus 4 ~~~~l~~~Q~~~i~~il~g~~~ll~~~TGsGKTl~~~~~i~~~l~~~~~~~~~~~vlvl~P~~~L~~Q~~~~~l~~~~~~ 83 (699)
T 4gl2_A 4 AMLQLRPYQMEVAQPALEGKNIIICLPTGCGKTRVAVYIAKDHLDKKKKASEPGKVIVLVNKVLLVEQLFRKEFQPFLKK 83 (699)
T ss_dssp ---CCCHHHHHHHHHHHSSCCEEECCCTTSCHHHHHHHHHHHHHHHHHHHTCCCCBCCEESCSHHHHHHHHHTHHHHHTT
T ss_pred CCCCccHHHHHHHHHHHhCCCEEEEcCCCCcHHHHHHHHHHHHHHhccccCCCCeEEEEECCHHHHHHHHHHHHHHHcCc
Confidence 4578899999999999999999999999999994443333221 1112366899999999988875666776665
Q ss_pred -CeeeeEEeeeeecccc--CCCCCceEEEechHHHHHHHhcC------C-CCCCCcEEEEeCCCcCCcChh----HHHHH
Q 006122 121 -VKVGEEVGYTIRFEDF--TNKDLTAIKFLTDGVLLREMMDD------P-LLTKYSVIMVDEAHERSISTD----ILLGL 186 (660)
Q Consensus 121 -~~~~~~vg~~~~~~~~--~~~~~~~I~v~T~~~ll~~l~~~------~-~l~~~~~iIiDE~Her~~~~d----~ll~~ 186 (660)
..++...|.....+.. ... ..+|+|+||+.|.+.+... . .+.++++|||||||. ..... .+..+
T Consensus 84 ~~~v~~~~g~~~~~~~~~~~~~-~~~Ilv~Tp~~L~~~l~~~~~~~~~~~~~~~~~lvViDEaH~-~~~~~~~~~i~~~~ 161 (699)
T 4gl2_A 84 WYRVIGLSGDTQLKISFPEVVK-SCDIIISTAQILENSLLNLENGEDAGVQLSDFSLIIIDECHH-TNKEAVYNNIMRHY 161 (699)
T ss_dssp TSCEEEEC----CCCCHHHHHH-SCSEEEEEHHHHHHHTC--------CCCGGGCSEEEEESGGG-CBTTBSSCSHHHHH
T ss_pred CceEEEEeCCcchhhHHHhhhc-CCCEEEECHHHHHHHHhccccccccceecccCcEEEEECccc-cCccchHHHHHHHH
Confidence 6777777754332211 112 6899999999999887432 2 378899999999993 32222 22222
Q ss_pred HHH-HHHhc---------CCceEEEeecccch----------HH---HHHHhhcCCCCCCCcc-cc---cCCCCCCeEEE
Q 006122 187 LKK-IQRCR---------SDLRLIISSATIEA----------KS---MSAFFHARKGRRGLEG-VE---LVPRLEPAILS 239 (660)
Q Consensus 187 l~~-~~~~~---------~~~kii~~SAT~~~----------~~---~~~~~~~~~~~~~~~~-~~---~~~~~~~~~~~ 239 (660)
+.. +.... +..++|+||||+.. +. +...++.......... .. ....+......
T Consensus 162 l~~~~~~~~~~~~~~~~~~~~~il~lTATp~~~~~~~~~~~~~~i~~l~~~l~~~~i~~~~~~~~~l~~~~~~p~~~~~~ 241 (699)
T 4gl2_A 162 LMQKLKNNRLKKENKPVIPLPQILGLTASPGVGGATKQAKAEEHILKLCANLDAFTIKTVKENLDQLKNQIQEPCKKFAI 241 (699)
T ss_dssp HHHHHHHHHHHC----CCCCCEEEEECSCCCCCSCCSHHHHHHHHHHHHHHHTCSCCCCCCTTHHHHHHHSCCCEEEEEE
T ss_pred HHhhhcccccccccccCCCCCEEEEecccccccccccHHHHHHHHHHHHhhcCCCEEEeecCchHHHhhhcCCCceEEEE
Confidence 222 22222 67899999999953 12 2223332111000000 00 00000000111
Q ss_pred ECCccc---------------------cceEE----ecC-----------------------------------------
Q 006122 240 VEGRGF---------------------NVQIH----YVE----------------------------------------- 253 (660)
Q Consensus 240 ~~~~~~---------------------~v~~~----~~~----------------------------------------- 253 (660)
...... |...+ |..
T Consensus 242 ~~~~~~~~~~~~l~~l~~~i~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~ 321 (699)
T 4gl2_A 242 ADATREDPFKEKLLEIMTRIQTYCQMSPMSDFGTQPYEQWAIQMEKKAAKEGNRKERVCAEHLRKYNEALQINDTIRMID 321 (699)
T ss_dssp EC-----CHHHHHHHHHHHHHHHHTCCCCSCSSSHHHHHHHHHHHHHHHHHTCTTTHHHHHHHHHHHHHHHHHHHSCHHH
T ss_pred cccccCChHHHHHHHHHHHHHHHhccCcchhccchHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 110000 00000 000
Q ss_pred ------------------------------CCchhHH-------------------------HHHHHHHHHHHhcCC-CC
Q 006122 254 ------------------------------EPVSDYV-------------------------QAAVSTVLLIHDKEP-PG 277 (660)
Q Consensus 254 ------------------------------~~~~~~~-------------------------~~~~~~~~~~~~~~~-~~ 277 (660)
.....++ ......+.......+ ++
T Consensus 322 ~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~l~~~~~~~~~~~~k~~~L~~~L~~~~~~~~~~~ 401 (699)
T 4gl2_A 322 AYTHLETFYNEEKDKKFAVIEDDLKKPLKLDETDRFLMTLFFENNKMLKRLAENPEYENEKLTKLRNTIMEQYTRTEESA 401 (699)
T ss_dssp HHHHHHHHHHHHHHHHC------------CCHHHHHHHHHHHHHHHHHHHHHTCCC----CSSCSHHHHHHHHHHSSSCC
T ss_pred HHHHHHHHHHHHHhhhccccccccccccccchhHHHHHHHHHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHHHhcCCCCC
Confidence 0000000 000111112122223 78
Q ss_pred cEEEEcCCHHHHHHHHHHHHHHhhhccCCCCCeEEEEccCC--------CCHHHHhhhcCCCCCCCcEEEEeCCCccccc
Q 006122 278 DILVFLTGQDDIDATIQLLTEEARTSKKNSSGLIILPLYSG--------LSRAEQEQVFSPTPRGKRKVVISTNIAETSL 349 (660)
Q Consensus 278 ~iLVF~~~~~~i~~l~~~L~~~~~~~~~~~~~~~v~~lh~~--------l~~~~r~~v~~~f~~g~~~vlvaT~i~e~Gi 349 (660)
++||||++++.++.+++.|.+.. .....++.+..+||+ |+.++|.++++.|++|+.+|||||+++++||
T Consensus 402 ~~IVF~~s~~~~~~l~~~L~~~~---~l~~~g~~~~~lhg~~~~~~~~~~~~~eR~~~~~~F~~g~~~VLVaT~~~~~GI 478 (699)
T 4gl2_A 402 RGIIFTKTRQSAYALSQWITENE---KFAEVGVKAHHLIGAGHSSEFKPMTQNEQKEVISKFRTGKINLLIATTVAEEGL 478 (699)
T ss_dssp CEEEECSCHHHHHHHHHHHHSSC---SCC-----CEECCCSCCCTTCCCCCHHHHHHHHHHHCC---CCSEEECSCCTTS
T ss_pred cEEEEECcHHHHHHHHHHHHhCc---cccccCcceEEEECCCCccCCCCCCHHHHHHHHHHHhcCCCcEEEEccccccCC
Confidence 89999999999999999997531 001126789999999 9999999999999999999999999999999
Q ss_pred CCCCeEEEEeCCCccceeecCCCCcccceeeecCHHhHHHhhcccCCCCCcEEEEccC
Q 006122 350 TLEGIVYVVDSGFSKQRFYNPISDIENLVVAPISKASARQRAGRAGRVRPGKCYRLYT 407 (660)
Q Consensus 350 dip~v~~VId~g~~k~~~~~~~~~~~~l~~~~~s~~~~~QR~GRaGR~~~G~~~~l~~ 407 (660)
|+|++++||++++ |.|..+|.||+|||||.+ .++.++.
T Consensus 479 Dip~v~~VI~~d~------------------p~s~~~~~Qr~GRArr~g--~~~~l~~ 516 (699)
T 4gl2_A 479 DIKECNIVIRYGL------------------VTNEIAMVQARGRARADE--STYVLVA 516 (699)
T ss_dssp CCCSCCCCEEESC------------------CCCHHHHHHHHTTSCSSS--CEEEEEE
T ss_pred ccccCCEEEEeCC------------------CCCHHHHHHHcCCCCCCC--ceEEEEE
Confidence 9999999999776 788999999999987754 4444443
No 43
>4a2w_A RIG-I, retinoic acid inducible protein I; hydrolase, superfamily 2 RNA helicase, ATP and dsRNA binding antiviral signalling pathway; 3.70A {Anas platyrhynchos}
Probab=99.98 E-value=8.1e-32 Score=316.77 Aligned_cols=346 Identities=16% Similarity=0.165 Sum_probs=180.5
Q ss_pred CCCcHHHHHHHHHHHhcCCEEEEEcCCCCcHHHHHHHHHHhccccC----CCeEEEEeCchHHHHHHHH--HHHHHHhCC
Q 006122 48 RLPVYKYRTAILYLVETHATTIIVGETGSGKTTQIPQYLKEAGWAD----GGRVIACTQPRRLAVQAVA--SRVAEEMGV 121 (660)
Q Consensus 48 ~lPi~~~~~~i~~~l~~~~~vii~apTGsGKT~~ip~~l~~~~~~~----~~~~i~v~p~r~la~~~~~--~~~~~~~~~ 121 (660)
.....++|.+++..+.+++++++.+|||||||.+....+....... ++++++++|++.|+.|... +++....+.
T Consensus 246 ~~~~r~~Q~~ai~~il~g~~~ll~a~TGsGKTl~~~~~i~~~l~~~~~~~~~~vLvl~Pt~~L~~Q~~~~~~~~~~~~~~ 325 (936)
T 4a2w_A 246 TKKARSYQIELAQPAINGKNALICAPTGSGKTFVSILICEHHFQNMPAGRKAKVVFLATKVPVYEQQKNVFKHHFERQGY 325 (936)
T ss_dssp --CCCHHHHHHHHHHHTTCCEEEECCTTSCHHHHHHHHHHTTTTTCCSSCCCCEEEECSSHHHHHHHHHHHHHHHHTTTC
T ss_pred CCCCCHHHHHHHHHHHcCCCEEEEeCCCchHHHHHHHHHHHHHHhccccCCCeEEEEeCCHHHHHHHHHHHHHHhcccCc
Confidence 4557788999999999999999999999999955444444332221 5678999999999887432 333334478
Q ss_pred eeeeEEeeeeecccc-CCCCCceEEEechHHHHHHHhcCCC--CCCCcEEEEeCCCcCCcChhHHHHHHHHHHHh-----
Q 006122 122 KVGEEVGYTIRFEDF-TNKDLTAIKFLTDGVLLREMMDDPL--LTKYSVIMVDEAHERSISTDILLGLLKKIQRC----- 193 (660)
Q Consensus 122 ~~~~~vg~~~~~~~~-~~~~~~~I~v~T~~~ll~~l~~~~~--l~~~~~iIiDE~Her~~~~d~ll~~l~~~~~~----- 193 (660)
.++...|........ ......+|+|+||++|.+.+..... +.++++|||||||...-. .....++..+...
T Consensus 326 ~v~~~~G~~~~~~~~~~~~~~~~IvI~Tp~~L~~~l~~~~~~~l~~~~liViDEaH~~~~~-~~~~~i~~~~~~~~~~~~ 404 (936)
T 4a2w_A 326 SVQGISGENFSNVSVEKVIEDSDIIVVTPQILVNSFEDGTLTSLSIFTLMIFDECHNTTGN-HPYNVLMTRYLEQKFNSA 404 (936)
T ss_dssp CEEEECCC-----CCHHHHHHCSEEEECHHHHHHHHHSSSCCCGGGCSEEEEETGGGCSTT-CHHHHHHHHHHHHHHTTC
T ss_pred eEEEEECCcchhhHHHHhccCCCEEEecHHHHHHHHHcCccccccCCCEEEEECccccCCC-ccHHHHHHHHHHHhhccC
Confidence 887777744221111 1111579999999999998876543 778999999999954433 2344444444332
Q ss_pred cCCceEEEeecccch----------HHHH---HHhhcCCCCCCCcc-c---ccCCCCCCeEEEECCc-------------
Q 006122 194 RSDLRLIISSATIEA----------KSMS---AFFHARKGRRGLEG-V---ELVPRLEPAILSVEGR------------- 243 (660)
Q Consensus 194 ~~~~kii~~SAT~~~----------~~~~---~~~~~~~~~~~~~~-~---~~~~~~~~~~~~~~~~------------- 243 (660)
.+..++++||||+.. +.+. ..++.......... . .....+.........+
T Consensus 405 ~~~~~~l~LSATp~~~~~~~l~~~~~~i~~L~~~L~~~~i~~~~~~~~~l~~~~~~p~~~~~~~~~~~~~~~~~~l~~l~ 484 (936)
T 4a2w_A 405 SQLPQILGLTASVGVGNAKNIEETIEHICSLCSYLDIQAISTVRENIQELQRFMNKPEIDVRLVKRRIHNPFAAIISNLM 484 (936)
T ss_dssp SCCCEEEEEESCCCCTTCCSHHHHHHHHHHHHHHHTCSEEECCCSSHHHHHHHSCCCCEEEEECCCCSCCHHHHHHHHHH
T ss_pred CCcCeEEEecCCcccccchhHHHHHHHHHHHHHhcCCceeecccccHHHHHHhccCCcceEEecccccCcHHHHHHHHHH
Confidence 566899999999932 1121 22221100000000 0 0000000001111100
Q ss_pred ----------------------cccceEE--ecC----------CCch--------------------------------
Q 006122 244 ----------------------GFNVQIH--YVE----------EPVS-------------------------------- 257 (660)
Q Consensus 244 ----------------------~~~v~~~--~~~----------~~~~-------------------------------- 257 (660)
.+....+ +.. .+..
T Consensus 485 ~~i~~~~~~~l~~~~l~~~~~~~~g~~~y~~~l~~l~k~~~~~~l~~~~~~~~~~~~l~~~~~~l~~~~~al~i~~~~~~ 564 (936)
T 4a2w_A 485 SETEALMRTIAYVDTLSQNSKKDFGTQNYEHWIVVTQRKCRLLQLEDKEEESRICRALFICTEHLRKYNDALIISEDARI 564 (936)
T ss_dssp HHHHHHHHHC------------CCSSHHHHHHHHHHHHHHHHCCCSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSCH
T ss_pred HHHHHHHHHHHhhhhhhhccccccchHHHHHHHHHHHHHHHHhcccccchhhHHHHHHHHHHHHHHHHHHHHhhhcchhH
Confidence 0000000 000 0000
Q ss_pred ----hHHHH----------------------------------------HHHHHHHHH----hcCCCCcEEEEcCCHHHH
Q 006122 258 ----DYVQA----------------------------------------AVSTVLLIH----DKEPPGDILVFLTGQDDI 289 (660)
Q Consensus 258 ----~~~~~----------------------------------------~~~~~~~~~----~~~~~~~iLVF~~~~~~i 289 (660)
.++.. ....+..+. ....++++|||+++++.+
T Consensus 565 ~~~~~~l~~~~~~~~~~~~~~~e~~l~~~~~~~~~~l~~~~~~~~~~~~K~~~L~~lL~~~~~~~~~~rvLIF~~t~~~a 644 (936)
T 4a2w_A 565 IDALSYLTEFFTNVKNGPYTELEQHLTAKFQEKEPELIALSKDETNENPKLEELVCILDDAYRYNPQTRTLLFAKTRALV 644 (936)
T ss_dssp HHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHHHHHTSTTCCCHHHHHHHHHHHHTTTSCTTCCEEEEESSHHHH
T ss_pred HHHHHHHHHHHHHHhhccCCHHHHHHHHHHHHHHHHHHHhhhccCCCCHHHHHHHHHHHHHhccCCCCeEEEEeCCHHHH
Confidence 00000 001111121 124568899999999999
Q ss_pred HHHHHHHHHHhhhccC---CCCCeEEEEccCCCCHHHHhhhcCCCCC-CCcEEEEeCCCcccccCCCCeEEEEeCCCccc
Q 006122 290 DATIQLLTEEARTSKK---NSSGLIILPLYSGLSRAEQEQVFSPTPR-GKRKVVISTNIAETSLTLEGIVYVVDSGFSKQ 365 (660)
Q Consensus 290 ~~l~~~L~~~~~~~~~---~~~~~~v~~lh~~l~~~~r~~v~~~f~~-g~~~vlvaT~i~e~Gidip~v~~VId~g~~k~ 365 (660)
+.+++.|.+....... ...+.....+||+|+..+|.++++.|++ |..+|||||+++++|||+|++++||+++.
T Consensus 645 e~L~~~L~~~~~l~~ik~~~l~G~~~~~~hg~m~~~eR~~il~~Fr~~g~~~VLVaT~~~~eGIDlp~v~~VI~yD~--- 721 (936)
T 4a2w_A 645 SALKKCMEENPILNYIKPGVLMGRGRRDQTTGMTLPSQKGVLDAFKTSKDNRLLIATSVADEGIDIVQCNLVVLYEY--- 721 (936)
T ss_dssp HHHHHHHHHCSTTSSCCCEEC----------------------------CCSEEEEECC------CCCCSEEEEESC---
T ss_pred HHHHHHHhhCccccccceeEEecCCCcccCCCCCHHHHHHHHHHhhccCCeeEEEEeCchhcCCcchhCCEEEEeCC---
Confidence 9999999874100000 0114456677999999999999999999 99999999999999999999999999665
Q ss_pred eeecCCCCcccceeeecCHHhHHHhhcccCCCCCcEEEEccChHHhhh
Q 006122 366 RFYNPISDIENLVVAPISKASARQRAGRAGRVRPGKCYRLYTEEYFVK 413 (660)
Q Consensus 366 ~~~~~~~~~~~l~~~~~s~~~~~QR~GRaGR~~~G~~~~l~~~~~~~~ 413 (660)
|.|..+|.||+|| ||.++|.||.|+++...+.
T Consensus 722 ---------------p~s~~~~iQr~GR-GR~~~g~vi~Li~~~t~ee 753 (936)
T 4a2w_A 722 ---------------SGNVTKMIQVRGR-GRAAGSKCILVTSKTEVVE 753 (936)
T ss_dssp ---------------CSCSHHHHCC--------CCCEEEEESCHHHHH
T ss_pred ---------------CCCHHHHHHhcCC-CCCCCCEEEEEEeCCCHHH
Confidence 7788899999999 9999999999999876543
No 44
>1gm5_A RECG; helicase, replication restart; HET: DNA ADP; 3.24A {Thermotoga maritima} SCOP: a.24.21.1 b.40.4.9 c.37.1.19 c.37.1.19
Probab=99.97 E-value=4.9e-32 Score=308.66 Aligned_cols=306 Identities=17% Similarity=0.196 Sum_probs=200.1
Q ss_pred cCCCcHHHHHHHHHHHhcC------CEEEEEcCCCCcHHHHHHHHHHhccccCCCeEEEEeCchHHHHHHHHHHHHHH--
Q 006122 47 QRLPVYKYRTAILYLVETH------ATTIIVGETGSGKTTQIPQYLKEAGWADGGRVIACTQPRRLAVQAVASRVAEE-- 118 (660)
Q Consensus 47 ~~lPi~~~~~~i~~~l~~~------~~vii~apTGsGKT~~ip~~l~~~~~~~~~~~i~v~p~r~la~~~~~~~~~~~-- 118 (660)
..+.....|.++++.+.++ .+++++||||||||......+... ...+.++++++|++.|+.|.. +++.+.
T Consensus 365 lpf~lt~~Q~~ai~~I~~~l~~~~~~~~Ll~a~TGSGKTlvall~il~~-l~~g~qvlvlaPtr~La~Q~~-~~l~~~~~ 442 (780)
T 1gm5_A 365 LPFKLTNAQKRAHQEIRNDMISEKPMNRLLQGDVGSGKTVVAQLAILDN-YEAGFQTAFMVPTSILAIQHY-RRTVESFS 442 (780)
T ss_dssp SSSCCCHHHHHHHHHHHHHHHSSSCCCCEEECCSSSSHHHHHHHHHHHH-HHHTSCEEEECSCHHHHHHHH-HHHHHHHT
T ss_pred CCCCCCHHHHHHHHHHHhhccccCCCcEEEEcCCCCCHHHHHHHHHHHH-HHcCCeEEEEeCcHHHHHHHH-HHHHHHhh
Confidence 4446788888888777654 479999999999995554444433 123567899999998887643 333333
Q ss_pred -hCCeeeeEEeeeeeccc------cCCCCCceEEEechHHHHHHHhcCCCCCCCcEEEEeCCCcCCcChhHHHHHHHHHH
Q 006122 119 -MGVKVGEEVGYTIRFED------FTNKDLTAIKFLTDGVLLREMMDDPLLTKYSVIMVDEAHERSISTDILLGLLKKIQ 191 (660)
Q Consensus 119 -~~~~~~~~vg~~~~~~~------~~~~~~~~I~v~T~~~ll~~l~~~~~l~~~~~iIiDE~Her~~~~d~ll~~l~~~~ 191 (660)
.+..++..+|.....+. .... ..+|+|+||+.+.+ ...+.++++|||||+|..+.... ..+.
T Consensus 443 ~~gi~v~~l~G~~~~~~r~~~~~~l~~g-~~~IvVgT~~ll~~----~~~~~~l~lVVIDEaHr~g~~qr------~~l~ 511 (780)
T 1gm5_A 443 KFNIHVALLIGATTPSEKEKIKSGLRNG-QIDVVIGTHALIQE----DVHFKNLGLVIIDEQHRFGVKQR------EALM 511 (780)
T ss_dssp CSSCCEEECCSSSCHHHHHHHHHHHHSS-CCCEEEECTTHHHH----CCCCSCCCEEEEESCCCC-----------CCCC
T ss_pred hcCceEEEEeCCCCHHHHHHHHHHHhcC-CCCEEEECHHHHhh----hhhccCCceEEecccchhhHHHH------HHHH
Confidence 36777776664322111 1122 58999999987743 44588999999999996432211 1122
Q ss_pred HhcCCceEEEeecccchHHHHHHhhcCCCCCCCcccccCCCCCCeEE-EECCccccceEEecCCCchhHHHHHHHHHHHH
Q 006122 192 RCRSDLRLIISSATIEAKSMSAFFHARKGRRGLEGVELVPRLEPAIL-SVEGRGFNVQIHYVEEPVSDYVQAAVSTVLLI 270 (660)
Q Consensus 192 ~~~~~~kii~~SAT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~ 270 (660)
....+.++++||||+.+..+...+..... ..++ ..+....++...+...... ......+...
T Consensus 512 ~~~~~~~vL~mSATp~p~tl~~~~~g~~~--------------~s~i~~~p~~r~~i~~~~~~~~~~---~~l~~~i~~~ 574 (780)
T 1gm5_A 512 NKGKMVDTLVMSATPIPRSMALAFYGDLD--------------VTVIDEMPPGRKEVQTMLVPMDRV---NEVYEFVRQE 574 (780)
T ss_dssp SSSSCCCEEEEESSCCCHHHHHHHTCCSS--------------CEEECCCCSSCCCCEECCCCSSTH---HHHHHHHHHH
T ss_pred HhCCCCCEEEEeCCCCHHHHHHHHhCCcc--------------eeeeeccCCCCcceEEEEeccchH---HHHHHHHHHH
Confidence 23356899999999977766644322210 0011 1122233555444433322 2223333222
Q ss_pred HhcCCCCcEEEEcCCHHHH--------HHHHHHHHHHhhhccCCCCCeEEEEccCCCCHHHHhhhcCCCCCCCcEEEEeC
Q 006122 271 HDKEPPGDILVFLTGQDDI--------DATIQLLTEEARTSKKNSSGLIILPLYSGLSRAEQEQVFSPTPRGKRKVVIST 342 (660)
Q Consensus 271 ~~~~~~~~iLVF~~~~~~i--------~~l~~~L~~~~~~~~~~~~~~~v~~lh~~l~~~~r~~v~~~f~~g~~~vlvaT 342 (660)
. ..+++++|||++.++. +.+++.|.+. ..+++.+..+||+|++++|..+++.|++|+.+|||||
T Consensus 575 l--~~g~qvlVf~~~ie~se~l~~~~a~~l~~~L~~~------~~~~~~v~~lHG~m~~~eR~~v~~~F~~G~~~ILVaT 646 (780)
T 1gm5_A 575 V--MRGGQAFIVYPLIEESDKLNVKSAVEMYEYLSKE------VFPEFKLGLMHGRLSQEEKDRVMLEFAEGRYDILVST 646 (780)
T ss_dssp T--TTSCCBCCBCCCC--------CHHHHHHHSGGGS------CC---CBCCCCSSSCCSCSHHHHHHHTTTSSSBCCCS
T ss_pred H--hcCCcEEEEecchhhhhhhhHHHHHHHHHHHHhh------hcCCCcEEEEeCCCCHHHHHHHHHHHHCCCCeEEEEC
Confidence 2 3567899999977553 4444444320 1236789999999999999999999999999999999
Q ss_pred CCcccccCCCCeEEEEeCCCccceeecCCCCcccceeeecCHHhHHHhhcccCCC-CCcEEEEccC
Q 006122 343 NIAETSLTLEGIVYVVDSGFSKQRFYNPISDIENLVVAPISKASARQRAGRAGRV-RPGKCYRLYT 407 (660)
Q Consensus 343 ~i~e~Gidip~v~~VId~g~~k~~~~~~~~~~~~l~~~~~s~~~~~QR~GRaGR~-~~G~~~~l~~ 407 (660)
+++++|||+|++++||..+. . ..+.+++.||+||+||. .+|.||.+++
T Consensus 647 ~vie~GIDiP~v~~VIi~d~--------~---------r~~l~~l~Qr~GRaGR~g~~g~~ill~~ 695 (780)
T 1gm5_A 647 TVIEVGIDVPRANVMVIENP--------E---------RFGLAQLHQLRGRVGRGGQEAYCFLVVG 695 (780)
T ss_dssp SCCCSCSCCTTCCEEEBCSC--------S---------SSCTTHHHHHHHTSCCSSTTCEEECCCC
T ss_pred CCCCccccCCCCCEEEEeCC--------C---------CCCHHHHHHHhcccCcCCCCCEEEEEEC
Confidence 99999999999999998543 2 12566788999999998 8999999997
No 45
>2eyq_A TRCF, transcription-repair coupling factor; MFD, SF2 ATPase, hydrolase; HET: EPE; 3.20A {Escherichia coli} SCOP: b.34.18.1 c.37.1.19 c.37.1.19 c.37.1.19 c.37.1.19 d.315.1.1
Probab=99.97 E-value=5e-30 Score=305.69 Aligned_cols=306 Identities=16% Similarity=0.163 Sum_probs=208.5
Q ss_pred CCCcHHHHHHHHHHHhc----CC--EEEEEcCCCCcHHHHHHHHHHhccccCCCeEEEEeCchHHHHHHHHHHHHHHh--
Q 006122 48 RLPVYKYRTAILYLVET----HA--TTIIVGETGSGKTTQIPQYLKEAGWADGGRVIACTQPRRLAVQAVASRVAEEM-- 119 (660)
Q Consensus 48 ~lPi~~~~~~i~~~l~~----~~--~vii~apTGsGKT~~ip~~l~~~~~~~~~~~i~v~p~r~la~~~~~~~~~~~~-- 119 (660)
.....+.|.++++.+.+ ++ +++++||||+|||.+....+... ...+.++++++|++.|+.| +.+++.+.+
T Consensus 601 ~~~~t~~Q~~ai~~il~~~~~g~p~d~ll~~~TGsGKT~val~aa~~~-~~~g~~vlvlvPt~~La~Q-~~~~~~~~~~~ 678 (1151)
T 2eyq_A 601 PFETTPDQAQAINAVLSDMCQPLAMDRLVCGDVGFGKTEVAMRAAFLA-VDNHKQVAVLVPTTLLAQQ-HYDNFRDRFAN 678 (1151)
T ss_dssp CSCCCHHHHHHHHHHHHHHHSSSCCEEEEECCCCTTTHHHHHHHHHHH-HTTTCEEEEECSSHHHHHH-HHHHHHHHSTT
T ss_pred CCCCCHHHHHHHHHHHHHHhcCCcCcEEEECCCCCCHHHHHHHHHHHH-HHhCCeEEEEechHHHHHH-HHHHHHHHhhc
Confidence 33347888888777654 55 89999999999995543333322 2245678888988888765 444444443
Q ss_pred -CCeeeeEEeeeeecccc-----CCCCCceEEEechHHHHHHHhcCCCCCCCcEEEEeCCCcCCcChhHHHHHHHHHHHh
Q 006122 120 -GVKVGEEVGYTIRFEDF-----TNKDLTAIKFLTDGVLLREMMDDPLLTKYSVIMVDEAHERSISTDILLGLLKKIQRC 193 (660)
Q Consensus 120 -~~~~~~~vg~~~~~~~~-----~~~~~~~I~v~T~~~ll~~l~~~~~l~~~~~iIiDE~Her~~~~d~ll~~l~~~~~~ 193 (660)
+..++...|+....+.. ...+..+|+|+|++.+. .+..+.++++|||||+|..+. .....+...
T Consensus 679 ~~i~v~~l~~~~~~~~~~~~~~~l~~g~~dIvV~T~~ll~----~~~~~~~l~lvIiDEaH~~g~------~~~~~l~~l 748 (1151)
T 2eyq_A 679 WPVRIEMISRFRSAKEQTQILAEVAEGKIDILIGTHKLLQ----SDVKFKDLGLLIVDEEHRFGV------RHKERIKAM 748 (1151)
T ss_dssp TTCCEEEESTTSCHHHHHHHHHHHHTTCCSEEEECTHHHH----SCCCCSSEEEEEEESGGGSCH------HHHHHHHHH
T ss_pred CCCeEEEEeCCCCHHHHHHHHHHHhcCCCCEEEECHHHHh----CCccccccceEEEechHhcCh------HHHHHHHHh
Confidence 44555554432211110 11225899999998653 344588999999999996332 122333344
Q ss_pred cCCceEEEeecccchHHHHHHhhcCCCCCCCcccccCCCCCCeEEEE-CCccccceEEecCCCchhHHHHHHHHHHHHHh
Q 006122 194 RSDLRLIISSATIEAKSMSAFFHARKGRRGLEGVELVPRLEPAILSV-EGRGFNVQIHYVEEPVSDYVQAAVSTVLLIHD 272 (660)
Q Consensus 194 ~~~~kii~~SAT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~ 272 (660)
+++.++++||||+.+..+...+..... ...+.. +....++..+.......... ..+....
T Consensus 749 ~~~~~vl~lSATp~p~~l~~~~~~~~~--------------~~~i~~~~~~r~~i~~~~~~~~~~~i~----~~il~~l- 809 (1151)
T 2eyq_A 749 RANVDILTLTATPIPRTLNMAMSGMRD--------------LSIIATPPARRLAVKTFVREYDSMVVR----EAILREI- 809 (1151)
T ss_dssp HTTSEEEEEESSCCCHHHHHHHTTTSE--------------EEECCCCCCBCBCEEEEEEECCHHHHH----HHHHHHH-
T ss_pred cCCCCEEEEcCCCChhhHHHHHhcCCC--------------ceEEecCCCCccccEEEEecCCHHHHH----HHHHHHH-
Confidence 567899999999976666655443220 001111 11223444444333222222 2222222
Q ss_pred cCCCCcEEEEcCCHHHHHHHHHHHHHHhhhccCCCCCeEEEEccCCCCHHHHhhhcCCCCCCCcEEEEeCCCcccccCCC
Q 006122 273 KEPPGDILVFLTGQDDIDATIQLLTEEARTSKKNSSGLIILPLYSGLSRAEQEQVFSPTPRGKRKVVISTNIAETSLTLE 352 (660)
Q Consensus 273 ~~~~~~iLVF~~~~~~i~~l~~~L~~~~~~~~~~~~~~~v~~lh~~l~~~~r~~v~~~f~~g~~~vlvaT~i~e~Gidip 352 (660)
..+++++|||+++++++.+++.|.+.. ++..+..+||+|+..+|.++++.|++|+.+|||||+++++|+|+|
T Consensus 810 -~~g~qvlvf~~~v~~~~~l~~~L~~~~-------p~~~v~~lhg~~~~~eR~~il~~F~~g~~~VLVaT~v~e~GiDip 881 (1151)
T 2eyq_A 810 -LRGGQVYYLYNDVENIQKAAERLAELV-------PEARIAIGHGQMRERELERVMNDFHHQRFNVLVCTTIIETGIDIP 881 (1151)
T ss_dssp -TTTCEEEEECCCSSCHHHHHHHHHHHC-------TTSCEEECCSSCCHHHHHHHHHHHHTTSCCEEEESSTTGGGSCCT
T ss_pred -hcCCeEEEEECCHHHHHHHHHHHHHhC-------CCCeEEEEeCCCCHHHHHHHHHHHHcCCCcEEEECCcceeeeccc
Confidence 357889999999999999999998863 367899999999999999999999999999999999999999999
Q ss_pred CeEEEEeCCCccceeecCCCCcccceeeecCHHhHHHhhcccCCC-CCcEEEEccChH
Q 006122 353 GIVYVVDSGFSKQRFYNPISDIENLVVAPISKASARQRAGRAGRV-RPGKCYRLYTEE 409 (660)
Q Consensus 353 ~v~~VId~g~~k~~~~~~~~~~~~l~~~~~s~~~~~QR~GRaGR~-~~G~~~~l~~~~ 409 (660)
++++||..+. . +.+.+++.||+||+||. ++|.||.+++++
T Consensus 882 ~v~~VIi~~~--------~---------~~~l~~l~Qr~GRvgR~g~~g~~~ll~~~~ 922 (1151)
T 2eyq_A 882 TANTIIIERA--------D---------HFGLAQLHQLRGRVGRSHHQAYAWLLTPHP 922 (1151)
T ss_dssp TEEEEEETTT--------T---------SSCHHHHHHHHTTCCBTTBCEEEEEEECCG
T ss_pred CCcEEEEeCC--------C---------CCCHHHHHHHHhccCcCCCceEEEEEECCc
Confidence 9999996322 1 33567899999999998 789999998764
No 46
>4ddu_A Reverse gyrase; topoisomerase, DNA supercoiling, archaea, helicase, hydrolas; 3.00A {Thermotoga maritima} PDB: 4ddt_A 4ddv_A 4ddw_A 4ddx_A
Probab=99.97 E-value=2.4e-30 Score=306.51 Aligned_cols=274 Identities=16% Similarity=0.120 Sum_probs=178.9
Q ss_pred cCCCcHHHHHHHHHHHhcCCEEEEEcCCCCcHHHHHHHHHHhccccCCCeEEEEeCchHHHHHHHHHHHHH--HhCCeee
Q 006122 47 QRLPVYKYRTAILYLVETHATTIIVGETGSGKTTQIPQYLKEAGWADGGRVIACTQPRRLAVQAVASRVAE--EMGVKVG 124 (660)
Q Consensus 47 ~~lPi~~~~~~i~~~l~~~~~vii~apTGsGKT~~ip~~l~~~~~~~~~~~i~v~p~r~la~~~~~~~~~~--~~~~~~~ 124 (660)
......+.|.+++..+.++++++++||||||||...-..+... ...+.++++++|+|+|+.|.. +++.+ ..+..++
T Consensus 75 ~gf~pt~iQ~~ai~~il~g~dvlv~ApTGSGKTl~~l~~il~~-~~~~~~~Lil~PtreLa~Q~~-~~l~~l~~~~i~v~ 152 (1104)
T 4ddu_A 75 FGKDLTGYQRLWAKRIVQGKSFTMVAPTGVGKTTFGMMTALWL-ARKGKKSALVFPTVTLVKQTL-ERLQKLADEKVKIF 152 (1104)
T ss_dssp SSSCCCHHHHHHHHHHTTTCCEEECCSTTCCHHHHHHHHHHHH-HTTTCCEEEEESSHHHHHHHH-HHHHTTSCTTSCEE
T ss_pred cCCCCCHHHHHHHHHHHcCCCEEEEeCCCCcHHHHHHHHHHHH-HhcCCeEEEEechHHHHHHHH-HHHHHhhCCCCeEE
Confidence 3446778888999999999999999999999995322222221 235677899999999987643 33333 2345666
Q ss_pred eEEeeeeecc-----ccCCCCCceEEEechHHHHHHHhcCCCCCCCcEEEEeCCCcCCcCh---hHHHH-------HHHH
Q 006122 125 EEVGYTIRFE-----DFTNKDLTAIKFLTDGVLLREMMDDPLLTKYSVIMVDEAHERSIST---DILLG-------LLKK 189 (660)
Q Consensus 125 ~~vg~~~~~~-----~~~~~~~~~I~v~T~~~ll~~l~~~~~l~~~~~iIiDE~Her~~~~---d~ll~-------~l~~ 189 (660)
..+|.....+ .......++|+|+||+.|++.+.. ..+.++++|||||||+..... |-++. .++.
T Consensus 153 ~l~Gg~~~~er~~~~~~l~~g~~~IlV~Tp~rL~~~l~~-l~~~~l~~lViDEaH~l~~~~r~~Dr~L~~~gf~~~~i~~ 231 (1104)
T 4ddu_A 153 GFYSSMKKEEKEKFEKSFEEDDYHILVFSTQFVSKNREK-LSQKRFDFVFVDDVDAVLKASRNIDTLLMMVGIPEEIIRK 231 (1104)
T ss_dssp EECTTCCTTHHHHHHHHHHTSCCSEEEEEHHHHHHSHHH-HHTSCCSEEEESCHHHHTTSSHHHHHHHHTSSCCHHHHHH
T ss_pred EEeCCCCHHHHHHHHHHHhCCCCCEEEECHHHHHHHHHh-hcccCcCEEEEeCCCccccccccchhhhHhcCCCHHHHHH
Confidence 6666332200 011121489999999999877653 337789999999999422111 22222 1222
Q ss_pred HHH-hc-----------CCceEEEeecccchH-----HHHHHhhcCCCCCCCcccccCCCCCCeEEEECCccccceEEec
Q 006122 190 IQR-CR-----------SDLRLIISSATIEAK-----SMSAFFHARKGRRGLEGVELVPRLEPAILSVEGRGFNVQIHYV 252 (660)
Q Consensus 190 ~~~-~~-----------~~~kii~~SAT~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~ 252 (660)
+.. .+ ++.+++++|||+.+. .+..++.-.. .........+...+.
T Consensus 232 il~~l~~~~~~~~~~~~~~~q~ll~SAT~~p~~~~~~~~~~~l~i~v------------------~~~~~~~~~i~~~~~ 293 (1104)
T 4ddu_A 232 AFSTIKQGKIYERPKNLKPGILVVSSATAKPRGIRPLLFRDLLNFTV------------------GRLVSVARNITHVRI 293 (1104)
T ss_dssp HHHHHHHTSCCCCCSSCCCCEEEEECBSSCCCSSTTHHHHHHTCCCC------------------CBCCCCCCCEEEEEE
T ss_pred HHHhcccchhhhhhccCCCceEEEEcCCCCcHHHHHHHhhcceeEEe------------------ccCCCCcCCceeEEE
Confidence 222 22 678999999995332 2222222110 000111223344444
Q ss_pred CCCchhHHHHHHHHHHHHHhcCCCCcEEEEcCCHHHHHHHHHHHHHHhhhccCCCCCeEEE-EccCCCCHHHHhhhcCCC
Q 006122 253 EEPVSDYVQAAVSTVLLIHDKEPPGDILVFLTGQDDIDATIQLLTEEARTSKKNSSGLIIL-PLYSGLSRAEQEQVFSPT 331 (660)
Q Consensus 253 ~~~~~~~~~~~~~~~~~~~~~~~~~~iLVF~~~~~~i~~l~~~L~~~~~~~~~~~~~~~v~-~lh~~l~~~~r~~v~~~f 331 (660)
.......+ ...+ .. .++++||||++++.++.++..|.+. ++.+. .+||. |.+ ++.|
T Consensus 294 ~~~k~~~L---~~ll----~~-~~~~~LVF~~s~~~a~~l~~~L~~~---------g~~~~~~lhg~-----rr~-l~~F 350 (1104)
T 4ddu_A 294 SSRSKEKL---VELL----EI-FRDGILIFAQTEEEGKELYEYLKRF---------KFNVGETWSEF-----EKN-FEDF 350 (1104)
T ss_dssp SCCCHHHH---HHHH----HH-HCSSEEEEESSSHHHHHHHHHHHHT---------TCCEEESSSSH-----HHH-HHHH
T ss_pred ecCHHHHH---HHHH----Hh-cCCCEEEEECcHHHHHHHHHHHHhC---------CCCeeeEecCc-----HHH-HHHH
Confidence 33222222 2222 11 2478999999999999999999875 67787 99982 455 9999
Q ss_pred CCCCcEEEEe----CCCcccccCCCC-eEEEEeCCCcc
Q 006122 332 PRGKRKVVIS----TNIAETSLTLEG-IVYVVDSGFSK 364 (660)
Q Consensus 332 ~~g~~~vlva----T~i~e~Gidip~-v~~VId~g~~k 364 (660)
++|+.+|||| |+++++|||+|+ |++||++|+.+
T Consensus 351 ~~G~~~VLVatas~TdvlarGIDip~~V~~VI~~d~P~ 388 (1104)
T 4ddu_A 351 KVGKINILIGVQAYYGKLTRGVDLPERIKYVIFWGTPS 388 (1104)
T ss_dssp HHTSCSEEEEETTTHHHHCCSCCCTTTCCEEEEESCCE
T ss_pred HCCCCCEEEEecCCCCeeEecCcCCCCCCEEEEECCCC
Confidence 9999999999 999999999999 99999999977
No 47
>1gku_B Reverse gyrase, TOP-RG; topoisomerase, DNA supercoiling, archaea, helicase; 2.7A {Archaeoglobus fulgidus} SCOP: c.37.1.16 c.37.1.16 e.10.1.1 PDB: 1gl9_B*
Probab=99.96 E-value=2.8e-30 Score=306.09 Aligned_cols=273 Identities=17% Similarity=0.120 Sum_probs=174.2
Q ss_pred cCCCcHHHHHHHHHHHhcCCEEEEEcCCCCcHH-HHHHHHHHhccccCCCeEEEEeCchHHHHHH--HHHHHHHHhCC--
Q 006122 47 QRLPVYKYRTAILYLVETHATTIIVGETGSGKT-TQIPQYLKEAGWADGGRVIACTQPRRLAVQA--VASRVAEEMGV-- 121 (660)
Q Consensus 47 ~~lPi~~~~~~i~~~l~~~~~vii~apTGsGKT-~~ip~~l~~~~~~~~~~~i~v~p~r~la~~~--~~~~~~~~~~~-- 121 (660)
..++. +.|.+++..+.++++++++|||||||| +++|.+... ...+.++++++|+|+|+.|. ..+.+....+.
T Consensus 54 ~g~~p-~iQ~~ai~~il~g~dvlv~apTGSGKTl~~lp~l~~~--~~~~~~~lil~PtreLa~Q~~~~l~~l~~~~~i~~ 130 (1054)
T 1gku_B 54 VGEPR-AIQKMWAKRILRKESFAATAPTGVGKTSFGLAMSLFL--ALKGKRCYVIFPTSLLVIQAAETIRKYAEKAGVGT 130 (1054)
T ss_dssp TCSCC-HHHHHHHHHHHTTCCEECCCCBTSCSHHHHHHHHHHH--HTTSCCEEEEESCHHHHHHHHHHHHHHHTTTCCSG
T ss_pred cCCCH-HHHHHHHHHHHhCCCEEEEcCCCCCHHHHHHHHHHHH--hhcCCeEEEEeccHHHHHHHHHHHHHHHhhcCCCc
Confidence 33444 999999999999999999999999999 555544433 23566789999999998873 33344445566
Q ss_pred --eeeeEEeeeeeccc----cCCCCCceEEEechHHHHHHHhcCCCCCCCcEEEEeCCCcCCcChhHHHHHHHHHHH---
Q 006122 122 --KVGEEVGYTIRFED----FTNKDLTAIKFLTDGVLLREMMDDPLLTKYSVIMVDEAHERSISTDILLGLLKKIQR--- 192 (660)
Q Consensus 122 --~~~~~vg~~~~~~~----~~~~~~~~I~v~T~~~ll~~l~~~~~l~~~~~iIiDE~Her~~~~d~ll~~l~~~~~--- 192 (660)
.++..+|.....+. .... +++|+|+||++|++.+.. +.++++|||||||+..-....+..+++.+..
T Consensus 131 ~~~v~~~~Gg~~~~~~~~~~~~l~-~~~IlV~TP~~L~~~l~~---L~~l~~lViDEah~~l~~~~~~~~i~~~lgf~~~ 206 (1054)
T 1gku_B 131 ENLIGYYHGRIPKREKENFMQNLR-NFKIVITTTQFLSKHYRE---LGHFDFIFVDDVDAILKASKNVDKLLHLLGFHYD 206 (1054)
T ss_dssp GGSEEECCSSCCSHHHHHHHHSGG-GCSEEEEEHHHHHHCSTT---SCCCSEEEESCHHHHHTSTHHHHHHHHHTTEEEE
T ss_pred cceEEEEeCCCChhhHHHHHhhcc-CCCEEEEcHHHHHHHHHH---hccCCEEEEeChhhhhhccccHHHHHHHhCcchh
Confidence 66666664332221 1112 389999999999987655 7799999999999422222223333333210
Q ss_pred -----hcCCceEEEeecccchH-HHH-HHhhcCCCCCCCcccccCCCCCCeEEEECCccccceEEecCCCchhHHHHHHH
Q 006122 193 -----CRSDLRLIISSATIEAK-SMS-AFFHARKGRRGLEGVELVPRLEPAILSVEGRGFNVQIHYVEEPVSDYVQAAVS 265 (660)
Q Consensus 193 -----~~~~~kii~~SAT~~~~-~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~ 265 (660)
.....+++++|||+... .+. .++.... ..... .... ...++...+......+.+
T Consensus 207 ~~~~~~~~~~q~~l~SAT~t~~~~~~~~~~~~~~-~i~v~---------~~~~----~~~~i~~~~~~~~k~~~L----- 267 (1054)
T 1gku_B 207 LKTKSWVGEARGCLMVSTATAKKGKKAELFRQLL-NFDIG---------SSRI----TVRNVEDVAVNDESISTL----- 267 (1054)
T ss_dssp TTTTEEEECCSSEEEECCCCSCCCTTHHHHHHHH-CCCCS---------CCEE----CCCCEEEEEESCCCTTTT-----
T ss_pred hhhhhcccCCceEEEEecCCCchhHHHHHhhcce-EEEcc---------Cccc----CcCCceEEEechhHHHHH-----
Confidence 12457899999998432 222 2222211 00000 0000 011233444433222222
Q ss_pred HHHHHHhcCCCCcEEEEcCCHHHHHHHHHHHHHHhhhccCCCCCeEEEEccCCCCHHHHhhhcCCCCCCCcEEEEe----
Q 006122 266 TVLLIHDKEPPGDILVFLTGQDDIDATIQLLTEEARTSKKNSSGLIILPLYSGLSRAEQEQVFSPTPRGKRKVVIS---- 341 (660)
Q Consensus 266 ~~~~~~~~~~~~~iLVF~~~~~~i~~l~~~L~~~~~~~~~~~~~~~v~~lh~~l~~~~r~~v~~~f~~g~~~vlva---- 341 (660)
..+... .++++||||+++++++.+++.|.+. +.+..+||++. .+++.|++|+.+||||
T Consensus 268 --~~ll~~-~~~~~LVF~~t~~~a~~l~~~L~~~----------~~v~~lhg~~~-----~~l~~F~~G~~~VLVaTas~ 329 (1054)
T 1gku_B 268 --SSILEK-LGTGGIIYARTGEEAEEIYESLKNK----------FRIGIVTATKK-----GDYEKFVEGEIDHLIGTAHY 329 (1054)
T ss_dssp --HHHHTT-SCSCEEEEESSHHHHHHHHHTTTTS----------SCEEECTTSSS-----HHHHHHHHTSCSEEEEECC-
T ss_pred --HHHHhh-cCCCEEEEEcCHHHHHHHHHHHhhc----------cCeeEEeccHH-----HHHHHHHcCCCcEEEEecCC
Confidence 122222 2578999999999999999887531 67999999983 5677899999999999
Q ss_pred CCCcccccCCCCe-EEEEeCCCc
Q 006122 342 TNIAETSLTLEGI-VYVVDSGFS 363 (660)
Q Consensus 342 T~i~e~Gidip~v-~~VId~g~~ 363 (660)
|+++++|||+|+| ++||++|..
T Consensus 330 Tdv~~rGIDip~VI~~VI~~~~P 352 (1054)
T 1gku_B 330 YGTLVRGLDLPERIRFAVFVGCP 352 (1054)
T ss_dssp -----CCSCCTTTCCEEEEESCC
T ss_pred CCeeEeccccCCcccEEEEeCCC
Confidence 9999999999995 999999987
No 48
>2fwr_A DNA repair protein RAD25; DNA unwinding, XPB, DNA binding protein; HET: DNA; 2.60A {Archaeoglobus fulgidus} SCOP: c.37.1.19 c.37.1.19 PDB: 2fzl_A*
Probab=99.96 E-value=2.4e-30 Score=283.96 Aligned_cols=312 Identities=17% Similarity=0.133 Sum_probs=203.5
Q ss_pred CCCcHHHHHHHHHHHhcCCEEEEEcCCCCcHHHHHHHHHHhccccCCCeEEEEeCchHHHHHHHHHHHHHHhCCe-eeeE
Q 006122 48 RLPVYKYRTAILYLVETHATTIIVGETGSGKTTQIPQYLKEAGWADGGRVIACTQPRRLAVQAVASRVAEEMGVK-VGEE 126 (660)
Q Consensus 48 ~lPi~~~~~~i~~~l~~~~~vii~apTGsGKT~~ip~~l~~~~~~~~~~~i~v~p~r~la~~~~~~~~~~~~~~~-~~~~ 126 (660)
.+.++++|.++++++.+++.+++++|||+|||.+....+... +.++++++|++.|+.| +.+++.+ ++.. ++..
T Consensus 91 ~~~l~~~Q~~ai~~i~~~~~~ll~~~TGsGKT~~~l~~i~~~----~~~~Lvl~P~~~L~~Q-~~~~~~~-~~~~~v~~~ 164 (472)
T 2fwr_A 91 EISLRDYQEKALERWLVDKRGCIVLPTGSGKTHVAMAAINEL----STPTLIVVPTLALAEQ-WKERLGI-FGEEYVGEF 164 (472)
T ss_dssp CCCBCHHHHHHHHHHTTTTEEEEECCTTSCHHHHHHHHHHHH----CSCEEEEESSHHHHHH-HHHHGGG-GCGGGEEEB
T ss_pred CCCcCHHHHHHHHHHHhcCCEEEEeCCCCCHHHHHHHHHHHc----CCCEEEEECCHHHHHH-HHHHHHh-CCCcceEEE
Confidence 457899999999999998899999999999996655555443 4568999999888765 4555555 6666 5554
Q ss_pred EeeeeeccccCCCCCceEEEechHHHHHHHhcCCCCCCCcEEEEeCCCcCCcChhHHHHHHHHHHHhcCCceEEEeeccc
Q 006122 127 VGYTIRFEDFTNKDLTAIKFLTDGVLLREMMDDPLLTKYSVIMVDEAHERSISTDILLGLLKKIQRCRSDLRLIISSATI 206 (660)
Q Consensus 127 vg~~~~~~~~~~~~~~~I~v~T~~~ll~~l~~~~~l~~~~~iIiDE~Her~~~~d~ll~~l~~~~~~~~~~kii~~SAT~ 206 (660)
.|.. .. ..+|+|+|++.+...+.. ...++++|||||+|. ..+..+ +.+....+..+++++|||+
T Consensus 165 ~g~~-------~~-~~~Ivv~T~~~l~~~~~~--~~~~~~liIvDEaH~-~~~~~~-----~~~~~~~~~~~~l~lSATp 228 (472)
T 2fwr_A 165 SGRI-------KE-LKPLTVSTYDSAYVNAEK--LGNRFMLLIFDEVHH-LPAESY-----VQIAQMSIAPFRLGLTATF 228 (472)
T ss_dssp SSSC-------BC-CCSEEEEEHHHHHHTHHH--HTTTCSEEEEETGGG-TTSTTT-----HHHHHTCCCSEEEEEESCC
T ss_pred CCCc-------CC-cCCEEEEEcHHHHHHHHH--hcCCCCEEEEECCcC-CCChHH-----HHHHHhcCCCeEEEEecCc
Confidence 4421 12 578999999998876532 134699999999994 333332 2344455678899999999
Q ss_pred ch-----HHHHHHhhcCCCCCCCcccccCCCCCCe--EEEECCccccc-----------------------eEEec----
Q 006122 207 EA-----KSMSAFFHARKGRRGLEGVELVPRLEPA--ILSVEGRGFNV-----------------------QIHYV---- 252 (660)
Q Consensus 207 ~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~v-----------------------~~~~~---- 252 (660)
.. ..+..+++..................+. .+.++...... ...+.
T Consensus 229 ~~~~~~~~~l~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~ 308 (472)
T 2fwr_A 229 EREDGRHEILKEVVGGKVFELFPDSLAGKHLAKYTIKRIFVPLAEDERVEYEKREKVYKQFLRARGITLRRAEDFNKIVM 308 (472)
T ss_dssp CCTTSGGGSHHHHTCCEEEECCHHHHTSCCCCSEEECCEEECCCHHHHHHTTTTTHHHHSCSSSCCCTTTCCSSSTTTTT
T ss_pred cCCCCHHHHHHHHhCCeEeecCHHHHhcCcCCCeEEEEEEcCCCHHHHHHHHHHHHHHHHHHHhcCccccchhhHHHHHH
Confidence 41 1244444321111000000000000000 01111000000 00000
Q ss_pred ----CCC-chhH------------HHHHHHHHHHHHhcCCCCcEEEEcCCHHHHHHHHHHHHHHhhhccCCCCCeEEEEc
Q 006122 253 ----EEP-VSDY------------VQAAVSTVLLIHDKEPPGDILVFLTGQDDIDATIQLLTEEARTSKKNSSGLIILPL 315 (660)
Q Consensus 253 ----~~~-~~~~------------~~~~~~~~~~~~~~~~~~~iLVF~~~~~~i~~l~~~L~~~~~~~~~~~~~~~v~~l 315 (660)
... .... .......+..+.....++++||||++++.++.+++.|. +..+
T Consensus 309 ~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~l~~~l~~~~~~k~lvF~~~~~~~~~l~~~l~--------------~~~~ 374 (472)
T 2fwr_A 309 ASGYDERAYEALRAWEEARRIAFNSKNKIRKLREILERHRKDKIIIFTRHNELVYRISKVFL--------------IPAI 374 (472)
T ss_dssp TTCCSSSSSTTTHHHHHHHHHHHSCSHHHHHHHHHHHHTSSSCBCCBCSCHHHHHHHHHHTT--------------CCBC
T ss_pred HhccCHHHHHHHHHHHHHHHHhhcChHHHHHHHHHHHhCCCCcEEEEECCHHHHHHHHHHhC--------------ccee
Confidence 000 0000 00112333344444567889999999999999888762 4569
Q ss_pred cCCCCHHHHhhhcCCCCCCCcEEEEeCCCcccccCCCCeEEEEeCCCccceeecCCCCcccceeeecCHHhHHHhhcccC
Q 006122 316 YSGLSRAEQEQVFSPTPRGKRKVVISTNIAETSLTLEGIVYVVDSGFSKQRFYNPISDIENLVVAPISKASARQRAGRAG 395 (660)
Q Consensus 316 h~~l~~~~r~~v~~~f~~g~~~vlvaT~i~e~Gidip~v~~VId~g~~k~~~~~~~~~~~~l~~~~~s~~~~~QR~GRaG 395 (660)
||+++..+|.++++.|++|..+|||||+++++|+|+|++++||+++. |.|..++.||+||||
T Consensus 375 ~g~~~~~~R~~~~~~F~~g~~~vLv~T~~~~~Gldlp~~~~Vi~~~~------------------~~s~~~~~Q~~GR~~ 436 (472)
T 2fwr_A 375 THRTSREEREEILEGFRTGRFRAIVSSQVLDEGIDVPDANVGVIMSG------------------SGSAREYIQRLGRIL 436 (472)
T ss_dssp CSSSCSHHHHTHHHHHHHSSCSBCBCSSCCCSSSCSCCBSEEEEECC------------------SSCCHHHHHHHHHSB
T ss_pred eCCCCHHHHHHHHHHHhCCCCCEEEEcCchhcCcccccCcEEEEECC------------------CCCHHHHHHHHhhcc
Confidence 99999999999999999999999999999999999999999998554 667889999999999
Q ss_pred CCCCc----EEEEccChHHhhh
Q 006122 396 RVRPG----KCYRLYTEEYFVK 413 (660)
Q Consensus 396 R~~~G----~~~~l~~~~~~~~ 413 (660)
|.++| .+|.++++...+.
T Consensus 437 R~g~~k~~~~i~~lv~~~t~ee 458 (472)
T 2fwr_A 437 RPSKGKKEAVLYELISRGTGEV 458 (472)
T ss_dssp CCCTTTCCEEEEEEEECSCC--
T ss_pred CCCCCCceEEEEEEEeCCCchH
Confidence 99666 5677777655443
No 49
>1tf5_A Preprotein translocase SECA subunit; ATPase, helicase, translocation, secretion, protein transport; 2.18A {Bacillus subtilis} SCOP: a.162.1.1 a.172.1.1 c.37.1.19 c.37.1.19 PDB: 1tf2_A 3iqy_A 1m6n_A 1m74_A* 3iqm_A 3jv2_A* 2ibm_A* 3dl8_A 1sx0_A 1sx1_A 1tm6_A
Probab=99.96 E-value=1.3e-28 Score=275.15 Aligned_cols=320 Identities=18% Similarity=0.188 Sum_probs=207.1
Q ss_pred cHHHHHHHHHHHhcCCEEEEEcCCCCcHH--HHHHHHHHhccccCCCeEEEEeCchHHHHH--HHHHHHHHHhCCeeeeE
Q 006122 51 VYKYRTAILYLVETHATTIIVGETGSGKT--TQIPQYLKEAGWADGGRVIACTQPRRLAVQ--AVASRVAEEMGVKVGEE 126 (660)
Q Consensus 51 i~~~~~~i~~~l~~~~~vii~apTGsGKT--~~ip~~l~~~~~~~~~~~i~v~p~r~la~~--~~~~~~~~~~~~~~~~~ 126 (660)
.+..|...+..+.+|+ |..++||+||| +.+|.++... .+..+++++|+|.||.| .+...+.+.+|.+++..
T Consensus 84 pt~VQ~~~ip~ll~G~--Iaea~TGeGKTlaf~LP~~l~aL---~g~~vlVltptreLA~qd~e~~~~l~~~lgl~v~~i 158 (844)
T 1tf5_A 84 PFKVQLMGGVALHDGN--IAEMKTGEGKTLTSTLPVYLNAL---TGKGVHVVTVNEYLASRDAEQMGKIFEFLGLTVGLN 158 (844)
T ss_dssp CCHHHHHHHHHHHTTS--EEECCTTSCHHHHHHHHHHHHHT---TSSCEEEEESSHHHHHHHHHHHHHHHHHTTCCEEEC
T ss_pred CcHHHHHhhHHHhCCC--EEEccCCcHHHHHHHHHHHHHHH---cCCCEEEEeCCHHHHHHHHHHHHHHHhhcCCeEEEE
Confidence 3445555555666677 99999999999 7778765432 35578999999999988 56677888899999888
Q ss_pred EeeeeeccccCCCCCceEEEechHHH-HHHHhcC-------CCCCCCcEEEEeCCCcCCcCh---------------hHH
Q 006122 127 VGYTIRFEDFTNKDLTAIKFLTDGVL-LREMMDD-------PLLTKYSVIMVDEAHERSIST---------------DIL 183 (660)
Q Consensus 127 vg~~~~~~~~~~~~~~~I~v~T~~~l-l~~l~~~-------~~l~~~~~iIiDE~Her~~~~---------------d~l 183 (660)
+|........... .++|+|+||+.| ++.+... ..++.+.++||||||...++. ++.
T Consensus 159 ~gg~~~~~r~~~~-~~dIv~gTpgrlgfD~L~D~m~~~~~~l~lr~~~~lVlDEaD~mLiDea~tplIisg~~~~~~~~~ 237 (844)
T 1tf5_A 159 LNSMSKDEKREAY-AADITYSTNNELGFDYLRDNMVLYKEQMVQRPLHFAVIDEVDSILIDEARTPLIISGQAAKSTKLY 237 (844)
T ss_dssp CTTSCHHHHHHHH-HSSEEEEEHHHHHHHHHHHTTCSSGGGCCCCCCCEEEEETHHHHHTTTTTCEEEEEEEEECCCHHH
T ss_pred eCCCCHHHHHHhc-CCCEEEECchhhhHHHHHHhhhcchhhhcccCCCEEEECchhhhhhhccccchhhcCCcccchhHH
Confidence 7753222222222 589999999999 5544322 237899999999999422232 233
Q ss_pred HHHHHHHHHhc---------CCceEE-----------------Eeecccch--HHHH-----H-HhhcCCC---------
Q 006122 184 LGLLKKIQRCR---------SDLRLI-----------------ISSATIEA--KSMS-----A-FFHARKG--------- 220 (660)
Q Consensus 184 l~~l~~~~~~~---------~~~kii-----------------~~SAT~~~--~~~~-----~-~~~~~~~--------- 220 (660)
..+-+.+.... ++.++. ++|||... ..+. . +|.....
T Consensus 238 ~~i~~iv~~l~~~~~y~vd~k~rq~~lt~~g~~~~e~~~~i~~Lfsat~~~~~~~i~~al~A~~l~~~d~dYiv~dg~v~ 317 (844)
T 1tf5_A 238 VQANAFVRTLKAEKDYTYDIKTKAVQLTEEGMTKAEKAFGIDNLFDVKHVALNHHINQALKAHVAMQKDVDYVVEDGQVV 317 (844)
T ss_dssp HHHHHHHTTCCSSSSBCCCSSSCCCCBCHHHHHHHHHHTTCSCTTSGGGHHHHHHHHHHHHHHHTCCBTTTEEEETTEEE
T ss_pred HHHHHHHHhCcccccceeccccceEEecHHHHHHHHHHhCccccCCCccchhHHHHHHHHHHHHHhhcCCceEEecCeeE
Confidence 33333332332 245565 88999631 2222 1 1111100
Q ss_pred -----------CCCCcc----c---ccCCCCCC----------------------------------------eEEEECC
Q 006122 221 -----------RRGLEG----V---ELVPRLEP----------------------------------------AILSVEG 242 (660)
Q Consensus 221 -----------~~~~~~----~---~~~~~~~~----------------------------------------~~~~~~~ 242 (660)
...|.. . .....+.+ .++.++.
T Consensus 318 ivDe~tgr~m~grr~sdGLhqaieake~v~I~~e~~t~a~It~q~~fr~y~kl~GmTGTa~te~~e~~~iY~l~vv~IPt 397 (844)
T 1tf5_A 318 IVDSFTGRLMKGRRYSEGLHQAIEAKEGLEIQNESMTLATITFQNYFRMYEKLAGMTGTAKTEEEEFRNIYNMQVVTIPT 397 (844)
T ss_dssp EBCTTTCCBCTTCCCSTTHHHHHHHHTTCCCCCCEEEEEEEEHHHHHTTSSEEEEEESCCGGGHHHHHHHHCCCEEECCC
T ss_pred EeecccccccCCCccchhhHHHHhhcccceecccccccceeeHHHHHHHHhhhccCCcccchhHHHHHHHhCCceEEecC
Confidence 000000 0 00000000 0111111
Q ss_pred ccccce------EEecCCCchhHHHHHHHHHHHHHhcCCCCcEEEEcCCHHHHHHHHHHHHHHhhhccCCCCCeEEEEcc
Q 006122 243 RGFNVQ------IHYVEEPVSDYVQAAVSTVLLIHDKEPPGDILVFLTGQDDIDATIQLLTEEARTSKKNSSGLIILPLY 316 (660)
Q Consensus 243 ~~~~v~------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iLVF~~~~~~i~~l~~~L~~~~~~~~~~~~~~~v~~lh 316 (660)
. .|+. ..|. ...+.....+..+...+. .+.++||||+|++.++.++..|.+. ++.+..+|
T Consensus 398 n-~p~~r~d~~d~v~~--~~~~K~~al~~~i~~~~~--~~~pvLVft~s~~~se~Ls~~L~~~---------gi~~~vLh 463 (844)
T 1tf5_A 398 N-RPVVRDDRPDLIYR--TMEGKFKAVAEDVAQRYM--TGQPVLVGTVAVETSELISKLLKNK---------GIPHQVLN 463 (844)
T ss_dssp S-SCCCCEECCCEEES--SHHHHHHHHHHHHHHHHH--HTCCEEEEESCHHHHHHHHHHHHTT---------TCCCEEEC
T ss_pred C-CCcccccCCcEEEe--CHHHHHHHHHHHHHHHHh--cCCcEEEEECCHHHHHHHHHHHHHC---------CCCEEEee
Confidence 0 1110 1111 122223333333333332 3557999999999999999999875 78889999
Q ss_pred CCCCHHHHhhhcCCCCCCCcEEEEeCCCcccccCCC--------CeEEEEeCCCccceeecCCCCcccceeeecCHHhHH
Q 006122 317 SGLSRAEQEQVFSPTPRGKRKVVISTNIAETSLTLE--------GIVYVVDSGFSKQRFYNPISDIENLVVAPISKASAR 388 (660)
Q Consensus 317 ~~l~~~~r~~v~~~f~~g~~~vlvaT~i~e~Gidip--------~v~~VId~g~~k~~~~~~~~~~~~l~~~~~s~~~~~ 388 (660)
|++...++..+.+.++.| .|+||||+|++|+||+ ++.+||++++ |.|...|.
T Consensus 464 g~~~~rEr~ii~~ag~~g--~VlIATdmAgRG~DI~l~~~V~~~ggl~VIn~d~------------------p~s~r~y~ 523 (844)
T 1tf5_A 464 AKNHEREAQIIEEAGQKG--AVTIATNMAGRGTDIKLGEGVKELGGLAVVGTER------------------HESRRIDN 523 (844)
T ss_dssp SSCHHHHHHHHTTTTSTT--CEEEEETTSSTTCCCCCCTTSGGGTSEEEEESSC------------------CSSHHHHH
T ss_pred CCccHHHHHHHHHcCCCC--eEEEeCCccccCcCccccchhhhcCCcEEEEecC------------------CCCHHHHH
Confidence 999988888777777765 6999999999999999 8999999888 89999999
Q ss_pred HhhcccCCC-CCcEEEEccChHH
Q 006122 389 QRAGRAGRV-RPGKCYRLYTEEY 410 (660)
Q Consensus 389 QR~GRaGR~-~~G~~~~l~~~~~ 410 (660)
||+||+||. .+|.++.+++.++
T Consensus 524 hr~GRTGRqG~~G~s~~~vs~eD 546 (844)
T 1tf5_A 524 QLRGRSGRQGDPGITQFYLSMED 546 (844)
T ss_dssp HHHTTSSGGGCCEEEEEEEETTS
T ss_pred hhcCccccCCCCCeEEEEecHHH
Confidence 999999999 9999998887654
No 50
>2oca_A DAR protein, ATP-dependent DNA helicase UVSW; ATP-dependant helicase, T4-bacteriophage, recombination, hydrolase; 2.70A {Enterobacteria phage T4}
Probab=99.96 E-value=1.3e-29 Score=280.91 Aligned_cols=313 Identities=11% Similarity=0.077 Sum_probs=192.8
Q ss_pred CCcHHHHHHHHHHHhcCCEEEEEcCCCCcHHHHHHHHHHhccccCCCeEEEEeCchHHHHHHHHHHHHHHhC---Ceeee
Q 006122 49 LPVYKYRTAILYLVETHATTIIVGETGSGKTTQIPQYLKEAGWADGGRVIACTQPRRLAVQAVASRVAEEMG---VKVGE 125 (660)
Q Consensus 49 lPi~~~~~~i~~~l~~~~~vii~apTGsGKT~~ip~~l~~~~~~~~~~~i~v~p~r~la~~~~~~~~~~~~~---~~~~~ 125 (660)
...+.+|.++++.+.+++++++++|||+|||.+....+.......++++++++|++.|+.|.. +++.+... ..++.
T Consensus 112 ~~l~~~Q~~ai~~~~~~~~~ll~~~tGsGKT~~~~~~~~~~~~~~~~~vlvl~P~~~L~~Q~~-~~~~~~~~~~~~~v~~ 190 (510)
T 2oca_A 112 IEPHWYQKDAVFEGLVNRRRILNLPTSAGRSLIQALLARYYLENYEGKILIIVPTTALTTQMA-DDFVDYRLFSHAMIKK 190 (510)
T ss_dssp ECCCHHHHHHHHHHHHHSEEEEECCSTTTHHHHHHHHHHHHHHHCSSEEEEEESSHHHHHHHH-HHHHHTTSSCGGGEEE
T ss_pred CCCCHHHHHHHHHHHhcCCcEEEeCCCCCHHHHHHHHHHHHHhCCCCeEEEEECcHHHHHHHH-HHHHHhhcCCccceEE
Confidence 367888999999888888999999999999966544444322223458899999998887644 44443321 23333
Q ss_pred EEeeeeeccccCCCCCceEEEechHHHHHHHhcCCCCCCCcEEEEeCCCcCCcChhHHHHHHHHHH-HhcCCceEEEeec
Q 006122 126 EVGYTIRFEDFTNKDLTAIKFLTDGVLLREMMDDPLLTKYSVIMVDEAHERSISTDILLGLLKKIQ-RCRSDLRLIISSA 204 (660)
Q Consensus 126 ~vg~~~~~~~~~~~~~~~I~v~T~~~ll~~l~~~~~l~~~~~iIiDE~Her~~~~d~ll~~l~~~~-~~~~~~kii~~SA 204 (660)
..|.....+. ... ..+|+|+|++.+.+. ....+.++++|||||+|. ... . .+..+. ...+..++++|||
T Consensus 191 ~~~~~~~~~~-~~~-~~~I~i~T~~~l~~~--~~~~~~~~~liIiDE~H~-~~~-~----~~~~il~~~~~~~~~l~lSA 260 (510)
T 2oca_A 191 IGGGASKDDK-YKN-DAPVVVGTWQTVVKQ--PKEWFSQFGMMMNDECHL-ATG-K----SISSIISGLNNCMFKFGLSG 260 (510)
T ss_dssp CGGGCCTTGG-GCT-TCSEEEEEHHHHTTS--CGGGGGGEEEEEEETGGG-CCH-H----HHHHHGGGCTTCCEEEEEES
T ss_pred EecCCccccc-ccc-CCcEEEEeHHHHhhc--hhhhhhcCCEEEEECCcC-CCc-c----cHHHHHHhcccCcEEEEEEe
Confidence 3332211111 113 689999999976543 113377899999999994 322 1 123332 3346778999999
Q ss_pred ccchH-----HHHHHhhcCCCCCCCcccccCCCCCCeEEEECCccccceEEecC--------CCchh----------HHH
Q 006122 205 TIEAK-----SMSAFFHARKGRRGLEGVELVPRLEPAILSVEGRGFNVQIHYVE--------EPVSD----------YVQ 261 (660)
Q Consensus 205 T~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~--------~~~~~----------~~~ 261 (660)
|+... .+..+++..................+ -...++...... ..... ...
T Consensus 261 Tp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 334 (510)
T 2oca_A 261 SLRDGKANIMQYVGMFGEIFKPVTTSKLMEDGQVTE------LKINSIFLRYPDEFTTKLKGKTYQEEIKIITGLSKRNK 334 (510)
T ss_dssp CGGGCSSCHHHHHHHHCSEECCCCCC---------C------CEEEEEEEECCHHHHHHHTTCCHHHHHHHHHTCHHHHH
T ss_pred CCCCCcccHHHhHHhhCCeEEeeCHHHHhhCCcCCC------ceEEEEeecCChHHhccccccchHHHHHHHhccHHHHH
Confidence 99322 13334433211110000000000000 000000000000 00000 011
Q ss_pred HHHHHHHHHHhcCCCCcEEEEcCCHHHHHHHHHHHHHHhhhccCCCCCeEEEEccCCCCHHHHhhhcCCCCCCCcEEEEe
Q 006122 262 AAVSTVLLIHDKEPPGDILVFLTGQDDIDATIQLLTEEARTSKKNSSGLIILPLYSGLSRAEQEQVFSPTPRGKRKVVIS 341 (660)
Q Consensus 262 ~~~~~~~~~~~~~~~~~iLVF~~~~~~i~~l~~~L~~~~~~~~~~~~~~~v~~lh~~l~~~~r~~v~~~f~~g~~~vlva 341 (660)
.....+.... ...++.++||++ .++++.+++.|.+. +..+..+||+++.++|.++++.|.+|+.+||||
T Consensus 335 ~l~~~l~~~~-~~~~~~~ivf~~-~~~~~~l~~~L~~~---------~~~v~~~~g~~~~~~r~~i~~~f~~g~~~vLv~ 403 (510)
T 2oca_A 335 WIAKLAIKLA-QKDENAFVMFKH-VSHGKAIFDLIKNE---------YDKVYYVSGEVDTETRNIMKTLAENGKGIIIVA 403 (510)
T ss_dssp HHHHHHHHHH-TTTCEEEEEESS-HHHHHHHHHHHHTT---------CSSEEEESSSTTHHHHHHHHHHHHHCCSCEEEE
T ss_pred HHHHHHHHHH-hcCCCeEEEEec-HHHHHHHHHHHHHc---------CCCeEEEECCCCHHHHHHHHHHHhCCCCCEEEE
Confidence 1122222222 224455677776 88888888888654 347899999999999999999999999999999
Q ss_pred C-CCcccccCCCCeEEEEeCCCccceeecCCCCcccceeeecCHHhHHHhhcccCCCCCcE-EEEccC
Q 006122 342 T-NIAETSLTLEGIVYVVDSGFSKQRFYNPISDIENLVVAPISKASARQRAGRAGRVRPGK-CYRLYT 407 (660)
Q Consensus 342 T-~i~e~Gidip~v~~VId~g~~k~~~~~~~~~~~~l~~~~~s~~~~~QR~GRaGR~~~G~-~~~l~~ 407 (660)
| +++++|+|+|++++||..+. |.|.+++.||+||+||.++|. ++.+|+
T Consensus 404 T~~~~~~GiDip~v~~vi~~~~------------------~~s~~~~~Q~~GR~gR~g~~~~~v~i~~ 453 (510)
T 2oca_A 404 SYGVFSTGISVKNLHHVVLAHG------------------VKSKIIVLQTIGRVLRKHGSKTIATVWD 453 (510)
T ss_dssp EHHHHHHSCCCCSEEEEEESSC------------------CCSCCHHHHHHHHHHTTTCCCCCCEEEE
T ss_pred EcChhhcccccccCcEEEEeCC------------------CCCHHHHHHHHhcccccCCCCceEEEEE
Confidence 9 99999999999999998665 567788999999999995443 555554
No 51
>2fsf_A Preprotein translocase SECA subunit; ATPase, DNA-RNA helicase, protein translocation, protein transport; 2.00A {Escherichia coli} PDB: 2fsg_A* 2fsh_A* 2fsi_A* 2vda_A 3bxz_A*
Probab=99.95 E-value=1.5e-27 Score=265.66 Aligned_cols=321 Identities=18% Similarity=0.170 Sum_probs=192.1
Q ss_pred CCcHHHHHHHHHHHhcCCEEEEEcCCCCcHH--HHHHHHHHhccccCCCeEEEEeCchHHHHH--HHHHHHHHHhCCeee
Q 006122 49 LPVYKYRTAILYLVETHATTIIVGETGSGKT--TQIPQYLKEAGWADGGRVIACTQPRRLAVQ--AVASRVAEEMGVKVG 124 (660)
Q Consensus 49 lPi~~~~~~i~~~l~~~~~vii~apTGsGKT--~~ip~~l~~~~~~~~~~~i~v~p~r~la~~--~~~~~~~~~~~~~~~ 124 (660)
-|.. .|......+.+++ |..++|||||| +.+|.+.... .+.++++++|+|.||.| .+...+.+.+|.+++
T Consensus 74 ~p~~-VQ~~~i~~ll~G~--Iaem~TGsGKTlaf~LP~l~~~l---~g~~vlVltPTreLA~Q~~e~~~~l~~~lgl~v~ 147 (853)
T 2fsf_A 74 RHFD-VQLLGGMVLNERC--IAEMRTGEGKTLTATLPAYLNAL---TGKGVHVVTVNDYLAQRDAENNRPLFEFLGLTVG 147 (853)
T ss_dssp CCCH-HHHHHHHHHHSSE--EEECCTTSCHHHHHHHHHHHHHT---TSSCCEEEESSHHHHHHHHHHHHHHHHHTTCCEE
T ss_pred CCCh-HHHhhcccccCCe--eeeecCCchHHHHHHHHHHHHHH---cCCcEEEEcCCHHHHHHHHHHHHHHHHhcCCeEE
Confidence 3544 4444444556666 99999999999 6677664332 34568999999999988 566778888999998
Q ss_pred eEEeeeeeccccCCCCCceEEEechHHH-HHHHhcC-------CCCCCCcEEEEeCCCcCCcCh---------------h
Q 006122 125 EEVGYTIRFEDFTNKDLTAIKFLTDGVL-LREMMDD-------PLLTKYSVIMVDEAHERSIST---------------D 181 (660)
Q Consensus 125 ~~vg~~~~~~~~~~~~~~~I~v~T~~~l-l~~l~~~-------~~l~~~~~iIiDE~Her~~~~---------------d 181 (660)
..+|........... .++|+|+||+.| ++.+..+ ..++++.++||||||....+. +
T Consensus 148 ~i~GG~~~~~r~~~~-~~dIvvgTpgrl~fDyLrd~~~~~~~~~~~~~l~~lVlDEaD~mLiD~a~tpLIiSg~~~~~~~ 226 (853)
T 2fsf_A 148 INLPGMPAPAKREAY-AADITYGTNNEYGFDYLRDNMAFSPEERVQRKLHYALVDEVDSILIDEARTPLIISGPAEDSSE 226 (853)
T ss_dssp ECCTTCCHHHHHHHH-HSSEEEEEHHHHHHHHHHHTTCSSGGGCCCCSCCEEEESCHHHHTTTTTTCEEEEEEC------
T ss_pred EEeCCCCHHHHHHhc-CCCEEEECCchhhHHHHHhhhhccHhHhcccCCcEEEECchHHHHHhcCcccccccCCCccchh
Confidence 888753322222222 589999999999 6666543 237899999999999322221 1
Q ss_pred HHH---HHHHHHHHh-----------------cCCceEE------------------------Eeecccch--HHHH---
Q 006122 182 ILL---GLLKKIQRC-----------------RSDLRLI------------------------ISSATIEA--KSMS--- 212 (660)
Q Consensus 182 ~ll---~~l~~~~~~-----------------~~~~kii------------------------~~SAT~~~--~~~~--- 212 (660)
+.. .+++.+... .++.++. ++|||... ..+.
T Consensus 227 ~y~~i~~iv~~L~~~~~~~~~~~~~~~dy~vdek~rqv~lte~g~~~~e~~l~~~~l~~~~~~Lfsat~~~~~~~i~~al 306 (853)
T 2fsf_A 227 MYKRVNKIIPHLIRQEKEDSETFQGEGHFSVDEKSRQVNLTERGLVLIEELLVKEGIMDEGESLYSPANIMLMHHVTAAL 306 (853)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HHHHHHHHHHhchhhhccccccccccccceeccccceEEEcHHHHHHHHHHHHhCCcccccccccCcccchHHHHHHHHH
Confidence 211 222222110 0122222 78888521 1111
Q ss_pred ---HHhhcCC--------------------CCCCCc-----------ccccCC-CCC-----------------------
Q 006122 213 ---AFFHARK--------------------GRRGLE-----------GVELVP-RLE----------------------- 234 (660)
Q Consensus 213 ---~~~~~~~--------------------~~~~~~-----------~~~~~~-~~~----------------------- 234 (660)
.+|.... ....|. .....+ ...
T Consensus 307 ~A~~l~~~d~dYiV~d~~vviVde~tgR~m~grr~sdGLhQaieake~v~I~~e~~tla~It~qnyfr~Y~kl~GmTGTa 386 (853)
T 2fsf_A 307 RAHALFTRDVDYIVKDGEVIIVDEHTGRTMQGRRWSDGLHQAVEAKEGVQIQNENQTLASITFQNYFRLYEKLAGMTGTA 386 (853)
T ss_dssp --------------------------------------------------CCCCCEEEEEEEHHHHHTTSSEEEEEECTT
T ss_pred HHHHHhhcCccceeecCcEEEEecccCcccCCCccchhhhHHHHhcccceecccccccceeehHHHHhhhhhhhcCCCCc
Confidence 0111000 000000 000000 000
Q ss_pred ------------CeEEEECCccccce------EEecCCCchhHHHHHHHHHHHHHhcCCCCcEEEEcCCHHHHHHHHHHH
Q 006122 235 ------------PAILSVEGRGFNVQ------IHYVEEPVSDYVQAAVSTVLLIHDKEPPGDILVFLTGQDDIDATIQLL 296 (660)
Q Consensus 235 ------------~~~~~~~~~~~~v~------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iLVF~~~~~~i~~l~~~L 296 (660)
..++.+|. ..|+. ..|. ...+.....+..+...+ ..+.++||||+|++.++.+++.|
T Consensus 387 ~te~~ef~~iY~l~vv~IPt-n~p~~R~d~~d~v~~--~~~~K~~al~~~i~~~~--~~gqpvLVft~sie~se~Ls~~L 461 (853)
T 2fsf_A 387 DTEAFEFSSIYKLDTVVVPT-NRPMIRKDLPDLVYM--TEAEKIQAIIEDIKERT--AKGQPVLVGTISIEKSELVSNEL 461 (853)
T ss_dssp CCCHHHHHHHHCCEEEECCC-SSCCCCEECCCEEES--SHHHHHHHHHHHHHHHH--TTTCCEEEEESSHHHHHHHHHHH
T ss_pred hhHHHHHHHHhCCcEEEcCC-CCCceeecCCcEEEe--CHHHHHHHHHHHHHHHh--cCCCCEEEEECcHHHHHHHHHHH
Confidence 01112221 11111 1111 11222222333332222 34567999999999999999999
Q ss_pred HHHhhhccCCCCCeEEEEccCCCCHHHHhhhcCCCCCCCcEEEEeCCCcccccCCCC-----------------------
Q 006122 297 TEEARTSKKNSSGLIILPLYSGLSRAEQEQVFSPTPRGKRKVVISTNIAETSLTLEG----------------------- 353 (660)
Q Consensus 297 ~~~~~~~~~~~~~~~v~~lh~~l~~~~r~~v~~~f~~g~~~vlvaT~i~e~Gidip~----------------------- 353 (660)
.+. ++....+||.....++..+.+.++.| .|+||||+|++|+||+.
T Consensus 462 ~~~---------gi~~~vLnak~~~rEa~iia~agr~G--~VtIATnmAgRGtDI~l~gn~~~~~~~~~~~~~~~~~~~~ 530 (853)
T 2fsf_A 462 TKA---------GIKHNVLNAKFHANEAAIVAQAGYPA--AVTIATNMAGRGTDIVLGGSWQAEVAALENPTAEQIEKIK 530 (853)
T ss_dssp HHT---------TCCCEECCTTCHHHHHHHHHTTTSTT--CEEEEESCCSSCSCCCTTCCHHHHHHHCSSCCSSHHHHHH
T ss_pred HHC---------CCCEEEecCChhHHHHHHHHhcCCCC--eEEEecccccCCcCccCCCchHhhhhhcccchhHHHHHHH
Confidence 886 78889999999888888888999988 69999999999999997
Q ss_pred ---------e-----EEEEeCCCccceeecCCCCcccceeeecCHHhHHHhhcccCCC-CCcEEEEccChHH
Q 006122 354 ---------I-----VYVVDSGFSKQRFYNPISDIENLVVAPISKASARQRAGRAGRV-RPGKCYRLYTEEY 410 (660)
Q Consensus 354 ---------v-----~~VId~g~~k~~~~~~~~~~~~l~~~~~s~~~~~QR~GRaGR~-~~G~~~~l~~~~~ 410 (660)
| .+||++++ |-|...|.||+||+||. .||.++.+++.++
T Consensus 531 ~~~~~~~~~V~~~GGl~VI~te~------------------pes~riy~qr~GRTGRqGd~G~s~~fls~eD 584 (853)
T 2fsf_A 531 ADWQVRHDAVLEAGGLHIIGTER------------------HESRRIDNQLRGRSGRQGDAGSSRFYLSMED 584 (853)
T ss_dssp HHHHHHHHHHHHTTSEEEEESSC------------------CSSHHHHHHHHTTSSGGGCCEEEEEEEETTS
T ss_pred HHhhhhhhHHHhcCCcEEEEccC------------------CCCHHHHHhhccccccCCCCeeEEEEecccH
Confidence 4 69999888 88999999999999999 9999888877543
No 52
>1nkt_A Preprotein translocase SECA 1 subunit; preprotein translocation, ATPase, transmembrane transport, helicase-like motor domain; HET: ADP; 2.60A {Mycobacterium tuberculosis} SCOP: a.162.1.1 a.172.1.1 c.37.1.19 c.37.1.19 PDB: 1nl3_A
Probab=99.95 E-value=1.3e-26 Score=258.33 Aligned_cols=323 Identities=17% Similarity=0.170 Sum_probs=209.3
Q ss_pred CCcHHHHHHHHHHHhcCCEEEEEcCCCCcHH--HHHHHHHHhccccCCCeEEEEeCchHHHHH--HHHHHHHHHhCCeee
Q 006122 49 LPVYKYRTAILYLVETHATTIIVGETGSGKT--TQIPQYLKEAGWADGGRVIACTQPRRLAVQ--AVASRVAEEMGVKVG 124 (660)
Q Consensus 49 lPi~~~~~~i~~~l~~~~~vii~apTGsGKT--~~ip~~l~~~~~~~~~~~i~v~p~r~la~~--~~~~~~~~~~~~~~~ 124 (660)
-|. ..|...+..+.+|+ |..++||+||| +.+|.++... .+.++++++|++.||.+ .+...+.+.+|++++
T Consensus 111 rP~-~VQ~~~ip~Ll~G~--Iaem~TGeGKTLa~~LP~~l~aL---~g~~v~VvTpTreLA~Qdae~m~~l~~~lGLsv~ 184 (922)
T 1nkt_A 111 RPF-DVQVMGAAALHLGN--VAEMKTGEGKTLTCVLPAYLNAL---AGNGVHIVTVNDYLAKRDSEWMGRVHRFLGLQVG 184 (922)
T ss_dssp CCC-HHHHHHHHHHHTTE--EEECCTTSCHHHHTHHHHHHHHT---TTSCEEEEESSHHHHHHHHHHHHHHHHHTTCCEE
T ss_pred CCC-HHHHHHHHhHhcCC--EEEecCCCccHHHHHHHHHHHHH---hCCCeEEEeCCHHHHHHHHHHHHHHHhhcCCeEE
Confidence 344 44444444556666 99999999999 6677665433 34568999999999988 567778889999998
Q ss_pred eEEeeeeeccccCCCCCceEEEechHHH-HHHHhcC-------CCCCCCcEEEEeCCCcCCcC---------------hh
Q 006122 125 EEVGYTIRFEDFTNKDLTAIKFLTDGVL-LREMMDD-------PLLTKYSVIMVDEAHERSIS---------------TD 181 (660)
Q Consensus 125 ~~vg~~~~~~~~~~~~~~~I~v~T~~~l-l~~l~~~-------~~l~~~~~iIiDE~Her~~~---------------~d 181 (660)
..+|........... .++|+|+||+.| ++.+..+ ..++.+.++||||||....+ ++
T Consensus 185 ~i~gg~~~~~r~~~y-~~DIvygTpgrlgfDyLrD~m~~~~~~l~lr~l~~lIVDEaDsmLiDeartPLiiSg~~~~~~~ 263 (922)
T 1nkt_A 185 VILATMTPDERRVAY-NADITYGTNNEFGFDYLRDNMAHSLDDLVQRGHHYAIVDEVDSILIDEARTPLIISGPADGASN 263 (922)
T ss_dssp ECCTTCCHHHHHHHH-HSSEEEEEHHHHHHHHHHHTTCSSGGGCCCCCCCEEEETTHHHHHTTGGGSCEEEEEECCCCHH
T ss_pred EEeCCCCHHHHHHhc-CCCEEEECchHhhHHHHHhhhhccHhhhccCCCCEEEEeChHHHHHhcCccceeecCCCCcchh
Confidence 887743322222222 579999999999 5665433 33789999999999932223 34
Q ss_pred HHHHHHHHHHHhc---------CCceEE-----------------Eeecccch--HHHHH------HhhcCCC-------
Q 006122 182 ILLGLLKKIQRCR---------SDLRLI-----------------ISSATIEA--KSMSA------FFHARKG------- 220 (660)
Q Consensus 182 ~ll~~l~~~~~~~---------~~~kii-----------------~~SAT~~~--~~~~~------~~~~~~~------- 220 (660)
+...+-+.+.... ++.++. ++|||... ..+.+ +|.....
T Consensus 264 ~y~~i~~iv~~L~~~~dy~vDek~rqv~Lte~G~~~~e~~l~i~~Lfsat~~~l~~~i~~aL~A~~l~~~d~dYiV~dg~ 343 (922)
T 1nkt_A 264 WYTEFARLAPLMEKDVHYEVDLRKRTVGVHEKGVEFVEDQLGIDNLYEAANSPLVSYLNNALKAKELFSRDKDYIVRDGE 343 (922)
T ss_dssp HHHHHHHHHHHSCBTTTEEEETTTTEEEECHHHHHHHHHHHTCSSTTCSTTCCHHHHHHHHHHHHHHCCBTTTEEECSSC
T ss_pred HHHHHHHHHHhCcccccceeccCcceEEecHhHHHHHHHHhCCccccCCcchhHHHHHHHHHHHHHHhhcccceeeecCc
Confidence 5444444444444 456677 88999631 22221 2221100
Q ss_pred ----C---------CCCcc-----c--ccCCCCCC---eEEEEC---------------Cc----------cccceEEec
Q 006122 221 ----R---------RGLEG-----V--ELVPRLEP---AILSVE---------------GR----------GFNVQIHYV 252 (660)
Q Consensus 221 ----~---------~~~~~-----~--~~~~~~~~---~~~~~~---------------~~----------~~~v~~~~~ 252 (660)
. ..|.. . .....+.+ ..-.+. |. .|.+++...
T Consensus 344 vviVDe~TGR~m~grr~sdGLHQaieaKe~V~I~~e~~TlatIt~Qnyfr~Y~kL~GMTGTa~te~~Ef~~iY~l~vv~I 423 (922)
T 1nkt_A 344 VLIVDEFTGRVLIGRRYNEGMHQAIEAKEHVEIKAENQTLATITLQNYFRLYDKLAGMTGTAQTEAAELHEIYKLGVVSI 423 (922)
T ss_dssp EEEBCSSSCCBCTTCCCSTTHHHHHHHHTTCCCCCCEEEEEEECHHHHHTTSSEEEEEESCCGGGHHHHHHHHCCEEEEC
T ss_pred eEEEecccCcccCCccccchhhHHHhccccccccccccccceeehHHHHHhhhhhhccccCchhHHHHHHHHhCCCeEEe
Confidence 0 00000 0 00000000 011111 00 011111111
Q ss_pred C---------------CCchhHHHHHHHHHHHHHhcCCCCcEEEEcCCHHHHHHHHHHHHHHhhhccCCCCCeEEEEccC
Q 006122 253 E---------------EPVSDYVQAAVSTVLLIHDKEPPGDILVFLTGQDDIDATIQLLTEEARTSKKNSSGLIILPLYS 317 (660)
Q Consensus 253 ~---------------~~~~~~~~~~~~~~~~~~~~~~~~~iLVF~~~~~~i~~l~~~L~~~~~~~~~~~~~~~v~~lh~ 317 (660)
+ ....+....++..+...+. .+.++||||+|++.++.+++.|.+. ++....+||
T Consensus 424 Ptn~p~~R~d~~d~v~~t~~~K~~al~~~i~~~~~--~gqpvLVft~Sie~sE~Ls~~L~~~---------Gi~~~vLna 492 (922)
T 1nkt_A 424 PTNMPMIREDQSDLIYKTEEAKYIAVVDDVAERYA--KGQPVLIGTTSVERSEYLSRQFTKR---------RIPHNVLNA 492 (922)
T ss_dssp CCSSCCCCEECCCEEESCHHHHHHHHHHHHHHHHH--TTCCEEEEESCHHHHHHHHHHHHHT---------TCCCEEECS
T ss_pred CCCCCcccccCCcEEEeCHHHHHHHHHHHHHHHHh--cCCcEEEEECCHHHHHHHHHHHHHC---------CCCEEEecC
Confidence 1 1112222333333333332 3557999999999999999999886 788899999
Q ss_pred CCCHHHHhhhcCCCCCCCcEEEEeCCCcccccCCCCe-------------------------------------------
Q 006122 318 GLSRAEQEQVFSPTPRGKRKVVISTNIAETSLTLEGI------------------------------------------- 354 (660)
Q Consensus 318 ~l~~~~r~~v~~~f~~g~~~vlvaT~i~e~Gidip~v------------------------------------------- 354 (660)
.....++..+.+.++.| .|+||||+|++|+||+.+
T Consensus 493 k~~~rEa~iia~agr~G--~VtIATnmAgRGtDI~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 570 (922)
T 1nkt_A 493 KYHEQEATIIAVAGRRG--GVTVATNMAGRGTDIVLGGNVDFLTDQRLRERGLDPVETPEEYEAAWHSELPIVKEEASKE 570 (922)
T ss_dssp SCHHHHHHHHHTTTSTT--CEEEEETTCSTTCCCCTTCCHHHHHHHHHHHTTCCTTTSHHHHHHHHHHHHHHHHHHTTHH
T ss_pred ChhHHHHHHHHhcCCCC--eEEEecchhhcCccccCCCCHHHHHHHHHhhccccccccchhhHHHHHHHHHHHHHHHHHh
Confidence 99888888888888887 699999999999999975
Q ss_pred ---------EEEEeCCCccceeecCCCCcccceeeecCHHhHHHhhcccCCC-CCcEEEEccChH
Q 006122 355 ---------VYVVDSGFSKQRFYNPISDIENLVVAPISKASARQRAGRAGRV-RPGKCYRLYTEE 409 (660)
Q Consensus 355 ---------~~VId~g~~k~~~~~~~~~~~~l~~~~~s~~~~~QR~GRaGR~-~~G~~~~l~~~~ 409 (660)
.+||++.+ |-|...|.||+||+||. .||.+..+++.+
T Consensus 571 ~~~V~~~GGlhVI~te~------------------pes~riy~qr~GRTGRqGdpG~s~fflSle 617 (922)
T 1nkt_A 571 AKEVIEAGGLYVLGTER------------------HESRRIDNQLRGRSGRQGDPGESRFYLSLG 617 (922)
T ss_dssp HHHHHHTTSEEEEECSC------------------CSSHHHHHHHHHTSSGGGCCEEEEEEEETT
T ss_pred hhHHHhcCCcEEEeccC------------------CCCHHHHHHHhcccccCCCCeeEEEEechh
Confidence 69999887 88999999999999999 999988877643
No 53
>3h1t_A Type I site-specific restriction-modification system, R (restriction) subunit; hydrolase, restriction enzyme HSDR, ATP-binding; 2.30A {Vibrio vulnificus}
Probab=99.95 E-value=2e-27 Score=267.81 Aligned_cols=319 Identities=15% Similarity=0.076 Sum_probs=177.4
Q ss_pred CcHHHHHHHHHHHhc-----CCEEEEEcCCCCcHHHHHHHHHHhc---ccc-----CCCeEEEEeCchHHHHHHHHHHHH
Q 006122 50 PVYKYRTAILYLVET-----HATTIIVGETGSGKTTQIPQYLKEA---GWA-----DGGRVIACTQPRRLAVQAVASRVA 116 (660)
Q Consensus 50 Pi~~~~~~i~~~l~~-----~~~vii~apTGsGKT~~ip~~l~~~---~~~-----~~~~~i~v~p~r~la~~~~~~~~~ 116 (660)
.+..+|.+.++.+.+ ++.+++++|||||||.++..++... .+. .+.++++++|++.|+.|...+.+.
T Consensus 178 ~lr~~Q~~ai~~~~~~~~~~~~~~ll~~~TGsGKT~~~~~~~~~l~~~~~~~~~~~~~~~vlil~P~~~L~~Q~~~~~~~ 257 (590)
T 3h1t_A 178 SPRYYQQIAINRAVQSVLQGKKRSLITMATGTGKTVVAFQISWKLWSARWNRTGDYRKPRILFLADRNVLVDDPKDKTFT 257 (590)
T ss_dssp -CCHHHHHHHHHHHHHHHTTCSEEEEEECTTSCHHHHHHHHHHHHHHTTCCSSCSSSCCCEEEEEC-----------CCT
T ss_pred CchHHHHHHHHHHHHHHhcCCCceEEEecCCCChHHHHHHHHHHHHhcccccccccCCCeEEEEeCCHHHHHHHHHHHHH
Confidence 467778777776654 5778999999999995543333322 111 346789999999998875422222
Q ss_pred HHhCCeeeeEEeeeeeccccCCCCCceEEEechHHHHHHHhc-----CCCCCCCcEEEEeCCCcCCcChhHHHHHHHHHH
Q 006122 117 EEMGVKVGEEVGYTIRFEDFTNKDLTAIKFLTDGVLLREMMD-----DPLLTKYSVIMVDEAHERSISTDILLGLLKKIQ 191 (660)
Q Consensus 117 ~~~~~~~~~~vg~~~~~~~~~~~~~~~I~v~T~~~ll~~l~~-----~~~l~~~~~iIiDE~Her~~~~d~ll~~l~~~~ 191 (660)
.++..++...+ ..... ..+|+|+|++.|...... ......+++||||||| |....+ ...++.+.
T Consensus 258 -~~~~~~~~~~~------~~~~~-~~~I~v~T~~~l~~~~~~~~~~~~~~~~~~~lvIiDEaH-~~~~~~--~~~~~~il 326 (590)
T 3h1t_A 258 -PFGDARHKIEG------GKVVK-SREIYFAIYQSIASDERRPGLYKEFPQDFFDLIIIDECH-RGSARD--NSNWREIL 326 (590)
T ss_dssp -TTCSSEEECCC--------CCS-SCSEEEEEGGGC------CCGGGGSCTTSCSEEEESCCC------------CHHHH
T ss_pred -hcchhhhhhhc------cCCCC-CCcEEEEEhhhhccccccccccccCCCCccCEEEEECCc-cccccc--hHHHHHHH
Confidence 22332222111 11223 689999999999876532 2225678999999999 554321 12334444
Q ss_pred HhcCCceEEEeecccc---hHHHHHHhhcCCCCCCCcccccCCC-CCCeEEEECCcc--ccce---------------EE
Q 006122 192 RCRSDLRLIISSATIE---AKSMSAFFHARKGRRGLEGVELVPR-LEPAILSVEGRG--FNVQ---------------IH 250 (660)
Q Consensus 192 ~~~~~~kii~~SAT~~---~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~--~~v~---------------~~ 250 (660)
...+..++++||||+. ......+|+................ .+..+..+.... .... ..
T Consensus 327 ~~~~~~~~l~lTATP~~~~~~~~~~~f~~~~~~~~~~~~i~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 406 (590)
T 3h1t_A 327 EYFEPAFQIGMTATPLREDNRDTYRYFGNPIYTYSLRQGIDDGFLAPYRVHRVISEVDAAGWRPSKGDVDRFGREIPDGE 406 (590)
T ss_dssp HHSTTSEEEEEESSCSCTTTHHHHHHSCSCSEEECHHHHHHHTSSCCEEEEEEEETTCC---------------------
T ss_pred HhCCcceEEEeccccccccchhHHHHcCCceEecCHHHHhhCCccCCcEEEEeeeeeecccccccccccccccccccccc
Confidence 5556688999999983 3445667754221111000000000 001111111000 0000 00
Q ss_pred ecCCCch------hHHHHHHHHHHHHH-hcCCCCcEEEEcCCHHHHHHHHHHHHHHhhhccCCCCCeEEEEccCCCCHHH
Q 006122 251 YVEEPVS------DYVQAAVSTVLLIH-DKEPPGDILVFLTGQDDIDATIQLLTEEARTSKKNSSGLIILPLYSGLSRAE 323 (660)
Q Consensus 251 ~~~~~~~------~~~~~~~~~~~~~~-~~~~~~~iLVF~~~~~~i~~l~~~L~~~~~~~~~~~~~~~v~~lh~~l~~~~ 323 (660)
|...... .........+.... .....+++||||+++++++.+++.|.+........ ....+..+||.++ ++
T Consensus 407 ~~~~~~~~~~~~~~r~~~i~~~l~~~l~~~~~~~k~lVF~~~~~~a~~l~~~L~~~~~~~~~~-~~~~~~~i~g~~~-~~ 484 (590)
T 3h1t_A 407 YQTKDFERVIALKARTDAFAKHLTDFMKRTDRFAKTIVFCVDQEHADEMRRALNNLNSDLSRK-HPDYVARVTSEEG-KI 484 (590)
T ss_dssp --CCSHHHHHHHHHTHHHHHHHHHHHHHHHCTTSEEEEEESSHHHHHHHHHHHHHHTHHHHTT-CTTSEEECSSTTH-HH
T ss_pred CCHHHhhhHhcChHHHHHHHHHHHHHHHhcCCCccEEEEECCHHHHHHHHHHHHHhhhhhhcc-CCCeEEEEeCCCh-HH
Confidence 0000000 01112222232222 22456889999999999999999998864332111 1223678899875 37
Q ss_pred HhhhcCCCCCCCcE---EEEeCCCcccccCCCCeEEEEeCCCccceeecCCCCcccceeeecCHHhHHHhhcccCCCCC
Q 006122 324 QEQVFSPTPRGKRK---VVISTNIAETSLTLEGIVYVVDSGFSKQRFYNPISDIENLVVAPISKASARQRAGRAGRVRP 399 (660)
Q Consensus 324 r~~v~~~f~~g~~~---vlvaT~i~e~Gidip~v~~VId~g~~k~~~~~~~~~~~~l~~~~~s~~~~~QR~GRaGR~~~ 399 (660)
|+.+++.|++|+.+ |++||+++++|+|+|++++||.++. +.|...|+||+||+||..+
T Consensus 485 r~~~l~~F~~~~~~~~~ilvtt~~l~~GiDip~v~~Vi~~~~------------------~~s~~~~~Q~iGR~~R~~~ 545 (590)
T 3h1t_A 485 GKGHLSRFQELETSTPVILTTSQLLTTGVDAPTCKNVVLARV------------------VNSMSEFKQIVGRGTRLRE 545 (590)
T ss_dssp HHHHHHHHHCTTCCCCCEEEESSTTTTTCCCTTEEEEEEESC------------------CCCHHHHHHHHTTSCCCBG
T ss_pred HHHHHHHHhCCCCCCCEEEEECChhhcCccchheeEEEEEec------------------CCChHHHHHHHhhhcccCc
Confidence 89999999998766 8999999999999999999998554 6788999999999999754
No 54
>3llm_A ATP-dependent RNA helicase A; alpha-beta-alpha, structural genomics, structural genomics consortium, SGC, activator, ATP-binding, DNA-binding; HET: ADP; 2.80A {Homo sapiens}
Probab=99.93 E-value=1e-25 Score=223.20 Aligned_cols=179 Identities=34% Similarity=0.561 Sum_probs=151.6
Q ss_pred chHhHHHHhcCCCcHHHHHHHHHHHhcCCEEEEEcCCCCcHHHHHHHHHHhccccCC----CeEEEEeCchHHHHHHHHH
Q 006122 38 GYASIEKQRQRLPVYKYRTAILYLVETHATTIIVGETGSGKTTQIPQYLKEAGWADG----GRVIACTQPRRLAVQAVAS 113 (660)
Q Consensus 38 ~~~~~~~~~~~lPi~~~~~~i~~~l~~~~~vii~apTGsGKT~~ip~~l~~~~~~~~----~~~i~v~p~r~la~~~~~~ 113 (660)
.+..+.+.+..+|++.+|++++..+.++++++++||||||||++++.++.+.....+ .+++++.|+| ..+.++++
T Consensus 49 ~~~~~~~~~~~~p~~~~q~~~i~~i~~g~~~~i~g~TGsGKTt~~~~~~~~~~~~~~~~~~~~~l~~~p~~-~la~q~~~ 127 (235)
T 3llm_A 49 DLQAILQERELLPVKKFESEILEAISQNSVVIIRGATGCGKTTQVPQFILDDFIQNDRAAECNIVVTQPRR-ISAVSVAE 127 (235)
T ss_dssp HHHHHHHHHHTSGGGGGHHHHHHHHHHCSEEEEECCTTSSHHHHHHHHHHHHHHHTTCGGGCEEEEEESSH-HHHHHHHH
T ss_pred HHHHHHHHHhcCChHHHHHHHHHHHhcCCEEEEEeCCCCCcHHhHHHHHhcchhhcCCCCceEEEEeccch-HHHHHHHH
Confidence 345566778899999999999999999999999999999999988877765433222 2455555554 55567788
Q ss_pred HHHHHhCCeeeeEEeeeeeccccCCCCCceEEEechHHHHHHHhcCCCCCCCcEEEEeCCCcCCcChhHHHHHHHHHHHh
Q 006122 114 RVAEEMGVKVGEEVGYTIRFEDFTNKDLTAIKFLTDGVLLREMMDDPLLTKYSVIMVDEAHERSISTDILLGLLKKIQRC 193 (660)
Q Consensus 114 ~~~~~~~~~~~~~vg~~~~~~~~~~~~~~~I~v~T~~~ll~~l~~~~~l~~~~~iIiDE~Her~~~~d~ll~~l~~~~~~ 193 (660)
+++..++..++..+||.++++.......++|+|+|||++++.+.. .+.++++|||||+|+|+++.++.+..++.+...
T Consensus 128 ~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~Ivv~Tpg~l~~~l~~--~l~~~~~lVlDEah~~~~~~~~~~~~l~~i~~~ 205 (235)
T 3llm_A 128 RVAFERGEEPGKSCGYSVRFESILPRPHASIMFCTVGVLLRKLEA--GIRGISHVIVDEIHERDINTDFLLVVLRDVVQA 205 (235)
T ss_dssp HHHHTTTCCTTSSEEEEETTEEECCCSSSEEEEEEHHHHHHHHHH--CCTTCCEEEECCTTSCCHHHHHHHHHHHHHHHH
T ss_pred HHHHHhccccCceEEEeechhhccCCCCCeEEEECHHHHHHHHHh--hhcCCcEEEEECCccCCcchHHHHHHHHHHHhh
Confidence 999999988899999998888776544799999999999999876 389999999999999899999999999999888
Q ss_pred cCCceEEEeecccchHHHHHHhhcCC
Q 006122 194 RSDLRLIISSATIEAKSMSAFFHARK 219 (660)
Q Consensus 194 ~~~~kii~~SAT~~~~~~~~~~~~~~ 219 (660)
.++.|+++||||++.+.+++||++.+
T Consensus 206 ~~~~~~il~SAT~~~~~~~~~~~~~p 231 (235)
T 3llm_A 206 YPEVRIVLMSATIDTSMFCEYFFNCP 231 (235)
T ss_dssp CTTSEEEEEECSSCCHHHHHHTTSCC
T ss_pred CCCCeEEEEecCCCHHHHHHHcCCCC
Confidence 88999999999998888999999876
No 55
>3eaq_A Heat resistant RNA dependent ATPase; DEAD box RNA helicase, dimer, ATP-binding, helicase, hydrolase, nucleotide-binding; 2.30A {Thermus thermophilus} PDB: 3ear_A 3eas_A
Probab=99.92 E-value=2.9e-26 Score=222.97 Aligned_cols=171 Identities=21% Similarity=0.286 Sum_probs=145.0
Q ss_pred HHHHHHhcCCCCcEEEEcCCHHHHHHHHHHHHHHhhhccCCCCCeEEEEccCCCCHHHHhhhcCCCCCCCcEEEEeCCCc
Q 006122 266 TVLLIHDKEPPGDILVFLTGQDDIDATIQLLTEEARTSKKNSSGLIILPLYSGLSRAEQEQVFSPTPRGKRKVVISTNIA 345 (660)
Q Consensus 266 ~~~~~~~~~~~~~iLVF~~~~~~i~~l~~~L~~~~~~~~~~~~~~~v~~lh~~l~~~~r~~v~~~f~~g~~~vlvaT~i~ 345 (660)
.+..+.....++++||||+++++++.+++.|.+. ++.+.++||+|++++|.++++.|++|..+|||||+++
T Consensus 21 ~l~~ll~~~~~~~~lVF~~~~~~~~~l~~~L~~~---------~~~~~~lhg~~~~~~r~~~~~~f~~g~~~vlvaT~~~ 91 (212)
T 3eaq_A 21 VLSDLLYVASPDRAMVFTRTKAETEEIAQGLLRL---------GHPAQALHGDLSQGERERVLGAFRQGEVRVLVATDVA 91 (212)
T ss_dssp HHHHHHHHHCCSCEEEECSSHHHHHHHHHHHHHH---------TCCEEEECSSSCHHHHHHHHHHHHSSSCCEEEECTTT
T ss_pred HHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHHHc---------CCCEEEEECCCCHHHHHHHHHHHHCCCCeEEEecChh
Confidence 3334444456789999999999999999999886 7889999999999999999999999999999999999
Q ss_pred ccccCCCCeEEEEeCCCccceeecCCCCcccceeeecCHHhHHHhhcccCCC-CCcEEEEccChHH--------------
Q 006122 346 ETSLTLEGIVYVVDSGFSKQRFYNPISDIENLVVAPISKASARQRAGRAGRV-RPGKCYRLYTEEY-------------- 410 (660)
Q Consensus 346 e~Gidip~v~~VId~g~~k~~~~~~~~~~~~l~~~~~s~~~~~QR~GRaGR~-~~G~~~~l~~~~~-------------- 410 (660)
++|+|+|++++||++|+ |.|..+|.||+|||||. ++|.||.++++.+
T Consensus 92 ~~Gidi~~v~~Vi~~~~------------------p~~~~~~~qr~GR~gR~g~~g~~~~l~~~~~~~~~~~i~~~~~~~ 153 (212)
T 3eaq_A 92 ARGLDIPQVDLVVHYRL------------------PDRAEAYQHRSGRTGRAGRGGRVVLLYGPRERRDVEALERAVGRR 153 (212)
T ss_dssp TCSSSCCCBSEEEESSC------------------CSSHHHHHHHHTTBCCCC--BEEEEEECGGGHHHHHHHHHHHSSC
T ss_pred hcCCCCccCcEEEECCC------------------CcCHHHHHHHhcccCCCCCCCeEEEEEchhHHHHHHHHHHHhcCc
Confidence 99999999999999888 88999999999999999 6999999999775
Q ss_pred hhhhCCCCCCCccccccchhHHHHHHHcCCCCccCC-----CCCCCCCHHHHHHHHHHH
Q 006122 411 FVKEIPAEGIPEMQRSNLVSCVIQLKALGIDNILGF-----DWPASPPPEAMIRALEVL 464 (660)
Q Consensus 411 ~~~~~~~~~~pei~~~~l~~~~l~l~~~~~~~~~~~-----~~~~~p~~~~~~~al~~L 464 (660)
+.. ++....+|+.+..+..+++.++.++..+...| +++++|+++.+..|+..|
T Consensus 154 ~~~-~~~~~~~ei~~~~~~~~~~~l~~~~~~~~~~~~~~~~~l~~~~~~~~l~~al~~l 211 (212)
T 3eaq_A 154 FKR-VNPPTPEEVLEAKWRHLLARLARVPEKDYRLYQDFAGRLFAEGRVEVVAALLALL 211 (212)
T ss_dssp CEE-CCCCCHHHHHHHHHHHHHHHHTTSCHHHHTTTHHHHHHHHHHTCHHHHHHHHHHH
T ss_pred Cee-cCCCCHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHhcCCHHHHHHHHHhh
Confidence 222 45556677888888999999988876555555 567888889998888765
No 56
>3dmq_A RNA polymerase-associated protein RAPA; SWF2/SNF2, transcription factor, RNA polymerase recycling, activator, ATP-binding, DNA-binding; 3.20A {Escherichia coli K12}
Probab=99.91 E-value=1.9e-24 Score=254.50 Aligned_cols=331 Identities=15% Similarity=0.141 Sum_probs=199.1
Q ss_pred CCcHHHHHHHHHHHhc--CCEEEEEcCCCCcHHHHHHHHHHhccc-cCCCeEEEEeCchHHHHHHHHHHHHHHhCCeeee
Q 006122 49 LPVYKYRTAILYLVET--HATTIIVGETGSGKTTQIPQYLKEAGW-ADGGRVIACTQPRRLAVQAVASRVAEEMGVKVGE 125 (660)
Q Consensus 49 lPi~~~~~~i~~~l~~--~~~vii~apTGsGKT~~ip~~l~~~~~-~~~~~~i~v~p~r~la~~~~~~~~~~~~~~~~~~ 125 (660)
..++++|.+++..+.. +..+++.++||+|||.+.-.++..... ....++++++|+ .|.. ++...+.+.++..+..
T Consensus 152 ~~LrpyQ~eav~~~l~~~~~~~LLad~tGlGKTi~Ai~~i~~l~~~g~~~rvLIVvP~-sLl~-Qw~~E~~~~f~l~v~v 229 (968)
T 3dmq_A 152 TSLIPHQLNIAHDVGRRHAPRVLLADEVGLGKTIEAGMILHQQLLSGAAERVLIIVPE-TLQH-QWLVEMLRRFNLRFAL 229 (968)
T ss_dssp SCCCHHHHHHHHHHHHSSSCEEEECCCTTSCHHHHHHHHHHHHHHTSSCCCEEEECCT-TTHH-HHHHHHHHHSCCCCEE
T ss_pred CCCcHHHHHHHHHHHHhcCCCEEEECCCCCcHHHHHHHHHHHHHHhCCCCeEEEEeCH-HHHH-HHHHHHHHHhCCCEEE
Confidence 4578899888877665 347999999999999655444433321 123467888888 6664 5566666677776654
Q ss_pred EEeeeee---ccccCCCCCceEEEechHHHHHHHhcC--CCCCCCcEEEEeCCCcCCcCh---hHHHHHHHHHHHhcCCc
Q 006122 126 EVGYTIR---FEDFTNKDLTAIKFLTDGVLLREMMDD--PLLTKYSVIMVDEAHERSIST---DILLGLLKKIQRCRSDL 197 (660)
Q Consensus 126 ~vg~~~~---~~~~~~~~~~~I~v~T~~~ll~~l~~~--~~l~~~~~iIiDE~Her~~~~---d~ll~~l~~~~~~~~~~ 197 (660)
..|.... ..........+|+++|++.+.+..... ....++++|||||+|...-.. ......++.+.. ...
T Consensus 230 ~~~~~~~~~~~~~~~~~~~~dIvI~T~~~L~~~~~~~~~l~~~~~dlVIvDEAH~~kn~~~~~s~~~~~l~~L~~--~~~ 307 (968)
T 3dmq_A 230 FDDERYAEAQHDAYNPFDTEQLVICSLDFARRSKQRLEHLCEAEWDLLVVDEAHHLVWSEDAPSREYQAIEQLAE--HVP 307 (968)
T ss_dssp CCHHHHHHHHHTTCSSSTTCSEEEECHHHHHTSTTTTHHHHTSCCCEEEECCSSCCCCBTTBCCHHHHHHHHHHT--TCS
T ss_pred EccchhhhhhhhcccccccCCEEEEcHHHHhhCHHHHHHhhhcCCCEEEehhhHhhcCCCCcchHHHHHHHHHhh--cCC
Confidence 4442211 011112225799999999886421110 114579999999999432111 112233333322 334
Q ss_pred eEEEeecccc---hH---HHHHHhhcCCC-------------------------CCCCcc-----c-ccCC---------
Q 006122 198 RLIISSATIE---AK---SMSAFFHARKG-------------------------RRGLEG-----V-ELVP--------- 231 (660)
Q Consensus 198 kii~~SAT~~---~~---~~~~~~~~~~~-------------------------~~~~~~-----~-~~~~--------- 231 (660)
++++||||+- .. .+..++..... ...... . ....
T Consensus 308 ~~L~LTATPi~n~~~el~sll~~L~p~~~~~~~~f~~~~~~~~~i~~~~~~l~~~~~~~~~~~~~L~~~l~~~~~~~l~~ 387 (968)
T 3dmq_A 308 GVLLLTATPEQLGMESHFARLRLLDPNRFHDFAQFVEEQKNYCPVADAVAMLLAGNKLSNDELNMLGEMIGEQDIEPLLQ 387 (968)
T ss_dssp SEEESCSSCSSSCSSCTHHHHHHHCTTTCSSTHHHHHHHHHHHHHHHHHHTTTTSCCCCGGGTTSSTTTTCTTCSSTTGG
T ss_pred cEEEEEcCCccCCHHHHHHHHHhcCccccCCHHHHHHHHHhHHHHHHHHHHHhccCCCCHHHHHHHHHHhcchhhHHHHh
Confidence 6999999982 11 11111111000 000000 0 0000
Q ss_pred ------------------------CCCCeEEEECC---ccccce---EEecCCCc-------------------------
Q 006122 232 ------------------------RLEPAILSVEG---RGFNVQ---IHYVEEPV------------------------- 256 (660)
Q Consensus 232 ------------------------~~~~~~~~~~~---~~~~v~---~~~~~~~~------------------------- 256 (660)
......+.... ..+|.. .+....+.
T Consensus 388 ~~~~~~~~~~~~~~~~i~~lld~~g~~~~l~r~~r~~i~~~p~r~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 467 (968)
T 3dmq_A 388 AANSDSEDAQSARQELVSMLMDRHGTSRVLFRNTRNGVKGFPKRELHTIKLPLPTQYQTAIKVSGIMGARKSAEDRARDM 467 (968)
T ss_dssp GTCCCSSCSTTTHHHHHHHHGGGCTTTTTEECCCTTTCCCCCCCCCCEEEECCCHHHHHHHHHHHHTTCCSSGGGGTHHH
T ss_pred cccchhhhhHHHHHHHHHHHHHhhCcchhhhhhhhhhhcccChhheEeeecCCCHHHHHHHHHHhhhhhhhhhHHHHhhh
Confidence 00000000000 001000 00000000
Q ss_pred ----------------hhHHHHHHHHHHHHHhcCCCCcEEEEcCCHHHHHHHHHHHHHHhhhccCCCCCeEEEEccCCCC
Q 006122 257 ----------------SDYVQAAVSTVLLIHDKEPPGDILVFLTGQDDIDATIQLLTEEARTSKKNSSGLIILPLYSGLS 320 (660)
Q Consensus 257 ----------------~~~~~~~~~~~~~~~~~~~~~~iLVF~~~~~~i~~l~~~L~~~~~~~~~~~~~~~v~~lh~~l~ 320 (660)
..........+..+.....++++||||+++..++.+++.|.+. .++.+..+||+|+
T Consensus 468 l~pe~~~~~l~~~~~~~~~~~~K~~~L~~ll~~~~~~k~iVF~~~~~~~~~l~~~L~~~--------~g~~~~~lhG~~~ 539 (968)
T 3dmq_A 468 LYPERIYQEFEGDNATWWNFDPRVEWLMGYLTSHRSQKVLVICAKAATALQLEQVLRER--------EGIRAAVFHEGMS 539 (968)
T ss_dssp HCSGGGTTTTTSSSCCTTTTSHHHHHHHHHHHHTSSSCCCEECSSTHHHHHHHHHHHTT--------TCCCEEEECTTSC
T ss_pred cChHHHHHHhhhhhhcccCccHHHHHHHHHHHhCCCCCEEEEeCcHHHHHHHHHHHHHH--------cCCcEEEEeCCCC
Confidence 0000112333444444467889999999999999999999753 1778999999999
Q ss_pred HHHHhhhcCCCCCCC--cEEEEeCCCcccccCCCCeEEEEeCCCccceeecCCCCcccceeeecCHHhHHHhhcccCCC-
Q 006122 321 RAEQEQVFSPTPRGK--RKVVISTNIAETSLTLEGIVYVVDSGFSKQRFYNPISDIENLVVAPISKASARQRAGRAGRV- 397 (660)
Q Consensus 321 ~~~r~~v~~~f~~g~--~~vlvaT~i~e~Gidip~v~~VId~g~~k~~~~~~~~~~~~l~~~~~s~~~~~QR~GRaGR~- 397 (660)
..+|.++++.|++|+ .+|||||+++++|+|+|++++||+++. |.+.+.|.||+||+||.
T Consensus 540 ~~~R~~~l~~F~~g~~~~~vLvaT~v~~~GlDl~~~~~VI~~d~------------------p~~~~~~~Q~~GR~~R~G 601 (968)
T 3dmq_A 540 IIERDRAAAWFAEEDTGAQVLLCSEIGSEGRNFQFASHMVMFDL------------------PFNPDLLEQRIGRLDRIG 601 (968)
T ss_dssp TTHHHHHHHHHHSTTSSCEEEECSCCTTCSSCCTTCCEEECSSC------------------CSSHHHHHHHHHTTSCSS
T ss_pred HHHHHHHHHHHhCCCCcccEEEecchhhcCCCcccCcEEEEecC------------------CCCHHHHHHHhhccccCC
Confidence 999999999999998 999999999999999999999999666 77889999999999998
Q ss_pred CCc--EEEEccChH
Q 006122 398 RPG--KCYRLYTEE 409 (660)
Q Consensus 398 ~~G--~~~~l~~~~ 409 (660)
+.| .+|.++.+.
T Consensus 602 q~~~v~v~~~~~~~ 615 (968)
T 3dmq_A 602 QAHDIQIHVPYLEK 615 (968)
T ss_dssp SCSCCEEEEEEETT
T ss_pred CCceEEEEEecCCC
Confidence 444 456666543
No 57
>3i32_A Heat resistant RNA dependent ATPase; RNA helicase, dimer, RNA recognition motif, ATP-BIND helicase, nucleotide-binding; 2.80A {Thermus thermophilus}
Probab=99.91 E-value=3.7e-25 Score=225.28 Aligned_cols=190 Identities=20% Similarity=0.267 Sum_probs=152.8
Q ss_pred eEEecCCCchhHHHHHHHHHHHHHhcCCCCcEEEEcCCHHHHHHHHHHHHHHhhhccCCCCCeEEEEccCCCCHHHHhhh
Q 006122 248 QIHYVEEPVSDYVQAAVSTVLLIHDKEPPGDILVFLTGQDDIDATIQLLTEEARTSKKNSSGLIILPLYSGLSRAEQEQV 327 (660)
Q Consensus 248 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iLVF~~~~~~i~~l~~~L~~~~~~~~~~~~~~~v~~lh~~l~~~~r~~v 327 (660)
+.++......+..+. +..+.....++++||||+++++++.+++.|.+. ++.+.++||+|++.+|..+
T Consensus 4 ~~~~i~~~~~~K~~~----L~~ll~~~~~~~~LVF~~t~~~~~~l~~~L~~~---------g~~~~~lhg~l~~~~r~~~ 70 (300)
T 3i32_A 4 EEEAVPAPVRGRLEV----LSDLLYVASPDRAMVFTRTKAETEEIAQGLLRL---------GHPAQALHGDMSQGERERV 70 (300)
T ss_dssp EEEEEECCSSSHHHH----HHHHHHHHCCSSEEEECSSHHHHHHHHHHHHTT---------TCCEEEECSCCCTHHHHHH
T ss_pred EEEEEECCHHHHHHH----HHHHHHhcCCCCEEEEECCHHHHHHHHHHHHhC---------CCCEEEEeCCCCHHHHHHH
Confidence 344444444443332 333333345789999999999999999999764 7889999999999999999
Q ss_pred cCCCCCCCcEEEEeCCCcccccCCCCeEEEEeCCCccceeecCCCCcccceeeecCHHhHHHhhcccCCC-CCcEEEEcc
Q 006122 328 FSPTPRGKRKVVISTNIAETSLTLEGIVYVVDSGFSKQRFYNPISDIENLVVAPISKASARQRAGRAGRV-RPGKCYRLY 406 (660)
Q Consensus 328 ~~~f~~g~~~vlvaT~i~e~Gidip~v~~VId~g~~k~~~~~~~~~~~~l~~~~~s~~~~~QR~GRaGR~-~~G~~~~l~ 406 (660)
++.|++|.++|||||+++++|+|+|++++||++|+ |.+..+|.||+|||||. ++|.||.++
T Consensus 71 ~~~f~~g~~~vLVaT~va~~Gidi~~v~~VI~~d~------------------p~s~~~y~Qr~GRagR~g~~G~~i~l~ 132 (300)
T 3i32_A 71 MGAFRQGEVRVLVATDVAARGLDIPQVDLVVHYRM------------------PDRAEAYQHRSGRTGRAGRGGRVVLLY 132 (300)
T ss_dssp HHHHHHTSCCEEEECSTTTCSTTCCCCSEEEESSC------------------CSSTTHHHHHHTCCC-----CEEEEEE
T ss_pred HHHhhcCCceEEEEechhhcCccccceeEEEEcCC------------------CCCHHHHHHHccCcCcCCCCceEEEEe
Confidence 99999999999999999999999999999999887 78899999999999999 799999999
Q ss_pred ChHH--------------hhhhCCCCCCCccccccchhHHHHHHHcCCCCccCC-----CCCCCCCHHHHHHHHHHHHHC
Q 006122 407 TEEY--------------FVKEIPAEGIPEMQRSNLVSCVIQLKALGIDNILGF-----DWPASPPPEAMIRALEVLYSL 467 (660)
Q Consensus 407 ~~~~--------------~~~~~~~~~~pei~~~~l~~~~l~l~~~~~~~~~~~-----~~~~~p~~~~~~~al~~L~~l 467 (660)
++.+ +.. +.....+||.+..+..+++.++.++..+...| .++++|+.+.+..|+..|...
T Consensus 133 ~~~e~~~~~~ie~~~~~~~~~-~~~~~~~ei~~~~~~~~~~~l~~~~~~~~~~f~~~~~~l~~~~~~e~laaal~~l~~~ 211 (300)
T 3i32_A 133 GPRERRDVEALERAVGRRFKR-VNPPTPEEVLEAKWRHLLARLARVPEKDYRLYQDFAGRLFAEGRVEVVAALLALLLGG 211 (300)
T ss_dssp CSSTHHHHHHHHHHHTCCCEE-CCCCCHHHHHHHHHHHHHHHHTTSCHHHHHTTHHHHHHHHHHTCHHHHHHHHHHHHTC
T ss_pred ChHHHHHHHHHHHHhCCcceE-eCCCCHHHHHHHHHHHHHHHHHhcchhhHHHHHHHHHHHHhcCcHHHHHHHHHHHhcC
Confidence 8765 333 55556788999999999999988776666666 567889999999999999766
Q ss_pred CC
Q 006122 468 GV 469 (660)
Q Consensus 468 ga 469 (660)
..
T Consensus 212 ~~ 213 (300)
T 3i32_A 212 AP 213 (300)
T ss_dssp CC
T ss_pred Cc
Confidence 54
No 58
>1z63_A Helicase of the SNF2/RAD54 hamily; protein-DNA complex, hydrolase/DNA complex complex; 3.00A {Sulfolobus solfataricus} SCOP: c.37.1.19 c.37.1.19 PDB: 1z6a_A
Probab=99.90 E-value=3.5e-23 Score=228.63 Aligned_cols=327 Identities=15% Similarity=0.117 Sum_probs=187.4
Q ss_pred CCcHHHHHHHHHHH----hcCCEEEEEcCCCCcHHHHHHHHHHhcc-ccCCCeEEEEeCchHHHHHHHHHHHHHHh-CCe
Q 006122 49 LPVYKYRTAILYLV----ETHATTIIVGETGSGKTTQIPQYLKEAG-WADGGRVIACTQPRRLAVQAVASRVAEEM-GVK 122 (660)
Q Consensus 49 lPi~~~~~~i~~~l----~~~~~vii~apTGsGKT~~ip~~l~~~~-~~~~~~~i~v~p~r~la~~~~~~~~~~~~-~~~ 122 (660)
..++++|.+.++.+ ..+..+|+..+||+|||.++-.++.... .....++++++|. .+. .++.+.+.+.. +..
T Consensus 36 ~~L~~~Q~~~v~~l~~~~~~~~~~ilad~~GlGKT~~ai~~i~~~~~~~~~~~~LIv~P~-~l~-~qw~~e~~~~~~~~~ 113 (500)
T 1z63_A 36 ANLRPYQIKGFSWMRFMNKLGFGICLADDMGLGKTLQTIAVFSDAKKENELTPSLVICPL-SVL-KNWEEELSKFAPHLR 113 (500)
T ss_dssp SCCCHHHHHHHHHHHHHHHTTCCEEECCCTTSCHHHHHHHHHHHHHHTTCCSSEEEEECS-TTH-HHHHHHHHHHCTTSC
T ss_pred ccchHHHHHHHHHHHHHhhCCCCEEEEeCCCCcHHHHHHHHHHHHHhcCCCCCEEEEccH-HHH-HHHHHHHHHHCCCce
Confidence 34788898887766 4567799999999999955443433321 1233567888884 555 45666666554 233
Q ss_pred eeeEEeeeeeccccCCCCCceEEEechHHHHHHHhcCCCCCCCcEEEEeCCCcCCcChhHHHHHHHHHHHhcCCceEEEe
Q 006122 123 VGEEVGYTIRFEDFTNKDLTAIKFLTDGVLLREMMDDPLLTKYSVIMVDEAHERSISTDILLGLLKKIQRCRSDLRLIIS 202 (660)
Q Consensus 123 ~~~~vg~~~~~~~~~~~~~~~I~v~T~~~ll~~l~~~~~l~~~~~iIiDE~Her~~~~d~ll~~l~~~~~~~~~~kii~~ 202 (660)
+....|.. ...... ..+|+++|++.+.+... ....++++||+||||. ..+... ...+.+... +..+.+++
T Consensus 114 v~~~~g~~---~~~~~~-~~~ivi~t~~~l~~~~~--l~~~~~~~vIvDEaH~-~kn~~~--~~~~~l~~l-~~~~~l~L 183 (500)
T 1z63_A 114 FAVFHEDR---SKIKLE-DYDIILTTYAVLLRDTR--LKEVEWKYIVIDEAQN-IKNPQT--KIFKAVKEL-KSKYRIAL 183 (500)
T ss_dssp EEECSSST---TSCCGG-GSSEEEEEHHHHTTCHH--HHTCCEEEEEEETGGG-GSCTTS--HHHHHHHTS-CEEEEEEE
T ss_pred EEEEecCc---hhcccc-CCcEEEeeHHHHhccch--hcCCCcCEEEEeCccc-cCCHhH--HHHHHHHhh-ccCcEEEE
Confidence 33222221 111122 57899999999875432 1134689999999994 322221 112222222 44678999
Q ss_pred eccc---chHHHH---HHhhcCCCCCC---------------Ccc-cccCCCCCCeEEEECC------ccccce---EEe
Q 006122 203 SATI---EAKSMS---AFFHARKGRRG---------------LEG-VELVPRLEPAILSVEG------RGFNVQ---IHY 251 (660)
Q Consensus 203 SAT~---~~~~~~---~~~~~~~~~~~---------------~~~-~~~~~~~~~~~~~~~~------~~~~v~---~~~ 251 (660)
|||+ +..++- +|+........ ... ........+..+.... ...|.. ..+
T Consensus 184 TaTP~~n~~~el~~ll~~l~p~~~~~~~~f~~~~~~~~~~~~~~~~~~l~~~l~~~~lrr~k~~~~~~~~lp~~~~~~v~ 263 (500)
T 1z63_A 184 TGTPIENKVDDLWSIMTFLNPGLLGSYSEFKSKFATPIKKGDNMAKEELKAIISPFILRRTKYDKAIINDLPDKIETNVY 263 (500)
T ss_dssp CSSCSTTCHHHHHHHHHHHSTTTTCCHHHHHTTTHHHHHTTCHHHHHHHHHHHTTTEECCCTTCHHHHTTSCSEEEEEEE
T ss_pred ecCCCCCCHHHHHHHHHHhCCCcCCCHHHHHHHhccccccccHHHHHHHHHHHhhHeeeecccccchhhcCCCCeEEEEE
Confidence 9999 222221 22211100000 000 0000000000000000 000000 001
Q ss_pred cCCCch--h-HH------------------------------------------------HHHHHHHHHHHh--cCCCCc
Q 006122 252 VEEPVS--D-YV------------------------------------------------QAAVSTVLLIHD--KEPPGD 278 (660)
Q Consensus 252 ~~~~~~--~-~~------------------------------------------------~~~~~~~~~~~~--~~~~~~ 278 (660)
.+.... . |. ......+..+.. ...+.+
T Consensus 264 ~~l~~~~~~~y~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lr~~~~~p~l~~~~~~~~~~s~K~~~l~~~l~~~~~~~~k 343 (500)
T 1z63_A 264 CNLTPEQAAMYKAEVENLFNNIDSVTGIKRKGMILSTLLKLKQIVDHPALLKGGEQSVRRSGKMIRTMEIIEEALDEGDK 343 (500)
T ss_dssp ECCCHHHHHHHHHHHHHHTTTTTTCCTHHHHHHHHHHHHHHHHHTTCTHHHHCSCCCSTTCHHHHHHHHHHHHHHTTTCC
T ss_pred cCCCHHHHHHHHHHHHHHHHHHHhhhcccchHHHHHHHHHHHHHhCCHHHhcCccchhhcchhHHHHHHHHHHHHccCCc
Confidence 110000 0 00 000011111111 135678
Q ss_pred EEEEcCCHHHHHHHHHHHHHHhhhccCCCCCeEEEEccCCCCHHHHhhhcCCCCCC-CcE-EEEeCCCcccccCCCCeEE
Q 006122 279 ILVFLTGQDDIDATIQLLTEEARTSKKNSSGLIILPLYSGLSRAEQEQVFSPTPRG-KRK-VVISTNIAETSLTLEGIVY 356 (660)
Q Consensus 279 iLVF~~~~~~i~~l~~~L~~~~~~~~~~~~~~~v~~lh~~l~~~~r~~v~~~f~~g-~~~-vlvaT~i~e~Gidip~v~~ 356 (660)
+|||+.....++.+++.|.+.. +..+..+||+++.++|.++++.|++| ..+ +|+||+++++|+|+|++++
T Consensus 344 ~lvF~~~~~~~~~l~~~l~~~~--------~~~~~~~~g~~~~~~R~~~~~~F~~~~~~~vil~st~~~~~Glnl~~~~~ 415 (500)
T 1z63_A 344 IAIFTQFVDMGKIIRNIIEKEL--------NTEVPFLYGELSKKERDDIISKFQNNPSVKFIVLSVKAGGFGINLTSANR 415 (500)
T ss_dssp EEEECSCHHHHHHHHHHHHHHH--------TCCCCEEETTSCHHHHHHHHHHHHHCTTCCCCEEECCCC-CCCCCTTCSE
T ss_pred EEEEEehHHHHHHHHHHHHHhh--------CCCeEEEECCCCHHHHHHHHHHhcCCCCCCEEEEecccccCCCchhhCCE
Confidence 9999999999999999998753 56678899999999999999999888 454 8999999999999999999
Q ss_pred EEeCCCccceeecCCCCcccceeeecCHHhHHHhhcccCCC---CCcEEEEccChHHhhh
Q 006122 357 VVDSGFSKQRFYNPISDIENLVVAPISKASARQRAGRAGRV---RPGKCYRLYTEEYFVK 413 (660)
Q Consensus 357 VId~g~~k~~~~~~~~~~~~l~~~~~s~~~~~QR~GRaGR~---~~G~~~~l~~~~~~~~ 413 (660)
||.++. |.+.+.+.||+||++|. ++..+|+++.+...+.
T Consensus 416 vi~~d~------------------~~~~~~~~Q~~gR~~R~Gq~~~v~v~~lv~~~tiee 457 (500)
T 1z63_A 416 VIHFDR------------------WWNPAVEDQATDRVYRIGQTRNVIVHKLISVGTLEE 457 (500)
T ss_dssp EEESSC------------------CSCC---CHHHHTTTTTTTTSCEEEEEEEETTSHHH
T ss_pred EEEeCC------------------CCCcchHHHHHHHHHHcCCCCeeEEEEEEeCCCHHH
Confidence 999655 56667777999999998 4456788888765543
No 59
>3jux_A Protein translocase subunit SECA; protein translocation, ATPase, conformational change, peptide binding, ATP-binding, cell inner membrane; HET: ADP; 3.10A {Thermotoga maritima} PDB: 3din_A*
Probab=99.89 E-value=2e-21 Score=212.16 Aligned_cols=121 Identities=22% Similarity=0.239 Sum_probs=98.0
Q ss_pred HHHHHHHHHHHHHhcCCCCcEEEEcCCHHHHHHHHHHHHHHhhhccCCCCCeEEEEccCCCCHHHHhhhcCCCCCCCcEE
Q 006122 259 YVQAAVSTVLLIHDKEPPGDILVFLTGQDDIDATIQLLTEEARTSKKNSSGLIILPLYSGLSRAEQEQVFSPTPRGKRKV 338 (660)
Q Consensus 259 ~~~~~~~~~~~~~~~~~~~~iLVF~~~~~~i~~l~~~L~~~~~~~~~~~~~~~v~~lh~~l~~~~r~~v~~~f~~g~~~v 338 (660)
.....+..+...+. .+.++||||+|++.++.+++.|.+. ++....+||+....++..+.+.++.| .|
T Consensus 459 K~~al~~~I~~~~~--~gqpVLVFt~S~e~sE~Ls~~L~~~---------Gi~~~vLhgkq~~rE~~ii~~ag~~g--~V 525 (822)
T 3jux_A 459 KYEKIVEEIEKRYK--KGQPVLVGTTSIEKSELLSSMLKKK---------GIPHQVLNAKYHEKEAEIVAKAGQKG--MV 525 (822)
T ss_dssp HHHHHHHHHHHHHH--HTCCEEEEESSHHHHHHHHHHHHTT---------TCCCEEECSCHHHHHHHHHHHHHSTT--CE
T ss_pred HHHHHHHHHHHHhh--CCCCEEEEECCHHHHHHHHHHHHHC---------CCCEEEeeCCchHHHHHHHHhCCCCC--eE
Confidence 33344444444332 3567999999999999999999875 78889999997666666666666655 59
Q ss_pred EEeCCCcccccCCC--------CeEEEEeCCCccceeecCCCCcccceeeecCHHhHHHhhcccCCC-CCcEEEEccChH
Q 006122 339 VISTNIAETSLTLE--------GIVYVVDSGFSKQRFYNPISDIENLVVAPISKASARQRAGRAGRV-RPGKCYRLYTEE 409 (660)
Q Consensus 339 lvaT~i~e~Gidip--------~v~~VId~g~~k~~~~~~~~~~~~l~~~~~s~~~~~QR~GRaGR~-~~G~~~~l~~~~ 409 (660)
+||||+|++|+||+ +..+||++.+ |.|...|.||+||+||. .+|.++.+++.+
T Consensus 526 tVATdmAgRGtDI~lg~~V~~~GglhVInte~------------------Pes~r~y~qriGRTGRqG~~G~a~~fvsle 587 (822)
T 3jux_A 526 TIATNMAGRGTDIKLGPGVAELGGLCIIGTER------------------HESRRIDNQLRGRAGRQGDPGESIFFLSLE 587 (822)
T ss_dssp EEEETTTTTTCCCCCCTTTTTTTSCEEEESSC------------------CSSHHHHHHHHTTSSCSSCCCEEEEEEETT
T ss_pred EEEcchhhCCcCccCCcchhhcCCCEEEecCC------------------CCCHHHHHHhhCccccCCCCeeEEEEechh
Confidence 99999999999998 7779999888 89999999999999999 899998888754
Q ss_pred H
Q 006122 410 Y 410 (660)
Q Consensus 410 ~ 410 (660)
+
T Consensus 588 D 588 (822)
T 3jux_A 588 D 588 (822)
T ss_dssp S
T ss_pred H
Confidence 4
No 60
>2w00_A HSDR, R.ECOR124I; ATP-binding, DNA-binding, restriction system, helicase, HYDR R.ECOR124I, nucleotide-binding; HET: ATP; 2.6A {Escherichia coli} PDB: 2y3t_A* 2w74_B*
Probab=99.89 E-value=5.3e-22 Score=231.94 Aligned_cols=304 Identities=13% Similarity=0.062 Sum_probs=178.0
Q ss_pred CEEEEEcCCCCcHHHHHHHHHHhcc-ccCCCeEEEEeCchHHHHHHHHHHHHHHhCCeeeeEEeeeee-ccccCCCCCce
Q 006122 66 ATTIIVGETGSGKTTQIPQYLKEAG-WADGGRVIACTQPRRLAVQAVASRVAEEMGVKVGEEVGYTIR-FEDFTNKDLTA 143 (660)
Q Consensus 66 ~~vii~apTGsGKT~~ip~~l~~~~-~~~~~~~i~v~p~r~la~~~~~~~~~~~~~~~~~~~vg~~~~-~~~~~~~~~~~ 143 (660)
+..+++++||||||..+-.++.... .....++++++|.+.|+.|. .+.+.......+.. +.... ..........+
T Consensus 301 ~~gli~~~TGSGKT~t~~~l~~ll~~~~~~~rvLvlvpr~eL~~Q~-~~~f~~f~~~~v~~--~~s~~~l~~~L~~~~~~ 377 (1038)
T 2w00_A 301 SGGYIWHTTGSGKTLTSFKAARLATELDFIDKVFFVVDRKDLDYQT-MKEYQRFSPDSVNG--SENTAGLKRNLDKDDNK 377 (1038)
T ss_dssp GSEEEEECTTSSHHHHHHHHHHHHTTCTTCCEEEEEECGGGCCHHH-HHHHHTTSTTCSSS--SCCCHHHHHHHHCSSCC
T ss_pred CCEEEEecCCCCHHHHHHHHHHHHHhcCCCceEEEEeCcHHHHHHH-HHHHHHhccccccc--ccCHHHHHHHhcCCCCC
Confidence 5689999999999944322222111 11235789999999888764 33333322211110 11100 00011112689
Q ss_pred EEEechHHHHHHHhcCC---CCCCCcEEEEeCCCcCCcChhHHHHHHHHHHHhcCCceEEEeecccch-------HHHHH
Q 006122 144 IKFLTDGVLLREMMDDP---LLTKYSVIMVDEAHERSISTDILLGLLKKIQRCRSDLRLIISSATIEA-------KSMSA 213 (660)
Q Consensus 144 I~v~T~~~ll~~l~~~~---~l~~~~~iIiDE~Her~~~~d~ll~~l~~~~~~~~~~kii~~SAT~~~-------~~~~~ 213 (660)
|+|+|++.|...+.... .+..+.+||+|||| |+...+. .+.+....++.+++++|||+.. .....
T Consensus 378 IiVtTiqkl~~~l~~~~~~~~~~~~~lvIiDEAH-rs~~~~~----~~~I~~~~p~a~~lgfTATP~~~~~~~~~~~t~~ 452 (1038)
T 2w00_A 378 IIVTTIQKLNNLMKAESDLPVYNQQVVFIFDECH-RSQFGEA----QKNLKKKFKRYYQFGFTGTPIFPENALGSETTAS 452 (1038)
T ss_dssp EEEEEHHHHHHHHHHCCCCGGGGSCEEEEEESCC-TTHHHHH----HHHHHHHCSSEEEEEEESSCCCSTTCTTSCCHHH
T ss_pred EEEEEHHHHHHHHhcccchhccccccEEEEEccc-hhcchHH----HHHHHHhCCcccEEEEeCCccccccchhhhHHHH
Confidence 99999999998765432 35678999999999 6654332 3445555678899999999932 24556
Q ss_pred HhhcCCCCCCCcccccCCCCCCeEEEECCccccceEEecC------------C-------------CchhHHHHHHHHHH
Q 006122 214 FFHARKGRRGLEGVELVPRLEPAILSVEGRGFNVQIHYVE------------E-------------PVSDYVQAAVSTVL 268 (660)
Q Consensus 214 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~------------~-------------~~~~~~~~~~~~~~ 268 (660)
+|+............. .|...|+.+.|.. . ...+.+...+..++
T Consensus 453 ~FG~~i~~Y~l~~AI~-----------dg~l~p~~v~y~~v~~~~~~~~~e~d~~~~~~i~~~~~l~~~~ri~~I~~~Il 521 (1038)
T 2w00_A 453 VFGRELHSYVITDAIR-----------DEKVLKFKVDYNDVRPQFKSLETETDEKKLSAAENQQAFLHPMRIQEITQYIL 521 (1038)
T ss_dssp HHCSEEEEECHHHHHH-----------HTSSCCEEEEECCCCGGGHHHHTCCCHHHHHHTCSTTTTTCHHHHHHHHHHHH
T ss_pred HhCCeeEeecHHHHHh-----------CCCcCCeEEEEEeccchhhhccccccHHHHHHHHHHHHhcCHHHHHHHHHHHH
Confidence 6654211000000000 0111111111111 0 01112223333333
Q ss_pred HHH-hc-------CCCCcEEEEcCCHHHHHHHHHHHHHHhhhc---cCCCCCeEE-EEccCC----------C-------
Q 006122 269 LIH-DK-------EPPGDILVFLTGQDDIDATIQLLTEEARTS---KKNSSGLII-LPLYSG----------L------- 319 (660)
Q Consensus 269 ~~~-~~-------~~~~~iLVF~~~~~~i~~l~~~L~~~~~~~---~~~~~~~~v-~~lh~~----------l------- 319 (660)
... .. ..++++||||+++.++..+++.|.+..... .....++.+ ..+|++ +
T Consensus 522 ~~~~~~~~~~~~~~~g~kamVf~~S~~~A~~~~~~l~~~~~~~~~~~~~~~~~k~avv~s~~~~~~~~~~G~~~~e~~~~ 601 (1038)
T 2w00_A 522 NNFRQKTHRTFPGSKGFNAMLAVSSVDAAKAYYATFKRLQEEAANKSATYKPLRIATIFSFAANEEQNAIGEISDETFDT 601 (1038)
T ss_dssp HHHHHHTTCSSSSCCCCEEEEEESSHHHHHHHHHHHHHHHHHHTTTSSSCCCCCEEEECCCCC------CCCCCCCCSCG
T ss_pred HHHHHhhhhhcccCCCCcEEEEECCHHHHHHHHHHHHhhhhhhcccccccccCcEEEEEeCCCccccccccccccccccc
Confidence 221 11 134579999999999999999998765321 011122344 445542 2
Q ss_pred ---CH-----------------------------HHHhhhcCCCCCCCcEEEEeCCCcccccCCCCeEEEEeCCCcccee
Q 006122 320 ---SR-----------------------------AEQEQVFSPTPRGKRKVVISTNIAETSLTLEGIVYVVDSGFSKQRF 367 (660)
Q Consensus 320 ---~~-----------------------------~~r~~v~~~f~~g~~~vlvaT~i~e~Gidip~v~~VId~g~~k~~~ 367 (660)
++ .+|..+.+.|++|..+|||+|+++.+|+|+|.+. |+..+.
T Consensus 602 ~~~~~~~r~~l~~~I~dyn~~f~~~~~~~~~~~~~~R~~i~~~Fk~g~i~ILIvvd~lltGfDiP~l~-tlylDk----- 675 (1038)
T 2w00_A 602 SAMDSSAKEFLDAAIREYNSHFKTNFSTDSNGFQNYYRDLAQRVKNQDIDLLIVVGMFLTGFDAPTLN-TLFVDK----- 675 (1038)
T ss_dssp GGSCHHHHHHHHHHHHHHHHHHTCCCCSSHHHHHHHHHHHHHHHHTTSSSEEEESSTTSSSCCCTTEE-EEEEES-----
T ss_pred cccchhHHHHHHHHHHHHHHHhcccccccchhhhHHHHHHHHHHHcCCCeEEEEcchHHhCcCccccc-EEEEcc-----
Confidence 22 1367788899999999999999999999999995 454333
Q ss_pred ecCCCCcccceeeecCHHhHHHhhcccCCCCC-----cEEEEccC
Q 006122 368 YNPISDIENLVVAPISKASARQRAGRAGRVRP-----GKCYRLYT 407 (660)
Q Consensus 368 ~~~~~~~~~l~~~~~s~~~~~QR~GRaGR~~~-----G~~~~l~~ 407 (660)
|.+...++||+||+||..+ |..+.+..
T Consensus 676 -------------pl~~~~liQaIGRtnR~~~~~K~~G~IVdf~~ 707 (1038)
T 2w00_A 676 -------------NLRYHGLMQAFSRTNRIYDATKTFGNIVTFRD 707 (1038)
T ss_dssp -------------CCCHHHHHHHHHTTCCCCCTTCCSEEEEESSC
T ss_pred -------------CCCccceeehhhccCcCCCCCCCcEEEEEccc
Confidence 7788899999999999843 66666655
No 61
>1z3i_X Similar to RAD54-like; recombination ATPase helicase, recombination-DNA binding COM; 3.00A {Danio rerio} SCOP: c.37.1.19 c.37.1.19
Probab=99.85 E-value=1.1e-19 Score=205.77 Aligned_cols=113 Identities=14% Similarity=0.133 Sum_probs=99.3
Q ss_pred CCCCcEEEEcCCHHHHHHHHHHHHHHhhhccCCCCCeEEEEccCCCCHHHHhhhcCCCCCCCc---EEEEeCCCcccccC
Q 006122 274 EPPGDILVFLTGQDDIDATIQLLTEEARTSKKNSSGLIILPLYSGLSRAEQEQVFSPTPRGKR---KVVISTNIAETSLT 350 (660)
Q Consensus 274 ~~~~~iLVF~~~~~~i~~l~~~L~~~~~~~~~~~~~~~v~~lh~~l~~~~r~~v~~~f~~g~~---~vlvaT~i~e~Gid 350 (660)
..+.++|||+.....++.+...|... ++.+..+||+++.++|.++++.|.+|.. .+|++|.++++|+|
T Consensus 414 ~~~~k~lIFs~~~~~~~~l~~~l~~~---------g~~~~~l~G~~~~~~R~~~i~~F~~~~~~~~v~L~st~a~g~Gln 484 (644)
T 1z3i_X 414 TTSDKVVLVSNYTQTLDLFEKLCRNR---------RYLYVRLDGTMSIKKRAKIVERFNNPSSPEFIFMLSSKAGGCGLN 484 (644)
T ss_dssp HCCCEEEEEESCHHHHHHHHHHHHHH---------TCCEEEECSSCCHHHHHHHHHHHHSTTCCCCEEEEEGGGSCTTCC
T ss_pred cCCCEEEEEEccHHHHHHHHHHHHHC---------CCCEEEEeCCCCHHHHHHHHHHhcCCCCCcEEEEEecccccCCcc
Confidence 35678999999999999999998876 7788999999999999999999988754 58999999999999
Q ss_pred CCCeEEEEeCCCccceeecCCCCcccceeeecCHHhHHHhhcccCCC---CCcEEEEccChHHhhh
Q 006122 351 LEGIVYVVDSGFSKQRFYNPISDIENLVVAPISKASARQRAGRAGRV---RPGKCYRLYTEEYFVK 413 (660)
Q Consensus 351 ip~v~~VId~g~~k~~~~~~~~~~~~l~~~~~s~~~~~QR~GRaGR~---~~G~~~~l~~~~~~~~ 413 (660)
++++++||.++. |.+.+.+.|++||++|. ++..+|++++....+.
T Consensus 485 l~~a~~Vi~~d~------------------~wnp~~~~Qa~gR~~R~Gq~~~v~v~~lv~~~tiEe 532 (644)
T 1z3i_X 485 LIGANRLVMFDP------------------DWNPANDEQAMARVWRDGQKKTCYIYRLLSTGTIEE 532 (644)
T ss_dssp CTTEEEEEECSC------------------CSSHHHHHHHHTTSSSTTCCSCEEEEEEEETTSHHH
T ss_pred cccCCEEEEECC------------------CCCccHHHHHHHhhhhcCCCCceEEEEEEECCCHHH
Confidence 999999999666 78899999999999998 4567899988765554
No 62
>3mwy_W Chromo domain-containing protein 1; SWI2/SNF2 ATPase, double chromodomains, hydrolase; HET: ATG; 3.70A {Saccharomyces cerevisiae}
Probab=99.83 E-value=3.2e-20 Score=215.28 Aligned_cols=113 Identities=17% Similarity=0.128 Sum_probs=99.0
Q ss_pred CCCCcEEEEcCCHHHHHHHHHHHHHHhhhccCCCCCeEEEEccCCCCHHHHhhhcCCCCCCCc---EEEEeCCCcccccC
Q 006122 274 EPPGDILVFLTGQDDIDATIQLLTEEARTSKKNSSGLIILPLYSGLSRAEQEQVFSPTPRGKR---KVVISTNIAETSLT 350 (660)
Q Consensus 274 ~~~~~iLVF~~~~~~i~~l~~~L~~~~~~~~~~~~~~~v~~lh~~l~~~~r~~v~~~f~~g~~---~vlvaT~i~e~Gid 350 (660)
..+.++|||+.....++.+.+.|... ++.+..+||+++..+|.++++.|.+|.. .+|++|.+++.|||
T Consensus 570 ~~g~kvLIFsq~~~~ld~L~~~L~~~---------g~~~~~i~G~~~~~eR~~~i~~F~~~~~~~~v~LlSt~agg~GlN 640 (800)
T 3mwy_W 570 KDGHRVLIFSQMVRMLDILGDYLSIK---------GINFQRLDGTVPSAQRRISIDHFNSPDSNDFVFLLSTRAGGLGIN 640 (800)
T ss_dssp TTTCCEEEEESCHHHHHHHHHHHHHH---------TCCCEEESTTSCHHHHHHHHHTTSSTTCSCCCEEEEHHHHTTTCC
T ss_pred hCCCeEEEEechHHHHHHHHHHHHhC---------CCCEEEEeCCCCHHHHHHHHHHhhCCCCCceEEEEecccccCCCC
Confidence 35678999999999999999999876 7788999999999999999999988543 59999999999999
Q ss_pred CCCeEEEEeCCCccceeecCCCCcccceeeecCHHhHHHhhcccCCC---CCcEEEEccChHHhhh
Q 006122 351 LEGIVYVVDSGFSKQRFYNPISDIENLVVAPISKASARQRAGRAGRV---RPGKCYRLYTEEYFVK 413 (660)
Q Consensus 351 ip~v~~VId~g~~k~~~~~~~~~~~~l~~~~~s~~~~~QR~GRaGR~---~~G~~~~l~~~~~~~~ 413 (660)
++++++||.++. |.+.+.+.||.||++|. ++..+|+|+++...+.
T Consensus 641 L~~a~~VI~~D~------------------~wnp~~~~Qa~gR~~RiGQ~k~V~Vyrlv~~~TiEe 688 (800)
T 3mwy_W 641 LMTADTVVIFDS------------------DWNPQADLQAMARAHRIGQKNHVMVYRLVSKDTVEE 688 (800)
T ss_dssp CTTCCEEEESSC------------------CSCSHHHHHHHTTTSCSSCCSCEEEEEEEETTSHHH
T ss_pred ccccceEEEecC------------------CCChhhHHHHHHHHHhcCCCceEEEEEEecCCCHHH
Confidence 999999999655 66778888999999996 6678999999876655
No 63
>1qde_A EIF4A, translation initiation factor 4A; DEAD box protein family, gene regulation; 2.00A {Saccharomyces cerevisiae} SCOP: c.37.1.19 PDB: 1qva_A
Probab=99.83 E-value=5.5e-20 Score=180.48 Aligned_cols=180 Identities=16% Similarity=0.120 Sum_probs=121.4
Q ss_pred ccCCCCCCCccchHhHHHHhcCCCcHHHHHHHHHHHhcCCEEEEEcCCCCcHHHH--HHHHHHhccccCCCeEEEEeCch
Q 006122 27 SSLSSASSIGYGYASIEKQRQRLPVYKYRTAILYLVETHATTIIVGETGSGKTTQ--IPQYLKEAGWADGGRVIACTQPR 104 (660)
Q Consensus 27 ~~~~~~~~~~~~~~~~~~~~~~lPi~~~~~~i~~~l~~~~~vii~apTGsGKT~~--ip~~l~~~~~~~~~~~i~v~p~r 104 (660)
.+|.+++++......+.+. ..-..+++|.+++..+.+++++++.+|||||||.. +|.+........+.++++++|++
T Consensus 14 ~~f~~l~l~~~l~~~l~~~-g~~~~~~~Q~~~i~~~~~~~~~lv~~pTGsGKT~~~~~~~l~~l~~~~~~~~~lil~Pt~ 92 (224)
T 1qde_A 14 YKFDDMELDENLLRGVFGY-GFEEPSAIQQRAIMPIIEGHDVLAQAQSGTGKTGTFSIAALQRIDTSVKAPQALMLAPTR 92 (224)
T ss_dssp CCGGGGTCCHHHHHHHHHH-TCCSCCHHHHHHHHHHHTTCCEEEECCTTSSHHHHHHHHHHHHCCTTCCSCCEEEECSSH
T ss_pred CChhhcCCCHHHHHHHHHC-CCCCCcHHHHHHHHHHhcCCCEEEECCCCCcHHHHHHHHHHHHHhccCCCceEEEEECCH
Confidence 4699999998887777654 33456788888999999999999999999999954 34332222222345789999999
Q ss_pred HHHHHHHH--HHHHHHhCCeeeeEEeeeeeccccCCCCCceEEEechHHHHHHHhcCCC-CCCCcEEEEeCCCcCCcChh
Q 006122 105 RLAVQAVA--SRVAEEMGVKVGEEVGYTIRFEDFTNKDLTAIKFLTDGVLLREMMDDPL-LTKYSVIMVDEAHERSISTD 181 (660)
Q Consensus 105 ~la~~~~~--~~~~~~~~~~~~~~vg~~~~~~~~~~~~~~~I~v~T~~~ll~~l~~~~~-l~~~~~iIiDE~Her~~~~d 181 (660)
+++.|... +.+....+..++...|.....+.......++|+|+||+.+.+.+..... +.++++||+|||| +..+.+
T Consensus 93 ~L~~q~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~iiv~Tp~~l~~~~~~~~~~~~~~~~iViDEah-~~~~~~ 171 (224)
T 1qde_A 93 ELALQIQKVVMALAFHMDIKVHACIGGTSFVEDAEGLRDAQIVVGTPGRVFDNIQRRRFRTDKIKMFILDEAD-EMLSSG 171 (224)
T ss_dssp HHHHHHHHHHHHHTTTSCCCEEEECC----------CTTCSEEEECHHHHHHHHHTTSSCCTTCCEEEEETHH-HHHHTT
T ss_pred HHHHHHHHHHHHHhcccCceEEEEeCCcchHHHHhcCCCCCEEEECHHHHHHHHHhCCcchhhCcEEEEcChh-HHhhhh
Confidence 98876322 2233334666666666443322222222589999999999998876554 8899999999999 333333
Q ss_pred HHHHHHHHHHHhcCCceEEEeecccch
Q 006122 182 ILLGLLKKIQRCRSDLRLIISSATIEA 208 (660)
Q Consensus 182 ~ll~~l~~~~~~~~~~kii~~SAT~~~ 208 (660)
+...+.+.+....++.++++||||++.
T Consensus 172 ~~~~l~~i~~~~~~~~~~i~lSAT~~~ 198 (224)
T 1qde_A 172 FKEQIYQIFTLLPPTTQVVLLSATMPN 198 (224)
T ss_dssp CHHHHHHHHHHSCTTCEEEEEESSCCH
T ss_pred hHHHHHHHHHhCCccCeEEEEEeecCH
Confidence 444444444445678899999999954
No 64
>2hjv_A ATP-dependent RNA helicase DBPA; parallel alpha-beta, hydrolase; 1.95A {Bacillus subtilis}
Probab=99.82 E-value=3.2e-20 Score=172.50 Aligned_cols=135 Identities=19% Similarity=0.312 Sum_probs=113.4
Q ss_pred ceEEecCCCchhHHHHHHHHHHHHHhcCCCCcEEEEcCCHHHHHHHHHHHHHHhhhccCCCCCeEEEEccCCCCHHHHhh
Q 006122 247 VQIHYVEEPVSDYVQAAVSTVLLIHDKEPPGDILVFLTGQDDIDATIQLLTEEARTSKKNSSGLIILPLYSGLSRAEQEQ 326 (660)
Q Consensus 247 v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iLVF~~~~~~i~~l~~~L~~~~~~~~~~~~~~~v~~lh~~l~~~~r~~ 326 (660)
++.+|......+...... .+.....++++||||+++++++.+++.|.+. ++.+..+||+|++.+|..
T Consensus 10 i~~~~~~~~~~~K~~~L~----~ll~~~~~~~~lVF~~~~~~~~~l~~~L~~~---------~~~~~~~hg~~~~~~r~~ 76 (163)
T 2hjv_A 10 IEHAVIQVREENKFSLLK----DVLMTENPDSCIIFCRTKEHVNQLTDELDDL---------GYPCDKIHGGMIQEDRFD 76 (163)
T ss_dssp EEEEEEECCGGGHHHHHH----HHHHHHCCSSEEEECSSHHHHHHHHHHHHHT---------TCCEEEECTTSCHHHHHH
T ss_pred ceEEEEECChHHHHHHHH----HHHHhcCCCcEEEEECCHHHHHHHHHHHHHc---------CCcEEEEeCCCCHHHHHH
Confidence 455555544444333332 2233345678999999999999999999875 788999999999999999
Q ss_pred hcCCCCCCCcEEEEeCCCcccccCCCCeEEEEeCCCccceeecCCCCcccceeeecCHHhHHHhhcccCCC-CCcEEEEc
Q 006122 327 VFSPTPRGKRKVVISTNIAETSLTLEGIVYVVDSGFSKQRFYNPISDIENLVVAPISKASARQRAGRAGRV-RPGKCYRL 405 (660)
Q Consensus 327 v~~~f~~g~~~vlvaT~i~e~Gidip~v~~VId~g~~k~~~~~~~~~~~~l~~~~~s~~~~~QR~GRaGR~-~~G~~~~l 405 (660)
+++.|++|..+|||||+++++|+|+|++++||+++. |.+..+|.||+||+||. ++|.|+.+
T Consensus 77 ~~~~f~~g~~~vlv~T~~~~~Gld~~~~~~Vi~~~~------------------p~~~~~~~qr~GR~~R~g~~g~~~~~ 138 (163)
T 2hjv_A 77 VMNEFKRGEYRYLVATDVAARGIDIENISLVINYDL------------------PLEKESYVHRTGRTGRAGNKGKAISF 138 (163)
T ss_dssp HHHHHHTTSCSEEEECGGGTTTCCCSCCSEEEESSC------------------CSSHHHHHHHTTTSSCTTCCEEEEEE
T ss_pred HHHHHHcCCCeEEEECChhhcCCchhcCCEEEEeCC------------------CCCHHHHHHhccccCcCCCCceEEEE
Confidence 999999999999999999999999999999999877 88999999999999999 79999999
Q ss_pred cChHHhh
Q 006122 406 YTEEYFV 412 (660)
Q Consensus 406 ~~~~~~~ 412 (660)
+++.+..
T Consensus 139 ~~~~~~~ 145 (163)
T 2hjv_A 139 VTAFEKR 145 (163)
T ss_dssp ECGGGHH
T ss_pred ecHHHHH
Confidence 9876543
No 65
>2rb4_A ATP-dependent RNA helicase DDX25; rossmann fold, structural genomics, structural consortium, SGC, alternative initiation, ATP-binding, devel protein; 2.80A {Homo sapiens}
Probab=99.82 E-value=4.1e-20 Score=174.01 Aligned_cols=143 Identities=17% Similarity=0.248 Sum_probs=112.1
Q ss_pred cceEEecCCCchhHHHHHHHHHHHHHhcCCCCcEEEEcCCHHHHHHHHHHHHHHhhhccCCCCCeEEEEccCCCCHHHHh
Q 006122 246 NVQIHYVEEPVSDYVQAAVSTVLLIHDKEPPGDILVFLTGQDDIDATIQLLTEEARTSKKNSSGLIILPLYSGLSRAEQE 325 (660)
Q Consensus 246 ~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iLVF~~~~~~i~~l~~~L~~~~~~~~~~~~~~~v~~lh~~l~~~~r~ 325 (660)
.++.+|...+..+ .....+..+......+++||||++++.++.++..|.+. ++.+..+||++++.+|.
T Consensus 7 ~i~q~~~~~~~~~---~K~~~L~~ll~~~~~~~~lVF~~~~~~~~~l~~~L~~~---------~~~~~~~~g~~~~~~R~ 74 (175)
T 2rb4_A 7 NIRQYYVLCEHRK---DKYQALCNIYGSITIGQAIIFCQTRRNAKWLTVEMIQD---------GHQVSLLSGELTVEQRA 74 (175)
T ss_dssp CEEEEEEECSSHH---HHHHHHHHHHTTSCCSEEEEECSCHHHHHHHHHHHHTT---------TCCEEEECSSCCHHHHH
T ss_pred CceEEEEEcCChH---hHHHHHHHHHHhCCCCCEEEEECCHHHHHHHHHHHHHc---------CCcEEEEeCCCCHHHHH
Confidence 3455555544333 12334445555556789999999999999999999764 67899999999999999
Q ss_pred hhcCCCCCCCcEEEEeCCCcccccCCCCeEEEEeCCCccceeecCCCCcccceeeecCHHhHHHhhcccCCC-CCcEEEE
Q 006122 326 QVFSPTPRGKRKVVISTNIAETSLTLEGIVYVVDSGFSKQRFYNPISDIENLVVAPISKASARQRAGRAGRV-RPGKCYR 404 (660)
Q Consensus 326 ~v~~~f~~g~~~vlvaT~i~e~Gidip~v~~VId~g~~k~~~~~~~~~~~~l~~~~~s~~~~~QR~GRaGR~-~~G~~~~ 404 (660)
.+++.|++|..+|||||+++++|+|+|++++||+++.. ... ....+..+|.||+|||||. ++|.|+.
T Consensus 75 ~~~~~f~~g~~~vLvaT~~~~~Gid~~~~~~Vi~~d~p--------~~~----~~~~~~~~~~qr~GR~gR~g~~g~~~~ 142 (175)
T 2rb4_A 75 SIIQRFRDGKEKVLITTNVCARGIDVKQVTIVVNFDLP--------VKQ----GEEPDYETYLHRIGRTGRFGKKGLAFN 142 (175)
T ss_dssp HHHHHHHTTSCSEEEECCSCCTTTCCTTEEEEEESSCC--------C------CCSCCHHHHHHHHCBC----CCEEEEE
T ss_pred HHHHHHHcCCCeEEEEecchhcCCCcccCCEEEEeCCC--------CCc----cccCCHHHHHHHhcccccCCCCceEEE
Confidence 99999999999999999999999999999999997761 000 0027899999999999998 8899999
Q ss_pred ccChHHhh
Q 006122 405 LYTEEYFV 412 (660)
Q Consensus 405 l~~~~~~~ 412 (660)
++++.+..
T Consensus 143 ~~~~~~~~ 150 (175)
T 2rb4_A 143 MIEVDELP 150 (175)
T ss_dssp EECGGGHH
T ss_pred EEccchHH
Confidence 99976543
No 66
>1t5i_A C_terminal domain of A probable ATP-dependent RNA helicase; RECA-like fold, PRE-mRNA processing protein; 1.90A {Homo sapiens} SCOP: c.37.1.19
Probab=99.81 E-value=5e-20 Score=172.70 Aligned_cols=132 Identities=18% Similarity=0.300 Sum_probs=112.4
Q ss_pred ceEEecCCCchhHHHHHHHHHHHHHhcCCCCcEEEEcCCHHHHHHHHHHHHHHhhhccCCCCCeEEEEccCCCCHHHHhh
Q 006122 247 VQIHYVEEPVSDYVQAAVSTVLLIHDKEPPGDILVFLTGQDDIDATIQLLTEEARTSKKNSSGLIILPLYSGLSRAEQEQ 326 (660)
Q Consensus 247 v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iLVF~~~~~~i~~l~~~L~~~~~~~~~~~~~~~v~~lh~~l~~~~r~~ 326 (660)
++.+|......+... .+..+......+++||||++++.++.+++.|.+. ++.+..+||+|++.+|..
T Consensus 6 i~q~~~~~~~~~K~~----~L~~ll~~~~~~~~lVF~~~~~~~~~l~~~L~~~---------~~~~~~~hg~~~~~~r~~ 72 (172)
T 1t5i_A 6 LQQYYVKLKDNEKNR----KLFDLLDVLEFNQVVIFVKSVQRCIALAQLLVEQ---------NFPAIAIHRGMPQEERLS 72 (172)
T ss_dssp CEEEEEECCGGGHHH----HHHHHHHHSCCSSEEEECSSHHHHHHHHHHHHHT---------TCCEEEECTTSCHHHHHH
T ss_pred eEEEEEECChHHHHH----HHHHHHHhCCCCcEEEEECCHHHHHHHHHHHHhc---------CCCEEEEECCCCHHHHHH
Confidence 455555544444333 3333444456788999999999999999999875 778999999999999999
Q ss_pred hcCCCCCCCcEEEEeCCCcccccCCCCeEEEEeCCCccceeecCCCCcccceeeecCHHhHHHhhcccCCC-CCcEEEEc
Q 006122 327 VFSPTPRGKRKVVISTNIAETSLTLEGIVYVVDSGFSKQRFYNPISDIENLVVAPISKASARQRAGRAGRV-RPGKCYRL 405 (660)
Q Consensus 327 v~~~f~~g~~~vlvaT~i~e~Gidip~v~~VId~g~~k~~~~~~~~~~~~l~~~~~s~~~~~QR~GRaGR~-~~G~~~~l 405 (660)
+++.|++|..+|||||+++++|+|+|++++||+++. |.+..+|.||+||+||. ++|.++.+
T Consensus 73 ~~~~f~~g~~~vLvaT~~~~~Gldi~~~~~Vi~~d~------------------p~~~~~~~qr~GR~~R~g~~g~~~~~ 134 (172)
T 1t5i_A 73 RYQQFKDFQRRILVATNLFGRGMDIERVNIAFNYDM------------------PEDSDTYLHRVARAGRFGTKGLAITF 134 (172)
T ss_dssp HHHHHHTTSCSEEEESSCCSTTCCGGGCSEEEESSC------------------CSSHHHHHHHHHHHTGGGCCCEEEEE
T ss_pred HHHHHHCCCCcEEEECCchhcCcchhhCCEEEEECC------------------CCCHHHHHHHhcccccCCCCcEEEEE
Confidence 999999999999999999999999999999999777 88999999999999999 78999999
Q ss_pred cChH
Q 006122 406 YTEE 409 (660)
Q Consensus 406 ~~~~ 409 (660)
+++.
T Consensus 135 ~~~~ 138 (172)
T 1t5i_A 135 VSDE 138 (172)
T ss_dssp ECSH
T ss_pred EcCh
Confidence 9864
No 67
>1vec_A ATP-dependent RNA helicase P54; DEAD-box protein, RNA binding protein; HET: TLA; 2.01A {Homo sapiens} SCOP: c.37.1.19
Probab=99.81 E-value=1.9e-19 Score=174.22 Aligned_cols=179 Identities=18% Similarity=0.149 Sum_probs=122.1
Q ss_pred ccCCCCCCCccchHhHHHHhcCCCcHHHHHHHHHHHhcCCEEEEEcCCCCcHHH--HHHHHHHhccccCCCeEEEEeCch
Q 006122 27 SSLSSASSIGYGYASIEKQRQRLPVYKYRTAILYLVETHATTIIVGETGSGKTT--QIPQYLKEAGWADGGRVIACTQPR 104 (660)
Q Consensus 27 ~~~~~~~~~~~~~~~~~~~~~~lPi~~~~~~i~~~l~~~~~vii~apTGsGKT~--~ip~~l~~~~~~~~~~~i~v~p~r 104 (660)
.+|.+++++......+.+. .--..+++|.++++.+.+++++++.+|||||||. ++|.+........+.++++++|++
T Consensus 3 ~~f~~~~l~~~l~~~l~~~-g~~~~~~~Q~~~i~~~~~~~~~lv~apTGsGKT~~~~~~~~~~~~~~~~~~~~lil~Pt~ 81 (206)
T 1vec_A 3 NEFEDYCLKRELLMGIFEM-GWEKPSPIQEESIPIALSGRDILARAKNGTGKSGAYLIPLLERLDLKKDNIQAMVIVPTR 81 (206)
T ss_dssp SSGGGSCCCHHHHHHHHTT-TCCSCCHHHHHHHHHHHTTCCEEEECCSSSTTHHHHHHHHHHHCCTTSCSCCEEEECSCH
T ss_pred CChhhcCCCHHHHHHHHHC-CCCCCCHHHHHHHHHHccCCCEEEECCCCCchHHHHHHHHHHHhcccCCCeeEEEEeCcH
Confidence 4699999999888777553 3335678888899999999999999999999994 444433322222345689999999
Q ss_pred HHHHHHHHHHHHHHh----CCeeeeEEeeeeeccc-cCCCCCceEEEechHHHHHHHhcCCC-CCCCcEEEEeCCCcCCc
Q 006122 105 RLAVQAVASRVAEEM----GVKVGEEVGYTIRFED-FTNKDLTAIKFLTDGVLLREMMDDPL-LTKYSVIMVDEAHERSI 178 (660)
Q Consensus 105 ~la~~~~~~~~~~~~----~~~~~~~vg~~~~~~~-~~~~~~~~I~v~T~~~ll~~l~~~~~-l~~~~~iIiDE~Her~~ 178 (660)
+|+.| +.+.+.+.. +..++...|.....+. .......+|+|+||+.+.+.+..... +.++++||+||||. ..
T Consensus 82 ~L~~q-~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~i~v~T~~~l~~~~~~~~~~~~~~~~lViDEah~-~~ 159 (206)
T 1vec_A 82 ELALQ-VSQICIQVSKHMGGAKVMATTGGTNLRDDIMRLDDTVHVVIATPGRILDLIKKGVAKVDHVQMIVLDEADK-LL 159 (206)
T ss_dssp HHHHH-HHHHHHHHTTTSSSCCEEEECSSSCHHHHHHHTTSCCSEEEECHHHHHHHHHTTCSCCTTCCEEEEETHHH-HT
T ss_pred HHHHH-HHHHHHHHHhhcCCceEEEEeCCccHHHHHHhcCCCCCEEEeCHHHHHHHHHcCCcCcccCCEEEEEChHH-hH
Confidence 98876 333333332 4555555553221111 11122689999999999998876554 88999999999994 44
Q ss_pred ChhHHHHHHHHHHHhcCCceEEEeecccch
Q 006122 179 STDILLGLLKKIQRCRSDLRLIISSATIEA 208 (660)
Q Consensus 179 ~~d~ll~~l~~~~~~~~~~kii~~SAT~~~ 208 (660)
+.++...+.+.+....++.++++||||++.
T Consensus 160 ~~~~~~~l~~i~~~~~~~~~~l~~SAT~~~ 189 (206)
T 1vec_A 160 SQDFVQIMEDIILTLPKNRQILLYSATFPL 189 (206)
T ss_dssp STTTHHHHHHHHHHSCTTCEEEEEESCCCH
T ss_pred hhCcHHHHHHHHHhCCccceEEEEEeeCCH
Confidence 444444433334445558999999999954
No 68
>3ber_A Probable ATP-dependent RNA helicase DDX47; DEAD, AMP, structural genomics, structural GEN consortium, SGC, ATP-binding, hydrolase; HET: AMP PGE; 1.40A {Homo sapiens}
Probab=99.81 E-value=8.4e-20 Score=182.10 Aligned_cols=188 Identities=19% Similarity=0.144 Sum_probs=130.5
Q ss_pred ccccCCCCCCCccchHhHHHHhcCCCcHHHHHHHHHHHhcCCEEEEEcCCCCcHHHHHHHHHHhc--cccCCCeEEEEeC
Q 006122 25 LSSSLSSASSIGYGYASIEKQRQRLPVYKYRTAILYLVETHATTIIVGETGSGKTTQIPQYLKEA--GWADGGRVIACTQ 102 (660)
Q Consensus 25 ~~~~~~~~~~~~~~~~~~~~~~~~lPi~~~~~~i~~~l~~~~~vii~apTGsGKT~~ip~~l~~~--~~~~~~~~i~v~p 102 (660)
...+|.+++++......+.+ ......+.+|.+++..+.++++++++||||||||......+... ....+.++++++|
T Consensus 41 ~~~~f~~l~l~~~l~~~l~~-~g~~~~~~~Q~~~i~~i~~~~~~lv~a~TGsGKT~~~~~~il~~l~~~~~~~~~lil~P 119 (249)
T 3ber_A 41 ETKTFKDLGVTDVLCEACDQ-LGWTKPTKIQIEAIPLALQGRDIIGLAETGSGKTGAFALPILNALLETPQRLFALVLTP 119 (249)
T ss_dssp HHCCTGGGTCCHHHHHHHHH-TTCCSCCHHHHHHHHHHHTTCCEEEECCTTSCHHHHHHHHHHHHHHHSCCSSCEEEECS
T ss_pred ccCCHHHcCCCHHHHHHHHH-cCCCCCCHHHHHHHHHHhCCCCEEEEcCCCCCchhHhHHHHHHHHhcCCCCceEEEEeC
Confidence 34579999999887766644 34446788889999999999999999999999995543333322 1123456899999
Q ss_pred chHHHHHHH--HHHHHHHhCCeeeeEEeeeeecc--ccCCCCCceEEEechHHHHHHHhcCC--CCCCCcEEEEeCCCcC
Q 006122 103 PRRLAVQAV--ASRVAEEMGVKVGEEVGYTIRFE--DFTNKDLTAIKFLTDGVLLREMMDDP--LLTKYSVIMVDEAHER 176 (660)
Q Consensus 103 ~r~la~~~~--~~~~~~~~~~~~~~~vg~~~~~~--~~~~~~~~~I~v~T~~~ll~~l~~~~--~l~~~~~iIiDE~Her 176 (660)
+|+|+.|.. .+++....+..++..+|...... ..... .++|+|+||+++.+.+.... .+.++++||+|||| +
T Consensus 120 tr~L~~q~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~-~~~I~v~Tp~~l~~~l~~~~~~~l~~~~~lViDEah-~ 197 (249)
T 3ber_A 120 TRELAFQISEQFEALGSSIGVQSAVIVGGIDSMSQSLALAK-KPHIIIATPGRLIDHLENTKGFNLRALKYLVMDEAD-R 197 (249)
T ss_dssp SHHHHHHHHHHHHHHHGGGTCCEEEECTTSCHHHHHHHHHT-CCSEEEECHHHHHHHHHHSTTCCCTTCCEEEECSHH-H
T ss_pred CHHHHHHHHHHHHHHhccCCeeEEEEECCCChHHHHHHhcC-CCCEEEECHHHHHHHHHcCCCcCccccCEEEEcChh-h
Confidence 999887733 33444445777776666322111 11123 68999999999999886533 48899999999999 5
Q ss_pred CcChhHHHHHHHHHHHhcCCceEEEeecccch--HHHHHHh
Q 006122 177 SISTDILLGLLKKIQRCRSDLRLIISSATIEA--KSMSAFF 215 (660)
Q Consensus 177 ~~~~d~ll~~l~~~~~~~~~~kii~~SAT~~~--~~~~~~~ 215 (660)
..+.++...+.+.+...+++.++++||||++. ..+.+.+
T Consensus 198 l~~~~~~~~l~~i~~~~~~~~~~l~~SAT~~~~v~~~~~~~ 238 (249)
T 3ber_A 198 ILNMDFETEVDKILKVIPRDRKTFLFSATMTKKVQKLQRAA 238 (249)
T ss_dssp HHHTTCHHHHHHHHHSSCSSSEEEEEESSCCHHHHHHHHHH
T ss_pred hhccChHHHHHHHHHhCCCCCeEEEEeccCCHHHHHHHHHH
Confidence 55555555555555556668999999999954 3444443
No 69
>1q0u_A Bstdead; DEAD protein, RNA binding protein; 1.85A {Geobacillus stearothermophilus} SCOP: c.37.1.19
Probab=99.81 E-value=3.1e-19 Score=174.52 Aligned_cols=180 Identities=17% Similarity=0.133 Sum_probs=120.5
Q ss_pred ccCCCCCCCccchHhHHHHhcCCCcHHHHHHHHHHHhcCCEEEEEcCCCCcHHHH--HHHHHHhccccCCCeEEEEeCch
Q 006122 27 SSLSSASSIGYGYASIEKQRQRLPVYKYRTAILYLVETHATTIIVGETGSGKTTQ--IPQYLKEAGWADGGRVIACTQPR 104 (660)
Q Consensus 27 ~~~~~~~~~~~~~~~~~~~~~~lPi~~~~~~i~~~l~~~~~vii~apTGsGKT~~--ip~~l~~~~~~~~~~~i~v~p~r 104 (660)
.+|.++++++.....+.+. .....+++|.++++.+.+++++++++|||||||.. +|.+........+.++++++|++
T Consensus 4 ~~f~~~~l~~~l~~~l~~~-g~~~~~~~Q~~~i~~~~~~~~~lv~a~TGsGKT~~~~~~~l~~l~~~~~~~~~lil~Pt~ 82 (219)
T 1q0u_A 4 TQFTRFPFQPFIIEAIKTL-RFYKPTEIQERIIPGALRGESMVGQSQTGTGKTHAYLLPIMEKIKPERAEVQAVITAPTR 82 (219)
T ss_dssp CCGGGSCCCHHHHHHHHHT-TCCSCCHHHHHHHHHHHHTCCEEEECCSSHHHHHHHHHHHHHHCCTTSCSCCEEEECSSH
T ss_pred CCHhhCCCCHHHHHHHHHC-CCCCCCHHHHHHHHHHhCCCCEEEECCCCChHHHHHHHHHHHHHHhCcCCceEEEEcCcH
Confidence 3589999998887777554 33456788888899998999999999999999954 44333222222345789999999
Q ss_pred HHHHHHHHH--HHHHHh----CCeeeeEEeeeeeccc-cCCCCCceEEEechHHHHHHHhcCCC-CCCCcEEEEeCCCcC
Q 006122 105 RLAVQAVAS--RVAEEM----GVKVGEEVGYTIRFED-FTNKDLTAIKFLTDGVLLREMMDDPL-LTKYSVIMVDEAHER 176 (660)
Q Consensus 105 ~la~~~~~~--~~~~~~----~~~~~~~vg~~~~~~~-~~~~~~~~I~v~T~~~ll~~l~~~~~-l~~~~~iIiDE~Her 176 (660)
+|+.|.... .+.... +..++...|.....+. .......+|+|+||+.+.+.+..... +.++++||+||||.
T Consensus 83 ~L~~q~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~Iiv~Tp~~l~~~l~~~~~~~~~~~~lViDEah~- 161 (219)
T 1q0u_A 83 ELATQIYHETLKITKFCPKDRMIVARCLIGGTDKQKALEKLNVQPHIVIGTPGRINDFIREQALDVHTAHILVVDEADL- 161 (219)
T ss_dssp HHHHHHHHHHHHHHTTSCGGGCCCEEEECCCSHHHHTTCCCSSCCSEEEECHHHHHHHHHTTCCCGGGCCEEEECSHHH-
T ss_pred HHHHHHHHHHHHHhhhcccccceEEEEEeCCCCHHHHHHHcCCCCCEEEeCHHHHHHHHHcCCCCcCcceEEEEcCchH-
Confidence 998764322 222222 4555555553322111 11112679999999999998876554 78999999999993
Q ss_pred CcChhHHHHHHHHHHHhcCCceEEEeecccch
Q 006122 177 SISTDILLGLLKKIQRCRSDLRLIISSATIEA 208 (660)
Q Consensus 177 ~~~~d~ll~~l~~~~~~~~~~kii~~SAT~~~ 208 (660)
..+.++...+.+.+....++.+++++|||++.
T Consensus 162 ~~~~~~~~~l~~i~~~~~~~~~~l~~SAT~~~ 193 (219)
T 1q0u_A 162 MLDMGFITDVDQIAARMPKDLQMLVFSATIPE 193 (219)
T ss_dssp HHHTTCHHHHHHHHHTSCTTCEEEEEESCCCG
T ss_pred HhhhChHHHHHHHHHhCCcccEEEEEecCCCH
Confidence 33333333333333345567899999999943
No 70
>3bor_A Human initiation factor 4A-II; translation initiation, DEAD BOX, structural genomics, helic binding, HOST-virus interaction, hydrolase; 1.85A {Homo sapiens} PDB: 2g9n_A*
Probab=99.80 E-value=3.2e-19 Score=176.58 Aligned_cols=179 Identities=15% Similarity=0.119 Sum_probs=118.8
Q ss_pred ccCCCCCCCccchHhHHHHhcCCCcHHHHHHHHHHHhcCCEEEEEcCCCCcHHHHHHHHHHhccc--cCCCeEEEEeCch
Q 006122 27 SSLSSASSIGYGYASIEKQRQRLPVYKYRTAILYLVETHATTIIVGETGSGKTTQIPQYLKEAGW--ADGGRVIACTQPR 104 (660)
Q Consensus 27 ~~~~~~~~~~~~~~~~~~~~~~lPi~~~~~~i~~~l~~~~~vii~apTGsGKT~~ip~~l~~~~~--~~~~~~i~v~p~r 104 (660)
.+|.+++++......+.+.... ..+++|.+++..+.++++++++||||||||......+..... ..+.++++++|++
T Consensus 30 ~~f~~l~l~~~l~~~l~~~g~~-~~~~~Q~~ai~~i~~~~~~li~apTGsGKT~~~~l~~l~~l~~~~~~~~~lil~Pt~ 108 (237)
T 3bor_A 30 DNFDDMNLKESLLRGIYAYGFE-KPSAIQQRAIIPCIKGYDVIAQAQSGTGKTATFAISILQQLEIEFKETQALVLAPTR 108 (237)
T ss_dssp CSGGGSCCCHHHHHHHHHHTCC-SCCHHHHHHHHHHHTTCCEEECCCSSHHHHHHHHHHHHHHCCTTSCSCCEEEECSSH
T ss_pred CChhhcCCCHHHHHHHHHCCCC-CCCHHHHHHHHHHhCCCCEEEECCCCCcHHHHHHHHHHHHHHhcCCCceEEEEECcH
Confidence 5699999999888777654333 356778888888888889999999999999544333333221 2345789999999
Q ss_pred HHHHHHHHHHHHH---HhCCeeeeEEeeeeecccc--CCCCCceEEEechHHHHHHHhcCCC-CCCCcEEEEeCCCcCCc
Q 006122 105 RLAVQAVASRVAE---EMGVKVGEEVGYTIRFEDF--TNKDLTAIKFLTDGVLLREMMDDPL-LTKYSVIMVDEAHERSI 178 (660)
Q Consensus 105 ~la~~~~~~~~~~---~~~~~~~~~vg~~~~~~~~--~~~~~~~I~v~T~~~ll~~l~~~~~-l~~~~~iIiDE~Her~~ 178 (660)
+|+.|. .+.+.+ ..+..+....|........ ......+|+|+||+.+.+.+..... +.++++||+||||. ..
T Consensus 109 ~L~~q~-~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~l~~~~~~Ilv~Tp~~l~~~l~~~~~~~~~~~~lViDEah~-~~ 186 (237)
T 3bor_A 109 ELAQQI-QKVILALGDYMGATCHACIGGTNVRNEMQKLQAEAPHIVVGTPGRVFDMLNRRYLSPKWIKMFVLDEADE-ML 186 (237)
T ss_dssp HHHHHH-HHHHHHHTTTTTCCEEEECC-------------CCCSEEEECHHHHHHHHHTTSSCSTTCCEEEEESHHH-HH
T ss_pred HHHHHH-HHHHHHHhhhcCceEEEEECCCchHHHHHHHhcCCCCEEEECHHHHHHHHHhCCcCcccCcEEEECCchH-hh
Confidence 998763 333333 3345555555532211111 1121479999999999998876544 88899999999993 33
Q ss_pred ChhHHHHHHHHHHHhcCCceEEEeecccch
Q 006122 179 STDILLGLLKKIQRCRSDLRLIISSATIEA 208 (660)
Q Consensus 179 ~~d~ll~~l~~~~~~~~~~kii~~SAT~~~ 208 (660)
+.++...+.+.+....++.+++++|||++.
T Consensus 187 ~~~~~~~l~~i~~~~~~~~~~i~~SAT~~~ 216 (237)
T 3bor_A 187 SRGFKDQIYEIFQKLNTSIQVVLLSATMPT 216 (237)
T ss_dssp HTTCHHHHHHHHHHSCTTCEEEEECSSCCH
T ss_pred ccCcHHHHHHHHHhCCCCCeEEEEEEecCH
Confidence 333333334444445678999999999954
No 71
>1fuk_A Eukaryotic initiation factor 4A; helicase, DEAD-box protein, translation; 1.75A {Saccharomyces cerevisiae} SCOP: c.37.1.19
Probab=99.80 E-value=4.1e-20 Score=172.19 Aligned_cols=115 Identities=20% Similarity=0.415 Sum_probs=100.6
Q ss_pred HHhcCCCCcEEEEcCCHHHHHHHHHHHHHHhhhccCCCCCeEEEEccCCCCHHHHhhhcCCCCCCCcEEEEeCCCccccc
Q 006122 270 IHDKEPPGDILVFLTGQDDIDATIQLLTEEARTSKKNSSGLIILPLYSGLSRAEQEQVFSPTPRGKRKVVISTNIAETSL 349 (660)
Q Consensus 270 ~~~~~~~~~iLVF~~~~~~i~~l~~~L~~~~~~~~~~~~~~~v~~lh~~l~~~~r~~v~~~f~~g~~~vlvaT~i~e~Gi 349 (660)
+......+++||||++++.++.+++.|.+. ++.+..+||++++.+|..+++.|++|..+|||||+++++|+
T Consensus 24 ll~~~~~~~~lVF~~~~~~~~~l~~~L~~~---------~~~~~~~~~~~~~~~r~~~~~~f~~g~~~vlv~T~~~~~G~ 94 (165)
T 1fuk_A 24 LYDSISVTQAVIFCNTRRKVEELTTKLRND---------KFTVSAIYSDLPQQERDTIMKEFRSGSSRILISTDLLARGI 94 (165)
T ss_dssp HHHHTTCSCEEEEESSHHHHHHHHHHHHHT---------TCCEEEECTTSCHHHHHHHHHHHHTTSCSEEEEEGGGTTTC
T ss_pred HHHhCCCCCEEEEECCHHHHHHHHHHHHHc---------CCCEEEEECCCCHHHHHHHHHHHHcCCCEEEEEcChhhcCC
Confidence 333446788999999999999999999875 67899999999999999999999999999999999999999
Q ss_pred CCCCeEEEEeCCCccceeecCCCCcccceeeecCHHhHHHhhcccCCC-CCcEEEEccChHHh
Q 006122 350 TLEGIVYVVDSGFSKQRFYNPISDIENLVVAPISKASARQRAGRAGRV-RPGKCYRLYTEEYF 411 (660)
Q Consensus 350 dip~v~~VId~g~~k~~~~~~~~~~~~l~~~~~s~~~~~QR~GRaGR~-~~G~~~~l~~~~~~ 411 (660)
|+|++++||+++. |.+..+|.||+||+||. ++|.|+.++++.+.
T Consensus 95 d~~~~~~Vi~~~~------------------p~~~~~~~qr~GR~gR~g~~g~~~~~~~~~~~ 139 (165)
T 1fuk_A 95 DVQQVSLVINYDL------------------PANKENYIHRIGRGGRFGRKGVAINFVTNEDV 139 (165)
T ss_dssp CCCSCSEEEESSC------------------CSSGGGGGGSSCSCC-----CEEEEEEETTTH
T ss_pred CcccCCEEEEeCC------------------CCCHHHHHHHhcccccCCCCceEEEEEcchHH
Confidence 9999999999777 77888999999999999 78999999987654
No 72
>3fe2_A Probable ATP-dependent RNA helicase DDX5; DEAD, ADP, ATP-binding, hydrolase, nucleotide- RNA-binding, methylation, mRNA processing, mRNA S nucleus; HET: ADP; 2.60A {Homo sapiens} PDB: 4a4d_A
Probab=99.80 E-value=1.9e-19 Score=178.95 Aligned_cols=188 Identities=20% Similarity=0.157 Sum_probs=129.6
Q ss_pred ccCCCCCCCccchHhHHHHhcCCCcHHHHHHHHHHHhcCCEEEEEcCCCCcHH--HHHHHHHHhcc-----ccCCCeEEE
Q 006122 27 SSLSSASSIGYGYASIEKQRQRLPVYKYRTAILYLVETHATTIIVGETGSGKT--TQIPQYLKEAG-----WADGGRVIA 99 (660)
Q Consensus 27 ~~~~~~~~~~~~~~~~~~~~~~lPi~~~~~~i~~~l~~~~~vii~apTGsGKT--~~ip~~l~~~~-----~~~~~~~i~ 99 (660)
.+|.+++++......+.+.... ..+++|.+++..+.++++++++|||||||| +++|.+..... ...+.++++
T Consensus 29 ~~f~~~~l~~~l~~~l~~~g~~-~~~~~Q~~~i~~~~~g~~~l~~apTGsGKT~~~~l~~l~~l~~~~~~~~~~~~~~li 107 (242)
T 3fe2_A 29 LNFYEANFPANVMDVIARQNFT-EPTAIQAQGWPVALSGLDMVGVAQTGSGKTLSYLLPAIVHINHQPFLERGDGPICLV 107 (242)
T ss_dssp SSTTTTTCCHHHHHHHHTTTCC-SCCHHHHHHHHHHHHTCCEEEEECTTSCHHHHHHHHHHHHHHTSCCCCTTCCCSEEE
T ss_pred CCHhhcCCCHHHHHHHHHCCCC-CCCHHHHHHHHHHhCCCCEEEECCCcCHHHHHHHHHHHHHHHhccccccCCCCEEEE
Confidence 4689999998887777654333 356788888888889999999999999999 45554433221 123556899
Q ss_pred EeCchHHHHH--HHHHHHHHHhCCeeeeEEeeeeecccc-CCCCCceEEEechHHHHHHHhcCCC-CCCCcEEEEeCCCc
Q 006122 100 CTQPRRLAVQ--AVASRVAEEMGVKVGEEVGYTIRFEDF-TNKDLTAIKFLTDGVLLREMMDDPL-LTKYSVIMVDEAHE 175 (660)
Q Consensus 100 v~p~r~la~~--~~~~~~~~~~~~~~~~~vg~~~~~~~~-~~~~~~~I~v~T~~~ll~~l~~~~~-l~~~~~iIiDE~He 175 (660)
++|+|+|+.| ...+.+....+..++...|........ ......+|+|+||++|.+.+..... +.++++||+||||
T Consensus 108 l~Pt~~L~~Q~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~I~v~Tp~~l~~~l~~~~~~~~~~~~lViDEah- 186 (242)
T 3fe2_A 108 LAPTRELAQQVQQVAAEYCRACRLKSTCIYGGAPKGPQIRDLERGVEICIATPGRLIDFLECGKTNLRRTTYLVLDEAD- 186 (242)
T ss_dssp ECSSHHHHHHHHHHHHHHHHHTTCCEEEECTTSCHHHHHHHHHHCCSEEEECHHHHHHHHHHTSCCCTTCCEEEETTHH-
T ss_pred EeCcHHHHHHHHHHHHHHHhhcCceEEEEECCCChHHHHHHhcCCCCEEEECHHHHHHHHHcCCCCcccccEEEEeCHH-
Confidence 9999999987 334455566677777666633221111 1111479999999999998876654 8999999999999
Q ss_pred CCcChhHHHHHHHHHHHhcCCceEEEeecccch--HHHHHHhh
Q 006122 176 RSISTDILLGLLKKIQRCRSDLRLIISSATIEA--KSMSAFFH 216 (660)
Q Consensus 176 r~~~~d~ll~~l~~~~~~~~~~kii~~SAT~~~--~~~~~~~~ 216 (660)
+..+.++...+.+.+...+++.++++||||++. ..+.+.+.
T Consensus 187 ~l~~~~~~~~~~~i~~~~~~~~q~~~~SAT~~~~~~~~~~~~l 229 (242)
T 3fe2_A 187 RMLDMGFEPQIRKIVDQIRPDRQTLMWSATWPKEVRQLAEDFL 229 (242)
T ss_dssp HHHHTTCHHHHHHHHTTSCSSCEEEEEESCCCHHHHHHHHHHC
T ss_pred HHhhhCcHHHHHHHHHhCCccceEEEEEeecCHHHHHHHHHHC
Confidence 444444444444444455678999999999953 44544443
No 73
>2pl3_A Probable ATP-dependent RNA helicase DDX10; DEAD, structural genomics, structural genomic consortium, SGC, hydrolase; HET: ADP; 2.15A {Homo sapiens}
Probab=99.80 E-value=2.7e-19 Score=177.05 Aligned_cols=186 Identities=19% Similarity=0.156 Sum_probs=125.0
Q ss_pred cccCCCCCCCccchHhHHHHhcCCCcHHHHHHHHHHHhcCCEEEEEcCCCCcHHH--HHHHHHH--hc--cccCCCeEEE
Q 006122 26 SSSLSSASSIGYGYASIEKQRQRLPVYKYRTAILYLVETHATTIIVGETGSGKTT--QIPQYLK--EA--GWADGGRVIA 99 (660)
Q Consensus 26 ~~~~~~~~~~~~~~~~~~~~~~~lPi~~~~~~i~~~l~~~~~vii~apTGsGKT~--~ip~~l~--~~--~~~~~~~~i~ 99 (660)
..+|.+++++......+.+. ..-..+++|.+++..+.+++++++++|||||||+ ++|.+.. .. ....+.++++
T Consensus 24 ~~~f~~~~l~~~l~~~l~~~-~~~~~~~~Q~~~i~~~~~~~~~li~a~TGsGKT~~~~~~~l~~l~~~~~~~~~~~~~li 102 (236)
T 2pl3_A 24 ITRFSDFPLSKKTLKGLQEA-QYRLVTEIQKQTIGLALQGKDVLGAAKTGSGKTLAFLVPVLEALYRLQWTSTDGLGVLI 102 (236)
T ss_dssp CSBGGGSCCCHHHHHHHHHT-TCCBCCHHHHHHHHHHHTTCCEEEECCTTSCHHHHHHHHHHHHHHHTTCCGGGCCCEEE
T ss_pred cCCHhhcCCCHHHHHHHHHC-CCCCCCHHHHHHHHHHhCCCCEEEEeCCCCcHHHHHHHHHHHHHHhhcccccCCceEEE
Confidence 34699999999888776543 4445678888999999999999999999999994 4443321 11 1123456899
Q ss_pred EeCchHHHHHHHHHHHHH---HhCCeeeeEEeeeeeccc-cCCCCCceEEEechHHHHHHHhcC--CCCCCCcEEEEeCC
Q 006122 100 CTQPRRLAVQAVASRVAE---EMGVKVGEEVGYTIRFED-FTNKDLTAIKFLTDGVLLREMMDD--PLLTKYSVIMVDEA 173 (660)
Q Consensus 100 v~p~r~la~~~~~~~~~~---~~~~~~~~~vg~~~~~~~-~~~~~~~~I~v~T~~~ll~~l~~~--~~l~~~~~iIiDE~ 173 (660)
++|+++|+.|.. +.+.+ ..+..++...|....... .... ..+|+|+||+.+.+.+... ..+.++++||+|||
T Consensus 103 l~Pt~~L~~q~~-~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~-~~~iiv~Tp~~l~~~l~~~~~~~~~~~~~lViDEa 180 (236)
T 2pl3_A 103 ISPTRELAYQTF-EVLRKVGKNHDFSAGLIIGGKDLKHEAERIN-NINILVCTPGRLLQHMDETVSFHATDLQMLVLDEA 180 (236)
T ss_dssp ECSSHHHHHHHH-HHHHHHTTTSSCCEEEECCC--CHHHHHHHT-TCSEEEECHHHHHHHHHHCSSCCCTTCCEEEETTH
T ss_pred EeCCHHHHHHHH-HHHHHHhCCCCeeEEEEECCCCHHHHHHhCC-CCCEEEECHHHHHHHHHhcCCcccccccEEEEeCh
Confidence 999999987743 33333 234566665553322111 1112 6899999999999988654 34789999999999
Q ss_pred CcCCcChhHHHHHHHHHHHhcCCceEEEeecccch--HHHHHHh
Q 006122 174 HERSISTDILLGLLKKIQRCRSDLRLIISSATIEA--KSMSAFF 215 (660)
Q Consensus 174 Her~~~~d~ll~~l~~~~~~~~~~kii~~SAT~~~--~~~~~~~ 215 (660)
| +..+.++...+.+.+....++.++++||||++. ..+.+.+
T Consensus 181 h-~~~~~~~~~~~~~i~~~~~~~~~~l~~SAT~~~~~~~~~~~~ 223 (236)
T 2pl3_A 181 D-RILDMGFADTMNAVIENLPKKRQTLLFSATQTKSVKDLARLS 223 (236)
T ss_dssp H-HHHHTTTHHHHHHHHHTSCTTSEEEEEESSCCHHHHHHHHHS
T ss_pred H-HHhcCCcHHHHHHHHHhCCCCCeEEEEEeeCCHHHHHHHHHh
Confidence 9 444444444444444445568899999999944 4444443
No 74
>2jgn_A DBX, DDX3, ATP-dependent RNA helicase DDX3X; phosphorylation, nucleotide-binding, hydrolase, RNA-binding, ATP-binding, DNA-binding, nuclear protein; 1.91A {Homo sapiens}
Probab=99.79 E-value=1.3e-19 Score=171.88 Aligned_cols=137 Identities=20% Similarity=0.280 Sum_probs=99.4
Q ss_pred cceEEecCCCchhHHHHHHHHHHHHHhcCCCCcEEEEcCCHHHHHHHHHHHHHHhhhccCCCCCeEEEEccCCCCHHHHh
Q 006122 246 NVQIHYVEEPVSDYVQAAVSTVLLIHDKEPPGDILVFLTGQDDIDATIQLLTEEARTSKKNSSGLIILPLYSGLSRAEQE 325 (660)
Q Consensus 246 ~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iLVF~~~~~~i~~l~~~L~~~~~~~~~~~~~~~v~~lh~~l~~~~r~ 325 (660)
.++..|...+..+........+.. ...++++||||++++.++.+++.|... ++.+..+||++++.+|.
T Consensus 19 ~i~q~~~~v~~~~K~~~L~~ll~~---~~~~~k~lVF~~~~~~~~~l~~~L~~~---------g~~~~~lhg~~~~~~r~ 86 (185)
T 2jgn_A 19 NITQKVVWVEESDKRSFLLDLLNA---TGKDSLTLVFVETKKGADSLEDFLYHE---------GYACTSIHGDRSQRDRE 86 (185)
T ss_dssp TEEEEEEECCGGGHHHHHHHHHHH---C-CCSCEEEEESCHHHHHHHHHHHHHT---------TCCEEEEC--------C
T ss_pred CceEEEEEeCcHHHHHHHHHHHHh---cCCCCeEEEEECCHHHHHHHHHHHHHc---------CCceEEEeCCCCHHHHH
Confidence 455555554444433333332221 225678999999999999999999875 78899999999999999
Q ss_pred hhcCCCCCCCcEEEEeCCCcccccCCCCeEEEEeCCCccceeecCCCCcccceeeecCHHhHHHhhcccCCC-CCcEEEE
Q 006122 326 QVFSPTPRGKRKVVISTNIAETSLTLEGIVYVVDSGFSKQRFYNPISDIENLVVAPISKASARQRAGRAGRV-RPGKCYR 404 (660)
Q Consensus 326 ~v~~~f~~g~~~vlvaT~i~e~Gidip~v~~VId~g~~k~~~~~~~~~~~~l~~~~~s~~~~~QR~GRaGR~-~~G~~~~ 404 (660)
.+++.|++|..+|||||+++++|+|+|++++||+++. |.+..+|.||+||+||. ++|.|+.
T Consensus 87 ~~~~~f~~g~~~vLvaT~~~~~Gldi~~~~~VI~~d~------------------p~s~~~~~Qr~GR~~R~g~~g~~~~ 148 (185)
T 2jgn_A 87 EALHQFRSGKSPILVATAVAARGLDISNVKHVINFDL------------------PSDIEEYVHRIGRTGRVGNLGLATS 148 (185)
T ss_dssp HHHHHHHHTSSSEEEEEC------CCCSBSEEEESSC------------------CSSHHHHHHHHTTBCCTTSCEEEEE
T ss_pred HHHHHHHcCCCeEEEEcChhhcCCCcccCCEEEEeCC------------------CCCHHHHHHHccccCCCCCCcEEEE
Confidence 9999999999999999999999999999999999777 88999999999999999 7999999
Q ss_pred ccChHHhh
Q 006122 405 LYTEEYFV 412 (660)
Q Consensus 405 l~~~~~~~ 412 (660)
++++.+..
T Consensus 149 ~~~~~~~~ 156 (185)
T 2jgn_A 149 FFNERNIN 156 (185)
T ss_dssp EECGGGGG
T ss_pred EEchhhHH
Confidence 99976543
No 75
>3fmo_B ATP-dependent RNA helicase DDX19B; nuclear porin, nuclear pore complex, nucleocytoplasmic trans mRNA export, protein interaction, beta-propeller; HET: ADP; 2.51A {Homo sapiens}
Probab=99.79 E-value=6.8e-19 Score=180.29 Aligned_cols=189 Identities=16% Similarity=0.061 Sum_probs=124.9
Q ss_pred cccCCCCCCCccchHhHHHHhcCCCcHHHHHHHHHHHhcC--CEEEEEcCCCCcHH--HHHHHHHHhccccCCCeEEEEe
Q 006122 26 SSSLSSASSIGYGYASIEKQRQRLPVYKYRTAILYLVETH--ATTIIVGETGSGKT--TQIPQYLKEAGWADGGRVIACT 101 (660)
Q Consensus 26 ~~~~~~~~~~~~~~~~~~~~~~~lPi~~~~~~i~~~l~~~--~~vii~apTGsGKT--~~ip~~l~~~~~~~~~~~i~v~ 101 (660)
..+|.+++++......+......-|. ..|.+++..+..+ ++++++|||||||| +++|.+........+.++++++
T Consensus 91 ~~~f~~l~l~~~l~~~l~~~g~~~pt-~iQ~~ai~~il~~~~~~~l~~a~TGsGKT~a~~lp~l~~l~~~~~~~~~lil~ 169 (300)
T 3fmo_B 91 VKSFEELRLKPQLLQGVYAMGFNRPS-KIQENALPLMLAEPPQNLIAQSQSGTGKTAAFVLAMLSQVEPANKYPQCLCLS 169 (300)
T ss_dssp CCCSGGGTCCHHHHHHHHHTTCCSCC-HHHHHHHHHHTSSSCCCEEEECCTTSSHHHHHHHHHHHHCCTTSCSCCEEEEC
T ss_pred cCCHhhcCCCHHHHHHHHHcCCCCCC-HHHHHHHHHHHcCCCCeEEEECCCCCCccHHHHHHHHHhhhccCCCceEEEEc
Confidence 35799999999888888775555554 5566667777765 89999999999999 4555544332222344689999
Q ss_pred CchHHHHHHH--HHHHHHHh-CCeeeeEEeeeeeccccCCCCCceEEEechHHHHHHHhcCC--CCCCCcEEEEeCCCcC
Q 006122 102 QPRRLAVQAV--ASRVAEEM-GVKVGEEVGYTIRFEDFTNKDLTAIKFLTDGVLLREMMDDP--LLTKYSVIMVDEAHER 176 (660)
Q Consensus 102 p~r~la~~~~--~~~~~~~~-~~~~~~~vg~~~~~~~~~~~~~~~I~v~T~~~ll~~l~~~~--~l~~~~~iIiDE~Her 176 (660)
|+|+|+.|.. .+.+.... +..++..+|.... ...... ..+|+|+||++|++.+.... .+.++++||||||| +
T Consensus 170 PtreLa~Q~~~~~~~l~~~~~~~~~~~~~~~~~~-~~~~~~-~~~IlV~TP~~l~~~l~~~~~~~l~~l~~lVlDEad-~ 246 (300)
T 3fmo_B 170 PTYELALQTGKVIEQMGKFYPELKLAYAVRGNKL-ERGQKI-SEQIVIGTPGTVLDWCSKLKFIDPKKIKVFVLDEAD-V 246 (300)
T ss_dssp SSHHHHHHHHHHHHHHTTTSTTCCEEEESTTCCC-CTTCCC-CCSEEEECHHHHHHHHTTTCCCCGGGCSEEEETTHH-H
T ss_pred CcHHHHHHHHHHHHHHHhhCCCcEEEEEeCCccH-hhhhcC-CCCEEEECHHHHHHHHHhcCCCChhhceEEEEeCHH-H
Confidence 9999988742 33333222 3444444443221 112223 67899999999999986633 38899999999999 4
Q ss_pred CcC-hhHHHHHHHHHHHhcCCceEEEeecccc--hHHHHHHhhcC
Q 006122 177 SIS-TDILLGLLKKIQRCRSDLRLIISSATIE--AKSMSAFFHAR 218 (660)
Q Consensus 177 ~~~-~d~ll~~l~~~~~~~~~~kii~~SAT~~--~~~~~~~~~~~ 218 (660)
..+ ..+...+...+...+++.|++++|||++ ...++..+...
T Consensus 247 l~~~~~~~~~~~~i~~~~~~~~q~i~~SAT~~~~v~~~a~~~l~~ 291 (300)
T 3fmo_B 247 MIATQGHQDQSIRIQRMLPRNCQMLLFSATFEDSVWKFAQKVVPD 291 (300)
T ss_dssp HHHSTTHHHHHHHHHTTSCTTCEEEEEESCCCHHHHHHHHHHSSS
T ss_pred HhhccCcHHHHHHHHHhCCCCCEEEEEeccCCHHHHHHHHHHCCC
Confidence 433 3344444444444567899999999994 44555544433
No 76
>3iuy_A Probable ATP-dependent RNA helicase DDX53; REC-A-like, DEAD-BOX, structural genomics, structural genomi consortium, SGC, ATP-binding, hydrolase; HET: AMP; 2.40A {Homo sapiens}
Probab=99.79 E-value=3.8e-19 Score=174.98 Aligned_cols=179 Identities=20% Similarity=0.210 Sum_probs=120.3
Q ss_pred ccCCC-CCCCccchHhHHHHhcCCCcHHHHHHHHHHHhcCCEEEEEcCCCCcHH--HHHHHHHHhcc------ccCCCeE
Q 006122 27 SSLSS-ASSIGYGYASIEKQRQRLPVYKYRTAILYLVETHATTIIVGETGSGKT--TQIPQYLKEAG------WADGGRV 97 (660)
Q Consensus 27 ~~~~~-~~~~~~~~~~~~~~~~~lPi~~~~~~i~~~l~~~~~vii~apTGsGKT--~~ip~~l~~~~------~~~~~~~ 97 (660)
.+|.+ ++++......+.+.... ..+.+|.+++..+.++++++++|||||||| +++|.+..... ...+.++
T Consensus 19 ~~f~~~~~l~~~l~~~l~~~g~~-~~~~~Q~~~i~~~~~~~~~l~~apTGsGKT~~~~l~~~~~l~~~~~~~~~~~~~~~ 97 (228)
T 3iuy_A 19 CRFKDAFQQYPDLLKSIIRVGIL-KPTPIQSQAWPIILQGIDLIVVAQTGTGKTLSYLMPGFIHLDSQPISREQRNGPGM 97 (228)
T ss_dssp CSHHHHHTTCHHHHHHHHHHTCC-SCCHHHHHHHHHHHTTCCEEEECCTTSCHHHHHHHHHHHHHC---------CCCSE
T ss_pred hhHhhhhccCHHHHHHHHHCCCC-CCCHHHHHHHHHHhCCCCEEEECCCCChHHHHHHHHHHHHHHhccchhhccCCCcE
Confidence 34666 67777777777665433 456777888888888999999999999999 45564432211 1245668
Q ss_pred EEEeCchHHHHHHHHHHHHHH--hCCeeeeEEeeeeecccc-CCCCCceEEEechHHHHHHHhcCCC-CCCCcEEEEeCC
Q 006122 98 IACTQPRRLAVQAVASRVAEE--MGVKVGEEVGYTIRFEDF-TNKDLTAIKFLTDGVLLREMMDDPL-LTKYSVIMVDEA 173 (660)
Q Consensus 98 i~v~p~r~la~~~~~~~~~~~--~~~~~~~~vg~~~~~~~~-~~~~~~~I~v~T~~~ll~~l~~~~~-l~~~~~iIiDE~ 173 (660)
++++|+++|+.| +.+++.+. .+..+....|........ ......+|+|+||+.+.+.+..+.. +.++++||+|||
T Consensus 98 lil~Pt~~L~~q-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iiv~Tp~~l~~~~~~~~~~~~~~~~lViDEa 176 (228)
T 3iuy_A 98 LVLTPTRELALH-VEAECSKYSYKGLKSICIYGGRNRNGQIEDISKGVDIIIATPGRLNDLQMNNSVNLRSITYLVIDEA 176 (228)
T ss_dssp EEECSSHHHHHH-HHHHHHHHCCTTCCEEEECC------CHHHHHSCCSEEEECHHHHHHHHHTTCCCCTTCCEEEECCH
T ss_pred EEEeCCHHHHHH-HHHHHHHhcccCceEEEEECCCChHHHHHHhcCCCCEEEECHHHHHHHHHcCCcCcccceEEEEECH
Confidence 999999988875 44444443 245555555532221111 1112579999999999998877655 899999999999
Q ss_pred CcCCcChhHHHHHHHHHHHhcCCceEEEeecccch
Q 006122 174 HERSISTDILLGLLKKIQRCRSDLRLIISSATIEA 208 (660)
Q Consensus 174 Her~~~~d~ll~~l~~~~~~~~~~kii~~SAT~~~ 208 (660)
| +..+.++...+.+.+...+++.++++||||++.
T Consensus 177 h-~~~~~~~~~~~~~i~~~~~~~~~~l~~SAT~~~ 210 (228)
T 3iuy_A 177 D-KMLDMEFEPQIRKILLDVRPDRQTVMTSATWPD 210 (228)
T ss_dssp H-HHHHTTCHHHHHHHHHHSCSSCEEEEEESCCCH
T ss_pred H-HHhccchHHHHHHHHHhCCcCCeEEEEEeeCCH
Confidence 9 444444555555555566778999999999954
No 77
>1c4o_A DNA nucleotide excision repair enzyme UVRB; uvrabc, helicase, hypertherm protein, replication; HET: DNA BOG; 1.50A {Thermus thermophilus} SCOP: c.37.1.19 c.37.1.19 PDB: 1d2m_A*
Probab=99.78 E-value=5.4e-19 Score=199.84 Aligned_cols=113 Identities=18% Similarity=0.159 Sum_probs=101.0
Q ss_pred CCCcEEEEcCCHHHHHHHHHHHHHHhhhccCCCCCeEEEEccCCCCHHHHhhhcCCCCCCCcEEEEeCCCcccccCCCCe
Q 006122 275 PPGDILVFLTGQDDIDATIQLLTEEARTSKKNSSGLIILPLYSGLSRAEQEQVFSPTPRGKRKVVISTNIAETSLTLEGI 354 (660)
Q Consensus 275 ~~~~iLVF~~~~~~i~~l~~~L~~~~~~~~~~~~~~~v~~lh~~l~~~~r~~v~~~f~~g~~~vlvaT~i~e~Gidip~v 354 (660)
.++++||||+|++.++.+++.|.+. ++.+..+||++++.+|.++++.|++|+.+|+|||+++++|+|+|++
T Consensus 438 ~~~~vlVf~~t~~~ae~L~~~L~~~---------gi~~~~lh~~~~~~~R~~~~~~f~~g~~~VLvaT~~l~~GlDip~v 508 (664)
T 1c4o_A 438 RGERTLVTVLTVRMAEELTSFLVEH---------GIRARYLHHELDAFKRQALIRDLRLGHYDCLVGINLLREGLDIPEV 508 (664)
T ss_dssp TTCEEEEECSSHHHHHHHHHHHHHT---------TCCEEEECTTCCHHHHHHHHHHHHTTSCSEEEESCCCCTTCCCTTE
T ss_pred cCCEEEEEECCHHHHHHHHHHHHhc---------CCCceeecCCCCHHHHHHHHHHhhcCCceEEEccChhhcCccCCCC
Confidence 4568999999999999999999876 6788999999999999999999999999999999999999999999
Q ss_pred EEEEeCCCccceeecCCCCcccceeeecCHHhHHHhhcccCCCCCcEEEEccChH
Q 006122 355 VYVVDSGFSKQRFYNPISDIENLVVAPISKASARQRAGRAGRVRPGKCYRLYTEE 409 (660)
Q Consensus 355 ~~VId~g~~k~~~~~~~~~~~~l~~~~~s~~~~~QR~GRaGR~~~G~~~~l~~~~ 409 (660)
++||+++..+. | .|.|..+|+||+|||||.++|.|+.++++.
T Consensus 509 ~lVI~~d~d~~-------G------~p~s~~~~iQr~GRagR~~~G~~i~~~~~~ 550 (664)
T 1c4o_A 509 SLVAILDADKE-------G------FLRSERSLIQTIGRAARNARGEVWLYADRV 550 (664)
T ss_dssp EEEEETTTTSC-------S------GGGSHHHHHHHHGGGTTSTTCEEEEECSSC
T ss_pred CEEEEeCCccc-------C------CCCCHHHHHHHHCccCcCCCCEEEEEEcCC
Confidence 99999764221 1 167889999999999999999999999754
No 78
>1t6n_A Probable ATP-dependent RNA helicase; RECA-like fold, PRE-mRNA processing protein; HET: FLC; 1.94A {Homo sapiens} SCOP: c.37.1.19
Probab=99.78 E-value=1.1e-18 Score=170.71 Aligned_cols=186 Identities=16% Similarity=0.056 Sum_probs=123.2
Q ss_pred ccCCCCCCCccchHhHHHHhcCCCcHHHHHHHHHHHhcCCEEEEEcCCCCcHHHHHHHHHHhccc--cCCCeEEEEeCch
Q 006122 27 SSLSSASSIGYGYASIEKQRQRLPVYKYRTAILYLVETHATTIIVGETGSGKTTQIPQYLKEAGW--ADGGRVIACTQPR 104 (660)
Q Consensus 27 ~~~~~~~~~~~~~~~~~~~~~~lPi~~~~~~i~~~l~~~~~vii~apTGsGKT~~ip~~l~~~~~--~~~~~~i~v~p~r 104 (660)
++|.+++++......+.+... -..+++|.+++..+.+++++++++|||||||......+..... ..+.++++++|++
T Consensus 14 ~~f~~~~l~~~l~~~l~~~g~-~~~~~~Q~~~i~~~~~~~~~li~~~TGsGKT~~~~~~~~~~~~~~~~~~~~lil~Pt~ 92 (220)
T 1t6n_A 14 SGFRDFLLKPELLRAIVDCGF-EHPSEVQHECIPQAILGMDVLCQAKSGMGKTAVFVLATLQQLEPVTGQVSVLVMCHTR 92 (220)
T ss_dssp CCSTTSCCCHHHHHHHHHTTC-CCCCHHHHHHHHHHHTTCCEEEECCTTSCHHHHHHHHHHHHCCCCTTCCCEEEECSCH
T ss_pred CCHhhcCCCHHHHHHHHHCCC-CCCCHHHHHHHHHHhCCCCEEEECCCCCchhhhhhHHHHHhhhccCCCEEEEEEeCCH
Confidence 469999999988887765432 2367888888888888889999999999999544333333221 1234789999999
Q ss_pred HHHHHHHHHHHHHHh----CCeeeeEEeeeeecccc--CCCCCceEEEechHHHHHHHhcCCC-CCCCcEEEEeCCCcCC
Q 006122 105 RLAVQAVASRVAEEM----GVKVGEEVGYTIRFEDF--TNKDLTAIKFLTDGVLLREMMDDPL-LTKYSVIMVDEAHERS 177 (660)
Q Consensus 105 ~la~~~~~~~~~~~~----~~~~~~~vg~~~~~~~~--~~~~~~~I~v~T~~~ll~~l~~~~~-l~~~~~iIiDE~Her~ 177 (660)
+|+.|. .+.+.+.. +..++...|........ ......+|+|+||+.+.+.+..... +.++++||+||||...
T Consensus 93 ~L~~q~-~~~~~~~~~~~~~~~v~~~~g~~~~~~~~~~~~~~~~~i~v~T~~~l~~~~~~~~~~~~~~~~lViDEah~~~ 171 (220)
T 1t6n_A 93 ELAFQI-SKEYERFSKYMPNVKVAVFFGGLSIKKDEEVLKKNCPHIVVGTPGRILALARNKSLNLKHIKHFILDECDKML 171 (220)
T ss_dssp HHHHHH-HHHHHHHTTTSTTCCEEEESCCSCHHHHHHHHHHSCCSEEEECHHHHHHHHHTTSSCCTTCCEEEEESHHHHH
T ss_pred HHHHHH-HHHHHHHHhhCCCceEEEEeCCCChHHHHHHHhcCCCCEEEeCHHHHHHHHHhCCCCcccCCEEEEcCHHHHh
Confidence 988763 33333332 55666555532111100 0111469999999999998876654 8899999999999432
Q ss_pred cChhHHHHHHHHHHHhcCCceEEEeecccc--hHHHHHH
Q 006122 178 ISTDILLGLLKKIQRCRSDLRLIISSATIE--AKSMSAF 214 (660)
Q Consensus 178 ~~~d~ll~~l~~~~~~~~~~kii~~SAT~~--~~~~~~~ 214 (660)
-+.++...+.+.+....++.+++++|||++ ...+.+.
T Consensus 172 ~~~~~~~~~~~i~~~~~~~~~~i~~SAT~~~~~~~~~~~ 210 (220)
T 1t6n_A 172 EQLDMRRDVQEIFRMTPHEKQVMMFSATLSKEIRPVCRK 210 (220)
T ss_dssp SSHHHHHHHHHHHHTSCSSSEEEEEESCCCTTTHHHHHT
T ss_pred cccCcHHHHHHHHHhCCCcCeEEEEEeecCHHHHHHHHH
Confidence 223444333333334456889999999993 3445443
No 79
>2d7d_A Uvrabc system protein B; helicase, protein-DNA-ADP ternary complex, hydrolase/DNA complex; HET: ADP; 2.10A {Bacillus subtilis} PDB: 2nmv_A* 2fdc_A* 1t5l_A 3uwx_B 1d9z_A* 1d9x_A 2d7d_B* 2nmv_B*
Probab=99.78 E-value=4.4e-19 Score=200.49 Aligned_cols=113 Identities=20% Similarity=0.184 Sum_probs=101.1
Q ss_pred CCCcEEEEcCCHHHHHHHHHHHHHHhhhccCCCCCeEEEEccCCCCHHHHhhhcCCCCCCCcEEEEeCCCcccccCCCCe
Q 006122 275 PPGDILVFLTGQDDIDATIQLLTEEARTSKKNSSGLIILPLYSGLSRAEQEQVFSPTPRGKRKVVISTNIAETSLTLEGI 354 (660)
Q Consensus 275 ~~~~iLVF~~~~~~i~~l~~~L~~~~~~~~~~~~~~~v~~lh~~l~~~~r~~v~~~f~~g~~~vlvaT~i~e~Gidip~v 354 (660)
.++++||||+|++.++.+++.|.+. ++.+..+||++++.+|.++++.|++|+.+|+|||+++++|+|+|++
T Consensus 444 ~~~~vlVf~~t~~~ae~L~~~L~~~---------gi~~~~lh~~~~~~~R~~~l~~f~~g~~~VLVaT~~l~~GlDip~v 514 (661)
T 2d7d_A 444 RNERVLVTTLTKKMSEDLTDYLKEI---------GIKVNYLHSEIKTLERIEIIRDLRLGKYDVLVGINLLREGLDIPEV 514 (661)
T ss_dssp TTCEEEEECSSHHHHHHHHHHHHHT---------TCCEEEECTTCCHHHHHHHHHHHHHTSCSEEEESCCCSTTCCCTTE
T ss_pred cCCeEEEEECCHHHHHHHHHHHHhc---------CCCeEEEeCCCCHHHHHHHHHHHhcCCeEEEEecchhhCCcccCCC
Confidence 4578999999999999999999876 6788999999999999999999999999999999999999999999
Q ss_pred EEEEeCCCccceeecCCCCcccceeeecCHHhHHHhhcccCCCCCcEEEEccChH
Q 006122 355 VYVVDSGFSKQRFYNPISDIENLVVAPISKASARQRAGRAGRVRPGKCYRLYTEE 409 (660)
Q Consensus 355 ~~VId~g~~k~~~~~~~~~~~~l~~~~~s~~~~~QR~GRaGR~~~G~~~~l~~~~ 409 (660)
++||+++..+ .| .|.|..+|.||+|||||..+|.|+.++++.
T Consensus 515 ~lVi~~d~d~-------~G------~p~s~~~~iQr~GRagR~~~G~~i~~~~~~ 556 (661)
T 2d7d_A 515 SLVAILDADK-------EG------FLRSERSLIQTIGRAARNAEGRVIMYADKI 556 (661)
T ss_dssp EEEEETTTTC-------CT------TTTSHHHHHHHHHTTTTSTTCEEEEECSSC
T ss_pred CEEEEeCccc-------cc------CCCCHHHHHHHhCcccCCCCCEEEEEEeCC
Confidence 9999966521 11 167889999999999999999999999864
No 80
>2p6n_A ATP-dependent RNA helicase DDX41; DEAD, structural genomics, structural genomic consortium, SGC, hydrolase; 2.60A {Homo sapiens}
Probab=99.78 E-value=3.7e-19 Score=169.49 Aligned_cols=132 Identities=20% Similarity=0.312 Sum_probs=108.9
Q ss_pred cceEEecCCCchhHHHHHHHHHHHHHhcCCCCcEEEEcCCHHHHHHHHHHHHHHhhhccCCCCCeEEEEccCCCCHHHHh
Q 006122 246 NVQIHYVEEPVSDYVQAAVSTVLLIHDKEPPGDILVFLTGQDDIDATIQLLTEEARTSKKNSSGLIILPLYSGLSRAEQE 325 (660)
Q Consensus 246 ~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iLVF~~~~~~i~~l~~~L~~~~~~~~~~~~~~~v~~lh~~l~~~~r~ 325 (660)
.++..+......+... .+..+... .++++||||++++.++.+++.|.+. ++.+..+||++++++|.
T Consensus 29 ~i~q~~~~~~~~~K~~----~L~~~l~~-~~~~~lVF~~~~~~~~~l~~~L~~~---------g~~~~~lhg~~~~~~R~ 94 (191)
T 2p6n_A 29 DVIQEVEYVKEEAKMV----YLLECLQK-TPPPVLIFAEKKADVDAIHEYLLLK---------GVEAVAIHGGKDQEERT 94 (191)
T ss_dssp CSEEEEEECCGGGHHH----HHHHHHTT-SCSCEEEECSCHHHHHHHHHHHHHH---------TCCEEEECTTSCHHHHH
T ss_pred CceEEEEEcChHHHHH----HHHHHHHh-CCCCEEEEECCHHHHHHHHHHHHHc---------CCcEEEEeCCCCHHHHH
Confidence 3444454444444333 33333333 3568999999999999999999876 78899999999999999
Q ss_pred hhcCCCCCCCcEEEEeCCCcccccCCCCeEEEEeCCCccceeecCCCCcccceeeecCHHhHHHhhcccCCC-CCcEEEE
Q 006122 326 QVFSPTPRGKRKVVISTNIAETSLTLEGIVYVVDSGFSKQRFYNPISDIENLVVAPISKASARQRAGRAGRV-RPGKCYR 404 (660)
Q Consensus 326 ~v~~~f~~g~~~vlvaT~i~e~Gidip~v~~VId~g~~k~~~~~~~~~~~~l~~~~~s~~~~~QR~GRaGR~-~~G~~~~ 404 (660)
++++.|++|..+|||||+++++|+|+|++++||+++. |.+..+|.||+||+||. ++|.|+.
T Consensus 95 ~~l~~F~~g~~~vLvaT~~~~~Gldi~~v~~VI~~d~------------------p~~~~~~~qr~GR~gR~g~~g~~i~ 156 (191)
T 2p6n_A 95 KAIEAFREGKKDVLVATDVASKGLDFPAIQHVINYDM------------------PEEIENYVHRIGRTGCSGNTGIATT 156 (191)
T ss_dssp HHHHHHHHTSCSEEEECHHHHTTCCCCCCSEEEESSC------------------CSSHHHHHHHHTTSCC---CCEEEE
T ss_pred HHHHHHhcCCCEEEEEcCchhcCCCcccCCEEEEeCC------------------CCCHHHHHHHhCccccCCCCcEEEE
Confidence 9999999999999999999999999999999999776 88999999999999999 7899999
Q ss_pred ccChH
Q 006122 405 LYTEE 409 (660)
Q Consensus 405 l~~~~ 409 (660)
++++.
T Consensus 157 l~~~~ 161 (191)
T 2p6n_A 157 FINKA 161 (191)
T ss_dssp EECTT
T ss_pred EEcCc
Confidence 99864
No 81
>2gxq_A Heat resistant RNA dependent ATPase; RNA helicase, atomic resolution, AMP complex, ribosome biogenesis, thermophilic, hydrolase; HET: AMP; 1.20A {Thermus thermophilus HB27} PDB: 2gxs_A* 2gxu_A 3mwj_A 3mwk_A* 3mwl_A* 3nbf_A* 3nej_A
Probab=99.78 E-value=9.4e-19 Score=169.34 Aligned_cols=187 Identities=21% Similarity=0.130 Sum_probs=123.4
Q ss_pred cCCCCCCCccchHhHHHHhcCCCcHHHHHHHHHHHhcCCEEEEEcCCCCcHHHHHHHHHHhccc-----cCCCeEEEEeC
Q 006122 28 SLSSASSIGYGYASIEKQRQRLPVYKYRTAILYLVETHATTIIVGETGSGKTTQIPQYLKEAGW-----ADGGRVIACTQ 102 (660)
Q Consensus 28 ~~~~~~~~~~~~~~~~~~~~~lPi~~~~~~i~~~l~~~~~vii~apTGsGKT~~ip~~l~~~~~-----~~~~~~i~v~p 102 (660)
+|.+++++......+.+. .....+++|.+++..+.+++++++.+|||||||......+..... ..+.++++++|
T Consensus 2 ~f~~~~l~~~l~~~l~~~-~~~~~~~~Q~~~i~~~~~~~~~li~~~TGsGKT~~~~~~~~~~l~~~~~~~~~~~~lil~P 80 (207)
T 2gxq_A 2 EFKDFPLKPEILEALHGR-GLTTPTPIQAAALPLALEGKDLIGQARTGTGKTLAFALPIAERLAPSQERGRKPRALVLTP 80 (207)
T ss_dssp CGGGSCCCHHHHHHHHHT-TCCSCCHHHHHHHHHHHTTCCEEEECCTTSCHHHHHHHHHHHHCCCCCCTTCCCSEEEECS
T ss_pred ChhhcCCCHHHHHHHHHc-CCCCCCHHHHHHHHHHcCCCCEEEECCCCChHHHHHHHHHHHHHhhccccCCCCcEEEEEC
Confidence 488899998887766553 334567888888999999999999999999999543333333221 23456889999
Q ss_pred chHHHHHHHHHHHHHHh-CCeeeeEEeeeeecc--ccCCCCCceEEEechHHHHHHHhcCCC-CCCCcEEEEeCCCcCCc
Q 006122 103 PRRLAVQAVASRVAEEM-GVKVGEEVGYTIRFE--DFTNKDLTAIKFLTDGVLLREMMDDPL-LTKYSVIMVDEAHERSI 178 (660)
Q Consensus 103 ~r~la~~~~~~~~~~~~-~~~~~~~vg~~~~~~--~~~~~~~~~I~v~T~~~ll~~l~~~~~-l~~~~~iIiDE~Her~~ 178 (660)
++.++.| +.+.+.+.. +..+....|...... ..... ..+|+|+||+.+.+.+..... +.++++||+||||. ..
T Consensus 81 ~~~L~~q-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~i~v~T~~~l~~~~~~~~~~~~~~~~iViDEah~-~~ 157 (207)
T 2gxq_A 81 TRELALQ-VASELTAVAPHLKVVAVYGGTGYGKQKEALLR-GADAVVATPGRALDYLRQGVLDLSRVEVAVLDEADE-ML 157 (207)
T ss_dssp SHHHHHH-HHHHHHHHCTTSCEEEECSSSCSHHHHHHHHH-CCSEEEECHHHHHHHHHHTSSCCTTCSEEEEESHHH-HH
T ss_pred CHHHHHH-HHHHHHHHhhcceEEEEECCCChHHHHHHhhC-CCCEEEECHHHHHHHHHcCCcchhhceEEEEEChhH-hh
Confidence 9888765 445555543 234444444221100 00112 579999999999998876544 88999999999993 33
Q ss_pred ChhHHHHHHHHHHHhcCCceEEEeecccc--hHHHHHHhhcC
Q 006122 179 STDILLGLLKKIQRCRSDLRLIISSATIE--AKSMSAFFHAR 218 (660)
Q Consensus 179 ~~d~ll~~l~~~~~~~~~~kii~~SAT~~--~~~~~~~~~~~ 218 (660)
+.++...+.+.+....++.+++++|||++ ...+.+.+...
T Consensus 158 ~~~~~~~~~~i~~~~~~~~~~i~~SAT~~~~~~~~~~~~~~~ 199 (207)
T 2gxq_A 158 SMGFEEEVEALLSATPPSRQTLLFSATLPSWAKRLAERYMKN 199 (207)
T ss_dssp HTTCHHHHHHHHHTSCTTSEEEEECSSCCHHHHHHHHHHCSS
T ss_pred ccchHHHHHHHHHhCCccCeEEEEEEecCHHHHHHHHHHcCC
Confidence 33333333333334556889999999995 34555544433
No 82
>2oxc_A Probable ATP-dependent RNA helicase DDX20; DEAD, structural genomics, structural genomics consortium, SGC, hydrolase; HET: ADP; 1.30A {Homo sapiens} PDB: 3b7g_A*
Probab=99.77 E-value=8.1e-19 Score=172.90 Aligned_cols=185 Identities=14% Similarity=0.037 Sum_probs=122.0
Q ss_pred cccCCCCCCCccchHhHHHHhcCCCcHHHHHHHHHHHhcCCEEEEEcCCCCcHHHH--HHHHHHhccccCCCeEEEEeCc
Q 006122 26 SSSLSSASSIGYGYASIEKQRQRLPVYKYRTAILYLVETHATTIIVGETGSGKTTQ--IPQYLKEAGWADGGRVIACTQP 103 (660)
Q Consensus 26 ~~~~~~~~~~~~~~~~~~~~~~~lPi~~~~~~i~~~l~~~~~vii~apTGsGKT~~--ip~~l~~~~~~~~~~~i~v~p~ 103 (660)
..+|.+++++......+.+.. --..+.+|.+++..+.+++++++++|||||||.. +|.+........+.++++++|+
T Consensus 23 ~~~f~~l~l~~~l~~~l~~~g-~~~~~~~Q~~~i~~~~~~~~~l~~a~TGsGKT~~~~l~~l~~l~~~~~~~~~lil~Pt 101 (230)
T 2oxc_A 23 PADFESLLLSRPVLEGLRAAG-FERPSPVQLKAIPLGRCGLDLIVQAKSGTGKTCVFSTIALDSLVLENLSTQILILAPT 101 (230)
T ss_dssp -CCGGGGTCCHHHHHHHHHTT-CCSCCHHHHHHHHHHHTTCCEEEECCTTSSHHHHHHHHHHHHCCTTSCSCCEEEECSS
T ss_pred CCCHhhcCCCHHHHHHHHHCC-CCCCCHHHHHHHHHHhCCCCEEEECCCCCcHHHHHHHHHHHHHHhcCCCceEEEEeCC
Confidence 356999999888777775533 2236788888899999999999999999999944 4433222222234678999999
Q ss_pred hHHHHHHHHHHHHHHh----CCeeeeEEeeeeecc-ccCCCCCceEEEechHHHHHHHhcCCC-CCCCcEEEEeCCCcCC
Q 006122 104 RRLAVQAVASRVAEEM----GVKVGEEVGYTIRFE-DFTNKDLTAIKFLTDGVLLREMMDDPL-LTKYSVIMVDEAHERS 177 (660)
Q Consensus 104 r~la~~~~~~~~~~~~----~~~~~~~vg~~~~~~-~~~~~~~~~I~v~T~~~ll~~l~~~~~-l~~~~~iIiDE~Her~ 177 (660)
++|+.|. .+.+.+.. +..++...|.....+ ..... ..+|+|+||+.+.+.+..+.. +.++++||+|||| +.
T Consensus 102 ~~L~~q~-~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~-~~~Iiv~Tp~~l~~~~~~~~~~~~~~~~lViDEah-~~ 178 (230)
T 2oxc_A 102 REIAVQI-HSVITAIGIKMEGLECHVFIGGTPLSQDKTRLK-KCHIAVGSPGRIKQLIELDYLNPGSIRLFILDEAD-KL 178 (230)
T ss_dssp HHHHHHH-HHHHHHHTTTSTTCCEEEECTTSCHHHHHHHTT-SCSEEEECHHHHHHHHHTTSSCGGGCCEEEESSHH-HH
T ss_pred HHHHHHH-HHHHHHHhcccCCceEEEEeCCCCHHHHHHhcc-CCCEEEECHHHHHHHHhcCCcccccCCEEEeCCch-Hh
Confidence 9988763 33333332 455555555322111 11123 689999999999998876554 7889999999999 33
Q ss_pred cChh-HHHHHHHHHHHhcCCceEEEeecccchHHHHHHh
Q 006122 178 ISTD-ILLGLLKKIQRCRSDLRLIISSATIEAKSMSAFF 215 (660)
Q Consensus 178 ~~~d-~ll~~l~~~~~~~~~~kii~~SAT~~~~~~~~~~ 215 (660)
.+.+ +...+...+....++.+++++|||++.+ +.+++
T Consensus 179 ~~~~~~~~~~~~i~~~~~~~~~~l~lSAT~~~~-~~~~~ 216 (230)
T 2oxc_A 179 LEEGSFQEQINWIYSSLPASKQMLAVSATYPEF-LANAL 216 (230)
T ss_dssp HSTTSSHHHHHHHHHHSCSSCEEEEEESCCCHH-HHHHH
T ss_pred hcCcchHHHHHHHHHhCCCCCeEEEEEeccCHH-HHHHH
Confidence 3332 3333322333345578999999999644 33433
No 83
>3ly5_A ATP-dependent RNA helicase DDX18; alpha-beta, structural genomics, structural genomics consort ATP-binding, hydrolase, nucleotide-binding, RNA-B; 2.80A {Homo sapiens}
Probab=99.76 E-value=1.3e-18 Score=174.87 Aligned_cols=184 Identities=20% Similarity=0.189 Sum_probs=118.3
Q ss_pred cCCCCC--CCccchHhHHHHhcCCCcHHHHHHHHHHHhcCCEEEEEcCCCCcHH--HHHHHHHHhcc----ccCCCeEEE
Q 006122 28 SLSSAS--SIGYGYASIEKQRQRLPVYKYRTAILYLVETHATTIIVGETGSGKT--TQIPQYLKEAG----WADGGRVIA 99 (660)
Q Consensus 28 ~~~~~~--~~~~~~~~~~~~~~~lPi~~~~~~i~~~l~~~~~vii~apTGsGKT--~~ip~~l~~~~----~~~~~~~i~ 99 (660)
+|.+++ ++......+.+. .-...++.|.+++..+..+++++++|||||||| +++|.+..... ...+.++++
T Consensus 53 ~f~~l~~~l~~~l~~~l~~~-g~~~~~~~Q~~~i~~~~~~~~~lv~a~TGsGKT~~~~l~~l~~l~~~~~~~~~~~~~li 131 (262)
T 3ly5_A 53 SFASLCNLVNENTLKAIKEM-GFTNMTEIQHKSIRPLLEGRDLLAAAKTGSGKTLAFLIPAVELIVKLRFMPRNGTGVLI 131 (262)
T ss_dssp CC-----CCCHHHHHHHHHT-TCCBCCHHHHHHHHHHHHTCCCEECCCTTSCHHHHHHHHHHHHHHHTTCCGGGCCCEEE
T ss_pred ChhHhccccCHHHHHHHHHC-CCCCCCHHHHHHHHHHhCCCcEEEEccCCCCchHHHHHHHHHHHHhccccccCCceEEE
Confidence 455555 566565555443 333467788888888888899999999999999 45554322111 123566899
Q ss_pred EeCchHHHHHHHH--HHHHHHhCCeeeeEEeeeeecccc--CCCCCceEEEechHHHHHHHhcCC--CCCCCcEEEEeCC
Q 006122 100 CTQPRRLAVQAVA--SRVAEEMGVKVGEEVGYTIRFEDF--TNKDLTAIKFLTDGVLLREMMDDP--LLTKYSVIMVDEA 173 (660)
Q Consensus 100 v~p~r~la~~~~~--~~~~~~~~~~~~~~vg~~~~~~~~--~~~~~~~I~v~T~~~ll~~l~~~~--~l~~~~~iIiDE~ 173 (660)
++|+|+|+.|... +.+....+..++..+|........ ... ..+|+|+||+++...+.... .+.++++||||||
T Consensus 132 l~Pt~~La~q~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~-~~~Iiv~Tp~~l~~~~~~~~~~~~~~l~~lViDEa 210 (262)
T 3ly5_A 132 LSPTRELAMQTFGVLKELMTHHVHTYGLIMGGSNRSAEAQKLGN-GINIIVATPGRLLDHMQNTPGFMYKNLQCLVIDEA 210 (262)
T ss_dssp ECSSHHHHHHHHHHHHHHTTTCCSCEEEECSSSCHHHHHHHHHH-CCSEEEECHHHHHHHHHHCTTCCCTTCCEEEECSH
T ss_pred EeCCHHHHHHHHHHHHHHHhhcCceEEEEECCCCHHHHHHHhcC-CCCEEEEcHHHHHHHHHccCCcccccCCEEEEcCh
Confidence 9999999887432 222233455556666633222111 112 47899999999999887654 4889999999999
Q ss_pred CcCCcChhHHHHHHHHHHHhcCCceEEEeecccc--hHHHHHH
Q 006122 174 HERSISTDILLGLLKKIQRCRSDLRLIISSATIE--AKSMSAF 214 (660)
Q Consensus 174 Her~~~~d~ll~~l~~~~~~~~~~kii~~SAT~~--~~~~~~~ 214 (660)
| +..+.++...+.+.+....++.++++||||++ ...+.+.
T Consensus 211 h-~l~~~~~~~~l~~i~~~~~~~~q~l~~SAT~~~~v~~~~~~ 252 (262)
T 3ly5_A 211 D-RILDVGFEEELKQIIKLLPTRRQTMLFSATQTRKVEDLARI 252 (262)
T ss_dssp H-HHHHTTCHHHHHHHHHHSCSSSEEEEECSSCCHHHHHHHHH
T ss_pred H-HHhhhhHHHHHHHHHHhCCCCCeEEEEEecCCHHHHHHHHH
Confidence 9 44444444444444445567789999999994 3445443
No 84
>2yjt_D ATP-dependent RNA helicase SRMB, regulator of ribonuclease activity A; hydrolase inhibitor-hydrolase complex, DEAD box RNA helicase; 2.90A {Escherichia coli}
Probab=99.62 E-value=5.2e-20 Score=172.39 Aligned_cols=117 Identities=17% Similarity=0.308 Sum_probs=105.0
Q ss_pred HHHhcCCCCcEEEEcCCHHHHHHHHHHHHHHhhhccCCCCCeEEEEccCCCCHHHHhhhcCCCCCCCcEEEEeCCCcccc
Q 006122 269 LIHDKEPPGDILVFLTGQDDIDATIQLLTEEARTSKKNSSGLIILPLYSGLSRAEQEQVFSPTPRGKRKVVISTNIAETS 348 (660)
Q Consensus 269 ~~~~~~~~~~iLVF~~~~~~i~~l~~~L~~~~~~~~~~~~~~~v~~lh~~l~~~~r~~v~~~f~~g~~~vlvaT~i~e~G 348 (660)
.+.....++++||||+++++++.+++.|.+. ++.+..+||++++.+|..+++.|++|..+|||||+++++|
T Consensus 23 ~ll~~~~~~~~iVF~~~~~~~~~l~~~L~~~---------~~~~~~~~g~~~~~~r~~~~~~f~~g~~~vLvaT~~~~~G 93 (170)
T 2yjt_D 23 HLLKQPEATRSIVFVRKRERVHELANWLREA---------GINNCYLEGEMVQGKRNEAIKRLTEGRVNVLVATDVAARG 93 (170)
Confidence 3334445678999999999999999999775 7889999999999999999999999999999999999999
Q ss_pred cCCCCeEEEEeCCCccceeecCCCCcccceeeecCHHhHHHhhcccCCC-CCcEEEEccChHHhh
Q 006122 349 LTLEGIVYVVDSGFSKQRFYNPISDIENLVVAPISKASARQRAGRAGRV-RPGKCYRLYTEEYFV 412 (660)
Q Consensus 349 idip~v~~VId~g~~k~~~~~~~~~~~~l~~~~~s~~~~~QR~GRaGR~-~~G~~~~l~~~~~~~ 412 (660)
+|+|++++||+++. |.|..+|.||+||+||. ++|.|+.++++.+..
T Consensus 94 id~~~~~~Vi~~~~------------------p~~~~~~~qr~GR~~R~g~~g~~~~~~~~~~~~ 140 (170)
T 2yjt_D 94 IDIPDVSHVFNFDM------------------PRSGDTYLHRIGRTARAGRKGTAISLVEAHDHL 140 (170)
Confidence 99999999999777 78899999999999999 789999999876543
No 85
>3dkp_A Probable ATP-dependent RNA helicase DDX52; DEAD, ADP, structural genomics, structural GEN consortium, SGC, rRNA, ATP-binding, hydrolase; HET: ADP; 2.10A {Homo sapiens}
Probab=99.75 E-value=5.1e-18 Score=168.87 Aligned_cols=180 Identities=19% Similarity=0.147 Sum_probs=116.2
Q ss_pred CCCccchHhHHHHhcCCCcHHHHHHHHHHHhcCCEEEEEcCCCCcHHH--HHHHHHHhcc-ccCCCeEEEEeCchHHHHH
Q 006122 33 SSIGYGYASIEKQRQRLPVYKYRTAILYLVETHATTIIVGETGSGKTT--QIPQYLKEAG-WADGGRVIACTQPRRLAVQ 109 (660)
Q Consensus 33 ~~~~~~~~~~~~~~~~lPi~~~~~~i~~~l~~~~~vii~apTGsGKT~--~ip~~l~~~~-~~~~~~~i~v~p~r~la~~ 109 (660)
+++......+.+. .--..+++|.+++..+.+++++++.||||||||. ++|.+..... ...+.++++++|+++|+.|
T Consensus 35 ~l~~~l~~~l~~~-g~~~~~~~Q~~~i~~~~~~~~~l~~a~TGsGKT~~~~l~~l~~l~~~~~~~~~~lil~Pt~~L~~q 113 (245)
T 3dkp_A 35 KINSRLLQNILDA-GFQMPTPIQMQAIPVMLHGRELLASAPTGSGKTLAFSIPILMQLKQPANKGFRALIISPTRELASQ 113 (245)
T ss_dssp CCCHHHHHHHHHT-TCCSCCHHHHHHHHHHHTTCCEEEECCTTSCHHHHHHHHHHHHHCSCCSSSCCEEEECSSHHHHHH
T ss_pred CCCHHHHHHHHHC-CCCCCCHHHHHHHHHHhCCCCEEEECCCCCcHHHHHHHHHHHHHhhcccCCceEEEEeCCHHHHHH
Confidence 6777666666553 3334677888888888889999999999999994 4554433221 1234568999999999877
Q ss_pred HHHHHHHHH---hCCeeeeEEeeee---eccccCCCCCceEEEechHHHHHHHhcCC---CCCCCcEEEEeCCCcCCcC-
Q 006122 110 AVASRVAEE---MGVKVGEEVGYTI---RFEDFTNKDLTAIKFLTDGVLLREMMDDP---LLTKYSVIMVDEAHERSIS- 179 (660)
Q Consensus 110 ~~~~~~~~~---~~~~~~~~vg~~~---~~~~~~~~~~~~I~v~T~~~ll~~l~~~~---~l~~~~~iIiDE~Her~~~- 179 (660)
.. +.+.+. .+..+....|... ........ ..+|+|+||+++...+.... .+.++++||+||||...-+
T Consensus 114 ~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~I~v~Tp~~l~~~l~~~~~~~~~~~~~~lViDEah~~~~~~ 191 (245)
T 3dkp_A 114 IH-RELIKISEGTGFRIHMIHKAAVAAKKFGPKSSK-KFDILVTTPNRLIYLLKQDPPGIDLASVEWLVVDESDKLFEDG 191 (245)
T ss_dssp HH-HHHHHHTTTSCCCEECCCHHHHHHTTTSTTSCC-CCCEEEECHHHHHHHHHSSSCSCCCTTCCEEEESSHHHHHHHC
T ss_pred HH-HHHHHHhcccCceEEEEecCccHHHHhhhhhcC-CCCEEEECHHHHHHHHHhCCCCcccccCcEEEEeChHHhcccc
Confidence 43 333332 3444444333221 11122223 68999999999999987653 3889999999999943211
Q ss_pred -hhHHHHHHHHHHHh-cCCceEEEeecccc--hHHHHHHh
Q 006122 180 -TDILLGLLKKIQRC-RSDLRLIISSATIE--AKSMSAFF 215 (660)
Q Consensus 180 -~d~ll~~l~~~~~~-~~~~kii~~SAT~~--~~~~~~~~ 215 (660)
.++...+...+... .++.++++||||++ ...+.+.+
T Consensus 192 ~~~~~~~~~~i~~~~~~~~~~~~~~SAT~~~~v~~~~~~~ 231 (245)
T 3dkp_A 192 KTGFRDQLASIFLACTSHKVRRAMFSATFAYDVEQWCKLN 231 (245)
T ss_dssp --CHHHHHHHHHHHCCCTTCEEEEEESSCCHHHHHHHHHH
T ss_pred cccHHHHHHHHHHhcCCCCcEEEEEeccCCHHHHHHHHHh
Confidence 34555555444433 35789999999994 33444433
No 86
>1wrb_A DJVLGB; RNA helicase, DEAD BOX, VASA, structural genomics, NPPSFA, N project on protein structural and functional analyses; 2.40A {Dugesia japonica} SCOP: c.37.1.19
Probab=99.74 E-value=6.1e-18 Score=169.15 Aligned_cols=186 Identities=17% Similarity=0.121 Sum_probs=119.6
Q ss_pred ccCCCCCCCccchHhHHHHhcCCCcHHHHHHHHHHHhcCCEEEEEcCCCCcHHH--HHHHHHHhcc---------ccCCC
Q 006122 27 SSLSSASSIGYGYASIEKQRQRLPVYKYRTAILYLVETHATTIIVGETGSGKTT--QIPQYLKEAG---------WADGG 95 (660)
Q Consensus 27 ~~~~~~~~~~~~~~~~~~~~~~lPi~~~~~~i~~~l~~~~~vii~apTGsGKT~--~ip~~l~~~~---------~~~~~ 95 (660)
.+|.+++++......+.+... -..+.+|.+++.++.+++++++++|||||||. ++|.+..... ...+.
T Consensus 23 ~~f~~l~l~~~l~~~l~~~g~-~~~~~~Q~~~i~~i~~~~~~l~~a~TGsGKT~~~~~~~l~~l~~~~~~~~~~~~~~~~ 101 (253)
T 1wrb_A 23 ENFDELKLDPTIRNNILLASY-QRPTPIQKNAIPAILEHRDIMACAQTGSGKTAAFLIPIINHLVCQDLNQQRYSKTAYP 101 (253)
T ss_dssp CSSGGGSCCCSTTTTTTTTTC-CSCCHHHHHHHHHHHTTCCEEEECCTTSSHHHHHHHHHHHHHHTTCC------CCBCC
T ss_pred CCHhhCCCCHHHHHHHHHCCC-CCCCHHHHHHHHHHhCCCCEEEECCCCChHHHHHHHHHHHHHHhhccccccccccCCc
Confidence 469999998887766644332 34577888888889999999999999999993 4454322111 11235
Q ss_pred eEEEEeCchHHHHHHHH--HHHHHHhCCeeeeEEeeeeeccc--cCCCCCceEEEechHHHHHHHhcCCC-CCCCcEEEE
Q 006122 96 RVIACTQPRRLAVQAVA--SRVAEEMGVKVGEEVGYTIRFED--FTNKDLTAIKFLTDGVLLREMMDDPL-LTKYSVIMV 170 (660)
Q Consensus 96 ~~i~v~p~r~la~~~~~--~~~~~~~~~~~~~~vg~~~~~~~--~~~~~~~~I~v~T~~~ll~~l~~~~~-l~~~~~iIi 170 (660)
++++++|+|+|+.|... +.+....+..+....|....... .... ..+|+|+||+.|.+.+..... +.++++||+
T Consensus 102 ~~lil~Pt~~L~~q~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~-~~~Ivv~Tp~~l~~~l~~~~~~~~~~~~lVi 180 (253)
T 1wrb_A 102 KCLILAPTRELAIQILSESQKFSLNTPLRSCVVYGGADTHSQIREVQM-GCHLLVATPGRLVDFIEKNKISLEFCKYIVL 180 (253)
T ss_dssp SEEEECSSHHHHHHHHHHHHHHHTTSSCCEEEECSSSCSHHHHHHHSS-CCSEEEECHHHHHHHHHTTSBCCTTCCEEEE
T ss_pred eEEEEECCHHHHHHHHHHHHHHhccCCceEEEEECCCCHHHHHHHhCC-CCCEEEECHHHHHHHHHcCCCChhhCCEEEE
Confidence 78999999999887432 23333334555555553221111 1112 579999999999998876654 889999999
Q ss_pred eCCCcCCcChhHHHHHHHHHHH--hcC--CceEEEeecccch--HHHHHHh
Q 006122 171 DEAHERSISTDILLGLLKKIQR--CRS--DLRLIISSATIEA--KSMSAFF 215 (660)
Q Consensus 171 DE~Her~~~~d~ll~~l~~~~~--~~~--~~kii~~SAT~~~--~~~~~~~ 215 (660)
||||. ..+..+...+...+.. ... +.+++++|||++. ..+.+.+
T Consensus 181 DEah~-~~~~~~~~~~~~i~~~~~~~~~~~~q~l~~SAT~~~~~~~~~~~~ 230 (253)
T 1wrb_A 181 DEADR-MLDMGFEPQIRKIIEESNMPSGINRQTLMFSATFPKEIQKLAADF 230 (253)
T ss_dssp ETHHH-HHHTTCHHHHHHHHHSSCCCCGGGCEEEEEESSCCHHHHHHHHHH
T ss_pred eCHHH-HHhCchHHHHHHHHhhccCCCCCCcEEEEEEEeCCHHHHHHHHHH
Confidence 99993 3322232222222221 222 6789999999944 3444433
No 87
>2ipc_A Preprotein translocase SECA subunit; nucleotide binding fold, ATPase, parallel dimer; 2.80A {Thermus thermophilus}
Probab=99.69 E-value=3.9e-15 Score=165.77 Aligned_cols=119 Identities=20% Similarity=0.207 Sum_probs=86.4
Q ss_pred CCcHHHHHHHHHHHhcCCEEEEEcCCCCcHH--HHHHHHHHhccccCCCeEEEEeCchHHHHH--HHHHHHHHHhCCeee
Q 006122 49 LPVYKYRTAILYLVETHATTIIVGETGSGKT--TQIPQYLKEAGWADGGRVIACTQPRRLAVQ--AVASRVAEEMGVKVG 124 (660)
Q Consensus 49 lPi~~~~~~i~~~l~~~~~vii~apTGsGKT--~~ip~~l~~~~~~~~~~~i~v~p~r~la~~--~~~~~~~~~~~~~~~ 124 (660)
-| +..|...+-.+.+|+ |..+.||+||| +.+|.++... .+.++++++|++.||.| .+...+.+.+|.+++
T Consensus 79 ~P-t~VQ~~~ip~LlqG~--IaeakTGeGKTLvf~Lp~~L~aL---~G~qv~VvTPTreLA~Qdae~m~~l~~~lGLsv~ 152 (997)
T 2ipc_A 79 RH-FDVQLIGGAVLHEGK--IAEMKTGEGKTLVATLAVALNAL---TGKGVHVVTVNDYLARRDAEWMGPVYRGLGLSVG 152 (997)
T ss_dssp CC-CHHHHHHHHHHHTTS--EEECCSTHHHHHHHHHHHHHHHT---TCSCCEEEESSHHHHHHHHHHHHHHHHTTTCCEE
T ss_pred CC-cHHHHhhcccccCCc--eeeccCCCchHHHHHHHHHHHHH---hCCCEEEEeCCHHHHHHHHHHHHHHHHhcCCeEE
Confidence 45 444555555566677 99999999999 5566654333 34568999999999988 556678888899998
Q ss_pred eEEeeeeeccccCCCCCceEEEechHHH-HHHHhcC-------CCCC---CCcEEEEeCCC
Q 006122 125 EEVGYTIRFEDFTNKDLTAIKFLTDGVL-LREMMDD-------PLLT---KYSVIMVDEAH 174 (660)
Q Consensus 125 ~~vg~~~~~~~~~~~~~~~I~v~T~~~l-l~~l~~~-------~~l~---~~~~iIiDE~H 174 (660)
..+|........... .++|+|+||+.| ++.+..+ ..++ ++.++||||+|
T Consensus 153 ~i~Gg~~~~~r~~ay-~~DIvyGTpgrlgfDyLrd~m~~~~~~l~~r~d~~l~~lIIDEaD 212 (997)
T 2ipc_A 153 VIQHASTPAERRKAY-LADVTYVTNSELGFDYLRDNMAISPDQLVLRHDHPLHYAIIDEVD 212 (997)
T ss_dssp ECCTTCCHHHHHHHH-TSSEEEEEHHHHHHHHHHHTSCSSTTTCCSCSSSSSCEEEETTHH
T ss_pred EEeCCCCHHHHHHHc-CCCEEEECchhhhhHHHHHhhhcchhhcccccCCCcceEEEechH
Confidence 888744322222223 589999999999 6776544 2367 89999999999
No 88
>3b6e_A Interferon-induced helicase C domain-containing P; DECH, DEXD/H RNA-binding helicase, innate immunity, IFIH1, S genomics; 1.60A {Homo sapiens}
Probab=99.67 E-value=8.5e-17 Score=156.48 Aligned_cols=159 Identities=19% Similarity=0.144 Sum_probs=103.4
Q ss_pred HhcCCCcHHHHHHHHHHHhcCCEEEEEcCCCCcHHHHHHHHHHhccc-----cCCCeEEEEeCchHHHHHHHHHHHHHHh
Q 006122 45 QRQRLPVYKYRTAILYLVETHATTIIVGETGSGKTTQIPQYLKEAGW-----ADGGRVIACTQPRRLAVQAVASRVAEEM 119 (660)
Q Consensus 45 ~~~~lPi~~~~~~i~~~l~~~~~vii~apTGsGKT~~ip~~l~~~~~-----~~~~~~i~v~p~r~la~~~~~~~~~~~~ 119 (660)
....++.+++|.++++.+.+++++++.+|||+|||++....+..... ..+.++++++|++.++.|.+.+.+.+..
T Consensus 28 ~~~~~~l~~~Q~~~i~~~~~~~~~li~~~tGsGKT~~~~~~~~~~~~~~~~~~~~~~~lil~p~~~L~~q~~~~~~~~~~ 107 (216)
T 3b6e_A 28 PEPELQLRPYQMEVAQPALEGKNIIICLPTGSGKTRVAVYIAKDHLDKKKKASEPGKVIVLVNKVLLVEQLFRKEFQPFL 107 (216)
T ss_dssp CSCCCCCCHHHHHHHHHHHTTCCEEEECSCHHHHHHHHHHHHHHHHHHHHHTTCCCCEEEEESSHHHHHHHHHHTHHHHH
T ss_pred ccCCCCchHHHHHHHHHHhcCCCEEEEcCCCCCHHHHHHHHHHHHHhhcccccCCCcEEEEECHHHHHHHHHHHHHHHHh
Confidence 34567899999999999999999999999999999655444433211 1246789999999998876666655544
Q ss_pred --CCeeeeEEeeeeeccc--cCCCCCceEEEechHHHHHHHhcC-------CCCCCCcEEEEeCCCcCCcChhHHHHHHH
Q 006122 120 --GVKVGEEVGYTIRFED--FTNKDLTAIKFLTDGVLLREMMDD-------PLLTKYSVIMVDEAHERSISTDILLGLLK 188 (660)
Q Consensus 120 --~~~~~~~vg~~~~~~~--~~~~~~~~I~v~T~~~ll~~l~~~-------~~l~~~~~iIiDE~Her~~~~d~ll~~l~ 188 (660)
+..++...|....... .... ..+|+|+||+.+.+.+... ..+.++++||+||||.. ....+...++.
T Consensus 108 ~~~~~v~~~~g~~~~~~~~~~~~~-~~~i~v~T~~~l~~~~~~~~~~~~~~~~~~~~~~iIiDEah~~-~~~~~~~~~~~ 185 (216)
T 3b6e_A 108 KKWYRVIGLSGDTQLKISFPEVVK-SCDIIISTAQILENSLLNLENGEDAGVQLSDFSLIIIDECHHT-NKEAVYNNIMR 185 (216)
T ss_dssp TTTSCEEECCC---CCCCHHHHHH-HCSEEEEEHHHHHHHHHC-------CCCGGGCSEEEETTC--------CHHHHHH
T ss_pred ccCceEEEEeCCcccchhHHhhcc-CCCEEEECHHHHHHHHhccCcccccccchhcccEEEEECchhh-ccCCcHHHHHH
Confidence 3455444442211110 0111 4789999999999888664 34788999999999943 33333333333
Q ss_pred HHHHhc--------------CCceEEEeecc
Q 006122 189 KIQRCR--------------SDLRLIISSAT 205 (660)
Q Consensus 189 ~~~~~~--------------~~~kii~~SAT 205 (660)
.+.... ++.++|+||||
T Consensus 186 ~~~~~~~~~~~~~~~~~~~~~~~~~l~lSAT 216 (216)
T 3b6e_A 186 HYLMQKLKNNRLKKENKPVIPLPQILGLTAS 216 (216)
T ss_dssp HHHHHHHHHHHHHHTTCCCCCCCEEEEEECC
T ss_pred HHHHHhcccccccccccCCCCcceEEEeecC
Confidence 332221 67899999998
No 89
>2vl7_A XPD; helicase, unknown function; 2.25A {Sulfolobus tokodaii}
Probab=99.63 E-value=1.9e-15 Score=167.42 Aligned_cols=128 Identities=16% Similarity=0.186 Sum_probs=71.8
Q ss_pred HHHHHHHHHHHhcCCCCcEEEEcCCHHHHHHHHHHHHHHhhhccCCCCCeEEEEccCCCCHHHHhhhcCCCCCCCcEEEE
Q 006122 261 QAAVSTVLLIHDKEPPGDILVFLTGQDDIDATIQLLTEEARTSKKNSSGLIILPLYSGLSRAEQEQVFSPTPRGKRKVVI 340 (660)
Q Consensus 261 ~~~~~~~~~~~~~~~~~~iLVF~~~~~~i~~l~~~L~~~~~~~~~~~~~~~v~~lh~~l~~~~r~~v~~~f~~g~~~vlv 340 (660)
......+..+... .+|.+|||+||....+.+++.+.+ ..+ ..++.. .++.++++.|++|. .|++
T Consensus 370 ~~~~~~l~~~~~~-~~g~~lvff~S~~~~~~v~~~l~~-----------~~~-~~q~~~--~~~~~~l~~f~~~~-~il~ 433 (540)
T 2vl7_A 370 PIYSILLKRIYEN-SSKSVLVFFPSYEMLESVRIHLSG-----------IPV-IEENKK--TRHEEVLELMKTGK-YLVM 433 (540)
T ss_dssp HHHHHHHHHHHHT-CSSEEEEEESCHHHHHHHHTTCTT-----------SCE-EESTTT--CCHHHHHHHHHTSC-CEEE
T ss_pred HHHHHHHHHHHHh-CCCCEEEEeCCHHHHHHHHHHhcc-----------Cce-EecCCC--CcHHHHHHHHhcCC-eEEE
Confidence 4444555555543 567899999999999998876632 222 334443 35667777787654 5666
Q ss_pred --eCCCcccccCCCC----eEEEEeCCCccceeecCC-------------CCcccceeeecCHHhHHHhhcccCCC--CC
Q 006122 341 --STNIAETSLTLEG----IVYVVDSGFSKQRFYNPI-------------SDIENLVVAPISKASARQRAGRAGRV--RP 399 (660)
Q Consensus 341 --aT~i~e~Gidip~----v~~VId~g~~k~~~~~~~-------------~~~~~l~~~~~s~~~~~QR~GRaGR~--~~ 399 (660)
+|..+.+|||+|+ +++||..|+.....-|+. .+...+. .+.......|.+||+-|. ..
T Consensus 434 ~V~~~~~~EGiD~~~~~~~~~~Vii~~lPf~~~~d~~~~~r~~~~~~~~~~~~~~~~-~~~~~~~~~Q~~GR~iR~~~D~ 512 (540)
T 2vl7_A 434 LVMRAKESEGVEFREKENLFESLVLAGLPYPNVSDDMVRKRIERLSKLTGKDEDSII-HDLTAIVIKQTIGRAFRDPNDY 512 (540)
T ss_dssp EEC---------------CEEEEEEESCCCCCTTSHHHHHHHHHHHHHHTCCHHHHH-HHHHHHHHHHHHHHHCCSTTCC
T ss_pred EEecCceecceecCCCcccccEEEEECCCCCCCCCHHHHHHHHHHHHhhCCChhHHH-HHHHHHHHHHHhCCcccCCCcc
Confidence 8999999999998 899999998643322221 0111111 122367788999999997 45
Q ss_pred cEEEEc
Q 006122 400 GKCYRL 405 (660)
Q Consensus 400 G~~~~l 405 (660)
|..+.+
T Consensus 513 g~v~ll 518 (540)
T 2vl7_A 513 VKIYLC 518 (540)
T ss_dssp CEEEEE
T ss_pred EEEEEE
Confidence 654433
No 90
>1rif_A DAR protein, DNA helicase UVSW; bacteriophage, RECG, SF2, DNA binding protein; HET: DNA; 2.00A {Enterobacteria phage T4} SCOP: c.37.1.23
Probab=99.50 E-value=3.4e-14 Score=144.29 Aligned_cols=147 Identities=11% Similarity=0.069 Sum_probs=94.1
Q ss_pred CCcHHHHHHHHHHHhcCCEEEEEcCCCCcHHHHHHHHHHhccccCCCeEEEEeCchHHHHHHHHHHHHHHhCC---eeee
Q 006122 49 LPVYKYRTAILYLVETHATTIIVGETGSGKTTQIPQYLKEAGWADGGRVIACTQPRRLAVQAVASRVAEEMGV---KVGE 125 (660)
Q Consensus 49 lPi~~~~~~i~~~l~~~~~vii~apTGsGKT~~ip~~l~~~~~~~~~~~i~v~p~r~la~~~~~~~~~~~~~~---~~~~ 125 (660)
+..+.+|.+.+..+..++..++++|||+|||.++..++........+++++++|++.|+.| +.+.+.+.... .++.
T Consensus 112 ~~l~~~Q~~ai~~~l~~~~~ll~~~tGsGKT~~~~~~~~~~~~~~~~~~lil~Pt~~L~~q-~~~~l~~~~~~~~~~~~~ 190 (282)
T 1rif_A 112 IEPHWYQKDAVFEGLVNRRRILNLPTSAGRSLIQALLARYYLENYEGKILIIVPTTALTTQ-MADDFVDYRLFSHAMIKK 190 (282)
T ss_dssp CCCCHHHHHHHHHHHHHSEEEECCCTTSCHHHHHHHHHHHHHHHCSSEEEEECSSHHHHHH-HHHHHHHHTSCCGGGEEE
T ss_pred cCccHHHHHHHHHHHhcCCeEEEcCCCCCcHHHHHHHHHHHHHcCCCeEEEEECCHHHHHH-HHHHHHHhcccccceEEE
Confidence 4678889999988777777899999999999665444443222233478999999888775 44445544322 2222
Q ss_pred EEeeeeeccccCCCCCceEEEechHHHHHHHhcCCCCCCCcEEEEeCCCcCCcChhHHHHHHHHHHH-hcCCceEEEeec
Q 006122 126 EVGYTIRFEDFTNKDLTAIKFLTDGVLLREMMDDPLLTKYSVIMVDEAHERSISTDILLGLLKKIQR-CRSDLRLIISSA 204 (660)
Q Consensus 126 ~vg~~~~~~~~~~~~~~~I~v~T~~~ll~~l~~~~~l~~~~~iIiDE~Her~~~~d~ll~~l~~~~~-~~~~~kii~~SA 204 (660)
..|.....+ .... ..+|+|+|++.+.+.. ...+.++++||+||||. ... + .+..+.. ..+..+++++||
T Consensus 191 ~~~~~~~~~-~~~~-~~~I~v~T~~~l~~~~--~~~~~~~~~vIiDEaH~-~~~-~----~~~~il~~~~~~~~~l~lSA 260 (282)
T 1rif_A 191 IGGGASKDD-KYKN-DAPVVVGTWQTVVKQP--KEWFSQFGMMMNDECHL-ATG-K----SISSIISGLNNCMFKFGLSG 260 (282)
T ss_dssp CSTTCSSTT-CCCT-TCSEEEECHHHHTTSC--GGGGGGEEEEEEETGGG-CCH-H----HHHHHTTTCTTCCEEEEECS
T ss_pred EeCCCcchh-hhcc-CCcEEEEchHHHHhhH--HHHHhhCCEEEEECCcc-CCc-c----cHHHHHHHhhcCCeEEEEeC
Confidence 222111111 1113 6899999999876431 12367889999999994 332 2 2223322 346789999999
Q ss_pred cc
Q 006122 205 TI 206 (660)
Q Consensus 205 T~ 206 (660)
|+
T Consensus 261 Tp 262 (282)
T 1rif_A 261 SL 262 (282)
T ss_dssp SC
T ss_pred CC
Confidence 99
No 91
>3crv_A XPD/RAD3 related DNA helicase; XPD helicase DNA repair cancer aging, hydrolase; HET: FLC; 2.00A {Sulfolobus acidocaldarius} PDB: 3crw_1*
Probab=99.47 E-value=1.9e-12 Score=143.81 Aligned_cols=123 Identities=18% Similarity=0.108 Sum_probs=79.7
Q ss_pred hHHHHHHHHHHHHHhcCCCCcEEEEcCCHHHHHHHHHHHHHHhhhccCCCCCeEEEEccCCCCHHHHhhhcCCCCCCCcE
Q 006122 258 DYVQAAVSTVLLIHDKEPPGDILVFLTGQDDIDATIQLLTEEARTSKKNSSGLIILPLYSGLSRAEQEQVFSPTPRGKRK 337 (660)
Q Consensus 258 ~~~~~~~~~~~~~~~~~~~~~iLVF~~~~~~i~~l~~~L~~~~~~~~~~~~~~~v~~lh~~l~~~~r~~v~~~f~~g~~~ 337 (660)
++.+.....+..+... .+|.+|||+||....+.+++. .+..+..-..+++.++..+.++ .++ .-
T Consensus 376 ~~~~~l~~~i~~l~~~-~~g~~lvlF~Sy~~l~~v~~~------------~~~~v~~q~~~~~~~~~~~~~~--~~~-~~ 439 (551)
T 3crv_A 376 NMWKRYADYLLKIYFQ-AKANVLVVFPSYEIMDRVMSR------------ISLPKYVESEDSSVEDLYSAIS--ANN-KV 439 (551)
T ss_dssp HHHHHHHHHHHHHHHH-CSSEEEEEESCHHHHHHHHTT------------CCSSEEECCSSCCHHHHHHHTT--SSS-SC
T ss_pred HHHHHHHHHHHHHHHh-CCCCEEEEecCHHHHHHHHHh------------cCCcEEEcCCCCCHHHHHHHHH--hcC-Ce
Confidence 3455666666666654 567899999999998888752 1334444444556555555554 233 47
Q ss_pred EEEeC--CCcccccCCC-----CeEEEEeCCCccceeecC-----------CCCcccc---eeeecCHHhHHHhhcccCC
Q 006122 338 VVIST--NIAETSLTLE-----GIVYVVDSGFSKQRFYNP-----------ISDIENL---VVAPISKASARQRAGRAGR 396 (660)
Q Consensus 338 vlvaT--~i~e~Gidip-----~v~~VId~g~~k~~~~~~-----------~~~~~~l---~~~~~s~~~~~QR~GRaGR 396 (660)
|++|| ....+|||+| ..+.||-.|+.-... || ..|...+ ...| ......|-+||+=|
T Consensus 440 vl~~v~gg~~~EGiD~~d~~g~~l~~viI~~lPfp~~-dp~~~ar~~~~~~~~g~~~~~~~y~~p-a~~~l~Qa~GRlIR 517 (551)
T 3crv_A 440 LIGSVGKGKLAEGIELRNNDRSLISDVVIVGIPYPPP-DDYLKILAQRVSLKMNRENEEFLFKIP-ALVTIKQAIGRAIR 517 (551)
T ss_dssp EEEEESSCCSCCSSCCEETTEESEEEEEEESCCCCCC-SHHHHHHHHHTTCCSSTTTHHHHTHHH-HHHHHHHHHHTTCC
T ss_pred EEEEEecceecccccccccCCcceeEEEEEcCCCCCC-CHHHHHHHHHHHHhhCCchhHHHHHHH-HHHHHHHHhccCcc
Confidence 99998 6999999999 377888778754433 33 2122111 2234 67778899999999
Q ss_pred CC
Q 006122 397 VR 398 (660)
Q Consensus 397 ~~ 398 (660)
..
T Consensus 518 ~~ 519 (551)
T 3crv_A 518 DV 519 (551)
T ss_dssp ST
T ss_pred CC
Confidence 83
No 92
>2fz4_A DNA repair protein RAD25; RECA-like domain, DNA damage recognition domain, DNA binding; HET: DNA; 2.40A {Archaeoglobus fulgidus} SCOP: c.37.1.19
Probab=99.45 E-value=8.7e-13 Score=129.95 Aligned_cols=137 Identities=22% Similarity=0.203 Sum_probs=97.8
Q ss_pred CCcHHHHHHHHHHHhcCCEEEEEcCCCCcHHHHHHHHHHhccccCCCeEEEEeCchHHHHHHHHHHHHHHhCCe-eeeEE
Q 006122 49 LPVYKYRTAILYLVETHATTIIVGETGSGKTTQIPQYLKEAGWADGGRVIACTQPRRLAVQAVASRVAEEMGVK-VGEEV 127 (660)
Q Consensus 49 lPi~~~~~~i~~~l~~~~~vii~apTGsGKT~~ip~~l~~~~~~~~~~~i~v~p~r~la~~~~~~~~~~~~~~~-~~~~v 127 (660)
.....+|.+++..+.+++.+++++|||+|||.++..++... +.++++++|++.|+.| +.+.+.+ ++.. ++...
T Consensus 92 ~~l~~~Q~~ai~~~~~~~~~ll~~~tG~GKT~~a~~~~~~~----~~~~liv~P~~~L~~q-~~~~~~~-~~~~~v~~~~ 165 (237)
T 2fz4_A 92 ISLRDYQEKALERWLVDKRGCIVLPTGSGKTHVAMAAINEL----STPTLIVVPTLALAEQ-WKERLGI-FGEEYVGEFS 165 (237)
T ss_dssp CCCCHHHHHHHHHHTTTSEEEEEESSSTTHHHHHHHHHHHS----CSCEEEEESSHHHHHH-HHHHHGG-GCGGGEEEES
T ss_pred CCcCHHHHHHHHHHHhCCCEEEEeCCCCCHHHHHHHHHHHc----CCCEEEEeCCHHHHHH-HHHHHHh-CCCCeEEEEe
Confidence 45788999999999888889999999999997766555543 4568899999888765 4444444 6665 55444
Q ss_pred eeeeeccccCCCCCceEEEechHHHHHHHhcCCCCCCCcEEEEeCCCcCCcChhHHHHHHHHHHHhcCCceEEEeecccc
Q 006122 128 GYTIRFEDFTNKDLTAIKFLTDGVLLREMMDDPLLTKYSVIMVDEAHERSISTDILLGLLKKIQRCRSDLRLIISSATIE 207 (660)
Q Consensus 128 g~~~~~~~~~~~~~~~I~v~T~~~ll~~l~~~~~l~~~~~iIiDE~Her~~~~d~ll~~l~~~~~~~~~~kii~~SAT~~ 207 (660)
|.. .. ..+|+++|++.+.+.... ...++++|||||+|.. .+.. .+.+....+..+++++|||+.
T Consensus 166 g~~-------~~-~~~i~v~T~~~l~~~~~~--~~~~~~llIiDEaH~l-~~~~-----~~~i~~~~~~~~~l~LSATp~ 229 (237)
T 2fz4_A 166 GRI-------KE-LKPLTVSTYDSAYVNAEK--LGNRFMLLIFDEVHHL-PAES-----YVQIAQMSIAPFRLGLTATFE 229 (237)
T ss_dssp SSC-------BC-CCSEEEEEHHHHHHTHHH--HTTTCSEEEEECSSCC-CTTT-----HHHHHHTCCCSEEEEEEESCC
T ss_pred CCC-------CC-cCCEEEEeHHHHHhhHHH--hcccCCEEEEECCccC-CChH-----HHHHHHhccCCEEEEEecCCC
Confidence 421 12 578999999998765432 1356899999999943 3222 233444556788999999984
No 93
>1z5z_A Helicase of the SNF2/RAD54 family; hydrolase, recombination, hydrolase-recombination complex; 2.00A {Sulfolobus solfataricus} SCOP: c.37.1.19
Probab=99.36 E-value=4.5e-13 Score=134.42 Aligned_cols=113 Identities=19% Similarity=0.161 Sum_probs=86.5
Q ss_pred CCCcEEEEcCCHHHHHHHHHHHHHHhhhccCCCCCeEEEEccCCCCHHHHhhhcCCCCCC-CcE-EEEeCCCcccccCCC
Q 006122 275 PPGDILVFLTGQDDIDATIQLLTEEARTSKKNSSGLIILPLYSGLSRAEQEQVFSPTPRG-KRK-VVISTNIAETSLTLE 352 (660)
Q Consensus 275 ~~~~iLVF~~~~~~i~~l~~~L~~~~~~~~~~~~~~~v~~lh~~l~~~~r~~v~~~f~~g-~~~-vlvaT~i~e~Gidip 352 (660)
.+.++|||+.....++.+...|.+.. ++.+..+||+++.++|.++++.|++| ..+ +|++|+++++|+|++
T Consensus 111 ~~~kvlIFs~~~~~~~~l~~~L~~~~--------g~~~~~l~G~~~~~~R~~~i~~F~~~~~~~v~L~st~~~g~Glnl~ 182 (271)
T 1z5z_A 111 EGDKIAIFTQFVDMGKIIRNIIEKEL--------NTEVPFLYGELSKKERDDIISKFQNNPSVKFIVLSVKAGGFGINLT 182 (271)
T ss_dssp TTCCEEEEESCHHHHHHHHHHHHHHH--------CSCCCEECTTSCHHHHHHHHHHHHHCTTCCEEEEECCTTCCCCCCT
T ss_pred CCCeEEEEeccHHHHHHHHHHHHHhc--------CCcEEEEECCCCHHHHHHHHHHhcCCCCCCEEEEehhhhcCCcCcc
Confidence 46789999999999999999998743 56688899999999999999999988 666 799999999999999
Q ss_pred CeEEEEeCCCccceeecCCCCcccceeeecCHHhHHHhhcccCCC---CCcEEEEccChHHhhh
Q 006122 353 GIVYVVDSGFSKQRFYNPISDIENLVVAPISKASARQRAGRAGRV---RPGKCYRLYTEEYFVK 413 (660)
Q Consensus 353 ~v~~VId~g~~k~~~~~~~~~~~~l~~~~~s~~~~~QR~GRaGR~---~~G~~~~l~~~~~~~~ 413 (660)
++++||+++. |.+.+.+.||+||++|. ++..+|+++++...+.
T Consensus 183 ~a~~VI~~d~------------------~wnp~~~~Q~~gR~~R~Gq~~~v~v~~li~~~TiEe 228 (271)
T 1z5z_A 183 SANRVIHFDR------------------WWNPAVEDQATDRVYRIGQTRNVIVHKLISVGTLEE 228 (271)
T ss_dssp TCSEEEECSC------------------CSCTTTC--------------CCEEEEEEETTSHHH
T ss_pred cCCEEEEECC------------------CCChhHHHHHHHhccccCCCCceEEEEEeeCCCHHH
Confidence 9999999665 66667777999999998 4456789988765544
No 94
>4a15_A XPD helicase, ATP-dependent DNA helicase TA0057; hydrolase, nucleotide excision repair,; 2.20A {Thermoplasma acidophilum} PDB: 2vsf_A*
Probab=99.18 E-value=3.9e-10 Score=126.24 Aligned_cols=132 Identities=17% Similarity=0.242 Sum_probs=77.8
Q ss_pred HHHHHHHHHHHHHhcCCCCcEEEEcCCHHHHHHHHHHHHHHhhhccCCCCCeEEEEccCCCCHHHHhhhcCCCCCCCcEE
Q 006122 259 YVQAAVSTVLLIHDKEPPGDILVFLTGQDDIDATIQLLTEEARTSKKNSSGLIILPLYSGLSRAEQEQVFSPTPRGKRKV 338 (660)
Q Consensus 259 ~~~~~~~~~~~~~~~~~~~~iLVF~~~~~~i~~l~~~L~~~~~~~~~~~~~~~v~~lh~~l~~~~r~~v~~~f~~g~~~v 338 (660)
+.......+..+... .+|.+|||+||....+.+++.+. . .+.. ...+++..++..+++.|+ +...|
T Consensus 432 ~~~~~~~~i~~l~~~-~~g~~lvlF~Sy~~l~~v~~~l~-~--------~~~~---~~q~~~~~~~~~ll~~f~-~~~~v 497 (620)
T 4a15_A 432 ELDRMATVIEDIILK-VKKNTIVYFPSYSLMDRVENRVS-F--------EHMK---EYRGIDQKELYSMLKKFR-RDHGT 497 (620)
T ss_dssp HHHHHHHHHHHHHHH-HCSCEEEEESCHHHHHHHTSSCC-S--------CCEE---CCTTCCSHHHHHHHHHHT-TSCCE
T ss_pred HHHHHHHHHHHHHHh-CCCCEEEEeCCHHHHHHHHHHHH-h--------cchh---ccCCCChhHHHHHHHHhc-cCCcE
Confidence 344455555555554 45679999999999988877764 1 1222 444555667888888888 88889
Q ss_pred EEeCC--CcccccCCCC--eEEEEeCCCcccee----------ecCC--CCcccceeeecCHHhHHHhhcccCCC--CCc
Q 006122 339 VISTN--IAETSLTLEG--IVYVVDSGFSKQRF----------YNPI--SDIENLVVAPISKASARQRAGRAGRV--RPG 400 (660)
Q Consensus 339 lvaT~--i~e~Gidip~--v~~VId~g~~k~~~----------~~~~--~~~~~l~~~~~s~~~~~QR~GRaGR~--~~G 400 (660)
+++|. .+.+|||+|+ .+.||-.|+.-... ++.. .+...-...| ......|-+||+=|. ..|
T Consensus 498 L~~v~~gsf~EGiD~~g~~l~~viI~~lPfp~~~p~~~ar~~~~~~~~g~~~~~~y~~p-a~~~l~Qa~GRlIR~~~D~G 576 (620)
T 4a15_A 498 IFAVSGGRLSEGINFPGNELEMIILAGLPFPRPDAINRSLFDYYERKYGKGWEYSVVYP-TAIKIRQEIGRLIRSAEDTG 576 (620)
T ss_dssp EEEETTSCC--------CCCCEEEESSCCCCCCCHHHHHHHHHHHHHHSCHHHHHTHHH-HHHHHHHHHHTTCCSTTCCE
T ss_pred EEEEecCceeccccCCCCceEEEEEEcCCCCCCCHHHHHHHHHHHHhhCCCchHHhHHH-HHHHHHHHhCccccCCCceE
Confidence 99974 8999999986 55788777753221 1111 1111001123 456778999999997 456
Q ss_pred EEEEc
Q 006122 401 KCYRL 405 (660)
Q Consensus 401 ~~~~l 405 (660)
..+.+
T Consensus 577 ~v~ll 581 (620)
T 4a15_A 577 ACVIL 581 (620)
T ss_dssp EEEEE
T ss_pred EEEEE
Confidence 54443
No 95
>1w36_D RECD, exodeoxyribonuclease V alpha chain; recombination, helicase, hydrolase, DNA repair; HET: DNA; 3.1A {Escherichia coli} SCOP: c.37.1.19 c.37.1.19 PDB: 3k70_D*
Probab=98.14 E-value=9.6e-06 Score=90.61 Aligned_cols=141 Identities=16% Similarity=0.177 Sum_probs=70.4
Q ss_pred HHHHHHHHHHhcCCEEEEEcCCCCcHHHHHHHHHHhcc---ccCCCeEEEEeCchHHHHHHHHHH---HHHHhCCeeeeE
Q 006122 53 KYRTAILYLVETHATTIIVGETGSGKTTQIPQYLKEAG---WADGGRVIACTQPRRLAVQAVASR---VAEEMGVKVGEE 126 (660)
Q Consensus 53 ~~~~~i~~~l~~~~~vii~apTGsGKT~~ip~~l~~~~---~~~~~~~i~v~p~r~la~~~~~~~---~~~~~~~~~~~~ 126 (660)
..|++++..+..+++++++|++||||||.+-.++.... ...+.++++++|+.+.+.+ +.+. ....++......
T Consensus 152 ~~Q~~Ai~~~l~~~~~vi~G~pGTGKTt~l~~ll~~l~~~~~~~~~~vll~APTg~AA~~-L~e~~~~~~~~l~l~~~~~ 230 (608)
T 1w36_D 152 NWQKVAAAVALTRRISVISGGPGTGKTTTVAKLLAALIQMADGERCRIRLAAPTGKAAAR-LTESLGKALRQLPLTDEQK 230 (608)
T ss_dssp CHHHHHHHHHHTBSEEEEECCTTSTHHHHHHHHHHHHHHTCSSCCCCEEEEBSSHHHHHH-HHHHHTHHHHHSSCCSCCC
T ss_pred HHHHHHHHHHhcCCCEEEEeCCCCCHHHHHHHHHHHHHHhhhcCCCeEEEEeCChhHHHH-HHHHHHHHHhcCCCCHHHH
Confidence 34666666666889999999999999977654433221 1234467888888877654 3222 222332211000
Q ss_pred EeeeeeccccCCCCCceEEEechHHHHHHHhcCCCCCCCcEEEEeCCCcCCcChhHHHHHHHHHHHhcCCceEEEeecc
Q 006122 127 VGYTIRFEDFTNKDLTAIKFLTDGVLLREMMDDPLLTKYSVIMVDEAHERSISTDILLGLLKKIQRCRSDLRLIISSAT 205 (660)
Q Consensus 127 vg~~~~~~~~~~~~~~~I~v~T~~~ll~~l~~~~~l~~~~~iIiDE~Her~~~~d~ll~~l~~~~~~~~~~kii~~SAT 205 (660)
..+..+.. . -..++-.+++... .........++++|||||++ +++.+.+..+++ ....+.|+|++.=.
T Consensus 231 --~~~~~~~~-T--ih~ll~~~~~~~~-~~~~~~~~l~~d~lIIDEAs--ml~~~~~~~Ll~---~l~~~~~liLvGD~ 298 (608)
T 1w36_D 231 --KRIPEDAS-T--LHRLLGAQPGSQR-LRHHAGNPLHLDVLVVDEAS--MIDLPMMSRLID---ALPDHARVIFLGDR 298 (608)
T ss_dssp --CSCSCCCB-T--TTSCC------------CTTSCCSCSEEEECSGG--GCBHHHHHHHHH---TCCTTCEEEEEECT
T ss_pred --hccchhhh-h--hHhhhccCCCchH-HHhccCCCCCCCEEEEechh--hCCHHHHHHHHH---hCCCCCEEEEEcch
Confidence 00000000 0 0112222232210 01111122378999999999 455444444433 23556788887644
No 96
>3upu_A ATP-dependent DNA helicase DDA; RECA-like domain, SH3 domain, PIN-tower interface, coupling hydrolysis to DNA unwinding, ssDNA; 3.30A {Enterobacteria phage T4}
Probab=97.75 E-value=8.5e-05 Score=80.17 Aligned_cols=57 Identities=14% Similarity=0.125 Sum_probs=36.9
Q ss_pred cHHHHHHHHHHHh----cC-CEEEEEcCCCCcHHHHHHHHHHhccccCCCeEEEEeCchHHH
Q 006122 51 VYKYRTAILYLVE----TH-ATTIIVGETGSGKTTQIPQYLKEAGWADGGRVIACTQPRRLA 107 (660)
Q Consensus 51 i~~~~~~i~~~l~----~~-~~vii~apTGsGKT~~ip~~l~~~~~~~~~~~i~v~p~r~la 107 (660)
+...|++++..+. ++ .+++|.|+.|||||+++-.++..........+++++|+...+
T Consensus 26 Ln~~Q~~av~~~~~~i~~~~~~~li~G~aGTGKT~ll~~~~~~l~~~~~~~il~~a~T~~Aa 87 (459)
T 3upu_A 26 LTEGQKNAFNIVMKAIKEKKHHVTINGPAGTGATTLTKFIIEALISTGETGIILAAPTHAAK 87 (459)
T ss_dssp CCHHHHHHHHHHHHHHHSSSCEEEEECCTTSCHHHHHHHHHHHHHHTTCCCEEEEESSHHHH
T ss_pred CCHHHHHHHHHHHHHHhcCCCEEEEEeCCCCCHHHHHHHHHHHHHhcCCceEEEecCcHHHH
Confidence 5556666666543 23 499999999999998876555444222223567777776543
No 97
>3e1s_A Exodeoxyribonuclease V, subunit RECD; alpha and beta protein, ATP-binding, nucleotide-binding, HYD; 2.20A {Deinococcus radiodurans} PDB: 3gp8_A 3gpl_A*
Probab=97.74 E-value=6.3e-05 Score=83.16 Aligned_cols=59 Identities=20% Similarity=0.236 Sum_probs=45.0
Q ss_pred CCcHHHHHHHHHHHhcCCEEEEEcCCCCcHHHHHHHHHHhccccCCCeEEEEeCchHHHH
Q 006122 49 LPVYKYRTAILYLVETHATTIIVGETGSGKTTQIPQYLKEAGWADGGRVIACTQPRRLAV 108 (660)
Q Consensus 49 lPi~~~~~~i~~~l~~~~~vii~apTGsGKT~~ip~~l~~~~~~~~~~~i~v~p~r~la~ 108 (660)
..+...|.+++..+.++++++|.|+.||||||++-.++... ...+.++++++|+.+.+.
T Consensus 188 ~~L~~~Q~~Av~~~~~~~~~~I~G~pGTGKTt~i~~l~~~l-~~~g~~Vl~~ApT~~Aa~ 246 (574)
T 3e1s_A 188 KGLSEEQASVLDQLAGHRLVVLTGGPGTGKSTTTKAVADLA-ESLGLEVGLCAPTGKAAR 246 (574)
T ss_dssp TTCCHHHHHHHHHHTTCSEEEEECCTTSCHHHHHHHHHHHH-HHTTCCEEEEESSHHHHH
T ss_pred CCCCHHHHHHHHHHHhCCEEEEEcCCCCCHHHHHHHHHHHH-HhcCCeEEEecCcHHHHH
Confidence 45678888999988889999999999999998876555433 234566788888865543
No 98
>2b8t_A Thymidine kinase; deoxyribonucleoside kinase, zinc-binding domain, TK1, UU-TK, transferase; HET: THM; 2.00A {Ureaplasma parvum} SCOP: c.37.1.24 g.39.1.14 PDB: 2uz3_A*
Probab=97.54 E-value=0.00051 Score=65.88 Aligned_cols=115 Identities=16% Similarity=0.208 Sum_probs=64.9
Q ss_pred hcCCEEEEEcCCCCcHHHHHHHHHHhccccCCCeEEEEeCchHHHHHHHHHHHHHHhCCeeeeEEeeeeeccccCCCCCc
Q 006122 63 ETHATTIIVGETGSGKTTQIPQYLKEAGWADGGRVIACTQPRRLAVQAVASRVAEEMGVKVGEEVGYTIRFEDFTNKDLT 142 (660)
Q Consensus 63 ~~~~~vii~apTGsGKT~~ip~~l~~~~~~~~~~~i~v~p~r~la~~~~~~~~~~~~~~~~~~~vg~~~~~~~~~~~~~~ 142 (660)
..+..+++.|++|+||||.+.+.+..... .+.+++++.+...- + . + ..+....|. . ..
T Consensus 10 ~~G~i~litG~mGsGKTT~ll~~~~r~~~-~g~kVli~~~~~d~-------r-~-~--~~i~srlG~---------~-~~ 67 (223)
T 2b8t_A 10 KIGWIEFITGPMFAGKTAELIRRLHRLEY-ADVKYLVFKPKIDT-------R-S-I--RNIQSRTGT---------S-LP 67 (223)
T ss_dssp -CCEEEEEECSTTSCHHHHHHHHHHHHHH-TTCCEEEEEECCCG-------G-G-C--SSCCCCCCC---------S-SC
T ss_pred CCcEEEEEECCCCCcHHHHHHHHHHHHHh-cCCEEEEEEeccCc-------h-H-H--HHHHHhcCC---------C-cc
Confidence 35678899999999999998888776632 34556666554310 0 0 0 011111110 0 11
Q ss_pred eEEEechHHHHHHHhcCCCCCCCcEEEEeCCCcCCcChhHHHHHHHHHHHhcCCceEEEeec
Q 006122 143 AIKFLTDGVLLREMMDDPLLTKYSVIMVDEAHERSISTDILLGLLKKIQRCRSDLRLIISSA 204 (660)
Q Consensus 143 ~I~v~T~~~ll~~l~~~~~l~~~~~iIiDE~Her~~~~d~ll~~l~~~~~~~~~~kii~~SA 204 (660)
.+.+.+...+...+.....-.++++|||||++- +..+ ....+..+... +..+|+..-
T Consensus 68 ~~~~~~~~~i~~~i~~~~~~~~~dvViIDEaQ~--l~~~-~ve~l~~L~~~--gi~Vil~Gl 124 (223)
T 2b8t_A 68 SVEVESAPEILNYIMSNSFNDETKVIGIDEVQF--FDDR-ICEVANILAEN--GFVVIISGL 124 (223)
T ss_dssp CEEESSTHHHHHHHHSTTSCTTCCEEEECSGGG--SCTH-HHHHHHHHHHT--TCEEEEECC
T ss_pred ccccCCHHHHHHHHHHHhhCCCCCEEEEecCcc--CcHH-HHHHHHHHHhC--CCeEEEEec
Confidence 233456666776665543345689999999993 3333 33444554443 566665543
No 99
>3kl4_A SRP54, signal recognition 54 kDa protein; signal recognition particle, SRP, SRP54, FFH, signal sequenc peptide; 3.50A {Sulfolobus solfataricus} PDB: 1qzx_A 1qzw_A
Probab=97.47 E-value=0.00065 Score=71.81 Aligned_cols=133 Identities=23% Similarity=0.245 Sum_probs=77.1
Q ss_pred CEEEEEcCCCCcHHHHHHHHHHhccccCCCeE-EEEeCchHHHHHHHHHHHHHHhCCeeeeEEeeeeeccccCCCCCceE
Q 006122 66 ATTIIVGETGSGKTTQIPQYLKEAGWADGGRV-IACTQPRRLAVQAVASRVAEEMGVKVGEEVGYTIRFEDFTNKDLTAI 144 (660)
Q Consensus 66 ~~vii~apTGsGKT~~ip~~l~~~~~~~~~~~-i~v~p~r~la~~~~~~~~~~~~~~~~~~~vg~~~~~~~~~~~~~~~I 144 (660)
.+++++|++|+||||.+..+...... .+.++ ++-+.+.+.++.......+...+..+.. ....
T Consensus 98 ~vI~lvG~~GsGKTTt~~kLA~~l~~-~G~kVllv~~D~~r~~a~eqL~~~~~~~gv~~~~----------~~~~----- 161 (433)
T 3kl4_A 98 FIIMLVGVQGSGKTTTAGKLAYFYKK-RGYKVGLVAADVYRPAAYDQLLQLGNQIGVQVYG----------EPNN----- 161 (433)
T ss_dssp EEEEECCCTTSCHHHHHHHHHHHHHH-TTCCEEEEEECCSCHHHHHHHHHHHHTTTCCEEC----------CTTC-----
T ss_pred eEEEEECCCCCCHHHHHHHHHHHHHH-cCCeEEEEecCccchhHHHHHHHHHHhcCCceee----------cccc-----
Confidence 57889999999999888766655433 34444 5566777777665555555555543210 0000
Q ss_pred EEechHHHHHHHhcCCCCCCCcEEEEeCCCcCC--cChhHHHHHHHHHHHhcCCceEEEeeccc--chHHHHHHhh
Q 006122 145 KFLTDGVLLREMMDDPLLTKYSVIMVDEAHERS--ISTDILLGLLKKIQRCRSDLRLIISSATI--EAKSMSAFFH 216 (660)
Q Consensus 145 ~v~T~~~ll~~l~~~~~l~~~~~iIiDE~Her~--~~~d~ll~~l~~~~~~~~~~kii~~SAT~--~~~~~~~~~~ 216 (660)
..|..+...........++++||||++-... .+..+...+.+......++.-+++++|+. +....++.|.
T Consensus 162 --~dp~~i~~~al~~a~~~~~DvvIIDTaGr~~~~~d~~lm~el~~i~~~~~pd~vlLVlDa~~gq~a~~~a~~f~ 235 (433)
T 3kl4_A 162 --QNPIEIAKKGVDIFVKNKMDIIIVDTAGRHGYGEETKLLEEMKEMYDVLKPDDVILVIDASIGQKAYDLASRFH 235 (433)
T ss_dssp --SCHHHHHHHHHHHTTTTTCSEEEEEECCCSSSCCTTHHHHHHHHHHHHHCCSEEEEEEEGGGGGGGHHHHHHHH
T ss_pred --CCHHHHHHHHHHHHHhcCCCEEEEECCCCccccCCHHHHHHHHHHHHhhCCcceEEEEeCccchHHHHHHHHHh
Confidence 1233333222222223578999999997323 34444444444334456677788899987 4444555555
No 100
>3ec2_A DNA replication protein DNAC; helicase loader, replication initiation factor, ATP-binding, nucleotide-binding; HET: DNA ADP; 2.70A {Aquifex aeolicus} PDB: 3ecc_A*
Probab=97.33 E-value=0.0017 Score=60.11 Aligned_cols=37 Identities=27% Similarity=0.143 Sum_probs=25.5
Q ss_pred cCCEEEEEcCCCCcHHHHHHHHHHhccccCCCeEEEE
Q 006122 64 THATTIIVGETGSGKTTQIPQYLKEAGWADGGRVIAC 100 (660)
Q Consensus 64 ~~~~vii~apTGsGKT~~ip~~l~~~~~~~~~~~i~v 100 (660)
.++.+++.||+|+||||++-.+........+..++++
T Consensus 37 ~g~~~~l~G~~G~GKTtL~~~i~~~~~~~~g~~~~~~ 73 (180)
T 3ec2_A 37 EGKGLTFVGSPGVGKTHLAVATLKAIYEKKGIRGYFF 73 (180)
T ss_dssp GCCEEEECCSSSSSHHHHHHHHHHHHHHHSCCCCCEE
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHHHHHHcCCeEEEE
Confidence 5789999999999999888766554422233334444
No 101
>3dm5_A SRP54, signal recognition 54 kDa protein; protein-RNA, signal recognition particle, SRP-GTPase, protein targeting, cytoplasm, GTP-binding; HET: GDP; 2.51A {Pyrococcus furiosus}
Probab=97.14 E-value=0.0029 Score=66.88 Aligned_cols=133 Identities=21% Similarity=0.250 Sum_probs=73.6
Q ss_pred CCEEEEEcCCCCcHHHHHHHHHHhccccCCCeE-EEEeCchHHHHHHHHHHHHHHhCCeeeeEEeeeeeccccCCCCCce
Q 006122 65 HATTIIVGETGSGKTTQIPQYLKEAGWADGGRV-IACTQPRRLAVQAVASRVAEEMGVKVGEEVGYTIRFEDFTNKDLTA 143 (660)
Q Consensus 65 ~~~vii~apTGsGKT~~ip~~l~~~~~~~~~~~-i~v~p~r~la~~~~~~~~~~~~~~~~~~~vg~~~~~~~~~~~~~~~ 143 (660)
..+++++|++|+||||.+..+...... .+.++ ++.+.+.+.++....+..+...+..+.. ... .
T Consensus 100 p~vIlivG~~G~GKTTt~~kLA~~l~~-~G~kVllv~~D~~R~aa~eqL~~~~~~~gvpv~~---------~~~-~---- 164 (443)
T 3dm5_A 100 PTILLMVGIQGSGKTTTVAKLARYFQK-RGYKVGVVCSDTWRPGAYHQLRQLLDRYHIEVFG---------NPQ-E---- 164 (443)
T ss_dssp SEEEEEECCTTSSHHHHHHHHHHHHHT-TTCCEEEEECCCSSTHHHHHHHHHHGGGTCEEEC---------CTT-C----
T ss_pred CeEEEEECcCCCCHHHHHHHHHHHHHH-CCCeEEEEeCCCcchhHHHHHHHHHHhcCCcEEe---------cCC-C----
Confidence 357899999999999888766654432 33343 5556677777665555555555543211 000 0
Q ss_pred EEEechHHHHHHHhcCCCCCCCcEEEEeCCCcCCcChhHHHHHHHHHH-HhcCCceEEEeeccc--chHHHHHHhh
Q 006122 144 IKFLTDGVLLREMMDDPLLTKYSVIMVDEAHERSISTDILLGLLKKIQ-RCRSDLRLIISSATI--EAKSMSAFFH 216 (660)
Q Consensus 144 I~v~T~~~ll~~l~~~~~l~~~~~iIiDE~Her~~~~d~ll~~l~~~~-~~~~~~kii~~SAT~--~~~~~~~~~~ 216 (660)
..|..+.+.......-.++++||||.+= |....+-+..-++.+. ...++.-+++++||. +.....+.|.
T Consensus 165 ---~dp~~i~~~al~~a~~~~~DvVIIDTaG-rl~~d~~lm~el~~i~~~~~pd~vlLVvDA~~gq~a~~~a~~f~ 236 (443)
T 3dm5_A 165 ---KDAIKLAKEGVDYFKSKGVDIIIVDTAG-RHKEDKALIEEMKQISNVIHPHEVILVIDGTIGQQAYNQALAFK 236 (443)
T ss_dssp ---CCHHHHHHHHHHHHHHTTCSEEEEECCC-CSSCCHHHHHHHHHHHHHHCCSEEEEEEEGGGGGGHHHHHHHHH
T ss_pred ---CCHHHHHHHHHHHHHhCCCCEEEEECCC-cccchHHHHHHHHHHHHhhcCceEEEEEeCCCchhHHHHHHHHH
Confidence 1233322211111112358999999996 4433333333343333 345777788899987 3334445554
No 102
>2orw_A Thymidine kinase; TMTK, TP4A, transferase; HET: 4TA; 1.50A {Thermotoga maritima} PDB: 2qpo_A 2qq0_A* 2qqe_A*
Probab=97.11 E-value=0.0012 Score=61.45 Aligned_cols=39 Identities=23% Similarity=0.272 Sum_probs=28.4
Q ss_pred cCCEEEEEcCCCCcHHHHHHHHHHhccccCCCeEEEEeCc
Q 006122 64 THATTIIVGETGSGKTTQIPQYLKEAGWADGGRVIACTQP 103 (660)
Q Consensus 64 ~~~~vii~apTGsGKT~~ip~~l~~~~~~~~~~~i~v~p~ 103 (660)
.+...++.||.|+||||.+-+.+.... ..+.+++++.+.
T Consensus 2 ~g~i~vi~G~~gsGKTT~ll~~~~~~~-~~g~~v~~~~~~ 40 (184)
T 2orw_A 2 SGKLTVITGPMYSGKTTELLSFVEIYK-LGKKKVAVFKPK 40 (184)
T ss_dssp CCCEEEEEESTTSSHHHHHHHHHHHHH-HTTCEEEEEEEC
T ss_pred ccEEEEEECCCCCCHHHHHHHHHHHHH-HCCCeEEEEeec
Confidence 367889999999999999877766543 234556666655
No 103
>3te6_A Regulatory protein SIR3; heterochromatin, gene silencing, SIR complex, HMR, HML, TELO AAA+ domain, structural, nucleus, gene RE; 2.80A {Saccharomyces cerevisiae}
Probab=97.10 E-value=0.0029 Score=64.01 Aligned_cols=123 Identities=14% Similarity=0.055 Sum_probs=63.1
Q ss_pred cCCEEEEEcCCCCcHHHHHHHHHHhcccc--C----CCeEEEEeCchHHHHHHHHHHHHHHh-CCeeeeEEeeeeecccc
Q 006122 64 THATTIIVGETGSGKTTQIPQYLKEAGWA--D----GGRVIACTQPRRLAVQAVASRVAEEM-GVKVGEEVGYTIRFEDF 136 (660)
Q Consensus 64 ~~~~vii~apTGsGKT~~ip~~l~~~~~~--~----~~~~i~v~p~r~la~~~~~~~~~~~~-~~~~~~~vg~~~~~~~~ 136 (660)
.+.+++|.||+|+|||+++-..+.+.... . .-..+.+--..-.....+...+.+.+ +...
T Consensus 44 ~~~~lli~GpPGTGKT~~v~~v~~~L~~~~~~~~~~~~~~v~INc~~~~t~~~~~~~I~~~L~g~~~------------- 110 (318)
T 3te6_A 44 QNKLFYITNADDSTKFQLVNDVMDELITSSARKELPIFDYIHIDALELAGMDALYEKIWFAISKENL------------- 110 (318)
T ss_dssp CCCEEEEECCCSHHHHHHHHHHHHHHHHTTTTTSSCCEEEEEEETTCCC--HHHHHHHHHHHSCCC--------------
T ss_pred CCCeEEEECCCCCCHHHHHHHHHHHHHHHhhhccCCceEEEEEeccccCCHHHHHHHHHHHhcCCCC-------------
Confidence 45689999999999997776655543211 1 11233333221111112222333333 2110
Q ss_pred CCCCCceEEEechHHHHHHHhcCC-CCCCCcEEEEeCCCcCCcChhHHHHHHHHHHHhcCCceEEEeecccc
Q 006122 137 TNKDLTAIKFLTDGVLLREMMDDP-LLTKYSVIMVDEAHERSISTDILLGLLKKIQRCRSDLRLIISSATIE 207 (660)
Q Consensus 137 ~~~~~~~I~v~T~~~ll~~l~~~~-~l~~~~~iIiDE~Her~~~~d~ll~~l~~~~~~~~~~kii~~SAT~~ 207 (660)
... . +...|.+.+.... .-....+||+||+|... ..+++..+++.......++-+|+.++|++
T Consensus 111 ~~~-~------~~~~L~~~f~~~~~~~~~~~ii~lDE~d~l~-~q~~L~~l~~~~~~~~s~~~vI~i~n~~d 174 (318)
T 3te6_A 111 CGD-I------SLEALNFYITNVPKAKKRKTLILIQNPENLL-SEKILQYFEKWISSKNSKLSIICVGGHNV 174 (318)
T ss_dssp -CC-C------CHHHHHHHHHHSCGGGSCEEEEEEECCSSSC-CTHHHHHHHHHHHCSSCCEEEEEECCSSC
T ss_pred Cch-H------HHHHHHHHHHHhhhccCCceEEEEecHHHhh-cchHHHHHHhcccccCCcEEEEEEecCcc
Confidence 000 0 1223333332211 12345689999999544 77777777765433344566778899984
No 104
>2o0j_A Terminase, DNA packaging protein GP17; nucleotide-binding fold, hydrolase; HET: DNA ADP; 1.80A {Enterobacteria phage T4} PDB: 2o0h_A* 2o0k_A*
Probab=97.06 E-value=0.011 Score=61.32 Aligned_cols=152 Identities=13% Similarity=0.178 Sum_probs=82.4
Q ss_pred CCcHHHHHHHHHHHhcCCEEEEEcCCCCcHHHHHHHHHHh-ccccCCCeEEEEeCchHHHHHHHHHHHHH---HhCC--e
Q 006122 49 LPVYKYRTAILYLVETHATTIIVGETGSGKTTQIPQYLKE-AGWADGGRVIACTQPRRLAVQAVASRVAE---EMGV--K 122 (660)
Q Consensus 49 lPi~~~~~~i~~~l~~~~~vii~apTGsGKT~~ip~~l~~-~~~~~~~~~i~v~p~r~la~~~~~~~~~~---~~~~--~ 122 (660)
+.+..+|..++..+...+.+++..+-+.|||+++..++.. .....+..++++.+++..|.. +.+++.. .... .
T Consensus 162 ~~L~p~Qk~il~~l~~~R~~vi~~sRq~GKT~l~a~~~l~~a~~~~g~~v~~vA~t~~qA~~-vf~~i~~mi~~~P~ll~ 240 (385)
T 2o0j_A 162 VQLRDYQRDMLKIMSSKRMTVCNLSRQLGKTTVVAIFLAHFVCFNKDKAVGILAHKGSMSAE-VLDRTKQAIELLPDFLQ 240 (385)
T ss_dssp CCCCHHHHHHHHHHHHSSEEEEEECSSSCHHHHHHHHHHHHHHSSSSCEEEEEESSHHHHHH-HHHHHHHHHHHSCTTTS
T ss_pred CCCCHHHHHHHHhhccCcEEEEEEcCcCChhHHHHHHHHHHHHhCCCCeEEEEeCCHHHHHH-HHHHHHHHHHhChHhhh
Confidence 5679999999998877788999999999999776555443 223344567777787776644 3344332 2221 1
Q ss_pred --eeeEEeeeeeccccCCCCCceEEEec--hHHHHHHHhcCCCCCCCcEEEEeCCCcCCcChhHHHHHHHHHHHhcCCce
Q 006122 123 --VGEEVGYTIRFEDFTNKDLTAIKFLT--DGVLLREMMDDPLLTKYSVIMVDEAHERSISTDILLGLLKKIQRCRSDLR 198 (660)
Q Consensus 123 --~~~~vg~~~~~~~~~~~~~~~I~v~T--~~~ll~~l~~~~~l~~~~~iIiDE~Her~~~~d~ll~~l~~~~~~~~~~k 198 (660)
........+.+. . ...|.+.+ ++.+. + .+.+++|+||+|.-.-..+.+.. +......+++.+
T Consensus 241 ~~~~~~~~~~I~f~----n-Gs~i~~lsa~~~slr----G----~~~~~viiDE~a~~~~~~el~~a-l~~~ls~~~~~k 306 (385)
T 2o0j_A 241 PGIVEWNKGSIELD----N-GSSIGAYASSPDAVR----G----NSFAMIYIEDCAFIPNFHDSWLA-IQPVISSGRRSK 306 (385)
T ss_dssp CCEEEECSSEEEET----T-SCEEEEEECSHHHHH----T----SCCSEEEEESGGGSTTHHHHHHH-HHHHHHSTTCCE
T ss_pred hhhccCCccEEEeC----C-CCEEEEEECCCCCcc----C----CCCCEEEechhhhcCCCHHHHHH-HHHHhhcCCCCc
Confidence 101111122221 1 34444433 33332 1 24689999999953211233333 333333334455
Q ss_pred EEEee-cccchHHHHHHhh
Q 006122 199 LIISS-ATIEAKSMSAFFH 216 (660)
Q Consensus 199 ii~~S-AT~~~~~~~~~~~ 216 (660)
+++.| ++.. ..+.+.+.
T Consensus 307 iiiiSTP~g~-n~fy~l~~ 324 (385)
T 2o0j_A 307 IIITTTPNGL-NHFYDIWT 324 (385)
T ss_dssp EEEEECCCSS-SHHHHHHH
T ss_pred EEEEeCCCCc-hhHHHHHH
Confidence 55443 4444 34555543
No 105
>1xx6_A Thymidine kinase; NESG, northeast structural genomics consortium, protein STRU initiative, PSI, structural genomics, DNA synthesis; HET: ADP; 2.00A {Clostridium acetobutylicum} SCOP: c.37.1.24 g.39.1.14
Probab=97.05 E-value=0.0025 Score=59.58 Aligned_cols=39 Identities=18% Similarity=0.243 Sum_probs=28.8
Q ss_pred cCCEEEEEcCCCCcHHHHHHHHHHhccccCCCeEEEEeCc
Q 006122 64 THATTIIVGETGSGKTTQIPQYLKEAGWADGGRVIACTQP 103 (660)
Q Consensus 64 ~~~~vii~apTGsGKT~~ip~~l~~~~~~~~~~~i~v~p~ 103 (660)
.+...++.||.||||||.+-..+.... ..+.+++++.|.
T Consensus 7 ~g~i~v~~G~mgsGKTT~ll~~a~r~~-~~g~kV~v~k~~ 45 (191)
T 1xx6_A 7 HGWVEVIVGPMYSGKSEELIRRIRRAK-IAKQKIQVFKPE 45 (191)
T ss_dssp CCEEEEEECSTTSSHHHHHHHHHHHHH-HTTCCEEEEEEC
T ss_pred CCEEEEEECCCCCcHHHHHHHHHHHHH-HCCCEEEEEEec
Confidence 456889999999999988887777653 345556666554
No 106
>3n70_A Transport activator; sigma-54, ntpase, PSI, MCSG, structural genomics, center for structural genomics; 2.80A {Escherichia coli}
Probab=96.86 E-value=0.0056 Score=54.36 Aligned_cols=32 Identities=25% Similarity=0.338 Sum_probs=22.9
Q ss_pred HHHHHHHHhcCCEEEEEcCCCCcHHHHHHHHH
Q 006122 55 RTAILYLVETHATTIIVGETGSGKTTQIPQYL 86 (660)
Q Consensus 55 ~~~i~~~l~~~~~vii~apTGsGKT~~ip~~l 86 (660)
++.+-.+...+..+++.||+|+|||+++-.+.
T Consensus 14 ~~~~~~~a~~~~~vll~G~~GtGKt~lA~~i~ 45 (145)
T 3n70_A 14 RRRLQQLSETDIAVWLYGAPGTGRMTGARYLH 45 (145)
T ss_dssp HHHHHHHTTCCSCEEEESSTTSSHHHHHHHHH
T ss_pred HHHHHHHhCCCCCEEEECCCCCCHHHHHHHHH
Confidence 33444444667789999999999997765443
No 107
>4b3f_X DNA-binding protein smubp-2; hydrolase, helicase; 2.50A {Homo sapiens} PDB: 4b3g_A
Probab=96.85 E-value=0.0023 Score=72.09 Aligned_cols=65 Identities=25% Similarity=0.445 Sum_probs=45.4
Q ss_pred cHHHHHHHH-HHHhcCCEEEEEcCCCCcHHHHHHHHHHhccccCCCeEEEEeCchHHHHHHHHHHHHH
Q 006122 51 VYKYRTAIL-YLVETHATTIIVGETGSGKTTQIPQYLKEAGWADGGRVIACTQPRRLAVQAVASRVAE 117 (660)
Q Consensus 51 i~~~~~~i~-~~l~~~~~vii~apTGsGKT~~ip~~l~~~~~~~~~~~i~v~p~r~la~~~~~~~~~~ 117 (660)
+...|.+++ .++...+..+|.||+|||||+.+..++.... ..+.++++|+|+. .|+..+.+++..
T Consensus 190 LN~~Q~~AV~~al~~~~~~lI~GPPGTGKT~ti~~~I~~l~-~~~~~ILv~a~TN-~AvD~i~erL~~ 255 (646)
T 4b3f_X 190 LDTSQKEAVLFALSQKELAIIHGPPGTGKTTTVVEIILQAV-KQGLKVLCCAPSN-IAVDNLVERLAL 255 (646)
T ss_dssp CCHHHHHHHHHHHHCSSEEEEECCTTSCHHHHHHHHHHHHH-HTTCCEEEEESSH-HHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHhcCCCceEEECCCCCCHHHHHHHHHHHHH-hCCCeEEEEcCch-HHHHHHHHHHHh
Confidence 455565555 4556677999999999999976666655442 3456677777775 566677777764
No 108
>2kjq_A DNAA-related protein; solution structure, NESG, structural genomics, PSI-2, protei structure initiative; NMR {Neisseria meningitidis serogroup B}
Probab=96.82 E-value=0.00076 Score=60.47 Aligned_cols=26 Identities=23% Similarity=0.441 Sum_probs=21.5
Q ss_pred cCCEEEEEcCCCCcHHHHHHHHHHhc
Q 006122 64 THATTIIVGETGSGKTTQIPQYLKEA 89 (660)
Q Consensus 64 ~~~~vii~apTGsGKT~~ip~~l~~~ 89 (660)
.++.+++.||+|+|||+++-.+....
T Consensus 35 ~g~~~~l~G~~G~GKTtL~~~i~~~~ 60 (149)
T 2kjq_A 35 HGQFIYVWGEEGAGKSHLLQAWVAQA 60 (149)
T ss_dssp CCSEEEEESSSTTTTCHHHHHHHHHH
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHHH
Confidence 68899999999999998887665544
No 109
>1vma_A Cell division protein FTSY; TM0570, structural genomics, JCS protein structure initiative, PSI, joint center for structu genomics; HET: CIT; 1.60A {Thermotoga maritima} SCOP: a.24.13.1 c.37.1.10
Probab=96.80 E-value=0.012 Score=59.29 Aligned_cols=122 Identities=23% Similarity=0.265 Sum_probs=63.7
Q ss_pred CCEEEEEcCCCCcHHHHHHHHHHhccccCCCeE-EEEeCchHHHHHHHHHHHHHHhCCeeeeEEeeeeeccccCCCCCce
Q 006122 65 HATTIIVGETGSGKTTQIPQYLKEAGWADGGRV-IACTQPRRLAVQAVASRVAEEMGVKVGEEVGYTIRFEDFTNKDLTA 143 (660)
Q Consensus 65 ~~~vii~apTGsGKT~~ip~~l~~~~~~~~~~~-i~v~p~r~la~~~~~~~~~~~~~~~~~~~vg~~~~~~~~~~~~~~~ 143 (660)
+.++.++|++|+||||.+-.+...... .++++ ++-..+++.++....+.+.+..+..+. . .....
T Consensus 104 ~~vi~ivG~~GsGKTTl~~~LA~~l~~-~g~kV~lv~~D~~r~~a~eqL~~~~~~~gl~~~---~------~~s~~---- 169 (306)
T 1vma_A 104 PFVIMVVGVNGTGKTTSCGKLAKMFVD-EGKSVVLAAADTFRAAAIEQLKIWGERVGATVI---S------HSEGA---- 169 (306)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHHHHHH-TTCCEEEEEECTTCHHHHHHHHHHHHHHTCEEE---C------CSTTC----
T ss_pred CeEEEEEcCCCChHHHHHHHHHHHHHh-cCCEEEEEccccccHHHHHHHHHHHHHcCCcEE---e------cCCcc----
Confidence 457889999999999888766654432 34444 334456555544333333444444321 0 00111
Q ss_pred EEEechHHHH-HHHhcCCCCCCCcEEEEeCCCcCCcChhHHHHHHHHHHHh-------cCCceEEEeeccc
Q 006122 144 IKFLTDGVLL-REMMDDPLLTKYSVIMVDEAHERSISTDILLGLLKKIQRC-------RSDLRLIISSATI 206 (660)
Q Consensus 144 I~v~T~~~ll-~~l~~~~~l~~~~~iIiDE~Her~~~~d~ll~~l~~~~~~-------~~~~kii~~SAT~ 206 (660)
.|..+. +.+. .....++++||+||+- +....+.+...++.+... .++--++.+.||.
T Consensus 170 ----~~~~v~~~al~-~a~~~~~dvvIiDtpg-~~~~~~~l~~eL~~l~~~i~~~i~~~p~~vllVlda~t 234 (306)
T 1vma_A 170 ----DPAAVAFDAVA-HALARNKDVVIIDTAG-RLHTKKNLMEELRKVHRVVKKKIPDAPHETLLVIDATT 234 (306)
T ss_dssp ----CHHHHHHHHHH-HHHHTTCSEEEEEECC-CCSCHHHHHHHHHHHHHHGGGTCTTCCSEEEEEEEGGG
T ss_pred ----CHHHHHHHHHH-HHHhcCCCEEEEECCC-chhhHHHHHHHHHHHHHHHhhccCCCCcEEEEEEECCC
Confidence 122221 1111 0113467999999997 544444444444444332 2444466778875
No 110
>1njg_A DNA polymerase III subunit gamma; rossman-like fold, AAA+ ATPase domains, sensor 1, sensor 2, transferase; HET: DNA; 2.20A {Escherichia coli} SCOP: c.37.1.20 PDB: 1njf_A*
Probab=96.77 E-value=0.01 Score=56.98 Aligned_cols=35 Identities=23% Similarity=0.185 Sum_probs=25.4
Q ss_pred HHHHHHHHhcCC---EEEEEcCCCCcHHHHHHHHHHhc
Q 006122 55 RTAILYLVETHA---TTIIVGETGSGKTTQIPQYLKEA 89 (660)
Q Consensus 55 ~~~i~~~l~~~~---~vii~apTGsGKT~~ip~~l~~~ 89 (660)
.+.+...+..++ .++|.||+|+|||+++-.+....
T Consensus 32 ~~~l~~~l~~~~~~~~~ll~G~~G~GKT~l~~~~~~~~ 69 (250)
T 1njg_A 32 LTALANGLSLGRIHHAYLFSGTRGVGKTSIARLLAKGL 69 (250)
T ss_dssp HHHHHHHHHHTCCCSEEEEECSTTSCHHHHHHHHHHHH
T ss_pred HHHHHHHHHcCCCCeEEEEECCCCCCHHHHHHHHHHHh
Confidence 345555565554 79999999999998887665543
No 111
>2chg_A Replication factor C small subunit; DNA-binding protein, DNA replication, clamp loader, AAA+ ATPase, ATP-binding, nucleotide-binding; HET: ANP; 2.1A {Archaeoglobus fulgidus}
Probab=96.77 E-value=0.013 Score=55.41 Aligned_cols=33 Identities=21% Similarity=0.333 Sum_probs=23.2
Q ss_pred HHHHHHHhcC--CEEEEEcCCCCcHHHHHHHHHHh
Q 006122 56 TAILYLVETH--ATTIIVGETGSGKTTQIPQYLKE 88 (660)
Q Consensus 56 ~~i~~~l~~~--~~vii~apTGsGKT~~ip~~l~~ 88 (660)
+.+.+.+..+ ..+++.||+|+|||+++-.+...
T Consensus 27 ~~l~~~l~~~~~~~~ll~G~~G~GKT~l~~~l~~~ 61 (226)
T 2chg_A 27 QRLKGYVERKNIPHLLFSGPPGTGKTATAIALARD 61 (226)
T ss_dssp HHHHHHHHTTCCCCEEEECSTTSSHHHHHHHHHHH
T ss_pred HHHHHHHhCCCCCeEEEECCCCCCHHHHHHHHHHH
Confidence 4444555544 35999999999999887665543
No 112
>3lfu_A DNA helicase II; SF1 helicase, ATP-binding, DNA damage, DNA REP replication, DNA-binding, hydrolase, nucleotide-B SOS response; HET: DNA; 1.80A {Escherichia coli} PDB: 2is6_A* 2is2_A* 2is1_A* 2is4_A*
Probab=96.70 E-value=0.006 Score=68.67 Aligned_cols=68 Identities=15% Similarity=0.220 Sum_probs=43.7
Q ss_pred CcHHHHHHHHHHHhcCCEEEEEcCCCCcHHHHHHHHHHhc---cccCCCeEEEEeCchHHHHHHHHHHHHHHhC
Q 006122 50 PVYKYRTAILYLVETHATTIIVGETGSGKTTQIPQYLKEA---GWADGGRVIACTQPRRLAVQAVASRVAEEMG 120 (660)
Q Consensus 50 Pi~~~~~~i~~~l~~~~~vii~apTGsGKT~~ip~~l~~~---~~~~~~~~i~v~p~r~la~~~~~~~~~~~~~ 120 (660)
.+.+.|.+++. ..+..++|.|+.|||||+.+-.-+... ...+..+++++++++.. +..+.+++.+..+
T Consensus 9 ~Ln~~Q~~av~--~~~~~~lV~a~aGsGKT~~l~~ri~~l~~~~~~~~~~iL~ltft~~a-a~e~~~rl~~~~~ 79 (647)
T 3lfu_A 9 SLNDKQREAVA--APRSNLLVLAGAGSGKTRVLVHRIAWLMSVENCSPYSIMAVTFTNKA-AAEMRHRIGQLMG 79 (647)
T ss_dssp TCCHHHHHHHT--CCSSCEEEEECTTSCHHHHHHHHHHHHHHTSCCCGGGEEEEESSHHH-HHHHHHHHHHHHC
T ss_pred cCCHHHHHHHh--CCCCCEEEEECCCCCHHHHHHHHHHHHHHhCCCChhhEEEEeccHHH-HHHHHHHHHHHhc
Confidence 35677777776 335678999999999996654333222 11123467888887655 4466777776644
No 113
>2w58_A DNAI, primosome component (helicase loader); ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.50A {Geobacillus kaustophilus HTA426}
Probab=96.66 E-value=0.006 Score=57.38 Aligned_cols=35 Identities=17% Similarity=0.157 Sum_probs=24.1
Q ss_pred CEEEEEcCCCCcHHHHHHHHHHhccccCCCeEEEEe
Q 006122 66 ATTIIVGETGSGKTTQIPQYLKEAGWADGGRVIACT 101 (660)
Q Consensus 66 ~~vii~apTGsGKT~~ip~~l~~~~~~~~~~~i~v~ 101 (660)
..+++.||+|+|||+++-.+..... ..+..++++.
T Consensus 55 ~~~~l~G~~GtGKT~la~~i~~~~~-~~~~~~~~~~ 89 (202)
T 2w58_A 55 KGLYLHGSFGVGKTYLLAAIANELA-KRNVSSLIVY 89 (202)
T ss_dssp CEEEEECSTTSSHHHHHHHHHHHHH-TTTCCEEEEE
T ss_pred CeEEEECCCCCCHHHHHHHHHHHHH-HcCCeEEEEE
Confidence 7899999999999988765554442 2334455443
No 114
>2j9r_A Thymidine kinase; TK1, DNK, lasso, transferase, ATP-binding, deoxyribonucleoside kinase, DNA synthesis, phosphate accept nucleotide-binding; HET: THM; 2.7A {Bacillus anthracis} PDB: 2ja1_A*
Probab=96.65 E-value=0.0041 Score=58.70 Aligned_cols=40 Identities=15% Similarity=0.136 Sum_probs=28.9
Q ss_pred cCCEEEEEcCCCCcHHHHHHHHHHhccccCCCeEEEEeCch
Q 006122 64 THATTIIVGETGSGKTTQIPQYLKEAGWADGGRVIACTQPR 104 (660)
Q Consensus 64 ~~~~vii~apTGsGKT~~ip~~l~~~~~~~~~~~i~v~p~r 104 (660)
.+...++.|+.||||||.+-..+.... ..+.+++++.|..
T Consensus 27 ~G~l~vitG~MgsGKTT~lL~~a~r~~-~~g~kVli~k~~~ 66 (214)
T 2j9r_A 27 NGWIEVICGSMFSGKSEELIRRVRRTQ-FAKQHAIVFKPCI 66 (214)
T ss_dssp SCEEEEEECSTTSCHHHHHHHHHHHHH-HTTCCEEEEECC-
T ss_pred CCEEEEEECCCCCcHHHHHHHHHHHHH-HCCCEEEEEEecc
Confidence 456788999999999988888777663 3455566666553
No 115
>1fnn_A CDC6P, cell division control protein 6; ORC1, AAA protein, DNA replication initation factor, cell cycle control factor; HET: ADP; 2.00A {Pyrobaculum aerophilum} SCOP: a.4.5.11 c.37.1.20
Probab=96.63 E-value=0.0052 Score=64.20 Aligned_cols=116 Identities=16% Similarity=0.237 Sum_probs=58.3
Q ss_pred EEEEEcCCCCcHHHHHHHHHHhccccCCCeEEEEeCchHHHHHHHHHHHHHHhCCeeeeEEeeeeeccccCCCCCceEEE
Q 006122 67 TTIIVGETGSGKTTQIPQYLKEAGWADGGRVIACTQPRRLAVQAVASRVAEEMGVKVGEEVGYTIRFEDFTNKDLTAIKF 146 (660)
Q Consensus 67 ~vii~apTGsGKT~~ip~~l~~~~~~~~~~~i~v~p~r~la~~~~~~~~~~~~~~~~~~~vg~~~~~~~~~~~~~~~I~v 146 (660)
.++|.||+|+|||+++-.+........+...+.+..........+...+...++.... .. .
T Consensus 46 ~~li~G~~G~GKTtl~~~l~~~~~~~~~~~~~~i~~~~~~~~~~~~~~l~~~l~~~~~-------------~~-~----- 106 (389)
T 1fnn_A 46 RATLLGRPGTGKTVTLRKLWELYKDKTTARFVYINGFIYRNFTAIIGEIARSLNIPFP-------------RR-G----- 106 (389)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHHTTSCCCEEEEEETTTCCSHHHHHHHHHHHTTCCCC-------------SS-C-----
T ss_pred eEEEECCCCCCHHHHHHHHHHHHhhhcCeeEEEEeCccCCCHHHHHHHHHHHhCccCC-------------CC-C-----
Confidence 8999999999999888766655422112345555422211122333444444432110 00 0
Q ss_pred echHHHHH----HHhcCCCCCCCcEEEEeCCCcCCcChhHHHHHHHHHHHhc----CCceEEEeeccc
Q 006122 147 LTDGVLLR----EMMDDPLLTKYSVIMVDEAHERSISTDILLGLLKKIQRCR----SDLRLIISSATI 206 (660)
Q Consensus 147 ~T~~~ll~----~l~~~~~l~~~~~iIiDE~Her~~~~d~ll~~l~~~~~~~----~~~kii~~SAT~ 206 (660)
.+.+.+.+ .+.. .....+|||||+|.. +.+.+..+++.+.... .+..+|+.|...
T Consensus 107 ~~~~~~~~~l~~~l~~---~~~~~vlilDE~~~l--~~~~~~~L~~~~~~~~~~~~~~~~iI~~~~~~ 169 (389)
T 1fnn_A 107 LSRDEFLALLVEHLRE---RDLYMFLVLDDAFNL--APDILSTFIRLGQEADKLGAFRIALVIVGHND 169 (389)
T ss_dssp CCHHHHHHHHHHHHHH---TTCCEEEEEETGGGS--CHHHHHHHHHHTTCHHHHSSCCEEEEEEESST
T ss_pred CCHHHHHHHHHHHHhh---cCCeEEEEEECcccc--chHHHHHHHHHHHhCCCCCcCCEEEEEEECCc
Confidence 01222222 2221 234569999999943 4455555544442222 356666665544
No 116
>1a5t_A Delta prime, HOLB; zinc finger, DNA replication; 2.20A {Escherichia coli K12} SCOP: a.80.1.1 c.37.1.20 PDB: 1jr3_E* 1xxh_E* 1xxi_E* 3glf_E* 3glg_E* 3glh_E* 3gli_E*
Probab=96.56 E-value=0.011 Score=60.72 Aligned_cols=51 Identities=14% Similarity=0.218 Sum_probs=31.0
Q ss_pred HHHHHHhcCCCCCCCcEEEEeCCCcCCcChhHHHHHHHHHHHhcCCceEEEee
Q 006122 151 VLLREMMDDPLLTKYSVIMVDEAHERSISTDILLGLLKKIQRCRSDLRLIISS 203 (660)
Q Consensus 151 ~ll~~l~~~~~l~~~~~iIiDE~Her~~~~d~ll~~l~~~~~~~~~~kii~~S 203 (660)
.+.+.+...+......++||||+|. +..+....+++.+..-.++..+|+.+
T Consensus 95 ~l~~~~~~~~~~~~~kvviIdead~--l~~~a~naLLk~lEep~~~~~~Il~t 145 (334)
T 1a5t_A 95 EVTEKLNEHARLGGAKVVWVTDAAL--LTDAAANALLKTLEEPPAETWFFLAT 145 (334)
T ss_dssp HHHHHTTSCCTTSSCEEEEESCGGG--BCHHHHHHHHHHHTSCCTTEEEEEEE
T ss_pred HHHHHHhhccccCCcEEEEECchhh--cCHHHHHHHHHHhcCCCCCeEEEEEe
Confidence 4445555556667899999999994 34445555666554333344555544
No 117
>3cpe_A Terminase, DNA packaging protein GP17; large terminase, alternative initiation, ATP-binding, DNA- binding, hydrolase, nuclease; HET: DNA; 2.80A {Bacteriophage T4} PDB: 3ezk_A*
Probab=96.48 E-value=0.038 Score=61.30 Aligned_cols=69 Identities=16% Similarity=0.236 Sum_probs=49.1
Q ss_pred CCcHHHHHHHHHHHhcCCEEEEEcCCCCcHHHHHHHHHHhc-cccCCCeEEEEeCchHHHHHHHHHHHHHH
Q 006122 49 LPVYKYRTAILYLVETHATTIIVGETGSGKTTQIPQYLKEA-GWADGGRVIACTQPRRLAVQAVASRVAEE 118 (660)
Q Consensus 49 lPi~~~~~~i~~~l~~~~~vii~apTGsGKT~~ip~~l~~~-~~~~~~~~i~v~p~r~la~~~~~~~~~~~ 118 (660)
+.+..+|..++..+...+.+++.++-|+|||+.+..++... ...++..++++.+.+..+.. +...+...
T Consensus 162 ~~l~p~Q~~i~~~l~~~r~~~i~~~Rq~GKS~~~a~~~l~~~~~~~~~~i~~va~t~~qA~~-~~~~i~~~ 231 (592)
T 3cpe_A 162 VQLRDYQRDMLKIMSSKRMTVCNLSRQLGKTTVVAIFLAHFVCFNKDKAVGILAHKGSMSAE-VLDRTKQA 231 (592)
T ss_dssp CCCCHHHHHHHHHHHHCSEEEEEECSSSCHHHHHHHHHHHHHHTSSSCEEEEEESSHHHHHH-HHHHHHHH
T ss_pred CcCCHHHHHHHHhhccccEEEEEEcCccChHHHHHHHHHHHHHhCCCCeEEEEECCHHHHHH-HHHHHHHH
Confidence 45789999999998777889999999999997765444332 22234467888888876655 44555443
No 118
>2px0_A Flagellar biosynthesis protein FLHF; SRP GTPase, flagellum, protein transport, biosynthetic protein; HET: GNP; 3.00A {Bacillus subtilis} PDB: 2px3_A* 3syn_A*
Probab=96.46 E-value=0.0098 Score=59.74 Aligned_cols=128 Identities=20% Similarity=0.212 Sum_probs=66.5
Q ss_pred cCCEEEEEcCCCCcHHHHHHHHHHhccccCCCeEEEE-eCchHHHHHHHHHHHHHHhCCeeeeEEeeeeeccccCCCCCc
Q 006122 64 THATTIIVGETGSGKTTQIPQYLKEAGWADGGRVIAC-TQPRRLAVQAVASRVAEEMGVKVGEEVGYTIRFEDFTNKDLT 142 (660)
Q Consensus 64 ~~~~vii~apTGsGKT~~ip~~l~~~~~~~~~~~i~v-~p~r~la~~~~~~~~~~~~~~~~~~~vg~~~~~~~~~~~~~~ 142 (660)
.+.++.+.|++|+||||.+-.+........+.++.++ .-+.+.++.......++..+..+. ..
T Consensus 104 ~g~vi~lvG~~GsGKTTl~~~LA~~l~~~~G~~V~lv~~D~~r~~a~eqL~~~~~~~gl~~~------------~~---- 167 (296)
T 2px0_A 104 HSKYIVLFGSTGAGKTTTLAKLAAISMLEKHKKIAFITTDTYRIAAVEQLKTYAELLQAPLE------------VC---- 167 (296)
T ss_dssp CSSEEEEEESTTSSHHHHHHHHHHHHHHTTCCCEEEEECCCSSTTHHHHHHHHHTTTTCCCC------------BC----
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHHHHhcCCEEEEEecCcccchHHHHHHHHHHhcCCCeE------------ec----
Confidence 3568999999999999988777655432234344444 334444433222223332332110 00
Q ss_pred eEEEechHHHHHHHhcCCCCCCCcEEEEeCCCcCCcChhHHHHHHHHHHH-hcCCceEEEeecccchHHHHHHh
Q 006122 143 AIKFLTDGVLLREMMDDPLLTKYSVIMVDEAHERSISTDILLGLLKKIQR-CRSDLRLIISSATIEAKSMSAFF 215 (660)
Q Consensus 143 ~I~v~T~~~ll~~l~~~~~l~~~~~iIiDE~Her~~~~d~ll~~l~~~~~-~~~~~kii~~SAT~~~~~~~~~~ 215 (660)
..+..+...+.. +.++++||||.+- +......+..-+..+.. ..++-.+++++||.+...+.++.
T Consensus 168 ----~~~~~l~~al~~---~~~~dlvIiDT~G-~~~~~~~~~~el~~~l~~~~~~~~~lVl~at~~~~~~~~~~ 233 (296)
T 2px0_A 168 ----YTKEEFQQAKEL---FSEYDHVFVDTAG-RNFKDPQYIDELKETIPFESSIQSFLVLSATAKYEDMKHIV 233 (296)
T ss_dssp ----SSHHHHHHHHHH---GGGSSEEEEECCC-CCTTSHHHHHHHHHHSCCCTTEEEEEEEETTBCHHHHHHHT
T ss_pred ----CCHHHHHHHHHH---hcCCCEEEEeCCC-CChhhHHHHHHHHHHHhhcCCCeEEEEEECCCCHHHHHHHH
Confidence 123333222221 3678999999775 44333222222333322 22444578888887666665543
No 119
>3vkw_A Replicase large subunit; alpha/beta domain, helicase, transferase; 1.90A {Tomato mosaic virus}
Probab=96.41 E-value=0.007 Score=63.70 Aligned_cols=108 Identities=17% Similarity=0.124 Sum_probs=63.5
Q ss_pred CCEEEEEcCCCCcHHHHHHHHHHhccccCCCeEEEEeCchHHHHHHHHHHHHHHhCCeeeeEEeeeeeccccCCCCCceE
Q 006122 65 HATTIIVGETGSGKTTQIPQYLKEAGWADGGRVIACTQPRRLAVQAVASRVAEEMGVKVGEEVGYTIRFEDFTNKDLTAI 144 (660)
Q Consensus 65 ~~~vii~apTGsGKT~~ip~~l~~~~~~~~~~~i~v~p~r~la~~~~~~~~~~~~~~~~~~~vg~~~~~~~~~~~~~~~I 144 (660)
.++.+|.|+.|||||+.+-..+.. .+.++++|+++++. .+.+++.+. +. . . ....
T Consensus 161 ~~v~~I~G~aGsGKTt~I~~~~~~------~~~lVlTpT~~aa~-~l~~kl~~~-~~---------------~-~-~~~~ 215 (446)
T 3vkw_A 161 AKVVLVDGVPGCGKTKEILSRVNF------EEDLILVPGRQAAE-MIRRRANAS-GI---------------I-V-ATKD 215 (446)
T ss_dssp SEEEEEEECTTSCHHHHHHHHCCT------TTCEEEESCHHHHH-HHHHHHTTT-SC---------------C-C-CCTT
T ss_pred ccEEEEEcCCCCCHHHHHHHHhcc------CCeEEEeCCHHHHH-HHHHHhhhc-Cc---------------c-c-cccc
Confidence 357899999999999887655421 34688999988864 444443211 10 0 1 2234
Q ss_pred EEechHHHHHHHhcCCC-CCCCcEEEEeCCCcCCcChhHHHHHHHHHHHhcCCceEEEeecc
Q 006122 145 KFLTDGVLLREMMDDPL-LTKYSVIMVDEAHERSISTDILLGLLKKIQRCRSDLRLIISSAT 205 (660)
Q Consensus 145 ~v~T~~~ll~~l~~~~~-l~~~~~iIiDE~Her~~~~d~ll~~l~~~~~~~~~~kii~~SAT 205 (660)
.+.|-+.++.. .... ...+++|||||+- .++...+..++..+ +..++|++.-+
T Consensus 216 ~V~T~dsfL~~--~~~~~~~~~d~liiDE~s--m~~~~~l~~l~~~~----~~~~vilvGD~ 269 (446)
T 3vkw_A 216 NVRTVDSFLMN--YGKGARCQFKRLFIDEGL--MLHTGCVNFLVEMS----LCDIAYVYGDT 269 (446)
T ss_dssp TEEEHHHHHHT--TTSSCCCCCSEEEEETGG--GSCHHHHHHHHHHT----TCSEEEEEECT
T ss_pred eEEEeHHhhcC--CCCCCCCcCCEEEEeCcc--cCCHHHHHHHHHhC----CCCEEEEecCc
Confidence 47787776532 1111 2358999999997 45555555544332 23556665543
No 120
>1jr3_A DNA polymerase III subunit gamma; processivity, processivity clamp, clamp loader, AAA+ ATPase, transferase; HET: DNA; 2.70A {Escherichia coli} SCOP: a.80.1.1 c.37.1.20 PDB: 1xxh_B* 3glh_B* 3glf_B* 3gli_B* 3glg_B* 1xxi_B*
Probab=96.40 E-value=0.013 Score=60.91 Aligned_cols=52 Identities=21% Similarity=0.415 Sum_probs=30.6
Q ss_pred HHHHHHHhcCCCCCCCcEEEEeCCCcCCcChhHHHHHHHHHHHhcCCceEEEee
Q 006122 150 GVLLREMMDDPLLTKYSVIMVDEAHERSISTDILLGLLKKIQRCRSDLRLIISS 203 (660)
Q Consensus 150 ~~ll~~l~~~~~l~~~~~iIiDE~Her~~~~d~ll~~l~~~~~~~~~~kii~~S 203 (660)
..+...+...+...+..+|||||+|. ++.+....+++.+.....+..+|+.+
T Consensus 105 ~~l~~~~~~~~~~~~~~vliiDe~~~--l~~~~~~~Ll~~le~~~~~~~~Il~~ 156 (373)
T 1jr3_A 105 RDLLDNVQYAPARGRFKVYLIDEVHM--LSRHSFNALLKTLEEPPEHVKFLLAT 156 (373)
T ss_dssp HHHHHHTTSCCSSSSSEEEEEECGGG--SCHHHHHHHHHHHHSCCSSEEEEEEE
T ss_pred HHHHHHHhhccccCCeEEEEEECcch--hcHHHHHHHHHHHhcCCCceEEEEEe
Confidence 44555555555566788999999994 34444555555554333444444443
No 121
>3bos_A Putative DNA replication factor; P-loop containing nucleoside triphosphate hydrolases, struct genomics; HET: MSE CDP; 1.75A {Shewanella amazonensis} PDB: 3sc3_A
Probab=96.38 E-value=0.0075 Score=58.15 Aligned_cols=26 Identities=23% Similarity=0.190 Sum_probs=21.1
Q ss_pred cCCEEEEEcCCCCcHHHHHHHHHHhc
Q 006122 64 THATTIIVGETGSGKTTQIPQYLKEA 89 (660)
Q Consensus 64 ~~~~vii~apTGsGKT~~ip~~l~~~ 89 (660)
.+..+++.||+|+|||+++-.+....
T Consensus 51 ~~~~~ll~G~~G~GKT~la~~l~~~~ 76 (242)
T 3bos_A 51 GVQAIYLWGPVKSGRTHLIHAACARA 76 (242)
T ss_dssp SCSEEEEECSTTSSHHHHHHHHHHHH
T ss_pred CCCeEEEECCCCCCHHHHHHHHHHHH
Confidence 46789999999999998877665543
No 122
>2bjv_A PSP operon transcriptional activator; AAA, transcription activation, gene regulation, sigma54 activator, enhancer binding protein, PSPF; 1.7A {Escherichia coli} PDB: 2bjw_A 2c96_A* 2c98_A* 2c99_A* 2c9c_A* 2vii_A*
Probab=96.32 E-value=0.016 Score=57.11 Aligned_cols=28 Identities=25% Similarity=0.373 Sum_probs=21.0
Q ss_pred HHhcCCEEEEEcCCCCcHHHHHHHHHHh
Q 006122 61 LVETHATTIIVGETGSGKTTQIPQYLKE 88 (660)
Q Consensus 61 ~l~~~~~vii~apTGsGKT~~ip~~l~~ 88 (660)
+...+..+++.||+|+|||+++-.+...
T Consensus 25 ~~~~~~~vll~G~~GtGKt~la~~i~~~ 52 (265)
T 2bjv_A 25 LAPLDKPVLIIGERGTGKELIASRLHYL 52 (265)
T ss_dssp HTTSCSCEEEECCTTSCHHHHHHHHHHT
T ss_pred HhCCCCCEEEECCCCCcHHHHHHHHHHh
Confidence 3445678999999999999776554443
No 123
>3co5_A Putative two-component system transcriptional RES regulator; structural genomics, APC89341.1; 2.40A {Neisseria gonorrhoeae}
Probab=96.30 E-value=0.0096 Score=52.68 Aligned_cols=30 Identities=17% Similarity=0.185 Sum_probs=22.1
Q ss_pred HHHHHHHHHhcCCEEEEEcCCCCcHHHHHH
Q 006122 54 YRTAILYLVETHATTIIVGETGSGKTTQIP 83 (660)
Q Consensus 54 ~~~~i~~~l~~~~~vii~apTGsGKT~~ip 83 (660)
.++.+-.+...+..+++.||+|+|||+++-
T Consensus 16 l~~~~~~~~~~~~~vll~G~~GtGKt~lA~ 45 (143)
T 3co5_A 16 MNREVEAAAKRTSPVFLTGEAGSPFETVAR 45 (143)
T ss_dssp HHHHHHHHHTCSSCEEEEEETTCCHHHHHG
T ss_pred HHHHHHHHhCCCCcEEEECCCCccHHHHHH
Confidence 344444455677889999999999996554
No 124
>1l8q_A Chromosomal replication initiator protein DNAA; AAA+, helix-turn-helix, nucleotide-binding, DNA binding, REP initiation, DNA binding protein; HET: ADP; 2.70A {Aquifex aeolicus} SCOP: a.4.12.2 c.37.1.20 PDB: 3r8f_A* 2hcb_A*
Probab=96.30 E-value=0.022 Score=57.98 Aligned_cols=36 Identities=33% Similarity=0.353 Sum_probs=24.6
Q ss_pred CCEEEEEcCCCCcHHHHHHHHHHhccccCCCeEEEEe
Q 006122 65 HATTIIVGETGSGKTTQIPQYLKEAGWADGGRVIACT 101 (660)
Q Consensus 65 ~~~vii~apTGsGKT~~ip~~l~~~~~~~~~~~i~v~ 101 (660)
.+.+++.||+|+|||+++-.+...... .+..++++.
T Consensus 37 ~~~lll~G~~GtGKT~la~~i~~~~~~-~~~~~~~i~ 72 (324)
T 1l8q_A 37 YNPIFIYGSVGTGKTHLLQAAGNEAKK-RGYRVIYSS 72 (324)
T ss_dssp CSSEEEECSSSSSHHHHHHHHHHHHHH-TTCCEEEEE
T ss_pred CCeEEEECCCCCcHHHHHHHHHHHHHH-CCCEEEEEE
Confidence 357999999999999887766554421 234455554
No 125
>3e2i_A Thymidine kinase; Zn-binding, ATP-binding, DNA synthesis, nucleotide-B transferase; HET: MSE; 2.01A {Staphylococcus aureus}
Probab=96.25 E-value=0.0061 Score=57.44 Aligned_cols=41 Identities=17% Similarity=0.215 Sum_probs=27.8
Q ss_pred hcCCEEEEEcCCCCcHHHHHHHHHHhccccCCCeEEEEeCch
Q 006122 63 ETHATTIIVGETGSGKTTQIPQYLKEAGWADGGRVIACTQPR 104 (660)
Q Consensus 63 ~~~~~vii~apTGsGKT~~ip~~l~~~~~~~~~~~i~v~p~r 104 (660)
..+...+++||-||||||.+-..+..... .+.+++++.|..
T Consensus 26 ~~G~I~vitG~M~sGKTT~Llr~~~r~~~-~g~kvli~kp~~ 66 (219)
T 3e2i_A 26 HSGWIECITGSMFSGKSEELIRRLRRGIY-AKQKVVVFKPAI 66 (219)
T ss_dssp -CCEEEEEEECTTSCHHHHHHHHHHHHHH-TTCCEEEEEEC-
T ss_pred CCceEEEEECCCCCCHHHHHHHHHHHHHH-cCCceEEEEecc
Confidence 45788999999999999866655555432 345566666653
No 126
>2gk6_A Regulator of nonsense transcripts 1; UPF1, helicase, NMD, hydrolase; HET: ADP; 2.40A {Homo sapiens} PDB: 2gjk_A* 2gk7_A 2xzo_A* 2xzp_A
Probab=96.24 E-value=0.0091 Score=66.76 Aligned_cols=66 Identities=18% Similarity=0.348 Sum_probs=47.1
Q ss_pred cHHHHHHHHHHHhcCCEEEEEcCCCCcHHHHHHHHHHhccccCCCeEEEEeCchHHHHHHHHHHHHH
Q 006122 51 VYKYRTAILYLVETHATTIIVGETGSGKTTQIPQYLKEAGWADGGRVIACTQPRRLAVQAVASRVAE 117 (660)
Q Consensus 51 i~~~~~~i~~~l~~~~~vii~apTGsGKT~~ip~~l~~~~~~~~~~~i~v~p~r~la~~~~~~~~~~ 117 (660)
+...|.+++..+..+..++|.||+|||||+.+-.++.......+.++++++|+. .|+..+.+++.+
T Consensus 181 ln~~Q~~av~~~l~~~~~li~GppGTGKT~~~~~~i~~l~~~~~~~ilv~a~tn-~A~~~l~~~l~~ 246 (624)
T 2gk6_A 181 LNHSQVYAVKTVLQRPLSLIQGPPGTGKTVTSATIVYHLARQGNGPVLVCAPSN-IAVDQLTEKIHQ 246 (624)
T ss_dssp CCHHHHHHHHHHHTCSEEEEECCTTSCHHHHHHHHHHHHHTSSSCCEEEEESSH-HHHHHHHHHHHT
T ss_pred CCHHHHHHHHHHhcCCCeEEECCCCCCHHHHHHHHHHHHHHcCCCeEEEEeCcH-HHHHHHHHHHHh
Confidence 567788888887778899999999999997766555443222455677777775 555566666653
No 127
>1w4r_A Thymidine kinase; type II, human, cytosolic, phosphorylation, transferase; HET: TTP; 1.83A {Homo sapiens} PDB: 1xbt_A* 2wvj_A* 2j87_A*
Probab=96.17 E-value=0.0083 Score=55.69 Aligned_cols=39 Identities=15% Similarity=0.192 Sum_probs=30.1
Q ss_pred cCCEEEEEcCCCCcHHHHHHHHHHhccccCCCeEEEEeCc
Q 006122 64 THATTIIVGETGSGKTTQIPQYLKEAGWADGGRVIACTQP 103 (660)
Q Consensus 64 ~~~~vii~apTGsGKT~~ip~~l~~~~~~~~~~~i~v~p~ 103 (660)
.++..++.||.|||||+.+-+.+..... .+.+++++.|.
T Consensus 19 ~g~l~fiyG~MgsGKTt~Ll~~i~n~~~-~~~kvl~~kp~ 57 (195)
T 1w4r_A 19 RGQIQVILGPMFSGKSTELMRRVRRFQI-AQYKCLVIKYA 57 (195)
T ss_dssp CCEEEEEEECTTSCHHHHHHHHHHHHHH-TTCCEEEEEET
T ss_pred ceEEEEEECCCCCcHHHHHHHHHHHHHH-cCCeEEEEccc
Confidence 4678999999999999877777766543 34667888776
No 128
>3e70_C DPA, signal recognition particle receptor; FTSY, SRP-GTPase, protein-targeting, transport protein; HET: GDP; 1.97A {Pyrococcus furiosus} PDB: 3dmd_B 3dm9_B*
Probab=96.15 E-value=0.014 Score=59.50 Aligned_cols=124 Identities=20% Similarity=0.251 Sum_probs=66.0
Q ss_pred cCCEEEEEcCCCCcHHHHHHHHHHhccccCCCeE-EEEeCchHHHHHHHHHHHHHHhCCeeeeEEeeeeeccccCCCCCc
Q 006122 64 THATTIIVGETGSGKTTQIPQYLKEAGWADGGRV-IACTQPRRLAVQAVASRVAEEMGVKVGEEVGYTIRFEDFTNKDLT 142 (660)
Q Consensus 64 ~~~~vii~apTGsGKT~~ip~~l~~~~~~~~~~~-i~v~p~r~la~~~~~~~~~~~~~~~~~~~vg~~~~~~~~~~~~~~ 142 (660)
.+.++.+.||+|+||||++-.+...... .++++ +.-..+.+.++....+..++..+..+.. ... ..
T Consensus 128 ~g~vi~lvG~nGaGKTTll~~Lag~l~~-~~g~V~l~g~D~~r~~a~eql~~~~~~~gv~~v~--------q~~-~~--- 194 (328)
T 3e70_C 128 KPYVIMFVGFNGSGKTTTIAKLANWLKN-HGFSVVIAASDTFRAGAIEQLEEHAKRIGVKVIK--------HSY-GA--- 194 (328)
T ss_dssp SSEEEEEECCTTSSHHHHHHHHHHHHHH-TTCCEEEEEECCSSTTHHHHHHHHHHHTTCEEEC--------CCT-TC---
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHh-cCCEEEEEeecccccchHHHHHHHHHHcCceEEe--------ccc-cC---
Confidence 4568999999999999988776654432 33444 4445555555554444445555543210 000 00
Q ss_pred eEEEechHH-HHHHHhcCCCCCCCcEEEEeCCCcCCcChhHHHHHHHHHHHhcCCceEEEeeccc
Q 006122 143 AIKFLTDGV-LLREMMDDPLLTKYSVIMVDEAHERSISTDILLGLLKKIQRCRSDLRLIISSATI 206 (660)
Q Consensus 143 ~I~v~T~~~-ll~~l~~~~~l~~~~~iIiDE~Her~~~~d~ll~~l~~~~~~~~~~kii~~SAT~ 206 (660)
.|.. ....+.. ....+++++++|.+............+........++..++++.||.
T Consensus 195 -----~p~~~v~e~l~~-~~~~~~d~vliDtaG~~~~~~~l~~eL~~i~ral~~de~llvLDa~t 253 (328)
T 3e70_C 195 -----DPAAVAYDAIQH-AKARGIDVVLIDTAGRSETNRNLMDEMKKIARVTKPNLVIFVGDALA 253 (328)
T ss_dssp -----CHHHHHHHHHHH-HHHHTCSEEEEEECCSCCTTTCHHHHHHHHHHHHCCSEEEEEEEGGG
T ss_pred -----CHHHHHHHHHHH-HHhccchhhHHhhccchhHHHHHHHHHHHHHHHhcCCCCEEEEecHH
Confidence 0111 1111100 00135678999998732333334444333333355778888899887
No 129
>2qgz_A Helicase loader, putative primosome component; structural genomics, PSI-2, protein structure initiative; 2.40A {Streptococcus pyogenes serotype M3}
Probab=96.13 E-value=0.0075 Score=61.03 Aligned_cols=38 Identities=16% Similarity=0.163 Sum_probs=26.0
Q ss_pred CCEEEEEcCCCCcHHHHHHHHHHhccccCCCeEEEEeC
Q 006122 65 HATTIIVGETGSGKTTQIPQYLKEAGWADGGRVIACTQ 102 (660)
Q Consensus 65 ~~~vii~apTGsGKT~~ip~~l~~~~~~~~~~~i~v~p 102 (660)
++.+++.||+|+|||+++-.+........+..++++..
T Consensus 152 ~~~lll~G~~GtGKT~La~aia~~~~~~~g~~v~~~~~ 189 (308)
T 2qgz_A 152 QKGLYLYGDMGIGKSYLLAAMAHELSEKKGVSTTLLHF 189 (308)
T ss_dssp CCEEEEECSTTSSHHHHHHHHHHHHHHHSCCCEEEEEH
T ss_pred CceEEEECCCCCCHHHHHHHHHHHHHHhcCCcEEEEEH
Confidence 57899999999999987765555443123445555543
No 130
>2orv_A Thymidine kinase; TP4A (P1-(5'-adenosyl)P4-(5'- (2'deoxythymidil))tetraphosphate, transferase; HET: 4TA; 2.30A {Homo sapiens} SCOP: c.37.1.24 g.39.1.14
Probab=96.07 E-value=0.015 Score=55.33 Aligned_cols=40 Identities=15% Similarity=0.218 Sum_probs=29.3
Q ss_pred cCCEEEEEcCCCCcHHHHHHHHHHhccccCCCeEEEEeCch
Q 006122 64 THATTIIVGETGSGKTTQIPQYLKEAGWADGGRVIACTQPR 104 (660)
Q Consensus 64 ~~~~vii~apTGsGKT~~ip~~l~~~~~~~~~~~i~v~p~r 104 (660)
.+...++.|+.||||||.+-+.+.... ..+.+++++.|..
T Consensus 18 ~g~l~v~~G~MgsGKTT~lL~~~~r~~-~~g~kvli~kp~~ 57 (234)
T 2orv_A 18 RGQIQVILGPMFSGKSTELMRRVRRFQ-IAQYKCLVIKYAK 57 (234)
T ss_dssp CCEEEEEECCTTSCHHHHHHHHHHHHH-TTTCCEEEEEETT
T ss_pred ceEEEEEECCCCCcHHHHHHHHHHHHH-HCCCeEEEEeecC
Confidence 477899999999999988877777653 3455566665543
No 131
>1ls1_A Signal recognition particle protein; FFH, SRP54, SRP, GTPase, ultrahigh resolution, protein transport; 1.10A {Thermus aquaticus} SCOP: a.24.13.1 c.37.1.10 PDB: 1jpn_B* 1jpj_A* 1ry1_U* 2j45_A* 1o87_A* 2c04_A* 2j46_A* 1rj9_B* 2c03_A* 2j7p_A* 1okk_A* 2cnw_A* 1ng1_A* 2xkv_A 3ng1_A 1ffh_A 2ng1_A*
Probab=96.01 E-value=0.04 Score=55.20 Aligned_cols=124 Identities=23% Similarity=0.225 Sum_probs=61.7
Q ss_pred CCEEEEEcCCCCcHHHHHHHHHHhccccCCCeEEEE-eCchHHHHHHHHHHHHHHhCCeeeeEEeeeeeccccCCCCCce
Q 006122 65 HATTIIVGETGSGKTTQIPQYLKEAGWADGGRVIAC-TQPRRLAVQAVASRVAEEMGVKVGEEVGYTIRFEDFTNKDLTA 143 (660)
Q Consensus 65 ~~~vii~apTGsGKT~~ip~~l~~~~~~~~~~~i~v-~p~r~la~~~~~~~~~~~~~~~~~~~vg~~~~~~~~~~~~~~~ 143 (660)
++++.++|++|+||||.+..+...... .+++++++ ..+++-++......+.+..+..+- ... . .
T Consensus 98 ~~~i~i~g~~G~GKTT~~~~la~~~~~-~~~~v~l~~~d~~~~~~~~ql~~~~~~~~l~~~--~~~-----~--~----- 162 (295)
T 1ls1_A 98 RNLWFLVGLQGSGKTTTAAKLALYYKG-KGRRPLLVAADTQRPAAREQLRLLGEKVGVPVL--EVM-----D--G----- 162 (295)
T ss_dssp SEEEEEECCTTTTHHHHHHHHHHHHHH-TTCCEEEEECCSSCHHHHHHHHHHHHHHTCCEE--ECC-----T--T-----
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHHH-cCCeEEEecCCcccHhHHHHHHHhcccCCeEEE--EcC-----C--C-----
Confidence 457888999999999887766544432 34444433 444444433222223334443221 000 0 0
Q ss_pred EEEechHHHHHHHhcCCCCCCCcEEEEeCCCcCCcChhHHHHHHHHHHHhcCCceEEEeeccc
Q 006122 144 IKFLTDGVLLREMMDDPLLTKYSVIMVDEAHERSISTDILLGLLKKIQRCRSDLRLIISSATI 206 (660)
Q Consensus 144 I~v~T~~~ll~~l~~~~~l~~~~~iIiDE~Her~~~~d~ll~~l~~~~~~~~~~kii~~SAT~ 206 (660)
..|..+.+.........++++|||||.-.-+.+...+..+.+......++.-++.+.|+.
T Consensus 163 ---~~p~~l~~~~l~~~~~~~~D~viiDtpp~~~~d~~~~~~l~~~~~~~~~~~~~lv~~~~~ 222 (295)
T 1ls1_A 163 ---ESPESIRRRVEEKARLEARDLILVDTAGRLQIDEPLMGELARLKEVLGPDEVLLVLDAMT 222 (295)
T ss_dssp ---CCHHHHHHHHHHHHHHHTCCEEEEECCCCSSCCHHHHHHHHHHHHHHCCSEEEEEEEGGG
T ss_pred ---CCHHHHHHHHHHHHHhCCCCEEEEeCCCCccccHHHHHHHHHHhhhcCCCEEEEEEeCCC
Confidence 123333332221111246899999999523444444444433333334555555677764
No 132
>3syl_A Protein CBBX; photosynthesis, rubisco activase, AAA+ protein, calvin cycle chaperone; 3.00A {Rhodobacter sphaeroides} PDB: 3syk_A 3zuh_A*
Probab=95.95 E-value=0.02 Score=57.72 Aligned_cols=41 Identities=24% Similarity=0.322 Sum_probs=25.5
Q ss_pred CcEEEEeCCCcC-------CcChhHHHHHHHHHHHhcCCceEEEeecc
Q 006122 165 YSVIMVDEAHER-------SISTDILLGLLKKIQRCRSDLRLIISSAT 205 (660)
Q Consensus 165 ~~~iIiDE~Her-------~~~~d~ll~~l~~~~~~~~~~kii~~SAT 205 (660)
.++|+|||+|.. ....+.+..+++.+.....+..+|+.+.+
T Consensus 131 ~~vl~iDEid~l~~~~~~~~~~~~~~~~Ll~~l~~~~~~~~~i~~~~~ 178 (309)
T 3syl_A 131 GGVLFIDEAYYLYRPDNERDYGQEAIEILLQVMENNRDDLVVILAGYA 178 (309)
T ss_dssp TSEEEEETGGGSCCCC---CCTHHHHHHHHHHHHHCTTTCEEEEEECH
T ss_pred CCEEEEEChhhhccCCCcccccHHHHHHHHHHHhcCCCCEEEEEeCCh
Confidence 469999999943 22445555566655555556666655544
No 133
>1iqp_A RFCS; clamp loader, extended AAA-ATPase domain, complex with ADP, replication; HET: ADP; 2.80A {Pyrococcus furiosus} SCOP: a.80.1.1 c.37.1.20
Probab=95.88 E-value=0.034 Score=56.35 Aligned_cols=33 Identities=27% Similarity=0.358 Sum_probs=23.4
Q ss_pred HHHHHHHhcCC--EEEEEcCCCCcHHHHHHHHHHh
Q 006122 56 TAILYLVETHA--TTIIVGETGSGKTTQIPQYLKE 88 (660)
Q Consensus 56 ~~i~~~l~~~~--~vii~apTGsGKT~~ip~~l~~ 88 (660)
+.+...+..++ ++++.||+|+|||+++-.+...
T Consensus 35 ~~l~~~l~~~~~~~~ll~G~~G~GKT~la~~l~~~ 69 (327)
T 1iqp_A 35 KRLKHYVKTGSMPHLLFAGPPGVGKTTAALALARE 69 (327)
T ss_dssp HHHHHHHHHTCCCEEEEESCTTSSHHHHHHHHHHH
T ss_pred HHHHHHHHcCCCCeEEEECcCCCCHHHHHHHHHHH
Confidence 34445555554 6999999999999877655544
No 134
>3u61_B DNA polymerase accessory protein 44; AAA+, ATP hydrolase, clamp loader, sliding clamp, primer-TEM DNA, DNA binding protein-DNA complex; HET: DNA ADP 08T; 3.20A {Enterobacteria phage T4} PDB: 3u5z_B* 3u60_B*
Probab=95.88 E-value=0.057 Score=54.77 Aligned_cols=34 Identities=15% Similarity=0.171 Sum_probs=22.3
Q ss_pred HHHHHHHhcC---CEEEEEcCCCCcHHHHHHHHHHhc
Q 006122 56 TAILYLVETH---ATTIIVGETGSGKTTQIPQYLKEA 89 (660)
Q Consensus 56 ~~i~~~l~~~---~~vii~apTGsGKT~~ip~~l~~~ 89 (660)
+.+.+.+..+ ..+++.||+|+|||+++-.+....
T Consensus 36 ~~l~~~l~~~~~~~~~L~~G~~G~GKT~la~~la~~l 72 (324)
T 3u61_B 36 ETFKSITSKGKIPHIILHSPSPGTGKTTVAKALCHDV 72 (324)
T ss_dssp HHHHHHHHTTCCCSEEEECSSTTSSHHHHHHHHHHHT
T ss_pred HHHHHHHHcCCCCeEEEeeCcCCCCHHHHHHHHHHHh
Confidence 3444455544 356778889999998876655443
No 135
>2xzl_A ATP-dependent helicase NAM7; hydrolase-RNA complex, NMD, RNA degradation, allosteric REGU; HET: ADP 1PE; 2.40A {Saccharomyces cerevisiae}
Probab=95.88 E-value=0.012 Score=67.61 Aligned_cols=66 Identities=18% Similarity=0.341 Sum_probs=46.7
Q ss_pred cHHHHHHHHHHHhcCCEEEEEcCCCCcHHHHHHHHHHhccccCCCeEEEEeCchHHHHHHHHHHHHH
Q 006122 51 VYKYRTAILYLVETHATTIIVGETGSGKTTQIPQYLKEAGWADGGRVIACTQPRRLAVQAVASRVAE 117 (660)
Q Consensus 51 i~~~~~~i~~~l~~~~~vii~apTGsGKT~~ip~~l~~~~~~~~~~~i~v~p~r~la~~~~~~~~~~ 117 (660)
+...|.+++..+..+..++|.||+|||||+.+-.++.......+.++++++|+. .|+..+.+++.+
T Consensus 361 Ln~~Q~~Av~~~l~~~~~lI~GppGTGKT~~i~~~i~~l~~~~~~~ILv~a~tn-~A~d~l~~rL~~ 426 (802)
T 2xzl_A 361 LNSSQSNAVSHVLQRPLSLIQGPPGTGKTVTSATIVYHLSKIHKDRILVCAPSN-VAVDHLAAKLRD 426 (802)
T ss_dssp CCHHHHHHHHHHTTCSEEEEECSTTSSHHHHHHHHHHHHHHHHCCCEEEEESSH-HHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHhcCCCEEEECCCCCCHHHHHHHHHHHHHhCCCCeEEEEcCcH-HHHHHHHHHHHh
Confidence 567888888888788899999999999997665554432211345677777765 555567777654
No 136
>2wjy_A Regulator of nonsense transcripts 1; nonsense mediated decay, zinc-finger, ATP-binding, metal-BIN UPF2, UPF1, helicase, hydrolase; 2.50A {Homo sapiens} PDB: 2wjv_A 2iyk_A
Probab=95.88 E-value=0.017 Score=66.22 Aligned_cols=66 Identities=18% Similarity=0.348 Sum_probs=46.9
Q ss_pred cHHHHHHHHHHHhcCCEEEEEcCCCCcHHHHHHHHHHhccccCCCeEEEEeCchHHHHHHHHHHHHH
Q 006122 51 VYKYRTAILYLVETHATTIIVGETGSGKTTQIPQYLKEAGWADGGRVIACTQPRRLAVQAVASRVAE 117 (660)
Q Consensus 51 i~~~~~~i~~~l~~~~~vii~apTGsGKT~~ip~~l~~~~~~~~~~~i~v~p~r~la~~~~~~~~~~ 117 (660)
+...|.+++..+..++.++|.||+|||||+.+-.++.......+.++++++|+. .|+..+.+++.+
T Consensus 357 Ln~~Q~~Av~~~l~~~~~lI~GppGTGKT~ti~~~i~~l~~~~~~~ilv~a~tn-~A~~~l~~~l~~ 422 (800)
T 2wjy_A 357 LNHSQVYAVKTVLQRPLSLIQGPPGTGKTVTSATIVYHLARQGNGPVLVCAPSN-IAVDQLTEKIHQ 422 (800)
T ss_dssp CCHHHHHHHHHHHTSSEEEEECCTTSCHHHHHHHHHHHHHTTCSSCEEEEESSH-HHHHHHHHHHHT
T ss_pred CCHHHHHHHHHhccCCeEEEEcCCCCCHHHHHHHHHHHHHHcCCCcEEEEcCcH-HHHHHHHHHHHH
Confidence 567788888877778899999999999997766555443222455677777775 555566666543
No 137
>2v1u_A Cell division control protein 6 homolog; DNA replication, nucleotide-binding, replication, archaea; HET: ADP; 3.10A {Aeropyrum pernix}
Probab=95.83 E-value=0.0083 Score=62.49 Aligned_cols=26 Identities=27% Similarity=0.424 Sum_probs=20.6
Q ss_pred cCCEEEEEcCCCCcHHHHHHHHHHhc
Q 006122 64 THATTIIVGETGSGKTTQIPQYLKEA 89 (660)
Q Consensus 64 ~~~~vii~apTGsGKT~~ip~~l~~~ 89 (660)
....++|.||+|+|||+++-.+....
T Consensus 43 ~~~~vll~G~~G~GKT~l~~~~~~~~ 68 (387)
T 2v1u_A 43 KPSNALLYGLTGTGKTAVARLVLRRL 68 (387)
T ss_dssp CCCCEEECBCTTSSHHHHHHHHHHHH
T ss_pred CCCcEEEECCCCCCHHHHHHHHHHHH
Confidence 45679999999999998877665543
No 138
>2gno_A DNA polymerase III, gamma subunit-related protein; structural genomics, joint center for structural genomics, J protein structure initiative; HET: DNA; 2.00A {Thermotoga maritima} SCOP: a.80.1.1 c.37.1.20
Probab=95.79 E-value=0.036 Score=55.85 Aligned_cols=51 Identities=10% Similarity=0.184 Sum_probs=32.1
Q ss_pred HHHHHHhcCCCCCCCcEEEEeCCCcCCcChhHHHHHHHHHHHhcCCceEEEee
Q 006122 151 VLLREMMDDPLLTKYSVIMVDEAHERSISTDILLGLLKKIQRCRSDLRLIISS 203 (660)
Q Consensus 151 ~ll~~l~~~~~l~~~~~iIiDE~Her~~~~d~ll~~l~~~~~~~~~~kii~~S 203 (660)
.+...+...|...++.++||||+|. +..+....+++.+..-.+...+|+.+
T Consensus 69 ~li~~~~~~p~~~~~kvviIdead~--lt~~a~naLLk~LEep~~~t~fIl~t 119 (305)
T 2gno_A 69 TIKDFLNYSPELYTRKYVIVHDCER--MTQQAANAFLKALEEPPEYAVIVLNT 119 (305)
T ss_dssp HHHHHHTSCCSSSSSEEEEETTGGG--BCHHHHHHTHHHHHSCCTTEEEEEEE
T ss_pred HHHHHHhhccccCCceEEEeccHHH--hCHHHHHHHHHHHhCCCCCeEEEEEE
Confidence 4555555666677899999999994 34445556666655444445555544
No 139
>1sxj_E Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=95.68 E-value=0.05 Score=55.93 Aligned_cols=43 Identities=19% Similarity=0.522 Sum_probs=28.5
Q ss_pred CCCCcEEEEeCCCcCCcChhHHHHHHHHHHHhcCCceEEEeeccc
Q 006122 162 LTKYSVIMVDEAHERSISTDILLGLLKKIQRCRSDLRLIISSATI 206 (660)
Q Consensus 162 l~~~~~iIiDE~Her~~~~d~ll~~l~~~~~~~~~~kii~~SAT~ 206 (660)
..+..++|+||+|. ++.+....+++.+....++..+|+.|-.+
T Consensus 132 ~~~~~vlilDE~~~--L~~~~~~~L~~~le~~~~~~~~Il~t~~~ 174 (354)
T 1sxj_E 132 AHRYKCVIINEANS--LTKDAQAALRRTMEKYSKNIRLIMVCDSM 174 (354)
T ss_dssp --CCEEEEEECTTS--SCHHHHHHHHHHHHHSTTTEEEEEEESCS
T ss_pred CCCCeEEEEeCccc--cCHHHHHHHHHHHHhhcCCCEEEEEeCCH
Confidence 34678999999994 66666666666666555566666665443
No 140
>2qen_A Walker-type ATPase; unknown function; HET: ADP; 2.25A {Pyrococcus abyssi}
Probab=95.67 E-value=0.034 Score=56.82 Aligned_cols=36 Identities=19% Similarity=0.296 Sum_probs=27.8
Q ss_pred HHHHHHHHHhcCCEEEEEcCCCCcHHHHHHHHHHhc
Q 006122 54 YRTAILYLVETHATTIIVGETGSGKTTQIPQYLKEA 89 (660)
Q Consensus 54 ~~~~i~~~l~~~~~vii~apTGsGKT~~ip~~l~~~ 89 (660)
..+.+.+.+..++.++|.||.|+|||+++-.+....
T Consensus 20 el~~L~~~l~~~~~v~i~G~~G~GKT~Ll~~~~~~~ 55 (350)
T 2qen_A 20 ESRKLEESLENYPLTLLLGIRRVGKSSLLRAFLNER 55 (350)
T ss_dssp HHHHHHHHHHHCSEEEEECCTTSSHHHHHHHHHHHS
T ss_pred HHHHHHHHHhcCCeEEEECCCcCCHHHHHHHHHHHc
Confidence 334555566667899999999999999988776554
No 141
>1sxj_D Activator 1 41 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=95.64 E-value=0.011 Score=60.76 Aligned_cols=33 Identities=27% Similarity=0.413 Sum_probs=23.4
Q ss_pred HHHHHHHhcC--CEEEEEcCCCCcHHHHHHHHHHh
Q 006122 56 TAILYLVETH--ATTIIVGETGSGKTTQIPQYLKE 88 (660)
Q Consensus 56 ~~i~~~l~~~--~~vii~apTGsGKT~~ip~~l~~ 88 (660)
+.+...+..+ .++++.||+|+|||+++-.+...
T Consensus 47 ~~l~~~l~~~~~~~~ll~G~~G~GKT~la~~la~~ 81 (353)
T 1sxj_D 47 TVLKKTLKSANLPHMLFYGPPGTGKTSTILALTKE 81 (353)
T ss_dssp HHHHHHTTCTTCCCEEEECSTTSSHHHHHHHHHHH
T ss_pred HHHHHHHhcCCCCEEEEECCCCCCHHHHHHHHHHH
Confidence 3444555555 55999999999999877655543
No 142
>2qby_B CDC6 homolog 3, cell division control protein 6 homolog 3; winged-helix domain, helix-turn-helix, AAA+ ATPase domain, protein-DNA complex; HET: DNA SPD ADP; 3.35A {Sulfolobus solfataricus}
Probab=95.54 E-value=0.017 Score=60.25 Aligned_cols=24 Identities=29% Similarity=0.425 Sum_probs=19.6
Q ss_pred CCEEEEEcCCCCcHHHHHHHHHHh
Q 006122 65 HATTIIVGETGSGKTTQIPQYLKE 88 (660)
Q Consensus 65 ~~~vii~apTGsGKT~~ip~~l~~ 88 (660)
.+.++|.||+|+|||+++-.+...
T Consensus 45 ~~~vll~G~~G~GKT~la~~l~~~ 68 (384)
T 2qby_B 45 KFSNLFLGLTGTGKTFVSKYIFNE 68 (384)
T ss_dssp CCEEEEEECTTSSHHHHHHHHHHH
T ss_pred CCcEEEECCCCCCHHHHHHHHHHH
Confidence 567999999999999887665544
No 143
>1ojl_A Transcriptional regulatory protein ZRAR; response regulator, two component system, AAA domain, NTRC family, DNA-binding; HET: ATP; 3.0A {Salmonella typhimurium}
Probab=95.52 E-value=0.02 Score=57.69 Aligned_cols=27 Identities=26% Similarity=0.369 Sum_probs=20.4
Q ss_pred HhcCCEEEEEcCCCCcHHHHHHHHHHh
Q 006122 62 VETHATTIIVGETGSGKTTQIPQYLKE 88 (660)
Q Consensus 62 l~~~~~vii~apTGsGKT~~ip~~l~~ 88 (660)
...+..++|.||||+|||+++-.+...
T Consensus 22 a~~~~~vLi~Ge~GtGKt~lAr~i~~~ 48 (304)
T 1ojl_A 22 APSDATVLIHGDSGTGKELVARALHAC 48 (304)
T ss_dssp CSTTSCEEEESCTTSCHHHHHHHHHHH
T ss_pred hCCCCcEEEECCCCchHHHHHHHHHHh
Confidence 345678999999999999766554443
No 144
>1sxj_C Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=95.43 E-value=0.041 Score=56.39 Aligned_cols=33 Identities=27% Similarity=0.439 Sum_probs=24.6
Q ss_pred HHHHHHHhcCCE--EEEEcCCCCcHHHHHHHHHHh
Q 006122 56 TAILYLVETHAT--TIIVGETGSGKTTQIPQYLKE 88 (660)
Q Consensus 56 ~~i~~~l~~~~~--vii~apTGsGKT~~ip~~l~~ 88 (660)
+.+-..+..++. +++.||+|+|||+++-.+...
T Consensus 35 ~~L~~~i~~g~~~~~ll~Gp~G~GKTtla~~la~~ 69 (340)
T 1sxj_C 35 TTVRKFVDEGKLPHLLFYGPPGTGKTSTIVALARE 69 (340)
T ss_dssp HHHHHHHHTTCCCCEEEECSSSSSHHHHHHHHHHH
T ss_pred HHHHHHHhcCCCceEEEECCCCCCHHHHHHHHHHH
Confidence 344555667765 999999999999887766544
No 145
>2r6a_A DNAB helicase, replicative helicase; replication, DNAB; 2.90A {Geobacillus stearothermophilus} PDB: 2r6c_A 2r6d_A 2r6e_A 2vyf_A 2vye_A
Probab=95.41 E-value=0.021 Score=61.21 Aligned_cols=48 Identities=10% Similarity=0.048 Sum_probs=35.1
Q ss_pred HHHHHHHhcCCEEEEEcCCCCcHHHHHHHHHHhccccCCCeEEEEeCc
Q 006122 56 TAILYLVETHATTIIVGETGSGKTTQIPQYLKEAGWADGGRVIACTQP 103 (660)
Q Consensus 56 ~~i~~~l~~~~~vii~apTGsGKT~~ip~~l~~~~~~~~~~~i~v~p~ 103 (660)
+.++.-+..++.++|.|++|+|||+++-+++.......+.+++++...
T Consensus 194 D~~~gGl~~G~liiI~G~pG~GKTtl~l~ia~~~~~~~g~~Vl~~s~E 241 (454)
T 2r6a_A 194 DRMTSGFQRSDLIIVAARPSVGKTAFALNIAQNVATKTNENVAIFSLE 241 (454)
T ss_dssp HHHHSSBCTTCEEEEECCTTSCHHHHHHHHHHHHHHHSSCCEEEEESS
T ss_pred HhhcCCCCCCCEEEEECCCCCCHHHHHHHHHHHHHHhCCCcEEEEECC
Confidence 444445677899999999999999888887776544334467777643
No 146
>1xwi_A SKD1 protein; VPS4B, AAA ATPase, protein transport; 2.80A {Homo sapiens}
Probab=95.31 E-value=0.059 Score=54.73 Aligned_cols=25 Identities=24% Similarity=0.360 Sum_probs=20.1
Q ss_pred CCEEEEEcCCCCcHHHHHHHHHHhc
Q 006122 65 HATTIIVGETGSGKTTQIPQYLKEA 89 (660)
Q Consensus 65 ~~~vii~apTGsGKT~~ip~~l~~~ 89 (660)
.+.+++.||+|+|||+++-.+..+.
T Consensus 45 ~~~iLL~GppGtGKT~la~ala~~~ 69 (322)
T 1xwi_A 45 WRGILLFGPPGTGKSYLAKAVATEA 69 (322)
T ss_dssp CSEEEEESSSSSCHHHHHHHHHHHT
T ss_pred CceEEEECCCCccHHHHHHHHHHHc
Confidence 3679999999999998877666554
No 147
>1hqc_A RUVB; extended AAA-ATPase domain, complex with nucleotide, hydrolase; HET: ADE; 3.20A {Thermus thermophilus} SCOP: a.4.5.11 c.37.1.20 PDB: 1ixs_B* 1ixr_C*
Probab=95.29 E-value=0.13 Score=51.98 Aligned_cols=24 Identities=29% Similarity=0.349 Sum_probs=19.3
Q ss_pred CCEEEEEcCCCCcHHHHHHHHHHh
Q 006122 65 HATTIIVGETGSGKTTQIPQYLKE 88 (660)
Q Consensus 65 ~~~vii~apTGsGKT~~ip~~l~~ 88 (660)
...+++.||+|+|||+++-.+...
T Consensus 38 ~~~vll~G~~GtGKT~la~~i~~~ 61 (324)
T 1hqc_A 38 LEHLLLFGPPGLGKTTLAHVIAHE 61 (324)
T ss_dssp CCCCEEECCTTCCCHHHHHHHHHH
T ss_pred CCcEEEECCCCCCHHHHHHHHHHH
Confidence 367999999999999877665543
No 148
>2z4s_A Chromosomal replication initiator protein DNAA; AAA+ ATPase, domain III (ATPase domain), ATP-binding, cytoplasm, DNA replication; HET: ADP; 3.00A {Thermotoga maritima} PDB: 2z4r_A*
Probab=95.29 E-value=0.13 Score=54.73 Aligned_cols=37 Identities=24% Similarity=0.140 Sum_probs=23.9
Q ss_pred CCEEEEEcCCCCcHHHHHHHHHHhcccc-CCCeEEEEe
Q 006122 65 HATTIIVGETGSGKTTQIPQYLKEAGWA-DGGRVIACT 101 (660)
Q Consensus 65 ~~~vii~apTGsGKT~~ip~~l~~~~~~-~~~~~i~v~ 101 (660)
.+.+++.||+|+|||+++-.+....... .+..++++.
T Consensus 130 ~~~lll~Gp~G~GKTtLa~aia~~l~~~~~~~~v~~v~ 167 (440)
T 2z4s_A 130 YNPLFIYGGVGLGKTHLLQSIGNYVVQNEPDLRVMYIT 167 (440)
T ss_dssp SCCEEEECSSSSSHHHHHHHHHHHHHHHCCSSCEEEEE
T ss_pred CCeEEEECCCCCCHHHHHHHHHHHHHHhCCCCeEEEee
Confidence 3579999999999998876555433211 134445544
No 149
>3h4m_A Proteasome-activating nucleotidase; ATPase, PAN, ATP-binding, nucleotide-binding, HY; HET: ADP; 3.11A {Methanocaldococcus jannaschii}
Probab=95.21 E-value=0.027 Score=55.98 Aligned_cols=26 Identities=27% Similarity=0.367 Sum_probs=20.7
Q ss_pred hcCCEEEEEcCCCCcHHHHHHHHHHh
Q 006122 63 ETHATTIIVGETGSGKTTQIPQYLKE 88 (660)
Q Consensus 63 ~~~~~vii~apTGsGKT~~ip~~l~~ 88 (660)
.....+++.||+|+|||+++-.+...
T Consensus 49 ~~~~~~ll~G~~GtGKT~la~~la~~ 74 (285)
T 3h4m_A 49 EPPKGILLYGPPGTGKTLLAKAVATE 74 (285)
T ss_dssp CCCSEEEEESSSSSSHHHHHHHHHHH
T ss_pred CCCCeEEEECCCCCcHHHHHHHHHHH
Confidence 35678999999999999887666544
No 150
>2zpa_A Uncharacterized protein YPFI; RNA modification enzyme, RNA helicase, acetyltransferase, GCN5 acetyltransferase; HET: ACO ADP; 2.35A {Escherichia coli K12}
Probab=95.20 E-value=0.039 Score=61.03 Aligned_cols=109 Identities=19% Similarity=0.312 Sum_probs=67.7
Q ss_pred HHHHHHHHHHhc--CCEEEEEcCCCCcHHHHHHHHHHhccccCCCeEEEEeCchHHHHHHHHHHHHHHhCCeeeeEEeee
Q 006122 53 KYRTAILYLVET--HATTIIVGETGSGKTTQIPQYLKEAGWADGGRVIACTQPRRLAVQAVASRVAEEMGVKVGEEVGYT 130 (660)
Q Consensus 53 ~~~~~i~~~l~~--~~~vii~apTGsGKT~~ip~~l~~~~~~~~~~~i~v~p~r~la~~~~~~~~~~~~~~~~~~~vg~~ 130 (660)
..|.++++.+.. ..+.+|+|+-|.|||+.+-.++.... ..+++++|+.+- ++.+.+...+
T Consensus 178 ~dQ~~al~~~~~~~~~~~vlta~RGRGKSa~lG~~~a~~~----~~~~vtAP~~~a-~~~l~~~~~~------------- 239 (671)
T 2zpa_A 178 PEQQQLLKQLMTMPPGVAAVTAARGRGKSALAGQLISRIA----GRAIVTAPAKAS-TDVLAQFAGE------------- 239 (671)
T ss_dssp HHHHHHHHHHTTCCSEEEEEEECTTSSHHHHHHHHHHHSS----SCEEEECSSCCS-CHHHHHHHGG-------------
T ss_pred HHHHHHHHHHHHhhhCeEEEecCCCCCHHHHHHHHHHHHH----hCcEEECCCHHH-HHHHHHHhhC-------------
Confidence 345666666655 55789999999999988877776553 234666666543 3333332110
Q ss_pred eeccccCCCCCceEEEechHHHHHHHhcCCCCCCCcEEEEeCCCcCCcChhHHHHHHHHHHHhcCCceEEEeeccc
Q 006122 131 IRFEDFTNKDLTAIKFLTDGVLLREMMDDPLLTKYSVIMVDEAHERSISTDILLGLLKKIQRCRSDLRLIISSATI 206 (660)
Q Consensus 131 ~~~~~~~~~~~~~I~v~T~~~ll~~l~~~~~l~~~~~iIiDE~Her~~~~d~ll~~l~~~~~~~~~~kii~~SAT~ 206 (660)
.|-|..|..++.. ..+.+++|||||= .+...++ +.+.. ....|+||.|+
T Consensus 240 ------------~i~~~~Pd~~~~~------~~~~dlliVDEAA--aIp~pll----~~ll~---~~~~v~~~tTv 288 (671)
T 2zpa_A 240 ------------KFRFIAPDALLAS------DEQADWLVVDEAA--AIPAPLL----HQLVS---RFPRTLLTTTV 288 (671)
T ss_dssp ------------GCCBCCHHHHHHS------CCCCSEEEEETGG--GSCHHHH----HHHHT---TSSEEEEEEEB
T ss_pred ------------CeEEeCchhhhhC------cccCCEEEEEchh--cCCHHHH----HHHHh---hCCeEEEEecC
Confidence 1456677665422 3468999999997 4554444 44433 23358888888
No 151
>3pfi_A Holliday junction ATP-dependent DNA helicase RUVB; probable holliday junction DNA helicase; HET: ADP; 2.69A {Campylobacter jejuni subsp}
Probab=95.17 E-value=0.12 Score=52.79 Aligned_cols=23 Identities=30% Similarity=0.307 Sum_probs=18.7
Q ss_pred CEEEEEcCCCCcHHHHHHHHHHh
Q 006122 66 ATTIIVGETGSGKTTQIPQYLKE 88 (660)
Q Consensus 66 ~~vii~apTGsGKT~~ip~~l~~ 88 (660)
..+++.||+|+|||+++-.+...
T Consensus 56 ~~vll~G~~GtGKT~la~~ia~~ 78 (338)
T 3pfi_A 56 DHILFSGPAGLGKTTLANIISYE 78 (338)
T ss_dssp CCEEEECSTTSSHHHHHHHHHHH
T ss_pred CeEEEECcCCCCHHHHHHHHHHH
Confidence 47999999999999877665444
No 152
>1w5s_A Origin recognition complex subunit 2 ORC2; replication, CDC6, DNA replication initiation, DNA BIND protein, AAA+ ATPase; HET: ADP; 2.4A {Aeropyrum pernix} SCOP: a.4.5.11 c.37.1.20 PDB: 1w5t_A*
Probab=95.14 E-value=0.026 Score=59.32 Aligned_cols=25 Identities=32% Similarity=0.420 Sum_probs=19.7
Q ss_pred CCEEEE--EcCCCCcHHHHHHHHHHhc
Q 006122 65 HATTII--VGETGSGKTTQIPQYLKEA 89 (660)
Q Consensus 65 ~~~vii--~apTGsGKT~~ip~~l~~~ 89 (660)
...++| .||+|+|||+++-.+....
T Consensus 50 ~~~~li~i~G~~G~GKT~L~~~~~~~~ 76 (412)
T 1w5s_A 50 DVNMIYGSIGRVGIGKTTLAKFTVKRV 76 (412)
T ss_dssp CEEEEEECTTCCSSSHHHHHHHHHHHH
T ss_pred CCEEEEeCcCcCCCCHHHHHHHHHHHH
Confidence 457888 9999999998887665543
No 153
>2w0m_A SSO2452; RECA, SSPF, unknown FUN; 2.0A {Sulfolobus solfataricus P2}
Probab=95.07 E-value=0.016 Score=55.48 Aligned_cols=41 Identities=24% Similarity=0.328 Sum_probs=29.3
Q ss_pred HhcCCEEEEEcCCCCcHHHHHHHHHHhccccCCCeEEEEeCc
Q 006122 62 VETHATTIIVGETGSGKTTQIPQYLKEAGWADGGRVIACTQP 103 (660)
Q Consensus 62 l~~~~~vii~apTGsGKT~~ip~~l~~~~~~~~~~~i~v~p~ 103 (660)
+..+..++|.||+|+||||++-+++..... .+++++++...
T Consensus 20 i~~G~~~~i~G~~GsGKTtl~~~l~~~~~~-~~~~v~~~~~~ 60 (235)
T 2w0m_A 20 IPQGFFIALTGEPGTGKTIFSLHFIAKGLR-DGDPCIYVTTE 60 (235)
T ss_dssp EETTCEEEEECSTTSSHHHHHHHHHHHHHH-HTCCEEEEESS
T ss_pred CcCCCEEEEEcCCCCCHHHHHHHHHHHHHH-CCCeEEEEEcc
Confidence 456889999999999999888777654422 24456666543
No 154
>2qby_A CDC6 homolog 1, cell division control protein 6 homolog 1; winged-helix domain, helix-turn-helix, AAA+ ATPase domain, protein-DNA complex; HET: DNA SPD ADP; 3.35A {Sulfolobus solfataricus}
Probab=95.06 E-value=0.017 Score=59.96 Aligned_cols=25 Identities=32% Similarity=0.416 Sum_probs=20.4
Q ss_pred CCEEEEEcCCCCcHHHHHHHHHHhc
Q 006122 65 HATTIIVGETGSGKTTQIPQYLKEA 89 (660)
Q Consensus 65 ~~~vii~apTGsGKT~~ip~~l~~~ 89 (660)
+..++|.||+|+|||+++-.+....
T Consensus 45 ~~~vli~G~~G~GKTtl~~~l~~~~ 69 (386)
T 2qby_A 45 PNNIFIYGLTGTGKTAVVKFVLSKL 69 (386)
T ss_dssp CCCEEEEECTTSSHHHHHHHHHHHH
T ss_pred CCeEEEECCCCCCHHHHHHHHHHHH
Confidence 5689999999999998887665543
No 155
>2qz4_A Paraplegin; AAA+, SPG7, protease, ADP, structural genomics, structural G consortium, SGC, ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.22A {Homo sapiens}
Probab=95.05 E-value=0.055 Score=52.86 Aligned_cols=26 Identities=27% Similarity=0.385 Sum_probs=20.2
Q ss_pred cCCEEEEEcCCCCcHHHHHHHHHHhc
Q 006122 64 THATTIIVGETGSGKTTQIPQYLKEA 89 (660)
Q Consensus 64 ~~~~vii~apTGsGKT~~ip~~l~~~ 89 (660)
....+++.||+|+|||+++-.+....
T Consensus 38 ~~~~vll~G~~GtGKT~la~~la~~~ 63 (262)
T 2qz4_A 38 VPKGALLLGPPGCGKTLLAKAVATEA 63 (262)
T ss_dssp CCCEEEEESCTTSSHHHHHHHHHHHH
T ss_pred CCceEEEECCCCCCHHHHHHHHHHHh
Confidence 34679999999999998876665443
No 156
>3b9p_A CG5977-PA, isoform A; AAA ATPase, ATP-binding, nucleotide-binding, hydrolase; 2.70A {Drosophila melanogaster}
Probab=94.97 E-value=0.081 Score=52.85 Aligned_cols=25 Identities=24% Similarity=0.337 Sum_probs=20.2
Q ss_pred CCEEEEEcCCCCcHHHHHHHHHHhc
Q 006122 65 HATTIIVGETGSGKTTQIPQYLKEA 89 (660)
Q Consensus 65 ~~~vii~apTGsGKT~~ip~~l~~~ 89 (660)
...+++.||+|+|||+++-.+....
T Consensus 54 ~~~vll~Gp~GtGKT~la~~la~~~ 78 (297)
T 3b9p_A 54 AKGLLLFGPPGNGKTLLARAVATEC 78 (297)
T ss_dssp CSEEEEESSSSSCHHHHHHHHHHHT
T ss_pred CCeEEEECcCCCCHHHHHHHHHHHh
Confidence 5789999999999998876665443
No 157
>2ffh_A Protein (FFH); SRP54, signal recognition particle, GTPase, M domain, RNA-binding, signal sequence-binding, helix-turn-helix, protein targeting; 3.20A {Thermus aquaticus} SCOP: a.24.13.1 a.36.1.1 c.37.1.10 PDB: 2iy3_A
Probab=94.95 E-value=0.13 Score=54.01 Aligned_cols=124 Identities=23% Similarity=0.220 Sum_probs=61.6
Q ss_pred CCEEEEEcCCCCcHHHHHHHHHHhccccCCCeE-EEEeCchHHHHHHHHHHHHHHhCCeeeeEEeeeeeccccCCCCCce
Q 006122 65 HATTIIVGETGSGKTTQIPQYLKEAGWADGGRV-IACTQPRRLAVQAVASRVAEEMGVKVGEEVGYTIRFEDFTNKDLTA 143 (660)
Q Consensus 65 ~~~vii~apTGsGKT~~ip~~l~~~~~~~~~~~-i~v~p~r~la~~~~~~~~~~~~~~~~~~~vg~~~~~~~~~~~~~~~ 143 (660)
+.++.++|++|+||||.+..+...... .+.++ ++-.-+.+.++....+..+...+..+-. .. . .
T Consensus 98 ~~vi~i~G~~GsGKTT~~~~LA~~l~~-~g~~Vllvd~D~~r~aa~~qL~~~~~~~gv~v~~--~~---------~-~-- 162 (425)
T 2ffh_A 98 RNLWFLVGLQGSGKTTTAAKLALYYKG-KGRRPLLVAADTQRPAAREQLRLLGEKVGVPVLE--VM---------D-G-- 162 (425)
T ss_dssp SEEEEEECCTTSSHHHHHHHHHHHHHT-TTCCEEEEECCSSCHHHHHHHHHHHHHHTCCEEE--CC---------T-T--
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHHH-cCCeEEEeeccccCchhHHHHHHhcccCCccEEe--cC---------C-C--
Confidence 347888999999999887766654432 23344 4445555655543333334444443211 00 0 0
Q ss_pred EEEechHHHHHHHhcCCCCCCCcEEEEeCCCcCCcChhHHHHHHHHHHHhcCCceEEEeeccc
Q 006122 144 IKFLTDGVLLREMMDDPLLTKYSVIMVDEAHERSISTDILLGLLKKIQRCRSDLRLIISSATI 206 (660)
Q Consensus 144 I~v~T~~~ll~~l~~~~~l~~~~~iIiDE~Her~~~~d~ll~~l~~~~~~~~~~kii~~SAT~ 206 (660)
..|..+...........++++||||=+-....+......+.+......++.-++.+.|+.
T Consensus 163 ---~~p~~i~~~~l~~~~~~~~DvVIIDTaG~l~~d~~l~~el~~i~~~~~pd~vlLVvDa~t 222 (425)
T 2ffh_A 163 ---ESPESIRRRVEEKARLEARDLILVDTAGRLQIDEPLMGELARLKEVLGPDEVLLVLDAMT 222 (425)
T ss_dssp ---CCHHHHHHHHHHHHHHTTCSEEEEECCCCSSCCHHHHHHHHHHHHHHCCSEEEEEEEGGG
T ss_pred ---CCHHHHHHHHHHHHHHCCCCEEEEcCCCcccccHHHHHHHHHhhhccCCceEEEEEeccc
Confidence 123333222111100246899999987522233333333322222234555566676664
No 158
>3vfd_A Spastin; ATPase, microtubule severing, hydrolase; 3.30A {Homo sapiens}
Probab=94.84 E-value=0.076 Score=55.51 Aligned_cols=24 Identities=25% Similarity=0.349 Sum_probs=19.5
Q ss_pred CCEEEEEcCCCCcHHHHHHHHHHh
Q 006122 65 HATTIIVGETGSGKTTQIPQYLKE 88 (660)
Q Consensus 65 ~~~vii~apTGsGKT~~ip~~l~~ 88 (660)
...+++.||+|+|||+++-.+...
T Consensus 148 ~~~vLL~GppGtGKT~la~aia~~ 171 (389)
T 3vfd_A 148 ARGLLLFGPPGNGKTMLAKAVAAE 171 (389)
T ss_dssp CSEEEEESSTTSCHHHHHHHHHHH
T ss_pred CceEEEECCCCCCHHHHHHHHHHh
Confidence 468999999999999877666444
No 159
>1sxj_B Activator 1 37 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=94.84 E-value=0.081 Score=53.36 Aligned_cols=32 Identities=28% Similarity=0.361 Sum_probs=22.3
Q ss_pred HHHHHHhcCC--EEEEEcCCCCcHHHHHHHHHHh
Q 006122 57 AILYLVETHA--TTIIVGETGSGKTTQIPQYLKE 88 (660)
Q Consensus 57 ~i~~~l~~~~--~vii~apTGsGKT~~ip~~l~~ 88 (660)
.+...+..++ ++++.||+|+|||+++-.+...
T Consensus 32 ~l~~~l~~~~~~~~ll~G~~G~GKt~la~~l~~~ 65 (323)
T 1sxj_B 32 RLQQIAKDGNMPHMIISGMPGIGKTTSVHCLAHE 65 (323)
T ss_dssp HHHHHHHSCCCCCEEEECSTTSSHHHHHHHHHHH
T ss_pred HHHHHHHcCCCCeEEEECcCCCCHHHHHHHHHHH
Confidence 3444455443 4999999999999877655543
No 160
>2yhs_A FTSY, cell division protein FTSY; cell cycle, protein targeting, simibi class GTPase, GTP-BIND membrane, nucleotide-binding; 1.60A {Escherichia coli} PDB: 2qy9_A 2xxa_B* 1fts_A
Probab=94.54 E-value=0.076 Score=56.63 Aligned_cols=41 Identities=27% Similarity=0.373 Sum_probs=27.2
Q ss_pred CCEEEEEcCCCCcHHHHHHHHHHhccccCCCeEEEE-eCchHH
Q 006122 65 HATTIIVGETGSGKTTQIPQYLKEAGWADGGRVIAC-TQPRRL 106 (660)
Q Consensus 65 ~~~vii~apTGsGKT~~ip~~l~~~~~~~~~~~i~v-~p~r~l 106 (660)
+.++.|.|++||||||++-.+..... ..++.+.+. ..+.+.
T Consensus 293 GeVI~LVGpNGSGKTTLl~~LAgll~-~~~G~V~l~g~D~~r~ 334 (503)
T 2yhs_A 293 PFVILMVGVNGVGKTTTIGKLARQFE-QQGKSVMLAAGDTFRA 334 (503)
T ss_dssp TEEEEEECCTTSSHHHHHHHHHHHHH-HTTCCEEEECCCTTCH
T ss_pred CeEEEEECCCcccHHHHHHHHHHHhh-hcCCeEEEecCcccch
Confidence 56889999999999998877655432 234455444 344444
No 161
>3eie_A Vacuolar protein sorting-associated protein 4; AAA ATPase, ATP-binding cassette, ATP-binding, endosome, MEM nucleotide-binding; 2.70A {Saccharomyces cerevisiae} PDB: 3eih_A* 2rko_A 3mhv_C
Probab=94.54 E-value=0.059 Score=54.71 Aligned_cols=25 Identities=24% Similarity=0.373 Sum_probs=19.9
Q ss_pred CCEEEEEcCCCCcHHHHHHHHHHhc
Q 006122 65 HATTIIVGETGSGKTTQIPQYLKEA 89 (660)
Q Consensus 65 ~~~vii~apTGsGKT~~ip~~l~~~ 89 (660)
...+++.||+|+|||+++-.+..+.
T Consensus 51 ~~~vLl~GppGtGKT~la~aia~~~ 75 (322)
T 3eie_A 51 TSGILLYGPPGTGKSYLAKAVATEA 75 (322)
T ss_dssp CCEEEEECSSSSCHHHHHHHHHHHH
T ss_pred CCeEEEECCCCCcHHHHHHHHHHHH
Confidence 4579999999999998876665543
No 162
>1d2n_A N-ethylmaleimide-sensitive fusion protein; hexamerization domain, ATPase, transport; HET: ANP; 1.75A {Cricetulus griseus} SCOP: c.37.1.20 PDB: 1nsf_A*
Probab=94.49 E-value=0.075 Score=52.41 Aligned_cols=23 Identities=26% Similarity=0.400 Sum_probs=18.8
Q ss_pred CEEEEEcCCCCcHHHHHHHHHHh
Q 006122 66 ATTIIVGETGSGKTTQIPQYLKE 88 (660)
Q Consensus 66 ~~vii~apTGsGKT~~ip~~l~~ 88 (660)
..+++.||+|+|||+++-.+...
T Consensus 65 ~~vLl~G~~GtGKT~la~~ia~~ 87 (272)
T 1d2n_A 65 VSVLLEGPPHSGKTALAAKIAEE 87 (272)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHH
T ss_pred eEEEEECCCCCcHHHHHHHHHHH
Confidence 57999999999999877665554
No 163
>3k1j_A LON protease, ATP-dependent protease LON; ATP-binding, nucleotide-binding, Pro hydrolase; HET: ADP PE8; 2.00A {Thermococcus onnurineus}
Probab=94.49 E-value=0.43 Score=52.93 Aligned_cols=35 Identities=17% Similarity=0.236 Sum_probs=28.2
Q ss_pred HHHHHHHHhcCCEEEEEcCCCCcHHHHHHHHHHhc
Q 006122 55 RTAILYLVETHATTIIVGETGSGKTTQIPQYLKEA 89 (660)
Q Consensus 55 ~~~i~~~l~~~~~vii~apTGsGKT~~ip~~l~~~ 89 (660)
.+.+-.++..+..+++.||+|+||||++-.+....
T Consensus 50 l~~l~~~i~~g~~vll~Gp~GtGKTtlar~ia~~l 84 (604)
T 3k1j_A 50 VEVIKTAANQKRHVLLIGEPGTGKSMLGQAMAELL 84 (604)
T ss_dssp HHHHHHHHHTTCCEEEECCTTSSHHHHHHHHHHTS
T ss_pred HhhccccccCCCEEEEEeCCCCCHHHHHHHHhccC
Confidence 35666778889999999999999998887665543
No 164
>1zu4_A FTSY; GTPase, signal recognition particle, SRP, receptor, protein transport; 1.95A {Mycoplasma mycoides} PDB: 1zu5_A
Probab=94.38 E-value=0.31 Score=49.27 Aligned_cols=43 Identities=23% Similarity=0.288 Sum_probs=27.4
Q ss_pred CCEEEEEcCCCCcHHHHHHHHHHhccccCCCeEEEE-eCchHHHH
Q 006122 65 HATTIIVGETGSGKTTQIPQYLKEAGWADGGRVIAC-TQPRRLAV 108 (660)
Q Consensus 65 ~~~vii~apTGsGKT~~ip~~l~~~~~~~~~~~i~v-~p~r~la~ 108 (660)
++++.++|++|+||||.+-.+...... .+++++++ ..+++.++
T Consensus 105 ~~vI~ivG~~G~GKTT~~~~LA~~l~~-~g~kVllid~D~~r~~a 148 (320)
T 1zu4_A 105 LNIFMLVGVNGTGKTTSLAKMANYYAE-LGYKVLIAAADTFRAGA 148 (320)
T ss_dssp CEEEEEESSTTSSHHHHHHHHHHHHHH-TTCCEEEEECCCSCHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHHH-CCCeEEEEeCCCcchhH
Confidence 347889999999999887766554432 34444443 44544443
No 165
>1sxj_A Activator 1 95 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=94.32 E-value=0.2 Score=54.46 Aligned_cols=24 Identities=29% Similarity=0.397 Sum_probs=20.3
Q ss_pred CEEEEEcCCCCcHHHHHHHHHHhc
Q 006122 66 ATTIIVGETGSGKTTQIPQYLKEA 89 (660)
Q Consensus 66 ~~vii~apTGsGKT~~ip~~l~~~ 89 (660)
+.+++.||+|+|||+++-.+..+.
T Consensus 78 ~~lLL~GppGtGKTtla~~la~~l 101 (516)
T 1sxj_A 78 RAAMLYGPPGIGKTTAAHLVAQEL 101 (516)
T ss_dssp SEEEEECSTTSSHHHHHHHHHHHT
T ss_pred cEEEEECCCCCCHHHHHHHHHHHc
Confidence 689999999999998887666554
No 166
>2fna_A Conserved hypothetical protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE ADP; 2.00A {Sulfolobus solfataricus} SCOP: a.4.5.11 c.37.1.20
Probab=94.22 E-value=0.56 Score=47.63 Aligned_cols=32 Identities=19% Similarity=0.287 Sum_probs=24.0
Q ss_pred HHHHHHHhcCCEEEEEcCCCCcHHHHHHHHHHhc
Q 006122 56 TAILYLVETHATTIIVGETGSGKTTQIPQYLKEA 89 (660)
Q Consensus 56 ~~i~~~l~~~~~vii~apTGsGKT~~ip~~l~~~ 89 (660)
+.+.+ +.. +.++|.||.|+|||+++-.+....
T Consensus 23 ~~L~~-l~~-~~v~i~G~~G~GKT~L~~~~~~~~ 54 (357)
T 2fna_A 23 EKLKG-LRA-PITLVLGLRRTGKSSIIKIGINEL 54 (357)
T ss_dssp HHHHH-TCS-SEEEEEESTTSSHHHHHHHHHHHH
T ss_pred HHHHH-hcC-CcEEEECCCCCCHHHHHHHHHHhc
Confidence 33444 444 689999999999999888776654
No 167
>2qp9_X Vacuolar protein sorting-associated protein 4; ATPase domain, beta domain, C-terminal helix, ATP-binding, E nucleotide-binding; 2.90A {Saccharomyces cerevisiae} PDB: 2qpa_A*
Probab=94.16 E-value=0.071 Score=54.97 Aligned_cols=25 Identities=24% Similarity=0.373 Sum_probs=19.8
Q ss_pred CCEEEEEcCCCCcHHHHHHHHHHhc
Q 006122 65 HATTIIVGETGSGKTTQIPQYLKEA 89 (660)
Q Consensus 65 ~~~vii~apTGsGKT~~ip~~l~~~ 89 (660)
...+++.||+|+|||+++-.+..+.
T Consensus 84 ~~~iLL~GppGtGKT~la~ala~~~ 108 (355)
T 2qp9_X 84 TSGILLYGPPGTGKSYLAKAVATEA 108 (355)
T ss_dssp CCCEEEECSTTSCHHHHHHHHHHHH
T ss_pred CceEEEECCCCCcHHHHHHHHHHHh
Confidence 3469999999999998877666554
No 168
>3b85_A Phosphate starvation-inducible protein; PHOH2, ATPase, PFAM: PF02562, ST genomics, PSI-2, protein structure initiative; 2.35A {Corynebacterium glutamicum atcc 13032}
Probab=93.97 E-value=0.042 Score=51.96 Aligned_cols=39 Identities=21% Similarity=0.183 Sum_probs=31.0
Q ss_pred CcHHHHHHHHHHHhcCCEEEEEcCCCCcHHHHHHHHHHh
Q 006122 50 PVYKYRTAILYLVETHATTIIVGETGSGKTTQIPQYLKE 88 (660)
Q Consensus 50 Pi~~~~~~i~~~l~~~~~vii~apTGsGKT~~ip~~l~~ 88 (660)
|-..-+..+++.+..++.+.|.||+||||||++-.+.-.
T Consensus 7 pk~~g~~~~l~~i~~Ge~~~liG~nGsGKSTLl~~l~Gl 45 (208)
T 3b85_A 7 PKTLGQKHYVDAIDTNTIVFGLGPAGSGKTYLAMAKAVQ 45 (208)
T ss_dssp CCSHHHHHHHHHHHHCSEEEEECCTTSSTTHHHHHHHHH
T ss_pred cCCHhHHHHHHhccCCCEEEEECCCCCCHHHHHHHHhcC
Confidence 433445678888999999999999999999988766543
No 169
>3pvs_A Replication-associated recombination protein A; maintenance of genome stability Pro recombination; 2.50A {Escherichia coli}
Probab=93.87 E-value=0.077 Score=56.49 Aligned_cols=32 Identities=28% Similarity=0.344 Sum_probs=23.0
Q ss_pred HHHHHhcCC--EEEEEcCCCCcHHHHHHHHHHhc
Q 006122 58 ILYLVETHA--TTIIVGETGSGKTTQIPQYLKEA 89 (660)
Q Consensus 58 i~~~l~~~~--~vii~apTGsGKT~~ip~~l~~~ 89 (660)
+...+..++ .+++.||+|+|||+++-.+....
T Consensus 41 L~~~i~~~~~~~vLL~GppGtGKTtlAr~ia~~~ 74 (447)
T 3pvs_A 41 LPRAIEAGHLHSMILWGPPGTGKTTLAEVIARYA 74 (447)
T ss_dssp HHHHHHHTCCCEEEEECSTTSSHHHHHHHHHHHT
T ss_pred HHHHHHcCCCcEEEEECCCCCcHHHHHHHHHHHh
Confidence 345555554 59999999999998876655443
No 170
>1j8m_F SRP54, signal recognition 54 kDa protein; signaling protein; 2.00A {Acidianus ambivalens} SCOP: a.24.13.1 c.37.1.10 PDB: 1j8y_F
Probab=93.83 E-value=0.21 Score=49.89 Aligned_cols=123 Identities=23% Similarity=0.218 Sum_probs=62.5
Q ss_pred CCEEEEEcCCCCcHHHHHHHHHHhccccCCCeE-EEEeCchHHHHHHHHHHHHHHhCCeeeeEEeeeeeccccCCCCCce
Q 006122 65 HATTIIVGETGSGKTTQIPQYLKEAGWADGGRV-IACTQPRRLAVQAVASRVAEEMGVKVGEEVGYTIRFEDFTNKDLTA 143 (660)
Q Consensus 65 ~~~vii~apTGsGKT~~ip~~l~~~~~~~~~~~-i~v~p~r~la~~~~~~~~~~~~~~~~~~~vg~~~~~~~~~~~~~~~ 143 (660)
+.++.+.|++|+||||.+..+...... .++++ ++-..+++-++....+..++..+..+-. +. ..
T Consensus 98 ~~vi~i~G~~G~GKTT~~~~la~~~~~-~g~~v~l~~~D~~r~~a~~ql~~~~~~~~v~v~~--~~--------~~---- 162 (297)
T 1j8m_F 98 PYVIMLVGVQGTGKTTTAGKLAYFYKK-KGFKVGLVGADVYRPAALEQLQQLGQQIGVPVYG--EP--------GE---- 162 (297)
T ss_dssp SEEEEEECSSCSSTTHHHHHHHHHHHH-TTCCEEEEECCCSSSHHHHHHHHHHHHHTCCEEC--CT--------TC----
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHHH-CCCeEEEEecCCCCHHHHHHHHHHhccCCeEEEe--cC--------CC----
Confidence 347888999999999888766655433 34444 4444455444443333334444443211 10 00
Q ss_pred EEEechHHHHHHHhcCCCCCCCcEEEEeCCCcCCc--ChhHHHHHHHHHH-HhcCCceEEEeeccc
Q 006122 144 IKFLTDGVLLREMMDDPLLTKYSVIMVDEAHERSI--STDILLGLLKKIQ-RCRSDLRLIISSATI 206 (660)
Q Consensus 144 I~v~T~~~ll~~l~~~~~l~~~~~iIiDE~Her~~--~~d~ll~~l~~~~-~~~~~~kii~~SAT~ 206 (660)
..|..++........-.++++||||=+- +.. ..+.+...++.+. ...++.-++.+.|+.
T Consensus 163 ---~~p~~~~~~~l~~~~~~~~D~ViIDTpg-~~~~~~~~~l~~el~~i~~~~~~d~vllVvda~~ 224 (297)
T 1j8m_F 163 ---KDVVGIAKRGVEKFLSEKMEIIIVDTAG-RHGYGEEAALLEEMKNIYEAIKPDEVTLVIDASI 224 (297)
T ss_dssp ---CCHHHHHHHHHHHHHHTTCSEEEEECCC-SCCTTCHHHHHHHHHHHHHHHCCSEEEEEEEGGG
T ss_pred ---CCHHHHHHHHHHHHHhCCCCEEEEeCCC-CcccccHHHHHHHHHHHHHHhcCCEEEEEeeCCc
Confidence 1233333222111001478999999987 333 3333333333332 234566666777764
No 171
>2eyu_A Twitching motility protein PILT; pilus retraction motor, C-terminal domain PILT, protein transport; 1.87A {Aquifex aeolicus}
Probab=93.50 E-value=0.041 Score=54.01 Aligned_cols=27 Identities=30% Similarity=0.468 Sum_probs=22.8
Q ss_pred HhcCCEEEEEcCCCCcHHHHHHHHHHh
Q 006122 62 VETHATTIIVGETGSGKTTQIPQYLKE 88 (660)
Q Consensus 62 l~~~~~vii~apTGsGKT~~ip~~l~~ 88 (660)
+..+..++|+|||||||||++-.++..
T Consensus 22 i~~g~~v~i~Gp~GsGKSTll~~l~g~ 48 (261)
T 2eyu_A 22 HRKMGLILVTGPTGSGKSTTIASMIDY 48 (261)
T ss_dssp GCSSEEEEEECSTTCSHHHHHHHHHHH
T ss_pred hCCCCEEEEECCCCccHHHHHHHHHHh
Confidence 567889999999999999988766544
No 172
>2j37_W Signal recognition particle 54 kDa protein (SRP54); ribosome, SRP, translation/RNA; 8.00A {Canis SP} PDB: 1wgw_A
Probab=93.46 E-value=0.38 Score=51.70 Aligned_cols=122 Identities=17% Similarity=0.201 Sum_probs=61.4
Q ss_pred EEEEEcCCCCcHHHHHHHHHHhccccCCCeEEEE-eCchHHHHHHHHHHHHHHhCCeeeeEEeeeeeccccCCCCCceEE
Q 006122 67 TTIIVGETGSGKTTQIPQYLKEAGWADGGRVIAC-TQPRRLAVQAVASRVAEEMGVKVGEEVGYTIRFEDFTNKDLTAIK 145 (660)
Q Consensus 67 ~vii~apTGsGKT~~ip~~l~~~~~~~~~~~i~v-~p~r~la~~~~~~~~~~~~~~~~~~~vg~~~~~~~~~~~~~~~I~ 145 (660)
+++++|++|+||||++-.++..... .+.++.++ .-+.+.++....+......++.+. +. ....
T Consensus 103 vI~ivG~~GvGKTTl~~kLA~~l~~-~G~kVllVd~D~~r~aa~~qL~~~~~~~~i~v~---~~------~~~~------ 166 (504)
T 2j37_W 103 VIMFVGLQGSGKTTTCSKLAYYYQR-KGWKTCLICADTFRAGAFDQLKQNATKARIPFY---GS------YTEM------ 166 (504)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHHHH-TTCCEEEEEECCSSSHHHHHHHHHHHHHTCCEE---EC------CCCS------
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHh-CCCeEEEEeccccchhHHHHHHHHhhccCceEE---cc------CCCC------
Confidence 6888999999999988877765432 23444333 334444443333333334444321 10 0001
Q ss_pred EechHHHHHHHhcCCCCCCCcEEEEeCCCcCCcChhHHHHHHHHHHHhcCCceEEEeeccc
Q 006122 146 FLTDGVLLREMMDDPLLTKYSVIMVDEAHERSISTDILLGLLKKIQRCRSDLRLIISSATI 206 (660)
Q Consensus 146 v~T~~~ll~~l~~~~~l~~~~~iIiDE~Her~~~~d~ll~~l~~~~~~~~~~kii~~SAT~ 206 (660)
.|..+...........+++++|||-+-....+.++...+.+......++.-++++.|+.
T Consensus 167 --dp~~i~~~al~~~~~~~~DvvIIDTpG~~~~~~~l~~el~~~~~~i~pd~vllVvDa~~ 225 (504)
T 2j37_W 167 --DPVIIASEGVEKFKNENFEIIIVDTSGRHKQEDSLFEEMLQVANAIQPDNIVYVMDASI 225 (504)
T ss_dssp --CHHHHHHHHHHHHHHTTCCEEEEEECCCCTTCHHHHHHHHHHHHHHCCSEEEEEEETTC
T ss_pred --CHHHHHHHHHHHHHHCCCcEEEEeCCCCcccchhHHHHHHHHHhhhcCceEEEEEeccc
Confidence 12122111110000146899999998733333334333322222235676678888886
No 173
>2chq_A Replication factor C small subunit; DNA-binding protein, DNA replication, clamp loader, AAA+ ATP ATP-binding, nucleotide-binding; HET: ANP; 3.5A {Archaeoglobus fulgidus} PDB: 2chv_A
Probab=93.23 E-value=0.077 Score=53.38 Aligned_cols=22 Identities=23% Similarity=0.440 Sum_probs=17.9
Q ss_pred EEEEEcCCCCcHHHHHHHHHHh
Q 006122 67 TTIIVGETGSGKTTQIPQYLKE 88 (660)
Q Consensus 67 ~vii~apTGsGKT~~ip~~l~~ 88 (660)
++++.||+|+|||+++-.+...
T Consensus 40 ~~ll~G~~G~GKt~la~~l~~~ 61 (319)
T 2chq_A 40 HLLFSGPPGTGKTATAIALARD 61 (319)
T ss_dssp CEEEESSSSSSHHHHHHHHHHH
T ss_pred eEEEECcCCcCHHHHHHHHHHH
Confidence 5999999999999877655544
No 174
>4b4t_J 26S protease regulatory subunit 8 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=93.22 E-value=0.16 Score=52.74 Aligned_cols=25 Identities=24% Similarity=0.324 Sum_probs=19.3
Q ss_pred CCEEEEEcCCCCcHHHHHHHHHHhc
Q 006122 65 HATTIIVGETGSGKTTQIPQYLKEA 89 (660)
Q Consensus 65 ~~~vii~apTGsGKT~~ip~~l~~~ 89 (660)
.+-+++.||+|||||.++-.+..+.
T Consensus 182 prGvLL~GPPGTGKTllAkAiA~e~ 206 (405)
T 4b4t_J 182 PKGVILYGPPGTGKTLLARAVAHHT 206 (405)
T ss_dssp CCCEEEESCSSSSHHHHHHHHHHHH
T ss_pred CCceEEeCCCCCCHHHHHHHHHHhh
Confidence 4669999999999997766555444
No 175
>2zan_A Vacuolar protein sorting-associating protein 4B; SKD1, VPS4B, AAA ATPase, ATP-binding, coiled coil, membrane, nucleotide-binding, phosphorylation; HET: ATP; 3.00A {Mus musculus} PDB: 2zam_A* 2zao_A* 2jqh_A 2jqk_A 1wr0_A 2jq9_A 2k3w_A 1yxr_A
Probab=93.20 E-value=0.14 Score=54.50 Aligned_cols=25 Identities=24% Similarity=0.360 Sum_probs=20.2
Q ss_pred CCEEEEEcCCCCcHHHHHHHHHHhc
Q 006122 65 HATTIIVGETGSGKTTQIPQYLKEA 89 (660)
Q Consensus 65 ~~~vii~apTGsGKT~~ip~~l~~~ 89 (660)
.+.+++.||+|+|||+++-.+..+.
T Consensus 167 ~~~vLL~GppGtGKT~lA~aia~~~ 191 (444)
T 2zan_A 167 WRGILLFGPPGTGKSYLAKAVATEA 191 (444)
T ss_dssp CSEEEEECSTTSSHHHHHHHHHHHC
T ss_pred CceEEEECCCCCCHHHHHHHHHHHc
Confidence 4679999999999998877665554
No 176
>1kgd_A CASK, peripheral plasma membrane CASK; maguk, guanylate kinase like domain, protein binding; 1.31A {Homo sapiens} SCOP: c.37.1.1
Probab=93.15 E-value=0.056 Score=49.68 Aligned_cols=25 Identities=16% Similarity=0.380 Sum_probs=21.2
Q ss_pred cCCEEEEEcCCCCcHHHHHHHHHHh
Q 006122 64 THATTIIVGETGSGKTTQIPQYLKE 88 (660)
Q Consensus 64 ~~~~vii~apTGsGKT~~ip~~l~~ 88 (660)
.++.++|+||+||||||++-.+...
T Consensus 4 ~g~~i~i~GpsGsGKSTL~~~L~~~ 28 (180)
T 1kgd_A 4 MRKTLVLLGAHGVGRRHIKNTLITK 28 (180)
T ss_dssp CCCEEEEECCTTSSHHHHHHHHHHH
T ss_pred CCCEEEEECCCCCCHHHHHHHHHhh
Confidence 4678999999999999998776654
No 177
>2xxa_A Signal recognition particle protein; protein transport, RNA/RNA binding protein, hydrolase, gtpas; HET: GCP; 3.94A {Escherichia coli} PDB: 2j28_9
Probab=93.10 E-value=0.32 Score=51.33 Aligned_cols=123 Identities=20% Similarity=0.241 Sum_probs=59.4
Q ss_pred CEEEEEcCCCCcHHHHHHHHHHhccccCCCeE-EEEeCchHHHHHHHHHHHHHHhCCeeeeEEeeeeeccccCCCCCceE
Q 006122 66 ATTIIVGETGSGKTTQIPQYLKEAGWADGGRV-IACTQPRRLAVQAVASRVAEEMGVKVGEEVGYTIRFEDFTNKDLTAI 144 (660)
Q Consensus 66 ~~vii~apTGsGKT~~ip~~l~~~~~~~~~~~-i~v~p~r~la~~~~~~~~~~~~~~~~~~~vg~~~~~~~~~~~~~~~I 144 (660)
.+++++|++|+||||.+..+........+.++ ++-+-+.+-++.......+...+..+-. + .. .
T Consensus 101 ~vI~ivG~~GvGKTT~a~~LA~~l~~~~G~kVllvd~D~~r~~a~~ql~~~~~~~~l~v~~--~---------~~-~--- 165 (433)
T 2xxa_A 101 AVVLMAGLQGAGKTTSVGKLGKFLREKHKKKVLVVSADVYRPAAIKQLETLAEQVGVDFFP--S---------DV-G--- 165 (433)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHHHHHTSCCCEEEEECCCSSTTHHHHHHHHHHHHTCEECC--C---------CS-S---
T ss_pred eEEEEECCCCCCHHHHHHHHHHHHHHhcCCeEEEEecCCCCccHHHHHHhhcccCCeeEEe--C---------CC-C---
Confidence 47888899999999888777655543314444 3334444444433223334444443210 0 00 0
Q ss_pred EEechHHHHHHHhcCCCCCCCcEEEEeCCCcCCcChhHHHHHHHHHHH-hcCCceEEEeeccc
Q 006122 145 KFLTDGVLLREMMDDPLLTKYSVIMVDEAHERSISTDILLGLLKKIQR-CRSDLRLIISSATI 206 (660)
Q Consensus 145 ~v~T~~~ll~~l~~~~~l~~~~~iIiDE~Her~~~~d~ll~~l~~~~~-~~~~~kii~~SAT~ 206 (660)
.+|..++..........++++||||=+- +....+.+...+..+.. ..++.-++.+.|+.
T Consensus 166 --~dp~~i~~~~l~~~~~~~~D~VIIDTpG-~l~~~~~l~~~L~~~~~~~~p~~vllVvda~~ 225 (433)
T 2xxa_A 166 --QKPVDIVNAALKEAKLKFYDVLLVDTAG-RLHVDEAMMDEIKQVHASINPVETLFVVDAMT 225 (433)
T ss_dssp --SCHHHHHHHHHHHHHHTTCSEEEEECCC-CCTTCHHHHHHHHHHHHHSCCSEEEEEEETTB
T ss_pred --CCHHHHHHHHHHHHHhCCCCEEEEECCC-cccccHHHHHHHHHHHHhhcCcceeEEeecch
Confidence 1344432222111001468999999975 33222233333333332 34444455566654
No 178
>3jvv_A Twitching mobility protein; hexameric P-loop ATPase, secretion ATPase, ATP-binding, FIMB nucleotide-binding, transport; HET: ACP CIT; 2.60A {Pseudomonas aeruginosa} PDB: 3jvu_A*
Probab=93.09 E-value=0.069 Score=54.95 Aligned_cols=42 Identities=21% Similarity=0.338 Sum_probs=27.4
Q ss_pred HhcCCEEEEEcCCCCcHHHHHHHHHHhccccCCCeEEEEeCc
Q 006122 62 VETHATTIIVGETGSGKTTQIPQYLKEAGWADGGRVIACTQP 103 (660)
Q Consensus 62 l~~~~~vii~apTGsGKT~~ip~~l~~~~~~~~~~~i~v~p~ 103 (660)
...+..++|+|||||||||++-.++.......++.++.+-.|
T Consensus 120 ~~~~g~i~I~GptGSGKTTlL~~l~g~~~~~~~~~i~t~ed~ 161 (356)
T 3jvv_A 120 DVPRGLVLVTGPTGSGKSTTLAAMLDYLNNTKYHHILTIEDP 161 (356)
T ss_dssp HCSSEEEEEECSTTSCHHHHHHHHHHHHHHHCCCEEEEEESS
T ss_pred hCCCCEEEEECCCCCCHHHHHHHHHhcccCCCCcEEEEccCc
Confidence 345668999999999999988766554332223444444433
No 179
>3tr0_A Guanylate kinase, GMP kinase; purines, pyrimidines, nucleosides, nucleotides, transferase; HET: 5GP; 1.85A {Coxiella burnetii}
Probab=92.78 E-value=0.062 Score=50.29 Aligned_cols=27 Identities=26% Similarity=0.414 Sum_probs=21.8
Q ss_pred HhcCCEEEEEcCCCCcHHHHHHHHHHh
Q 006122 62 VETHATTIIVGETGSGKTTQIPQYLKE 88 (660)
Q Consensus 62 l~~~~~vii~apTGsGKT~~ip~~l~~ 88 (660)
+..+..+.|.||+||||||++-.+...
T Consensus 4 m~~g~ii~l~Gp~GsGKSTl~~~L~~~ 30 (205)
T 3tr0_A 4 MNKANLFIISAPSGAGKTSLVRALVKA 30 (205)
T ss_dssp -CCCCEEEEECCTTSCHHHHHHHHHHH
T ss_pred CCCCcEEEEECcCCCCHHHHHHHHHhh
Confidence 456889999999999999998766543
No 180
>3hgt_A HDA1 complex subunit 3; RECA-like domain, SWI2/SNF2 helical domain, chromatin regulator, coiled coil, nucleus, repressor, transcription; 2.20A {Saccharomyces cerevisiae} PDB: 3hgq_A
Probab=92.71 E-value=0.42 Score=47.88 Aligned_cols=111 Identities=11% Similarity=-0.034 Sum_probs=65.0
Q ss_pred CCCCcEEEEcCCHHHHHHHHHHHHHHhhhccCCCCCeEEEEccCCCCHHHHhhhcCCCCCCCcEEEEeCCCcccccC---
Q 006122 274 EPPGDILVFLTGQDDIDATIQLLTEEARTSKKNSSGLIILPLYSGLSRAEQEQVFSPTPRGKRKVVISTNIAETSLT--- 350 (660)
Q Consensus 274 ~~~~~iLVF~~~~~~i~~l~~~L~~~~~~~~~~~~~~~v~~lh~~l~~~~r~~v~~~f~~g~~~vlvaT~i~e~Gid--- 350 (660)
..+.+||||+...+..+-+.+.+.. .++....+.|.....++ +. .+....|.+.|....-|++
T Consensus 123 ~~~~kVLIfsq~t~~LDilE~~l~~---------~~~~y~RlDG~~~~~~~-k~----~~~~~~i~Lltsag~~gin~~~ 188 (328)
T 3hgt_A 123 EYETETAIVCRPGRTMDLLEALLLG---------NKVHIKRYDGHSIKSAA-AA----NDFSCTVHLFSSEGINFTKYPI 188 (328)
T ss_dssp TSCEEEEEEECSTHHHHHHHHHHTT---------SSCEEEESSSCCC------------CCSEEEEEEESSCCCTTTSCC
T ss_pred hCCCEEEEEECChhHHHHHHHHHhc---------CCCceEeCCCCchhhhh-hc----ccCCceEEEEECCCCCCcCccc
Confidence 3567899999998888777776643 37888899988544332 21 2455677676776666675
Q ss_pred --CCCeEEEEeCCCccceeecCCCCcccceeeecCH-HhHHHhhcccC--CCCCcEEEEccChHHhhh
Q 006122 351 --LEGIVYVVDSGFSKQRFYNPISDIENLVVAPISK-ASARQRAGRAG--RVRPGKCYRLYTEEYFVK 413 (660)
Q Consensus 351 --ip~v~~VId~g~~k~~~~~~~~~~~~l~~~~~s~-~~~~QR~GRaG--R~~~G~~~~l~~~~~~~~ 413 (660)
.-..+.||- ||+..+.. +. -+++.|+-|.| +.++-.+|||++....++
T Consensus 189 ~nl~~aD~VI~--------~DsdwNp~-------~d~iQa~~r~~R~~~gq~k~v~V~RLvt~~TiEh 241 (328)
T 3hgt_A 189 KSKARFDMLIC--------LDTTVDTS-------QKDIQYLLQYKRERKGLERYAPIVRLVAINSIDH 241 (328)
T ss_dssp CCCSCCSEEEE--------CSTTCCTT-------SHHHHHHHCCC---------CCEEEEEETTSHHH
T ss_pred ccCCCCCEEEE--------ECCCCCCC-------ChHHHHHHHHhhhccCCCCcceEEEEeCCCCHHH
Confidence 456677775 55554422 22 23333444442 235667999998776655
No 181
>1lvg_A Guanylate kinase, GMP kinase; transferase; HET: ADP 5GP; 2.10A {Mus musculus} SCOP: c.37.1.1
Probab=92.68 E-value=0.059 Score=50.44 Aligned_cols=26 Identities=23% Similarity=0.520 Sum_probs=19.7
Q ss_pred hcCCEEEEEcCCCCcHHHHHHHHHHh
Q 006122 63 ETHATTIIVGETGSGKTTQIPQYLKE 88 (660)
Q Consensus 63 ~~~~~vii~apTGsGKT~~ip~~l~~ 88 (660)
..++.++|+||+||||||++-.+...
T Consensus 2 ~~g~~i~lvGpsGaGKSTLl~~L~~~ 27 (198)
T 1lvg_A 2 AGPRPVVLSGPSGAGKSTLLKKLFQE 27 (198)
T ss_dssp ---CCEEEECCTTSSHHHHHHHHHHH
T ss_pred CCCCEEEEECCCCCCHHHHHHHHHhh
Confidence 35678999999999999998766543
No 182
>3pxi_A Negative regulator of genetic competence CLPC/MEC; CLPB, proteolysis, CLPX, HSP100/CLP, AAA+ proteins, PR binding; 6.93A {Bacillus subtilis}
Probab=92.62 E-value=0.37 Score=55.06 Aligned_cols=22 Identities=32% Similarity=0.444 Sum_probs=17.3
Q ss_pred EEEEEcCCCCcHHHHHHHHHHh
Q 006122 67 TTIIVGETGSGKTTQIPQYLKE 88 (660)
Q Consensus 67 ~vii~apTGsGKT~~ip~~l~~ 88 (660)
++++.||||+|||+++-.+...
T Consensus 523 ~~Ll~Gp~GtGKT~lA~ala~~ 544 (758)
T 3pxi_A 523 SFIFLGPTGVGKTELARALAES 544 (758)
T ss_dssp EEEEESCTTSSHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHH
Confidence 6999999999999766544433
No 183
>2gza_A Type IV secretion system protein VIRB11; ATPase, hydrolase; 2.60A {Brucella suis}
Probab=92.51 E-value=0.11 Score=53.73 Aligned_cols=43 Identities=30% Similarity=0.397 Sum_probs=30.4
Q ss_pred HHHHHHhcCCEEEEEcCCCCcHHHHHHHHHHhccccCCCeEEEEe
Q 006122 57 AILYLVETHATTIIVGETGSGKTTQIPQYLKEAGWADGGRVIACT 101 (660)
Q Consensus 57 ~i~~~l~~~~~vii~apTGsGKT~~ip~~l~~~~~~~~~~~i~v~ 101 (660)
.+--.+..+..++|+|||||||||++-.++.... .....|.+-
T Consensus 167 ~l~~~i~~G~~i~ivG~sGsGKSTll~~l~~~~~--~~~g~I~ie 209 (361)
T 2gza_A 167 FLRRAVQLERVIVVAGETGSGKTTLMKALMQEIP--FDQRLITIE 209 (361)
T ss_dssp HHHHHHHTTCCEEEEESSSSCHHHHHHHHHTTSC--TTSCEEEEE
T ss_pred HHHHHHhcCCEEEEECCCCCCHHHHHHHHHhcCC--CCceEEEEC
Confidence 3444567899999999999999999887665432 233345454
No 184
>3b9q_A Chloroplast SRP receptor homolog, alpha subunit CPFTSY; protein translocation, GTP-binding, nucleotide-binding, protein transport; 1.75A {Arabidopsis thaliana}
Probab=92.43 E-value=0.14 Score=51.38 Aligned_cols=44 Identities=30% Similarity=0.424 Sum_probs=28.6
Q ss_pred cCCEEEEEcCCCCcHHHHHHHHHHhccccCCCeEEEEe-CchHHHH
Q 006122 64 THATTIIVGETGSGKTTQIPQYLKEAGWADGGRVIACT-QPRRLAV 108 (660)
Q Consensus 64 ~~~~vii~apTGsGKT~~ip~~l~~~~~~~~~~~i~v~-p~r~la~ 108 (660)
.+.++.+.||+||||||++-.+...... .++++.+.. .+.+.++
T Consensus 99 ~g~vi~lvG~nGsGKTTll~~Lag~l~~-~~g~V~l~g~d~~r~~a 143 (302)
T 3b9q_A 99 KPAVIMIVGVNGGGKTTSLGKLAHRLKN-EGTKVLMAAGDTFRAAA 143 (302)
T ss_dssp SCEEEEEECCTTSCHHHHHHHHHHHHHH-TTCCEEEECCCCSCHHH
T ss_pred CCcEEEEEcCCCCCHHHHHHHHHHHHHH-cCCeEEEEeecccchhH
Confidence 3568899999999999988776654432 344454443 3444444
No 185
>2v3c_C SRP54, signal recognition 54 kDa protein; nucleotide-binding, signal recognition particle, GTP-binding, RNA-binding; 2.50A {Methanocaldococcus jannaschii} PDB: 3ndb_B
Probab=92.40 E-value=0.06 Score=56.94 Aligned_cols=24 Identities=33% Similarity=0.481 Sum_probs=19.7
Q ss_pred CEEEEEcCCCCcHHHHHHHHHHhc
Q 006122 66 ATTIIVGETGSGKTTQIPQYLKEA 89 (660)
Q Consensus 66 ~~vii~apTGsGKT~~ip~~l~~~ 89 (660)
.+++++|++|+||||++-.+....
T Consensus 100 ~vI~ivG~~GvGKTTla~~La~~l 123 (432)
T 2v3c_C 100 NVILLVGIQGSGKTTTAAKLARYI 123 (432)
T ss_dssp CCEEEECCSSSSTTHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHHH
Confidence 378899999999998887766554
No 186
>2zts_A Putative uncharacterized protein PH0186; KAIC like protein, ATP-binding, nucleotide-binding, ATP- binding protein; HET: ADP; 2.07A {Pyrococcus horikoshii}
Probab=92.39 E-value=0.061 Score=52.04 Aligned_cols=42 Identities=26% Similarity=0.329 Sum_probs=31.0
Q ss_pred HhcCCEEEEEcCCCCcHHHHHHHHHHhccccCCCeEEEEeCc
Q 006122 62 VETHATTIIVGETGSGKTTQIPQYLKEAGWADGGRVIACTQP 103 (660)
Q Consensus 62 l~~~~~vii~apTGsGKT~~ip~~l~~~~~~~~~~~i~v~p~ 103 (660)
+..+..++|.|++|+|||++.-+++.+.....+.++++++-.
T Consensus 27 l~~G~l~~i~G~pG~GKT~l~l~~~~~~~~~~~~~v~~~s~E 68 (251)
T 2zts_A 27 FPEGTTVLLTGGTGTGKTTFAAQFIYKGAEEYGEPGVFVTLE 68 (251)
T ss_dssp EETTCEEEEECCTTSSHHHHHHHHHHHHHHHHCCCEEEEESS
T ss_pred CCCCeEEEEEeCCCCCHHHHHHHHHHHHHHhcCCCceeeccc
Confidence 345789999999999999888887776544344556676543
No 187
>4b4t_H 26S protease regulatory subunit 7 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=92.37 E-value=0.22 Score=52.53 Aligned_cols=26 Identities=19% Similarity=0.282 Sum_probs=20.2
Q ss_pred cCCEEEEEcCCCCcHHHHHHHHHHhc
Q 006122 64 THATTIIVGETGSGKTTQIPQYLKEA 89 (660)
Q Consensus 64 ~~~~vii~apTGsGKT~~ip~~l~~~ 89 (660)
..+-+++.||+|||||+++-.+..+.
T Consensus 242 pprGILLyGPPGTGKTlLAkAiA~e~ 267 (467)
T 4b4t_H 242 PPKGILLYGPPGTGKTLCARAVANRT 267 (467)
T ss_dssp CCSEEEECSCTTSSHHHHHHHHHHHH
T ss_pred CCCceEeeCCCCCcHHHHHHHHHhcc
Confidence 45779999999999997766555444
No 188
>2oap_1 GSPE-2, type II secretion system protein; hexameric ATPase, hydrolase; HET: ANP; 2.95A {Archaeoglobus fulgidus} PDB: 2oaq_1
Probab=92.35 E-value=0.13 Score=55.70 Aligned_cols=33 Identities=33% Similarity=0.459 Sum_probs=25.7
Q ss_pred HHHHHHHhcCCEEEEEcCCCCcHHHHHHHHHHh
Q 006122 56 TAILYLVETHATTIIVGETGSGKTTQIPQYLKE 88 (660)
Q Consensus 56 ~~i~~~l~~~~~vii~apTGsGKT~~ip~~l~~ 88 (660)
+.+-..+..+.+++|+|||||||||++-.++..
T Consensus 251 ~~l~~~v~~g~~i~I~GptGSGKTTlL~aL~~~ 283 (511)
T 2oap_1 251 AYLWLAIEHKFSAIVVGETASGKTTTLNAIMMF 283 (511)
T ss_dssp HHHHHHHHTTCCEEEEESTTSSHHHHHHHHGGG
T ss_pred HHHHHHHhCCCEEEEECCCCCCHHHHHHHHHhh
Confidence 344455678889999999999999998765443
No 189
>2ce7_A Cell division protein FTSH; metalloprotease; HET: ADP; 2.44A {Thermotoga maritima} SCOP: a.269.1.1 c.37.1.20 PDB: 2cea_A* 3kds_E*
Probab=92.32 E-value=0.17 Score=54.05 Aligned_cols=24 Identities=33% Similarity=0.436 Sum_probs=19.1
Q ss_pred CEEEEEcCCCCcHHHHHHHHHHhc
Q 006122 66 ATTIIVGETGSGKTTQIPQYLKEA 89 (660)
Q Consensus 66 ~~vii~apTGsGKT~~ip~~l~~~ 89 (660)
+.+++.||+|+|||+++-.+..+.
T Consensus 50 ~gvLL~GppGtGKT~Laraia~~~ 73 (476)
T 2ce7_A 50 KGILLVGPPGTGKTLLARAVAGEA 73 (476)
T ss_dssp SEEEEECCTTSSHHHHHHHHHHHH
T ss_pred CeEEEECCCCCCHHHHHHHHHHHc
Confidence 569999999999998876655443
No 190
>4b4t_I 26S protease regulatory subunit 4 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=92.17 E-value=0.24 Score=51.76 Aligned_cols=25 Identities=24% Similarity=0.355 Sum_probs=19.3
Q ss_pred CCEEEEEcCCCCcHHHHHHHHHHhc
Q 006122 65 HATTIIVGETGSGKTTQIPQYLKEA 89 (660)
Q Consensus 65 ~~~vii~apTGsGKT~~ip~~l~~~ 89 (660)
.+-+++.||+|||||.++-.+..+.
T Consensus 216 prGvLLyGPPGTGKTlLAkAiA~e~ 240 (437)
T 4b4t_I 216 PKGVILYGAPGTGKTLLAKAVANQT 240 (437)
T ss_dssp CSEEEEESSTTTTHHHHHHHHHHHH
T ss_pred CCCCceECCCCchHHHHHHHHHHHh
Confidence 4679999999999997665555444
No 191
>3tau_A Guanylate kinase, GMP kinase; structural genomics, center for structural genomics of infec diseases, csgid, putative guanylate kinase; HET: MSE; 2.05A {Listeria monocytogenes}
Probab=92.14 E-value=0.089 Score=49.58 Aligned_cols=26 Identities=27% Similarity=0.391 Sum_probs=21.7
Q ss_pred hcCCEEEEEcCCCCcHHHHHHHHHHh
Q 006122 63 ETHATTIIVGETGSGKTTQIPQYLKE 88 (660)
Q Consensus 63 ~~~~~vii~apTGsGKT~~ip~~l~~ 88 (660)
..+..++++||+||||||++-.+...
T Consensus 6 ~~g~~i~l~GpsGsGKsTl~~~L~~~ 31 (208)
T 3tau_A 6 ERGLLIVLSGPSGVGKGTVREAVFKD 31 (208)
T ss_dssp CCCCEEEEECCTTSCHHHHHHHHHHS
T ss_pred CCCcEEEEECcCCCCHHHHHHHHHhh
Confidence 35788999999999999998766544
No 192
>4b4t_M 26S protease regulatory subunit 6A; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=92.08 E-value=0.19 Score=52.81 Aligned_cols=25 Identities=20% Similarity=0.324 Sum_probs=19.6
Q ss_pred CCEEEEEcCCCCcHHHHHHHHHHhc
Q 006122 65 HATTIIVGETGSGKTTQIPQYLKEA 89 (660)
Q Consensus 65 ~~~vii~apTGsGKT~~ip~~l~~~ 89 (660)
.+-+++.||+|||||+++-.+..+.
T Consensus 215 prGvLLyGPPGTGKTllAkAiA~e~ 239 (434)
T 4b4t_M 215 PKGALMYGPPGTGKTLLARACAAQT 239 (434)
T ss_dssp CCEEEEESCTTSSHHHHHHHHHHHH
T ss_pred CCeeEEECcCCCCHHHHHHHHHHHh
Confidence 4679999999999997766555444
No 193
>2ehv_A Hypothetical protein PH0186; KAIC, RECA ATPase, unknown function; HET: ADP; 2.07A {Pyrococcus horikoshii} PDB: 2zts_A*
Probab=91.97 E-value=0.073 Score=51.50 Aligned_cols=42 Identities=26% Similarity=0.298 Sum_probs=28.3
Q ss_pred HHhcCCEEEEEcCCCCcHHHHHHHHHHhccccCCCeEEEEeC
Q 006122 61 LVETHATTIIVGETGSGKTTQIPQYLKEAGWADGGRVIACTQ 102 (660)
Q Consensus 61 ~l~~~~~vii~apTGsGKT~~ip~~l~~~~~~~~~~~i~v~p 102 (660)
.+..+..+.|.||+||||||++-.++.......+...+++..
T Consensus 26 gi~~G~~~~l~GpnGsGKSTLl~~i~~~~~~~~~~~~~~~~~ 67 (251)
T 2ehv_A 26 GFPEGTTVLLTGGTGTGKTTFAAQFIYKGAEEYGEPGVFVTL 67 (251)
T ss_dssp SEETTCEEEEECCTTSSHHHHHHHHHHHHHHHHCCCEEEEES
T ss_pred CCCCCcEEEEEeCCCCCHHHHHHHHHHHHHHhCCCeEEEEEc
Confidence 356789999999999999999877663322122333455543
No 194
>1z6g_A Guanylate kinase; structural genomics, SGC, structural genom consortium, transferase; HET: EPE; 2.18A {Plasmodium falciparum}
Probab=91.96 E-value=0.084 Score=50.22 Aligned_cols=28 Identities=32% Similarity=0.457 Sum_probs=22.2
Q ss_pred HhcCCEEEEEcCCCCcHHHHHHHHHHhc
Q 006122 62 VETHATTIIVGETGSGKTTQIPQYLKEA 89 (660)
Q Consensus 62 l~~~~~vii~apTGsGKT~~ip~~l~~~ 89 (660)
+..++.+.|.||+||||||++-.+....
T Consensus 20 i~~G~~~~lvGpsGsGKSTLl~~L~g~~ 47 (218)
T 1z6g_A 20 MNNIYPLVICGPSGVGKGTLIKKLLNEF 47 (218)
T ss_dssp --CCCCEEEECSTTSSHHHHHHHHHHHS
T ss_pred cCCCCEEEEECCCCCCHHHHHHHHHhhC
Confidence 5678899999999999999988765543
No 195
>2ewv_A Twitching motility protein PILT; pilus retraction motor, ATPase, hexameric PILT, protein TRAN; HET: ADP; 2.80A {Aquifex aeolicus} PDB: 2eww_A* 2gsz_A*
Probab=91.96 E-value=0.092 Score=54.44 Aligned_cols=42 Identities=24% Similarity=0.381 Sum_probs=28.3
Q ss_pred HhcCCEEEEEcCCCCcHHHHHHHHHHhccccCCCeEEEEeCc
Q 006122 62 VETHATTIIVGETGSGKTTQIPQYLKEAGWADGGRVIACTQP 103 (660)
Q Consensus 62 l~~~~~vii~apTGsGKT~~ip~~l~~~~~~~~~~~i~v~p~ 103 (660)
+..+..++|+|||||||||++-.++........+.++++-.+
T Consensus 133 ~~~g~~i~ivG~~GsGKTTll~~l~~~~~~~~~g~I~~~e~~ 174 (372)
T 2ewv_A 133 HRKMGLILVTGPTGSGKSTTIASMIDYINQTKSYHIITIEDP 174 (372)
T ss_dssp TSSSEEEEEECSSSSSHHHHHHHHHHHHHHHSCCEEEEEESS
T ss_pred hcCCCEEEEECCCCCCHHHHHHHHHhhcCcCCCcEEEEeccc
Confidence 456789999999999999998776654322213444444433
No 196
>3ney_A 55 kDa erythrocyte membrane protein; structural genomics consortium, SGC, 55 kDa erythrocyte MEMB protein; 2.26A {Homo sapiens} SCOP: c.37.1.0
Probab=91.91 E-value=0.1 Score=48.67 Aligned_cols=26 Identities=19% Similarity=0.436 Sum_probs=22.0
Q ss_pred cCCEEEEEcCCCCcHHHHHHHHHHhc
Q 006122 64 THATTIIVGETGSGKTTQIPQYLKEA 89 (660)
Q Consensus 64 ~~~~vii~apTGsGKT~~ip~~l~~~ 89 (660)
.++.++|+||+|+||||++-.++...
T Consensus 18 ~g~~ivl~GPSGaGKsTL~~~L~~~~ 43 (197)
T 3ney_A 18 GRKTLVLIGASGVGRSHIKNALLSQN 43 (197)
T ss_dssp SCCEEEEECCTTSSHHHHHHHHHHHC
T ss_pred CCCEEEEECcCCCCHHHHHHHHHhhC
Confidence 67889999999999999988766543
No 197
>1uaa_A REP helicase, protein (ATP-dependent DNA helicase REP.); complex (helicase/DNA), DNA unwinding, hydrolase/DNA complex; HET: DNA; 3.00A {Escherichia coli} SCOP: c.37.1.19 c.37.1.19
Probab=91.90 E-value=0.19 Score=56.60 Aligned_cols=66 Identities=18% Similarity=0.356 Sum_probs=42.6
Q ss_pred cHHHHHHHHHHHhcCCEEEEEcCCCCcHHHHHHHHHH----hccccCCCeEEEEeCchHHHHHHHHHHHHHHhC
Q 006122 51 VYKYRTAILYLVETHATTIIVGETGSGKTTQIPQYLK----EAGWADGGRVIACTQPRRLAVQAVASRVAEEMG 120 (660)
Q Consensus 51 i~~~~~~i~~~l~~~~~vii~apTGsGKT~~ip~~l~----~~~~~~~~~~i~v~p~r~la~~~~~~~~~~~~~ 120 (660)
+.+.|.+++.. .+..++|.|+.|||||+.+-.-+. ..+. ...+++++|.|+.. +.++.+|+.+..+
T Consensus 3 L~~~Q~~av~~--~~~~~lV~AgaGSGKT~~l~~ri~~ll~~~~~-~~~~IL~lTfT~~A-a~em~~Rl~~~l~ 72 (673)
T 1uaa_A 3 LNPGQQQAVEF--VTGPCLVLAGAGSGKTRVITNKIAHLIRGCGY-QARHIAAVTFTNKA-AREMKERVGQTLG 72 (673)
T ss_dssp CCHHHHHHHHC--CSSEEEECCCTTSCHHHHHHHHHHHHHHHHCC-CGGGEEEEESSHHH-HHHHHHHHHHHSC
T ss_pred CCHHHHHHHhC--CCCCEEEEeCCCCChHHHHHHHHHHHHHhcCC-CHHHeEEEeccHHH-HHHHHHHHHHHcC
Confidence 45667777664 367799999999999965543222 2121 33457888877655 4467777776654
No 198
>4b4t_L 26S protease subunit RPT4; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=91.88 E-value=0.24 Score=52.13 Aligned_cols=25 Identities=20% Similarity=0.274 Sum_probs=19.8
Q ss_pred CCEEEEEcCCCCcHHHHHHHHHHhc
Q 006122 65 HATTIIVGETGSGKTTQIPQYLKEA 89 (660)
Q Consensus 65 ~~~vii~apTGsGKT~~ip~~l~~~ 89 (660)
.+-+++.||+|||||+++-.+..+.
T Consensus 215 prGvLL~GPPGtGKTllAkAiA~e~ 239 (437)
T 4b4t_L 215 PKGVLLYGPPGTGKTLLAKAVAATI 239 (437)
T ss_dssp CCEEEEESCTTSSHHHHHHHHHHHH
T ss_pred CCeEEEECCCCCcHHHHHHHHHHHh
Confidence 4679999999999997776655544
No 199
>1jbk_A CLPB protein; beta barrel, chaperone; 1.80A {Escherichia coli} SCOP: c.37.1.20
Probab=91.83 E-value=0.2 Score=45.61 Aligned_cols=35 Identities=17% Similarity=0.371 Sum_probs=24.7
Q ss_pred HHHHHHHHHhc--CCEEEEEcCCCCcHHHHHHHHHHh
Q 006122 54 YRTAILYLVET--HATTIIVGETGSGKTTQIPQYLKE 88 (660)
Q Consensus 54 ~~~~i~~~l~~--~~~vii~apTGsGKT~~ip~~l~~ 88 (660)
..+++.+.+.. ...+++.||+|+|||+++-.+...
T Consensus 30 ~~~~l~~~l~~~~~~~~ll~G~~G~GKT~l~~~~~~~ 66 (195)
T 1jbk_A 30 EIRRTIQVLQRRTKNNPVLIGEPGVGKTAIVEGLAQR 66 (195)
T ss_dssp HHHHHHHHHTSSSSCEEEEECCTTSCHHHHHHHHHHH
T ss_pred HHHHHHHHHhcCCCCceEEECCCCCCHHHHHHHHHHH
Confidence 34445555543 367999999999999887655544
No 200
>1p9r_A General secretion pathway protein E; bacterial type II secretion system cytoplasmic protein - GSPE, putative ATPase/ ATP binding protein; 2.50A {Vibrio cholerae} SCOP: c.37.1.11 PDB: 1p9w_A*
Probab=91.80 E-value=0.22 Score=52.38 Aligned_cols=37 Identities=27% Similarity=0.442 Sum_probs=25.7
Q ss_pred hcCCEEEEEcCCCCcHHHHHHHHHHhccccCCCeEEEE
Q 006122 63 ETHATTIIVGETGSGKTTQIPQYLKEAGWADGGRVIAC 100 (660)
Q Consensus 63 ~~~~~vii~apTGsGKT~~ip~~l~~~~~~~~~~~i~v 100 (660)
..+..++|+|||||||||++-.++..... ..+.+++.
T Consensus 165 ~~ggii~I~GpnGSGKTTlL~allg~l~~-~~g~I~~~ 201 (418)
T 1p9r_A 165 RPHGIILVTGPTGSGKSTTLYAGLQELNS-SERNILTV 201 (418)
T ss_dssp SSSEEEEEECSTTSCHHHHHHHHHHHHCC-TTSCEEEE
T ss_pred hcCCeEEEECCCCCCHHHHHHHHHhhcCC-CCCEEEEe
Confidence 34668999999999999998876654432 23444444
No 201
>2cvh_A DNA repair and recombination protein RADB; filament formation, homologous recombination, ATPase domain, hyperthermophIle; HET: DNA; 2.20A {Thermococcus kodakarensis} PDB: 2cvf_A*
Probab=91.72 E-value=0.1 Score=49.26 Aligned_cols=39 Identities=26% Similarity=0.126 Sum_probs=29.9
Q ss_pred HHhcCCEEEEEcCCCCcHHHHHHHHHHhccccCCCeEEEEeCc
Q 006122 61 LVETHATTIIVGETGSGKTTQIPQYLKEAGWADGGRVIACTQP 103 (660)
Q Consensus 61 ~l~~~~~vii~apTGsGKT~~ip~~l~~~~~~~~~~~i~v~p~ 103 (660)
-+..+..++|.||+|+||||++-+++. ..+.+++++...
T Consensus 16 gi~~G~~~~i~G~~GsGKTtl~~~l~~----~~~~~v~~i~~~ 54 (220)
T 2cvh_A 16 GFAPGVLTQVYGPYASGKTTLALQTGL----LSGKKVAYVDTE 54 (220)
T ss_dssp SBCTTSEEEEECSTTSSHHHHHHHHHH----HHCSEEEEEESS
T ss_pred CCcCCEEEEEECCCCCCHHHHHHHHHH----HcCCcEEEEECC
Confidence 345688999999999999998887776 234567777644
No 202
>1znw_A Guanylate kinase, GMP kinase; ATP:GMP-phosphotransferase, TR; 2.10A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1znx_A* 1zny_A* 1znz_A* 1s4q_A 1z8f_A
Probab=91.70 E-value=0.11 Score=49.00 Aligned_cols=28 Identities=14% Similarity=0.232 Sum_probs=21.7
Q ss_pred HHhcCCEEEEEcCCCCcHHHHHHHHHHh
Q 006122 61 LVETHATTIIVGETGSGKTTQIPQYLKE 88 (660)
Q Consensus 61 ~l~~~~~vii~apTGsGKT~~ip~~l~~ 88 (660)
.+..++.+.|.||+||||||++-.+.-.
T Consensus 16 ~i~~Gei~~l~GpnGsGKSTLl~~l~gl 43 (207)
T 1znw_A 16 PAAVGRVVVLSGPSAVGKSTVVRCLRER 43 (207)
T ss_dssp ---CCCEEEEECSTTSSHHHHHHHHHHH
T ss_pred CCCCCCEEEEECCCCCCHHHHHHHHHhh
Confidence 5788999999999999999988766543
No 203
>4gp7_A Metallophosphoesterase; polynucleotide kinase phosphatase, RNA repair, transferase; HET: ATP CIT; 2.00A {Clostridium thermocellum} PDB: 4gp6_A*
Probab=91.68 E-value=0.052 Score=49.45 Aligned_cols=22 Identities=27% Similarity=0.527 Sum_probs=19.3
Q ss_pred hcCCEEEEEcCCCCcHHHHHHH
Q 006122 63 ETHATTIIVGETGSGKTTQIPQ 84 (660)
Q Consensus 63 ~~~~~vii~apTGsGKT~~ip~ 84 (660)
..+..+.+.||+||||||++-.
T Consensus 7 ~~gei~~l~G~nGsGKSTl~~~ 28 (171)
T 4gp7_A 7 PELSLVVLIGSSGSGKSTFAKK 28 (171)
T ss_dssp ESSEEEEEECCTTSCHHHHHHH
T ss_pred CCCEEEEEECCCCCCHHHHHHH
Confidence 4678899999999999998875
No 204
>1n0w_A DNA repair protein RAD51 homolog 1; DNA repair, homologous recombination, breast cancer susceptibility, RECA-like ATPase, protein complex; HET: DNA MSE; 1.70A {Homo sapiens} SCOP: c.37.1.11
Probab=91.66 E-value=0.14 Score=49.24 Aligned_cols=42 Identities=21% Similarity=0.216 Sum_probs=30.5
Q ss_pred HhcCCEEEEEcCCCCcHHHHHHHHHHhccccC-----CCeEEEEeCc
Q 006122 62 VETHATTIIVGETGSGKTTQIPQYLKEAGWAD-----GGRVIACTQP 103 (660)
Q Consensus 62 l~~~~~vii~apTGsGKT~~ip~~l~~~~~~~-----~~~~i~v~p~ 103 (660)
+..+..++|.||+|+|||+++-+++....... +.+++++.-.
T Consensus 21 i~~G~~~~i~G~~GsGKTtl~~~l~~~~~~~~~~g~~~~~~~~i~~~ 67 (243)
T 1n0w_A 21 IETGSITEMFGEFRTGKTQICHTLAVTCQLPIDRGGGEGKAMYIDTE 67 (243)
T ss_dssp EETTSEEEEECCTTSSHHHHHHHHHHHTTSCGGGTCCSSEEEEEESS
T ss_pred CcCCeEEEEECCCCCcHHHHHHHHHHHHhCchhcCCCCCeEEEEECC
Confidence 45688999999999999999888877533321 3556766543
No 205
>1s96_A Guanylate kinase, GMP kinase; E.coli, dimer, SAD, transferase; 2.00A {Escherichia coli} SCOP: c.37.1.1 PDB: 2an9_A* 2anb_A* 2anc_A 2f3r_A* 2f3t_A*
Probab=91.56 E-value=0.11 Score=49.35 Aligned_cols=29 Identities=24% Similarity=0.377 Sum_probs=22.4
Q ss_pred HHhcCCEEEEEcCCCCcHHHHHHHHHHhc
Q 006122 61 LVETHATTIIVGETGSGKTTQIPQYLKEA 89 (660)
Q Consensus 61 ~l~~~~~vii~apTGsGKT~~ip~~l~~~ 89 (660)
.+..+..++|.||+||||||++-.+....
T Consensus 12 ~~~~G~ii~l~GpsGsGKSTLlk~L~g~~ 40 (219)
T 1s96_A 12 HMAQGTLYIVSAPSGAGKSSLIQALLKTQ 40 (219)
T ss_dssp ---CCCEEEEECCTTSCHHHHHHHHHHHS
T ss_pred cCCCCcEEEEECCCCCCHHHHHHHHhccC
Confidence 35678999999999999999988765543
No 206
>2pt7_A CAG-ALFA; ATPase, protein-protein complex, type IV secretion, hydrolas binding complex; 2.40A {Helicobacter pylori} SCOP: c.37.1.11 PDB: 1nly_A* 1nlz_A 1opx_A* 1g6o_A
Probab=91.56 E-value=0.14 Score=52.18 Aligned_cols=31 Identities=35% Similarity=0.390 Sum_probs=24.6
Q ss_pred HHHHHhcCCEEEEEcCCCCcHHHHHHHHHHh
Q 006122 58 ILYLVETHATTIIVGETGSGKTTQIPQYLKE 88 (660)
Q Consensus 58 i~~~l~~~~~vii~apTGsGKT~~ip~~l~~ 88 (660)
+--.+..+..+.|+|||||||||++-.++..
T Consensus 164 l~~~i~~g~~v~i~G~~GsGKTTll~~l~g~ 194 (330)
T 2pt7_A 164 IKDGIAIGKNVIVCGGTGSGKTTYIKSIMEF 194 (330)
T ss_dssp HHHHHHHTCCEEEEESTTSCHHHHHHHGGGG
T ss_pred hhhhccCCCEEEEECCCCCCHHHHHHHHhCC
Confidence 3345678999999999999999988765544
No 207
>1cr0_A DNA primase/helicase; RECA-type protein fold, transferase; HET: DNA; 2.30A {Enterobacteria phage T7} SCOP: c.37.1.11 PDB: 1cr1_A* 1cr2_A* 1cr4_A* 1e0j_A* 1e0k_A*
Probab=91.53 E-value=0.11 Score=51.77 Aligned_cols=45 Identities=20% Similarity=0.131 Sum_probs=32.0
Q ss_pred HHHHHhcCCEEEEEcCCCCcHHHHHHHHHHhccccCCCeEEEEeC
Q 006122 58 ILYLVETHATTIIVGETGSGKTTQIPQYLKEAGWADGGRVIACTQ 102 (660)
Q Consensus 58 i~~~l~~~~~vii~apTGsGKT~~ip~~l~~~~~~~~~~~i~v~p 102 (660)
+.-.+..+..++|.||+|+||||++-+++.......+.+++++..
T Consensus 28 i~~~l~~G~~~~i~G~~G~GKTTl~~~ia~~~~~~~G~~v~~~~~ 72 (296)
T 1cr0_A 28 KTLGARGGEVIMVTSGSGMGKSTFVRQQALQWGTAMGKKVGLAML 72 (296)
T ss_dssp HHCSBCTTCEEEEEESTTSSHHHHHHHHHHHHHHTSCCCEEEEES
T ss_pred HhcCCCCCeEEEEEeCCCCCHHHHHHHHHHHHHHHcCCeEEEEeC
Confidence 333456789999999999999998887766554333435666654
No 208
>1zp6_A Hypothetical protein ATU3015; alpha-beta protein., structural genomics, PSI, protein struc initiative; 3.20A {Agrobacterium tumefaciens str} SCOP: c.37.1.25
Probab=91.51 E-value=0.072 Score=49.22 Aligned_cols=26 Identities=23% Similarity=0.259 Sum_probs=21.8
Q ss_pred HhcCCEEEEEcCCCCcHHHHHHHHHH
Q 006122 62 VETHATTIIVGETGSGKTTQIPQYLK 87 (660)
Q Consensus 62 l~~~~~vii~apTGsGKT~~ip~~l~ 87 (660)
+..+..+++.||+||||||++-.+..
T Consensus 6 i~~g~~i~l~G~~GsGKSTl~~~La~ 31 (191)
T 1zp6_A 6 DLGGNILLLSGHPGSGKSTIAEALAN 31 (191)
T ss_dssp CCTTEEEEEEECTTSCHHHHHHHHHT
T ss_pred CCCCeEEEEECCCCCCHHHHHHHHHh
Confidence 45678899999999999999876654
No 209
>4b4t_K 26S protease regulatory subunit 6B homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=91.49 E-value=0.37 Score=50.64 Aligned_cols=25 Identities=20% Similarity=0.371 Sum_probs=19.6
Q ss_pred CCEEEEEcCCCCcHHHHHHHHHHhc
Q 006122 65 HATTIIVGETGSGKTTQIPQYLKEA 89 (660)
Q Consensus 65 ~~~vii~apTGsGKT~~ip~~l~~~ 89 (660)
.+-+++.||+|||||+++-.+..+.
T Consensus 206 prGiLL~GPPGtGKT~lakAiA~~~ 230 (428)
T 4b4t_K 206 PRGVLLYGPPGTGKTMLVKAVANST 230 (428)
T ss_dssp CCEEEEESCTTTTHHHHHHHHHHHH
T ss_pred CceEEEECCCCCCHHHHHHHHHHHh
Confidence 4569999999999997776655544
No 210
>2j41_A Guanylate kinase; GMP, GMK, transferase, ATP-binding, nucleotide- binding; HET: 5GP; 1.9A {Staphylococcus aureus}
Probab=91.41 E-value=0.11 Score=48.57 Aligned_cols=26 Identities=23% Similarity=0.332 Sum_probs=21.1
Q ss_pred HhcCCEEEEEcCCCCcHHHHHHHHHH
Q 006122 62 VETHATTIIVGETGSGKTTQIPQYLK 87 (660)
Q Consensus 62 l~~~~~vii~apTGsGKT~~ip~~l~ 87 (660)
+..+..++|.||+||||||++-.+..
T Consensus 3 i~~g~~i~l~G~~GsGKSTl~~~L~~ 28 (207)
T 2j41_A 3 NEKGLLIVLSGPSGVGKGTVRKRIFE 28 (207)
T ss_dssp -CCCCEEEEECSTTSCHHHHHHHHHH
T ss_pred CCCCCEEEEECCCCCCHHHHHHHHHH
Confidence 35678899999999999999876544
No 211
>2dr3_A UPF0273 protein PH0284; RECA superfamily ATPase, hexamer, structural genomics; HET: ADP; 2.00A {Pyrococcus horikoshii}
Probab=91.36 E-value=0.12 Score=49.76 Aligned_cols=41 Identities=22% Similarity=0.239 Sum_probs=30.2
Q ss_pred HhcCCEEEEEcCCCCcHHHHHHHHHHhccccCCCeEEEEeCc
Q 006122 62 VETHATTIIVGETGSGKTTQIPQYLKEAGWADGGRVIACTQP 103 (660)
Q Consensus 62 l~~~~~vii~apTGsGKT~~ip~~l~~~~~~~~~~~i~v~p~ 103 (660)
+..+..++|.||+|+|||+++-+++..... .+.+++++...
T Consensus 20 l~~G~~~~i~G~~GsGKTtl~~~~~~~~~~-~~~~v~~~~~e 60 (247)
T 2dr3_A 20 IPERNVVLLSGGPGTGKTIFSQQFLWNGLK-MGEPGIYVALE 60 (247)
T ss_dssp EETTCEEEEEECTTSSHHHHHHHHHHHHHH-TTCCEEEEESS
T ss_pred CCCCcEEEEECCCCCCHHHHHHHHHHHHHh-cCCeEEEEEcc
Confidence 456889999999999999887777665432 34567777654
No 212
>3a00_A Guanylate kinase, GMP kinase; domain movement, dimerization, acetylation, ATP-binding, nucleotide-binding, phosphoprotein, transferase; 1.80A {Saccharomyces cerevisiae} PDB: 1ex6_A* 1ex7_A 1gky_A* 2zzz_A 3sqk_A 4f4j_A 2zzy_A
Probab=91.36 E-value=0.11 Score=48.04 Aligned_cols=24 Identities=29% Similarity=0.578 Sum_probs=19.8
Q ss_pred CCEEEEEcCCCCcHHHHHHHHHHh
Q 006122 65 HATTIIVGETGSGKTTQIPQYLKE 88 (660)
Q Consensus 65 ~~~vii~apTGsGKT~~ip~~l~~ 88 (660)
++.++|.||+||||||++-.+...
T Consensus 1 ~~ii~l~GpsGaGKsTl~~~L~~~ 24 (186)
T 3a00_A 1 SRPIVISGPSGTGKSTLLKKLFAE 24 (186)
T ss_dssp CCCEEEESSSSSSHHHHHHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHHhh
Confidence 457899999999999998776644
No 213
>2og2_A Putative signal recognition particle receptor; nucleotide-binding, protein transport; 2.00A {Arabidopsis thaliana}
Probab=91.33 E-value=0.21 Score=51.27 Aligned_cols=43 Identities=30% Similarity=0.433 Sum_probs=28.0
Q ss_pred CCEEEEEcCCCCcHHHHHHHHHHhccccCCCeEEEEe-CchHHHH
Q 006122 65 HATTIIVGETGSGKTTQIPQYLKEAGWADGGRVIACT-QPRRLAV 108 (660)
Q Consensus 65 ~~~vii~apTGsGKT~~ip~~l~~~~~~~~~~~i~v~-p~r~la~ 108 (660)
+.++.+.||+||||||++-.+...... .++++.+.. .+.+.++
T Consensus 157 g~vi~lvG~nGsGKTTll~~Lag~l~~-~~G~V~l~g~D~~r~~a 200 (359)
T 2og2_A 157 PAVIMIVGVNGGGKTTSLGKLAHRLKN-EGTKVLMAAGDTFRAAA 200 (359)
T ss_dssp SEEEEEECCTTSCHHHHHHHHHHHHHH-TTCCEEEECCCCSCHHH
T ss_pred CeEEEEEcCCCChHHHHHHHHHhhccc-cCCEEEEecccccccch
Confidence 457899999999999988766554432 344454443 3444444
No 214
>3hu3_A Transitional endoplasmic reticulum ATPase; VCP, transport protein; HET: AGS; 2.20A {Homo sapiens} PDB: 3hu2_A* 3hu1_A* 1e32_A* 1s3s_A*
Probab=91.13 E-value=0.66 Score=49.82 Aligned_cols=25 Identities=24% Similarity=0.332 Sum_probs=19.6
Q ss_pred cCCEEEEEcCCCCcHHHHHHHHHHh
Q 006122 64 THATTIIVGETGSGKTTQIPQYLKE 88 (660)
Q Consensus 64 ~~~~vii~apTGsGKT~~ip~~l~~ 88 (660)
....+++.||+|+|||+++-.+...
T Consensus 237 ~~~~vLL~GppGtGKT~lAraia~~ 261 (489)
T 3hu3_A 237 PPRGILLYGPPGTGKTLIARAVANE 261 (489)
T ss_dssp CCCEEEEECSTTSSHHHHHHHHHHH
T ss_pred CCCcEEEECcCCCCHHHHHHHHHHH
Confidence 3467999999999999877655444
No 215
>2p65_A Hypothetical protein PF08_0063; CLPB, malaria, structural genomics, structural genomics consortium, SGC, unknown function; 1.70A {Plasmodium falciparum}
Probab=90.90 E-value=0.22 Score=45.23 Aligned_cols=34 Identities=18% Similarity=0.377 Sum_probs=24.2
Q ss_pred HHHHHHHhc--CCEEEEEcCCCCcHHHHHHHHHHhc
Q 006122 56 TAILYLVET--HATTIIVGETGSGKTTQIPQYLKEA 89 (660)
Q Consensus 56 ~~i~~~l~~--~~~vii~apTGsGKT~~ip~~l~~~ 89 (660)
+.+.+.+.. ...+++.||+|+|||+++-.+....
T Consensus 32 ~~l~~~l~~~~~~~vll~G~~G~GKT~la~~~~~~~ 67 (187)
T 2p65_A 32 RRAIQILSRRTKNNPILLGDPGVGKTAIVEGLAIKI 67 (187)
T ss_dssp HHHHHHHTSSSSCEEEEESCGGGCHHHHHHHHHHHH
T ss_pred HHHHHHHhCCCCCceEEECCCCCCHHHHHHHHHHHH
Confidence 344444443 5689999999999998877665543
No 216
>3vaa_A Shikimate kinase, SK; structural genomics, center for structural genomics of infec diseases, csgid, metal binding, transferase; 1.70A {Bacteroides thetaiotaomicron}
Probab=90.74 E-value=0.17 Score=47.19 Aligned_cols=28 Identities=21% Similarity=0.332 Sum_probs=21.9
Q ss_pred HhcCCEEEEEcCCCCcHHHHHHHHHHhc
Q 006122 62 VETHATTIIVGETGSGKTTQIPQYLKEA 89 (660)
Q Consensus 62 l~~~~~vii~apTGsGKT~~ip~~l~~~ 89 (660)
+..+..+++.|++||||||+.-.+....
T Consensus 22 ~~~~~~i~l~G~~GsGKsTl~~~La~~l 49 (199)
T 3vaa_A 22 SNAMVRIFLTGYMGAGKTTLGKAFARKL 49 (199)
T ss_dssp --CCCEEEEECCTTSCHHHHHHHHHHHH
T ss_pred cCCCCEEEEEcCCCCCHHHHHHHHHHHc
Confidence 4567889999999999999987766544
No 217
>1rj9_A FTSY, signal recognition protein; SRP-GTPase domain, heterodimer, nucleotide twinning, protein complex, protein transport; HET: GCP; 1.90A {Thermus aquaticus} SCOP: a.24.13.1 c.37.1.10 PDB: 2q9c_A* 2q9b_A* 2q9a_A* 1okk_D* 2xkv_D 2iyl_D* 2cnw_D* 2j7p_D*
Probab=90.53 E-value=0.22 Score=49.89 Aligned_cols=37 Identities=30% Similarity=0.429 Sum_probs=25.6
Q ss_pred cCCEEEEEcCCCCcHHHHHHHHHHhccccCCCeEEEEe
Q 006122 64 THATTIIVGETGSGKTTQIPQYLKEAGWADGGRVIACT 101 (660)
Q Consensus 64 ~~~~vii~apTGsGKT~~ip~~l~~~~~~~~~~~i~v~ 101 (660)
.+.++.+.||+||||||++-.+...... .++++.+..
T Consensus 101 ~g~vi~lvG~nGsGKTTll~~Lagll~~-~~g~V~l~g 137 (304)
T 1rj9_A 101 KGRVVLVVGVNGVGKTTTIAKLGRYYQN-LGKKVMFCA 137 (304)
T ss_dssp SSSEEEEECSTTSSHHHHHHHHHHHHHT-TTCCEEEEC
T ss_pred CCeEEEEECCCCCcHHHHHHHHHHHHHh-cCCEEEEEe
Confidence 3568999999999999998876654432 344444443
No 218
>1pjr_A PCRA; DNA repair, DNA replication, SOS response, helicase, ATP- binding, DNA-binding; 2.50A {Geobacillus stearothermophilus} SCOP: c.37.1.19 c.37.1.19 PDB: 1qhg_A* 3pjr_A* 2pjr_A* 1qhh_B* 1qhh_D* 1qhh_A* 1qhh_C* 2pjr_B*
Probab=90.41 E-value=0.36 Score=54.83 Aligned_cols=67 Identities=19% Similarity=0.228 Sum_probs=41.8
Q ss_pred CcHHHHHHHHHHHhcCCEEEEEcCCCCcHHHHHHHHHH---hccccCCCeEEEEeCchHHHHHHHHHHHHHHh
Q 006122 50 PVYKYRTAILYLVETHATTIIVGETGSGKTTQIPQYLK---EAGWADGGRVIACTQPRRLAVQAVASRVAEEM 119 (660)
Q Consensus 50 Pi~~~~~~i~~~l~~~~~vii~apTGsGKT~~ip~~l~---~~~~~~~~~~i~v~p~r~la~~~~~~~~~~~~ 119 (660)
.+.+.|.+++.. .+..++|.|+.|||||+.+-.-+. .........++++|-++..+. ++.+|+.+..
T Consensus 11 ~Ln~~Q~~av~~--~~g~~lV~AgAGSGKT~vL~~ri~~ll~~~~~~p~~IL~vTFTnkAA~-Em~~Rl~~~l 80 (724)
T 1pjr_A 11 HLNKEQQEAVRT--TEGPLLIMAGAGSGKTRVLTHRIAYLMAEKHVAPWNILAITFTNKAAR-EMRERVQSLL 80 (724)
T ss_dssp TSCHHHHHHHHC--CSSCEEEEECTTSCHHHHHHHHHHHHHHTTCCCGGGEEEEESSHHHHH-HHHHHHHHHH
T ss_pred hCCHHHHHHHhC--CCCCEEEEEcCCCCHHHHHHHHHHHHHHhcCCCHHHeEEEeccHHHHH-HHHHHHHHHh
Confidence 356777777764 345689999999999965543222 211112345788888776554 5666666554
No 219
>2qor_A Guanylate kinase; phosphotransferase, purine metabolism, structural genomics, structural genomics of pathogenic protozoa consortium; HET: 5GP POP; 1.80A {Plasmodium vivax}
Probab=90.20 E-value=0.14 Score=48.00 Aligned_cols=28 Identities=29% Similarity=0.436 Sum_probs=22.8
Q ss_pred HhcCCEEEEEcCCCCcHHHHHHHHHHhc
Q 006122 62 VETHATTIIVGETGSGKTTQIPQYLKEA 89 (660)
Q Consensus 62 l~~~~~vii~apTGsGKT~~ip~~l~~~ 89 (660)
+..+..++++||+||||||++-.+....
T Consensus 9 ~~~~~~i~l~G~sGsGKsTl~~~L~~~~ 36 (204)
T 2qor_A 9 MARIPPLVVCGPSGVGKGTLIKKVLSEF 36 (204)
T ss_dssp CCCCCCEEEECCTTSCHHHHHHHHHHHC
T ss_pred cccCCEEEEECCCCCCHHHHHHHHHHhC
Confidence 4567889999999999999887765543
No 220
>1htw_A HI0065; nucleotide-binding fold, structural genomics, structure 2 function project, S2F, unknown function; HET: ADP; 1.70A {Haemophilus influenzae} SCOP: c.37.1.18 PDB: 1fl9_A
Probab=89.66 E-value=0.28 Score=43.90 Aligned_cols=27 Identities=30% Similarity=0.390 Sum_probs=22.9
Q ss_pred hcCCEEEEEcCCCCcHHHHHHHHHHhc
Q 006122 63 ETHATTIIVGETGSGKTTQIPQYLKEA 89 (660)
Q Consensus 63 ~~~~~vii~apTGsGKT~~ip~~l~~~ 89 (660)
..++.+.+.||.|+||||++-.+....
T Consensus 31 ~~Ge~v~L~G~nGaGKTTLlr~l~g~l 57 (158)
T 1htw_A 31 EKAIMVYLNGDLGAGKTTLTRGMLQGI 57 (158)
T ss_dssp SSCEEEEEECSTTSSHHHHHHHHHHHT
T ss_pred CCCCEEEEECCCCCCHHHHHHHHHHhC
Confidence 678899999999999999987766544
No 221
>3lnc_A Guanylate kinase, GMP kinase; ALS collaborative crystallography, emerald biostructures, ATP-binding, cytoplasm, nucleotide-binding; HET: 5GP; 1.95A {Anaplasma phagocytophilum}
Probab=89.61 E-value=0.1 Score=50.04 Aligned_cols=25 Identities=24% Similarity=0.340 Sum_probs=17.3
Q ss_pred HhcCCEEEEEcCCCCcHHHHHHHHH
Q 006122 62 VETHATTIIVGETGSGKTTQIPQYL 86 (660)
Q Consensus 62 l~~~~~vii~apTGsGKT~~ip~~l 86 (660)
+..+..+.|.||+||||||++-.+.
T Consensus 24 v~~G~ii~l~Gp~GsGKSTl~~~L~ 48 (231)
T 3lnc_A 24 KSVGVILVLSSPSGCGKTTVANKLL 48 (231)
T ss_dssp EECCCEEEEECSCC----CHHHHHH
T ss_pred cCCCCEEEEECCCCCCHHHHHHHHH
Confidence 3568899999999999998887665
No 222
>2dhr_A FTSH; AAA+ protein, hexameric Zn metalloprotease, hydrolase; HET: ADP; 3.90A {Thermus thermophilus}
Probab=89.55 E-value=0.93 Score=48.68 Aligned_cols=24 Identities=33% Similarity=0.423 Sum_probs=19.0
Q ss_pred CEEEEEcCCCCcHHHHHHHHHHhc
Q 006122 66 ATTIIVGETGSGKTTQIPQYLKEA 89 (660)
Q Consensus 66 ~~vii~apTGsGKT~~ip~~l~~~ 89 (660)
+.+++.||+|+|||+++-.+....
T Consensus 65 ~GvLL~GppGtGKTtLaraIa~~~ 88 (499)
T 2dhr_A 65 KGVLLVGPPGVGKTHLARAVAGEA 88 (499)
T ss_dssp SEEEEECSSSSSHHHHHHHHHHHT
T ss_pred ceEEEECCCCCCHHHHHHHHHHHh
Confidence 458999999999998876655443
No 223
>3tif_A Uncharacterized ABC transporter ATP-binding prote; nucleotide-binding domain, ABC transporter ATPase; HET: ADP; 1.80A {Methanocaldococcus jannaschii dsm 2661ORGANISM_TAXID} PDB: 1l2t_A* 1f3o_A*
Probab=89.51 E-value=0.15 Score=49.16 Aligned_cols=24 Identities=29% Similarity=0.354 Sum_probs=20.9
Q ss_pred hcCCEEEEEcCCCCcHHHHHHHHH
Q 006122 63 ETHATTIIVGETGSGKTTQIPQYL 86 (660)
Q Consensus 63 ~~~~~vii~apTGsGKT~~ip~~l 86 (660)
..++.+.|.||+||||||++-.+.
T Consensus 29 ~~Ge~~~iiG~nGsGKSTLl~~l~ 52 (235)
T 3tif_A 29 KEGEFVSIMGPSGSGKSTMLNIIG 52 (235)
T ss_dssp CTTCEEEEECSTTSSHHHHHHHHT
T ss_pred cCCCEEEEECCCCCcHHHHHHHHh
Confidence 578899999999999999987654
No 224
>1ex7_A Guanylate kinase; substrate-induced FIT, domain movement, GMP, ATP, substrate specificity, X-RAY diffraction, transferase; HET: 5GP; 1.90A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 1ex6_A* 1gky_A* 3sqk_A 4f4j_A
Probab=89.48 E-value=0.22 Score=45.89 Aligned_cols=24 Identities=29% Similarity=0.551 Sum_probs=19.5
Q ss_pred CEEEEEcCCCCcHHHHHHHHHHhc
Q 006122 66 ATTIIVGETGSGKTTQIPQYLKEA 89 (660)
Q Consensus 66 ~~vii~apTGsGKT~~ip~~l~~~ 89 (660)
+-+||+||+|+||||++-.++...
T Consensus 2 RpIVi~GPSG~GK~Tl~~~L~~~~ 25 (186)
T 1ex7_A 2 RPIVISGPSGTGKSTLLKKLFAEY 25 (186)
T ss_dssp CCEEEECCTTSSHHHHHHHHHHHC
T ss_pred CEEEEECCCCCCHHHHHHHHHHhC
Confidence 458999999999999987766543
No 225
>3umf_A Adenylate kinase; rossmann fold, transferase; 2.05A {Schistosoma mansoni}
Probab=89.47 E-value=0.18 Score=47.73 Aligned_cols=29 Identities=24% Similarity=0.407 Sum_probs=23.7
Q ss_pred HhcCCEEEEEcCCCCcHHHHHHHHHHhcc
Q 006122 62 VETHATTIIVGETGSGKTTQIPQYLKEAG 90 (660)
Q Consensus 62 l~~~~~vii~apTGsGKT~~ip~~l~~~~ 90 (660)
+.+.++++|.||+||||+||...+....+
T Consensus 26 ~~k~kiI~llGpPGsGKgTqa~~L~~~~g 54 (217)
T 3umf_A 26 LAKAKVIFVLGGPGSGKGTQCEKLVQKFH 54 (217)
T ss_dssp TTSCEEEEEECCTTCCHHHHHHHHHHHHC
T ss_pred ccCCcEEEEECCCCCCHHHHHHHHHHHHC
Confidence 45667899999999999999987776553
No 226
>1kag_A SKI, shikimate kinase I; transferase, structural genomics, PSI, protein structure initiative; 2.05A {Escherichia coli} SCOP: c.37.1.2
Probab=89.44 E-value=0.21 Score=45.14 Aligned_cols=26 Identities=27% Similarity=0.388 Sum_probs=20.6
Q ss_pred cCCEEEEEcCCCCcHHHHHHHHHHhc
Q 006122 64 THATTIIVGETGSGKTTQIPQYLKEA 89 (660)
Q Consensus 64 ~~~~vii~apTGsGKT~~ip~~l~~~ 89 (660)
.+..++|.|+.||||||+.-.+....
T Consensus 3 ~~~~i~l~G~~GsGKSTl~~~La~~l 28 (173)
T 1kag_A 3 EKRNIFLVGPMGAGKSTIGRQLAQQL 28 (173)
T ss_dssp CCCCEEEECCTTSCHHHHHHHHHHHT
T ss_pred CCCeEEEECCCCCCHHHHHHHHHHHh
Confidence 35679999999999999887665443
No 227
>4eun_A Thermoresistant glucokinase; putative sugar kinase, enzyme function initiative, EFI, STRU genomics, transferase; 1.60A {Janibacter SP}
Probab=89.39 E-value=0.23 Score=46.28 Aligned_cols=27 Identities=33% Similarity=0.466 Sum_probs=21.5
Q ss_pred hcCCEEEEEcCCCCcHHHHHHHHHHhc
Q 006122 63 ETHATTIIVGETGSGKTTQIPQYLKEA 89 (660)
Q Consensus 63 ~~~~~vii~apTGsGKT~~ip~~l~~~ 89 (660)
..+..++|.||.||||||++-.+....
T Consensus 27 ~~g~~i~l~G~~GsGKSTl~~~L~~~~ 53 (200)
T 4eun_A 27 EPTRHVVVMGVSGSGKTTIAHGVADET 53 (200)
T ss_dssp -CCCEEEEECCTTSCHHHHHHHHHHHH
T ss_pred CCCcEEEEECCCCCCHHHHHHHHHHhh
Confidence 357899999999999999987665443
No 228
>3a8t_A Adenylate isopentenyltransferase; rossmann fold protein; HET: ATP; 2.37A {Humulus lupulus}
Probab=89.30 E-value=0.18 Score=51.11 Aligned_cols=24 Identities=21% Similarity=0.371 Sum_probs=18.9
Q ss_pred cCCEEEEEcCCCCcHHHHHHHHHH
Q 006122 64 THATTIIVGETGSGKTTQIPQYLK 87 (660)
Q Consensus 64 ~~~~vii~apTGsGKT~~ip~~l~ 87 (660)
.+..++|+||||||||++.-.+..
T Consensus 39 ~~~lIvI~GPTgsGKTtLa~~LA~ 62 (339)
T 3a8t_A 39 KEKLLVLMGATGTGKSRLSIDLAA 62 (339)
T ss_dssp CCEEEEEECSTTSSHHHHHHHHHT
T ss_pred CCceEEEECCCCCCHHHHHHHHHH
Confidence 345899999999999987765543
No 229
>3cmu_A Protein RECA, recombinase A; homologous recombination, recombination/DNA complex; HET: DNA ADP; 4.20A {Escherichia coli}
Probab=89.26 E-value=0.31 Score=60.51 Aligned_cols=40 Identities=25% Similarity=0.205 Sum_probs=31.5
Q ss_pred cCCEEEEEcCCCCcHHHHHHHHHHhccccCCCeEEEEeCch
Q 006122 64 THATTIIVGETGSGKTTQIPQYLKEAGWADGGRVIACTQPR 104 (660)
Q Consensus 64 ~~~~vii~apTGsGKT~~ip~~l~~~~~~~~~~~i~v~p~r 104 (660)
.+.++++.||+|+|||++.-+++.+.. ..+.+++++...-
T Consensus 1426 ~g~~vll~GppGtGKT~LA~ala~ea~-~~G~~v~Fi~~e~ 1465 (2050)
T 3cmu_A 1426 MGRIVEIYGPESSGKTTLTLQVIAAAQ-REGKTCAFIDAEH 1465 (2050)
T ss_dssp TTSEEEEECCTTSSHHHHHHHHHHHHH-TTTCCEEEECTTS
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHH-HcCCcEEEEEccc
Confidence 588999999999999988888877664 3466677776553
No 230
>3exa_A TRNA delta(2)-isopentenylpyrophosphate transferase; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; 2.30A {Bacillus halodurans} PDB: 2qgn_A
Probab=89.18 E-value=0.21 Score=49.96 Aligned_cols=24 Identities=33% Similarity=0.329 Sum_probs=18.8
Q ss_pred CCEEEEEcCCCCcHHHHHHHHHHh
Q 006122 65 HATTIIVGETGSGKTTQIPQYLKE 88 (660)
Q Consensus 65 ~~~vii~apTGsGKT~~ip~~l~~ 88 (660)
...++|+||||||||++.-.+...
T Consensus 3 ~~~i~i~GptgsGKt~la~~La~~ 26 (322)
T 3exa_A 3 EKLVAIVGPTAVGKTKTSVMLAKR 26 (322)
T ss_dssp CEEEEEECCTTSCHHHHHHHHHHT
T ss_pred CcEEEEECCCcCCHHHHHHHHHHh
Confidence 457899999999999877655443
No 231
>1gm5_A RECG; helicase, replication restart; HET: DNA ADP; 3.24A {Thermotoga maritima} SCOP: a.24.21.1 b.40.4.9 c.37.1.19 c.37.1.19
Probab=89.16 E-value=0.45 Score=54.16 Aligned_cols=78 Identities=14% Similarity=0.107 Sum_probs=65.5
Q ss_pred CCcEEEEcCCHHHHHHHHHHHHHHhhhccCCCCCeEEEEccCCCCHHHHhhhcCCCCCCCcEEEEeCCC-cccccCCCCe
Q 006122 276 PGDILVFLTGQDDIDATIQLLTEEARTSKKNSSGLIILPLYSGLSRAEQEQVFSPTPRGKRKVVISTNI-AETSLTLEGI 354 (660)
Q Consensus 276 ~~~iLVF~~~~~~i~~l~~~L~~~~~~~~~~~~~~~v~~lh~~l~~~~r~~v~~~f~~g~~~vlvaT~i-~e~Gidip~v 354 (660)
+.+++|.+|++.=++..++.+.+.+.. .++.+..+||+++..++..+++...+|..+|+|+|.. +...+.+.++
T Consensus 417 g~qvlvlaPtr~La~Q~~~~l~~~~~~-----~gi~v~~l~G~~~~~~r~~~~~~l~~g~~~IvVgT~~ll~~~~~~~~l 491 (780)
T 1gm5_A 417 GFQTAFMVPTSILAIQHYRRTVESFSK-----FNIHVALLIGATTPSEKEKIKSGLRNGQIDVVIGTHALIQEDVHFKNL 491 (780)
T ss_dssp TSCEEEECSCHHHHHHHHHHHHHHHTC-----SSCCEEECCSSSCHHHHHHHHHHHHSSCCCEEEECTTHHHHCCCCSCC
T ss_pred CCeEEEEeCcHHHHHHHHHHHHHHhhh-----cCceEEEEeCCCCHHHHHHHHHHHhcCCCCEEEECHHHHhhhhhccCC
Confidence 568999999999999999988887532 2578999999999999998888888899999999974 4456788888
Q ss_pred EEEE
Q 006122 355 VYVV 358 (660)
Q Consensus 355 ~~VI 358 (660)
.+||
T Consensus 492 ~lVV 495 (780)
T 1gm5_A 492 GLVI 495 (780)
T ss_dssp CEEE
T ss_pred ceEE
Confidence 8776
No 232
>4aby_A DNA repair protein RECN; hydrolase, double strand break repair, ATPase, nucleotide binding domain; HET: DNA; 3.00A {Deinococcus radiodurans}
Probab=89.15 E-value=0.63 Score=48.77 Aligned_cols=39 Identities=10% Similarity=0.274 Sum_probs=28.9
Q ss_pred cEEEEeCCCcCCcChhHHHHHHHHHHHhcCCceEEEeecc
Q 006122 166 SVIMVDEAHERSISTDILLGLLKKIQRCRSDLRLIISSAT 205 (660)
Q Consensus 166 ~~iIiDE~Her~~~~d~ll~~l~~~~~~~~~~kii~~SAT 205 (660)
.++|+||.. -+++......+.+.+.....+.++|+.|--
T Consensus 317 ~~LlLDEpt-~~LD~~~~~~l~~~L~~l~~~~~vi~itH~ 355 (415)
T 4aby_A 317 PSVVFDEVD-AGIGGAAAIAVAEQLSRLADTRQVLVVTHL 355 (415)
T ss_dssp SEEEESSTT-TTCCHHHHHHHHHHHHHHTTTSEEEEECSC
T ss_pred CEEEEECCC-CCCCHHHHHHHHHHHHHHhCCCEEEEEeCc
Confidence 899999998 578877777777776665556777776544
No 233
>1qvr_A CLPB protein; coiled coil, AAA ATPase, chaperone; HET: ANP; 3.00A {Thermus thermophilus} SCOP: a.174.1.1 c.37.1.20 c.37.1.20
Probab=89.08 E-value=0.45 Score=55.16 Aligned_cols=33 Identities=18% Similarity=0.446 Sum_probs=23.1
Q ss_pred HHHHHHHhc--CCEEEEEcCCCCcHHHHHHHHHHh
Q 006122 56 TAILYLVET--HATTIIVGETGSGKTTQIPQYLKE 88 (660)
Q Consensus 56 ~~i~~~l~~--~~~vii~apTGsGKT~~ip~~l~~ 88 (660)
..+++.+.. .+++++.||+|+|||+++-.+...
T Consensus 180 ~~l~~~l~~~~~~~vlL~G~pG~GKT~la~~la~~ 214 (854)
T 1qvr_A 180 RRVIQILLRRTKNNPVLIGEPGVGKTAIVEGLAQR 214 (854)
T ss_dssp HHHHHHHHCSSCCCCEEEECTTSCHHHHHHHHHHH
T ss_pred HHHHHHHhcCCCCceEEEcCCCCCHHHHHHHHHHH
Confidence 344444433 357999999999999887666544
No 234
>3trf_A Shikimate kinase, SK; amino acid biosynthesis, transferase; 2.60A {Coxiella burnetii}
Probab=89.00 E-value=0.28 Score=44.89 Aligned_cols=25 Identities=28% Similarity=0.340 Sum_probs=20.6
Q ss_pred CCEEEEEcCCCCcHHHHHHHHHHhc
Q 006122 65 HATTIIVGETGSGKTTQIPQYLKEA 89 (660)
Q Consensus 65 ~~~vii~apTGsGKT~~ip~~l~~~ 89 (660)
...+++.|++||||||+.-.+....
T Consensus 5 ~~~i~l~G~~GsGKst~a~~La~~l 29 (185)
T 3trf_A 5 LTNIYLIGLMGAGKTSVGSQLAKLT 29 (185)
T ss_dssp CCEEEEECSTTSSHHHHHHHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHHHHh
Confidence 5679999999999999887765544
No 235
>3lw7_A Adenylate kinase related protein (ADKA-like); AMP, PSI, MCSG, structural genomics, midwest center for structural genomics; HET: AMP; 2.30A {Sulfolobus solfataricus} PDB: 3h0k_A
Probab=88.92 E-value=0.22 Score=44.75 Aligned_cols=20 Identities=30% Similarity=0.416 Sum_probs=17.5
Q ss_pred CEEEEEcCCCCcHHHHHHHH
Q 006122 66 ATTIIVGETGSGKTTQIPQY 85 (660)
Q Consensus 66 ~~vii~apTGsGKT~~ip~~ 85 (660)
.++++.|++||||||+.-.+
T Consensus 2 ~~I~l~G~~GsGKsT~a~~L 21 (179)
T 3lw7_A 2 KVILITGMPGSGKSEFAKLL 21 (179)
T ss_dssp CEEEEECCTTSCHHHHHHHH
T ss_pred cEEEEECCCCCCHHHHHHHH
Confidence 36889999999999988766
No 236
>3c8u_A Fructokinase; YP_612366.1, putative fructose transport system kinase, STRU genomics, joint center for structural genomics, JCSG; 1.95A {Silicibacter SP}
Probab=88.91 E-value=0.2 Score=47.11 Aligned_cols=25 Identities=24% Similarity=0.298 Sum_probs=20.1
Q ss_pred cCCEEEEEcCCCCcHHHHHHHHHHh
Q 006122 64 THATTIIVGETGSGKTTQIPQYLKE 88 (660)
Q Consensus 64 ~~~~vii~apTGsGKT~~ip~~l~~ 88 (660)
.+..+.|.||+||||||++-.+...
T Consensus 21 ~g~~v~I~G~sGsGKSTl~~~l~~~ 45 (208)
T 3c8u_A 21 GRQLVALSGAPGSGKSTLSNPLAAA 45 (208)
T ss_dssp SCEEEEEECCTTSCTHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHH
Confidence 4678999999999999988655443
No 237
>2z43_A DNA repair and recombination protein RADA; archaea, filament, DNA binding, molecular SWI RECA, DMC1; HET: DNA; 1.93A {Sulfolobus solfataricus} PDB: 2bke_A* 2dfl_A* 2zub_A* 2zuc_A* 2zud_A*
Probab=88.86 E-value=0.3 Score=49.53 Aligned_cols=43 Identities=28% Similarity=0.326 Sum_probs=31.8
Q ss_pred HhcCCEEEEEcCCCCcHHHHHHHHHHhccccC-----CCeEEEEeCch
Q 006122 62 VETHATTIIVGETGSGKTTQIPQYLKEAGWAD-----GGRVIACTQPR 104 (660)
Q Consensus 62 l~~~~~vii~apTGsGKT~~ip~~l~~~~~~~-----~~~~i~v~p~r 104 (660)
+..+..++|.||+|+|||+++-+++....... +.+++++.-..
T Consensus 104 l~~G~i~~i~G~~GsGKT~la~~la~~~~~~~~~gg~~~~vlyi~~e~ 151 (324)
T 2z43_A 104 IETRTMTEFFGEFGSGKTQLCHQLSVNVQLPPEKGGLSGKAVYIDTEG 151 (324)
T ss_dssp EETTSEEEEEESTTSSHHHHHHHHHHHTTSCGGGTCCSCEEEEEESSS
T ss_pred CCCCcEEEEECCCCCCHhHHHHHHHHHHhcccccCCCCCeEEEEECCC
Confidence 45678999999999999988888877643321 45677776553
No 238
>3bh0_A DNAB-like replicative helicase; ATPase, replication; 2.35A {Bacillus phage SPP1}
Probab=88.71 E-value=0.28 Score=49.49 Aligned_cols=47 Identities=15% Similarity=0.082 Sum_probs=34.6
Q ss_pred HHHHHHHhcCCEEEEEcCCCCcHHHHHHHHHHhccccCCCeEEEEeCc
Q 006122 56 TAILYLVETHATTIIVGETGSGKTTQIPQYLKEAGWADGGRVIACTQP 103 (660)
Q Consensus 56 ~~i~~~l~~~~~vii~apTGsGKT~~ip~~l~~~~~~~~~~~i~v~p~ 103 (660)
+.++.-+..+..++|.|++|+|||+++-+++..... .+.++++++-.
T Consensus 59 D~~lgGl~~G~l~li~G~pG~GKTtl~l~ia~~~a~-~g~~vl~~slE 105 (315)
T 3bh0_A 59 DRMTYGYKRRNFVLIAARPSMGKTAFALKQAKNMSD-NDDVVNLHSLE 105 (315)
T ss_dssp HHHHSSBCTTCEEEEECCTTSSHHHHHHHHHHHHHT-TTCEEEEEESS
T ss_pred HhhcCCCCCCcEEEEEeCCCCCHHHHHHHHHHHHHH-cCCeEEEEECC
Confidence 444455677899999999999999888887766543 33567777644
No 239
>1nlf_A Regulatory protein REPA; replicative DNA helicase structural changes, replication; 1.95A {Escherichia coli} SCOP: c.37.1.11 PDB: 1g8y_A 1olo_A
Probab=88.67 E-value=0.28 Score=48.39 Aligned_cols=27 Identities=19% Similarity=0.238 Sum_probs=23.2
Q ss_pred HhcCCEEEEEcCCCCcHHHHHHHHHHh
Q 006122 62 VETHATTIIVGETGSGKTTQIPQYLKE 88 (660)
Q Consensus 62 l~~~~~vii~apTGsGKT~~ip~~l~~ 88 (660)
+..+..++|.||+||||||++-+++..
T Consensus 27 l~~G~i~~i~G~~GsGKTtl~~~l~~~ 53 (279)
T 1nlf_A 27 MVAGTVGALVSPGGAGKSMLALQLAAQ 53 (279)
T ss_dssp EETTSEEEEEESTTSSHHHHHHHHHHH
T ss_pred ccCCCEEEEEcCCCCCHHHHHHHHHHH
Confidence 567899999999999999988777653
No 240
>3im1_A Protein SNU246, PRE-mRNA-splicing helicase BRR2; ATPase, RNA helicase, rnpase, RNA unwindase, molecular model mRNA splicing; 1.65A {Saccharomyces cerevisiae} PDB: 3im2_A* 3hib_A
Probab=88.61 E-value=2 Score=43.43 Aligned_cols=91 Identities=7% Similarity=0.060 Sum_probs=53.5
Q ss_pred CCCCCCCC--cchHHHHHhccCCCChhhhHHHHhhcccC-chhHHHHHHhhcccCc-ccccCcchHHHHHHHHHhhcCC-
Q 006122 468 GVLDDDAK--LTSPTGFQVAEIPLEPMISKMILSSNELG-CSEEIITISAVLSIQS-IWVSGRGAQKELDEAKLRFAAA- 542 (660)
Q Consensus 468 gald~~~~--lT~~lG~~~~~lpl~p~~~~~l~~~~~~~-c~~~~~~i~a~ls~~~-~f~~~~~~~~~~~~~~~~~~~~- 542 (660)
|+++++|. .| ++|+++|.+++++..++.+.....-. ...+++.+.|.....+ +-.+.. +..+..+.......+
T Consensus 1 ~~~~~~~~l~~t-~lG~iaS~yYi~~~T~~~f~~~l~~~~~~~~lL~ils~a~Ef~~i~vR~~-E~~~l~~L~~~~~~~~ 78 (328)
T 3im1_A 1 GAMEATEIISTL-SNGLIASHYGVSFFTIQSFVSSLSNTSTLKNMLYVLSTAVEFESVPLRKG-DRALLVKLSKRLPLRF 78 (328)
T ss_dssp ---CCCCCCTTS-SSCBCCCCCCCCHHHHHHHHHHCCTTCCHHHHHHHHHTCGGGGGSCCCTT-HHHHHHHHHTTSSSCC
T ss_pred CCccCCCCccCC-chhHHHHHHCCCHHHHHHHHHHhcccCCHHHHHHHhccHHHHHhcccCcc-hHHHHHHHHHhCCCcc
Confidence 57777775 47 58999999999999999999776644 4455666666554442 333332 233333332221111
Q ss_pred ------CCcHHHHHHHHHHHHhcC
Q 006122 543 ------EGDHVTFLNIYKGFLQSC 560 (660)
Q Consensus 543 ------~~D~~~~l~~~~~~~~~~ 560 (660)
+..|....-+.++|....
T Consensus 79 ~~~~~~~~~~~K~~lLLqa~isr~ 102 (328)
T 3im1_A 79 PEHTSSGSVSFKVFLLLQAYFSRL 102 (328)
T ss_dssp CTTSCSSSHHHHHHHHHHHHHHTC
T ss_pred cccCCCCCHHHHHHHHHHHHHCCC
Confidence 234666667778887643
No 241
>3m6a_A ATP-dependent protease LA 1; alpha, beta, ATP-binding, hydrolase, nucleotide-binding, Pro serine protease, stress response; HET: ADP; 3.40A {Bacillus subtilis} PDB: 1x37_A
Probab=88.60 E-value=0.55 Score=51.26 Aligned_cols=25 Identities=24% Similarity=0.294 Sum_probs=20.2
Q ss_pred CCEEEEEcCCCCcHHHHHHHHHHhc
Q 006122 65 HATTIIVGETGSGKTTQIPQYLKEA 89 (660)
Q Consensus 65 ~~~vii~apTGsGKT~~ip~~l~~~ 89 (660)
+.++++.||+|+|||+++-.+....
T Consensus 108 g~~vll~Gp~GtGKTtlar~ia~~l 132 (543)
T 3m6a_A 108 GPILCLAGPPGVGKTSLAKSIAKSL 132 (543)
T ss_dssp SCEEEEESSSSSSHHHHHHHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHHHhc
Confidence 6789999999999998876555443
No 242
>2cbz_A Multidrug resistance-associated protein 1; ABC proteins, MRP1/ABCC1, nucleotide-binding domain, ATP- binding, hydrolysis, transport; HET: ATP; 1.5A {Homo sapiens}
Probab=88.60 E-value=0.17 Score=48.84 Aligned_cols=25 Identities=28% Similarity=0.502 Sum_probs=21.3
Q ss_pred hcCCEEEEEcCCCCcHHHHHHHHHH
Q 006122 63 ETHATTIIVGETGSGKTTQIPQYLK 87 (660)
Q Consensus 63 ~~~~~vii~apTGsGKT~~ip~~l~ 87 (660)
..++.+.|.||+||||||++-.+.-
T Consensus 29 ~~Ge~~~i~G~nGsGKSTLl~~l~G 53 (237)
T 2cbz_A 29 PEGALVAVVGQVGCGKSSLLSALLA 53 (237)
T ss_dssp CTTCEEEEECSTTSSHHHHHHHHTT
T ss_pred CCCCEEEEECCCCCCHHHHHHHHhc
Confidence 5688999999999999999876543
No 243
>2ze6_A Isopentenyl transferase; crown GALL tumor, cytokinin biosynthesis; HET: DST AMP; 2.10A {Agrobacterium tumefaciens} PDB: 2ze5_A* 2ze7_A* 2ze8_A
Probab=88.57 E-value=0.27 Score=47.88 Aligned_cols=23 Identities=39% Similarity=0.397 Sum_probs=18.7
Q ss_pred EEEEEcCCCCcHHHHHHHHHHhc
Q 006122 67 TTIIVGETGSGKTTQIPQYLKEA 89 (660)
Q Consensus 67 ~vii~apTGsGKT~~ip~~l~~~ 89 (660)
.++|.|||||||||+.-.+....
T Consensus 3 li~I~G~~GSGKSTla~~La~~~ 25 (253)
T 2ze6_A 3 LHLIYGPTCSGKTDMAIQIAQET 25 (253)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHH
T ss_pred EEEEECCCCcCHHHHHHHHHhcC
Confidence 58899999999999887665443
No 244
>2v9p_A Replication protein E1; AAA+ molecular motor, DNA replication, DNA translocation, nucleotide-binding, DNA-binding; 3.00A {Bovine papillomavirus type 1} PDB: 2gxa_A*
Probab=88.56 E-value=0.25 Score=49.47 Aligned_cols=29 Identities=10% Similarity=0.161 Sum_probs=23.6
Q ss_pred HHhcCCEEEEEcCCCCcHHHHHHHHHHhc
Q 006122 61 LVETHATTIIVGETGSGKTTQIPQYLKEA 89 (660)
Q Consensus 61 ~l~~~~~vii~apTGsGKT~~ip~~l~~~ 89 (660)
.+..++.+.|.||+||||||++-.++...
T Consensus 122 ~i~~Ge~vaIvGpsGsGKSTLl~lL~gl~ 150 (305)
T 2v9p_A 122 GIPKKNCLAFIGPPNTGKSMLCNSLIHFL 150 (305)
T ss_dssp TCTTCSEEEEECSSSSSHHHHHHHHHHHH
T ss_pred EecCCCEEEEECCCCCcHHHHHHHHhhhc
Confidence 34678999999999999999887665443
No 245
>4a74_A DNA repair and recombination protein RADA; hydrolase, recombinase; HET: DNA ANP; 1.48A {Pyrococcus furiosus} PDB: 4a6x_A* 4a6p_A* 4a7o_A*
Probab=88.54 E-value=0.16 Score=48.35 Aligned_cols=43 Identities=33% Similarity=0.275 Sum_probs=29.7
Q ss_pred HHhcCCEEEEEcCCCCcHHHHHHHHHHhcccc-----CCCeEEEEeCc
Q 006122 61 LVETHATTIIVGETGSGKTTQIPQYLKEAGWA-----DGGRVIACTQP 103 (660)
Q Consensus 61 ~l~~~~~vii~apTGsGKT~~ip~~l~~~~~~-----~~~~~i~v~p~ 103 (660)
-+..++.+.|.||+||||||++-.++...... ..+..+++...
T Consensus 21 gi~~G~~~~l~G~nGsGKSTll~~l~g~~~~~~~~g~~~~~~i~~~~~ 68 (231)
T 4a74_A 21 GIETQAITEVFGEFGSGKTQLAHTLAVMVQLPPEEGGLNGSVIWIDTE 68 (231)
T ss_dssp SEESSEEEEEEESTTSSHHHHHHHHHHHTTSCGGGTCCSCEEEEEESS
T ss_pred CCCCCcEEEEECCCCCCHHHHHHHHHHHHhcccccCCCCCEEEEEECC
Confidence 35578899999999999999988776533221 13445666543
No 246
>1kht_A Adenylate kinase; phosphotransferase, signaling protein, transferase; HET: AMP; 2.50A {Methanococcus voltae} SCOP: c.37.1.1 PDB: 3h86_B* 1ki9_A
Probab=88.42 E-value=0.29 Score=44.84 Aligned_cols=25 Identities=20% Similarity=0.355 Sum_probs=20.4
Q ss_pred CCEEEEEcCCCCcHHHHHHHHHHhc
Q 006122 65 HATTIIVGETGSGKTTQIPQYLKEA 89 (660)
Q Consensus 65 ~~~vii~apTGsGKT~~ip~~l~~~ 89 (660)
+..+++.|+.||||||+.-.+....
T Consensus 3 ~~~I~i~G~~GsGKsT~~~~L~~~l 27 (192)
T 1kht_A 3 NKVVVVTGVPGVGSTTSSQLAMDNL 27 (192)
T ss_dssp CCEEEEECCTTSCHHHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHH
Confidence 5679999999999999987665533
No 247
>2c95_A Adenylate kinase 1; transferase, AP4A, nucleotide kinase, transferase ATP-bindi; HET: B4P; 1.71A {Homo sapiens} PDB: 1z83_A* 3adk_A
Probab=88.40 E-value=0.36 Score=44.47 Aligned_cols=28 Identities=29% Similarity=0.464 Sum_probs=22.8
Q ss_pred HhcCCEEEEEcCCCCcHHHHHHHHHHhc
Q 006122 62 VETHATTIIVGETGSGKTTQIPQYLKEA 89 (660)
Q Consensus 62 l~~~~~vii~apTGsGKT~~ip~~l~~~ 89 (660)
+..+..+++.|+.||||||+.-.+....
T Consensus 6 m~~~~~I~l~G~~GsGKsT~~~~La~~l 33 (196)
T 2c95_A 6 LKKTNIIFVVGGPGSGKGTQCEKIVQKY 33 (196)
T ss_dssp HTTSCEEEEEECTTSSHHHHHHHHHHHH
T ss_pred CcCCCEEEEECCCCCCHHHHHHHHHHHh
Confidence 4567789999999999999988765544
No 248
>1zd8_A GTP:AMP phosphotransferase mitochondrial; ATP:AMP phosphotransferase, myokinase, structural genomics, structural genomics consortium, SGC; 1.48A {Homo sapiens} PDB: 2ak3_A*
Probab=88.38 E-value=0.32 Score=46.27 Aligned_cols=27 Identities=26% Similarity=0.338 Sum_probs=20.8
Q ss_pred hcCCEEEEEcCCCCcHHHHHHHHHHhc
Q 006122 63 ETHATTIIVGETGSGKTTQIPQYLKEA 89 (660)
Q Consensus 63 ~~~~~vii~apTGsGKT~~ip~~l~~~ 89 (660)
.....+++.|++||||||+.-.+....
T Consensus 5 ~~~~~I~l~G~~GsGKsT~a~~La~~l 31 (227)
T 1zd8_A 5 ARLLRAVIMGAPGSGKGTVSSRITTHF 31 (227)
T ss_dssp --CCEEEEEECTTSSHHHHHHHHHHHS
T ss_pred ccCcEEEEECCCCCCHHHHHHHHHHHc
Confidence 345679999999999999987766544
No 249
>3gfo_A Cobalt import ATP-binding protein CBIO 1; structural genomics, cell membrane, cobalt transport, hydrolase, ION transport; 2.30A {Clostridium perfringens atcc 13124}
Probab=88.37 E-value=0.19 Score=49.60 Aligned_cols=26 Identities=27% Similarity=0.473 Sum_probs=21.8
Q ss_pred HhcCCEEEEEcCCCCcHHHHHHHHHH
Q 006122 62 VETHATTIIVGETGSGKTTQIPQYLK 87 (660)
Q Consensus 62 l~~~~~vii~apTGsGKT~~ip~~l~ 87 (660)
+..++.+.|.||+||||||++-.+.-
T Consensus 31 i~~Ge~~~iiGpnGsGKSTLl~~l~G 56 (275)
T 3gfo_A 31 IKRGEVTAILGGNGVGKSTLFQNFNG 56 (275)
T ss_dssp EETTSEEEEECCTTSSHHHHHHHHTT
T ss_pred EcCCCEEEEECCCCCCHHHHHHHHHc
Confidence 35789999999999999999876643
No 250
>1qhx_A CPT, protein (chloramphenicol phosphotransferase); kinase, antibiotic resistance, phosphorylation, mononucleoti binding fold; HET: ATP; 2.50A {Streptomyces venezuelae} SCOP: c.37.1.3 PDB: 1grr_A* 1grq_A 1qhs_A* 1qhn_A* 1qhy_A*
Probab=88.32 E-value=0.35 Score=43.81 Aligned_cols=25 Identities=16% Similarity=0.199 Sum_probs=20.3
Q ss_pred CCEEEEEcCCCCcHHHHHHHHHHhc
Q 006122 65 HATTIIVGETGSGKTTQIPQYLKEA 89 (660)
Q Consensus 65 ~~~vii~apTGsGKT~~ip~~l~~~ 89 (660)
+..++++|+.||||||+.-.+....
T Consensus 3 ~~~i~l~G~~GsGKST~a~~La~~l 27 (178)
T 1qhx_A 3 TRMIILNGGSSAGKSGIVRCLQSVL 27 (178)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHHS
T ss_pred ceEEEEECCCCCCHHHHHHHHHHhc
Confidence 4679999999999999887665544
No 251
>1v5w_A DMC1, meiotic recombination protein DMC1/LIM15 homolog; DNA-binding protein, ring protein, octamer, AAA ATPase; 3.20A {Homo sapiens} SCOP: c.37.1.11 PDB: 2zjb_A
Probab=88.27 E-value=0.4 Score=48.96 Aligned_cols=43 Identities=28% Similarity=0.315 Sum_probs=31.7
Q ss_pred HhcCCEEEEEcCCCCcHHHHHHHHHHhcccc-----CCCeEEEEeCch
Q 006122 62 VETHATTIIVGETGSGKTTQIPQYLKEAGWA-----DGGRVIACTQPR 104 (660)
Q Consensus 62 l~~~~~vii~apTGsGKT~~ip~~l~~~~~~-----~~~~~i~v~p~r 104 (660)
+..+..++|.||+|+|||+++-+++...... .+.+++++.-..
T Consensus 119 l~~G~i~~I~G~~GsGKTtla~~la~~~~~~~~~gg~~~~vlyi~~E~ 166 (343)
T 1v5w_A 119 IESMAITEAFGEFRTGKTQLSHTLCVTAQLPGAGGYPGGKIIFIDTEN 166 (343)
T ss_dssp BCSSEEEEEECCTTCTHHHHHHHHHHHTTSCBTTTBCCCEEEEEESSS
T ss_pred CCCCeEEEEECCCCCCHHHHHHHHHHHHhcccccCCCCCeEEEEECCC
Confidence 3457899999999999998888887764331 245677776554
No 252
>2pcj_A ABC transporter, lipoprotein-releasing system ATP-binding protein; structural genomics; 1.70A {Aquifex aeolicus} PDB: 2pcl_A
Probab=88.20 E-value=0.2 Score=47.86 Aligned_cols=24 Identities=29% Similarity=0.355 Sum_probs=20.7
Q ss_pred hcCCEEEEEcCCCCcHHHHHHHHH
Q 006122 63 ETHATTIIVGETGSGKTTQIPQYL 86 (660)
Q Consensus 63 ~~~~~vii~apTGsGKT~~ip~~l 86 (660)
..++.+.|.||.||||||++-.+.
T Consensus 28 ~~Ge~~~iiG~nGsGKSTLl~~l~ 51 (224)
T 2pcj_A 28 KKGEFVSIIGASGSGKSTLLYILG 51 (224)
T ss_dssp ETTCEEEEEECTTSCHHHHHHHHT
T ss_pred cCCCEEEEECCCCCCHHHHHHHHh
Confidence 578899999999999999987654
No 253
>3cm0_A Adenylate kinase; ATP-binding, cytoplasm, nucleotide biosynthesis, nucleotide-binding, transferase, structural genomics; 1.80A {Thermus thermophilus}
Probab=88.18 E-value=0.25 Score=45.24 Aligned_cols=26 Identities=31% Similarity=0.480 Sum_probs=20.8
Q ss_pred cCCEEEEEcCCCCcHHHHHHHHHHhc
Q 006122 64 THATTIIVGETGSGKTTQIPQYLKEA 89 (660)
Q Consensus 64 ~~~~vii~apTGsGKT~~ip~~l~~~ 89 (660)
.+..+++.|+.||||||+.-.+....
T Consensus 3 ~g~~I~l~G~~GsGKST~~~~La~~l 28 (186)
T 3cm0_A 3 VGQAVIFLGPPGAGKGTQASRLAQEL 28 (186)
T ss_dssp CEEEEEEECCTTSCHHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHh
Confidence 45578999999999999988765443
No 254
>3foz_A TRNA delta(2)-isopentenylpyrophosphate transferas; nucleoside modification, isopentenyl-tRNA transferase, transferase-RNA complex; 2.50A {Escherichia coli k-12} PDB: 2zxu_A* 2zm5_A
Probab=88.05 E-value=0.3 Score=48.72 Aligned_cols=23 Identities=30% Similarity=0.352 Sum_probs=18.4
Q ss_pred CEEEEEcCCCCcHHHHHHHHHHh
Q 006122 66 ATTIIVGETGSGKTTQIPQYLKE 88 (660)
Q Consensus 66 ~~vii~apTGsGKT~~ip~~l~~ 88 (660)
..++|+||||||||++.-.+...
T Consensus 11 ~~i~i~GptgsGKt~la~~La~~ 33 (316)
T 3foz_A 11 KAIFLMGPTASGKTALAIELRKI 33 (316)
T ss_dssp EEEEEECCTTSCHHHHHHHHHHH
T ss_pred cEEEEECCCccCHHHHHHHHHHh
Confidence 46889999999999887665544
No 255
>3cf2_A TER ATPase, transitional endoplasmic reticulum ATPase, valosi; AAA, CDC48, ERAD, transport protein; HET: ADP ANP; 3.50A {Mus musculus} PDB: 3cf1_A* 3cf3_A* 1r7r_A*
Probab=88.04 E-value=0.59 Score=53.09 Aligned_cols=25 Identities=24% Similarity=0.339 Sum_probs=19.6
Q ss_pred CCEEEEEcCCCCcHHHHHHHHHHhc
Q 006122 65 HATTIIVGETGSGKTTQIPQYLKEA 89 (660)
Q Consensus 65 ~~~vii~apTGsGKT~~ip~~l~~~ 89 (660)
.+-+++.||+|+|||+++-.+..+.
T Consensus 238 p~GILL~GPPGTGKT~LAraiA~el 262 (806)
T 3cf2_A 238 PRGILLYGPPGTGKTLIARAVANET 262 (806)
T ss_dssp CCEEEEECCTTSCHHHHHHHHHTTT
T ss_pred CCeEEEECCCCCCHHHHHHHHHHHh
Confidence 3579999999999998776655443
No 256
>3kb2_A SPBC2 prophage-derived uncharacterized protein YORR; alpha-beta protein., structural genomics, PSI-2, protein structure initiative; HET: G3D; 2.20A {Bacillus subtilis} SCOP: c.37.1.1 PDB: 2axp_A*
Probab=88.01 E-value=0.33 Score=43.60 Aligned_cols=23 Identities=26% Similarity=0.179 Sum_probs=19.1
Q ss_pred EEEEEcCCCCcHHHHHHHHHHhc
Q 006122 67 TTIIVGETGSGKTTQIPQYLKEA 89 (660)
Q Consensus 67 ~vii~apTGsGKT~~ip~~l~~~ 89 (660)
.++|.|+.||||||+.-.+....
T Consensus 3 ~i~l~G~~GsGKsT~~~~L~~~l 25 (173)
T 3kb2_A 3 LIILEGPDCCFKSTVAAKLSKEL 25 (173)
T ss_dssp EEEEECSSSSSHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHh
Confidence 68999999999999988765543
No 257
>3asz_A Uridine kinase; cytidine phosphorylation, transferase; HET: C5P; 2.25A {Thermus thermophilus} PDB: 3asy_A*
Probab=87.95 E-value=0.26 Score=46.24 Aligned_cols=26 Identities=31% Similarity=0.253 Sum_probs=20.3
Q ss_pred hcCCEEEEEcCCCCcHHHHHHHHHHh
Q 006122 63 ETHATTIIVGETGSGKTTQIPQYLKE 88 (660)
Q Consensus 63 ~~~~~vii~apTGsGKT~~ip~~l~~ 88 (660)
..+..+.|.||+||||||++-.+...
T Consensus 4 ~~~~~i~i~G~~GsGKSTl~~~l~~~ 29 (211)
T 3asz_A 4 PKPFVIGIAGGTASGKTTLAQALART 29 (211)
T ss_dssp -CCEEEEEEESTTSSHHHHHHHHHHH
T ss_pred CCcEEEEEECCCCCCHHHHHHHHHHH
Confidence 35667899999999999988766543
No 258
>1e9r_A Conjugal transfer protein TRWB; coupling protein, bacterial conjugation, F1-ATPase-like quaternary structure, ring helicases; 2.4A {Escherichia coli} SCOP: c.37.1.11 PDB: 1e9s_A 1gki_A* 1gl7_A* 1gl6_A*
Probab=87.92 E-value=0.31 Score=51.63 Aligned_cols=42 Identities=17% Similarity=0.301 Sum_probs=26.9
Q ss_pred cCCEEEEEcCCCCcHHHHHHHHHHhccccCCCeEEEEeCchHH
Q 006122 64 THATTIIVGETGSGKTTQIPQYLKEAGWADGGRVIACTQPRRL 106 (660)
Q Consensus 64 ~~~~vii~apTGsGKT~~ip~~l~~~~~~~~~~~i~v~p~r~l 106 (660)
.+.+++|.|+||||||+.+..++.... ..+..+|++=|-.+.
T Consensus 52 ~~~h~~i~G~tGsGKs~~~~~li~~~~-~~g~~viv~Dpkge~ 93 (437)
T 1e9r_A 52 EPRHLLVNGATGTGKSVLLRELAYTGL-LRGDRMVIVDPNGDM 93 (437)
T ss_dssp GGGCEEEEECTTSSHHHHHHHHHHHHH-HTTCEEEEEEETTHH
T ss_pred CcceEEEECCCCCCHHHHHHHHHHHHH-HCCCcEEEEeCCCch
Confidence 467799999999999977655554432 234455555444333
No 259
>3tqc_A Pantothenate kinase; biosynthesis of cofactors, prosthetic groups, carriers, TRAN; HET: ADP; 2.30A {Coxiella burnetii}
Probab=87.90 E-value=0.87 Score=45.83 Aligned_cols=22 Identities=23% Similarity=0.139 Sum_probs=18.2
Q ss_pred EEEEEcCCCCcHHHHHHHHHHh
Q 006122 67 TTIIVGETGSGKTTQIPQYLKE 88 (660)
Q Consensus 67 ~vii~apTGsGKT~~ip~~l~~ 88 (660)
++.|.||+||||||++-.+...
T Consensus 94 iigI~GpsGSGKSTl~~~L~~l 115 (321)
T 3tqc_A 94 IIGIAGSVAVGKSTTSRVLKAL 115 (321)
T ss_dssp EEEEECCTTSSHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHH
Confidence 7899999999999988665443
No 260
>2bwj_A Adenylate kinase 5; phosphoryl transfer reaction, transferase; HET: AMP; 2.3A {Homo sapiens}
Probab=87.90 E-value=0.45 Score=43.91 Aligned_cols=29 Identities=28% Similarity=0.392 Sum_probs=23.0
Q ss_pred HHhcCCEEEEEcCCCCcHHHHHHHHHHhc
Q 006122 61 LVETHATTIIVGETGSGKTTQIPQYLKEA 89 (660)
Q Consensus 61 ~l~~~~~vii~apTGsGKT~~ip~~l~~~ 89 (660)
.+.....+++.|++||||||+.-.+....
T Consensus 8 ~~~~~~~I~l~G~~GsGKsT~a~~L~~~l 36 (199)
T 2bwj_A 8 DLRKCKIIFIIGGPGSGKGTQCEKLVEKY 36 (199)
T ss_dssp HHHHSCEEEEEECTTSSHHHHHHHHHHHH
T ss_pred ccCCCCEEEEECCCCCCHHHHHHHHHHHh
Confidence 34567789999999999999887665543
No 261
>2bdt_A BH3686; alpha-beta protein, structural genomics, PSI, protein struct initiative, northeast structural genomics consortium, NESG, function; 2.40A {Bacillus halodurans} SCOP: c.37.1.25
Probab=87.84 E-value=0.23 Score=45.64 Aligned_cols=22 Identities=32% Similarity=0.436 Sum_probs=18.6
Q ss_pred CEEEEEcCCCCcHHHHHHHHHH
Q 006122 66 ATTIIVGETGSGKTTQIPQYLK 87 (660)
Q Consensus 66 ~~vii~apTGsGKT~~ip~~l~ 87 (660)
..+++.||+||||||++-.+..
T Consensus 3 ~ii~l~G~~GaGKSTl~~~L~~ 24 (189)
T 2bdt_A 3 KLYIITGPAGVGKSTTCKRLAA 24 (189)
T ss_dssp EEEEEECSTTSSHHHHHHHHHH
T ss_pred eEEEEECCCCCcHHHHHHHHhc
Confidence 4688999999999999887653
No 262
>2qmh_A HPR kinase/phosphorylase; V267F mutation, ATP-binding, carbohydrate metabolism, magnesium, metal-binding, multifunctional enzyme; 2.60A {Lactobacillus casei} PDB: 1jb1_A 1kkl_A 1kkm_A*
Probab=87.83 E-value=0.27 Score=45.65 Aligned_cols=23 Identities=22% Similarity=0.473 Sum_probs=18.5
Q ss_pred CCEEEEEcCCCCcHHHHHHHHHH
Q 006122 65 HATTIIVGETGSGKTTQIPQYLK 87 (660)
Q Consensus 65 ~~~vii~apTGsGKT~~ip~~l~ 87 (660)
+..++|.||||+|||+++-.++.
T Consensus 34 g~~ilI~GpsGsGKStLA~~La~ 56 (205)
T 2qmh_A 34 GLGVLITGDSGVGKSETALELVQ 56 (205)
T ss_dssp TEEEEEECCCTTTTHHHHHHHHT
T ss_pred CEEEEEECCCCCCHHHHHHHHHH
Confidence 56689999999999987765543
No 263
>1sgw_A Putative ABC transporter; structural genomics, P protein structure initiative, southeast collaboratory for S genomics, secsg; 1.70A {Pyrococcus furiosus} SCOP: c.37.1.12
Probab=87.81 E-value=0.2 Score=47.39 Aligned_cols=24 Identities=29% Similarity=0.310 Sum_probs=20.8
Q ss_pred hcCCEEEEEcCCCCcHHHHHHHHH
Q 006122 63 ETHATTIIVGETGSGKTTQIPQYL 86 (660)
Q Consensus 63 ~~~~~vii~apTGsGKT~~ip~~l 86 (660)
..++.+.|.||.||||||++-.+.
T Consensus 33 ~~Ge~~~iiG~NGsGKSTLlk~l~ 56 (214)
T 1sgw_A 33 EKGNVVNFHGPNGIGKTTLLKTIS 56 (214)
T ss_dssp ETTCCEEEECCTTSSHHHHHHHHT
T ss_pred cCCCEEEEECCCCCCHHHHHHHHh
Confidence 568889999999999999987654
No 264
>2q6t_A DNAB replication FORK helicase; hydrolase; 2.90A {Thermus aquaticus}
Probab=87.80 E-value=0.29 Score=52.06 Aligned_cols=64 Identities=16% Similarity=0.184 Sum_probs=41.1
Q ss_pred HHHHHHHhcCCEEEEEcCCCCcHHHHHHHHHHhccccCCCeEEEEeCchHHHHHHHHHHH-HHHhCC
Q 006122 56 TAILYLVETHATTIIVGETGSGKTTQIPQYLKEAGWADGGRVIACTQPRRLAVQAVASRV-AEEMGV 121 (660)
Q Consensus 56 ~~i~~~l~~~~~vii~apTGsGKT~~ip~~l~~~~~~~~~~~i~v~p~r~la~~~~~~~~-~~~~~~ 121 (660)
+.++.-+..++.++|.|++|+|||+++-+++.......+.++++++-. ....++..|+ +...++
T Consensus 191 D~~lgGl~~G~l~ii~G~pg~GKT~lal~ia~~~a~~~g~~vl~~slE--~~~~~l~~R~~~~~~~i 255 (444)
T 2q6t_A 191 DQLIGTLGPGSLNIIAARPAMGKTAFALTIAQNAALKEGVGVGIYSLE--MPAAQLTLRMMCSEARI 255 (444)
T ss_dssp HHHHCCCCTTCEEEEEECTTSCHHHHHHHHHHHHHHTTCCCEEEEESS--SCHHHHHHHHHHHHTTC
T ss_pred hhhcCCcCCCcEEEEEeCCCCCHHHHHHHHHHHHHHhCCCeEEEEECC--CCHHHHHHHHHHHHcCC
Confidence 444444667899999999999999888887776654345567776653 2223444443 334443
No 265
>2ff7_A Alpha-hemolysin translocation ATP-binding protein HLYB; ABC-transporter, transport protein; HET: ADP; 1.60A {Escherichia coli} SCOP: c.37.1.12 PDB: 2ffb_A* 2fgk_A* 2ffa_A* 2fgj_A* 2pmk_A* 3b5j_A* 1mt0_A 1xef_A*
Probab=87.67 E-value=0.22 Score=48.24 Aligned_cols=25 Identities=32% Similarity=0.391 Sum_probs=21.3
Q ss_pred hcCCEEEEEcCCCCcHHHHHHHHHH
Q 006122 63 ETHATTIIVGETGSGKTTQIPQYLK 87 (660)
Q Consensus 63 ~~~~~vii~apTGsGKT~~ip~~l~ 87 (660)
..++.+.|.||+||||||++-.+.-
T Consensus 33 ~~Ge~~~i~G~nGsGKSTLl~~l~G 57 (247)
T 2ff7_A 33 KQGEVIGIVGRSGSGKSTLTKLIQR 57 (247)
T ss_dssp ETTCEEEEECSTTSSHHHHHHHHTT
T ss_pred cCCCEEEEECCCCCCHHHHHHHHhc
Confidence 5788999999999999999876543
No 266
>2pze_A Cystic fibrosis transmembrane conductance regulat; NBD, ABC transporter, CFTR, hydrolase; HET: ATP; 1.70A {Homo sapiens} PDB: 2pzg_A* 2pzf_A* 1ckx_A 1cky_A 1ckw_A 1ckz_A
Probab=87.67 E-value=0.21 Score=47.90 Aligned_cols=25 Identities=28% Similarity=0.417 Sum_probs=21.4
Q ss_pred hcCCEEEEEcCCCCcHHHHHHHHHH
Q 006122 63 ETHATTIIVGETGSGKTTQIPQYLK 87 (660)
Q Consensus 63 ~~~~~vii~apTGsGKT~~ip~~l~ 87 (660)
..++.+.|.||+||||||++-.+.-
T Consensus 32 ~~Ge~~~i~G~nGsGKSTLl~~l~G 56 (229)
T 2pze_A 32 ERGQLLAVAGSTGAGKTSLLMMIMG 56 (229)
T ss_dssp ETTCEEEEECCTTSSHHHHHHHHTT
T ss_pred cCCCEEEEECCCCCCHHHHHHHHhC
Confidence 5788999999999999999876543
No 267
>2zu0_C Probable ATP-dependent transporter SUFC; iron-sulfur cluster, ABC-ATPase, ATP-binding, cytoplasm, nucleotide-binding; HET: MES; 2.20A {Escherichia coli} PDB: 2d3w_A
Probab=87.63 E-value=0.25 Score=48.58 Aligned_cols=26 Identities=31% Similarity=0.396 Sum_probs=21.9
Q ss_pred HhcCCEEEEEcCCCCcHHHHHHHHHH
Q 006122 62 VETHATTIIVGETGSGKTTQIPQYLK 87 (660)
Q Consensus 62 l~~~~~vii~apTGsGKT~~ip~~l~ 87 (660)
+..++.+.|.||+||||||++-.+.-
T Consensus 43 i~~Ge~~~l~G~NGsGKSTLlk~l~G 68 (267)
T 2zu0_C 43 VHPGEVHAIMGPNGSGKSTLSATLAG 68 (267)
T ss_dssp ECTTCEEEEECCTTSSHHHHHHHHHT
T ss_pred EcCCCEEEEECCCCCCHHHHHHHHhC
Confidence 35789999999999999999876654
No 268
>1knq_A Gluconate kinase; ALFA/beta structure, transferase; 2.00A {Escherichia coli} SCOP: c.37.1.17 PDB: 1ko1_A 1ko4_A 1ko5_A* 1ko8_A* 1kof_A*
Probab=87.58 E-value=0.29 Score=44.29 Aligned_cols=24 Identities=25% Similarity=0.513 Sum_probs=19.7
Q ss_pred CCEEEEEcCCCCcHHHHHHHHHHh
Q 006122 65 HATTIIVGETGSGKTTQIPQYLKE 88 (660)
Q Consensus 65 ~~~vii~apTGsGKT~~ip~~l~~ 88 (660)
+..+++.|+.||||||++-.+...
T Consensus 8 g~~i~l~G~~GsGKSTl~~~l~~~ 31 (175)
T 1knq_A 8 HHIYVLMGVSGSGKSAVASEVAHQ 31 (175)
T ss_dssp SEEEEEECSTTSCHHHHHHHHHHH
T ss_pred CcEEEEEcCCCCCHHHHHHHHHHh
Confidence 568999999999999988765543
No 269
>1ye8_A Protein THEP1, hypothetical UPF0334 kinase-like protein AQ_1292; mixed alpha-beta protein, rossman fold, signaling protein, transferase; 1.40A {Aquifex aeolicus} SCOP: c.37.1.11
Probab=87.53 E-value=0.33 Score=44.39 Aligned_cols=22 Identities=41% Similarity=0.656 Sum_probs=18.0
Q ss_pred EEEEEcCCCCcHHHHHHHHHHh
Q 006122 67 TTIIVGETGSGKTTQIPQYLKE 88 (660)
Q Consensus 67 ~vii~apTGsGKT~~ip~~l~~ 88 (660)
.+.+.||+||||||++-.+.-.
T Consensus 2 ~i~l~G~nGsGKTTLl~~l~g~ 23 (178)
T 1ye8_A 2 KIIITGEPGVGKTTLVKKIVER 23 (178)
T ss_dssp EEEEECCTTSSHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHH
Confidence 4789999999999988766543
No 270
>3uie_A Adenylyl-sulfate kinase 1, chloroplastic; rossmann fold, transferase-transferase complex; HET: ADX ANP; 1.79A {Arabidopsis thaliana} SCOP: c.37.1.0 PDB: 4fxp_A*
Probab=87.48 E-value=0.29 Score=45.63 Aligned_cols=27 Identities=22% Similarity=0.238 Sum_probs=21.7
Q ss_pred hcCCEEEEEcCCCCcHHHHHHHHHHhc
Q 006122 63 ETHATTIIVGETGSGKTTQIPQYLKEA 89 (660)
Q Consensus 63 ~~~~~vii~apTGsGKT~~ip~~l~~~ 89 (660)
..+..++|.||.||||||++-.+....
T Consensus 23 ~~g~~i~l~G~sGsGKSTl~~~La~~l 49 (200)
T 3uie_A 23 QKGCVIWVTGLSGSGKSTLACALNQML 49 (200)
T ss_dssp SCCEEEEEECSTTSSHHHHHHHHHHHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHH
Confidence 457889999999999998887665443
No 271
>2d2e_A SUFC protein; ABC-ATPase, SUF protein, 310-helix, riken structural genomics/proteomics initiative, RSGI, structural genomics, binding; 1.70A {Thermus thermophilus} PDB: 2d2f_A*
Probab=87.38 E-value=0.25 Score=47.98 Aligned_cols=26 Identities=23% Similarity=0.285 Sum_probs=21.9
Q ss_pred HhcCCEEEEEcCCCCcHHHHHHHHHH
Q 006122 62 VETHATTIIVGETGSGKTTQIPQYLK 87 (660)
Q Consensus 62 l~~~~~vii~apTGsGKT~~ip~~l~ 87 (660)
+..++.+.|.||+||||||++-.+.-
T Consensus 26 i~~Ge~~~l~G~nGsGKSTLlk~l~G 51 (250)
T 2d2e_A 26 VPKGEVHALMGPNGAGKSTLGKILAG 51 (250)
T ss_dssp EETTCEEEEECSTTSSHHHHHHHHHT
T ss_pred EcCCCEEEEECCCCCCHHHHHHHHhC
Confidence 35788999999999999999876654
No 272
>4g1u_C Hemin import ATP-binding protein HMUV; membrane transporter, type II ABC importer, HMUT, plasma MEM transport protein-hydrolase complex; 3.01A {Yersinia pestis}
Probab=87.34 E-value=0.24 Score=48.57 Aligned_cols=25 Identities=24% Similarity=0.404 Sum_probs=21.4
Q ss_pred hcCCEEEEEcCCCCcHHHHHHHHHH
Q 006122 63 ETHATTIIVGETGSGKTTQIPQYLK 87 (660)
Q Consensus 63 ~~~~~vii~apTGsGKT~~ip~~l~ 87 (660)
..++.+.|.||+||||||++-.+.-
T Consensus 35 ~~Ge~~~liG~nGsGKSTLl~~l~G 59 (266)
T 4g1u_C 35 ASGEMVAIIGPNGAGKSTLLRLLTG 59 (266)
T ss_dssp ETTCEEEEECCTTSCHHHHHHHHTS
T ss_pred cCCCEEEEECCCCCcHHHHHHHHhc
Confidence 5789999999999999999876543
No 273
>1ly1_A Polynucleotide kinase; PNK, phosphatase, transferase; 2.00A {Enterobacteria phage T4} SCOP: c.37.1.1
Probab=87.30 E-value=0.34 Score=43.86 Aligned_cols=22 Identities=27% Similarity=0.528 Sum_probs=18.4
Q ss_pred CEEEEEcCCCCcHHHHHHHHHH
Q 006122 66 ATTIIVGETGSGKTTQIPQYLK 87 (660)
Q Consensus 66 ~~vii~apTGsGKT~~ip~~l~ 87 (660)
..+++.|++||||||+.-.+..
T Consensus 3 ~~I~i~G~~GsGKST~a~~L~~ 24 (181)
T 1ly1_A 3 KIILTIGCPGSGKSTWAREFIA 24 (181)
T ss_dssp EEEEEECCTTSSHHHHHHHHHH
T ss_pred eEEEEecCCCCCHHHHHHHHHh
Confidence 3689999999999998876654
No 274
>4a1f_A DNAB helicase, replicative DNA helicase; hydrolase, DNA replication, ATPase; HET: FLC; 2.50A {Helicobacter pylori}
Probab=87.30 E-value=0.35 Score=49.17 Aligned_cols=57 Identities=18% Similarity=0.114 Sum_probs=38.8
Q ss_pred HHHHHHHhcCCEEEEEcCCCCcHHHHHHHHHHhccccCCCeEEEEeCchHHHHHHHHHHH
Q 006122 56 TAILYLVETHATTIIVGETGSGKTTQIPQYLKEAGWADGGRVIACTQPRRLAVQAVASRV 115 (660)
Q Consensus 56 ~~i~~~l~~~~~vii~apTGsGKT~~ip~~l~~~~~~~~~~~i~v~p~r~la~~~~~~~~ 115 (660)
+.++.-+..++.++|.|++|+|||+++-+++..... .+.++++++-. ....++..|+
T Consensus 37 D~~~gGl~~G~LiiIaG~pG~GKTt~al~ia~~~a~-~g~~Vl~fSlE--ms~~ql~~Rl 93 (338)
T 4a1f_A 37 DNYTSGFNKGSLVIIGARPSMGKTSLMMNMVLSALN-DDRGVAVFSLE--MSAEQLALRA 93 (338)
T ss_dssp HHHHCSBCTTCEEEEEECTTSCHHHHHHHHHHHHHH-TTCEEEEEESS--SCHHHHHHHH
T ss_pred HHHhcCCCCCcEEEEEeCCCCCHHHHHHHHHHHHHH-cCCeEEEEeCC--CCHHHHHHHH
Confidence 444445677899999999999999888877776544 45566666543 3334444443
No 275
>2ghi_A Transport protein; multidrug resistance protein, MDR, structural genomics, structural genomics consortium, SGC; 2.20A {Plasmodium yoelii yoelii str}
Probab=87.25 E-value=0.25 Score=48.32 Aligned_cols=25 Identities=36% Similarity=0.501 Sum_probs=21.5
Q ss_pred hcCCEEEEEcCCCCcHHHHHHHHHH
Q 006122 63 ETHATTIIVGETGSGKTTQIPQYLK 87 (660)
Q Consensus 63 ~~~~~vii~apTGsGKT~~ip~~l~ 87 (660)
..++.+.|.||+||||||++-.+.-
T Consensus 44 ~~Ge~~~i~G~nGsGKSTLl~~l~G 68 (260)
T 2ghi_A 44 PSGTTCALVGHTGSGKSTIAKLLYR 68 (260)
T ss_dssp CTTCEEEEECSTTSSHHHHHHHHTT
T ss_pred CCCCEEEEECCCCCCHHHHHHHHhc
Confidence 5789999999999999999876643
No 276
>3sr0_A Adenylate kinase; phosphoryl transfer analogue, ALF4, transferase (phosphotran phosphoryl transfer, nucleotide-binding; HET: ADP AMP; 1.56A {Aquifex aeolicus} PDB: 2rh5_A 2rgx_A*
Probab=87.24 E-value=0.37 Score=45.21 Aligned_cols=24 Identities=38% Similarity=0.607 Sum_probs=20.1
Q ss_pred EEEEEcCCCCcHHHHHHHHHHhcc
Q 006122 67 TTIIVGETGSGKTTQIPQYLKEAG 90 (660)
Q Consensus 67 ~vii~apTGsGKT~~ip~~l~~~~ 90 (660)
++++.||+||||+|+...+....+
T Consensus 2 ~Iil~GpPGsGKgTqa~~La~~~g 25 (206)
T 3sr0_A 2 ILVFLGPPGAGKGTQAKRLAKEKG 25 (206)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHHC
T ss_pred EEEEECCCCCCHHHHHHHHHHHHC
Confidence 478899999999999988776653
No 277
>1b0u_A Histidine permease; ABC transporter, transport protein; HET: ATP; 1.50A {Salmonella typhimurium} SCOP: c.37.1.12
Probab=87.21 E-value=0.26 Score=48.31 Aligned_cols=24 Identities=29% Similarity=0.392 Sum_probs=20.9
Q ss_pred hcCCEEEEEcCCCCcHHHHHHHHH
Q 006122 63 ETHATTIIVGETGSGKTTQIPQYL 86 (660)
Q Consensus 63 ~~~~~vii~apTGsGKT~~ip~~l 86 (660)
..++.+.|.||+||||||++-.+.
T Consensus 30 ~~Ge~~~liG~nGsGKSTLlk~l~ 53 (262)
T 1b0u_A 30 RAGDVISIIGSSGSGKSTFLRCIN 53 (262)
T ss_dssp CTTCEEEEECCTTSSHHHHHHHHT
T ss_pred cCCCEEEEECCCCCCHHHHHHHHh
Confidence 578899999999999999987654
No 278
>4ag6_A VIRB4 ATPase, type IV secretory pathway VIRB4 components-like P; hydrolase, type IV secretion, conjugation; 2.35A {Thermoanaerobacter pseudethanolicus} PDB: 4ag5_A
Probab=87.21 E-value=0.47 Score=49.43 Aligned_cols=40 Identities=28% Similarity=0.426 Sum_probs=28.5
Q ss_pred cCCEEEEEcCCCCcHHHHHHHHHHhccccCCCeEEEEeCch
Q 006122 64 THATTIIVGETGSGKTTQIPQYLKEAGWADGGRVIACTQPR 104 (660)
Q Consensus 64 ~~~~vii~apTGsGKT~~ip~~l~~~~~~~~~~~i~v~p~r 104 (660)
.+.+++|.|+||||||+++-.++... ...+.+++++=|..
T Consensus 34 ~~~~~~i~G~~G~GKs~~~~~~~~~~-~~~~~~~~~~D~~~ 73 (392)
T 4ag6_A 34 TNSNWTILAKPGAGKSFTAKMLLLRE-YMQGSRVIIIDPER 73 (392)
T ss_dssp CCCCEEEECCTTSSHHHHHHHHHHHH-HTTTCCEEEEESSC
T ss_pred ccCceEEEcCCCCCHHHHHHHHHHHH-HHCCCEEEEEeCCc
Confidence 57789999999999998887666544 23455566655543
No 279
>3iij_A Coilin-interacting nuclear ATPase protein; alpha and beta proteins (A/B), protein binding, transferase, phosphotransferase; HET: ADP; 1.76A {Homo sapiens} SCOP: c.37.1.1 PDB: 3iik_A 3iil_A* 3iim_A* 1rkb_A
Probab=87.19 E-value=0.38 Score=43.76 Aligned_cols=26 Identities=23% Similarity=0.332 Sum_probs=21.0
Q ss_pred cCCEEEEEcCCCCcHHHHHHHHHHhc
Q 006122 64 THATTIIVGETGSGKTTQIPQYLKEA 89 (660)
Q Consensus 64 ~~~~vii~apTGsGKT~~ip~~l~~~ 89 (660)
...++++.|++||||||+.-.+....
T Consensus 10 ~~~~i~i~G~~GsGKst~~~~l~~~~ 35 (180)
T 3iij_A 10 LLPNILLTGTPGVGKTTLGKELASKS 35 (180)
T ss_dssp CCCCEEEECSTTSSHHHHHHHHHHHH
T ss_pred cCCeEEEEeCCCCCHHHHHHHHHHHh
Confidence 45679999999999999887665443
No 280
>1g6h_A High-affinity branched-chain amino acid transport ATP-binding protein; beta-core domain; HET: ADP; 1.60A {Methanocaldococcus jannaschii} SCOP: c.37.1.12 PDB: 1gaj_A 1g9x_A*
Probab=87.18 E-value=0.25 Score=48.25 Aligned_cols=25 Identities=40% Similarity=0.565 Sum_probs=21.3
Q ss_pred HhcCCEEEEEcCCCCcHHHHHHHHH
Q 006122 62 VETHATTIIVGETGSGKTTQIPQYL 86 (660)
Q Consensus 62 l~~~~~vii~apTGsGKT~~ip~~l 86 (660)
+..++.+.|.||+||||||++-.+.
T Consensus 30 i~~Ge~~~liG~nGsGKSTLlk~l~ 54 (257)
T 1g6h_A 30 VNKGDVTLIIGPNGSGKSTLINVIT 54 (257)
T ss_dssp EETTCEEEEECSTTSSHHHHHHHHT
T ss_pred EeCCCEEEEECCCCCCHHHHHHHHh
Confidence 3578899999999999999987654
No 281
>1ji0_A ABC transporter; ATP binding protein, structural genomics, PSI, protein structure initiative, midwest center for structural genomics, MCSG; HET: ATP; 2.00A {Thermotoga maritima} SCOP: c.37.1.12
Probab=87.13 E-value=0.25 Score=47.64 Aligned_cols=24 Identities=25% Similarity=0.461 Sum_probs=20.8
Q ss_pred hcCCEEEEEcCCCCcHHHHHHHHH
Q 006122 63 ETHATTIIVGETGSGKTTQIPQYL 86 (660)
Q Consensus 63 ~~~~~vii~apTGsGKT~~ip~~l 86 (660)
..+..+.|.||+||||||++-.+.
T Consensus 30 ~~Ge~~~l~G~nGsGKSTLl~~l~ 53 (240)
T 1ji0_A 30 PRGQIVTLIGANGAGKTTTLSAIA 53 (240)
T ss_dssp ETTCEEEEECSTTSSHHHHHHHHT
T ss_pred cCCCEEEEECCCCCCHHHHHHHHh
Confidence 578899999999999999987654
No 282
>3nh6_A ATP-binding cassette SUB-family B member 6, mitoc; ABC-transporter, ABCB6, nucleotide binding domain, heme BIOS transport protein; 2.00A {Homo sapiens} PDB: 3nh9_A* 3nha_A* 3nhb_A*
Probab=87.13 E-value=0.18 Score=50.52 Aligned_cols=25 Identities=28% Similarity=0.472 Sum_probs=21.4
Q ss_pred hcCCEEEEEcCCCCcHHHHHHHHHH
Q 006122 63 ETHATTIIVGETGSGKTTQIPQYLK 87 (660)
Q Consensus 63 ~~~~~vii~apTGsGKT~~ip~~l~ 87 (660)
..++.+.|+||+||||||++-.+..
T Consensus 78 ~~Ge~vaivG~sGsGKSTLl~ll~g 102 (306)
T 3nh6_A 78 MPGQTLALVGPSGAGKSTILRLLFR 102 (306)
T ss_dssp CTTCEEEEESSSCHHHHHHHHHHTT
T ss_pred cCCCEEEEECCCCchHHHHHHHHHc
Confidence 5789999999999999999876543
No 283
>1mv5_A LMRA, multidrug resistance ABC transporter ATP-binding and permease protein; asymmetric dimer, tetramer, P-glycoprotein; HET: ATP ADP; 3.10A {Lactococcus lactis} SCOP: c.37.1.12
Probab=87.09 E-value=0.22 Score=48.11 Aligned_cols=25 Identities=20% Similarity=0.393 Sum_probs=21.2
Q ss_pred hcCCEEEEEcCCCCcHHHHHHHHHH
Q 006122 63 ETHATTIIVGETGSGKTTQIPQYLK 87 (660)
Q Consensus 63 ~~~~~vii~apTGsGKT~~ip~~l~ 87 (660)
..++.+.|.||+||||||++-.+.-
T Consensus 26 ~~Ge~~~i~G~nGsGKSTLl~~l~G 50 (243)
T 1mv5_A 26 QPNSIIAFAGPSGGGKSTIFSLLER 50 (243)
T ss_dssp CTTEEEEEECCTTSSHHHHHHHHTT
T ss_pred cCCCEEEEECCCCCCHHHHHHHHhc
Confidence 5688999999999999999876543
No 284
>1ofh_A ATP-dependent HSL protease ATP-binding subunit HSLU; chaperone, hydrolase, ATP-binding; HET: ADP; 2.5A {Haemophilus influenzae} SCOP: c.37.1.20 PDB: 1ofi_A*
Probab=87.04 E-value=0.64 Score=46.29 Aligned_cols=25 Identities=32% Similarity=0.437 Sum_probs=19.9
Q ss_pred CCEEEEEcCCCCcHHHHHHHHHHhc
Q 006122 65 HATTIIVGETGSGKTTQIPQYLKEA 89 (660)
Q Consensus 65 ~~~vii~apTGsGKT~~ip~~l~~~ 89 (660)
...+++.||+|+|||+++-.+....
T Consensus 50 ~~~vll~G~~GtGKT~la~~la~~l 74 (310)
T 1ofh_A 50 PKNILMIGPTGVGKTEIARRLAKLA 74 (310)
T ss_dssp CCCEEEECCTTSSHHHHHHHHHHHH
T ss_pred CceEEEECCCCCCHHHHHHHHHHHh
Confidence 5679999999999998776655443
No 285
>1qvr_A CLPB protein; coiled coil, AAA ATPase, chaperone; HET: ANP; 3.00A {Thermus thermophilus} SCOP: a.174.1.1 c.37.1.20 c.37.1.20
Probab=87.01 E-value=0.71 Score=53.46 Aligned_cols=23 Identities=26% Similarity=0.394 Sum_probs=17.8
Q ss_pred CEEEEEcCCCCcHHHHHHHHHHh
Q 006122 66 ATTIIVGETGSGKTTQIPQYLKE 88 (660)
Q Consensus 66 ~~vii~apTGsGKT~~ip~~l~~ 88 (660)
..+++.||||+|||+++-.+...
T Consensus 589 ~~vLl~Gp~GtGKT~lA~~la~~ 611 (854)
T 1qvr_A 589 GSFLFLGPTGVGKTELAKTLAAT 611 (854)
T ss_dssp EEEEEBSCSSSSHHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHH
Confidence 37999999999999776544433
No 286
>1vpl_A ABC transporter, ATP-binding protein; TM0544, structural GENO joint center for structural genomics, JCSG, protein structu initiative, PSI; 2.10A {Thermotoga maritima} SCOP: c.37.1.12
Probab=86.99 E-value=0.27 Score=47.95 Aligned_cols=24 Identities=29% Similarity=0.376 Sum_probs=20.9
Q ss_pred hcCCEEEEEcCCCCcHHHHHHHHH
Q 006122 63 ETHATTIIVGETGSGKTTQIPQYL 86 (660)
Q Consensus 63 ~~~~~vii~apTGsGKT~~ip~~l 86 (660)
..++.+.|.||+||||||++-.+.
T Consensus 39 ~~Gei~~l~G~NGsGKSTLlk~l~ 62 (256)
T 1vpl_A 39 EEGEIFGLIGPNGAGKTTTLRIIS 62 (256)
T ss_dssp CTTCEEEEECCTTSSHHHHHHHHT
T ss_pred cCCcEEEEECCCCCCHHHHHHHHh
Confidence 578899999999999999987654
No 287
>2olj_A Amino acid ABC transporter; ABC domain, ATPase, hydrolase; HET: ADP; 2.05A {Geobacillus stearothermophilus} PDB: 2olk_A* 2ouk_A 2q0h_A* 3c4j_A* 3c41_J*
Probab=86.95 E-value=0.27 Score=48.14 Aligned_cols=24 Identities=25% Similarity=0.450 Sum_probs=20.9
Q ss_pred hcCCEEEEEcCCCCcHHHHHHHHH
Q 006122 63 ETHATTIIVGETGSGKTTQIPQYL 86 (660)
Q Consensus 63 ~~~~~vii~apTGsGKT~~ip~~l 86 (660)
..++.+.|.||.||||||++-.+.
T Consensus 48 ~~Gei~~liG~NGsGKSTLlk~l~ 71 (263)
T 2olj_A 48 REGEVVVVIGPSGSGKSTFLRCLN 71 (263)
T ss_dssp CTTCEEEEECCTTSSHHHHHHHHT
T ss_pred cCCCEEEEEcCCCCcHHHHHHHHH
Confidence 578899999999999999987654
No 288
>2v54_A DTMP kinase, thymidylate kinase; nucleotide biosynthesis, ATP-binding, nucleotide-binding, poxvirus, transferase; HET: TYD POP; 2.4A {Vaccinia virus copenhagen} PDB: 2w0s_A*
Probab=86.93 E-value=0.31 Score=45.28 Aligned_cols=25 Identities=32% Similarity=0.324 Sum_probs=20.8
Q ss_pred cCCEEEEEcCCCCcHHHHHHHHHHh
Q 006122 64 THATTIIVGETGSGKTTQIPQYLKE 88 (660)
Q Consensus 64 ~~~~vii~apTGsGKT~~ip~~l~~ 88 (660)
.+..+++.|+.||||||+...+...
T Consensus 3 ~~~~I~l~G~~GsGKsT~~~~L~~~ 27 (204)
T 2v54_A 3 RGALIVFEGLDKSGKTTQCMNIMES 27 (204)
T ss_dssp CCCEEEEECCTTSSHHHHHHHHHHT
T ss_pred CCcEEEEEcCCCCCHHHHHHHHHHH
Confidence 4678999999999999998866544
No 289
>1gvn_B Zeta; postsegregational killing system, plasmid; 1.95A {Streptococcus pyogenes} SCOP: c.37.1.21 PDB: 3q8x_B*
Probab=86.83 E-value=0.58 Score=46.41 Aligned_cols=25 Identities=28% Similarity=0.456 Sum_probs=20.3
Q ss_pred CCEEEEEcCCCCcHHHHHHHHHHhc
Q 006122 65 HATTIIVGETGSGKTTQIPQYLKEA 89 (660)
Q Consensus 65 ~~~vii~apTGsGKT~~ip~~l~~~ 89 (660)
+..++++||+||||||++-.+....
T Consensus 33 ~~livl~G~sGsGKSTla~~L~~~~ 57 (287)
T 1gvn_B 33 PTAFLLGGQPGSGKTSLRSAIFEET 57 (287)
T ss_dssp CEEEEEECCTTSCTHHHHHHHHHHT
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHh
Confidence 3578999999999999988776543
No 290
>1g5t_A COB(I)alamin adenosyltransferase; P-loop protein, cobalamin biosynthesis, RECA fold; HET: ATP; 1.80A {Salmonella typhimurium} SCOP: c.37.1.11 PDB: 1g5r_A* 1g64_A*
Probab=86.83 E-value=7.2 Score=35.90 Aligned_cols=36 Identities=25% Similarity=0.215 Sum_probs=24.9
Q ss_pred cCCEEEEEcCCCCcHHHHHHHHHHhccccCCCeEEEE
Q 006122 64 THATTIIVGETGSGKTTQIPQYLKEAGWADGGRVIAC 100 (660)
Q Consensus 64 ~~~~vii~apTGsGKT~~ip~~l~~~~~~~~~~~i~v 100 (660)
....++|..++|.||||.+--+...+. ..+.+++++
T Consensus 27 ~~g~i~v~tG~GkGKTTaA~GlalRA~-g~G~rV~~v 62 (196)
T 1g5t_A 27 ERGIIIVFTGNGKGKTTAAFGTAARAV-GHGKNVGVV 62 (196)
T ss_dssp CCCCEEEEESSSSCHHHHHHHHHHHHH-HTTCCEEEE
T ss_pred cCceEEEECCCCCCHHHHHHHHHHHHH-HCCCeEEEE
Confidence 345688889999999988766655543 345555555
No 291
>2i3b_A HCR-ntpase, human cancer-related ntpase; AAA, rossmann, hydrolase; NMR {Homo sapiens} SCOP: c.37.1.11
Probab=86.73 E-value=0.38 Score=44.45 Aligned_cols=25 Identities=28% Similarity=0.339 Sum_probs=20.0
Q ss_pred CCEEEEEcCCCCcHHHHHHHHHHhc
Q 006122 65 HATTIIVGETGSGKTTQIPQYLKEA 89 (660)
Q Consensus 65 ~~~vii~apTGsGKT~~ip~~l~~~ 89 (660)
++.+.+.||+|+||||++-.+....
T Consensus 1 G~~i~i~G~nG~GKTTll~~l~g~~ 25 (189)
T 2i3b_A 1 ARHVFLTGPPGVGKTTLIHKASEVL 25 (189)
T ss_dssp CCCEEEESCCSSCHHHHHHHHHHHH
T ss_pred CCEEEEECCCCChHHHHHHHHHhhc
Confidence 4568899999999999887665543
No 292
>3bgw_A DNAB-like replicative helicase; ATPase, replication; 3.91A {Bacillus phage SPP1}
Probab=86.68 E-value=0.34 Score=51.43 Aligned_cols=47 Identities=15% Similarity=0.064 Sum_probs=34.9
Q ss_pred HHHHHHHhcCCEEEEEcCCCCcHHHHHHHHHHhccccCCCeEEEEeCc
Q 006122 56 TAILYLVETHATTIIVGETGSGKTTQIPQYLKEAGWADGGRVIACTQP 103 (660)
Q Consensus 56 ~~i~~~l~~~~~vii~apTGsGKT~~ip~~l~~~~~~~~~~~i~v~p~ 103 (660)
+.++.-+..++.++|.|++|+|||+++-+++...... +.++++++-.
T Consensus 188 D~~lgGl~~G~liiIaG~pG~GKTtlal~ia~~~a~~-g~~vl~fSlE 234 (444)
T 3bgw_A 188 DRMTYGYKRRNFVLIAARPSMGKTAFALKQAKNMSDN-DDVVNLHSLE 234 (444)
T ss_dssp HHHHSSBCSSCEEEEEECSSSSHHHHHHHHHHHHHHT-TCEEEEECSS
T ss_pred HhhcCCCCCCcEEEEEeCCCCChHHHHHHHHHHHHHc-CCEEEEEECC
Confidence 4444456678999999999999998888887776543 5567777543
No 293
>3aez_A Pantothenate kinase; transferase, homodimer, COA biosynthesis, nucleotide binding binding, cytoplasm, nucleotide-binding; HET: GDP PAZ; 2.20A {Mycobacterium tuberculosis} PDB: 2ges_A* 2geu_A* 2gev_A* 2zs7_A* 2zs8_A* 2zs9_A* 2zsa_A* 2zsb_A* 2zsd_A* 2zse_A* 2zsf_A* 2get_A* 3af0_A* 3af1_A* 3af2_A* 3af3_A* 3af4_A* 3avp_A* 3avo_A* 3avq_A*
Probab=86.64 E-value=0.46 Score=47.76 Aligned_cols=26 Identities=15% Similarity=0.086 Sum_probs=20.9
Q ss_pred HhcCCEEEEEcCCCCcHHHHHHHHHH
Q 006122 62 VETHATTIIVGETGSGKTTQIPQYLK 87 (660)
Q Consensus 62 l~~~~~vii~apTGsGKT~~ip~~l~ 87 (660)
+..+..+.|.||+||||||++-.+..
T Consensus 87 ~~~g~ivgI~G~sGsGKSTL~~~L~g 112 (312)
T 3aez_A 87 RPVPFIIGVAGSVAVGKSTTARVLQA 112 (312)
T ss_dssp SCCCEEEEEECCTTSCHHHHHHHHHH
T ss_pred CCCCEEEEEECCCCchHHHHHHHHHh
Confidence 34567899999999999998875544
No 294
>3tlx_A Adenylate kinase 2; structural genomics, structural genomics consortium, SGC, RO fold, transferase, ATP binding, phosphorylation; HET: ADP ATP AMP; 2.75A {Plasmodium falciparum}
Probab=86.58 E-value=0.46 Score=45.87 Aligned_cols=26 Identities=35% Similarity=0.414 Sum_probs=21.0
Q ss_pred cCCEEEEEcCCCCcHHHHHHHHHHhc
Q 006122 64 THATTIIVGETGSGKTTQIPQYLKEA 89 (660)
Q Consensus 64 ~~~~vii~apTGsGKT~~ip~~l~~~ 89 (660)
....+++.||.||||||+.-.+....
T Consensus 28 ~~~~I~l~G~~GsGKsT~a~~L~~~~ 53 (243)
T 3tlx_A 28 PDGRYIFLGAPGSGKGTQSLNLKKSH 53 (243)
T ss_dssp CCEEEEEECCTTSSHHHHHHHHHHHH
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHh
Confidence 44579999999999999988776544
No 295
>2ixe_A Antigen peptide transporter 1; ABC ATPase, hydrolase; HET: ATP; 2.0A {Rattus norvegicus} PDB: 2ixg_A* 2ixf_A* 1jj7_A*
Probab=86.58 E-value=0.29 Score=48.23 Aligned_cols=26 Identities=31% Similarity=0.387 Sum_probs=21.8
Q ss_pred HhcCCEEEEEcCCCCcHHHHHHHHHH
Q 006122 62 VETHATTIIVGETGSGKTTQIPQYLK 87 (660)
Q Consensus 62 l~~~~~vii~apTGsGKT~~ip~~l~ 87 (660)
+..++.+.|.||+||||||++-.+.-
T Consensus 42 i~~Ge~~~i~G~nGsGKSTLlk~l~G 67 (271)
T 2ixe_A 42 LYPGKVTALVGPNGSGKSTVAALLQN 67 (271)
T ss_dssp ECTTCEEEEECSTTSSHHHHHHHHTT
T ss_pred ECCCCEEEEECCCCCCHHHHHHHHhc
Confidence 35789999999999999999876543
No 296
>1xjc_A MOBB protein homolog; structural genomics, midwest center for structural GEN PSI, protein structure initiative, MCSG; 2.10A {Geobacillus stearothermophilus} SCOP: c.37.1.10
Probab=86.57 E-value=0.63 Score=42.08 Aligned_cols=24 Identities=33% Similarity=0.421 Sum_probs=20.1
Q ss_pred CEEEEEcCCCCcHHHHHHHHHHhc
Q 006122 66 ATTIIVGETGSGKTTQIPQYLKEA 89 (660)
Q Consensus 66 ~~vii~apTGsGKT~~ip~~l~~~ 89 (660)
..+.+.|+.||||||++..++...
T Consensus 5 ~~i~i~G~sGsGKTTl~~~L~~~l 28 (169)
T 1xjc_A 5 NVWQVVGYKHSGKTTLMEKWVAAA 28 (169)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHHH
T ss_pred EEEEEECCCCCCHHHHHHHHHHhh
Confidence 568999999999999988776554
No 297
>2r44_A Uncharacterized protein; putative ATPase, structural genomics, joint center for struc genomics, JCSG; HET: MSE PG4; 2.00A {Cytophaga hutchinsonii atcc 33406}
Probab=86.54 E-value=0.59 Score=47.28 Aligned_cols=37 Identities=19% Similarity=0.175 Sum_probs=27.5
Q ss_pred HHHHHHHHHHhcCCEEEEEcCCCCcHHHHHHHHHHhc
Q 006122 53 KYRTAILYLVETHATTIIVGETGSGKTTQIPQYLKEA 89 (660)
Q Consensus 53 ~~~~~i~~~l~~~~~vii~apTGsGKT~~ip~~l~~~ 89 (660)
...+.+..++..+..+++.||+|+|||+++-.+....
T Consensus 34 ~~~~~l~~~l~~~~~vll~G~pGtGKT~la~~la~~~ 70 (331)
T 2r44_A 34 YMINRLLIGICTGGHILLEGVPGLAKTLSVNTLAKTM 70 (331)
T ss_dssp HHHHHHHHHHHHTCCEEEESCCCHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHcCCeEEEECCCCCcHHHHHHHHHHHh
Confidence 3345566667778899999999999997776555443
No 298
>3kta_A Chromosome segregation protein SMC; structural maintenance of chromosomes, ABC ATPase, CFTR adenylate kinase, AP5A, transferase; HET: AP5; 1.63A {Pyrococcus furiosus} PDB: 1xex_A* 1xew_X*
Probab=86.51 E-value=0.44 Score=43.40 Aligned_cols=23 Identities=39% Similarity=0.377 Sum_probs=18.9
Q ss_pred CEEEEEcCCCCcHHHHHHHHHHh
Q 006122 66 ATTIIVGETGSGKTTQIPQYLKE 88 (660)
Q Consensus 66 ~~vii~apTGsGKT~~ip~~l~~ 88 (660)
...+|+||+|||||+++-.+..-
T Consensus 27 g~~~i~G~NGsGKStll~ai~~~ 49 (182)
T 3kta_A 27 GFTAIVGANGSGKSNIGDAILFV 49 (182)
T ss_dssp SEEEEEECTTSSHHHHHHHHHHH
T ss_pred CcEEEECCCCCCHHHHHHHHHHH
Confidence 37899999999999888766543
No 299
>3u4q_A ATP-dependent helicase/nuclease subunit A; helicase, nuclease, double strand DNA repair, protein-DNA CO hydrolase-DNA complex; HET: DNA; 2.80A {Bacillus subtilis} PDB: 3u44_A*
Probab=86.50 E-value=0.77 Score=55.41 Aligned_cols=69 Identities=19% Similarity=0.181 Sum_probs=42.2
Q ss_pred CCCcHHHHHHHHHHHhcCCEEEEEcCCCCcHHHHHHHHHHhcccc-----CCCeEEEEeCchHHHHHHHHHHHHHHh
Q 006122 48 RLPVYKYRTAILYLVETHATTIIVGETGSGKTTQIPQYLKEAGWA-----DGGRVIACTQPRRLAVQAVASRVAEEM 119 (660)
Q Consensus 48 ~lPi~~~~~~i~~~l~~~~~vii~apTGsGKT~~ip~~l~~~~~~-----~~~~~i~v~p~r~la~~~~~~~~~~~~ 119 (660)
.......|.+++.. .+++++|.|..|||||+.+-.-+...... ...+++++|.++.. +..+.+|+....
T Consensus 8 ~~~~t~eQ~~~i~~--~~~~~~v~a~AGSGKT~vl~~ri~~ll~~~~~~~~~~~il~~Tft~~a-a~e~~~ri~~~l 81 (1232)
T 3u4q_A 8 DSTWTDDQWNAIVS--TGQDILVAAAAGSGKTAVLVERMIRKITAEENPIDVDRLLVVTFTNAS-AAEMKHRIAEAL 81 (1232)
T ss_dssp --CCCHHHHHHHHC--CSSCEEEEECTTCCHHHHHHHHHHHHHSCSSSCCCGGGEEEECSSHHH-HHHHHHHHHHHH
T ss_pred CCCCCHHHHHHHhC--CCCCEEEEecCCCcHHHHHHHHHHHHHhcCCCCCCccceEEEeccHHH-HHHHHHHHHHHH
Confidence 34566777777764 36789999999999996654332222111 22456777777655 445666665543
No 300
>2qi9_C Vitamin B12 import ATP-binding protein BTUD; inner membrane, membrane, transmembrane, transport, ATP- binding, hydrolase, nucleotide-binding, periplasm; HET: 1PE; 2.60A {Escherichia coli} PDB: 1l7v_C* 4dbl_C
Probab=86.47 E-value=0.29 Score=47.47 Aligned_cols=25 Identities=24% Similarity=0.405 Sum_probs=21.2
Q ss_pred hcCCEEEEEcCCCCcHHHHHHHHHH
Q 006122 63 ETHATTIIVGETGSGKTTQIPQYLK 87 (660)
Q Consensus 63 ~~~~~vii~apTGsGKT~~ip~~l~ 87 (660)
..++.+.|.||.||||||++-.+.-
T Consensus 24 ~~Ge~~~liG~NGsGKSTLlk~l~G 48 (249)
T 2qi9_C 24 RAGEILHLVGPNGAGKSTLLARMAG 48 (249)
T ss_dssp ETTCEEEEECCTTSSHHHHHHHHTT
T ss_pred cCCCEEEEECCCCCcHHHHHHHHhC
Confidence 5688999999999999999876543
No 301
>3hr8_A Protein RECA; alpha and beta proteins (A/B, A+B), ATP-binding, cytoplasm, damage, DNA recombination, DNA repair, DNA-binding; 1.95A {Thermotoga maritima}
Probab=86.37 E-value=0.39 Score=49.18 Aligned_cols=42 Identities=26% Similarity=0.199 Sum_probs=31.4
Q ss_pred HhcCCEEEEEcCCCCcHHHHHHHHHHhccccCCCeEEEEeCch
Q 006122 62 VETHATTIIVGETGSGKTTQIPQYLKEAGWADGGRVIACTQPR 104 (660)
Q Consensus 62 l~~~~~vii~apTGsGKT~~ip~~l~~~~~~~~~~~i~v~p~r 104 (660)
+..+.+++|.||+|+||||++-+++..... .+++++++....
T Consensus 58 i~~G~i~~I~GppGsGKSTLal~la~~~~~-~gg~VlyId~E~ 99 (356)
T 3hr8_A 58 YPRGRIVEIFGQESSGKTTLALHAIAEAQK-MGGVAAFIDAEH 99 (356)
T ss_dssp EETTEEEEEEESTTSSHHHHHHHHHHHHHH-TTCCEEEEESSC
T ss_pred ccCCcEEEEECCCCCCHHHHHHHHHHHHHh-cCCeEEEEeccc
Confidence 345789999999999999988887766532 445677776654
No 302
>2ihy_A ABC transporter, ATP-binding protein; ATPase, ABC cassette, hydrolase; HET: MSE; 1.90A {Staphylococcus aureus}
Probab=86.34 E-value=0.3 Score=48.32 Aligned_cols=25 Identities=28% Similarity=0.348 Sum_probs=21.3
Q ss_pred HhcCCEEEEEcCCCCcHHHHHHHHH
Q 006122 62 VETHATTIIVGETGSGKTTQIPQYL 86 (660)
Q Consensus 62 l~~~~~vii~apTGsGKT~~ip~~l 86 (660)
+..++.+.|.||+||||||++-.+.
T Consensus 44 i~~Ge~~~liG~NGsGKSTLlk~l~ 68 (279)
T 2ihy_A 44 IAKGDKWILYGLNGAGKTTLLNILN 68 (279)
T ss_dssp EETTCEEEEECCTTSSHHHHHHHHT
T ss_pred EcCCCEEEEECCCCCcHHHHHHHHh
Confidence 3578899999999999999987654
No 303
>2nq2_C Hypothetical ABC transporter ATP-binding protein HI1470; putative iron chelatin ABC transporter, nucleotide binding domain; 2.40A {Haemophilus influenzae}
Probab=86.31 E-value=0.3 Score=47.57 Aligned_cols=25 Identities=24% Similarity=0.436 Sum_probs=21.3
Q ss_pred hcCCEEEEEcCCCCcHHHHHHHHHH
Q 006122 63 ETHATTIIVGETGSGKTTQIPQYLK 87 (660)
Q Consensus 63 ~~~~~vii~apTGsGKT~~ip~~l~ 87 (660)
..++.+.|.||+||||||++-.+.-
T Consensus 29 ~~Ge~~~l~G~nGsGKSTLl~~l~G 53 (253)
T 2nq2_C 29 NKGDILAVLGQNGCGKSTLLDLLLG 53 (253)
T ss_dssp ETTCEEEEECCSSSSHHHHHHHHTT
T ss_pred CCCCEEEEECCCCCCHHHHHHHHhC
Confidence 5788999999999999999876543
No 304
>1y63_A LMAJ004144AAA protein; structural genomics, protein structure initiative, PSI, SGPP structural genomics of pathogenic protozoa consortium; HET: ADP; 1.70A {Leishmania major} SCOP: c.37.1.1
Probab=86.29 E-value=0.5 Score=43.28 Aligned_cols=25 Identities=28% Similarity=0.416 Sum_probs=20.4
Q ss_pred cCCEEEEEcCCCCcHHHHHHHHHHh
Q 006122 64 THATTIIVGETGSGKTTQIPQYLKE 88 (660)
Q Consensus 64 ~~~~vii~apTGsGKT~~ip~~l~~ 88 (660)
.+..++++|+.||||||+.-.+...
T Consensus 9 ~~~~I~l~G~~GsGKSTv~~~La~~ 33 (184)
T 1y63_A 9 KGINILITGTPGTGKTSMAEMIAAE 33 (184)
T ss_dssp SSCEEEEECSTTSSHHHHHHHHHHH
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHh
Confidence 4568999999999999988766544
No 305
>1f2t_A RAD50 ABC-ATPase; DNA double-strand break repair, replication; 1.60A {Pyrococcus furiosus} SCOP: c.37.1.12 PDB: 1f2u_A* 1us8_A*
Probab=86.27 E-value=0.47 Score=41.93 Aligned_cols=21 Identities=33% Similarity=0.703 Sum_probs=17.5
Q ss_pred CEEEEEcCCCCcHHHHHHHHH
Q 006122 66 ATTIIVGETGSGKTTQIPQYL 86 (660)
Q Consensus 66 ~~vii~apTGsGKT~~ip~~l 86 (660)
...+|.||+|||||+++-.+.
T Consensus 24 g~~~I~G~NGsGKStil~Ai~ 44 (149)
T 1f2t_A 24 GINLIIGQNGSGKSSLLDAIL 44 (149)
T ss_dssp EEEEEECCTTSSHHHHHHHHH
T ss_pred CeEEEECCCCCCHHHHHHHHH
Confidence 478999999999998876554
No 306
>1zuh_A Shikimate kinase; alpha-beta protein, transferase; 1.80A {Helicobacter pylori} PDB: 1zui_A* 3hr7_A 3muf_A* 3mrs_A 3n2e_A*
Probab=86.23 E-value=0.5 Score=42.39 Aligned_cols=25 Identities=20% Similarity=0.282 Sum_probs=20.0
Q ss_pred CCEEEEEcCCCCcHHHHHHHHHHhc
Q 006122 65 HATTIIVGETGSGKTTQIPQYLKEA 89 (660)
Q Consensus 65 ~~~vii~apTGsGKT~~ip~~l~~~ 89 (660)
-++++|.|+.||||||+.-.+....
T Consensus 7 ~~~i~l~G~~GsGKSTva~~La~~l 31 (168)
T 1zuh_A 7 MQHLVLIGFMGSGKSSLAQELGLAL 31 (168)
T ss_dssp -CEEEEESCTTSSHHHHHHHHHHHH
T ss_pred cceEEEECCCCCCHHHHHHHHHHHh
Confidence 3789999999999999887665444
No 307
>2yz2_A Putative ABC transporter ATP-binding protein TM_0; cobalt transport, TM02 hydrolase, inner membrane, membrane, nucleotide-binding; 2.30A {Thermotoga maritima}
Probab=86.18 E-value=0.31 Score=47.84 Aligned_cols=25 Identities=28% Similarity=0.482 Sum_probs=21.1
Q ss_pred HhcCCEEEEEcCCCCcHHHHHHHHH
Q 006122 62 VETHATTIIVGETGSGKTTQIPQYL 86 (660)
Q Consensus 62 l~~~~~vii~apTGsGKT~~ip~~l 86 (660)
+..++.+.|.||+||||||++-.+.
T Consensus 30 i~~Ge~~~liG~nGsGKSTLl~~i~ 54 (266)
T 2yz2_A 30 INEGECLLVAGNTGSGKSTLLQIVA 54 (266)
T ss_dssp ECTTCEEEEECSTTSSHHHHHHHHT
T ss_pred EcCCCEEEEECCCCCcHHHHHHHHh
Confidence 3578899999999999999987654
No 308
>2rhm_A Putative kinase; P-loop containing nucleoside triphosphate hydrolases fold, S genomics, joint center for structural genomics, JCSG; HET: MSE; 1.70A {Chloroflexus aurantiacus}
Probab=86.18 E-value=0.42 Score=43.91 Aligned_cols=26 Identities=31% Similarity=0.335 Sum_probs=20.7
Q ss_pred cCCEEEEEcCCCCcHHHHHHHHHHhc
Q 006122 64 THATTIIVGETGSGKTTQIPQYLKEA 89 (660)
Q Consensus 64 ~~~~vii~apTGsGKT~~ip~~l~~~ 89 (660)
.+..+++.|+.||||||+.-.+....
T Consensus 4 ~~~~I~l~G~~GsGKST~~~~L~~~l 29 (193)
T 2rhm_A 4 TPALIIVTGHPATGKTTLSQALATGL 29 (193)
T ss_dssp CCEEEEEEESTTSSHHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHc
Confidence 34578999999999999987765443
No 309
>1q57_A DNA primase/helicase; dntpase, DNA replication, transferase; HET: DNA; 3.45A {Enterobacteria phage T7} SCOP: c.37.1.11 e.13.1.2
Probab=86.17 E-value=0.37 Score=52.10 Aligned_cols=49 Identities=14% Similarity=0.004 Sum_probs=36.6
Q ss_pred HHHHHHHHhcCCEEEEEcCCCCcHHHHHHHHHHhccccCCCeEEEEeCc
Q 006122 55 RTAILYLVETHATTIIVGETGSGKTTQIPQYLKEAGWADGGRVIACTQP 103 (660)
Q Consensus 55 ~~~i~~~l~~~~~vii~apTGsGKT~~ip~~l~~~~~~~~~~~i~v~p~ 103 (660)
-++++.-+..+..++|.|++|+|||+++-+++.......+.++++++-.
T Consensus 232 LD~~lgGl~~G~l~li~G~pG~GKT~lal~~a~~~a~~~g~~vl~~s~E 280 (503)
T 1q57_A 232 INDKTLGARGGEVIMVTSGSGMVMSTFVRQQALQWGTAMGKKVGLAMLE 280 (503)
T ss_dssp HHHHHCCCCTTCEEEEEESSCHHHHHHHHHHHHHHTTTSCCCEEEEESS
T ss_pred hhHhhcccCCCeEEEEeecCCCCchHHHHHHHHHHHHhcCCcEEEEecc
Confidence 3455555667899999999999999998888887654435567777643
No 310
>1np6_A Molybdopterin-guanine dinucleotide biosynthesis protein B; mixed alpha-beta fold, elongated beta-sheet, walker A motif, P-loop structural motif; 1.90A {Escherichia coli} SCOP: c.37.1.10 PDB: 1p9n_A
Probab=86.04 E-value=0.82 Score=41.56 Aligned_cols=24 Identities=21% Similarity=0.289 Sum_probs=20.2
Q ss_pred CCEEEEEcCCCCcHHHHHHHHHHh
Q 006122 65 HATTIIVGETGSGKTTQIPQYLKE 88 (660)
Q Consensus 65 ~~~vii~apTGsGKT~~ip~~l~~ 88 (660)
-..++++|++||||||++..++..
T Consensus 6 ~~~i~i~G~sGsGKTTl~~~l~~~ 29 (174)
T 1np6_A 6 IPLLAFAAWSGTGKTTLLKKLIPA 29 (174)
T ss_dssp CCEEEEECCTTSCHHHHHHHHHHH
T ss_pred ceEEEEEeCCCCCHHHHHHHHHHh
Confidence 357899999999999998877654
No 311
>2f1r_A Molybdopterin-guanine dinucleotide biosynthesis protein B (MOBB); structural genomics, PSI, protein structure initiative; 2.10A {Archaeoglobus fulgidus}
Probab=86.02 E-value=0.28 Score=44.55 Aligned_cols=24 Identities=38% Similarity=0.414 Sum_probs=19.2
Q ss_pred CEEEEEcCCCCcHHHHHHHHHHhc
Q 006122 66 ATTIIVGETGSGKTTQIPQYLKEA 89 (660)
Q Consensus 66 ~~vii~apTGsGKT~~ip~~l~~~ 89 (660)
+.+.|+|++||||||++-.++...
T Consensus 3 ~~v~IvG~SGsGKSTL~~~L~~~~ 26 (171)
T 2f1r_A 3 LILSIVGTSDSGKTTLITRMMPIL 26 (171)
T ss_dssp CEEEEEESCHHHHHHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHHh
Confidence 468899999999999887665543
No 312
>3lda_A DNA repair protein RAD51; DNA binding protein, ATP-binding, DNA damage, DNA recombinat repair, nucleotide-binding; HET: DNA; 2.50A {Saccharomyces cerevisiae} PDB: 1szp_A*
Probab=85.96 E-value=0.54 Score=48.98 Aligned_cols=41 Identities=20% Similarity=0.217 Sum_probs=29.2
Q ss_pred hcCCEEEEEcCCCCcHHHHHHHHHHhcccc-----CCCeEEEEeCc
Q 006122 63 ETHATTIIVGETGSGKTTQIPQYLKEAGWA-----DGGRVIACTQP 103 (660)
Q Consensus 63 ~~~~~vii~apTGsGKT~~ip~~l~~~~~~-----~~~~~i~v~p~ 103 (660)
..+..+.|.||+||||||++-+++...... .+.+++++.-.
T Consensus 176 ~~Gei~~I~G~sGsGKTTLl~~la~~~~~p~~~Gg~~~~viyid~E 221 (400)
T 3lda_A 176 ETGSITELFGEFRTGKSQLCHTLAVTCQIPLDIGGGEGKCLYIDTE 221 (400)
T ss_dssp ETTSEEEEEESTTSSHHHHHHHHHHHTTSCGGGTCCSSEEEEEESS
T ss_pred CCCcEEEEEcCCCCChHHHHHHHHHHhccCcccCCCCCcEEEEeCC
Confidence 357899999999999999988776544321 23556776543
No 313
>2zr9_A Protein RECA, recombinase A; recombination, RECA mutants, DNA-repair, ATP-binding, DNA DA recombination, DNA repair, DNA-binding; HET: DTP; 2.50A {Mycobacterium smegmatis str} PDB: 2zr0_A* 2zra_A* 2zrb_A 2zrm_A* 1ubc_A* 1ubf_A* 1ubg_A* 1ube_A* 2g88_A* 2odw_A* 2oe2_A 2oep_A* 2oes_A 2ofo_A 2zr7_A 2odn_A* 2zrn_A 2zro_A* 2zrp_A* 2zre_A* ...
Probab=85.92 E-value=0.45 Score=48.68 Aligned_cols=42 Identities=24% Similarity=0.144 Sum_probs=31.3
Q ss_pred HHhcCCEEEEEcCCCCcHHHHHHHHHHhccccCCCeEEEEeCc
Q 006122 61 LVETHATTIIVGETGSGKTTQIPQYLKEAGWADGGRVIACTQP 103 (660)
Q Consensus 61 ~l~~~~~vii~apTGsGKT~~ip~~l~~~~~~~~~~~i~v~p~ 103 (660)
-+..+..++|.||+|||||+++-+++..... .+.+++++.-.
T Consensus 57 Gl~~G~iv~I~G~pGsGKTtLal~la~~~~~-~g~~vlyi~~E 98 (349)
T 2zr9_A 57 GLPRGRVIEIYGPESSGKTTVALHAVANAQA-AGGIAAFIDAE 98 (349)
T ss_dssp SEETTSEEEEEESTTSSHHHHHHHHHHHHHH-TTCCEEEEESS
T ss_pred CccCCeEEEEECCCCCCHHHHHHHHHHHHHh-CCCeEEEEECC
Confidence 3446889999999999999988877766532 35567777654
No 314
>1cke_A CK, MSSA, protein (cytidine monophosphate kinase); nucleotide monophosphate kinase,, transferase; 1.75A {Escherichia coli} SCOP: c.37.1.1 PDB: 1kdo_A* 1kdp_A* 1kdr_A* 1kdt_A* 2cmk_A* 2fem_A 2feo_A*
Probab=85.86 E-value=0.45 Score=45.06 Aligned_cols=25 Identities=24% Similarity=0.282 Sum_probs=20.2
Q ss_pred CCEEEEEcCCCCcHHHHHHHHHHhc
Q 006122 65 HATTIIVGETGSGKTTQIPQYLKEA 89 (660)
Q Consensus 65 ~~~vii~apTGsGKT~~ip~~l~~~ 89 (660)
+..+.|.||+||||||++-.+....
T Consensus 5 ~~~i~i~G~~GsGKSTl~~~L~~~~ 29 (227)
T 1cke_A 5 APVITIDGPSGAGKGTLCKAMAEAL 29 (227)
T ss_dssp SCEEEEECCTTSSHHHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHh
Confidence 4578999999999999987665443
No 315
>3crm_A TRNA delta(2)-isopentenylpyrophosphate transferase; ATP-binding, nucleotide-binding, nucleotidyltransferase, tRNA processing; 1.90A {Pseudomonas aeruginosa} PDB: 3crq_A 3crr_A
Probab=85.81 E-value=0.5 Score=47.57 Aligned_cols=23 Identities=22% Similarity=0.328 Sum_probs=18.3
Q ss_pred CEEEEEcCCCCcHHHHHHHHHHh
Q 006122 66 ATTIIVGETGSGKTTQIPQYLKE 88 (660)
Q Consensus 66 ~~vii~apTGsGKT~~ip~~l~~ 88 (660)
..++|+||||||||++.-.+...
T Consensus 6 ~~i~i~GptGsGKTtla~~La~~ 28 (323)
T 3crm_A 6 PAIFLMGPTAAGKTDLAMALADA 28 (323)
T ss_dssp EEEEEECCTTSCHHHHHHHHHHH
T ss_pred cEEEEECCCCCCHHHHHHHHHHH
Confidence 46899999999999877655544
No 316
>1pzn_A RAD51, DNA repair and recombination protein RAD51, RADA; heptameric ring, heptamer, ring, oligomer, RAD51 polymerizat motif; HET: DNA; 2.85A {Pyrococcus furiosus} SCOP: a.60.4.1 c.37.1.11
Probab=85.70 E-value=0.46 Score=48.62 Aligned_cols=40 Identities=35% Similarity=0.363 Sum_probs=28.6
Q ss_pred hcCCEEEEEcCCCCcHHHHHHHHHHhccc--cC---CCeEEEEeC
Q 006122 63 ETHATTIIVGETGSGKTTQIPQYLKEAGW--AD---GGRVIACTQ 102 (660)
Q Consensus 63 ~~~~~vii~apTGsGKT~~ip~~l~~~~~--~~---~~~~i~v~p 102 (660)
..+..+.|.||+||||||++-+++..... .. ++++|++.-
T Consensus 129 ~~G~i~~I~G~~GsGKTTL~~~l~~~~~~~~~~Gg~~G~vi~i~~ 173 (349)
T 1pzn_A 129 ETQAITEVFGEFGSGKTQLAHTLAVMVQLPPEEGGLNGSVIWIDT 173 (349)
T ss_dssp ESSEEEEEEESTTSSHHHHHHHHHHHTTSCGGGTSCSCEEEEEES
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHhccchhcCCCCCeEEEEeC
Confidence 46789999999999999998887766421 11 245566643
No 317
>1in4_A RUVB, holliday junction DNA helicase RUVB; AAA+-class ATPase, winged-helix domain, ATP hydrolysis, walker A, walker B, sensor 1, sensor 2; HET: ADP; 1.60A {Thermotoga maritima} SCOP: a.4.5.11 c.37.1.20 PDB: 1in5_A* 1in6_A* 1in8_A* 1in7_A* 1j7k_A*
Probab=85.69 E-value=0.61 Score=47.36 Aligned_cols=24 Identities=29% Similarity=0.360 Sum_probs=19.9
Q ss_pred CEEEEEcCCCCcHHHHHHHHHHhc
Q 006122 66 ATTIIVGETGSGKTTQIPQYLKEA 89 (660)
Q Consensus 66 ~~vii~apTGsGKT~~ip~~l~~~ 89 (660)
+++++.||+|+||||++-.+....
T Consensus 52 ~~~ll~Gp~G~GKTTLa~~ia~~l 75 (334)
T 1in4_A 52 DHVLLAGPPGLGKTTLAHIIASEL 75 (334)
T ss_dssp CCEEEESSTTSSHHHHHHHHHHHH
T ss_pred CeEEEECCCCCcHHHHHHHHHHHh
Confidence 679999999999998887665543
No 318
>3d3q_A TRNA delta(2)-isopentenylpyrophosphate transferase; alpha-beta protein, structural genomics, PSI-2; 2.70A {Staphylococcus epidermidis atcc 12228}
Probab=85.66 E-value=0.49 Score=47.92 Aligned_cols=23 Identities=39% Similarity=0.401 Sum_probs=18.4
Q ss_pred CEEEEEcCCCCcHHHHHHHHHHh
Q 006122 66 ATTIIVGETGSGKTTQIPQYLKE 88 (660)
Q Consensus 66 ~~vii~apTGsGKT~~ip~~l~~ 88 (660)
..++|+||||||||++.-.+...
T Consensus 8 ~lI~I~GptgSGKTtla~~La~~ 30 (340)
T 3d3q_A 8 FLIVIVGPTASGKTELSIEVAKK 30 (340)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHH
T ss_pred ceEEEECCCcCcHHHHHHHHHHH
Confidence 47899999999999877655443
No 319
>3hws_A ATP-dependent CLP protease ATP-binding subunit CL; CLPXP, AAA+ molecular machine, hexamer, asymmetric,, ATP-BIN chaperone, metal-binding; HET: ADP; 3.25A {Escherichia coli} PDB: 3hte_A
Probab=85.58 E-value=0.86 Score=46.79 Aligned_cols=26 Identities=27% Similarity=0.414 Sum_probs=20.2
Q ss_pred cCCEEEEEcCCCCcHHHHHHHHHHhc
Q 006122 64 THATTIIVGETGSGKTTQIPQYLKEA 89 (660)
Q Consensus 64 ~~~~vii~apTGsGKT~~ip~~l~~~ 89 (660)
....+++.||+|+|||+++-.+....
T Consensus 50 ~~~~vll~GppGtGKT~la~~ia~~~ 75 (363)
T 3hws_A 50 GKSNILLIGPTGSGKTLLAETLARLL 75 (363)
T ss_dssp CCCCEEEECCTTSSHHHHHHHHHHHT
T ss_pred CCCeEEEECCCCCCHHHHHHHHHHHc
Confidence 45679999999999998776555443
No 320
>2ius_A DNA translocase FTSK; nucleotide-binding, chromosome partition, ATP-binding, DNA- binding, cell division, transmembrane, inner membrane; HET: DNA; 2.7A {Escherichia coli} PDB: 2j5p_A*
Probab=85.55 E-value=0.8 Score=49.19 Aligned_cols=25 Identities=20% Similarity=0.408 Sum_probs=20.3
Q ss_pred hcCCEEEEEcCCCCcHHHHHHHHHH
Q 006122 63 ETHATTIIVGETGSGKTTQIPQYLK 87 (660)
Q Consensus 63 ~~~~~vii~apTGsGKT~~ip~~l~ 87 (660)
.+..+++|.|+||||||+.+-.++.
T Consensus 165 ~~~pHlLIaG~TGSGKSt~L~~li~ 189 (512)
T 2ius_A 165 AKMPHLLVAGTTGSGASVGVNAMIL 189 (512)
T ss_dssp GGSCSEEEECCTTSSHHHHHHHHHH
T ss_pred ccCceEEEECCCCCCHHHHHHHHHH
Confidence 4578899999999999987765544
No 321
>2bbw_A Adenylate kinase 4, AK4; nucleotide kinase, nucleotide binding, human, structura genomics, structural genomics consortium, SGC, transferase; HET: GP5; 2.05A {Homo sapiens} PDB: 2ar7_A* 3ndp_A
Probab=85.55 E-value=0.51 Score=45.50 Aligned_cols=25 Identities=28% Similarity=0.392 Sum_probs=20.8
Q ss_pred CCEEEEEcCCCCcHHHHHHHHHHhc
Q 006122 65 HATTIIVGETGSGKTTQIPQYLKEA 89 (660)
Q Consensus 65 ~~~vii~apTGsGKT~~ip~~l~~~ 89 (660)
...++|.||.||||||++-.+....
T Consensus 27 ~~~i~l~G~~GsGKSTl~k~La~~l 51 (246)
T 2bbw_A 27 LLRAVILGPPGSGKGTVCQRIAQNF 51 (246)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHHH
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHh
Confidence 4689999999999999988766443
No 322
>3t61_A Gluconokinase; PSI-biology, structural genomics, protein structure initiati YORK structural genomics research consortium, nysgrc; 2.20A {Sinorhizobium meliloti}
Probab=85.54 E-value=0.47 Score=44.10 Aligned_cols=24 Identities=21% Similarity=0.419 Sum_probs=19.6
Q ss_pred CEEEEEcCCCCcHHHHHHHHHHhc
Q 006122 66 ATTIIVGETGSGKTTQIPQYLKEA 89 (660)
Q Consensus 66 ~~vii~apTGsGKT~~ip~~l~~~ 89 (660)
..++|+|+.||||||++-.+....
T Consensus 19 ~~I~l~G~~GsGKSTla~~L~~~l 42 (202)
T 3t61_A 19 GSIVVMGVSGSGKSSVGEAIAEAC 42 (202)
T ss_dssp SCEEEECSTTSCHHHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHHh
Confidence 479999999999999887665443
No 323
>4eaq_A DTMP kinase, thymidylate kinase; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, MTBI, transferase; HET: ATM; 1.85A {Staphylococcus aureus subsp} PDB: 4dwj_A* 4f4i_A
Probab=85.50 E-value=0.76 Score=43.86 Aligned_cols=27 Identities=33% Similarity=0.318 Sum_probs=22.3
Q ss_pred cCCEEEEEcCCCCcHHHHHHHHHHhcc
Q 006122 64 THATTIIVGETGSGKTTQIPQYLKEAG 90 (660)
Q Consensus 64 ~~~~vii~apTGsGKT~~ip~~l~~~~ 90 (660)
.+..+++.|+.||||||++..+.....
T Consensus 25 ~g~~i~i~G~~GsGKsT~~~~l~~~l~ 51 (229)
T 4eaq_A 25 MSAFITFEGPEGSGKTTVINEVYHRLV 51 (229)
T ss_dssp CCEEEEEECCTTSCHHHHHHHHHHHHT
T ss_pred CCeEEEEEcCCCCCHHHHHHHHHHHHh
Confidence 567899999999999999987765543
No 324
>3fb4_A Adenylate kinase; psychrophIle, phosphotransferase, ATP-binding, nucleotide-binding, transferase; HET: AP5; 2.00A {Marinibacillus marinus}
Probab=85.44 E-value=0.52 Score=44.30 Aligned_cols=23 Identities=30% Similarity=0.531 Sum_probs=18.8
Q ss_pred EEEEEcCCCCcHHHHHHHHHHhc
Q 006122 67 TTIIVGETGSGKTTQIPQYLKEA 89 (660)
Q Consensus 67 ~vii~apTGsGKT~~ip~~l~~~ 89 (660)
.++|.|+.||||||+.-.+....
T Consensus 2 ~I~l~G~~GsGKsT~a~~L~~~~ 24 (216)
T 3fb4_A 2 NIVLMGLPGAGKGTQAEQIIEKY 24 (216)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHh
Confidence 47899999999999988765544
No 325
>3dl0_A Adenylate kinase; phosphotransferase, zinc coordination, ATP-binding, binding, nucleotide biosynthesis, nucleotide-binding, trans; HET: AP5; 1.58A {Bacillus subtilis} PDB: 1p3j_A* 2ori_A* 2eu8_A* 2oo7_A* 2p3s_A* 2qaj_A* 2osb_A* 3dkv_A* 1zin_A* 1zio_A* 1zip_A* 1s3g_A*
Probab=85.37 E-value=0.56 Score=44.08 Aligned_cols=23 Identities=26% Similarity=0.436 Sum_probs=18.9
Q ss_pred EEEEEcCCCCcHHHHHHHHHHhc
Q 006122 67 TTIIVGETGSGKTTQIPQYLKEA 89 (660)
Q Consensus 67 ~vii~apTGsGKT~~ip~~l~~~ 89 (660)
.++|.|+.||||||+.-.+....
T Consensus 2 ~I~l~G~~GsGKsT~a~~L~~~~ 24 (216)
T 3dl0_A 2 NLVLMGLPGAGKGTQGERIVEKY 24 (216)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHHHh
Confidence 37899999999999988765544
No 326
>2qt1_A Nicotinamide riboside kinase 1; non-protein kinase, NAD+, NRK1, nicotinic acid riboside kinase activity, NAD biosynthesis; HET: NNR; 1.32A {Homo sapiens} PDB: 2qsy_A* 2qsz_A* 2qt0_A* 2p0e_A* 2qg6_A* 2ql6_A*
Probab=85.35 E-value=0.34 Score=45.29 Aligned_cols=25 Identities=36% Similarity=0.254 Sum_probs=20.2
Q ss_pred hcCCEEEEEcCCCCcHHHHHHHHHH
Q 006122 63 ETHATTIIVGETGSGKTTQIPQYLK 87 (660)
Q Consensus 63 ~~~~~vii~apTGsGKT~~ip~~l~ 87 (660)
..+..+.|.|++||||||++-.+..
T Consensus 19 ~~~~~i~i~G~~GsGKSTl~~~L~~ 43 (207)
T 2qt1_A 19 SKTFIIGISGVTNSGKTTLAKNLQK 43 (207)
T ss_dssp CCCEEEEEEESTTSSHHHHHHHHHT
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHH
Confidence 4566789999999999998876543
No 327
>1nks_A Adenylate kinase; thermophilic, transferase; HET: AMP ADP; 2.57A {Sulfolobus acidocaldarius} SCOP: c.37.1.1
Probab=85.07 E-value=0.55 Score=43.00 Aligned_cols=23 Identities=26% Similarity=0.378 Sum_probs=19.0
Q ss_pred EEEEEcCCCCcHHHHHHHHHHhc
Q 006122 67 TTIIVGETGSGKTTQIPQYLKEA 89 (660)
Q Consensus 67 ~vii~apTGsGKT~~ip~~l~~~ 89 (660)
.++|.|+.||||||+.-.+....
T Consensus 3 ~I~i~G~~GsGKsT~~~~L~~~l 25 (194)
T 1nks_A 3 IGIVTGIPGVGKSTVLAKVKEIL 25 (194)
T ss_dssp EEEEEECTTSCHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHH
Confidence 58999999999999987765543
No 328
>1lv7_A FTSH; alpha/beta domain, four helix bundle, hydrolase; 1.50A {Escherichia coli} SCOP: c.37.1.20
Probab=85.03 E-value=0.94 Score=43.84 Aligned_cols=25 Identities=32% Similarity=0.417 Sum_probs=19.7
Q ss_pred CCEEEEEcCCCCcHHHHHHHHHHhc
Q 006122 65 HATTIIVGETGSGKTTQIPQYLKEA 89 (660)
Q Consensus 65 ~~~vii~apTGsGKT~~ip~~l~~~ 89 (660)
...+++.||+|+|||+++-.+....
T Consensus 45 ~~~vll~G~~GtGKT~la~~la~~~ 69 (257)
T 1lv7_A 45 PKGVLMVGPPGTGKTLLAKAIAGEA 69 (257)
T ss_dssp CCEEEEECCTTSCHHHHHHHHHHHH
T ss_pred CCeEEEECcCCCCHHHHHHHHHHHc
Confidence 4569999999999998877665443
No 329
>1tev_A UMP-CMP kinase; ploop, NMP binding region, LID region, conformational changes, transferase; 2.10A {Homo sapiens} SCOP: c.37.1.1
Probab=85.00 E-value=0.54 Score=43.12 Aligned_cols=25 Identities=24% Similarity=0.442 Sum_probs=19.8
Q ss_pred CCEEEEEcCCCCcHHHHHHHHHHhc
Q 006122 65 HATTIIVGETGSGKTTQIPQYLKEA 89 (660)
Q Consensus 65 ~~~vii~apTGsGKT~~ip~~l~~~ 89 (660)
...+++.|++||||||+.-.+....
T Consensus 3 ~~~I~l~G~~GsGKsT~a~~L~~~~ 27 (196)
T 1tev_A 3 PLVVFVLGGPGAGKGTQCARIVEKY 27 (196)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHHHH
T ss_pred ceEEEEECCCCCCHHHHHHHHHHHh
Confidence 3568999999999999987665443
No 330
>3fvq_A Fe(3+) IONS import ATP-binding protein FBPC; nucleotide binding domain, ABC motor domain, ferric iron TRA ATP-binding, cell inner membrane; HET: ATP; 1.90A {Neisseria gonorrhoeae}
Probab=84.98 E-value=0.38 Score=49.27 Aligned_cols=25 Identities=28% Similarity=0.438 Sum_probs=21.4
Q ss_pred hcCCEEEEEcCCCCcHHHHHHHHHH
Q 006122 63 ETHATTIIVGETGSGKTTQIPQYLK 87 (660)
Q Consensus 63 ~~~~~vii~apTGsGKT~~ip~~l~ 87 (660)
..+..+.|.||+||||||++-.+.-
T Consensus 28 ~~Ge~~~llGpsGsGKSTLLr~iaG 52 (359)
T 3fvq_A 28 DPGEILFIIGASGCGKTTLLRCLAG 52 (359)
T ss_dssp CTTCEEEEEESTTSSHHHHHHHHHT
T ss_pred cCCCEEEEECCCCchHHHHHHHHhc
Confidence 5688999999999999999876654
No 331
>2onk_A Molybdate/tungstate ABC transporter, ATP-binding protein; membrane protein; 3.10A {Archaeoglobus fulgidus} SCOP: c.37.1.12
Probab=84.88 E-value=0.4 Score=46.21 Aligned_cols=24 Identities=21% Similarity=0.372 Sum_probs=20.1
Q ss_pred hcCCEEEEEcCCCCcHHHHHHHHHH
Q 006122 63 ETHATTIIVGETGSGKTTQIPQYLK 87 (660)
Q Consensus 63 ~~~~~vii~apTGsGKT~~ip~~l~ 87 (660)
.. +.+.|.||+||||||++-.+.-
T Consensus 23 ~~-e~~~liG~nGsGKSTLl~~l~G 46 (240)
T 2onk_A 23 GR-DYCVLLGPTGAGKSVFLELIAG 46 (240)
T ss_dssp CS-SEEEEECCTTSSHHHHHHHHHT
T ss_pred CC-EEEEEECCCCCCHHHHHHHHhC
Confidence 45 7899999999999999876653
No 332
>2pez_A Bifunctional 3'-phosphoadenosine 5'- phosphosulfate synthetase 1 (PAPS synthetase...; NMP-kinase fold, protein in complex with nucleic acid; HET: GGZ DAT; 1.40A {Homo sapiens} PDB: 2pey_A* 2ax4_A*
Probab=84.86 E-value=0.51 Score=42.86 Aligned_cols=24 Identities=29% Similarity=0.317 Sum_probs=19.5
Q ss_pred cCCEEEEEcCCCCcHHHHHHHHHH
Q 006122 64 THATTIIVGETGSGKTTQIPQYLK 87 (660)
Q Consensus 64 ~~~~vii~apTGsGKT~~ip~~l~ 87 (660)
.+..+++.|+.||||||+.-.+..
T Consensus 4 ~g~~i~l~G~~GsGKST~~~~L~~ 27 (179)
T 2pez_A 4 RGCTVWLTGLSGAGKTTVSMALEE 27 (179)
T ss_dssp CCEEEEEECCTTSSHHHHHHHHHH
T ss_pred CCcEEEEECCCCCCHHHHHHHHHH
Confidence 466789999999999988765544
No 333
>1zak_A Adenylate kinase; ATP:AMP-phosphotransferase, transferase; HET: AP5; 3.50A {Zea mays} SCOP: c.37.1.1 g.41.2.1
Probab=84.74 E-value=0.51 Score=44.65 Aligned_cols=25 Identities=28% Similarity=0.264 Sum_probs=20.5
Q ss_pred CCEEEEEcCCCCcHHHHHHHHHHhc
Q 006122 65 HATTIIVGETGSGKTTQIPQYLKEA 89 (660)
Q Consensus 65 ~~~vii~apTGsGKT~~ip~~l~~~ 89 (660)
...+++.|+.||||||+.-.+....
T Consensus 5 ~~~I~l~G~~GsGKsT~~~~La~~l 29 (222)
T 1zak_A 5 PLKVMISGAPASGKGTQCELIKTKY 29 (222)
T ss_dssp SCCEEEEESTTSSHHHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHh
Confidence 3568999999999999988776554
No 334
>2plr_A DTMP kinase, probable thymidylate kinase; TMP-binding, ATP-binding, structural GEN NPPSFA; HET: 1PE PGE EPE PG4; 1.60A {Sulfolobus tokodaii}
Probab=84.69 E-value=0.56 Score=43.70 Aligned_cols=26 Identities=23% Similarity=0.175 Sum_probs=21.1
Q ss_pred CCEEEEEcCCCCcHHHHHHHHHHhcc
Q 006122 65 HATTIIVGETGSGKTTQIPQYLKEAG 90 (660)
Q Consensus 65 ~~~vii~apTGsGKT~~ip~~l~~~~ 90 (660)
+..+++.|+.||||||+.-.+.....
T Consensus 4 ~~~I~i~G~~GsGKsT~~~~L~~~l~ 29 (213)
T 2plr_A 4 GVLIAFEGIDGSGKSSQATLLKDWIE 29 (213)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHHHHT
T ss_pred CeEEEEEcCCCCCHHHHHHHHHHHHh
Confidence 45789999999999999887765543
No 335
>2jaq_A Deoxyguanosine kinase; transferase, deoxyribonucleoside kinase; HET: DCP; 2.3A {Mycoplasma mycoides subsp} PDB: 2jat_A* 2jas_A*
Probab=84.69 E-value=0.61 Score=43.17 Aligned_cols=23 Identities=30% Similarity=0.429 Sum_probs=19.2
Q ss_pred EEEEEcCCCCcHHHHHHHHHHhc
Q 006122 67 TTIIVGETGSGKTTQIPQYLKEA 89 (660)
Q Consensus 67 ~vii~apTGsGKT~~ip~~l~~~ 89 (660)
.++|.|+.||||||++-.+....
T Consensus 2 ~I~i~G~~GsGKsT~~~~L~~~l 24 (205)
T 2jaq_A 2 KIAIFGTVGAGKSTISAEISKKL 24 (205)
T ss_dssp EEEEECCTTSCHHHHHHHHHHHH
T ss_pred EEEEECCCccCHHHHHHHHHHhc
Confidence 57899999999999988766544
No 336
>2jeo_A Uridine-cytidine kinase 1; UCK, transferase, ATP-binding, nucleoside kinase, nucleotide-binding; 2.50A {Homo sapiens} PDB: 2uvq_A*
Probab=84.63 E-value=0.46 Score=45.84 Aligned_cols=26 Identities=23% Similarity=0.202 Sum_probs=20.8
Q ss_pred HhcCCEEEEEcCCCCcHHHHHHHHHH
Q 006122 62 VETHATTIIVGETGSGKTTQIPQYLK 87 (660)
Q Consensus 62 l~~~~~vii~apTGsGKT~~ip~~l~ 87 (660)
+..+..+.|.||.||||||++-.+..
T Consensus 22 i~~g~iigI~G~~GsGKSTl~k~L~~ 47 (245)
T 2jeo_A 22 SMRPFLIGVSGGTASGKSTVCEKIME 47 (245)
T ss_dssp -CCSEEEEEECSTTSSHHHHHHHHHH
T ss_pred CCCCEEEEEECCCCCCHHHHHHHHHH
Confidence 45677899999999999998876544
No 337
>1aky_A Adenylate kinase; ATP:AMP phosphotransferase, myokinase, transferase (phosphotransferase); HET: AP5; 1.63A {Saccharomyces cerevisiae} SCOP: c.37.1.1 g.41.2.1 PDB: 2aky_A* 3aky_A* 1dvr_A*
Probab=84.50 E-value=0.69 Score=43.65 Aligned_cols=25 Identities=28% Similarity=0.537 Sum_probs=20.5
Q ss_pred CCEEEEEcCCCCcHHHHHHHHHHhc
Q 006122 65 HATTIIVGETGSGKTTQIPQYLKEA 89 (660)
Q Consensus 65 ~~~vii~apTGsGKT~~ip~~l~~~ 89 (660)
+..+++.|+.||||||+.-.+....
T Consensus 4 ~~~I~l~G~~GsGKsT~a~~La~~l 28 (220)
T 1aky_A 4 SIRMVLIGPPGAGKGTQAPNLQERF 28 (220)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHHH
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHc
Confidence 4578999999999999987766544
No 338
>4f4c_A Multidrug resistance protein PGP-1; ABC transporter, ATPase, multi-drug transporter, exporter, A binding, hydrolase,protein transport; HET: NDG NAG BMA MAN 0SA; 3.40A {Caenorhabditis elegans}
Probab=84.49 E-value=0.59 Score=56.72 Aligned_cols=27 Identities=33% Similarity=0.486 Sum_probs=22.7
Q ss_pred hcCCEEEEEcCCCCcHHHHHHHHHHhc
Q 006122 63 ETHATTIIVGETGSGKTTQIPQYLKEA 89 (660)
Q Consensus 63 ~~~~~vii~apTGsGKT~~ip~~l~~~ 89 (660)
..|+.+.|+||+||||||++-.++...
T Consensus 442 ~~G~~vaivG~sGsGKSTll~ll~~~~ 468 (1321)
T 4f4c_A 442 NAGQTVALVGSSGCGKSTIISLLLRYY 468 (1321)
T ss_dssp CTTCEEEEEECSSSCHHHHHHHHTTSS
T ss_pred cCCcEEEEEecCCCcHHHHHHHhcccc
Confidence 568999999999999999987666543
No 339
>1tf7_A KAIC; homohexamer, hexamer, circadian clock protein; HET: ATP; 2.80A {Synechococcus SP} SCOP: c.37.1.11 c.37.1.11 PDB: 3s1a_A* 1u9i_A* 2gbl_A* 3dvl_A* 3k0a_A* 3k09_A* 3jzm_A* 3k0e_A* 4dug_A* 3ua2_A* 3k0c_A* 3k0f_A*
Probab=84.46 E-value=0.41 Score=52.04 Aligned_cols=41 Identities=22% Similarity=0.181 Sum_probs=27.9
Q ss_pred HHhcCCEEEEEcCCCCcHHHHHHHHHHhccccCCCeEEEEe
Q 006122 61 LVETHATTIIVGETGSGKTTQIPQYLKEAGWADGGRVIACT 101 (660)
Q Consensus 61 ~l~~~~~vii~apTGsGKT~~ip~~l~~~~~~~~~~~i~v~ 101 (660)
.+..+..+.|.||+||||||++-+++.......+...|++.
T Consensus 35 ~i~~Ge~~~l~G~nGsGKSTL~~~~ll~Gl~~~~~g~i~v~ 75 (525)
T 1tf7_A 35 GLPIGRSTLVSGTSGTGKTLFSIQFLYNGIIEFDEPGVFVT 75 (525)
T ss_dssp SEETTSEEEEEESTTSSHHHHHHHHHHHHHHHHCCCEEEEE
T ss_pred CCCCCeEEEEEcCCCCCHHHHHHHHHHHHHHhCCCCEEEEE
Confidence 45678999999999999999988864332222123345554
No 340
>1rz3_A Hypothetical protein rbstp0775; MCSG, structural genomics, PSI, protein structure initiative; 1.90A {Geobacillus stearothermophilus} SCOP: c.37.1.6
Probab=84.46 E-value=0.98 Score=41.96 Aligned_cols=23 Identities=35% Similarity=0.216 Sum_probs=18.9
Q ss_pred CCEEEEEcCCCCcHHHHHHHHHH
Q 006122 65 HATTIIVGETGSGKTTQIPQYLK 87 (660)
Q Consensus 65 ~~~vii~apTGsGKT~~ip~~l~ 87 (660)
+..+.|.|++||||||++-.+..
T Consensus 22 ~~~i~i~G~~GsGKstl~~~l~~ 44 (201)
T 1rz3_A 22 RLVLGIDGLSRSGKTTLANQLSQ 44 (201)
T ss_dssp SEEEEEEECTTSSHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHH
Confidence 46789999999999988775544
No 341
>1nij_A Hypothetical protein YJIA; structural genomics, P-loop protein, GTP binding, structure function project, S2F, unknown function; 2.00A {Escherichia coli} SCOP: c.37.1.10 d.237.1.1
Probab=84.43 E-value=0.61 Score=47.05 Aligned_cols=23 Identities=43% Similarity=0.632 Sum_probs=19.5
Q ss_pred CEEEEEcCCCCcHHHHHHHHHHh
Q 006122 66 ATTIIVGETGSGKTTQIPQYLKE 88 (660)
Q Consensus 66 ~~vii~apTGsGKT~~ip~~l~~ 88 (660)
++++|+|+.||||||++-.++..
T Consensus 5 ~v~~i~G~~GaGKTTll~~l~~~ 27 (318)
T 1nij_A 5 AVTLLTGFLGAGKTTLLRHILNE 27 (318)
T ss_dssp EEEEEEESSSSSCHHHHHHHHHS
T ss_pred cEEEEEecCCCCHHHHHHHHHhh
Confidence 47899999999999999876644
No 342
>3cf0_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD, CDC48, ATP-binding, lipid-binding, nucle binding, nucleus, phosphoprotein, transport; HET: ADP; 3.00A {Mus musculus}
Probab=84.42 E-value=1.1 Score=44.73 Aligned_cols=27 Identities=22% Similarity=0.306 Sum_probs=21.5
Q ss_pred hcCCEEEEEcCCCCcHHHHHHHHHHhc
Q 006122 63 ETHATTIIVGETGSGKTTQIPQYLKEA 89 (660)
Q Consensus 63 ~~~~~vii~apTGsGKT~~ip~~l~~~ 89 (660)
..+..+++.||+|+|||+++-.+....
T Consensus 47 ~~~~~vLL~Gp~GtGKT~la~ala~~~ 73 (301)
T 3cf0_A 47 TPSKGVLFYGPPGCGKTLLAKAIANEC 73 (301)
T ss_dssp CCCSEEEEECSSSSSHHHHHHHHHHHT
T ss_pred CCCceEEEECCCCcCHHHHHHHHHHHh
Confidence 446789999999999998877665544
No 343
>2yvu_A Probable adenylyl-sulfate kinase; transferase, structural genomics, NPPSFA, national P protein structural and functional analyses; 2.10A {Aeropyrum pernix}
Probab=84.40 E-value=0.78 Score=41.92 Aligned_cols=26 Identities=27% Similarity=0.266 Sum_probs=20.8
Q ss_pred cCCEEEEEcCCCCcHHHHHHHHHHhc
Q 006122 64 THATTIIVGETGSGKTTQIPQYLKEA 89 (660)
Q Consensus 64 ~~~~vii~apTGsGKT~~ip~~l~~~ 89 (660)
.+..+++.|+.||||||++-.+....
T Consensus 12 ~~~~i~l~G~~GsGKsT~~~~L~~~l 37 (186)
T 2yvu_A 12 KGIVVWLTGLPGSGKTTIATRLADLL 37 (186)
T ss_dssp CCEEEEEECCTTSSHHHHHHHHHHHH
T ss_pred CCcEEEEEcCCCCCHHHHHHHHHHHH
Confidence 45679999999999999887665543
No 344
>1z47_A CYSA, putative ABC-transporter ATP-binding protein; alpha/beta motif, beta sandwich, ligand binding protein; 1.90A {Alicyclobacillus acidocaldarius}
Probab=84.37 E-value=0.43 Score=48.85 Aligned_cols=25 Identities=28% Similarity=0.335 Sum_probs=21.5
Q ss_pred hcCCEEEEEcCCCCcHHHHHHHHHH
Q 006122 63 ETHATTIIVGETGSGKTTQIPQYLK 87 (660)
Q Consensus 63 ~~~~~vii~apTGsGKT~~ip~~l~ 87 (660)
..+..+.|.||+||||||++-.+.-
T Consensus 39 ~~Ge~~~llGpnGsGKSTLLr~iaG 63 (355)
T 1z47_A 39 REGEMVGLLGPSGSGKTTILRLIAG 63 (355)
T ss_dssp ETTCEEEEECSTTSSHHHHHHHHHT
T ss_pred CCCCEEEEECCCCCcHHHHHHHHhC
Confidence 5789999999999999999876653
No 345
>2bbs_A Cystic fibrosis transmembrane conductance regulator; ATP binding cassette, transport protein; HET: ATP; 2.05A {Homo sapiens} PDB: 2bbt_A* 1xmi_A* 1xmj_A* 2bbo_A* 3si7_A* 1r0w_A 1q3h_A 1r0x_A* 1r0y_A* 1r0z_A* 1r10_A* 1xf9_A* 1xfa_A*
Probab=84.36 E-value=0.4 Score=47.63 Aligned_cols=25 Identities=28% Similarity=0.417 Sum_probs=21.1
Q ss_pred hcCCEEEEEcCCCCcHHHHHHHHHH
Q 006122 63 ETHATTIIVGETGSGKTTQIPQYLK 87 (660)
Q Consensus 63 ~~~~~vii~apTGsGKT~~ip~~l~ 87 (660)
..++.+.|.||+||||||++-.+.-
T Consensus 62 ~~Ge~~~i~G~NGsGKSTLlk~l~G 86 (290)
T 2bbs_A 62 ERGQLLAVAGSTGAGKTSLLMMIMG 86 (290)
T ss_dssp CTTCEEEEEESTTSSHHHHHHHHTT
T ss_pred cCCCEEEEECCCCCcHHHHHHHHhc
Confidence 4688999999999999999876543
No 346
>3rlf_A Maltose/maltodextrin import ATP-binding protein M; integral membrane protein, ATPase, ABC transporter, membrane transmembrane; HET: UMQ MAL PGV ANP; 2.20A {Escherichia coli} PDB: 1q1e_A 1q12_A* 2awo_A* 3fh6_A 3puv_A* 3puw_A* 3pux_A* 3puy_A* 3puz_A* 3pv0_A* 2awn_A* 2r6g_A* 1q1b_A
Probab=84.31 E-value=0.45 Score=49.14 Aligned_cols=25 Identities=24% Similarity=0.383 Sum_probs=21.5
Q ss_pred hcCCEEEEEcCCCCcHHHHHHHHHH
Q 006122 63 ETHATTIIVGETGSGKTTQIPQYLK 87 (660)
Q Consensus 63 ~~~~~vii~apTGsGKT~~ip~~l~ 87 (660)
..+..+.|.||+||||||++-.+.-
T Consensus 27 ~~Ge~~~llGpsGsGKSTLLr~iaG 51 (381)
T 3rlf_A 27 HEGEFVVFVGPSGCGKSTLLRMIAG 51 (381)
T ss_dssp CTTCEEEEECCTTSSHHHHHHHHHT
T ss_pred CCCCEEEEEcCCCchHHHHHHHHHc
Confidence 5688999999999999999876653
No 347
>1nn5_A Similar to deoxythymidylate kinase (thymidylate K; P-loop, D4TMP, transferase; HET: 2DT ANP; 1.50A {Homo sapiens} SCOP: c.37.1.1 PDB: 1e2e_A* 1e2d_A* 1e2g_A* 1e2q_A* 1e99_A* 1e9a_A* 1e9b_A* 1nmx_A* 1nmz_A* 1nn0_A* 1nn1_A* 1e2f_A* 1nn3_A* 2xx3_A* 1e9c_A* 1e9d_A* 1e9e_A* 1e98_A* 1nmy_A* 1e9f_A*
Probab=84.24 E-value=0.57 Score=43.81 Aligned_cols=26 Identities=23% Similarity=0.340 Sum_probs=21.4
Q ss_pred hcCCEEEEEcCCCCcHHHHHHHHHHh
Q 006122 63 ETHATTIIVGETGSGKTTQIPQYLKE 88 (660)
Q Consensus 63 ~~~~~vii~apTGsGKT~~ip~~l~~ 88 (660)
..+..++|.|+.||||||+.-.+...
T Consensus 7 ~~~~~I~l~G~~GsGKsT~~~~L~~~ 32 (215)
T 1nn5_A 7 RRGALIVLEGVDRAGKSTQSRKLVEA 32 (215)
T ss_dssp CCCCEEEEEESTTSSHHHHHHHHHHH
T ss_pred cCCcEEEEECCCCCCHHHHHHHHHHH
Confidence 35678999999999999998876554
No 348
>2i1q_A DNA repair and recombination protein RADA; ATPase, recombinase, ATP complex, calcium stimulation, RECA, DMC1; HET: DNA ANP; 1.90A {Methanococcus voltae} SCOP: a.60.4.1 c.37.1.11 PDB: 1xu4_A* 2b21_A* 2fpk_A* 2fpl_A* 2fpm_A* 1t4g_A* 3fyh_A* 2f1j_A* 2f1i_A* 2f1h_A* 3ntu_A* 3ewa_A* 3ew9_A* 3etl_A* 4dc9_A* 2gdj_A*
Probab=84.12 E-value=0.64 Score=46.91 Aligned_cols=28 Identities=32% Similarity=0.364 Sum_probs=23.4
Q ss_pred HhcCCEEEEEcCCCCcHHHHHHHHHHhc
Q 006122 62 VETHATTIIVGETGSGKTTQIPQYLKEA 89 (660)
Q Consensus 62 l~~~~~vii~apTGsGKT~~ip~~l~~~ 89 (660)
+..+..++|.|++|+|||+++-+++...
T Consensus 95 l~~g~i~~i~G~~gsGKT~la~~la~~~ 122 (322)
T 2i1q_A 95 LESQSVTEFAGVFGSGKTQIMHQSCVNL 122 (322)
T ss_dssp EETTEEEEEEESTTSSHHHHHHHHHHHT
T ss_pred ccCCeEEEEECCCCCCHHHHHHHHHHHH
Confidence 3457899999999999998888887753
No 349
>1u94_A RECA protein, recombinase A; homologous recombination, ATPase, DNA repair, DNA binding protein; 1.90A {Escherichia coli} SCOP: c.37.1.11 d.48.1.1 PDB: 1u98_A 1u99_A 1xms_A* 1xmv_A* 2rec_A 2reb_A 1n03_A* 1rea_A 1aa3_A
Probab=84.07 E-value=0.64 Score=47.62 Aligned_cols=41 Identities=24% Similarity=0.198 Sum_probs=30.9
Q ss_pred HhcCCEEEEEcCCCCcHHHHHHHHHHhccccCCCeEEEEeCc
Q 006122 62 VETHATTIIVGETGSGKTTQIPQYLKEAGWADGGRVIACTQP 103 (660)
Q Consensus 62 l~~~~~vii~apTGsGKT~~ip~~l~~~~~~~~~~~i~v~p~ 103 (660)
+..+.+++|.|++|+|||++.-+++..... .+.+++++.-.
T Consensus 60 l~~G~ii~I~G~pGsGKTtLal~la~~~~~-~g~~vlyid~E 100 (356)
T 1u94_A 60 LPMGRIVEIYGPESSGKTTLTLQVIAAAQR-EGKTCAFIDAE 100 (356)
T ss_dssp EETTSEEEEECSTTSSHHHHHHHHHHHHHH-TTCCEEEEESS
T ss_pred ccCCeEEEEECCCCCCHHHHHHHHHHHHHH-CCCeEEEEeCC
Confidence 446789999999999999888877766532 34567777653
No 350
>4e22_A Cytidylate kinase; P-loop, CMP/ATP binding, transferase; 2.32A {Yersinia pseudotuberculosis}
Probab=84.04 E-value=0.74 Score=44.62 Aligned_cols=27 Identities=19% Similarity=0.247 Sum_probs=22.0
Q ss_pred hcCCEEEEEcCCCCcHHHHHHHHHHhc
Q 006122 63 ETHATTIIVGETGSGKTTQIPQYLKEA 89 (660)
Q Consensus 63 ~~~~~vii~apTGsGKT~~ip~~l~~~ 89 (660)
..+..+.|.||+||||||++-.+....
T Consensus 25 ~~g~~I~I~G~~GsGKSTl~k~La~~L 51 (252)
T 4e22_A 25 AIAPVITVDGPSGAGKGTLCKALAESL 51 (252)
T ss_dssp TTSCEEEEECCTTSSHHHHHHHHHHHT
T ss_pred CCCcEEEEECCCCCCHHHHHHHHHHhc
Confidence 356789999999999999987766544
No 351
>1ukz_A Uridylate kinase; transferase; HET: ADP AMP; 1.90A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 1uky_A*
Probab=84.04 E-value=0.71 Score=42.85 Aligned_cols=24 Identities=29% Similarity=0.547 Sum_probs=19.7
Q ss_pred CEEEEEcCCCCcHHHHHHHHHHhc
Q 006122 66 ATTIIVGETGSGKTTQIPQYLKEA 89 (660)
Q Consensus 66 ~~vii~apTGsGKT~~ip~~l~~~ 89 (660)
..+++.|+.||||||+.-.+....
T Consensus 16 ~~I~l~G~~GsGKsT~~~~L~~~~ 39 (203)
T 1ukz_A 16 SVIFVLGGPGAGKGTQCEKLVKDY 39 (203)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHHS
T ss_pred cEEEEECCCCCCHHHHHHHHHHHc
Confidence 468999999999999987766544
No 352
>3nbx_X ATPase RAVA; AAA+ ATPase, alpha-beta-alpha structure, rossman fold, hydro; HET: ADP; 2.91A {Escherichia coli}
Probab=84.00 E-value=0.83 Score=49.08 Aligned_cols=34 Identities=12% Similarity=0.077 Sum_probs=26.4
Q ss_pred HHHHHHHHHhcCCEEEEEcCCCCcHHHHHHHHHH
Q 006122 54 YRTAILYLVETHATTIIVGETGSGKTTQIPQYLK 87 (660)
Q Consensus 54 ~~~~i~~~l~~~~~vii~apTGsGKT~~ip~~l~ 87 (660)
..+.+..++..+.++++.||+|+|||+++-.+..
T Consensus 30 ~i~~l~~al~~~~~VLL~GpPGtGKT~LAraLa~ 63 (500)
T 3nbx_X 30 AIRLCLLAALSGESVFLLGPPGIAKSLIARRLKF 63 (500)
T ss_dssp HHHHHHHHHHHTCEEEEECCSSSSHHHHHHHGGG
T ss_pred HHHHHHHHHhcCCeeEeecCchHHHHHHHHHHHH
Confidence 3456667778889999999999999977654443
No 353
>2yyz_A Sugar ABC transporter, ATP-binding protein; sugar transport, alpha and beta proteins (A/B) TM0421, structural genomics, NPPSFA; 2.11A {Thermotoga maritima}
Probab=83.91 E-value=0.47 Score=48.66 Aligned_cols=25 Identities=24% Similarity=0.371 Sum_probs=21.4
Q ss_pred hcCCEEEEEcCCCCcHHHHHHHHHH
Q 006122 63 ETHATTIIVGETGSGKTTQIPQYLK 87 (660)
Q Consensus 63 ~~~~~vii~apTGsGKT~~ip~~l~ 87 (660)
..+..+.|.||+||||||++-.+.-
T Consensus 27 ~~Ge~~~llGpnGsGKSTLLr~iaG 51 (359)
T 2yyz_A 27 KDGEFVALLGPSGCGKTTTLLMLAG 51 (359)
T ss_dssp CTTCEEEEECSTTSSHHHHHHHHHT
T ss_pred cCCCEEEEEcCCCchHHHHHHHHHC
Confidence 5688999999999999999876653
No 354
>3eph_A TRNA isopentenyltransferase; transferase, alternative initiation, ATP-binding, cytoplasm, mitochondrion, nucleotide-binding, nucleus; 2.95A {Saccharomyces cerevisiae} PDB: 3epj_A 3epk_A* 3epl_A*
Probab=83.76 E-value=0.58 Score=48.47 Aligned_cols=23 Identities=30% Similarity=0.440 Sum_probs=17.9
Q ss_pred CEEEEEcCCCCcHHHHHHHHHHh
Q 006122 66 ATTIIVGETGSGKTTQIPQYLKE 88 (660)
Q Consensus 66 ~~vii~apTGsGKT~~ip~~l~~ 88 (660)
..++|+||||||||++.-.+...
T Consensus 3 ~~i~i~GptgsGKttla~~La~~ 25 (409)
T 3eph_A 3 KVIVIAGTTGVGKSQLSIQLAQK 25 (409)
T ss_dssp EEEEEEECSSSSHHHHHHHHHHH
T ss_pred cEEEEECcchhhHHHHHHHHHHH
Confidence 46889999999999876655443
No 355
>2it1_A 362AA long hypothetical maltose/maltodextrin transport ATP-binding protein; structural genomics, NPPSFA; 1.94A {Pyrococcus horikoshii}
Probab=83.63 E-value=0.5 Score=48.53 Aligned_cols=25 Identities=24% Similarity=0.349 Sum_probs=21.3
Q ss_pred hcCCEEEEEcCCCCcHHHHHHHHHH
Q 006122 63 ETHATTIIVGETGSGKTTQIPQYLK 87 (660)
Q Consensus 63 ~~~~~vii~apTGsGKT~~ip~~l~ 87 (660)
..+..+.|.||+||||||++-.+.-
T Consensus 27 ~~Ge~~~llGpnGsGKSTLLr~iaG 51 (362)
T 2it1_A 27 KDGEFMALLGPSGSGKSTLLYTIAG 51 (362)
T ss_dssp CTTCEEEEECCTTSSHHHHHHHHHT
T ss_pred CCCCEEEEECCCCchHHHHHHHHhc
Confidence 5688999999999999999876653
No 356
>4fcw_A Chaperone protein CLPB; AAA domain; HET: ADP; 2.35A {Thermus thermophilus} PDB: 4fcv_A* 4fd2_A* 4fct_A*
Probab=83.63 E-value=0.86 Score=45.42 Aligned_cols=24 Identities=25% Similarity=0.361 Sum_probs=18.9
Q ss_pred CEEEEEcCCCCcHHHHHHHHHHhc
Q 006122 66 ATTIIVGETGSGKTTQIPQYLKEA 89 (660)
Q Consensus 66 ~~vii~apTGsGKT~~ip~~l~~~ 89 (660)
..+++.||+|+|||+++-.+....
T Consensus 48 ~~~ll~G~~GtGKt~la~~la~~~ 71 (311)
T 4fcw_A 48 GSFLFLGPTGVGKTELAKTLAATL 71 (311)
T ss_dssp EEEEEESCSSSSHHHHHHHHHHHH
T ss_pred eEEEEECCCCcCHHHHHHHHHHHH
Confidence 479999999999998776555443
No 357
>2wwf_A Thymidilate kinase, putative; transferase, malaria; HET: TMP ADP; 1.89A {Plasmodium falciparum} PDB: 2wwg_A* 2wwh_A* 2wwi_A*
Probab=83.59 E-value=0.67 Score=43.25 Aligned_cols=25 Identities=24% Similarity=0.209 Sum_probs=20.8
Q ss_pred cCCEEEEEcCCCCcHHHHHHHHHHh
Q 006122 64 THATTIIVGETGSGKTTQIPQYLKE 88 (660)
Q Consensus 64 ~~~~vii~apTGsGKT~~ip~~l~~ 88 (660)
.+..+++.|+.||||||+.-.+...
T Consensus 9 ~~~~I~l~G~~GsGKST~~~~L~~~ 33 (212)
T 2wwf_A 9 KGKFIVFEGLDRSGKSTQSKLLVEY 33 (212)
T ss_dssp CSCEEEEEESTTSSHHHHHHHHHHH
T ss_pred cCCEEEEEcCCCCCHHHHHHHHHHH
Confidence 4678999999999999998766544
No 358
>1m7g_A Adenylylsulfate kinase; APS kinase, transferase, sulfate Met nucleotide 2 kinase; HET: AV2 ADX ADP; 1.43A {Penicillium chrysogenum} SCOP: c.37.1.4 PDB: 1d6j_A* 1m7h_A* 3cr7_A*
Probab=83.45 E-value=0.75 Score=43.12 Aligned_cols=27 Identities=22% Similarity=0.229 Sum_probs=21.7
Q ss_pred HhcCCEEEEEcCCCCcHHHHHHHHHHh
Q 006122 62 VETHATTIIVGETGSGKTTQIPQYLKE 88 (660)
Q Consensus 62 l~~~~~vii~apTGsGKT~~ip~~l~~ 88 (660)
+..+..+++.|+.||||||+.-.+...
T Consensus 22 ~~~~~~i~~~G~~GsGKsT~~~~l~~~ 48 (211)
T 1m7g_A 22 NQRGLTIWLTGLSASGKSTLAVELEHQ 48 (211)
T ss_dssp TSSCEEEEEECSTTSSHHHHHHHHHHH
T ss_pred CCCCCEEEEECCCCCCHHHHHHHHHHH
Confidence 456778999999999999988765443
No 359
>2cdn_A Adenylate kinase; phosphoryl transfer, associative mechanism, ATP-binding, nucleotide biosynthesis, nucleotide-binding, transferase; HET: ADP; 1.9A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1p4s_A
Probab=83.41 E-value=0.82 Score=42.36 Aligned_cols=24 Identities=25% Similarity=0.462 Sum_probs=19.6
Q ss_pred CEEEEEcCCCCcHHHHHHHHHHhc
Q 006122 66 ATTIIVGETGSGKTTQIPQYLKEA 89 (660)
Q Consensus 66 ~~vii~apTGsGKT~~ip~~l~~~ 89 (660)
..+++.|+.||||||+.-.+....
T Consensus 21 ~~I~l~G~~GsGKST~a~~La~~l 44 (201)
T 2cdn_A 21 MRVLLLGPPGAGKGTQAVKLAEKL 44 (201)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHHh
Confidence 468999999999999987665544
No 360
>2z0h_A DTMP kinase, thymidylate kinase; ATP-binding, nucleotide biosynthesis, nucleotide-binding, transferase, structural genomics, NPPSFA; HET: ADP TYD; 2.10A {Thermotoga maritima} PDB: 3hjn_A*
Probab=83.28 E-value=0.67 Score=42.60 Aligned_cols=22 Identities=36% Similarity=0.376 Sum_probs=18.2
Q ss_pred EEEEEcCCCCcHHHHHHHHHHh
Q 006122 67 TTIIVGETGSGKTTQIPQYLKE 88 (660)
Q Consensus 67 ~vii~apTGsGKT~~ip~~l~~ 88 (660)
.+++.|+.||||||+.-.+...
T Consensus 2 ~I~l~G~~GsGKsT~~~~L~~~ 23 (197)
T 2z0h_A 2 FITFEGIDGSGKSTQIQLLAQY 23 (197)
T ss_dssp EEEEECSTTSSHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHH
Confidence 4789999999999998766544
No 361
>3gd7_A Fusion complex of cystic fibrosis transmembrane conductance regulator, residues 1193-1427...; CFTR, ABC transporter, nucleotide binding domain, NBD; HET: B44; 2.70A {Homo sapiens}
Probab=83.18 E-value=0.5 Score=49.06 Aligned_cols=26 Identities=31% Similarity=0.603 Sum_probs=22.0
Q ss_pred HhcCCEEEEEcCCCCcHHHHHHHHHH
Q 006122 62 VETHATTIIVGETGSGKTTQIPQYLK 87 (660)
Q Consensus 62 l~~~~~vii~apTGsGKT~~ip~~l~ 87 (660)
+..+..+.|.||+||||||++-.+.-
T Consensus 44 i~~Ge~~~llGpsGsGKSTLLr~iaG 69 (390)
T 3gd7_A 44 ISPGQRVGLLGRTGSGKSTLLSAFLR 69 (390)
T ss_dssp ECTTCEEEEEESTTSSHHHHHHHHHT
T ss_pred EcCCCEEEEECCCCChHHHHHHHHhC
Confidence 35789999999999999999876653
No 362
>1gtv_A TMK, thymidylate kinase; transferase, transferase (ATP:TMP phosphotransferase); HET: TYD TMP; 1.55A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1g3u_A* 1gsi_A* 1mrn_A* 1mrs_A* 1n5i_A* 1n5j_A* 1n5k_A* 1n5l_A* 1w2g_A* 1w2h_A*
Probab=83.12 E-value=0.41 Score=44.82 Aligned_cols=23 Identities=26% Similarity=0.304 Sum_probs=19.1
Q ss_pred EEEEEcCCCCcHHHHHHHHHHhc
Q 006122 67 TTIIVGETGSGKTTQIPQYLKEA 89 (660)
Q Consensus 67 ~vii~apTGsGKT~~ip~~l~~~ 89 (660)
.++|.|+.||||||++-.+....
T Consensus 2 ~I~i~G~~GsGKsTl~~~L~~~l 24 (214)
T 1gtv_A 2 LIAIEGVDGAGKRTLVEKLSGAF 24 (214)
T ss_dssp EEEEEEEEEEEHHHHHHHHHHHH
T ss_pred EEEEEcCCCCCHHHHHHHHHHHH
Confidence 57899999999999988766543
No 363
>1v43_A Sugar-binding transport ATP-binding protein; ATPase, active transport, sugar uptake and regulation, transport protein; 2.20A {Pyrococcus horikoshii} SCOP: b.40.6.3 b.40.6.3 c.37.1.12 PDB: 1vci_A*
Probab=83.11 E-value=0.53 Score=48.48 Aligned_cols=25 Identities=24% Similarity=0.414 Sum_probs=21.4
Q ss_pred hcCCEEEEEcCCCCcHHHHHHHHHH
Q 006122 63 ETHATTIIVGETGSGKTTQIPQYLK 87 (660)
Q Consensus 63 ~~~~~vii~apTGsGKT~~ip~~l~ 87 (660)
..+..+.|.||+||||||++-.+.-
T Consensus 35 ~~Ge~~~llGpnGsGKSTLLr~iaG 59 (372)
T 1v43_A 35 KDGEFLVLLGPSGCGKTTTLRMIAG 59 (372)
T ss_dssp CTTCEEEEECCTTSSHHHHHHHHHT
T ss_pred CCCCEEEEECCCCChHHHHHHHHHc
Confidence 5788999999999999999876653
No 364
>3d31_A Sulfate/molybdate ABC transporter, ATP-binding protein; ATP-binding, nucleotide-binding, membrane, transmembrane, transport protein; 3.00A {Methanosarcina acetivorans} SCOP: b.40.6.3 c.37.1.12
Probab=83.09 E-value=0.44 Score=48.66 Aligned_cols=25 Identities=32% Similarity=0.413 Sum_probs=21.3
Q ss_pred hcCCEEEEEcCCCCcHHHHHHHHHH
Q 006122 63 ETHATTIIVGETGSGKTTQIPQYLK 87 (660)
Q Consensus 63 ~~~~~vii~apTGsGKT~~ip~~l~ 87 (660)
..+..+.|.||+||||||++-.+.-
T Consensus 24 ~~Ge~~~llGpnGsGKSTLLr~iaG 48 (348)
T 3d31_A 24 ESGEYFVILGPTGAGKTLFLELIAG 48 (348)
T ss_dssp CTTCEEEEECCCTHHHHHHHHHHHT
T ss_pred cCCCEEEEECCCCccHHHHHHHHHc
Confidence 5688999999999999999876653
No 365
>1qf9_A UMP/CMP kinase, protein (uridylmonophosphate/cytidylmonophosphate kinase); nucleoside monophosphate kinase, NMP kinase; HET: ADP C5P; 1.70A {Dictyostelium discoideum} SCOP: c.37.1.1 PDB: 1uke_A* 2ukd_A* 3ukd_A* 4ukd_A* 5ukd_A*
Probab=83.07 E-value=0.74 Score=42.09 Aligned_cols=24 Identities=29% Similarity=0.533 Sum_probs=19.4
Q ss_pred CEEEEEcCCCCcHHHHHHHHHHhc
Q 006122 66 ATTIIVGETGSGKTTQIPQYLKEA 89 (660)
Q Consensus 66 ~~vii~apTGsGKT~~ip~~l~~~ 89 (660)
..+++.|+.||||||+.-.+....
T Consensus 7 ~~I~l~G~~GsGKsT~~~~L~~~l 30 (194)
T 1qf9_A 7 NVVFVLGGPGSGKGTQCANIVRDF 30 (194)
T ss_dssp EEEEEEESTTSSHHHHHHHHHHHH
T ss_pred cEEEEECCCCCCHHHHHHHHHHHh
Confidence 468999999999999887665443
No 366
>1e6c_A Shikimate kinase; phosphoryl transfer, ADP, shikimate pathway, P-loop protein, transferase; 1.8A {Erwinia chrysanthemi} SCOP: c.37.1.2 PDB: 1shk_A 2shk_A*
Probab=83.04 E-value=0.75 Score=41.28 Aligned_cols=24 Identities=25% Similarity=0.346 Sum_probs=19.3
Q ss_pred CEEEEEcCCCCcHHHHHHHHHHhc
Q 006122 66 ATTIIVGETGSGKTTQIPQYLKEA 89 (660)
Q Consensus 66 ~~vii~apTGsGKT~~ip~~l~~~ 89 (660)
..+++.|+.||||||+.-.+....
T Consensus 3 ~~I~l~G~~GsGKsT~a~~La~~l 26 (173)
T 1e6c_A 3 EPIFMVGARGCGMTTVGRELARAL 26 (173)
T ss_dssp CCEEEESCTTSSHHHHHHHHHHHH
T ss_pred ceEEEECCCCCCHHHHHHHHHHHh
Confidence 358999999999999887665443
No 367
>2pjz_A Hypothetical protein ST1066; ATP binding protein, structural genomics, NPPSFA; 1.90A {Sulfolobus tokodaii}
Probab=83.02 E-value=0.51 Score=46.14 Aligned_cols=24 Identities=42% Similarity=0.560 Sum_probs=20.4
Q ss_pred HhcCCEEEEEcCCCCcHHHHHHHHH
Q 006122 62 VETHATTIIVGETGSGKTTQIPQYL 86 (660)
Q Consensus 62 l~~~~~vii~apTGsGKT~~ip~~l 86 (660)
+. ++.+.|.||+||||||++-.+.
T Consensus 28 i~-Ge~~~i~G~NGsGKSTLlk~l~ 51 (263)
T 2pjz_A 28 VN-GEKVIILGPNGSGKTTLLRAIS 51 (263)
T ss_dssp EC-SSEEEEECCTTSSHHHHHHHHT
T ss_pred EC-CEEEEEECCCCCCHHHHHHHHh
Confidence 35 7889999999999999987654
No 368
>1tq4_A IIGP1, interferon-inducible GTPase; interferon gamma, dimer, immunology, signaling protein; HET: GDP; 1.95A {Mus musculus} SCOP: c.37.1.8 PDB: 1tqd_A* 1tq6_A* 1tpz_A* 1tq2_A*
Probab=82.98 E-value=1 Score=46.99 Aligned_cols=25 Identities=32% Similarity=0.438 Sum_probs=20.2
Q ss_pred hcCCEEEEEcCCCCcHHHHHHHHHH
Q 006122 63 ETHATTIIVGETGSGKTTQIPQYLK 87 (660)
Q Consensus 63 ~~~~~vii~apTGsGKT~~ip~~l~ 87 (660)
.....+.+.||+|+||||++-.+.-
T Consensus 67 ~~~~~valvG~nGaGKSTLln~L~G 91 (413)
T 1tq4_A 67 SSVLNVAVTGETGSGKSSFINTLRG 91 (413)
T ss_dssp HCCEEEEEEECTTSSHHHHHHHHHT
T ss_pred cCCeEEEEECCCCCcHHHHHHHHhC
Confidence 3344899999999999999987654
No 369
>3cf2_A TER ATPase, transitional endoplasmic reticulum ATPase, valosi; AAA, CDC48, ERAD, transport protein; HET: ADP ANP; 3.50A {Mus musculus} PDB: 3cf1_A* 3cf3_A* 1r7r_A*
Probab=82.93 E-value=1.1 Score=51.01 Aligned_cols=25 Identities=24% Similarity=0.331 Sum_probs=19.1
Q ss_pred CCEEEEEcCCCCcHHHHHHHHHHhc
Q 006122 65 HATTIIVGETGSGKTTQIPQYLKEA 89 (660)
Q Consensus 65 ~~~vii~apTGsGKT~~ip~~l~~~ 89 (660)
.+-+++.||+|+|||.++-.+..+.
T Consensus 511 ~~gvLl~GPPGtGKT~lAkaiA~e~ 535 (806)
T 3cf2_A 511 SKGVLFYGPPGCGKTLLAKAIANEC 535 (806)
T ss_dssp CSCCEEESSTTSSHHHHHHHHHHTT
T ss_pred CceEEEecCCCCCchHHHHHHHHHh
Confidence 3458999999999997666555554
No 370
>2vp4_A Deoxynucleoside kinase; ATP-binding, DNA synthesis, phosphoprotein, feedback inhibition, deoxyribonucleoside kinase, salvage pathway; HET: DCP; 2.20A {Drosophila melanogaster} SCOP: c.37.1.1 PDB: 1j90_A* 2jj8_A* 2vp2_A* 1oe0_A* 2vp5_A* 2vp6_A* 2vp9_A* 2vpp_A* 2vqs_A* 2vp0_A* 1ot3_A* 2jcs_A* 1zm7_A* 1zmx_A*
Probab=82.89 E-value=0.53 Score=44.92 Aligned_cols=23 Identities=39% Similarity=0.554 Sum_probs=19.2
Q ss_pred cCCEEEEEcCCCCcHHHHHHHHH
Q 006122 64 THATTIIVGETGSGKTTQIPQYL 86 (660)
Q Consensus 64 ~~~~vii~apTGsGKT~~ip~~l 86 (660)
.+..+.|.|+.||||||++-.+.
T Consensus 19 ~g~~i~i~G~~GsGKSTl~~~L~ 41 (230)
T 2vp4_A 19 QPFTVLIEGNIGSGKTTYLNHFE 41 (230)
T ss_dssp CCEEEEEECSTTSCHHHHHHTTG
T ss_pred CceEEEEECCCCCCHHHHHHHHH
Confidence 56789999999999999887543
No 371
>1c4o_A DNA nucleotide excision repair enzyme UVRB; uvrabc, helicase, hypertherm protein, replication; HET: DNA BOG; 1.50A {Thermus thermophilus} SCOP: c.37.1.19 c.37.1.19 PDB: 1d2m_A*
Probab=82.82 E-value=2.5 Score=47.28 Aligned_cols=58 Identities=21% Similarity=0.329 Sum_probs=39.6
Q ss_pred HHHHHhcCC-EEEEEcCCCCcHHHHHHHHHHhccccCCCeEEEEeCchHHHHHHHHHHHHHHhC
Q 006122 58 ILYLVETHA-TTIIVGETGSGKTTQIPQYLKEAGWADGGRVIACTQPRRLAVQAVASRVAEEMG 120 (660)
Q Consensus 58 i~~~l~~~~-~vii~apTGsGKT~~ip~~l~~~~~~~~~~~i~v~p~r~la~~~~~~~~~~~~~ 120 (660)
+.+.+..+. ..++.|.||||||+.+..++... +.++++++|...+|++- +..+...++
T Consensus 20 l~~~~~~~~~~~~l~g~tgs~kt~~~a~~~~~~----~~~~lvv~~~~~~A~ql-~~el~~~~~ 78 (664)
T 1c4o_A 20 LVEALRDGERFVTLLGATGTGKTVTMAKVIEAL----GRPALVLAPNKILAAQL-AAEFRELFP 78 (664)
T ss_dssp HHHHHHTTCSEEEEEECTTSCHHHHHHHHHHHH----TCCEEEEESSHHHHHHH-HHHHHHHCT
T ss_pred HHHHHhcCCCcEEEEcCCCcHHHHHHHHHHHHh----CCCEEEEecCHHHHHHH-HHHHHHHCC
Confidence 445555553 56788999999998777665443 23589999998887764 444555543
No 372
>1g29_1 MALK, maltose transport protein MALK; ATPase, active transport, maltose uptake and regulation, sugar binding protein; 1.90A {Thermococcus litoralis} SCOP: b.40.6.3 b.40.6.3 c.37.1.12 PDB: 2d62_A
Probab=82.79 E-value=0.54 Score=48.50 Aligned_cols=25 Identities=28% Similarity=0.436 Sum_probs=21.3
Q ss_pred hcCCEEEEEcCCCCcHHHHHHHHHH
Q 006122 63 ETHATTIIVGETGSGKTTQIPQYLK 87 (660)
Q Consensus 63 ~~~~~vii~apTGsGKT~~ip~~l~ 87 (660)
..+..+.|.||+||||||++-.+.-
T Consensus 27 ~~Ge~~~llGpnGsGKSTLLr~iaG 51 (372)
T 1g29_1 27 KDGEFMILLGPSGCGKTTTLRMIAG 51 (372)
T ss_dssp ETTCEEEEECSTTSSHHHHHHHHHT
T ss_pred cCCCEEEEECCCCcHHHHHHHHHHc
Confidence 5788999999999999999876653
No 373
>3qf7_A RAD50; ABC-ATPase, ATPase, hydrolase; HET: ANP; 1.90A {Thermotoga maritima} PDB: 3qg5_A 3tho_A*
Probab=82.77 E-value=0.71 Score=47.55 Aligned_cols=20 Identities=25% Similarity=0.488 Sum_probs=17.1
Q ss_pred EEEEEcCCCCcHHHHHHHHH
Q 006122 67 TTIIVGETGSGKTTQIPQYL 86 (660)
Q Consensus 67 ~vii~apTGsGKT~~ip~~l 86 (660)
..+|+|||||||||++-.+.
T Consensus 25 ~~~i~G~NGaGKTTll~ai~ 44 (365)
T 3qf7_A 25 ITVVEGPNGAGKSSLFEAIS 44 (365)
T ss_dssp EEEEECCTTSSHHHHHHHHH
T ss_pred eEEEECCCCCCHHHHHHHHH
Confidence 68899999999999886554
No 374
>3tui_C Methionine import ATP-binding protein METN; ABC-transporter, type I ABC type importer, methionine uptake transporter, membrane protein; HET: ADP; 2.90A {Escherichia coli} PDB: 3tuj_C 3tuz_C* 3dhw_C
Probab=82.71 E-value=0.57 Score=48.02 Aligned_cols=26 Identities=27% Similarity=0.304 Sum_probs=21.8
Q ss_pred HhcCCEEEEEcCCCCcHHHHHHHHHH
Q 006122 62 VETHATTIIVGETGSGKTTQIPQYLK 87 (660)
Q Consensus 62 l~~~~~vii~apTGsGKT~~ip~~l~ 87 (660)
+..+..+.|.||+||||||++-.+..
T Consensus 51 i~~Gei~~IiGpnGaGKSTLlr~i~G 76 (366)
T 3tui_C 51 VPAGQIYGVIGASGAGKSTLIRCVNL 76 (366)
T ss_dssp ECTTCEEEEECCTTSSHHHHHHHHHT
T ss_pred EcCCCEEEEEcCCCchHHHHHHHHhc
Confidence 35789999999999999999876554
No 375
>1e4v_A Adenylate kinase; transferase(phosphotransferase); HET: AP5; 1.85A {Escherichia coli} SCOP: c.37.1.1 g.41.2.1 PDB: 1e4y_A* 1ake_A* 1ank_A* 2eck_A* 3hpq_A* 4ake_A 3hpr_A*
Probab=82.65 E-value=0.77 Score=43.11 Aligned_cols=23 Identities=26% Similarity=0.362 Sum_probs=18.9
Q ss_pred EEEEEcCCCCcHHHHHHHHHHhc
Q 006122 67 TTIIVGETGSGKTTQIPQYLKEA 89 (660)
Q Consensus 67 ~vii~apTGsGKT~~ip~~l~~~ 89 (660)
.+++.|+.||||||+.-.+....
T Consensus 2 ~I~l~G~~GsGKsT~a~~L~~~~ 24 (214)
T 1e4v_A 2 RIILLGAPVAGKGTQAQFIMEKY 24 (214)
T ss_dssp EEEEEESTTSSHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHh
Confidence 47899999999999988766544
No 376
>3cr8_A Sulfate adenylyltranferase, adenylylsulfate kinase; APS kinase, transferase, sulfate metabolism, nucleotide 2 kinase; 2.95A {Thiobacillus denitrificans}
Probab=82.45 E-value=0.9 Score=49.46 Aligned_cols=58 Identities=16% Similarity=0.179 Sum_probs=35.9
Q ss_pred CCCCccchHhHHHHhcCCCcHHHHHHHHH--------HHhcCCEEEEEcCCCCcHHHHHHHHHHhc
Q 006122 32 ASSIGYGYASIEKQRQRLPVYKYRTAILY--------LVETHATTIIVGETGSGKTTQIPQYLKEA 89 (660)
Q Consensus 32 ~~~~~~~~~~~~~~~~~lPi~~~~~~i~~--------~l~~~~~vii~apTGsGKT~~ip~~l~~~ 89 (660)
..+|+...+.+.+.....|.+....++.. .+..+.++++.|+.||||||++-.+....
T Consensus 328 ~~isgt~ir~~Lr~G~~~p~~f~~peV~~vLR~~~~~~~~~G~iI~LiG~sGSGKSTLar~La~~L 393 (552)
T 3cr8_A 328 LTLSGEEFQRRMRAGLKIPEWYSFPEVLAELHRQTPPRERQGFTVFFTGLSGAGKSTLARALAARL 393 (552)
T ss_dssp ECCCHHHHHHHHTTTCCCCTTTSCHHHHHHHHHHSCCGGGSCEEEEEEESSCHHHHHHHHHHHHHH
T ss_pred ccCCHHHHHHHHhcCCCCCccccccchhhhhhhhcccccccceEEEEECCCCChHHHHHHHHHHhh
Confidence 34555555666665555553322222322 23467889999999999998877655443
No 377
>3nwj_A ATSK2; P loop, shikimate, nucleoside monophosphate kinase, shikimat ATP binding, chloroplast, transferase; 2.35A {Arabidopsis thaliana}
Probab=82.42 E-value=0.85 Score=44.18 Aligned_cols=25 Identities=32% Similarity=0.319 Sum_probs=21.2
Q ss_pred CCEEEEEcCCCCcHHHHHHHHHHhc
Q 006122 65 HATTIIVGETGSGKTTQIPQYLKEA 89 (660)
Q Consensus 65 ~~~vii~apTGsGKT~~ip~~l~~~ 89 (660)
+..++|.|+.||||||+.-.+....
T Consensus 48 g~~i~l~G~~GsGKSTl~~~La~~l 72 (250)
T 3nwj_A 48 GRSMYLVGMMGSGKTTVGKIMARSL 72 (250)
T ss_dssp TCCEEEECSTTSCHHHHHHHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHHHhc
Confidence 8899999999999999887665544
No 378
>2vli_A Antibiotic resistance protein; transferase, tunicamycin, phosphotransferase; 1.95A {Deinococcus radiodurans}
Probab=82.40 E-value=0.69 Score=41.98 Aligned_cols=25 Identities=24% Similarity=0.228 Sum_probs=16.4
Q ss_pred CCEEEEEcCCCCcHHHHHHHHHHhc
Q 006122 65 HATTIIVGETGSGKTTQIPQYLKEA 89 (660)
Q Consensus 65 ~~~vii~apTGsGKT~~ip~~l~~~ 89 (660)
...+++.|+.||||||+.-.+....
T Consensus 5 ~~~I~l~G~~GsGKST~a~~La~~l 29 (183)
T 2vli_A 5 SPIIWINGPFGVGKTHTAHTLHERL 29 (183)
T ss_dssp CCEEEEECCC----CHHHHHHHHHS
T ss_pred CeEEEEECCCCCCHHHHHHHHHHhc
Confidence 5679999999999999987765443
No 379
>1via_A Shikimate kinase; structural genomics, transferase; HET: MSE; 1.57A {Campylobacter jejuni} SCOP: c.37.1.2
Probab=82.34 E-value=0.83 Score=41.25 Aligned_cols=23 Identities=30% Similarity=0.462 Sum_probs=18.8
Q ss_pred EEEEEcCCCCcHHHHHHHHHHhc
Q 006122 67 TTIIVGETGSGKTTQIPQYLKEA 89 (660)
Q Consensus 67 ~vii~apTGsGKT~~ip~~l~~~ 89 (660)
.++|.|+.||||||+.-.+....
T Consensus 6 ~i~i~G~~GsGKsTla~~La~~l 28 (175)
T 1via_A 6 NIVFIGFMGSGKSTLARALAKDL 28 (175)
T ss_dssp CEEEECCTTSCHHHHHHHHHHHH
T ss_pred EEEEEcCCCCCHHHHHHHHHHHc
Confidence 58999999999999887665543
No 380
>2xb4_A Adenylate kinase; ATP-binding, nucleotide-binding, transferase; HET: SRT; 1.80A {Desulfovibrio gigas} PDB: 3l0s_A* 3l0p_A*
Probab=82.24 E-value=0.86 Score=43.18 Aligned_cols=23 Identities=35% Similarity=0.369 Sum_probs=19.0
Q ss_pred EEEEEcCCCCcHHHHHHHHHHhc
Q 006122 67 TTIIVGETGSGKTTQIPQYLKEA 89 (660)
Q Consensus 67 ~vii~apTGsGKT~~ip~~l~~~ 89 (660)
.+++.|+.||||||+.-.+....
T Consensus 2 ~I~l~G~~GsGKsT~a~~La~~l 24 (223)
T 2xb4_A 2 NILIFGPNGSGKGTQGNLVKDKY 24 (223)
T ss_dssp EEEEECCTTSCHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHh
Confidence 47899999999999988765544
No 381
>3io5_A Recombination and repair protein; storage dimer, inactive conformation, RECA like core domain, binding, DNA damage, DNA recombination; 2.40A {Enterobacteria phage T4}
Probab=82.20 E-value=1 Score=45.10 Aligned_cols=42 Identities=10% Similarity=-0.043 Sum_probs=31.8
Q ss_pred cCCEEEEEcCCCCcHHHHHHHHHHhcccc-CCCeEEEEeCchHH
Q 006122 64 THATTIIVGETGSGKTTQIPQYLKEAGWA-DGGRVIACTQPRRL 106 (660)
Q Consensus 64 ~~~~vii~apTGsGKT~~ip~~l~~~~~~-~~~~~i~v~p~r~l 106 (660)
.+ .+.|.||+|+|||++.-+++...... .+.+++++..+..+
T Consensus 28 ~G-iteI~G~pGsGKTtL~Lq~~~~~~~~g~g~~vlyId~E~s~ 70 (333)
T 3io5_A 28 SG-LLILAGPSKSFKSNFGLTMVSSYMRQYPDAVCLFYDSEFGI 70 (333)
T ss_dssp SE-EEEEEESSSSSHHHHHHHHHHHHHHHCTTCEEEEEESSCCC
T ss_pred CC-eEEEECCCCCCHHHHHHHHHHHHHhcCCCceEEEEeccchh
Confidence 35 78999999999999888887765432 25678888776544
No 382
>2pbr_A DTMP kinase, thymidylate kinase; transferase, nucleotide biosynthesis, TMP-binding, A binding, structural genomics, NPPSFA; 1.96A {Aquifex aeolicus}
Probab=82.19 E-value=0.79 Score=41.96 Aligned_cols=22 Identities=36% Similarity=0.383 Sum_probs=18.2
Q ss_pred EEEEEcCCCCcHHHHHHHHHHh
Q 006122 67 TTIIVGETGSGKTTQIPQYLKE 88 (660)
Q Consensus 67 ~vii~apTGsGKT~~ip~~l~~ 88 (660)
.+++.|+.||||||+.-.+...
T Consensus 2 ~I~l~G~~GsGKsT~~~~L~~~ 23 (195)
T 2pbr_A 2 LIAFEGIDGSGKTTQAKKLYEY 23 (195)
T ss_dssp EEEEECSTTSCHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHH
Confidence 5789999999999998766543
No 383
>2iyv_A Shikimate kinase, SK; transferase, aromatic amino acid biosynthesis, P-loop kinase, metal- binding, shikimate pathway; HET: ADP; 1.35A {Mycobacterium tuberculosis} SCOP: c.37.1.2 PDB: 2iyr_A* 2iyq_A* 2iyt_A 2iyu_A* 2iys_A* 2iyw_A* 2iyx_A* 2iyy_A* 2iyz_A* 2g1k_A* 1l4y_A* 1u8a_A* 1we2_A* 1zyu_A* 2dfn_A* 2dft_A* 2g1j_A 1l4u_A* 3baf_A*
Probab=82.16 E-value=0.83 Score=41.57 Aligned_cols=24 Identities=33% Similarity=0.443 Sum_probs=19.2
Q ss_pred CEEEEEcCCCCcHHHHHHHHHHhc
Q 006122 66 ATTIIVGETGSGKTTQIPQYLKEA 89 (660)
Q Consensus 66 ~~vii~apTGsGKT~~ip~~l~~~ 89 (660)
..++|.|+.||||||+.-.+....
T Consensus 3 ~~I~l~G~~GsGKsT~a~~La~~l 26 (184)
T 2iyv_A 3 PKAVLVGLPGSGKSTIGRRLAKAL 26 (184)
T ss_dssp CSEEEECSTTSSHHHHHHHHHHHH
T ss_pred CeEEEECCCCCCHHHHHHHHHHHc
Confidence 458999999999999887665543
No 384
>1sq5_A Pantothenate kinase; P-loop, transferase; HET: PAU ADP; 2.20A {Escherichia coli} SCOP: c.37.1.6 PDB: 1esm_A* 1esn_A*
Probab=81.95 E-value=2 Score=42.99 Aligned_cols=26 Identities=19% Similarity=0.127 Sum_probs=20.7
Q ss_pred hcCCEEEEEcCCCCcHHHHHHHHHHh
Q 006122 63 ETHATTIIVGETGSGKTTQIPQYLKE 88 (660)
Q Consensus 63 ~~~~~vii~apTGsGKT~~ip~~l~~ 88 (660)
..+..+.|.||+||||||++-.+...
T Consensus 78 ~~g~iigI~G~~GsGKSTl~~~L~~~ 103 (308)
T 1sq5_A 78 RIPYIISIAGSVAVGKSTTARVLQAL 103 (308)
T ss_dssp CCCEEEEEEECTTSSHHHHHHHHHHH
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHHH
Confidence 44568899999999999988766543
No 385
>1ak2_A Adenylate kinase isoenzyme-2; nucleoside monophosphate kinase, phosphotransferase; 1.92A {Bos taurus} SCOP: c.37.1.1 g.41.2.1 PDB: 2ak2_A 2c9y_A*
Probab=81.85 E-value=1 Score=43.00 Aligned_cols=25 Identities=32% Similarity=0.581 Sum_probs=20.7
Q ss_pred CCEEEEEcCCCCcHHHHHHHHHHhc
Q 006122 65 HATTIIVGETGSGKTTQIPQYLKEA 89 (660)
Q Consensus 65 ~~~vii~apTGsGKT~~ip~~l~~~ 89 (660)
...+++.|++||||||+.-.+....
T Consensus 16 ~~~I~l~G~~GsGKsT~a~~La~~l 40 (233)
T 1ak2_A 16 GVRAVLLGPPGAGKGTQAPKLAKNF 40 (233)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHh
Confidence 4579999999999999988776554
No 386
>1ny5_A Transcriptional regulator (NTRC family); AAA+ ATPase, sigma54 activator, bacterial transcription, DIM transcription; HET: ADP; 2.40A {Aquifex aeolicus} SCOP: c.23.1.1 c.37.1.20 PDB: 1ny6_A* 3m0e_A* 1zy2_A*
Probab=81.85 E-value=3.7 Score=42.49 Aligned_cols=37 Identities=19% Similarity=0.285 Sum_probs=22.6
Q ss_pred hcCCEEEEEcCCCCcHHHHHHHHHHhccccCCCeEEEE
Q 006122 63 ETHATTIIVGETGSGKTTQIPQYLKEAGWADGGRVIAC 100 (660)
Q Consensus 63 ~~~~~vii~apTGsGKT~~ip~~l~~~~~~~~~~~i~v 100 (660)
..+-.+++.|++|+|||++. ..+........++.+.+
T Consensus 158 ~~~~~vli~Ge~GtGK~~lA-r~ih~~s~r~~~~fv~v 194 (387)
T 1ny5_A 158 CAECPVLITGESGVGKEVVA-RLIHKLSDRSKEPFVAL 194 (387)
T ss_dssp TCCSCEEEECSTTSSHHHHH-HHHHHHSTTTTSCEEEE
T ss_pred CCCCCeEEecCCCcCHHHHH-HHHHHhcCCCCCCeEEE
Confidence 34556899999999999654 44444433333344433
No 387
>1ixz_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 2.20A {Thermus thermophilus} SCOP: c.37.1.20 PDB: 1iy0_A* 1iy1_A*
Probab=81.83 E-value=0.82 Score=44.18 Aligned_cols=24 Identities=33% Similarity=0.423 Sum_probs=19.3
Q ss_pred CEEEEEcCCCCcHHHHHHHHHHhc
Q 006122 66 ATTIIVGETGSGKTTQIPQYLKEA 89 (660)
Q Consensus 66 ~~vii~apTGsGKT~~ip~~l~~~ 89 (660)
+.+++.||+|+|||+++-.+....
T Consensus 50 ~g~ll~G~~G~GKTtl~~~i~~~~ 73 (254)
T 1ixz_A 50 KGVLLVGPPGVGKTHLARAVAGEA 73 (254)
T ss_dssp SEEEEECCTTSSHHHHHHHHHHHT
T ss_pred CeEEEECCCCCCHHHHHHHHHHHh
Confidence 348999999999998887665544
No 388
>3a4m_A L-seryl-tRNA(SEC) kinase; P-loop motif, walker A motif, ATP binding motif, ATP- binding, nucleotide-binding, transferase; HET: ADP; 1.79A {Methanocaldococcus jannaschii} PDB: 3a4l_A* 3a4n_A 3am1_A* 3add_A* 3adc_A* 3adb_A*
Probab=81.80 E-value=0.77 Score=44.74 Aligned_cols=24 Identities=29% Similarity=0.284 Sum_probs=19.4
Q ss_pred CCEEEEEcCCCCcHHHHHHHHHHh
Q 006122 65 HATTIIVGETGSGKTTQIPQYLKE 88 (660)
Q Consensus 65 ~~~vii~apTGsGKT~~ip~~l~~ 88 (660)
...++++|+.||||||+.-.+...
T Consensus 4 ~~lIvl~G~pGSGKSTla~~La~~ 27 (260)
T 3a4m_A 4 IMLIILTGLPGVGKSTFSKNLAKI 27 (260)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHHH
T ss_pred CEEEEEEcCCCCCHHHHHHHHHHH
Confidence 457899999999999988766543
No 389
>1tue_A Replication protein E1; helicase, replication, E1E2 complex, AAA+ protein; 2.10A {Human papillomavirus type 18} SCOP: c.37.1.20
Probab=81.80 E-value=0.77 Score=42.80 Aligned_cols=22 Identities=14% Similarity=0.292 Sum_probs=17.4
Q ss_pred CEEEEEcCCCCcHHHHHHHHHH
Q 006122 66 ATTIIVGETGSGKTTQIPQYLK 87 (660)
Q Consensus 66 ~~vii~apTGsGKT~~ip~~l~ 87 (660)
+.+++.||.|+|||+.+-.++.
T Consensus 59 n~ili~GPPGtGKTt~a~ala~ 80 (212)
T 1tue_A 59 NCLVFCGPANTGKSYFGMSFIH 80 (212)
T ss_dssp SEEEEESCGGGCHHHHHHHHHH
T ss_pred cEEEEECCCCCCHHHHHHHHHH
Confidence 4799999999999977654433
No 390
>1jjv_A Dephospho-COA kinase; P-loop nucleotide-binding fold, structure 2 function project, S2F, structural genomics, transferase; HET: ATP; 2.00A {Haemophilus influenzae} SCOP: c.37.1.1
Probab=81.79 E-value=0.83 Score=42.51 Aligned_cols=20 Identities=35% Similarity=0.419 Sum_probs=17.0
Q ss_pred EEEEEcCCCCcHHHHHHHHH
Q 006122 67 TTIIVGETGSGKTTQIPQYL 86 (660)
Q Consensus 67 ~vii~apTGsGKT~~ip~~l 86 (660)
++.|.|+.||||||+.-.+.
T Consensus 4 ~i~l~G~~GsGKST~~~~La 23 (206)
T 1jjv_A 4 IVGLTGGIGSGKTTIANLFT 23 (206)
T ss_dssp EEEEECSTTSCHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHH
Confidence 57899999999999887664
No 391
>2pt5_A Shikimate kinase, SK; aromatic amino acid biosynthesis, P-loop kinase, SHI kinase, shikimate pathway; 2.10A {Aquifex aeolicus}
Probab=81.77 E-value=0.87 Score=40.63 Aligned_cols=23 Identities=22% Similarity=0.189 Sum_probs=18.6
Q ss_pred EEEEEcCCCCcHHHHHHHHHHhc
Q 006122 67 TTIIVGETGSGKTTQIPQYLKEA 89 (660)
Q Consensus 67 ~vii~apTGsGKT~~ip~~l~~~ 89 (660)
.+++.|+.||||||+.-.+....
T Consensus 2 ~I~l~G~~GsGKsT~a~~L~~~l 24 (168)
T 2pt5_A 2 RIYLIGFMCSGKSTVGSLLSRSL 24 (168)
T ss_dssp EEEEESCTTSCHHHHHHHHHHHH
T ss_pred eEEEECCCCCCHHHHHHHHHHHh
Confidence 47899999999999887665443
No 392
>4tmk_A Protein (thymidylate kinase); ATP:DTMP phosphotransferase, transferase; HET: T5A; 1.98A {Escherichia coli} SCOP: c.37.1.1 PDB: 5tmp_A*
Probab=81.68 E-value=1.5 Score=41.20 Aligned_cols=25 Identities=28% Similarity=0.333 Sum_probs=20.4
Q ss_pred cCCEEEEEcCCCCcHHHHHHHHHHh
Q 006122 64 THATTIIVGETGSGKTTQIPQYLKE 88 (660)
Q Consensus 64 ~~~~vii~apTGsGKT~~ip~~l~~ 88 (660)
.+..+++.|+.||||||++-.+...
T Consensus 2 ~g~~i~~eG~~gsGKsT~~~~l~~~ 26 (213)
T 4tmk_A 2 RSKYIVIEGLEGAGKTTARNVVVET 26 (213)
T ss_dssp CCCEEEEEECTTSCHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHH
Confidence 3678999999999999998765543
No 393
>1c9k_A COBU, adenosylcobinamide kinase; alpha/beta structure rossmann fold P-loop, transferase; HET: 5GP; 2.20A {Salmonella typhimurium} SCOP: c.37.1.11 PDB: 1cbu_A
Probab=81.61 E-value=1.1 Score=40.83 Aligned_cols=46 Identities=17% Similarity=0.332 Sum_probs=28.1
Q ss_pred EEEEcCCCCcHHHHHHHHHHhccccCCCeEEEEeCchHHHHHHHHHHHHHHh
Q 006122 68 TIIVGETGSGKTTQIPQYLKEAGWADGGRVIACTQPRRLAVQAVASRVAEEM 119 (660)
Q Consensus 68 vii~apTGsGKT~~ip~~l~~~~~~~~~~~i~v~p~r~la~~~~~~~~~~~~ 119 (660)
++|.|++|||||+...++... +.+++++...... .....+|+....
T Consensus 2 ilV~Gg~~SGKS~~A~~la~~-----~~~~~yiaT~~~~-d~e~~~rI~~h~ 47 (180)
T 1c9k_A 2 ILVTGGARSGKSRHAEALIGD-----APQVLYIATSQIL-DDEMAARIQHHK 47 (180)
T ss_dssp EEEEECTTSSHHHHHHHHHCS-----CSSEEEEECCCC-------CHHHHHH
T ss_pred EEEECCCCCcHHHHHHHHHhc-----CCCeEEEecCCCC-CHHHHHHHHHHH
Confidence 689999999999888877643 3456777764432 234445555443
No 394
>3be4_A Adenylate kinase; malaria, cryptosporidium parvum nonprotein inhibitors, nucleotide-binding, transferase; HET: AP5; 1.60A {Cryptosporidium parvum iowa II}
Probab=81.61 E-value=1.1 Score=42.28 Aligned_cols=25 Identities=40% Similarity=0.480 Sum_probs=20.2
Q ss_pred CCEEEEEcCCCCcHHHHHHHHHHhc
Q 006122 65 HATTIIVGETGSGKTTQIPQYLKEA 89 (660)
Q Consensus 65 ~~~vii~apTGsGKT~~ip~~l~~~ 89 (660)
+..+++.|+.||||||+.-.+....
T Consensus 5 ~~~I~l~G~~GsGKsT~a~~La~~l 29 (217)
T 3be4_A 5 KHNLILIGAPGSGKGTQCEFIKKEY 29 (217)
T ss_dssp CCEEEEEECTTSSHHHHHHHHHHHH
T ss_pred ceEEEEECCCCCCHHHHHHHHHHHh
Confidence 3568999999999999987766544
No 395
>3d8b_A Fidgetin-like protein 1; AAA+, ATPase, ADP, SGC, structural genomics consortium, ATP- hydrolase, magnesium, metal-binding, nucleotide-binding; HET: ADP; 2.00A {Homo sapiens}
Probab=81.38 E-value=1.4 Score=45.03 Aligned_cols=25 Identities=20% Similarity=0.260 Sum_probs=20.3
Q ss_pred CCEEEEEcCCCCcHHHHHHHHHHhc
Q 006122 65 HATTIIVGETGSGKTTQIPQYLKEA 89 (660)
Q Consensus 65 ~~~vii~apTGsGKT~~ip~~l~~~ 89 (660)
...+++.||+|+|||+++-.+....
T Consensus 117 ~~~vLl~GppGtGKT~la~aia~~~ 141 (357)
T 3d8b_A 117 PKGILLFGPPGTGKTLIGKCIASQS 141 (357)
T ss_dssp CSEEEEESSTTSSHHHHHHHHHHHT
T ss_pred CceEEEECCCCCCHHHHHHHHHHHc
Confidence 5689999999999998877665443
No 396
>1xp8_A RECA protein, recombinase A; recombination, radioresistance, DNA-repair, ATPase, DNA-BIND protein, DNA binding protein; HET: AGS; 2.50A {Deinococcus radiodurans} SCOP: c.37.1.11 d.48.1.1
Probab=81.34 E-value=0.91 Score=46.68 Aligned_cols=42 Identities=24% Similarity=0.223 Sum_probs=31.3
Q ss_pred HhcCCEEEEEcCCCCcHHHHHHHHHHhccccCCCeEEEEeCch
Q 006122 62 VETHATTIIVGETGSGKTTQIPQYLKEAGWADGGRVIACTQPR 104 (660)
Q Consensus 62 l~~~~~vii~apTGsGKT~~ip~~l~~~~~~~~~~~i~v~p~r 104 (660)
+..+..++|.|++|+|||++.-+++..... .+.+++++....
T Consensus 71 l~~G~li~I~G~pGsGKTtlal~la~~~~~-~g~~vlyi~~E~ 112 (366)
T 1xp8_A 71 IPRGRITEIYGPESGGKTTLALAIVAQAQK-AGGTCAFIDAEH 112 (366)
T ss_dssp EETTSEEEEEESTTSSHHHHHHHHHHHHHH-TTCCEEEEESSC
T ss_pred ccCCcEEEEEcCCCCChHHHHHHHHHHHHH-CCCeEEEEECCC
Confidence 446789999999999999888777766532 345677776554
No 397
>4db1_A Myosin-7; S1DC, cardiac, beta isoform, MYH7, myhcb, MYHC-beta, contractIle protein; HET: ANP; 2.60A {Homo sapiens} PDB: 2w4a_M 2w4g_M 2w4h_M 2mys_A* 1m8q_A* 1mvw_A* 1o18_A* 1o19_A* 1o1a_A* 1o1b_A* 1o1c_A* 1o1d_A* 1o1e_A* 1o1f_A* 1o1g_A*
Probab=81.31 E-value=2 Score=48.46 Aligned_cols=55 Identities=16% Similarity=0.264 Sum_probs=38.6
Q ss_pred cccCCCCCCCccchHhHHHH--hcCCC--cHHHHHHHHHHHh---cCCEEEEEcCCCCcHHH
Q 006122 26 SSSLSSASSIGYGYASIEKQ--RQRLP--VYKYRTAILYLVE---THATTIIVGETGSGKTT 80 (660)
Q Consensus 26 ~~~~~~~~~~~~~~~~~~~~--~~~lP--i~~~~~~i~~~l~---~~~~vii~apTGsGKT~ 80 (660)
-+||..+|+-++......+. +..+| +|+.-+.....+. .+|.+||+|++|+|||.
T Consensus 125 vNPyk~l~iY~~~~~~~Y~g~~~~~~pPHifaiA~~Ay~~m~~~~~nQsIiiSGESGAGKTe 186 (783)
T 4db1_A 125 VNPYKWLPVYTPEVVAAYRGKKRSEAPPHIFSISDNAYQYMLTDRENQSILITGESGAGKTV 186 (783)
T ss_dssp ECCSSCCSCSSHHHHHHHTTCCGGGSCCCHHHHHHHHHHHHHHHTCCEEEEEECSTTSSHHH
T ss_pred cCCCccCCCCCHHHHHHhcCCCcCCCCchhhHHHHHHHHHHHhhCCCceEEEeCCCCCCCch
Confidence 35688888766655444332 23455 7777777777663 57889999999999993
No 398
>2if2_A Dephospho-COA kinase; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative, northeast structural genomics consortium, NESG; 3.00A {Aquifex aeolicus}
Probab=81.31 E-value=0.86 Score=42.29 Aligned_cols=21 Identities=24% Similarity=0.406 Sum_probs=17.6
Q ss_pred EEEEEcCCCCcHHHHHHHHHH
Q 006122 67 TTIIVGETGSGKTTQIPQYLK 87 (660)
Q Consensus 67 ~vii~apTGsGKT~~ip~~l~ 87 (660)
.+.|.|+.||||||+.-.+..
T Consensus 3 ~i~i~G~~GsGKSTl~~~L~~ 23 (204)
T 2if2_A 3 RIGLTGNIGCGKSTVAQMFRE 23 (204)
T ss_dssp EEEEEECTTSSHHHHHHHHHH
T ss_pred EEEEECCCCcCHHHHHHHHHH
Confidence 588999999999998876554
No 399
>1oxx_K GLCV, glucose, ABC transporter, ATP binding protein; ABC-ATPase, ATP-binding cassette, ATPase, transport protein; 1.45A {Sulfolobus solfataricus} SCOP: b.40.6.3 c.37.1.12 PDB: 1oxs_C 1oxt_A 1oxu_A* 1oxv_A*
Probab=81.26 E-value=0.45 Score=48.75 Aligned_cols=25 Identities=32% Similarity=0.345 Sum_probs=21.4
Q ss_pred hcCCEEEEEcCCCCcHHHHHHHHHH
Q 006122 63 ETHATTIIVGETGSGKTTQIPQYLK 87 (660)
Q Consensus 63 ~~~~~vii~apTGsGKT~~ip~~l~ 87 (660)
..+..+.|.||+||||||++-.+.-
T Consensus 29 ~~Ge~~~llGpnGsGKSTLLr~iaG 53 (353)
T 1oxx_K 29 ENGERFGILGPSGAGKTTFMRIIAG 53 (353)
T ss_dssp CTTCEEEEECSCHHHHHHHHHHHHT
T ss_pred CCCCEEEEECCCCCcHHHHHHHHhC
Confidence 5688999999999999999876653
No 400
>2vhj_A Ntpase P4, P4; non- hydrolysable ATP analogue, hydrolase, virus dsRNA, molecular motor, packaging ATPase, hexameric helicase; HET: ADP; 1.80A {Pseudomonas phage PHI12} PDB: 2vhq_A* 1w44_A* 1w46_A* 1w47_A* 1w48_A* 1w49_A* 1w4a_A* 1w4b_A* 1w4c_A 2vht_A* 2vhu_A* 2vhc_A*
Probab=81.17 E-value=0.5 Score=47.43 Aligned_cols=27 Identities=22% Similarity=0.266 Sum_probs=21.8
Q ss_pred HhcCCEEEEEcCCCCcHHHHHHHHHHh
Q 006122 62 VETHATTIIVGETGSGKTTQIPQYLKE 88 (660)
Q Consensus 62 l~~~~~vii~apTGsGKT~~ip~~l~~ 88 (660)
+..+..++|.||+|+|||++.-++...
T Consensus 120 i~~gsviLI~GpPGsGKTtLAlqlA~~ 146 (331)
T 2vhj_A 120 RYASGMVIVTGKGNSGKTPLVHALGEA 146 (331)
T ss_dssp EEESEEEEEECSCSSSHHHHHHHHHHH
T ss_pred CCCCcEEEEEcCCCCCHHHHHHHHHHh
Confidence 345677899999999999888877665
No 401
>3uk6_A RUVB-like 2; hexameric AAA+ ATP-ASE, DNA unwinding, hydrolase; HET: ADP; 2.95A {Homo sapiens} PDB: 2xsz_D*
Probab=81.11 E-value=1.4 Score=45.09 Aligned_cols=24 Identities=25% Similarity=0.405 Sum_probs=19.8
Q ss_pred CEEEEEcCCCCcHHHHHHHHHHhc
Q 006122 66 ATTIIVGETGSGKTTQIPQYLKEA 89 (660)
Q Consensus 66 ~~vii~apTGsGKT~~ip~~l~~~ 89 (660)
+.+++.||+|+|||+++-.+....
T Consensus 71 ~~vLl~GppGtGKT~la~~la~~l 94 (368)
T 3uk6_A 71 RAVLIAGQPGTGKTAIAMGMAQAL 94 (368)
T ss_dssp CEEEEEESTTSSHHHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHHHh
Confidence 479999999999998877666554
No 402
>2eyq_A TRCF, transcription-repair coupling factor; MFD, SF2 ATPase, hydrolase; HET: EPE; 3.20A {Escherichia coli} SCOP: b.34.18.1 c.37.1.19 c.37.1.19 c.37.1.19 c.37.1.19 d.315.1.1
Probab=80.98 E-value=2.1 Score=51.06 Aligned_cols=79 Identities=13% Similarity=0.154 Sum_probs=65.4
Q ss_pred CCCcEEEEcCCHHHHHHHHHHHHHHhhhccCCCCCeEEEEccCCCCHHHHhhhcCCCCCCCcEEEEeCC-CcccccCCCC
Q 006122 275 PPGDILVFLTGQDDIDATIQLLTEEARTSKKNSSGLIILPLYSGLSRAEQEQVFSPTPRGKRKVVISTN-IAETSLTLEG 353 (660)
Q Consensus 275 ~~~~iLVF~~~~~~i~~l~~~L~~~~~~~~~~~~~~~v~~lh~~l~~~~r~~v~~~f~~g~~~vlvaT~-i~e~Gidip~ 353 (660)
.+.+++|.+|++.-++..++.+.+.+.. .+..+..+++..+..++..+++...+|..+|+|+|. .+...+.+.+
T Consensus 651 ~g~~vlvlvPt~~La~Q~~~~~~~~~~~-----~~i~v~~l~~~~~~~~~~~~~~~l~~g~~dIvV~T~~ll~~~~~~~~ 725 (1151)
T 2eyq_A 651 NHKQVAVLVPTTLLAQQHYDNFRDRFAN-----WPVRIEMISRFRSAKEQTQILAEVAEGKIDILIGTHKLLQSDVKFKD 725 (1151)
T ss_dssp TTCEEEEECSSHHHHHHHHHHHHHHSTT-----TTCCEEEESTTSCHHHHHHHHHHHHTTCCSEEEECTHHHHSCCCCSS
T ss_pred hCCeEEEEechHHHHHHHHHHHHHHhhc-----CCCeEEEEeCCCCHHHHHHHHHHHhcCCCCEEEECHHHHhCCccccc
Confidence 4568999999999999999988876532 256788899999999998888888889999999995 4556688899
Q ss_pred eEEEE
Q 006122 354 IVYVV 358 (660)
Q Consensus 354 v~~VI 358 (660)
+.+||
T Consensus 726 l~lvI 730 (1151)
T 2eyq_A 726 LGLLI 730 (1151)
T ss_dssp EEEEE
T ss_pred cceEE
Confidence 98876
No 403
>4edh_A DTMP kinase, thymidylate kinase; structural genomics, PSI-biology; HET: TMP ADP; 1.32A {Pseudomonas aeruginosa PAO1} PDB: 4e5u_A* 4esh_A* 4gmd_A* 3uwk_A* 3uwo_A* 3uxm_A*
Probab=80.92 E-value=1.6 Score=41.09 Aligned_cols=40 Identities=23% Similarity=0.249 Sum_probs=26.5
Q ss_pred cCCEEEEEcCCCCcHHHHHHHHHHhccccCCCeEEEEeCch
Q 006122 64 THATTIIVGETGSGKTTQIPQYLKEAGWADGGRVIACTQPR 104 (660)
Q Consensus 64 ~~~~vii~apTGsGKT~~ip~~l~~~~~~~~~~~i~v~p~r 104 (660)
.+..+++.|+.||||||++-.+..... ..+..++..-.|.
T Consensus 5 ~g~~i~~eG~~gsGKsT~~~~l~~~l~-~~~~~v~~~~~p~ 44 (213)
T 4edh_A 5 TGLFVTLEGPEGAGKSTNRDYLAERLR-ERGIEVQLTREPG 44 (213)
T ss_dssp CCEEEEEECSTTSSHHHHHHHHHHHHH-TTTCCEEEEESSC
T ss_pred CceEEEEEcCCCCCHHHHHHHHHHHHH-HcCCCcccccCCC
Confidence 466889999999999999876654332 2333444444443
No 404
>1vht_A Dephospho-COA kinase; structural genomics, transferase; HET: BA3; 1.59A {Escherichia coli} SCOP: c.37.1.1 PDB: 1vhl_A* 1viy_A 1t3h_A 1n3b_A
Probab=80.87 E-value=0.78 Score=43.14 Aligned_cols=22 Identities=27% Similarity=0.427 Sum_probs=18.2
Q ss_pred CCEEEEEcCCCCcHHHHHHHHH
Q 006122 65 HATTIIVGETGSGKTTQIPQYL 86 (660)
Q Consensus 65 ~~~vii~apTGsGKT~~ip~~l 86 (660)
+..+.|.|+.||||||+.-.+.
T Consensus 4 ~~~I~i~G~~GSGKST~~~~L~ 25 (218)
T 1vht_A 4 RYIVALTGGIGSGKSTVANAFA 25 (218)
T ss_dssp CEEEEEECCTTSCHHHHHHHHH
T ss_pred ceEEEEECCCCCCHHHHHHHHH
Confidence 3478999999999999887654
No 405
>1tf7_A KAIC; homohexamer, hexamer, circadian clock protein; HET: ATP; 2.80A {Synechococcus SP} SCOP: c.37.1.11 c.37.1.11 PDB: 3s1a_A* 1u9i_A* 2gbl_A* 3dvl_A* 3k0a_A* 3k09_A* 3jzm_A* 3k0e_A* 4dug_A* 3ua2_A* 3k0c_A* 3k0f_A*
Probab=80.83 E-value=1 Score=48.94 Aligned_cols=41 Identities=22% Similarity=0.307 Sum_probs=30.0
Q ss_pred HHhcCCEEEEEcCCCCcHHHHHHHHHHhccccCCCeEEEEeC
Q 006122 61 LVETHATTIIVGETGSGKTTQIPQYLKEAGWADGGRVIACTQ 102 (660)
Q Consensus 61 ~l~~~~~vii~apTGsGKT~~ip~~l~~~~~~~~~~~i~v~p 102 (660)
.+..+..++|.||+||||||++-+++..... .+.++++++.
T Consensus 277 ~i~~G~i~~i~G~~GsGKSTLl~~l~g~~~~-~G~~vi~~~~ 317 (525)
T 1tf7_A 277 GFFKDSIILATGATGTGKTLLVSRFVENACA-NKERAILFAY 317 (525)
T ss_dssp SEESSCEEEEEECTTSSHHHHHHHHHHHHHT-TTCCEEEEES
T ss_pred CCCCCcEEEEEeCCCCCHHHHHHHHHHHHHh-CCCCEEEEEE
Confidence 3567889999999999999988877655432 3445666654
No 406
>3auy_A DNA double-strand break repair RAD50 ATPase; DNA repair, ABC transporter ATPase domain-like; HET: DNA ADP; 2.70A {Methanocaldococcus jannaschii} PDB: 3aux_A* 3av0_B*
Probab=80.82 E-value=0.82 Score=47.18 Aligned_cols=23 Identities=30% Similarity=0.509 Sum_probs=18.7
Q ss_pred CCEEEEEcCCCCcHHHHHHHHHH
Q 006122 65 HATTIIVGETGSGKTTQIPQYLK 87 (660)
Q Consensus 65 ~~~vii~apTGsGKT~~ip~~l~ 87 (660)
....+|+|+||+|||+++-.+.+
T Consensus 25 ~gl~vi~G~NGaGKT~ileAI~~ 47 (371)
T 3auy_A 25 KGIVAIIGENGSGKSSIFEAVFF 47 (371)
T ss_dssp SEEEEEEECTTSSHHHHHHHHHH
T ss_pred CCeEEEECCCCCCHHHHHHHHHH
Confidence 35789999999999988875543
No 407
>3qks_A DNA double-strand break repair RAD50 ATPase; RECA-like fold, coiled-coils, ATPase, exonuclease, endonucle binding, DNA binding; HET: DNA; 2.10A {Pyrococcus furiosus} PDB: 3qkr_A*
Probab=80.72 E-value=1 Score=42.01 Aligned_cols=23 Identities=30% Similarity=0.624 Sum_probs=18.3
Q ss_pred CCEEEEEcCCCCcHHHHHHHHHH
Q 006122 65 HATTIIVGETGSGKTTQIPQYLK 87 (660)
Q Consensus 65 ~~~vii~apTGsGKT~~ip~~l~ 87 (660)
....+|.||+|||||+++-.+.+
T Consensus 23 ~~~~~I~G~NgsGKStil~ai~~ 45 (203)
T 3qks_A 23 EGINLIIGQNGSGKSSLLDAILV 45 (203)
T ss_dssp SEEEEEECCTTSSHHHHHHHHHH
T ss_pred CCeEEEEcCCCCCHHHHHHHHHH
Confidence 35789999999999988765433
No 408
>1odf_A YGR205W, hypothetical 33.3 kDa protein in ADE3-Ser2 intergenic region; yeast protein, ATP binding protein; 2.25A {Saccharomyces cerevisiae} SCOP: c.37.1.6
Probab=80.57 E-value=0.89 Score=45.13 Aligned_cols=23 Identities=26% Similarity=0.267 Sum_probs=17.8
Q ss_pred CCEEEEEcCCCCcHHHHHHHHHH
Q 006122 65 HATTIIVGETGSGKTTQIPQYLK 87 (660)
Q Consensus 65 ~~~vii~apTGsGKT~~ip~~l~ 87 (660)
+..+.|.|++||||||++-.+..
T Consensus 31 ~~ii~I~G~sGsGKSTla~~L~~ 53 (290)
T 1odf_A 31 PLFIFFSGPQGSGKSFTSIQIYN 53 (290)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHH
Confidence 34788999999999988765443
No 409
>3v9p_A DTMP kinase, thymidylate kinase; ssgcid, STRU genomics, seattle structural genomics center for infectious transferase; 1.90A {Burkholderia thailandensis}
Probab=80.44 E-value=0.89 Score=43.31 Aligned_cols=28 Identities=21% Similarity=0.302 Sum_probs=18.8
Q ss_pred HHhcCCEEEEEcCCCCcHHHHHHHHHHh
Q 006122 61 LVETHATTIIVGETGSGKTTQIPQYLKE 88 (660)
Q Consensus 61 ~l~~~~~vii~apTGsGKT~~ip~~l~~ 88 (660)
.+..+..+++.|+.||||||++-.+...
T Consensus 21 ~m~~g~~I~~eG~~GsGKsT~~~~l~~~ 48 (227)
T 3v9p_A 21 SMARGKFITFEGIDGAGKTTHLQWFCDR 48 (227)
T ss_dssp --CCCCEEEEECCC---CHHHHHHHHHH
T ss_pred cccCCeEEEEECCCCCCHHHHHHHHHHH
Confidence 3457888999999999999998766543
No 410
>4hlc_A DTMP kinase, thymidylate kinase; TMK, MRSA, pipiridine, transfera transferase inhibitor complex; HET: T05; 1.55A {Staphylococcus aureus subsp} PDB: 2cck_A 4gfd_A* 4gsy_A* 4hdc_A* 4hej_A* 2ccj_A* 4hld_A* 2ccg_A*
Probab=80.39 E-value=1.8 Score=40.38 Aligned_cols=37 Identities=32% Similarity=0.372 Sum_probs=25.3
Q ss_pred CCEEEEEcCCCCcHHHHHHHHHHhccccCCCeEEEEeCc
Q 006122 65 HATTIIVGETGSGKTTQIPQYLKEAGWADGGRVIACTQP 103 (660)
Q Consensus 65 ~~~vii~apTGsGKT~~ip~~l~~~~~~~~~~~i~v~p~ 103 (660)
++.+++.|+-|||||||+-.+.... ..+..++..-.|
T Consensus 2 ~kFI~~EG~dGsGKsTq~~~L~~~L--~~~~~v~~~~eP 38 (205)
T 4hlc_A 2 SAFITFEGPEGSGKTTVINEVYHRL--VKDYDVIMTREP 38 (205)
T ss_dssp CEEEEEECCTTSCHHHHHHHHHHHH--TTTSCEEEEESS
T ss_pred CCEEEEECCCCCcHHHHHHHHHHHH--HCCCCEEEeeCC
Confidence 3568899999999999987655433 234455555555
No 411
>2l8b_A Protein TRAI, DNA helicase I; RECD, hydrolase; NMR {Escherichia coli}
Probab=80.17 E-value=6.5 Score=35.65 Aligned_cols=122 Identities=17% Similarity=0.247 Sum_probs=64.6
Q ss_pred CCcHHHHHHHHHHH--hcCCEEEEEcCCCCcHHHH-HHHHHHhccccCCCeEEEEeCchHHHHHHHHHHHHHHhCCeeee
Q 006122 49 LPVYKYRTAILYLV--ETHATTIIVGETGSGKTTQ-IPQYLKEAGWADGGRVIACTQPRRLAVQAVASRVAEEMGVKVGE 125 (660)
Q Consensus 49 lPi~~~~~~i~~~l--~~~~~vii~apTGsGKT~~-ip~~l~~~~~~~~~~~i~v~p~r~la~~~~~~~~~~~~~~~~~~ 125 (660)
+|-..-|.+....+ ...++.+|.|+-|++|+.. +.. +.......+..+.+++|..+-.. . +...++.
T Consensus 33 ~~~~~~~~~a~~~l~~s~~~~~iv~g~ggs~~~~~~~a~-L~~~a~~~Gr~V~vLAp~~~s~~-~--------l~~~~~l 102 (189)
T 2l8b_A 33 VPRTAGYSDAVSVLAQDRPSLAIVSGQGGAAGQRERVAE-LVMMAREQGREVQIIAADRRSQM-N--------MKQDERL 102 (189)
T ss_dssp CCCHHHHHHHHHHHHHHSCCEECCBCSSCSHHHHHHHHH-HHHHHHHTTCCEEEECSTTHHHH-H--------HSCTTTC
T ss_pred cccCccchhHHHHHhccCCceEEEecccchHHHHHHHHH-HHHHHHhcCeEEEEEcCchHHHH-H--------HHhhcCc
Confidence 34444455555555 4467899999999999944 333 23333345666778887754322 2 2211110
Q ss_pred EEeeeeeccccCCCCCceEEEechHHHHHHHhcCCC-CCCCcEEEEeCCCcCCcChhHHHHHHHHHHHhcCCceEEEeec
Q 006122 126 EVGYTIRFEDFTNKDLTAIKFLTDGVLLREMMDDPL-LTKYSVIMVDEAHERSISTDILLGLLKKIQRCRSDLRLIISSA 204 (660)
Q Consensus 126 ~vg~~~~~~~~~~~~~~~I~v~T~~~ll~~l~~~~~-l~~~~~iIiDE~Her~~~~d~ll~~l~~~~~~~~~~kii~~SA 204 (660)
+ .+++ |-. .+..+.. +..=+.+||||+-.. ...-++.++....+ .+.|+|++--
T Consensus 103 --------~-------~~t~--t~~----~ll~~~~~~tp~s~lIVD~AekL--S~kE~~~Lld~A~~--~naqvvll~~ 157 (189)
T 2l8b_A 103 --------S-------GELI--TGR----RQLLEGMAFTPGSTVIVDQGEKL--SLKETLTLLDGAAR--HNVQVLITDS 157 (189)
T ss_dssp --------S-------SCSS--STT----TTTTTSCCCCCCCEEEEEESSSH--HHHHHHHHHHHHHH--TTCCEEEEES
T ss_pred --------C-------ccee--ehh----hhhcCCCCCCCCCEEEEechhhc--CHHHHHHHHHHHHh--cCCEEEEeCC
Confidence 0 0000 110 1112222 456679999999842 22344455555443 3588888764
Q ss_pred c
Q 006122 205 T 205 (660)
Q Consensus 205 T 205 (660)
+
T Consensus 158 ~ 158 (189)
T 2l8b_A 158 G 158 (189)
T ss_dssp S
T ss_pred c
Confidence 4
No 412
>3cmw_A Protein RECA, recombinase A; homologous recombination, recombination/DNA complex; HET: DNA ADP; 2.80A {Escherichia coli} PDB: 3cmt_A* 3cmx_A* 3cmv_A*
Probab=80.06 E-value=1.2 Score=54.60 Aligned_cols=87 Identities=22% Similarity=0.158 Sum_probs=55.1
Q ss_pred cCCEEEEEcCCCCcHHHHHHHHHHhccccCCCeEEEEeCchHHHHHHHHHHHHHHhCCeeeeEEeeeeeccccCCCCCce
Q 006122 64 THATTIIVGETGSGKTTQIPQYLKEAGWADGGRVIACTQPRRLAVQAVASRVAEEMGVKVGEEVGYTIRFEDFTNKDLTA 143 (660)
Q Consensus 64 ~~~~vii~apTGsGKT~~ip~~l~~~~~~~~~~~i~v~p~r~la~~~~~~~~~~~~~~~~~~~vg~~~~~~~~~~~~~~~ 143 (660)
.+.++.|.||.||||||++..++.+.. ..++.++++..+.++...- ++..|+.+..
T Consensus 1430 rg~~iei~g~~~sGkttl~~~~~a~~~-~~g~~~~~i~~e~~~~~~~-----~~~~Gv~~~~------------------ 1485 (1706)
T 3cmw_A 1430 MGRIVEIYGPESSGKTTLTLQVIAAAQ-REGKTCAFIDAEHALDPIY-----ARKLGVDIDN------------------ 1485 (1706)
T ss_dssp TTSEEEEECSTTSSHHHHHHHHHHHHH-HTTCCEEEECTTSCCCHHH-----HHHTTCCGGG------------------
T ss_pred CCCEEEEEcCCCCCHHHHHHHHHHHHH-hcCCeEEEEecCCCCCHHH-----HHHcCCCHHH------------------
Confidence 468999999999999999888887763 3567788888776554432 5556665432
Q ss_pred EEEech---HHHHHHHhcCCCCCCCcEEEEeCCC
Q 006122 144 IKFLTD---GVLLREMMDDPLLTKYSVIMVDEAH 174 (660)
Q Consensus 144 I~v~T~---~~ll~~l~~~~~l~~~~~iIiDE~H 174 (660)
+++.-| +..+..+..--.-..+++||||.+-
T Consensus 1486 l~~~~p~~~e~~l~~~~~~~~s~~~~~vvvDsv~ 1519 (1706)
T 3cmw_A 1486 LLCSQPDTGEQALEICDALARSGAVDVIVVDSVA 1519 (1706)
T ss_dssp CEEECCSSHHHHHHHHHHHHHHTCCSEEEESCST
T ss_pred eEEeCCCcHHHHHHHHHHHHHcCCCCEEEEccHH
Confidence 233333 3332222110012357899999987
No 413
>1svm_A Large T antigen; AAA+ fold, viral protein; HET: ATP; 1.94A {Simian virus 40} SCOP: c.37.1.20 PDB: 1svl_A* 1svo_A 1n25_A 2h1l_A
Probab=80.02 E-value=0.95 Score=46.71 Aligned_cols=26 Identities=27% Similarity=0.245 Sum_probs=21.7
Q ss_pred hcCCEEEEEcCCCCcHHHHHHHHHHh
Q 006122 63 ETHATTIIVGETGSGKTTQIPQYLKE 88 (660)
Q Consensus 63 ~~~~~vii~apTGsGKT~~ip~~l~~ 88 (660)
..++.+++.||+||||||++-.+...
T Consensus 167 ~~~~~i~l~G~~GsGKSTl~~~l~~~ 192 (377)
T 1svm_A 167 PKKRYWLFKGPIDSGKTTLAAALLEL 192 (377)
T ss_dssp TTCCEEEEECSTTSSHHHHHHHHHHH
T ss_pred CCCCEEEEECCCCCCHHHHHHHHHhh
Confidence 46789999999999999988766643
No 414
>2r2a_A Uncharacterized protein; zonular occludens toxin, structural genomics, APC84050.2, PS protein structure initiative; HET: MSE; 1.82A {Neisseria meningitidis MC58}
Probab=80.00 E-value=1.5 Score=40.73 Aligned_cols=23 Identities=30% Similarity=0.541 Sum_probs=17.7
Q ss_pred EEEEEcCCCCcHHHHHHHHHHhc
Q 006122 67 TTIIVGETGSGKTTQIPQYLKEA 89 (660)
Q Consensus 67 ~vii~apTGsGKT~~ip~~l~~~ 89 (660)
..+++|+.|||||+.+-.++...
T Consensus 7 i~l~tG~pGsGKT~~a~~~~~~~ 29 (199)
T 2r2a_A 7 ICLITGTPGSGKTLKMVSMMAND 29 (199)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHC
T ss_pred EEEEEeCCCCCHHHHHHHHHHHH
Confidence 57899999999997765554443
No 415
>3b5x_A Lipid A export ATP-binding/permease protein MSBA; ABC transporter, lipid flippase, hydrolase, inner membrane, lipid transport, membrane; 5.50A {Vibrio cholerae}
Probab=79.92 E-value=1 Score=49.68 Aligned_cols=27 Identities=30% Similarity=0.460 Sum_probs=22.7
Q ss_pred HhcCCEEEEEcCCCCcHHHHHHHHHHh
Q 006122 62 VETHATTIIVGETGSGKTTQIPQYLKE 88 (660)
Q Consensus 62 l~~~~~vii~apTGsGKT~~ip~~l~~ 88 (660)
+..|+.+.|.||+||||||++-.+...
T Consensus 366 i~~G~~~~ivG~sGsGKSTll~~l~g~ 392 (582)
T 3b5x_A 366 IPQGKTVALVGRSGSGKSTIANLFTRF 392 (582)
T ss_pred ECCCCEEEEECCCCCCHHHHHHHHhcC
Confidence 467899999999999999998766543
No 416
>3t15_A Ribulose bisphosphate carboxylase/oxygenase activ chloroplastic; photosynthesis, rubisco activase, AAA+ protein; 2.95A {Nicotiana tabacum} PDB: 3zw6_A
Probab=79.90 E-value=1.1 Score=44.52 Aligned_cols=24 Identities=25% Similarity=0.268 Sum_probs=19.2
Q ss_pred CEEEEEcCCCCcHHHHHHHHHHhc
Q 006122 66 ATTIIVGETGSGKTTQIPQYLKEA 89 (660)
Q Consensus 66 ~~vii~apTGsGKT~~ip~~l~~~ 89 (660)
..+++.||+|+|||+++-.+....
T Consensus 37 ~~lLl~GppGtGKT~la~aiA~~l 60 (293)
T 3t15_A 37 LILGIWGGKGQGKSFQCELVFRKM 60 (293)
T ss_dssp SEEEEEECTTSCHHHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHHh
Confidence 568899999999998777665554
No 417
>3lv8_A DTMP kinase, thymidylate kinase; structural genomics, in diseases, center for structural genomics of infectious DISE ATP-binding; HET: ADP TMP TYD; 1.80A {Vibrio cholerae o1 biovar eltor} PDB: 3n2i_A*
Probab=79.79 E-value=1.9 Score=41.31 Aligned_cols=26 Identities=27% Similarity=0.381 Sum_probs=21.2
Q ss_pred cCCEEEEEcCCCCcHHHHHHHHHHhc
Q 006122 64 THATTIIVGETGSGKTTQIPQYLKEA 89 (660)
Q Consensus 64 ~~~~vii~apTGsGKT~~ip~~l~~~ 89 (660)
.+..+++.|+.||||||++..+....
T Consensus 26 ~~~~i~~eG~~GsGKsT~~~~l~~~l 51 (236)
T 3lv8_A 26 NAKFIVIEGLEGAGKSTAIQVVVETL 51 (236)
T ss_dssp CCCEEEEEESTTSCHHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHH
Confidence 46789999999999999987665443
No 418
>1uf9_A TT1252 protein; P-loop, nucleotide binding domain, structural genomics, riken structural genomics/proteomics initiative, RSGI; HET: ATP; 2.80A {Thermus thermophilus} SCOP: c.37.1.1
Probab=79.74 E-value=1 Score=41.51 Aligned_cols=22 Identities=32% Similarity=0.324 Sum_probs=18.1
Q ss_pred CEEEEEcCCCCcHHHHHHHHHH
Q 006122 66 ATTIIVGETGSGKTTQIPQYLK 87 (660)
Q Consensus 66 ~~vii~apTGsGKT~~ip~~l~ 87 (660)
..+.|.|++||||||+.-.+..
T Consensus 9 ~~I~i~G~~GsGKST~~~~La~ 30 (203)
T 1uf9_A 9 IIIGITGNIGSGKSTVAALLRS 30 (203)
T ss_dssp EEEEEEECTTSCHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHH
Confidence 4688999999999988876544
No 419
>1w9i_A Myosin II heavy chain; molecular motor, ATPase, motor domain, mutant, muscle contraction; HET: ADP; 1.75A {Dictyostelium discoideum} PDB: 1w9j_A* 1w9l_A* 1w9k_A* 1mma_A* 2aka_A 1d0x_A* 1d0y_A* 1d0z_A* 1d1a_A* 1d1b_A* 1d1c_A* 2xel_A* 1yv3_A* 3bz7_A* 3bz8_A* 3bz9_A* 1jwy_A* 1jx2_A* 3mjx_A* 2jhr_A* ...
Probab=79.64 E-value=2.3 Score=47.80 Aligned_cols=55 Identities=18% Similarity=0.316 Sum_probs=37.2
Q ss_pred ccCCCCCCCccchHhHHHH--hcCCC--cHHHHHHHHHHH---hcCCEEEEEcCCCCcHHHH
Q 006122 27 SSLSSASSIGYGYASIEKQ--RQRLP--VYKYRTAILYLV---ETHATTIIVGETGSGKTTQ 81 (660)
Q Consensus 27 ~~~~~~~~~~~~~~~~~~~--~~~lP--i~~~~~~i~~~l---~~~~~vii~apTGsGKT~~ 81 (660)
++|..+|+-++......+. +..+| +|+.-+.....+ ..+|.+||+|++|+|||..
T Consensus 127 NPyk~l~iY~~~~~~~Y~~~~~~~~pPHifaiA~~Ay~~m~~~~~nQsIiisGESGAGKTe~ 188 (770)
T 1w9i_A 127 NPFKRIPIYTQEMVDIFKGRRRNEVAPHIFAISDVAYRSMLDDRQNQSLLITGESGAGKTEN 188 (770)
T ss_dssp CCSSCCSCCSHHHHHHHTTCCGGGSCCCHHHHHHHHHHHHHHHCCCEEEEEECSTTSSHHHH
T ss_pred cCCccccCCCHHHHHHhcCCCcCCCCccHHHHHHHHHHHHHhhcCCcEEEEecCCCCcchHH
Confidence 5688888666554433332 23455 666667776665 3578899999999999943
No 420
>4anj_A Unconventional myosin-VI, green fluorescent prote; motor protein-metal-bindng protein complex, molecular motor, metal-binding protein, transition state; HET: CR2 ADP; 2.60A {Sus scrofa}
Probab=79.41 E-value=2.4 Score=49.51 Aligned_cols=55 Identities=16% Similarity=0.242 Sum_probs=37.5
Q ss_pred cccCCCCC-CCccchHhHHHHh--cCCC--cHHHHHHHHHHHh---cCCEEEEEcCCCCcHHH
Q 006122 26 SSSLSSAS-SIGYGYASIEKQR--QRLP--VYKYRTAILYLVE---THATTIIVGETGSGKTT 80 (660)
Q Consensus 26 ~~~~~~~~-~~~~~~~~~~~~~--~~lP--i~~~~~~i~~~l~---~~~~vii~apTGsGKT~ 80 (660)
-+||..+| +-++.+....+.+ ..+| +|+..+.+...+. .+|.+||+|++|||||.
T Consensus 97 VNPyk~lp~iY~~~~~~~Y~g~~~~~lpPHIfaiA~~AY~~M~~~~~nQsIiiSGESGAGKTe 159 (1052)
T 4anj_A 97 VNPYFDIPKIYSSETIKSYQGKSLGTMPPHVFAIADKAFRDMKVLKLSQSIIVSGESGAGKTE 159 (1052)
T ss_dssp ECCSSCCTTTTSHHHHHHHTTCCBTTBCSCHHHHHHHHHHHHHHHTCCEEEEEECSTTSSHHH
T ss_pred ECCCCCccccCCHHHHHHhcCCCCCCCCCcHHHHHHHHHHHHHHhCCCceEEEecCCCCCHHH
Confidence 35688886 5454444443322 3455 7777777777764 57899999999999993
No 421
>1w7j_A Myosin VA; motor protein, unconventional myosin, myosin V, chicken, molecular motor, ATPase, ELC, IQ motif, muscle protein, ATP-binding; HET: ADP; 2A {Gallus gallus} SCOP: b.34.3.1 c.37.1.9 PDB: 1w7i_A* 1oe9_A* 1w8j_A
Probab=79.34 E-value=2.5 Score=47.87 Aligned_cols=53 Identities=17% Similarity=0.270 Sum_probs=36.7
Q ss_pred ccCCCCCCCccchHhHHHH--hcCCC--cHHHHHHHHHHH---hcCCEEEEEcCCCCcHH
Q 006122 27 SSLSSASSIGYGYASIEKQ--RQRLP--VYKYRTAILYLV---ETHATTIIVGETGSGKT 79 (660)
Q Consensus 27 ~~~~~~~~~~~~~~~~~~~--~~~lP--i~~~~~~i~~~l---~~~~~vii~apTGsGKT 79 (660)
+||..+|+.++......+. +..+| +|+.-+.....+ ..+|.+||+|++|+|||
T Consensus 111 NPyk~l~iY~~~~~~~Y~g~~~~~~pPHifaiA~~Ay~~m~~~~~nQsIiisGESGAGKT 170 (795)
T 1w7j_A 111 NPYEQLPIYGEDIINAYSGQNMGDMDPHIFAVAEEAYKQMARDERNQSIIVSGESGAGKT 170 (795)
T ss_dssp CCSSCCSCCSHHHHHHHTTCCGGGSCCCHHHHHHHHHHHHHHHTCCEEEEEECSTTSSHH
T ss_pred cCccccCcCCHHHHHHHcCCCccCCCccHhHHHHHHHHHhHhcCCCeEEEEeCCCCCCcc
Confidence 4677887666554333332 23455 677777777666 35788999999999999
No 422
>1iy2_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 3.20A {Thermus thermophilus} SCOP: c.37.1.20
Probab=79.12 E-value=1.1 Score=43.91 Aligned_cols=24 Identities=33% Similarity=0.423 Sum_probs=19.3
Q ss_pred CEEEEEcCCCCcHHHHHHHHHHhc
Q 006122 66 ATTIIVGETGSGKTTQIPQYLKEA 89 (660)
Q Consensus 66 ~~vii~apTGsGKT~~ip~~l~~~ 89 (660)
+.+++.||+|+|||+++-.+....
T Consensus 74 ~gvll~Gp~GtGKTtl~~~i~~~~ 97 (278)
T 1iy2_A 74 KGVLLVGPPGVGKTHLARAVAGEA 97 (278)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHHT
T ss_pred CeEEEECCCcChHHHHHHHHHHHc
Confidence 348999999999998887665544
No 423
>3sop_A Neuronal-specific septin-3; hydrolase; HET: GDP; 2.88A {Homo sapiens}
Probab=79.09 E-value=1 Score=44.09 Aligned_cols=23 Identities=30% Similarity=0.621 Sum_probs=18.6
Q ss_pred EEEEEcCCCCcHHHHHHHHHHhc
Q 006122 67 TTIIVGETGSGKTTQIPQYLKEA 89 (660)
Q Consensus 67 ~vii~apTGsGKT~~ip~~l~~~ 89 (660)
++.|.||+|+||||++-.+.-..
T Consensus 4 ~v~lvG~nGaGKSTLln~L~g~~ 26 (270)
T 3sop_A 4 NIMVVGQSGLGKSTLVNTLFKSQ 26 (270)
T ss_dssp EEEEEESSSSSHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHhCCC
Confidence 47899999999999987666443
No 424
>1kk8_A Myosin heavy chain, striated muscle; actin-detached, mechanics of motor, contractIle PROT; HET: ADP; 2.30A {Argopecten irradians} SCOP: b.34.3.1 c.37.1.9 PDB: 1kk7_A* 1qvi_A* 1s5g_A* 1sr6_A 1b7t_A* 1kqm_A* 1kwo_A* 1l2o_A* 1dfl_A* 2w4t_C 2w4v_C 2w4w_C 1dfk_A 2ec6_A 2otg_A* 2os8_A* 2ovk_A 2ekv_A 2ekw_A 2oy6_A* ...
Probab=79.02 E-value=2.2 Score=48.59 Aligned_cols=53 Identities=15% Similarity=0.274 Sum_probs=36.4
Q ss_pred ccCCCCCCCccchHhHHHH--hcCCC--cHHHHHHHHHHHh---cCCEEEEEcCCCCcHH
Q 006122 27 SSLSSASSIGYGYASIEKQ--RQRLP--VYKYRTAILYLVE---THATTIIVGETGSGKT 79 (660)
Q Consensus 27 ~~~~~~~~~~~~~~~~~~~--~~~lP--i~~~~~~i~~~l~---~~~~vii~apTGsGKT 79 (660)
+||..+|+-++........ +..+| +|+.-+.....+. .+|.+||+|++|+|||
T Consensus 124 NPyk~l~iY~~~~~~~Y~g~~~~~~pPHifaiA~~Ay~~m~~~~~nQsIiiSGESGAGKT 183 (837)
T 1kk8_A 124 NPYRRLPIYTDSVIAKYRGKRKTEIPPHLFSVADNAYQNMVTDRENQSCLITGESGAGKT 183 (837)
T ss_dssp CCSSCCSTTSHHHHHHHTTCCGGGSCCCHHHHHHHHHHHHHHHTSEEEEEEECSTTSSHH
T ss_pred CCCcCCCCCCHHHHHHhcCCCcCCCCCcHHHHHHHHHHHHHhcCCCcEEEEeCCCCCCch
Confidence 5688888666554333322 23455 6777677766653 5688999999999999
No 425
>2x8a_A Nuclear valosin-containing protein-like; nuclear protein; 2.60A {Homo sapiens}
Probab=78.97 E-value=1.2 Score=43.77 Aligned_cols=24 Identities=29% Similarity=0.430 Sum_probs=19.3
Q ss_pred CEEEEEcCCCCcHHHHHHHHHHhc
Q 006122 66 ATTIIVGETGSGKTTQIPQYLKEA 89 (660)
Q Consensus 66 ~~vii~apTGsGKT~~ip~~l~~~ 89 (660)
+-+++.||+|||||+++-.+....
T Consensus 45 ~GvlL~Gp~GtGKTtLakala~~~ 68 (274)
T 2x8a_A 45 AGVLLAGPPGCGKTLLAKAVANES 68 (274)
T ss_dssp SEEEEESSTTSCHHHHHHHHHHHT
T ss_pred CeEEEECCCCCcHHHHHHHHHHHc
Confidence 449999999999998887665543
No 426
>1lkx_A Myosin IE heavy chain; myosin motor domain, lever ARM, converter domain, contractIle protein; HET: ADP; 3.00A {Dictyostelium discoideum} SCOP: c.37.1.9
Probab=78.92 E-value=2.2 Score=47.61 Aligned_cols=55 Identities=18% Similarity=0.307 Sum_probs=37.1
Q ss_pred cccCCCCCCCccchHhHHHH--hcCCC--cHHHHHHHHHHH---hcCCEEEEEcCCCCcHHH
Q 006122 26 SSSLSSASSIGYGYASIEKQ--RQRLP--VYKYRTAILYLV---ETHATTIIVGETGSGKTT 80 (660)
Q Consensus 26 ~~~~~~~~~~~~~~~~~~~~--~~~lP--i~~~~~~i~~~l---~~~~~vii~apTGsGKT~ 80 (660)
-++|..+|+-++......+. +..+| +|+.-+.....+ ..+|.+||+|++|+|||.
T Consensus 48 vNPyk~l~iY~~~~~~~Y~g~~~~~~pPHifaiA~~Ay~~m~~~~~nQsIiisGESGAGKTe 109 (697)
T 1lkx_A 48 TNPFKNLNIYKESDIKAYNGRYKYEMPPHMYALANDAYRSMRQSQENQCVIISGESGAGKTE 109 (697)
T ss_dssp ECCSSCCSCCSHHHHHHHSSCCGGGSCCCHHHHHHHHHHHHHHHCCCEEEEEECSTTSSHHH
T ss_pred EcCCcCCCCCCHHHHHHHhCCCCCCCCchHHHHHHHHHHHHHhcCCCcEEEecCCCCCCchh
Confidence 35688888666554333322 23455 677777776666 357889999999999993
No 427
>2qm8_A GTPase/ATPase; G protein, G3E, metallochaperone, chaperone; HET: MSE; 1.70A {Methylobacterium extorquens} SCOP: c.37.1.10 PDB: 2qm7_A*
Probab=78.73 E-value=1.8 Score=43.96 Aligned_cols=32 Identities=25% Similarity=0.227 Sum_probs=24.5
Q ss_pred HHHHHH----hcCCEEEEEcCCCCcHHHHHHHHHHh
Q 006122 57 AILYLV----ETHATTIIVGETGSGKTTQIPQYLKE 88 (660)
Q Consensus 57 ~i~~~l----~~~~~vii~apTGsGKT~~ip~~l~~ 88 (660)
.+++.+ ..+..+.|.|++|+||||++-.+...
T Consensus 43 ~~l~~i~~~~~~g~~v~i~G~~GaGKSTLl~~l~g~ 78 (337)
T 2qm8_A 43 DLIDAVLPQTGRAIRVGITGVPGVGKSTTIDALGSL 78 (337)
T ss_dssp HHHHHHGGGCCCSEEEEEECCTTSCHHHHHHHHHHH
T ss_pred HHHHhCCcccCCCeEEEEECCCCCCHHHHHHHHHHh
Confidence 455544 35678999999999999998876644
No 428
>2p5t_B PEZT; postsegregational killing system, phosphoryltransferase, HEL helix motif, transcription regulator; 3.20A {Streptococcus pneumoniae}
Probab=78.62 E-value=0.86 Score=44.15 Aligned_cols=25 Identities=32% Similarity=0.356 Sum_probs=20.2
Q ss_pred CCEEEEEcCCCCcHHHHHHHHHHhc
Q 006122 65 HATTIIVGETGSGKTTQIPQYLKEA 89 (660)
Q Consensus 65 ~~~vii~apTGsGKT~~ip~~l~~~ 89 (660)
+..+++.|++||||||+.-.+....
T Consensus 32 ~~~i~l~G~~GsGKSTla~~L~~~l 56 (253)
T 2p5t_B 32 PIAILLGGQSGAGKTTIHRIKQKEF 56 (253)
T ss_dssp CEEEEEESCGGGTTHHHHHHHHHHT
T ss_pred CeEEEEECCCCCCHHHHHHHHHHhc
Confidence 4578999999999999887765543
No 429
>3pxg_A Negative regulator of genetic competence CLPC/MEC; CLPB, proteolysis, CLPX, HSP100/CLP, AAA+ proteins, PR binding; 3.65A {Bacillus subtilis}
Probab=78.23 E-value=1.7 Score=46.43 Aligned_cols=33 Identities=21% Similarity=0.462 Sum_probs=23.4
Q ss_pred HHHHHHH--hcCCEEEEEcCCCCcHHHHHHHHHHh
Q 006122 56 TAILYLV--ETHATTIIVGETGSGKTTQIPQYLKE 88 (660)
Q Consensus 56 ~~i~~~l--~~~~~vii~apTGsGKT~~ip~~l~~ 88 (660)
+.+++.+ ....++++.||+|+|||+++-.+...
T Consensus 190 ~~l~~~l~r~~~~~~LL~G~pG~GKT~la~~la~~ 224 (468)
T 3pxg_A 190 QRVIEVLSRRTKNNPVLIGEPGVGKTAIAEGLAQQ 224 (468)
T ss_dssp HHHHHHHHCSSSCEEEEESCTTTTTHHHHHHHHHH
T ss_pred HHHHHHHhccCCCCeEEECCCCCCHHHHHHHHHHH
Confidence 3345555 34568999999999999877655443
No 430
>2rcn_A Probable GTPase ENGC; YJEQ, circularly permuted, GTP-binding, hydrolase, nucleotide-binding; HET: GDP; 2.25A {Salmonella typhimurium} PDB: 2ykr_W 4a2i_V
Probab=78.16 E-value=1.7 Score=44.38 Aligned_cols=26 Identities=27% Similarity=0.413 Sum_probs=21.8
Q ss_pred hcCCEEEEEcCCCCcHHHHHHHHHHh
Q 006122 63 ETHATTIIVGETGSGKTTQIPQYLKE 88 (660)
Q Consensus 63 ~~~~~vii~apTGsGKT~~ip~~l~~ 88 (660)
..+..+.+.||+|+||||++-.++-.
T Consensus 213 ~~G~~~~lvG~sG~GKSTLln~L~g~ 238 (358)
T 2rcn_A 213 LTGRISIFAGQSGVGKSSLLNALLGL 238 (358)
T ss_dssp HTTSEEEEECCTTSSHHHHHHHHHCC
T ss_pred cCCCEEEEECCCCccHHHHHHHHhcc
Confidence 46789999999999999999766543
No 431
>4a82_A Cystic fibrosis transmembrane conductance regulat; CFTR, ION channel, transport protein, casse protein; 2.00A {Homo sapiens} PDB: 2onj_A* 2hyd_A
Probab=78.15 E-value=0.76 Score=50.58 Aligned_cols=24 Identities=38% Similarity=0.448 Sum_probs=20.6
Q ss_pred hcCCEEEEEcCCCCcHHHHHHHHH
Q 006122 63 ETHATTIIVGETGSGKTTQIPQYL 86 (660)
Q Consensus 63 ~~~~~vii~apTGsGKT~~ip~~l 86 (660)
..++.+.|.||+||||||++-.+.
T Consensus 365 ~~G~~~~ivG~sGsGKSTll~~l~ 388 (578)
T 4a82_A 365 EKGETVAFVGMSGGGKSTLINLIP 388 (578)
T ss_dssp CTTCEEEEECSTTSSHHHHHTTTT
T ss_pred CCCCEEEEECCCCChHHHHHHHHh
Confidence 578999999999999999886544
No 432
>2npi_A Protein CLP1; CLP1-PCF11 complex, ATP binding, ternary complex, transcript; HET: ATP; 2.95A {Saccharomyces cerevisiae}
Probab=78.09 E-value=0.95 Score=48.11 Aligned_cols=31 Identities=23% Similarity=0.171 Sum_probs=24.2
Q ss_pred HHHHHhcCCEEEEEcCCCCcHHHHHHHHHHh
Q 006122 58 ILYLVETHATTIIVGETGSGKTTQIPQYLKE 88 (660)
Q Consensus 58 i~~~l~~~~~vii~apTGsGKT~~ip~~l~~ 88 (660)
+--.+..+..+.|.||+||||||++-.+.-.
T Consensus 131 vsl~i~~Ge~v~IvGpnGsGKSTLlr~L~Gl 161 (460)
T 2npi_A 131 IRMSNFEGPRVVIVGGSQTGKTSLSRTLCSY 161 (460)
T ss_dssp HHHHSSSCCCEEEEESTTSSHHHHHHHHHHT
T ss_pred CceEeCCCCEEEEECCCCCCHHHHHHHHhCc
Confidence 3344568899999999999999988765543
No 433
>2yv5_A YJEQ protein; hydrolase, GTPase, permutation, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: GDP; 1.90A {Aquifex aeolicus}
Probab=78.01 E-value=2.1 Score=42.70 Aligned_cols=25 Identities=20% Similarity=0.343 Sum_probs=21.5
Q ss_pred HhcCCEEEEEcCCCCcHHHHHHHHH
Q 006122 62 VETHATTIIVGETGSGKTTQIPQYL 86 (660)
Q Consensus 62 l~~~~~vii~apTGsGKT~~ip~~l 86 (660)
+..+..+.+.||+|+||||++-.+.
T Consensus 162 ~l~G~i~~l~G~sG~GKSTLln~l~ 186 (302)
T 2yv5_A 162 YLEGFICILAGPSGVGKSSILSRLT 186 (302)
T ss_dssp HTTTCEEEEECSTTSSHHHHHHHHH
T ss_pred hccCcEEEEECCCCCCHHHHHHHHH
Confidence 3457889999999999999998776
No 434
>3r20_A Cytidylate kinase; structural genomics, seattle structural genomics center for infectious disease, ssgcid, ADP, DCMP, D transferase; 2.00A {Mycobacterium smegmatis} SCOP: c.37.1.0 PDB: 3r8c_A 4die_A*
Probab=78.00 E-value=1.6 Score=41.67 Aligned_cols=26 Identities=15% Similarity=0.253 Sum_probs=20.3
Q ss_pred cCCEEEEEcCCCCcHHHHHHHHHHhc
Q 006122 64 THATTIIVGETGSGKTTQIPQYLKEA 89 (660)
Q Consensus 64 ~~~~vii~apTGsGKT~~ip~~l~~~ 89 (660)
..-++.|.||+||||||+.-.+....
T Consensus 8 ~~~~i~i~G~~GsGKsTla~~la~~l 33 (233)
T 3r20_A 8 GSLVVAVDGPAGTGKSSVSRGLARAL 33 (233)
T ss_dssp -CCEEEEECCTTSSHHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHh
Confidence 34579999999999999887665544
No 435
>3tmk_A Thymidylate kinase; phosphotransferase; HET: T5A; 2.00A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 2tmk_A* 1tmk_A*
Probab=77.91 E-value=1.4 Score=41.52 Aligned_cols=26 Identities=31% Similarity=0.285 Sum_probs=22.0
Q ss_pred cCCEEEEEcCCCCcHHHHHHHHHHhc
Q 006122 64 THATTIIVGETGSGKTTQIPQYLKEA 89 (660)
Q Consensus 64 ~~~~vii~apTGsGKT~~ip~~l~~~ 89 (660)
.+..+++.|+.||||||++..+....
T Consensus 4 ~g~~i~~eG~~g~GKst~~~~l~~~l 29 (216)
T 3tmk_A 4 RGKLILIEGLDRTGKTTQCNILYKKL 29 (216)
T ss_dssp CCCEEEEEECSSSSHHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHh
Confidence 57789999999999999998766554
No 436
>1pui_A ENGB, probable GTP-binding protein ENGB; structural genomics, nysgxrc T16, GTPase, PSI, protein structure initiative; 2.00A {Escherichia coli} SCOP: c.37.1.8
Probab=77.87 E-value=0.74 Score=42.81 Aligned_cols=23 Identities=17% Similarity=0.403 Sum_probs=18.6
Q ss_pred hcCCEEEEEcCCCCcHHHHHHHH
Q 006122 63 ETHATTIIVGETGSGKTTQIPQY 85 (660)
Q Consensus 63 ~~~~~vii~apTGsGKT~~ip~~ 85 (660)
..+..+++.|++|+||||++-.+
T Consensus 24 ~~~~~v~lvG~~g~GKSTLl~~l 46 (210)
T 1pui_A 24 DTGIEVAFAGRSNAGKSSALNTL 46 (210)
T ss_dssp SCSEEEEEEECTTSSHHHHHTTT
T ss_pred CCCcEEEEECCCCCCHHHHHHHH
Confidence 35667999999999999887543
No 437
>3oiy_A Reverse gyrase helicase domain; topoisomerase, DNA supercoiling, archaea, isomeras; 2.35A {Thermotoga maritima} PDB: 3p4y_A 3p4x_A*
Probab=77.82 E-value=2.5 Score=43.93 Aligned_cols=79 Identities=13% Similarity=0.178 Sum_probs=60.3
Q ss_pred CCCCcEEEEcCCHHHHHHHHHHHHHHhhhccCCCCCeEEEEccCCCCHHHHhhhcCCCCCCCcEEEEeCCCcc----ccc
Q 006122 274 EPPGDILVFLTGQDDIDATIQLLTEEARTSKKNSSGLIILPLYSGLSRAEQEQVFSPTPRGKRKVVISTNIAE----TSL 349 (660)
Q Consensus 274 ~~~~~iLVF~~~~~~i~~l~~~L~~~~~~~~~~~~~~~v~~lh~~l~~~~r~~v~~~f~~g~~~vlvaT~i~e----~Gi 349 (660)
..++.+||.+|+++-+...++.+.+... .++.+..+||+.+..++....+.+..|..+|+|+|.-.- .-+
T Consensus 62 ~~~~~~lil~Pt~~L~~q~~~~~~~~~~------~~~~v~~~~g~~~~~~~~~~~~~l~~~~~~Iiv~Tp~~l~~~l~~~ 135 (414)
T 3oiy_A 62 RKGKKSALVFPTVTLVKQTLERLQKLAD------EKVKIFGFYSSMKKEEKEKFEKSFEEDDYHILVFSTQFVSKNREKL 135 (414)
T ss_dssp TTTCCEEEEESSHHHHHHHHHHHHHHCC------SSCCEEECCTTSCHHHHHHHHHHHHHTCCSEEEEEHHHHHHCHHHH
T ss_pred cCCCEEEEEECCHHHHHHHHHHHHHHcc------CCceEEEEECCCChhhHHHHHHHhhcCCCCEEEECHHHHHHHHHHh
Confidence 4567899999999999999999887531 477899999999997777666666677789999996321 124
Q ss_pred CCCCeEEEE
Q 006122 350 TLEGIVYVV 358 (660)
Q Consensus 350 dip~v~~VI 358 (660)
+..++.+||
T Consensus 136 ~~~~~~~iV 144 (414)
T 3oiy_A 136 SQKRFDFVF 144 (414)
T ss_dssp TTCCCSEEE
T ss_pred ccccccEEE
Confidence 555677766
No 438
>3hjn_A DTMP kinase, thymidylate kinase; ATP-binding, nucleotide biosynth nucleotide-binding, transferase, structural genomics; HET: ADP TYD; 2.10A {Thermotoga maritima}
Probab=77.44 E-value=2.3 Score=39.40 Aligned_cols=36 Identities=33% Similarity=0.375 Sum_probs=23.7
Q ss_pred EEEEcCCCCcHHHHHHHHHHhccccCCCeEEEEeCch
Q 006122 68 TIIVGETGSGKTTQIPQYLKEAGWADGGRVIACTQPR 104 (660)
Q Consensus 68 vii~apTGsGKT~~ip~~l~~~~~~~~~~~i~v~p~r 104 (660)
+++.|.-|||||||+-.+.... ...+..++..-.|.
T Consensus 3 I~~EG~DGsGKsTq~~~L~~~L-~~~g~~v~~treP~ 38 (197)
T 3hjn_A 3 ITFEGIDGSGKSTQIQLLAQYL-EKRGKKVILKREPG 38 (197)
T ss_dssp EEEECSTTSSHHHHHHHHHHHH-HHTTCCEEEEESSC
T ss_pred EEEECCCCCCHHHHHHHHHHHH-HHCCCcEEEEECCC
Confidence 6789999999999987654332 22344555555553
No 439
>1lw7_A Transcriptional regulator NADR; NMN, NMN adenylyl transferase, ribosylnicotinamide KINA transferase; HET: NAD; 2.90A {Haemophilus influenzae} SCOP: c.26.1.3 c.37.1.1
Probab=77.06 E-value=1.2 Score=45.86 Aligned_cols=27 Identities=22% Similarity=0.311 Sum_probs=22.2
Q ss_pred Hhc--CCEEEEEcCCCCcHHHHHHHHHHh
Q 006122 62 VET--HATTIIVGETGSGKTTQIPQYLKE 88 (660)
Q Consensus 62 l~~--~~~vii~apTGsGKT~~ip~~l~~ 88 (660)
+.. ++.+.|.||+||||||++-.+...
T Consensus 165 v~~~lg~k~~IvG~nGsGKSTLlk~L~gl 193 (365)
T 1lw7_A 165 ARPFFAKTVAILGGESSGKSVLVNKLAAV 193 (365)
T ss_dssp TGGGTCEEEEEECCTTSHHHHHHHHHHHH
T ss_pred HHHhhhCeEEEECCCCCCHHHHHHHHHHH
Confidence 456 778999999999999998876544
No 440
>3qkt_A DNA double-strand break repair RAD50 ATPase; RECA-like fold, coiled-coils, ATP binding, DNA bindi MRE11, replication; HET: DNA ANP; 1.90A {Pyrococcus furiosus} PDB: 3qku_A* 1ii8_A 3qks_B* 3qkr_B* 1ii8_B
Probab=76.97 E-value=1.3 Score=44.92 Aligned_cols=22 Identities=32% Similarity=0.678 Sum_probs=18.0
Q ss_pred CCEEEEEcCCCCcHHHHHHHHH
Q 006122 65 HATTIIVGETGSGKTTQIPQYL 86 (660)
Q Consensus 65 ~~~vii~apTGsGKT~~ip~~l 86 (660)
....+|+||+|+|||+++-.+.
T Consensus 23 ~~~~~i~G~NGsGKS~lleAi~ 44 (339)
T 3qkt_A 23 EGINLIIGQNGSGKSSLLDAIL 44 (339)
T ss_dssp SEEEEEECCTTSSHHHHHHHHH
T ss_pred CCeEEEECCCCCCHHHHHHHHH
Confidence 3578999999999998887543
No 441
>3b60_A Lipid A export ATP-binding/permease protein MSBA; ABC transporter, lipid flippase, hydrolase, inner membrane, lipid transport, membrane; HET: ANP; 3.70A {Salmonella typhimurium} SCOP: c.37.1.12 f.37.1.1 PDB: 3b5y_A* 3b5z_A* 3b5w_A
Probab=76.94 E-value=0.98 Score=49.75 Aligned_cols=25 Identities=32% Similarity=0.456 Sum_probs=21.5
Q ss_pred hcCCEEEEEcCCCCcHHHHHHHHHH
Q 006122 63 ETHATTIIVGETGSGKTTQIPQYLK 87 (660)
Q Consensus 63 ~~~~~vii~apTGsGKT~~ip~~l~ 87 (660)
..|+.+.|.||+||||||++-.+..
T Consensus 367 ~~G~~~~ivG~sGsGKSTLl~~l~g 391 (582)
T 3b60_A 367 PAGKTVALVGRSGSGKSTIASLITR 391 (582)
T ss_dssp CTTCEEEEEECTTSSHHHHHHHHTT
T ss_pred cCCCEEEEECCCCCCHHHHHHHHhh
Confidence 5789999999999999999876544
No 442
>2www_A Methylmalonic aciduria type A protein, mitochondrial; transport protein, nucleotide-binding; HET: GDP 2PE; 2.64A {Homo sapiens}
Probab=76.42 E-value=2.1 Score=43.68 Aligned_cols=25 Identities=28% Similarity=0.290 Sum_probs=20.6
Q ss_pred CCEEEEEcCCCCcHHHHHHHHHHhc
Q 006122 65 HATTIIVGETGSGKTTQIPQYLKEA 89 (660)
Q Consensus 65 ~~~vii~apTGsGKT~~ip~~l~~~ 89 (660)
...+.|.|++|+||||++-.++...
T Consensus 74 ~~~v~lvG~pgaGKSTLln~L~~~~ 98 (349)
T 2www_A 74 AFRVGLSGPPGAGKSTFIEYFGKML 98 (349)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHHHH
T ss_pred ceEEEEEcCCCCCHHHHHHHHHHHh
Confidence 4578999999999999998776543
No 443
>2v26_A Myosin VI; calmodulin-binding, nucleotide-binding, membrane, vanadate, transport, PRE- powerstroke, transition state, protein transport; HET: ADP; 1.75A {Sus scrofa} PDB: 2bki_A 2bkh_A 3l9i_A 2x51_A 2vb6_A* 2vas_A*
Probab=76.41 E-value=3.7 Score=46.49 Aligned_cols=53 Identities=17% Similarity=0.225 Sum_probs=35.6
Q ss_pred ccCCCC-CCCccchHhHHHH--hcCCC--cHHHHHHHHHHH---hcCCEEEEEcCCCCcHH
Q 006122 27 SSLSSA-SSIGYGYASIEKQ--RQRLP--VYKYRTAILYLV---ETHATTIIVGETGSGKT 79 (660)
Q Consensus 27 ~~~~~~-~~~~~~~~~~~~~--~~~lP--i~~~~~~i~~~l---~~~~~vii~apTGsGKT 79 (660)
++|..+ |+-++......+. +..+| +|+.-+.....+ ..+|.+||+|++|+|||
T Consensus 94 NPyk~l~~iY~~~~~~~Y~g~~~~~~pPHifaiA~~Ay~~m~~~~~nQsIiiSGESGAGKT 154 (784)
T 2v26_A 94 NPYFDIPKIYSSETIKSYQGKSLGTMPPHVFAIADKAFRDMKVLKLSQSIIVSGESGAGKT 154 (784)
T ss_dssp CCSSCCTTTTSHHHHHHHTTCCTTSSCSCHHHHHHHHHHHHHHHTCCEEEEEECSTTSSHH
T ss_pred cCCcCcCCCCCHHHHHHHhCCCcccCCchHHHHHHHHHHHHHhcCCCcEEEEcCCCCCCce
Confidence 457777 4555444333322 23466 677777777666 35789999999999999
No 444
>2grj_A Dephospho-COA kinase; TM1387, EC 2.7.1.24, dephosphocoenzyme kinase, structural genomics, joint center for structural GE JCSG; HET: ADP COD; 2.60A {Thermotoga maritima}
Probab=76.36 E-value=1.6 Score=40.34 Aligned_cols=23 Identities=22% Similarity=0.310 Sum_probs=18.3
Q ss_pred CEEEEEcCCCCcHHHHHHHHHHh
Q 006122 66 ATTIIVGETGSGKTTQIPQYLKE 88 (660)
Q Consensus 66 ~~vii~apTGsGKT~~ip~~l~~ 88 (660)
-++.|+|+.||||||+.-.+...
T Consensus 13 ~iIgltG~~GSGKSTva~~L~~~ 35 (192)
T 2grj_A 13 MVIGVTGKIGTGKSTVCEILKNK 35 (192)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHh
Confidence 36788999999999888766543
No 445
>1um8_A ATP-dependent CLP protease ATP-binding subunit CL; CLPP binding loop, chaperone; HET: ADP; 2.60A {Helicobacter pylori} SCOP: c.37.1.20
Probab=76.34 E-value=1.6 Score=45.02 Aligned_cols=25 Identities=32% Similarity=0.506 Sum_probs=19.6
Q ss_pred CCEEEEEcCCCCcHHHHHHHHHHhc
Q 006122 65 HATTIIVGETGSGKTTQIPQYLKEA 89 (660)
Q Consensus 65 ~~~vii~apTGsGKT~~ip~~l~~~ 89 (660)
...+++.||+|+|||+++-.+....
T Consensus 72 ~~~ill~Gp~GtGKT~la~~la~~l 96 (376)
T 1um8_A 72 KSNILLIGPTGSGKTLMAQTLAKHL 96 (376)
T ss_dssp CCCEEEECCTTSSHHHHHHHHHHHT
T ss_pred CCCEEEECCCCCCHHHHHHHHHHHh
Confidence 4579999999999997776555443
No 446
>2dfs_A Myosin-5A; myosin-V, inhibited state, cryoelectron tomograp contractIle protein-transport protein complex; 24.00A {Gallus gallus}
Probab=76.18 E-value=3.3 Score=48.78 Aligned_cols=53 Identities=17% Similarity=0.270 Sum_probs=36.3
Q ss_pred ccCCCCCCCccchHhHHHH--hcCCC--cHHHHHHHHHHH---hcCCEEEEEcCCCCcHH
Q 006122 27 SSLSSASSIGYGYASIEKQ--RQRLP--VYKYRTAILYLV---ETHATTIIVGETGSGKT 79 (660)
Q Consensus 27 ~~~~~~~~~~~~~~~~~~~--~~~lP--i~~~~~~i~~~l---~~~~~vii~apTGsGKT 79 (660)
+||..+|+.++........ +..+| +|+.-+.....+ ..++.+||+|++|+|||
T Consensus 111 NPyk~l~iy~~~~~~~Y~~~~~~~~pPHifaiA~~Ay~~m~~~~~~QsIiisGESGAGKT 170 (1080)
T 2dfs_A 111 NPYEQLPIYGEDIINAYSGQNMGDMDPHIFAVAEEAYKQMARDERNQSIIVSGESGAGKT 170 (1080)
T ss_dssp CCSSCCSCSSHHHHHHHTTCCGGGSCCCHHHHHHHHHHHHHHHTCCEEEEEECSTTSSHH
T ss_pred cCCcccccCCHHHHHHhcCCCCCCCCCcHHHHHHHHHHHHHhcCCCcEEEEcCCCCCCcc
Confidence 4677777666554333322 23455 677777777666 35789999999999999
No 447
>1ltq_A Polynucleotide kinase; phosphatase, alpha/beta, P-loop, transferase; HET: ADP; 2.33A {Enterobacteria phage T4} SCOP: c.108.1.9 c.37.1.1 PDB: 1rc8_A* 1rpz_A* 1rrc_A* 2ia5_A
Probab=76.11 E-value=1.5 Score=43.48 Aligned_cols=22 Identities=27% Similarity=0.528 Sum_probs=18.4
Q ss_pred CEEEEEcCCCCcHHHHHHHHHH
Q 006122 66 ATTIIVGETGSGKTTQIPQYLK 87 (660)
Q Consensus 66 ~~vii~apTGsGKT~~ip~~l~ 87 (660)
..+++.|++||||||+.-.+..
T Consensus 3 ~~I~l~G~~GsGKST~a~~L~~ 24 (301)
T 1ltq_A 3 KIILTIGCPGSGKSTWAREFIA 24 (301)
T ss_dssp EEEEEECCTTSSHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHH
Confidence 3689999999999998876654
No 448
>1g8x_A Myosin II heavy chain fused to alpha-actinin 3; motor, lever ARM, protein engineering, structural protein; HET: ADP; 2.80A {Dictyostelium discoideum} SCOP: k.1.1.1
Probab=76.04 E-value=3.2 Score=48.49 Aligned_cols=54 Identities=19% Similarity=0.312 Sum_probs=37.2
Q ss_pred cccCCCCCCCccchHhHHHH--hcCCC--cHHHHHHHHHHH---hcCCEEEEEcCCCCcHH
Q 006122 26 SSSLSSASSIGYGYASIEKQ--RQRLP--VYKYRTAILYLV---ETHATTIIVGETGSGKT 79 (660)
Q Consensus 26 ~~~~~~~~~~~~~~~~~~~~--~~~lP--i~~~~~~i~~~l---~~~~~vii~apTGsGKT 79 (660)
-+||..+|+-++........ +..+| +|+.-+.....+ ..++.+||+|++|+|||
T Consensus 126 vNPyk~l~iy~~~~~~~Y~~~~~~~~pPHifaiA~~Ay~~m~~~~~~QsIiisGESGAGKT 186 (1010)
T 1g8x_A 126 VNPFKRIPIYTQEMVDIFKGRRRNEVAPHIFAISDVAYRSMLDDRQNQSLLITGESGAGKT 186 (1010)
T ss_dssp ECCSSCCSCCSHHHHHHHTTCCTTTSCCCHHHHHHHHHHHHHHHTCCEEEEEEESTTSSHH
T ss_pred ecCCccccCCCHHHHHHhcCCCccCCCccHHHHHHHHHHHHHhcCCCeEEEEeCCCCCCcc
Confidence 35688888666654443332 23455 667667776665 35788999999999999
No 449
>3qf4_A ABC transporter, ATP-binding protein; multidrug transporter, transport protein; HET: ANP; 2.90A {Thermotoga maritima}
Probab=75.99 E-value=0.93 Score=49.94 Aligned_cols=25 Identities=32% Similarity=0.497 Sum_probs=21.2
Q ss_pred hcCCEEEEEcCCCCcHHHHHHHHHH
Q 006122 63 ETHATTIIVGETGSGKTTQIPQYLK 87 (660)
Q Consensus 63 ~~~~~vii~apTGsGKT~~ip~~l~ 87 (660)
..++.+.|+||+||||||++-.+..
T Consensus 367 ~~Ge~~~ivG~sGsGKSTll~~l~g 391 (587)
T 3qf4_A 367 KPGSLVAVLGETGSGKSTLMNLIPR 391 (587)
T ss_dssp CTTCEEEEECSSSSSHHHHHHTTTT
T ss_pred cCCCEEEEECCCCCCHHHHHHHHhC
Confidence 5789999999999999999875543
No 450
>2c9o_A RUVB-like 1; hexameric helicase, AAA+-ATPase, ATP-binding, chromatin regulator, growth regulation, hydrolase, nuclear protein, DNA recombination; HET: ADP; 2.2A {Homo sapiens} PDB: 2xsz_A*
Probab=75.93 E-value=2.5 Score=44.78 Aligned_cols=24 Identities=25% Similarity=0.418 Sum_probs=19.3
Q ss_pred CEEEEEcCCCCcHHHHHHHHHHhc
Q 006122 66 ATTIIVGETGSGKTTQIPQYLKEA 89 (660)
Q Consensus 66 ~~vii~apTGsGKT~~ip~~l~~~ 89 (660)
..+++.||+|+|||+++-.+....
T Consensus 64 ~~iLl~GppGtGKT~la~ala~~l 87 (456)
T 2c9o_A 64 RAVLLAGPPGTGKTALALAIAQEL 87 (456)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHHH
T ss_pred CeEEEECCCcCCHHHHHHHHHHHh
Confidence 579999999999998776555543
No 451
>3qf4_B Uncharacterized ABC transporter ATP-binding prote TM_0288; multidrug transporter, transport protein; HET: ANP; 2.90A {Thermotoga maritima}
Probab=75.84 E-value=0.84 Score=50.44 Aligned_cols=26 Identities=35% Similarity=0.574 Sum_probs=21.9
Q ss_pred HhcCCEEEEEcCCCCcHHHHHHHHHH
Q 006122 62 VETHATTIIVGETGSGKTTQIPQYLK 87 (660)
Q Consensus 62 l~~~~~vii~apTGsGKT~~ip~~l~ 87 (660)
+..++.+.|.||+||||||++-.+..
T Consensus 378 i~~G~~~~ivG~sGsGKSTll~~l~g 403 (598)
T 3qf4_B 378 IKPGQKVALVGPTGSGKTTIVNLLMR 403 (598)
T ss_dssp CCTTCEEEEECCTTSSTTHHHHHHTT
T ss_pred EcCCCEEEEECCCCCcHHHHHHHHhc
Confidence 35789999999999999999876544
No 452
>2qag_B Septin-6, protein NEDD5; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens}
Probab=75.70 E-value=1.1 Score=46.81 Aligned_cols=27 Identities=33% Similarity=0.443 Sum_probs=21.6
Q ss_pred HHhcCCE--EEEEcCCCCcHHHHHHHHHH
Q 006122 61 LVETHAT--TIIVGETGSGKTTQIPQYLK 87 (660)
Q Consensus 61 ~l~~~~~--vii~apTGsGKT~~ip~~l~ 87 (660)
.+..|.. +.|.||+|+||||++-.+..
T Consensus 36 ~i~~Gei~~vaLvG~nGaGKSTLln~L~G 64 (427)
T 2qag_B 36 SVSQGFCFNILCVGETGLGKSTLMDTLFN 64 (427)
T ss_dssp SCC-CCEEEEEEECSTTSSSHHHHHHHHT
T ss_pred EecCCCeeEEEEECCCCCCHHHHHHHHhC
Confidence 3567888 99999999999999876643
No 453
>2dyk_A GTP-binding protein; GTPase, ribosome-binding protein, structural genomics; HET: GDP; 1.96A {Thermus thermophilus}
Probab=75.56 E-value=1.8 Score=37.87 Aligned_cols=22 Identities=32% Similarity=0.581 Sum_probs=18.6
Q ss_pred EEEEEcCCCCcHHHHHHHHHHh
Q 006122 67 TTIIVGETGSGKTTQIPQYLKE 88 (660)
Q Consensus 67 ~vii~apTGsGKT~~ip~~l~~ 88 (660)
.+++.|++|+|||+++-.+...
T Consensus 3 ki~v~G~~~~GKSsli~~l~~~ 24 (161)
T 2dyk_A 3 KVVIVGRPNVGKSSLFNRLLKK 24 (161)
T ss_dssp EEEEECCTTSSHHHHHHHHHHC
T ss_pred EEEEECCCCCCHHHHHHHHhCC
Confidence 4789999999999998877643
No 454
>2iut_A DNA translocase FTSK; nucleotide-binding, chromosome partition, ATP-binding, DNA- cell division, DNA translocation, KOPS, membrane; HET: DNA SAP; 2.25A {Pseudomonas aeruginosa} PDB: 2iuu_A*
Probab=75.11 E-value=2.6 Score=45.64 Aligned_cols=41 Identities=20% Similarity=0.347 Sum_probs=26.2
Q ss_pred cCCEEEEEcCCCCcHHHHHHHHHHhccc--cCCCeEEEEeCch
Q 006122 64 THATTIIVGETGSGKTTQIPQYLKEAGW--ADGGRVIACTQPR 104 (660)
Q Consensus 64 ~~~~vii~apTGsGKT~~ip~~l~~~~~--~~~~~~i~v~p~r 104 (660)
+..+++|.|.||||||+.+-.++..... .+..-.++++-|+
T Consensus 213 k~pHlLIaG~TGSGKS~~L~tlI~sLl~~~sP~ev~lilIDpK 255 (574)
T 2iut_A 213 KMPHLLVAGTTGSGKSVGVNAMLLSILFKSTPSEARLIMIDPK 255 (574)
T ss_dssp GSCCEEEECCTTSSHHHHHHHHHHHHHTTCCTTTEEEEEECSS
T ss_pred hCCeeEEECCCCCCHHHHHHHHHHHHHHhCCCcceEEEEeCCC
Confidence 4678999999999999777655554322 1222335555555
No 455
>1oix_A RAS-related protein RAB-11A; small G protein, intracellular trafficking, GTP-binding, lipoprotein, prenylation, protein transport; HET: GDP; 1.7A {Homo sapiens} SCOP: c.37.1.8 PDB: 1oiw_A* 1oiv_A* 3rwo_B* 3rwm_B*
Probab=75.07 E-value=1.6 Score=39.95 Aligned_cols=23 Identities=17% Similarity=0.693 Sum_probs=19.1
Q ss_pred EEEEEcCCCCcHHHHHHHHHHhc
Q 006122 67 TTIIVGETGSGKTTQIPQYLKEA 89 (660)
Q Consensus 67 ~vii~apTGsGKT~~ip~~l~~~ 89 (660)
.+++.|+.|+||||++-.+....
T Consensus 31 kv~lvG~~g~GKSTLl~~l~~~~ 53 (191)
T 1oix_A 31 KVVLIGDSGVGKSNLLSRFTRNE 53 (191)
T ss_dssp EEEEEECTTSSHHHHHHHHHHSC
T ss_pred EEEEECcCCCCHHHHHHHHhcCC
Confidence 47899999999999988776543
No 456
>2f9l_A RAB11B, member RAS oncogene family; RAB11B GTPase, vesicle transport, hydrolase; HET: GDP; 1.55A {Homo sapiens} SCOP: c.37.1.8 PDB: 2f9m_A* 1yzk_A* 2hv8_A* 2gzd_A* 2gzh_A* 2d7c_A* 3bfk_A*
Probab=74.99 E-value=1.6 Score=40.08 Aligned_cols=22 Identities=18% Similarity=0.724 Sum_probs=18.5
Q ss_pred EEEEEcCCCCcHHHHHHHHHHh
Q 006122 67 TTIIVGETGSGKTTQIPQYLKE 88 (660)
Q Consensus 67 ~vii~apTGsGKT~~ip~~l~~ 88 (660)
.+++.|++|+||||++-.+...
T Consensus 7 kv~lvG~~g~GKSTLl~~l~~~ 28 (199)
T 2f9l_A 7 KVVLIGDSGVGKSNLLSRFTRN 28 (199)
T ss_dssp EEEEESSTTSSHHHHHHHHHHS
T ss_pred EEEEECcCCCCHHHHHHHHhcC
Confidence 4789999999999998877654
No 457
>2ycu_A Non muscle myosin 2C, alpha-actinin; motor protein; HET: AOV; 2.25A {Homo sapiens} PDB: 1br1_A* 1br4_A* 1br2_A*
Probab=74.73 E-value=3.4 Score=48.19 Aligned_cols=54 Identities=19% Similarity=0.320 Sum_probs=37.4
Q ss_pred cccCCCCCCCccchHhHHHH--hcCCC--cHHHHHHHHHHH---hcCCEEEEEcCCCCcHH
Q 006122 26 SSSLSSASSIGYGYASIEKQ--RQRLP--VYKYRTAILYLV---ETHATTIIVGETGSGKT 79 (660)
Q Consensus 26 ~~~~~~~~~~~~~~~~~~~~--~~~lP--i~~~~~~i~~~l---~~~~~vii~apTGsGKT 79 (660)
-+||..+|+-++........ +..+| +|+.-+.....+ ..++.+||+|++|+|||
T Consensus 100 vNPyk~l~iy~~~~~~~Y~~~~~~~~pPHifaiA~~Ay~~m~~~~~~QsIiisGESGAGKT 160 (995)
T 2ycu_A 100 INPYKQLPIYTEAIVEMYRGKKRHEVPPHVYAVTEGAYRSMLQDREDQSILCTGESGAGKT 160 (995)
T ss_dssp ECCSSCCSCCSHHHHHHHTTCCGGGSCCCHHHHHHHHHHHHHHHCCCEEEEEECBTTSSHH
T ss_pred eCCccccCCCCHHHHHHhcCCccCCCCchHHHHhHHHHHHHHhcCCCcEEEecCCCCCCch
Confidence 35688888766654443332 23455 677777776666 35788999999999999
No 458
>1vec_A ATP-dependent RNA helicase P54; DEAD-box protein, RNA binding protein; HET: TLA; 2.01A {Homo sapiens} SCOP: c.37.1.19
Probab=74.43 E-value=10 Score=34.72 Aligned_cols=76 Identities=12% Similarity=0.130 Sum_probs=53.0
Q ss_pred CCCcEEEEcCCHHHHHHHHHHHHHHhhhccCCCCCeEEEEccCCCCHHHHhhhcCCCCCCCcEEEEeCCC-----cc-cc
Q 006122 275 PPGDILVFLTGQDDIDATIQLLTEEARTSKKNSSGLIILPLYSGLSRAEQEQVFSPTPRGKRKVVISTNI-----AE-TS 348 (660)
Q Consensus 275 ~~~~iLVF~~~~~~i~~l~~~L~~~~~~~~~~~~~~~v~~lh~~l~~~~r~~v~~~f~~g~~~vlvaT~i-----~e-~G 348 (660)
...++||.+|+++-++.+++.+.+... ..++..+..++|+.+..++...+. +..+|+|+|.- +. ..
T Consensus 70 ~~~~~lil~Pt~~L~~q~~~~~~~~~~----~~~~~~~~~~~g~~~~~~~~~~~~----~~~~i~v~T~~~l~~~~~~~~ 141 (206)
T 1vec_A 70 DNIQAMVIVPTRELALQVSQICIQVSK----HMGGAKVMATTGGTNLRDDIMRLD----DTVHVVIATPGRILDLIKKGV 141 (206)
T ss_dssp CSCCEEEECSCHHHHHHHHHHHHHHTT----TSSSCCEEEECSSSCHHHHHHHTT----SCCSEEEECHHHHHHHHHTTC
T ss_pred CCeeEEEEeCcHHHHHHHHHHHHHHHh----hcCCceEEEEeCCccHHHHHHhcC----CCCCEEEeCHHHHHHHHHcCC
Confidence 455799999999999998888877643 223677888999988766554432 35689999962 22 23
Q ss_pred cCCCCeEEEE
Q 006122 349 LTLEGIVYVV 358 (660)
Q Consensus 349 idip~v~~VI 358 (660)
+++.++++||
T Consensus 142 ~~~~~~~~lV 151 (206)
T 1vec_A 142 AKVDHVQMIV 151 (206)
T ss_dssp SCCTTCCEEE
T ss_pred cCcccCCEEE
Confidence 4566777665
No 459
>2r62_A Cell division protease FTSH homolog; ATPase domain, ATP-binding, cell CELL division, hydrolase, membrane, metal-binding; 3.30A {Helicobacter pylori} PDB: 2r65_A*
Probab=74.36 E-value=0.94 Score=44.11 Aligned_cols=25 Identities=32% Similarity=0.416 Sum_probs=19.4
Q ss_pred CCEEEEEcCCCCcHHHHHHHHHHhc
Q 006122 65 HATTIIVGETGSGKTTQIPQYLKEA 89 (660)
Q Consensus 65 ~~~vii~apTGsGKT~~ip~~l~~~ 89 (660)
...+++.||+|+|||+++-.+....
T Consensus 44 ~~~vll~G~~GtGKT~la~~la~~~ 68 (268)
T 2r62_A 44 PKGVLLVGPPGTGKTLLAKAVAGEA 68 (268)
T ss_dssp CSCCCCBCSSCSSHHHHHHHHHHHH
T ss_pred CceEEEECCCCCcHHHHHHHHHHHh
Confidence 3458999999999998877665543
No 460
>1z2a_A RAS-related protein RAB-23; RAB GTPase, vesicular trafficking, protein transport; HET: GDP; 1.90A {Mus musculus} SCOP: c.37.1.8 PDB: 1z22_A*
Probab=74.35 E-value=1.9 Score=37.88 Aligned_cols=22 Identities=32% Similarity=0.619 Sum_probs=18.6
Q ss_pred EEEEEcCCCCcHHHHHHHHHHh
Q 006122 67 TTIIVGETGSGKTTQIPQYLKE 88 (660)
Q Consensus 67 ~vii~apTGsGKT~~ip~~l~~ 88 (660)
.+++.|++|+|||+++-.+...
T Consensus 7 ~i~v~G~~~~GKssl~~~l~~~ 28 (168)
T 1z2a_A 7 KMVVVGNGAVGKSSMIQRYCKG 28 (168)
T ss_dssp EEEEECSTTSSHHHHHHHHHHC
T ss_pred EEEEECcCCCCHHHHHHHHHcC
Confidence 4789999999999998877643
No 461
>2ce2_X GTPase HRAS; signaling protein, guanine nucleotide binding protein, fluor membrane, lipoprotein, palmitate, prenylation; HET: GDP XY2; 1.0A {Homo sapiens} PDB: 2cl0_X* 2cl6_X* 2cl7_X* 2clc_X* 2evw_X* 2cld_X* 1aa9_A* 1ioz_A* 1q21_A* 6q21_A* 3k9l_A* 3k9n_A* 1ctq_A* 1bkd_R 1crp_A* 1crq_A* 1crr_A* 121p_A* 1gnp_A* 1gnq_A* ...
Probab=74.31 E-value=1.9 Score=37.74 Aligned_cols=22 Identities=27% Similarity=0.524 Sum_probs=18.5
Q ss_pred EEEEEcCCCCcHHHHHHHHHHh
Q 006122 67 TTIIVGETGSGKTTQIPQYLKE 88 (660)
Q Consensus 67 ~vii~apTGsGKT~~ip~~l~~ 88 (660)
.+++.|++|+|||+++-.+...
T Consensus 5 ~i~v~G~~~~GKssl~~~l~~~ 26 (166)
T 2ce2_X 5 KLVVVGAGGVGKSALTIQLIQN 26 (166)
T ss_dssp EEEEEESTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHhC
Confidence 4889999999999998877644
No 462
>1uj2_A Uridine-cytidine kinase 2; alpha/beta mononucleotide-binding HOLD, transferase; HET: C5P ADP; 1.80A {Homo sapiens} SCOP: c.37.1.6 PDB: 1uei_A* 1uej_A* 1udw_A 1ufq_A* 1xrj_A*
Probab=74.29 E-value=2.1 Score=41.23 Aligned_cols=24 Identities=21% Similarity=0.210 Sum_probs=18.9
Q ss_pred CEEEEEcCCCCcHHHHHHHHHHhc
Q 006122 66 ATTIIVGETGSGKTTQIPQYLKEA 89 (660)
Q Consensus 66 ~~vii~apTGsGKT~~ip~~l~~~ 89 (660)
.++.|.|+.||||||+.-.+....
T Consensus 23 ~iI~I~G~~GSGKST~a~~L~~~l 46 (252)
T 1uj2_A 23 FLIGVSGGTASGKSSVCAKIVQLL 46 (252)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHHT
T ss_pred EEEEEECCCCCCHHHHHHHHHHHh
Confidence 368899999999998887655433
No 463
>1yqt_A RNAse L inhibitor; ATP-binding cassette, ribosome biogenesis, hydrolyase/translation complex; HET: ADP; 1.90A {Pyrococcus furiosus}
Probab=74.28 E-value=1.4 Score=47.82 Aligned_cols=27 Identities=30% Similarity=0.416 Sum_probs=22.8
Q ss_pred HhcCCEEEEEcCCCCcHHHHHHHHHHh
Q 006122 62 VETHATTIIVGETGSGKTTQIPQYLKE 88 (660)
Q Consensus 62 l~~~~~vii~apTGsGKT~~ip~~l~~ 88 (660)
+..++.+.|.||+||||||++-.+.-.
T Consensus 44 i~~Ge~~~LvG~NGaGKSTLlk~l~Gl 70 (538)
T 1yqt_A 44 VKEGMVVGIVGPNGTGKSTAVKILAGQ 70 (538)
T ss_dssp CCTTSEEEEECCTTSSHHHHHHHHHTS
T ss_pred CCCCCEEEEECCCCCCHHHHHHHHhCC
Confidence 468899999999999999998766543
No 464
>2ged_A SR-beta, signal recognition particle receptor beta subunit; protein transport, G protein, proline isomerization, circular permutation; 2.20A {Saccharomyces cerevisiae}
Probab=74.16 E-value=1.9 Score=39.14 Aligned_cols=23 Identities=30% Similarity=0.479 Sum_probs=19.4
Q ss_pred CEEEEEcCCCCcHHHHHHHHHHh
Q 006122 66 ATTIIVGETGSGKTTQIPQYLKE 88 (660)
Q Consensus 66 ~~vii~apTGsGKT~~ip~~l~~ 88 (660)
-.+++.|++|+|||+++-.+...
T Consensus 49 ~~i~vvG~~g~GKSsll~~l~~~ 71 (193)
T 2ged_A 49 PSIIIAGPQNSGKTSLLTLLTTD 71 (193)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHS
T ss_pred CEEEEECCCCCCHHHHHHHHhcC
Confidence 46999999999999998877654
No 465
>3ake_A Cytidylate kinase; CMP kinase, CMP complex, open conformation, nucleotide metab transferase; HET: C5P; 1.50A {Thermus thermophilus} PDB: 3akc_A* 3akd_A*
Probab=73.67 E-value=2 Score=39.73 Aligned_cols=23 Identities=22% Similarity=0.254 Sum_probs=18.8
Q ss_pred EEEEEcCCCCcHHHHHHHHHHhc
Q 006122 67 TTIIVGETGSGKTTQIPQYLKEA 89 (660)
Q Consensus 67 ~vii~apTGsGKT~~ip~~l~~~ 89 (660)
++.|.|+.||||||+.-.+....
T Consensus 4 ~i~i~G~~GsGKst~~~~la~~l 26 (208)
T 3ake_A 4 IVTIDGPSASGKSSVARRVAAAL 26 (208)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHhc
Confidence 68899999999999887665443
No 466
>2yl4_A ATP-binding cassette SUB-family B member 10, mitochondrial; membrane protein, mitochondrial transport; HET: ACP LMT CDL 14Y; 2.85A {Homo sapiens} PDB: 4aa3_A*
Probab=73.61 E-value=1.1 Score=49.63 Aligned_cols=25 Identities=36% Similarity=0.608 Sum_probs=21.5
Q ss_pred hcCCEEEEEcCCCCcHHHHHHHHHH
Q 006122 63 ETHATTIIVGETGSGKTTQIPQYLK 87 (660)
Q Consensus 63 ~~~~~vii~apTGsGKT~~ip~~l~ 87 (660)
..|+.+.|.||+||||||++-.+..
T Consensus 368 ~~G~~~~ivG~sGsGKSTLl~~l~g 392 (595)
T 2yl4_A 368 PSGSVTALVGPSGSGKSTVLSLLLR 392 (595)
T ss_dssp CTTCEEEEECCTTSSSTHHHHHHTT
T ss_pred cCCCEEEEECCCCCCHHHHHHHHhc
Confidence 5789999999999999999876544
No 467
>1t6n_A Probable ATP-dependent RNA helicase; RECA-like fold, PRE-mRNA processing protein; HET: FLC; 1.94A {Homo sapiens} SCOP: c.37.1.19
Probab=73.58 E-value=7.1 Score=36.28 Aligned_cols=76 Identities=18% Similarity=0.221 Sum_probs=54.5
Q ss_pred CCcEEEEcCCHHHHHHHHHHHHHHhhhccCCCCCeEEEEccCCCCHHHHhhhcCCCCCCCcEEEEeCCC-----c-cccc
Q 006122 276 PGDILVFLTGQDDIDATIQLLTEEARTSKKNSSGLIILPLYSGLSRAEQEQVFSPTPRGKRKVVISTNI-----A-ETSL 349 (660)
Q Consensus 276 ~~~iLVF~~~~~~i~~l~~~L~~~~~~~~~~~~~~~v~~lh~~l~~~~r~~v~~~f~~g~~~vlvaT~i-----~-e~Gi 349 (660)
..++||.+|+++-++.+++.+.+... ..++..+..++|+.+..++...+. .+..+|+|+|.- + ...+
T Consensus 82 ~~~~lil~Pt~~L~~q~~~~~~~~~~----~~~~~~v~~~~g~~~~~~~~~~~~---~~~~~i~v~T~~~l~~~~~~~~~ 154 (220)
T 1t6n_A 82 QVSVLVMCHTRELAFQISKEYERFSK----YMPNVKVAVFFGGLSIKKDEEVLK---KNCPHIVVGTPGRILALARNKSL 154 (220)
T ss_dssp CCCEEEECSCHHHHHHHHHHHHHHTT----TSTTCCEEEESCCSCHHHHHHHHH---HSCCSEEEECHHHHHHHHHTTSS
T ss_pred CEEEEEEeCCHHHHHHHHHHHHHHHh----hCCCceEEEEeCCCChHHHHHHHh---cCCCCEEEeCHHHHHHHHHhCCC
Confidence 34799999999999998888877642 223678889999998776655443 345689999952 1 2345
Q ss_pred CCCCeEEEE
Q 006122 350 TLEGIVYVV 358 (660)
Q Consensus 350 dip~v~~VI 358 (660)
++.++++||
T Consensus 155 ~~~~~~~lV 163 (220)
T 1t6n_A 155 NLKHIKHFI 163 (220)
T ss_dssp CCTTCCEEE
T ss_pred CcccCCEEE
Confidence 677777766
No 468
>2obl_A ESCN; ATPase, hydrolase; 1.80A {Escherichia coli O127} PDB: 2obm_A*
Probab=73.31 E-value=1.5 Score=44.70 Aligned_cols=28 Identities=21% Similarity=0.183 Sum_probs=23.4
Q ss_pred HhcCCEEEEEcCCCCcHHHHHHHHHHhc
Q 006122 62 VETHATTIIVGETGSGKTTQIPQYLKEA 89 (660)
Q Consensus 62 l~~~~~vii~apTGsGKT~~ip~~l~~~ 89 (660)
+..++.+.|.||.|+||||++-.++...
T Consensus 68 i~~Gq~~gIiG~nGaGKTTLl~~I~g~~ 95 (347)
T 2obl_A 68 CGIGQRIGIFAGSGVGKSTLLGMICNGA 95 (347)
T ss_dssp EETTCEEEEEECTTSSHHHHHHHHHHHS
T ss_pred ecCCCEEEEECCCCCCHHHHHHHHhcCC
Confidence 4678999999999999999987666554
No 469
>1g8p_A Magnesium-chelatase 38 kDa subunit; parallel beta sheet, P-loop, rossman fold, AAA+, photosynthesis, metal transport; 2.10A {Rhodobacter capsulatus} SCOP: c.37.1.20 PDB: 2x31_G
Probab=73.29 E-value=2.1 Score=43.24 Aligned_cols=26 Identities=19% Similarity=0.377 Sum_probs=19.8
Q ss_pred cCCEEEEEcCCCCcHHHHHHHHHHhc
Q 006122 64 THATTIIVGETGSGKTTQIPQYLKEA 89 (660)
Q Consensus 64 ~~~~vii~apTGsGKT~~ip~~l~~~ 89 (660)
....+++.||+|+|||+++-.+....
T Consensus 44 ~~~~vLl~G~~GtGKT~la~~la~~~ 69 (350)
T 1g8p_A 44 GIGGVLVFGDRGTGKSTAVRALAALL 69 (350)
T ss_dssp GGCCEEEECCGGGCTTHHHHHHHHHS
T ss_pred CCceEEEECCCCccHHHHHHHHHHhC
Confidence 34569999999999998776555443
No 470
>2ocp_A DGK, deoxyguanosine kinase; protein-nucleotide complex, transferase; HET: DTP; 2.80A {Homo sapiens} SCOP: c.37.1.1
Probab=73.07 E-value=2.1 Score=40.97 Aligned_cols=25 Identities=24% Similarity=0.205 Sum_probs=19.9
Q ss_pred CCEEEEEcCCCCcHHHHHHHHHHhc
Q 006122 65 HATTIIVGETGSGKTTQIPQYLKEA 89 (660)
Q Consensus 65 ~~~vii~apTGsGKT~~ip~~l~~~ 89 (660)
+..+++.|+.||||||++-.+....
T Consensus 2 ~~~i~~~G~~g~GKtt~~~~l~~~l 26 (241)
T 2ocp_A 2 PRRLSIEGNIAVGKSTFVKLLTKTY 26 (241)
T ss_dssp CEEEEEEECTTSSHHHHHHHHHHHC
T ss_pred CeEEEEEcCCCCCHHHHHHHHHHHc
Confidence 3468999999999999987665543
No 471
>1ky3_A GTP-binding protein YPT7P; vesicular traffic, GTP hydrolysis, YPT/RAB protein, endocytosis, hydrolase, endocytosis/exocytosis complex; HET: GDP; 1.35A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1ky2_A*
Probab=73.05 E-value=2.2 Score=38.13 Aligned_cols=22 Identities=36% Similarity=0.826 Sum_probs=18.8
Q ss_pred EEEEEcCCCCcHHHHHHHHHHh
Q 006122 67 TTIIVGETGSGKTTQIPQYLKE 88 (660)
Q Consensus 67 ~vii~apTGsGKT~~ip~~l~~ 88 (660)
.+++.|++|+|||+++-.++..
T Consensus 10 ~i~v~G~~~~GKSsli~~l~~~ 31 (182)
T 1ky3_A 10 KVIILGDSGVGKTSLMHRYVND 31 (182)
T ss_dssp EEEEECCTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHhC
Confidence 5899999999999998877654
No 472
>2wsm_A Hydrogenase expression/formation protein (HYPB); metal binding protein; 2.30A {Archaeoglobus fulgidus}
Probab=73.05 E-value=3.6 Score=38.32 Aligned_cols=26 Identities=31% Similarity=0.424 Sum_probs=21.6
Q ss_pred cCCEEEEEcCCCCcHHHHHHHHHHhc
Q 006122 64 THATTIIVGETGSGKTTQIPQYLKEA 89 (660)
Q Consensus 64 ~~~~vii~apTGsGKT~~ip~~l~~~ 89 (660)
.-..+++.|++|+||||++-.++...
T Consensus 29 ~~~~i~i~G~~g~GKTTl~~~l~~~~ 54 (221)
T 2wsm_A 29 GTVAVNIMGAIGSGKTLLIERTIERI 54 (221)
T ss_dssp TCEEEEEEECTTSCHHHHHHHHHHHH
T ss_pred CceEEEEEcCCCCCHHHHHHHHHHHh
Confidence 34578999999999999998887664
No 473
>1yrb_A ATP(GTP)binding protein; GTPase, P-loop, rossman fold, GDP, HYDR; HET: GDP; 1.75A {Pyrococcus abyssi} SCOP: c.37.1.10 PDB: 1yr6_A* 1yr8_A* 1yr9_A* 1yra_A* 1yr7_A* 2oxr_A*
Probab=73.02 E-value=3.3 Score=39.87 Aligned_cols=33 Identities=30% Similarity=0.382 Sum_probs=24.1
Q ss_pred CEEEEEcCCCCcHHHHHHHHHHhccccCCCeEEEE
Q 006122 66 ATTIIVGETGSGKTTQIPQYLKEAGWADGGRVIAC 100 (660)
Q Consensus 66 ~~vii~apTGsGKT~~ip~~l~~~~~~~~~~~i~v 100 (660)
..+++.|..|+||||++-.+..... .+.++.++
T Consensus 15 ~i~~~~GkgGvGKTTl~~~La~~l~--~g~~v~vv 47 (262)
T 1yrb_A 15 MIVVFVGTAGSGKTTLTGEFGRYLE--DNYKVAYV 47 (262)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHHHT--TTSCEEEE
T ss_pred EEEEEeCCCCCCHHHHHHHHHHHHH--CCCeEEEE
Confidence 4688899999999999887776654 34444444
No 474
>1e69_A Chromosome segregation SMC protein; structural maintenance of chromosomes, coiled coil; 3.1A {Thermotoga maritima} SCOP: c.37.1.12
Probab=72.94 E-value=1.7 Score=43.81 Aligned_cols=22 Identities=41% Similarity=0.465 Sum_probs=18.5
Q ss_pred CEEEEEcCCCCcHHHHHHHHHH
Q 006122 66 ATTIIVGETGSGKTTQIPQYLK 87 (660)
Q Consensus 66 ~~vii~apTGsGKT~~ip~~l~ 87 (660)
...+|.||+|||||+++-.+..
T Consensus 25 g~~~i~G~NGsGKS~ll~ai~~ 46 (322)
T 1e69_A 25 RVTAIVGPNGSGKSNIIDAIKW 46 (322)
T ss_dssp SEEEEECCTTTCSTHHHHHHHH
T ss_pred CcEEEECCCCCcHHHHHHHHHH
Confidence 4899999999999988876543
No 475
>2wji_A Ferrous iron transport protein B homolog; membrane G-proteins, cell membrane, ION transport, transmembrane; HET: GNP; 1.90A {Methanocaldococcus jannaschii} PDB: 2wjj_A* 2wjh_A*
Probab=72.79 E-value=2.2 Score=37.76 Aligned_cols=21 Identities=19% Similarity=0.332 Sum_probs=18.0
Q ss_pred EEEEEcCCCCcHHHHHHHHHH
Q 006122 67 TTIIVGETGSGKTTQIPQYLK 87 (660)
Q Consensus 67 ~vii~apTGsGKT~~ip~~l~ 87 (660)
.+++.|++|+|||+++-.+..
T Consensus 5 ~v~lvG~~gvGKStL~~~l~~ 25 (165)
T 2wji_A 5 EIALIGNPNVGKSTIFNALTG 25 (165)
T ss_dssp EEEEECSTTSSHHHHHHHHHC
T ss_pred EEEEECCCCCCHHHHHHHHhC
Confidence 488999999999999887753
No 476
>1z0j_A RAB-22, RAS-related protein RAB-22A; RAB GTPase, RAB22 GTPase, rabenosyn, endosomal trafficking; HET: GTP; 1.32A {Mus musculus} SCOP: c.37.1.8 PDB: 1yvd_A*
Probab=72.75 E-value=2.3 Score=37.50 Aligned_cols=23 Identities=22% Similarity=0.621 Sum_probs=19.2
Q ss_pred EEEEEcCCCCcHHHHHHHHHHhc
Q 006122 67 TTIIVGETGSGKTTQIPQYLKEA 89 (660)
Q Consensus 67 ~vii~apTGsGKT~~ip~~l~~~ 89 (660)
.+++.|++|+|||+++-.++...
T Consensus 8 ~i~v~G~~~~GKSsli~~l~~~~ 30 (170)
T 1z0j_A 8 KVCLLGDTGVGKSSIMWRFVEDS 30 (170)
T ss_dssp EEEEECCTTSSHHHHHHHHHHSC
T ss_pred EEEEECcCCCCHHHHHHHHHcCC
Confidence 48899999999999988776543
No 477
>1ek0_A Protein (GTP-binding protein YPT51); vesicular traffic, GTP hydrolysis, YPT/RAB protein, endocytosis, hydrolase; HET: MHO GNP GDP; 1.48A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=72.64 E-value=2.2 Score=37.47 Aligned_cols=23 Identities=17% Similarity=0.546 Sum_probs=19.1
Q ss_pred EEEEEcCCCCcHHHHHHHHHHhc
Q 006122 67 TTIIVGETGSGKTTQIPQYLKEA 89 (660)
Q Consensus 67 ~vii~apTGsGKT~~ip~~l~~~ 89 (660)
.+++.|++|+|||+++-.++...
T Consensus 5 ~i~v~G~~~~GKssli~~l~~~~ 27 (170)
T 1ek0_A 5 KLVLLGEAAVGKSSIVLRFVSND 27 (170)
T ss_dssp EEEEECSTTSSHHHHHHHHHHSC
T ss_pred EEEEECCCCCCHHHHHHHHhcCC
Confidence 48899999999999988776543
No 478
>1kao_A RAP2A; GTP-binding protein, small G protein, GDP, RAS; HET: GDP; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2rap_A* 3rap_R*
Probab=72.63 E-value=2.3 Score=37.22 Aligned_cols=22 Identities=23% Similarity=0.549 Sum_probs=18.5
Q ss_pred EEEEEcCCCCcHHHHHHHHHHh
Q 006122 67 TTIIVGETGSGKTTQIPQYLKE 88 (660)
Q Consensus 67 ~vii~apTGsGKT~~ip~~l~~ 88 (660)
.+++.|++|+|||+++-.+...
T Consensus 5 ~i~v~G~~~~GKSsli~~l~~~ 26 (167)
T 1kao_A 5 KVVVLGSGGVGKSALTVQFVTG 26 (167)
T ss_dssp EEEEECCTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHcC
Confidence 4899999999999998776643
No 479
>2f6r_A COA synthase, bifunctional coenzyme A synthase; 18044849, bifunctional coenzyme A synthase (COA synthase), S genomics; HET: ACO UNL; 1.70A {Mus musculus}
Probab=72.63 E-value=2 Score=42.25 Aligned_cols=21 Identities=24% Similarity=0.298 Sum_probs=18.0
Q ss_pred CEEEEEcCCCCcHHHHHHHHH
Q 006122 66 ATTIIVGETGSGKTTQIPQYL 86 (660)
Q Consensus 66 ~~vii~apTGsGKT~~ip~~l 86 (660)
..++|+|+.||||||+.-.+.
T Consensus 76 ~iI~I~G~~GSGKSTva~~La 96 (281)
T 2f6r_A 76 YVLGLTGISGSGKSSVAQRLK 96 (281)
T ss_dssp EEEEEEECTTSCHHHHHHHHH
T ss_pred EEEEEECCCCCCHHHHHHHHH
Confidence 368999999999999887665
No 480
>1u8z_A RAS-related protein RAL-A; GNP, GTP, GMPPNP, GPPNHP, GDP, GTPase, signaling protein; HET: GDP; 1.50A {Saguinus oedipus} SCOP: c.37.1.8 PDB: 1u8y_A* 1u90_A* 1uad_A* 1zc3_A* 1zc4_A* 2kwi_A* 2ke5_A*
Probab=72.28 E-value=2.3 Score=37.23 Aligned_cols=22 Identities=32% Similarity=0.605 Sum_probs=18.6
Q ss_pred EEEEEcCCCCcHHHHHHHHHHh
Q 006122 67 TTIIVGETGSGKTTQIPQYLKE 88 (660)
Q Consensus 67 ~vii~apTGsGKT~~ip~~l~~ 88 (660)
.+++.|++|+|||+++-.+...
T Consensus 6 ~i~v~G~~~~GKssl~~~l~~~ 27 (168)
T 1u8z_A 6 KVIMVGSGGVGKSALTLQFMYD 27 (168)
T ss_dssp EEEEECSTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHhC
Confidence 4889999999999998877644
No 481
>1p5z_B DCK, deoxycytidine kinase; nucleoside kinase, P-loop, ARAC, cytarabine, transferase; HET: AR3 ADP; 1.60A {Homo sapiens} SCOP: c.37.1.1 PDB: 1p60_A* 1p61_B* 1p62_B* 2a7q_A* 2qrn_A* 2qro_A* 3exk_A* 3hp1_A* 2no7_A* 2no1_A* 2no6_A* 2no0_A* 2no9_A* 2noa_A* 2zi5_A* 2zi4_A* 2zi6_A* 2zi7_B* 2zia_A* 3kfx_A* ...
Probab=72.22 E-value=1.6 Score=42.32 Aligned_cols=23 Identities=22% Similarity=0.218 Sum_probs=19.0
Q ss_pred cCCEEEEEcCCCCcHHHHHHHHH
Q 006122 64 THATTIIVGETGSGKTTQIPQYL 86 (660)
Q Consensus 64 ~~~~vii~apTGsGKT~~ip~~l 86 (660)
....+++.|+.||||||++-.+.
T Consensus 23 ~~~~I~ieG~~GsGKST~~~~L~ 45 (263)
T 1p5z_B 23 RIKKISIEGNIAAGKSTFVNILK 45 (263)
T ss_dssp CCEEEEEECSTTSSHHHHHTTTG
T ss_pred CceEEEEECCCCCCHHHHHHHHH
Confidence 45678999999999999986544
No 482
>3fe2_A Probable ATP-dependent RNA helicase DDX5; DEAD, ADP, ATP-binding, hydrolase, nucleotide- RNA-binding, methylation, mRNA processing, mRNA S nucleus; HET: ADP; 2.60A {Homo sapiens} PDB: 4a4d_A
Probab=72.20 E-value=6.4 Score=37.39 Aligned_cols=75 Identities=20% Similarity=0.209 Sum_probs=54.8
Q ss_pred CCCcEEEEcCCHHHHHHHHHHHHHHhhhccCCCCCeEEEEccCCCCHHHHhhhcCCCCCCCcEEEEeCC-----Ccc-cc
Q 006122 275 PPGDILVFLTGQDDIDATIQLLTEEARTSKKNSSGLIILPLYSGLSRAEQEQVFSPTPRGKRKVVISTN-----IAE-TS 348 (660)
Q Consensus 275 ~~~~iLVF~~~~~~i~~l~~~L~~~~~~~~~~~~~~~v~~lh~~l~~~~r~~v~~~f~~g~~~vlvaT~-----i~e-~G 348 (660)
.++.+||.+|+++-++.+++.+.+.... .++.+..++|+.+..++...+.. ..+|+|+|. .+. ..
T Consensus 101 ~~~~~lil~Pt~~L~~Q~~~~~~~~~~~-----~~~~~~~~~g~~~~~~~~~~~~~----~~~I~v~Tp~~l~~~l~~~~ 171 (242)
T 3fe2_A 101 DGPICLVLAPTRELAQQVQQVAAEYCRA-----CRLKSTCIYGGAPKGPQIRDLER----GVEICIATPGRLIDFLECGK 171 (242)
T ss_dssp CCCSEEEECSSHHHHHHHHHHHHHHHHH-----TTCCEEEECTTSCHHHHHHHHHH----CCSEEEECHHHHHHHHHHTS
T ss_pred CCCEEEEEeCcHHHHHHHHHHHHHHHhh-----cCceEEEEECCCChHHHHHHhcC----CCCEEEECHHHHHHHHHcCC
Confidence 3567999999999999988888776533 25678889999988777655532 367999995 222 24
Q ss_pred cCCCCeEEEE
Q 006122 349 LTLEGIVYVV 358 (660)
Q Consensus 349 idip~v~~VI 358 (660)
+++.++.+||
T Consensus 172 ~~~~~~~~lV 181 (242)
T 3fe2_A 172 TNLRRTTYLV 181 (242)
T ss_dssp CCCTTCCEEE
T ss_pred CCcccccEEE
Confidence 5677888766
No 483
>3zvl_A Bifunctional polynucleotide phosphatase/kinase; hydrolase-transferase complex, base excision repair, BER, non-homologous END-joining, NHEJ; 1.65A {Mus musculus} PDB: 3zvm_A* 3zvn_A* 1yj5_A 3u7e_B* 3u7f_B* 3u7h_B* 3u7g_A*
Probab=72.02 E-value=2.2 Score=44.66 Aligned_cols=25 Identities=32% Similarity=0.436 Sum_probs=20.1
Q ss_pred cCCEEEEEcCCCCcHHHHHHHHHHh
Q 006122 64 THATTIIVGETGSGKTTQIPQYLKE 88 (660)
Q Consensus 64 ~~~~vii~apTGsGKT~~ip~~l~~ 88 (660)
....++++|+.||||||+.-.+...
T Consensus 257 ~~~lIil~G~pGSGKSTla~~L~~~ 281 (416)
T 3zvl_A 257 NPEVVVAVGFPGAGKSTFIQEHLVS 281 (416)
T ss_dssp SCCEEEEESCTTSSHHHHHHHHTGG
T ss_pred CCEEEEEECCCCCCHHHHHHHHHHh
Confidence 3468999999999999988766543
No 484
>1q3t_A Cytidylate kinase; nucleotide monophosphate kinase, CMP kinase, transferase; NMR {Streptococcus pneumoniae} SCOP: c.37.1.1
Probab=72.00 E-value=2.7 Score=39.93 Aligned_cols=26 Identities=27% Similarity=0.241 Sum_probs=20.6
Q ss_pred cCCEEEEEcCCCCcHHHHHHHHHHhc
Q 006122 64 THATTIIVGETGSGKTTQIPQYLKEA 89 (660)
Q Consensus 64 ~~~~vii~apTGsGKT~~ip~~l~~~ 89 (660)
.+..+.|.|+.||||||+.-.+....
T Consensus 15 ~~~~i~i~G~~gsGKst~~~~l~~~l 40 (236)
T 1q3t_A 15 KTIQIAIDGPASSGKSTVAKIIAKDF 40 (236)
T ss_dssp CCCEEEEECSSCSSHHHHHHHHHHHH
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHc
Confidence 45679999999999999887665433
No 485
>1g16_A RAS-related protein SEC4; G protein RAB, signaling protein, endocytosis/exocytosis complex; HET: GDP; 1.80A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1g17_A* 2ocy_C 2eqb_A
Probab=71.97 E-value=2.3 Score=37.49 Aligned_cols=22 Identities=18% Similarity=0.714 Sum_probs=18.5
Q ss_pred EEEEEcCCCCcHHHHHHHHHHh
Q 006122 67 TTIIVGETGSGKTTQIPQYLKE 88 (660)
Q Consensus 67 ~vii~apTGsGKT~~ip~~l~~ 88 (660)
.+++.|++|+|||+++-.+...
T Consensus 5 ~i~v~G~~~~GKssli~~l~~~ 26 (170)
T 1g16_A 5 KILLIGDSGVGKSCLLVRFVED 26 (170)
T ss_dssp EEEEEESTTSSHHHHHHHHHHC
T ss_pred EEEEECcCCCCHHHHHHHHHhC
Confidence 4789999999999998877643
No 486
>1g41_A Heat shock protein HSLU; AAA-ATPase, CLPY, ATP-dependent proteolysis, chaperone; HET: ADP; 2.30A {Haemophilus influenzae} SCOP: c.37.1.20 PDB: 1g3i_A* 1im2_A* 1kyi_A* 1g4a_E* 1g4b_E 1yyf_A* 1do0_A* 1do2_A* 1e94_E* 1hqy_E* 1ht1_E* 1ht2_E*
Probab=71.95 E-value=3.5 Score=43.37 Aligned_cols=25 Identities=32% Similarity=0.437 Sum_probs=19.7
Q ss_pred CCEEEEEcCCCCcHHHHHHHHHHhc
Q 006122 65 HATTIIVGETGSGKTTQIPQYLKEA 89 (660)
Q Consensus 65 ~~~vii~apTGsGKT~~ip~~l~~~ 89 (660)
..++++.||+|+|||+++-.+....
T Consensus 50 ~~~iLl~GppGtGKT~lar~lA~~l 74 (444)
T 1g41_A 50 PKNILMIGPTGVGKTEIARRLAKLA 74 (444)
T ss_dssp CCCEEEECCTTSSHHHHHHHHHHHT
T ss_pred CceEEEEcCCCCCHHHHHHHHHHHc
Confidence 3579999999999998776655544
No 487
>2erx_A GTP-binding protein DI-RAS2; GTP hydrolysis, transport protein; HET: GDP; 1.65A {Homo sapiens} SCOP: c.37.1.8
Probab=71.67 E-value=2.5 Score=37.27 Aligned_cols=21 Identities=24% Similarity=0.586 Sum_probs=18.0
Q ss_pred EEEEEcCCCCcHHHHHHHHHH
Q 006122 67 TTIIVGETGSGKTTQIPQYLK 87 (660)
Q Consensus 67 ~vii~apTGsGKT~~ip~~l~ 87 (660)
.+++.|++|+|||+++-.++.
T Consensus 5 ~i~v~G~~~~GKssli~~l~~ 25 (172)
T 2erx_A 5 RVAVFGAGGVGKSSLVLRFVK 25 (172)
T ss_dssp EEEEECCTTSSHHHHHHHHHT
T ss_pred EEEEECCCCCCHHHHHHHHHc
Confidence 488999999999999877764
No 488
>1svi_A GTP-binding protein YSXC; ENGB, GTPase, GDP, hydrolase; HET: GDP; 1.95A {Bacillus subtilis} SCOP: c.37.1.8 PDB: 1sul_A* 1svw_A*
Probab=71.58 E-value=2.1 Score=38.88 Aligned_cols=23 Identities=17% Similarity=0.361 Sum_probs=19.1
Q ss_pred CCEEEEEcCCCCcHHHHHHHHHH
Q 006122 65 HATTIIVGETGSGKTTQIPQYLK 87 (660)
Q Consensus 65 ~~~vii~apTGsGKT~~ip~~l~ 87 (660)
.-.+++.|++|+|||+++-.++.
T Consensus 23 ~~~i~v~G~~~~GKSsli~~l~~ 45 (195)
T 1svi_A 23 LPEIALAGRSNVGKSSFINSLIN 45 (195)
T ss_dssp CCEEEEEEBTTSSHHHHHHHHHT
T ss_pred CCEEEEECCCCCCHHHHHHHHhC
Confidence 34699999999999999877653
No 489
>1m8p_A Sulfate adenylyltransferase; rossmann fold, phosphosulfate binding, T-state; HET: PPS; 2.60A {Penicillium chrysogenum} SCOP: b.122.1.3 c.26.1.5 c.37.1.15 PDB: 1i2d_A*
Probab=71.57 E-value=3.5 Score=45.10 Aligned_cols=58 Identities=12% Similarity=0.137 Sum_probs=37.4
Q ss_pred CCCCCccchHhHHHHhcCCCcHHHHHHHHHHHhcC--------CEEEEEcCCCCcHHHHHHHHHHh
Q 006122 31 SASSIGYGYASIEKQRQRLPVYKYRTAILYLVETH--------ATTIIVGETGSGKTTQIPQYLKE 88 (660)
Q Consensus 31 ~~~~~~~~~~~~~~~~~~lPi~~~~~~i~~~l~~~--------~~vii~apTGsGKT~~ip~~l~~ 88 (660)
..++|+-..+.+.......|.+..+.++...++.. .++++.|..||||||+.-.+...
T Consensus 354 ~~~iSgt~ir~~l~~g~~~p~w~~~~eVsr~lRe~~~~~gq~~~~I~l~GlsGSGKSTiA~~La~~ 419 (573)
T 1m8p_A 354 TLNISGTELRRRLRSGAHIPEWFSYPEVVKILRESNPPRATQGFTIFLTGYMNSGKDAIARALQVT 419 (573)
T ss_dssp CBCCCHHHHHHHHHHTCCCCTTTSCHHHHHHHHTTSCCTTTCCEEEEEECSTTSSHHHHHHHHHHH
T ss_pred eecCChHHHHHHHhccCCCCcccccccccHHHHHhcccccccceEEEeecCCCCCHHHHHHHHHHH
Confidence 34566666666666556666544434444444432 36889999999999887665444
No 490
>1wms_A RAB-9, RAB9, RAS-related protein RAB-9A; GTPase, protein transport; HET: GDP; 1.25A {Homo sapiens} SCOP: c.37.1.8 PDB: 1s8f_A* 1yzl_A* 2ocb_A*
Probab=71.53 E-value=2.5 Score=37.62 Aligned_cols=22 Identities=27% Similarity=0.718 Sum_probs=18.7
Q ss_pred EEEEEcCCCCcHHHHHHHHHHh
Q 006122 67 TTIIVGETGSGKTTQIPQYLKE 88 (660)
Q Consensus 67 ~vii~apTGsGKT~~ip~~l~~ 88 (660)
.+++.|++|+|||+++-.++..
T Consensus 9 ~i~v~G~~~~GKSsli~~l~~~ 30 (177)
T 1wms_A 9 KVILLGDGGVGKSSLMNRYVTN 30 (177)
T ss_dssp EEEEECCTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHcC
Confidence 4899999999999998877643
No 491
>2d7d_A Uvrabc system protein B; helicase, protein-DNA-ADP ternary complex, hydrolase/DNA complex; HET: ADP; 2.10A {Bacillus subtilis} PDB: 2nmv_A* 2fdc_A* 1t5l_A 3uwx_B 1d9z_A* 1d9x_A 2d7d_B* 2nmv_B*
Probab=71.52 E-value=7.6 Score=43.24 Aligned_cols=58 Identities=22% Similarity=0.328 Sum_probs=39.1
Q ss_pred HHHHHhcCC-EEEEEcCCCCcHHHHHHHHHHhccccCCCeEEEEeCchHHHHHHHHHHHHHHhC
Q 006122 58 ILYLVETHA-TTIIVGETGSGKTTQIPQYLKEAGWADGGRVIACTQPRRLAVQAVASRVAEEMG 120 (660)
Q Consensus 58 i~~~l~~~~-~vii~apTGsGKT~~ip~~l~~~~~~~~~~~i~v~p~r~la~~~~~~~~~~~~~ 120 (660)
+.+.+..+. ...+.|-||||||+.+..++... +.+++++++...+|++ ++..+...++
T Consensus 24 l~~~~~~~~~~~~l~g~~gs~k~~~~a~~~~~~----~~~~lvv~~~~~~A~~-l~~el~~~~~ 82 (661)
T 2d7d_A 24 LVKGIQEGKKHQTLLGATGTGKTFTVSNLIKEV----NKPTLVIAHNKTLAGQ-LYSEFKEFFP 82 (661)
T ss_dssp HHHHHHTTCSEEEEEECTTSCHHHHHHHHHHHH----CCCEEEECSSHHHHHH-HHHHHHHHCT
T ss_pred HHHHHhcCCCcEEEECcCCcHHHHHHHHHHHHh----CCCEEEEECCHHHHHH-HHHHHHHHcC
Confidence 445555553 46788999999998877665443 2357889998888775 4444455543
No 492
>2dpy_A FLII, flagellum-specific ATP synthase; beta barrel, alpha-beta structure, hydrolase; HET: ADP; 2.40A {Salmonella typhimurium}
Probab=71.43 E-value=1.9 Score=45.54 Aligned_cols=28 Identities=14% Similarity=0.172 Sum_probs=23.3
Q ss_pred HhcCCEEEEEcCCCCcHHHHHHHHHHhc
Q 006122 62 VETHATTIIVGETGSGKTTQIPQYLKEA 89 (660)
Q Consensus 62 l~~~~~vii~apTGsGKT~~ip~~l~~~ 89 (660)
+..++.+.|.||.|+||||++-.++...
T Consensus 154 i~~Gq~~~IvG~sGsGKSTLl~~Iag~~ 181 (438)
T 2dpy_A 154 VGRGQRMGLFAGSGVGKSVLLGMMARYT 181 (438)
T ss_dssp CBTTCEEEEEECTTSSHHHHHHHHHHHS
T ss_pred ecCCCEEEEECCCCCCHHHHHHHHhccc
Confidence 4678999999999999999987666544
No 493
>3ice_A Transcription termination factor RHO; transcription, ATPase, hexamer, helicase, RNA, RECA, OB fold ATP-binding, hydrolase; HET: MSE ADP SPD; 2.80A {Escherichia coli k-12} PDB: 1pv4_A 1pvo_A* 1xpo_A* 1xpr_A* 1xpu_A* 2ht1_A
Probab=71.41 E-value=2.7 Score=43.21 Aligned_cols=26 Identities=19% Similarity=0.290 Sum_probs=21.5
Q ss_pred HhcCCEEEEEcCCCCcHHHHHHHHHH
Q 006122 62 VETHATTIIVGETGSGKTTQIPQYLK 87 (660)
Q Consensus 62 l~~~~~vii~apTGsGKT~~ip~~l~ 87 (660)
+..++.+.|.||+|+|||+++-++..
T Consensus 171 i~rGQr~~IvG~sG~GKTtLl~~Iar 196 (422)
T 3ice_A 171 IGRGQRGLIVAPPKAGKTMLLQNIAQ 196 (422)
T ss_dssp CBTTCEEEEECCSSSSHHHHHHHHHH
T ss_pred ecCCcEEEEecCCCCChhHHHHHHHH
Confidence 35789999999999999988765544
No 494
>3ld9_A DTMP kinase, thymidylate kinase; ssgcid, NIH, niaid, SBRI, UW, emerald biostructures, ehrlich chaffeensis; 2.15A {Ehrlichia chaffeensis}
Probab=71.25 E-value=2.5 Score=39.95 Aligned_cols=25 Identities=32% Similarity=0.225 Sum_probs=20.1
Q ss_pred cCCEEEEEcCCCCcHHHHHHHHHHh
Q 006122 64 THATTIIVGETGSGKTTQIPQYLKE 88 (660)
Q Consensus 64 ~~~~vii~apTGsGKT~~ip~~l~~ 88 (660)
.+..+++.|+.||||||++-.+...
T Consensus 20 ~~~~i~~~G~~g~GKst~~~~l~~~ 44 (223)
T 3ld9_A 20 GSMFITFEGIDGSGKTTQSHLLAEY 44 (223)
T ss_dssp CCEEEEEECSTTSSHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHH
Confidence 4567899999999999998766543
No 495
>2gj8_A MNME, tRNA modification GTPase TRME; G-domain dimer, alpha-beta-sandwich, hydrolase; HET: GDP; 1.70A {Escherichia coli BL21} SCOP: c.37.1.8 PDB: 2gj9_A* 2gja_A* 1rfl_A
Probab=71.09 E-value=2.3 Score=38.11 Aligned_cols=23 Identities=17% Similarity=0.355 Sum_probs=19.1
Q ss_pred CCEEEEEcCCCCcHHHHHHHHHH
Q 006122 65 HATTIIVGETGSGKTTQIPQYLK 87 (660)
Q Consensus 65 ~~~vii~apTGsGKT~~ip~~l~ 87 (660)
+..+++.|++|+|||+++-.+..
T Consensus 4 ~~ki~ivG~~g~GKStLl~~l~~ 26 (172)
T 2gj8_A 4 GMKVVIAGRPNAGKSSLLNALAG 26 (172)
T ss_dssp CEEEEEEESTTSSHHHHHHHHHT
T ss_pred CCEEEEECCCCCCHHHHHHHHhC
Confidence 34589999999999999887754
No 496
>4akg_A Glutathione S-transferase class-MU 26 kDa isozyme heavy chain cytoplasmic; motor protein, AAA+ protein, ASCE protein, P-loop ntpase; HET: ATP ADP; 3.30A {Schistosoma japonicum} PDB: 4ai6_A* 4akh_A* 4aki_A* 3qmz_A
Probab=71.07 E-value=3.4 Score=53.32 Aligned_cols=64 Identities=17% Similarity=0.254 Sum_probs=38.7
Q ss_pred hcCCCcHHHHHHH---HHHHhcCCEEEEEcCCCCcHHHHHHHHHHhccc-cCCCeEEEEeCchHHHHH
Q 006122 46 RQRLPVYKYRTAI---LYLVETHATTIIVGETGSGKTTQIPQYLKEAGW-ADGGRVIACTQPRRLAVQ 109 (660)
Q Consensus 46 ~~~lPi~~~~~~i---~~~l~~~~~vii~apTGsGKT~~ip~~l~~~~~-~~~~~~i~v~p~r~la~~ 109 (660)
..-.|...+-.++ .+.+..+.-++++||||||||+++-.+...... ......+++..|+.+..+
T Consensus 901 ~~l~~~~~~~~K~~ql~e~~~~r~gvmlvGptgsGKTt~~~~La~al~~l~~~~~~~~~inpk~~t~~ 968 (2695)
T 4akg_A 901 SGFSMSEEFLKKCMQFYYMQKTQQALILVGKAGCGKTATWKTVIDAMAIFDGHANVVYVIDTKVLTKE 968 (2695)
T ss_dssp HTCCCCHHHHHHHHHHHHHHHHCSEEEEECSTTSSHHHHHHHHHHHHHHHTCCEEEEEEECTTTSCHH
T ss_pred cCCcccHHHHHHHHHHHHHHHhcceEEEECCCCCCHHHHHHHHHHHHHHhcCCCceEEEeCCCCCCHH
Confidence 3444555554444 455667788999999999999776544322111 112234666778766554
No 497
>1z08_A RAS-related protein RAB-21; RAB GTPase, vesicular trafficking, protein transport; HET: GNP; 1.80A {Homo sapiens} SCOP: c.37.1.8 PDB: 2ot3_B 1yzu_A* 1z0i_A 1yzt_A*
Probab=71.03 E-value=2.6 Score=37.11 Aligned_cols=22 Identities=27% Similarity=0.558 Sum_probs=18.7
Q ss_pred EEEEEcCCCCcHHHHHHHHHHh
Q 006122 67 TTIIVGETGSGKTTQIPQYLKE 88 (660)
Q Consensus 67 ~vii~apTGsGKT~~ip~~l~~ 88 (660)
.+++.|++|+|||+++-.++..
T Consensus 8 ~i~v~G~~~~GKssli~~l~~~ 29 (170)
T 1z08_A 8 KVVLLGEGCVGKTSLVLRYCEN 29 (170)
T ss_dssp EEEEECCTTSCHHHHHHHHHHC
T ss_pred EEEEECcCCCCHHHHHHHHHcC
Confidence 4889999999999998877654
No 498
>1c1y_A RAS-related protein RAP-1A; GTP-binding proteins, protein-protein complex, effectors, signaling protein; HET: GTP; 1.90A {Homo sapiens} SCOP: c.37.1.8 PDB: 3kuc_A* 1gua_A* 3cf6_R* 3brw_D*
Probab=71.02 E-value=2.6 Score=36.98 Aligned_cols=21 Identities=24% Similarity=0.589 Sum_probs=18.1
Q ss_pred EEEEEcCCCCcHHHHHHHHHH
Q 006122 67 TTIIVGETGSGKTTQIPQYLK 87 (660)
Q Consensus 67 ~vii~apTGsGKT~~ip~~l~ 87 (660)
.+++.|++|+|||+++-.+..
T Consensus 5 ki~v~G~~~~GKssli~~l~~ 25 (167)
T 1c1y_A 5 KLVVLGSGGVGKSALTVQFVQ 25 (167)
T ss_dssp EEEEECSTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHc
Confidence 478999999999999887764
No 499
>3j16_B RLI1P; ribosome recycling, translation, eukarya, ribosome; HET: ATP; 7.20A {Saccharomyces cerevisiae}
Probab=70.99 E-value=1.9 Score=47.51 Aligned_cols=27 Identities=22% Similarity=0.274 Sum_probs=22.8
Q ss_pred HhcCCEEEEEcCCCCcHHHHHHHHHHh
Q 006122 62 VETHATTIIVGETGSGKTTQIPQYLKE 88 (660)
Q Consensus 62 l~~~~~vii~apTGsGKT~~ip~~l~~ 88 (660)
+..++.+.|.||.||||||++-.+.-.
T Consensus 100 ~~~Gei~~LvGpNGaGKSTLLkiL~Gl 126 (608)
T 3j16_B 100 PRPGQVLGLVGTNGIGKSTALKILAGK 126 (608)
T ss_dssp CCTTSEEEEECCTTSSHHHHHHHHHTS
T ss_pred CCCCCEEEEECCCCChHHHHHHHHhcC
Confidence 468999999999999999998766543
No 500
>3pqc_A Probable GTP-binding protein ENGB; rossmann fold, GTPase, cell cycle, hydrolase; HET: GDP; 1.90A {Thermotoga maritima} PDB: 3pr1_A
Probab=70.91 E-value=2.3 Score=38.58 Aligned_cols=23 Identities=17% Similarity=0.407 Sum_probs=19.1
Q ss_pred CEEEEEcCCCCcHHHHHHHHHHh
Q 006122 66 ATTIIVGETGSGKTTQIPQYLKE 88 (660)
Q Consensus 66 ~~vii~apTGsGKT~~ip~~l~~ 88 (660)
..+++.|++|+|||+++-.++..
T Consensus 24 ~~i~v~G~~~~GKSsli~~l~~~ 46 (195)
T 3pqc_A 24 GEVAFVGRSNVGKSSLLNALFNR 46 (195)
T ss_dssp CEEEEEEBTTSSHHHHHHHHHTS
T ss_pred eEEEEECCCCCCHHHHHHHHHcC
Confidence 35899999999999998877543
Done!